#transId geneId source chrom start end strand proteinId geneName transcriptName geneType transcriptType MGP_CASTEiJ_T0020913.1 MGP_CASTEiJ_G0015731.1 mouse_genomes_project 1 108078965 108121247 + MGP_CASTEiJ_P0020913 Serpinb7 protein_coding protein_coding MGP_CASTEiJ_T0020914.1 MGP_CASTEiJ_G0015731.1 mouse_genomes_project 1 108107203 108138936 + MGP_CASTEiJ_P0020914 Serpinb7 protein_coding protein_coding MGP_CASTEiJ_T0011714.1 MGP_CASTEiJ_G0009877.1 mouse_genomes_project 1 52108817 52109390 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000431.1 MGP_CASTEiJ_G0000377.1 mouse_genomes_project 1 45394412 45398290 - TEC TEC MGP_CASTEiJ_T0021323.1 MGP_CASTEiJ_G0015816.1 mouse_genomes_project 1 133621254 133691380 + MGP_CASTEiJ_P0021323 Lemd1 protein_coding protein_coding MGP_CASTEiJ_T0021324.1 MGP_CASTEiJ_G0015816.1 mouse_genomes_project 1 133621278 133689522 + MGP_CASTEiJ_P0021324 Lemd1 protein_coding protein_coding MGP_CASTEiJ_T0021325.1 MGP_CASTEiJ_G0015816.1 mouse_genomes_project 1 133621280 133639546 + Lemd1 protein_coding processed_transcript MGP_CASTEiJ_T0021326.1 MGP_CASTEiJ_G0015816.1 mouse_genomes_project 1 133630982 133635792 + Lemd1 protein_coding processed_transcript MGP_CASTEiJ_T0021327.1 MGP_CASTEiJ_G0015816.1 mouse_genomes_project 1 133633866 133634524 + Lemd1 protein_coding processed_transcript MGP_CASTEiJ_T0021328.1 MGP_CASTEiJ_G0015816.1 mouse_genomes_project 1 133656179 133689329 + MGP_CASTEiJ_P0021328 Lemd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021329.1 MGP_CASTEiJ_G0015816.1 mouse_genomes_project 1 133656208 133689149 + MGP_CASTEiJ_P0021329 Lemd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021330.1 MGP_CASTEiJ_G0015816.1 mouse_genomes_project 1 133658036 133659447 + Lemd1 protein_coding retained_intron MGP_CASTEiJ_T0021331.1 MGP_CASTEiJ_G0015816.1 mouse_genomes_project 1 133658036 133689174 + MGP_CASTEiJ_P0021331 Lemd1 protein_coding protein_coding MGP_CASTEiJ_T0018103.1 MGP_CASTEiJ_G0015179.1 mouse_genomes_project 1 7019868 7050270 - MGP_CASTEiJ_P0018103 Vcpip1 protein_coding protein_coding MGP_CASTEiJ_T0019118.1 MGP_CASTEiJ_G0015379.1 mouse_genomes_project 1 53385421 53388685 - Ankrd44 protein_coding retained_intron MGP_CASTEiJ_T0019119.1 MGP_CASTEiJ_G0015379.1 mouse_genomes_project 1 53385421 53674956 - MGP_CASTEiJ_P0019119 Ankrd44 protein_coding protein_coding MGP_CASTEiJ_T0019120.1 MGP_CASTEiJ_G0015379.1 mouse_genomes_project 1 53385423 53674956 - MGP_CASTEiJ_P0019120 Ankrd44 protein_coding protein_coding MGP_CASTEiJ_T0019121.1 MGP_CASTEiJ_G0015379.1 mouse_genomes_project 1 53389168 53397507 - MGP_CASTEiJ_P0019121 Ankrd44 protein_coding protein_coding MGP_CASTEiJ_T0019122.1 MGP_CASTEiJ_G0015379.1 mouse_genomes_project 1 53391744 53511283 - MGP_CASTEiJ_P0019122 Ankrd44 protein_coding protein_coding MGP_CASTEiJ_T0019123.1 MGP_CASTEiJ_G0015379.1 mouse_genomes_project 1 53394980 53432943 - Ankrd44 protein_coding retained_intron MGP_CASTEiJ_T0019124.1 MGP_CASTEiJ_G0015379.1 mouse_genomes_project 1 53408020 53468799 - Ankrd44 protein_coding retained_intron MGP_CASTEiJ_T0019125.1 MGP_CASTEiJ_G0015379.1 mouse_genomes_project 1 53468291 53469910 - Ankrd44 protein_coding retained_intron MGP_CASTEiJ_T0019126.1 MGP_CASTEiJ_G0015379.1 mouse_genomes_project 1 53473508 53481287 - Ankrd44 protein_coding retained_intron MGP_CASTEiJ_T0019127.1 MGP_CASTEiJ_G0015379.1 mouse_genomes_project 1 53480946 53674923 - Ankrd44 protein_coding retained_intron MGP_CASTEiJ_T0019128.1 MGP_CASTEiJ_G0015379.1 mouse_genomes_project 1 53489896 53513979 - Ankrd44 protein_coding retained_intron MGP_CASTEiJ_T0019129.1 MGP_CASTEiJ_G0015379.1 mouse_genomes_project 1 53508153 53516367 - Ankrd44 protein_coding processed_transcript MGP_CASTEiJ_T0019130.1 MGP_CASTEiJ_G0015379.1 mouse_genomes_project 1 53508472 53674956 - Ankrd44 protein_coding retained_intron MGP_CASTEiJ_T0019131.1 MGP_CASTEiJ_G0015379.1 mouse_genomes_project 1 53509950 53561714 - Ankrd44 protein_coding processed_transcript MGP_CASTEiJ_T0019132.1 MGP_CASTEiJ_G0015379.1 mouse_genomes_project 1 53514347 53639615 - MGP_CASTEiJ_P0019132 Ankrd44 protein_coding protein_coding MGP_CASTEiJ_T0011822.1 MGP_CASTEiJ_G0009985.1 mouse_genomes_project 1 98754556 98754832 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002839.1 MGP_CASTEiJ_G0002679.1 mouse_genomes_project 1 169624528 169627390 - 5330438I03Rik antisense antisense MGP_CASTEiJ_T0009251.1 MGP_CASTEiJ_G0007439.1 mouse_genomes_project 1 62326001 62326237 + miRNA miRNA MGP_CASTEiJ_T0019141.1 MGP_CASTEiJ_G0015381.1 mouse_genomes_project 1 53812801 53814025 + Coq10b protein_coding retained_intron MGP_CASTEiJ_T0019142.1 MGP_CASTEiJ_G0015381.1 mouse_genomes_project 1 53812807 53832883 + MGP_CASTEiJ_P0019142 Coq10b protein_coding unknown_likely_coding MGP_CASTEiJ_T0019143.1 MGP_CASTEiJ_G0015381.1 mouse_genomes_project 1 53820292 53822407 + Coq10b protein_coding retained_intron MGP_CASTEiJ_T0022446.1 MGP_CASTEiJ_G0016033.1 mouse_genomes_project 1 168245637 168249519 - MGP_CASTEiJ_P0022446 Xcl1 protein_coding protein_coding MGP_CASTEiJ_T0021350.1 MGP_CASTEiJ_G0015822.1 mouse_genomes_project 1 133921407 133948284 + MGP_CASTEiJ_P0021350 Rbbp5 protein_coding protein_coding MGP_CASTEiJ_T0021351.1 MGP_CASTEiJ_G0015822.1 mouse_genomes_project 1 133921477 133949455 + MGP_CASTEiJ_P0021351 Rbbp5 protein_coding protein_coding MGP_CASTEiJ_T0021352.1 MGP_CASTEiJ_G0015822.1 mouse_genomes_project 1 133921533 133934521 + MGP_CASTEiJ_P0021352 Rbbp5 protein_coding protein_coding MGP_CASTEiJ_T0021353.1 MGP_CASTEiJ_G0015822.1 mouse_genomes_project 1 133921551 133947586 + MGP_CASTEiJ_P0021353 Rbbp5 protein_coding protein_coding MGP_CASTEiJ_T0021354.1 MGP_CASTEiJ_G0015822.1 mouse_genomes_project 1 133921684 133934605 + MGP_CASTEiJ_P0021354 Rbbp5 protein_coding protein_coding MGP_CASTEiJ_T0021355.1 MGP_CASTEiJ_G0015822.1 mouse_genomes_project 1 133947526 133949451 + Rbbp5 protein_coding retained_intron MGP_CASTEiJ_T0022827.1 MGP_CASTEiJ_G0016119.1 mouse_genomes_project 1 175703947 175709229 - MGP_CASTEiJ_P0022827 Nhlh1 protein_coding protein_coding MGP_CASTEiJ_T0000730.1 MGP_CASTEiJ_G0000673.1 mouse_genomes_project 1 185786307 185787624 + TEC TEC MGP_CASTEiJ_T0005650.1 MGP_CASTEiJ_G0004751.1 mouse_genomes_project 1 79984226 79990624 + 9830004L10Rik lincRNA lincRNA MGP_CASTEiJ_T0005651.1 MGP_CASTEiJ_G0004751.1 mouse_genomes_project 1 79985539 79990624 + 9830004L10Rik lincRNA lincRNA MGP_CASTEiJ_T0005652.1 MGP_CASTEiJ_G0004751.1 mouse_genomes_project 1 79985561 79990669 + 9830004L10Rik lincRNA lincRNA MGP_CASTEiJ_T0000769.1 MGP_CASTEiJ_G0000710.1 mouse_genomes_project 1 200063939 200066876 + TEC TEC MGP_CASTEiJ_T0010934.1 MGP_CASTEiJ_G0009122.1 mouse_genomes_project 1 197991736 197992025 - Gm23583 misc_RNA misc_RNA MGP_CASTEiJ_T0000488.1 MGP_CASTEiJ_G0000434.1 mouse_genomes_project 1 78141532 78142322 + TEC TEC MGP_CASTEiJ_T0019208.1 MGP_CASTEiJ_G0015395.1 mouse_genomes_project 1 56812036 56827697 - MGP_CASTEiJ_P0019208 Kctd18 protein_coding protein_coding MGP_CASTEiJ_T0019209.1 MGP_CASTEiJ_G0015395.1 mouse_genomes_project 1 56812183 56827741 - MGP_CASTEiJ_P0019209 Kctd18 protein_coding protein_coding MGP_CASTEiJ_T0019210.1 MGP_CASTEiJ_G0015395.1 mouse_genomes_project 1 56812188 56827137 - MGP_CASTEiJ_P0019210 Kctd18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019211.1 MGP_CASTEiJ_G0015395.1 mouse_genomes_project 1 56813007 56876076 - MGP_CASTEiJ_P0019211 Kctd18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019212.1 MGP_CASTEiJ_G0015395.1 mouse_genomes_project 1 56813515 56827661 - MGP_CASTEiJ_P0019212 Kctd18 protein_coding protein_coding MGP_CASTEiJ_T0019213.1 MGP_CASTEiJ_G0015395.1 mouse_genomes_project 1 56813627 56821085 - Kctd18 protein_coding retained_intron MGP_CASTEiJ_T0019214.1 MGP_CASTEiJ_G0015395.1 mouse_genomes_project 1 56813655 56819738 - Kctd18 protein_coding retained_intron MGP_CASTEiJ_T0019215.1 MGP_CASTEiJ_G0015395.1 mouse_genomes_project 1 56817707 56827665 - Kctd18 protein_coding retained_intron MGP_CASTEiJ_T0019216.1 MGP_CASTEiJ_G0015395.1 mouse_genomes_project 1 56818793 56820619 - Kctd18 protein_coding retained_intron MGP_CASTEiJ_T0019217.1 MGP_CASTEiJ_G0015395.1 mouse_genomes_project 1 56821203 56827692 - Kctd18 protein_coding retained_intron MGP_CASTEiJ_T0019218.1 MGP_CASTEiJ_G0015395.1 mouse_genomes_project 1 56821239 56827692 - Kctd18 protein_coding retained_intron MGP_CASTEiJ_T0012027.1 MGP_CASTEiJ_G0010190.1 mouse_genomes_project 1 196400843 196401426 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023511.1 MGP_CASTEiJ_G0016282.1 mouse_genomes_project 1 196026535 196039742 + MGP_CASTEiJ_P0023511 Nsl1 protein_coding protein_coding MGP_CASTEiJ_T0023512.1 MGP_CASTEiJ_G0016282.1 mouse_genomes_project 1 196026547 196041477 + MGP_CASTEiJ_P0023512 Nsl1 protein_coding protein_coding MGP_CASTEiJ_T0023513.1 MGP_CASTEiJ_G0016282.1 mouse_genomes_project 1 196026554 196053397 + MGP_CASTEiJ_P0023513 Nsl1 protein_coding protein_coding MGP_CASTEiJ_T0000533.1 MGP_CASTEiJ_G0000479.1 mouse_genomes_project 1 92461487 92463972 - TEC TEC MGP_CASTEiJ_T0018220.1 MGP_CASTEiJ_G0015194.1 mouse_genomes_project 1 10990268 11017426 - MGP_CASTEiJ_P0018220 Tram1 protein_coding protein_coding MGP_CASTEiJ_T0018221.1 MGP_CASTEiJ_G0015194.1 mouse_genomes_project 1 11003484 11007168 - Tram1 protein_coding retained_intron MGP_CASTEiJ_T0018222.1 MGP_CASTEiJ_G0015194.1 mouse_genomes_project 1 11005469 11017395 - MGP_CASTEiJ_P0018222 Tram1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011759.1 MGP_CASTEiJ_G0009922.1 mouse_genomes_project 1 64650518 64650840 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000376.1 MGP_CASTEiJ_G0000323.1 mouse_genomes_project 1 23085428 23088548 - TEC TEC MGP_CASTEiJ_T0011730.1 MGP_CASTEiJ_G0009893.1 mouse_genomes_project 1 57648664 57649115 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011596.1 MGP_CASTEiJ_G0009759.1 mouse_genomes_project 1 14131825 14132508 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019543.1 MGP_CASTEiJ_G0015457.1 mouse_genomes_project 1 64282952 64285017 - MGP_CASTEiJ_P0019543 Crygb protein_coding protein_coding MGP_CASTEiJ_T0021820.1 MGP_CASTEiJ_G0015919.1 mouse_genomes_project 1 152643514 152652768 + MGP_CASTEiJ_P0021820 Ptgs2 protein_coding protein_coding MGP_CASTEiJ_T0021821.1 MGP_CASTEiJ_G0015919.1 mouse_genomes_project 1 152643815 152644811 + MGP_CASTEiJ_P0021821 Ptgs2 protein_coding protein_coding MGP_CASTEiJ_T0000625.1 MGP_CASTEiJ_G0000569.1 mouse_genomes_project 1 140917558 140920348 + TEC TEC MGP_CASTEiJ_T0023222.1 MGP_CASTEiJ_G0016224.1 mouse_genomes_project 1 185422774 185432147 + MGP_CASTEiJ_P0023222 9130409I23Rik protein_coding protein_coding MGP_CASTEiJ_T0020907.1 MGP_CASTEiJ_G0015727.1 mouse_genomes_project 1 107672895 107717557 - MGP_CASTEiJ_P0020907 Serpinb3d protein_coding protein_coding MGP_CASTEiJ_T0023281.1 MGP_CASTEiJ_G0016236.1 mouse_genomes_project 1 186766212 186794424 - MGP_CASTEiJ_P0023281 Fbxo28 protein_coding protein_coding MGP_CASTEiJ_T0023282.1 MGP_CASTEiJ_G0016236.1 mouse_genomes_project 1 186768299 186771495 - Fbxo28 protein_coding retained_intron MGP_CASTEiJ_T0023283.1 MGP_CASTEiJ_G0016236.1 mouse_genomes_project 1 186769575 186794406 - MGP_CASTEiJ_P0023283 Fbxo28 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023284.1 MGP_CASTEiJ_G0016236.1 mouse_genomes_project 1 186770102 186794377 - MGP_CASTEiJ_P0023284 Fbxo28 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023285.1 MGP_CASTEiJ_G0016236.1 mouse_genomes_project 1 186770355 186794435 - MGP_CASTEiJ_P0023285 Fbxo28 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021172.1 MGP_CASTEiJ_G0015781.1 mouse_genomes_project 1 129837451 129843088 - MGP_CASTEiJ_P0021172 Cxcr4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021173.1 MGP_CASTEiJ_G0015781.1 mouse_genomes_project 1 129837455 129843085 - MGP_CASTEiJ_P0021173 Cxcr4 protein_coding protein_coding MGP_CASTEiJ_T0021174.1 MGP_CASTEiJ_G0015781.1 mouse_genomes_project 1 129839970 129843088 - MGP_CASTEiJ_P0021174 Cxcr4 protein_coding protein_coding MGP_CASTEiJ_T0011690.1 MGP_CASTEiJ_G0009853.1 mouse_genomes_project 1 47218830 47220296 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005740.1 MGP_CASTEiJ_G0004825.1 mouse_genomes_project 1 132131931 132154775 + Gm28856 lincRNA lincRNA MGP_CASTEiJ_T0000586.1 MGP_CASTEiJ_G0000532.1 mouse_genomes_project 1 131184035 131186305 + TEC TEC MGP_CASTEiJ_T0020980.1 MGP_CASTEiJ_G0015742.1 mouse_genomes_project 1 119347465 119359282 + Tfcp2l1 protein_coding processed_transcript MGP_CASTEiJ_T0020981.1 MGP_CASTEiJ_G0015742.1 mouse_genomes_project 1 119347466 119412776 + MGP_CASTEiJ_P0020981 Tfcp2l1 protein_coding protein_coding MGP_CASTEiJ_T0023183.1 MGP_CASTEiJ_G0016214.1 mouse_genomes_project 1 184960636 185011901 + MGP_CASTEiJ_P0023183 Lin9 protein_coding protein_coding MGP_CASTEiJ_T0023184.1 MGP_CASTEiJ_G0016214.1 mouse_genomes_project 1 184960820 185011908 + MGP_CASTEiJ_P0023184 Lin9 protein_coding protein_coding MGP_CASTEiJ_T0023185.1 MGP_CASTEiJ_G0016214.1 mouse_genomes_project 1 184960839 185001607 + Lin9 protein_coding retained_intron MGP_CASTEiJ_T0023186.1 MGP_CASTEiJ_G0016214.1 mouse_genomes_project 1 184960841 184968641 + Lin9 protein_coding processed_transcript MGP_CASTEiJ_T0023187.1 MGP_CASTEiJ_G0016214.1 mouse_genomes_project 1 184960846 185011901 + MGP_CASTEiJ_P0023187 Lin9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023188.1 MGP_CASTEiJ_G0016214.1 mouse_genomes_project 1 184960852 184995314 + Lin9 protein_coding retained_intron MGP_CASTEiJ_T0023189.1 MGP_CASTEiJ_G0016214.1 mouse_genomes_project 1 184982174 184994337 + MGP_CASTEiJ_P0023189 Lin9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023190.1 MGP_CASTEiJ_G0016214.1 mouse_genomes_project 1 184999409 185010089 + Lin9 protein_coding retained_intron MGP_CASTEiJ_T0023191.1 MGP_CASTEiJ_G0016214.1 mouse_genomes_project 1 185000855 185011901 + Lin9 protein_coding retained_intron MGP_CASTEiJ_T0000599.1 MGP_CASTEiJ_G0000544.1 mouse_genomes_project 1 135317465 135320683 - TEC TEC MGP_CASTEiJ_T0005733.1 MGP_CASTEiJ_G0004819.1 mouse_genomes_project 1 125589791 125944757 - lincRNA lincRNA MGP_CASTEiJ_T0005598.1 MGP_CASTEiJ_G0004712.1 mouse_genomes_project 1 60503533 60528984 + Gm11588 lincRNA lincRNA MGP_CASTEiJ_T0098423.1 MGP_CASTEiJ_G0035354.1 mouse_genomes_project 1 29044863 29045188 - Gm27362 rRNA rRNA MGP_CASTEiJ_T0011563.1 MGP_CASTEiJ_G0009726.1 mouse_genomes_project 1 4232789 4232819 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098309.1 MGP_CASTEiJ_G0035240.1 mouse_genomes_project 1 167901818 167902153 - pseudogene pseudogene MGP_CASTEiJ_T0011882.1 MGP_CASTEiJ_G0010045.1 mouse_genomes_project 1 121688617 121688827 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000626.1 MGP_CASTEiJ_G0000570.1 mouse_genomes_project 1 140958253 140961231 + TEC TEC MGP_CASTEiJ_T0100306.1 MGP_CASTEiJ_G0037219.1 mouse_genomes_project 1 119168485 119168616 - Gm26080 snoRNA snoRNA MGP_CASTEiJ_T0098428.1 MGP_CASTEiJ_G0035359.1 mouse_genomes_project 1 83226175 83226296 - n-R5s214 rRNA rRNA MGP_CASTEiJ_T0000758.1 MGP_CASTEiJ_G0000700.1 mouse_genomes_project 1 197122012 197122145 + TEC TEC MGP_CASTEiJ_T0011871.1 MGP_CASTEiJ_G0010034.1 mouse_genomes_project 1 119194899 119195893 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011868.1 MGP_CASTEiJ_G0010031.1 mouse_genomes_project 1 118390016 118391292 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018759.1 MGP_CASTEiJ_G0015305.1 mouse_genomes_project 1 37224620 37235726 + MGP_CASTEiJ_P0018759 Nms protein_coding protein_coding MGP_CASTEiJ_T0018760.1 MGP_CASTEiJ_G0015305.1 mouse_genomes_project 1 37224674 37234093 + MGP_CASTEiJ_P0018760 Nms protein_coding protein_coding MGP_CASTEiJ_T0100297.1 MGP_CASTEiJ_G0037210.1 mouse_genomes_project 1 102570787 102570919 - Gm24122 snoRNA snoRNA MGP_CASTEiJ_T0023606.1 MGP_CASTEiJ_G0016302.1 mouse_genomes_project 1 198149704 198168604 + MGP_CASTEiJ_P0023606 Irf6 protein_coding protein_coding MGP_CASTEiJ_T0023607.1 MGP_CASTEiJ_G0016302.1 mouse_genomes_project 1 198149747 198163449 + Irf6 protein_coding retained_intron MGP_CASTEiJ_T0023608.1 MGP_CASTEiJ_G0016302.1 mouse_genomes_project 1 198153298 198160767 + Irf6 protein_coding retained_intron MGP_CASTEiJ_T0023610.1 MGP_CASTEiJ_G0016302.1 mouse_genomes_project 1 198165085 198166072 + Irf6 protein_coding retained_intron MGP_CASTEiJ_T0000761.1 MGP_CASTEiJ_G0000702.1 mouse_genomes_project 1 198262636 198264852 - TEC TEC MGP_CASTEiJ_T0098434.1 MGP_CASTEiJ_G0035365.1 mouse_genomes_project 1 136789035 136789136 - Gm26280 rRNA rRNA MGP_CASTEiJ_T0021857.1 MGP_CASTEiJ_G0015924.1 mouse_genomes_project 1 153088139 153548581 - MGP_CASTEiJ_P0021857 Hmcn1 protein_coding protein_coding MGP_CASTEiJ_T0021858.1 MGP_CASTEiJ_G0015924.1 mouse_genomes_project 1 153089142 153548581 - MGP_CASTEiJ_P0021858 Hmcn1 protein_coding protein_coding MGP_CASTEiJ_T0021859.1 MGP_CASTEiJ_G0015924.1 mouse_genomes_project 1 153089299 153110237 - MGP_CASTEiJ_P0021859 Hmcn1 protein_coding protein_coding MGP_CASTEiJ_T0021860.1 MGP_CASTEiJ_G0015924.1 mouse_genomes_project 1 153089326 153091215 - Hmcn1 protein_coding retained_intron MGP_CASTEiJ_T0021861.1 MGP_CASTEiJ_G0015924.1 mouse_genomes_project 1 153104466 153107648 - Hmcn1 protein_coding processed_transcript MGP_CASTEiJ_T0021862.1 MGP_CASTEiJ_G0015924.1 mouse_genomes_project 1 153415575 153548965 - Hmcn1 protein_coding retained_intron MGP_CASTEiJ_T0005774.1 MGP_CASTEiJ_G0004854.1 mouse_genomes_project 1 152715409 152720665 - Ptgs2os2 lincRNA lincRNA MGP_CASTEiJ_T0023662.1 MGP_CASTEiJ_G0016311.1 mouse_genomes_project 1 200106514 200153206 - MGP_CASTEiJ_P0023662 Cd46 protein_coding protein_coding MGP_CASTEiJ_T0023663.1 MGP_CASTEiJ_G0016311.1 mouse_genomes_project 1 200111758 200128345 - Cd46 protein_coding retained_intron MGP_CASTEiJ_T0023664.1 MGP_CASTEiJ_G0016311.1 mouse_genomes_project 1 200111823 200153182 - MGP_CASTEiJ_P0023664 Cd46 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023665.1 MGP_CASTEiJ_G0016311.1 mouse_genomes_project 1 200111846 200144330 - Cd46 protein_coding retained_intron MGP_CASTEiJ_T0011901.1 MGP_CASTEiJ_G0010064.1 mouse_genomes_project 1 130017158 130017581 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000474.1 MGP_CASTEiJ_G0000420.1 mouse_genomes_project 1 67923513 67924887 - TEC TEC MGP_CASTEiJ_T0000686.1 MGP_CASTEiJ_G0000630.1 mouse_genomes_project 1 164930697 164931819 + TEC TEC MGP_CASTEiJ_T0100304.1 MGP_CASTEiJ_G0037217.1 mouse_genomes_project 1 113328008 113328142 + Gm22331 snoRNA snoRNA MGP_CASTEiJ_T0098429.1 MGP_CASTEiJ_G0035360.1 mouse_genomes_project 1 85584078 85584182 + n-R5s215 rRNA rRNA MGP_CASTEiJ_T0000500.1 MGP_CASTEiJ_G0000446.1 mouse_genomes_project 1 82034550 82036354 + TEC TEC MGP_CASTEiJ_T0000639.1 MGP_CASTEiJ_G0000583.1 mouse_genomes_project 1 151937860 151939315 - TEC TEC MGP_CASTEiJ_T0000667.1 MGP_CASTEiJ_G0000611.1 mouse_genomes_project 1 161527653 161530261 + TEC TEC MGP_CASTEiJ_T0009222.1 MGP_CASTEiJ_G0007410.1 mouse_genomes_project 1 5879133 5879243 - Gm23358 miRNA miRNA MGP_CASTEiJ_T0005677.1 MGP_CASTEiJ_G0004774.1 mouse_genomes_project 1 91712166 91721410 - Gm26683 lincRNA lincRNA MGP_CASTEiJ_T0022377.1 MGP_CASTEiJ_G0016014.1 mouse_genomes_project 1 166210540 166240873 - MGP_CASTEiJ_P0022377 Fmo3 protein_coding protein_coding MGP_CASTEiJ_T0022378.1 MGP_CASTEiJ_G0016014.1 mouse_genomes_project 1 166220539 166240874 - Fmo3 protein_coding retained_intron MGP_CASTEiJ_T0018890.1 MGP_CASTEiJ_G0015336.1 mouse_genomes_project 1 42687671 42697792 - MGP_CASTEiJ_P0018890 Mettl21c protein_coding protein_coding MGP_CASTEiJ_T0018891.1 MGP_CASTEiJ_G0015336.1 mouse_genomes_project 1 42688200 42695700 - Mettl21c protein_coding processed_transcript MGP_CASTEiJ_T0018892.1 MGP_CASTEiJ_G0015336.1 mouse_genomes_project 1 42688762 42697820 - Mettl21c protein_coding retained_intron MGP_CASTEiJ_T0000409.1 MGP_CASTEiJ_G0000355.1 mouse_genomes_project 1 32922857 32925891 + TEC TEC MGP_CASTEiJ_T0010930.1 MGP_CASTEiJ_G0009118.1 mouse_genomes_project 1 180796326 180796591 + Gm25288 misc_RNA misc_RNA MGP_CASTEiJ_T0005505.1 MGP_CASTEiJ_G0004642.1 mouse_genomes_project 1 14125248 14131124 + D030040B21Rik lincRNA lincRNA MGP_CASTEiJ_T0016294.1 MGP_CASTEiJ_G0014425.1 mouse_genomes_project 1 133910634 133921088 - 6030442K20Rik processed_transcript antisense MGP_CASTEiJ_T0016295.1 MGP_CASTEiJ_G0014425.1 mouse_genomes_project 1 133920103 133921107 - 6030442K20Rik processed_transcript retained_intron MGP_CASTEiJ_T0018535.1 MGP_CASTEiJ_G0015268.1 mouse_genomes_project 1 32954175 32986210 + MGP_CASTEiJ_P0018535 Plekhb2 protein_coding protein_coding MGP_CASTEiJ_T0018536.1 MGP_CASTEiJ_G0015268.1 mouse_genomes_project 1 32954191 32991825 + MGP_CASTEiJ_P0018536 Plekhb2 protein_coding protein_coding MGP_CASTEiJ_T0018537.1 MGP_CASTEiJ_G0015268.1 mouse_genomes_project 1 32958810 32973979 + MGP_CASTEiJ_P0018537 Plekhb2 protein_coding protein_coding MGP_CASTEiJ_T0018538.1 MGP_CASTEiJ_G0015268.1 mouse_genomes_project 1 32989900 32991822 + Plekhb2 protein_coding processed_transcript MGP_CASTEiJ_T0005681.1 MGP_CASTEiJ_G0004778.1 mouse_genomes_project 1 92429273 92434557 + Gm26720 lincRNA lincRNA MGP_CASTEiJ_T0011960.1 MGP_CASTEiJ_G0010123.1 mouse_genomes_project 1 160537655 160538260 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099139.1 MGP_CASTEiJ_G0036052.1 mouse_genomes_project 1 179779466 179779642 + Gm25560 snRNA snRNA MGP_CASTEiJ_T0019763.1 MGP_CASTEiJ_G0015501.1 mouse_genomes_project 1 73997275 74004291 + MGP_CASTEiJ_P0019763 Catip protein_coding protein_coding MGP_CASTEiJ_T0019764.1 MGP_CASTEiJ_G0015501.1 mouse_genomes_project 1 73997532 74002771 + MGP_CASTEiJ_P0019764 Catip protein_coding protein_coding MGP_CASTEiJ_T0019765.1 MGP_CASTEiJ_G0015501.1 mouse_genomes_project 1 73997608 74004120 + MGP_CASTEiJ_P0019765 Catip protein_coding protein_coding MGP_CASTEiJ_T0019766.1 MGP_CASTEiJ_G0015501.1 mouse_genomes_project 1 73999717 74001721 + Catip protein_coding retained_intron MGP_CASTEiJ_T0002669.1 MGP_CASTEiJ_G0002549.1 mouse_genomes_project 1 18655900 18661650 + antisense antisense MGP_CASTEiJ_T0018601.1 MGP_CASTEiJ_G0015280.1 mouse_genomes_project 1 34711453 34721178 - MGP_CASTEiJ_P0018601 Sema4c protein_coding protein_coding MGP_CASTEiJ_T0018602.1 MGP_CASTEiJ_G0015280.1 mouse_genomes_project 1 34711456 34721178 - MGP_CASTEiJ_P0018602 Sema4c protein_coding protein_coding MGP_CASTEiJ_T0018603.1 MGP_CASTEiJ_G0015280.1 mouse_genomes_project 1 34711456 34720355 - MGP_CASTEiJ_P0018603 Sema4c protein_coding protein_coding MGP_CASTEiJ_T0018604.1 MGP_CASTEiJ_G0015280.1 mouse_genomes_project 1 34711456 34720386 - MGP_CASTEiJ_P0018604 Sema4c protein_coding protein_coding MGP_CASTEiJ_T0018605.1 MGP_CASTEiJ_G0015280.1 mouse_genomes_project 1 34714555 34715724 - Sema4c protein_coding retained_intron MGP_CASTEiJ_T0018606.1 MGP_CASTEiJ_G0015280.1 mouse_genomes_project 1 34716053 34717057 - Sema4c protein_coding retained_intron MGP_CASTEiJ_T0018607.1 MGP_CASTEiJ_G0015280.1 mouse_genomes_project 1 34717226 34720363 - MGP_CASTEiJ_P0018607 Sema4c protein_coding protein_coding MGP_CASTEiJ_T0018608.1 MGP_CASTEiJ_G0015280.1 mouse_genomes_project 1 34718758 34721079 - MGP_CASTEiJ_P0018608 Sema4c protein_coding protein_coding MGP_CASTEiJ_T0000547.1 MGP_CASTEiJ_G0000493.1 mouse_genomes_project 1 106661943 106665209 - TEC TEC MGP_CASTEiJ_T0000396.1 MGP_CASTEiJ_G0000343.1 mouse_genomes_project 1 30536073 30539466 + TEC TEC MGP_CASTEiJ_T0005620.1 MGP_CASTEiJ_G0004729.1 mouse_genomes_project 1 71378133 71404855 - Gm28818 lincRNA lincRNA MGP_CASTEiJ_T0005621.1 MGP_CASTEiJ_G0004729.1 mouse_genomes_project 1 71382118 71384314 - Gm28818 lincRNA lincRNA MGP_CASTEiJ_T0000604.1 MGP_CASTEiJ_G0000549.1 mouse_genomes_project 1 136434248 136441894 - TEC TEC MGP_CASTEiJ_T0099144.1 MGP_CASTEiJ_G0036057.1 mouse_genomes_project 1 185181698 185181806 + Gm24836 snRNA snRNA MGP_CASTEiJ_T0011689.1 MGP_CASTEiJ_G0009852.1 mouse_genomes_project 1 46999239 46999450 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016270.1 MGP_CASTEiJ_G0014415.1 mouse_genomes_project 1 63864857 63875595 - 2810408I11Rik processed_transcript antisense MGP_CASTEiJ_T0016271.1 MGP_CASTEiJ_G0014415.1 mouse_genomes_project 1 63868284 63875544 - 2810408I11Rik processed_transcript antisense MGP_CASTEiJ_T0016272.1 MGP_CASTEiJ_G0014415.1 mouse_genomes_project 1 63874059 63875564 - 2810408I11Rik processed_transcript retained_intron MGP_CASTEiJ_T0022971.1 MGP_CASTEiJ_G0016169.1 mouse_genomes_project 1 178108481 178188291 + MGP_CASTEiJ_P0022971 Spta1 protein_coding protein_coding MGP_CASTEiJ_T0022972.1 MGP_CASTEiJ_G0016169.1 mouse_genomes_project 1 178109833 178183324 + MGP_CASTEiJ_P0022972 Spta1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022973.1 MGP_CASTEiJ_G0016169.1 mouse_genomes_project 1 178159514 178187367 + Spta1 protein_coding retained_intron MGP_CASTEiJ_T0000330.1 MGP_CASTEiJ_G0000279.1 mouse_genomes_project 1 4482898 4488469 + TEC TEC MGP_CASTEiJ_T0011628.1 MGP_CASTEiJ_G0009791.1 mouse_genomes_project 1 25812115 25814283 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011830.1 MGP_CASTEiJ_G0009993.1 mouse_genomes_project 1 101863095 101863544 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005529.1 MGP_CASTEiJ_G0004664.1 mouse_genomes_project 1 33735442 33761879 - Gm37068 lincRNA lincRNA MGP_CASTEiJ_T0002745.1 MGP_CASTEiJ_G0002606.1 mouse_genomes_project 1 86928583 87065494 - Gm28375 antisense antisense MGP_CASTEiJ_T0002812.1 MGP_CASTEiJ_G0002657.1 mouse_genomes_project 1 156471345 156473548 - Gm29529 antisense antisense MGP_CASTEiJ_T0023050.1 MGP_CASTEiJ_G0016189.1 mouse_genomes_project 1 180819558 180854598 + Sdccag8 protein_coding retained_intron MGP_CASTEiJ_T0023051.1 MGP_CASTEiJ_G0016189.1 mouse_genomes_project 1 180819558 180963005 + Sdccag8 protein_coding retained_intron MGP_CASTEiJ_T0023052.1 MGP_CASTEiJ_G0016189.1 mouse_genomes_project 1 180819558 180868232 + MGP_CASTEiJ_P0023052 Sdccag8 protein_coding protein_coding MGP_CASTEiJ_T0023053.1 MGP_CASTEiJ_G0016189.1 mouse_genomes_project 1 180819558 181033711 + MGP_CASTEiJ_P0023053 Sdccag8 protein_coding protein_coding MGP_CASTEiJ_T0023054.1 MGP_CASTEiJ_G0016189.1 mouse_genomes_project 1 180819558 181033711 + MGP_CASTEiJ_P0023054 Sdccag8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023055.1 MGP_CASTEiJ_G0016189.1 mouse_genomes_project 1 181010443 181033711 + Sdccag8 protein_coding processed_transcript MGP_CASTEiJ_T0002854.1 MGP_CASTEiJ_G0002691.1 mouse_genomes_project 1 175996620 175997288 + Gm36937 antisense antisense MGP_CASTEiJ_T0018880.1 MGP_CASTEiJ_G0015335.1 mouse_genomes_project 1 42596141 42612146 + Tpp2 protein_coding processed_transcript MGP_CASTEiJ_T0018881.1 MGP_CASTEiJ_G0015335.1 mouse_genomes_project 1 42596501 42679924 + MGP_CASTEiJ_P0018881 Tpp2 protein_coding protein_coding MGP_CASTEiJ_T0018882.1 MGP_CASTEiJ_G0015335.1 mouse_genomes_project 1 42596508 42619645 + Tpp2 protein_coding retained_intron MGP_CASTEiJ_T0018883.1 MGP_CASTEiJ_G0015335.1 mouse_genomes_project 1 42596509 42619645 + Tpp2 protein_coding retained_intron MGP_CASTEiJ_T0018884.1 MGP_CASTEiJ_G0015335.1 mouse_genomes_project 1 42596509 42679953 + MGP_CASTEiJ_P0018884 Tpp2 protein_coding protein_coding MGP_CASTEiJ_T0018885.1 MGP_CASTEiJ_G0015335.1 mouse_genomes_project 1 42596527 42667091 + MGP_CASTEiJ_P0018885 Tpp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018886.1 MGP_CASTEiJ_G0015335.1 mouse_genomes_project 1 42596539 42667072 + MGP_CASTEiJ_P0018886 Tpp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018887.1 MGP_CASTEiJ_G0015335.1 mouse_genomes_project 1 42637878 42643674 + MGP_CASTEiJ_P0018887 Tpp2 protein_coding protein_coding MGP_CASTEiJ_T0018888.1 MGP_CASTEiJ_G0015335.1 mouse_genomes_project 1 42654695 42679953 + MGP_CASTEiJ_P0018888 Tpp2 protein_coding protein_coding MGP_CASTEiJ_T0018889.1 MGP_CASTEiJ_G0015335.1 mouse_genomes_project 1 42677781 42679289 + Tpp2 protein_coding retained_intron MGP_CASTEiJ_T0019469.1 MGP_CASTEiJ_G0015439.1 mouse_genomes_project 1 62301144 62305531 + MGP_CASTEiJ_P0019469 Eef1b2 protein_coding protein_coding MGP_CASTEiJ_T0019470.1 MGP_CASTEiJ_G0015439.1 mouse_genomes_project 1 62301451 62303410 + Eef1b2 protein_coding processed_transcript MGP_CASTEiJ_T0019471.1 MGP_CASTEiJ_G0015439.1 mouse_genomes_project 1 62301451 62304221 + MGP_CASTEiJ_P0019471 Eef1b2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019472.1 MGP_CASTEiJ_G0015439.1 mouse_genomes_project 1 62301451 62304524 + MGP_CASTEiJ_P0019472 Eef1b2 protein_coding protein_coding MGP_CASTEiJ_T0019473.1 MGP_CASTEiJ_G0015439.1 mouse_genomes_project 1 62301463 62304436 + MGP_CASTEiJ_P0019473 Eef1b2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019474.1 MGP_CASTEiJ_G0015439.1 mouse_genomes_project 1 62301463 62304490 + MGP_CASTEiJ_P0019474 Eef1b2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019475.1 MGP_CASTEiJ_G0015439.1 mouse_genomes_project 1 62301465 62303324 + Eef1b2 protein_coding processed_transcript MGP_CASTEiJ_T0019476.1 MGP_CASTEiJ_G0015439.1 mouse_genomes_project 1 62301503 62303780 + MGP_CASTEiJ_P0019476 Eef1b2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019477.1 MGP_CASTEiJ_G0015439.1 mouse_genomes_project 1 62301541 62303799 + MGP_CASTEiJ_P0019477 Eef1b2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000497.1 MGP_CASTEiJ_G0000443.1 mouse_genomes_project 1 80573467 80575338 - TEC TEC MGP_CASTEiJ_T0005859.1 MGP_CASTEiJ_G0004921.1 mouse_genomes_project 1 188420046 188420871 + Gm38108 lincRNA lincRNA MGP_CASTEiJ_T0005770.1 MGP_CASTEiJ_G0004851.1 mouse_genomes_project 1 141324838 141331391 + Gm34816 lincRNA lincRNA MGP_CASTEiJ_T0011921.1 MGP_CASTEiJ_G0010084.1 mouse_genomes_project 1 145046095 145046390 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011966.1 MGP_CASTEiJ_G0010129.1 mouse_genomes_project 1 162509689 162509899 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009234.1 MGP_CASTEiJ_G0007422.1 mouse_genomes_project 1 32143676 32143749 + Mir6896 miRNA miRNA MGP_CASTEiJ_T0023464.1 MGP_CASTEiJ_G0016274.1 mouse_genomes_project 1 194757619 194806355 - MGP_CASTEiJ_P0023464 Smyd2 protein_coding protein_coding MGP_CASTEiJ_T0023465.1 MGP_CASTEiJ_G0016274.1 mouse_genomes_project 1 194757621 194766146 - Smyd2 protein_coding processed_transcript MGP_CASTEiJ_T0023466.1 MGP_CASTEiJ_G0016274.1 mouse_genomes_project 1 194757769 194759533 - Smyd2 protein_coding retained_intron MGP_CASTEiJ_T0023467.1 MGP_CASTEiJ_G0016274.1 mouse_genomes_project 1 194762194 194806245 - Smyd2 protein_coding retained_intron MGP_CASTEiJ_T0020159.1 MGP_CASTEiJ_G0015567.1 mouse_genomes_project 1 82162773 82165598 + MGP_CASTEiJ_P0020159 Gm9747 protein_coding protein_coding MGP_CASTEiJ_T0011618.1 MGP_CASTEiJ_G0009781.1 mouse_genomes_project 1 21054661 21055304 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100305.1 MGP_CASTEiJ_G0037218.1 mouse_genomes_project 1 114611360 114611494 - Gm24937 snoRNA snoRNA MGP_CASTEiJ_T0000485.1 MGP_CASTEiJ_G0000431.1 mouse_genomes_project 1 74626457 74628029 + TEC TEC MGP_CASTEiJ_T0099129.1 MGP_CASTEiJ_G0036042.1 mouse_genomes_project 1 154492694 154492827 - Gm25279 snRNA snRNA MGP_CASTEiJ_T0009304.1 MGP_CASTEiJ_G0007492.1 mouse_genomes_project 1 170648151 170648252 + Mir6347 miRNA miRNA MGP_CASTEiJ_T0018123.1 MGP_CASTEiJ_G0015182.1 mouse_genomes_project 1 7283673 7292338 - MGP_CASTEiJ_P0018123 Tcf24 protein_coding protein_coding MGP_CASTEiJ_T0018124.1 MGP_CASTEiJ_G0015182.1 mouse_genomes_project 1 7283681 7286315 - MGP_CASTEiJ_P0018124 Tcf24 protein_coding protein_coding MGP_CASTEiJ_T0020639.1 MGP_CASTEiJ_G0015670.1 mouse_genomes_project 1 93059807 93061050 + MGP_CASTEiJ_P0020639 Olfr1411 protein_coding protein_coding MGP_CASTEiJ_T0020846.1 MGP_CASTEiJ_G0015713.1 mouse_genomes_project 1 105310244 105548540 + MGP_CASTEiJ_P0020846 Cdh20 protein_coding protein_coding MGP_CASTEiJ_T0020847.1 MGP_CASTEiJ_G0015713.1 mouse_genomes_project 1 105495449 105547702 + MGP_CASTEiJ_P0020847 Cdh20 protein_coding unknown_likely_coding MGP_CASTEiJ_T0101951.1 MGP_CASTEiJ_G0038676.1 mouse_genomes_project 1 178075473 178076351 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099078.1 MGP_CASTEiJ_G0035991.1 mouse_genomes_project 1 31305540 31305640 + Gm25792 snRNA snRNA MGP_CASTEiJ_T0005881.1 MGP_CASTEiJ_G0004936.1 mouse_genomes_project 1 191438395 191441755 + A430105J06Rik lincRNA lincRNA MGP_CASTEiJ_T0000360.1 MGP_CASTEiJ_G0000309.1 mouse_genomes_project 1 14382971 14383798 + TEC TEC MGP_CASTEiJ_T0000720.1 MGP_CASTEiJ_G0000664.1 mouse_genomes_project 1 181696936 181698167 - TEC TEC MGP_CASTEiJ_T0101950.1 MGP_CASTEiJ_G0038675.1 mouse_genomes_project 1 178044257 178044711 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002835.1 MGP_CASTEiJ_G0002676.1 mouse_genomes_project 1 168108503 168118961 - Gm32569 antisense antisense MGP_CASTEiJ_T0002836.1 MGP_CASTEiJ_G0002676.1 mouse_genomes_project 1 168108629 168217661 - Gm32569 antisense antisense MGP_CASTEiJ_T0100287.1 MGP_CASTEiJ_G0037200.1 mouse_genomes_project 1 79306926 79307052 - Gm24160 snoRNA snoRNA MGP_CASTEiJ_T0022769.1 MGP_CASTEiJ_G0016103.1 mouse_genomes_project 1 174905361 174907715 - MGP_CASTEiJ_P0022769 Klhdc9 protein_coding protein_coding MGP_CASTEiJ_T0009281.1 MGP_CASTEiJ_G0007469.1 mouse_genomes_project 1 107148137 107148273 - Mir3473f miRNA miRNA MGP_CASTEiJ_T0002863.1 MGP_CASTEiJ_G0002699.1 mouse_genomes_project 1 185069928 185088840 - Gm37768 antisense antisense MGP_CASTEiJ_T0005875.1 MGP_CASTEiJ_G0004931.1 mouse_genomes_project 1 189959215 189964684 - 4930532G15Rik lincRNA lincRNA MGP_CASTEiJ_T0000688.1 MGP_CASTEiJ_G0000632.1 mouse_genomes_project 1 165720639 165722886 + TEC TEC MGP_CASTEiJ_T0099145.1 MGP_CASTEiJ_G0036058.1 mouse_genomes_project 1 186241632 186241726 - Gm23690 snRNA snRNA MGP_CASTEiJ_T0018037.1 MGP_CASTEiJ_G0015168.1 mouse_genomes_project 1 2849927 2852772 + Oprk1 protein_coding retained_intron MGP_CASTEiJ_T0018038.1 MGP_CASTEiJ_G0015168.1 mouse_genomes_project 1 2850405 2867598 + MGP_CASTEiJ_P0018038 Oprk1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0018039.1 MGP_CASTEiJ_G0015168.1 mouse_genomes_project 1 2857956 2864612 + Oprk1 protein_coding retained_intron MGP_CASTEiJ_T0005751.1 MGP_CASTEiJ_G0004836.1 mouse_genomes_project 1 137956491 137959300 + A430034D21Rik lincRNA lincRNA MGP_CASTEiJ_T0020947.1 MGP_CASTEiJ_G0015740.1 mouse_genomes_project 1 119025014 119037043 + MGP_CASTEiJ_P0020947 Nifk protein_coding protein_coding MGP_CASTEiJ_T0020948.1 MGP_CASTEiJ_G0015740.1 mouse_genomes_project 1 119025029 119036209 + MGP_CASTEiJ_P0020948 Nifk protein_coding protein_coding MGP_CASTEiJ_T0020949.1 MGP_CASTEiJ_G0015740.1 mouse_genomes_project 1 119025328 119032648 + MGP_CASTEiJ_P0020949 Nifk protein_coding protein_coding MGP_CASTEiJ_T0011769.1 MGP_CASTEiJ_G0009932.1 mouse_genomes_project 1 67570843 67571290 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002796.1 MGP_CASTEiJ_G0002644.1 mouse_genomes_project 1 136899824 136917773 + Gm26642 antisense antisense MGP_CASTEiJ_T0016348.1 MGP_CASTEiJ_G0014436.1 mouse_genomes_project 1 169092267 169100549 + Gm16565 processed_transcript sense_overlapping MGP_CASTEiJ_T0016349.1 MGP_CASTEiJ_G0014436.1 mouse_genomes_project 1 169092391 169093346 + Gm16565 processed_transcript processed_transcript MGP_CASTEiJ_T0023429.1 MGP_CASTEiJ_G0016269.1 mouse_genomes_project 1 193058359 193153686 + Ush2a protein_coding retained_intron MGP_CASTEiJ_T0023430.1 MGP_CASTEiJ_G0016269.1 mouse_genomes_project 1 193058371 193256663 + Ush2a protein_coding retained_intron MGP_CASTEiJ_T0023431.1 MGP_CASTEiJ_G0016269.1 mouse_genomes_project 1 193059371 193795821 + MGP_CASTEiJ_P0023431 Ush2a protein_coding protein_coding MGP_CASTEiJ_T0023432.1 MGP_CASTEiJ_G0016269.1 mouse_genomes_project 1 193349265 193503890 + Ush2a protein_coding retained_intron MGP_CASTEiJ_T0023433.1 MGP_CASTEiJ_G0016269.1 mouse_genomes_project 1 193782659 193795751 + MGP_CASTEiJ_P0023433 Ush2a protein_coding protein_coding MGP_CASTEiJ_T0099100.1 MGP_CASTEiJ_G0036013.1 mouse_genomes_project 1 87451760 87451855 - Gm23504 snRNA snRNA MGP_CASTEiJ_T0021662.1 MGP_CASTEiJ_G0015887.1 mouse_genomes_project 1 137922656 137943372 - MGP_CASTEiJ_P0021662 5730559C18Rik protein_coding protein_coding MGP_CASTEiJ_T0021663.1 MGP_CASTEiJ_G0015887.1 mouse_genomes_project 1 137929407 137939391 - MGP_CASTEiJ_P0021663 5730559C18Rik protein_coding protein_coding MGP_CASTEiJ_T0021664.1 MGP_CASTEiJ_G0015887.1 mouse_genomes_project 1 137929445 137939412 - MGP_CASTEiJ_P0021664 5730559C18Rik protein_coding protein_coding MGP_CASTEiJ_T0021665.1 MGP_CASTEiJ_G0015887.1 mouse_genomes_project 1 137932641 137936744 - 5730559C18Rik protein_coding retained_intron MGP_CASTEiJ_T0021666.1 MGP_CASTEiJ_G0015887.1 mouse_genomes_project 1 137935274 137943227 - MGP_CASTEiJ_P0021666 5730559C18Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021667.1 MGP_CASTEiJ_G0015887.1 mouse_genomes_project 1 137935295 137939121 - MGP_CASTEiJ_P0021667 5730559C18Rik protein_coding protein_coding MGP_CASTEiJ_T0021603.1 MGP_CASTEiJ_G0015877.1 mouse_genomes_project 1 137459953 137465605 + Tnni1 protein_coding processed_transcript MGP_CASTEiJ_T0021604.1 MGP_CASTEiJ_G0015877.1 mouse_genomes_project 1 137463540 137487261 + MGP_CASTEiJ_P0021604 Tnni1 protein_coding protein_coding MGP_CASTEiJ_T0021605.1 MGP_CASTEiJ_G0015877.1 mouse_genomes_project 1 137481004 137492653 + MGP_CASTEiJ_P0021605 Tnni1 protein_coding protein_coding MGP_CASTEiJ_T0021606.1 MGP_CASTEiJ_G0015877.1 mouse_genomes_project 1 137481023 137492299 + Tnni1 protein_coding processed_transcript MGP_CASTEiJ_T0021607.1 MGP_CASTEiJ_G0015877.1 mouse_genomes_project 1 137481023 137492653 + MGP_CASTEiJ_P0021607 Tnni1 protein_coding protein_coding MGP_CASTEiJ_T0021608.1 MGP_CASTEiJ_G0015877.1 mouse_genomes_project 1 137481113 137492365 + MGP_CASTEiJ_P0021608 Tnni1 protein_coding protein_coding MGP_CASTEiJ_T0021609.1 MGP_CASTEiJ_G0015877.1 mouse_genomes_project 1 137481121 137491395 + MGP_CASTEiJ_P0021609 Tnni1 protein_coding protein_coding MGP_CASTEiJ_T0021610.1 MGP_CASTEiJ_G0015877.1 mouse_genomes_project 1 137481435 137492653 + MGP_CASTEiJ_P0021610 Tnni1 protein_coding protein_coding MGP_CASTEiJ_T0021611.1 MGP_CASTEiJ_G0015877.1 mouse_genomes_project 1 137486695 137491569 + MGP_CASTEiJ_P0021611 Tnni1 protein_coding protein_coding MGP_CASTEiJ_T0022969.1 MGP_CASTEiJ_G0016167.1 mouse_genomes_project 1 178069187 178070134 + MGP_CASTEiJ_P0022969 Olfr424 protein_coding protein_coding MGP_CASTEiJ_T0011737.1 MGP_CASTEiJ_G0009900.1 mouse_genomes_project 1 59809552 59810893 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100299.1 MGP_CASTEiJ_G0037212.1 mouse_genomes_project 1 103430488 103430622 - Gm22034 snoRNA snoRNA MGP_CASTEiJ_T0098430.1 MGP_CASTEiJ_G0035361.1 mouse_genomes_project 1 89889291 89889406 + Gm25180 rRNA rRNA MGP_CASTEiJ_T0019223.1 MGP_CASTEiJ_G0015398.1 mouse_genomes_project 1 56969054 56970938 + Aox3 protein_coding retained_intron MGP_CASTEiJ_T0019224.1 MGP_CASTEiJ_G0015398.1 mouse_genomes_project 1 56969060 57056192 + MGP_CASTEiJ_P0019224 Aox3 protein_coding protein_coding MGP_CASTEiJ_T0019225.1 MGP_CASTEiJ_G0015398.1 mouse_genomes_project 1 56969062 56978335 + Aox3 protein_coding retained_intron MGP_CASTEiJ_T0019226.1 MGP_CASTEiJ_G0015398.1 mouse_genomes_project 1 56969110 56993681 + MGP_CASTEiJ_P0019226 Aox3 protein_coding protein_coding MGP_CASTEiJ_T0019227.1 MGP_CASTEiJ_G0015398.1 mouse_genomes_project 1 57024515 57027140 + Aox3 protein_coding retained_intron MGP_CASTEiJ_T0098730.1 MGP_CASTEiJ_G0035661.1 mouse_genomes_project 1 87817117 87817389 + Gm25395 scaRNA scaRNA MGP_CASTEiJ_T0016296.1 MGP_CASTEiJ_G0014426.1 mouse_genomes_project 1 136745271 136746209 - Ptprv processed_transcript retained_intron MGP_CASTEiJ_T0016297.1 MGP_CASTEiJ_G0014426.1 mouse_genomes_project 1 136745272 136769916 - Ptprv processed_transcript processed_transcript MGP_CASTEiJ_T0016298.1 MGP_CASTEiJ_G0014426.1 mouse_genomes_project 1 136745274 136746081 - Ptprv processed_transcript processed_transcript MGP_CASTEiJ_T0016299.1 MGP_CASTEiJ_G0014426.1 mouse_genomes_project 1 136745401 136746362 - Ptprv processed_transcript processed_transcript MGP_CASTEiJ_T0016300.1 MGP_CASTEiJ_G0014426.1 mouse_genomes_project 1 136746788 136747237 - Ptprv processed_transcript retained_intron MGP_CASTEiJ_T0016301.1 MGP_CASTEiJ_G0014426.1 mouse_genomes_project 1 136747047 136748313 - Ptprv processed_transcript retained_intron MGP_CASTEiJ_T0016302.1 MGP_CASTEiJ_G0014426.1 mouse_genomes_project 1 136747941 136748867 - Ptprv processed_transcript processed_transcript MGP_CASTEiJ_T0016303.1 MGP_CASTEiJ_G0014426.1 mouse_genomes_project 1 136763729 136769890 - Ptprv processed_transcript processed_transcript MGP_CASTEiJ_T0016304.1 MGP_CASTEiJ_G0014426.1 mouse_genomes_project 1 136763747 136765654 - Ptprv processed_transcript retained_intron MGP_CASTEiJ_T0016305.1 MGP_CASTEiJ_G0014426.1 mouse_genomes_project 1 136766872 136768484 - Ptprv processed_transcript processed_transcript MGP_CASTEiJ_T0016306.1 MGP_CASTEiJ_G0014426.1 mouse_genomes_project 1 136766982 136769865 - Ptprv processed_transcript processed_transcript MGP_CASTEiJ_T0000644.1 MGP_CASTEiJ_G0000588.1 mouse_genomes_project 1 153647867 153649962 + TEC TEC MGP_CASTEiJ_T0005807.1 MGP_CASTEiJ_G0004879.1 mouse_genomes_project 1 167750946 167752492 + Gm32391 lincRNA lincRNA MGP_CASTEiJ_T0022492.1 MGP_CASTEiJ_G0016042.1 mouse_genomes_project 1 168965232 169037924 - MGP_CASTEiJ_P0022492 Rcsd1 protein_coding protein_coding MGP_CASTEiJ_T0022493.1 MGP_CASTEiJ_G0016042.1 mouse_genomes_project 1 168967661 169037886 - MGP_CASTEiJ_P0022493 Rcsd1 protein_coding protein_coding MGP_CASTEiJ_T0022494.1 MGP_CASTEiJ_G0016042.1 mouse_genomes_project 1 168991639 169039232 - MGP_CASTEiJ_P0022494 Rcsd1 protein_coding protein_coding MGP_CASTEiJ_T0022495.1 MGP_CASTEiJ_G0016042.1 mouse_genomes_project 1 169034386 169039565 - Rcsd1 protein_coding retained_intron MGP_CASTEiJ_T0022496.1 MGP_CASTEiJ_G0016042.1 mouse_genomes_project 1 169038276 169039596 - Rcsd1 protein_coding processed_transcript MGP_CASTEiJ_T0000436.1 MGP_CASTEiJ_G0000382.1 mouse_genomes_project 1 52494623 52496084 + TEC TEC MGP_CASTEiJ_T0022928.1 MGP_CASTEiJ_G0016144.1 mouse_genomes_project 1 176894000 176895063 - MGP_CASTEiJ_P0022928 Olfr1406 protein_coding protein_coding MGP_CASTEiJ_T0022929.1 MGP_CASTEiJ_G0016144.1 mouse_genomes_project 1 176894727 176906712 - MGP_CASTEiJ_P0022929 Olfr1406 protein_coding protein_coding MGP_CASTEiJ_T0020650.1 MGP_CASTEiJ_G0015675.1 mouse_genomes_project 1 93304088 93335011 + MGP_CASTEiJ_P0020650 Gpc1 protein_coding protein_coding MGP_CASTEiJ_T0020651.1 MGP_CASTEiJ_G0015675.1 mouse_genomes_project 1 93304412 93308123 + Gpc1 protein_coding processed_transcript MGP_CASTEiJ_T0020652.1 MGP_CASTEiJ_G0015675.1 mouse_genomes_project 1 93327450 93330215 + Gpc1 protein_coding retained_intron MGP_CASTEiJ_T0020653.1 MGP_CASTEiJ_G0015675.1 mouse_genomes_project 1 93330808 93331760 + Gpc1 protein_coding retained_intron MGP_CASTEiJ_T0020654.1 MGP_CASTEiJ_G0015675.1 mouse_genomes_project 1 93331018 93331833 + Gpc1 protein_coding retained_intron MGP_CASTEiJ_T0011990.1 MGP_CASTEiJ_G0010153.1 mouse_genomes_project 1 174448854 174449149 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005885.1 MGP_CASTEiJ_G0004939.1 mouse_genomes_project 1 193042277 193054272 + Gm38064 lincRNA lincRNA MGP_CASTEiJ_T0011847.1 MGP_CASTEiJ_G0010010.1 mouse_genomes_project 1 108676172 108676358 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020465.1 MGP_CASTEiJ_G0015624.1 mouse_genomes_project 1 88080795 88081954 + MGP_CASTEiJ_P0020465 protein_coding protein_coding MGP_CASTEiJ_T0023016.1 MGP_CASTEiJ_G0016184.1 mouse_genomes_project 1 179849457 179881420 + MGP_CASTEiJ_P0023016 Exo1 protein_coding protein_coding MGP_CASTEiJ_T0023017.1 MGP_CASTEiJ_G0016184.1 mouse_genomes_project 1 179849670 179856455 + MGP_CASTEiJ_P0023017 Exo1 protein_coding protein_coding MGP_CASTEiJ_T0023018.1 MGP_CASTEiJ_G0016184.1 mouse_genomes_project 1 179849672 179859040 + MGP_CASTEiJ_P0023018 Exo1 protein_coding protein_coding MGP_CASTEiJ_T0023019.1 MGP_CASTEiJ_G0016184.1 mouse_genomes_project 1 179849689 179859062 + MGP_CASTEiJ_P0023019 Exo1 protein_coding protein_coding MGP_CASTEiJ_T0023020.1 MGP_CASTEiJ_G0016184.1 mouse_genomes_project 1 179850055 179859058 + MGP_CASTEiJ_P0023020 Exo1 protein_coding protein_coding MGP_CASTEiJ_T0023021.1 MGP_CASTEiJ_G0016184.1 mouse_genomes_project 1 179859860 179867905 + MGP_CASTEiJ_P0023021 Exo1 protein_coding protein_coding MGP_CASTEiJ_T0023022.1 MGP_CASTEiJ_G0016184.1 mouse_genomes_project 1 179868355 179876444 + MGP_CASTEiJ_P0023022 Exo1 protein_coding protein_coding MGP_CASTEiJ_T0023023.1 MGP_CASTEiJ_G0016184.1 mouse_genomes_project 1 179871979 179876261 + Exo1 protein_coding retained_intron MGP_CASTEiJ_T0023024.1 MGP_CASTEiJ_G0016184.1 mouse_genomes_project 1 179872117 179873867 + MGP_CASTEiJ_P0023024 Exo1 protein_coding protein_coding MGP_CASTEiJ_T0023025.1 MGP_CASTEiJ_G0016184.1 mouse_genomes_project 1 179875269 179876456 + Exo1 protein_coding processed_transcript MGP_CASTEiJ_T0100269.1 MGP_CASTEiJ_G0037182.1 mouse_genomes_project 1 42569294 42569419 + Gm26352 snoRNA snoRNA MGP_CASTEiJ_T0021992.1 MGP_CASTEiJ_G0015949.1 mouse_genomes_project 1 156645750 156697903 - MGP_CASTEiJ_P0021992 Teddm2 protein_coding protein_coding MGP_CASTEiJ_T0021993.1 MGP_CASTEiJ_G0015949.1 mouse_genomes_project 1 156645750 156647442 - MGP_CASTEiJ_P0021993 Teddm2 protein_coding protein_coding MGP_CASTEiJ_T0021996.1 MGP_CASTEiJ_G0015949.1 mouse_genomes_project 1 156694934 156697923 - Teddm2 protein_coding retained_intron MGP_CASTEiJ_T0022414.1 MGP_CASTEiJ_G0016025.1 mouse_genomes_project 1 167382903 167420239 + MGP_CASTEiJ_P0022414 Selp protein_coding protein_coding MGP_CASTEiJ_T0022415.1 MGP_CASTEiJ_G0016025.1 mouse_genomes_project 1 167411820 167413296 + Selp protein_coding retained_intron MGP_CASTEiJ_T0022416.1 MGP_CASTEiJ_G0016025.1 mouse_genomes_project 1 167412378 167419405 + MGP_CASTEiJ_P0022416 Selp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022417.1 MGP_CASTEiJ_G0016025.1 mouse_genomes_project 1 167415199 167420222 + Selp protein_coding retained_intron MGP_CASTEiJ_T0022418.1 MGP_CASTEiJ_G0016025.1 mouse_genomes_project 1 167417062 167419408 + Selp protein_coding retained_intron MGP_CASTEiJ_T0099097.1 MGP_CASTEiJ_G0036010.1 mouse_genomes_project 1 77652713 77652877 - Gm26263 snRNA snRNA MGP_CASTEiJ_T0005698.1 MGP_CASTEiJ_G0004793.1 mouse_genomes_project 1 105658670 105669651 + Gm29012 lincRNA lincRNA MGP_CASTEiJ_T0018805.1 MGP_CASTEiJ_G0015316.1 mouse_genomes_project 1 38443746 38484225 + MGP_CASTEiJ_P0018805 Il1r2 protein_coding protein_coding MGP_CASTEiJ_T0018806.1 MGP_CASTEiJ_G0015316.1 mouse_genomes_project 1 38456028 38498635 + MGP_CASTEiJ_P0018806 Il1r2 protein_coding protein_coding MGP_CASTEiJ_T0018807.1 MGP_CASTEiJ_G0015316.1 mouse_genomes_project 1 38456122 38498623 + MGP_CASTEiJ_P0018807 Il1r2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018808.1 MGP_CASTEiJ_G0015316.1 mouse_genomes_project 1 38457302 38473708 + MGP_CASTEiJ_P0018808 Il1r2 protein_coding protein_coding MGP_CASTEiJ_T0022125.1 MGP_CASTEiJ_G0015974.1 mouse_genomes_project 1 159702759 159840193 - MGP_CASTEiJ_P0022125 Ralgps2 protein_coding protein_coding MGP_CASTEiJ_T0022126.1 MGP_CASTEiJ_G0015974.1 mouse_genomes_project 1 159705347 159840190 - MGP_CASTEiJ_P0022126 Ralgps2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022127.1 MGP_CASTEiJ_G0015974.1 mouse_genomes_project 1 159705347 159840134 - MGP_CASTEiJ_P0022127 Ralgps2 protein_coding protein_coding MGP_CASTEiJ_T0022128.1 MGP_CASTEiJ_G0015974.1 mouse_genomes_project 1 159706294 159839978 - MGP_CASTEiJ_P0022128 Ralgps2 protein_coding protein_coding MGP_CASTEiJ_T0022129.1 MGP_CASTEiJ_G0015974.1 mouse_genomes_project 1 159706700 159840122 - MGP_CASTEiJ_P0022129 Ralgps2 protein_coding protein_coding MGP_CASTEiJ_T0022130.1 MGP_CASTEiJ_G0015974.1 mouse_genomes_project 1 159706706 159840199 - MGP_CASTEiJ_P0022130 Ralgps2 protein_coding protein_coding MGP_CASTEiJ_T0022131.1 MGP_CASTEiJ_G0015974.1 mouse_genomes_project 1 159707414 159712004 - Ralgps2 protein_coding retained_intron MGP_CASTEiJ_T0022132.1 MGP_CASTEiJ_G0015974.1 mouse_genomes_project 1 159711516 159840217 - MGP_CASTEiJ_P0022132 Ralgps2 protein_coding protein_coding MGP_CASTEiJ_T0022133.1 MGP_CASTEiJ_G0015974.1 mouse_genomes_project 1 159715012 159840158 - MGP_CASTEiJ_P0022133 Ralgps2 protein_coding protein_coding MGP_CASTEiJ_T0022134.1 MGP_CASTEiJ_G0015974.1 mouse_genomes_project 1 159717370 159840184 - MGP_CASTEiJ_P0022134 Ralgps2 protein_coding protein_coding MGP_CASTEiJ_T0022135.1 MGP_CASTEiJ_G0015974.1 mouse_genomes_project 1 159717389 159839409 - MGP_CASTEiJ_P0022135 Ralgps2 protein_coding protein_coding MGP_CASTEiJ_T0022136.1 MGP_CASTEiJ_G0015974.1 mouse_genomes_project 1 159726980 159729329 - Ralgps2 protein_coding retained_intron MGP_CASTEiJ_T0022137.1 MGP_CASTEiJ_G0015974.1 mouse_genomes_project 1 159727034 159731173 - Ralgps2 protein_coding retained_intron MGP_CASTEiJ_T0022140.1 MGP_CASTEiJ_G0015974.1 mouse_genomes_project 1 159782418 159839725 - MGP_CASTEiJ_P0022140 Ralgps2 protein_coding protein_coding MGP_CASTEiJ_T0022141.1 MGP_CASTEiJ_G0015974.1 mouse_genomes_project 1 159797461 159839372 - MGP_CASTEiJ_P0022141 Ralgps2 protein_coding protein_coding MGP_CASTEiJ_T0011829.1 MGP_CASTEiJ_G0009992.1 mouse_genomes_project 1 101196411 101196766 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021795.1 MGP_CASTEiJ_G0015913.1 mouse_genomes_project 1 146487920 146525897 - MGP_CASTEiJ_P0021795 Rgs13 protein_coding protein_coding MGP_CASTEiJ_T0021796.1 MGP_CASTEiJ_G0015913.1 mouse_genomes_project 1 146487933 146525800 - MGP_CASTEiJ_P0021796 Rgs13 protein_coding protein_coding MGP_CASTEiJ_T0101902.1 MGP_CASTEiJ_G0038627.1 mouse_genomes_project 1 15473172 15480308 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000655.1 MGP_CASTEiJ_G0000599.1 mouse_genomes_project 1 158863097 158864290 + TEC TEC MGP_CASTEiJ_T0020615.1 MGP_CASTEiJ_G0015664.1 mouse_genomes_project 1 92234406 92281126 + MGP_CASTEiJ_P0020615 Twist2 protein_coding protein_coding MGP_CASTEiJ_T0020616.1 MGP_CASTEiJ_G0015664.1 mouse_genomes_project 1 92234415 92236936 + MGP_CASTEiJ_P0020616 Twist2 protein_coding protein_coding MGP_CASTEiJ_T0020485.1 MGP_CASTEiJ_G0015635.1 mouse_genomes_project 1 88443874 88454944 + protein_coding processed_transcript MGP_CASTEiJ_T0000567.1 MGP_CASTEiJ_G0000513.1 mouse_genomes_project 1 124564705 124568670 - TEC TEC MGP_CASTEiJ_T0002781.1 MGP_CASTEiJ_G0002633.1 mouse_genomes_project 1 132657200 132658249 + Gm28914 antisense antisense MGP_CASTEiJ_T0011680.1 MGP_CASTEiJ_G0009843.1 mouse_genomes_project 1 44385619 44386800 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100290.1 MGP_CASTEiJ_G0037203.1 mouse_genomes_project 1 86305471 86305604 - Snora75 snoRNA snoRNA MGP_CASTEiJ_T0005724.1 MGP_CASTEiJ_G0004813.1 mouse_genomes_project 1 121713246 121722707 - Gm29348 lincRNA lincRNA MGP_CASTEiJ_T0011998.1 MGP_CASTEiJ_G0010161.1 mouse_genomes_project 1 180325264 180325781 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000444.1 MGP_CASTEiJ_G0000390.1 mouse_genomes_project 1 57666219 57670078 + TEC TEC MGP_CASTEiJ_T0005692.1 MGP_CASTEiJ_G0004788.1 mouse_genomes_project 1 97225195 97279517 - 4930533P14Rik lincRNA lincRNA MGP_CASTEiJ_T0023248.1 MGP_CASTEiJ_G0016231.1 mouse_genomes_project 1 186243350 186283512 - MGP_CASTEiJ_P0023248 Lbr protein_coding protein_coding MGP_CASTEiJ_T0023249.1 MGP_CASTEiJ_G0016231.1 mouse_genomes_project 1 186243371 186248547 - Lbr protein_coding retained_intron MGP_CASTEiJ_T0023250.1 MGP_CASTEiJ_G0016231.1 mouse_genomes_project 1 186247883 186263433 - MGP_CASTEiJ_P0023250 Lbr protein_coding protein_coding MGP_CASTEiJ_T0023251.1 MGP_CASTEiJ_G0016231.1 mouse_genomes_project 1 186249552 186263701 - Lbr protein_coding retained_intron MGP_CASTEiJ_T0023252.1 MGP_CASTEiJ_G0016231.1 mouse_genomes_project 1 186274360 186284185 - MGP_CASTEiJ_P0023252 Lbr protein_coding protein_coding MGP_CASTEiJ_T0023253.1 MGP_CASTEiJ_G0016231.1 mouse_genomes_project 1 186274389 186283494 - MGP_CASTEiJ_P0023253 Lbr protein_coding protein_coding MGP_CASTEiJ_T0023254.1 MGP_CASTEiJ_G0016231.1 mouse_genomes_project 1 186274534 186283998 - MGP_CASTEiJ_P0023254 Lbr protein_coding protein_coding MGP_CASTEiJ_T0023255.1 MGP_CASTEiJ_G0016231.1 mouse_genomes_project 1 186276727 186283459 - MGP_CASTEiJ_P0023255 Lbr protein_coding protein_coding MGP_CASTEiJ_T0002676.1 MGP_CASTEiJ_G0002555.1 mouse_genomes_project 1 34689712 34690399 - Gm38033 antisense antisense MGP_CASTEiJ_T0011961.1 MGP_CASTEiJ_G0010124.1 mouse_genomes_project 1 160552813 160553011 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000466.1 MGP_CASTEiJ_G0000412.1 mouse_genomes_project 1 65999376 66001938 - TEC TEC MGP_CASTEiJ_T0022698.1 MGP_CASTEiJ_G0016092.1 mouse_genomes_project 1 174761337 174762663 + MGP_CASTEiJ_P0022698 Apoa2 protein_coding protein_coding MGP_CASTEiJ_T0022699.1 MGP_CASTEiJ_G0016092.1 mouse_genomes_project 1 174761365 174762662 + MGP_CASTEiJ_P0022699 Apoa2 protein_coding protein_coding MGP_CASTEiJ_T0022700.1 MGP_CASTEiJ_G0016092.1 mouse_genomes_project 1 174761367 174762657 + MGP_CASTEiJ_P0022700 Apoa2 protein_coding protein_coding MGP_CASTEiJ_T0022701.1 MGP_CASTEiJ_G0016092.1 mouse_genomes_project 1 174761374 174762621 + MGP_CASTEiJ_P0022701 Apoa2 protein_coding protein_coding MGP_CASTEiJ_T0023348.1 MGP_CASTEiJ_G0016251.1 mouse_genomes_project 1 188537654 188538926 - 1700056E22Rik protein_coding antisense MGP_CASTEiJ_T0023349.1 MGP_CASTEiJ_G0016251.1 mouse_genomes_project 1 188537656 188538623 - MGP_CASTEiJ_P0023349 1700056E22Rik protein_coding protein_coding MGP_CASTEiJ_T0005665.1 MGP_CASTEiJ_G0004763.1 mouse_genomes_project 1 88923281 88925070 + Gm29336 lincRNA lincRNA MGP_CASTEiJ_T0000645.1 MGP_CASTEiJ_G0000589.1 mouse_genomes_project 1 154053200 154056318 + TEC TEC MGP_CASTEiJ_T0018918.1 MGP_CASTEiJ_G0015341.1 mouse_genomes_project 1 42837780 42839583 + Ercc5 protein_coding retained_intron MGP_CASTEiJ_T0018919.1 MGP_CASTEiJ_G0015341.1 mouse_genomes_project 1 42837883 42872643 + Ercc5 protein_coding retained_intron MGP_CASTEiJ_T0018920.1 MGP_CASTEiJ_G0015341.1 mouse_genomes_project 1 42837883 42872643 + MGP_CASTEiJ_P0018920 Ercc5 protein_coding protein_coding MGP_CASTEiJ_T0018921.1 MGP_CASTEiJ_G0015341.1 mouse_genomes_project 1 42837945 42851644 + Ercc5 protein_coding processed_transcript MGP_CASTEiJ_T0018922.1 MGP_CASTEiJ_G0015341.1 mouse_genomes_project 1 42837968 42848071 + Ercc5 protein_coding processed_transcript MGP_CASTEiJ_T0018923.1 MGP_CASTEiJ_G0015341.1 mouse_genomes_project 1 42846749 42857801 + Ercc5 protein_coding retained_intron MGP_CASTEiJ_T0018924.1 MGP_CASTEiJ_G0015341.1 mouse_genomes_project 1 42848645 42858020 + Ercc5 protein_coding retained_intron MGP_CASTEiJ_T0002837.1 MGP_CASTEiJ_G0002677.1 mouse_genomes_project 1 168806618 168807990 - Gm38325 antisense antisense MGP_CASTEiJ_T0021018.1 MGP_CASTEiJ_G0015749.1 mouse_genomes_project 1 120716945 120722254 - MGP_CASTEiJ_P0021018 Tmem177 protein_coding protein_coding MGP_CASTEiJ_T0022425.1 MGP_CASTEiJ_G0016029.1 mouse_genomes_project 1 167566886 167586721 - MGP_CASTEiJ_P0022425 Blzf1 protein_coding protein_coding MGP_CASTEiJ_T0022426.1 MGP_CASTEiJ_G0016029.1 mouse_genomes_project 1 167568478 167586726 - MGP_CASTEiJ_P0022426 Blzf1 protein_coding protein_coding MGP_CASTEiJ_T0022427.1 MGP_CASTEiJ_G0016029.1 mouse_genomes_project 1 167569219 167586726 - MGP_CASTEiJ_P0022427 Blzf1 protein_coding protein_coding MGP_CASTEiJ_T0022428.1 MGP_CASTEiJ_G0016029.1 mouse_genomes_project 1 167578756 167586502 - Blzf1 protein_coding processed_transcript MGP_CASTEiJ_T0022430.1 MGP_CASTEiJ_G0016029.1 mouse_genomes_project 1 167584423 167586708 - Blzf1 protein_coding retained_intron MGP_CASTEiJ_T0021111.1 MGP_CASTEiJ_G0015770.1 mouse_genomes_project 1 128689331 128875155 - MGP_CASTEiJ_P0021111 Tmem163 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021112.1 MGP_CASTEiJ_G0015770.1 mouse_genomes_project 1 128689343 128875080 - MGP_CASTEiJ_P0021112 Tmem163 protein_coding protein_coding MGP_CASTEiJ_T0021113.1 MGP_CASTEiJ_G0015770.1 mouse_genomes_project 1 128693651 128876608 - MGP_CASTEiJ_P0021113 Tmem163 protein_coding protein_coding MGP_CASTEiJ_T0021114.1 MGP_CASTEiJ_G0015770.1 mouse_genomes_project 1 128694113 128704493 - Tmem163 protein_coding retained_intron MGP_CASTEiJ_T0021115.1 MGP_CASTEiJ_G0015770.1 mouse_genomes_project 1 128694297 128743444 - Tmem163 protein_coding processed_transcript MGP_CASTEiJ_T0098442.1 MGP_CASTEiJ_G0035373.1 mouse_genomes_project 1 186281583 186281699 - Gm26004 rRNA rRNA MGP_CASTEiJ_T0002722.1 MGP_CASTEiJ_G0002591.1 mouse_genomes_project 1 68879368 68916726 + Gm29114 antisense antisense MGP_CASTEiJ_T0018382.1 MGP_CASTEiJ_G0015238.1 mouse_genomes_project 1 21745668 21819485 - MGP_CASTEiJ_P0018382 Fam135a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018383.1 MGP_CASTEiJ_G0015238.1 mouse_genomes_project 1 21745668 21764308 - MGP_CASTEiJ_P0018383 Fam135a protein_coding protein_coding MGP_CASTEiJ_T0018384.1 MGP_CASTEiJ_G0015238.1 mouse_genomes_project 1 21745820 21833411 - MGP_CASTEiJ_P0018384 Fam135a protein_coding protein_coding MGP_CASTEiJ_T0018385.1 MGP_CASTEiJ_G0015238.1 mouse_genomes_project 1 21746166 21833399 - MGP_CASTEiJ_P0018385 Fam135a protein_coding protein_coding MGP_CASTEiJ_T0018386.1 MGP_CASTEiJ_G0015238.1 mouse_genomes_project 1 21746179 21766643 - MGP_CASTEiJ_P0018386 Fam135a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018387.1 MGP_CASTEiJ_G0015238.1 mouse_genomes_project 1 21746256 21833550 - MGP_CASTEiJ_P0018387 Fam135a protein_coding protein_coding MGP_CASTEiJ_T0018388.1 MGP_CASTEiJ_G0015238.1 mouse_genomes_project 1 21760940 21766007 - MGP_CASTEiJ_P0018388 Fam135a protein_coding protein_coding MGP_CASTEiJ_T0018389.1 MGP_CASTEiJ_G0015238.1 mouse_genomes_project 1 21766278 21833433 - MGP_CASTEiJ_P0018389 Fam135a protein_coding protein_coding MGP_CASTEiJ_T0018390.1 MGP_CASTEiJ_G0015238.1 mouse_genomes_project 1 21789160 21833558 - Fam135a protein_coding retained_intron MGP_CASTEiJ_T0000351.1 MGP_CASTEiJ_G0000300.1 mouse_genomes_project 1 11068142 11069425 - TEC TEC MGP_CASTEiJ_T0011750.1 MGP_CASTEiJ_G0009913.1 mouse_genomes_project 1 62145236 62145604 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018872.1 MGP_CASTEiJ_G0015334.1 mouse_genomes_project 1 42409692 42491650 - MGP_CASTEiJ_P0018872 Uxs1 protein_coding protein_coding MGP_CASTEiJ_T0018873.1 MGP_CASTEiJ_G0015334.1 mouse_genomes_project 1 42412256 42491591 - MGP_CASTEiJ_P0018873 Uxs1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018874.1 MGP_CASTEiJ_G0015334.1 mouse_genomes_project 1 42427922 42491650 - MGP_CASTEiJ_P0018874 Uxs1 protein_coding protein_coding MGP_CASTEiJ_T0018875.1 MGP_CASTEiJ_G0015334.1 mouse_genomes_project 1 42434615 42490871 - Uxs1 protein_coding processed_transcript MGP_CASTEiJ_T0018876.1 MGP_CASTEiJ_G0015334.1 mouse_genomes_project 1 42434615 42491600 - MGP_CASTEiJ_P0018876 Uxs1 protein_coding protein_coding MGP_CASTEiJ_T0018877.1 MGP_CASTEiJ_G0015334.1 mouse_genomes_project 1 42437758 42491612 - Uxs1 protein_coding processed_transcript MGP_CASTEiJ_T0018878.1 MGP_CASTEiJ_G0015334.1 mouse_genomes_project 1 42441898 42491612 - MGP_CASTEiJ_P0018878 Uxs1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018879.1 MGP_CASTEiJ_G0015334.1 mouse_genomes_project 1 42452563 42491624 - MGP_CASTEiJ_P0018879 Uxs1 protein_coding protein_coding MGP_CASTEiJ_T0002681.1 MGP_CASTEiJ_G0002559.1 mouse_genomes_project 1 36083944 36090371 + Gm26805 antisense antisense MGP_CASTEiJ_T0000427.1 MGP_CASTEiJ_G0000373.1 mouse_genomes_project 1 42145350 42147945 + TEC TEC MGP_CASTEiJ_T0011767.1 MGP_CASTEiJ_G0009930.1 mouse_genomes_project 1 66212634 66214274 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000449.1 MGP_CASTEiJ_G0000395.1 mouse_genomes_project 1 58898591 58904073 + TEC TEC MGP_CASTEiJ_T0099136.1 MGP_CASTEiJ_G0036049.1 mouse_genomes_project 1 175378024 175378079 - Gm26412 snRNA snRNA MGP_CASTEiJ_T0000605.1 MGP_CASTEiJ_G0000550.1 mouse_genomes_project 1 137154182 137155201 - TEC TEC MGP_CASTEiJ_T0021085.1 MGP_CASTEiJ_G0015765.1 mouse_genomes_project 1 126648251 126656366 + MGP_CASTEiJ_P0021085 Slc35f5 protein_coding protein_coding MGP_CASTEiJ_T0021086.1 MGP_CASTEiJ_G0015765.1 mouse_genomes_project 1 126648672 126684639 + MGP_CASTEiJ_P0021086 Slc35f5 protein_coding protein_coding MGP_CASTEiJ_T0021087.1 MGP_CASTEiJ_G0015765.1 mouse_genomes_project 1 126673315 126683969 + MGP_CASTEiJ_P0021087 Slc35f5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000757.1 MGP_CASTEiJ_G0000699.1 mouse_genomes_project 1 196596332 196596944 + TEC TEC MGP_CASTEiJ_T0022943.1 MGP_CASTEiJ_G0016151.1 mouse_genomes_project 1 177082626 177204880 + MGP_CASTEiJ_P0022943 Aim2 protein_coding protein_coding MGP_CASTEiJ_T0022944.1 MGP_CASTEiJ_G0016151.1 mouse_genomes_project 1 177154920 177164100 + Aim2 protein_coding processed_transcript MGP_CASTEiJ_T0022945.1 MGP_CASTEiJ_G0016151.1 mouse_genomes_project 1 177156325 177198554 + MGP_CASTEiJ_P0022945 Aim2 protein_coding protein_coding MGP_CASTEiJ_T0022946.1 MGP_CASTEiJ_G0016151.1 mouse_genomes_project 1 177193836 177194461 + MGP_CASTEiJ_P0022946 Aim2 protein_coding protein_coding MGP_CASTEiJ_T0022947.1 MGP_CASTEiJ_G0016151.1 mouse_genomes_project 1 177194219 177200869 + Aim2 protein_coding processed_transcript MGP_CASTEiJ_T0022948.1 MGP_CASTEiJ_G0016151.1 mouse_genomes_project 1 177194219 177204872 + MGP_CASTEiJ_P0022948 Aim2 protein_coding protein_coding MGP_CASTEiJ_T0022949.1 MGP_CASTEiJ_G0016151.1 mouse_genomes_project 1 177194353 177195031 + Aim2 protein_coding processed_transcript MGP_CASTEiJ_T0010915.1 MGP_CASTEiJ_G0009103.1 mouse_genomes_project 1 48853864 48853996 - Gm27330 misc_RNA misc_RNA MGP_CASTEiJ_T0019855.1 MGP_CASTEiJ_G0015515.1 mouse_genomes_project 1 74430198 74445021 + MGP_CASTEiJ_P0019855 Wnt6 protein_coding protein_coding MGP_CASTEiJ_T0019856.1 MGP_CASTEiJ_G0015515.1 mouse_genomes_project 1 74442125 74444288 + Wnt6 protein_coding retained_intron MGP_CASTEiJ_T0000345.1 MGP_CASTEiJ_G0000294.1 mouse_genomes_project 1 10589861 10591873 - TEC TEC MGP_CASTEiJ_T0011817.1 MGP_CASTEiJ_G0009980.1 mouse_genomes_project 1 93930511 93931300 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011989.1 MGP_CASTEiJ_G0010152.1 mouse_genomes_project 1 173011914 173013061 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005513.1 MGP_CASTEiJ_G0004650.1 mouse_genomes_project 1 19633101 19635764 + Gm26580 lincRNA lincRNA MGP_CASTEiJ_T0005852.1 MGP_CASTEiJ_G0004915.1 mouse_genomes_project 1 186736742 186756415 + 1700047M11Rik lincRNA lincRNA MGP_CASTEiJ_T0005853.1 MGP_CASTEiJ_G0004915.1 mouse_genomes_project 1 186753893 186756377 + 1700047M11Rik lincRNA lincRNA MGP_CASTEiJ_T0020037.1 MGP_CASTEiJ_G0015543.1 mouse_genomes_project 1 75115220 75123156 - Obsl1 protein_coding retained_intron MGP_CASTEiJ_T0020042.1 MGP_CASTEiJ_G0015543.1 mouse_genomes_project 1 75121748 75144299 - MGP_CASTEiJ_P0020042 Obsl1 protein_coding protein_coding MGP_CASTEiJ_T0020043.1 MGP_CASTEiJ_G0015543.1 mouse_genomes_project 1 75122773 75123726 - Obsl1 protein_coding retained_intron MGP_CASTEiJ_T0020044.1 MGP_CASTEiJ_G0015543.1 mouse_genomes_project 1 75123145 75124002 - Obsl1 protein_coding retained_intron MGP_CASTEiJ_T0020045.1 MGP_CASTEiJ_G0015543.1 mouse_genomes_project 1 75126468 75143579 - MGP_CASTEiJ_P0020045 Obsl1 protein_coding protein_coding MGP_CASTEiJ_T0020046.1 MGP_CASTEiJ_G0015543.1 mouse_genomes_project 1 75126771 75128983 - MGP_CASTEiJ_P0020046 Obsl1 protein_coding protein_coding MGP_CASTEiJ_T0020047.1 MGP_CASTEiJ_G0015543.1 mouse_genomes_project 1 75126891 75127734 - Obsl1 protein_coding retained_intron MGP_CASTEiJ_T0020048.1 MGP_CASTEiJ_G0015543.1 mouse_genomes_project 1 75127280 75128547 - Obsl1 protein_coding processed_transcript MGP_CASTEiJ_T0020049.1 MGP_CASTEiJ_G0015543.1 mouse_genomes_project 1 75128317 75128957 - Obsl1 protein_coding retained_intron MGP_CASTEiJ_T0020050.1 MGP_CASTEiJ_G0015543.1 mouse_genomes_project 1 75132212 75144299 - MGP_CASTEiJ_P0020050 Obsl1 protein_coding protein_coding MGP_CASTEiJ_T0020051.1 MGP_CASTEiJ_G0015543.1 mouse_genomes_project 1 75132213 75141614 - Obsl1 protein_coding retained_intron MGP_CASTEiJ_T0020052.1 MGP_CASTEiJ_G0015543.1 mouse_genomes_project 1 75137539 75144390 - Obsl1 protein_coding retained_intron MGP_CASTEiJ_T0020053.1 MGP_CASTEiJ_G0015543.1 mouse_genomes_project 1 75137539 75144299 - Obsl1 protein_coding retained_intron MGP_CASTEiJ_T0005520.1 MGP_CASTEiJ_G0004656.1 mouse_genomes_project 1 25694930 25715078 + Gm5524 lincRNA lincRNA MGP_CASTEiJ_T0023203.1 MGP_CASTEiJ_G0016219.1 mouse_genomes_project 1 185247710 185253083 + protein_coding retained_intron MGP_CASTEiJ_T0100285.1 MGP_CASTEiJ_G0037198.1 mouse_genomes_project 1 66118050 66118180 + Gm25832 snoRNA snoRNA MGP_CASTEiJ_T0000594.1 MGP_CASTEiJ_G0000540.1 mouse_genomes_project 1 133346462 133346969 - TEC TEC MGP_CASTEiJ_T0002777.1 MGP_CASTEiJ_G0002631.1 mouse_genomes_project 1 132109987 132111182 - Gm28857 antisense antisense MGP_CASTEiJ_T0099133.1 MGP_CASTEiJ_G0036046.1 mouse_genomes_project 1 174340337 174340444 - Gm25235 snRNA snRNA MGP_CASTEiJ_T0018208.1 MGP_CASTEiJ_G0015192.1 mouse_genomes_project 1 10513846 10528782 - MGP_CASTEiJ_P0018208 Prdm14 protein_coding protein_coding MGP_CASTEiJ_T0099083.1 MGP_CASTEiJ_G0035996.1 mouse_genomes_project 1 46942781 46942902 - Gm23240 snRNA snRNA MGP_CASTEiJ_T0020370.1 MGP_CASTEiJ_G0015612.1 mouse_genomes_project 1 87223906 87239003 + MGP_CASTEiJ_P0020370 Eif4e2 protein_coding protein_coding MGP_CASTEiJ_T0020371.1 MGP_CASTEiJ_G0015612.1 mouse_genomes_project 1 87223906 87250657 + MGP_CASTEiJ_P0020371 Eif4e2 protein_coding protein_coding MGP_CASTEiJ_T0020372.1 MGP_CASTEiJ_G0015612.1 mouse_genomes_project 1 87223906 87244861 + MGP_CASTEiJ_P0020372 Eif4e2 protein_coding protein_coding MGP_CASTEiJ_T0020373.1 MGP_CASTEiJ_G0015612.1 mouse_genomes_project 1 87223906 87236754 + MGP_CASTEiJ_P0020373 Eif4e2 protein_coding protein_coding MGP_CASTEiJ_T0020374.1 MGP_CASTEiJ_G0015612.1 mouse_genomes_project 1 87223906 87250657 + MGP_CASTEiJ_P0020374 Eif4e2 protein_coding protein_coding MGP_CASTEiJ_T0020375.1 MGP_CASTEiJ_G0015612.1 mouse_genomes_project 1 87223931 87236747 + MGP_CASTEiJ_P0020375 Eif4e2 protein_coding protein_coding MGP_CASTEiJ_T0020376.1 MGP_CASTEiJ_G0015612.1 mouse_genomes_project 1 87223971 87236020 + MGP_CASTEiJ_P0020376 Eif4e2 protein_coding protein_coding MGP_CASTEiJ_T0020377.1 MGP_CASTEiJ_G0015612.1 mouse_genomes_project 1 87224278 87238211 + MGP_CASTEiJ_P0020377 Eif4e2 protein_coding protein_coding MGP_CASTEiJ_T0022187.1 MGP_CASTEiJ_G0015983.1 mouse_genomes_project 1 162294075 162315409 + MGP_CASTEiJ_P0022187 Rfwd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022188.1 MGP_CASTEiJ_G0015983.1 mouse_genomes_project 1 162294077 162422581 + MGP_CASTEiJ_P0022188 Rfwd2 protein_coding protein_coding MGP_CASTEiJ_T0022189.1 MGP_CASTEiJ_G0015983.1 mouse_genomes_project 1 162294399 162355242 + MGP_CASTEiJ_P0022189 Rfwd2 protein_coding protein_coding MGP_CASTEiJ_T0022190.1 MGP_CASTEiJ_G0015983.1 mouse_genomes_project 1 162294441 162315432 + MGP_CASTEiJ_P0022190 Rfwd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022191.1 MGP_CASTEiJ_G0015983.1 mouse_genomes_project 1 162301858 162332246 + Rfwd2 protein_coding retained_intron MGP_CASTEiJ_T0022192.1 MGP_CASTEiJ_G0015983.1 mouse_genomes_project 1 162313396 162373913 + MGP_CASTEiJ_P0022192 Rfwd2 protein_coding protein_coding MGP_CASTEiJ_T0022193.1 MGP_CASTEiJ_G0015983.1 mouse_genomes_project 1 162323942 162375813 + MGP_CASTEiJ_P0022193 Rfwd2 protein_coding protein_coding MGP_CASTEiJ_T0022194.1 MGP_CASTEiJ_G0015983.1 mouse_genomes_project 1 162331993 162340014 + Rfwd2 protein_coding retained_intron MGP_CASTEiJ_T0022195.1 MGP_CASTEiJ_G0015983.1 mouse_genomes_project 1 162373951 162377340 + Rfwd2 protein_coding retained_intron MGP_CASTEiJ_T0022196.1 MGP_CASTEiJ_G0015983.1 mouse_genomes_project 1 162373962 162394317 + MGP_CASTEiJ_P0022196 Rfwd2 protein_coding protein_coding MGP_CASTEiJ_T0022197.1 MGP_CASTEiJ_G0015983.1 mouse_genomes_project 1 162375758 162394397 + Rfwd2 protein_coding retained_intron MGP_CASTEiJ_T0022198.1 MGP_CASTEiJ_G0015983.1 mouse_genomes_project 1 162390258 162395245 + Rfwd2 protein_coding retained_intron MGP_CASTEiJ_T0022199.1 MGP_CASTEiJ_G0015983.1 mouse_genomes_project 1 162416518 162420025 + Rfwd2 protein_coding retained_intron MGP_CASTEiJ_T0005709.1 MGP_CASTEiJ_G0004801.1 mouse_genomes_project 1 114162974 114163985 + Gm28189 lincRNA lincRNA MGP_CASTEiJ_T0005699.1 MGP_CASTEiJ_G0004794.1 mouse_genomes_project 1 106558705 106569655 - Gm7160 lincRNA lincRNA MGP_CASTEiJ_T0005700.1 MGP_CASTEiJ_G0004794.1 mouse_genomes_project 1 106568595 106569625 - Gm7160 lincRNA lincRNA MGP_CASTEiJ_T0016273.1 MGP_CASTEiJ_G0014416.1 mouse_genomes_project 1 74514467 74547259 + Gm16582 processed_transcript processed_transcript MGP_CASTEiJ_T0020982.1 MGP_CASTEiJ_G0015743.1 mouse_genomes_project 1 119576848 119810417 - MGP_CASTEiJ_P0020982 Gli2 protein_coding protein_coding MGP_CASTEiJ_T0020983.1 MGP_CASTEiJ_G0015743.1 mouse_genomes_project 1 119577827 119598939 - MGP_CASTEiJ_P0020983 Gli2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020984.1 MGP_CASTEiJ_G0015743.1 mouse_genomes_project 1 119591757 119810137 - MGP_CASTEiJ_P0020984 Gli2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020985.1 MGP_CASTEiJ_G0015743.1 mouse_genomes_project 1 119591757 119810137 - MGP_CASTEiJ_P0020985 Gli2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020986.1 MGP_CASTEiJ_G0015743.1 mouse_genomes_project 1 119591757 119810137 - MGP_CASTEiJ_P0020986 Gli2 protein_coding protein_coding MGP_CASTEiJ_T0020987.1 MGP_CASTEiJ_G0015743.1 mouse_genomes_project 1 119591757 119810137 - MGP_CASTEiJ_P0020987 Gli2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020988.1 MGP_CASTEiJ_G0015743.1 mouse_genomes_project 1 119591757 119810137 - MGP_CASTEiJ_P0020988 Gli2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020989.1 MGP_CASTEiJ_G0015743.1 mouse_genomes_project 1 119591759 119810137 - MGP_CASTEiJ_P0020989 Gli2 protein_coding protein_coding MGP_CASTEiJ_T0020990.1 MGP_CASTEiJ_G0015743.1 mouse_genomes_project 1 119591759 119810137 - MGP_CASTEiJ_P0020990 Gli2 protein_coding protein_coding MGP_CASTEiJ_T0020991.1 MGP_CASTEiJ_G0015743.1 mouse_genomes_project 1 119612871 119737077 - Gli2 protein_coding processed_transcript MGP_CASTEiJ_T0002872.1 MGP_CASTEiJ_G0002706.1 mouse_genomes_project 1 190038294 190050763 - 9630028B13Rik antisense antisense MGP_CASTEiJ_T0005771.1 MGP_CASTEiJ_G0004852.1 mouse_genomes_project 1 151620288 151642826 + Gm29020 lincRNA lincRNA MGP_CASTEiJ_T0021516.1 MGP_CASTEiJ_G0015859.1 mouse_genomes_project 1 136134446 136143238 - MGP_CASTEiJ_P0021516 Mgat4e protein_coding protein_coding MGP_CASTEiJ_T0021517.1 MGP_CASTEiJ_G0015859.1 mouse_genomes_project 1 136134452 136140536 - MGP_CASTEiJ_P0021517 Mgat4e protein_coding protein_coding MGP_CASTEiJ_T0021518.1 MGP_CASTEiJ_G0015859.1 mouse_genomes_project 1 136134462 136140464 - MGP_CASTEiJ_P0021518 Mgat4e protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011955.1 MGP_CASTEiJ_G0010118.1 mouse_genomes_project 1 158740936 158741195 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023631.1 MGP_CASTEiJ_G0016305.1 mouse_genomes_project 1 198206494 198207727 + Lamb3 protein_coding retained_intron MGP_CASTEiJ_T0023632.1 MGP_CASTEiJ_G0016305.1 mouse_genomes_project 1 198206520 198350843 + MGP_CASTEiJ_P0023632 Lamb3 protein_coding protein_coding MGP_CASTEiJ_T0023633.1 MGP_CASTEiJ_G0016305.1 mouse_genomes_project 1 198206527 198332929 + MGP_CASTEiJ_P0023633 Lamb3 protein_coding protein_coding MGP_CASTEiJ_T0023634.1 MGP_CASTEiJ_G0016305.1 mouse_genomes_project 1 198206545 198254875 + Lamb3 protein_coding processed_transcript MGP_CASTEiJ_T0023643.1 MGP_CASTEiJ_G0016305.1 mouse_genomes_project 1 198275885 198284415 + Lamb3 protein_coding processed_transcript MGP_CASTEiJ_T0023644.1 MGP_CASTEiJ_G0016305.1 mouse_genomes_project 1 198307549 198350843 + MGP_CASTEiJ_P0023644 Lamb3 protein_coding protein_coding MGP_CASTEiJ_T0023645.1 MGP_CASTEiJ_G0016305.1 mouse_genomes_project 1 198307778 198308943 + Lamb3 protein_coding processed_transcript MGP_CASTEiJ_T0023646.1 MGP_CASTEiJ_G0016305.1 mouse_genomes_project 1 198307800 198350840 + MGP_CASTEiJ_P0023646 Lamb3 protein_coding protein_coding MGP_CASTEiJ_T0023647.1 MGP_CASTEiJ_G0016305.1 mouse_genomes_project 1 198327564 198332928 + Lamb3 protein_coding processed_transcript MGP_CASTEiJ_T0023352.1 MGP_CASTEiJ_G0016252.1 mouse_genomes_project 1 189275289 189281817 - MGP_CASTEiJ_P0023352 Hlx protein_coding protein_coding MGP_CASTEiJ_T0023353.1 MGP_CASTEiJ_G0016252.1 mouse_genomes_project 1 189275296 189279681 - MGP_CASTEiJ_P0023353 Hlx protein_coding protein_coding MGP_CASTEiJ_T0019378.1 MGP_CASTEiJ_G0015425.1 mouse_genomes_project 1 59070094 59093457 - MGP_CASTEiJ_P0019378 Wdr12 protein_coding protein_coding MGP_CASTEiJ_T0019379.1 MGP_CASTEiJ_G0015425.1 mouse_genomes_project 1 59070094 59092958 - MGP_CASTEiJ_P0019379 Wdr12 protein_coding protein_coding MGP_CASTEiJ_T0019380.1 MGP_CASTEiJ_G0015425.1 mouse_genomes_project 1 59077924 59080598 - Wdr12 protein_coding retained_intron MGP_CASTEiJ_T0019381.1 MGP_CASTEiJ_G0015425.1 mouse_genomes_project 1 59078634 59080775 - Wdr12 protein_coding processed_transcript MGP_CASTEiJ_T0019382.1 MGP_CASTEiJ_G0015425.1 mouse_genomes_project 1 59082869 59092947 - MGP_CASTEiJ_P0019382 Wdr12 protein_coding protein_coding MGP_CASTEiJ_T0019383.1 MGP_CASTEiJ_G0015425.1 mouse_genomes_project 1 59082869 59092937 - MGP_CASTEiJ_P0019383 Wdr12 protein_coding protein_coding MGP_CASTEiJ_T0019384.1 MGP_CASTEiJ_G0015425.1 mouse_genomes_project 1 59088817 59092508 - Wdr12 protein_coding retained_intron MGP_CASTEiJ_T0021232.1 MGP_CASTEiJ_G0015798.1 mouse_genomes_project 1 132523017 132534772 - MGP_CASTEiJ_P0021232 Dyrk3 protein_coding protein_coding MGP_CASTEiJ_T0021233.1 MGP_CASTEiJ_G0015798.1 mouse_genomes_project 1 132525444 132534677 - MGP_CASTEiJ_P0021233 Dyrk3 protein_coding protein_coding MGP_CASTEiJ_T0101920.1 MGP_CASTEiJ_G0038645.1 mouse_genomes_project 1 88269705 88269920 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101924.1 MGP_CASTEiJ_G0038649.1 mouse_genomes_project 1 93036062 93036244 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101918.1 MGP_CASTEiJ_G0038643.1 mouse_genomes_project 1 88266945 88267789 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0022454.1 MGP_CASTEiJ_G0016036.1 mouse_genomes_project 1 168530996 168561063 - MGP_CASTEiJ_P0022454 Tiprl protein_coding protein_coding MGP_CASTEiJ_T0022455.1 MGP_CASTEiJ_G0016036.1 mouse_genomes_project 1 168534274 168535218 - Tiprl protein_coding retained_intron MGP_CASTEiJ_T0022456.1 MGP_CASTEiJ_G0016036.1 mouse_genomes_project 1 168534418 168561116 - MGP_CASTEiJ_P0022456 Tiprl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022457.1 MGP_CASTEiJ_G0016036.1 mouse_genomes_project 1 168542985 168561042 - Tiprl protein_coding processed_transcript MGP_CASTEiJ_T0022458.1 MGP_CASTEiJ_G0016036.1 mouse_genomes_project 1 168547951 168560649 - MGP_CASTEiJ_P0022458 Tiprl protein_coding protein_coding MGP_CASTEiJ_T0022459.1 MGP_CASTEiJ_G0016036.1 mouse_genomes_project 1 168548801 168561052 - Tiprl protein_coding processed_transcript MGP_CASTEiJ_T0011869.1 MGP_CASTEiJ_G0010032.1 mouse_genomes_project 1 118572344 118572818 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000480.1 MGP_CASTEiJ_G0000426.1 mouse_genomes_project 1 71327892 71331397 - TEC TEC MGP_CASTEiJ_T0022968.1 MGP_CASTEiJ_G0016166.1 mouse_genomes_project 1 178049915 178050839 - MGP_CASTEiJ_P0022968 Olfr231 protein_coding protein_coding MGP_CASTEiJ_T0022770.1 MGP_CASTEiJ_G0016104.1 mouse_genomes_project 1 174916714 174936310 + MGP_CASTEiJ_P0022770 Nectin4 protein_coding protein_coding MGP_CASTEiJ_T0022771.1 MGP_CASTEiJ_G0016104.1 mouse_genomes_project 1 174916967 174936621 + MGP_CASTEiJ_P0022771 Nectin4 protein_coding protein_coding MGP_CASTEiJ_T0022772.1 MGP_CASTEiJ_G0016104.1 mouse_genomes_project 1 174916970 174936308 + MGP_CASTEiJ_P0022772 Nectin4 protein_coding protein_coding MGP_CASTEiJ_T0022926.1 MGP_CASTEiJ_G0016143.1 mouse_genomes_project 1 176843795 176856954 - MGP_CASTEiJ_P0022926 Olfr1408 protein_coding protein_coding MGP_CASTEiJ_T0022927.1 MGP_CASTEiJ_G0016143.1 mouse_genomes_project 1 176843795 176844832 - MGP_CASTEiJ_P0022927 Olfr1408 protein_coding protein_coding MGP_CASTEiJ_T0002852.1 MGP_CASTEiJ_G0002689.1 mouse_genomes_project 1 175877367 175878027 + Gm17224 antisense antisense MGP_CASTEiJ_T0023073.1 MGP_CASTEiJ_G0016195.1 mouse_genomes_project 1 182477951 182481127 + Cox20 protein_coding retained_intron MGP_CASTEiJ_T0023074.1 MGP_CASTEiJ_G0016195.1 mouse_genomes_project 1 182477951 182481485 + MGP_CASTEiJ_P0023074 Cox20 protein_coding protein_coding MGP_CASTEiJ_T0009246.1 MGP_CASTEiJ_G0007434.1 mouse_genomes_project 1 52554255 52554327 + Mir7681 miRNA miRNA MGP_CASTEiJ_T0023223.1 MGP_CASTEiJ_G0016225.1 mouse_genomes_project 1 185458494 185519659 - MGP_CASTEiJ_P0023223 Nvl protein_coding protein_coding MGP_CASTEiJ_T0023224.1 MGP_CASTEiJ_G0016225.1 mouse_genomes_project 1 185463016 185465185 - Nvl protein_coding processed_transcript MGP_CASTEiJ_T0023225.1 MGP_CASTEiJ_G0016225.1 mouse_genomes_project 1 185464671 185466945 - Nvl protein_coding retained_intron MGP_CASTEiJ_T0023226.1 MGP_CASTEiJ_G0016225.1 mouse_genomes_project 1 185467401 185476400 - Nvl protein_coding retained_intron MGP_CASTEiJ_T0023227.1 MGP_CASTEiJ_G0016225.1 mouse_genomes_project 1 185511430 185513840 - Nvl protein_coding retained_intron MGP_CASTEiJ_T0011667.1 MGP_CASTEiJ_G0009830.1 mouse_genomes_project 1 42447682 42448961 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022332.1 MGP_CASTEiJ_G0016006.1 mouse_genomes_project 1 165814040 165844004 + MGP_CASTEiJ_P0022332 Vamp4 protein_coding protein_coding MGP_CASTEiJ_T0022333.1 MGP_CASTEiJ_G0016006.1 mouse_genomes_project 1 165814152 165827134 + Vamp4 protein_coding retained_intron MGP_CASTEiJ_T0022334.1 MGP_CASTEiJ_G0016006.1 mouse_genomes_project 1 165814164 165839489 + MGP_CASTEiJ_P0022334 Vamp4 protein_coding protein_coding MGP_CASTEiJ_T0022335.1 MGP_CASTEiJ_G0016006.1 mouse_genomes_project 1 165814353 165843998 + MGP_CASTEiJ_P0022335 Vamp4 protein_coding protein_coding MGP_CASTEiJ_T0022336.1 MGP_CASTEiJ_G0016006.1 mouse_genomes_project 1 165818353 165839668 + Vamp4 protein_coding processed_transcript MGP_CASTEiJ_T0100337.1 MGP_CASTEiJ_G0037250.1 mouse_genomes_project 1 168878894 168879021 - Gm23208 snoRNA snoRNA MGP_CASTEiJ_T0100278.1 MGP_CASTEiJ_G0037191.1 mouse_genomes_project 1 58645785 58645866 + Gm26287 snoRNA snoRNA MGP_CASTEiJ_T0019606.1 MGP_CASTEiJ_G0015468.1 mouse_genomes_project 1 65942974 66033856 - MGP_CASTEiJ_P0019606 Kansl1l protein_coding protein_coding MGP_CASTEiJ_T0019607.1 MGP_CASTEiJ_G0015468.1 mouse_genomes_project 1 65943573 66050397 - MGP_CASTEiJ_P0019607 Kansl1l protein_coding protein_coding MGP_CASTEiJ_T0019608.1 MGP_CASTEiJ_G0015468.1 mouse_genomes_project 1 65961407 66050413 - MGP_CASTEiJ_P0019608 Kansl1l protein_coding protein_coding MGP_CASTEiJ_T0019609.1 MGP_CASTEiJ_G0015468.1 mouse_genomes_project 1 66008193 66040537 - Kansl1l protein_coding processed_transcript MGP_CASTEiJ_T0019610.1 MGP_CASTEiJ_G0015468.1 mouse_genomes_project 1 66032459 66050397 - Kansl1l protein_coding retained_intron MGP_CASTEiJ_T0009311.1 MGP_CASTEiJ_G0007499.1 mouse_genomes_project 1 180769124 180769223 - Mir350 miRNA miRNA MGP_CASTEiJ_T0011972.1 MGP_CASTEiJ_G0010135.1 mouse_genomes_project 1 165876306 165877017 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005498.1 MGP_CASTEiJ_G0004639.1 mouse_genomes_project 1 6935497 6936820 - Gm29520 lincRNA lincRNA MGP_CASTEiJ_T0000341.1 MGP_CASTEiJ_G0000290.1 mouse_genomes_project 1 8725814 8728857 - TEC TEC MGP_CASTEiJ_T0009296.1 MGP_CASTEiJ_G0007484.1 mouse_genomes_project 1 161494060 161494169 + Mir488 miRNA miRNA MGP_CASTEiJ_T0018499.1 MGP_CASTEiJ_G0015259.1 mouse_genomes_project 1 32479554 32483979 - MGP_CASTEiJ_P0018499 Ccdc115 protein_coding unknown_likely_coding MGP_CASTEiJ_T0018137.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7363995 7365338 + Cspp1 protein_coding retained_intron MGP_CASTEiJ_T0018138.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7364014 7376995 + MGP_CASTEiJ_P0018138 Cspp1 protein_coding protein_coding MGP_CASTEiJ_T0018139.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7364225 7466552 + MGP_CASTEiJ_P0018139 Cspp1 protein_coding protein_coding MGP_CASTEiJ_T0018140.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7364234 7391532 + Cspp1 protein_coding retained_intron MGP_CASTEiJ_T0018141.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7364257 7388815 + Cspp1 protein_coding retained_intron MGP_CASTEiJ_T0018142.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7364270 7396744 + MGP_CASTEiJ_P0018142 Cspp1 protein_coding protein_coding MGP_CASTEiJ_T0018143.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7365761 7388639 + Cspp1 protein_coding retained_intron MGP_CASTEiJ_T0018144.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7365767 7397600 + MGP_CASTEiJ_P0018144 Cspp1 protein_coding protein_coding MGP_CASTEiJ_T0018145.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7365767 7397958 + MGP_CASTEiJ_P0018145 Cspp1 protein_coding protein_coding MGP_CASTEiJ_T0018146.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7365771 7388625 + Cspp1 protein_coding retained_intron MGP_CASTEiJ_T0018147.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7365779 7396731 + MGP_CASTEiJ_P0018147 Cspp1 protein_coding protein_coding MGP_CASTEiJ_T0018148.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7365817 7389752 + Cspp1 protein_coding retained_intron MGP_CASTEiJ_T0018149.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7366149 7388590 + MGP_CASTEiJ_P0018149 Cspp1 protein_coding protein_coding MGP_CASTEiJ_T0018150.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7375949 7465931 + MGP_CASTEiJ_P0018150 Cspp1 protein_coding protein_coding MGP_CASTEiJ_T0018151.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7386684 7396204 + MGP_CASTEiJ_P0018151 Cspp1 protein_coding protein_coding MGP_CASTEiJ_T0018152.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7400841 7405869 + Cspp1 protein_coding retained_intron MGP_CASTEiJ_T0018153.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7404022 7416435 + Cspp1 protein_coding retained_intron MGP_CASTEiJ_T0018154.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7404534 7414995 + Cspp1 protein_coding retained_intron MGP_CASTEiJ_T0018155.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7404587 7420859 + MGP_CASTEiJ_P0018155 Cspp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018156.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7418364 7420921 + Cspp1 protein_coding retained_intron MGP_CASTEiJ_T0018157.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7426526 7438935 + Cspp1 protein_coding retained_intron MGP_CASTEiJ_T0018158.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7434656 7438924 + Cspp1 protein_coding retained_intron MGP_CASTEiJ_T0018159.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7444005 7464176 + MGP_CASTEiJ_P0018159 Cspp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018160.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7446552 7447861 + Cspp1 protein_coding retained_intron MGP_CASTEiJ_T0018161.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7454969 7460027 + Cspp1 protein_coding retained_intron MGP_CASTEiJ_T0018162.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7459967 7463466 + Cspp1 protein_coding retained_intron MGP_CASTEiJ_T0018163.1 MGP_CASTEiJ_G0015185.1 mouse_genomes_project 1 7463972 7466108 + Cspp1 protein_coding retained_intron MGP_CASTEiJ_T0012033.1 MGP_CASTEiJ_G0010196.1 mouse_genomes_project 1 198050281 198050396 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005810.1 MGP_CASTEiJ_G0004882.1 mouse_genomes_project 1 167943005 167966359 - lincRNA lincRNA MGP_CASTEiJ_T0011648.1 MGP_CASTEiJ_G0009811.1 mouse_genomes_project 1 32688964 32689416 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000619.1 MGP_CASTEiJ_G0000563.1 mouse_genomes_project 1 139837899 139839027 + TEC TEC MGP_CASTEiJ_T0011766.1 MGP_CASTEiJ_G0009929.1 mouse_genomes_project 1 66015118 66017649 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021223.1 MGP_CASTEiJ_G0015794.1 mouse_genomes_project 1 132282742 132289121 - MGP_CASTEiJ_P0021223 Il20 protein_coding protein_coding MGP_CASTEiJ_T0021224.1 MGP_CASTEiJ_G0015794.1 mouse_genomes_project 1 132283173 132288896 - MGP_CASTEiJ_P0021224 Il20 protein_coding protein_coding MGP_CASTEiJ_T0005523.1 MGP_CASTEiJ_G0004659.1 mouse_genomes_project 1 28961505 28962837 + Gm28644 lincRNA lincRNA MGP_CASTEiJ_T0011744.1 MGP_CASTEiJ_G0009907.1 mouse_genomes_project 1 60171983 60174609 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000646.1 MGP_CASTEiJ_G0000590.1 mouse_genomes_project 1 154108459 154111482 - TEC TEC MGP_CASTEiJ_T0011963.1 MGP_CASTEiJ_G0010126.1 mouse_genomes_project 1 162207405 162207888 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023003.1 MGP_CASTEiJ_G0016180.1 mouse_genomes_project 1 179581236 179626662 + MGP_CASTEiJ_P0023003 Kmo protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023004.1 MGP_CASTEiJ_G0016180.1 mouse_genomes_project 1 179596923 179627553 + MGP_CASTEiJ_P0023004 Kmo protein_coding protein_coding MGP_CASTEiJ_T0023005.1 MGP_CASTEiJ_G0016180.1 mouse_genomes_project 1 179596928 179620783 + Kmo protein_coding retained_intron MGP_CASTEiJ_T0023006.1 MGP_CASTEiJ_G0016180.1 mouse_genomes_project 1 179596953 179602321 + Kmo protein_coding processed_transcript MGP_CASTEiJ_T0023007.1 MGP_CASTEiJ_G0016180.1 mouse_genomes_project 1 179597107 179628767 + MGP_CASTEiJ_P0023007 Kmo protein_coding protein_coding MGP_CASTEiJ_T0023008.1 MGP_CASTEiJ_G0016180.1 mouse_genomes_project 1 179597166 179615115 + Kmo protein_coding processed_transcript MGP_CASTEiJ_T0018541.1 MGP_CASTEiJ_G0015270.1 mouse_genomes_project 1 34276927 34385514 - MGP_CASTEiJ_P0018541 Uggt1 protein_coding protein_coding MGP_CASTEiJ_T0018542.1 MGP_CASTEiJ_G0015270.1 mouse_genomes_project 1 34282065 34304345 - Uggt1 protein_coding retained_intron MGP_CASTEiJ_T0018543.1 MGP_CASTEiJ_G0015270.1 mouse_genomes_project 1 34282069 34385370 - MGP_CASTEiJ_P0018543 Uggt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018544.1 MGP_CASTEiJ_G0015270.1 mouse_genomes_project 1 34284743 34289144 - Uggt1 protein_coding retained_intron MGP_CASTEiJ_T0018545.1 MGP_CASTEiJ_G0015270.1 mouse_genomes_project 1 34300345 34311957 - MGP_CASTEiJ_P0018545 Uggt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018546.1 MGP_CASTEiJ_G0015270.1 mouse_genomes_project 1 34300825 34321173 - MGP_CASTEiJ_P0018546 Uggt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018547.1 MGP_CASTEiJ_G0015270.1 mouse_genomes_project 1 34301978 34303472 - Uggt1 protein_coding retained_intron MGP_CASTEiJ_T0018548.1 MGP_CASTEiJ_G0015270.1 mouse_genomes_project 1 34317181 34385316 - Uggt1 protein_coding retained_intron MGP_CASTEiJ_T0018549.1 MGP_CASTEiJ_G0015270.1 mouse_genomes_project 1 34324412 34350585 - MGP_CASTEiJ_P0018549 Uggt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018550.1 MGP_CASTEiJ_G0015270.1 mouse_genomes_project 1 34335461 34347368 - Uggt1 protein_coding retained_intron MGP_CASTEiJ_T0018551.1 MGP_CASTEiJ_G0015270.1 mouse_genomes_project 1 34384845 34385957 - Uggt1 protein_coding retained_intron MGP_CASTEiJ_T0011773.1 MGP_CASTEiJ_G0009936.1 mouse_genomes_project 1 71181033 71181339 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000674.1 MGP_CASTEiJ_G0000618.1 mouse_genomes_project 1 163701307 163706090 - TEC TEC MGP_CASTEiJ_T0011986.1 MGP_CASTEiJ_G0010149.1 mouse_genomes_project 1 170655449 170655816 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021196.1 MGP_CASTEiJ_G0015787.1 mouse_genomes_project 1 132052653 132078296 - MGP_CASTEiJ_P0021196 protein_coding protein_coding MGP_CASTEiJ_T0021197.1 MGP_CASTEiJ_G0015787.1 mouse_genomes_project 1 132052660 132055712 - protein_coding retained_intron MGP_CASTEiJ_T0021198.1 MGP_CASTEiJ_G0015787.1 mouse_genomes_project 1 132053749 132092891 - MGP_CASTEiJ_P0021198 protein_coding protein_coding MGP_CASTEiJ_T0021199.1 MGP_CASTEiJ_G0015787.1 mouse_genomes_project 1 132054486 132078297 - MGP_CASTEiJ_P0021199 protein_coding protein_coding MGP_CASTEiJ_T0021200.1 MGP_CASTEiJ_G0015787.1 mouse_genomes_project 1 132054486 132078297 - MGP_CASTEiJ_P0021200 protein_coding protein_coding MGP_CASTEiJ_T0021201.1 MGP_CASTEiJ_G0015787.1 mouse_genomes_project 1 132061244 132078296 - MGP_CASTEiJ_P0021201 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021202.1 MGP_CASTEiJ_G0015787.1 mouse_genomes_project 1 132061244 132078296 - MGP_CASTEiJ_P0021202 protein_coding protein_coding MGP_CASTEiJ_T0021203.1 MGP_CASTEiJ_G0015787.1 mouse_genomes_project 1 132061244 132078296 - MGP_CASTEiJ_P0021203 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021204.1 MGP_CASTEiJ_G0015787.1 mouse_genomes_project 1 132061432 132079536 - MGP_CASTEiJ_P0021204 protein_coding protein_coding MGP_CASTEiJ_T0021205.1 MGP_CASTEiJ_G0015787.1 mouse_genomes_project 1 132071250 132080960 - MGP_CASTEiJ_P0021205 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0005832.1 MGP_CASTEiJ_G0004900.1 mouse_genomes_project 1 174974639 174991639 - Gm26641 lincRNA lincRNA MGP_CASTEiJ_T0020812.1 MGP_CASTEiJ_G0015708.1 mouse_genomes_project 1 98185707 98196889 - Ppip5k2 protein_coding retained_intron MGP_CASTEiJ_T0020813.1 MGP_CASTEiJ_G0015708.1 mouse_genomes_project 1 98185707 98252409 - MGP_CASTEiJ_P0020813 Ppip5k2 protein_coding protein_coding MGP_CASTEiJ_T0020814.1 MGP_CASTEiJ_G0015708.1 mouse_genomes_project 1 98185707 98252409 - MGP_CASTEiJ_P0020814 Ppip5k2 protein_coding protein_coding MGP_CASTEiJ_T0020815.1 MGP_CASTEiJ_G0015708.1 mouse_genomes_project 1 98187320 98242843 - MGP_CASTEiJ_P0020815 Ppip5k2 protein_coding protein_coding MGP_CASTEiJ_T0020816.1 MGP_CASTEiJ_G0015708.1 mouse_genomes_project 1 98193174 98198261 - MGP_CASTEiJ_P0020816 Ppip5k2 protein_coding protein_coding MGP_CASTEiJ_T0020817.1 MGP_CASTEiJ_G0015708.1 mouse_genomes_project 1 98200499 98203025 - Ppip5k2 protein_coding retained_intron MGP_CASTEiJ_T0020818.1 MGP_CASTEiJ_G0015708.1 mouse_genomes_project 1 98222632 98227396 - Ppip5k2 protein_coding retained_intron MGP_CASTEiJ_T0009257.1 MGP_CASTEiJ_G0007445.1 mouse_genomes_project 1 73819559 73819626 - Mir1928 miRNA miRNA MGP_CASTEiJ_T0011929.1 MGP_CASTEiJ_G0010092.1 mouse_genomes_project 1 148832751 148833352 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101910.1 MGP_CASTEiJ_G0038635.1 mouse_genomes_project 1 64634679 64634952 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011587.1 MGP_CASTEiJ_G0009750.1 mouse_genomes_project 1 8574394 8575004 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011734.1 MGP_CASTEiJ_G0009897.1 mouse_genomes_project 1 59284373 59284600 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019173.1 MGP_CASTEiJ_G0015390.1 mouse_genomes_project 1 55607784 55813590 - MGP_CASTEiJ_P0019173 Satb2 protein_coding protein_coding MGP_CASTEiJ_T0019174.1 MGP_CASTEiJ_G0015390.1 mouse_genomes_project 1 55607789 55812946 - MGP_CASTEiJ_P0019174 Satb2 protein_coding protein_coding MGP_CASTEiJ_T0019175.1 MGP_CASTEiJ_G0015390.1 mouse_genomes_project 1 55607791 55809947 - MGP_CASTEiJ_P0019175 Satb2 protein_coding protein_coding MGP_CASTEiJ_T0019176.1 MGP_CASTEiJ_G0015390.1 mouse_genomes_project 1 55610312 55809929 - MGP_CASTEiJ_P0019176 Satb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0019177.1 MGP_CASTEiJ_G0015390.1 mouse_genomes_project 1 55788461 55809915 - MGP_CASTEiJ_P0019177 Satb2 protein_coding protein_coding MGP_CASTEiJ_T0019178.1 MGP_CASTEiJ_G0015390.1 mouse_genomes_project 1 55809814 55819762 - MGP_CASTEiJ_P0019178 Satb2 protein_coding protein_coding MGP_CASTEiJ_T0020032.1 MGP_CASTEiJ_G0015542.1 mouse_genomes_project 1 75110481 75115182 - MGP_CASTEiJ_P0020032 Chpf protein_coding protein_coding MGP_CASTEiJ_T0020033.1 MGP_CASTEiJ_G0015542.1 mouse_genomes_project 1 75110487 75115218 - MGP_CASTEiJ_P0020033 Chpf protein_coding protein_coding MGP_CASTEiJ_T0020034.1 MGP_CASTEiJ_G0015542.1 mouse_genomes_project 1 75110488 75114666 - Chpf protein_coding retained_intron MGP_CASTEiJ_T0020035.1 MGP_CASTEiJ_G0015542.1 mouse_genomes_project 1 75110488 75115030 - MGP_CASTEiJ_P0020035 Chpf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020036.1 MGP_CASTEiJ_G0015542.1 mouse_genomes_project 1 75113428 75115025 - MGP_CASTEiJ_P0020036 Chpf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011728.1 MGP_CASTEiJ_G0009891.1 mouse_genomes_project 1 57494986 57495338 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012018.1 MGP_CASTEiJ_G0010181.1 mouse_genomes_project 1 189158890 189159370 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005567.1 MGP_CASTEiJ_G0004686.1 mouse_genomes_project 1 42405642 42406254 + Gm29157 lincRNA lincRNA MGP_CASTEiJ_T0021318.1 MGP_CASTEiJ_G0015815.1 mouse_genomes_project 1 133538638 133566813 - MGP_CASTEiJ_P0021318 Cdk18 protein_coding protein_coding MGP_CASTEiJ_T0021319.1 MGP_CASTEiJ_G0015815.1 mouse_genomes_project 1 133540942 133543270 - Cdk18 protein_coding retained_intron MGP_CASTEiJ_T0021320.1 MGP_CASTEiJ_G0015815.1 mouse_genomes_project 1 133541120 133566734 - MGP_CASTEiJ_P0021320 Cdk18 protein_coding protein_coding MGP_CASTEiJ_T0021321.1 MGP_CASTEiJ_G0015815.1 mouse_genomes_project 1 133541187 133543047 - MGP_CASTEiJ_P0021321 Cdk18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021322.1 MGP_CASTEiJ_G0015815.1 mouse_genomes_project 1 133541290 133542612 - Cdk18 protein_coding retained_intron MGP_CASTEiJ_T0101936.1 MGP_CASTEiJ_G0038661.1 mouse_genomes_project 1 141929310 142138801 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0018500.1 MGP_CASTEiJ_G0015260.1 mouse_genomes_project 1 32484491 32493923 + MGP_CASTEiJ_P0018500 Imp4 protein_coding protein_coding MGP_CASTEiJ_T0018501.1 MGP_CASTEiJ_G0015260.1 mouse_genomes_project 1 32484538 32487204 + Imp4 protein_coding retained_intron MGP_CASTEiJ_T0018502.1 MGP_CASTEiJ_G0015260.1 mouse_genomes_project 1 32484545 32489056 + MGP_CASTEiJ_P0018502 Imp4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018503.1 MGP_CASTEiJ_G0015260.1 mouse_genomes_project 1 32484545 32488525 + MGP_CASTEiJ_P0018503 Imp4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018504.1 MGP_CASTEiJ_G0015260.1 mouse_genomes_project 1 32484577 32488696 + Imp4 protein_coding processed_transcript MGP_CASTEiJ_T0018505.1 MGP_CASTEiJ_G0015260.1 mouse_genomes_project 1 32484593 32488124 + Imp4 protein_coding processed_transcript MGP_CASTEiJ_T0018506.1 MGP_CASTEiJ_G0015260.1 mouse_genomes_project 1 32484681 32489183 + MGP_CASTEiJ_P0018506 Imp4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018507.1 MGP_CASTEiJ_G0015260.1 mouse_genomes_project 1 32492892 32493514 + Imp4 protein_coding processed_transcript MGP_CASTEiJ_T0021675.1 MGP_CASTEiJ_G0015890.1 mouse_genomes_project 1 138131423 138133955 + Ddx59 protein_coding retained_intron MGP_CASTEiJ_T0021676.1 MGP_CASTEiJ_G0015890.1 mouse_genomes_project 1 138131423 138163285 + MGP_CASTEiJ_P0021676 Ddx59 protein_coding protein_coding MGP_CASTEiJ_T0021677.1 MGP_CASTEiJ_G0015890.1 mouse_genomes_project 1 138148164 138150456 + Ddx59 protein_coding processed_transcript MGP_CASTEiJ_T0021678.1 MGP_CASTEiJ_G0015890.1 mouse_genomes_project 1 138150432 138156638 + Ddx59 protein_coding retained_intron MGP_CASTEiJ_T0099062.1 MGP_CASTEiJ_G0035975.1 mouse_genomes_project 1 314804 314914 + Gm26206 snRNA snRNA MGP_CASTEiJ_T0000631.1 MGP_CASTEiJ_G0000575.1 mouse_genomes_project 1 143655699 143658795 - TEC TEC MGP_CASTEiJ_T0005569.1 MGP_CASTEiJ_G0004688.1 mouse_genomes_project 1 45365079 45366040 - Gm28151 lincRNA lincRNA MGP_CASTEiJ_T0011668.1 MGP_CASTEiJ_G0009831.1 mouse_genomes_project 1 42564636 42565458 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000562.1 MGP_CASTEiJ_G0000508.1 mouse_genomes_project 1 124349411 124352965 - TEC TEC MGP_CASTEiJ_T0000332.1 MGP_CASTEiJ_G0000281.1 mouse_genomes_project 1 5810472 5814422 - TEC TEC MGP_CASTEiJ_T0000554.1 MGP_CASTEiJ_G0000500.1 mouse_genomes_project 1 120426092 120427017 - TEC TEC MGP_CASTEiJ_T0021344.1 MGP_CASTEiJ_G0015821.1 mouse_genomes_project 1 133857717 133911163 + MGP_CASTEiJ_P0021344 Dstyk protein_coding protein_coding MGP_CASTEiJ_T0021345.1 MGP_CASTEiJ_G0015821.1 mouse_genomes_project 1 133857766 133908300 + MGP_CASTEiJ_P0021345 Dstyk protein_coding protein_coding MGP_CASTEiJ_T0021346.1 MGP_CASTEiJ_G0015821.1 mouse_genomes_project 1 133858539 133874105 + Dstyk protein_coding processed_transcript MGP_CASTEiJ_T0021347.1 MGP_CASTEiJ_G0015821.1 mouse_genomes_project 1 133892814 133895014 + MGP_CASTEiJ_P0021347 Dstyk protein_coding protein_coding MGP_CASTEiJ_T0021348.1 MGP_CASTEiJ_G0015821.1 mouse_genomes_project 1 133897974 133901848 + Dstyk protein_coding retained_intron MGP_CASTEiJ_T0021349.1 MGP_CASTEiJ_G0015821.1 mouse_genomes_project 1 133906616 133907564 + Dstyk protein_coding retained_intron MGP_CASTEiJ_T0022957.1 MGP_CASTEiJ_G0016158.1 mouse_genomes_project 1 177652859 177660668 - protein_coding retained_intron MGP_CASTEiJ_T0022958.1 MGP_CASTEiJ_G0016158.1 mouse_genomes_project 1 177659755 177795851 - protein_coding processed_transcript MGP_CASTEiJ_T0022960.1 MGP_CASTEiJ_G0016158.1 mouse_genomes_project 1 177793993 177804682 - MGP_CASTEiJ_P0022960 protein_coding protein_coding MGP_CASTEiJ_T0000520.1 MGP_CASTEiJ_G0000466.1 mouse_genomes_project 1 86994356 86995072 + TEC TEC MGP_CASTEiJ_T0005495.1 MGP_CASTEiJ_G0004636.1 mouse_genomes_project 1 1813051 1816171 - Gm37323 lincRNA lincRNA MGP_CASTEiJ_T0011717.1 MGP_CASTEiJ_G0009880.1 mouse_genomes_project 1 53889149 53889904 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100320.1 MGP_CASTEiJ_G0037233.1 mouse_genomes_project 1 156892114 156892217 - Gm25336 snoRNA snoRNA MGP_CASTEiJ_T0020306.1 MGP_CASTEiJ_G0015595.1 mouse_genomes_project 1 86087781 86190426 + Armc9 protein_coding retained_intron MGP_CASTEiJ_T0020307.1 MGP_CASTEiJ_G0015595.1 mouse_genomes_project 1 86087785 86155025 + Armc9 protein_coding retained_intron MGP_CASTEiJ_T0020308.1 MGP_CASTEiJ_G0015595.1 mouse_genomes_project 1 86087785 86203934 + Armc9 protein_coding retained_intron MGP_CASTEiJ_T0020309.1 MGP_CASTEiJ_G0015595.1 mouse_genomes_project 1 86087799 86119138 + Armc9 protein_coding processed_transcript MGP_CASTEiJ_T0020310.1 MGP_CASTEiJ_G0015595.1 mouse_genomes_project 1 86087799 86223793 + MGP_CASTEiJ_P0020310 Armc9 protein_coding protein_coding MGP_CASTEiJ_T0020311.1 MGP_CASTEiJ_G0015595.1 mouse_genomes_project 1 86087800 86099379 + MGP_CASTEiJ_P0020311 Armc9 protein_coding protein_coding MGP_CASTEiJ_T0020312.1 MGP_CASTEiJ_G0015595.1 mouse_genomes_project 1 86087811 86225285 + MGP_CASTEiJ_P0020312 Armc9 protein_coding protein_coding MGP_CASTEiJ_T0020313.1 MGP_CASTEiJ_G0015595.1 mouse_genomes_project 1 86087816 86196595 + MGP_CASTEiJ_P0020313 Armc9 protein_coding protein_coding MGP_CASTEiJ_T0020314.1 MGP_CASTEiJ_G0015595.1 mouse_genomes_project 1 86087820 86115037 + Armc9 protein_coding retained_intron MGP_CASTEiJ_T0020315.1 MGP_CASTEiJ_G0015595.1 mouse_genomes_project 1 86137128 86196498 + MGP_CASTEiJ_P0020315 Armc9 protein_coding protein_coding MGP_CASTEiJ_T0020316.1 MGP_CASTEiJ_G0015595.1 mouse_genomes_project 1 86143248 86196595 + MGP_CASTEiJ_P0020316 Armc9 protein_coding protein_coding MGP_CASTEiJ_T0020317.1 MGP_CASTEiJ_G0015595.1 mouse_genomes_project 1 86188665 86216332 + MGP_CASTEiJ_P0020317 Armc9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018413.1 MGP_CASTEiJ_G0015243.1 mouse_genomes_project 1 24439886 24449731 - MGP_CASTEiJ_P0018413 4931408C20Rik protein_coding protein_coding MGP_CASTEiJ_T0020161.1 MGP_CASTEiJ_G0015569.1 mouse_genomes_project 1 82251759 82383839 + MGP_CASTEiJ_P0020161 Rhbdd1 protein_coding protein_coding MGP_CASTEiJ_T0020162.1 MGP_CASTEiJ_G0015569.1 mouse_genomes_project 1 82251949 82255034 + Rhbdd1 protein_coding retained_intron MGP_CASTEiJ_T0020163.1 MGP_CASTEiJ_G0015569.1 mouse_genomes_project 1 82274409 82383839 + MGP_CASTEiJ_P0020163 Rhbdd1 protein_coding protein_coding MGP_CASTEiJ_T0020660.1 MGP_CASTEiJ_G0015678.1 mouse_genomes_project 1 93394652 93404635 + MGP_CASTEiJ_P0020660 Rnpepl1 protein_coding protein_coding MGP_CASTEiJ_T0020661.1 MGP_CASTEiJ_G0015678.1 mouse_genomes_project 1 93394694 93404366 + Rnpepl1 protein_coding retained_intron MGP_CASTEiJ_T0020662.1 MGP_CASTEiJ_G0015678.1 mouse_genomes_project 1 93394722 93397303 + Rnpepl1 protein_coding retained_intron MGP_CASTEiJ_T0020663.1 MGP_CASTEiJ_G0015678.1 mouse_genomes_project 1 93394834 93412091 + MGP_CASTEiJ_P0020663 Rnpepl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020664.1 MGP_CASTEiJ_G0015678.1 mouse_genomes_project 1 93395017 93400531 + MGP_CASTEiJ_P0020664 Rnpepl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020665.1 MGP_CASTEiJ_G0015678.1 mouse_genomes_project 1 93395105 93399727 + MGP_CASTEiJ_P0020665 Rnpepl1 protein_coding protein_coding MGP_CASTEiJ_T0020666.1 MGP_CASTEiJ_G0015678.1 mouse_genomes_project 1 93399637 93404366 + Rnpepl1 protein_coding retained_intron MGP_CASTEiJ_T0020667.1 MGP_CASTEiJ_G0015678.1 mouse_genomes_project 1 93400584 93404366 + MGP_CASTEiJ_P0020667 Rnpepl1 protein_coding protein_coding MGP_CASTEiJ_T0020668.1 MGP_CASTEiJ_G0015678.1 mouse_genomes_project 1 93400598 93403010 + Rnpepl1 protein_coding retained_intron MGP_CASTEiJ_T0020669.1 MGP_CASTEiJ_G0015678.1 mouse_genomes_project 1 93400805 93401867 + Rnpepl1 protein_coding retained_intron MGP_CASTEiJ_T0020670.1 MGP_CASTEiJ_G0015678.1 mouse_genomes_project 1 93400940 93402859 + MGP_CASTEiJ_P0020670 Rnpepl1 protein_coding protein_coding MGP_CASTEiJ_T0020671.1 MGP_CASTEiJ_G0015678.1 mouse_genomes_project 1 93401209 93403011 + Rnpepl1 protein_coding retained_intron MGP_CASTEiJ_T0020672.1 MGP_CASTEiJ_G0015678.1 mouse_genomes_project 1 93403407 93408173 + MGP_CASTEiJ_P0020672 Rnpepl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011876.1 MGP_CASTEiJ_G0010039.1 mouse_genomes_project 1 120286644 120287037 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011650.1 MGP_CASTEiJ_G0009813.1 mouse_genomes_project 1 32697594 32698981 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002734.1 MGP_CASTEiJ_G0002596.1 mouse_genomes_project 1 74570810 74576074 + Gm15841 antisense antisense MGP_CASTEiJ_T0000749.1 MGP_CASTEiJ_G0000691.1 mouse_genomes_project 1 191957124 191961613 + TEC TEC MGP_CASTEiJ_T0022954.1 MGP_CASTEiJ_G0016155.1 mouse_genomes_project 1 177414023 177431692 + MGP_CASTEiJ_P0022954 protein_coding protein_coding MGP_CASTEiJ_T0020502.1 MGP_CASTEiJ_G0015642.1 mouse_genomes_project 1 90267757 90270973 - MGP_CASTEiJ_P0020502 Gbx2 protein_coding protein_coding MGP_CASTEiJ_T0020503.1 MGP_CASTEiJ_G0015642.1 mouse_genomes_project 1 90267767 90268983 - Gbx2 protein_coding retained_intron MGP_CASTEiJ_T0018009.1 MGP_CASTEiJ_G0015163.1 mouse_genomes_project 1 2058637 2102988 + MGP_CASTEiJ_P0018009 Lypla1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018010.1 MGP_CASTEiJ_G0015163.1 mouse_genomes_project 1 2058672 2101314 + MGP_CASTEiJ_P0018010 Lypla1 protein_coding protein_coding MGP_CASTEiJ_T0018011.1 MGP_CASTEiJ_G0015163.1 mouse_genomes_project 1 2058679 2095791 + MGP_CASTEiJ_P0018011 Lypla1 protein_coding protein_coding MGP_CASTEiJ_T0018013.1 MGP_CASTEiJ_G0015163.1 mouse_genomes_project 1 2058745 2099757 + MGP_CASTEiJ_P0018013 Lypla1 protein_coding protein_coding MGP_CASTEiJ_T0018014.1 MGP_CASTEiJ_G0015163.1 mouse_genomes_project 1 2058747 2095474 + MGP_CASTEiJ_P0018014 Lypla1 protein_coding protein_coding MGP_CASTEiJ_T0018015.1 MGP_CASTEiJ_G0015163.1 mouse_genomes_project 1 2058760 2099935 + MGP_CASTEiJ_P0018015 Lypla1 protein_coding protein_coding MGP_CASTEiJ_T0018016.1 MGP_CASTEiJ_G0015163.1 mouse_genomes_project 1 2058790 2101315 + MGP_CASTEiJ_P0018016 Lypla1 protein_coding protein_coding MGP_CASTEiJ_T0018017.1 MGP_CASTEiJ_G0015163.1 mouse_genomes_project 1 2091325 2097321 + Lypla1 protein_coding retained_intron MGP_CASTEiJ_T0000494.1 MGP_CASTEiJ_G0000440.1 mouse_genomes_project 1 80084428 80086128 - TEC TEC MGP_CASTEiJ_T0000624.1 MGP_CASTEiJ_G0000568.1 mouse_genomes_project 1 140843562 140846004 - TEC TEC MGP_CASTEiJ_T0020643.1 MGP_CASTEiJ_G0015673.1 mouse_genomes_project 1 93101216 93104045 - protein_coding retained_intron MGP_CASTEiJ_T0020644.1 MGP_CASTEiJ_G0015673.1 mouse_genomes_project 1 93101216 93106045 - MGP_CASTEiJ_P0020644 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020645.1 MGP_CASTEiJ_G0015673.1 mouse_genomes_project 1 93101216 93106107 - MGP_CASTEiJ_P0020645 protein_coding protein_coding MGP_CASTEiJ_T0020646.1 MGP_CASTEiJ_G0015673.1 mouse_genomes_project 1 93101216 93104688 - MGP_CASTEiJ_P0020646 protein_coding protein_coding MGP_CASTEiJ_T0020647.1 MGP_CASTEiJ_G0015673.1 mouse_genomes_project 1 93103439 93106107 - protein_coding retained_intron MGP_CASTEiJ_T0022534.1 MGP_CASTEiJ_G0016049.1 mouse_genomes_project 1 169568752 169634650 + MGP_CASTEiJ_P0022534 Ildr2 protein_coding protein_coding MGP_CASTEiJ_T0022535.1 MGP_CASTEiJ_G0016049.1 mouse_genomes_project 1 169568806 169629071 + MGP_CASTEiJ_P0022535 Ildr2 protein_coding protein_coding MGP_CASTEiJ_T0022536.1 MGP_CASTEiJ_G0016049.1 mouse_genomes_project 1 169568806 169629071 + MGP_CASTEiJ_P0022536 Ildr2 protein_coding protein_coding MGP_CASTEiJ_T0022537.1 MGP_CASTEiJ_G0016049.1 mouse_genomes_project 1 169568806 169629071 + MGP_CASTEiJ_P0022537 Ildr2 protein_coding protein_coding MGP_CASTEiJ_T0022538.1 MGP_CASTEiJ_G0016049.1 mouse_genomes_project 1 169568806 169629071 + MGP_CASTEiJ_P0022538 Ildr2 protein_coding protein_coding MGP_CASTEiJ_T0022539.1 MGP_CASTEiJ_G0016049.1 mouse_genomes_project 1 169568806 169629071 + MGP_CASTEiJ_P0022539 Ildr2 protein_coding protein_coding MGP_CASTEiJ_T0022540.1 MGP_CASTEiJ_G0016049.1 mouse_genomes_project 1 169568806 169629071 + MGP_CASTEiJ_P0022540 Ildr2 protein_coding protein_coding MGP_CASTEiJ_T0020515.1 MGP_CASTEiJ_G0015645.1 mouse_genomes_project 1 90553734 90565412 + MGP_CASTEiJ_P0020515 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020516.1 MGP_CASTEiJ_G0015645.1 mouse_genomes_project 1 90553742 90563545 + MGP_CASTEiJ_P0020516 protein_coding protein_coding MGP_CASTEiJ_T0022952.1 MGP_CASTEiJ_G0016154.1 mouse_genomes_project 1 177284915 177492106 + MGP_CASTEiJ_P0022952 Pydc4 protein_coding protein_coding MGP_CASTEiJ_T0022953.1 MGP_CASTEiJ_G0016154.1 mouse_genomes_project 1 177285089 177491805 + MGP_CASTEiJ_P0022953 Pydc4 protein_coding protein_coding MGP_CASTEiJ_T0019540.1 MGP_CASTEiJ_G0015455.1 mouse_genomes_project 1 64261440 64262247 - protein_coding retained_intron MGP_CASTEiJ_T0022049.1 MGP_CASTEiJ_G0015961.1 mouse_genomes_project 1 158575333 158628504 - MGP_CASTEiJ_P0022049 Lhx4 protein_coding protein_coding MGP_CASTEiJ_T0022050.1 MGP_CASTEiJ_G0015961.1 mouse_genomes_project 1 158586101 158638216 - MGP_CASTEiJ_P0022050 Lhx4 protein_coding protein_coding MGP_CASTEiJ_T0005793.1 MGP_CASTEiJ_G0004869.1 mouse_genomes_project 1 161994129 162006857 - 1600012P17Rik lincRNA lincRNA MGP_CASTEiJ_T0005794.1 MGP_CASTEiJ_G0004869.1 mouse_genomes_project 1 161996036 162006465 - 1600012P17Rik lincRNA lincRNA MGP_CASTEiJ_T0012013.1 MGP_CASTEiJ_G0010176.1 mouse_genomes_project 1 186583815 186584578 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021215.1 MGP_CASTEiJ_G0015792.1 mouse_genomes_project 1 132239421 132255364 + MGP_CASTEiJ_P0021215 Fcmr protein_coding protein_coding MGP_CASTEiJ_T0021216.1 MGP_CASTEiJ_G0015792.1 mouse_genomes_project 1 132239532 132249749 + Fcmr protein_coding processed_transcript MGP_CASTEiJ_T0021217.1 MGP_CASTEiJ_G0015792.1 mouse_genomes_project 1 132252795 132255352 + Fcmr protein_coding processed_transcript MGP_CASTEiJ_T0021218.1 MGP_CASTEiJ_G0015792.1 mouse_genomes_project 1 132252968 132255363 + Fcmr protein_coding processed_transcript MGP_CASTEiJ_T0011805.1 MGP_CASTEiJ_G0009968.1 mouse_genomes_project 1 87125772 87127882 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005571.1 MGP_CASTEiJ_G0004690.1 mouse_genomes_project 1 47764096 47851415 + C230029F24Rik lincRNA lincRNA MGP_CASTEiJ_T0002850.1 MGP_CASTEiJ_G0002687.1 mouse_genomes_project 1 175544512 175555662 - Gm37065 antisense antisense MGP_CASTEiJ_T0011632.1 MGP_CASTEiJ_G0009795.1 mouse_genomes_project 1 27847156 27847778 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002832.1 MGP_CASTEiJ_G0002673.1 mouse_genomes_project 1 166239358 166325449 + Gm37273 antisense antisense MGP_CASTEiJ_T0018861.1 MGP_CASTEiJ_G0015330.1 mouse_genomes_project 1 41707068 41724409 + MGP_CASTEiJ_P0018861 AI597479 protein_coding protein_coding MGP_CASTEiJ_T0005819.1 MGP_CASTEiJ_G0004888.1 mouse_genomes_project 1 169085690 169086972 - Gm36972 lincRNA lincRNA MGP_CASTEiJ_T0005902.1 MGP_CASTEiJ_G0004954.1 mouse_genomes_project 1 200087629 200087980 - Gm37027 lincRNA lincRNA MGP_CASTEiJ_T0011976.1 MGP_CASTEiJ_G0010139.1 mouse_genomes_project 1 168463176 168463300 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021136.1 MGP_CASTEiJ_G0015775.1 mouse_genomes_project 1 129152586 129310251 - MGP_CASTEiJ_P0021136 Zranb3 protein_coding protein_coding MGP_CASTEiJ_T0021137.1 MGP_CASTEiJ_G0015775.1 mouse_genomes_project 1 129153073 129310790 - MGP_CASTEiJ_P0021137 Zranb3 protein_coding protein_coding MGP_CASTEiJ_T0021138.1 MGP_CASTEiJ_G0015775.1 mouse_genomes_project 1 129166298 129176118 - Zranb3 protein_coding processed_transcript MGP_CASTEiJ_T0021139.1 MGP_CASTEiJ_G0015775.1 mouse_genomes_project 1 129190240 129310836 - Zranb3 protein_coding processed_transcript MGP_CASTEiJ_T0021140.1 MGP_CASTEiJ_G0015775.1 mouse_genomes_project 1 129199646 129310252 - Zranb3 protein_coding retained_intron MGP_CASTEiJ_T0021141.1 MGP_CASTEiJ_G0015775.1 mouse_genomes_project 1 129200034 129222085 - Zranb3 protein_coding processed_transcript MGP_CASTEiJ_T0021142.1 MGP_CASTEiJ_G0015775.1 mouse_genomes_project 1 129264344 129310243 - Zranb3 protein_coding retained_intron MGP_CASTEiJ_T0011633.1 MGP_CASTEiJ_G0009796.1 mouse_genomes_project 1 28707770 28708098 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005772.1 MGP_CASTEiJ_G0004853.1 mouse_genomes_project 1 151942622 151984265 - Gm29398 lincRNA lincRNA MGP_CASTEiJ_T0005773.1 MGP_CASTEiJ_G0004853.1 mouse_genomes_project 1 151953439 151984264 - Gm29398 lincRNA lincRNA MGP_CASTEiJ_T0018304.1 MGP_CASTEiJ_G0015214.1 mouse_genomes_project 1 15064325 15094380 + MGP_CASTEiJ_P0018304 Pi15 protein_coding protein_coding MGP_CASTEiJ_T0009292.1 MGP_CASTEiJ_G0007480.1 mouse_genomes_project 1 152605821 152605945 - miRNA miRNA MGP_CASTEiJ_T0010911.1 MGP_CASTEiJ_G0009099.1 mouse_genomes_project 1 27189920 27190032 - Gm25586 misc_RNA misc_RNA MGP_CASTEiJ_T0098789.1 MGP_CASTEiJ_G0035720.1 mouse_genomes_project 1 73919931 73922242 + Gm29358 sense_intronic sense_intronic MGP_CASTEiJ_T0098790.1 MGP_CASTEiJ_G0035720.1 mouse_genomes_project 1 73919969 73923200 + Gm29358 sense_intronic sense_intronic MGP_CASTEiJ_T0022012.1 MGP_CASTEiJ_G0015956.1 mouse_genomes_project 1 157974414 157994905 - MGP_CASTEiJ_P0022012 Mr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022013.1 MGP_CASTEiJ_G0015956.1 mouse_genomes_project 1 157975014 157981168 - Mr1 protein_coding retained_intron MGP_CASTEiJ_T0022014.1 MGP_CASTEiJ_G0015956.1 mouse_genomes_project 1 157975018 157994884 - MGP_CASTEiJ_P0022014 Mr1 protein_coding protein_coding MGP_CASTEiJ_T0022015.1 MGP_CASTEiJ_G0015956.1 mouse_genomes_project 1 157975974 157994905 - MGP_CASTEiJ_P0022015 Mr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022016.1 MGP_CASTEiJ_G0015956.1 mouse_genomes_project 1 157982936 157994915 - Mr1 protein_coding retained_intron MGP_CASTEiJ_T0022554.1 MGP_CASTEiJ_G0016054.1 mouse_genomes_project 1 169972949 169993120 - MGP_CASTEiJ_P0022554 Fmo9 protein_coding protein_coding MGP_CASTEiJ_T0022555.1 MGP_CASTEiJ_G0016054.1 mouse_genomes_project 1 169973281 169993110 - MGP_CASTEiJ_P0022555 Fmo9 protein_coding protein_coding MGP_CASTEiJ_T0018280.1 MGP_CASTEiJ_G0015209.1 mouse_genomes_project 1 14109635 14124578 - MGP_CASTEiJ_P0018280 Tceb1 protein_coding protein_coding MGP_CASTEiJ_T0018281.1 MGP_CASTEiJ_G0015209.1 mouse_genomes_project 1 14110668 14124737 - MGP_CASTEiJ_P0018281 Tceb1 protein_coding protein_coding MGP_CASTEiJ_T0018282.1 MGP_CASTEiJ_G0015209.1 mouse_genomes_project 1 14111043 14124713 - MGP_CASTEiJ_P0018282 Tceb1 protein_coding protein_coding MGP_CASTEiJ_T0018283.1 MGP_CASTEiJ_G0015209.1 mouse_genomes_project 1 14111070 14124733 - MGP_CASTEiJ_P0018283 Tceb1 protein_coding protein_coding MGP_CASTEiJ_T0018284.1 MGP_CASTEiJ_G0015209.1 mouse_genomes_project 1 14111092 14124609 - MGP_CASTEiJ_P0018284 Tceb1 protein_coding protein_coding MGP_CASTEiJ_T0018285.1 MGP_CASTEiJ_G0015209.1 mouse_genomes_project 1 14111244 14115752 - MGP_CASTEiJ_P0018285 Tceb1 protein_coding protein_coding MGP_CASTEiJ_T0018286.1 MGP_CASTEiJ_G0015209.1 mouse_genomes_project 1 14111374 14124319 - MGP_CASTEiJ_P0018286 Tceb1 protein_coding protein_coding MGP_CASTEiJ_T0018287.1 MGP_CASTEiJ_G0015209.1 mouse_genomes_project 1 14114517 14124595 - Tceb1 protein_coding retained_intron MGP_CASTEiJ_T0018288.1 MGP_CASTEiJ_G0015209.1 mouse_genomes_project 1 14114633 14124610 - Tceb1 protein_coding retained_intron MGP_CASTEiJ_T0018289.1 MGP_CASTEiJ_G0015209.1 mouse_genomes_project 1 14115395 14124572 - Tceb1 protein_coding retained_intron MGP_CASTEiJ_T0018290.1 MGP_CASTEiJ_G0015209.1 mouse_genomes_project 1 14115450 14124737 - Tceb1 protein_coding retained_intron MGP_CASTEiJ_T0005871.1 MGP_CASTEiJ_G0004927.1 mouse_genomes_project 1 189287314 189289909 + Gm34342 lincRNA lincRNA MGP_CASTEiJ_T0002766.1 MGP_CASTEiJ_G0002623.1 mouse_genomes_project 1 107143591 107160642 + D630008O14Rik antisense antisense MGP_CASTEiJ_T0002767.1 MGP_CASTEiJ_G0002623.1 mouse_genomes_project 1 107143591 107178111 + D630008O14Rik antisense antisense MGP_CASTEiJ_T0000344.1 MGP_CASTEiJ_G0000293.1 mouse_genomes_project 1 10452537 10453088 - TEC TEC MGP_CASTEiJ_T0011550.1 MGP_CASTEiJ_G0009713.1 mouse_genomes_project 1 1842877 1843813 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016268.1 MGP_CASTEiJ_G0014414.1 mouse_genomes_project 1 62329908 62335913 + Platr12 processed_transcript antisense MGP_CASTEiJ_T0016269.1 MGP_CASTEiJ_G0014414.1 mouse_genomes_project 1 62330303 62336266 + Platr12 processed_transcript lincRNA MGP_CASTEiJ_T0022297.1 MGP_CASTEiJ_G0016001.1 mouse_genomes_project 1 165034716 165098331 - MGP_CASTEiJ_P0022297 Suco protein_coding protein_coding MGP_CASTEiJ_T0022298.1 MGP_CASTEiJ_G0016001.1 mouse_genomes_project 1 165038978 165041301 - Suco protein_coding retained_intron MGP_CASTEiJ_T0022299.1 MGP_CASTEiJ_G0016001.1 mouse_genomes_project 1 165047338 165048493 - Suco protein_coding retained_intron MGP_CASTEiJ_T0022300.1 MGP_CASTEiJ_G0016001.1 mouse_genomes_project 1 165054346 165064001 - Suco protein_coding processed_transcript MGP_CASTEiJ_T0022301.1 MGP_CASTEiJ_G0016001.1 mouse_genomes_project 1 165057990 165063561 - Suco protein_coding retained_intron MGP_CASTEiJ_T0022302.1 MGP_CASTEiJ_G0016001.1 mouse_genomes_project 1 165064055 165074600 - MGP_CASTEiJ_P0022302 Suco protein_coding protein_coding MGP_CASTEiJ_T0022303.1 MGP_CASTEiJ_G0016001.1 mouse_genomes_project 1 165072788 165078284 - MGP_CASTEiJ_P0022303 Suco protein_coding protein_coding MGP_CASTEiJ_T0005657.1 MGP_CASTEiJ_G0004755.1 mouse_genomes_project 1 83023765 83026235 - lincRNA lincRNA MGP_CASTEiJ_T0002870.1 MGP_CASTEiJ_G0002704.1 mouse_genomes_project 1 189833495 189838888 - Gm34882 antisense antisense MGP_CASTEiJ_T0005521.1 MGP_CASTEiJ_G0004657.1 mouse_genomes_project 1 28638407 28639810 - Gm9898 lincRNA lincRNA MGP_CASTEiJ_T0022108.1 MGP_CASTEiJ_G0015971.1 mouse_genomes_project 1 159437837 159509648 + MGP_CASTEiJ_P0022108 Abl2 protein_coding protein_coding MGP_CASTEiJ_T0022109.1 MGP_CASTEiJ_G0015971.1 mouse_genomes_project 1 159438038 159535108 + MGP_CASTEiJ_P0022109 Abl2 protein_coding protein_coding MGP_CASTEiJ_T0022110.1 MGP_CASTEiJ_G0015971.1 mouse_genomes_project 1 159438100 159528278 + MGP_CASTEiJ_P0022110 Abl2 protein_coding protein_coding MGP_CASTEiJ_T0022111.1 MGP_CASTEiJ_G0015971.1 mouse_genomes_project 1 159499119 159514209 + MGP_CASTEiJ_P0022111 Abl2 protein_coding protein_coding MGP_CASTEiJ_T0099036.1 MGP_CASTEiJ_G0035953.1 mouse_genomes_project 1 105935678 105961655 - sense_overlapping sense_overlapping MGP_CASTEiJ_T0005535.1 MGP_CASTEiJ_G0004669.1 mouse_genomes_project 1 34145631 34146452 + 4930535G08Rik lincRNA lincRNA MGP_CASTEiJ_T0020167.1 MGP_CASTEiJ_G0015571.1 mouse_genomes_project 1 82522533 82579278 + Col4a3 protein_coding retained_intron MGP_CASTEiJ_T0020168.1 MGP_CASTEiJ_G0015571.1 mouse_genomes_project 1 82522588 82674934 + MGP_CASTEiJ_P0020168 Col4a3 protein_coding protein_coding MGP_CASTEiJ_T0020169.1 MGP_CASTEiJ_G0015571.1 mouse_genomes_project 1 82668225 82671861 + MGP_CASTEiJ_P0020169 Col4a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020170.1 MGP_CASTEiJ_G0015571.1 mouse_genomes_project 1 82668225 82671938 + MGP_CASTEiJ_P0020170 Col4a3 protein_coding protein_coding MGP_CASTEiJ_T0021252.1 MGP_CASTEiJ_G0015802.1 mouse_genomes_project 1 132683727 132922938 - MGP_CASTEiJ_P0021252 Srgap2 protein_coding protein_coding MGP_CASTEiJ_T0021253.1 MGP_CASTEiJ_G0015802.1 mouse_genomes_project 1 132687922 132698993 - MGP_CASTEiJ_P0021253 Srgap2 protein_coding protein_coding MGP_CASTEiJ_T0021254.1 MGP_CASTEiJ_G0015802.1 mouse_genomes_project 1 132693568 132724204 - Srgap2 protein_coding processed_transcript MGP_CASTEiJ_T0021255.1 MGP_CASTEiJ_G0015802.1 mouse_genomes_project 1 132693799 132922938 - MGP_CASTEiJ_P0021255 Srgap2 protein_coding protein_coding MGP_CASTEiJ_T0021256.1 MGP_CASTEiJ_G0015802.1 mouse_genomes_project 1 132693800 132702769 - Srgap2 protein_coding processed_transcript MGP_CASTEiJ_T0021257.1 MGP_CASTEiJ_G0015802.1 mouse_genomes_project 1 132693802 132735703 - MGP_CASTEiJ_P0021257 Srgap2 protein_coding protein_coding MGP_CASTEiJ_T0021258.1 MGP_CASTEiJ_G0015802.1 mouse_genomes_project 1 132694338 132694963 - Srgap2 protein_coding processed_transcript MGP_CASTEiJ_T0021259.1 MGP_CASTEiJ_G0015802.1 mouse_genomes_project 1 132694898 132923637 - MGP_CASTEiJ_P0021259 Srgap2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021260.1 MGP_CASTEiJ_G0015802.1 mouse_genomes_project 1 132695222 132755097 - MGP_CASTEiJ_P0021260 Srgap2 protein_coding protein_coding MGP_CASTEiJ_T0021261.1 MGP_CASTEiJ_G0015802.1 mouse_genomes_project 1 132711107 132723397 - Srgap2 protein_coding retained_intron MGP_CASTEiJ_T0021262.1 MGP_CASTEiJ_G0015802.1 mouse_genomes_project 1 132753054 132922943 - Srgap2 protein_coding retained_intron MGP_CASTEiJ_T0021263.1 MGP_CASTEiJ_G0015802.1 mouse_genomes_project 1 132802920 132909573 - MGP_CASTEiJ_P0021263 Srgap2 protein_coding protein_coding MGP_CASTEiJ_T0021264.1 MGP_CASTEiJ_G0015802.1 mouse_genomes_project 1 132828842 132900130 - MGP_CASTEiJ_P0021264 Srgap2 protein_coding protein_coding MGP_CASTEiJ_T0000682.1 MGP_CASTEiJ_G0000626.1 mouse_genomes_project 1 164064629 164067494 + TEC TEC MGP_CASTEiJ_T0099069.1 MGP_CASTEiJ_G0035982.1 mouse_genomes_project 1 7891696 7891803 - Gm25253 snRNA snRNA MGP_CASTEiJ_T0011678.1 MGP_CASTEiJ_G0009841.1 mouse_genomes_project 1 44133438 44134395 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002645.1 MGP_CASTEiJ_G0002535.1 mouse_genomes_project 1 657469 705655 + Gm1992 antisense antisense MGP_CASTEiJ_T0005705.1 MGP_CASTEiJ_G0004799.1 mouse_genomes_project 1 108633711 108660094 + D830032E09Rik lincRNA lincRNA MGP_CASTEiJ_T0005706.1 MGP_CASTEiJ_G0004799.1 mouse_genomes_project 1 108633737 108660107 + D830032E09Rik lincRNA lincRNA MGP_CASTEiJ_T0005707.1 MGP_CASTEiJ_G0004799.1 mouse_genomes_project 1 108645668 108742864 + D830032E09Rik lincRNA lincRNA MGP_CASTEiJ_T0023526.1 MGP_CASTEiJ_G0016288.1 mouse_genomes_project 1 196347510 196390657 - MGP_CASTEiJ_P0023526 Ppp2r5a protein_coding protein_coding MGP_CASTEiJ_T0023527.1 MGP_CASTEiJ_G0016288.1 mouse_genomes_project 1 196350360 196352022 - Ppp2r5a protein_coding retained_intron MGP_CASTEiJ_T0023528.1 MGP_CASTEiJ_G0016288.1 mouse_genomes_project 1 196351890 196381980 - Ppp2r5a protein_coding processed_transcript MGP_CASTEiJ_T0023529.1 MGP_CASTEiJ_G0016288.1 mouse_genomes_project 1 196352516 196364354 - MGP_CASTEiJ_P0023529 Ppp2r5a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023530.1 MGP_CASTEiJ_G0016288.1 mouse_genomes_project 1 196357305 196364343 - Ppp2r5a protein_coding retained_intron MGP_CASTEiJ_T0023531.1 MGP_CASTEiJ_G0016288.1 mouse_genomes_project 1 196367350 196392948 - Ppp2r5a protein_coding processed_transcript MGP_CASTEiJ_T0023532.1 MGP_CASTEiJ_G0016288.1 mouse_genomes_project 1 196392274 196396715 - Ppp2r5a protein_coding retained_intron MGP_CASTEiJ_T0005900.1 MGP_CASTEiJ_G0004952.1 mouse_genomes_project 1 199246386 199257003 - 4930503O07Rik lincRNA lincRNA MGP_CASTEiJ_T0012016.1 MGP_CASTEiJ_G0010179.1 mouse_genomes_project 1 187868535 187868928 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011702.1 MGP_CASTEiJ_G0009865.1 mouse_genomes_project 1 48810974 48811602 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020798.1 MGP_CASTEiJ_G0015702.1 mouse_genomes_project 1 94588609 94603647 - MGP_CASTEiJ_P0020798 Pdcd1 protein_coding protein_coding MGP_CASTEiJ_T0101959.1 MGP_CASTEiJ_G0038684.1 mouse_genomes_project 1 185439849 185448028 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002675.1 MGP_CASTEiJ_G0002554.1 mouse_genomes_project 1 34238709 34239772 - Gm37335 antisense antisense MGP_CASTEiJ_T0098779.1 MGP_CASTEiJ_G0035710.1 mouse_genomes_project 1 851895 866443 - Gm19938 sense_intronic sense_intronic MGP_CASTEiJ_T0018209.1 MGP_CASTEiJ_G0015193.1 mouse_genomes_project 1 10546671 10787405 - MGP_CASTEiJ_P0018209 Ncoa2 protein_coding protein_coding MGP_CASTEiJ_T0018210.1 MGP_CASTEiJ_G0015193.1 mouse_genomes_project 1 10546725 10789049 - MGP_CASTEiJ_P0018210 Ncoa2 protein_coding protein_coding MGP_CASTEiJ_T0018211.1 MGP_CASTEiJ_G0015193.1 mouse_genomes_project 1 10550056 10789049 - MGP_CASTEiJ_P0018211 Ncoa2 protein_coding protein_coding MGP_CASTEiJ_T0018212.1 MGP_CASTEiJ_G0015193.1 mouse_genomes_project 1 10552851 10554074 - Ncoa2 protein_coding processed_transcript MGP_CASTEiJ_T0018213.1 MGP_CASTEiJ_G0015193.1 mouse_genomes_project 1 10554042 10555956 - Ncoa2 protein_coding retained_intron MGP_CASTEiJ_T0018214.1 MGP_CASTEiJ_G0015193.1 mouse_genomes_project 1 10555877 10558454 - Ncoa2 protein_coding retained_intron MGP_CASTEiJ_T0018215.1 MGP_CASTEiJ_G0015193.1 mouse_genomes_project 1 10577005 10789049 - Ncoa2 protein_coding retained_intron MGP_CASTEiJ_T0018216.1 MGP_CASTEiJ_G0015193.1 mouse_genomes_project 1 10578446 10788995 - Ncoa2 protein_coding retained_intron MGP_CASTEiJ_T0018217.1 MGP_CASTEiJ_G0015193.1 mouse_genomes_project 1 10594443 10787395 - Ncoa2 protein_coding retained_intron MGP_CASTEiJ_T0018218.1 MGP_CASTEiJ_G0015193.1 mouse_genomes_project 1 10596767 10788995 - Ncoa2 protein_coding retained_intron MGP_CASTEiJ_T0018219.1 MGP_CASTEiJ_G0015193.1 mouse_genomes_project 1 10602265 10712810 - MGP_CASTEiJ_P0018219 Ncoa2 protein_coding protein_coding MGP_CASTEiJ_T0002817.1 MGP_CASTEiJ_G0002662.1 mouse_genomes_project 1 159840428 159840787 + 4930439D14Rik antisense antisense MGP_CASTEiJ_T0022420.1 MGP_CASTEiJ_G0016027.1 mouse_genomes_project 1 167517826 167534103 + MGP_CASTEiJ_P0022420 Slc19a2 protein_coding protein_coding MGP_CASTEiJ_T0022421.1 MGP_CASTEiJ_G0016027.1 mouse_genomes_project 1 167517835 167534087 + MGP_CASTEiJ_P0022421 Slc19a2 protein_coding protein_coding MGP_CASTEiJ_T0022422.1 MGP_CASTEiJ_G0016027.1 mouse_genomes_project 1 167518033 167532235 + MGP_CASTEiJ_P0022422 Slc19a2 protein_coding protein_coding MGP_CASTEiJ_T0022423.1 MGP_CASTEiJ_G0016027.1 mouse_genomes_project 1 167531069 167532168 + Slc19a2 protein_coding retained_intron MGP_CASTEiJ_T0000560.1 MGP_CASTEiJ_G0000506.1 mouse_genomes_project 1 123469247 123470349 + TEC TEC MGP_CASTEiJ_T0005890.1 MGP_CASTEiJ_G0004944.1 mouse_genomes_project 1 196106843 196108208 + Gm38161 lincRNA lincRNA MGP_CASTEiJ_T0000556.1 MGP_CASTEiJ_G0000502.1 mouse_genomes_project 1 121735496 121738625 + TEC TEC MGP_CASTEiJ_T0020504.1 MGP_CASTEiJ_G0015643.1 mouse_genomes_project 1 90281274 90337344 - MGP_CASTEiJ_P0020504 Asb18 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020505.1 MGP_CASTEiJ_G0015643.1 mouse_genomes_project 1 90290269 90356201 - MGP_CASTEiJ_P0020505 Asb18 protein_coding protein_coding MGP_CASTEiJ_T0020506.1 MGP_CASTEiJ_G0015643.1 mouse_genomes_project 1 90293034 90356290 - MGP_CASTEiJ_P0020506 Asb18 protein_coding protein_coding MGP_CASTEiJ_T0020507.1 MGP_CASTEiJ_G0015643.1 mouse_genomes_project 1 90293121 90356201 - MGP_CASTEiJ_P0020507 Asb18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020508.1 MGP_CASTEiJ_G0015643.1 mouse_genomes_project 1 90293122 90356201 - MGP_CASTEiJ_P0020508 Asb18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021955.1 MGP_CASTEiJ_G0015942.1 mouse_genomes_project 1 156186743 156215320 + MGP_CASTEiJ_P0021955 Shcbp1l protein_coding protein_coding MGP_CASTEiJ_T0021956.1 MGP_CASTEiJ_G0015942.1 mouse_genomes_project 1 156186753 156202714 + MGP_CASTEiJ_P0021956 Shcbp1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021957.1 MGP_CASTEiJ_G0015942.1 mouse_genomes_project 1 156208131 156211740 + Shcbp1l protein_coding retained_intron MGP_CASTEiJ_T0023326.1 MGP_CASTEiJ_G0016246.1 mouse_genomes_project 1 187790674 187792605 + Aida protein_coding retained_intron MGP_CASTEiJ_T0023327.1 MGP_CASTEiJ_G0016246.1 mouse_genomes_project 1 187791132 187819970 + MGP_CASTEiJ_P0023327 Aida protein_coding protein_coding MGP_CASTEiJ_T0023328.1 MGP_CASTEiJ_G0016246.1 mouse_genomes_project 1 187791653 187813458 + MGP_CASTEiJ_P0023328 Aida protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023329.1 MGP_CASTEiJ_G0016246.1 mouse_genomes_project 1 187799271 187816831 + Aida protein_coding retained_intron MGP_CASTEiJ_T0023330.1 MGP_CASTEiJ_G0016246.1 mouse_genomes_project 1 187801075 187813752 + Aida protein_coding retained_intron MGP_CASTEiJ_T0023331.1 MGP_CASTEiJ_G0016246.1 mouse_genomes_project 1 187816630 187817321 + Aida protein_coding retained_intron MGP_CASTEiJ_T0021175.1 MGP_CASTEiJ_G0015782.1 mouse_genomes_project 1 130573005 130742028 + Thsd7b protein_coding retained_intron MGP_CASTEiJ_T0021176.1 MGP_CASTEiJ_G0015782.1 mouse_genomes_project 1 130573047 131556401 + MGP_CASTEiJ_P0021176 Thsd7b protein_coding protein_coding MGP_CASTEiJ_T0021177.1 MGP_CASTEiJ_G0015782.1 mouse_genomes_project 1 130573166 131388684 + MGP_CASTEiJ_P0021177 Thsd7b protein_coding protein_coding MGP_CASTEiJ_T0021178.1 MGP_CASTEiJ_G0015782.1 mouse_genomes_project 1 130573188 130950004 + Thsd7b protein_coding processed_transcript MGP_CASTEiJ_T0021179.1 MGP_CASTEiJ_G0015782.1 mouse_genomes_project 1 130845395 130950038 + MGP_CASTEiJ_P0021179 Thsd7b protein_coding protein_coding MGP_CASTEiJ_T0021180.1 MGP_CASTEiJ_G0015782.1 mouse_genomes_project 1 130932352 130935121 + Thsd7b protein_coding retained_intron MGP_CASTEiJ_T0021181.1 MGP_CASTEiJ_G0015782.1 mouse_genomes_project 1 131249836 131517919 + Thsd7b protein_coding processed_transcript MGP_CASTEiJ_T0021182.1 MGP_CASTEiJ_G0015782.1 mouse_genomes_project 1 131498092 131556399 + Thsd7b protein_coding processed_transcript MGP_CASTEiJ_T0021183.1 MGP_CASTEiJ_G0015782.1 mouse_genomes_project 1 131498107 131499666 + Thsd7b protein_coding processed_transcript MGP_CASTEiJ_T0100310.1 MGP_CASTEiJ_G0037223.1 mouse_genomes_project 1 129727377 129727511 + Gm23902 snoRNA snoRNA MGP_CASTEiJ_T0011814.1 MGP_CASTEiJ_G0009977.1 mouse_genomes_project 1 92873599 92874010 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000748.1 MGP_CASTEiJ_G0000690.1 mouse_genomes_project 1 191796495 191799429 - TEC TEC MGP_CASTEiJ_T0021088.1 MGP_CASTEiJ_G0015766.1 mouse_genomes_project 1 126779255 126994518 + MGP_CASTEiJ_P0021088 Gpr39 protein_coding protein_coding MGP_CASTEiJ_T0021089.1 MGP_CASTEiJ_G0015766.1 mouse_genomes_project 1 126957673 126993829 + Gpr39 protein_coding processed_transcript MGP_CASTEiJ_T0005867.1 MGP_CASTEiJ_G0004924.1 mouse_genomes_project 1 189064652 189098073 - 1700112H15Rik lincRNA lincRNA MGP_CASTEiJ_T0018395.1 MGP_CASTEiJ_G0015240.1 mouse_genomes_project 1 22007573 22209974 - Col19a1 protein_coding processed_transcript MGP_CASTEiJ_T0018396.1 MGP_CASTEiJ_G0015240.1 mouse_genomes_project 1 22009671 22344410 - MGP_CASTEiJ_P0018396 Col19a1 protein_coding protein_coding MGP_CASTEiJ_T0018397.1 MGP_CASTEiJ_G0015240.1 mouse_genomes_project 1 22025277 22344349 - MGP_CASTEiJ_P0018397 Col19a1 protein_coding protein_coding MGP_CASTEiJ_T0011637.1 MGP_CASTEiJ_G0009800.1 mouse_genomes_project 1 31041101 31042893 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099125.1 MGP_CASTEiJ_G0036038.1 mouse_genomes_project 1 146948456 146948568 - Gm23672 snRNA snRNA MGP_CASTEiJ_T0098801.1 MGP_CASTEiJ_G0035731.1 mouse_genomes_project 1 155437266 155460125 - Gm28792 sense_intronic sense_intronic MGP_CASTEiJ_T0002743.1 MGP_CASTEiJ_G0002604.1 mouse_genomes_project 1 86222605 86247989 - Gm16341 antisense antisense MGP_CASTEiJ_T0000756.1 MGP_CASTEiJ_G0000698.1 mouse_genomes_project 1 196530709 196531731 - TEC TEC MGP_CASTEiJ_T0019004.1 MGP_CASTEiJ_G0015358.1 mouse_genomes_project 1 50840040 50875343 + MGP_CASTEiJ_P0019004 Stat1 protein_coding protein_coding MGP_CASTEiJ_T0019005.1 MGP_CASTEiJ_G0015358.1 mouse_genomes_project 1 50840056 50881813 + MGP_CASTEiJ_P0019005 Stat1 protein_coding protein_coding MGP_CASTEiJ_T0019006.1 MGP_CASTEiJ_G0015358.1 mouse_genomes_project 1 50840091 50875343 + MGP_CASTEiJ_P0019006 Stat1 protein_coding protein_coding MGP_CASTEiJ_T0019007.1 MGP_CASTEiJ_G0015358.1 mouse_genomes_project 1 50840093 50880955 + MGP_CASTEiJ_P0019007 Stat1 protein_coding protein_coding MGP_CASTEiJ_T0019008.1 MGP_CASTEiJ_G0015358.1 mouse_genomes_project 1 50840099 50852524 + MGP_CASTEiJ_P0019008 Stat1 protein_coding protein_coding MGP_CASTEiJ_T0019009.1 MGP_CASTEiJ_G0015358.1 mouse_genomes_project 1 50840150 50875260 + MGP_CASTEiJ_P0019009 Stat1 protein_coding protein_coding MGP_CASTEiJ_T0019010.1 MGP_CASTEiJ_G0015358.1 mouse_genomes_project 1 50840160 50841002 + Stat1 protein_coding retained_intron MGP_CASTEiJ_T0019011.1 MGP_CASTEiJ_G0015358.1 mouse_genomes_project 1 50840173 50857773 + Stat1 protein_coding retained_intron MGP_CASTEiJ_T0019012.1 MGP_CASTEiJ_G0015358.1 mouse_genomes_project 1 50840225 50880680 + MGP_CASTEiJ_P0019012 Stat1 protein_coding protein_coding MGP_CASTEiJ_T0019013.1 MGP_CASTEiJ_G0015358.1 mouse_genomes_project 1 50870029 50872328 + Stat1 protein_coding retained_intron MGP_CASTEiJ_T0019014.1 MGP_CASTEiJ_G0015358.1 mouse_genomes_project 1 50870183 50881811 + MGP_CASTEiJ_P0019014 Stat1 protein_coding protein_coding MGP_CASTEiJ_T0019015.1 MGP_CASTEiJ_G0015358.1 mouse_genomes_project 1 50872181 50879506 + MGP_CASTEiJ_P0019015 Stat1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0010914.1 MGP_CASTEiJ_G0009102.1 mouse_genomes_project 1 46270037 46270307 - Gm23829 misc_RNA misc_RNA MGP_CASTEiJ_T0002770.1 MGP_CASTEiJ_G0002625.1 mouse_genomes_project 1 120310138 120316492 - Gm27184 antisense antisense MGP_CASTEiJ_T0022799.1 MGP_CASTEiJ_G0016112.1 mouse_genomes_project 1 175229584 175252558 - MGP_CASTEiJ_P0022799 Ly9 protein_coding protein_coding MGP_CASTEiJ_T0022800.1 MGP_CASTEiJ_G0016112.1 mouse_genomes_project 1 175229593 175252506 - MGP_CASTEiJ_P0022800 Ly9 protein_coding protein_coding MGP_CASTEiJ_T0022801.1 MGP_CASTEiJ_G0016112.1 mouse_genomes_project 1 175229609 175252482 - MGP_CASTEiJ_P0022801 Ly9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022802.1 MGP_CASTEiJ_G0016112.1 mouse_genomes_project 1 175231450 175252477 - MGP_CASTEiJ_P0022802 Ly9 protein_coding protein_coding MGP_CASTEiJ_T0022803.1 MGP_CASTEiJ_G0016112.1 mouse_genomes_project 1 175240717 175252508 - Ly9 protein_coding retained_intron MGP_CASTEiJ_T0018367.1 MGP_CASTEiJ_G0015233.1 mouse_genomes_project 1 20803086 20804876 - MGP_CASTEiJ_P0018367 4933415F23Rik protein_coding protein_coding MGP_CASTEiJ_T0101906.1 MGP_CASTEiJ_G0038631.1 mouse_genomes_project 1 50854355 50855236 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0023306.1 MGP_CASTEiJ_G0016242.1 mouse_genomes_project 1 187466535 187489396 + MGP_CASTEiJ_P0023306 Tlr5 protein_coding protein_coding MGP_CASTEiJ_T0023307.1 MGP_CASTEiJ_G0016242.1 mouse_genomes_project 1 187466535 187489749 + MGP_CASTEiJ_P0023307 Tlr5 protein_coding protein_coding MGP_CASTEiJ_T0023308.1 MGP_CASTEiJ_G0016242.1 mouse_genomes_project 1 187466569 187483852 + Tlr5 protein_coding processed_transcript MGP_CASTEiJ_T0023309.1 MGP_CASTEiJ_G0016242.1 mouse_genomes_project 1 187466575 187483616 + Tlr5 protein_coding processed_transcript MGP_CASTEiJ_T0023310.1 MGP_CASTEiJ_G0016242.1 mouse_genomes_project 1 187485880 187489704 + MGP_CASTEiJ_P0023310 Tlr5 protein_coding protein_coding MGP_CASTEiJ_T0002896.1 MGP_CASTEiJ_G0002723.1 mouse_genomes_project 1 197074434 197081699 + Gm26879 antisense antisense MGP_CASTEiJ_T0002758.1 MGP_CASTEiJ_G0002619.1 mouse_genomes_project 1 94259358 94282830 + Gm10550 antisense antisense MGP_CASTEiJ_T0011899.1 MGP_CASTEiJ_G0010062.1 mouse_genomes_project 1 129732082 129732674 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011666.1 MGP_CASTEiJ_G0009829.1 mouse_genomes_project 1 39242642 39243138 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018018.1 MGP_CASTEiJ_G0015165.1 mouse_genomes_project 1 2112092 2158648 + MGP_CASTEiJ_P0018018 Tcea1 protein_coding protein_coding MGP_CASTEiJ_T0018019.1 MGP_CASTEiJ_G0015165.1 mouse_genomes_project 1 2112192 2156674 + MGP_CASTEiJ_P0018019 Tcea1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0018020.1 MGP_CASTEiJ_G0015165.1 mouse_genomes_project 1 2112316 2158652 + MGP_CASTEiJ_P0018020 Tcea1 protein_coding protein_coding MGP_CASTEiJ_T0018021.1 MGP_CASTEiJ_G0015165.1 mouse_genomes_project 1 2151924 2156674 + MGP_CASTEiJ_P0018021 Tcea1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099124.1 MGP_CASTEiJ_G0036037.1 mouse_genomes_project 1 143527294 143527401 + Gm25457 snRNA snRNA MGP_CASTEiJ_T0002800.1 MGP_CASTEiJ_G0002648.1 mouse_genomes_project 1 137969052 137984053 + Gm26781 antisense antisense MGP_CASTEiJ_T0000399.1 MGP_CASTEiJ_G0000346.1 mouse_genomes_project 1 31612334 31615201 - TEC TEC MGP_CASTEiJ_T0012034.1 MGP_CASTEiJ_G0010197.1 mouse_genomes_project 1 198481949 198482332 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101943.1 MGP_CASTEiJ_G0038668.1 mouse_genomes_project 1 176814896 176815148 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100267.1 MGP_CASTEiJ_G0037180.1 mouse_genomes_project 1 37893621 37893751 - Gm23722 snoRNA snoRNA MGP_CASTEiJ_T0098307.1 MGP_CASTEiJ_G0035238.1 mouse_genomes_project 1 32816690 32817630 + pseudogene pseudogene MGP_CASTEiJ_T0011669.1 MGP_CASTEiJ_G0009832.1 mouse_genomes_project 1 42903903 42904858 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020950.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119101637 119324750 + MGP_CASTEiJ_P0020950 Clasp1 protein_coding protein_coding MGP_CASTEiJ_T0020951.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119101637 119324750 + MGP_CASTEiJ_P0020951 Clasp1 protein_coding protein_coding MGP_CASTEiJ_T0020952.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119101637 119324750 + MGP_CASTEiJ_P0020952 Clasp1 protein_coding protein_coding MGP_CASTEiJ_T0020953.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119101637 119324817 + MGP_CASTEiJ_P0020953 Clasp1 protein_coding protein_coding MGP_CASTEiJ_T0020954.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119101925 119218033 + Clasp1 protein_coding retained_intron MGP_CASTEiJ_T0020955.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119102029 119322509 + MGP_CASTEiJ_P0020955 Clasp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020956.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119102038 119322926 + MGP_CASTEiJ_P0020956 Clasp1 protein_coding protein_coding MGP_CASTEiJ_T0020957.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119102038 119322926 + MGP_CASTEiJ_P0020957 Clasp1 protein_coding protein_coding MGP_CASTEiJ_T0020958.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119102038 119324811 + MGP_CASTEiJ_P0020958 Clasp1 protein_coding protein_coding MGP_CASTEiJ_T0020959.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119102039 119323083 + MGP_CASTEiJ_P0020959 Clasp1 protein_coding protein_coding MGP_CASTEiJ_T0020960.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119102040 119222391 + Clasp1 protein_coding retained_intron MGP_CASTEiJ_T0020961.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119102056 119322509 + MGP_CASTEiJ_P0020961 Clasp1 protein_coding protein_coding MGP_CASTEiJ_T0020962.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119102100 119324558 + MGP_CASTEiJ_P0020962 Clasp1 protein_coding protein_coding MGP_CASTEiJ_T0020963.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119132780 119324820 + MGP_CASTEiJ_P0020963 Clasp1 protein_coding protein_coding MGP_CASTEiJ_T0020964.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119132944 119322456 + MGP_CASTEiJ_P0020964 Clasp1 protein_coding protein_coding MGP_CASTEiJ_T0020965.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119132944 119327784 + MGP_CASTEiJ_P0020965 Clasp1 protein_coding protein_coding MGP_CASTEiJ_T0020966.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119174691 119212547 + Clasp1 protein_coding retained_intron MGP_CASTEiJ_T0020967.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119185995 119322443 + Clasp1 protein_coding processed_transcript MGP_CASTEiJ_T0020968.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119186050 119218724 + Clasp1 protein_coding processed_transcript MGP_CASTEiJ_T0020969.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119186813 119216190 + Clasp1 protein_coding processed_transcript MGP_CASTEiJ_T0020970.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119187996 119219767 + MGP_CASTEiJ_P0020970 Clasp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020971.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119198327 119322481 + MGP_CASTEiJ_P0020971 Clasp1 protein_coding protein_coding MGP_CASTEiJ_T0020972.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119225030 119240814 + Clasp1 protein_coding retained_intron MGP_CASTEiJ_T0020973.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119227509 119264172 + MGP_CASTEiJ_P0020973 Clasp1 protein_coding protein_coding MGP_CASTEiJ_T0020974.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119247892 119324777 + MGP_CASTEiJ_P0020974 Clasp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020975.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119250600 119253331 + Clasp1 protein_coding retained_intron MGP_CASTEiJ_T0020976.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119263471 119264191 + Clasp1 protein_coding retained_intron MGP_CASTEiJ_T0020977.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119264237 119299199 + MGP_CASTEiJ_P0020977 Clasp1 protein_coding protein_coding MGP_CASTEiJ_T0020978.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119270307 119272415 + Clasp1 protein_coding retained_intron MGP_CASTEiJ_T0020979.1 MGP_CASTEiJ_G0015741.1 mouse_genomes_project 1 119319765 119324750 + Clasp1 protein_coding retained_intron MGP_CASTEiJ_T0023286.1 MGP_CASTEiJ_G0016237.1 mouse_genomes_project 1 186867169 186921038 + MGP_CASTEiJ_P0023286 Trp53bp2 protein_coding protein_coding MGP_CASTEiJ_T0023287.1 MGP_CASTEiJ_G0016237.1 mouse_genomes_project 1 186867303 186920883 + MGP_CASTEiJ_P0023287 Trp53bp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023288.1 MGP_CASTEiJ_G0016237.1 mouse_genomes_project 1 186901968 186920388 + Trp53bp2 protein_coding retained_intron MGP_CASTEiJ_T0023289.1 MGP_CASTEiJ_G0016237.1 mouse_genomes_project 1 186904645 186908382 + MGP_CASTEiJ_P0023289 Trp53bp2 protein_coding protein_coding MGP_CASTEiJ_T0005625.1 MGP_CASTEiJ_G0004733.1 mouse_genomes_project 1 71749146 71780133 + D230017M19Rik lincRNA lincRNA MGP_CASTEiJ_T0005626.1 MGP_CASTEiJ_G0004733.1 mouse_genomes_project 1 71778705 71781186 + D230017M19Rik lincRNA lincRNA MGP_CASTEiJ_T0005627.1 MGP_CASTEiJ_G0004733.1 mouse_genomes_project 1 71778755 71789658 + D230017M19Rik lincRNA lincRNA MGP_CASTEiJ_T0017992.1 MGP_CASTEiJ_G0015160.1 mouse_genomes_project 1 1519079 1588359 - MGP_CASTEiJ_P0017992 protein_coding protein_coding MGP_CASTEiJ_T0017993.1 MGP_CASTEiJ_G0015160.1 mouse_genomes_project 1 1579674 1595829 - MGP_CASTEiJ_P0017993 protein_coding protein_coding MGP_CASTEiJ_T0022715.1 MGP_CASTEiJ_G0016096.1 mouse_genomes_project 1 174814740 174816323 + MGP_CASTEiJ_P0022715 B4galt3 protein_coding protein_coding MGP_CASTEiJ_T0022716.1 MGP_CASTEiJ_G0016096.1 mouse_genomes_project 1 174814743 174821290 + MGP_CASTEiJ_P0022716 B4galt3 protein_coding protein_coding MGP_CASTEiJ_T0022717.1 MGP_CASTEiJ_G0016096.1 mouse_genomes_project 1 174814751 174816424 + B4galt3 protein_coding retained_intron MGP_CASTEiJ_T0022718.1 MGP_CASTEiJ_G0016096.1 mouse_genomes_project 1 174814771 174821283 + B4galt3 protein_coding retained_intron MGP_CASTEiJ_T0022719.1 MGP_CASTEiJ_G0016096.1 mouse_genomes_project 1 174814805 174815758 + B4galt3 protein_coding processed_transcript MGP_CASTEiJ_T0022720.1 MGP_CASTEiJ_G0016096.1 mouse_genomes_project 1 174815215 174816026 + B4galt3 protein_coding retained_intron MGP_CASTEiJ_T0022721.1 MGP_CASTEiJ_G0016096.1 mouse_genomes_project 1 174816023 174816988 + MGP_CASTEiJ_P0022721 B4galt3 protein_coding protein_coding MGP_CASTEiJ_T0022722.1 MGP_CASTEiJ_G0016096.1 mouse_genomes_project 1 174817898 174821281 + B4galt3 protein_coding retained_intron MGP_CASTEiJ_T0005540.1 MGP_CASTEiJ_G0004674.1 mouse_genomes_project 1 37344940 37353890 - Gm37821 lincRNA lincRNA MGP_CASTEiJ_T0100327.1 MGP_CASTEiJ_G0037240.1 mouse_genomes_project 1 164198685 164198745 + Gm23212 snoRNA snoRNA MGP_CASTEiJ_T0101923.1 MGP_CASTEiJ_G0038648.1 mouse_genomes_project 1 88310343 88311137 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011886.1 MGP_CASTEiJ_G0010049.1 mouse_genomes_project 1 122865195 122866505 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023579.1 MGP_CASTEiJ_G0016297.1 mouse_genomes_project 1 197177951 197498501 + MGP_CASTEiJ_P0023579 Kcnh1 protein_coding protein_coding MGP_CASTEiJ_T0023580.1 MGP_CASTEiJ_G0016297.1 mouse_genomes_project 1 197177951 197498501 + MGP_CASTEiJ_P0023580 Kcnh1 protein_coding protein_coding MGP_CASTEiJ_T0023581.1 MGP_CASTEiJ_G0016297.1 mouse_genomes_project 1 197210581 197501520 + MGP_CASTEiJ_P0023581 Kcnh1 protein_coding protein_coding MGP_CASTEiJ_T0023444.1 MGP_CASTEiJ_G0016271.1 mouse_genomes_project 1 194051975 194204514 - MGP_CASTEiJ_P0023444 Kcnk2 protein_coding protein_coding MGP_CASTEiJ_T0023445.1 MGP_CASTEiJ_G0016271.1 mouse_genomes_project 1 194051980 194205623 - MGP_CASTEiJ_P0023445 Kcnk2 protein_coding protein_coding MGP_CASTEiJ_T0023446.1 MGP_CASTEiJ_G0016271.1 mouse_genomes_project 1 194051987 194257457 - MGP_CASTEiJ_P0023446 Kcnk2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023447.1 MGP_CASTEiJ_G0016271.1 mouse_genomes_project 1 194053796 194257402 - MGP_CASTEiJ_P0023447 Kcnk2 protein_coding protein_coding MGP_CASTEiJ_T0023448.1 MGP_CASTEiJ_G0016271.1 mouse_genomes_project 1 194053805 194257397 - MGP_CASTEiJ_P0023448 Kcnk2 protein_coding protein_coding MGP_CASTEiJ_T0023449.1 MGP_CASTEiJ_G0016271.1 mouse_genomes_project 1 194054077 194059354 - Kcnk2 protein_coding processed_transcript MGP_CASTEiJ_T0023450.1 MGP_CASTEiJ_G0016271.1 mouse_genomes_project 1 194054114 194085495 - Kcnk2 protein_coding processed_transcript MGP_CASTEiJ_T0023451.1 MGP_CASTEiJ_G0016271.1 mouse_genomes_project 1 194198421 194208429 - Kcnk2 protein_coding processed_transcript MGP_CASTEiJ_T0011700.1 MGP_CASTEiJ_G0009863.1 mouse_genomes_project 1 48810881 48812464 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021391.1 MGP_CASTEiJ_G0015828.1 mouse_genomes_project 1 134529151 134550677 + MGP_CASTEiJ_P0021391 Pik3c2b protein_coding protein_coding MGP_CASTEiJ_T0021392.1 MGP_CASTEiJ_G0015828.1 mouse_genomes_project 1 134529496 134568481 + Pik3c2b protein_coding retained_intron MGP_CASTEiJ_T0021393.1 MGP_CASTEiJ_G0015828.1 mouse_genomes_project 1 134529496 134551489 + Pik3c2b protein_coding retained_intron MGP_CASTEiJ_T0021394.1 MGP_CASTEiJ_G0015828.1 mouse_genomes_project 1 134529496 134597751 + MGP_CASTEiJ_P0021394 Pik3c2b protein_coding protein_coding MGP_CASTEiJ_T0021421.1 MGP_CASTEiJ_G0015836.1 mouse_genomes_project 1 134890399 134901241 - MGP_CASTEiJ_P0021421 Sox13 protein_coding protein_coding MGP_CASTEiJ_T0021422.1 MGP_CASTEiJ_G0015836.1 mouse_genomes_project 1 134890399 134932741 - MGP_CASTEiJ_P0021422 Sox13 protein_coding protein_coding MGP_CASTEiJ_T0021423.1 MGP_CASTEiJ_G0015836.1 mouse_genomes_project 1 134891747 134901293 - MGP_CASTEiJ_P0021423 Sox13 protein_coding protein_coding MGP_CASTEiJ_T0021424.1 MGP_CASTEiJ_G0015836.1 mouse_genomes_project 1 134892074 134893608 - Sox13 protein_coding retained_intron MGP_CASTEiJ_T0021425.1 MGP_CASTEiJ_G0015836.1 mouse_genomes_project 1 134892633 134894516 - Sox13 protein_coding retained_intron MGP_CASTEiJ_T0002808.1 MGP_CASTEiJ_G0002655.1 mouse_genomes_project 1 153941786 153946233 - Gm10138 antisense antisense MGP_CASTEiJ_T0002809.1 MGP_CASTEiJ_G0002655.1 mouse_genomes_project 1 153944894 153947381 - Gm10138 antisense antisense MGP_CASTEiJ_T0002810.1 MGP_CASTEiJ_G0002655.1 mouse_genomes_project 1 153946519 153946886 - Gm10138 antisense pseudogene MGP_CASTEiJ_T0005508.1 MGP_CASTEiJ_G0004645.1 mouse_genomes_project 1 15834537 15841891 + lincRNA lincRNA MGP_CASTEiJ_T0020247.1 MGP_CASTEiJ_G0015582.1 mouse_genomes_project 1 84858888 84927239 + MGP_CASTEiJ_P0020247 Fbxo36 protein_coding protein_coding MGP_CASTEiJ_T0020248.1 MGP_CASTEiJ_G0015582.1 mouse_genomes_project 1 84858900 84927239 + Fbxo36 protein_coding processed_transcript MGP_CASTEiJ_T0020249.1 MGP_CASTEiJ_G0015582.1 mouse_genomes_project 1 84889990 84927239 + Fbxo36 protein_coding processed_transcript MGP_CASTEiJ_T0020250.1 MGP_CASTEiJ_G0015582.1 mouse_genomes_project 1 84892887 84927239 + Fbxo36 protein_coding processed_transcript MGP_CASTEiJ_T0098443.1 MGP_CASTEiJ_G0035374.1 mouse_genomes_project 1 190754774 190754880 + Gm23821 rRNA rRNA MGP_CASTEiJ_T0011992.1 MGP_CASTEiJ_G0010155.1 mouse_genomes_project 1 174909461 174909797 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000372.1 MGP_CASTEiJ_G0000319.1 mouse_genomes_project 1 23023013 23024047 - TEC TEC MGP_CASTEiJ_T0009241.1 MGP_CASTEiJ_G0007429.1 mouse_genomes_project 1 41642015 41642100 + Gm24001 miRNA miRNA MGP_CASTEiJ_T0002688.1 MGP_CASTEiJ_G0002564.1 mouse_genomes_project 1 37161006 37166407 + antisense antisense MGP_CASTEiJ_T0021509.1 MGP_CASTEiJ_G0015857.1 mouse_genomes_project 1 136034390 136048442 + Klhl12 protein_coding retained_intron MGP_CASTEiJ_T0021510.1 MGP_CASTEiJ_G0015857.1 mouse_genomes_project 1 136034390 136076737 + MGP_CASTEiJ_P0021510 Klhl12 protein_coding protein_coding MGP_CASTEiJ_T0021511.1 MGP_CASTEiJ_G0015857.1 mouse_genomes_project 1 136034390 136076882 + MGP_CASTEiJ_P0021511 Klhl12 protein_coding protein_coding MGP_CASTEiJ_T0021512.1 MGP_CASTEiJ_G0015857.1 mouse_genomes_project 1 136034414 136076737 + MGP_CASTEiJ_P0021512 Klhl12 protein_coding protein_coding MGP_CASTEiJ_T0021513.1 MGP_CASTEiJ_G0015857.1 mouse_genomes_project 1 136054166 136059207 + Klhl12 protein_coding retained_intron MGP_CASTEiJ_T0021514.1 MGP_CASTEiJ_G0015857.1 mouse_genomes_project 1 136060617 136071811 + Klhl12 protein_coding retained_intron MGP_CASTEiJ_T0022982.1 MGP_CASTEiJ_G0016176.1 mouse_genomes_project 1 178444288 178771964 + MGP_CASTEiJ_P0022982 Fmn2 protein_coding protein_coding MGP_CASTEiJ_T0022983.1 MGP_CASTEiJ_G0016176.1 mouse_genomes_project 1 178444403 178577649 + MGP_CASTEiJ_P0022983 Fmn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022984.1 MGP_CASTEiJ_G0016176.1 mouse_genomes_project 1 178482146 178532037 + Fmn2 protein_coding processed_transcript MGP_CASTEiJ_T0022985.1 MGP_CASTEiJ_G0016176.1 mouse_genomes_project 1 178560110 178565937 + Fmn2 protein_coding processed_transcript MGP_CASTEiJ_T0022986.1 MGP_CASTEiJ_G0016176.1 mouse_genomes_project 1 178560111 178648836 + MGP_CASTEiJ_P0022986 Fmn2 protein_coding protein_coding MGP_CASTEiJ_T0022987.1 MGP_CASTEiJ_G0016176.1 mouse_genomes_project 1 178562869 178654685 + Fmn2 protein_coding retained_intron MGP_CASTEiJ_T0022988.1 MGP_CASTEiJ_G0016176.1 mouse_genomes_project 1 178663030 178770542 + Fmn2 protein_coding processed_transcript MGP_CASTEiJ_T0021494.1 MGP_CASTEiJ_G0015854.1 mouse_genomes_project 1 135965494 135970603 + MGP_CASTEiJ_P0021494 4933406M09Rik protein_coding protein_coding MGP_CASTEiJ_T0022017.1 MGP_CASTEiJ_G0015957.1 mouse_genomes_project 1 158009309 158061130 + MGP_CASTEiJ_P0022017 Stx6 protein_coding protein_coding MGP_CASTEiJ_T0022018.1 MGP_CASTEiJ_G0015957.1 mouse_genomes_project 1 158009313 158057412 + MGP_CASTEiJ_P0022018 Stx6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022019.1 MGP_CASTEiJ_G0015957.1 mouse_genomes_project 1 158009342 158053720 + MGP_CASTEiJ_P0022019 Stx6 protein_coding protein_coding MGP_CASTEiJ_T0022020.1 MGP_CASTEiJ_G0015957.1 mouse_genomes_project 1 158009365 158047001 + Stx6 protein_coding processed_transcript MGP_CASTEiJ_T0022021.1 MGP_CASTEiJ_G0015957.1 mouse_genomes_project 1 158009393 158032685 + Stx6 protein_coding retained_intron MGP_CASTEiJ_T0022022.1 MGP_CASTEiJ_G0015957.1 mouse_genomes_project 1 158039523 158043807 + Stx6 protein_coding retained_intron MGP_CASTEiJ_T0022023.1 MGP_CASTEiJ_G0015957.1 mouse_genomes_project 1 158042849 158057490 + Stx6 protein_coding retained_intron MGP_CASTEiJ_T0022024.1 MGP_CASTEiJ_G0015957.1 mouse_genomes_project 1 158043294 158049217 + Stx6 protein_coding retained_intron MGP_CASTEiJ_T0022025.1 MGP_CASTEiJ_G0015957.1 mouse_genomes_project 1 158046982 158063742 + MGP_CASTEiJ_P0022025 Stx6 protein_coding protein_coding MGP_CASTEiJ_T0022026.1 MGP_CASTEiJ_G0015957.1 mouse_genomes_project 1 158050477 158057715 + Stx6 protein_coding processed_transcript MGP_CASTEiJ_T0021980.1 MGP_CASTEiJ_G0015946.1 mouse_genomes_project 1 156522735 156528900 + MGP_CASTEiJ_P0021980 Rgs16 protein_coding protein_coding MGP_CASTEiJ_T0000742.1 MGP_CASTEiJ_G0000684.1 mouse_genomes_project 1 189925626 189928060 + TEC TEC MGP_CASTEiJ_T0005858.1 MGP_CASTEiJ_G0004920.1 mouse_genomes_project 1 188224576 188290735 + Gm34068 lincRNA lincRNA MGP_CASTEiJ_T0018436.1 MGP_CASTEiJ_G0015248.1 mouse_genomes_project 1 29104467 29137940 + MGP_CASTEiJ_P0018436 Lgsn protein_coding protein_coding MGP_CASTEiJ_T0018437.1 MGP_CASTEiJ_G0015248.1 mouse_genomes_project 1 29119946 29137940 + MGP_CASTEiJ_P0018437 Lgsn protein_coding protein_coding MGP_CASTEiJ_T0011696.1 MGP_CASTEiJ_G0009859.1 mouse_genomes_project 1 47914551 47918037 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011863.1 MGP_CASTEiJ_G0010026.1 mouse_genomes_project 1 113723162 113725301 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011691.1 MGP_CASTEiJ_G0009854.1 mouse_genomes_project 1 47218830 47223840 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002750.1 MGP_CASTEiJ_G0002611.1 mouse_genomes_project 1 92231473 92235883 - Gm29100 antisense antisense MGP_CASTEiJ_T0018642.1 MGP_CASTEiJ_G0015286.1 mouse_genomes_project 1 35205234 35260221 + MGP_CASTEiJ_P0018642 Vwa3b protein_coding protein_coding MGP_CASTEiJ_T0018643.1 MGP_CASTEiJ_G0015286.1 mouse_genomes_project 1 35207937 35243736 + MGP_CASTEiJ_P0018643 Vwa3b protein_coding non_stop_decay MGP_CASTEiJ_T0018644.1 MGP_CASTEiJ_G0015286.1 mouse_genomes_project 1 35207949 35260220 + MGP_CASTEiJ_P0018644 Vwa3b protein_coding protein_coding MGP_CASTEiJ_T0018645.1 MGP_CASTEiJ_G0015286.1 mouse_genomes_project 1 35208017 35259950 + MGP_CASTEiJ_P0018645 Vwa3b protein_coding protein_coding MGP_CASTEiJ_T0018646.1 MGP_CASTEiJ_G0015286.1 mouse_genomes_project 1 35214923 35381606 + MGP_CASTEiJ_P0018646 Vwa3b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018647.1 MGP_CASTEiJ_G0015286.1 mouse_genomes_project 1 35214969 35381766 + MGP_CASTEiJ_P0018647 Vwa3b protein_coding unknown_likely_coding MGP_CASTEiJ_T0018648.1 MGP_CASTEiJ_G0015286.1 mouse_genomes_project 1 35286914 35295733 + Vwa3b protein_coding retained_intron MGP_CASTEiJ_T0018649.1 MGP_CASTEiJ_G0015286.1 mouse_genomes_project 1 35287051 35319679 + Vwa3b protein_coding processed_transcript MGP_CASTEiJ_T0018650.1 MGP_CASTEiJ_G0015286.1 mouse_genomes_project 1 35326124 35331905 + MGP_CASTEiJ_P0018650 Vwa3b protein_coding protein_coding MGP_CASTEiJ_T0018651.1 MGP_CASTEiJ_G0015286.1 mouse_genomes_project 1 35343937 35382602 + MGP_CASTEiJ_P0018651 Vwa3b protein_coding protein_coding MGP_CASTEiJ_T0018652.1 MGP_CASTEiJ_G0015286.1 mouse_genomes_project 1 35381851 35382610 + Vwa3b protein_coding retained_intron MGP_CASTEiJ_T0005530.1 MGP_CASTEiJ_G0004665.1 mouse_genomes_project 1 33921242 33929361 + lincRNA lincRNA MGP_CASTEiJ_T0000403.1 MGP_CASTEiJ_G0000349.1 mouse_genomes_project 1 31754260 31754601 + TEC TEC MGP_CASTEiJ_T0000571.1 MGP_CASTEiJ_G0000517.1 mouse_genomes_project 1 127042328 127045030 - TEC TEC MGP_CASTEiJ_T0011720.1 MGP_CASTEiJ_G0009883.1 mouse_genomes_project 1 53932614 53932888 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022668.1 MGP_CASTEiJ_G0016086.1 mouse_genomes_project 1 174644318 174656925 + MGP_CASTEiJ_P0022668 Cfap126 protein_coding protein_coding MGP_CASTEiJ_T0022669.1 MGP_CASTEiJ_G0016086.1 mouse_genomes_project 1 174644389 174656875 + MGP_CASTEiJ_P0022669 Cfap126 protein_coding protein_coding MGP_CASTEiJ_T0022670.1 MGP_CASTEiJ_G0016086.1 mouse_genomes_project 1 174651872 174657063 + MGP_CASTEiJ_P0022670 Cfap126 protein_coding protein_coding MGP_CASTEiJ_T0022671.1 MGP_CASTEiJ_G0016086.1 mouse_genomes_project 1 174651875 174653361 + Cfap126 protein_coding processed_transcript MGP_CASTEiJ_T0022672.1 MGP_CASTEiJ_G0016086.1 mouse_genomes_project 1 174652881 174656133 + MGP_CASTEiJ_P0022672 Cfap126 protein_coding protein_coding MGP_CASTEiJ_T0022673.1 MGP_CASTEiJ_G0016086.1 mouse_genomes_project 1 174653378 174656177 + MGP_CASTEiJ_P0022673 Cfap126 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022674.1 MGP_CASTEiJ_G0016086.1 mouse_genomes_project 1 174655176 174656755 + MGP_CASTEiJ_P0022674 Cfap126 protein_coding protein_coding MGP_CASTEiJ_T0002897.1 MGP_CASTEiJ_G0002724.1 mouse_genomes_project 1 197122219 197141014 + Gm10516 antisense antisense MGP_CASTEiJ_T0002898.1 MGP_CASTEiJ_G0002724.1 mouse_genomes_project 1 197122663 197135413 + Gm10516 antisense antisense MGP_CASTEiJ_T0021739.1 MGP_CASTEiJ_G0015901.1 mouse_genomes_project 1 141341256 141362126 + MGP_CASTEiJ_P0021739 Zbtb41 protein_coding protein_coding MGP_CASTEiJ_T0021740.1 MGP_CASTEiJ_G0015901.1 mouse_genomes_project 1 141341344 141368602 + MGP_CASTEiJ_P0021740 Zbtb41 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021741.1 MGP_CASTEiJ_G0015901.1 mouse_genomes_project 1 141341350 141373240 + MGP_CASTEiJ_P0021741 Zbtb41 protein_coding protein_coding MGP_CASTEiJ_T0021742.1 MGP_CASTEiJ_G0015901.1 mouse_genomes_project 1 141342621 141369421 + MGP_CASTEiJ_P0021742 Zbtb41 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000442.1 MGP_CASTEiJ_G0000388.1 mouse_genomes_project 1 54769188 54769541 - TEC TEC MGP_CASTEiJ_T0002693.1 MGP_CASTEiJ_G0002568.1 mouse_genomes_project 1 39062028 39068237 - Gm37623 antisense antisense MGP_CASTEiJ_T0022861.1 MGP_CASTEiJ_G0016124.1 mouse_genomes_project 1 175860067 175869822 - MGP_CASTEiJ_P0022861 Pea15a protein_coding protein_coding MGP_CASTEiJ_T0022862.1 MGP_CASTEiJ_G0016124.1 mouse_genomes_project 1 175860067 175869822 - MGP_CASTEiJ_P0022862 Pea15a protein_coding protein_coding MGP_CASTEiJ_T0022863.1 MGP_CASTEiJ_G0016124.1 mouse_genomes_project 1 175861755 175862896 - Pea15a protein_coding processed_transcript MGP_CASTEiJ_T0022864.1 MGP_CASTEiJ_G0016124.1 mouse_genomes_project 1 175862254 175869715 - MGP_CASTEiJ_P0022864 Pea15a protein_coding protein_coding MGP_CASTEiJ_T0022865.1 MGP_CASTEiJ_G0016124.1 mouse_genomes_project 1 175862855 175869822 - Pea15a protein_coding retained_intron MGP_CASTEiJ_T0022731.1 MGP_CASTEiJ_G0016098.1 mouse_genomes_project 1 174826331 174832394 - MGP_CASTEiJ_P0022731 Usp21 protein_coding protein_coding MGP_CASTEiJ_T0022732.1 MGP_CASTEiJ_G0016098.1 mouse_genomes_project 1 174826335 174832327 - MGP_CASTEiJ_P0022732 Usp21 protein_coding protein_coding MGP_CASTEiJ_T0022733.1 MGP_CASTEiJ_G0016098.1 mouse_genomes_project 1 174826344 174827310 - Usp21 protein_coding retained_intron MGP_CASTEiJ_T0022734.1 MGP_CASTEiJ_G0016098.1 mouse_genomes_project 1 174826344 174832364 - MGP_CASTEiJ_P0022734 Usp21 protein_coding protein_coding MGP_CASTEiJ_T0022735.1 MGP_CASTEiJ_G0016098.1 mouse_genomes_project 1 174826344 174832358 - MGP_CASTEiJ_P0022735 Usp21 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022736.1 MGP_CASTEiJ_G0016098.1 mouse_genomes_project 1 174826688 174827570 - Usp21 protein_coding retained_intron MGP_CASTEiJ_T0022737.1 MGP_CASTEiJ_G0016098.1 mouse_genomes_project 1 174827202 174828990 - Usp21 protein_coding retained_intron MGP_CASTEiJ_T0022738.1 MGP_CASTEiJ_G0016098.1 mouse_genomes_project 1 174827434 174828387 - Usp21 protein_coding retained_intron MGP_CASTEiJ_T0022739.1 MGP_CASTEiJ_G0016098.1 mouse_genomes_project 1 174827808 174830017 - Usp21 protein_coding retained_intron MGP_CASTEiJ_T0022740.1 MGP_CASTEiJ_G0016098.1 mouse_genomes_project 1 174827921 174831353 - Usp21 protein_coding retained_intron MGP_CASTEiJ_T0022741.1 MGP_CASTEiJ_G0016098.1 mouse_genomes_project 1 174828865 174832362 - Usp21 protein_coding retained_intron MGP_CASTEiJ_T0022742.1 MGP_CASTEiJ_G0016098.1 mouse_genomes_project 1 174829334 174831209 - MGP_CASTEiJ_P0022742 Usp21 protein_coding protein_coding MGP_CASTEiJ_T0000714.1 MGP_CASTEiJ_G0000658.1 mouse_genomes_project 1 181050051 181051960 - TEC TEC MGP_CASTEiJ_T0005870.1 MGP_CASTEiJ_G0004926.1 mouse_genomes_project 1 189256241 189263979 + 4930488B22Rik lincRNA lincRNA MGP_CASTEiJ_T0010921.1 MGP_CASTEiJ_G0009109.1 mouse_genomes_project 1 74418324 74418417 + Gm27507 misc_RNA misc_RNA MGP_CASTEiJ_T0021159.1 MGP_CASTEiJ_G0015777.1 mouse_genomes_project 1 129457447 129475476 + MGP_CASTEiJ_P0021159 Ubxn4 protein_coding protein_coding MGP_CASTEiJ_T0021160.1 MGP_CASTEiJ_G0015777.1 mouse_genomes_project 1 129457645 129501093 + MGP_CASTEiJ_P0021160 Ubxn4 protein_coding protein_coding MGP_CASTEiJ_T0021161.1 MGP_CASTEiJ_G0015777.1 mouse_genomes_project 1 129475444 129494880 + Ubxn4 protein_coding retained_intron MGP_CASTEiJ_T0021162.1 MGP_CASTEiJ_G0015777.1 mouse_genomes_project 1 129496343 129498735 + Ubxn4 protein_coding retained_intron MGP_CASTEiJ_T0000588.1 MGP_CASTEiJ_G0000534.1 mouse_genomes_project 1 131839808 131842054 + TEC TEC MGP_CASTEiJ_T0011610.1 MGP_CASTEiJ_G0009773.1 mouse_genomes_project 1 18380544 18381687 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020128.1 MGP_CASTEiJ_G0015561.1 mouse_genomes_project 1 79600022 79667136 - MGP_CASTEiJ_P0020128 Serpine2 protein_coding protein_coding MGP_CASTEiJ_T0020129.1 MGP_CASTEiJ_G0015561.1 mouse_genomes_project 1 79602656 79627139 - MGP_CASTEiJ_P0020129 Serpine2 protein_coding protein_coding MGP_CASTEiJ_T0020130.1 MGP_CASTEiJ_G0015561.1 mouse_genomes_project 1 79608879 79669621 - MGP_CASTEiJ_P0020130 Serpine2 protein_coding protein_coding MGP_CASTEiJ_T0020131.1 MGP_CASTEiJ_G0015561.1 mouse_genomes_project 1 79620922 79667136 - Serpine2 protein_coding retained_intron MGP_CASTEiJ_T0020132.1 MGP_CASTEiJ_G0015561.1 mouse_genomes_project 1 79622734 79626137 - Serpine2 protein_coding retained_intron MGP_CASTEiJ_T0020133.1 MGP_CASTEiJ_G0015561.1 mouse_genomes_project 1 79665707 79666839 - Serpine2 protein_coding retained_intron MGP_CASTEiJ_T0101917.1 MGP_CASTEiJ_G0038642.1 mouse_genomes_project 1 88090171 88091026 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011799.1 MGP_CASTEiJ_G0009962.1 mouse_genomes_project 1 83320055 83320843 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000581.1 MGP_CASTEiJ_G0000527.1 mouse_genomes_project 1 129373596 129374911 + TEC TEC MGP_CASTEiJ_T0000490.1 MGP_CASTEiJ_G0000436.1 mouse_genomes_project 1 79422214 79423732 - TEC TEC MGP_CASTEiJ_T0018473.1 MGP_CASTEiJ_G0015257.1 mouse_genomes_project 1 31861549 31924551 - MGP_CASTEiJ_P0018473 Bend6 protein_coding protein_coding MGP_CASTEiJ_T0018474.1 MGP_CASTEiJ_G0015257.1 mouse_genomes_project 1 31861549 31924572 - MGP_CASTEiJ_P0018474 Bend6 protein_coding protein_coding MGP_CASTEiJ_T0018475.1 MGP_CASTEiJ_G0015257.1 mouse_genomes_project 1 31873042 31893848 - Bend6 protein_coding processed_transcript MGP_CASTEiJ_T0018476.1 MGP_CASTEiJ_G0015257.1 mouse_genomes_project 1 31873487 31894210 - Bend6 protein_coding retained_intron MGP_CASTEiJ_T0018477.1 MGP_CASTEiJ_G0015257.1 mouse_genomes_project 1 31883904 31893858 - Bend6 protein_coding processed_transcript MGP_CASTEiJ_T0011638.1 MGP_CASTEiJ_G0009801.1 mouse_genomes_project 1 31133245 31133996 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023065.1 MGP_CASTEiJ_G0016192.1 mouse_genomes_project 1 181787472 181811898 + MGP_CASTEiJ_P0023065 1700016C15Rik protein_coding protein_coding MGP_CASTEiJ_T0000392.1 MGP_CASTEiJ_G0000339.1 mouse_genomes_project 1 28747739 28752653 - TEC TEC MGP_CASTEiJ_T0009260.1 MGP_CASTEiJ_G0007448.1 mouse_genomes_project 1 74567457 74567521 - Mir375 miRNA miRNA MGP_CASTEiJ_T0012000.1 MGP_CASTEiJ_G0010163.1 mouse_genomes_project 1 180841196 180841533 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000660.1 MGP_CASTEiJ_G0000604.1 mouse_genomes_project 1 159566715 159567115 + TEC TEC MGP_CASTEiJ_T0022640.1 MGP_CASTEiJ_G0016078.1 mouse_genomes_project 1 174195479 174378034 - MGP_CASTEiJ_P0022640 Atf6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022641.1 MGP_CASTEiJ_G0016078.1 mouse_genomes_project 1 174293446 174295739 - Atf6 protein_coding retained_intron MGP_CASTEiJ_T0011841.1 MGP_CASTEiJ_G0010004.1 mouse_genomes_project 1 106164838 106165455 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023205.1 MGP_CASTEiJ_G0016221.1 mouse_genomes_project 1 185258856 185262658 + MGP_CASTEiJ_P0023205 Pycr2 protein_coding protein_coding MGP_CASTEiJ_T0023206.1 MGP_CASTEiJ_G0016221.1 mouse_genomes_project 1 185258872 185261193 + Pycr2 protein_coding retained_intron MGP_CASTEiJ_T0023207.1 MGP_CASTEiJ_G0016221.1 mouse_genomes_project 1 185258886 185262657 + Pycr2 protein_coding retained_intron MGP_CASTEiJ_T0023208.1 MGP_CASTEiJ_G0016221.1 mouse_genomes_project 1 185260488 185261476 + Pycr2 protein_coding retained_intron MGP_CASTEiJ_T0020228.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84730556 84858393 - MGP_CASTEiJ_P0020228 Trip12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020229.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84730556 84859564 - MGP_CASTEiJ_P0020229 Trip12 protein_coding protein_coding MGP_CASTEiJ_T0020230.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84730557 84858348 - MGP_CASTEiJ_P0020230 Trip12 protein_coding protein_coding MGP_CASTEiJ_T0020231.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84733612 84858332 - MGP_CASTEiJ_P0020231 Trip12 protein_coding protein_coding MGP_CASTEiJ_T0020232.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84733612 84759217 - MGP_CASTEiJ_P0020232 Trip12 protein_coding protein_coding MGP_CASTEiJ_T0020233.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84733925 84740933 - MGP_CASTEiJ_P0020233 Trip12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020234.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84735566 84738113 - Trip12 protein_coding retained_intron MGP_CASTEiJ_T0020235.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84737843 84741004 - Trip12 protein_coding retained_intron MGP_CASTEiJ_T0020236.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84754641 84764365 - MGP_CASTEiJ_P0020236 Trip12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020237.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84759097 84760481 - Trip12 protein_coding retained_intron MGP_CASTEiJ_T0020238.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84759158 84858355 - MGP_CASTEiJ_P0020238 Trip12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020239.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84764363 84858348 - MGP_CASTEiJ_P0020239 Trip12 protein_coding protein_coding MGP_CASTEiJ_T0020240.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84766614 84770150 - Trip12 protein_coding retained_intron MGP_CASTEiJ_T0020241.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84776810 84777575 - Trip12 protein_coding retained_intron MGP_CASTEiJ_T0020242.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84776846 84806812 - MGP_CASTEiJ_P0020242 Trip12 protein_coding protein_coding MGP_CASTEiJ_T0020243.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84793147 84795079 - Trip12 protein_coding retained_intron MGP_CASTEiJ_T0020244.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84793613 84858345 - MGP_CASTEiJ_P0020244 Trip12 protein_coding protein_coding MGP_CASTEiJ_T0020245.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84807247 84859314 - MGP_CASTEiJ_P0020245 Trip12 protein_coding protein_coding MGP_CASTEiJ_T0020246.1 MGP_CASTEiJ_G0015581.1 mouse_genomes_project 1 84807491 84857530 - MGP_CASTEiJ_P0020246 Trip12 protein_coding protein_coding MGP_CASTEiJ_T0009300.1 MGP_CASTEiJ_G0007488.1 mouse_genomes_project 1 165454005 165454115 + Mir214 miRNA miRNA MGP_CASTEiJ_T0016239.1 MGP_CASTEiJ_G0014402.1 mouse_genomes_project 1 1733160 1736008 + Gm37587 processed_transcript retained_intron MGP_CASTEiJ_T0016240.1 MGP_CASTEiJ_G0014402.1 mouse_genomes_project 1 1734083 1736186 + Gm37587 processed_transcript antisense MGP_CASTEiJ_T0020559.1 MGP_CASTEiJ_G0015653.1 mouse_genomes_project 1 91578233 91605064 + MGP_CASTEiJ_P0020559 Ramp1 protein_coding protein_coding MGP_CASTEiJ_T0020560.1 MGP_CASTEiJ_G0015653.1 mouse_genomes_project 1 91578453 91605064 + MGP_CASTEiJ_P0020560 Ramp1 protein_coding protein_coding MGP_CASTEiJ_T0020561.1 MGP_CASTEiJ_G0015653.1 mouse_genomes_project 1 91578457 91630160 + MGP_CASTEiJ_P0020561 Ramp1 protein_coding protein_coding MGP_CASTEiJ_T0023676.1 MGP_CASTEiJ_G0016313.1 mouse_genomes_project 1 200201624 200248598 - MGP_CASTEiJ_P0023676 Cr2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023677.1 MGP_CASTEiJ_G0016313.1 mouse_genomes_project 1 200201629 200248703 - MGP_CASTEiJ_P0023677 Cr2 protein_coding protein_coding MGP_CASTEiJ_T0023678.1 MGP_CASTEiJ_G0016313.1 mouse_genomes_project 1 200201629 200248704 - MGP_CASTEiJ_P0023678 Cr2 protein_coding protein_coding MGP_CASTEiJ_T0023679.1 MGP_CASTEiJ_G0016313.1 mouse_genomes_project 1 200201635 200228368 - MGP_CASTEiJ_P0023679 Cr2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023680.1 MGP_CASTEiJ_G0016313.1 mouse_genomes_project 1 200204136 200221636 - Cr2 protein_coding retained_intron MGP_CASTEiJ_T0023681.1 MGP_CASTEiJ_G0016313.1 mouse_genomes_project 1 200204480 200218990 - MGP_CASTEiJ_P0023681 Cr2 protein_coding protein_coding MGP_CASTEiJ_T0023682.1 MGP_CASTEiJ_G0016313.1 mouse_genomes_project 1 200204500 200248636 - MGP_CASTEiJ_P0023682 Cr2 protein_coding protein_coding MGP_CASTEiJ_T0023683.1 MGP_CASTEiJ_G0016313.1 mouse_genomes_project 1 200232575 200238798 - Cr2 protein_coding processed_transcript MGP_CASTEiJ_T0023684.1 MGP_CASTEiJ_G0016313.1 mouse_genomes_project 1 200235122 200241549 - MGP_CASTEiJ_P0023684 Cr2 protein_coding protein_coding MGP_CASTEiJ_T0023685.1 MGP_CASTEiJ_G0016313.1 mouse_genomes_project 1 200235209 200248703 - Cr2 protein_coding processed_transcript MGP_CASTEiJ_T0023686.1 MGP_CASTEiJ_G0016313.1 mouse_genomes_project 1 200241025 200248703 - Cr2 protein_coding processed_transcript MGP_CASTEiJ_T0005732.1 MGP_CASTEiJ_G0004818.1 mouse_genomes_project 1 123110627 123161861 + Gm28590 lincRNA lincRNA MGP_CASTEiJ_T0000540.1 MGP_CASTEiJ_G0000486.1 mouse_genomes_project 1 98358911 98360593 - TEC TEC MGP_CASTEiJ_T0005553.1 MGP_CASTEiJ_G0004683.1 mouse_genomes_project 1 41167347 41279601 - Pantr1 lincRNA lincRNA MGP_CASTEiJ_T0005554.1 MGP_CASTEiJ_G0004683.1 mouse_genomes_project 1 41229419 41276561 - Pantr1 lincRNA lincRNA MGP_CASTEiJ_T0005555.1 MGP_CASTEiJ_G0004683.1 mouse_genomes_project 1 41229425 41248115 - Pantr1 lincRNA lincRNA MGP_CASTEiJ_T0005556.1 MGP_CASTEiJ_G0004683.1 mouse_genomes_project 1 41229426 41232893 - Pantr1 lincRNA lincRNA MGP_CASTEiJ_T0005557.1 MGP_CASTEiJ_G0004683.1 mouse_genomes_project 1 41229426 41279618 - Pantr1 lincRNA lincRNA MGP_CASTEiJ_T0005558.1 MGP_CASTEiJ_G0004683.1 mouse_genomes_project 1 41229426 41276586 - Pantr1 lincRNA lincRNA MGP_CASTEiJ_T0005559.1 MGP_CASTEiJ_G0004683.1 mouse_genomes_project 1 41229426 41279618 - Pantr1 lincRNA lincRNA MGP_CASTEiJ_T0005560.1 MGP_CASTEiJ_G0004683.1 mouse_genomes_project 1 41229427 41248812 - Pantr1 lincRNA lincRNA MGP_CASTEiJ_T0005561.1 MGP_CASTEiJ_G0004683.1 mouse_genomes_project 1 41229427 41276526 - Pantr1 lincRNA lincRNA MGP_CASTEiJ_T0005562.1 MGP_CASTEiJ_G0004683.1 mouse_genomes_project 1 41229604 41248036 - Pantr1 lincRNA lincRNA MGP_CASTEiJ_T0005563.1 MGP_CASTEiJ_G0004683.1 mouse_genomes_project 1 41247975 41279635 - Pantr1 lincRNA lincRNA MGP_CASTEiJ_T0005564.1 MGP_CASTEiJ_G0004683.1 mouse_genomes_project 1 41276460 41279618 - Pantr1 lincRNA lincRNA MGP_CASTEiJ_T0011694.1 MGP_CASTEiJ_G0009857.1 mouse_genomes_project 1 47688014 47688229 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022552.1 MGP_CASTEiJ_G0016052.1 mouse_genomes_project 1 169794096 169807738 - MGP_CASTEiJ_P0022552 Gm4846 protein_coding protein_coding MGP_CASTEiJ_T0022978.1 MGP_CASTEiJ_G0016174.1 mouse_genomes_project 1 178362085 178370016 + MGP_CASTEiJ_P0022978 Olfr414 protein_coding protein_coding MGP_CASTEiJ_T0022979.1 MGP_CASTEiJ_G0016174.1 mouse_genomes_project 1 178368858 178369813 + MGP_CASTEiJ_P0022979 Olfr414 protein_coding protein_coding MGP_CASTEiJ_T0005778.1 MGP_CASTEiJ_G0004858.1 mouse_genomes_project 1 154378906 154384972 - 2810414N06Rik lincRNA lincRNA MGP_CASTEiJ_T0005848.1 MGP_CASTEiJ_G0004913.1 mouse_genomes_project 1 186234236 186242761 + lincRNA lincRNA MGP_CASTEiJ_T0005849.1 MGP_CASTEiJ_G0004913.1 mouse_genomes_project 1 186237065 186242739 + lincRNA lincRNA MGP_CASTEiJ_T0005850.1 MGP_CASTEiJ_G0004913.1 mouse_genomes_project 1 186241483 186243790 + lincRNA lincRNA MGP_CASTEiJ_T0019193.1 MGP_CASTEiJ_G0015394.1 mouse_genomes_project 1 56627235 56743788 + MGP_CASTEiJ_P0019193 Spats2l protein_coding protein_coding MGP_CASTEiJ_T0019194.1 MGP_CASTEiJ_G0015394.1 mouse_genomes_project 1 56627321 56737715 + Spats2l protein_coding retained_intron MGP_CASTEiJ_T0019195.1 MGP_CASTEiJ_G0015394.1 mouse_genomes_project 1 56627373 56760132 + MGP_CASTEiJ_P0019195 Spats2l protein_coding protein_coding MGP_CASTEiJ_T0019196.1 MGP_CASTEiJ_G0015394.1 mouse_genomes_project 1 56627437 56802526 + MGP_CASTEiJ_P0019196 Spats2l protein_coding protein_coding MGP_CASTEiJ_T0019197.1 MGP_CASTEiJ_G0015394.1 mouse_genomes_project 1 56627491 56653578 + Spats2l protein_coding retained_intron MGP_CASTEiJ_T0019198.1 MGP_CASTEiJ_G0015394.1 mouse_genomes_project 1 56627672 56743856 + MGP_CASTEiJ_P0019198 Spats2l protein_coding protein_coding MGP_CASTEiJ_T0019199.1 MGP_CASTEiJ_G0015394.1 mouse_genomes_project 1 56627807 56802527 + MGP_CASTEiJ_P0019199 Spats2l protein_coding protein_coding MGP_CASTEiJ_T0019200.1 MGP_CASTEiJ_G0015394.1 mouse_genomes_project 1 56627816 56793848 + MGP_CASTEiJ_P0019200 Spats2l protein_coding protein_coding MGP_CASTEiJ_T0019201.1 MGP_CASTEiJ_G0015394.1 mouse_genomes_project 1 56627827 56802527 + MGP_CASTEiJ_P0019201 Spats2l protein_coding protein_coding MGP_CASTEiJ_T0019202.1 MGP_CASTEiJ_G0015394.1 mouse_genomes_project 1 56627933 56803972 + MGP_CASTEiJ_P0019202 Spats2l protein_coding protein_coding MGP_CASTEiJ_T0019203.1 MGP_CASTEiJ_G0015394.1 mouse_genomes_project 1 56627962 56711704 + Spats2l protein_coding retained_intron MGP_CASTEiJ_T0019204.1 MGP_CASTEiJ_G0015394.1 mouse_genomes_project 1 56627984 56686838 + Spats2l protein_coding retained_intron MGP_CASTEiJ_T0019205.1 MGP_CASTEiJ_G0015394.1 mouse_genomes_project 1 56627989 56652716 + Spats2l protein_coding retained_intron MGP_CASTEiJ_T0019206.1 MGP_CASTEiJ_G0015394.1 mouse_genomes_project 1 56700153 56802527 + MGP_CASTEiJ_P0019206 Spats2l protein_coding protein_coding MGP_CASTEiJ_T0019207.1 MGP_CASTEiJ_G0015394.1 mouse_genomes_project 1 56760093 56796180 + Spats2l protein_coding retained_intron MGP_CASTEiJ_T0000701.1 MGP_CASTEiJ_G0000645.1 mouse_genomes_project 1 174900754 174902020 + TEC TEC MGP_CASTEiJ_T0011920.1 MGP_CASTEiJ_G0010083.1 mouse_genomes_project 1 144782053 144782671 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011776.1 MGP_CASTEiJ_G0009939.1 mouse_genomes_project 1 72908885 72909219 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019780.1 MGP_CASTEiJ_G0015504.1 mouse_genomes_project 1 74056426 74084112 + MGP_CASTEiJ_P0019780 Vil1 protein_coding protein_coding MGP_CASTEiJ_T0019781.1 MGP_CASTEiJ_G0015504.1 mouse_genomes_project 1 74067657 74071597 + MGP_CASTEiJ_P0019781 Vil1 protein_coding protein_coding MGP_CASTEiJ_T0019782.1 MGP_CASTEiJ_G0015504.1 mouse_genomes_project 1 74070002 74071590 + Vil1 protein_coding retained_intron MGP_CASTEiJ_T0019783.1 MGP_CASTEiJ_G0015504.1 mouse_genomes_project 1 74072262 74074504 + Vil1 protein_coding retained_intron MGP_CASTEiJ_T0005649.1 MGP_CASTEiJ_G0004750.1 mouse_genomes_project 1 78619546 78620941 + Gm29187 lincRNA lincRNA MGP_CASTEiJ_T0019405.1 MGP_CASTEiJ_G0015428.1 mouse_genomes_project 1 59357975 59390933 + Cyp20a1 protein_coding retained_intron MGP_CASTEiJ_T0019406.1 MGP_CASTEiJ_G0015428.1 mouse_genomes_project 1 59357975 59410106 + MGP_CASTEiJ_P0019406 Cyp20a1 protein_coding protein_coding MGP_CASTEiJ_T0019407.1 MGP_CASTEiJ_G0015428.1 mouse_genomes_project 1 59357975 59410106 + MGP_CASTEiJ_P0019407 Cyp20a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022977.1 MGP_CASTEiJ_G0016173.1 mouse_genomes_project 1 178339133 178340142 + MGP_CASTEiJ_P0022977 Olfr248 protein_coding protein_coding MGP_CASTEiJ_T0000607.1 MGP_CASTEiJ_G0000552.1 mouse_genomes_project 1 137578586 137581292 - TEC TEC MGP_CASTEiJ_T0020659.1 MGP_CASTEiJ_G0015677.1 mouse_genomes_project 1 93390880 93392323 + MGP_CASTEiJ_P0020659 Dusp28 protein_coding protein_coding MGP_CASTEiJ_T0022451.1 MGP_CASTEiJ_G0016035.1 mouse_genomes_project 1 168488393 168509126 - MGP_CASTEiJ_P0022451 Sft2d2 protein_coding protein_coding MGP_CASTEiJ_T0022452.1 MGP_CASTEiJ_G0016035.1 mouse_genomes_project 1 168489321 168509009 - MGP_CASTEiJ_P0022452 Sft2d2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022453.1 MGP_CASTEiJ_G0016035.1 mouse_genomes_project 1 168492630 168509005 - MGP_CASTEiJ_P0022453 Sft2d2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011684.1 MGP_CASTEiJ_G0009847.1 mouse_genomes_project 1 44643581 44644655 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000319.1 MGP_CASTEiJ_G0000268.1 mouse_genomes_project 1 704552 706609 - TEC TEC MGP_CASTEiJ_T0011846.1 MGP_CASTEiJ_G0010009.1 mouse_genomes_project 1 108662444 108663043 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018779.1 MGP_CASTEiJ_G0015311.1 mouse_genomes_project 1 37870446 37897286 - MGP_CASTEiJ_P0018779 Rnf149 protein_coding protein_coding MGP_CASTEiJ_T0018780.1 MGP_CASTEiJ_G0015311.1 mouse_genomes_project 1 37871618 37897237 - MGP_CASTEiJ_P0018780 Rnf149 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018781.1 MGP_CASTEiJ_G0015311.1 mouse_genomes_project 1 37874750 37877919 - Rnf149 protein_coding retained_intron MGP_CASTEiJ_T0018782.1 MGP_CASTEiJ_G0015311.1 mouse_genomes_project 1 37884248 37897184 - MGP_CASTEiJ_P0018782 Rnf149 protein_coding protein_coding MGP_CASTEiJ_T0022938.1 MGP_CASTEiJ_G0016150.1 mouse_genomes_project 1 177063906 177101487 - MGP_CASTEiJ_P0022938 Cadm3 protein_coding protein_coding MGP_CASTEiJ_T0022939.1 MGP_CASTEiJ_G0016150.1 mouse_genomes_project 1 177066664 177101477 - MGP_CASTEiJ_P0022939 Cadm3 protein_coding protein_coding MGP_CASTEiJ_T0022940.1 MGP_CASTEiJ_G0016150.1 mouse_genomes_project 1 177067516 177072823 - Cadm3 protein_coding retained_intron MGP_CASTEiJ_T0022941.1 MGP_CASTEiJ_G0016150.1 mouse_genomes_project 1 177074347 177101440 - Cadm3 protein_coding retained_intron MGP_CASTEiJ_T0022942.1 MGP_CASTEiJ_G0016150.1 mouse_genomes_project 1 177076691 177101425 - Cadm3 protein_coding retained_intron MGP_CASTEiJ_T0019394.1 MGP_CASTEiJ_G0015427.1 mouse_genomes_project 1 59190606 59352928 + MGP_CASTEiJ_P0019394 Nbeal1 protein_coding protein_coding MGP_CASTEiJ_T0019395.1 MGP_CASTEiJ_G0015427.1 mouse_genomes_project 1 59190819 59195892 + Nbeal1 protein_coding retained_intron MGP_CASTEiJ_T0019396.1 MGP_CASTEiJ_G0015427.1 mouse_genomes_project 1 59190835 59343964 + MGP_CASTEiJ_P0019396 Nbeal1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0019397.1 MGP_CASTEiJ_G0015427.1 mouse_genomes_project 1 59234430 59248760 + MGP_CASTEiJ_P0019397 Nbeal1 protein_coding protein_coding MGP_CASTEiJ_T0019398.1 MGP_CASTEiJ_G0015427.1 mouse_genomes_project 1 59239443 59242120 + Nbeal1 protein_coding retained_intron MGP_CASTEiJ_T0019399.1 MGP_CASTEiJ_G0015427.1 mouse_genomes_project 1 59248662 59299009 + Nbeal1 protein_coding retained_intron MGP_CASTEiJ_T0019400.1 MGP_CASTEiJ_G0015427.1 mouse_genomes_project 1 59277323 59340380 + MGP_CASTEiJ_P0019400 Nbeal1 protein_coding protein_coding MGP_CASTEiJ_T0019401.1 MGP_CASTEiJ_G0015427.1 mouse_genomes_project 1 59277331 59344417 + MGP_CASTEiJ_P0019401 Nbeal1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019402.1 MGP_CASTEiJ_G0015427.1 mouse_genomes_project 1 59283115 59286322 + Nbeal1 protein_coding retained_intron MGP_CASTEiJ_T0019403.1 MGP_CASTEiJ_G0015427.1 mouse_genomes_project 1 59295762 59310306 + MGP_CASTEiJ_P0019403 Nbeal1 protein_coding protein_coding MGP_CASTEiJ_T0019404.1 MGP_CASTEiJ_G0015427.1 mouse_genomes_project 1 59300919 59303188 + Nbeal1 protein_coding retained_intron MGP_CASTEiJ_T0011551.1 MGP_CASTEiJ_G0009714.1 mouse_genomes_project 1 1927619 1929083 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020420.1 MGP_CASTEiJ_G0015619.1 mouse_genomes_project 1 87655513 87672452 + Inpp5d protein_coding retained_intron MGP_CASTEiJ_T0020421.1 MGP_CASTEiJ_G0015619.1 mouse_genomes_project 1 87655519 87762676 + MGP_CASTEiJ_P0020421 Inpp5d protein_coding protein_coding MGP_CASTEiJ_T0020422.1 MGP_CASTEiJ_G0015619.1 mouse_genomes_project 1 87655546 87682210 + Inpp5d protein_coding processed_transcript MGP_CASTEiJ_T0020423.1 MGP_CASTEiJ_G0015619.1 mouse_genomes_project 1 87655555 87762676 + MGP_CASTEiJ_P0020423 Inpp5d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020424.1 MGP_CASTEiJ_G0015619.1 mouse_genomes_project 1 87655556 87761866 + MGP_CASTEiJ_P0020424 Inpp5d protein_coding protein_coding MGP_CASTEiJ_T0020425.1 MGP_CASTEiJ_G0015619.1 mouse_genomes_project 1 87655646 87762683 + MGP_CASTEiJ_P0020425 Inpp5d protein_coding protein_coding MGP_CASTEiJ_T0020426.1 MGP_CASTEiJ_G0015619.1 mouse_genomes_project 1 87655784 87705040 + MGP_CASTEiJ_P0020426 Inpp5d protein_coding protein_coding MGP_CASTEiJ_T0020427.1 MGP_CASTEiJ_G0015619.1 mouse_genomes_project 1 87656834 87704964 + MGP_CASTEiJ_P0020427 Inpp5d protein_coding protein_coding MGP_CASTEiJ_T0020428.1 MGP_CASTEiJ_G0015619.1 mouse_genomes_project 1 87751476 87754314 + Inpp5d protein_coding processed_transcript MGP_CASTEiJ_T0005639.1 MGP_CASTEiJ_G0004741.1 mouse_genomes_project 1 75677340 75679434 - Gm29065 lincRNA lincRNA MGP_CASTEiJ_T0002662.1 MGP_CASTEiJ_G0002544.1 mouse_genomes_project 1 15076797 15104224 - Gm28154 antisense antisense MGP_CASTEiJ_T0019754.1 MGP_CASTEiJ_G0015500.1 mouse_genomes_project 1 73910680 73928440 - MGP_CASTEiJ_P0019754 protein_coding unknown_likely_coding MGP_CASTEiJ_T0019755.1 MGP_CASTEiJ_G0015500.1 mouse_genomes_project 1 73910685 73928623 - protein_coding retained_intron MGP_CASTEiJ_T0019756.1 MGP_CASTEiJ_G0015500.1 mouse_genomes_project 1 73910685 73920024 - protein_coding retained_intron MGP_CASTEiJ_T0019757.1 MGP_CASTEiJ_G0015500.1 mouse_genomes_project 1 73913632 73915559 - MGP_CASTEiJ_P0019757 protein_coding protein_coding MGP_CASTEiJ_T0019758.1 MGP_CASTEiJ_G0015500.1 mouse_genomes_project 1 73917916 73928487 - protein_coding processed_transcript MGP_CASTEiJ_T0019759.1 MGP_CASTEiJ_G0015500.1 mouse_genomes_project 1 73918264 73929902 - MGP_CASTEiJ_P0019759 protein_coding protein_coding MGP_CASTEiJ_T0019760.1 MGP_CASTEiJ_G0015500.1 mouse_genomes_project 1 73918281 73928392 - MGP_CASTEiJ_P0019760 protein_coding protein_coding MGP_CASTEiJ_T0022888.1 MGP_CASTEiJ_G0016133.1 mouse_genomes_project 1 176165965 176173761 + MGP_CASTEiJ_P0022888 Igsf9 protein_coding protein_coding MGP_CASTEiJ_T0022889.1 MGP_CASTEiJ_G0016133.1 mouse_genomes_project 1 176166375 176175808 + MGP_CASTEiJ_P0022889 Igsf9 protein_coding protein_coding MGP_CASTEiJ_T0022890.1 MGP_CASTEiJ_G0016133.1 mouse_genomes_project 1 176166382 176173798 + Igsf9 protein_coding processed_transcript MGP_CASTEiJ_T0022891.1 MGP_CASTEiJ_G0016133.1 mouse_genomes_project 1 176166391 176183056 + MGP_CASTEiJ_P0022891 Igsf9 protein_coding protein_coding MGP_CASTEiJ_T0022892.1 MGP_CASTEiJ_G0016133.1 mouse_genomes_project 1 176166396 176173981 + Igsf9 protein_coding retained_intron MGP_CASTEiJ_T0022893.1 MGP_CASTEiJ_G0016133.1 mouse_genomes_project 1 176166396 176175212 + Igsf9 protein_coding retained_intron MGP_CASTEiJ_T0022894.1 MGP_CASTEiJ_G0016133.1 mouse_genomes_project 1 176166407 176183056 + MGP_CASTEiJ_P0022894 Igsf9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022895.1 MGP_CASTEiJ_G0016133.1 mouse_genomes_project 1 176166490 176183057 + MGP_CASTEiJ_P0022895 Igsf9 protein_coding protein_coding MGP_CASTEiJ_T0022896.1 MGP_CASTEiJ_G0016133.1 mouse_genomes_project 1 176175253 176176147 + Igsf9 protein_coding retained_intron MGP_CASTEiJ_T0022897.1 MGP_CASTEiJ_G0016133.1 mouse_genomes_project 1 176176130 176179031 + MGP_CASTEiJ_P0022897 Igsf9 protein_coding protein_coding MGP_CASTEiJ_T0022898.1 MGP_CASTEiJ_G0016133.1 mouse_genomes_project 1 176178101 176179892 + Igsf9 protein_coding retained_intron MGP_CASTEiJ_T0022899.1 MGP_CASTEiJ_G0016133.1 mouse_genomes_project 1 176178128 176179918 + Igsf9 protein_coding retained_intron MGP_CASTEiJ_T0022900.1 MGP_CASTEiJ_G0016133.1 mouse_genomes_project 1 176178923 176180380 + Igsf9 protein_coding retained_intron MGP_CASTEiJ_T0022901.1 MGP_CASTEiJ_G0016133.1 mouse_genomes_project 1 176181949 176182771 + Igsf9 protein_coding retained_intron MGP_CASTEiJ_T0021923.1 MGP_CASTEiJ_G0015936.1 mouse_genomes_project 1 155474837 155484032 + MGP_CASTEiJ_P0021923 Arpc5 protein_coding protein_coding MGP_CASTEiJ_T0021924.1 MGP_CASTEiJ_G0015936.1 mouse_genomes_project 1 155474837 155484032 + MGP_CASTEiJ_P0021924 Arpc5 protein_coding protein_coding MGP_CASTEiJ_T0021925.1 MGP_CASTEiJ_G0015936.1 mouse_genomes_project 1 155476768 155482676 + Arpc5 protein_coding retained_intron MGP_CASTEiJ_T0009250.1 MGP_CASTEiJ_G0007438.1 mouse_genomes_project 1 62285069 62285148 + Gm24557 miRNA miRNA MGP_CASTEiJ_T0000654.1 MGP_CASTEiJ_G0000598.1 mouse_genomes_project 1 158767302 158768045 - TEC TEC MGP_CASTEiJ_T0005835.1 MGP_CASTEiJ_G0004903.1 mouse_genomes_project 1 180414877 180514439 - lincRNA lincRNA MGP_CASTEiJ_T0016354.1 MGP_CASTEiJ_G0014440.1 mouse_genomes_project 1 176224817 176238749 - 4933439K11Rik processed_transcript lincRNA MGP_CASTEiJ_T0016355.1 MGP_CASTEiJ_G0014440.1 mouse_genomes_project 1 176228314 176238886 - 4933439K11Rik processed_transcript lincRNA MGP_CASTEiJ_T0016356.1 MGP_CASTEiJ_G0014440.1 mouse_genomes_project 1 176237335 176246179 - 4933439K11Rik processed_transcript antisense MGP_CASTEiJ_T0023648.1 MGP_CASTEiJ_G0016308.1 mouse_genomes_project 1 198353250 198377268 - MGP_CASTEiJ_P0023648 Camk1g protein_coding protein_coding MGP_CASTEiJ_T0023649.1 MGP_CASTEiJ_G0016308.1 mouse_genomes_project 1 198353250 198377195 - MGP_CASTEiJ_P0023649 Camk1g protein_coding protein_coding MGP_CASTEiJ_T0023650.1 MGP_CASTEiJ_G0016308.1 mouse_genomes_project 1 198355678 198366726 - MGP_CASTEiJ_P0023650 Camk1g protein_coding protein_coding MGP_CASTEiJ_T0023651.1 MGP_CASTEiJ_G0016308.1 mouse_genomes_project 1 198361720 198377215 - Camk1g protein_coding retained_intron MGP_CASTEiJ_T0011859.1 MGP_CASTEiJ_G0010022.1 mouse_genomes_project 1 112960484 112961328 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021090.1 MGP_CASTEiJ_G0015767.1 mouse_genomes_project 1 126988264 127035256 - MGP_CASTEiJ_P0021090 Lypd1 protein_coding protein_coding MGP_CASTEiJ_T0021091.1 MGP_CASTEiJ_G0015767.1 mouse_genomes_project 1 126992939 127034429 - MGP_CASTEiJ_P0021091 Lypd1 protein_coding protein_coding MGP_CASTEiJ_T0021092.1 MGP_CASTEiJ_G0015767.1 mouse_genomes_project 1 126992973 127035970 - MGP_CASTEiJ_P0021092 Lypd1 protein_coding protein_coding MGP_CASTEiJ_T0021093.1 MGP_CASTEiJ_G0015767.1 mouse_genomes_project 1 126993756 127033957 - MGP_CASTEiJ_P0021093 Lypd1 protein_coding protein_coding MGP_CASTEiJ_T0021094.1 MGP_CASTEiJ_G0015767.1 mouse_genomes_project 1 126994174 127036143 - MGP_CASTEiJ_P0021094 Lypd1 protein_coding protein_coding MGP_CASTEiJ_T0011557.1 MGP_CASTEiJ_G0009720.1 mouse_genomes_project 1 2542760 2543726 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101953.1 MGP_CASTEiJ_G0038678.1 mouse_genomes_project 1 178326397 178327497 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0023218.1 MGP_CASTEiJ_G0016223.1 mouse_genomes_project 1 185334545 185359129 - MGP_CASTEiJ_P0023218 Ephx1 protein_coding protein_coding MGP_CASTEiJ_T0023219.1 MGP_CASTEiJ_G0016223.1 mouse_genomes_project 1 185348402 185380181 - MGP_CASTEiJ_P0023219 Ephx1 protein_coding protein_coding MGP_CASTEiJ_T0023220.1 MGP_CASTEiJ_G0016223.1 mouse_genomes_project 1 185348402 185380181 - MGP_CASTEiJ_P0023220 Ephx1 protein_coding protein_coding MGP_CASTEiJ_T0023221.1 MGP_CASTEiJ_G0016223.1 mouse_genomes_project 1 185359107 185383637 - MGP_CASTEiJ_P0023221 Ephx1 protein_coding protein_coding MGP_CASTEiJ_T0021460.1 MGP_CASTEiJ_G0015844.1 mouse_genomes_project 1 135463467 135474662 - MGP_CASTEiJ_P0021460 Prelp protein_coding protein_coding MGP_CASTEiJ_T0021461.1 MGP_CASTEiJ_G0015844.1 mouse_genomes_project 1 135465911 135474659 - Prelp protein_coding processed_transcript MGP_CASTEiJ_T0002741.1 MGP_CASTEiJ_G0002602.1 mouse_genomes_project 1 82340098 82342832 - antisense antisense MGP_CASTEiJ_T0020126.1 MGP_CASTEiJ_G0015560.1 mouse_genomes_project 1 79581956 79587352 + MGP_CASTEiJ_P0020126 Mrpl44 protein_coding protein_coding MGP_CASTEiJ_T0020127.1 MGP_CASTEiJ_G0015560.1 mouse_genomes_project 1 79582054 79584484 + Mrpl44 protein_coding retained_intron MGP_CASTEiJ_T0000745.1 MGP_CASTEiJ_G0000687.1 mouse_genomes_project 1 191005842 191006953 + TEC TEC MGP_CASTEiJ_T0019595.1 MGP_CASTEiJ_G0015466.1 mouse_genomes_project 1 65694685 65921970 + MGP_CASTEiJ_P0019595 Unc80 protein_coding protein_coding MGP_CASTEiJ_T0019596.1 MGP_CASTEiJ_G0015466.1 mouse_genomes_project 1 65694732 65735612 + MGP_CASTEiJ_P0019596 Unc80 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019597.1 MGP_CASTEiJ_G0015466.1 mouse_genomes_project 1 65694748 65713310 + Unc80 protein_coding retained_intron MGP_CASTEiJ_T0019598.1 MGP_CASTEiJ_G0015466.1 mouse_genomes_project 1 65694765 65921254 + MGP_CASTEiJ_P0019598 Unc80 protein_coding unknown_likely_coding MGP_CASTEiJ_T0019599.1 MGP_CASTEiJ_G0015466.1 mouse_genomes_project 1 65894933 65895510 + Unc80 protein_coding retained_intron MGP_CASTEiJ_T0019600.1 MGP_CASTEiJ_G0015466.1 mouse_genomes_project 1 65900765 65918748 + MGP_CASTEiJ_P0019600 Unc80 protein_coding protein_coding MGP_CASTEiJ_T0019650.1 MGP_CASTEiJ_G0015476.1 mouse_genomes_project 1 70159717 70318728 + MGP_CASTEiJ_P0019650 Vwc2l protein_coding protein_coding MGP_CASTEiJ_T0019651.1 MGP_CASTEiJ_G0015476.1 mouse_genomes_project 1 70159754 70166404 + Vwc2l protein_coding retained_intron MGP_CASTEiJ_T0019652.1 MGP_CASTEiJ_G0015476.1 mouse_genomes_project 1 70159904 70318713 + MGP_CASTEiJ_P0019652 Vwc2l protein_coding protein_coding MGP_CASTEiJ_T0019653.1 MGP_CASTEiJ_G0015476.1 mouse_genomes_project 1 70159925 70315823 + MGP_CASTEiJ_P0019653 Vwc2l protein_coding protein_coding MGP_CASTEiJ_T0011785.1 MGP_CASTEiJ_G0009948.1 mouse_genomes_project 1 78590158 78591887 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019016.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50883413 50954616 - MGP_CASTEiJ_P0019016 Gls protein_coding protein_coding MGP_CASTEiJ_T0019017.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50885920 50953686 - MGP_CASTEiJ_P0019017 Gls protein_coding protein_coding MGP_CASTEiJ_T0019018.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50886107 50911731 - MGP_CASTEiJ_P0019018 Gls protein_coding protein_coding MGP_CASTEiJ_T0019019.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50886243 50888964 - Gls protein_coding retained_intron MGP_CASTEiJ_T0019020.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50886261 50889134 - Gls protein_coding retained_intron MGP_CASTEiJ_T0019021.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50888435 50911732 - Gls protein_coding retained_intron MGP_CASTEiJ_T0019022.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50903798 50954625 - MGP_CASTEiJ_P0019022 Gls protein_coding protein_coding MGP_CASTEiJ_T0019023.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50904980 50919545 - Gls protein_coding retained_intron MGP_CASTEiJ_T0019024.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50904980 50932737 - MGP_CASTEiJ_P0019024 Gls protein_coding protein_coding MGP_CASTEiJ_T0019025.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50907381 50911731 - MGP_CASTEiJ_P0019025 Gls protein_coding protein_coding MGP_CASTEiJ_T0019026.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50909157 50916409 - Gls protein_coding retained_intron MGP_CASTEiJ_T0019027.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50912021 50936953 - Gls protein_coding processed_transcript MGP_CASTEiJ_T0019028.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50915512 50919437 - Gls protein_coding retained_intron MGP_CASTEiJ_T0019029.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50923250 50936953 - Gls protein_coding retained_intron MGP_CASTEiJ_T0019030.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50924259 50935892 - Gls protein_coding retained_intron MGP_CASTEiJ_T0019031.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50926375 50937302 - Gls protein_coding retained_intron MGP_CASTEiJ_T0019032.1 MGP_CASTEiJ_G0015359.1 mouse_genomes_project 1 50935876 50954192 - Gls protein_coding processed_transcript MGP_CASTEiJ_T0009290.1 MGP_CASTEiJ_G0007478.1 mouse_genomes_project 1 139832945 139833024 + Mir181b-1 miRNA miRNA MGP_CASTEiJ_T0005816.1 MGP_CASTEiJ_G0004886.1 mouse_genomes_project 1 168377872 168381954 - 4930568G15Rik lincRNA lincRNA MGP_CASTEiJ_T0005817.1 MGP_CASTEiJ_G0004886.1 mouse_genomes_project 1 168380451 168404493 - 4930568G15Rik lincRNA lincRNA MGP_CASTEiJ_T0011864.1 MGP_CASTEiJ_G0010027.1 mouse_genomes_project 1 114457670 114458207 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022361.1 MGP_CASTEiJ_G0016011.1 mouse_genomes_project 1 166075395 166109792 - MGP_CASTEiJ_P0022361 Fmo1 protein_coding protein_coding MGP_CASTEiJ_T0022362.1 MGP_CASTEiJ_G0016011.1 mouse_genomes_project 1 166075601 166076309 - Fmo1 protein_coding processed_transcript MGP_CASTEiJ_T0022363.1 MGP_CASTEiJ_G0016011.1 mouse_genomes_project 1 166075885 166081866 - Fmo1 protein_coding processed_transcript MGP_CASTEiJ_T0022364.1 MGP_CASTEiJ_G0016011.1 mouse_genomes_project 1 166078856 166081866 - Fmo1 protein_coding retained_intron MGP_CASTEiJ_T0022365.1 MGP_CASTEiJ_G0016011.1 mouse_genomes_project 1 166080998 166101108 - MGP_CASTEiJ_P0022365 Fmo1 protein_coding protein_coding MGP_CASTEiJ_T0022366.1 MGP_CASTEiJ_G0016011.1 mouse_genomes_project 1 166083463 166100966 - MGP_CASTEiJ_P0022366 Fmo1 protein_coding protein_coding MGP_CASTEiJ_T0022367.1 MGP_CASTEiJ_G0016011.1 mouse_genomes_project 1 166083489 166100860 - MGP_CASTEiJ_P0022367 Fmo1 protein_coding protein_coding MGP_CASTEiJ_T0020887.1 MGP_CASTEiJ_G0015721.1 mouse_genomes_project 1 107328648 107371998 - MGP_CASTEiJ_P0020887 Kdsr protein_coding protein_coding MGP_CASTEiJ_T0020888.1 MGP_CASTEiJ_G0015721.1 mouse_genomes_project 1 107354013 107371970 - Kdsr protein_coding retained_intron MGP_CASTEiJ_T0020889.1 MGP_CASTEiJ_G0015721.1 mouse_genomes_project 1 107369372 107371954 - Kdsr protein_coding retained_intron MGP_CASTEiJ_T0022677.1 MGP_CASTEiJ_G0016088.1 mouse_genomes_project 1 174685016 174695407 + MGP_CASTEiJ_P0022677 Mpz protein_coding protein_coding MGP_CASTEiJ_T0022678.1 MGP_CASTEiJ_G0016088.1 mouse_genomes_project 1 174689778 174694786 + MGP_CASTEiJ_P0022678 Mpz protein_coding protein_coding MGP_CASTEiJ_T0022679.1 MGP_CASTEiJ_G0016088.1 mouse_genomes_project 1 174693872 174694509 + Mpz protein_coding processed_transcript MGP_CASTEiJ_T0022680.1 MGP_CASTEiJ_G0016088.1 mouse_genomes_project 1 174693981 174694524 + Mpz protein_coding processed_transcript MGP_CASTEiJ_T0005768.1 MGP_CASTEiJ_G0004849.1 mouse_genomes_project 1 140749424 140754469 - lincRNA lincRNA MGP_CASTEiJ_T0000337.1 MGP_CASTEiJ_G0000286.1 mouse_genomes_project 1 7386785 7387710 - TEC TEC MGP_CASTEiJ_T0017994.1 MGP_CASTEiJ_G0015161.1 mouse_genomes_project 1 1727538 1733023 - MGP_CASTEiJ_P0017994 Sox17 protein_coding protein_coding MGP_CASTEiJ_T0017995.1 MGP_CASTEiJ_G0015161.1 mouse_genomes_project 1 1727857 1733367 - MGP_CASTEiJ_P0017995 Sox17 protein_coding protein_coding MGP_CASTEiJ_T0017996.1 MGP_CASTEiJ_G0015161.1 mouse_genomes_project 1 1727997 1733964 - MGP_CASTEiJ_P0017996 Sox17 protein_coding protein_coding MGP_CASTEiJ_T0017997.1 MGP_CASTEiJ_G0015161.1 mouse_genomes_project 1 1728319 1732973 - MGP_CASTEiJ_P0017997 Sox17 protein_coding protein_coding MGP_CASTEiJ_T0017998.1 MGP_CASTEiJ_G0015161.1 mouse_genomes_project 1 1729063 1730211 - Sox17 protein_coding retained_intron MGP_CASTEiJ_T0017999.1 MGP_CASTEiJ_G0015161.1 mouse_genomes_project 1 1729064 1732940 - MGP_CASTEiJ_P0017999 Sox17 protein_coding protein_coding MGP_CASTEiJ_T0018000.1 MGP_CASTEiJ_G0015161.1 mouse_genomes_project 1 1729071 1730342 - MGP_CASTEiJ_P0018000 Sox17 protein_coding protein_coding MGP_CASTEiJ_T0018001.1 MGP_CASTEiJ_G0015161.1 mouse_genomes_project 1 1729073 1733006 - MGP_CASTEiJ_P0018001 Sox17 protein_coding protein_coding MGP_CASTEiJ_T0002895.1 MGP_CASTEiJ_G0002722.1 mouse_genomes_project 1 197008098 197014602 - antisense antisense MGP_CASTEiJ_T0098427.1 MGP_CASTEiJ_G0035358.1 mouse_genomes_project 1 82571468 82571566 + n-R5s213 rRNA rRNA MGP_CASTEiJ_T0021291.1 MGP_CASTEiJ_G0015811.1 mouse_genomes_project 1 133316378 133346678 + MGP_CASTEiJ_P0021291 Nucks1 protein_coding protein_coding MGP_CASTEiJ_T0021292.1 MGP_CASTEiJ_G0015811.1 mouse_genomes_project 1 133316400 133350319 + MGP_CASTEiJ_P0021292 Nucks1 protein_coding protein_coding MGP_CASTEiJ_T0021293.1 MGP_CASTEiJ_G0015811.1 mouse_genomes_project 1 133343162 133344071 + Nucks1 protein_coding retained_intron MGP_CASTEiJ_T0010918.1 MGP_CASTEiJ_G0009106.1 mouse_genomes_project 1 62302301 62302479 + Gm27390 misc_RNA misc_RNA MGP_CASTEiJ_T0019336.1 MGP_CASTEiJ_G0015418.1 mouse_genomes_project 1 58405496 58409885 + MGP_CASTEiJ_P0019336 Fzd7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0005856.1 MGP_CASTEiJ_G0004918.1 mouse_genomes_project 1 187916619 187917002 + Gm37986 lincRNA lincRNA MGP_CASTEiJ_T0011695.1 MGP_CASTEiJ_G0009858.1 mouse_genomes_project 1 47755135 47756150 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005788.1 MGP_CASTEiJ_G0004865.1 mouse_genomes_project 1 157842905 157891390 - Gm29282 lincRNA lincRNA MGP_CASTEiJ_T0011719.1 MGP_CASTEiJ_G0009882.1 mouse_genomes_project 1 53932613 53932888 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098791.1 MGP_CASTEiJ_G0035721.1 mouse_genomes_project 1 82692558 82693583 + Gm28941 sense_intronic sense_intronic MGP_CASTEiJ_T0022148.1 MGP_CASTEiJ_G0015977.1 mouse_genomes_project 1 160058221 160334607 - MGP_CASTEiJ_P0022148 Rasal2 protein_coding protein_coding MGP_CASTEiJ_T0022149.1 MGP_CASTEiJ_G0015977.1 mouse_genomes_project 1 160058226 160108186 - MGP_CASTEiJ_P0022149 Rasal2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022150.1 MGP_CASTEiJ_G0015977.1 mouse_genomes_project 1 160063544 160333946 - MGP_CASTEiJ_P0022150 Rasal2 protein_coding protein_coding MGP_CASTEiJ_T0022151.1 MGP_CASTEiJ_G0015977.1 mouse_genomes_project 1 160104943 160180920 - MGP_CASTEiJ_P0022151 Rasal2 protein_coding protein_coding MGP_CASTEiJ_T0022152.1 MGP_CASTEiJ_G0015977.1 mouse_genomes_project 1 160105136 160194359 - MGP_CASTEiJ_P0022152 Rasal2 protein_coding protein_coding MGP_CASTEiJ_T0022153.1 MGP_CASTEiJ_G0015977.1 mouse_genomes_project 1 160108077 160110420 - Rasal2 protein_coding processed_transcript MGP_CASTEiJ_T0022154.1 MGP_CASTEiJ_G0015977.1 mouse_genomes_project 1 160108077 160166582 - MGP_CASTEiJ_P0022154 Rasal2 protein_coding protein_coding MGP_CASTEiJ_T0022155.1 MGP_CASTEiJ_G0015977.1 mouse_genomes_project 1 160224249 160334607 - Rasal2 protein_coding retained_intron MGP_CASTEiJ_T0005830.1 MGP_CASTEiJ_G0004898.1 mouse_genomes_project 1 174486271 174492110 + Gm10522 lincRNA lincRNA MGP_CASTEiJ_T0002654.1 MGP_CASTEiJ_G0002539.1 mouse_genomes_project 1 10791023 10805752 + Gm29570 antisense antisense MGP_CASTEiJ_T0000326.1 MGP_CASTEiJ_G0000275.1 mouse_genomes_project 1 2204608 2206697 - TEC TEC MGP_CASTEiJ_T0023086.1 MGP_CASTEiJ_G0016199.1 mouse_genomes_project 1 182718501 182908876 + Kif26b protein_coding retained_intron MGP_CASTEiJ_T0023087.1 MGP_CASTEiJ_G0016199.1 mouse_genomes_project 1 182718501 183150259 + MGP_CASTEiJ_P0023087 Kif26b protein_coding protein_coding MGP_CASTEiJ_T0023088.1 MGP_CASTEiJ_G0016199.1 mouse_genomes_project 1 183000591 183143923 + MGP_CASTEiJ_P0023088 Kif26b protein_coding protein_coding MGP_CASTEiJ_T0010932.1 MGP_CASTEiJ_G0009120.1 mouse_genomes_project 1 195405596 195405909 - Gm23153 misc_RNA misc_RNA MGP_CASTEiJ_T0019110.1 MGP_CASTEiJ_G0015377.1 mouse_genomes_project 1 53117108 53156126 - MGP_CASTEiJ_P0019110 Gtf3c3 protein_coding protein_coding MGP_CASTEiJ_T0019111.1 MGP_CASTEiJ_G0015377.1 mouse_genomes_project 1 53118317 53156149 - MGP_CASTEiJ_P0019111 Gtf3c3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0019112.1 MGP_CASTEiJ_G0015377.1 mouse_genomes_project 1 53133742 53138737 - Gtf3c3 protein_coding retained_intron MGP_CASTEiJ_T0019113.1 MGP_CASTEiJ_G0015377.1 mouse_genomes_project 1 53141958 53143560 - Gtf3c3 protein_coding retained_intron MGP_CASTEiJ_T0011607.1 MGP_CASTEiJ_G0009770.1 mouse_genomes_project 1 16883815 16884287 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000334.1 MGP_CASTEiJ_G0000283.1 mouse_genomes_project 1 6467207 6468254 - TEC TEC MGP_CASTEiJ_T0098780.1 MGP_CASTEiJ_G0035711.1 mouse_genomes_project 1 35097697 35100656 - Gm38115 sense_intronic sense_intronic MGP_CASTEiJ_T0000355.1 MGP_CASTEiJ_G0000304.1 mouse_genomes_project 1 12211721 12216057 + TEC TEC MGP_CASTEiJ_T0021426.1 MGP_CASTEiJ_G0015837.1 mouse_genomes_project 1 135128196 135135580 - MGP_CASTEiJ_P0021426 Snrpe protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021427.1 MGP_CASTEiJ_G0015837.1 mouse_genomes_project 1 135128321 135135750 - MGP_CASTEiJ_P0021427 Snrpe protein_coding protein_coding MGP_CASTEiJ_T0021428.1 MGP_CASTEiJ_G0015837.1 mouse_genomes_project 1 135130368 135135782 - MGP_CASTEiJ_P0021428 Snrpe protein_coding protein_coding MGP_CASTEiJ_T0021429.1 MGP_CASTEiJ_G0015837.1 mouse_genomes_project 1 135130804 135135458 - MGP_CASTEiJ_P0021429 Snrpe protein_coding protein_coding MGP_CASTEiJ_T0021430.1 MGP_CASTEiJ_G0015837.1 mouse_genomes_project 1 135134396 135135748 - MGP_CASTEiJ_P0021430 Snrpe protein_coding protein_coding MGP_CASTEiJ_T0011907.1 MGP_CASTEiJ_G0010070.1 mouse_genomes_project 1 138242996 138243368 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000428.1 MGP_CASTEiJ_G0000374.1 mouse_genomes_project 1 42222210 42223507 + TEC TEC MGP_CASTEiJ_T0000666.1 MGP_CASTEiJ_G0000610.1 mouse_genomes_project 1 161356331 161358986 + TEC TEC MGP_CASTEiJ_T0101921.1 MGP_CASTEiJ_G0038646.1 mouse_genomes_project 1 88269711 88270496 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0005646.1 MGP_CASTEiJ_G0004747.1 mouse_genomes_project 1 78386176 78405089 - 5730419F03Rik lincRNA lincRNA MGP_CASTEiJ_T0000446.1 MGP_CASTEiJ_G0000392.1 mouse_genomes_project 1 58581771 58583571 - TEC TEC MGP_CASTEiJ_T0005614.1 MGP_CASTEiJ_G0004725.1 mouse_genomes_project 1 67297759 67299281 + Gm15671 lincRNA lincRNA MGP_CASTEiJ_T0018239.1 MGP_CASTEiJ_G0015199.1 mouse_genomes_project 1 12301179 12349375 - MGP_CASTEiJ_P0018239 Trpa1 protein_coding protein_coding MGP_CASTEiJ_T0098807.1 MGP_CASTEiJ_G0035737.1 mouse_genomes_project 1 191833006 191836506 - Gm15509 sense_intronic sense_intronic MGP_CASTEiJ_T0098422.1 MGP_CASTEiJ_G0035353.1 mouse_genomes_project 1 24745789 24745908 - n-R5s209 rRNA rRNA MGP_CASTEiJ_T0019735.1 MGP_CASTEiJ_G0015495.1 mouse_genomes_project 1 73803230 73806087 - MGP_CASTEiJ_P0019735 Cxcr1 protein_coding protein_coding MGP_CASTEiJ_T0019736.1 MGP_CASTEiJ_G0015495.1 mouse_genomes_project 1 73803230 73804677 - MGP_CASTEiJ_P0019736 Cxcr1 protein_coding protein_coding MGP_CASTEiJ_T0020429.1 MGP_CASTEiJ_G0015620.1 mouse_genomes_project 1 87794656 87811871 + MGP_CASTEiJ_P0020429 Atg16l1 protein_coding protein_coding MGP_CASTEiJ_T0020430.1 MGP_CASTEiJ_G0015620.1 mouse_genomes_project 1 87794799 87836611 + MGP_CASTEiJ_P0020430 Atg16l1 protein_coding protein_coding MGP_CASTEiJ_T0020431.1 MGP_CASTEiJ_G0015620.1 mouse_genomes_project 1 87794842 87808599 + Atg16l1 protein_coding retained_intron MGP_CASTEiJ_T0020432.1 MGP_CASTEiJ_G0015620.1 mouse_genomes_project 1 87794862 87830370 + Atg16l1 protein_coding retained_intron MGP_CASTEiJ_T0020433.1 MGP_CASTEiJ_G0015620.1 mouse_genomes_project 1 87794862 87836605 + MGP_CASTEiJ_P0020433 Atg16l1 protein_coding protein_coding MGP_CASTEiJ_T0020434.1 MGP_CASTEiJ_G0015620.1 mouse_genomes_project 1 87794872 87836608 + MGP_CASTEiJ_P0020434 Atg16l1 protein_coding protein_coding MGP_CASTEiJ_T0020435.1 MGP_CASTEiJ_G0015620.1 mouse_genomes_project 1 87794874 87836608 + Atg16l1 protein_coding retained_intron MGP_CASTEiJ_T0020436.1 MGP_CASTEiJ_G0015620.1 mouse_genomes_project 1 87794879 87807181 + Atg16l1 protein_coding retained_intron MGP_CASTEiJ_T0020437.1 MGP_CASTEiJ_G0015620.1 mouse_genomes_project 1 87806098 87815320 + Atg16l1 protein_coding retained_intron MGP_CASTEiJ_T0020438.1 MGP_CASTEiJ_G0015620.1 mouse_genomes_project 1 87815744 87819172 + Atg16l1 protein_coding retained_intron MGP_CASTEiJ_T0020439.1 MGP_CASTEiJ_G0015620.1 mouse_genomes_project 1 87818669 87832746 + Atg16l1 protein_coding retained_intron MGP_CASTEiJ_T0000523.1 MGP_CASTEiJ_G0000469.1 mouse_genomes_project 1 87947535 87950518 + TEC TEC MGP_CASTEiJ_T0021230.1 MGP_CASTEiJ_G0015797.1 mouse_genomes_project 1 132439121 132490781 - MGP_CASTEiJ_P0021230 Mapkapk2 protein_coding protein_coding MGP_CASTEiJ_T0021231.1 MGP_CASTEiJ_G0015797.1 mouse_genomes_project 1 132442306 132463393 - MGP_CASTEiJ_P0021231 Mapkapk2 protein_coding protein_coding MGP_CASTEiJ_T0020343.1 MGP_CASTEiJ_G0015603.1 mouse_genomes_project 1 86644288 86649711 - MGP_CASTEiJ_P0020343 Nppc protein_coding protein_coding MGP_CASTEiJ_T0012031.1 MGP_CASTEiJ_G0010194.1 mouse_genomes_project 1 197810882 197811336 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022160.1 MGP_CASTEiJ_G0015979.1 mouse_genomes_project 1 160436128 160503307 + MGP_CASTEiJ_P0022160 Sec16b protein_coding protein_coding MGP_CASTEiJ_T0022161.1 MGP_CASTEiJ_G0015979.1 mouse_genomes_project 1 160436210 160503310 + MGP_CASTEiJ_P0022161 Sec16b protein_coding protein_coding MGP_CASTEiJ_T0022162.1 MGP_CASTEiJ_G0015979.1 mouse_genomes_project 1 160457677 160503307 + MGP_CASTEiJ_P0022162 Sec16b protein_coding protein_coding MGP_CASTEiJ_T0022163.1 MGP_CASTEiJ_G0015979.1 mouse_genomes_project 1 160464793 160494924 + MGP_CASTEiJ_P0022163 Sec16b protein_coding protein_coding MGP_CASTEiJ_T0022164.1 MGP_CASTEiJ_G0015979.1 mouse_genomes_project 1 160469743 160476965 + Sec16b protein_coding retained_intron MGP_CASTEiJ_T0019429.1 MGP_CASTEiJ_G0015431.1 mouse_genomes_project 1 59741835 59782716 + Cd28 protein_coding processed_transcript MGP_CASTEiJ_T0019430.1 MGP_CASTEiJ_G0015431.1 mouse_genomes_project 1 59766199 59792912 + MGP_CASTEiJ_P0019430 Cd28 protein_coding protein_coding MGP_CASTEiJ_T0019431.1 MGP_CASTEiJ_G0015431.1 mouse_genomes_project 1 59766243 59784177 + Cd28 protein_coding retained_intron MGP_CASTEiJ_T0023472.1 MGP_CASTEiJ_G0016276.1 mouse_genomes_project 1 195638838 195871822 - MGP_CASTEiJ_P0023472 Rps6kc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023473.1 MGP_CASTEiJ_G0016276.1 mouse_genomes_project 1 195720146 195782214 - MGP_CASTEiJ_P0023473 Rps6kc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023474.1 MGP_CASTEiJ_G0016276.1 mouse_genomes_project 1 195720146 195871845 - MGP_CASTEiJ_P0023474 Rps6kc1 protein_coding protein_coding MGP_CASTEiJ_T0023475.1 MGP_CASTEiJ_G0016276.1 mouse_genomes_project 1 195720146 195871813 - MGP_CASTEiJ_P0023475 Rps6kc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023476.1 MGP_CASTEiJ_G0016276.1 mouse_genomes_project 1 195744588 195795729 - Rps6kc1 protein_coding retained_intron MGP_CASTEiJ_T0023477.1 MGP_CASTEiJ_G0016276.1 mouse_genomes_project 1 195746844 195871809 - Rps6kc1 protein_coding retained_intron MGP_CASTEiJ_T0023478.1 MGP_CASTEiJ_G0016276.1 mouse_genomes_project 1 195757085 195758661 - Rps6kc1 protein_coding retained_intron MGP_CASTEiJ_T0023479.1 MGP_CASTEiJ_G0016276.1 mouse_genomes_project 1 195826359 195859888 - Rps6kc1 protein_coding processed_transcript MGP_CASTEiJ_T0023480.1 MGP_CASTEiJ_G0016276.1 mouse_genomes_project 1 195839021 195871844 - MGP_CASTEiJ_P0023480 Rps6kc1 protein_coding protein_coding MGP_CASTEiJ_T0022970.1 MGP_CASTEiJ_G0016168.1 mouse_genomes_project 1 178094313 178095359 + MGP_CASTEiJ_P0022970 Olfr420 protein_coding protein_coding MGP_CASTEiJ_T0022408.1 MGP_CASTEiJ_G0016023.1 mouse_genomes_project 1 167310958 167321546 + MGP_CASTEiJ_P0022408 Sele protein_coding protein_coding MGP_CASTEiJ_T0005622.1 MGP_CASTEiJ_G0004730.1 mouse_genomes_project 1 71449705 71502665 - 4933417E11Rik lincRNA lincRNA MGP_CASTEiJ_T0021195.1 MGP_CASTEiJ_G0015786.1 mouse_genomes_project 1 132033544 132079520 - MGP_CASTEiJ_P0021195 Gm29427 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000538.1 MGP_CASTEiJ_G0000484.1 mouse_genomes_project 1 96903558 96905852 + TEC TEC MGP_CASTEiJ_T0000486.1 MGP_CASTEiJ_G0000432.1 mouse_genomes_project 1 75102818 75105012 - TEC TEC MGP_CASTEiJ_T0000551.1 MGP_CASTEiJ_G0000497.1 mouse_genomes_project 1 111716151 111719546 - TEC TEC MGP_CASTEiJ_T0012020.1 MGP_CASTEiJ_G0010183.1 mouse_genomes_project 1 191714555 191715153 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022974.1 MGP_CASTEiJ_G0016170.1 mouse_genomes_project 1 178189730 178190818 - MGP_CASTEiJ_P0022974 Olfr419 protein_coding protein_coding MGP_CASTEiJ_T0005879.1 MGP_CASTEiJ_G0004935.1 mouse_genomes_project 1 191181211 191233505 - A730004F24Rik lincRNA lincRNA MGP_CASTEiJ_T0005880.1 MGP_CASTEiJ_G0004935.1 mouse_genomes_project 1 191181255 191233714 - A730004F24Rik lincRNA lincRNA MGP_CASTEiJ_T0011597.1 MGP_CASTEiJ_G0009760.1 mouse_genomes_project 1 14222902 14223334 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002814.1 MGP_CASTEiJ_G0002659.1 mouse_genomes_project 1 158086273 158088146 + Gm37622 antisense antisense MGP_CASTEiJ_T0011837.1 MGP_CASTEiJ_G0010000.1 mouse_genomes_project 1 105033383 105034451 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018317.1 MGP_CASTEiJ_G0015220.1 mouse_genomes_project 1 16766229 16798504 + MGP_CASTEiJ_P0018317 Tfap2b protein_coding protein_coding MGP_CASTEiJ_T0018318.1 MGP_CASTEiJ_G0015220.1 mouse_genomes_project 1 16766291 16798011 + MGP_CASTEiJ_P0018318 Tfap2b protein_coding protein_coding MGP_CASTEiJ_T0018319.1 MGP_CASTEiJ_G0015220.1 mouse_genomes_project 1 16769414 16794555 + MGP_CASTEiJ_P0018319 Tfap2b protein_coding protein_coding MGP_CASTEiJ_T0018320.1 MGP_CASTEiJ_G0015220.1 mouse_genomes_project 1 16769662 16773373 + Tfap2b protein_coding retained_intron MGP_CASTEiJ_T0018321.1 MGP_CASTEiJ_G0015220.1 mouse_genomes_project 1 16772872 16778171 + Tfap2b protein_coding retained_intron MGP_CASTEiJ_T0005782.1 MGP_CASTEiJ_G0004861.1 mouse_genomes_project 1 156836744 156843641 - Gm28286 lincRNA lincRNA MGP_CASTEiJ_T0019660.1 MGP_CASTEiJ_G0015479.1 mouse_genomes_project 1 71010507 71036187 + MGP_CASTEiJ_P0019660 Atic protein_coding protein_coding MGP_CASTEiJ_T0019661.1 MGP_CASTEiJ_G0015479.1 mouse_genomes_project 1 71010536 71013314 + Atic protein_coding retained_intron MGP_CASTEiJ_T0019662.1 MGP_CASTEiJ_G0015479.1 mouse_genomes_project 1 71010536 71016709 + Atic protein_coding retained_intron MGP_CASTEiJ_T0019663.1 MGP_CASTEiJ_G0015479.1 mouse_genomes_project 1 71010536 71026858 + Atic protein_coding retained_intron MGP_CASTEiJ_T0019664.1 MGP_CASTEiJ_G0015479.1 mouse_genomes_project 1 71010570 71016709 + Atic protein_coding retained_intron MGP_CASTEiJ_T0019665.1 MGP_CASTEiJ_G0015479.1 mouse_genomes_project 1 71022401 71026455 + Atic protein_coding retained_intron MGP_CASTEiJ_T0022570.1 MGP_CASTEiJ_G0016057.1 mouse_genomes_project 1 170668707 170691531 + MGP_CASTEiJ_P0022570 Tmco1 protein_coding protein_coding MGP_CASTEiJ_T0022571.1 MGP_CASTEiJ_G0016057.1 mouse_genomes_project 1 170668999 170691531 + MGP_CASTEiJ_P0022571 Tmco1 protein_coding protein_coding MGP_CASTEiJ_T0022572.1 MGP_CASTEiJ_G0016057.1 mouse_genomes_project 1 170669065 170694687 + MGP_CASTEiJ_P0022572 Tmco1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022573.1 MGP_CASTEiJ_G0016057.1 mouse_genomes_project 1 170674459 170691346 + MGP_CASTEiJ_P0022573 Tmco1 protein_coding protein_coding MGP_CASTEiJ_T0011709.1 MGP_CASTEiJ_G0009872.1 mouse_genomes_project 1 51227701 51228703 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000380.1 MGP_CASTEiJ_G0000327.1 mouse_genomes_project 1 23411807 23415800 - TEC TEC MGP_CASTEiJ_T0019865.1 MGP_CASTEiJ_G0015520.1 mouse_genomes_project 1 74570510 74607717 - MGP_CASTEiJ_P0019865 Ccdc108 protein_coding protein_coding MGP_CASTEiJ_T0019866.1 MGP_CASTEiJ_G0015520.1 mouse_genomes_project 1 74592469 74607712 - Ccdc108 protein_coding retained_intron MGP_CASTEiJ_T0019867.1 MGP_CASTEiJ_G0015520.1 mouse_genomes_project 1 74593558 74607710 - Ccdc108 protein_coding retained_intron MGP_CASTEiJ_T0011617.1 MGP_CASTEiJ_G0009780.1 mouse_genomes_project 1 20678119 20680615 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021212.1 MGP_CASTEiJ_G0015791.1 mouse_genomes_project 1 132198060 132223634 + MGP_CASTEiJ_P0021212 Pigr protein_coding protein_coding MGP_CASTEiJ_T0021213.1 MGP_CASTEiJ_G0015791.1 mouse_genomes_project 1 132198264 132216075 + MGP_CASTEiJ_P0021213 Pigr protein_coding protein_coding MGP_CASTEiJ_T0021214.1 MGP_CASTEiJ_G0015791.1 mouse_genomes_project 1 132200408 132216043 + MGP_CASTEiJ_P0021214 Pigr protein_coding protein_coding MGP_CASTEiJ_T0002707.1 MGP_CASTEiJ_G0002580.1 mouse_genomes_project 1 57886630 57932783 + Gm29018 antisense antisense MGP_CASTEiJ_T0002708.1 MGP_CASTEiJ_G0002580.1 mouse_genomes_project 1 57907756 57909611 + Gm29018 antisense antisense MGP_CASTEiJ_T0002719.1 MGP_CASTEiJ_G0002588.1 mouse_genomes_project 1 61800520 61803867 - Gm29083 antisense antisense MGP_CASTEiJ_T0000622.1 MGP_CASTEiJ_G0000566.1 mouse_genomes_project 1 140430335 140432744 - TEC TEC MGP_CASTEiJ_T0099114.1 MGP_CASTEiJ_G0036027.1 mouse_genomes_project 1 130146843 130146954 - Gm23056 snRNA snRNA MGP_CASTEiJ_T0101913.1 MGP_CASTEiJ_G0038638.1 mouse_genomes_project 1 69441294 69441382 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0012032.1 MGP_CASTEiJ_G0010195.1 mouse_genomes_project 1 197881641 197882120 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018194.1 MGP_CASTEiJ_G0015190.1 mouse_genomes_project 1 10060130 10235005 + MGP_CASTEiJ_P0018194 Sulf1 protein_coding protein_coding MGP_CASTEiJ_T0018195.1 MGP_CASTEiJ_G0015190.1 mouse_genomes_project 1 10060176 10234185 + MGP_CASTEiJ_P0018195 Sulf1 protein_coding protein_coding MGP_CASTEiJ_T0018196.1 MGP_CASTEiJ_G0015190.1 mouse_genomes_project 1 10060385 10226287 + MGP_CASTEiJ_P0018196 Sulf1 protein_coding protein_coding MGP_CASTEiJ_T0018197.1 MGP_CASTEiJ_G0015190.1 mouse_genomes_project 1 10088225 10195629 + Sulf1 protein_coding retained_intron MGP_CASTEiJ_T0018198.1 MGP_CASTEiJ_G0015190.1 mouse_genomes_project 1 10088295 10234191 + MGP_CASTEiJ_P0018198 Sulf1 protein_coding protein_coding MGP_CASTEiJ_T0018199.1 MGP_CASTEiJ_G0015190.1 mouse_genomes_project 1 10089229 10159282 + MGP_CASTEiJ_P0018199 Sulf1 protein_coding protein_coding MGP_CASTEiJ_T0018200.1 MGP_CASTEiJ_G0015190.1 mouse_genomes_project 1 10097812 10159372 + MGP_CASTEiJ_P0018200 Sulf1 protein_coding protein_coding MGP_CASTEiJ_T0018201.1 MGP_CASTEiJ_G0015190.1 mouse_genomes_project 1 10158173 10161551 + Sulf1 protein_coding retained_intron MGP_CASTEiJ_T0018202.1 MGP_CASTEiJ_G0015190.1 mouse_genomes_project 1 10208274 10212724 + Sulf1 protein_coding retained_intron MGP_CASTEiJ_T0018203.1 MGP_CASTEiJ_G0015190.1 mouse_genomes_project 1 10216578 10235005 + MGP_CASTEiJ_P0018203 Sulf1 protein_coding protein_coding MGP_CASTEiJ_T0019498.1 MGP_CASTEiJ_G0015445.1 mouse_genomes_project 1 62916535 62938018 + MGP_CASTEiJ_P0019498 Fastkd2 protein_coding protein_coding MGP_CASTEiJ_T0019499.1 MGP_CASTEiJ_G0015445.1 mouse_genomes_project 1 62916562 62922680 + Fastkd2 protein_coding retained_intron MGP_CASTEiJ_T0019500.1 MGP_CASTEiJ_G0015445.1 mouse_genomes_project 1 62916564 62935870 + Fastkd2 protein_coding retained_intron MGP_CASTEiJ_T0019501.1 MGP_CASTEiJ_G0015445.1 mouse_genomes_project 1 62922546 62931386 + Fastkd2 protein_coding processed_transcript MGP_CASTEiJ_T0019502.1 MGP_CASTEiJ_G0015445.1 mouse_genomes_project 1 62931349 62933606 + Fastkd2 protein_coding retained_intron MGP_CASTEiJ_T0019503.1 MGP_CASTEiJ_G0015445.1 mouse_genomes_project 1 62934553 62935797 + Fastkd2 protein_coding processed_transcript MGP_CASTEiJ_T0022598.1 MGP_CASTEiJ_G0016066.1 mouse_genomes_project 1 173173039 173179265 - MGP_CASTEiJ_P0022598 Rgs4 protein_coding protein_coding MGP_CASTEiJ_T0022599.1 MGP_CASTEiJ_G0016066.1 mouse_genomes_project 1 173173044 173179222 - MGP_CASTEiJ_P0022599 Rgs4 protein_coding protein_coding MGP_CASTEiJ_T0022600.1 MGP_CASTEiJ_G0016066.1 mouse_genomes_project 1 173175397 173179203 - Rgs4 protein_coding retained_intron MGP_CASTEiJ_T0000708.1 MGP_CASTEiJ_G0000652.1 mouse_genomes_project 1 180009811 180011462 - TEC TEC MGP_CASTEiJ_T0011664.1 MGP_CASTEiJ_G0009827.1 mouse_genomes_project 1 37922688 37923295 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000515.1 MGP_CASTEiJ_G0000461.1 mouse_genomes_project 1 86814724 86818630 + TEC TEC MGP_CASTEiJ_T0011831.1 MGP_CASTEiJ_G0009994.1 mouse_genomes_project 1 101873828 101874544 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011896.1 MGP_CASTEiJ_G0010059.1 mouse_genomes_project 1 126768775 126769404 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005537.1 MGP_CASTEiJ_G0004671.1 mouse_genomes_project 1 34482419 34483136 + 4930403P22Rik lincRNA lincRNA MGP_CASTEiJ_T0019963.1 MGP_CASTEiJ_G0015534.1 mouse_genomes_project 1 74862061 74873110 + MGP_CASTEiJ_P0019963 Dnajb2 protein_coding protein_coding MGP_CASTEiJ_T0019964.1 MGP_CASTEiJ_G0015534.1 mouse_genomes_project 1 74862121 74872226 + MGP_CASTEiJ_P0019964 Dnajb2 protein_coding protein_coding MGP_CASTEiJ_T0019965.1 MGP_CASTEiJ_G0015534.1 mouse_genomes_project 1 74862121 74872226 + MGP_CASTEiJ_P0019965 Dnajb2 protein_coding protein_coding MGP_CASTEiJ_T0019966.1 MGP_CASTEiJ_G0015534.1 mouse_genomes_project 1 74862125 74873114 + MGP_CASTEiJ_P0019966 Dnajb2 protein_coding protein_coding MGP_CASTEiJ_T0019967.1 MGP_CASTEiJ_G0015534.1 mouse_genomes_project 1 74862143 74873112 + MGP_CASTEiJ_P0019967 Dnajb2 protein_coding protein_coding MGP_CASTEiJ_T0019968.1 MGP_CASTEiJ_G0015534.1 mouse_genomes_project 1 74862169 74872477 + MGP_CASTEiJ_P0019968 Dnajb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019969.1 MGP_CASTEiJ_G0015534.1 mouse_genomes_project 1 74862212 74873112 + MGP_CASTEiJ_P0019969 Dnajb2 protein_coding protein_coding MGP_CASTEiJ_T0019970.1 MGP_CASTEiJ_G0015534.1 mouse_genomes_project 1 74862270 74866818 + MGP_CASTEiJ_P0019970 Dnajb2 protein_coding protein_coding MGP_CASTEiJ_T0019971.1 MGP_CASTEiJ_G0015534.1 mouse_genomes_project 1 74862428 74863359 + Dnajb2 protein_coding retained_intron MGP_CASTEiJ_T0019972.1 MGP_CASTEiJ_G0015534.1 mouse_genomes_project 1 74862731 74863202 + Dnajb2 protein_coding retained_intron MGP_CASTEiJ_T0019973.1 MGP_CASTEiJ_G0015534.1 mouse_genomes_project 1 74866405 74868394 + Dnajb2 protein_coding retained_intron MGP_CASTEiJ_T0019974.1 MGP_CASTEiJ_G0015534.1 mouse_genomes_project 1 74868881 74872349 + MGP_CASTEiJ_P0019974 Dnajb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011647.1 MGP_CASTEiJ_G0009810.1 mouse_genomes_project 1 32611875 32612350 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099132.1 MGP_CASTEiJ_G0036045.1 mouse_genomes_project 1 174249746 174249851 - Gm23523 snRNA snRNA MGP_CASTEiJ_T0000539.1 MGP_CASTEiJ_G0000485.1 mouse_genomes_project 1 98012480 98013667 - TEC TEC MGP_CASTEiJ_T0022931.1 MGP_CASTEiJ_G0016146.1 mouse_genomes_project 1 176932383 176933410 + MGP_CASTEiJ_P0022931 Olfr1404 protein_coding protein_coding MGP_CASTEiJ_T0023176.1 MGP_CASTEiJ_G0016213.1 mouse_genomes_project 1 184890528 184900768 + MGP_CASTEiJ_P0023176 Parp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023177.1 MGP_CASTEiJ_G0016213.1 mouse_genomes_project 1 184890533 184921655 + MGP_CASTEiJ_P0023177 Parp1 protein_coding protein_coding MGP_CASTEiJ_T0023178.1 MGP_CASTEiJ_G0016213.1 mouse_genomes_project 1 184890829 184899219 + MGP_CASTEiJ_P0023178 Parp1 protein_coding protein_coding MGP_CASTEiJ_T0023179.1 MGP_CASTEiJ_G0016213.1 mouse_genomes_project 1 184910816 184912256 + Parp1 protein_coding retained_intron MGP_CASTEiJ_T0023180.1 MGP_CASTEiJ_G0016213.1 mouse_genomes_project 1 184918622 184920597 + Parp1 protein_coding retained_intron MGP_CASTEiJ_T0023181.1 MGP_CASTEiJ_G0016213.1 mouse_genomes_project 1 184919238 184920507 + Parp1 protein_coding retained_intron MGP_CASTEiJ_T0023182.1 MGP_CASTEiJ_G0016213.1 mouse_genomes_project 1 184919390 184921653 + MGP_CASTEiJ_P0023182 Parp1 protein_coding protein_coding MGP_CASTEiJ_T0011763.1 MGP_CASTEiJ_G0009926.1 mouse_genomes_project 1 65255851 65256582 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022886.1 MGP_CASTEiJ_G0016131.1 mouse_genomes_project 1 176055991 176063497 + MGP_CASTEiJ_P0022886 Pigm protein_coding protein_coding MGP_CASTEiJ_T0000558.1 MGP_CASTEiJ_G0000504.1 mouse_genomes_project 1 122199409 122202468 + TEC TEC MGP_CASTEiJ_T0021406.1 MGP_CASTEiJ_G0015832.1 mouse_genomes_project 1 134813706 134834893 + MGP_CASTEiJ_P0021406 protein_coding protein_coding MGP_CASTEiJ_T0021407.1 MGP_CASTEiJ_G0015832.1 mouse_genomes_project 1 134813706 134834927 + MGP_CASTEiJ_P0021407 protein_coding protein_coding MGP_CASTEiJ_T0021412.1 MGP_CASTEiJ_G0015832.1 mouse_genomes_project 1 134829207 134834927 + MGP_CASTEiJ_P0021412 protein_coding protein_coding MGP_CASTEiJ_T0020890.1 MGP_CASTEiJ_G0015722.1 mouse_genomes_project 1 107376360 107408375 - MGP_CASTEiJ_P0020890 Vps4b protein_coding protein_coding MGP_CASTEiJ_T0020891.1 MGP_CASTEiJ_G0015722.1 mouse_genomes_project 1 107381718 107408436 - MGP_CASTEiJ_P0020891 Vps4b protein_coding protein_coding MGP_CASTEiJ_T0020892.1 MGP_CASTEiJ_G0015722.1 mouse_genomes_project 1 107389466 107394970 - Vps4b protein_coding retained_intron MGP_CASTEiJ_T0020893.1 MGP_CASTEiJ_G0015722.1 mouse_genomes_project 1 107391617 107392800 - Vps4b protein_coding retained_intron MGP_CASTEiJ_T0020894.1 MGP_CASTEiJ_G0015722.1 mouse_genomes_project 1 107397458 107401605 - Vps4b protein_coding processed_transcript MGP_CASTEiJ_T0020895.1 MGP_CASTEiJ_G0015722.1 mouse_genomes_project 1 107402755 107408285 - Vps4b protein_coding retained_intron MGP_CASTEiJ_T0002799.1 MGP_CASTEiJ_G0002647.1 mouse_genomes_project 1 137925188 137934153 + Gm26568 antisense antisense MGP_CASTEiJ_T0020305.1 MGP_CASTEiJ_G0015594.1 mouse_genomes_project 1 86064314 86097317 + MGP_CASTEiJ_P0020305 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000692.1 MGP_CASTEiJ_G0000636.1 mouse_genomes_project 1 168189601 168193128 - TEC TEC MGP_CASTEiJ_T0011718.1 MGP_CASTEiJ_G0009881.1 mouse_genomes_project 1 53899025 53900016 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023502.1 MGP_CASTEiJ_G0016281.1 mouse_genomes_project 1 196008316 196026456 - MGP_CASTEiJ_P0023502 Tatdn3 protein_coding protein_coding MGP_CASTEiJ_T0023503.1 MGP_CASTEiJ_G0016281.1 mouse_genomes_project 1 196008329 196026428 - MGP_CASTEiJ_P0023503 Tatdn3 protein_coding protein_coding MGP_CASTEiJ_T0023504.1 MGP_CASTEiJ_G0016281.1 mouse_genomes_project 1 196008333 196026428 - MGP_CASTEiJ_P0023504 Tatdn3 protein_coding protein_coding MGP_CASTEiJ_T0023505.1 MGP_CASTEiJ_G0016281.1 mouse_genomes_project 1 196008333 196026429 - MGP_CASTEiJ_P0023505 Tatdn3 protein_coding protein_coding MGP_CASTEiJ_T0023506.1 MGP_CASTEiJ_G0016281.1 mouse_genomes_project 1 196008336 196013080 - Tatdn3 protein_coding retained_intron MGP_CASTEiJ_T0023507.1 MGP_CASTEiJ_G0016281.1 mouse_genomes_project 1 196018614 196022540 - Tatdn3 protein_coding retained_intron MGP_CASTEiJ_T0023508.1 MGP_CASTEiJ_G0016281.1 mouse_genomes_project 1 196021599 196023081 - Tatdn3 protein_coding retained_intron MGP_CASTEiJ_T0023509.1 MGP_CASTEiJ_G0016281.1 mouse_genomes_project 1 196022474 196026428 - Tatdn3 protein_coding retained_intron MGP_CASTEiJ_T0023510.1 MGP_CASTEiJ_G0016281.1 mouse_genomes_project 1 196023572 196026428 - Tatdn3 protein_coding retained_intron MGP_CASTEiJ_T0022255.1 MGP_CASTEiJ_G0015993.1 mouse_genomes_project 1 164203367 164237148 - MGP_CASTEiJ_P0022255 Dars2 protein_coding protein_coding MGP_CASTEiJ_T0022256.1 MGP_CASTEiJ_G0015993.1 mouse_genomes_project 1 164203956 164237132 - Dars2 protein_coding retained_intron MGP_CASTEiJ_T0022257.1 MGP_CASTEiJ_G0015993.1 mouse_genomes_project 1 164204265 164209908 - Dars2 protein_coding processed_transcript MGP_CASTEiJ_T0022258.1 MGP_CASTEiJ_G0015993.1 mouse_genomes_project 1 164204271 164237146 - Dars2 protein_coding retained_intron MGP_CASTEiJ_T0022259.1 MGP_CASTEiJ_G0015993.1 mouse_genomes_project 1 164207948 164237097 - Dars2 protein_coding retained_intron MGP_CASTEiJ_T0022260.1 MGP_CASTEiJ_G0015993.1 mouse_genomes_project 1 164226573 164227604 - Dars2 protein_coding retained_intron MGP_CASTEiJ_T0022261.1 MGP_CASTEiJ_G0015993.1 mouse_genomes_project 1 164226932 164237120 - Dars2 protein_coding processed_transcript MGP_CASTEiJ_T0016350.1 MGP_CASTEiJ_G0014437.1 mouse_genomes_project 1 173384312 173385841 - Gm15852 processed_transcript processed_transcript MGP_CASTEiJ_T0011771.1 MGP_CASTEiJ_G0009934.1 mouse_genomes_project 1 68741611 68742362 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021615.1 MGP_CASTEiJ_G0015879.1 mouse_genomes_project 1 137517727 137533638 + MGP_CASTEiJ_P0021615 Tnnt2 protein_coding protein_coding MGP_CASTEiJ_T0021616.1 MGP_CASTEiJ_G0015879.1 mouse_genomes_project 1 137517759 137533638 + MGP_CASTEiJ_P0021616 Tnnt2 protein_coding protein_coding MGP_CASTEiJ_T0021617.1 MGP_CASTEiJ_G0015879.1 mouse_genomes_project 1 137517763 137521097 + Tnnt2 protein_coding retained_intron MGP_CASTEiJ_T0021618.1 MGP_CASTEiJ_G0015879.1 mouse_genomes_project 1 137517763 137526071 + Tnnt2 protein_coding retained_intron MGP_CASTEiJ_T0021619.1 MGP_CASTEiJ_G0015879.1 mouse_genomes_project 1 137517775 137529386 + MGP_CASTEiJ_P0021619 Tnnt2 protein_coding protein_coding MGP_CASTEiJ_T0021620.1 MGP_CASTEiJ_G0015879.1 mouse_genomes_project 1 137517783 137533638 + MGP_CASTEiJ_P0021620 Tnnt2 protein_coding protein_coding MGP_CASTEiJ_T0021621.1 MGP_CASTEiJ_G0015879.1 mouse_genomes_project 1 137517786 137533638 + MGP_CASTEiJ_P0021621 Tnnt2 protein_coding protein_coding MGP_CASTEiJ_T0021622.1 MGP_CASTEiJ_G0015879.1 mouse_genomes_project 1 137522069 137530791 + MGP_CASTEiJ_P0021622 Tnnt2 protein_coding protein_coding MGP_CASTEiJ_T0021623.1 MGP_CASTEiJ_G0015879.1 mouse_genomes_project 1 137522227 137533638 + MGP_CASTEiJ_P0021623 Tnnt2 protein_coding protein_coding MGP_CASTEiJ_T0021624.1 MGP_CASTEiJ_G0015879.1 mouse_genomes_project 1 137522245 137533638 + MGP_CASTEiJ_P0021624 Tnnt2 protein_coding protein_coding MGP_CASTEiJ_T0021625.1 MGP_CASTEiJ_G0015879.1 mouse_genomes_project 1 137522245 137533638 + MGP_CASTEiJ_P0021625 Tnnt2 protein_coding protein_coding MGP_CASTEiJ_T0021626.1 MGP_CASTEiJ_G0015879.1 mouse_genomes_project 1 137522245 137533638 + MGP_CASTEiJ_P0021626 Tnnt2 protein_coding protein_coding MGP_CASTEiJ_T0021627.1 MGP_CASTEiJ_G0015879.1 mouse_genomes_project 1 137522245 137533638 + MGP_CASTEiJ_P0021627 Tnnt2 protein_coding protein_coding MGP_CASTEiJ_T0021628.1 MGP_CASTEiJ_G0015879.1 mouse_genomes_project 1 137522245 137533638 + MGP_CASTEiJ_P0021628 Tnnt2 protein_coding protein_coding MGP_CASTEiJ_T0021629.1 MGP_CASTEiJ_G0015879.1 mouse_genomes_project 1 137530781 137531073 + Tnnt2 protein_coding retained_intron MGP_CASTEiJ_T0010923.1 MGP_CASTEiJ_G0009111.1 mouse_genomes_project 1 90022355 90022666 + Gm26037 misc_RNA misc_RNA MGP_CASTEiJ_T0023075.1 MGP_CASTEiJ_G0016196.1 mouse_genomes_project 1 182481892 182497804 - MGP_CASTEiJ_P0023075 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023076.1 MGP_CASTEiJ_G0016196.1 mouse_genomes_project 1 182481952 182489430 - MGP_CASTEiJ_P0023076 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023077.1 MGP_CASTEiJ_G0016196.1 mouse_genomes_project 1 182482438 182488215 - MGP_CASTEiJ_P0023077 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009324.1 MGP_CASTEiJ_G0007512.1 mouse_genomes_project 1 200107241 200107329 + Mir29c miRNA miRNA MGP_CASTEiJ_T0000461.1 MGP_CASTEiJ_G0000407.1 mouse_genomes_project 1 61899617 61902136 + TEC TEC MGP_CASTEiJ_T0020876.1 MGP_CASTEiJ_G0015718.1 mouse_genomes_project 1 106569776 106615095 + MGP_CASTEiJ_P0020876 Zcchc2 protein_coding protein_coding MGP_CASTEiJ_T0020877.1 MGP_CASTEiJ_G0015718.1 mouse_genomes_project 1 106570059 106615088 + MGP_CASTEiJ_P0020877 Zcchc2 protein_coding protein_coding MGP_CASTEiJ_T0020878.1 MGP_CASTEiJ_G0015718.1 mouse_genomes_project 1 106570119 106595998 + MGP_CASTEiJ_P0020878 Zcchc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020879.1 MGP_CASTEiJ_G0015718.1 mouse_genomes_project 1 106585127 106613471 + MGP_CASTEiJ_P0020879 Zcchc2 protein_coding protein_coding MGP_CASTEiJ_T0020880.1 MGP_CASTEiJ_G0015718.1 mouse_genomes_project 1 106585142 106608541 + MGP_CASTEiJ_P0020880 Zcchc2 protein_coding protein_coding MGP_CASTEiJ_T0020881.1 MGP_CASTEiJ_G0015718.1 mouse_genomes_project 1 106592773 106604297 + MGP_CASTEiJ_P0020881 Zcchc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000394.1 MGP_CASTEiJ_G0000341.1 mouse_genomes_project 1 30455962 30458603 + TEC TEC MGP_CASTEiJ_T0005809.1 MGP_CASTEiJ_G0004881.1 mouse_genomes_project 1 167933674 167942105 + lincRNA lincRNA MGP_CASTEiJ_T0011603.1 MGP_CASTEiJ_G0009766.1 mouse_genomes_project 1 15785884 15786873 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000773.1 MGP_CASTEiJ_G0000714.1 mouse_genomes_project 1 200295803 200298275 - TEC TEC MGP_CASTEiJ_T0021464.1 MGP_CASTEiJ_G0015846.1 mouse_genomes_project 1 135640066 135644026 - MGP_CASTEiJ_P0021464 Btg2 protein_coding protein_coding MGP_CASTEiJ_T0100264.1 MGP_CASTEiJ_G0037177.1 mouse_genomes_project 1 37833923 37834138 + Gm24826 snoRNA snoRNA MGP_CASTEiJ_T0000475.1 MGP_CASTEiJ_G0000421.1 mouse_genomes_project 1 68005573 68007946 - TEC TEC MGP_CASTEiJ_T0000596.1 MGP_CASTEiJ_G0000542.1 mouse_genomes_project 1 134412271 134414088 - TEC TEC MGP_CASTEiJ_T0018718.1 MGP_CASTEiJ_G0015299.1 mouse_genomes_project 1 36209123 36221245 - MGP_CASTEiJ_P0018718 Txndc9 protein_coding protein_coding MGP_CASTEiJ_T0018719.1 MGP_CASTEiJ_G0015299.1 mouse_genomes_project 1 36211328 36221823 - MGP_CASTEiJ_P0018719 Txndc9 protein_coding protein_coding MGP_CASTEiJ_T0018720.1 MGP_CASTEiJ_G0015299.1 mouse_genomes_project 1 36211328 36221173 - MGP_CASTEiJ_P0018720 Txndc9 protein_coding protein_coding MGP_CASTEiJ_T0018721.1 MGP_CASTEiJ_G0015299.1 mouse_genomes_project 1 36211330 36221154 - Txndc9 protein_coding retained_intron MGP_CASTEiJ_T0018722.1 MGP_CASTEiJ_G0015299.1 mouse_genomes_project 1 36211574 36219776 - MGP_CASTEiJ_P0018722 Txndc9 protein_coding protein_coding MGP_CASTEiJ_T0018723.1 MGP_CASTEiJ_G0015299.1 mouse_genomes_project 1 36211577 36221546 - MGP_CASTEiJ_P0018723 Txndc9 protein_coding protein_coding MGP_CASTEiJ_T0018724.1 MGP_CASTEiJ_G0015299.1 mouse_genomes_project 1 36214192 36220588 - MGP_CASTEiJ_P0018724 Txndc9 protein_coding protein_coding MGP_CASTEiJ_T0018725.1 MGP_CASTEiJ_G0015299.1 mouse_genomes_project 1 36219845 36221192 - Txndc9 protein_coding retained_intron MGP_CASTEiJ_T0019071.1 MGP_CASTEiJ_G0015367.1 mouse_genomes_project 1 51894777 51930641 - MGP_CASTEiJ_P0019071 1700019A02Rik protein_coding protein_coding MGP_CASTEiJ_T0019072.1 MGP_CASTEiJ_G0015367.1 mouse_genomes_project 1 51894800 51930613 - MGP_CASTEiJ_P0019072 1700019A02Rik protein_coding protein_coding MGP_CASTEiJ_T0002756.1 MGP_CASTEiJ_G0002617.1 mouse_genomes_project 1 93808731 93821940 + Gm28535 antisense antisense MGP_CASTEiJ_T0018274.1 MGP_CASTEiJ_G0015208.1 mouse_genomes_project 1 13990325 14081798 - MGP_CASTEiJ_P0018274 Ube2w protein_coding protein_coding MGP_CASTEiJ_T0018275.1 MGP_CASTEiJ_G0015208.1 mouse_genomes_project 1 14017871 14040798 - Ube2w protein_coding processed_transcript MGP_CASTEiJ_T0018276.1 MGP_CASTEiJ_G0015208.1 mouse_genomes_project 1 14023272 14081975 - MGP_CASTEiJ_P0018276 Ube2w protein_coding protein_coding MGP_CASTEiJ_T0018277.1 MGP_CASTEiJ_G0015208.1 mouse_genomes_project 1 14037336 14081745 - MGP_CASTEiJ_P0018277 Ube2w protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018278.1 MGP_CASTEiJ_G0015208.1 mouse_genomes_project 1 14039560 14081770 - Ube2w protein_coding retained_intron MGP_CASTEiJ_T0018279.1 MGP_CASTEiJ_G0015208.1 mouse_genomes_project 1 14059878 14081770 - Ube2w protein_coding retained_intron MGP_CASTEiJ_T0011943.1 MGP_CASTEiJ_G0010106.1 mouse_genomes_project 1 153829863 153829980 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011639.1 MGP_CASTEiJ_G0009802.1 mouse_genomes_project 1 31249956 31251649 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010935.1 MGP_CASTEiJ_G0009123.1 mouse_genomes_project 1 199922864 199923158 + Gm23885 misc_RNA misc_RNA MGP_CASTEiJ_T0000511.1 MGP_CASTEiJ_G0000457.1 mouse_genomes_project 1 86051612 86054264 + TEC TEC MGP_CASTEiJ_T0011594.1 MGP_CASTEiJ_G0009757.1 mouse_genomes_project 1 13203025 13203125 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021405.1 MGP_CASTEiJ_G0015831.1 mouse_genomes_project 1 134813679 134828254 + MGP_CASTEiJ_P0021405 Golt1a protein_coding protein_coding MGP_CASTEiJ_T0021410.1 MGP_CASTEiJ_G0015831.1 mouse_genomes_project 1 134813769 134826275 + MGP_CASTEiJ_P0021410 Golt1a protein_coding protein_coding MGP_CASTEiJ_T0002776.1 MGP_CASTEiJ_G0002630.1 mouse_genomes_project 1 131831388 131921478 + antisense antisense MGP_CASTEiJ_T0022541.1 MGP_CASTEiJ_G0016050.1 mouse_genomes_project 1 169694026 169708448 + MGP_CASTEiJ_P0022541 Tada1 protein_coding protein_coding MGP_CASTEiJ_T0022542.1 MGP_CASTEiJ_G0016050.1 mouse_genomes_project 1 169694236 169703708 + Tada1 protein_coding retained_intron MGP_CASTEiJ_T0022543.1 MGP_CASTEiJ_G0016050.1 mouse_genomes_project 1 169694243 169699048 + Tada1 protein_coding retained_intron MGP_CASTEiJ_T0022544.1 MGP_CASTEiJ_G0016050.1 mouse_genomes_project 1 169694258 169697408 + MGP_CASTEiJ_P0022544 Tada1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0002753.1 MGP_CASTEiJ_G0002614.1 mouse_genomes_project 1 93314594 93323025 - Gm29480 antisense antisense MGP_CASTEiJ_T0021720.1 MGP_CASTEiJ_G0015898.1 mouse_genomes_project 1 140735901 140740821 - MGP_CASTEiJ_P0021720 2310009B15Rik protein_coding protein_coding MGP_CASTEiJ_T0021721.1 MGP_CASTEiJ_G0015898.1 mouse_genomes_project 1 140735902 140738319 - 2310009B15Rik protein_coding retained_intron MGP_CASTEiJ_T0021722.1 MGP_CASTEiJ_G0015898.1 mouse_genomes_project 1 140735951 140740816 - MGP_CASTEiJ_P0021722 2310009B15Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0005736.1 MGP_CASTEiJ_G0004822.1 mouse_genomes_project 1 128033943 128038226 - 4930599A14Rik lincRNA lincRNA MGP_CASTEiJ_T0005737.1 MGP_CASTEiJ_G0004822.1 mouse_genomes_project 1 128036437 128038252 - 4930599A14Rik lincRNA lincRNA MGP_CASTEiJ_T0099149.1 MGP_CASTEiJ_G0036062.1 mouse_genomes_project 1 196787987 196788102 - Gm26203 snRNA snRNA MGP_CASTEiJ_T0011754.1 MGP_CASTEiJ_G0009917.1 mouse_genomes_project 1 63015645 63016397 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005647.1 MGP_CASTEiJ_G0004748.1 mouse_genomes_project 1 78410223 78414879 + Gm29611 lincRNA lincRNA MGP_CASTEiJ_T0019794.1 MGP_CASTEiJ_G0015507.1 mouse_genomes_project 1 74195970 74220443 + MGP_CASTEiJ_P0019794 Plcd4 protein_coding protein_coding MGP_CASTEiJ_T0019795.1 MGP_CASTEiJ_G0015507.1 mouse_genomes_project 1 74195970 74220443 + MGP_CASTEiJ_P0019795 Plcd4 protein_coding protein_coding MGP_CASTEiJ_T0019796.1 MGP_CASTEiJ_G0015507.1 mouse_genomes_project 1 74195970 74220443 + MGP_CASTEiJ_P0019796 Plcd4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019797.1 MGP_CASTEiJ_G0015507.1 mouse_genomes_project 1 74195985 74213195 + Plcd4 protein_coding retained_intron MGP_CASTEiJ_T0019798.1 MGP_CASTEiJ_G0015507.1 mouse_genomes_project 1 74195985 74218622 + MGP_CASTEiJ_P0019798 Plcd4 protein_coding protein_coding MGP_CASTEiJ_T0019799.1 MGP_CASTEiJ_G0015507.1 mouse_genomes_project 1 74195985 74218622 + MGP_CASTEiJ_P0019799 Plcd4 protein_coding protein_coding MGP_CASTEiJ_T0019800.1 MGP_CASTEiJ_G0015507.1 mouse_genomes_project 1 74197453 74199365 + Plcd4 protein_coding retained_intron MGP_CASTEiJ_T0019801.1 MGP_CASTEiJ_G0015507.1 mouse_genomes_project 1 74197457 74218622 + MGP_CASTEiJ_P0019801 Plcd4 protein_coding protein_coding MGP_CASTEiJ_T0019802.1 MGP_CASTEiJ_G0015507.1 mouse_genomes_project 1 74197457 74218622 + MGP_CASTEiJ_P0019802 Plcd4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019803.1 MGP_CASTEiJ_G0015507.1 mouse_genomes_project 1 74213015 74217946 + Plcd4 protein_coding processed_transcript MGP_CASTEiJ_T0019804.1 MGP_CASTEiJ_G0015507.1 mouse_genomes_project 1 74217080 74218271 + Plcd4 protein_coding retained_intron MGP_CASTEiJ_T0020154.1 MGP_CASTEiJ_G0015566.1 mouse_genomes_project 1 80937046 81199693 + MGP_CASTEiJ_P0020154 Nyap2 protein_coding protein_coding MGP_CASTEiJ_T0020155.1 MGP_CASTEiJ_G0015566.1 mouse_genomes_project 1 80945089 81171578 + MGP_CASTEiJ_P0020155 Nyap2 protein_coding protein_coding MGP_CASTEiJ_T0020156.1 MGP_CASTEiJ_G0015566.1 mouse_genomes_project 1 80945089 81200855 + MGP_CASTEiJ_P0020156 Nyap2 protein_coding protein_coding MGP_CASTEiJ_T0020157.1 MGP_CASTEiJ_G0015566.1 mouse_genomes_project 1 80945089 81251092 + MGP_CASTEiJ_P0020157 Nyap2 protein_coding protein_coding MGP_CASTEiJ_T0020158.1 MGP_CASTEiJ_G0015566.1 mouse_genomes_project 1 80945089 81199668 + MGP_CASTEiJ_P0020158 Nyap2 protein_coding protein_coding MGP_CASTEiJ_T0011723.1 MGP_CASTEiJ_G0009886.1 mouse_genomes_project 1 54163230 54163578 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011917.1 MGP_CASTEiJ_G0010080.1 mouse_genomes_project 1 141020421 141021197 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009301.1 MGP_CASTEiJ_G0007489.1 mouse_genomes_project 1 165924961 165925024 - Gm27616 miRNA miRNA MGP_CASTEiJ_T0022963.1 MGP_CASTEiJ_G0016162.1 mouse_genomes_project 1 177972077 177973016 + MGP_CASTEiJ_P0022963 Olfr432 protein_coding protein_coding MGP_CASTEiJ_T0019133.1 MGP_CASTEiJ_G0015380.1 mouse_genomes_project 1 53739788 53787366 - MGP_CASTEiJ_P0019133 Sf3b1 protein_coding protein_coding MGP_CASTEiJ_T0019134.1 MGP_CASTEiJ_G0015380.1 mouse_genomes_project 1 53739792 53747168 - Sf3b1 protein_coding retained_intron MGP_CASTEiJ_T0019135.1 MGP_CASTEiJ_G0015380.1 mouse_genomes_project 1 53745005 53748649 - Sf3b1 protein_coding retained_intron MGP_CASTEiJ_T0019136.1 MGP_CASTEiJ_G0015380.1 mouse_genomes_project 1 53760912 53787349 - Sf3b1 protein_coding retained_intron MGP_CASTEiJ_T0019137.1 MGP_CASTEiJ_G0015380.1 mouse_genomes_project 1 53765466 53775223 - Sf3b1 protein_coding retained_intron MGP_CASTEiJ_T0019138.1 MGP_CASTEiJ_G0015380.1 mouse_genomes_project 1 53771557 53787279 - MGP_CASTEiJ_P0019138 Sf3b1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019139.1 MGP_CASTEiJ_G0015380.1 mouse_genomes_project 1 53775831 53787258 - Sf3b1 protein_coding processed_transcript MGP_CASTEiJ_T0019140.1 MGP_CASTEiJ_G0015380.1 mouse_genomes_project 1 53775961 53776941 - Sf3b1 protein_coding retained_intron MGP_CASTEiJ_T0011566.1 MGP_CASTEiJ_G0009729.1 mouse_genomes_project 1 4352021 4355108 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000328.1 MGP_CASTEiJ_G0000277.1 mouse_genomes_project 1 3094416 3096215 - TEC TEC MGP_CASTEiJ_T0002887.1 MGP_CASTEiJ_G0002719.1 mouse_genomes_project 1 196042409 196043270 - Gm38188 antisense antisense MGP_CASTEiJ_T0100295.1 MGP_CASTEiJ_G0037208.1 mouse_genomes_project 1 97356848 97356976 + Gm26078 snoRNA snoRNA MGP_CASTEiJ_T0009263.1 MGP_CASTEiJ_G0007451.1 mouse_genomes_project 1 77230479 77230595 - Mir6352 miRNA miRNA MGP_CASTEiJ_T0005710.1 MGP_CASTEiJ_G0004802.1 mouse_genomes_project 1 114781015 114848789 - 9330185C12Rik lincRNA lincRNA MGP_CASTEiJ_T0011576.1 MGP_CASTEiJ_G0009739.1 mouse_genomes_project 1 6527701 6528219 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010925.1 MGP_CASTEiJ_G0009113.1 mouse_genomes_project 1 105005465 105005795 + Gm23537 misc_RNA misc_RNA MGP_CASTEiJ_T0002646.1 MGP_CASTEiJ_G0002536.1 mouse_genomes_project 1 3495217 3500642 - 4732440D04Rik antisense antisense MGP_CASTEiJ_T0002647.1 MGP_CASTEiJ_G0002536.1 mouse_genomes_project 1 3498645 3499939 - 4732440D04Rik antisense antisense MGP_CASTEiJ_T0002648.1 MGP_CASTEiJ_G0002536.1 mouse_genomes_project 1 3499960 3500641 - 4732440D04Rik antisense antisense MGP_CASTEiJ_T0000368.1 MGP_CASTEiJ_G0000316.1 mouse_genomes_project 1 21740090 21740480 + TEC TEC MGP_CASTEiJ_T0000369.1 MGP_CASTEiJ_G0000316.1 mouse_genomes_project 1 21740092 21740480 + TEC TEC MGP_CASTEiJ_T0019685.1 MGP_CASTEiJ_G0015482.1 mouse_genomes_project 1 71772982 71799798 - MGP_CASTEiJ_P0019685 Pecr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019686.1 MGP_CASTEiJ_G0015482.1 mouse_genomes_project 1 71772987 71799852 - MGP_CASTEiJ_P0019686 Pecr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019687.1 MGP_CASTEiJ_G0015482.1 mouse_genomes_project 1 71772987 71799853 - MGP_CASTEiJ_P0019687 Pecr protein_coding protein_coding MGP_CASTEiJ_T0019688.1 MGP_CASTEiJ_G0015482.1 mouse_genomes_project 1 71781003 71799798 - MGP_CASTEiJ_P0019688 Pecr protein_coding protein_coding MGP_CASTEiJ_T0005506.1 MGP_CASTEiJ_G0004643.1 mouse_genomes_project 1 14569329 14574762 + Gm28783 lincRNA lincRNA MGP_CASTEiJ_T0000663.1 MGP_CASTEiJ_G0000607.1 mouse_genomes_project 1 159952409 159954746 + TEC TEC MGP_CASTEiJ_T0022650.1 MGP_CASTEiJ_G0016081.1 mouse_genomes_project 1 174417208 174422957 - MGP_CASTEiJ_P0022650 Fcrlb protein_coding protein_coding MGP_CASTEiJ_T0021768.1 MGP_CASTEiJ_G0015909.1 mouse_genomes_project 1 146066106 146098537 + Glrx2 protein_coding retained_intron MGP_CASTEiJ_T0021769.1 MGP_CASTEiJ_G0015909.1 mouse_genomes_project 1 146089311 146098539 + MGP_CASTEiJ_P0021769 Glrx2 protein_coding protein_coding MGP_CASTEiJ_T0021770.1 MGP_CASTEiJ_G0015909.1 mouse_genomes_project 1 146089841 146094510 + Glrx2 protein_coding processed_transcript MGP_CASTEiJ_T0021771.1 MGP_CASTEiJ_G0015909.1 mouse_genomes_project 1 146089841 146100945 + MGP_CASTEiJ_P0021771 Glrx2 protein_coding protein_coding MGP_CASTEiJ_T0021772.1 MGP_CASTEiJ_G0015909.1 mouse_genomes_project 1 146089850 146094876 + Glrx2 protein_coding retained_intron MGP_CASTEiJ_T0021773.1 MGP_CASTEiJ_G0015909.1 mouse_genomes_project 1 146089894 146094613 + Glrx2 protein_coding processed_transcript MGP_CASTEiJ_T0021774.1 MGP_CASTEiJ_G0015909.1 mouse_genomes_project 1 146089899 146098539 + MGP_CASTEiJ_P0021774 Glrx2 protein_coding protein_coding MGP_CASTEiJ_T0021775.1 MGP_CASTEiJ_G0015909.1 mouse_genomes_project 1 146089902 146097371 + MGP_CASTEiJ_P0021775 Glrx2 protein_coding protein_coding MGP_CASTEiJ_T0021776.1 MGP_CASTEiJ_G0015909.1 mouse_genomes_project 1 146089930 146099071 + MGP_CASTEiJ_P0021776 Glrx2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021777.1 MGP_CASTEiJ_G0015909.1 mouse_genomes_project 1 146090659 146102084 + MGP_CASTEiJ_P0021777 Glrx2 protein_coding protein_coding MGP_CASTEiJ_T0021778.1 MGP_CASTEiJ_G0015909.1 mouse_genomes_project 1 146095185 146097436 + Glrx2 protein_coding retained_intron MGP_CASTEiJ_T0021779.1 MGP_CASTEiJ_G0015909.1 mouse_genomes_project 1 146096761 146098449 + Glrx2 protein_coding retained_intron MGP_CASTEiJ_T0021780.1 MGP_CASTEiJ_G0015909.1 mouse_genomes_project 1 146097737 146098538 + Glrx2 protein_coding processed_transcript MGP_CASTEiJ_T0011911.1 MGP_CASTEiJ_G0010074.1 mouse_genomes_project 1 140260795 140260946 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018726.1 MGP_CASTEiJ_G0015300.1 mouse_genomes_project 1 36221939 36284709 + MGP_CASTEiJ_P0018726 Eif5b protein_coding protein_coding MGP_CASTEiJ_T0018727.1 MGP_CASTEiJ_G0015300.1 mouse_genomes_project 1 36222058 36281151 + Eif5b protein_coding retained_intron MGP_CASTEiJ_T0018728.1 MGP_CASTEiJ_G0015300.1 mouse_genomes_project 1 36269689 36273329 + Eif5b protein_coding retained_intron MGP_CASTEiJ_T0018729.1 MGP_CASTEiJ_G0015300.1 mouse_genomes_project 1 36270726 36274565 + Eif5b protein_coding processed_transcript MGP_CASTEiJ_T0018730.1 MGP_CASTEiJ_G0015300.1 mouse_genomes_project 1 36272522 36276692 + Eif5b protein_coding retained_intron MGP_CASTEiJ_T0020164.1 MGP_CASTEiJ_G0015570.1 mouse_genomes_project 1 82387038 82522462 - MGP_CASTEiJ_P0020164 Col4a4 protein_coding protein_coding MGP_CASTEiJ_T0020165.1 MGP_CASTEiJ_G0015570.1 mouse_genomes_project 1 82393008 82522367 - MGP_CASTEiJ_P0020165 Col4a4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020166.1 MGP_CASTEiJ_G0015570.1 mouse_genomes_project 1 82477322 82522405 - Col4a4 protein_coding retained_intron MGP_CASTEiJ_T0022601.1 MGP_CASTEiJ_G0016067.1 mouse_genomes_project 1 173378824 173386246 + MGP_CASTEiJ_P0022601 Ccdc190 protein_coding protein_coding MGP_CASTEiJ_T0022602.1 MGP_CASTEiJ_G0016067.1 mouse_genomes_project 1 173380107 173386006 + MGP_CASTEiJ_P0022602 Ccdc190 protein_coding protein_coding MGP_CASTEiJ_T0099071.1 MGP_CASTEiJ_G0035984.1 mouse_genomes_project 1 17997713 17997815 - Gm24162 snRNA snRNA MGP_CASTEiJ_T0009274.1 MGP_CASTEiJ_G0007462.1 mouse_genomes_project 1 93324650 93324716 + Mir149 miRNA miRNA MGP_CASTEiJ_T0005613.1 MGP_CASTEiJ_G0004724.1 mouse_genomes_project 1 67073907 67086396 + Gm15669 lincRNA lincRNA MGP_CASTEiJ_T0018091.1 MGP_CASTEiJ_G0015175.1 mouse_genomes_project 1 6830611 6832704 + MGP_CASTEiJ_P0018091 Rrs1 protein_coding protein_coding MGP_CASTEiJ_T0022743.1 MGP_CASTEiJ_G0016099.1 mouse_genomes_project 1 174832965 174839905 - MGP_CASTEiJ_P0022743 Ufc1 protein_coding protein_coding MGP_CASTEiJ_T0022744.1 MGP_CASTEiJ_G0016099.1 mouse_genomes_project 1 174832967 174834826 - Ufc1 protein_coding retained_intron MGP_CASTEiJ_T0022745.1 MGP_CASTEiJ_G0016099.1 mouse_genomes_project 1 174833096 174839822 - MGP_CASTEiJ_P0022745 Ufc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022746.1 MGP_CASTEiJ_G0016099.1 mouse_genomes_project 1 174833114 174839868 - MGP_CASTEiJ_P0022746 Ufc1 protein_coding protein_coding MGP_CASTEiJ_T0022747.1 MGP_CASTEiJ_G0016099.1 mouse_genomes_project 1 174833179 174839821 - Ufc1 protein_coding retained_intron MGP_CASTEiJ_T0011742.1 MGP_CASTEiJ_G0009905.1 mouse_genomes_project 1 59982718 59982954 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016293.1 MGP_CASTEiJ_G0014424.1 mouse_genomes_project 1 133382470 133435505 + Gm29103 processed_transcript processed_transcript MGP_CASTEiJ_T0011944.1 MGP_CASTEiJ_G0010107.1 mouse_genomes_project 1 154121143 154121964 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020806.1 MGP_CASTEiJ_G0015705.1 mouse_genomes_project 1 97410406 97469382 - MGP_CASTEiJ_P0020806 Slco4c1 protein_coding protein_coding MGP_CASTEiJ_T0002742.1 MGP_CASTEiJ_G0002603.1 mouse_genomes_project 1 85855388 85859465 - Gm28884 antisense antisense MGP_CASTEiJ_T0002795.1 MGP_CASTEiJ_G0002643.1 mouse_genomes_project 1 136791317 136792159 + Gm15445 antisense antisense MGP_CASTEiJ_T0002856.1 MGP_CASTEiJ_G0002693.1 mouse_genomes_project 1 180928100 180932796 - Gm15423 antisense antisense MGP_CASTEiJ_T0000676.1 MGP_CASTEiJ_G0000620.1 mouse_genomes_project 1 163738179 163740255 - TEC TEC MGP_CASTEiJ_T0009229.1 MGP_CASTEiJ_G0007417.1 mouse_genomes_project 1 21009165 21009249 + Mir30c-2 miRNA miRNA MGP_CASTEiJ_T0000335.1 MGP_CASTEiJ_G0000284.1 mouse_genomes_project 1 6555562 6558825 + TEC TEC MGP_CASTEiJ_T0022950.1 MGP_CASTEiJ_G0016152.1 mouse_genomes_project 1 177224765 177233961 - MGP_CASTEiJ_P0022950 Pydc3 protein_coding protein_coding MGP_CASTEiJ_T0002700.1 MGP_CASTEiJ_G0002574.1 mouse_genomes_project 1 49822908 49825839 - Gm28319 antisense antisense MGP_CASTEiJ_T0000643.1 MGP_CASTEiJ_G0000587.1 mouse_genomes_project 1 152849209 152851985 + TEC TEC MGP_CASTEiJ_T0011749.1 MGP_CASTEiJ_G0009912.1 mouse_genomes_project 1 61745771 61746865 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020701.1 MGP_CASTEiJ_G0015684.1 mouse_genomes_project 1 93647487 93657078 - MGP_CASTEiJ_P0020701 2310007B03Rik protein_coding protein_coding MGP_CASTEiJ_T0020702.1 MGP_CASTEiJ_G0015684.1 mouse_genomes_project 1 93647720 93657000 - MGP_CASTEiJ_P0020702 2310007B03Rik protein_coding protein_coding MGP_CASTEiJ_T0022170.1 MGP_CASTEiJ_G0015981.1 mouse_genomes_project 1 161341685 161689945 + MGP_CASTEiJ_P0022170 Astn1 protein_coding protein_coding MGP_CASTEiJ_T0022171.1 MGP_CASTEiJ_G0015981.1 mouse_genomes_project 1 161341716 161689947 + MGP_CASTEiJ_P0022171 Astn1 protein_coding protein_coding MGP_CASTEiJ_T0022172.1 MGP_CASTEiJ_G0015981.1 mouse_genomes_project 1 161341751 161609192 + MGP_CASTEiJ_P0022172 Astn1 protein_coding protein_coding MGP_CASTEiJ_T0022173.1 MGP_CASTEiJ_G0015981.1 mouse_genomes_project 1 161342944 161608692 + MGP_CASTEiJ_P0022173 Astn1 protein_coding protein_coding MGP_CASTEiJ_T0022174.1 MGP_CASTEiJ_G0015981.1 mouse_genomes_project 1 161342957 161677387 + MGP_CASTEiJ_P0022174 Astn1 protein_coding protein_coding MGP_CASTEiJ_T0022175.1 MGP_CASTEiJ_G0015981.1 mouse_genomes_project 1 161498323 161511496 + Astn1 protein_coding processed_transcript MGP_CASTEiJ_T0022176.1 MGP_CASTEiJ_G0015981.1 mouse_genomes_project 1 161545491 161595674 + MGP_CASTEiJ_P0022176 Astn1 protein_coding protein_coding MGP_CASTEiJ_T0022177.1 MGP_CASTEiJ_G0015981.1 mouse_genomes_project 1 161595424 161607862 + Astn1 protein_coding retained_intron MGP_CASTEiJ_T0022178.1 MGP_CASTEiJ_G0015981.1 mouse_genomes_project 1 161650160 161665389 + MGP_CASTEiJ_P0022178 Astn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022179.1 MGP_CASTEiJ_G0015981.1 mouse_genomes_project 1 161650308 161682388 + MGP_CASTEiJ_P0022179 Astn1 protein_coding protein_coding MGP_CASTEiJ_T0022180.1 MGP_CASTEiJ_G0015981.1 mouse_genomes_project 1 161676658 161686707 + Astn1 protein_coding processed_transcript MGP_CASTEiJ_T0000573.1 MGP_CASTEiJ_G0000519.1 mouse_genomes_project 1 127485511 127486551 - TEC TEC MGP_CASTEiJ_T0000725.1 MGP_CASTEiJ_G0000668.1 mouse_genomes_project 1 184421383 184424053 - TEC TEC MGP_CASTEiJ_T0000499.1 MGP_CASTEiJ_G0000445.1 mouse_genomes_project 1 81423609 81425613 - TEC TEC MGP_CASTEiJ_T0011984.1 MGP_CASTEiJ_G0010147.1 mouse_genomes_project 1 170110917 170111229 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000649.1 MGP_CASTEiJ_G0000593.1 mouse_genomes_project 1 156025258 156028597 - TEC TEC MGP_CASTEiJ_T0011547.1 MGP_CASTEiJ_G0009710.1 mouse_genomes_project 1 1491528 1493656 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023424.1 MGP_CASTEiJ_G0016268.1 mouse_genomes_project 1 192346370 192828866 + MGP_CASTEiJ_P0023424 Esrrg protein_coding protein_coding MGP_CASTEiJ_T0023425.1 MGP_CASTEiJ_G0016268.1 mouse_genomes_project 1 192346609 193012139 + MGP_CASTEiJ_P0023425 Esrrg protein_coding protein_coding MGP_CASTEiJ_T0023426.1 MGP_CASTEiJ_G0016268.1 mouse_genomes_project 1 192347284 192544147 + Esrrg protein_coding processed_transcript MGP_CASTEiJ_T0023427.1 MGP_CASTEiJ_G0016268.1 mouse_genomes_project 1 192778542 193012638 + MGP_CASTEiJ_P0023427 Esrrg protein_coding protein_coding MGP_CASTEiJ_T0023428.1 MGP_CASTEiJ_G0016268.1 mouse_genomes_project 1 192778583 193012637 + MGP_CASTEiJ_P0023428 Esrrg protein_coding protein_coding MGP_CASTEiJ_T0000731.1 MGP_CASTEiJ_G0000674.1 mouse_genomes_project 1 186109265 186113080 - TEC TEC MGP_CASTEiJ_T0020408.1 MGP_CASTEiJ_G0015617.1 mouse_genomes_project 1 87507855 87607356 - MGP_CASTEiJ_P0020408 Ngef protein_coding protein_coding MGP_CASTEiJ_T0020409.1 MGP_CASTEiJ_G0015617.1 mouse_genomes_project 1 87507855 87541154 - MGP_CASTEiJ_P0020409 Ngef protein_coding protein_coding MGP_CASTEiJ_T0020410.1 MGP_CASTEiJ_G0015617.1 mouse_genomes_project 1 87509705 87517020 - MGP_CASTEiJ_P0020410 Ngef protein_coding protein_coding MGP_CASTEiJ_T0020411.1 MGP_CASTEiJ_G0015617.1 mouse_genomes_project 1 87510747 87517060 - Ngef protein_coding retained_intron MGP_CASTEiJ_T0020412.1 MGP_CASTEiJ_G0015617.1 mouse_genomes_project 1 87511537 87541114 - MGP_CASTEiJ_P0020412 Ngef protein_coding unknown_likely_coding MGP_CASTEiJ_T0019613.1 MGP_CASTEiJ_G0015470.1 mouse_genomes_project 1 66182670 66194081 - MGP_CASTEiJ_P0019613 Myl1 protein_coding protein_coding MGP_CASTEiJ_T0019614.1 MGP_CASTEiJ_G0015470.1 mouse_genomes_project 1 66182670 66206428 - MGP_CASTEiJ_P0019614 Myl1 protein_coding protein_coding MGP_CASTEiJ_T0019615.1 MGP_CASTEiJ_G0015470.1 mouse_genomes_project 1 66182672 66193798 - MGP_CASTEiJ_P0019615 Myl1 protein_coding protein_coding MGP_CASTEiJ_T0019616.1 MGP_CASTEiJ_G0015470.1 mouse_genomes_project 1 66183396 66193794 - Myl1 protein_coding processed_transcript MGP_CASTEiJ_T0019617.1 MGP_CASTEiJ_G0015470.1 mouse_genomes_project 1 66184439 66193777 - MGP_CASTEiJ_P0019617 Myl1 protein_coding protein_coding MGP_CASTEiJ_T0019618.1 MGP_CASTEiJ_G0015470.1 mouse_genomes_project 1 66185034 66206668 - MGP_CASTEiJ_P0019618 Myl1 protein_coding protein_coding MGP_CASTEiJ_T0019619.1 MGP_CASTEiJ_G0015470.1 mouse_genomes_project 1 66188609 66193135 - Myl1 protein_coding retained_intron MGP_CASTEiJ_T0019620.1 MGP_CASTEiJ_G0015470.1 mouse_genomes_project 1 66205747 66206688 - Myl1 protein_coding retained_intron MGP_CASTEiJ_T0021601.1 MGP_CASTEiJ_G0015876.1 mouse_genomes_project 1 137446764 137449789 + MGP_CASTEiJ_P0021601 Phlda3 protein_coding protein_coding MGP_CASTEiJ_T0021602.1 MGP_CASTEiJ_G0015876.1 mouse_genomes_project 1 137447779 137449573 + Phlda3 protein_coding processed_transcript MGP_CASTEiJ_T0018172.1 MGP_CASTEiJ_G0015187.1 mouse_genomes_project 1 7671731 8079523 - MGP_CASTEiJ_P0018172 Cpa6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018173.1 MGP_CASTEiJ_G0015187.1 mouse_genomes_project 1 7671738 8079523 - MGP_CASTEiJ_P0018173 Cpa6 protein_coding protein_coding MGP_CASTEiJ_T0018174.1 MGP_CASTEiJ_G0015187.1 mouse_genomes_project 1 7807454 7814038 - Cpa6 protein_coding retained_intron MGP_CASTEiJ_T0018175.1 MGP_CASTEiJ_G0015187.1 mouse_genomes_project 1 7942649 8079483 - Cpa6 protein_coding processed_transcript MGP_CASTEiJ_T0019408.1 MGP_CASTEiJ_G0015429.1 mouse_genomes_project 1 59433586 59509365 + MGP_CASTEiJ_P0019408 Abi2 protein_coding protein_coding MGP_CASTEiJ_T0019409.1 MGP_CASTEiJ_G0015429.1 mouse_genomes_project 1 59433662 59509365 + MGP_CASTEiJ_P0019409 Abi2 protein_coding protein_coding MGP_CASTEiJ_T0019410.1 MGP_CASTEiJ_G0015429.1 mouse_genomes_project 1 59433662 59505292 + MGP_CASTEiJ_P0019410 Abi2 protein_coding protein_coding MGP_CASTEiJ_T0019411.1 MGP_CASTEiJ_G0015429.1 mouse_genomes_project 1 59433696 59463767 + MGP_CASTEiJ_P0019411 Abi2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0019412.1 MGP_CASTEiJ_G0015429.1 mouse_genomes_project 1 59433701 59507720 + MGP_CASTEiJ_P0019412 Abi2 protein_coding protein_coding MGP_CASTEiJ_T0019413.1 MGP_CASTEiJ_G0015429.1 mouse_genomes_project 1 59433748 59469802 + Abi2 protein_coding retained_intron MGP_CASTEiJ_T0019414.1 MGP_CASTEiJ_G0015429.1 mouse_genomes_project 1 59433762 59472330 + MGP_CASTEiJ_P0019414 Abi2 protein_coding protein_coding MGP_CASTEiJ_T0019415.1 MGP_CASTEiJ_G0015429.1 mouse_genomes_project 1 59433770 59505362 + MGP_CASTEiJ_P0019415 Abi2 protein_coding protein_coding MGP_CASTEiJ_T0019416.1 MGP_CASTEiJ_G0015429.1 mouse_genomes_project 1 59433775 59459520 + Abi2 protein_coding retained_intron MGP_CASTEiJ_T0019417.1 MGP_CASTEiJ_G0015429.1 mouse_genomes_project 1 59462114 59505962 + MGP_CASTEiJ_P0019417 Abi2 protein_coding protein_coding MGP_CASTEiJ_T0019418.1 MGP_CASTEiJ_G0015429.1 mouse_genomes_project 1 59462238 59505124 + MGP_CASTEiJ_P0019418 Abi2 protein_coding protein_coding MGP_CASTEiJ_T0019419.1 MGP_CASTEiJ_G0015429.1 mouse_genomes_project 1 59462243 59505287 + MGP_CASTEiJ_P0019419 Abi2 protein_coding protein_coding MGP_CASTEiJ_T0019420.1 MGP_CASTEiJ_G0015429.1 mouse_genomes_project 1 59463967 59505508 + MGP_CASTEiJ_P0019420 Abi2 protein_coding protein_coding MGP_CASTEiJ_T0021414.1 MGP_CASTEiJ_G0015834.1 mouse_genomes_project 1 134857279 134868431 + MGP_CASTEiJ_P0021414 Ren1 protein_coding protein_coding MGP_CASTEiJ_T0021415.1 MGP_CASTEiJ_G0015834.1 mouse_genomes_project 1 134858671 134861039 + MGP_CASTEiJ_P0021415 Ren1 protein_coding protein_coding MGP_CASTEiJ_T0009248.1 MGP_CASTEiJ_G0007436.1 mouse_genomes_project 1 59644652 59644758 - Gm23762 miRNA miRNA MGP_CASTEiJ_T0020142.1 MGP_CASTEiJ_G0015564.1 mouse_genomes_project 1 80193398 80194976 + MGP_CASTEiJ_P0020142 Gm7104 protein_coding protein_coding MGP_CASTEiJ_T0011835.1 MGP_CASTEiJ_G0009998.1 mouse_genomes_project 1 104814054 104814361 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020848.1 MGP_CASTEiJ_G0015714.1 mouse_genomes_project 1 105825736 105904988 - MGP_CASTEiJ_P0020848 Rnf152 protein_coding protein_coding MGP_CASTEiJ_T0020849.1 MGP_CASTEiJ_G0015714.1 mouse_genomes_project 1 105825736 105904948 - MGP_CASTEiJ_P0020849 Rnf152 protein_coding protein_coding MGP_CASTEiJ_T0000519.1 MGP_CASTEiJ_G0000465.1 mouse_genomes_project 1 86917128 86920226 + TEC TEC MGP_CASTEiJ_T0022429.1 MGP_CASTEiJ_G0016030.1 mouse_genomes_project 1 167583348 167724360 + MGP_CASTEiJ_P0022429 Nme7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022431.1 MGP_CASTEiJ_G0016030.1 mouse_genomes_project 1 167586908 167723938 + MGP_CASTEiJ_P0022431 Nme7 protein_coding protein_coding MGP_CASTEiJ_T0022432.1 MGP_CASTEiJ_G0016030.1 mouse_genomes_project 1 167586963 167631437 + Nme7 protein_coding processed_transcript MGP_CASTEiJ_T0022433.1 MGP_CASTEiJ_G0016030.1 mouse_genomes_project 1 167586984 167592363 + Nme7 protein_coding retained_intron MGP_CASTEiJ_T0022434.1 MGP_CASTEiJ_G0016030.1 mouse_genomes_project 1 167587311 167723932 + MGP_CASTEiJ_P0022434 Nme7 protein_coding protein_coding MGP_CASTEiJ_T0022435.1 MGP_CASTEiJ_G0016030.1 mouse_genomes_project 1 167587335 167615221 + Nme7 protein_coding retained_intron MGP_CASTEiJ_T0022436.1 MGP_CASTEiJ_G0016030.1 mouse_genomes_project 1 167592074 167630247 + MGP_CASTEiJ_P0022436 Nme7 protein_coding protein_coding MGP_CASTEiJ_T0022437.1 MGP_CASTEiJ_G0016030.1 mouse_genomes_project 1 167627285 167665794 + Nme7 protein_coding retained_intron MGP_CASTEiJ_T0022438.1 MGP_CASTEiJ_G0016030.1 mouse_genomes_project 1 167658261 167723930 + Nme7 protein_coding processed_transcript MGP_CASTEiJ_T0022439.1 MGP_CASTEiJ_G0016030.1 mouse_genomes_project 1 167658261 167723874 + Nme7 protein_coding processed_transcript MGP_CASTEiJ_T0100323.1 MGP_CASTEiJ_G0037236.1 mouse_genomes_project 1 164027221 164027342 - Gm24988 snoRNA snoRNA MGP_CASTEiJ_T0000530.1 MGP_CASTEiJ_G0000476.1 mouse_genomes_project 1 91256390 91257227 - TEC TEC MGP_CASTEiJ_T0000706.1 MGP_CASTEiJ_G0000650.1 mouse_genomes_project 1 179321881 179323705 - TEC TEC MGP_CASTEiJ_T0011781.1 MGP_CASTEiJ_G0009944.1 mouse_genomes_project 1 75288958 75289765 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018825.1 MGP_CASTEiJ_G0015321.1 mouse_genomes_project 1 38877003 38911438 + MGP_CASTEiJ_P0018825 Il18rap protein_coding protein_coding MGP_CASTEiJ_T0018826.1 MGP_CASTEiJ_G0015321.1 mouse_genomes_project 1 38877046 38898700 + Il18rap protein_coding retained_intron MGP_CASTEiJ_T0018827.1 MGP_CASTEiJ_G0015321.1 mouse_genomes_project 1 38877089 38886273 + Il18rap protein_coding retained_intron MGP_CASTEiJ_T0018828.1 MGP_CASTEiJ_G0015321.1 mouse_genomes_project 1 38900894 38906215 + Il18rap protein_coding retained_intron MGP_CASTEiJ_T0000541.1 MGP_CASTEiJ_G0000487.1 mouse_genomes_project 1 100335900 100338599 + TEC TEC MGP_CASTEiJ_T0011578.1 MGP_CASTEiJ_G0009741.1 mouse_genomes_project 1 6717001 6717637 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100271.1 MGP_CASTEiJ_G0037184.1 mouse_genomes_project 1 50644483 50644605 - Gm27607 snoRNA snoRNA MGP_CASTEiJ_T0021630.1 MGP_CASTEiJ_G0015880.1 mouse_genomes_project 1 137552301 137602601 - MGP_CASTEiJ_P0021630 Pkp1 protein_coding protein_coding MGP_CASTEiJ_T0021631.1 MGP_CASTEiJ_G0015880.1 mouse_genomes_project 1 137553855 137602514 - MGP_CASTEiJ_P0021631 Pkp1 protein_coding protein_coding MGP_CASTEiJ_T0021632.1 MGP_CASTEiJ_G0015880.1 mouse_genomes_project 1 137554301 137602536 - MGP_CASTEiJ_P0021632 Pkp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021633.1 MGP_CASTEiJ_G0015880.1 mouse_genomes_project 1 137558259 137559288 - Pkp1 protein_coding retained_intron MGP_CASTEiJ_T0011885.1 MGP_CASTEiJ_G0010048.1 mouse_genomes_project 1 122533654 122533837 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101718.1 MGP_CASTEiJ_G0038533.1 mouse_genomes_project 1 177207324 177210348 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0000702.1 MGP_CASTEiJ_G0000646.1 mouse_genomes_project 1 175330015 175331712 + TEC TEC MGP_CASTEiJ_T0000582.1 MGP_CASTEiJ_G0000528.1 mouse_genomes_project 1 130584270 130586767 + TEC TEC MGP_CASTEiJ_T0011755.1 MGP_CASTEiJ_G0009918.1 mouse_genomes_project 1 63334921 63335386 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000642.1 MGP_CASTEiJ_G0000586.1 mouse_genomes_project 1 151968985 151971540 - TEC TEC MGP_CASTEiJ_T0011643.1 MGP_CASTEiJ_G0009806.1 mouse_genomes_project 1 31658974 31659303 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000356.1 MGP_CASTEiJ_G0000305.1 mouse_genomes_project 1 12801657 12803198 + TEC TEC MGP_CASTEiJ_T0020353.1 MGP_CASTEiJ_G0015606.1 mouse_genomes_project 1 87106399 87110034 - MGP_CASTEiJ_P0020353 Alpi protein_coding protein_coding MGP_CASTEiJ_T0000317.1 MGP_CASTEiJ_G0000266.1 mouse_genomes_project 1 558203 560435 - TEC TEC MGP_CASTEiJ_T0000322.1 MGP_CASTEiJ_G0000271.1 mouse_genomes_project 1 964552 966938 + TEC TEC MGP_CASTEiJ_T0021561.1 MGP_CASTEiJ_G0015869.1 mouse_genomes_project 1 136914040 136936269 - MGP_CASTEiJ_P0021561 Rnpep protein_coding protein_coding MGP_CASTEiJ_T0021562.1 MGP_CASTEiJ_G0015869.1 mouse_genomes_project 1 136914040 136936269 - MGP_CASTEiJ_P0021562 Rnpep protein_coding protein_coding MGP_CASTEiJ_T0021563.1 MGP_CASTEiJ_G0015869.1 mouse_genomes_project 1 136916522 136918734 - Rnpep protein_coding retained_intron MGP_CASTEiJ_T0021564.1 MGP_CASTEiJ_G0015869.1 mouse_genomes_project 1 136918360 136922788 - Rnpep protein_coding processed_transcript MGP_CASTEiJ_T0021565.1 MGP_CASTEiJ_G0015869.1 mouse_genomes_project 1 136922699 136925785 - Rnpep protein_coding processed_transcript MGP_CASTEiJ_T0021566.1 MGP_CASTEiJ_G0015869.1 mouse_genomes_project 1 136922701 136924079 - Rnpep protein_coding retained_intron MGP_CASTEiJ_T0021567.1 MGP_CASTEiJ_G0015869.1 mouse_genomes_project 1 136928183 136929673 - Rnpep protein_coding retained_intron MGP_CASTEiJ_T0021568.1 MGP_CASTEiJ_G0015869.1 mouse_genomes_project 1 136929603 136931346 - Rnpep protein_coding retained_intron MGP_CASTEiJ_T0021569.1 MGP_CASTEiJ_G0015869.1 mouse_genomes_project 1 136929894 136932149 - Rnpep protein_coding retained_intron MGP_CASTEiJ_T0018223.1 MGP_CASTEiJ_G0015195.1 mouse_genomes_project 1 11052464 11089014 - MGP_CASTEiJ_P0018223 Lactb2 protein_coding protein_coding MGP_CASTEiJ_T0018224.1 MGP_CASTEiJ_G0015195.1 mouse_genomes_project 1 11056679 11065072 - Lactb2 protein_coding retained_intron MGP_CASTEiJ_T0002876.1 MGP_CASTEiJ_G0002710.1 mouse_genomes_project 1 192072302 192101991 - Gm38155 antisense antisense MGP_CASTEiJ_T0021446.1 MGP_CASTEiJ_G0015841.1 mouse_genomes_project 1 135209332 135220298 - MGP_CASTEiJ_P0021446 Lax1 protein_coding protein_coding MGP_CASTEiJ_T0021447.1 MGP_CASTEiJ_G0015841.1 mouse_genomes_project 1 135210702 135220276 - MGP_CASTEiJ_P0021447 Lax1 protein_coding protein_coding MGP_CASTEiJ_T0000346.1 MGP_CASTEiJ_G0000295.1 mouse_genomes_project 1 10641676 10643299 - TEC TEC MGP_CASTEiJ_T0100262.1 MGP_CASTEiJ_G0037175.1 mouse_genomes_project 1 29198272 29198399 - Gm26145 snoRNA snoRNA MGP_CASTEiJ_T0005779.1 MGP_CASTEiJ_G0004859.1 mouse_genomes_project 1 156503436 156520172 - C230024C17Rik lincRNA lincRNA MGP_CASTEiJ_T0020687.1 MGP_CASTEiJ_G0015682.1 mouse_genomes_project 1 93508837 93599348 - MGP_CASTEiJ_P0020687 Kif1a protein_coding protein_coding MGP_CASTEiJ_T0020688.1 MGP_CASTEiJ_G0015682.1 mouse_genomes_project 1 93511126 93599357 - MGP_CASTEiJ_P0020688 Kif1a protein_coding protein_coding MGP_CASTEiJ_T0020689.1 MGP_CASTEiJ_G0015682.1 mouse_genomes_project 1 93511315 93599477 - MGP_CASTEiJ_P0020689 Kif1a protein_coding protein_coding MGP_CASTEiJ_T0020690.1 MGP_CASTEiJ_G0015682.1 mouse_genomes_project 1 93511655 93599373 - MGP_CASTEiJ_P0020690 Kif1a protein_coding protein_coding MGP_CASTEiJ_T0020691.1 MGP_CASTEiJ_G0015682.1 mouse_genomes_project 1 93511832 93580085 - MGP_CASTEiJ_P0020691 Kif1a protein_coding protein_coding MGP_CASTEiJ_T0020692.1 MGP_CASTEiJ_G0015682.1 mouse_genomes_project 1 93515671 93518054 - MGP_CASTEiJ_P0020692 Kif1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020693.1 MGP_CASTEiJ_G0015682.1 mouse_genomes_project 1 93516843 93520565 - Kif1a protein_coding retained_intron MGP_CASTEiJ_T0020694.1 MGP_CASTEiJ_G0015682.1 mouse_genomes_project 1 93532377 93599372 - Kif1a protein_coding processed_transcript MGP_CASTEiJ_T0020695.1 MGP_CASTEiJ_G0015682.1 mouse_genomes_project 1 93535801 93547261 - MGP_CASTEiJ_P0020695 Kif1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020696.1 MGP_CASTEiJ_G0015682.1 mouse_genomes_project 1 93562203 93564842 - Kif1a protein_coding processed_transcript MGP_CASTEiJ_T0020697.1 MGP_CASTEiJ_G0015682.1 mouse_genomes_project 1 93573847 93599360 - MGP_CASTEiJ_P0020697 Kif1a protein_coding protein_coding MGP_CASTEiJ_T0002823.1 MGP_CASTEiJ_G0002668.1 mouse_genomes_project 1 164203386 164204181 + Gm37634 antisense antisense MGP_CASTEiJ_T0011843.1 MGP_CASTEiJ_G0010006.1 mouse_genomes_project 1 106682922 106683871 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023097.1 MGP_CASTEiJ_G0016202.1 mouse_genomes_project 1 183767915 183785922 - MGP_CASTEiJ_P0023097 protein_coding protein_coding MGP_CASTEiJ_T0000408.1 MGP_CASTEiJ_G0000354.1 mouse_genomes_project 1 32301848 32303098 - TEC TEC MGP_CASTEiJ_T0023010.1 MGP_CASTEiJ_G0016182.1 mouse_genomes_project 1 179651222 179661527 - MGP_CASTEiJ_P0023010 Chml protein_coding protein_coding MGP_CASTEiJ_T0005891.1 MGP_CASTEiJ_G0004945.1 mouse_genomes_project 1 196205935 196207317 + D730003I15Rik lincRNA lincRNA MGP_CASTEiJ_T0005892.1 MGP_CASTEiJ_G0004945.1 mouse_genomes_project 1 196205955 196207622 + D730003I15Rik lincRNA lincRNA MGP_CASTEiJ_T0020381.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87359743 87390256 + Gigyf2 protein_coding processed_transcript MGP_CASTEiJ_T0020382.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87359748 87488269 + MGP_CASTEiJ_P0020382 Gigyf2 protein_coding protein_coding MGP_CASTEiJ_T0020383.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87359774 87486616 + MGP_CASTEiJ_P0020383 Gigyf2 protein_coding protein_coding MGP_CASTEiJ_T0020384.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87359775 87392315 + Gigyf2 protein_coding processed_transcript MGP_CASTEiJ_T0020385.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87359778 87461572 + MGP_CASTEiJ_P0020385 Gigyf2 protein_coding protein_coding MGP_CASTEiJ_T0020386.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87359791 87361753 + Gigyf2 protein_coding retained_intron MGP_CASTEiJ_T0020387.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87359793 87427203 + Gigyf2 protein_coding processed_transcript MGP_CASTEiJ_T0020388.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87359811 87470201 + MGP_CASTEiJ_P0020388 Gigyf2 protein_coding protein_coding MGP_CASTEiJ_T0020389.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87388979 87486616 + MGP_CASTEiJ_P0020389 Gigyf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020390.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87388979 87486616 + MGP_CASTEiJ_P0020390 Gigyf2 protein_coding protein_coding MGP_CASTEiJ_T0020391.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87398903 87415275 + Gigyf2 protein_coding retained_intron MGP_CASTEiJ_T0020392.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87399263 87400755 + Gigyf2 protein_coding retained_intron MGP_CASTEiJ_T0020393.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87422647 87443755 + Gigyf2 protein_coding processed_transcript MGP_CASTEiJ_T0020394.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87422668 87443486 + MGP_CASTEiJ_P0020394 Gigyf2 protein_coding protein_coding MGP_CASTEiJ_T0020397.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87440110 87479513 + MGP_CASTEiJ_P0020397 Gigyf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020398.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87440169 87444144 + MGP_CASTEiJ_P0020398 Gigyf2 protein_coding protein_coding MGP_CASTEiJ_T0020399.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87441356 87444054 + MGP_CASTEiJ_P0020399 Gigyf2 protein_coding protein_coding MGP_CASTEiJ_T0020400.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87441388 87447270 + MGP_CASTEiJ_P0020400 Gigyf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020401.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87441404 87443809 + MGP_CASTEiJ_P0020401 Gigyf2 protein_coding protein_coding MGP_CASTEiJ_T0020402.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87443821 87456889 + MGP_CASTEiJ_P0020402 Gigyf2 protein_coding protein_coding MGP_CASTEiJ_T0020403.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87456748 87458275 + Gigyf2 protein_coding retained_intron MGP_CASTEiJ_T0020404.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87469511 87488269 + Gigyf2 protein_coding processed_transcript MGP_CASTEiJ_T0020405.1 MGP_CASTEiJ_G0015614.1 mouse_genomes_project 1 87480808 87486679 + Gigyf2 protein_coding retained_intron MGP_CASTEiJ_T0023245.1 MGP_CASTEiJ_G0016230.1 mouse_genomes_project 1 186165115 186181870 + protein_coding retained_intron MGP_CASTEiJ_T0023246.1 MGP_CASTEiJ_G0016230.1 mouse_genomes_project 1 186167163 186196058 + MGP_CASTEiJ_P0023246 protein_coding protein_coding MGP_CASTEiJ_T0023247.1 MGP_CASTEiJ_G0016230.1 mouse_genomes_project 1 186168860 186173592 + protein_coding processed_transcript MGP_CASTEiJ_T0005801.1 MGP_CASTEiJ_G0004874.1 mouse_genomes_project 1 163981920 163982384 + Gm38060 lincRNA lincRNA MGP_CASTEiJ_T0020143.1 MGP_CASTEiJ_G0015565.1 mouse_genomes_project 1 80329265 80607055 - MGP_CASTEiJ_P0020143 Dock10 protein_coding protein_coding MGP_CASTEiJ_T0020144.1 MGP_CASTEiJ_G0015565.1 mouse_genomes_project 1 80329380 80437465 - MGP_CASTEiJ_P0020144 Dock10 protein_coding protein_coding MGP_CASTEiJ_T0020145.1 MGP_CASTEiJ_G0015565.1 mouse_genomes_project 1 80329745 80515562 - MGP_CASTEiJ_P0020145 Dock10 protein_coding protein_coding MGP_CASTEiJ_T0020146.1 MGP_CASTEiJ_G0015565.1 mouse_genomes_project 1 80329833 80365413 - MGP_CASTEiJ_P0020146 Dock10 protein_coding protein_coding MGP_CASTEiJ_T0020147.1 MGP_CASTEiJ_G0015565.1 mouse_genomes_project 1 80329905 80515528 - MGP_CASTEiJ_P0020147 Dock10 protein_coding protein_coding MGP_CASTEiJ_T0020148.1 MGP_CASTEiJ_G0015565.1 mouse_genomes_project 1 80331083 80334556 - Dock10 protein_coding retained_intron MGP_CASTEiJ_T0020149.1 MGP_CASTEiJ_G0015565.1 mouse_genomes_project 1 80353421 80356802 - Dock10 protein_coding retained_intron MGP_CASTEiJ_T0020150.1 MGP_CASTEiJ_G0015565.1 mouse_genomes_project 1 80426494 80607134 - Dock10 protein_coding retained_intron MGP_CASTEiJ_T0020151.1 MGP_CASTEiJ_G0015565.1 mouse_genomes_project 1 80429622 80550836 - MGP_CASTEiJ_P0020151 Dock10 protein_coding protein_coding MGP_CASTEiJ_T0020152.1 MGP_CASTEiJ_G0015565.1 mouse_genomes_project 1 80437233 80515545 - MGP_CASTEiJ_P0020152 Dock10 protein_coding protein_coding MGP_CASTEiJ_T0020153.1 MGP_CASTEiJ_G0015565.1 mouse_genomes_project 1 80494109 80607094 - Dock10 protein_coding retained_intron MGP_CASTEiJ_T0100340.1 MGP_CASTEiJ_G0037253.1 mouse_genomes_project 1 189832685 189832817 + Snora36b snoRNA snoRNA MGP_CASTEiJ_T0023523.1 MGP_CASTEiJ_G0016286.1 mouse_genomes_project 1 196301463 196313426 - MGP_CASTEiJ_P0023523 Nenf protein_coding protein_coding MGP_CASTEiJ_T0011570.1 MGP_CASTEiJ_G0009733.1 mouse_genomes_project 1 4929524 4929810 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000592.1 MGP_CASTEiJ_G0000538.1 mouse_genomes_project 1 132732454 132733836 - TEC TEC MGP_CASTEiJ_T0005610.1 MGP_CASTEiJ_G0004721.1 mouse_genomes_project 1 63801241 63809457 + Gm28982 lincRNA lincRNA MGP_CASTEiJ_T0011599.1 MGP_CASTEiJ_G0009762.1 mouse_genomes_project 1 14851035 14851507 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011977.1 MGP_CASTEiJ_G0010140.1 mouse_genomes_project 1 168806251 168807825 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011731.1 MGP_CASTEiJ_G0009894.1 mouse_genomes_project 1 58032113 58033496 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023069.1 MGP_CASTEiJ_G0016194.1 mouse_genomes_project 1 182325827 182403659 + MGP_CASTEiJ_P0023069 Desi2 protein_coding protein_coding MGP_CASTEiJ_T0023070.1 MGP_CASTEiJ_G0016194.1 mouse_genomes_project 1 182341269 182405222 + MGP_CASTEiJ_P0023070 Desi2 protein_coding protein_coding MGP_CASTEiJ_T0023071.1 MGP_CASTEiJ_G0016194.1 mouse_genomes_project 1 182341384 182411753 + MGP_CASTEiJ_P0023071 Desi2 protein_coding protein_coding MGP_CASTEiJ_T0023072.1 MGP_CASTEiJ_G0016194.1 mouse_genomes_project 1 182410542 182411747 + MGP_CASTEiJ_P0023072 Desi2 protein_coding protein_coding MGP_CASTEiJ_T0018975.1 MGP_CASTEiJ_G0015354.1 mouse_genomes_project 1 49972912 49988332 + MGP_CASTEiJ_P0018975 Sdpr protein_coding protein_coding MGP_CASTEiJ_T0005765.1 MGP_CASTEiJ_G0004846.1 mouse_genomes_project 1 139832837 139836196 + A430106G13Rik lincRNA lincRNA MGP_CASTEiJ_T0018715.1 MGP_CASTEiJ_G0015298.1 mouse_genomes_project 1 36166922 36169190 - Lyg1 protein_coding processed_transcript MGP_CASTEiJ_T0018716.1 MGP_CASTEiJ_G0015298.1 mouse_genomes_project 1 36166922 36178989 - MGP_CASTEiJ_P0018716 Lyg1 protein_coding protein_coding MGP_CASTEiJ_T0018717.1 MGP_CASTEiJ_G0015298.1 mouse_genomes_project 1 36166924 36178989 - MGP_CASTEiJ_P0018717 Lyg1 protein_coding protein_coding MGP_CASTEiJ_T0000681.1 MGP_CASTEiJ_G0000625.1 mouse_genomes_project 1 164062039 164063802 + TEC TEC MGP_CASTEiJ_T0021825.1 MGP_CASTEiJ_G0015921.1 mouse_genomes_project 1 152881194 152914868 - MGP_CASTEiJ_P0021825 BC003331 protein_coding protein_coding MGP_CASTEiJ_T0021826.1 MGP_CASTEiJ_G0015921.1 mouse_genomes_project 1 152881202 152914843 - MGP_CASTEiJ_P0021826 BC003331 protein_coding protein_coding MGP_CASTEiJ_T0021827.1 MGP_CASTEiJ_G0015921.1 mouse_genomes_project 1 152881202 152914550 - MGP_CASTEiJ_P0021827 BC003331 protein_coding protein_coding MGP_CASTEiJ_T0021828.1 MGP_CASTEiJ_G0015921.1 mouse_genomes_project 1 152882410 152914507 - MGP_CASTEiJ_P0021828 BC003331 protein_coding protein_coding MGP_CASTEiJ_T0021829.1 MGP_CASTEiJ_G0015921.1 mouse_genomes_project 1 152882420 152914531 - MGP_CASTEiJ_P0021829 BC003331 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021830.1 MGP_CASTEiJ_G0015921.1 mouse_genomes_project 1 152896110 152904227 - BC003331 protein_coding retained_intron MGP_CASTEiJ_T0021831.1 MGP_CASTEiJ_G0015921.1 mouse_genomes_project 1 152896838 152914725 - BC003331 protein_coding processed_transcript MGP_CASTEiJ_T0021832.1 MGP_CASTEiJ_G0015921.1 mouse_genomes_project 1 152906033 152914536 - BC003331 protein_coding retained_intron MGP_CASTEiJ_T0021833.1 MGP_CASTEiJ_G0015921.1 mouse_genomes_project 1 152909766 152914535 - BC003331 protein_coding retained_intron MGP_CASTEiJ_T0009307.1 MGP_CASTEiJ_G0007495.1 mouse_genomes_project 1 174607292 174607354 + Gm27844 miRNA miRNA MGP_CASTEiJ_T0019251.1 MGP_CASTEiJ_G0015403.1 mouse_genomes_project 1 57290367 57315723 - MGP_CASTEiJ_P0019251 Ppil3 protein_coding protein_coding MGP_CASTEiJ_T0019252.1 MGP_CASTEiJ_G0015403.1 mouse_genomes_project 1 57290367 57315728 - MGP_CASTEiJ_P0019252 Ppil3 protein_coding protein_coding MGP_CASTEiJ_T0019253.1 MGP_CASTEiJ_G0015403.1 mouse_genomes_project 1 57290370 57315780 - MGP_CASTEiJ_P0019253 Ppil3 protein_coding protein_coding MGP_CASTEiJ_T0019254.1 MGP_CASTEiJ_G0015403.1 mouse_genomes_project 1 57290392 57291559 - Ppil3 protein_coding processed_transcript MGP_CASTEiJ_T0019255.1 MGP_CASTEiJ_G0015403.1 mouse_genomes_project 1 57293159 57315663 - MGP_CASTEiJ_P0019255 Ppil3 protein_coding protein_coding MGP_CASTEiJ_T0019256.1 MGP_CASTEiJ_G0015403.1 mouse_genomes_project 1 57293761 57315733 - MGP_CASTEiJ_P0019256 Ppil3 protein_coding protein_coding MGP_CASTEiJ_T0019257.1 MGP_CASTEiJ_G0015403.1 mouse_genomes_project 1 57293765 57315776 - MGP_CASTEiJ_P0019257 Ppil3 protein_coding protein_coding MGP_CASTEiJ_T0019258.1 MGP_CASTEiJ_G0015403.1 mouse_genomes_project 1 57297187 57315470 - Ppil3 protein_coding retained_intron MGP_CASTEiJ_T0019259.1 MGP_CASTEiJ_G0015403.1 mouse_genomes_project 1 57297851 57300021 - Ppil3 protein_coding retained_intron MGP_CASTEiJ_T0011713.1 MGP_CASTEiJ_G0009876.1 mouse_genomes_project 1 52107852 52108175 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011774.1 MGP_CASTEiJ_G0009937.1 mouse_genomes_project 1 71181033 71181337 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098435.1 MGP_CASTEiJ_G0035366.1 mouse_genomes_project 1 139849699 139849819 - Gm23782 rRNA rRNA MGP_CASTEiJ_T0021462.1 MGP_CASTEiJ_G0015845.1 mouse_genomes_project 1 135595110 135610893 + MGP_CASTEiJ_P0021462 Fmod protein_coding protein_coding MGP_CASTEiJ_T0021463.1 MGP_CASTEiJ_G0015845.1 mouse_genomes_project 1 135595352 135598378 + MGP_CASTEiJ_P0021463 Fmod protein_coding protein_coding MGP_CASTEiJ_T0009269.1 MGP_CASTEiJ_G0007457.1 mouse_genomes_project 1 85670616 85670694 + Gm25472 miRNA miRNA MGP_CASTEiJ_T0000327.1 MGP_CASTEiJ_G0000276.1 mouse_genomes_project 1 2678186 2680219 + TEC TEC MGP_CASTEiJ_T0018767.1 MGP_CASTEiJ_G0015308.1 mouse_genomes_project 1 37675086 37678574 + MGP_CASTEiJ_P0018767 Rpl31 protein_coding protein_coding MGP_CASTEiJ_T0018768.1 MGP_CASTEiJ_G0015308.1 mouse_genomes_project 1 37675357 37679119 + MGP_CASTEiJ_P0018768 Rpl31 protein_coding protein_coding MGP_CASTEiJ_T0018769.1 MGP_CASTEiJ_G0015308.1 mouse_genomes_project 1 37677057 37678574 + Rpl31 protein_coding retained_intron MGP_CASTEiJ_T0011881.1 MGP_CASTEiJ_G0010044.1 mouse_genomes_project 1 120800027 120800547 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011985.1 MGP_CASTEiJ_G0010148.1 mouse_genomes_project 1 170535244 170535653 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011751.1 MGP_CASTEiJ_G0009914.1 mouse_genomes_project 1 62184498 62184744 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005786.1 MGP_CASTEiJ_G0004864.1 mouse_genomes_project 1 157074297 157090183 + 4930532M18Rik lincRNA lincRNA MGP_CASTEiJ_T0005787.1 MGP_CASTEiJ_G0004864.1 mouse_genomes_project 1 157075602 157090004 + 4930532M18Rik lincRNA lincRNA MGP_CASTEiJ_T0000746.1 MGP_CASTEiJ_G0000688.1 mouse_genomes_project 1 191402006 191403878 - TEC TEC MGP_CASTEiJ_T0011686.1 MGP_CASTEiJ_G0009849.1 mouse_genomes_project 1 46006592 46007922 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019144.1 MGP_CASTEiJ_G0015382.1 mouse_genomes_project 1 53840261 53855217 - MGP_CASTEiJ_P0019144 protein_coding unknown_likely_coding MGP_CASTEiJ_T0019145.1 MGP_CASTEiJ_G0015382.1 mouse_genomes_project 1 53850397 53855576 - MGP_CASTEiJ_P0019145 protein_coding protein_coding MGP_CASTEiJ_T0019146.1 MGP_CASTEiJ_G0015382.1 mouse_genomes_project 1 53851866 53855576 - MGP_CASTEiJ_P0019146 protein_coding protein_coding MGP_CASTEiJ_T0011721.1 MGP_CASTEiJ_G0009884.1 mouse_genomes_project 1 53932620 53932927 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022295.1 MGP_CASTEiJ_G0016000.1 mouse_genomes_project 1 164998720 165006559 - MGP_CASTEiJ_P0022295 Fasl protein_coding protein_coding MGP_CASTEiJ_T0022296.1 MGP_CASTEiJ_G0016000.1 mouse_genomes_project 1 164999453 165006422 - MGP_CASTEiJ_P0022296 Fasl protein_coding protein_coding MGP_CASTEiJ_T0000321.1 MGP_CASTEiJ_G0000270.1 mouse_genomes_project 1 888988 890616 + TEC TEC MGP_CASTEiJ_T0018391.1 MGP_CASTEiJ_G0015239.1 mouse_genomes_project 1 21916004 21997344 + MGP_CASTEiJ_P0018391 Col9a1 protein_coding protein_coding MGP_CASTEiJ_T0018392.1 MGP_CASTEiJ_G0015239.1 mouse_genomes_project 1 21935608 21997344 + MGP_CASTEiJ_P0018392 Col9a1 protein_coding protein_coding MGP_CASTEiJ_T0018393.1 MGP_CASTEiJ_G0015239.1 mouse_genomes_project 1 21937480 21965627 + Col9a1 protein_coding processed_transcript MGP_CASTEiJ_T0018394.1 MGP_CASTEiJ_G0015239.1 mouse_genomes_project 1 21974393 21975836 + Col9a1 protein_coding processed_transcript MGP_CASTEiJ_T0011824.1 MGP_CASTEiJ_G0009987.1 mouse_genomes_project 1 100109948 100111797 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000574.1 MGP_CASTEiJ_G0000520.1 mouse_genomes_project 1 128425648 128428281 + TEC TEC MGP_CASTEiJ_T0022112.1 MGP_CASTEiJ_G0015972.1 mouse_genomes_project 1 159539196 159561294 - MGP_CASTEiJ_P0022112 Tor3a protein_coding protein_coding MGP_CASTEiJ_T0022113.1 MGP_CASTEiJ_G0015972.1 mouse_genomes_project 1 159539196 159561294 - MGP_CASTEiJ_P0022113 Tor3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022114.1 MGP_CASTEiJ_G0015972.1 mouse_genomes_project 1 159539196 159561263 - MGP_CASTEiJ_P0022114 Tor3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022115.1 MGP_CASTEiJ_G0015972.1 mouse_genomes_project 1 159540619 159561252 - MGP_CASTEiJ_P0022115 Tor3a protein_coding protein_coding MGP_CASTEiJ_T0022116.1 MGP_CASTEiJ_G0015972.1 mouse_genomes_project 1 159541267 159544194 - Tor3a protein_coding processed_transcript MGP_CASTEiJ_T0022117.1 MGP_CASTEiJ_G0015972.1 mouse_genomes_project 1 159546318 159553649 - Tor3a protein_coding processed_transcript MGP_CASTEiJ_T0022118.1 MGP_CASTEiJ_G0015972.1 mouse_genomes_project 1 159553610 159561273 - MGP_CASTEiJ_P0022118 Tor3a protein_coding protein_coding MGP_CASTEiJ_T0002882.1 MGP_CASTEiJ_G0002715.1 mouse_genomes_project 1 194757063 194761801 + Gm37422 antisense antisense MGP_CASTEiJ_T0019999.1 MGP_CASTEiJ_G0015538.1 mouse_genomes_project 1 74992857 75001108 + MGP_CASTEiJ_P0019999 Des protein_coding protein_coding MGP_CASTEiJ_T0020000.1 MGP_CASTEiJ_G0015538.1 mouse_genomes_project 1 74994045 74994934 + Des protein_coding retained_intron MGP_CASTEiJ_T0020001.1 MGP_CASTEiJ_G0015538.1 mouse_genomes_project 1 74994560 74996159 + Des protein_coding retained_intron MGP_CASTEiJ_T0020484.1 MGP_CASTEiJ_G0015634.1 mouse_genomes_project 1 88330078 88339172 + MGP_CASTEiJ_P0020484 Ugt1a1 protein_coding protein_coding MGP_CASTEiJ_T0022355.1 MGP_CASTEiJ_G0016010.1 mouse_genomes_project 1 166046703 166065951 - MGP_CASTEiJ_P0022355 Fmo4 protein_coding protein_coding MGP_CASTEiJ_T0022356.1 MGP_CASTEiJ_G0016010.1 mouse_genomes_project 1 166047398 166064830 - MGP_CASTEiJ_P0022356 Fmo4 protein_coding protein_coding MGP_CASTEiJ_T0022357.1 MGP_CASTEiJ_G0016010.1 mouse_genomes_project 1 166054180 166065951 - Fmo4 protein_coding retained_intron MGP_CASTEiJ_T0022358.1 MGP_CASTEiJ_G0016010.1 mouse_genomes_project 1 166054929 166059786 - Fmo4 protein_coding retained_intron MGP_CASTEiJ_T0022359.1 MGP_CASTEiJ_G0016010.1 mouse_genomes_project 1 166058825 166066206 - MGP_CASTEiJ_P0022359 Fmo4 protein_coding protein_coding MGP_CASTEiJ_T0022360.1 MGP_CASTEiJ_G0016010.1 mouse_genomes_project 1 166059596 166066252 - MGP_CASTEiJ_P0022360 Fmo4 protein_coding protein_coding MGP_CASTEiJ_T0000340.1 MGP_CASTEiJ_G0000289.1 mouse_genomes_project 1 8138099 8140033 - TEC TEC MGP_CASTEiJ_T0099092.1 MGP_CASTEiJ_G0036005.1 mouse_genomes_project 1 65661963 65662114 + Gm25411 snRNA snRNA MGP_CASTEiJ_T0022961.1 MGP_CASTEiJ_G0016160.1 mouse_genomes_project 1 177827007 177891083 - MGP_CASTEiJ_P0022961 Ifi202b protein_coding protein_coding MGP_CASTEiJ_T0011770.1 MGP_CASTEiJ_G0009933.1 mouse_genomes_project 1 68476851 68477237 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000601.1 MGP_CASTEiJ_G0000546.1 mouse_genomes_project 1 135660863 135663613 - TEC TEC MGP_CASTEiJ_T0022578.1 MGP_CASTEiJ_G0016059.1 mouse_genomes_project 1 170736716 170760356 - MGP_CASTEiJ_P0022578 Mgst3 protein_coding protein_coding MGP_CASTEiJ_T0099087.1 MGP_CASTEiJ_G0036000.1 mouse_genomes_project 1 57338125 57338232 - Gm23966 snRNA snRNA MGP_CASTEiJ_T0011801.1 MGP_CASTEiJ_G0009964.1 mouse_genomes_project 1 86268543 86268863 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000768.1 MGP_CASTEiJ_G0000709.1 mouse_genomes_project 1 199789701 199790233 + TEC TEC MGP_CASTEiJ_T0011775.1 MGP_CASTEiJ_G0009938.1 mouse_genomes_project 1 71500406 71502239 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012023.1 MGP_CASTEiJ_G0010186.1 mouse_genomes_project 1 194553947 194554088 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011908.1 MGP_CASTEiJ_G0010071.1 mouse_genomes_project 1 138582864 138583341 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002683.1 MGP_CASTEiJ_G0002561.1 mouse_genomes_project 1 36477835 36488002 + Gm16150 antisense antisense MGP_CASTEiJ_T0002684.1 MGP_CASTEiJ_G0002561.1 mouse_genomes_project 1 36482098 36489065 + Gm16150 antisense antisense MGP_CASTEiJ_T0022828.1 MGP_CASTEiJ_G0016120.1 mouse_genomes_project 1 175718755 175742166 - MGP_CASTEiJ_P0022828 Ncstn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022829.1 MGP_CASTEiJ_G0016120.1 mouse_genomes_project 1 175718755 175742166 - MGP_CASTEiJ_P0022829 Ncstn protein_coding protein_coding MGP_CASTEiJ_T0022830.1 MGP_CASTEiJ_G0016120.1 mouse_genomes_project 1 175718755 175742166 - MGP_CASTEiJ_P0022830 Ncstn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022831.1 MGP_CASTEiJ_G0016120.1 mouse_genomes_project 1 175719442 175720790 - Ncstn protein_coding retained_intron MGP_CASTEiJ_T0022832.1 MGP_CASTEiJ_G0016120.1 mouse_genomes_project 1 175720595 175723994 - Ncstn protein_coding retained_intron MGP_CASTEiJ_T0022833.1 MGP_CASTEiJ_G0016120.1 mouse_genomes_project 1 175733518 175742166 - Ncstn protein_coding retained_intron MGP_CASTEiJ_T0002889.1 MGP_CASTEiJ_G0002721.1 mouse_genomes_project 1 196907927 196924447 - 1700034H15Rik antisense antisense MGP_CASTEiJ_T0002890.1 MGP_CASTEiJ_G0002721.1 mouse_genomes_project 1 196913833 196922690 - 1700034H15Rik antisense antisense MGP_CASTEiJ_T0002891.1 MGP_CASTEiJ_G0002721.1 mouse_genomes_project 1 196913835 196922817 - 1700034H15Rik antisense antisense MGP_CASTEiJ_T0002892.1 MGP_CASTEiJ_G0002721.1 mouse_genomes_project 1 196914024 196925282 - 1700034H15Rik antisense antisense MGP_CASTEiJ_T0002893.1 MGP_CASTEiJ_G0002721.1 mouse_genomes_project 1 196917706 196931092 - 1700034H15Rik antisense antisense MGP_CASTEiJ_T0002894.1 MGP_CASTEiJ_G0002721.1 mouse_genomes_project 1 196923530 196931100 - 1700034H15Rik antisense antisense MGP_CASTEiJ_T0009316.1 MGP_CASTEiJ_G0007504.1 mouse_genomes_project 1 189832753 189832822 + Mir664 miRNA miRNA MGP_CASTEiJ_T0021339.1 MGP_CASTEiJ_G0015820.1 mouse_genomes_project 1 133792433 133805390 - Tmcc2 protein_coding retained_intron MGP_CASTEiJ_T0021340.1 MGP_CASTEiJ_G0015820.1 mouse_genomes_project 1 133792433 133805391 - MGP_CASTEiJ_P0021340 Tmcc2 protein_coding protein_coding MGP_CASTEiJ_T0021341.1 MGP_CASTEiJ_G0015820.1 mouse_genomes_project 1 133793572 133829969 - MGP_CASTEiJ_P0021341 Tmcc2 protein_coding protein_coding MGP_CASTEiJ_T0021342.1 MGP_CASTEiJ_G0015820.1 mouse_genomes_project 1 133798094 133804576 - Tmcc2 protein_coding processed_transcript MGP_CASTEiJ_T0021343.1 MGP_CASTEiJ_G0015820.1 mouse_genomes_project 1 133798521 133802456 - Tmcc2 protein_coding processed_transcript MGP_CASTEiJ_T0020337.1 MGP_CASTEiJ_G0015602.1 mouse_genomes_project 1 86555240 86581102 + MGP_CASTEiJ_P0020337 Cops7b protein_coding protein_coding MGP_CASTEiJ_T0020338.1 MGP_CASTEiJ_G0015602.1 mouse_genomes_project 1 86555273 86561673 + MGP_CASTEiJ_P0020338 Cops7b protein_coding protein_coding MGP_CASTEiJ_T0020339.1 MGP_CASTEiJ_G0015602.1 mouse_genomes_project 1 86559469 86578205 + MGP_CASTEiJ_P0020339 Cops7b protein_coding protein_coding MGP_CASTEiJ_T0020340.1 MGP_CASTEiJ_G0015602.1 mouse_genomes_project 1 86559500 86578021 + MGP_CASTEiJ_P0020340 Cops7b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020341.1 MGP_CASTEiJ_G0015602.1 mouse_genomes_project 1 86559511 86578695 + MGP_CASTEiJ_P0020341 Cops7b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020342.1 MGP_CASTEiJ_G0015602.1 mouse_genomes_project 1 86568619 86572936 + Cops7b protein_coding processed_transcript MGP_CASTEiJ_T0011575.1 MGP_CASTEiJ_G0009738.1 mouse_genomes_project 1 6087029 6087223 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019850.1 MGP_CASTEiJ_G0015514.1 mouse_genomes_project 1 74392542 74402676 - MGP_CASTEiJ_P0019850 Prkag3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019851.1 MGP_CASTEiJ_G0015514.1 mouse_genomes_project 1 74393853 74402946 - MGP_CASTEiJ_P0019851 Prkag3 protein_coding protein_coding MGP_CASTEiJ_T0019852.1 MGP_CASTEiJ_G0015514.1 mouse_genomes_project 1 74393853 74402298 - MGP_CASTEiJ_P0019852 Prkag3 protein_coding protein_coding MGP_CASTEiJ_T0019853.1 MGP_CASTEiJ_G0015514.1 mouse_genomes_project 1 74395118 74402588 - MGP_CASTEiJ_P0019853 Prkag3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019854.1 MGP_CASTEiJ_G0015514.1 mouse_genomes_project 1 74401233 74402625 - MGP_CASTEiJ_P0019854 Prkag3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023277.1 MGP_CASTEiJ_G0016235.1 mouse_genomes_project 1 186724115 186731162 - MGP_CASTEiJ_P0023277 Degs1 protein_coding protein_coding MGP_CASTEiJ_T0023278.1 MGP_CASTEiJ_G0016235.1 mouse_genomes_project 1 186724748 186731103 - MGP_CASTEiJ_P0023278 Degs1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023279.1 MGP_CASTEiJ_G0016235.1 mouse_genomes_project 1 186726841 186731162 - Degs1 protein_coding retained_intron MGP_CASTEiJ_T0023280.1 MGP_CASTEiJ_G0016235.1 mouse_genomes_project 1 186727376 186730582 - MGP_CASTEiJ_P0023280 Degs1 protein_coding protein_coding MGP_CASTEiJ_T0019691.1 MGP_CASTEiJ_G0015484.1 mouse_genomes_project 1 71827184 71921264 + MGP_CASTEiJ_P0019691 Xrcc5 protein_coding protein_coding MGP_CASTEiJ_T0019692.1 MGP_CASTEiJ_G0015484.1 mouse_genomes_project 1 71830264 71923349 + MGP_CASTEiJ_P0019692 Xrcc5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022627.1 MGP_CASTEiJ_G0016074.1 mouse_genomes_project 1 173755560 173763704 - MGP_CASTEiJ_P0022627 Gm7694 protein_coding protein_coding MGP_CASTEiJ_T0010931.1 MGP_CASTEiJ_G0009119.1 mouse_genomes_project 1 189416577 189416852 - Gm23780 misc_RNA misc_RNA MGP_CASTEiJ_T0022042.1 MGP_CASTEiJ_G0015960.1 mouse_genomes_project 1 158431015 158444960 + MGP_CASTEiJ_P0022042 Acbd6 protein_coding protein_coding MGP_CASTEiJ_T0022043.1 MGP_CASTEiJ_G0015960.1 mouse_genomes_project 1 158431017 158566968 + MGP_CASTEiJ_P0022043 Acbd6 protein_coding protein_coding MGP_CASTEiJ_T0022044.1 MGP_CASTEiJ_G0015960.1 mouse_genomes_project 1 158431021 158460519 + MGP_CASTEiJ_P0022044 Acbd6 protein_coding protein_coding MGP_CASTEiJ_T0022045.1 MGP_CASTEiJ_G0015960.1 mouse_genomes_project 1 158431491 158562932 + MGP_CASTEiJ_P0022045 Acbd6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022046.1 MGP_CASTEiJ_G0015960.1 mouse_genomes_project 1 158436027 158562792 + Acbd6 protein_coding processed_transcript MGP_CASTEiJ_T0022047.1 MGP_CASTEiJ_G0015960.1 mouse_genomes_project 1 158440146 158444931 + Acbd6 protein_coding retained_intron MGP_CASTEiJ_T0022048.1 MGP_CASTEiJ_G0015960.1 mouse_genomes_project 1 158562687 158564028 + MGP_CASTEiJ_P0022048 Acbd6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0005878.1 MGP_CASTEiJ_G0004934.1 mouse_genomes_project 1 190813847 190864344 + Gm37134 lincRNA lincRNA MGP_CASTEiJ_T0021591.1 MGP_CASTEiJ_G0015874.1 mouse_genomes_project 1 137100112 137262808 - MGP_CASTEiJ_P0021591 Nav1 protein_coding protein_coding MGP_CASTEiJ_T0021592.1 MGP_CASTEiJ_G0015874.1 mouse_genomes_project 1 137100112 137262458 - MGP_CASTEiJ_P0021592 Nav1 protein_coding protein_coding MGP_CASTEiJ_T0021593.1 MGP_CASTEiJ_G0015874.1 mouse_genomes_project 1 137104414 137284331 - MGP_CASTEiJ_P0021593 Nav1 protein_coding protein_coding MGP_CASTEiJ_T0021594.1 MGP_CASTEiJ_G0015874.1 mouse_genomes_project 1 137122521 137124051 - Nav1 protein_coding retained_intron MGP_CASTEiJ_T0021595.1 MGP_CASTEiJ_G0015874.1 mouse_genomes_project 1 137125459 137139997 - MGP_CASTEiJ_P0021595 Nav1 protein_coding protein_coding MGP_CASTEiJ_T0021596.1 MGP_CASTEiJ_G0015874.1 mouse_genomes_project 1 137127922 137131384 - Nav1 protein_coding retained_intron MGP_CASTEiJ_T0021597.1 MGP_CASTEiJ_G0015874.1 mouse_genomes_project 1 137127922 137185083 - Nav1 protein_coding retained_intron MGP_CASTEiJ_T0021598.1 MGP_CASTEiJ_G0015874.1 mouse_genomes_project 1 137128821 137185150 - Nav1 protein_coding processed_transcript MGP_CASTEiJ_T0018819.1 MGP_CASTEiJ_G0015320.1 mouse_genomes_project 1 38828541 38855893 + MGP_CASTEiJ_P0018819 Il18r1 protein_coding protein_coding MGP_CASTEiJ_T0018820.1 MGP_CASTEiJ_G0015320.1 mouse_genomes_project 1 38828665 38855895 + MGP_CASTEiJ_P0018820 Il18r1 protein_coding protein_coding MGP_CASTEiJ_T0018821.1 MGP_CASTEiJ_G0015320.1 mouse_genomes_project 1 38828964 38855893 + MGP_CASTEiJ_P0018821 Il18r1 protein_coding protein_coding MGP_CASTEiJ_T0018822.1 MGP_CASTEiJ_G0015320.1 mouse_genomes_project 1 38829000 38865184 + MGP_CASTEiJ_P0018822 Il18r1 protein_coding protein_coding MGP_CASTEiJ_T0018823.1 MGP_CASTEiJ_G0015320.1 mouse_genomes_project 1 38829000 38865185 + MGP_CASTEiJ_P0018823 Il18r1 protein_coding protein_coding MGP_CASTEiJ_T0018824.1 MGP_CASTEiJ_G0015320.1 mouse_genomes_project 1 38829000 38865164 + MGP_CASTEiJ_P0018824 Il18r1 protein_coding protein_coding MGP_CASTEiJ_T0021271.1 MGP_CASTEiJ_G0015806.1 mouse_genomes_project 1 133084720 133112283 + MGP_CASTEiJ_P0021271 Rab7b protein_coding protein_coding MGP_CASTEiJ_T0021272.1 MGP_CASTEiJ_G0015806.1 mouse_genomes_project 1 133084732 133109608 + MGP_CASTEiJ_P0021272 Rab7b protein_coding protein_coding MGP_CASTEiJ_T0021273.1 MGP_CASTEiJ_G0015806.1 mouse_genomes_project 1 133084763 133108521 + MGP_CASTEiJ_P0021273 Rab7b protein_coding protein_coding MGP_CASTEiJ_T0021274.1 MGP_CASTEiJ_G0015806.1 mouse_genomes_project 1 133084791 133108688 + MGP_CASTEiJ_P0021274 Rab7b protein_coding protein_coding MGP_CASTEiJ_T0021275.1 MGP_CASTEiJ_G0015806.1 mouse_genomes_project 1 133093885 133102757 + Rab7b protein_coding processed_transcript MGP_CASTEiJ_T0000703.1 MGP_CASTEiJ_G0000647.1 mouse_genomes_project 1 176067647 176070402 - TEC TEC MGP_CASTEiJ_T0101955.1 MGP_CASTEiJ_G0038680.1 mouse_genomes_project 1 181891898 182331422 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011685.1 MGP_CASTEiJ_G0009848.1 mouse_genomes_project 1 45415165 45415457 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002752.1 MGP_CASTEiJ_G0002613.1 mouse_genomes_project 1 93292046 93310346 - Gm29481 antisense antisense MGP_CASTEiJ_T0018041.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3491344 3519603 + MGP_CASTEiJ_P0018041 Rb1cc1 protein_coding protein_coding MGP_CASTEiJ_T0018042.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3491374 3523612 + MGP_CASTEiJ_P0018042 Rb1cc1 protein_coding protein_coding MGP_CASTEiJ_T0018043.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3499993 3563665 + MGP_CASTEiJ_P0018043 Rb1cc1 protein_coding protein_coding MGP_CASTEiJ_T0018044.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3500011 3516072 + Rb1cc1 protein_coding retained_intron MGP_CASTEiJ_T0018045.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3500205 3551101 + MGP_CASTEiJ_P0018045 Rb1cc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0018046.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3500356 3519302 + MGP_CASTEiJ_P0018046 Rb1cc1 protein_coding protein_coding MGP_CASTEiJ_T0018047.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3513336 3535148 + MGP_CASTEiJ_P0018047 Rb1cc1 protein_coding protein_coding MGP_CASTEiJ_T0018048.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3519570 3562593 + MGP_CASTEiJ_P0018048 Rb1cc1 protein_coding protein_coding MGP_CASTEiJ_T0018049.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3526208 3534477 + Rb1cc1 protein_coding retained_intron MGP_CASTEiJ_T0018050.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3535206 3561516 + MGP_CASTEiJ_P0018050 Rb1cc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018051.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3536095 3537376 + Rb1cc1 protein_coding processed_transcript MGP_CASTEiJ_T0018052.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3536213 3553461 + Rb1cc1 protein_coding retained_intron MGP_CASTEiJ_T0018053.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3548411 3550469 + Rb1cc1 protein_coding retained_intron MGP_CASTEiJ_T0018054.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3550517 3552520 + Rb1cc1 protein_coding retained_intron MGP_CASTEiJ_T0018055.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3550547 3561515 + MGP_CASTEiJ_P0018055 Rb1cc1 protein_coding protein_coding MGP_CASTEiJ_T0018056.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3553256 3560450 + Rb1cc1 protein_coding retained_intron MGP_CASTEiJ_T0018057.1 MGP_CASTEiJ_G0015170.1 mouse_genomes_project 1 3558321 3562591 + Rb1cc1 protein_coding retained_intron MGP_CASTEiJ_T0011827.1 MGP_CASTEiJ_G0009990.1 mouse_genomes_project 1 101130451 101131004 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018341.1 MGP_CASTEiJ_G0015227.1 mouse_genomes_project 1 18568749 18655028 - MGP_CASTEiJ_P0018341 Tram2 protein_coding protein_coding MGP_CASTEiJ_T0018342.1 MGP_CASTEiJ_G0015227.1 mouse_genomes_project 1 18581480 18619625 - Tram2 protein_coding processed_transcript MGP_CASTEiJ_T0099134.1 MGP_CASTEiJ_G0036047.1 mouse_genomes_project 1 174537093 174537257 + Gm26110 snRNA snRNA MGP_CASTEiJ_T0000668.1 MGP_CASTEiJ_G0000612.1 mouse_genomes_project 1 161541661 161544750 - TEC TEC MGP_CASTEiJ_T0000585.1 MGP_CASTEiJ_G0000531.1 mouse_genomes_project 1 131155636 131159466 + TEC TEC MGP_CASTEiJ_T0022304.1 MGP_CASTEiJ_G0016002.1 mouse_genomes_project 1 165156894 165196917 - MGP_CASTEiJ_P0022304 4930558K02Rik protein_coding protein_coding MGP_CASTEiJ_T0022305.1 MGP_CASTEiJ_G0016002.1 mouse_genomes_project 1 165156899 165186483 - 4930558K02Rik protein_coding processed_transcript MGP_CASTEiJ_T0022306.1 MGP_CASTEiJ_G0016002.1 mouse_genomes_project 1 165157194 165186624 - MGP_CASTEiJ_P0022306 4930558K02Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0098792.1 MGP_CASTEiJ_G0035722.1 mouse_genomes_project 1 89896393 89904375 + Gm28499 sense_intronic sense_intronic MGP_CASTEiJ_T0011752.1 MGP_CASTEiJ_G0009915.1 mouse_genomes_project 1 62507453 62508068 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022262.1 MGP_CASTEiJ_G0015994.1 mouse_genomes_project 1 164237202 164253875 + MGP_CASTEiJ_P0022262 Cenpl protein_coding protein_coding MGP_CASTEiJ_T0022263.1 MGP_CASTEiJ_G0015994.1 mouse_genomes_project 1 164237256 164253493 + MGP_CASTEiJ_P0022263 Cenpl protein_coding protein_coding MGP_CASTEiJ_T0022264.1 MGP_CASTEiJ_G0015994.1 mouse_genomes_project 1 164237256 164253493 + MGP_CASTEiJ_P0022264 Cenpl protein_coding protein_coding MGP_CASTEiJ_T0022265.1 MGP_CASTEiJ_G0015994.1 mouse_genomes_project 1 164237381 164253479 + MGP_CASTEiJ_P0022265 Cenpl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022266.1 MGP_CASTEiJ_G0015994.1 mouse_genomes_project 1 164237439 164253479 + MGP_CASTEiJ_P0022266 Cenpl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022267.1 MGP_CASTEiJ_G0015994.1 mouse_genomes_project 1 164237455 164253879 + MGP_CASTEiJ_P0022267 Cenpl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022268.1 MGP_CASTEiJ_G0015994.1 mouse_genomes_project 1 164237474 164250705 + MGP_CASTEiJ_P0022268 Cenpl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022269.1 MGP_CASTEiJ_G0015994.1 mouse_genomes_project 1 164237505 164253493 + MGP_CASTEiJ_P0022269 Cenpl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022270.1 MGP_CASTEiJ_G0015994.1 mouse_genomes_project 1 164238894 164239478 + Cenpl protein_coding processed_transcript MGP_CASTEiJ_T0022271.1 MGP_CASTEiJ_G0015994.1 mouse_genomes_project 1 164242495 164250616 + Cenpl protein_coding processed_transcript MGP_CASTEiJ_T0000549.1 MGP_CASTEiJ_G0000495.1 mouse_genomes_project 1 107208291 107210307 - TEC TEC MGP_CASTEiJ_T0000608.1 MGP_CASTEiJ_G0000553.1 mouse_genomes_project 1 137752309 137754535 + TEC TEC MGP_CASTEiJ_T0019741.1 MGP_CASTEiJ_G0015497.1 mouse_genomes_project 1 73896814 73897889 + MGP_CASTEiJ_P0019741 Gpbar1 protein_coding protein_coding MGP_CASTEiJ_T0000387.1 MGP_CASTEiJ_G0000334.1 mouse_genomes_project 1 23554770 23557945 - TEC TEC MGP_CASTEiJ_T0002866.1 MGP_CASTEiJ_G0002701.1 mouse_genomes_project 1 185307348 185314836 - 2210411M09Rik antisense antisense MGP_CASTEiJ_T0023028.1 MGP_CASTEiJ_G0016186.1 mouse_genomes_project 1 179933557 180263956 - MGP_CASTEiJ_P0023028 Pld5 protein_coding protein_coding MGP_CASTEiJ_T0023029.1 MGP_CASTEiJ_G0016186.1 mouse_genomes_project 1 179933658 180263970 - MGP_CASTEiJ_P0023029 Pld5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023030.1 MGP_CASTEiJ_G0016186.1 mouse_genomes_project 1 179935352 180198943 - MGP_CASTEiJ_P0023030 Pld5 protein_coding protein_coding MGP_CASTEiJ_T0023032.1 MGP_CASTEiJ_G0016186.1 mouse_genomes_project 1 179966853 180263933 - Pld5 protein_coding retained_intron MGP_CASTEiJ_T0023033.1 MGP_CASTEiJ_G0016186.1 mouse_genomes_project 1 180020856 180198842 - Pld5 protein_coding retained_intron MGP_CASTEiJ_T0023034.1 MGP_CASTEiJ_G0016186.1 mouse_genomes_project 1 180250107 180263932 - MGP_CASTEiJ_P0023034 Pld5 protein_coding protein_coding MGP_CASTEiJ_T0011556.1 MGP_CASTEiJ_G0009719.1 mouse_genomes_project 1 2341240 2342821 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023026.1 MGP_CASTEiJ_G0016185.1 mouse_genomes_project 1 179889633 179891532 + MGP_CASTEiJ_P0023026 Gm38100 protein_coding protein_coding MGP_CASTEiJ_T0023027.1 MGP_CASTEiJ_G0016185.1 mouse_genomes_project 1 179889674 179891003 + MGP_CASTEiJ_P0023027 Gm38100 protein_coding protein_coding MGP_CASTEiJ_T0021206.1 MGP_CASTEiJ_G0015788.1 mouse_genomes_project 1 132081048 132088001 + MGP_CASTEiJ_P0021206 Yod1 protein_coding protein_coding MGP_CASTEiJ_T0019260.1 MGP_CASTEiJ_G0015404.1 mouse_genomes_project 1 57315444 57335113 + MGP_CASTEiJ_P0019260 Nif3l1 protein_coding protein_coding MGP_CASTEiJ_T0019261.1 MGP_CASTEiJ_G0015404.1 mouse_genomes_project 1 57315560 57357000 + MGP_CASTEiJ_P0019261 Nif3l1 protein_coding protein_coding MGP_CASTEiJ_T0019262.1 MGP_CASTEiJ_G0015404.1 mouse_genomes_project 1 57315921 57320793 + MGP_CASTEiJ_P0019262 Nif3l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019263.1 MGP_CASTEiJ_G0015404.1 mouse_genomes_project 1 57316022 57318344 + MGP_CASTEiJ_P0019263 Nif3l1 protein_coding protein_coding MGP_CASTEiJ_T0019264.1 MGP_CASTEiJ_G0015404.1 mouse_genomes_project 1 57317924 57333925 + MGP_CASTEiJ_P0019264 Nif3l1 protein_coding protein_coding MGP_CASTEiJ_T0019265.1 MGP_CASTEiJ_G0015404.1 mouse_genomes_project 1 57319461 57329468 + Nif3l1 protein_coding retained_intron MGP_CASTEiJ_T0019266.1 MGP_CASTEiJ_G0015404.1 mouse_genomes_project 1 57323465 57327861 + Nif3l1 protein_coding retained_intron MGP_CASTEiJ_T0019267.1 MGP_CASTEiJ_G0015404.1 mouse_genomes_project 1 57329352 57333054 + Nif3l1 protein_coding retained_intron MGP_CASTEiJ_T0022608.1 MGP_CASTEiJ_G0016069.1 mouse_genomes_project 1 173427658 173573906 - MGP_CASTEiJ_P0022608 Ddr2 protein_coding protein_coding MGP_CASTEiJ_T0022609.1 MGP_CASTEiJ_G0016069.1 mouse_genomes_project 1 173427659 173549044 - MGP_CASTEiJ_P0022609 Ddr2 protein_coding protein_coding MGP_CASTEiJ_T0022610.1 MGP_CASTEiJ_G0016069.1 mouse_genomes_project 1 173433140 173573846 - MGP_CASTEiJ_P0022610 Ddr2 protein_coding protein_coding MGP_CASTEiJ_T0022611.1 MGP_CASTEiJ_G0016069.1 mouse_genomes_project 1 173461316 173574074 - MGP_CASTEiJ_P0022611 Ddr2 protein_coding protein_coding MGP_CASTEiJ_T0022612.1 MGP_CASTEiJ_G0016069.1 mouse_genomes_project 1 173495713 173574107 - Ddr2 protein_coding retained_intron MGP_CASTEiJ_T0022613.1 MGP_CASTEiJ_G0016069.1 mouse_genomes_project 1 173543788 173559921 - Ddr2 protein_coding processed_transcript MGP_CASTEiJ_T0023141.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184438225 184473833 - MGP_CASTEiJ_P0023141 Coq8a protein_coding unknown_likely_coding MGP_CASTEiJ_T0023142.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184442336 184471409 - MGP_CASTEiJ_P0023142 Coq8a protein_coding protein_coding MGP_CASTEiJ_T0023143.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184442336 184473956 - MGP_CASTEiJ_P0023143 Coq8a protein_coding protein_coding MGP_CASTEiJ_T0023144.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184444123 184473874 - MGP_CASTEiJ_P0023144 Coq8a protein_coding protein_coding MGP_CASTEiJ_T0023145.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184444255 184455752 - MGP_CASTEiJ_P0023145 Coq8a protein_coding protein_coding MGP_CASTEiJ_T0023146.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184444495 184473917 - MGP_CASTEiJ_P0023146 Coq8a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023147.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184447228 184473897 - MGP_CASTEiJ_P0023147 Coq8a protein_coding protein_coding MGP_CASTEiJ_T0023148.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184447235 184459205 - MGP_CASTEiJ_P0023148 Coq8a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023149.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184448322 184456041 - Coq8a protein_coding retained_intron MGP_CASTEiJ_T0023150.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184456125 184473897 - MGP_CASTEiJ_P0023150 Coq8a protein_coding protein_coding MGP_CASTEiJ_T0023151.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184456190 184471407 - MGP_CASTEiJ_P0023151 Coq8a protein_coding protein_coding MGP_CASTEiJ_T0023152.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184456227 184474011 - MGP_CASTEiJ_P0023152 Coq8a protein_coding protein_coding MGP_CASTEiJ_T0023153.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184456254 184459908 - MGP_CASTEiJ_P0023153 Coq8a protein_coding protein_coding MGP_CASTEiJ_T0023154.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184456260 184473908 - MGP_CASTEiJ_P0023154 Coq8a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023155.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184456263 184471586 - MGP_CASTEiJ_P0023155 Coq8a protein_coding protein_coding MGP_CASTEiJ_T0023156.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184456314 184473908 - MGP_CASTEiJ_P0023156 Coq8a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023157.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184456366 184477504 - MGP_CASTEiJ_P0023157 Coq8a protein_coding protein_coding MGP_CASTEiJ_T0023158.1 MGP_CASTEiJ_G0016209.1 mouse_genomes_project 1 184459280 184473838 - MGP_CASTEiJ_P0023158 Coq8a protein_coding protein_coding MGP_CASTEiJ_T0005739.1 MGP_CASTEiJ_G0004824.1 mouse_genomes_project 1 131784272 131797503 - lincRNA lincRNA MGP_CASTEiJ_T0000447.1 MGP_CASTEiJ_G0000393.1 mouse_genomes_project 1 58759587 58763041 + TEC TEC MGP_CASTEiJ_T0021944.1 MGP_CASTEiJ_G0015940.1 mouse_genomes_project 1 155848421 155915639 - MGP_CASTEiJ_P0021944 Lamc2 protein_coding protein_coding MGP_CASTEiJ_T0021945.1 MGP_CASTEiJ_G0015940.1 mouse_genomes_project 1 155848421 155915239 - MGP_CASTEiJ_P0021945 Lamc2 protein_coding protein_coding MGP_CASTEiJ_T0021946.1 MGP_CASTEiJ_G0015940.1 mouse_genomes_project 1 155849841 155852925 - Lamc2 protein_coding retained_intron MGP_CASTEiJ_T0021947.1 MGP_CASTEiJ_G0015940.1 mouse_genomes_project 1 155851790 155854703 - MGP_CASTEiJ_P0021947 Lamc2 protein_coding protein_coding MGP_CASTEiJ_T0021948.1 MGP_CASTEiJ_G0015940.1 mouse_genomes_project 1 155875548 155877450 - Lamc2 protein_coding retained_intron MGP_CASTEiJ_T0021949.1 MGP_CASTEiJ_G0015940.1 mouse_genomes_project 1 155882687 155915639 - Lamc2 protein_coding retained_intron MGP_CASTEiJ_T0020076.1 MGP_CASTEiJ_G0015548.1 mouse_genomes_project 1 77099828 77250640 - MGP_CASTEiJ_P0020076 Epha4 protein_coding protein_coding MGP_CASTEiJ_T0020077.1 MGP_CASTEiJ_G0015548.1 mouse_genomes_project 1 77099832 77250631 - MGP_CASTEiJ_P0020077 Epha4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020078.1 MGP_CASTEiJ_G0015548.1 mouse_genomes_project 1 77105853 77250640 - MGP_CASTEiJ_P0020078 Epha4 protein_coding protein_coding MGP_CASTEiJ_T0020079.1 MGP_CASTEiJ_G0015548.1 mouse_genomes_project 1 77106332 77110279 - MGP_CASTEiJ_P0020079 Epha4 protein_coding protein_coding MGP_CASTEiJ_T0020080.1 MGP_CASTEiJ_G0015548.1 mouse_genomes_project 1 77106350 77250631 - MGP_CASTEiJ_P0020080 Epha4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020081.1 MGP_CASTEiJ_G0015548.1 mouse_genomes_project 1 77130440 77250637 - Epha4 protein_coding retained_intron MGP_CASTEiJ_T0020082.1 MGP_CASTEiJ_G0015548.1 mouse_genomes_project 1 77134837 77250635 - MGP_CASTEiJ_P0020082 Epha4 protein_coding protein_coding MGP_CASTEiJ_T0011710.1 MGP_CASTEiJ_G0009873.1 mouse_genomes_project 1 51252298 51252760 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011739.1 MGP_CASTEiJ_G0009902.1 mouse_genomes_project 1 59828898 59829205 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018862.1 MGP_CASTEiJ_G0015331.1 mouse_genomes_project 1 41733455 41776560 - MGP_CASTEiJ_P0018862 Fhl2 protein_coding protein_coding MGP_CASTEiJ_T0018863.1 MGP_CASTEiJ_G0015331.1 mouse_genomes_project 1 41733671 41811311 - MGP_CASTEiJ_P0018863 Fhl2 protein_coding protein_coding MGP_CASTEiJ_T0018864.1 MGP_CASTEiJ_G0015331.1 mouse_genomes_project 1 41744213 41811085 - MGP_CASTEiJ_P0018864 Fhl2 protein_coding protein_coding MGP_CASTEiJ_T0009308.1 MGP_CASTEiJ_G0007496.1 mouse_genomes_project 1 175284848 175284909 - Mir7683 miRNA miRNA MGP_CASTEiJ_T0011820.1 MGP_CASTEiJ_G0009983.1 mouse_genomes_project 1 97602476 97603440 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023406.1 MGP_CASTEiJ_G0016265.1 mouse_genomes_project 1 191670931 191674143 + MGP_CASTEiJ_P0023406 D1Pas1 protein_coding protein_coding MGP_CASTEiJ_T0005829.1 MGP_CASTEiJ_G0004897.1 mouse_genomes_project 1 173636744 173640541 - Gm37502 lincRNA lincRNA MGP_CASTEiJ_T0011826.1 MGP_CASTEiJ_G0009989.1 mouse_genomes_project 1 100507408 100507967 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101481.1 MGP_CASTEiJ_G0038394.1 mouse_genomes_project 1 32461574 32465568 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101482.1 MGP_CASTEiJ_G0038394.1 mouse_genomes_project 1 32465452 32467262 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0011558.1 MGP_CASTEiJ_G0009721.1 mouse_genomes_project 1 2881686 2882080 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022625.1 MGP_CASTEiJ_G0016072.1 mouse_genomes_project 1 173695234 173718470 + MGP_CASTEiJ_P0022625 Sh2d1b2 protein_coding protein_coding MGP_CASTEiJ_T0002813.1 MGP_CASTEiJ_G0002658.1 mouse_genomes_project 1 156526328 156532754 - Gm28513 antisense antisense MGP_CASTEiJ_T0100318.1 MGP_CASTEiJ_G0037231.1 mouse_genomes_project 1 150832601 150832730 - Gm22966 snoRNA snoRNA MGP_CASTEiJ_T0021572.1 MGP_CASTEiJ_G0015871.1 mouse_genomes_project 1 136984122 137027093 + MGP_CASTEiJ_P0021572 Lmod1 protein_coding protein_coding MGP_CASTEiJ_T0021573.1 MGP_CASTEiJ_G0015871.1 mouse_genomes_project 1 136984384 137041666 + MGP_CASTEiJ_P0021573 Lmod1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002680.1 MGP_CASTEiJ_G0002558.1 mouse_genomes_project 1 35832540 35833654 + 4930556I23Rik antisense antisense MGP_CASTEiJ_T0018770.1 MGP_CASTEiJ_G0015309.1 mouse_genomes_project 1 37678699 37788740 - MGP_CASTEiJ_P0018770 Tbc1d8 protein_coding protein_coding MGP_CASTEiJ_T0018771.1 MGP_CASTEiJ_G0015309.1 mouse_genomes_project 1 37679074 37679641 - MGP_CASTEiJ_P0018771 Tbc1d8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018772.1 MGP_CASTEiJ_G0015309.1 mouse_genomes_project 1 37679503 37788646 - MGP_CASTEiJ_P0018772 Tbc1d8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018773.1 MGP_CASTEiJ_G0015309.1 mouse_genomes_project 1 37680523 37788685 - MGP_CASTEiJ_P0018773 Tbc1d8 protein_coding protein_coding MGP_CASTEiJ_T0018774.1 MGP_CASTEiJ_G0015309.1 mouse_genomes_project 1 37698400 37699834 - Tbc1d8 protein_coding retained_intron MGP_CASTEiJ_T0000729.1 MGP_CASTEiJ_G0000672.1 mouse_genomes_project 1 184789542 184793304 - TEC TEC MGP_CASTEiJ_T0100322.1 MGP_CASTEiJ_G0037235.1 mouse_genomes_project 1 163778967 163779099 + Gm23528 snoRNA snoRNA MGP_CASTEiJ_T0100274.1 MGP_CASTEiJ_G0037187.1 mouse_genomes_project 1 57009260 57009370 - Gm24548 snoRNA snoRNA MGP_CASTEiJ_T0023172.1 MGP_CASTEiJ_G0016211.1 mouse_genomes_project 1 184627377 184728349 + MGP_CASTEiJ_P0023172 Itpkb protein_coding protein_coding MGP_CASTEiJ_T0023173.1 MGP_CASTEiJ_G0016211.1 mouse_genomes_project 1 184630745 184635315 + Itpkb protein_coding retained_intron MGP_CASTEiJ_T0021416.1 MGP_CASTEiJ_G0015835.1 mouse_genomes_project 1 134871672 134888454 + MGP_CASTEiJ_P0021416 Etnk2 protein_coding protein_coding MGP_CASTEiJ_T0021417.1 MGP_CASTEiJ_G0015835.1 mouse_genomes_project 1 134871676 134883171 + Etnk2 protein_coding retained_intron MGP_CASTEiJ_T0021418.1 MGP_CASTEiJ_G0015835.1 mouse_genomes_project 1 134871948 134888442 + MGP_CASTEiJ_P0021418 Etnk2 protein_coding protein_coding MGP_CASTEiJ_T0021419.1 MGP_CASTEiJ_G0015835.1 mouse_genomes_project 1 134873836 134877251 + Etnk2 protein_coding retained_intron MGP_CASTEiJ_T0021420.1 MGP_CASTEiJ_G0015835.1 mouse_genomes_project 1 134875362 134885103 + Etnk2 protein_coding processed_transcript MGP_CASTEiJ_T0016256.1 MGP_CASTEiJ_G0014408.1 mouse_genomes_project 1 37866751 37871152 - Gm15832 processed_transcript processed_transcript MGP_CASTEiJ_T0011810.1 MGP_CASTEiJ_G0009973.1 mouse_genomes_project 1 91569814 91570534 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002705.1 MGP_CASTEiJ_G0002578.1 mouse_genomes_project 1 54009921 54019966 + Gm10561 antisense antisense MGP_CASTEiJ_T0005683.1 MGP_CASTEiJ_G0004780.1 mouse_genomes_project 1 93045035 93047316 + Gm28479 lincRNA lincRNA MGP_CASTEiJ_T0099089.1 MGP_CASTEiJ_G0036002.1 mouse_genomes_project 1 62435882 62435986 - Gm23448 snRNA snRNA MGP_CASTEiJ_T0023174.1 MGP_CASTEiJ_G0016212.1 mouse_genomes_project 1 184740824 184799668 - MGP_CASTEiJ_P0023174 Stum protein_coding protein_coding MGP_CASTEiJ_T0023175.1 MGP_CASTEiJ_G0016212.1 mouse_genomes_project 1 184749590 184799705 - MGP_CASTEiJ_P0023175 Stum protein_coding protein_coding MGP_CASTEiJ_T0100281.1 MGP_CASTEiJ_G0037194.1 mouse_genomes_project 1 62302996 62303074 + Gm26457 snoRNA snoRNA MGP_CASTEiJ_T0011616.1 MGP_CASTEiJ_G0009779.1 mouse_genomes_project 1 20430971 20431775 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021689.1 MGP_CASTEiJ_G0015893.1 mouse_genomes_project 1 138638435 138752768 - MGP_CASTEiJ_P0021689 Nr5a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021690.1 MGP_CASTEiJ_G0015893.1 mouse_genomes_project 1 138638435 138775650 - MGP_CASTEiJ_P0021690 Nr5a2 protein_coding protein_coding MGP_CASTEiJ_T0021691.1 MGP_CASTEiJ_G0015893.1 mouse_genomes_project 1 138641170 138752904 - MGP_CASTEiJ_P0021691 Nr5a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021692.1 MGP_CASTEiJ_G0015893.1 mouse_genomes_project 1 138641193 138775582 - MGP_CASTEiJ_P0021692 Nr5a2 protein_coding protein_coding MGP_CASTEiJ_T0021693.1 MGP_CASTEiJ_G0015893.1 mouse_genomes_project 1 138641342 138758674 - MGP_CASTEiJ_P0021693 Nr5a2 protein_coding protein_coding MGP_CASTEiJ_T0021694.1 MGP_CASTEiJ_G0015893.1 mouse_genomes_project 1 138688884 138744441 - Nr5a2 protein_coding retained_intron MGP_CASTEiJ_T0021695.1 MGP_CASTEiJ_G0015893.1 mouse_genomes_project 1 138744842 138754257 - MGP_CASTEiJ_P0021695 Nr5a2 protein_coding protein_coding MGP_CASTEiJ_T0020843.1 MGP_CASTEiJ_G0015712.1 mouse_genomes_project 1 100256931 101010212 + MGP_CASTEiJ_P0020843 Cntnap5b protein_coding protein_coding MGP_CASTEiJ_T0020844.1 MGP_CASTEiJ_G0015712.1 mouse_genomes_project 1 100608272 101011303 + MGP_CASTEiJ_P0020844 Cntnap5b protein_coding protein_coding MGP_CASTEiJ_T0020845.1 MGP_CASTEiJ_G0015712.1 mouse_genomes_project 1 100772806 100887277 + Cntnap5b protein_coding processed_transcript MGP_CASTEiJ_T0023192.1 MGP_CASTEiJ_G0016215.1 mouse_genomes_project 1 185014308 185020296 - MGP_CASTEiJ_P0023192 Mixl1 protein_coding protein_coding MGP_CASTEiJ_T0005612.1 MGP_CASTEiJ_G0004723.1 mouse_genomes_project 1 66526816 66604293 + Gm15668 lincRNA lincRNA MGP_CASTEiJ_T0000433.1 MGP_CASTEiJ_G0000379.1 mouse_genomes_project 1 46132930 46133837 + TEC TEC MGP_CASTEiJ_T0011658.1 MGP_CASTEiJ_G0009821.1 mouse_genomes_project 1 34765991 34766336 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020361.1 MGP_CASTEiJ_G0015609.1 mouse_genomes_project 1 87190971 87196066 + MGP_CASTEiJ_P0020361 Prss56 protein_coding protein_coding MGP_CASTEiJ_T0022582.1 MGP_CASTEiJ_G0016063.1 mouse_genomes_project 1 171514482 171845555 - MGP_CASTEiJ_P0022582 Pbx1 protein_coding protein_coding MGP_CASTEiJ_T0022583.1 MGP_CASTEiJ_G0016063.1 mouse_genomes_project 1 171550999 171845220 - MGP_CASTEiJ_P0022583 Pbx1 protein_coding protein_coding MGP_CASTEiJ_T0022584.1 MGP_CASTEiJ_G0016063.1 mouse_genomes_project 1 171555733 171845078 - MGP_CASTEiJ_P0022584 Pbx1 protein_coding protein_coding MGP_CASTEiJ_T0022585.1 MGP_CASTEiJ_G0016063.1 mouse_genomes_project 1 171555773 171562089 - Pbx1 protein_coding processed_transcript MGP_CASTEiJ_T0022586.1 MGP_CASTEiJ_G0016063.1 mouse_genomes_project 1 171556136 171844834 - MGP_CASTEiJ_P0022586 Pbx1 protein_coding protein_coding MGP_CASTEiJ_T0022587.1 MGP_CASTEiJ_G0016063.1 mouse_genomes_project 1 171576332 171645493 - MGP_CASTEiJ_P0022587 Pbx1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022588.1 MGP_CASTEiJ_G0016063.1 mouse_genomes_project 1 171580941 171845220 - MGP_CASTEiJ_P0022588 Pbx1 protein_coding protein_coding MGP_CASTEiJ_T0022589.1 MGP_CASTEiJ_G0016063.1 mouse_genomes_project 1 171605892 171844990 - Pbx1 protein_coding retained_intron MGP_CASTEiJ_T0022590.1 MGP_CASTEiJ_G0016063.1 mouse_genomes_project 1 171837758 171845220 - Pbx1 protein_coding retained_intron MGP_CASTEiJ_T0020802.1 MGP_CASTEiJ_G0015704.1 mouse_genomes_project 1 96175791 96258401 - MGP_CASTEiJ_P0020802 St8sia4 protein_coding protein_coding MGP_CASTEiJ_T0020803.1 MGP_CASTEiJ_G0015704.1 mouse_genomes_project 1 96206254 96258365 - MGP_CASTEiJ_P0020803 St8sia4 protein_coding protein_coding MGP_CASTEiJ_T0020804.1 MGP_CASTEiJ_G0015704.1 mouse_genomes_project 1 96249173 96258398 - St8sia4 protein_coding retained_intron MGP_CASTEiJ_T0020805.1 MGP_CASTEiJ_G0015704.1 mouse_genomes_project 1 96254811 96258395 - St8sia4 protein_coding retained_intron MGP_CASTEiJ_T0022713.1 MGP_CASTEiJ_G0016095.1 mouse_genomes_project 1 174789109 174801432 + MGP_CASTEiJ_P0022713 Adamts4 protein_coding protein_coding MGP_CASTEiJ_T0022714.1 MGP_CASTEiJ_G0016095.1 mouse_genomes_project 1 174790804 174801432 + MGP_CASTEiJ_P0022714 Adamts4 protein_coding protein_coding MGP_CASTEiJ_T0005531.1 MGP_CASTEiJ_G0004666.1 mouse_genomes_project 1 34002746 34003985 + 1110002O04Rik lincRNA lincRNA MGP_CASTEiJ_T0019497.1 MGP_CASTEiJ_G0015444.1 mouse_genomes_project 1 62882916 62916240 - MGP_CASTEiJ_P0019497 Mdh1b protein_coding protein_coding MGP_CASTEiJ_T0000651.1 MGP_CASTEiJ_G0000595.1 mouse_genomes_project 1 156496870 156498787 + TEC TEC MGP_CASTEiJ_T0018833.1 MGP_CASTEiJ_G0015323.1 mouse_genomes_project 1 39050114 39141225 + MGP_CASTEiJ_P0018833 Slc9a2 protein_coding protein_coding MGP_CASTEiJ_T0018834.1 MGP_CASTEiJ_G0015323.1 mouse_genomes_project 1 39051130 39097424 + MGP_CASTEiJ_P0018834 Slc9a2 protein_coding protein_coding MGP_CASTEiJ_T0018835.1 MGP_CASTEiJ_G0015323.1 mouse_genomes_project 1 39127209 39128525 + Slc9a2 protein_coding retained_intron MGP_CASTEiJ_T0011574.1 MGP_CASTEiJ_G0009737.1 mouse_genomes_project 1 5762194 5762584 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005676.1 MGP_CASTEiJ_G0004773.1 mouse_genomes_project 1 91367205 91368007 - Gm28199 lincRNA lincRNA MGP_CASTEiJ_T0011756.1 MGP_CASTEiJ_G0009919.1 mouse_genomes_project 1 63629922 63630140 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011672.1 MGP_CASTEiJ_G0009835.1 mouse_genomes_project 1 43493851 43494292 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098793.1 MGP_CASTEiJ_G0035723.1 mouse_genomes_project 1 92255765 92257238 + Gm29101 sense_intronic sense_intronic MGP_CASTEiJ_T0000459.1 MGP_CASTEiJ_G0000405.1 mouse_genomes_project 1 60857302 60858222 + TEC TEC MGP_CASTEiJ_T0011545.1 MGP_CASTEiJ_G0009708.1 mouse_genomes_project 1 449831 450312 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022272.1 MGP_CASTEiJ_G0015995.1 mouse_genomes_project 1 164256732 164301891 - Klhl20 protein_coding retained_intron MGP_CASTEiJ_T0022273.1 MGP_CASTEiJ_G0015995.1 mouse_genomes_project 1 164256732 164301891 - MGP_CASTEiJ_P0022273 Klhl20 protein_coding protein_coding MGP_CASTEiJ_T0022274.1 MGP_CASTEiJ_G0015995.1 mouse_genomes_project 1 164256737 164301808 - MGP_CASTEiJ_P0022274 Klhl20 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022275.1 MGP_CASTEiJ_G0015995.1 mouse_genomes_project 1 164256755 164263987 - MGP_CASTEiJ_P0022275 Klhl20 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022276.1 MGP_CASTEiJ_G0015995.1 mouse_genomes_project 1 164264806 164301891 - Klhl20 protein_coding retained_intron MGP_CASTEiJ_T0022277.1 MGP_CASTEiJ_G0015995.1 mouse_genomes_project 1 164268184 164273936 - Klhl20 protein_coding retained_intron MGP_CASTEiJ_T0022278.1 MGP_CASTEiJ_G0015995.1 mouse_genomes_project 1 164276491 164301822 - Klhl20 protein_coding retained_intron MGP_CASTEiJ_T0002801.1 MGP_CASTEiJ_G0002649.1 mouse_genomes_project 1 140393363 140428038 + Gm28501 antisense antisense MGP_CASTEiJ_T0018305.1 MGP_CASTEiJ_G0015215.1 mouse_genomes_project 1 15189446 15230104 + MGP_CASTEiJ_P0018305 Crispld1 protein_coding protein_coding MGP_CASTEiJ_T0018306.1 MGP_CASTEiJ_G0015215.1 mouse_genomes_project 1 15189460 15208808 + MGP_CASTEiJ_P0018306 Crispld1 protein_coding protein_coding MGP_CASTEiJ_T0018307.1 MGP_CASTEiJ_G0015215.1 mouse_genomes_project 1 15189489 15230875 + MGP_CASTEiJ_P0018307 Crispld1 protein_coding protein_coding MGP_CASTEiJ_T0005519.1 MGP_CASTEiJ_G0004655.1 mouse_genomes_project 1 22776304 22776956 - Gm29414 lincRNA lincRNA MGP_CASTEiJ_T0019541.1 MGP_CASTEiJ_G0015456.1 mouse_genomes_project 1 64274341 64276517 - MGP_CASTEiJ_P0019541 Crygc protein_coding protein_coding MGP_CASTEiJ_T0019542.1 MGP_CASTEiJ_G0015456.1 mouse_genomes_project 1 64274347 64276349 - MGP_CASTEiJ_P0019542 Crygc protein_coding protein_coding MGP_CASTEiJ_T0018581.1 MGP_CASTEiJ_G0015275.1 mouse_genomes_project 1 34575682 34595463 - MGP_CASTEiJ_P0018581 Lman2l protein_coding protein_coding MGP_CASTEiJ_T0018582.1 MGP_CASTEiJ_G0015275.1 mouse_genomes_project 1 34577875 34601041 - MGP_CASTEiJ_P0018582 Lman2l protein_coding protein_coding MGP_CASTEiJ_T0018583.1 MGP_CASTEiJ_G0015275.1 mouse_genomes_project 1 34578997 34597638 - Lman2l protein_coding retained_intron MGP_CASTEiJ_T0018584.1 MGP_CASTEiJ_G0015275.1 mouse_genomes_project 1 34578997 34601041 - MGP_CASTEiJ_P0018584 Lman2l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018585.1 MGP_CASTEiJ_G0015275.1 mouse_genomes_project 1 34578997 34601041 - MGP_CASTEiJ_P0018585 Lman2l protein_coding protein_coding MGP_CASTEiJ_T0018586.1 MGP_CASTEiJ_G0015275.1 mouse_genomes_project 1 34580343 34584189 - MGP_CASTEiJ_P0018586 Lman2l protein_coding protein_coding MGP_CASTEiJ_T0018587.1 MGP_CASTEiJ_G0015275.1 mouse_genomes_project 1 34584214 34601041 - MGP_CASTEiJ_P0018587 Lman2l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018588.1 MGP_CASTEiJ_G0015275.1 mouse_genomes_project 1 34599514 34601027 - Lman2l protein_coding retained_intron MGP_CASTEiJ_T0022649.1 MGP_CASTEiJ_G0016080.1 mouse_genomes_project 1 174394012 174394830 + MGP_CASTEiJ_P0022649 protein_coding protein_coding MGP_CASTEiJ_T0101946.1 MGP_CASTEiJ_G0038671.1 mouse_genomes_project 1 177857127 177860794 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0016261.1 MGP_CASTEiJ_G0014411.1 mouse_genomes_project 1 43057112 43058751 + Gm28893 processed_transcript processed_transcript MGP_CASTEiJ_T0011800.1 MGP_CASTEiJ_G0009963.1 mouse_genomes_project 1 84183600 84184145 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012017.1 MGP_CASTEiJ_G0010180.1 mouse_genomes_project 1 188409522 188409669 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100311.1 MGP_CASTEiJ_G0037224.1 mouse_genomes_project 1 134275291 134275412 - Gm22609 snoRNA snoRNA MGP_CASTEiJ_T0018841.1 MGP_CASTEiJ_G0015327.1 mouse_genomes_project 1 41449211 41504984 + MGP_CASTEiJ_P0018841 Mrps9 protein_coding protein_coding MGP_CASTEiJ_T0018842.1 MGP_CASTEiJ_G0015327.1 mouse_genomes_project 1 41449213 41500915 + Mrps9 protein_coding processed_transcript MGP_CASTEiJ_T0018843.1 MGP_CASTEiJ_G0015327.1 mouse_genomes_project 1 41449213 41498579 + Mrps9 protein_coding processed_transcript MGP_CASTEiJ_T0018844.1 MGP_CASTEiJ_G0015327.1 mouse_genomes_project 1 41449222 41481092 + Mrps9 protein_coding retained_intron MGP_CASTEiJ_T0018845.1 MGP_CASTEiJ_G0015327.1 mouse_genomes_project 1 41461696 41498031 + Mrps9 protein_coding retained_intron MGP_CASTEiJ_T0018846.1 MGP_CASTEiJ_G0015327.1 mouse_genomes_project 1 41486645 41504553 + MGP_CASTEiJ_P0018846 Mrps9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018847.1 MGP_CASTEiJ_G0015327.1 mouse_genomes_project 1 41501958 41504553 + Mrps9 protein_coding retained_intron MGP_CASTEiJ_T0000618.1 MGP_CASTEiJ_G0000562.1 mouse_genomes_project 1 139813859 139820648 + TEC TEC MGP_CASTEiJ_T0023545.1 MGP_CASTEiJ_G0016291.1 mouse_genomes_project 1 196730899 196799526 + MGP_CASTEiJ_P0023545 Lpgat1 protein_coding protein_coding MGP_CASTEiJ_T0023546.1 MGP_CASTEiJ_G0016291.1 mouse_genomes_project 1 196730899 196732463 + MGP_CASTEiJ_P0023546 Lpgat1 protein_coding protein_coding MGP_CASTEiJ_T0023547.1 MGP_CASTEiJ_G0016291.1 mouse_genomes_project 1 196731092 196732851 + Lpgat1 protein_coding retained_intron MGP_CASTEiJ_T0023548.1 MGP_CASTEiJ_G0016291.1 mouse_genomes_project 1 196731454 196795282 + MGP_CASTEiJ_P0023548 Lpgat1 protein_coding protein_coding MGP_CASTEiJ_T0023549.1 MGP_CASTEiJ_G0016291.1 mouse_genomes_project 1 196731586 196774886 + MGP_CASTEiJ_P0023549 Lpgat1 protein_coding protein_coding MGP_CASTEiJ_T0005767.1 MGP_CASTEiJ_G0004848.1 mouse_genomes_project 1 140555462 140566113 - lincRNA lincRNA MGP_CASTEiJ_T0018761.1 MGP_CASTEiJ_G0015306.1 mouse_genomes_project 1 37273326 37279805 + MGP_CASTEiJ_P0018761 Pdcl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018762.1 MGP_CASTEiJ_G0015306.1 mouse_genomes_project 1 37273329 37281165 + MGP_CASTEiJ_P0018762 Pdcl3 protein_coding protein_coding MGP_CASTEiJ_T0018763.1 MGP_CASTEiJ_G0015306.1 mouse_genomes_project 1 37280047 37281528 + Pdcl3 protein_coding retained_intron MGP_CASTEiJ_T0000766.1 MGP_CASTEiJ_G0000707.1 mouse_genomes_project 1 199726884 199728764 + TEC TEC MGP_CASTEiJ_T0005719.1 MGP_CASTEiJ_G0004809.1 mouse_genomes_project 1 121286226 121288871 + 1700012E03Rik lincRNA lincRNA MGP_CASTEiJ_T0000496.1 MGP_CASTEiJ_G0000442.1 mouse_genomes_project 1 80516254 80519800 - TEC TEC MGP_CASTEiJ_T0099063.1 MGP_CASTEiJ_G0035976.1 mouse_genomes_project 1 1001880 1001938 - Gm27396 snRNA snRNA MGP_CASTEiJ_T0019525.1 MGP_CASTEiJ_G0015451.1 mouse_genomes_project 1 63919498 63926694 - MGP_CASTEiJ_P0019525 Fzd5 protein_coding protein_coding MGP_CASTEiJ_T0019526.1 MGP_CASTEiJ_G0015451.1 mouse_genomes_project 1 63923411 63926692 - MGP_CASTEiJ_P0019526 Fzd5 protein_coding protein_coding MGP_CASTEiJ_T0020327.1 MGP_CASTEiJ_G0015598.1 mouse_genomes_project 1 86341978 86345196 - MGP_CASTEiJ_P0020327 Nmur1 protein_coding protein_coding MGP_CASTEiJ_T0000770.1 MGP_CASTEiJ_G0000711.1 mouse_genomes_project 1 200083500 200086207 + TEC TEC MGP_CASTEiJ_T0100247.1 MGP_CASTEiJ_G0037160.1 mouse_genomes_project 1 7266042 7266129 - Snord87 snoRNA snoRNA MGP_CASTEiJ_T0009232.1 MGP_CASTEiJ_G0007420.1 mouse_genomes_project 1 27339706 27339831 + Mir6342 miRNA miRNA MGP_CASTEiJ_T0011794.1 MGP_CASTEiJ_G0009957.1 mouse_genomes_project 1 82998833 82999968 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021489.1 MGP_CASTEiJ_G0015853.1 mouse_genomes_project 1 135921339 135939585 - MGP_CASTEiJ_P0021489 Tmem183a protein_coding protein_coding MGP_CASTEiJ_T0021490.1 MGP_CASTEiJ_G0015853.1 mouse_genomes_project 1 135922923 135939547 - MGP_CASTEiJ_P0021490 Tmem183a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021491.1 MGP_CASTEiJ_G0015853.1 mouse_genomes_project 1 135923151 135925061 - Tmem183a protein_coding retained_intron MGP_CASTEiJ_T0021492.1 MGP_CASTEiJ_G0015853.1 mouse_genomes_project 1 135930231 135939559 - Tmem183a protein_coding retained_intron MGP_CASTEiJ_T0021493.1 MGP_CASTEiJ_G0015853.1 mouse_genomes_project 1 135930503 135939296 - MGP_CASTEiJ_P0021493 Tmem183a protein_coding protein_coding MGP_CASTEiJ_T0020598.1 MGP_CASTEiJ_G0015660.1 mouse_genomes_project 1 91832133 91833880 - Hes6 protein_coding retained_intron MGP_CASTEiJ_T0020599.1 MGP_CASTEiJ_G0015660.1 mouse_genomes_project 1 91832133 91833866 - Hes6 protein_coding retained_intron MGP_CASTEiJ_T0020600.1 MGP_CASTEiJ_G0015660.1 mouse_genomes_project 1 91832133 91833880 - MGP_CASTEiJ_P0020600 Hes6 protein_coding protein_coding MGP_CASTEiJ_T0020601.1 MGP_CASTEiJ_G0015660.1 mouse_genomes_project 1 91832937 91833866 - Hes6 protein_coding retained_intron MGP_CASTEiJ_T0020602.1 MGP_CASTEiJ_G0015660.1 mouse_genomes_project 1 91832998 91834696 - Hes6 protein_coding processed_transcript MGP_CASTEiJ_T0022215.1 MGP_CASTEiJ_G0015987.1 mouse_genomes_project 1 163315341 163320132 + MGP_CASTEiJ_P0022215 Mrps14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022216.1 MGP_CASTEiJ_G0015987.1 mouse_genomes_project 1 163315341 163322481 + MGP_CASTEiJ_P0022216 Mrps14 protein_coding protein_coding MGP_CASTEiJ_T0022217.1 MGP_CASTEiJ_G0015987.1 mouse_genomes_project 1 163315429 163320124 + MGP_CASTEiJ_P0022217 Mrps14 protein_coding protein_coding MGP_CASTEiJ_T0021116.1 MGP_CASTEiJ_G0015771.1 mouse_genomes_project 1 128924831 128963078 + MGP_CASTEiJ_P0021116 Acmsd protein_coding protein_coding MGP_CASTEiJ_T0021117.1 MGP_CASTEiJ_G0015771.1 mouse_genomes_project 1 128951898 128963078 + Acmsd protein_coding processed_transcript MGP_CASTEiJ_T0023652.1 MGP_CASTEiJ_G0016309.1 mouse_genomes_project 1 199677432 199681114 + Plxna2 protein_coding retained_intron MGP_CASTEiJ_T0023653.1 MGP_CASTEiJ_G0016309.1 mouse_genomes_project 1 199680071 199879680 + MGP_CASTEiJ_P0023653 Plxna2 protein_coding protein_coding MGP_CASTEiJ_T0023654.1 MGP_CASTEiJ_G0016309.1 mouse_genomes_project 1 199705153 199717212 + Plxna2 protein_coding processed_transcript MGP_CASTEiJ_T0023655.1 MGP_CASTEiJ_G0016309.1 mouse_genomes_project 1 199823655 199848165 + MGP_CASTEiJ_P0023655 Plxna2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023656.1 MGP_CASTEiJ_G0016309.1 mouse_genomes_project 1 199866252 199877032 + Plxna2 protein_coding retained_intron MGP_CASTEiJ_T0005738.1 MGP_CASTEiJ_G0004823.1 mouse_genomes_project 1 131603275 131615696 - Gm16081 lincRNA lincRNA MGP_CASTEiJ_T0005762.1 MGP_CASTEiJ_G0004844.1 mouse_genomes_project 1 139777828 139781449 - Gm26979 lincRNA lincRNA MGP_CASTEiJ_T0000390.1 MGP_CASTEiJ_G0000337.1 mouse_genomes_project 1 23583682 23584904 + TEC TEC MGP_CASTEiJ_T0022956.1 MGP_CASTEiJ_G0016157.1 mouse_genomes_project 1 177531909 177549723 - MGP_CASTEiJ_P0022956 AI607873 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023078.1 MGP_CASTEiJ_G0016197.1 mouse_genomes_project 1 182483161 182497873 - MGP_CASTEiJ_P0023078 Hnrnpu protein_coding protein_coding MGP_CASTEiJ_T0023079.1 MGP_CASTEiJ_G0016197.1 mouse_genomes_project 1 182483650 182489129 - Hnrnpu protein_coding retained_intron MGP_CASTEiJ_T0023080.1 MGP_CASTEiJ_G0016197.1 mouse_genomes_project 1 182490679 182491740 - Hnrnpu protein_coding retained_intron MGP_CASTEiJ_T0023081.1 MGP_CASTEiJ_G0016197.1 mouse_genomes_project 1 182490916 182493243 - Hnrnpu protein_coding processed_transcript MGP_CASTEiJ_T0023082.1 MGP_CASTEiJ_G0016197.1 mouse_genomes_project 1 182494404 182495167 - Hnrnpu protein_coding retained_intron MGP_CASTEiJ_T0002696.1 MGP_CASTEiJ_G0002571.1 mouse_genomes_project 1 41700937 41702189 + 8430432A02Rik antisense antisense MGP_CASTEiJ_T0000694.1 MGP_CASTEiJ_G0000638.1 mouse_genomes_project 1 168901198 168902026 + TEC TEC MGP_CASTEiJ_T0020637.1 MGP_CASTEiJ_G0015668.1 mouse_genomes_project 1 93034541 93035623 + MGP_CASTEiJ_P0020637 Olfr1413 protein_coding protein_coding MGP_CASTEiJ_T0022965.1 MGP_CASTEiJ_G0016164.1 mouse_genomes_project 1 178012945 178019072 + MGP_CASTEiJ_P0022965 Olfr429 protein_coding protein_coding MGP_CASTEiJ_T0022966.1 MGP_CASTEiJ_G0016164.1 mouse_genomes_project 1 178018129 178019072 + MGP_CASTEiJ_P0022966 Olfr429 protein_coding protein_coding MGP_CASTEiJ_T0023370.1 MGP_CASTEiJ_G0016257.1 mouse_genomes_project 1 189788809 189880706 + MGP_CASTEiJ_P0023370 Rab3gap2 protein_coding protein_coding MGP_CASTEiJ_T0023371.1 MGP_CASTEiJ_G0016257.1 mouse_genomes_project 1 189788809 189878139 + MGP_CASTEiJ_P0023371 Rab3gap2 protein_coding protein_coding MGP_CASTEiJ_T0023372.1 MGP_CASTEiJ_G0016257.1 mouse_genomes_project 1 189788870 189791132 + Rab3gap2 protein_coding retained_intron MGP_CASTEiJ_T0023373.1 MGP_CASTEiJ_G0016257.1 mouse_genomes_project 1 189856732 189880691 + Rab3gap2 protein_coding retained_intron MGP_CASTEiJ_T0023374.1 MGP_CASTEiJ_G0016257.1 mouse_genomes_project 1 189856895 189878678 + Rab3gap2 protein_coding retained_intron MGP_CASTEiJ_T0023375.1 MGP_CASTEiJ_G0016257.1 mouse_genomes_project 1 189871728 189875649 + Rab3gap2 protein_coding retained_intron MGP_CASTEiJ_T0009298.1 MGP_CASTEiJ_G0007486.1 mouse_genomes_project 1 163416647 163416756 - Mir1927 miRNA miRNA MGP_CASTEiJ_T0018097.1 MGP_CASTEiJ_G0015177.1 mouse_genomes_project 1 6890738 6920177 + MGP_CASTEiJ_P0018097 3110035E14Rik protein_coding protein_coding MGP_CASTEiJ_T0011999.1 MGP_CASTEiJ_G0010162.1 mouse_genomes_project 1 180617850 180619157 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022844.1 MGP_CASTEiJ_G0016122.1 mouse_genomes_project 1 175787623 175796707 + MGP_CASTEiJ_P0022844 Pex19 protein_coding protein_coding MGP_CASTEiJ_T0022845.1 MGP_CASTEiJ_G0016122.1 mouse_genomes_project 1 175787624 175791860 + Pex19 protein_coding retained_intron MGP_CASTEiJ_T0022846.1 MGP_CASTEiJ_G0016122.1 mouse_genomes_project 1 175787630 175797914 + MGP_CASTEiJ_P0022846 Pex19 protein_coding protein_coding MGP_CASTEiJ_T0022847.1 MGP_CASTEiJ_G0016122.1 mouse_genomes_project 1 175787641 175791055 + Pex19 protein_coding retained_intron MGP_CASTEiJ_T0022848.1 MGP_CASTEiJ_G0016122.1 mouse_genomes_project 1 175787641 175789787 + Pex19 protein_coding retained_intron MGP_CASTEiJ_T0022849.1 MGP_CASTEiJ_G0016122.1 mouse_genomes_project 1 175795380 175796124 + Pex19 protein_coding retained_intron MGP_CASTEiJ_T0011880.1 MGP_CASTEiJ_G0010043.1 mouse_genomes_project 1 120705452 120706116 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000472.1 MGP_CASTEiJ_G0000418.1 mouse_genomes_project 1 67387996 67389342 - TEC TEC MGP_CASTEiJ_T0009225.1 MGP_CASTEiJ_G0007413.1 mouse_genomes_project 1 10670693 10670775 + Gm27881 miRNA miRNA MGP_CASTEiJ_T0023300.1 MGP_CASTEiJ_G0016240.1 mouse_genomes_project 1 187240045 187242103 - MGP_CASTEiJ_P0023300 Ccdc185 protein_coding protein_coding MGP_CASTEiJ_T0021024.1 MGP_CASTEiJ_G0015752.1 mouse_genomes_project 1 120892634 120901864 - MGP_CASTEiJ_P0021024 Tmem37 protein_coding protein_coding MGP_CASTEiJ_T0100342.1 MGP_CASTEiJ_G0037255.1 mouse_genomes_project 1 193440574 193440705 - Gm25095 snoRNA snoRNA MGP_CASTEiJ_T0000566.1 MGP_CASTEiJ_G0000512.1 mouse_genomes_project 1 124470283 124471782 - TEC TEC MGP_CASTEiJ_T0099112.1 MGP_CASTEiJ_G0036025.1 mouse_genomes_project 1 125575074 125575178 + Gm25578 snRNA snRNA MGP_CASTEiJ_T0020791.1 MGP_CASTEiJ_G0015700.1 mouse_genomes_project 1 94357243 94358781 + MGP_CASTEiJ_P0020791 protein_coding protein_coding MGP_CASTEiJ_T0020792.1 MGP_CASTEiJ_G0015700.1 mouse_genomes_project 1 94357574 94387728 + MGP_CASTEiJ_P0020792 protein_coding protein_coding MGP_CASTEiJ_T0020793.1 MGP_CASTEiJ_G0015700.1 mouse_genomes_project 1 94357608 94387728 + MGP_CASTEiJ_P0020793 protein_coding protein_coding MGP_CASTEiJ_T0020794.1 MGP_CASTEiJ_G0015700.1 mouse_genomes_project 1 94358605 94515380 + protein_coding processed_transcript MGP_CASTEiJ_T0020795.1 MGP_CASTEiJ_G0015700.1 mouse_genomes_project 1 94358629 94385966 + MGP_CASTEiJ_P0020795 protein_coding unknown_likely_coding MGP_CASTEiJ_T0000657.1 MGP_CASTEiJ_G0000601.1 mouse_genomes_project 1 159153888 159154531 - TEC TEC MGP_CASTEiJ_T0101960.1 MGP_CASTEiJ_G0038685.1 mouse_genomes_project 1 185838504 185839181 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100334.1 MGP_CASTEiJ_G0037247.1 mouse_genomes_project 1 166310104 166310238 - Gm22671 snoRNA snoRNA MGP_CASTEiJ_T0020686.1 MGP_CASTEiJ_G0015681.1 mouse_genomes_project 1 93495634 93505637 + MGP_CASTEiJ_P0020686 Aqp12 protein_coding protein_coding MGP_CASTEiJ_T0099080.1 MGP_CASTEiJ_G0035993.1 mouse_genomes_project 1 32005856 32005949 - Gm23792 snRNA snRNA MGP_CASTEiJ_T0018742.1 MGP_CASTEiJ_G0015302.1 mouse_genomes_project 1 36411383 36891587 - MGP_CASTEiJ_P0018742 Aff3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0018743.1 MGP_CASTEiJ_G0015302.1 mouse_genomes_project 1 36414678 36891631 - MGP_CASTEiJ_P0018743 Aff3 protein_coding protein_coding MGP_CASTEiJ_T0018744.1 MGP_CASTEiJ_G0015302.1 mouse_genomes_project 1 36414679 36932001 - MGP_CASTEiJ_P0018744 Aff3 protein_coding protein_coding MGP_CASTEiJ_T0018745.1 MGP_CASTEiJ_G0015302.1 mouse_genomes_project 1 36418614 36439440 - Aff3 protein_coding processed_transcript MGP_CASTEiJ_T0018746.1 MGP_CASTEiJ_G0015302.1 mouse_genomes_project 1 36580290 36932001 - Aff3 protein_coding processed_transcript MGP_CASTEiJ_T0018747.1 MGP_CASTEiJ_G0015302.1 mouse_genomes_project 1 36792234 36932001 - MGP_CASTEiJ_P0018747 Aff3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0100294.1 MGP_CASTEiJ_G0037207.1 mouse_genomes_project 1 95596488 95596598 - Gm23181 snoRNA snoRNA MGP_CASTEiJ_T0023083.1 MGP_CASTEiJ_G0016198.1 mouse_genomes_project 1 182571629 182606498 + Efcab2 protein_coding processed_transcript MGP_CASTEiJ_T0023084.1 MGP_CASTEiJ_G0016198.1 mouse_genomes_project 1 182571647 182669685 + MGP_CASTEiJ_P0023084 Efcab2 protein_coding protein_coding MGP_CASTEiJ_T0023085.1 MGP_CASTEiJ_G0016198.1 mouse_genomes_project 1 182621302 182666646 + Efcab2 protein_coding processed_transcript MGP_CASTEiJ_T0011765.1 MGP_CASTEiJ_G0009928.1 mouse_genomes_project 1 65280116 65280526 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005515.1 MGP_CASTEiJ_G0004652.1 mouse_genomes_project 1 21012931 21014212 + lincRNA lincRNA MGP_CASTEiJ_T0002818.1 MGP_CASTEiJ_G0002663.1 mouse_genomes_project 1 160427418 160442253 - Gm15486 antisense antisense MGP_CASTEiJ_T0011926.1 MGP_CASTEiJ_G0010089.1 mouse_genomes_project 1 147554567 147555560 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000636.1 MGP_CASTEiJ_G0000580.1 mouse_genomes_project 1 149563685 149565582 + TEC TEC MGP_CASTEiJ_T0098440.1 MGP_CASTEiJ_G0035371.1 mouse_genomes_project 1 164750164 164750282 - Gm25488 rRNA rRNA MGP_CASTEiJ_T0005675.1 MGP_CASTEiJ_G0004772.1 mouse_genomes_project 1 91044766 91049406 + Gm9991 lincRNA lincRNA MGP_CASTEiJ_T0005876.1 MGP_CASTEiJ_G0004932.1 mouse_genomes_project 1 190057482 190065979 - Gm2061 lincRNA lincRNA MGP_CASTEiJ_T0005702.1 MGP_CASTEiJ_G0004796.1 mouse_genomes_project 1 106996360 106998145 - A530053M12Rik lincRNA lincRNA MGP_CASTEiJ_T0005517.1 MGP_CASTEiJ_G0004654.1 mouse_genomes_project 1 22709831 22711599 - Gm28237 lincRNA lincRNA MGP_CASTEiJ_T0005518.1 MGP_CASTEiJ_G0004654.1 mouse_genomes_project 1 22710618 22711781 - Gm28237 lincRNA lincRNA MGP_CASTEiJ_T0020002.1 MGP_CASTEiJ_G0015539.1 mouse_genomes_project 1 75009383 75066957 + MGP_CASTEiJ_P0020002 Speg protein_coding protein_coding MGP_CASTEiJ_T0020003.1 MGP_CASTEiJ_G0015539.1 mouse_genomes_project 1 75016506 75022692 + MGP_CASTEiJ_P0020003 Speg protein_coding protein_coding MGP_CASTEiJ_T0020004.1 MGP_CASTEiJ_G0015539.1 mouse_genomes_project 1 75016506 75038877 + MGP_CASTEiJ_P0020004 Speg protein_coding protein_coding MGP_CASTEiJ_T0020005.1 MGP_CASTEiJ_G0015539.1 mouse_genomes_project 1 75016518 75017776 + Speg protein_coding retained_intron MGP_CASTEiJ_T0020006.1 MGP_CASTEiJ_G0015539.1 mouse_genomes_project 1 75016530 75022242 + MGP_CASTEiJ_P0020006 Speg protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020007.1 MGP_CASTEiJ_G0015539.1 mouse_genomes_project 1 75017948 75019324 + Speg protein_coding processed_transcript MGP_CASTEiJ_T0020008.1 MGP_CASTEiJ_G0015539.1 mouse_genomes_project 1 75019048 75022295 + Speg protein_coding retained_intron MGP_CASTEiJ_T0020009.1 MGP_CASTEiJ_G0015539.1 mouse_genomes_project 1 75019176 75026277 + MGP_CASTEiJ_P0020009 Speg protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020010.1 MGP_CASTEiJ_G0015539.1 mouse_genomes_project 1 75019860 75023451 + Speg protein_coding processed_transcript MGP_CASTEiJ_T0020011.1 MGP_CASTEiJ_G0015539.1 mouse_genomes_project 1 75019958 75066945 + MGP_CASTEiJ_P0020011 Speg protein_coding protein_coding MGP_CASTEiJ_T0020012.1 MGP_CASTEiJ_G0015539.1 mouse_genomes_project 1 75034399 75038302 + MGP_CASTEiJ_P0020012 Speg protein_coding protein_coding MGP_CASTEiJ_T0020013.1 MGP_CASTEiJ_G0015539.1 mouse_genomes_project 1 75034835 75038684 + MGP_CASTEiJ_P0020013 Speg protein_coding protein_coding MGP_CASTEiJ_T0020014.1 MGP_CASTEiJ_G0015539.1 mouse_genomes_project 1 75034950 75038876 + MGP_CASTEiJ_P0020014 Speg protein_coding protein_coding MGP_CASTEiJ_T0020015.1 MGP_CASTEiJ_G0015539.1 mouse_genomes_project 1 75035325 75038521 + MGP_CASTEiJ_P0020015 Speg protein_coding protein_coding MGP_CASTEiJ_T0020016.1 MGP_CASTEiJ_G0015539.1 mouse_genomes_project 1 75058314 75062252 + Speg protein_coding retained_intron MGP_CASTEiJ_T0098708.1 MGP_CASTEiJ_G0035639.1 mouse_genomes_project 1 44390271 44390470 + Gm23984 ribozyme ribozyme MGP_CASTEiJ_T0023407.1 MGP_CASTEiJ_G0016266.1 mouse_genomes_project 1 191757548 191935410 - MGP_CASTEiJ_P0023407 Spata17 protein_coding protein_coding MGP_CASTEiJ_T0023408.1 MGP_CASTEiJ_G0016266.1 mouse_genomes_project 1 191761348 191935391 - MGP_CASTEiJ_P0023408 Spata17 protein_coding protein_coding MGP_CASTEiJ_T0023409.1 MGP_CASTEiJ_G0016266.1 mouse_genomes_project 1 191824609 191857717 - MGP_CASTEiJ_P0023409 Spata17 protein_coding protein_coding MGP_CASTEiJ_T0023410.1 MGP_CASTEiJ_G0016266.1 mouse_genomes_project 1 191829403 191935382 - MGP_CASTEiJ_P0023410 Spata17 protein_coding protein_coding MGP_CASTEiJ_T0023411.1 MGP_CASTEiJ_G0016266.1 mouse_genomes_project 1 191849108 191857910 - MGP_CASTEiJ_P0023411 Spata17 protein_coding protein_coding MGP_CASTEiJ_T0023412.1 MGP_CASTEiJ_G0016266.1 mouse_genomes_project 1 191849108 191935366 - MGP_CASTEiJ_P0023412 Spata17 protein_coding protein_coding MGP_CASTEiJ_T0023413.1 MGP_CASTEiJ_G0016266.1 mouse_genomes_project 1 191849115 191857897 - Spata17 protein_coding processed_transcript MGP_CASTEiJ_T0023414.1 MGP_CASTEiJ_G0016266.1 mouse_genomes_project 1 191904021 191935391 - Spata17 protein_coding processed_transcript MGP_CASTEiJ_T0022921.1 MGP_CASTEiJ_G0016139.1 mouse_genomes_project 1 176325459 176327647 - MGP_CASTEiJ_P0022921 Dusp23 protein_coding protein_coding MGP_CASTEiJ_T0098802.1 MGP_CASTEiJ_G0035732.1 mouse_genomes_project 1 155592620 155594416 - Gm28791 sense_intronic sense_intronic MGP_CASTEiJ_T0023567.1 MGP_CASTEiJ_G0016296.1 mouse_genomes_project 1 197080631 197126277 - MGP_CASTEiJ_P0023567 Rcor3 protein_coding protein_coding MGP_CASTEiJ_T0023568.1 MGP_CASTEiJ_G0016296.1 mouse_genomes_project 1 197080841 197126268 - MGP_CASTEiJ_P0023568 Rcor3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023569.1 MGP_CASTEiJ_G0016296.1 mouse_genomes_project 1 197082666 197100387 - MGP_CASTEiJ_P0023569 Rcor3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023570.1 MGP_CASTEiJ_G0016296.1 mouse_genomes_project 1 197082893 197126129 - MGP_CASTEiJ_P0023570 Rcor3 protein_coding protein_coding MGP_CASTEiJ_T0023571.1 MGP_CASTEiJ_G0016296.1 mouse_genomes_project 1 197082989 197108496 - MGP_CASTEiJ_P0023571 Rcor3 protein_coding protein_coding MGP_CASTEiJ_T0023572.1 MGP_CASTEiJ_G0016296.1 mouse_genomes_project 1 197083470 197126158 - MGP_CASTEiJ_P0023572 Rcor3 protein_coding protein_coding MGP_CASTEiJ_T0023573.1 MGP_CASTEiJ_G0016296.1 mouse_genomes_project 1 197088268 197090934 - Rcor3 protein_coding retained_intron MGP_CASTEiJ_T0023574.1 MGP_CASTEiJ_G0016296.1 mouse_genomes_project 1 197112222 197115634 - Rcor3 protein_coding retained_intron MGP_CASTEiJ_T0023575.1 MGP_CASTEiJ_G0016296.1 mouse_genomes_project 1 197112366 197122979 - MGP_CASTEiJ_P0023575 Rcor3 protein_coding protein_coding MGP_CASTEiJ_T0023576.1 MGP_CASTEiJ_G0016296.1 mouse_genomes_project 1 197118573 197126272 - Rcor3 protein_coding retained_intron MGP_CASTEiJ_T0023577.1 MGP_CASTEiJ_G0016296.1 mouse_genomes_project 1 197121720 197126247 - Rcor3 protein_coding processed_transcript MGP_CASTEiJ_T0023578.1 MGP_CASTEiJ_G0016296.1 mouse_genomes_project 1 197122011 197126261 - Rcor3 protein_coding processed_transcript MGP_CASTEiJ_T0000546.1 MGP_CASTEiJ_G0000492.1 mouse_genomes_project 1 106452526 106456227 - TEC TEC MGP_CASTEiJ_T0098795.1 MGP_CASTEiJ_G0035725.1 mouse_genomes_project 1 132797926 132800353 - Gm29488 sense_intronic sense_intronic MGP_CASTEiJ_T0000469.1 MGP_CASTEiJ_G0000415.1 mouse_genomes_project 1 66043907 66046086 + TEC TEC MGP_CASTEiJ_T0021332.1 MGP_CASTEiJ_G0015817.1 mouse_genomes_project 1 133658902 133659596 - MGP_CASTEiJ_P0021332 Gm10188 protein_coding protein_coding MGP_CASTEiJ_T0021806.1 MGP_CASTEiJ_G0015915.1 mouse_genomes_project 1 146852125 146906020 - Rgs21 protein_coding processed_transcript MGP_CASTEiJ_T0021807.1 MGP_CASTEiJ_G0015915.1 mouse_genomes_project 1 146854080 146888727 - MGP_CASTEiJ_P0021807 Rgs21 protein_coding protein_coding MGP_CASTEiJ_T0000471.1 MGP_CASTEiJ_G0000417.1 mouse_genomes_project 1 67185098 67187394 + TEC TEC MGP_CASTEiJ_T0005522.1 MGP_CASTEiJ_G0004658.1 mouse_genomes_project 1 28940115 29015743 - lincRNA lincRNA MGP_CASTEiJ_T0011940.1 MGP_CASTEiJ_G0010103.1 mouse_genomes_project 1 153074873 153075233 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021468.1 MGP_CASTEiJ_G0015848.1 mouse_genomes_project 1 135749250 135758351 + MGP_CASTEiJ_P0021468 Chil1 protein_coding protein_coding MGP_CASTEiJ_T0021469.1 MGP_CASTEiJ_G0015848.1 mouse_genomes_project 1 135749478 135758496 + MGP_CASTEiJ_P0021469 Chil1 protein_coding protein_coding MGP_CASTEiJ_T0021470.1 MGP_CASTEiJ_G0015848.1 mouse_genomes_project 1 135749478 135758344 + MGP_CASTEiJ_P0021470 Chil1 protein_coding protein_coding MGP_CASTEiJ_T0021471.1 MGP_CASTEiJ_G0015848.1 mouse_genomes_project 1 135749548 135754878 + MGP_CASTEiJ_P0021471 Chil1 protein_coding protein_coding MGP_CASTEiJ_T0021472.1 MGP_CASTEiJ_G0015848.1 mouse_genomes_project 1 135749555 135754888 + MGP_CASTEiJ_P0021472 Chil1 protein_coding protein_coding MGP_CASTEiJ_T0021473.1 MGP_CASTEiJ_G0015848.1 mouse_genomes_project 1 135749556 135755171 + Chil1 protein_coding retained_intron MGP_CASTEiJ_T0021474.1 MGP_CASTEiJ_G0015848.1 mouse_genomes_project 1 135750883 135754947 + Chil1 protein_coding retained_intron MGP_CASTEiJ_T0021475.1 MGP_CASTEiJ_G0015848.1 mouse_genomes_project 1 135757443 135758342 + Chil1 protein_coding retained_intron MGP_CASTEiJ_T0005656.1 MGP_CASTEiJ_G0004754.1 mouse_genomes_project 1 82766714 82767248 + Gm28942 lincRNA lincRNA MGP_CASTEiJ_T0000419.1 MGP_CASTEiJ_G0000365.1 mouse_genomes_project 1 37040738 37041240 + TEC TEC MGP_CASTEiJ_T0022279.1 MGP_CASTEiJ_G0015996.1 mouse_genomes_project 1 164313051 164334510 + MGP_CASTEiJ_P0022279 Ankrd45 protein_coding protein_coding MGP_CASTEiJ_T0022280.1 MGP_CASTEiJ_G0015996.1 mouse_genomes_project 1 164313072 164341461 + MGP_CASTEiJ_P0022280 Ankrd45 protein_coding protein_coding MGP_CASTEiJ_T0022281.1 MGP_CASTEiJ_G0015996.1 mouse_genomes_project 1 164313083 164338852 + MGP_CASTEiJ_P0022281 Ankrd45 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022282.1 MGP_CASTEiJ_G0015996.1 mouse_genomes_project 1 164313100 164335429 + MGP_CASTEiJ_P0022282 Ankrd45 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022283.1 MGP_CASTEiJ_G0015996.1 mouse_genomes_project 1 164313127 164335406 + MGP_CASTEiJ_P0022283 Ankrd45 protein_coding protein_coding MGP_CASTEiJ_T0101948.1 MGP_CASTEiJ_G0038673.1 mouse_genomes_project 1 177973700 177974244 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0023201.1 MGP_CASTEiJ_G0016218.1 mouse_genomes_project 1 185203913 185220727 + MGP_CASTEiJ_P0023201 Sde2 protein_coding protein_coding MGP_CASTEiJ_T0023202.1 MGP_CASTEiJ_G0016218.1 mouse_genomes_project 1 185214686 185218837 + Sde2 protein_coding retained_intron MGP_CASTEiJ_T0019444.1 MGP_CASTEiJ_G0015436.1 mouse_genomes_project 1 61789081 61825909 + Nrp2 protein_coding retained_intron MGP_CASTEiJ_T0019445.1 MGP_CASTEiJ_G0015436.1 mouse_genomes_project 1 61789081 61913504 + MGP_CASTEiJ_P0019445 Nrp2 protein_coding protein_coding MGP_CASTEiJ_T0019446.1 MGP_CASTEiJ_G0015436.1 mouse_genomes_project 1 61789081 61913504 + MGP_CASTEiJ_P0019446 Nrp2 protein_coding protein_coding MGP_CASTEiJ_T0019447.1 MGP_CASTEiJ_G0015436.1 mouse_genomes_project 1 61789498 61913504 + MGP_CASTEiJ_P0019447 Nrp2 protein_coding protein_coding MGP_CASTEiJ_T0019448.1 MGP_CASTEiJ_G0015436.1 mouse_genomes_project 1 61789498 61887734 + MGP_CASTEiJ_P0019448 Nrp2 protein_coding protein_coding MGP_CASTEiJ_T0019449.1 MGP_CASTEiJ_G0015436.1 mouse_genomes_project 1 61789498 61885430 + MGP_CASTEiJ_P0019449 Nrp2 protein_coding protein_coding MGP_CASTEiJ_T0019450.1 MGP_CASTEiJ_G0015436.1 mouse_genomes_project 1 61789498 61913504 + MGP_CASTEiJ_P0019450 Nrp2 protein_coding protein_coding MGP_CASTEiJ_T0002649.1 MGP_CASTEiJ_G0002537.1 mouse_genomes_project 1 7049535 7096804 + 1700034P13Rik antisense antisense MGP_CASTEiJ_T0002650.1 MGP_CASTEiJ_G0002537.1 mouse_genomes_project 1 7049843 7095930 + 1700034P13Rik antisense antisense MGP_CASTEiJ_T0002651.1 MGP_CASTEiJ_G0002537.1 mouse_genomes_project 1 7050368 7077628 + 1700034P13Rik antisense antisense MGP_CASTEiJ_T0002652.1 MGP_CASTEiJ_G0002537.1 mouse_genomes_project 1 7050474 7077467 + 1700034P13Rik antisense antisense MGP_CASTEiJ_T0018578.1 MGP_CASTEiJ_G0015274.1 mouse_genomes_project 1 34523928 34577918 + MGP_CASTEiJ_P0018578 Fer1l5 protein_coding protein_coding MGP_CASTEiJ_T0018579.1 MGP_CASTEiJ_G0015274.1 mouse_genomes_project 1 34536923 34559054 + MGP_CASTEiJ_P0018579 Fer1l5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018580.1 MGP_CASTEiJ_G0015274.1 mouse_genomes_project 1 34572700 34577921 + MGP_CASTEiJ_P0018580 Fer1l5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000501.1 MGP_CASTEiJ_G0000447.1 mouse_genomes_project 1 82290677 82293510 + TEC TEC MGP_CASTEiJ_T0100254.1 MGP_CASTEiJ_G0037167.1 mouse_genomes_project 1 14974394 14974505 + Gm25166 snoRNA snoRNA MGP_CASTEiJ_T0022460.1 MGP_CASTEiJ_G0016037.1 mouse_genomes_project 1 168595528 168646692 + MGP_CASTEiJ_P0022460 Gpr161 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022461.1 MGP_CASTEiJ_G0016037.1 mouse_genomes_project 1 168614997 168641731 + MGP_CASTEiJ_P0022461 Gpr161 protein_coding protein_coding MGP_CASTEiJ_T0022462.1 MGP_CASTEiJ_G0016037.1 mouse_genomes_project 1 168625356 168636026 + MGP_CASTEiJ_P0022462 Gpr161 protein_coding unknown_likely_coding MGP_CASTEiJ_T0011655.1 MGP_CASTEiJ_G0009818.1 mouse_genomes_project 1 33072083 33072511 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016263.1 MGP_CASTEiJ_G0014413.1 mouse_genomes_project 1 55811484 55816282 + 9130024F11Rik processed_transcript antisense MGP_CASTEiJ_T0016264.1 MGP_CASTEiJ_G0014413.1 mouse_genomes_project 1 55812565 55814697 + 9130024F11Rik processed_transcript antisense MGP_CASTEiJ_T0016265.1 MGP_CASTEiJ_G0014413.1 mouse_genomes_project 1 55812567 55887200 + 9130024F11Rik processed_transcript antisense MGP_CASTEiJ_T0016266.1 MGP_CASTEiJ_G0014413.1 mouse_genomes_project 1 55813419 55816278 + 9130024F11Rik processed_transcript TEC MGP_CASTEiJ_T0016267.1 MGP_CASTEiJ_G0014413.1 mouse_genomes_project 1 55885097 55894962 + 9130024F11Rik processed_transcript antisense MGP_CASTEiJ_T0018343.1 MGP_CASTEiJ_G0015228.1 mouse_genomes_project 1 18810415 18824691 + MGP_CASTEiJ_P0018343 Tmem14a protein_coding protein_coding MGP_CASTEiJ_T0018344.1 MGP_CASTEiJ_G0015228.1 mouse_genomes_project 1 18810502 18824688 + MGP_CASTEiJ_P0018344 Tmem14a protein_coding protein_coding MGP_CASTEiJ_T0100261.1 MGP_CASTEiJ_G0037174.1 mouse_genomes_project 1 24331847 24331953 + Gm24064 snoRNA snoRNA MGP_CASTEiJ_T0002670.1 MGP_CASTEiJ_G0002550.1 mouse_genomes_project 1 29058821 29077259 + Gm29128 antisense antisense MGP_CASTEiJ_T0018967.1 MGP_CASTEiJ_G0015352.1 mouse_genomes_project 1 45312270 45369562 - MGP_CASTEiJ_P0018967 Slc39a10 protein_coding protein_coding MGP_CASTEiJ_T0018968.1 MGP_CASTEiJ_G0015352.1 mouse_genomes_project 1 45330850 45349341 - Slc39a10 protein_coding retained_intron MGP_CASTEiJ_T0018969.1 MGP_CASTEiJ_G0015352.1 mouse_genomes_project 1 45349081 45410508 - MGP_CASTEiJ_P0018969 Slc39a10 protein_coding protein_coding MGP_CASTEiJ_T0018970.1 MGP_CASTEiJ_G0015352.1 mouse_genomes_project 1 45349179 45405743 - MGP_CASTEiJ_P0018970 Slc39a10 protein_coding protein_coding MGP_CASTEiJ_T0019273.1 MGP_CASTEiJ_G0015406.1 mouse_genomes_project 1 57394113 57455050 - MGP_CASTEiJ_P0019273 Fam126b protein_coding protein_coding MGP_CASTEiJ_T0019274.1 MGP_CASTEiJ_G0015406.1 mouse_genomes_project 1 57394113 57432877 - MGP_CASTEiJ_P0019274 Fam126b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019275.1 MGP_CASTEiJ_G0015406.1 mouse_genomes_project 1 57394113 57454993 - MGP_CASTEiJ_P0019275 Fam126b protein_coding protein_coding MGP_CASTEiJ_T0019276.1 MGP_CASTEiJ_G0015406.1 mouse_genomes_project 1 57395403 57454918 - MGP_CASTEiJ_P0019276 Fam126b protein_coding protein_coding MGP_CASTEiJ_T0019277.1 MGP_CASTEiJ_G0015406.1 mouse_genomes_project 1 57419420 57455002 - MGP_CASTEiJ_P0019277 Fam126b protein_coding protein_coding MGP_CASTEiJ_T0019278.1 MGP_CASTEiJ_G0015406.1 mouse_genomes_project 1 57424579 57454991 - Fam126b protein_coding processed_transcript MGP_CASTEiJ_T0019279.1 MGP_CASTEiJ_G0015406.1 mouse_genomes_project 1 57424606 57455004 - Fam126b protein_coding retained_intron MGP_CASTEiJ_T0019280.1 MGP_CASTEiJ_G0015406.1 mouse_genomes_project 1 57429349 57432128 - Fam126b protein_coding retained_intron MGP_CASTEiJ_T0019281.1 MGP_CASTEiJ_G0015406.1 mouse_genomes_project 1 57432525 57455024 - Fam126b protein_coding retained_intron MGP_CASTEiJ_T0011942.1 MGP_CASTEiJ_G0010105.1 mouse_genomes_project 1 153712222 153713483 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021234.1 MGP_CASTEiJ_G0015799.1 mouse_genomes_project 1 132550994 132555056 + Eif2d protein_coding retained_intron MGP_CASTEiJ_T0021235.1 MGP_CASTEiJ_G0015799.1 mouse_genomes_project 1 132550994 132569136 + MGP_CASTEiJ_P0021235 Eif2d protein_coding protein_coding MGP_CASTEiJ_T0021236.1 MGP_CASTEiJ_G0015799.1 mouse_genomes_project 1 132550994 132577770 + MGP_CASTEiJ_P0021236 Eif2d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021237.1 MGP_CASTEiJ_G0015799.1 mouse_genomes_project 1 132550994 132570377 + MGP_CASTEiJ_P0021237 Eif2d protein_coding protein_coding MGP_CASTEiJ_T0021238.1 MGP_CASTEiJ_G0015799.1 mouse_genomes_project 1 132550994 132578183 + MGP_CASTEiJ_P0021238 Eif2d protein_coding protein_coding MGP_CASTEiJ_T0021239.1 MGP_CASTEiJ_G0015799.1 mouse_genomes_project 1 132550994 132571751 + MGP_CASTEiJ_P0021239 Eif2d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021240.1 MGP_CASTEiJ_G0015799.1 mouse_genomes_project 1 132550994 132585457 + MGP_CASTEiJ_P0021240 Eif2d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021241.1 MGP_CASTEiJ_G0015799.1 mouse_genomes_project 1 132562026 132568407 + Eif2d protein_coding processed_transcript MGP_CASTEiJ_T0005570.1 MGP_CASTEiJ_G0004689.1 mouse_genomes_project 1 45698837 45701785 + lincRNA lincRNA MGP_CASTEiJ_T0000412.1 MGP_CASTEiJ_G0000358.1 mouse_genomes_project 1 35059665 35059808 - TEC TEC MGP_CASTEiJ_T0022406.1 MGP_CASTEiJ_G0016022.1 mouse_genomes_project 1 167247067 167249375 + MGP_CASTEiJ_P0022406 Mettl18 protein_coding protein_coding MGP_CASTEiJ_T0022407.1 MGP_CASTEiJ_G0016022.1 mouse_genomes_project 1 167247067 167249375 + MGP_CASTEiJ_P0022407 Mettl18 protein_coding protein_coding MGP_CASTEiJ_T0016359.1 MGP_CASTEiJ_G0014442.1 mouse_genomes_project 1 200043728 200091215 + A330023F24Rik processed_transcript lincRNA MGP_CASTEiJ_T0016360.1 MGP_CASTEiJ_G0014442.1 mouse_genomes_project 1 200043738 200097102 + A330023F24Rik processed_transcript retained_intron MGP_CASTEiJ_T0016361.1 MGP_CASTEiJ_G0014442.1 mouse_genomes_project 1 200087135 200106618 + A330023F24Rik processed_transcript lincRNA MGP_CASTEiJ_T0016362.1 MGP_CASTEiJ_G0014442.1 mouse_genomes_project 1 200093782 200107599 + A330023F24Rik processed_transcript retained_intron MGP_CASTEiJ_T0011928.1 MGP_CASTEiJ_G0010091.1 mouse_genomes_project 1 147706258 147706651 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011598.1 MGP_CASTEiJ_G0009761.1 mouse_genomes_project 1 14704528 14708202 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100257.1 MGP_CASTEiJ_G0037170.1 mouse_genomes_project 1 18405639 18405772 - Gm24723 snoRNA snoRNA MGP_CASTEiJ_T0000375.1 MGP_CASTEiJ_G0000322.1 mouse_genomes_project 1 23067573 23070103 - TEC TEC MGP_CASTEiJ_T0100315.1 MGP_CASTEiJ_G0037228.1 mouse_genomes_project 1 139582507 139582623 + Gm22727 snoRNA snoRNA MGP_CASTEiJ_T0021125.1 MGP_CASTEiJ_G0015773.1 mouse_genomes_project 1 129015960 129043262 - MGP_CASTEiJ_P0021125 protein_coding protein_coding MGP_CASTEiJ_T0021126.1 MGP_CASTEiJ_G0015773.1 mouse_genomes_project 1 129015969 129043262 - MGP_CASTEiJ_P0021126 protein_coding protein_coding MGP_CASTEiJ_T0021127.1 MGP_CASTEiJ_G0015773.1 mouse_genomes_project 1 129015969 129043262 - MGP_CASTEiJ_P0021127 protein_coding protein_coding MGP_CASTEiJ_T0021128.1 MGP_CASTEiJ_G0015773.1 mouse_genomes_project 1 129015978 129043262 - MGP_CASTEiJ_P0021128 protein_coding protein_coding MGP_CASTEiJ_T0021129.1 MGP_CASTEiJ_G0015773.1 mouse_genomes_project 1 129030604 129057228 - MGP_CASTEiJ_P0021129 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021130.1 MGP_CASTEiJ_G0015773.1 mouse_genomes_project 1 129043171 129057228 - MGP_CASTEiJ_P0021130 protein_coding unknown_likely_coding MGP_CASTEiJ_T0011640.1 MGP_CASTEiJ_G0009803.1 mouse_genomes_project 1 31315416 31316337 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099110.1 MGP_CASTEiJ_G0036023.1 mouse_genomes_project 1 120320344 120320448 + Gm25322 snRNA snRNA MGP_CASTEiJ_T0005574.1 MGP_CASTEiJ_G0004693.1 mouse_genomes_project 1 50145340 50146332 - 1700072G22Rik lincRNA lincRNA MGP_CASTEiJ_T0000738.1 MGP_CASTEiJ_G0000680.1 mouse_genomes_project 1 186952738 186956854 + TEC TEC MGP_CASTEiJ_T0018698.1 MGP_CASTEiJ_G0015294.1 mouse_genomes_project 1 36090720 36094326 + MGP_CASTEiJ_P0018698 Lipt1 protein_coding protein_coding MGP_CASTEiJ_T0018699.1 MGP_CASTEiJ_G0015294.1 mouse_genomes_project 1 36091188 36095211 + MGP_CASTEiJ_P0018699 Lipt1 protein_coding protein_coding MGP_CASTEiJ_T0018700.1 MGP_CASTEiJ_G0015294.1 mouse_genomes_project 1 36091356 36094443 + MGP_CASTEiJ_P0018700 Lipt1 protein_coding protein_coding MGP_CASTEiJ_T0018701.1 MGP_CASTEiJ_G0015294.1 mouse_genomes_project 1 36091544 36094537 + MGP_CASTEiJ_P0018701 Lipt1 protein_coding protein_coding MGP_CASTEiJ_T0022579.1 MGP_CASTEiJ_G0016060.1 mouse_genomes_project 1 170816492 170841560 - MGP_CASTEiJ_P0022579 Lrrc52 protein_coding protein_coding MGP_CASTEiJ_T0021483.1 MGP_CASTEiJ_G0015852.1 mouse_genomes_project 1 135867285 135919977 - MGP_CASTEiJ_P0021483 Ppfia4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021484.1 MGP_CASTEiJ_G0015852.1 mouse_genomes_project 1 135868673 135901484 - MGP_CASTEiJ_P0021484 Ppfia4 protein_coding protein_coding MGP_CASTEiJ_T0021485.1 MGP_CASTEiJ_G0015852.1 mouse_genomes_project 1 135868674 135876724 - Ppfia4 protein_coding processed_transcript MGP_CASTEiJ_T0021486.1 MGP_CASTEiJ_G0015852.1 mouse_genomes_project 1 135868678 135876686 - Ppfia4 protein_coding retained_intron MGP_CASTEiJ_T0021487.1 MGP_CASTEiJ_G0015852.1 mouse_genomes_project 1 135869390 135907223 - MGP_CASTEiJ_P0021487 Ppfia4 protein_coding protein_coding MGP_CASTEiJ_T0021488.1 MGP_CASTEiJ_G0015852.1 mouse_genomes_project 1 135870268 135884983 - Ppfia4 protein_coding retained_intron MGP_CASTEiJ_T0011838.1 MGP_CASTEiJ_G0010001.1 mouse_genomes_project 1 105165691 105166457 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011967.1 MGP_CASTEiJ_G0010130.1 mouse_genomes_project 1 164043733 164044198 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000460.1 MGP_CASTEiJ_G0000406.1 mouse_genomes_project 1 61325674 61328196 + TEC TEC MGP_CASTEiJ_T0000370.1 MGP_CASTEiJ_G0000317.1 mouse_genomes_project 1 21833834 21836628 + TEC TEC MGP_CASTEiJ_T0009315.1 MGP_CASTEiJ_G0007503.1 mouse_genomes_project 1 189379445 189379527 - Mir1981 miRNA miRNA MGP_CASTEiJ_T0023550.1 MGP_CASTEiJ_G0016292.1 mouse_genomes_project 1 196838548 196850210 + MGP_CASTEiJ_P0023550 Nek2 protein_coding protein_coding MGP_CASTEiJ_T0023551.1 MGP_CASTEiJ_G0016292.1 mouse_genomes_project 1 196838614 196845447 + Nek2 protein_coding retained_intron MGP_CASTEiJ_T0023552.1 MGP_CASTEiJ_G0016292.1 mouse_genomes_project 1 196838646 196848579 + MGP_CASTEiJ_P0023552 Nek2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023553.1 MGP_CASTEiJ_G0016292.1 mouse_genomes_project 1 196839286 196842982 + Nek2 protein_coding retained_intron MGP_CASTEiJ_T0023554.1 MGP_CASTEiJ_G0016292.1 mouse_genomes_project 1 196844304 196847143 + Nek2 protein_coding processed_transcript MGP_CASTEiJ_T0019694.1 MGP_CASTEiJ_G0015486.1 mouse_genomes_project 1 72108663 72125955 + Smarcal1 protein_coding retained_intron MGP_CASTEiJ_T0019695.1 MGP_CASTEiJ_G0015486.1 mouse_genomes_project 1 72108663 72122831 + Smarcal1 protein_coding retained_intron MGP_CASTEiJ_T0019696.1 MGP_CASTEiJ_G0015486.1 mouse_genomes_project 1 72108663 72154628 + Smarcal1 protein_coding retained_intron MGP_CASTEiJ_T0019697.1 MGP_CASTEiJ_G0015486.1 mouse_genomes_project 1 72108663 72160840 + MGP_CASTEiJ_P0019697 Smarcal1 protein_coding protein_coding MGP_CASTEiJ_T0019698.1 MGP_CASTEiJ_G0015486.1 mouse_genomes_project 1 72108663 72111405 + MGP_CASTEiJ_P0019698 Smarcal1 protein_coding protein_coding MGP_CASTEiJ_T0019699.1 MGP_CASTEiJ_G0015486.1 mouse_genomes_project 1 72108663 72122391 + MGP_CASTEiJ_P0019699 Smarcal1 protein_coding protein_coding MGP_CASTEiJ_T0019700.1 MGP_CASTEiJ_G0015486.1 mouse_genomes_project 1 72109027 72160840 + MGP_CASTEiJ_P0019700 Smarcal1 protein_coding protein_coding MGP_CASTEiJ_T0019701.1 MGP_CASTEiJ_G0015486.1 mouse_genomes_project 1 72111051 72154628 + Smarcal1 protein_coding retained_intron MGP_CASTEiJ_T0019702.1 MGP_CASTEiJ_G0015486.1 mouse_genomes_project 1 72145179 72156009 + Smarcal1 protein_coding retained_intron MGP_CASTEiJ_T0022500.1 MGP_CASTEiJ_G0016044.1 mouse_genomes_project 1 169099862 169184248 + MGP_CASTEiJ_P0022500 Cd247 protein_coding protein_coding MGP_CASTEiJ_T0022501.1 MGP_CASTEiJ_G0016044.1 mouse_genomes_project 1 169099862 169184248 + MGP_CASTEiJ_P0022501 Cd247 protein_coding protein_coding MGP_CASTEiJ_T0022502.1 MGP_CASTEiJ_G0016044.1 mouse_genomes_project 1 169099862 169184248 + MGP_CASTEiJ_P0022502 Cd247 protein_coding protein_coding MGP_CASTEiJ_T0022503.1 MGP_CASTEiJ_G0016044.1 mouse_genomes_project 1 169099870 169176020 + MGP_CASTEiJ_P0022503 Cd247 protein_coding protein_coding MGP_CASTEiJ_T0022504.1 MGP_CASTEiJ_G0016044.1 mouse_genomes_project 1 169099904 169180531 + MGP_CASTEiJ_P0022504 Cd247 protein_coding protein_coding MGP_CASTEiJ_T0022505.1 MGP_CASTEiJ_G0016044.1 mouse_genomes_project 1 169099946 169182189 + MGP_CASTEiJ_P0022505 Cd247 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022506.1 MGP_CASTEiJ_G0016044.1 mouse_genomes_project 1 169099946 169183344 + MGP_CASTEiJ_P0022506 Cd247 protein_coding protein_coding MGP_CASTEiJ_T0022507.1 MGP_CASTEiJ_G0016044.1 mouse_genomes_project 1 169170755 169175509 + Cd247 protein_coding retained_intron MGP_CASTEiJ_T0022508.1 MGP_CASTEiJ_G0016044.1 mouse_genomes_project 1 169177751 169190364 + Cd247 protein_coding processed_transcript MGP_CASTEiJ_T0002702.1 MGP_CASTEiJ_G0002576.1 mouse_genomes_project 1 51938763 51940337 + Gm28777 antisense antisense MGP_CASTEiJ_T0011895.1 MGP_CASTEiJ_G0010058.1 mouse_genomes_project 1 125703356 125703782 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023011.1 MGP_CASTEiJ_G0016183.1 mouse_genomes_project 1 179667669 179717937 + Wdr64 protein_coding processed_transcript MGP_CASTEiJ_T0023012.1 MGP_CASTEiJ_G0016183.1 mouse_genomes_project 1 179667669 179795150 + MGP_CASTEiJ_P0023012 Wdr64 protein_coding protein_coding MGP_CASTEiJ_T0023013.1 MGP_CASTEiJ_G0016183.1 mouse_genomes_project 1 179667669 179795150 + MGP_CASTEiJ_P0023013 Wdr64 protein_coding protein_coding MGP_CASTEiJ_T0023014.1 MGP_CASTEiJ_G0016183.1 mouse_genomes_project 1 179667865 179794782 + MGP_CASTEiJ_P0023014 Wdr64 protein_coding protein_coding MGP_CASTEiJ_T0023015.1 MGP_CASTEiJ_G0016183.1 mouse_genomes_project 1 179743928 179795147 + MGP_CASTEiJ_P0023015 Wdr64 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000707.1 MGP_CASTEiJ_G0000651.1 mouse_genomes_project 1 179926667 179928605 - TEC TEC MGP_CASTEiJ_T0023009.1 MGP_CASTEiJ_G0016181.1 mouse_genomes_project 1 179629073 179661788 - MGP_CASTEiJ_P0023009 Opn3 protein_coding protein_coding MGP_CASTEiJ_T0000521.1 MGP_CASTEiJ_G0000467.1 mouse_genomes_project 1 87044058 87046983 + TEC TEC MGP_CASTEiJ_T0011931.1 MGP_CASTEiJ_G0010094.1 mouse_genomes_project 1 150983515 150983822 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022690.1 MGP_CASTEiJ_G0016091.1 mouse_genomes_project 1 174752309 174758813 - MGP_CASTEiJ_P0022690 Tomm40l protein_coding protein_coding MGP_CASTEiJ_T0022691.1 MGP_CASTEiJ_G0016091.1 mouse_genomes_project 1 174754100 174758747 - MGP_CASTEiJ_P0022691 Tomm40l protein_coding protein_coding MGP_CASTEiJ_T0022692.1 MGP_CASTEiJ_G0016091.1 mouse_genomes_project 1 174754100 174758483 - MGP_CASTEiJ_P0022692 Tomm40l protein_coding protein_coding MGP_CASTEiJ_T0022693.1 MGP_CASTEiJ_G0016091.1 mouse_genomes_project 1 174754661 174758750 - MGP_CASTEiJ_P0022693 Tomm40l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022694.1 MGP_CASTEiJ_G0016091.1 mouse_genomes_project 1 174757125 174758759 - MGP_CASTEiJ_P0022694 Tomm40l protein_coding protein_coding MGP_CASTEiJ_T0022695.1 MGP_CASTEiJ_G0016091.1 mouse_genomes_project 1 174757196 174758743 - MGP_CASTEiJ_P0022695 Tomm40l protein_coding protein_coding MGP_CASTEiJ_T0022696.1 MGP_CASTEiJ_G0016091.1 mouse_genomes_project 1 174757385 174758731 - Tomm40l protein_coding processed_transcript MGP_CASTEiJ_T0022697.1 MGP_CASTEiJ_G0016091.1 mouse_genomes_project 1 174757478 174758795 - Tomm40l protein_coding retained_intron MGP_CASTEiJ_T0021095.1 MGP_CASTEiJ_G0015768.1 mouse_genomes_project 1 127036678 127990832 - MGP_CASTEiJ_P0021095 Nckap5 protein_coding protein_coding MGP_CASTEiJ_T0021096.1 MGP_CASTEiJ_G0015768.1 mouse_genomes_project 1 127036678 127990832 - MGP_CASTEiJ_P0021096 Nckap5 protein_coding protein_coding MGP_CASTEiJ_T0021097.1 MGP_CASTEiJ_G0015768.1 mouse_genomes_project 1 127036678 127612774 - MGP_CASTEiJ_P0021097 Nckap5 protein_coding protein_coding MGP_CASTEiJ_T0021098.1 MGP_CASTEiJ_G0015768.1 mouse_genomes_project 1 127036689 127653580 - MGP_CASTEiJ_P0021098 Nckap5 protein_coding protein_coding MGP_CASTEiJ_T0021099.1 MGP_CASTEiJ_G0015768.1 mouse_genomes_project 1 127037361 127090683 - Nckap5 protein_coding processed_transcript MGP_CASTEiJ_T0021100.1 MGP_CASTEiJ_G0015768.1 mouse_genomes_project 1 127037785 127609661 - MGP_CASTEiJ_P0021100 Nckap5 protein_coding protein_coding MGP_CASTEiJ_T0021101.1 MGP_CASTEiJ_G0015768.1 mouse_genomes_project 1 127038002 127153972 - MGP_CASTEiJ_P0021101 Nckap5 protein_coding protein_coding MGP_CASTEiJ_T0021102.1 MGP_CASTEiJ_G0015768.1 mouse_genomes_project 1 127158751 127167131 - Nckap5 protein_coding processed_transcript MGP_CASTEiJ_T0021103.1 MGP_CASTEiJ_G0015768.1 mouse_genomes_project 1 127414260 127990999 - MGP_CASTEiJ_P0021103 Nckap5 protein_coding protein_coding MGP_CASTEiJ_T0021104.1 MGP_CASTEiJ_G0015768.1 mouse_genomes_project 1 127414406 127906893 - MGP_CASTEiJ_P0021104 Nckap5 protein_coding protein_coding MGP_CASTEiJ_T0021105.1 MGP_CASTEiJ_G0015768.1 mouse_genomes_project 1 127699323 127906881 - Nckap5 protein_coding retained_intron MGP_CASTEiJ_T0021106.1 MGP_CASTEiJ_G0015768.1 mouse_genomes_project 1 127701819 127990681 - Nckap5 protein_coding retained_intron MGP_CASTEiJ_T0022379.1 MGP_CASTEiJ_G0016015.1 mouse_genomes_project 1 166275301 166348134 - MGP_CASTEiJ_P0022379 Mroh9 protein_coding protein_coding MGP_CASTEiJ_T0021903.1 MGP_CASTEiJ_G0015931.1 mouse_genomes_project 1 154489542 154745351 - MGP_CASTEiJ_P0021903 1700025G04Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021904.1 MGP_CASTEiJ_G0015931.1 mouse_genomes_project 1 154522003 154745506 - MGP_CASTEiJ_P0021904 1700025G04Rik protein_coding protein_coding MGP_CASTEiJ_T0021905.1 MGP_CASTEiJ_G0015931.1 mouse_genomes_project 1 154530252 154560255 - 1700025G04Rik protein_coding retained_intron MGP_CASTEiJ_T0021906.1 MGP_CASTEiJ_G0015931.1 mouse_genomes_project 1 154530589 154703595 - MGP_CASTEiJ_P0021906 1700025G04Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0005577.1 MGP_CASTEiJ_G0004695.1 mouse_genomes_project 1 50396863 50398881 - Gm28055 lincRNA lincRNA MGP_CASTEiJ_T0005578.1 MGP_CASTEiJ_G0004695.1 mouse_genomes_project 1 50398105 50443374 - Gm28055 lincRNA lincRNA MGP_CASTEiJ_T0010913.1 MGP_CASTEiJ_G0009101.1 mouse_genomes_project 1 36195693 36195930 + Gm23409 misc_RNA misc_RNA MGP_CASTEiJ_T0019351.1 MGP_CASTEiJ_G0015421.1 mouse_genomes_project 1 58625739 58633422 + Nop58 protein_coding processed_transcript MGP_CASTEiJ_T0019352.1 MGP_CASTEiJ_G0015421.1 mouse_genomes_project 1 58625745 58652986 + MGP_CASTEiJ_P0019352 Nop58 protein_coding protein_coding MGP_CASTEiJ_T0019353.1 MGP_CASTEiJ_G0015421.1 mouse_genomes_project 1 58625753 58637685 + MGP_CASTEiJ_P0019353 Nop58 protein_coding protein_coding MGP_CASTEiJ_T0019354.1 MGP_CASTEiJ_G0015421.1 mouse_genomes_project 1 58625771 58633443 + Nop58 protein_coding retained_intron MGP_CASTEiJ_T0019355.1 MGP_CASTEiJ_G0015421.1 mouse_genomes_project 1 58625774 58631745 + Nop58 protein_coding retained_intron MGP_CASTEiJ_T0019356.1 MGP_CASTEiJ_G0015421.1 mouse_genomes_project 1 58625777 58660550 + MGP_CASTEiJ_P0019356 Nop58 protein_coding protein_coding MGP_CASTEiJ_T0019357.1 MGP_CASTEiJ_G0015421.1 mouse_genomes_project 1 58625789 58637660 + MGP_CASTEiJ_P0019357 Nop58 protein_coding protein_coding MGP_CASTEiJ_T0019358.1 MGP_CASTEiJ_G0015421.1 mouse_genomes_project 1 58625822 58640023 + MGP_CASTEiJ_P0019358 Nop58 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019359.1 MGP_CASTEiJ_G0015421.1 mouse_genomes_project 1 58630933 58639987 + Nop58 protein_coding retained_intron MGP_CASTEiJ_T0019360.1 MGP_CASTEiJ_G0015421.1 mouse_genomes_project 1 58633199 58645737 + Nop58 protein_coding retained_intron MGP_CASTEiJ_T0019361.1 MGP_CASTEiJ_G0015421.1 mouse_genomes_project 1 58637634 58645689 + MGP_CASTEiJ_P0019361 Nop58 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019362.1 MGP_CASTEiJ_G0015421.1 mouse_genomes_project 1 58640016 58648555 + MGP_CASTEiJ_P0019362 Nop58 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019363.1 MGP_CASTEiJ_G0015421.1 mouse_genomes_project 1 58645686 58650589 + MGP_CASTEiJ_P0019363 Nop58 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019364.1 MGP_CASTEiJ_G0015421.1 mouse_genomes_project 1 58645725 58652755 + MGP_CASTEiJ_P0019364 Nop58 protein_coding protein_coding MGP_CASTEiJ_T0019365.1 MGP_CASTEiJ_G0015421.1 mouse_genomes_project 1 58646236 58652756 + MGP_CASTEiJ_P0019365 Nop58 protein_coding protein_coding MGP_CASTEiJ_T0020083.1 MGP_CASTEiJ_G0015549.1 mouse_genomes_project 1 77855150 77955740 - MGP_CASTEiJ_P0020083 Pax3 protein_coding protein_coding MGP_CASTEiJ_T0020084.1 MGP_CASTEiJ_G0015549.1 mouse_genomes_project 1 77855153 77956036 - MGP_CASTEiJ_P0020084 Pax3 protein_coding protein_coding MGP_CASTEiJ_T0020085.1 MGP_CASTEiJ_G0015549.1 mouse_genomes_project 1 77856621 78072849 - MGP_CASTEiJ_P0020085 Pax3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020086.1 MGP_CASTEiJ_G0015549.1 mouse_genomes_project 1 77942249 77956015 - Pax3 protein_coding processed_transcript MGP_CASTEiJ_T0016274.1 MGP_CASTEiJ_G0014417.1 mouse_genomes_project 1 74789752 74804778 - Gm29253 processed_transcript processed_transcript MGP_CASTEiJ_T0011747.1 MGP_CASTEiJ_G0009910.1 mouse_genomes_project 1 61044396 61044674 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021892.1 MGP_CASTEiJ_G0015929.1 mouse_genomes_project 1 154187710 154265012 + MGP_CASTEiJ_P0021892 Fam129a protein_coding protein_coding MGP_CASTEiJ_T0021893.1 MGP_CASTEiJ_G0015929.1 mouse_genomes_project 1 154187897 154351395 + MGP_CASTEiJ_P0021893 Fam129a protein_coding protein_coding MGP_CASTEiJ_T0021894.1 MGP_CASTEiJ_G0015929.1 mouse_genomes_project 1 154187976 154348794 + MGP_CASTEiJ_P0021894 Fam129a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021895.1 MGP_CASTEiJ_G0015929.1 mouse_genomes_project 1 154188020 154314963 + MGP_CASTEiJ_P0021895 Fam129a protein_coding protein_coding MGP_CASTEiJ_T0021896.1 MGP_CASTEiJ_G0015929.1 mouse_genomes_project 1 154299288 154348794 + Fam129a protein_coding processed_transcript MGP_CASTEiJ_T0011893.1 MGP_CASTEiJ_G0010056.1 mouse_genomes_project 1 124779875 124781060 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012008.1 MGP_CASTEiJ_G0010171.1 mouse_genomes_project 1 185424047 185424694 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099065.1 MGP_CASTEiJ_G0035978.1 mouse_genomes_project 1 1962720 1962823 - Gm25493 snRNA snRNA MGP_CASTEiJ_T0018447.1 MGP_CASTEiJ_G0015253.1 mouse_genomes_project 1 31447436 31673619 - MGP_CASTEiJ_P0018447 Prim2 protein_coding protein_coding MGP_CASTEiJ_T0018448.1 MGP_CASTEiJ_G0015253.1 mouse_genomes_project 1 31475960 31618011 - Prim2 protein_coding retained_intron MGP_CASTEiJ_T0022528.1 MGP_CASTEiJ_G0016047.1 mouse_genomes_project 1 169448728 169487248 + MGP_CASTEiJ_P0022528 Gpa33 protein_coding protein_coding MGP_CASTEiJ_T0022529.1 MGP_CASTEiJ_G0016047.1 mouse_genomes_project 1 169448830 169478246 + MGP_CASTEiJ_P0022529 Gpa33 protein_coding protein_coding MGP_CASTEiJ_T0022530.1 MGP_CASTEiJ_G0016047.1 mouse_genomes_project 1 169448916 169473950 + Gpa33 protein_coding processed_transcript MGP_CASTEiJ_T0022531.1 MGP_CASTEiJ_G0016047.1 mouse_genomes_project 1 169448966 169487247 + MGP_CASTEiJ_P0022531 Gpa33 protein_coding protein_coding MGP_CASTEiJ_T0100335.1 MGP_CASTEiJ_G0037248.1 mouse_genomes_project 1 166375942 166376064 + Gm22434 snoRNA snoRNA MGP_CASTEiJ_T0009321.1 MGP_CASTEiJ_G0007509.1 mouse_genomes_project 1 198517471 198517539 - Mir205 miRNA miRNA MGP_CASTEiJ_T0000464.1 MGP_CASTEiJ_G0000410.1 mouse_genomes_project 1 65912712 65914438 - TEC TEC MGP_CASTEiJ_T0022447.1 MGP_CASTEiJ_G0016034.1 mouse_genomes_project 1 168451735 168476130 - MGP_CASTEiJ_P0022447 Tbx19 protein_coding protein_coding MGP_CASTEiJ_T0022448.1 MGP_CASTEiJ_G0016034.1 mouse_genomes_project 1 168452849 168464663 - Tbx19 protein_coding processed_transcript MGP_CASTEiJ_T0022449.1 MGP_CASTEiJ_G0016034.1 mouse_genomes_project 1 168452907 168469211 - MGP_CASTEiJ_P0022449 Tbx19 protein_coding protein_coding MGP_CASTEiJ_T0022450.1 MGP_CASTEiJ_G0016034.1 mouse_genomes_project 1 168456424 168464352 - Tbx19 protein_coding processed_transcript MGP_CASTEiJ_T0019366.1 MGP_CASTEiJ_G0015422.1 mouse_genomes_project 1 58716915 58840826 + MGP_CASTEiJ_P0019366 Bmpr2 protein_coding protein_coding MGP_CASTEiJ_T0019367.1 MGP_CASTEiJ_G0015422.1 mouse_genomes_project 1 58809862 58813009 + Bmpr2 protein_coding retained_intron MGP_CASTEiJ_T0019368.1 MGP_CASTEiJ_G0015422.1 mouse_genomes_project 1 58812135 58816762 + Bmpr2 protein_coding retained_intron MGP_CASTEiJ_T0000563.1 MGP_CASTEiJ_G0000509.1 mouse_genomes_project 1 124358464 124361476 - TEC TEC MGP_CASTEiJ_T0012007.1 MGP_CASTEiJ_G0010170.1 mouse_genomes_project 1 185227477 185227926 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021732.1 MGP_CASTEiJ_G0015900.1 mouse_genomes_project 1 141092104 141285317 - MGP_CASTEiJ_P0021732 Crb1 protein_coding protein_coding MGP_CASTEiJ_T0021733.1 MGP_CASTEiJ_G0015900.1 mouse_genomes_project 1 141093298 141097332 - Crb1 protein_coding retained_intron MGP_CASTEiJ_T0021734.1 MGP_CASTEiJ_G0015900.1 mouse_genomes_project 1 141125463 141285340 - MGP_CASTEiJ_P0021734 Crb1 protein_coding protein_coding MGP_CASTEiJ_T0021735.1 MGP_CASTEiJ_G0015900.1 mouse_genomes_project 1 141141523 141150517 - Crb1 protein_coding retained_intron MGP_CASTEiJ_T0021736.1 MGP_CASTEiJ_G0015900.1 mouse_genomes_project 1 141143537 141285281 - MGP_CASTEiJ_P0021736 Crb1 protein_coding protein_coding MGP_CASTEiJ_T0021737.1 MGP_CASTEiJ_G0015900.1 mouse_genomes_project 1 141144599 141231923 - MGP_CASTEiJ_P0021737 Crb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021738.1 MGP_CASTEiJ_G0015900.1 mouse_genomes_project 1 141144614 141231943 - MGP_CASTEiJ_P0021738 Crb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020850.1 MGP_CASTEiJ_G0015715.1 mouse_genomes_project 1 106074727 106212693 - MGP_CASTEiJ_P0020850 Pign protein_coding protein_coding MGP_CASTEiJ_T0020851.1 MGP_CASTEiJ_G0015715.1 mouse_genomes_project 1 106074731 106217413 - MGP_CASTEiJ_P0020851 Pign protein_coding protein_coding MGP_CASTEiJ_T0020852.1 MGP_CASTEiJ_G0015715.1 mouse_genomes_project 1 106077482 106125910 - Pign protein_coding processed_transcript MGP_CASTEiJ_T0020853.1 MGP_CASTEiJ_G0015715.1 mouse_genomes_project 1 106109076 106217394 - MGP_CASTEiJ_P0020853 Pign protein_coding protein_coding MGP_CASTEiJ_T0020854.1 MGP_CASTEiJ_G0015715.1 mouse_genomes_project 1 106115189 106217413 - MGP_CASTEiJ_P0020854 Pign protein_coding protein_coding MGP_CASTEiJ_T0020855.1 MGP_CASTEiJ_G0015715.1 mouse_genomes_project 1 106199124 106217428 - Pign protein_coding retained_intron MGP_CASTEiJ_T0020856.1 MGP_CASTEiJ_G0015715.1 mouse_genomes_project 1 106199124 106217427 - Pign protein_coding retained_intron MGP_CASTEiJ_T0020857.1 MGP_CASTEiJ_G0015715.1 mouse_genomes_project 1 106199278 106203350 - Pign protein_coding retained_intron MGP_CASTEiJ_T0020858.1 MGP_CASTEiJ_G0015715.1 mouse_genomes_project 1 106211943 106217424 - Pign protein_coding retained_intron MGP_CASTEiJ_T0020859.1 MGP_CASTEiJ_G0015715.1 mouse_genomes_project 1 106212862 106217423 - Pign protein_coding retained_intron MGP_CASTEiJ_T0002834.1 MGP_CASTEiJ_G0002675.1 mouse_genomes_project 1 167413936 167416807 - Gm16587 antisense antisense MGP_CASTEiJ_T0005671.1 MGP_CASTEiJ_G0004768.1 mouse_genomes_project 1 90500630 90508754 + 4930434B07Rik lincRNA lincRNA MGP_CASTEiJ_T0018300.1 MGP_CASTEiJ_G0015213.1 mouse_genomes_project 1 14587650 14612541 + MGP_CASTEiJ_P0018300 Gdap1 protein_coding protein_coding MGP_CASTEiJ_T0018301.1 MGP_CASTEiJ_G0015213.1 mouse_genomes_project 1 14587692 14607057 + Gdap1 protein_coding retained_intron MGP_CASTEiJ_T0018302.1 MGP_CASTEiJ_G0015213.1 mouse_genomes_project 1 14587756 14609918 + MGP_CASTEiJ_P0018302 Gdap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018303.1 MGP_CASTEiJ_G0015213.1 mouse_genomes_project 1 14606682 14610326 + Gdap1 protein_coding retained_intron MGP_CASTEiJ_T0011568.1 MGP_CASTEiJ_G0009731.1 mouse_genomes_project 1 4523047 4523225 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020608.1 MGP_CASTEiJ_G0015663.1 mouse_genomes_project 1 91966152 91981748 + MGP_CASTEiJ_P0020608 Asb1 protein_coding protein_coding MGP_CASTEiJ_T0020609.1 MGP_CASTEiJ_G0015663.1 mouse_genomes_project 1 91966175 91972634 + Asb1 protein_coding processed_transcript MGP_CASTEiJ_T0020610.1 MGP_CASTEiJ_G0015663.1 mouse_genomes_project 1 91966322 91985304 + MGP_CASTEiJ_P0020610 Asb1 protein_coding protein_coding MGP_CASTEiJ_T0020611.1 MGP_CASTEiJ_G0015663.1 mouse_genomes_project 1 91966340 91980481 + MGP_CASTEiJ_P0020611 Asb1 protein_coding protein_coding MGP_CASTEiJ_T0020612.1 MGP_CASTEiJ_G0015663.1 mouse_genomes_project 1 91966340 91980481 + MGP_CASTEiJ_P0020612 Asb1 protein_coding protein_coding MGP_CASTEiJ_T0020613.1 MGP_CASTEiJ_G0015663.1 mouse_genomes_project 1 91966688 91980774 + MGP_CASTEiJ_P0020613 Asb1 protein_coding protein_coding MGP_CASTEiJ_T0020614.1 MGP_CASTEiJ_G0015663.1 mouse_genomes_project 1 91966688 91978450 + MGP_CASTEiJ_P0020614 Asb1 protein_coding protein_coding MGP_CASTEiJ_T0005645.1 MGP_CASTEiJ_G0004746.1 mouse_genomes_project 1 77698128 77726417 - Gm28387 lincRNA lincRNA MGP_CASTEiJ_T0010908.1 MGP_CASTEiJ_G0009096.1 mouse_genomes_project 1 7496329 7496569 + Gm26348 misc_RNA misc_RNA MGP_CASTEiJ_T0100246.1 MGP_CASTEiJ_G0037159.1 mouse_genomes_project 1 4602185 4602315 + Gm23274 snoRNA snoRNA MGP_CASTEiJ_T0019233.1 MGP_CASTEiJ_G0015400.1 mouse_genomes_project 1 57138700 57236463 + MGP_CASTEiJ_P0019233 Aox2 protein_coding protein_coding MGP_CASTEiJ_T0011913.1 MGP_CASTEiJ_G0010076.1 mouse_genomes_project 1 140740535 140740758 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098804.1 MGP_CASTEiJ_G0035734.1 mouse_genomes_project 1 168550800 168559252 - sense_intronic sense_intronic MGP_CASTEiJ_T0009280.1 MGP_CASTEiJ_G0007468.1 mouse_genomes_project 1 106127937 106128033 + Gm22426 miRNA miRNA MGP_CASTEiJ_T0011549.1 MGP_CASTEiJ_G0009712.1 mouse_genomes_project 1 1773358 1773807 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019892.1 MGP_CASTEiJ_G0015526.1 mouse_genomes_project 1 74786674 74789647 + Zfand2b protein_coding retained_intron MGP_CASTEiJ_T0019893.1 MGP_CASTEiJ_G0015526.1 mouse_genomes_project 1 74786674 74789651 + MGP_CASTEiJ_P0019893 Zfand2b protein_coding protein_coding MGP_CASTEiJ_T0019894.1 MGP_CASTEiJ_G0015526.1 mouse_genomes_project 1 74786674 74788774 + MGP_CASTEiJ_P0019894 Zfand2b protein_coding protein_coding MGP_CASTEiJ_T0019895.1 MGP_CASTEiJ_G0015526.1 mouse_genomes_project 1 74786683 74789647 + MGP_CASTEiJ_P0019895 Zfand2b protein_coding protein_coding MGP_CASTEiJ_T0019896.1 MGP_CASTEiJ_G0015526.1 mouse_genomes_project 1 74786686 74787925 + Zfand2b protein_coding retained_intron MGP_CASTEiJ_T0019897.1 MGP_CASTEiJ_G0015526.1 mouse_genomes_project 1 74786694 74787664 + Zfand2b protein_coding retained_intron MGP_CASTEiJ_T0019898.1 MGP_CASTEiJ_G0015526.1 mouse_genomes_project 1 74786729 74788591 + Zfand2b protein_coding retained_intron MGP_CASTEiJ_T0019899.1 MGP_CASTEiJ_G0015526.1 mouse_genomes_project 1 74786806 74788709 + Zfand2b protein_coding retained_intron MGP_CASTEiJ_T0019900.1 MGP_CASTEiJ_G0015526.1 mouse_genomes_project 1 74786956 74789424 + MGP_CASTEiJ_P0019900 Zfand2b protein_coding protein_coding MGP_CASTEiJ_T0000614.1 MGP_CASTEiJ_G0000559.1 mouse_genomes_project 1 139784526 139786518 + TEC TEC MGP_CASTEiJ_T0000456.1 MGP_CASTEiJ_G0000402.1 mouse_genomes_project 1 60705805 60708544 + TEC TEC MGP_CASTEiJ_T0019057.1 MGP_CASTEiJ_G0015364.1 mouse_genomes_project 1 51582892 51586680 + Hibch protein_coding retained_intron MGP_CASTEiJ_T0019058.1 MGP_CASTEiJ_G0015364.1 mouse_genomes_project 1 51583007 51626637 + Hibch protein_coding retained_intron MGP_CASTEiJ_T0019059.1 MGP_CASTEiJ_G0015364.1 mouse_genomes_project 1 51583009 51659986 + MGP_CASTEiJ_P0019059 Hibch protein_coding protein_coding MGP_CASTEiJ_T0019060.1 MGP_CASTEiJ_G0015364.1 mouse_genomes_project 1 51589795 51599599 + Hibch protein_coding processed_transcript MGP_CASTEiJ_T0019061.1 MGP_CASTEiJ_G0015364.1 mouse_genomes_project 1 51603969 51637984 + Hibch protein_coding processed_transcript MGP_CASTEiJ_T0019062.1 MGP_CASTEiJ_G0015364.1 mouse_genomes_project 1 51639294 51651429 + Hibch protein_coding retained_intron MGP_CASTEiJ_T0000402.1 MGP_CASTEiJ_G0000348.1 mouse_genomes_project 1 31675750 31678054 - TEC TEC MGP_CASTEiJ_T0000595.1 MGP_CASTEiJ_G0000541.1 mouse_genomes_project 1 133528719 133534764 + TEC TEC MGP_CASTEiJ_T0011589.1 MGP_CASTEiJ_G0009752.1 mouse_genomes_project 1 9912392 9917167 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005604.1 MGP_CASTEiJ_G0004716.1 mouse_genomes_project 1 62234806 62247279 + Gm20342 lincRNA lincRNA MGP_CASTEiJ_T0011768.1 MGP_CASTEiJ_G0009931.1 mouse_genomes_project 1 66882841 66884817 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000517.1 MGP_CASTEiJ_G0000463.1 mouse_genomes_project 1 86866288 86868600 + TEC TEC MGP_CASTEiJ_T0009249.1 MGP_CASTEiJ_G0007437.1 mouse_genomes_project 1 62132028 62132133 + Gm44468 miRNA miRNA MGP_CASTEiJ_T0005691.1 MGP_CASTEiJ_G0004787.1 mouse_genomes_project 1 97150698 97174599 - lincRNA lincRNA MGP_CASTEiJ_T0022526.1 MGP_CASTEiJ_G0016046.1 mouse_genomes_project 1 169411341 169446413 - MGP_CASTEiJ_P0022526 Dusp27 protein_coding protein_coding MGP_CASTEiJ_T0022527.1 MGP_CASTEiJ_G0016046.1 mouse_genomes_project 1 169411346 169446387 - MGP_CASTEiJ_P0022527 Dusp27 protein_coding protein_coding MGP_CASTEiJ_T0011965.1 MGP_CASTEiJ_G0010128.1 mouse_genomes_project 1 162448567 162449064 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010920.1 MGP_CASTEiJ_G0009108.1 mouse_genomes_project 1 72987374 72987528 + Gm27315 misc_RNA misc_RNA MGP_CASTEiJ_T0021107.1 MGP_CASTEiJ_G0015769.1 mouse_genomes_project 1 128388194 128583631 + Mgat5 protein_coding retained_intron MGP_CASTEiJ_T0021108.1 MGP_CASTEiJ_G0015769.1 mouse_genomes_project 1 128388197 128690965 + MGP_CASTEiJ_P0021108 Mgat5 protein_coding protein_coding MGP_CASTEiJ_T0021109.1 MGP_CASTEiJ_G0015769.1 mouse_genomes_project 1 128388207 128594157 + Mgat5 protein_coding retained_intron MGP_CASTEiJ_T0021110.1 MGP_CASTEiJ_G0015769.1 mouse_genomes_project 1 128499030 128686453 + MGP_CASTEiJ_P0021110 Mgat5 protein_coding protein_coding MGP_CASTEiJ_T0021210.1 MGP_CASTEiJ_G0015790.1 mouse_genomes_project 1 132171936 132190699 + MGP_CASTEiJ_P0021210 Fcamr protein_coding unknown_likely_coding MGP_CASTEiJ_T0021211.1 MGP_CASTEiJ_G0015790.1 mouse_genomes_project 1 132172347 132186091 + MGP_CASTEiJ_P0021211 Fcamr protein_coding protein_coding MGP_CASTEiJ_T0020102.1 MGP_CASTEiJ_G0015554.1 mouse_genomes_project 1 78453900 78510902 + MGP_CASTEiJ_P0020102 Acsl3 protein_coding protein_coding MGP_CASTEiJ_T0020103.1 MGP_CASTEiJ_G0015554.1 mouse_genomes_project 1 78453958 78510100 + MGP_CASTEiJ_P0020103 Acsl3 protein_coding protein_coding MGP_CASTEiJ_T0020106.1 MGP_CASTEiJ_G0015554.1 mouse_genomes_project 1 78482931 78513418 + MGP_CASTEiJ_P0020106 Acsl3 protein_coding protein_coding MGP_CASTEiJ_T0020107.1 MGP_CASTEiJ_G0015554.1 mouse_genomes_project 1 78483205 78493499 + Acsl3 protein_coding retained_intron MGP_CASTEiJ_T0020108.1 MGP_CASTEiJ_G0015554.1 mouse_genomes_project 1 78491525 78497825 + Acsl3 protein_coding retained_intron MGP_CASTEiJ_T0020109.1 MGP_CASTEiJ_G0015554.1 mouse_genomes_project 1 78497452 78504423 + Acsl3 protein_coding retained_intron MGP_CASTEiJ_T0002774.1 MGP_CASTEiJ_G0002628.1 mouse_genomes_project 1 129157886 129169057 + Gm28800 antisense antisense MGP_CASTEiJ_T0011716.1 MGP_CASTEiJ_G0009879.1 mouse_genomes_project 1 53826914 53827722 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022850.1 MGP_CASTEiJ_G0016123.1 mouse_genomes_project 1 175809681 175858129 + MGP_CASTEiJ_P0022850 Dcaf8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022851.1 MGP_CASTEiJ_G0016123.1 mouse_genomes_project 1 175809686 175852442 + Dcaf8 protein_coding retained_intron MGP_CASTEiJ_T0022852.1 MGP_CASTEiJ_G0016123.1 mouse_genomes_project 1 175809715 175858846 + MGP_CASTEiJ_P0022852 Dcaf8 protein_coding protein_coding MGP_CASTEiJ_T0022853.1 MGP_CASTEiJ_G0016123.1 mouse_genomes_project 1 175809737 175853669 + Dcaf8 protein_coding retained_intron MGP_CASTEiJ_T0022854.1 MGP_CASTEiJ_G0016123.1 mouse_genomes_project 1 175809739 175858805 + MGP_CASTEiJ_P0022854 Dcaf8 protein_coding protein_coding MGP_CASTEiJ_T0022855.1 MGP_CASTEiJ_G0016123.1 mouse_genomes_project 1 175809775 175859729 + MGP_CASTEiJ_P0022855 Dcaf8 protein_coding protein_coding MGP_CASTEiJ_T0022856.1 MGP_CASTEiJ_G0016123.1 mouse_genomes_project 1 175810543 175853669 + Dcaf8 protein_coding retained_intron MGP_CASTEiJ_T0022857.1 MGP_CASTEiJ_G0016123.1 mouse_genomes_project 1 175834717 175836989 + Dcaf8 protein_coding retained_intron MGP_CASTEiJ_T0022858.1 MGP_CASTEiJ_G0016123.1 mouse_genomes_project 1 175834821 175856453 + MGP_CASTEiJ_P0022858 Dcaf8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022859.1 MGP_CASTEiJ_G0016123.1 mouse_genomes_project 1 175839242 175843803 + Dcaf8 protein_coding retained_intron MGP_CASTEiJ_T0022860.1 MGP_CASTEiJ_G0016123.1 mouse_genomes_project 1 175851241 175860345 + MGP_CASTEiJ_P0022860 Dcaf8 protein_coding protein_coding MGP_CASTEiJ_T0101487.1 MGP_CASTEiJ_G0038397.1 mouse_genomes_project 1 116599537 116618282 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101488.1 MGP_CASTEiJ_G0038397.1 mouse_genomes_project 1 116599950 116601137 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101489.1 MGP_CASTEiJ_G0038397.1 mouse_genomes_project 1 116600378 116618287 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0100321.1 MGP_CASTEiJ_G0037234.1 mouse_genomes_project 1 163092291 163092401 - Gm24719 snoRNA snoRNA MGP_CASTEiJ_T0011877.1 MGP_CASTEiJ_G0010040.1 mouse_genomes_project 1 120600410 120601120 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011795.1 MGP_CASTEiJ_G0009958.1 mouse_genomes_project 1 82998842 82999968 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020216.1 MGP_CASTEiJ_G0015579.1 mouse_genomes_project 1 84048261 84298863 - MGP_CASTEiJ_P0020216 Pid1 protein_coding protein_coding MGP_CASTEiJ_T0020217.1 MGP_CASTEiJ_G0015579.1 mouse_genomes_project 1 84049196 84353111 - MGP_CASTEiJ_P0020217 Pid1 protein_coding protein_coding MGP_CASTEiJ_T0020218.1 MGP_CASTEiJ_G0015579.1 mouse_genomes_project 1 84049892 84066147 - Pid1 protein_coding processed_transcript MGP_CASTEiJ_T0020219.1 MGP_CASTEiJ_G0015579.1 mouse_genomes_project 1 84095131 84298641 - MGP_CASTEiJ_P0020219 Pid1 protein_coding protein_coding MGP_CASTEiJ_T0020220.1 MGP_CASTEiJ_G0015579.1 mouse_genomes_project 1 84129394 84377246 - MGP_CASTEiJ_P0020220 Pid1 protein_coding protein_coding MGP_CASTEiJ_T0020221.1 MGP_CASTEiJ_G0015579.1 mouse_genomes_project 1 84137810 84355874 - MGP_CASTEiJ_P0020221 Pid1 protein_coding protein_coding MGP_CASTEiJ_T0020222.1 MGP_CASTEiJ_G0015579.1 mouse_genomes_project 1 84178932 84298829 - MGP_CASTEiJ_P0020222 Pid1 protein_coding protein_coding MGP_CASTEiJ_T0020223.1 MGP_CASTEiJ_G0015579.1 mouse_genomes_project 1 84297410 84298841 - Pid1 protein_coding retained_intron MGP_CASTEiJ_T0023434.1 MGP_CASTEiJ_G0016270.1 mouse_genomes_project 1 193801450 193841030 - MGP_CASTEiJ_P0023434 Kctd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023435.1 MGP_CASTEiJ_G0016270.1 mouse_genomes_project 1 193801450 193841042 - MGP_CASTEiJ_P0023435 Kctd3 protein_coding protein_coding MGP_CASTEiJ_T0023436.1 MGP_CASTEiJ_G0016270.1 mouse_genomes_project 1 193803345 193805636 - Kctd3 protein_coding retained_intron MGP_CASTEiJ_T0023437.1 MGP_CASTEiJ_G0016270.1 mouse_genomes_project 1 193803458 193805254 - Kctd3 protein_coding retained_intron MGP_CASTEiJ_T0023438.1 MGP_CASTEiJ_G0016270.1 mouse_genomes_project 1 193803570 193811727 - MGP_CASTEiJ_P0023438 Kctd3 protein_coding protein_coding MGP_CASTEiJ_T0023439.1 MGP_CASTEiJ_G0016270.1 mouse_genomes_project 1 193803613 193804725 - Kctd3 protein_coding retained_intron MGP_CASTEiJ_T0023440.1 MGP_CASTEiJ_G0016270.1 mouse_genomes_project 1 193804786 193809776 - Kctd3 protein_coding processed_transcript MGP_CASTEiJ_T0023441.1 MGP_CASTEiJ_G0016270.1 mouse_genomes_project 1 193811677 193814931 - Kctd3 protein_coding retained_intron MGP_CASTEiJ_T0023442.1 MGP_CASTEiJ_G0016270.1 mouse_genomes_project 1 193813921 193841043 - Kctd3 protein_coding retained_intron MGP_CASTEiJ_T0023443.1 MGP_CASTEiJ_G0016270.1 mouse_genomes_project 1 193827627 193830050 - Kctd3 protein_coding retained_intron MGP_CASTEiJ_T0011954.1 MGP_CASTEiJ_G0010117.1 mouse_genomes_project 1 158034535 158035117 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023588.1 MGP_CASTEiJ_G0016299.1 mouse_genomes_project 1 197837246 197848763 - MGP_CASTEiJ_P0023588 Sertad4 protein_coding protein_coding MGP_CASTEiJ_T0023589.1 MGP_CASTEiJ_G0016299.1 mouse_genomes_project 1 197837247 197844772 - MGP_CASTEiJ_P0023589 Sertad4 protein_coding protein_coding MGP_CASTEiJ_T0023590.1 MGP_CASTEiJ_G0016299.1 mouse_genomes_project 1 197839833 197844772 - MGP_CASTEiJ_P0023590 Sertad4 protein_coding protein_coding MGP_CASTEiJ_T0023591.1 MGP_CASTEiJ_G0016299.1 mouse_genomes_project 1 197847224 197848499 - Sertad4 protein_coding processed_transcript MGP_CASTEiJ_T0021298.1 MGP_CASTEiJ_G0015813.1 mouse_genomes_project 1 133429011 133447410 + MGP_CASTEiJ_P0021298 Elk4 protein_coding protein_coding MGP_CASTEiJ_T0021299.1 MGP_CASTEiJ_G0015813.1 mouse_genomes_project 1 133429281 133444627 + MGP_CASTEiJ_P0021299 Elk4 protein_coding protein_coding MGP_CASTEiJ_T0021300.1 MGP_CASTEiJ_G0015813.1 mouse_genomes_project 1 133429504 133435617 + Elk4 protein_coding processed_transcript MGP_CASTEiJ_T0021301.1 MGP_CASTEiJ_G0015813.1 mouse_genomes_project 1 133429514 133435475 + Elk4 protein_coding processed_transcript MGP_CASTEiJ_T0021302.1 MGP_CASTEiJ_G0015813.1 mouse_genomes_project 1 133429702 133439267 + MGP_CASTEiJ_P0021302 Elk4 protein_coding protein_coding MGP_CASTEiJ_T0021303.1 MGP_CASTEiJ_G0015813.1 mouse_genomes_project 1 133438769 133454883 + MGP_CASTEiJ_P0021303 Elk4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021304.1 MGP_CASTEiJ_G0015813.1 mouse_genomes_project 1 133439404 133453965 + Elk4 protein_coding processed_transcript MGP_CASTEiJ_T0019302.1 MGP_CASTEiJ_G0015412.1 mouse_genomes_project 1 57844565 57854061 + Stradb protein_coding retained_intron MGP_CASTEiJ_T0019303.1 MGP_CASTEiJ_G0015412.1 mouse_genomes_project 1 57844565 57860403 + Stradb protein_coding retained_intron MGP_CASTEiJ_T0019304.1 MGP_CASTEiJ_G0015412.1 mouse_genomes_project 1 57844565 57867633 + MGP_CASTEiJ_P0019304 Stradb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019305.1 MGP_CASTEiJ_G0015412.1 mouse_genomes_project 1 57844565 57864049 + MGP_CASTEiJ_P0019305 Stradb protein_coding protein_coding MGP_CASTEiJ_T0019306.1 MGP_CASTEiJ_G0015412.1 mouse_genomes_project 1 57844565 57868226 + MGP_CASTEiJ_P0019306 Stradb protein_coding protein_coding MGP_CASTEiJ_T0019307.1 MGP_CASTEiJ_G0015412.1 mouse_genomes_project 1 57844565 57867508 + MGP_CASTEiJ_P0019307 Stradb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019308.1 MGP_CASTEiJ_G0015412.1 mouse_genomes_project 1 57863598 57866875 + MGP_CASTEiJ_P0019308 Stradb protein_coding protein_coding MGP_CASTEiJ_T0019569.1 MGP_CASTEiJ_G0015464.1 mouse_genomes_project 1 65169126 65173604 + MGP_CASTEiJ_P0019569 Crygf protein_coding protein_coding MGP_CASTEiJ_T0019570.1 MGP_CASTEiJ_G0015464.1 mouse_genomes_project 1 65169144 65173603 + MGP_CASTEiJ_P0019570 Crygf protein_coding protein_coding MGP_CASTEiJ_T0099119.1 MGP_CASTEiJ_G0036032.1 mouse_genomes_project 1 137012866 137012972 - Gm22796 snRNA snRNA MGP_CASTEiJ_T0011918.1 MGP_CASTEiJ_G0010081.1 mouse_genomes_project 1 141646484 141646907 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021749.1 MGP_CASTEiJ_G0015903.1 mouse_genomes_project 1 141423166 141446852 + MGP_CASTEiJ_P0021749 F13b protein_coding protein_coding MGP_CASTEiJ_T0021750.1 MGP_CASTEiJ_G0015903.1 mouse_genomes_project 1 141439473 141440983 + F13b protein_coding processed_transcript MGP_CASTEiJ_T0021066.1 MGP_CASTEiJ_G0015761.1 mouse_genomes_project 1 122392786 122411161 - MGP_CASTEiJ_P0021066 Htr5b protein_coding protein_coding MGP_CASTEiJ_T0021981.1 MGP_CASTEiJ_G0015947.1 mouse_genomes_project 1 156536008 156547772 + MGP_CASTEiJ_P0021981 Rnasel protein_coding protein_coding MGP_CASTEiJ_T0021982.1 MGP_CASTEiJ_G0015947.1 mouse_genomes_project 1 156536352 156546328 + Rnasel protein_coding retained_intron MGP_CASTEiJ_T0021983.1 MGP_CASTEiJ_G0015947.1 mouse_genomes_project 1 156537235 156549709 + MGP_CASTEiJ_P0021983 Rnasel protein_coding protein_coding MGP_CASTEiJ_T0021984.1 MGP_CASTEiJ_G0015947.1 mouse_genomes_project 1 156540371 156546328 + Rnasel protein_coding processed_transcript MGP_CASTEiJ_T0019784.1 MGP_CASTEiJ_G0015505.1 mouse_genomes_project 1 74084063 74156862 - MGP_CASTEiJ_P0019784 Usp37 protein_coding protein_coding MGP_CASTEiJ_T0019785.1 MGP_CASTEiJ_G0015505.1 mouse_genomes_project 1 74086285 74156900 - MGP_CASTEiJ_P0019785 Usp37 protein_coding protein_coding MGP_CASTEiJ_T0019786.1 MGP_CASTEiJ_G0015505.1 mouse_genomes_project 1 74087723 74117511 - Usp37 protein_coding processed_transcript MGP_CASTEiJ_T0019787.1 MGP_CASTEiJ_G0015505.1 mouse_genomes_project 1 74099411 74156844 - Usp37 protein_coding retained_intron MGP_CASTEiJ_T0019788.1 MGP_CASTEiJ_G0015505.1 mouse_genomes_project 1 74145961 74156865 - MGP_CASTEiJ_P0019788 Usp37 protein_coding protein_coding MGP_CASTEiJ_T0019789.1 MGP_CASTEiJ_G0015505.1 mouse_genomes_project 1 74150169 74156850 - Usp37 protein_coding retained_intron MGP_CASTEiJ_T0019790.1 MGP_CASTEiJ_G0015505.1 mouse_genomes_project 1 74150253 74157342 - Usp37 protein_coding processed_transcript MGP_CASTEiJ_T0023112.1 MGP_CASTEiJ_G0016205.1 mouse_genomes_project 1 183936228 183992047 - MGP_CASTEiJ_P0023112 Gm1305 protein_coding protein_coding MGP_CASTEiJ_T0019705.1 MGP_CASTEiJ_G0015489.1 mouse_genomes_project 1 72375671 72470489 + MGP_CASTEiJ_P0019705 Igfbp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0019706.1 MGP_CASTEiJ_G0015489.1 mouse_genomes_project 1 72375699 72405108 + MGP_CASTEiJ_P0019706 Igfbp2 protein_coding protein_coding MGP_CASTEiJ_T0019707.1 MGP_CASTEiJ_G0015489.1 mouse_genomes_project 1 72401721 72404763 + Igfbp2 protein_coding retained_intron MGP_CASTEiJ_T0002846.1 MGP_CASTEiJ_G0002684.1 mouse_genomes_project 1 174477617 174482072 + Gm38204 antisense antisense MGP_CASTEiJ_T0005551.1 MGP_CASTEiJ_G0004681.1 mouse_genomes_project 1 40810779 40811177 + lincRNA lincRNA MGP_CASTEiJ_T0099148.1 MGP_CASTEiJ_G0036061.1 mouse_genomes_project 1 196777507 196777611 - Gm22446 snRNA snRNA MGP_CASTEiJ_T0021599.1 MGP_CASTEiJ_G0015875.1 mouse_genomes_project 1 137399649 137432709 + MGP_CASTEiJ_P0021599 Csrp1 protein_coding protein_coding MGP_CASTEiJ_T0021600.1 MGP_CASTEiJ_G0015875.1 mouse_genomes_project 1 137408874 137432709 + MGP_CASTEiJ_P0021600 Csrp1 protein_coding protein_coding MGP_CASTEiJ_T0022976.1 MGP_CASTEiJ_G0016172.1 mouse_genomes_project 1 178320739 178321669 + MGP_CASTEiJ_P0022976 Olfr417 protein_coding protein_coding MGP_CASTEiJ_T0021950.1 MGP_CASTEiJ_G0015941.1 mouse_genomes_project 1 155952845 156080971 - MGP_CASTEiJ_P0021950 Lamc1 protein_coding protein_coding MGP_CASTEiJ_T0021951.1 MGP_CASTEiJ_G0015941.1 mouse_genomes_project 1 155952845 155963176 - MGP_CASTEiJ_P0021951 Lamc1 protein_coding protein_coding MGP_CASTEiJ_T0021952.1 MGP_CASTEiJ_G0015941.1 mouse_genomes_project 1 155962793 155963451 - Lamc1 protein_coding retained_intron MGP_CASTEiJ_T0021953.1 MGP_CASTEiJ_G0015941.1 mouse_genomes_project 1 155962847 155975680 - MGP_CASTEiJ_P0021953 Lamc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021954.1 MGP_CASTEiJ_G0015941.1 mouse_genomes_project 1 155984996 155986841 - Lamc1 protein_coding retained_intron MGP_CASTEiJ_T0022975.1 MGP_CASTEiJ_G0016171.1 mouse_genomes_project 1 178248108 178251039 + MGP_CASTEiJ_P0022975 Mptx1 protein_coding protein_coding MGP_CASTEiJ_T0005838.1 MGP_CASTEiJ_G0004906.1 mouse_genomes_project 1 181702784 181704178 - 2310043L19Rik lincRNA lincRNA MGP_CASTEiJ_T0099105.1 MGP_CASTEiJ_G0036018.1 mouse_genomes_project 1 99455913 99456013 + Gm23434 snRNA snRNA MGP_CASTEiJ_T0005797.1 MGP_CASTEiJ_G0004872.1 mouse_genomes_project 1 163189122 163192311 - 4930562F07Rik lincRNA lincRNA MGP_CASTEiJ_T0005798.1 MGP_CASTEiJ_G0004872.1 mouse_genomes_project 1 163189122 163192378 - 4930562F07Rik lincRNA lincRNA MGP_CASTEiJ_T0005799.1 MGP_CASTEiJ_G0004872.1 mouse_genomes_project 1 163189357 163192335 - 4930562F07Rik lincRNA lincRNA MGP_CASTEiJ_T0005802.1 MGP_CASTEiJ_G0004875.1 mouse_genomes_project 1 165113169 165124148 + Gm31925 lincRNA lincRNA MGP_CASTEiJ_T0005803.1 MGP_CASTEiJ_G0004875.1 mouse_genomes_project 1 165114816 165126384 + Gm31925 lincRNA lincRNA MGP_CASTEiJ_T0019343.1 MGP_CASTEiJ_G0015420.1 mouse_genomes_project 1 58514267 58610815 - Sumo1 protein_coding processed_transcript MGP_CASTEiJ_T0019348.1 MGP_CASTEiJ_G0015420.1 mouse_genomes_project 1 58574854 58610857 - MGP_CASTEiJ_P0019348 Sumo1 protein_coding protein_coding MGP_CASTEiJ_T0019349.1 MGP_CASTEiJ_G0015420.1 mouse_genomes_project 1 58575364 58610762 - MGP_CASTEiJ_P0019349 Sumo1 protein_coding protein_coding MGP_CASTEiJ_T0019350.1 MGP_CASTEiJ_G0015420.1 mouse_genomes_project 1 58579580 58610857 - Sumo1 protein_coding retained_intron MGP_CASTEiJ_T0018784.1 MGP_CASTEiJ_G0015313.1 mouse_genomes_project 1 38005065 38067263 - MGP_CASTEiJ_P0018784 Rfx8 protein_coding protein_coding MGP_CASTEiJ_T0018785.1 MGP_CASTEiJ_G0015313.1 mouse_genomes_project 1 38024263 38035013 - Rfx8 protein_coding processed_transcript MGP_CASTEiJ_T0019791.1 MGP_CASTEiJ_G0015506.1 mouse_genomes_project 1 74157116 74182776 + MGP_CASTEiJ_P0019791 Cnot9 protein_coding protein_coding MGP_CASTEiJ_T0019792.1 MGP_CASTEiJ_G0015506.1 mouse_genomes_project 1 74157118 74179032 + Cnot9 protein_coding processed_transcript MGP_CASTEiJ_T0019793.1 MGP_CASTEiJ_G0015506.1 mouse_genomes_project 1 74175466 74180123 + Cnot9 protein_coding retained_intron MGP_CASTEiJ_T0021032.1 MGP_CASTEiJ_G0015754.1 mouse_genomes_project 1 120950346 121028139 + MGP_CASTEiJ_P0021032 3110009E18Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0021033.1 MGP_CASTEiJ_G0015754.1 mouse_genomes_project 1 120950358 121024225 + MGP_CASTEiJ_P0021033 3110009E18Rik protein_coding protein_coding MGP_CASTEiJ_T0021034.1 MGP_CASTEiJ_G0015754.1 mouse_genomes_project 1 120950371 121024225 + MGP_CASTEiJ_P0021034 3110009E18Rik protein_coding protein_coding MGP_CASTEiJ_T0021035.1 MGP_CASTEiJ_G0015754.1 mouse_genomes_project 1 120982057 121000338 + 3110009E18Rik protein_coding processed_transcript MGP_CASTEiJ_T0021036.1 MGP_CASTEiJ_G0015754.1 mouse_genomes_project 1 120982129 121004389 + MGP_CASTEiJ_P0021036 3110009E18Rik protein_coding protein_coding MGP_CASTEiJ_T0021037.1 MGP_CASTEiJ_G0015754.1 mouse_genomes_project 1 120993818 121009999 + 3110009E18Rik protein_coding processed_transcript MGP_CASTEiJ_T0023398.1 MGP_CASTEiJ_G0016263.1 mouse_genomes_project 1 191296823 191397548 - MGP_CASTEiJ_P0023398 Tgfb2 protein_coding protein_coding MGP_CASTEiJ_T0023399.1 MGP_CASTEiJ_G0016263.1 mouse_genomes_project 1 191298250 191397254 - MGP_CASTEiJ_P0023399 Tgfb2 protein_coding protein_coding MGP_CASTEiJ_T0023400.1 MGP_CASTEiJ_G0016263.1 mouse_genomes_project 1 191299615 191330091 - Tgfb2 protein_coding retained_intron MGP_CASTEiJ_T0023401.1 MGP_CASTEiJ_G0016263.1 mouse_genomes_project 1 191303869 191330157 - Tgfb2 protein_coding retained_intron MGP_CASTEiJ_T0023402.1 MGP_CASTEiJ_G0016263.1 mouse_genomes_project 1 191307745 191350153 - Tgfb2 protein_coding processed_transcript MGP_CASTEiJ_T0023403.1 MGP_CASTEiJ_G0016263.1 mouse_genomes_project 1 191377643 191395882 - Tgfb2 protein_coding processed_transcript MGP_CASTEiJ_T0011856.1 MGP_CASTEiJ_G0010019.1 mouse_genomes_project 1 112174124 112174905 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016281.1 MGP_CASTEiJ_G0014420.1 mouse_genomes_project 1 88094444 88338759 - processed_transcript processed_transcript MGP_CASTEiJ_T0016282.1 MGP_CASTEiJ_G0014420.1 mouse_genomes_project 1 88330088 88338729 - processed_transcript processed_transcript MGP_CASTEiJ_T0000653.1 MGP_CASTEiJ_G0000597.1 mouse_genomes_project 1 158673190 158673425 + TEC TEC MGP_CASTEiJ_T0022468.1 MGP_CASTEiJ_G0016039.1 mouse_genomes_project 1 168769664 168773850 + Mpc2 protein_coding retained_intron MGP_CASTEiJ_T0022469.1 MGP_CASTEiJ_G0016039.1 mouse_genomes_project 1 168770064 168794120 + MGP_CASTEiJ_P0022469 Mpc2 protein_coding protein_coding MGP_CASTEiJ_T0022470.1 MGP_CASTEiJ_G0016039.1 mouse_genomes_project 1 168770251 168790612 + Mpc2 protein_coding retained_intron MGP_CASTEiJ_T0022471.1 MGP_CASTEiJ_G0016039.1 mouse_genomes_project 1 168770392 168794014 + MGP_CASTEiJ_P0022471 Mpc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022472.1 MGP_CASTEiJ_G0016039.1 mouse_genomes_project 1 168791054 168794025 + Mpc2 protein_coding processed_transcript MGP_CASTEiJ_T0021379.1 MGP_CASTEiJ_G0015827.1 mouse_genomes_project 1 134430844 134503783 - MGP_CASTEiJ_P0021379 Mdm4 protein_coding protein_coding MGP_CASTEiJ_T0021380.1 MGP_CASTEiJ_G0015827.1 mouse_genomes_project 1 134433032 134444873 - Mdm4 protein_coding processed_transcript MGP_CASTEiJ_T0021381.1 MGP_CASTEiJ_G0015827.1 mouse_genomes_project 1 134467253 134503802 - MGP_CASTEiJ_P0021381 Mdm4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021382.1 MGP_CASTEiJ_G0015827.1 mouse_genomes_project 1 134467680 134503799 - MGP_CASTEiJ_P0021382 Mdm4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021383.1 MGP_CASTEiJ_G0015827.1 mouse_genomes_project 1 134467807 134503801 - MGP_CASTEiJ_P0021383 Mdm4 protein_coding protein_coding MGP_CASTEiJ_T0021384.1 MGP_CASTEiJ_G0015827.1 mouse_genomes_project 1 134473094 134496327 - Mdm4 protein_coding processed_transcript MGP_CASTEiJ_T0021385.1 MGP_CASTEiJ_G0015827.1 mouse_genomes_project 1 134473097 134481995 - Mdm4 protein_coding retained_intron MGP_CASTEiJ_T0021386.1 MGP_CASTEiJ_G0015827.1 mouse_genomes_project 1 134475907 134478012 - Mdm4 protein_coding retained_intron MGP_CASTEiJ_T0021387.1 MGP_CASTEiJ_G0015827.1 mouse_genomes_project 1 134477760 134481798 - Mdm4 protein_coding retained_intron MGP_CASTEiJ_T0021388.1 MGP_CASTEiJ_G0015827.1 mouse_genomes_project 1 134486777 134503775 - Mdm4 protein_coding retained_intron MGP_CASTEiJ_T0021389.1 MGP_CASTEiJ_G0015827.1 mouse_genomes_project 1 134486831 134507770 - MGP_CASTEiJ_P0021389 Mdm4 protein_coding protein_coding MGP_CASTEiJ_T0021390.1 MGP_CASTEiJ_G0015827.1 mouse_genomes_project 1 134495164 134503783 - Mdm4 protein_coding retained_intron MGP_CASTEiJ_T0000627.1 MGP_CASTEiJ_G0000571.1 mouse_genomes_project 1 140971201 140975322 - TEC TEC MGP_CASTEiJ_T0005763.1 MGP_CASTEiJ_G0004845.1 mouse_genomes_project 1 139788512 139835512 - Gm26936 lincRNA lincRNA MGP_CASTEiJ_T0005764.1 MGP_CASTEiJ_G0004845.1 mouse_genomes_project 1 139830555 139835487 - Gm26936 lincRNA lincRNA MGP_CASTEiJ_T0022088.1 MGP_CASTEiJ_G0015968.1 mouse_genomes_project 1 159177736 159196062 + MGP_CASTEiJ_P0022088 Nphs2 protein_coding protein_coding MGP_CASTEiJ_T0022089.1 MGP_CASTEiJ_G0015968.1 mouse_genomes_project 1 159178052 159194462 + MGP_CASTEiJ_P0022089 Nphs2 protein_coding protein_coding MGP_CASTEiJ_T0000628.1 MGP_CASTEiJ_G0000572.1 mouse_genomes_project 1 141049450 141052717 + TEC TEC MGP_CASTEiJ_T0022790.1 MGP_CASTEiJ_G0016108.1 mouse_genomes_project 1 174991855 175019921 + MGP_CASTEiJ_P0022790 F11r protein_coding protein_coding MGP_CASTEiJ_T0022791.1 MGP_CASTEiJ_G0016108.1 mouse_genomes_project 1 174991899 175016176 + F11r protein_coding retained_intron MGP_CASTEiJ_T0022792.1 MGP_CASTEiJ_G0016108.1 mouse_genomes_project 1 175018180 175018975 + F11r protein_coding retained_intron MGP_CASTEiJ_T0100250.1 MGP_CASTEiJ_G0037163.1 mouse_genomes_project 1 11190519 11190650 - Gm26273 snoRNA snoRNA MGP_CASTEiJ_T0005844.1 MGP_CASTEiJ_G0004911.1 mouse_genomes_project 1 185608994 185611499 + A430110L20Rik lincRNA lincRNA MGP_CASTEiJ_T0005845.1 MGP_CASTEiJ_G0004911.1 mouse_genomes_project 1 185609084 185611491 + A430110L20Rik lincRNA lincRNA MGP_CASTEiJ_T0099084.1 MGP_CASTEiJ_G0035997.1 mouse_genomes_project 1 51164146 51164255 - Gm23460 snRNA snRNA MGP_CASTEiJ_T0011848.1 MGP_CASTEiJ_G0010011.1 mouse_genomes_project 1 109104870 109106143 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021431.1 MGP_CASTEiJ_G0015838.1 mouse_genomes_project 1 135145427 135181832 - MGP_CASTEiJ_P0021431 Zc3h11a protein_coding protein_coding MGP_CASTEiJ_T0021434.1 MGP_CASTEiJ_G0015838.1 mouse_genomes_project 1 135149834 135152494 - Zc3h11a protein_coding processed_transcript MGP_CASTEiJ_T0021435.1 MGP_CASTEiJ_G0015838.1 mouse_genomes_project 1 135152391 135165311 - MGP_CASTEiJ_P0021435 Zc3h11a protein_coding protein_coding MGP_CASTEiJ_T0021436.1 MGP_CASTEiJ_G0015838.1 mouse_genomes_project 1 135165024 135189985 - MGP_CASTEiJ_P0021436 Zc3h11a protein_coding protein_coding MGP_CASTEiJ_T0021437.1 MGP_CASTEiJ_G0015838.1 mouse_genomes_project 1 135165282 135189965 - MGP_CASTEiJ_P0021437 Zc3h11a protein_coding protein_coding MGP_CASTEiJ_T0021438.1 MGP_CASTEiJ_G0015838.1 mouse_genomes_project 1 135166531 135189967 - Zc3h11a protein_coding retained_intron MGP_CASTEiJ_T0021439.1 MGP_CASTEiJ_G0015838.1 mouse_genomes_project 1 135166821 135189889 - MGP_CASTEiJ_P0021439 Zc3h11a protein_coding protein_coding MGP_CASTEiJ_T0021440.1 MGP_CASTEiJ_G0015838.1 mouse_genomes_project 1 135171949 135189903 - MGP_CASTEiJ_P0021440 Zc3h11a protein_coding protein_coding MGP_CASTEiJ_T0021441.1 MGP_CASTEiJ_G0015838.1 mouse_genomes_project 1 135173817 135189888 - Zc3h11a protein_coding retained_intron MGP_CASTEiJ_T0021442.1 MGP_CASTEiJ_G0015838.1 mouse_genomes_project 1 135174070 135189975 - Zc3h11a protein_coding processed_transcript MGP_CASTEiJ_T0021443.1 MGP_CASTEiJ_G0015838.1 mouse_genomes_project 1 135181661 135189966 - Zc3h11a protein_coding processed_transcript MGP_CASTEiJ_T0021444.1 MGP_CASTEiJ_G0015838.1 mouse_genomes_project 1 135183375 135189987 - Zc3h11a protein_coding retained_intron MGP_CASTEiJ_T0011715.1 MGP_CASTEiJ_G0009878.1 mouse_genomes_project 1 53294323 53294902 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000489.1 MGP_CASTEiJ_G0000435.1 mouse_genomes_project 1 78236669 78238148 - TEC TEC MGP_CASTEiJ_T0021366.1 MGP_CASTEiJ_G0015825.1 mouse_genomes_project 1 134013848 134198808 - MGP_CASTEiJ_P0021366 Nfasc protein_coding protein_coding MGP_CASTEiJ_T0021367.1 MGP_CASTEiJ_G0015825.1 mouse_genomes_project 1 134014492 134118255 - MGP_CASTEiJ_P0021367 Nfasc protein_coding unknown_likely_coding MGP_CASTEiJ_T0021368.1 MGP_CASTEiJ_G0015825.1 mouse_genomes_project 1 134018428 134157530 - MGP_CASTEiJ_P0021368 Nfasc protein_coding protein_coding MGP_CASTEiJ_T0021369.1 MGP_CASTEiJ_G0015825.1 mouse_genomes_project 1 134019223 134157610 - MGP_CASTEiJ_P0021369 Nfasc protein_coding protein_coding MGP_CASTEiJ_T0021370.1 MGP_CASTEiJ_G0015825.1 mouse_genomes_project 1 134019527 134198814 - MGP_CASTEiJ_P0021370 Nfasc protein_coding protein_coding MGP_CASTEiJ_T0021371.1 MGP_CASTEiJ_G0015825.1 mouse_genomes_project 1 134019616 134087634 - MGP_CASTEiJ_P0021371 Nfasc protein_coding protein_coding MGP_CASTEiJ_T0021372.1 MGP_CASTEiJ_G0015825.1 mouse_genomes_project 1 134027146 134037890 - Nfasc protein_coding processed_transcript MGP_CASTEiJ_T0021373.1 MGP_CASTEiJ_G0015825.1 mouse_genomes_project 1 134050600 134198848 - MGP_CASTEiJ_P0021373 Nfasc protein_coding protein_coding MGP_CASTEiJ_T0021374.1 MGP_CASTEiJ_G0015825.1 mouse_genomes_project 1 134052395 134056047 - Nfasc protein_coding retained_intron MGP_CASTEiJ_T0021375.1 MGP_CASTEiJ_G0015825.1 mouse_genomes_project 1 134070210 134075343 - Nfasc protein_coding retained_intron MGP_CASTEiJ_T0021376.1 MGP_CASTEiJ_G0015825.1 mouse_genomes_project 1 134114037 134198829 - Nfasc protein_coding processed_transcript MGP_CASTEiJ_T0000451.1 MGP_CASTEiJ_G0000397.1 mouse_genomes_project 1 59624287 59625757 - TEC TEC MGP_CASTEiJ_T0000741.1 MGP_CASTEiJ_G0000683.1 mouse_genomes_project 1 188968279 188969033 + TEC TEC MGP_CASTEiJ_T0099122.1 MGP_CASTEiJ_G0036035.1 mouse_genomes_project 1 139048624 139048728 - Gm25609 snRNA snRNA MGP_CASTEiJ_T0011925.1 MGP_CASTEiJ_G0010088.1 mouse_genomes_project 1 147311474 147312618 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022212.1 MGP_CASTEiJ_G0015986.1 mouse_genomes_project 1 163199429 163272466 - MGP_CASTEiJ_P0022212 Tnn protein_coding protein_coding MGP_CASTEiJ_T0022213.1 MGP_CASTEiJ_G0015986.1 mouse_genomes_project 1 163199690 163266916 - MGP_CASTEiJ_P0022213 Tnn protein_coding unknown_likely_coding MGP_CASTEiJ_T0022214.1 MGP_CASTEiJ_G0015986.1 mouse_genomes_project 1 163200371 163266775 - MGP_CASTEiJ_P0022214 Tnn protein_coding protein_coding MGP_CASTEiJ_T0011670.1 MGP_CASTEiJ_G0009833.1 mouse_genomes_project 1 43137713 43138022 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023356.1 MGP_CASTEiJ_G0016254.1 mouse_genomes_project 1 189369820 189402621 - MGP_CASTEiJ_P0023356 Marc2 protein_coding protein_coding MGP_CASTEiJ_T0023357.1 MGP_CASTEiJ_G0016254.1 mouse_genomes_project 1 189370430 189384488 - Marc2 protein_coding processed_transcript MGP_CASTEiJ_T0023358.1 MGP_CASTEiJ_G0016254.1 mouse_genomes_project 1 189370434 189380070 - Marc2 protein_coding retained_intron MGP_CASTEiJ_T0023359.1 MGP_CASTEiJ_G0016254.1 mouse_genomes_project 1 189370444 189384273 - Marc2 protein_coding processed_transcript MGP_CASTEiJ_T0023360.1 MGP_CASTEiJ_G0016254.1 mouse_genomes_project 1 189370446 189376645 - Marc2 protein_coding retained_intron MGP_CASTEiJ_T0023361.1 MGP_CASTEiJ_G0016254.1 mouse_genomes_project 1 189370512 189384263 - Marc2 protein_coding processed_transcript MGP_CASTEiJ_T0023362.1 MGP_CASTEiJ_G0016254.1 mouse_genomes_project 1 189376438 189402548 - Marc2 protein_coding processed_transcript MGP_CASTEiJ_T0023363.1 MGP_CASTEiJ_G0016254.1 mouse_genomes_project 1 189379413 189403189 - MGP_CASTEiJ_P0023363 Marc2 protein_coding protein_coding MGP_CASTEiJ_T0023364.1 MGP_CASTEiJ_G0016254.1 mouse_genomes_project 1 189384795 189402311 - Marc2 protein_coding processed_transcript MGP_CASTEiJ_T0023365.1 MGP_CASTEiJ_G0016254.1 mouse_genomes_project 1 189385857 189402587 - Marc2 protein_coding retained_intron MGP_CASTEiJ_T0011701.1 MGP_CASTEiJ_G0009864.1 mouse_genomes_project 1 48810881 48811601 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101957.1 MGP_CASTEiJ_G0038682.1 mouse_genomes_project 1 185334493 185334625 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0005687.1 MGP_CASTEiJ_G0004784.1 mouse_genomes_project 1 95329873 95337063 + 4930440C22Rik lincRNA lincRNA MGP_CASTEiJ_T0005688.1 MGP_CASTEiJ_G0004784.1 mouse_genomes_project 1 95330232 95337083 + 4930440C22Rik lincRNA lincRNA MGP_CASTEiJ_T0023514.1 MGP_CASTEiJ_G0016283.1 mouse_genomes_project 1 196064840 196077314 + Batf3 protein_coding processed_transcript MGP_CASTEiJ_T0023515.1 MGP_CASTEiJ_G0016283.1 mouse_genomes_project 1 196064873 196077773 + Batf3 protein_coding processed_transcript MGP_CASTEiJ_T0023516.1 MGP_CASTEiJ_G0016283.1 mouse_genomes_project 1 196065318 196077771 + MGP_CASTEiJ_P0023516 Batf3 protein_coding protein_coding MGP_CASTEiJ_T0023517.1 MGP_CASTEiJ_G0016283.1 mouse_genomes_project 1 196065376 196077314 + Batf3 protein_coding processed_transcript MGP_CASTEiJ_T0023518.1 MGP_CASTEiJ_G0016283.1 mouse_genomes_project 1 196067460 196077737 + Batf3 protein_coding retained_intron MGP_CASTEiJ_T0011905.1 MGP_CASTEiJ_G0010068.1 mouse_genomes_project 1 135049364 135050127 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022804.1 MGP_CASTEiJ_G0016113.1 mouse_genomes_project 1 175273967 175292009 - MGP_CASTEiJ_P0022804 Slamf7 protein_coding protein_coding MGP_CASTEiJ_T0022805.1 MGP_CASTEiJ_G0016113.1 mouse_genomes_project 1 175278734 175292089 - MGP_CASTEiJ_P0022805 Slamf7 protein_coding protein_coding MGP_CASTEiJ_T0022806.1 MGP_CASTEiJ_G0016113.1 mouse_genomes_project 1 175279247 175292009 - MGP_CASTEiJ_P0022806 Slamf7 protein_coding protein_coding MGP_CASTEiJ_T0021645.1 MGP_CASTEiJ_G0015884.1 mouse_genomes_project 1 137747862 137819249 + MGP_CASTEiJ_P0021645 Cacna1s protein_coding protein_coding MGP_CASTEiJ_T0021646.1 MGP_CASTEiJ_G0015884.1 mouse_genomes_project 1 137747896 137819254 + MGP_CASTEiJ_P0021646 Cacna1s protein_coding protein_coding MGP_CASTEiJ_T0021647.1 MGP_CASTEiJ_G0015884.1 mouse_genomes_project 1 137748013 137819541 + MGP_CASTEiJ_P0021647 Cacna1s protein_coding protein_coding MGP_CASTEiJ_T0021648.1 MGP_CASTEiJ_G0015884.1 mouse_genomes_project 1 137770385 137819248 + MGP_CASTEiJ_P0021648 Cacna1s protein_coding protein_coding MGP_CASTEiJ_T0021649.1 MGP_CASTEiJ_G0015884.1 mouse_genomes_project 1 137805132 137811768 + Cacna1s protein_coding retained_intron MGP_CASTEiJ_T0021650.1 MGP_CASTEiJ_G0015884.1 mouse_genomes_project 1 137816974 137819248 + Cacna1s protein_coding processed_transcript MGP_CASTEiJ_T0019268.1 MGP_CASTEiJ_G0015405.1 mouse_genomes_project 1 57334429 57379426 - MGP_CASTEiJ_P0019268 Orc2 protein_coding protein_coding MGP_CASTEiJ_T0019269.1 MGP_CASTEiJ_G0015405.1 mouse_genomes_project 1 57335860 57375697 - MGP_CASTEiJ_P0019269 Orc2 protein_coding protein_coding MGP_CASTEiJ_T0019270.1 MGP_CASTEiJ_G0015405.1 mouse_genomes_project 1 57355519 57356657 - Orc2 protein_coding retained_intron MGP_CASTEiJ_T0019271.1 MGP_CASTEiJ_G0015405.1 mouse_genomes_project 1 57363061 57379242 - MGP_CASTEiJ_P0019271 Orc2 protein_coding protein_coding MGP_CASTEiJ_T0019272.1 MGP_CASTEiJ_G0015405.1 mouse_genomes_project 1 57374827 57379272 - MGP_CASTEiJ_P0019272 Orc2 protein_coding protein_coding MGP_CASTEiJ_T0098785.1 MGP_CASTEiJ_G0035716.1 mouse_genomes_project 1 51432171 51434640 - Gm29670 sense_intronic sense_intronic MGP_CASTEiJ_T0101925.1 MGP_CASTEiJ_G0038650.1 mouse_genomes_project 1 93049057 93049103 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002794.1 MGP_CASTEiJ_G0002642.1 mouse_genomes_project 1 136745733 136749939 + Gm10535 antisense antisense MGP_CASTEiJ_T0018893.1 MGP_CASTEiJ_G0015337.1 mouse_genomes_project 1 42738024 42744009 - MGP_CASTEiJ_P0018893 Gm8251 protein_coding protein_coding MGP_CASTEiJ_T0023195.1 MGP_CASTEiJ_G0016217.1 mouse_genomes_project 1 185143701 185159510 - MGP_CASTEiJ_P0023195 H3f3a protein_coding protein_coding MGP_CASTEiJ_T0023196.1 MGP_CASTEiJ_G0016217.1 mouse_genomes_project 1 185148618 185159821 - MGP_CASTEiJ_P0023196 H3f3a protein_coding protein_coding MGP_CASTEiJ_T0023197.1 MGP_CASTEiJ_G0016217.1 mouse_genomes_project 1 185148618 185159412 - MGP_CASTEiJ_P0023197 H3f3a protein_coding protein_coding MGP_CASTEiJ_T0023198.1 MGP_CASTEiJ_G0016217.1 mouse_genomes_project 1 185155623 185159481 - H3f3a protein_coding retained_intron MGP_CASTEiJ_T0023199.1 MGP_CASTEiJ_G0016217.1 mouse_genomes_project 1 185156105 185159481 - MGP_CASTEiJ_P0023199 H3f3a protein_coding protein_coding MGP_CASTEiJ_T0023200.1 MGP_CASTEiJ_G0016217.1 mouse_genomes_project 1 185156113 185159481 - MGP_CASTEiJ_P0023200 H3f3a protein_coding protein_coding MGP_CASTEiJ_T0000425.1 MGP_CASTEiJ_G0000371.1 mouse_genomes_project 1 41054512 41058368 + TEC TEC MGP_CASTEiJ_T0018840.1 MGP_CASTEiJ_G0015326.1 mouse_genomes_project 1 41280475 41288644 + MGP_CASTEiJ_P0018840 Pou3f3 protein_coding protein_coding MGP_CASTEiJ_T0098787.1 MGP_CASTEiJ_G0035718.1 mouse_genomes_project 1 68966301 68969775 - Gm29112 sense_intronic sense_intronic MGP_CASTEiJ_T0020095.1 MGP_CASTEiJ_G0015552.1 mouse_genomes_project 1 78269196 78273932 - protein_coding processed_transcript MGP_CASTEiJ_T0018539.1 MGP_CASTEiJ_G0015269.1 mouse_genomes_project 1 34196269 34239772 + MGP_CASTEiJ_P0018539 Hs6st1 protein_coding protein_coding MGP_CASTEiJ_T0018540.1 MGP_CASTEiJ_G0015269.1 mouse_genomes_project 1 34232754 34238306 + Hs6st1 protein_coding retained_intron MGP_CASTEiJ_T0020171.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82677750 82705271 + MGP_CASTEiJ_P0020171 Mff protein_coding unknown_likely_coding MGP_CASTEiJ_T0020172.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82677766 82705261 + MGP_CASTEiJ_P0020172 Mff protein_coding protein_coding MGP_CASTEiJ_T0020173.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82677794 82688371 + Mff protein_coding processed_transcript MGP_CASTEiJ_T0020174.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82677795 82705258 + MGP_CASTEiJ_P0020174 Mff protein_coding protein_coding MGP_CASTEiJ_T0020175.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82677801 82705261 + MGP_CASTEiJ_P0020175 Mff protein_coding protein_coding MGP_CASTEiJ_T0020176.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82677810 82689590 + Mff protein_coding retained_intron MGP_CASTEiJ_T0020177.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82677816 82705221 + MGP_CASTEiJ_P0020177 Mff protein_coding protein_coding MGP_CASTEiJ_T0020178.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82677824 82705265 + MGP_CASTEiJ_P0020178 Mff protein_coding protein_coding MGP_CASTEiJ_T0020179.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82682117 82705261 + MGP_CASTEiJ_P0020179 Mff protein_coding protein_coding MGP_CASTEiJ_T0020180.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82682160 82704500 + MGP_CASTEiJ_P0020180 Mff protein_coding protein_coding MGP_CASTEiJ_T0020181.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82682214 82703439 + MGP_CASTEiJ_P0020181 Mff protein_coding protein_coding MGP_CASTEiJ_T0020182.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82682214 82694769 + MGP_CASTEiJ_P0020182 Mff protein_coding protein_coding MGP_CASTEiJ_T0020183.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82688333 82705031 + MGP_CASTEiJ_P0020183 Mff protein_coding protein_coding MGP_CASTEiJ_T0020184.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82694523 82704578 + Mff protein_coding retained_intron MGP_CASTEiJ_T0020185.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82694862 82698781 + Mff protein_coding retained_intron MGP_CASTEiJ_T0020186.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82699795 82704759 + Mff protein_coding retained_intron MGP_CASTEiJ_T0020187.1 MGP_CASTEiJ_G0015572.1 mouse_genomes_project 1 82701246 82704587 + Mff protein_coding retained_intron MGP_CASTEiJ_T0011879.1 MGP_CASTEiJ_G0010042.1 mouse_genomes_project 1 120683066 120683296 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101710.1 MGP_CASTEiJ_G0038528.1 mouse_genomes_project 1 18880245 18895814 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101711.1 MGP_CASTEiJ_G0038528.1 mouse_genomes_project 1 18880607 18895635 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0101712.1 MGP_CASTEiJ_G0038528.1 mouse_genomes_project 1 18885050 18895749 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0005857.1 MGP_CASTEiJ_G0004919.1 mouse_genomes_project 1 188023053 188023583 + Gm33973 lincRNA lincRNA MGP_CASTEiJ_T0000432.1 MGP_CASTEiJ_G0000378.1 mouse_genomes_project 1 45959720 45961655 - TEC TEC MGP_CASTEiJ_T0002797.1 MGP_CASTEiJ_G0002645.1 mouse_genomes_project 1 137261875 137277014 + Gm4793 antisense antisense MGP_CASTEiJ_T0000603.1 MGP_CASTEiJ_G0000548.1 mouse_genomes_project 1 136412929 136415022 - TEC TEC MGP_CASTEiJ_T0021377.1 MGP_CASTEiJ_G0015826.1 mouse_genomes_project 1 134346064 134406887 + MGP_CASTEiJ_P0021377 Lrrn2 protein_coding protein_coding MGP_CASTEiJ_T0021378.1 MGP_CASTEiJ_G0015826.1 mouse_genomes_project 1 134346146 134404030 + Lrrn2 protein_coding processed_transcript MGP_CASTEiJ_T0009223.1 MGP_CASTEiJ_G0007411.1 mouse_genomes_project 1 6087321 6087431 + Gm24276 miRNA miRNA MGP_CASTEiJ_T0023354.1 MGP_CASTEiJ_G0016253.1 mouse_genomes_project 1 189340625 189368110 - MGP_CASTEiJ_P0023354 Marc1 protein_coding protein_coding MGP_CASTEiJ_T0023355.1 MGP_CASTEiJ_G0016253.1 mouse_genomes_project 1 189341568 189367926 - MGP_CASTEiJ_P0023355 Marc1 protein_coding protein_coding MGP_CASTEiJ_T0019683.1 MGP_CASTEiJ_G0015481.1 mouse_genomes_project 1 71639182 71723301 - MGP_CASTEiJ_P0019683 Mreg protein_coding unknown_likely_coding MGP_CASTEiJ_T0019684.1 MGP_CASTEiJ_G0015481.1 mouse_genomes_project 1 71662435 71723420 - MGP_CASTEiJ_P0019684 Mreg protein_coding protein_coding MGP_CASTEiJ_T0023210.1 MGP_CASTEiJ_G0016222.1 mouse_genomes_project 1 185296656 185307457 + MGP_CASTEiJ_P0023210 Tmem63a protein_coding protein_coding MGP_CASTEiJ_T0023211.1 MGP_CASTEiJ_G0016222.1 mouse_genomes_project 1 185296770 185310162 + MGP_CASTEiJ_P0023211 Tmem63a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023212.1 MGP_CASTEiJ_G0016222.1 mouse_genomes_project 1 185296771 185333449 + MGP_CASTEiJ_P0023212 Tmem63a protein_coding protein_coding MGP_CASTEiJ_T0023213.1 MGP_CASTEiJ_G0016222.1 mouse_genomes_project 1 185296886 185312696 + MGP_CASTEiJ_P0023213 Tmem63a protein_coding protein_coding MGP_CASTEiJ_T0023214.1 MGP_CASTEiJ_G0016222.1 mouse_genomes_project 1 185298346 185333440 + MGP_CASTEiJ_P0023214 Tmem63a protein_coding protein_coding MGP_CASTEiJ_T0023215.1 MGP_CASTEiJ_G0016222.1 mouse_genomes_project 1 185300217 185301026 + MGP_CASTEiJ_P0023215 Tmem63a protein_coding protein_coding MGP_CASTEiJ_T0023216.1 MGP_CASTEiJ_G0016222.1 mouse_genomes_project 1 185300273 185304109 + MGP_CASTEiJ_P0023216 Tmem63a protein_coding protein_coding MGP_CASTEiJ_T0023217.1 MGP_CASTEiJ_G0016222.1 mouse_genomes_project 1 185316612 185317398 + Tmem63a protein_coding retained_intron MGP_CASTEiJ_T0018552.1 MGP_CASTEiJ_G0015271.1 mouse_genomes_project 1 34414895 34423767 - MGP_CASTEiJ_P0018552 Neurl3 protein_coding protein_coding MGP_CASTEiJ_T0018553.1 MGP_CASTEiJ_G0015271.1 mouse_genomes_project 1 34419187 34424812 - MGP_CASTEiJ_P0018553 Neurl3 protein_coding protein_coding MGP_CASTEiJ_T0098797.1 MGP_CASTEiJ_G0035727.1 mouse_genomes_project 1 139792181 139793424 + Gm26930 sense_intronic sense_intronic MGP_CASTEiJ_T0009313.1 MGP_CASTEiJ_G0007501.1 mouse_genomes_project 1 182525068 182525189 - Gm27458 miRNA miRNA MGP_CASTEiJ_T0021169.1 MGP_CASTEiJ_G0015780.1 mouse_genomes_project 1 129597146 129654407 - MGP_CASTEiJ_P0021169 Dars protein_coding protein_coding MGP_CASTEiJ_T0021170.1 MGP_CASTEiJ_G0015780.1 mouse_genomes_project 1 129608196 129614028 - Dars protein_coding retained_intron MGP_CASTEiJ_T0021171.1 MGP_CASTEiJ_G0015780.1 mouse_genomes_project 1 129647712 129654416 - MGP_CASTEiJ_P0021171 Dars protein_coding protein_coding MGP_CASTEiJ_T0011788.1 MGP_CASTEiJ_G0009951.1 mouse_genomes_project 1 79890459 79890723 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100252.1 MGP_CASTEiJ_G0037165.1 mouse_genomes_project 1 13133973 13134085 - Gm25227 snoRNA snoRNA MGP_CASTEiJ_T0000611.1 MGP_CASTEiJ_G0000556.1 mouse_genomes_project 1 139615732 139620406 - TEC TEC MGP_CASTEiJ_T0011590.1 MGP_CASTEiJ_G0009753.1 mouse_genomes_project 1 10024308 10024995 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019372.1 MGP_CASTEiJ_G0015424.1 mouse_genomes_project 1 58957820 58967686 - Ica1l protein_coding processed_transcript MGP_CASTEiJ_T0019373.1 MGP_CASTEiJ_G0015424.1 mouse_genomes_project 1 58965817 59025060 - MGP_CASTEiJ_P0019373 Ica1l protein_coding protein_coding MGP_CASTEiJ_T0019374.1 MGP_CASTEiJ_G0015424.1 mouse_genomes_project 1 58965824 59025095 - MGP_CASTEiJ_P0019374 Ica1l protein_coding protein_coding MGP_CASTEiJ_T0019375.1 MGP_CASTEiJ_G0015424.1 mouse_genomes_project 1 58967884 59008538 - MGP_CASTEiJ_P0019375 Ica1l protein_coding protein_coding MGP_CASTEiJ_T0019376.1 MGP_CASTEiJ_G0015424.1 mouse_genomes_project 1 58994229 59002694 - Ica1l protein_coding retained_intron MGP_CASTEiJ_T0019377.1 MGP_CASTEiJ_G0015424.1 mouse_genomes_project 1 58999747 59025149 - Ica1l protein_coding processed_transcript MGP_CASTEiJ_T0020932.1 MGP_CASTEiJ_G0015736.1 mouse_genomes_project 1 111640423 111738241 - MGP_CASTEiJ_P0020932 Cdh19 protein_coding protein_coding MGP_CASTEiJ_T0020933.1 MGP_CASTEiJ_G0015736.1 mouse_genomes_project 1 111706877 111738464 - Cdh19 protein_coding processed_transcript MGP_CASTEiJ_T0022866.1 MGP_CASTEiJ_G0016125.1 mouse_genomes_project 1 175872963 175886125 - MGP_CASTEiJ_P0022866 Casq1 protein_coding protein_coding MGP_CASTEiJ_T0022867.1 MGP_CASTEiJ_G0016125.1 mouse_genomes_project 1 175872964 175878302 - Casq1 protein_coding retained_intron MGP_CASTEiJ_T0022868.1 MGP_CASTEiJ_G0016125.1 mouse_genomes_project 1 175879490 175885972 - MGP_CASTEiJ_P0022868 Casq1 protein_coding protein_coding MGP_CASTEiJ_T0022935.1 MGP_CASTEiJ_G0016149.1 mouse_genomes_project 1 177062534 177064399 - Ackr1 protein_coding processed_transcript MGP_CASTEiJ_T0022936.1 MGP_CASTEiJ_G0016149.1 mouse_genomes_project 1 177062538 177064153 - MGP_CASTEiJ_P0022936 Ackr1 protein_coding protein_coding MGP_CASTEiJ_T0022937.1 MGP_CASTEiJ_G0016149.1 mouse_genomes_project 1 177062540 177064322 - MGP_CASTEiJ_P0022937 Ackr1 protein_coding protein_coding MGP_CASTEiJ_T0018927.1 MGP_CASTEiJ_G0015343.1 mouse_genomes_project 1 43208512 43447635 + MGP_CASTEiJ_P0018927 Gulp1 protein_coding protein_coding MGP_CASTEiJ_T0018928.1 MGP_CASTEiJ_G0015343.1 mouse_genomes_project 1 43208694 43439070 + MGP_CASTEiJ_P0018928 Gulp1 protein_coding protein_coding MGP_CASTEiJ_T0018929.1 MGP_CASTEiJ_G0015343.1 mouse_genomes_project 1 43208694 43447623 + MGP_CASTEiJ_P0018929 Gulp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018930.1 MGP_CASTEiJ_G0015343.1 mouse_genomes_project 1 43208728 43438422 + Gulp1 protein_coding processed_transcript MGP_CASTEiJ_T0018931.1 MGP_CASTEiJ_G0015343.1 mouse_genomes_project 1 43209598 43361387 + MGP_CASTEiJ_P0018931 Gulp1 protein_coding protein_coding MGP_CASTEiJ_T0018932.1 MGP_CASTEiJ_G0015343.1 mouse_genomes_project 1 43348733 43447622 + MGP_CASTEiJ_P0018932 Gulp1 protein_coding protein_coding MGP_CASTEiJ_T0021970.1 MGP_CASTEiJ_G0015945.1 mouse_genomes_project 1 156429442 156481215 + MGP_CASTEiJ_P0021970 Rgs8 protein_coding protein_coding MGP_CASTEiJ_T0021971.1 MGP_CASTEiJ_G0015945.1 mouse_genomes_project 1 156438877 156471955 + MGP_CASTEiJ_P0021971 Rgs8 protein_coding protein_coding MGP_CASTEiJ_T0021972.1 MGP_CASTEiJ_G0015945.1 mouse_genomes_project 1 156443171 156473877 + MGP_CASTEiJ_P0021972 Rgs8 protein_coding protein_coding MGP_CASTEiJ_T0021973.1 MGP_CASTEiJ_G0015945.1 mouse_genomes_project 1 156443814 156473669 + MGP_CASTEiJ_P0021973 Rgs8 protein_coding protein_coding MGP_CASTEiJ_T0021974.1 MGP_CASTEiJ_G0015945.1 mouse_genomes_project 1 156443852 156476464 + MGP_CASTEiJ_P0021974 Rgs8 protein_coding protein_coding MGP_CASTEiJ_T0021975.1 MGP_CASTEiJ_G0015945.1 mouse_genomes_project 1 156444133 156472005 + MGP_CASTEiJ_P0021975 Rgs8 protein_coding protein_coding MGP_CASTEiJ_T0021976.1 MGP_CASTEiJ_G0015945.1 mouse_genomes_project 1 156444197 156472010 + MGP_CASTEiJ_P0021976 Rgs8 protein_coding protein_coding MGP_CASTEiJ_T0021977.1 MGP_CASTEiJ_G0015945.1 mouse_genomes_project 1 156444213 156473838 + MGP_CASTEiJ_P0021977 Rgs8 protein_coding protein_coding MGP_CASTEiJ_T0021978.1 MGP_CASTEiJ_G0015945.1 mouse_genomes_project 1 156444249 156478554 + MGP_CASTEiJ_P0021978 Rgs8 protein_coding protein_coding MGP_CASTEiJ_T0021979.1 MGP_CASTEiJ_G0015945.1 mouse_genomes_project 1 156446027 156450262 + Rgs8 protein_coding processed_transcript MGP_CASTEiJ_T0021495.1 MGP_CASTEiJ_G0015855.1 mouse_genomes_project 1 135983727 135986246 + Cyb5r1 protein_coding processed_transcript MGP_CASTEiJ_T0021496.1 MGP_CASTEiJ_G0015855.1 mouse_genomes_project 1 135983909 135989974 + MGP_CASTEiJ_P0021496 Cyb5r1 protein_coding protein_coding MGP_CASTEiJ_T0021497.1 MGP_CASTEiJ_G0015855.1 mouse_genomes_project 1 135983909 135989970 + MGP_CASTEiJ_P0021497 Cyb5r1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021498.1 MGP_CASTEiJ_G0015855.1 mouse_genomes_project 1 135984122 135985858 + Cyb5r1 protein_coding processed_transcript MGP_CASTEiJ_T0021499.1 MGP_CASTEiJ_G0015855.1 mouse_genomes_project 1 135984130 135985850 + Cyb5r1 protein_coding processed_transcript MGP_CASTEiJ_T0021500.1 MGP_CASTEiJ_G0015855.1 mouse_genomes_project 1 135984131 135987922 + MGP_CASTEiJ_P0021500 Cyb5r1 protein_coding protein_coding MGP_CASTEiJ_T0021501.1 MGP_CASTEiJ_G0015855.1 mouse_genomes_project 1 135984147 135987121 + Cyb5r1 protein_coding retained_intron MGP_CASTEiJ_T0021502.1 MGP_CASTEiJ_G0015855.1 mouse_genomes_project 1 135984155 135988256 + Cyb5r1 protein_coding retained_intron MGP_CASTEiJ_T0021503.1 MGP_CASTEiJ_G0015855.1 mouse_genomes_project 1 135984440 135989221 + MGP_CASTEiJ_P0021503 Cyb5r1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021504.1 MGP_CASTEiJ_G0015855.1 mouse_genomes_project 1 135984440 135985923 + MGP_CASTEiJ_P0021504 Cyb5r1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0005636.1 MGP_CASTEiJ_G0004739.1 mouse_genomes_project 1 73211801 73343595 - 6030407O03Rik lincRNA lincRNA MGP_CASTEiJ_T0005637.1 MGP_CASTEiJ_G0004739.1 mouse_genomes_project 1 73211801 73474040 - 6030407O03Rik lincRNA lincRNA MGP_CASTEiJ_T0019611.1 MGP_CASTEiJ_G0015469.1 mouse_genomes_project 1 66063732 66114527 - MGP_CASTEiJ_P0019611 Acadl protein_coding protein_coding MGP_CASTEiJ_T0019612.1 MGP_CASTEiJ_G0015469.1 mouse_genomes_project 1 66092510 66109644 - Acadl protein_coding processed_transcript MGP_CASTEiJ_T0011914.1 MGP_CASTEiJ_G0010077.1 mouse_genomes_project 1 140796835 140797274 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005573.1 MGP_CASTEiJ_G0004692.1 mouse_genomes_project 1 49879019 49881505 + Gm29325 lincRNA lincRNA MGP_CASTEiJ_T0002802.1 MGP_CASTEiJ_G0002650.1 mouse_genomes_project 1 142824674 142916497 - 4930590L20Rik antisense antisense MGP_CASTEiJ_T0002653.1 MGP_CASTEiJ_G0002538.1 mouse_genomes_project 1 7305570 7316234 + Gm15818 antisense antisense MGP_CASTEiJ_T0021712.1 MGP_CASTEiJ_G0015897.1 mouse_genomes_project 1 140705627 140731076 - MGP_CASTEiJ_P0021712 Lhx9 protein_coding protein_coding MGP_CASTEiJ_T0021713.1 MGP_CASTEiJ_G0015897.1 mouse_genomes_project 1 140705627 140730118 - MGP_CASTEiJ_P0021713 Lhx9 protein_coding protein_coding MGP_CASTEiJ_T0021714.1 MGP_CASTEiJ_G0015897.1 mouse_genomes_project 1 140705627 140724217 - MGP_CASTEiJ_P0021714 Lhx9 protein_coding protein_coding MGP_CASTEiJ_T0021715.1 MGP_CASTEiJ_G0015897.1 mouse_genomes_project 1 140709073 140723794 - MGP_CASTEiJ_P0021715 Lhx9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021716.1 MGP_CASTEiJ_G0015897.1 mouse_genomes_project 1 140709596 140730207 - MGP_CASTEiJ_P0021716 Lhx9 protein_coding protein_coding MGP_CASTEiJ_T0021717.1 MGP_CASTEiJ_G0015897.1 mouse_genomes_project 1 140712677 140724189 - MGP_CASTEiJ_P0021717 Lhx9 protein_coding protein_coding MGP_CASTEiJ_T0021718.1 MGP_CASTEiJ_G0015897.1 mouse_genomes_project 1 140713470 140715398 - Lhx9 protein_coding retained_intron MGP_CASTEiJ_T0021719.1 MGP_CASTEiJ_G0015897.1 mouse_genomes_project 1 140714606 140724214 - MGP_CASTEiJ_P0021719 Lhx9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011858.1 MGP_CASTEiJ_G0010021.1 mouse_genomes_project 1 112846380 112849510 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023618.1 MGP_CASTEiJ_G0016304.1 mouse_genomes_project 1 198172030 198200083 - MGP_CASTEiJ_P0023618 Traf3ip3 protein_coding protein_coding MGP_CASTEiJ_T0023619.1 MGP_CASTEiJ_G0016304.1 mouse_genomes_project 1 198172071 198200296 - MGP_CASTEiJ_P0023619 Traf3ip3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023620.1 MGP_CASTEiJ_G0016304.1 mouse_genomes_project 1 198172081 198200296 - MGP_CASTEiJ_P0023620 Traf3ip3 protein_coding protein_coding MGP_CASTEiJ_T0023621.1 MGP_CASTEiJ_G0016304.1 mouse_genomes_project 1 198175762 198181327 - MGP_CASTEiJ_P0023621 Traf3ip3 protein_coding protein_coding MGP_CASTEiJ_T0023622.1 MGP_CASTEiJ_G0016304.1 mouse_genomes_project 1 198175766 198196590 - Traf3ip3 protein_coding retained_intron MGP_CASTEiJ_T0023623.1 MGP_CASTEiJ_G0016304.1 mouse_genomes_project 1 198181082 198190771 - MGP_CASTEiJ_P0023623 Traf3ip3 protein_coding protein_coding MGP_CASTEiJ_T0023624.1 MGP_CASTEiJ_G0016304.1 mouse_genomes_project 1 198181171 198183657 - MGP_CASTEiJ_P0023624 Traf3ip3 protein_coding protein_coding MGP_CASTEiJ_T0023625.1 MGP_CASTEiJ_G0016304.1 mouse_genomes_project 1 198181695 198200204 - Traf3ip3 protein_coding retained_intron MGP_CASTEiJ_T0023626.1 MGP_CASTEiJ_G0016304.1 mouse_genomes_project 1 198190836 198200265 - Traf3ip3 protein_coding retained_intron MGP_CASTEiJ_T0023627.1 MGP_CASTEiJ_G0016304.1 mouse_genomes_project 1 198192373 198196739 - MGP_CASTEiJ_P0023627 Traf3ip3 protein_coding protein_coding MGP_CASTEiJ_T0023628.1 MGP_CASTEiJ_G0016304.1 mouse_genomes_project 1 198196795 198200247 - Traf3ip3 protein_coding processed_transcript MGP_CASTEiJ_T0023629.1 MGP_CASTEiJ_G0016304.1 mouse_genomes_project 1 198196802 198200251 - Traf3ip3 protein_coding processed_transcript MGP_CASTEiJ_T0023630.1 MGP_CASTEiJ_G0016304.1 mouse_genomes_project 1 198199644 198200452 - Traf3ip3 protein_coding processed_transcript MGP_CASTEiJ_T0002841.1 MGP_CASTEiJ_G0002681.1 mouse_genomes_project 1 170596656 170607290 + Gm37982 antisense antisense MGP_CASTEiJ_T0009295.1 MGP_CASTEiJ_G0007483.1 mouse_genomes_project 1 158173001 158173125 + Gm22569 miRNA miRNA MGP_CASTEiJ_T0005711.1 MGP_CASTEiJ_G0004803.1 mouse_genomes_project 1 119065852 119072014 + Gm28867 lincRNA lincRNA MGP_CASTEiJ_T0021482.1 MGP_CASTEiJ_G0015851.1 mouse_genomes_project 1 135861842 135864402 + MGP_CASTEiJ_P0021482 Myog protein_coding protein_coding MGP_CASTEiJ_T0010922.1 MGP_CASTEiJ_G0009110.1 mouse_genomes_project 1 85691663 85691873 + Gm22906 misc_RNA misc_RNA MGP_CASTEiJ_T0020301.1 MGP_CASTEiJ_G0015593.1 mouse_genomes_project 1 86029816 86042704 - MGP_CASTEiJ_P0020301 Htr2b protein_coding protein_coding MGP_CASTEiJ_T0020302.1 MGP_CASTEiJ_G0015593.1 mouse_genomes_project 1 86030892 86041406 - MGP_CASTEiJ_P0020302 Htr2b protein_coding protein_coding MGP_CASTEiJ_T0021075.1 MGP_CASTEiJ_G0015764.1 mouse_genomes_project 1 126468587 126514925 - MGP_CASTEiJ_P0021075 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021076.1 MGP_CASTEiJ_G0015764.1 mouse_genomes_project 1 126469860 126515078 - MGP_CASTEiJ_P0021076 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021077.1 MGP_CASTEiJ_G0015764.1 mouse_genomes_project 1 126472706 126474534 - protein_coding retained_intron MGP_CASTEiJ_T0021078.1 MGP_CASTEiJ_G0015764.1 mouse_genomes_project 1 126482112 126485191 - protein_coding retained_intron MGP_CASTEiJ_T0021079.1 MGP_CASTEiJ_G0015764.1 mouse_genomes_project 1 126482131 126515324 - MGP_CASTEiJ_P0021079 protein_coding protein_coding MGP_CASTEiJ_T0021080.1 MGP_CASTEiJ_G0015764.1 mouse_genomes_project 1 126482161 126513376 - MGP_CASTEiJ_P0021080 protein_coding protein_coding MGP_CASTEiJ_T0021081.1 MGP_CASTEiJ_G0015764.1 mouse_genomes_project 1 126483543 126515051 - MGP_CASTEiJ_P0021081 protein_coding protein_coding MGP_CASTEiJ_T0021082.1 MGP_CASTEiJ_G0015764.1 mouse_genomes_project 1 126483600 126515304 - MGP_CASTEiJ_P0021082 protein_coding protein_coding MGP_CASTEiJ_T0021083.1 MGP_CASTEiJ_G0015764.1 mouse_genomes_project 1 126483609 126515067 - MGP_CASTEiJ_P0021083 protein_coding protein_coding MGP_CASTEiJ_T0021084.1 MGP_CASTEiJ_G0015764.1 mouse_genomes_project 1 126494005 126515025 - protein_coding retained_intron MGP_CASTEiJ_T0011861.1 MGP_CASTEiJ_G0010024.1 mouse_genomes_project 1 112973615 112974281 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000347.1 MGP_CASTEiJ_G0000296.1 mouse_genomes_project 1 10699762 10700458 - TEC TEC MGP_CASTEiJ_T0011624.1 MGP_CASTEiJ_G0009787.1 mouse_genomes_project 1 23754972 23755528 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000671.1 MGP_CASTEiJ_G0000615.1 mouse_genomes_project 1 162687745 162690014 + TEC TEC MGP_CASTEiJ_T0002878.1 MGP_CASTEiJ_G0002712.1 mouse_genomes_project 1 192789570 192791985 - 9330162B11Rik antisense antisense MGP_CASTEiJ_T0022934.1 MGP_CASTEiJ_G0016148.1 mouse_genomes_project 1 176995644 176999702 - MGP_CASTEiJ_P0022934 Mptx2 protein_coding protein_coding MGP_CASTEiJ_T0101500.1 MGP_CASTEiJ_G0038403.1 mouse_genomes_project 1 190097373 190115052 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101501.1 MGP_CASTEiJ_G0038403.1 mouse_genomes_project 1 190114274 190114911 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101919.1 MGP_CASTEiJ_G0038644.1 mouse_genomes_project 1 88269696 88269947 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0021266.1 MGP_CASTEiJ_G0015804.1 mouse_genomes_project 1 133000087 133012945 + MGP_CASTEiJ_P0021266 Avpr1b protein_coding protein_coding MGP_CASTEiJ_T0021267.1 MGP_CASTEiJ_G0015804.1 mouse_genomes_project 1 133000578 133010693 + MGP_CASTEiJ_P0021267 Avpr1b protein_coding protein_coding MGP_CASTEiJ_T0000752.1 MGP_CASTEiJ_G0000694.1 mouse_genomes_project 1 193897299 193898825 + TEC TEC MGP_CASTEiJ_T0018836.1 MGP_CASTEiJ_G0015324.1 mouse_genomes_project 1 39143991 39165014 - MGP_CASTEiJ_P0018836 Mfsd9 protein_coding protein_coding MGP_CASTEiJ_T0018837.1 MGP_CASTEiJ_G0015324.1 mouse_genomes_project 1 39143994 39165038 - MGP_CASTEiJ_P0018837 Mfsd9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018838.1 MGP_CASTEiJ_G0015324.1 mouse_genomes_project 1 39155814 39165008 - Mfsd9 protein_coding retained_intron MGP_CASTEiJ_T0011697.1 MGP_CASTEiJ_G0009860.1 mouse_genomes_project 1 48037410 48037850 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021553.1 MGP_CASTEiJ_G0015866.1 mouse_genomes_project 1 136785261 136794607 + MGP_CASTEiJ_P0021553 Arl8a protein_coding protein_coding MGP_CASTEiJ_T0021554.1 MGP_CASTEiJ_G0015866.1 mouse_genomes_project 1 136786106 136794607 + MGP_CASTEiJ_P0021554 Arl8a protein_coding protein_coding MGP_CASTEiJ_T0021555.1 MGP_CASTEiJ_G0015866.1 mouse_genomes_project 1 136790436 136792668 + Arl8a protein_coding retained_intron MGP_CASTEiJ_T0021556.1 MGP_CASTEiJ_G0015866.1 mouse_genomes_project 1 136792554 136793665 + Arl8a protein_coding retained_intron MGP_CASTEiJ_T0018040.1 MGP_CASTEiJ_G0015169.1 mouse_genomes_project 1 3170853 3174545 - MGP_CASTEiJ_P0018040 Npbwr1 protein_coding protein_coding MGP_CASTEiJ_T0005873.1 MGP_CASTEiJ_G0004929.1 mouse_genomes_project 1 189662027 189667257 + 4930433J02Rik lincRNA lincRNA MGP_CASTEiJ_T0011660.1 MGP_CASTEiJ_G0009823.1 mouse_genomes_project 1 36744128 36744657 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100300.1 MGP_CASTEiJ_G0037213.1 mouse_genomes_project 1 103699082 103699237 - Gm23965 snoRNA snoRNA MGP_CASTEiJ_T0005526.1 MGP_CASTEiJ_G0004662.1 mouse_genomes_project 1 32469900 32476141 - Gm37233 lincRNA lincRNA MGP_CASTEiJ_T0022814.1 MGP_CASTEiJ_G0016117.1 mouse_genomes_project 1 175553821 175588925 + MGP_CASTEiJ_P0022814 Slamf6 protein_coding protein_coding MGP_CASTEiJ_T0022815.1 MGP_CASTEiJ_G0016117.1 mouse_genomes_project 1 175553843 175579670 + MGP_CASTEiJ_P0022815 Slamf6 protein_coding protein_coding MGP_CASTEiJ_T0022816.1 MGP_CASTEiJ_G0016117.1 mouse_genomes_project 1 175553988 175554985 + Slamf6 protein_coding retained_intron MGP_CASTEiJ_T0022817.1 MGP_CASTEiJ_G0016117.1 mouse_genomes_project 1 175554014 175583834 + MGP_CASTEiJ_P0022817 Slamf6 protein_coding protein_coding MGP_CASTEiJ_T0022818.1 MGP_CASTEiJ_G0016117.1 mouse_genomes_project 1 175555797 175569937 + MGP_CASTEiJ_P0022818 Slamf6 protein_coding protein_coding MGP_CASTEiJ_T0022819.1 MGP_CASTEiJ_G0016117.1 mouse_genomes_project 1 175567333 175570274 + Slamf6 protein_coding retained_intron MGP_CASTEiJ_T0022820.1 MGP_CASTEiJ_G0016117.1 mouse_genomes_project 1 175578386 175584619 + Slamf6 protein_coding processed_transcript MGP_CASTEiJ_T0023066.1 MGP_CASTEiJ_G0016193.1 mouse_genomes_project 1 181818591 181852993 - MGP_CASTEiJ_P0023066 Adss protein_coding protein_coding MGP_CASTEiJ_T0023067.1 MGP_CASTEiJ_G0016193.1 mouse_genomes_project 1 181818806 181825015 - Adss protein_coding retained_intron MGP_CASTEiJ_T0023068.1 MGP_CASTEiJ_G0016193.1 mouse_genomes_project 1 181831045 181852983 - Adss protein_coding retained_intron MGP_CASTEiJ_T0020773.1 MGP_CASTEiJ_G0015697.1 mouse_genomes_project 1 94283243 94309803 + MGP_CASTEiJ_P0020773 Atg4b protein_coding protein_coding MGP_CASTEiJ_T0020774.1 MGP_CASTEiJ_G0015697.1 mouse_genomes_project 1 94286658 94322891 + MGP_CASTEiJ_P0020774 Atg4b protein_coding protein_coding MGP_CASTEiJ_T0020775.1 MGP_CASTEiJ_G0015697.1 mouse_genomes_project 1 94286741 94312532 + MGP_CASTEiJ_P0020775 Atg4b protein_coding protein_coding MGP_CASTEiJ_T0020776.1 MGP_CASTEiJ_G0015697.1 mouse_genomes_project 1 94286788 94317215 + MGP_CASTEiJ_P0020776 Atg4b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020777.1 MGP_CASTEiJ_G0015697.1 mouse_genomes_project 1 94286798 94320463 + Atg4b protein_coding retained_intron MGP_CASTEiJ_T0020778.1 MGP_CASTEiJ_G0015697.1 mouse_genomes_project 1 94286915 94301411 + Atg4b protein_coding processed_transcript MGP_CASTEiJ_T0020779.1 MGP_CASTEiJ_G0015697.1 mouse_genomes_project 1 94301387 94309570 + Atg4b protein_coding retained_intron MGP_CASTEiJ_T0020780.1 MGP_CASTEiJ_G0015697.1 mouse_genomes_project 1 94316634 94317368 + Atg4b protein_coding retained_intron MGP_CASTEiJ_T0020781.1 MGP_CASTEiJ_G0015697.1 mouse_genomes_project 1 94317088 94320161 + MGP_CASTEiJ_P0020781 Atg4b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020782.1 MGP_CASTEiJ_G0015697.1 mouse_genomes_project 1 94317870 94318864 + Atg4b protein_coding retained_intron MGP_CASTEiJ_T0020783.1 MGP_CASTEiJ_G0015697.1 mouse_genomes_project 1 94318502 94320183 + Atg4b protein_coding retained_intron MGP_CASTEiJ_T0020055.1 MGP_CASTEiJ_G0015546.1 mouse_genomes_project 1 75162937 75178636 + MGP_CASTEiJ_P0020055 Stk11ip protein_coding protein_coding MGP_CASTEiJ_T0020056.1 MGP_CASTEiJ_G0015546.1 mouse_genomes_project 1 75162960 75178241 + MGP_CASTEiJ_P0020056 Stk11ip protein_coding protein_coding MGP_CASTEiJ_T0020057.1 MGP_CASTEiJ_G0015546.1 mouse_genomes_project 1 75163199 75178244 + Stk11ip protein_coding retained_intron MGP_CASTEiJ_T0020058.1 MGP_CASTEiJ_G0015546.1 mouse_genomes_project 1 75163219 75168481 + Stk11ip protein_coding retained_intron MGP_CASTEiJ_T0020059.1 MGP_CASTEiJ_G0015546.1 mouse_genomes_project 1 75169658 75170837 + Stk11ip protein_coding retained_intron MGP_CASTEiJ_T0020060.1 MGP_CASTEiJ_G0015546.1 mouse_genomes_project 1 75169993 75178244 + Stk11ip protein_coding retained_intron MGP_CASTEiJ_T0020061.1 MGP_CASTEiJ_G0015546.1 mouse_genomes_project 1 75171027 75173701 + Stk11ip protein_coding retained_intron MGP_CASTEiJ_T0020062.1 MGP_CASTEiJ_G0015546.1 mouse_genomes_project 1 75173894 75175549 + Stk11ip protein_coding retained_intron MGP_CASTEiJ_T0020063.1 MGP_CASTEiJ_G0015546.1 mouse_genomes_project 1 75174362 75175080 + Stk11ip protein_coding processed_transcript MGP_CASTEiJ_T0100280.1 MGP_CASTEiJ_G0037193.1 mouse_genomes_project 1 62139007 62139127 + Gm24942 snoRNA snoRNA MGP_CASTEiJ_T0023415.1 MGP_CASTEiJ_G0016267.1 mouse_genomes_project 1 191935452 191956498 + Gpatch2 protein_coding processed_transcript MGP_CASTEiJ_T0023416.1 MGP_CASTEiJ_G0016267.1 mouse_genomes_project 1 191935455 192078789 + MGP_CASTEiJ_P0023416 Gpatch2 protein_coding protein_coding MGP_CASTEiJ_T0023417.1 MGP_CASTEiJ_G0016267.1 mouse_genomes_project 1 191935455 192077002 + MGP_CASTEiJ_P0023417 Gpatch2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023418.1 MGP_CASTEiJ_G0016267.1 mouse_genomes_project 1 191935466 192079053 + MGP_CASTEiJ_P0023418 Gpatch2 protein_coding protein_coding MGP_CASTEiJ_T0023419.1 MGP_CASTEiJ_G0016267.1 mouse_genomes_project 1 191935482 192030527 + Gpatch2 protein_coding retained_intron MGP_CASTEiJ_T0023420.1 MGP_CASTEiJ_G0016267.1 mouse_genomes_project 1 191935488 191955085 + MGP_CASTEiJ_P0023420 Gpatch2 protein_coding protein_coding MGP_CASTEiJ_T0023421.1 MGP_CASTEiJ_G0016267.1 mouse_genomes_project 1 191935490 191954568 + MGP_CASTEiJ_P0023421 Gpatch2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023422.1 MGP_CASTEiJ_G0016267.1 mouse_genomes_project 1 191935687 192078085 + MGP_CASTEiJ_P0023422 Gpatch2 protein_coding protein_coding MGP_CASTEiJ_T0023423.1 MGP_CASTEiJ_G0016267.1 mouse_genomes_project 1 191945881 192078789 + MGP_CASTEiJ_P0023423 Gpatch2 protein_coding protein_coding MGP_CASTEiJ_T0000393.1 MGP_CASTEiJ_G0000340.1 mouse_genomes_project 1 28777739 28780774 - TEC TEC MGP_CASTEiJ_T0000700.1 MGP_CASTEiJ_G0000644.1 mouse_genomes_project 1 172084676 172085285 - TEC TEC MGP_CASTEiJ_T0000516.1 MGP_CASTEiJ_G0000462.1 mouse_genomes_project 1 86825982 86828766 + TEC TEC MGP_CASTEiJ_T0009278.1 MGP_CASTEiJ_G0007466.1 mouse_genomes_project 1 96893186 96893637 + miRNA miRNA MGP_CASTEiJ_T0011622.1 MGP_CASTEiJ_G0009785.1 mouse_genomes_project 1 22962817 22963261 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023582.1 MGP_CASTEiJ_G0016298.1 mouse_genomes_project 1 197484970 197755567 - MGP_CASTEiJ_P0023582 Hhat protein_coding protein_coding MGP_CASTEiJ_T0023583.1 MGP_CASTEiJ_G0016298.1 mouse_genomes_project 1 197501165 197755577 - MGP_CASTEiJ_P0023583 Hhat protein_coding protein_coding MGP_CASTEiJ_T0023584.1 MGP_CASTEiJ_G0016298.1 mouse_genomes_project 1 197531540 197755572 - MGP_CASTEiJ_P0023584 Hhat protein_coding non_stop_decay MGP_CASTEiJ_T0023585.1 MGP_CASTEiJ_G0016298.1 mouse_genomes_project 1 197639154 197674908 - Hhat protein_coding processed_transcript MGP_CASTEiJ_T0023586.1 MGP_CASTEiJ_G0016298.1 mouse_genomes_project 1 197714888 197725770 - Hhat protein_coding processed_transcript MGP_CASTEiJ_T0023587.1 MGP_CASTEiJ_G0016298.1 mouse_genomes_project 1 197724900 197755346 - Hhat protein_coding processed_transcript MGP_CASTEiJ_T0009294.1 MGP_CASTEiJ_G0007482.1 mouse_genomes_project 1 156697620 156697731 + Mir8114 miRNA miRNA MGP_CASTEiJ_T0098433.1 MGP_CASTEiJ_G0035364.1 mouse_genomes_project 1 119359803 119359920 - Gm22094 rRNA rRNA MGP_CASTEiJ_T0011546.1 MGP_CASTEiJ_G0009709.1 mouse_genomes_project 1 722766 723692 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000325.1 MGP_CASTEiJ_G0000274.1 mouse_genomes_project 1 2166480 2167592 - TEC TEC MGP_CASTEiJ_T0022307.1 MGP_CASTEiJ_G0016003.1 mouse_genomes_project 1 165186520 165190799 + MGP_CASTEiJ_P0022307 Pigc protein_coding protein_coding MGP_CASTEiJ_T0022308.1 MGP_CASTEiJ_G0016003.1 mouse_genomes_project 1 165186522 165189692 + MGP_CASTEiJ_P0022308 Pigc protein_coding protein_coding MGP_CASTEiJ_T0022309.1 MGP_CASTEiJ_G0016003.1 mouse_genomes_project 1 165186562 165190798 + MGP_CASTEiJ_P0022309 Pigc protein_coding protein_coding MGP_CASTEiJ_T0022310.1 MGP_CASTEiJ_G0016003.1 mouse_genomes_project 1 165186633 165188236 + MGP_CASTEiJ_P0022310 Pigc protein_coding protein_coding MGP_CASTEiJ_T0022311.1 MGP_CASTEiJ_G0016003.1 mouse_genomes_project 1 165186636 165187895 + MGP_CASTEiJ_P0022311 Pigc protein_coding protein_coding MGP_CASTEiJ_T0098781.1 MGP_CASTEiJ_G0035712.1 mouse_genomes_project 1 36307331 36308342 - Gm37062 sense_intronic sense_intronic MGP_CASTEiJ_T0005536.1 MGP_CASTEiJ_G0004670.1 mouse_genomes_project 1 34269029 34275657 + Gm33280 lincRNA lincRNA MGP_CASTEiJ_T0020378.1 MGP_CASTEiJ_G0015613.1 mouse_genomes_project 1 87281963 87337752 + MGP_CASTEiJ_P0020378 Efhd1 protein_coding protein_coding MGP_CASTEiJ_T0020379.1 MGP_CASTEiJ_G0015613.1 mouse_genomes_project 1 87281963 87337749 + MGP_CASTEiJ_P0020379 Efhd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020380.1 MGP_CASTEiJ_G0015613.1 mouse_genomes_project 1 87336134 87336652 + Efhd1 protein_coding processed_transcript MGP_CASTEiJ_T0005761.1 MGP_CASTEiJ_G0004843.1 mouse_genomes_project 1 138464114 138500784 + Platr22 lincRNA lincRNA MGP_CASTEiJ_T0011585.1 MGP_CASTEiJ_G0009748.1 mouse_genomes_project 1 8050545 8051051 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018764.1 MGP_CASTEiJ_G0015307.1 mouse_genomes_project 1 37486554 37583237 + MGP_CASTEiJ_P0018764 Npas2 protein_coding protein_coding MGP_CASTEiJ_T0018765.1 MGP_CASTEiJ_G0015307.1 mouse_genomes_project 1 37487035 37669462 + MGP_CASTEiJ_P0018765 Npas2 protein_coding protein_coding MGP_CASTEiJ_T0018766.1 MGP_CASTEiJ_G0015307.1 mouse_genomes_project 1 37646178 37651981 + Npas2 protein_coding processed_transcript MGP_CASTEiJ_T0022003.1 MGP_CASTEiJ_G0015954.1 mouse_genomes_project 1 157195132 157491611 - MGP_CASTEiJ_P0022003 Cacna1e protein_coding unknown_likely_coding MGP_CASTEiJ_T0022004.1 MGP_CASTEiJ_G0015954.1 mouse_genomes_project 1 157217713 157558856 - MGP_CASTEiJ_P0022004 Cacna1e protein_coding protein_coding MGP_CASTEiJ_T0022005.1 MGP_CASTEiJ_G0015954.1 mouse_genomes_project 1 157219501 157558423 - MGP_CASTEiJ_P0022005 Cacna1e protein_coding protein_coding MGP_CASTEiJ_T0022006.1 MGP_CASTEiJ_G0015954.1 mouse_genomes_project 1 157221677 157558422 - MGP_CASTEiJ_P0022006 Cacna1e protein_coding unknown_likely_coding MGP_CASTEiJ_T0022007.1 MGP_CASTEiJ_G0015954.1 mouse_genomes_project 1 157299574 157307176 - Cacna1e protein_coding retained_intron MGP_CASTEiJ_T0022008.1 MGP_CASTEiJ_G0015954.1 mouse_genomes_project 1 157311555 157652852 - Cacna1e protein_coding retained_intron MGP_CASTEiJ_T0022009.1 MGP_CASTEiJ_G0015954.1 mouse_genomes_project 1 157531645 157724555 - Cacna1e protein_coding retained_intron MGP_CASTEiJ_T0022010.1 MGP_CASTEiJ_G0015954.1 mouse_genomes_project 1 157722217 157724078 - Cacna1e protein_coding retained_intron MGP_CASTEiJ_T0002690.1 MGP_CASTEiJ_G0002566.1 mouse_genomes_project 1 38445910 38457179 - Gm16894 antisense antisense MGP_CASTEiJ_T0002661.1 MGP_CASTEiJ_G0002543.1 mouse_genomes_project 1 14481304 14535451 + antisense antisense MGP_CASTEiJ_T0002844.1 MGP_CASTEiJ_G0002683.1 mouse_genomes_project 1 173678824 173680388 + 4930500M09Rik antisense antisense MGP_CASTEiJ_T0002845.1 MGP_CASTEiJ_G0002683.1 mouse_genomes_project 1 173678824 173679521 + 4930500M09Rik antisense antisense MGP_CASTEiJ_T0011605.1 MGP_CASTEiJ_G0009768.1 mouse_genomes_project 1 16590858 16590970 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000358.1 MGP_CASTEiJ_G0000307.1 mouse_genomes_project 1 13652499 13654750 - TEC TEC MGP_CASTEiJ_T0011930.1 MGP_CASTEiJ_G0010093.1 mouse_genomes_project 1 150500091 150500537 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000361.1 MGP_CASTEiJ_G0000310.1 mouse_genomes_project 1 17178569 17181348 + TEC TEC MGP_CASTEiJ_T0019742.1 MGP_CASTEiJ_G0015498.1 mouse_genomes_project 1 73898104 73905222 - MGP_CASTEiJ_P0019742 Aamp protein_coding protein_coding MGP_CASTEiJ_T0019743.1 MGP_CASTEiJ_G0015498.1 mouse_genomes_project 1 73898110 73904499 - Aamp protein_coding retained_intron MGP_CASTEiJ_T0019744.1 MGP_CASTEiJ_G0015498.1 mouse_genomes_project 1 73898110 73905164 - MGP_CASTEiJ_P0019744 Aamp protein_coding protein_coding MGP_CASTEiJ_T0019745.1 MGP_CASTEiJ_G0015498.1 mouse_genomes_project 1 73899197 73904462 - MGP_CASTEiJ_P0019745 Aamp protein_coding protein_coding MGP_CASTEiJ_T0019746.1 MGP_CASTEiJ_G0015498.1 mouse_genomes_project 1 73899324 73901402 - Aamp protein_coding retained_intron MGP_CASTEiJ_T0019747.1 MGP_CASTEiJ_G0015498.1 mouse_genomes_project 1 73901455 73904905 - MGP_CASTEiJ_P0019747 Aamp protein_coding protein_coding MGP_CASTEiJ_T0018012.1 MGP_CASTEiJ_G0015164.1 mouse_genomes_project 1 2058741 2146828 + MGP_CASTEiJ_P0018012 Gm37988 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021916.1 MGP_CASTEiJ_G0015934.1 mouse_genomes_project 1 155204573 155474601 - MGP_CASTEiJ_P0021916 Rgl1 protein_coding protein_coding MGP_CASTEiJ_T0021917.1 MGP_CASTEiJ_G0015934.1 mouse_genomes_project 1 155204764 155318996 - MGP_CASTEiJ_P0021917 Rgl1 protein_coding protein_coding MGP_CASTEiJ_T0021918.1 MGP_CASTEiJ_G0015934.1 mouse_genomes_project 1 155206570 155474647 - MGP_CASTEiJ_P0021918 Rgl1 protein_coding protein_coding MGP_CASTEiJ_T0021919.1 MGP_CASTEiJ_G0015934.1 mouse_genomes_project 1 155243190 155244727 - Rgl1 protein_coding retained_intron MGP_CASTEiJ_T0021920.1 MGP_CASTEiJ_G0015934.1 mouse_genomes_project 1 155249374 155286264 - Rgl1 protein_coding processed_transcript MGP_CASTEiJ_T0021921.1 MGP_CASTEiJ_G0015934.1 mouse_genomes_project 1 155249374 155318808 - MGP_CASTEiJ_P0021921 Rgl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019567.1 MGP_CASTEiJ_G0015463.1 mouse_genomes_project 1 64492269 64561732 + MGP_CASTEiJ_P0019567 Pth2r protein_coding protein_coding MGP_CASTEiJ_T0019568.1 MGP_CASTEiJ_G0015463.1 mouse_genomes_project 1 64524620 64607508 + MGP_CASTEiJ_P0019568 Pth2r protein_coding protein_coding MGP_CASTEiJ_T0000476.1 MGP_CASTEiJ_G0000422.1 mouse_genomes_project 1 68059053 68062313 - TEC TEC MGP_CASTEiJ_T0020826.1 MGP_CASTEiJ_G0015710.1 mouse_genomes_project 1 98276940 98327966 - MGP_CASTEiJ_P0020826 Pam protein_coding protein_coding MGP_CASTEiJ_T0020827.1 MGP_CASTEiJ_G0015710.1 mouse_genomes_project 1 98305876 98587086 - MGP_CASTEiJ_P0020827 Pam protein_coding protein_coding MGP_CASTEiJ_T0020828.1 MGP_CASTEiJ_G0015710.1 mouse_genomes_project 1 98305877 98587097 - MGP_CASTEiJ_P0020828 Pam protein_coding protein_coding MGP_CASTEiJ_T0020829.1 MGP_CASTEiJ_G0015710.1 mouse_genomes_project 1 98305882 98461130 - MGP_CASTEiJ_P0020829 Pam protein_coding protein_coding MGP_CASTEiJ_T0020830.1 MGP_CASTEiJ_G0015710.1 mouse_genomes_project 1 98306497 98327544 - MGP_CASTEiJ_P0020830 Pam protein_coding protein_coding MGP_CASTEiJ_T0020831.1 MGP_CASTEiJ_G0015710.1 mouse_genomes_project 1 98306757 98320309 - Pam protein_coding retained_intron MGP_CASTEiJ_T0020832.1 MGP_CASTEiJ_G0015710.1 mouse_genomes_project 1 98308474 98311669 - Pam protein_coding processed_transcript MGP_CASTEiJ_T0020833.1 MGP_CASTEiJ_G0015710.1 mouse_genomes_project 1 98311342 98328036 - Pam protein_coding retained_intron MGP_CASTEiJ_T0020834.1 MGP_CASTEiJ_G0015710.1 mouse_genomes_project 1 98323358 98327546 - Pam protein_coding retained_intron MGP_CASTEiJ_T0020835.1 MGP_CASTEiJ_G0015710.1 mouse_genomes_project 1 98339984 98351478 - Pam protein_coding retained_intron MGP_CASTEiJ_T0020836.1 MGP_CASTEiJ_G0015710.1 mouse_genomes_project 1 98341687 98374859 - MGP_CASTEiJ_P0020836 Pam protein_coding protein_coding MGP_CASTEiJ_T0020837.1 MGP_CASTEiJ_G0015710.1 mouse_genomes_project 1 98415764 98460943 - Pam protein_coding retained_intron MGP_CASTEiJ_T0020838.1 MGP_CASTEiJ_G0015710.1 mouse_genomes_project 1 98441353 98461119 - Pam protein_coding processed_transcript MGP_CASTEiJ_T0020839.1 MGP_CASTEiJ_G0015710.1 mouse_genomes_project 1 98543169 98547060 - Pam protein_coding retained_intron MGP_CASTEiJ_T0020840.1 MGP_CASTEiJ_G0015710.1 mouse_genomes_project 1 98547149 98587111 - Pam protein_coding processed_transcript MGP_CASTEiJ_T0005757.1 MGP_CASTEiJ_G0004842.1 mouse_genomes_project 1 138430960 138457123 + Gm19705 lincRNA lincRNA MGP_CASTEiJ_T0005758.1 MGP_CASTEiJ_G0004842.1 mouse_genomes_project 1 138436686 138444596 + Gm19705 lincRNA lincRNA MGP_CASTEiJ_T0005759.1 MGP_CASTEiJ_G0004842.1 mouse_genomes_project 1 138445250 138458975 + Gm19705 lincRNA lincRNA MGP_CASTEiJ_T0005760.1 MGP_CASTEiJ_G0004842.1 mouse_genomes_project 1 138445482 138458973 + Gm19705 lincRNA lincRNA MGP_CASTEiJ_T0009309.1 MGP_CASTEiJ_G0007497.1 mouse_genomes_project 1 177324395 177324485 + Gm44481 miRNA miRNA MGP_CASTEiJ_T0002793.1 MGP_CASTEiJ_G0002641.1 mouse_genomes_project 1 136449678 136461965 + Gm28892 antisense antisense MGP_CASTEiJ_T0005616.1 MGP_CASTEiJ_G0004727.1 mouse_genomes_project 1 68853627 68857057 - Gm29113 lincRNA lincRNA MGP_CASTEiJ_T0020756.1 MGP_CASTEiJ_G0015694.1 mouse_genomes_project 1 94139939 94157288 - MGP_CASTEiJ_P0020756 Stk25 protein_coding protein_coding MGP_CASTEiJ_T0020757.1 MGP_CASTEiJ_G0015694.1 mouse_genomes_project 1 94142082 94157195 - Stk25 protein_coding retained_intron MGP_CASTEiJ_T0020758.1 MGP_CASTEiJ_G0015694.1 mouse_genomes_project 1 94142535 94145539 - Stk25 protein_coding retained_intron MGP_CASTEiJ_T0020759.1 MGP_CASTEiJ_G0015694.1 mouse_genomes_project 1 94143573 94145966 - Stk25 protein_coding retained_intron MGP_CASTEiJ_T0020760.1 MGP_CASTEiJ_G0015694.1 mouse_genomes_project 1 94146027 94157045 - MGP_CASTEiJ_P0020760 Stk25 protein_coding protein_coding MGP_CASTEiJ_T0020761.1 MGP_CASTEiJ_G0015694.1 mouse_genomes_project 1 94147385 94185691 - MGP_CASTEiJ_P0020761 Stk25 protein_coding protein_coding MGP_CASTEiJ_T0000424.1 MGP_CASTEiJ_G0000370.1 mouse_genomes_project 1 38944421 38948360 - TEC TEC MGP_CASTEiJ_T0018775.1 MGP_CASTEiJ_G0015310.1 mouse_genomes_project 1 37852300 37866066 + MGP_CASTEiJ_P0018775 Cnot11 protein_coding protein_coding MGP_CASTEiJ_T0018776.1 MGP_CASTEiJ_G0015310.1 mouse_genomes_project 1 37853109 37866050 + MGP_CASTEiJ_P0018776 Cnot11 protein_coding protein_coding MGP_CASTEiJ_T0018777.1 MGP_CASTEiJ_G0015310.1 mouse_genomes_project 1 37855527 37865262 + Cnot11 protein_coding retained_intron MGP_CASTEiJ_T0018778.1 MGP_CASTEiJ_G0015310.1 mouse_genomes_project 1 37857314 37864181 + MGP_CASTEiJ_P0018778 Cnot11 protein_coding protein_coding MGP_CASTEiJ_T0011916.1 MGP_CASTEiJ_G0010079.1 mouse_genomes_project 1 140877594 140879263 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019098.1 MGP_CASTEiJ_G0015375.1 mouse_genomes_project 1 52510274 52926969 - MGP_CASTEiJ_P0019098 Hecw2 protein_coding protein_coding MGP_CASTEiJ_T0019099.1 MGP_CASTEiJ_G0015375.1 mouse_genomes_project 1 52510280 52927949 - MGP_CASTEiJ_P0019099 Hecw2 protein_coding protein_coding MGP_CASTEiJ_T0019100.1 MGP_CASTEiJ_G0015375.1 mouse_genomes_project 1 52516618 52750602 - MGP_CASTEiJ_P0019100 Hecw2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0019101.1 MGP_CASTEiJ_G0015375.1 mouse_genomes_project 1 52537187 52544544 - Hecw2 protein_coding processed_transcript MGP_CASTEiJ_T0019102.1 MGP_CASTEiJ_G0015375.1 mouse_genomes_project 1 52542386 52570653 - Hecw2 protein_coding processed_transcript MGP_CASTEiJ_T0019103.1 MGP_CASTEiJ_G0015375.1 mouse_genomes_project 1 52640149 52927949 - MGP_CASTEiJ_P0019103 Hecw2 protein_coding protein_coding MGP_CASTEiJ_T0019104.1 MGP_CASTEiJ_G0015375.1 mouse_genomes_project 1 52652455 52928083 - Hecw2 protein_coding retained_intron MGP_CASTEiJ_T0005538.1 MGP_CASTEiJ_G0004672.1 mouse_genomes_project 1 34918233 34923540 - Gm33533 lincRNA lincRNA MGP_CASTEiJ_T0022882.1 MGP_CASTEiJ_G0016129.1 mouse_genomes_project 1 175994126 176002899 - MGP_CASTEiJ_P0022882 Kcnj9 protein_coding protein_coding MGP_CASTEiJ_T0022883.1 MGP_CASTEiJ_G0016129.1 mouse_genomes_project 1 175995713 176002863 - MGP_CASTEiJ_P0022883 Kcnj9 protein_coding protein_coding MGP_CASTEiJ_T0022884.1 MGP_CASTEiJ_G0016129.1 mouse_genomes_project 1 175998931 176001686 - Kcnj9 protein_coding retained_intron MGP_CASTEiJ_T0000664.1 MGP_CASTEiJ_G0000608.1 mouse_genomes_project 1 160326301 160328708 - TEC TEC MGP_CASTEiJ_T0011853.1 MGP_CASTEiJ_G0010016.1 mouse_genomes_project 1 111305465 111306003 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021276.1 MGP_CASTEiJ_G0015807.1 mouse_genomes_project 1 133142839 133170335 + MGP_CASTEiJ_P0021276 Slc26a9 protein_coding protein_coding MGP_CASTEiJ_T0021277.1 MGP_CASTEiJ_G0015807.1 mouse_genomes_project 1 133142855 133162763 + MGP_CASTEiJ_P0021277 Slc26a9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021278.1 MGP_CASTEiJ_G0015807.1 mouse_genomes_project 1 133149233 133149938 + Slc26a9 protein_coding retained_intron MGP_CASTEiJ_T0021279.1 MGP_CASTEiJ_G0015807.1 mouse_genomes_project 1 133149341 133152904 + MGP_CASTEiJ_P0021279 Slc26a9 protein_coding protein_coding MGP_CASTEiJ_T0098783.1 MGP_CASTEiJ_G0035714.1 mouse_genomes_project 1 50551235 50552512 - Gm29453 sense_intronic sense_intronic MGP_CASTEiJ_T0002768.1 MGP_CASTEiJ_G0002624.1 mouse_genomes_project 1 119173762 119174371 - 2900060B14Rik antisense antisense MGP_CASTEiJ_T0002769.1 MGP_CASTEiJ_G0002624.1 mouse_genomes_project 1 119173773 119173851 - 2900060B14Rik antisense antisense MGP_CASTEiJ_T0018204.1 MGP_CASTEiJ_G0015191.1 mouse_genomes_project 1 10240445 10374683 - MGP_CASTEiJ_P0018204 Slco5a1 protein_coding protein_coding MGP_CASTEiJ_T0018205.1 MGP_CASTEiJ_G0015191.1 mouse_genomes_project 1 10245254 10373293 - MGP_CASTEiJ_P0018205 Slco5a1 protein_coding protein_coding MGP_CASTEiJ_T0018206.1 MGP_CASTEiJ_G0015191.1 mouse_genomes_project 1 10255369 10303687 - Slco5a1 protein_coding processed_transcript MGP_CASTEiJ_T0018207.1 MGP_CASTEiJ_G0015191.1 mouse_genomes_project 1 10357903 10373293 - Slco5a1 protein_coding processed_transcript MGP_CASTEiJ_T0100259.1 MGP_CASTEiJ_G0037172.1 mouse_genomes_project 1 20961839 20961960 + Gm24176 snoRNA snoRNA MGP_CASTEiJ_T0023031.1 MGP_CASTEiJ_G0016187.1 mouse_genomes_project 1 179950831 179951899 - MGP_CASTEiJ_P0023031 Rbm8a2 protein_coding protein_coding MGP_CASTEiJ_T0011712.1 MGP_CASTEiJ_G0009875.1 mouse_genomes_project 1 51612621 51613481 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002686.1 MGP_CASTEiJ_G0002563.1 mouse_genomes_project 1 36634705 36644997 + Gm16152 antisense antisense MGP_CASTEiJ_T0002687.1 MGP_CASTEiJ_G0002563.1 mouse_genomes_project 1 36638239 36641267 + Gm16152 antisense antisense MGP_CASTEiJ_T0020474.1 MGP_CASTEiJ_G0015630.1 mouse_genomes_project 1 88223434 88335523 + protein_coding retained_intron MGP_CASTEiJ_T0020475.1 MGP_CASTEiJ_G0015630.1 mouse_genomes_project 1 88223434 88339172 + MGP_CASTEiJ_P0020475 protein_coding protein_coding MGP_CASTEiJ_T0020476.1 MGP_CASTEiJ_G0015630.1 mouse_genomes_project 1 88223609 88334465 + MGP_CASTEiJ_P0020476 protein_coding protein_coding MGP_CASTEiJ_T0020477.1 MGP_CASTEiJ_G0015630.1 mouse_genomes_project 1 88227450 88339172 + MGP_CASTEiJ_P0020477 protein_coding protein_coding MGP_CASTEiJ_T0005744.1 MGP_CASTEiJ_G0004829.1 mouse_genomes_project 1 133778011 133785836 + F730311O21Rik lincRNA lincRNA MGP_CASTEiJ_T0018815.1 MGP_CASTEiJ_G0015319.1 mouse_genomes_project 1 38799023 38816075 + MGP_CASTEiJ_P0018815 Il1rl1 protein_coding protein_coding MGP_CASTEiJ_T0018816.1 MGP_CASTEiJ_G0015319.1 mouse_genomes_project 1 38805905 38810760 + MGP_CASTEiJ_P0018816 Il1rl1 protein_coding protein_coding MGP_CASTEiJ_T0018817.1 MGP_CASTEiJ_G0015319.1 mouse_genomes_project 1 38808976 38828405 + MGP_CASTEiJ_P0018817 Il1rl1 protein_coding protein_coding MGP_CASTEiJ_T0018818.1 MGP_CASTEiJ_G0015319.1 mouse_genomes_project 1 38809980 38828388 + MGP_CASTEiJ_P0018818 Il1rl1 protein_coding protein_coding MGP_CASTEiJ_T0002859.1 MGP_CASTEiJ_G0002695.1 mouse_genomes_project 1 182472160 182477371 - B230369F24Rik antisense antisense MGP_CASTEiJ_T0011898.1 MGP_CASTEiJ_G0010061.1 mouse_genomes_project 1 129338327 129338807 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002727.1 MGP_CASTEiJ_G0002593.1 mouse_genomes_project 1 72558503 72595958 + 1700027A15Rik antisense antisense MGP_CASTEiJ_T0002728.1 MGP_CASTEiJ_G0002593.1 mouse_genomes_project 1 72586286 72596741 + 1700027A15Rik antisense antisense MGP_CASTEiJ_T0002729.1 MGP_CASTEiJ_G0002593.1 mouse_genomes_project 1 72586631 72596732 + 1700027A15Rik antisense antisense MGP_CASTEiJ_T0002730.1 MGP_CASTEiJ_G0002593.1 mouse_genomes_project 1 72593812 72596733 + 1700027A15Rik antisense antisense MGP_CASTEiJ_T0002731.1 MGP_CASTEiJ_G0002593.1 mouse_genomes_project 1 72595802 72596741 + 1700027A15Rik antisense antisense MGP_CASTEiJ_T0002869.1 MGP_CASTEiJ_G0002703.1 mouse_genomes_project 1 189485580 189506424 + Gm38251 antisense antisense MGP_CASTEiJ_T0005704.1 MGP_CASTEiJ_G0004798.1 mouse_genomes_project 1 108403527 108409832 + Gm15389 lincRNA lincRNA MGP_CASTEiJ_T0018812.1 MGP_CASTEiJ_G0015318.1 mouse_genomes_project 1 38686001 38690877 + protein_coding retained_intron MGP_CASTEiJ_T0018813.1 MGP_CASTEiJ_G0015318.1 mouse_genomes_project 1 38687010 38690610 + MGP_CASTEiJ_P0018813 protein_coding protein_coding MGP_CASTEiJ_T0018814.1 MGP_CASTEiJ_G0015318.1 mouse_genomes_project 1 38687289 38729345 + MGP_CASTEiJ_P0018814 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022424.1 MGP_CASTEiJ_G0016028.1 mouse_genomes_project 1 167552669 167564937 + MGP_CASTEiJ_P0022424 Ccdc181 protein_coding protein_coding MGP_CASTEiJ_T0011947.1 MGP_CASTEiJ_G0010110.1 mouse_genomes_project 1 155517112 155546237 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020533.1 MGP_CASTEiJ_G0015648.1 mouse_genomes_project 1 91303920 91341841 + MGP_CASTEiJ_P0020533 Mlph protein_coding protein_coding MGP_CASTEiJ_T0020534.1 MGP_CASTEiJ_G0015648.1 mouse_genomes_project 1 91316481 91317239 + MGP_CASTEiJ_P0020534 Mlph protein_coding protein_coding MGP_CASTEiJ_T0020535.1 MGP_CASTEiJ_G0015648.1 mouse_genomes_project 1 91328113 91329184 + Mlph protein_coding retained_intron MGP_CASTEiJ_T0019149.1 MGP_CASTEiJ_G0015384.1 mouse_genomes_project 1 53903205 53925791 + MGP_CASTEiJ_P0019149 Mob4 protein_coding protein_coding MGP_CASTEiJ_T0019150.1 MGP_CASTEiJ_G0015384.1 mouse_genomes_project 1 53903205 53926732 + MGP_CASTEiJ_P0019150 Mob4 protein_coding protein_coding MGP_CASTEiJ_T0019151.1 MGP_CASTEiJ_G0015384.1 mouse_genomes_project 1 53903234 53926731 + Mob4 protein_coding retained_intron MGP_CASTEiJ_T0019152.1 MGP_CASTEiJ_G0015384.1 mouse_genomes_project 1 53903256 53924855 + MGP_CASTEiJ_P0019152 Mob4 protein_coding protein_coding MGP_CASTEiJ_T0019153.1 MGP_CASTEiJ_G0015384.1 mouse_genomes_project 1 53903261 53925215 + MGP_CASTEiJ_P0019153 Mob4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019154.1 MGP_CASTEiJ_G0015384.1 mouse_genomes_project 1 53903294 53924639 + MGP_CASTEiJ_P0019154 Mob4 protein_coding protein_coding MGP_CASTEiJ_T0019155.1 MGP_CASTEiJ_G0015384.1 mouse_genomes_project 1 53903300 53917074 + Mob4 protein_coding retained_intron MGP_CASTEiJ_T0019156.1 MGP_CASTEiJ_G0015384.1 mouse_genomes_project 1 53919461 53920348 + Mob4 protein_coding retained_intron MGP_CASTEiJ_T0021397.1 MGP_CASTEiJ_G0015830.1 mouse_genomes_project 1 134748324 134807810 + MGP_CASTEiJ_P0021397 Plekha6 protein_coding protein_coding MGP_CASTEiJ_T0021398.1 MGP_CASTEiJ_G0015830.1 mouse_genomes_project 1 134760197 134803411 + MGP_CASTEiJ_P0021398 Plekha6 protein_coding protein_coding MGP_CASTEiJ_T0021399.1 MGP_CASTEiJ_G0015830.1 mouse_genomes_project 1 134762192 134805590 + MGP_CASTEiJ_P0021399 Plekha6 protein_coding protein_coding MGP_CASTEiJ_T0021400.1 MGP_CASTEiJ_G0015830.1 mouse_genomes_project 1 134772652 134775516 + Plekha6 protein_coding processed_transcript MGP_CASTEiJ_T0021401.1 MGP_CASTEiJ_G0015830.1 mouse_genomes_project 1 134777423 134784986 + MGP_CASTEiJ_P0021401 Plekha6 protein_coding protein_coding MGP_CASTEiJ_T0021402.1 MGP_CASTEiJ_G0015830.1 mouse_genomes_project 1 134777429 134788133 + MGP_CASTEiJ_P0021402 Plekha6 protein_coding protein_coding MGP_CASTEiJ_T0021403.1 MGP_CASTEiJ_G0015830.1 mouse_genomes_project 1 134796155 134798618 + Plekha6 protein_coding retained_intron MGP_CASTEiJ_T0021404.1 MGP_CASTEiJ_G0015830.1 mouse_genomes_project 1 134802324 134805991 + Plekha6 protein_coding retained_intron MGP_CASTEiJ_T0000587.1 MGP_CASTEiJ_G0000533.1 mouse_genomes_project 1 131287395 131290266 + TEC TEC MGP_CASTEiJ_T0005741.1 MGP_CASTEiJ_G0004826.1 mouse_genomes_project 1 133460315 133492553 + Gm26892 lincRNA lincRNA MGP_CASTEiJ_T0005888.1 MGP_CASTEiJ_G0004942.1 mouse_genomes_project 1 195527104 195537301 + Gm30932 lincRNA lincRNA MGP_CASTEiJ_T0099081.1 MGP_CASTEiJ_G0035994.1 mouse_genomes_project 1 33880249 33880354 + Gm25634 snRNA snRNA MGP_CASTEiJ_T0022002.1 MGP_CASTEiJ_G0015953.1 mouse_genomes_project 1 157023994 157028486 + MGP_CASTEiJ_P0022002 Zfp648 protein_coding protein_coding MGP_CASTEiJ_T0009305.1 MGP_CASTEiJ_G0007493.1 mouse_genomes_project 1 171911772 171911892 + Mir6348 miRNA miRNA MGP_CASTEiJ_T0098424.1 MGP_CASTEiJ_G0035355.1 mouse_genomes_project 1 35183969 35184088 + n-R5s210 rRNA rRNA MGP_CASTEiJ_T0002884.1 MGP_CASTEiJ_G0002717.1 mouse_genomes_project 1 195071468 195124390 + Prox1os antisense antisense MGP_CASTEiJ_T0018964.1 MGP_CASTEiJ_G0015350.1 mouse_genomes_project 1 44719305 45118834 + protein_coding processed_transcript MGP_CASTEiJ_T0000690.1 MGP_CASTEiJ_G0000634.1 mouse_genomes_project 1 167710674 167713772 + TEC TEC MGP_CASTEiJ_T0100292.1 MGP_CASTEiJ_G0037205.1 mouse_genomes_project 1 86310562 86310632 - Snord82 snoRNA snoRNA MGP_CASTEiJ_T0019748.1 MGP_CASTEiJ_G0015499.1 mouse_genomes_project 1 73905413 73909934 + MGP_CASTEiJ_P0019748 Pnkd protein_coding protein_coding MGP_CASTEiJ_T0019749.1 MGP_CASTEiJ_G0015499.1 mouse_genomes_project 1 73905528 73984357 + MGP_CASTEiJ_P0019749 Pnkd protein_coding protein_coding MGP_CASTEiJ_T0019750.1 MGP_CASTEiJ_G0015499.1 mouse_genomes_project 1 73905533 73907146 + Pnkd protein_coding retained_intron MGP_CASTEiJ_T0019751.1 MGP_CASTEiJ_G0015499.1 mouse_genomes_project 1 73905537 73978279 + Pnkd protein_coding retained_intron MGP_CASTEiJ_T0019752.1 MGP_CASTEiJ_G0015499.1 mouse_genomes_project 1 73905538 73984367 + MGP_CASTEiJ_P0019752 Pnkd protein_coding protein_coding MGP_CASTEiJ_T0019753.1 MGP_CASTEiJ_G0015499.1 mouse_genomes_project 1 73906260 73909753 + Pnkd protein_coding retained_intron MGP_CASTEiJ_T0019761.1 MGP_CASTEiJ_G0015499.1 mouse_genomes_project 1 73962425 73984359 + MGP_CASTEiJ_P0019761 Pnkd protein_coding protein_coding MGP_CASTEiJ_T0019762.1 MGP_CASTEiJ_G0015499.1 mouse_genomes_project 1 73962478 73966045 + Pnkd protein_coding retained_intron MGP_CASTEiJ_T0000443.1 MGP_CASTEiJ_G0000389.1 mouse_genomes_project 1 55817916 55819752 + TEC TEC MGP_CASTEiJ_T0020706.1 MGP_CASTEiJ_G0015686.1 mouse_genomes_project 1 93733340 93803820 + MGP_CASTEiJ_P0020706 Sned1 protein_coding protein_coding MGP_CASTEiJ_T0020707.1 MGP_CASTEiJ_G0015686.1 mouse_genomes_project 1 93733350 93785018 + Sned1 protein_coding retained_intron MGP_CASTEiJ_T0020708.1 MGP_CASTEiJ_G0015686.1 mouse_genomes_project 1 93773443 93782833 + Sned1 protein_coding processed_transcript MGP_CASTEiJ_T0020709.1 MGP_CASTEiJ_G0015686.1 mouse_genomes_project 1 93781752 93798561 + MGP_CASTEiJ_P0020709 Sned1 protein_coding protein_coding MGP_CASTEiJ_T0020710.1 MGP_CASTEiJ_G0015686.1 mouse_genomes_project 1 93787353 93799251 + Sned1 protein_coding retained_intron MGP_CASTEiJ_T0020711.1 MGP_CASTEiJ_G0015686.1 mouse_genomes_project 1 93798468 93799373 + Sned1 protein_coding retained_intron MGP_CASTEiJ_T0101904.1 MGP_CASTEiJ_G0038629.1 mouse_genomes_project 1 18754012 18765923 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0022925.1 MGP_CASTEiJ_G0016142.1 mouse_genomes_project 1 176661383 176662819 + MGP_CASTEiJ_P0022925 Olfr16 protein_coding protein_coding MGP_CASTEiJ_T0005533.1 MGP_CASTEiJ_G0004668.1 mouse_genomes_project 1 34136940 34145604 - Gm33222 lincRNA lincRNA MGP_CASTEiJ_T0005534.1 MGP_CASTEiJ_G0004668.1 mouse_genomes_project 1 34137022 34145550 - Gm33222 lincRNA lincRNA MGP_CASTEiJ_T0098800.1 MGP_CASTEiJ_G0035730.1 mouse_genomes_project 1 155378518 155382840 - Gm15479 sense_intronic sense_intronic MGP_CASTEiJ_T0000348.1 MGP_CASTEiJ_G0000297.1 mouse_genomes_project 1 10708280 10711996 - TEC TEC MGP_CASTEiJ_T0011579.1 MGP_CASTEiJ_G0009742.1 mouse_genomes_project 1 6730405 6731574 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005811.1 MGP_CASTEiJ_G0004883.1 mouse_genomes_project 1 167980890 168014835 + Gm37184 lincRNA lincRNA MGP_CASTEiJ_T0011729.1 MGP_CASTEiJ_G0009892.1 mouse_genomes_project 1 57587018 57597173 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021187.1 MGP_CASTEiJ_G0015784.1 mouse_genomes_project 1 131940973 131989918 - MGP_CASTEiJ_P0021187 Zp3r protein_coding protein_coding MGP_CASTEiJ_T0021188.1 MGP_CASTEiJ_G0015784.1 mouse_genomes_project 1 131940973 131989918 - MGP_CASTEiJ_P0021188 Zp3r protein_coding protein_coding MGP_CASTEiJ_T0021189.1 MGP_CASTEiJ_G0015784.1 mouse_genomes_project 1 131940976 131989909 - MGP_CASTEiJ_P0021189 Zp3r protein_coding protein_coding MGP_CASTEiJ_T0011757.1 MGP_CASTEiJ_G0009920.1 mouse_genomes_project 1 64129756 64130135 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005587.1 MGP_CASTEiJ_G0004702.1 mouse_genomes_project 1 56041331 56055652 - BC055402 lincRNA lincRNA MGP_CASTEiJ_T0002689.1 MGP_CASTEiJ_G0002565.1 mouse_genomes_project 1 37986519 37993736 + D930019O06Rik antisense antisense MGP_CASTEiJ_T0000535.1 MGP_CASTEiJ_G0000481.1 mouse_genomes_project 1 95890626 95894943 + TEC TEC MGP_CASTEiJ_T0098437.1 MGP_CASTEiJ_G0035368.1 mouse_genomes_project 1 152243113 152243222 - n-R5s218 rRNA rRNA MGP_CASTEiJ_T0012011.1 MGP_CASTEiJ_G0010174.1 mouse_genomes_project 1 185806045 185806325 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019369.1 MGP_CASTEiJ_G0015423.1 mouse_genomes_project 1 58881841 58960725 + MGP_CASTEiJ_P0019369 Fam117b protein_coding protein_coding MGP_CASTEiJ_T0019370.1 MGP_CASTEiJ_G0015423.1 mouse_genomes_project 1 58943800 58956846 + MGP_CASTEiJ_P0019370 Fam117b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019371.1 MGP_CASTEiJ_G0015423.1 mouse_genomes_project 1 58954562 58956270 + Fam117b protein_coding retained_intron MGP_CASTEiJ_T0019234.1 MGP_CASTEiJ_G0015401.1 mouse_genomes_project 1 57248438 57264673 + MGP_CASTEiJ_P0019234 Bzw1 protein_coding protein_coding MGP_CASTEiJ_T0019235.1 MGP_CASTEiJ_G0015401.1 mouse_genomes_project 1 57248664 57258563 + MGP_CASTEiJ_P0019235 Bzw1 protein_coding protein_coding MGP_CASTEiJ_T0019236.1 MGP_CASTEiJ_G0015401.1 mouse_genomes_project 1 57248672 57262820 + MGP_CASTEiJ_P0019236 Bzw1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019237.1 MGP_CASTEiJ_G0015401.1 mouse_genomes_project 1 57249010 57262464 + MGP_CASTEiJ_P0019237 Bzw1 protein_coding protein_coding MGP_CASTEiJ_T0023396.1 MGP_CASTEiJ_G0016262.1 mouse_genomes_project 1 190723437 190748866 - MGP_CASTEiJ_P0023396 Lyplal1 protein_coding protein_coding MGP_CASTEiJ_T0023397.1 MGP_CASTEiJ_G0016262.1 mouse_genomes_project 1 190724241 190748844 - Lyplal1 protein_coding processed_transcript MGP_CASTEiJ_T0100275.1 MGP_CASTEiJ_G0037188.1 mouse_genomes_project 1 57944350 57944481 + Gm25502 snoRNA snoRNA MGP_CASTEiJ_T0002862.1 MGP_CASTEiJ_G0002698.1 mouse_genomes_project 1 184548152 184566377 + Gm31728 antisense antisense MGP_CASTEiJ_T0009320.1 MGP_CASTEiJ_G0007508.1 mouse_genomes_project 1 197024838 197024919 - Mir3473c miRNA miRNA MGP_CASTEiJ_T0000715.1 MGP_CASTEiJ_G0000659.1 mouse_genomes_project 1 181061809 181063370 - TEC TEC MGP_CASTEiJ_T0000389.1 MGP_CASTEiJ_G0000336.1 mouse_genomes_project 1 23576060 23576390 - TEC TEC MGP_CASTEiJ_T0019328.1 MGP_CASTEiJ_G0015416.1 mouse_genomes_project 1 58038032 58119759 - MGP_CASTEiJ_P0019328 protein_coding unknown_likely_coding MGP_CASTEiJ_T0019329.1 MGP_CASTEiJ_G0015416.1 mouse_genomes_project 1 58070582 58119666 - protein_coding retained_intron MGP_CASTEiJ_T0019330.1 MGP_CASTEiJ_G0015416.1 mouse_genomes_project 1 58096895 58119661 - MGP_CASTEiJ_P0019330 protein_coding protein_coding MGP_CASTEiJ_T0019331.1 MGP_CASTEiJ_G0015416.1 mouse_genomes_project 1 58097585 58100373 - protein_coding retained_intron MGP_CASTEiJ_T0021246.1 MGP_CASTEiJ_G0015801.1 mouse_genomes_project 1 132652031 132662786 - Ikbke protein_coding retained_intron MGP_CASTEiJ_T0021247.1 MGP_CASTEiJ_G0015801.1 mouse_genomes_project 1 132652282 132675448 - MGP_CASTEiJ_P0021247 Ikbke protein_coding protein_coding MGP_CASTEiJ_T0021248.1 MGP_CASTEiJ_G0015801.1 mouse_genomes_project 1 132656706 132663939 - Ikbke protein_coding retained_intron MGP_CASTEiJ_T0021249.1 MGP_CASTEiJ_G0015801.1 mouse_genomes_project 1 132661008 132668171 - Ikbke protein_coding retained_intron MGP_CASTEiJ_T0021250.1 MGP_CASTEiJ_G0015801.1 mouse_genomes_project 1 132668527 132670163 - Ikbke protein_coding retained_intron MGP_CASTEiJ_T0021251.1 MGP_CASTEiJ_G0015801.1 mouse_genomes_project 1 132671413 132675611 - MGP_CASTEiJ_P0021251 Ikbke protein_coding protein_coding MGP_CASTEiJ_T0018312.1 MGP_CASTEiJ_G0015217.1 mouse_genomes_project 1 15752341 15753313 - MGP_CASTEiJ_P0018312 Defb18 protein_coding protein_coding MGP_CASTEiJ_T0020536.1 MGP_CASTEiJ_G0015649.1 mouse_genomes_project 1 91343807 91344727 + MGP_CASTEiJ_P0020536 Prlh protein_coding protein_coding MGP_CASTEiJ_T0018925.1 MGP_CASTEiJ_G0015342.1 mouse_genomes_project 1 42894962 42910698 - MGP_CASTEiJ_P0018925 Mettl21e protein_coding protein_coding MGP_CASTEiJ_T0018926.1 MGP_CASTEiJ_G0015342.1 mouse_genomes_project 1 42897372 42910650 - Mettl21e protein_coding retained_intron MGP_CASTEiJ_T0021766.1 MGP_CASTEiJ_G0015908.1 mouse_genomes_project 1 145981998 145993793 + MGP_CASTEiJ_P0021766 B3galt2 protein_coding protein_coding MGP_CASTEiJ_T0000606.1 MGP_CASTEiJ_G0000551.1 mouse_genomes_project 1 137197505 137199775 - TEC TEC MGP_CASTEiJ_T0005789.1 MGP_CASTEiJ_G0004866.1 mouse_genomes_project 1 157897538 157921279 - Gm9530 lincRNA lincRNA MGP_CASTEiJ_T0019734.1 MGP_CASTEiJ_G0015494.1 mouse_genomes_project 1 73764243 73773404 + MGP_CASTEiJ_P0019734 Cxcr2 protein_coding protein_coding MGP_CASTEiJ_T0005735.1 MGP_CASTEiJ_G0004821.1 mouse_genomes_project 1 126524112 126526954 + Gm28706 lincRNA lincRNA MGP_CASTEiJ_T0002739.1 MGP_CASTEiJ_G0002600.1 mouse_genomes_project 1 75026484 75030723 - Gm15178 antisense antisense MGP_CASTEiJ_T0022675.1 MGP_CASTEiJ_G0016087.1 mouse_genomes_project 1 174660799 174684913 - MGP_CASTEiJ_P0022675 Sdhc protein_coding protein_coding MGP_CASTEiJ_T0022676.1 MGP_CASTEiJ_G0016087.1 mouse_genomes_project 1 174661052 174684897 - MGP_CASTEiJ_P0022676 Sdhc protein_coding protein_coding MGP_CASTEiJ_T0005837.1 MGP_CASTEiJ_G0004905.1 mouse_genomes_project 1 181643733 181649287 - Gm37280 lincRNA lincRNA MGP_CASTEiJ_T0021287.1 MGP_CASTEiJ_G0015810.1 mouse_genomes_project 1 133272058 133277346 + MGP_CASTEiJ_P0021287 Rab29 protein_coding protein_coding MGP_CASTEiJ_T0021288.1 MGP_CASTEiJ_G0015810.1 mouse_genomes_project 1 133272074 133277494 + MGP_CASTEiJ_P0021288 Rab29 protein_coding protein_coding MGP_CASTEiJ_T0021289.1 MGP_CASTEiJ_G0015810.1 mouse_genomes_project 1 133272345 133277108 + MGP_CASTEiJ_P0021289 Rab29 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021290.1 MGP_CASTEiJ_G0015810.1 mouse_genomes_project 1 133272487 133275784 + Rab29 protein_coding retained_intron MGP_CASTEiJ_T0005887.1 MGP_CASTEiJ_G0004941.1 mouse_genomes_project 1 195333539 195359679 - Gm30725 lincRNA lincRNA MGP_CASTEiJ_T0011745.1 MGP_CASTEiJ_G0009908.1 mouse_genomes_project 1 60250854 60251560 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099096.1 MGP_CASTEiJ_G0036009.1 mouse_genomes_project 1 70032815 70032921 + Gm23422 snRNA snRNA MGP_CASTEiJ_T0101494.1 MGP_CASTEiJ_G0038400.1 mouse_genomes_project 1 176142424 176159153 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101495.1 MGP_CASTEiJ_G0038400.1 mouse_genomes_project 1 176158217 176159071 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0012010.1 MGP_CASTEiJ_G0010173.1 mouse_genomes_project 1 185675214 185677067 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000575.1 MGP_CASTEiJ_G0000521.1 mouse_genomes_project 1 128461088 128465675 + TEC TEC MGP_CASTEiJ_T0005615.1 MGP_CASTEiJ_G0004726.1 mouse_genomes_project 1 68806051 68809074 + Gm28497 lincRNA lincRNA MGP_CASTEiJ_T0099126.1 MGP_CASTEiJ_G0036039.1 mouse_genomes_project 1 147318276 147318382 - Gm22681 snRNA snRNA MGP_CASTEiJ_T0011569.1 MGP_CASTEiJ_G0009732.1 mouse_genomes_project 1 4644462 4645475 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009230.1 MGP_CASTEiJ_G0007418.1 mouse_genomes_project 1 27212195 27212293 + Gm22679 miRNA miRNA MGP_CASTEiJ_T0022393.1 MGP_CASTEiJ_G0016020.1 mouse_genomes_project 1 167172192 167202427 + MGP_CASTEiJ_P0022393 Scyl3 protein_coding protein_coding MGP_CASTEiJ_T0022394.1 MGP_CASTEiJ_G0016020.1 mouse_genomes_project 1 167172899 167202851 + MGP_CASTEiJ_P0022394 Scyl3 protein_coding protein_coding MGP_CASTEiJ_T0022395.1 MGP_CASTEiJ_G0016020.1 mouse_genomes_project 1 167172924 167202835 + MGP_CASTEiJ_P0022395 Scyl3 protein_coding protein_coding MGP_CASTEiJ_T0022396.1 MGP_CASTEiJ_G0016020.1 mouse_genomes_project 1 167172939 167202834 + MGP_CASTEiJ_P0022396 Scyl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022397.1 MGP_CASTEiJ_G0016020.1 mouse_genomes_project 1 167187396 167202839 + MGP_CASTEiJ_P0022397 Scyl3 protein_coding protein_coding MGP_CASTEiJ_T0022398.1 MGP_CASTEiJ_G0016020.1 mouse_genomes_project 1 167190143 167191232 + Scyl3 protein_coding processed_transcript MGP_CASTEiJ_T0022400.1 MGP_CASTEiJ_G0016020.1 mouse_genomes_project 1 167197600 167201527 + Scyl3 protein_coding retained_intron MGP_CASTEiJ_T0002772.1 MGP_CASTEiJ_G0002627.1 mouse_genomes_project 1 128948743 128969144 - 2900009J06Rik antisense antisense MGP_CASTEiJ_T0002773.1 MGP_CASTEiJ_G0002627.1 mouse_genomes_project 1 128948743 128969106 - 2900009J06Rik antisense antisense MGP_CASTEiJ_T0019219.1 MGP_CASTEiJ_G0015396.1 mouse_genomes_project 1 56851160 56883493 + MGP_CASTEiJ_P0019219 protein_coding protein_coding MGP_CASTEiJ_T0019220.1 MGP_CASTEiJ_G0015396.1 mouse_genomes_project 1 56880310 56883492 + protein_coding retained_intron MGP_CASTEiJ_T0018971.1 MGP_CASTEiJ_G0015353.1 mouse_genomes_project 1 49564443 49578348 + Tmeff2 protein_coding processed_transcript MGP_CASTEiJ_T0018972.1 MGP_CASTEiJ_G0015353.1 mouse_genomes_project 1 49564443 49576063 + Tmeff2 protein_coding processed_transcript MGP_CASTEiJ_T0018973.1 MGP_CASTEiJ_G0015353.1 mouse_genomes_project 1 49572141 49649759 + MGP_CASTEiJ_P0018973 Tmeff2 protein_coding protein_coding MGP_CASTEiJ_T0018974.1 MGP_CASTEiJ_G0015353.1 mouse_genomes_project 1 49590464 49871074 + MGP_CASTEiJ_P0018974 Tmeff2 protein_coding protein_coding MGP_CASTEiJ_T0022337.1 MGP_CASTEiJ_G0016007.1 mouse_genomes_project 1 165888733 165899168 + MGP_CASTEiJ_P0022337 Myoc protein_coding protein_coding MGP_CASTEiJ_T0022338.1 MGP_CASTEiJ_G0016007.1 mouse_genomes_project 1 165888736 165899177 + MGP_CASTEiJ_P0022338 Myoc protein_coding unknown_likely_coding MGP_CASTEiJ_T0000388.1 MGP_CASTEiJ_G0000335.1 mouse_genomes_project 1 23559319 23560251 - TEC TEC MGP_CASTEiJ_T0099076.1 MGP_CASTEiJ_G0035989.1 mouse_genomes_project 1 30569657 30569720 - Gm24732 snRNA snRNA MGP_CASTEiJ_T0011959.1 MGP_CASTEiJ_G0010122.1 mouse_genomes_project 1 160533327 160534128 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011627.1 MGP_CASTEiJ_G0009790.1 mouse_genomes_project 1 25712425 25713079 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020481.1 MGP_CASTEiJ_G0015631.1 mouse_genomes_project 1 88282669 88339172 + MGP_CASTEiJ_P0020481 Ugt1a5 protein_coding protein_coding MGP_CASTEiJ_T0018080.1 MGP_CASTEiJ_G0015174.1 mouse_genomes_project 1 5667706 6567688 - MGP_CASTEiJ_P0018080 Sntg1 protein_coding protein_coding MGP_CASTEiJ_T0018081.1 MGP_CASTEiJ_G0015174.1 mouse_genomes_project 1 5667706 6567023 - MGP_CASTEiJ_P0018081 Sntg1 protein_coding protein_coding MGP_CASTEiJ_T0018082.1 MGP_CASTEiJ_G0015174.1 mouse_genomes_project 1 5667706 6567314 - MGP_CASTEiJ_P0018082 Sntg1 protein_coding protein_coding MGP_CASTEiJ_T0018083.1 MGP_CASTEiJ_G0015174.1 mouse_genomes_project 1 5668909 6568329 - MGP_CASTEiJ_P0018083 Sntg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018084.1 MGP_CASTEiJ_G0015174.1 mouse_genomes_project 1 5669414 5764280 - Sntg1 protein_coding processed_transcript MGP_CASTEiJ_T0018085.1 MGP_CASTEiJ_G0015174.1 mouse_genomes_project 1 5669656 5764239 - Sntg1 protein_coding processed_transcript MGP_CASTEiJ_T0018086.1 MGP_CASTEiJ_G0015174.1 mouse_genomes_project 1 5669706 6075090 - MGP_CASTEiJ_P0018086 Sntg1 protein_coding protein_coding MGP_CASTEiJ_T0018087.1 MGP_CASTEiJ_G0015174.1 mouse_genomes_project 1 5957991 6567732 - MGP_CASTEiJ_P0018087 Sntg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018088.1 MGP_CASTEiJ_G0015174.1 mouse_genomes_project 1 6053275 6567959 - Sntg1 protein_coding retained_intron MGP_CASTEiJ_T0018089.1 MGP_CASTEiJ_G0015174.1 mouse_genomes_project 1 6239737 6241850 - Sntg1 protein_coding retained_intron MGP_CASTEiJ_T0018090.1 MGP_CASTEiJ_G0015174.1 mouse_genomes_project 1 6239999 6566686 - Sntg1 protein_coding processed_transcript MGP_CASTEiJ_T0101909.1 MGP_CASTEiJ_G0038634.1 mouse_genomes_project 1 62304106 62304477 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0023244.1 MGP_CASTEiJ_G0016229.1 mouse_genomes_project 1 185916493 185918742 - MGP_CASTEiJ_P0023244 Ccdc121 protein_coding protein_coding MGP_CASTEiJ_T0005780.1 MGP_CASTEiJ_G0004860.1 mouse_genomes_project 1 156814654 156817629 - Gm29291 lincRNA lincRNA MGP_CASTEiJ_T0005781.1 MGP_CASTEiJ_G0004860.1 mouse_genomes_project 1 156814810 156817633 - Gm29291 lincRNA lincRNA MGP_CASTEiJ_T0012002.1 MGP_CASTEiJ_G0010165.1 mouse_genomes_project 1 181300148 181300465 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011953.1 MGP_CASTEiJ_G0010116.1 mouse_genomes_project 1 158034533 158035114 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020841.1 MGP_CASTEiJ_G0015711.1 mouse_genomes_project 1 98882610 98974873 + MGP_CASTEiJ_P0020841 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020842.1 MGP_CASTEiJ_G0015711.1 mouse_genomes_project 1 98882637 98967782 + MGP_CASTEiJ_P0020842 protein_coding protein_coding MGP_CASTEiJ_T0011808.1 MGP_CASTEiJ_G0009971.1 mouse_genomes_project 1 89357118 89357361 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005742.1 MGP_CASTEiJ_G0004827.1 mouse_genomes_project 1 133631088 133633818 - 1700037F24Rik lincRNA lincRNA MGP_CASTEiJ_T0000762.1 MGP_CASTEiJ_G0000703.1 mouse_genomes_project 1 198285104 198288685 + TEC TEC MGP_CASTEiJ_T0011904.1 MGP_CASTEiJ_G0010067.1 mouse_genomes_project 1 132839985 132840241 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020017.1 MGP_CASTEiJ_G0015540.1 mouse_genomes_project 1 75070572 75077875 + MGP_CASTEiJ_P0020017 Gmppa protein_coding protein_coding MGP_CASTEiJ_T0020018.1 MGP_CASTEiJ_G0015540.1 mouse_genomes_project 1 75070585 75077874 + MGP_CASTEiJ_P0020018 Gmppa protein_coding protein_coding MGP_CASTEiJ_T0020019.1 MGP_CASTEiJ_G0015540.1 mouse_genomes_project 1 75070603 75073547 + MGP_CASTEiJ_P0020019 Gmppa protein_coding protein_coding MGP_CASTEiJ_T0020020.1 MGP_CASTEiJ_G0015540.1 mouse_genomes_project 1 75070609 75075214 + MGP_CASTEiJ_P0020020 Gmppa protein_coding protein_coding MGP_CASTEiJ_T0020021.1 MGP_CASTEiJ_G0015540.1 mouse_genomes_project 1 75070610 75076216 + MGP_CASTEiJ_P0020021 Gmppa protein_coding protein_coding MGP_CASTEiJ_T0020022.1 MGP_CASTEiJ_G0015540.1 mouse_genomes_project 1 75070624 75076310 + MGP_CASTEiJ_P0020022 Gmppa protein_coding protein_coding MGP_CASTEiJ_T0020023.1 MGP_CASTEiJ_G0015540.1 mouse_genomes_project 1 75070626 75074101 + MGP_CASTEiJ_P0020023 Gmppa protein_coding protein_coding MGP_CASTEiJ_T0020024.1 MGP_CASTEiJ_G0015540.1 mouse_genomes_project 1 75070729 75076225 + MGP_CASTEiJ_P0020024 Gmppa protein_coding protein_coding MGP_CASTEiJ_T0020025.1 MGP_CASTEiJ_G0015540.1 mouse_genomes_project 1 75070755 75072970 + MGP_CASTEiJ_P0020025 Gmppa protein_coding protein_coding MGP_CASTEiJ_T0020026.1 MGP_CASTEiJ_G0015540.1 mouse_genomes_project 1 75071584 75076730 + MGP_CASTEiJ_P0020026 Gmppa protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020027.1 MGP_CASTEiJ_G0015540.1 mouse_genomes_project 1 75076320 75077633 + Gmppa protein_coding retained_intron MGP_CASTEiJ_T0020028.1 MGP_CASTEiJ_G0015540.1 mouse_genomes_project 1 75076867 75077874 + Gmppa protein_coding retained_intron MGP_CASTEiJ_T0020029.1 MGP_CASTEiJ_G0015540.1 mouse_genomes_project 1 75076925 75077880 + Gmppa protein_coding retained_intron MGP_CASTEiJ_T0000568.1 MGP_CASTEiJ_G0000514.1 mouse_genomes_project 1 124871210 124874066 - TEC TEC MGP_CASTEiJ_T0016313.1 MGP_CASTEiJ_G0014429.1 mouse_genomes_project 1 139757810 139758922 + Gm4258 processed_transcript retained_intron MGP_CASTEiJ_T0016314.1 MGP_CASTEiJ_G0014429.1 mouse_genomes_project 1 139757813 139865841 + Gm4258 processed_transcript lincRNA MGP_CASTEiJ_T0019737.1 MGP_CASTEiJ_G0015496.1 mouse_genomes_project 1 73851992 73852797 + MGP_CASTEiJ_P0019737 Arpc2 protein_coding protein_coding MGP_CASTEiJ_T0019738.1 MGP_CASTEiJ_G0015496.1 mouse_genomes_project 1 73852405 73886352 + MGP_CASTEiJ_P0019738 Arpc2 protein_coding protein_coding MGP_CASTEiJ_T0019739.1 MGP_CASTEiJ_G0015496.1 mouse_genomes_project 1 73852425 73886132 + MGP_CASTEiJ_P0019739 Arpc2 protein_coding protein_coding MGP_CASTEiJ_T0019740.1 MGP_CASTEiJ_G0015496.1 mouse_genomes_project 1 73852458 73886133 + MGP_CASTEiJ_P0019740 Arpc2 protein_coding protein_coding MGP_CASTEiJ_T0000555.1 MGP_CASTEiJ_G0000501.1 mouse_genomes_project 1 120597648 120605817 - TEC TEC MGP_CASTEiJ_T0020088.1 MGP_CASTEiJ_G0015551.1 mouse_genomes_project 1 78185148 78260838 - MGP_CASTEiJ_P0020088 Farsb protein_coding protein_coding MGP_CASTEiJ_T0020089.1 MGP_CASTEiJ_G0015551.1 mouse_genomes_project 1 78192220 78260876 - MGP_CASTEiJ_P0020089 Farsb protein_coding protein_coding MGP_CASTEiJ_T0020090.1 MGP_CASTEiJ_G0015551.1 mouse_genomes_project 1 78192237 78260841 - MGP_CASTEiJ_P0020090 Farsb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020091.1 MGP_CASTEiJ_G0015551.1 mouse_genomes_project 1 78234205 78260838 - MGP_CASTEiJ_P0020091 Farsb protein_coding protein_coding MGP_CASTEiJ_T0020092.1 MGP_CASTEiJ_G0015551.1 mouse_genomes_project 1 78242408 78260774 - Farsb protein_coding processed_transcript MGP_CASTEiJ_T0020093.1 MGP_CASTEiJ_G0015551.1 mouse_genomes_project 1 78243813 78260821 - MGP_CASTEiJ_P0020093 Farsb protein_coding protein_coding MGP_CASTEiJ_T0020094.1 MGP_CASTEiJ_G0015551.1 mouse_genomes_project 1 78249848 78260816 - Farsb protein_coding retained_intron MGP_CASTEiJ_T0011459.1 MGP_CASTEiJ_G0009645.1 mouse_genomes_project 1 178087171 178088221 + MGP_CASTEiJ_P0011459 Olfr421-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0099117.1 MGP_CASTEiJ_G0036030.1 mouse_genomes_project 1 133527027 133527141 + Gm26034 snRNA snRNA MGP_CASTEiJ_T0005678.1 MGP_CASTEiJ_G0004775.1 mouse_genomes_project 1 91825543 91826698 - 1700020N18Rik lincRNA lincRNA MGP_CASTEiJ_T0000435.1 MGP_CASTEiJ_G0000381.1 mouse_genomes_project 1 51389499 51391388 - TEC TEC MGP_CASTEiJ_T0000727.1 MGP_CASTEiJ_G0000670.1 mouse_genomes_project 1 184674517 184675400 + TEC TEC MGP_CASTEiJ_T0021557.1 MGP_CASTEiJ_G0015867.1 mouse_genomes_project 1 136798315 136805695 - MGP_CASTEiJ_P0021557 Gpr37l1 protein_coding protein_coding MGP_CASTEiJ_T0011671.1 MGP_CASTEiJ_G0009834.1 mouse_genomes_project 1 43303478 43303898 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010917.1 MGP_CASTEiJ_G0009105.1 mouse_genomes_project 1 58560584 58560669 + Gm24545 misc_RNA misc_RNA MGP_CASTEiJ_T0021995.1 MGP_CASTEiJ_G0015951.1 mouse_genomes_project 1 156689548 156690872 + MGP_CASTEiJ_P0021995 Teddm1a protein_coding protein_coding MGP_CASTEiJ_T0005808.1 MGP_CASTEiJ_G0004880.1 mouse_genomes_project 1 167796696 167806961 + Gm26685 lincRNA lincRNA MGP_CASTEiJ_T0022090.1 MGP_CASTEiJ_G0015969.1 mouse_genomes_project 1 159191540 159295836 - MGP_CASTEiJ_P0022090 Axdnd1 protein_coding protein_coding MGP_CASTEiJ_T0022091.1 MGP_CASTEiJ_G0015969.1 mouse_genomes_project 1 159191540 159299585 - MGP_CASTEiJ_P0022091 Axdnd1 protein_coding protein_coding MGP_CASTEiJ_T0022092.1 MGP_CASTEiJ_G0015969.1 mouse_genomes_project 1 159198669 159296954 - MGP_CASTEiJ_P0022092 Axdnd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022093.1 MGP_CASTEiJ_G0015969.1 mouse_genomes_project 1 159198669 159297397 - MGP_CASTEiJ_P0022093 Axdnd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022094.1 MGP_CASTEiJ_G0015969.1 mouse_genomes_project 1 159225870 159245188 - Axdnd1 protein_coding processed_transcript MGP_CASTEiJ_T0022095.1 MGP_CASTEiJ_G0015969.1 mouse_genomes_project 1 159233070 159272468 - Axdnd1 protein_coding processed_transcript MGP_CASTEiJ_T0022096.1 MGP_CASTEiJ_G0015969.1 mouse_genomes_project 1 159233684 159271034 - MGP_CASTEiJ_P0022096 Axdnd1 protein_coding protein_coding MGP_CASTEiJ_T0022097.1 MGP_CASTEiJ_G0015969.1 mouse_genomes_project 1 159272516 159275402 - Axdnd1 protein_coding processed_transcript MGP_CASTEiJ_T0022098.1 MGP_CASTEiJ_G0015969.1 mouse_genomes_project 1 159295886 159297412 - MGP_CASTEiJ_P0022098 Axdnd1 protein_coding protein_coding MGP_CASTEiJ_T0022099.1 MGP_CASTEiJ_G0015969.1 mouse_genomes_project 1 159295886 159297448 - MGP_CASTEiJ_P0022099 Axdnd1 protein_coding protein_coding MGP_CASTEiJ_T0000482.1 MGP_CASTEiJ_G0000428.1 mouse_genomes_project 1 73910011 73910308 - TEC TEC MGP_CASTEiJ_T0101713.1 MGP_CASTEiJ_G0038529.1 mouse_genomes_project 1 57719717 57719847 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0019505.1 MGP_CASTEiJ_G0015447.1 mouse_genomes_project 1 63211340 63305087 - MGP_CASTEiJ_P0019505 Klf7 protein_coding protein_coding MGP_CASTEiJ_T0019506.1 MGP_CASTEiJ_G0015447.1 mouse_genomes_project 1 63224758 63305078 - MGP_CASTEiJ_P0019506 Klf7 protein_coding protein_coding MGP_CASTEiJ_T0019507.1 MGP_CASTEiJ_G0015447.1 mouse_genomes_project 1 63261957 63306128 - MGP_CASTEiJ_P0019507 Klf7 protein_coding protein_coding MGP_CASTEiJ_T0000734.1 MGP_CASTEiJ_G0000677.1 mouse_genomes_project 1 186436813 186440679 - TEC TEC MGP_CASTEiJ_T0000381.1 MGP_CASTEiJ_G0000328.1 mouse_genomes_project 1 23426077 23431492 - TEC TEC MGP_CASTEiJ_T0101847.1 MGP_CASTEiJ_G0038595.1 mouse_genomes_project 1 63078295 63097734 + unitary_pseudogene unitary_pseudogene MGP_CASTEiJ_T0011832.1 MGP_CASTEiJ_G0009995.1 mouse_genomes_project 1 102256131 102256863 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022419.1 MGP_CASTEiJ_G0016026.1 mouse_genomes_project 1 167422009 167493196 + MGP_CASTEiJ_P0022419 F5 protein_coding protein_coding MGP_CASTEiJ_T0000534.1 MGP_CASTEiJ_G0000480.1 mouse_genomes_project 1 94048154 94050517 + TEC TEC MGP_CASTEiJ_T0018226.1 MGP_CASTEiJ_G0015197.1 mouse_genomes_project 1 11574858 11724818 - MGP_CASTEiJ_P0018226 Eya1 protein_coding protein_coding MGP_CASTEiJ_T0018227.1 MGP_CASTEiJ_G0015197.1 mouse_genomes_project 1 11574862 11724853 - MGP_CASTEiJ_P0018227 Eya1 protein_coding protein_coding MGP_CASTEiJ_T0018228.1 MGP_CASTEiJ_G0015197.1 mouse_genomes_project 1 11575570 11724737 - MGP_CASTEiJ_P0018228 Eya1 protein_coding protein_coding MGP_CASTEiJ_T0018229.1 MGP_CASTEiJ_G0015197.1 mouse_genomes_project 1 11576546 11719157 - MGP_CASTEiJ_P0018229 Eya1 protein_coding protein_coding MGP_CASTEiJ_T0018230.1 MGP_CASTEiJ_G0015197.1 mouse_genomes_project 1 11618582 11644989 - MGP_CASTEiJ_P0018230 Eya1 protein_coding protein_coding MGP_CASTEiJ_T0018231.1 MGP_CASTEiJ_G0015197.1 mouse_genomes_project 1 11667875 11719206 - MGP_CASTEiJ_P0018231 Eya1 protein_coding protein_coding MGP_CASTEiJ_T0018232.1 MGP_CASTEiJ_G0015197.1 mouse_genomes_project 1 11685803 11719215 - MGP_CASTEiJ_P0018232 Eya1 protein_coding protein_coding MGP_CASTEiJ_T0018233.1 MGP_CASTEiJ_G0015197.1 mouse_genomes_project 1 11685871 11724454 - MGP_CASTEiJ_P0018233 Eya1 protein_coding protein_coding MGP_CASTEiJ_T0018234.1 MGP_CASTEiJ_G0015197.1 mouse_genomes_project 1 11715783 11724669 - Eya1 protein_coding retained_intron MGP_CASTEiJ_T0000484.1 MGP_CASTEiJ_G0000430.1 mouse_genomes_project 1 74150637 74153609 - TEC TEC MGP_CASTEiJ_T0011644.1 MGP_CASTEiJ_G0009807.1 mouse_genomes_project 1 31984998 31985331 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011722.1 MGP_CASTEiJ_G0009885.1 mouse_genomes_project 1 54127293 54127691 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020365.1 MGP_CASTEiJ_G0015611.1 mouse_genomes_project 1 87213357 87217020 + MGP_CASTEiJ_P0020365 Chrng protein_coding protein_coding MGP_CASTEiJ_T0020366.1 MGP_CASTEiJ_G0015611.1 mouse_genomes_project 1 87214508 87217019 + MGP_CASTEiJ_P0020366 Chrng protein_coding protein_coding MGP_CASTEiJ_T0020367.1 MGP_CASTEiJ_G0015611.1 mouse_genomes_project 1 87214509 87221685 + MGP_CASTEiJ_P0020367 Chrng protein_coding protein_coding MGP_CASTEiJ_T0020368.1 MGP_CASTEiJ_G0015611.1 mouse_genomes_project 1 87214583 87217019 + MGP_CASTEiJ_P0020368 Chrng protein_coding protein_coding MGP_CASTEiJ_T0020369.1 MGP_CASTEiJ_G0015611.1 mouse_genomes_project 1 87214772 87217317 + Chrng protein_coding retained_intron MGP_CASTEiJ_T0016357.1 MGP_CASTEiJ_G0014441.1 mouse_genomes_project 1 181501466 181504367 + Gm29856 processed_transcript processed_transcript MGP_CASTEiJ_T0016358.1 MGP_CASTEiJ_G0014441.1 mouse_genomes_project 1 181503345 181504368 + Gm29856 processed_transcript processed_transcript MGP_CASTEiJ_T0101952.1 MGP_CASTEiJ_G0038677.1 mouse_genomes_project 1 178102972 178105515 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0018315.1 MGP_CASTEiJ_G0015219.1 mouse_genomes_project 1 16661603 16721280 + MGP_CASTEiJ_P0018315 Tfap2d protein_coding protein_coding MGP_CASTEiJ_T0018316.1 MGP_CASTEiJ_G0015219.1 mouse_genomes_project 1 16665753 16702571 + Tfap2d protein_coding processed_transcript MGP_CASTEiJ_T0023561.1 MGP_CASTEiJ_G0016295.1 mouse_genomes_project 1 197023489 197024903 - Traf5 protein_coding retained_intron MGP_CASTEiJ_T0023562.1 MGP_CASTEiJ_G0016295.1 mouse_genomes_project 1 197023489 197026263 - MGP_CASTEiJ_P0023562 Traf5 protein_coding protein_coding MGP_CASTEiJ_T0023563.1 MGP_CASTEiJ_G0016295.1 mouse_genomes_project 1 197023714 197052025 - MGP_CASTEiJ_P0023563 Traf5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023564.1 MGP_CASTEiJ_G0016295.1 mouse_genomes_project 1 197023714 197074639 - MGP_CASTEiJ_P0023564 Traf5 protein_coding protein_coding MGP_CASTEiJ_T0023565.1 MGP_CASTEiJ_G0016295.1 mouse_genomes_project 1 197033099 197037677 - MGP_CASTEiJ_P0023565 Traf5 protein_coding protein_coding MGP_CASTEiJ_T0023566.1 MGP_CASTEiJ_G0016295.1 mouse_genomes_project 1 197034126 197037677 - Traf5 protein_coding retained_intron MGP_CASTEiJ_T0023386.1 MGP_CASTEiJ_G0016260.1 mouse_genomes_project 1 189964859 190016851 + Eprs protein_coding retained_intron MGP_CASTEiJ_T0023387.1 MGP_CASTEiJ_G0016260.1 mouse_genomes_project 1 189964859 190036547 + MGP_CASTEiJ_P0023387 Eprs protein_coding protein_coding MGP_CASTEiJ_T0023388.1 MGP_CASTEiJ_G0016260.1 mouse_genomes_project 1 189964873 189968773 + Eprs protein_coding retained_intron MGP_CASTEiJ_T0023389.1 MGP_CASTEiJ_G0016260.1 mouse_genomes_project 1 189964947 189979609 + Eprs protein_coding retained_intron MGP_CASTEiJ_T0023390.1 MGP_CASTEiJ_G0016260.1 mouse_genomes_project 1 189964999 189984487 + MGP_CASTEiJ_P0023390 Eprs protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023391.1 MGP_CASTEiJ_G0016260.1 mouse_genomes_project 1 189967294 189975954 + Eprs protein_coding retained_intron MGP_CASTEiJ_T0023392.1 MGP_CASTEiJ_G0016260.1 mouse_genomes_project 1 189969413 189981537 + MGP_CASTEiJ_P0023392 Eprs protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023393.1 MGP_CASTEiJ_G0016260.1 mouse_genomes_project 1 189969420 189976973 + Eprs protein_coding retained_intron MGP_CASTEiJ_T0023394.1 MGP_CASTEiJ_G0016260.1 mouse_genomes_project 1 190004970 190010098 + Eprs protein_coding retained_intron MGP_CASTEiJ_T0020490.1 MGP_CASTEiJ_G0015637.1 mouse_genomes_project 1 88652795 88674432 + MGP_CASTEiJ_P0020490 Spp2 protein_coding protein_coding MGP_CASTEiJ_T0020491.1 MGP_CASTEiJ_G0015637.1 mouse_genomes_project 1 88653047 88674428 + MGP_CASTEiJ_P0020491 Spp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021505.1 MGP_CASTEiJ_G0015856.1 mouse_genomes_project 1 135993628 136011652 + MGP_CASTEiJ_P0021505 Adipor1 protein_coding protein_coding MGP_CASTEiJ_T0021506.1 MGP_CASTEiJ_G0015856.1 mouse_genomes_project 1 135993706 136011649 + MGP_CASTEiJ_P0021506 Adipor1 protein_coding protein_coding MGP_CASTEiJ_T0021507.1 MGP_CASTEiJ_G0015856.1 mouse_genomes_project 1 135993721 135994191 + Adipor1 protein_coding processed_transcript MGP_CASTEiJ_T0021508.1 MGP_CASTEiJ_G0015856.1 mouse_genomes_project 1 135993814 136005213 + Adipor1 protein_coding retained_intron MGP_CASTEiJ_T0018515.1 MGP_CASTEiJ_G0015262.1 mouse_genomes_project 1 32557660 32563475 + MGP_CASTEiJ_P0018515 protein_coding protein_coding MGP_CASTEiJ_T0018516.1 MGP_CASTEiJ_G0015262.1 mouse_genomes_project 1 32557671 32559391 + MGP_CASTEiJ_P0018516 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021044.1 MGP_CASTEiJ_G0015756.1 mouse_genomes_project 1 121191928 121194516 + MGP_CASTEiJ_P0021044 C1ql2 protein_coding protein_coding MGP_CASTEiJ_T0021045.1 MGP_CASTEiJ_G0015756.1 mouse_genomes_project 1 121192328 121208962 + MGP_CASTEiJ_P0021045 C1ql2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002657.1 MGP_CASTEiJ_G0002541.1 mouse_genomes_project 1 13672764 13688325 + Gm28095 antisense antisense MGP_CASTEiJ_T0022914.1 MGP_CASTEiJ_G0016136.1 mouse_genomes_project 1 176243991 176251791 + MGP_CASTEiJ_P0022914 Vsig8 protein_coding protein_coding MGP_CASTEiJ_T0022915.1 MGP_CASTEiJ_G0016136.1 mouse_genomes_project 1 176247927 176251790 + MGP_CASTEiJ_P0022915 Vsig8 protein_coding protein_coding MGP_CASTEiJ_T0021465.1 MGP_CASTEiJ_G0015847.1 mouse_genomes_project 1 135675001 135718717 + MGP_CASTEiJ_P0021465 Chit1 protein_coding protein_coding MGP_CASTEiJ_T0021466.1 MGP_CASTEiJ_G0015847.1 mouse_genomes_project 1 135675001 135718717 + MGP_CASTEiJ_P0021466 Chit1 protein_coding protein_coding MGP_CASTEiJ_T0021467.1 MGP_CASTEiJ_G0015847.1 mouse_genomes_project 1 135706283 135718716 + MGP_CASTEiJ_P0021467 Chit1 protein_coding protein_coding MGP_CASTEiJ_T0021022.1 MGP_CASTEiJ_G0015751.1 mouse_genomes_project 1 120824289 120888801 + MGP_CASTEiJ_P0021022 Sctr protein_coding protein_coding MGP_CASTEiJ_T0021023.1 MGP_CASTEiJ_G0015751.1 mouse_genomes_project 1 120824427 120888799 + MGP_CASTEiJ_P0021023 Sctr protein_coding protein_coding MGP_CASTEiJ_T0020344.1 MGP_CASTEiJ_G0015604.1 mouse_genomes_project 1 86682261 86734927 + Dis3l2 protein_coding processed_transcript MGP_CASTEiJ_T0020345.1 MGP_CASTEiJ_G0015604.1 mouse_genomes_project 1 86682272 87058035 + MGP_CASTEiJ_P0020345 Dis3l2 protein_coding protein_coding MGP_CASTEiJ_T0020346.1 MGP_CASTEiJ_G0015604.1 mouse_genomes_project 1 86682281 86874637 + Dis3l2 protein_coding retained_intron MGP_CASTEiJ_T0020347.1 MGP_CASTEiJ_G0015604.1 mouse_genomes_project 1 86682281 87057135 + MGP_CASTEiJ_P0020347 Dis3l2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020348.1 MGP_CASTEiJ_G0015604.1 mouse_genomes_project 1 86682296 87058032 + MGP_CASTEiJ_P0020348 Dis3l2 protein_coding protein_coding MGP_CASTEiJ_T0020349.1 MGP_CASTEiJ_G0015604.1 mouse_genomes_project 1 86849619 86850354 + Dis3l2 protein_coding retained_intron MGP_CASTEiJ_T0022066.1 MGP_CASTEiJ_G0015964.1 mouse_genomes_project 1 158896730 158928908 - MGP_CASTEiJ_P0022066 Tor1aip1 protein_coding protein_coding MGP_CASTEiJ_T0022067.1 MGP_CASTEiJ_G0015964.1 mouse_genomes_project 1 158896745 158930428 - MGP_CASTEiJ_P0022067 Tor1aip1 protein_coding protein_coding MGP_CASTEiJ_T0022068.1 MGP_CASTEiJ_G0015964.1 mouse_genomes_project 1 158898894 158930481 - MGP_CASTEiJ_P0022068 Tor1aip1 protein_coding protein_coding MGP_CASTEiJ_T0022069.1 MGP_CASTEiJ_G0015964.1 mouse_genomes_project 1 158899644 158927044 - MGP_CASTEiJ_P0022069 Tor1aip1 protein_coding protein_coding MGP_CASTEiJ_T0022070.1 MGP_CASTEiJ_G0015964.1 mouse_genomes_project 1 158899685 158928971 - MGP_CASTEiJ_P0022070 Tor1aip1 protein_coding protein_coding MGP_CASTEiJ_T0022071.1 MGP_CASTEiJ_G0015964.1 mouse_genomes_project 1 158899685 158930481 - MGP_CASTEiJ_P0022071 Tor1aip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022072.1 MGP_CASTEiJ_G0015964.1 mouse_genomes_project 1 158909456 158910736 - Tor1aip1 protein_coding retained_intron MGP_CASTEiJ_T0022073.1 MGP_CASTEiJ_G0015964.1 mouse_genomes_project 1 158910350 158930236 - MGP_CASTEiJ_P0022073 Tor1aip1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022074.1 MGP_CASTEiJ_G0015964.1 mouse_genomes_project 1 158915605 158930051 - MGP_CASTEiJ_P0022074 Tor1aip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022075.1 MGP_CASTEiJ_G0015964.1 mouse_genomes_project 1 158924321 158930148 - Tor1aip1 protein_coding retained_intron MGP_CASTEiJ_T0011725.1 MGP_CASTEiJ_G0009888.1 mouse_genomes_project 1 56139887 56140864 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000498.1 MGP_CASTEiJ_G0000444.1 mouse_genomes_project 1 80592846 80594672 - TEC TEC MGP_CASTEiJ_T0019767.1 MGP_CASTEiJ_G0015502.1 mouse_genomes_project 1 74010225 74023825 + MGP_CASTEiJ_P0019767 Slc11a1 protein_coding protein_coding MGP_CASTEiJ_T0019768.1 MGP_CASTEiJ_G0015502.1 mouse_genomes_project 1 74010233 74024114 + Slc11a1 protein_coding retained_intron MGP_CASTEiJ_T0019769.1 MGP_CASTEiJ_G0015502.1 mouse_genomes_project 1 74010255 74024113 + Slc11a1 protein_coding retained_intron MGP_CASTEiJ_T0019770.1 MGP_CASTEiJ_G0015502.1 mouse_genomes_project 1 74010283 74019637 + Slc11a1 protein_coding processed_transcript MGP_CASTEiJ_T0019771.1 MGP_CASTEiJ_G0015502.1 mouse_genomes_project 1 74010345 74030576 + MGP_CASTEiJ_P0019771 Slc11a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0019772.1 MGP_CASTEiJ_G0015502.1 mouse_genomes_project 1 74010602 74011921 + Slc11a1 protein_coding processed_transcript MGP_CASTEiJ_T0019773.1 MGP_CASTEiJ_G0015502.1 mouse_genomes_project 1 74011687 74016612 + Slc11a1 protein_coding processed_transcript MGP_CASTEiJ_T0019774.1 MGP_CASTEiJ_G0015502.1 mouse_genomes_project 1 74019461 74022078 + Slc11a1 protein_coding retained_intron MGP_CASTEiJ_T0019775.1 MGP_CASTEiJ_G0015502.1 mouse_genomes_project 1 74020942 74021739 + Slc11a1 protein_coding retained_intron MGP_CASTEiJ_T0019776.1 MGP_CASTEiJ_G0015502.1 mouse_genomes_project 1 74021249 74022078 + Slc11a1 protein_coding processed_transcript MGP_CASTEiJ_T0019777.1 MGP_CASTEiJ_G0015502.1 mouse_genomes_project 1 74021507 74023268 + Slc11a1 protein_coding processed_transcript MGP_CASTEiJ_T0000713.1 MGP_CASTEiJ_G0000657.1 mouse_genomes_project 1 180984048 180985995 + TEC TEC MGP_CASTEiJ_T0011857.1 MGP_CASTEiJ_G0010020.1 mouse_genomes_project 1 112844747 112845308 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002699.1 MGP_CASTEiJ_G0002573.1 mouse_genomes_project 1 43386745 43393598 - 4930521E06Rik antisense antisense MGP_CASTEiJ_T0009310.1 MGP_CASTEiJ_G0007498.1 mouse_genomes_project 1 177324395 177324463 + Gm44339 miRNA miRNA MGP_CASTEiJ_T0022682.1 MGP_CASTEiJ_G0016090.1 mouse_genomes_project 1 174750268 174755144 + MGP_CASTEiJ_P0022682 Nr1i3 protein_coding protein_coding MGP_CASTEiJ_T0022683.1 MGP_CASTEiJ_G0016090.1 mouse_genomes_project 1 174750269 174755142 + MGP_CASTEiJ_P0022683 Nr1i3 protein_coding protein_coding MGP_CASTEiJ_T0022684.1 MGP_CASTEiJ_G0016090.1 mouse_genomes_project 1 174750284 174757000 + MGP_CASTEiJ_P0022684 Nr1i3 protein_coding protein_coding MGP_CASTEiJ_T0022685.1 MGP_CASTEiJ_G0016090.1 mouse_genomes_project 1 174750292 174755300 + Nr1i3 protein_coding retained_intron MGP_CASTEiJ_T0022686.1 MGP_CASTEiJ_G0016090.1 mouse_genomes_project 1 174750300 174755144 + MGP_CASTEiJ_P0022686 Nr1i3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022687.1 MGP_CASTEiJ_G0016090.1 mouse_genomes_project 1 174750319 174755492 + Nr1i3 protein_coding retained_intron MGP_CASTEiJ_T0022688.1 MGP_CASTEiJ_G0016090.1 mouse_genomes_project 1 174750319 174755143 + MGP_CASTEiJ_P0022688 Nr1i3 protein_coding protein_coding MGP_CASTEiJ_T0022689.1 MGP_CASTEiJ_G0016090.1 mouse_genomes_project 1 174750647 174755017 + Nr1i3 protein_coding retained_intron MGP_CASTEiJ_T0000724.1 MGP_CASTEiJ_G0000667.1 mouse_genomes_project 1 184284898 184287437 + TEC TEC MGP_CASTEiJ_T0018326.1 MGP_CASTEiJ_G0015222.1 mouse_genomes_project 1 18284207 18287803 + MGP_CASTEiJ_P0018326 Il17a protein_coding protein_coding MGP_CASTEiJ_T0005800.1 MGP_CASTEiJ_G0004873.1 mouse_genomes_project 1 163942978 163945052 + Gm37083 lincRNA lincRNA MGP_CASTEiJ_T0005842.1 MGP_CASTEiJ_G0004909.1 mouse_genomes_project 1 185096683 185106101 - lincRNA lincRNA MGP_CASTEiJ_T0020096.1 MGP_CASTEiJ_G0015553.1 mouse_genomes_project 1 78287347 78311245 + MGP_CASTEiJ_P0020096 Mogat1 protein_coding protein_coding MGP_CASTEiJ_T0020097.1 MGP_CASTEiJ_G0015553.1 mouse_genomes_project 1 78287516 78312785 + MGP_CASTEiJ_P0020097 Mogat1 protein_coding protein_coding MGP_CASTEiJ_T0020098.1 MGP_CASTEiJ_G0015553.1 mouse_genomes_project 1 78287525 78322803 + MGP_CASTEiJ_P0020098 Mogat1 protein_coding protein_coding MGP_CASTEiJ_T0020099.1 MGP_CASTEiJ_G0015553.1 mouse_genomes_project 1 78288169 78306403 + MGP_CASTEiJ_P0020099 Mogat1 protein_coding protein_coding MGP_CASTEiJ_T0020100.1 MGP_CASTEiJ_G0015553.1 mouse_genomes_project 1 78288224 78322805 + MGP_CASTEiJ_P0020100 Mogat1 protein_coding protein_coding MGP_CASTEiJ_T0020101.1 MGP_CASTEiJ_G0015553.1 mouse_genomes_project 1 78322259 78322805 + Mogat1 protein_coding processed_transcript MGP_CASTEiJ_T0005821.1 MGP_CASTEiJ_G0004890.1 mouse_genomes_project 1 169405596 169405757 + Gm37923 lincRNA lincRNA MGP_CASTEiJ_T0022702.1 MGP_CASTEiJ_G0016093.1 mouse_genomes_project 1 174765846 174770496 - MGP_CASTEiJ_P0022702 Fcer1g protein_coding protein_coding MGP_CASTEiJ_T0022703.1 MGP_CASTEiJ_G0016093.1 mouse_genomes_project 1 174765853 174770438 - MGP_CASTEiJ_P0022703 Fcer1g protein_coding protein_coding MGP_CASTEiJ_T0022704.1 MGP_CASTEiJ_G0016093.1 mouse_genomes_project 1 174767325 174770470 - Fcer1g protein_coding retained_intron MGP_CASTEiJ_T0023376.1 MGP_CASTEiJ_G0016258.1 mouse_genomes_project 1 189878680 189925572 - MGP_CASTEiJ_P0023376 Iars2 protein_coding protein_coding MGP_CASTEiJ_T0023377.1 MGP_CASTEiJ_G0016258.1 mouse_genomes_project 1 189879519 189882198 - Iars2 protein_coding processed_transcript MGP_CASTEiJ_T0023378.1 MGP_CASTEiJ_G0016258.1 mouse_genomes_project 1 189890104 189925572 - MGP_CASTEiJ_P0023378 Iars2 protein_coding protein_coding MGP_CASTEiJ_T0023379.1 MGP_CASTEiJ_G0016258.1 mouse_genomes_project 1 189906592 189925572 - MGP_CASTEiJ_P0023379 Iars2 protein_coding protein_coding MGP_CASTEiJ_T0023380.1 MGP_CASTEiJ_G0016258.1 mouse_genomes_project 1 189917156 189925572 - Iars2 protein_coding retained_intron MGP_CASTEiJ_T0018429.1 MGP_CASTEiJ_G0015246.1 mouse_genomes_project 1 28855566 28865039 - MGP_CASTEiJ_P0018429 Ptp4a1 protein_coding protein_coding MGP_CASTEiJ_T0018430.1 MGP_CASTEiJ_G0015246.1 mouse_genomes_project 1 28858479 28859560 - Ptp4a1 protein_coding retained_intron MGP_CASTEiJ_T0018431.1 MGP_CASTEiJ_G0015246.1 mouse_genomes_project 1 28861418 28864579 - Ptp4a1 protein_coding processed_transcript MGP_CASTEiJ_T0018432.1 MGP_CASTEiJ_G0015246.1 mouse_genomes_project 1 28861790 28864856 - MGP_CASTEiJ_P0018432 Ptp4a1 protein_coding protein_coding MGP_CASTEiJ_T0000410.1 MGP_CASTEiJ_G0000356.1 mouse_genomes_project 1 34163614 34165523 - TEC TEC MGP_CASTEiJ_T0000647.1 MGP_CASTEiJ_G0000591.1 mouse_genomes_project 1 154962863 154963220 - TEC TEC MGP_CASTEiJ_T0002754.1 MGP_CASTEiJ_G0002615.1 mouse_genomes_project 1 93392265 93394634 - 5033417F24Rik antisense antisense MGP_CASTEiJ_T0009270.1 MGP_CASTEiJ_G0007458.1 mouse_genomes_project 1 86306287 86306434 - Mir3535 miRNA miRNA MGP_CASTEiJ_T0000349.1 MGP_CASTEiJ_G0000298.1 mouse_genomes_project 1 10757035 10763128 - TEC TEC MGP_CASTEiJ_T0018022.1 MGP_CASTEiJ_G0015166.1 mouse_genomes_project 1 2170301 2349691 - MGP_CASTEiJ_P0018022 Rgs20 protein_coding protein_coding MGP_CASTEiJ_T0018023.1 MGP_CASTEiJ_G0015166.1 mouse_genomes_project 1 2172100 2297341 - MGP_CASTEiJ_P0018023 Rgs20 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018024.1 MGP_CASTEiJ_G0015166.1 mouse_genomes_project 1 2172100 2297341 - MGP_CASTEiJ_P0018024 Rgs20 protein_coding protein_coding MGP_CASTEiJ_T0018025.1 MGP_CASTEiJ_G0015166.1 mouse_genomes_project 1 2173968 2349688 - MGP_CASTEiJ_P0018025 Rgs20 protein_coding protein_coding MGP_CASTEiJ_T0018026.1 MGP_CASTEiJ_G0015166.1 mouse_genomes_project 1 2186211 2297341 - Rgs20 protein_coding retained_intron MGP_CASTEiJ_T0018027.1 MGP_CASTEiJ_G0015166.1 mouse_genomes_project 1 2340959 2349679 - Rgs20 protein_coding processed_transcript MGP_CASTEiJ_T0011651.1 MGP_CASTEiJ_G0009814.1 mouse_genomes_project 1 32729850 32730496 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018295.1 MGP_CASTEiJ_G0015211.1 mouse_genomes_project 1 14159354 14163764 + Ly96 protein_coding retained_intron MGP_CASTEiJ_T0018296.1 MGP_CASTEiJ_G0015211.1 mouse_genomes_project 1 14159737 14185058 + MGP_CASTEiJ_P0018296 Ly96 protein_coding protein_coding MGP_CASTEiJ_T0018297.1 MGP_CASTEiJ_G0015211.1 mouse_genomes_project 1 14159812 14184961 + MGP_CASTEiJ_P0018297 Ly96 protein_coding protein_coding MGP_CASTEiJ_T0002744.1 MGP_CASTEiJ_G0002605.1 mouse_genomes_project 1 86249810 86250677 - Gm28626 antisense antisense MGP_CASTEiJ_T0011982.1 MGP_CASTEiJ_G0010145.1 mouse_genomes_project 1 169362127 169362485 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020882.1 MGP_CASTEiJ_G0015719.1 mouse_genomes_project 1 106762375 106990479 + MGP_CASTEiJ_P0020882 Phlpp1 protein_coding protein_coding MGP_CASTEiJ_T0020883.1 MGP_CASTEiJ_G0015719.1 mouse_genomes_project 1 106877574 106883571 + Phlpp1 protein_coding retained_intron MGP_CASTEiJ_T0020884.1 MGP_CASTEiJ_G0015719.1 mouse_genomes_project 1 106906417 106908169 + Phlpp1 protein_coding processed_transcript MGP_CASTEiJ_T0019550.1 MGP_CASTEiJ_G0015461.1 mouse_genomes_project 1 64361594 64382002 - MGP_CASTEiJ_P0019550 Idh1 protein_coding protein_coding MGP_CASTEiJ_T0019551.1 MGP_CASTEiJ_G0015461.1 mouse_genomes_project 1 64361596 64389975 - MGP_CASTEiJ_P0019551 Idh1 protein_coding protein_coding MGP_CASTEiJ_T0019552.1 MGP_CASTEiJ_G0015461.1 mouse_genomes_project 1 64369151 64389934 - MGP_CASTEiJ_P0019552 Idh1 protein_coding protein_coding MGP_CASTEiJ_T0019553.1 MGP_CASTEiJ_G0015461.1 mouse_genomes_project 1 64369196 64389996 - MGP_CASTEiJ_P0019553 Idh1 protein_coding protein_coding MGP_CASTEiJ_T0019554.1 MGP_CASTEiJ_G0015461.1 mouse_genomes_project 1 64371540 64378343 - MGP_CASTEiJ_P0019554 Idh1 protein_coding protein_coding MGP_CASTEiJ_T0019555.1 MGP_CASTEiJ_G0015461.1 mouse_genomes_project 1 64374071 64389955 - MGP_CASTEiJ_P0019555 Idh1 protein_coding protein_coding MGP_CASTEiJ_T0019556.1 MGP_CASTEiJ_G0015461.1 mouse_genomes_project 1 64378074 64389975 - MGP_CASTEiJ_P0019556 Idh1 protein_coding protein_coding MGP_CASTEiJ_T0018449.1 MGP_CASTEiJ_G0015254.1 mouse_genomes_project 1 31724639 31728413 + Rab23 protein_coding processed_transcript MGP_CASTEiJ_T0018450.1 MGP_CASTEiJ_G0015254.1 mouse_genomes_project 1 31724639 31731467 + Rab23 protein_coding retained_intron MGP_CASTEiJ_T0018451.1 MGP_CASTEiJ_G0015254.1 mouse_genomes_project 1 31724647 31748042 + MGP_CASTEiJ_P0018451 Rab23 protein_coding protein_coding MGP_CASTEiJ_T0018452.1 MGP_CASTEiJ_G0015254.1 mouse_genomes_project 1 31724661 31748035 + MGP_CASTEiJ_P0018452 Rab23 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018453.1 MGP_CASTEiJ_G0015254.1 mouse_genomes_project 1 31724662 31730052 + Rab23 protein_coding retained_intron MGP_CASTEiJ_T0018454.1 MGP_CASTEiJ_G0015254.1 mouse_genomes_project 1 31724890 31740914 + Rab23 protein_coding retained_intron MGP_CASTEiJ_T0018455.1 MGP_CASTEiJ_G0015254.1 mouse_genomes_project 1 31725174 31748039 + MGP_CASTEiJ_P0018455 Rab23 protein_coding protein_coding MGP_CASTEiJ_T0018456.1 MGP_CASTEiJ_G0015254.1 mouse_genomes_project 1 31740092 31746195 + Rab23 protein_coding retained_intron MGP_CASTEiJ_T0018457.1 MGP_CASTEiJ_G0015254.1 mouse_genomes_project 1 31742126 31744872 + Rab23 protein_coding retained_intron MGP_CASTEiJ_T0018458.1 MGP_CASTEiJ_G0015254.1 mouse_genomes_project 1 31743609 31746256 + Rab23 protein_coding retained_intron MGP_CASTEiJ_T0011979.1 MGP_CASTEiJ_G0010142.1 mouse_genomes_project 1 168928383 168929215 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022138.1 MGP_CASTEiJ_G0015975.1 mouse_genomes_project 1 159737052 159758891 + MGP_CASTEiJ_P0022138 Angptl1 protein_coding protein_coding MGP_CASTEiJ_T0022139.1 MGP_CASTEiJ_G0015975.1 mouse_genomes_project 1 159737413 159744082 + MGP_CASTEiJ_P0022139 Angptl1 protein_coding protein_coding MGP_CASTEiJ_T0011796.1 MGP_CASTEiJ_G0009959.1 mouse_genomes_project 1 82999325 82999965 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011974.1 MGP_CASTEiJ_G0010137.1 mouse_genomes_project 1 167291849 167292238 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000704.1 MGP_CASTEiJ_G0000648.1 mouse_genomes_project 1 176198692 176200251 + TEC TEC MGP_CASTEiJ_T0100272.1 MGP_CASTEiJ_G0037185.1 mouse_genomes_project 1 51836293 51836394 + Gm24349 snoRNA snoRNA MGP_CASTEiJ_T0020796.1 MGP_CASTEiJ_G0015701.1 mouse_genomes_project 1 94570760 94575746 + MGP_CASTEiJ_P0020796 Neu4 protein_coding protein_coding MGP_CASTEiJ_T0020797.1 MGP_CASTEiJ_G0015701.1 mouse_genomes_project 1 94570802 94578649 + MGP_CASTEiJ_P0020797 Neu4 protein_coding protein_coding MGP_CASTEiJ_T0018657.1 MGP_CASTEiJ_G0015288.1 mouse_genomes_project 1 35494883 35545376 + Inpp4a protein_coding processed_transcript MGP_CASTEiJ_T0018658.1 MGP_CASTEiJ_G0015288.1 mouse_genomes_project 1 35494909 35609798 + MGP_CASTEiJ_P0018658 Inpp4a protein_coding protein_coding MGP_CASTEiJ_T0018659.1 MGP_CASTEiJ_G0015288.1 mouse_genomes_project 1 35494911 35497785 + Inpp4a protein_coding retained_intron MGP_CASTEiJ_T0018660.1 MGP_CASTEiJ_G0015288.1 mouse_genomes_project 1 35494933 35598666 + MGP_CASTEiJ_P0018660 Inpp4a protein_coding protein_coding MGP_CASTEiJ_T0018661.1 MGP_CASTEiJ_G0015288.1 mouse_genomes_project 1 35495326 35607398 + MGP_CASTEiJ_P0018661 Inpp4a protein_coding protein_coding MGP_CASTEiJ_T0018662.1 MGP_CASTEiJ_G0015288.1 mouse_genomes_project 1 35495326 35607842 + MGP_CASTEiJ_P0018662 Inpp4a protein_coding protein_coding MGP_CASTEiJ_T0018663.1 MGP_CASTEiJ_G0015288.1 mouse_genomes_project 1 35555358 35602797 + MGP_CASTEiJ_P0018663 Inpp4a protein_coding protein_coding MGP_CASTEiJ_T0018664.1 MGP_CASTEiJ_G0015288.1 mouse_genomes_project 1 35555358 35607578 + MGP_CASTEiJ_P0018664 Inpp4a protein_coding protein_coding MGP_CASTEiJ_T0018665.1 MGP_CASTEiJ_G0015288.1 mouse_genomes_project 1 35555880 35607368 + MGP_CASTEiJ_P0018665 Inpp4a protein_coding protein_coding MGP_CASTEiJ_T0018666.1 MGP_CASTEiJ_G0015288.1 mouse_genomes_project 1 35567141 35603541 + MGP_CASTEiJ_P0018666 Inpp4a protein_coding protein_coding MGP_CASTEiJ_T0018667.1 MGP_CASTEiJ_G0015288.1 mouse_genomes_project 1 35567141 35603549 + MGP_CASTEiJ_P0018667 Inpp4a protein_coding protein_coding MGP_CASTEiJ_T0018668.1 MGP_CASTEiJ_G0015288.1 mouse_genomes_project 1 35567145 35603546 + MGP_CASTEiJ_P0018668 Inpp4a protein_coding protein_coding MGP_CASTEiJ_T0018669.1 MGP_CASTEiJ_G0015288.1 mouse_genomes_project 1 35577005 35579409 + Inpp4a protein_coding retained_intron MGP_CASTEiJ_T0009283.1 MGP_CASTEiJ_G0007471.1 mouse_genomes_project 1 129414632 129414702 + Mir128-1 miRNA miRNA MGP_CASTEiJ_T0002749.1 MGP_CASTEiJ_G0002610.1 mouse_genomes_project 1 91722096 91739667 - Gm17090 antisense antisense MGP_CASTEiJ_T0018439.1 MGP_CASTEiJ_G0015249.1 mouse_genomes_project 1 29154254 29156755 + MGP_CASTEiJ_P0018439 Pih1d3 protein_coding protein_coding MGP_CASTEiJ_T0018714.1 MGP_CASTEiJ_G0015297.1 mouse_genomes_project 1 36126178 36137407 - MGP_CASTEiJ_P0018714 Lyg2 protein_coding protein_coding MGP_CASTEiJ_T0100339.1 MGP_CASTEiJ_G0037252.1 mouse_genomes_project 1 176640966 176641089 - Gm26077 snoRNA snoRNA MGP_CASTEiJ_T0020648.1 MGP_CASTEiJ_G0015674.1 mouse_genomes_project 1 93108284 93112910 - MGP_CASTEiJ_P0020648 Otos protein_coding protein_coding MGP_CASTEiJ_T0020649.1 MGP_CASTEiJ_G0015674.1 mouse_genomes_project 1 93108285 93112323 - Otos protein_coding retained_intron MGP_CASTEiJ_T0019924.1 MGP_CASTEiJ_G0015530.1 mouse_genomes_project 1 74819185 74820058 - Glb1l protein_coding processed_transcript MGP_CASTEiJ_T0019925.1 MGP_CASTEiJ_G0015530.1 mouse_genomes_project 1 74819192 74833782 - MGP_CASTEiJ_P0019925 Glb1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019926.1 MGP_CASTEiJ_G0015530.1 mouse_genomes_project 1 74820040 74822088 - Glb1l protein_coding retained_intron MGP_CASTEiJ_T0019927.1 MGP_CASTEiJ_G0015530.1 mouse_genomes_project 1 74820296 74833782 - MGP_CASTEiJ_P0019927 Glb1l protein_coding protein_coding MGP_CASTEiJ_T0019928.1 MGP_CASTEiJ_G0015530.1 mouse_genomes_project 1 74820440 74832407 - MGP_CASTEiJ_P0019928 Glb1l protein_coding protein_coding MGP_CASTEiJ_T0019929.1 MGP_CASTEiJ_G0015530.1 mouse_genomes_project 1 74820440 74823811 - MGP_CASTEiJ_P0019929 Glb1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019930.1 MGP_CASTEiJ_G0015530.1 mouse_genomes_project 1 74820778 74832478 - Glb1l protein_coding retained_intron MGP_CASTEiJ_T0019931.1 MGP_CASTEiJ_G0015530.1 mouse_genomes_project 1 74821042 74822164 - Glb1l protein_coding retained_intron MGP_CASTEiJ_T0019932.1 MGP_CASTEiJ_G0015530.1 mouse_genomes_project 1 74821867 74823217 - Glb1l protein_coding retained_intron MGP_CASTEiJ_T0019933.1 MGP_CASTEiJ_G0015530.1 mouse_genomes_project 1 74822121 74822739 - Glb1l protein_coding retained_intron MGP_CASTEiJ_T0019934.1 MGP_CASTEiJ_G0015530.1 mouse_genomes_project 1 74823639 74833817 - MGP_CASTEiJ_P0019934 Glb1l protein_coding protein_coding MGP_CASTEiJ_T0019935.1 MGP_CASTEiJ_G0015530.1 mouse_genomes_project 1 74829595 74833757 - Glb1l protein_coding retained_intron MGP_CASTEiJ_T0005825.1 MGP_CASTEiJ_G0004894.1 mouse_genomes_project 1 170641970 170642668 + Gm2453 lincRNA lincRNA MGP_CASTEiJ_T0005826.1 MGP_CASTEiJ_G0004894.1 mouse_genomes_project 1 170642385 170647876 + Gm2453 lincRNA lincRNA MGP_CASTEiJ_T0020064.1 MGP_CASTEiJ_G0015547.1 mouse_genomes_project 1 75187522 75203410 + MGP_CASTEiJ_P0020064 Slc4a3 protein_coding protein_coding MGP_CASTEiJ_T0020065.1 MGP_CASTEiJ_G0015547.1 mouse_genomes_project 1 75187548 75188759 + Slc4a3 protein_coding retained_intron MGP_CASTEiJ_T0020066.1 MGP_CASTEiJ_G0015547.1 mouse_genomes_project 1 75187714 75189290 + MGP_CASTEiJ_P0020066 Slc4a3 protein_coding protein_coding MGP_CASTEiJ_T0020067.1 MGP_CASTEiJ_G0015547.1 mouse_genomes_project 1 75187748 75200119 + MGP_CASTEiJ_P0020067 Slc4a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020068.1 MGP_CASTEiJ_G0015547.1 mouse_genomes_project 1 75187779 75188996 + Slc4a3 protein_coding retained_intron MGP_CASTEiJ_T0020069.1 MGP_CASTEiJ_G0015547.1 mouse_genomes_project 1 75187785 75189263 + MGP_CASTEiJ_P0020069 Slc4a3 protein_coding protein_coding MGP_CASTEiJ_T0020070.1 MGP_CASTEiJ_G0015547.1 mouse_genomes_project 1 75187896 75202117 + Slc4a3 protein_coding retained_intron MGP_CASTEiJ_T0020071.1 MGP_CASTEiJ_G0015547.1 mouse_genomes_project 1 75187908 75188786 + Slc4a3 protein_coding retained_intron MGP_CASTEiJ_T0020072.1 MGP_CASTEiJ_G0015547.1 mouse_genomes_project 1 75190850 75192631 + MGP_CASTEiJ_P0020072 Slc4a3 protein_coding protein_coding MGP_CASTEiJ_T0020073.1 MGP_CASTEiJ_G0015547.1 mouse_genomes_project 1 75191016 75192378 + Slc4a3 protein_coding retained_intron MGP_CASTEiJ_T0020074.1 MGP_CASTEiJ_G0015547.1 mouse_genomes_project 1 75191843 75196365 + MGP_CASTEiJ_P0020074 Slc4a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020075.1 MGP_CASTEiJ_G0015547.1 mouse_genomes_project 1 75192957 75194980 + MGP_CASTEiJ_P0020075 Slc4a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022869.1 MGP_CASTEiJ_G0016126.1 mouse_genomes_project 1 175889778 175930353 - MGP_CASTEiJ_P0022869 Atp1a4 protein_coding protein_coding MGP_CASTEiJ_T0022870.1 MGP_CASTEiJ_G0016126.1 mouse_genomes_project 1 175917034 175925901 - Atp1a4 protein_coding processed_transcript MGP_CASTEiJ_T0016311.1 MGP_CASTEiJ_G0014428.1 mouse_genomes_project 1 138128065 138131672 - 9230116N13Rik processed_transcript antisense MGP_CASTEiJ_T0016312.1 MGP_CASTEiJ_G0014428.1 mouse_genomes_project 1 138128992 138131647 - 9230116N13Rik processed_transcript retained_intron MGP_CASTEiJ_T0101932.1 MGP_CASTEiJ_G0038657.1 mouse_genomes_project 1 118806644 118892367 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011735.1 MGP_CASTEiJ_G0009898.1 mouse_genomes_project 1 59565111 59565528 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019873.1 MGP_CASTEiJ_G0015523.1 mouse_genomes_project 1 74740859 74750638 - MGP_CASTEiJ_P0019873 Slc23a3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0019874.1 MGP_CASTEiJ_G0015523.1 mouse_genomes_project 1 74740862 74751143 - MGP_CASTEiJ_P0019874 Slc23a3 protein_coding protein_coding MGP_CASTEiJ_T0019875.1 MGP_CASTEiJ_G0015523.1 mouse_genomes_project 1 74748963 74750799 - Slc23a3 protein_coding retained_intron MGP_CASTEiJ_T0011591.1 MGP_CASTEiJ_G0009754.1 mouse_genomes_project 1 10455165 10455486 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101905.1 MGP_CASTEiJ_G0038630.1 mouse_genomes_project 1 18913967 18918812 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011970.1 MGP_CASTEiJ_G0010133.1 mouse_genomes_project 1 165040440 165041644 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009302.1 MGP_CASTEiJ_G0007490.1 mouse_genomes_project 1 167901875 167901971 - Mir682 miRNA miRNA MGP_CASTEiJ_T0022932.1 MGP_CASTEiJ_G0016147.1 mouse_genomes_project 1 176939123 176945054 - MGP_CASTEiJ_P0022932 Fcer1a protein_coding protein_coding MGP_CASTEiJ_T0022933.1 MGP_CASTEiJ_G0016147.1 mouse_genomes_project 1 176939232 176945034 - MGP_CASTEiJ_P0022933 Fcer1a protein_coding protein_coding MGP_CASTEiJ_T0005608.1 MGP_CASTEiJ_G0004719.1 mouse_genomes_project 1 63211356 63214817 + Gm26649 lincRNA lincRNA MGP_CASTEiJ_T0000717.1 MGP_CASTEiJ_G0000661.1 mouse_genomes_project 1 181163143 181164437 - TEC TEC MGP_CASTEiJ_T0021985.1 MGP_CASTEiJ_G0015948.1 mouse_genomes_project 1 156566224 156600482 - MGP_CASTEiJ_P0021985 Rgsl1 protein_coding protein_coding MGP_CASTEiJ_T0021986.1 MGP_CASTEiJ_G0015948.1 mouse_genomes_project 1 156566229 156638954 - MGP_CASTEiJ_P0021986 Rgsl1 protein_coding protein_coding MGP_CASTEiJ_T0021987.1 MGP_CASTEiJ_G0015948.1 mouse_genomes_project 1 156566235 156618614 - MGP_CASTEiJ_P0021987 Rgsl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021988.1 MGP_CASTEiJ_G0015948.1 mouse_genomes_project 1 156568457 156577464 - Rgsl1 protein_coding processed_transcript MGP_CASTEiJ_T0021989.1 MGP_CASTEiJ_G0015948.1 mouse_genomes_project 1 156571904 156638946 - MGP_CASTEiJ_P0021989 Rgsl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021990.1 MGP_CASTEiJ_G0015948.1 mouse_genomes_project 1 156580195 156614961 - Rgsl1 protein_coding retained_intron MGP_CASTEiJ_T0021991.1 MGP_CASTEiJ_G0015948.1 mouse_genomes_project 1 156590463 156606179 - Rgsl1 protein_coding processed_transcript MGP_CASTEiJ_T0002666.1 MGP_CASTEiJ_G0002546.1 mouse_genomes_project 1 15204385 15273073 - Gm28153 antisense antisense MGP_CASTEiJ_T0005507.1 MGP_CASTEiJ_G0004644.1 mouse_genomes_project 1 14616514 14621219 + Gm28784 lincRNA lincRNA MGP_CASTEiJ_T0011912.1 MGP_CASTEiJ_G0010075.1 mouse_genomes_project 1 140573549 140573871 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016352.1 MGP_CASTEiJ_G0014439.1 mouse_genomes_project 1 175320199 175325446 - A630035G10Rik processed_transcript lincRNA MGP_CASTEiJ_T0016353.1 MGP_CASTEiJ_G0014439.1 mouse_genomes_project 1 175323631 175325494 - A630035G10Rik processed_transcript retained_intron MGP_CASTEiJ_T0021723.1 MGP_CASTEiJ_G0015899.1 mouse_genomes_project 1 140846534 140951771 + MGP_CASTEiJ_P0021723 Dennd1b protein_coding protein_coding MGP_CASTEiJ_T0021724.1 MGP_CASTEiJ_G0015899.1 mouse_genomes_project 1 140846808 141071844 + MGP_CASTEiJ_P0021724 Dennd1b protein_coding protein_coding MGP_CASTEiJ_T0021725.1 MGP_CASTEiJ_G0015899.1 mouse_genomes_project 1 140846827 140974264 + MGP_CASTEiJ_P0021725 Dennd1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021726.1 MGP_CASTEiJ_G0015899.1 mouse_genomes_project 1 140846968 141074779 + MGP_CASTEiJ_P0021726 Dennd1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021727.1 MGP_CASTEiJ_G0015899.1 mouse_genomes_project 1 140852082 141071844 + MGP_CASTEiJ_P0021727 Dennd1b protein_coding protein_coding MGP_CASTEiJ_T0021728.1 MGP_CASTEiJ_G0015899.1 mouse_genomes_project 1 140942345 140945152 + Dennd1b protein_coding retained_intron MGP_CASTEiJ_T0021729.1 MGP_CASTEiJ_G0015899.1 mouse_genomes_project 1 140974259 141022857 + Dennd1b protein_coding retained_intron MGP_CASTEiJ_T0021730.1 MGP_CASTEiJ_G0015899.1 mouse_genomes_project 1 141012672 141071784 + Dennd1b protein_coding processed_transcript MGP_CASTEiJ_T0021731.1 MGP_CASTEiJ_G0015899.1 mouse_genomes_project 1 141020201 141069895 + Dennd1b protein_coding processed_transcript MGP_CASTEiJ_T0101903.1 MGP_CASTEiJ_G0038628.1 mouse_genomes_project 1 15720444 15736800 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0022964.1 MGP_CASTEiJ_G0016163.1 mouse_genomes_project 1 177996329 177997283 + MGP_CASTEiJ_P0022964 Olfr430 protein_coding protein_coding MGP_CASTEiJ_T0019385.1 MGP_CASTEiJ_G0015426.1 mouse_genomes_project 1 59093058 59157814 + MGP_CASTEiJ_P0019385 Carf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019386.1 MGP_CASTEiJ_G0015426.1 mouse_genomes_project 1 59093075 59103629 + Carf protein_coding retained_intron MGP_CASTEiJ_T0019387.1 MGP_CASTEiJ_G0015426.1 mouse_genomes_project 1 59093075 59128272 + MGP_CASTEiJ_P0019387 Carf protein_coding protein_coding MGP_CASTEiJ_T0019388.1 MGP_CASTEiJ_G0015426.1 mouse_genomes_project 1 59095802 59099061 + Carf protein_coding retained_intron MGP_CASTEiJ_T0019389.1 MGP_CASTEiJ_G0015426.1 mouse_genomes_project 1 59096425 59157469 + MGP_CASTEiJ_P0019389 Carf protein_coding unknown_likely_coding MGP_CASTEiJ_T0019390.1 MGP_CASTEiJ_G0015426.1 mouse_genomes_project 1 59102669 59157582 + MGP_CASTEiJ_P0019390 Carf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019391.1 MGP_CASTEiJ_G0015426.1 mouse_genomes_project 1 59102669 59157582 + MGP_CASTEiJ_P0019391 Carf protein_coding protein_coding MGP_CASTEiJ_T0019392.1 MGP_CASTEiJ_G0015426.1 mouse_genomes_project 1 59144695 59147105 + Carf protein_coding retained_intron MGP_CASTEiJ_T0019393.1 MGP_CASTEiJ_G0015426.1 mouse_genomes_project 1 59146339 59154802 + MGP_CASTEiJ_P0019393 Carf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011991.1 MGP_CASTEiJ_G0010154.1 mouse_genomes_project 1 174886771 174886931 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018330.1 MGP_CASTEiJ_G0015224.1 mouse_genomes_project 1 18360825 18379527 - MGP_CASTEiJ_P0018330 Mcm3 protein_coding protein_coding MGP_CASTEiJ_T0018331.1 MGP_CASTEiJ_G0015224.1 mouse_genomes_project 1 18360830 18379475 - Mcm3 protein_coding retained_intron MGP_CASTEiJ_T0018332.1 MGP_CASTEiJ_G0015224.1 mouse_genomes_project 1 18360863 18361578 - Mcm3 protein_coding retained_intron MGP_CASTEiJ_T0018333.1 MGP_CASTEiJ_G0015224.1 mouse_genomes_project 1 18361022 18362787 - Mcm3 protein_coding retained_intron MGP_CASTEiJ_T0018334.1 MGP_CASTEiJ_G0015224.1 mouse_genomes_project 1 18362539 18363792 - Mcm3 protein_coding retained_intron MGP_CASTEiJ_T0000315.1 MGP_CASTEiJ_G0000264.1 mouse_genomes_project 1 290216 291285 + TEC TEC MGP_CASTEiJ_T0000324.1 MGP_CASTEiJ_G0000273.1 mouse_genomes_project 1 2023028 2026749 - TEC TEC MGP_CASTEiJ_T0011636.1 MGP_CASTEiJ_G0009799.1 mouse_genomes_project 1 29704047 29704891 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000751.1 MGP_CASTEiJ_G0000693.1 mouse_genomes_project 1 192951299 192953666 + TEC TEC MGP_CASTEiJ_T0002785.1 MGP_CASTEiJ_G0002637.1 mouse_genomes_project 1 134186390 134189857 + Gm10538 antisense antisense MGP_CASTEiJ_T0018251.1 MGP_CASTEiJ_G0015205.1 mouse_genomes_project 1 13538000 13538792 - Rpl7 protein_coding processed_transcript MGP_CASTEiJ_T0018252.1 MGP_CASTEiJ_G0015205.1 mouse_genomes_project 1 13538000 13541332 - MGP_CASTEiJ_P0018252 Rpl7 protein_coding protein_coding MGP_CASTEiJ_T0018253.1 MGP_CASTEiJ_G0015205.1 mouse_genomes_project 1 13538011 13541086 - Rpl7 protein_coding retained_intron MGP_CASTEiJ_T0018254.1 MGP_CASTEiJ_G0015205.1 mouse_genomes_project 1 13538236 13539557 - Rpl7 protein_coding retained_intron MGP_CASTEiJ_T0018255.1 MGP_CASTEiJ_G0015205.1 mouse_genomes_project 1 13538490 13540911 - MGP_CASTEiJ_P0018255 Rpl7 protein_coding protein_coding MGP_CASTEiJ_T0018256.1 MGP_CASTEiJ_G0015205.1 mouse_genomes_project 1 13539200 13541068 - Rpl7 protein_coding retained_intron MGP_CASTEiJ_T0000362.1 MGP_CASTEiJ_G0000311.1 mouse_genomes_project 1 17617909 17621333 - TEC TEC MGP_CASTEiJ_T0019157.1 MGP_CASTEiJ_G0015385.1 mouse_genomes_project 1 53943552 54010454 - MGP_CASTEiJ_P0019157 Rftn2 protein_coding protein_coding MGP_CASTEiJ_T0019158.1 MGP_CASTEiJ_G0015385.1 mouse_genomes_project 1 53945139 54010454 - MGP_CASTEiJ_P0019158 Rftn2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019159.1 MGP_CASTEiJ_G0015385.1 mouse_genomes_project 1 53979065 54010454 - MGP_CASTEiJ_P0019159 Rftn2 protein_coding protein_coding MGP_CASTEiJ_T0019160.1 MGP_CASTEiJ_G0015385.1 mouse_genomes_project 1 53987167 53989698 - Rftn2 protein_coding processed_transcript MGP_CASTEiJ_T0019161.1 MGP_CASTEiJ_G0015385.1 mouse_genomes_project 1 54007613 54010454 - Rftn2 protein_coding processed_transcript MGP_CASTEiJ_T0022638.1 MGP_CASTEiJ_G0016077.1 mouse_genomes_project 1 174136059 174174150 + MGP_CASTEiJ_P0022638 Olfml2b protein_coding protein_coding MGP_CASTEiJ_T0022639.1 MGP_CASTEiJ_G0016077.1 mouse_genomes_project 1 174136343 174173820 + MGP_CASTEiJ_P0022639 Olfml2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0000709.1 MGP_CASTEiJ_G0000653.1 mouse_genomes_project 1 180164259 180166698 + TEC TEC MGP_CASTEiJ_T0002853.1 MGP_CASTEiJ_G0002690.1 mouse_genomes_project 1 175907306 175908306 + Gm37950 antisense antisense MGP_CASTEiJ_T0000371.1 MGP_CASTEiJ_G0000318.1 mouse_genomes_project 1 23015754 23017251 - TEC TEC MGP_CASTEiJ_T0000429.1 MGP_CASTEiJ_G0000375.1 mouse_genomes_project 1 43220423 43224705 + TEC TEC MGP_CASTEiJ_T0000597.1 MGP_CASTEiJ_G0000543.1 mouse_genomes_project 1 134619373 134622482 - TEC TEC MGP_CASTEiJ_T0000598.1 MGP_CASTEiJ_G0000543.1 mouse_genomes_project 1 134621879 134622482 - TEC TEC MGP_CASTEiJ_T0000363.1 MGP_CASTEiJ_G0000312.1 mouse_genomes_project 1 18829297 18831458 + TEC TEC MGP_CASTEiJ_T0018508.1 MGP_CASTEiJ_G0015261.1 mouse_genomes_project 1 32504320 32505614 + Ptpn18 protein_coding retained_intron MGP_CASTEiJ_T0018509.1 MGP_CASTEiJ_G0015261.1 mouse_genomes_project 1 32504323 32520585 + MGP_CASTEiJ_P0018509 Ptpn18 protein_coding protein_coding MGP_CASTEiJ_T0018510.1 MGP_CASTEiJ_G0015261.1 mouse_genomes_project 1 32504335 32518736 + MGP_CASTEiJ_P0018510 Ptpn18 protein_coding protein_coding MGP_CASTEiJ_T0018511.1 MGP_CASTEiJ_G0015261.1 mouse_genomes_project 1 32504350 32518735 + Ptpn18 protein_coding retained_intron MGP_CASTEiJ_T0018512.1 MGP_CASTEiJ_G0015261.1 mouse_genomes_project 1 32507829 32513863 + Ptpn18 protein_coding retained_intron MGP_CASTEiJ_T0018513.1 MGP_CASTEiJ_G0015261.1 mouse_genomes_project 1 32519522 32522528 + MGP_CASTEiJ_P0018513 Ptpn18 protein_coding protein_coding MGP_CASTEiJ_T0018514.1 MGP_CASTEiJ_G0015261.1 mouse_genomes_project 1 32521290 32522528 + Ptpn18 protein_coding processed_transcript MGP_CASTEiJ_T0021280.1 MGP_CASTEiJ_G0015808.1 mouse_genomes_project 1 133196313 133220312 + MGP_CASTEiJ_P0021280 Pm20d1 protein_coding protein_coding MGP_CASTEiJ_T0021281.1 MGP_CASTEiJ_G0015808.1 mouse_genomes_project 1 133196330 133220324 + MGP_CASTEiJ_P0021281 Pm20d1 protein_coding protein_coding MGP_CASTEiJ_T0021282.1 MGP_CASTEiJ_G0015808.1 mouse_genomes_project 1 133211021 133215269 + MGP_CASTEiJ_P0021282 Pm20d1 protein_coding protein_coding MGP_CASTEiJ_T0021283.1 MGP_CASTEiJ_G0015808.1 mouse_genomes_project 1 133211059 133211304 + Pm20d1 protein_coding processed_transcript MGP_CASTEiJ_T0011844.1 MGP_CASTEiJ_G0010007.1 mouse_genomes_project 1 107036437 107036707 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009231.1 MGP_CASTEiJ_G0007419.1 mouse_genomes_project 1 27278353 27278457 - Gm23785 miRNA miRNA MGP_CASTEiJ_T0101927.1 MGP_CASTEiJ_G0038652.1 mouse_genomes_project 1 102615283 102616679 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002763.1 MGP_CASTEiJ_G0002622.1 mouse_genomes_project 1 105904284 105912527 + Gm17634 antisense antisense MGP_CASTEiJ_T0002764.1 MGP_CASTEiJ_G0002622.1 mouse_genomes_project 1 105905040 105912680 + Gm17634 antisense antisense MGP_CASTEiJ_T0002765.1 MGP_CASTEiJ_G0002622.1 mouse_genomes_project 1 105905433 105905792 + Gm17634 antisense antisense MGP_CASTEiJ_T0018247.1 MGP_CASTEiJ_G0015203.1 mouse_genomes_project 1 13297887 13335036 - MGP_CASTEiJ_P0018247 Sbspon protein_coding protein_coding MGP_CASTEiJ_T0019051.1 MGP_CASTEiJ_G0015363.1 mouse_genomes_project 1 51516585 51550111 - MGP_CASTEiJ_P0019051 Inpp1 protein_coding protein_coding MGP_CASTEiJ_T0019052.1 MGP_CASTEiJ_G0015363.1 mouse_genomes_project 1 51521324 51531326 - MGP_CASTEiJ_P0019052 Inpp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019053.1 MGP_CASTEiJ_G0015363.1 mouse_genomes_project 1 51521712 51526733 - Inpp1 protein_coding retained_intron MGP_CASTEiJ_T0019054.1 MGP_CASTEiJ_G0015363.1 mouse_genomes_project 1 51526349 51549991 - MGP_CASTEiJ_P0019054 Inpp1 protein_coding protein_coding MGP_CASTEiJ_T0019055.1 MGP_CASTEiJ_G0015363.1 mouse_genomes_project 1 51528661 51549874 - Inpp1 protein_coding retained_intron MGP_CASTEiJ_T0019056.1 MGP_CASTEiJ_G0015363.1 mouse_genomes_project 1 51528748 51532194 - MGP_CASTEiJ_P0019056 Inpp1 protein_coding protein_coding MGP_CASTEiJ_T0000680.1 MGP_CASTEiJ_G0000624.1 mouse_genomes_project 1 163895194 163899206 + TEC TEC MGP_CASTEiJ_T0101714.1 MGP_CASTEiJ_G0038530.1 mouse_genomes_project 1 97507732 97598237 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101715.1 MGP_CASTEiJ_G0038530.1 mouse_genomes_project 1 97532477 97597897 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0022989.1 MGP_CASTEiJ_G0016177.1 mouse_genomes_project 1 178782190 178879281 - MGP_CASTEiJ_P0022989 Grem2 protein_coding protein_coding MGP_CASTEiJ_T0011872.1 MGP_CASTEiJ_G0010035.1 mouse_genomes_project 1 119374321 119374632 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005785.1 MGP_CASTEiJ_G0004863.1 mouse_genomes_project 1 157066566 157075506 - lincRNA lincRNA MGP_CASTEiJ_T0020642.1 MGP_CASTEiJ_G0015672.1 mouse_genomes_project 1 93083747 93084803 + MGP_CASTEiJ_P0020642 Olfr12 protein_coding protein_coding MGP_CASTEiJ_T0019847.1 MGP_CASTEiJ_G0015513.1 mouse_genomes_project 1 74363360 74391504 + MGP_CASTEiJ_P0019847 Cyp27a1 protein_coding protein_coding MGP_CASTEiJ_T0019848.1 MGP_CASTEiJ_G0015513.1 mouse_genomes_project 1 74388970 74390336 + Cyp27a1 protein_coding retained_intron MGP_CASTEiJ_T0019849.1 MGP_CASTEiJ_G0015513.1 mouse_genomes_project 1 74390428 74391435 + Cyp27a1 protein_coding retained_intron MGP_CASTEiJ_T0018164.1 MGP_CASTEiJ_G0015186.1 mouse_genomes_project 1 7467352 7566712 - MGP_CASTEiJ_P0018164 Arfgef1 protein_coding protein_coding MGP_CASTEiJ_T0018165.1 MGP_CASTEiJ_G0015186.1 mouse_genomes_project 1 7468475 7471485 - Arfgef1 protein_coding retained_intron MGP_CASTEiJ_T0018166.1 MGP_CASTEiJ_G0015186.1 mouse_genomes_project 1 7477172 7484311 - Arfgef1 protein_coding retained_intron MGP_CASTEiJ_T0018167.1 MGP_CASTEiJ_G0015186.1 mouse_genomes_project 1 7486185 7489848 - Arfgef1 protein_coding retained_intron MGP_CASTEiJ_T0018168.1 MGP_CASTEiJ_G0015186.1 mouse_genomes_project 1 7490544 7491093 - Arfgef1 protein_coding retained_intron MGP_CASTEiJ_T0018169.1 MGP_CASTEiJ_G0015186.1 mouse_genomes_project 1 7503585 7566712 - MGP_CASTEiJ_P0018169 Arfgef1 protein_coding protein_coding MGP_CASTEiJ_T0018170.1 MGP_CASTEiJ_G0015186.1 mouse_genomes_project 1 7542055 7543217 - Arfgef1 protein_coding retained_intron MGP_CASTEiJ_T0018171.1 MGP_CASTEiJ_G0015186.1 mouse_genomes_project 1 7542270 7547327 - Arfgef1 protein_coding retained_intron MGP_CASTEiJ_T0099094.1 MGP_CASTEiJ_G0036007.1 mouse_genomes_project 1 67672130 67672224 - Gm25542 snRNA snRNA MGP_CASTEiJ_T0020992.1 MGP_CASTEiJ_G0015744.1 mouse_genomes_project 1 120196524 120201989 - MGP_CASTEiJ_P0020992 Inhbb protein_coding unknown_likely_coding MGP_CASTEiJ_T0002821.1 MGP_CASTEiJ_G0002666.1 mouse_genomes_project 1 163384057 163567306 + Gm36975 antisense antisense MGP_CASTEiJ_T0018257.1 MGP_CASTEiJ_G0015206.1 mouse_genomes_project 1 13544040 13575658 + MGP_CASTEiJ_P0018257 Rdh10 protein_coding protein_coding MGP_CASTEiJ_T0018258.1 MGP_CASTEiJ_G0015206.1 mouse_genomes_project 1 13573169 13575214 + Rdh10 protein_coding retained_intron MGP_CASTEiJ_T0000473.1 MGP_CASTEiJ_G0000419.1 mouse_genomes_project 1 67887891 67889933 - TEC TEC MGP_CASTEiJ_T0000455.1 MGP_CASTEiJ_G0000401.1 mouse_genomes_project 1 60598714 60598996 + TEC TEC MGP_CASTEiJ_T0000544.1 MGP_CASTEiJ_G0000490.1 mouse_genomes_project 1 105461645 105464598 + TEC TEC MGP_CASTEiJ_T0002677.1 MGP_CASTEiJ_G0002556.1 mouse_genomes_project 1 35322914 35323916 - Gm37020 antisense antisense MGP_CASTEiJ_T0009322.1 MGP_CASTEiJ_G0007510.1 mouse_genomes_project 1 199885368 199885432 + Mir3962 miRNA miRNA MGP_CASTEiJ_T0000502.1 MGP_CASTEiJ_G0000448.1 mouse_genomes_project 1 82751104 82752149 - TEC TEC MGP_CASTEiJ_T0011994.1 MGP_CASTEiJ_G0010157.1 mouse_genomes_project 1 175322852 175323387 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020910.1 MGP_CASTEiJ_G0015729.1 mouse_genomes_project 1 107943036 107948255 - MGP_CASTEiJ_P0020910 Serpinb3c protein_coding protein_coding MGP_CASTEiJ_T0011679.1 MGP_CASTEiJ_G0009842.1 mouse_genomes_project 1 44215557 44216307 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011884.1 MGP_CASTEiJ_G0010047.1 mouse_genomes_project 1 122402744 122403209 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021558.1 MGP_CASTEiJ_G0015868.1 mouse_genomes_project 1 136904787 136909776 - MGP_CASTEiJ_P0021558 Elf3 protein_coding protein_coding MGP_CASTEiJ_T0021559.1 MGP_CASTEiJ_G0015868.1 mouse_genomes_project 1 136904791 136909646 - MGP_CASTEiJ_P0021559 Elf3 protein_coding protein_coding MGP_CASTEiJ_T0021560.1 MGP_CASTEiJ_G0015868.1 mouse_genomes_project 1 136907880 136908870 - Elf3 protein_coding retained_intron MGP_CASTEiJ_T0011620.1 MGP_CASTEiJ_G0009783.1 mouse_genomes_project 1 21859032 21859900 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022626.1 MGP_CASTEiJ_G0016073.1 mouse_genomes_project 1 173735639 173744064 + MGP_CASTEiJ_P0022626 Sh2d1b1 protein_coding protein_coding MGP_CASTEiJ_T0022284.1 MGP_CASTEiJ_G0015997.1 mouse_genomes_project 1 164419209 164430310 - MGP_CASTEiJ_P0022284 Prdx6 protein_coding protein_coding MGP_CASTEiJ_T0022285.1 MGP_CASTEiJ_G0015997.1 mouse_genomes_project 1 164420109 164430277 - MGP_CASTEiJ_P0022285 Prdx6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022286.1 MGP_CASTEiJ_G0015997.1 mouse_genomes_project 1 164420658 164430260 - Prdx6 protein_coding processed_transcript MGP_CASTEiJ_T0022287.1 MGP_CASTEiJ_G0015997.1 mouse_genomes_project 1 164420692 164430257 - MGP_CASTEiJ_P0022287 Prdx6 protein_coding protein_coding MGP_CASTEiJ_T0022288.1 MGP_CASTEiJ_G0015997.1 mouse_genomes_project 1 164420729 164430212 - Prdx6 protein_coding processed_transcript MGP_CASTEiJ_T0022289.1 MGP_CASTEiJ_G0015997.1 mouse_genomes_project 1 164420902 164429645 - Prdx6 protein_coding processed_transcript MGP_CASTEiJ_T0022290.1 MGP_CASTEiJ_G0015997.1 mouse_genomes_project 1 164422714 164430257 - Prdx6 protein_coding processed_transcript MGP_CASTEiJ_T0022291.1 MGP_CASTEiJ_G0015997.1 mouse_genomes_project 1 164427699 164430253 - Prdx6 protein_coding retained_intron MGP_CASTEiJ_T0022292.1 MGP_CASTEiJ_G0015997.1 mouse_genomes_project 1 164428657 164430253 - Prdx6 protein_coding retained_intron MGP_CASTEiJ_T0011783.1 MGP_CASTEiJ_G0009946.1 mouse_genomes_project 1 77307455 77307747 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011604.1 MGP_CASTEiJ_G0009767.1 mouse_genomes_project 1 16252045 16252954 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009282.1 MGP_CASTEiJ_G0007470.1 mouse_genomes_project 1 119705716 119705797 + Mir6346 miRNA miRNA MGP_CASTEiJ_T0011588.1 MGP_CASTEiJ_G0009751.1 mouse_genomes_project 1 8982230 8982492 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020938.1 MGP_CASTEiJ_G0015738.1 mouse_genomes_project 1 116618418 117575982 + MGP_CASTEiJ_P0020938 Cntnap5a protein_coding protein_coding MGP_CASTEiJ_T0020939.1 MGP_CASTEiJ_G0015738.1 mouse_genomes_project 1 116836760 117564332 + MGP_CASTEiJ_P0020939 Cntnap5a protein_coding unknown_likely_coding MGP_CASTEiJ_T0020104.1 MGP_CASTEiJ_G0015555.1 mouse_genomes_project 1 78454113 78467566 + MGP_CASTEiJ_P0020104 Utp14b protein_coding protein_coding MGP_CASTEiJ_T0020105.1 MGP_CASTEiJ_G0015555.1 mouse_genomes_project 1 78454515 78463636 + MGP_CASTEiJ_P0020105 Utp14b protein_coding protein_coding MGP_CASTEiJ_T0021046.1 MGP_CASTEiJ_G0015757.1 mouse_genomes_project 1 121330177 121360517 - MGP_CASTEiJ_P0021046 Marco protein_coding protein_coding MGP_CASTEiJ_T0021047.1 MGP_CASTEiJ_G0015757.1 mouse_genomes_project 1 121346537 121360249 - MGP_CASTEiJ_P0021047 Marco protein_coding protein_coding MGP_CASTEiJ_T0011952.1 MGP_CASTEiJ_G0010115.1 mouse_genomes_project 1 158034529 158035117 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099118.1 MGP_CASTEiJ_G0036031.1 mouse_genomes_project 1 135851048 135851155 - Gm24517 snRNA snRNA MGP_CASTEiJ_T0010926.1 MGP_CASTEiJ_G0009114.1 mouse_genomes_project 1 132495604 132495957 - Gm25717 misc_RNA misc_RNA MGP_CASTEiJ_T0100303.1 MGP_CASTEiJ_G0037216.1 mouse_genomes_project 1 110450658 110450788 - Gm22159 snoRNA snoRNA MGP_CASTEiJ_T0020569.1 MGP_CASTEiJ_G0015655.1 mouse_genomes_project 1 91713298 91739641 + MGP_CASTEiJ_P0020569 Scly protein_coding protein_coding MGP_CASTEiJ_T0020570.1 MGP_CASTEiJ_G0015655.1 mouse_genomes_project 1 91713320 91718457 + Scly protein_coding retained_intron MGP_CASTEiJ_T0020571.1 MGP_CASTEiJ_G0015655.1 mouse_genomes_project 1 91713328 91726510 + MGP_CASTEiJ_P0020571 Scly protein_coding protein_coding MGP_CASTEiJ_T0020572.1 MGP_CASTEiJ_G0015655.1 mouse_genomes_project 1 91713329 91727617 + MGP_CASTEiJ_P0020572 Scly protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020573.1 MGP_CASTEiJ_G0015655.1 mouse_genomes_project 1 91713330 91729094 + Scly protein_coding retained_intron MGP_CASTEiJ_T0020574.1 MGP_CASTEiJ_G0015655.1 mouse_genomes_project 1 91713364 91726476 + MGP_CASTEiJ_P0020574 Scly protein_coding protein_coding MGP_CASTEiJ_T0020575.1 MGP_CASTEiJ_G0015655.1 mouse_genomes_project 1 91713367 91726582 + MGP_CASTEiJ_P0020575 Scly protein_coding protein_coding MGP_CASTEiJ_T0020576.1 MGP_CASTEiJ_G0015655.1 mouse_genomes_project 1 91713387 91722441 + Scly protein_coding processed_transcript MGP_CASTEiJ_T0020577.1 MGP_CASTEiJ_G0015655.1 mouse_genomes_project 1 91714875 91717816 + MGP_CASTEiJ_P0020577 Scly protein_coding protein_coding MGP_CASTEiJ_T0020578.1 MGP_CASTEiJ_G0015655.1 mouse_genomes_project 1 91717743 91727638 + MGP_CASTEiJ_P0020578 Scly protein_coding protein_coding MGP_CASTEiJ_T0101496.1 MGP_CASTEiJ_G0038401.1 mouse_genomes_project 1 184620839 184627443 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101497.1 MGP_CASTEiJ_G0038401.1 mouse_genomes_project 1 184621043 184621976 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0021432.1 MGP_CASTEiJ_G0015839.1 mouse_genomes_project 1 135145503 135189925 - MGP_CASTEiJ_P0021432 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021433.1 MGP_CASTEiJ_G0015839.1 mouse_genomes_project 1 135145503 135189925 - MGP_CASTEiJ_P0021433 protein_coding protein_coding MGP_CASTEiJ_T0011816.1 MGP_CASTEiJ_G0009979.1 mouse_genomes_project 1 93809457 93810003 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000542.1 MGP_CASTEiJ_G0000488.1 mouse_genomes_project 1 104144549 104147169 + TEC TEC MGP_CASTEiJ_T0009291.1 MGP_CASTEiJ_G0007479.1 mouse_genomes_project 1 147338210 147338312 - Gm25708 miRNA miRNA MGP_CASTEiJ_T0005820.1 MGP_CASTEiJ_G0004889.1 mouse_genomes_project 1 169319633 169356806 + Gm26665 lincRNA lincRNA MGP_CASTEiJ_T0000693.1 MGP_CASTEiJ_G0000637.1 mouse_genomes_project 1 168780547 168781581 + TEC TEC MGP_CASTEiJ_T0002740.1 MGP_CASTEiJ_G0002601.1 mouse_genomes_project 1 78088128 78102576 - Gm28410 antisense antisense MGP_CASTEiJ_T0022807.1 MGP_CASTEiJ_G0016114.1 mouse_genomes_project 1 175324843 175350277 + MGP_CASTEiJ_P0022807 Cd48 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022808.1 MGP_CASTEiJ_G0016114.1 mouse_genomes_project 1 175325522 175350658 + MGP_CASTEiJ_P0022808 Cd48 protein_coding protein_coding MGP_CASTEiJ_T0005601.1 MGP_CASTEiJ_G0004715.1 mouse_genomes_project 1 62229824 62232640 + Ino80dos lincRNA lincRNA MGP_CASTEiJ_T0005602.1 MGP_CASTEiJ_G0004715.1 mouse_genomes_project 1 62232150 62281492 + Ino80dos lincRNA lincRNA MGP_CASTEiJ_T0005603.1 MGP_CASTEiJ_G0004715.1 mouse_genomes_project 1 62232419 62279850 + Ino80dos lincRNA lincRNA MGP_CASTEiJ_T0019876.1 MGP_CASTEiJ_G0015524.1 mouse_genomes_project 1 74751806 74760040 - MGP_CASTEiJ_P0019876 Cnppd1 protein_coding protein_coding MGP_CASTEiJ_T0019877.1 MGP_CASTEiJ_G0015524.1 mouse_genomes_project 1 74753020 74759091 - MGP_CASTEiJ_P0019877 Cnppd1 protein_coding protein_coding MGP_CASTEiJ_T0019878.1 MGP_CASTEiJ_G0015524.1 mouse_genomes_project 1 74753023 74756294 - Cnppd1 protein_coding retained_intron MGP_CASTEiJ_T0019879.1 MGP_CASTEiJ_G0015524.1 mouse_genomes_project 1 74753023 74760099 - MGP_CASTEiJ_P0019879 Cnppd1 protein_coding protein_coding MGP_CASTEiJ_T0019880.1 MGP_CASTEiJ_G0015524.1 mouse_genomes_project 1 74754037 74755284 - Cnppd1 protein_coding retained_intron MGP_CASTEiJ_T0019881.1 MGP_CASTEiJ_G0015524.1 mouse_genomes_project 1 74754344 74755229 - Cnppd1 protein_coding retained_intron MGP_CASTEiJ_T0019882.1 MGP_CASTEiJ_G0015524.1 mouse_genomes_project 1 74756764 74759203 - MGP_CASTEiJ_P0019882 Cnppd1 protein_coding protein_coding MGP_CASTEiJ_T0019883.1 MGP_CASTEiJ_G0015524.1 mouse_genomes_project 1 74757014 74760113 - MGP_CASTEiJ_P0019883 Cnppd1 protein_coding protein_coding MGP_CASTEiJ_T0011555.1 MGP_CASTEiJ_G0009718.1 mouse_genomes_project 1 2194444 2194716 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011845.1 MGP_CASTEiJ_G0010008.1 mouse_genomes_project 1 107490835 107494686 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101944.1 MGP_CASTEiJ_G0038669.1 mouse_genomes_project 1 176869458 176870818 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011699.1 MGP_CASTEiJ_G0009862.1 mouse_genomes_project 1 48810880 48812466 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020583.1 MGP_CASTEiJ_G0015658.1 mouse_genomes_project 1 91786695 91794486 + MGP_CASTEiJ_P0020583 Fam132b protein_coding protein_coding MGP_CASTEiJ_T0020584.1 MGP_CASTEiJ_G0015658.1 mouse_genomes_project 1 91790957 91794361 + MGP_CASTEiJ_P0020584 Fam132b protein_coding protein_coding MGP_CASTEiJ_T0018894.1 MGP_CASTEiJ_G0015338.1 mouse_genomes_project 1 42770679 42790136 - MGP_CASTEiJ_P0018894 Tex30 protein_coding protein_coding MGP_CASTEiJ_T0018895.1 MGP_CASTEiJ_G0015338.1 mouse_genomes_project 1 42770682 42790183 - MGP_CASTEiJ_P0018895 Tex30 protein_coding protein_coding MGP_CASTEiJ_T0018896.1 MGP_CASTEiJ_G0015338.1 mouse_genomes_project 1 42770876 42790107 - MGP_CASTEiJ_P0018896 Tex30 protein_coding protein_coding MGP_CASTEiJ_T0018897.1 MGP_CASTEiJ_G0015338.1 mouse_genomes_project 1 42770876 42790088 - MGP_CASTEiJ_P0018897 Tex30 protein_coding protein_coding MGP_CASTEiJ_T0018898.1 MGP_CASTEiJ_G0015338.1 mouse_genomes_project 1 42770926 42790168 - MGP_CASTEiJ_P0018898 Tex30 protein_coding protein_coding MGP_CASTEiJ_T0018899.1 MGP_CASTEiJ_G0015338.1 mouse_genomes_project 1 42770927 42790186 - MGP_CASTEiJ_P0018899 Tex30 protein_coding protein_coding MGP_CASTEiJ_T0018900.1 MGP_CASTEiJ_G0015338.1 mouse_genomes_project 1 42770933 42789422 - MGP_CASTEiJ_P0018900 Tex30 protein_coding protein_coding MGP_CASTEiJ_T0018901.1 MGP_CASTEiJ_G0015338.1 mouse_genomes_project 1 42771095 42790178 - MGP_CASTEiJ_P0018901 Tex30 protein_coding protein_coding MGP_CASTEiJ_T0018902.1 MGP_CASTEiJ_G0015338.1 mouse_genomes_project 1 42771972 42790146 - MGP_CASTEiJ_P0018902 Tex30 protein_coding protein_coding MGP_CASTEiJ_T0018903.1 MGP_CASTEiJ_G0015338.1 mouse_genomes_project 1 42772088 42789758 - MGP_CASTEiJ_P0018903 Tex30 protein_coding protein_coding MGP_CASTEiJ_T0018904.1 MGP_CASTEiJ_G0015338.1 mouse_genomes_project 1 42772568 42790159 - MGP_CASTEiJ_P0018904 Tex30 protein_coding protein_coding MGP_CASTEiJ_T0018905.1 MGP_CASTEiJ_G0015338.1 mouse_genomes_project 1 42772574 42790182 - MGP_CASTEiJ_P0018905 Tex30 protein_coding protein_coding MGP_CASTEiJ_T0018906.1 MGP_CASTEiJ_G0015338.1 mouse_genomes_project 1 42772580 42787744 - MGP_CASTEiJ_P0018906 Tex30 protein_coding protein_coding MGP_CASTEiJ_T0002811.1 MGP_CASTEiJ_G0002656.1 mouse_genomes_project 1 154509755 154524419 + Gm28610 antisense antisense MGP_CASTEiJ_T0011932.1 MGP_CASTEiJ_G0010095.1 mouse_genomes_project 1 151125136 151125925 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011924.1 MGP_CASTEiJ_G0010087.1 mouse_genomes_project 1 146664559 146664964 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022238.1 MGP_CASTEiJ_G0015990.1 mouse_genomes_project 1 164057673 164132685 + MGP_CASTEiJ_P0022238 Rc3h1 protein_coding protein_coding MGP_CASTEiJ_T0022239.1 MGP_CASTEiJ_G0015990.1 mouse_genomes_project 1 164086519 164125518 + MGP_CASTEiJ_P0022239 Rc3h1 protein_coding protein_coding MGP_CASTEiJ_T0022240.1 MGP_CASTEiJ_G0015990.1 mouse_genomes_project 1 164107319 164109386 + Rc3h1 protein_coding retained_intron MGP_CASTEiJ_T0002899.1 MGP_CASTEiJ_G0002725.1 mouse_genomes_project 1 197847936 197849252 + Gm15867 antisense antisense MGP_CASTEiJ_T0011855.1 MGP_CASTEiJ_G0010018.1 mouse_genomes_project 1 112026067 112026130 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022562.1 MGP_CASTEiJ_G0016056.1 mouse_genomes_project 1 170544052 170641809 - MGP_CASTEiJ_P0022562 Uck2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022563.1 MGP_CASTEiJ_G0016056.1 mouse_genomes_project 1 170575035 170642223 - MGP_CASTEiJ_P0022563 Uck2 protein_coding protein_coding MGP_CASTEiJ_T0022564.1 MGP_CASTEiJ_G0016056.1 mouse_genomes_project 1 170578001 170641787 - MGP_CASTEiJ_P0022564 Uck2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022565.1 MGP_CASTEiJ_G0016056.1 mouse_genomes_project 1 170578387 170590116 - MGP_CASTEiJ_P0022565 Uck2 protein_coding protein_coding MGP_CASTEiJ_T0022566.1 MGP_CASTEiJ_G0016056.1 mouse_genomes_project 1 170578492 170597331 - MGP_CASTEiJ_P0022566 Uck2 protein_coding protein_coding MGP_CASTEiJ_T0022567.1 MGP_CASTEiJ_G0016056.1 mouse_genomes_project 1 170582043 170641504 - MGP_CASTEiJ_P0022567 Uck2 protein_coding protein_coding MGP_CASTEiJ_T0022568.1 MGP_CASTEiJ_G0016056.1 mouse_genomes_project 1 170588019 170641781 - MGP_CASTEiJ_P0022568 Uck2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022569.1 MGP_CASTEiJ_G0016056.1 mouse_genomes_project 1 170590762 170641610 - Uck2 protein_coding processed_transcript MGP_CASTEiJ_T0020873.1 MGP_CASTEiJ_G0015717.1 mouse_genomes_project 1 106341821 106409926 + MGP_CASTEiJ_P0020873 Tnfrsf11a protein_coding protein_coding MGP_CASTEiJ_T0020874.1 MGP_CASTEiJ_G0015717.1 mouse_genomes_project 1 106341853 106377976 + Tnfrsf11a protein_coding retained_intron MGP_CASTEiJ_T0020875.1 MGP_CASTEiJ_G0015717.1 mouse_genomes_project 1 106383465 106390882 + Tnfrsf11a protein_coding retained_intron MGP_CASTEiJ_T0022777.1 MGP_CASTEiJ_G0016106.1 mouse_genomes_project 1 174960831 174968382 + MGP_CASTEiJ_P0022777 Usf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022778.1 MGP_CASTEiJ_G0016106.1 mouse_genomes_project 1 174960831 174969403 + MGP_CASTEiJ_P0022778 Usf1 protein_coding protein_coding MGP_CASTEiJ_T0022779.1 MGP_CASTEiJ_G0016106.1 mouse_genomes_project 1 174960831 174967235 + MGP_CASTEiJ_P0022779 Usf1 protein_coding protein_coding MGP_CASTEiJ_T0022780.1 MGP_CASTEiJ_G0016106.1 mouse_genomes_project 1 174960844 174965991 + Usf1 protein_coding processed_transcript MGP_CASTEiJ_T0022781.1 MGP_CASTEiJ_G0016106.1 mouse_genomes_project 1 174960852 174967617 + Usf1 protein_coding retained_intron MGP_CASTEiJ_T0022782.1 MGP_CASTEiJ_G0016106.1 mouse_genomes_project 1 174960892 174965867 + Usf1 protein_coding retained_intron MGP_CASTEiJ_T0022783.1 MGP_CASTEiJ_G0016106.1 mouse_genomes_project 1 174960902 174969015 + MGP_CASTEiJ_P0022783 Usf1 protein_coding protein_coding MGP_CASTEiJ_T0022784.1 MGP_CASTEiJ_G0016106.1 mouse_genomes_project 1 174961199 174969001 + MGP_CASTEiJ_P0022784 Usf1 protein_coding protein_coding MGP_CASTEiJ_T0022785.1 MGP_CASTEiJ_G0016106.1 mouse_genomes_project 1 174967590 174968191 + Usf1 protein_coding retained_intron MGP_CASTEiJ_T0022786.1 MGP_CASTEiJ_G0016106.1 mouse_genomes_project 1 174967720 174968691 + Usf1 protein_coding retained_intron MGP_CASTEiJ_T0005628.1 MGP_CASTEiJ_G0004734.1 mouse_genomes_project 1 72862538 72903532 + Gm29185 lincRNA lincRNA MGP_CASTEiJ_T0019095.1 MGP_CASTEiJ_G0015374.1 mouse_genomes_project 1 52457395 52487800 - MGP_CASTEiJ_P0019095 Stk17b protein_coding protein_coding MGP_CASTEiJ_T0019096.1 MGP_CASTEiJ_G0015374.1 mouse_genomes_project 1 52462380 52464570 - Stk17b protein_coding retained_intron MGP_CASTEiJ_T0019097.1 MGP_CASTEiJ_G0015374.1 mouse_genomes_project 1 52462956 52487735 - MGP_CASTEiJ_P0019097 Stk17b protein_coding protein_coding MGP_CASTEiJ_T0000333.1 MGP_CASTEiJ_G0000282.1 mouse_genomes_project 1 5930751 5931906 - TEC TEC MGP_CASTEiJ_T0000478.1 MGP_CASTEiJ_G0000424.1 mouse_genomes_project 1 69704430 69706837 - TEC TEC MGP_CASTEiJ_T0098782.1 MGP_CASTEiJ_G0035713.1 mouse_genomes_project 1 49834316 49836602 + Gm28320 sense_intronic sense_intronic MGP_CASTEiJ_T0021791.1 MGP_CASTEiJ_G0015912.1 mouse_genomes_project 1 146341334 146346149 - MGP_CASTEiJ_P0021791 Rgs2 protein_coding protein_coding MGP_CASTEiJ_T0021792.1 MGP_CASTEiJ_G0015912.1 mouse_genomes_project 1 146343675 146346123 - MGP_CASTEiJ_P0021792 Rgs2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021793.1 MGP_CASTEiJ_G0015912.1 mouse_genomes_project 1 146343878 146346020 - MGP_CASTEiJ_P0021793 Rgs2 protein_coding protein_coding MGP_CASTEiJ_T0021794.1 MGP_CASTEiJ_G0015912.1 mouse_genomes_project 1 146344511 146346109 - Rgs2 protein_coding retained_intron MGP_CASTEiJ_T0011646.1 MGP_CASTEiJ_G0009809.1 mouse_genomes_project 1 32594933 32595226 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000418.1 MGP_CASTEiJ_G0000364.1 mouse_genomes_project 1 35915386 35917603 - TEC TEC MGP_CASTEiJ_T0101717.1 MGP_CASTEiJ_G0038532.1 mouse_genomes_project 1 173679011 173679205 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0000612.1 MGP_CASTEiJ_G0000557.1 mouse_genomes_project 1 139663600 139663895 + TEC TEC MGP_CASTEiJ_T0020918.1 MGP_CASTEiJ_G0015733.1 mouse_genomes_project 1 108229670 108254606 + MGP_CASTEiJ_P0020918 protein_coding protein_coding MGP_CASTEiJ_T0022440.1 MGP_CASTEiJ_G0016031.1 mouse_genomes_project 1 167707362 167746466 - MGP_CASTEiJ_P0022440 Atp1b1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022441.1 MGP_CASTEiJ_G0016031.1 mouse_genomes_project 1 167723746 167746855 - MGP_CASTEiJ_P0022441 Atp1b1 protein_coding protein_coding MGP_CASTEiJ_T0022442.1 MGP_CASTEiJ_G0016031.1 mouse_genomes_project 1 167728170 167730796 - Atp1b1 protein_coding processed_transcript MGP_CASTEiJ_T0022443.1 MGP_CASTEiJ_G0016031.1 mouse_genomes_project 1 167728170 167742341 - MGP_CASTEiJ_P0022443 Atp1b1 protein_coding protein_coding MGP_CASTEiJ_T0022444.1 MGP_CASTEiJ_G0016031.1 mouse_genomes_project 1 167741825 167746521 - Atp1b1 protein_coding retained_intron MGP_CASTEiJ_T0019521.1 MGP_CASTEiJ_G0015450.1 mouse_genomes_project 1 63875390 63914688 + MGP_CASTEiJ_P0019521 Ccnyl1 protein_coding protein_coding MGP_CASTEiJ_T0019522.1 MGP_CASTEiJ_G0015450.1 mouse_genomes_project 1 63875757 63912990 + MGP_CASTEiJ_P0019522 Ccnyl1 protein_coding protein_coding MGP_CASTEiJ_T0019523.1 MGP_CASTEiJ_G0015450.1 mouse_genomes_project 1 63876118 63900526 + MGP_CASTEiJ_P0019523 Ccnyl1 protein_coding protein_coding MGP_CASTEiJ_T0019524.1 MGP_CASTEiJ_G0015450.1 mouse_genomes_project 1 63876280 63914684 + MGP_CASTEiJ_P0019524 Ccnyl1 protein_coding protein_coding MGP_CASTEiJ_T0011623.1 MGP_CASTEiJ_G0009786.1 mouse_genomes_project 1 23356957 23357526 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012004.1 MGP_CASTEiJ_G0010167.1 mouse_genomes_project 1 182952281 182952753 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002879.1 MGP_CASTEiJ_G0002713.1 mouse_genomes_project 1 194204861 194206327 + A430027H14Rik antisense antisense MGP_CASTEiJ_T0002880.1 MGP_CASTEiJ_G0002713.1 mouse_genomes_project 1 194205414 194206303 + A430027H14Rik antisense antisense MGP_CASTEiJ_T0005854.1 MGP_CASTEiJ_G0004916.1 mouse_genomes_project 1 187177155 187177654 + Gm37218 lincRNA lincRNA MGP_CASTEiJ_T0020413.1 MGP_CASTEiJ_G0015618.1 mouse_genomes_project 1 87540680 87633863 + MGP_CASTEiJ_P0020413 Neu2 protein_coding protein_coding MGP_CASTEiJ_T0020414.1 MGP_CASTEiJ_G0015618.1 mouse_genomes_project 1 87607512 87635031 + MGP_CASTEiJ_P0020414 Neu2 protein_coding protein_coding MGP_CASTEiJ_T0020415.1 MGP_CASTEiJ_G0015618.1 mouse_genomes_project 1 87607512 87635014 + MGP_CASTEiJ_P0020415 Neu2 protein_coding protein_coding MGP_CASTEiJ_T0020416.1 MGP_CASTEiJ_G0015618.1 mouse_genomes_project 1 87607531 87633758 + MGP_CASTEiJ_P0020416 Neu2 protein_coding protein_coding MGP_CASTEiJ_T0020417.1 MGP_CASTEiJ_G0015618.1 mouse_genomes_project 1 87618008 87635038 + MGP_CASTEiJ_P0020417 Neu2 protein_coding protein_coding MGP_CASTEiJ_T0020418.1 MGP_CASTEiJ_G0015618.1 mouse_genomes_project 1 87631052 87635014 + MGP_CASTEiJ_P0020418 Neu2 protein_coding protein_coding MGP_CASTEiJ_T0020419.1 MGP_CASTEiJ_G0015618.1 mouse_genomes_project 1 87631052 87635020 + MGP_CASTEiJ_P0020419 Neu2 protein_coding protein_coding MGP_CASTEiJ_T0002715.1 MGP_CASTEiJ_G0002585.1 mouse_genomes_project 1 60817949 60906797 - Pard3bos1 antisense antisense MGP_CASTEiJ_T0002716.1 MGP_CASTEiJ_G0002585.1 mouse_genomes_project 1 60837866 60906873 - Pard3bos1 antisense antisense MGP_CASTEiJ_T0018248.1 MGP_CASTEiJ_G0015204.1 mouse_genomes_project 1 13503275 13518872 - MGP_CASTEiJ_P0018248 4930444P10Rik protein_coding protein_coding MGP_CASTEiJ_T0018249.1 MGP_CASTEiJ_G0015204.1 mouse_genomes_project 1 13503275 13530161 - MGP_CASTEiJ_P0018249 4930444P10Rik protein_coding protein_coding MGP_CASTEiJ_T0018250.1 MGP_CASTEiJ_G0015204.1 mouse_genomes_project 1 13503275 13530161 - MGP_CASTEiJ_P0018250 4930444P10Rik protein_coding protein_coding MGP_CASTEiJ_T0005712.1 MGP_CASTEiJ_G0004804.1 mouse_genomes_project 1 119815370 119816745 + Gm26831 lincRNA lincRNA MGP_CASTEiJ_T0002903.1 MGP_CASTEiJ_G0002729.1 mouse_genomes_project 1 200024017 200044314 - Gm16897 antisense antisense MGP_CASTEiJ_T0000683.1 MGP_CASTEiJ_G0000627.1 mouse_genomes_project 1 164070222 164073792 + TEC TEC MGP_CASTEiJ_T0005697.1 MGP_CASTEiJ_G0004792.1 mouse_genomes_project 1 102387925 102390059 - Gm28187 lincRNA lincRNA MGP_CASTEiJ_T0000423.1 MGP_CASTEiJ_G0000369.1 mouse_genomes_project 1 38459827 38462873 + TEC TEC MGP_CASTEiJ_T0023381.1 MGP_CASTEiJ_G0016259.1 mouse_genomes_project 1 189928367 189957502 + MGP_CASTEiJ_P0023381 Bpnt1 protein_coding protein_coding MGP_CASTEiJ_T0023382.1 MGP_CASTEiJ_G0016259.1 mouse_genomes_project 1 189928379 189955386 + MGP_CASTEiJ_P0023382 Bpnt1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023383.1 MGP_CASTEiJ_G0016259.1 mouse_genomes_project 1 189928391 189942826 + MGP_CASTEiJ_P0023383 Bpnt1 protein_coding protein_coding MGP_CASTEiJ_T0023384.1 MGP_CASTEiJ_G0016259.1 mouse_genomes_project 1 189928398 189955546 + MGP_CASTEiJ_P0023384 Bpnt1 protein_coding protein_coding MGP_CASTEiJ_T0023385.1 MGP_CASTEiJ_G0016259.1 mouse_genomes_project 1 189928425 189944211 + Bpnt1 protein_coding processed_transcript MGP_CASTEiJ_T0011865.1 MGP_CASTEiJ_G0010028.1 mouse_genomes_project 1 114486491 114487227 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005609.1 MGP_CASTEiJ_G0004720.1 mouse_genomes_project 1 63363304 63474818 - Gm28981 lincRNA lincRNA MGP_CASTEiJ_T0101938.1 MGP_CASTEiJ_G0038663.1 mouse_genomes_project 1 164348032 164412152 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100336.1 MGP_CASTEiJ_G0037249.1 mouse_genomes_project 1 168755679 168755764 + Gm24637 snoRNA snoRNA MGP_CASTEiJ_T0005565.1 MGP_CASTEiJ_G0004684.1 mouse_genomes_project 1 41339677 41341827 + Dalir lincRNA lincRNA MGP_CASTEiJ_T0011927.1 MGP_CASTEiJ_G0010090.1 mouse_genomes_project 1 147569961 147570957 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022922.1 MGP_CASTEiJ_G0016140.1 mouse_genomes_project 1 176388314 176391156 + MGP_CASTEiJ_P0022922 Crp protein_coding protein_coding MGP_CASTEiJ_T0022923.1 MGP_CASTEiJ_G0016140.1 mouse_genomes_project 1 176388315 176523062 + Crp protein_coding processed_transcript MGP_CASTEiJ_T0022906.1 MGP_CASTEiJ_G0016135.1 mouse_genomes_project 1 176206239 176209673 + Cfap45 protein_coding retained_intron MGP_CASTEiJ_T0022907.1 MGP_CASTEiJ_G0016135.1 mouse_genomes_project 1 176206482 176232492 + MGP_CASTEiJ_P0022907 Cfap45 protein_coding protein_coding MGP_CASTEiJ_T0022908.1 MGP_CASTEiJ_G0016135.1 mouse_genomes_project 1 176206574 176218048 + Cfap45 protein_coding retained_intron MGP_CASTEiJ_T0022909.1 MGP_CASTEiJ_G0016135.1 mouse_genomes_project 1 176206577 176217942 + MGP_CASTEiJ_P0022909 Cfap45 protein_coding protein_coding MGP_CASTEiJ_T0022910.1 MGP_CASTEiJ_G0016135.1 mouse_genomes_project 1 176206619 176217919 + MGP_CASTEiJ_P0022910 Cfap45 protein_coding protein_coding MGP_CASTEiJ_T0022911.1 MGP_CASTEiJ_G0016135.1 mouse_genomes_project 1 176211495 176218002 + MGP_CASTEiJ_P0022911 Cfap45 protein_coding protein_coding MGP_CASTEiJ_T0022912.1 MGP_CASTEiJ_G0016135.1 mouse_genomes_project 1 176211856 176218002 + MGP_CASTEiJ_P0022912 Cfap45 protein_coding protein_coding MGP_CASTEiJ_T0022913.1 MGP_CASTEiJ_G0016135.1 mouse_genomes_project 1 176224301 176227260 + MGP_CASTEiJ_P0022913 Cfap45 protein_coding protein_coding MGP_CASTEiJ_T0018414.1 MGP_CASTEiJ_G0015244.1 mouse_genomes_project 1 26617866 26621983 - MGP_CASTEiJ_P0018414 Gm597 protein_coding protein_coding MGP_CASTEiJ_T0020767.1 MGP_CASTEiJ_G0015696.1 mouse_genomes_project 1 94231054 94286534 - MGP_CASTEiJ_P0020767 Thap4 protein_coding protein_coding MGP_CASTEiJ_T0020768.1 MGP_CASTEiJ_G0015696.1 mouse_genomes_project 1 94234533 94260187 - MGP_CASTEiJ_P0020768 Thap4 protein_coding protein_coding MGP_CASTEiJ_T0020769.1 MGP_CASTEiJ_G0015696.1 mouse_genomes_project 1 94234536 94286618 - MGP_CASTEiJ_P0020769 Thap4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020770.1 MGP_CASTEiJ_G0015696.1 mouse_genomes_project 1 94234537 94244042 - MGP_CASTEiJ_P0020770 Thap4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020771.1 MGP_CASTEiJ_G0015696.1 mouse_genomes_project 1 94243839 94281712 - MGP_CASTEiJ_P0020771 Thap4 protein_coding protein_coding MGP_CASTEiJ_T0020772.1 MGP_CASTEiJ_G0015696.1 mouse_genomes_project 1 94253375 94286404 - Thap4 protein_coding retained_intron MGP_CASTEiJ_T0009236.1 MGP_CASTEiJ_G0007424.1 mouse_genomes_project 1 34282835 34282895 - Mir6897 miRNA miRNA MGP_CASTEiJ_T0005641.1 MGP_CASTEiJ_G0004743.1 mouse_genomes_project 1 76143834 76158262 + Gm17751 lincRNA lincRNA MGP_CASTEiJ_T0005642.1 MGP_CASTEiJ_G0004743.1 mouse_genomes_project 1 76143834 76157678 + Gm17751 lincRNA lincRNA MGP_CASTEiJ_T0005666.1 MGP_CASTEiJ_G0004764.1 mouse_genomes_project 1 89028459 89029311 + Platr5 lincRNA lincRNA MGP_CASTEiJ_T0005667.1 MGP_CASTEiJ_G0004764.1 mouse_genomes_project 1 89028523 89029284 + Platr5 lincRNA lincRNA MGP_CASTEiJ_T0022463.1 MGP_CASTEiJ_G0016038.1 mouse_genomes_project 1 168648624 168769494 - MGP_CASTEiJ_P0022463 Dcaf6 protein_coding protein_coding MGP_CASTEiJ_T0022464.1 MGP_CASTEiJ_G0016038.1 mouse_genomes_project 1 168649243 168672652 - Dcaf6 protein_coding retained_intron MGP_CASTEiJ_T0022465.1 MGP_CASTEiJ_G0016038.1 mouse_genomes_project 1 168671714 168710335 - MGP_CASTEiJ_P0022465 Dcaf6 protein_coding protein_coding MGP_CASTEiJ_T0022466.1 MGP_CASTEiJ_G0016038.1 mouse_genomes_project 1 168672144 168710350 - MGP_CASTEiJ_P0022466 Dcaf6 protein_coding protein_coding MGP_CASTEiJ_T0022467.1 MGP_CASTEiJ_G0016038.1 mouse_genomes_project 1 168691890 168769504 - Dcaf6 protein_coding processed_transcript MGP_CASTEiJ_T0018829.1 MGP_CASTEiJ_G0015322.1 mouse_genomes_project 1 38941608 38994319 + MGP_CASTEiJ_P0018829 Slc9a4 protein_coding protein_coding MGP_CASTEiJ_T0018830.1 MGP_CASTEiJ_G0015322.1 mouse_genomes_project 1 38941732 38946970 + Slc9a4 protein_coding processed_transcript MGP_CASTEiJ_T0018831.1 MGP_CASTEiJ_G0015322.1 mouse_genomes_project 1 38962816 38965131 + Slc9a4 protein_coding processed_transcript MGP_CASTEiJ_T0018832.1 MGP_CASTEiJ_G0015322.1 mouse_genomes_project 1 38992561 38994010 + Slc9a4 protein_coding retained_intron MGP_CASTEiJ_T0021907.1 MGP_CASTEiJ_G0015932.1 mouse_genomes_project 1 155053407 155072458 - MGP_CASTEiJ_P0021907 Tsen15 protein_coding protein_coding MGP_CASTEiJ_T0021908.1 MGP_CASTEiJ_G0015932.1 mouse_genomes_project 1 155053510 155055836 - Tsen15 protein_coding retained_intron MGP_CASTEiJ_T0021909.1 MGP_CASTEiJ_G0015932.1 mouse_genomes_project 1 155053877 155072368 - MGP_CASTEiJ_P0021909 Tsen15 protein_coding protein_coding MGP_CASTEiJ_T0021910.1 MGP_CASTEiJ_G0015932.1 mouse_genomes_project 1 155053884 155067263 - Tsen15 protein_coding retained_intron MGP_CASTEiJ_T0021911.1 MGP_CASTEiJ_G0015932.1 mouse_genomes_project 1 155055528 155067610 - Tsen15 protein_coding retained_intron MGP_CASTEiJ_T0021912.1 MGP_CASTEiJ_G0015932.1 mouse_genomes_project 1 155066862 155072464 - Tsen15 protein_coding processed_transcript MGP_CASTEiJ_T0021913.1 MGP_CASTEiJ_G0015932.1 mouse_genomes_project 1 155067720 155072396 - Tsen15 protein_coding retained_intron MGP_CASTEiJ_T0011850.1 MGP_CASTEiJ_G0010013.1 mouse_genomes_project 1 109366611 109366789 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000570.1 MGP_CASTEiJ_G0000516.1 mouse_genomes_project 1 125923352 125926475 - TEC TEC MGP_CASTEiJ_T0011923.1 MGP_CASTEiJ_G0010086.1 mouse_genomes_project 1 146575631 146577301 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019517.1 MGP_CASTEiJ_G0015449.1 mouse_genomes_project 1 63790976 63800700 - MGP_CASTEiJ_P0019517 Mettl21a protein_coding protein_coding MGP_CASTEiJ_T0019518.1 MGP_CASTEiJ_G0015449.1 mouse_genomes_project 1 63790983 63800626 - MGP_CASTEiJ_P0019518 Mettl21a protein_coding protein_coding MGP_CASTEiJ_T0019519.1 MGP_CASTEiJ_G0015449.1 mouse_genomes_project 1 63792462 63799073 - Mettl21a protein_coding processed_transcript MGP_CASTEiJ_T0019520.1 MGP_CASTEiJ_G0015449.1 mouse_genomes_project 1 63798537 63800642 - Mettl21a protein_coding processed_transcript MGP_CASTEiJ_T0098441.1 MGP_CASTEiJ_G0035372.1 mouse_genomes_project 1 169097001 169097119 - Gm24808 rRNA rRNA MGP_CASTEiJ_T0021762.1 MGP_CASTEiJ_G0015907.1 mouse_genomes_project 1 145937408 146056037 - MGP_CASTEiJ_P0021762 Cdc73 protein_coding protein_coding MGP_CASTEiJ_T0021763.1 MGP_CASTEiJ_G0015907.1 mouse_genomes_project 1 145944776 145981916 - Cdc73 protein_coding processed_transcript MGP_CASTEiJ_T0021764.1 MGP_CASTEiJ_G0015907.1 mouse_genomes_project 1 145975192 145977950 - Cdc73 protein_coding retained_intron MGP_CASTEiJ_T0021765.1 MGP_CASTEiJ_G0015907.1 mouse_genomes_project 1 145980840 145983692 - Cdc73 protein_coding retained_intron MGP_CASTEiJ_T0021767.1 MGP_CASTEiJ_G0015907.1 mouse_genomes_project 1 146040255 146055345 - MGP_CASTEiJ_P0021767 Cdc73 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019901.1 MGP_CASTEiJ_G0015527.1 mouse_genomes_project 1 74789738 74798422 - MGP_CASTEiJ_P0019901 Abcb6 protein_coding protein_coding MGP_CASTEiJ_T0019902.1 MGP_CASTEiJ_G0015527.1 mouse_genomes_project 1 74789740 74798316 - Abcb6 protein_coding retained_intron MGP_CASTEiJ_T0019903.1 MGP_CASTEiJ_G0015527.1 mouse_genomes_project 1 74789779 74790891 - MGP_CASTEiJ_P0019903 Abcb6 protein_coding protein_coding MGP_CASTEiJ_T0019904.1 MGP_CASTEiJ_G0015527.1 mouse_genomes_project 1 74790741 74798316 - Abcb6 protein_coding retained_intron MGP_CASTEiJ_T0019905.1 MGP_CASTEiJ_G0015527.1 mouse_genomes_project 1 74793566 74796975 - Abcb6 protein_coding retained_intron MGP_CASTEiJ_T0019906.1 MGP_CASTEiJ_G0015527.1 mouse_genomes_project 1 74795921 74798406 - Abcb6 protein_coding retained_intron MGP_CASTEiJ_T0020860.1 MGP_CASTEiJ_G0015716.1 mouse_genomes_project 1 106217611 106243264 + 2310035C23Rik protein_coding processed_transcript MGP_CASTEiJ_T0020861.1 MGP_CASTEiJ_G0015716.1 mouse_genomes_project 1 106217611 106312322 + MGP_CASTEiJ_P0020861 2310035C23Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020862.1 MGP_CASTEiJ_G0015716.1 mouse_genomes_project 1 106217633 106312325 + MGP_CASTEiJ_P0020862 2310035C23Rik protein_coding protein_coding MGP_CASTEiJ_T0020863.1 MGP_CASTEiJ_G0015716.1 mouse_genomes_project 1 106217663 106313441 + MGP_CASTEiJ_P0020863 2310035C23Rik protein_coding protein_coding MGP_CASTEiJ_T0020864.1 MGP_CASTEiJ_G0015716.1 mouse_genomes_project 1 106217673 106311978 + MGP_CASTEiJ_P0020864 2310035C23Rik protein_coding protein_coding MGP_CASTEiJ_T0020865.1 MGP_CASTEiJ_G0015716.1 mouse_genomes_project 1 106217687 106218902 + 2310035C23Rik protein_coding processed_transcript MGP_CASTEiJ_T0020866.1 MGP_CASTEiJ_G0015716.1 mouse_genomes_project 1 106217989 106262711 + MGP_CASTEiJ_P0020866 2310035C23Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0020867.1 MGP_CASTEiJ_G0015716.1 mouse_genomes_project 1 106218191 106296578 + 2310035C23Rik protein_coding retained_intron MGP_CASTEiJ_T0020868.1 MGP_CASTEiJ_G0015716.1 mouse_genomes_project 1 106252725 106313436 + MGP_CASTEiJ_P0020868 2310035C23Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020869.1 MGP_CASTEiJ_G0015716.1 mouse_genomes_project 1 106262130 106274549 + 2310035C23Rik protein_coding retained_intron MGP_CASTEiJ_T0020870.1 MGP_CASTEiJ_G0015716.1 mouse_genomes_project 1 106288261 106292639 + 2310035C23Rik protein_coding retained_intron MGP_CASTEiJ_T0020871.1 MGP_CASTEiJ_G0015716.1 mouse_genomes_project 1 106298288 106311792 + 2310035C23Rik protein_coding retained_intron MGP_CASTEiJ_T0020872.1 MGP_CASTEiJ_G0015716.1 mouse_genomes_project 1 106299057 106309251 + 2310035C23Rik protein_coding retained_intron MGP_CASTEiJ_T0101939.1 MGP_CASTEiJ_G0038664.1 mouse_genomes_project 1 173293425 173293628 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0018176.1 MGP_CASTEiJ_G0015188.1 mouse_genomes_project 1 8316859 8653838 + MGP_CASTEiJ_P0018176 Prex2 protein_coding protein_coding MGP_CASTEiJ_T0018177.1 MGP_CASTEiJ_G0015188.1 mouse_genomes_project 1 8316912 8319978 + Prex2 protein_coding retained_intron MGP_CASTEiJ_T0018178.1 MGP_CASTEiJ_G0015188.1 mouse_genomes_project 1 8427444 8491869 + Prex2 protein_coding retained_intron MGP_CASTEiJ_T0018179.1 MGP_CASTEiJ_G0015188.1 mouse_genomes_project 1 8482505 8502252 + Prex2 protein_coding retained_intron MGP_CASTEiJ_T0018182.1 MGP_CASTEiJ_G0015188.1 mouse_genomes_project 1 8607365 8646743 + MGP_CASTEiJ_P0018182 Prex2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018183.1 MGP_CASTEiJ_G0015188.1 mouse_genomes_project 1 8631606 8646942 + MGP_CASTEiJ_P0018183 Prex2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021710.1 MGP_CASTEiJ_G0015896.1 mouse_genomes_project 1 140360568 140441056 - MGP_CASTEiJ_P0021710 Nek7 protein_coding protein_coding MGP_CASTEiJ_T0021711.1 MGP_CASTEiJ_G0015896.1 mouse_genomes_project 1 140391456 140499566 - Nek7 protein_coding retained_intron MGP_CASTEiJ_T0100308.1 MGP_CASTEiJ_G0037221.1 mouse_genomes_project 1 124376503 124376634 - Gm24791 snoRNA snoRNA MGP_CASTEiJ_T0005841.1 MGP_CASTEiJ_G0004908.1 mouse_genomes_project 1 184824399 184834923 - Gm37267 lincRNA lincRNA MGP_CASTEiJ_T0011645.1 MGP_CASTEiJ_G0009808.1 mouse_genomes_project 1 32410625 32414080 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016319.1 MGP_CASTEiJ_G0014433.1 mouse_genomes_project 1 162707301 162785496 + Gm10530 processed_transcript sense_intronic MGP_CASTEiJ_T0016320.1 MGP_CASTEiJ_G0014433.1 mouse_genomes_project 1 162782281 162785496 + Gm10530 processed_transcript lincRNA MGP_CASTEiJ_T0018403.1 MGP_CASTEiJ_G0015242.1 mouse_genomes_project 1 22817336 22967912 - MGP_CASTEiJ_P0018403 Adgrb3 protein_coding protein_coding MGP_CASTEiJ_T0018404.1 MGP_CASTEiJ_G0015242.1 mouse_genomes_project 1 22817410 23578509 - MGP_CASTEiJ_P0018404 Adgrb3 protein_coding protein_coding MGP_CASTEiJ_T0018405.1 MGP_CASTEiJ_G0015242.1 mouse_genomes_project 1 22817410 23582078 - MGP_CASTEiJ_P0018405 Adgrb3 protein_coding protein_coding MGP_CASTEiJ_T0018406.1 MGP_CASTEiJ_G0015242.1 mouse_genomes_project 1 22817410 23581883 - MGP_CASTEiJ_P0018406 Adgrb3 protein_coding protein_coding MGP_CASTEiJ_T0018407.1 MGP_CASTEiJ_G0015242.1 mouse_genomes_project 1 22817538 23579130 - MGP_CASTEiJ_P0018407 Adgrb3 protein_coding protein_coding MGP_CASTEiJ_T0018408.1 MGP_CASTEiJ_G0015242.1 mouse_genomes_project 1 22817551 22968186 - Adgrb3 protein_coding retained_intron MGP_CASTEiJ_T0018409.1 MGP_CASTEiJ_G0015242.1 mouse_genomes_project 1 22842137 22968132 - Adgrb3 protein_coding retained_intron MGP_CASTEiJ_T0018410.1 MGP_CASTEiJ_G0015242.1 mouse_genomes_project 1 22957149 22967913 - Adgrb3 protein_coding retained_intron MGP_CASTEiJ_T0018411.1 MGP_CASTEiJ_G0015242.1 mouse_genomes_project 1 23130060 23307875 - MGP_CASTEiJ_P0018411 Adgrb3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0018412.1 MGP_CASTEiJ_G0015242.1 mouse_genomes_project 1 23232225 23578717 - Adgrb3 protein_coding retained_intron MGP_CASTEiJ_T0100317.1 MGP_CASTEiJ_G0037230.1 mouse_genomes_project 1 147680420 147680547 - Gm25460 snoRNA snoRNA MGP_CASTEiJ_T0016317.1 MGP_CASTEiJ_G0014432.1 mouse_genomes_project 1 152617416 152643301 - Ptgs2os processed_transcript antisense MGP_CASTEiJ_T0016318.1 MGP_CASTEiJ_G0014432.1 mouse_genomes_project 1 152641669 152643447 - Ptgs2os processed_transcript retained_intron MGP_CASTEiJ_T0019533.1 MGP_CASTEiJ_G0015453.1 mouse_genomes_project 1 64205599 64230663 - MGP_CASTEiJ_P0019533 Akr1cl protein_coding protein_coding MGP_CASTEiJ_T0019534.1 MGP_CASTEiJ_G0015453.1 mouse_genomes_project 1 64205599 64230675 - MGP_CASTEiJ_P0019534 Akr1cl protein_coding protein_coding MGP_CASTEiJ_T0019535.1 MGP_CASTEiJ_G0015453.1 mouse_genomes_project 1 64208593 64210683 - Akr1cl protein_coding retained_intron MGP_CASTEiJ_T0019536.1 MGP_CASTEiJ_G0015453.1 mouse_genomes_project 1 64210203 64230602 - MGP_CASTEiJ_P0019536 Akr1cl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019537.1 MGP_CASTEiJ_G0015453.1 mouse_genomes_project 1 64225864 64230648 - Akr1cl protein_coding processed_transcript MGP_CASTEiJ_T0019538.1 MGP_CASTEiJ_G0015453.1 mouse_genomes_project 1 64227530 64230664 - Akr1cl protein_coding retained_intron MGP_CASTEiJ_T0011583.1 MGP_CASTEiJ_G0009746.1 mouse_genomes_project 1 7890254 7891696 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000739.1 MGP_CASTEiJ_G0000681.1 mouse_genomes_project 1 187168063 187170044 + TEC TEC MGP_CASTEiJ_T0000640.1 MGP_CASTEiJ_G0000584.1 mouse_genomes_project 1 151940091 151941546 - TEC TEC MGP_CASTEiJ_T0016286.1 MGP_CASTEiJ_G0014422.1 mouse_genomes_project 1 90270027 90271656 + D130058E05Rik processed_transcript antisense MGP_CASTEiJ_T0016287.1 MGP_CASTEiJ_G0014422.1 mouse_genomes_project 1 90270054 90273085 + D130058E05Rik processed_transcript retained_intron MGP_CASTEiJ_T0021657.1 MGP_CASTEiJ_G0015886.1 mouse_genomes_project 1 137881968 137914145 - MGP_CASTEiJ_P0021657 Mroh3 protein_coding protein_coding MGP_CASTEiJ_T0021658.1 MGP_CASTEiJ_G0015886.1 mouse_genomes_project 1 137882146 137921924 - MGP_CASTEiJ_P0021658 Mroh3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021659.1 MGP_CASTEiJ_G0015886.1 mouse_genomes_project 1 137882146 137893077 - MGP_CASTEiJ_P0021659 Mroh3 protein_coding protein_coding MGP_CASTEiJ_T0021660.1 MGP_CASTEiJ_G0015886.1 mouse_genomes_project 1 137882156 137883901 - Mroh3 protein_coding retained_intron MGP_CASTEiJ_T0021661.1 MGP_CASTEiJ_G0015886.1 mouse_genomes_project 1 137893149 137905016 - MGP_CASTEiJ_P0021661 Mroh3 protein_coding protein_coding MGP_CASTEiJ_T0011842.1 MGP_CASTEiJ_G0010005.1 mouse_genomes_project 1 106531505 106532044 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020934.1 MGP_CASTEiJ_G0015737.1 mouse_genomes_project 1 112642171 112648242 - Dsel protein_coding processed_transcript MGP_CASTEiJ_T0020935.1 MGP_CASTEiJ_G0015737.1 mouse_genomes_project 1 112642175 112648392 - MGP_CASTEiJ_P0020935 Dsel protein_coding protein_coding MGP_CASTEiJ_T0020936.1 MGP_CASTEiJ_G0015737.1 mouse_genomes_project 1 112646794 112648357 - Dsel protein_coding processed_transcript MGP_CASTEiJ_T0020937.1 MGP_CASTEiJ_G0015737.1 mouse_genomes_project 1 112647569 112648354 - Dsel protein_coding processed_transcript MGP_CASTEiJ_T0011635.1 MGP_CASTEiJ_G0009798.1 mouse_genomes_project 1 29515596 29517457 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099095.1 MGP_CASTEiJ_G0036008.1 mouse_genomes_project 1 69335178 69335308 - Gm23879 snRNA snRNA MGP_CASTEiJ_T0000413.1 MGP_CASTEiJ_G0000359.1 mouse_genomes_project 1 35106916 35110597 - TEC TEC MGP_CASTEiJ_T0011748.1 MGP_CASTEiJ_G0009911.1 mouse_genomes_project 1 61167216 61167474 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100338.1 MGP_CASTEiJ_G0037251.1 mouse_genomes_project 1 174856217 174856308 + Gm25151 snoRNA snoRNA MGP_CASTEiJ_T0000661.1 MGP_CASTEiJ_G0000605.1 mouse_genomes_project 1 159754076 159756733 - TEC TEC MGP_CASTEiJ_T0018940.1 MGP_CASTEiJ_G0015345.1 mouse_genomes_project 1 43976249 44113172 - MGP_CASTEiJ_P0018940 Col5a2 protein_coding protein_coding MGP_CASTEiJ_T0018941.1 MGP_CASTEiJ_G0015345.1 mouse_genomes_project 1 43993701 43998261 - Col5a2 protein_coding retained_intron MGP_CASTEiJ_T0018942.1 MGP_CASTEiJ_G0015345.1 mouse_genomes_project 1 44018734 44113172 - Col5a2 protein_coding retained_intron MGP_CASTEiJ_T0018943.1 MGP_CASTEiJ_G0015345.1 mouse_genomes_project 1 44021855 44029070 - Col5a2 protein_coding retained_intron MGP_CASTEiJ_T0005654.1 MGP_CASTEiJ_G0004753.1 mouse_genomes_project 1 80269707 80303606 + 1700016L21Rik lincRNA lincRNA MGP_CASTEiJ_T0005655.1 MGP_CASTEiJ_G0004753.1 mouse_genomes_project 1 80269715 80307827 + 1700016L21Rik lincRNA lincRNA MGP_CASTEiJ_T0010916.1 MGP_CASTEiJ_G0009104.1 mouse_genomes_project 1 49184342 49184656 + Gm25843 misc_RNA misc_RNA MGP_CASTEiJ_T0000637.1 MGP_CASTEiJ_G0000581.1 mouse_genomes_project 1 149770704 149771917 - TEC TEC MGP_CASTEiJ_T0020754.1 MGP_CASTEiJ_G0015693.1 mouse_genomes_project 1 94024831 94142157 + MGP_CASTEiJ_P0020754 Farp2 protein_coding protein_coding MGP_CASTEiJ_T0020755.1 MGP_CASTEiJ_G0015693.1 mouse_genomes_project 1 94024864 94101436 + MGP_CASTEiJ_P0020755 Farp2 protein_coding protein_coding MGP_CASTEiJ_T0019221.1 MGP_CASTEiJ_G0015397.1 mouse_genomes_project 1 56888565 56962619 + MGP_CASTEiJ_P0019221 Aox1 protein_coding protein_coding MGP_CASTEiJ_T0019222.1 MGP_CASTEiJ_G0015397.1 mouse_genomes_project 1 56888598 56927727 + Aox1 protein_coding retained_intron MGP_CASTEiJ_T0009238.1 MGP_CASTEiJ_G0007426.1 mouse_genomes_project 1 34665689 34665830 + miRNA miRNA MGP_CASTEiJ_T0005594.1 MGP_CASTEiJ_G0004708.1 mouse_genomes_project 1 59799148 59820889 + 2310016D23Rik lincRNA lincRNA MGP_CASTEiJ_T0000732.1 MGP_CASTEiJ_G0000675.1 mouse_genomes_project 1 186399609 186402870 - TEC TEC MGP_CASTEiJ_T0005889.1 MGP_CASTEiJ_G0004943.1 mouse_genomes_project 1 195950786 195952766 + Gm31373 lincRNA lincRNA MGP_CASTEiJ_T0009253.1 MGP_CASTEiJ_G0007441.1 mouse_genomes_project 1 63225269 63225333 - Mir6899 miRNA miRNA MGP_CASTEiJ_T0002735.1 MGP_CASTEiJ_G0002597.1 mouse_genomes_project 1 74879626 74886253 + Gm28294 antisense antisense MGP_CASTEiJ_T0011812.1 MGP_CASTEiJ_G0009975.1 mouse_genomes_project 1 91896677 91896870 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000602.1 MGP_CASTEiJ_G0000547.1 mouse_genomes_project 1 136033349 136034333 - TEC TEC MGP_CASTEiJ_T0009261.1 MGP_CASTEiJ_G0007449.1 mouse_genomes_project 1 74832596 74832712 - Gm27943 miRNA miRNA MGP_CASTEiJ_T0005659.1 MGP_CASTEiJ_G0004757.1 mouse_genomes_project 1 85894495 85909940 - Gm28100 lincRNA lincRNA MGP_CASTEiJ_T0010912.1 MGP_CASTEiJ_G0009100.1 mouse_genomes_project 1 30734453 30734743 + Gm23024 misc_RNA misc_RNA MGP_CASTEiJ_T0023468.1 MGP_CASTEiJ_G0016275.1 mouse_genomes_project 1 195017938 195071891 - MGP_CASTEiJ_P0023468 Prox1 protein_coding protein_coding MGP_CASTEiJ_T0023469.1 MGP_CASTEiJ_G0016275.1 mouse_genomes_project 1 195021017 195061496 - MGP_CASTEiJ_P0023469 Prox1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023470.1 MGP_CASTEiJ_G0016275.1 mouse_genomes_project 1 195022354 195070572 - MGP_CASTEiJ_P0023470 Prox1 protein_coding protein_coding MGP_CASTEiJ_T0023471.1 MGP_CASTEiJ_G0016275.1 mouse_genomes_project 1 195022911 195071857 - MGP_CASTEiJ_P0023471 Prox1 protein_coding protein_coding MGP_CASTEiJ_T0018670.1 MGP_CASTEiJ_G0015289.1 mouse_genomes_project 1 35617056 35630514 - MGP_CASTEiJ_P0018670 Coa5 protein_coding protein_coding MGP_CASTEiJ_T0018671.1 MGP_CASTEiJ_G0015289.1 mouse_genomes_project 1 35628922 35630411 - Coa5 protein_coding retained_intron MGP_CASTEiJ_T0021284.1 MGP_CASTEiJ_G0015809.1 mouse_genomes_project 1 133227379 133230158 + Slc41a1 protein_coding processed_transcript MGP_CASTEiJ_T0021285.1 MGP_CASTEiJ_G0015809.1 mouse_genomes_project 1 133227863 133250743 + MGP_CASTEiJ_P0021285 Slc41a1 protein_coding protein_coding MGP_CASTEiJ_T0021286.1 MGP_CASTEiJ_G0015809.1 mouse_genomes_project 1 133244747 133248520 + Slc41a1 protein_coding retained_intron MGP_CASTEiJ_T0021549.1 MGP_CASTEiJ_G0015865.1 mouse_genomes_project 1 136770021 136782457 + MGP_CASTEiJ_P0021549 Ptpn7 protein_coding protein_coding MGP_CASTEiJ_T0021550.1 MGP_CASTEiJ_G0015865.1 mouse_genomes_project 1 136770046 136783755 + MGP_CASTEiJ_P0021550 Ptpn7 protein_coding protein_coding MGP_CASTEiJ_T0021551.1 MGP_CASTEiJ_G0015865.1 mouse_genomes_project 1 136770629 136777337 + Ptpn7 protein_coding retained_intron MGP_CASTEiJ_T0021552.1 MGP_CASTEiJ_G0015865.1 mouse_genomes_project 1 136770630 136783381 + MGP_CASTEiJ_P0021552 Ptpn7 protein_coding protein_coding MGP_CASTEiJ_T0005745.1 MGP_CASTEiJ_G0004830.1 mouse_genomes_project 1 135135943 135139962 + Gm26706 lincRNA lincRNA MGP_CASTEiJ_T0098796.1 MGP_CASTEiJ_G0035726.1 mouse_genomes_project 1 137074271 137078836 - Gm28277 sense_intronic sense_intronic MGP_CASTEiJ_T0021809.1 MGP_CASTEiJ_G0015917.1 mouse_genomes_project 1 148905561 149348840 + MGP_CASTEiJ_P0021809 Brinp3 protein_coding protein_coding MGP_CASTEiJ_T0021810.1 MGP_CASTEiJ_G0015917.1 mouse_genomes_project 1 148908415 149187818 + MGP_CASTEiJ_P0021810 Brinp3 protein_coding protein_coding MGP_CASTEiJ_T0021811.1 MGP_CASTEiJ_G0015917.1 mouse_genomes_project 1 148908488 149348841 + MGP_CASTEiJ_P0021811 Brinp3 protein_coding protein_coding MGP_CASTEiJ_T0021812.1 MGP_CASTEiJ_G0015917.1 mouse_genomes_project 1 148908505 149348835 + MGP_CASTEiJ_P0021812 Brinp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021813.1 MGP_CASTEiJ_G0015917.1 mouse_genomes_project 1 148908539 148929596 + Brinp3 protein_coding retained_intron MGP_CASTEiJ_T0099115.1 MGP_CASTEiJ_G0036028.1 mouse_genomes_project 1 131962110 131962217 - Gm23623 snRNA snRNA MGP_CASTEiJ_T0000422.1 MGP_CASTEiJ_G0000368.1 mouse_genomes_project 1 38415648 38416985 - TEC TEC MGP_CASTEiJ_T0000576.1 MGP_CASTEiJ_G0000522.1 mouse_genomes_project 1 128602116 128602659 + TEC TEC MGP_CASTEiJ_T0019936.1 MGP_CASTEiJ_G0015531.1 mouse_genomes_project 1 74833841 74838610 + MGP_CASTEiJ_P0019936 Stk16 protein_coding protein_coding MGP_CASTEiJ_T0019937.1 MGP_CASTEiJ_G0015531.1 mouse_genomes_project 1 74833849 74834875 + Stk16 protein_coding retained_intron MGP_CASTEiJ_T0019938.1 MGP_CASTEiJ_G0015531.1 mouse_genomes_project 1 74833851 74835239 + MGP_CASTEiJ_P0019938 Stk16 protein_coding protein_coding MGP_CASTEiJ_T0019939.1 MGP_CASTEiJ_G0015531.1 mouse_genomes_project 1 74833873 74837246 + MGP_CASTEiJ_P0019939 Stk16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019940.1 MGP_CASTEiJ_G0015531.1 mouse_genomes_project 1 74833877 74835238 + MGP_CASTEiJ_P0019940 Stk16 protein_coding protein_coding MGP_CASTEiJ_T0019941.1 MGP_CASTEiJ_G0015531.1 mouse_genomes_project 1 74833879 74837243 + Stk16 protein_coding retained_intron MGP_CASTEiJ_T0019942.1 MGP_CASTEiJ_G0015531.1 mouse_genomes_project 1 74833883 74836141 + Stk16 protein_coding processed_transcript MGP_CASTEiJ_T0019943.1 MGP_CASTEiJ_G0015531.1 mouse_genomes_project 1 74834057 74836232 + MGP_CASTEiJ_P0019943 Stk16 protein_coding protein_coding MGP_CASTEiJ_T0019944.1 MGP_CASTEiJ_G0015531.1 mouse_genomes_project 1 74834243 74836955 + MGP_CASTEiJ_P0019944 Stk16 protein_coding protein_coding MGP_CASTEiJ_T0019945.1 MGP_CASTEiJ_G0015531.1 mouse_genomes_project 1 74834965 74836191 + Stk16 protein_coding retained_intron MGP_CASTEiJ_T0019946.1 MGP_CASTEiJ_G0015531.1 mouse_genomes_project 1 74835006 74836097 + Stk16 protein_coding retained_intron MGP_CASTEiJ_T0019947.1 MGP_CASTEiJ_G0015531.1 mouse_genomes_project 1 74835008 74835409 + Stk16 protein_coding retained_intron MGP_CASTEiJ_T0019948.1 MGP_CASTEiJ_G0015531.1 mouse_genomes_project 1 74835402 74836159 + Stk16 protein_coding retained_intron MGP_CASTEiJ_T0019949.1 MGP_CASTEiJ_G0015531.1 mouse_genomes_project 1 74835627 74837020 + Stk16 protein_coding processed_transcript MGP_CASTEiJ_T0019950.1 MGP_CASTEiJ_G0015531.1 mouse_genomes_project 1 74835635 74836917 + Stk16 protein_coding retained_intron MGP_CASTEiJ_T0019951.1 MGP_CASTEiJ_G0015531.1 mouse_genomes_project 1 74836064 74837035 + Stk16 protein_coding retained_intron MGP_CASTEiJ_T0000420.1 MGP_CASTEiJ_G0000366.1 mouse_genomes_project 1 37277551 37279191 + TEC TEC MGP_CASTEiJ_T0101931.1 MGP_CASTEiJ_G0038656.1 mouse_genomes_project 1 105783171 105783398 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099128.1 MGP_CASTEiJ_G0036041.1 mouse_genomes_project 1 153628294 153628401 - Gm22756 snRNA snRNA MGP_CASTEiJ_T0005896.1 MGP_CASTEiJ_G0004949.1 mouse_genomes_project 1 197834451 197835494 + 1700065J18Rik lincRNA lincRNA MGP_CASTEiJ_T0005897.1 MGP_CASTEiJ_G0004949.1 mouse_genomes_project 1 197834461 197835500 + 1700065J18Rik lincRNA lincRNA MGP_CASTEiJ_T0022885.1 MGP_CASTEiJ_G0016130.1 mouse_genomes_project 1 176014791 176052199 + MGP_CASTEiJ_P0022885 Kcnj10 protein_coding protein_coding MGP_CASTEiJ_T0019952.1 MGP_CASTEiJ_G0015532.1 mouse_genomes_project 1 74837231 74842299 - MGP_CASTEiJ_P0019952 Tuba4a protein_coding protein_coding MGP_CASTEiJ_T0019953.1 MGP_CASTEiJ_G0015532.1 mouse_genomes_project 1 74837975 74841628 - MGP_CASTEiJ_P0019953 Tuba4a protein_coding protein_coding MGP_CASTEiJ_T0019954.1 MGP_CASTEiJ_G0015532.1 mouse_genomes_project 1 74838615 74840444 - MGP_CASTEiJ_P0019954 Tuba4a protein_coding protein_coding MGP_CASTEiJ_T0019955.1 MGP_CASTEiJ_G0015532.1 mouse_genomes_project 1 74838959 74840424 - MGP_CASTEiJ_P0019955 Tuba4a protein_coding protein_coding MGP_CASTEiJ_T0019956.1 MGP_CASTEiJ_G0015532.1 mouse_genomes_project 1 74839438 74842248 - Tuba4a protein_coding retained_intron MGP_CASTEiJ_T0019957.1 MGP_CASTEiJ_G0015532.1 mouse_genomes_project 1 74839860 74842870 - MGP_CASTEiJ_P0019957 Tuba4a protein_coding protein_coding MGP_CASTEiJ_T0019958.1 MGP_CASTEiJ_G0015532.1 mouse_genomes_project 1 74839892 74841893 - MGP_CASTEiJ_P0019958 Tuba4a protein_coding protein_coding MGP_CASTEiJ_T0019959.1 MGP_CASTEiJ_G0015532.1 mouse_genomes_project 1 74839916 74841893 - MGP_CASTEiJ_P0019959 Tuba4a protein_coding protein_coding MGP_CASTEiJ_T0011828.1 MGP_CASTEiJ_G0009991.1 mouse_genomes_project 1 101183013 101183679 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023494.1 MGP_CASTEiJ_G0016279.1 mouse_genomes_project 1 195966149 195973025 - Mfsd7b protein_coding retained_intron MGP_CASTEiJ_T0023495.1 MGP_CASTEiJ_G0016279.1 mouse_genomes_project 1 195966149 195986743 - MGP_CASTEiJ_P0023495 Mfsd7b protein_coding protein_coding MGP_CASTEiJ_T0023496.1 MGP_CASTEiJ_G0016279.1 mouse_genomes_project 1 195966151 195986552 - MGP_CASTEiJ_P0023496 Mfsd7b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023497.1 MGP_CASTEiJ_G0016279.1 mouse_genomes_project 1 195966152 195968753 - Mfsd7b protein_coding retained_intron MGP_CASTEiJ_T0023498.1 MGP_CASTEiJ_G0016279.1 mouse_genomes_project 1 195974108 195976308 - Mfsd7b protein_coding retained_intron MGP_CASTEiJ_T0023499.1 MGP_CASTEiJ_G0016279.1 mouse_genomes_project 1 195985492 195986709 - MGP_CASTEiJ_P0023499 Mfsd7b protein_coding protein_coding MGP_CASTEiJ_T0022556.1 MGP_CASTEiJ_G0016055.1 mouse_genomes_project 1 170327535 170428597 + MGP_CASTEiJ_P0022556 Fam78b protein_coding protein_coding MGP_CASTEiJ_T0022557.1 MGP_CASTEiJ_G0016055.1 mouse_genomes_project 1 170327535 170428597 + MGP_CASTEiJ_P0022557 Fam78b protein_coding protein_coding MGP_CASTEiJ_T0022558.1 MGP_CASTEiJ_G0016055.1 mouse_genomes_project 1 170327550 170426381 + MGP_CASTEiJ_P0022558 Fam78b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022559.1 MGP_CASTEiJ_G0016055.1 mouse_genomes_project 1 170327584 170415575 + MGP_CASTEiJ_P0022559 Fam78b protein_coding protein_coding MGP_CASTEiJ_T0022560.1 MGP_CASTEiJ_G0016055.1 mouse_genomes_project 1 170327698 170426028 + MGP_CASTEiJ_P0022560 Fam78b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022561.1 MGP_CASTEiJ_G0016055.1 mouse_genomes_project 1 170327707 170428304 + MGP_CASTEiJ_P0022561 Fam78b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019985.1 MGP_CASTEiJ_G0015537.1 mouse_genomes_project 1 74939914 74949707 - MGP_CASTEiJ_P0019985 Dnpep protein_coding protein_coding MGP_CASTEiJ_T0019986.1 MGP_CASTEiJ_G0015537.1 mouse_genomes_project 1 74939914 74949685 - MGP_CASTEiJ_P0019986 Dnpep protein_coding protein_coding MGP_CASTEiJ_T0019987.1 MGP_CASTEiJ_G0015537.1 mouse_genomes_project 1 74939958 74949036 - MGP_CASTEiJ_P0019987 Dnpep protein_coding protein_coding MGP_CASTEiJ_T0019988.1 MGP_CASTEiJ_G0015537.1 mouse_genomes_project 1 74940586 74948988 - MGP_CASTEiJ_P0019988 Dnpep protein_coding protein_coding MGP_CASTEiJ_T0019989.1 MGP_CASTEiJ_G0015537.1 mouse_genomes_project 1 74940586 74949192 - MGP_CASTEiJ_P0019989 Dnpep protein_coding protein_coding MGP_CASTEiJ_T0019990.1 MGP_CASTEiJ_G0015537.1 mouse_genomes_project 1 74941204 74945802 - Dnpep protein_coding retained_intron MGP_CASTEiJ_T0019991.1 MGP_CASTEiJ_G0015537.1 mouse_genomes_project 1 74944510 74949457 - Dnpep protein_coding retained_intron MGP_CASTEiJ_T0019992.1 MGP_CASTEiJ_G0015537.1 mouse_genomes_project 1 74946406 74948846 - MGP_CASTEiJ_P0019992 Dnpep protein_coding protein_coding MGP_CASTEiJ_T0019993.1 MGP_CASTEiJ_G0015537.1 mouse_genomes_project 1 74946409 74949064 - MGP_CASTEiJ_P0019993 Dnpep protein_coding protein_coding MGP_CASTEiJ_T0019994.1 MGP_CASTEiJ_G0015537.1 mouse_genomes_project 1 74947238 74949356 - MGP_CASTEiJ_P0019994 Dnpep protein_coding protein_coding MGP_CASTEiJ_T0019995.1 MGP_CASTEiJ_G0015537.1 mouse_genomes_project 1 74948021 74949495 - MGP_CASTEiJ_P0019995 Dnpep protein_coding protein_coding MGP_CASTEiJ_T0019996.1 MGP_CASTEiJ_G0015537.1 mouse_genomes_project 1 74948389 74949415 - Dnpep protein_coding retained_intron MGP_CASTEiJ_T0019997.1 MGP_CASTEiJ_G0015537.1 mouse_genomes_project 1 74948412 74950038 - MGP_CASTEiJ_P0019997 Dnpep protein_coding protein_coding MGP_CASTEiJ_T0019998.1 MGP_CASTEiJ_G0015537.1 mouse_genomes_project 1 74948596 74949425 - MGP_CASTEiJ_P0019998 Dnpep protein_coding protein_coding MGP_CASTEiJ_T0002671.1 MGP_CASTEiJ_G0002551.1 mouse_genomes_project 1 32484151 32489399 - Gm28306 antisense antisense MGP_CASTEiJ_T0020903.1 MGP_CASTEiJ_G0015725.1 mouse_genomes_project 1 107588813 107608858 + MGP_CASTEiJ_P0020903 Serpinb13 protein_coding protein_coding MGP_CASTEiJ_T0020904.1 MGP_CASTEiJ_G0015725.1 mouse_genomes_project 1 107588823 107608553 + MGP_CASTEiJ_P0020904 Serpinb13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011726.1 MGP_CASTEiJ_G0009889.1 mouse_genomes_project 1 56364244 56365134 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011608.1 MGP_CASTEiJ_G0009771.1 mouse_genomes_project 1 16898099 16900307 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005743.1 MGP_CASTEiJ_G0004828.1 mouse_genomes_project 1 133706991 133712806 - Gm29630 lincRNA lincRNA MGP_CASTEiJ_T0009243.1 MGP_CASTEiJ_G0007431.1 mouse_genomes_project 1 43909001 43909142 + miRNA miRNA MGP_CASTEiJ_T0000441.1 MGP_CASTEiJ_G0000387.1 mouse_genomes_project 1 54348539 54350135 + TEC TEC MGP_CASTEiJ_T0011852.1 MGP_CASTEiJ_G0010015.1 mouse_genomes_project 1 110405712 110405899 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005882.1 MGP_CASTEiJ_G0004937.1 mouse_genomes_project 1 191631126 191634287 + 1700023G09Rik lincRNA lincRNA MGP_CASTEiJ_T0005883.1 MGP_CASTEiJ_G0004937.1 mouse_genomes_project 1 191631155 191633505 + 1700023G09Rik lincRNA lincRNA MGP_CASTEiJ_T0011938.1 MGP_CASTEiJ_G0010101.1 mouse_genomes_project 1 152562486 152564551 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012001.1 MGP_CASTEiJ_G0010164.1 mouse_genomes_project 1 180890527 180891362 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098731.1 MGP_CASTEiJ_G0035662.1 mouse_genomes_project 1 87828729 87828994 + Scarna6 scaRNA scaRNA MGP_CASTEiJ_T0002819.1 MGP_CASTEiJ_G0002664.1 mouse_genomes_project 1 161473570 161546767 - Gm37679 antisense antisense MGP_CASTEiJ_T0023519.1 MGP_CASTEiJ_G0016284.1 mouse_genomes_project 1 196136627 196138864 - MGP_CASTEiJ_P0023519 Fam71a protein_coding protein_coding MGP_CASTEiJ_T0009227.1 MGP_CASTEiJ_G0007415.1 mouse_genomes_project 1 18240055 18240174 + Mir133b miRNA miRNA MGP_CASTEiJ_T0021165.1 MGP_CASTEiJ_G0015779.1 mouse_genomes_project 1 129563288 129593121 - MGP_CASTEiJ_P0021165 Mcm6 protein_coding protein_coding MGP_CASTEiJ_T0021166.1 MGP_CASTEiJ_G0015779.1 mouse_genomes_project 1 129563291 129593104 - MGP_CASTEiJ_P0021166 Mcm6 protein_coding protein_coding MGP_CASTEiJ_T0021167.1 MGP_CASTEiJ_G0015779.1 mouse_genomes_project 1 129571103 129579655 - Mcm6 protein_coding retained_intron MGP_CASTEiJ_T0021168.1 MGP_CASTEiJ_G0015779.1 mouse_genomes_project 1 129573284 129577076 - Mcm6 protein_coding retained_intron MGP_CASTEiJ_T0009247.1 MGP_CASTEiJ_G0007435.1 mouse_genomes_project 1 53516716 53516821 + Gm24053 miRNA miRNA MGP_CASTEiJ_T0000698.1 MGP_CASTEiJ_G0000642.1 mouse_genomes_project 1 171740234 171741934 - TEC TEC MGP_CASTEiJ_T0011657.1 MGP_CASTEiJ_G0009820.1 mouse_genomes_project 1 34086815 34087734 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000342.1 MGP_CASTEiJ_G0000291.1 mouse_genomes_project 1 8785430 8787901 + TEC TEC MGP_CASTEiJ_T0019309.1 MGP_CASTEiJ_G0015413.1 mouse_genomes_project 1 57922856 57972329 - MGP_CASTEiJ_P0019309 Als2cr11 protein_coding protein_coding MGP_CASTEiJ_T0019310.1 MGP_CASTEiJ_G0015413.1 mouse_genomes_project 1 57943182 57960623 - Als2cr11 protein_coding processed_transcript MGP_CASTEiJ_T0022509.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169178249 169252157 - MGP_CASTEiJ_P0022509 Pou2f1 protein_coding protein_coding MGP_CASTEiJ_T0022510.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169178249 169319355 - MGP_CASTEiJ_P0022510 Pou2f1 protein_coding protein_coding MGP_CASTEiJ_T0022511.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169188510 169228941 - MGP_CASTEiJ_P0022511 Pou2f1 protein_coding protein_coding MGP_CASTEiJ_T0022512.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169188544 169319295 - MGP_CASTEiJ_P0022512 Pou2f1 protein_coding protein_coding MGP_CASTEiJ_T0022513.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169188544 169319299 - MGP_CASTEiJ_P0022513 Pou2f1 protein_coding protein_coding MGP_CASTEiJ_T0022514.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169188548 169252157 - MGP_CASTEiJ_P0022514 Pou2f1 protein_coding protein_coding MGP_CASTEiJ_T0022515.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169188574 169193247 - MGP_CASTEiJ_P0022515 Pou2f1 protein_coding protein_coding MGP_CASTEiJ_T0022516.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169188670 169205686 - Pou2f1 protein_coding retained_intron MGP_CASTEiJ_T0022517.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169188694 169319306 - MGP_CASTEiJ_P0022517 Pou2f1 protein_coding protein_coding MGP_CASTEiJ_T0022518.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169188768 169252109 - MGP_CASTEiJ_P0022518 Pou2f1 protein_coding protein_coding MGP_CASTEiJ_T0022519.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169188824 169248895 - MGP_CASTEiJ_P0022519 Pou2f1 protein_coding protein_coding MGP_CASTEiJ_T0022520.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169193013 169252220 - Pou2f1 protein_coding retained_intron MGP_CASTEiJ_T0022521.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169193168 169252148 - Pou2f1 protein_coding retained_intron MGP_CASTEiJ_T0022522.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169204625 169319292 - Pou2f1 protein_coding retained_intron MGP_CASTEiJ_T0022523.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169226980 169319290 - MGP_CASTEiJ_P0022523 Pou2f1 protein_coding protein_coding MGP_CASTEiJ_T0022524.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169246844 169319306 - Pou2f1 protein_coding retained_intron MGP_CASTEiJ_T0022525.1 MGP_CASTEiJ_G0016045.1 mouse_genomes_project 1 169248874 169319286 - MGP_CASTEiJ_P0022525 Pou2f1 protein_coding protein_coding MGP_CASTEiJ_T0018976.1 MGP_CASTEiJ_G0015355.1 mouse_genomes_project 1 50153086 50165623 - MGP_CASTEiJ_P0018976 Nabp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018977.1 MGP_CASTEiJ_G0015355.1 mouse_genomes_project 1 50153231 50165290 - MGP_CASTEiJ_P0018977 Nabp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018978.1 MGP_CASTEiJ_G0015355.1 mouse_genomes_project 1 50155912 50165623 - MGP_CASTEiJ_P0018978 Nabp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018979.1 MGP_CASTEiJ_G0015355.1 mouse_genomes_project 1 50156728 50165623 - MGP_CASTEiJ_P0018979 Nabp1 protein_coding protein_coding MGP_CASTEiJ_T0018980.1 MGP_CASTEiJ_G0015355.1 mouse_genomes_project 1 50157098 50165623 - MGP_CASTEiJ_P0018980 Nabp1 protein_coding protein_coding MGP_CASTEiJ_T0018981.1 MGP_CASTEiJ_G0015355.1 mouse_genomes_project 1 50158045 50165623 - MGP_CASTEiJ_P0018981 Nabp1 protein_coding protein_coding MGP_CASTEiJ_T0018982.1 MGP_CASTEiJ_G0015355.1 mouse_genomes_project 1 50158367 50165649 - MGP_CASTEiJ_P0018982 Nabp1 protein_coding protein_coding MGP_CASTEiJ_T0018983.1 MGP_CASTEiJ_G0015355.1 mouse_genomes_project 1 50158380 50165623 - MGP_CASTEiJ_P0018983 Nabp1 protein_coding protein_coding MGP_CASTEiJ_T0018984.1 MGP_CASTEiJ_G0015355.1 mouse_genomes_project 1 50158580 50160635 - Nabp1 protein_coding retained_intron MGP_CASTEiJ_T0018985.1 MGP_CASTEiJ_G0015355.1 mouse_genomes_project 1 50162813 50165623 - Nabp1 protein_coding retained_intron MGP_CASTEiJ_T0020911.1 MGP_CASTEiJ_G0015730.1 mouse_genomes_project 1 108046258 108059249 + MGP_CASTEiJ_P0020911 Serpinb11 protein_coding protein_coding MGP_CASTEiJ_T0020912.1 MGP_CASTEiJ_G0015730.1 mouse_genomes_project 1 108046988 108065541 + MGP_CASTEiJ_P0020912 Serpinb11 protein_coding protein_coding MGP_CASTEiJ_T0011892.1 MGP_CASTEiJ_G0010055.1 mouse_genomes_project 1 124259918 124260181 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005874.1 MGP_CASTEiJ_G0004930.1 mouse_genomes_project 1 189667929 189675431 + Gm37662 lincRNA lincRNA MGP_CASTEiJ_T0005660.1 MGP_CASTEiJ_G0004758.1 mouse_genomes_project 1 87104035 87104798 + lincRNA lincRNA MGP_CASTEiJ_T0011981.1 MGP_CASTEiJ_G0010144.1 mouse_genomes_project 1 169258872 169260786 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012009.1 MGP_CASTEiJ_G0010172.1 mouse_genomes_project 1 185462495 185463630 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005814.1 MGP_CASTEiJ_G0004885.1 mouse_genomes_project 1 168275678 168277587 + 1700029M03Rik lincRNA lincRNA MGP_CASTEiJ_T0005815.1 MGP_CASTEiJ_G0004885.1 mouse_genomes_project 1 168275680 168276160 + 1700029M03Rik lincRNA lincRNA MGP_CASTEiJ_T0019732.1 MGP_CASTEiJ_G0015493.1 mouse_genomes_project 1 73730379 73756783 + MGP_CASTEiJ_P0019732 Rufy4 protein_coding protein_coding MGP_CASTEiJ_T0019733.1 MGP_CASTEiJ_G0015493.1 mouse_genomes_project 1 73730417 73756333 + MGP_CASTEiJ_P0019733 Rufy4 protein_coding protein_coding MGP_CASTEiJ_T0000771.1 MGP_CASTEiJ_G0000712.1 mouse_genomes_project 1 200112221 200114515 + TEC TEC MGP_CASTEiJ_T0009254.1 MGP_CASTEiJ_G0007442.1 mouse_genomes_project 1 63570176 63570246 + Gm25748 miRNA miRNA MGP_CASTEiJ_T0002820.1 MGP_CASTEiJ_G0002665.1 mouse_genomes_project 1 163045962 163049308 - Gm38039 antisense antisense MGP_CASTEiJ_T0011641.1 MGP_CASTEiJ_G0009804.1 mouse_genomes_project 1 31368294 31370542 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002717.1 MGP_CASTEiJ_G0002586.1 mouse_genomes_project 1 61200562 61205481 - Pard3bos2 antisense antisense MGP_CASTEiJ_T0011663.1 MGP_CASTEiJ_G0009826.1 mouse_genomes_project 1 37571879 37572162 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005580.1 MGP_CASTEiJ_G0004697.1 mouse_genomes_project 1 51305744 51316126 - Gm28178 lincRNA lincRNA MGP_CASTEiJ_T0002682.1 MGP_CASTEiJ_G0002560.1 mouse_genomes_project 1 36156386 36175375 + Gm15457 antisense antisense MGP_CASTEiJ_T0009244.1 MGP_CASTEiJ_G0007432.1 mouse_genomes_project 1 45992097 45992202 - Mir6350 miRNA miRNA MGP_CASTEiJ_T0005775.1 MGP_CASTEiJ_G0004855.1 mouse_genomes_project 1 153556539 153560066 + Gm29188 lincRNA lincRNA MGP_CASTEiJ_T0005893.1 MGP_CASTEiJ_G0004946.1 mouse_genomes_project 1 196258239 196280967 + Gm37168 lincRNA lincRNA MGP_CASTEiJ_T0000719.1 MGP_CASTEiJ_G0000663.1 mouse_genomes_project 1 181256326 181257122 - TEC TEC MGP_CASTEiJ_T0011806.1 MGP_CASTEiJ_G0009969.1 mouse_genomes_project 1 88994189 88994652 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002803.1 MGP_CASTEiJ_G0002651.1 mouse_genomes_project 1 148830748 148905753 - Gm29514 antisense antisense MGP_CASTEiJ_T0002804.1 MGP_CASTEiJ_G0002651.1 mouse_genomes_project 1 148841440 148905862 - Gm29514 antisense antisense MGP_CASTEiJ_T0000373.1 MGP_CASTEiJ_G0000320.1 mouse_genomes_project 1 23033752 23037119 - TEC TEC MGP_CASTEiJ_T0000462.1 MGP_CASTEiJ_G0000408.1 mouse_genomes_project 1 62380906 62381385 - TEC TEC MGP_CASTEiJ_T0000648.1 MGP_CASTEiJ_G0000592.1 mouse_genomes_project 1 155657075 155657514 + TEC TEC MGP_CASTEiJ_T0011968.1 MGP_CASTEiJ_G0010131.1 mouse_genomes_project 1 164484583 164485780 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018953.1 MGP_CASTEiJ_G0015347.1 mouse_genomes_project 1 44510219 44510968 - Gm5269 protein_coding translated_processed_pseudogene MGP_CASTEiJ_T0018954.1 MGP_CASTEiJ_G0015347.1 mouse_genomes_project 1 44510635 44510773 - MGP_CASTEiJ_P0018954 Gm5269 protein_coding protein_coding MGP_CASTEiJ_T0018445.1 MGP_CASTEiJ_G0015251.1 mouse_genomes_project 1 30542135 30544214 - MGP_CASTEiJ_P0018445 protein_coding protein_coding MGP_CASTEiJ_T0100276.1 MGP_CASTEiJ_G0037189.1 mouse_genomes_project 1 58632689 58632776 + Snord70 snoRNA snoRNA MGP_CASTEiJ_T0019627.1 MGP_CASTEiJ_G0015472.1 mouse_genomes_project 1 66395839 66515777 + MGP_CASTEiJ_P0019627 Cps1 protein_coding protein_coding MGP_CASTEiJ_T0019628.1 MGP_CASTEiJ_G0015472.1 mouse_genomes_project 1 66422356 66519635 + MGP_CASTEiJ_P0019628 Cps1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022051.1 MGP_CASTEiJ_G0015962.1 mouse_genomes_project 1 158660298 158663704 - Qsox1 protein_coding retained_intron MGP_CASTEiJ_T0022052.1 MGP_CASTEiJ_G0015962.1 mouse_genomes_project 1 158662438 158696905 - MGP_CASTEiJ_P0022052 Qsox1 protein_coding protein_coding MGP_CASTEiJ_T0022053.1 MGP_CASTEiJ_G0015962.1 mouse_genomes_project 1 158662439 158696867 - MGP_CASTEiJ_P0022053 Qsox1 protein_coding protein_coding MGP_CASTEiJ_T0022054.1 MGP_CASTEiJ_G0015962.1 mouse_genomes_project 1 158662442 158696860 - MGP_CASTEiJ_P0022054 Qsox1 protein_coding protein_coding MGP_CASTEiJ_T0022055.1 MGP_CASTEiJ_G0015962.1 mouse_genomes_project 1 158664199 158666055 - Qsox1 protein_coding processed_transcript MGP_CASTEiJ_T0022056.1 MGP_CASTEiJ_G0015962.1 mouse_genomes_project 1 158678234 158696836 - Qsox1 protein_coding retained_intron MGP_CASTEiJ_T0022057.1 MGP_CASTEiJ_G0015962.1 mouse_genomes_project 1 158678408 158679483 - Qsox1 protein_coding retained_intron MGP_CASTEiJ_T0022058.1 MGP_CASTEiJ_G0015962.1 mouse_genomes_project 1 158685472 158696854 - Qsox1 protein_coding retained_intron MGP_CASTEiJ_T0019693.1 MGP_CASTEiJ_G0015485.1 mouse_genomes_project 1 71954108 72068379 - MGP_CASTEiJ_P0019693 March4 protein_coding protein_coding MGP_CASTEiJ_T0022119.1 MGP_CASTEiJ_G0015973.1 mouse_genomes_project 1 159566702 159612369 - MGP_CASTEiJ_P0022119 Fam20b protein_coding protein_coding MGP_CASTEiJ_T0022120.1 MGP_CASTEiJ_G0015973.1 mouse_genomes_project 1 159566741 159612383 - MGP_CASTEiJ_P0022120 Fam20b protein_coding protein_coding MGP_CASTEiJ_T0022121.1 MGP_CASTEiJ_G0015973.1 mouse_genomes_project 1 159569539 159612456 - MGP_CASTEiJ_P0022121 Fam20b protein_coding unknown_likely_coding MGP_CASTEiJ_T0022122.1 MGP_CASTEiJ_G0015973.1 mouse_genomes_project 1 159575499 159591099 - Fam20b protein_coding retained_intron MGP_CASTEiJ_T0022123.1 MGP_CASTEiJ_G0015973.1 mouse_genomes_project 1 159590944 159596002 - Fam20b protein_coding processed_transcript MGP_CASTEiJ_T0022124.1 MGP_CASTEiJ_G0015973.1 mouse_genomes_project 1 159593849 159610270 - Fam20b protein_coding retained_intron MGP_CASTEiJ_T0022918.1 MGP_CASTEiJ_G0016138.1 mouse_genomes_project 1 176291208 176297092 - MGP_CASTEiJ_P0022918 Fcrl6 protein_coding protein_coding MGP_CASTEiJ_T0022919.1 MGP_CASTEiJ_G0016138.1 mouse_genomes_project 1 176292115 176297088 - Fcrl6 protein_coding retained_intron MGP_CASTEiJ_T0022920.1 MGP_CASTEiJ_G0016138.1 mouse_genomes_project 1 176292554 176297092 - Fcrl6 protein_coding retained_intron MGP_CASTEiJ_T0019981.1 MGP_CASTEiJ_G0015536.1 mouse_genomes_project 1 74901614 74909013 - MGP_CASTEiJ_P0019981 Resp18 protein_coding protein_coding MGP_CASTEiJ_T0019982.1 MGP_CASTEiJ_G0015536.1 mouse_genomes_project 1 74901616 74903675 - Resp18 protein_coding retained_intron MGP_CASTEiJ_T0019983.1 MGP_CASTEiJ_G0015536.1 mouse_genomes_project 1 74901726 74908914 - MGP_CASTEiJ_P0019983 Resp18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019984.1 MGP_CASTEiJ_G0015536.1 mouse_genomes_project 1 74903481 74908882 - Resp18 protein_coding retained_intron MGP_CASTEiJ_T0019318.1 MGP_CASTEiJ_G0015415.1 mouse_genomes_project 1 57996452 58035175 - MGP_CASTEiJ_P0019318 Mpp4 protein_coding protein_coding MGP_CASTEiJ_T0019319.1 MGP_CASTEiJ_G0015415.1 mouse_genomes_project 1 57996452 58038142 - MGP_CASTEiJ_P0019319 Mpp4 protein_coding protein_coding MGP_CASTEiJ_T0019320.1 MGP_CASTEiJ_G0015415.1 mouse_genomes_project 1 57996452 58038142 - MGP_CASTEiJ_P0019320 Mpp4 protein_coding protein_coding MGP_CASTEiJ_T0019321.1 MGP_CASTEiJ_G0015415.1 mouse_genomes_project 1 57996452 58039888 - MGP_CASTEiJ_P0019321 Mpp4 protein_coding protein_coding MGP_CASTEiJ_T0019322.1 MGP_CASTEiJ_G0015415.1 mouse_genomes_project 1 57996453 58023314 - Mpp4 protein_coding processed_transcript MGP_CASTEiJ_T0019323.1 MGP_CASTEiJ_G0015415.1 mouse_genomes_project 1 57996657 58035168 - MGP_CASTEiJ_P0019323 Mpp4 protein_coding protein_coding MGP_CASTEiJ_T0019324.1 MGP_CASTEiJ_G0015415.1 mouse_genomes_project 1 57996766 58038073 - Mpp4 protein_coding retained_intron MGP_CASTEiJ_T0019325.1 MGP_CASTEiJ_G0015415.1 mouse_genomes_project 1 58016887 58029905 - Mpp4 protein_coding retained_intron MGP_CASTEiJ_T0019326.1 MGP_CASTEiJ_G0015415.1 mouse_genomes_project 1 58016889 58028210 - Mpp4 protein_coding retained_intron MGP_CASTEiJ_T0019327.1 MGP_CASTEiJ_G0015415.1 mouse_genomes_project 1 58025684 58038078 - Mpp4 protein_coding retained_intron MGP_CASTEiJ_T0018617.1 MGP_CASTEiJ_G0015282.1 mouse_genomes_project 1 34859714 34861944 + MGP_CASTEiJ_P0018617 Cox5b protein_coding protein_coding MGP_CASTEiJ_T0018618.1 MGP_CASTEiJ_G0015282.1 mouse_genomes_project 1 34859840 34861621 + MGP_CASTEiJ_P0018618 Cox5b protein_coding protein_coding MGP_CASTEiJ_T0018619.1 MGP_CASTEiJ_G0015282.1 mouse_genomes_project 1 34859858 34860781 + Cox5b protein_coding retained_intron MGP_CASTEiJ_T0018620.1 MGP_CASTEiJ_G0015282.1 mouse_genomes_project 1 34859872 34860738 + Cox5b protein_coding retained_intron MGP_CASTEiJ_T0018621.1 MGP_CASTEiJ_G0015282.1 mouse_genomes_project 1 34859874 34861620 + Cox5b protein_coding processed_transcript MGP_CASTEiJ_T0018622.1 MGP_CASTEiJ_G0015282.1 mouse_genomes_project 1 34859918 34861621 + MGP_CASTEiJ_P0018622 Cox5b protein_coding protein_coding MGP_CASTEiJ_T0021958.1 MGP_CASTEiJ_G0015943.1 mouse_genomes_project 1 156218511 156258981 - MGP_CASTEiJ_P0021958 Dhx9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021959.1 MGP_CASTEiJ_G0015943.1 mouse_genomes_project 1 156218516 156258957 - MGP_CASTEiJ_P0021959 Dhx9 protein_coding protein_coding MGP_CASTEiJ_T0021960.1 MGP_CASTEiJ_G0015943.1 mouse_genomes_project 1 156218516 156258905 - MGP_CASTEiJ_P0021960 Dhx9 protein_coding protein_coding MGP_CASTEiJ_T0021961.1 MGP_CASTEiJ_G0015943.1 mouse_genomes_project 1 156225383 156258942 - MGP_CASTEiJ_P0021961 Dhx9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021962.1 MGP_CASTEiJ_G0015943.1 mouse_genomes_project 1 156225389 156247951 - MGP_CASTEiJ_P0021962 Dhx9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021963.1 MGP_CASTEiJ_G0015943.1 mouse_genomes_project 1 156227027 156258948 - MGP_CASTEiJ_P0021963 Dhx9 protein_coding protein_coding MGP_CASTEiJ_T0021964.1 MGP_CASTEiJ_G0015943.1 mouse_genomes_project 1 156241808 156247965 - Dhx9 protein_coding retained_intron MGP_CASTEiJ_T0021965.1 MGP_CASTEiJ_G0015943.1 mouse_genomes_project 1 156246650 156258955 - Dhx9 protein_coding retained_intron MGP_CASTEiJ_T0021966.1 MGP_CASTEiJ_G0015943.1 mouse_genomes_project 1 156248089 156250369 - Dhx9 protein_coding retained_intron MGP_CASTEiJ_T0021967.1 MGP_CASTEiJ_G0015943.1 mouse_genomes_project 1 156252203 156258931 - Dhx9 protein_coding retained_intron MGP_CASTEiJ_T0011964.1 MGP_CASTEiJ_G0010127.1 mouse_genomes_project 1 162448558 162449064 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020469.1 MGP_CASTEiJ_G0015626.1 mouse_genomes_project 1 88151502 88339172 + MGP_CASTEiJ_P0020469 Ugt1a9 protein_coding protein_coding MGP_CASTEiJ_T0021163.1 MGP_CASTEiJ_G0015778.1 mouse_genomes_project 1 129507724 129560014 - MGP_CASTEiJ_P0021163 Lct protein_coding protein_coding MGP_CASTEiJ_T0021164.1 MGP_CASTEiJ_G0015778.1 mouse_genomes_project 1 129510559 129519039 - Lct protein_coding retained_intron MGP_CASTEiJ_T0005754.1 MGP_CASTEiJ_G0004839.1 mouse_genomes_project 1 138323572 138326092 - Gm33994 lincRNA lincRNA MGP_CASTEiJ_T0021570.1 MGP_CASTEiJ_G0015870.1 mouse_genomes_project 1 136958184 136967538 - Timm17a protein_coding retained_intron MGP_CASTEiJ_T0021571.1 MGP_CASTEiJ_G0015870.1 mouse_genomes_project 1 136958286 136971253 - MGP_CASTEiJ_P0021571 Timm17a protein_coding protein_coding MGP_CASTEiJ_T0019546.1 MGP_CASTEiJ_G0015459.1 mouse_genomes_project 1 64303570 64322159 - MGP_CASTEiJ_P0019546 Gm28845 protein_coding protein_coding MGP_CASTEiJ_T0023339.1 MGP_CASTEiJ_G0016248.1 mouse_genomes_project 1 187889461 187910443 + MGP_CASTEiJ_P0023339 Taf1a protein_coding protein_coding MGP_CASTEiJ_T0023340.1 MGP_CASTEiJ_G0016248.1 mouse_genomes_project 1 187889465 187908373 + MGP_CASTEiJ_P0023340 Taf1a protein_coding protein_coding MGP_CASTEiJ_T0023341.1 MGP_CASTEiJ_G0016248.1 mouse_genomes_project 1 187891460 187910443 + MGP_CASTEiJ_P0023341 Taf1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0023342.1 MGP_CASTEiJ_G0016248.1 mouse_genomes_project 1 187909698 187911301 + MGP_CASTEiJ_P0023342 Taf1a protein_coding protein_coding MGP_CASTEiJ_T0011803.1 MGP_CASTEiJ_G0009966.1 mouse_genomes_project 1 86435927 86436272 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009272.1 MGP_CASTEiJ_G0007460.1 mouse_genomes_project 1 88074297 88074407 + Gm25198 miRNA miRNA MGP_CASTEiJ_T0022375.1 MGP_CASTEiJ_G0016013.1 mouse_genomes_project 1 166170832 166195267 - MGP_CASTEiJ_P0022375 Fmo6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022376.1 MGP_CASTEiJ_G0016013.1 mouse_genomes_project 1 166171004 166194970 - MGP_CASTEiJ_P0022376 Fmo6 protein_coding protein_coding MGP_CASTEiJ_T0002706.1 MGP_CASTEiJ_G0002579.1 mouse_genomes_project 1 57110055 57176036 - Gm15759 antisense antisense MGP_CASTEiJ_T0022811.1 MGP_CASTEiJ_G0016116.1 mouse_genomes_project 1 175482891 175510658 + Cd84 protein_coding processed_transcript MGP_CASTEiJ_T0022812.1 MGP_CASTEiJ_G0016116.1 mouse_genomes_project 1 175483734 175500039 + MGP_CASTEiJ_P0022812 Cd84 protein_coding protein_coding MGP_CASTEiJ_T0022813.1 MGP_CASTEiJ_G0016116.1 mouse_genomes_project 1 175483802 175525517 + MGP_CASTEiJ_P0022813 Cd84 protein_coding protein_coding MGP_CASTEiJ_T0020497.1 MGP_CASTEiJ_G0015641.1 mouse_genomes_project 1 89772032 90234337 + MGP_CASTEiJ_P0020497 Agap1 protein_coding protein_coding MGP_CASTEiJ_T0020498.1 MGP_CASTEiJ_G0015641.1 mouse_genomes_project 1 89772100 90226742 + MGP_CASTEiJ_P0020498 Agap1 protein_coding protein_coding MGP_CASTEiJ_T0020499.1 MGP_CASTEiJ_G0015641.1 mouse_genomes_project 1 89772478 89776852 + Agap1 protein_coding retained_intron MGP_CASTEiJ_T0020500.1 MGP_CASTEiJ_G0015641.1 mouse_genomes_project 1 89909636 90232003 + MGP_CASTEiJ_P0020500 Agap1 protein_coding protein_coding MGP_CASTEiJ_T0020501.1 MGP_CASTEiJ_G0015641.1 mouse_genomes_project 1 89910147 90225636 + MGP_CASTEiJ_P0020501 Agap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0011553.1 MGP_CASTEiJ_G0009716.1 mouse_genomes_project 1 1972579 1973210 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000493.1 MGP_CASTEiJ_G0000439.1 mouse_genomes_project 1 80059435 80060589 - TEC TEC MGP_CASTEiJ_T0011875.1 MGP_CASTEiJ_G0010038.1 mouse_genomes_project 1 120010992 120011791 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022027.1 MGP_CASTEiJ_G0015958.1 mouse_genomes_project 1 158067954 158069465 - BC034090 protein_coding retained_intron MGP_CASTEiJ_T0022028.1 MGP_CASTEiJ_G0015958.1 mouse_genomes_project 1 158069003 158098915 - MGP_CASTEiJ_P0022028 BC034090 protein_coding protein_coding MGP_CASTEiJ_T0022029.1 MGP_CASTEiJ_G0015958.1 mouse_genomes_project 1 158073007 158080428 - BC034090 protein_coding processed_transcript MGP_CASTEiJ_T0022030.1 MGP_CASTEiJ_G0015958.1 mouse_genomes_project 1 158073757 158080177 - BC034090 protein_coding processed_transcript MGP_CASTEiJ_T0022031.1 MGP_CASTEiJ_G0015958.1 mouse_genomes_project 1 158080692 158084890 - BC034090 protein_coding processed_transcript MGP_CASTEiJ_T0022032.1 MGP_CASTEiJ_G0015958.1 mouse_genomes_project 1 158081042 158087892 - MGP_CASTEiJ_P0022032 BC034090 protein_coding protein_coding MGP_CASTEiJ_T0022033.1 MGP_CASTEiJ_G0015958.1 mouse_genomes_project 1 158081126 158095592 - BC034090 protein_coding retained_intron MGP_CASTEiJ_T0022034.1 MGP_CASTEiJ_G0015958.1 mouse_genomes_project 1 158084109 158086874 - BC034090 protein_coding retained_intron MGP_CASTEiJ_T0009258.1 MGP_CASTEiJ_G0007446.1 mouse_genomes_project 1 74035756 74035841 + Mir26b miRNA miRNA MGP_CASTEiJ_T0011951.1 MGP_CASTEiJ_G0010114.1 mouse_genomes_project 1 157861580 157861792 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021334.1 MGP_CASTEiJ_G0015819.1 mouse_genomes_project 1 133749339 133769404 + MGP_CASTEiJ_P0021334 Nuak2 protein_coding protein_coding MGP_CASTEiJ_T0021335.1 MGP_CASTEiJ_G0015819.1 mouse_genomes_project 1 133749339 133769598 + MGP_CASTEiJ_P0021335 Nuak2 protein_coding protein_coding MGP_CASTEiJ_T0021336.1 MGP_CASTEiJ_G0015819.1 mouse_genomes_project 1 133749369 133769609 + MGP_CASTEiJ_P0021336 Nuak2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021337.1 MGP_CASTEiJ_G0015819.1 mouse_genomes_project 1 133749378 133750951 + Nuak2 protein_coding processed_transcript MGP_CASTEiJ_T0021338.1 MGP_CASTEiJ_G0015819.1 mouse_genomes_project 1 133764028 133766572 + Nuak2 protein_coding retained_intron MGP_CASTEiJ_T0019033.1 MGP_CASTEiJ_G0015360.1 mouse_genomes_project 1 51176967 51224758 - MGP_CASTEiJ_P0019033 Nab1 protein_coding protein_coding MGP_CASTEiJ_T0019034.1 MGP_CASTEiJ_G0015360.1 mouse_genomes_project 1 51180099 51224975 - MGP_CASTEiJ_P0019034 Nab1 protein_coding protein_coding MGP_CASTEiJ_T0019035.1 MGP_CASTEiJ_G0015360.1 mouse_genomes_project 1 51186052 51191058 - Nab1 protein_coding retained_intron MGP_CASTEiJ_T0019036.1 MGP_CASTEiJ_G0015360.1 mouse_genomes_project 1 51214771 51224773 - Nab1 protein_coding processed_transcript MGP_CASTEiJ_T0011673.1 MGP_CASTEiJ_G0009836.1 mouse_genomes_project 1 43526636 43527303 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098431.1 MGP_CASTEiJ_G0035362.1 mouse_genomes_project 1 90683799 90683906 + Gm27648 rRNA rRNA MGP_CASTEiJ_T0020655.1 MGP_CASTEiJ_G0015676.1 mouse_genomes_project 1 93335425 93386557 - MGP_CASTEiJ_P0020655 Ankmy1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020656.1 MGP_CASTEiJ_G0015676.1 mouse_genomes_project 1 93338309 93391254 - MGP_CASTEiJ_P0020656 Ankmy1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020657.1 MGP_CASTEiJ_G0015676.1 mouse_genomes_project 1 93344491 93386880 - MGP_CASTEiJ_P0020657 Ankmy1 protein_coding protein_coding MGP_CASTEiJ_T0020658.1 MGP_CASTEiJ_G0015676.1 mouse_genomes_project 1 93344491 93386880 - MGP_CASTEiJ_P0020658 Ankmy1 protein_coding protein_coding MGP_CASTEiJ_T0000391.1 MGP_CASTEiJ_G0000338.1 mouse_genomes_project 1 26386379 26387893 + TEC TEC MGP_CASTEiJ_T0011786.1 MGP_CASTEiJ_G0009949.1 mouse_genomes_project 1 79298186 79299538 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100324.1 MGP_CASTEiJ_G0037237.1 mouse_genomes_project 1 164197397 164197477 + Gm26224 snoRNA snoRNA MGP_CASTEiJ_T0099131.1 MGP_CASTEiJ_G0036044.1 mouse_genomes_project 1 173231801 173231908 - Gm22114 snRNA snRNA MGP_CASTEiJ_T0000591.1 MGP_CASTEiJ_G0000537.1 mouse_genomes_project 1 132479320 132485107 - TEC TEC MGP_CASTEiJ_T0022924.1 MGP_CASTEiJ_G0016141.1 mouse_genomes_project 1 176584516 176585597 - MGP_CASTEiJ_P0022924 Apcs protein_coding protein_coding MGP_CASTEiJ_T0020448.1 MGP_CASTEiJ_G0015622.1 mouse_genomes_project 1 87898457 87995925 + MGP_CASTEiJ_P0020448 Dgkd protein_coding protein_coding MGP_CASTEiJ_T0020449.1 MGP_CASTEiJ_G0015622.1 mouse_genomes_project 1 87926762 87964558 + Dgkd protein_coding retained_intron MGP_CASTEiJ_T0020450.1 MGP_CASTEiJ_G0015622.1 mouse_genomes_project 1 87966733 87970805 + Dgkd protein_coding retained_intron MGP_CASTEiJ_T0020451.1 MGP_CASTEiJ_G0015622.1 mouse_genomes_project 1 87980826 87989688 + MGP_CASTEiJ_P0020451 Dgkd protein_coding protein_coding MGP_CASTEiJ_T0020452.1 MGP_CASTEiJ_G0015622.1 mouse_genomes_project 1 87985831 87996615 + MGP_CASTEiJ_P0020452 Dgkd protein_coding protein_coding MGP_CASTEiJ_T0020453.1 MGP_CASTEiJ_G0015622.1 mouse_genomes_project 1 87986717 87991700 + Dgkd protein_coding retained_intron MGP_CASTEiJ_T0020454.1 MGP_CASTEiJ_G0015622.1 mouse_genomes_project 1 87989819 87996613 + MGP_CASTEiJ_P0020454 Dgkd protein_coding protein_coding MGP_CASTEiJ_T0018335.1 MGP_CASTEiJ_G0015225.1 mouse_genomes_project 1 18455411 18505953 + MGP_CASTEiJ_P0018335 Paqr8 protein_coding protein_coding MGP_CASTEiJ_T0018336.1 MGP_CASTEiJ_G0015225.1 mouse_genomes_project 1 18483810 18505354 + MGP_CASTEiJ_P0018336 Paqr8 protein_coding protein_coding MGP_CASTEiJ_T0018337.1 MGP_CASTEiJ_G0015225.1 mouse_genomes_project 1 18483844 18502046 + MGP_CASTEiJ_P0018337 Paqr8 protein_coding protein_coding MGP_CASTEiJ_T0018338.1 MGP_CASTEiJ_G0015225.1 mouse_genomes_project 1 18487820 18502053 + MGP_CASTEiJ_P0018338 Paqr8 protein_coding protein_coding MGP_CASTEiJ_T0002672.1 MGP_CASTEiJ_G0002552.1 mouse_genomes_project 1 32661568 32662077 - 1700101I19Rik antisense antisense MGP_CASTEiJ_T0002673.1 MGP_CASTEiJ_G0002552.1 mouse_genomes_project 1 32661590 32661979 - 1700101I19Rik antisense antisense MGP_CASTEiJ_T0099072.1 MGP_CASTEiJ_G0035985.1 mouse_genomes_project 1 23017667 23017774 - Gm22260 snRNA snRNA MGP_CASTEiJ_T0002709.1 MGP_CASTEiJ_G0002581.1 mouse_genomes_project 1 57995391 57997653 + G730003C15Rik antisense antisense MGP_CASTEiJ_T0002710.1 MGP_CASTEiJ_G0002581.1 mouse_genomes_project 1 57995391 57997655 + G730003C15Rik antisense antisense MGP_CASTEiJ_T0011779.1 MGP_CASTEiJ_G0009942.1 mouse_genomes_project 1 75209345 75209836 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018653.1 MGP_CASTEiJ_G0015287.1 mouse_genomes_project 1 35413244 35441265 + MGP_CASTEiJ_P0018653 Cnga3 protein_coding protein_coding MGP_CASTEiJ_T0018654.1 MGP_CASTEiJ_G0015287.1 mouse_genomes_project 1 35417182 35461973 + MGP_CASTEiJ_P0018654 Cnga3 protein_coding protein_coding MGP_CASTEiJ_T0018655.1 MGP_CASTEiJ_G0015287.1 mouse_genomes_project 1 35417182 35461973 + MGP_CASTEiJ_P0018655 Cnga3 protein_coding protein_coding MGP_CASTEiJ_T0018656.1 MGP_CASTEiJ_G0015287.1 mouse_genomes_project 1 35418008 35463188 + MGP_CASTEiJ_P0018656 Cnga3 protein_coding protein_coding MGP_CASTEiJ_T0005818.1 MGP_CASTEiJ_G0004887.1 mouse_genomes_project 1 169050081 169051296 + Gm37073 lincRNA lincRNA MGP_CASTEiJ_T0020281.1 MGP_CASTEiJ_G0015590.1 mouse_genomes_project 1 85941876 85949732 + Spata3 protein_coding processed_transcript MGP_CASTEiJ_T0020282.1 MGP_CASTEiJ_G0015590.1 mouse_genomes_project 1 85943754 85955872 + Spata3 protein_coding processed_transcript MGP_CASTEiJ_T0020283.1 MGP_CASTEiJ_G0015590.1 mouse_genomes_project 1 85947002 85956585 + MGP_CASTEiJ_P0020283 Spata3 protein_coding protein_coding MGP_CASTEiJ_T0020284.1 MGP_CASTEiJ_G0015590.1 mouse_genomes_project 1 85947003 85949729 + MGP_CASTEiJ_P0020284 Spata3 protein_coding protein_coding MGP_CASTEiJ_T0020285.1 MGP_CASTEiJ_G0015590.1 mouse_genomes_project 1 85947006 85949731 + MGP_CASTEiJ_P0020285 Spata3 protein_coding protein_coding MGP_CASTEiJ_T0020286.1 MGP_CASTEiJ_G0015590.1 mouse_genomes_project 1 85947006 85952220 + MGP_CASTEiJ_P0020286 Spata3 protein_coding protein_coding MGP_CASTEiJ_T0020287.1 MGP_CASTEiJ_G0015590.1 mouse_genomes_project 1 85947006 85956585 + MGP_CASTEiJ_P0020287 Spata3 protein_coding protein_coding MGP_CASTEiJ_T0020288.1 MGP_CASTEiJ_G0015590.1 mouse_genomes_project 1 85947013 85956548 + MGP_CASTEiJ_P0020288 Spata3 protein_coding protein_coding MGP_CASTEiJ_T0020289.1 MGP_CASTEiJ_G0015590.1 mouse_genomes_project 1 85947020 85955886 + MGP_CASTEiJ_P0020289 Spata3 protein_coding protein_coding MGP_CASTEiJ_T0020290.1 MGP_CASTEiJ_G0015590.1 mouse_genomes_project 1 85947021 85949732 + MGP_CASTEiJ_P0020290 Spata3 protein_coding protein_coding MGP_CASTEiJ_T0020291.1 MGP_CASTEiJ_G0015590.1 mouse_genomes_project 1 85947165 85955888 + MGP_CASTEiJ_P0020291 Spata3 protein_coding protein_coding MGP_CASTEiJ_T0005877.1 MGP_CASTEiJ_G0004933.1 mouse_genomes_project 1 190369247 190382066 + Gm38093 lincRNA lincRNA MGP_CASTEiJ_T0098799.1 MGP_CASTEiJ_G0035729.1 mouse_genomes_project 1 146130932 146134607 + Gm29170 sense_intronic sense_intronic MGP_CASTEiJ_T0101907.1 MGP_CASTEiJ_G0038632.1 mouse_genomes_project 1 52090490 52095228 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000364.1 MGP_CASTEiJ_G0000313.1 mouse_genomes_project 1 19081842 19084189 - TEC TEC MGP_CASTEiJ_T0011602.1 MGP_CASTEiJ_G0009765.1 mouse_genomes_project 1 15473978 15477140 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018415.1 MGP_CASTEiJ_G0015245.1 mouse_genomes_project 1 28715546 28785824 - MGP_CASTEiJ_P0018415 Phf3 protein_coding protein_coding MGP_CASTEiJ_T0018416.1 MGP_CASTEiJ_G0015245.1 mouse_genomes_project 1 28715549 28773428 - MGP_CASTEiJ_P0018416 Phf3 protein_coding protein_coding MGP_CASTEiJ_T0018417.1 MGP_CASTEiJ_G0015245.1 mouse_genomes_project 1 28716753 28723924 - MGP_CASTEiJ_P0018417 Phf3 protein_coding protein_coding MGP_CASTEiJ_T0018418.1 MGP_CASTEiJ_G0015245.1 mouse_genomes_project 1 28719418 28722299 - Phf3 protein_coding retained_intron MGP_CASTEiJ_T0018419.1 MGP_CASTEiJ_G0015245.1 mouse_genomes_project 1 28725115 28726747 - Phf3 protein_coding retained_intron MGP_CASTEiJ_T0018420.1 MGP_CASTEiJ_G0015245.1 mouse_genomes_project 1 28726782 28785934 - Phf3 protein_coding retained_intron MGP_CASTEiJ_T0018421.1 MGP_CASTEiJ_G0015245.1 mouse_genomes_project 1 28728526 28786160 - Phf3 protein_coding retained_intron MGP_CASTEiJ_T0018422.1 MGP_CASTEiJ_G0015245.1 mouse_genomes_project 1 28734540 28786043 - MGP_CASTEiJ_P0018422 Phf3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018423.1 MGP_CASTEiJ_G0015245.1 mouse_genomes_project 1 28735372 28738162 - Phf3 protein_coding retained_intron MGP_CASTEiJ_T0018424.1 MGP_CASTEiJ_G0015245.1 mouse_genomes_project 1 28738734 28773242 - Phf3 protein_coding processed_transcript MGP_CASTEiJ_T0018425.1 MGP_CASTEiJ_G0015245.1 mouse_genomes_project 1 28743749 28745062 - Phf3 protein_coding retained_intron MGP_CASTEiJ_T0018426.1 MGP_CASTEiJ_G0015245.1 mouse_genomes_project 1 28745523 28786133 - MGP_CASTEiJ_P0018426 Phf3 protein_coding protein_coding MGP_CASTEiJ_T0018427.1 MGP_CASTEiJ_G0015245.1 mouse_genomes_project 1 28773241 28785491 - MGP_CASTEiJ_P0018427 Phf3 protein_coding protein_coding MGP_CASTEiJ_T0018428.1 MGP_CASTEiJ_G0015245.1 mouse_genomes_project 1 28784891 28785714 - Phf3 protein_coding retained_intron MGP_CASTEiJ_T0000658.1 MGP_CASTEiJ_G0000602.1 mouse_genomes_project 1 159333712 159336293 + TEC TEC MGP_CASTEiJ_T0000656.1 MGP_CASTEiJ_G0000600.1 mouse_genomes_project 1 158919451 158924156 - TEC TEC MGP_CASTEiJ_T0020509.1 MGP_CASTEiJ_G0015644.1 mouse_genomes_project 1 90383817 90500404 - MGP_CASTEiJ_P0020509 Iqca protein_coding protein_coding MGP_CASTEiJ_T0020510.1 MGP_CASTEiJ_G0015644.1 mouse_genomes_project 1 90383820 90434403 - Iqca protein_coding processed_transcript MGP_CASTEiJ_T0020511.1 MGP_CASTEiJ_G0015644.1 mouse_genomes_project 1 90383853 90500177 - MGP_CASTEiJ_P0020511 Iqca protein_coding unknown_likely_coding MGP_CASTEiJ_T0020512.1 MGP_CASTEiJ_G0015644.1 mouse_genomes_project 1 90403884 90411261 - MGP_CASTEiJ_P0020512 Iqca protein_coding protein_coding MGP_CASTEiJ_T0020513.1 MGP_CASTEiJ_G0015644.1 mouse_genomes_project 1 90426531 90434403 - Iqca protein_coding processed_transcript MGP_CASTEiJ_T0020514.1 MGP_CASTEiJ_G0015644.1 mouse_genomes_project 1 90473111 90500404 - Iqca protein_coding processed_transcript MGP_CASTEiJ_T0100253.1 MGP_CASTEiJ_G0037166.1 mouse_genomes_project 1 13199595 13199727 + Gm25168 snoRNA snoRNA MGP_CASTEiJ_T0023596.1 MGP_CASTEiJ_G0016301.1 mouse_genomes_project 1 198083268 198108570 - MGP_CASTEiJ_P0023596 Diexf protein_coding protein_coding MGP_CASTEiJ_T0023597.1 MGP_CASTEiJ_G0016301.1 mouse_genomes_project 1 198084753 198111451 - MGP_CASTEiJ_P0023597 Diexf protein_coding protein_coding MGP_CASTEiJ_T0023598.1 MGP_CASTEiJ_G0016301.1 mouse_genomes_project 1 198097141 198125845 - MGP_CASTEiJ_P0023598 Diexf protein_coding protein_coding MGP_CASTEiJ_T0023599.1 MGP_CASTEiJ_G0016301.1 mouse_genomes_project 1 198097157 198125817 - MGP_CASTEiJ_P0023599 Diexf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023600.1 MGP_CASTEiJ_G0016301.1 mouse_genomes_project 1 198101274 198125791 - MGP_CASTEiJ_P0023600 Diexf protein_coding unknown_likely_coding MGP_CASTEiJ_T0023601.1 MGP_CASTEiJ_G0016301.1 mouse_genomes_project 1 198101528 198109273 - Diexf protein_coding retained_intron MGP_CASTEiJ_T0023602.1 MGP_CASTEiJ_G0016301.1 mouse_genomes_project 1 198114379 198116375 - Diexf protein_coding retained_intron MGP_CASTEiJ_T0023603.1 MGP_CASTEiJ_G0016301.1 mouse_genomes_project 1 198114544 198123822 - Diexf protein_coding processed_transcript MGP_CASTEiJ_T0023604.1 MGP_CASTEiJ_G0016301.1 mouse_genomes_project 1 198115945 198125780 - MGP_CASTEiJ_P0023604 Diexf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023605.1 MGP_CASTEiJ_G0016301.1 mouse_genomes_project 1 198115963 198117711 - Diexf protein_coding processed_transcript MGP_CASTEiJ_T0011939.1 MGP_CASTEiJ_G0010102.1 mouse_genomes_project 1 152697712 152698315 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000578.1 MGP_CASTEiJ_G0000524.1 mouse_genomes_project 1 129305393 129309275 - TEC TEC MGP_CASTEiJ_T0011975.1 MGP_CASTEiJ_G0010138.1 mouse_genomes_project 1 167781012 167781325 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011753.1 MGP_CASTEiJ_G0009916.1 mouse_genomes_project 1 62858449 62858953 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005541.1 MGP_CASTEiJ_G0004675.1 mouse_genomes_project 1 38186019 38192592 - 1700066B17Rik lincRNA lincRNA MGP_CASTEiJ_T0005542.1 MGP_CASTEiJ_G0004675.1 mouse_genomes_project 1 38189308 38194222 - 1700066B17Rik lincRNA lincRNA MGP_CASTEiJ_T0005543.1 MGP_CASTEiJ_G0004675.1 mouse_genomes_project 1 38189313 38194226 - 1700066B17Rik lincRNA lincRNA MGP_CASTEiJ_T0011996.1 MGP_CASTEiJ_G0010159.1 mouse_genomes_project 1 175747666 175747996 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018865.1 MGP_CASTEiJ_G0015332.1 mouse_genomes_project 1 42100761 42191328 + MGP_CASTEiJ_P0018865 protein_coding protein_coding MGP_CASTEiJ_T0018866.1 MGP_CASTEiJ_G0015332.1 mouse_genomes_project 1 42101950 42119082 + protein_coding processed_transcript MGP_CASTEiJ_T0018867.1 MGP_CASTEiJ_G0015332.1 mouse_genomes_project 1 42101950 42216538 + MGP_CASTEiJ_P0018867 protein_coding protein_coding MGP_CASTEiJ_T0018868.1 MGP_CASTEiJ_G0015332.1 mouse_genomes_project 1 42113463 42119110 + protein_coding processed_transcript MGP_CASTEiJ_T0018869.1 MGP_CASTEiJ_G0015332.1 mouse_genomes_project 1 42190099 42216001 + MGP_CASTEiJ_P0018869 protein_coding protein_coding MGP_CASTEiJ_T0018870.1 MGP_CASTEiJ_G0015332.1 mouse_genomes_project 1 42191264 42231401 + MGP_CASTEiJ_P0018870 protein_coding protein_coding MGP_CASTEiJ_T0000323.1 MGP_CASTEiJ_G0000272.1 mouse_genomes_project 1 1598791 1600275 - TEC TEC MGP_CASTEiJ_T0023491.1 MGP_CASTEiJ_G0016278.1 mouse_genomes_project 1 195908044 195940045 - MGP_CASTEiJ_P0023491 Vash2 protein_coding protein_coding MGP_CASTEiJ_T0023492.1 MGP_CASTEiJ_G0016278.1 mouse_genomes_project 1 195908046 195939751 - MGP_CASTEiJ_P0023492 Vash2 protein_coding protein_coding MGP_CASTEiJ_T0023493.1 MGP_CASTEiJ_G0016278.1 mouse_genomes_project 1 195933637 195939963 - Vash2 protein_coding processed_transcript MGP_CASTEiJ_T0021019.1 MGP_CASTEiJ_G0015750.1 mouse_genomes_project 1 120733974 120812814 - MGP_CASTEiJ_P0021019 Cfap221 protein_coding protein_coding MGP_CASTEiJ_T0021020.1 MGP_CASTEiJ_G0015750.1 mouse_genomes_project 1 120734152 120809459 - MGP_CASTEiJ_P0021020 Cfap221 protein_coding protein_coding MGP_CASTEiJ_T0021021.1 MGP_CASTEiJ_G0015750.1 mouse_genomes_project 1 120774027 120812858 - MGP_CASTEiJ_P0021021 Cfap221 protein_coding protein_coding MGP_CASTEiJ_T0018373.1 MGP_CASTEiJ_G0015236.1 mouse_genomes_project 1 21574456 21639843 - Smap1 protein_coding processed_transcript MGP_CASTEiJ_T0018374.1 MGP_CASTEiJ_G0015236.1 mouse_genomes_project 1 21576883 21652701 - MGP_CASTEiJ_P0018374 Smap1 protein_coding protein_coding MGP_CASTEiJ_T0018375.1 MGP_CASTEiJ_G0015236.1 mouse_genomes_project 1 21577436 21579033 - Smap1 protein_coding processed_transcript MGP_CASTEiJ_T0018376.1 MGP_CASTEiJ_G0015236.1 mouse_genomes_project 1 21577687 21652539 - MGP_CASTEiJ_P0018376 Smap1 protein_coding protein_coding MGP_CASTEiJ_T0018377.1 MGP_CASTEiJ_G0015236.1 mouse_genomes_project 1 21579534 21599009 - Smap1 protein_coding processed_transcript MGP_CASTEiJ_T0018378.1 MGP_CASTEiJ_G0015236.1 mouse_genomes_project 1 21579787 21639810 - Smap1 protein_coding processed_transcript MGP_CASTEiJ_T0018379.1 MGP_CASTEiJ_G0015236.1 mouse_genomes_project 1 21580049 21621248 - Smap1 protein_coding retained_intron MGP_CASTEiJ_T0000689.1 MGP_CASTEiJ_G0000633.1 mouse_genomes_project 1 166568734 166571027 - TEC TEC MGP_CASTEiJ_T0000552.1 MGP_CASTEiJ_G0000498.1 mouse_genomes_project 1 111723441 111726989 - TEC TEC MGP_CASTEiJ_T0019960.1 MGP_CASTEiJ_G0015533.1 mouse_genomes_project 1 74843099 74847714 - MGP_CASTEiJ_P0019960 A630095N17Rik protein_coding protein_coding MGP_CASTEiJ_T0019961.1 MGP_CASTEiJ_G0015533.1 mouse_genomes_project 1 74843260 74857539 - MGP_CASTEiJ_P0019961 A630095N17Rik protein_coding protein_coding MGP_CASTEiJ_T0019962.1 MGP_CASTEiJ_G0015533.1 mouse_genomes_project 1 74856311 74857551 - MGP_CASTEiJ_P0019962 A630095N17Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000398.1 MGP_CASTEiJ_G0000345.1 mouse_genomes_project 1 30987377 30992404 - TEC TEC MGP_CASTEiJ_T0019295.1 MGP_CASTEiJ_G0015410.1 mouse_genomes_project 1 57663841 57720601 + MGP_CASTEiJ_P0019295 Casp8 protein_coding protein_coding MGP_CASTEiJ_T0019296.1 MGP_CASTEiJ_G0015410.1 mouse_genomes_project 1 57670891 57720106 + MGP_CASTEiJ_P0019296 Casp8 protein_coding protein_coding MGP_CASTEiJ_T0011815.1 MGP_CASTEiJ_G0009978.1 mouse_genomes_project 1 93485222 93488603 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016316.1 MGP_CASTEiJ_G0014431.1 mouse_genomes_project 1 149237298 149239884 - processed_transcript antisense MGP_CASTEiJ_T0012025.1 MGP_CASTEiJ_G0010188.1 mouse_genomes_project 1 195959724 195959929 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000354.1 MGP_CASTEiJ_G0000303.1 mouse_genomes_project 1 11670825 11671264 - TEC TEC MGP_CASTEiJ_T0018349.1 MGP_CASTEiJ_G0015230.1 mouse_genomes_project 1 18990597 18998092 + MGP_CASTEiJ_P0018349 Khdc1b protein_coding protein_coding MGP_CASTEiJ_T0011593.1 MGP_CASTEiJ_G0009756.1 mouse_genomes_project 1 13202387 13202933 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005716.1 MGP_CASTEiJ_G0004807.1 mouse_genomes_project 1 120319613 120328730 - 3830432H09Rik lincRNA lincRNA MGP_CASTEiJ_T0005717.1 MGP_CASTEiJ_G0004807.1 mouse_genomes_project 1 120320426 120327808 - 3830432H09Rik lincRNA lincRNA MGP_CASTEiJ_T0020251.1 MGP_CASTEiJ_G0015583.1 mouse_genomes_project 1 84932493 84962756 - MGP_CASTEiJ_P0020251 Slc16a14 protein_coding protein_coding MGP_CASTEiJ_T0020252.1 MGP_CASTEiJ_G0015583.1 mouse_genomes_project 1 84954874 84962479 - MGP_CASTEiJ_P0020252 Slc16a14 protein_coding protein_coding MGP_CASTEiJ_T0011652.1 MGP_CASTEiJ_G0009815.1 mouse_genomes_project 1 32845621 32845769 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022834.1 MGP_CASTEiJ_G0016121.1 mouse_genomes_project 1 175741899 175783165 + MGP_CASTEiJ_P0022834 Copa protein_coding protein_coding MGP_CASTEiJ_T0022835.1 MGP_CASTEiJ_G0016121.1 mouse_genomes_project 1 175742013 175752919 + Copa protein_coding retained_intron MGP_CASTEiJ_T0022836.1 MGP_CASTEiJ_G0016121.1 mouse_genomes_project 1 175742175 175770818 + MGP_CASTEiJ_P0022836 Copa protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022837.1 MGP_CASTEiJ_G0016121.1 mouse_genomes_project 1 175742201 175763505 + Copa protein_coding retained_intron MGP_CASTEiJ_T0022838.1 MGP_CASTEiJ_G0016121.1 mouse_genomes_project 1 175742202 175783170 + MGP_CASTEiJ_P0022838 Copa protein_coding protein_coding MGP_CASTEiJ_T0022839.1 MGP_CASTEiJ_G0016121.1 mouse_genomes_project 1 175754616 175760601 + Copa protein_coding processed_transcript MGP_CASTEiJ_T0022840.1 MGP_CASTEiJ_G0016121.1 mouse_genomes_project 1 175759070 175765034 + MGP_CASTEiJ_P0022840 Copa protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022841.1 MGP_CASTEiJ_G0016121.1 mouse_genomes_project 1 175772059 175776404 + Copa protein_coding retained_intron MGP_CASTEiJ_T0022842.1 MGP_CASTEiJ_G0016121.1 mouse_genomes_project 1 175775164 175783168 + Copa protein_coding retained_intron MGP_CASTEiJ_T0022843.1 MGP_CASTEiJ_G0016121.1 mouse_genomes_project 1 175778927 175780175 + Copa protein_coding retained_intron MGP_CASTEiJ_T0005648.1 MGP_CASTEiJ_G0004749.1 mouse_genomes_project 1 78597646 79024598 - lincRNA lincRNA MGP_CASTEiJ_T0098308.1 MGP_CASTEiJ_G0035239.1 mouse_genomes_project 1 120316557 120318358 + pseudogene pseudogene MGP_CASTEiJ_T0000733.1 MGP_CASTEiJ_G0000676.1 mouse_genomes_project 1 186417599 186419828 - TEC TEC MGP_CASTEiJ_T0022629.1 MGP_CASTEiJ_G0016076.1 mouse_genomes_project 1 173766191 173769499 + MGP_CASTEiJ_P0022629 1700015E13Rik protein_coding protein_coding MGP_CASTEiJ_T0022580.1 MGP_CASTEiJ_G0016061.1 mouse_genomes_project 1 170975010 171021522 + MGP_CASTEiJ_P0022580 Rxrg protein_coding protein_coding MGP_CASTEiJ_T0099098.1 MGP_CASTEiJ_G0036011.1 mouse_genomes_project 1 87265032 87265133 + Gm26187 snRNA snRNA MGP_CASTEiJ_T0011661.1 MGP_CASTEiJ_G0009824.1 mouse_genomes_project 1 36991419 36991922 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023524.1 MGP_CASTEiJ_G0016287.1 mouse_genomes_project 1 196322542 196346470 + MGP_CASTEiJ_P0023524 Tmem206 protein_coding protein_coding MGP_CASTEiJ_T0023525.1 MGP_CASTEiJ_G0016287.1 mouse_genomes_project 1 196322546 196346833 + MGP_CASTEiJ_P0023525 Tmem206 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020673.1 MGP_CASTEiJ_G0015679.1 mouse_genomes_project 1 93420044 93434563 + MGP_CASTEiJ_P0020673 Capn10 protein_coding protein_coding MGP_CASTEiJ_T0020674.1 MGP_CASTEiJ_G0015679.1 mouse_genomes_project 1 93420434 93427618 + MGP_CASTEiJ_P0020674 Capn10 protein_coding protein_coding MGP_CASTEiJ_T0020675.1 MGP_CASTEiJ_G0015679.1 mouse_genomes_project 1 93420501 93434551 + MGP_CASTEiJ_P0020675 Capn10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020676.1 MGP_CASTEiJ_G0015679.1 mouse_genomes_project 1 93427108 93431722 + MGP_CASTEiJ_P0020676 Capn10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020677.1 MGP_CASTEiJ_G0015679.1 mouse_genomes_project 1 93429300 93430364 + Capn10 protein_coding retained_intron MGP_CASTEiJ_T0020678.1 MGP_CASTEiJ_G0015679.1 mouse_genomes_project 1 93433174 93433577 + Capn10 protein_coding processed_transcript MGP_CASTEiJ_T0020679.1 MGP_CASTEiJ_G0015679.1 mouse_genomes_project 1 93433506 93434212 + Capn10 protein_coding retained_intron MGP_CASTEiJ_T0002783.1 MGP_CASTEiJ_G0002635.1 mouse_genomes_project 1 133566632 133569954 + Gm29629 antisense antisense MGP_CASTEiJ_T0020202.1 MGP_CASTEiJ_G0015576.1 mouse_genomes_project 1 83107931 83110336 + MGP_CASTEiJ_P0020202 Ccl20 protein_coding protein_coding MGP_CASTEiJ_T0020203.1 MGP_CASTEiJ_G0015576.1 mouse_genomes_project 1 83107939 83110337 + MGP_CASTEiJ_P0020203 Ccl20 protein_coding protein_coding MGP_CASTEiJ_T0020204.1 MGP_CASTEiJ_G0015576.1 mouse_genomes_project 1 83107958 83110337 + MGP_CASTEiJ_P0020204 Ccl20 protein_coding protein_coding MGP_CASTEiJ_T0000584.1 MGP_CASTEiJ_G0000530.1 mouse_genomes_project 1 131032635 131035363 + TEC TEC MGP_CASTEiJ_T0005496.1 MGP_CASTEiJ_G0004637.1 mouse_genomes_project 1 4728107 4730559 - lincRNA retained_intron MGP_CASTEiJ_T0018956.1 MGP_CASTEiJ_G0015349.1 mouse_genomes_project 1 44528388 44546614 - MGP_CASTEiJ_P0018956 Slc40a1 protein_coding protein_coding MGP_CASTEiJ_T0018957.1 MGP_CASTEiJ_G0015349.1 mouse_genomes_project 1 44535600 44546641 - Slc40a1 protein_coding retained_intron MGP_CASTEiJ_T0018958.1 MGP_CASTEiJ_G0015349.1 mouse_genomes_project 1 44539288 44544341 - Slc40a1 protein_coding processed_transcript MGP_CASTEiJ_T0018959.1 MGP_CASTEiJ_G0015349.1 mouse_genomes_project 1 44539296 44546294 - Slc40a1 protein_coding processed_transcript MGP_CASTEiJ_T0018960.1 MGP_CASTEiJ_G0015349.1 mouse_genomes_project 1 44541585 44547549 - MGP_CASTEiJ_P0018960 Slc40a1 protein_coding protein_coding MGP_CASTEiJ_T0018961.1 MGP_CASTEiJ_G0015349.1 mouse_genomes_project 1 44541585 44547549 - MGP_CASTEiJ_P0018961 Slc40a1 protein_coding protein_coding MGP_CASTEiJ_T0018962.1 MGP_CASTEiJ_G0015349.1 mouse_genomes_project 1 44541585 44547549 - MGP_CASTEiJ_P0018962 Slc40a1 protein_coding protein_coding MGP_CASTEiJ_T0018963.1 MGP_CASTEiJ_G0015349.1 mouse_genomes_project 1 44544763 44547553 - Slc40a1 protein_coding retained_intron MGP_CASTEiJ_T0020703.1 MGP_CASTEiJ_G0015685.1 mouse_genomes_project 1 93664858 93726487 + MGP_CASTEiJ_P0020703 Crocc2 protein_coding protein_coding MGP_CASTEiJ_T0020704.1 MGP_CASTEiJ_G0015685.1 mouse_genomes_project 1 93676008 93726646 + MGP_CASTEiJ_P0020704 Crocc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020705.1 MGP_CASTEiJ_G0015685.1 mouse_genomes_project 1 93685364 93726607 + MGP_CASTEiJ_P0020705 Crocc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023311.1 MGP_CASTEiJ_G0016243.1 mouse_genomes_project 1 187559058 187713205 - MGP_CASTEiJ_P0023311 Disp1 protein_coding protein_coding MGP_CASTEiJ_T0023312.1 MGP_CASTEiJ_G0016243.1 mouse_genomes_project 1 187559058 187713200 - MGP_CASTEiJ_P0023312 Disp1 protein_coding protein_coding MGP_CASTEiJ_T0023313.1 MGP_CASTEiJ_G0016243.1 mouse_genomes_project 1 187559058 187630025 - MGP_CASTEiJ_P0023313 Disp1 protein_coding protein_coding MGP_CASTEiJ_T0023314.1 MGP_CASTEiJ_G0016243.1 mouse_genomes_project 1 187569970 187630095 - Disp1 protein_coding retained_intron MGP_CASTEiJ_T0023315.1 MGP_CASTEiJ_G0016243.1 mouse_genomes_project 1 187614785 187713237 - MGP_CASTEiJ_P0023315 Disp1 protein_coding protein_coding MGP_CASTEiJ_T0011629.1 MGP_CASTEiJ_G0009792.1 mouse_genomes_project 1 26643092 26646121 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021071.1 MGP_CASTEiJ_G0015763.1 mouse_genomes_project 1 124304648 125107512 - MGP_CASTEiJ_P0021071 Dpp10 protein_coding protein_coding MGP_CASTEiJ_T0021072.1 MGP_CASTEiJ_G0015763.1 mouse_genomes_project 1 124315136 125107078 - MGP_CASTEiJ_P0021072 Dpp10 protein_coding protein_coding MGP_CASTEiJ_T0021073.1 MGP_CASTEiJ_G0015763.1 mouse_genomes_project 1 124612603 124664262 - Dpp10 protein_coding processed_transcript MGP_CASTEiJ_T0021074.1 MGP_CASTEiJ_G0015763.1 mouse_genomes_project 1 124636750 125107177 - Dpp10 protein_coding processed_transcript MGP_CASTEiJ_T0011973.1 MGP_CASTEiJ_G0010136.1 mouse_genomes_project 1 166978093 166979135 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000550.1 MGP_CASTEiJ_G0000496.1 mouse_genomes_project 1 109137897 109140657 + TEC TEC MGP_CASTEiJ_T0018839.1 MGP_CASTEiJ_G0015325.1 mouse_genomes_project 1 39181401 39234568 + MGP_CASTEiJ_P0018839 Tmem182 protein_coding protein_coding MGP_CASTEiJ_T0098733.1 MGP_CASTEiJ_G0035664.1 mouse_genomes_project 1 128526023 128526152 + Gm23370 scaRNA scaRNA MGP_CASTEiJ_T0000510.1 MGP_CASTEiJ_G0000456.1 mouse_genomes_project 1 84835025 84839782 - TEC TEC MGP_CASTEiJ_T0100302.1 MGP_CASTEiJ_G0037215.1 mouse_genomes_project 1 108605522 108605654 + Gm22438 snoRNA snoRNA MGP_CASTEiJ_T0002888.1 MGP_CASTEiJ_G0002720.1 mouse_genomes_project 1 196837472 196839098 - Gm38037 antisense antisense MGP_CASTEiJ_T0019063.1 MGP_CASTEiJ_G0015365.1 mouse_genomes_project 1 51661321 51700887 - MGP_CASTEiJ_P0019063 1700019D03Rik protein_coding protein_coding MGP_CASTEiJ_T0019064.1 MGP_CASTEiJ_G0015365.1 mouse_genomes_project 1 51661321 51689314 - MGP_CASTEiJ_P0019064 1700019D03Rik protein_coding protein_coding MGP_CASTEiJ_T0019065.1 MGP_CASTEiJ_G0015365.1 mouse_genomes_project 1 51661321 51688806 - MGP_CASTEiJ_P0019065 1700019D03Rik protein_coding protein_coding MGP_CASTEiJ_T0019066.1 MGP_CASTEiJ_G0015365.1 mouse_genomes_project 1 51664173 51747646 - MGP_CASTEiJ_P0019066 1700019D03Rik protein_coding protein_coding MGP_CASTEiJ_T0019067.1 MGP_CASTEiJ_G0015365.1 mouse_genomes_project 1 51664178 51709631 - MGP_CASTEiJ_P0019067 1700019D03Rik protein_coding protein_coding MGP_CASTEiJ_T0019068.1 MGP_CASTEiJ_G0015365.1 mouse_genomes_project 1 51664188 51723910 - MGP_CASTEiJ_P0019068 1700019D03Rik protein_coding protein_coding MGP_CASTEiJ_T0019170.1 MGP_CASTEiJ_G0015388.1 mouse_genomes_project 1 54192763 54560539 + MGP_CASTEiJ_P0019170 Plcl1 protein_coding protein_coding MGP_CASTEiJ_T0019171.1 MGP_CASTEiJ_G0015388.1 mouse_genomes_project 1 54502907 54539263 + Plcl1 protein_coding processed_transcript MGP_CASTEiJ_T0021118.1 MGP_CASTEiJ_G0015772.1 mouse_genomes_project 1 128969215 128992459 + Ccnt2 protein_coding retained_intron MGP_CASTEiJ_T0021119.1 MGP_CASTEiJ_G0015772.1 mouse_genomes_project 1 128969215 128990252 + Ccnt2 protein_coding retained_intron MGP_CASTEiJ_T0021120.1 MGP_CASTEiJ_G0015772.1 mouse_genomes_project 1 128969215 128992459 + Ccnt2 protein_coding retained_intron MGP_CASTEiJ_T0021121.1 MGP_CASTEiJ_G0015772.1 mouse_genomes_project 1 128969215 128994947 + Ccnt2 protein_coding retained_intron MGP_CASTEiJ_T0021122.1 MGP_CASTEiJ_G0015772.1 mouse_genomes_project 1 128969215 129007491 + MGP_CASTEiJ_P0021122 Ccnt2 protein_coding protein_coding MGP_CASTEiJ_T0021123.1 MGP_CASTEiJ_G0015772.1 mouse_genomes_project 1 128969215 129005365 + MGP_CASTEiJ_P0021123 Ccnt2 protein_coding protein_coding MGP_CASTEiJ_T0021124.1 MGP_CASTEiJ_G0015772.1 mouse_genomes_project 1 128993114 129007491 + Ccnt2 protein_coding processed_transcript MGP_CASTEiJ_T0100313.1 MGP_CASTEiJ_G0037226.1 mouse_genomes_project 1 136092653 136092779 + Gm25612 snoRNA snoRNA MGP_CASTEiJ_T0099073.1 MGP_CASTEiJ_G0035986.1 mouse_genomes_project 1 23196399 23196503 + Gm25294 snRNA snRNA MGP_CASTEiJ_T0019073.1 MGP_CASTEiJ_G0015368.1 mouse_genomes_project 1 51932136 52036067 - MGP_CASTEiJ_P0019073 Pms1 protein_coding protein_coding MGP_CASTEiJ_T0019074.1 MGP_CASTEiJ_G0015368.1 mouse_genomes_project 1 51939752 52036066 - MGP_CASTEiJ_P0019074 Pms1 protein_coding protein_coding MGP_CASTEiJ_T0019075.1 MGP_CASTEiJ_G0015368.1 mouse_genomes_project 1 52004514 52036024 - MGP_CASTEiJ_P0019075 Pms1 protein_coding protein_coding MGP_CASTEiJ_T0019076.1 MGP_CASTEiJ_G0015368.1 mouse_genomes_project 1 52018117 52024749 - MGP_CASTEiJ_P0019076 Pms1 protein_coding protein_coding MGP_CASTEiJ_T0019077.1 MGP_CASTEiJ_G0015368.1 mouse_genomes_project 1 52018139 52036064 - MGP_CASTEiJ_P0019077 Pms1 protein_coding protein_coding MGP_CASTEiJ_T0019078.1 MGP_CASTEiJ_G0015368.1 mouse_genomes_project 1 52024297 52036064 - MGP_CASTEiJ_P0019078 Pms1 protein_coding protein_coding MGP_CASTEiJ_T0019079.1 MGP_CASTEiJ_G0015368.1 mouse_genomes_project 1 52034372 52036064 - Pms1 protein_coding retained_intron MGP_CASTEiJ_T0009224.1 MGP_CASTEiJ_G0007412.1 mouse_genomes_project 1 9771583 9771704 + Mir6341 miRNA miRNA MGP_CASTEiJ_T0019708.1 MGP_CASTEiJ_G0015490.1 mouse_genomes_project 1 72410568 72427542 - MGP_CASTEiJ_P0019708 Igfbp5 protein_coding protein_coding MGP_CASTEiJ_T0019709.1 MGP_CASTEiJ_G0015490.1 mouse_genomes_project 1 72410701 72426917 - Igfbp5 protein_coding processed_transcript MGP_CASTEiJ_T0018313.1 MGP_CASTEiJ_G0015218.1 mouse_genomes_project 1 15767729 15788627 - MGP_CASTEiJ_P0018313 Defb41 protein_coding protein_coding MGP_CASTEiJ_T0018314.1 MGP_CASTEiJ_G0015218.1 mouse_genomes_project 1 15783431 15788569 - MGP_CASTEiJ_P0018314 Defb41 protein_coding protein_coding MGP_CASTEiJ_T0020640.1 MGP_CASTEiJ_G0015671.1 mouse_genomes_project 1 93071398 93072407 + MGP_CASTEiJ_P0020640 Olfr1410 protein_coding protein_coding MGP_CASTEiJ_T0020641.1 MGP_CASTEiJ_G0015671.1 mouse_genomes_project 1 93071398 93072367 + MGP_CASTEiJ_P0020641 Olfr1410 protein_coding protein_coding MGP_CASTEiJ_T0020210.1 MGP_CASTEiJ_G0015578.1 mouse_genomes_project 1 83255543 83414019 - MGP_CASTEiJ_P0020210 Sphkap protein_coding protein_coding MGP_CASTEiJ_T0020211.1 MGP_CASTEiJ_G0015578.1 mouse_genomes_project 1 83256980 83413826 - MGP_CASTEiJ_P0020211 Sphkap protein_coding unknown_likely_coding MGP_CASTEiJ_T0020212.1 MGP_CASTEiJ_G0015578.1 mouse_genomes_project 1 83256984 83283770 - MGP_CASTEiJ_P0020212 Sphkap protein_coding protein_coding MGP_CASTEiJ_T0020213.1 MGP_CASTEiJ_G0015578.1 mouse_genomes_project 1 83267549 83413984 - Sphkap protein_coding retained_intron MGP_CASTEiJ_T0020214.1 MGP_CASTEiJ_G0015578.1 mouse_genomes_project 1 83344296 83413958 - Sphkap protein_coding retained_intron MGP_CASTEiJ_T0020215.1 MGP_CASTEiJ_G0015578.1 mouse_genomes_project 1 83386150 83413984 - Sphkap protein_coding retained_intron MGP_CASTEiJ_T0011560.1 MGP_CASTEiJ_G0009723.1 mouse_genomes_project 1 3660661 3661300 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101954.1 MGP_CASTEiJ_G0038679.1 mouse_genomes_project 1 180863436 180863596 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000763.1 MGP_CASTEiJ_G0000704.1 mouse_genomes_project 1 198373764 198374392 + TEC TEC MGP_CASTEiJ_T0011887.1 MGP_CASTEiJ_G0010050.1 mouse_genomes_project 1 123092198 123093033 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020579.1 MGP_CASTEiJ_G0015656.1 mouse_genomes_project 1 91740668 91768806 + MGP_CASTEiJ_P0020579 Espnl protein_coding protein_coding MGP_CASTEiJ_T0020580.1 MGP_CASTEiJ_G0015656.1 mouse_genomes_project 1 91740726 91766451 + MGP_CASTEiJ_P0020580 Espnl protein_coding protein_coding MGP_CASTEiJ_T0019105.1 MGP_CASTEiJ_G0015376.1 mouse_genomes_project 1 52986107 53007879 + Ccdc150 protein_coding retained_intron MGP_CASTEiJ_T0019106.1 MGP_CASTEiJ_G0015376.1 mouse_genomes_project 1 52986107 53096246 + MGP_CASTEiJ_P0019106 Ccdc150 protein_coding protein_coding MGP_CASTEiJ_T0019107.1 MGP_CASTEiJ_G0015376.1 mouse_genomes_project 1 52986146 53095989 + MGP_CASTEiJ_P0019107 Ccdc150 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019108.1 MGP_CASTEiJ_G0015376.1 mouse_genomes_project 1 53060132 53096127 + Ccdc150 protein_coding processed_transcript MGP_CASTEiJ_T0019109.1 MGP_CASTEiJ_G0015376.1 mouse_genomes_project 1 53082125 53096122 + Ccdc150 protein_coding retained_intron MGP_CASTEiJ_T0005686.1 MGP_CASTEiJ_G0004783.1 mouse_genomes_project 1 93619238 93620398 - Gm28086 lincRNA lincRNA MGP_CASTEiJ_T0020199.1 MGP_CASTEiJ_G0015575.1 mouse_genomes_project 1 82995960 83021058 - MGP_CASTEiJ_P0020199 Slc19a3 protein_coding protein_coding MGP_CASTEiJ_T0020200.1 MGP_CASTEiJ_G0015575.1 mouse_genomes_project 1 82995961 83003044 - Slc19a3 protein_coding processed_transcript MGP_CASTEiJ_T0020201.1 MGP_CASTEiJ_G0015575.1 mouse_genomes_project 1 82997237 83021041 - MGP_CASTEiJ_P0020201 Slc19a3 protein_coding protein_coding MGP_CASTEiJ_T0005689.1 MGP_CASTEiJ_G0004785.1 mouse_genomes_project 1 96290433 96308472 - 4930598F16Rik lincRNA lincRNA MGP_CASTEiJ_T0022665.1 MGP_CASTEiJ_G0016085.1 mouse_genomes_project 1 174566463 174574551 - Fcgr3 protein_coding retained_intron MGP_CASTEiJ_T0022666.1 MGP_CASTEiJ_G0016085.1 mouse_genomes_project 1 174566464 174575943 - MGP_CASTEiJ_P0022666 Fcgr3 protein_coding protein_coding MGP_CASTEiJ_T0022667.1 MGP_CASTEiJ_G0016085.1 mouse_genomes_project 1 174566484 174575943 - MGP_CASTEiJ_P0022667 Fcgr3 protein_coding protein_coding MGP_CASTEiJ_T0022959.1 MGP_CASTEiJ_G0016159.1 mouse_genomes_project 1 177724503 177731544 - protein_coding processed_transcript MGP_CASTEiJ_T0011631.1 MGP_CASTEiJ_G0009794.1 mouse_genomes_project 1 27117935 27118485 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021229.1 MGP_CASTEiJ_G0015796.1 mouse_genomes_project 1 132402597 132407749 + MGP_CASTEiJ_P0021229 Il10 protein_coding protein_coding MGP_CASTEiJ_T0000386.1 MGP_CASTEiJ_G0000333.1 mouse_genomes_project 1 23545510 23550283 - TEC TEC MGP_CASTEiJ_T0011834.1 MGP_CASTEiJ_G0009997.1 mouse_genomes_project 1 102913473 102913740 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022553.1 MGP_CASTEiJ_G0016053.1 mouse_genomes_project 1 169898050 169954330 - MGP_CASTEiJ_P0022553 Gm4847 protein_coding protein_coding MGP_CASTEiJ_T0099070.1 MGP_CASTEiJ_G0035983.1 mouse_genomes_project 1 10747648 10747760 - Gm23169 snRNA snRNA MGP_CASTEiJ_T0022083.1 MGP_CASTEiJ_G0015967.1 mouse_genomes_project 1 159118600 159170667 - MGP_CASTEiJ_P0022083 Tdrd5 protein_coding protein_coding MGP_CASTEiJ_T0022084.1 MGP_CASTEiJ_G0015967.1 mouse_genomes_project 1 159118602 159170346 - MGP_CASTEiJ_P0022084 Tdrd5 protein_coding protein_coding MGP_CASTEiJ_T0022085.1 MGP_CASTEiJ_G0015967.1 mouse_genomes_project 1 159123337 159127103 - Tdrd5 protein_coding processed_transcript MGP_CASTEiJ_T0022086.1 MGP_CASTEiJ_G0015967.1 mouse_genomes_project 1 159130612 159138564 - Tdrd5 protein_coding retained_intron MGP_CASTEiJ_T0022087.1 MGP_CASTEiJ_G0015967.1 mouse_genomes_project 1 159158090 159170604 - MGP_CASTEiJ_P0022087 Tdrd5 protein_coding protein_coding MGP_CASTEiJ_T0099150.1 MGP_CASTEiJ_G0036063.1 mouse_genomes_project 1 197734067 197734183 + Gm22265 snRNA snRNA MGP_CASTEiJ_T0018028.1 MGP_CASTEiJ_G0015167.1 mouse_genomes_project 1 2349423 2442664 + MGP_CASTEiJ_P0018028 Atp6v1h protein_coding protein_coding MGP_CASTEiJ_T0018029.1 MGP_CASTEiJ_G0015167.1 mouse_genomes_project 1 2360000 2442853 + MGP_CASTEiJ_P0018029 Atp6v1h protein_coding protein_coding MGP_CASTEiJ_T0018030.1 MGP_CASTEiJ_G0015167.1 mouse_genomes_project 1 2360030 2373748 + MGP_CASTEiJ_P0018030 Atp6v1h protein_coding protein_coding MGP_CASTEiJ_T0018031.1 MGP_CASTEiJ_G0015167.1 mouse_genomes_project 1 2360044 2425587 + Atp6v1h protein_coding retained_intron MGP_CASTEiJ_T0018032.1 MGP_CASTEiJ_G0015167.1 mouse_genomes_project 1 2360052 2363691 + Atp6v1h protein_coding retained_intron MGP_CASTEiJ_T0018033.1 MGP_CASTEiJ_G0015167.1 mouse_genomes_project 1 2360052 2373679 + MGP_CASTEiJ_P0018033 Atp6v1h protein_coding protein_coding MGP_CASTEiJ_T0018034.1 MGP_CASTEiJ_G0015167.1 mouse_genomes_project 1 2360074 2442743 + MGP_CASTEiJ_P0018034 Atp6v1h protein_coding protein_coding MGP_CASTEiJ_T0018035.1 MGP_CASTEiJ_G0015167.1 mouse_genomes_project 1 2360084 2377802 + Atp6v1h protein_coding retained_intron MGP_CASTEiJ_T0018036.1 MGP_CASTEiJ_G0015167.1 mouse_genomes_project 1 2360185 2442659 + MGP_CASTEiJ_P0018036 Atp6v1h protein_coding unknown_likely_coding MGP_CASTEiJ_T0021897.1 MGP_CASTEiJ_G0015930.1 mouse_genomes_project 1 154385324 154452558 + MGP_CASTEiJ_P0021897 Edem3 protein_coding protein_coding MGP_CASTEiJ_T0021898.1 MGP_CASTEiJ_G0015930.1 mouse_genomes_project 1 154385326 154455944 + MGP_CASTEiJ_P0021898 Edem3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021899.1 MGP_CASTEiJ_G0015930.1 mouse_genomes_project 1 154385327 154455674 + MGP_CASTEiJ_P0021899 Edem3 protein_coding protein_coding MGP_CASTEiJ_T0021900.1 MGP_CASTEiJ_G0015930.1 mouse_genomes_project 1 154385413 154452602 + MGP_CASTEiJ_P0021900 Edem3 protein_coding protein_coding MGP_CASTEiJ_T0021901.1 MGP_CASTEiJ_G0015930.1 mouse_genomes_project 1 154385413 154452602 + MGP_CASTEiJ_P0021901 Edem3 protein_coding protein_coding MGP_CASTEiJ_T0021902.1 MGP_CASTEiJ_G0015930.1 mouse_genomes_project 1 154385471 154455944 + MGP_CASTEiJ_P0021902 Edem3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0000754.1 MGP_CASTEiJ_G0000696.1 mouse_genomes_project 1 194793649 194797823 - TEC TEC MGP_CASTEiJ_T0002746.1 MGP_CASTEiJ_G0002607.1 mouse_genomes_project 1 87282081 87282775 - Efhd1os antisense antisense MGP_CASTEiJ_T0022222.1 MGP_CASTEiJ_G0015989.1 mouse_genomes_project 1 163339489 163476877 - MGP_CASTEiJ_P0022222 Rabgap1l protein_coding protein_coding MGP_CASTEiJ_T0022223.1 MGP_CASTEiJ_G0015989.1 mouse_genomes_project 1 163346356 163352174 - Rabgap1l protein_coding retained_intron MGP_CASTEiJ_T0022224.1 MGP_CASTEiJ_G0015989.1 mouse_genomes_project 1 163346872 163371560 - MGP_CASTEiJ_P0022224 Rabgap1l protein_coding protein_coding MGP_CASTEiJ_T0022225.1 MGP_CASTEiJ_G0015989.1 mouse_genomes_project 1 163346924 163428119 - MGP_CASTEiJ_P0022225 Rabgap1l protein_coding protein_coding MGP_CASTEiJ_T0022226.1 MGP_CASTEiJ_G0015989.1 mouse_genomes_project 1 163346974 163407022 - Rabgap1l protein_coding processed_transcript MGP_CASTEiJ_T0022227.1 MGP_CASTEiJ_G0015989.1 mouse_genomes_project 1 163356757 163368124 - Rabgap1l protein_coding retained_intron MGP_CASTEiJ_T0022228.1 MGP_CASTEiJ_G0015989.1 mouse_genomes_project 1 163368107 163370867 - Rabgap1l protein_coding processed_transcript MGP_CASTEiJ_T0022229.1 MGP_CASTEiJ_G0015989.1 mouse_genomes_project 1 163376683 163429951 - MGP_CASTEiJ_P0022229 Rabgap1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022230.1 MGP_CASTEiJ_G0015989.1 mouse_genomes_project 1 163377044 163566091 - MGP_CASTEiJ_P0022230 Rabgap1l protein_coding protein_coding MGP_CASTEiJ_T0022231.1 MGP_CASTEiJ_G0015989.1 mouse_genomes_project 1 163377316 163937238 - MGP_CASTEiJ_P0022231 Rabgap1l protein_coding protein_coding MGP_CASTEiJ_T0022232.1 MGP_CASTEiJ_G0015989.1 mouse_genomes_project 1 163403565 163407209 - Rabgap1l protein_coding processed_transcript MGP_CASTEiJ_T0022233.1 MGP_CASTEiJ_G0015989.1 mouse_genomes_project 1 163408288 163414019 - Rabgap1l protein_coding processed_transcript MGP_CASTEiJ_T0022234.1 MGP_CASTEiJ_G0015989.1 mouse_genomes_project 1 163410044 163428557 - Rabgap1l protein_coding processed_transcript MGP_CASTEiJ_T0022235.1 MGP_CASTEiJ_G0015989.1 mouse_genomes_project 1 163565823 163578391 - Rabgap1l protein_coding retained_intron MGP_CASTEiJ_T0022236.1 MGP_CASTEiJ_G0015989.1 mouse_genomes_project 1 163807338 163937230 - MGP_CASTEiJ_P0022236 Rabgap1l protein_coding protein_coding MGP_CASTEiJ_T0022237.1 MGP_CASTEiJ_G0015989.1 mouse_genomes_project 1 163871577 163937502 - MGP_CASTEiJ_P0022237 Rabgap1l protein_coding protein_coding MGP_CASTEiJ_T0000685.1 MGP_CASTEiJ_G0000629.1 mouse_genomes_project 1 164163468 164164330 - TEC TEC MGP_CASTEiJ_T0023609.1 MGP_CASTEiJ_G0016303.1 mouse_genomes_project 1 198164628 198174344 + MGP_CASTEiJ_P0023609 A130010J15Rik protein_coding protein_coding MGP_CASTEiJ_T0023611.1 MGP_CASTEiJ_G0016303.1 mouse_genomes_project 1 198170039 198172844 + MGP_CASTEiJ_P0023611 A130010J15Rik protein_coding protein_coding MGP_CASTEiJ_T0023612.1 MGP_CASTEiJ_G0016303.1 mouse_genomes_project 1 198170063 198171410 + MGP_CASTEiJ_P0023612 A130010J15Rik protein_coding protein_coding MGP_CASTEiJ_T0023613.1 MGP_CASTEiJ_G0016303.1 mouse_genomes_project 1 198170148 198174344 + MGP_CASTEiJ_P0023613 A130010J15Rik protein_coding protein_coding MGP_CASTEiJ_T0023614.1 MGP_CASTEiJ_G0016303.1 mouse_genomes_project 1 198170151 198172846 + MGP_CASTEiJ_P0023614 A130010J15Rik protein_coding protein_coding MGP_CASTEiJ_T0023615.1 MGP_CASTEiJ_G0016303.1 mouse_genomes_project 1 198170151 198171005 + MGP_CASTEiJ_P0023615 A130010J15Rik protein_coding protein_coding MGP_CASTEiJ_T0023616.1 MGP_CASTEiJ_G0016303.1 mouse_genomes_project 1 198170157 198171131 + MGP_CASTEiJ_P0023616 A130010J15Rik protein_coding protein_coding MGP_CASTEiJ_T0023617.1 MGP_CASTEiJ_G0016303.1 mouse_genomes_project 1 198170315 198171174 + MGP_CASTEiJ_P0023617 A130010J15Rik protein_coding protein_coding MGP_CASTEiJ_T0002713.1 MGP_CASTEiJ_G0002584.1 mouse_genomes_project 1 58459513 58461932 - 1700122D07Rik antisense antisense MGP_CASTEiJ_T0020455.1 MGP_CASTEiJ_G0015623.1 mouse_genomes_project 1 87996553 88027119 - MGP_CASTEiJ_P0020455 Usp40 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020456.1 MGP_CASTEiJ_G0015623.1 mouse_genomes_project 1 87996555 88064628 - MGP_CASTEiJ_P0020456 Usp40 protein_coding protein_coding MGP_CASTEiJ_T0020457.1 MGP_CASTEiJ_G0015623.1 mouse_genomes_project 1 87997873 88064612 - MGP_CASTEiJ_P0020457 Usp40 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020458.1 MGP_CASTEiJ_G0015623.1 mouse_genomes_project 1 87997873 88064612 - MGP_CASTEiJ_P0020458 Usp40 protein_coding protein_coding MGP_CASTEiJ_T0020459.1 MGP_CASTEiJ_G0015623.1 mouse_genomes_project 1 88001119 88003094 - Usp40 protein_coding retained_intron MGP_CASTEiJ_T0020460.1 MGP_CASTEiJ_G0015623.1 mouse_genomes_project 1 88016560 88018750 - Usp40 protein_coding retained_intron MGP_CASTEiJ_T0020461.1 MGP_CASTEiJ_G0015623.1 mouse_genomes_project 1 88022824 88064634 - MGP_CASTEiJ_P0020461 Usp40 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020462.1 MGP_CASTEiJ_G0015623.1 mouse_genomes_project 1 88039621 88064606 - Usp40 protein_coding retained_intron MGP_CASTEiJ_T0020463.1 MGP_CASTEiJ_G0015623.1 mouse_genomes_project 1 88061987 88064627 - Usp40 protein_coding retained_intron MGP_CASTEiJ_T0020464.1 MGP_CASTEiJ_G0015623.1 mouse_genomes_project 1 88061987 88064307 - Usp40 protein_coding retained_intron MGP_CASTEiJ_T0002842.1 MGP_CASTEiJ_G0002682.1 mouse_genomes_project 1 173424199 173427748 + 3110045C21Rik antisense antisense MGP_CASTEiJ_T0002843.1 MGP_CASTEiJ_G0002682.1 mouse_genomes_project 1 173424243 173427722 + 3110045C21Rik antisense antisense MGP_CASTEiJ_T0011625.1 MGP_CASTEiJ_G0009788.1 mouse_genomes_project 1 24250973 24251624 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011600.1 MGP_CASTEiJ_G0009763.1 mouse_genomes_project 1 14889741 14890227 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020726.1 MGP_CASTEiJ_G0015690.1 mouse_genomes_project 1 93882026 93913116 + MGP_CASTEiJ_P0020726 Ano7 protein_coding protein_coding MGP_CASTEiJ_T0020727.1 MGP_CASTEiJ_G0015690.1 mouse_genomes_project 1 93882026 93912226 + MGP_CASTEiJ_P0020727 Ano7 protein_coding protein_coding MGP_CASTEiJ_T0020728.1 MGP_CASTEiJ_G0015690.1 mouse_genomes_project 1 93910680 93912396 + MGP_CASTEiJ_P0020728 Ano7 protein_coding protein_coding MGP_CASTEiJ_T0000397.1 MGP_CASTEiJ_G0000344.1 mouse_genomes_project 1 30715557 30718021 + TEC TEC MGP_CASTEiJ_T0000635.1 MGP_CASTEiJ_G0000579.1 mouse_genomes_project 1 148884504 148889231 - TEC TEC MGP_CASTEiJ_T0021651.1 MGP_CASTEiJ_G0015885.1 mouse_genomes_project 1 137831296 137878508 + MGP_CASTEiJ_P0021651 Kif21b protein_coding protein_coding MGP_CASTEiJ_T0021652.1 MGP_CASTEiJ_G0015885.1 mouse_genomes_project 1 137831361 137849765 + Kif21b protein_coding retained_intron MGP_CASTEiJ_T0021653.1 MGP_CASTEiJ_G0015885.1 mouse_genomes_project 1 137831629 137878518 + MGP_CASTEiJ_P0021653 Kif21b protein_coding unknown_likely_coding MGP_CASTEiJ_T0021654.1 MGP_CASTEiJ_G0015885.1 mouse_genomes_project 1 137860083 137864795 + MGP_CASTEiJ_P0021654 Kif21b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021655.1 MGP_CASTEiJ_G0015885.1 mouse_genomes_project 1 137862669 137864582 + Kif21b protein_coding retained_intron MGP_CASTEiJ_T0021656.1 MGP_CASTEiJ_G0015885.1 mouse_genomes_project 1 137869078 137872150 + Kif21b protein_coding processed_transcript MGP_CASTEiJ_T0023557.1 MGP_CASTEiJ_G0016294.1 mouse_genomes_project 1 196998632 197010650 + MGP_CASTEiJ_P0023557 Rd3 protein_coding protein_coding MGP_CASTEiJ_T0023558.1 MGP_CASTEiJ_G0016294.1 mouse_genomes_project 1 196998635 197007655 + MGP_CASTEiJ_P0023558 Rd3 protein_coding protein_coding MGP_CASTEiJ_T0023559.1 MGP_CASTEiJ_G0016294.1 mouse_genomes_project 1 196999513 197007654 + MGP_CASTEiJ_P0023559 Rd3 protein_coding protein_coding MGP_CASTEiJ_T0023560.1 MGP_CASTEiJ_G0016294.1 mouse_genomes_project 1 197005432 197007655 + Rd3 protein_coding retained_intron MGP_CASTEiJ_T0005672.1 MGP_CASTEiJ_G0004769.1 mouse_genomes_project 1 90609307 90614164 - Gm28721 lincRNA lincRNA MGP_CASTEiJ_T0022651.1 MGP_CASTEiJ_G0016082.1 mouse_genomes_project 1 174427768 174440101 - MGP_CASTEiJ_P0022651 Fcrla protein_coding protein_coding MGP_CASTEiJ_T0022652.1 MGP_CASTEiJ_G0016082.1 mouse_genomes_project 1 174428066 174432281 - MGP_CASTEiJ_P0022652 Fcrla protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022653.1 MGP_CASTEiJ_G0016082.1 mouse_genomes_project 1 174428072 174440101 - MGP_CASTEiJ_P0022653 Fcrla protein_coding protein_coding MGP_CASTEiJ_T0022654.1 MGP_CASTEiJ_G0016082.1 mouse_genomes_project 1 174430798 174440073 - MGP_CASTEiJ_P0022654 Fcrla protein_coding protein_coding MGP_CASTEiJ_T0022655.1 MGP_CASTEiJ_G0016082.1 mouse_genomes_project 1 174431509 174440078 - MGP_CASTEiJ_P0022655 Fcrla protein_coding protein_coding MGP_CASTEiJ_T0022656.1 MGP_CASTEiJ_G0016082.1 mouse_genomes_project 1 174431529 174440052 - Fcrla protein_coding processed_transcript MGP_CASTEiJ_T0020885.1 MGP_CASTEiJ_G0015720.1 mouse_genomes_project 1 107139815 107322418 - MGP_CASTEiJ_P0020885 Bcl2 protein_coding protein_coding MGP_CASTEiJ_T0020886.1 MGP_CASTEiJ_G0015720.1 mouse_genomes_project 1 107318515 107321324 - MGP_CASTEiJ_P0020886 Bcl2 protein_coding protein_coding MGP_CASTEiJ_T0000448.1 MGP_CASTEiJ_G0000394.1 mouse_genomes_project 1 58848784 58849494 - TEC TEC MGP_CASTEiJ_T0016275.1 MGP_CASTEiJ_G0014418.1 mouse_genomes_project 1 82647267 82677994 - C430014B12Rik processed_transcript antisense MGP_CASTEiJ_T0016276.1 MGP_CASTEiJ_G0014418.1 mouse_genomes_project 1 82672876 82678046 - C430014B12Rik processed_transcript antisense MGP_CASTEiJ_T0016277.1 MGP_CASTEiJ_G0014418.1 mouse_genomes_project 1 82674732 82678024 - C430014B12Rik processed_transcript retained_intron MGP_CASTEiJ_T0099138.1 MGP_CASTEiJ_G0036051.1 mouse_genomes_project 1 176536891 176536996 - Gm24817 snRNA snRNA MGP_CASTEiJ_T0021634.1 MGP_CASTEiJ_G0015881.1 mouse_genomes_project 1 137620953 137665784 - MGP_CASTEiJ_P0021634 Igfn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021635.1 MGP_CASTEiJ_G0015881.1 mouse_genomes_project 1 137641955 137652857 - MGP_CASTEiJ_P0021635 Igfn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021636.1 MGP_CASTEiJ_G0015881.1 mouse_genomes_project 1 137641962 137698514 - MGP_CASTEiJ_P0021636 Igfn1 protein_coding protein_coding MGP_CASTEiJ_T0021637.1 MGP_CASTEiJ_G0015881.1 mouse_genomes_project 1 137642401 137676774 - MGP_CASTEiJ_P0021637 Igfn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021638.1 MGP_CASTEiJ_G0015881.1 mouse_genomes_project 1 137642975 137674088 - MGP_CASTEiJ_P0021638 Igfn1 protein_coding protein_coding MGP_CASTEiJ_T0009276.1 MGP_CASTEiJ_G0007464.1 mouse_genomes_project 1 93853131 93853195 + Mir6902 miRNA miRNA MGP_CASTEiJ_T0011698.1 MGP_CASTEiJ_G0009861.1 mouse_genomes_project 1 48141077 48141514 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098426.1 MGP_CASTEiJ_G0035357.1 mouse_genomes_project 1 76855376 76855470 + Gm25974 rRNA rRNA MGP_CASTEiJ_T0018463.1 MGP_CASTEiJ_G0015256.1 mouse_genomes_project 1 31771938 31797215 - MGP_CASTEiJ_P0018463 Zfp451 protein_coding unknown_likely_coding MGP_CASTEiJ_T0018464.1 MGP_CASTEiJ_G0015256.1 mouse_genomes_project 1 31771944 31826370 - MGP_CASTEiJ_P0018464 Zfp451 protein_coding protein_coding MGP_CASTEiJ_T0018465.1 MGP_CASTEiJ_G0015256.1 mouse_genomes_project 1 31771944 31826228 - MGP_CASTEiJ_P0018465 Zfp451 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018466.1 MGP_CASTEiJ_G0015256.1 mouse_genomes_project 1 31787960 31817243 - MGP_CASTEiJ_P0018466 Zfp451 protein_coding protein_coding MGP_CASTEiJ_T0018467.1 MGP_CASTEiJ_G0015256.1 mouse_genomes_project 1 31789470 31794470 - MGP_CASTEiJ_P0018467 Zfp451 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018468.1 MGP_CASTEiJ_G0015256.1 mouse_genomes_project 1 31789603 31826269 - MGP_CASTEiJ_P0018468 Zfp451 protein_coding protein_coding MGP_CASTEiJ_T0018469.1 MGP_CASTEiJ_G0015256.1 mouse_genomes_project 1 31792625 31826054 - Zfp451 protein_coding processed_transcript MGP_CASTEiJ_T0018470.1 MGP_CASTEiJ_G0015256.1 mouse_genomes_project 1 31797033 31812592 - Zfp451 protein_coding processed_transcript MGP_CASTEiJ_T0018471.1 MGP_CASTEiJ_G0015256.1 mouse_genomes_project 1 31803980 31826413 - MGP_CASTEiJ_P0018471 Zfp451 protein_coding protein_coding MGP_CASTEiJ_T0018472.1 MGP_CASTEiJ_G0015256.1 mouse_genomes_project 1 31825369 31826438 - Zfp451 protein_coding retained_intron MGP_CASTEiJ_T0019172.1 MGP_CASTEiJ_G0015389.1 mouse_genomes_project 1 55451257 55452649 - MGP_CASTEiJ_P0019172 Hsfy2 protein_coding protein_coding MGP_CASTEiJ_T0011956.1 MGP_CASTEiJ_G0010119.1 mouse_genomes_project 1 158750427 158750733 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021863.1 MGP_CASTEiJ_G0015925.1 mouse_genomes_project 1 153946627 153966296 + MGP_CASTEiJ_P0021863 Ivns1abp protein_coding protein_coding MGP_CASTEiJ_T0021864.1 MGP_CASTEiJ_G0015925.1 mouse_genomes_project 1 153946659 153958670 + MGP_CASTEiJ_P0021864 Ivns1abp protein_coding protein_coding MGP_CASTEiJ_T0021865.1 MGP_CASTEiJ_G0015925.1 mouse_genomes_project 1 153946668 153966289 + MGP_CASTEiJ_P0021865 Ivns1abp protein_coding protein_coding MGP_CASTEiJ_T0021866.1 MGP_CASTEiJ_G0015925.1 mouse_genomes_project 1 153946728 153965239 + MGP_CASTEiJ_P0021866 Ivns1abp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021867.1 MGP_CASTEiJ_G0015925.1 mouse_genomes_project 1 153963131 153963919 + MGP_CASTEiJ_P0021867 Ivns1abp protein_coding protein_coding MGP_CASTEiJ_T0012019.1 MGP_CASTEiJ_G0010182.1 mouse_genomes_project 1 191664322 191665279 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022165.1 MGP_CASTEiJ_G0015980.1 mouse_genomes_project 1 161194641 161334136 - MGP_CASTEiJ_P0022165 Brinp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022166.1 MGP_CASTEiJ_G0015980.1 mouse_genomes_project 1 161220171 161334237 - MGP_CASTEiJ_P0022166 Brinp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022167.1 MGP_CASTEiJ_G0015980.1 mouse_genomes_project 1 161220171 161334334 - MGP_CASTEiJ_P0022167 Brinp2 protein_coding protein_coding MGP_CASTEiJ_T0022168.1 MGP_CASTEiJ_G0015980.1 mouse_genomes_project 1 161275587 161276350 - Brinp2 protein_coding processed_transcript MGP_CASTEiJ_T0022169.1 MGP_CASTEiJ_G0015980.1 mouse_genomes_project 1 161330276 161334303 - Brinp2 protein_coding retained_intron MGP_CASTEiJ_T0021696.1 MGP_CASTEiJ_G0015894.1 mouse_genomes_project 1 139931848 139988470 - Ptprc protein_coding retained_intron MGP_CASTEiJ_T0021697.1 MGP_CASTEiJ_G0015894.1 mouse_genomes_project 1 139932394 140053326 - MGP_CASTEiJ_P0021697 Ptprc protein_coding protein_coding MGP_CASTEiJ_T0021698.1 MGP_CASTEiJ_G0015894.1 mouse_genomes_project 1 139932400 140053287 - MGP_CASTEiJ_P0021698 Ptprc protein_coding protein_coding MGP_CASTEiJ_T0021699.1 MGP_CASTEiJ_G0015894.1 mouse_genomes_project 1 139932407 140053320 - MGP_CASTEiJ_P0021699 Ptprc protein_coding protein_coding MGP_CASTEiJ_T0021700.1 MGP_CASTEiJ_G0015894.1 mouse_genomes_project 1 139984005 139987502 - Ptprc protein_coding retained_intron MGP_CASTEiJ_T0021701.1 MGP_CASTEiJ_G0015894.1 mouse_genomes_project 1 139984272 140053254 - MGP_CASTEiJ_P0021701 Ptprc protein_coding protein_coding MGP_CASTEiJ_T0021702.1 MGP_CASTEiJ_G0015894.1 mouse_genomes_project 1 139989365 139992711 - Ptprc protein_coding retained_intron MGP_CASTEiJ_T0021703.1 MGP_CASTEiJ_G0015894.1 mouse_genomes_project 1 139989866 140053320 - MGP_CASTEiJ_P0021703 Ptprc protein_coding protein_coding MGP_CASTEiJ_T0021704.1 MGP_CASTEiJ_G0015894.1 mouse_genomes_project 1 139991462 140053319 - Ptprc protein_coding retained_intron MGP_CASTEiJ_T0021705.1 MGP_CASTEiJ_G0015894.1 mouse_genomes_project 1 139997483 140053316 - Ptprc protein_coding retained_intron MGP_CASTEiJ_T0021706.1 MGP_CASTEiJ_G0015894.1 mouse_genomes_project 1 139999602 140054944 - Ptprc protein_coding retained_intron MGP_CASTEiJ_T0021707.1 MGP_CASTEiJ_G0015894.1 mouse_genomes_project 1 140049984 140053209 - Ptprc protein_coding retained_intron MGP_CASTEiJ_T0021708.1 MGP_CASTEiJ_G0015894.1 mouse_genomes_project 1 140050751 140053269 - Ptprc protein_coding retained_intron MGP_CASTEiJ_T0022100.1 MGP_CASTEiJ_G0015970.1 mouse_genomes_project 1 159302973 159356378 - MGP_CASTEiJ_P0022100 Soat1 protein_coding protein_coding MGP_CASTEiJ_T0022101.1 MGP_CASTEiJ_G0015970.1 mouse_genomes_project 1 159308224 159347100 - MGP_CASTEiJ_P0022101 Soat1 protein_coding protein_coding MGP_CASTEiJ_T0022102.1 MGP_CASTEiJ_G0015970.1 mouse_genomes_project 1 159309155 159311003 - Soat1 protein_coding retained_intron MGP_CASTEiJ_T0022103.1 MGP_CASTEiJ_G0015970.1 mouse_genomes_project 1 159309413 159311449 - Soat1 protein_coding retained_intron MGP_CASTEiJ_T0022104.1 MGP_CASTEiJ_G0015970.1 mouse_genomes_project 1 159318583 159356287 - Soat1 protein_coding retained_intron MGP_CASTEiJ_T0022105.1 MGP_CASTEiJ_G0015970.1 mouse_genomes_project 1 159319004 159356343 - MGP_CASTEiJ_P0022105 Soat1 protein_coding protein_coding MGP_CASTEiJ_T0022106.1 MGP_CASTEiJ_G0015970.1 mouse_genomes_project 1 159324811 159356244 - Soat1 protein_coding retained_intron MGP_CASTEiJ_T0022107.1 MGP_CASTEiJ_G0015970.1 mouse_genomes_project 1 159325044 159356311 - MGP_CASTEiJ_P0022107 Soat1 protein_coding protein_coding MGP_CASTEiJ_T0011707.1 MGP_CASTEiJ_G0009870.1 mouse_genomes_project 1 50646287 50647248 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011798.1 MGP_CASTEiJ_G0009961.1 mouse_genomes_project 1 83221531 83222371 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016351.1 MGP_CASTEiJ_G0014438.1 mouse_genomes_project 1 174377990 174390758 + Gm9929 processed_transcript processed_transcript MGP_CASTEiJ_T0011559.1 MGP_CASTEiJ_G0009722.1 mouse_genomes_project 1 3306656 3307739 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020492.1 MGP_CASTEiJ_G0015638.1 mouse_genomes_project 1 88755979 88765971 - MGP_CASTEiJ_P0020492 protein_coding protein_coding MGP_CASTEiJ_T0000728.1 MGP_CASTEiJ_G0000671.1 mouse_genomes_project 1 184678259 184681312 + TEC TEC MGP_CASTEiJ_T0021926.1 MGP_CASTEiJ_G0015937.1 mouse_genomes_project 1 155516421 155546604 + MGP_CASTEiJ_P0021926 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021927.1 MGP_CASTEiJ_G0015937.1 mouse_genomes_project 1 155516917 155533414 + MGP_CASTEiJ_P0021927 protein_coding protein_coding MGP_CASTEiJ_T0021928.1 MGP_CASTEiJ_G0015937.1 mouse_genomes_project 1 155517058 155521552 + protein_coding retained_intron MGP_CASTEiJ_T0021929.1 MGP_CASTEiJ_G0015937.1 mouse_genomes_project 1 155519791 155533413 + protein_coding retained_intron MGP_CASTEiJ_T0021930.1 MGP_CASTEiJ_G0015937.1 mouse_genomes_project 1 155532690 155533606 + protein_coding retained_intron MGP_CASTEiJ_T0011946.1 MGP_CASTEiJ_G0010109.1 mouse_genomes_project 1 155099086 155099545 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019478.1 MGP_CASTEiJ_G0015440.1 mouse_genomes_project 1 62307752 62345041 - MGP_CASTEiJ_P0019478 Gpr1 protein_coding protein_coding MGP_CASTEiJ_T0019479.1 MGP_CASTEiJ_G0015440.1 mouse_genomes_project 1 62337055 62344721 - Gpr1 protein_coding processed_transcript MGP_CASTEiJ_T0009297.1 MGP_CASTEiJ_G0007485.1 mouse_genomes_project 1 162409686 162409752 + Mir1843b miRNA miRNA MGP_CASTEiJ_T0018240.1 MGP_CASTEiJ_G0015200.1 mouse_genomes_project 1 12497118 12497687 + MGP_CASTEiJ_P0018240 protein_coding protein_coding MGP_CASTEiJ_T0000679.1 MGP_CASTEiJ_G0000623.1 mouse_genomes_project 1 163867407 163867834 - TEC TEC MGP_CASTEiJ_T0002901.1 MGP_CASTEiJ_G0002727.1 mouse_genomes_project 1 198201804 198224802 + 4930570N18Rik antisense antisense MGP_CASTEiJ_T0022930.1 MGP_CASTEiJ_G0016145.1 mouse_genomes_project 1 176919327 176920269 + MGP_CASTEiJ_P0022930 Olfr218 protein_coding protein_coding MGP_CASTEiJ_T0002885.1 MGP_CASTEiJ_G0002718.1 mouse_genomes_project 1 195985935 195986771 + A230020J21Rik antisense antisense MGP_CASTEiJ_T0002886.1 MGP_CASTEiJ_G0002718.1 mouse_genomes_project 1 195985936 195990331 + A230020J21Rik antisense antisense MGP_CASTEiJ_T0098436.1 MGP_CASTEiJ_G0035367.1 mouse_genomes_project 1 140755787 140755903 - n-R5s217 rRNA rRNA MGP_CASTEiJ_T0021059.1 MGP_CASTEiJ_G0015760.1 mouse_genomes_project 1 122308915 122389844 + MGP_CASTEiJ_P0021059 Ccdc93 protein_coding protein_coding MGP_CASTEiJ_T0021060.1 MGP_CASTEiJ_G0015760.1 mouse_genomes_project 1 122308941 122328264 + Ccdc93 protein_coding retained_intron MGP_CASTEiJ_T0021061.1 MGP_CASTEiJ_G0015760.1 mouse_genomes_project 1 122308961 122328958 + Ccdc93 protein_coding processed_transcript MGP_CASTEiJ_T0021062.1 MGP_CASTEiJ_G0015760.1 mouse_genomes_project 1 122308968 122389844 + MGP_CASTEiJ_P0021062 Ccdc93 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021063.1 MGP_CASTEiJ_G0015760.1 mouse_genomes_project 1 122308974 122323293 + Ccdc93 protein_coding processed_transcript MGP_CASTEiJ_T0021064.1 MGP_CASTEiJ_G0015760.1 mouse_genomes_project 1 122308976 122384981 + MGP_CASTEiJ_P0021064 Ccdc93 protein_coding protein_coding MGP_CASTEiJ_T0021065.1 MGP_CASTEiJ_G0015760.1 mouse_genomes_project 1 122374601 122382868 + Ccdc93 protein_coding retained_intron MGP_CASTEiJ_T0009288.1 MGP_CASTEiJ_G0007476.1 mouse_genomes_project 1 137124746 137124827 - Mir1231 miRNA miRNA MGP_CASTEiJ_T0011874.1 MGP_CASTEiJ_G0010037.1 mouse_genomes_project 1 119926117 119927097 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005581.1 MGP_CASTEiJ_G0004698.1 mouse_genomes_project 1 54733463 54782001 + 9130227L01Rik lincRNA lincRNA MGP_CASTEiJ_T0005582.1 MGP_CASTEiJ_G0004698.1 mouse_genomes_project 1 54769698 54782231 + 9130227L01Rik lincRNA lincRNA MGP_CASTEiJ_T0000339.1 MGP_CASTEiJ_G0000288.1 mouse_genomes_project 1 7787679 7790417 - TEC TEC MGP_CASTEiJ_T0009242.1 MGP_CASTEiJ_G0007430.1 mouse_genomes_project 1 42580540 42582674 - miRNA miRNA MGP_CASTEiJ_T0100255.1 MGP_CASTEiJ_G0037168.1 mouse_genomes_project 1 16511436 16511508 - Gm24075 snoRNA snoRNA MGP_CASTEiJ_T0005499.1 MGP_CASTEiJ_G0004640.1 mouse_genomes_project 1 7265533 7267695 - Snhg6 lincRNA lincRNA MGP_CASTEiJ_T0005500.1 MGP_CASTEiJ_G0004640.1 mouse_genomes_project 1 7265597 7266804 - Snhg6 lincRNA lincRNA MGP_CASTEiJ_T0005501.1 MGP_CASTEiJ_G0004640.1 mouse_genomes_project 1 7265599 7266477 - Snhg6 lincRNA lincRNA MGP_CASTEiJ_T0005502.1 MGP_CASTEiJ_G0004640.1 mouse_genomes_project 1 7265599 7267680 - Snhg6 lincRNA lincRNA MGP_CASTEiJ_T0005503.1 MGP_CASTEiJ_G0004640.1 mouse_genomes_project 1 7265599 7267694 - Snhg6 lincRNA lincRNA MGP_CASTEiJ_T0000697.1 MGP_CASTEiJ_G0000641.1 mouse_genomes_project 1 169765603 169766514 - TEC TEC MGP_CASTEiJ_T0020277.1 MGP_CASTEiJ_G0015588.1 mouse_genomes_project 1 85850560 85853879 + MGP_CASTEiJ_P0020277 protein_coding protein_coding MGP_CASTEiJ_T0020278.1 MGP_CASTEiJ_G0015588.1 mouse_genomes_project 1 85850804 85862756 + MGP_CASTEiJ_P0020278 protein_coding protein_coding MGP_CASTEiJ_T0020279.1 MGP_CASTEiJ_G0015588.1 mouse_genomes_project 1 85850963 85853879 + protein_coding retained_intron MGP_CASTEiJ_T0022962.1 MGP_CASTEiJ_G0016161.1 mouse_genomes_project 1 177962848 177965255 + MGP_CASTEiJ_P0022962 Olfr433 protein_coding protein_coding MGP_CASTEiJ_T0018125.1 MGP_CASTEiJ_G0015183.1 mouse_genomes_project 1 7293010 7309499 - MGP_CASTEiJ_P0018125 Ppp1r42 protein_coding protein_coding MGP_CASTEiJ_T0018126.1 MGP_CASTEiJ_G0015183.1 mouse_genomes_project 1 7293010 7327111 - MGP_CASTEiJ_P0018126 Ppp1r42 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018127.1 MGP_CASTEiJ_G0015183.1 mouse_genomes_project 1 7293206 7333428 - MGP_CASTEiJ_P0018127 Ppp1r42 protein_coding protein_coding MGP_CASTEiJ_T0018128.1 MGP_CASTEiJ_G0015183.1 mouse_genomes_project 1 7293211 7333388 - MGP_CASTEiJ_P0018128 Ppp1r42 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018129.1 MGP_CASTEiJ_G0015183.1 mouse_genomes_project 1 7318918 7333388 - Ppp1r42 protein_coding retained_intron MGP_CASTEiJ_T0000481.1 MGP_CASTEiJ_G0000427.1 mouse_genomes_project 1 72791315 72793850 - TEC TEC MGP_CASTEiJ_T0011584.1 MGP_CASTEiJ_G0009747.1 mouse_genomes_project 1 7890354 7890994 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021007.1 MGP_CASTEiJ_G0015748.1 mouse_genomes_project 1 120448469 120644705 - MGP_CASTEiJ_P0021007 Ptpn4 protein_coding protein_coding MGP_CASTEiJ_T0021008.1 MGP_CASTEiJ_G0015748.1 mouse_genomes_project 1 120454042 120486189 - MGP_CASTEiJ_P0021008 Ptpn4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021009.1 MGP_CASTEiJ_G0015748.1 mouse_genomes_project 1 120488211 120644439 - MGP_CASTEiJ_P0021009 Ptpn4 protein_coding protein_coding MGP_CASTEiJ_T0021010.1 MGP_CASTEiJ_G0015748.1 mouse_genomes_project 1 120491234 120544997 - MGP_CASTEiJ_P0021010 Ptpn4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021011.1 MGP_CASTEiJ_G0015748.1 mouse_genomes_project 1 120510065 120518668 - Ptpn4 protein_coding retained_intron MGP_CASTEiJ_T0021012.1 MGP_CASTEiJ_G0015748.1 mouse_genomes_project 1 120528885 120590168 - MGP_CASTEiJ_P0021012 Ptpn4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021013.1 MGP_CASTEiJ_G0015748.1 mouse_genomes_project 1 120548294 120609314 - MGP_CASTEiJ_P0021013 Ptpn4 protein_coding protein_coding MGP_CASTEiJ_T0021014.1 MGP_CASTEiJ_G0015748.1 mouse_genomes_project 1 120564767 120644163 - MGP_CASTEiJ_P0021014 Ptpn4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021015.1 MGP_CASTEiJ_G0015748.1 mouse_genomes_project 1 120565107 120644163 - MGP_CASTEiJ_P0021015 Ptpn4 protein_coding protein_coding MGP_CASTEiJ_T0021016.1 MGP_CASTEiJ_G0015748.1 mouse_genomes_project 1 120574341 120609334 - MGP_CASTEiJ_P0021016 Ptpn4 protein_coding protein_coding MGP_CASTEiJ_T0021017.1 MGP_CASTEiJ_G0015748.1 mouse_genomes_project 1 120574401 120644091 - MGP_CASTEiJ_P0021017 Ptpn4 protein_coding protein_coding MGP_CASTEiJ_T0005607.1 MGP_CASTEiJ_G0004718.1 mouse_genomes_project 1 63137993 63142701 + Gm13749 lincRNA lincRNA MGP_CASTEiJ_T0018554.1 MGP_CASTEiJ_G0015272.1 mouse_genomes_project 1 34456968 34468672 + MGP_CASTEiJ_P0018554 Arid5a protein_coding protein_coding MGP_CASTEiJ_T0018555.1 MGP_CASTEiJ_G0015272.1 mouse_genomes_project 1 34456989 34467757 + Arid5a protein_coding retained_intron MGP_CASTEiJ_T0018556.1 MGP_CASTEiJ_G0015272.1 mouse_genomes_project 1 34456989 34468683 + Arid5a protein_coding processed_transcript MGP_CASTEiJ_T0018557.1 MGP_CASTEiJ_G0015272.1 mouse_genomes_project 1 34456989 34469356 + Arid5a protein_coding retained_intron MGP_CASTEiJ_T0018558.1 MGP_CASTEiJ_G0015272.1 mouse_genomes_project 1 34456989 34473497 + MGP_CASTEiJ_P0018558 Arid5a protein_coding protein_coding MGP_CASTEiJ_T0018559.1 MGP_CASTEiJ_G0015272.1 mouse_genomes_project 1 34456989 34472459 + MGP_CASTEiJ_P0018559 Arid5a protein_coding protein_coding MGP_CASTEiJ_T0018560.1 MGP_CASTEiJ_G0015272.1 mouse_genomes_project 1 34456989 34469997 + MGP_CASTEiJ_P0018560 Arid5a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018561.1 MGP_CASTEiJ_G0015272.1 mouse_genomes_project 1 34456989 34470545 + MGP_CASTEiJ_P0018561 Arid5a protein_coding protein_coding MGP_CASTEiJ_T0018562.1 MGP_CASTEiJ_G0015272.1 mouse_genomes_project 1 34456989 34469995 + MGP_CASTEiJ_P0018562 Arid5a protein_coding protein_coding MGP_CASTEiJ_T0018563.1 MGP_CASTEiJ_G0015272.1 mouse_genomes_project 1 34456989 34466911 + MGP_CASTEiJ_P0018563 Arid5a protein_coding protein_coding MGP_CASTEiJ_T0018564.1 MGP_CASTEiJ_G0015272.1 mouse_genomes_project 1 34456993 34462009 + Arid5a protein_coding retained_intron MGP_CASTEiJ_T0018565.1 MGP_CASTEiJ_G0015272.1 mouse_genomes_project 1 34457004 34472456 + MGP_CASTEiJ_P0018565 Arid5a protein_coding protein_coding MGP_CASTEiJ_T0018566.1 MGP_CASTEiJ_G0015272.1 mouse_genomes_project 1 34457014 34466048 + Arid5a protein_coding retained_intron MGP_CASTEiJ_T0018567.1 MGP_CASTEiJ_G0015272.1 mouse_genomes_project 1 34465468 34467605 + Arid5a protein_coding retained_intron MGP_CASTEiJ_T0018568.1 MGP_CASTEiJ_G0015272.1 mouse_genomes_project 1 34466495 34467601 + Arid5a protein_coding retained_intron MGP_CASTEiJ_T0012015.1 MGP_CASTEiJ_G0010178.1 mouse_genomes_project 1 187772218 187788539 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011682.1 MGP_CASTEiJ_G0009845.1 mouse_genomes_project 1 44525927 44527109 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000767.1 MGP_CASTEiJ_G0000708.1 mouse_genomes_project 1 199734203 199737772 + TEC TEC MGP_CASTEiJ_T0011642.1 MGP_CASTEiJ_G0009805.1 mouse_genomes_project 1 31479101 31479510 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012030.1 MGP_CASTEiJ_G0010193.1 mouse_genomes_project 1 197018213 197018445 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022473.1 MGP_CASTEiJ_G0016040.1 mouse_genomes_project 1 168797997 168891338 + MGP_CASTEiJ_P0022473 Adcy10 protein_coding protein_coding MGP_CASTEiJ_T0022474.1 MGP_CASTEiJ_G0016040.1 mouse_genomes_project 1 168797997 168890955 + MGP_CASTEiJ_P0022474 Adcy10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022475.1 MGP_CASTEiJ_G0016040.1 mouse_genomes_project 1 168797997 168890236 + MGP_CASTEiJ_P0022475 Adcy10 protein_coding protein_coding MGP_CASTEiJ_T0022476.1 MGP_CASTEiJ_G0016040.1 mouse_genomes_project 1 168798003 168890235 + MGP_CASTEiJ_P0022476 Adcy10 protein_coding protein_coding MGP_CASTEiJ_T0022477.1 MGP_CASTEiJ_G0016040.1 mouse_genomes_project 1 168798007 168802347 + Adcy10 protein_coding processed_transcript MGP_CASTEiJ_T0022478.1 MGP_CASTEiJ_G0016040.1 mouse_genomes_project 1 168798025 168890233 + MGP_CASTEiJ_P0022478 Adcy10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022479.1 MGP_CASTEiJ_G0016040.1 mouse_genomes_project 1 168816836 168874423 + MGP_CASTEiJ_P0022479 Adcy10 protein_coding protein_coding MGP_CASTEiJ_T0022480.1 MGP_CASTEiJ_G0016040.1 mouse_genomes_project 1 168823530 168848600 + Adcy10 protein_coding retained_intron MGP_CASTEiJ_T0022481.1 MGP_CASTEiJ_G0016040.1 mouse_genomes_project 1 168831681 168833510 + Adcy10 protein_coding retained_intron MGP_CASTEiJ_T0022482.1 MGP_CASTEiJ_G0016040.1 mouse_genomes_project 1 168848423 168856468 + Adcy10 protein_coding processed_transcript MGP_CASTEiJ_T0005790.1 MGP_CASTEiJ_G0004867.1 mouse_genomes_project 1 158391379 158398792 - Gm5532 lincRNA lincRNA MGP_CASTEiJ_T0005791.1 MGP_CASTEiJ_G0004867.1 mouse_genomes_project 1 158396646 158398824 - Gm5532 lincRNA lincRNA MGP_CASTEiJ_T0000610.1 MGP_CASTEiJ_G0000555.1 mouse_genomes_project 1 139162321 139162731 - TEC TEC MGP_CASTEiJ_T0022795.1 MGP_CASTEiJ_G0016111.1 mouse_genomes_project 1 175138778 175255006 + MGP_CASTEiJ_P0022795 Cd244 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022796.1 MGP_CASTEiJ_G0016111.1 mouse_genomes_project 1 175138778 175226320 + MGP_CASTEiJ_P0022796 Cd244 protein_coding protein_coding MGP_CASTEiJ_T0022797.1 MGP_CASTEiJ_G0016111.1 mouse_genomes_project 1 175155374 175161515 + Cd244 protein_coding retained_intron MGP_CASTEiJ_T0022798.1 MGP_CASTEiJ_G0016111.1 mouse_genomes_project 1 175219416 175226320 + Cd244 protein_coding retained_intron MGP_CASTEiJ_T0021527.1 MGP_CASTEiJ_G0015861.1 mouse_genomes_project 1 136249023 136349420 + MGP_CASTEiJ_P0021527 protein_coding protein_coding MGP_CASTEiJ_T0021528.1 MGP_CASTEiJ_G0015861.1 mouse_genomes_project 1 136345425 136360695 + MGP_CASTEiJ_P0021528 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021529.1 MGP_CASTEiJ_G0015861.1 mouse_genomes_project 1 136356109 136370097 + protein_coding processed_transcript MGP_CASTEiJ_T0098438.1 MGP_CASTEiJ_G0035369.1 mouse_genomes_project 1 152365746 152365880 + n-R5s219 rRNA rRNA MGP_CASTEiJ_T0018569.1 MGP_CASTEiJ_G0015273.1 mouse_genomes_project 1 34485442 34521043 - MGP_CASTEiJ_P0018569 Kansl3 protein_coding protein_coding MGP_CASTEiJ_T0018570.1 MGP_CASTEiJ_G0015273.1 mouse_genomes_project 1 34485442 34521019 - MGP_CASTEiJ_P0018570 Kansl3 protein_coding protein_coding MGP_CASTEiJ_T0018571.1 MGP_CASTEiJ_G0015273.1 mouse_genomes_project 1 34487283 34519876 - MGP_CASTEiJ_P0018571 Kansl3 protein_coding protein_coding MGP_CASTEiJ_T0018572.1 MGP_CASTEiJ_G0015273.1 mouse_genomes_project 1 34487283 34521033 - MGP_CASTEiJ_P0018572 Kansl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018573.1 MGP_CASTEiJ_G0015273.1 mouse_genomes_project 1 34504407 34519903 - MGP_CASTEiJ_P0018573 Kansl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018574.1 MGP_CASTEiJ_G0015273.1 mouse_genomes_project 1 34507810 34521017 - MGP_CASTEiJ_P0018574 Kansl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018575.1 MGP_CASTEiJ_G0015273.1 mouse_genomes_project 1 34517485 34519903 - MGP_CASTEiJ_P0018575 Kansl3 protein_coding protein_coding MGP_CASTEiJ_T0018576.1 MGP_CASTEiJ_G0015273.1 mouse_genomes_project 1 34517759 34521019 - Kansl3 protein_coding retained_intron MGP_CASTEiJ_T0018577.1 MGP_CASTEiJ_G0015273.1 mouse_genomes_project 1 34519827 34520964 - MGP_CASTEiJ_P0018577 Kansl3 protein_coding protein_coding MGP_CASTEiJ_T0002902.1 MGP_CASTEiJ_G0002728.1 mouse_genomes_project 1 198294594 198295725 - Gm37650 antisense antisense MGP_CASTEiJ_T0021868.1 MGP_CASTEiJ_G0015926.1 mouse_genomes_project 1 153969575 154033293 - MGP_CASTEiJ_P0021868 Swt1 protein_coding protein_coding MGP_CASTEiJ_T0021869.1 MGP_CASTEiJ_G0015926.1 mouse_genomes_project 1 153970239 154033274 - MGP_CASTEiJ_P0021869 Swt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021870.1 MGP_CASTEiJ_G0015926.1 mouse_genomes_project 1 153972287 153973800 - Swt1 protein_coding retained_intron MGP_CASTEiJ_T0021871.1 MGP_CASTEiJ_G0015926.1 mouse_genomes_project 1 153981036 153988209 - Swt1 protein_coding retained_intron MGP_CASTEiJ_T0021872.1 MGP_CASTEiJ_G0015926.1 mouse_genomes_project 1 153995071 154006139 - MGP_CASTEiJ_P0021872 Swt1 protein_coding protein_coding MGP_CASTEiJ_T0021873.1 MGP_CASTEiJ_G0015926.1 mouse_genomes_project 1 154004279 154028384 - MGP_CASTEiJ_P0021873 Swt1 protein_coding protein_coding MGP_CASTEiJ_T0021874.1 MGP_CASTEiJ_G0015926.1 mouse_genomes_project 1 154004917 154007884 - Swt1 protein_coding retained_intron MGP_CASTEiJ_T0021875.1 MGP_CASTEiJ_G0015926.1 mouse_genomes_project 1 154014495 154016327 - Swt1 protein_coding retained_intron MGP_CASTEiJ_T0021876.1 MGP_CASTEiJ_G0015926.1 mouse_genomes_project 1 154020585 154028180 - Swt1 protein_coding retained_intron MGP_CASTEiJ_T0021877.1 MGP_CASTEiJ_G0015926.1 mouse_genomes_project 1 154031858 154033293 - Swt1 protein_coding retained_intron MGP_CASTEiJ_T0021878.1 MGP_CASTEiJ_G0015927.1 mouse_genomes_project 1 154033379 154051611 + Trmt1l protein_coding retained_intron MGP_CASTEiJ_T0021879.1 MGP_CASTEiJ_G0015927.1 mouse_genomes_project 1 154033379 154066389 + MGP_CASTEiJ_P0021879 Trmt1l protein_coding protein_coding MGP_CASTEiJ_T0021880.1 MGP_CASTEiJ_G0015927.1 mouse_genomes_project 1 154033474 154042756 + Trmt1l protein_coding retained_intron MGP_CASTEiJ_T0021881.1 MGP_CASTEiJ_G0015927.1 mouse_genomes_project 1 154033479 154059270 + Trmt1l protein_coding retained_intron MGP_CASTEiJ_T0021882.1 MGP_CASTEiJ_G0015927.1 mouse_genomes_project 1 154033485 154035473 + Trmt1l protein_coding retained_intron MGP_CASTEiJ_T0021883.1 MGP_CASTEiJ_G0015927.1 mouse_genomes_project 1 154033504 154042756 + Trmt1l protein_coding retained_intron MGP_CASTEiJ_T0021884.1 MGP_CASTEiJ_G0015927.1 mouse_genomes_project 1 154033543 154066389 + MGP_CASTEiJ_P0021884 Trmt1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0100249.1 MGP_CASTEiJ_G0037162.1 mouse_genomes_project 1 8475930 8476058 - Gm24173 snoRNA snoRNA MGP_CASTEiJ_T0000699.1 MGP_CASTEiJ_G0000643.1 mouse_genomes_project 1 171754569 171756845 - TEC TEC MGP_CASTEiJ_T0021687.1 MGP_CASTEiJ_G0015892.1 mouse_genomes_project 1 138372126 138377283 + MGP_CASTEiJ_P0021687 Zfp281 protein_coding protein_coding MGP_CASTEiJ_T0021688.1 MGP_CASTEiJ_G0015892.1 mouse_genomes_project 1 138372126 138377283 + MGP_CASTEiJ_P0021688 Zfp281 protein_coding protein_coding MGP_CASTEiJ_T0005585.1 MGP_CASTEiJ_G0004700.1 mouse_genomes_project 1 55335430 55337456 + Gm28240 lincRNA lincRNA MGP_CASTEiJ_T0019089.1 MGP_CASTEiJ_G0015373.1 mouse_genomes_project 1 52090368 52098527 - MGP_CASTEiJ_P0019089 protein_coding protein_coding MGP_CASTEiJ_T0019090.1 MGP_CASTEiJ_G0015373.1 mouse_genomes_project 1 52090396 52098527 - MGP_CASTEiJ_P0019090 protein_coding protein_coding MGP_CASTEiJ_T0019091.1 MGP_CASTEiJ_G0015373.1 mouse_genomes_project 1 52093587 52098527 - MGP_CASTEiJ_P0019091 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019092.1 MGP_CASTEiJ_G0015373.1 mouse_genomes_project 1 52093994 52097047 - MGP_CASTEiJ_P0019092 protein_coding protein_coding MGP_CASTEiJ_T0019093.1 MGP_CASTEiJ_G0015373.1 mouse_genomes_project 1 52096083 52098345 - protein_coding retained_intron MGP_CASTEiJ_T0022206.1 MGP_CASTEiJ_G0015985.1 mouse_genomes_project 1 163156755 163160202 + 4930523C07Rik protein_coding retained_intron MGP_CASTEiJ_T0022207.1 MGP_CASTEiJ_G0015985.1 mouse_genomes_project 1 163156757 163185900 + 4930523C07Rik protein_coding lincRNA MGP_CASTEiJ_T0022208.1 MGP_CASTEiJ_G0015985.1 mouse_genomes_project 1 163156757 163194604 + 4930523C07Rik protein_coding lincRNA MGP_CASTEiJ_T0022209.1 MGP_CASTEiJ_G0015985.1 mouse_genomes_project 1 163156778 163187159 + 4930523C07Rik protein_coding lincRNA MGP_CASTEiJ_T0022210.1 MGP_CASTEiJ_G0015985.1 mouse_genomes_project 1 163156820 163185869 + 4930523C07Rik protein_coding lincRNA MGP_CASTEiJ_T0022211.1 MGP_CASTEiJ_G0015985.1 mouse_genomes_project 1 163189547 163189847 + MGP_CASTEiJ_P0022211 4930523C07Rik protein_coding protein_coding MGP_CASTEiJ_T0000454.1 MGP_CASTEiJ_G0000400.1 mouse_genomes_project 1 60027246 60030716 + TEC TEC MGP_CASTEiJ_T0000477.1 MGP_CASTEiJ_G0000423.1 mouse_genomes_project 1 69156262 69158146 + TEC TEC MGP_CASTEiJ_T0000503.1 MGP_CASTEiJ_G0000449.1 mouse_genomes_project 1 83043629 83044730 - TEC TEC MGP_CASTEiJ_T0011743.1 MGP_CASTEiJ_G0009906.1 mouse_genomes_project 1 60121378 60121933 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011811.1 MGP_CASTEiJ_G0009974.1 mouse_genomes_project 1 91711008 91711900 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019332.1 MGP_CASTEiJ_G0015417.1 mouse_genomes_project 1 58141332 58248563 + MGP_CASTEiJ_P0019332 Cdk15 protein_coding protein_coding MGP_CASTEiJ_T0019333.1 MGP_CASTEiJ_G0015417.1 mouse_genomes_project 1 58141333 58248027 + MGP_CASTEiJ_P0019333 Cdk15 protein_coding protein_coding MGP_CASTEiJ_T0019334.1 MGP_CASTEiJ_G0015417.1 mouse_genomes_project 1 58141554 58142318 + Cdk15 protein_coding processed_transcript MGP_CASTEiJ_T0019335.1 MGP_CASTEiJ_G0015417.1 mouse_genomes_project 1 58186556 58248106 + Cdk15 protein_coding processed_transcript MGP_CASTEiJ_T0019544.1 MGP_CASTEiJ_G0015458.1 mouse_genomes_project 1 64303340 64305744 - Cryga protein_coding retained_intron MGP_CASTEiJ_T0019545.1 MGP_CASTEiJ_G0015458.1 mouse_genomes_project 1 64303340 64305757 - MGP_CASTEiJ_P0019545 Cryga protein_coding protein_coding MGP_CASTEiJ_T0018440.1 MGP_CASTEiJ_G0015250.1 mouse_genomes_project 1 30169390 30670825 + MGP_CASTEiJ_P0018440 Khdrbs2 protein_coding protein_coding MGP_CASTEiJ_T0018441.1 MGP_CASTEiJ_G0015250.1 mouse_genomes_project 1 30169405 30250083 + MGP_CASTEiJ_P0018441 Khdrbs2 protein_coding protein_coding MGP_CASTEiJ_T0018442.1 MGP_CASTEiJ_G0015250.1 mouse_genomes_project 1 30169424 30337850 + MGP_CASTEiJ_P0018442 Khdrbs2 protein_coding protein_coding MGP_CASTEiJ_T0018443.1 MGP_CASTEiJ_G0015250.1 mouse_genomes_project 1 30169563 30311269 + MGP_CASTEiJ_P0018443 Khdrbs2 protein_coding protein_coding MGP_CASTEiJ_T0018444.1 MGP_CASTEiJ_G0015250.1 mouse_genomes_project 1 30314373 30396477 + Khdrbs2 protein_coding processed_transcript MGP_CASTEiJ_T0011619.1 MGP_CASTEiJ_G0009782.1 mouse_genomes_project 1 21191234 21192236 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011741.1 MGP_CASTEiJ_G0009904.1 mouse_genomes_project 1 59926457 59926988 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000577.1 MGP_CASTEiJ_G0000523.1 mouse_genomes_project 1 129182053 129187813 - TEC TEC MGP_CASTEiJ_T0010927.1 MGP_CASTEiJ_G0009115.1 mouse_genomes_project 1 143542379 143542483 + Gm22016 misc_RNA misc_RNA MGP_CASTEiJ_T0010928.1 MGP_CASTEiJ_G0009116.1 mouse_genomes_project 1 168810851 168811102 - Gm23599 misc_RNA misc_RNA MGP_CASTEiJ_T0022574.1 MGP_CASTEiJ_G0016058.1 mouse_genomes_project 1 170713634 170733274 + MGP_CASTEiJ_P0022574 Aldh9a1 protein_coding protein_coding MGP_CASTEiJ_T0022575.1 MGP_CASTEiJ_G0016058.1 mouse_genomes_project 1 170713879 170718116 + Aldh9a1 protein_coding processed_transcript MGP_CASTEiJ_T0022576.1 MGP_CASTEiJ_G0016058.1 mouse_genomes_project 1 170713955 170719506 + Aldh9a1 protein_coding retained_intron MGP_CASTEiJ_T0022577.1 MGP_CASTEiJ_G0016058.1 mouse_genomes_project 1 170728955 170732389 + Aldh9a1 protein_coding retained_intron MGP_CASTEiJ_T0020292.1 MGP_CASTEiJ_G0015591.1 mouse_genomes_project 1 85974560 85984509 + MGP_CASTEiJ_P0020292 2810459M11Rik protein_coding protein_coding MGP_CASTEiJ_T0020293.1 MGP_CASTEiJ_G0015591.1 mouse_genomes_project 1 85974560 85982397 + MGP_CASTEiJ_P0020293 2810459M11Rik protein_coding protein_coding MGP_CASTEiJ_T0000366.1 MGP_CASTEiJ_G0000315.1 mouse_genomes_project 1 20972327 20973050 - TEC TEC MGP_CASTEiJ_T0000367.1 MGP_CASTEiJ_G0000315.1 mouse_genomes_project 1 20972629 20973049 - TEC TEC MGP_CASTEiJ_T0099102.1 MGP_CASTEiJ_G0036015.1 mouse_genomes_project 1 94340838 94340940 - Gm22089 snRNA snRNA MGP_CASTEiJ_T0011634.1 MGP_CASTEiJ_G0009797.1 mouse_genomes_project 1 28738528 28738816 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000439.1 MGP_CASTEiJ_G0000385.1 mouse_genomes_project 1 53662354 53665083 - TEC TEC MGP_CASTEiJ_T0022324.1 MGP_CASTEiJ_G0016005.1 mouse_genomes_project 1 165774553 165791032 - MGP_CASTEiJ_P0022324 Mettl13 protein_coding protein_coding MGP_CASTEiJ_T0022325.1 MGP_CASTEiJ_G0016005.1 mouse_genomes_project 1 165776110 165791003 - MGP_CASTEiJ_P0022325 Mettl13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022326.1 MGP_CASTEiJ_G0016005.1 mouse_genomes_project 1 165778280 165786833 - MGP_CASTEiJ_P0022326 Mettl13 protein_coding protein_coding MGP_CASTEiJ_T0022327.1 MGP_CASTEiJ_G0016005.1 mouse_genomes_project 1 165779589 165790739 - Mettl13 protein_coding processed_transcript MGP_CASTEiJ_T0022328.1 MGP_CASTEiJ_G0016005.1 mouse_genomes_project 1 165781386 165788979 - MGP_CASTEiJ_P0022328 Mettl13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022329.1 MGP_CASTEiJ_G0016005.1 mouse_genomes_project 1 165783921 165791019 - Mettl13 protein_coding retained_intron MGP_CASTEiJ_T0022330.1 MGP_CASTEiJ_G0016005.1 mouse_genomes_project 1 165786107 165791009 - Mettl13 protein_coding retained_intron MGP_CASTEiJ_T0022331.1 MGP_CASTEiJ_G0016005.1 mouse_genomes_project 1 165789278 165791010 - Mettl13 protein_coding retained_intron MGP_CASTEiJ_T0005834.1 MGP_CASTEiJ_G0004902.1 mouse_genomes_project 1 180264870 180268425 + Gm38101 lincRNA lincRNA MGP_CASTEiJ_T0022623.1 MGP_CASTEiJ_G0016071.1 mouse_genomes_project 1 173657448 173678699 - MGP_CASTEiJ_P0022623 Uhmk1 protein_coding protein_coding MGP_CASTEiJ_T0022624.1 MGP_CASTEiJ_G0016071.1 mouse_genomes_project 1 173658537 173679205 - MGP_CASTEiJ_P0022624 Uhmk1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0000712.1 MGP_CASTEiJ_G0000656.1 mouse_genomes_project 1 180898468 180899199 + TEC TEC MGP_CASTEiJ_T0023592.1 MGP_CASTEiJ_G0016300.1 mouse_genomes_project 1 197884327 198032989 - MGP_CASTEiJ_P0023592 Syt14 protein_coding protein_coding MGP_CASTEiJ_T0023593.1 MGP_CASTEiJ_G0016300.1 mouse_genomes_project 1 197889080 198032876 - MGP_CASTEiJ_P0023593 Syt14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023594.1 MGP_CASTEiJ_G0016300.1 mouse_genomes_project 1 197890307 198032931 - MGP_CASTEiJ_P0023594 Syt14 protein_coding protein_coding MGP_CASTEiJ_T0023595.1 MGP_CASTEiJ_G0016300.1 mouse_genomes_project 1 197926966 198032858 - Syt14 protein_coding retained_intron MGP_CASTEiJ_T0022011.1 MGP_CASTEiJ_G0015955.1 mouse_genomes_project 1 157936271 157939545 - MGP_CASTEiJ_P0022011 Ier5 protein_coding protein_coding MGP_CASTEiJ_T0011804.1 MGP_CASTEiJ_G0009967.1 mouse_genomes_project 1 86751499 86751921 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000764.1 MGP_CASTEiJ_G0000705.1 mouse_genomes_project 1 198504549 198506644 + TEC TEC MGP_CASTEiJ_T0022998.1 MGP_CASTEiJ_G0016179.1 mouse_genomes_project 1 179561113 179586494 - MGP_CASTEiJ_P0022998 Fh1 protein_coding protein_coding MGP_CASTEiJ_T0022999.1 MGP_CASTEiJ_G0016179.1 mouse_genomes_project 1 179562115 179565159 - Fh1 protein_coding retained_intron MGP_CASTEiJ_T0023000.1 MGP_CASTEiJ_G0016179.1 mouse_genomes_project 1 179562117 179567523 - Fh1 protein_coding retained_intron MGP_CASTEiJ_T0023001.1 MGP_CASTEiJ_G0016179.1 mouse_genomes_project 1 179562123 179570592 - MGP_CASTEiJ_P0023001 Fh1 protein_coding protein_coding MGP_CASTEiJ_T0023002.1 MGP_CASTEiJ_G0016179.1 mouse_genomes_project 1 179575628 179586432 - MGP_CASTEiJ_P0023002 Fh1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011849.1 MGP_CASTEiJ_G0010012.1 mouse_genomes_project 1 109104873 109107336 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098803.1 MGP_CASTEiJ_G0035733.1 mouse_genomes_project 1 163865715 163866355 - Gm37328 sense_intronic sense_intronic MGP_CASTEiJ_T0019483.1 MGP_CASTEiJ_G0015442.1 mouse_genomes_project 1 62603970 62756616 + MGP_CASTEiJ_P0019483 Adam23 protein_coding protein_coding MGP_CASTEiJ_T0019484.1 MGP_CASTEiJ_G0015442.1 mouse_genomes_project 1 62603974 62781116 + MGP_CASTEiJ_P0019484 Adam23 protein_coding protein_coding MGP_CASTEiJ_T0019485.1 MGP_CASTEiJ_G0015442.1 mouse_genomes_project 1 62603989 62750909 + Adam23 protein_coding retained_intron MGP_CASTEiJ_T0019486.1 MGP_CASTEiJ_G0015442.1 mouse_genomes_project 1 62604014 62706535 + Adam23 protein_coding retained_intron MGP_CASTEiJ_T0019487.1 MGP_CASTEiJ_G0015442.1 mouse_genomes_project 1 62604291 62777758 + MGP_CASTEiJ_P0019487 Adam23 protein_coding protein_coding MGP_CASTEiJ_T0019488.1 MGP_CASTEiJ_G0015442.1 mouse_genomes_project 1 62604291 62781116 + MGP_CASTEiJ_P0019488 Adam23 protein_coding protein_coding MGP_CASTEiJ_T0019489.1 MGP_CASTEiJ_G0015442.1 mouse_genomes_project 1 62630410 62718936 + Adam23 protein_coding processed_transcript MGP_CASTEiJ_T0019490.1 MGP_CASTEiJ_G0015442.1 mouse_genomes_project 1 62656775 62781116 + Adam23 protein_coding processed_transcript MGP_CASTEiJ_T0019491.1 MGP_CASTEiJ_G0015442.1 mouse_genomes_project 1 62710663 62714161 + Adam23 protein_coding retained_intron MGP_CASTEiJ_T0019492.1 MGP_CASTEiJ_G0015442.1 mouse_genomes_project 1 62736856 62748727 + Adam23 protein_coding retained_intron MGP_CASTEiJ_T0019493.1 MGP_CASTEiJ_G0015442.1 mouse_genomes_project 1 62762220 62766944 + Adam23 protein_coding retained_intron MGP_CASTEiJ_T0019494.1 MGP_CASTEiJ_G0015442.1 mouse_genomes_project 1 62769787 62777650 + Adam23 protein_coding retained_intron MGP_CASTEiJ_T0011862.1 MGP_CASTEiJ_G0010025.1 mouse_genomes_project 1 113254483 113255151 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000329.1 MGP_CASTEiJ_G0000278.1 mouse_genomes_project 1 4161106 4164041 - TEC TEC MGP_CASTEiJ_T0020807.1 MGP_CASTEiJ_G0015706.1 mouse_genomes_project 1 97670033 97742446 - MGP_CASTEiJ_P0020807 Slco6c1 protein_coding protein_coding MGP_CASTEiJ_T0020808.1 MGP_CASTEiJ_G0015706.1 mouse_genomes_project 1 97670621 97742541 - MGP_CASTEiJ_P0020808 Slco6c1 protein_coding protein_coding MGP_CASTEiJ_T0018751.1 MGP_CASTEiJ_G0015304.1 mouse_genomes_project 1 37141161 37176177 - MGP_CASTEiJ_P0018751 Chst10 protein_coding protein_coding MGP_CASTEiJ_T0018752.1 MGP_CASTEiJ_G0015304.1 mouse_genomes_project 1 37141161 37176098 - MGP_CASTEiJ_P0018752 Chst10 protein_coding protein_coding MGP_CASTEiJ_T0018753.1 MGP_CASTEiJ_G0015304.1 mouse_genomes_project 1 37141169 37148770 - MGP_CASTEiJ_P0018753 Chst10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018754.1 MGP_CASTEiJ_G0015304.1 mouse_genomes_project 1 37141171 37176249 - MGP_CASTEiJ_P0018754 Chst10 protein_coding protein_coding MGP_CASTEiJ_T0018755.1 MGP_CASTEiJ_G0015304.1 mouse_genomes_project 1 37147153 37176241 - MGP_CASTEiJ_P0018755 Chst10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018756.1 MGP_CASTEiJ_G0015304.1 mouse_genomes_project 1 37150989 37176222 - MGP_CASTEiJ_P0018756 Chst10 protein_coding protein_coding MGP_CASTEiJ_T0018757.1 MGP_CASTEiJ_G0015304.1 mouse_genomes_project 1 37168889 37176074 - Chst10 protein_coding retained_intron MGP_CASTEiJ_T0018758.1 MGP_CASTEiJ_G0015304.1 mouse_genomes_project 1 37168890 37176098 - Chst10 protein_coding retained_intron MGP_CASTEiJ_T0005695.1 MGP_CASTEiJ_G0004790.1 mouse_genomes_project 1 98663115 98680887 + Gm29461 lincRNA lincRNA MGP_CASTEiJ_T0005640.1 MGP_CASTEiJ_G0004742.1 mouse_genomes_project 1 76076742 76188307 + Gm29069 lincRNA lincRNA MGP_CASTEiJ_T0019508.1 MGP_CASTEiJ_G0015448.1 mouse_genomes_project 1 63716863 63782185 + MGP_CASTEiJ_P0019508 Creb1 protein_coding protein_coding MGP_CASTEiJ_T0019509.1 MGP_CASTEiJ_G0015448.1 mouse_genomes_project 1 63716988 63786818 + MGP_CASTEiJ_P0019509 Creb1 protein_coding protein_coding MGP_CASTEiJ_T0019510.1 MGP_CASTEiJ_G0015448.1 mouse_genomes_project 1 63717022 63742850 + Creb1 protein_coding retained_intron MGP_CASTEiJ_T0019511.1 MGP_CASTEiJ_G0015448.1 mouse_genomes_project 1 63717027 63764072 + MGP_CASTEiJ_P0019511 Creb1 protein_coding protein_coding MGP_CASTEiJ_T0019512.1 MGP_CASTEiJ_G0015448.1 mouse_genomes_project 1 63717037 63789034 + MGP_CASTEiJ_P0019512 Creb1 protein_coding protein_coding MGP_CASTEiJ_T0019513.1 MGP_CASTEiJ_G0015448.1 mouse_genomes_project 1 63717050 63760968 + Creb1 protein_coding processed_transcript MGP_CASTEiJ_T0019514.1 MGP_CASTEiJ_G0015448.1 mouse_genomes_project 1 63717077 63781957 + MGP_CASTEiJ_P0019514 Creb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019515.1 MGP_CASTEiJ_G0015448.1 mouse_genomes_project 1 63744471 63746111 + Creb1 protein_coding retained_intron MGP_CASTEiJ_T0019516.1 MGP_CASTEiJ_G0015448.1 mouse_genomes_project 1 63762243 63765007 + Creb1 protein_coding retained_intron MGP_CASTEiJ_T0000463.1 MGP_CASTEiJ_G0000409.1 mouse_genomes_project 1 63925182 63929550 + TEC TEC MGP_CASTEiJ_T0005668.1 MGP_CASTEiJ_G0004765.1 mouse_genomes_project 1 89141113 89149187 - Gm29337 lincRNA lincRNA MGP_CASTEiJ_T0011656.1 MGP_CASTEiJ_G0009819.1 mouse_genomes_project 1 33087721 33087956 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000404.1 MGP_CASTEiJ_G0000350.1 mouse_genomes_project 1 31906558 31908160 - TEC TEC MGP_CASTEiJ_T0005690.1 MGP_CASTEiJ_G0004786.1 mouse_genomes_project 1 96587976 96622019 - 1700063A18Rik lincRNA lincRNA MGP_CASTEiJ_T0009312.1 MGP_CASTEiJ_G0007500.1 mouse_genomes_project 1 180888773 180888853 + Gm25993 miRNA miRNA MGP_CASTEiJ_T0000638.1 MGP_CASTEiJ_G0000582.1 mouse_genomes_project 1 150003195 150007460 + TEC TEC MGP_CASTEiJ_T0020809.1 MGP_CASTEiJ_G0015707.1 mouse_genomes_project 1 98072360 98135364 - MGP_CASTEiJ_P0020809 D1Ertd622e protein_coding protein_coding MGP_CASTEiJ_T0020810.1 MGP_CASTEiJ_G0015707.1 mouse_genomes_project 1 98113362 98135364 - MGP_CASTEiJ_P0020810 D1Ertd622e protein_coding protein_coding MGP_CASTEiJ_T0020811.1 MGP_CASTEiJ_G0015707.1 mouse_genomes_project 1 98113362 98134966 - MGP_CASTEiJ_P0020811 D1Ertd622e protein_coding protein_coding MGP_CASTEiJ_T0005693.1 MGP_CASTEiJ_G0004789.1 mouse_genomes_project 1 98620118 98626764 + 1810006J02Rik lincRNA lincRNA MGP_CASTEiJ_T0005694.1 MGP_CASTEiJ_G0004789.1 mouse_genomes_project 1 98620129 98633189 + 1810006J02Rik lincRNA lincRNA MGP_CASTEiJ_T0011867.1 MGP_CASTEiJ_G0010030.1 mouse_genomes_project 1 117615708 117616105 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000411.1 MGP_CASTEiJ_G0000357.1 mouse_genomes_project 1 34632127 34634285 + TEC TEC MGP_CASTEiJ_T0020993.1 MGP_CASTEiJ_G0015745.1 mouse_genomes_project 1 120257904 120293070 - MGP_CASTEiJ_P0020993 Ralb protein_coding protein_coding MGP_CASTEiJ_T0020994.1 MGP_CASTEiJ_G0015745.1 mouse_genomes_project 1 120259735 120265620 - MGP_CASTEiJ_P0020994 Ralb protein_coding protein_coding MGP_CASTEiJ_T0020995.1 MGP_CASTEiJ_G0015745.1 mouse_genomes_project 1 120268645 120293070 - Ralb protein_coding retained_intron MGP_CASTEiJ_T0000357.1 MGP_CASTEiJ_G0000306.1 mouse_genomes_project 1 13297362 13300513 + TEC TEC MGP_CASTEiJ_T0000365.1 MGP_CASTEiJ_G0000314.1 mouse_genomes_project 1 19493456 19496836 - TEC TEC MGP_CASTEiJ_T0021781.1 MGP_CASTEiJ_G0015910.1 mouse_genomes_project 1 146103179 146130359 - MGP_CASTEiJ_P0021781 Trove2 protein_coding protein_coding MGP_CASTEiJ_T0021782.1 MGP_CASTEiJ_G0015910.1 mouse_genomes_project 1 146108232 146130213 - Trove2 protein_coding retained_intron MGP_CASTEiJ_T0021783.1 MGP_CASTEiJ_G0015910.1 mouse_genomes_project 1 146110048 146130281 - MGP_CASTEiJ_P0021783 Trove2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021797.1 MGP_CASTEiJ_G0015914.1 mouse_genomes_project 1 146598147 146605121 - MGP_CASTEiJ_P0021797 Rgs1 protein_coding protein_coding MGP_CASTEiJ_T0021798.1 MGP_CASTEiJ_G0015914.1 mouse_genomes_project 1 146599094 146604937 - Rgs1 protein_coding retained_intron MGP_CASTEiJ_T0021799.1 MGP_CASTEiJ_G0015914.1 mouse_genomes_project 1 146599853 146604941 - MGP_CASTEiJ_P0021799 Rgs1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021800.1 MGP_CASTEiJ_G0015914.1 mouse_genomes_project 1 146600476 146604941 - MGP_CASTEiJ_P0021800 Rgs1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021801.1 MGP_CASTEiJ_G0015914.1 mouse_genomes_project 1 146600553 146604909 - MGP_CASTEiJ_P0021801 Rgs1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021802.1 MGP_CASTEiJ_G0015914.1 mouse_genomes_project 1 146600553 146604939 - MGP_CASTEiJ_P0021802 Rgs1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021803.1 MGP_CASTEiJ_G0015914.1 mouse_genomes_project 1 146601343 146604940 - MGP_CASTEiJ_P0021803 Rgs1 protein_coding protein_coding MGP_CASTEiJ_T0021804.1 MGP_CASTEiJ_G0015914.1 mouse_genomes_project 1 146603673 146604939 - Rgs1 protein_coding retained_intron MGP_CASTEiJ_T0021805.1 MGP_CASTEiJ_G0015914.1 mouse_genomes_project 1 146603676 146604942 - Rgs1 protein_coding retained_intron MGP_CASTEiJ_T0000557.1 MGP_CASTEiJ_G0000503.1 mouse_genomes_project 1 122171883 122172553 - TEC TEC MGP_CASTEiJ_T0009268.1 MGP_CASTEiJ_G0007456.1 mouse_genomes_project 1 85657898 85658025 + Mir8096 miRNA miRNA MGP_CASTEiJ_T0019069.1 MGP_CASTEiJ_G0015366.1 mouse_genomes_project 1 51796566 51804643 + MGP_CASTEiJ_P0019069 Mstn protein_coding protein_coding MGP_CASTEiJ_T0019070.1 MGP_CASTEiJ_G0015366.1 mouse_genomes_project 1 51796583 51804609 + MGP_CASTEiJ_P0019070 Mstn protein_coding protein_coding MGP_CASTEiJ_T0020562.1 MGP_CASTEiJ_G0015654.1 mouse_genomes_project 1 91663719 91688508 + protein_coding retained_intron MGP_CASTEiJ_T0020563.1 MGP_CASTEiJ_G0015654.1 mouse_genomes_project 1 91664071 91678514 + MGP_CASTEiJ_P0020563 protein_coding protein_coding MGP_CASTEiJ_T0020564.1 MGP_CASTEiJ_G0015654.1 mouse_genomes_project 1 91664192 91700314 + MGP_CASTEiJ_P0020564 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020565.1 MGP_CASTEiJ_G0015654.1 mouse_genomes_project 1 91677866 91689495 + protein_coding retained_intron MGP_CASTEiJ_T0020566.1 MGP_CASTEiJ_G0015654.1 mouse_genomes_project 1 91687977 91689603 + protein_coding retained_intron MGP_CASTEiJ_T0020567.1 MGP_CASTEiJ_G0015654.1 mouse_genomes_project 1 91689144 91700350 + protein_coding retained_intron MGP_CASTEiJ_T0020568.1 MGP_CASTEiJ_G0015654.1 mouse_genomes_project 1 91696701 91699975 + protein_coding retained_intron MGP_CASTEiJ_T0019283.1 MGP_CASTEiJ_G0015408.1 mouse_genomes_project 1 57510210 57556553 + MGP_CASTEiJ_P0019283 protein_coding protein_coding MGP_CASTEiJ_T0000434.1 MGP_CASTEiJ_G0000380.1 mouse_genomes_project 1 50224330 50226750 - TEC TEC MGP_CASTEiJ_T0022342.1 MGP_CASTEiJ_G0016009.1 mouse_genomes_project 1 165920483 165992681 - MGP_CASTEiJ_P0022342 Prrc2c protein_coding protein_coding MGP_CASTEiJ_T0022343.1 MGP_CASTEiJ_G0016009.1 mouse_genomes_project 1 165920485 165992712 - MGP_CASTEiJ_P0022343 Prrc2c protein_coding protein_coding MGP_CASTEiJ_T0022344.1 MGP_CASTEiJ_G0016009.1 mouse_genomes_project 1 165924154 165992637 - MGP_CASTEiJ_P0022344 Prrc2c protein_coding protein_coding MGP_CASTEiJ_T0022345.1 MGP_CASTEiJ_G0016009.1 mouse_genomes_project 1 165924200 165992706 - MGP_CASTEiJ_P0022345 Prrc2c protein_coding protein_coding MGP_CASTEiJ_T0022346.1 MGP_CASTEiJ_G0016009.1 mouse_genomes_project 1 165926365 165992704 - MGP_CASTEiJ_P0022346 Prrc2c protein_coding unknown_likely_coding MGP_CASTEiJ_T0022347.1 MGP_CASTEiJ_G0016009.1 mouse_genomes_project 1 165934548 165938978 - Prrc2c protein_coding retained_intron MGP_CASTEiJ_T0022348.1 MGP_CASTEiJ_G0016009.1 mouse_genomes_project 1 165961223 165992560 - MGP_CASTEiJ_P0022348 Prrc2c protein_coding protein_coding MGP_CASTEiJ_T0022349.1 MGP_CASTEiJ_G0016009.1 mouse_genomes_project 1 165963657 165964867 - Prrc2c protein_coding retained_intron MGP_CASTEiJ_T0022350.1 MGP_CASTEiJ_G0016009.1 mouse_genomes_project 1 165970706 165992653 - Prrc2c protein_coding retained_intron MGP_CASTEiJ_T0022351.1 MGP_CASTEiJ_G0016009.1 mouse_genomes_project 1 165971357 165992506 - MGP_CASTEiJ_P0022351 Prrc2c protein_coding protein_coding MGP_CASTEiJ_T0022352.1 MGP_CASTEiJ_G0016009.1 mouse_genomes_project 1 165973711 165975676 - Prrc2c protein_coding retained_intron MGP_CASTEiJ_T0022353.1 MGP_CASTEiJ_G0016009.1 mouse_genomes_project 1 165979398 165981500 - Prrc2c protein_coding retained_intron MGP_CASTEiJ_T0022354.1 MGP_CASTEiJ_G0016009.1 mouse_genomes_project 1 165981035 165992643 - Prrc2c protein_coding processed_transcript MGP_CASTEiJ_T0020328.1 MGP_CASTEiJ_G0015599.1 mouse_genomes_project 1 86385976 86387610 + MGP_CASTEiJ_P0020328 1700019O17Rik protein_coding protein_coding MGP_CASTEiJ_T0020362.1 MGP_CASTEiJ_G0015610.1 mouse_genomes_project 1 87198275 87199439 + Chrnd protein_coding retained_intron MGP_CASTEiJ_T0020363.1 MGP_CASTEiJ_G0015610.1 mouse_genomes_project 1 87198305 87208810 + MGP_CASTEiJ_P0020363 Chrnd protein_coding protein_coding MGP_CASTEiJ_T0020364.1 MGP_CASTEiJ_G0015610.1 mouse_genomes_project 1 87198512 87208809 + MGP_CASTEiJ_P0020364 Chrnd protein_coding protein_coding MGP_CASTEiJ_T0000615.1 MGP_CASTEiJ_G0000560.1 mouse_genomes_project 1 139787375 139790408 + TEC TEC MGP_CASTEiJ_T0000616.1 MGP_CASTEiJ_G0000560.1 mouse_genomes_project 1 139788294 139790408 + TEC TEC MGP_CASTEiJ_T0002736.1 MGP_CASTEiJ_G0002598.1 mouse_genomes_project 1 74902020 74905093 + Gm28902 antisense antisense MGP_CASTEiJ_T0020280.1 MGP_CASTEiJ_G0015589.1 mouse_genomes_project 1 85860450 85883175 - MGP_CASTEiJ_P0020280 Gpr55 protein_coding protein_coding MGP_CASTEiJ_T0020525.1 MGP_CASTEiJ_G0015647.1 mouse_genomes_project 1 91142966 91230012 - MGP_CASTEiJ_P0020525 Col6a3 protein_coding protein_coding MGP_CASTEiJ_T0020526.1 MGP_CASTEiJ_G0015647.1 mouse_genomes_project 1 91142966 91230012 - MGP_CASTEiJ_P0020526 Col6a3 protein_coding protein_coding MGP_CASTEiJ_T0020527.1 MGP_CASTEiJ_G0015647.1 mouse_genomes_project 1 91143929 91229993 - MGP_CASTEiJ_P0020527 Col6a3 protein_coding protein_coding MGP_CASTEiJ_T0020528.1 MGP_CASTEiJ_G0015647.1 mouse_genomes_project 1 91144458 91150421 - Col6a3 protein_coding retained_intron MGP_CASTEiJ_T0020529.1 MGP_CASTEiJ_G0015647.1 mouse_genomes_project 1 91171481 91189295 - Col6a3 protein_coding retained_intron MGP_CASTEiJ_T0020530.1 MGP_CASTEiJ_G0015647.1 mouse_genomes_project 1 91173925 91174771 - Col6a3 protein_coding retained_intron MGP_CASTEiJ_T0020531.1 MGP_CASTEiJ_G0015647.1 mouse_genomes_project 1 91182617 91229969 - MGP_CASTEiJ_P0020531 Col6a3 protein_coding protein_coding MGP_CASTEiJ_T0020532.1 MGP_CASTEiJ_G0015647.1 mouse_genomes_project 1 91206320 91230012 - MGP_CASTEiJ_P0020532 Col6a3 protein_coding protein_coding MGP_CASTEiJ_T0009259.1 MGP_CASTEiJ_G0007447.1 mouse_genomes_project 1 74240065 74240142 - Gm25035 miRNA miRNA MGP_CASTEiJ_T0000526.1 MGP_CASTEiJ_G0000472.1 mouse_genomes_project 1 90163208 90165279 + TEC TEC MGP_CASTEiJ_T0011562.1 MGP_CASTEiJ_G0009725.1 mouse_genomes_project 1 4220661 4221316 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011878.1 MGP_CASTEiJ_G0010041.1 mouse_genomes_project 1 120624725 120625088 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023059.1 MGP_CASTEiJ_G0016191.1 mouse_genomes_project 1 181483380 181487266 + MGP_CASTEiJ_P0023059 protein_coding protein_coding MGP_CASTEiJ_T0023060.1 MGP_CASTEiJ_G0016191.1 mouse_genomes_project 1 181483388 181487315 + MGP_CASTEiJ_P0023060 protein_coding protein_coding MGP_CASTEiJ_T0023061.1 MGP_CASTEiJ_G0016191.1 mouse_genomes_project 1 181484817 181487958 + MGP_CASTEiJ_P0023061 protein_coding protein_coding MGP_CASTEiJ_T0023062.1 MGP_CASTEiJ_G0016191.1 mouse_genomes_project 1 181484829 181487756 + MGP_CASTEiJ_P0023062 protein_coding protein_coding MGP_CASTEiJ_T0023063.1 MGP_CASTEiJ_G0016191.1 mouse_genomes_project 1 181484905 181487688 + MGP_CASTEiJ_P0023063 protein_coding protein_coding MGP_CASTEiJ_T0023064.1 MGP_CASTEiJ_G0016191.1 mouse_genomes_project 1 181485799 181486675 + protein_coding processed_transcript MGP_CASTEiJ_T0011894.1 MGP_CASTEiJ_G0010057.1 mouse_genomes_project 1 124841902 124842786 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002838.1 MGP_CASTEiJ_G0002678.1 mouse_genomes_project 1 169160764 169161654 - Gm37469 antisense antisense MGP_CASTEiJ_T0009279.1 MGP_CASTEiJ_G0007467.1 mouse_genomes_project 1 99006501 99006611 + Gm26134 miRNA miRNA MGP_CASTEiJ_T0022758.1 MGP_CASTEiJ_G0016101.1 mouse_genomes_project 1 174883738 174892349 - Nit1 protein_coding retained_intron MGP_CASTEiJ_T0022759.1 MGP_CASTEiJ_G0016101.1 mouse_genomes_project 1 174883738 174892494 - MGP_CASTEiJ_P0022759 Nit1 protein_coding protein_coding MGP_CASTEiJ_T0022760.1 MGP_CASTEiJ_G0016101.1 mouse_genomes_project 1 174886297 174892512 - MGP_CASTEiJ_P0022760 Nit1 protein_coding protein_coding MGP_CASTEiJ_T0022761.1 MGP_CASTEiJ_G0016101.1 mouse_genomes_project 1 174887054 174892506 - Nit1 protein_coding retained_intron MGP_CASTEiJ_T0022762.1 MGP_CASTEiJ_G0016101.1 mouse_genomes_project 1 174887968 174892511 - MGP_CASTEiJ_P0022762 Nit1 protein_coding protein_coding MGP_CASTEiJ_T0022763.1 MGP_CASTEiJ_G0016101.1 mouse_genomes_project 1 174889500 174892491 - MGP_CASTEiJ_P0022763 Nit1 protein_coding protein_coding MGP_CASTEiJ_T0022764.1 MGP_CASTEiJ_G0016101.1 mouse_genomes_project 1 174889555 174891332 - Nit1 protein_coding retained_intron MGP_CASTEiJ_T0022765.1 MGP_CASTEiJ_G0016101.1 mouse_genomes_project 1 174889856 174892511 - MGP_CASTEiJ_P0022765 Nit1 protein_coding protein_coding MGP_CASTEiJ_T0002695.1 MGP_CASTEiJ_G0002570.1 mouse_genomes_project 1 41661390 41662260 + Gm28782 antisense antisense MGP_CASTEiJ_T0099064.1 MGP_CASTEiJ_G0035977.1 mouse_genomes_project 1 1766945 1767052 + Gm22307 snRNA snRNA MGP_CASTEiJ_T0022951.1 MGP_CASTEiJ_G0016153.1 mouse_genomes_project 1 177224765 177233961 - MGP_CASTEiJ_P0022951 protein_coding protein_coding MGP_CASTEiJ_T0020483.1 MGP_CASTEiJ_G0015633.1 mouse_genomes_project 1 88322805 88323856 - MGP_CASTEiJ_P0020483 Dnajb3 protein_coding protein_coding MGP_CASTEiJ_T0020680.1 MGP_CASTEiJ_G0015680.1 mouse_genomes_project 1 93437501 93466805 + MGP_CASTEiJ_P0020680 Gpr35 protein_coding protein_coding MGP_CASTEiJ_T0020681.1 MGP_CASTEiJ_G0015680.1 mouse_genomes_project 1 93442798 93467128 + MGP_CASTEiJ_P0020681 Gpr35 protein_coding protein_coding MGP_CASTEiJ_T0020682.1 MGP_CASTEiJ_G0015680.1 mouse_genomes_project 1 93456360 93469162 + MGP_CASTEiJ_P0020682 Gpr35 protein_coding protein_coding MGP_CASTEiJ_T0020683.1 MGP_CASTEiJ_G0015680.1 mouse_genomes_project 1 93456360 93470390 + MGP_CASTEiJ_P0020683 Gpr35 protein_coding protein_coding MGP_CASTEiJ_T0020684.1 MGP_CASTEiJ_G0015680.1 mouse_genomes_project 1 93458627 93470001 + MGP_CASTEiJ_P0020684 Gpr35 protein_coding protein_coding MGP_CASTEiJ_T0020685.1 MGP_CASTEiJ_G0015680.1 mouse_genomes_project 1 93462907 93470528 + MGP_CASTEiJ_P0020685 Gpr35 protein_coding protein_coding MGP_CASTEiJ_T0020908.1 MGP_CASTEiJ_G0015728.1 mouse_genomes_project 1 107885069 107948255 - MGP_CASTEiJ_P0020908 Serpinb3b protein_coding protein_coding MGP_CASTEiJ_T0020909.1 MGP_CASTEiJ_G0015728.1 mouse_genomes_project 1 107885090 107948255 - MGP_CASTEiJ_P0020909 Serpinb3b protein_coding protein_coding MGP_CASTEiJ_T0000630.1 MGP_CASTEiJ_G0000574.1 mouse_genomes_project 1 143582799 143583289 + TEC TEC MGP_CASTEiJ_T0005855.1 MGP_CASTEiJ_G0004917.1 mouse_genomes_project 1 187490001 187490193 + Gm38079 lincRNA lincRNA MGP_CASTEiJ_T0022312.1 MGP_CASTEiJ_G0016004.1 mouse_genomes_project 1 165199723 165527927 - MGP_CASTEiJ_P0022312 Dnm3 protein_coding protein_coding MGP_CASTEiJ_T0022313.1 MGP_CASTEiJ_G0016004.1 mouse_genomes_project 1 165199728 165202990 - Dnm3 protein_coding retained_intron MGP_CASTEiJ_T0022314.1 MGP_CASTEiJ_G0016004.1 mouse_genomes_project 1 165206133 165720994 - MGP_CASTEiJ_P0022314 Dnm3 protein_coding protein_coding MGP_CASTEiJ_T0022315.1 MGP_CASTEiJ_G0016004.1 mouse_genomes_project 1 165209023 165720994 - MGP_CASTEiJ_P0022315 Dnm3 protein_coding protein_coding MGP_CASTEiJ_T0022316.1 MGP_CASTEiJ_G0016004.1 mouse_genomes_project 1 165210339 165214840 - Dnm3 protein_coding retained_intron MGP_CASTEiJ_T0022317.1 MGP_CASTEiJ_G0016004.1 mouse_genomes_project 1 165225880 165527871 - MGP_CASTEiJ_P0022317 Dnm3 protein_coding protein_coding MGP_CASTEiJ_T0022318.1 MGP_CASTEiJ_G0016004.1 mouse_genomes_project 1 165236815 165356110 - Dnm3 protein_coding retained_intron MGP_CASTEiJ_T0022319.1 MGP_CASTEiJ_G0016004.1 mouse_genomes_project 1 165502893 165527886 - Dnm3 protein_coding processed_transcript MGP_CASTEiJ_T0022320.1 MGP_CASTEiJ_G0016004.1 mouse_genomes_project 1 165513404 165548752 - Dnm3 protein_coding processed_transcript MGP_CASTEiJ_T0022321.1 MGP_CASTEiJ_G0016004.1 mouse_genomes_project 1 165554865 165720972 - Dnm3 protein_coding retained_intron MGP_CASTEiJ_T0022322.1 MGP_CASTEiJ_G0016004.1 mouse_genomes_project 1 165621763 165660139 - Dnm3 protein_coding processed_transcript MGP_CASTEiJ_T0022323.1 MGP_CASTEiJ_G0016004.1 mouse_genomes_project 1 165640036 165642491 - Dnm3 protein_coding retained_intron MGP_CASTEiJ_T0002840.1 MGP_CASTEiJ_G0002680.1 mouse_genomes_project 1 169694758 169695421 - Gm15853 antisense antisense MGP_CASTEiJ_T0020555.1 MGP_CASTEiJ_G0015652.1 mouse_genomes_project 1 91543745 91546425 + Rbm44 protein_coding retained_intron MGP_CASTEiJ_T0020556.1 MGP_CASTEiJ_G0015652.1 mouse_genomes_project 1 91543757 91551392 + MGP_CASTEiJ_P0020556 Rbm44 protein_coding protein_coding MGP_CASTEiJ_T0020557.1 MGP_CASTEiJ_G0015652.1 mouse_genomes_project 1 91543759 91569175 + MGP_CASTEiJ_P0020557 Rbm44 protein_coding protein_coding MGP_CASTEiJ_T0020558.1 MGP_CASTEiJ_G0015652.1 mouse_genomes_project 1 91567006 91568673 + Rbm44 protein_coding retained_intron MGP_CASTEiJ_T0005722.1 MGP_CASTEiJ_G0004811.1 mouse_genomes_project 1 121629806 121634929 + Gm29346 lincRNA lincRNA MGP_CASTEiJ_T0021612.1 MGP_CASTEiJ_G0015878.1 mouse_genomes_project 1 137500190 137514748 + MGP_CASTEiJ_P0021612 Lad1 protein_coding protein_coding MGP_CASTEiJ_T0021613.1 MGP_CASTEiJ_G0015878.1 mouse_genomes_project 1 137511401 137514113 + Lad1 protein_coding processed_transcript MGP_CASTEiJ_T0021614.1 MGP_CASTEiJ_G0015878.1 mouse_genomes_project 1 137511940 137513868 + Lad1 protein_coding processed_transcript MGP_CASTEiJ_T0005504.1 MGP_CASTEiJ_G0004641.1 mouse_genomes_project 1 10032799 10033658 - Gm29663 lincRNA lincRNA MGP_CASTEiJ_T0012005.1 MGP_CASTEiJ_G0010168.1 mouse_genomes_project 1 183777679 183778201 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021822.1 MGP_CASTEiJ_G0015920.1 mouse_genomes_project 1 152843551 152861488 + MGP_CASTEiJ_P0021822 Pdc protein_coding protein_coding MGP_CASTEiJ_T0021823.1 MGP_CASTEiJ_G0015920.1 mouse_genomes_project 1 152843551 152861489 + MGP_CASTEiJ_P0021823 Pdc protein_coding protein_coding MGP_CASTEiJ_T0021824.1 MGP_CASTEiJ_G0015920.1 mouse_genomes_project 1 152843560 152860901 + MGP_CASTEiJ_P0021824 Pdc protein_coding protein_coding MGP_CASTEiJ_T0000421.1 MGP_CASTEiJ_G0000367.1 mouse_genomes_project 1 37726104 37726989 - TEC TEC MGP_CASTEiJ_T0021049.1 MGP_CASTEiJ_G0015759.1 mouse_genomes_project 1 122176142 122191103 - MGP_CASTEiJ_P0021049 Insig2 protein_coding protein_coding MGP_CASTEiJ_T0021050.1 MGP_CASTEiJ_G0015759.1 mouse_genomes_project 1 122177620 122179044 - Insig2 protein_coding retained_intron MGP_CASTEiJ_T0021051.1 MGP_CASTEiJ_G0015759.1 mouse_genomes_project 1 122177651 122199103 - MGP_CASTEiJ_P0021051 Insig2 protein_coding protein_coding MGP_CASTEiJ_T0021052.1 MGP_CASTEiJ_G0015759.1 mouse_genomes_project 1 122178605 122185289 - Insig2 protein_coding retained_intron MGP_CASTEiJ_T0021053.1 MGP_CASTEiJ_G0015759.1 mouse_genomes_project 1 122178662 122199075 - MGP_CASTEiJ_P0021053 Insig2 protein_coding protein_coding MGP_CASTEiJ_T0021054.1 MGP_CASTEiJ_G0015759.1 mouse_genomes_project 1 122178962 122194471 - MGP_CASTEiJ_P0021054 Insig2 protein_coding protein_coding MGP_CASTEiJ_T0021055.1 MGP_CASTEiJ_G0015759.1 mouse_genomes_project 1 122184719 122190991 - Insig2 protein_coding retained_intron MGP_CASTEiJ_T0021056.1 MGP_CASTEiJ_G0015759.1 mouse_genomes_project 1 122190926 122198992 - MGP_CASTEiJ_P0021056 Insig2 protein_coding protein_coding MGP_CASTEiJ_T0021057.1 MGP_CASTEiJ_G0015759.1 mouse_genomes_project 1 122190996 122198998 - MGP_CASTEiJ_P0021057 Insig2 protein_coding protein_coding MGP_CASTEiJ_T0021058.1 MGP_CASTEiJ_G0015759.1 mouse_genomes_project 1 122191023 122203874 - MGP_CASTEiJ_P0021058 Insig2 protein_coding protein_coding MGP_CASTEiJ_T0020114.1 MGP_CASTEiJ_G0015558.1 mouse_genomes_project 1 79411034 79481586 - MGP_CASTEiJ_P0020114 Ap1s3 protein_coding protein_coding MGP_CASTEiJ_T0020115.1 MGP_CASTEiJ_G0015558.1 mouse_genomes_project 1 79411654 79481579 - MGP_CASTEiJ_P0020115 Ap1s3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020116.1 MGP_CASTEiJ_G0015558.1 mouse_genomes_project 1 79411996 79481582 - MGP_CASTEiJ_P0020116 Ap1s3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0002723.1 MGP_CASTEiJ_G0002592.1 mouse_genomes_project 1 71113877 71118527 + Apol7d antisense antisense MGP_CASTEiJ_T0002724.1 MGP_CASTEiJ_G0002592.1 mouse_genomes_project 1 71113928 71123142 + Apol7d antisense antisense MGP_CASTEiJ_T0002725.1 MGP_CASTEiJ_G0002592.1 mouse_genomes_project 1 71114375 71123935 + Apol7d antisense antisense MGP_CASTEiJ_T0002726.1 MGP_CASTEiJ_G0002592.1 mouse_genomes_project 1 71114379 71118316 + Apol7d antisense antisense MGP_CASTEiJ_T0005516.1 MGP_CASTEiJ_G0004653.1 mouse_genomes_project 1 21292988 21317868 + Gm28822 lincRNA lincRNA MGP_CASTEiJ_T0002685.1 MGP_CASTEiJ_G0002562.1 mouse_genomes_project 1 36547156 36551185 + Gm16151 antisense antisense MGP_CASTEiJ_T0011988.1 MGP_CASTEiJ_G0010151.1 mouse_genomes_project 1 173006503 173007087 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005865.1 MGP_CASTEiJ_G0004923.1 mouse_genomes_project 1 188897062 188903086 - Gm37712 lincRNA lincRNA MGP_CASTEiJ_T0022409.1 MGP_CASTEiJ_G0016024.1 mouse_genomes_project 1 167325673 167347865 + MGP_CASTEiJ_P0022409 Sell protein_coding protein_coding MGP_CASTEiJ_T0022410.1 MGP_CASTEiJ_G0016024.1 mouse_genomes_project 1 167325774 167344371 + MGP_CASTEiJ_P0022410 Sell protein_coding protein_coding MGP_CASTEiJ_T0022411.1 MGP_CASTEiJ_G0016024.1 mouse_genomes_project 1 167325878 167343391 + MGP_CASTEiJ_P0022411 Sell protein_coding protein_coding MGP_CASTEiJ_T0022412.1 MGP_CASTEiJ_G0016024.1 mouse_genomes_project 1 167325878 167346591 + MGP_CASTEiJ_P0022412 Sell protein_coding unknown_likely_coding MGP_CASTEiJ_T0022413.1 MGP_CASTEiJ_G0016024.1 mouse_genomes_project 1 167332650 167343695 + MGP_CASTEiJ_P0022413 Sell protein_coding protein_coding MGP_CASTEiJ_T0005575.1 MGP_CASTEiJ_G0004694.1 mouse_genomes_project 1 50203851 50209064 - Gm17767 lincRNA lincRNA MGP_CASTEiJ_T0005576.1 MGP_CASTEiJ_G0004694.1 mouse_genomes_project 1 50206235 50297515 - Gm17767 lincRNA lincRNA MGP_CASTEiJ_T0000440.1 MGP_CASTEiJ_G0000386.1 mouse_genomes_project 1 53811253 53813045 - TEC TEC MGP_CASTEiJ_T0000620.1 MGP_CASTEiJ_G0000564.1 mouse_genomes_project 1 140039204 140045096 - TEC TEC MGP_CASTEiJ_T0021754.1 MGP_CASTEiJ_G0015905.1 mouse_genomes_project 1 142377709 142409831 - MGP_CASTEiJ_P0021754 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021755.1 MGP_CASTEiJ_G0015905.1 mouse_genomes_project 1 142409742 142410369 - protein_coding retained_intron MGP_CASTEiJ_T0101958.1 MGP_CASTEiJ_G0038683.1 mouse_genomes_project 1 185385395 185385506 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0019083.1 MGP_CASTEiJ_G0015371.1 mouse_genomes_project 1 52057191 52069807 + MGP_CASTEiJ_P0019083 Osgepl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019084.1 MGP_CASTEiJ_G0015371.1 mouse_genomes_project 1 52057194 52062198 + Osgepl1 protein_coding retained_intron MGP_CASTEiJ_T0019085.1 MGP_CASTEiJ_G0015371.1 mouse_genomes_project 1 52057194 52060170 + Osgepl1 protein_coding processed_transcript MGP_CASTEiJ_T0019086.1 MGP_CASTEiJ_G0015371.1 mouse_genomes_project 1 52057200 52067621 + MGP_CASTEiJ_P0019086 Osgepl1 protein_coding protein_coding MGP_CASTEiJ_T0019087.1 MGP_CASTEiJ_G0015371.1 mouse_genomes_project 1 52057210 52069800 + MGP_CASTEiJ_P0019087 Osgepl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000580.1 MGP_CASTEiJ_G0000526.1 mouse_genomes_project 1 129353560 129356306 + TEC TEC MGP_CASTEiJ_T0020605.1 MGP_CASTEiJ_G0015662.1 mouse_genomes_project 1 91914226 91950824 + MGP_CASTEiJ_P0020605 Traf3ip1 protein_coding protein_coding MGP_CASTEiJ_T0020606.1 MGP_CASTEiJ_G0015662.1 mouse_genomes_project 1 91914273 91952174 + MGP_CASTEiJ_P0020606 Traf3ip1 protein_coding protein_coding MGP_CASTEiJ_T0020607.1 MGP_CASTEiJ_G0015662.1 mouse_genomes_project 1 91940956 91952174 + Traf3ip1 protein_coding retained_intron MGP_CASTEiJ_T0020038.1 MGP_CASTEiJ_G0015544.1 mouse_genomes_project 1 75115442 75121617 + MGP_CASTEiJ_P0020038 Tmem198 protein_coding protein_coding MGP_CASTEiJ_T0020039.1 MGP_CASTEiJ_G0015544.1 mouse_genomes_project 1 75115486 75118536 + MGP_CASTEiJ_P0020039 Tmem198 protein_coding protein_coding MGP_CASTEiJ_T0020040.1 MGP_CASTEiJ_G0015544.1 mouse_genomes_project 1 75115490 75121629 + MGP_CASTEiJ_P0020040 Tmem198 protein_coding protein_coding MGP_CASTEiJ_T0020041.1 MGP_CASTEiJ_G0015544.1 mouse_genomes_project 1 75115614 75118599 + MGP_CASTEiJ_P0020041 Tmem198 protein_coding protein_coding MGP_CASTEiJ_T0005670.1 MGP_CASTEiJ_G0004767.1 mouse_genomes_project 1 89674731 89722704 - C030007H22Rik lincRNA lincRNA MGP_CASTEiJ_T0000438.1 MGP_CASTEiJ_G0000384.1 mouse_genomes_project 1 53240956 53242615 - TEC TEC MGP_CASTEiJ_T0005658.1 MGP_CASTEiJ_G0004756.1 mouse_genomes_project 1 85682261 85691643 + 9930111H07Rik lincRNA lincRNA MGP_CASTEiJ_T0019654.1 MGP_CASTEiJ_G0015477.1 mouse_genomes_project 1 70456613 70530640 - MGP_CASTEiJ_P0019654 Bard1 protein_coding protein_coding MGP_CASTEiJ_T0011613.1 MGP_CASTEiJ_G0009776.1 mouse_genomes_project 1 19002897 19003093 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100286.1 MGP_CASTEiJ_G0037199.1 mouse_genomes_project 1 66534829 66534958 + Gm26342 snoRNA snoRNA MGP_CASTEiJ_T0020729.1 MGP_CASTEiJ_G0015691.1 mouse_genomes_project 1 93914747 93991444 - MGP_CASTEiJ_P0020729 Hdlbp protein_coding protein_coding MGP_CASTEiJ_T0020730.1 MGP_CASTEiJ_G0015691.1 mouse_genomes_project 1 93916569 93956507 - MGP_CASTEiJ_P0020730 Hdlbp protein_coding protein_coding MGP_CASTEiJ_T0020731.1 MGP_CASTEiJ_G0015691.1 mouse_genomes_project 1 93916809 93951659 - MGP_CASTEiJ_P0020731 Hdlbp protein_coding protein_coding MGP_CASTEiJ_T0020732.1 MGP_CASTEiJ_G0015691.1 mouse_genomes_project 1 93931805 93956536 - MGP_CASTEiJ_P0020732 Hdlbp protein_coding protein_coding MGP_CASTEiJ_T0020733.1 MGP_CASTEiJ_G0015691.1 mouse_genomes_project 1 93937602 93956473 - Hdlbp protein_coding retained_intron MGP_CASTEiJ_T0020734.1 MGP_CASTEiJ_G0015691.1 mouse_genomes_project 1 93940470 93951828 - MGP_CASTEiJ_P0020734 Hdlbp protein_coding protein_coding MGP_CASTEiJ_T0020735.1 MGP_CASTEiJ_G0015691.1 mouse_genomes_project 1 93947999 93956253 - MGP_CASTEiJ_P0020735 Hdlbp protein_coding protein_coding MGP_CASTEiJ_T0020736.1 MGP_CASTEiJ_G0015691.1 mouse_genomes_project 1 93948035 93991458 - MGP_CASTEiJ_P0020736 Hdlbp protein_coding protein_coding MGP_CASTEiJ_T0020737.1 MGP_CASTEiJ_G0015691.1 mouse_genomes_project 1 93951160 93956470 - Hdlbp protein_coding retained_intron MGP_CASTEiJ_T0020738.1 MGP_CASTEiJ_G0015691.1 mouse_genomes_project 1 93951554 93991020 - MGP_CASTEiJ_P0020738 Hdlbp protein_coding protein_coding MGP_CASTEiJ_T0020739.1 MGP_CASTEiJ_G0015691.1 mouse_genomes_project 1 93987831 93991023 - Hdlbp protein_coding retained_intron MGP_CASTEiJ_T0005632.1 MGP_CASTEiJ_G0004737.1 mouse_genomes_project 1 73115515 73119025 - C530043A13Rik lincRNA lincRNA MGP_CASTEiJ_T0005633.1 MGP_CASTEiJ_G0004737.1 mouse_genomes_project 1 73115517 73118858 - C530043A13Rik lincRNA lincRNA MGP_CASTEiJ_T0005634.1 MGP_CASTEiJ_G0004737.1 mouse_genomes_project 1 73116616 73123202 - C530043A13Rik lincRNA lincRNA MGP_CASTEiJ_T0011833.1 MGP_CASTEiJ_G0009996.1 mouse_genomes_project 1 102375540 102375776 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018944.1 MGP_CASTEiJ_G0015346.1 mouse_genomes_project 1 44406307 44438482 + MGP_CASTEiJ_P0018944 Wdr75 protein_coding protein_coding MGP_CASTEiJ_T0018945.1 MGP_CASTEiJ_G0015346.1 mouse_genomes_project 1 44406590 44438467 + Wdr75 protein_coding retained_intron MGP_CASTEiJ_T0018946.1 MGP_CASTEiJ_G0015346.1 mouse_genomes_project 1 44406644 44413528 + Wdr75 protein_coding retained_intron MGP_CASTEiJ_T0018947.1 MGP_CASTEiJ_G0015346.1 mouse_genomes_project 1 44406648 44415100 + MGP_CASTEiJ_P0018947 Wdr75 protein_coding protein_coding MGP_CASTEiJ_T0018948.1 MGP_CASTEiJ_G0015346.1 mouse_genomes_project 1 44413160 44438378 + Wdr75 protein_coding processed_transcript MGP_CASTEiJ_T0018949.1 MGP_CASTEiJ_G0015346.1 mouse_genomes_project 1 44414856 44416626 + Wdr75 protein_coding processed_transcript MGP_CASTEiJ_T0018950.1 MGP_CASTEiJ_G0015346.1 mouse_genomes_project 1 44426658 44438482 + Wdr75 protein_coding retained_intron MGP_CASTEiJ_T0018951.1 MGP_CASTEiJ_G0015346.1 mouse_genomes_project 1 44437132 44438376 + Wdr75 protein_coding retained_intron MGP_CASTEiJ_T0018952.1 MGP_CASTEiJ_G0015346.1 mouse_genomes_project 1 44437424 44438479 + MGP_CASTEiJ_P0018952 Wdr75 protein_coding protein_coding MGP_CASTEiJ_T0016283.1 MGP_CASTEiJ_G0014421.1 mouse_genomes_project 1 89983592 90021447 - 4933400F21Rik processed_transcript antisense MGP_CASTEiJ_T0016284.1 MGP_CASTEiJ_G0014421.1 mouse_genomes_project 1 90013207 90021433 - 4933400F21Rik processed_transcript antisense MGP_CASTEiJ_T0016285.1 MGP_CASTEiJ_G0014421.1 mouse_genomes_project 1 90016942 90021427 - 4933400F21Rik processed_transcript retained_intron MGP_CASTEiJ_T0021540.1 MGP_CASTEiJ_G0015863.1 mouse_genomes_project 1 136589495 136601595 + MGP_CASTEiJ_P0021540 Ube2t protein_coding unknown_likely_coding MGP_CASTEiJ_T0021541.1 MGP_CASTEiJ_G0015863.1 mouse_genomes_project 1 136589593 136601589 + MGP_CASTEiJ_P0021541 Ube2t protein_coding protein_coding MGP_CASTEiJ_T0021542.1 MGP_CASTEiJ_G0015863.1 mouse_genomes_project 1 136589619 136592831 + Ube2t protein_coding retained_intron MGP_CASTEiJ_T0021543.1 MGP_CASTEiJ_G0015863.1 mouse_genomes_project 1 136598275 136601586 + MGP_CASTEiJ_P0021543 Ube2t protein_coding protein_coding MGP_CASTEiJ_T0021544.1 MGP_CASTEiJ_G0015863.1 mouse_genomes_project 1 136599370 136600271 + Ube2t protein_coding retained_intron MGP_CASTEiJ_T0011891.1 MGP_CASTEiJ_G0010054.1 mouse_genomes_project 1 124245010 124247636 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009293.1 MGP_CASTEiJ_G0007481.1 mouse_genomes_project 1 154050301 154050359 + Mir7682 miRNA miRNA MGP_CASTEiJ_T0005714.1 MGP_CASTEiJ_G0004806.1 mouse_genomes_project 1 120099620 120108849 + Gm29455 lincRNA lincRNA MGP_CASTEiJ_T0005715.1 MGP_CASTEiJ_G0004806.1 mouse_genomes_project 1 120099662 120164276 + Gm29455 lincRNA lincRNA MGP_CASTEiJ_T0011577.1 MGP_CASTEiJ_G0009740.1 mouse_genomes_project 1 6675389 6677308 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011561.1 MGP_CASTEiJ_G0009724.1 mouse_genomes_project 1 3662909 3663383 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000623.1 MGP_CASTEiJ_G0000567.1 mouse_genomes_project 1 140446961 140450614 - TEC TEC MGP_CASTEiJ_T0019884.1 MGP_CASTEiJ_G0015525.1 mouse_genomes_project 1 74760184 74765257 + MGP_CASTEiJ_P0019884 Fam134a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019885.1 MGP_CASTEiJ_G0015525.1 mouse_genomes_project 1 74760192 74765261 + MGP_CASTEiJ_P0019885 Fam134a protein_coding protein_coding MGP_CASTEiJ_T0019886.1 MGP_CASTEiJ_G0015525.1 mouse_genomes_project 1 74760200 74765257 + MGP_CASTEiJ_P0019886 Fam134a protein_coding protein_coding MGP_CASTEiJ_T0019887.1 MGP_CASTEiJ_G0015525.1 mouse_genomes_project 1 74760386 74762066 + MGP_CASTEiJ_P0019887 Fam134a protein_coding protein_coding MGP_CASTEiJ_T0019888.1 MGP_CASTEiJ_G0015525.1 mouse_genomes_project 1 74760571 74765255 + MGP_CASTEiJ_P0019888 Fam134a protein_coding protein_coding MGP_CASTEiJ_T0019889.1 MGP_CASTEiJ_G0015525.1 mouse_genomes_project 1 74760588 74761779 + MGP_CASTEiJ_P0019889 Fam134a protein_coding protein_coding MGP_CASTEiJ_T0019890.1 MGP_CASTEiJ_G0015525.1 mouse_genomes_project 1 74760784 74761511 + Fam134a protein_coding retained_intron MGP_CASTEiJ_T0019891.1 MGP_CASTEiJ_G0015525.1 mouse_genomes_project 1 74762659 74763109 + MGP_CASTEiJ_P0019891 Fam134a protein_coding protein_coding MGP_CASTEiJ_T0018298.1 MGP_CASTEiJ_G0015212.1 mouse_genomes_project 1 14405935 14452009 - MGP_CASTEiJ_P0018298 Jph1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018299.1 MGP_CASTEiJ_G0015212.1 mouse_genomes_project 1 14442763 14542864 - MGP_CASTEiJ_P0018299 Jph1 protein_coding protein_coding MGP_CASTEiJ_T0101485.1 MGP_CASTEiJ_G0038396.1 mouse_genomes_project 1 44632783 44644765 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101486.1 MGP_CASTEiJ_G0038396.1 mouse_genomes_project 1 44643958 44644574 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0005792.1 MGP_CASTEiJ_G0004868.1 mouse_genomes_project 1 159874471 159962874 - Gm28694 lincRNA lincRNA MGP_CASTEiJ_T0019147.1 MGP_CASTEiJ_G0015383.1 mouse_genomes_project 1 53855464 53858645 + MGP_CASTEiJ_P0019147 Hspe1 protein_coding protein_coding MGP_CASTEiJ_T0019148.1 MGP_CASTEiJ_G0015383.1 mouse_genomes_project 1 53855646 53857254 + Hspe1 protein_coding retained_intron MGP_CASTEiJ_T0099103.1 MGP_CASTEiJ_G0036016.1 mouse_genomes_project 1 97230238 97230345 + Gm26245 snRNA snRNA MGP_CASTEiJ_T0000743.1 MGP_CASTEiJ_G0000685.1 mouse_genomes_project 1 190743713 190743906 - TEC TEC MGP_CASTEiJ_T0002748.1 MGP_CASTEiJ_G0002609.1 mouse_genomes_project 1 88591648 88597087 - 4930453O03Rik antisense antisense MGP_CASTEiJ_T0005718.1 MGP_CASTEiJ_G0004808.1 mouse_genomes_project 1 120711991 120715975 + Gm28209 lincRNA lincRNA MGP_CASTEiJ_T0002873.1 MGP_CASTEiJ_G0002707.1 mouse_genomes_project 1 191397248 191398590 + Gm29491 antisense antisense MGP_CASTEiJ_T0023096.1 MGP_CASTEiJ_G0016201.1 mouse_genomes_project 1 183766134 183785565 - MGP_CASTEiJ_P0023096 protein_coding protein_coding MGP_CASTEiJ_T0023098.1 MGP_CASTEiJ_G0016201.1 mouse_genomes_project 1 183768221 183772950 - protein_coding processed_transcript MGP_CASTEiJ_T0023099.1 MGP_CASTEiJ_G0016201.1 mouse_genomes_project 1 183768582 183772980 - protein_coding processed_transcript MGP_CASTEiJ_T0023100.1 MGP_CASTEiJ_G0016201.1 mouse_genomes_project 1 183770617 183785515 - protein_coding processed_transcript MGP_CASTEiJ_T0023101.1 MGP_CASTEiJ_G0016201.1 mouse_genomes_project 1 183772937 183785190 - protein_coding processed_transcript MGP_CASTEiJ_T0005831.1 MGP_CASTEiJ_G0004899.1 mouse_genomes_project 1 174865296 174872279 - Gm20045 lincRNA lincRNA MGP_CASTEiJ_T0005595.1 MGP_CASTEiJ_G0004709.1 mouse_genomes_project 1 60318408 60324630 - Gm28083 lincRNA lincRNA MGP_CASTEiJ_T0011987.1 MGP_CASTEiJ_G0010150.1 mouse_genomes_project 1 172867028 172867370 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011888.1 MGP_CASTEiJ_G0010051.1 mouse_genomes_project 1 123766105 123766482 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011611.1 MGP_CASTEiJ_G0009774.1 mouse_genomes_project 1 18514099 18515302 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022076.1 MGP_CASTEiJ_G0015965.1 mouse_genomes_project 1 158929403 158963072 + MGP_CASTEiJ_P0022076 Tor1aip2 protein_coding protein_coding MGP_CASTEiJ_T0022077.1 MGP_CASTEiJ_G0015965.1 mouse_genomes_project 1 158929772 158953676 + MGP_CASTEiJ_P0022077 Tor1aip2 protein_coding protein_coding MGP_CASTEiJ_T0022078.1 MGP_CASTEiJ_G0015965.1 mouse_genomes_project 1 158930133 158947866 + MGP_CASTEiJ_P0022078 Tor1aip2 protein_coding protein_coding MGP_CASTEiJ_T0022079.1 MGP_CASTEiJ_G0015965.1 mouse_genomes_project 1 158934908 158945799 + Tor1aip2 protein_coding processed_transcript MGP_CASTEiJ_T0022080.1 MGP_CASTEiJ_G0015965.1 mouse_genomes_project 1 158934908 158963072 + MGP_CASTEiJ_P0022080 Tor1aip2 protein_coding protein_coding MGP_CASTEiJ_T0022081.1 MGP_CASTEiJ_G0015965.1 mouse_genomes_project 1 158957430 158959040 + Tor1aip2 protein_coding retained_intron MGP_CASTEiJ_T0020493.1 MGP_CASTEiJ_G0015639.1 mouse_genomes_project 1 88966836 88970840 - MGP_CASTEiJ_P0020493 Arl4c protein_coding protein_coding MGP_CASTEiJ_T0011675.1 MGP_CASTEiJ_G0009838.1 mouse_genomes_project 1 43564319 43565064 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018446.1 MGP_CASTEiJ_G0015252.1 mouse_genomes_project 1 30542135 30545477 - MGP_CASTEiJ_P0018446 protein_coding protein_coding MGP_CASTEiJ_T0021067.1 MGP_CASTEiJ_G0015762.1 mouse_genomes_project 1 122440903 122455085 - MGP_CASTEiJ_P0021067 Ddx18 protein_coding protein_coding MGP_CASTEiJ_T0021068.1 MGP_CASTEiJ_G0015762.1 mouse_genomes_project 1 122442200 122446357 - Ddx18 protein_coding retained_intron MGP_CASTEiJ_T0021069.1 MGP_CASTEiJ_G0015762.1 mouse_genomes_project 1 122444457 122447414 - MGP_CASTEiJ_P0021069 Ddx18 protein_coding protein_coding MGP_CASTEiJ_T0021070.1 MGP_CASTEiJ_G0015762.1 mouse_genomes_project 1 122451687 122454818 - Ddx18 protein_coding processed_transcript MGP_CASTEiJ_T0009267.1 MGP_CASTEiJ_G0007455.1 mouse_genomes_project 1 84711579 84711656 + Mir5126 miRNA miRNA MGP_CASTEiJ_T0101916.1 MGP_CASTEiJ_G0038641.1 mouse_genomes_project 1 87075957 87078986 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0021668.1 MGP_CASTEiJ_G0015888.1 mouse_genomes_project 1 137969442 137970519 - MGP_CASTEiJ_P0021668 Gpr25 protein_coding protein_coding MGP_CASTEiJ_T0100263.1 MGP_CASTEiJ_G0037176.1 mouse_genomes_project 1 33266890 33267018 - Gm25096 snoRNA snoRNA MGP_CASTEiJ_T0099142.1 MGP_CASTEiJ_G0036055.1 mouse_genomes_project 1 182554554 182554660 + Gm24919 snRNA snRNA MGP_CASTEiJ_T0099093.1 MGP_CASTEiJ_G0036006.1 mouse_genomes_project 1 66107951 66108014 + Gm27934 snRNA snRNA MGP_CASTEiJ_T0005746.1 MGP_CASTEiJ_G0004831.1 mouse_genomes_project 1 135379871 135385409 + lincRNA lincRNA MGP_CASTEiJ_T0002674.1 MGP_CASTEiJ_G0002553.1 mouse_genomes_project 1 32904567 32907162 - Gm38336 antisense antisense MGP_CASTEiJ_T0022603.1 MGP_CASTEiJ_G0016068.1 mouse_genomes_project 1 173402605 173424034 - MGP_CASTEiJ_P0022603 Hsd17b7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022604.1 MGP_CASTEiJ_G0016068.1 mouse_genomes_project 1 173402610 173424032 - MGP_CASTEiJ_P0022604 Hsd17b7 protein_coding protein_coding MGP_CASTEiJ_T0022605.1 MGP_CASTEiJ_G0016068.1 mouse_genomes_project 1 173405932 173420370 - Hsd17b7 protein_coding processed_transcript MGP_CASTEiJ_T0022606.1 MGP_CASTEiJ_G0016068.1 mouse_genomes_project 1 173408560 173424032 - MGP_CASTEiJ_P0022606 Hsd17b7 protein_coding protein_coding MGP_CASTEiJ_T0022607.1 MGP_CASTEiJ_G0016068.1 mouse_genomes_project 1 173412492 173420938 - Hsd17b7 protein_coding processed_transcript MGP_CASTEiJ_T0022794.1 MGP_CASTEiJ_G0016110.1 mouse_genomes_project 1 175069793 175088559 - MGP_CASTEiJ_P0022794 Itln1 protein_coding protein_coding MGP_CASTEiJ_T0021997.1 MGP_CASTEiJ_G0015952.1 mouse_genomes_project 1 156697638 156709264 + MGP_CASTEiJ_P0021997 Glul protein_coding protein_coding MGP_CASTEiJ_T0021998.1 MGP_CASTEiJ_G0015952.1 mouse_genomes_project 1 156698300 156706644 + MGP_CASTEiJ_P0021998 Glul protein_coding protein_coding MGP_CASTEiJ_T0021999.1 MGP_CASTEiJ_G0015952.1 mouse_genomes_project 1 156698862 156705860 + MGP_CASTEiJ_P0021999 Glul protein_coding protein_coding MGP_CASTEiJ_T0022000.1 MGP_CASTEiJ_G0015952.1 mouse_genomes_project 1 156703580 156706533 + Glul protein_coding processed_transcript MGP_CASTEiJ_T0022001.1 MGP_CASTEiJ_G0015952.1 mouse_genomes_project 1 156705546 156706620 + Glul protein_coding retained_intron MGP_CASTEiJ_T0021268.1 MGP_CASTEiJ_G0015805.1 mouse_genomes_project 1 133047525 133077336 + MGP_CASTEiJ_P0021268 Ctse protein_coding protein_coding MGP_CASTEiJ_T0021269.1 MGP_CASTEiJ_G0015805.1 mouse_genomes_project 1 133047713 133077334 + MGP_CASTEiJ_P0021269 Ctse protein_coding protein_coding MGP_CASTEiJ_T0021270.1 MGP_CASTEiJ_G0015805.1 mouse_genomes_project 1 133064878 133068404 + Ctse protein_coding retained_intron MGP_CASTEiJ_T0101922.1 MGP_CASTEiJ_G0038647.1 mouse_genomes_project 1 88305179 88306037 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0022532.1 MGP_CASTEiJ_G0016048.1 mouse_genomes_project 1 169515643 169547327 - MGP_CASTEiJ_P0022532 Mael protein_coding protein_coding MGP_CASTEiJ_T0022533.1 MGP_CASTEiJ_G0016048.1 mouse_genomes_project 1 169515827 169547324 - MGP_CASTEiJ_P0022533 Mael protein_coding protein_coding MGP_CASTEiJ_T0011665.1 MGP_CASTEiJ_G0009828.1 mouse_genomes_project 1 38714283 38714957 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100316.1 MGP_CASTEiJ_G0037229.1 mouse_genomes_project 1 146132220 146132355 + Gm25663 snoRNA snoRNA MGP_CASTEiJ_T0018672.1 MGP_CASTEiJ_G0015290.1 mouse_genomes_project 1 35630549 35638687 + MGP_CASTEiJ_P0018672 Unc50 protein_coding protein_coding MGP_CASTEiJ_T0018673.1 MGP_CASTEiJ_G0015290.1 mouse_genomes_project 1 35630580 35638827 + MGP_CASTEiJ_P0018673 Unc50 protein_coding protein_coding MGP_CASTEiJ_T0018674.1 MGP_CASTEiJ_G0015290.1 mouse_genomes_project 1 35630587 35637181 + MGP_CASTEiJ_P0018674 Unc50 protein_coding protein_coding MGP_CASTEiJ_T0018675.1 MGP_CASTEiJ_G0015290.1 mouse_genomes_project 1 35630596 35636973 + MGP_CASTEiJ_P0018675 Unc50 protein_coding protein_coding MGP_CASTEiJ_T0018676.1 MGP_CASTEiJ_G0015290.1 mouse_genomes_project 1 35630612 35638690 + MGP_CASTEiJ_P0018676 Unc50 protein_coding protein_coding MGP_CASTEiJ_T0018677.1 MGP_CASTEiJ_G0015290.1 mouse_genomes_project 1 35630618 35631963 + MGP_CASTEiJ_P0018677 Unc50 protein_coding protein_coding MGP_CASTEiJ_T0018678.1 MGP_CASTEiJ_G0015290.1 mouse_genomes_project 1 35631752 35637315 + Unc50 protein_coding retained_intron MGP_CASTEiJ_T0020762.1 MGP_CASTEiJ_G0015695.1 mouse_genomes_project 1 94213642 94223703 + MGP_CASTEiJ_P0020762 Bok protein_coding protein_coding MGP_CASTEiJ_T0020763.1 MGP_CASTEiJ_G0015695.1 mouse_genomes_project 1 94213684 94223146 + MGP_CASTEiJ_P0020763 Bok protein_coding protein_coding MGP_CASTEiJ_T0020764.1 MGP_CASTEiJ_G0015695.1 mouse_genomes_project 1 94214245 94222030 + MGP_CASTEiJ_P0020764 Bok protein_coding protein_coding MGP_CASTEiJ_T0020765.1 MGP_CASTEiJ_G0015695.1 mouse_genomes_project 1 94217189 94223405 + MGP_CASTEiJ_P0020765 Bok protein_coding protein_coding MGP_CASTEiJ_T0020766.1 MGP_CASTEiJ_G0015695.1 mouse_genomes_project 1 94221776 94223391 + Bok protein_coding processed_transcript MGP_CASTEiJ_T0023635.1 MGP_CASTEiJ_G0016306.1 mouse_genomes_project 1 198220291 198241593 - MGP_CASTEiJ_P0023635 Hsd11b1 protein_coding protein_coding MGP_CASTEiJ_T0023636.1 MGP_CASTEiJ_G0016306.1 mouse_genomes_project 1 198220339 198240547 - MGP_CASTEiJ_P0023636 Hsd11b1 protein_coding protein_coding MGP_CASTEiJ_T0023637.1 MGP_CASTEiJ_G0016306.1 mouse_genomes_project 1 198220346 198266991 - MGP_CASTEiJ_P0023637 Hsd11b1 protein_coding protein_coding MGP_CASTEiJ_T0023638.1 MGP_CASTEiJ_G0016306.1 mouse_genomes_project 1 198222301 198242533 - MGP_CASTEiJ_P0023638 Hsd11b1 protein_coding protein_coding MGP_CASTEiJ_T0023639.1 MGP_CASTEiJ_G0016306.1 mouse_genomes_project 1 198227938 198239319 - MGP_CASTEiJ_P0023639 Hsd11b1 protein_coding protein_coding MGP_CASTEiJ_T0023640.1 MGP_CASTEiJ_G0016306.1 mouse_genomes_project 1 198235950 198237932 - Hsd11b1 protein_coding retained_intron MGP_CASTEiJ_T0023641.1 MGP_CASTEiJ_G0016306.1 mouse_genomes_project 1 198237178 198240373 - Hsd11b1 protein_coding processed_transcript MGP_CASTEiJ_T0005525.1 MGP_CASTEiJ_G0004661.1 mouse_genomes_project 1 32371071 32371947 - Gm37958 lincRNA lincRNA MGP_CASTEiJ_T0099141.1 MGP_CASTEiJ_G0036054.1 mouse_genomes_project 1 180684659 180684767 + Gm26104 snRNA snRNA MGP_CASTEiJ_T0011703.1 MGP_CASTEiJ_G0009866.1 mouse_genomes_project 1 49152197 49152351 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023343.1 MGP_CASTEiJ_G0016249.1 mouse_genomes_project 1 187920323 187920943 + Hhipl2 protein_coding processed_transcript MGP_CASTEiJ_T0023344.1 MGP_CASTEiJ_G0016249.1 mouse_genomes_project 1 187920575 187940943 + MGP_CASTEiJ_P0023344 Hhipl2 protein_coding protein_coding MGP_CASTEiJ_T0023345.1 MGP_CASTEiJ_G0016249.1 mouse_genomes_project 1 187920672 187927124 + Hhipl2 protein_coding processed_transcript MGP_CASTEiJ_T0023346.1 MGP_CASTEiJ_G0016249.1 mouse_genomes_project 1 187921361 187940950 + MGP_CASTEiJ_P0023346 Hhipl2 protein_coding protein_coding MGP_CASTEiJ_T0002782.1 MGP_CASTEiJ_G0002634.1 mouse_genomes_project 1 132660999 132664396 + Gm28913 antisense antisense MGP_CASTEiJ_T0011564.1 MGP_CASTEiJ_G0009727.1 mouse_genomes_project 1 4309762 4310087 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009303.1 MGP_CASTEiJ_G0007491.1 mouse_genomes_project 1 169024649 169024805 + Gm44458 miRNA miRNA MGP_CASTEiJ_T0012024.1 MGP_CASTEiJ_G0010187.1 mouse_genomes_project 1 194701475 194701737 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011787.1 MGP_CASTEiJ_G0009950.1 mouse_genomes_project 1 79766508 79766989 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000467.1 MGP_CASTEiJ_G0000413.1 mouse_genomes_project 1 66005582 66011317 + TEC TEC MGP_CASTEiJ_T0000320.1 MGP_CASTEiJ_G0000269.1 mouse_genomes_project 1 787522 802687 - TEC TEC MGP_CASTEiJ_T0018809.1 MGP_CASTEiJ_G0015317.1 mouse_genomes_project 1 38585464 38677624 + MGP_CASTEiJ_P0018809 Il1r1 protein_coding protein_coding MGP_CASTEiJ_T0018810.1 MGP_CASTEiJ_G0015317.1 mouse_genomes_project 1 38627631 38637815 + Il1r1 protein_coding processed_transcript MGP_CASTEiJ_T0018811.1 MGP_CASTEiJ_G0015317.1 mouse_genomes_project 1 38632359 38676538 + MGP_CASTEiJ_P0018811 Il1r1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0011706.1 MGP_CASTEiJ_G0009869.1 mouse_genomes_project 1 50642906 50643318 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000536.1 MGP_CASTEiJ_G0000482.1 mouse_genomes_project 1 96236852 96239213 - TEC TEC MGP_CASTEiJ_T0023296.1 MGP_CASTEiJ_G0016239.1 mouse_genomes_project 1 187041414 187087054 + MGP_CASTEiJ_P0023296 Capn8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023297.1 MGP_CASTEiJ_G0016239.1 mouse_genomes_project 1 187043147 187088321 + Capn8 protein_coding processed_transcript MGP_CASTEiJ_T0023298.1 MGP_CASTEiJ_G0016239.1 mouse_genomes_project 1 187043152 187115317 + MGP_CASTEiJ_P0023298 Capn8 protein_coding protein_coding MGP_CASTEiJ_T0023299.1 MGP_CASTEiJ_G0016239.1 mouse_genomes_project 1 187043178 187115205 + MGP_CASTEiJ_P0023299 Capn8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0005593.1 MGP_CASTEiJ_G0004707.1 mouse_genomes_project 1 59796214 59804665 - lincRNA lincRNA MGP_CASTEiJ_T0005631.1 MGP_CASTEiJ_G0004736.1 mouse_genomes_project 1 72995243 73023648 + D530049I02Rik lincRNA lincRNA MGP_CASTEiJ_T0005723.1 MGP_CASTEiJ_G0004812.1 mouse_genomes_project 1 121681160 121701218 + Gm29345 lincRNA lincRNA MGP_CASTEiJ_T0022723.1 MGP_CASTEiJ_G0016097.1 mouse_genomes_project 1 174820376 174825573 - Ppox protein_coding retained_intron MGP_CASTEiJ_T0022724.1 MGP_CASTEiJ_G0016097.1 mouse_genomes_project 1 174821378 174825573 - Ppox protein_coding retained_intron MGP_CASTEiJ_T0022725.1 MGP_CASTEiJ_G0016097.1 mouse_genomes_project 1 174821378 174825573 - MGP_CASTEiJ_P0022725 Ppox protein_coding protein_coding MGP_CASTEiJ_T0022726.1 MGP_CASTEiJ_G0016097.1 mouse_genomes_project 1 174821833 174825146 - MGP_CASTEiJ_P0022726 Ppox protein_coding protein_coding MGP_CASTEiJ_T0022727.1 MGP_CASTEiJ_G0016097.1 mouse_genomes_project 1 174822521 174824214 - Ppox protein_coding retained_intron MGP_CASTEiJ_T0022728.1 MGP_CASTEiJ_G0016097.1 mouse_genomes_project 1 174824247 174824908 - Ppox protein_coding processed_transcript MGP_CASTEiJ_T0022729.1 MGP_CASTEiJ_G0016097.1 mouse_genomes_project 1 174824494 174825573 - Ppox protein_coding retained_intron MGP_CASTEiJ_T0022730.1 MGP_CASTEiJ_G0016097.1 mouse_genomes_project 1 174824750 174825506 - Ppox protein_coding retained_intron MGP_CASTEiJ_T0000735.1 MGP_CASTEiJ_G0000678.1 mouse_genomes_project 1 186457835 186459449 - TEC TEC MGP_CASTEiJ_T0009256.1 MGP_CASTEiJ_G0007444.1 mouse_genomes_project 1 73464360 73464450 - Mir6351 miRNA miRNA MGP_CASTEiJ_T0019863.1 MGP_CASTEiJ_G0015519.1 mouse_genomes_project 1 74556747 74559918 - MGP_CASTEiJ_P0019863 Cryba2 protein_coding protein_coding MGP_CASTEiJ_T0019864.1 MGP_CASTEiJ_G0015519.1 mouse_genomes_project 1 74557340 74559667 - MGP_CASTEiJ_P0019864 Cryba2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012029.1 MGP_CASTEiJ_G0010192.1 mouse_genomes_project 1 196806265 196806601 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021048.1 MGP_CASTEiJ_G0015758.1 mouse_genomes_project 1 121467749 121473291 + MGP_CASTEiJ_P0021048 En1 protein_coding protein_coding MGP_CASTEiJ_T0101926.1 MGP_CASTEiJ_G0038651.1 mouse_genomes_project 1 93058677 93058789 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0020134.1 MGP_CASTEiJ_G0015562.1 mouse_genomes_project 1 79998030 80015341 - MGP_CASTEiJ_P0020134 Fam124b protein_coding protein_coding MGP_CASTEiJ_T0020135.1 MGP_CASTEiJ_G0015562.1 mouse_genomes_project 1 79999636 80019851 - Fam124b protein_coding processed_transcript MGP_CASTEiJ_T0099140.1 MGP_CASTEiJ_G0036053.1 mouse_genomes_project 1 179872286 179872393 + Gm23805 snRNA snRNA MGP_CASTEiJ_T0018092.1 MGP_CASTEiJ_G0015176.1 mouse_genomes_project 1 6833183 6861670 + MGP_CASTEiJ_P0018092 Adhfe1 protein_coding protein_coding MGP_CASTEiJ_T0018093.1 MGP_CASTEiJ_G0015176.1 mouse_genomes_project 1 6833291 6860596 + MGP_CASTEiJ_P0018093 Adhfe1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018094.1 MGP_CASTEiJ_G0015176.1 mouse_genomes_project 1 6833328 6838872 + MGP_CASTEiJ_P0018094 Adhfe1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018095.1 MGP_CASTEiJ_G0015176.1 mouse_genomes_project 1 6833343 6840790 + MGP_CASTEiJ_P0018095 Adhfe1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018096.1 MGP_CASTEiJ_G0015176.1 mouse_genomes_project 1 6833355 6866427 + MGP_CASTEiJ_P0018096 Adhfe1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009262.1 MGP_CASTEiJ_G0007450.1 mouse_genomes_project 1 76166900 76166984 + Mir6343 miRNA miRNA MGP_CASTEiJ_T0000559.1 MGP_CASTEiJ_G0000505.1 mouse_genomes_project 1 122592095 122592844 + TEC TEC MGP_CASTEiJ_T0099033.1 MGP_CASTEiJ_G0035951.1 mouse_genomes_project 1 20744091 20951040 - Gm29506 sense_overlapping sense_overlapping MGP_CASTEiJ_T0100277.1 MGP_CASTEiJ_G0037190.1 mouse_genomes_project 1 58633264 58633348 + Gm26293 snoRNA snoRNA MGP_CASTEiJ_T0020723.1 MGP_CASTEiJ_G0015689.1 mouse_genomes_project 1 93849901 93881586 + MGP_CASTEiJ_P0020723 Ppp1r7 protein_coding protein_coding MGP_CASTEiJ_T0020724.1 MGP_CASTEiJ_G0015689.1 mouse_genomes_project 1 93850704 93859684 + MGP_CASTEiJ_P0020724 Ppp1r7 protein_coding protein_coding MGP_CASTEiJ_T0020725.1 MGP_CASTEiJ_G0015689.1 mouse_genomes_project 1 93850756 93859615 + MGP_CASTEiJ_P0020725 Ppp1r7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011595.1 MGP_CASTEiJ_G0009758.1 mouse_genomes_project 1 13490092 13490646 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000672.1 MGP_CASTEiJ_G0000616.1 mouse_genomes_project 1 163333254 163335128 + TEC TEC MGP_CASTEiJ_T0101908.1 MGP_CASTEiJ_G0038633.1 mouse_genomes_project 1 57869836 57877830 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0020318.1 MGP_CASTEiJ_G0015596.1 mouse_genomes_project 1 86249447 86251325 + B3gnt7 protein_coding retained_intron MGP_CASTEiJ_T0020319.1 MGP_CASTEiJ_G0015596.1 mouse_genomes_project 1 86249849 86253923 + MGP_CASTEiJ_P0020319 B3gnt7 protein_coding protein_coding MGP_CASTEiJ_T0020320.1 MGP_CASTEiJ_G0015596.1 mouse_genomes_project 1 86250146 86252467 + MGP_CASTEiJ_P0020320 B3gnt7 protein_coding protein_coding MGP_CASTEiJ_T0018459.1 MGP_CASTEiJ_G0015255.1 mouse_genomes_project 1 31751785 31768176 - MGP_CASTEiJ_P0018459 Bag2 protein_coding protein_coding MGP_CASTEiJ_T0018460.1 MGP_CASTEiJ_G0015255.1 mouse_genomes_project 1 31752996 31754960 - Bag2 protein_coding retained_intron MGP_CASTEiJ_T0018461.1 MGP_CASTEiJ_G0015255.1 mouse_genomes_project 1 31753059 31768122 - MGP_CASTEiJ_P0018461 Bag2 protein_coding protein_coding MGP_CASTEiJ_T0018462.1 MGP_CASTEiJ_G0015255.1 mouse_genomes_project 1 31762562 31768108 - Bag2 protein_coding retained_intron MGP_CASTEiJ_T0000659.1 MGP_CASTEiJ_G0000603.1 mouse_genomes_project 1 159464230 159469321 + TEC TEC MGP_CASTEiJ_T0005617.1 MGP_CASTEiJ_G0004728.1 mouse_genomes_project 1 71372181 71375258 + Gm8883 lincRNA lincRNA MGP_CASTEiJ_T0005618.1 MGP_CASTEiJ_G0004728.1 mouse_genomes_project 1 71372186 71374789 + Gm8883 lincRNA lincRNA MGP_CASTEiJ_T0005619.1 MGP_CASTEiJ_G0004728.1 mouse_genomes_project 1 71372572 71374641 + Gm8883 lincRNA lincRNA MGP_CASTEiJ_T0022218.1 MGP_CASTEiJ_G0015988.1 mouse_genomes_project 1 163322679 163333187 - MGP_CASTEiJ_P0022218 Cacybp protein_coding protein_coding MGP_CASTEiJ_T0022219.1 MGP_CASTEiJ_G0015988.1 mouse_genomes_project 1 163323674 163333046 - MGP_CASTEiJ_P0022219 Cacybp protein_coding unknown_likely_coding MGP_CASTEiJ_T0022220.1 MGP_CASTEiJ_G0015988.1 mouse_genomes_project 1 163326426 163333117 - MGP_CASTEiJ_P0022220 Cacybp protein_coding protein_coding MGP_CASTEiJ_T0022221.1 MGP_CASTEiJ_G0015988.1 mouse_genomes_project 1 163328397 163333038 - Cacybp protein_coding retained_intron MGP_CASTEiJ_T0020740.1 MGP_CASTEiJ_G0015692.1 mouse_genomes_project 1 93991554 94022495 + MGP_CASTEiJ_P0020740 Sept2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020741.1 MGP_CASTEiJ_G0015692.1 mouse_genomes_project 1 93991606 94023022 + MGP_CASTEiJ_P0020741 Sept2 protein_coding protein_coding MGP_CASTEiJ_T0020742.1 MGP_CASTEiJ_G0015692.1 mouse_genomes_project 1 93991632 94011762 + MGP_CASTEiJ_P0020742 Sept2 protein_coding protein_coding MGP_CASTEiJ_T0020743.1 MGP_CASTEiJ_G0015692.1 mouse_genomes_project 1 93991635 94013167 + MGP_CASTEiJ_P0020743 Sept2 protein_coding protein_coding MGP_CASTEiJ_T0020744.1 MGP_CASTEiJ_G0015692.1 mouse_genomes_project 1 93991663 94010399 + Sept2 protein_coding retained_intron MGP_CASTEiJ_T0020745.1 MGP_CASTEiJ_G0015692.1 mouse_genomes_project 1 93991677 94010005 + MGP_CASTEiJ_P0020745 Sept2 protein_coding protein_coding MGP_CASTEiJ_T0020746.1 MGP_CASTEiJ_G0015692.1 mouse_genomes_project 1 93991701 93995012 + Sept2 protein_coding retained_intron MGP_CASTEiJ_T0020747.1 MGP_CASTEiJ_G0015692.1 mouse_genomes_project 1 93991701 94013171 + MGP_CASTEiJ_P0020747 Sept2 protein_coding protein_coding MGP_CASTEiJ_T0020748.1 MGP_CASTEiJ_G0015692.1 mouse_genomes_project 1 93991750 94013196 + MGP_CASTEiJ_P0020748 Sept2 protein_coding protein_coding MGP_CASTEiJ_T0020749.1 MGP_CASTEiJ_G0015692.1 mouse_genomes_project 1 93991862 94011680 + MGP_CASTEiJ_P0020749 Sept2 protein_coding protein_coding MGP_CASTEiJ_T0020750.1 MGP_CASTEiJ_G0015692.1 mouse_genomes_project 1 93991865 94011762 + MGP_CASTEiJ_P0020750 Sept2 protein_coding protein_coding MGP_CASTEiJ_T0020751.1 MGP_CASTEiJ_G0015692.1 mouse_genomes_project 1 93992115 94013194 + MGP_CASTEiJ_P0020751 Sept2 protein_coding protein_coding MGP_CASTEiJ_T0020752.1 MGP_CASTEiJ_G0015692.1 mouse_genomes_project 1 94017955 94019784 + Sept2 protein_coding retained_intron MGP_CASTEiJ_T0020753.1 MGP_CASTEiJ_G0015692.1 mouse_genomes_project 1 94018330 94020110 + MGP_CASTEiJ_P0020753 Sept2 protein_coding protein_coding MGP_CASTEiJ_T0011866.1 MGP_CASTEiJ_G0010029.1 mouse_genomes_project 1 116119933 116120507 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005644.1 MGP_CASTEiJ_G0004745.1 mouse_genomes_project 1 77250811 77252659 + Gm28386 lincRNA lincRNA MGP_CASTEiJ_T0005752.1 MGP_CASTEiJ_G0004837.1 mouse_genomes_project 1 137961460 137964610 - Gm37552 lincRNA lincRNA MGP_CASTEiJ_T0018098.1 MGP_CASTEiJ_G0015178.1 mouse_genomes_project 1 6966224 6999494 - MGP_CASTEiJ_P0018098 Mybl1 protein_coding protein_coding MGP_CASTEiJ_T0018099.1 MGP_CASTEiJ_G0015178.1 mouse_genomes_project 1 6968294 6999309 - MGP_CASTEiJ_P0018099 Mybl1 protein_coding protein_coding MGP_CASTEiJ_T0018100.1 MGP_CASTEiJ_G0015178.1 mouse_genomes_project 1 6975724 6977992 - Mybl1 protein_coding retained_intron MGP_CASTEiJ_T0018101.1 MGP_CASTEiJ_G0015178.1 mouse_genomes_project 1 6977653 6982828 - Mybl1 protein_coding retained_intron MGP_CASTEiJ_T0018102.1 MGP_CASTEiJ_G0015178.1 mouse_genomes_project 1 6981225 6998939 - MGP_CASTEiJ_P0018102 Mybl1 protein_coding protein_coding MGP_CASTEiJ_T0000569.1 MGP_CASTEiJ_G0000515.1 mouse_genomes_project 1 125453571 125457231 - TEC TEC MGP_CASTEiJ_T0005749.1 MGP_CASTEiJ_G0004834.1 mouse_genomes_project 1 136244596 136248867 - Gm26783 lincRNA lincRNA MGP_CASTEiJ_T0018679.1 MGP_CASTEiJ_G0015291.1 mouse_genomes_project 1 35639042 35750538 - MGP_CASTEiJ_P0018679 Mgat4a protein_coding protein_coding MGP_CASTEiJ_T0018680.1 MGP_CASTEiJ_G0015291.1 mouse_genomes_project 1 35639042 35755328 - MGP_CASTEiJ_P0018680 Mgat4a protein_coding protein_coding MGP_CASTEiJ_T0018681.1 MGP_CASTEiJ_G0015291.1 mouse_genomes_project 1 35639078 35755335 - MGP_CASTEiJ_P0018681 Mgat4a protein_coding protein_coding MGP_CASTEiJ_T0018682.1 MGP_CASTEiJ_G0015291.1 mouse_genomes_project 1 35643418 35750710 - MGP_CASTEiJ_P0018682 Mgat4a protein_coding protein_coding MGP_CASTEiJ_T0018683.1 MGP_CASTEiJ_G0015291.1 mouse_genomes_project 1 35668699 35706238 - MGP_CASTEiJ_P0018683 Mgat4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018684.1 MGP_CASTEiJ_G0015291.1 mouse_genomes_project 1 35668702 35706200 - MGP_CASTEiJ_P0018684 Mgat4a protein_coding protein_coding MGP_CASTEiJ_T0018685.1 MGP_CASTEiJ_G0015291.1 mouse_genomes_project 1 35705830 35708943 - Mgat4a protein_coding retained_intron MGP_CASTEiJ_T0018686.1 MGP_CASTEiJ_G0015291.1 mouse_genomes_project 1 35747513 35750547 - Mgat4a protein_coding retained_intron MGP_CASTEiJ_T0011889.1 MGP_CASTEiJ_G0010052.1 mouse_genomes_project 1 124119920 124121068 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005684.1 MGP_CASTEiJ_G0004781.1 mouse_genomes_project 1 93181283 93184249 - Gm29483 lincRNA lincRNA MGP_CASTEiJ_T0000747.1 MGP_CASTEiJ_G0000689.1 mouse_genomes_project 1 191787641 191789928 - TEC TEC MGP_CASTEiJ_T0011915.1 MGP_CASTEiJ_G0010078.1 mouse_genomes_project 1 140869938 140870575 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011902.1 MGP_CASTEiJ_G0010065.1 mouse_genomes_project 1 131533839 131534258 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011962.1 MGP_CASTEiJ_G0010125.1 mouse_genomes_project 1 160553492 160553647 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005843.1 MGP_CASTEiJ_G0004910.1 mouse_genomes_project 1 185433430 185437003 + Gm37406 lincRNA lincRNA MGP_CASTEiJ_T0000506.1 MGP_CASTEiJ_G0000452.1 mouse_genomes_project 1 84151453 84153044 - TEC TEC MGP_CASTEiJ_T0011883.1 MGP_CASTEiJ_G0010046.1 mouse_genomes_project 1 122390506 122390725 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100329.1 MGP_CASTEiJ_G0037242.1 mouse_genomes_project 1 164199359 164199443 + Mir5117 snoRNA snoRNA MGP_CASTEiJ_T0005680.1 MGP_CASTEiJ_G0004777.1 mouse_genomes_project 1 92038104 92052888 + Gm28380 lincRNA lincRNA MGP_CASTEiJ_T0005638.1 MGP_CASTEiJ_G0004740.1 mouse_genomes_project 1 73349902 73449856 - Gm29183 lincRNA lincRNA MGP_CASTEiJ_T0000755.1 MGP_CASTEiJ_G0000697.1 mouse_genomes_project 1 196230955 196232798 + TEC TEC MGP_CASTEiJ_T0021709.1 MGP_CASTEiJ_G0015895.1 mouse_genomes_project 1 140158657 140174396 + MGP_CASTEiJ_P0021709 Atp6v1g3 protein_coding protein_coding MGP_CASTEiJ_T0022142.1 MGP_CASTEiJ_G0015976.1 mouse_genomes_project 1 160017840 160027400 - MGP_CASTEiJ_P0022142 Tex35 protein_coding protein_coding MGP_CASTEiJ_T0022143.1 MGP_CASTEiJ_G0015976.1 mouse_genomes_project 1 160017840 160027400 - MGP_CASTEiJ_P0022143 Tex35 protein_coding protein_coding MGP_CASTEiJ_T0022144.1 MGP_CASTEiJ_G0015976.1 mouse_genomes_project 1 160017847 160027399 - MGP_CASTEiJ_P0022144 Tex35 protein_coding protein_coding MGP_CASTEiJ_T0022145.1 MGP_CASTEiJ_G0015976.1 mouse_genomes_project 1 160017854 160027430 - MGP_CASTEiJ_P0022145 Tex35 protein_coding protein_coding MGP_CASTEiJ_T0022146.1 MGP_CASTEiJ_G0015976.1 mouse_genomes_project 1 160018013 160027138 - MGP_CASTEiJ_P0022146 Tex35 protein_coding protein_coding MGP_CASTEiJ_T0022147.1 MGP_CASTEiJ_G0015976.1 mouse_genomes_project 1 160018015 160027395 - MGP_CASTEiJ_P0022147 Tex35 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011704.1 MGP_CASTEiJ_G0009867.1 mouse_genomes_project 1 50002323 50003349 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021455.1 MGP_CASTEiJ_G0015843.1 mouse_genomes_project 1 135449141 135453341 - Optc protein_coding retained_intron MGP_CASTEiJ_T0021456.1 MGP_CASTEiJ_G0015843.1 mouse_genomes_project 1 135449141 135459220 - MGP_CASTEiJ_P0021456 Optc protein_coding protein_coding MGP_CASTEiJ_T0021457.1 MGP_CASTEiJ_G0015843.1 mouse_genomes_project 1 135449142 135460043 - MGP_CASTEiJ_P0021457 Optc protein_coding protein_coding MGP_CASTEiJ_T0021458.1 MGP_CASTEiJ_G0015843.1 mouse_genomes_project 1 135449639 135459174 - MGP_CASTEiJ_P0021458 Optc protein_coding protein_coding MGP_CASTEiJ_T0021459.1 MGP_CASTEiJ_G0015843.1 mouse_genomes_project 1 135452846 135459050 - MGP_CASTEiJ_P0021459 Optc protein_coding protein_coding MGP_CASTEiJ_T0002881.1 MGP_CASTEiJ_G0002714.1 mouse_genomes_project 1 194707423 194710882 - Gm26574 antisense antisense MGP_CASTEiJ_T0005624.1 MGP_CASTEiJ_G0004732.1 mouse_genomes_project 1 71614541 71630973 - Gm4319 lincRNA lincRNA MGP_CASTEiJ_T0020160.1 MGP_CASTEiJ_G0015568.1 mouse_genomes_project 1 82218186 82224989 - MGP_CASTEiJ_P0020160 Irs1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0000750.1 MGP_CASTEiJ_G0000692.1 mouse_genomes_project 1 192404051 192404544 - TEC TEC MGP_CASTEiJ_T0019827.1 MGP_CASTEiJ_G0015511.1 mouse_genomes_project 1 74255241 74291095 + MGP_CASTEiJ_P0019827 Stk36 protein_coding protein_coding MGP_CASTEiJ_T0019828.1 MGP_CASTEiJ_G0015511.1 mouse_genomes_project 1 74255276 74291092 + Stk36 protein_coding retained_intron MGP_CASTEiJ_T0019829.1 MGP_CASTEiJ_G0015511.1 mouse_genomes_project 1 74255299 74288280 + MGP_CASTEiJ_P0019829 Stk36 protein_coding protein_coding MGP_CASTEiJ_T0019830.1 MGP_CASTEiJ_G0015511.1 mouse_genomes_project 1 74255310 74259355 + MGP_CASTEiJ_P0019830 Stk36 protein_coding protein_coding MGP_CASTEiJ_T0019831.1 MGP_CASTEiJ_G0015511.1 mouse_genomes_project 1 74255435 74290243 + MGP_CASTEiJ_P0019831 Stk36 protein_coding protein_coding MGP_CASTEiJ_T0019832.1 MGP_CASTEiJ_G0015511.1 mouse_genomes_project 1 74257042 74262089 + MGP_CASTEiJ_P0019832 Stk36 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019833.1 MGP_CASTEiJ_G0015511.1 mouse_genomes_project 1 74274774 74278314 + Stk36 protein_coding retained_intron MGP_CASTEiJ_T0019834.1 MGP_CASTEiJ_G0015511.1 mouse_genomes_project 1 74275237 74290286 + Stk36 protein_coding processed_transcript MGP_CASTEiJ_T0019835.1 MGP_CASTEiJ_G0015511.1 mouse_genomes_project 1 74278867 74291095 + Stk36 protein_coding retained_intron MGP_CASTEiJ_T0011662.1 MGP_CASTEiJ_G0009825.1 mouse_genomes_project 1 37186563 37187335 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022793.1 MGP_CASTEiJ_G0016109.1 mouse_genomes_project 1 175051697 175052962 + MGP_CASTEiJ_P0022793 Alyref2 protein_coding protein_coding MGP_CASTEiJ_T0011736.1 MGP_CASTEiJ_G0009899.1 mouse_genomes_project 1 59726363 59727428 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023290.1 MGP_CASTEiJ_G0016238.1 mouse_genomes_project 1 186925860 186980618 - MGP_CASTEiJ_P0023290 Capn2 protein_coding protein_coding MGP_CASTEiJ_T0023291.1 MGP_CASTEiJ_G0016238.1 mouse_genomes_project 1 186926605 186980483 - MGP_CASTEiJ_P0023291 Capn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023292.1 MGP_CASTEiJ_G0016238.1 mouse_genomes_project 1 186928815 186938454 - Capn2 protein_coding retained_intron MGP_CASTEiJ_T0023293.1 MGP_CASTEiJ_G0016238.1 mouse_genomes_project 1 186931165 186940136 - Capn2 protein_coding retained_intron MGP_CASTEiJ_T0023294.1 MGP_CASTEiJ_G0016238.1 mouse_genomes_project 1 186942512 186951170 - Capn2 protein_coding retained_intron MGP_CASTEiJ_T0023295.1 MGP_CASTEiJ_G0016238.1 mouse_genomes_project 1 186942517 186980702 - Capn2 protein_coding retained_intron MGP_CASTEiJ_T0021190.1 MGP_CASTEiJ_G0015785.1 mouse_genomes_project 1 131994865 132024078 - MGP_CASTEiJ_P0021190 C4bp protein_coding protein_coding MGP_CASTEiJ_T0021191.1 MGP_CASTEiJ_G0015785.1 mouse_genomes_project 1 131996304 132024096 - MGP_CASTEiJ_P0021191 C4bp protein_coding unknown_likely_coding MGP_CASTEiJ_T0021192.1 MGP_CASTEiJ_G0015785.1 mouse_genomes_project 1 131996913 132009524 - MGP_CASTEiJ_P0021192 C4bp protein_coding protein_coding MGP_CASTEiJ_T0021193.1 MGP_CASTEiJ_G0015785.1 mouse_genomes_project 1 132003129 132024056 - MGP_CASTEiJ_P0021193 C4bp protein_coding protein_coding MGP_CASTEiJ_T0021194.1 MGP_CASTEiJ_G0015785.1 mouse_genomes_project 1 132020224 132024070 - C4bp protein_coding retained_intron MGP_CASTEiJ_T0009226.1 MGP_CASTEiJ_G0007414.1 mouse_genomes_project 1 18234120 18234193 + Mir206 miRNA miRNA MGP_CASTEiJ_T0011792.1 MGP_CASTEiJ_G0009955.1 mouse_genomes_project 1 82729894 82730077 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019080.1 MGP_CASTEiJ_G0015369.1 mouse_genomes_project 1 52036143 52040997 + Ormdl1 protein_coding retained_intron MGP_CASTEiJ_T0019081.1 MGP_CASTEiJ_G0015369.1 mouse_genomes_project 1 52036143 52049623 + MGP_CASTEiJ_P0019081 Ormdl1 protein_coding protein_coding MGP_CASTEiJ_T0019655.1 MGP_CASTEiJ_G0015478.1 mouse_genomes_project 1 70683862 70858885 - MGP_CASTEiJ_P0019655 Abca12 protein_coding protein_coding MGP_CASTEiJ_T0019656.1 MGP_CASTEiJ_G0015478.1 mouse_genomes_project 1 70728250 70745239 - Abca12 protein_coding retained_intron MGP_CASTEiJ_T0019657.1 MGP_CASTEiJ_G0015478.1 mouse_genomes_project 1 70749917 70858885 - Abca12 protein_coding retained_intron MGP_CASTEiJ_T0019658.1 MGP_CASTEiJ_G0015478.1 mouse_genomes_project 1 70772337 70775503 - Abca12 protein_coding retained_intron MGP_CASTEiJ_T0019659.1 MGP_CASTEiJ_G0015478.1 mouse_genomes_project 1 70803816 70858871 - Abca12 protein_coding retained_intron MGP_CASTEiJ_T0002721.1 MGP_CASTEiJ_G0002590.1 mouse_genomes_project 1 65547170 65554463 - Gm10558 antisense antisense MGP_CASTEiJ_T0000514.1 MGP_CASTEiJ_G0000460.1 mouse_genomes_project 1 86786138 86789060 + TEC TEC MGP_CASTEiJ_T0018955.1 MGP_CASTEiJ_G0015348.1 mouse_genomes_project 1 44525998 44526617 + MGP_CASTEiJ_P0018955 protein_coding protein_coding MGP_CASTEiJ_T0011941.1 MGP_CASTEiJ_G0010104.1 mouse_genomes_project 1 153678743 153679671 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020717.1 MGP_CASTEiJ_G0015688.1 mouse_genomes_project 1 93813387 93822039 - Pask protein_coding retained_intron MGP_CASTEiJ_T0020718.1 MGP_CASTEiJ_G0015688.1 mouse_genomes_project 1 93813395 93849837 - MGP_CASTEiJ_P0020718 Pask protein_coding protein_coding MGP_CASTEiJ_T0020719.1 MGP_CASTEiJ_G0015688.1 mouse_genomes_project 1 93814455 93817770 - Pask protein_coding retained_intron MGP_CASTEiJ_T0020720.1 MGP_CASTEiJ_G0015688.1 mouse_genomes_project 1 93814702 93815964 - Pask protein_coding retained_intron MGP_CASTEiJ_T0020721.1 MGP_CASTEiJ_G0015688.1 mouse_genomes_project 1 93822453 93850515 - Pask protein_coding retained_intron MGP_CASTEiJ_T0020722.1 MGP_CASTEiJ_G0015688.1 mouse_genomes_project 1 93843487 93850532 - MGP_CASTEiJ_P0020722 Pask protein_coding protein_coding MGP_CASTEiJ_T0099107.1 MGP_CASTEiJ_G0036020.1 mouse_genomes_project 1 118521225 118521389 + Gm24030 snRNA snRNA MGP_CASTEiJ_T0100296.1 MGP_CASTEiJ_G0037209.1 mouse_genomes_project 1 100773094 100773228 - Gm23602 snoRNA snoRNA MGP_CASTEiJ_T0022248.1 MGP_CASTEiJ_G0015992.1 mouse_genomes_project 1 164165400 164196853 - MGP_CASTEiJ_P0022248 Zbtb37 protein_coding protein_coding MGP_CASTEiJ_T0022249.1 MGP_CASTEiJ_G0015992.1 mouse_genomes_project 1 164171294 164196853 - MGP_CASTEiJ_P0022249 Zbtb37 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022250.1 MGP_CASTEiJ_G0015992.1 mouse_genomes_project 1 164171300 164196838 - MGP_CASTEiJ_P0022250 Zbtb37 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022251.1 MGP_CASTEiJ_G0015992.1 mouse_genomes_project 1 164180245 164196263 - MGP_CASTEiJ_P0022251 Zbtb37 protein_coding protein_coding MGP_CASTEiJ_T0022252.1 MGP_CASTEiJ_G0015992.1 mouse_genomes_project 1 164181747 164196852 - MGP_CASTEiJ_P0022252 Zbtb37 protein_coding protein_coding MGP_CASTEiJ_T0022253.1 MGP_CASTEiJ_G0015992.1 mouse_genomes_project 1 164181911 164196288 - MGP_CASTEiJ_P0022253 Zbtb37 protein_coding protein_coding MGP_CASTEiJ_T0022254.1 MGP_CASTEiJ_G0015992.1 mouse_genomes_project 1 164194441 164196820 - MGP_CASTEiJ_P0022254 Zbtb37 protein_coding protein_coding MGP_CASTEiJ_T0000382.1 MGP_CASTEiJ_G0000329.1 mouse_genomes_project 1 23463954 23466592 - TEC TEC MGP_CASTEiJ_T0018630.1 MGP_CASTEiJ_G0015284.1 mouse_genomes_project 1 34942302 34964982 + MGP_CASTEiJ_P0018630 Zap70 protein_coding protein_coding MGP_CASTEiJ_T0018631.1 MGP_CASTEiJ_G0015284.1 mouse_genomes_project 1 34947357 34951530 + MGP_CASTEiJ_P0018631 Zap70 protein_coding protein_coding MGP_CASTEiJ_T0018632.1 MGP_CASTEiJ_G0015284.1 mouse_genomes_project 1 34951454 34952832 + Zap70 protein_coding retained_intron MGP_CASTEiJ_T0018633.1 MGP_CASTEiJ_G0015284.1 mouse_genomes_project 1 34959464 34964979 + Zap70 protein_coding retained_intron MGP_CASTEiJ_T0099127.1 MGP_CASTEiJ_G0036040.1 mouse_genomes_project 1 152216391 152216497 - Gm23535 snRNA snRNA MGP_CASTEiJ_T0021519.1 MGP_CASTEiJ_G0015860.1 mouse_genomes_project 1 136153757 136237652 + MGP_CASTEiJ_P0021519 Kdm5b protein_coding protein_coding MGP_CASTEiJ_T0021520.1 MGP_CASTEiJ_G0015860.1 mouse_genomes_project 1 136153765 136233193 + MGP_CASTEiJ_P0021520 Kdm5b protein_coding unknown_likely_coding MGP_CASTEiJ_T0021521.1 MGP_CASTEiJ_G0015860.1 mouse_genomes_project 1 136153778 136233905 + MGP_CASTEiJ_P0021521 Kdm5b protein_coding protein_coding MGP_CASTEiJ_T0021522.1 MGP_CASTEiJ_G0015860.1 mouse_genomes_project 1 136153793 136209133 + Kdm5b protein_coding retained_intron MGP_CASTEiJ_T0021523.1 MGP_CASTEiJ_G0015860.1 mouse_genomes_project 1 136153880 136233824 + MGP_CASTEiJ_P0021523 Kdm5b protein_coding unknown_likely_coding MGP_CASTEiJ_T0021524.1 MGP_CASTEiJ_G0015860.1 mouse_genomes_project 1 136190421 136193136 + Kdm5b protein_coding retained_intron MGP_CASTEiJ_T0021525.1 MGP_CASTEiJ_G0015860.1 mouse_genomes_project 1 136224214 136227436 + Kdm5b protein_coding retained_intron MGP_CASTEiJ_T0021526.1 MGP_CASTEiJ_G0015860.1 mouse_genomes_project 1 136225133 136229535 + Kdm5b protein_coding retained_intron MGP_CASTEiJ_T0022399.1 MGP_CASTEiJ_G0016021.1 mouse_genomes_project 1 167192379 167246975 - MGP_CASTEiJ_P0022399 BC055324 protein_coding protein_coding MGP_CASTEiJ_T0022401.1 MGP_CASTEiJ_G0016021.1 mouse_genomes_project 1 167201478 167246975 - MGP_CASTEiJ_P0022401 BC055324 protein_coding protein_coding MGP_CASTEiJ_T0022402.1 MGP_CASTEiJ_G0016021.1 mouse_genomes_project 1 167201999 167210944 - MGP_CASTEiJ_P0022402 BC055324 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022403.1 MGP_CASTEiJ_G0016021.1 mouse_genomes_project 1 167217238 167222467 - BC055324 protein_coding retained_intron MGP_CASTEiJ_T0022404.1 MGP_CASTEiJ_G0016021.1 mouse_genomes_project 1 167237261 167246943 - MGP_CASTEiJ_P0022404 BC055324 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022405.1 MGP_CASTEiJ_G0016021.1 mouse_genomes_project 1 167241893 167246720 - BC055324 protein_coding processed_transcript MGP_CASTEiJ_T0101945.1 MGP_CASTEiJ_G0038670.1 mouse_genomes_project 1 177524401 177527272 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0098798.1 MGP_CASTEiJ_G0035728.1 mouse_genomes_project 1 140864097 140866901 + sense_intronic sense_intronic MGP_CASTEiJ_T0012026.1 MGP_CASTEiJ_G0010189.1 mouse_genomes_project 1 195961687 195962113 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019547.1 MGP_CASTEiJ_G0015460.1 mouse_genomes_project 1 64307400 64325788 - MGP_CASTEiJ_P0019547 protein_coding protein_coding MGP_CASTEiJ_T0019548.1 MGP_CASTEiJ_G0015460.1 mouse_genomes_project 1 64309431 64325767 - MGP_CASTEiJ_P0019548 protein_coding protein_coding MGP_CASTEiJ_T0019549.1 MGP_CASTEiJ_G0015460.1 mouse_genomes_project 1 64311079 64325687 - MGP_CASTEiJ_P0019549 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009314.1 MGP_CASTEiJ_G0007502.1 mouse_genomes_project 1 184908687 184908754 + Mir6904 miRNA miRNA MGP_CASTEiJ_T0019337.1 MGP_CASTEiJ_G0015419.1 mouse_genomes_project 1 58441338 58569937 + MGP_CASTEiJ_P0019337 Gm973 protein_coding protein_coding MGP_CASTEiJ_T0019338.1 MGP_CASTEiJ_G0015419.1 mouse_genomes_project 1 58448959 58451644 + MGP_CASTEiJ_P0019338 Gm973 protein_coding protein_coding MGP_CASTEiJ_T0019339.1 MGP_CASTEiJ_G0015419.1 mouse_genomes_project 1 58449323 58529853 + MGP_CASTEiJ_P0019339 Gm973 protein_coding unknown_likely_coding MGP_CASTEiJ_T0019340.1 MGP_CASTEiJ_G0015419.1 mouse_genomes_project 1 58470163 58483661 + Gm973 protein_coding retained_intron MGP_CASTEiJ_T0019341.1 MGP_CASTEiJ_G0015419.1 mouse_genomes_project 1 58476251 58488164 + Gm973 protein_coding processed_transcript MGP_CASTEiJ_T0019342.1 MGP_CASTEiJ_G0015419.1 mouse_genomes_project 1 58485378 58492011 + Gm973 protein_coding retained_intron MGP_CASTEiJ_T0019344.1 MGP_CASTEiJ_G0015419.1 mouse_genomes_project 1 58540560 58563600 + Gm973 protein_coding processed_transcript MGP_CASTEiJ_T0019345.1 MGP_CASTEiJ_G0015419.1 mouse_genomes_project 1 58540593 58565641 + Gm973 protein_coding processed_transcript MGP_CASTEiJ_T0019346.1 MGP_CASTEiJ_G0015419.1 mouse_genomes_project 1 58553214 58563582 + Gm973 protein_coding processed_transcript MGP_CASTEiJ_T0019347.1 MGP_CASTEiJ_G0015419.1 mouse_genomes_project 1 58565660 58571844 + MGP_CASTEiJ_P0019347 Gm973 protein_coding protein_coding MGP_CASTEiJ_T0020440.1 MGP_CASTEiJ_G0015621.1 mouse_genomes_project 1 87847832 87879577 + Sag protein_coding retained_intron MGP_CASTEiJ_T0020441.1 MGP_CASTEiJ_G0015621.1 mouse_genomes_project 1 87847832 87870172 + Sag protein_coding retained_intron MGP_CASTEiJ_T0020442.1 MGP_CASTEiJ_G0015621.1 mouse_genomes_project 1 87847832 87879092 + Sag protein_coding retained_intron MGP_CASTEiJ_T0020443.1 MGP_CASTEiJ_G0015621.1 mouse_genomes_project 1 87847832 87863426 + Sag protein_coding retained_intron MGP_CASTEiJ_T0020444.1 MGP_CASTEiJ_G0015621.1 mouse_genomes_project 1 87847832 87890253 + MGP_CASTEiJ_P0020444 Sag protein_coding protein_coding MGP_CASTEiJ_T0020445.1 MGP_CASTEiJ_G0015621.1 mouse_genomes_project 1 87847832 87890388 + MGP_CASTEiJ_P0020445 Sag protein_coding protein_coding MGP_CASTEiJ_T0020446.1 MGP_CASTEiJ_G0015621.1 mouse_genomes_project 1 87857680 87869541 + Sag protein_coding processed_transcript MGP_CASTEiJ_T0020447.1 MGP_CASTEiJ_G0015621.1 mouse_genomes_project 1 87871361 87879595 + Sag protein_coding retained_intron MGP_CASTEiJ_T0011567.1 MGP_CASTEiJ_G0009730.1 mouse_genomes_project 1 4469399 4469788 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005895.1 MGP_CASTEiJ_G0004948.1 mouse_genomes_project 1 196486485 196489492 - Gm37432 lincRNA lincRNA MGP_CASTEiJ_T0098425.1 MGP_CASTEiJ_G0035356.1 mouse_genomes_project 1 73363267 73363393 + Gm25329 rRNA rRNA MGP_CASTEiJ_T0020517.1 MGP_CASTEiJ_G0015646.1 mouse_genomes_project 1 90970302 90979082 + MGP_CASTEiJ_P0020517 Cops8 protein_coding protein_coding MGP_CASTEiJ_T0020518.1 MGP_CASTEiJ_G0015646.1 mouse_genomes_project 1 90970328 90979952 + Cops8 protein_coding retained_intron MGP_CASTEiJ_T0020519.1 MGP_CASTEiJ_G0015646.1 mouse_genomes_project 1 90970330 90978297 + Cops8 protein_coding retained_intron MGP_CASTEiJ_T0020520.1 MGP_CASTEiJ_G0015646.1 mouse_genomes_project 1 90970351 90972505 + Cops8 protein_coding retained_intron MGP_CASTEiJ_T0020521.1 MGP_CASTEiJ_G0015646.1 mouse_genomes_project 1 90970351 90977868 + Cops8 protein_coding processed_transcript MGP_CASTEiJ_T0020522.1 MGP_CASTEiJ_G0015646.1 mouse_genomes_project 1 90970380 90979009 + MGP_CASTEiJ_P0020522 Cops8 protein_coding protein_coding MGP_CASTEiJ_T0020523.1 MGP_CASTEiJ_G0015646.1 mouse_genomes_project 1 90976495 90978159 + Cops8 protein_coding retained_intron MGP_CASTEiJ_T0020524.1 MGP_CASTEiJ_G0015646.1 mouse_genomes_project 1 90978176 90979222 + Cops8 protein_coding retained_intron MGP_CASTEiJ_T0017988.1 MGP_CASTEiJ_G0015158.1 mouse_genomes_project 1 407272 420230 - Xkr4 protein_coding processed_transcript MGP_CASTEiJ_T0017989.1 MGP_CASTEiJ_G0015158.1 mouse_genomes_project 1 407895 419518 - Xkr4 protein_coding processed_transcript MGP_CASTEiJ_T0017990.1 MGP_CASTEiJ_G0015158.1 mouse_genomes_project 1 418367 879041 - MGP_CASTEiJ_P0017990 Xkr4 protein_coding protein_coding MGP_CASTEiJ_T0005635.1 MGP_CASTEiJ_G0004738.1 mouse_genomes_project 1 73122348 73130959 + Gm29186 lincRNA lincRNA MGP_CASTEiJ_T0011840.1 MGP_CASTEiJ_G0010003.1 mouse_genomes_project 1 106127787 106128062 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011819.1 MGP_CASTEiJ_G0009982.1 mouse_genomes_project 1 95815727 95816551 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100256.1 MGP_CASTEiJ_G0037169.1 mouse_genomes_project 1 17070371 17070436 - Gm24633 snoRNA snoRNA MGP_CASTEiJ_T0005703.1 MGP_CASTEiJ_G0004797.1 mouse_genomes_project 1 108070262 108072488 - Gm15391 lincRNA lincRNA MGP_CASTEiJ_T0002658.1 MGP_CASTEiJ_G0002542.1 mouse_genomes_project 1 13698696 13704755 + Gm7568 antisense antisense MGP_CASTEiJ_T0002659.1 MGP_CASTEiJ_G0002542.1 mouse_genomes_project 1 13698696 13715361 + Gm7568 antisense antisense MGP_CASTEiJ_T0002660.1 MGP_CASTEiJ_G0002542.1 mouse_genomes_project 1 13698733 13704751 + Gm7568 antisense antisense MGP_CASTEiJ_T0020470.1 MGP_CASTEiJ_G0015627.1 mouse_genomes_project 1 88168457 88339179 + MGP_CASTEiJ_P0020470 Ugt1a8 protein_coding protein_coding MGP_CASTEiJ_T0018786.1 MGP_CASTEiJ_G0015314.1 mouse_genomes_project 1 38146591 38147775 - MGP_CASTEiJ_P0018786 Gm3646 protein_coding protein_coding MGP_CASTEiJ_T0101947.1 MGP_CASTEiJ_G0038672.1 mouse_genomes_project 1 177860649 177878271 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0009271.1 MGP_CASTEiJ_G0007459.1 mouse_genomes_project 1 86611611 86611668 - Gm22955 miRNA miRNA MGP_CASTEiJ_T0019813.1 MGP_CASTEiJ_G0015509.1 mouse_genomes_project 1 74241458 74245278 + MGP_CASTEiJ_P0019813 Bcs1l protein_coding protein_coding MGP_CASTEiJ_T0019814.1 MGP_CASTEiJ_G0015509.1 mouse_genomes_project 1 74241469 74245600 + MGP_CASTEiJ_P0019814 Bcs1l protein_coding protein_coding MGP_CASTEiJ_T0019815.1 MGP_CASTEiJ_G0015509.1 mouse_genomes_project 1 74241543 74245343 + MGP_CASTEiJ_P0019815 Bcs1l protein_coding protein_coding MGP_CASTEiJ_T0019816.1 MGP_CASTEiJ_G0015509.1 mouse_genomes_project 1 74243423 74244066 + Bcs1l protein_coding retained_intron MGP_CASTEiJ_T0023089.1 MGP_CASTEiJ_G0016200.1 mouse_genomes_project 1 183164335 183757076 - MGP_CASTEiJ_P0023089 Smyd3 protein_coding protein_coding MGP_CASTEiJ_T0023090.1 MGP_CASTEiJ_G0016200.1 mouse_genomes_project 1 183167422 183484914 - Smyd3 protein_coding processed_transcript MGP_CASTEiJ_T0023091.1 MGP_CASTEiJ_G0016200.1 mouse_genomes_project 1 183167527 183611015 - Smyd3 protein_coding processed_transcript MGP_CASTEiJ_T0023092.1 MGP_CASTEiJ_G0016200.1 mouse_genomes_project 1 183169624 183203167 - Smyd3 protein_coding processed_transcript MGP_CASTEiJ_T0023093.1 MGP_CASTEiJ_G0016200.1 mouse_genomes_project 1 183614964 183644531 - Smyd3 protein_coding processed_transcript MGP_CASTEiJ_T0023094.1 MGP_CASTEiJ_G0016200.1 mouse_genomes_project 1 183631211 183757083 - MGP_CASTEiJ_P0023094 Smyd3 protein_coding protein_coding MGP_CASTEiJ_T0023095.1 MGP_CASTEiJ_G0016200.1 mouse_genomes_project 1 183746133 183757047 - MGP_CASTEiJ_P0023095 Smyd3 protein_coding protein_coding MGP_CASTEiJ_T0016288.1 MGP_CASTEiJ_G0014423.1 mouse_genomes_project 1 98517936 98523151 - B230216N24Rik processed_transcript retained_intron MGP_CASTEiJ_T0016289.1 MGP_CASTEiJ_G0014423.1 mouse_genomes_project 1 98517947 98537100 - B230216N24Rik processed_transcript sense_intronic MGP_CASTEiJ_T0016290.1 MGP_CASTEiJ_G0014423.1 mouse_genomes_project 1 98519218 98537134 - B230216N24Rik processed_transcript sense_intronic MGP_CASTEiJ_T0016291.1 MGP_CASTEiJ_G0014423.1 mouse_genomes_project 1 98519369 98546857 - B230216N24Rik processed_transcript sense_intronic MGP_CASTEiJ_T0016292.1 MGP_CASTEiJ_G0014423.1 mouse_genomes_project 1 98535152 98537095 - B230216N24Rik processed_transcript retained_intron MGP_CASTEiJ_T0011937.1 MGP_CASTEiJ_G0010100.1 mouse_genomes_project 1 151689839 151691376 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022809.1 MGP_CASTEiJ_G0016115.1 mouse_genomes_project 1 175413691 175450833 + MGP_CASTEiJ_P0022809 Slamf1 protein_coding protein_coding MGP_CASTEiJ_T0022810.1 MGP_CASTEiJ_G0016115.1 mouse_genomes_project 1 175413719 175445456 + Slamf1 protein_coding retained_intron MGP_CASTEiJ_T0011809.1 MGP_CASTEiJ_G0009972.1 mouse_genomes_project 1 89560839 89561888 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000528.1 MGP_CASTEiJ_G0000474.1 mouse_genomes_project 1 90884289 90887110 + TEC TEC MGP_CASTEiJ_T0005886.1 MGP_CASTEiJ_G0004940.1 mouse_genomes_project 1 195317786 195331362 + Gm29678 lincRNA lincRNA MGP_CASTEiJ_T0020784.1 MGP_CASTEiJ_G0015698.1 mouse_genomes_project 1 94324851 94334197 - MGP_CASTEiJ_P0020784 Dtymk protein_coding protein_coding MGP_CASTEiJ_T0020785.1 MGP_CASTEiJ_G0015698.1 mouse_genomes_project 1 94324999 94331276 - MGP_CASTEiJ_P0020785 Dtymk protein_coding protein_coding MGP_CASTEiJ_T0020786.1 MGP_CASTEiJ_G0015698.1 mouse_genomes_project 1 94330654 94331636 - Dtymk protein_coding processed_transcript MGP_CASTEiJ_T0020787.1 MGP_CASTEiJ_G0015698.1 mouse_genomes_project 1 94332335 94334169 - MGP_CASTEiJ_P0020787 Dtymk protein_coding protein_coding MGP_CASTEiJ_T0011764.1 MGP_CASTEiJ_G0009927.1 mouse_genomes_project 1 65256745 65257083 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021808.1 MGP_CASTEiJ_G0015916.1 mouse_genomes_project 1 147108687 147137009 - MGP_CASTEiJ_P0021808 Rgs18 protein_coding protein_coding MGP_CASTEiJ_T0011581.1 MGP_CASTEiJ_G0009744.1 mouse_genomes_project 1 6830834 6831768 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023500.1 MGP_CASTEiJ_G0016280.1 mouse_genomes_project 1 195997324 196003582 + MGP_CASTEiJ_P0023500 Spata45 protein_coding protein_coding MGP_CASTEiJ_T0023501.1 MGP_CASTEiJ_G0016280.1 mouse_genomes_project 1 195997504 196003589 + MGP_CASTEiJ_P0023501 Spata45 protein_coding protein_coding MGP_CASTEiJ_T0011791.1 MGP_CASTEiJ_G0009954.1 mouse_genomes_project 1 81706723 81707429 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012006.1 MGP_CASTEiJ_G0010169.1 mouse_genomes_project 1 185048609 185049087 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019282.1 MGP_CASTEiJ_G0015407.1 mouse_genomes_project 1 57455110 57464380 + MGP_CASTEiJ_P0019282 Ndufb3 protein_coding protein_coding MGP_CASTEiJ_T0020486.1 MGP_CASTEiJ_G0015636.1 mouse_genomes_project 1 88482624 88625720 + MGP_CASTEiJ_P0020486 Trpm8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020487.1 MGP_CASTEiJ_G0015636.1 mouse_genomes_project 1 88536483 88634783 + MGP_CASTEiJ_P0020487 Trpm8 protein_coding protein_coding MGP_CASTEiJ_T0020488.1 MGP_CASTEiJ_G0015636.1 mouse_genomes_project 1 88539953 88635225 + MGP_CASTEiJ_P0020488 Trpm8 protein_coding protein_coding MGP_CASTEiJ_T0020489.1 MGP_CASTEiJ_G0015636.1 mouse_genomes_project 1 88564208 88634783 + MGP_CASTEiJ_P0020489 Trpm8 protein_coding protein_coding MGP_CASTEiJ_T0000600.1 MGP_CASTEiJ_G0000545.1 mouse_genomes_project 1 135373307 135375009 + TEC TEC MGP_CASTEiJ_T0019539.1 MGP_CASTEiJ_G0015454.1 mouse_genomes_project 1 64246092 64248768 - MGP_CASTEiJ_P0019539 Cryge protein_coding protein_coding MGP_CASTEiJ_T0005662.1 MGP_CASTEiJ_G0004760.1 mouse_genomes_project 1 88695347 88717249 - Gm29538 lincRNA lincRNA MGP_CASTEiJ_T0022980.1 MGP_CASTEiJ_G0016175.1 mouse_genomes_project 1 178381921 178391156 + MGP_CASTEiJ_P0022980 Olfr220 protein_coding protein_coding MGP_CASTEiJ_T0022981.1 MGP_CASTEiJ_G0016175.1 mouse_genomes_project 1 178390178 178391156 + MGP_CASTEiJ_P0022981 Olfr220 protein_coding protein_coding MGP_CASTEiJ_T0011906.1 MGP_CASTEiJ_G0010069.1 mouse_genomes_project 1 135590418 135591356 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002877.1 MGP_CASTEiJ_G0002711.1 mouse_genomes_project 1 192355949 192391125 - Gm36388 antisense antisense MGP_CASTEiJ_T0000537.1 MGP_CASTEiJ_G0000483.1 mouse_genomes_project 1 96334327 96336405 + TEC TEC MGP_CASTEiJ_T0012014.1 MGP_CASTEiJ_G0010177.1 mouse_genomes_project 1 186848584 186849569 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000543.1 MGP_CASTEiJ_G0000489.1 mouse_genomes_project 1 105317759 105321534 + TEC TEC MGP_CASTEiJ_T0020350.1 MGP_CASTEiJ_G0015605.1 mouse_genomes_project 1 87092810 87096024 - MGP_CASTEiJ_P0020350 Alppl2 protein_coding protein_coding MGP_CASTEiJ_T0020351.1 MGP_CASTEiJ_G0015605.1 mouse_genomes_project 1 87092811 87096041 - MGP_CASTEiJ_P0020351 Alppl2 protein_coding protein_coding MGP_CASTEiJ_T0020352.1 MGP_CASTEiJ_G0015605.1 mouse_genomes_project 1 87094892 87095918 - Alppl2 protein_coding retained_intron MGP_CASTEiJ_T0005509.1 MGP_CASTEiJ_G0004646.1 mouse_genomes_project 1 16802483 16803543 + Gm28340 lincRNA lincRNA MGP_CASTEiJ_T0019836.1 MGP_CASTEiJ_G0015512.1 mouse_genomes_project 1 74310940 74353684 + MGP_CASTEiJ_P0019836 Ttll4 protein_coding protein_coding MGP_CASTEiJ_T0019837.1 MGP_CASTEiJ_G0015512.1 mouse_genomes_project 1 74310945 74335324 + MGP_CASTEiJ_P0019837 Ttll4 protein_coding protein_coding MGP_CASTEiJ_T0019838.1 MGP_CASTEiJ_G0015512.1 mouse_genomes_project 1 74311012 74322478 + Ttll4 protein_coding retained_intron MGP_CASTEiJ_T0019839.1 MGP_CASTEiJ_G0015512.1 mouse_genomes_project 1 74311012 74332022 + MGP_CASTEiJ_P0019839 Ttll4 protein_coding protein_coding MGP_CASTEiJ_T0019840.1 MGP_CASTEiJ_G0015512.1 mouse_genomes_project 1 74329117 74347935 + MGP_CASTEiJ_P0019840 Ttll4 protein_coding protein_coding MGP_CASTEiJ_T0019841.1 MGP_CASTEiJ_G0015512.1 mouse_genomes_project 1 74335292 74338595 + Ttll4 protein_coding processed_transcript MGP_CASTEiJ_T0019842.1 MGP_CASTEiJ_G0015512.1 mouse_genomes_project 1 74335921 74338617 + Ttll4 protein_coding processed_transcript MGP_CASTEiJ_T0019843.1 MGP_CASTEiJ_G0015512.1 mouse_genomes_project 1 74339389 74340652 + Ttll4 protein_coding retained_intron MGP_CASTEiJ_T0019844.1 MGP_CASTEiJ_G0015512.1 mouse_genomes_project 1 74340046 74351788 + Ttll4 protein_coding processed_transcript MGP_CASTEiJ_T0019845.1 MGP_CASTEiJ_G0015512.1 mouse_genomes_project 1 74345170 74349835 + Ttll4 protein_coding retained_intron MGP_CASTEiJ_T0019846.1 MGP_CASTEiJ_G0015512.1 mouse_genomes_project 1 74345691 74347799 + Ttll4 protein_coding processed_transcript MGP_CASTEiJ_T0019916.1 MGP_CASTEiJ_G0015529.1 mouse_genomes_project 1 74811777 74816039 + Ankzf1 protein_coding retained_intron MGP_CASTEiJ_T0019917.1 MGP_CASTEiJ_G0015529.1 mouse_genomes_project 1 74811786 74820337 + Ankzf1 protein_coding retained_intron MGP_CASTEiJ_T0019918.1 MGP_CASTEiJ_G0015529.1 mouse_genomes_project 1 74811786 74820337 + Ankzf1 protein_coding retained_intron MGP_CASTEiJ_T0019919.1 MGP_CASTEiJ_G0015529.1 mouse_genomes_project 1 74811786 74816481 + Ankzf1 protein_coding retained_intron MGP_CASTEiJ_T0019920.1 MGP_CASTEiJ_G0015529.1 mouse_genomes_project 1 74811786 74820337 + MGP_CASTEiJ_P0019920 Ankzf1 protein_coding protein_coding MGP_CASTEiJ_T0019921.1 MGP_CASTEiJ_G0015529.1 mouse_genomes_project 1 74811786 74820337 + MGP_CASTEiJ_P0019921 Ankzf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019922.1 MGP_CASTEiJ_G0015529.1 mouse_genomes_project 1 74811818 74816481 + MGP_CASTEiJ_P0019922 Ankzf1 protein_coding protein_coding MGP_CASTEiJ_T0019923.1 MGP_CASTEiJ_G0015529.1 mouse_genomes_project 1 74816639 74817602 + Ankzf1 protein_coding retained_intron MGP_CASTEiJ_T0005769.1 MGP_CASTEiJ_G0004850.1 mouse_genomes_project 1 141288870 141313336 + 4933436E23Rik lincRNA lincRNA MGP_CASTEiJ_T0018235.1 MGP_CASTEiJ_G0015198.1 mouse_genomes_project 1 12175296 12177942 - MGP_CASTEiJ_P0018235 Msc protein_coding protein_coding MGP_CASTEiJ_T0018236.1 MGP_CASTEiJ_G0015198.1 mouse_genomes_project 1 12175696 12177299 - MGP_CASTEiJ_P0018236 Msc protein_coding protein_coding MGP_CASTEiJ_T0018237.1 MGP_CASTEiJ_G0015198.1 mouse_genomes_project 1 12175885 12176599 - Msc protein_coding retained_intron MGP_CASTEiJ_T0018238.1 MGP_CASTEiJ_G0015198.1 mouse_genomes_project 1 12176700 12177944 - Msc protein_coding retained_intron MGP_CASTEiJ_T0002805.1 MGP_CASTEiJ_G0002652.1 mouse_genomes_project 1 149243265 149285622 - Gm15584 antisense antisense MGP_CASTEiJ_T0023317.1 MGP_CASTEiJ_G0016245.1 mouse_genomes_project 1 187770180 187791076 - MGP_CASTEiJ_P0023317 Brox protein_coding protein_coding MGP_CASTEiJ_T0023318.1 MGP_CASTEiJ_G0016245.1 mouse_genomes_project 1 187770182 187791340 - MGP_CASTEiJ_P0023318 Brox protein_coding protein_coding MGP_CASTEiJ_T0023319.1 MGP_CASTEiJ_G0016245.1 mouse_genomes_project 1 187770907 187791353 - MGP_CASTEiJ_P0023319 Brox protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023320.1 MGP_CASTEiJ_G0016245.1 mouse_genomes_project 1 187777675 187780085 - Brox protein_coding retained_intron MGP_CASTEiJ_T0023321.1 MGP_CASTEiJ_G0016245.1 mouse_genomes_project 1 187780028 187786749 - Brox protein_coding retained_intron MGP_CASTEiJ_T0023322.1 MGP_CASTEiJ_G0016245.1 mouse_genomes_project 1 187780083 187791312 - MGP_CASTEiJ_P0023322 Brox protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023323.1 MGP_CASTEiJ_G0016245.1 mouse_genomes_project 1 187781646 187786316 - Brox protein_coding retained_intron MGP_CASTEiJ_T0023324.1 MGP_CASTEiJ_G0016245.1 mouse_genomes_project 1 187784777 187791340 - Brox protein_coding processed_transcript MGP_CASTEiJ_T0023325.1 MGP_CASTEiJ_G0016245.1 mouse_genomes_project 1 187785873 187789960 - MGP_CASTEiJ_P0023325 Brox protein_coding protein_coding MGP_CASTEiJ_T0023533.1 MGP_CASTEiJ_G0016289.1 mouse_genomes_project 1 196532190 196572895 - MGP_CASTEiJ_P0023533 Dtl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023534.1 MGP_CASTEiJ_G0016289.1 mouse_genomes_project 1 196532199 196572918 - MGP_CASTEiJ_P0023534 Dtl protein_coding protein_coding MGP_CASTEiJ_T0023535.1 MGP_CASTEiJ_G0016289.1 mouse_genomes_project 1 196533928 196572888 - Dtl protein_coding processed_transcript MGP_CASTEiJ_T0023536.1 MGP_CASTEiJ_G0016289.1 mouse_genomes_project 1 196547184 196572887 - MGP_CASTEiJ_P0023536 Dtl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023537.1 MGP_CASTEiJ_G0016289.1 mouse_genomes_project 1 196556740 196572885 - Dtl protein_coding retained_intron MGP_CASTEiJ_T0023538.1 MGP_CASTEiJ_G0016289.1 mouse_genomes_project 1 196568179 196572887 - Dtl protein_coding retained_intron MGP_CASTEiJ_T0101933.1 MGP_CASTEiJ_G0038658.1 mouse_genomes_project 1 132033593 132047322 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0005597.1 MGP_CASTEiJ_G0004711.1 mouse_genomes_project 1 60431995 60453496 + 9530026F06Rik lincRNA lincRNA MGP_CASTEiJ_T0019114.1 MGP_CASTEiJ_G0015378.1 mouse_genomes_project 1 53192306 53284239 - MGP_CASTEiJ_P0019114 Pgap1 protein_coding protein_coding MGP_CASTEiJ_T0019115.1 MGP_CASTEiJ_G0015378.1 mouse_genomes_project 1 53246643 53284241 - Pgap1 protein_coding retained_intron MGP_CASTEiJ_T0019116.1 MGP_CASTEiJ_G0015378.1 mouse_genomes_project 1 53249748 53252977 - Pgap1 protein_coding retained_intron MGP_CASTEiJ_T0019117.1 MGP_CASTEiJ_G0015378.1 mouse_genomes_project 1 53281162 53284184 - Pgap1 protein_coding retained_intron MGP_CASTEiJ_T0099074.1 MGP_CASTEiJ_G0035987.1 mouse_genomes_project 1 29631469 29631576 - Gm23032 snRNA snRNA MGP_CASTEiJ_T0022628.1 MGP_CASTEiJ_G0016075.1 mouse_genomes_project 1 173760058 173784228 - Nos1ap protein_coding processed_transcript MGP_CASTEiJ_T0022630.1 MGP_CASTEiJ_G0016075.1 mouse_genomes_project 1 173772009 174073143 - MGP_CASTEiJ_P0022630 Nos1ap protein_coding unknown_likely_coding MGP_CASTEiJ_T0022631.1 MGP_CASTEiJ_G0016075.1 mouse_genomes_project 1 173774020 174073610 - MGP_CASTEiJ_P0022631 Nos1ap protein_coding protein_coding MGP_CASTEiJ_T0022632.1 MGP_CASTEiJ_G0016075.1 mouse_genomes_project 1 173774059 173777352 - Nos1ap protein_coding retained_intron MGP_CASTEiJ_T0022633.1 MGP_CASTEiJ_G0016075.1 mouse_genomes_project 1 173775283 173780931 - Nos1ap protein_coding processed_transcript MGP_CASTEiJ_T0022634.1 MGP_CASTEiJ_G0016075.1 mouse_genomes_project 1 173784040 174073113 - MGP_CASTEiJ_P0022634 Nos1ap protein_coding protein_coding MGP_CASTEiJ_T0022635.1 MGP_CASTEiJ_G0016075.1 mouse_genomes_project 1 173784186 174073046 - MGP_CASTEiJ_P0022635 Nos1ap protein_coding protein_coding MGP_CASTEiJ_T0022636.1 MGP_CASTEiJ_G0016075.1 mouse_genomes_project 1 173794816 173918014 - Nos1ap protein_coding processed_transcript MGP_CASTEiJ_T0022637.1 MGP_CASTEiJ_G0016075.1 mouse_genomes_project 1 173829112 174073598 - Nos1ap protein_coding retained_intron MGP_CASTEiJ_T0022955.1 MGP_CASTEiJ_G0016156.1 mouse_genomes_project 1 177414081 177431692 + MGP_CASTEiJ_P0022955 Pyhin1 protein_coding protein_coding MGP_CASTEiJ_T0011614.1 MGP_CASTEiJ_G0009777.1 mouse_genomes_project 1 19714171 19714718 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000414.1 MGP_CASTEiJ_G0000360.1 mouse_genomes_project 1 35494380 35494726 - TEC TEC MGP_CASTEiJ_T0021937.1 MGP_CASTEiJ_G0015939.1 mouse_genomes_project 1 155677262 155844814 + MGP_CASTEiJ_P0021937 Nmnat2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021938.1 MGP_CASTEiJ_G0015939.1 mouse_genomes_project 1 155677267 155844911 + MGP_CASTEiJ_P0021938 Nmnat2 protein_coding protein_coding MGP_CASTEiJ_T0021939.1 MGP_CASTEiJ_G0015939.1 mouse_genomes_project 1 155677310 155819736 + MGP_CASTEiJ_P0021939 Nmnat2 protein_coding protein_coding MGP_CASTEiJ_T0021940.1 MGP_CASTEiJ_G0015939.1 mouse_genomes_project 1 155677543 155808972 + Nmnat2 protein_coding processed_transcript MGP_CASTEiJ_T0021941.1 MGP_CASTEiJ_G0015939.1 mouse_genomes_project 1 155677641 155848909 + MGP_CASTEiJ_P0021941 Nmnat2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021942.1 MGP_CASTEiJ_G0015939.1 mouse_genomes_project 1 155765836 155806283 + Nmnat2 protein_coding retained_intron MGP_CASTEiJ_T0021943.1 MGP_CASTEiJ_G0015939.1 mouse_genomes_project 1 155819127 155820246 + Nmnat2 protein_coding processed_transcript MGP_CASTEiJ_T0020054.1 MGP_CASTEiJ_G0015545.1 mouse_genomes_project 1 75144985 75148283 + MGP_CASTEiJ_P0020054 Inha protein_coding protein_coding MGP_CASTEiJ_T0099091.1 MGP_CASTEiJ_G0036004.1 mouse_genomes_project 1 64191629 64191784 - Gm24788 snRNA snRNA MGP_CASTEiJ_T0005713.1 MGP_CASTEiJ_G0004805.1 mouse_genomes_project 1 120074452 120097355 - Gm29456 lincRNA lincRNA MGP_CASTEiJ_T0022200.1 MGP_CASTEiJ_G0015984.1 mouse_genomes_project 1 162611826 163049311 + MGP_CASTEiJ_P0022200 Tnr protein_coding protein_coding MGP_CASTEiJ_T0022201.1 MGP_CASTEiJ_G0015984.1 mouse_genomes_project 1 162611898 162839455 + Tnr protein_coding retained_intron MGP_CASTEiJ_T0022202.1 MGP_CASTEiJ_G0015984.1 mouse_genomes_project 1 162839169 163041990 + MGP_CASTEiJ_P0022202 Tnr protein_coding protein_coding MGP_CASTEiJ_T0022203.1 MGP_CASTEiJ_G0015984.1 mouse_genomes_project 1 162882599 162964439 + MGP_CASTEiJ_P0022203 Tnr protein_coding protein_coding MGP_CASTEiJ_T0022204.1 MGP_CASTEiJ_G0015984.1 mouse_genomes_project 1 162964493 162978002 + MGP_CASTEiJ_P0022204 Tnr protein_coding protein_coding MGP_CASTEiJ_T0022205.1 MGP_CASTEiJ_G0015984.1 mouse_genomes_project 1 162972286 163064685 + MGP_CASTEiJ_P0022205 Tnr protein_coding unknown_likely_coding MGP_CASTEiJ_T0021025.1 MGP_CASTEiJ_G0015753.1 mouse_genomes_project 1 120942464 120950250 - MGP_CASTEiJ_P0021025 Dbi protein_coding protein_coding MGP_CASTEiJ_T0021026.1 MGP_CASTEiJ_G0015753.1 mouse_genomes_project 1 120942474 120950189 - MGP_CASTEiJ_P0021026 Dbi protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021027.1 MGP_CASTEiJ_G0015753.1 mouse_genomes_project 1 120942521 120949311 - MGP_CASTEiJ_P0021027 Dbi protein_coding protein_coding MGP_CASTEiJ_T0021028.1 MGP_CASTEiJ_G0015753.1 mouse_genomes_project 1 120942553 120949343 - Dbi protein_coding processed_transcript MGP_CASTEiJ_T0021029.1 MGP_CASTEiJ_G0015753.1 mouse_genomes_project 1 120942584 120950109 - MGP_CASTEiJ_P0021029 Dbi protein_coding protein_coding MGP_CASTEiJ_T0021030.1 MGP_CASTEiJ_G0015753.1 mouse_genomes_project 1 120945174 120950219 - Dbi protein_coding retained_intron MGP_CASTEiJ_T0021031.1 MGP_CASTEiJ_G0015753.1 mouse_genomes_project 1 120948924 120950186 - Dbi protein_coding retained_intron MGP_CASTEiJ_T0101915.1 MGP_CASTEiJ_G0038640.1 mouse_genomes_project 1 78202083 78202345 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011980.1 MGP_CASTEiJ_G0010143.1 mouse_genomes_project 1 168962591 168963381 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020712.1 MGP_CASTEiJ_G0015687.1 mouse_genomes_project 1 93801984 93808631 - MGP_CASTEiJ_P0020712 Mterf4 protein_coding protein_coding MGP_CASTEiJ_T0020713.1 MGP_CASTEiJ_G0015687.1 mouse_genomes_project 1 93803958 93808683 - MGP_CASTEiJ_P0020713 Mterf4 protein_coding protein_coding MGP_CASTEiJ_T0020714.1 MGP_CASTEiJ_G0015687.1 mouse_genomes_project 1 93804183 93805664 - Mterf4 protein_coding processed_transcript MGP_CASTEiJ_T0020715.1 MGP_CASTEiJ_G0015687.1 mouse_genomes_project 1 93804678 93808632 - MGP_CASTEiJ_P0020715 Mterf4 protein_coding protein_coding MGP_CASTEiJ_T0020716.1 MGP_CASTEiJ_G0015687.1 mouse_genomes_project 1 93806259 93808647 - Mterf4 protein_coding retained_intron MGP_CASTEiJ_T0018853.1 MGP_CASTEiJ_G0015329.1 mouse_genomes_project 1 41652347 41706981 - MGP_CASTEiJ_P0018853 Tgfbrap1 protein_coding protein_coding MGP_CASTEiJ_T0018854.1 MGP_CASTEiJ_G0015329.1 mouse_genomes_project 1 41652367 41701079 - MGP_CASTEiJ_P0018854 Tgfbrap1 protein_coding protein_coding MGP_CASTEiJ_T0018855.1 MGP_CASTEiJ_G0015329.1 mouse_genomes_project 1 41659834 41667057 - Tgfbrap1 protein_coding retained_intron MGP_CASTEiJ_T0018856.1 MGP_CASTEiJ_G0015329.1 mouse_genomes_project 1 41666009 41700797 - MGP_CASTEiJ_P0018856 Tgfbrap1 protein_coding protein_coding MGP_CASTEiJ_T0018857.1 MGP_CASTEiJ_G0015329.1 mouse_genomes_project 1 41678425 41706967 - MGP_CASTEiJ_P0018857 Tgfbrap1 protein_coding protein_coding MGP_CASTEiJ_T0018858.1 MGP_CASTEiJ_G0015329.1 mouse_genomes_project 1 41681194 41700813 - Tgfbrap1 protein_coding retained_intron MGP_CASTEiJ_T0018859.1 MGP_CASTEiJ_G0015329.1 mouse_genomes_project 1 41682002 41706996 - Tgfbrap1 protein_coding retained_intron MGP_CASTEiJ_T0018860.1 MGP_CASTEiJ_G0015329.1 mouse_genomes_project 1 41683134 41706723 - MGP_CASTEiJ_P0018860 Tgfbrap1 protein_coding protein_coding MGP_CASTEiJ_T0002900.1 MGP_CASTEiJ_G0002726.1 mouse_genomes_project 1 198183790 198188868 + Gm15872 antisense antisense MGP_CASTEiJ_T0009235.1 MGP_CASTEiJ_G0007423.1 mouse_genomes_project 1 32475997 32476076 - Mir5103 miRNA miRNA MGP_CASTEiJ_T0011683.1 MGP_CASTEiJ_G0009846.1 mouse_genomes_project 1 44622469 44622733 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011836.1 MGP_CASTEiJ_G0009999.1 mouse_genomes_project 1 104989956 104990432 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020896.1 MGP_CASTEiJ_G0015723.1 mouse_genomes_project 1 107461989 107486414 + MGP_CASTEiJ_P0020896 Serpinb5 protein_coding protein_coding MGP_CASTEiJ_T0020897.1 MGP_CASTEiJ_G0015723.1 mouse_genomes_project 1 107461990 107483411 + MGP_CASTEiJ_P0020897 Serpinb5 protein_coding protein_coding MGP_CASTEiJ_T0020898.1 MGP_CASTEiJ_G0015723.1 mouse_genomes_project 1 107462019 107486414 + MGP_CASTEiJ_P0020898 Serpinb5 protein_coding protein_coding MGP_CASTEiJ_T0020899.1 MGP_CASTEiJ_G0015723.1 mouse_genomes_project 1 107473375 107486413 + MGP_CASTEiJ_P0020899 Serpinb5 protein_coding protein_coding MGP_CASTEiJ_T0005776.1 MGP_CASTEiJ_G0004856.1 mouse_genomes_project 1 153713730 153718018 + C730036E19Rik lincRNA lincRNA MGP_CASTEiJ_T0019857.1 MGP_CASTEiJ_G0015516.1 mouse_genomes_project 1 74451176 74463806 + MGP_CASTEiJ_P0019857 Wnt10a protein_coding protein_coding MGP_CASTEiJ_T0019858.1 MGP_CASTEiJ_G0015516.1 mouse_genomes_project 1 74452979 74463123 + MGP_CASTEiJ_P0019858 Wnt10a protein_coding protein_coding MGP_CASTEiJ_T0011711.1 MGP_CASTEiJ_G0009874.1 mouse_genomes_project 1 51487027 51487438 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005901.1 MGP_CASTEiJ_G0004953.1 mouse_genomes_project 1 200059741 200066026 - Gm32250 lincRNA lincRNA MGP_CASTEiJ_T0005548.1 MGP_CASTEiJ_G0004679.1 mouse_genomes_project 1 40775184 40776568 + Gm9915 lincRNA lincRNA MGP_CASTEiJ_T0005549.1 MGP_CASTEiJ_G0004679.1 mouse_genomes_project 1 40775185 40776568 + Gm9915 lincRNA lincRNA MGP_CASTEiJ_T0011919.1 MGP_CASTEiJ_G0010082.1 mouse_genomes_project 1 143489826 143490388 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000564.1 MGP_CASTEiJ_G0000510.1 mouse_genomes_project 1 124377807 124379864 - TEC TEC MGP_CASTEiJ_T0005748.1 MGP_CASTEiJ_G0004833.1 mouse_genomes_project 1 136013943 136017919 + Platr1 lincRNA lincRNA MGP_CASTEiJ_T0002691.1 MGP_CASTEiJ_G0002567.1 mouse_genomes_project 1 38933704 38942191 - Gm35801 antisense antisense MGP_CASTEiJ_T0002692.1 MGP_CASTEiJ_G0002567.1 mouse_genomes_project 1 38933724 38942177 - Gm35801 antisense antisense MGP_CASTEiJ_T0000430.1 MGP_CASTEiJ_G0000376.1 mouse_genomes_project 1 44096349 44103554 - TEC TEC MGP_CASTEiJ_T0023301.1 MGP_CASTEiJ_G0016241.1 mouse_genomes_project 1 187256510 187356023 + MGP_CASTEiJ_P0023301 Susd4 protein_coding protein_coding MGP_CASTEiJ_T0023302.1 MGP_CASTEiJ_G0016241.1 mouse_genomes_project 1 187256662 187395811 + MGP_CASTEiJ_P0023302 Susd4 protein_coding protein_coding MGP_CASTEiJ_T0023303.1 MGP_CASTEiJ_G0016241.1 mouse_genomes_project 1 187257045 187335333 + MGP_CASTEiJ_P0023303 Susd4 protein_coding protein_coding MGP_CASTEiJ_T0023304.1 MGP_CASTEiJ_G0016241.1 mouse_genomes_project 1 187257206 187335359 + MGP_CASTEiJ_P0023304 Susd4 protein_coding protein_coding MGP_CASTEiJ_T0023305.1 MGP_CASTEiJ_G0016241.1 mouse_genomes_project 1 187257550 187397169 + MGP_CASTEiJ_P0023305 Susd4 protein_coding protein_coding MGP_CASTEiJ_T0021577.1 MGP_CASTEiJ_G0015873.1 mouse_genomes_project 1 137041313 137096049 - MGP_CASTEiJ_P0021577 Ipo9 protein_coding protein_coding MGP_CASTEiJ_T0021578.1 MGP_CASTEiJ_G0015873.1 mouse_genomes_project 1 137043463 137096008 - MGP_CASTEiJ_P0021578 Ipo9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021579.1 MGP_CASTEiJ_G0015873.1 mouse_genomes_project 1 137043463 137096041 - MGP_CASTEiJ_P0021579 Ipo9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021580.1 MGP_CASTEiJ_G0015873.1 mouse_genomes_project 1 137044119 137050084 - MGP_CASTEiJ_P0021580 Ipo9 protein_coding protein_coding MGP_CASTEiJ_T0021581.1 MGP_CASTEiJ_G0015873.1 mouse_genomes_project 1 137044807 137050039 - Ipo9 protein_coding retained_intron MGP_CASTEiJ_T0021582.1 MGP_CASTEiJ_G0015873.1 mouse_genomes_project 1 137045288 137050190 - Ipo9 protein_coding retained_intron MGP_CASTEiJ_T0021583.1 MGP_CASTEiJ_G0015873.1 mouse_genomes_project 1 137045393 137046567 - Ipo9 protein_coding retained_intron MGP_CASTEiJ_T0021584.1 MGP_CASTEiJ_G0015873.1 mouse_genomes_project 1 137050105 137051284 - Ipo9 protein_coding retained_intron MGP_CASTEiJ_T0021585.1 MGP_CASTEiJ_G0015873.1 mouse_genomes_project 1 137050927 137068176 - Ipo9 protein_coding processed_transcript MGP_CASTEiJ_T0021586.1 MGP_CASTEiJ_G0015873.1 mouse_genomes_project 1 137055621 137068267 - Ipo9 protein_coding retained_intron MGP_CASTEiJ_T0021587.1 MGP_CASTEiJ_G0015873.1 mouse_genomes_project 1 137067125 137095983 - MGP_CASTEiJ_P0021587 Ipo9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021588.1 MGP_CASTEiJ_G0015873.1 mouse_genomes_project 1 137070831 137071951 - Ipo9 protein_coding retained_intron MGP_CASTEiJ_T0021589.1 MGP_CASTEiJ_G0015873.1 mouse_genomes_project 1 137071281 137084637 - Ipo9 protein_coding retained_intron MGP_CASTEiJ_T0021590.1 MGP_CASTEiJ_G0015873.1 mouse_genomes_project 1 137072675 137095969 - MGP_CASTEiJ_P0021590 Ipo9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021751.1 MGP_CASTEiJ_G0015904.1 mouse_genomes_project 1 141458263 141479454 - MGP_CASTEiJ_P0021751 Cfhr1 protein_coding protein_coding MGP_CASTEiJ_T0021752.1 MGP_CASTEiJ_G0015904.1 mouse_genomes_project 1 141458801 141479340 - MGP_CASTEiJ_P0021752 Cfhr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021753.1 MGP_CASTEiJ_G0015904.1 mouse_genomes_project 1 141464872 141467778 - MGP_CASTEiJ_P0021753 Cfhr1 protein_coding protein_coding MGP_CASTEiJ_T0019975.1 MGP_CASTEiJ_G0015535.1 mouse_genomes_project 1 74874442 74892962 - MGP_CASTEiJ_P0019975 Ptprn protein_coding protein_coding MGP_CASTEiJ_T0019976.1 MGP_CASTEiJ_G0015535.1 mouse_genomes_project 1 74885695 74886823 - Ptprn protein_coding retained_intron MGP_CASTEiJ_T0019977.1 MGP_CASTEiJ_G0015535.1 mouse_genomes_project 1 74887316 74892663 - MGP_CASTEiJ_P0019977 Ptprn protein_coding protein_coding MGP_CASTEiJ_T0019978.1 MGP_CASTEiJ_G0015535.1 mouse_genomes_project 1 74887316 74892799 - MGP_CASTEiJ_P0019978 Ptprn protein_coding protein_coding MGP_CASTEiJ_T0019979.1 MGP_CASTEiJ_G0015535.1 mouse_genomes_project 1 74887384 74893251 - MGP_CASTEiJ_P0019979 Ptprn protein_coding protein_coding MGP_CASTEiJ_T0019980.1 MGP_CASTEiJ_G0015535.1 mouse_genomes_project 1 74887408 74892957 - Ptprn protein_coding processed_transcript MGP_CASTEiJ_T0023481.1 MGP_CASTEiJ_G0016277.1 mouse_genomes_project 1 195885086 195907495 + MGP_CASTEiJ_P0023481 Angel2 protein_coding protein_coding MGP_CASTEiJ_T0023482.1 MGP_CASTEiJ_G0016277.1 mouse_genomes_project 1 195888466 195899001 + Angel2 protein_coding retained_intron MGP_CASTEiJ_T0023483.1 MGP_CASTEiJ_G0016277.1 mouse_genomes_project 1 195888466 195907495 + MGP_CASTEiJ_P0023483 Angel2 protein_coding protein_coding MGP_CASTEiJ_T0023484.1 MGP_CASTEiJ_G0016277.1 mouse_genomes_project 1 195888466 195907495 + MGP_CASTEiJ_P0023484 Angel2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023485.1 MGP_CASTEiJ_G0016277.1 mouse_genomes_project 1 195888466 195907495 + MGP_CASTEiJ_P0023485 Angel2 protein_coding protein_coding MGP_CASTEiJ_T0023486.1 MGP_CASTEiJ_G0016277.1 mouse_genomes_project 1 195888797 195898569 + Angel2 protein_coding retained_intron MGP_CASTEiJ_T0023487.1 MGP_CASTEiJ_G0016277.1 mouse_genomes_project 1 195892736 195898043 + MGP_CASTEiJ_P0023487 Angel2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023488.1 MGP_CASTEiJ_G0016277.1 mouse_genomes_project 1 195894391 195905636 + MGP_CASTEiJ_P0023488 Angel2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023489.1 MGP_CASTEiJ_G0016277.1 mouse_genomes_project 1 195897817 195899833 + Angel2 protein_coding retained_intron MGP_CASTEiJ_T0023490.1 MGP_CASTEiJ_G0016277.1 mouse_genomes_project 1 195898009 195907495 + Angel2 protein_coding processed_transcript MGP_CASTEiJ_T0019629.1 MGP_CASTEiJ_G0015473.1 mouse_genomes_project 1 67305986 68452483 - MGP_CASTEiJ_P0019629 Erbb4 protein_coding protein_coding MGP_CASTEiJ_T0019630.1 MGP_CASTEiJ_G0015473.1 mouse_genomes_project 1 67305986 68452786 - MGP_CASTEiJ_P0019630 Erbb4 protein_coding protein_coding MGP_CASTEiJ_T0019631.1 MGP_CASTEiJ_G0015473.1 mouse_genomes_project 1 67533790 68452483 - MGP_CASTEiJ_P0019631 Erbb4 protein_coding protein_coding MGP_CASTEiJ_T0019632.1 MGP_CASTEiJ_G0015473.1 mouse_genomes_project 1 67567679 67575895 - Erbb4 protein_coding processed_transcript MGP_CASTEiJ_T0019633.1 MGP_CASTEiJ_G0015473.1 mouse_genomes_project 1 67575726 67614361 - Erbb4 protein_coding retained_intron MGP_CASTEiJ_T0005812.1 MGP_CASTEiJ_G0004884.1 mouse_genomes_project 1 168001554 168014577 - lincRNA lincRNA MGP_CASTEiJ_T0005813.1 MGP_CASTEiJ_G0004884.1 mouse_genomes_project 1 168005784 168014605 - lincRNA lincRNA MGP_CASTEiJ_T0019571.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65395416 65605809 + MGP_CASTEiJ_P0019571 protein_coding protein_coding MGP_CASTEiJ_T0019572.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65395456 65667933 + MGP_CASTEiJ_P0019572 protein_coding protein_coding MGP_CASTEiJ_T0019573.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65395459 65668484 + MGP_CASTEiJ_P0019573 protein_coding protein_coding MGP_CASTEiJ_T0019574.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65395614 65547334 + protein_coding processed_transcript MGP_CASTEiJ_T0019575.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65395693 65416543 + protein_coding processed_transcript MGP_CASTEiJ_T0019576.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65474260 65668482 + MGP_CASTEiJ_P0019576 protein_coding protein_coding MGP_CASTEiJ_T0019577.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65474275 65668482 + MGP_CASTEiJ_P0019577 protein_coding protein_coding MGP_CASTEiJ_T0019578.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65546613 65665094 + MGP_CASTEiJ_P0019578 protein_coding protein_coding MGP_CASTEiJ_T0019579.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65546730 65629411 + protein_coding retained_intron MGP_CASTEiJ_T0019580.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65546892 65606484 + protein_coding retained_intron MGP_CASTEiJ_T0019581.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65546996 65626759 + MGP_CASTEiJ_P0019581 protein_coding protein_coding MGP_CASTEiJ_T0019582.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65589866 65668484 + MGP_CASTEiJ_P0019582 protein_coding protein_coding MGP_CASTEiJ_T0019583.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65589869 65668484 + MGP_CASTEiJ_P0019583 protein_coding protein_coding MGP_CASTEiJ_T0019584.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65605703 65638805 + MGP_CASTEiJ_P0019584 protein_coding protein_coding MGP_CASTEiJ_T0019585.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65605893 65638334 + MGP_CASTEiJ_P0019585 protein_coding protein_coding MGP_CASTEiJ_T0019586.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65612127 65665861 + protein_coding processed_transcript MGP_CASTEiJ_T0019587.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65612160 65639655 + MGP_CASTEiJ_P0019587 protein_coding protein_coding MGP_CASTEiJ_T0019588.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65612167 65633681 + protein_coding processed_transcript MGP_CASTEiJ_T0019589.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65612193 65626848 + protein_coding retained_intron MGP_CASTEiJ_T0019590.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65640664 65651413 + protein_coding processed_transcript MGP_CASTEiJ_T0019591.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65641514 65664194 + MGP_CASTEiJ_P0019591 protein_coding protein_coding MGP_CASTEiJ_T0019592.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65641514 65664194 + MGP_CASTEiJ_P0019592 protein_coding protein_coding MGP_CASTEiJ_T0019593.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65642195 65664171 + MGP_CASTEiJ_P0019593 protein_coding protein_coding MGP_CASTEiJ_T0019594.1 MGP_CASTEiJ_G0015465.1 mouse_genomes_project 1 65659523 65665359 + MGP_CASTEiJ_P0019594 protein_coding protein_coding MGP_CASTEiJ_T0005755.1 MGP_CASTEiJ_G0004840.1 mouse_genomes_project 1 138349889 138352268 - 4933409D19Rik lincRNA lincRNA MGP_CASTEiJ_T0005599.1 MGP_CASTEiJ_G0004713.1 mouse_genomes_project 1 60534473 60535533 + Gm28449 lincRNA lincRNA MGP_CASTEiJ_T0018520.1 MGP_CASTEiJ_G0015266.1 mouse_genomes_project 1 32767922 32907993 + MGP_CASTEiJ_P0018520 protein_coding protein_coding MGP_CASTEiJ_T0018521.1 MGP_CASTEiJ_G0015266.1 mouse_genomes_project 1 32826214 32907083 + MGP_CASTEiJ_P0018521 protein_coding protein_coding MGP_CASTEiJ_T0018522.1 MGP_CASTEiJ_G0015266.1 mouse_genomes_project 1 32843856 32902338 + MGP_CASTEiJ_P0018522 protein_coding protein_coding MGP_CASTEiJ_T0018523.1 MGP_CASTEiJ_G0015266.1 mouse_genomes_project 1 32896895 32908569 + MGP_CASTEiJ_P0018523 protein_coding protein_coding MGP_CASTEiJ_T0018524.1 MGP_CASTEiJ_G0015266.1 mouse_genomes_project 1 32896912 32904422 + protein_coding retained_intron MGP_CASTEiJ_T0018525.1 MGP_CASTEiJ_G0015266.1 mouse_genomes_project 1 32896913 32901892 + protein_coding retained_intron MGP_CASTEiJ_T0018526.1 MGP_CASTEiJ_G0015266.1 mouse_genomes_project 1 32896932 32904112 + MGP_CASTEiJ_P0018526 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098734.1 MGP_CASTEiJ_G0035665.1 mouse_genomes_project 1 162409611 162409751 + Scarna3a scaRNA scaRNA MGP_CASTEiJ_T0022059.1 MGP_CASTEiJ_G0015963.1 mouse_genomes_project 1 158730412 158862841 - MGP_CASTEiJ_P0022059 Cep350 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022060.1 MGP_CASTEiJ_G0015963.1 mouse_genomes_project 1 158730418 158862986 - MGP_CASTEiJ_P0022060 Cep350 protein_coding protein_coding MGP_CASTEiJ_T0022061.1 MGP_CASTEiJ_G0015963.1 mouse_genomes_project 1 158733995 158746862 - Cep350 protein_coding processed_transcript MGP_CASTEiJ_T0022062.1 MGP_CASTEiJ_G0015963.1 mouse_genomes_project 1 158748816 158772637 - Cep350 protein_coding processed_transcript MGP_CASTEiJ_T0022063.1 MGP_CASTEiJ_G0015963.1 mouse_genomes_project 1 158754211 158771426 - Cep350 protein_coding processed_transcript MGP_CASTEiJ_T0022064.1 MGP_CASTEiJ_G0015963.1 mouse_genomes_project 1 158824828 158862621 - MGP_CASTEiJ_P0022064 Cep350 protein_coding protein_coding MGP_CASTEiJ_T0022065.1 MGP_CASTEiJ_G0015963.1 mouse_genomes_project 1 158859712 158862915 - Cep350 protein_coding retained_intron MGP_CASTEiJ_T0002784.1 MGP_CASTEiJ_G0002636.1 mouse_genomes_project 1 133819884 133821283 + Gm15849 antisense antisense MGP_CASTEiJ_T0009252.1 MGP_CASTEiJ_G0007440.1 mouse_genomes_project 1 62405894 62406032 - Gm24513 miRNA miRNA MGP_CASTEiJ_T0020087.1 MGP_CASTEiJ_G0015550.1 mouse_genomes_project 1 78072833 78187440 + MGP_CASTEiJ_P0020087 Sgpp2 protein_coding protein_coding MGP_CASTEiJ_T0005539.1 MGP_CASTEiJ_G0004673.1 mouse_genomes_project 1 36367475 36395300 + Gm5099 lincRNA lincRNA MGP_CASTEiJ_T0023458.1 MGP_CASTEiJ_G0016273.1 mouse_genomes_project 1 194599201 194753953 + MGP_CASTEiJ_P0023458 Ptpn14 protein_coding protein_coding MGP_CASTEiJ_T0023459.1 MGP_CASTEiJ_G0016273.1 mouse_genomes_project 1 194599208 194714850 + Ptpn14 protein_coding retained_intron MGP_CASTEiJ_T0023460.1 MGP_CASTEiJ_G0016273.1 mouse_genomes_project 1 194658571 194726185 + Ptpn14 protein_coding retained_intron MGP_CASTEiJ_T0023461.1 MGP_CASTEiJ_G0016273.1 mouse_genomes_project 1 194658607 194747201 + MGP_CASTEiJ_P0023461 Ptpn14 protein_coding protein_coding MGP_CASTEiJ_T0023462.1 MGP_CASTEiJ_G0016273.1 mouse_genomes_project 1 194719299 194726676 + Ptpn14 protein_coding retained_intron MGP_CASTEiJ_T0023463.1 MGP_CASTEiJ_G0016273.1 mouse_genomes_project 1 194736696 194737471 + Ptpn14 protein_coding processed_transcript MGP_CASTEiJ_T0000512.1 MGP_CASTEiJ_G0000458.1 mouse_genomes_project 1 86552345 86553520 + TEC TEC MGP_CASTEiJ_T0000350.1 MGP_CASTEiJ_G0000299.1 mouse_genomes_project 1 10769453 10771715 - TEC TEC MGP_CASTEiJ_T0011456.1 MGP_CASTEiJ_G0009644.1 mouse_genomes_project 1 108223205 108254756 + MGP_CASTEiJ_P0011456 polymorphic_pseudogene protein_coding MGP_CASTEiJ_T0011457.1 MGP_CASTEiJ_G0009644.1 mouse_genomes_project 1 108223229 108256805 + polymorphic_pseudogene processed_transcript MGP_CASTEiJ_T0011458.1 MGP_CASTEiJ_G0009644.1 mouse_genomes_project 1 108226541 108254606 + MGP_CASTEiJ_P0011458 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0022368.1 MGP_CASTEiJ_G0016012.1 mouse_genomes_project 1 166120134 166146008 - MGP_CASTEiJ_P0022368 Fmo2 protein_coding protein_coding MGP_CASTEiJ_T0022369.1 MGP_CASTEiJ_G0016012.1 mouse_genomes_project 1 166120139 166132529 - Fmo2 protein_coding retained_intron MGP_CASTEiJ_T0022370.1 MGP_CASTEiJ_G0016012.1 mouse_genomes_project 1 166122251 166145961 - MGP_CASTEiJ_P0022370 Fmo2 protein_coding protein_coding MGP_CASTEiJ_T0022371.1 MGP_CASTEiJ_G0016012.1 mouse_genomes_project 1 166123853 166126465 - Fmo2 protein_coding processed_transcript MGP_CASTEiJ_T0022372.1 MGP_CASTEiJ_G0016012.1 mouse_genomes_project 1 166133581 166145780 - MGP_CASTEiJ_P0022372 Fmo2 protein_coding protein_coding MGP_CASTEiJ_T0022373.1 MGP_CASTEiJ_G0016012.1 mouse_genomes_project 1 166134091 166146022 - Fmo2 protein_coding retained_intron MGP_CASTEiJ_T0022374.1 MGP_CASTEiJ_G0016012.1 mouse_genomes_project 1 166144976 166146016 - Fmo2 protein_coding retained_intron MGP_CASTEiJ_T0019437.1 MGP_CASTEiJ_G0015434.1 mouse_genomes_project 1 60689867 61147673 + Pard3b protein_coding processed_transcript MGP_CASTEiJ_T0019438.1 MGP_CASTEiJ_G0015434.1 mouse_genomes_project 1 60689867 61730873 + MGP_CASTEiJ_P0019438 Pard3b protein_coding protein_coding MGP_CASTEiJ_T0019439.1 MGP_CASTEiJ_G0015434.1 mouse_genomes_project 1 60689918 60820364 + Pard3b protein_coding retained_intron MGP_CASTEiJ_T0019440.1 MGP_CASTEiJ_G0015434.1 mouse_genomes_project 1 60689929 61248899 + Pard3b protein_coding retained_intron MGP_CASTEiJ_T0019441.1 MGP_CASTEiJ_G0015434.1 mouse_genomes_project 1 60690286 61724815 + MGP_CASTEiJ_P0019441 Pard3b protein_coding protein_coding MGP_CASTEiJ_T0019442.1 MGP_CASTEiJ_G0015434.1 mouse_genomes_project 1 60690286 61730873 + MGP_CASTEiJ_P0019442 Pard3b protein_coding protein_coding MGP_CASTEiJ_T0000718.1 MGP_CASTEiJ_G0000662.1 mouse_genomes_project 1 181196842 181199605 - TEC TEC MGP_CASTEiJ_T0016346.1 MGP_CASTEiJ_G0014435.1 mouse_genomes_project 1 168177656 168188197 + Gm20743 processed_transcript lincRNA MGP_CASTEiJ_T0016347.1 MGP_CASTEiJ_G0014435.1 mouse_genomes_project 1 168177884 168250769 + Gm20743 processed_transcript antisense MGP_CASTEiJ_T0023159.1 MGP_CASTEiJ_G0016210.1 mouse_genomes_project 1 184514166 184517398 - Psen2 protein_coding processed_transcript MGP_CASTEiJ_T0023160.1 MGP_CASTEiJ_G0016210.1 mouse_genomes_project 1 184514166 184548023 - MGP_CASTEiJ_P0023160 Psen2 protein_coding protein_coding MGP_CASTEiJ_T0023161.1 MGP_CASTEiJ_G0016210.1 mouse_genomes_project 1 184514166 184544844 - MGP_CASTEiJ_P0023161 Psen2 protein_coding protein_coding MGP_CASTEiJ_T0023162.1 MGP_CASTEiJ_G0016210.1 mouse_genomes_project 1 184514168 184516901 - Psen2 protein_coding retained_intron MGP_CASTEiJ_T0023163.1 MGP_CASTEiJ_G0016210.1 mouse_genomes_project 1 184514168 184537714 - MGP_CASTEiJ_P0023163 Psen2 protein_coding protein_coding MGP_CASTEiJ_T0023164.1 MGP_CASTEiJ_G0016210.1 mouse_genomes_project 1 184514551 184517395 - Psen2 protein_coding processed_transcript MGP_CASTEiJ_T0023165.1 MGP_CASTEiJ_G0016210.1 mouse_genomes_project 1 184514572 184548013 - MGP_CASTEiJ_P0023165 Psen2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023166.1 MGP_CASTEiJ_G0016210.1 mouse_genomes_project 1 184514605 184539907 - MGP_CASTEiJ_P0023166 Psen2 protein_coding protein_coding MGP_CASTEiJ_T0023167.1 MGP_CASTEiJ_G0016210.1 mouse_genomes_project 1 184514607 184537521 - MGP_CASTEiJ_P0023167 Psen2 protein_coding protein_coding MGP_CASTEiJ_T0023168.1 MGP_CASTEiJ_G0016210.1 mouse_genomes_project 1 184514624 184517358 - Psen2 protein_coding processed_transcript MGP_CASTEiJ_T0023169.1 MGP_CASTEiJ_G0016210.1 mouse_genomes_project 1 184523068 184547967 - Psen2 protein_coding retained_intron MGP_CASTEiJ_T0023170.1 MGP_CASTEiJ_G0016210.1 mouse_genomes_project 1 184525722 184530192 - Psen2 protein_coding retained_intron MGP_CASTEiJ_T0023171.1 MGP_CASTEiJ_G0016210.1 mouse_genomes_project 1 184537401 184555111 - MGP_CASTEiJ_P0023171 Psen2 protein_coding protein_coding MGP_CASTEiJ_T0011626.1 MGP_CASTEiJ_G0009789.1 mouse_genomes_project 1 25128864 25129281 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005795.1 MGP_CASTEiJ_G0004870.1 mouse_genomes_project 1 162172145 162205666 + 4930562F17Rik lincRNA lincRNA MGP_CASTEiJ_T0000687.1 MGP_CASTEiJ_G0000631.1 mouse_genomes_project 1 165028721 165032723 - TEC TEC MGP_CASTEiJ_T0021356.1 MGP_CASTEiJ_G0015823.1 mouse_genomes_project 1 133950025 133952463 + MGP_CASTEiJ_P0021356 Tmem81 protein_coding protein_coding MGP_CASTEiJ_T0021357.1 MGP_CASTEiJ_G0015823.1 mouse_genomes_project 1 133950703 133952463 + MGP_CASTEiJ_P0021357 Tmem81 protein_coding protein_coding MGP_CASTEiJ_T0011580.1 MGP_CASTEiJ_G0009743.1 mouse_genomes_project 1 6783507 6785696 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099113.1 MGP_CASTEiJ_G0036026.1 mouse_genomes_project 1 129753594 129753699 - Gm25384 snRNA snRNA MGP_CASTEiJ_T0100251.1 MGP_CASTEiJ_G0037164.1 mouse_genomes_project 1 12442161 12442281 - Gm26345 snoRNA snoRNA MGP_CASTEiJ_T0000721.1 MGP_CASTEiJ_G0000665.1 mouse_genomes_project 1 182426965 182427559 - TEC TEC MGP_CASTEiJ_T0000722.1 MGP_CASTEiJ_G0000665.1 mouse_genomes_project 1 182427011 182427557 - TEC pseudogene MGP_CASTEiJ_T0005600.1 MGP_CASTEiJ_G0004714.1 mouse_genomes_project 1 61916170 61927254 - Gm4208 lincRNA lincRNA MGP_CASTEiJ_T0011649.1 MGP_CASTEiJ_G0009812.1 mouse_genomes_project 1 32695623 32697493 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018241.1 MGP_CASTEiJ_G0015201.1 mouse_genomes_project 1 12718350 13161231 + MGP_CASTEiJ_P0018241 Kcnb2 protein_coding protein_coding MGP_CASTEiJ_T0018242.1 MGP_CASTEiJ_G0015201.1 mouse_genomes_project 1 12744713 13172481 + MGP_CASTEiJ_P0018242 Kcnb2 protein_coding protein_coding MGP_CASTEiJ_T0021225.1 MGP_CASTEiJ_G0015795.1 mouse_genomes_project 1 132308878 132316321 - MGP_CASTEiJ_P0021225 Il19 protein_coding protein_coding MGP_CASTEiJ_T0021226.1 MGP_CASTEiJ_G0015795.1 mouse_genomes_project 1 132308880 132315463 - MGP_CASTEiJ_P0021226 Il19 protein_coding protein_coding MGP_CASTEiJ_T0021227.1 MGP_CASTEiJ_G0015795.1 mouse_genomes_project 1 132309038 132316335 - MGP_CASTEiJ_P0021227 Il19 protein_coding protein_coding MGP_CASTEiJ_T0021228.1 MGP_CASTEiJ_G0015795.1 mouse_genomes_project 1 132309080 132316293 - MGP_CASTEiJ_P0021228 Il19 protein_coding protein_coding MGP_CASTEiJ_T0099066.1 MGP_CASTEiJ_G0035979.1 mouse_genomes_project 1 6737366 6737469 + Gm24765 snRNA snRNA MGP_CASTEiJ_T0005643.1 MGP_CASTEiJ_G0004744.1 mouse_genomes_project 1 76566486 76719971 - Gm816 lincRNA lincRNA MGP_CASTEiJ_T0000508.1 MGP_CASTEiJ_G0000454.1 mouse_genomes_project 1 84680423 84684664 - TEC TEC MGP_CASTEiJ_T0099067.1 MGP_CASTEiJ_G0035980.1 mouse_genomes_project 1 7141352 7141457 - Gm22607 snRNA snRNA MGP_CASTEiJ_T0020117.1 MGP_CASTEiJ_G0015559.1 mouse_genomes_project 1 79514700 79567966 - MGP_CASTEiJ_P0020117 Wdfy1 protein_coding protein_coding MGP_CASTEiJ_T0020118.1 MGP_CASTEiJ_G0015559.1 mouse_genomes_project 1 79517833 79567935 - MGP_CASTEiJ_P0020118 Wdfy1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020119.1 MGP_CASTEiJ_G0015559.1 mouse_genomes_project 1 79530271 79582082 - MGP_CASTEiJ_P0020119 Wdfy1 protein_coding protein_coding MGP_CASTEiJ_T0020120.1 MGP_CASTEiJ_G0015559.1 mouse_genomes_project 1 79531970 79567989 - MGP_CASTEiJ_P0020120 Wdfy1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020121.1 MGP_CASTEiJ_G0015559.1 mouse_genomes_project 1 79531975 79567966 - MGP_CASTEiJ_P0020121 Wdfy1 protein_coding protein_coding MGP_CASTEiJ_T0020122.1 MGP_CASTEiJ_G0015559.1 mouse_genomes_project 1 79531988 79567966 - MGP_CASTEiJ_P0020122 Wdfy1 protein_coding protein_coding MGP_CASTEiJ_T0020123.1 MGP_CASTEiJ_G0015559.1 mouse_genomes_project 1 79532177 79535668 - Wdfy1 protein_coding processed_transcript MGP_CASTEiJ_T0020124.1 MGP_CASTEiJ_G0015559.1 mouse_genomes_project 1 79539078 79567918 - Wdfy1 protein_coding retained_intron MGP_CASTEiJ_T0020125.1 MGP_CASTEiJ_G0015559.1 mouse_genomes_project 1 79539311 79568238 - MGP_CASTEiJ_P0020125 Wdfy1 protein_coding protein_coding MGP_CASTEiJ_T0022241.1 MGP_CASTEiJ_G0015991.1 mouse_genomes_project 1 164136152 164139348 + Serpinc1 protein_coding retained_intron MGP_CASTEiJ_T0022242.1 MGP_CASTEiJ_G0015991.1 mouse_genomes_project 1 164136173 164159377 + MGP_CASTEiJ_P0022242 Serpinc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022243.1 MGP_CASTEiJ_G0015991.1 mouse_genomes_project 1 164136255 164146961 + MGP_CASTEiJ_P0022243 Serpinc1 protein_coding protein_coding MGP_CASTEiJ_T0022244.1 MGP_CASTEiJ_G0015991.1 mouse_genomes_project 1 164144389 164147051 + Serpinc1 protein_coding retained_intron MGP_CASTEiJ_T0022245.1 MGP_CASTEiJ_G0015991.1 mouse_genomes_project 1 164144449 164164948 + MGP_CASTEiJ_P0022245 Serpinc1 protein_coding protein_coding MGP_CASTEiJ_T0022246.1 MGP_CASTEiJ_G0015991.1 mouse_genomes_project 1 164144743 164159406 + MGP_CASTEiJ_P0022246 Serpinc1 protein_coding protein_coding MGP_CASTEiJ_T0022247.1 MGP_CASTEiJ_G0015991.1 mouse_genomes_project 1 164146679 164164948 + MGP_CASTEiJ_P0022247 Serpinc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022389.1 MGP_CASTEiJ_G0016018.1 mouse_genomes_project 1 166956827 166973765 - MGP_CASTEiJ_P0022389 Mettl11b protein_coding protein_coding MGP_CASTEiJ_T0022390.1 MGP_CASTEiJ_G0016018.1 mouse_genomes_project 1 166957570 166973765 - MGP_CASTEiJ_P0022390 Mettl11b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020799.1 MGP_CASTEiJ_G0015703.1 mouse_genomes_project 1 95875725 95898947 + MGP_CASTEiJ_P0020799 Fam174a protein_coding protein_coding MGP_CASTEiJ_T0020800.1 MGP_CASTEiJ_G0015703.1 mouse_genomes_project 1 95875730 95889883 + MGP_CASTEiJ_P0020800 Fam174a protein_coding protein_coding MGP_CASTEiJ_T0020801.1 MGP_CASTEiJ_G0015703.1 mouse_genomes_project 1 95875869 95888258 + MGP_CASTEiJ_P0020801 Fam174a protein_coding unknown_likely_coding MGP_CASTEiJ_T0011772.1 MGP_CASTEiJ_G0009935.1 mouse_genomes_project 1 70472017 70472396 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100265.1 MGP_CASTEiJ_G0037178.1 mouse_genomes_project 1 37833923 37834139 + Gm24826 snoRNA snoRNA MGP_CASTEiJ_T0011909.1 MGP_CASTEiJ_G0010072.1 mouse_genomes_project 1 138588786 138589435 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023113.1 MGP_CASTEiJ_G0016206.1 mouse_genomes_project 1 183991755 184053046 - MGP_CASTEiJ_P0023113 Ahctf1 protein_coding protein_coding MGP_CASTEiJ_T0023114.1 MGP_CASTEiJ_G0016206.1 mouse_genomes_project 1 183992198 183999272 - MGP_CASTEiJ_P0023114 Ahctf1 protein_coding protein_coding MGP_CASTEiJ_T0023115.1 MGP_CASTEiJ_G0016206.1 mouse_genomes_project 1 183992952 184000443 - Ahctf1 protein_coding retained_intron MGP_CASTEiJ_T0023116.1 MGP_CASTEiJ_G0016206.1 mouse_genomes_project 1 184000561 184004859 - MGP_CASTEiJ_P0023116 Ahctf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023117.1 MGP_CASTEiJ_G0016206.1 mouse_genomes_project 1 184007137 184012784 - MGP_CASTEiJ_P0023117 Ahctf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023118.1 MGP_CASTEiJ_G0016206.1 mouse_genomes_project 1 184015180 184017773 - MGP_CASTEiJ_P0023118 Ahctf1 protein_coding protein_coding MGP_CASTEiJ_T0023119.1 MGP_CASTEiJ_G0016206.1 mouse_genomes_project 1 184039477 184045467 - Ahctf1 protein_coding retained_intron MGP_CASTEiJ_T0023120.1 MGP_CASTEiJ_G0016206.1 mouse_genomes_project 1 184048200 184051434 - Ahctf1 protein_coding retained_intron MGP_CASTEiJ_T0023121.1 MGP_CASTEiJ_G0016206.1 mouse_genomes_project 1 184048206 184052972 - Ahctf1 protein_coding retained_intron MGP_CASTEiJ_T0020919.1 MGP_CASTEiJ_G0015734.1 mouse_genomes_project 1 108301086 108323934 + MGP_CASTEiJ_P0020919 Serpinb8 protein_coding protein_coding MGP_CASTEiJ_T0020920.1 MGP_CASTEiJ_G0015734.1 mouse_genomes_project 1 108301086 108321541 + MGP_CASTEiJ_P0020920 Serpinb8 protein_coding protein_coding MGP_CASTEiJ_T0020921.1 MGP_CASTEiJ_G0015734.1 mouse_genomes_project 1 108301126 108317987 + Serpinb8 protein_coding retained_intron MGP_CASTEiJ_T0020922.1 MGP_CASTEiJ_G0015734.1 mouse_genomes_project 1 108317716 108319174 + MGP_CASTEiJ_P0020922 Serpinb8 protein_coding protein_coding MGP_CASTEiJ_T0009275.1 MGP_CASTEiJ_G0007463.1 mouse_genomes_project 1 93773561 93773623 + Mir6901 miRNA miRNA MGP_CASTEiJ_T0019192.1 MGP_CASTEiJ_G0015393.1 mouse_genomes_project 1 56256758 56267739 + MGP_CASTEiJ_P0019192 9430016H08Rik protein_coding protein_coding MGP_CASTEiJ_T0011688.1 MGP_CASTEiJ_G0009851.1 mouse_genomes_project 1 46806319 46807305 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022391.1 MGP_CASTEiJ_G0016019.1 mouse_genomes_project 1 167029235 167158871 + MGP_CASTEiJ_P0022391 Kifap3 protein_coding protein_coding MGP_CASTEiJ_T0022392.1 MGP_CASTEiJ_G0016019.1 mouse_genomes_project 1 167029235 167158871 + MGP_CASTEiJ_P0022392 Kifap3 protein_coding protein_coding MGP_CASTEiJ_T0000505.1 MGP_CASTEiJ_G0000451.1 mouse_genomes_project 1 83432030 83432828 - TEC TEC MGP_CASTEiJ_T0011724.1 MGP_CASTEiJ_G0009887.1 mouse_genomes_project 1 54169925 54170815 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005544.1 MGP_CASTEiJ_G0004676.1 mouse_genomes_project 1 39589964 39602532 - 4930448I06Rik lincRNA lincRNA MGP_CASTEiJ_T0011971.1 MGP_CASTEiJ_G0010134.1 mouse_genomes_project 1 165551167 165551597 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000331.1 MGP_CASTEiJ_G0000280.1 mouse_genomes_project 1 5741814 5744348 - TEC TEC MGP_CASTEiJ_T0000665.1 MGP_CASTEiJ_G0000609.1 mouse_genomes_project 1 160892413 161111517 + TEC TEC MGP_CASTEiJ_T0002857.1 MGP_CASTEiJ_G0002694.1 mouse_genomes_project 1 181468217 181468977 - Gm26801 antisense antisense MGP_CASTEiJ_T0002858.1 MGP_CASTEiJ_G0002694.1 mouse_genomes_project 1 181468939 181483435 - Gm26801 antisense antisense MGP_CASTEiJ_T0100333.1 MGP_CASTEiJ_G0037246.1 mouse_genomes_project 1 164200311 164200387 + Gm25789 snoRNA snoRNA MGP_CASTEiJ_T0021242.1 MGP_CASTEiJ_G0015800.1 mouse_genomes_project 1 132574682 132643295 - MGP_CASTEiJ_P0021242 Rassf5 protein_coding protein_coding MGP_CASTEiJ_T0021243.1 MGP_CASTEiJ_G0015800.1 mouse_genomes_project 1 132574682 132596260 - MGP_CASTEiJ_P0021243 Rassf5 protein_coding protein_coding MGP_CASTEiJ_T0021244.1 MGP_CASTEiJ_G0015800.1 mouse_genomes_project 1 132574682 132643295 - MGP_CASTEiJ_P0021244 Rassf5 protein_coding protein_coding MGP_CASTEiJ_T0021245.1 MGP_CASTEiJ_G0015800.1 mouse_genomes_project 1 132603753 132643295 - Rassf5 protein_coding processed_transcript MGP_CASTEiJ_T0020224.1 MGP_CASTEiJ_G0015580.1 mouse_genomes_project 1 84384158 84711962 - MGP_CASTEiJ_P0020224 Dner protein_coding protein_coding MGP_CASTEiJ_T0020225.1 MGP_CASTEiJ_G0015580.1 mouse_genomes_project 1 84554673 84711760 - Dner protein_coding retained_intron MGP_CASTEiJ_T0020226.1 MGP_CASTEiJ_G0015580.1 mouse_genomes_project 1 84587624 84651669 - MGP_CASTEiJ_P0020226 Dner protein_coding protein_coding MGP_CASTEiJ_T0020227.1 MGP_CASTEiJ_G0015580.1 mouse_genomes_project 1 84589909 84634995 - MGP_CASTEiJ_P0020227 Dner protein_coding protein_coding MGP_CASTEiJ_T0099075.1 MGP_CASTEiJ_G0035988.1 mouse_genomes_project 1 30213453 30213560 - Gm25814 snRNA snRNA MGP_CASTEiJ_T0020494.1 MGP_CASTEiJ_G0015640.1 mouse_genomes_project 1 89378097 89463614 + MGP_CASTEiJ_P0020494 Sh3bp4 protein_coding protein_coding MGP_CASTEiJ_T0020495.1 MGP_CASTEiJ_G0015640.1 mouse_genomes_project 1 89378135 89416913 + Sh3bp4 protein_coding processed_transcript MGP_CASTEiJ_T0020496.1 MGP_CASTEiJ_G0015640.1 mouse_genomes_project 1 89378234 89462347 + MGP_CASTEiJ_P0020496 Sh3bp4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002697.1 MGP_CASTEiJ_G0002572.1 mouse_genomes_project 1 42404687 42406623 - Gm29155 antisense antisense MGP_CASTEiJ_T0002698.1 MGP_CASTEiJ_G0002572.1 mouse_genomes_project 1 42406311 42406580 - Gm29155 antisense antisense MGP_CASTEiJ_T0000353.1 MGP_CASTEiJ_G0000302.1 mouse_genomes_project 1 11523989 11527611 - TEC TEC MGP_CASTEiJ_T0011778.1 MGP_CASTEiJ_G0009941.1 mouse_genomes_project 1 75183469 75183817 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011870.1 MGP_CASTEiJ_G0010033.1 mouse_genomes_project 1 118951629 118952792 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021834.1 MGP_CASTEiJ_G0015922.1 mouse_genomes_project 1 152914625 152977399 + MGP_CASTEiJ_P0021834 Tpr protein_coding protein_coding MGP_CASTEiJ_T0021835.1 MGP_CASTEiJ_G0015922.1 mouse_genomes_project 1 152915038 152977519 + MGP_CASTEiJ_P0021835 Tpr protein_coding protein_coding MGP_CASTEiJ_T0021836.1 MGP_CASTEiJ_G0015922.1 mouse_genomes_project 1 152915172 152917292 + Tpr protein_coding retained_intron MGP_CASTEiJ_T0021837.1 MGP_CASTEiJ_G0015922.1 mouse_genomes_project 1 152915231 152970231 + MGP_CASTEiJ_P0021837 Tpr protein_coding unknown_likely_coding MGP_CASTEiJ_T0021838.1 MGP_CASTEiJ_G0015922.1 mouse_genomes_project 1 152936497 152938449 + Tpr protein_coding retained_intron MGP_CASTEiJ_T0021839.1 MGP_CASTEiJ_G0015922.1 mouse_genomes_project 1 152939273 152940889 + Tpr protein_coding retained_intron MGP_CASTEiJ_T0021840.1 MGP_CASTEiJ_G0015922.1 mouse_genomes_project 1 152951258 152954872 + Tpr protein_coding retained_intron MGP_CASTEiJ_T0021841.1 MGP_CASTEiJ_G0015922.1 mouse_genomes_project 1 152955893 152966914 + MGP_CASTEiJ_P0021841 Tpr protein_coding protein_coding MGP_CASTEiJ_T0021842.1 MGP_CASTEiJ_G0015922.1 mouse_genomes_project 1 152956961 152966911 + Tpr protein_coding retained_intron MGP_CASTEiJ_T0021843.1 MGP_CASTEiJ_G0015922.1 mouse_genomes_project 1 152964053 152969825 + Tpr protein_coding retained_intron MGP_CASTEiJ_T0021844.1 MGP_CASTEiJ_G0015922.1 mouse_genomes_project 1 152965526 152977511 + Tpr protein_coding retained_intron MGP_CASTEiJ_T0021845.1 MGP_CASTEiJ_G0015922.1 mouse_genomes_project 1 152966795 152977511 + Tpr protein_coding retained_intron MGP_CASTEiJ_T0021846.1 MGP_CASTEiJ_G0015922.1 mouse_genomes_project 1 152973499 152977511 + MGP_CASTEiJ_P0021846 Tpr protein_coding protein_coding MGP_CASTEiJ_T0021847.1 MGP_CASTEiJ_G0015922.1 mouse_genomes_project 1 152975037 152977513 + Tpr protein_coding retained_intron MGP_CASTEiJ_T0021848.1 MGP_CASTEiJ_G0015922.1 mouse_genomes_project 1 152976454 152977375 + Tpr protein_coding processed_transcript MGP_CASTEiJ_T0000378.1 MGP_CASTEiJ_G0000325.1 mouse_genomes_project 1 23346880 23350612 - TEC TEC MGP_CASTEiJ_T0002694.1 MGP_CASTEiJ_G0002569.1 mouse_genomes_project 1 39143332 39159691 + Gm37915 antisense antisense MGP_CASTEiJ_T0022773.1 MGP_CASTEiJ_G0016105.1 mouse_genomes_project 1 174936976 174959830 + Arhgap30 protein_coding retained_intron MGP_CASTEiJ_T0022774.1 MGP_CASTEiJ_G0016105.1 mouse_genomes_project 1 174936976 174959772 + Arhgap30 protein_coding retained_intron MGP_CASTEiJ_T0022775.1 MGP_CASTEiJ_G0016105.1 mouse_genomes_project 1 174936976 174959772 + MGP_CASTEiJ_P0022775 Arhgap30 protein_coding protein_coding MGP_CASTEiJ_T0022776.1 MGP_CASTEiJ_G0016105.1 mouse_genomes_project 1 174937021 174940766 + Arhgap30 protein_coding retained_intron MGP_CASTEiJ_T0022581.1 MGP_CASTEiJ_G0016062.1 mouse_genomes_project 1 171074583 171231259 + MGP_CASTEiJ_P0022581 Lmx1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0011693.1 MGP_CASTEiJ_G0009856.1 mouse_genomes_project 1 47384233 47385241 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005572.1 MGP_CASTEiJ_G0004691.1 mouse_genomes_project 1 49027828 49028354 - Gm29665 lincRNA lincRNA MGP_CASTEiJ_T0023228.1 MGP_CASTEiJ_G0016226.1 mouse_genomes_project 1 185520146 185542578 + MGP_CASTEiJ_P0023228 Cnih4 protein_coding protein_coding MGP_CASTEiJ_T0023229.1 MGP_CASTEiJ_G0016226.1 mouse_genomes_project 1 185526487 185544785 + MGP_CASTEiJ_P0023229 Cnih4 protein_coding protein_coding MGP_CASTEiJ_T0023230.1 MGP_CASTEiJ_G0016226.1 mouse_genomes_project 1 185526487 185546690 + MGP_CASTEiJ_P0023230 Cnih4 protein_coding protein_coding MGP_CASTEiJ_T0023231.1 MGP_CASTEiJ_G0016226.1 mouse_genomes_project 1 185530283 185542712 + Cnih4 protein_coding processed_transcript MGP_CASTEiJ_T0023232.1 MGP_CASTEiJ_G0016226.1 mouse_genomes_project 1 185531264 185542680 + Cnih4 protein_coding retained_intron MGP_CASTEiJ_T0021478.1 MGP_CASTEiJ_G0015850.1 mouse_genomes_project 1 135767454 135802880 - MGP_CASTEiJ_P0021478 Adora1 protein_coding protein_coding MGP_CASTEiJ_T0021479.1 MGP_CASTEiJ_G0015850.1 mouse_genomes_project 1 135767456 135803734 - MGP_CASTEiJ_P0021479 Adora1 protein_coding protein_coding MGP_CASTEiJ_T0021480.1 MGP_CASTEiJ_G0015850.1 mouse_genomes_project 1 135769581 135803700 - MGP_CASTEiJ_P0021480 Adora1 protein_coding protein_coding MGP_CASTEiJ_T0021481.1 MGP_CASTEiJ_G0015850.1 mouse_genomes_project 1 135771623 135803667 - MGP_CASTEiJ_P0021481 Adora1 protein_coding protein_coding MGP_CASTEiJ_T0011758.1 MGP_CASTEiJ_G0009921.1 mouse_genomes_project 1 64226078 64226736 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018600.1 MGP_CASTEiJ_G0015279.1 mouse_genomes_project 1 34701577 34710001 - MGP_CASTEiJ_P0018600 Ankrd39 protein_coding protein_coding MGP_CASTEiJ_T0099099.1 MGP_CASTEiJ_G0036012.1 mouse_genomes_project 1 87374593 87374700 - Gm22549 snRNA snRNA MGP_CASTEiJ_T0005579.1 MGP_CASTEiJ_G0004696.1 mouse_genomes_project 1 51252960 51319175 + Gm553 lincRNA lincRNA MGP_CASTEiJ_T0021445.1 MGP_CASTEiJ_G0015840.1 mouse_genomes_project 1 135184567 135189573 - MGP_CASTEiJ_P0021445 protein_coding protein_coding MGP_CASTEiJ_T0098732.1 MGP_CASTEiJ_G0035663.1 mouse_genomes_project 1 128526022 128526152 + Gm23370 scaRNA scaRNA MGP_CASTEiJ_T0005836.1 MGP_CASTEiJ_G0004904.1 mouse_genomes_project 1 181510450 181519430 + Gm37306 lincRNA lincRNA MGP_CASTEiJ_T0019451.1 MGP_CASTEiJ_G0015437.1 mouse_genomes_project 1 62058607 62203778 - MGP_CASTEiJ_P0019451 Ino80d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019452.1 MGP_CASTEiJ_G0015437.1 mouse_genomes_project 1 62167295 62222399 - MGP_CASTEiJ_P0019452 Ino80d protein_coding protein_coding MGP_CASTEiJ_T0019453.1 MGP_CASTEiJ_G0015437.1 mouse_genomes_project 1 62169455 62172882 - Ino80d protein_coding retained_intron MGP_CASTEiJ_T0019454.1 MGP_CASTEiJ_G0015437.1 mouse_genomes_project 1 62171471 62222224 - MGP_CASTEiJ_P0019454 Ino80d protein_coding protein_coding MGP_CASTEiJ_T0019455.1 MGP_CASTEiJ_G0015437.1 mouse_genomes_project 1 62171485 62222224 - MGP_CASTEiJ_P0019455 Ino80d protein_coding protein_coding MGP_CASTEiJ_T0000518.1 MGP_CASTEiJ_G0000464.1 mouse_genomes_project 1 86885035 86887640 + TEC TEC MGP_CASTEiJ_T0100293.1 MGP_CASTEiJ_G0037206.1 mouse_genomes_project 1 95132028 95132097 - Gm23389 snoRNA snoRNA MGP_CASTEiJ_T0011784.1 MGP_CASTEiJ_G0009947.1 mouse_genomes_project 1 78460508 78462777 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009285.1 MGP_CASTEiJ_G0007473.1 mouse_genomes_project 1 133628112 133628209 + Mir135b miRNA miRNA MGP_CASTEiJ_T0005833.1 MGP_CASTEiJ_G0004901.1 mouse_genomes_project 1 179531420 179536589 + Gm36307 lincRNA lincRNA MGP_CASTEiJ_T0021849.1 MGP_CASTEiJ_G0015923.1 mouse_genomes_project 1 152976995 152993183 - MGP_CASTEiJ_P0021849 Prg4 protein_coding protein_coding MGP_CASTEiJ_T0021850.1 MGP_CASTEiJ_G0015923.1 mouse_genomes_project 1 152976995 152993183 - MGP_CASTEiJ_P0021850 Prg4 protein_coding protein_coding MGP_CASTEiJ_T0021851.1 MGP_CASTEiJ_G0015923.1 mouse_genomes_project 1 152976995 152993183 - MGP_CASTEiJ_P0021851 Prg4 protein_coding protein_coding MGP_CASTEiJ_T0021852.1 MGP_CASTEiJ_G0015923.1 mouse_genomes_project 1 152976995 152993183 - MGP_CASTEiJ_P0021852 Prg4 protein_coding protein_coding MGP_CASTEiJ_T0021853.1 MGP_CASTEiJ_G0015923.1 mouse_genomes_project 1 152977399 152993750 - MGP_CASTEiJ_P0021853 Prg4 protein_coding protein_coding MGP_CASTEiJ_T0021854.1 MGP_CASTEiJ_G0015923.1 mouse_genomes_project 1 152977452 152993750 - MGP_CASTEiJ_P0021854 Prg4 protein_coding protein_coding MGP_CASTEiJ_T0021855.1 MGP_CASTEiJ_G0015923.1 mouse_genomes_project 1 152983567 152993750 - MGP_CASTEiJ_P0021855 Prg4 protein_coding protein_coding MGP_CASTEiJ_T0021856.1 MGP_CASTEiJ_G0015923.1 mouse_genomes_project 1 152985763 152993750 - MGP_CASTEiJ_P0021856 Prg4 protein_coding protein_coding MGP_CASTEiJ_T0011823.1 MGP_CASTEiJ_G0009986.1 mouse_genomes_project 1 99210732 99211447 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099123.1 MGP_CASTEiJ_G0036036.1 mouse_genomes_project 1 141740294 141740398 - Gm26271 snRNA snRNA MGP_CASTEiJ_T0018787.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38253344 38393133 + MGP_CASTEiJ_P0018787 Map4k4 protein_coding protein_coding MGP_CASTEiJ_T0018788.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38253344 38393133 + MGP_CASTEiJ_P0018788 Map4k4 protein_coding protein_coding MGP_CASTEiJ_T0018789.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38253601 38254888 + Map4k4 protein_coding retained_intron MGP_CASTEiJ_T0018790.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38253601 38353730 + MGP_CASTEiJ_P0018790 Map4k4 protein_coding protein_coding MGP_CASTEiJ_T0018791.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38253610 38391585 + MGP_CASTEiJ_P0018791 Map4k4 protein_coding protein_coding MGP_CASTEiJ_T0018792.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38253610 38391585 + MGP_CASTEiJ_P0018792 Map4k4 protein_coding protein_coding MGP_CASTEiJ_T0018793.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38253611 38391585 + MGP_CASTEiJ_P0018793 Map4k4 protein_coding protein_coding MGP_CASTEiJ_T0018794.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38253655 38391800 + MGP_CASTEiJ_P0018794 Map4k4 protein_coding protein_coding MGP_CASTEiJ_T0018795.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38253661 38391756 + MGP_CASTEiJ_P0018795 Map4k4 protein_coding protein_coding MGP_CASTEiJ_T0018796.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38323333 38343785 + Map4k4 protein_coding processed_transcript MGP_CASTEiJ_T0018797.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38324025 38337444 + Map4k4 protein_coding processed_transcript MGP_CASTEiJ_T0018798.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38365553 38366515 + Map4k4 protein_coding retained_intron MGP_CASTEiJ_T0018799.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38365852 38372770 + MGP_CASTEiJ_P0018799 Map4k4 protein_coding protein_coding MGP_CASTEiJ_T0018800.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38365853 38370867 + MGP_CASTEiJ_P0018800 Map4k4 protein_coding protein_coding MGP_CASTEiJ_T0018801.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38366630 38376751 + MGP_CASTEiJ_P0018801 Map4k4 protein_coding protein_coding MGP_CASTEiJ_T0018802.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38373413 38375385 + Map4k4 protein_coding retained_intron MGP_CASTEiJ_T0018803.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38379926 38380773 + Map4k4 protein_coding retained_intron MGP_CASTEiJ_T0018804.1 MGP_CASTEiJ_G0015315.1 mouse_genomes_project 1 38390026 38391256 + Map4k4 protein_coding retained_intron MGP_CASTEiJ_T0011692.1 MGP_CASTEiJ_G0009855.1 mouse_genomes_project 1 47283170 47284101 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101929.1 MGP_CASTEiJ_G0038654.1 mouse_genomes_project 1 103632378 103730976 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002787.1 MGP_CASTEiJ_G0002639.1 mouse_genomes_project 1 134753566 134773005 - Gm19461 antisense antisense MGP_CASTEiJ_T0002788.1 MGP_CASTEiJ_G0002639.1 mouse_genomes_project 1 134754376 134760309 - Gm19461 antisense antisense MGP_CASTEiJ_T0002789.1 MGP_CASTEiJ_G0002639.1 mouse_genomes_project 1 134757073 134757465 - Gm19461 antisense antisense MGP_CASTEiJ_T0002790.1 MGP_CASTEiJ_G0002639.1 mouse_genomes_project 1 134757455 134759543 - Gm19461 antisense antisense MGP_CASTEiJ_T0002791.1 MGP_CASTEiJ_G0002639.1 mouse_genomes_project 1 134759731 134761862 - Gm19461 antisense antisense MGP_CASTEiJ_T0000675.1 MGP_CASTEiJ_G0000619.1 mouse_genomes_project 1 163721925 163723179 - TEC TEC MGP_CASTEiJ_T0020585.1 MGP_CASTEiJ_G0015659.1 mouse_genomes_project 1 91794129 91819522 - MGP_CASTEiJ_P0020585 Ilkap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020586.1 MGP_CASTEiJ_G0015659.1 mouse_genomes_project 1 91794133 91805455 - MGP_CASTEiJ_P0020586 Ilkap protein_coding protein_coding MGP_CASTEiJ_T0020587.1 MGP_CASTEiJ_G0015659.1 mouse_genomes_project 1 91796085 91819608 - MGP_CASTEiJ_P0020587 Ilkap protein_coding protein_coding MGP_CASTEiJ_T0020588.1 MGP_CASTEiJ_G0015659.1 mouse_genomes_project 1 91796086 91819577 - Ilkap protein_coding retained_intron MGP_CASTEiJ_T0020589.1 MGP_CASTEiJ_G0015659.1 mouse_genomes_project 1 91796213 91805402 - MGP_CASTEiJ_P0020589 Ilkap protein_coding protein_coding MGP_CASTEiJ_T0020590.1 MGP_CASTEiJ_G0015659.1 mouse_genomes_project 1 91796265 91799181 - Ilkap protein_coding retained_intron MGP_CASTEiJ_T0020591.1 MGP_CASTEiJ_G0015659.1 mouse_genomes_project 1 91796308 91819618 - MGP_CASTEiJ_P0020591 Ilkap protein_coding protein_coding MGP_CASTEiJ_T0020592.1 MGP_CASTEiJ_G0015659.1 mouse_genomes_project 1 91796309 91819626 - MGP_CASTEiJ_P0020592 Ilkap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020593.1 MGP_CASTEiJ_G0015659.1 mouse_genomes_project 1 91801909 91819640 - Ilkap protein_coding processed_transcript MGP_CASTEiJ_T0020594.1 MGP_CASTEiJ_G0015659.1 mouse_genomes_project 1 91805453 91819610 - MGP_CASTEiJ_P0020594 Ilkap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020595.1 MGP_CASTEiJ_G0015659.1 mouse_genomes_project 1 91806078 91809620 - Ilkap protein_coding retained_intron MGP_CASTEiJ_T0020596.1 MGP_CASTEiJ_G0015659.1 mouse_genomes_project 1 91806167 91819603 - MGP_CASTEiJ_P0020596 Ilkap protein_coding protein_coding MGP_CASTEiJ_T0020597.1 MGP_CASTEiJ_G0015659.1 mouse_genomes_project 1 91811081 91819619 - Ilkap protein_coding retained_intron MGP_CASTEiJ_T0002833.1 MGP_CASTEiJ_G0002674.1 mouse_genomes_project 1 166542871 166549631 + Gm20471 antisense antisense MGP_CASTEiJ_T0005750.1 MGP_CASTEiJ_G0004835.1 mouse_genomes_project 1 137283485 137367735 - Gm38399 lincRNA lincRNA MGP_CASTEiJ_T0018519.1 MGP_CASTEiJ_G0015265.1 mouse_genomes_project 1 32662022 32675517 + MGP_CASTEiJ_P0018519 Amer3 protein_coding protein_coding MGP_CASTEiJ_T0018371.1 MGP_CASTEiJ_G0015235.1 mouse_genomes_project 1 21486900 21539925 + MGP_CASTEiJ_P0018371 B3gat2 protein_coding protein_coding MGP_CASTEiJ_T0018372.1 MGP_CASTEiJ_G0015235.1 mouse_genomes_project 1 21487524 21574798 + MGP_CASTEiJ_P0018372 B3gat2 protein_coding protein_coding MGP_CASTEiJ_T0016262.1 MGP_CASTEiJ_G0014412.1 mouse_genomes_project 1 50791707 50876028 + Gm28177 processed_transcript processed_transcript MGP_CASTEiJ_T0000565.1 MGP_CASTEiJ_G0000511.1 mouse_genomes_project 1 124451342 124454561 - TEC TEC MGP_CASTEiJ_T0021644.1 MGP_CASTEiJ_G0015883.1 mouse_genomes_project 1 137744242 137744809 + MGP_CASTEiJ_P0021644 Ascl5 protein_coding protein_coding MGP_CASTEiJ_T0011958.1 MGP_CASTEiJ_G0010121.1 mouse_genomes_project 1 160305328 160305729 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101937.1 MGP_CASTEiJ_G0038662.1 mouse_genomes_project 1 162265687 162267541 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011586.1 MGP_CASTEiJ_G0009749.1 mouse_genomes_project 1 8212717 8213595 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011802.1 MGP_CASTEiJ_G0009965.1 mouse_genomes_project 1 86273765 86274596 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005753.1 MGP_CASTEiJ_G0004838.1 mouse_genomes_project 1 138281783 138298317 + Gm37799 lincRNA lincRNA MGP_CASTEiJ_T0020112.1 MGP_CASTEiJ_G0015557.1 mouse_genomes_project 1 79232955 79238299 - MGP_CASTEiJ_P0020112 Scg2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020113.1 MGP_CASTEiJ_G0015557.1 mouse_genomes_project 1 79232962 79238340 - MGP_CASTEiJ_P0020113 Scg2 protein_coding protein_coding MGP_CASTEiJ_T0022596.1 MGP_CASTEiJ_G0016065.1 mouse_genomes_project 1 173077626 173119018 + MGP_CASTEiJ_P0022596 Rgs5 protein_coding protein_coding MGP_CASTEiJ_T0022597.1 MGP_CASTEiJ_G0016065.1 mouse_genomes_project 1 173077647 173107128 + MGP_CASTEiJ_P0022597 Rgs5 protein_coding protein_coding MGP_CASTEiJ_T0005682.1 MGP_CASTEiJ_G0004779.1 mouse_genomes_project 1 92775290 92782026 + Gm29099 lincRNA lincRNA MGP_CASTEiJ_T0002733.1 MGP_CASTEiJ_G0002595.1 mouse_genomes_project 1 74433246 74435750 - Gm29539 antisense antisense MGP_CASTEiJ_T0005872.1 MGP_CASTEiJ_G0004928.1 mouse_genomes_project 1 189656695 189661890 - Gm34732 lincRNA lincRNA MGP_CASTEiJ_T0100307.1 MGP_CASTEiJ_G0037220.1 mouse_genomes_project 1 123504706 123504850 + Gm25771 snoRNA snoRNA MGP_CASTEiJ_T0011897.1 MGP_CASTEiJ_G0010060.1 mouse_genomes_project 1 128217365 128218080 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002875.1 MGP_CASTEiJ_G0002709.1 mouse_genomes_project 1 191837278 191841308 + 1700007P06Rik antisense antisense MGP_CASTEiJ_T0000491.1 MGP_CASTEiJ_G0000437.1 mouse_genomes_project 1 79568918 79570743 + TEC TEC MGP_CASTEiJ_T0009318.1 MGP_CASTEiJ_G0007506.1 mouse_genomes_project 1 189908340 189908452 + Mir215 miRNA miRNA MGP_CASTEiJ_T0002855.1 MGP_CASTEiJ_G0002692.1 mouse_genomes_project 1 180748287 180755486 + antisense antisense MGP_CASTEiJ_T0011601.1 MGP_CASTEiJ_G0009764.1 mouse_genomes_project 1 15413866 15415267 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018345.1 MGP_CASTEiJ_G0015229.1 mouse_genomes_project 1 18835234 18861475 + MGP_CASTEiJ_P0018345 Gsta3 protein_coding protein_coding MGP_CASTEiJ_T0018346.1 MGP_CASTEiJ_G0015229.1 mouse_genomes_project 1 18835252 18860784 + MGP_CASTEiJ_P0018346 Gsta3 protein_coding protein_coding MGP_CASTEiJ_T0018347.1 MGP_CASTEiJ_G0015229.1 mouse_genomes_project 1 18835274 18860609 + MGP_CASTEiJ_P0018347 Gsta3 protein_coding protein_coding MGP_CASTEiJ_T0018348.1 MGP_CASTEiJ_G0015229.1 mouse_genomes_project 1 18848827 18851916 + Gsta3 protein_coding retained_intron MGP_CASTEiJ_T0002762.1 MGP_CASTEiJ_G0002621.1 mouse_genomes_project 1 105466699 105467607 - Gm15699 antisense antisense MGP_CASTEiJ_T0011571.1 MGP_CASTEiJ_G0009734.1 mouse_genomes_project 1 4935577 4937689 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100325.1 MGP_CASTEiJ_G0037238.1 mouse_genomes_project 1 164197853 164197915 + Gm22489 snoRNA snoRNA MGP_CASTEiJ_T0005673.1 MGP_CASTEiJ_G0004770.1 mouse_genomes_project 1 90634480 90637936 + Gm28723 lincRNA lincRNA MGP_CASTEiJ_T0020395.1 MGP_CASTEiJ_G0015615.1 mouse_genomes_project 1 87422693 87430995 - MGP_CASTEiJ_P0020395 Kcnj13 protein_coding protein_coding MGP_CASTEiJ_T0020396.1 MGP_CASTEiJ_G0015615.1 mouse_genomes_project 1 87423332 87425705 - MGP_CASTEiJ_P0020396 Kcnj13 protein_coding protein_coding MGP_CASTEiJ_T0098786.1 MGP_CASTEiJ_G0035717.1 mouse_genomes_project 1 68434503 68451509 - Gm16076 sense_intronic sense_intronic MGP_CASTEiJ_T0005552.1 MGP_CASTEiJ_G0004682.1 mouse_genomes_project 1 40879145 40904989 - Gm28140 lincRNA lincRNA MGP_CASTEiJ_T0011825.1 MGP_CASTEiJ_G0009988.1 mouse_genomes_project 1 100281886 100282483 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018350.1 MGP_CASTEiJ_G0015231.1 mouse_genomes_project 1 19011676 19634817 - MGP_CASTEiJ_P0018350 Kcnq5 protein_coding protein_coding MGP_CASTEiJ_T0018351.1 MGP_CASTEiJ_G0015231.1 mouse_genomes_project 1 19011681 19635178 - MGP_CASTEiJ_P0018351 Kcnq5 protein_coding protein_coding MGP_CASTEiJ_T0018352.1 MGP_CASTEiJ_G0015231.1 mouse_genomes_project 1 19015435 19634817 - MGP_CASTEiJ_P0018352 Kcnq5 protein_coding protein_coding MGP_CASTEiJ_T0018353.1 MGP_CASTEiJ_G0015231.1 mouse_genomes_project 1 19015435 19634817 - MGP_CASTEiJ_P0018353 Kcnq5 protein_coding protein_coding MGP_CASTEiJ_T0018354.1 MGP_CASTEiJ_G0015231.1 mouse_genomes_project 1 19015435 19634817 - MGP_CASTEiJ_P0018354 Kcnq5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018355.1 MGP_CASTEiJ_G0015231.1 mouse_genomes_project 1 19094471 19634901 - Kcnq5 protein_coding retained_intron MGP_CASTEiJ_T0018356.1 MGP_CASTEiJ_G0015231.1 mouse_genomes_project 1 19139055 19239821 - MGP_CASTEiJ_P0018356 Kcnq5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0018357.1 MGP_CASTEiJ_G0015231.1 mouse_genomes_project 1 19216157 19516006 - Kcnq5 protein_coding processed_transcript MGP_CASTEiJ_T0020603.1 MGP_CASTEiJ_G0015661.1 mouse_genomes_project 1 91836636 91881808 - MGP_CASTEiJ_P0020603 Per2 protein_coding protein_coding MGP_CASTEiJ_T0020604.1 MGP_CASTEiJ_G0015661.1 mouse_genomes_project 1 91870266 91872405 - Per2 protein_coding processed_transcript MGP_CASTEiJ_T0022483.1 MGP_CASTEiJ_G0016041.1 mouse_genomes_project 1 168908239 168950782 - MGP_CASTEiJ_P0022483 Mpzl1 protein_coding protein_coding MGP_CASTEiJ_T0022484.1 MGP_CASTEiJ_G0016041.1 mouse_genomes_project 1 168909377 168920969 - MGP_CASTEiJ_P0022484 Mpzl1 protein_coding protein_coding MGP_CASTEiJ_T0022485.1 MGP_CASTEiJ_G0016041.1 mouse_genomes_project 1 168909416 168950902 - MGP_CASTEiJ_P0022485 Mpzl1 protein_coding protein_coding MGP_CASTEiJ_T0022486.1 MGP_CASTEiJ_G0016041.1 mouse_genomes_project 1 168909657 168950927 - MGP_CASTEiJ_P0022486 Mpzl1 protein_coding protein_coding MGP_CASTEiJ_T0022487.1 MGP_CASTEiJ_G0016041.1 mouse_genomes_project 1 168916996 168925808 - Mpzl1 protein_coding processed_transcript MGP_CASTEiJ_T0022488.1 MGP_CASTEiJ_G0016041.1 mouse_genomes_project 1 168919388 168920925 - Mpzl1 protein_coding retained_intron MGP_CASTEiJ_T0022489.1 MGP_CASTEiJ_G0016041.1 mouse_genomes_project 1 168920815 168929304 - Mpzl1 protein_coding processed_transcript MGP_CASTEiJ_T0022490.1 MGP_CASTEiJ_G0016041.1 mouse_genomes_project 1 168920883 168950831 - MGP_CASTEiJ_P0022490 Mpzl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022491.1 MGP_CASTEiJ_G0016041.1 mouse_genomes_project 1 168923620 168950474 - Mpzl1 protein_coding processed_transcript MGP_CASTEiJ_T0101914.1 MGP_CASTEiJ_G0038639.1 mouse_genomes_project 1 75152040 75152217 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011573.1 MGP_CASTEiJ_G0009736.1 mouse_genomes_project 1 5059563 5061024 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101498.1 MGP_CASTEiJ_G0038402.1 mouse_genomes_project 1 187018714 187019654 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101499.1 MGP_CASTEiJ_G0038402.1 mouse_genomes_project 1 187019142 187029041 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0005653.1 MGP_CASTEiJ_G0004752.1 mouse_genomes_project 1 80026360 80032162 + 2310015K22Rik lincRNA lincRNA MGP_CASTEiJ_T0011900.1 MGP_CASTEiJ_G0010063.1 mouse_genomes_project 1 129753289 129753597 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100284.1 MGP_CASTEiJ_G0037197.1 mouse_genomes_project 1 65527534 65527671 + Gm24729 snoRNA snoRNA MGP_CASTEiJ_T0000669.1 MGP_CASTEiJ_G0000613.1 mouse_genomes_project 1 162297615 162300466 + TEC TEC MGP_CASTEiJ_T0018058.1 MGP_CASTEiJ_G0015171.1 mouse_genomes_project 1 3641655 3679751 + MGP_CASTEiJ_P0018058 Fam150a protein_coding protein_coding MGP_CASTEiJ_T0020923.1 MGP_CASTEiJ_G0015735.1 mouse_genomes_project 1 110841107 110856990 + MGP_CASTEiJ_P0020923 Cdh7 protein_coding protein_coding MGP_CASTEiJ_T0020924.1 MGP_CASTEiJ_G0015735.1 mouse_genomes_project 1 110841386 111007645 + MGP_CASTEiJ_P0020924 Cdh7 protein_coding protein_coding MGP_CASTEiJ_T0020925.1 MGP_CASTEiJ_G0015735.1 mouse_genomes_project 1 110841657 110856531 + MGP_CASTEiJ_P0020925 Cdh7 protein_coding protein_coding MGP_CASTEiJ_T0020926.1 MGP_CASTEiJ_G0015735.1 mouse_genomes_project 1 110841682 110855589 + MGP_CASTEiJ_P0020926 Cdh7 protein_coding protein_coding MGP_CASTEiJ_T0020927.1 MGP_CASTEiJ_G0015735.1 mouse_genomes_project 1 110841905 111006693 + MGP_CASTEiJ_P0020927 Cdh7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020928.1 MGP_CASTEiJ_G0015735.1 mouse_genomes_project 1 110841957 110859655 + MGP_CASTEiJ_P0020928 Cdh7 protein_coding protein_coding MGP_CASTEiJ_T0020929.1 MGP_CASTEiJ_G0015735.1 mouse_genomes_project 1 110842413 111006499 + MGP_CASTEiJ_P0020929 Cdh7 protein_coding protein_coding MGP_CASTEiJ_T0020930.1 MGP_CASTEiJ_G0015735.1 mouse_genomes_project 1 110855188 111006687 + MGP_CASTEiJ_P0020930 Cdh7 protein_coding protein_coding MGP_CASTEiJ_T0020931.1 MGP_CASTEiJ_G0015735.1 mouse_genomes_project 1 110965505 111005556 + MGP_CASTEiJ_P0020931 Cdh7 protein_coding protein_coding MGP_CASTEiJ_T0021669.1 MGP_CASTEiJ_G0015889.1 mouse_genomes_project 1 137977759 138055910 - MGP_CASTEiJ_P0021669 Camsap2 protein_coding protein_coding MGP_CASTEiJ_T0021670.1 MGP_CASTEiJ_G0015889.1 mouse_genomes_project 1 137977890 137991347 - MGP_CASTEiJ_P0021670 Camsap2 protein_coding protein_coding MGP_CASTEiJ_T0021671.1 MGP_CASTEiJ_G0015889.1 mouse_genomes_project 1 137978794 138055504 - MGP_CASTEiJ_P0021671 Camsap2 protein_coding protein_coding MGP_CASTEiJ_T0021672.1 MGP_CASTEiJ_G0015889.1 mouse_genomes_project 1 137980237 138055504 - MGP_CASTEiJ_P0021672 Camsap2 protein_coding protein_coding MGP_CASTEiJ_T0021673.1 MGP_CASTEiJ_G0015889.1 mouse_genomes_project 1 138004497 138007412 - Camsap2 protein_coding processed_transcript MGP_CASTEiJ_T0021674.1 MGP_CASTEiJ_G0015889.1 mouse_genomes_project 1 138044098 138055896 - Camsap2 protein_coding processed_transcript MGP_CASTEiJ_T0021358.1 MGP_CASTEiJ_G0015824.1 mouse_genomes_project 1 133953260 133967210 - MGP_CASTEiJ_P0021358 Cntn2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021359.1 MGP_CASTEiJ_G0015824.1 mouse_genomes_project 1 133953260 133959480 - MGP_CASTEiJ_P0021359 Cntn2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021360.1 MGP_CASTEiJ_G0015824.1 mouse_genomes_project 1 133955617 133988662 - Cntn2 protein_coding retained_intron MGP_CASTEiJ_T0021361.1 MGP_CASTEiJ_G0015824.1 mouse_genomes_project 1 133955621 133988711 - MGP_CASTEiJ_P0021361 Cntn2 protein_coding protein_coding MGP_CASTEiJ_T0021362.1 MGP_CASTEiJ_G0015824.1 mouse_genomes_project 1 133955631 133988637 - Cntn2 protein_coding retained_intron MGP_CASTEiJ_T0021363.1 MGP_CASTEiJ_G0015824.1 mouse_genomes_project 1 133960843 133962835 - Cntn2 protein_coding retained_intron MGP_CASTEiJ_T0021364.1 MGP_CASTEiJ_G0015824.1 mouse_genomes_project 1 133973897 133978793 - MGP_CASTEiJ_P0021364 Cntn2 protein_coding protein_coding MGP_CASTEiJ_T0021365.1 MGP_CASTEiJ_G0015824.1 mouse_genomes_project 1 133978565 133989028 - MGP_CASTEiJ_P0021365 Cntn2 protein_coding protein_coding MGP_CASTEiJ_T0009255.1 MGP_CASTEiJ_G0007443.1 mouse_genomes_project 1 66908445 66908523 + Gm22548 miRNA miRNA MGP_CASTEiJ_T0005510.1 MGP_CASTEiJ_G0004647.1 mouse_genomes_project 1 18234133 18241531 + Gm28653 lincRNA lincRNA MGP_CASTEiJ_T0011565.1 MGP_CASTEiJ_G0009728.1 mouse_genomes_project 1 4328002 4328161 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011676.1 MGP_CASTEiJ_G0009839.1 mouse_genomes_project 1 43781072 43782012 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005899.1 MGP_CASTEiJ_G0004951.1 mouse_genomes_project 1 198517246 198520180 - 4631405K08Rik lincRNA lincRNA MGP_CASTEiJ_T0000385.1 MGP_CASTEiJ_G0000332.1 mouse_genomes_project 1 23523011 23527563 - TEC TEC MGP_CASTEiJ_T0020996.1 MGP_CASTEiJ_G0015746.1 mouse_genomes_project 1 120316292 120319117 + MGP_CASTEiJ_P0020996 Tmem185b protein_coding protein_coding MGP_CASTEiJ_T0020997.1 MGP_CASTEiJ_G0015746.1 mouse_genomes_project 1 120316305 120317362 + Tmem185b protein_coding processed_transcript MGP_CASTEiJ_T0021994.1 MGP_CASTEiJ_G0015950.1 mouse_genomes_project 1 156669571 156671890 + MGP_CASTEiJ_P0021994 Teddm1b protein_coding protein_coding MGP_CASTEiJ_T0016307.1 MGP_CASTEiJ_G0014427.1 mouse_genomes_project 1 137826106 137831091 - Gm15850 processed_transcript processed_transcript MGP_CASTEiJ_T0016308.1 MGP_CASTEiJ_G0014427.1 mouse_genomes_project 1 137827644 137831079 - Gm15850 processed_transcript processed_transcript MGP_CASTEiJ_T0016309.1 MGP_CASTEiJ_G0014427.1 mouse_genomes_project 1 137827644 137831079 - Gm15850 processed_transcript processed_transcript MGP_CASTEiJ_T0016310.1 MGP_CASTEiJ_G0014427.1 mouse_genomes_project 1 137827644 137831079 - Gm15850 processed_transcript processed_transcript MGP_CASTEiJ_T0002737.1 MGP_CASTEiJ_G0002599.1 mouse_genomes_project 1 75000740 75009099 - Gm15179 antisense antisense MGP_CASTEiJ_T0002738.1 MGP_CASTEiJ_G0002599.1 mouse_genomes_project 1 75000800 75002982 - Gm15179 antisense antisense MGP_CASTEiJ_T0018634.1 MGP_CASTEiJ_G0015285.1 mouse_genomes_project 1 34974308 35126573 - MGP_CASTEiJ_P0018634 Tmem131 protein_coding protein_coding MGP_CASTEiJ_T0018635.1 MGP_CASTEiJ_G0015285.1 mouse_genomes_project 1 34974311 35126868 - MGP_CASTEiJ_P0018635 Tmem131 protein_coding protein_coding MGP_CASTEiJ_T0018636.1 MGP_CASTEiJ_G0015285.1 mouse_genomes_project 1 34984433 35000131 - Tmem131 protein_coding retained_intron MGP_CASTEiJ_T0018637.1 MGP_CASTEiJ_G0015285.1 mouse_genomes_project 1 34991594 34993593 - Tmem131 protein_coding retained_intron MGP_CASTEiJ_T0018638.1 MGP_CASTEiJ_G0015285.1 mouse_genomes_project 1 34997197 35002312 - MGP_CASTEiJ_P0018638 Tmem131 protein_coding protein_coding MGP_CASTEiJ_T0018639.1 MGP_CASTEiJ_G0015285.1 mouse_genomes_project 1 34998968 35002703 - MGP_CASTEiJ_P0018639 Tmem131 protein_coding protein_coding MGP_CASTEiJ_T0018640.1 MGP_CASTEiJ_G0015285.1 mouse_genomes_project 1 35002210 35010568 - MGP_CASTEiJ_P0018640 Tmem131 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018641.1 MGP_CASTEiJ_G0015285.1 mouse_genomes_project 1 35028888 35130619 - MGP_CASTEiJ_P0018641 Tmem131 protein_coding protein_coding MGP_CASTEiJ_T0022766.1 MGP_CASTEiJ_G0016102.1 mouse_genomes_project 1 174892535 174906170 + MGP_CASTEiJ_P0022766 Pfdn2 protein_coding protein_coding MGP_CASTEiJ_T0022767.1 MGP_CASTEiJ_G0016102.1 mouse_genomes_project 1 174892595 174905318 + MGP_CASTEiJ_P0022767 Pfdn2 protein_coding protein_coding MGP_CASTEiJ_T0022768.1 MGP_CASTEiJ_G0016102.1 mouse_genomes_project 1 174903304 174904885 + Pfdn2 protein_coding processed_transcript MGP_CASTEiJ_T0016278.1 MGP_CASTEiJ_G0014419.1 mouse_genomes_project 1 86313849 86322468 + C130036L24Rik processed_transcript retained_intron MGP_CASTEiJ_T0016279.1 MGP_CASTEiJ_G0014419.1 mouse_genomes_project 1 86313859 86328192 + C130036L24Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016280.1 MGP_CASTEiJ_G0014419.1 mouse_genomes_project 1 86313863 86317053 + C130036L24Rik processed_transcript retained_intron MGP_CASTEiJ_T0021515.1 MGP_CASTEiJ_G0015858.1 mouse_genomes_project 1 136080489 136096099 + MGP_CASTEiJ_P0021515 Rabif protein_coding protein_coding MGP_CASTEiJ_T0000374.1 MGP_CASTEiJ_G0000321.1 mouse_genomes_project 1 23053763 23057197 - TEC TEC MGP_CASTEiJ_T0023276.1 MGP_CASTEiJ_G0016234.1 mouse_genomes_project 1 186616172 186617321 - MGP_CASTEiJ_P0023276 Vmn1r1 protein_coding protein_coding MGP_CASTEiJ_T0100341.1 MGP_CASTEiJ_G0037254.1 mouse_genomes_project 1 191361170 191361305 + Gm26169 snoRNA snoRNA MGP_CASTEiJ_T0099034.1 MGP_CASTEiJ_G0035952.1 mouse_genomes_project 1 41279718 41333106 + Gm20646 sense_overlapping sense_overlapping MGP_CASTEiJ_T0099035.1 MGP_CASTEiJ_G0035952.1 mouse_genomes_project 1 41279718 41329301 + Gm20646 sense_overlapping sense_overlapping MGP_CASTEiJ_T0020264.1 MGP_CASTEiJ_G0015585.1 mouse_genomes_project 1 85623222 85640437 - protein_coding processed_transcript MGP_CASTEiJ_T0020265.1 MGP_CASTEiJ_G0015585.1 mouse_genomes_project 1 85623222 85685610 - MGP_CASTEiJ_P0020265 protein_coding protein_coding MGP_CASTEiJ_T0020266.1 MGP_CASTEiJ_G0015585.1 mouse_genomes_project 1 85623824 85640485 - MGP_CASTEiJ_P0020266 protein_coding protein_coding MGP_CASTEiJ_T0020267.1 MGP_CASTEiJ_G0015585.1 mouse_genomes_project 1 85623827 85640437 - MGP_CASTEiJ_P0020267 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020268.1 MGP_CASTEiJ_G0015585.1 mouse_genomes_project 1 85624227 85640410 - protein_coding processed_transcript MGP_CASTEiJ_T0021931.1 MGP_CASTEiJ_G0015938.1 mouse_genomes_project 1 155547117 155617481 - MGP_CASTEiJ_P0021931 Smg7 protein_coding protein_coding MGP_CASTEiJ_T0021932.1 MGP_CASTEiJ_G0015938.1 mouse_genomes_project 1 155547118 155592271 - MGP_CASTEiJ_P0021932 Smg7 protein_coding protein_coding MGP_CASTEiJ_T0021933.1 MGP_CASTEiJ_G0015938.1 mouse_genomes_project 1 155549017 155617505 - MGP_CASTEiJ_P0021933 Smg7 protein_coding protein_coding MGP_CASTEiJ_T0021934.1 MGP_CASTEiJ_G0015938.1 mouse_genomes_project 1 155555413 155585262 - Smg7 protein_coding processed_transcript MGP_CASTEiJ_T0021935.1 MGP_CASTEiJ_G0015938.1 mouse_genomes_project 1 155555435 155559165 - Smg7 protein_coding processed_transcript MGP_CASTEiJ_T0021936.1 MGP_CASTEiJ_G0015938.1 mouse_genomes_project 1 155556072 155559080 - Smg7 protein_coding retained_intron MGP_CASTEiJ_T0010933.1 MGP_CASTEiJ_G0009121.1 mouse_genomes_project 1 196175349 196175457 + Gm24748 misc_RNA misc_RNA MGP_CASTEiJ_T0005661.1 MGP_CASTEiJ_G0004759.1 mouse_genomes_project 1 87149723 87153845 - Gm29374 lincRNA lincRNA MGP_CASTEiJ_T0011873.1 MGP_CASTEiJ_G0010036.1 mouse_genomes_project 1 119549720 119550039 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019162.1 MGP_CASTEiJ_G0015386.1 mouse_genomes_project 1 54021390 54033578 + MGP_CASTEiJ_P0019162 Mars2 protein_coding protein_coding MGP_CASTEiJ_T0005605.1 MGP_CASTEiJ_G0004717.1 mouse_genomes_project 1 62399524 62405784 - Gm11608 lincRNA lincRNA MGP_CASTEiJ_T0005606.1 MGP_CASTEiJ_G0004717.1 mouse_genomes_project 1 62399524 62405789 - Gm11608 lincRNA lincRNA MGP_CASTEiJ_T0005777.1 MGP_CASTEiJ_G0004857.1 mouse_genomes_project 1 154161443 154163136 - Gm28181 lincRNA lincRNA MGP_CASTEiJ_T0020274.1 MGP_CASTEiJ_G0015587.1 mouse_genomes_project 1 85812834 85829695 + MGP_CASTEiJ_P0020274 Itm2c protein_coding protein_coding MGP_CASTEiJ_T0020275.1 MGP_CASTEiJ_G0015587.1 mouse_genomes_project 1 85813172 85829378 + MGP_CASTEiJ_P0020275 Itm2c protein_coding protein_coding MGP_CASTEiJ_T0020276.1 MGP_CASTEiJ_G0015587.1 mouse_genomes_project 1 85827180 85828810 + Itm2c protein_coding retained_intron MGP_CASTEiJ_T0002655.1 MGP_CASTEiJ_G0002540.1 mouse_genomes_project 1 12174887 12200787 + Gm9947 antisense antisense MGP_CASTEiJ_T0002656.1 MGP_CASTEiJ_G0002540.1 mouse_genomes_project 1 12177399 12180325 + Gm9947 antisense antisense MGP_CASTEiJ_T0002822.1 MGP_CASTEiJ_G0002667.1 mouse_genomes_project 1 164192585 164193460 + Gm37362 antisense antisense MGP_CASTEiJ_T0100298.1 MGP_CASTEiJ_G0037211.1 mouse_genomes_project 1 102856244 102856343 - Gm23036 snoRNA snoRNA MGP_CASTEiJ_T0018589.1 MGP_CASTEiJ_G0015276.1 mouse_genomes_project 1 34629863 34667881 + MGP_CASTEiJ_P0018589 Cnnm4 protein_coding protein_coding MGP_CASTEiJ_T0018590.1 MGP_CASTEiJ_G0015276.1 mouse_genomes_project 1 34630171 34631543 + Cnnm4 protein_coding retained_intron MGP_CASTEiJ_T0020354.1 MGP_CASTEiJ_G0015607.1 mouse_genomes_project 1 87135748 87139489 + Akp3 protein_coding retained_intron MGP_CASTEiJ_T0020355.1 MGP_CASTEiJ_G0015607.1 mouse_genomes_project 1 87135779 87140247 + MGP_CASTEiJ_P0020355 Akp3 protein_coding protein_coding MGP_CASTEiJ_T0019634.1 MGP_CASTEiJ_G0015474.1 mouse_genomes_project 1 68896773 69066296 - MGP_CASTEiJ_P0019634 Ikzf2 protein_coding protein_coding MGP_CASTEiJ_T0019635.1 MGP_CASTEiJ_G0015474.1 mouse_genomes_project 1 68903563 69066358 - MGP_CASTEiJ_P0019635 Ikzf2 protein_coding protein_coding MGP_CASTEiJ_T0019636.1 MGP_CASTEiJ_G0015474.1 mouse_genomes_project 1 68904108 69068554 - MGP_CASTEiJ_P0019636 Ikzf2 protein_coding protein_coding MGP_CASTEiJ_T0019637.1 MGP_CASTEiJ_G0015474.1 mouse_genomes_project 1 68904294 69064639 - MGP_CASTEiJ_P0019637 Ikzf2 protein_coding protein_coding MGP_CASTEiJ_T0019638.1 MGP_CASTEiJ_G0015474.1 mouse_genomes_project 1 68904294 69064639 - MGP_CASTEiJ_P0019638 Ikzf2 protein_coding protein_coding MGP_CASTEiJ_T0019639.1 MGP_CASTEiJ_G0015474.1 mouse_genomes_project 1 68904294 69064639 - MGP_CASTEiJ_P0019639 Ikzf2 protein_coding protein_coding MGP_CASTEiJ_T0019640.1 MGP_CASTEiJ_G0015474.1 mouse_genomes_project 1 68948270 69065775 - MGP_CASTEiJ_P0019640 Ikzf2 protein_coding protein_coding MGP_CASTEiJ_T0019641.1 MGP_CASTEiJ_G0015474.1 mouse_genomes_project 1 69058280 69065023 - Ikzf2 protein_coding retained_intron MGP_CASTEiJ_T0019642.1 MGP_CASTEiJ_G0015474.1 mouse_genomes_project 1 69058281 69068449 - Ikzf2 protein_coding retained_intron MGP_CASTEiJ_T0101492.1 MGP_CASTEiJ_G0038399.1 mouse_genomes_project 1 160334363 160344088 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101493.1 MGP_CASTEiJ_G0038399.1 mouse_genomes_project 1 160334989 160336308 + transcribed_processed_pseudogene TEC MGP_CASTEiJ_T0002775.1 MGP_CASTEiJ_G0002629.1 mouse_genomes_project 1 131755621 131798226 + antisense antisense MGP_CASTEiJ_T0018517.1 MGP_CASTEiJ_G0015263.1 mouse_genomes_project 1 32609425 32617841 + MGP_CASTEiJ_P0018517 Cfc1 protein_coding protein_coding MGP_CASTEiJ_T0021219.1 MGP_CASTEiJ_G0015793.1 mouse_genomes_project 1 132256643 132260567 - MGP_CASTEiJ_P0021219 Il24 protein_coding protein_coding MGP_CASTEiJ_T0021220.1 MGP_CASTEiJ_G0015793.1 mouse_genomes_project 1 132256643 132262021 - MGP_CASTEiJ_P0021220 Il24 protein_coding protein_coding MGP_CASTEiJ_T0021221.1 MGP_CASTEiJ_G0015793.1 mouse_genomes_project 1 132257024 132261906 - MGP_CASTEiJ_P0021221 Il24 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021222.1 MGP_CASTEiJ_G0015793.1 mouse_genomes_project 1 132259357 132261980 - MGP_CASTEiJ_P0021222 Il24 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019037.1 MGP_CASTEiJ_G0015361.1 mouse_genomes_project 1 51366416 51387623 + MGP_CASTEiJ_P0019037 Nemp2 protein_coding protein_coding MGP_CASTEiJ_T0019038.1 MGP_CASTEiJ_G0015361.1 mouse_genomes_project 1 51366450 51387623 + MGP_CASTEiJ_P0019038 Nemp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019039.1 MGP_CASTEiJ_G0015361.1 mouse_genomes_project 1 51366460 51386334 + MGP_CASTEiJ_P0019039 Nemp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019040.1 MGP_CASTEiJ_G0015361.1 mouse_genomes_project 1 51366465 51386427 + Nemp2 protein_coding retained_intron MGP_CASTEiJ_T0019041.1 MGP_CASTEiJ_G0015361.1 mouse_genomes_project 1 51366510 51386400 + MGP_CASTEiJ_P0019041 Nemp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019042.1 MGP_CASTEiJ_G0015361.1 mouse_genomes_project 1 51377210 51387623 + Nemp2 protein_coding retained_intron MGP_CASTEiJ_T0019043.1 MGP_CASTEiJ_G0015361.1 mouse_genomes_project 1 51377674 51386354 + Nemp2 protein_coding processed_transcript MGP_CASTEiJ_T0019044.1 MGP_CASTEiJ_G0015361.1 mouse_genomes_project 1 51380883 51385719 + Nemp2 protein_coding retained_intron MGP_CASTEiJ_T0011705.1 MGP_CASTEiJ_G0009868.1 mouse_genomes_project 1 50101824 50102412 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099109.1 MGP_CASTEiJ_G0036022.1 mouse_genomes_project 1 119409440 119409570 + Gm23497 snRNA snRNA MGP_CASTEiJ_T0020915.1 MGP_CASTEiJ_G0015732.1 mouse_genomes_project 1 108197801 108220137 + MGP_CASTEiJ_P0020915 Serpinb2 protein_coding protein_coding MGP_CASTEiJ_T0020916.1 MGP_CASTEiJ_G0015732.1 mouse_genomes_project 1 108197875 108220131 + MGP_CASTEiJ_P0020916 Serpinb2 protein_coding protein_coding MGP_CASTEiJ_T0020917.1 MGP_CASTEiJ_G0015732.1 mouse_genomes_project 1 108219075 108226706 + MGP_CASTEiJ_P0020917 Serpinb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0101911.1 MGP_CASTEiJ_G0038636.1 mouse_genomes_project 1 64634954 64635634 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100332.1 MGP_CASTEiJ_G0037245.1 mouse_genomes_project 1 164200085 164200162 + Snord47 snoRNA snoRNA MGP_CASTEiJ_T0022545.1 MGP_CASTEiJ_G0016051.1 mouse_genomes_project 1 169699386 169726038 - MGP_CASTEiJ_P0022545 Pogk protein_coding protein_coding MGP_CASTEiJ_T0022546.1 MGP_CASTEiJ_G0016051.1 mouse_genomes_project 1 169701742 169725929 - MGP_CASTEiJ_P0022546 Pogk protein_coding unknown_likely_coding MGP_CASTEiJ_T0022547.1 MGP_CASTEiJ_G0016051.1 mouse_genomes_project 1 169707052 169725647 - MGP_CASTEiJ_P0022547 Pogk protein_coding protein_coding MGP_CASTEiJ_T0022548.1 MGP_CASTEiJ_G0016051.1 mouse_genomes_project 1 169708440 169726084 - MGP_CASTEiJ_P0022548 Pogk protein_coding protein_coding MGP_CASTEiJ_T0022549.1 MGP_CASTEiJ_G0016051.1 mouse_genomes_project 1 169710222 169726043 - MGP_CASTEiJ_P0022549 Pogk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022550.1 MGP_CASTEiJ_G0016051.1 mouse_genomes_project 1 169710928 169726119 - MGP_CASTEiJ_P0022550 Pogk protein_coding protein_coding MGP_CASTEiJ_T0022551.1 MGP_CASTEiJ_G0016051.1 mouse_genomes_project 1 169719579 169725545 - MGP_CASTEiJ_P0022551 Pogk protein_coding protein_coding MGP_CASTEiJ_T0101935.1 MGP_CASTEiJ_G0038660.1 mouse_genomes_project 1 136112157 136116309 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011910.1 MGP_CASTEiJ_G0010073.1 mouse_genomes_project 1 140063366 140063850 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019621.1 MGP_CASTEiJ_G0015471.1 mouse_genomes_project 1 66255989 66297577 - MGP_CASTEiJ_P0019621 Lancl1 protein_coding protein_coding MGP_CASTEiJ_T0019622.1 MGP_CASTEiJ_G0015471.1 mouse_genomes_project 1 66255989 66297570 - MGP_CASTEiJ_P0019622 Lancl1 protein_coding protein_coding MGP_CASTEiJ_T0019623.1 MGP_CASTEiJ_G0015471.1 mouse_genomes_project 1 66258867 66297539 - MGP_CASTEiJ_P0019623 Lancl1 protein_coding protein_coding MGP_CASTEiJ_T0019624.1 MGP_CASTEiJ_G0015471.1 mouse_genomes_project 1 66262520 66277826 - Lancl1 protein_coding processed_transcript MGP_CASTEiJ_T0019625.1 MGP_CASTEiJ_G0015471.1 mouse_genomes_project 1 66266818 66297539 - MGP_CASTEiJ_P0019625 Lancl1 protein_coding protein_coding MGP_CASTEiJ_T0019626.1 MGP_CASTEiJ_G0015471.1 mouse_genomes_project 1 66276376 66278980 - Lancl1 protein_coding retained_intron MGP_CASTEiJ_T0022916.1 MGP_CASTEiJ_G0016137.1 mouse_genomes_project 1 176270240 176279687 - MGP_CASTEiJ_P0022916 Slamf8 protein_coding protein_coding MGP_CASTEiJ_T0022917.1 MGP_CASTEiJ_G0016137.1 mouse_genomes_project 1 176278097 176279568 - Slamf8 protein_coding retained_intron MGP_CASTEiJ_T0019504.1 MGP_CASTEiJ_G0015446.1 mouse_genomes_project 1 62938269 62952418 - MGP_CASTEiJ_P0019504 4933402D24Rik protein_coding protein_coding MGP_CASTEiJ_T0020940.1 MGP_CASTEiJ_G0015739.1 mouse_genomes_project 1 118996495 119013721 - MGP_CASTEiJ_P0020940 Tsn protein_coding protein_coding MGP_CASTEiJ_T0020941.1 MGP_CASTEiJ_G0015739.1 mouse_genomes_project 1 119001417 119012548 - Tsn protein_coding retained_intron MGP_CASTEiJ_T0020942.1 MGP_CASTEiJ_G0015739.1 mouse_genomes_project 1 119002103 119013439 - MGP_CASTEiJ_P0020942 Tsn protein_coding unknown_likely_coding MGP_CASTEiJ_T0020943.1 MGP_CASTEiJ_G0015739.1 mouse_genomes_project 1 119002656 119012297 - Tsn protein_coding retained_intron MGP_CASTEiJ_T0020944.1 MGP_CASTEiJ_G0015739.1 mouse_genomes_project 1 119007013 119013767 - Tsn protein_coding processed_transcript MGP_CASTEiJ_T0020945.1 MGP_CASTEiJ_G0015739.1 mouse_genomes_project 1 119011017 119013541 - Tsn protein_coding retained_intron MGP_CASTEiJ_T0020946.1 MGP_CASTEiJ_G0015739.1 mouse_genomes_project 1 119012987 119014083 - Tsn protein_coding retained_intron MGP_CASTEiJ_T0012012.1 MGP_CASTEiJ_G0010175.1 mouse_genomes_project 1 186525878 186526295 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022787.1 MGP_CASTEiJ_G0016107.1 mouse_genomes_project 1 174969128 174969642 + Tstd1 protein_coding processed_transcript MGP_CASTEiJ_T0022788.1 MGP_CASTEiJ_G0016107.1 mouse_genomes_project 1 174969293 174970634 + MGP_CASTEiJ_P0022788 Tstd1 protein_coding protein_coding MGP_CASTEiJ_T0022789.1 MGP_CASTEiJ_G0016107.1 mouse_genomes_project 1 174969994 174970633 + Tstd1 protein_coding retained_intron MGP_CASTEiJ_T0000525.1 MGP_CASTEiJ_G0000471.1 mouse_genomes_project 1 89801604 89803993 + TEC TEC MGP_CASTEiJ_T0000377.1 MGP_CASTEiJ_G0000324.1 mouse_genomes_project 1 23101587 23104834 - TEC TEC MGP_CASTEiJ_T0018308.1 MGP_CASTEiJ_G0015216.1 mouse_genomes_project 1 15607014 15636932 - Crisp4 protein_coding retained_intron MGP_CASTEiJ_T0018309.1 MGP_CASTEiJ_G0015216.1 mouse_genomes_project 1 15607014 15636938 - MGP_CASTEiJ_P0018309 Crisp4 protein_coding protein_coding MGP_CASTEiJ_T0018310.1 MGP_CASTEiJ_G0015216.1 mouse_genomes_project 1 15607027 15630794 - MGP_CASTEiJ_P0018310 Crisp4 protein_coding protein_coding MGP_CASTEiJ_T0018311.1 MGP_CASTEiJ_G0015216.1 mouse_genomes_project 1 15607423 15636938 - MGP_CASTEiJ_P0018311 Crisp4 protein_coding protein_coding MGP_CASTEiJ_T0021784.1 MGP_CASTEiJ_G0015911.1 mouse_genomes_project 1 146130562 146163082 + MGP_CASTEiJ_P0021784 Uchl5 protein_coding protein_coding MGP_CASTEiJ_T0021785.1 MGP_CASTEiJ_G0015911.1 mouse_genomes_project 1 146130566 146137530 + Uchl5 protein_coding retained_intron MGP_CASTEiJ_T0021786.1 MGP_CASTEiJ_G0015911.1 mouse_genomes_project 1 146130571 146163243 + MGP_CASTEiJ_P0021786 Uchl5 protein_coding protein_coding MGP_CASTEiJ_T0021787.1 MGP_CASTEiJ_G0015911.1 mouse_genomes_project 1 146130595 146139610 + Uchl5 protein_coding retained_intron MGP_CASTEiJ_T0021788.1 MGP_CASTEiJ_G0015911.1 mouse_genomes_project 1 146130611 146154150 + MGP_CASTEiJ_P0021788 Uchl5 protein_coding protein_coding MGP_CASTEiJ_T0021789.1 MGP_CASTEiJ_G0015911.1 mouse_genomes_project 1 146136932 146148570 + Uchl5 protein_coding retained_intron MGP_CASTEiJ_T0021790.1 MGP_CASTEiJ_G0015911.1 mouse_genomes_project 1 146148508 146162718 + MGP_CASTEiJ_P0021790 Uchl5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0099068.1 MGP_CASTEiJ_G0035981.1 mouse_genomes_project 1 7334075 7334179 - Gm24674 snRNA snRNA MGP_CASTEiJ_T0000531.1 MGP_CASTEiJ_G0000477.1 mouse_genomes_project 1 92356349 92359643 + TEC TEC MGP_CASTEiJ_T0002667.1 MGP_CASTEiJ_G0002547.1 mouse_genomes_project 1 16614645 16663437 - Gm15825 antisense antisense MGP_CASTEiJ_T0019859.1 MGP_CASTEiJ_G0015517.1 mouse_genomes_project 1 74518497 74523952 + MGP_CASTEiJ_P0019859 Cdk5r2 protein_coding protein_coding MGP_CASTEiJ_T0019045.1 MGP_CASTEiJ_G0015362.1 mouse_genomes_project 1 51391626 51457464 - MGP_CASTEiJ_P0019045 Mfsd6 protein_coding protein_coding MGP_CASTEiJ_T0019046.1 MGP_CASTEiJ_G0015362.1 mouse_genomes_project 1 51391638 51457415 - MGP_CASTEiJ_P0019046 Mfsd6 protein_coding protein_coding MGP_CASTEiJ_T0019047.1 MGP_CASTEiJ_G0015362.1 mouse_genomes_project 1 51392777 51395605 - Mfsd6 protein_coding retained_intron MGP_CASTEiJ_T0019048.1 MGP_CASTEiJ_G0015362.1 mouse_genomes_project 1 51395311 51457464 - MGP_CASTEiJ_P0019048 Mfsd6 protein_coding protein_coding MGP_CASTEiJ_T0019049.1 MGP_CASTEiJ_G0015362.1 mouse_genomes_project 1 51396210 51404643 - Mfsd6 protein_coding processed_transcript MGP_CASTEiJ_T0019050.1 MGP_CASTEiJ_G0015362.1 mouse_genomes_project 1 51410898 51457360 - Mfsd6 protein_coding retained_intron MGP_CASTEiJ_T0011761.1 MGP_CASTEiJ_G0009924.1 mouse_genomes_project 1 64757770 64758548 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011659.1 MGP_CASTEiJ_G0009822.1 mouse_genomes_project 1 35695858 35697649 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019432.1 MGP_CASTEiJ_G0015432.1 mouse_genomes_project 1 59912808 59944272 + Ctla4 protein_coding processed_transcript MGP_CASTEiJ_T0019433.1 MGP_CASTEiJ_G0015432.1 mouse_genomes_project 1 59937883 59947380 + MGP_CASTEiJ_P0019433 Ctla4 protein_coding protein_coding MGP_CASTEiJ_T0019434.1 MGP_CASTEiJ_G0015432.1 mouse_genomes_project 1 59938029 59946316 + MGP_CASTEiJ_P0019434 Ctla4 protein_coding protein_coding MGP_CASTEiJ_T0100283.1 MGP_CASTEiJ_G0037196.1 mouse_genomes_project 1 62303904 62304036 + Snora41 snoRNA snoRNA MGP_CASTEiJ_T0005674.1 MGP_CASTEiJ_G0004771.1 mouse_genomes_project 1 90813513 90814623 - Gm28722 lincRNA lincRNA MGP_CASTEiJ_T0101949.1 MGP_CASTEiJ_G0038674.1 mouse_genomes_project 1 178024058 178024524 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100291.1 MGP_CASTEiJ_G0037204.1 mouse_genomes_project 1 86306314 86306394 - Gm24148 snoRNA snoRNA MGP_CASTEiJ_T0002883.1 MGP_CASTEiJ_G0002716.1 mouse_genomes_project 1 195069842 195070806 + Gm28172 antisense antisense MGP_CASTEiJ_T0019435.1 MGP_CASTEiJ_G0015433.1 mouse_genomes_project 1 60009150 60039934 + MGP_CASTEiJ_P0019435 Icos protein_coding unknown_likely_coding MGP_CASTEiJ_T0019436.1 MGP_CASTEiJ_G0015433.1 mouse_genomes_project 1 60015005 60035436 + MGP_CASTEiJ_P0019436 Icos protein_coding protein_coding MGP_CASTEiJ_T0009299.1 MGP_CASTEiJ_G0007487.1 mouse_genomes_project 1 165447754 165447864 + Mir199a-2 miRNA miRNA MGP_CASTEiJ_T0011807.1 MGP_CASTEiJ_G0009970.1 mouse_genomes_project 1 89211741 89212996 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100326.1 MGP_CASTEiJ_G0037239.1 mouse_genomes_project 1 164198060 164198143 + Gm22357 snoRNA snoRNA MGP_CASTEiJ_T0000617.1 MGP_CASTEiJ_G0000561.1 mouse_genomes_project 1 139795338 139799226 + TEC TEC MGP_CASTEiJ_T0023539.1 MGP_CASTEiJ_G0016290.1 mouse_genomes_project 1 196573009 196628690 + MGP_CASTEiJ_P0023539 Ints7 protein_coding protein_coding MGP_CASTEiJ_T0023540.1 MGP_CASTEiJ_G0016290.1 mouse_genomes_project 1 196573099 196612626 + Ints7 protein_coding retained_intron MGP_CASTEiJ_T0023541.1 MGP_CASTEiJ_G0016290.1 mouse_genomes_project 1 196573114 196626679 + MGP_CASTEiJ_P0023541 Ints7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023542.1 MGP_CASTEiJ_G0016290.1 mouse_genomes_project 1 196573134 196611242 + MGP_CASTEiJ_P0023542 Ints7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023543.1 MGP_CASTEiJ_G0016290.1 mouse_genomes_project 1 196573134 196627743 + MGP_CASTEiJ_P0023543 Ints7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023544.1 MGP_CASTEiJ_G0016290.1 mouse_genomes_project 1 196573148 196583269 + Ints7 protein_coding retained_intron MGP_CASTEiJ_T0002668.1 MGP_CASTEiJ_G0002548.1 mouse_genomes_project 1 17913716 17955768 + 4930486I03Rik antisense antisense MGP_CASTEiJ_T0002732.1 MGP_CASTEiJ_G0002594.1 mouse_genomes_project 1 73899425 73900131 + Gm28364 antisense antisense MGP_CASTEiJ_T0020628.1 MGP_CASTEiJ_G0015666.1 mouse_genomes_project 1 92882130 92917156 - MGP_CASTEiJ_P0020628 Ndufa10 protein_coding protein_coding MGP_CASTEiJ_T0020629.1 MGP_CASTEiJ_G0015666.1 mouse_genomes_project 1 92882421 92917056 - MGP_CASTEiJ_P0020629 Ndufa10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020630.1 MGP_CASTEiJ_G0015666.1 mouse_genomes_project 1 92882981 92904035 - Ndufa10 protein_coding retained_intron MGP_CASTEiJ_T0020631.1 MGP_CASTEiJ_G0015666.1 mouse_genomes_project 1 92895185 92906305 - Ndufa10 protein_coding processed_transcript MGP_CASTEiJ_T0020632.1 MGP_CASTEiJ_G0015666.1 mouse_genomes_project 1 92905536 92914166 - Ndufa10 protein_coding retained_intron MGP_CASTEiJ_T0020633.1 MGP_CASTEiJ_G0015666.1 mouse_genomes_project 1 92906418 92914366 - Ndufa10 protein_coding retained_intron MGP_CASTEiJ_T0020634.1 MGP_CASTEiJ_G0015666.1 mouse_genomes_project 1 92910724 92917046 - MGP_CASTEiJ_P0020634 Ndufa10 protein_coding protein_coding MGP_CASTEiJ_T0020635.1 MGP_CASTEiJ_G0015666.1 mouse_genomes_project 1 92916077 92917066 - Ndufa10 protein_coding retained_intron MGP_CASTEiJ_T0016251.1 MGP_CASTEiJ_G0014406.1 mouse_genomes_project 1 34720529 34722505 + D430040D24Rik processed_transcript retained_intron MGP_CASTEiJ_T0016252.1 MGP_CASTEiJ_G0014406.1 mouse_genomes_project 1 34721187 34728463 + D430040D24Rik processed_transcript antisense MGP_CASTEiJ_T0011732.1 MGP_CASTEiJ_G0009895.1 mouse_genomes_project 1 58613260 58613645 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099090.1 MGP_CASTEiJ_G0036003.1 mouse_genomes_project 1 62758895 62758998 - Gm22281 snRNA snRNA MGP_CASTEiJ_T0019704.1 MGP_CASTEiJ_G0015488.1 mouse_genomes_project 1 72251770 72254313 + MGP_CASTEiJ_P0019704 Rpl37a protein_coding protein_coding MGP_CASTEiJ_T0000711.1 MGP_CASTEiJ_G0000655.1 mouse_genomes_project 1 180739111 180740533 - TEC TEC MGP_CASTEiJ_T0005545.1 MGP_CASTEiJ_G0004677.1 mouse_genomes_project 1 39975826 39979120 - Gm28634 lincRNA lincRNA MGP_CASTEiJ_T0000336.1 MGP_CASTEiJ_G0000285.1 mouse_genomes_project 1 7291729 7293074 + TEC TEC MGP_CASTEiJ_T0009240.1 MGP_CASTEiJ_G0007428.1 mouse_genomes_project 1 37480000 37480097 - Mir6349 miRNA miRNA MGP_CASTEiJ_T0018783.1 MGP_CASTEiJ_G0015312.1 mouse_genomes_project 1 37947465 37987811 - MGP_CASTEiJ_P0018783 Creg2 protein_coding protein_coding MGP_CASTEiJ_T0000509.1 MGP_CASTEiJ_G0000455.1 mouse_genomes_project 1 84822446 84824486 - TEC TEC MGP_CASTEiJ_T0016241.1 MGP_CASTEiJ_G0014403.1 mouse_genomes_project 1 6846054 6924159 - 2610203C22Rik processed_transcript antisense MGP_CASTEiJ_T0016242.1 MGP_CASTEiJ_G0014403.1 mouse_genomes_project 1 6848713 6924204 - 2610203C22Rik processed_transcript retained_intron MGP_CASTEiJ_T0016243.1 MGP_CASTEiJ_G0014403.1 mouse_genomes_project 1 6889952 6924211 - 2610203C22Rik processed_transcript antisense MGP_CASTEiJ_T0016244.1 MGP_CASTEiJ_G0014403.1 mouse_genomes_project 1 6890557 6924242 - 2610203C22Rik processed_transcript antisense MGP_CASTEiJ_T0016245.1 MGP_CASTEiJ_G0014403.1 mouse_genomes_project 1 6892966 6924231 - 2610203C22Rik processed_transcript antisense MGP_CASTEiJ_T0022657.1 MGP_CASTEiJ_G0016083.1 mouse_genomes_project 1 174462600 174480350 - MGP_CASTEiJ_P0022657 Fcgr2b protein_coding protein_coding MGP_CASTEiJ_T0022658.1 MGP_CASTEiJ_G0016083.1 mouse_genomes_project 1 174464249 174480350 - MGP_CASTEiJ_P0022658 Fcgr2b protein_coding protein_coding MGP_CASTEiJ_T0022659.1 MGP_CASTEiJ_G0016083.1 mouse_genomes_project 1 174464426 174465324 - Fcgr2b protein_coding processed_transcript MGP_CASTEiJ_T0022660.1 MGP_CASTEiJ_G0016083.1 mouse_genomes_project 1 174464461 174480771 - MGP_CASTEiJ_P0022660 Fcgr2b protein_coding protein_coding MGP_CASTEiJ_T0022661.1 MGP_CASTEiJ_G0016083.1 mouse_genomes_project 1 174464685 174480350 - MGP_CASTEiJ_P0022661 Fcgr2b protein_coding protein_coding MGP_CASTEiJ_T0022662.1 MGP_CASTEiJ_G0016083.1 mouse_genomes_project 1 174467954 174480350 - Fcgr2b protein_coding retained_intron MGP_CASTEiJ_T0022663.1 MGP_CASTEiJ_G0016083.1 mouse_genomes_project 1 174472872 174480350 - Fcgr2b protein_coding retained_intron MGP_CASTEiJ_T0000621.1 MGP_CASTEiJ_G0000565.1 mouse_genomes_project 1 140145920 140146345 + TEC TEC MGP_CASTEiJ_T0011854.1 MGP_CASTEiJ_G0010017.1 mouse_genomes_project 1 111366659 111367481 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002847.1 MGP_CASTEiJ_G0002685.1 mouse_genomes_project 1 175048340 175052331 - B930036N10Rik antisense antisense MGP_CASTEiJ_T0002848.1 MGP_CASTEiJ_G0002685.1 mouse_genomes_project 1 175051022 175052331 - B930036N10Rik antisense antisense MGP_CASTEiJ_T0022380.1 MGP_CASTEiJ_G0016016.1 mouse_genomes_project 1 166507522 166575660 - MGP_CASTEiJ_P0022380 Prrx1 protein_coding protein_coding MGP_CASTEiJ_T0022381.1 MGP_CASTEiJ_G0016016.1 mouse_genomes_project 1 166507522 166575698 - MGP_CASTEiJ_P0022381 Prrx1 protein_coding protein_coding MGP_CASTEiJ_T0022382.1 MGP_CASTEiJ_G0016016.1 mouse_genomes_project 1 166511282 166551802 - Prrx1 protein_coding processed_transcript MGP_CASTEiJ_T0022383.1 MGP_CASTEiJ_G0016016.1 mouse_genomes_project 1 166516548 166575656 - MGP_CASTEiJ_P0022383 Prrx1 protein_coding protein_coding MGP_CASTEiJ_T0022384.1 MGP_CASTEiJ_G0016016.1 mouse_genomes_project 1 166545345 166575659 - Prrx1 protein_coding retained_intron MGP_CASTEiJ_T0005730.1 MGP_CASTEiJ_G0004816.1 mouse_genomes_project 1 122095644 122098895 + Gm29359 lincRNA lincRNA MGP_CASTEiJ_T0002792.1 MGP_CASTEiJ_G0002640.1 mouse_genomes_project 1 135458582 135468024 + Gm15851 antisense antisense MGP_CASTEiJ_T0005512.1 MGP_CASTEiJ_G0004649.1 mouse_genomes_project 1 18453438 18455279 - 6720483E21Rik lincRNA lincRNA MGP_CASTEiJ_T0101940.1 MGP_CASTEiJ_G0038665.1 mouse_genomes_project 1 175076765 175078634 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0018259.1 MGP_CASTEiJ_G0015207.1 mouse_genomes_project 1 13672932 13971068 - MGP_CASTEiJ_P0018259 Stau2 protein_coding protein_coding MGP_CASTEiJ_T0018260.1 MGP_CASTEiJ_G0015207.1 mouse_genomes_project 1 13673059 13970990 - MGP_CASTEiJ_P0018260 Stau2 protein_coding protein_coding MGP_CASTEiJ_T0018261.1 MGP_CASTEiJ_G0015207.1 mouse_genomes_project 1 13673062 13970990 - MGP_CASTEiJ_P0018261 Stau2 protein_coding protein_coding MGP_CASTEiJ_T0018262.1 MGP_CASTEiJ_G0015207.1 mouse_genomes_project 1 13673068 13971068 - MGP_CASTEiJ_P0018262 Stau2 protein_coding protein_coding MGP_CASTEiJ_T0018263.1 MGP_CASTEiJ_G0015207.1 mouse_genomes_project 1 13673074 13971833 - MGP_CASTEiJ_P0018263 Stau2 protein_coding protein_coding MGP_CASTEiJ_T0018264.1 MGP_CASTEiJ_G0015207.1 mouse_genomes_project 1 13792018 13970956 - MGP_CASTEiJ_P0018264 Stau2 protein_coding protein_coding MGP_CASTEiJ_T0018265.1 MGP_CASTEiJ_G0015207.1 mouse_genomes_project 1 13792808 13824623 - Stau2 protein_coding processed_transcript MGP_CASTEiJ_T0018266.1 MGP_CASTEiJ_G0015207.1 mouse_genomes_project 1 13792901 13971002 - MGP_CASTEiJ_P0018266 Stau2 protein_coding protein_coding MGP_CASTEiJ_T0018267.1 MGP_CASTEiJ_G0015207.1 mouse_genomes_project 1 13792909 13971015 - MGP_CASTEiJ_P0018267 Stau2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018268.1 MGP_CASTEiJ_G0015207.1 mouse_genomes_project 1 13794308 13932304 - MGP_CASTEiJ_P0018268 Stau2 protein_coding protein_coding MGP_CASTEiJ_T0018269.1 MGP_CASTEiJ_G0015207.1 mouse_genomes_project 1 13841321 13971032 - MGP_CASTEiJ_P0018269 Stau2 protein_coding protein_coding MGP_CASTEiJ_T0018270.1 MGP_CASTEiJ_G0015207.1 mouse_genomes_project 1 13895887 13971801 - MGP_CASTEiJ_P0018270 Stau2 protein_coding protein_coding MGP_CASTEiJ_T0018271.1 MGP_CASTEiJ_G0015207.1 mouse_genomes_project 1 13907139 13971022 - MGP_CASTEiJ_P0018271 Stau2 protein_coding protein_coding MGP_CASTEiJ_T0018272.1 MGP_CASTEiJ_G0015207.1 mouse_genomes_project 1 13907529 13971742 - MGP_CASTEiJ_P0018272 Stau2 protein_coding protein_coding MGP_CASTEiJ_T0018273.1 MGP_CASTEiJ_G0015207.1 mouse_genomes_project 1 13907638 13971741 - MGP_CASTEiJ_P0018273 Stau2 protein_coding protein_coding MGP_CASTEiJ_T0011789.1 MGP_CASTEiJ_G0009952.1 mouse_genomes_project 1 80816075 80816543 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000395.1 MGP_CASTEiJ_G0000342.1 mouse_genomes_project 1 30483052 30484597 + TEC TEC MGP_CASTEiJ_T0018184.1 MGP_CASTEiJ_G0015189.1 mouse_genomes_project 1 8782609 8977278 + MGP_CASTEiJ_P0018184 A830018L16Rik protein_coding protein_coding MGP_CASTEiJ_T0018185.1 MGP_CASTEiJ_G0015189.1 mouse_genomes_project 1 8782609 9309294 + MGP_CASTEiJ_P0018185 A830018L16Rik protein_coding protein_coding MGP_CASTEiJ_T0018186.1 MGP_CASTEiJ_G0015189.1 mouse_genomes_project 1 8782616 8904938 + A830018L16Rik protein_coding processed_transcript MGP_CASTEiJ_T0018187.1 MGP_CASTEiJ_G0015189.1 mouse_genomes_project 1 8782616 8882936 + A830018L16Rik protein_coding processed_transcript MGP_CASTEiJ_T0018188.1 MGP_CASTEiJ_G0015189.1 mouse_genomes_project 1 8782616 9270290 + MGP_CASTEiJ_P0018188 A830018L16Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018189.1 MGP_CASTEiJ_G0015189.1 mouse_genomes_project 1 8782773 8977088 + MGP_CASTEiJ_P0018189 A830018L16Rik protein_coding protein_coding MGP_CASTEiJ_T0018190.1 MGP_CASTEiJ_G0015189.1 mouse_genomes_project 1 8783013 9308790 + MGP_CASTEiJ_P0018190 A830018L16Rik protein_coding protein_coding MGP_CASTEiJ_T0018191.1 MGP_CASTEiJ_G0015189.1 mouse_genomes_project 1 8783013 9308790 + MGP_CASTEiJ_P0018191 A830018L16Rik protein_coding protein_coding MGP_CASTEiJ_T0018192.1 MGP_CASTEiJ_G0015189.1 mouse_genomes_project 1 8876112 8975445 + MGP_CASTEiJ_P0018192 A830018L16Rik protein_coding protein_coding MGP_CASTEiJ_T0018193.1 MGP_CASTEiJ_G0015189.1 mouse_genomes_project 1 8953819 8972082 + A830018L16Rik protein_coding processed_transcript MGP_CASTEiJ_T0000338.1 MGP_CASTEiJ_G0000287.1 mouse_genomes_project 1 7529638 7531360 - TEC TEC MGP_CASTEiJ_T0000736.1 MGP_CASTEiJ_G0000679.1 mouse_genomes_project 1 186866257 186867019 - TEC TEC MGP_CASTEiJ_T0000737.1 MGP_CASTEiJ_G0000679.1 mouse_genomes_project 1 186866616 186867018 - TEC TEC MGP_CASTEiJ_T0000629.1 MGP_CASTEiJ_G0000573.1 mouse_genomes_project 1 142503625 142506982 + TEC TEC MGP_CASTEiJ_T0000513.1 MGP_CASTEiJ_G0000459.1 mouse_genomes_project 1 86612268 86616402 + TEC TEC MGP_CASTEiJ_T0017991.1 MGP_CASTEiJ_G0015159.1 mouse_genomes_project 1 1229648 1484007 - MGP_CASTEiJ_P0017991 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0000579.1 MGP_CASTEiJ_G0000525.1 mouse_genomes_project 1 129342070 129344566 + TEC TEC MGP_CASTEiJ_T0000753.1 MGP_CASTEiJ_G0000695.1 mouse_genomes_project 1 194501597 194502482 - TEC TEC MGP_CASTEiJ_T0022990.1 MGP_CASTEiJ_G0016178.1 mouse_genomes_project 1 179008764 179444026 - MGP_CASTEiJ_P0022990 Rgs7 protein_coding protein_coding MGP_CASTEiJ_T0022991.1 MGP_CASTEiJ_G0016178.1 mouse_genomes_project 1 179008765 179443802 - MGP_CASTEiJ_P0022991 Rgs7 protein_coding protein_coding MGP_CASTEiJ_T0022992.1 MGP_CASTEiJ_G0016178.1 mouse_genomes_project 1 179008894 179443916 - MGP_CASTEiJ_P0022992 Rgs7 protein_coding protein_coding MGP_CASTEiJ_T0022993.1 MGP_CASTEiJ_G0016178.1 mouse_genomes_project 1 179009412 179037777 - MGP_CASTEiJ_P0022993 Rgs7 protein_coding protein_coding MGP_CASTEiJ_T0022994.1 MGP_CASTEiJ_G0016178.1 mouse_genomes_project 1 179009412 179037837 - MGP_CASTEiJ_P0022994 Rgs7 protein_coding protein_coding MGP_CASTEiJ_T0022995.1 MGP_CASTEiJ_G0016178.1 mouse_genomes_project 1 179009412 179442660 - MGP_CASTEiJ_P0022995 Rgs7 protein_coding protein_coding MGP_CASTEiJ_T0022996.1 MGP_CASTEiJ_G0016178.1 mouse_genomes_project 1 179009413 179031188 - MGP_CASTEiJ_P0022996 Rgs7 protein_coding protein_coding MGP_CASTEiJ_T0022997.1 MGP_CASTEiJ_G0016178.1 mouse_genomes_project 1 179027042 179030708 - Rgs7 protein_coding retained_intron MGP_CASTEiJ_T0021639.1 MGP_CASTEiJ_G0015882.1 mouse_genomes_project 1 137700325 137727838 + MGP_CASTEiJ_P0021639 Tmem9 protein_coding protein_coding MGP_CASTEiJ_T0021640.1 MGP_CASTEiJ_G0015882.1 mouse_genomes_project 1 137711791 137728913 + MGP_CASTEiJ_P0021640 Tmem9 protein_coding protein_coding MGP_CASTEiJ_T0021641.1 MGP_CASTEiJ_G0015882.1 mouse_genomes_project 1 137711886 137727863 + MGP_CASTEiJ_P0021641 Tmem9 protein_coding protein_coding MGP_CASTEiJ_T0021642.1 MGP_CASTEiJ_G0015882.1 mouse_genomes_project 1 137720569 137727970 + Tmem9 protein_coding retained_intron MGP_CASTEiJ_T0021643.1 MGP_CASTEiJ_G0015882.1 mouse_genomes_project 1 137726878 137728351 + Tmem9 protein_coding processed_transcript MGP_CASTEiJ_T0020269.1 MGP_CASTEiJ_G0015586.1 mouse_genomes_project 1 85701139 85763711 + MGP_CASTEiJ_P0020269 Cab39 protein_coding protein_coding MGP_CASTEiJ_T0020270.1 MGP_CASTEiJ_G0015586.1 mouse_genomes_project 1 85701239 85728751 + MGP_CASTEiJ_P0020270 Cab39 protein_coding protein_coding MGP_CASTEiJ_T0020271.1 MGP_CASTEiJ_G0015586.1 mouse_genomes_project 1 85702166 85748699 + MGP_CASTEiJ_P0020271 Cab39 protein_coding protein_coding MGP_CASTEiJ_T0020272.1 MGP_CASTEiJ_G0015586.1 mouse_genomes_project 1 85702209 85761739 + MGP_CASTEiJ_P0020272 Cab39 protein_coding protein_coding MGP_CASTEiJ_T0020273.1 MGP_CASTEiJ_G0015586.1 mouse_genomes_project 1 85754460 85757451 + Cab39 protein_coding retained_intron MGP_CASTEiJ_T0020030.1 MGP_CASTEiJ_G0015541.1 mouse_genomes_project 1 75085134 75110259 + MGP_CASTEiJ_P0020030 Asic4 protein_coding protein_coding MGP_CASTEiJ_T0020031.1 MGP_CASTEiJ_G0015541.1 mouse_genomes_project 1 75085397 75110262 + MGP_CASTEiJ_P0020031 Asic4 protein_coding protein_coding MGP_CASTEiJ_T0021131.1 MGP_CASTEiJ_G0015774.1 mouse_genomes_project 1 129078208 129142368 + MGP_CASTEiJ_P0021131 Rab3gap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021132.1 MGP_CASTEiJ_G0015774.1 mouse_genomes_project 1 129078249 129142360 + MGP_CASTEiJ_P0021132 Rab3gap1 protein_coding protein_coding MGP_CASTEiJ_T0021133.1 MGP_CASTEiJ_G0015774.1 mouse_genomes_project 1 129078278 129103332 + Rab3gap1 protein_coding retained_intron MGP_CASTEiJ_T0021134.1 MGP_CASTEiJ_G0015774.1 mouse_genomes_project 1 129120401 129123603 + Rab3gap1 protein_coding retained_intron MGP_CASTEiJ_T0021135.1 MGP_CASTEiJ_G0015774.1 mouse_genomes_project 1 129135278 129141405 + Rab3gap1 protein_coding processed_transcript MGP_CASTEiJ_T0002815.1 MGP_CASTEiJ_G0002660.1 mouse_genomes_project 1 158703480 158745080 + Gm37571 antisense antisense MGP_CASTEiJ_T0023123.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184217518 184440261 + MGP_CASTEiJ_P0023123 Cdc42bpa protein_coding protein_coding MGP_CASTEiJ_T0023124.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184217631 184442696 + MGP_CASTEiJ_P0023124 Cdc42bpa protein_coding protein_coding MGP_CASTEiJ_T0023125.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184217806 184382336 + MGP_CASTEiJ_P0023125 Cdc42bpa protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023126.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184218157 184439271 + MGP_CASTEiJ_P0023126 Cdc42bpa protein_coding protein_coding MGP_CASTEiJ_T0023127.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184218157 184439271 + MGP_CASTEiJ_P0023127 Cdc42bpa protein_coding protein_coding MGP_CASTEiJ_T0023128.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184218157 184439271 + MGP_CASTEiJ_P0023128 Cdc42bpa protein_coding protein_coding MGP_CASTEiJ_T0023129.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184232704 184305850 + Cdc42bpa protein_coding processed_transcript MGP_CASTEiJ_T0023130.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184252303 184301553 + Cdc42bpa protein_coding retained_intron MGP_CASTEiJ_T0023131.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184291843 184427533 + MGP_CASTEiJ_P0023131 Cdc42bpa protein_coding unknown_likely_coding MGP_CASTEiJ_T0023132.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184352297 184363873 + Cdc42bpa protein_coding retained_intron MGP_CASTEiJ_T0023133.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184370359 184439693 + MGP_CASTEiJ_P0023133 Cdc42bpa protein_coding protein_coding MGP_CASTEiJ_T0023134.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184376101 184389648 + Cdc42bpa protein_coding retained_intron MGP_CASTEiJ_T0023135.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184378088 184382611 + Cdc42bpa protein_coding retained_intron MGP_CASTEiJ_T0023136.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184378360 184426252 + MGP_CASTEiJ_P0023136 Cdc42bpa protein_coding protein_coding MGP_CASTEiJ_T0023137.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184381783 184412411 + MGP_CASTEiJ_P0023137 Cdc42bpa protein_coding protein_coding MGP_CASTEiJ_T0023138.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184381801 184386726 + Cdc42bpa protein_coding retained_intron MGP_CASTEiJ_T0023139.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184396333 184414235 + Cdc42bpa protein_coding processed_transcript MGP_CASTEiJ_T0023140.1 MGP_CASTEiJ_G0016208.1 mouse_genomes_project 1 184438095 184439399 + Cdc42bpa protein_coding retained_intron MGP_CASTEiJ_T0101716.1 MGP_CASTEiJ_G0038531.1 mouse_genomes_project 1 97931738 98040491 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0019082.1 MGP_CASTEiJ_G0015370.1 mouse_genomes_project 1 52036159 52061574 + MGP_CASTEiJ_P0019082 Gm28778 protein_coding protein_coding MGP_CASTEiJ_T0021038.1 MGP_CASTEiJ_G0015755.1 mouse_genomes_project 1 121026723 121112231 - MGP_CASTEiJ_P0021038 Steap3 protein_coding protein_coding MGP_CASTEiJ_T0021039.1 MGP_CASTEiJ_G0015755.1 mouse_genomes_project 1 121064013 121118429 - MGP_CASTEiJ_P0021039 Steap3 protein_coding protein_coding MGP_CASTEiJ_T0021040.1 MGP_CASTEiJ_G0015755.1 mouse_genomes_project 1 121065997 121112260 - MGP_CASTEiJ_P0021040 Steap3 protein_coding protein_coding MGP_CASTEiJ_T0021041.1 MGP_CASTEiJ_G0015755.1 mouse_genomes_project 1 121066202 121117760 - MGP_CASTEiJ_P0021041 Steap3 protein_coding protein_coding MGP_CASTEiJ_T0021042.1 MGP_CASTEiJ_G0015755.1 mouse_genomes_project 1 121066223 121120098 - MGP_CASTEiJ_P0021042 Steap3 protein_coding protein_coding MGP_CASTEiJ_T0021043.1 MGP_CASTEiJ_G0015755.1 mouse_genomes_project 1 121066941 121093568 - MGP_CASTEiJ_P0021043 Steap3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002701.1 MGP_CASTEiJ_G0002575.1 mouse_genomes_project 1 49905417 50023373 - 9330175M20Rik antisense antisense MGP_CASTEiJ_T0000740.1 MGP_CASTEiJ_G0000682.1 mouse_genomes_project 1 187410442 187413267 + TEC TEC MGP_CASTEiJ_T0101941.1 MGP_CASTEiJ_G0038666.1 mouse_genomes_project 1 176766395 176767254 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0016248.1 MGP_CASTEiJ_G0014405.1 mouse_genomes_project 1 32515829 32517227 - Gm28417 processed_transcript retained_intron MGP_CASTEiJ_T0016249.1 MGP_CASTEiJ_G0014405.1 mouse_genomes_project 1 32516956 32519951 - Gm28417 processed_transcript antisense MGP_CASTEiJ_T0016250.1 MGP_CASTEiJ_G0014405.1 mouse_genomes_project 1 32518327 32519915 - Gm28417 processed_transcript antisense MGP_CASTEiJ_T0018072.1 MGP_CASTEiJ_G0015173.1 mouse_genomes_project 1 4404602 4509872 + MGP_CASTEiJ_P0018072 Pcmtd1 protein_coding protein_coding MGP_CASTEiJ_T0018073.1 MGP_CASTEiJ_G0015173.1 mouse_genomes_project 1 4404612 4505839 + MGP_CASTEiJ_P0018073 Pcmtd1 protein_coding protein_coding MGP_CASTEiJ_T0018074.1 MGP_CASTEiJ_G0015173.1 mouse_genomes_project 1 4404786 4497199 + Pcmtd1 protein_coding processed_transcript MGP_CASTEiJ_T0018075.1 MGP_CASTEiJ_G0015173.1 mouse_genomes_project 1 4404848 4508358 + Pcmtd1 protein_coding processed_transcript MGP_CASTEiJ_T0018076.1 MGP_CASTEiJ_G0015173.1 mouse_genomes_project 1 4482425 4506316 + MGP_CASTEiJ_P0018076 Pcmtd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018077.1 MGP_CASTEiJ_G0015173.1 mouse_genomes_project 1 4491206 4499672 + Pcmtd1 protein_coding retained_intron MGP_CASTEiJ_T0018078.1 MGP_CASTEiJ_G0015173.1 mouse_genomes_project 1 4496383 4508854 + Pcmtd1 protein_coding retained_intron MGP_CASTEiJ_T0018079.1 MGP_CASTEiJ_G0015173.1 mouse_genomes_project 1 4496852 4508890 + Pcmtd1 protein_coding retained_intron MGP_CASTEiJ_T0021743.1 MGP_CASTEiJ_G0015902.1 mouse_genomes_project 1 141375007 141415586 + MGP_CASTEiJ_P0021743 Aspm protein_coding protein_coding MGP_CASTEiJ_T0021744.1 MGP_CASTEiJ_G0015902.1 mouse_genomes_project 1 141375008 141394768 + Aspm protein_coding retained_intron MGP_CASTEiJ_T0021745.1 MGP_CASTEiJ_G0015902.1 mouse_genomes_project 1 141375010 141415589 + MGP_CASTEiJ_P0021745 Aspm protein_coding protein_coding MGP_CASTEiJ_T0021746.1 MGP_CASTEiJ_G0015902.1 mouse_genomes_project 1 141375054 141377367 + Aspm protein_coding retained_intron MGP_CASTEiJ_T0021747.1 MGP_CASTEiJ_G0015902.1 mouse_genomes_project 1 141375144 141415399 + MGP_CASTEiJ_P0021747 Aspm protein_coding unknown_likely_coding MGP_CASTEiJ_T0021748.1 MGP_CASTEiJ_G0015902.1 mouse_genomes_project 1 141405075 141408893 + Aspm protein_coding processed_transcript MGP_CASTEiJ_T0020471.1 MGP_CASTEiJ_G0015628.1 mouse_genomes_project 1 88190951 88341680 + MGP_CASTEiJ_P0020471 protein_coding protein_coding MGP_CASTEiJ_T0020478.1 MGP_CASTEiJ_G0015628.1 mouse_genomes_project 1 88266876 88334465 + MGP_CASTEiJ_P0020478 protein_coding protein_coding MGP_CASTEiJ_T0020479.1 MGP_CASTEiJ_G0015628.1 mouse_genomes_project 1 88266878 88341680 + MGP_CASTEiJ_P0020479 protein_coding protein_coding MGP_CASTEiJ_T0020480.1 MGP_CASTEiJ_G0015628.1 mouse_genomes_project 1 88266938 88338602 + MGP_CASTEiJ_P0020480 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000487.1 MGP_CASTEiJ_G0000433.1 mouse_genomes_project 1 76853849 76857596 - TEC TEC MGP_CASTEiJ_T0005611.1 MGP_CASTEiJ_G0004722.1 mouse_genomes_project 1 63835966 63838785 + Gm29152 lincRNA lincRNA MGP_CASTEiJ_T0002778.1 MGP_CASTEiJ_G0002632.1 mouse_genomes_project 1 132181439 132195462 - Gm15848 antisense antisense MGP_CASTEiJ_T0002779.1 MGP_CASTEiJ_G0002632.1 mouse_genomes_project 1 132181665 132192051 - Gm15848 antisense antisense MGP_CASTEiJ_T0002780.1 MGP_CASTEiJ_G0002632.1 mouse_genomes_project 1 132188762 132192081 - Gm15848 antisense antisense MGP_CASTEiJ_T0022294.1 MGP_CASTEiJ_G0015999.1 mouse_genomes_project 1 164694993 164705600 + MGP_CASTEiJ_P0022294 Tnfsf18 protein_coding protein_coding MGP_CASTEiJ_T0022748.1 MGP_CASTEiJ_G0016100.1 mouse_genomes_project 1 174875043 174888055 + MGP_CASTEiJ_P0022748 Dedd protein_coding protein_coding MGP_CASTEiJ_T0022749.1 MGP_CASTEiJ_G0016100.1 mouse_genomes_project 1 174875295 174888049 + MGP_CASTEiJ_P0022749 Dedd protein_coding protein_coding MGP_CASTEiJ_T0022750.1 MGP_CASTEiJ_G0016100.1 mouse_genomes_project 1 174875304 174887408 + MGP_CASTEiJ_P0022750 Dedd protein_coding protein_coding MGP_CASTEiJ_T0022751.1 MGP_CASTEiJ_G0016100.1 mouse_genomes_project 1 174875462 174886022 + MGP_CASTEiJ_P0022751 Dedd protein_coding protein_coding MGP_CASTEiJ_T0022752.1 MGP_CASTEiJ_G0016100.1 mouse_genomes_project 1 174875503 174886676 + MGP_CASTEiJ_P0022752 Dedd protein_coding protein_coding MGP_CASTEiJ_T0022753.1 MGP_CASTEiJ_G0016100.1 mouse_genomes_project 1 174875855 174884137 + MGP_CASTEiJ_P0022753 Dedd protein_coding protein_coding MGP_CASTEiJ_T0022754.1 MGP_CASTEiJ_G0016100.1 mouse_genomes_project 1 174876124 174884066 + MGP_CASTEiJ_P0022754 Dedd protein_coding protein_coding MGP_CASTEiJ_T0022755.1 MGP_CASTEiJ_G0016100.1 mouse_genomes_project 1 174877193 174887342 + MGP_CASTEiJ_P0022755 Dedd protein_coding protein_coding MGP_CASTEiJ_T0022756.1 MGP_CASTEiJ_G0016100.1 mouse_genomes_project 1 174882535 174885859 + Dedd protein_coding retained_intron MGP_CASTEiJ_T0022757.1 MGP_CASTEiJ_G0016100.1 mouse_genomes_project 1 174883710 174885952 + MGP_CASTEiJ_P0022757 Dedd protein_coding protein_coding MGP_CASTEiJ_T0018518.1 MGP_CASTEiJ_G0015264.1 mouse_genomes_project 1 32630317 32637538 - MGP_CASTEiJ_P0018518 protein_coding protein_coding MGP_CASTEiJ_T0002747.1 MGP_CASTEiJ_G0002608.1 mouse_genomes_project 1 87898517 87899469 - Gm19582 antisense antisense MGP_CASTEiJ_T0098806.1 MGP_CASTEiJ_G0035736.1 mouse_genomes_project 1 187922776 187925662 + sense_intronic sense_intronic MGP_CASTEiJ_T0005828.1 MGP_CASTEiJ_G0004896.1 mouse_genomes_project 1 173636542 173637683 + Gm37748 lincRNA lincRNA MGP_CASTEiJ_T0100282.1 MGP_CASTEiJ_G0037195.1 mouse_genomes_project 1 62303005 62303040 + Gm26457 snoRNA snoRNA MGP_CASTEiJ_T0098439.1 MGP_CASTEiJ_G0035370.1 mouse_genomes_project 1 157131578 157131698 - n-R5s220 rRNA rRNA MGP_CASTEiJ_T0100248.1 MGP_CASTEiJ_G0037161.1 mouse_genomes_project 1 8259283 8259374 + Gm22963 snoRNA snoRNA MGP_CASTEiJ_T0011572.1 MGP_CASTEiJ_G0009735.1 mouse_genomes_project 1 5001376 5002248 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000445.1 MGP_CASTEiJ_G0000391.1 mouse_genomes_project 1 58367431 58369113 - TEC TEC MGP_CASTEiJ_T0012003.1 MGP_CASTEiJ_G0010166.1 mouse_genomes_project 1 181843284 181843894 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011777.1 MGP_CASTEiJ_G0009940.1 mouse_genomes_project 1 73104675 73105671 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005726.1 MGP_CASTEiJ_G0004815.1 mouse_genomes_project 1 121952785 121987085 + Celrr lincRNA lincRNA MGP_CASTEiJ_T0005727.1 MGP_CASTEiJ_G0004815.1 mouse_genomes_project 1 121952851 121983858 + Celrr lincRNA lincRNA MGP_CASTEiJ_T0005728.1 MGP_CASTEiJ_G0004815.1 mouse_genomes_project 1 121952854 122052332 + Celrr lincRNA lincRNA MGP_CASTEiJ_T0005729.1 MGP_CASTEiJ_G0004815.1 mouse_genomes_project 1 121952909 121954314 + Celrr lincRNA lincRNA MGP_CASTEiJ_T0005596.1 MGP_CASTEiJ_G0004710.1 mouse_genomes_project 1 60360372 60366194 + Gm11587 lincRNA lincRNA MGP_CASTEiJ_T0000650.1 MGP_CASTEiJ_G0000594.1 mouse_genomes_project 1 156206250 156207070 + TEC TEC MGP_CASTEiJ_T0100260.1 MGP_CASTEiJ_G0037173.1 mouse_genomes_project 1 22302070 22302207 - Gm26418 snoRNA snoRNA MGP_CASTEiJ_T0019601.1 MGP_CASTEiJ_G0015467.1 mouse_genomes_project 1 65923981 65944018 + MGP_CASTEiJ_P0019601 Rpe protein_coding protein_coding MGP_CASTEiJ_T0019602.1 MGP_CASTEiJ_G0015467.1 mouse_genomes_project 1 65923981 65937324 + MGP_CASTEiJ_P0019602 Rpe protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019603.1 MGP_CASTEiJ_G0015467.1 mouse_genomes_project 1 65923981 65944018 + MGP_CASTEiJ_P0019603 Rpe protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019604.1 MGP_CASTEiJ_G0015467.1 mouse_genomes_project 1 65923981 65944018 + MGP_CASTEiJ_P0019604 Rpe protein_coding protein_coding MGP_CASTEiJ_T0019605.1 MGP_CASTEiJ_G0015467.1 mouse_genomes_project 1 65924057 65939781 + MGP_CASTEiJ_P0019605 Rpe protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011983.1 MGP_CASTEiJ_G0010146.1 mouse_genomes_project 1 170081039 170082635 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011582.1 MGP_CASTEiJ_G0009745.1 mouse_genomes_project 1 7109114 7109471 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005725.1 MGP_CASTEiJ_G0004814.1 mouse_genomes_project 1 121721895 121723231 + Gm29347 lincRNA lincRNA MGP_CASTEiJ_T0002826.1 MGP_CASTEiJ_G0002670.1 mouse_genomes_project 1 165186534 165247474 + Gm38304 antisense antisense MGP_CASTEiJ_T0000723.1 MGP_CASTEiJ_G0000666.1 mouse_genomes_project 1 182499664 182501537 + TEC TEC MGP_CASTEiJ_T0099146.1 MGP_CASTEiJ_G0036059.1 mouse_genomes_project 1 189123200 189123298 - Gm23349 snRNA snRNA MGP_CASTEiJ_T0009245.1 MGP_CASTEiJ_G0007433.1 mouse_genomes_project 1 52236937 52237062 - Gm25240 miRNA miRNA MGP_CASTEiJ_T0019284.1 MGP_CASTEiJ_G0015409.1 mouse_genomes_project 1 57570089 57599592 + MGP_CASTEiJ_P0019284 Cflar protein_coding protein_coding MGP_CASTEiJ_T0019285.1 MGP_CASTEiJ_G0015409.1 mouse_genomes_project 1 57570091 57570682 + Cflar protein_coding processed_transcript MGP_CASTEiJ_T0019286.1 MGP_CASTEiJ_G0015409.1 mouse_genomes_project 1 57570097 57581720 + Cflar protein_coding processed_transcript MGP_CASTEiJ_T0019287.1 MGP_CASTEiJ_G0015409.1 mouse_genomes_project 1 57570366 57617945 + Cflar protein_coding processed_transcript MGP_CASTEiJ_T0019288.1 MGP_CASTEiJ_G0015409.1 mouse_genomes_project 1 57570366 57570685 + Cflar protein_coding processed_transcript MGP_CASTEiJ_T0019289.1 MGP_CASTEiJ_G0015409.1 mouse_genomes_project 1 57570366 57593138 + Cflar protein_coding processed_transcript MGP_CASTEiJ_T0019290.1 MGP_CASTEiJ_G0015409.1 mouse_genomes_project 1 57570366 57617590 + MGP_CASTEiJ_P0019290 Cflar protein_coding protein_coding MGP_CASTEiJ_T0019291.1 MGP_CASTEiJ_G0015409.1 mouse_genomes_project 1 57570681 57574439 + Cflar protein_coding retained_intron MGP_CASTEiJ_T0019292.1 MGP_CASTEiJ_G0015409.1 mouse_genomes_project 1 57586607 57622518 + MGP_CASTEiJ_P0019292 Cflar protein_coding protein_coding MGP_CASTEiJ_T0019293.1 MGP_CASTEiJ_G0015409.1 mouse_genomes_project 1 57586885 57622513 + MGP_CASTEiJ_P0019293 Cflar protein_coding protein_coding MGP_CASTEiJ_T0019294.1 MGP_CASTEiJ_G0015409.1 mouse_genomes_project 1 57592535 57616065 + Cflar protein_coding processed_transcript MGP_CASTEiJ_T0018702.1 MGP_CASTEiJ_G0015295.1 mouse_genomes_project 1 36093783 36110128 - MGP_CASTEiJ_P0018702 Mitd1 protein_coding protein_coding MGP_CASTEiJ_T0018703.1 MGP_CASTEiJ_G0015295.1 mouse_genomes_project 1 36097870 36110132 - MGP_CASTEiJ_P0018703 Mitd1 protein_coding protein_coding MGP_CASTEiJ_T0018704.1 MGP_CASTEiJ_G0015295.1 mouse_genomes_project 1 36097872 36099101 - Mitd1 protein_coding processed_transcript MGP_CASTEiJ_T0018705.1 MGP_CASTEiJ_G0015295.1 mouse_genomes_project 1 36097970 36100851 - Mitd1 protein_coding processed_transcript MGP_CASTEiJ_T0018706.1 MGP_CASTEiJ_G0015295.1 mouse_genomes_project 1 36100911 36109997 - Mitd1 protein_coding retained_intron MGP_CASTEiJ_T0021545.1 MGP_CASTEiJ_G0015864.1 mouse_genomes_project 1 136614570 136740515 - MGP_CASTEiJ_P0021545 Lgr6 protein_coding protein_coding MGP_CASTEiJ_T0021546.1 MGP_CASTEiJ_G0015864.1 mouse_genomes_project 1 136614578 136740789 - MGP_CASTEiJ_P0021546 Lgr6 protein_coding protein_coding MGP_CASTEiJ_T0021547.1 MGP_CASTEiJ_G0015864.1 mouse_genomes_project 1 136618128 136740584 - MGP_CASTEiJ_P0021547 Lgr6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0021548.1 MGP_CASTEiJ_G0015864.1 mouse_genomes_project 1 136635149 136653996 - Lgr6 protein_coding processed_transcript MGP_CASTEiJ_T0018591.1 MGP_CASTEiJ_G0015277.1 mouse_genomes_project 1 34674064 34690399 + MGP_CASTEiJ_P0018591 Cnnm3 protein_coding protein_coding MGP_CASTEiJ_T0018592.1 MGP_CASTEiJ_G0015277.1 mouse_genomes_project 1 34674064 34690399 + MGP_CASTEiJ_P0018592 Cnnm3 protein_coding protein_coding MGP_CASTEiJ_T0018593.1 MGP_CASTEiJ_G0015277.1 mouse_genomes_project 1 34675294 34682618 + Cnnm3 protein_coding retained_intron MGP_CASTEiJ_T0018594.1 MGP_CASTEiJ_G0015277.1 mouse_genomes_project 1 34680743 34681753 + Cnnm3 protein_coding retained_intron MGP_CASTEiJ_T0018595.1 MGP_CASTEiJ_G0015277.1 mouse_genomes_project 1 34682943 34687783 + Cnnm3 protein_coding retained_intron MGP_CASTEiJ_T0100273.1 MGP_CASTEiJ_G0037186.1 mouse_genomes_project 1 56272084 56272214 - Gm22371 snoRNA snoRNA MGP_CASTEiJ_T0018912.1 MGP_CASTEiJ_G0015340.1 mouse_genomes_project 1 42808060 42815669 + MGP_CASTEiJ_P0018912 Bivm protein_coding protein_coding MGP_CASTEiJ_T0018913.1 MGP_CASTEiJ_G0015340.1 mouse_genomes_project 1 42808103 42815433 + Bivm protein_coding processed_transcript MGP_CASTEiJ_T0018914.1 MGP_CASTEiJ_G0015340.1 mouse_genomes_project 1 42808264 42834489 + MGP_CASTEiJ_P0018914 Bivm protein_coding protein_coding MGP_CASTEiJ_T0018915.1 MGP_CASTEiJ_G0015340.1 mouse_genomes_project 1 42808624 42815450 + Bivm protein_coding processed_transcript MGP_CASTEiJ_T0018916.1 MGP_CASTEiJ_G0015340.1 mouse_genomes_project 1 42809076 42834821 + MGP_CASTEiJ_P0018916 Bivm protein_coding protein_coding MGP_CASTEiJ_T0018917.1 MGP_CASTEiJ_G0015340.1 mouse_genomes_project 1 42809087 42815510 + MGP_CASTEiJ_P0018917 Bivm protein_coding protein_coding MGP_CASTEiJ_T0000383.1 MGP_CASTEiJ_G0000330.1 mouse_genomes_project 1 23479986 23483184 - TEC TEC MGP_CASTEiJ_T0005734.1 MGP_CASTEiJ_G0004820.1 mouse_genomes_project 1 126272251 126278077 - 1700121L03Rik lincRNA lincRNA MGP_CASTEiJ_T0005550.1 MGP_CASTEiJ_G0004680.1 mouse_genomes_project 1 40785396 40785860 - Gm29664 lincRNA lincRNA MGP_CASTEiJ_T0021914.1 MGP_CASTEiJ_G0015933.1 mouse_genomes_project 1 155091882 155198415 + MGP_CASTEiJ_P0021914 Colgalt2 protein_coding protein_coding MGP_CASTEiJ_T0021915.1 MGP_CASTEiJ_G0015933.1 mouse_genomes_project 1 155091882 155197541 + MGP_CASTEiJ_P0021915 Colgalt2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0100312.1 MGP_CASTEiJ_G0037225.1 mouse_genomes_project 1 135125523 135125656 + Gm23939 snoRNA snoRNA MGP_CASTEiJ_T0002759.1 MGP_CASTEiJ_G0002620.1 mouse_genomes_project 1 97468336 97509388 + Panct2 antisense antisense MGP_CASTEiJ_T0002760.1 MGP_CASTEiJ_G0002620.1 mouse_genomes_project 1 97469431 97478433 + Panct2 antisense antisense MGP_CASTEiJ_T0002761.1 MGP_CASTEiJ_G0002620.1 mouse_genomes_project 1 97469443 97475099 + Panct2 antisense antisense MGP_CASTEiJ_T0005511.1 MGP_CASTEiJ_G0004648.1 mouse_genomes_project 1 18398099 18402623 + Gm28065 lincRNA lincRNA MGP_CASTEiJ_T0023241.1 MGP_CASTEiJ_G0016228.1 mouse_genomes_project 1 185753064 185869053 + MGP_CASTEiJ_P0023241 Cnih3 protein_coding protein_coding MGP_CASTEiJ_T0023242.1 MGP_CASTEiJ_G0016228.1 mouse_genomes_project 1 185753066 185869781 + MGP_CASTEiJ_P0023242 Cnih3 protein_coding protein_coding MGP_CASTEiJ_T0023243.1 MGP_CASTEiJ_G0016228.1 mouse_genomes_project 1 185753634 185868428 + MGP_CASTEiJ_P0023243 Cnih3 protein_coding protein_coding MGP_CASTEiJ_T0016315.1 MGP_CASTEiJ_G0014430.1 mouse_genomes_project 1 140852871 140857741 + Gm37423 processed_transcript retained_intron MGP_CASTEiJ_T0018327.1 MGP_CASTEiJ_G0015223.1 mouse_genomes_project 1 18331801 18338979 - MGP_CASTEiJ_P0018327 Il17f protein_coding protein_coding MGP_CASTEiJ_T0018328.1 MGP_CASTEiJ_G0015223.1 mouse_genomes_project 1 18332334 18334222 - Il17f protein_coding retained_intron MGP_CASTEiJ_T0018329.1 MGP_CASTEiJ_G0015223.1 mouse_genomes_project 1 18332386 18339368 - MGP_CASTEiJ_P0018329 Il17f protein_coding protein_coding MGP_CASTEiJ_T0000359.1 MGP_CASTEiJ_G0000308.1 mouse_genomes_project 1 14081045 14085190 + TEC TEC MGP_CASTEiJ_T0019456.1 MGP_CASTEiJ_G0015438.1 mouse_genomes_project 1 62265925 62267289 - Ndufs1 protein_coding retained_intron MGP_CASTEiJ_T0019457.1 MGP_CASTEiJ_G0015438.1 mouse_genomes_project 1 62265925 62301142 - MGP_CASTEiJ_P0019457 Ndufs1 protein_coding protein_coding MGP_CASTEiJ_T0019458.1 MGP_CASTEiJ_G0015438.1 mouse_genomes_project 1 62265933 62270065 - Ndufs1 protein_coding retained_intron MGP_CASTEiJ_T0019459.1 MGP_CASTEiJ_G0015438.1 mouse_genomes_project 1 62266018 62269740 - MGP_CASTEiJ_P0019459 Ndufs1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019460.1 MGP_CASTEiJ_G0015438.1 mouse_genomes_project 1 62266064 62301052 - MGP_CASTEiJ_P0019460 Ndufs1 protein_coding protein_coding MGP_CASTEiJ_T0019461.1 MGP_CASTEiJ_G0015438.1 mouse_genomes_project 1 62272723 62300983 - MGP_CASTEiJ_P0019461 Ndufs1 protein_coding protein_coding MGP_CASTEiJ_T0019462.1 MGP_CASTEiJ_G0015438.1 mouse_genomes_project 1 62272862 62275419 - Ndufs1 protein_coding retained_intron MGP_CASTEiJ_T0019463.1 MGP_CASTEiJ_G0015438.1 mouse_genomes_project 1 62279286 62300989 - Ndufs1 protein_coding retained_intron MGP_CASTEiJ_T0019464.1 MGP_CASTEiJ_G0015438.1 mouse_genomes_project 1 62282103 62300987 - Ndufs1 protein_coding retained_intron MGP_CASTEiJ_T0019465.1 MGP_CASTEiJ_G0015438.1 mouse_genomes_project 1 62287064 62301010 - MGP_CASTEiJ_P0019465 Ndufs1 protein_coding protein_coding MGP_CASTEiJ_T0019466.1 MGP_CASTEiJ_G0015438.1 mouse_genomes_project 1 62288240 62300986 - MGP_CASTEiJ_P0019466 Ndufs1 protein_coding protein_coding MGP_CASTEiJ_T0019467.1 MGP_CASTEiJ_G0015438.1 mouse_genomes_project 1 62293407 62301113 - MGP_CASTEiJ_P0019467 Ndufs1 protein_coding protein_coding MGP_CASTEiJ_T0019468.1 MGP_CASTEiJ_G0015438.1 mouse_genomes_project 1 62295000 62301153 - MGP_CASTEiJ_P0019468 Ndufs1 protein_coding protein_coding MGP_CASTEiJ_T0005588.1 MGP_CASTEiJ_G0004703.1 mouse_genomes_project 1 56206105 56225761 - 4930558J18Rik lincRNA lincRNA MGP_CASTEiJ_T0020472.1 MGP_CASTEiJ_G0015629.1 mouse_genomes_project 1 88190951 88339178 + MGP_CASTEiJ_P0020472 protein_coding protein_coding MGP_CASTEiJ_T0020473.1 MGP_CASTEiJ_G0015629.1 mouse_genomes_project 1 88194967 88339172 + MGP_CASTEiJ_P0020473 protein_coding protein_coding MGP_CASTEiJ_T0023452.1 MGP_CASTEiJ_G0016272.1 mouse_genomes_project 1 194502853 194556726 - MGP_CASTEiJ_P0023452 Cenpf protein_coding protein_coding MGP_CASTEiJ_T0023453.1 MGP_CASTEiJ_G0016272.1 mouse_genomes_project 1 194507178 194513312 - MGP_CASTEiJ_P0023453 Cenpf protein_coding protein_coding MGP_CASTEiJ_T0023454.1 MGP_CASTEiJ_G0016272.1 mouse_genomes_project 1 194525355 194556726 - MGP_CASTEiJ_P0023454 Cenpf protein_coding protein_coding MGP_CASTEiJ_T0023455.1 MGP_CASTEiJ_G0016272.1 mouse_genomes_project 1 194534294 194537684 - Cenpf protein_coding retained_intron MGP_CASTEiJ_T0023456.1 MGP_CASTEiJ_G0016272.1 mouse_genomes_project 1 194552444 194556675 - MGP_CASTEiJ_P0023456 Cenpf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023457.1 MGP_CASTEiJ_G0016272.1 mouse_genomes_project 1 194555695 194556726 - Cenpf protein_coding retained_intron MGP_CASTEiJ_T0011818.1 MGP_CASTEiJ_G0009981.1 mouse_genomes_project 1 94729491 94730318 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100330.1 MGP_CASTEiJ_G0037243.1 mouse_genomes_project 1 164199604 164199685 + Snord80 snoRNA snoRNA MGP_CASTEiJ_T0018130.1 MGP_CASTEiJ_G0015184.1 mouse_genomes_project 1 7350653 7364136 - MGP_CASTEiJ_P0018130 Cops5 protein_coding protein_coding MGP_CASTEiJ_T0018131.1 MGP_CASTEiJ_G0015184.1 mouse_genomes_project 1 7350895 7361140 - MGP_CASTEiJ_P0018131 Cops5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018132.1 MGP_CASTEiJ_G0015184.1 mouse_genomes_project 1 7353214 7363950 - MGP_CASTEiJ_P0018132 Cops5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018133.1 MGP_CASTEiJ_G0015184.1 mouse_genomes_project 1 7356715 7364158 - MGP_CASTEiJ_P0018133 Cops5 protein_coding protein_coding MGP_CASTEiJ_T0018134.1 MGP_CASTEiJ_G0015184.1 mouse_genomes_project 1 7356940 7363947 - Cops5 protein_coding retained_intron MGP_CASTEiJ_T0018135.1 MGP_CASTEiJ_G0015184.1 mouse_genomes_project 1 7359055 7364177 - Cops5 protein_coding retained_intron MGP_CASTEiJ_T0018136.1 MGP_CASTEiJ_G0015184.1 mouse_genomes_project 1 7363291 7363954 - Cops5 protein_coding retained_intron MGP_CASTEiJ_T0100319.1 MGP_CASTEiJ_G0037232.1 mouse_genomes_project 1 156202855 156202995 + Gm25588 snoRNA snoRNA MGP_CASTEiJ_T0099086.1 MGP_CASTEiJ_G0035999.1 mouse_genomes_project 1 56314780 56314937 + Gm24014 snRNA snRNA MGP_CASTEiJ_T0018478.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 31924984 32343820 + MGP_CASTEiJ_P0018478 Dst protein_coding protein_coding MGP_CASTEiJ_T0018479.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 31925031 32261341 + MGP_CASTEiJ_P0018479 Dst protein_coding unknown_likely_coding MGP_CASTEiJ_T0018480.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32031974 32205609 + MGP_CASTEiJ_P0018480 Dst protein_coding protein_coding MGP_CASTEiJ_T0018481.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32031976 32164771 + MGP_CASTEiJ_P0018481 Dst protein_coding protein_coding MGP_CASTEiJ_T0018482.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32032220 32164771 + MGP_CASTEiJ_P0018482 Dst protein_coding protein_coding MGP_CASTEiJ_T0018483.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32032270 32194009 + Dst protein_coding retained_intron MGP_CASTEiJ_T0018484.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32037895 32344738 + MGP_CASTEiJ_P0018484 Dst protein_coding protein_coding MGP_CASTEiJ_T0018485.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32037895 32344727 + MGP_CASTEiJ_P0018485 Dst protein_coding protein_coding MGP_CASTEiJ_T0018486.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32037908 32344729 + MGP_CASTEiJ_P0018486 Dst protein_coding protein_coding MGP_CASTEiJ_T0018487.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32112962 32145590 + Dst protein_coding retained_intron MGP_CASTEiJ_T0018488.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32148001 32183806 + Dst protein_coding processed_transcript MGP_CASTEiJ_T0018489.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32189550 32344481 + MGP_CASTEiJ_P0018489 Dst protein_coding protein_coding MGP_CASTEiJ_T0018490.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32189625 32224121 + MGP_CASTEiJ_P0018490 Dst protein_coding protein_coding MGP_CASTEiJ_T0018491.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32189625 32214719 + MGP_CASTEiJ_P0018491 Dst protein_coding protein_coding MGP_CASTEiJ_T0018492.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32191213 32194710 + Dst protein_coding retained_intron MGP_CASTEiJ_T0018493.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32209736 32214082 + Dst protein_coding retained_intron MGP_CASTEiJ_T0018494.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32268833 32344736 + MGP_CASTEiJ_P0018494 Dst protein_coding unknown_likely_coding MGP_CASTEiJ_T0018495.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32290363 32344481 + MGP_CASTEiJ_P0018495 Dst protein_coding protein_coding MGP_CASTEiJ_T0018496.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32302537 32304278 + Dst protein_coding retained_intron MGP_CASTEiJ_T0018497.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32325470 32339716 + MGP_CASTEiJ_P0018497 Dst protein_coding protein_coding MGP_CASTEiJ_T0018498.1 MGP_CASTEiJ_G0015258.1 mouse_genomes_project 1 32330657 32342899 + MGP_CASTEiJ_P0018498 Dst protein_coding protein_coding MGP_CASTEiJ_T0019000.1 MGP_CASTEiJ_G0015357.1 mouse_genomes_project 1 50694649 50824019 + MGP_CASTEiJ_P0019000 Stat4 protein_coding protein_coding MGP_CASTEiJ_T0019001.1 MGP_CASTEiJ_G0015357.1 mouse_genomes_project 1 50717491 50824014 + MGP_CASTEiJ_P0019001 Stat4 protein_coding protein_coding MGP_CASTEiJ_T0019002.1 MGP_CASTEiJ_G0015357.1 mouse_genomes_project 1 50717874 50785405 + Stat4 protein_coding retained_intron MGP_CASTEiJ_T0019003.1 MGP_CASTEiJ_G0015357.1 mouse_genomes_project 1 50821043 50824018 + Stat4 protein_coding retained_intron MGP_CASTEiJ_T0019495.1 MGP_CASTEiJ_G0015443.1 mouse_genomes_project 1 62806289 62873970 - MGP_CASTEiJ_P0019495 Dytn protein_coding protein_coding MGP_CASTEiJ_T0019496.1 MGP_CASTEiJ_G0015443.1 mouse_genomes_project 1 62850258 62873953 - Dytn protein_coding retained_intron MGP_CASTEiJ_T0018871.1 MGP_CASTEiJ_G0015333.1 mouse_genomes_project 1 42393436 42405305 + MGP_CASTEiJ_P0018871 1500015O10Rik protein_coding protein_coding MGP_CASTEiJ_T0099106.1 MGP_CASTEiJ_G0036019.1 mouse_genomes_project 1 106516739 106516846 + Gm26214 snRNA snRNA MGP_CASTEiJ_T0005747.1 MGP_CASTEiJ_G0004832.1 mouse_genomes_project 1 135519810 135531003 + Gm1627 lincRNA lincRNA MGP_CASTEiJ_T0002720.1 MGP_CASTEiJ_G0002589.1 mouse_genomes_project 1 63261508 63273722 + Gm13748 antisense antisense MGP_CASTEiJ_T0022887.1 MGP_CASTEiJ_G0016132.1 mouse_genomes_project 1 176159541 176162762 + MGP_CASTEiJ_P0022887 Slamf9 protein_coding protein_coding MGP_CASTEiJ_T0000479.1 MGP_CASTEiJ_G0000425.1 mouse_genomes_project 1 70003168 70010097 - TEC TEC MGP_CASTEiJ_T0005884.1 MGP_CASTEiJ_G0004938.1 mouse_genomes_project 1 192170774 192185473 + Gm37896 lincRNA lincRNA MGP_CASTEiJ_T0011606.1 MGP_CASTEiJ_G0009769.1 mouse_genomes_project 1 16614198 16614477 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000589.1 MGP_CASTEiJ_G0000535.1 mouse_genomes_project 1 131845427 131846954 + TEC TEC MGP_CASTEiJ_T0009286.1 MGP_CASTEiJ_G0007474.1 mouse_genomes_project 1 134390672 134390793 - Gm44300 miRNA miRNA MGP_CASTEiJ_T0011548.1 MGP_CASTEiJ_G0009711.1 mouse_genomes_project 1 1759568 1763962 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023272.1 MGP_CASTEiJ_G0016233.1 mouse_genomes_project 1 186580550 186592420 + MGP_CASTEiJ_P0023272 Srp9 protein_coding protein_coding MGP_CASTEiJ_T0023273.1 MGP_CASTEiJ_G0016233.1 mouse_genomes_project 1 186580563 186592908 + MGP_CASTEiJ_P0023273 Srp9 protein_coding protein_coding MGP_CASTEiJ_T0023274.1 MGP_CASTEiJ_G0016233.1 mouse_genomes_project 1 186580594 186584889 + Srp9 protein_coding retained_intron MGP_CASTEiJ_T0023275.1 MGP_CASTEiJ_G0016233.1 mouse_genomes_project 1 186591250 186592306 + Srp9 protein_coding retained_intron MGP_CASTEiJ_T0002816.1 MGP_CASTEiJ_G0002661.1 mouse_genomes_project 1 159170486 159171986 + 4930518J20Rik antisense antisense MGP_CASTEiJ_T0019088.1 MGP_CASTEiJ_G0015372.1 mouse_genomes_project 1 52069138 52098442 - MGP_CASTEiJ_P0019088 Gm28551 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0002864.1 MGP_CASTEiJ_G0002700.1 mouse_genomes_project 1 185159653 185162807 + H3f3aos antisense antisense MGP_CASTEiJ_T0002865.1 MGP_CASTEiJ_G0002700.1 mouse_genomes_project 1 185159661 185162636 + H3f3aos antisense antisense MGP_CASTEiJ_T0099116.1 MGP_CASTEiJ_G0036029.1 mouse_genomes_project 1 132464524 132464618 - Gm25549 snRNA snRNA MGP_CASTEiJ_T0022181.1 MGP_CASTEiJ_G0015982.1 mouse_genomes_project 1 161714793 161982627 - MGP_CASTEiJ_P0022181 protein_coding unknown_likely_coding MGP_CASTEiJ_T0022182.1 MGP_CASTEiJ_G0015982.1 mouse_genomes_project 1 161772057 161826005 - MGP_CASTEiJ_P0022182 protein_coding protein_coding MGP_CASTEiJ_T0022183.1 MGP_CASTEiJ_G0015982.1 mouse_genomes_project 1 161825809 161859250 - protein_coding retained_intron MGP_CASTEiJ_T0022184.1 MGP_CASTEiJ_G0015982.1 mouse_genomes_project 1 161843453 161854764 - protein_coding processed_transcript MGP_CASTEiJ_T0022185.1 MGP_CASTEiJ_G0015982.1 mouse_genomes_project 1 161982528 161984819 - protein_coding processed_transcript MGP_CASTEiJ_T0022186.1 MGP_CASTEiJ_G0015982.1 mouse_genomes_project 1 161982579 162006884 - protein_coding processed_transcript MGP_CASTEiJ_T0009317.1 MGP_CASTEiJ_G0007505.1 mouse_genomes_project 1 189908078 189908145 + Mir194-1 miRNA miRNA MGP_CASTEiJ_T0020332.1 MGP_CASTEiJ_G0015601.1 mouse_genomes_project 1 86511443 86554884 - Pde6d protein_coding retained_intron MGP_CASTEiJ_T0020333.1 MGP_CASTEiJ_G0015601.1 mouse_genomes_project 1 86511443 86554884 - MGP_CASTEiJ_P0020333 Pde6d protein_coding protein_coding MGP_CASTEiJ_T0020334.1 MGP_CASTEiJ_G0015601.1 mouse_genomes_project 1 86511471 86554966 - MGP_CASTEiJ_P0020334 Pde6d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020335.1 MGP_CASTEiJ_G0015601.1 mouse_genomes_project 1 86511972 86554854 - Pde6d protein_coding processed_transcript MGP_CASTEiJ_T0020336.1 MGP_CASTEiJ_G0015601.1 mouse_genomes_project 1 86513846 86554884 - MGP_CASTEiJ_P0020336 Pde6d protein_coding protein_coding MGP_CASTEiJ_T0005583.1 MGP_CASTEiJ_G0004699.1 mouse_genomes_project 1 54829662 54830888 + 1700003I22Rik lincRNA lincRNA MGP_CASTEiJ_T0005584.1 MGP_CASTEiJ_G0004699.1 mouse_genomes_project 1 54829707 54830822 + 1700003I22Rik lincRNA lincRNA MGP_CASTEiJ_T0019421.1 MGP_CASTEiJ_G0015430.1 mouse_genomes_project 1 59510482 59596392 - MGP_CASTEiJ_P0019421 Raph1 protein_coding protein_coding MGP_CASTEiJ_T0019422.1 MGP_CASTEiJ_G0015430.1 mouse_genomes_project 1 59511394 59527779 - MGP_CASTEiJ_P0019422 Raph1 protein_coding protein_coding MGP_CASTEiJ_T0019423.1 MGP_CASTEiJ_G0015430.1 mouse_genomes_project 1 59511445 59596378 - MGP_CASTEiJ_P0019423 Raph1 protein_coding protein_coding MGP_CASTEiJ_T0019424.1 MGP_CASTEiJ_G0015430.1 mouse_genomes_project 1 59518872 59596382 - MGP_CASTEiJ_P0019424 Raph1 protein_coding protein_coding MGP_CASTEiJ_T0019425.1 MGP_CASTEiJ_G0015430.1 mouse_genomes_project 1 59521527 59524487 - Raph1 protein_coding retained_intron MGP_CASTEiJ_T0019426.1 MGP_CASTEiJ_G0015430.1 mouse_genomes_project 1 59529830 59531493 - Raph1 protein_coding retained_intron MGP_CASTEiJ_T0019427.1 MGP_CASTEiJ_G0015430.1 mouse_genomes_project 1 59542068 59550498 - Raph1 protein_coding retained_intron MGP_CASTEiJ_T0019428.1 MGP_CASTEiJ_G0015430.1 mouse_genomes_project 1 59553450 59596657 - MGP_CASTEiJ_P0019428 Raph1 protein_coding protein_coding MGP_CASTEiJ_T0005566.1 MGP_CASTEiJ_G0004685.1 mouse_genomes_project 1 41866859 41931219 - Gm29040 lincRNA lincRNA MGP_CASTEiJ_T0098432.1 MGP_CASTEiJ_G0035363.1 mouse_genomes_project 1 105431434 105431546 - n-R5s216 rRNA rRNA MGP_CASTEiJ_T0000426.1 MGP_CASTEiJ_G0000372.1 mouse_genomes_project 1 41232939 41233615 + TEC TEC MGP_CASTEiJ_T0011950.1 MGP_CASTEiJ_G0010113.1 mouse_genomes_project 1 157144136 157144689 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011727.1 MGP_CASTEiJ_G0009890.1 mouse_genomes_project 1 56407749 56410514 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011746.1 MGP_CASTEiJ_G0009909.1 mouse_genomes_project 1 60600946 60601337 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100331.1 MGP_CASTEiJ_G0037244.1 mouse_genomes_project 1 164199607 164199684 + Snord80 snoRNA snoRNA MGP_CASTEiJ_T0101930.1 MGP_CASTEiJ_G0038655.1 mouse_genomes_project 1 105139695 105141069 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000691.1 MGP_CASTEiJ_G0000635.1 mouse_genomes_project 1 167877179 167880358 + TEC TEC MGP_CASTEiJ_T0011948.1 MGP_CASTEiJ_G0010111.1 mouse_genomes_project 1 155671677 155672380 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000632.1 MGP_CASTEiJ_G0000576.1 mouse_genomes_project 1 143794176 143795448 + TEC TEC MGP_CASTEiJ_T0019907.1 MGP_CASTEiJ_G0015528.1 mouse_genomes_project 1 74800515 74811553 - MGP_CASTEiJ_P0019907 Atg9a protein_coding protein_coding MGP_CASTEiJ_T0019908.1 MGP_CASTEiJ_G0015528.1 mouse_genomes_project 1 74800520 74811823 - MGP_CASTEiJ_P0019908 Atg9a protein_coding protein_coding MGP_CASTEiJ_T0019909.1 MGP_CASTEiJ_G0015528.1 mouse_genomes_project 1 74800520 74810009 - MGP_CASTEiJ_P0019909 Atg9a protein_coding protein_coding MGP_CASTEiJ_T0019910.1 MGP_CASTEiJ_G0015528.1 mouse_genomes_project 1 74800520 74811550 - MGP_CASTEiJ_P0019910 Atg9a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019911.1 MGP_CASTEiJ_G0015528.1 mouse_genomes_project 1 74800521 74811550 - MGP_CASTEiJ_P0019911 Atg9a protein_coding protein_coding MGP_CASTEiJ_T0019912.1 MGP_CASTEiJ_G0015528.1 mouse_genomes_project 1 74802632 74805679 - MGP_CASTEiJ_P0019912 Atg9a protein_coding protein_coding MGP_CASTEiJ_T0019913.1 MGP_CASTEiJ_G0015528.1 mouse_genomes_project 1 74807185 74811352 - Atg9a protein_coding retained_intron MGP_CASTEiJ_T0019914.1 MGP_CASTEiJ_G0015528.1 mouse_genomes_project 1 74809392 74811589 - Atg9a protein_coding retained_intron MGP_CASTEiJ_T0019915.1 MGP_CASTEiJ_G0015528.1 mouse_genomes_project 1 74809740 74811341 - MGP_CASTEiJ_P0019915 Atg9a protein_coding protein_coding MGP_CASTEiJ_T0099101.1 MGP_CASTEiJ_G0036014.1 mouse_genomes_project 1 93871293 93871396 + Gm26446 snRNA snRNA MGP_CASTEiJ_T0019182.1 MGP_CASTEiJ_G0015392.1 mouse_genomes_project 1 56236361 56257532 - MGP_CASTEiJ_P0019182 Tyw5 protein_coding protein_coding MGP_CASTEiJ_T0019183.1 MGP_CASTEiJ_G0015392.1 mouse_genomes_project 1 56236364 56256902 - Tyw5 protein_coding retained_intron MGP_CASTEiJ_T0019184.1 MGP_CASTEiJ_G0015392.1 mouse_genomes_project 1 56236364 56257105 - MGP_CASTEiJ_P0019184 Tyw5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019185.1 MGP_CASTEiJ_G0015392.1 mouse_genomes_project 1 56236529 56240471 - Tyw5 protein_coding processed_transcript MGP_CASTEiJ_T0019186.1 MGP_CASTEiJ_G0015392.1 mouse_genomes_project 1 56236540 56243423 - Tyw5 protein_coding retained_intron MGP_CASTEiJ_T0019187.1 MGP_CASTEiJ_G0015392.1 mouse_genomes_project 1 56236790 56256874 - MGP_CASTEiJ_P0019187 Tyw5 protein_coding protein_coding MGP_CASTEiJ_T0019188.1 MGP_CASTEiJ_G0015392.1 mouse_genomes_project 1 56236810 56241466 - Tyw5 protein_coding retained_intron MGP_CASTEiJ_T0019189.1 MGP_CASTEiJ_G0015392.1 mouse_genomes_project 1 56240411 56251268 - Tyw5 protein_coding processed_transcript MGP_CASTEiJ_T0019190.1 MGP_CASTEiJ_G0015392.1 mouse_genomes_project 1 56241154 56256902 - MGP_CASTEiJ_P0019190 Tyw5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019191.1 MGP_CASTEiJ_G0015392.1 mouse_genomes_project 1 56242909 56256968 - Tyw5 protein_coding retained_intron MGP_CASTEiJ_T0009273.1 MGP_CASTEiJ_G0007461.1 mouse_genomes_project 1 92907798 92907858 - Mir6900 miRNA miRNA MGP_CASTEiJ_T0011945.1 MGP_CASTEiJ_G0010108.1 mouse_genomes_project 1 154131551 154131792 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005894.1 MGP_CASTEiJ_G0004947.1 mouse_genomes_project 1 196431574 196460145 - Gm32200 lincRNA lincRNA MGP_CASTEiJ_T0011949.1 MGP_CASTEiJ_G0010112.1 mouse_genomes_project 1 156051723 156052770 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021922.1 MGP_CASTEiJ_G0015935.1 mouse_genomes_project 1 155458845 155465754 + MGP_CASTEiJ_P0021922 Apobec4 protein_coding protein_coding MGP_CASTEiJ_T0018690.1 MGP_CASTEiJ_G0015293.1 mouse_genomes_project 1 35977800 36083725 - MGP_CASTEiJ_P0018690 Tsga10 protein_coding protein_coding MGP_CASTEiJ_T0018691.1 MGP_CASTEiJ_G0015293.1 mouse_genomes_project 1 35987322 36074020 - MGP_CASTEiJ_P0018691 Tsga10 protein_coding protein_coding MGP_CASTEiJ_T0018692.1 MGP_CASTEiJ_G0015293.1 mouse_genomes_project 1 35987322 36085075 - MGP_CASTEiJ_P0018692 Tsga10 protein_coding protein_coding MGP_CASTEiJ_T0018693.1 MGP_CASTEiJ_G0015293.1 mouse_genomes_project 1 36013936 36073993 - MGP_CASTEiJ_P0018693 Tsga10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018694.1 MGP_CASTEiJ_G0015293.1 mouse_genomes_project 1 36048596 36083482 - MGP_CASTEiJ_P0018694 Tsga10 protein_coding protein_coding MGP_CASTEiJ_T0018695.1 MGP_CASTEiJ_G0015293.1 mouse_genomes_project 1 36049628 36083719 - MGP_CASTEiJ_P0018695 Tsga10 protein_coding protein_coding MGP_CASTEiJ_T0018696.1 MGP_CASTEiJ_G0015293.1 mouse_genomes_project 1 36050464 36083719 - MGP_CASTEiJ_P0018696 Tsga10 protein_coding protein_coding MGP_CASTEiJ_T0018697.1 MGP_CASTEiJ_G0015293.1 mouse_genomes_project 1 36057888 36062364 - Tsga10 protein_coding retained_intron MGP_CASTEiJ_T0000696.1 MGP_CASTEiJ_G0000640.1 mouse_genomes_project 1 169156559 169158687 - TEC TEC MGP_CASTEiJ_T0005623.1 MGP_CASTEiJ_G0004731.1 mouse_genomes_project 1 71479187 71538439 - 4930556G22Rik lincRNA lincRNA MGP_CASTEiJ_T0021448.1 MGP_CASTEiJ_G0015842.1 mouse_genomes_project 1 135232064 135343358 - MGP_CASTEiJ_P0021448 Atp2b4 protein_coding protein_coding MGP_CASTEiJ_T0021449.1 MGP_CASTEiJ_G0015842.1 mouse_genomes_project 1 135238462 135295756 - MGP_CASTEiJ_P0021449 Atp2b4 protein_coding protein_coding MGP_CASTEiJ_T0021450.1 MGP_CASTEiJ_G0015842.1 mouse_genomes_project 1 135238462 135295756 - MGP_CASTEiJ_P0021450 Atp2b4 protein_coding protein_coding MGP_CASTEiJ_T0021451.1 MGP_CASTEiJ_G0015842.1 mouse_genomes_project 1 135242111 135295690 - MGP_CASTEiJ_P0021451 Atp2b4 protein_coding protein_coding MGP_CASTEiJ_T0021452.1 MGP_CASTEiJ_G0015842.1 mouse_genomes_project 1 135251065 135295290 - MGP_CASTEiJ_P0021452 Atp2b4 protein_coding protein_coding MGP_CASTEiJ_T0021453.1 MGP_CASTEiJ_G0015842.1 mouse_genomes_project 1 135253410 135255029 - Atp2b4 protein_coding retained_intron MGP_CASTEiJ_T0021454.1 MGP_CASTEiJ_G0015842.1 mouse_genomes_project 1 135295708 135343353 - Atp2b4 protein_coding processed_transcript MGP_CASTEiJ_T0005766.1 MGP_CASTEiJ_G0004847.1 mouse_genomes_project 1 140069465 140071908 - Gm28556 lincRNA lincRNA MGP_CASTEiJ_T0021333.1 MGP_CASTEiJ_G0015818.1 mouse_genomes_project 1 133731786 133740554 + MGP_CASTEiJ_P0021333 Klhdc8a protein_coding protein_coding MGP_CASTEiJ_T0005696.1 MGP_CASTEiJ_G0004791.1 mouse_genomes_project 1 101677481 101701333 + Gm20268 lincRNA lincRNA MGP_CASTEiJ_T0020482.1 MGP_CASTEiJ_G0015632.1 mouse_genomes_project 1 88318673 88339172 + MGP_CASTEiJ_P0020482 Ugt1a2 protein_coding protein_coding MGP_CASTEiJ_T0100258.1 MGP_CASTEiJ_G0037171.1 mouse_genomes_project 1 18481399 18481530 - Gm24171 snoRNA snoRNA MGP_CASTEiJ_T0100279.1 MGP_CASTEiJ_G0037192.1 mouse_genomes_project 1 58646317 58646401 + Snord11 snoRNA snoRNA MGP_CASTEiJ_T0000613.1 MGP_CASTEiJ_G0000558.1 mouse_genomes_project 1 139769420 139773316 + TEC TEC MGP_CASTEiJ_T0100288.1 MGP_CASTEiJ_G0037201.1 mouse_genomes_project 1 83934056 83934180 + Gm24555 snoRNA snoRNA MGP_CASTEiJ_T0011797.1 MGP_CASTEiJ_G0009960.1 mouse_genomes_project 1 83052183 83052552 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011552.1 MGP_CASTEiJ_G0009715.1 mouse_genomes_project 1 1934847 1936054 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018398.1 MGP_CASTEiJ_G0015241.1 mouse_genomes_project 1 22430260 22460191 + MGP_CASTEiJ_P0018398 Lmbrd1 protein_coding protein_coding MGP_CASTEiJ_T0018399.1 MGP_CASTEiJ_G0015241.1 mouse_genomes_project 1 22430339 22478294 + MGP_CASTEiJ_P0018399 Lmbrd1 protein_coding protein_coding MGP_CASTEiJ_T0018400.1 MGP_CASTEiJ_G0015241.1 mouse_genomes_project 1 22430357 22517224 + MGP_CASTEiJ_P0018400 Lmbrd1 protein_coding protein_coding MGP_CASTEiJ_T0018401.1 MGP_CASTEiJ_G0015241.1 mouse_genomes_project 1 22475107 22492586 + Lmbrd1 protein_coding retained_intron MGP_CASTEiJ_T0018402.1 MGP_CASTEiJ_G0015241.1 mouse_genomes_project 1 22492510 22513339 + MGP_CASTEiJ_P0018402 Lmbrd1 protein_coding protein_coding MGP_CASTEiJ_T0018748.1 MGP_CASTEiJ_G0015303.1 mouse_genomes_project 1 37066976 37111629 - MGP_CASTEiJ_P0018748 Lonrf2 protein_coding protein_coding MGP_CASTEiJ_T0018749.1 MGP_CASTEiJ_G0015303.1 mouse_genomes_project 1 37067828 37095358 - MGP_CASTEiJ_P0018749 Lonrf2 protein_coding protein_coding MGP_CASTEiJ_T0018750.1 MGP_CASTEiJ_G0015303.1 mouse_genomes_project 1 37110079 37111272 - Lonrf2 protein_coding retained_intron MGP_CASTEiJ_T0101934.1 MGP_CASTEiJ_G0038659.1 mouse_genomes_project 1 133313203 133314012 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0005839.1 MGP_CASTEiJ_G0004907.1 mouse_genomes_project 1 184480197 184496240 - Gm37336 lincRNA lincRNA MGP_CASTEiJ_T0005840.1 MGP_CASTEiJ_G0004907.1 mouse_genomes_project 1 184495837 184496305 - Gm37336 lincRNA lincRNA MGP_CASTEiJ_T0021294.1 MGP_CASTEiJ_G0015812.1 mouse_genomes_project 1 133382483 133402271 + MGP_CASTEiJ_P0021294 Slc45a3 protein_coding protein_coding MGP_CASTEiJ_T0021295.1 MGP_CASTEiJ_G0015812.1 mouse_genomes_project 1 133390102 133402266 + MGP_CASTEiJ_P0021295 Slc45a3 protein_coding protein_coding MGP_CASTEiJ_T0021296.1 MGP_CASTEiJ_G0015812.1 mouse_genomes_project 1 133396237 133397464 + MGP_CASTEiJ_P0021296 Slc45a3 protein_coding protein_coding MGP_CASTEiJ_T0021297.1 MGP_CASTEiJ_G0015812.1 mouse_genomes_project 1 133398482 133401208 + Slc45a3 protein_coding processed_transcript MGP_CASTEiJ_T0005629.1 MGP_CASTEiJ_G0004735.1 mouse_genomes_project 1 72985914 73001849 - Pinc lincRNA lincRNA MGP_CASTEiJ_T0005630.1 MGP_CASTEiJ_G0004735.1 mouse_genomes_project 1 72991622 73001849 - Pinc lincRNA lincRNA MGP_CASTEiJ_T0012028.1 MGP_CASTEiJ_G0010191.1 mouse_genomes_project 1 196472998 196473481 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021756.1 MGP_CASTEiJ_G0015906.1 mouse_genomes_project 1 142477352 142873682 + MGP_CASTEiJ_P0021756 Kcnt2 protein_coding protein_coding MGP_CASTEiJ_T0021757.1 MGP_CASTEiJ_G0015906.1 mouse_genomes_project 1 142477389 142871696 + MGP_CASTEiJ_P0021757 Kcnt2 protein_coding protein_coding MGP_CASTEiJ_T0021758.1 MGP_CASTEiJ_G0015906.1 mouse_genomes_project 1 142477401 142871993 + MGP_CASTEiJ_P0021758 Kcnt2 protein_coding protein_coding MGP_CASTEiJ_T0021759.1 MGP_CASTEiJ_G0015906.1 mouse_genomes_project 1 142698282 142699277 + Kcnt2 protein_coding retained_intron MGP_CASTEiJ_T0021760.1 MGP_CASTEiJ_G0015906.1 mouse_genomes_project 1 142698447 142777969 + Kcnt2 protein_coding processed_transcript MGP_CASTEiJ_T0021761.1 MGP_CASTEiJ_G0015906.1 mouse_genomes_project 1 142771430 142829538 + MGP_CASTEiJ_P0021761 Kcnt2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000744.1 MGP_CASTEiJ_G0000686.1 mouse_genomes_project 1 190818797 190819285 + TEC TEC MGP_CASTEiJ_T0019817.1 MGP_CASTEiJ_G0015510.1 mouse_genomes_project 1 74246634 74255194 - MGP_CASTEiJ_P0019817 Rnf25 protein_coding protein_coding MGP_CASTEiJ_T0019818.1 MGP_CASTEiJ_G0015510.1 mouse_genomes_project 1 74246634 74255169 - MGP_CASTEiJ_P0019818 Rnf25 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019819.1 MGP_CASTEiJ_G0015510.1 mouse_genomes_project 1 74246639 74255174 - MGP_CASTEiJ_P0019819 Rnf25 protein_coding protein_coding MGP_CASTEiJ_T0019820.1 MGP_CASTEiJ_G0015510.1 mouse_genomes_project 1 74246641 74252894 - MGP_CASTEiJ_P0019820 Rnf25 protein_coding protein_coding MGP_CASTEiJ_T0019821.1 MGP_CASTEiJ_G0015510.1 mouse_genomes_project 1 74247108 74247688 - Rnf25 protein_coding retained_intron MGP_CASTEiJ_T0019822.1 MGP_CASTEiJ_G0015510.1 mouse_genomes_project 1 74248771 74254395 - MGP_CASTEiJ_P0019822 Rnf25 protein_coding protein_coding MGP_CASTEiJ_T0019823.1 MGP_CASTEiJ_G0015510.1 mouse_genomes_project 1 74251961 74252375 - Rnf25 protein_coding retained_intron MGP_CASTEiJ_T0019824.1 MGP_CASTEiJ_G0015510.1 mouse_genomes_project 1 74252140 74255142 - MGP_CASTEiJ_P0019824 Rnf25 protein_coding protein_coding MGP_CASTEiJ_T0019825.1 MGP_CASTEiJ_G0015510.1 mouse_genomes_project 1 74252327 74255191 - Rnf25 protein_coding retained_intron MGP_CASTEiJ_T0019826.1 MGP_CASTEiJ_G0015510.1 mouse_genomes_project 1 74252510 74255162 - MGP_CASTEiJ_P0019826 Rnf25 protein_coding protein_coding MGP_CASTEiJ_T0005524.1 MGP_CASTEiJ_G0004660.1 mouse_genomes_project 1 31228589 31231295 - Gm37591 lincRNA lincRNA MGP_CASTEiJ_T0011995.1 MGP_CASTEiJ_G0010158.1 mouse_genomes_project 1 175375879 175376431 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000405.1 MGP_CASTEiJ_G0000351.1 mouse_genomes_project 1 31940447 31944759 + TEC TEC MGP_CASTEiJ_T0020900.1 MGP_CASTEiJ_G0015724.1 mouse_genomes_project 1 107539803 107564449 + MGP_CASTEiJ_P0020900 Serpinb12 protein_coding protein_coding MGP_CASTEiJ_T0020901.1 MGP_CASTEiJ_G0015724.1 mouse_genomes_project 1 107544733 107564449 + MGP_CASTEiJ_P0020901 Serpinb12 protein_coding protein_coding MGP_CASTEiJ_T0020902.1 MGP_CASTEiJ_G0015724.1 mouse_genomes_project 1 107544735 107557780 + Serpinb12 protein_coding retained_intron MGP_CASTEiJ_T0002860.1 MGP_CASTEiJ_G0002696.1 mouse_genomes_project 1 182479909 182482990 - antisense antisense MGP_CASTEiJ_T0020542.1 MGP_CASTEiJ_G0015651.1 mouse_genomes_project 1 91384883 91505207 + MGP_CASTEiJ_P0020542 Lrrfip1 protein_coding protein_coding MGP_CASTEiJ_T0020543.1 MGP_CASTEiJ_G0015651.1 mouse_genomes_project 1 91384923 91520930 + MGP_CASTEiJ_P0020543 Lrrfip1 protein_coding protein_coding MGP_CASTEiJ_T0020544.1 MGP_CASTEiJ_G0015651.1 mouse_genomes_project 1 91384925 91527220 + MGP_CASTEiJ_P0020544 Lrrfip1 protein_coding protein_coding MGP_CASTEiJ_T0020545.1 MGP_CASTEiJ_G0015651.1 mouse_genomes_project 1 91441637 91527224 + MGP_CASTEiJ_P0020545 Lrrfip1 protein_coding protein_coding MGP_CASTEiJ_T0020546.1 MGP_CASTEiJ_G0015651.1 mouse_genomes_project 1 91441647 91515699 + MGP_CASTEiJ_P0020546 Lrrfip1 protein_coding protein_coding MGP_CASTEiJ_T0020547.1 MGP_CASTEiJ_G0015651.1 mouse_genomes_project 1 91441700 91527198 + MGP_CASTEiJ_P0020547 Lrrfip1 protein_coding protein_coding MGP_CASTEiJ_T0020548.1 MGP_CASTEiJ_G0015651.1 mouse_genomes_project 1 91441700 91494524 + MGP_CASTEiJ_P0020548 Lrrfip1 protein_coding protein_coding MGP_CASTEiJ_T0020549.1 MGP_CASTEiJ_G0015651.1 mouse_genomes_project 1 91441779 91526570 + MGP_CASTEiJ_P0020549 Lrrfip1 protein_coding protein_coding MGP_CASTEiJ_T0020550.1 MGP_CASTEiJ_G0015651.1 mouse_genomes_project 1 91441846 91515704 + MGP_CASTEiJ_P0020550 Lrrfip1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020551.1 MGP_CASTEiJ_G0015651.1 mouse_genomes_project 1 91509667 91513206 + Lrrfip1 protein_coding processed_transcript MGP_CASTEiJ_T0020552.1 MGP_CASTEiJ_G0015651.1 mouse_genomes_project 1 91509667 91515305 + Lrrfip1 protein_coding processed_transcript MGP_CASTEiJ_T0020553.1 MGP_CASTEiJ_G0015651.1 mouse_genomes_project 1 91518346 91520916 + Lrrfip1 protein_coding processed_transcript MGP_CASTEiJ_T0020554.1 MGP_CASTEiJ_G0015651.1 mouse_genomes_project 1 91523772 91526461 + Lrrfip1 protein_coding retained_intron MGP_CASTEiJ_T0000470.1 MGP_CASTEiJ_G0000416.1 mouse_genomes_project 1 66054083 66058779 - TEC TEC MGP_CASTEiJ_T0099135.1 MGP_CASTEiJ_G0036048.1 mouse_genomes_project 1 175051267 175051383 - Gm24871 snRNA snRNA MGP_CASTEiJ_T0099077.1 MGP_CASTEiJ_G0035990.1 mouse_genomes_project 1 31208382 31208490 + Gm24901 snRNA snRNA MGP_CASTEiJ_T0022591.1 MGP_CASTEiJ_G0016064.1 mouse_genomes_project 1 172914240 172950982 - MGP_CASTEiJ_P0022591 Nuf2 protein_coding protein_coding MGP_CASTEiJ_T0022592.1 MGP_CASTEiJ_G0016064.1 mouse_genomes_project 1 172914568 172950946 - MGP_CASTEiJ_P0022592 Nuf2 protein_coding protein_coding MGP_CASTEiJ_T0022593.1 MGP_CASTEiJ_G0016064.1 mouse_genomes_project 1 172922462 172940977 - MGP_CASTEiJ_P0022593 Nuf2 protein_coding protein_coding MGP_CASTEiJ_T0022594.1 MGP_CASTEiJ_G0016064.1 mouse_genomes_project 1 172927319 172950929 - MGP_CASTEiJ_P0022594 Nuf2 protein_coding protein_coding MGP_CASTEiJ_T0022595.1 MGP_CASTEiJ_G0016064.1 mouse_genomes_project 1 172943582 172950936 - Nuf2 protein_coding retained_intron MGP_CASTEiJ_T0101956.1 MGP_CASTEiJ_G0038681.1 mouse_genomes_project 1 182072311 182091732 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011978.1 MGP_CASTEiJ_G0010141.1 mouse_genomes_project 1 168880743 168881815 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005823.1 MGP_CASTEiJ_G0004892.1 mouse_genomes_project 1 170304486 170323884 - Gm16701 lincRNA lincRNA MGP_CASTEiJ_T0000553.1 MGP_CASTEiJ_G0000499.1 mouse_genomes_project 1 112614008 112614411 + TEC TEC MGP_CASTEiJ_T0022967.1 MGP_CASTEiJ_G0016165.1 mouse_genomes_project 1 178029147 178030095 + MGP_CASTEiJ_P0022967 Olfr427 protein_coding protein_coding MGP_CASTEiJ_T0019703.1 MGP_CASTEiJ_G0015487.1 mouse_genomes_project 1 72178268 72236985 - MGP_CASTEiJ_P0019703 Ankar protein_coding protein_coding MGP_CASTEiJ_T0000415.1 MGP_CASTEiJ_G0000361.1 mouse_genomes_project 1 35526610 35527144 - TEC TEC MGP_CASTEiJ_T0005685.1 MGP_CASTEiJ_G0004782.1 mouse_genomes_project 1 93226471 93227708 - Gm29482 lincRNA lincRNA MGP_CASTEiJ_T0019557.1 MGP_CASTEiJ_G0015462.1 mouse_genomes_project 1 64390172 64411452 + Pikfyve protein_coding retained_intron MGP_CASTEiJ_T0019558.1 MGP_CASTEiJ_G0015462.1 mouse_genomes_project 1 64390178 64453965 + MGP_CASTEiJ_P0019558 Pikfyve protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019559.1 MGP_CASTEiJ_G0015462.1 mouse_genomes_project 1 64390182 64432968 + Pikfyve protein_coding retained_intron MGP_CASTEiJ_T0019560.1 MGP_CASTEiJ_G0015462.1 mouse_genomes_project 1 64390183 64397302 + Pikfyve protein_coding retained_intron MGP_CASTEiJ_T0019561.1 MGP_CASTEiJ_G0015462.1 mouse_genomes_project 1 64390185 64411919 + Pikfyve protein_coding processed_transcript MGP_CASTEiJ_T0019562.1 MGP_CASTEiJ_G0015462.1 mouse_genomes_project 1 64390191 64488927 + MGP_CASTEiJ_P0019562 Pikfyve protein_coding protein_coding MGP_CASTEiJ_T0019563.1 MGP_CASTEiJ_G0015462.1 mouse_genomes_project 1 64390193 64441181 + Pikfyve protein_coding retained_intron MGP_CASTEiJ_T0019564.1 MGP_CASTEiJ_G0015462.1 mouse_genomes_project 1 64390202 64397005 + MGP_CASTEiJ_P0019564 Pikfyve protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019565.1 MGP_CASTEiJ_G0015462.1 mouse_genomes_project 1 64390239 64484252 + MGP_CASTEiJ_P0019565 Pikfyve protein_coding protein_coding MGP_CASTEiJ_T0019566.1 MGP_CASTEiJ_G0015462.1 mouse_genomes_project 1 64401573 64421997 + Pikfyve protein_coding retained_intron MGP_CASTEiJ_T0011780.1 MGP_CASTEiJ_G0009943.1 mouse_genomes_project 1 75274999 75276751 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002786.1 MGP_CASTEiJ_G0002638.1 mouse_genomes_project 1 134533604 134551861 - Gm28609 antisense antisense MGP_CASTEiJ_T0011687.1 MGP_CASTEiJ_G0009850.1 mouse_genomes_project 1 46429680 46430523 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005591.1 MGP_CASTEiJ_G0004705.1 mouse_genomes_project 1 58276062 58300231 + lincRNA lincRNA MGP_CASTEiJ_T0016321.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164196425 164199535 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016322.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164196610 164200543 + Gas5 processed_transcript lincRNA MGP_CASTEiJ_T0016323.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164196932 164200539 + Gas5 processed_transcript lincRNA MGP_CASTEiJ_T0016324.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164197070 164200541 + Gas5 processed_transcript lincRNA MGP_CASTEiJ_T0016325.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164197166 164199550 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016326.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164197166 164200537 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016327.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164197166 164200541 + Gas5 processed_transcript lincRNA MGP_CASTEiJ_T0016328.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164197169 164200543 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016329.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164197169 164200538 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016330.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164197169 164199060 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016331.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164197169 164200543 + Gas5 processed_transcript lincRNA MGP_CASTEiJ_T0016332.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164197170 164200250 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016333.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164197171 164199564 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016334.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164197175 164198633 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016335.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164197181 164200543 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016336.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164197187 164200543 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016337.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164197189 164200482 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016338.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164197191 164200543 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016339.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164198023 164198892 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016340.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164198698 164200543 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016341.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164199291 164200536 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016342.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164199312 164200129 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016343.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164199356 164200539 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016344.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164199721 164200541 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0016345.1 MGP_CASTEiJ_G0014434.1 mouse_genomes_project 1 164199784 164200543 + Gas5 processed_transcript retained_intron MGP_CASTEiJ_T0018358.1 MGP_CASTEiJ_G0015232.1 mouse_genomes_project 1 19954863 20499828 - MGP_CASTEiJ_P0018358 protein_coding protein_coding MGP_CASTEiJ_T0018359.1 MGP_CASTEiJ_G0015232.1 mouse_genomes_project 1 19954863 20499828 - MGP_CASTEiJ_P0018359 protein_coding protein_coding MGP_CASTEiJ_T0018360.1 MGP_CASTEiJ_G0015232.1 mouse_genomes_project 1 19954863 20499828 - MGP_CASTEiJ_P0018360 protein_coding protein_coding MGP_CASTEiJ_T0018361.1 MGP_CASTEiJ_G0015232.1 mouse_genomes_project 1 19954863 20499828 - MGP_CASTEiJ_P0018361 protein_coding protein_coding MGP_CASTEiJ_T0018362.1 MGP_CASTEiJ_G0015232.1 mouse_genomes_project 1 19954863 20499828 - MGP_CASTEiJ_P0018362 protein_coding protein_coding MGP_CASTEiJ_T0018363.1 MGP_CASTEiJ_G0015232.1 mouse_genomes_project 1 19955527 19988664 - MGP_CASTEiJ_P0018363 protein_coding protein_coding MGP_CASTEiJ_T0018364.1 MGP_CASTEiJ_G0015232.1 mouse_genomes_project 1 19957054 20207444 - MGP_CASTEiJ_P0018364 protein_coding unknown_likely_coding MGP_CASTEiJ_T0018365.1 MGP_CASTEiJ_G0015232.1 mouse_genomes_project 1 19957054 20123593 - MGP_CASTEiJ_P0018365 protein_coding protein_coding MGP_CASTEiJ_T0018366.1 MGP_CASTEiJ_G0015232.1 mouse_genomes_project 1 20127744 20499828 - MGP_CASTEiJ_P0018366 protein_coding protein_coding MGP_CASTEiJ_T0002874.1 MGP_CASTEiJ_G0002708.1 mouse_genomes_project 1 191668025 191671119 - Gm37912 antisense antisense MGP_CASTEiJ_T0018527.1 MGP_CASTEiJ_G0015267.1 mouse_genomes_project 1 32908478 32947233 - MGP_CASTEiJ_P0018527 Fam168b protein_coding protein_coding MGP_CASTEiJ_T0018528.1 MGP_CASTEiJ_G0015267.1 mouse_genomes_project 1 32908485 32947248 - MGP_CASTEiJ_P0018528 Fam168b protein_coding protein_coding MGP_CASTEiJ_T0018529.1 MGP_CASTEiJ_G0015267.1 mouse_genomes_project 1 32912546 32947147 - MGP_CASTEiJ_P0018529 Fam168b protein_coding protein_coding MGP_CASTEiJ_T0018530.1 MGP_CASTEiJ_G0015267.1 mouse_genomes_project 1 32912546 32947168 - MGP_CASTEiJ_P0018530 Fam168b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018531.1 MGP_CASTEiJ_G0015267.1 mouse_genomes_project 1 32913166 32947217 - MGP_CASTEiJ_P0018531 Fam168b protein_coding protein_coding MGP_CASTEiJ_T0018532.1 MGP_CASTEiJ_G0015267.1 mouse_genomes_project 1 32918945 32947196 - Fam168b protein_coding processed_transcript MGP_CASTEiJ_T0018533.1 MGP_CASTEiJ_G0015267.1 mouse_genomes_project 1 32919032 32947187 - MGP_CASTEiJ_P0018533 Fam168b protein_coding protein_coding MGP_CASTEiJ_T0018534.1 MGP_CASTEiJ_G0015267.1 mouse_genomes_project 1 32928025 32947248 - Fam168b protein_coding retained_intron MGP_CASTEiJ_T0011933.1 MGP_CASTEiJ_G0010096.1 mouse_genomes_project 1 151439758 151440277 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101708.1 MGP_CASTEiJ_G0038527.1 mouse_genomes_project 1 15536756 15559074 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101709.1 MGP_CASTEiJ_G0038527.1 mouse_genomes_project 1 15548658 15558565 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0005586.1 MGP_CASTEiJ_G0004701.1 mouse_genomes_project 1 55969763 55971824 + 1700126A01Rik lincRNA lincRNA MGP_CASTEiJ_T0011630.1 MGP_CASTEiJ_G0009793.1 mouse_genomes_project 1 26797073 26797377 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012036.1 MGP_CASTEiJ_G0010199.1 mouse_genomes_project 1 199883068 199883426 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002829.1 MGP_CASTEiJ_G0002672.1 mouse_genomes_project 1 165447563 165456210 + Dnm3os antisense antisense MGP_CASTEiJ_T0002830.1 MGP_CASTEiJ_G0002672.1 mouse_genomes_project 1 165447563 165456212 + Dnm3os antisense antisense MGP_CASTEiJ_T0002831.1 MGP_CASTEiJ_G0002672.1 mouse_genomes_project 1 165447604 165452748 + Dnm3os antisense antisense MGP_CASTEiJ_T0000532.1 MGP_CASTEiJ_G0000478.1 mouse_genomes_project 1 92416131 92421689 + TEC TEC MGP_CASTEiJ_T0005824.1 MGP_CASTEiJ_G0004893.1 mouse_genomes_project 1 170322409 170325047 - Gm16701 lincRNA lincRNA MGP_CASTEiJ_T0005589.1 MGP_CASTEiJ_G0004704.1 mouse_genomes_project 1 57379464 57386898 + Gm15834 lincRNA lincRNA MGP_CASTEiJ_T0005590.1 MGP_CASTEiJ_G0004704.1 mouse_genomes_project 1 57379468 57393043 + Gm15834 lincRNA lincRNA MGP_CASTEiJ_T0000318.1 MGP_CASTEiJ_G0000267.1 mouse_genomes_project 1 655859 658169 - TEC TEC MGP_CASTEiJ_T0000716.1 MGP_CASTEiJ_G0000660.1 mouse_genomes_project 1 181100195 181101496 - TEC TEC MGP_CASTEiJ_T0023056.1 MGP_CASTEiJ_G0016190.1 mouse_genomes_project 1 181033346 181275954 - MGP_CASTEiJ_P0023056 Akt3 protein_coding protein_coding MGP_CASTEiJ_T0023057.1 MGP_CASTEiJ_G0016190.1 mouse_genomes_project 1 181035388 181275925 - MGP_CASTEiJ_P0023057 Akt3 protein_coding protein_coding MGP_CASTEiJ_T0023058.1 MGP_CASTEiJ_G0016190.1 mouse_genomes_project 1 181035389 181276024 - MGP_CASTEiJ_P0023058 Akt3 protein_coding protein_coding MGP_CASTEiJ_T0000710.1 MGP_CASTEiJ_G0000654.1 mouse_genomes_project 1 180354150 180357722 - TEC TEC MGP_CASTEiJ_T0019805.1 MGP_CASTEiJ_G0015508.1 mouse_genomes_project 1 74217771 74241198 - MGP_CASTEiJ_P0019805 Zfp142 protein_coding protein_coding MGP_CASTEiJ_T0019806.1 MGP_CASTEiJ_G0015508.1 mouse_genomes_project 1 74219074 74241195 - MGP_CASTEiJ_P0019806 Zfp142 protein_coding protein_coding MGP_CASTEiJ_T0019807.1 MGP_CASTEiJ_G0015508.1 mouse_genomes_project 1 74219150 74241315 - MGP_CASTEiJ_P0019807 Zfp142 protein_coding protein_coding MGP_CASTEiJ_T0019808.1 MGP_CASTEiJ_G0015508.1 mouse_genomes_project 1 74219331 74241416 - MGP_CASTEiJ_P0019808 Zfp142 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019809.1 MGP_CASTEiJ_G0015508.1 mouse_genomes_project 1 74219517 74238842 - MGP_CASTEiJ_P0019809 Zfp142 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019810.1 MGP_CASTEiJ_G0015508.1 mouse_genomes_project 1 74235355 74241365 - Zfp142 protein_coding retained_intron MGP_CASTEiJ_T0019811.1 MGP_CASTEiJ_G0015508.1 mouse_genomes_project 1 74235362 74241122 - Zfp142 protein_coding retained_intron MGP_CASTEiJ_T0019812.1 MGP_CASTEiJ_G0015508.1 mouse_genomes_project 1 74238763 74241303 - Zfp142 protein_coding processed_transcript MGP_CASTEiJ_T0020905.1 MGP_CASTEiJ_G0015726.1 mouse_genomes_project 1 107672509 107948255 - MGP_CASTEiJ_P0020905 protein_coding protein_coding MGP_CASTEiJ_T0020906.1 MGP_CASTEiJ_G0015726.1 mouse_genomes_project 1 107672527 107948255 - MGP_CASTEiJ_P0020906 protein_coding protein_coding MGP_CASTEiJ_T0012021.1 MGP_CASTEiJ_G0010184.1 mouse_genomes_project 1 191780222 191780548 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000529.1 MGP_CASTEiJ_G0000475.1 mouse_genomes_project 1 91223322 91225175 - TEC TEC MGP_CASTEiJ_T0020698.1 MGP_CASTEiJ_G0015683.1 mouse_genomes_project 1 93631517 93641615 + MGP_CASTEiJ_P0020698 Agxt protein_coding protein_coding MGP_CASTEiJ_T0020699.1 MGP_CASTEiJ_G0015683.1 mouse_genomes_project 1 93631845 93634289 + Agxt protein_coding retained_intron MGP_CASTEiJ_T0020700.1 MGP_CASTEiJ_G0015683.1 mouse_genomes_project 1 93636081 93641611 + Agxt protein_coding processed_transcript MGP_CASTEiJ_T0098784.1 MGP_CASTEiJ_G0035715.1 mouse_genomes_project 1 50580769 50583275 - Gm28323 sense_intronic sense_intronic MGP_CASTEiJ_T0002755.1 MGP_CASTEiJ_G0002616.1 mouse_genomes_project 1 93419200 93437227 - 9430060I03Rik antisense antisense MGP_CASTEiJ_T0011922.1 MGP_CASTEiJ_G0010085.1 mouse_genomes_project 1 145441289 145442560 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011681.1 MGP_CASTEiJ_G0009844.1 mouse_genomes_project 1 44448640 44451555 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005514.1 MGP_CASTEiJ_G0004651.1 mouse_genomes_project 1 21009001 21009400 + Gm27028 lincRNA lincRNA MGP_CASTEiJ_T0020617.1 MGP_CASTEiJ_G0015665.1 mouse_genomes_project 1 92368878 92625716 - MGP_CASTEiJ_P0020617 Hdac4 protein_coding protein_coding MGP_CASTEiJ_T0020618.1 MGP_CASTEiJ_G0015665.1 mouse_genomes_project 1 92368878 92588967 - MGP_CASTEiJ_P0020618 Hdac4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020619.1 MGP_CASTEiJ_G0015665.1 mouse_genomes_project 1 92372847 92589083 - MGP_CASTEiJ_P0020619 Hdac4 protein_coding protein_coding MGP_CASTEiJ_T0020620.1 MGP_CASTEiJ_G0015665.1 mouse_genomes_project 1 92373047 92448750 - Hdac4 protein_coding processed_transcript MGP_CASTEiJ_T0020621.1 MGP_CASTEiJ_G0015665.1 mouse_genomes_project 1 92373293 92374952 - Hdac4 protein_coding retained_intron MGP_CASTEiJ_T0020622.1 MGP_CASTEiJ_G0015665.1 mouse_genomes_project 1 92395488 92415646 - MGP_CASTEiJ_P0020622 Hdac4 protein_coding protein_coding MGP_CASTEiJ_T0020623.1 MGP_CASTEiJ_G0015665.1 mouse_genomes_project 1 92429273 92434555 - Hdac4 protein_coding retained_intron MGP_CASTEiJ_T0020624.1 MGP_CASTEiJ_G0015665.1 mouse_genomes_project 1 92445566 92448755 - Hdac4 protein_coding retained_intron MGP_CASTEiJ_T0020625.1 MGP_CASTEiJ_G0015665.1 mouse_genomes_project 1 92470949 92625672 - MGP_CASTEiJ_P0020625 Hdac4 protein_coding protein_coding MGP_CASTEiJ_T0020626.1 MGP_CASTEiJ_G0015665.1 mouse_genomes_project 1 92470960 92552476 - Hdac4 protein_coding processed_transcript MGP_CASTEiJ_T0020627.1 MGP_CASTEiJ_G0015665.1 mouse_genomes_project 1 92471044 92552476 - Hdac4 protein_coding processed_transcript MGP_CASTEiJ_T0018059.1 MGP_CASTEiJ_G0015172.1 mouse_genomes_project 1 3770619 4160804 + MGP_CASTEiJ_P0018059 St18 protein_coding protein_coding MGP_CASTEiJ_T0018060.1 MGP_CASTEiJ_G0015172.1 mouse_genomes_project 1 3770719 4160810 + MGP_CASTEiJ_P0018060 St18 protein_coding protein_coding MGP_CASTEiJ_T0018061.1 MGP_CASTEiJ_G0015172.1 mouse_genomes_project 1 4012968 4160810 + MGP_CASTEiJ_P0018061 St18 protein_coding protein_coding MGP_CASTEiJ_T0018062.1 MGP_CASTEiJ_G0015172.1 mouse_genomes_project 1 4012970 4084096 + MGP_CASTEiJ_P0018062 St18 protein_coding protein_coding MGP_CASTEiJ_T0018063.1 MGP_CASTEiJ_G0015172.1 mouse_genomes_project 1 4012987 4084221 + MGP_CASTEiJ_P0018063 St18 protein_coding protein_coding MGP_CASTEiJ_T0018064.1 MGP_CASTEiJ_G0015172.1 mouse_genomes_project 1 4013018 4159343 + MGP_CASTEiJ_P0018064 St18 protein_coding protein_coding MGP_CASTEiJ_T0018065.1 MGP_CASTEiJ_G0015172.1 mouse_genomes_project 1 4013019 4158686 + MGP_CASTEiJ_P0018065 St18 protein_coding protein_coding MGP_CASTEiJ_T0018066.1 MGP_CASTEiJ_G0015172.1 mouse_genomes_project 1 4018692 4092494 + MGP_CASTEiJ_P0018066 St18 protein_coding protein_coding MGP_CASTEiJ_T0018067.1 MGP_CASTEiJ_G0015172.1 mouse_genomes_project 1 4021394 4160810 + MGP_CASTEiJ_P0018067 St18 protein_coding protein_coding MGP_CASTEiJ_T0018068.1 MGP_CASTEiJ_G0015172.1 mouse_genomes_project 1 4092596 4099190 + MGP_CASTEiJ_P0018068 St18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018069.1 MGP_CASTEiJ_G0015172.1 mouse_genomes_project 1 4108396 4127792 + St18 protein_coding processed_transcript MGP_CASTEiJ_T0018070.1 MGP_CASTEiJ_G0015172.1 mouse_genomes_project 1 4122071 4144919 + St18 protein_coding processed_transcript MGP_CASTEiJ_T0018071.1 MGP_CASTEiJ_G0015172.1 mouse_genomes_project 1 4155444 4159477 + MGP_CASTEiJ_P0018071 St18 protein_coding protein_coding MGP_CASTEiJ_T0018687.1 MGP_CASTEiJ_G0015292.1 mouse_genomes_project 1 35829959 35843396 - MGP_CASTEiJ_P0018687 2010300C02Rik protein_coding protein_coding MGP_CASTEiJ_T0018688.1 MGP_CASTEiJ_G0015292.1 mouse_genomes_project 1 35829959 35941037 - MGP_CASTEiJ_P0018688 2010300C02Rik protein_coding protein_coding MGP_CASTEiJ_T0018689.1 MGP_CASTEiJ_G0015292.1 mouse_genomes_project 1 35856030 35940747 - MGP_CASTEiJ_P0018689 2010300C02Rik protein_coding protein_coding MGP_CASTEiJ_T0019179.1 MGP_CASTEiJ_G0015391.1 mouse_genomes_project 1 56225836 56233546 + MGP_CASTEiJ_P0019179 1700066M21Rik protein_coding protein_coding MGP_CASTEiJ_T0019180.1 MGP_CASTEiJ_G0015391.1 mouse_genomes_project 1 56225849 56228383 + 1700066M21Rik protein_coding processed_transcript MGP_CASTEiJ_T0019181.1 MGP_CASTEiJ_G0015391.1 mouse_genomes_project 1 56225856 56228299 + 1700066M21Rik protein_coding processed_transcript MGP_CASTEiJ_T0019643.1 MGP_CASTEiJ_G0015475.1 mouse_genomes_project 1 69212219 69656688 + Spag16 protein_coding processed_transcript MGP_CASTEiJ_T0019644.1 MGP_CASTEiJ_G0015475.1 mouse_genomes_project 1 69212220 69656589 + Spag16 protein_coding processed_transcript MGP_CASTEiJ_T0019645.1 MGP_CASTEiJ_G0015475.1 mouse_genomes_project 1 69212237 70159136 + MGP_CASTEiJ_P0019645 Spag16 protein_coding protein_coding MGP_CASTEiJ_T0019646.1 MGP_CASTEiJ_G0015475.1 mouse_genomes_project 1 69212241 69306635 + MGP_CASTEiJ_P0019646 Spag16 protein_coding protein_coding MGP_CASTEiJ_T0019647.1 MGP_CASTEiJ_G0015475.1 mouse_genomes_project 1 69217042 69256719 + Spag16 protein_coding processed_transcript MGP_CASTEiJ_T0019648.1 MGP_CASTEiJ_G0015475.1 mouse_genomes_project 1 69327194 70159136 + Spag16 protein_coding processed_transcript MGP_CASTEiJ_T0019649.1 MGP_CASTEiJ_G0015475.1 mouse_genomes_project 1 69327221 69671328 + Spag16 protein_coding processed_transcript MGP_CASTEiJ_T0000504.1 MGP_CASTEiJ_G0000450.1 mouse_genomes_project 1 83336348 83337607 - TEC TEC MGP_CASTEiJ_T0018243.1 MGP_CASTEiJ_G0015202.1 mouse_genomes_project 1 13249140 13286472 + MGP_CASTEiJ_P0018243 Terf1 protein_coding protein_coding MGP_CASTEiJ_T0018244.1 MGP_CASTEiJ_G0015202.1 mouse_genomes_project 1 13249151 13265539 + Terf1 protein_coding processed_transcript MGP_CASTEiJ_T0018245.1 MGP_CASTEiJ_G0015202.1 mouse_genomes_project 1 13249158 13285891 + MGP_CASTEiJ_P0018245 Terf1 protein_coding protein_coding MGP_CASTEiJ_T0018246.1 MGP_CASTEiJ_G0015202.1 mouse_genomes_project 1 13251128 13265628 + Terf1 protein_coding retained_intron MGP_CASTEiJ_T0022156.1 MGP_CASTEiJ_G0015978.1 mouse_genomes_project 1 160384275 160418093 + MGP_CASTEiJ_P0022156 BC026585 protein_coding protein_coding MGP_CASTEiJ_T0022157.1 MGP_CASTEiJ_G0015978.1 mouse_genomes_project 1 160384294 160418539 + MGP_CASTEiJ_P0022157 BC026585 protein_coding protein_coding MGP_CASTEiJ_T0022158.1 MGP_CASTEiJ_G0015978.1 mouse_genomes_project 1 160387743 160396797 + MGP_CASTEiJ_P0022158 BC026585 protein_coding protein_coding MGP_CASTEiJ_T0022159.1 MGP_CASTEiJ_G0015978.1 mouse_genomes_project 1 160398378 160422119 + MGP_CASTEiJ_P0022159 BC026585 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022293.1 MGP_CASTEiJ_G0015998.1 mouse_genomes_project 1 164590411 164614714 + MGP_CASTEiJ_P0022293 Tnfsf4 protein_coding protein_coding MGP_CASTEiJ_T0011760.1 MGP_CASTEiJ_G0009923.1 mouse_genomes_project 1 64684041 64684352 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018731.1 MGP_CASTEiJ_G0015301.1 mouse_genomes_project 1 36281915 36365055 - MGP_CASTEiJ_P0018731 Rev1 protein_coding protein_coding MGP_CASTEiJ_T0018732.1 MGP_CASTEiJ_G0015301.1 mouse_genomes_project 1 36281925 36323633 - Rev1 protein_coding retained_intron MGP_CASTEiJ_T0018733.1 MGP_CASTEiJ_G0015301.1 mouse_genomes_project 1 36282429 36283380 - Rev1 protein_coding retained_intron MGP_CASTEiJ_T0018734.1 MGP_CASTEiJ_G0015301.1 mouse_genomes_project 1 36285648 36286832 - Rev1 protein_coding retained_intron MGP_CASTEiJ_T0018735.1 MGP_CASTEiJ_G0015301.1 mouse_genomes_project 1 36298729 36315972 - MGP_CASTEiJ_P0018735 Rev1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018736.1 MGP_CASTEiJ_G0015301.1 mouse_genomes_project 1 36302497 36317843 - MGP_CASTEiJ_P0018736 Rev1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018737.1 MGP_CASTEiJ_G0015301.1 mouse_genomes_project 1 36305685 36313550 - Rev1 protein_coding processed_transcript MGP_CASTEiJ_T0018738.1 MGP_CASTEiJ_G0015301.1 mouse_genomes_project 1 36311266 36316038 - Rev1 protein_coding retained_intron MGP_CASTEiJ_T0018739.1 MGP_CASTEiJ_G0015301.1 mouse_genomes_project 1 36329082 36363694 - MGP_CASTEiJ_P0018739 Rev1 protein_coding protein_coding MGP_CASTEiJ_T0018740.1 MGP_CASTEiJ_G0015301.1 mouse_genomes_project 1 36334310 36363710 - MGP_CASTEiJ_P0018740 Rev1 protein_coding protein_coding MGP_CASTEiJ_T0018741.1 MGP_CASTEiJ_G0015301.1 mouse_genomes_project 1 36343078 36365194 - MGP_CASTEiJ_P0018741 Rev1 protein_coding protein_coding MGP_CASTEiJ_T0005669.1 MGP_CASTEiJ_G0004766.1 mouse_genomes_project 1 89317999 89326662 + 1700067G17Rik lincRNA lincRNA MGP_CASTEiJ_T0002712.1 MGP_CASTEiJ_G0002583.1 mouse_genomes_project 1 58457691 58476209 - Gm28411 antisense antisense MGP_CASTEiJ_T0002714.1 MGP_CASTEiJ_G0002583.1 mouse_genomes_project 1 58468114 58476942 - Gm28411 antisense antisense MGP_CASTEiJ_T0000407.1 MGP_CASTEiJ_G0000353.1 mouse_genomes_project 1 32267818 32270043 + TEC TEC MGP_CASTEiJ_T0000545.1 MGP_CASTEiJ_G0000491.1 mouse_genomes_project 1 106266171 106270522 + TEC TEC MGP_CASTEiJ_T0002771.1 MGP_CASTEiJ_G0002626.1 mouse_genomes_project 1 122372677 122376591 - Gm15392 antisense antisense MGP_CASTEiJ_T0022614.1 MGP_CASTEiJ_G0016070.1 mouse_genomes_project 1 173599198 173636320 - MGP_CASTEiJ_P0022614 Uap1 protein_coding protein_coding MGP_CASTEiJ_T0022615.1 MGP_CASTEiJ_G0016070.1 mouse_genomes_project 1 173599263 173636309 - MGP_CASTEiJ_P0022615 Uap1 protein_coding protein_coding MGP_CASTEiJ_T0022616.1 MGP_CASTEiJ_G0016070.1 mouse_genomes_project 1 173599264 173636309 - MGP_CASTEiJ_P0022616 Uap1 protein_coding protein_coding MGP_CASTEiJ_T0022617.1 MGP_CASTEiJ_G0016070.1 mouse_genomes_project 1 173599295 173600975 - Uap1 protein_coding retained_intron MGP_CASTEiJ_T0022618.1 MGP_CASTEiJ_G0016070.1 mouse_genomes_project 1 173606971 173636155 - Uap1 protein_coding retained_intron MGP_CASTEiJ_T0022619.1 MGP_CASTEiJ_G0016070.1 mouse_genomes_project 1 173619282 173619858 - Uap1 protein_coding processed_transcript MGP_CASTEiJ_T0022620.1 MGP_CASTEiJ_G0016070.1 mouse_genomes_project 1 173619300 173636129 - Uap1 protein_coding processed_transcript MGP_CASTEiJ_T0022621.1 MGP_CASTEiJ_G0016070.1 mouse_genomes_project 1 173624242 173636152 - Uap1 protein_coding retained_intron MGP_CASTEiJ_T0022622.1 MGP_CASTEiJ_G0016070.1 mouse_genomes_project 1 173627231 173636249 - Uap1 protein_coding processed_transcript MGP_CASTEiJ_T0021305.1 MGP_CASTEiJ_G0015814.1 mouse_genomes_project 1 133443770 133492519 - MGP_CASTEiJ_P0021305 Mfsd4a protein_coding protein_coding MGP_CASTEiJ_T0021306.1 MGP_CASTEiJ_G0015814.1 mouse_genomes_project 1 133444214 133451311 - Mfsd4a protein_coding retained_intron MGP_CASTEiJ_T0021307.1 MGP_CASTEiJ_G0015814.1 mouse_genomes_project 1 133447594 133492573 - MGP_CASTEiJ_P0021307 Mfsd4a protein_coding protein_coding MGP_CASTEiJ_T0021308.1 MGP_CASTEiJ_G0015814.1 mouse_genomes_project 1 133448881 133492434 - MGP_CASTEiJ_P0021308 Mfsd4a protein_coding protein_coding MGP_CASTEiJ_T0021309.1 MGP_CASTEiJ_G0015814.1 mouse_genomes_project 1 133448881 133492571 - MGP_CASTEiJ_P0021309 Mfsd4a protein_coding protein_coding MGP_CASTEiJ_T0021310.1 MGP_CASTEiJ_G0015814.1 mouse_genomes_project 1 133448899 133492670 - MGP_CASTEiJ_P0021310 Mfsd4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021311.1 MGP_CASTEiJ_G0015814.1 mouse_genomes_project 1 133460285 133492639 - MGP_CASTEiJ_P0021311 Mfsd4a protein_coding unknown_likely_coding MGP_CASTEiJ_T0021312.1 MGP_CASTEiJ_G0015814.1 mouse_genomes_project 1 133460285 133492500 - MGP_CASTEiJ_P0021312 Mfsd4a protein_coding protein_coding MGP_CASTEiJ_T0021313.1 MGP_CASTEiJ_G0015814.1 mouse_genomes_project 1 133460294 133492541 - MGP_CASTEiJ_P0021313 Mfsd4a protein_coding protein_coding MGP_CASTEiJ_T0021314.1 MGP_CASTEiJ_G0015814.1 mouse_genomes_project 1 133462318 133465380 - Mfsd4a protein_coding processed_transcript MGP_CASTEiJ_T0021315.1 MGP_CASTEiJ_G0015814.1 mouse_genomes_project 1 133462422 133492508 - MGP_CASTEiJ_P0021315 Mfsd4a protein_coding protein_coding MGP_CASTEiJ_T0021316.1 MGP_CASTEiJ_G0015814.1 mouse_genomes_project 1 133464136 133470088 - Mfsd4a protein_coding retained_intron MGP_CASTEiJ_T0021317.1 MGP_CASTEiJ_G0015814.1 mouse_genomes_project 1 133469965 133478736 - MGP_CASTEiJ_P0021317 Mfsd4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000437.1 MGP_CASTEiJ_G0000383.1 mouse_genomes_project 1 52873682 52877426 - TEC TEC MGP_CASTEiJ_T0002751.1 MGP_CASTEiJ_G0002612.1 mouse_genomes_project 1 93033790 93034166 - 1700054K02Rik antisense antisense MGP_CASTEiJ_T0000609.1 MGP_CASTEiJ_G0000554.1 mouse_genomes_project 1 139088979 139090918 + TEC TEC MGP_CASTEiJ_T0099130.1 MGP_CASTEiJ_G0036043.1 mouse_genomes_project 1 166651419 166651527 + Gm24940 snRNA snRNA MGP_CASTEiJ_T0019666.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71041781 71114213 - MGP_CASTEiJ_P0019666 Fn1 protein_coding protein_coding MGP_CASTEiJ_T0019667.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71041784 71114213 - MGP_CASTEiJ_P0019667 Fn1 protein_coding protein_coding MGP_CASTEiJ_T0019668.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71041784 71114213 - MGP_CASTEiJ_P0019668 Fn1 protein_coding protein_coding MGP_CASTEiJ_T0019669.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71041784 71114213 - MGP_CASTEiJ_P0019669 Fn1 protein_coding protein_coding MGP_CASTEiJ_T0019670.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71041785 71114213 - MGP_CASTEiJ_P0019670 Fn1 protein_coding protein_coding MGP_CASTEiJ_T0019671.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71041785 71114216 - MGP_CASTEiJ_P0019671 Fn1 protein_coding protein_coding MGP_CASTEiJ_T0019672.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71041785 71114241 - MGP_CASTEiJ_P0019672 Fn1 protein_coding protein_coding MGP_CASTEiJ_T0019673.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71041787 71069650 - Fn1 protein_coding retained_intron MGP_CASTEiJ_T0019674.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71043125 71047373 - Fn1 protein_coding retained_intron MGP_CASTEiJ_T0019675.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71046390 71058672 - MGP_CASTEiJ_P0019675 Fn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019676.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71056661 71060654 - MGP_CASTEiJ_P0019676 Fn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019677.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71058690 71061124 - Fn1 protein_coding retained_intron MGP_CASTEiJ_T0019678.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71062377 71084407 - Fn1 protein_coding retained_intron MGP_CASTEiJ_T0019679.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71089350 71102491 - MGP_CASTEiJ_P0019679 Fn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019680.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71104033 71114202 - MGP_CASTEiJ_P0019680 Fn1 protein_coding protein_coding MGP_CASTEiJ_T0019681.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71105659 71114213 - Fn1 protein_coding retained_intron MGP_CASTEiJ_T0019682.1 MGP_CASTEiJ_G0015480.1 mouse_genomes_project 1 71106659 71114213 - MGP_CASTEiJ_P0019682 Fn1 protein_coding protein_coding MGP_CASTEiJ_T0021476.1 MGP_CASTEiJ_G0015849.1 mouse_genomes_project 1 135761750 135769466 + MGP_CASTEiJ_P0021476 Mybph protein_coding protein_coding MGP_CASTEiJ_T0021477.1 MGP_CASTEiJ_G0015849.1 mouse_genomes_project 1 135761759 135769467 + MGP_CASTEiJ_P0021477 Mybph protein_coding protein_coding MGP_CASTEiJ_T0005679.1 MGP_CASTEiJ_G0004776.1 mouse_genomes_project 1 91902561 91904334 + Gm28382 lincRNA lincRNA MGP_CASTEiJ_T0005783.1 MGP_CASTEiJ_G0004862.1 mouse_genomes_project 1 156846966 156934516 - A830008E24Rik lincRNA lincRNA MGP_CASTEiJ_T0005784.1 MGP_CASTEiJ_G0004862.1 mouse_genomes_project 1 156857491 156936349 - A830008E24Rik lincRNA lincRNA MGP_CASTEiJ_T0002871.1 MGP_CASTEiJ_G0002705.1 mouse_genomes_project 1 189906933 189908563 + 2010103J01Rik antisense antisense MGP_CASTEiJ_T0019311.1 MGP_CASTEiJ_G0015414.1 mouse_genomes_project 1 57977924 57995654 - MGP_CASTEiJ_P0019311 Tmem237 protein_coding protein_coding MGP_CASTEiJ_T0019312.1 MGP_CASTEiJ_G0015414.1 mouse_genomes_project 1 57977931 57995365 - MGP_CASTEiJ_P0019312 Tmem237 protein_coding protein_coding MGP_CASTEiJ_T0019313.1 MGP_CASTEiJ_G0015414.1 mouse_genomes_project 1 57978245 57995942 - MGP_CASTEiJ_P0019313 Tmem237 protein_coding protein_coding MGP_CASTEiJ_T0019314.1 MGP_CASTEiJ_G0015414.1 mouse_genomes_project 1 57984236 57995672 - MGP_CASTEiJ_P0019314 Tmem237 protein_coding protein_coding MGP_CASTEiJ_T0019315.1 MGP_CASTEiJ_G0015414.1 mouse_genomes_project 1 57984825 57989891 - Tmem237 protein_coding retained_intron MGP_CASTEiJ_T0019316.1 MGP_CASTEiJ_G0015414.1 mouse_genomes_project 1 57985129 57995968 - MGP_CASTEiJ_P0019316 Tmem237 protein_coding protein_coding MGP_CASTEiJ_T0019317.1 MGP_CASTEiJ_G0015414.1 mouse_genomes_project 1 57985889 57991533 - Tmem237 protein_coding retained_intron MGP_CASTEiJ_T0020190.1 MGP_CASTEiJ_G0015574.1 mouse_genomes_project 1 82786847 82863839 + MGP_CASTEiJ_P0020190 Agfg1 protein_coding protein_coding MGP_CASTEiJ_T0020191.1 MGP_CASTEiJ_G0015574.1 mouse_genomes_project 1 82786861 82859041 + MGP_CASTEiJ_P0020191 Agfg1 protein_coding protein_coding MGP_CASTEiJ_T0020192.1 MGP_CASTEiJ_G0015574.1 mouse_genomes_project 1 82787040 82859041 + MGP_CASTEiJ_P0020192 Agfg1 protein_coding protein_coding MGP_CASTEiJ_T0020193.1 MGP_CASTEiJ_G0015574.1 mouse_genomes_project 1 82787045 82858335 + MGP_CASTEiJ_P0020193 Agfg1 protein_coding protein_coding MGP_CASTEiJ_T0020194.1 MGP_CASTEiJ_G0015574.1 mouse_genomes_project 1 82787045 82858181 + MGP_CASTEiJ_P0020194 Agfg1 protein_coding protein_coding MGP_CASTEiJ_T0020195.1 MGP_CASTEiJ_G0015574.1 mouse_genomes_project 1 82787054 82857879 + MGP_CASTEiJ_P0020195 Agfg1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0020196.1 MGP_CASTEiJ_G0015574.1 mouse_genomes_project 1 82787094 82862988 + MGP_CASTEiJ_P0020196 Agfg1 protein_coding protein_coding MGP_CASTEiJ_T0020197.1 MGP_CASTEiJ_G0015574.1 mouse_genomes_project 1 82787105 82857782 + MGP_CASTEiJ_P0020197 Agfg1 protein_coding protein_coding MGP_CASTEiJ_T0020198.1 MGP_CASTEiJ_G0015574.1 mouse_genomes_project 1 82787444 82842701 + MGP_CASTEiJ_P0020198 Agfg1 protein_coding protein_coding MGP_CASTEiJ_T0021968.1 MGP_CASTEiJ_G0015944.1 mouse_genomes_project 1 156273703 156325880 - MGP_CASTEiJ_P0021968 Npl protein_coding protein_coding MGP_CASTEiJ_T0021969.1 MGP_CASTEiJ_G0015944.1 mouse_genomes_project 1 156324253 156325547 - Npl protein_coding retained_intron MGP_CASTEiJ_T0099085.1 MGP_CASTEiJ_G0035998.1 mouse_genomes_project 1 52592434 52592548 - Gm24251 snRNA snRNA MGP_CASTEiJ_T0002867.1 MGP_CASTEiJ_G0002702.1 mouse_genomes_project 1 186942791 186951082 + Gm37885 antisense antisense MGP_CASTEiJ_T0002868.1 MGP_CASTEiJ_G0002702.1 mouse_genomes_project 1 186948637 186950210 + Gm37885 antisense antisense MGP_CASTEiJ_T0100314.1 MGP_CASTEiJ_G0037227.1 mouse_genomes_project 1 139196000 139196097 - Gm23534 snoRNA snoRNA MGP_CASTEiJ_T0018380.1 MGP_CASTEiJ_G0015237.1 mouse_genomes_project 1 21730565 21740242 - MGP_CASTEiJ_P0018380 Sdhaf4 protein_coding protein_coding MGP_CASTEiJ_T0018381.1 MGP_CASTEiJ_G0015237.1 mouse_genomes_project 1 21737545 21740216 - Sdhaf4 protein_coding processed_transcript MGP_CASTEiJ_T0010924.1 MGP_CASTEiJ_G0009112.1 mouse_genomes_project 1 98418506 98418818 + Gm25413 misc_RNA misc_RNA MGP_CASTEiJ_T0011592.1 MGP_CASTEiJ_G0009755.1 mouse_genomes_project 1 10827472 10828105 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000458.1 MGP_CASTEiJ_G0000404.1 mouse_genomes_project 1 60749819 60751162 + TEC TEC MGP_CASTEiJ_T0020537.1 MGP_CASTEiJ_G0015650.1 mouse_genomes_project 1 91350770 91362313 - MGP_CASTEiJ_P0020537 Rab17 protein_coding protein_coding MGP_CASTEiJ_T0020538.1 MGP_CASTEiJ_G0015650.1 mouse_genomes_project 1 91350772 91360376 - MGP_CASTEiJ_P0020538 Rab17 protein_coding protein_coding MGP_CASTEiJ_T0020539.1 MGP_CASTEiJ_G0015650.1 mouse_genomes_project 1 91351372 91362200 - Rab17 protein_coding processed_transcript MGP_CASTEiJ_T0020540.1 MGP_CASTEiJ_G0015650.1 mouse_genomes_project 1 91351492 91360326 - Rab17 protein_coding processed_transcript MGP_CASTEiJ_T0020541.1 MGP_CASTEiJ_G0015650.1 mouse_genomes_project 1 91352621 91362296 - MGP_CASTEiJ_P0020541 Rab17 protein_coding protein_coding MGP_CASTEiJ_T0011733.1 MGP_CASTEiJ_G0009896.1 mouse_genomes_project 1 58920198 58924746 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0022035.1 MGP_CASTEiJ_G0015959.1 mouse_genomes_project 1 158130648 158276672 - MGP_CASTEiJ_P0022035 Xpr1 protein_coding protein_coding MGP_CASTEiJ_T0022036.1 MGP_CASTEiJ_G0015959.1 mouse_genomes_project 1 158133939 158276750 - MGP_CASTEiJ_P0022036 Xpr1 protein_coding protein_coding MGP_CASTEiJ_T0022037.1 MGP_CASTEiJ_G0015959.1 mouse_genomes_project 1 158137138 158166619 - Xpr1 protein_coding retained_intron MGP_CASTEiJ_T0022038.1 MGP_CASTEiJ_G0015959.1 mouse_genomes_project 1 158137625 158276758 - MGP_CASTEiJ_P0022038 Xpr1 protein_coding protein_coding MGP_CASTEiJ_T0022039.1 MGP_CASTEiJ_G0015959.1 mouse_genomes_project 1 158144253 158147360 - Xpr1 protein_coding retained_intron MGP_CASTEiJ_T0022040.1 MGP_CASTEiJ_G0015959.1 mouse_genomes_project 1 158180185 158276738 - Xpr1 protein_coding retained_intron MGP_CASTEiJ_T0022041.1 MGP_CASTEiJ_G0015959.1 mouse_genomes_project 1 158240091 158243159 - Xpr1 protein_coding processed_transcript MGP_CASTEiJ_T0099108.1 MGP_CASTEiJ_G0036021.1 mouse_genomes_project 1 119174244 119174369 - Gm22710 snRNA snRNA MGP_CASTEiJ_T0019163.1 MGP_CASTEiJ_G0015387.1 mouse_genomes_project 1 54033777 54088066 - MGP_CASTEiJ_P0019163 Boll protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019164.1 MGP_CASTEiJ_G0015387.1 mouse_genomes_project 1 54056245 54156288 - MGP_CASTEiJ_P0019164 Boll protein_coding protein_coding MGP_CASTEiJ_T0019165.1 MGP_CASTEiJ_G0015387.1 mouse_genomes_project 1 54087956 54158849 - MGP_CASTEiJ_P0019165 Boll protein_coding protein_coding MGP_CASTEiJ_T0019166.1 MGP_CASTEiJ_G0015387.1 mouse_genomes_project 1 54087956 54158256 - MGP_CASTEiJ_P0019166 Boll protein_coding protein_coding MGP_CASTEiJ_T0019167.1 MGP_CASTEiJ_G0015387.1 mouse_genomes_project 1 54087956 54158849 - MGP_CASTEiJ_P0019167 Boll protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019168.1 MGP_CASTEiJ_G0015387.1 mouse_genomes_project 1 54141008 54158999 - MGP_CASTEiJ_P0019168 Boll protein_coding protein_coding MGP_CASTEiJ_T0019169.1 MGP_CASTEiJ_G0015387.1 mouse_genomes_project 1 54145186 54156288 - Boll protein_coding processed_transcript MGP_CASTEiJ_T0011790.1 MGP_CASTEiJ_G0009953.1 mouse_genomes_project 1 81457208 81461726 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000527.1 MGP_CASTEiJ_G0000473.1 mouse_genomes_project 1 90578805 90580166 - TEC TEC MGP_CASTEiJ_T0022705.1 MGP_CASTEiJ_G0016094.1 mouse_genomes_project 1 174770983 174771671 - Ndufs2 protein_coding retained_intron MGP_CASTEiJ_T0022706.1 MGP_CASTEiJ_G0016094.1 mouse_genomes_project 1 174770983 174784128 - Ndufs2 protein_coding retained_intron MGP_CASTEiJ_T0022707.1 MGP_CASTEiJ_G0016094.1 mouse_genomes_project 1 174770983 174773698 - Ndufs2 protein_coding processed_transcript MGP_CASTEiJ_T0022708.1 MGP_CASTEiJ_G0016094.1 mouse_genomes_project 1 174770983 174784128 - MGP_CASTEiJ_P0022708 Ndufs2 protein_coding protein_coding MGP_CASTEiJ_T0022709.1 MGP_CASTEiJ_G0016094.1 mouse_genomes_project 1 174770983 174784128 - MGP_CASTEiJ_P0022709 Ndufs2 protein_coding protein_coding MGP_CASTEiJ_T0022710.1 MGP_CASTEiJ_G0016094.1 mouse_genomes_project 1 174773314 174776231 - Ndufs2 protein_coding processed_transcript MGP_CASTEiJ_T0022711.1 MGP_CASTEiJ_G0016094.1 mouse_genomes_project 1 174774689 174789940 - MGP_CASTEiJ_P0022711 Ndufs2 protein_coding protein_coding MGP_CASTEiJ_T0022712.1 MGP_CASTEiJ_G0016094.1 mouse_genomes_project 1 174774907 174790077 - MGP_CASTEiJ_P0022712 Ndufs2 protein_coding protein_coding MGP_CASTEiJ_T0005796.1 MGP_CASTEiJ_G0004871.1 mouse_genomes_project 1 163154073 163156705 - Gm37294 lincRNA lincRNA MGP_CASTEiJ_T0009265.1 MGP_CASTEiJ_G0007453.1 mouse_genomes_project 1 82786810 82786863 + Gm22396 miRNA miRNA MGP_CASTEiJ_T0009239.1 MGP_CASTEiJ_G0007427.1 mouse_genomes_project 1 34830951 34831026 + Gm24133 miRNA miRNA MGP_CASTEiJ_T0002851.1 MGP_CASTEiJ_G0002688.1 mouse_genomes_project 1 175749103 175752038 - Gm37756 antisense antisense MGP_CASTEiJ_T0022902.1 MGP_CASTEiJ_G0016134.1 mouse_genomes_project 1 176184232 176191397 + Tagln2 protein_coding retained_intron MGP_CASTEiJ_T0022903.1 MGP_CASTEiJ_G0016134.1 mouse_genomes_project 1 176184232 176192829 + MGP_CASTEiJ_P0022903 Tagln2 protein_coding protein_coding MGP_CASTEiJ_T0022904.1 MGP_CASTEiJ_G0016134.1 mouse_genomes_project 1 176184430 176191315 + MGP_CASTEiJ_P0022904 Tagln2 protein_coding protein_coding MGP_CASTEiJ_T0022905.1 MGP_CASTEiJ_G0016134.1 mouse_genomes_project 1 176185437 176192208 + MGP_CASTEiJ_P0022905 Tagln2 protein_coding protein_coding MGP_CASTEiJ_T0023035.1 MGP_CASTEiJ_G0016188.1 mouse_genomes_project 1 180724203 180811971 - MGP_CASTEiJ_P0023035 Cep170 protein_coding protein_coding MGP_CASTEiJ_T0023036.1 MGP_CASTEiJ_G0016188.1 mouse_genomes_project 1 180724212 180818966 - MGP_CASTEiJ_P0023036 Cep170 protein_coding protein_coding MGP_CASTEiJ_T0023037.1 MGP_CASTEiJ_G0016188.1 mouse_genomes_project 1 180724213 180795980 - MGP_CASTEiJ_P0023037 Cep170 protein_coding protein_coding MGP_CASTEiJ_T0023038.1 MGP_CASTEiJ_G0016188.1 mouse_genomes_project 1 180724651 180744718 - Cep170 protein_coding retained_intron MGP_CASTEiJ_T0023039.1 MGP_CASTEiJ_G0016188.1 mouse_genomes_project 1 180724689 180751786 - MGP_CASTEiJ_P0023039 Cep170 protein_coding protein_coding MGP_CASTEiJ_T0023040.1 MGP_CASTEiJ_G0016188.1 mouse_genomes_project 1 180724888 180795990 - MGP_CASTEiJ_P0023040 Cep170 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023041.1 MGP_CASTEiJ_G0016188.1 mouse_genomes_project 1 180725697 180744367 - MGP_CASTEiJ_P0023041 Cep170 protein_coding protein_coding MGP_CASTEiJ_T0023042.1 MGP_CASTEiJ_G0016188.1 mouse_genomes_project 1 180726133 180748168 - Cep170 protein_coding processed_transcript MGP_CASTEiJ_T0023043.1 MGP_CASTEiJ_G0016188.1 mouse_genomes_project 1 180726229 180782087 - MGP_CASTEiJ_P0023043 Cep170 protein_coding protein_coding MGP_CASTEiJ_T0023044.1 MGP_CASTEiJ_G0016188.1 mouse_genomes_project 1 180734026 180736653 - Cep170 protein_coding retained_intron MGP_CASTEiJ_T0023045.1 MGP_CASTEiJ_G0016188.1 mouse_genomes_project 1 180769530 180776055 - Cep170 protein_coding retained_intron MGP_CASTEiJ_T0023046.1 MGP_CASTEiJ_G0016188.1 mouse_genomes_project 1 180771309 180781867 - MGP_CASTEiJ_P0023046 Cep170 protein_coding protein_coding MGP_CASTEiJ_T0023047.1 MGP_CASTEiJ_G0016188.1 mouse_genomes_project 1 180776189 180818966 - MGP_CASTEiJ_P0023047 Cep170 protein_coding protein_coding MGP_CASTEiJ_T0023048.1 MGP_CASTEiJ_G0016188.1 mouse_genomes_project 1 180788662 180811977 - Cep170 protein_coding retained_intron MGP_CASTEiJ_T0023049.1 MGP_CASTEiJ_G0016188.1 mouse_genomes_project 1 180788739 180811971 - MGP_CASTEiJ_P0023049 Cep170 protein_coding protein_coding MGP_CASTEiJ_T0020406.1 MGP_CASTEiJ_G0015616.1 mouse_genomes_project 1 87501267 87506504 + MGP_CASTEiJ_P0020406 3110079O15Rik protein_coding protein_coding MGP_CASTEiJ_T0020407.1 MGP_CASTEiJ_G0015616.1 mouse_genomes_project 1 87503534 87506480 + 3110079O15Rik protein_coding processed_transcript MGP_CASTEiJ_T0021265.1 MGP_CASTEiJ_G0015803.1 mouse_genomes_project 1 132923493 132935513 + MGP_CASTEiJ_P0021265 Fam72a protein_coding protein_coding MGP_CASTEiJ_T0019778.1 MGP_CASTEiJ_G0015503.1 mouse_genomes_project 1 74033300 74037576 + MGP_CASTEiJ_P0019778 protein_coding unknown_likely_coding MGP_CASTEiJ_T0019779.1 MGP_CASTEiJ_G0015503.1 mouse_genomes_project 1 74033590 74035515 + MGP_CASTEiJ_P0019779 protein_coding protein_coding MGP_CASTEiJ_T0000652.1 MGP_CASTEiJ_G0000596.1 mouse_genomes_project 1 156687553 156690104 - TEC TEC MGP_CASTEiJ_T0019860.1 MGP_CASTEiJ_G0015518.1 mouse_genomes_project 1 74548592 74552498 - MGP_CASTEiJ_P0019860 Fev protein_coding protein_coding MGP_CASTEiJ_T0019861.1 MGP_CASTEiJ_G0015518.1 mouse_genomes_project 1 74549089 74552401 - MGP_CASTEiJ_P0019861 Fev protein_coding protein_coding MGP_CASTEiJ_T0019862.1 MGP_CASTEiJ_G0015518.1 mouse_genomes_project 1 74549490 74551690 - Fev protein_coding retained_intron MGP_CASTEiJ_T0022821.1 MGP_CASTEiJ_G0016118.1 mouse_genomes_project 1 175646202 175680978 - MGP_CASTEiJ_P0022821 Vangl2 protein_coding protein_coding MGP_CASTEiJ_T0022822.1 MGP_CASTEiJ_G0016118.1 mouse_genomes_project 1 175646202 175679822 - MGP_CASTEiJ_P0022822 Vangl2 protein_coding protein_coding MGP_CASTEiJ_T0022823.1 MGP_CASTEiJ_G0016118.1 mouse_genomes_project 1 175650623 175679822 - MGP_CASTEiJ_P0022823 Vangl2 protein_coding protein_coding MGP_CASTEiJ_T0022824.1 MGP_CASTEiJ_G0016118.1 mouse_genomes_project 1 175650965 175655169 - Vangl2 protein_coding processed_transcript MGP_CASTEiJ_T0022825.1 MGP_CASTEiJ_G0016118.1 mouse_genomes_project 1 175655733 175679204 - MGP_CASTEiJ_P0022825 Vangl2 protein_coding protein_coding MGP_CASTEiJ_T0022826.1 MGP_CASTEiJ_G0016118.1 mouse_genomes_project 1 175655816 175679795 - MGP_CASTEiJ_P0022826 Vangl2 protein_coding protein_coding MGP_CASTEiJ_T0100270.1 MGP_CASTEiJ_G0037183.1 mouse_genomes_project 1 44359137 44359268 + Gm23974 snoRNA snoRNA MGP_CASTEiJ_T0002663.1 MGP_CASTEiJ_G0002545.1 mouse_genomes_project 1 15145117 15189686 - Gm16070 antisense antisense MGP_CASTEiJ_T0002664.1 MGP_CASTEiJ_G0002545.1 mouse_genomes_project 1 15160684 15190048 - Gm16070 antisense antisense MGP_CASTEiJ_T0002665.1 MGP_CASTEiJ_G0002545.1 mouse_genomes_project 1 15187384 15189657 - Gm16070 antisense antisense MGP_CASTEiJ_T0000583.1 MGP_CASTEiJ_G0000529.1 mouse_genomes_project 1 130684419 130685381 + TEC TEC MGP_CASTEiJ_T0011935.1 MGP_CASTEiJ_G0010098.1 mouse_genomes_project 1 151478028 151482044 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019870.1 MGP_CASTEiJ_G0015522.1 mouse_genomes_project 1 74639103 74726547 - MGP_CASTEiJ_P0019870 Nhej1 protein_coding protein_coding MGP_CASTEiJ_T0019871.1 MGP_CASTEiJ_G0015522.1 mouse_genomes_project 1 74639658 74740558 - MGP_CASTEiJ_P0019871 Nhej1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0019872.1 MGP_CASTEiJ_G0015522.1 mouse_genomes_project 1 74740452 74740517 - Nhej1 protein_coding processed_transcript MGP_CASTEiJ_T0011554.1 MGP_CASTEiJ_G0009717.1 mouse_genomes_project 1 2016162 2017081 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000379.1 MGP_CASTEiJ_G0000326.1 mouse_genomes_project 1 23362944 23366613 - TEC TEC MGP_CASTEiJ_T0023367.1 MGP_CASTEiJ_G0016256.1 mouse_genomes_project 1 189454997 189571598 - MGP_CASTEiJ_P0023367 Mark1 protein_coding protein_coding MGP_CASTEiJ_T0023368.1 MGP_CASTEiJ_G0016256.1 mouse_genomes_project 1 189456433 189571531 - MGP_CASTEiJ_P0023368 Mark1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023369.1 MGP_CASTEiJ_G0016256.1 mouse_genomes_project 1 189481070 189571503 - MGP_CASTEiJ_P0023369 Mark1 protein_coding protein_coding MGP_CASTEiJ_T0018291.1 MGP_CASTEiJ_G0015210.1 mouse_genomes_project 1 14133796 14148323 + MGP_CASTEiJ_P0018291 Tmem70 protein_coding protein_coding MGP_CASTEiJ_T0018292.1 MGP_CASTEiJ_G0015210.1 mouse_genomes_project 1 14133799 14147172 + Tmem70 protein_coding processed_transcript MGP_CASTEiJ_T0018293.1 MGP_CASTEiJ_G0015210.1 mouse_genomes_project 1 14133799 14148403 + MGP_CASTEiJ_P0018293 Tmem70 protein_coding protein_coding MGP_CASTEiJ_T0018294.1 MGP_CASTEiJ_G0015210.1 mouse_genomes_project 1 14133825 14134401 + Tmem70 protein_coding processed_transcript MGP_CASTEiJ_T0000572.1 MGP_CASTEiJ_G0000518.1 mouse_genomes_project 1 127203599 127204864 - TEC TEC MGP_CASTEiJ_T0005664.1 MGP_CASTEiJ_G0004762.1 mouse_genomes_project 1 88809012 88820978 + Gm19589 lincRNA lincRNA MGP_CASTEiJ_T0099104.1 MGP_CASTEiJ_G0036017.1 mouse_genomes_project 1 98539172 98539279 + Gm24465 snRNA snRNA MGP_CASTEiJ_T0009237.1 MGP_CASTEiJ_G0007425.1 mouse_genomes_project 1 34498471 34498548 - Mir6898 miRNA miRNA MGP_CASTEiJ_T0009233.1 MGP_CASTEiJ_G0007421.1 mouse_genomes_project 1 27893804 27893914 + Gm23771 miRNA miRNA MGP_CASTEiJ_T0011813.1 MGP_CASTEiJ_G0009976.1 mouse_genomes_project 1 91907309 91909582 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002807.1 MGP_CASTEiJ_G0002654.1 mouse_genomes_project 1 153153589 153199695 + antisense antisense MGP_CASTEiJ_T0020329.1 MGP_CASTEiJ_G0015600.1 mouse_genomes_project 1 86494944 86498473 + MGP_CASTEiJ_P0020329 protein_coding protein_coding MGP_CASTEiJ_T0020330.1 MGP_CASTEiJ_G0015600.1 mouse_genomes_project 1 86494955 86497643 + MGP_CASTEiJ_P0020330 protein_coding protein_coding MGP_CASTEiJ_T0020331.1 MGP_CASTEiJ_G0015600.1 mouse_genomes_project 1 86494959 86497861 + protein_coding processed_transcript MGP_CASTEiJ_T0018433.1 MGP_CASTEiJ_G0015247.1 mouse_genomes_project 1 29058021 29154014 - MGP_CASTEiJ_P0018433 4931428L18Rik protein_coding protein_coding MGP_CASTEiJ_T0018434.1 MGP_CASTEiJ_G0015247.1 mouse_genomes_project 1 29064496 29154074 - MGP_CASTEiJ_P0018434 4931428L18Rik protein_coding protein_coding MGP_CASTEiJ_T0018435.1 MGP_CASTEiJ_G0015247.1 mouse_genomes_project 1 29065049 29154045 - MGP_CASTEiJ_P0018435 4931428L18Rik protein_coding protein_coding MGP_CASTEiJ_T0018438.1 MGP_CASTEiJ_G0015247.1 mouse_genomes_project 1 29136145 29154101 - MGP_CASTEiJ_P0018438 4931428L18Rik protein_coding protein_coding MGP_CASTEiJ_T0000452.1 MGP_CASTEiJ_G0000398.1 mouse_genomes_project 1 59799662 59804291 + TEC TEC MGP_CASTEiJ_T0000457.1 MGP_CASTEiJ_G0000403.1 mouse_genomes_project 1 60722160 60725127 + TEC TEC MGP_CASTEiJ_T0005527.1 MGP_CASTEiJ_G0004663.1 mouse_genomes_project 1 32529283 32537969 - 4930568A12Rik lincRNA lincRNA MGP_CASTEiJ_T0005528.1 MGP_CASTEiJ_G0004663.1 mouse_genomes_project 1 32533080 32538291 - 4930568A12Rik lincRNA lincRNA MGP_CASTEiJ_T0005804.1 MGP_CASTEiJ_G0004876.1 mouse_genomes_project 1 166563805 166565611 - Gm26523 lincRNA lincRNA MGP_CASTEiJ_T0020321.1 MGP_CASTEiJ_G0015597.1 mouse_genomes_project 1 86299024 86313676 - MGP_CASTEiJ_P0020321 Ncl protein_coding protein_coding MGP_CASTEiJ_T0020322.1 MGP_CASTEiJ_G0015597.1 mouse_genomes_project 1 86304797 86313640 - Ncl protein_coding retained_intron MGP_CASTEiJ_T0020323.1 MGP_CASTEiJ_G0015597.1 mouse_genomes_project 1 86304798 86305514 - Ncl protein_coding retained_intron MGP_CASTEiJ_T0020324.1 MGP_CASTEiJ_G0015597.1 mouse_genomes_project 1 86304866 86306370 - Ncl protein_coding retained_intron MGP_CASTEiJ_T0020325.1 MGP_CASTEiJ_G0015597.1 mouse_genomes_project 1 86305403 86306612 - Ncl protein_coding retained_intron MGP_CASTEiJ_T0020326.1 MGP_CASTEiJ_G0015597.1 mouse_genomes_project 1 86311613 86313245 - MGP_CASTEiJ_P0020326 Ncl protein_coding protein_coding MGP_CASTEiJ_T0018707.1 MGP_CASTEiJ_G0015296.1 mouse_genomes_project 1 36110195 36118250 + MGP_CASTEiJ_P0018707 Mrpl30 protein_coding protein_coding MGP_CASTEiJ_T0018708.1 MGP_CASTEiJ_G0015296.1 mouse_genomes_project 1 36110250 36118079 + MGP_CASTEiJ_P0018708 Mrpl30 protein_coding protein_coding MGP_CASTEiJ_T0018709.1 MGP_CASTEiJ_G0015296.1 mouse_genomes_project 1 36110251 36112966 + Mrpl30 protein_coding retained_intron MGP_CASTEiJ_T0018710.1 MGP_CASTEiJ_G0015296.1 mouse_genomes_project 1 36110261 36113704 + MGP_CASTEiJ_P0018710 Mrpl30 protein_coding protein_coding MGP_CASTEiJ_T0018711.1 MGP_CASTEiJ_G0015296.1 mouse_genomes_project 1 36112652 36117880 + MGP_CASTEiJ_P0018711 Mrpl30 protein_coding protein_coding MGP_CASTEiJ_T0018712.1 MGP_CASTEiJ_G0015296.1 mouse_genomes_project 1 36113654 36118053 + MGP_CASTEiJ_P0018712 Mrpl30 protein_coding protein_coding MGP_CASTEiJ_T0018713.1 MGP_CASTEiJ_G0015296.1 mouse_genomes_project 1 36116970 36117840 + Mrpl30 protein_coding retained_intron MGP_CASTEiJ_T0100266.1 MGP_CASTEiJ_G0037179.1 mouse_genomes_project 1 37867927 37868037 - Snord89 snoRNA snoRNA MGP_CASTEiJ_T0011782.1 MGP_CASTEiJ_G0009945.1 mouse_genomes_project 1 75772398 75772798 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019480.1 MGP_CASTEiJ_G0015441.1 mouse_genomes_project 1 62405933 62450807 + MGP_CASTEiJ_P0019480 protein_coding protein_coding MGP_CASTEiJ_T0019481.1 MGP_CASTEiJ_G0015441.1 mouse_genomes_project 1 62405937 62430792 + MGP_CASTEiJ_P0019481 protein_coding protein_coding MGP_CASTEiJ_T0019482.1 MGP_CASTEiJ_G0015441.1 mouse_genomes_project 1 62426495 62450806 + MGP_CASTEiJ_P0019482 protein_coding protein_coding MGP_CASTEiJ_T0023395.1 MGP_CASTEiJ_G0016261.1 mouse_genomes_project 1 190065260 190079048 + MGP_CASTEiJ_P0023395 Slc30a10 protein_coding protein_coding MGP_CASTEiJ_T0020356.1 MGP_CASTEiJ_G0015608.1 mouse_genomes_project 1 87154517 87163373 - MGP_CASTEiJ_P0020356 Ecel1 protein_coding protein_coding MGP_CASTEiJ_T0020357.1 MGP_CASTEiJ_G0015608.1 mouse_genomes_project 1 87154520 87161879 - MGP_CASTEiJ_P0020357 Ecel1 protein_coding protein_coding MGP_CASTEiJ_T0020358.1 MGP_CASTEiJ_G0015608.1 mouse_genomes_project 1 87154524 87163017 - MGP_CASTEiJ_P0020358 Ecel1 protein_coding protein_coding MGP_CASTEiJ_T0020359.1 MGP_CASTEiJ_G0015608.1 mouse_genomes_project 1 87154744 87155777 - Ecel1 protein_coding retained_intron MGP_CASTEiJ_T0020360.1 MGP_CASTEiJ_G0015608.1 mouse_genomes_project 1 87161874 87162163 - Ecel1 protein_coding processed_transcript MGP_CASTEiJ_T0011653.1 MGP_CASTEiJ_G0009816.1 mouse_genomes_project 1 33032012 33033918 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011890.1 MGP_CASTEiJ_G0010053.1 mouse_genomes_project 1 124175165 124175282 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009287.1 MGP_CASTEiJ_G0007475.1 mouse_genomes_project 1 135263694 135263782 - Mir6903 miRNA miRNA MGP_CASTEiJ_T0023347.1 MGP_CASTEiJ_G0016250.1 mouse_genomes_project 1 188516292 188543712 + MGP_CASTEiJ_P0023347 Dusp10 protein_coding protein_coding MGP_CASTEiJ_T0023350.1 MGP_CASTEiJ_G0016250.1 mouse_genomes_project 1 188539005 188585923 + MGP_CASTEiJ_P0023350 Dusp10 protein_coding protein_coding MGP_CASTEiJ_T0023351.1 MGP_CASTEiJ_G0016250.1 mouse_genomes_project 1 188539171 188592557 + MGP_CASTEiJ_P0023351 Dusp10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002757.1 MGP_CASTEiJ_G0002618.1 mouse_genomes_project 1 94156758 94158076 + Gm28536 antisense antisense MGP_CASTEiJ_T0005806.1 MGP_CASTEiJ_G0004878.1 mouse_genomes_project 1 167418849 167422389 - Gm16548 lincRNA lincRNA MGP_CASTEiJ_T0023233.1 MGP_CASTEiJ_G0016227.1 mouse_genomes_project 1 185550898 185594287 - MGP_CASTEiJ_P0023233 Wdr26 protein_coding protein_coding MGP_CASTEiJ_T0023234.1 MGP_CASTEiJ_G0016227.1 mouse_genomes_project 1 185550902 185594172 - MGP_CASTEiJ_P0023234 Wdr26 protein_coding protein_coding MGP_CASTEiJ_T0023235.1 MGP_CASTEiJ_G0016227.1 mouse_genomes_project 1 185554694 185594161 - MGP_CASTEiJ_P0023235 Wdr26 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023236.1 MGP_CASTEiJ_G0016227.1 mouse_genomes_project 1 185555272 185564018 - MGP_CASTEiJ_P0023236 Wdr26 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023237.1 MGP_CASTEiJ_G0016227.1 mouse_genomes_project 1 185558004 185563427 - MGP_CASTEiJ_P0023237 Wdr26 protein_coding protein_coding MGP_CASTEiJ_T0023238.1 MGP_CASTEiJ_G0016227.1 mouse_genomes_project 1 185561461 185564148 - Wdr26 protein_coding processed_transcript MGP_CASTEiJ_T0023239.1 MGP_CASTEiJ_G0016227.1 mouse_genomes_project 1 185568366 185573004 - Wdr26 protein_coding retained_intron MGP_CASTEiJ_T0023240.1 MGP_CASTEiJ_G0016227.1 mouse_genomes_project 1 185579606 185585399 - Wdr26 protein_coding retained_intron MGP_CASTEiJ_T0011677.1 MGP_CASTEiJ_G0009840.1 mouse_genomes_project 1 44126293 44126731 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005851.1 MGP_CASTEiJ_G0004914.1 mouse_genomes_project 1 186293417 186295027 - Gm5533 lincRNA lincRNA MGP_CASTEiJ_T0011612.1 MGP_CASTEiJ_G0009775.1 mouse_genomes_project 1 18996519 18996729 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0018104.1 MGP_CASTEiJ_G0015180.1 mouse_genomes_project 1 7104030 7221871 + MGP_CASTEiJ_P0018104 Sgk3 protein_coding protein_coding MGP_CASTEiJ_T0018105.1 MGP_CASTEiJ_G0015180.1 mouse_genomes_project 1 7104066 7221873 + MGP_CASTEiJ_P0018105 Sgk3 protein_coding protein_coding MGP_CASTEiJ_T0018106.1 MGP_CASTEiJ_G0015180.1 mouse_genomes_project 1 7104066 7221798 + MGP_CASTEiJ_P0018106 Sgk3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018107.1 MGP_CASTEiJ_G0015180.1 mouse_genomes_project 1 7104081 7137305 + Sgk3 protein_coding retained_intron MGP_CASTEiJ_T0018108.1 MGP_CASTEiJ_G0015180.1 mouse_genomes_project 1 7104108 7220647 + MGP_CASTEiJ_P0018108 Sgk3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018109.1 MGP_CASTEiJ_G0015180.1 mouse_genomes_project 1 7104131 7221037 + MGP_CASTEiJ_P0018109 Sgk3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018110.1 MGP_CASTEiJ_G0015180.1 mouse_genomes_project 1 7158826 7221871 + MGP_CASTEiJ_P0018110 Sgk3 protein_coding protein_coding MGP_CASTEiJ_T0018111.1 MGP_CASTEiJ_G0015180.1 mouse_genomes_project 1 7158875 7182002 + Sgk3 protein_coding processed_transcript MGP_CASTEiJ_T0018112.1 MGP_CASTEiJ_G0015180.1 mouse_genomes_project 1 7158875 7188900 + Sgk3 protein_coding retained_intron MGP_CASTEiJ_T0018113.1 MGP_CASTEiJ_G0015180.1 mouse_genomes_project 1 7158951 7220882 + MGP_CASTEiJ_P0018113 Sgk3 protein_coding protein_coding MGP_CASTEiJ_T0018114.1 MGP_CASTEiJ_G0015180.1 mouse_genomes_project 1 7202555 7210464 + Sgk3 protein_coding retained_intron MGP_CASTEiJ_T0018115.1 MGP_CASTEiJ_G0015180.1 mouse_genomes_project 1 7216498 7220215 + Sgk3 protein_coding retained_intron MGP_CASTEiJ_T0021885.1 MGP_CASTEiJ_G0015928.1 mouse_genomes_project 1 154066231 154088004 - MGP_CASTEiJ_P0021885 Rnf2 protein_coding protein_coding MGP_CASTEiJ_T0021886.1 MGP_CASTEiJ_G0015928.1 mouse_genomes_project 1 154081513 154112835 - MGP_CASTEiJ_P0021886 Rnf2 protein_coding protein_coding MGP_CASTEiJ_T0021887.1 MGP_CASTEiJ_G0015928.1 mouse_genomes_project 1 154081513 154112695 - MGP_CASTEiJ_P0021887 Rnf2 protein_coding protein_coding MGP_CASTEiJ_T0021888.1 MGP_CASTEiJ_G0015928.1 mouse_genomes_project 1 154082850 154112717 - MGP_CASTEiJ_P0021888 Rnf2 protein_coding protein_coding MGP_CASTEiJ_T0021889.1 MGP_CASTEiJ_G0015928.1 mouse_genomes_project 1 154082882 154083760 - Rnf2 protein_coding retained_intron MGP_CASTEiJ_T0021890.1 MGP_CASTEiJ_G0015928.1 mouse_genomes_project 1 154083047 154085583 - Rnf2 protein_coding processed_transcript MGP_CASTEiJ_T0021891.1 MGP_CASTEiJ_G0015928.1 mouse_genomes_project 1 154088742 154112678 - MGP_CASTEiJ_P0021891 Rnf2 protein_coding protein_coding MGP_CASTEiJ_T0005497.1 MGP_CASTEiJ_G0004638.1 mouse_genomes_project 1 4826678 4850195 + Gm30414 lincRNA lincRNA MGP_CASTEiJ_T0023102.1 MGP_CASTEiJ_G0016203.1 mouse_genomes_project 1 183785667 183879648 + MGP_CASTEiJ_P0023102 Cnst protein_coding protein_coding MGP_CASTEiJ_T0023103.1 MGP_CASTEiJ_G0016203.1 mouse_genomes_project 1 183785796 183835038 + Cnst protein_coding retained_intron MGP_CASTEiJ_T0023104.1 MGP_CASTEiJ_G0016203.1 mouse_genomes_project 1 183785806 183855564 + Cnst protein_coding retained_intron MGP_CASTEiJ_T0023105.1 MGP_CASTEiJ_G0016203.1 mouse_genomes_project 1 183845304 183857653 + Cnst protein_coding processed_transcript MGP_CASTEiJ_T0016246.1 MGP_CASTEiJ_G0014404.1 mouse_genomes_project 1 32196609 32209102 - Gm26788 processed_transcript antisense MGP_CASTEiJ_T0016247.1 MGP_CASTEiJ_G0014404.1 mouse_genomes_project 1 32205840 32209277 - Gm26788 processed_transcript retained_intron MGP_CASTEiJ_T0023106.1 MGP_CASTEiJ_G0016204.1 mouse_genomes_project 1 183913234 183931678 + MGP_CASTEiJ_P0023106 Sccpdh protein_coding protein_coding MGP_CASTEiJ_T0023107.1 MGP_CASTEiJ_G0016204.1 mouse_genomes_project 1 183913234 183931678 + MGP_CASTEiJ_P0023107 Sccpdh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023108.1 MGP_CASTEiJ_G0016204.1 mouse_genomes_project 1 183913284 183922225 + Sccpdh protein_coding retained_intron MGP_CASTEiJ_T0023109.1 MGP_CASTEiJ_G0016204.1 mouse_genomes_project 1 183925244 183931314 + MGP_CASTEiJ_P0023109 Sccpdh protein_coding protein_coding MGP_CASTEiJ_T0023110.1 MGP_CASTEiJ_G0016204.1 mouse_genomes_project 1 183925273 183928985 + MGP_CASTEiJ_P0023110 Sccpdh protein_coding protein_coding MGP_CASTEiJ_T0023111.1 MGP_CASTEiJ_G0016204.1 mouse_genomes_project 1 183928332 183931322 + Sccpdh protein_coding retained_intron MGP_CASTEiJ_T0000495.1 MGP_CASTEiJ_G0000441.1 mouse_genomes_project 1 80135428 80137369 - TEC TEC MGP_CASTEiJ_T0018609.1 MGP_CASTEiJ_G0015281.1 mouse_genomes_project 1 34725543 34851408 - MGP_CASTEiJ_P0018609 Fam178b protein_coding protein_coding MGP_CASTEiJ_T0018610.1 MGP_CASTEiJ_G0015281.1 mouse_genomes_project 1 34725547 34757572 - Fam178b protein_coding processed_transcript MGP_CASTEiJ_T0018611.1 MGP_CASTEiJ_G0015281.1 mouse_genomes_project 1 34725547 34753567 - Fam178b protein_coding processed_transcript MGP_CASTEiJ_T0018612.1 MGP_CASTEiJ_G0015281.1 mouse_genomes_project 1 34725547 34764601 - MGP_CASTEiJ_P0018612 Fam178b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018613.1 MGP_CASTEiJ_G0015281.1 mouse_genomes_project 1 34727180 34765144 - MGP_CASTEiJ_P0018613 Fam178b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018614.1 MGP_CASTEiJ_G0015281.1 mouse_genomes_project 1 34727716 34751935 - Fam178b protein_coding processed_transcript MGP_CASTEiJ_T0018615.1 MGP_CASTEiJ_G0015281.1 mouse_genomes_project 1 34740704 34764622 - Fam178b protein_coding processed_transcript MGP_CASTEiJ_T0018616.1 MGP_CASTEiJ_G0015281.1 mouse_genomes_project 1 34764165 34851408 - MGP_CASTEiJ_P0018616 Fam178b protein_coding protein_coding MGP_CASTEiJ_T0000759.1 MGP_CASTEiJ_G0000701.1 mouse_genomes_project 1 197825887 197827974 - TEC TEC MGP_CASTEiJ_T0000760.1 MGP_CASTEiJ_G0000701.1 mouse_genomes_project 1 197825938 197827479 - TEC TEC MGP_CASTEiJ_T0000453.1 MGP_CASTEiJ_G0000399.1 mouse_genomes_project 1 59905347 59906749 + TEC TEC MGP_CASTEiJ_T0005592.1 MGP_CASTEiJ_G0004706.1 mouse_genomes_project 1 58411404 58415564 - Gm26813 lincRNA lincRNA MGP_CASTEiJ_T0005827.1 MGP_CASTEiJ_G0004895.1 mouse_genomes_project 1 172741178 172760410 - Gm37839 lincRNA lincRNA MGP_CASTEiJ_T0000695.1 MGP_CASTEiJ_G0000639.1 mouse_genomes_project 1 169155547 169156091 - TEC TEC MGP_CASTEiJ_T0000678.1 MGP_CASTEiJ_G0000622.1 mouse_genomes_project 1 163781416 163783698 - TEC TEC MGP_CASTEiJ_T0011609.1 MGP_CASTEiJ_G0009772.1 mouse_genomes_project 1 17997160 17997713 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099137.1 MGP_CASTEiJ_G0036050.1 mouse_genomes_project 1 175379258 175379365 - Gm22950 snRNA snRNA MGP_CASTEiJ_T0019868.1 MGP_CASTEiJ_G0015521.1 mouse_genomes_project 1 74617482 74623836 - MGP_CASTEiJ_P0019868 Ihh protein_coding protein_coding MGP_CASTEiJ_T0019869.1 MGP_CASTEiJ_G0015521.1 mouse_genomes_project 1 74619888 74623606 - Ihh protein_coding retained_intron MGP_CASTEiJ_T0020998.1 MGP_CASTEiJ_G0015747.1 mouse_genomes_project 1 120338261 120444966 - MGP_CASTEiJ_P0020998 Epb41l5 protein_coding protein_coding MGP_CASTEiJ_T0020999.1 MGP_CASTEiJ_G0015747.1 mouse_genomes_project 1 120341359 120444964 - MGP_CASTEiJ_P0020999 Epb41l5 protein_coding protein_coding MGP_CASTEiJ_T0021000.1 MGP_CASTEiJ_G0015747.1 mouse_genomes_project 1 120347447 120393341 - Epb41l5 protein_coding retained_intron MGP_CASTEiJ_T0021001.1 MGP_CASTEiJ_G0015747.1 mouse_genomes_project 1 120369739 120372027 - Epb41l5 protein_coding retained_intron MGP_CASTEiJ_T0021002.1 MGP_CASTEiJ_G0015747.1 mouse_genomes_project 1 120383774 120445030 - MGP_CASTEiJ_P0021002 Epb41l5 protein_coding protein_coding MGP_CASTEiJ_T0021003.1 MGP_CASTEiJ_G0015747.1 mouse_genomes_project 1 120388112 120444647 - MGP_CASTEiJ_P0021003 Epb41l5 protein_coding protein_coding MGP_CASTEiJ_T0021004.1 MGP_CASTEiJ_G0015747.1 mouse_genomes_project 1 120388480 120392276 - Epb41l5 protein_coding retained_intron MGP_CASTEiJ_T0021005.1 MGP_CASTEiJ_G0015747.1 mouse_genomes_project 1 120412996 120429333 - Epb41l5 protein_coding retained_intron MGP_CASTEiJ_T0021006.1 MGP_CASTEiJ_G0015747.1 mouse_genomes_project 1 120417302 120444654 - MGP_CASTEiJ_P0021006 Epb41l5 protein_coding protein_coding MGP_CASTEiJ_T0000507.1 MGP_CASTEiJ_G0000453.1 mouse_genomes_project 1 84403386 84408176 - TEC TEC MGP_CASTEiJ_T0009277.1 MGP_CASTEiJ_G0007465.1 mouse_genomes_project 1 93859192 93859320 + Mir6345 miRNA miRNA MGP_CASTEiJ_T0022664.1 MGP_CASTEiJ_G0016084.1 mouse_genomes_project 1 174526802 174540323 + MGP_CASTEiJ_P0022664 Fcgr4 protein_coding protein_coding MGP_CASTEiJ_T0005868.1 MGP_CASTEiJ_G0004925.1 mouse_genomes_project 1 189151935 189171181 - Gm37800 lincRNA lincRNA MGP_CASTEiJ_T0005869.1 MGP_CASTEiJ_G0004925.1 mouse_genomes_project 1 189152573 189159613 - Gm37800 lincRNA lincRNA MGP_CASTEiJ_T0018933.1 MGP_CASTEiJ_G0015344.1 mouse_genomes_project 1 43908866 43923742 + Col3a1 protein_coding retained_intron MGP_CASTEiJ_T0018934.1 MGP_CASTEiJ_G0015344.1 mouse_genomes_project 1 43908866 43949888 + MGP_CASTEiJ_P0018934 Col3a1 protein_coding protein_coding MGP_CASTEiJ_T0018935.1 MGP_CASTEiJ_G0015344.1 mouse_genomes_project 1 43908975 43914335 + Col3a1 protein_coding processed_transcript MGP_CASTEiJ_T0018936.1 MGP_CASTEiJ_G0015344.1 mouse_genomes_project 1 43926355 43927671 + Col3a1 protein_coding retained_intron MGP_CASTEiJ_T0018937.1 MGP_CASTEiJ_G0015344.1 mouse_genomes_project 1 43932916 43936014 + Col3a1 protein_coding retained_intron MGP_CASTEiJ_T0018938.1 MGP_CASTEiJ_G0015344.1 mouse_genomes_project 1 43934483 43940620 + MGP_CASTEiJ_P0018938 Col3a1 protein_coding protein_coding MGP_CASTEiJ_T0018939.1 MGP_CASTEiJ_G0015344.1 mouse_genomes_project 1 43939901 43947949 + MGP_CASTEiJ_P0018939 Col3a1 protein_coding protein_coding MGP_CASTEiJ_T0018986.1 MGP_CASTEiJ_G0015356.1 mouse_genomes_project 1 50446211 50620796 - MGP_CASTEiJ_P0018986 Myo1b protein_coding protein_coding MGP_CASTEiJ_T0018987.1 MGP_CASTEiJ_G0015356.1 mouse_genomes_project 1 50446427 50620666 - MGP_CASTEiJ_P0018987 Myo1b protein_coding protein_coding MGP_CASTEiJ_T0018988.1 MGP_CASTEiJ_G0015356.1 mouse_genomes_project 1 50446434 50612018 - MGP_CASTEiJ_P0018988 Myo1b protein_coding protein_coding MGP_CASTEiJ_T0018989.1 MGP_CASTEiJ_G0015356.1 mouse_genomes_project 1 50446439 50620653 - MGP_CASTEiJ_P0018989 Myo1b protein_coding protein_coding MGP_CASTEiJ_T0018990.1 MGP_CASTEiJ_G0015356.1 mouse_genomes_project 1 50457608 50461740 - Myo1b protein_coding retained_intron MGP_CASTEiJ_T0018991.1 MGP_CASTEiJ_G0015356.1 mouse_genomes_project 1 50459785 50468179 - Myo1b protein_coding processed_transcript MGP_CASTEiJ_T0018992.1 MGP_CASTEiJ_G0015356.1 mouse_genomes_project 1 50459853 50464660 - Myo1b protein_coding retained_intron MGP_CASTEiJ_T0018993.1 MGP_CASTEiJ_G0015356.1 mouse_genomes_project 1 50464145 50473850 - Myo1b protein_coding processed_transcript MGP_CASTEiJ_T0018994.1 MGP_CASTEiJ_G0015356.1 mouse_genomes_project 1 50473806 50494058 - Myo1b protein_coding processed_transcript MGP_CASTEiJ_T0018995.1 MGP_CASTEiJ_G0015356.1 mouse_genomes_project 1 50478508 50481013 - Myo1b protein_coding retained_intron MGP_CASTEiJ_T0018996.1 MGP_CASTEiJ_G0015356.1 mouse_genomes_project 1 50496320 50599918 - MGP_CASTEiJ_P0018996 Myo1b protein_coding protein_coding MGP_CASTEiJ_T0018997.1 MGP_CASTEiJ_G0015356.1 mouse_genomes_project 1 50499208 50522016 - Myo1b protein_coding processed_transcript MGP_CASTEiJ_T0018998.1 MGP_CASTEiJ_G0015356.1 mouse_genomes_project 1 50512328 50620637 - Myo1b protein_coding retained_intron MGP_CASTEiJ_T0018999.1 MGP_CASTEiJ_G0015356.1 mouse_genomes_project 1 50569089 50620646 - Myo1b protein_coding retained_intron MGP_CASTEiJ_T0000561.1 MGP_CASTEiJ_G0000507.1 mouse_genomes_project 1 123818615 123833896 + TEC TEC MGP_CASTEiJ_T0000524.1 MGP_CASTEiJ_G0000470.1 mouse_genomes_project 1 88920000 88921813 + TEC TEC MGP_CASTEiJ_T0020205.1 MGP_CASTEiJ_G0015577.1 mouse_genomes_project 1 83159038 83183373 + Daw1 protein_coding retained_intron MGP_CASTEiJ_T0020206.1 MGP_CASTEiJ_G0015577.1 mouse_genomes_project 1 83159048 83220063 + MGP_CASTEiJ_P0020206 Daw1 protein_coding protein_coding MGP_CASTEiJ_T0020207.1 MGP_CASTEiJ_G0015577.1 mouse_genomes_project 1 83159048 83220057 + MGP_CASTEiJ_P0020207 Daw1 protein_coding protein_coding MGP_CASTEiJ_T0020208.1 MGP_CASTEiJ_G0015577.1 mouse_genomes_project 1 83159055 83220059 + MGP_CASTEiJ_P0020208 Daw1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020209.1 MGP_CASTEiJ_G0015577.1 mouse_genomes_project 1 83159067 83220063 + MGP_CASTEiJ_P0020209 Daw1 protein_coding protein_coding MGP_CASTEiJ_T0021530.1 MGP_CASTEiJ_G0015862.1 mouse_genomes_project 1 136362214 136582983 - MGP_CASTEiJ_P0021530 Ppp1r12b protein_coding protein_coding MGP_CASTEiJ_T0021531.1 MGP_CASTEiJ_G0015862.1 mouse_genomes_project 1 136363124 136367861 - Ppp1r12b protein_coding processed_transcript MGP_CASTEiJ_T0021532.1 MGP_CASTEiJ_G0015862.1 mouse_genomes_project 1 136366574 136461970 - Ppp1r12b protein_coding processed_transcript MGP_CASTEiJ_T0021533.1 MGP_CASTEiJ_G0015862.1 mouse_genomes_project 1 136367476 136582894 - MGP_CASTEiJ_P0021533 Ppp1r12b protein_coding protein_coding MGP_CASTEiJ_T0021534.1 MGP_CASTEiJ_G0015862.1 mouse_genomes_project 1 136373421 136582983 - MGP_CASTEiJ_P0021534 Ppp1r12b protein_coding protein_coding MGP_CASTEiJ_T0021535.1 MGP_CASTEiJ_G0015862.1 mouse_genomes_project 1 136389079 136416890 - Ppp1r12b protein_coding retained_intron MGP_CASTEiJ_T0021536.1 MGP_CASTEiJ_G0015862.1 mouse_genomes_project 1 136392964 136395319 - Ppp1r12b protein_coding retained_intron MGP_CASTEiJ_T0021537.1 MGP_CASTEiJ_G0015862.1 mouse_genomes_project 1 136449599 136451357 - Ppp1r12b protein_coding processed_transcript MGP_CASTEiJ_T0021538.1 MGP_CASTEiJ_G0015862.1 mouse_genomes_project 1 136449602 136582971 - Ppp1r12b protein_coding retained_intron MGP_CASTEiJ_T0021539.1 MGP_CASTEiJ_G0015862.1 mouse_genomes_project 1 136573602 136582985 - MGP_CASTEiJ_P0021539 Ppp1r12b protein_coding protein_coding MGP_CASTEiJ_T0000633.1 MGP_CASTEiJ_G0000577.1 mouse_genomes_project 1 145074580 145074714 + TEC TEC MGP_CASTEiJ_T0011740.1 MGP_CASTEiJ_G0009903.1 mouse_genomes_project 1 59926457 59926982 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000468.1 MGP_CASTEiJ_G0000414.1 mouse_genomes_project 1 66031376 66032515 - TEC TEC MGP_CASTEiJ_T0000384.1 MGP_CASTEiJ_G0000331.1 mouse_genomes_project 1 23500583 23503918 - TEC TEC MGP_CASTEiJ_T0005568.1 MGP_CASTEiJ_G0004687.1 mouse_genomes_project 1 42408509 42409008 - Gm29156 lincRNA lincRNA MGP_CASTEiJ_T0101483.1 MGP_CASTEiJ_G0038395.1 mouse_genomes_project 1 34945293 34945603 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101484.1 MGP_CASTEiJ_G0038395.1 mouse_genomes_project 1 34945448 34946305 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0020581.1 MGP_CASTEiJ_G0015657.1 mouse_genomes_project 1 91771276 91782685 + MGP_CASTEiJ_P0020581 Klhl30 protein_coding protein_coding MGP_CASTEiJ_T0020582.1 MGP_CASTEiJ_G0015657.1 mouse_genomes_project 1 91773704 91777937 + MGP_CASTEiJ_P0020582 Klhl30 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023332.1 MGP_CASTEiJ_G0016247.1 mouse_genomes_project 1 187821231 187840272 - MGP_CASTEiJ_P0023332 protein_coding protein_coding MGP_CASTEiJ_T0023333.1 MGP_CASTEiJ_G0016247.1 mouse_genomes_project 1 187821333 187829288 - MGP_CASTEiJ_P0023333 protein_coding protein_coding MGP_CASTEiJ_T0023334.1 MGP_CASTEiJ_G0016247.1 mouse_genomes_project 1 187821842 187866971 - MGP_CASTEiJ_P0023334 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023335.1 MGP_CASTEiJ_G0016247.1 mouse_genomes_project 1 187830275 187833803 - MGP_CASTEiJ_P0023335 protein_coding protein_coding MGP_CASTEiJ_T0023336.1 MGP_CASTEiJ_G0016247.1 mouse_genomes_project 1 187838706 187847621 - protein_coding retained_intron MGP_CASTEiJ_T0023337.1 MGP_CASTEiJ_G0016247.1 mouse_genomes_project 1 187839202 187847599 - MGP_CASTEiJ_P0023337 protein_coding protein_coding MGP_CASTEiJ_T0023338.1 MGP_CASTEiJ_G0016247.1 mouse_genomes_project 1 187854994 187866995 - MGP_CASTEiJ_P0023338 protein_coding protein_coding MGP_CASTEiJ_T0023404.1 MGP_CASTEiJ_G0016264.1 mouse_genomes_project 1 191411714 191438358 - MGP_CASTEiJ_P0023404 Rrp15 protein_coding protein_coding MGP_CASTEiJ_T0023405.1 MGP_CASTEiJ_G0016264.1 mouse_genomes_project 1 191411828 191438325 - Rrp15 protein_coding retained_intron MGP_CASTEiJ_T0005701.1 MGP_CASTEiJ_G0004795.1 mouse_genomes_project 1 106741742 106762148 - Gm20753 lincRNA lincRNA MGP_CASTEiJ_T0002798.1 MGP_CASTEiJ_G0002646.1 mouse_genomes_project 1 137816295 137819541 - Gm37759 antisense antisense MGP_CASTEiJ_T0100328.1 MGP_CASTEiJ_G0037241.1 mouse_genomes_project 1 164198987 164199053 + Snord78 snoRNA snoRNA MGP_CASTEiJ_T0022339.1 MGP_CASTEiJ_G0016008.1 mouse_genomes_project 1 165896714 165906336 - 7420461P10Rik protein_coding processed_transcript MGP_CASTEiJ_T0022340.1 MGP_CASTEiJ_G0016008.1 mouse_genomes_project 1 165896714 165907601 - MGP_CASTEiJ_P0022340 7420461P10Rik protein_coding protein_coding MGP_CASTEiJ_T0022341.1 MGP_CASTEiJ_G0016008.1 mouse_genomes_project 1 165896724 165907714 - MGP_CASTEiJ_P0022341 7420461P10Rik protein_coding protein_coding MGP_CASTEiJ_T0098794.1 MGP_CASTEiJ_G0035724.1 mouse_genomes_project 1 106123780 106124233 - Gm28404 sense_intronic sense_intronic MGP_CASTEiJ_T0101912.1 MGP_CASTEiJ_G0038637.1 mouse_genomes_project 1 64635600 64635764 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0021207.1 MGP_CASTEiJ_G0015789.1 mouse_genomes_project 1 132100787 132114484 + MGP_CASTEiJ_P0021207 AA986860 protein_coding protein_coding MGP_CASTEiJ_T0021208.1 MGP_CASTEiJ_G0015789.1 mouse_genomes_project 1 132100921 132112296 + AA986860 protein_coding processed_transcript MGP_CASTEiJ_T0021209.1 MGP_CASTEiJ_G0015789.1 mouse_genomes_project 1 132110097 132114483 + AA986860 protein_coding retained_intron MGP_CASTEiJ_T0000352.1 MGP_CASTEiJ_G0000301.1 mouse_genomes_project 1 11262576 11264829 - TEC TEC MGP_CASTEiJ_T0019711.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73509308 73729282 - MGP_CASTEiJ_P0019711 Tns1 protein_coding protein_coding MGP_CASTEiJ_T0019712.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73509309 73729284 - MGP_CASTEiJ_P0019712 Tns1 protein_coding protein_coding MGP_CASTEiJ_T0019713.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73509309 73695716 - MGP_CASTEiJ_P0019713 Tns1 protein_coding protein_coding MGP_CASTEiJ_T0019714.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73512986 73527593 - MGP_CASTEiJ_P0019714 Tns1 protein_coding protein_coding MGP_CASTEiJ_T0019715.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73513171 73595798 - MGP_CASTEiJ_P0019715 Tns1 protein_coding protein_coding MGP_CASTEiJ_T0019716.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73513195 73595798 - MGP_CASTEiJ_P0019716 Tns1 protein_coding protein_coding MGP_CASTEiJ_T0019717.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73524206 73540124 - MGP_CASTEiJ_P0019717 Tns1 protein_coding protein_coding MGP_CASTEiJ_T0019718.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73524493 73527297 - Tns1 protein_coding retained_intron MGP_CASTEiJ_T0019719.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73524493 73529895 - Tns1 protein_coding processed_transcript MGP_CASTEiJ_T0019720.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73524706 73529585 - Tns1 protein_coding processed_transcript MGP_CASTEiJ_T0019721.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73552547 73563566 - MGP_CASTEiJ_P0019721 Tns1 protein_coding protein_coding MGP_CASTEiJ_T0019722.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73581085 73587517 - Tns1 protein_coding retained_intron MGP_CASTEiJ_T0019723.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73590130 73598925 - Tns1 protein_coding retained_intron MGP_CASTEiJ_T0019724.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73590782 73618784 - Tns1 protein_coding processed_transcript MGP_CASTEiJ_T0019725.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73592509 73598925 - Tns1 protein_coding processed_transcript MGP_CASTEiJ_T0019726.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73592614 73602010 - MGP_CASTEiJ_P0019726 Tns1 protein_coding protein_coding MGP_CASTEiJ_T0019727.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73593572 73640783 - MGP_CASTEiJ_P0019727 Tns1 protein_coding protein_coding MGP_CASTEiJ_T0019728.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73595225 73598130 - Tns1 protein_coding retained_intron MGP_CASTEiJ_T0019729.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73595713 73701208 - MGP_CASTEiJ_P0019729 Tns1 protein_coding protein_coding MGP_CASTEiJ_T0019730.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73597489 73701242 - MGP_CASTEiJ_P0019730 Tns1 protein_coding protein_coding MGP_CASTEiJ_T0019731.1 MGP_CASTEiJ_G0015492.1 mouse_genomes_project 1 73602727 73640807 - Tns1 protein_coding processed_transcript MGP_CASTEiJ_T0000483.1 MGP_CASTEiJ_G0000429.1 mouse_genomes_project 1 73932116 73935025 + TEC TEC MGP_CASTEiJ_T0009264.1 MGP_CASTEiJ_G0007452.1 mouse_genomes_project 1 82064553 82064657 + Mir6344 miRNA miRNA MGP_CASTEiJ_T0009289.1 MGP_CASTEiJ_G0007477.1 mouse_genomes_project 1 139832761 139832848 + Mir181a-1 miRNA miRNA MGP_CASTEiJ_T0002806.1 MGP_CASTEiJ_G0002653.1 mouse_genomes_project 1 152845329 152868723 - 2310030A07Rik antisense antisense MGP_CASTEiJ_T0000634.1 MGP_CASTEiJ_G0000578.1 mouse_genomes_project 1 147715250 147718493 - TEC TEC MGP_CASTEiJ_T0023657.1 MGP_CASTEiJ_G0016310.1 mouse_genomes_project 1 200006256 200029534 + MGP_CASTEiJ_P0023657 Cd34 protein_coding protein_coding MGP_CASTEiJ_T0023658.1 MGP_CASTEiJ_G0016310.1 mouse_genomes_project 1 200006312 200029534 + MGP_CASTEiJ_P0023658 Cd34 protein_coding protein_coding MGP_CASTEiJ_T0023659.1 MGP_CASTEiJ_G0016310.1 mouse_genomes_project 1 200006342 200019011 + Cd34 protein_coding retained_intron MGP_CASTEiJ_T0023660.1 MGP_CASTEiJ_G0016310.1 mouse_genomes_project 1 200006388 200008669 + Cd34 protein_coding retained_intron MGP_CASTEiJ_T0023661.1 MGP_CASTEiJ_G0016310.1 mouse_genomes_project 1 200006432 200026808 + MGP_CASTEiJ_P0023661 Cd34 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098805.1 MGP_CASTEiJ_G0035735.1 mouse_genomes_project 1 168760592 168763671 - Gm37864 sense_intronic sense_intronic MGP_CASTEiJ_T0011762.1 MGP_CASTEiJ_G0009925.1 mouse_genomes_project 1 64760885 64761169 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009323.1 MGP_CASTEiJ_G0007511.1 mouse_genomes_project 1 200106728 200106809 + Mir29b-2 miRNA miRNA MGP_CASTEiJ_T0005805.1 MGP_CASTEiJ_G0004877.1 mouse_genomes_project 1 166859999 166863759 + Gm29500 lincRNA lincRNA MGP_CASTEiJ_T0099082.1 MGP_CASTEiJ_G0035995.1 mouse_genomes_project 1 44297655 44297762 - Gm23216 snRNA snRNA MGP_CASTEiJ_T0016257.1 MGP_CASTEiJ_G0014409.1 mouse_genomes_project 1 41292551 41300376 - Pantr2 processed_transcript lincRNA MGP_CASTEiJ_T0016258.1 MGP_CASTEiJ_G0014409.1 mouse_genomes_project 1 41292562 41293578 - Pantr2 processed_transcript TEC MGP_CASTEiJ_T0000677.1 MGP_CASTEiJ_G0000621.1 mouse_genomes_project 1 163743018 163746487 - TEC TEC MGP_CASTEiJ_T0011621.1 MGP_CASTEiJ_G0009784.1 mouse_genomes_project 1 22656931 22658127 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099088.1 MGP_CASTEiJ_G0036001.1 mouse_genomes_project 1 60529949 60530052 + Gm25839 snRNA snRNA MGP_CASTEiJ_T0000416.1 MGP_CASTEiJ_G0000362.1 mouse_genomes_project 1 35694517 35697271 - TEC TEC MGP_CASTEiJ_T0002824.1 MGP_CASTEiJ_G0002669.1 mouse_genomes_project 1 164325159 164330538 - 4930469G21Rik antisense antisense MGP_CASTEiJ_T0002825.1 MGP_CASTEiJ_G0002669.1 mouse_genomes_project 1 164327444 164330538 - 4930469G21Rik antisense antisense MGP_CASTEiJ_T0011654.1 MGP_CASTEiJ_G0009817.1 mouse_genomes_project 1 33071646 33071875 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100301.1 MGP_CASTEiJ_G0037214.1 mouse_genomes_project 1 108125900 108126031 - Gm24553 snoRNA snoRNA MGP_CASTEiJ_T0011615.1 MGP_CASTEiJ_G0009778.1 mouse_genomes_project 1 19905377 19905834 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020788.1 MGP_CASTEiJ_G0015699.1 mouse_genomes_project 1 94336240 94354427 + MGP_CASTEiJ_P0020788 Ing5 protein_coding protein_coding MGP_CASTEiJ_T0020789.1 MGP_CASTEiJ_G0015699.1 mouse_genomes_project 1 94336258 94354433 + MGP_CASTEiJ_P0020789 Ing5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020790.1 MGP_CASTEiJ_G0015699.1 mouse_genomes_project 1 94336620 94350717 + MGP_CASTEiJ_P0020790 Ing5 protein_coding protein_coding MGP_CASTEiJ_T0002678.1 MGP_CASTEiJ_G0002557.1 mouse_genomes_project 1 35525329 35529796 - 4930439A04Rik antisense antisense MGP_CASTEiJ_T0002679.1 MGP_CASTEiJ_G0002557.1 mouse_genomes_project 1 35529178 35529812 - 4930439A04Rik antisense antisense MGP_CASTEiJ_T0011793.1 MGP_CASTEiJ_G0009956.1 mouse_genomes_project 1 82769242 82769633 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020636.1 MGP_CASTEiJ_G0015667.1 mouse_genomes_project 1 92923953 92930456 - MGP_CASTEiJ_P0020636 protein_coding protein_coding MGP_CASTEiJ_T0012022.1 MGP_CASTEiJ_G0010185.1 mouse_genomes_project 1 193913569 193914767 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000705.1 MGP_CASTEiJ_G0000649.1 mouse_genomes_project 1 176570329 176571201 + TEC TEC MGP_CASTEiJ_T0002703.1 MGP_CASTEiJ_G0002577.1 mouse_genomes_project 1 53421252 53482442 + 4930444A19Rik antisense antisense MGP_CASTEiJ_T0002704.1 MGP_CASTEiJ_G0002577.1 mouse_genomes_project 1 53432491 53515080 + 4930444A19Rik antisense antisense MGP_CASTEiJ_T0021679.1 MGP_CASTEiJ_G0015891.1 mouse_genomes_project 1 138198315 138227921 + Kif14 protein_coding retained_intron MGP_CASTEiJ_T0021680.1 MGP_CASTEiJ_G0015891.1 mouse_genomes_project 1 138199896 138268859 + MGP_CASTEiJ_P0021680 Kif14 protein_coding protein_coding MGP_CASTEiJ_T0021681.1 MGP_CASTEiJ_G0015891.1 mouse_genomes_project 1 138199908 138268859 + MGP_CASTEiJ_P0021681 Kif14 protein_coding protein_coding MGP_CASTEiJ_T0021682.1 MGP_CASTEiJ_G0015891.1 mouse_genomes_project 1 138199908 138264842 + MGP_CASTEiJ_P0021682 Kif14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021683.1 MGP_CASTEiJ_G0015891.1 mouse_genomes_project 1 138200976 138203695 + Kif14 protein_coding retained_intron MGP_CASTEiJ_T0021684.1 MGP_CASTEiJ_G0015891.1 mouse_genomes_project 1 138208358 138211914 + Kif14 protein_coding processed_transcript MGP_CASTEiJ_T0021685.1 MGP_CASTEiJ_G0015891.1 mouse_genomes_project 1 138208358 138211914 + Kif14 protein_coding processed_transcript MGP_CASTEiJ_T0021686.1 MGP_CASTEiJ_G0015891.1 mouse_genomes_project 1 138208358 138211914 + MGP_CASTEiJ_P0021686 Kif14 protein_coding protein_coding MGP_CASTEiJ_T0019527.1 MGP_CASTEiJ_G0015452.1 mouse_genomes_project 1 63978895 64154101 - MGP_CASTEiJ_P0019527 Plekhm3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019528.1 MGP_CASTEiJ_G0015452.1 mouse_genomes_project 1 63982057 64154101 - MGP_CASTEiJ_P0019528 Plekhm3 protein_coding protein_coding MGP_CASTEiJ_T0019529.1 MGP_CASTEiJ_G0015452.1 mouse_genomes_project 1 63986741 64029858 - Plekhm3 protein_coding processed_transcript MGP_CASTEiJ_T0019530.1 MGP_CASTEiJ_G0015452.1 mouse_genomes_project 1 64053389 64123452 - Plekhm3 protein_coding retained_intron MGP_CASTEiJ_T0019531.1 MGP_CASTEiJ_G0015452.1 mouse_genomes_project 1 64133428 64154052 - MGP_CASTEiJ_P0019531 Plekhm3 protein_coding protein_coding MGP_CASTEiJ_T0019532.1 MGP_CASTEiJ_G0015452.1 mouse_genomes_project 1 64149089 64154004 - Plekhm3 protein_coding processed_transcript MGP_CASTEiJ_T0099037.1 MGP_CASTEiJ_G0035954.1 mouse_genomes_project 1 194054399 194055140 - 2900042K21Rik sense_overlapping sense_overlapping MGP_CASTEiJ_T0000492.1 MGP_CASTEiJ_G0000438.1 mouse_genomes_project 1 79935907 79937739 - TEC TEC MGP_CASTEiJ_T0022872.1 MGP_CASTEiJ_G0016128.1 mouse_genomes_project 1 175940257 175969817 - MGP_CASTEiJ_P0022872 Atp1a2 protein_coding protein_coding MGP_CASTEiJ_T0022873.1 MGP_CASTEiJ_G0016128.1 mouse_genomes_project 1 175943069 175969817 - Atp1a2 protein_coding retained_intron MGP_CASTEiJ_T0022874.1 MGP_CASTEiJ_G0016128.1 mouse_genomes_project 1 175947648 175948183 - Atp1a2 protein_coding retained_intron MGP_CASTEiJ_T0022875.1 MGP_CASTEiJ_G0016128.1 mouse_genomes_project 1 175949780 175969817 - MGP_CASTEiJ_P0022875 Atp1a2 protein_coding protein_coding MGP_CASTEiJ_T0022876.1 MGP_CASTEiJ_G0016128.1 mouse_genomes_project 1 175956034 175969817 - Atp1a2 protein_coding retained_intron MGP_CASTEiJ_T0018848.1 MGP_CASTEiJ_G0015328.1 mouse_genomes_project 1 41550613 41552898 + Gpr45 protein_coding processed_transcript MGP_CASTEiJ_T0018849.1 MGP_CASTEiJ_G0015328.1 mouse_genomes_project 1 41550704 41640604 + MGP_CASTEiJ_P0018849 Gpr45 protein_coding protein_coding MGP_CASTEiJ_T0018850.1 MGP_CASTEiJ_G0015328.1 mouse_genomes_project 1 41550880 41636337 + Gpr45 protein_coding processed_transcript MGP_CASTEiJ_T0018851.1 MGP_CASTEiJ_G0015328.1 mouse_genomes_project 1 41550923 41551620 + Gpr45 protein_coding processed_transcript MGP_CASTEiJ_T0018852.1 MGP_CASTEiJ_G0015328.1 mouse_genomes_project 1 41637215 41638763 + MGP_CASTEiJ_P0018852 Gpr45 protein_coding protein_coding MGP_CASTEiJ_T0000548.1 MGP_CASTEiJ_G0000494.1 mouse_genomes_project 1 106812808 106817795 + TEC TEC MGP_CASTEiJ_T0005898.1 MGP_CASTEiJ_G0004950.1 mouse_genomes_project 1 198038172 198040798 - lincRNA lincRNA MGP_CASTEiJ_T0009228.1 MGP_CASTEiJ_G0007416.1 mouse_genomes_project 1 20988931 20989002 + Mir30a miRNA miRNA MGP_CASTEiJ_T0019710.1 MGP_CASTEiJ_G0015491.1 mouse_genomes_project 1 72585669 72586505 - MGP_CASTEiJ_P0019710 Tnp1 protein_coding protein_coding MGP_CASTEiJ_T0011839.1 MGP_CASTEiJ_G0010002.1 mouse_genomes_project 1 105869369 105869695 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010909.1 MGP_CASTEiJ_G0009097.1 mouse_genomes_project 1 11353774 11354079 + Gm25491 misc_RNA misc_RNA MGP_CASTEiJ_T0009284.1 MGP_CASTEiJ_G0007472.1 mouse_genomes_project 1 132893850 132894014 - Gm24273 miRNA miRNA MGP_CASTEiJ_T0023256.1 MGP_CASTEiJ_G0016232.1 mouse_genomes_project 1 186342880 186475552 - MGP_CASTEiJ_P0023256 Enah protein_coding protein_coding MGP_CASTEiJ_T0023257.1 MGP_CASTEiJ_G0016232.1 mouse_genomes_project 1 186350839 186475873 - MGP_CASTEiJ_P0023257 Enah protein_coding protein_coding MGP_CASTEiJ_T0023258.1 MGP_CASTEiJ_G0016232.1 mouse_genomes_project 1 186350859 186475863 - MGP_CASTEiJ_P0023258 Enah protein_coding protein_coding MGP_CASTEiJ_T0023259.1 MGP_CASTEiJ_G0016232.1 mouse_genomes_project 1 186350859 186475863 - MGP_CASTEiJ_P0023259 Enah protein_coding protein_coding MGP_CASTEiJ_T0023260.1 MGP_CASTEiJ_G0016232.1 mouse_genomes_project 1 186351738 186354864 - Enah protein_coding retained_intron MGP_CASTEiJ_T0023261.1 MGP_CASTEiJ_G0016232.1 mouse_genomes_project 1 186351892 186353278 - Enah protein_coding retained_intron MGP_CASTEiJ_T0023262.1 MGP_CASTEiJ_G0016232.1 mouse_genomes_project 1 186351920 186466797 - MGP_CASTEiJ_P0023262 Enah protein_coding protein_coding MGP_CASTEiJ_T0023263.1 MGP_CASTEiJ_G0016232.1 mouse_genomes_project 1 186351927 186475552 - MGP_CASTEiJ_P0023263 Enah protein_coding protein_coding MGP_CASTEiJ_T0023264.1 MGP_CASTEiJ_G0016232.1 mouse_genomes_project 1 186351927 186475552 - MGP_CASTEiJ_P0023264 Enah protein_coding protein_coding MGP_CASTEiJ_T0023265.1 MGP_CASTEiJ_G0016232.1 mouse_genomes_project 1 186351927 186475552 - MGP_CASTEiJ_P0023265 Enah protein_coding protein_coding MGP_CASTEiJ_T0023266.1 MGP_CASTEiJ_G0016232.1 mouse_genomes_project 1 186352122 186364536 - Enah protein_coding retained_intron MGP_CASTEiJ_T0023267.1 MGP_CASTEiJ_G0016232.1 mouse_genomes_project 1 186357317 186359222 - Enah protein_coding retained_intron MGP_CASTEiJ_T0023268.1 MGP_CASTEiJ_G0016232.1 mouse_genomes_project 1 186366565 186370823 - MGP_CASTEiJ_P0023268 Enah protein_coding protein_coding MGP_CASTEiJ_T0023269.1 MGP_CASTEiJ_G0016232.1 mouse_genomes_project 1 186370255 186406005 - Enah protein_coding retained_intron MGP_CASTEiJ_T0023270.1 MGP_CASTEiJ_G0016232.1 mouse_genomes_project 1 186382826 186390255 - Enah protein_coding retained_intron MGP_CASTEiJ_T0023271.1 MGP_CASTEiJ_G0016232.1 mouse_genomes_project 1 186405603 186475567 - Enah protein_coding retained_intron MGP_CASTEiJ_T0018623.1 MGP_CASTEiJ_G0015283.1 mouse_genomes_project 1 34866408 34878903 - MGP_CASTEiJ_P0018623 Actr1b protein_coding protein_coding MGP_CASTEiJ_T0018624.1 MGP_CASTEiJ_G0015283.1 mouse_genomes_project 1 34869501 34869940 - Actr1b protein_coding retained_intron MGP_CASTEiJ_T0018625.1 MGP_CASTEiJ_G0015283.1 mouse_genomes_project 1 34870591 34878842 - Actr1b protein_coding retained_intron MGP_CASTEiJ_T0018626.1 MGP_CASTEiJ_G0015283.1 mouse_genomes_project 1 34870682 34878573 - MGP_CASTEiJ_P0018626 Actr1b protein_coding protein_coding MGP_CASTEiJ_T0018627.1 MGP_CASTEiJ_G0015283.1 mouse_genomes_project 1 34870703 34883608 - MGP_CASTEiJ_P0018627 Actr1b protein_coding protein_coding MGP_CASTEiJ_T0018628.1 MGP_CASTEiJ_G0015283.1 mouse_genomes_project 1 34871389 34876069 - Actr1b protein_coding retained_intron MGP_CASTEiJ_T0018629.1 MGP_CASTEiJ_G0015283.1 mouse_genomes_project 1 34875421 34878814 - Actr1b protein_coding processed_transcript MGP_CASTEiJ_T0009306.1 MGP_CASTEiJ_G0007494.1 mouse_genomes_project 1 172439862 172439978 - Mir6354 miRNA miRNA MGP_CASTEiJ_T0000450.1 MGP_CASTEiJ_G0000396.1 mouse_genomes_project 1 59368456 59369511 + TEC TEC MGP_CASTEiJ_T0011993.1 MGP_CASTEiJ_G0010156.1 mouse_genomes_project 1 175120730 175120902 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000765.1 MGP_CASTEiJ_G0000706.1 mouse_genomes_project 1 199710621 199712455 + TEC TEC MGP_CASTEiJ_T0005546.1 MGP_CASTEiJ_G0004678.1 mouse_genomes_project 1 40276772 40453303 + Gm29260 lincRNA lincRNA MGP_CASTEiJ_T0005547.1 MGP_CASTEiJ_G0004678.1 mouse_genomes_project 1 40431302 40433038 + Gm29260 lincRNA lincRNA MGP_CASTEiJ_T0101942.1 MGP_CASTEiJ_G0038667.1 mouse_genomes_project 1 176792799 176793094 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000670.1 MGP_CASTEiJ_G0000614.1 mouse_genomes_project 1 162406740 162407151 - TEC TEC MGP_CASTEiJ_T0005663.1 MGP_CASTEiJ_G0004761.1 mouse_genomes_project 1 88714394 88720210 + Gm28888 lincRNA lincRNA MGP_CASTEiJ_T0020819.1 MGP_CASTEiJ_G0015709.1 mouse_genomes_project 1 98252169 98274410 + MGP_CASTEiJ_P0020819 Gin1 protein_coding protein_coding MGP_CASTEiJ_T0020820.1 MGP_CASTEiJ_G0015709.1 mouse_genomes_project 1 98252176 98262302 + MGP_CASTEiJ_P0020820 Gin1 protein_coding protein_coding MGP_CASTEiJ_T0020821.1 MGP_CASTEiJ_G0015709.1 mouse_genomes_project 1 98252194 98275536 + MGP_CASTEiJ_P0020821 Gin1 protein_coding protein_coding MGP_CASTEiJ_T0020822.1 MGP_CASTEiJ_G0015709.1 mouse_genomes_project 1 98252198 98253023 + Gin1 protein_coding processed_transcript MGP_CASTEiJ_T0020823.1 MGP_CASTEiJ_G0015709.1 mouse_genomes_project 1 98252207 98274447 + MGP_CASTEiJ_P0020823 Gin1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020824.1 MGP_CASTEiJ_G0015709.1 mouse_genomes_project 1 98256733 98260214 + Gin1 protein_coding retained_intron MGP_CASTEiJ_T0020825.1 MGP_CASTEiJ_G0015709.1 mouse_genomes_project 1 98261572 98266072 + MGP_CASTEiJ_P0020825 Gin1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000590.1 MGP_CASTEiJ_G0000536.1 mouse_genomes_project 1 132090773 132092459 - TEC TEC MGP_CASTEiJ_T0099120.1 MGP_CASTEiJ_G0036033.1 mouse_genomes_project 1 138465264 138465353 + Gm24086 snRNA snRNA MGP_CASTEiJ_T0020110.1 MGP_CASTEiJ_G0015556.1 mouse_genomes_project 1 78615029 78618306 + MGP_CASTEiJ_P0020110 Kcne4 protein_coding protein_coding MGP_CASTEiJ_T0020111.1 MGP_CASTEiJ_G0015556.1 mouse_genomes_project 1 78615198 78618306 + MGP_CASTEiJ_P0020111 Kcne4 protein_coding protein_coding MGP_CASTEiJ_T0000400.1 MGP_CASTEiJ_G0000347.1 mouse_genomes_project 1 31673647 31674534 + TEC TEC MGP_CASTEiJ_T0000401.1 MGP_CASTEiJ_G0000347.1 mouse_genomes_project 1 31673666 31674534 + TEC TEC MGP_CASTEiJ_T0009319.1 MGP_CASTEiJ_G0007507.1 mouse_genomes_project 1 195405680 195405768 - miRNA miRNA MGP_CASTEiJ_T0010919.1 MGP_CASTEiJ_G0009107.1 mouse_genomes_project 1 69301081 69301356 - Gm22665 misc_RNA misc_RNA MGP_CASTEiJ_T0023366.1 MGP_CASTEiJ_G0016255.1 mouse_genomes_project 1 189430552 189441631 - MGP_CASTEiJ_P0023366 C130074G19Rik protein_coding protein_coding MGP_CASTEiJ_T0011997.1 MGP_CASTEiJ_G0010160.1 mouse_genomes_project 1 176472314 176472747 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023193.1 MGP_CASTEiJ_G0016216.1 mouse_genomes_project 1 185052778 185087214 + MGP_CASTEiJ_P0023193 Acbd3 protein_coding protein_coding MGP_CASTEiJ_T0023194.1 MGP_CASTEiJ_G0016216.1 mouse_genomes_project 1 185056565 185061217 + Acbd3 protein_coding retained_intron MGP_CASTEiJ_T0100289.1 MGP_CASTEiJ_G0037202.1 mouse_genomes_project 1 86018157 86018279 + Gm22786 snoRNA snoRNA MGP_CASTEiJ_T0002861.1 MGP_CASTEiJ_G0002697.1 mouse_genomes_project 1 183108272 183127088 - Gm16564 antisense antisense MGP_CASTEiJ_T0023520.1 MGP_CASTEiJ_G0016285.1 mouse_genomes_project 1 196147100 196161693 - MGP_CASTEiJ_P0023520 Atf3 protein_coding protein_coding MGP_CASTEiJ_T0023521.1 MGP_CASTEiJ_G0016285.1 mouse_genomes_project 1 196147100 196199563 - MGP_CASTEiJ_P0023521 Atf3 protein_coding protein_coding MGP_CASTEiJ_T0023522.1 MGP_CASTEiJ_G0016285.1 mouse_genomes_project 1 196148229 196161461 - Atf3 protein_coding processed_transcript MGP_CASTEiJ_T0012035.1 MGP_CASTEiJ_G0010198.1 mouse_genomes_project 1 198883198 198884128 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002849.1 MGP_CASTEiJ_G0002686.1 mouse_genomes_project 1 175277894 175279045 + Gm37787 antisense antisense MGP_CASTEiJ_T0023122.1 MGP_CASTEiJ_G0016207.1 mouse_genomes_project 1 184052741 184054044 + MGP_CASTEiJ_P0023122 Gm10518 protein_coding protein_coding MGP_CASTEiJ_T0019228.1 MGP_CASTEiJ_G0015399.1 mouse_genomes_project 1 57065931 57124507 + MGP_CASTEiJ_P0019228 Aox4 protein_coding protein_coding MGP_CASTEiJ_T0019229.1 MGP_CASTEiJ_G0015399.1 mouse_genomes_project 1 57065966 57116341 + Aox4 protein_coding processed_transcript MGP_CASTEiJ_T0019230.1 MGP_CASTEiJ_G0015399.1 mouse_genomes_project 1 57065985 57070991 + Aox4 protein_coding processed_transcript MGP_CASTEiJ_T0019231.1 MGP_CASTEiJ_G0015399.1 mouse_genomes_project 1 57066754 57068919 + Aox4 protein_coding retained_intron MGP_CASTEiJ_T0019232.1 MGP_CASTEiJ_G0015399.1 mouse_genomes_project 1 57096218 57101060 + Aox4 protein_coding retained_intron MGP_CASTEiJ_T0099147.1 MGP_CASTEiJ_G0036060.1 mouse_genomes_project 1 193586702 193586806 + Gm25269 snRNA snRNA MGP_CASTEiJ_T0020136.1 MGP_CASTEiJ_G0015563.1 mouse_genomes_project 1 80069088 80149751 - MGP_CASTEiJ_P0020136 Cul3 protein_coding protein_coding MGP_CASTEiJ_T0020137.1 MGP_CASTEiJ_G0015563.1 mouse_genomes_project 1 80070988 80149582 - MGP_CASTEiJ_P0020137 Cul3 protein_coding protein_coding MGP_CASTEiJ_T0020138.1 MGP_CASTEiJ_G0015563.1 mouse_genomes_project 1 80071112 80087148 - MGP_CASTEiJ_P0020138 Cul3 protein_coding protein_coding MGP_CASTEiJ_T0020139.1 MGP_CASTEiJ_G0015563.1 mouse_genomes_project 1 80071407 80086278 - Cul3 protein_coding retained_intron MGP_CASTEiJ_T0020140.1 MGP_CASTEiJ_G0015563.1 mouse_genomes_project 1 80096765 80149578 - MGP_CASTEiJ_P0020140 Cul3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020141.1 MGP_CASTEiJ_G0015563.1 mouse_genomes_project 1 80098543 80149550 - MGP_CASTEiJ_P0020141 Cul3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011738.1 MGP_CASTEiJ_G0009901.1 mouse_genomes_project 1 59828472 59829299 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0021574.1 MGP_CASTEiJ_G0015872.1 mouse_genomes_project 1 137030069 137034258 - MGP_CASTEiJ_P0021574 Shisa4 protein_coding protein_coding MGP_CASTEiJ_T0021575.1 MGP_CASTEiJ_G0015872.1 mouse_genomes_project 1 137030072 137032464 - Shisa4 protein_coding retained_intron MGP_CASTEiJ_T0021576.1 MGP_CASTEiJ_G0015872.1 mouse_genomes_project 1 137032908 137034098 - Shisa4 protein_coding retained_intron MGP_CASTEiJ_T0011903.1 MGP_CASTEiJ_G0010066.1 mouse_genomes_project 1 132616060 132617274 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0020638.1 MGP_CASTEiJ_G0015669.1 mouse_genomes_project 1 93047393 93048484 + MGP_CASTEiJ_P0020638 Olfr1412 protein_coding protein_coding MGP_CASTEiJ_T0018907.1 MGP_CASTEiJ_G0015339.1 mouse_genomes_project 1 42795721 42807912 - MGP_CASTEiJ_P0018907 Kdelc1 protein_coding protein_coding MGP_CASTEiJ_T0018908.1 MGP_CASTEiJ_G0015339.1 mouse_genomes_project 1 42796060 42807857 - Kdelc1 protein_coding retained_intron MGP_CASTEiJ_T0018909.1 MGP_CASTEiJ_G0015339.1 mouse_genomes_project 1 42796062 42807869 - MGP_CASTEiJ_P0018909 Kdelc1 protein_coding protein_coding MGP_CASTEiJ_T0018910.1 MGP_CASTEiJ_G0015339.1 mouse_genomes_project 1 42801229 42807869 - Kdelc1 protein_coding retained_intron MGP_CASTEiJ_T0018911.1 MGP_CASTEiJ_G0015339.1 mouse_genomes_project 1 42803922 42807805 - MGP_CASTEiJ_P0018911 Kdelc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022385.1 MGP_CASTEiJ_G0016017.1 mouse_genomes_project 1 166634059 166652810 - MGP_CASTEiJ_P0022385 Gorab protein_coding protein_coding MGP_CASTEiJ_T0022386.1 MGP_CASTEiJ_G0016017.1 mouse_genomes_project 1 166634063 166652797 - MGP_CASTEiJ_P0022386 Gorab protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022387.1 MGP_CASTEiJ_G0016017.1 mouse_genomes_project 1 166635309 166652816 - MGP_CASTEiJ_P0022387 Gorab protein_coding unknown_likely_coding MGP_CASTEiJ_T0022388.1 MGP_CASTEiJ_G0016017.1 mouse_genomes_project 1 166643546 166652752 - Gorab protein_coding retained_intron MGP_CASTEiJ_T0021814.1 MGP_CASTEiJ_G0015918.1 mouse_genomes_project 1 152352755 152467622 - MGP_CASTEiJ_P0021814 Pla2g4a protein_coding protein_coding MGP_CASTEiJ_T0021815.1 MGP_CASTEiJ_G0015918.1 mouse_genomes_project 1 152352766 152452306 - MGP_CASTEiJ_P0021815 Pla2g4a protein_coding protein_coding MGP_CASTEiJ_T0021816.1 MGP_CASTEiJ_G0015918.1 mouse_genomes_project 1 152410649 152495297 - MGP_CASTEiJ_P0021816 Pla2g4a protein_coding protein_coding MGP_CASTEiJ_T0021817.1 MGP_CASTEiJ_G0015918.1 mouse_genomes_project 1 152410689 152428912 - Pla2g4a protein_coding processed_transcript MGP_CASTEiJ_T0021818.1 MGP_CASTEiJ_G0015918.1 mouse_genomes_project 1 152448697 152495323 - Pla2g4a protein_coding retained_intron MGP_CASTEiJ_T0021819.1 MGP_CASTEiJ_G0015918.1 mouse_genomes_project 1 152467408 152495294 - Pla2g4a protein_coding processed_transcript MGP_CASTEiJ_T0019238.1 MGP_CASTEiJ_G0015402.1 mouse_genomes_project 1 57267493 57281291 - Clk1 protein_coding retained_intron MGP_CASTEiJ_T0019239.1 MGP_CASTEiJ_G0015402.1 mouse_genomes_project 1 57269304 57270737 - Clk1 protein_coding processed_transcript MGP_CASTEiJ_T0019240.1 MGP_CASTEiJ_G0015402.1 mouse_genomes_project 1 57269304 57270166 - Clk1 protein_coding processed_transcript MGP_CASTEiJ_T0019241.1 MGP_CASTEiJ_G0015402.1 mouse_genomes_project 1 57269304 57274036 - Clk1 protein_coding retained_intron MGP_CASTEiJ_T0019242.1 MGP_CASTEiJ_G0015402.1 mouse_genomes_project 1 57269304 57281291 - MGP_CASTEiJ_P0019242 Clk1 protein_coding protein_coding MGP_CASTEiJ_T0019243.1 MGP_CASTEiJ_G0015402.1 mouse_genomes_project 1 57269304 57281291 - MGP_CASTEiJ_P0019243 Clk1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019244.1 MGP_CASTEiJ_G0015402.1 mouse_genomes_project 1 57269304 57281291 - MGP_CASTEiJ_P0019244 Clk1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0019245.1 MGP_CASTEiJ_G0015402.1 mouse_genomes_project 1 57269620 57271095 - Clk1 protein_coding processed_transcript MGP_CASTEiJ_T0019246.1 MGP_CASTEiJ_G0015402.1 mouse_genomes_project 1 57271859 57277671 - Clk1 protein_coding retained_intron MGP_CASTEiJ_T0019247.1 MGP_CASTEiJ_G0015402.1 mouse_genomes_project 1 57271884 57278534 - Clk1 protein_coding retained_intron MGP_CASTEiJ_T0019248.1 MGP_CASTEiJ_G0015402.1 mouse_genomes_project 1 57273412 57281291 - Clk1 protein_coding retained_intron MGP_CASTEiJ_T0019249.1 MGP_CASTEiJ_G0015402.1 mouse_genomes_project 1 57274180 57274697 - Clk1 protein_coding retained_intron MGP_CASTEiJ_T0019250.1 MGP_CASTEiJ_G0015402.1 mouse_genomes_project 1 57278901 57281291 - Clk1 protein_coding retained_intron MGP_CASTEiJ_T0020294.1 MGP_CASTEiJ_G0015592.1 mouse_genomes_project 1 85993446 85999836 + protein_coding retained_intron MGP_CASTEiJ_T0020295.1 MGP_CASTEiJ_G0015592.1 mouse_genomes_project 1 85993446 86000725 + protein_coding processed_transcript MGP_CASTEiJ_T0020296.1 MGP_CASTEiJ_G0015592.1 mouse_genomes_project 1 85993678 86063427 + MGP_CASTEiJ_P0020296 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020297.1 MGP_CASTEiJ_G0015592.1 mouse_genomes_project 1 85993678 86070853 + MGP_CASTEiJ_P0020297 protein_coding protein_coding MGP_CASTEiJ_T0020298.1 MGP_CASTEiJ_G0015592.1 mouse_genomes_project 1 85993700 85996711 + protein_coding retained_intron MGP_CASTEiJ_T0020299.1 MGP_CASTEiJ_G0015592.1 mouse_genomes_project 1 85993751 86001349 + protein_coding retained_intron MGP_CASTEiJ_T0020300.1 MGP_CASTEiJ_G0015592.1 mouse_genomes_project 1 85993930 86006466 + protein_coding processed_transcript MGP_CASTEiJ_T0020303.1 MGP_CASTEiJ_G0015592.1 mouse_genomes_project 1 86041550 86063478 + protein_coding processed_transcript MGP_CASTEiJ_T0020304.1 MGP_CASTEiJ_G0015592.1 mouse_genomes_project 1 86058575 86063445 + protein_coding retained_intron MGP_CASTEiJ_T0100309.1 MGP_CASTEiJ_G0037222.1 mouse_genomes_project 1 128570578 128570687 + Gm23734 snoRNA snoRNA MGP_CASTEiJ_T0000641.1 MGP_CASTEiJ_G0000585.1 mouse_genomes_project 1 151965658 151967939 - TEC TEC MGP_CASTEiJ_T0005756.1 MGP_CASTEiJ_G0004841.1 mouse_genomes_project 1 138369338 138371876 - Platr23 lincRNA lincRNA MGP_CASTEiJ_T0011821.1 MGP_CASTEiJ_G0009984.1 mouse_genomes_project 1 98750929 98751913 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000772.1 MGP_CASTEiJ_G0000713.1 mouse_genomes_project 1 200140359 200142591 - TEC TEC MGP_CASTEiJ_T0005822.1 MGP_CASTEiJ_G0004891.1 mouse_genomes_project 1 169692790 169694838 - Gm15853 lincRNA lincRNA MGP_CASTEiJ_T0100268.1 MGP_CASTEiJ_G0037181.1 mouse_genomes_project 1 41465825 41465959 - Gm23126 snoRNA snoRNA MGP_CASTEiJ_T0009266.1 MGP_CASTEiJ_G0007454.1 mouse_genomes_project 1 84237770 84237883 - Mir6353 miRNA miRNA MGP_CASTEiJ_T0018116.1 MGP_CASTEiJ_G0015181.1 mouse_genomes_project 1 7229870 7264531 + MGP_CASTEiJ_P0018116 Mcmdc2 protein_coding protein_coding MGP_CASTEiJ_T0018117.1 MGP_CASTEiJ_G0015181.1 mouse_genomes_project 1 7229870 7244977 + MGP_CASTEiJ_P0018117 Mcmdc2 protein_coding protein_coding MGP_CASTEiJ_T0018118.1 MGP_CASTEiJ_G0015181.1 mouse_genomes_project 1 7229900 7264028 + MGP_CASTEiJ_P0018118 Mcmdc2 protein_coding protein_coding MGP_CASTEiJ_T0018119.1 MGP_CASTEiJ_G0015181.1 mouse_genomes_project 1 7229902 7265660 + MGP_CASTEiJ_P0018119 Mcmdc2 protein_coding protein_coding MGP_CASTEiJ_T0018120.1 MGP_CASTEiJ_G0015181.1 mouse_genomes_project 1 7232585 7243711 + MGP_CASTEiJ_P0018120 Mcmdc2 protein_coding protein_coding MGP_CASTEiJ_T0018121.1 MGP_CASTEiJ_G0015181.1 mouse_genomes_project 1 7232990 7260608 + MGP_CASTEiJ_P0018121 Mcmdc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0018122.1 MGP_CASTEiJ_G0015181.1 mouse_genomes_project 1 7255886 7264531 + MGP_CASTEiJ_P0018122 Mcmdc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022497.1 MGP_CASTEiJ_G0016043.1 mouse_genomes_project 1 169073028 169085132 + MGP_CASTEiJ_P0022497 Creg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022498.1 MGP_CASTEiJ_G0016043.1 mouse_genomes_project 1 169073028 169085132 + MGP_CASTEiJ_P0022498 Creg1 protein_coding protein_coding MGP_CASTEiJ_T0022499.1 MGP_CASTEiJ_G0016043.1 mouse_genomes_project 1 169078481 169083744 + MGP_CASTEiJ_P0022499 Creg1 protein_coding protein_coding MGP_CASTEiJ_T0011708.1 MGP_CASTEiJ_G0009871.1 mouse_genomes_project 1 51014407 51015802 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011936.1 MGP_CASTEiJ_G0010099.1 mouse_genomes_project 1 151544690 151546708 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005846.1 MGP_CASTEiJ_G0004912.1 mouse_genomes_project 1 186072647 186098741 + lincRNA lincRNA MGP_CASTEiJ_T0005847.1 MGP_CASTEiJ_G0004912.1 mouse_genomes_project 1 186072673 186087092 + lincRNA lincRNA MGP_CASTEiJ_T0022642.1 MGP_CASTEiJ_G0016079.1 mouse_genomes_project 1 174382948 174394405 - MGP_CASTEiJ_P0022642 Dusp12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022643.1 MGP_CASTEiJ_G0016079.1 mouse_genomes_project 1 174383628 174394147 - MGP_CASTEiJ_P0022643 Dusp12 protein_coding protein_coding MGP_CASTEiJ_T0022644.1 MGP_CASTEiJ_G0016079.1 mouse_genomes_project 1 174383628 174394343 - MGP_CASTEiJ_P0022644 Dusp12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022645.1 MGP_CASTEiJ_G0016079.1 mouse_genomes_project 1 174383628 174394488 - MGP_CASTEiJ_P0022645 Dusp12 protein_coding protein_coding MGP_CASTEiJ_T0022646.1 MGP_CASTEiJ_G0016079.1 mouse_genomes_project 1 174383629 174394355 - MGP_CASTEiJ_P0022646 Dusp12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022647.1 MGP_CASTEiJ_G0016079.1 mouse_genomes_project 1 174383961 174394344 - MGP_CASTEiJ_P0022647 Dusp12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0022648.1 MGP_CASTEiJ_G0016079.1 mouse_genomes_project 1 174389472 174393952 - MGP_CASTEiJ_P0022648 Dusp12 protein_coding protein_coding MGP_CASTEiJ_T0022681.1 MGP_CASTEiJ_G0016089.1 mouse_genomes_project 1 174707513 174731257 - MGP_CASTEiJ_P0022681 Pcp4l1 protein_coding protein_coding MGP_CASTEiJ_T0023666.1 MGP_CASTEiJ_G0016312.1 mouse_genomes_project 1 200157943 200196234 - MGP_CASTEiJ_P0023666 Cr1l protein_coding protein_coding MGP_CASTEiJ_T0023667.1 MGP_CASTEiJ_G0016312.1 mouse_genomes_project 1 200159220 200196213 - MGP_CASTEiJ_P0023667 Cr1l protein_coding protein_coding MGP_CASTEiJ_T0023668.1 MGP_CASTEiJ_G0016312.1 mouse_genomes_project 1 200167791 200171465 - Cr1l protein_coding retained_intron MGP_CASTEiJ_T0023669.1 MGP_CASTEiJ_G0016312.1 mouse_genomes_project 1 200167887 200196451 - MGP_CASTEiJ_P0023669 Cr1l protein_coding protein_coding MGP_CASTEiJ_T0023670.1 MGP_CASTEiJ_G0016312.1 mouse_genomes_project 1 200167893 200181910 - MGP_CASTEiJ_P0023670 Cr1l protein_coding protein_coding MGP_CASTEiJ_T0023671.1 MGP_CASTEiJ_G0016312.1 mouse_genomes_project 1 200178757 200194352 - Cr1l protein_coding retained_intron MGP_CASTEiJ_T0023672.1 MGP_CASTEiJ_G0016312.1 mouse_genomes_project 1 200178884 200196476 - MGP_CASTEiJ_P0023672 Cr1l protein_coding protein_coding MGP_CASTEiJ_T0023673.1 MGP_CASTEiJ_G0016312.1 mouse_genomes_project 1 200190800 200196424 - Cr1l protein_coding retained_intron MGP_CASTEiJ_T0023674.1 MGP_CASTEiJ_G0016312.1 mouse_genomes_project 1 200194083 200196220 - MGP_CASTEiJ_P0023674 Cr1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023675.1 MGP_CASTEiJ_G0016312.1 mouse_genomes_project 1 200194535 200196245 - Cr1l protein_coding retained_intron MGP_CASTEiJ_T0011934.1 MGP_CASTEiJ_G0010097.1 mouse_genomes_project 1 151442994 151443219 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101928.1 MGP_CASTEiJ_G0038653.1 mouse_genomes_project 1 102903947 102998390 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002718.1 MGP_CASTEiJ_G0002587.1 mouse_genomes_project 1 61543381 61584935 - Pard3bos3 antisense antisense MGP_CASTEiJ_T0000316.1 MGP_CASTEiJ_G0000265.1 mouse_genomes_project 1 548385 551204 - TEC TEC MGP_CASTEiJ_T0098788.1 MGP_CASTEiJ_G0035719.1 mouse_genomes_project 1 69035415 69037819 - Gm28112 sense_intronic sense_intronic MGP_CASTEiJ_T0020188.1 MGP_CASTEiJ_G0015573.1 mouse_genomes_project 1 82709528 82721330 - MGP_CASTEiJ_P0020188 Tm4sf20 protein_coding protein_coding MGP_CASTEiJ_T0020189.1 MGP_CASTEiJ_G0015573.1 mouse_genomes_project 1 82710287 82721330 - Tm4sf20 protein_coding processed_transcript MGP_CASTEiJ_T0000343.1 MGP_CASTEiJ_G0000292.1 mouse_genomes_project 1 9065132 9067268 + TEC TEC MGP_CASTEiJ_T0019689.1 MGP_CASTEiJ_G0015483.1 mouse_genomes_project 1 71799907 71821149 + MGP_CASTEiJ_P0019689 Tmem169 protein_coding protein_coding MGP_CASTEiJ_T0019690.1 MGP_CASTEiJ_G0015483.1 mouse_genomes_project 1 71799933 71818813 + MGP_CASTEiJ_P0019690 Tmem169 protein_coding protein_coding MGP_CASTEiJ_T0101490.1 MGP_CASTEiJ_G0038398.1 mouse_genomes_project 1 159733773 159736407 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101491.1 MGP_CASTEiJ_G0038398.1 mouse_genomes_project 1 159734095 159734422 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0021408.1 MGP_CASTEiJ_G0015833.1 mouse_genomes_project 1 134813706 134834899 + MGP_CASTEiJ_P0021408 protein_coding protein_coding MGP_CASTEiJ_T0021409.1 MGP_CASTEiJ_G0015833.1 mouse_genomes_project 1 134813706 134835107 + MGP_CASTEiJ_P0021409 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0021411.1 MGP_CASTEiJ_G0015833.1 mouse_genomes_project 1 134827099 134835107 + MGP_CASTEiJ_P0021411 protein_coding protein_coding MGP_CASTEiJ_T0021413.1 MGP_CASTEiJ_G0015833.1 mouse_genomes_project 1 134832429 134834927 + MGP_CASTEiJ_P0021413 protein_coding protein_coding MGP_CASTEiJ_T0018225.1 MGP_CASTEiJ_G0015196.1 mouse_genomes_project 1 11097009 11139913 + MGP_CASTEiJ_P0018225 Xkr9 protein_coding protein_coding MGP_CASTEiJ_T0000522.1 MGP_CASTEiJ_G0000468.1 mouse_genomes_project 1 87910223 87911038 + TEC TEC MGP_CASTEiJ_T0010929.1 MGP_CASTEiJ_G0009117.1 mouse_genomes_project 1 176375834 176376161 - Gm22383 misc_RNA misc_RNA MGP_CASTEiJ_T0005532.1 MGP_CASTEiJ_G0004667.1 mouse_genomes_project 1 34113877 34118252 - Gm37146 lincRNA lincRNA MGP_CASTEiJ_T0000684.1 MGP_CASTEiJ_G0000628.1 mouse_genomes_project 1 164143064 164144232 + TEC TEC MGP_CASTEiJ_T0000673.1 MGP_CASTEiJ_G0000617.1 mouse_genomes_project 1 163436139 163437301 - TEC TEC MGP_CASTEiJ_T0018339.1 MGP_CASTEiJ_G0015226.1 mouse_genomes_project 1 18520016 18523686 + Efhc1 protein_coding processed_transcript MGP_CASTEiJ_T0018340.1 MGP_CASTEiJ_G0015226.1 mouse_genomes_project 1 18520078 18563987 + MGP_CASTEiJ_P0018340 Efhc1 protein_coding protein_coding MGP_CASTEiJ_T0021143.1 MGP_CASTEiJ_G0015776.1 mouse_genomes_project 1 129311089 129394447 + R3hdm1 protein_coding retained_intron MGP_CASTEiJ_T0021144.1 MGP_CASTEiJ_G0015776.1 mouse_genomes_project 1 129311109 129390447 + MGP_CASTEiJ_P0021144 R3hdm1 protein_coding protein_coding MGP_CASTEiJ_T0021145.1 MGP_CASTEiJ_G0015776.1 mouse_genomes_project 1 129311112 129400141 + MGP_CASTEiJ_P0021145 R3hdm1 protein_coding protein_coding MGP_CASTEiJ_T0021146.1 MGP_CASTEiJ_G0015776.1 mouse_genomes_project 1 129311112 129449724 + MGP_CASTEiJ_P0021146 R3hdm1 protein_coding protein_coding MGP_CASTEiJ_T0021147.1 MGP_CASTEiJ_G0015776.1 mouse_genomes_project 1 129311119 129319578 + R3hdm1 protein_coding retained_intron MGP_CASTEiJ_T0021148.1 MGP_CASTEiJ_G0015776.1 mouse_genomes_project 1 129351881 129398190 + MGP_CASTEiJ_P0021148 R3hdm1 protein_coding protein_coding MGP_CASTEiJ_T0021149.1 MGP_CASTEiJ_G0015776.1 mouse_genomes_project 1 129351904 129363284 + MGP_CASTEiJ_P0021149 R3hdm1 protein_coding protein_coding MGP_CASTEiJ_T0021150.1 MGP_CASTEiJ_G0015776.1 mouse_genomes_project 1 129361771 129390500 + MGP_CASTEiJ_P0021150 R3hdm1 protein_coding protein_coding MGP_CASTEiJ_T0021151.1 MGP_CASTEiJ_G0015776.1 mouse_genomes_project 1 129382055 129389461 + R3hdm1 protein_coding retained_intron MGP_CASTEiJ_T0021152.1 MGP_CASTEiJ_G0015776.1 mouse_genomes_project 1 129385982 129390435 + R3hdm1 protein_coding retained_intron MGP_CASTEiJ_T0021153.1 MGP_CASTEiJ_G0015776.1 mouse_genomes_project 1 129388154 129399941 + R3hdm1 protein_coding retained_intron MGP_CASTEiJ_T0021154.1 MGP_CASTEiJ_G0015776.1 mouse_genomes_project 1 129390460 129405763 + MGP_CASTEiJ_P0021154 R3hdm1 protein_coding protein_coding MGP_CASTEiJ_T0021155.1 MGP_CASTEiJ_G0015776.1 mouse_genomes_project 1 129393055 129423297 + MGP_CASTEiJ_P0021155 R3hdm1 protein_coding protein_coding MGP_CASTEiJ_T0021156.1 MGP_CASTEiJ_G0015776.1 mouse_genomes_project 1 129404105 129408806 + R3hdm1 protein_coding retained_intron MGP_CASTEiJ_T0021157.1 MGP_CASTEiJ_G0015776.1 mouse_genomes_project 1 129419264 129449723 + R3hdm1 protein_coding retained_intron MGP_CASTEiJ_T0021158.1 MGP_CASTEiJ_G0015776.1 mouse_genomes_project 1 129447366 129449724 + R3hdm1 protein_coding retained_intron MGP_CASTEiJ_T0000593.1 MGP_CASTEiJ_G0000539.1 mouse_genomes_project 1 133328533 133330441 + TEC TEC MGP_CASTEiJ_T0011851.1 MGP_CASTEiJ_G0010014.1 mouse_genomes_project 1 109540810 109542677 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016259.1 MGP_CASTEiJ_G0014410.1 mouse_genomes_project 1 42775464 42799191 - Gm29247 processed_transcript processed_transcript MGP_CASTEiJ_T0016260.1 MGP_CASTEiJ_G0014410.1 mouse_genomes_project 1 42775565 42799935 - Gm29247 processed_transcript processed_transcript MGP_CASTEiJ_T0011969.1 MGP_CASTEiJ_G0010132.1 mouse_genomes_project 1 164963257 164964852 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000726.1 MGP_CASTEiJ_G0000669.1 mouse_genomes_project 1 184659430 184666801 + TEC TEC MGP_CASTEiJ_T0011674.1 MGP_CASTEiJ_G0009837.1 mouse_genomes_project 1 43526636 43527201 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0019297.1 MGP_CASTEiJ_G0015411.1 mouse_genomes_project 1 57777609 57844539 - MGP_CASTEiJ_P0019297 Trak2 protein_coding protein_coding MGP_CASTEiJ_T0019298.1 MGP_CASTEiJ_G0015411.1 mouse_genomes_project 1 57780822 57785901 - Trak2 protein_coding retained_intron MGP_CASTEiJ_T0019299.1 MGP_CASTEiJ_G0015411.1 mouse_genomes_project 1 57800401 57802205 - Trak2 protein_coding processed_transcript MGP_CASTEiJ_T0019300.1 MGP_CASTEiJ_G0015411.1 mouse_genomes_project 1 57806878 57844473 - MGP_CASTEiJ_P0019300 Trak2 protein_coding protein_coding MGP_CASTEiJ_T0019301.1 MGP_CASTEiJ_G0015411.1 mouse_genomes_project 1 57817036 57844474 - Trak2 protein_coding retained_intron MGP_CASTEiJ_T0011957.1 MGP_CASTEiJ_G0010120.1 mouse_genomes_project 1 159089365 159089566 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000406.1 MGP_CASTEiJ_G0000352.1 mouse_genomes_project 1 32057927 32059384 + TEC TEC MGP_CASTEiJ_T0022445.1 MGP_CASTEiJ_G0016032.1 mouse_genomes_project 1 168101176 168129929 + MGP_CASTEiJ_P0022445 Dpt protein_coding protein_coding MGP_CASTEiJ_T0023642.1 MGP_CASTEiJ_G0016307.1 mouse_genomes_project 1 198274751 198275782 - MGP_CASTEiJ_P0023642 G0s2 protein_coding protein_coding MGP_CASTEiJ_T0000417.1 MGP_CASTEiJ_G0000363.1 mouse_genomes_project 1 35878114 35880042 + TEC TEC MGP_CASTEiJ_T0099111.1 MGP_CASTEiJ_G0036024.1 mouse_genomes_project 1 123458391 123458540 + Gm24547 snRNA snRNA MGP_CASTEiJ_T0010910.1 MGP_CASTEiJ_G0009098.1 mouse_genomes_project 1 13321889 13322192 + Gm23259 misc_RNA misc_RNA MGP_CASTEiJ_T0022082.1 MGP_CASTEiJ_G0015966.1 mouse_genomes_project 1 158971356 159064131 - MGP_CASTEiJ_P0022082 Fam163a protein_coding protein_coding MGP_CASTEiJ_T0005860.1 MGP_CASTEiJ_G0004922.1 mouse_genomes_project 1 188873490 188911280 + Gm37223 lincRNA lincRNA MGP_CASTEiJ_T0005861.1 MGP_CASTEiJ_G0004922.1 mouse_genomes_project 1 188873490 188911251 + Gm37223 lincRNA lincRNA MGP_CASTEiJ_T0005862.1 MGP_CASTEiJ_G0004922.1 mouse_genomes_project 1 188873490 188911283 + Gm37223 lincRNA lincRNA MGP_CASTEiJ_T0005863.1 MGP_CASTEiJ_G0004922.1 mouse_genomes_project 1 188873494 188914941 + Gm37223 lincRNA lincRNA MGP_CASTEiJ_T0005864.1 MGP_CASTEiJ_G0004922.1 mouse_genomes_project 1 188873505 188914970 + Gm37223 lincRNA lincRNA MGP_CASTEiJ_T0005866.1 MGP_CASTEiJ_G0004922.1 mouse_genomes_project 1 188903322 188914941 + Gm37223 lincRNA lincRNA MGP_CASTEiJ_T0021395.1 MGP_CASTEiJ_G0015829.1 mouse_genomes_project 1 134621842 134633199 + MGP_CASTEiJ_P0021395 Ppp1r15b protein_coding protein_coding MGP_CASTEiJ_T0021396.1 MGP_CASTEiJ_G0015829.1 mouse_genomes_project 1 134622043 134633199 + Ppp1r15b protein_coding processed_transcript MGP_CASTEiJ_T0099079.1 MGP_CASTEiJ_G0035992.1 mouse_genomes_project 1 31409438 31409544 + Gm23453 snRNA snRNA MGP_CASTEiJ_T0005708.1 MGP_CASTEiJ_G0004800.1 mouse_genomes_project 1 112173896 112174392 - lincRNA lincRNA MGP_CASTEiJ_T0020253.1 MGP_CASTEiJ_G0015584.1 mouse_genomes_project 1 85572301 85605109 + MGP_CASTEiJ_P0020253 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0020254.1 MGP_CASTEiJ_G0015584.1 mouse_genomes_project 1 85572301 85617711 + MGP_CASTEiJ_P0020254 protein_coding protein_coding MGP_CASTEiJ_T0020255.1 MGP_CASTEiJ_G0015584.1 mouse_genomes_project 1 85572301 85610123 + MGP_CASTEiJ_P0020255 protein_coding protein_coding MGP_CASTEiJ_T0020256.1 MGP_CASTEiJ_G0015584.1 mouse_genomes_project 1 85572301 85592081 + MGP_CASTEiJ_P0020256 protein_coding protein_coding MGP_CASTEiJ_T0020257.1 MGP_CASTEiJ_G0015584.1 mouse_genomes_project 1 85572301 85618466 + MGP_CASTEiJ_P0020257 protein_coding protein_coding MGP_CASTEiJ_T0020258.1 MGP_CASTEiJ_G0015584.1 mouse_genomes_project 1 85572301 85610112 + MGP_CASTEiJ_P0020258 protein_coding protein_coding MGP_CASTEiJ_T0020259.1 MGP_CASTEiJ_G0015584.1 mouse_genomes_project 1 85581111 85591705 + protein_coding processed_transcript MGP_CASTEiJ_T0020260.1 MGP_CASTEiJ_G0015584.1 mouse_genomes_project 1 85583001 85588325 + protein_coding retained_intron MGP_CASTEiJ_T0020261.1 MGP_CASTEiJ_G0015584.1 mouse_genomes_project 1 85602679 85608222 + protein_coding retained_intron MGP_CASTEiJ_T0020262.1 MGP_CASTEiJ_G0015584.1 mouse_genomes_project 1 85603037 85617919 + MGP_CASTEiJ_P0020262 protein_coding protein_coding MGP_CASTEiJ_T0020263.1 MGP_CASTEiJ_G0015584.1 mouse_genomes_project 1 85611995 85616506 + MGP_CASTEiJ_P0020263 protein_coding protein_coding MGP_CASTEiJ_T0011860.1 MGP_CASTEiJ_G0010023.1 mouse_genomes_project 1 112960486 112961325 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000465.1 MGP_CASTEiJ_G0000411.1 mouse_genomes_project 1 65995806 65998820 - TEC TEC MGP_CASTEiJ_T0018322.1 MGP_CASTEiJ_G0015221.1 mouse_genomes_project 1 17613218 18174250 - MGP_CASTEiJ_P0018322 Pkhd1 protein_coding protein_coding MGP_CASTEiJ_T0018323.1 MGP_CASTEiJ_G0015221.1 mouse_genomes_project 1 17934153 17972890 - Pkhd1 protein_coding processed_transcript MGP_CASTEiJ_T0018324.1 MGP_CASTEiJ_G0015221.1 mouse_genomes_project 1 18148180 18174250 - Pkhd1 protein_coding retained_intron MGP_CASTEiJ_T0018325.1 MGP_CASTEiJ_G0015221.1 mouse_genomes_project 1 18161278 18174226 - Pkhd1 protein_coding processed_transcript MGP_CASTEiJ_T0018002.1 MGP_CASTEiJ_G0015162.1 mouse_genomes_project 1 2018238 2033191 - MGP_CASTEiJ_P0018002 Mrpl15 protein_coding protein_coding MGP_CASTEiJ_T0018003.1 MGP_CASTEiJ_G0015162.1 mouse_genomes_project 1 2018243 2033220 - MGP_CASTEiJ_P0018003 Mrpl15 protein_coding protein_coding MGP_CASTEiJ_T0018004.1 MGP_CASTEiJ_G0015162.1 mouse_genomes_project 1 2019416 2033179 - MGP_CASTEiJ_P0018004 Mrpl15 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0018005.1 MGP_CASTEiJ_G0015162.1 mouse_genomes_project 1 2021368 2033220 - Mrpl15 protein_coding processed_transcript MGP_CASTEiJ_T0018006.1 MGP_CASTEiJ_G0015162.1 mouse_genomes_project 1 2027504 2032035 - Mrpl15 protein_coding retained_intron MGP_CASTEiJ_T0018007.1 MGP_CASTEiJ_G0015162.1 mouse_genomes_project 1 2028758 2033220 - MGP_CASTEiJ_P0018007 Mrpl15 protein_coding protein_coding MGP_CASTEiJ_T0018008.1 MGP_CASTEiJ_G0015162.1 mouse_genomes_project 1 2031041 2033173 - Mrpl15 protein_coding retained_intron MGP_CASTEiJ_T0099121.1 MGP_CASTEiJ_G0036034.1 mouse_genomes_project 1 138809718 138809778 - Gm23763 snRNA snRNA MGP_CASTEiJ_T0020466.1 MGP_CASTEiJ_G0015625.1 mouse_genomes_project 1 88094439 88334465 + MGP_CASTEiJ_P0020466 Ugt1a10 protein_coding protein_coding MGP_CASTEiJ_T0020467.1 MGP_CASTEiJ_G0015625.1 mouse_genomes_project 1 88094462 88339179 + MGP_CASTEiJ_P0020467 Ugt1a10 protein_coding protein_coding MGP_CASTEiJ_T0020468.1 MGP_CASTEiJ_G0015625.1 mouse_genomes_project 1 88094531 88334397 + MGP_CASTEiJ_P0020468 Ugt1a10 protein_coding protein_coding MGP_CASTEiJ_T0005731.1 MGP_CASTEiJ_G0004817.1 mouse_genomes_project 1 122225974 122231878 - 2210011K15Rik lincRNA lincRNA MGP_CASTEiJ_T0002711.1 MGP_CASTEiJ_G0002582.1 mouse_genomes_project 1 58028621 58045866 + Gm29017 antisense antisense MGP_CASTEiJ_T0000662.1 MGP_CASTEiJ_G0000606.1 mouse_genomes_project 1 159770072 159773917 - TEC TEC MGP_CASTEiJ_T0023555.1 MGP_CASTEiJ_G0016293.1 mouse_genomes_project 1 196930339 196936810 + MGP_CASTEiJ_P0023555 Slc30a1 protein_coding protein_coding MGP_CASTEiJ_T0023556.1 MGP_CASTEiJ_G0016293.1 mouse_genomes_project 1 196930828 196932742 + MGP_CASTEiJ_P0023556 Slc30a1 protein_coding protein_coding MGP_CASTEiJ_T0002827.1 MGP_CASTEiJ_G0002671.1 mouse_genomes_project 1 165224715 165236848 + 2810442N19Rik antisense antisense MGP_CASTEiJ_T0002828.1 MGP_CASTEiJ_G0002671.1 mouse_genomes_project 1 165224918 165236857 + 2810442N19Rik antisense antisense MGP_CASTEiJ_T0099143.1 MGP_CASTEiJ_G0036056.1 mouse_genomes_project 1 182829063 182829230 + Gm24405 snRNA snRNA MGP_CASTEiJ_T0013134.1 MGP_CASTEiJ_G0011297.1 mouse_genomes_project 2 51441765 51442048 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059668.1 MGP_CASTEiJ_G0026172.1 mouse_genomes_project 2 183403877 183410470 + MGP_CASTEiJ_P0059668 Ogfr protein_coding protein_coding MGP_CASTEiJ_T0059669.1 MGP_CASTEiJ_G0026172.1 mouse_genomes_project 2 183404094 183408483 + Ogfr protein_coding retained_intron MGP_CASTEiJ_T0001005.1 MGP_CASTEiJ_G0000941.1 mouse_genomes_project 2 12023741 12025151 + TEC TEC MGP_CASTEiJ_T0058986.1 MGP_CASTEiJ_G0026001.1 mouse_genomes_project 2 167539621 167545925 - MGP_CASTEiJ_P0058986 Fitm2 protein_coding protein_coding MGP_CASTEiJ_T0016998.1 MGP_CASTEiJ_G0014715.1 mouse_genomes_project 2 23963601 23983010 + Gm13562 processed_transcript processed_transcript MGP_CASTEiJ_T0016999.1 MGP_CASTEiJ_G0014715.1 mouse_genomes_project 2 23976524 23980791 + Gm13562 processed_transcript processed_transcript MGP_CASTEiJ_T0059508.1 MGP_CASTEiJ_G0026132.1 mouse_genomes_project 2 178206306 178260715 - MGP_CASTEiJ_P0059508 Pmepa1 protein_coding protein_coding MGP_CASTEiJ_T0059509.1 MGP_CASTEiJ_G0026132.1 mouse_genomes_project 2 178209499 178260417 - MGP_CASTEiJ_P0059509 Pmepa1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059510.1 MGP_CASTEiJ_G0026132.1 mouse_genomes_project 2 178209889 178260371 - MGP_CASTEiJ_P0059510 Pmepa1 protein_coding protein_coding MGP_CASTEiJ_T0059511.1 MGP_CASTEiJ_G0026132.1 mouse_genomes_project 2 178210054 178216567 - Pmepa1 protein_coding retained_intron MGP_CASTEiJ_T0010095.1 MGP_CASTEiJ_G0008283.1 mouse_genomes_project 2 15552701 15552827 - Gm23638 miRNA miRNA MGP_CASTEiJ_T0059071.1 MGP_CASTEiJ_G0026032.1 mouse_genomes_project 2 168632156 168636824 + MGP_CASTEiJ_P0059071 Dbndd2 protein_coding protein_coding MGP_CASTEiJ_T0059072.1 MGP_CASTEiJ_G0026032.1 mouse_genomes_project 2 168632505 168637284 + MGP_CASTEiJ_P0059072 Dbndd2 protein_coding protein_coding MGP_CASTEiJ_T0059073.1 MGP_CASTEiJ_G0026032.1 mouse_genomes_project 2 168632505 168636824 + MGP_CASTEiJ_P0059073 Dbndd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059074.1 MGP_CASTEiJ_G0026032.1 mouse_genomes_project 2 168632531 168636273 + MGP_CASTEiJ_P0059074 Dbndd2 protein_coding protein_coding MGP_CASTEiJ_T0059075.1 MGP_CASTEiJ_G0026032.1 mouse_genomes_project 2 168632927 168639304 + MGP_CASTEiJ_P0059075 Dbndd2 protein_coding protein_coding MGP_CASTEiJ_T0059076.1 MGP_CASTEiJ_G0026032.1 mouse_genomes_project 2 168633879 168636824 + MGP_CASTEiJ_P0059076 Dbndd2 protein_coding protein_coding MGP_CASTEiJ_T0010069.1 MGP_CASTEiJ_G0008257.1 mouse_genomes_project 2 7743813 7743940 + Gm22091 miRNA miRNA MGP_CASTEiJ_T0059821.1 MGP_CASTEiJ_G0026199.1 mouse_genomes_project 2 184260082 184335940 - MGP_CASTEiJ_P0059821 Zbtb46 protein_coding protein_coding MGP_CASTEiJ_T0059822.1 MGP_CASTEiJ_G0026199.1 mouse_genomes_project 2 184263205 184301297 - MGP_CASTEiJ_P0059822 Zbtb46 protein_coding protein_coding MGP_CASTEiJ_T0059823.1 MGP_CASTEiJ_G0026199.1 mouse_genomes_project 2 184282774 184335940 - MGP_CASTEiJ_P0059823 Zbtb46 protein_coding protein_coding MGP_CASTEiJ_T0059824.1 MGP_CASTEiJ_G0026199.1 mouse_genomes_project 2 184298430 184335940 - Zbtb46 protein_coding retained_intron MGP_CASTEiJ_T0059825.1 MGP_CASTEiJ_G0026199.1 mouse_genomes_project 2 184301136 184335801 - MGP_CASTEiJ_P0059825 Zbtb46 protein_coding protein_coding MGP_CASTEiJ_T0056237.1 MGP_CASTEiJ_G0025373.1 mouse_genomes_project 2 97405962 98762442 + MGP_CASTEiJ_P0056237 Lrrc4c protein_coding protein_coding MGP_CASTEiJ_T0056238.1 MGP_CASTEiJ_G0025373.1 mouse_genomes_project 2 97406009 98761771 + MGP_CASTEiJ_P0056238 Lrrc4c protein_coding protein_coding MGP_CASTEiJ_T0056239.1 MGP_CASTEiJ_G0025373.1 mouse_genomes_project 2 98577291 98762440 + MGP_CASTEiJ_P0056239 Lrrc4c protein_coding protein_coding MGP_CASTEiJ_T0056240.1 MGP_CASTEiJ_G0025373.1 mouse_genomes_project 2 98577725 98759851 + MGP_CASTEiJ_P0056240 Lrrc4c protein_coding protein_coding MGP_CASTEiJ_T0056190.1 MGP_CASTEiJ_G0025365.1 mouse_genomes_project 2 94914107 94929914 - MGP_CASTEiJ_P0056190 Accs protein_coding protein_coding MGP_CASTEiJ_T0056191.1 MGP_CASTEiJ_G0025365.1 mouse_genomes_project 2 94914107 94929796 - MGP_CASTEiJ_P0056191 Accs protein_coding protein_coding MGP_CASTEiJ_T0056192.1 MGP_CASTEiJ_G0025365.1 mouse_genomes_project 2 94914657 94918021 - Accs protein_coding retained_intron MGP_CASTEiJ_T0056193.1 MGP_CASTEiJ_G0025365.1 mouse_genomes_project 2 94915691 94930058 - Accs protein_coding retained_intron MGP_CASTEiJ_T0056194.1 MGP_CASTEiJ_G0025365.1 mouse_genomes_project 2 94916685 94928056 - MGP_CASTEiJ_P0056194 Accs protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056195.1 MGP_CASTEiJ_G0025365.1 mouse_genomes_project 2 94917854 94920950 - Accs protein_coding retained_intron MGP_CASTEiJ_T0056196.1 MGP_CASTEiJ_G0025365.1 mouse_genomes_project 2 94919961 94921063 - Accs protein_coding retained_intron MGP_CASTEiJ_T0056197.1 MGP_CASTEiJ_G0025365.1 mouse_genomes_project 2 94921249 94929931 - MGP_CASTEiJ_P0056197 Accs protein_coding protein_coding MGP_CASTEiJ_T0056198.1 MGP_CASTEiJ_G0025365.1 mouse_genomes_project 2 94921479 94930054 - Accs protein_coding retained_intron MGP_CASTEiJ_T0056199.1 MGP_CASTEiJ_G0025365.1 mouse_genomes_project 2 94921490 94930054 - Accs protein_coding retained_intron MGP_CASTEiJ_T0056200.1 MGP_CASTEiJ_G0025365.1 mouse_genomes_project 2 94923704 94925934 - Accs protein_coding processed_transcript MGP_CASTEiJ_T0057105.1 MGP_CASTEiJ_G0025572.1 mouse_genomes_project 2 123356010 123380304 - MGP_CASTEiJ_P0057105 Catsper2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057106.1 MGP_CASTEiJ_G0025572.1 mouse_genomes_project 2 123356013 123380218 - MGP_CASTEiJ_P0057106 Catsper2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057107.1 MGP_CASTEiJ_G0025572.1 mouse_genomes_project 2 123356013 123380467 - MGP_CASTEiJ_P0057107 Catsper2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057108.1 MGP_CASTEiJ_G0025572.1 mouse_genomes_project 2 123357735 123380487 - MGP_CASTEiJ_P0057108 Catsper2 protein_coding protein_coding MGP_CASTEiJ_T0057109.1 MGP_CASTEiJ_G0025572.1 mouse_genomes_project 2 123357737 123361675 - Catsper2 protein_coding retained_intron MGP_CASTEiJ_T0057110.1 MGP_CASTEiJ_G0025572.1 mouse_genomes_project 2 123376923 123378984 - Catsper2 protein_coding retained_intron MGP_CASTEiJ_T0006993.1 MGP_CASTEiJ_G0005750.1 mouse_genomes_project 2 32166265 32258361 - C230014O12Rik lincRNA lincRNA MGP_CASTEiJ_T0006995.1 MGP_CASTEiJ_G0005750.1 mouse_genomes_project 2 32250776 32258367 - C230014O12Rik lincRNA lincRNA MGP_CASTEiJ_T0010143.1 MGP_CASTEiJ_G0008331.1 mouse_genomes_project 2 77028680 77028762 - Gm44360 miRNA miRNA MGP_CASTEiJ_T0016982.1 MGP_CASTEiJ_G0014706.1 mouse_genomes_project 2 7585720 7622499 - Gm13261 processed_transcript processed_transcript MGP_CASTEiJ_T0058829.1 MGP_CASTEiJ_G0025968.1 mouse_genomes_project 2 161922786 161954250 - MGP_CASTEiJ_P0058829 Tgm2 protein_coding protein_coding MGP_CASTEiJ_T0058830.1 MGP_CASTEiJ_G0025968.1 mouse_genomes_project 2 161924029 161954186 - MGP_CASTEiJ_P0058830 Tgm2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058831.1 MGP_CASTEiJ_G0025968.1 mouse_genomes_project 2 161933643 161954207 - MGP_CASTEiJ_P0058831 Tgm2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058832.1 MGP_CASTEiJ_G0025968.1 mouse_genomes_project 2 161936656 161954180 - Tgm2 protein_coding retained_intron MGP_CASTEiJ_T0058833.1 MGP_CASTEiJ_G0025968.1 mouse_genomes_project 2 161940601 161947660 - Tgm2 protein_coding processed_transcript MGP_CASTEiJ_T0099653.1 MGP_CASTEiJ_G0036566.1 mouse_genomes_project 2 119853005 119853163 - Gm25308 snRNA snRNA MGP_CASTEiJ_T0102212.1 MGP_CASTEiJ_G0038937.1 mouse_genomes_project 2 84561424 84562397 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0056546.1 MGP_CASTEiJ_G0025448.1 mouse_genomes_project 2 112973265 112973987 + MGP_CASTEiJ_P0056546 Olfr1289 protein_coding protein_coding MGP_CASTEiJ_T0100889.1 MGP_CASTEiJ_G0037802.1 mouse_genomes_project 2 95742203 95742334 + Gm24318 snoRNA snoRNA MGP_CASTEiJ_T0055081.1 MGP_CASTEiJ_G0025009.1 mouse_genomes_project 2 70082934 70099536 + MGP_CASTEiJ_P0055081 Gad1 protein_coding protein_coding MGP_CASTEiJ_T0055082.1 MGP_CASTEiJ_G0025009.1 mouse_genomes_project 2 70092859 70135779 + MGP_CASTEiJ_P0055082 Gad1 protein_coding protein_coding MGP_CASTEiJ_T0055083.1 MGP_CASTEiJ_G0025009.1 mouse_genomes_project 2 70092859 70119505 + MGP_CASTEiJ_P0055083 Gad1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055084.1 MGP_CASTEiJ_G0025009.1 mouse_genomes_project 2 70092980 70109426 + Gad1 protein_coding retained_intron MGP_CASTEiJ_T0055085.1 MGP_CASTEiJ_G0025009.1 mouse_genomes_project 2 70093013 70116993 + MGP_CASTEiJ_P0055085 Gad1 protein_coding protein_coding MGP_CASTEiJ_T0055086.1 MGP_CASTEiJ_G0025009.1 mouse_genomes_project 2 70093715 70117516 + MGP_CASTEiJ_P0055086 Gad1 protein_coding protein_coding MGP_CASTEiJ_T0055087.1 MGP_CASTEiJ_G0025009.1 mouse_genomes_project 2 70094258 70118343 + MGP_CASTEiJ_P0055087 Gad1 protein_coding protein_coding MGP_CASTEiJ_T0055088.1 MGP_CASTEiJ_G0025009.1 mouse_genomes_project 2 70098681 70135777 + Gad1 protein_coding processed_transcript MGP_CASTEiJ_T0017038.1 MGP_CASTEiJ_G0014740.1 mouse_genomes_project 2 71393938 71396617 + Gm13663 processed_transcript processed_transcript MGP_CASTEiJ_T0017039.1 MGP_CASTEiJ_G0014740.1 mouse_genomes_project 2 71394895 71396577 + Gm13663 processed_transcript processed_transcript MGP_CASTEiJ_T0013245.1 MGP_CASTEiJ_G0011408.1 mouse_genomes_project 2 92435641 92435946 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007088.1 MGP_CASTEiJ_G0005828.1 mouse_genomes_project 2 102969998 102982064 + Gm13905 lincRNA lincRNA MGP_CASTEiJ_T0099622.1 MGP_CASTEiJ_G0036535.1 mouse_genomes_project 2 17785438 17785545 + Gm23970 snRNA snRNA MGP_CASTEiJ_T0055716.1 MGP_CASTEiJ_G0025208.1 mouse_genomes_project 2 88246535 88247468 - MGP_CASTEiJ_P0055716 Olfr1136 protein_coding protein_coding MGP_CASTEiJ_T0053400.1 MGP_CASTEiJ_G0024719.1 mouse_genomes_project 2 26192785 26195899 + MGP_CASTEiJ_P0053400 Mrps2 protein_coding protein_coding MGP_CASTEiJ_T0053401.1 MGP_CASTEiJ_G0024719.1 mouse_genomes_project 2 26192801 26195886 + Mrps2 protein_coding processed_transcript MGP_CASTEiJ_T0053402.1 MGP_CASTEiJ_G0024719.1 mouse_genomes_project 2 26192809 26195886 + Mrps2 protein_coding processed_transcript MGP_CASTEiJ_T0003764.1 MGP_CASTEiJ_G0003376.1 mouse_genomes_project 2 1582203 1583438 - Gm13179 antisense antisense MGP_CASTEiJ_T0003765.1 MGP_CASTEiJ_G0003376.1 mouse_genomes_project 2 1582504 1583438 - Gm13179 antisense antisense MGP_CASTEiJ_T0053055.1 MGP_CASTEiJ_G0024650.1 mouse_genomes_project 2 23068460 23099825 - MGP_CASTEiJ_P0053055 Traf2 protein_coding protein_coding MGP_CASTEiJ_T0053056.1 MGP_CASTEiJ_G0024650.1 mouse_genomes_project 2 23069359 23092053 - Traf2 protein_coding retained_intron MGP_CASTEiJ_T0053057.1 MGP_CASTEiJ_G0024650.1 mouse_genomes_project 2 23069359 23099795 - MGP_CASTEiJ_P0053057 Traf2 protein_coding protein_coding MGP_CASTEiJ_T0059065.1 MGP_CASTEiJ_G0026030.1 mouse_genomes_project 2 168607637 168636817 + MGP_CASTEiJ_P0059065 Gm20458 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056125.1 MGP_CASTEiJ_G0025351.1 mouse_genomes_project 2 93349689 93356230 + Pex16 protein_coding processed_transcript MGP_CASTEiJ_T0056126.1 MGP_CASTEiJ_G0025351.1 mouse_genomes_project 2 93350319 93356231 + MGP_CASTEiJ_P0056126 Pex16 protein_coding protein_coding MGP_CASTEiJ_T0056127.1 MGP_CASTEiJ_G0025351.1 mouse_genomes_project 2 93350506 93354335 + Pex16 protein_coding processed_transcript MGP_CASTEiJ_T0056128.1 MGP_CASTEiJ_G0025351.1 mouse_genomes_project 2 93350572 93351717 + Pex16 protein_coding processed_transcript MGP_CASTEiJ_T0013315.1 MGP_CASTEiJ_G0011478.1 mouse_genomes_project 2 120822051 120822320 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055759.1 MGP_CASTEiJ_G0025248.1 mouse_genomes_project 2 89444054 89533132 - MGP_CASTEiJ_P0055759 protein_coding protein_coding MGP_CASTEiJ_T0006958.1 MGP_CASTEiJ_G0005725.1 mouse_genomes_project 2 9963873 9973415 + Gm37565 lincRNA lincRNA MGP_CASTEiJ_T0100887.1 MGP_CASTEiJ_G0037800.1 mouse_genomes_project 2 85762436 85762580 + Gm23716 snoRNA snoRNA MGP_CASTEiJ_T0010118.1 MGP_CASTEiJ_G0008306.1 mouse_genomes_project 2 30340368 30340447 + Gm23363 miRNA miRNA MGP_CASTEiJ_T0017087.1 MGP_CASTEiJ_G0014770.1 mouse_genomes_project 2 115587338 115601755 + A530058N18Rik processed_transcript antisense MGP_CASTEiJ_T0017088.1 MGP_CASTEiJ_G0014770.1 mouse_genomes_project 2 115587446 115606015 + A530058N18Rik processed_transcript antisense MGP_CASTEiJ_T0017089.1 MGP_CASTEiJ_G0014770.1 mouse_genomes_project 2 115587447 115605306 + A530058N18Rik processed_transcript antisense MGP_CASTEiJ_T0017090.1 MGP_CASTEiJ_G0014770.1 mouse_genomes_project 2 115587449 115605828 + A530058N18Rik processed_transcript antisense MGP_CASTEiJ_T0017091.1 MGP_CASTEiJ_G0014770.1 mouse_genomes_project 2 115587462 115594388 + A530058N18Rik processed_transcript retained_intron MGP_CASTEiJ_T0017092.1 MGP_CASTEiJ_G0014770.1 mouse_genomes_project 2 115587480 115591253 + A530058N18Rik processed_transcript antisense MGP_CASTEiJ_T0017093.1 MGP_CASTEiJ_G0014770.1 mouse_genomes_project 2 115587481 115605174 + A530058N18Rik processed_transcript antisense MGP_CASTEiJ_T0007147.1 MGP_CASTEiJ_G0005874.1 mouse_genomes_project 2 136061303 136084207 + A430048G15Rik lincRNA lincRNA MGP_CASTEiJ_T0013347.1 MGP_CASTEiJ_G0011510.1 mouse_genomes_project 2 134407179 134408607 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053661.1 MGP_CASTEiJ_G0024762.1 mouse_genomes_project 2 28189767 28204170 - MGP_CASTEiJ_P0053661 Sh3glb2 protein_coding protein_coding MGP_CASTEiJ_T0053662.1 MGP_CASTEiJ_G0024762.1 mouse_genomes_project 2 28189767 28204246 - MGP_CASTEiJ_P0053662 Sh3glb2 protein_coding protein_coding MGP_CASTEiJ_T0053663.1 MGP_CASTEiJ_G0024762.1 mouse_genomes_project 2 28189769 28204219 - MGP_CASTEiJ_P0053663 Sh3glb2 protein_coding protein_coding MGP_CASTEiJ_T0053664.1 MGP_CASTEiJ_G0024762.1 mouse_genomes_project 2 28189769 28204195 - MGP_CASTEiJ_P0053664 Sh3glb2 protein_coding protein_coding MGP_CASTEiJ_T0053665.1 MGP_CASTEiJ_G0024762.1 mouse_genomes_project 2 28189769 28204262 - MGP_CASTEiJ_P0053665 Sh3glb2 protein_coding protein_coding MGP_CASTEiJ_T0053666.1 MGP_CASTEiJ_G0024762.1 mouse_genomes_project 2 28190093 28204235 - Sh3glb2 protein_coding retained_intron MGP_CASTEiJ_T0053667.1 MGP_CASTEiJ_G0024762.1 mouse_genomes_project 2 28190099 28191060 - Sh3glb2 protein_coding processed_transcript MGP_CASTEiJ_T0053668.1 MGP_CASTEiJ_G0024762.1 mouse_genomes_project 2 28190778 28204267 - Sh3glb2 protein_coding processed_transcript MGP_CASTEiJ_T0053669.1 MGP_CASTEiJ_G0024762.1 mouse_genomes_project 2 28190844 28192615 - Sh3glb2 protein_coding retained_intron MGP_CASTEiJ_T0053670.1 MGP_CASTEiJ_G0024762.1 mouse_genomes_project 2 28191066 28192546 - Sh3glb2 protein_coding retained_intron MGP_CASTEiJ_T0053671.1 MGP_CASTEiJ_G0024762.1 mouse_genomes_project 2 28193028 28200258 - Sh3glb2 protein_coding retained_intron MGP_CASTEiJ_T0053672.1 MGP_CASTEiJ_G0024762.1 mouse_genomes_project 2 28193050 28199773 - Sh3glb2 protein_coding retained_intron MGP_CASTEiJ_T0053673.1 MGP_CASTEiJ_G0024762.1 mouse_genomes_project 2 28194443 28204175 - Sh3glb2 protein_coding processed_transcript MGP_CASTEiJ_T0053674.1 MGP_CASTEiJ_G0024762.1 mouse_genomes_project 2 28194700 28204190 - Sh3glb2 protein_coding retained_intron MGP_CASTEiJ_T0057255.1 MGP_CASTEiJ_G0025605.1 mouse_genomes_project 2 127331394 127341402 + MGP_CASTEiJ_P0057255 Ctxn2 protein_coding protein_coding MGP_CASTEiJ_T0006977.1 MGP_CASTEiJ_G0005738.1 mouse_genomes_project 2 23789611 23794553 - Gm13553 lincRNA lincRNA MGP_CASTEiJ_T0054458.1 MGP_CASTEiJ_G0024903.1 mouse_genomes_project 2 37308551 37317248 + MGP_CASTEiJ_P0054458 Wdr38 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054459.1 MGP_CASTEiJ_G0024903.1 mouse_genomes_project 2 37309394 37312659 + MGP_CASTEiJ_P0054459 Wdr38 protein_coding protein_coding MGP_CASTEiJ_T0054460.1 MGP_CASTEiJ_G0024903.1 mouse_genomes_project 2 37309407 37311347 + Wdr38 protein_coding processed_transcript MGP_CASTEiJ_T0003947.1 MGP_CASTEiJ_G0003510.1 mouse_genomes_project 2 127481375 127486536 + antisense antisense MGP_CASTEiJ_T0055044.1 MGP_CASTEiJ_G0025001.1 mouse_genomes_project 2 69253378 69259385 + MGP_CASTEiJ_P0055044 Phospho2 protein_coding protein_coding MGP_CASTEiJ_T0055045.1 MGP_CASTEiJ_G0025001.1 mouse_genomes_project 2 69253391 69260956 + MGP_CASTEiJ_P0055045 Phospho2 protein_coding protein_coding MGP_CASTEiJ_T0055046.1 MGP_CASTEiJ_G0025001.1 mouse_genomes_project 2 69253405 69260956 + MGP_CASTEiJ_P0055046 Phospho2 protein_coding protein_coding MGP_CASTEiJ_T0055047.1 MGP_CASTEiJ_G0025001.1 mouse_genomes_project 2 69253415 69256192 + Phospho2 protein_coding processed_transcript MGP_CASTEiJ_T0055048.1 MGP_CASTEiJ_G0025001.1 mouse_genomes_project 2 69254726 69260955 + MGP_CASTEiJ_P0055048 Phospho2 protein_coding protein_coding MGP_CASTEiJ_T0098859.1 MGP_CASTEiJ_G0035784.1 mouse_genomes_project 2 1082357 1085425 + Gm38085 sense_intronic sense_intronic MGP_CASTEiJ_T0055025.1 MGP_CASTEiJ_G0024997.1 mouse_genomes_project 2 69116773 69131558 + MGP_CASTEiJ_P0055025 Klhl41 protein_coding protein_coding MGP_CASTEiJ_T0055161.1 MGP_CASTEiJ_G0025022.1 mouse_genomes_project 2 71392054 71470130 + Itga6 protein_coding processed_transcript MGP_CASTEiJ_T0055162.1 MGP_CASTEiJ_G0025022.1 mouse_genomes_project 2 71436892 71470819 + Itga6 protein_coding processed_transcript MGP_CASTEiJ_T0055163.1 MGP_CASTEiJ_G0025022.1 mouse_genomes_project 2 71436903 71506373 + MGP_CASTEiJ_P0055163 Itga6 protein_coding protein_coding MGP_CASTEiJ_T0055164.1 MGP_CASTEiJ_G0025022.1 mouse_genomes_project 2 71437102 71508851 + MGP_CASTEiJ_P0055164 Itga6 protein_coding protein_coding MGP_CASTEiJ_T0055165.1 MGP_CASTEiJ_G0025022.1 mouse_genomes_project 2 71487947 71488783 + Itga6 protein_coding processed_transcript MGP_CASTEiJ_T0055166.1 MGP_CASTEiJ_G0025022.1 mouse_genomes_project 2 71498971 71508007 + Itga6 protein_coding processed_transcript MGP_CASTEiJ_T0054493.1 MGP_CASTEiJ_G0024910.1 mouse_genomes_project 2 38890563 38899089 + MGP_CASTEiJ_P0054493 protein_coding protein_coding MGP_CASTEiJ_T0054494.1 MGP_CASTEiJ_G0024910.1 mouse_genomes_project 2 38891507 38899086 + MGP_CASTEiJ_P0054494 protein_coding protein_coding MGP_CASTEiJ_T0007206.1 MGP_CASTEiJ_G0005925.1 mouse_genomes_project 2 170561676 170585020 + Gm11468 lincRNA lincRNA MGP_CASTEiJ_T0001003.1 MGP_CASTEiJ_G0000939.1 mouse_genomes_project 2 11465381 11468883 + TEC TEC MGP_CASTEiJ_T0058888.1 MGP_CASTEiJ_G0025981.1 mouse_genomes_project 2 164225867 164228084 - MGP_CASTEiJ_P0058888 Gm826 protein_coding protein_coding MGP_CASTEiJ_T0058889.1 MGP_CASTEiJ_G0025981.1 mouse_genomes_project 2 164226218 164250232 - Gm826 protein_coding processed_transcript MGP_CASTEiJ_T0058890.1 MGP_CASTEiJ_G0025981.1 mouse_genomes_project 2 164226335 164243566 - MGP_CASTEiJ_P0058890 Gm826 protein_coding protein_coding MGP_CASTEiJ_T0054508.1 MGP_CASTEiJ_G0024912.1 mouse_genomes_project 2 42029243 42174760 + MGP_CASTEiJ_P0054508 Kynu protein_coding unknown_likely_coding MGP_CASTEiJ_T0054509.1 MGP_CASTEiJ_G0024912.1 mouse_genomes_project 2 42029329 42038002 + Kynu protein_coding processed_transcript MGP_CASTEiJ_T0054510.1 MGP_CASTEiJ_G0024912.1 mouse_genomes_project 2 42029329 42176525 + MGP_CASTEiJ_P0054510 Kynu protein_coding protein_coding MGP_CASTEiJ_T0054511.1 MGP_CASTEiJ_G0024912.1 mouse_genomes_project 2 42029342 42173531 + MGP_CASTEiJ_P0054511 Kynu protein_coding protein_coding MGP_CASTEiJ_T0054512.1 MGP_CASTEiJ_G0024912.1 mouse_genomes_project 2 42029354 42125669 + MGP_CASTEiJ_P0054512 Kynu protein_coding protein_coding MGP_CASTEiJ_T0054513.1 MGP_CASTEiJ_G0024912.1 mouse_genomes_project 2 42080804 42087404 + Kynu protein_coding processed_transcript MGP_CASTEiJ_T0054514.1 MGP_CASTEiJ_G0024912.1 mouse_genomes_project 2 42160803 42174712 + Kynu protein_coding processed_transcript MGP_CASTEiJ_T0058010.1 MGP_CASTEiJ_G0025777.1 mouse_genomes_project 2 149046026 149076802 + MGP_CASTEiJ_P0058010 protein_coding protein_coding MGP_CASTEiJ_T0058011.1 MGP_CASTEiJ_G0025777.1 mouse_genomes_project 2 149046026 149148528 + MGP_CASTEiJ_P0058011 protein_coding protein_coding MGP_CASTEiJ_T0058012.1 MGP_CASTEiJ_G0025777.1 mouse_genomes_project 2 149046047 149078766 + MGP_CASTEiJ_P0058012 protein_coding protein_coding MGP_CASTEiJ_T0058013.1 MGP_CASTEiJ_G0025777.1 mouse_genomes_project 2 149046047 149076017 + MGP_CASTEiJ_P0058013 protein_coding protein_coding MGP_CASTEiJ_T0058014.1 MGP_CASTEiJ_G0025777.1 mouse_genomes_project 2 149046050 149075872 + MGP_CASTEiJ_P0058014 protein_coding protein_coding MGP_CASTEiJ_T0058015.1 MGP_CASTEiJ_G0025777.1 mouse_genomes_project 2 149046056 149316988 + MGP_CASTEiJ_P0058015 protein_coding protein_coding MGP_CASTEiJ_T0058016.1 MGP_CASTEiJ_G0025777.1 mouse_genomes_project 2 149046058 149066417 + MGP_CASTEiJ_P0058016 protein_coding protein_coding MGP_CASTEiJ_T0058017.1 MGP_CASTEiJ_G0025777.1 mouse_genomes_project 2 149060322 149284033 + MGP_CASTEiJ_P0058017 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058018.1 MGP_CASTEiJ_G0025777.1 mouse_genomes_project 2 149146953 149203489 + protein_coding processed_transcript MGP_CASTEiJ_T0058019.1 MGP_CASTEiJ_G0025777.1 mouse_genomes_project 2 149150771 149238292 + protein_coding retained_intron MGP_CASTEiJ_T0058020.1 MGP_CASTEiJ_G0025777.1 mouse_genomes_project 2 149150903 149238423 + MGP_CASTEiJ_P0058020 protein_coding protein_coding MGP_CASTEiJ_T0058021.1 MGP_CASTEiJ_G0025777.1 mouse_genomes_project 2 149154070 149316984 + protein_coding processed_transcript MGP_CASTEiJ_T0058022.1 MGP_CASTEiJ_G0025777.1 mouse_genomes_project 2 149257788 149316907 + protein_coding processed_transcript MGP_CASTEiJ_T0058023.1 MGP_CASTEiJ_G0025777.1 mouse_genomes_project 2 149316211 149316984 + protein_coding processed_transcript MGP_CASTEiJ_T0058024.1 MGP_CASTEiJ_G0025777.1 mouse_genomes_project 2 149316559 149316742 + MGP_CASTEiJ_P0058024 protein_coding protein_coding MGP_CASTEiJ_T0055669.1 MGP_CASTEiJ_G0025170.1 mouse_genomes_project 2 87241032 87241974 - MGP_CASTEiJ_P0055669 Olfr1090 protein_coding protein_coding MGP_CASTEiJ_T0058253.1 MGP_CASTEiJ_G0025855.1 mouse_genomes_project 2 156069638 156070797 + MGP_CASTEiJ_P0058253 Id1 protein_coding protein_coding MGP_CASTEiJ_T0058254.1 MGP_CASTEiJ_G0025855.1 mouse_genomes_project 2 156069638 156070797 + MGP_CASTEiJ_P0058254 Id1 protein_coding protein_coding MGP_CASTEiJ_T0055653.1 MGP_CASTEiJ_G0025155.1 mouse_genomes_project 2 86734967 86735906 + MGP_CASTEiJ_P0055653 Olfr1052 protein_coding protein_coding MGP_CASTEiJ_T0059186.1 MGP_CASTEiJ_G0026062.1 mouse_genomes_project 2 169244717 169254105 + MGP_CASTEiJ_P0059186 Cd40 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059187.1 MGP_CASTEiJ_G0026062.1 mouse_genomes_project 2 169244717 169265734 + MGP_CASTEiJ_P0059187 Cd40 protein_coding protein_coding MGP_CASTEiJ_T0059188.1 MGP_CASTEiJ_G0026062.1 mouse_genomes_project 2 169244726 169264438 + MGP_CASTEiJ_P0059188 Cd40 protein_coding protein_coding MGP_CASTEiJ_T0059189.1 MGP_CASTEiJ_G0026062.1 mouse_genomes_project 2 169244770 169263529 + MGP_CASTEiJ_P0059189 Cd40 protein_coding protein_coding MGP_CASTEiJ_T0059190.1 MGP_CASTEiJ_G0026062.1 mouse_genomes_project 2 169244771 169254162 + MGP_CASTEiJ_P0059190 Cd40 protein_coding protein_coding MGP_CASTEiJ_T0059191.1 MGP_CASTEiJ_G0026062.1 mouse_genomes_project 2 169244794 169263784 + MGP_CASTEiJ_P0059191 Cd40 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059192.1 MGP_CASTEiJ_G0026062.1 mouse_genomes_project 2 169254057 169258089 + Cd40 protein_coding retained_intron MGP_CASTEiJ_T0055752.1 MGP_CASTEiJ_G0025242.1 mouse_genomes_project 2 89239703 89240615 + MGP_CASTEiJ_P0055752 Olfr1186 protein_coding protein_coding MGP_CASTEiJ_T0055553.1 MGP_CASTEiJ_G0025099.1 mouse_genomes_project 2 85008909 85013514 + MGP_CASTEiJ_P0055553 Ypel4 protein_coding protein_coding MGP_CASTEiJ_T0055554.1 MGP_CASTEiJ_G0025099.1 mouse_genomes_project 2 85008949 85013514 + MGP_CASTEiJ_P0055554 Ypel4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055555.1 MGP_CASTEiJ_G0025099.1 mouse_genomes_project 2 85008974 85010478 + Ypel4 protein_coding processed_transcript MGP_CASTEiJ_T0055556.1 MGP_CASTEiJ_G0025099.1 mouse_genomes_project 2 85009078 85013508 + Ypel4 protein_coding retained_intron MGP_CASTEiJ_T0010056.1 MGP_CASTEiJ_G0008244.1 mouse_genomes_project 2 7720650 7720767 + Mir669e miRNA miRNA MGP_CASTEiJ_T0001009.1 MGP_CASTEiJ_G0000945.1 mouse_genomes_project 2 12334749 12336083 + TEC TEC MGP_CASTEiJ_T0058146.1 MGP_CASTEiJ_G0025817.1 mouse_genomes_project 2 154311872 154312791 - protein_coding processed_transcript MGP_CASTEiJ_T0058082.1 MGP_CASTEiJ_G0025798.1 mouse_genomes_project 2 152100172 152103763 + MGP_CASTEiJ_P0058082 Cst9 protein_coding protein_coding MGP_CASTEiJ_T0102208.1 MGP_CASTEiJ_G0038933.1 mouse_genomes_project 2 35197565 35198509 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0059060.1 MGP_CASTEiJ_G0026028.1 mouse_genomes_project 2 168569524 168588670 - MGP_CASTEiJ_P0059060 Sdc4 protein_coding protein_coding MGP_CASTEiJ_T0059061.1 MGP_CASTEiJ_G0026028.1 mouse_genomes_project 2 168571167 168589371 - Sdc4 protein_coding processed_transcript MGP_CASTEiJ_T0007107.1 MGP_CASTEiJ_G0005844.1 mouse_genomes_project 2 116511661 116840110 - lincRNA lincRNA MGP_CASTEiJ_T0055725.1 MGP_CASTEiJ_G0025216.1 mouse_genomes_project 2 88373486 88374431 + MGP_CASTEiJ_P0055725 Olfr1148 protein_coding protein_coding MGP_CASTEiJ_T0001027.1 MGP_CASTEiJ_G0000963.1 mouse_genomes_project 2 36339773 36342635 - TEC TEC MGP_CASTEiJ_T0053221.1 MGP_CASTEiJ_G0024686.1 mouse_genomes_project 2 24021948 24062035 - MGP_CASTEiJ_P0053221 Sec16a protein_coding protein_coding MGP_CASTEiJ_T0053222.1 MGP_CASTEiJ_G0024686.1 mouse_genomes_project 2 24021948 24045982 - MGP_CASTEiJ_P0053222 Sec16a protein_coding protein_coding MGP_CASTEiJ_T0053223.1 MGP_CASTEiJ_G0024686.1 mouse_genomes_project 2 24021950 24062037 - MGP_CASTEiJ_P0053223 Sec16a protein_coding protein_coding MGP_CASTEiJ_T0053224.1 MGP_CASTEiJ_G0024686.1 mouse_genomes_project 2 24022805 24025569 - Sec16a protein_coding processed_transcript MGP_CASTEiJ_T0053225.1 MGP_CASTEiJ_G0024686.1 mouse_genomes_project 2 24023235 24028745 - Sec16a protein_coding processed_transcript MGP_CASTEiJ_T0053226.1 MGP_CASTEiJ_G0024686.1 mouse_genomes_project 2 24026893 24034564 - Sec16a protein_coding processed_transcript MGP_CASTEiJ_T0053227.1 MGP_CASTEiJ_G0024686.1 mouse_genomes_project 2 24052452 24056575 - MGP_CASTEiJ_P0053227 Sec16a protein_coding protein_coding MGP_CASTEiJ_T0053228.1 MGP_CASTEiJ_G0024686.1 mouse_genomes_project 2 24058783 24062021 - Sec16a protein_coding processed_transcript MGP_CASTEiJ_T0055756.1 MGP_CASTEiJ_G0025245.1 mouse_genomes_project 2 89314167 89315088 + MGP_CASTEiJ_P0055756 Olfr1189 protein_coding protein_coding MGP_CASTEiJ_T0013138.1 MGP_CASTEiJ_G0011301.1 mouse_genomes_project 2 53255679 53256230 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007231.1 MGP_CASTEiJ_G0005945.1 mouse_genomes_project 2 174083446 174110018 + Gm14249 lincRNA lincRNA MGP_CASTEiJ_T0010138.1 MGP_CASTEiJ_G0008326.1 mouse_genomes_project 2 74540343 74540480 - Gm44463 miRNA miRNA MGP_CASTEiJ_T0004031.1 MGP_CASTEiJ_G0003573.1 mouse_genomes_project 2 168301303 168328004 + A730032A03Rik antisense antisense MGP_CASTEiJ_T0004032.1 MGP_CASTEiJ_G0003573.1 mouse_genomes_project 2 168319072 168328004 + A730032A03Rik antisense antisense MGP_CASTEiJ_T0058753.1 MGP_CASTEiJ_G0025954.1 mouse_genomes_project 2 160816045 160825783 + MGP_CASTEiJ_P0058753 Tldc2 protein_coding protein_coding MGP_CASTEiJ_T0058754.1 MGP_CASTEiJ_G0025954.1 mouse_genomes_project 2 160817444 160825784 + MGP_CASTEiJ_P0058754 Tldc2 protein_coding protein_coding MGP_CASTEiJ_T0054457.1 MGP_CASTEiJ_G0024902.1 mouse_genomes_project 2 37226201 37269706 + MGP_CASTEiJ_P0054457 Olfml2a protein_coding protein_coding MGP_CASTEiJ_T0053883.1 MGP_CASTEiJ_G0024792.1 mouse_genomes_project 2 30045123 30082047 - MGP_CASTEiJ_P0053883 Fam78a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053886.1 MGP_CASTEiJ_G0024792.1 mouse_genomes_project 2 30064335 30081160 - MGP_CASTEiJ_P0053886 Fam78a protein_coding protein_coding MGP_CASTEiJ_T0053887.1 MGP_CASTEiJ_G0024792.1 mouse_genomes_project 2 30066294 30082041 - MGP_CASTEiJ_P0053887 Fam78a protein_coding unknown_likely_coding MGP_CASTEiJ_T0053888.1 MGP_CASTEiJ_G0024792.1 mouse_genomes_project 2 30066889 30076574 - Fam78a protein_coding processed_transcript MGP_CASTEiJ_T0053889.1 MGP_CASTEiJ_G0024792.1 mouse_genomes_project 2 30080648 30082263 - Fam78a protein_coding processed_transcript MGP_CASTEiJ_T0099641.1 MGP_CASTEiJ_G0036554.1 mouse_genomes_project 2 75574338 75574437 - Gm24996 snRNA snRNA MGP_CASTEiJ_T0007242.1 MGP_CASTEiJ_G0005954.1 mouse_genomes_project 2 176838618 176848494 - Gm14641 lincRNA lincRNA MGP_CASTEiJ_T0054807.1 MGP_CASTEiJ_G0024959.1 mouse_genomes_project 2 59612845 59691479 - MGP_CASTEiJ_P0054807 Itgb6 protein_coding protein_coding MGP_CASTEiJ_T0054808.1 MGP_CASTEiJ_G0024959.1 mouse_genomes_project 2 59614808 59741354 - MGP_CASTEiJ_P0054808 Itgb6 protein_coding protein_coding MGP_CASTEiJ_T0054809.1 MGP_CASTEiJ_G0024959.1 mouse_genomes_project 2 59618806 59741354 - MGP_CASTEiJ_P0054809 Itgb6 protein_coding protein_coding MGP_CASTEiJ_T0054810.1 MGP_CASTEiJ_G0024959.1 mouse_genomes_project 2 59619700 59691494 - MGP_CASTEiJ_P0054810 Itgb6 protein_coding protein_coding MGP_CASTEiJ_T0054811.1 MGP_CASTEiJ_G0024959.1 mouse_genomes_project 2 59650632 59691461 - Itgb6 protein_coding processed_transcript MGP_CASTEiJ_T0054812.1 MGP_CASTEiJ_G0024959.1 mouse_genomes_project 2 59669275 59691522 - Itgb6 protein_coding processed_transcript MGP_CASTEiJ_T0054813.1 MGP_CASTEiJ_G0024959.1 mouse_genomes_project 2 59686996 59691471 - Itgb6 protein_coding processed_transcript MGP_CASTEiJ_T0054814.1 MGP_CASTEiJ_G0024959.1 mouse_genomes_project 2 59692407 59724307 - Itgb6 protein_coding processed_transcript MGP_CASTEiJ_T0054815.1 MGP_CASTEiJ_G0024959.1 mouse_genomes_project 2 59712164 59724284 - Itgb6 protein_coding processed_transcript MGP_CASTEiJ_T0057803.1 MGP_CASTEiJ_G0025732.1 mouse_genomes_project 2 137179689 137232014 - MGP_CASTEiJ_P0057803 Hao1 protein_coding protein_coding MGP_CASTEiJ_T0057804.1 MGP_CASTEiJ_G0025732.1 mouse_genomes_project 2 137208363 137231953 - Hao1 protein_coding processed_transcript MGP_CASTEiJ_T0055586.1 MGP_CASTEiJ_G0025110.1 mouse_genomes_project 2 85297374 85336231 - MGP_CASTEiJ_P0055586 P2rx3 protein_coding protein_coding MGP_CASTEiJ_T0055587.1 MGP_CASTEiJ_G0025110.1 mouse_genomes_project 2 85297425 85338206 - MGP_CASTEiJ_P0055587 P2rx3 protein_coding protein_coding MGP_CASTEiJ_T0055588.1 MGP_CASTEiJ_G0025110.1 mouse_genomes_project 2 85297623 85336066 - MGP_CASTEiJ_P0055588 P2rx3 protein_coding protein_coding MGP_CASTEiJ_T0055589.1 MGP_CASTEiJ_G0025110.1 mouse_genomes_project 2 85323713 85334055 - P2rx3 protein_coding processed_transcript MGP_CASTEiJ_T0055590.1 MGP_CASTEiJ_G0025110.1 mouse_genomes_project 2 85332797 85333939 - P2rx3 protein_coding processed_transcript MGP_CASTEiJ_T0054251.1 MGP_CASTEiJ_G0024844.1 mouse_genomes_project 2 33292857 33308912 - MGP_CASTEiJ_P0054251 AI182371 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054252.1 MGP_CASTEiJ_G0024844.1 mouse_genomes_project 2 33295452 33308944 - MGP_CASTEiJ_P0054252 AI182371 protein_coding protein_coding MGP_CASTEiJ_T0054253.1 MGP_CASTEiJ_G0024844.1 mouse_genomes_project 2 33297385 33308943 - MGP_CASTEiJ_P0054253 AI182371 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054254.1 MGP_CASTEiJ_G0024844.1 mouse_genomes_project 2 33297726 33304182 - AI182371 protein_coding processed_transcript MGP_CASTEiJ_T0054255.1 MGP_CASTEiJ_G0024844.1 mouse_genomes_project 2 33300501 33309801 - AI182371 protein_coding processed_transcript MGP_CASTEiJ_T0057529.1 MGP_CASTEiJ_G0025674.1 mouse_genomes_project 2 132514409 132564298 + Tgm6 protein_coding processed_transcript MGP_CASTEiJ_T0057530.1 MGP_CASTEiJ_G0025674.1 mouse_genomes_project 2 132524939 132564298 + Tgm6 protein_coding processed_transcript MGP_CASTEiJ_T0057531.1 MGP_CASTEiJ_G0025674.1 mouse_genomes_project 2 132524939 132564298 + MGP_CASTEiJ_P0057531 Tgm6 protein_coding protein_coding MGP_CASTEiJ_T0013409.1 MGP_CASTEiJ_G0011572.1 mouse_genomes_project 2 159045058 159045373 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056789.1 MGP_CASTEiJ_G0025522.1 mouse_genomes_project 2 121122771 121129524 + Vps18 protein_coding retained_intron MGP_CASTEiJ_T0056790.1 MGP_CASTEiJ_G0025522.1 mouse_genomes_project 2 121122773 121133704 + MGP_CASTEiJ_P0056790 Vps18 protein_coding protein_coding MGP_CASTEiJ_T0056791.1 MGP_CASTEiJ_G0025522.1 mouse_genomes_project 2 121122818 121133577 + Vps18 protein_coding processed_transcript MGP_CASTEiJ_T0054289.1 MGP_CASTEiJ_G0024849.1 mouse_genomes_project 2 33581082 33594728 - MGP_CASTEiJ_P0054289 4930568D16Rik protein_coding protein_coding MGP_CASTEiJ_T0007135.1 MGP_CASTEiJ_G0005865.1 mouse_genomes_project 2 128761858 128795444 - Gm26697 lincRNA lincRNA MGP_CASTEiJ_T0057802.1 MGP_CASTEiJ_G0025731.1 mouse_genomes_project 2 136187859 136197803 + MGP_CASTEiJ_P0057802 Bmp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055670.1 MGP_CASTEiJ_G0025171.1 mouse_genomes_project 2 87271092 87272061 + MGP_CASTEiJ_P0055670 Olfr1093 protein_coding protein_coding MGP_CASTEiJ_T0055647.1 MGP_CASTEiJ_G0025149.1 mouse_genomes_project 2 86627474 86628434 - MGP_CASTEiJ_P0055647 Olfr52 protein_coding protein_coding MGP_CASTEiJ_T0059752.1 MGP_CASTEiJ_G0026186.1 mouse_genomes_project 2 184004627 184013990 - MGP_CASTEiJ_P0059752 Eef1a2 protein_coding protein_coding MGP_CASTEiJ_T0101575.1 MGP_CASTEiJ_G0038448.1 mouse_genomes_project 2 134406134 134406374 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0052507.1 MGP_CASTEiJ_G0024556.1 mouse_genomes_project 2 11410190 11465196 + MGP_CASTEiJ_P0052507 Stam protein_coding protein_coding MGP_CASTEiJ_T0052508.1 MGP_CASTEiJ_G0024556.1 mouse_genomes_project 2 11410200 11444040 + Stam protein_coding processed_transcript MGP_CASTEiJ_T0052509.1 MGP_CASTEiJ_G0024556.1 mouse_genomes_project 2 11410281 11459888 + MGP_CASTEiJ_P0052509 Stam protein_coding protein_coding MGP_CASTEiJ_T0052510.1 MGP_CASTEiJ_G0024556.1 mouse_genomes_project 2 11410314 11463103 + MGP_CASTEiJ_P0052510 Stam protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052511.1 MGP_CASTEiJ_G0024556.1 mouse_genomes_project 2 11410519 11444508 + MGP_CASTEiJ_P0052511 Stam protein_coding protein_coding MGP_CASTEiJ_T0052512.1 MGP_CASTEiJ_G0024556.1 mouse_genomes_project 2 11443763 11444603 + Stam protein_coding retained_intron MGP_CASTEiJ_T0052513.1 MGP_CASTEiJ_G0024556.1 mouse_genomes_project 2 11444481 11446825 + Stam protein_coding processed_transcript MGP_CASTEiJ_T0052514.1 MGP_CASTEiJ_G0024556.1 mouse_genomes_project 2 11446278 11454652 + Stam protein_coding retained_intron MGP_CASTEiJ_T0052515.1 MGP_CASTEiJ_G0024556.1 mouse_genomes_project 2 11449556 11454594 + Stam protein_coding retained_intron MGP_CASTEiJ_T0003821.1 MGP_CASTEiJ_G0003421.1 mouse_genomes_project 2 29876685 29882169 - Gm13441 antisense antisense MGP_CASTEiJ_T0010105.1 MGP_CASTEiJ_G0008293.1 mouse_genomes_project 2 24213901 24213959 - Mir126b miRNA miRNA MGP_CASTEiJ_T0013250.1 MGP_CASTEiJ_G0011413.1 mouse_genomes_project 2 93553292 93553704 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058786.1 MGP_CASTEiJ_G0025960.1 mouse_genomes_project 2 161117474 161150125 + MGP_CASTEiJ_P0058786 Manbal protein_coding protein_coding MGP_CASTEiJ_T0056562.1 MGP_CASTEiJ_G0025464.1 mouse_genomes_project 2 113546502 113547438 - MGP_CASTEiJ_P0056562 Olfr1313 protein_coding protein_coding MGP_CASTEiJ_T0053740.1 MGP_CASTEiJ_G0024770.1 mouse_genomes_project 2 28706175 28724688 + MGP_CASTEiJ_P0053740 Ntmt1 protein_coding protein_coding MGP_CASTEiJ_T0053741.1 MGP_CASTEiJ_G0024770.1 mouse_genomes_project 2 28706290 28724672 + MGP_CASTEiJ_P0053741 Ntmt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053742.1 MGP_CASTEiJ_G0024770.1 mouse_genomes_project 2 28706291 28724042 + MGP_CASTEiJ_P0053742 Ntmt1 protein_coding protein_coding MGP_CASTEiJ_T0053743.1 MGP_CASTEiJ_G0024770.1 mouse_genomes_project 2 28706306 28715917 + Ntmt1 protein_coding processed_transcript MGP_CASTEiJ_T0053744.1 MGP_CASTEiJ_G0024770.1 mouse_genomes_project 2 28706343 28716381 + Ntmt1 protein_coding processed_transcript MGP_CASTEiJ_T0053745.1 MGP_CASTEiJ_G0024770.1 mouse_genomes_project 2 28706462 28724209 + MGP_CASTEiJ_P0053745 Ntmt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053746.1 MGP_CASTEiJ_G0024770.1 mouse_genomes_project 2 28706539 28721813 + MGP_CASTEiJ_P0053746 Ntmt1 protein_coding protein_coding MGP_CASTEiJ_T0053747.1 MGP_CASTEiJ_G0024770.1 mouse_genomes_project 2 28719105 28721933 + MGP_CASTEiJ_P0053747 Ntmt1 protein_coding protein_coding MGP_CASTEiJ_T0053748.1 MGP_CASTEiJ_G0024770.1 mouse_genomes_project 2 28720971 28724216 + MGP_CASTEiJ_P0053748 Ntmt1 protein_coding protein_coding MGP_CASTEiJ_T0058376.1 MGP_CASTEiJ_G0025885.1 mouse_genomes_project 2 157642069 157650100 + MGP_CASTEiJ_P0058376 Bpifa3 protein_coding protein_coding MGP_CASTEiJ_T0058377.1 MGP_CASTEiJ_G0025885.1 mouse_genomes_project 2 157642069 157650100 + MGP_CASTEiJ_P0058377 Bpifa3 protein_coding protein_coding MGP_CASTEiJ_T0058378.1 MGP_CASTEiJ_G0025885.1 mouse_genomes_project 2 157647209 157649363 + MGP_CASTEiJ_P0058378 Bpifa3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013361.1 MGP_CASTEiJ_G0011524.1 mouse_genomes_project 2 142720307 142720735 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054374.1 MGP_CASTEiJ_G0024884.1 mouse_genomes_project 2 35364237 35368450 + MGP_CASTEiJ_P0054374 protein_coding protein_coding MGP_CASTEiJ_T0057911.1 MGP_CASTEiJ_G0025754.1 mouse_genomes_project 2 146073404 146083466 + MGP_CASTEiJ_P0057911 Snrpb2 protein_coding protein_coding MGP_CASTEiJ_T0057912.1 MGP_CASTEiJ_G0025754.1 mouse_genomes_project 2 146073426 146076291 + Snrpb2 protein_coding retained_intron MGP_CASTEiJ_T0057913.1 MGP_CASTEiJ_G0025754.1 mouse_genomes_project 2 146073496 146080041 + MGP_CASTEiJ_P0057913 Snrpb2 protein_coding protein_coding MGP_CASTEiJ_T0057914.1 MGP_CASTEiJ_G0025754.1 mouse_genomes_project 2 146074967 146080041 + Snrpb2 protein_coding retained_intron MGP_CASTEiJ_T0057915.1 MGP_CASTEiJ_G0025754.1 mouse_genomes_project 2 146078764 146083466 + Snrpb2 protein_coding retained_intron MGP_CASTEiJ_T0059337.1 MGP_CASTEiJ_G0026087.1 mouse_genomes_project 2 171679314 171732665 - MGP_CASTEiJ_P0059337 B4galt5 protein_coding protein_coding MGP_CASTEiJ_T0059338.1 MGP_CASTEiJ_G0026087.1 mouse_genomes_project 2 171682055 171686579 - MGP_CASTEiJ_P0059338 B4galt5 protein_coding protein_coding MGP_CASTEiJ_T0059339.1 MGP_CASTEiJ_G0026087.1 mouse_genomes_project 2 171688490 171696644 - B4galt5 protein_coding processed_transcript MGP_CASTEiJ_T0059340.1 MGP_CASTEiJ_G0026087.1 mouse_genomes_project 2 171688490 171696689 - B4galt5 protein_coding processed_transcript MGP_CASTEiJ_T0056662.1 MGP_CASTEiJ_G0025492.1 mouse_genomes_project 2 119011764 119075662 - MGP_CASTEiJ_P0056662 Rasgrp1 protein_coding protein_coding MGP_CASTEiJ_T0056663.1 MGP_CASTEiJ_G0025492.1 mouse_genomes_project 2 119011765 119075538 - MGP_CASTEiJ_P0056663 Rasgrp1 protein_coding protein_coding MGP_CASTEiJ_T0056664.1 MGP_CASTEiJ_G0025492.1 mouse_genomes_project 2 119014309 119075370 - MGP_CASTEiJ_P0056664 Rasgrp1 protein_coding protein_coding MGP_CASTEiJ_T0056665.1 MGP_CASTEiJ_G0025492.1 mouse_genomes_project 2 119014309 119075370 - MGP_CASTEiJ_P0056665 Rasgrp1 protein_coding protein_coding MGP_CASTEiJ_T0056666.1 MGP_CASTEiJ_G0025492.1 mouse_genomes_project 2 119014309 119075370 - MGP_CASTEiJ_P0056666 Rasgrp1 protein_coding protein_coding MGP_CASTEiJ_T0056667.1 MGP_CASTEiJ_G0025492.1 mouse_genomes_project 2 119014309 119075370 - MGP_CASTEiJ_P0056667 Rasgrp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056668.1 MGP_CASTEiJ_G0025492.1 mouse_genomes_project 2 119029772 119075586 - Rasgrp1 protein_coding retained_intron MGP_CASTEiJ_T0003901.1 MGP_CASTEiJ_G0003479.1 mouse_genomes_project 2 80556832 80562464 + Gm13752 antisense antisense MGP_CASTEiJ_T0052570.1 MGP_CASTEiJ_G0024568.1 mouse_genomes_project 2 15442596 15455120 - MGP_CASTEiJ_P0052570 A930004D18Rik protein_coding protein_coding MGP_CASTEiJ_T0052571.1 MGP_CASTEiJ_G0024568.1 mouse_genomes_project 2 15445304 15446139 - A930004D18Rik protein_coding processed_transcript MGP_CASTEiJ_T0052572.1 MGP_CASTEiJ_G0024568.1 mouse_genomes_project 2 15445352 15446249 - A930004D18Rik protein_coding processed_transcript MGP_CASTEiJ_T0059162.1 MGP_CASTEiJ_G0026059.1 mouse_genomes_project 2 169124521 169132645 + MGP_CASTEiJ_P0059162 Mmp9 protein_coding protein_coding MGP_CASTEiJ_T0059163.1 MGP_CASTEiJ_G0026059.1 mouse_genomes_project 2 169131969 169139621 + MGP_CASTEiJ_P0059163 Mmp9 protein_coding protein_coding MGP_CASTEiJ_T0059164.1 MGP_CASTEiJ_G0026059.1 mouse_genomes_project 2 169133036 169138903 + MGP_CASTEiJ_P0059164 Mmp9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059165.1 MGP_CASTEiJ_G0026059.1 mouse_genomes_project 2 169134448 169135015 + Mmp9 protein_coding retained_intron MGP_CASTEiJ_T0059166.1 MGP_CASTEiJ_G0026059.1 mouse_genomes_project 2 169138150 169139621 + Mmp9 protein_coding processed_transcript MGP_CASTEiJ_T0100851.1 MGP_CASTEiJ_G0037764.1 mouse_genomes_project 2 17174425 17174557 + Gm24670 snoRNA snoRNA MGP_CASTEiJ_T0098369.1 MGP_CASTEiJ_G0035300.1 mouse_genomes_project 2 20331158 20331574 - pseudogene pseudogene MGP_CASTEiJ_T0007044.1 MGP_CASTEiJ_G0005792.1 mouse_genomes_project 2 73919201 73920621 - A630050E04Rik lincRNA lincRNA MGP_CASTEiJ_T0053240.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24200911 24211923 + MGP_CASTEiJ_P0053240 Egfl7 protein_coding protein_coding MGP_CASTEiJ_T0053241.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24201913 24215224 + MGP_CASTEiJ_P0053241 Egfl7 protein_coding protein_coding MGP_CASTEiJ_T0053242.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24204715 24215221 + MGP_CASTEiJ_P0053242 Egfl7 protein_coding protein_coding MGP_CASTEiJ_T0053243.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24204731 24215222 + MGP_CASTEiJ_P0053243 Egfl7 protein_coding protein_coding MGP_CASTEiJ_T0053244.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24204756 24215660 + MGP_CASTEiJ_P0053244 Egfl7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053245.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24209165 24215221 + MGP_CASTEiJ_P0053245 Egfl7 protein_coding protein_coding MGP_CASTEiJ_T0053247.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24209196 24213447 + Egfl7 protein_coding processed_transcript MGP_CASTEiJ_T0053248.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24209207 24213478 + MGP_CASTEiJ_P0053248 Egfl7 protein_coding protein_coding MGP_CASTEiJ_T0053249.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24209224 24213028 + MGP_CASTEiJ_P0053249 Egfl7 protein_coding protein_coding MGP_CASTEiJ_T0053250.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24211084 24214983 + MGP_CASTEiJ_P0053250 Egfl7 protein_coding protein_coding MGP_CASTEiJ_T0053251.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24211873 24214102 + Egfl7 protein_coding retained_intron MGP_CASTEiJ_T0053252.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24213058 24213511 + Egfl7 protein_coding retained_intron MGP_CASTEiJ_T0053253.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24213503 24215216 + MGP_CASTEiJ_P0053253 Egfl7 protein_coding protein_coding MGP_CASTEiJ_T0053254.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24213567 24215222 + MGP_CASTEiJ_P0053254 Egfl7 protein_coding protein_coding MGP_CASTEiJ_T0053255.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24213972 24215222 + MGP_CASTEiJ_P0053255 Egfl7 protein_coding protein_coding MGP_CASTEiJ_T0053256.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24213973 24215222 + MGP_CASTEiJ_P0053256 Egfl7 protein_coding protein_coding MGP_CASTEiJ_T0053257.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24213984 24214830 + Egfl7 protein_coding retained_intron MGP_CASTEiJ_T0053258.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24214562 24215221 + Egfl7 protein_coding processed_transcript MGP_CASTEiJ_T0053259.1 MGP_CASTEiJ_G0024688.1 mouse_genomes_project 2 24214686 24215222 + Egfl7 protein_coding retained_intron MGP_CASTEiJ_T0010065.1 MGP_CASTEiJ_G0008253.1 mouse_genomes_project 2 7739487 7739614 + Gm26073 miRNA miRNA MGP_CASTEiJ_T0055893.1 MGP_CASTEiJ_G0025322.1 mouse_genomes_project 2 91756559 91762356 + MGP_CASTEiJ_P0055893 Kbtbd4 protein_coding protein_coding MGP_CASTEiJ_T0055894.1 MGP_CASTEiJ_G0025322.1 mouse_genomes_project 2 91756562 91762356 + MGP_CASTEiJ_P0055894 Kbtbd4 protein_coding protein_coding MGP_CASTEiJ_T0055895.1 MGP_CASTEiJ_G0025322.1 mouse_genomes_project 2 91756588 91757436 + Kbtbd4 protein_coding processed_transcript MGP_CASTEiJ_T0055896.1 MGP_CASTEiJ_G0025322.1 mouse_genomes_project 2 91756893 91757872 + Kbtbd4 protein_coding processed_transcript MGP_CASTEiJ_T0055897.1 MGP_CASTEiJ_G0025322.1 mouse_genomes_project 2 91760958 91763421 + Kbtbd4 protein_coding processed_transcript MGP_CASTEiJ_T0058872.1 MGP_CASTEiJ_G0025978.1 mouse_genomes_project 2 162508189 162608581 + Ppp1r16b protein_coding retained_intron MGP_CASTEiJ_T0058873.1 MGP_CASTEiJ_G0025978.1 mouse_genomes_project 2 162508189 162618456 + MGP_CASTEiJ_P0058873 Ppp1r16b protein_coding protein_coding MGP_CASTEiJ_T0058874.1 MGP_CASTEiJ_G0025978.1 mouse_genomes_project 2 162509524 162618456 + MGP_CASTEiJ_P0058874 Ppp1r16b protein_coding protein_coding MGP_CASTEiJ_T0058875.1 MGP_CASTEiJ_G0025978.1 mouse_genomes_project 2 162509916 162618456 + MGP_CASTEiJ_P0058875 Ppp1r16b protein_coding protein_coding MGP_CASTEiJ_T0058876.1 MGP_CASTEiJ_G0025978.1 mouse_genomes_project 2 162543421 162618456 + MGP_CASTEiJ_P0058876 Ppp1r16b protein_coding protein_coding MGP_CASTEiJ_T0013095.1 MGP_CASTEiJ_G0011258.1 mouse_genomes_project 2 35884373 35885169 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100875.1 MGP_CASTEiJ_G0037788.1 mouse_genomes_project 2 52634936 52635045 - Gm23315 snoRNA snoRNA MGP_CASTEiJ_T0057181.1 MGP_CASTEiJ_G0025592.1 mouse_genomes_project 2 124365067 124369045 + MGP_CASTEiJ_P0057181 Duoxa2 protein_coding protein_coding MGP_CASTEiJ_T0059087.1 MGP_CASTEiJ_G0026035.1 mouse_genomes_project 2 168727144 168730810 - MGP_CASTEiJ_P0059087 Spint3 protein_coding protein_coding MGP_CASTEiJ_T0013454.1 MGP_CASTEiJ_G0011617.1 mouse_genomes_project 2 181984752 181985338 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100922.1 MGP_CASTEiJ_G0037835.1 mouse_genomes_project 2 162191307 162191420 - Gm26003 snoRNA snoRNA MGP_CASTEiJ_T0013343.1 MGP_CASTEiJ_G0011506.1 mouse_genomes_project 2 133468858 133469326 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057942.1 MGP_CASTEiJ_G0025762.1 mouse_genomes_project 2 147312320 147322075 + MGP_CASTEiJ_P0057942 Mgme1 protein_coding protein_coding MGP_CASTEiJ_T0057943.1 MGP_CASTEiJ_G0025762.1 mouse_genomes_project 2 147312557 147322782 + MGP_CASTEiJ_P0057943 Mgme1 protein_coding protein_coding MGP_CASTEiJ_T0057944.1 MGP_CASTEiJ_G0025762.1 mouse_genomes_project 2 147312598 147322075 + MGP_CASTEiJ_P0057944 Mgme1 protein_coding protein_coding MGP_CASTEiJ_T0059687.1 MGP_CASTEiJ_G0026176.1 mouse_genomes_project 2 183531880 183541711 + MGP_CASTEiJ_P0059687 Gid8 protein_coding protein_coding MGP_CASTEiJ_T0059688.1 MGP_CASTEiJ_G0026176.1 mouse_genomes_project 2 183533450 183536509 + Gid8 protein_coding processed_transcript MGP_CASTEiJ_T0059689.1 MGP_CASTEiJ_G0026176.1 mouse_genomes_project 2 183534314 183541708 + MGP_CASTEiJ_P0059689 Gid8 protein_coding protein_coding MGP_CASTEiJ_T0055330.1 MGP_CASTEiJ_G0025061.1 mouse_genomes_project 2 76590815 76593763 + MGP_CASTEiJ_P0055330 Dfnb59 protein_coding protein_coding MGP_CASTEiJ_T0055331.1 MGP_CASTEiJ_G0025061.1 mouse_genomes_project 2 76590838 76597091 + MGP_CASTEiJ_P0055331 Dfnb59 protein_coding protein_coding MGP_CASTEiJ_T0055332.1 MGP_CASTEiJ_G0025061.1 mouse_genomes_project 2 76592610 76599658 + MGP_CASTEiJ_P0055332 Dfnb59 protein_coding protein_coding MGP_CASTEiJ_T0055740.1 MGP_CASTEiJ_G0025230.1 mouse_genomes_project 2 88630731 88631682 - MGP_CASTEiJ_P0055740 Olfr1163 protein_coding protein_coding MGP_CASTEiJ_T0052738.1 MGP_CASTEiJ_G0024596.1 mouse_genomes_project 2 20778406 20860956 + MGP_CASTEiJ_P0052738 Nxph2 protein_coding protein_coding MGP_CASTEiJ_T0013181.1 MGP_CASTEiJ_G0011344.1 mouse_genomes_project 2 72223337 72223725 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054885.1 MGP_CASTEiJ_G0024971.1 mouse_genomes_project 2 63119424 63252194 - MGP_CASTEiJ_P0054885 Fign protein_coding protein_coding MGP_CASTEiJ_T0054886.1 MGP_CASTEiJ_G0024971.1 mouse_genomes_project 2 63125218 63252220 - MGP_CASTEiJ_P0054886 Fign protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054887.1 MGP_CASTEiJ_G0024971.1 mouse_genomes_project 2 63128321 63252170 - Fign protein_coding processed_transcript MGP_CASTEiJ_T0054888.1 MGP_CASTEiJ_G0024971.1 mouse_genomes_project 2 63128490 63252192 - Fign protein_coding processed_transcript MGP_CASTEiJ_T0013358.1 MGP_CASTEiJ_G0011521.1 mouse_genomes_project 2 139534581 139535051 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057981.1 MGP_CASTEiJ_G0025771.1 mouse_genomes_project 2 147664098 147834536 + MGP_CASTEiJ_P0057981 Dtd1 protein_coding protein_coding MGP_CASTEiJ_T0057982.1 MGP_CASTEiJ_G0025771.1 mouse_genomes_project 2 147683984 147834218 + Dtd1 protein_coding processed_transcript MGP_CASTEiJ_T0057983.1 MGP_CASTEiJ_G0025771.1 mouse_genomes_project 2 147742331 147811276 + Dtd1 protein_coding processed_transcript MGP_CASTEiJ_T0057984.1 MGP_CASTEiJ_G0025771.1 mouse_genomes_project 2 147795768 147834272 + Dtd1 protein_coding processed_transcript MGP_CASTEiJ_T0057985.1 MGP_CASTEiJ_G0025771.1 mouse_genomes_project 2 147802683 147834053 + Dtd1 protein_coding processed_transcript MGP_CASTEiJ_T0013302.1 MGP_CASTEiJ_G0011465.1 mouse_genomes_project 2 113223038 113223194 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057577.1 MGP_CASTEiJ_G0025685.1 mouse_genomes_project 2 132853350 132868822 + Vps16 protein_coding retained_intron MGP_CASTEiJ_T0057578.1 MGP_CASTEiJ_G0025685.1 mouse_genomes_project 2 132853376 132874618 + MGP_CASTEiJ_P0057578 Vps16 protein_coding protein_coding MGP_CASTEiJ_T0057579.1 MGP_CASTEiJ_G0025685.1 mouse_genomes_project 2 132853376 132870286 + MGP_CASTEiJ_P0057579 Vps16 protein_coding protein_coding MGP_CASTEiJ_T0057580.1 MGP_CASTEiJ_G0025685.1 mouse_genomes_project 2 132853415 132870665 + Vps16 protein_coding processed_transcript MGP_CASTEiJ_T0057581.1 MGP_CASTEiJ_G0025685.1 mouse_genomes_project 2 132868003 132869436 + Vps16 protein_coding retained_intron MGP_CASTEiJ_T0057582.1 MGP_CASTEiJ_G0025685.1 mouse_genomes_project 2 132869998 132872074 + Vps16 protein_coding retained_intron MGP_CASTEiJ_T0057583.1 MGP_CASTEiJ_G0025685.1 mouse_genomes_project 2 132870690 132871676 + Vps16 protein_coding retained_intron MGP_CASTEiJ_T0057584.1 MGP_CASTEiJ_G0025685.1 mouse_genomes_project 2 132871976 132873769 + Vps16 protein_coding retained_intron MGP_CASTEiJ_T0057585.1 MGP_CASTEiJ_G0025685.1 mouse_genomes_project 2 132873536 132874085 + Vps16 protein_coding retained_intron MGP_CASTEiJ_T0052658.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18366558 18490611 - MGP_CASTEiJ_P0052658 Arhgap21 protein_coding protein_coding MGP_CASTEiJ_T0052659.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18366558 18491765 - MGP_CASTEiJ_P0052659 Arhgap21 protein_coding protein_coding MGP_CASTEiJ_T0052660.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18366579 18490610 - MGP_CASTEiJ_P0052660 Arhgap21 protein_coding protein_coding MGP_CASTEiJ_T0052661.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18367233 18491410 - MGP_CASTEiJ_P0052661 Arhgap21 protein_coding protein_coding MGP_CASTEiJ_T0052662.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18368591 18371877 - Arhgap21 protein_coding retained_intron MGP_CASTEiJ_T0052663.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18368682 18405157 - MGP_CASTEiJ_P0052663 Arhgap21 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052664.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18368883 18378309 - Arhgap21 protein_coding retained_intron MGP_CASTEiJ_T0052665.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18369019 18373261 - Arhgap21 protein_coding retained_intron MGP_CASTEiJ_T0052666.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18371670 18374325 - Arhgap21 protein_coding processed_transcript MGP_CASTEiJ_T0052667.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18371671 18378302 - Arhgap21 protein_coding processed_transcript MGP_CASTEiJ_T0052668.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18372719 18490300 - MGP_CASTEiJ_P0052668 Arhgap21 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052669.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18377335 18389695 - MGP_CASTEiJ_P0052669 Arhgap21 protein_coding protein_coding MGP_CASTEiJ_T0052670.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18377849 18379522 - Arhgap21 protein_coding retained_intron MGP_CASTEiJ_T0052671.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18408609 18436697 - Arhgap21 protein_coding processed_transcript MGP_CASTEiJ_T0052672.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18412146 18465039 - MGP_CASTEiJ_P0052672 Arhgap21 protein_coding protein_coding MGP_CASTEiJ_T0052673.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18436802 18491509 - MGP_CASTEiJ_P0052673 Arhgap21 protein_coding protein_coding MGP_CASTEiJ_T0052674.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18490487 18491368 - Arhgap21 protein_coding processed_transcript MGP_CASTEiJ_T0052675.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18490512 18491716 - Arhgap21 protein_coding processed_transcript MGP_CASTEiJ_T0052676.1 MGP_CASTEiJ_G0024583.1 mouse_genomes_project 2 18490579 18491764 - Arhgap21 protein_coding processed_transcript MGP_CASTEiJ_T0013359.1 MGP_CASTEiJ_G0011522.1 mouse_genomes_project 2 141757321 141757635 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010085.1 MGP_CASTEiJ_G0008273.1 mouse_genomes_project 2 7753793 7753895 + Mir297a-3 miRNA miRNA MGP_CASTEiJ_T0056808.1 MGP_CASTEiJ_G0025529.1 mouse_genomes_project 2 121481093 121516937 + MGP_CASTEiJ_P0056808 Nusap1 protein_coding protein_coding MGP_CASTEiJ_T0056809.1 MGP_CASTEiJ_G0025529.1 mouse_genomes_project 2 121481489 121500699 + Nusap1 protein_coding processed_transcript MGP_CASTEiJ_T0056810.1 MGP_CASTEiJ_G0025529.1 mouse_genomes_project 2 121481512 121518189 + MGP_CASTEiJ_P0056810 Nusap1 protein_coding protein_coding MGP_CASTEiJ_T0056811.1 MGP_CASTEiJ_G0025529.1 mouse_genomes_project 2 121481524 121493553 + Nusap1 protein_coding processed_transcript MGP_CASTEiJ_T0003993.1 MGP_CASTEiJ_G0003541.1 mouse_genomes_project 2 150363234 150364222 + 6430503K07Rik antisense antisense MGP_CASTEiJ_T0052627.1 MGP_CASTEiJ_G0024577.1 mouse_genomes_project 2 16680440 16771287 + MGP_CASTEiJ_P0052627 Armc3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052628.1 MGP_CASTEiJ_G0024577.1 mouse_genomes_project 2 16681932 16771289 + MGP_CASTEiJ_P0052628 Armc3 protein_coding protein_coding MGP_CASTEiJ_T0052629.1 MGP_CASTEiJ_G0024577.1 mouse_genomes_project 2 16681932 16771289 + MGP_CASTEiJ_P0052629 Armc3 protein_coding protein_coding MGP_CASTEiJ_T0058041.1 MGP_CASTEiJ_G0025781.1 mouse_genomes_project 2 150178630 150247682 + MGP_CASTEiJ_P0058041 Xrn2 protein_coding protein_coding MGP_CASTEiJ_T0058042.1 MGP_CASTEiJ_G0025781.1 mouse_genomes_project 2 150178722 150237649 + MGP_CASTEiJ_P0058042 Xrn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058043.1 MGP_CASTEiJ_G0025781.1 mouse_genomes_project 2 150196674 150207028 + Xrn2 protein_coding retained_intron MGP_CASTEiJ_T0058044.1 MGP_CASTEiJ_G0025781.1 mouse_genomes_project 2 150211328 150216552 + Xrn2 protein_coding retained_intron MGP_CASTEiJ_T0058045.1 MGP_CASTEiJ_G0025781.1 mouse_genomes_project 2 150230194 150237653 + Xrn2 protein_coding retained_intron MGP_CASTEiJ_T0053522.1 MGP_CASTEiJ_G0024742.1 mouse_genomes_project 2 27596139 27612078 + MGP_CASTEiJ_P0053522 Slc27a4 protein_coding protein_coding MGP_CASTEiJ_T0053523.1 MGP_CASTEiJ_G0024742.1 mouse_genomes_project 2 27600503 27605458 + Slc27a4 protein_coding processed_transcript MGP_CASTEiJ_T0007222.1 MGP_CASTEiJ_G0005937.1 mouse_genomes_project 2 172753086 172759205 - Gm14262 lincRNA lincRNA MGP_CASTEiJ_T0098858.1 MGP_CASTEiJ_G0035783.1 mouse_genomes_project 2 1069409 1072754 + Gm10862 sense_intronic sense_intronic MGP_CASTEiJ_T0098584.1 MGP_CASTEiJ_G0035515.1 mouse_genomes_project 2 170974775 170974891 - Gm23152 rRNA rRNA MGP_CASTEiJ_T0052680.1 MGP_CASTEiJ_G0024585.1 mouse_genomes_project 2 18743907 18753286 + MGP_CASTEiJ_P0052680 Thnsl1 protein_coding protein_coding MGP_CASTEiJ_T0052681.1 MGP_CASTEiJ_G0024585.1 mouse_genomes_project 2 18743922 18752649 + MGP_CASTEiJ_P0052681 Thnsl1 protein_coding protein_coding MGP_CASTEiJ_T0052682.1 MGP_CASTEiJ_G0024585.1 mouse_genomes_project 2 18743942 18751517 + MGP_CASTEiJ_P0052682 Thnsl1 protein_coding protein_coding MGP_CASTEiJ_T0052683.1 MGP_CASTEiJ_G0024585.1 mouse_genomes_project 2 18743956 18749780 + MGP_CASTEiJ_P0052683 Thnsl1 protein_coding protein_coding MGP_CASTEiJ_T0052684.1 MGP_CASTEiJ_G0024585.1 mouse_genomes_project 2 18743970 18752581 + MGP_CASTEiJ_P0052684 Thnsl1 protein_coding protein_coding MGP_CASTEiJ_T0003912.1 MGP_CASTEiJ_G0003487.1 mouse_genomes_project 2 103165821 103169479 + Gm13920 antisense antisense MGP_CASTEiJ_T0052809.1 MGP_CASTEiJ_G0024610.1 mouse_genomes_project 2 22443241 22454498 - MGP_CASTEiJ_P0052809 Arrdc1 protein_coding protein_coding MGP_CASTEiJ_T0052810.1 MGP_CASTEiJ_G0024610.1 mouse_genomes_project 2 22443241 22454587 - MGP_CASTEiJ_P0052810 Arrdc1 protein_coding protein_coding MGP_CASTEiJ_T0052811.1 MGP_CASTEiJ_G0024610.1 mouse_genomes_project 2 22443244 22454480 - Arrdc1 protein_coding retained_intron MGP_CASTEiJ_T0052812.1 MGP_CASTEiJ_G0024610.1 mouse_genomes_project 2 22443878 22454502 - MGP_CASTEiJ_P0052812 Arrdc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052813.1 MGP_CASTEiJ_G0024610.1 mouse_genomes_project 2 22443944 22454480 - Arrdc1 protein_coding retained_intron MGP_CASTEiJ_T0052814.1 MGP_CASTEiJ_G0024610.1 mouse_genomes_project 2 22444047 22454477 - MGP_CASTEiJ_P0052814 Arrdc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052815.1 MGP_CASTEiJ_G0024610.1 mouse_genomes_project 2 22444072 22445090 - Arrdc1 protein_coding retained_intron MGP_CASTEiJ_T0052816.1 MGP_CASTEiJ_G0024610.1 mouse_genomes_project 2 22444212 22454509 - MGP_CASTEiJ_P0052816 Arrdc1 protein_coding protein_coding MGP_CASTEiJ_T0052817.1 MGP_CASTEiJ_G0024610.1 mouse_genomes_project 2 22444561 22445793 - Arrdc1 protein_coding retained_intron MGP_CASTEiJ_T0052818.1 MGP_CASTEiJ_G0024610.1 mouse_genomes_project 2 22444801 22454389 - MGP_CASTEiJ_P0052818 Arrdc1 protein_coding protein_coding MGP_CASTEiJ_T0052819.1 MGP_CASTEiJ_G0024610.1 mouse_genomes_project 2 22444884 22446021 - Arrdc1 protein_coding processed_transcript MGP_CASTEiJ_T0052820.1 MGP_CASTEiJ_G0024610.1 mouse_genomes_project 2 22445173 22454523 - Arrdc1 protein_coding retained_intron MGP_CASTEiJ_T0055474.1 MGP_CASTEiJ_G0025084.1 mouse_genomes_project 2 83198166 83272773 + MGP_CASTEiJ_P0055474 Fsip2 protein_coding protein_coding MGP_CASTEiJ_T0055475.1 MGP_CASTEiJ_G0025084.1 mouse_genomes_project 2 83198184 83265415 + MGP_CASTEiJ_P0055475 Fsip2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055476.1 MGP_CASTEiJ_G0025084.1 mouse_genomes_project 2 83204952 83225301 + MGP_CASTEiJ_P0055476 Fsip2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055477.1 MGP_CASTEiJ_G0025084.1 mouse_genomes_project 2 83245585 83272773 + MGP_CASTEiJ_P0055477 Fsip2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013185.1 MGP_CASTEiJ_G0011348.1 mouse_genomes_project 2 72938504 72938849 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052491.1 MGP_CASTEiJ_G0024552.1 mouse_genomes_project 2 10813140 10856880 - MGP_CASTEiJ_P0052491 Trdmt1 protein_coding protein_coding MGP_CASTEiJ_T0052492.1 MGP_CASTEiJ_G0024552.1 mouse_genomes_project 2 10822525 10856862 - Trdmt1 protein_coding processed_transcript MGP_CASTEiJ_T0052493.1 MGP_CASTEiJ_G0024552.1 mouse_genomes_project 2 10828541 10856875 - MGP_CASTEiJ_P0052493 Trdmt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053271.1 MGP_CASTEiJ_G0024694.1 mouse_genomes_project 2 24510005 24515107 - Surf6 protein_coding processed_transcript MGP_CASTEiJ_T0053272.1 MGP_CASTEiJ_G0024694.1 mouse_genomes_project 2 24510302 24514669 - Surf6 protein_coding processed_transcript MGP_CASTEiJ_T0053273.1 MGP_CASTEiJ_G0024694.1 mouse_genomes_project 2 24510366 24523325 - Surf6 protein_coding processed_transcript MGP_CASTEiJ_T0053274.1 MGP_CASTEiJ_G0024694.1 mouse_genomes_project 2 24512932 24526801 - MGP_CASTEiJ_P0053274 Surf6 protein_coding protein_coding MGP_CASTEiJ_T0053275.1 MGP_CASTEiJ_G0024694.1 mouse_genomes_project 2 24513267 24526772 - MGP_CASTEiJ_P0053275 Surf6 protein_coding protein_coding MGP_CASTEiJ_T0053276.1 MGP_CASTEiJ_G0024694.1 mouse_genomes_project 2 24515170 24526712 - Surf6 protein_coding processed_transcript MGP_CASTEiJ_T0053277.1 MGP_CASTEiJ_G0024694.1 mouse_genomes_project 2 24522993 24523668 - Surf6 protein_coding processed_transcript MGP_CASTEiJ_T0007154.1 MGP_CASTEiJ_G0005881.1 mouse_genomes_project 2 140471708 140645376 + Gm14064 lincRNA lincRNA MGP_CASTEiJ_T0053461.1 MGP_CASTEiJ_G0024732.1 mouse_genomes_project 2 26677190 26809203 - MGP_CASTEiJ_P0053461 Cfap77 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053462.1 MGP_CASTEiJ_G0024732.1 mouse_genomes_project 2 26677194 26809218 - MGP_CASTEiJ_P0053462 Cfap77 protein_coding protein_coding MGP_CASTEiJ_T0053463.1 MGP_CASTEiJ_G0024732.1 mouse_genomes_project 2 26678036 26792616 - Cfap77 protein_coding processed_transcript MGP_CASTEiJ_T0053464.1 MGP_CASTEiJ_G0024732.1 mouse_genomes_project 2 26704838 26809245 - MGP_CASTEiJ_P0053464 Cfap77 protein_coding protein_coding MGP_CASTEiJ_T0053465.1 MGP_CASTEiJ_G0024732.1 mouse_genomes_project 2 26806044 26809238 - Cfap77 protein_coding processed_transcript MGP_CASTEiJ_T0102243.1 MGP_CASTEiJ_G0038968.1 mouse_genomes_project 2 89416526 89417425 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010122.1 MGP_CASTEiJ_G0008310.1 mouse_genomes_project 2 30736884 30737021 - Mir8093 miRNA miRNA MGP_CASTEiJ_T0013098.1 MGP_CASTEiJ_G0011261.1 mouse_genomes_project 2 37471394 37472120 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056201.1 MGP_CASTEiJ_G0025366.1 mouse_genomes_project 2 94935526 94950944 - MGP_CASTEiJ_P0056201 Accsl protein_coding protein_coding MGP_CASTEiJ_T0056202.1 MGP_CASTEiJ_G0025366.1 mouse_genomes_project 2 94935527 94937191 - MGP_CASTEiJ_P0056202 Accsl protein_coding protein_coding MGP_CASTEiJ_T0056203.1 MGP_CASTEiJ_G0025366.1 mouse_genomes_project 2 94935532 94936907 - Accsl protein_coding processed_transcript MGP_CASTEiJ_T0056204.1 MGP_CASTEiJ_G0025366.1 mouse_genomes_project 2 94941311 94946566 - Accsl protein_coding processed_transcript MGP_CASTEiJ_T0056205.1 MGP_CASTEiJ_G0025366.1 mouse_genomes_project 2 94942026 94950944 - Accsl protein_coding processed_transcript MGP_CASTEiJ_T0056206.1 MGP_CASTEiJ_G0025366.1 mouse_genomes_project 2 94947631 94950869 - MGP_CASTEiJ_P0056206 Accsl protein_coding protein_coding MGP_CASTEiJ_T0056207.1 MGP_CASTEiJ_G0025366.1 mouse_genomes_project 2 94947631 94950859 - MGP_CASTEiJ_P0056207 Accsl protein_coding protein_coding MGP_CASTEiJ_T0056208.1 MGP_CASTEiJ_G0025366.1 mouse_genomes_project 2 94947786 94950480 - Accsl protein_coding processed_transcript MGP_CASTEiJ_T0013407.1 MGP_CASTEiJ_G0011570.1 mouse_genomes_project 2 158765776 158766405 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003988.1 MGP_CASTEiJ_G0003536.1 mouse_genomes_project 2 147281438 147283037 + 4930444E06Rik antisense antisense MGP_CASTEiJ_T0007196.1 MGP_CASTEiJ_G0005915.1 mouse_genomes_project 2 166677849 166678914 + Gm14246 lincRNA lincRNA MGP_CASTEiJ_T0053620.1 MGP_CASTEiJ_G0024754.1 mouse_genomes_project 2 28006827 28011798 - D2Wsu81e protein_coding retained_intron MGP_CASTEiJ_T0053621.1 MGP_CASTEiJ_G0024754.1 mouse_genomes_project 2 28006827 28011811 - D2Wsu81e protein_coding retained_intron MGP_CASTEiJ_T0053622.1 MGP_CASTEiJ_G0024754.1 mouse_genomes_project 2 28006842 28010872 - D2Wsu81e protein_coding retained_intron MGP_CASTEiJ_T0053623.1 MGP_CASTEiJ_G0024754.1 mouse_genomes_project 2 28006845 28011353 - D2Wsu81e protein_coding retained_intron MGP_CASTEiJ_T0053624.1 MGP_CASTEiJ_G0024754.1 mouse_genomes_project 2 28006845 28011819 - MGP_CASTEiJ_P0053624 D2Wsu81e protein_coding protein_coding MGP_CASTEiJ_T0053625.1 MGP_CASTEiJ_G0024754.1 mouse_genomes_project 2 28006847 28011828 - D2Wsu81e protein_coding retained_intron MGP_CASTEiJ_T0053626.1 MGP_CASTEiJ_G0024754.1 mouse_genomes_project 2 28008296 28011334 - D2Wsu81e protein_coding processed_transcript MGP_CASTEiJ_T0053627.1 MGP_CASTEiJ_G0024754.1 mouse_genomes_project 2 28009729 28011824 - D2Wsu81e protein_coding retained_intron MGP_CASTEiJ_T0055616.1 MGP_CASTEiJ_G0025120.1 mouse_genomes_project 2 85939301 85940338 + MGP_CASTEiJ_P0055616 Olfr996 protein_coding protein_coding MGP_CASTEiJ_T0052226.1 MGP_CASTEiJ_G0024513.1 mouse_genomes_project 2 1957756 1977992 + MGP_CASTEiJ_P0052226 Phyh protein_coding unknown_likely_coding MGP_CASTEiJ_T0052227.1 MGP_CASTEiJ_G0024513.1 mouse_genomes_project 2 1957766 1969746 + Phyh protein_coding processed_transcript MGP_CASTEiJ_T0052228.1 MGP_CASTEiJ_G0024513.1 mouse_genomes_project 2 1977664 1977992 + Phyh protein_coding processed_transcript MGP_CASTEiJ_T0054650.1 MGP_CASTEiJ_G0024931.1 mouse_genomes_project 2 51270837 51299692 - MGP_CASTEiJ_P0054650 protein_coding protein_coding MGP_CASTEiJ_T0054651.1 MGP_CASTEiJ_G0024931.1 mouse_genomes_project 2 51275241 51286114 - protein_coding retained_intron MGP_CASTEiJ_T0010171.1 MGP_CASTEiJ_G0008359.1 mouse_genomes_project 2 129161454 129161590 - Mir3473g miRNA miRNA MGP_CASTEiJ_T0013203.1 MGP_CASTEiJ_G0011366.1 mouse_genomes_project 2 79471002 79471533 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017098.1 MGP_CASTEiJ_G0014774.1 mouse_genomes_project 2 121156149 121160946 - Gm14207 processed_transcript processed_transcript MGP_CASTEiJ_T0017099.1 MGP_CASTEiJ_G0014774.1 mouse_genomes_project 2 121156149 121160295 - Gm14207 processed_transcript processed_transcript MGP_CASTEiJ_T0017100.1 MGP_CASTEiJ_G0014774.1 mouse_genomes_project 2 121156302 121160316 - Gm14207 processed_transcript processed_transcript MGP_CASTEiJ_T0003797.1 MGP_CASTEiJ_G0003402.1 mouse_genomes_project 2 23268949 23272843 - A230005M16Rik antisense antisense MGP_CASTEiJ_T0003798.1 MGP_CASTEiJ_G0003402.1 mouse_genomes_project 2 23269607 23271382 - A230005M16Rik antisense antisense MGP_CASTEiJ_T0058225.1 MGP_CASTEiJ_G0025838.1 mouse_genomes_project 2 155713659 155716720 - MGP_CASTEiJ_P0058225 Zcchc3 protein_coding protein_coding MGP_CASTEiJ_T0052685.1 MGP_CASTEiJ_G0024586.1 mouse_genomes_project 2 18895407 19394040 + MGP_CASTEiJ_P0052685 Gpr158 protein_coding protein_coding MGP_CASTEiJ_T0052686.1 MGP_CASTEiJ_G0024586.1 mouse_genomes_project 2 18895432 19368071 + Gpr158 protein_coding retained_intron MGP_CASTEiJ_T0055674.1 MGP_CASTEiJ_G0025175.1 mouse_genomes_project 2 87452088 87453027 - MGP_CASTEiJ_P0055674 Olfr1099 protein_coding protein_coding MGP_CASTEiJ_T0054156.1 MGP_CASTEiJ_G0024831.1 mouse_genomes_project 2 31684472 31771827 - MGP_CASTEiJ_P0054156 Lmx1b protein_coding protein_coding MGP_CASTEiJ_T0054157.1 MGP_CASTEiJ_G0024831.1 mouse_genomes_project 2 31687851 31771727 - MGP_CASTEiJ_P0054157 Lmx1b protein_coding protein_coding MGP_CASTEiJ_T0054158.1 MGP_CASTEiJ_G0024831.1 mouse_genomes_project 2 31690679 31763550 - Lmx1b protein_coding processed_transcript MGP_CASTEiJ_T0059591.1 MGP_CASTEiJ_G0026155.1 mouse_genomes_project 2 182189035 182668513 + MGP_CASTEiJ_P0059591 Cdh4 protein_coding protein_coding MGP_CASTEiJ_T0059592.1 MGP_CASTEiJ_G0026155.1 mouse_genomes_project 2 182189197 182731176 + MGP_CASTEiJ_P0059592 Cdh4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059593.1 MGP_CASTEiJ_G0026155.1 mouse_genomes_project 2 182189226 182616815 + MGP_CASTEiJ_P0059593 Cdh4 protein_coding protein_coding MGP_CASTEiJ_T0059594.1 MGP_CASTEiJ_G0026155.1 mouse_genomes_project 2 182190819 182548488 + Cdh4 protein_coding processed_transcript MGP_CASTEiJ_T0059595.1 MGP_CASTEiJ_G0026155.1 mouse_genomes_project 2 182544002 182568202 + Cdh4 protein_coding processed_transcript MGP_CASTEiJ_T0059596.1 MGP_CASTEiJ_G0026155.1 mouse_genomes_project 2 182663039 182665291 + Cdh4 protein_coding retained_intron MGP_CASTEiJ_T0059597.1 MGP_CASTEiJ_G0026155.1 mouse_genomes_project 2 182663064 182663841 + MGP_CASTEiJ_P0059597 Cdh4 protein_coding protein_coding MGP_CASTEiJ_T0017101.1 MGP_CASTEiJ_G0014775.1 mouse_genomes_project 2 122140301 122140988 - Gm13997 processed_transcript processed_transcript MGP_CASTEiJ_T0011178.1 MGP_CASTEiJ_G0009366.1 mouse_genomes_project 2 106426201 106426323 - Gm27636 misc_RNA misc_RNA MGP_CASTEiJ_T0100927.1 MGP_CASTEiJ_G0037840.1 mouse_genomes_project 2 164961672 164961797 + Gm25561 snoRNA snoRNA MGP_CASTEiJ_T0013154.1 MGP_CASTEiJ_G0011317.1 mouse_genomes_project 2 58345442 58346260 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052254.1 MGP_CASTEiJ_G0024519.1 mouse_genomes_project 2 2870419 2923640 - MGP_CASTEiJ_P0052254 Cdc123 protein_coding protein_coding MGP_CASTEiJ_T0052255.1 MGP_CASTEiJ_G0024519.1 mouse_genomes_project 2 2870790 2874685 - Cdc123 protein_coding processed_transcript MGP_CASTEiJ_T0052256.1 MGP_CASTEiJ_G0024519.1 mouse_genomes_project 2 2874446 2880459 - Cdc123 protein_coding retained_intron MGP_CASTEiJ_T0052257.1 MGP_CASTEiJ_G0024519.1 mouse_genomes_project 2 2880916 2886906 - Cdc123 protein_coding processed_transcript MGP_CASTEiJ_T0052258.1 MGP_CASTEiJ_G0024519.1 mouse_genomes_project 2 2881035 2911472 - Cdc123 protein_coding retained_intron MGP_CASTEiJ_T0052259.1 MGP_CASTEiJ_G0024519.1 mouse_genomes_project 2 2885638 2911966 - MGP_CASTEiJ_P0052259 Cdc123 protein_coding protein_coding MGP_CASTEiJ_T0052260.1 MGP_CASTEiJ_G0024519.1 mouse_genomes_project 2 2886801 2923417 - Cdc123 protein_coding retained_intron MGP_CASTEiJ_T0052261.1 MGP_CASTEiJ_G0024519.1 mouse_genomes_project 2 2898462 2900483 - Cdc123 protein_coding retained_intron MGP_CASTEiJ_T0052262.1 MGP_CASTEiJ_G0024519.1 mouse_genomes_project 2 2900179 2923327 - Cdc123 protein_coding processed_transcript MGP_CASTEiJ_T0058798.1 MGP_CASTEiJ_G0025963.1 mouse_genomes_project 2 161330830 161333253 + MGP_CASTEiJ_P0058798 Nnat protein_coding protein_coding MGP_CASTEiJ_T0058799.1 MGP_CASTEiJ_G0025963.1 mouse_genomes_project 2 161330859 161332987 + MGP_CASTEiJ_P0058799 Nnat protein_coding protein_coding MGP_CASTEiJ_T0058800.1 MGP_CASTEiJ_G0025963.1 mouse_genomes_project 2 161330862 161333271 + MGP_CASTEiJ_P0058800 Nnat protein_coding protein_coding MGP_CASTEiJ_T0058801.1 MGP_CASTEiJ_G0025963.1 mouse_genomes_project 2 161330868 161333253 + MGP_CASTEiJ_P0058801 Nnat protein_coding protein_coding MGP_CASTEiJ_T0058802.1 MGP_CASTEiJ_G0025963.1 mouse_genomes_project 2 161330873 161332741 + MGP_CASTEiJ_P0058802 Nnat protein_coding protein_coding MGP_CASTEiJ_T0058803.1 MGP_CASTEiJ_G0025963.1 mouse_genomes_project 2 161330875 161332121 + MGP_CASTEiJ_P0058803 Nnat protein_coding protein_coding MGP_CASTEiJ_T0058804.1 MGP_CASTEiJ_G0025963.1 mouse_genomes_project 2 161330876 161332531 + MGP_CASTEiJ_P0058804 Nnat protein_coding protein_coding MGP_CASTEiJ_T0058805.1 MGP_CASTEiJ_G0025963.1 mouse_genomes_project 2 161330882 161332529 + MGP_CASTEiJ_P0058805 Nnat protein_coding protein_coding MGP_CASTEiJ_T0058806.1 MGP_CASTEiJ_G0025963.1 mouse_genomes_project 2 161330892 161333266 + Nnat protein_coding retained_intron MGP_CASTEiJ_T0058807.1 MGP_CASTEiJ_G0025963.1 mouse_genomes_project 2 161331757 161332604 + Nnat protein_coding retained_intron MGP_CASTEiJ_T0059025.1 MGP_CASTEiJ_G0026013.1 mouse_genomes_project 2 168160879 168174459 - Tomm34 protein_coding retained_intron MGP_CASTEiJ_T0059026.1 MGP_CASTEiJ_G0026013.1 mouse_genomes_project 2 168160879 168179820 - MGP_CASTEiJ_P0059026 Tomm34 protein_coding protein_coding MGP_CASTEiJ_T0059027.1 MGP_CASTEiJ_G0026013.1 mouse_genomes_project 2 168160879 168179887 - MGP_CASTEiJ_P0059027 Tomm34 protein_coding protein_coding MGP_CASTEiJ_T0059028.1 MGP_CASTEiJ_G0026013.1 mouse_genomes_project 2 168163357 168179344 - MGP_CASTEiJ_P0059028 Tomm34 protein_coding unknown_likely_coding MGP_CASTEiJ_T0013355.1 MGP_CASTEiJ_G0011518.1 mouse_genomes_project 2 137406251 137406564 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054773.1 MGP_CASTEiJ_G0024954.1 mouse_genomes_project 2 58876922 58992652 - MGP_CASTEiJ_P0054773 Baz2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0054774.1 MGP_CASTEiJ_G0024954.1 mouse_genomes_project 2 58876926 59114873 - MGP_CASTEiJ_P0054774 Baz2b protein_coding protein_coding MGP_CASTEiJ_T0054775.1 MGP_CASTEiJ_G0024954.1 mouse_genomes_project 2 58877008 58987170 - MGP_CASTEiJ_P0054775 Baz2b protein_coding protein_coding MGP_CASTEiJ_T0054776.1 MGP_CASTEiJ_G0024954.1 mouse_genomes_project 2 58880750 58892407 - MGP_CASTEiJ_P0054776 Baz2b protein_coding protein_coding MGP_CASTEiJ_T0054777.1 MGP_CASTEiJ_G0024954.1 mouse_genomes_project 2 58894048 58903789 - Baz2b protein_coding processed_transcript MGP_CASTEiJ_T0054778.1 MGP_CASTEiJ_G0024954.1 mouse_genomes_project 2 58896784 58900425 - Baz2b protein_coding processed_transcript MGP_CASTEiJ_T0054779.1 MGP_CASTEiJ_G0024954.1 mouse_genomes_project 2 58904578 58927359 - MGP_CASTEiJ_P0054779 Baz2b protein_coding protein_coding MGP_CASTEiJ_T0054780.1 MGP_CASTEiJ_G0024954.1 mouse_genomes_project 2 58932613 58939685 - Baz2b protein_coding processed_transcript MGP_CASTEiJ_T0054781.1 MGP_CASTEiJ_G0024954.1 mouse_genomes_project 2 58958126 59114916 - Baz2b protein_coding processed_transcript MGP_CASTEiJ_T0054782.1 MGP_CASTEiJ_G0024954.1 mouse_genomes_project 2 58964947 59078141 - Baz2b protein_coding processed_transcript MGP_CASTEiJ_T0054783.1 MGP_CASTEiJ_G0024954.1 mouse_genomes_project 2 58985532 59114768 - Baz2b protein_coding processed_transcript MGP_CASTEiJ_T0054784.1 MGP_CASTEiJ_G0024954.1 mouse_genomes_project 2 59062078 59207616 - Baz2b protein_coding processed_transcript MGP_CASTEiJ_T0054785.1 MGP_CASTEiJ_G0024954.1 mouse_genomes_project 2 59203914 59207578 - Baz2b protein_coding processed_transcript MGP_CASTEiJ_T0054786.1 MGP_CASTEiJ_G0024954.1 mouse_genomes_project 2 59204381 59206940 - Baz2b protein_coding processed_transcript MGP_CASTEiJ_T0054787.1 MGP_CASTEiJ_G0024954.1 mouse_genomes_project 2 59204382 59207525 - Baz2b protein_coding processed_transcript MGP_CASTEiJ_T0013244.1 MGP_CASTEiJ_G0011407.1 mouse_genomes_project 2 92240961 92241129 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102245.1 MGP_CASTEiJ_G0038970.1 mouse_genomes_project 2 90929792 90930717 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0003819.1 MGP_CASTEiJ_G0003419.1 mouse_genomes_project 2 29601353 29608490 - Gm13425 antisense antisense MGP_CASTEiJ_T0053456.1 MGP_CASTEiJ_G0024731.1 mouse_genomes_project 2 26653526 26663493 - MGP_CASTEiJ_P0053456 Barhl1 protein_coding protein_coding MGP_CASTEiJ_T0053457.1 MGP_CASTEiJ_G0024731.1 mouse_genomes_project 2 26653531 26658347 - Barhl1 protein_coding processed_transcript MGP_CASTEiJ_T0053458.1 MGP_CASTEiJ_G0024731.1 mouse_genomes_project 2 26654820 26663512 - MGP_CASTEiJ_P0053458 Barhl1 protein_coding protein_coding MGP_CASTEiJ_T0053459.1 MGP_CASTEiJ_G0024731.1 mouse_genomes_project 2 26654820 26663750 - MGP_CASTEiJ_P0053459 Barhl1 protein_coding protein_coding MGP_CASTEiJ_T0053460.1 MGP_CASTEiJ_G0024731.1 mouse_genomes_project 2 26655491 26662586 - Barhl1 protein_coding processed_transcript MGP_CASTEiJ_T0054469.1 MGP_CASTEiJ_G0024906.1 mouse_genomes_project 2 37327189 37378663 - MGP_CASTEiJ_P0054469 Golga1 protein_coding protein_coding MGP_CASTEiJ_T0054470.1 MGP_CASTEiJ_G0024906.1 mouse_genomes_project 2 37327295 37378610 - MGP_CASTEiJ_P0054470 Golga1 protein_coding protein_coding MGP_CASTEiJ_T0054471.1 MGP_CASTEiJ_G0024906.1 mouse_genomes_project 2 37327536 37365888 - MGP_CASTEiJ_P0054471 Golga1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054472.1 MGP_CASTEiJ_G0024906.1 mouse_genomes_project 2 37327812 37329440 - Golga1 protein_coding processed_transcript MGP_CASTEiJ_T0054473.1 MGP_CASTEiJ_G0024906.1 mouse_genomes_project 2 37328686 37329600 - Golga1 protein_coding retained_intron MGP_CASTEiJ_T0054474.1 MGP_CASTEiJ_G0024906.1 mouse_genomes_project 2 37328686 37378610 - MGP_CASTEiJ_P0054474 Golga1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054475.1 MGP_CASTEiJ_G0024906.1 mouse_genomes_project 2 37328846 37330595 - MGP_CASTEiJ_P0054475 Golga1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054476.1 MGP_CASTEiJ_G0024906.1 mouse_genomes_project 2 37329187 37330275 - Golga1 protein_coding retained_intron MGP_CASTEiJ_T0054477.1 MGP_CASTEiJ_G0024906.1 mouse_genomes_project 2 37333745 37378610 - Golga1 protein_coding retained_intron MGP_CASTEiJ_T0054478.1 MGP_CASTEiJ_G0024906.1 mouse_genomes_project 2 37353447 37368994 - MGP_CASTEiJ_P0054478 Golga1 protein_coding protein_coding MGP_CASTEiJ_T0054479.1 MGP_CASTEiJ_G0024906.1 mouse_genomes_project 2 37359954 37378607 - Golga1 protein_coding retained_intron MGP_CASTEiJ_T0059813.1 MGP_CASTEiJ_G0026197.1 mouse_genomes_project 2 184252370 184255405 + MGP_CASTEiJ_P0059813 Lime1 protein_coding protein_coding MGP_CASTEiJ_T0059814.1 MGP_CASTEiJ_G0026197.1 mouse_genomes_project 2 184253527 184255918 + MGP_CASTEiJ_P0059814 Lime1 protein_coding protein_coding MGP_CASTEiJ_T0059815.1 MGP_CASTEiJ_G0026197.1 mouse_genomes_project 2 184253650 184255844 + Lime1 protein_coding retained_intron MGP_CASTEiJ_T0059816.1 MGP_CASTEiJ_G0026197.1 mouse_genomes_project 2 184253650 184255244 + Lime1 protein_coding retained_intron MGP_CASTEiJ_T0059817.1 MGP_CASTEiJ_G0026197.1 mouse_genomes_project 2 184253650 184255913 + MGP_CASTEiJ_P0059817 Lime1 protein_coding protein_coding MGP_CASTEiJ_T0059818.1 MGP_CASTEiJ_G0026197.1 mouse_genomes_project 2 184254161 184255918 + MGP_CASTEiJ_P0059818 Lime1 protein_coding protein_coding MGP_CASTEiJ_T0059819.1 MGP_CASTEiJ_G0026197.1 mouse_genomes_project 2 184254775 184255603 + Lime1 protein_coding retained_intron MGP_CASTEiJ_T0055651.1 MGP_CASTEiJ_G0025153.1 mouse_genomes_project 2 86692421 86693384 - MGP_CASTEiJ_P0055651 Olfr1048 protein_coding protein_coding MGP_CASTEiJ_T0053046.1 MGP_CASTEiJ_G0024649.1 mouse_genomes_project 2 23051788 23056559 + MGP_CASTEiJ_P0053046 Fbxw5 protein_coding protein_coding MGP_CASTEiJ_T0053047.1 MGP_CASTEiJ_G0024649.1 mouse_genomes_project 2 23051872 23054608 + Fbxw5 protein_coding processed_transcript MGP_CASTEiJ_T0053048.1 MGP_CASTEiJ_G0024649.1 mouse_genomes_project 2 23051874 23054871 + Fbxw5 protein_coding processed_transcript MGP_CASTEiJ_T0053049.1 MGP_CASTEiJ_G0024649.1 mouse_genomes_project 2 23051915 23054244 + Fbxw5 protein_coding processed_transcript MGP_CASTEiJ_T0053050.1 MGP_CASTEiJ_G0024649.1 mouse_genomes_project 2 23051935 23054662 + Fbxw5 protein_coding processed_transcript MGP_CASTEiJ_T0053051.1 MGP_CASTEiJ_G0024649.1 mouse_genomes_project 2 23053615 23054642 + Fbxw5 protein_coding processed_transcript MGP_CASTEiJ_T0053052.1 MGP_CASTEiJ_G0024649.1 mouse_genomes_project 2 23054095 23054858 + Fbxw5 protein_coding processed_transcript MGP_CASTEiJ_T0053053.1 MGP_CASTEiJ_G0024649.1 mouse_genomes_project 2 23054283 23055892 + MGP_CASTEiJ_P0053053 Fbxw5 protein_coding protein_coding MGP_CASTEiJ_T0053054.1 MGP_CASTEiJ_G0024649.1 mouse_genomes_project 2 23054964 23056003 + Fbxw5 protein_coding processed_transcript MGP_CASTEiJ_T0056597.1 MGP_CASTEiJ_G0025478.1 mouse_genomes_project 2 114871214 115285266 + MGP_CASTEiJ_P0056597 Fmn1 protein_coding protein_coding MGP_CASTEiJ_T0056598.1 MGP_CASTEiJ_G0025478.1 mouse_genomes_project 2 114871249 115055244 + Fmn1 protein_coding processed_transcript MGP_CASTEiJ_T0056599.1 MGP_CASTEiJ_G0025478.1 mouse_genomes_project 2 114871260 115278359 + MGP_CASTEiJ_P0056599 Fmn1 protein_coding protein_coding MGP_CASTEiJ_T0056600.1 MGP_CASTEiJ_G0025478.1 mouse_genomes_project 2 114911548 115278110 + MGP_CASTEiJ_P0056600 Fmn1 protein_coding protein_coding MGP_CASTEiJ_T0056601.1 MGP_CASTEiJ_G0025478.1 mouse_genomes_project 2 114997436 115278359 + MGP_CASTEiJ_P0056601 Fmn1 protein_coding protein_coding MGP_CASTEiJ_T0056602.1 MGP_CASTEiJ_G0025478.1 mouse_genomes_project 2 114997491 115327720 + MGP_CASTEiJ_P0056602 Fmn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056603.1 MGP_CASTEiJ_G0025478.1 mouse_genomes_project 2 115251092 115259126 + Fmn1 protein_coding processed_transcript MGP_CASTEiJ_T0056604.1 MGP_CASTEiJ_G0025478.1 mouse_genomes_project 2 115251107 115278356 + Fmn1 protein_coding processed_transcript MGP_CASTEiJ_T0056605.1 MGP_CASTEiJ_G0025478.1 mouse_genomes_project 2 115251107 115278238 + Fmn1 protein_coding processed_transcript MGP_CASTEiJ_T0056606.1 MGP_CASTEiJ_G0025478.1 mouse_genomes_project 2 115277174 115278234 + Fmn1 protein_coding processed_transcript MGP_CASTEiJ_T0054966.1 MGP_CASTEiJ_G0024984.1 mouse_genomes_project 2 66771289 66853377 + MGP_CASTEiJ_P0054966 Xirp2 protein_coding protein_coding MGP_CASTEiJ_T0054967.1 MGP_CASTEiJ_G0024984.1 mouse_genomes_project 2 66771289 66853385 + MGP_CASTEiJ_P0054967 Xirp2 protein_coding protein_coding MGP_CASTEiJ_T0054968.1 MGP_CASTEiJ_G0024984.1 mouse_genomes_project 2 66800230 66841571 + MGP_CASTEiJ_P0054968 Xirp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052728.1 MGP_CASTEiJ_G0024593.1 mouse_genomes_project 2 20561630 20605900 - MGP_CASTEiJ_P0052728 Mastl protein_coding protein_coding MGP_CASTEiJ_T0052729.1 MGP_CASTEiJ_G0024593.1 mouse_genomes_project 2 20586810 20605773 - Mastl protein_coding processed_transcript MGP_CASTEiJ_T0057189.1 MGP_CASTEiJ_G0025594.1 mouse_genomes_project 2 124381860 124415746 + MGP_CASTEiJ_P0057189 protein_coding protein_coding MGP_CASTEiJ_T0057190.1 MGP_CASTEiJ_G0025594.1 mouse_genomes_project 2 124385761 124466810 + MGP_CASTEiJ_P0057190 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057440.1 MGP_CASTEiJ_G0025650.1 mouse_genomes_project 2 130130674 130174601 + Acoxl protein_coding processed_transcript MGP_CASTEiJ_T0057441.1 MGP_CASTEiJ_G0025650.1 mouse_genomes_project 2 130150222 130438598 + MGP_CASTEiJ_P0057441 Acoxl protein_coding protein_coding MGP_CASTEiJ_T0057442.1 MGP_CASTEiJ_G0025650.1 mouse_genomes_project 2 130205544 130438233 + MGP_CASTEiJ_P0057442 Acoxl protein_coding protein_coding MGP_CASTEiJ_T0013451.1 MGP_CASTEiJ_G0011614.1 mouse_genomes_project 2 179503098 179503459 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007160.1 MGP_CASTEiJ_G0005886.1 mouse_genomes_project 2 149989641 150001126 - Gm14114 lincRNA lincRNA MGP_CASTEiJ_T0058821.1 MGP_CASTEiJ_G0025967.1 mouse_genomes_project 2 161828094 161849891 + Rprd1b protein_coding retained_intron MGP_CASTEiJ_T0058822.1 MGP_CASTEiJ_G0025967.1 mouse_genomes_project 2 161828278 161879638 + Rprd1b protein_coding processed_transcript MGP_CASTEiJ_T0058823.1 MGP_CASTEiJ_G0025967.1 mouse_genomes_project 2 161828287 161879638 + MGP_CASTEiJ_P0058823 Rprd1b protein_coding protein_coding MGP_CASTEiJ_T0058824.1 MGP_CASTEiJ_G0025967.1 mouse_genomes_project 2 161828307 161879638 + MGP_CASTEiJ_P0058824 Rprd1b protein_coding protein_coding MGP_CASTEiJ_T0058825.1 MGP_CASTEiJ_G0025967.1 mouse_genomes_project 2 161828385 161938575 + MGP_CASTEiJ_P0058825 Rprd1b protein_coding protein_coding MGP_CASTEiJ_T0058826.1 MGP_CASTEiJ_G0025967.1 mouse_genomes_project 2 161828456 161878751 + MGP_CASTEiJ_P0058826 Rprd1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0058827.1 MGP_CASTEiJ_G0025967.1 mouse_genomes_project 2 161844586 161876502 + MGP_CASTEiJ_P0058827 Rprd1b protein_coding protein_coding MGP_CASTEiJ_T0058828.1 MGP_CASTEiJ_G0025967.1 mouse_genomes_project 2 161849139 161871945 + MGP_CASTEiJ_P0058828 Rprd1b protein_coding protein_coding MGP_CASTEiJ_T0013289.1 MGP_CASTEiJ_G0011452.1 mouse_genomes_project 2 108392369 108392867 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013176.1 MGP_CASTEiJ_G0011339.1 mouse_genomes_project 2 69225638 69226263 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057605.1 MGP_CASTEiJ_G0025694.1 mouse_genomes_project 2 133115089 133130060 + MGP_CASTEiJ_P0057605 Itpa protein_coding protein_coding MGP_CASTEiJ_T0057606.1 MGP_CASTEiJ_G0025694.1 mouse_genomes_project 2 133115284 133124462 + Itpa protein_coding retained_intron MGP_CASTEiJ_T0057607.1 MGP_CASTEiJ_G0025694.1 mouse_genomes_project 2 133115287 133124169 + Itpa protein_coding processed_transcript MGP_CASTEiJ_T0057608.1 MGP_CASTEiJ_G0025694.1 mouse_genomes_project 2 133115305 133120762 + Itpa protein_coding retained_intron MGP_CASTEiJ_T0057609.1 MGP_CASTEiJ_G0025694.1 mouse_genomes_project 2 133115344 133129481 + Itpa protein_coding processed_transcript MGP_CASTEiJ_T0055818.1 MGP_CASTEiJ_G0025296.1 mouse_genomes_project 2 90604210 90605155 - MGP_CASTEiJ_P0055818 Olfr1254 protein_coding protein_coding MGP_CASTEiJ_T0055819.1 MGP_CASTEiJ_G0025296.1 mouse_genomes_project 2 90604210 90610347 - MGP_CASTEiJ_P0055819 Olfr1254 protein_coding protein_coding MGP_CASTEiJ_T0004062.1 MGP_CASTEiJ_G0003594.1 mouse_genomes_project 2 182887258 182888849 + Gm17180 antisense antisense MGP_CASTEiJ_T0010166.1 MGP_CASTEiJ_G0008354.1 mouse_genomes_project 2 121907691 121907754 + Mir7665 miRNA miRNA MGP_CASTEiJ_T0013276.1 MGP_CASTEiJ_G0011439.1 mouse_genomes_project 2 105041429 105041846 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006957.1 MGP_CASTEiJ_G0005724.1 mouse_genomes_project 2 8656800 8658734 + Gm13291 lincRNA lincRNA MGP_CASTEiJ_T0007092.1 MGP_CASTEiJ_G0005830.1 mouse_genomes_project 2 104384072 104388210 - Gm13869 lincRNA lincRNA MGP_CASTEiJ_T0055650.1 MGP_CASTEiJ_G0025152.1 mouse_genomes_project 2 86684143 86685103 - MGP_CASTEiJ_P0055650 Olfr1047 protein_coding protein_coding MGP_CASTEiJ_T0016991.1 MGP_CASTEiJ_G0014711.1 mouse_genomes_project 2 16212991 16233019 - Gm20539 processed_transcript processed_transcript MGP_CASTEiJ_T0058238.1 MGP_CASTEiJ_G0025848.1 mouse_genomes_project 2 155896214 155901914 - MGP_CASTEiJ_P0058238 Defb19 protein_coding protein_coding MGP_CASTEiJ_T0057381.1 MGP_CASTEiJ_G0025634.1 mouse_genomes_project 2 129535255 129548437 + MGP_CASTEiJ_P0057381 Tmem127 protein_coding protein_coding MGP_CASTEiJ_T0057382.1 MGP_CASTEiJ_G0025634.1 mouse_genomes_project 2 129535316 129544483 + MGP_CASTEiJ_P0057382 Tmem127 protein_coding protein_coding MGP_CASTEiJ_T0057383.1 MGP_CASTEiJ_G0025634.1 mouse_genomes_project 2 129535320 129544855 + MGP_CASTEiJ_P0057383 Tmem127 protein_coding protein_coding MGP_CASTEiJ_T0057256.1 MGP_CASTEiJ_G0025606.1 mouse_genomes_project 2 127346075 127433960 + MGP_CASTEiJ_P0057256 Slc12a1 protein_coding protein_coding MGP_CASTEiJ_T0057257.1 MGP_CASTEiJ_G0025606.1 mouse_genomes_project 2 127346150 127361173 + Slc12a1 protein_coding retained_intron MGP_CASTEiJ_T0057258.1 MGP_CASTEiJ_G0025606.1 mouse_genomes_project 2 127346170 127433957 + MGP_CASTEiJ_P0057258 Slc12a1 protein_coding protein_coding MGP_CASTEiJ_T0057259.1 MGP_CASTEiJ_G0025606.1 mouse_genomes_project 2 127346170 127433960 + MGP_CASTEiJ_P0057259 Slc12a1 protein_coding protein_coding MGP_CASTEiJ_T0052906.1 MGP_CASTEiJ_G0024626.1 mouse_genomes_project 2 22771029 22772203 - MGP_CASTEiJ_P0052906 Cysrt1 protein_coding protein_coding MGP_CASTEiJ_T0052907.1 MGP_CASTEiJ_G0024626.1 mouse_genomes_project 2 22771203 22772112 - MGP_CASTEiJ_P0052907 Cysrt1 protein_coding protein_coding MGP_CASTEiJ_T0052908.1 MGP_CASTEiJ_G0024626.1 mouse_genomes_project 2 22771371 22774655 - MGP_CASTEiJ_P0052908 Cysrt1 protein_coding protein_coding MGP_CASTEiJ_T0007250.1 MGP_CASTEiJ_G0005962.1 mouse_genomes_project 2 183667590 183734613 - Gm14342 lincRNA lincRNA MGP_CASTEiJ_T0055186.1 MGP_CASTEiJ_G0025025.1 mouse_genomes_project 2 71951539 72113111 + MGP_CASTEiJ_P0055186 Zak protein_coding protein_coding MGP_CASTEiJ_T0055187.1 MGP_CASTEiJ_G0025025.1 mouse_genomes_project 2 71951630 72074428 + MGP_CASTEiJ_P0055187 Zak protein_coding protein_coding MGP_CASTEiJ_T0055188.1 MGP_CASTEiJ_G0025025.1 mouse_genomes_project 2 71951666 72066115 + Zak protein_coding retained_intron MGP_CASTEiJ_T0055189.1 MGP_CASTEiJ_G0025025.1 mouse_genomes_project 2 71951679 72056695 + Zak protein_coding retained_intron MGP_CASTEiJ_T0055190.1 MGP_CASTEiJ_G0025025.1 mouse_genomes_project 2 71951696 72030911 + Zak protein_coding retained_intron MGP_CASTEiJ_T0055191.1 MGP_CASTEiJ_G0025025.1 mouse_genomes_project 2 71963996 72021687 + MGP_CASTEiJ_P0055191 Zak protein_coding protein_coding MGP_CASTEiJ_T0056564.1 MGP_CASTEiJ_G0025466.1 mouse_genomes_project 2 113682041 113683385 - MGP_CASTEiJ_P0056564 Nop10 protein_coding protein_coding MGP_CASTEiJ_T0053466.1 MGP_CASTEiJ_G0024733.1 mouse_genomes_project 2 26818668 26851453 + Ttf1 protein_coding retained_intron MGP_CASTEiJ_T0053467.1 MGP_CASTEiJ_G0024733.1 mouse_genomes_project 2 26823010 26851493 + MGP_CASTEiJ_P0053467 Ttf1 protein_coding protein_coding MGP_CASTEiJ_T0053468.1 MGP_CASTEiJ_G0024733.1 mouse_genomes_project 2 26838158 26844454 + Ttf1 protein_coding retained_intron MGP_CASTEiJ_T0053469.1 MGP_CASTEiJ_G0024733.1 mouse_genomes_project 2 26846085 26848742 + Ttf1 protein_coding retained_intron MGP_CASTEiJ_T0056484.1 MGP_CASTEiJ_G0025423.1 mouse_genomes_project 2 110515766 110718299 - Mettl15 protein_coding processed_transcript MGP_CASTEiJ_T0056485.1 MGP_CASTEiJ_G0025423.1 mouse_genomes_project 2 110515766 110718309 - MGP_CASTEiJ_P0056485 Mettl15 protein_coding protein_coding MGP_CASTEiJ_T0056486.1 MGP_CASTEiJ_G0025423.1 mouse_genomes_project 2 110548459 110720735 - MGP_CASTEiJ_P0056486 Mettl15 protein_coding protein_coding MGP_CASTEiJ_T0056487.1 MGP_CASTEiJ_G0025423.1 mouse_genomes_project 2 110678133 110720713 - Mettl15 protein_coding retained_intron MGP_CASTEiJ_T0056488.1 MGP_CASTEiJ_G0025423.1 mouse_genomes_project 2 110678198 110720689 - Mettl15 protein_coding processed_transcript MGP_CASTEiJ_T0057945.1 MGP_CASTEiJ_G0025763.1 mouse_genomes_project 2 147348414 147375020 - MGP_CASTEiJ_P0057945 Ovol2 protein_coding protein_coding MGP_CASTEiJ_T0057946.1 MGP_CASTEiJ_G0025763.1 mouse_genomes_project 2 147348414 147375471 - MGP_CASTEiJ_P0057946 Ovol2 protein_coding protein_coding MGP_CASTEiJ_T0057947.1 MGP_CASTEiJ_G0025763.1 mouse_genomes_project 2 147361101 147374650 - Ovol2 protein_coding processed_transcript MGP_CASTEiJ_T0013299.1 MGP_CASTEiJ_G0011462.1 mouse_genomes_project 2 112618492 112623255 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007246.1 MGP_CASTEiJ_G0005958.1 mouse_genomes_project 2 179968363 179978627 + Gm14616 lincRNA lincRNA MGP_CASTEiJ_T0056715.1 MGP_CASTEiJ_G0025505.1 mouse_genomes_project 2 120589691 120623041 + MGP_CASTEiJ_P0056715 Disp2 protein_coding protein_coding MGP_CASTEiJ_T0056716.1 MGP_CASTEiJ_G0025505.1 mouse_genomes_project 2 120589694 120606140 + MGP_CASTEiJ_P0056716 Disp2 protein_coding protein_coding MGP_CASTEiJ_T0056717.1 MGP_CASTEiJ_G0025505.1 mouse_genomes_project 2 120589711 120623160 + MGP_CASTEiJ_P0056717 Disp2 protein_coding protein_coding MGP_CASTEiJ_T0056718.1 MGP_CASTEiJ_G0025505.1 mouse_genomes_project 2 120589714 120601010 + MGP_CASTEiJ_P0056718 Disp2 protein_coding protein_coding MGP_CASTEiJ_T0056719.1 MGP_CASTEiJ_G0025505.1 mouse_genomes_project 2 120589731 120601009 + Disp2 protein_coding retained_intron MGP_CASTEiJ_T0053229.1 MGP_CASTEiJ_G0024687.1 mouse_genomes_project 2 24076666 24122332 - MGP_CASTEiJ_P0053229 Notch1 protein_coding protein_coding MGP_CASTEiJ_T0053230.1 MGP_CASTEiJ_G0024687.1 mouse_genomes_project 2 24080980 24081510 - Notch1 protein_coding processed_transcript MGP_CASTEiJ_T0053231.1 MGP_CASTEiJ_G0024687.1 mouse_genomes_project 2 24084230 24085546 - Notch1 protein_coding processed_transcript MGP_CASTEiJ_T0053232.1 MGP_CASTEiJ_G0024687.1 mouse_genomes_project 2 24084230 24086365 - Notch1 protein_coding processed_transcript MGP_CASTEiJ_T0053233.1 MGP_CASTEiJ_G0024687.1 mouse_genomes_project 2 24084230 24084924 - Notch1 protein_coding processed_transcript MGP_CASTEiJ_T0053234.1 MGP_CASTEiJ_G0024687.1 mouse_genomes_project 2 24084230 24085406 - Notch1 protein_coding processed_transcript MGP_CASTEiJ_T0053235.1 MGP_CASTEiJ_G0024687.1 mouse_genomes_project 2 24084230 24085128 - Notch1 protein_coding processed_transcript MGP_CASTEiJ_T0053236.1 MGP_CASTEiJ_G0024687.1 mouse_genomes_project 2 24087294 24088500 - Notch1 protein_coding processed_transcript MGP_CASTEiJ_T0053237.1 MGP_CASTEiJ_G0024687.1 mouse_genomes_project 2 24088575 24089249 - Notch1 protein_coding processed_transcript MGP_CASTEiJ_T0053238.1 MGP_CASTEiJ_G0024687.1 mouse_genomes_project 2 24090022 24135534 - MGP_CASTEiJ_P0053238 Notch1 protein_coding protein_coding MGP_CASTEiJ_T0053239.1 MGP_CASTEiJ_G0024687.1 mouse_genomes_project 2 24116665 24122334 - Notch1 protein_coding retained_intron MGP_CASTEiJ_T0055159.1 MGP_CASTEiJ_G0025021.1 mouse_genomes_project 2 71146507 71149859 - MGP_CASTEiJ_P0055159 Dlx2 protein_coding protein_coding MGP_CASTEiJ_T0055160.1 MGP_CASTEiJ_G0025021.1 mouse_genomes_project 2 71147966 71149055 - Dlx2 protein_coding retained_intron MGP_CASTEiJ_T0052904.1 MGP_CASTEiJ_G0024625.1 mouse_genomes_project 2 22766480 22768790 - MGP_CASTEiJ_P0052904 Rnf224 protein_coding protein_coding MGP_CASTEiJ_T0052905.1 MGP_CASTEiJ_G0024625.1 mouse_genomes_project 2 22766987 22768692 - MGP_CASTEiJ_P0052905 Rnf224 protein_coding protein_coding MGP_CASTEiJ_T0053084.1 MGP_CASTEiJ_G0024656.1 mouse_genomes_project 2 23165078 23173807 - MGP_CASTEiJ_P0053084 Ccdc183 protein_coding protein_coding MGP_CASTEiJ_T0053085.1 MGP_CASTEiJ_G0024656.1 mouse_genomes_project 2 23165136 23173788 - Ccdc183 protein_coding processed_transcript MGP_CASTEiJ_T0055666.1 MGP_CASTEiJ_G0025167.1 mouse_genomes_project 2 87162596 87163529 - MGP_CASTEiJ_P0055666 Olfr1086 protein_coding protein_coding MGP_CASTEiJ_T0053973.1 MGP_CASTEiJ_G0024800.1 mouse_genomes_project 2 30404664 30409483 - MGP_CASTEiJ_P0053973 1110008P14Rik protein_coding protein_coding MGP_CASTEiJ_T0053974.1 MGP_CASTEiJ_G0024800.1 mouse_genomes_project 2 30406722 30409559 - MGP_CASTEiJ_P0053974 1110008P14Rik protein_coding protein_coding MGP_CASTEiJ_T0010076.1 MGP_CASTEiJ_G0008264.1 mouse_genomes_project 2 7747280 7747389 + Mir297b miRNA miRNA MGP_CASTEiJ_T0055125.1 MGP_CASTEiJ_G0025016.1 mouse_genomes_project 2 70786675 70843585 + MGP_CASTEiJ_P0055125 Dync1i2 protein_coding protein_coding MGP_CASTEiJ_T0055126.1 MGP_CASTEiJ_G0025016.1 mouse_genomes_project 2 70786710 70843581 + MGP_CASTEiJ_P0055126 Dync1i2 protein_coding protein_coding MGP_CASTEiJ_T0055127.1 MGP_CASTEiJ_G0025016.1 mouse_genomes_project 2 70786710 70843590 + MGP_CASTEiJ_P0055127 Dync1i2 protein_coding protein_coding MGP_CASTEiJ_T0055128.1 MGP_CASTEiJ_G0025016.1 mouse_genomes_project 2 70786727 70843578 + MGP_CASTEiJ_P0055128 Dync1i2 protein_coding protein_coding MGP_CASTEiJ_T0055129.1 MGP_CASTEiJ_G0025016.1 mouse_genomes_project 2 70786775 70827730 + Dync1i2 protein_coding processed_transcript MGP_CASTEiJ_T0055130.1 MGP_CASTEiJ_G0025016.1 mouse_genomes_project 2 70786803 70843590 + MGP_CASTEiJ_P0055130 Dync1i2 protein_coding protein_coding MGP_CASTEiJ_T0055131.1 MGP_CASTEiJ_G0025016.1 mouse_genomes_project 2 70786941 70843584 + MGP_CASTEiJ_P0055131 Dync1i2 protein_coding protein_coding MGP_CASTEiJ_T0055132.1 MGP_CASTEiJ_G0025016.1 mouse_genomes_project 2 70786953 70843146 + MGP_CASTEiJ_P0055132 Dync1i2 protein_coding protein_coding MGP_CASTEiJ_T0055133.1 MGP_CASTEiJ_G0025016.1 mouse_genomes_project 2 70786961 70843590 + MGP_CASTEiJ_P0055133 Dync1i2 protein_coding protein_coding MGP_CASTEiJ_T0055134.1 MGP_CASTEiJ_G0025016.1 mouse_genomes_project 2 70786973 70807510 + Dync1i2 protein_coding retained_intron MGP_CASTEiJ_T0055135.1 MGP_CASTEiJ_G0025016.1 mouse_genomes_project 2 70815534 70840643 + Dync1i2 protein_coding retained_intron MGP_CASTEiJ_T0055136.1 MGP_CASTEiJ_G0025016.1 mouse_genomes_project 2 70840840 70843345 + Dync1i2 protein_coding retained_intron MGP_CASTEiJ_T0057306.1 MGP_CASTEiJ_G0025620.1 mouse_genomes_project 2 128787339 128817842 + MGP_CASTEiJ_P0057306 Slc27a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057307.1 MGP_CASTEiJ_G0025620.1 mouse_genomes_project 2 128794188 128831132 + MGP_CASTEiJ_P0057307 Slc27a2 protein_coding protein_coding MGP_CASTEiJ_T0057308.1 MGP_CASTEiJ_G0025620.1 mouse_genomes_project 2 128795371 128807672 + Slc27a2 protein_coding processed_transcript MGP_CASTEiJ_T0057309.1 MGP_CASTEiJ_G0025620.1 mouse_genomes_project 2 128797909 128830829 + MGP_CASTEiJ_P0057309 Slc27a2 protein_coding protein_coding MGP_CASTEiJ_T0057310.1 MGP_CASTEiJ_G0025620.1 mouse_genomes_project 2 128807746 128818416 + Slc27a2 protein_coding processed_transcript MGP_CASTEiJ_T0057451.1 MGP_CASTEiJ_G0025652.1 mouse_genomes_project 2 130798091 130799371 + MGP_CASTEiJ_P0057451 Gm29010 protein_coding protein_coding MGP_CASTEiJ_T0098718.1 MGP_CASTEiJ_G0035649.1 mouse_genomes_project 2 108487842 108488112 - Gm24885 ribozyme ribozyme MGP_CASTEiJ_T0052847.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22582418 22590944 + MGP_CASTEiJ_P0052847 Nsmf protein_coding protein_coding MGP_CASTEiJ_T0052848.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22582436 22588626 + MGP_CASTEiJ_P0052848 Nsmf protein_coding protein_coding MGP_CASTEiJ_T0052849.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22582442 22590943 + MGP_CASTEiJ_P0052849 Nsmf protein_coding protein_coding MGP_CASTEiJ_T0052850.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22582447 22590944 + MGP_CASTEiJ_P0052850 Nsmf protein_coding protein_coding MGP_CASTEiJ_T0052851.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22582466 22584960 + Nsmf protein_coding retained_intron MGP_CASTEiJ_T0052852.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22582470 22583160 + Nsmf protein_coding retained_intron MGP_CASTEiJ_T0052853.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22582476 22590944 + MGP_CASTEiJ_P0052853 Nsmf protein_coding protein_coding MGP_CASTEiJ_T0052854.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22582476 22590944 + MGP_CASTEiJ_P0052854 Nsmf protein_coding protein_coding MGP_CASTEiJ_T0052855.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22582488 22587120 + MGP_CASTEiJ_P0052855 Nsmf protein_coding protein_coding MGP_CASTEiJ_T0052856.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22582498 22590944 + MGP_CASTEiJ_P0052856 Nsmf protein_coding protein_coding MGP_CASTEiJ_T0052857.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22582519 22590944 + MGP_CASTEiJ_P0052857 Nsmf protein_coding protein_coding MGP_CASTEiJ_T0052858.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22582531 22590944 + MGP_CASTEiJ_P0052858 Nsmf protein_coding protein_coding MGP_CASTEiJ_T0052859.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22582531 22590691 + MGP_CASTEiJ_P0052859 Nsmf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052860.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22583943 22585408 + Nsmf protein_coding retained_intron MGP_CASTEiJ_T0052861.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22585207 22590944 + MGP_CASTEiJ_P0052861 Nsmf protein_coding protein_coding MGP_CASTEiJ_T0052862.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22585636 22587723 + Nsmf protein_coding retained_intron MGP_CASTEiJ_T0052863.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22588199 22589171 + Nsmf protein_coding retained_intron MGP_CASTEiJ_T0052864.1 MGP_CASTEiJ_G0024615.1 mouse_genomes_project 2 22588892 22589772 + Nsmf protein_coding retained_intron MGP_CASTEiJ_T0013101.1 MGP_CASTEiJ_G0011264.1 mouse_genomes_project 2 37587359 37588124 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007247.1 MGP_CASTEiJ_G0005959.1 mouse_genomes_project 2 182159778 182161724 + 4930591A17Rik lincRNA lincRNA MGP_CASTEiJ_T0053327.1 MGP_CASTEiJ_G0024704.1 mouse_genomes_project 2 24648548 24655114 - Slc2a6 protein_coding processed_transcript MGP_CASTEiJ_T0053328.1 MGP_CASTEiJ_G0024704.1 mouse_genomes_project 2 24648548 24655138 - Slc2a6 protein_coding processed_transcript MGP_CASTEiJ_T0053329.1 MGP_CASTEiJ_G0024704.1 mouse_genomes_project 2 24648548 24655163 - MGP_CASTEiJ_P0053329 Slc2a6 protein_coding protein_coding MGP_CASTEiJ_T0053330.1 MGP_CASTEiJ_G0024704.1 mouse_genomes_project 2 24648548 24655190 - MGP_CASTEiJ_P0053330 Slc2a6 protein_coding protein_coding MGP_CASTEiJ_T0053331.1 MGP_CASTEiJ_G0024704.1 mouse_genomes_project 2 24651265 24653183 - Slc2a6 protein_coding processed_transcript MGP_CASTEiJ_T0053332.1 MGP_CASTEiJ_G0024704.1 mouse_genomes_project 2 24653279 24655183 - MGP_CASTEiJ_P0053332 Slc2a6 protein_coding protein_coding MGP_CASTEiJ_T0007188.1 MGP_CASTEiJ_G0005907.1 mouse_genomes_project 2 161367724 161369462 - Platr27 lincRNA lincRNA MGP_CASTEiJ_T0056408.1 MGP_CASTEiJ_G0025406.1 mouse_genomes_project 2 106004608 106027591 - MGP_CASTEiJ_P0056408 Depdc7 protein_coding protein_coding MGP_CASTEiJ_T0056409.1 MGP_CASTEiJ_G0025406.1 mouse_genomes_project 2 106005425 106006008 - Depdc7 protein_coding retained_intron MGP_CASTEiJ_T0055672.1 MGP_CASTEiJ_G0025173.1 mouse_genomes_project 2 87343437 87344678 - MGP_CASTEiJ_P0055672 protein_coding protein_coding MGP_CASTEiJ_T0010211.1 MGP_CASTEiJ_G0008399.1 mouse_genomes_project 2 184474063 184474132 - Mir7006 miRNA miRNA MGP_CASTEiJ_T0054676.1 MGP_CASTEiJ_G0024936.1 mouse_genomes_project 2 52126301 52156804 + Arl6ip6 protein_coding processed_transcript MGP_CASTEiJ_T0054677.1 MGP_CASTEiJ_G0024936.1 mouse_genomes_project 2 52126663 52158488 + MGP_CASTEiJ_P0054677 Arl6ip6 protein_coding protein_coding MGP_CASTEiJ_T0004044.1 MGP_CASTEiJ_G0003582.1 mouse_genomes_project 2 172445820 172446798 + Gm14236 antisense antisense MGP_CASTEiJ_T0057637.1 MGP_CASTEiJ_G0025698.1 mouse_genomes_project 2 133522123 133525581 - MGP_CASTEiJ_P0057637 Gfra4 protein_coding protein_coding MGP_CASTEiJ_T0057638.1 MGP_CASTEiJ_G0025698.1 mouse_genomes_project 2 133522130 133523950 - Gfra4 protein_coding retained_intron MGP_CASTEiJ_T0057639.1 MGP_CASTEiJ_G0025698.1 mouse_genomes_project 2 133522131 133524004 - Gfra4 protein_coding retained_intron MGP_CASTEiJ_T0057640.1 MGP_CASTEiJ_G0025698.1 mouse_genomes_project 2 133522668 133525175 - MGP_CASTEiJ_P0057640 Gfra4 protein_coding protein_coding MGP_CASTEiJ_T0057641.1 MGP_CASTEiJ_G0025698.1 mouse_genomes_project 2 133522700 133525175 - MGP_CASTEiJ_P0057641 Gfra4 protein_coding protein_coding MGP_CASTEiJ_T0057642.1 MGP_CASTEiJ_G0025698.1 mouse_genomes_project 2 133522700 133525581 - MGP_CASTEiJ_P0057642 Gfra4 protein_coding protein_coding MGP_CASTEiJ_T0057643.1 MGP_CASTEiJ_G0025698.1 mouse_genomes_project 2 133523724 133525581 - MGP_CASTEiJ_P0057643 Gfra4 protein_coding protein_coding MGP_CASTEiJ_T0057644.1 MGP_CASTEiJ_G0025698.1 mouse_genomes_project 2 133523724 133525175 - MGP_CASTEiJ_P0057644 Gfra4 protein_coding protein_coding MGP_CASTEiJ_T0055747.1 MGP_CASTEiJ_G0025237.1 mouse_genomes_project 2 89054537 89055509 + MGP_CASTEiJ_P0055747 Olfr1178 protein_coding protein_coding MGP_CASTEiJ_T0058056.1 MGP_CASTEiJ_G0025785.1 mouse_genomes_project 2 151256697 151259766 - MGP_CASTEiJ_P0058056 Foxa2 protein_coding protein_coding MGP_CASTEiJ_T0058057.1 MGP_CASTEiJ_G0025785.1 mouse_genomes_project 2 151256697 151260787 - MGP_CASTEiJ_P0058057 Foxa2 protein_coding protein_coding MGP_CASTEiJ_T0058058.1 MGP_CASTEiJ_G0025785.1 mouse_genomes_project 2 151257362 151260714 - MGP_CASTEiJ_P0058058 Foxa2 protein_coding protein_coding MGP_CASTEiJ_T0058059.1 MGP_CASTEiJ_G0025785.1 mouse_genomes_project 2 151258060 151259282 - Foxa2 protein_coding processed_transcript MGP_CASTEiJ_T0056698.1 MGP_CASTEiJ_G0025500.1 mouse_genomes_project 2 120471116 120507195 + MGP_CASTEiJ_P0056698 Pak6 protein_coding protein_coding MGP_CASTEiJ_T0056699.1 MGP_CASTEiJ_G0025500.1 mouse_genomes_project 2 120471575 120472766 + Pak6 protein_coding retained_intron MGP_CASTEiJ_T0056700.1 MGP_CASTEiJ_G0025500.1 mouse_genomes_project 2 120471877 120486914 + Pak6 protein_coding processed_transcript MGP_CASTEiJ_T0056701.1 MGP_CASTEiJ_G0025500.1 mouse_genomes_project 2 120486372 120507193 + MGP_CASTEiJ_P0056701 Pak6 protein_coding protein_coding MGP_CASTEiJ_T0056702.1 MGP_CASTEiJ_G0025500.1 mouse_genomes_project 2 120486406 120506405 + Pak6 protein_coding retained_intron MGP_CASTEiJ_T0058147.1 MGP_CASTEiJ_G0025818.1 mouse_genomes_project 2 154748938 154766766 + MGP_CASTEiJ_P0058147 protein_coding protein_coding MGP_CASTEiJ_T0058148.1 MGP_CASTEiJ_G0025818.1 mouse_genomes_project 2 154748945 154761801 + protein_coding retained_intron MGP_CASTEiJ_T0058149.1 MGP_CASTEiJ_G0025818.1 mouse_genomes_project 2 154749044 154755932 + protein_coding retained_intron MGP_CASTEiJ_T0058150.1 MGP_CASTEiJ_G0025818.1 mouse_genomes_project 2 154749047 154766761 + MGP_CASTEiJ_P0058150 protein_coding protein_coding MGP_CASTEiJ_T0058151.1 MGP_CASTEiJ_G0025818.1 mouse_genomes_project 2 154749058 154766870 + MGP_CASTEiJ_P0058151 protein_coding protein_coding MGP_CASTEiJ_T0058152.1 MGP_CASTEiJ_G0025818.1 mouse_genomes_project 2 154749065 154758118 + protein_coding retained_intron MGP_CASTEiJ_T0058153.1 MGP_CASTEiJ_G0025818.1 mouse_genomes_project 2 154757021 154765151 + protein_coding processed_transcript MGP_CASTEiJ_T0058154.1 MGP_CASTEiJ_G0025818.1 mouse_genomes_project 2 154757674 154766445 + protein_coding retained_intron MGP_CASTEiJ_T0058155.1 MGP_CASTEiJ_G0025818.1 mouse_genomes_project 2 154758431 154765181 + protein_coding retained_intron MGP_CASTEiJ_T0058156.1 MGP_CASTEiJ_G0025818.1 mouse_genomes_project 2 154764591 154766718 + protein_coding retained_intron MGP_CASTEiJ_T0001045.1 MGP_CASTEiJ_G0000981.1 mouse_genomes_project 2 104549023 104552427 - TEC TEC MGP_CASTEiJ_T0057208.1 MGP_CASTEiJ_G0025598.1 mouse_genomes_project 2 124725161 124728910 + MGP_CASTEiJ_P0057208 AA467197 protein_coding protein_coding MGP_CASTEiJ_T0057209.1 MGP_CASTEiJ_G0025598.1 mouse_genomes_project 2 124726020 124730079 + MGP_CASTEiJ_P0057209 AA467197 protein_coding protein_coding MGP_CASTEiJ_T0057210.1 MGP_CASTEiJ_G0025598.1 mouse_genomes_project 2 124726040 124729658 + MGP_CASTEiJ_P0057210 AA467197 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057211.1 MGP_CASTEiJ_G0025598.1 mouse_genomes_project 2 124726085 124729124 + AA467197 protein_coding processed_transcript MGP_CASTEiJ_T0057212.1 MGP_CASTEiJ_G0025598.1 mouse_genomes_project 2 124726085 124729266 + MGP_CASTEiJ_P0057212 AA467197 protein_coding protein_coding MGP_CASTEiJ_T0058730.1 MGP_CASTEiJ_G0025948.1 mouse_genomes_project 2 160546447 160547788 - MGP_CASTEiJ_P0058730 4930518I15Rik protein_coding protein_coding MGP_CASTEiJ_T0058116.1 MGP_CASTEiJ_G0025811.1 mouse_genomes_project 2 154001128 154046292 + MGP_CASTEiJ_P0058116 Pygb protein_coding protein_coding MGP_CASTEiJ_T0058117.1 MGP_CASTEiJ_G0025811.1 mouse_genomes_project 2 154001162 154056087 + MGP_CASTEiJ_P0058117 Pygb protein_coding unknown_likely_coding MGP_CASTEiJ_T0058118.1 MGP_CASTEiJ_G0025811.1 mouse_genomes_project 2 154003385 154028900 + Pygb protein_coding processed_transcript MGP_CASTEiJ_T0058119.1 MGP_CASTEiJ_G0025811.1 mouse_genomes_project 2 154030220 154032649 + Pygb protein_coding retained_intron MGP_CASTEiJ_T0058120.1 MGP_CASTEiJ_G0025811.1 mouse_genomes_project 2 154038169 154043019 + Pygb protein_coding retained_intron MGP_CASTEiJ_T0058121.1 MGP_CASTEiJ_G0025811.1 mouse_genomes_project 2 154042933 154045167 + Pygb protein_coding retained_intron MGP_CASTEiJ_T0055808.1 MGP_CASTEiJ_G0025288.1 mouse_genomes_project 2 90401555 90402500 - MGP_CASTEiJ_P0055808 Olfr1246 protein_coding protein_coding MGP_CASTEiJ_T0052822.1 MGP_CASTEiJ_G0024612.1 mouse_genomes_project 2 22484680 22494853 + MGP_CASTEiJ_P0052822 Dph7 protein_coding protein_coding MGP_CASTEiJ_T0052823.1 MGP_CASTEiJ_G0024612.1 mouse_genomes_project 2 22484702 22494851 + MGP_CASTEiJ_P0052823 Dph7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052824.1 MGP_CASTEiJ_G0024612.1 mouse_genomes_project 2 22484703 22491573 + MGP_CASTEiJ_P0052824 Dph7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052825.1 MGP_CASTEiJ_G0024612.1 mouse_genomes_project 2 22484721 22489229 + MGP_CASTEiJ_P0052825 Dph7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052826.1 MGP_CASTEiJ_G0024612.1 mouse_genomes_project 2 22484732 22489184 + MGP_CASTEiJ_P0052826 Dph7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052827.1 MGP_CASTEiJ_G0024612.1 mouse_genomes_project 2 22484746 22494853 + Dph7 protein_coding retained_intron MGP_CASTEiJ_T0052828.1 MGP_CASTEiJ_G0024612.1 mouse_genomes_project 2 22484753 22492322 + MGP_CASTEiJ_P0052828 Dph7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013144.1 MGP_CASTEiJ_G0011307.1 mouse_genomes_project 2 56134570 56134977 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053215.1 MGP_CASTEiJ_G0024685.1 mouse_genomes_project 2 24007025 24010552 - MGP_CASTEiJ_P0053215 Inpp5e protein_coding protein_coding MGP_CASTEiJ_T0053216.1 MGP_CASTEiJ_G0024685.1 mouse_genomes_project 2 24007563 24021702 - Inpp5e protein_coding processed_transcript MGP_CASTEiJ_T0053217.1 MGP_CASTEiJ_G0024685.1 mouse_genomes_project 2 24007642 24021105 - MGP_CASTEiJ_P0053217 Inpp5e protein_coding protein_coding MGP_CASTEiJ_T0053218.1 MGP_CASTEiJ_G0024685.1 mouse_genomes_project 2 24007806 24021721 - Inpp5e protein_coding processed_transcript MGP_CASTEiJ_T0053219.1 MGP_CASTEiJ_G0024685.1 mouse_genomes_project 2 24010340 24011557 - Inpp5e protein_coding processed_transcript MGP_CASTEiJ_T0053220.1 MGP_CASTEiJ_G0024685.1 mouse_genomes_project 2 24010493 24013287 - MGP_CASTEiJ_P0053220 Inpp5e protein_coding protein_coding MGP_CASTEiJ_T0013020.1 MGP_CASTEiJ_G0011183.1 mouse_genomes_project 2 8146615 8147426 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059327.1 MGP_CASTEiJ_G0026084.1 mouse_genomes_project 2 171424637 171427361 + protein_coding antisense MGP_CASTEiJ_T0059328.1 MGP_CASTEiJ_G0026084.1 mouse_genomes_project 2 171424637 171427360 + MGP_CASTEiJ_P0059328 protein_coding protein_coding MGP_CASTEiJ_T0059329.1 MGP_CASTEiJ_G0026084.1 mouse_genomes_project 2 171424638 171427073 + protein_coding retained_intron MGP_CASTEiJ_T0059330.1 MGP_CASTEiJ_G0026084.1 mouse_genomes_project 2 171424924 171426881 + protein_coding retained_intron MGP_CASTEiJ_T0059331.1 MGP_CASTEiJ_G0026084.1 mouse_genomes_project 2 171424926 171427221 + protein_coding retained_intron MGP_CASTEiJ_T0059332.1 MGP_CASTEiJ_G0026084.1 mouse_genomes_project 2 171425353 171427361 + protein_coding retained_intron MGP_CASTEiJ_T0055623.1 MGP_CASTEiJ_G0025126.1 mouse_genomes_project 2 86090940 86091885 + MGP_CASTEiJ_P0055623 Olfr1009 protein_coding protein_coding MGP_CASTEiJ_T0054376.1 MGP_CASTEiJ_G0024886.1 mouse_genomes_project 2 35385038 35385968 + MGP_CASTEiJ_P0054376 Olfr366 protein_coding protein_coding MGP_CASTEiJ_T0052589.1 MGP_CASTEiJ_G0024571.1 mouse_genomes_project 2 15627247 15652802 - MGP_CASTEiJ_P0052589 Dnajc1 protein_coding protein_coding MGP_CASTEiJ_T0052590.1 MGP_CASTEiJ_G0024571.1 mouse_genomes_project 2 15637949 15840729 - MGP_CASTEiJ_P0052590 Dnajc1 protein_coding protein_coding MGP_CASTEiJ_T0052591.1 MGP_CASTEiJ_G0024571.1 mouse_genomes_project 2 15640824 15650151 - Dnajc1 protein_coding processed_transcript MGP_CASTEiJ_T0052592.1 MGP_CASTEiJ_G0024571.1 mouse_genomes_project 2 15646996 15840748 - MGP_CASTEiJ_P0052592 Dnajc1 protein_coding protein_coding MGP_CASTEiJ_T0052593.1 MGP_CASTEiJ_G0024571.1 mouse_genomes_project 2 15650372 15840340 - MGP_CASTEiJ_P0052593 Dnajc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052594.1 MGP_CASTEiJ_G0024571.1 mouse_genomes_project 2 15650372 15840560 - MGP_CASTEiJ_P0052594 Dnajc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052595.1 MGP_CASTEiJ_G0024571.1 mouse_genomes_project 2 15650392 15840341 - MGP_CASTEiJ_P0052595 Dnajc1 protein_coding protein_coding MGP_CASTEiJ_T0052596.1 MGP_CASTEiJ_G0024571.1 mouse_genomes_project 2 15652775 15749808 - MGP_CASTEiJ_P0052596 Dnajc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052597.1 MGP_CASTEiJ_G0024571.1 mouse_genomes_project 2 15749429 15753048 - Dnajc1 protein_coding retained_intron MGP_CASTEiJ_T0052598.1 MGP_CASTEiJ_G0024571.1 mouse_genomes_project 2 15751375 15840742 - Dnajc1 protein_coding processed_transcript MGP_CASTEiJ_T0052599.1 MGP_CASTEiJ_G0024571.1 mouse_genomes_project 2 15760906 15840748 - Dnajc1 protein_coding retained_intron MGP_CASTEiJ_T0053159.1 MGP_CASTEiJ_G0024677.1 mouse_genomes_project 2 23851368 23907524 - MGP_CASTEiJ_P0053159 Ccdc187 protein_coding unknown_likely_coding MGP_CASTEiJ_T0053161.1 MGP_CASTEiJ_G0024677.1 mouse_genomes_project 2 23884071 23907698 - MGP_CASTEiJ_P0053161 Ccdc187 protein_coding protein_coding MGP_CASTEiJ_T0053162.1 MGP_CASTEiJ_G0024677.1 mouse_genomes_project 2 23893471 23900173 - MGP_CASTEiJ_P0053162 Ccdc187 protein_coding protein_coding MGP_CASTEiJ_T0013431.1 MGP_CASTEiJ_G0011594.1 mouse_genomes_project 2 166802727 166803060 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055676.1 MGP_CASTEiJ_G0025177.1 mouse_genomes_project 2 87482262 87483195 - MGP_CASTEiJ_P0055676 Olfr1101 protein_coding protein_coding MGP_CASTEiJ_T0013069.1 MGP_CASTEiJ_G0011232.1 mouse_genomes_project 2 23581775 23582408 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004015.1 MGP_CASTEiJ_G0003561.1 mouse_genomes_project 2 161871801 161896968 - 2010009K17Rik antisense antisense MGP_CASTEiJ_T0013032.1 MGP_CASTEiJ_G0011195.1 mouse_genomes_project 2 12511677 12514491 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058325.1 MGP_CASTEiJ_G0025871.1 mouse_genomes_project 2 156656467 156706279 + MGP_CASTEiJ_P0058325 Kif3b protein_coding protein_coding MGP_CASTEiJ_T0007167.1 MGP_CASTEiJ_G0005891.1 mouse_genomes_project 2 152976491 153021898 - Gm14133 lincRNA lincRNA MGP_CASTEiJ_T0056540.1 MGP_CASTEiJ_G0025442.1 mouse_genomes_project 2 112781242 112782296 + MGP_CASTEiJ_P0056540 protein_coding protein_coding MGP_CASTEiJ_T0003859.1 MGP_CASTEiJ_G0003450.1 mouse_genomes_project 2 64413642 64414562 + Gm13594 antisense antisense MGP_CASTEiJ_T0004027.1 MGP_CASTEiJ_G0003570.1 mouse_genomes_project 2 167735165 167736110 + 0610039K10Rik antisense antisense MGP_CASTEiJ_T0004028.1 MGP_CASTEiJ_G0003570.1 mouse_genomes_project 2 167735165 167736111 + 0610039K10Rik antisense antisense MGP_CASTEiJ_T0003827.1 MGP_CASTEiJ_G0003427.1 mouse_genomes_project 2 31278134 31282182 + Gm13528 antisense antisense MGP_CASTEiJ_T0057117.1 MGP_CASTEiJ_G0025575.1 mouse_genomes_project 2 123409168 123428585 - MGP_CASTEiJ_P0057117 Serinc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057125.1 MGP_CASTEiJ_G0025575.1 mouse_genomes_project 2 123423906 123429536 - MGP_CASTEiJ_P0057125 Serinc4 protein_coding protein_coding MGP_CASTEiJ_T0057126.1 MGP_CASTEiJ_G0025575.1 mouse_genomes_project 2 123423906 123429448 - MGP_CASTEiJ_P0057126 Serinc4 protein_coding protein_coding MGP_CASTEiJ_T0057127.1 MGP_CASTEiJ_G0025575.1 mouse_genomes_project 2 123423918 123428585 - MGP_CASTEiJ_P0057127 Serinc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057128.1 MGP_CASTEiJ_G0025575.1 mouse_genomes_project 2 123423976 123428579 - MGP_CASTEiJ_P0057128 Serinc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057129.1 MGP_CASTEiJ_G0025575.1 mouse_genomes_project 2 123424932 123426483 - Serinc4 protein_coding retained_intron MGP_CASTEiJ_T0100933.1 MGP_CASTEiJ_G0037846.1 mouse_genomes_project 2 171426774 171426864 + Snord12 snoRNA snoRNA MGP_CASTEiJ_T0017030.1 MGP_CASTEiJ_G0014734.1 mouse_genomes_project 2 56099413 56107256 + 4930555B11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0055316.1 MGP_CASTEiJ_G0025057.1 mouse_genomes_project 2 76288403 76294929 - MGP_CASTEiJ_P0055316 Cyct protein_coding protein_coding MGP_CASTEiJ_T0099627.1 MGP_CASTEiJ_G0036540.1 mouse_genomes_project 2 26325488 26325592 + Gm22675 snRNA snRNA MGP_CASTEiJ_T0053602.1 MGP_CASTEiJ_G0024751.1 mouse_genomes_project 2 27916222 27947212 - MGP_CASTEiJ_P0053602 Zer1 protein_coding protein_coding MGP_CASTEiJ_T0053603.1 MGP_CASTEiJ_G0024751.1 mouse_genomes_project 2 27916222 27947065 - MGP_CASTEiJ_P0053603 Zer1 protein_coding protein_coding MGP_CASTEiJ_T0053604.1 MGP_CASTEiJ_G0024751.1 mouse_genomes_project 2 27920995 27923022 - Zer1 protein_coding retained_intron MGP_CASTEiJ_T0053605.1 MGP_CASTEiJ_G0024751.1 mouse_genomes_project 2 27921707 27923991 - Zer1 protein_coding retained_intron MGP_CASTEiJ_T0053606.1 MGP_CASTEiJ_G0024751.1 mouse_genomes_project 2 27926546 27947215 - Zer1 protein_coding retained_intron MGP_CASTEiJ_T0053607.1 MGP_CASTEiJ_G0024751.1 mouse_genomes_project 2 27926801 27947209 - Zer1 protein_coding retained_intron MGP_CASTEiJ_T0053608.1 MGP_CASTEiJ_G0024751.1 mouse_genomes_project 2 27928068 27932025 - Zer1 protein_coding retained_intron MGP_CASTEiJ_T0053609.1 MGP_CASTEiJ_G0024751.1 mouse_genomes_project 2 27928445 27928911 - Zer1 protein_coding processed_transcript MGP_CASTEiJ_T0053610.1 MGP_CASTEiJ_G0024751.1 mouse_genomes_project 2 27928783 27929812 - Zer1 protein_coding retained_intron MGP_CASTEiJ_T0059020.1 MGP_CASTEiJ_G0026012.1 mouse_genomes_project 2 168127463 168154693 + MGP_CASTEiJ_P0059020 Pabpc1l protein_coding protein_coding MGP_CASTEiJ_T0059021.1 MGP_CASTEiJ_G0026012.1 mouse_genomes_project 2 168134568 168145854 + Pabpc1l protein_coding processed_transcript MGP_CASTEiJ_T0059022.1 MGP_CASTEiJ_G0026012.1 mouse_genomes_project 2 168140597 168146081 + Pabpc1l protein_coding processed_transcript MGP_CASTEiJ_T0059023.1 MGP_CASTEiJ_G0026012.1 mouse_genomes_project 2 168151308 168154313 + Pabpc1l protein_coding processed_transcript MGP_CASTEiJ_T0059024.1 MGP_CASTEiJ_G0026012.1 mouse_genomes_project 2 168151732 168154693 + Pabpc1l protein_coding processed_transcript MGP_CASTEiJ_T0013350.1 MGP_CASTEiJ_G0011513.1 mouse_genomes_project 2 135280308 135280895 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013456.1 MGP_CASTEiJ_G0011619.1 mouse_genomes_project 2 182771944 182772353 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013420.1 MGP_CASTEiJ_G0011583.1 mouse_genomes_project 2 160530044 160539468 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010207.1 MGP_CASTEiJ_G0008395.1 mouse_genomes_project 2 183055170 183055246 + Mir3091 miRNA miRNA MGP_CASTEiJ_T0055842.1 MGP_CASTEiJ_G0025309.1 mouse_genomes_project 2 90915426 90942421 - MGP_CASTEiJ_P0055842 protein_coding protein_coding MGP_CASTEiJ_T0100906.1 MGP_CASTEiJ_G0037819.1 mouse_genomes_project 2 132699281 132699349 + Snord110 snoRNA snoRNA MGP_CASTEiJ_T0055638.1 MGP_CASTEiJ_G0025140.1 mouse_genomes_project 2 86377641 86378891 + MGP_CASTEiJ_P0055638 protein_coding protein_coding MGP_CASTEiJ_T0058398.1 MGP_CASTEiJ_G0025893.1 mouse_genomes_project 2 157883576 157917792 - MGP_CASTEiJ_P0058398 Snta1 protein_coding protein_coding MGP_CASTEiJ_T0058399.1 MGP_CASTEiJ_G0025893.1 mouse_genomes_project 2 157883576 157917774 - MGP_CASTEiJ_P0058399 Snta1 protein_coding protein_coding MGP_CASTEiJ_T0058400.1 MGP_CASTEiJ_G0025893.1 mouse_genomes_project 2 157908904 157917673 - Snta1 protein_coding processed_transcript MGP_CASTEiJ_T0056612.1 MGP_CASTEiJ_G0025482.1 mouse_genomes_project 2 115583338 115587356 - MGP_CASTEiJ_P0056612 Gjd2 protein_coding protein_coding MGP_CASTEiJ_T0100899.1 MGP_CASTEiJ_G0037812.1 mouse_genomes_project 2 114001924 114002053 + Gm22676 snoRNA snoRNA MGP_CASTEiJ_T0052250.1 MGP_CASTEiJ_G0024518.1 mouse_genomes_project 2 2360835 2791024 - MGP_CASTEiJ_P0052250 Camk1d protein_coding protein_coding MGP_CASTEiJ_T0052251.1 MGP_CASTEiJ_G0024518.1 mouse_genomes_project 2 2366289 2756341 - MGP_CASTEiJ_P0052251 Camk1d protein_coding protein_coding MGP_CASTEiJ_T0052252.1 MGP_CASTEiJ_G0024518.1 mouse_genomes_project 2 2514874 2756695 - Camk1d protein_coding processed_transcript MGP_CASTEiJ_T0052253.1 MGP_CASTEiJ_G0024518.1 mouse_genomes_project 2 2640305 2791012 - Camk1d protein_coding processed_transcript MGP_CASTEiJ_T0052349.1 MGP_CASTEiJ_G0024534.1 mouse_genomes_project 2 7307534 7317631 + Kin protein_coding processed_transcript MGP_CASTEiJ_T0052350.1 MGP_CASTEiJ_G0024534.1 mouse_genomes_project 2 7307565 7318616 + MGP_CASTEiJ_P0052350 Kin protein_coding protein_coding MGP_CASTEiJ_T0052351.1 MGP_CASTEiJ_G0024534.1 mouse_genomes_project 2 7316115 7317991 + Kin protein_coding processed_transcript MGP_CASTEiJ_T0055658.1 MGP_CASTEiJ_G0025160.1 mouse_genomes_project 2 86876812 86877763 - MGP_CASTEiJ_P0055658 Olfr1058 protein_coding protein_coding MGP_CASTEiJ_T0004014.1 MGP_CASTEiJ_G0003560.1 mouse_genomes_project 2 161313203 161314408 - Gm14286 antisense antisense MGP_CASTEiJ_T0013447.1 MGP_CASTEiJ_G0011610.1 mouse_genomes_project 2 175749260 175750021 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056891.1 MGP_CASTEiJ_G0025544.1 mouse_genomes_project 2 122162202 122186284 - MGP_CASTEiJ_P0056891 Pla2g4d protein_coding protein_coding MGP_CASTEiJ_T0052695.1 MGP_CASTEiJ_G0024589.1 mouse_genomes_project 2 20194236 20305668 + MGP_CASTEiJ_P0052695 Apbb1ip protein_coding protein_coding MGP_CASTEiJ_T0052696.1 MGP_CASTEiJ_G0024589.1 mouse_genomes_project 2 20197367 20265965 + Apbb1ip protein_coding processed_transcript MGP_CASTEiJ_T0052697.1 MGP_CASTEiJ_G0024589.1 mouse_genomes_project 2 20197663 20282086 + Apbb1ip protein_coding processed_transcript MGP_CASTEiJ_T0052698.1 MGP_CASTEiJ_G0024589.1 mouse_genomes_project 2 20197718 20257151 + Apbb1ip protein_coding retained_intron MGP_CASTEiJ_T0055932.1 MGP_CASTEiJ_G0025327.1 mouse_genomes_project 2 91944731 91978168 + MGP_CASTEiJ_P0055932 Spi1 protein_coding protein_coding MGP_CASTEiJ_T0055933.1 MGP_CASTEiJ_G0025327.1 mouse_genomes_project 2 91944749 91952624 + Spi1 protein_coding processed_transcript MGP_CASTEiJ_T0055934.1 MGP_CASTEiJ_G0025327.1 mouse_genomes_project 2 91958574 91979558 + MGP_CASTEiJ_P0055934 Spi1 protein_coding protein_coding MGP_CASTEiJ_T0055935.1 MGP_CASTEiJ_G0025327.1 mouse_genomes_project 2 91959258 91977117 + MGP_CASTEiJ_P0055935 Spi1 protein_coding protein_coding MGP_CASTEiJ_T0056256.1 MGP_CASTEiJ_G0025377.1 mouse_genomes_project 2 102763094 102770977 + Traf6 protein_coding processed_transcript MGP_CASTEiJ_T0056257.1 MGP_CASTEiJ_G0025377.1 mouse_genomes_project 2 102763105 102787457 + MGP_CASTEiJ_P0056257 Traf6 protein_coding protein_coding MGP_CASTEiJ_T0056258.1 MGP_CASTEiJ_G0025377.1 mouse_genomes_project 2 102768960 102775948 + Traf6 protein_coding processed_transcript MGP_CASTEiJ_T0052912.1 MGP_CASTEiJ_G0024628.1 mouse_genomes_project 2 22777020 22787775 - MGP_CASTEiJ_P0052912 Ndor1 protein_coding protein_coding MGP_CASTEiJ_T0052913.1 MGP_CASTEiJ_G0024628.1 mouse_genomes_project 2 22777064 22787778 - MGP_CASTEiJ_P0052913 Ndor1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052914.1 MGP_CASTEiJ_G0024628.1 mouse_genomes_project 2 22777768 22780178 - Ndor1 protein_coding processed_transcript MGP_CASTEiJ_T0052915.1 MGP_CASTEiJ_G0024628.1 mouse_genomes_project 2 22779420 22787801 - MGP_CASTEiJ_P0052915 Ndor1 protein_coding protein_coding MGP_CASTEiJ_T0052916.1 MGP_CASTEiJ_G0024628.1 mouse_genomes_project 2 22779619 22787778 - MGP_CASTEiJ_P0052916 Ndor1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052917.1 MGP_CASTEiJ_G0024628.1 mouse_genomes_project 2 22779778 22780663 - Ndor1 protein_coding retained_intron MGP_CASTEiJ_T0052918.1 MGP_CASTEiJ_G0024628.1 mouse_genomes_project 2 22781663 22787738 - MGP_CASTEiJ_P0052918 Ndor1 protein_coding protein_coding MGP_CASTEiJ_T0052919.1 MGP_CASTEiJ_G0024628.1 mouse_genomes_project 2 22781691 22782534 - Ndor1 protein_coding retained_intron MGP_CASTEiJ_T0052920.1 MGP_CASTEiJ_G0024628.1 mouse_genomes_project 2 22782315 22787808 - MGP_CASTEiJ_P0052920 Ndor1 protein_coding protein_coding MGP_CASTEiJ_T0052921.1 MGP_CASTEiJ_G0024628.1 mouse_genomes_project 2 22782366 22787760 - Ndor1 protein_coding processed_transcript MGP_CASTEiJ_T0052922.1 MGP_CASTEiJ_G0024628.1 mouse_genomes_project 2 22783676 22787653 - Ndor1 protein_coding retained_intron MGP_CASTEiJ_T0052923.1 MGP_CASTEiJ_G0024628.1 mouse_genomes_project 2 22783939 22788406 - MGP_CASTEiJ_P0052923 Ndor1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006938.1 MGP_CASTEiJ_G0005709.1 mouse_genomes_project 2 1118783 1124930 + Gm13189 lincRNA lincRNA MGP_CASTEiJ_T0101757.1 MGP_CASTEiJ_G0026135.1 mouse_genomes_project 2 178601699 178685758 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101758.1 MGP_CASTEiJ_G0026135.1 mouse_genomes_project 2 178602818 178685758 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101759.1 MGP_CASTEiJ_G0026135.1 mouse_genomes_project 2 178603579 178655104 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0101760.1 MGP_CASTEiJ_G0026135.1 mouse_genomes_project 2 178607277 178685758 - transcribed_unprocessed_pseudogene retained_intron MGP_CASTEiJ_T0101761.1 MGP_CASTEiJ_G0026135.1 mouse_genomes_project 2 178608225 178614619 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101762.1 MGP_CASTEiJ_G0026135.1 mouse_genomes_project 2 178608952 178615170 - transcribed_unprocessed_pseudogene retained_intron MGP_CASTEiJ_T0101763.1 MGP_CASTEiJ_G0026135.1 mouse_genomes_project 2 178619964 178685758 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101764.1 MGP_CASTEiJ_G0026135.1 mouse_genomes_project 2 178619964 178685587 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101765.1 MGP_CASTEiJ_G0026135.1 mouse_genomes_project 2 178620990 178634531 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101766.1 MGP_CASTEiJ_G0026135.1 mouse_genomes_project 2 178621004 178685856 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101767.1 MGP_CASTEiJ_G0026135.1 mouse_genomes_project 2 178634192 178685723 - transcribed_unprocessed_pseudogene retained_intron MGP_CASTEiJ_T0101768.1 MGP_CASTEiJ_G0026135.1 mouse_genomes_project 2 178640712 178685754 - transcribed_unprocessed_pseudogene retained_intron MGP_CASTEiJ_T0100882.1 MGP_CASTEiJ_G0037795.1 mouse_genomes_project 2 64568616 64568769 - Gm24138 snoRNA snoRNA MGP_CASTEiJ_T0057137.1 MGP_CASTEiJ_G0025580.1 mouse_genomes_project 2 123549291 123783674 - MGP_CASTEiJ_P0057137 Frmd5 protein_coding protein_coding MGP_CASTEiJ_T0057138.1 MGP_CASTEiJ_G0025580.1 mouse_genomes_project 2 123549291 123836330 - MGP_CASTEiJ_P0057138 Frmd5 protein_coding protein_coding MGP_CASTEiJ_T0057139.1 MGP_CASTEiJ_G0025580.1 mouse_genomes_project 2 123549291 123594436 - MGP_CASTEiJ_P0057139 Frmd5 protein_coding protein_coding MGP_CASTEiJ_T0057140.1 MGP_CASTEiJ_G0025580.1 mouse_genomes_project 2 123551510 123559552 - MGP_CASTEiJ_P0057140 Frmd5 protein_coding protein_coding MGP_CASTEiJ_T0057141.1 MGP_CASTEiJ_G0025580.1 mouse_genomes_project 2 123552068 123783674 - MGP_CASTEiJ_P0057141 Frmd5 protein_coding protein_coding MGP_CASTEiJ_T0057142.1 MGP_CASTEiJ_G0025580.1 mouse_genomes_project 2 123552070 123836266 - MGP_CASTEiJ_P0057142 Frmd5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057143.1 MGP_CASTEiJ_G0025580.1 mouse_genomes_project 2 123552071 123836235 - MGP_CASTEiJ_P0057143 Frmd5 protein_coding protein_coding MGP_CASTEiJ_T0057144.1 MGP_CASTEiJ_G0025580.1 mouse_genomes_project 2 123552419 123836074 - MGP_CASTEiJ_P0057144 Frmd5 protein_coding protein_coding MGP_CASTEiJ_T0057145.1 MGP_CASTEiJ_G0025580.1 mouse_genomes_project 2 123552812 123563453 - Frmd5 protein_coding processed_transcript MGP_CASTEiJ_T0057146.1 MGP_CASTEiJ_G0025580.1 mouse_genomes_project 2 123566065 123836300 - Frmd5 protein_coding retained_intron MGP_CASTEiJ_T0057147.1 MGP_CASTEiJ_G0025580.1 mouse_genomes_project 2 123573612 123836115 - MGP_CASTEiJ_P0057147 Frmd5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057148.1 MGP_CASTEiJ_G0025580.1 mouse_genomes_project 2 123573664 123592009 - Frmd5 protein_coding processed_transcript MGP_CASTEiJ_T0017105.1 MGP_CASTEiJ_G0014777.1 mouse_genomes_project 2 124707338 124709471 + processed_transcript processed_transcript MGP_CASTEiJ_T0017106.1 MGP_CASTEiJ_G0014777.1 mouse_genomes_project 2 124707359 124721128 + processed_transcript processed_transcript MGP_CASTEiJ_T0054837.1 MGP_CASTEiJ_G0024962.1 mouse_genomes_project 2 60796661 60891193 + MGP_CASTEiJ_P0054837 Psmd14 protein_coding protein_coding MGP_CASTEiJ_T0054838.1 MGP_CASTEiJ_G0024962.1 mouse_genomes_project 2 60796709 60807356 + Psmd14 protein_coding processed_transcript MGP_CASTEiJ_T0054839.1 MGP_CASTEiJ_G0024962.1 mouse_genomes_project 2 60796727 60852643 + Psmd14 protein_coding processed_transcript MGP_CASTEiJ_T0054840.1 MGP_CASTEiJ_G0024962.1 mouse_genomes_project 2 60796747 60811977 + Psmd14 protein_coding processed_transcript MGP_CASTEiJ_T0054841.1 MGP_CASTEiJ_G0024962.1 mouse_genomes_project 2 60796758 60848286 + Psmd14 protein_coding processed_transcript MGP_CASTEiJ_T0054842.1 MGP_CASTEiJ_G0024962.1 mouse_genomes_project 2 60853122 60890870 + Psmd14 protein_coding processed_transcript MGP_CASTEiJ_T0054843.1 MGP_CASTEiJ_G0024962.1 mouse_genomes_project 2 60865050 60890891 + Psmd14 protein_coding processed_transcript MGP_CASTEiJ_T0013024.1 MGP_CASTEiJ_G0011187.1 mouse_genomes_project 2 8703375 8704375 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001011.1 MGP_CASTEiJ_G0000947.1 mouse_genomes_project 2 12438398 12441162 + TEC TEC MGP_CASTEiJ_T0052476.1 MGP_CASTEiJ_G0024549.1 mouse_genomes_project 2 10291834 10300162 - MGP_CASTEiJ_P0052476 C1ql3 protein_coding protein_coding MGP_CASTEiJ_T0054099.1 MGP_CASTEiJ_G0024823.1 mouse_genomes_project 2 31005362 31043465 - MGP_CASTEiJ_P0054099 Lrsam1 protein_coding protein_coding MGP_CASTEiJ_T0054100.1 MGP_CASTEiJ_G0024823.1 mouse_genomes_project 2 31005366 31045299 - MGP_CASTEiJ_P0054100 Lrsam1 protein_coding protein_coding MGP_CASTEiJ_T0054101.1 MGP_CASTEiJ_G0024823.1 mouse_genomes_project 2 31009737 31021942 - MGP_CASTEiJ_P0054101 Lrsam1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054102.1 MGP_CASTEiJ_G0024823.1 mouse_genomes_project 2 31015997 31018933 - Lrsam1 protein_coding retained_intron MGP_CASTEiJ_T0054103.1 MGP_CASTEiJ_G0024823.1 mouse_genomes_project 2 31036420 31045284 - MGP_CASTEiJ_P0054103 Lrsam1 protein_coding protein_coding MGP_CASTEiJ_T0054104.1 MGP_CASTEiJ_G0024823.1 mouse_genomes_project 2 31036422 31045277 - MGP_CASTEiJ_P0054104 Lrsam1 protein_coding protein_coding MGP_CASTEiJ_T0054105.1 MGP_CASTEiJ_G0024823.1 mouse_genomes_project 2 31036435 31042116 - MGP_CASTEiJ_P0054105 Lrsam1 protein_coding protein_coding MGP_CASTEiJ_T0054106.1 MGP_CASTEiJ_G0024823.1 mouse_genomes_project 2 31036439 31043461 - MGP_CASTEiJ_P0054106 Lrsam1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054107.1 MGP_CASTEiJ_G0024823.1 mouse_genomes_project 2 31039457 31045278 - MGP_CASTEiJ_P0054107 Lrsam1 protein_coding protein_coding MGP_CASTEiJ_T0054108.1 MGP_CASTEiJ_G0024823.1 mouse_genomes_project 2 31039464 31045278 - MGP_CASTEiJ_P0054108 Lrsam1 protein_coding protein_coding MGP_CASTEiJ_T0054109.1 MGP_CASTEiJ_G0024823.1 mouse_genomes_project 2 31042456 31045285 - Lrsam1 protein_coding processed_transcript MGP_CASTEiJ_T0054110.1 MGP_CASTEiJ_G0024823.1 mouse_genomes_project 2 31043283 31045291 - Lrsam1 protein_coding processed_transcript MGP_CASTEiJ_T0003972.1 MGP_CASTEiJ_G0003525.1 mouse_genomes_project 2 135307137 135311119 - Gm14097 antisense antisense MGP_CASTEiJ_T0010097.1 MGP_CASTEiJ_G0008285.1 mouse_genomes_project 2 20071217 20071285 + Mir3967 miRNA miRNA MGP_CASTEiJ_T0013201.1 MGP_CASTEiJ_G0011364.1 mouse_genomes_project 2 79112128 79112579 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013077.1 MGP_CASTEiJ_G0011240.1 mouse_genomes_project 2 29519717 29520512 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055287.1 MGP_CASTEiJ_G0025049.1 mouse_genomes_project 2 74566308 74588989 + MGP_CASTEiJ_P0055287 Gm28230 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0099617.1 MGP_CASTEiJ_G0036530.1 mouse_genomes_project 2 1356058 1356165 - Gm23691 snRNA snRNA MGP_CASTEiJ_T0059461.1 MGP_CASTEiJ_G0026116.1 mouse_genomes_project 2 177107047 177109672 + MGP_CASTEiJ_P0059461 Mc3r protein_coding protein_coding MGP_CASTEiJ_T0052578.1 MGP_CASTEiJ_G0024570.1 mouse_genomes_project 2 15472609 15644823 + MGP_CASTEiJ_P0052578 Mllt10 protein_coding protein_coding MGP_CASTEiJ_T0052579.1 MGP_CASTEiJ_G0024570.1 mouse_genomes_project 2 15481741 15544926 + Mllt10 protein_coding processed_transcript MGP_CASTEiJ_T0052580.1 MGP_CASTEiJ_G0024570.1 mouse_genomes_project 2 15482031 15549504 + Mllt10 protein_coding processed_transcript MGP_CASTEiJ_T0052581.1 MGP_CASTEiJ_G0024570.1 mouse_genomes_project 2 15482034 15642582 + MGP_CASTEiJ_P0052581 Mllt10 protein_coding protein_coding MGP_CASTEiJ_T0052582.1 MGP_CASTEiJ_G0024570.1 mouse_genomes_project 2 15482155 15546390 + Mllt10 protein_coding processed_transcript MGP_CASTEiJ_T0052583.1 MGP_CASTEiJ_G0024570.1 mouse_genomes_project 2 15482184 15530168 + Mllt10 protein_coding processed_transcript MGP_CASTEiJ_T0052584.1 MGP_CASTEiJ_G0024570.1 mouse_genomes_project 2 15482191 15482606 + Mllt10 protein_coding processed_transcript MGP_CASTEiJ_T0052585.1 MGP_CASTEiJ_G0024570.1 mouse_genomes_project 2 15511407 15642424 + MGP_CASTEiJ_P0052585 Mllt10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052586.1 MGP_CASTEiJ_G0024570.1 mouse_genomes_project 2 15546286 15590610 + Mllt10 protein_coding processed_transcript MGP_CASTEiJ_T0052587.1 MGP_CASTEiJ_G0024570.1 mouse_genomes_project 2 15549430 15644822 + MGP_CASTEiJ_P0052587 Mllt10 protein_coding protein_coding MGP_CASTEiJ_T0052588.1 MGP_CASTEiJ_G0024570.1 mouse_genomes_project 2 15601472 15617953 + Mllt10 protein_coding processed_transcript MGP_CASTEiJ_T0100902.1 MGP_CASTEiJ_G0037815.1 mouse_genomes_project 2 129961290 129961348 + Gm22889 snoRNA snoRNA MGP_CASTEiJ_T0017150.1 MGP_CASTEiJ_G0014799.1 mouse_genomes_project 2 162186652 162189794 - Snhg17 processed_transcript lincRNA MGP_CASTEiJ_T0017151.1 MGP_CASTEiJ_G0014799.1 mouse_genomes_project 2 162188259 162194445 - Snhg17 processed_transcript lincRNA MGP_CASTEiJ_T0017152.1 MGP_CASTEiJ_G0014799.1 mouse_genomes_project 2 162188716 162194454 - Snhg17 processed_transcript lincRNA MGP_CASTEiJ_T0017153.1 MGP_CASTEiJ_G0014799.1 mouse_genomes_project 2 162188716 162194515 - Snhg17 processed_transcript lincRNA MGP_CASTEiJ_T0017154.1 MGP_CASTEiJ_G0014799.1 mouse_genomes_project 2 162188716 162194457 - Snhg17 processed_transcript retained_intron MGP_CASTEiJ_T0017155.1 MGP_CASTEiJ_G0014799.1 mouse_genomes_project 2 162188736 162194448 - Snhg17 processed_transcript retained_intron MGP_CASTEiJ_T0017156.1 MGP_CASTEiJ_G0014799.1 mouse_genomes_project 2 162188972 162191412 - Snhg17 processed_transcript lincRNA MGP_CASTEiJ_T0017157.1 MGP_CASTEiJ_G0014799.1 mouse_genomes_project 2 162192178 162194410 - Snhg17 processed_transcript lincRNA MGP_CASTEiJ_T0017158.1 MGP_CASTEiJ_G0014799.1 mouse_genomes_project 2 162193803 162194477 - Snhg17 processed_transcript lincRNA MGP_CASTEiJ_T0052419.1 MGP_CASTEiJ_G0024544.1 mouse_genomes_project 2 9044081 9045160 - Fbxo18 protein_coding processed_transcript MGP_CASTEiJ_T0052420.1 MGP_CASTEiJ_G0024544.1 mouse_genomes_project 2 9044083 9078394 - MGP_CASTEiJ_P0052420 Fbxo18 protein_coding protein_coding MGP_CASTEiJ_T0052421.1 MGP_CASTEiJ_G0024544.1 mouse_genomes_project 2 9045175 9051102 - Fbxo18 protein_coding retained_intron MGP_CASTEiJ_T0052422.1 MGP_CASTEiJ_G0024544.1 mouse_genomes_project 2 9049722 9078319 - Fbxo18 protein_coding retained_intron MGP_CASTEiJ_T0052423.1 MGP_CASTEiJ_G0024544.1 mouse_genomes_project 2 9050309 9058386 - MGP_CASTEiJ_P0052423 Fbxo18 protein_coding protein_coding MGP_CASTEiJ_T0052424.1 MGP_CASTEiJ_G0024544.1 mouse_genomes_project 2 9051327 9053649 - Fbxo18 protein_coding retained_intron MGP_CASTEiJ_T0052425.1 MGP_CASTEiJ_G0024544.1 mouse_genomes_project 2 9053558 9059303 - Fbxo18 protein_coding retained_intron MGP_CASTEiJ_T0052426.1 MGP_CASTEiJ_G0024544.1 mouse_genomes_project 2 9063761 9078362 - Fbxo18 protein_coding processed_transcript MGP_CASTEiJ_T0052427.1 MGP_CASTEiJ_G0024544.1 mouse_genomes_project 2 9065054 9078360 - Fbxo18 protein_coding processed_transcript MGP_CASTEiJ_T0052428.1 MGP_CASTEiJ_G0024544.1 mouse_genomes_project 2 9068324 9078319 - Fbxo18 protein_coding processed_transcript MGP_CASTEiJ_T0057443.1 MGP_CASTEiJ_G0025651.1 mouse_genomes_project 2 130440754 130444745 + Bcl2l11 protein_coding processed_transcript MGP_CASTEiJ_T0057444.1 MGP_CASTEiJ_G0025651.1 mouse_genomes_project 2 130440754 130446225 + MGP_CASTEiJ_P0057444 Bcl2l11 protein_coding protein_coding MGP_CASTEiJ_T0057445.1 MGP_CASTEiJ_G0025651.1 mouse_genomes_project 2 130440754 130477994 + MGP_CASTEiJ_P0057445 Bcl2l11 protein_coding protein_coding MGP_CASTEiJ_T0057446.1 MGP_CASTEiJ_G0025651.1 mouse_genomes_project 2 130440755 130479581 + MGP_CASTEiJ_P0057446 Bcl2l11 protein_coding protein_coding MGP_CASTEiJ_T0057447.1 MGP_CASTEiJ_G0025651.1 mouse_genomes_project 2 130440756 130475477 + MGP_CASTEiJ_P0057447 Bcl2l11 protein_coding protein_coding MGP_CASTEiJ_T0057448.1 MGP_CASTEiJ_G0025651.1 mouse_genomes_project 2 130440766 130478261 + MGP_CASTEiJ_P0057448 Bcl2l11 protein_coding protein_coding MGP_CASTEiJ_T0057449.1 MGP_CASTEiJ_G0025651.1 mouse_genomes_project 2 130442288 130444875 + Bcl2l11 protein_coding processed_transcript MGP_CASTEiJ_T0057450.1 MGP_CASTEiJ_G0025651.1 mouse_genomes_project 2 130442844 130443452 + Bcl2l11 protein_coding processed_transcript MGP_CASTEiJ_T0053374.1 MGP_CASTEiJ_G0024713.1 mouse_genomes_project 2 25343877 25415551 + MGP_CASTEiJ_P0053374 Rxra protein_coding protein_coding MGP_CASTEiJ_T0053375.1 MGP_CASTEiJ_G0024713.1 mouse_genomes_project 2 25379979 25434576 + MGP_CASTEiJ_P0053375 Rxra protein_coding protein_coding MGP_CASTEiJ_T0053376.1 MGP_CASTEiJ_G0024713.1 mouse_genomes_project 2 25381270 25434576 + MGP_CASTEiJ_P0053376 Rxra protein_coding protein_coding MGP_CASTEiJ_T0053377.1 MGP_CASTEiJ_G0024713.1 mouse_genomes_project 2 25410954 25435810 + MGP_CASTEiJ_P0053377 Rxra protein_coding protein_coding MGP_CASTEiJ_T0053378.1 MGP_CASTEiJ_G0024713.1 mouse_genomes_project 2 25410954 25437348 + MGP_CASTEiJ_P0053378 Rxra protein_coding protein_coding MGP_CASTEiJ_T0053379.1 MGP_CASTEiJ_G0024713.1 mouse_genomes_project 2 25413850 25422376 + Rxra protein_coding processed_transcript MGP_CASTEiJ_T0098869.1 MGP_CASTEiJ_G0035794.1 mouse_genomes_project 2 131888456 131905075 - Gm14040 sense_intronic sense_intronic MGP_CASTEiJ_T0052971.1 MGP_CASTEiJ_G0024638.1 mouse_genomes_project 2 22900469 22906249 - MGP_CASTEiJ_P0052971 Uap1l1 protein_coding protein_coding MGP_CASTEiJ_T0052972.1 MGP_CASTEiJ_G0024638.1 mouse_genomes_project 2 22902049 22903294 - Uap1l1 protein_coding processed_transcript MGP_CASTEiJ_T0052973.1 MGP_CASTEiJ_G0024638.1 mouse_genomes_project 2 22902050 22904265 - Uap1l1 protein_coding processed_transcript MGP_CASTEiJ_T0052974.1 MGP_CASTEiJ_G0024638.1 mouse_genomes_project 2 22902054 22904695 - Uap1l1 protein_coding processed_transcript MGP_CASTEiJ_T0052975.1 MGP_CASTEiJ_G0024638.1 mouse_genomes_project 2 22903897 22905224 - Uap1l1 protein_coding processed_transcript MGP_CASTEiJ_T0052976.1 MGP_CASTEiJ_G0024638.1 mouse_genomes_project 2 22904684 22906182 - Uap1l1 protein_coding processed_transcript MGP_CASTEiJ_T0013121.1 MGP_CASTEiJ_G0011284.1 mouse_genomes_project 2 47887510 47887938 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054287.1 MGP_CASTEiJ_G0024848.1 mouse_genomes_project 2 33535302 33558313 - MGP_CASTEiJ_P0054287 Stom protein_coding protein_coding MGP_CASTEiJ_T0054288.1 MGP_CASTEiJ_G0024848.1 mouse_genomes_project 2 33536678 33541840 - Stom protein_coding retained_intron MGP_CASTEiJ_T0052503.1 MGP_CASTEiJ_G0024555.1 mouse_genomes_project 2 11163778 11392907 - MGP_CASTEiJ_P0052503 Hacd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052504.1 MGP_CASTEiJ_G0024555.1 mouse_genomes_project 2 11356186 11392891 - MGP_CASTEiJ_P0052504 Hacd1 protein_coding protein_coding MGP_CASTEiJ_T0052505.1 MGP_CASTEiJ_G0024555.1 mouse_genomes_project 2 11356186 11392891 - MGP_CASTEiJ_P0052505 Hacd1 protein_coding protein_coding MGP_CASTEiJ_T0052506.1 MGP_CASTEiJ_G0024555.1 mouse_genomes_project 2 11356257 11393006 - MGP_CASTEiJ_P0052506 Hacd1 protein_coding protein_coding MGP_CASTEiJ_T0056745.1 MGP_CASTEiJ_G0025512.1 mouse_genomes_project 2 120862523 120884665 + MGP_CASTEiJ_P0056745 Casc5 protein_coding protein_coding MGP_CASTEiJ_T0056746.1 MGP_CASTEiJ_G0025512.1 mouse_genomes_project 2 120862523 120920423 + MGP_CASTEiJ_P0056746 Casc5 protein_coding protein_coding MGP_CASTEiJ_T0056747.1 MGP_CASTEiJ_G0025512.1 mouse_genomes_project 2 120862551 120881363 + MGP_CASTEiJ_P0056747 Casc5 protein_coding protein_coding MGP_CASTEiJ_T0056748.1 MGP_CASTEiJ_G0025512.1 mouse_genomes_project 2 120862554 120888312 + MGP_CASTEiJ_P0056748 Casc5 protein_coding protein_coding MGP_CASTEiJ_T0056749.1 MGP_CASTEiJ_G0025512.1 mouse_genomes_project 2 120872557 120921799 + MGP_CASTEiJ_P0056749 Casc5 protein_coding protein_coding MGP_CASTEiJ_T0007003.1 MGP_CASTEiJ_G0005757.1 mouse_genomes_project 2 43728327 43741700 + Gm28643 lincRNA lincRNA MGP_CASTEiJ_T0003916.1 MGP_CASTEiJ_G0003489.1 mouse_genomes_project 2 105488842 105492693 + Gm13883 antisense antisense MGP_CASTEiJ_T0003917.1 MGP_CASTEiJ_G0003489.1 mouse_genomes_project 2 105488842 105510529 + Gm13883 antisense antisense MGP_CASTEiJ_T0006996.1 MGP_CASTEiJ_G0005752.1 mouse_genomes_project 2 33444521 33446204 + Gm13605 lincRNA lincRNA MGP_CASTEiJ_T0057809.1 MGP_CASTEiJ_G0025734.1 mouse_genomes_project 2 137459518 138176285 + MGP_CASTEiJ_P0057809 Plcb1 protein_coding protein_coding MGP_CASTEiJ_T0057810.1 MGP_CASTEiJ_G0025734.1 mouse_genomes_project 2 137459610 138176296 + MGP_CASTEiJ_P0057810 Plcb1 protein_coding protein_coding MGP_CASTEiJ_T0057811.1 MGP_CASTEiJ_G0025734.1 mouse_genomes_project 2 137459626 137672262 + Plcb1 protein_coding retained_intron MGP_CASTEiJ_T0057812.1 MGP_CASTEiJ_G0025734.1 mouse_genomes_project 2 137459680 137946950 + Plcb1 protein_coding retained_intron MGP_CASTEiJ_T0057813.1 MGP_CASTEiJ_G0025734.1 mouse_genomes_project 2 137459981 138103041 + MGP_CASTEiJ_P0057813 Plcb1 protein_coding protein_coding MGP_CASTEiJ_T0057814.1 MGP_CASTEiJ_G0025734.1 mouse_genomes_project 2 137889789 138112010 + MGP_CASTEiJ_P0057814 Plcb1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057815.1 MGP_CASTEiJ_G0025734.1 mouse_genomes_project 2 137912271 137957950 + Plcb1 protein_coding processed_transcript MGP_CASTEiJ_T0057816.1 MGP_CASTEiJ_G0025734.1 mouse_genomes_project 2 137912318 137957955 + MGP_CASTEiJ_P0057816 Plcb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057817.1 MGP_CASTEiJ_G0025734.1 mouse_genomes_project 2 137941583 137947838 + Plcb1 protein_coding processed_transcript MGP_CASTEiJ_T0058222.1 MGP_CASTEiJ_G0025836.1 mouse_genomes_project 2 155667360 155675274 - MGP_CASTEiJ_P0058222 Nrsn2 protein_coding protein_coding MGP_CASTEiJ_T0056558.1 MGP_CASTEiJ_G0025460.1 mouse_genomes_project 2 113462757 113463720 - MGP_CASTEiJ_P0056558 Olfr1309 protein_coding protein_coding MGP_CASTEiJ_T0056711.1 MGP_CASTEiJ_G0025503.1 mouse_genomes_project 2 120564178 120572688 - MGP_CASTEiJ_P0056711 protein_coding protein_coding MGP_CASTEiJ_T0056712.1 MGP_CASTEiJ_G0025503.1 mouse_genomes_project 2 120567524 120572652 - protein_coding retained_intron MGP_CASTEiJ_T0053157.1 MGP_CASTEiJ_G0024676.1 mouse_genomes_project 2 23811985 23841859 - MGP_CASTEiJ_P0053157 Qsox2 protein_coding protein_coding MGP_CASTEiJ_T0053158.1 MGP_CASTEiJ_G0024676.1 mouse_genomes_project 2 23811987 23842032 - MGP_CASTEiJ_P0053158 Qsox2 protein_coding protein_coding MGP_CASTEiJ_T0058725.1 MGP_CASTEiJ_G0025947.1 mouse_genomes_project 2 160525863 160542683 + MGP_CASTEiJ_P0058725 Tgif2 protein_coding protein_coding MGP_CASTEiJ_T0058726.1 MGP_CASTEiJ_G0025947.1 mouse_genomes_project 2 160525956 160542683 + MGP_CASTEiJ_P0058726 Tgif2 protein_coding protein_coding MGP_CASTEiJ_T0058727.1 MGP_CASTEiJ_G0025947.1 mouse_genomes_project 2 160526874 160533528 + MGP_CASTEiJ_P0058727 Tgif2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058728.1 MGP_CASTEiJ_G0025947.1 mouse_genomes_project 2 160535802 160539014 + Tgif2 protein_coding processed_transcript MGP_CASTEiJ_T0058729.1 MGP_CASTEiJ_G0025947.1 mouse_genomes_project 2 160536677 160539368 + Tgif2 protein_coding processed_transcript MGP_CASTEiJ_T0003810.1 MGP_CASTEiJ_G0003412.1 mouse_genomes_project 2 26291462 26305336 + Gm13381 antisense antisense MGP_CASTEiJ_T0003811.1 MGP_CASTEiJ_G0003412.1 mouse_genomes_project 2 26291787 26305618 + Gm13381 antisense antisense MGP_CASTEiJ_T0053843.1 MGP_CASTEiJ_G0024785.1 mouse_genomes_project 2 29641031 29652435 + MGP_CASTEiJ_P0053843 Exosc2 protein_coding protein_coding MGP_CASTEiJ_T0053844.1 MGP_CASTEiJ_G0024785.1 mouse_genomes_project 2 29641035 29652107 + Exosc2 protein_coding retained_intron MGP_CASTEiJ_T0053845.1 MGP_CASTEiJ_G0024785.1 mouse_genomes_project 2 29641050 29651646 + MGP_CASTEiJ_P0053845 Exosc2 protein_coding protein_coding MGP_CASTEiJ_T0053846.1 MGP_CASTEiJ_G0024785.1 mouse_genomes_project 2 29641059 29649584 + MGP_CASTEiJ_P0053846 Exosc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053847.1 MGP_CASTEiJ_G0024785.1 mouse_genomes_project 2 29644344 29649657 + Exosc2 protein_coding processed_transcript MGP_CASTEiJ_T0053848.1 MGP_CASTEiJ_G0024785.1 mouse_genomes_project 2 29649407 29651639 + Exosc2 protein_coding retained_intron MGP_CASTEiJ_T0058105.1 MGP_CASTEiJ_G0025808.1 mouse_genomes_project 2 153822607 153876635 - MGP_CASTEiJ_P0058105 Acss1 protein_coding protein_coding MGP_CASTEiJ_T0058106.1 MGP_CASTEiJ_G0025808.1 mouse_genomes_project 2 153832736 153841964 - Acss1 protein_coding processed_transcript MGP_CASTEiJ_T0058107.1 MGP_CASTEiJ_G0025808.1 mouse_genomes_project 2 153832816 153841962 - Acss1 protein_coding processed_transcript MGP_CASTEiJ_T0058108.1 MGP_CASTEiJ_G0025808.1 mouse_genomes_project 2 153841827 153876880 - Acss1 protein_coding processed_transcript MGP_CASTEiJ_T0058109.1 MGP_CASTEiJ_G0025808.1 mouse_genomes_project 2 153867487 153876591 - Acss1 protein_coding retained_intron MGP_CASTEiJ_T0013396.1 MGP_CASTEiJ_G0011559.1 mouse_genomes_project 2 154208732 154209514 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100926.1 MGP_CASTEiJ_G0037839.1 mouse_genomes_project 2 163018900 163019032 + Gm25090 snoRNA snoRNA MGP_CASTEiJ_T0013400.1 MGP_CASTEiJ_G0011563.1 mouse_genomes_project 2 155778363 155779653 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056209.1 MGP_CASTEiJ_G0025367.1 mouse_genomes_project 2 95047841 95049079 - MGP_CASTEiJ_P0056209 protein_coding protein_coding MGP_CASTEiJ_T0056210.1 MGP_CASTEiJ_G0025367.1 mouse_genomes_project 2 95047847 95049231 - MGP_CASTEiJ_P0056210 protein_coding protein_coding MGP_CASTEiJ_T0057901.1 MGP_CASTEiJ_G0025752.1 mouse_genomes_project 2 143553439 143573777 - Flrt3 protein_coding processed_transcript MGP_CASTEiJ_T0057902.1 MGP_CASTEiJ_G0025752.1 mouse_genomes_project 2 143560562 143573796 - MGP_CASTEiJ_P0057902 Flrt3 protein_coding protein_coding MGP_CASTEiJ_T0057903.1 MGP_CASTEiJ_G0025752.1 mouse_genomes_project 2 143561686 143573727 - MGP_CASTEiJ_P0057903 Flrt3 protein_coding protein_coding MGP_CASTEiJ_T0059235.1 MGP_CASTEiJ_G0026071.1 mouse_genomes_project 2 169716263 169722979 - MGP_CASTEiJ_P0059235 Trp53rka protein_coding protein_coding MGP_CASTEiJ_T0059237.1 MGP_CASTEiJ_G0026071.1 mouse_genomes_project 2 169718499 169722771 - Trp53rka protein_coding processed_transcript MGP_CASTEiJ_T0000997.1 MGP_CASTEiJ_G0000933.1 mouse_genomes_project 2 10327640 10332958 + TEC TEC MGP_CASTEiJ_T0057595.1 MGP_CASTEiJ_G0025691.1 mouse_genomes_project 2 133051346 133070025 - MGP_CASTEiJ_P0057595 Fastkd5 protein_coding protein_coding MGP_CASTEiJ_T0057596.1 MGP_CASTEiJ_G0025691.1 mouse_genomes_project 2 133051348 133070016 - MGP_CASTEiJ_P0057596 Fastkd5 protein_coding protein_coding MGP_CASTEiJ_T0013278.1 MGP_CASTEiJ_G0011441.1 mouse_genomes_project 2 105049328 105049570 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055887.1 MGP_CASTEiJ_G0025321.1 mouse_genomes_project 2 91744918 91748709 - Ndufs3 protein_coding processed_transcript MGP_CASTEiJ_T0055888.1 MGP_CASTEiJ_G0025321.1 mouse_genomes_project 2 91744920 91756647 - MGP_CASTEiJ_P0055888 Ndufs3 protein_coding protein_coding MGP_CASTEiJ_T0055889.1 MGP_CASTEiJ_G0025321.1 mouse_genomes_project 2 91744922 91754509 - Ndufs3 protein_coding processed_transcript MGP_CASTEiJ_T0055890.1 MGP_CASTEiJ_G0025321.1 mouse_genomes_project 2 91745034 91749193 - Ndufs3 protein_coding processed_transcript MGP_CASTEiJ_T0055891.1 MGP_CASTEiJ_G0025321.1 mouse_genomes_project 2 91748550 91756462 - Ndufs3 protein_coding processed_transcript MGP_CASTEiJ_T0055892.1 MGP_CASTEiJ_G0025321.1 mouse_genomes_project 2 91755647 91756522 - Ndufs3 protein_coding processed_transcript MGP_CASTEiJ_T0053636.1 MGP_CASTEiJ_G0024756.1 mouse_genomes_project 2 28073797 28099812 + MGP_CASTEiJ_P0053636 protein_coding protein_coding MGP_CASTEiJ_T0053637.1 MGP_CASTEiJ_G0024756.1 mouse_genomes_project 2 28073804 28099817 + MGP_CASTEiJ_P0053637 protein_coding protein_coding MGP_CASTEiJ_T0054910.1 MGP_CASTEiJ_G0024974.1 mouse_genomes_project 2 64504631 64553775 - MGP_CASTEiJ_P0054910 Slc38a11 protein_coding protein_coding MGP_CASTEiJ_T0054911.1 MGP_CASTEiJ_G0024974.1 mouse_genomes_project 2 64504686 64554233 - MGP_CASTEiJ_P0054911 Slc38a11 protein_coding protein_coding MGP_CASTEiJ_T0054912.1 MGP_CASTEiJ_G0024974.1 mouse_genomes_project 2 64512764 64554348 - MGP_CASTEiJ_P0054912 Slc38a11 protein_coding protein_coding MGP_CASTEiJ_T0054913.1 MGP_CASTEiJ_G0024974.1 mouse_genomes_project 2 64539802 64554348 - Slc38a11 protein_coding processed_transcript MGP_CASTEiJ_T0054914.1 MGP_CASTEiJ_G0024974.1 mouse_genomes_project 2 64540369 64554314 - MGP_CASTEiJ_P0054914 Slc38a11 protein_coding protein_coding MGP_CASTEiJ_T0054915.1 MGP_CASTEiJ_G0024974.1 mouse_genomes_project 2 64543187 64554237 - Slc38a11 protein_coding processed_transcript MGP_CASTEiJ_T0054916.1 MGP_CASTEiJ_G0024974.1 mouse_genomes_project 2 64545091 64554344 - Slc38a11 protein_coding processed_transcript MGP_CASTEiJ_T0055631.1 MGP_CASTEiJ_G0025134.1 mouse_genomes_project 2 86229222 86230170 + MGP_CASTEiJ_P0055631 Olfr1020 protein_coding protein_coding MGP_CASTEiJ_T0003790.1 MGP_CASTEiJ_G0003398.1 mouse_genomes_project 2 18871179 18896977 - Gm13327 antisense antisense MGP_CASTEiJ_T0013274.1 MGP_CASTEiJ_G0011437.1 mouse_genomes_project 2 104739242 104739672 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058382.1 MGP_CASTEiJ_G0025887.1 mouse_genomes_project 2 157681306 157687234 + MGP_CASTEiJ_P0058382 Bpifa5 protein_coding protein_coding MGP_CASTEiJ_T0102201.1 MGP_CASTEiJ_G0038926.1 mouse_genomes_project 2 33046191 33046959 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013439.1 MGP_CASTEiJ_G0011602.1 mouse_genomes_project 2 171366946 171368869 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057434.1 MGP_CASTEiJ_G0025648.1 mouse_genomes_project 2 130087852 130088954 - MGP_CASTEiJ_P0057434 1500011K16Rik protein_coding protein_coding MGP_CASTEiJ_T0053639.1 MGP_CASTEiJ_G0024758.1 mouse_genomes_project 2 28102256 28120502 + MGP_CASTEiJ_P0053639 Phyhd1 protein_coding protein_coding MGP_CASTEiJ_T0053640.1 MGP_CASTEiJ_G0024758.1 mouse_genomes_project 2 28102582 28120503 + MGP_CASTEiJ_P0053640 Phyhd1 protein_coding protein_coding MGP_CASTEiJ_T0053641.1 MGP_CASTEiJ_G0024758.1 mouse_genomes_project 2 28102774 28120502 + MGP_CASTEiJ_P0053641 Phyhd1 protein_coding protein_coding MGP_CASTEiJ_T0053642.1 MGP_CASTEiJ_G0024758.1 mouse_genomes_project 2 28102788 28119638 + MGP_CASTEiJ_P0053642 Phyhd1 protein_coding protein_coding MGP_CASTEiJ_T0053643.1 MGP_CASTEiJ_G0024758.1 mouse_genomes_project 2 28102872 28118815 + MGP_CASTEiJ_P0053643 Phyhd1 protein_coding protein_coding MGP_CASTEiJ_T0053644.1 MGP_CASTEiJ_G0024758.1 mouse_genomes_project 2 28102902 28120491 + MGP_CASTEiJ_P0053644 Phyhd1 protein_coding protein_coding MGP_CASTEiJ_T0053645.1 MGP_CASTEiJ_G0024758.1 mouse_genomes_project 2 28102904 28118096 + Phyhd1 protein_coding processed_transcript MGP_CASTEiJ_T0053646.1 MGP_CASTEiJ_G0024758.1 mouse_genomes_project 2 28102909 28119686 + MGP_CASTEiJ_P0053646 Phyhd1 protein_coding protein_coding MGP_CASTEiJ_T0053647.1 MGP_CASTEiJ_G0024758.1 mouse_genomes_project 2 28102916 28120452 + MGP_CASTEiJ_P0053647 Phyhd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053648.1 MGP_CASTEiJ_G0024758.1 mouse_genomes_project 2 28102916 28120452 + MGP_CASTEiJ_P0053648 Phyhd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053649.1 MGP_CASTEiJ_G0024758.1 mouse_genomes_project 2 28115613 28120494 + MGP_CASTEiJ_P0053649 Phyhd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053650.1 MGP_CASTEiJ_G0024758.1 mouse_genomes_project 2 28118200 28120208 + Phyhd1 protein_coding retained_intron MGP_CASTEiJ_T0053651.1 MGP_CASTEiJ_G0024758.1 mouse_genomes_project 2 28118247 28119080 + Phyhd1 protein_coding retained_intron MGP_CASTEiJ_T0100885.1 MGP_CASTEiJ_G0037798.1 mouse_genomes_project 2 80889298 80889425 + Gm25420 snoRNA snoRNA MGP_CASTEiJ_T0053160.1 MGP_CASTEiJ_G0024678.1 mouse_genomes_project 2 23859681 23865476 - MGP_CASTEiJ_P0053160 C030048H21Rik protein_coding protein_coding MGP_CASTEiJ_T0054173.1 MGP_CASTEiJ_G0024834.1 mouse_genomes_project 2 32580546 32680002 + MGP_CASTEiJ_P0054173 Mapkap1 protein_coding protein_coding MGP_CASTEiJ_T0054174.1 MGP_CASTEiJ_G0024834.1 mouse_genomes_project 2 32580644 32607396 + MGP_CASTEiJ_P0054174 Mapkap1 protein_coding protein_coding MGP_CASTEiJ_T0054175.1 MGP_CASTEiJ_G0024834.1 mouse_genomes_project 2 32580647 32658895 + Mapkap1 protein_coding processed_transcript MGP_CASTEiJ_T0054176.1 MGP_CASTEiJ_G0024834.1 mouse_genomes_project 2 32580652 32809611 + MGP_CASTEiJ_P0054176 Mapkap1 protein_coding protein_coding MGP_CASTEiJ_T0054177.1 MGP_CASTEiJ_G0024834.1 mouse_genomes_project 2 32580653 32808194 + MGP_CASTEiJ_P0054177 Mapkap1 protein_coding protein_coding MGP_CASTEiJ_T0054178.1 MGP_CASTEiJ_G0024834.1 mouse_genomes_project 2 32613967 32715596 + Mapkap1 protein_coding processed_transcript MGP_CASTEiJ_T0054179.1 MGP_CASTEiJ_G0024834.1 mouse_genomes_project 2 32620545 32680159 + MGP_CASTEiJ_P0054179 Mapkap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054180.1 MGP_CASTEiJ_G0024834.1 mouse_genomes_project 2 32804198 32808549 + Mapkap1 protein_coding processed_transcript MGP_CASTEiJ_T0052173.1 MGP_CASTEiJ_G0024505.1 mouse_genomes_project 2 433245 452247 - MGP_CASTEiJ_P0052173 Suv39h2 protein_coding protein_coding MGP_CASTEiJ_T0052174.1 MGP_CASTEiJ_G0024505.1 mouse_genomes_project 2 434980 452176 - MGP_CASTEiJ_P0052174 Suv39h2 protein_coding protein_coding MGP_CASTEiJ_T0052175.1 MGP_CASTEiJ_G0024505.1 mouse_genomes_project 2 434981 451635 - MGP_CASTEiJ_P0052175 Suv39h2 protein_coding protein_coding MGP_CASTEiJ_T0052176.1 MGP_CASTEiJ_G0024505.1 mouse_genomes_project 2 435003 452185 - MGP_CASTEiJ_P0052176 Suv39h2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013260.1 MGP_CASTEiJ_G0011423.1 mouse_genomes_project 2 99069749 99070238 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001004.1 MGP_CASTEiJ_G0000940.1 mouse_genomes_project 2 11942867 11945524 + TEC TEC MGP_CASTEiJ_T0000983.1 MGP_CASTEiJ_G0000919.1 mouse_genomes_project 2 6827009 6827700 - TEC TEC MGP_CASTEiJ_T0003800.1 MGP_CASTEiJ_G0003404.1 mouse_genomes_project 2 23645477 23646708 + Gm13554 antisense antisense MGP_CASTEiJ_T0017172.1 MGP_CASTEiJ_G0014808.1 mouse_genomes_project 2 176799091 176804957 - 1700028P15Rik processed_transcript lincRNA MGP_CASTEiJ_T0017173.1 MGP_CASTEiJ_G0014808.1 mouse_genomes_project 2 176800383 176804291 - 1700028P15Rik processed_transcript lincRNA MGP_CASTEiJ_T0017174.1 MGP_CASTEiJ_G0014808.1 mouse_genomes_project 2 176800384 176804982 - 1700028P15Rik processed_transcript retained_intron MGP_CASTEiJ_T0007032.1 MGP_CASTEiJ_G0005783.1 mouse_genomes_project 2 67010074 67020447 - Gm26743 lincRNA lincRNA MGP_CASTEiJ_T0006988.1 MGP_CASTEiJ_G0005746.1 mouse_genomes_project 2 31611020 31626123 + Gm13530 lincRNA lincRNA MGP_CASTEiJ_T0055755.1 MGP_CASTEiJ_G0025244.1 mouse_genomes_project 2 89275156 89276095 + MGP_CASTEiJ_P0055755 Olfr1188 protein_coding protein_coding MGP_CASTEiJ_T0099624.1 MGP_CASTEiJ_G0036537.1 mouse_genomes_project 2 22740856 22740961 + Gm22572 snRNA snRNA MGP_CASTEiJ_T0007015.1 MGP_CASTEiJ_G0005768.1 mouse_genomes_project 2 50164368 50166240 - Gm13499 lincRNA lincRNA MGP_CASTEiJ_T0057202.1 MGP_CASTEiJ_G0025597.1 mouse_genomes_project 2 124666760 124684434 - MGP_CASTEiJ_P0057202 Gatm protein_coding protein_coding MGP_CASTEiJ_T0057203.1 MGP_CASTEiJ_G0025597.1 mouse_genomes_project 2 124667398 124684371 - MGP_CASTEiJ_P0057203 Gatm protein_coding unknown_likely_coding MGP_CASTEiJ_T0057204.1 MGP_CASTEiJ_G0025597.1 mouse_genomes_project 2 124667633 124670677 - Gatm protein_coding processed_transcript MGP_CASTEiJ_T0057205.1 MGP_CASTEiJ_G0025597.1 mouse_genomes_project 2 124667750 124670955 - Gatm protein_coding retained_intron MGP_CASTEiJ_T0056294.1 MGP_CASTEiJ_G0025385.1 mouse_genomes_project 2 103962114 104055803 - MGP_CASTEiJ_P0056294 Cd44 protein_coding protein_coding MGP_CASTEiJ_T0056295.1 MGP_CASTEiJ_G0025385.1 mouse_genomes_project 2 103962114 104055764 - MGP_CASTEiJ_P0056295 Cd44 protein_coding protein_coding MGP_CASTEiJ_T0056296.1 MGP_CASTEiJ_G0025385.1 mouse_genomes_project 2 103963509 104055634 - MGP_CASTEiJ_P0056296 Cd44 protein_coding protein_coding MGP_CASTEiJ_T0056297.1 MGP_CASTEiJ_G0025385.1 mouse_genomes_project 2 103963527 104055649 - MGP_CASTEiJ_P0056297 Cd44 protein_coding protein_coding MGP_CASTEiJ_T0056298.1 MGP_CASTEiJ_G0025385.1 mouse_genomes_project 2 103965094 104055508 - MGP_CASTEiJ_P0056298 Cd44 protein_coding protein_coding MGP_CASTEiJ_T0056299.1 MGP_CASTEiJ_G0025385.1 mouse_genomes_project 2 103965094 104055489 - MGP_CASTEiJ_P0056299 Cd44 protein_coding protein_coding MGP_CASTEiJ_T0056300.1 MGP_CASTEiJ_G0025385.1 mouse_genomes_project 2 103965104 104055489 - MGP_CASTEiJ_P0056300 Cd44 protein_coding protein_coding MGP_CASTEiJ_T0056301.1 MGP_CASTEiJ_G0025385.1 mouse_genomes_project 2 103965107 104055485 - MGP_CASTEiJ_P0056301 Cd44 protein_coding protein_coding MGP_CASTEiJ_T0056302.1 MGP_CASTEiJ_G0025385.1 mouse_genomes_project 2 104005065 104055597 - Cd44 protein_coding retained_intron MGP_CASTEiJ_T0007075.1 MGP_CASTEiJ_G0005819.1 mouse_genomes_project 2 93518358 93529466 - Gm13817 lincRNA lincRNA MGP_CASTEiJ_T0054392.1 MGP_CASTEiJ_G0024891.1 mouse_genomes_project 2 35626889 35637785 - MGP_CASTEiJ_P0054392 Zbtb26 protein_coding protein_coding MGP_CASTEiJ_T0054393.1 MGP_CASTEiJ_G0024891.1 mouse_genomes_project 2 35629738 35637784 - MGP_CASTEiJ_P0054393 Zbtb26 protein_coding protein_coding MGP_CASTEiJ_T0054394.1 MGP_CASTEiJ_G0024891.1 mouse_genomes_project 2 35633164 35637799 - Zbtb26 protein_coding processed_transcript MGP_CASTEiJ_T0057068.1 MGP_CASTEiJ_G0025568.1 mouse_genomes_project 2 123248766 123272040 + MGP_CASTEiJ_P0057068 Map1a protein_coding protein_coding MGP_CASTEiJ_T0057069.1 MGP_CASTEiJ_G0025568.1 mouse_genomes_project 2 123248936 123250239 + Map1a protein_coding processed_transcript MGP_CASTEiJ_T0057070.1 MGP_CASTEiJ_G0025568.1 mouse_genomes_project 2 123254632 123270649 + MGP_CASTEiJ_P0057070 Map1a protein_coding protein_coding MGP_CASTEiJ_T0057071.1 MGP_CASTEiJ_G0025568.1 mouse_genomes_project 2 123254641 123268832 + Map1a protein_coding processed_transcript MGP_CASTEiJ_T0056379.1 MGP_CASTEiJ_G0025399.1 mouse_genomes_project 2 105315623 105321506 + MGP_CASTEiJ_P0056379 protein_coding protein_coding MGP_CASTEiJ_T0054402.1 MGP_CASTEiJ_G0024893.1 mouse_genomes_project 2 35681788 35856704 - MGP_CASTEiJ_P0054402 Strbp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054408.1 MGP_CASTEiJ_G0024893.1 mouse_genomes_project 2 35773620 35856770 - MGP_CASTEiJ_P0054408 Strbp protein_coding protein_coding MGP_CASTEiJ_T0054409.1 MGP_CASTEiJ_G0024893.1 mouse_genomes_project 2 35773773 35797984 - Strbp protein_coding processed_transcript MGP_CASTEiJ_T0054410.1 MGP_CASTEiJ_G0024893.1 mouse_genomes_project 2 35783303 35790279 - MGP_CASTEiJ_P0054410 Strbp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054411.1 MGP_CASTEiJ_G0024893.1 mouse_genomes_project 2 35786922 35917528 - MGP_CASTEiJ_P0054411 Strbp protein_coding protein_coding MGP_CASTEiJ_T0054412.1 MGP_CASTEiJ_G0024893.1 mouse_genomes_project 2 35841613 35917601 - Strbp protein_coding processed_transcript MGP_CASTEiJ_T0054413.1 MGP_CASTEiJ_G0024893.1 mouse_genomes_project 2 35842142 35868132 - MGP_CASTEiJ_P0054413 Strbp protein_coding protein_coding MGP_CASTEiJ_T0054414.1 MGP_CASTEiJ_G0024893.1 mouse_genomes_project 2 35847563 35918112 - MGP_CASTEiJ_P0054414 Strbp protein_coding protein_coding MGP_CASTEiJ_T0054415.1 MGP_CASTEiJ_G0024893.1 mouse_genomes_project 2 35856604 35917402 - Strbp protein_coding processed_transcript MGP_CASTEiJ_T0055280.1 MGP_CASTEiJ_G0025045.1 mouse_genomes_project 2 74537068 74539546 + MGP_CASTEiJ_P0055280 Hoxd9 protein_coding protein_coding MGP_CASTEiJ_T0054973.1 MGP_CASTEiJ_G0024986.1 mouse_genomes_project 2 67570856 67869889 - MGP_CASTEiJ_P0054973 Stk39 protein_coding protein_coding MGP_CASTEiJ_T0054974.1 MGP_CASTEiJ_G0024986.1 mouse_genomes_project 2 67570859 67743093 - Stk39 protein_coding retained_intron MGP_CASTEiJ_T0054975.1 MGP_CASTEiJ_G0024986.1 mouse_genomes_project 2 67572150 67583762 - Stk39 protein_coding processed_transcript MGP_CASTEiJ_T0054976.1 MGP_CASTEiJ_G0024986.1 mouse_genomes_project 2 67572150 67616084 - Stk39 protein_coding processed_transcript MGP_CASTEiJ_T0054977.1 MGP_CASTEiJ_G0024986.1 mouse_genomes_project 2 67572150 67616089 - Stk39 protein_coding processed_transcript MGP_CASTEiJ_T0054978.1 MGP_CASTEiJ_G0024986.1 mouse_genomes_project 2 67572157 67616062 - Stk39 protein_coding processed_transcript MGP_CASTEiJ_T0054979.1 MGP_CASTEiJ_G0024986.1 mouse_genomes_project 2 67628975 67869561 - Stk39 protein_coding retained_intron MGP_CASTEiJ_T0054980.1 MGP_CASTEiJ_G0024986.1 mouse_genomes_project 2 67733385 67767912 - Stk39 protein_coding processed_transcript MGP_CASTEiJ_T0010177.1 MGP_CASTEiJ_G0008365.1 mouse_genomes_project 2 133788024 133788110 + Mir103-2 miRNA miRNA MGP_CASTEiJ_T0055968.1 MGP_CASTEiJ_G0025330.1 mouse_genomes_project 2 92055152 92065613 - Nr1h3 protein_coding retained_intron MGP_CASTEiJ_T0055969.1 MGP_CASTEiJ_G0025330.1 mouse_genomes_project 2 92055152 92065704 - MGP_CASTEiJ_P0055969 Nr1h3 protein_coding protein_coding MGP_CASTEiJ_T0055970.1 MGP_CASTEiJ_G0025330.1 mouse_genomes_project 2 92055152 92065623 - MGP_CASTEiJ_P0055970 Nr1h3 protein_coding protein_coding MGP_CASTEiJ_T0055971.1 MGP_CASTEiJ_G0025330.1 mouse_genomes_project 2 92055183 92065739 - MGP_CASTEiJ_P0055971 Nr1h3 protein_coding protein_coding MGP_CASTEiJ_T0055972.1 MGP_CASTEiJ_G0025330.1 mouse_genomes_project 2 92055183 92065473 - MGP_CASTEiJ_P0055972 Nr1h3 protein_coding protein_coding MGP_CASTEiJ_T0055973.1 MGP_CASTEiJ_G0025330.1 mouse_genomes_project 2 92055297 92063375 - Nr1h3 protein_coding retained_intron MGP_CASTEiJ_T0055974.1 MGP_CASTEiJ_G0025330.1 mouse_genomes_project 2 92061171 92061922 - Nr1h3 protein_coding retained_intron MGP_CASTEiJ_T0055975.1 MGP_CASTEiJ_G0025330.1 mouse_genomes_project 2 92062661 92073223 - Nr1h3 protein_coding processed_transcript MGP_CASTEiJ_T0057798.1 MGP_CASTEiJ_G0025730.1 mouse_genomes_project 2 135520505 135568874 - Fermt1 protein_coding retained_intron MGP_CASTEiJ_T0057799.1 MGP_CASTEiJ_G0025730.1 mouse_genomes_project 2 135520505 135569151 - MGP_CASTEiJ_P0057799 Fermt1 protein_coding protein_coding MGP_CASTEiJ_T0057800.1 MGP_CASTEiJ_G0025730.1 mouse_genomes_project 2 135558165 135564045 - Fermt1 protein_coding processed_transcript MGP_CASTEiJ_T0057801.1 MGP_CASTEiJ_G0025730.1 mouse_genomes_project 2 135561151 135563911 - Fermt1 protein_coding processed_transcript MGP_CASTEiJ_T0057950.1 MGP_CASTEiJ_G0025765.1 mouse_genomes_project 2 147421220 147426942 + MGP_CASTEiJ_P0057950 Pet117 protein_coding protein_coding MGP_CASTEiJ_T0055776.1 MGP_CASTEiJ_G0025263.1 mouse_genomes_project 2 89829034 89829970 - MGP_CASTEiJ_P0055776 Olfr1216 protein_coding protein_coding MGP_CASTEiJ_T0013026.1 MGP_CASTEiJ_G0011189.1 mouse_genomes_project 2 9697245 9697645 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057272.1 MGP_CASTEiJ_G0025612.1 mouse_genomes_project 2 127888671 127890358 + MGP_CASTEiJ_P0057272 Eid1 protein_coding protein_coding MGP_CASTEiJ_T0058089.1 MGP_CASTEiJ_G0025802.1 mouse_genomes_project 2 152643772 152647281 + MGP_CASTEiJ_P0058089 Cst10 protein_coding protein_coding MGP_CASTEiJ_T0058090.1 MGP_CASTEiJ_G0025802.1 mouse_genomes_project 2 152643964 152647281 + MGP_CASTEiJ_P0058090 Cst10 protein_coding protein_coding MGP_CASTEiJ_T0058091.1 MGP_CASTEiJ_G0025802.1 mouse_genomes_project 2 152644048 152647281 + MGP_CASTEiJ_P0058091 Cst10 protein_coding protein_coding MGP_CASTEiJ_T0055062.1 MGP_CASTEiJ_G0025005.1 mouse_genomes_project 2 69366771 69511150 + MGP_CASTEiJ_P0055062 Ubr3 protein_coding protein_coding MGP_CASTEiJ_T0055063.1 MGP_CASTEiJ_G0025005.1 mouse_genomes_project 2 69366771 69511150 + MGP_CASTEiJ_P0055063 Ubr3 protein_coding protein_coding MGP_CASTEiJ_T0055064.1 MGP_CASTEiJ_G0025005.1 mouse_genomes_project 2 69366828 69412472 + MGP_CASTEiJ_P0055064 Ubr3 protein_coding protein_coding MGP_CASTEiJ_T0055065.1 MGP_CASTEiJ_G0025005.1 mouse_genomes_project 2 69409647 69418989 + Ubr3 protein_coding processed_transcript MGP_CASTEiJ_T0055066.1 MGP_CASTEiJ_G0025005.1 mouse_genomes_project 2 69471595 69496584 + MGP_CASTEiJ_P0055066 Ubr3 protein_coding protein_coding MGP_CASTEiJ_T0055067.1 MGP_CASTEiJ_G0025005.1 mouse_genomes_project 2 69478047 69509681 + Ubr3 protein_coding processed_transcript MGP_CASTEiJ_T0055068.1 MGP_CASTEiJ_G0025005.1 mouse_genomes_project 2 69484736 69496723 + Ubr3 protein_coding processed_transcript MGP_CASTEiJ_T0055069.1 MGP_CASTEiJ_G0025005.1 mouse_genomes_project 2 69496402 69503593 + Ubr3 protein_coding processed_transcript MGP_CASTEiJ_T0055070.1 MGP_CASTEiJ_G0025005.1 mouse_genomes_project 2 69507263 69508322 + Ubr3 protein_coding processed_transcript MGP_CASTEiJ_T0055071.1 MGP_CASTEiJ_G0025005.1 mouse_genomes_project 2 69507647 69509356 + Ubr3 protein_coding processed_transcript MGP_CASTEiJ_T0013033.1 MGP_CASTEiJ_G0011196.1 mouse_genomes_project 2 12710973 12711769 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059696.1 MGP_CASTEiJ_G0026179.1 mouse_genomes_project 2 183751138 183767698 - MGP_CASTEiJ_P0059696 Ythdf1 protein_coding protein_coding MGP_CASTEiJ_T0059697.1 MGP_CASTEiJ_G0026179.1 mouse_genomes_project 2 183752131 183767698 - MGP_CASTEiJ_P0059697 Ythdf1 protein_coding protein_coding MGP_CASTEiJ_T0059698.1 MGP_CASTEiJ_G0026179.1 mouse_genomes_project 2 183758510 183767136 - MGP_CASTEiJ_P0059698 Ythdf1 protein_coding protein_coding MGP_CASTEiJ_T0052909.1 MGP_CASTEiJ_G0024627.1 mouse_genomes_project 2 22774457 22775600 + MGP_CASTEiJ_P0052909 Rnf208 protein_coding protein_coding MGP_CASTEiJ_T0052910.1 MGP_CASTEiJ_G0024627.1 mouse_genomes_project 2 22775131 22776464 + MGP_CASTEiJ_P0052910 Rnf208 protein_coding protein_coding MGP_CASTEiJ_T0052911.1 MGP_CASTEiJ_G0024627.1 mouse_genomes_project 2 22775140 22776465 + MGP_CASTEiJ_P0052911 Rnf208 protein_coding protein_coding MGP_CASTEiJ_T0010205.1 MGP_CASTEiJ_G0008393.1 mouse_genomes_project 2 179321377 179321459 - Mir298 miRNA miRNA MGP_CASTEiJ_T0102235.1 MGP_CASTEiJ_G0038960.1 mouse_genomes_project 2 88348560 88348873 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0056543.1 MGP_CASTEiJ_G0025445.1 mouse_genomes_project 2 112921455 112922028 + MGP_CASTEiJ_P0056543 protein_coding protein_coding MGP_CASTEiJ_T0057119.1 MGP_CASTEiJ_G0025576.1 mouse_genomes_project 2 123421905 123426150 + MGP_CASTEiJ_P0057119 Serf2 protein_coding protein_coding MGP_CASTEiJ_T0057120.1 MGP_CASTEiJ_G0025576.1 mouse_genomes_project 2 123422078 123425735 + Serf2 protein_coding retained_intron MGP_CASTEiJ_T0057121.1 MGP_CASTEiJ_G0025576.1 mouse_genomes_project 2 123422088 123424020 + MGP_CASTEiJ_P0057121 Serf2 protein_coding protein_coding MGP_CASTEiJ_T0057122.1 MGP_CASTEiJ_G0025576.1 mouse_genomes_project 2 123422093 123423784 + MGP_CASTEiJ_P0057122 Serf2 protein_coding protein_coding MGP_CASTEiJ_T0057123.1 MGP_CASTEiJ_G0025576.1 mouse_genomes_project 2 123422122 123431068 + MGP_CASTEiJ_P0057123 Serf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057124.1 MGP_CASTEiJ_G0025576.1 mouse_genomes_project 2 123422122 123431066 + MGP_CASTEiJ_P0057124 Serf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059584.1 MGP_CASTEiJ_G0026152.1 mouse_genomes_project 2 181139806 181143081 - MGP_CASTEiJ_P0059584 Ppp1r3d protein_coding protein_coding MGP_CASTEiJ_T0057072.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123271778 123314175 - MGP_CASTEiJ_P0057072 Ppip5k1 protein_coding protein_coding MGP_CASTEiJ_T0057073.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123271778 123318419 - MGP_CASTEiJ_P0057073 Ppip5k1 protein_coding protein_coding MGP_CASTEiJ_T0057074.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123271778 123318422 - MGP_CASTEiJ_P0057074 Ppip5k1 protein_coding protein_coding MGP_CASTEiJ_T0057075.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123272100 123314143 - MGP_CASTEiJ_P0057075 Ppip5k1 protein_coding protein_coding MGP_CASTEiJ_T0057076.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123272106 123318485 - MGP_CASTEiJ_P0057076 Ppip5k1 protein_coding protein_coding MGP_CASTEiJ_T0057077.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123285320 123300373 - MGP_CASTEiJ_P0057077 Ppip5k1 protein_coding protein_coding MGP_CASTEiJ_T0057078.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123285355 123297978 - MGP_CASTEiJ_P0057078 Ppip5k1 protein_coding protein_coding MGP_CASTEiJ_T0057079.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123285433 123299955 - MGP_CASTEiJ_P0057079 Ppip5k1 protein_coding protein_coding MGP_CASTEiJ_T0057080.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123291305 123300369 - MGP_CASTEiJ_P0057080 Ppip5k1 protein_coding protein_coding MGP_CASTEiJ_T0057081.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123292084 123300245 - Ppip5k1 protein_coding retained_intron MGP_CASTEiJ_T0057082.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123295598 123318166 - Ppip5k1 protein_coding retained_intron MGP_CASTEiJ_T0057083.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123297718 123305183 - Ppip5k1 protein_coding retained_intron MGP_CASTEiJ_T0057084.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123303570 123318400 - Ppip5k1 protein_coding retained_intron MGP_CASTEiJ_T0057085.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123306731 123311952 - MGP_CASTEiJ_P0057085 Ppip5k1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057086.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123309769 123318419 - Ppip5k1 protein_coding retained_intron MGP_CASTEiJ_T0057087.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123310188 123318164 - Ppip5k1 protein_coding retained_intron MGP_CASTEiJ_T0057088.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123311352 123318161 - Ppip5k1 protein_coding retained_intron MGP_CASTEiJ_T0057089.1 MGP_CASTEiJ_G0025569.1 mouse_genomes_project 2 123313634 123318373 - MGP_CASTEiJ_P0057089 Ppip5k1 protein_coding protein_coding MGP_CASTEiJ_T0055800.1 MGP_CASTEiJ_G0025283.1 mouse_genomes_project 2 90260591 90261536 - MGP_CASTEiJ_P0055800 Olfr1240 protein_coding protein_coding MGP_CASTEiJ_T0007086.1 MGP_CASTEiJ_G0005826.1 mouse_genomes_project 2 98091570 98194059 - 4930445B16Rik lincRNA lincRNA MGP_CASTEiJ_T0055313.1 MGP_CASTEiJ_G0025056.1 mouse_genomes_project 2 75899233 75916222 - MGP_CASTEiJ_P0055313 Pde11a protein_coding protein_coding MGP_CASTEiJ_T0055314.1 MGP_CASTEiJ_G0025056.1 mouse_genomes_project 2 75899987 76272133 - MGP_CASTEiJ_P0055314 Pde11a protein_coding protein_coding MGP_CASTEiJ_T0055315.1 MGP_CASTEiJ_G0025056.1 mouse_genomes_project 2 75938960 76143544 - MGP_CASTEiJ_P0055315 Pde11a protein_coding protein_coding MGP_CASTEiJ_T0000982.1 MGP_CASTEiJ_G0000918.1 mouse_genomes_project 2 4066283 4078037 + TEC TEC MGP_CASTEiJ_T0055775.1 MGP_CASTEiJ_G0025262.1 mouse_genomes_project 2 89816747 89817686 - MGP_CASTEiJ_P0055775 Olfr1215 protein_coding protein_coding MGP_CASTEiJ_T0059434.1 MGP_CASTEiJ_G0026107.1 mouse_genomes_project 2 174198598 174204904 - MGP_CASTEiJ_P0059434 protein_coding protein_coding MGP_CASTEiJ_T0099646.1 MGP_CASTEiJ_G0036559.1 mouse_genomes_project 2 86279332 86279512 - Gm24037 snRNA snRNA MGP_CASTEiJ_T0059119.1 MGP_CASTEiJ_G0026050.1 mouse_genomes_project 2 168966669 168970355 - Acot8 protein_coding retained_intron MGP_CASTEiJ_T0059120.1 MGP_CASTEiJ_G0026050.1 mouse_genomes_project 2 168966669 168978095 - MGP_CASTEiJ_P0059120 Acot8 protein_coding protein_coding MGP_CASTEiJ_T0059121.1 MGP_CASTEiJ_G0026050.1 mouse_genomes_project 2 168966669 168978095 - MGP_CASTEiJ_P0059121 Acot8 protein_coding protein_coding MGP_CASTEiJ_T0059122.1 MGP_CASTEiJ_G0026050.1 mouse_genomes_project 2 168969673 168978094 - MGP_CASTEiJ_P0059122 Acot8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059123.1 MGP_CASTEiJ_G0026050.1 mouse_genomes_project 2 168973226 168978035 - Acot8 protein_coding retained_intron MGP_CASTEiJ_T0007125.1 MGP_CASTEiJ_G0005857.1 mouse_genomes_project 2 119901239 119901836 - Gm29233 lincRNA lincRNA MGP_CASTEiJ_T0098582.1 MGP_CASTEiJ_G0035513.1 mouse_genomes_project 2 168281076 168281194 - n-R5s207 rRNA rRNA MGP_CASTEiJ_T0007042.1 MGP_CASTEiJ_G0005790.1 mouse_genomes_project 2 73240321 73259840 + Gm13708 lincRNA lincRNA MGP_CASTEiJ_T0059428.1 MGP_CASTEiJ_G0026106.1 mouse_genomes_project 2 173443156 173513117 - MGP_CASTEiJ_P0059428 Zfp64 protein_coding protein_coding MGP_CASTEiJ_T0059429.1 MGP_CASTEiJ_G0026106.1 mouse_genomes_project 2 173456697 173466198 - MGP_CASTEiJ_P0059429 Zfp64 protein_coding protein_coding MGP_CASTEiJ_T0059430.1 MGP_CASTEiJ_G0026106.1 mouse_genomes_project 2 173478433 173512802 - MGP_CASTEiJ_P0059430 Zfp64 protein_coding protein_coding MGP_CASTEiJ_T0059431.1 MGP_CASTEiJ_G0026106.1 mouse_genomes_project 2 173478489 173512683 - MGP_CASTEiJ_P0059431 Zfp64 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059432.1 MGP_CASTEiJ_G0026106.1 mouse_genomes_project 2 173489694 173512819 - MGP_CASTEiJ_P0059432 Zfp64 protein_coding protein_coding MGP_CASTEiJ_T0059433.1 MGP_CASTEiJ_G0026106.1 mouse_genomes_project 2 173508091 173512796 - Zfp64 protein_coding retained_intron MGP_CASTEiJ_T0055539.1 MGP_CASTEiJ_G0025095.1 mouse_genomes_project 2 84935109 84942608 - MGP_CASTEiJ_P0055539 Tmx2 protein_coding protein_coding MGP_CASTEiJ_T0055540.1 MGP_CASTEiJ_G0025095.1 mouse_genomes_project 2 84935109 84941898 - MGP_CASTEiJ_P0055540 Tmx2 protein_coding protein_coding MGP_CASTEiJ_T0055541.1 MGP_CASTEiJ_G0025095.1 mouse_genomes_project 2 84935110 84941836 - MGP_CASTEiJ_P0055541 Tmx2 protein_coding protein_coding MGP_CASTEiJ_T0055542.1 MGP_CASTEiJ_G0025095.1 mouse_genomes_project 2 84936056 84941829 - Tmx2 protein_coding processed_transcript MGP_CASTEiJ_T0055543.1 MGP_CASTEiJ_G0025095.1 mouse_genomes_project 2 84936134 84941823 - Tmx2 protein_coding processed_transcript MGP_CASTEiJ_T0055544.1 MGP_CASTEiJ_G0025095.1 mouse_genomes_project 2 84939891 84942920 - MGP_CASTEiJ_P0055544 Tmx2 protein_coding protein_coding MGP_CASTEiJ_T0102198.1 MGP_CASTEiJ_G0038923.1 mouse_genomes_project 2 9158220 9167956 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0007243.1 MGP_CASTEiJ_G0005955.1 mouse_genomes_project 2 177151968 177154336 + Gm14275 lincRNA lincRNA MGP_CASTEiJ_T0055763.1 MGP_CASTEiJ_G0025252.1 mouse_genomes_project 2 89530782 89533132 - MGP_CASTEiJ_P0055763 Olfr1200 protein_coding protein_coding MGP_CASTEiJ_T0013236.1 MGP_CASTEiJ_G0011399.1 mouse_genomes_project 2 88108339 88109189 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057300.1 MGP_CASTEiJ_G0025618.1 mouse_genomes_project 2 128383696 128402949 + MGP_CASTEiJ_P0057300 Dtwd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099658.1 MGP_CASTEiJ_G0036571.1 mouse_genomes_project 2 130403902 130404039 + Gm23101 snRNA snRNA MGP_CASTEiJ_T0052550.1 MGP_CASTEiJ_G0024564.1 mouse_genomes_project 2 13741631 14158599 + MGP_CASTEiJ_P0052550 Plxdc2 protein_coding protein_coding MGP_CASTEiJ_T0052551.1 MGP_CASTEiJ_G0024564.1 mouse_genomes_project 2 13742214 14154420 + MGP_CASTEiJ_P0052551 Plxdc2 protein_coding protein_coding MGP_CASTEiJ_T0052552.1 MGP_CASTEiJ_G0024564.1 mouse_genomes_project 2 13742444 14154588 + MGP_CASTEiJ_P0052552 Plxdc2 protein_coding protein_coding MGP_CASTEiJ_T0052553.1 MGP_CASTEiJ_G0024564.1 mouse_genomes_project 2 14039123 14154421 + Plxdc2 protein_coding processed_transcript MGP_CASTEiJ_T0099645.1 MGP_CASTEiJ_G0036558.1 mouse_genomes_project 2 84973328 84973429 + Gm27942 snRNA snRNA MGP_CASTEiJ_T0058418.1 MGP_CASTEiJ_G0025897.1 mouse_genomes_project 2 158077791 158079292 + MGP_CASTEiJ_P0058418 Actl10 protein_coding protein_coding MGP_CASTEiJ_T0053037.1 MGP_CASTEiJ_G0024647.1 mouse_genomes_project 2 23041959 23045009 - MGP_CASTEiJ_P0053037 Lcn12 protein_coding protein_coding MGP_CASTEiJ_T0053038.1 MGP_CASTEiJ_G0024647.1 mouse_genomes_project 2 23041961 23044530 - MGP_CASTEiJ_P0053038 Lcn12 protein_coding protein_coding MGP_CASTEiJ_T0010073.1 MGP_CASTEiJ_G0008261.1 mouse_genomes_project 2 7746087 7746190 + Gm22239 miRNA miRNA MGP_CASTEiJ_T0054230.1 MGP_CASTEiJ_G0024840.1 mouse_genomes_project 2 33081537 33089249 + Cutal protein_coding retained_intron MGP_CASTEiJ_T0054231.1 MGP_CASTEiJ_G0024840.1 mouse_genomes_project 2 33081604 33097281 + MGP_CASTEiJ_P0054231 Cutal protein_coding protein_coding MGP_CASTEiJ_T0054590.1 MGP_CASTEiJ_G0024920.1 mouse_genomes_project 2 48338203 48506274 + MGP_CASTEiJ_P0054590 Kif5c protein_coding protein_coding MGP_CASTEiJ_T0054591.1 MGP_CASTEiJ_G0024920.1 mouse_genomes_project 2 48426245 48458789 + MGP_CASTEiJ_P0054591 Kif5c protein_coding protein_coding MGP_CASTEiJ_T0054592.1 MGP_CASTEiJ_G0024920.1 mouse_genomes_project 2 48451103 48465346 + Kif5c protein_coding processed_transcript MGP_CASTEiJ_T0054593.1 MGP_CASTEiJ_G0024920.1 mouse_genomes_project 2 48462375 48465337 + Kif5c protein_coding processed_transcript MGP_CASTEiJ_T0054594.1 MGP_CASTEiJ_G0024920.1 mouse_genomes_project 2 48474335 48488693 + Kif5c protein_coding processed_transcript MGP_CASTEiJ_T0054595.1 MGP_CASTEiJ_G0024920.1 mouse_genomes_project 2 48482114 48490226 + Kif5c protein_coding processed_transcript MGP_CASTEiJ_T0058391.1 MGP_CASTEiJ_G0025892.1 mouse_genomes_project 2 157843323 157880287 - MGP_CASTEiJ_P0058391 Cdk5rap1 protein_coding protein_coding MGP_CASTEiJ_T0058392.1 MGP_CASTEiJ_G0025892.1 mouse_genomes_project 2 157843329 157879866 - MGP_CASTEiJ_P0058392 Cdk5rap1 protein_coding protein_coding MGP_CASTEiJ_T0058393.1 MGP_CASTEiJ_G0025892.1 mouse_genomes_project 2 157850416 157879908 - Cdk5rap1 protein_coding processed_transcript MGP_CASTEiJ_T0058394.1 MGP_CASTEiJ_G0025892.1 mouse_genomes_project 2 157860695 157864417 - Cdk5rap1 protein_coding retained_intron MGP_CASTEiJ_T0058395.1 MGP_CASTEiJ_G0025892.1 mouse_genomes_project 2 157866081 157879878 - MGP_CASTEiJ_P0058395 Cdk5rap1 protein_coding protein_coding MGP_CASTEiJ_T0058396.1 MGP_CASTEiJ_G0025892.1 mouse_genomes_project 2 157872972 157877920 - Cdk5rap1 protein_coding processed_transcript MGP_CASTEiJ_T0058397.1 MGP_CASTEiJ_G0025892.1 mouse_genomes_project 2 157877812 157879838 - Cdk5rap1 protein_coding processed_transcript MGP_CASTEiJ_T0053136.1 MGP_CASTEiJ_G0024673.1 mouse_genomes_project 2 23585767 23594582 - Ubac1 protein_coding processed_transcript MGP_CASTEiJ_T0053137.1 MGP_CASTEiJ_G0024673.1 mouse_genomes_project 2 23585767 23609612 - MGP_CASTEiJ_P0053137 Ubac1 protein_coding protein_coding MGP_CASTEiJ_T0053138.1 MGP_CASTEiJ_G0024673.1 mouse_genomes_project 2 23586030 23597108 - Ubac1 protein_coding processed_transcript MGP_CASTEiJ_T0053139.1 MGP_CASTEiJ_G0024673.1 mouse_genomes_project 2 23592066 23604170 - MGP_CASTEiJ_P0053139 Ubac1 protein_coding protein_coding MGP_CASTEiJ_T0053140.1 MGP_CASTEiJ_G0024673.1 mouse_genomes_project 2 23593188 23609397 - MGP_CASTEiJ_P0053140 Ubac1 protein_coding protein_coding MGP_CASTEiJ_T0053141.1 MGP_CASTEiJ_G0024673.1 mouse_genomes_project 2 23596779 23598821 - Ubac1 protein_coding processed_transcript MGP_CASTEiJ_T0053142.1 MGP_CASTEiJ_G0024673.1 mouse_genomes_project 2 23598402 23605336 - Ubac1 protein_coding processed_transcript MGP_CASTEiJ_T0053143.1 MGP_CASTEiJ_G0024673.1 mouse_genomes_project 2 23602761 23609431 - Ubac1 protein_coding processed_transcript MGP_CASTEiJ_T0053144.1 MGP_CASTEiJ_G0024673.1 mouse_genomes_project 2 23603817 23609467 - Ubac1 protein_coding processed_transcript MGP_CASTEiJ_T0013073.1 MGP_CASTEiJ_G0011236.1 mouse_genomes_project 2 26534078 26534297 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052183.1 MGP_CASTEiJ_G0024507.1 mouse_genomes_project 2 491342 510989 + Cdnf protein_coding processed_transcript MGP_CASTEiJ_T0052184.1 MGP_CASTEiJ_G0024507.1 mouse_genomes_project 2 491377 513384 + MGP_CASTEiJ_P0052184 Cdnf protein_coding protein_coding MGP_CASTEiJ_T0052185.1 MGP_CASTEiJ_G0024507.1 mouse_genomes_project 2 492196 511067 + Cdnf protein_coding processed_transcript MGP_CASTEiJ_T0058410.1 MGP_CASTEiJ_G0025895.1 mouse_genomes_project 2 158070343 158084861 - MGP_CASTEiJ_P0058410 Necab3 protein_coding protein_coding MGP_CASTEiJ_T0058411.1 MGP_CASTEiJ_G0025895.1 mouse_genomes_project 2 158070343 158084876 - MGP_CASTEiJ_P0058411 Necab3 protein_coding protein_coding MGP_CASTEiJ_T0058412.1 MGP_CASTEiJ_G0025895.1 mouse_genomes_project 2 158070989 158072743 - Necab3 protein_coding retained_intron MGP_CASTEiJ_T0058413.1 MGP_CASTEiJ_G0025895.1 mouse_genomes_project 2 158072994 158084900 - MGP_CASTEiJ_P0058413 Necab3 protein_coding protein_coding MGP_CASTEiJ_T0058415.1 MGP_CASTEiJ_G0025895.1 mouse_genomes_project 2 158073089 158084854 - Necab3 protein_coding processed_transcript MGP_CASTEiJ_T0058419.1 MGP_CASTEiJ_G0025895.1 mouse_genomes_project 2 158080305 158084862 - Necab3 protein_coding retained_intron MGP_CASTEiJ_T0058420.1 MGP_CASTEiJ_G0025895.1 mouse_genomes_project 2 158080683 158083288 - Necab3 protein_coding retained_intron MGP_CASTEiJ_T0052752.1 MGP_CASTEiJ_G0024603.1 mouse_genomes_project 2 21719597 21725074 + MGP_CASTEiJ_P0052752 Il1f5 protein_coding protein_coding MGP_CASTEiJ_T0052753.1 MGP_CASTEiJ_G0024603.1 mouse_genomes_project 2 21719597 21726066 + MGP_CASTEiJ_P0052753 Il1f5 protein_coding protein_coding MGP_CASTEiJ_T0052754.1 MGP_CASTEiJ_G0024603.1 mouse_genomes_project 2 21719657 21723553 + MGP_CASTEiJ_P0052754 Il1f5 protein_coding protein_coding MGP_CASTEiJ_T0052755.1 MGP_CASTEiJ_G0024603.1 mouse_genomes_project 2 21719914 21721720 + Il1f5 protein_coding retained_intron MGP_CASTEiJ_T0052756.1 MGP_CASTEiJ_G0024603.1 mouse_genomes_project 2 21719914 21724721 + MGP_CASTEiJ_P0052756 Il1f5 protein_coding protein_coding MGP_CASTEiJ_T0052757.1 MGP_CASTEiJ_G0024603.1 mouse_genomes_project 2 21719915 21724715 + MGP_CASTEiJ_P0052757 Il1f5 protein_coding protein_coding MGP_CASTEiJ_T0052758.1 MGP_CASTEiJ_G0024603.1 mouse_genomes_project 2 21719925 21724274 + Il1f5 protein_coding processed_transcript MGP_CASTEiJ_T0102223.1 MGP_CASTEiJ_G0038948.1 mouse_genomes_project 2 86546208 86547165 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0056551.1 MGP_CASTEiJ_G0025453.1 mouse_genomes_project 2 113166081 113167020 - MGP_CASTEiJ_P0056551 protein_coding protein_coding MGP_CASTEiJ_T0054628.1 MGP_CASTEiJ_G0024929.1 mouse_genomes_project 2 50932499 50987270 + MGP_CASTEiJ_P0054628 Rif1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054629.1 MGP_CASTEiJ_G0024929.1 mouse_genomes_project 2 50932559 50982953 + MGP_CASTEiJ_P0054629 Rif1 protein_coding protein_coding MGP_CASTEiJ_T0054630.1 MGP_CASTEiJ_G0024929.1 mouse_genomes_project 2 50932564 50982955 + MGP_CASTEiJ_P0054630 Rif1 protein_coding protein_coding MGP_CASTEiJ_T0054631.1 MGP_CASTEiJ_G0024929.1 mouse_genomes_project 2 50932794 50935946 + Rif1 protein_coding processed_transcript MGP_CASTEiJ_T0054632.1 MGP_CASTEiJ_G0024929.1 mouse_genomes_project 2 50932825 50983691 + MGP_CASTEiJ_P0054632 Rif1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054633.1 MGP_CASTEiJ_G0024929.1 mouse_genomes_project 2 50949289 50967341 + Rif1 protein_coding processed_transcript MGP_CASTEiJ_T0054634.1 MGP_CASTEiJ_G0024929.1 mouse_genomes_project 2 50952866 50958106 + Rif1 protein_coding processed_transcript MGP_CASTEiJ_T0054635.1 MGP_CASTEiJ_G0024929.1 mouse_genomes_project 2 50971584 50982627 + Rif1 protein_coding processed_transcript MGP_CASTEiJ_T0054636.1 MGP_CASTEiJ_G0024929.1 mouse_genomes_project 2 50972061 50982680 + Rif1 protein_coding processed_transcript MGP_CASTEiJ_T0054637.1 MGP_CASTEiJ_G0024929.1 mouse_genomes_project 2 50972733 50982953 + Rif1 protein_coding processed_transcript MGP_CASTEiJ_T0056432.1 MGP_CASTEiJ_G0025413.1 mouse_genomes_project 2 106538387 106702228 + MGP_CASTEiJ_P0056432 Them7 protein_coding protein_coding MGP_CASTEiJ_T0056433.1 MGP_CASTEiJ_G0025413.1 mouse_genomes_project 2 106538409 106701466 + Them7 protein_coding processed_transcript MGP_CASTEiJ_T0057865.1 MGP_CASTEiJ_G0025743.1 mouse_genomes_project 2 141096203 141129076 + MGP_CASTEiJ_P0057865 Btbd3 protein_coding protein_coding MGP_CASTEiJ_T0057866.1 MGP_CASTEiJ_G0025743.1 mouse_genomes_project 2 141096300 141370235 + Btbd3 protein_coding processed_transcript MGP_CASTEiJ_T0057867.1 MGP_CASTEiJ_G0025743.1 mouse_genomes_project 2 141096308 141413677 + Btbd3 protein_coding processed_transcript MGP_CASTEiJ_T0057868.1 MGP_CASTEiJ_G0025743.1 mouse_genomes_project 2 141119680 141129076 + MGP_CASTEiJ_P0057868 Btbd3 protein_coding protein_coding MGP_CASTEiJ_T0057869.1 MGP_CASTEiJ_G0025743.1 mouse_genomes_project 2 141121489 141130351 + MGP_CASTEiJ_P0057869 Btbd3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0017095.1 MGP_CASTEiJ_G0014772.1 mouse_genomes_project 2 119625013 119887840 - Gm13986 processed_transcript processed_transcript MGP_CASTEiJ_T0017096.1 MGP_CASTEiJ_G0014772.1 mouse_genomes_project 2 119845032 119887729 - Gm13986 processed_transcript processed_transcript MGP_CASTEiJ_T0010121.1 MGP_CASTEiJ_G0008309.1 mouse_genomes_project 2 30722290 30722355 + miRNA miRNA MGP_CASTEiJ_T0053298.1 MGP_CASTEiJ_G0024698.1 mouse_genomes_project 2 24540315 24544140 + MGP_CASTEiJ_P0053298 Surf2 protein_coding protein_coding MGP_CASTEiJ_T0053299.1 MGP_CASTEiJ_G0024698.1 mouse_genomes_project 2 24540329 24544129 + Surf2 protein_coding processed_transcript MGP_CASTEiJ_T0053300.1 MGP_CASTEiJ_G0024698.1 mouse_genomes_project 2 24540617 24543778 + Surf2 protein_coding processed_transcript MGP_CASTEiJ_T0053301.1 MGP_CASTEiJ_G0024698.1 mouse_genomes_project 2 24540617 24544123 + Surf2 protein_coding retained_intron MGP_CASTEiJ_T0053302.1 MGP_CASTEiJ_G0024698.1 mouse_genomes_project 2 24540761 24543910 + Surf2 protein_coding processed_transcript MGP_CASTEiJ_T0053303.1 MGP_CASTEiJ_G0024698.1 mouse_genomes_project 2 24541376 24543792 + Surf2 protein_coding processed_transcript MGP_CASTEiJ_T0013190.1 MGP_CASTEiJ_G0011353.1 mouse_genomes_project 2 74747193 74747831 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013016.1 MGP_CASTEiJ_G0011179.1 mouse_genomes_project 2 5775337 5775884 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003994.1 MGP_CASTEiJ_G0003542.1 mouse_genomes_project 2 150551200 150552070 - AI646519 antisense antisense MGP_CASTEiJ_T0003906.1 MGP_CASTEiJ_G0003483.1 mouse_genomes_project 2 89744285 89751520 - Gm13763 antisense antisense MGP_CASTEiJ_T0053506.1 MGP_CASTEiJ_G0024740.1 mouse_genomes_project 2 27555584 30330044 + Golga2 protein_coding retained_intron MGP_CASTEiJ_T0053925.1 MGP_CASTEiJ_G0024740.1 mouse_genomes_project 2 30308120 30330046 + MGP_CASTEiJ_P0053925 Golga2 protein_coding protein_coding MGP_CASTEiJ_T0053926.1 MGP_CASTEiJ_G0024740.1 mouse_genomes_project 2 30308135 30330055 + MGP_CASTEiJ_P0053926 Golga2 protein_coding protein_coding MGP_CASTEiJ_T0053927.1 MGP_CASTEiJ_G0024740.1 mouse_genomes_project 2 30308215 30325094 + MGP_CASTEiJ_P0053927 Golga2 protein_coding protein_coding MGP_CASTEiJ_T0053928.1 MGP_CASTEiJ_G0024740.1 mouse_genomes_project 2 30308231 30330055 + MGP_CASTEiJ_P0053928 Golga2 protein_coding protein_coding MGP_CASTEiJ_T0053929.1 MGP_CASTEiJ_G0024740.1 mouse_genomes_project 2 30308233 30321462 + MGP_CASTEiJ_P0053929 Golga2 protein_coding protein_coding MGP_CASTEiJ_T0053930.1 MGP_CASTEiJ_G0024740.1 mouse_genomes_project 2 30308237 30324335 + MGP_CASTEiJ_P0053930 Golga2 protein_coding protein_coding MGP_CASTEiJ_T0053931.1 MGP_CASTEiJ_G0024740.1 mouse_genomes_project 2 30320940 30321423 + Golga2 protein_coding retained_intron MGP_CASTEiJ_T0053932.1 MGP_CASTEiJ_G0024740.1 mouse_genomes_project 2 30323346 30325084 + Golga2 protein_coding retained_intron MGP_CASTEiJ_T0056565.1 MGP_CASTEiJ_G0025467.1 mouse_genomes_project 2 113738521 113749494 + MGP_CASTEiJ_P0056565 Lpcat4 protein_coding protein_coding MGP_CASTEiJ_T0056566.1 MGP_CASTEiJ_G0025467.1 mouse_genomes_project 2 113740536 113744314 + Lpcat4 protein_coding processed_transcript MGP_CASTEiJ_T0056567.1 MGP_CASTEiJ_G0025467.1 mouse_genomes_project 2 113741011 113741801 + Lpcat4 protein_coding processed_transcript MGP_CASTEiJ_T0056568.1 MGP_CASTEiJ_G0025467.1 mouse_genomes_project 2 113744838 113749481 + Lpcat4 protein_coding processed_transcript MGP_CASTEiJ_T0010170.1 MGP_CASTEiJ_G0008358.1 mouse_genomes_project 2 124729691 124729770 + Mir147 miRNA miRNA MGP_CASTEiJ_T0100880.1 MGP_CASTEiJ_G0037793.1 mouse_genomes_project 2 60554269 60554398 + Gm22338 snoRNA snoRNA MGP_CASTEiJ_T0100920.1 MGP_CASTEiJ_G0037833.1 mouse_genomes_project 2 161497847 161497981 - Gm25407 snoRNA snoRNA MGP_CASTEiJ_T0054138.1 MGP_CASTEiJ_G0024827.1 mouse_genomes_project 2 31233755 31477159 - MGP_CASTEiJ_P0054138 Ralgps1 protein_coding protein_coding MGP_CASTEiJ_T0054139.1 MGP_CASTEiJ_G0024827.1 mouse_genomes_project 2 31233759 31477211 - MGP_CASTEiJ_P0054139 Ralgps1 protein_coding protein_coding MGP_CASTEiJ_T0054140.1 MGP_CASTEiJ_G0024827.1 mouse_genomes_project 2 31233759 31477216 - MGP_CASTEiJ_P0054140 Ralgps1 protein_coding protein_coding MGP_CASTEiJ_T0054141.1 MGP_CASTEiJ_G0024827.1 mouse_genomes_project 2 31237311 31477208 - MGP_CASTEiJ_P0054141 Ralgps1 protein_coding protein_coding MGP_CASTEiJ_T0054142.1 MGP_CASTEiJ_G0024827.1 mouse_genomes_project 2 31243650 31258232 - Ralgps1 protein_coding processed_transcript MGP_CASTEiJ_T0054147.1 MGP_CASTEiJ_G0024827.1 mouse_genomes_project 2 31359687 31477200 - Ralgps1 protein_coding retained_intron MGP_CASTEiJ_T0003948.1 MGP_CASTEiJ_G0003511.1 mouse_genomes_project 2 128919591 128927300 + Gm27003 antisense antisense MGP_CASTEiJ_T0006976.1 MGP_CASTEiJ_G0005737.1 mouse_genomes_project 2 23738904 23739902 + 1810012K08Rik lincRNA lincRNA MGP_CASTEiJ_T0055565.1 MGP_CASTEiJ_G0025103.1 mouse_genomes_project 2 85096171 85107637 - MGP_CASTEiJ_P0055565 Smtnl1 protein_coding protein_coding MGP_CASTEiJ_T0058235.1 MGP_CASTEiJ_G0025845.1 mouse_genomes_project 2 155856680 155858065 - MGP_CASTEiJ_P0058235 Defb29 protein_coding protein_coding MGP_CASTEiJ_T0017136.1 MGP_CASTEiJ_G0014791.1 mouse_genomes_project 2 153810647 153814691 + Gm14123 processed_transcript processed_transcript MGP_CASTEiJ_T0013193.1 MGP_CASTEiJ_G0011356.1 mouse_genomes_project 2 77227063 77227420 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059400.1 MGP_CASTEiJ_G0026102.1 mouse_genomes_project 2 172725816 172735203 - MGP_CASTEiJ_P0059400 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059401.1 MGP_CASTEiJ_G0026102.1 mouse_genomes_project 2 172733318 172745922 - MGP_CASTEiJ_P0059401 protein_coding protein_coding MGP_CASTEiJ_T0058611.1 MGP_CASTEiJ_G0025935.1 mouse_genomes_project 2 159718579 159758646 - MGP_CASTEiJ_P0058611 Gm28036 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058612.1 MGP_CASTEiJ_G0025935.1 mouse_genomes_project 2 159718579 159744905 - MGP_CASTEiJ_P0058612 Gm28036 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058628.1 MGP_CASTEiJ_G0025935.1 mouse_genomes_project 2 159725707 159771814 - MGP_CASTEiJ_P0058628 Gm28036 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058629.1 MGP_CASTEiJ_G0025935.1 mouse_genomes_project 2 159725707 159771814 - MGP_CASTEiJ_P0058629 Gm28036 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058630.1 MGP_CASTEiJ_G0025935.1 mouse_genomes_project 2 159725707 159771814 - MGP_CASTEiJ_P0058630 Gm28036 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058631.1 MGP_CASTEiJ_G0025935.1 mouse_genomes_project 2 159725869 159758671 - MGP_CASTEiJ_P0058631 Gm28036 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058632.1 MGP_CASTEiJ_G0025935.1 mouse_genomes_project 2 159725875 159743748 - MGP_CASTEiJ_P0058632 Gm28036 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058633.1 MGP_CASTEiJ_G0025935.1 mouse_genomes_project 2 159726202 159758676 - MGP_CASTEiJ_P0058633 Gm28036 protein_coding protein_coding MGP_CASTEiJ_T0058924.1 MGP_CASTEiJ_G0025988.1 mouse_genomes_project 2 164864699 164870569 - MGP_CASTEiJ_P0058924 Emilin3 protein_coding protein_coding MGP_CASTEiJ_T0058925.1 MGP_CASTEiJ_G0025988.1 mouse_genomes_project 2 164864700 164870580 - MGP_CASTEiJ_P0058925 Emilin3 protein_coding protein_coding MGP_CASTEiJ_T0100898.1 MGP_CASTEiJ_G0037811.1 mouse_genomes_project 2 113340306 113340438 - Gm26421 snoRNA snoRNA MGP_CASTEiJ_T0010100.1 MGP_CASTEiJ_G0008288.1 mouse_genomes_project 2 22583172 22583239 - Gm24328 miRNA miRNA MGP_CASTEiJ_T0057726.1 MGP_CASTEiJ_G0025714.1 mouse_genomes_project 2 134475992 134492069 + MGP_CASTEiJ_P0057726 Prnp protein_coding protein_coding MGP_CASTEiJ_T0057589.1 MGP_CASTEiJ_G0025687.1 mouse_genomes_project 2 133000012 133001662 + Mrps26 protein_coding retained_intron MGP_CASTEiJ_T0057590.1 MGP_CASTEiJ_G0025687.1 mouse_genomes_project 2 133000012 133004750 + MGP_CASTEiJ_P0057590 Mrps26 protein_coding protein_coding MGP_CASTEiJ_T0011184.1 MGP_CASTEiJ_G0009372.1 mouse_genomes_project 2 133154997 133155366 - Gm24893 misc_RNA misc_RNA MGP_CASTEiJ_T0058183.1 MGP_CASTEiJ_G0025824.1 mouse_genomes_project 2 154982458 155010753 - MGP_CASTEiJ_P0058183 Psmf1 protein_coding protein_coding MGP_CASTEiJ_T0058184.1 MGP_CASTEiJ_G0025824.1 mouse_genomes_project 2 154982708 154987639 - Psmf1 protein_coding retained_intron MGP_CASTEiJ_T0058185.1 MGP_CASTEiJ_G0025824.1 mouse_genomes_project 2 154982708 155010736 - MGP_CASTEiJ_P0058185 Psmf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058186.1 MGP_CASTEiJ_G0025824.1 mouse_genomes_project 2 154984909 155013611 - MGP_CASTEiJ_P0058186 Psmf1 protein_coding protein_coding MGP_CASTEiJ_T0058187.1 MGP_CASTEiJ_G0025824.1 mouse_genomes_project 2 154986129 154997637 - Psmf1 protein_coding retained_intron MGP_CASTEiJ_T0058188.1 MGP_CASTEiJ_G0025824.1 mouse_genomes_project 2 154995255 155010736 - Psmf1 protein_coding retained_intron MGP_CASTEiJ_T0058201.1 MGP_CASTEiJ_G0025832.1 mouse_genomes_project 2 155515060 155563390 + MGP_CASTEiJ_P0058201 Gm10031 protein_coding protein_coding MGP_CASTEiJ_T0058202.1 MGP_CASTEiJ_G0025832.1 mouse_genomes_project 2 155515158 155557663 + Gm10031 protein_coding retained_intron MGP_CASTEiJ_T0058203.1 MGP_CASTEiJ_G0025832.1 mouse_genomes_project 2 155515178 155551600 + MGP_CASTEiJ_P0058203 Gm10031 protein_coding protein_coding MGP_CASTEiJ_T0058204.1 MGP_CASTEiJ_G0025832.1 mouse_genomes_project 2 155515190 155548194 + MGP_CASTEiJ_P0058204 Gm10031 protein_coding protein_coding MGP_CASTEiJ_T0058205.1 MGP_CASTEiJ_G0025832.1 mouse_genomes_project 2 155515195 155543621 + Gm10031 protein_coding retained_intron MGP_CASTEiJ_T0059523.1 MGP_CASTEiJ_G0026139.1 mouse_genomes_project 2 179126666 179142811 + MGP_CASTEiJ_P0059523 Stx16 protein_coding protein_coding MGP_CASTEiJ_T0059524.1 MGP_CASTEiJ_G0026139.1 mouse_genomes_project 2 179126676 179141111 + MGP_CASTEiJ_P0059524 Stx16 protein_coding protein_coding MGP_CASTEiJ_T0059525.1 MGP_CASTEiJ_G0026139.1 mouse_genomes_project 2 179126680 179143904 + MGP_CASTEiJ_P0059525 Stx16 protein_coding protein_coding MGP_CASTEiJ_T0059526.1 MGP_CASTEiJ_G0026139.1 mouse_genomes_project 2 179127280 179150132 + MGP_CASTEiJ_P0059526 Stx16 protein_coding protein_coding MGP_CASTEiJ_T0059527.1 MGP_CASTEiJ_G0026139.1 mouse_genomes_project 2 179127416 179150131 + MGP_CASTEiJ_P0059527 Stx16 protein_coding protein_coding MGP_CASTEiJ_T0059528.1 MGP_CASTEiJ_G0026139.1 mouse_genomes_project 2 179127424 179147346 + MGP_CASTEiJ_P0059528 Stx16 protein_coding protein_coding MGP_CASTEiJ_T0001013.1 MGP_CASTEiJ_G0000949.1 mouse_genomes_project 2 20940772 20942282 + TEC TEC MGP_CASTEiJ_T0010174.1 MGP_CASTEiJ_G0008362.1 mouse_genomes_project 2 131297269 131297383 - Gm22859 miRNA miRNA MGP_CASTEiJ_T0055030.1 MGP_CASTEiJ_G0024999.1 mouse_genomes_project 2 69178805 69180047 + Ppig protein_coding processed_transcript MGP_CASTEiJ_T0055031.1 MGP_CASTEiJ_G0024999.1 mouse_genomes_project 2 69179062 69213454 + MGP_CASTEiJ_P0055031 Ppig protein_coding protein_coding MGP_CASTEiJ_T0055032.1 MGP_CASTEiJ_G0024999.1 mouse_genomes_project 2 69179111 69193254 + Ppig protein_coding processed_transcript MGP_CASTEiJ_T0055033.1 MGP_CASTEiJ_G0024999.1 mouse_genomes_project 2 69179160 69192289 + Ppig protein_coding processed_transcript MGP_CASTEiJ_T0055034.1 MGP_CASTEiJ_G0024999.1 mouse_genomes_project 2 69179350 69213454 + MGP_CASTEiJ_P0055034 Ppig protein_coding protein_coding MGP_CASTEiJ_T0055035.1 MGP_CASTEiJ_G0024999.1 mouse_genomes_project 2 69179583 69196069 + Ppig protein_coding processed_transcript MGP_CASTEiJ_T0055036.1 MGP_CASTEiJ_G0024999.1 mouse_genomes_project 2 69187538 69195772 + MGP_CASTEiJ_P0055036 Ppig protein_coding protein_coding MGP_CASTEiJ_T0055037.1 MGP_CASTEiJ_G0024999.1 mouse_genomes_project 2 69191708 69201171 + Ppig protein_coding processed_transcript MGP_CASTEiJ_T0055038.1 MGP_CASTEiJ_G0024999.1 mouse_genomes_project 2 69191956 69193007 + Ppig protein_coding processed_transcript MGP_CASTEiJ_T0055039.1 MGP_CASTEiJ_G0024999.1 mouse_genomes_project 2 69192125 69193024 + Ppig protein_coding processed_transcript MGP_CASTEiJ_T0055040.1 MGP_CASTEiJ_G0024999.1 mouse_genomes_project 2 69195637 69201257 + Ppig protein_coding processed_transcript MGP_CASTEiJ_T0055041.1 MGP_CASTEiJ_G0024999.1 mouse_genomes_project 2 69201312 69208989 + Ppig protein_coding processed_transcript MGP_CASTEiJ_T0055976.1 MGP_CASTEiJ_G0025331.1 mouse_genomes_project 2 92073273 92080704 + MGP_CASTEiJ_P0055976 Acp2 protein_coding protein_coding MGP_CASTEiJ_T0055977.1 MGP_CASTEiJ_G0025331.1 mouse_genomes_project 2 92073297 92086343 + MGP_CASTEiJ_P0055977 Acp2 protein_coding protein_coding MGP_CASTEiJ_T0055978.1 MGP_CASTEiJ_G0025331.1 mouse_genomes_project 2 92073312 92084383 + Acp2 protein_coding retained_intron MGP_CASTEiJ_T0055979.1 MGP_CASTEiJ_G0025331.1 mouse_genomes_project 2 92073312 92076430 + MGP_CASTEiJ_P0055979 Acp2 protein_coding protein_coding MGP_CASTEiJ_T0055980.1 MGP_CASTEiJ_G0025331.1 mouse_genomes_project 2 92073316 92074043 + Acp2 protein_coding processed_transcript MGP_CASTEiJ_T0059365.1 MGP_CASTEiJ_G0026093.1 mouse_genomes_project 2 172052302 172071243 - MGP_CASTEiJ_P0059365 protein_coding protein_coding MGP_CASTEiJ_T0059366.1 MGP_CASTEiJ_G0026093.1 mouse_genomes_project 2 172052876 172104031 - protein_coding processed_transcript MGP_CASTEiJ_T0059367.1 MGP_CASTEiJ_G0026093.1 mouse_genomes_project 2 172053384 172054828 - protein_coding retained_intron MGP_CASTEiJ_T0059368.1 MGP_CASTEiJ_G0026093.1 mouse_genomes_project 2 172063878 172071241 - protein_coding retained_intron MGP_CASTEiJ_T0013034.1 MGP_CASTEiJ_G0011197.1 mouse_genomes_project 2 12755720 12756694 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010181.1 MGP_CASTEiJ_G0008369.1 mouse_genomes_project 2 148982487 148982675 + Gm25026 miRNA miRNA MGP_CASTEiJ_T0054326.1 MGP_CASTEiJ_G0024856.1 mouse_genomes_project 2 34343090 34365115 - MGP_CASTEiJ_P0054326 Lhx6 protein_coding protein_coding MGP_CASTEiJ_T0054327.1 MGP_CASTEiJ_G0024856.1 mouse_genomes_project 2 34343090 34366334 - MGP_CASTEiJ_P0054327 Lhx6 protein_coding protein_coding MGP_CASTEiJ_T0054328.1 MGP_CASTEiJ_G0024856.1 mouse_genomes_project 2 34343090 34366471 - MGP_CASTEiJ_P0054328 Lhx6 protein_coding protein_coding MGP_CASTEiJ_T0054329.1 MGP_CASTEiJ_G0024856.1 mouse_genomes_project 2 34343090 34365115 - MGP_CASTEiJ_P0054329 Lhx6 protein_coding protein_coding MGP_CASTEiJ_T0054330.1 MGP_CASTEiJ_G0024856.1 mouse_genomes_project 2 34343091 34366471 - MGP_CASTEiJ_P0054330 Lhx6 protein_coding protein_coding MGP_CASTEiJ_T0054331.1 MGP_CASTEiJ_G0024856.1 mouse_genomes_project 2 34344847 34355419 - MGP_CASTEiJ_P0054331 Lhx6 protein_coding protein_coding MGP_CASTEiJ_T0054332.1 MGP_CASTEiJ_G0024856.1 mouse_genomes_project 2 34344850 34365954 - MGP_CASTEiJ_P0054332 Lhx6 protein_coding protein_coding MGP_CASTEiJ_T0054333.1 MGP_CASTEiJ_G0024856.1 mouse_genomes_project 2 34355370 34364647 - Lhx6 protein_coding retained_intron MGP_CASTEiJ_T0054334.1 MGP_CASTEiJ_G0024856.1 mouse_genomes_project 2 34362381 34366318 - Lhx6 protein_coding processed_transcript MGP_CASTEiJ_T0056212.1 MGP_CASTEiJ_G0025369.1 mouse_genomes_project 2 95068748 95072966 - Alkbh3 protein_coding processed_transcript MGP_CASTEiJ_T0056213.1 MGP_CASTEiJ_G0025369.1 mouse_genomes_project 2 95068748 95072935 - Alkbh3 protein_coding processed_transcript MGP_CASTEiJ_T0056214.1 MGP_CASTEiJ_G0025369.1 mouse_genomes_project 2 95068748 95101078 - MGP_CASTEiJ_P0056214 Alkbh3 protein_coding protein_coding MGP_CASTEiJ_T0056215.1 MGP_CASTEiJ_G0025369.1 mouse_genomes_project 2 95068827 95069839 - Alkbh3 protein_coding processed_transcript MGP_CASTEiJ_T0056216.1 MGP_CASTEiJ_G0025369.1 mouse_genomes_project 2 95068835 95101001 - MGP_CASTEiJ_P0056216 Alkbh3 protein_coding protein_coding MGP_CASTEiJ_T0056217.1 MGP_CASTEiJ_G0025369.1 mouse_genomes_project 2 95084296 95100702 - Alkbh3 protein_coding processed_transcript MGP_CASTEiJ_T0056218.1 MGP_CASTEiJ_G0025369.1 mouse_genomes_project 2 95084365 95093246 - Alkbh3 protein_coding processed_transcript MGP_CASTEiJ_T0056219.1 MGP_CASTEiJ_G0025369.1 mouse_genomes_project 2 95084365 95101025 - MGP_CASTEiJ_P0056219 Alkbh3 protein_coding protein_coding MGP_CASTEiJ_T0056220.1 MGP_CASTEiJ_G0025369.1 mouse_genomes_project 2 95093832 95101025 - Alkbh3 protein_coding processed_transcript MGP_CASTEiJ_T0056221.1 MGP_CASTEiJ_G0025369.1 mouse_genomes_project 2 95094303 95101023 - Alkbh3 protein_coding processed_transcript MGP_CASTEiJ_T0056222.1 MGP_CASTEiJ_G0025369.1 mouse_genomes_project 2 95098319 95101023 - Alkbh3 protein_coding processed_transcript MGP_CASTEiJ_T0055710.1 MGP_CASTEiJ_G0025203.1 mouse_genomes_project 2 88090647 88206103 - MGP_CASTEiJ_P0055710 protein_coding protein_coding MGP_CASTEiJ_T0013135.1 MGP_CASTEiJ_G0011298.1 mouse_genomes_project 2 52327263 52328235 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013445.1 MGP_CASTEiJ_G0011608.1 mouse_genomes_project 2 172701420 172701856 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053397.1 MGP_CASTEiJ_G0024718.1 mouse_genomes_project 2 26186753 26190601 - 1700007K13Rik protein_coding processed_transcript MGP_CASTEiJ_T0053398.1 MGP_CASTEiJ_G0024718.1 mouse_genomes_project 2 26186753 26191039 - MGP_CASTEiJ_P0053398 1700007K13Rik protein_coding protein_coding MGP_CASTEiJ_T0053399.1 MGP_CASTEiJ_G0024718.1 mouse_genomes_project 2 26187100 26191023 - MGP_CASTEiJ_P0053399 1700007K13Rik protein_coding protein_coding MGP_CASTEiJ_T0013335.1 MGP_CASTEiJ_G0011498.1 mouse_genomes_project 2 131327339 131327818 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003995.1 MGP_CASTEiJ_G0003543.1 mouse_genomes_project 2 154798638 154800262 - Gm14167 antisense antisense MGP_CASTEiJ_T0053304.1 MGP_CASTEiJ_G0024699.1 mouse_genomes_project 2 24543996 24560901 - MGP_CASTEiJ_P0053304 Surf4 protein_coding protein_coding MGP_CASTEiJ_T0053305.1 MGP_CASTEiJ_G0024699.1 mouse_genomes_project 2 24545920 24557393 - MGP_CASTEiJ_P0053305 Surf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053306.1 MGP_CASTEiJ_G0024699.1 mouse_genomes_project 2 24548921 24560754 - MGP_CASTEiJ_P0053306 Surf4 protein_coding protein_coding MGP_CASTEiJ_T0017177.1 MGP_CASTEiJ_G0014811.1 mouse_genomes_project 2 179944823 179947555 - Gm14617 processed_transcript retained_intron MGP_CASTEiJ_T0017178.1 MGP_CASTEiJ_G0014811.1 mouse_genomes_project 2 179944950 179950096 - Gm14617 processed_transcript lincRNA MGP_CASTEiJ_T0017179.1 MGP_CASTEiJ_G0014811.1 mouse_genomes_project 2 179946977 179949973 - Gm14617 processed_transcript lincRNA MGP_CASTEiJ_T0013100.1 MGP_CASTEiJ_G0011263.1 mouse_genomes_project 2 37558364 37558680 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001052.1 MGP_CASTEiJ_G0000987.1 mouse_genomes_project 2 139458139 139458406 + TEC TEC MGP_CASTEiJ_T0013421.1 MGP_CASTEiJ_G0011584.1 mouse_genomes_project 2 160578535 160579079 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055007.1 MGP_CASTEiJ_G0024993.1 mouse_genomes_project 2 68641787 68760019 - MGP_CASTEiJ_P0055007 Abcb11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055008.1 MGP_CASTEiJ_G0024993.1 mouse_genomes_project 2 68641881 68759889 - MGP_CASTEiJ_P0055008 Abcb11 protein_coding protein_coding MGP_CASTEiJ_T0055009.1 MGP_CASTEiJ_G0024993.1 mouse_genomes_project 2 68641888 68759875 - MGP_CASTEiJ_P0055009 Abcb11 protein_coding protein_coding MGP_CASTEiJ_T0055010.1 MGP_CASTEiJ_G0024993.1 mouse_genomes_project 2 68641888 68759891 - MGP_CASTEiJ_P0055010 Abcb11 protein_coding protein_coding MGP_CASTEiJ_T0055011.1 MGP_CASTEiJ_G0024993.1 mouse_genomes_project 2 68641909 68642678 - Abcb11 protein_coding processed_transcript MGP_CASTEiJ_T0010135.1 MGP_CASTEiJ_G0008323.1 mouse_genomes_project 2 64554602 64554707 - Mir6337 miRNA miRNA MGP_CASTEiJ_T0013441.1 MGP_CASTEiJ_G0011604.1 mouse_genomes_project 2 171462806 171463004 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013327.1 MGP_CASTEiJ_G0011490.1 mouse_genomes_project 2 127275498 127275598 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059240.1 MGP_CASTEiJ_G0026074.1 mouse_genomes_project 2 169886583 169947940 + Eya2 protein_coding processed_transcript MGP_CASTEiJ_T0059241.1 MGP_CASTEiJ_G0026074.1 mouse_genomes_project 2 169896051 170012245 + MGP_CASTEiJ_P0059241 Eya2 protein_coding protein_coding MGP_CASTEiJ_T0059242.1 MGP_CASTEiJ_G0026074.1 mouse_genomes_project 2 169944096 170005545 + Eya2 protein_coding processed_transcript MGP_CASTEiJ_T0059243.1 MGP_CASTEiJ_G0026074.1 mouse_genomes_project 2 170000967 170006416 + Eya2 protein_coding processed_transcript MGP_CASTEiJ_T0055785.1 MGP_CASTEiJ_G0025271.1 mouse_genomes_project 2 89990485 89991421 - MGP_CASTEiJ_P0055785 Olfr1224-ps1 protein_coding protein_coding MGP_CASTEiJ_T0054749.1 MGP_CASTEiJ_G0024952.1 mouse_genomes_project 2 58572251 58820062 + MGP_CASTEiJ_P0054749 Tanc1 protein_coding protein_coding MGP_CASTEiJ_T0054750.1 MGP_CASTEiJ_G0024952.1 mouse_genomes_project 2 58572282 58610698 + Tanc1 protein_coding retained_intron MGP_CASTEiJ_T0054751.1 MGP_CASTEiJ_G0024952.1 mouse_genomes_project 2 58590344 58608231 + Tanc1 protein_coding retained_intron MGP_CASTEiJ_T0054752.1 MGP_CASTEiJ_G0024952.1 mouse_genomes_project 2 58608040 58819631 + MGP_CASTEiJ_P0054752 Tanc1 protein_coding protein_coding MGP_CASTEiJ_T0054753.1 MGP_CASTEiJ_G0024952.1 mouse_genomes_project 2 58654964 58819639 + MGP_CASTEiJ_P0054753 Tanc1 protein_coding protein_coding MGP_CASTEiJ_T0054754.1 MGP_CASTEiJ_G0024952.1 mouse_genomes_project 2 58668965 58819639 + MGP_CASTEiJ_P0054754 Tanc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054755.1 MGP_CASTEiJ_G0024952.1 mouse_genomes_project 2 58673414 58691189 + Tanc1 protein_coding processed_transcript MGP_CASTEiJ_T0054756.1 MGP_CASTEiJ_G0024952.1 mouse_genomes_project 2 58709983 58794080 + Tanc1 protein_coding retained_intron MGP_CASTEiJ_T0054757.1 MGP_CASTEiJ_G0024952.1 mouse_genomes_project 2 58737706 58740775 + Tanc1 protein_coding processed_transcript MGP_CASTEiJ_T0054758.1 MGP_CASTEiJ_G0024952.1 mouse_genomes_project 2 58749212 58755020 + Tanc1 protein_coding processed_transcript MGP_CASTEiJ_T0054759.1 MGP_CASTEiJ_G0024952.1 mouse_genomes_project 2 58778738 58782171 + Tanc1 protein_coding retained_intron MGP_CASTEiJ_T0054760.1 MGP_CASTEiJ_G0024952.1 mouse_genomes_project 2 58815676 58819629 + Tanc1 protein_coding retained_intron MGP_CASTEiJ_T0056466.1 MGP_CASTEiJ_G0025417.1 mouse_genomes_project 2 107239394 107296529 + MGP_CASTEiJ_P0056466 Immp1l protein_coding protein_coding MGP_CASTEiJ_T0053849.1 MGP_CASTEiJ_G0024786.1 mouse_genomes_project 2 29659466 29669554 + Abl1 protein_coding retained_intron MGP_CASTEiJ_T0053850.1 MGP_CASTEiJ_G0024786.1 mouse_genomes_project 2 29659627 29678251 + Abl1 protein_coding processed_transcript MGP_CASTEiJ_T0053851.1 MGP_CASTEiJ_G0024786.1 mouse_genomes_project 2 29659641 29784064 + MGP_CASTEiJ_P0053851 Abl1 protein_coding protein_coding MGP_CASTEiJ_T0053852.1 MGP_CASTEiJ_G0024786.1 mouse_genomes_project 2 29659642 29780862 + MGP_CASTEiJ_P0053852 Abl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053853.1 MGP_CASTEiJ_G0024786.1 mouse_genomes_project 2 29660555 29758399 + MGP_CASTEiJ_P0053853 Abl1 protein_coding protein_coding MGP_CASTEiJ_T0053854.1 MGP_CASTEiJ_G0024786.1 mouse_genomes_project 2 29660701 29759031 + MGP_CASTEiJ_P0053854 Abl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053855.1 MGP_CASTEiJ_G0024786.1 mouse_genomes_project 2 29740123 29784750 + MGP_CASTEiJ_P0053855 Abl1 protein_coding protein_coding MGP_CASTEiJ_T0053856.1 MGP_CASTEiJ_G0024786.1 mouse_genomes_project 2 29740353 29759031 + MGP_CASTEiJ_P0053856 Abl1 protein_coding protein_coding MGP_CASTEiJ_T0053857.1 MGP_CASTEiJ_G0024786.1 mouse_genomes_project 2 29770179 29774442 + Abl1 protein_coding retained_intron MGP_CASTEiJ_T0053858.1 MGP_CASTEiJ_G0024786.1 mouse_genomes_project 2 29777168 29778515 + Abl1 protein_coding retained_intron MGP_CASTEiJ_T0017011.1 MGP_CASTEiJ_G0014723.1 mouse_genomes_project 2 28148151 28167427 - Gm14471 processed_transcript processed_transcript MGP_CASTEiJ_T0102256.1 MGP_CASTEiJ_G0038981.1 mouse_genomes_project 2 159975106 159975426 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0056318.1 MGP_CASTEiJ_G0025389.1 mouse_genomes_project 2 104602522 104646438 + MGP_CASTEiJ_P0056318 Elf5 protein_coding protein_coding MGP_CASTEiJ_T0056319.1 MGP_CASTEiJ_G0025389.1 mouse_genomes_project 2 104602547 104639488 + Elf5 protein_coding retained_intron MGP_CASTEiJ_T0056320.1 MGP_CASTEiJ_G0025389.1 mouse_genomes_project 2 104614862 104646441 + MGP_CASTEiJ_P0056320 Elf5 protein_coding protein_coding MGP_CASTEiJ_T0056321.1 MGP_CASTEiJ_G0025389.1 mouse_genomes_project 2 104614926 104645319 + MGP_CASTEiJ_P0056321 Elf5 protein_coding protein_coding MGP_CASTEiJ_T0056322.1 MGP_CASTEiJ_G0025389.1 mouse_genomes_project 2 104615629 104644545 + MGP_CASTEiJ_P0056322 Elf5 protein_coding protein_coding MGP_CASTEiJ_T0056323.1 MGP_CASTEiJ_G0025389.1 mouse_genomes_project 2 104641077 104644529 + Elf5 protein_coding processed_transcript MGP_CASTEiJ_T0056324.1 MGP_CASTEiJ_G0025389.1 mouse_genomes_project 2 104644251 104645301 + Elf5 protein_coding processed_transcript MGP_CASTEiJ_T0010182.1 MGP_CASTEiJ_G0008370.1 mouse_genomes_project 2 151266960 151267039 + Gm27420 miRNA miRNA MGP_CASTEiJ_T0053975.1 MGP_CASTEiJ_G0024801.1 mouse_genomes_project 2 30412246 30415699 - MGP_CASTEiJ_P0053975 Lcn2 protein_coding protein_coding MGP_CASTEiJ_T0053976.1 MGP_CASTEiJ_G0024801.1 mouse_genomes_project 2 30412253 30415343 - Lcn2 protein_coding processed_transcript MGP_CASTEiJ_T0053977.1 MGP_CASTEiJ_G0024801.1 mouse_genomes_project 2 30412259 30413620 - Lcn2 protein_coding retained_intron MGP_CASTEiJ_T0053978.1 MGP_CASTEiJ_G0024801.1 mouse_genomes_project 2 30412803 30413728 - Lcn2 protein_coding retained_intron MGP_CASTEiJ_T0053979.1 MGP_CASTEiJ_G0024801.1 mouse_genomes_project 2 30413065 30415875 - MGP_CASTEiJ_P0053979 Lcn2 protein_coding protein_coding MGP_CASTEiJ_T0053980.1 MGP_CASTEiJ_G0024801.1 mouse_genomes_project 2 30414176 30415380 - Lcn2 protein_coding retained_intron MGP_CASTEiJ_T0013184.1 MGP_CASTEiJ_G0011347.1 mouse_genomes_project 2 72870774 72871296 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058336.1 MGP_CASTEiJ_G0025874.1 mouse_genomes_project 2 157028216 157044703 - MGP_CASTEiJ_P0058336 Commd7 protein_coding protein_coding MGP_CASTEiJ_T0058337.1 MGP_CASTEiJ_G0025874.1 mouse_genomes_project 2 157030016 157044757 - Commd7 protein_coding retained_intron MGP_CASTEiJ_T0057783.1 MGP_CASTEiJ_G0025725.1 mouse_genomes_project 2 135404534 135420139 + MGP_CASTEiJ_P0057783 Chgb protein_coding protein_coding MGP_CASTEiJ_T0057932.1 MGP_CASTEiJ_G0025760.1 mouse_genomes_project 2 147056243 147102476 + MGP_CASTEiJ_P0057932 Banf2 protein_coding protein_coding MGP_CASTEiJ_T0057933.1 MGP_CASTEiJ_G0025760.1 mouse_genomes_project 2 147056286 147102476 + MGP_CASTEiJ_P0057933 Banf2 protein_coding protein_coding MGP_CASTEiJ_T0053417.1 MGP_CASTEiJ_G0024723.1 mouse_genomes_project 2 26282373 26292618 - MGP_CASTEiJ_P0053417 Cel protein_coding protein_coding MGP_CASTEiJ_T0053418.1 MGP_CASTEiJ_G0024723.1 mouse_genomes_project 2 26289786 26292659 - Cel protein_coding processed_transcript MGP_CASTEiJ_T0101578.1 MGP_CASTEiJ_G0038450.1 mouse_genomes_project 2 163879510 163879958 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0056037.1 MGP_CASTEiJ_G0025340.1 mouse_genomes_project 2 92569536 92592911 + MGP_CASTEiJ_P0056037 Arhgap1 protein_coding protein_coding MGP_CASTEiJ_T0056038.1 MGP_CASTEiJ_G0025340.1 mouse_genomes_project 2 92569794 92592911 + MGP_CASTEiJ_P0056038 Arhgap1 protein_coding protein_coding MGP_CASTEiJ_T0056039.1 MGP_CASTEiJ_G0025340.1 mouse_genomes_project 2 92569899 92592911 + MGP_CASTEiJ_P0056039 Arhgap1 protein_coding protein_coding MGP_CASTEiJ_T0056040.1 MGP_CASTEiJ_G0025340.1 mouse_genomes_project 2 92571169 92574200 + Arhgap1 protein_coding processed_transcript MGP_CASTEiJ_T0056041.1 MGP_CASTEiJ_G0025340.1 mouse_genomes_project 2 92571169 92574198 + Arhgap1 protein_coding processed_transcript MGP_CASTEiJ_T0056042.1 MGP_CASTEiJ_G0025340.1 mouse_genomes_project 2 92571418 92588910 + Arhgap1 protein_coding processed_transcript MGP_CASTEiJ_T0056043.1 MGP_CASTEiJ_G0025340.1 mouse_genomes_project 2 92572879 92592887 + MGP_CASTEiJ_P0056043 Arhgap1 protein_coding protein_coding MGP_CASTEiJ_T0056044.1 MGP_CASTEiJ_G0025340.1 mouse_genomes_project 2 92589097 92591946 + Arhgap1 protein_coding processed_transcript MGP_CASTEiJ_T0056045.1 MGP_CASTEiJ_G0025340.1 mouse_genomes_project 2 92590515 92591632 + Arhgap1 protein_coding processed_transcript MGP_CASTEiJ_T0007204.1 MGP_CASTEiJ_G0005923.1 mouse_genomes_project 2 170468120 170469188 - Gm11466 lincRNA lincRNA MGP_CASTEiJ_T0010059.1 MGP_CASTEiJ_G0008247.1 mouse_genomes_project 2 7721500 7721621 + Mir669d miRNA miRNA MGP_CASTEiJ_T0056554.1 MGP_CASTEiJ_G0025456.1 mouse_genomes_project 2 113304093 113305041 + MGP_CASTEiJ_P0056554 Olfr1302 protein_coding protein_coding MGP_CASTEiJ_T0055677.1 MGP_CASTEiJ_G0025178.1 mouse_genomes_project 2 87494373 87495348 + MGP_CASTEiJ_P0055677 Olfr1102 protein_coding protein_coding MGP_CASTEiJ_T0013148.1 MGP_CASTEiJ_G0011311.1 mouse_genomes_project 2 57286477 57286959 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098579.1 MGP_CASTEiJ_G0035510.1 mouse_genomes_project 2 122557416 122557541 - n-R5s205 rRNA rRNA MGP_CASTEiJ_T0013066.1 MGP_CASTEiJ_G0011229.1 mouse_genomes_project 2 22496961 22497333 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102227.1 MGP_CASTEiJ_G0038952.1 mouse_genomes_project 2 86905808 86906619 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0057862.1 MGP_CASTEiJ_G0025742.1 mouse_genomes_project 2 139872937 139908983 - MGP_CASTEiJ_P0057862 Jag1 protein_coding protein_coding MGP_CASTEiJ_T0057863.1 MGP_CASTEiJ_G0025742.1 mouse_genomes_project 2 139874230 139877295 - Jag1 protein_coding retained_intron MGP_CASTEiJ_T0057864.1 MGP_CASTEiJ_G0025742.1 mouse_genomes_project 2 139874292 139908639 - MGP_CASTEiJ_P0057864 Jag1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058866.1 MGP_CASTEiJ_G0025976.1 mouse_genomes_project 2 162450304 162455299 + MGP_CASTEiJ_P0058866 Slc32a1 protein_coding protein_coding MGP_CASTEiJ_T0001050.1 MGP_CASTEiJ_G0000985.1 mouse_genomes_project 2 131581783 131582821 - TEC TEC MGP_CASTEiJ_T0055846.1 MGP_CASTEiJ_G0025313.1 mouse_genomes_project 2 91068466 91069553 - MGP_CASTEiJ_P0055846 Olfr142 protein_coding protein_coding MGP_CASTEiJ_T0058863.1 MGP_CASTEiJ_G0025975.1 mouse_genomes_project 2 162348712 162387003 + MGP_CASTEiJ_P0058863 Arhgap40 protein_coding protein_coding MGP_CASTEiJ_T0058864.1 MGP_CASTEiJ_G0025975.1 mouse_genomes_project 2 162348712 162387148 + MGP_CASTEiJ_P0058864 Arhgap40 protein_coding protein_coding MGP_CASTEiJ_T0058865.1 MGP_CASTEiJ_G0025975.1 mouse_genomes_project 2 162378190 162387148 + Arhgap40 protein_coding retained_intron MGP_CASTEiJ_T0056582.1 MGP_CASTEiJ_G0025473.1 mouse_genomes_project 2 113952906 113973102 + MGP_CASTEiJ_P0056582 Emc7 protein_coding protein_coding MGP_CASTEiJ_T0004002.1 MGP_CASTEiJ_G0003549.1 mouse_genomes_project 2 155982284 155983734 - 1700030C14Rik antisense antisense MGP_CASTEiJ_T0055693.1 MGP_CASTEiJ_G0025194.1 mouse_genomes_project 2 87947054 87948026 + MGP_CASTEiJ_P0055693 Olfr1123 protein_coding protein_coding MGP_CASTEiJ_T0017070.1 MGP_CASTEiJ_G0014761.1 mouse_genomes_project 2 95068232 95071788 + Alkbh3os1 processed_transcript processed_transcript MGP_CASTEiJ_T0099616.1 MGP_CASTEiJ_G0036529.1 mouse_genomes_project 2 242276 242417 - Gm22005 snRNA snRNA MGP_CASTEiJ_T0057035.1 MGP_CASTEiJ_G0025566.1 mouse_genomes_project 2 123123224 123137928 + Tubgcp4 protein_coding processed_transcript MGP_CASTEiJ_T0057036.1 MGP_CASTEiJ_G0025566.1 mouse_genomes_project 2 123123738 123153340 + MGP_CASTEiJ_P0057036 Tubgcp4 protein_coding protein_coding MGP_CASTEiJ_T0057037.1 MGP_CASTEiJ_G0025566.1 mouse_genomes_project 2 123123779 123153339 + MGP_CASTEiJ_P0057037 Tubgcp4 protein_coding protein_coding MGP_CASTEiJ_T0057038.1 MGP_CASTEiJ_G0025566.1 mouse_genomes_project 2 123123785 123153340 + MGP_CASTEiJ_P0057038 Tubgcp4 protein_coding protein_coding MGP_CASTEiJ_T0057039.1 MGP_CASTEiJ_G0025566.1 mouse_genomes_project 2 123123810 123153339 + Tubgcp4 protein_coding retained_intron MGP_CASTEiJ_T0057040.1 MGP_CASTEiJ_G0025566.1 mouse_genomes_project 2 123123816 123129426 + Tubgcp4 protein_coding processed_transcript MGP_CASTEiJ_T0057041.1 MGP_CASTEiJ_G0025566.1 mouse_genomes_project 2 123123838 123148786 + MGP_CASTEiJ_P0057041 Tubgcp4 protein_coding protein_coding MGP_CASTEiJ_T0057042.1 MGP_CASTEiJ_G0025566.1 mouse_genomes_project 2 123123863 123137971 + Tubgcp4 protein_coding processed_transcript MGP_CASTEiJ_T0057043.1 MGP_CASTEiJ_G0025566.1 mouse_genomes_project 2 123124152 123140207 + Tubgcp4 protein_coding retained_intron MGP_CASTEiJ_T0057044.1 MGP_CASTEiJ_G0025566.1 mouse_genomes_project 2 123127176 123137974 + Tubgcp4 protein_coding processed_transcript MGP_CASTEiJ_T0057045.1 MGP_CASTEiJ_G0025566.1 mouse_genomes_project 2 123137110 123138301 + Tubgcp4 protein_coding retained_intron MGP_CASTEiJ_T0057046.1 MGP_CASTEiJ_G0025566.1 mouse_genomes_project 2 123140841 123151619 + Tubgcp4 protein_coding retained_intron MGP_CASTEiJ_T0057047.1 MGP_CASTEiJ_G0025566.1 mouse_genomes_project 2 123141585 123145896 + Tubgcp4 protein_coding retained_intron MGP_CASTEiJ_T0057048.1 MGP_CASTEiJ_G0025566.1 mouse_genomes_project 2 123145429 123150801 + Tubgcp4 protein_coding retained_intron MGP_CASTEiJ_T0100932.1 MGP_CASTEiJ_G0037845.1 mouse_genomes_project 2 171426496 171426585 + Gm23201 snoRNA snoRNA MGP_CASTEiJ_T0010103.1 MGP_CASTEiJ_G0008291.1 mouse_genomes_project 2 24088809 24088870 - Mir6996 miRNA miRNA MGP_CASTEiJ_T0001046.1 MGP_CASTEiJ_G0000982.1 mouse_genomes_project 2 117758740 117759667 - TEC TEC MGP_CASTEiJ_T0011197.1 MGP_CASTEiJ_G0009385.1 mouse_genomes_project 2 179350703 179350828 + Gm27849 misc_RNA misc_RNA MGP_CASTEiJ_T0055717.1 MGP_CASTEiJ_G0025209.1 mouse_genomes_project 2 88258651 88259584 - MGP_CASTEiJ_P0055717 Olfr1137 protein_coding protein_coding MGP_CASTEiJ_T0055426.1 MGP_CASTEiJ_G0025073.1 mouse_genomes_project 2 79756149 79796322 + MGP_CASTEiJ_P0055426 Ssfa2 protein_coding protein_coding MGP_CASTEiJ_T0055427.1 MGP_CASTEiJ_G0025073.1 mouse_genomes_project 2 79756223 79796322 + MGP_CASTEiJ_P0055427 Ssfa2 protein_coding protein_coding MGP_CASTEiJ_T0055428.1 MGP_CASTEiJ_G0025073.1 mouse_genomes_project 2 79756252 79796322 + MGP_CASTEiJ_P0055428 Ssfa2 protein_coding protein_coding MGP_CASTEiJ_T0055429.1 MGP_CASTEiJ_G0025073.1 mouse_genomes_project 2 79756258 79757242 + Ssfa2 protein_coding processed_transcript MGP_CASTEiJ_T0055430.1 MGP_CASTEiJ_G0025073.1 mouse_genomes_project 2 79756304 79796103 + MGP_CASTEiJ_P0055430 Ssfa2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055431.1 MGP_CASTEiJ_G0025073.1 mouse_genomes_project 2 79761247 79796322 + Ssfa2 protein_coding processed_transcript MGP_CASTEiJ_T0054325.1 MGP_CASTEiJ_G0024855.1 mouse_genomes_project 2 34309076 34340851 + MGP_CASTEiJ_P0054325 Morn5 protein_coding protein_coding MGP_CASTEiJ_T0059446.1 MGP_CASTEiJ_G0026110.1 mouse_genomes_project 2 175042695 175128525 - MGP_CASTEiJ_P0059446 Bcas1 protein_coding protein_coding MGP_CASTEiJ_T0059447.1 MGP_CASTEiJ_G0026110.1 mouse_genomes_project 2 175046120 175137985 - MGP_CASTEiJ_P0059447 Bcas1 protein_coding protein_coding MGP_CASTEiJ_T0059448.1 MGP_CASTEiJ_G0026110.1 mouse_genomes_project 2 175046270 175137985 - MGP_CASTEiJ_P0059448 Bcas1 protein_coding protein_coding MGP_CASTEiJ_T0059449.1 MGP_CASTEiJ_G0026110.1 mouse_genomes_project 2 175047057 175048884 - Bcas1 protein_coding processed_transcript MGP_CASTEiJ_T0059450.1 MGP_CASTEiJ_G0026110.1 mouse_genomes_project 2 175047071 175059068 - Bcas1 protein_coding processed_transcript MGP_CASTEiJ_T0059451.1 MGP_CASTEiJ_G0026110.1 mouse_genomes_project 2 175047215 175048939 - Bcas1 protein_coding processed_transcript MGP_CASTEiJ_T0059452.1 MGP_CASTEiJ_G0026110.1 mouse_genomes_project 2 175090481 175091514 - Bcas1 protein_coding processed_transcript MGP_CASTEiJ_T0059453.1 MGP_CASTEiJ_G0026110.1 mouse_genomes_project 2 175102716 175137985 - Bcas1 protein_coding processed_transcript MGP_CASTEiJ_T0052339.1 MGP_CASTEiJ_G0024532.1 mouse_genomes_project 2 7121665 7274018 - MGP_CASTEiJ_P0052339 Taf3 protein_coding protein_coding MGP_CASTEiJ_T0052340.1 MGP_CASTEiJ_G0024532.1 mouse_genomes_project 2 7122409 7156470 - Taf3 protein_coding processed_transcript MGP_CASTEiJ_T0052341.1 MGP_CASTEiJ_G0024532.1 mouse_genomes_project 2 7123196 7125953 - MGP_CASTEiJ_P0052341 Taf3 protein_coding protein_coding MGP_CASTEiJ_T0052342.1 MGP_CASTEiJ_G0024532.1 mouse_genomes_project 2 7123198 7125531 - MGP_CASTEiJ_P0052342 Taf3 protein_coding protein_coding MGP_CASTEiJ_T0056569.1 MGP_CASTEiJ_G0025468.1 mouse_genomes_project 2 113750462 113767842 - MGP_CASTEiJ_P0056569 Nutm1 protein_coding protein_coding MGP_CASTEiJ_T0099632.1 MGP_CASTEiJ_G0036545.1 mouse_genomes_project 2 37339796 37339903 + Gm26127 snRNA snRNA MGP_CASTEiJ_T0007020.1 MGP_CASTEiJ_G0005772.1 mouse_genomes_project 2 54310062 54320721 + Gm14033 lincRNA lincRNA MGP_CASTEiJ_T0007021.1 MGP_CASTEiJ_G0005772.1 mouse_genomes_project 2 54310087 54332837 + Gm14033 lincRNA lincRNA MGP_CASTEiJ_T0013164.1 MGP_CASTEiJ_G0011327.1 mouse_genomes_project 2 64458647 64459659 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010062.1 MGP_CASTEiJ_G0008250.1 mouse_genomes_project 2 7726679 7726765 + Mir669d-2 miRNA miRNA MGP_CASTEiJ_T0006983.1 MGP_CASTEiJ_G0005742.1 mouse_genomes_project 2 28396513 28400725 + Gm14487 lincRNA lincRNA MGP_CASTEiJ_T0055547.1 MGP_CASTEiJ_G0025097.1 mouse_genomes_project 2 84952618 84986340 - MGP_CASTEiJ_P0055547 Zdhhc5 protein_coding protein_coding MGP_CASTEiJ_T0055548.1 MGP_CASTEiJ_G0025097.1 mouse_genomes_project 2 84980824 84985846 - Zdhhc5 protein_coding processed_transcript MGP_CASTEiJ_T0055549.1 MGP_CASTEiJ_G0025097.1 mouse_genomes_project 2 84980973 84986196 - Zdhhc5 protein_coding processed_transcript MGP_CASTEiJ_T0056799.1 MGP_CASTEiJ_G0025526.1 mouse_genomes_project 2 121369473 121402993 - MGP_CASTEiJ_P0056799 Exd1 protein_coding protein_coding MGP_CASTEiJ_T0056800.1 MGP_CASTEiJ_G0025526.1 mouse_genomes_project 2 121369479 121397038 - MGP_CASTEiJ_P0056800 Exd1 protein_coding protein_coding MGP_CASTEiJ_T0056801.1 MGP_CASTEiJ_G0025526.1 mouse_genomes_project 2 121394372 121402564 - MGP_CASTEiJ_P0056801 Exd1 protein_coding protein_coding MGP_CASTEiJ_T0013360.1 MGP_CASTEiJ_G0011523.1 mouse_genomes_project 2 142232816 142235483 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057328.1 MGP_CASTEiJ_G0025624.1 mouse_genomes_project 2 129013061 129022306 - Usp50 protein_coding processed_transcript MGP_CASTEiJ_T0057329.1 MGP_CASTEiJ_G0025624.1 mouse_genomes_project 2 129013436 129037637 - MGP_CASTEiJ_P0057329 Usp50 protein_coding protein_coding MGP_CASTEiJ_T0057330.1 MGP_CASTEiJ_G0025624.1 mouse_genomes_project 2 129029840 129037630 - MGP_CASTEiJ_P0057330 Usp50 protein_coding protein_coding MGP_CASTEiJ_T0057331.1 MGP_CASTEiJ_G0025624.1 mouse_genomes_project 2 129031903 129037651 - Usp50 protein_coding retained_intron MGP_CASTEiJ_T0052699.1 MGP_CASTEiJ_G0024590.1 mouse_genomes_project 2 20331359 20350447 + Pdss1 protein_coding processed_transcript MGP_CASTEiJ_T0052700.1 MGP_CASTEiJ_G0024590.1 mouse_genomes_project 2 20331359 20375890 + MGP_CASTEiJ_P0052700 Pdss1 protein_coding protein_coding MGP_CASTEiJ_T0052701.1 MGP_CASTEiJ_G0024590.1 mouse_genomes_project 2 20331432 20353926 + MGP_CASTEiJ_P0052701 Pdss1 protein_coding protein_coding MGP_CASTEiJ_T0052702.1 MGP_CASTEiJ_G0024590.1 mouse_genomes_project 2 20331456 20337683 + MGP_CASTEiJ_P0052702 Pdss1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052703.1 MGP_CASTEiJ_G0024590.1 mouse_genomes_project 2 20331885 20344513 + MGP_CASTEiJ_P0052703 Pdss1 protein_coding protein_coding MGP_CASTEiJ_T0052704.1 MGP_CASTEiJ_G0024590.1 mouse_genomes_project 2 20369706 20375879 + Pdss1 protein_coding retained_intron MGP_CASTEiJ_T0052705.1 MGP_CASTEiJ_G0024590.1 mouse_genomes_project 2 20371145 20375866 + MGP_CASTEiJ_P0052705 Pdss1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0100907.1 MGP_CASTEiJ_G0037820.1 mouse_genomes_project 2 132700015 132700148 + Gm24451 snoRNA snoRNA MGP_CASTEiJ_T0055076.1 MGP_CASTEiJ_G0025008.1 mouse_genomes_project 2 70036438 70067556 + MGP_CASTEiJ_P0055076 protein_coding protein_coding MGP_CASTEiJ_T0055077.1 MGP_CASTEiJ_G0025008.1 mouse_genomes_project 2 70036450 70067556 + MGP_CASTEiJ_P0055077 protein_coding protein_coding MGP_CASTEiJ_T0055078.1 MGP_CASTEiJ_G0025008.1 mouse_genomes_project 2 70037079 70064093 + protein_coding retained_intron MGP_CASTEiJ_T0055079.1 MGP_CASTEiJ_G0025008.1 mouse_genomes_project 2 70037079 70055922 + protein_coding retained_intron MGP_CASTEiJ_T0055080.1 MGP_CASTEiJ_G0025008.1 mouse_genomes_project 2 70037116 70055768 + MGP_CASTEiJ_P0055080 protein_coding protein_coding MGP_CASTEiJ_T0057263.1 MGP_CASTEiJ_G0025608.1 mouse_genomes_project 2 127509950 127716998 - MGP_CASTEiJ_P0057263 Fbn1 protein_coding protein_coding MGP_CASTEiJ_T0057264.1 MGP_CASTEiJ_G0025608.1 mouse_genomes_project 2 127509983 127718606 - MGP_CASTEiJ_P0057264 Fbn1 protein_coding protein_coding MGP_CASTEiJ_T0057265.1 MGP_CASTEiJ_G0025608.1 mouse_genomes_project 2 127510890 127716251 - MGP_CASTEiJ_P0057265 Fbn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057266.1 MGP_CASTEiJ_G0025608.1 mouse_genomes_project 2 127599773 127716685 - Fbn1 protein_coding retained_intron MGP_CASTEiJ_T0059018.1 MGP_CASTEiJ_G0026011.1 mouse_genomes_project 2 168094183 168117612 + MGP_CASTEiJ_P0059018 Ywhab protein_coding protein_coding MGP_CASTEiJ_T0059019.1 MGP_CASTEiJ_G0026011.1 mouse_genomes_project 2 168094732 168114286 + MGP_CASTEiJ_P0059019 Ywhab protein_coding protein_coding MGP_CASTEiJ_T0053269.1 MGP_CASTEiJ_G0024693.1 mouse_genomes_project 2 24461017 24480485 - MGP_CASTEiJ_P0053269 Abo protein_coding protein_coding MGP_CASTEiJ_T0053270.1 MGP_CASTEiJ_G0024693.1 mouse_genomes_project 2 24461017 24486448 - MGP_CASTEiJ_P0053270 Abo protein_coding protein_coding MGP_CASTEiJ_T0013370.1 MGP_CASTEiJ_G0011533.1 mouse_genomes_project 2 146863629 146864057 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055845.1 MGP_CASTEiJ_G0025312.1 mouse_genomes_project 2 91028758 91031714 - MGP_CASTEiJ_P0055845 protein_coding protein_coding MGP_CASTEiJ_T0013139.1 MGP_CASTEiJ_G0011302.1 mouse_genomes_project 2 54196622 54197648 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053163.1 MGP_CASTEiJ_G0024679.1 mouse_genomes_project 2 23930032 23959191 + MGP_CASTEiJ_P0053163 Gpsm1 protein_coding protein_coding MGP_CASTEiJ_T0053164.1 MGP_CASTEiJ_G0024679.1 mouse_genomes_project 2 23930109 23959191 + MGP_CASTEiJ_P0053164 Gpsm1 protein_coding protein_coding MGP_CASTEiJ_T0053165.1 MGP_CASTEiJ_G0024679.1 mouse_genomes_project 2 23930117 23957748 + MGP_CASTEiJ_P0053165 Gpsm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0053166.1 MGP_CASTEiJ_G0024679.1 mouse_genomes_project 2 23934251 23959191 + MGP_CASTEiJ_P0053166 Gpsm1 protein_coding protein_coding MGP_CASTEiJ_T0053167.1 MGP_CASTEiJ_G0024679.1 mouse_genomes_project 2 23938079 23959191 + MGP_CASTEiJ_P0053167 Gpsm1 protein_coding protein_coding MGP_CASTEiJ_T0053168.1 MGP_CASTEiJ_G0024679.1 mouse_genomes_project 2 23939821 23942175 + Gpsm1 protein_coding processed_transcript MGP_CASTEiJ_T0053169.1 MGP_CASTEiJ_G0024679.1 mouse_genomes_project 2 23940332 23951372 + Gpsm1 protein_coding processed_transcript MGP_CASTEiJ_T0053170.1 MGP_CASTEiJ_G0024679.1 mouse_genomes_project 2 23940522 23950842 + Gpsm1 protein_coding processed_transcript MGP_CASTEiJ_T0053171.1 MGP_CASTEiJ_G0024679.1 mouse_genomes_project 2 23946352 23959191 + MGP_CASTEiJ_P0053171 Gpsm1 protein_coding protein_coding MGP_CASTEiJ_T0053172.1 MGP_CASTEiJ_G0024679.1 mouse_genomes_project 2 23946395 23951453 + MGP_CASTEiJ_P0053172 Gpsm1 protein_coding protein_coding MGP_CASTEiJ_T0053173.1 MGP_CASTEiJ_G0024679.1 mouse_genomes_project 2 23950352 23956286 + Gpsm1 protein_coding processed_transcript MGP_CASTEiJ_T0053174.1 MGP_CASTEiJ_G0024679.1 mouse_genomes_project 2 23950369 23955679 + Gpsm1 protein_coding processed_transcript MGP_CASTEiJ_T0053175.1 MGP_CASTEiJ_G0024679.1 mouse_genomes_project 2 23953240 23958227 + Gpsm1 protein_coding processed_transcript MGP_CASTEiJ_T0053176.1 MGP_CASTEiJ_G0024679.1 mouse_genomes_project 2 23955192 23957862 + Gpsm1 protein_coding processed_transcript MGP_CASTEiJ_T0057325.1 MGP_CASTEiJ_G0025623.1 mouse_genomes_project 2 128957541 129011261 + Usp8 protein_coding processed_transcript MGP_CASTEiJ_T0057326.1 MGP_CASTEiJ_G0025623.1 mouse_genomes_project 2 128957556 129011310 + MGP_CASTEiJ_P0057326 Usp8 protein_coding protein_coding MGP_CASTEiJ_T0057327.1 MGP_CASTEiJ_G0025623.1 mouse_genomes_project 2 128957573 129011303 + MGP_CASTEiJ_P0057327 Usp8 protein_coding protein_coding MGP_CASTEiJ_T0052282.1 MGP_CASTEiJ_G0024523.1 mouse_genomes_project 2 2974879 3027604 - MGP_CASTEiJ_P0052282 Dhtkd1 protein_coding protein_coding MGP_CASTEiJ_T0052283.1 MGP_CASTEiJ_G0024523.1 mouse_genomes_project 2 2976318 3027555 - MGP_CASTEiJ_P0052283 Dhtkd1 protein_coding protein_coding MGP_CASTEiJ_T0052284.1 MGP_CASTEiJ_G0024523.1 mouse_genomes_project 2 2982578 2994152 - Dhtkd1 protein_coding processed_transcript MGP_CASTEiJ_T0007011.1 MGP_CASTEiJ_G0005764.1 mouse_genomes_project 2 48550278 48557290 - Gm13480 lincRNA lincRNA MGP_CASTEiJ_T0098861.1 MGP_CASTEiJ_G0035786.1 mouse_genomes_project 2 1164953 1168757 + Gm37107 sense_intronic sense_intronic MGP_CASTEiJ_T0004011.1 MGP_CASTEiJ_G0003557.1 mouse_genomes_project 2 159450103 159451267 + Gm16098 antisense antisense MGP_CASTEiJ_T0058987.1 MGP_CASTEiJ_G0026002.1 mouse_genomes_project 2 167567765 167582922 + MGP_CASTEiJ_P0058987 R3hdml protein_coding protein_coding MGP_CASTEiJ_T0007194.1 MGP_CASTEiJ_G0005913.1 mouse_genomes_project 2 165180934 165181525 - Gm14242 lincRNA lincRNA MGP_CASTEiJ_T0010079.1 MGP_CASTEiJ_G0008267.1 mouse_genomes_project 2 7748399 7748497 + Mir669m-1 miRNA miRNA MGP_CASTEiJ_T0057284.1 MGP_CASTEiJ_G0025615.1 mouse_genomes_project 2 128087931 128089110 + Galk2 protein_coding processed_transcript MGP_CASTEiJ_T0057285.1 MGP_CASTEiJ_G0025615.1 mouse_genomes_project 2 128087956 128219493 + MGP_CASTEiJ_P0057285 Galk2 protein_coding protein_coding MGP_CASTEiJ_T0057286.1 MGP_CASTEiJ_G0025615.1 mouse_genomes_project 2 128087970 128126815 + MGP_CASTEiJ_P0057286 Galk2 protein_coding protein_coding MGP_CASTEiJ_T0057287.1 MGP_CASTEiJ_G0025615.1 mouse_genomes_project 2 128096631 128218781 + MGP_CASTEiJ_P0057287 Galk2 protein_coding protein_coding MGP_CASTEiJ_T0057288.1 MGP_CASTEiJ_G0025615.1 mouse_genomes_project 2 128096631 128167827 + MGP_CASTEiJ_P0057288 Galk2 protein_coding protein_coding MGP_CASTEiJ_T0057289.1 MGP_CASTEiJ_G0025615.1 mouse_genomes_project 2 128096768 128149849 + Galk2 protein_coding processed_transcript MGP_CASTEiJ_T0057290.1 MGP_CASTEiJ_G0025615.1 mouse_genomes_project 2 128096775 128129952 + MGP_CASTEiJ_P0057290 Galk2 protein_coding protein_coding MGP_CASTEiJ_T0057291.1 MGP_CASTEiJ_G0025615.1 mouse_genomes_project 2 128096779 128167883 + MGP_CASTEiJ_P0057291 Galk2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057292.1 MGP_CASTEiJ_G0025615.1 mouse_genomes_project 2 128096793 128185587 + Galk2 protein_coding retained_intron MGP_CASTEiJ_T0055639.1 MGP_CASTEiJ_G0025141.1 mouse_genomes_project 2 86386571 86387528 + MGP_CASTEiJ_P0055639 Olfr1030 protein_coding protein_coding MGP_CASTEiJ_T0055665.1 MGP_CASTEiJ_G0025166.1 mouse_genomes_project 2 87085935 87086877 - MGP_CASTEiJ_P0055665 protein_coding protein_coding MGP_CASTEiJ_T0057528.1 MGP_CASTEiJ_G0025673.1 mouse_genomes_project 2 132415222 132454521 + MGP_CASTEiJ_P0057528 Tgm3 protein_coding protein_coding MGP_CASTEiJ_T0058840.1 MGP_CASTEiJ_G0025971.1 mouse_genomes_project 2 162126597 162145658 + Lbp protein_coding processed_transcript MGP_CASTEiJ_T0058841.1 MGP_CASTEiJ_G0025971.1 mouse_genomes_project 2 162126597 162130621 + MGP_CASTEiJ_P0058841 Lbp protein_coding protein_coding MGP_CASTEiJ_T0058842.1 MGP_CASTEiJ_G0025971.1 mouse_genomes_project 2 162126597 162159348 + MGP_CASTEiJ_P0058842 Lbp protein_coding protein_coding MGP_CASTEiJ_T0058843.1 MGP_CASTEiJ_G0025971.1 mouse_genomes_project 2 162126716 162143337 + Lbp protein_coding retained_intron MGP_CASTEiJ_T0058844.1 MGP_CASTEiJ_G0025971.1 mouse_genomes_project 2 162136308 162149356 + MGP_CASTEiJ_P0058844 Lbp protein_coding protein_coding MGP_CASTEiJ_T0054148.1 MGP_CASTEiJ_G0024829.1 mouse_genomes_project 2 31515640 31546178 - MGP_CASTEiJ_P0054148 Zbtb34 protein_coding protein_coding MGP_CASTEiJ_T0054149.1 MGP_CASTEiJ_G0024829.1 mouse_genomes_project 2 31515640 31543076 - MGP_CASTEiJ_P0054149 Zbtb34 protein_coding protein_coding MGP_CASTEiJ_T0054150.1 MGP_CASTEiJ_G0024829.1 mouse_genomes_project 2 31521474 31546171 - Zbtb34 protein_coding processed_transcript MGP_CASTEiJ_T0003886.1 MGP_CASTEiJ_G0003470.1 mouse_genomes_project 2 73381581 73387560 + Chrna1os antisense antisense MGP_CASTEiJ_T0003887.1 MGP_CASTEiJ_G0003470.1 mouse_genomes_project 2 73381591 73387581 + Chrna1os antisense antisense MGP_CASTEiJ_T0052977.1 MGP_CASTEiJ_G0024639.1 mouse_genomes_project 2 22913852 22919711 + MGP_CASTEiJ_P0052977 Sapcd2 protein_coding protein_coding MGP_CASTEiJ_T0052978.1 MGP_CASTEiJ_G0024639.1 mouse_genomes_project 2 22913861 22918328 + MGP_CASTEiJ_P0052978 Sapcd2 protein_coding protein_coding MGP_CASTEiJ_T0052979.1 MGP_CASTEiJ_G0024639.1 mouse_genomes_project 2 22913865 22918328 + MGP_CASTEiJ_P0052979 Sapcd2 protein_coding protein_coding MGP_CASTEiJ_T0052980.1 MGP_CASTEiJ_G0024639.1 mouse_genomes_project 2 22913891 22916666 + Sapcd2 protein_coding processed_transcript MGP_CASTEiJ_T0052981.1 MGP_CASTEiJ_G0024639.1 mouse_genomes_project 2 22916543 22917797 + Sapcd2 protein_coding processed_transcript MGP_CASTEiJ_T0052982.1 MGP_CASTEiJ_G0024639.1 mouse_genomes_project 2 22917298 22918302 + Sapcd2 protein_coding processed_transcript MGP_CASTEiJ_T0052983.1 MGP_CASTEiJ_G0024639.1 mouse_genomes_project 2 22917484 22918325 + Sapcd2 protein_coding processed_transcript MGP_CASTEiJ_T0059457.1 MGP_CASTEiJ_G0026113.1 mouse_genomes_project 2 175311091 175346791 - MGP_CASTEiJ_P0059457 4930470P17Rik protein_coding protein_coding MGP_CASTEiJ_T0055799.1 MGP_CASTEiJ_G0025282.1 mouse_genomes_project 2 90245747 90246665 - MGP_CASTEiJ_P0055799 Olfr1239 protein_coding protein_coding MGP_CASTEiJ_T0058731.1 MGP_CASTEiJ_G0025949.1 mouse_genomes_project 2 160552583 160562918 + MGP_CASTEiJ_P0058731 1110008F13Rik protein_coding protein_coding MGP_CASTEiJ_T0058732.1 MGP_CASTEiJ_G0025949.1 mouse_genomes_project 2 160552594 160562753 + 1110008F13Rik protein_coding processed_transcript MGP_CASTEiJ_T0058733.1 MGP_CASTEiJ_G0025949.1 mouse_genomes_project 2 160552600 160556253 + 1110008F13Rik protein_coding retained_intron MGP_CASTEiJ_T0058735.1 MGP_CASTEiJ_G0025949.1 mouse_genomes_project 2 160561896 160562751 + 1110008F13Rik protein_coding processed_transcript MGP_CASTEiJ_T0013241.1 MGP_CASTEiJ_G0011404.1 mouse_genomes_project 2 89288271 89299418 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056422.1 MGP_CASTEiJ_G0025411.1 mouse_genomes_project 2 106394464 106396318 + MGP_CASTEiJ_P0056422 Gm11060 protein_coding protein_coding MGP_CASTEiJ_T0054370.1 MGP_CASTEiJ_G0024881.1 mouse_genomes_project 2 35246975 35250478 + MGP_CASTEiJ_P0054370 Olfr360 protein_coding protein_coding MGP_CASTEiJ_T0054371.1 MGP_CASTEiJ_G0024881.1 mouse_genomes_project 2 35249525 35250478 + MGP_CASTEiJ_P0054371 Olfr360 protein_coding protein_coding MGP_CASTEiJ_T0013110.1 MGP_CASTEiJ_G0011273.1 mouse_genomes_project 2 39333370 39333723 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057986.1 MGP_CASTEiJ_G0025772.1 mouse_genomes_project 2 147890430 147891190 + MGP_CASTEiJ_P0057986 Scp2d1 protein_coding protein_coding MGP_CASTEiJ_T0013406.1 MGP_CASTEiJ_G0011569.1 mouse_genomes_project 2 158438364 158458507 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013068.1 MGP_CASTEiJ_G0011231.1 mouse_genomes_project 2 23106866 23107110 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052569.1 MGP_CASTEiJ_G0024567.1 mouse_genomes_project 2 15403795 15404257 - MGP_CASTEiJ_P0052569 Gm14501 protein_coding protein_coding MGP_CASTEiJ_T0056795.1 MGP_CASTEiJ_G0025525.1 mouse_genomes_project 2 121209003 121327691 - MGP_CASTEiJ_P0056795 Ino80 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056796.1 MGP_CASTEiJ_G0025525.1 mouse_genomes_project 2 121210004 121327625 - MGP_CASTEiJ_P0056796 Ino80 protein_coding protein_coding MGP_CASTEiJ_T0056797.1 MGP_CASTEiJ_G0025525.1 mouse_genomes_project 2 121240770 121327551 - MGP_CASTEiJ_P0056797 Ino80 protein_coding protein_coding MGP_CASTEiJ_T0056798.1 MGP_CASTEiJ_G0025525.1 mouse_genomes_project 2 121271880 121278482 - Ino80 protein_coding retained_intron MGP_CASTEiJ_T0053370.1 MGP_CASTEiJ_G0024712.1 mouse_genomes_project 2 25164716 25171501 + Wdr5 protein_coding processed_transcript MGP_CASTEiJ_T0053371.1 MGP_CASTEiJ_G0024712.1 mouse_genomes_project 2 25164716 25188783 + MGP_CASTEiJ_P0053371 Wdr5 protein_coding protein_coding MGP_CASTEiJ_T0053372.1 MGP_CASTEiJ_G0024712.1 mouse_genomes_project 2 25170611 25187290 + MGP_CASTEiJ_P0053372 Wdr5 protein_coding protein_coding MGP_CASTEiJ_T0053373.1 MGP_CASTEiJ_G0024712.1 mouse_genomes_project 2 25180609 25185602 + Wdr5 protein_coding processed_transcript MGP_CASTEiJ_T0055617.1 MGP_CASTEiJ_G0025121.1 mouse_genomes_project 2 85954441 85955386 + MGP_CASTEiJ_P0055617 Olfr998 protein_coding protein_coding MGP_CASTEiJ_T0013372.1 MGP_CASTEiJ_G0011535.1 mouse_genomes_project 2 146888938 146889271 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057173.1 MGP_CASTEiJ_G0025588.1 mouse_genomes_project 2 124213638 124236712 + MGP_CASTEiJ_P0057173 Trim69 protein_coding protein_coding MGP_CASTEiJ_T0057174.1 MGP_CASTEiJ_G0025588.1 mouse_genomes_project 2 124213740 124236709 + Trim69 protein_coding processed_transcript MGP_CASTEiJ_T0013013.1 MGP_CASTEiJ_G0011176.1 mouse_genomes_project 2 2679144 2679652 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011166.1 MGP_CASTEiJ_G0009354.1 mouse_genomes_project 2 43678867 43678998 + Gm27761 misc_RNA misc_RNA MGP_CASTEiJ_T0059045.1 MGP_CASTEiJ_G0026022.1 mouse_genomes_project 2 168400577 168404603 - MGP_CASTEiJ_P0059045 Svs4 protein_coding protein_coding MGP_CASTEiJ_T0055662.1 MGP_CASTEiJ_G0025164.1 mouse_genomes_project 2 86923021 86923990 - MGP_CASTEiJ_P0055662 Olfr228 protein_coding protein_coding MGP_CASTEiJ_T0056436.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 106993714 107026893 + MGP_CASTEiJ_P0056436 Pax6 protein_coding protein_coding MGP_CASTEiJ_T0056437.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 106993714 107026893 + MGP_CASTEiJ_P0056437 Pax6 protein_coding protein_coding MGP_CASTEiJ_T0056438.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 106993734 107025992 + Pax6 protein_coding processed_transcript MGP_CASTEiJ_T0056439.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 106993749 107013450 + MGP_CASTEiJ_P0056439 Pax6 protein_coding protein_coding MGP_CASTEiJ_T0056440.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 106996658 107026771 + MGP_CASTEiJ_P0056440 Pax6 protein_coding protein_coding MGP_CASTEiJ_T0056441.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 106998672 107000597 + Pax6 protein_coding processed_transcript MGP_CASTEiJ_T0056442.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 106999829 107000680 + Pax6 protein_coding processed_transcript MGP_CASTEiJ_T0056443.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 106999911 107000543 + Pax6 protein_coding retained_intron MGP_CASTEiJ_T0056444.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 106999911 107026772 + MGP_CASTEiJ_P0056444 Pax6 protein_coding protein_coding MGP_CASTEiJ_T0056445.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107000153 107026873 + MGP_CASTEiJ_P0056445 Pax6 protein_coding protein_coding MGP_CASTEiJ_T0056446.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107000233 107026890 + MGP_CASTEiJ_P0056446 Pax6 protein_coding protein_coding MGP_CASTEiJ_T0056447.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107000247 107026600 + MGP_CASTEiJ_P0056447 Pax6 protein_coding protein_coding MGP_CASTEiJ_T0056448.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107000835 107026600 + MGP_CASTEiJ_P0056448 Pax6 protein_coding protein_coding MGP_CASTEiJ_T0056449.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107000836 107026890 + MGP_CASTEiJ_P0056449 Pax6 protein_coding protein_coding MGP_CASTEiJ_T0056450.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107004530 107015371 + MGP_CASTEiJ_P0056450 Pax6 protein_coding protein_coding MGP_CASTEiJ_T0056451.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107006011 107021786 + Pax6 protein_coding processed_transcript MGP_CASTEiJ_T0056452.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107009758 107014560 + Pax6 protein_coding retained_intron MGP_CASTEiJ_T0056453.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107010507 107021797 + Pax6 protein_coding processed_transcript MGP_CASTEiJ_T0056454.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107010552 107021829 + Pax6 protein_coding processed_transcript MGP_CASTEiJ_T0056455.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107010579 107025883 + Pax6 protein_coding retained_intron MGP_CASTEiJ_T0056456.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107010581 107021287 + Pax6 protein_coding processed_transcript MGP_CASTEiJ_T0056457.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107010591 107021807 + Pax6 protein_coding processed_transcript MGP_CASTEiJ_T0056458.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107010681 107021258 + Pax6 protein_coding processed_transcript MGP_CASTEiJ_T0056459.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107013338 107014521 + Pax6 protein_coding retained_intron MGP_CASTEiJ_T0056460.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107014899 107026893 + Pax6 protein_coding processed_transcript MGP_CASTEiJ_T0056461.1 MGP_CASTEiJ_G0025415.1 mouse_genomes_project 2 107022046 107022693 + Pax6 protein_coding retained_intron MGP_CASTEiJ_T0003829.1 MGP_CASTEiJ_G0003429.1 mouse_genomes_project 2 31772419 31773821 + C130021I20Rik antisense antisense MGP_CASTEiJ_T0003830.1 MGP_CASTEiJ_G0003429.1 mouse_genomes_project 2 31772557 31777583 + C130021I20Rik antisense antisense MGP_CASTEiJ_T0007238.1 MGP_CASTEiJ_G0005951.1 mouse_genomes_project 2 176015966 176018412 + Gm14640 lincRNA lincRNA MGP_CASTEiJ_T0013146.1 MGP_CASTEiJ_G0011309.1 mouse_genomes_project 2 56351589 56353556 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010077.1 MGP_CASTEiJ_G0008265.1 mouse_genomes_project 2 7747580 7747676 + Mir466d miRNA miRNA MGP_CASTEiJ_T0013043.1 MGP_CASTEiJ_G0011206.1 mouse_genomes_project 2 15683909 15684388 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057615.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133155872 133311918 - MGP_CASTEiJ_P0057615 4930402H24Rik protein_coding protein_coding MGP_CASTEiJ_T0057616.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133158797 133311471 - MGP_CASTEiJ_P0057616 4930402H24Rik protein_coding protein_coding MGP_CASTEiJ_T0057617.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133160519 133173093 - MGP_CASTEiJ_P0057617 4930402H24Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057618.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133161991 133185996 - MGP_CASTEiJ_P0057618 4930402H24Rik protein_coding protein_coding MGP_CASTEiJ_T0057619.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133173002 133186263 - 4930402H24Rik protein_coding processed_transcript MGP_CASTEiJ_T0057620.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133192507 133197050 - 4930402H24Rik protein_coding retained_intron MGP_CASTEiJ_T0057621.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133196549 133216176 - 4930402H24Rik protein_coding processed_transcript MGP_CASTEiJ_T0057622.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133196560 133231564 - MGP_CASTEiJ_P0057622 4930402H24Rik protein_coding protein_coding MGP_CASTEiJ_T0057623.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133207203 133311916 - 4930402H24Rik protein_coding retained_intron MGP_CASTEiJ_T0057624.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133238080 133239157 - 4930402H24Rik protein_coding processed_transcript MGP_CASTEiJ_T0057625.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133238277 133279770 - 4930402H24Rik protein_coding processed_transcript MGP_CASTEiJ_T0057626.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133243939 133311895 - 4930402H24Rik protein_coding retained_intron MGP_CASTEiJ_T0057627.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133270163 133283359 - 4930402H24Rik protein_coding processed_transcript MGP_CASTEiJ_T0057628.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133273900 133311929 - MGP_CASTEiJ_P0057628 4930402H24Rik protein_coding protein_coding MGP_CASTEiJ_T0057629.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133279737 133311921 - MGP_CASTEiJ_P0057629 4930402H24Rik protein_coding protein_coding MGP_CASTEiJ_T0057630.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133279772 133311918 - MGP_CASTEiJ_P0057630 4930402H24Rik protein_coding protein_coding MGP_CASTEiJ_T0057631.1 MGP_CASTEiJ_G0025696.1 mouse_genomes_project 2 133281738 133381554 - MGP_CASTEiJ_P0057631 4930402H24Rik protein_coding protein_coding MGP_CASTEiJ_T0017012.1 MGP_CASTEiJ_G0014724.1 mouse_genomes_project 2 28604880 28611746 - Gm14488 processed_transcript processed_transcript MGP_CASTEiJ_T0017013.1 MGP_CASTEiJ_G0014724.1 mouse_genomes_project 2 28604883 28608793 - Gm14488 processed_transcript retained_intron MGP_CASTEiJ_T0057415.1 MGP_CASTEiJ_G0025643.1 mouse_genomes_project 2 129863714 129875972 - MGP_CASTEiJ_P0057415 Zfp661 protein_coding protein_coding MGP_CASTEiJ_T0057416.1 MGP_CASTEiJ_G0025643.1 mouse_genomes_project 2 129864584 129873523 - MGP_CASTEiJ_P0057416 Zfp661 protein_coding protein_coding MGP_CASTEiJ_T0057417.1 MGP_CASTEiJ_G0025643.1 mouse_genomes_project 2 129864591 129873531 - MGP_CASTEiJ_P0057417 Zfp661 protein_coding protein_coding MGP_CASTEiJ_T0057418.1 MGP_CASTEiJ_G0025643.1 mouse_genomes_project 2 129865991 129870364 - MGP_CASTEiJ_P0057418 Zfp661 protein_coding protein_coding MGP_CASTEiJ_T0055986.1 MGP_CASTEiJ_G0025333.1 mouse_genomes_project 2 92139157 92144748 + MGP_CASTEiJ_P0055986 Pacsin3 protein_coding protein_coding MGP_CASTEiJ_T0055987.1 MGP_CASTEiJ_G0025333.1 mouse_genomes_project 2 92139318 92140332 + Pacsin3 protein_coding retained_intron MGP_CASTEiJ_T0055988.1 MGP_CASTEiJ_G0025333.1 mouse_genomes_project 2 92139347 92143720 + MGP_CASTEiJ_P0055988 Pacsin3 protein_coding protein_coding MGP_CASTEiJ_T0055989.1 MGP_CASTEiJ_G0025333.1 mouse_genomes_project 2 92139365 92149841 + MGP_CASTEiJ_P0055989 Pacsin3 protein_coding protein_coding MGP_CASTEiJ_T0055990.1 MGP_CASTEiJ_G0025333.1 mouse_genomes_project 2 92140016 92144425 + MGP_CASTEiJ_P0055990 Pacsin3 protein_coding protein_coding MGP_CASTEiJ_T0055991.1 MGP_CASTEiJ_G0025333.1 mouse_genomes_project 2 92140016 92149840 + MGP_CASTEiJ_P0055991 Pacsin3 protein_coding protein_coding MGP_CASTEiJ_T0055992.1 MGP_CASTEiJ_G0025333.1 mouse_genomes_project 2 92140016 92149841 + MGP_CASTEiJ_P0055992 Pacsin3 protein_coding protein_coding MGP_CASTEiJ_T0055993.1 MGP_CASTEiJ_G0025333.1 mouse_genomes_project 2 92140041 92144514 + MGP_CASTEiJ_P0055993 Pacsin3 protein_coding protein_coding MGP_CASTEiJ_T0055994.1 MGP_CASTEiJ_G0025333.1 mouse_genomes_project 2 92140532 92149841 + MGP_CASTEiJ_P0055994 Pacsin3 protein_coding protein_coding MGP_CASTEiJ_T0055995.1 MGP_CASTEiJ_G0025333.1 mouse_genomes_project 2 92140538 92144480 + MGP_CASTEiJ_P0055995 Pacsin3 protein_coding protein_coding MGP_CASTEiJ_T0055996.1 MGP_CASTEiJ_G0025333.1 mouse_genomes_project 2 92142384 92143408 + Pacsin3 protein_coding processed_transcript MGP_CASTEiJ_T0055997.1 MGP_CASTEiJ_G0025333.1 mouse_genomes_project 2 92143007 92144777 + MGP_CASTEiJ_P0055997 Pacsin3 protein_coding protein_coding MGP_CASTEiJ_T0055998.1 MGP_CASTEiJ_G0025333.1 mouse_genomes_project 2 92143983 92144848 + Pacsin3 protein_coding retained_intron MGP_CASTEiJ_T0055999.1 MGP_CASTEiJ_G0025333.1 mouse_genomes_project 2 92148074 92148695 + Pacsin3 protein_coding retained_intron MGP_CASTEiJ_T0056000.1 MGP_CASTEiJ_G0025333.1 mouse_genomes_project 2 92148267 92149521 + MGP_CASTEiJ_P0056000 Pacsin3 protein_coding protein_coding MGP_CASTEiJ_T0013206.1 MGP_CASTEiJ_G0011369.1 mouse_genomes_project 2 80725931 80726616 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055649.1 MGP_CASTEiJ_G0025151.1 mouse_genomes_project 2 86674319 86675512 - MGP_CASTEiJ_P0055649 Olfr1046 protein_coding protein_coding MGP_CASTEiJ_T0054997.1 MGP_CASTEiJ_G0024991.1 mouse_genomes_project 2 68588377 68602549 - MGP_CASTEiJ_P0054997 Spc25 protein_coding protein_coding MGP_CASTEiJ_T0054998.1 MGP_CASTEiJ_G0024991.1 mouse_genomes_project 2 68588381 68602576 - MGP_CASTEiJ_P0054998 Spc25 protein_coding protein_coding MGP_CASTEiJ_T0054999.1 MGP_CASTEiJ_G0024991.1 mouse_genomes_project 2 68591696 68602599 - MGP_CASTEiJ_P0054999 Spc25 protein_coding protein_coding MGP_CASTEiJ_T0055000.1 MGP_CASTEiJ_G0024991.1 mouse_genomes_project 2 68594391 68602542 - Spc25 protein_coding processed_transcript MGP_CASTEiJ_T0055001.1 MGP_CASTEiJ_G0024991.1 mouse_genomes_project 2 68595390 68601644 - Spc25 protein_coding processed_transcript MGP_CASTEiJ_T0055002.1 MGP_CASTEiJ_G0024991.1 mouse_genomes_project 2 68602056 68602598 - Spc25 protein_coding processed_transcript MGP_CASTEiJ_T0057805.1 MGP_CASTEiJ_G0025733.1 mouse_genomes_project 2 137273171 137329733 - MGP_CASTEiJ_P0057805 Tmx4 protein_coding protein_coding MGP_CASTEiJ_T0057806.1 MGP_CASTEiJ_G0025733.1 mouse_genomes_project 2 137277458 137329349 - MGP_CASTEiJ_P0057806 Tmx4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057807.1 MGP_CASTEiJ_G0025733.1 mouse_genomes_project 2 137277986 137329720 - Tmx4 protein_coding processed_transcript MGP_CASTEiJ_T0057808.1 MGP_CASTEiJ_G0025733.1 mouse_genomes_project 2 137325116 137329678 - MGP_CASTEiJ_P0057808 Tmx4 protein_coding protein_coding MGP_CASTEiJ_T0006998.1 MGP_CASTEiJ_G0005754.1 mouse_genomes_project 2 34483957 34484678 + Gm13431 lincRNA lincRNA MGP_CASTEiJ_T0006999.1 MGP_CASTEiJ_G0005754.1 mouse_genomes_project 2 34484005 34490189 + Gm13431 lincRNA lincRNA MGP_CASTEiJ_T0007000.1 MGP_CASTEiJ_G0005754.1 mouse_genomes_project 2 34487662 34490096 + Gm13431 lincRNA lincRNA MGP_CASTEiJ_T0055695.1 MGP_CASTEiJ_G0025196.1 mouse_genomes_project 2 87986613 87987380 - MGP_CASTEiJ_P0055695 Olfr1129 protein_coding protein_coding MGP_CASTEiJ_T0010137.1 MGP_CASTEiJ_G0008325.1 mouse_genomes_project 2 67121693 67121791 + Mir6335 miRNA miRNA MGP_CASTEiJ_T0013368.1 MGP_CASTEiJ_G0011531.1 mouse_genomes_project 2 146162221 146163022 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059435.1 MGP_CASTEiJ_G0026108.1 mouse_genomes_project 2 174251672 174551879 + MGP_CASTEiJ_P0059435 Tshz2 protein_coding protein_coding MGP_CASTEiJ_T0059436.1 MGP_CASTEiJ_G0026108.1 mouse_genomes_project 2 174252326 174526130 + MGP_CASTEiJ_P0059436 Tshz2 protein_coding protein_coding MGP_CASTEiJ_T0059437.1 MGP_CASTEiJ_G0026108.1 mouse_genomes_project 2 174422703 174530760 + MGP_CASTEiJ_P0059437 Tshz2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059438.1 MGP_CASTEiJ_G0026108.1 mouse_genomes_project 2 174522511 174729364 + MGP_CASTEiJ_P0059438 Tshz2 protein_coding protein_coding MGP_CASTEiJ_T0059439.1 MGP_CASTEiJ_G0026108.1 mouse_genomes_project 2 174522511 174729364 + MGP_CASTEiJ_P0059439 Tshz2 protein_coding protein_coding MGP_CASTEiJ_T0059440.1 MGP_CASTEiJ_G0026108.1 mouse_genomes_project 2 174523453 174551879 + MGP_CASTEiJ_P0059440 Tshz2 protein_coding protein_coding MGP_CASTEiJ_T0059399.1 MGP_CASTEiJ_G0026101.1 mouse_genomes_project 2 172690641 172692602 + MGP_CASTEiJ_P0059399 Mocs3 protein_coding protein_coding MGP_CASTEiJ_T0053619.1 MGP_CASTEiJ_G0024753.1 mouse_genomes_project 2 28004855 28007444 + MGP_CASTEiJ_P0053619 Endog protein_coding protein_coding MGP_CASTEiJ_T0054040.1 MGP_CASTEiJ_G0024813.1 mouse_genomes_project 2 30731889 30745008 - MGP_CASTEiJ_P0054040 Fpgs protein_coding protein_coding MGP_CASTEiJ_T0054041.1 MGP_CASTEiJ_G0024813.1 mouse_genomes_project 2 30731890 30744958 - Fpgs protein_coding retained_intron MGP_CASTEiJ_T0054042.1 MGP_CASTEiJ_G0024813.1 mouse_genomes_project 2 30732097 30735211 - Fpgs protein_coding retained_intron MGP_CASTEiJ_T0054043.1 MGP_CASTEiJ_G0024813.1 mouse_genomes_project 2 30732582 30734259 - Fpgs protein_coding processed_transcript MGP_CASTEiJ_T0054044.1 MGP_CASTEiJ_G0024813.1 mouse_genomes_project 2 30735756 30736757 - Fpgs protein_coding retained_intron MGP_CASTEiJ_T0054045.1 MGP_CASTEiJ_G0024813.1 mouse_genomes_project 2 30736103 30757129 - MGP_CASTEiJ_P0054045 Fpgs protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054046.1 MGP_CASTEiJ_G0024813.1 mouse_genomes_project 2 30736268 30737092 - Fpgs protein_coding retained_intron MGP_CASTEiJ_T0054047.1 MGP_CASTEiJ_G0024813.1 mouse_genomes_project 2 30736670 30757137 - MGP_CASTEiJ_P0054047 Fpgs protein_coding protein_coding MGP_CASTEiJ_T0054048.1 MGP_CASTEiJ_G0024813.1 mouse_genomes_project 2 30743273 30744067 - Fpgs protein_coding retained_intron MGP_CASTEiJ_T0054049.1 MGP_CASTEiJ_G0024813.1 mouse_genomes_project 2 30743535 30757023 - MGP_CASTEiJ_P0054049 Fpgs protein_coding protein_coding MGP_CASTEiJ_T0011172.1 MGP_CASTEiJ_G0009360.1 mouse_genomes_project 2 67881871 67882113 + Gm26321 misc_RNA misc_RNA MGP_CASTEiJ_T0055730.1 MGP_CASTEiJ_G0025221.1 mouse_genomes_project 2 88487477 88488449 - MGP_CASTEiJ_P0055730 Olfr1156 protein_coding protein_coding MGP_CASTEiJ_T0013218.1 MGP_CASTEiJ_G0011381.1 mouse_genomes_project 2 83995851 83997104 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010162.1 MGP_CASTEiJ_G0008350.1 mouse_genomes_project 2 115728368 115728423 - Mir7002 miRNA miRNA MGP_CASTEiJ_T0017084.1 MGP_CASTEiJ_G0014768.1 mouse_genomes_project 2 114952698 114963920 + Gm13965 processed_transcript processed_transcript MGP_CASTEiJ_T0013084.1 MGP_CASTEiJ_G0011247.1 mouse_genomes_project 2 33168048 33168215 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055628.1 MGP_CASTEiJ_G0025131.1 mouse_genomes_project 2 86177578 86178508 - MGP_CASTEiJ_P0055628 Olfr1016 protein_coding protein_coding MGP_CASTEiJ_T0056019.1 MGP_CASTEiJ_G0025337.1 mouse_genomes_project 2 92438818 92537511 + MGP_CASTEiJ_P0056019 Ckap5 protein_coding protein_coding MGP_CASTEiJ_T0056020.1 MGP_CASTEiJ_G0025337.1 mouse_genomes_project 2 92439034 92468518 + Ckap5 protein_coding processed_transcript MGP_CASTEiJ_T0056021.1 MGP_CASTEiJ_G0025337.1 mouse_genomes_project 2 92459356 92478331 + Ckap5 protein_coding retained_intron MGP_CASTEiJ_T0056022.1 MGP_CASTEiJ_G0025337.1 mouse_genomes_project 2 92459358 92537509 + MGP_CASTEiJ_P0056022 Ckap5 protein_coding protein_coding MGP_CASTEiJ_T0056023.1 MGP_CASTEiJ_G0025337.1 mouse_genomes_project 2 92459358 92537509 + MGP_CASTEiJ_P0056023 Ckap5 protein_coding protein_coding MGP_CASTEiJ_T0056024.1 MGP_CASTEiJ_G0025337.1 mouse_genomes_project 2 92459369 92537510 + MGP_CASTEiJ_P0056024 Ckap5 protein_coding protein_coding MGP_CASTEiJ_T0056025.1 MGP_CASTEiJ_G0025337.1 mouse_genomes_project 2 92468393 92478334 + Ckap5 protein_coding retained_intron MGP_CASTEiJ_T0056026.1 MGP_CASTEiJ_G0025337.1 mouse_genomes_project 2 92509052 92524674 + Ckap5 protein_coding processed_transcript MGP_CASTEiJ_T0056027.1 MGP_CASTEiJ_G0025337.1 mouse_genomes_project 2 92510375 92517864 + Ckap5 protein_coding retained_intron MGP_CASTEiJ_T0013351.1 MGP_CASTEiJ_G0011514.1 mouse_genomes_project 2 135287135 135288306 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058867.1 MGP_CASTEiJ_G0025977.1 mouse_genomes_project 2 162467038 162482247 + Actr5 protein_coding retained_intron MGP_CASTEiJ_T0058868.1 MGP_CASTEiJ_G0025977.1 mouse_genomes_project 2 162467038 162471339 + Actr5 protein_coding retained_intron MGP_CASTEiJ_T0058869.1 MGP_CASTEiJ_G0025977.1 mouse_genomes_project 2 162467038 162482247 + MGP_CASTEiJ_P0058869 Actr5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058870.1 MGP_CASTEiJ_G0025977.1 mouse_genomes_project 2 162467038 162482274 + MGP_CASTEiJ_P0058870 Actr5 protein_coding protein_coding MGP_CASTEiJ_T0058871.1 MGP_CASTEiJ_G0025977.1 mouse_genomes_project 2 162473843 162480411 + Actr5 protein_coding processed_transcript MGP_CASTEiJ_T0100864.1 MGP_CASTEiJ_G0037777.1 mouse_genomes_project 2 30722291 30722428 + Gm26236 snoRNA snoRNA MGP_CASTEiJ_T0057888.1 MGP_CASTEiJ_G0025750.1 mouse_genomes_project 2 143118939 143284853 - MGP_CASTEiJ_P0057888 Sel1l2 protein_coding protein_coding MGP_CASTEiJ_T0057889.1 MGP_CASTEiJ_G0025750.1 mouse_genomes_project 2 143195608 143198917 - Sel1l2 protein_coding processed_transcript MGP_CASTEiJ_T0057890.1 MGP_CASTEiJ_G0025750.1 mouse_genomes_project 2 143195613 143284855 - MGP_CASTEiJ_P0057890 Sel1l2 protein_coding protein_coding MGP_CASTEiJ_T0059512.1 MGP_CASTEiJ_G0026133.1 mouse_genomes_project 2 178536819 178544458 + MGP_CASTEiJ_P0059512 1700021F07Rik protein_coding protein_coding MGP_CASTEiJ_T0006949.1 MGP_CASTEiJ_G0005718.1 mouse_genomes_project 2 6544562 6601992 + Gm13219 lincRNA lincRNA MGP_CASTEiJ_T0006950.1 MGP_CASTEiJ_G0005718.1 mouse_genomes_project 2 6544621 6642126 + Gm13219 lincRNA lincRNA MGP_CASTEiJ_T0006951.1 MGP_CASTEiJ_G0005718.1 mouse_genomes_project 2 6544651 6603360 + Gm13219 lincRNA lincRNA MGP_CASTEiJ_T0056407.1 MGP_CASTEiJ_G0025405.1 mouse_genomes_project 2 105995743 105998125 - MGP_CASTEiJ_P0056407 Pin1rt1 protein_coding protein_coding MGP_CASTEiJ_T0056087.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93044479 93339664 + MGP_CASTEiJ_P0056087 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056088.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93044479 93339664 + MGP_CASTEiJ_P0056088 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056089.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93150535 93336827 + MGP_CASTEiJ_P0056089 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056090.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93150604 93336833 + MGP_CASTEiJ_P0056090 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056091.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93150697 93182317 + Phf21a protein_coding processed_transcript MGP_CASTEiJ_T0056092.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93150705 93335841 + MGP_CASTEiJ_P0056092 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056093.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93150705 93292097 + MGP_CASTEiJ_P0056093 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056094.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93150731 93182822 + Phf21a protein_coding retained_intron MGP_CASTEiJ_T0056095.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93150731 93189814 + MGP_CASTEiJ_P0056095 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056096.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93152880 93189817 + MGP_CASTEiJ_P0056096 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056097.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93152904 93335849 + MGP_CASTEiJ_P0056097 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056098.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93153886 93189829 + MGP_CASTEiJ_P0056098 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056099.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93182276 93198103 + MGP_CASTEiJ_P0056099 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056100.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93183641 93339664 + MGP_CASTEiJ_P0056100 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056101.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93183654 93339664 + MGP_CASTEiJ_P0056101 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056102.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93183654 93339664 + MGP_CASTEiJ_P0056102 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056103.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93189794 93298910 + MGP_CASTEiJ_P0056103 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056104.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93198106 93335378 + MGP_CASTEiJ_P0056104 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056105.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93292256 93302534 + MGP_CASTEiJ_P0056105 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056106.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93302562 93334119 + MGP_CASTEiJ_P0056106 Phf21a protein_coding protein_coding MGP_CASTEiJ_T0056107.1 MGP_CASTEiJ_G0025349.1 mouse_genomes_project 2 93323853 93331933 + Phf21a protein_coding retained_intron MGP_CASTEiJ_T0056223.1 MGP_CASTEiJ_G0025370.1 mouse_genomes_project 2 95125850 95162839 - Hsd17b12 protein_coding processed_transcript MGP_CASTEiJ_T0056224.1 MGP_CASTEiJ_G0025370.1 mouse_genomes_project 2 95125850 95253153 - MGP_CASTEiJ_P0056224 Hsd17b12 protein_coding protein_coding MGP_CASTEiJ_T0056225.1 MGP_CASTEiJ_G0025370.1 mouse_genomes_project 2 95125863 95253096 - Hsd17b12 protein_coding processed_transcript MGP_CASTEiJ_T0056226.1 MGP_CASTEiJ_G0025370.1 mouse_genomes_project 2 95126681 95163142 - Hsd17b12 protein_coding processed_transcript MGP_CASTEiJ_T0056227.1 MGP_CASTEiJ_G0025370.1 mouse_genomes_project 2 95208517 95253080 - Hsd17b12 protein_coding processed_transcript MGP_CASTEiJ_T0055688.1 MGP_CASTEiJ_G0025189.1 mouse_genomes_project 2 87839270 87841616 + MGP_CASTEiJ_P0055688 protein_coding protein_coding MGP_CASTEiJ_T0007076.1 MGP_CASTEiJ_G0005820.1 mouse_genomes_project 2 93749486 93771547 + Gm13816 lincRNA lincRNA MGP_CASTEiJ_T0052938.1 MGP_CASTEiJ_G0024634.1 mouse_genomes_project 2 22822077 22823120 + MGP_CASTEiJ_P0052938 Tmem210 protein_coding protein_coding MGP_CASTEiJ_T0052939.1 MGP_CASTEiJ_G0024634.1 mouse_genomes_project 2 22822133 22823122 + Tmem210 protein_coding processed_transcript MGP_CASTEiJ_T0054034.1 MGP_CASTEiJ_G0024812.1 mouse_genomes_project 2 30690238 30731399 + MGP_CASTEiJ_P0054034 Eng protein_coding protein_coding MGP_CASTEiJ_T0054035.1 MGP_CASTEiJ_G0024812.1 mouse_genomes_project 2 30690238 30731939 + MGP_CASTEiJ_P0054035 Eng protein_coding protein_coding MGP_CASTEiJ_T0054036.1 MGP_CASTEiJ_G0024812.1 mouse_genomes_project 2 30690265 30731950 + MGP_CASTEiJ_P0054036 Eng protein_coding protein_coding MGP_CASTEiJ_T0054037.1 MGP_CASTEiJ_G0024812.1 mouse_genomes_project 2 30690636 30694056 + Eng protein_coding processed_transcript MGP_CASTEiJ_T0054038.1 MGP_CASTEiJ_G0024812.1 mouse_genomes_project 2 30720025 30720928 + Eng protein_coding retained_intron MGP_CASTEiJ_T0054039.1 MGP_CASTEiJ_G0024812.1 mouse_genomes_project 2 30720548 30730536 + MGP_CASTEiJ_P0054039 Eng protein_coding protein_coding MGP_CASTEiJ_T0010145.1 MGP_CASTEiJ_G0008333.1 mouse_genomes_project 2 85015979 85016043 - Mir130a miRNA miRNA MGP_CASTEiJ_T0059881.1 MGP_CASTEiJ_G0026207.1 mouse_genomes_project 2 184565150 184566953 - MGP_CASTEiJ_P0059881 Sox18 protein_coding protein_coding MGP_CASTEiJ_T0059759.1 MGP_CASTEiJ_G0026188.1 mouse_genomes_project 2 184051915 184061090 - MGP_CASTEiJ_P0059759 Ptk6 protein_coding protein_coding MGP_CASTEiJ_T0053343.1 MGP_CASTEiJ_G0024709.1 mouse_genomes_project 2 24823392 24868785 - Sardh protein_coding processed_transcript MGP_CASTEiJ_T0053344.1 MGP_CASTEiJ_G0024709.1 mouse_genomes_project 2 24823392 24882969 - MGP_CASTEiJ_P0053344 Sardh protein_coding protein_coding MGP_CASTEiJ_T0053345.1 MGP_CASTEiJ_G0024709.1 mouse_genomes_project 2 24824196 24827286 - Sardh protein_coding retained_intron MGP_CASTEiJ_T0053346.1 MGP_CASTEiJ_G0024709.1 mouse_genomes_project 2 24824381 24844517 - Sardh protein_coding processed_transcript MGP_CASTEiJ_T0053347.1 MGP_CASTEiJ_G0024709.1 mouse_genomes_project 2 24831640 24853480 - Sardh protein_coding retained_intron MGP_CASTEiJ_T0053348.1 MGP_CASTEiJ_G0024709.1 mouse_genomes_project 2 24845635 24850232 - Sardh protein_coding processed_transcript MGP_CASTEiJ_T0053349.1 MGP_CASTEiJ_G0024709.1 mouse_genomes_project 2 24845671 24861267 - Sardh protein_coding retained_intron MGP_CASTEiJ_T0053350.1 MGP_CASTEiJ_G0024709.1 mouse_genomes_project 2 24877360 24882551 - MGP_CASTEiJ_P0053350 Sardh protein_coding protein_coding MGP_CASTEiJ_T0053351.1 MGP_CASTEiJ_G0024709.1 mouse_genomes_project 2 24877378 24884044 - MGP_CASTEiJ_P0053351 Sardh protein_coding protein_coding MGP_CASTEiJ_T0053352.1 MGP_CASTEiJ_G0024709.1 mouse_genomes_project 2 24880146 24883117 - MGP_CASTEiJ_P0053352 Sardh protein_coding protein_coding MGP_CASTEiJ_T0013141.1 MGP_CASTEiJ_G0011304.1 mouse_genomes_project 2 54850195 54852613 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055568.1 MGP_CASTEiJ_G0025105.1 mouse_genomes_project 2 85124907 85150808 + MGP_CASTEiJ_P0055568 Slc43a1 protein_coding protein_coding MGP_CASTEiJ_T0055569.1 MGP_CASTEiJ_G0025105.1 mouse_genomes_project 2 85125452 85137353 + MGP_CASTEiJ_P0055569 Slc43a1 protein_coding protein_coding MGP_CASTEiJ_T0055570.1 MGP_CASTEiJ_G0025105.1 mouse_genomes_project 2 85125465 85150816 + MGP_CASTEiJ_P0055570 Slc43a1 protein_coding protein_coding MGP_CASTEiJ_T0055571.1 MGP_CASTEiJ_G0025105.1 mouse_genomes_project 2 85125474 85149618 + Slc43a1 protein_coding retained_intron MGP_CASTEiJ_T0055572.1 MGP_CASTEiJ_G0025105.1 mouse_genomes_project 2 85126257 85150811 + MGP_CASTEiJ_P0055572 Slc43a1 protein_coding protein_coding MGP_CASTEiJ_T0055573.1 MGP_CASTEiJ_G0025105.1 mouse_genomes_project 2 85126683 85150824 + MGP_CASTEiJ_P0055573 Slc43a1 protein_coding protein_coding MGP_CASTEiJ_T0010081.1 MGP_CASTEiJ_G0008269.1 mouse_genomes_project 2 7751753 7751847 + Mir466n miRNA miRNA MGP_CASTEiJ_T0099663.1 MGP_CASTEiJ_G0036576.1 mouse_genomes_project 2 136224350 136224457 - Gm25258 snRNA snRNA MGP_CASTEiJ_T0058122.1 MGP_CASTEiJ_G0025812.1 mouse_genomes_project 2 154047031 154057102 - Abhd12 protein_coding processed_transcript MGP_CASTEiJ_T0058123.1 MGP_CASTEiJ_G0025812.1 mouse_genomes_project 2 154047031 154118727 - MGP_CASTEiJ_P0058123 Abhd12 protein_coding protein_coding MGP_CASTEiJ_T0058124.1 MGP_CASTEiJ_G0025812.1 mouse_genomes_project 2 154047055 154118717 - MGP_CASTEiJ_P0058124 Abhd12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058125.1 MGP_CASTEiJ_G0025812.1 mouse_genomes_project 2 154047654 154054255 - MGP_CASTEiJ_P0058125 Abhd12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058126.1 MGP_CASTEiJ_G0025812.1 mouse_genomes_project 2 154051888 154118648 - Abhd12 protein_coding processed_transcript MGP_CASTEiJ_T0058127.1 MGP_CASTEiJ_G0025812.1 mouse_genomes_project 2 154057559 154065993 - Abhd12 protein_coding retained_intron MGP_CASTEiJ_T0058128.1 MGP_CASTEiJ_G0025812.1 mouse_genomes_project 2 154060865 154118633 - MGP_CASTEiJ_P0058128 Abhd12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058129.1 MGP_CASTEiJ_G0025812.1 mouse_genomes_project 2 154068762 154118572 - MGP_CASTEiJ_P0058129 Abhd12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0013047.1 MGP_CASTEiJ_G0011210.1 mouse_genomes_project 2 16111677 16111939 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013086.1 MGP_CASTEiJ_G0011249.1 mouse_genomes_project 2 33739730 33740037 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056613.1 MGP_CASTEiJ_G0025483.1 mouse_genomes_project 2 115622620 115628262 - MGP_CASTEiJ_P0056613 Actc1 protein_coding protein_coding MGP_CASTEiJ_T0056614.1 MGP_CASTEiJ_G0025483.1 mouse_genomes_project 2 115627263 115628931 - MGP_CASTEiJ_P0056614 Actc1 protein_coding protein_coding MGP_CASTEiJ_T0099652.1 MGP_CASTEiJ_G0036565.1 mouse_genomes_project 2 118978737 118978901 + Gm25189 snRNA snRNA MGP_CASTEiJ_T0059194.1 MGP_CASTEiJ_G0026064.1 mouse_genomes_project 2 169309247 169439104 - MGP_CASTEiJ_P0059194 Cdh22 protein_coding protein_coding MGP_CASTEiJ_T0059195.1 MGP_CASTEiJ_G0026064.1 mouse_genomes_project 2 169310067 169382444 - MGP_CASTEiJ_P0059195 Cdh22 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055781.1 MGP_CASTEiJ_G0025268.1 mouse_genomes_project 2 89940301 89941237 - MGP_CASTEiJ_P0055781 Olfr1221 protein_coding protein_coding MGP_CASTEiJ_T0017055.1 MGP_CASTEiJ_G0014755.1 mouse_genomes_project 2 91760510 91774813 - Ptpmt1 processed_transcript processed_transcript MGP_CASTEiJ_T0017056.1 MGP_CASTEiJ_G0014755.1 mouse_genomes_project 2 91762507 91775214 - Ptpmt1 processed_transcript processed_transcript MGP_CASTEiJ_T0017057.1 MGP_CASTEiJ_G0014755.1 mouse_genomes_project 2 91762507 91775006 - Ptpmt1 processed_transcript processed_transcript MGP_CASTEiJ_T0017058.1 MGP_CASTEiJ_G0014755.1 mouse_genomes_project 2 91762788 91774551 - Ptpmt1 processed_transcript processed_transcript MGP_CASTEiJ_T0017059.1 MGP_CASTEiJ_G0014755.1 mouse_genomes_project 2 91770986 91774624 - Ptpmt1 processed_transcript processed_transcript MGP_CASTEiJ_T0053762.1 MGP_CASTEiJ_G0024774.1 mouse_genomes_project 2 28880482 28895371 - MGP_CASTEiJ_P0053762 Tor1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0053770.1 MGP_CASTEiJ_G0024774.1 mouse_genomes_project 2 28888164 28895409 - MGP_CASTEiJ_P0053770 Tor1a protein_coding protein_coding MGP_CASTEiJ_T0053771.1 MGP_CASTEiJ_G0024774.1 mouse_genomes_project 2 28888217 28895348 - Tor1a protein_coding retained_intron MGP_CASTEiJ_T0053772.1 MGP_CASTEiJ_G0024774.1 mouse_genomes_project 2 28888549 28891334 - Tor1a protein_coding retained_intron MGP_CASTEiJ_T0053773.1 MGP_CASTEiJ_G0024774.1 mouse_genomes_project 2 28888590 28891361 - Tor1a protein_coding retained_intron MGP_CASTEiJ_T0053774.1 MGP_CASTEiJ_G0024774.1 mouse_genomes_project 2 28894386 28895364 - Tor1a protein_coding retained_intron MGP_CASTEiJ_T0007144.1 MGP_CASTEiJ_G0005872.1 mouse_genomes_project 2 135197612 135256133 + AU019990 lincRNA lincRNA MGP_CASTEiJ_T0007145.1 MGP_CASTEiJ_G0005872.1 mouse_genomes_project 2 135197612 135258857 + AU019990 lincRNA lincRNA MGP_CASTEiJ_T0010203.1 MGP_CASTEiJ_G0008391.1 mouse_genomes_project 2 179299324 179299392 + Gm27591 miRNA miRNA MGP_CASTEiJ_T0056669.1 MGP_CASTEiJ_G0025493.1 mouse_genomes_project 2 119889666 119904922 + MGP_CASTEiJ_P0056669 Thbs1 protein_coding protein_coding MGP_CASTEiJ_T0056670.1 MGP_CASTEiJ_G0025493.1 mouse_genomes_project 2 119889801 119943590 + MGP_CASTEiJ_P0056670 Thbs1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056671.1 MGP_CASTEiJ_G0025493.1 mouse_genomes_project 2 119900728 119901553 + Thbs1 protein_coding processed_transcript MGP_CASTEiJ_T0000984.1 MGP_CASTEiJ_G0000920.1 mouse_genomes_project 2 7273455 7275133 + TEC TEC MGP_CASTEiJ_T0054350.1 MGP_CASTEiJ_G0024862.1 mouse_genomes_project 2 34675620 34676559 + MGP_CASTEiJ_P0054350 Olfr340 protein_coding protein_coding MGP_CASTEiJ_T0013227.1 MGP_CASTEiJ_G0011390.1 mouse_genomes_project 2 87682866 87686704 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055767.1 MGP_CASTEiJ_G0025256.1 mouse_genomes_project 2 89720723 89721656 - MGP_CASTEiJ_P0055767 Olfr1209 protein_coding protein_coding MGP_CASTEiJ_T0055682.1 MGP_CASTEiJ_G0025183.1 mouse_genomes_project 2 87607518 87608457 - MGP_CASTEiJ_P0055682 Olfr1109 protein_coding protein_coding MGP_CASTEiJ_T0059775.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184185496 184223680 + MGP_CASTEiJ_P0059775 Rtel1 protein_coding protein_coding MGP_CASTEiJ_T0059776.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184185510 184214517 + Rtel1 protein_coding retained_intron MGP_CASTEiJ_T0059777.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184185519 184223642 + Rtel1 protein_coding retained_intron MGP_CASTEiJ_T0059778.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184185519 184223680 + MGP_CASTEiJ_P0059778 Rtel1 protein_coding protein_coding MGP_CASTEiJ_T0059779.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184185542 184223680 + MGP_CASTEiJ_P0059779 Rtel1 protein_coding protein_coding MGP_CASTEiJ_T0059780.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184185542 184223680 + MGP_CASTEiJ_P0059780 Rtel1 protein_coding protein_coding MGP_CASTEiJ_T0059781.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184185542 184223642 + MGP_CASTEiJ_P0059781 Rtel1 protein_coding protein_coding MGP_CASTEiJ_T0059782.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184185720 184189460 + MGP_CASTEiJ_P0059782 Rtel1 protein_coding protein_coding MGP_CASTEiJ_T0059783.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184194378 184223680 + MGP_CASTEiJ_P0059783 Rtel1 protein_coding protein_coding MGP_CASTEiJ_T0059784.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184201248 184223687 + MGP_CASTEiJ_P0059784 Rtel1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059785.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184201574 184214107 + MGP_CASTEiJ_P0059785 Rtel1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059786.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184205810 184214090 + Rtel1 protein_coding retained_intron MGP_CASTEiJ_T0059787.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184216517 184217018 + Rtel1 protein_coding retained_intron MGP_CASTEiJ_T0059788.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184217080 184219127 + Rtel1 protein_coding retained_intron MGP_CASTEiJ_T0059789.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184217190 184218219 + Rtel1 protein_coding retained_intron MGP_CASTEiJ_T0059790.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184219145 184222616 + Rtel1 protein_coding retained_intron MGP_CASTEiJ_T0059791.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184221463 184222877 + Rtel1 protein_coding processed_transcript MGP_CASTEiJ_T0059792.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184222266 184223081 + Rtel1 protein_coding retained_intron MGP_CASTEiJ_T0059793.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184222757 184223679 + Rtel1 protein_coding processed_transcript MGP_CASTEiJ_T0059794.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184222828 184223678 + MGP_CASTEiJ_P0059794 Rtel1 protein_coding protein_coding MGP_CASTEiJ_T0059795.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184223033 184223680 + MGP_CASTEiJ_P0059795 Rtel1 protein_coding protein_coding MGP_CASTEiJ_T0059796.1 MGP_CASTEiJ_G0026194.1 mouse_genomes_project 2 184223033 184223680 + MGP_CASTEiJ_P0059796 Rtel1 protein_coding protein_coding MGP_CASTEiJ_T0058061.1 MGP_CASTEiJ_G0025787.1 mouse_genomes_project 2 151655168 151658888 - MGP_CASTEiJ_P0058061 Thbd protein_coding protein_coding MGP_CASTEiJ_T0058386.1 MGP_CASTEiJ_G0025889.1 mouse_genomes_project 2 157748270 157767410 + MGP_CASTEiJ_P0058386 Bpifb5 protein_coding protein_coding MGP_CASTEiJ_T0003960.1 MGP_CASTEiJ_G0003518.1 mouse_genomes_project 2 131955755 131956777 - Gm14041 antisense antisense MGP_CASTEiJ_T0052244.1 MGP_CASTEiJ_G0024516.1 mouse_genomes_project 2 2057605 2073086 - Optn protein_coding processed_transcript MGP_CASTEiJ_T0052245.1 MGP_CASTEiJ_G0024516.1 mouse_genomes_project 2 2057605 2106372 - MGP_CASTEiJ_P0052245 Optn protein_coding protein_coding MGP_CASTEiJ_T0052246.1 MGP_CASTEiJ_G0024516.1 mouse_genomes_project 2 2057607 2106265 - MGP_CASTEiJ_P0052246 Optn protein_coding protein_coding MGP_CASTEiJ_T0052247.1 MGP_CASTEiJ_G0024516.1 mouse_genomes_project 2 2058262 2074384 - Optn protein_coding processed_transcript MGP_CASTEiJ_T0052248.1 MGP_CASTEiJ_G0024516.1 mouse_genomes_project 2 2083722 2106378 - Optn protein_coding processed_transcript MGP_CASTEiJ_T0100912.1 MGP_CASTEiJ_G0037825.1 mouse_genomes_project 2 147301351 147301489 - Gm26165 snoRNA snoRNA MGP_CASTEiJ_T0055686.1 MGP_CASTEiJ_G0025187.1 mouse_genomes_project 2 87711934 87712891 + MGP_CASTEiJ_P0055686 Olfr1112 protein_coding protein_coding MGP_CASTEiJ_T0010057.1 MGP_CASTEiJ_G0008245.1 mouse_genomes_project 2 7720943 7721040 + Mir669b miRNA miRNA MGP_CASTEiJ_T0056739.1 MGP_CASTEiJ_G0025509.1 mouse_genomes_project 2 120736371 120738461 + MGP_CASTEiJ_P0056739 Chst14 protein_coding protein_coding MGP_CASTEiJ_T0056740.1 MGP_CASTEiJ_G0025509.1 mouse_genomes_project 2 120736389 120738455 + MGP_CASTEiJ_P0056740 Chst14 protein_coding protein_coding MGP_CASTEiJ_T0102217.1 MGP_CASTEiJ_G0038942.1 mouse_genomes_project 2 86007724 86008669 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0057874.1 MGP_CASTEiJ_G0025746.1 mouse_genomes_project 2 142687536 142934890 - MGP_CASTEiJ_P0057874 Tasp1 protein_coding protein_coding MGP_CASTEiJ_T0057875.1 MGP_CASTEiJ_G0025746.1 mouse_genomes_project 2 142687536 142934865 - MGP_CASTEiJ_P0057875 Tasp1 protein_coding protein_coding MGP_CASTEiJ_T0057876.1 MGP_CASTEiJ_G0025746.1 mouse_genomes_project 2 142687536 142934910 - MGP_CASTEiJ_P0057876 Tasp1 protein_coding protein_coding MGP_CASTEiJ_T0057877.1 MGP_CASTEiJ_G0025746.1 mouse_genomes_project 2 142833529 142909267 - Tasp1 protein_coding retained_intron MGP_CASTEiJ_T0055749.1 MGP_CASTEiJ_G0025239.1 mouse_genomes_project 2 89079633 89080563 - MGP_CASTEiJ_P0055749 Olfr1180 protein_coding protein_coding MGP_CASTEiJ_T0007093.1 MGP_CASTEiJ_G0005831.1 mouse_genomes_project 2 104526458 104560390 - A930006I01Rik lincRNA lincRNA MGP_CASTEiJ_T0053452.1 MGP_CASTEiJ_G0024730.1 mouse_genomes_project 2 26584577 26591687 + Ddx31 protein_coding processed_transcript MGP_CASTEiJ_T0053453.1 MGP_CASTEiJ_G0024730.1 mouse_genomes_project 2 26584630 26651440 + MGP_CASTEiJ_P0053453 Ddx31 protein_coding protein_coding MGP_CASTEiJ_T0053454.1 MGP_CASTEiJ_G0024730.1 mouse_genomes_project 2 26589071 26602190 + Ddx31 protein_coding processed_transcript MGP_CASTEiJ_T0053455.1 MGP_CASTEiJ_G0024730.1 mouse_genomes_project 2 26603099 26606032 + Ddx31 protein_coding processed_transcript MGP_CASTEiJ_T0007168.1 MGP_CASTEiJ_G0005892.1 mouse_genomes_project 2 153932074 153932712 - Gm28450 lincRNA lincRNA MGP_CASTEiJ_T0054917.1 MGP_CASTEiJ_G0024975.1 mouse_genomes_project 2 64655700 64776129 - MGP_CASTEiJ_P0054917 Scn3a protein_coding protein_coding MGP_CASTEiJ_T0054918.1 MGP_CASTEiJ_G0024975.1 mouse_genomes_project 2 64656844 64776260 - MGP_CASTEiJ_P0054918 Scn3a protein_coding protein_coding MGP_CASTEiJ_T0054919.1 MGP_CASTEiJ_G0024975.1 mouse_genomes_project 2 64660474 64756620 - MGP_CASTEiJ_P0054919 Scn3a protein_coding unknown_likely_coding MGP_CASTEiJ_T0054920.1 MGP_CASTEiJ_G0024975.1 mouse_genomes_project 2 64698569 64704064 - Scn3a protein_coding processed_transcript MGP_CASTEiJ_T0054921.1 MGP_CASTEiJ_G0024975.1 mouse_genomes_project 2 64702823 64776206 - MGP_CASTEiJ_P0054921 Scn3a protein_coding unknown_likely_coding MGP_CASTEiJ_T0054922.1 MGP_CASTEiJ_G0024975.1 mouse_genomes_project 2 64733113 64738744 - MGP_CASTEiJ_P0054922 Scn3a protein_coding protein_coding MGP_CASTEiJ_T0013264.1 MGP_CASTEiJ_G0011427.1 mouse_genomes_project 2 101225892 101226076 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013213.1 MGP_CASTEiJ_G0011376.1 mouse_genomes_project 2 82879463 82879803 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059533.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179339357 179395805 + MGP_CASTEiJ_P0059533 Gnas protein_coding protein_coding MGP_CASTEiJ_T0059534.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179339357 179352263 + MGP_CASTEiJ_P0059534 Gnas protein_coding protein_coding MGP_CASTEiJ_T0059535.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179340392 179395805 + MGP_CASTEiJ_P0059535 Gnas protein_coding protein_coding MGP_CASTEiJ_T0059536.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179353229 179404091 + Gnas protein_coding processed_transcript MGP_CASTEiJ_T0059537.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179353229 179357388 + MGP_CASTEiJ_P0059537 Gnas protein_coding protein_coding MGP_CASTEiJ_T0059538.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179353229 179404301 + MGP_CASTEiJ_P0059538 Gnas protein_coding protein_coding MGP_CASTEiJ_T0059539.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179353229 179404091 + MGP_CASTEiJ_P0059539 Gnas protein_coding protein_coding MGP_CASTEiJ_T0059540.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179353229 179404333 + MGP_CASTEiJ_P0059540 Gnas protein_coding protein_coding MGP_CASTEiJ_T0059541.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179383583 179402817 + Gnas protein_coding processed_transcript MGP_CASTEiJ_T0059542.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179383712 179404091 + Gnas protein_coding processed_transcript MGP_CASTEiJ_T0059543.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179383743 179384954 + Gnas protein_coding processed_transcript MGP_CASTEiJ_T0059544.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179383770 179395805 + Gnas protein_coding processed_transcript MGP_CASTEiJ_T0059545.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179384037 179402855 + Gnas protein_coding processed_transcript MGP_CASTEiJ_T0059546.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179386022 179404333 + MGP_CASTEiJ_P0059546 Gnas protein_coding protein_coding MGP_CASTEiJ_T0059547.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179386113 179404333 + MGP_CASTEiJ_P0059547 Gnas protein_coding protein_coding MGP_CASTEiJ_T0059548.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179386303 179395805 + MGP_CASTEiJ_P0059548 Gnas protein_coding protein_coding MGP_CASTEiJ_T0059549.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179386312 179403977 + MGP_CASTEiJ_P0059549 Gnas protein_coding protein_coding MGP_CASTEiJ_T0059551.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179399280 179402985 + Gnas protein_coding retained_intron MGP_CASTEiJ_T0059552.1 MGP_CASTEiJ_G0026141.1 mouse_genomes_project 2 179402224 179403304 + Gnas protein_coding retained_intron MGP_CASTEiJ_T0056389.1 MGP_CASTEiJ_G0025402.1 mouse_genomes_project 2 105668949 105752244 - MGP_CASTEiJ_P0056389 Hipk3 protein_coding protein_coding MGP_CASTEiJ_T0056390.1 MGP_CASTEiJ_G0025402.1 mouse_genomes_project 2 105672252 105751488 - MGP_CASTEiJ_P0056390 Hipk3 protein_coding protein_coding MGP_CASTEiJ_T0056391.1 MGP_CASTEiJ_G0025402.1 mouse_genomes_project 2 105672326 105751752 - MGP_CASTEiJ_P0056391 Hipk3 protein_coding protein_coding MGP_CASTEiJ_T0056392.1 MGP_CASTEiJ_G0025402.1 mouse_genomes_project 2 105676184 105681370 - Hipk3 protein_coding processed_transcript MGP_CASTEiJ_T0057972.1 MGP_CASTEiJ_G0025769.1 mouse_genomes_project 2 147619628 147632550 + MGP_CASTEiJ_P0057972 Sec23b protein_coding protein_coding MGP_CASTEiJ_T0057973.1 MGP_CASTEiJ_G0025769.1 mouse_genomes_project 2 147619655 147654952 + MGP_CASTEiJ_P0057973 Sec23b protein_coding protein_coding MGP_CASTEiJ_T0057974.1 MGP_CASTEiJ_G0025769.1 mouse_genomes_project 2 147619680 147622802 + MGP_CASTEiJ_P0057974 Sec23b protein_coding protein_coding MGP_CASTEiJ_T0057975.1 MGP_CASTEiJ_G0025769.1 mouse_genomes_project 2 147619711 147622911 + Sec23b protein_coding processed_transcript MGP_CASTEiJ_T0057976.1 MGP_CASTEiJ_G0025769.1 mouse_genomes_project 2 147619718 147631340 + MGP_CASTEiJ_P0057976 Sec23b protein_coding protein_coding MGP_CASTEiJ_T0057977.1 MGP_CASTEiJ_G0025769.1 mouse_genomes_project 2 147619733 147629189 + MGP_CASTEiJ_P0057977 Sec23b protein_coding protein_coding MGP_CASTEiJ_T0057978.1 MGP_CASTEiJ_G0025769.1 mouse_genomes_project 2 147629435 147654952 + Sec23b protein_coding processed_transcript MGP_CASTEiJ_T0057979.1 MGP_CASTEiJ_G0025769.1 mouse_genomes_project 2 147641533 147645418 + Sec23b protein_coding processed_transcript MGP_CASTEiJ_T0053145.1 MGP_CASTEiJ_G0024674.1 mouse_genomes_project 2 23642002 23689896 - MGP_CASTEiJ_P0053145 Nacc2 protein_coding protein_coding MGP_CASTEiJ_T0053146.1 MGP_CASTEiJ_G0024674.1 mouse_genomes_project 2 23642002 23722216 - MGP_CASTEiJ_P0053146 Nacc2 protein_coding protein_coding MGP_CASTEiJ_T0053147.1 MGP_CASTEiJ_G0024674.1 mouse_genomes_project 2 23647504 23648953 - Nacc2 protein_coding processed_transcript MGP_CASTEiJ_T0053148.1 MGP_CASTEiJ_G0024674.1 mouse_genomes_project 2 23650847 23689538 - Nacc2 protein_coding processed_transcript MGP_CASTEiJ_T0053149.1 MGP_CASTEiJ_G0024674.1 mouse_genomes_project 2 23650969 23688092 - Nacc2 protein_coding processed_transcript MGP_CASTEiJ_T0053150.1 MGP_CASTEiJ_G0024674.1 mouse_genomes_project 2 23687523 23722618 - Nacc2 protein_coding processed_transcript MGP_CASTEiJ_T0053151.1 MGP_CASTEiJ_G0024674.1 mouse_genomes_project 2 23687802 23722181 - MGP_CASTEiJ_P0053151 Nacc2 protein_coding protein_coding MGP_CASTEiJ_T0053152.1 MGP_CASTEiJ_G0024674.1 mouse_genomes_project 2 23688044 23722186 - Nacc2 protein_coding processed_transcript MGP_CASTEiJ_T0013046.1 MGP_CASTEiJ_G0011209.1 mouse_genomes_project 2 16098238 16098555 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013106.1 MGP_CASTEiJ_G0011269.1 mouse_genomes_project 2 38468227 38470194 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017019.1 MGP_CASTEiJ_G0014728.1 mouse_genomes_project 2 33797100 33806152 - Gm13446 processed_transcript processed_transcript MGP_CASTEiJ_T0017020.1 MGP_CASTEiJ_G0014728.1 mouse_genomes_project 2 33802321 33805935 - Gm13446 processed_transcript processed_transcript MGP_CASTEiJ_T0057856.1 MGP_CASTEiJ_G0025741.1 mouse_genomes_project 2 139680088 139856745 + MGP_CASTEiJ_P0057856 Slx4ip protein_coding protein_coding MGP_CASTEiJ_T0057857.1 MGP_CASTEiJ_G0025741.1 mouse_genomes_project 2 139680371 139789062 + MGP_CASTEiJ_P0057857 Slx4ip protein_coding protein_coding MGP_CASTEiJ_T0057858.1 MGP_CASTEiJ_G0025741.1 mouse_genomes_project 2 139680478 139861320 + Slx4ip protein_coding processed_transcript MGP_CASTEiJ_T0057859.1 MGP_CASTEiJ_G0025741.1 mouse_genomes_project 2 139681038 139855363 + Slx4ip protein_coding processed_transcript MGP_CASTEiJ_T0057860.1 MGP_CASTEiJ_G0025741.1 mouse_genomes_project 2 139681038 139861320 + MGP_CASTEiJ_P0057860 Slx4ip protein_coding protein_coding MGP_CASTEiJ_T0057861.1 MGP_CASTEiJ_G0025741.1 mouse_genomes_project 2 139694663 139856874 + MGP_CASTEiJ_P0057861 Slx4ip protein_coding protein_coding MGP_CASTEiJ_T0003998.1 MGP_CASTEiJ_G0003545.1 mouse_genomes_project 2 155142968 155144621 - Rspo4os antisense antisense MGP_CASTEiJ_T0010075.1 MGP_CASTEiJ_G0008263.1 mouse_genomes_project 2 7746982 7747079 + Gm23542 miRNA miRNA MGP_CASTEiJ_T0054561.1 MGP_CASTEiJ_G0024917.1 mouse_genomes_project 2 47585866 47634979 - MGP_CASTEiJ_P0054561 Orc4 protein_coding protein_coding MGP_CASTEiJ_T0054562.1 MGP_CASTEiJ_G0024917.1 mouse_genomes_project 2 47587922 47592621 - Orc4 protein_coding processed_transcript MGP_CASTEiJ_T0054563.1 MGP_CASTEiJ_G0024917.1 mouse_genomes_project 2 47588358 47634934 - Orc4 protein_coding processed_transcript MGP_CASTEiJ_T0054564.1 MGP_CASTEiJ_G0024917.1 mouse_genomes_project 2 47588421 47593276 - Orc4 protein_coding processed_transcript MGP_CASTEiJ_T0054565.1 MGP_CASTEiJ_G0024917.1 mouse_genomes_project 2 47588456 47595203 - Orc4 protein_coding processed_transcript MGP_CASTEiJ_T0054566.1 MGP_CASTEiJ_G0024917.1 mouse_genomes_project 2 47594016 47634937 - Orc4 protein_coding processed_transcript MGP_CASTEiJ_T0054567.1 MGP_CASTEiJ_G0024917.1 mouse_genomes_project 2 47599830 47635769 - MGP_CASTEiJ_P0054567 Orc4 protein_coding protein_coding MGP_CASTEiJ_T0054568.1 MGP_CASTEiJ_G0024917.1 mouse_genomes_project 2 47614279 47626282 - Orc4 protein_coding processed_transcript MGP_CASTEiJ_T0054569.1 MGP_CASTEiJ_G0024917.1 mouse_genomes_project 2 47616609 47634937 - MGP_CASTEiJ_P0054569 Orc4 protein_coding protein_coding MGP_CASTEiJ_T0054570.1 MGP_CASTEiJ_G0024917.1 mouse_genomes_project 2 47622444 47634935 - Orc4 protein_coding processed_transcript MGP_CASTEiJ_T0054571.1 MGP_CASTEiJ_G0024917.1 mouse_genomes_project 2 47622740 47634944 - MGP_CASTEiJ_P0054571 Orc4 protein_coding protein_coding MGP_CASTEiJ_T0054572.1 MGP_CASTEiJ_G0024917.1 mouse_genomes_project 2 47622811 47636007 - MGP_CASTEiJ_P0054572 Orc4 protein_coding protein_coding MGP_CASTEiJ_T0003922.1 MGP_CASTEiJ_G0003491.1 mouse_genomes_project 2 106867291 106995145 - Pax6os1 antisense antisense MGP_CASTEiJ_T0003923.1 MGP_CASTEiJ_G0003491.1 mouse_genomes_project 2 106868132 106995095 - Pax6os1 antisense antisense MGP_CASTEiJ_T0059613.1 MGP_CASTEiJ_G0026159.1 mouse_genomes_project 2 182829998 182857086 + MGP_CASTEiJ_P0059613 Ss18l1 protein_coding protein_coding MGP_CASTEiJ_T0007047.1 MGP_CASTEiJ_G0005795.1 mouse_genomes_project 2 74122688 74131477 - 4930441J16Rik lincRNA lincRNA MGP_CASTEiJ_T0056268.1 MGP_CASTEiJ_G0025379.1 mouse_genomes_project 2 102985043 102997190 + Commd9 protein_coding processed_transcript MGP_CASTEiJ_T0056269.1 MGP_CASTEiJ_G0025379.1 mouse_genomes_project 2 102985049 103001873 + MGP_CASTEiJ_P0056269 Commd9 protein_coding protein_coding MGP_CASTEiJ_T0056270.1 MGP_CASTEiJ_G0025379.1 mouse_genomes_project 2 102985056 102997456 + Commd9 protein_coding retained_intron MGP_CASTEiJ_T0056271.1 MGP_CASTEiJ_G0025379.1 mouse_genomes_project 2 102985059 102995649 + Commd9 protein_coding retained_intron MGP_CASTEiJ_T0007170.1 MGP_CASTEiJ_G0005894.1 mouse_genomes_project 2 154349399 154547115 + lincRNA lincRNA MGP_CASTEiJ_T0058200.1 MGP_CASTEiJ_G0025831.1 mouse_genomes_project 2 155436875 155442411 + MGP_CASTEiJ_P0058200 Tcf15 protein_coding protein_coding MGP_CASTEiJ_T0053530.1 MGP_CASTEiJ_G0024744.1 mouse_genomes_project 2 27668055 27670247 + MGP_CASTEiJ_P0053530 Cercam protein_coding protein_coding MGP_CASTEiJ_T0053531.1 MGP_CASTEiJ_G0024744.1 mouse_genomes_project 2 27668385 27684405 + MGP_CASTEiJ_P0053531 Cercam protein_coding protein_coding MGP_CASTEiJ_T0053532.1 MGP_CASTEiJ_G0024744.1 mouse_genomes_project 2 27668435 27670201 + MGP_CASTEiJ_P0053532 Cercam protein_coding protein_coding MGP_CASTEiJ_T0053533.1 MGP_CASTEiJ_G0024744.1 mouse_genomes_project 2 27675837 27679998 + Cercam protein_coding retained_intron MGP_CASTEiJ_T0053534.1 MGP_CASTEiJ_G0024744.1 mouse_genomes_project 2 27676381 27682425 + Cercam protein_coding retained_intron MGP_CASTEiJ_T0003847.1 MGP_CASTEiJ_G0003442.1 mouse_genomes_project 2 51256649 51259014 + antisense antisense MGP_CASTEiJ_T0055829.1 MGP_CASTEiJ_G0025303.1 mouse_genomes_project 2 90785873 90795705 + MGP_CASTEiJ_P0055829 Olfr1260 protein_coding protein_coding MGP_CASTEiJ_T0055830.1 MGP_CASTEiJ_G0025303.1 mouse_genomes_project 2 90785880 90795185 + Olfr1260 protein_coding processed_transcript MGP_CASTEiJ_T0055831.1 MGP_CASTEiJ_G0025303.1 mouse_genomes_project 2 90785883 90795135 + MGP_CASTEiJ_P0055831 Olfr1260 protein_coding protein_coding MGP_CASTEiJ_T0055832.1 MGP_CASTEiJ_G0025303.1 mouse_genomes_project 2 90785889 90795192 + Olfr1260 protein_coding processed_transcript MGP_CASTEiJ_T0055833.1 MGP_CASTEiJ_G0025303.1 mouse_genomes_project 2 90794772 90795705 + MGP_CASTEiJ_P0055833 Olfr1260 protein_coding protein_coding MGP_CASTEiJ_T0058526.1 MGP_CASTEiJ_G0025920.1 mouse_genomes_project 2 159345526 159345583 - MGP_CASTEiJ_P0058526 Gm17581 protein_coding protein_coding MGP_CASTEiJ_T0053842.1 MGP_CASTEiJ_G0024784.1 mouse_genomes_project 2 29607937 29623694 + MGP_CASTEiJ_P0053842 Prdm12 protein_coding protein_coding MGP_CASTEiJ_T0098580.1 MGP_CASTEiJ_G0035511.1 mouse_genomes_project 2 123922798 123922912 - Gm23983 rRNA rRNA MGP_CASTEiJ_T0054118.1 MGP_CASTEiJ_G0024825.1 mouse_genomes_project 2 31057115 31067896 - Slc2a8 protein_coding retained_intron MGP_CASTEiJ_T0054119.1 MGP_CASTEiJ_G0024825.1 mouse_genomes_project 2 31057115 31067910 - MGP_CASTEiJ_P0054119 Slc2a8 protein_coding protein_coding MGP_CASTEiJ_T0054120.1 MGP_CASTEiJ_G0024825.1 mouse_genomes_project 2 31057710 31067845 - MGP_CASTEiJ_P0054120 Slc2a8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054121.1 MGP_CASTEiJ_G0024825.1 mouse_genomes_project 2 31057710 31067845 - MGP_CASTEiJ_P0054121 Slc2a8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054122.1 MGP_CASTEiJ_G0024825.1 mouse_genomes_project 2 31057710 31067845 - MGP_CASTEiJ_P0054122 Slc2a8 protein_coding protein_coding MGP_CASTEiJ_T0054123.1 MGP_CASTEiJ_G0024825.1 mouse_genomes_project 2 31060052 31067899 - MGP_CASTEiJ_P0054123 Slc2a8 protein_coding protein_coding MGP_CASTEiJ_T0054124.1 MGP_CASTEiJ_G0024825.1 mouse_genomes_project 2 31061036 31067847 - Slc2a8 protein_coding retained_intron MGP_CASTEiJ_T0054125.1 MGP_CASTEiJ_G0024825.1 mouse_genomes_project 2 31067313 31067911 - Slc2a8 protein_coding processed_transcript MGP_CASTEiJ_T0013223.1 MGP_CASTEiJ_G0011386.1 mouse_genomes_project 2 86127364 86128296 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010155.1 MGP_CASTEiJ_G0008343.1 mouse_genomes_project 2 95343324 95343389 + Mir129b miRNA miRNA MGP_CASTEiJ_T0013342.1 MGP_CASTEiJ_G0011505.1 mouse_genomes_project 2 133468766 133469383 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059359.1 MGP_CASTEiJ_G0026090.1 mouse_genomes_project 2 171885681 171909246 + MGP_CASTEiJ_P0059359 Rnf114 protein_coding protein_coding MGP_CASTEiJ_T0059360.1 MGP_CASTEiJ_G0026090.1 mouse_genomes_project 2 171896166 171909253 + MGP_CASTEiJ_P0059360 Rnf114 protein_coding protein_coding MGP_CASTEiJ_T0059361.1 MGP_CASTEiJ_G0026090.1 mouse_genomes_project 2 171896523 171909244 + MGP_CASTEiJ_P0059361 Rnf114 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006978.1 MGP_CASTEiJ_G0005739.1 mouse_genomes_project 2 25787003 25788486 - Gm13371 lincRNA lincRNA MGP_CASTEiJ_T0006937.1 MGP_CASTEiJ_G0005708.1 mouse_genomes_project 2 910441 913773 - Gm13191 lincRNA lincRNA MGP_CASTEiJ_T0059500.1 MGP_CASTEiJ_G0026129.1 mouse_genomes_project 2 178066170 178092164 - MGP_CASTEiJ_P0059500 Ctcfl protein_coding protein_coding MGP_CASTEiJ_T0001000.1 MGP_CASTEiJ_G0000936.1 mouse_genomes_project 2 10538764 10540482 - TEC TEC MGP_CASTEiJ_T0054237.1 MGP_CASTEiJ_G0024842.1 mouse_genomes_project 2 33145030 33161485 - MGP_CASTEiJ_P0054237 Traf1 protein_coding protein_coding MGP_CASTEiJ_T0054238.1 MGP_CASTEiJ_G0024842.1 mouse_genomes_project 2 33146489 33164896 - MGP_CASTEiJ_P0054238 Traf1 protein_coding protein_coding MGP_CASTEiJ_T0054239.1 MGP_CASTEiJ_G0024842.1 mouse_genomes_project 2 33146491 33165082 - MGP_CASTEiJ_P0054239 Traf1 protein_coding protein_coding MGP_CASTEiJ_T0054240.1 MGP_CASTEiJ_G0024842.1 mouse_genomes_project 2 33150860 33164893 - Traf1 protein_coding processed_transcript MGP_CASTEiJ_T0054241.1 MGP_CASTEiJ_G0024842.1 mouse_genomes_project 2 33159401 33161458 - MGP_CASTEiJ_P0054241 Traf1 protein_coding protein_coding MGP_CASTEiJ_T0054242.1 MGP_CASTEiJ_G0024842.1 mouse_genomes_project 2 33159510 33161483 - Traf1 protein_coding retained_intron MGP_CASTEiJ_T0054243.1 MGP_CASTEiJ_G0024842.1 mouse_genomes_project 2 33159522 33162227 - Traf1 protein_coding processed_transcript MGP_CASTEiJ_T0054244.1 MGP_CASTEiJ_G0024842.1 mouse_genomes_project 2 33160868 33164908 - Traf1 protein_coding retained_intron MGP_CASTEiJ_T0054245.1 MGP_CASTEiJ_G0024842.1 mouse_genomes_project 2 33161473 33164873 - Traf1 protein_coding processed_transcript MGP_CASTEiJ_T0007065.1 MGP_CASTEiJ_G0005809.1 mouse_genomes_project 2 79567153 79578231 + lincRNA lincRNA MGP_CASTEiJ_T0100921.1 MGP_CASTEiJ_G0037834.1 mouse_genomes_project 2 162189374 162189505 - Gm24411 snoRNA snoRNA MGP_CASTEiJ_T0052748.1 MGP_CASTEiJ_G0024600.1 mouse_genomes_project 2 21601466 21712224 - MGP_CASTEiJ_P0052748 Il1f8 protein_coding protein_coding MGP_CASTEiJ_T0053110.1 MGP_CASTEiJ_G0024668.1 mouse_genomes_project 2 23368306 23386114 - MGP_CASTEiJ_P0053110 Glt6d1 protein_coding protein_coding MGP_CASTEiJ_T0053111.1 MGP_CASTEiJ_G0024668.1 mouse_genomes_project 2 23369661 23386097 - Glt6d1 protein_coding processed_transcript MGP_CASTEiJ_T0056694.1 MGP_CASTEiJ_G0025499.1 mouse_genomes_project 2 120401684 120448303 + MGP_CASTEiJ_P0056694 Bub1b protein_coding protein_coding MGP_CASTEiJ_T0056695.1 MGP_CASTEiJ_G0025499.1 mouse_genomes_project 2 120403598 120413254 + Bub1b protein_coding retained_intron MGP_CASTEiJ_T0056696.1 MGP_CASTEiJ_G0025499.1 mouse_genomes_project 2 120433798 120435034 + Bub1b protein_coding retained_intron MGP_CASTEiJ_T0056697.1 MGP_CASTEiJ_G0025499.1 mouse_genomes_project 2 120434741 120443460 + Bub1b protein_coding retained_intron MGP_CASTEiJ_T0007019.1 MGP_CASTEiJ_G0005771.1 mouse_genomes_project 2 51762187 51766958 - Gm26603 lincRNA lincRNA MGP_CASTEiJ_T0001026.1 MGP_CASTEiJ_G0000962.1 mouse_genomes_project 2 36267068 36271873 + TEC TEC MGP_CASTEiJ_T0057476.1 MGP_CASTEiJ_G0025658.1 mouse_genomes_project 2 131297958 131316556 - MGP_CASTEiJ_P0057476 Zc3h8 protein_coding protein_coding MGP_CASTEiJ_T0053535.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27694368 27706246 + MGP_CASTEiJ_P0053535 Odf2 protein_coding protein_coding MGP_CASTEiJ_T0053536.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27694381 27697725 + Odf2 protein_coding retained_intron MGP_CASTEiJ_T0053537.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27694867 27728662 + MGP_CASTEiJ_P0053537 Odf2 protein_coding protein_coding MGP_CASTEiJ_T0053538.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27694932 27728662 + MGP_CASTEiJ_P0053538 Odf2 protein_coding protein_coding MGP_CASTEiJ_T0053539.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27694942 27737992 + MGP_CASTEiJ_P0053539 Odf2 protein_coding protein_coding MGP_CASTEiJ_T0053540.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27694942 27737342 + MGP_CASTEiJ_P0053540 Odf2 protein_coding protein_coding MGP_CASTEiJ_T0053541.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27694945 27737342 + MGP_CASTEiJ_P0053541 Odf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053542.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27694958 27707415 + Odf2 protein_coding processed_transcript MGP_CASTEiJ_T0053543.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27694962 27707385 + MGP_CASTEiJ_P0053543 Odf2 protein_coding protein_coding MGP_CASTEiJ_T0053544.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27694964 27737992 + MGP_CASTEiJ_P0053544 Odf2 protein_coding protein_coding MGP_CASTEiJ_T0053545.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27694965 27728662 + MGP_CASTEiJ_P0053545 Odf2 protein_coding protein_coding MGP_CASTEiJ_T0053546.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27694972 27706632 + Odf2 protein_coding retained_intron MGP_CASTEiJ_T0053547.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27694981 27709211 + MGP_CASTEiJ_P0053547 Odf2 protein_coding protein_coding MGP_CASTEiJ_T0053548.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27695042 27737993 + MGP_CASTEiJ_P0053548 Odf2 protein_coding protein_coding MGP_CASTEiJ_T0053549.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27695210 27728662 + MGP_CASTEiJ_P0053549 Odf2 protein_coding protein_coding MGP_CASTEiJ_T0053550.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27695230 27696138 + Odf2 protein_coding processed_transcript MGP_CASTEiJ_T0053551.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27695290 27728662 + MGP_CASTEiJ_P0053551 Odf2 protein_coding protein_coding MGP_CASTEiJ_T0053552.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27695303 27737342 + MGP_CASTEiJ_P0053552 Odf2 protein_coding protein_coding MGP_CASTEiJ_T0053553.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27695687 27728659 + MGP_CASTEiJ_P0053553 Odf2 protein_coding protein_coding MGP_CASTEiJ_T0053554.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27697143 27706260 + Odf2 protein_coding processed_transcript MGP_CASTEiJ_T0053555.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27708675 27721027 + Odf2 protein_coding processed_transcript MGP_CASTEiJ_T0053556.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27708706 27721468 + Odf2 protein_coding processed_transcript MGP_CASTEiJ_T0053557.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27718801 27721431 + Odf2 protein_coding retained_intron MGP_CASTEiJ_T0053558.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27720547 27725332 + Odf2 protein_coding retained_intron MGP_CASTEiJ_T0053559.1 MGP_CASTEiJ_G0024745.1 mouse_genomes_project 2 27731682 27732957 + Odf2 protein_coding retained_intron MGP_CASTEiJ_T0052363.1 MGP_CASTEiJ_G0024538.1 mouse_genomes_project 2 8418886 8567031 + MGP_CASTEiJ_P0052363 Prkcq protein_coding unknown_likely_coding MGP_CASTEiJ_T0052364.1 MGP_CASTEiJ_G0024538.1 mouse_genomes_project 2 8427078 8567023 + MGP_CASTEiJ_P0052364 Prkcq protein_coding protein_coding MGP_CASTEiJ_T0052365.1 MGP_CASTEiJ_G0024538.1 mouse_genomes_project 2 8427082 8527110 + Prkcq protein_coding retained_intron MGP_CASTEiJ_T0052366.1 MGP_CASTEiJ_G0024538.1 mouse_genomes_project 2 8427280 8550206 + Prkcq protein_coding retained_intron MGP_CASTEiJ_T0052367.1 MGP_CASTEiJ_G0024538.1 mouse_genomes_project 2 8485158 8565922 + MGP_CASTEiJ_P0052367 Prkcq protein_coding protein_coding MGP_CASTEiJ_T0052368.1 MGP_CASTEiJ_G0024538.1 mouse_genomes_project 2 8509381 8515941 + Prkcq protein_coding retained_intron MGP_CASTEiJ_T0052369.1 MGP_CASTEiJ_G0024538.1 mouse_genomes_project 2 8513007 8566500 + Prkcq protein_coding processed_transcript MGP_CASTEiJ_T0013426.1 MGP_CASTEiJ_G0011589.1 mouse_genomes_project 2 163669308 163669840 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052831.1 MGP_CASTEiJ_G0024614.1 mouse_genomes_project 2 22498759 22582121 + MGP_CASTEiJ_P0052831 Pnpla7 protein_coding protein_coding MGP_CASTEiJ_T0052832.1 MGP_CASTEiJ_G0024614.1 mouse_genomes_project 2 22498799 22582121 + MGP_CASTEiJ_P0052832 Pnpla7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052833.1 MGP_CASTEiJ_G0024614.1 mouse_genomes_project 2 22498814 22506060 + MGP_CASTEiJ_P0052833 Pnpla7 protein_coding protein_coding MGP_CASTEiJ_T0052834.1 MGP_CASTEiJ_G0024614.1 mouse_genomes_project 2 22498815 22518256 + MGP_CASTEiJ_P0052834 Pnpla7 protein_coding protein_coding MGP_CASTEiJ_T0052835.1 MGP_CASTEiJ_G0024614.1 mouse_genomes_project 2 22498827 22504128 + Pnpla7 protein_coding processed_transcript MGP_CASTEiJ_T0052836.1 MGP_CASTEiJ_G0024614.1 mouse_genomes_project 2 22498874 22563943 + Pnpla7 protein_coding retained_intron MGP_CASTEiJ_T0052837.1 MGP_CASTEiJ_G0024614.1 mouse_genomes_project 2 22501063 22582131 + MGP_CASTEiJ_P0052837 Pnpla7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052838.1 MGP_CASTEiJ_G0024614.1 mouse_genomes_project 2 22506140 22511421 + Pnpla7 protein_coding processed_transcript MGP_CASTEiJ_T0052839.1 MGP_CASTEiJ_G0024614.1 mouse_genomes_project 2 22518610 22521617 + Pnpla7 protein_coding retained_intron MGP_CASTEiJ_T0052840.1 MGP_CASTEiJ_G0024614.1 mouse_genomes_project 2 22519090 22533664 + MGP_CASTEiJ_P0052840 Pnpla7 protein_coding protein_coding MGP_CASTEiJ_T0052841.1 MGP_CASTEiJ_G0024614.1 mouse_genomes_project 2 22564092 22582121 + Pnpla7 protein_coding retained_intron MGP_CASTEiJ_T0052842.1 MGP_CASTEiJ_G0024614.1 mouse_genomes_project 2 22579456 22580154 + Pnpla7 protein_coding retained_intron MGP_CASTEiJ_T0052843.1 MGP_CASTEiJ_G0024614.1 mouse_genomes_project 2 22579770 22581832 + MGP_CASTEiJ_P0052843 Pnpla7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052844.1 MGP_CASTEiJ_G0024614.1 mouse_genomes_project 2 22579825 22580400 + Pnpla7 protein_coding retained_intron MGP_CASTEiJ_T0052845.1 MGP_CASTEiJ_G0024614.1 mouse_genomes_project 2 22579993 22580915 + Pnpla7 protein_coding retained_intron MGP_CASTEiJ_T0052846.1 MGP_CASTEiJ_G0024614.1 mouse_genomes_project 2 22581217 22581919 + Pnpla7 protein_coding retained_intron MGP_CASTEiJ_T0102254.1 MGP_CASTEiJ_G0038979.1 mouse_genomes_project 2 156585303 156585971 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0055566.1 MGP_CASTEiJ_G0025104.1 mouse_genomes_project 2 85111970 85116564 + MGP_CASTEiJ_P0055566 Timm10 protein_coding protein_coding MGP_CASTEiJ_T0055567.1 MGP_CASTEiJ_G0025104.1 mouse_genomes_project 2 85112357 85116464 + MGP_CASTEiJ_P0055567 Timm10 protein_coding protein_coding MGP_CASTEiJ_T0052218.1 MGP_CASTEiJ_G0024511.1 mouse_genomes_project 2 1722008 1810899 + MGP_CASTEiJ_P0052218 Bend7 protein_coding protein_coding MGP_CASTEiJ_T0052219.1 MGP_CASTEiJ_G0024511.1 mouse_genomes_project 2 1722011 1796853 + MGP_CASTEiJ_P0052219 Bend7 protein_coding protein_coding MGP_CASTEiJ_T0052220.1 MGP_CASTEiJ_G0024511.1 mouse_genomes_project 2 1722325 1811261 + MGP_CASTEiJ_P0052220 Bend7 protein_coding protein_coding MGP_CASTEiJ_T0052221.1 MGP_CASTEiJ_G0024511.1 mouse_genomes_project 2 1756860 1812479 + Bend7 protein_coding processed_transcript MGP_CASTEiJ_T0059011.1 MGP_CASTEiJ_G0026007.1 mouse_genomes_project 2 167822613 167846604 - MGP_CASTEiJ_P0059011 Ada protein_coding unknown_likely_coding MGP_CASTEiJ_T0059012.1 MGP_CASTEiJ_G0026007.1 mouse_genomes_project 2 167825813 167826659 - Ada protein_coding processed_transcript MGP_CASTEiJ_T0052736.1 MGP_CASTEiJ_G0024595.1 mouse_genomes_project 2 20661376 20728728 + MGP_CASTEiJ_P0052736 4931423N10Rik protein_coding protein_coding MGP_CASTEiJ_T0052737.1 MGP_CASTEiJ_G0024595.1 mouse_genomes_project 2 20661397 20726523 + MGP_CASTEiJ_P0052737 4931423N10Rik protein_coding protein_coding MGP_CASTEiJ_T0010115.1 MGP_CASTEiJ_G0008303.1 mouse_genomes_project 2 29580444 29580508 + Mir6998 miRNA miRNA MGP_CASTEiJ_T0013385.1 MGP_CASTEiJ_G0011548.1 mouse_genomes_project 2 150834872 150835202 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056506.1 MGP_CASTEiJ_G0025426.1 mouse_genomes_project 2 111363805 111374823 + MGP_CASTEiJ_P0056506 Lin7c protein_coding protein_coding MGP_CASTEiJ_T0056507.1 MGP_CASTEiJ_G0025426.1 mouse_genomes_project 2 111363822 111370553 + Lin7c protein_coding retained_intron MGP_CASTEiJ_T0101756.1 MGP_CASTEiJ_G0038553.1 mouse_genomes_project 2 88700743 88835661 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0059104.1 MGP_CASTEiJ_G0026046.1 mouse_genomes_project 2 168915836 168940116 + MGP_CASTEiJ_P0059104 Dnttip1 protein_coding protein_coding MGP_CASTEiJ_T0059105.1 MGP_CASTEiJ_G0026046.1 mouse_genomes_project 2 168915867 168921391 + MGP_CASTEiJ_P0059105 Dnttip1 protein_coding protein_coding MGP_CASTEiJ_T0059106.1 MGP_CASTEiJ_G0026046.1 mouse_genomes_project 2 168915884 168931522 + MGP_CASTEiJ_P0059106 Dnttip1 protein_coding protein_coding MGP_CASTEiJ_T0059107.1 MGP_CASTEiJ_G0026046.1 mouse_genomes_project 2 168924127 168929523 + Dnttip1 protein_coding retained_intron MGP_CASTEiJ_T0052630.1 MGP_CASTEiJ_G0024578.1 mouse_genomes_project 2 16827761 16840712 + Msrb2 protein_coding processed_transcript MGP_CASTEiJ_T0052631.1 MGP_CASTEiJ_G0024578.1 mouse_genomes_project 2 16827957 16853059 + MGP_CASTEiJ_P0052631 Msrb2 protein_coding protein_coding MGP_CASTEiJ_T0052632.1 MGP_CASTEiJ_G0024578.1 mouse_genomes_project 2 16827989 16851409 + Msrb2 protein_coding processed_transcript MGP_CASTEiJ_T0052633.1 MGP_CASTEiJ_G0024578.1 mouse_genomes_project 2 16828162 16852351 + Msrb2 protein_coding processed_transcript MGP_CASTEiJ_T0017014.1 MGP_CASTEiJ_G0014725.1 mouse_genomes_project 2 29085572 29091924 - D330023K18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017015.1 MGP_CASTEiJ_G0014725.1 mouse_genomes_project 2 29090273 29091924 - D330023K18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017063.1 MGP_CASTEiJ_G0014758.1 mouse_genomes_project 2 93385356 93409288 + D930015M05Rik processed_transcript processed_transcript MGP_CASTEiJ_T0058563.1 MGP_CASTEiJ_G0025929.1 mouse_genomes_project 2 159593497 159626142 + Cep250 protein_coding retained_intron MGP_CASTEiJ_T0058564.1 MGP_CASTEiJ_G0025929.1 mouse_genomes_project 2 159593597 159638442 + MGP_CASTEiJ_P0058564 Cep250 protein_coding protein_coding MGP_CASTEiJ_T0058565.1 MGP_CASTEiJ_G0025929.1 mouse_genomes_project 2 159593597 159638442 + MGP_CASTEiJ_P0058565 Cep250 protein_coding protein_coding MGP_CASTEiJ_T0058566.1 MGP_CASTEiJ_G0025929.1 mouse_genomes_project 2 159593597 159638442 + MGP_CASTEiJ_P0058566 Cep250 protein_coding protein_coding MGP_CASTEiJ_T0058567.1 MGP_CASTEiJ_G0025929.1 mouse_genomes_project 2 159593611 159612539 + MGP_CASTEiJ_P0058567 Cep250 protein_coding protein_coding MGP_CASTEiJ_T0058568.1 MGP_CASTEiJ_G0025929.1 mouse_genomes_project 2 159593633 159606091 + MGP_CASTEiJ_P0058568 Cep250 protein_coding protein_coding MGP_CASTEiJ_T0058569.1 MGP_CASTEiJ_G0025929.1 mouse_genomes_project 2 159593686 159638446 + MGP_CASTEiJ_P0058569 Cep250 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058571.1 MGP_CASTEiJ_G0025929.1 mouse_genomes_project 2 159614501 159638442 + Cep250 protein_coding retained_intron MGP_CASTEiJ_T0058572.1 MGP_CASTEiJ_G0025929.1 mouse_genomes_project 2 159619092 159620987 + Cep250 protein_coding retained_intron MGP_CASTEiJ_T0058573.1 MGP_CASTEiJ_G0025929.1 mouse_genomes_project 2 159625411 159629131 + MGP_CASTEiJ_P0058573 Cep250 protein_coding protein_coding MGP_CASTEiJ_T0058574.1 MGP_CASTEiJ_G0025929.1 mouse_genomes_project 2 159625443 159630125 + MGP_CASTEiJ_P0058574 Cep250 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054377.1 MGP_CASTEiJ_G0024887.1 mouse_genomes_project 2 35524499 35525483 + MGP_CASTEiJ_P0054377 Olfr368 protein_coding protein_coding MGP_CASTEiJ_T0052687.1 MGP_CASTEiJ_G0024587.1 mouse_genomes_project 2 19755176 20035162 + MGP_CASTEiJ_P0052687 Myo3a protein_coding protein_coding MGP_CASTEiJ_T0052688.1 MGP_CASTEiJ_G0024587.1 mouse_genomes_project 2 19755178 19821057 + Myo3a protein_coding processed_transcript MGP_CASTEiJ_T0052689.1 MGP_CASTEiJ_G0024587.1 mouse_genomes_project 2 19755178 19831345 + Myo3a protein_coding processed_transcript MGP_CASTEiJ_T0052690.1 MGP_CASTEiJ_G0024587.1 mouse_genomes_project 2 19770260 19920109 + MGP_CASTEiJ_P0052690 Myo3a protein_coding protein_coding MGP_CASTEiJ_T0052691.1 MGP_CASTEiJ_G0024587.1 mouse_genomes_project 2 19962153 20035157 + MGP_CASTEiJ_P0052691 Myo3a protein_coding protein_coding MGP_CASTEiJ_T0052692.1 MGP_CASTEiJ_G0024587.1 mouse_genomes_project 2 19989806 20011080 + Myo3a protein_coding processed_transcript MGP_CASTEiJ_T0013328.1 MGP_CASTEiJ_G0011491.1 mouse_genomes_project 2 129121318 129122163 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054357.1 MGP_CASTEiJ_G0024869.1 mouse_genomes_project 2 34974412 34978170 + MGP_CASTEiJ_P0054357 Olfr348 protein_coding protein_coding MGP_CASTEiJ_T0054358.1 MGP_CASTEiJ_G0024869.1 mouse_genomes_project 2 34977228 34978170 + MGP_CASTEiJ_P0054358 Olfr348 protein_coding protein_coding MGP_CASTEiJ_T0099628.1 MGP_CASTEiJ_G0036541.1 mouse_genomes_project 2 27737673 27737770 - Gm23865 snRNA snRNA MGP_CASTEiJ_T0058060.1 MGP_CASTEiJ_G0025786.1 mouse_genomes_project 2 151645368 151646792 + MGP_CASTEiJ_P0058060 Sstr4 protein_coding protein_coding MGP_CASTEiJ_T0013322.1 MGP_CASTEiJ_G0011485.1 mouse_genomes_project 2 123370087 123370320 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059167.1 MGP_CASTEiJ_G0026060.1 mouse_genomes_project 2 169144503 169146471 + MGP_CASTEiJ_P0059167 Slc12a5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059168.1 MGP_CASTEiJ_G0026060.1 mouse_genomes_project 2 169144517 169158150 + Slc12a5 protein_coding processed_transcript MGP_CASTEiJ_T0059169.1 MGP_CASTEiJ_G0026060.1 mouse_genomes_project 2 169144525 169185914 + MGP_CASTEiJ_P0059169 Slc12a5 protein_coding protein_coding MGP_CASTEiJ_T0059170.1 MGP_CASTEiJ_G0026060.1 mouse_genomes_project 2 169144547 169188061 + MGP_CASTEiJ_P0059170 Slc12a5 protein_coding protein_coding MGP_CASTEiJ_T0059171.1 MGP_CASTEiJ_G0026060.1 mouse_genomes_project 2 169151637 169188070 + MGP_CASTEiJ_P0059171 Slc12a5 protein_coding protein_coding MGP_CASTEiJ_T0059172.1 MGP_CASTEiJ_G0026060.1 mouse_genomes_project 2 169151892 169188066 + MGP_CASTEiJ_P0059172 Slc12a5 protein_coding protein_coding MGP_CASTEiJ_T0059173.1 MGP_CASTEiJ_G0026060.1 mouse_genomes_project 2 169151934 169176636 + MGP_CASTEiJ_P0059173 Slc12a5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059174.1 MGP_CASTEiJ_G0026060.1 mouse_genomes_project 2 169152016 169185739 + MGP_CASTEiJ_P0059174 Slc12a5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059175.1 MGP_CASTEiJ_G0026060.1 mouse_genomes_project 2 169168653 169173008 + Slc12a5 protein_coding retained_intron MGP_CASTEiJ_T0059176.1 MGP_CASTEiJ_G0026060.1 mouse_genomes_project 2 169184935 169188061 + Slc12a5 protein_coding retained_intron MGP_CASTEiJ_T0100866.1 MGP_CASTEiJ_G0037779.1 mouse_genomes_project 2 31046975 31047105 + Snora65 snoRNA snoRNA MGP_CASTEiJ_T0099676.1 MGP_CASTEiJ_G0036589.1 mouse_genomes_project 2 184041619 184041723 + Gm24892 snRNA snRNA MGP_CASTEiJ_T0058988.1 MGP_CASTEiJ_G0026003.1 mouse_genomes_project 2 167587165 167631012 + MGP_CASTEiJ_P0058988 Hnf4a protein_coding protein_coding MGP_CASTEiJ_T0058989.1 MGP_CASTEiJ_G0026003.1 mouse_genomes_project 2 167625240 167638912 + Hnf4a protein_coding processed_transcript MGP_CASTEiJ_T0058990.1 MGP_CASTEiJ_G0026003.1 mouse_genomes_project 2 167625609 167653303 + MGP_CASTEiJ_P0058990 Hnf4a protein_coding protein_coding MGP_CASTEiJ_T0058991.1 MGP_CASTEiJ_G0026003.1 mouse_genomes_project 2 167625610 167653298 + MGP_CASTEiJ_P0058991 Hnf4a protein_coding protein_coding MGP_CASTEiJ_T0058992.1 MGP_CASTEiJ_G0026003.1 mouse_genomes_project 2 167628497 167638911 + MGP_CASTEiJ_P0058992 Hnf4a protein_coding protein_coding MGP_CASTEiJ_T0052829.1 MGP_CASTEiJ_G0024613.1 mouse_genomes_project 2 22496819 22497822 - MGP_CASTEiJ_P0052829 Mrpl41 protein_coding protein_coding MGP_CASTEiJ_T0052830.1 MGP_CASTEiJ_G0024613.1 mouse_genomes_project 2 22497199 22497713 - MGP_CASTEiJ_P0052830 Mrpl41 protein_coding protein_coding MGP_CASTEiJ_T0013157.1 MGP_CASTEiJ_G0011320.1 mouse_genomes_project 2 59593307 59594457 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055272.1 MGP_CASTEiJ_G0025040.1 mouse_genomes_project 2 74482230 74490465 - MGP_CASTEiJ_P0055272 Evx2 protein_coding protein_coding MGP_CASTEiJ_T0055273.1 MGP_CASTEiJ_G0025040.1 mouse_genomes_project 2 74486532 74490327 - MGP_CASTEiJ_P0055273 Evx2 protein_coding protein_coding MGP_CASTEiJ_T0017129.1 MGP_CASTEiJ_G0014787.1 mouse_genomes_project 2 133798390 133799689 + Gm14233 processed_transcript processed_transcript MGP_CASTEiJ_T0013196.1 MGP_CASTEiJ_G0011359.1 mouse_genomes_project 2 77320609 77321215 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052893.1 MGP_CASTEiJ_G0024622.1 mouse_genomes_project 2 22751038 22754536 + MGP_CASTEiJ_P0052893 Fam166a protein_coding protein_coding MGP_CASTEiJ_T0052894.1 MGP_CASTEiJ_G0024622.1 mouse_genomes_project 2 22753648 22754536 + Fam166a protein_coding processed_transcript MGP_CASTEiJ_T0011162.1 MGP_CASTEiJ_G0009350.1 mouse_genomes_project 2 22082439 22082764 + Gm25455 misc_RNA misc_RNA MGP_CASTEiJ_T0004000.1 MGP_CASTEiJ_G0003547.1 mouse_genomes_project 2 155359065 155361019 - AA387200 antisense antisense MGP_CASTEiJ_T0057021.1 MGP_CASTEiJ_G0025562.1 mouse_genomes_project 2 123044201 123060035 - MGP_CASTEiJ_P0057021 Tgm7 protein_coding protein_coding MGP_CASTEiJ_T0056768.1 MGP_CASTEiJ_G0025517.1 mouse_genomes_project 2 120996673 120999755 + MGP_CASTEiJ_P0056768 Gm14137 protein_coding protein_coding MGP_CASTEiJ_T0059034.1 MGP_CASTEiJ_G0026015.1 mouse_genomes_project 2 168287303 168294826 - MGP_CASTEiJ_P0059034 Kcns1 protein_coding protein_coding MGP_CASTEiJ_T0057369.1 MGP_CASTEiJ_G0025631.1 mouse_genomes_project 2 129469032 129491751 - MGP_CASTEiJ_P0057369 1810024B03Rik protein_coding protein_coding MGP_CASTEiJ_T0057370.1 MGP_CASTEiJ_G0025631.1 mouse_genomes_project 2 129486305 129491725 - 1810024B03Rik protein_coding processed_transcript MGP_CASTEiJ_T0013128.1 MGP_CASTEiJ_G0011291.1 mouse_genomes_project 2 50022509 50023332 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013152.1 MGP_CASTEiJ_G0011315.1 mouse_genomes_project 2 58065143 58065669 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007195.1 MGP_CASTEiJ_G0005914.1 mouse_genomes_project 2 165319525 165320667 + Gm14241 lincRNA lincRNA MGP_CASTEiJ_T0053890.1 MGP_CASTEiJ_G0024793.1 mouse_genomes_project 2 30095012 30112198 + MGP_CASTEiJ_P0053890 Plpp7 protein_coding protein_coding MGP_CASTEiJ_T0053891.1 MGP_CASTEiJ_G0024793.1 mouse_genomes_project 2 30095049 30111504 + MGP_CASTEiJ_P0053891 Plpp7 protein_coding protein_coding MGP_CASTEiJ_T0053892.1 MGP_CASTEiJ_G0024793.1 mouse_genomes_project 2 30095639 30112186 + MGP_CASTEiJ_P0053892 Plpp7 protein_coding protein_coding MGP_CASTEiJ_T0057111.1 MGP_CASTEiJ_G0025573.1 mouse_genomes_project 2 123380469 123408778 + MGP_CASTEiJ_P0057111 Pdia3 protein_coding protein_coding MGP_CASTEiJ_T0057112.1 MGP_CASTEiJ_G0025573.1 mouse_genomes_project 2 123380577 123391775 + Pdia3 protein_coding processed_transcript MGP_CASTEiJ_T0057113.1 MGP_CASTEiJ_G0025573.1 mouse_genomes_project 2 123380802 123403631 + MGP_CASTEiJ_P0057113 Pdia3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057114.1 MGP_CASTEiJ_G0025573.1 mouse_genomes_project 2 123391803 123402078 + Pdia3 protein_coding retained_intron MGP_CASTEiJ_T0007115.1 MGP_CASTEiJ_G0005850.1 mouse_genomes_project 2 117746189 117769657 + G630016G05Rik lincRNA lincRNA MGP_CASTEiJ_T0007116.1 MGP_CASTEiJ_G0005850.1 mouse_genomes_project 2 117750445 117769656 + G630016G05Rik lincRNA lincRNA MGP_CASTEiJ_T0100917.1 MGP_CASTEiJ_G0037830.1 mouse_genomes_project 2 154097832 154097976 + Gm23598 snoRNA snoRNA MGP_CASTEiJ_T0053039.1 MGP_CASTEiJ_G0024648.1 mouse_genomes_project 2 23049703 23052777 - MGP_CASTEiJ_P0053039 C8g protein_coding protein_coding MGP_CASTEiJ_T0053040.1 MGP_CASTEiJ_G0024648.1 mouse_genomes_project 2 23049703 23051666 - MGP_CASTEiJ_P0053040 C8g protein_coding protein_coding MGP_CASTEiJ_T0053041.1 MGP_CASTEiJ_G0024648.1 mouse_genomes_project 2 23049708 23050555 - C8g protein_coding processed_transcript MGP_CASTEiJ_T0053042.1 MGP_CASTEiJ_G0024648.1 mouse_genomes_project 2 23049708 23051308 - C8g protein_coding processed_transcript MGP_CASTEiJ_T0053043.1 MGP_CASTEiJ_G0024648.1 mouse_genomes_project 2 23049708 23051288 - C8g protein_coding processed_transcript MGP_CASTEiJ_T0053044.1 MGP_CASTEiJ_G0024648.1 mouse_genomes_project 2 23049710 23051296 - C8g protein_coding processed_transcript MGP_CASTEiJ_T0053045.1 MGP_CASTEiJ_G0024648.1 mouse_genomes_project 2 23049949 23051167 - C8g protein_coding processed_transcript MGP_CASTEiJ_T0007137.1 MGP_CASTEiJ_G0005867.1 mouse_genomes_project 2 130559268 130561246 - Gm14012 lincRNA lincRNA MGP_CASTEiJ_T0099672.1 MGP_CASTEiJ_G0036585.1 mouse_genomes_project 2 167594821 167594924 + Gm25881 snRNA snRNA MGP_CASTEiJ_T0007177.1 MGP_CASTEiJ_G0005899.1 mouse_genomes_project 2 156028348 156030308 - Gm26841 lincRNA lincRNA MGP_CASTEiJ_T0013340.1 MGP_CASTEiJ_G0011503.1 mouse_genomes_project 2 133356035 133357316 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052746.1 MGP_CASTEiJ_G0024599.1 mouse_genomes_project 2 21527531 21552964 - MGP_CASTEiJ_P0052746 Tbpl2 protein_coding protein_coding MGP_CASTEiJ_T0052747.1 MGP_CASTEiJ_G0024599.1 mouse_genomes_project 2 21527725 21552901 - MGP_CASTEiJ_P0052747 Tbpl2 protein_coding protein_coding MGP_CASTEiJ_T0056584.1 MGP_CASTEiJ_G0025475.1 mouse_genomes_project 2 113992990 114139142 + MGP_CASTEiJ_P0056584 Aven protein_coding protein_coding MGP_CASTEiJ_T0056585.1 MGP_CASTEiJ_G0025475.1 mouse_genomes_project 2 114061264 114134636 + Aven protein_coding processed_transcript MGP_CASTEiJ_T0056586.1 MGP_CASTEiJ_G0025475.1 mouse_genomes_project 2 114061616 114135471 + MGP_CASTEiJ_P0056586 Aven protein_coding protein_coding MGP_CASTEiJ_T0003897.1 MGP_CASTEiJ_G0003476.1 mouse_genomes_project 2 75014046 75197049 + 2600014E21Rik antisense antisense MGP_CASTEiJ_T0055652.1 MGP_CASTEiJ_G0025154.1 mouse_genomes_project 2 86706536 86707550 - MGP_CASTEiJ_P0055652 Olfr1051 protein_coding protein_coding MGP_CASTEiJ_T0055793.1 MGP_CASTEiJ_G0025278.1 mouse_genomes_project 2 90130729 90131665 - MGP_CASTEiJ_P0055793 Olfr1232 protein_coding protein_coding MGP_CASTEiJ_T0052469.1 MGP_CASTEiJ_G0024548.1 mouse_genomes_project 2 10215666 10289359 + MGP_CASTEiJ_P0052469 Pter protein_coding protein_coding MGP_CASTEiJ_T0052470.1 MGP_CASTEiJ_G0024548.1 mouse_genomes_project 2 10215687 10262932 + Pter protein_coding processed_transcript MGP_CASTEiJ_T0052471.1 MGP_CASTEiJ_G0024548.1 mouse_genomes_project 2 10215694 10289360 + MGP_CASTEiJ_P0052471 Pter protein_coding protein_coding MGP_CASTEiJ_T0052472.1 MGP_CASTEiJ_G0024548.1 mouse_genomes_project 2 10215717 10291833 + MGP_CASTEiJ_P0052472 Pter protein_coding protein_coding MGP_CASTEiJ_T0052473.1 MGP_CASTEiJ_G0024548.1 mouse_genomes_project 2 10215725 10289993 + MGP_CASTEiJ_P0052473 Pter protein_coding protein_coding MGP_CASTEiJ_T0052474.1 MGP_CASTEiJ_G0024548.1 mouse_genomes_project 2 10215726 10264352 + Pter protein_coding processed_transcript MGP_CASTEiJ_T0052475.1 MGP_CASTEiJ_G0024548.1 mouse_genomes_project 2 10260355 10290237 + Pter protein_coding retained_intron MGP_CASTEiJ_T0007217.1 MGP_CASTEiJ_G0005932.1 mouse_genomes_project 2 172201633 172204269 + lincRNA lincRNA MGP_CASTEiJ_T0058304.1 MGP_CASTEiJ_G0025867.1 mouse_genomes_project 2 156516546 156563421 + Tm9sf4 protein_coding processed_transcript MGP_CASTEiJ_T0058305.1 MGP_CASTEiJ_G0025867.1 mouse_genomes_project 2 156516546 156571337 + MGP_CASTEiJ_P0058305 Tm9sf4 protein_coding protein_coding MGP_CASTEiJ_T0058306.1 MGP_CASTEiJ_G0025867.1 mouse_genomes_project 2 156516784 156543673 + Tm9sf4 protein_coding processed_transcript MGP_CASTEiJ_T0058307.1 MGP_CASTEiJ_G0025867.1 mouse_genomes_project 2 156516791 156548157 + Tm9sf4 protein_coding retained_intron MGP_CASTEiJ_T0058308.1 MGP_CASTEiJ_G0025867.1 mouse_genomes_project 2 156545024 156546813 + Tm9sf4 protein_coding retained_intron MGP_CASTEiJ_T0058309.1 MGP_CASTEiJ_G0025867.1 mouse_genomes_project 2 156545551 156559805 + Tm9sf4 protein_coding processed_transcript MGP_CASTEiJ_T0058310.1 MGP_CASTEiJ_G0025867.1 mouse_genomes_project 2 156551069 156562461 + Tm9sf4 protein_coding processed_transcript MGP_CASTEiJ_T0058311.1 MGP_CASTEiJ_G0025867.1 mouse_genomes_project 2 156552256 156557976 + Tm9sf4 protein_coding processed_transcript MGP_CASTEiJ_T0058312.1 MGP_CASTEiJ_G0025867.1 mouse_genomes_project 2 156559308 156571337 + Tm9sf4 protein_coding retained_intron MGP_CASTEiJ_T0058313.1 MGP_CASTEiJ_G0025867.1 mouse_genomes_project 2 156560681 156571337 + Tm9sf4 protein_coding retained_intron MGP_CASTEiJ_T0057393.1 MGP_CASTEiJ_G0025637.1 mouse_genomes_project 2 129627962 129646994 + MGP_CASTEiJ_P0057393 Astl protein_coding protein_coding MGP_CASTEiJ_T0057394.1 MGP_CASTEiJ_G0025637.1 mouse_genomes_project 2 129630951 129646993 + MGP_CASTEiJ_P0057394 Astl protein_coding protein_coding MGP_CASTEiJ_T0057395.1 MGP_CASTEiJ_G0025637.1 mouse_genomes_project 2 129630965 129646992 + MGP_CASTEiJ_P0057395 Astl protein_coding protein_coding MGP_CASTEiJ_T0057396.1 MGP_CASTEiJ_G0025637.1 mouse_genomes_project 2 129631237 129639505 + MGP_CASTEiJ_P0057396 Astl protein_coding protein_coding MGP_CASTEiJ_T0007156.1 MGP_CASTEiJ_G0005883.1 mouse_genomes_project 2 141413776 141478142 + Gm14061 lincRNA lincRNA MGP_CASTEiJ_T0010142.1 MGP_CASTEiJ_G0008330.1 mouse_genomes_project 2 76412637 76412743 + Gm23164 miRNA miRNA MGP_CASTEiJ_T0052186.1 MGP_CASTEiJ_G0024508.1 mouse_genomes_project 2 591999 767989 + MGP_CASTEiJ_P0052186 Fam107b protein_coding protein_coding MGP_CASTEiJ_T0052187.1 MGP_CASTEiJ_G0024508.1 mouse_genomes_project 2 702705 770337 + MGP_CASTEiJ_P0052187 Fam107b protein_coding protein_coding MGP_CASTEiJ_T0052188.1 MGP_CASTEiJ_G0024508.1 mouse_genomes_project 2 702725 768123 + MGP_CASTEiJ_P0052188 Fam107b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052189.1 MGP_CASTEiJ_G0024508.1 mouse_genomes_project 2 758959 761222 + MGP_CASTEiJ_P0052189 Fam107b protein_coding protein_coding MGP_CASTEiJ_T0052190.1 MGP_CASTEiJ_G0024508.1 mouse_genomes_project 2 758985 770335 + MGP_CASTEiJ_P0052190 Fam107b protein_coding protein_coding MGP_CASTEiJ_T0052191.1 MGP_CASTEiJ_G0024508.1 mouse_genomes_project 2 762217 767827 + MGP_CASTEiJ_P0052191 Fam107b protein_coding protein_coding MGP_CASTEiJ_T0100930.1 MGP_CASTEiJ_G0037843.1 mouse_genomes_project 2 169480577 169480708 - Gm25569 snoRNA snoRNA MGP_CASTEiJ_T0058837.1 MGP_CASTEiJ_G0025970.1 mouse_genomes_project 2 162076921 162107708 + MGP_CASTEiJ_P0058837 Bpi protein_coding protein_coding MGP_CASTEiJ_T0058838.1 MGP_CASTEiJ_G0025970.1 mouse_genomes_project 2 162076921 162107569 + MGP_CASTEiJ_P0058838 Bpi protein_coding protein_coding MGP_CASTEiJ_T0058839.1 MGP_CASTEiJ_G0025970.1 mouse_genomes_project 2 162076921 162107705 + MGP_CASTEiJ_P0058839 Bpi protein_coding protein_coding MGP_CASTEiJ_T0000987.1 MGP_CASTEiJ_G0000923.1 mouse_genomes_project 2 8485586 8488290 + TEC TEC MGP_CASTEiJ_T0003992.1 MGP_CASTEiJ_G0003540.1 mouse_genomes_project 2 150360123 150522486 + antisense antisense MGP_CASTEiJ_T0059899.1 MGP_CASTEiJ_G0026211.1 mouse_genomes_project 2 184614426 184620388 + MGP_CASTEiJ_P0059899 Oprl1 protein_coding protein_coding MGP_CASTEiJ_T0059900.1 MGP_CASTEiJ_G0026211.1 mouse_genomes_project 2 184614452 184620378 + MGP_CASTEiJ_P0059900 Oprl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059901.1 MGP_CASTEiJ_G0026211.1 mouse_genomes_project 2 184614456 184617990 + MGP_CASTEiJ_P0059901 Oprl1 protein_coding protein_coding MGP_CASTEiJ_T0059902.1 MGP_CASTEiJ_G0026211.1 mouse_genomes_project 2 184614477 184620377 + MGP_CASTEiJ_P0059902 Oprl1 protein_coding protein_coding MGP_CASTEiJ_T0059903.1 MGP_CASTEiJ_G0026211.1 mouse_genomes_project 2 184614493 184620375 + MGP_CASTEiJ_P0059903 Oprl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059904.1 MGP_CASTEiJ_G0026211.1 mouse_genomes_project 2 184614504 184620377 + Oprl1 protein_coding processed_transcript MGP_CASTEiJ_T0059905.1 MGP_CASTEiJ_G0026211.1 mouse_genomes_project 2 184614511 184615789 + Oprl1 protein_coding processed_transcript MGP_CASTEiJ_T0059906.1 MGP_CASTEiJ_G0026211.1 mouse_genomes_project 2 184614758 184620375 + MGP_CASTEiJ_P0059906 Oprl1 protein_coding protein_coding MGP_CASTEiJ_T0059907.1 MGP_CASTEiJ_G0026211.1 mouse_genomes_project 2 184615003 184618751 + MGP_CASTEiJ_P0059907 Oprl1 protein_coding protein_coding MGP_CASTEiJ_T0059908.1 MGP_CASTEiJ_G0026211.1 mouse_genomes_project 2 184615112 184618772 + MGP_CASTEiJ_P0059908 Oprl1 protein_coding protein_coding MGP_CASTEiJ_T0059909.1 MGP_CASTEiJ_G0026211.1 mouse_genomes_project 2 184615113 184618772 + MGP_CASTEiJ_P0059909 Oprl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0017000.1 MGP_CASTEiJ_G0014716.1 mouse_genomes_project 2 24062516 24078143 + 0610009E02Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017001.1 MGP_CASTEiJ_G0014716.1 mouse_genomes_project 2 24062744 24076759 + 0610009E02Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017002.1 MGP_CASTEiJ_G0014716.1 mouse_genomes_project 2 24062762 24078154 + 0610009E02Rik processed_transcript processed_transcript MGP_CASTEiJ_T0013062.1 MGP_CASTEiJ_G0011225.1 mouse_genomes_project 2 21680663 21682146 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007239.1 MGP_CASTEiJ_G0005952.1 mouse_genomes_project 2 176035002 176041445 + 1700007M16Rik lincRNA lincRNA MGP_CASTEiJ_T0003868.1 MGP_CASTEiJ_G0003459.1 mouse_genomes_project 2 68651908 68676233 + Gm13613 antisense antisense MGP_CASTEiJ_T0055655.1 MGP_CASTEiJ_G0025157.1 mouse_genomes_project 2 86778865 86779801 - MGP_CASTEiJ_P0055655 Olfr1055 protein_coding protein_coding MGP_CASTEiJ_T0011165.1 MGP_CASTEiJ_G0009353.1 mouse_genomes_project 2 38910831 38911001 - Gm27348 misc_RNA misc_RNA MGP_CASTEiJ_T0056865.1 MGP_CASTEiJ_G0025539.1 mouse_genomes_project 2 121917667 121933048 + MGP_CASTEiJ_P0056865 Gm28042 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056867.1 MGP_CASTEiJ_G0025539.1 mouse_genomes_project 2 121917678 121933048 + MGP_CASTEiJ_P0056867 Gm28042 protein_coding protein_coding MGP_CASTEiJ_T0056868.1 MGP_CASTEiJ_G0025539.1 mouse_genomes_project 2 121917681 121931614 + MGP_CASTEiJ_P0056868 Gm28042 protein_coding protein_coding MGP_CASTEiJ_T0056872.1 MGP_CASTEiJ_G0025539.1 mouse_genomes_project 2 121921887 121925026 + MGP_CASTEiJ_P0056872 Gm28042 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056587.1 MGP_CASTEiJ_G0025476.1 mouse_genomes_project 2 114135914 114158266 - Ryr3 protein_coding processed_transcript MGP_CASTEiJ_T0056588.1 MGP_CASTEiJ_G0025476.1 mouse_genomes_project 2 114135923 114751961 - MGP_CASTEiJ_P0056588 Ryr3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056589.1 MGP_CASTEiJ_G0025476.1 mouse_genomes_project 2 114135939 114560453 - MGP_CASTEiJ_P0056589 Ryr3 protein_coding protein_coding MGP_CASTEiJ_T0056590.1 MGP_CASTEiJ_G0025476.1 mouse_genomes_project 2 114135939 114752022 - MGP_CASTEiJ_P0056590 Ryr3 protein_coding protein_coding MGP_CASTEiJ_T0056591.1 MGP_CASTEiJ_G0025476.1 mouse_genomes_project 2 114136605 114752039 - Ryr3 protein_coding processed_transcript MGP_CASTEiJ_T0056592.1 MGP_CASTEiJ_G0025476.1 mouse_genomes_project 2 114141196 114145141 - Ryr3 protein_coding processed_transcript MGP_CASTEiJ_T0056593.1 MGP_CASTEiJ_G0025476.1 mouse_genomes_project 2 114378945 114428301 - Ryr3 protein_coding retained_intron MGP_CASTEiJ_T0056594.1 MGP_CASTEiJ_G0025476.1 mouse_genomes_project 2 114490597 114752033 - Ryr3 protein_coding retained_intron MGP_CASTEiJ_T0056595.1 MGP_CASTEiJ_G0025476.1 mouse_genomes_project 2 114520556 114752062 - Ryr3 protein_coding retained_intron MGP_CASTEiJ_T0010156.1 MGP_CASTEiJ_G0008344.1 mouse_genomes_project 2 95366657 95366757 - Mir670 miRNA miRNA MGP_CASTEiJ_T0055013.1 MGP_CASTEiJ_G0024995.1 mouse_genomes_project 2 68848942 69029206 - MGP_CASTEiJ_P0055013 Lrp2 protein_coding protein_coding MGP_CASTEiJ_T0055014.1 MGP_CASTEiJ_G0024995.1 mouse_genomes_project 2 68862702 69029079 - MGP_CASTEiJ_P0055014 Lrp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055015.1 MGP_CASTEiJ_G0024995.1 mouse_genomes_project 2 68938052 69029170 - MGP_CASTEiJ_P0055015 Lrp2 protein_coding protein_coding MGP_CASTEiJ_T0055016.1 MGP_CASTEiJ_G0024995.1 mouse_genomes_project 2 68939458 68940987 - Lrp2 protein_coding processed_transcript MGP_CASTEiJ_T0055017.1 MGP_CASTEiJ_G0024995.1 mouse_genomes_project 2 68958202 69029170 - MGP_CASTEiJ_P0055017 Lrp2 protein_coding protein_coding MGP_CASTEiJ_T0099635.1 MGP_CASTEiJ_G0036548.1 mouse_genomes_project 2 52208607 52208713 - Gm25898 snRNA snRNA MGP_CASTEiJ_T0013261.1 MGP_CASTEiJ_G0011424.1 mouse_genomes_project 2 99424145 99424317 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000992.1 MGP_CASTEiJ_G0000928.1 mouse_genomes_project 2 9645097 9648520 - TEC TEC MGP_CASTEiJ_T0017048.1 MGP_CASTEiJ_G0014749.1 mouse_genomes_project 2 87364830 87367045 - processed_transcript processed_transcript MGP_CASTEiJ_T0055741.1 MGP_CASTEiJ_G0025231.1 mouse_genomes_project 2 88658344 88659325 - MGP_CASTEiJ_P0055741 Olfr1164 protein_coding protein_coding MGP_CASTEiJ_T0098568.1 MGP_CASTEiJ_G0035499.1 mouse_genomes_project 2 27235439 27235574 + Gm24976 rRNA rRNA MGP_CASTEiJ_T0013291.1 MGP_CASTEiJ_G0011454.1 mouse_genomes_project 2 109863522 109864150 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101754.1 MGP_CASTEiJ_G0038551.1 mouse_genomes_project 2 36947903 36964363 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0007181.1 MGP_CASTEiJ_G0005902.1 mouse_genomes_project 2 160101624 160104200 - Gm14225 lincRNA lincRNA MGP_CASTEiJ_T0003766.1 MGP_CASTEiJ_G0003377.1 mouse_genomes_project 2 2074466 2078738 + 4930551O13Rik antisense antisense MGP_CASTEiJ_T0013435.1 MGP_CASTEiJ_G0011598.1 mouse_genomes_project 2 169897770 169898131 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013363.1 MGP_CASTEiJ_G0011526.1 mouse_genomes_project 2 142982612 142982993 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052487.1 MGP_CASTEiJ_G0024551.1 mouse_genomes_project 2 10575347 10794350 - MGP_CASTEiJ_P0052487 Cubn protein_coding unknown_likely_coding MGP_CASTEiJ_T0052488.1 MGP_CASTEiJ_G0024551.1 mouse_genomes_project 2 10575354 10794350 - MGP_CASTEiJ_P0052488 Cubn protein_coding protein_coding MGP_CASTEiJ_T0052489.1 MGP_CASTEiJ_G0024551.1 mouse_genomes_project 2 10721234 10755411 - Cubn protein_coding retained_intron MGP_CASTEiJ_T0052490.1 MGP_CASTEiJ_G0024551.1 mouse_genomes_project 2 10756421 10759255 - Cubn protein_coding retained_intron MGP_CASTEiJ_T0053654.1 MGP_CASTEiJ_G0024761.1 mouse_genomes_project 2 28124731 28189225 + MGP_CASTEiJ_P0053654 Nup188 protein_coding protein_coding MGP_CASTEiJ_T0053655.1 MGP_CASTEiJ_G0024761.1 mouse_genomes_project 2 28124731 28149859 + MGP_CASTEiJ_P0053655 Nup188 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053656.1 MGP_CASTEiJ_G0024761.1 mouse_genomes_project 2 28124751 28146141 + Nup188 protein_coding processed_transcript MGP_CASTEiJ_T0053657.1 MGP_CASTEiJ_G0024761.1 mouse_genomes_project 2 28124758 28145859 + MGP_CASTEiJ_P0053657 Nup188 protein_coding protein_coding MGP_CASTEiJ_T0053658.1 MGP_CASTEiJ_G0024761.1 mouse_genomes_project 2 28124761 28145858 + MGP_CASTEiJ_P0053658 Nup188 protein_coding protein_coding MGP_CASTEiJ_T0053659.1 MGP_CASTEiJ_G0024761.1 mouse_genomes_project 2 28124763 28170138 + Nup188 protein_coding retained_intron MGP_CASTEiJ_T0053660.1 MGP_CASTEiJ_G0024761.1 mouse_genomes_project 2 28187899 28189104 + Nup188 protein_coding retained_intron MGP_CASTEiJ_T0004017.1 MGP_CASTEiJ_G0003563.1 mouse_genomes_project 2 162450447 162451358 - Gm14205 antisense antisense MGP_CASTEiJ_T0057784.1 MGP_CASTEiJ_G0025726.1 mouse_genomes_project 2 135429199 135441164 - Trmt6 protein_coding processed_transcript MGP_CASTEiJ_T0057785.1 MGP_CASTEiJ_G0025726.1 mouse_genomes_project 2 135429199 135435625 - Trmt6 protein_coding retained_intron MGP_CASTEiJ_T0057786.1 MGP_CASTEiJ_G0025726.1 mouse_genomes_project 2 135429199 135441163 - MGP_CASTEiJ_P0057786 Trmt6 protein_coding protein_coding MGP_CASTEiJ_T0057787.1 MGP_CASTEiJ_G0025726.1 mouse_genomes_project 2 135435406 135440867 - Trmt6 protein_coding processed_transcript MGP_CASTEiJ_T0057788.1 MGP_CASTEiJ_G0025726.1 mouse_genomes_project 2 135435431 135437461 - Trmt6 protein_coding processed_transcript MGP_CASTEiJ_T0057789.1 MGP_CASTEiJ_G0025726.1 mouse_genomes_project 2 135436718 135441122 - Trmt6 protein_coding processed_transcript MGP_CASTEiJ_T0055645.1 MGP_CASTEiJ_G0025147.1 mouse_genomes_project 2 86606021 86606966 - MGP_CASTEiJ_P0055645 Olfr1043 protein_coding protein_coding MGP_CASTEiJ_T0013247.1 MGP_CASTEiJ_G0011410.1 mouse_genomes_project 2 92642298 92643557 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007203.1 MGP_CASTEiJ_G0005922.1 mouse_genomes_project 2 170245372 170257317 - Gm11464 lincRNA lincRNA MGP_CASTEiJ_T0010172.1 MGP_CASTEiJ_G0008360.1 mouse_genomes_project 2 129307807 129307934 + Gm24081 miRNA miRNA MGP_CASTEiJ_T0057569.1 MGP_CASTEiJ_G0025683.1 mouse_genomes_project 2 132836981 132837913 + MGP_CASTEiJ_P0057569 Tmem239 protein_coding protein_coding MGP_CASTEiJ_T0059845.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184453901 184468172 - MGP_CASTEiJ_P0059845 Uckl1 protein_coding protein_coding MGP_CASTEiJ_T0059846.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184453901 184455140 - MGP_CASTEiJ_P0059846 Uckl1 protein_coding protein_coding MGP_CASTEiJ_T0059847.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184453904 184454550 - Uckl1 protein_coding retained_intron MGP_CASTEiJ_T0059848.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184453915 184468136 - MGP_CASTEiJ_P0059848 Uckl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059849.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184453917 184454634 - Uckl1 protein_coding retained_intron MGP_CASTEiJ_T0059850.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184453983 184457281 - Uckl1 protein_coding retained_intron MGP_CASTEiJ_T0059851.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184454366 184457868 - MGP_CASTEiJ_P0059851 Uckl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059852.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184454405 184457868 - Uckl1 protein_coding retained_intron MGP_CASTEiJ_T0059853.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184454516 184456115 - Uckl1 protein_coding retained_intron MGP_CASTEiJ_T0059854.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184454602 184457877 - Uckl1 protein_coding retained_intron MGP_CASTEiJ_T0059855.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184454758 184459217 - Uckl1 protein_coding processed_transcript MGP_CASTEiJ_T0059856.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184455113 184456899 - Uckl1 protein_coding processed_transcript MGP_CASTEiJ_T0059857.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184457065 184459241 - Uckl1 protein_coding retained_intron MGP_CASTEiJ_T0059858.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184457993 184471066 - MGP_CASTEiJ_P0059858 Uckl1 protein_coding protein_coding MGP_CASTEiJ_T0059859.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184458038 184459575 - Uckl1 protein_coding retained_intron MGP_CASTEiJ_T0059860.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184458049 184463689 - MGP_CASTEiJ_P0059860 Uckl1 protein_coding protein_coding MGP_CASTEiJ_T0059861.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184459025 184468142 - Uckl1 protein_coding retained_intron MGP_CASTEiJ_T0059862.1 MGP_CASTEiJ_G0026203.1 mouse_genomes_project 2 184459406 184467790 - MGP_CASTEiJ_P0059862 Uckl1 protein_coding protein_coding MGP_CASTEiJ_T0057592.1 MGP_CASTEiJ_G0025689.1 mouse_genomes_project 2 133016667 133018601 - MGP_CASTEiJ_P0057592 Avp protein_coding protein_coding MGP_CASTEiJ_T0055746.1 MGP_CASTEiJ_G0025236.1 mouse_genomes_project 2 89006109 89007057 + MGP_CASTEiJ_P0055746 Olfr1176 protein_coding protein_coding MGP_CASTEiJ_T0056675.1 MGP_CASTEiJ_G0025496.1 mouse_genomes_project 2 120178260 120218845 + MGP_CASTEiJ_P0056675 Eif2ak4 protein_coding protein_coding MGP_CASTEiJ_T0056676.1 MGP_CASTEiJ_G0025496.1 mouse_genomes_project 2 120178272 120271756 + MGP_CASTEiJ_P0056676 Eif2ak4 protein_coding protein_coding MGP_CASTEiJ_T0056677.1 MGP_CASTEiJ_G0025496.1 mouse_genomes_project 2 120178489 120271930 + MGP_CASTEiJ_P0056677 Eif2ak4 protein_coding protein_coding MGP_CASTEiJ_T0056678.1 MGP_CASTEiJ_G0025496.1 mouse_genomes_project 2 120178754 120271927 + MGP_CASTEiJ_P0056678 Eif2ak4 protein_coding protein_coding MGP_CASTEiJ_T0056679.1 MGP_CASTEiJ_G0025496.1 mouse_genomes_project 2 120178754 120271928 + MGP_CASTEiJ_P0056679 Eif2ak4 protein_coding protein_coding MGP_CASTEiJ_T0056680.1 MGP_CASTEiJ_G0025496.1 mouse_genomes_project 2 120229493 120244915 + MGP_CASTEiJ_P0056680 Eif2ak4 protein_coding protein_coding MGP_CASTEiJ_T0056681.1 MGP_CASTEiJ_G0025496.1 mouse_genomes_project 2 120249743 120256354 + Eif2ak4 protein_coding processed_transcript MGP_CASTEiJ_T0057674.1 MGP_CASTEiJ_G0025706.1 mouse_genomes_project 2 133683720 133695320 + MGP_CASTEiJ_P0057674 Cdc25b protein_coding protein_coding MGP_CASTEiJ_T0057675.1 MGP_CASTEiJ_G0025706.1 mouse_genomes_project 2 133683729 133695322 + MGP_CASTEiJ_P0057675 Cdc25b protein_coding protein_coding MGP_CASTEiJ_T0057676.1 MGP_CASTEiJ_G0025706.1 mouse_genomes_project 2 133684929 133688710 + Cdc25b protein_coding retained_intron MGP_CASTEiJ_T0057677.1 MGP_CASTEiJ_G0025706.1 mouse_genomes_project 2 133688141 133688894 + Cdc25b protein_coding retained_intron MGP_CASTEiJ_T0057678.1 MGP_CASTEiJ_G0025706.1 mouse_genomes_project 2 133688534 133690222 + Cdc25b protein_coding retained_intron MGP_CASTEiJ_T0057679.1 MGP_CASTEiJ_G0025706.1 mouse_genomes_project 2 133688604 133690109 + Cdc25b protein_coding retained_intron MGP_CASTEiJ_T0057680.1 MGP_CASTEiJ_G0025706.1 mouse_genomes_project 2 133689688 133691257 + Cdc25b protein_coding retained_intron MGP_CASTEiJ_T0054382.1 MGP_CASTEiJ_G0024889.1 mouse_genomes_project 2 35560088 35617730 - MGP_CASTEiJ_P0054382 Rc3h2 protein_coding protein_coding MGP_CASTEiJ_T0054383.1 MGP_CASTEiJ_G0024889.1 mouse_genomes_project 2 35563112 35617544 - MGP_CASTEiJ_P0054383 Rc3h2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054384.1 MGP_CASTEiJ_G0024889.1 mouse_genomes_project 2 35566821 35567535 - Rc3h2 protein_coding retained_intron MGP_CASTEiJ_T0054385.1 MGP_CASTEiJ_G0024889.1 mouse_genomes_project 2 35567763 35571217 - Rc3h2 protein_coding retained_intron MGP_CASTEiJ_T0054386.1 MGP_CASTEiJ_G0024889.1 mouse_genomes_project 2 35581571 35583819 - Rc3h2 protein_coding retained_intron MGP_CASTEiJ_T0054387.1 MGP_CASTEiJ_G0024889.1 mouse_genomes_project 2 35590018 35592719 - Rc3h2 protein_coding retained_intron MGP_CASTEiJ_T0054388.1 MGP_CASTEiJ_G0024889.1 mouse_genomes_project 2 35602408 35608942 - Rc3h2 protein_coding processed_transcript MGP_CASTEiJ_T0054389.1 MGP_CASTEiJ_G0024889.1 mouse_genomes_project 2 35607738 35611218 - Rc3h2 protein_coding retained_intron MGP_CASTEiJ_T0098871.1 MGP_CASTEiJ_G0035796.1 mouse_genomes_project 2 148407912 148453777 + Gm14093 sense_intronic sense_intronic MGP_CASTEiJ_T0010098.1 MGP_CASTEiJ_G0008286.1 mouse_genomes_project 2 20084007 20084094 + Gm23636 miRNA miRNA MGP_CASTEiJ_T0058721.1 MGP_CASTEiJ_G0025946.1 mouse_genomes_project 2 160456441 160462152 + MGP_CASTEiJ_P0058721 Myl9 protein_coding protein_coding MGP_CASTEiJ_T0058722.1 MGP_CASTEiJ_G0025946.1 mouse_genomes_project 2 160456468 160461853 + Myl9 protein_coding processed_transcript MGP_CASTEiJ_T0058723.1 MGP_CASTEiJ_G0025946.1 mouse_genomes_project 2 160456471 160461026 + Myl9 protein_coding processed_transcript MGP_CASTEiJ_T0058724.1 MGP_CASTEiJ_G0025946.1 mouse_genomes_project 2 160459051 160461656 + Myl9 protein_coding processed_transcript MGP_CASTEiJ_T0006987.1 MGP_CASTEiJ_G0005745.1 mouse_genomes_project 2 30566100 30569058 + Gm13412 lincRNA lincRNA MGP_CASTEiJ_T0099670.1 MGP_CASTEiJ_G0036583.1 mouse_genomes_project 2 161512281 161512380 + Gm23463 snRNA snRNA MGP_CASTEiJ_T0054761.1 MGP_CASTEiJ_G0024953.1 mouse_genomes_project 2 58826216 58860284 - MGP_CASTEiJ_P0054761 Wdsub1 protein_coding protein_coding MGP_CASTEiJ_T0054762.1 MGP_CASTEiJ_G0024953.1 mouse_genomes_project 2 58829033 58860247 - MGP_CASTEiJ_P0054762 Wdsub1 protein_coding protein_coding MGP_CASTEiJ_T0054763.1 MGP_CASTEiJ_G0024953.1 mouse_genomes_project 2 58836354 58837759 - Wdsub1 protein_coding processed_transcript MGP_CASTEiJ_T0054764.1 MGP_CASTEiJ_G0024953.1 mouse_genomes_project 2 58836363 58836711 - Wdsub1 protein_coding processed_transcript MGP_CASTEiJ_T0054765.1 MGP_CASTEiJ_G0024953.1 mouse_genomes_project 2 58836591 58854682 - MGP_CASTEiJ_P0054765 Wdsub1 protein_coding protein_coding MGP_CASTEiJ_T0054766.1 MGP_CASTEiJ_G0024953.1 mouse_genomes_project 2 58836718 58838592 - Wdsub1 protein_coding processed_transcript MGP_CASTEiJ_T0054767.1 MGP_CASTEiJ_G0024953.1 mouse_genomes_project 2 58837705 58860257 - Wdsub1 protein_coding processed_transcript MGP_CASTEiJ_T0054768.1 MGP_CASTEiJ_G0024953.1 mouse_genomes_project 2 58848214 58856037 - MGP_CASTEiJ_P0054768 Wdsub1 protein_coding protein_coding MGP_CASTEiJ_T0054769.1 MGP_CASTEiJ_G0024953.1 mouse_genomes_project 2 58850884 58856219 - Wdsub1 protein_coding processed_transcript MGP_CASTEiJ_T0054770.1 MGP_CASTEiJ_G0024953.1 mouse_genomes_project 2 58854506 58860286 - MGP_CASTEiJ_P0054770 Wdsub1 protein_coding protein_coding MGP_CASTEiJ_T0054771.1 MGP_CASTEiJ_G0024953.1 mouse_genomes_project 2 58854507 58860274 - MGP_CASTEiJ_P0054771 Wdsub1 protein_coding protein_coding MGP_CASTEiJ_T0054772.1 MGP_CASTEiJ_G0024953.1 mouse_genomes_project 2 58856204 58860291 - Wdsub1 protein_coding processed_transcript MGP_CASTEiJ_T0056553.1 MGP_CASTEiJ_G0025455.1 mouse_genomes_project 2 113280336 113281275 + MGP_CASTEiJ_P0056553 Olfr1301 protein_coding protein_coding MGP_CASTEiJ_T0052391.1 MGP_CASTEiJ_G0024540.1 mouse_genomes_project 2 8872359 8891691 - MGP_CASTEiJ_P0052391 Rbm17 protein_coding protein_coding MGP_CASTEiJ_T0052392.1 MGP_CASTEiJ_G0024540.1 mouse_genomes_project 2 8872361 8872913 - Rbm17 protein_coding retained_intron MGP_CASTEiJ_T0052393.1 MGP_CASTEiJ_G0024540.1 mouse_genomes_project 2 8872363 8874088 - Rbm17 protein_coding retained_intron MGP_CASTEiJ_T0052394.1 MGP_CASTEiJ_G0024540.1 mouse_genomes_project 2 8874310 8877054 - Rbm17 protein_coding retained_intron MGP_CASTEiJ_T0052395.1 MGP_CASTEiJ_G0024540.1 mouse_genomes_project 2 8876987 8878951 - Rbm17 protein_coding retained_intron MGP_CASTEiJ_T0052396.1 MGP_CASTEiJ_G0024540.1 mouse_genomes_project 2 8884525 8892585 - MGP_CASTEiJ_P0052396 Rbm17 protein_coding protein_coding MGP_CASTEiJ_T0056704.1 MGP_CASTEiJ_G0025502.1 mouse_genomes_project 2 120517249 120539835 - MGP_CASTEiJ_P0056704 Plcb2 protein_coding protein_coding MGP_CASTEiJ_T0056705.1 MGP_CASTEiJ_G0025502.1 mouse_genomes_project 2 120517730 120539756 - MGP_CASTEiJ_P0056705 Plcb2 protein_coding protein_coding MGP_CASTEiJ_T0056706.1 MGP_CASTEiJ_G0025502.1 mouse_genomes_project 2 120517914 120521105 - Plcb2 protein_coding retained_intron MGP_CASTEiJ_T0056707.1 MGP_CASTEiJ_G0025502.1 mouse_genomes_project 2 120518433 120519476 - Plcb2 protein_coding retained_intron MGP_CASTEiJ_T0056708.1 MGP_CASTEiJ_G0025502.1 mouse_genomes_project 2 120518694 120539811 - MGP_CASTEiJ_P0056708 Plcb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056709.1 MGP_CASTEiJ_G0025502.1 mouse_genomes_project 2 120520551 120523844 - Plcb2 protein_coding retained_intron MGP_CASTEiJ_T0056710.1 MGP_CASTEiJ_G0025502.1 mouse_genomes_project 2 120523972 120539788 - Plcb2 protein_coding retained_intron MGP_CASTEiJ_T0052924.1 MGP_CASTEiJ_G0024629.1 mouse_genomes_project 2 22787830 22788676 + MGP_CASTEiJ_P0052924 Tmem203 protein_coding protein_coding MGP_CASTEiJ_T0055147.1 MGP_CASTEiJ_G0025019.1 mouse_genomes_project 2 71046578 71124205 + MGP_CASTEiJ_P0055147 Metap1d protein_coding protein_coding MGP_CASTEiJ_T0055148.1 MGP_CASTEiJ_G0025019.1 mouse_genomes_project 2 71046635 71114960 + Metap1d protein_coding processed_transcript MGP_CASTEiJ_T0055149.1 MGP_CASTEiJ_G0025019.1 mouse_genomes_project 2 71046653 71124208 + Metap1d protein_coding processed_transcript MGP_CASTEiJ_T0055150.1 MGP_CASTEiJ_G0025019.1 mouse_genomes_project 2 71046665 71123791 + Metap1d protein_coding processed_transcript MGP_CASTEiJ_T0055151.1 MGP_CASTEiJ_G0025019.1 mouse_genomes_project 2 71109300 71116153 + Metap1d protein_coding processed_transcript MGP_CASTEiJ_T0055152.1 MGP_CASTEiJ_G0025019.1 mouse_genomes_project 2 71114416 71115286 + Metap1d protein_coding processed_transcript MGP_CASTEiJ_T0057672.1 MGP_CASTEiJ_G0025704.1 mouse_genomes_project 2 133667025 133671436 - MGP_CASTEiJ_P0057672 Spef1 protein_coding protein_coding MGP_CASTEiJ_T0059280.1 MGP_CASTEiJ_G0026078.1 mouse_genomes_project 2 170879060 171045309 - MGP_CASTEiJ_P0059280 Prex1 protein_coding protein_coding MGP_CASTEiJ_T0059281.1 MGP_CASTEiJ_G0026078.1 mouse_genomes_project 2 170879677 170956639 - MGP_CASTEiJ_P0059281 Prex1 protein_coding protein_coding MGP_CASTEiJ_T0059282.1 MGP_CASTEiJ_G0026078.1 mouse_genomes_project 2 170879683 170897985 - MGP_CASTEiJ_P0059282 Prex1 protein_coding protein_coding MGP_CASTEiJ_T0059283.1 MGP_CASTEiJ_G0026078.1 mouse_genomes_project 2 170881019 170887253 - Prex1 protein_coding processed_transcript MGP_CASTEiJ_T0059284.1 MGP_CASTEiJ_G0026078.1 mouse_genomes_project 2 170915377 170918786 - Prex1 protein_coding retained_intron MGP_CASTEiJ_T0059285.1 MGP_CASTEiJ_G0026078.1 mouse_genomes_project 2 170951080 171031962 - Prex1 protein_coding processed_transcript MGP_CASTEiJ_T0059286.1 MGP_CASTEiJ_G0026078.1 mouse_genomes_project 2 170962070 171045382 - Prex1 protein_coding retained_intron MGP_CASTEiJ_T0059287.1 MGP_CASTEiJ_G0026078.1 mouse_genomes_project 2 170962283 171045193 - Prex1 protein_coding retained_intron MGP_CASTEiJ_T0001054.1 MGP_CASTEiJ_G0000989.1 mouse_genomes_project 2 159731393 159733060 - TEC TEC MGP_CASTEiJ_T0099636.1 MGP_CASTEiJ_G0036549.1 mouse_genomes_project 2 53882200 53882341 + Gm25489 snRNA snRNA MGP_CASTEiJ_T0058442.1 MGP_CASTEiJ_G0025905.1 mouse_genomes_project 2 158438360 158458507 - MGP_CASTEiJ_P0058442 Eif2s2 protein_coding protein_coding MGP_CASTEiJ_T0058443.1 MGP_CASTEiJ_G0025905.1 mouse_genomes_project 2 158450115 158458634 - Eif2s2 protein_coding retained_intron MGP_CASTEiJ_T0058444.1 MGP_CASTEiJ_G0025905.1 mouse_genomes_project 2 158450150 158458611 - Eif2s2 protein_coding retained_intron MGP_CASTEiJ_T0055144.1 MGP_CASTEiJ_G0025018.1 mouse_genomes_project 2 70976667 71028966 + MGP_CASTEiJ_P0055144 Hat1 protein_coding protein_coding MGP_CASTEiJ_T0055145.1 MGP_CASTEiJ_G0025018.1 mouse_genomes_project 2 70976969 71028966 + MGP_CASTEiJ_P0055145 Hat1 protein_coding protein_coding MGP_CASTEiJ_T0055146.1 MGP_CASTEiJ_G0025018.1 mouse_genomes_project 2 71002788 71025290 + Hat1 protein_coding processed_transcript MGP_CASTEiJ_T0053281.1 MGP_CASTEiJ_G0024696.1 mouse_genomes_project 2 24534682 24537261 + MGP_CASTEiJ_P0053281 protein_coding protein_coding MGP_CASTEiJ_T0053282.1 MGP_CASTEiJ_G0024696.1 mouse_genomes_project 2 24534735 24536992 + protein_coding processed_transcript MGP_CASTEiJ_T0053283.1 MGP_CASTEiJ_G0024696.1 mouse_genomes_project 2 24534739 24537261 + protein_coding processed_transcript MGP_CASTEiJ_T0053284.1 MGP_CASTEiJ_G0024696.1 mouse_genomes_project 2 24534924 24537261 + protein_coding processed_transcript MGP_CASTEiJ_T0053285.1 MGP_CASTEiJ_G0024696.1 mouse_genomes_project 2 24536124 24537261 + protein_coding processed_transcript MGP_CASTEiJ_T0053286.1 MGP_CASTEiJ_G0024696.1 mouse_genomes_project 2 24536553 24537261 + protein_coding processed_transcript MGP_CASTEiJ_T0053287.1 MGP_CASTEiJ_G0024696.1 mouse_genomes_project 2 24536605 24537155 + protein_coding processed_transcript MGP_CASTEiJ_T0059130.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169009270 169016226 + MGP_CASTEiJ_P0059130 Ctsa protein_coding protein_coding MGP_CASTEiJ_T0059131.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169009270 169017266 + MGP_CASTEiJ_P0059131 Ctsa protein_coding protein_coding MGP_CASTEiJ_T0059132.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169009284 169010157 + Ctsa protein_coding processed_transcript MGP_CASTEiJ_T0059133.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169009298 169017266 + MGP_CASTEiJ_P0059133 Ctsa protein_coding protein_coding MGP_CASTEiJ_T0059134.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169009306 169010460 + MGP_CASTEiJ_P0059134 Ctsa protein_coding protein_coding MGP_CASTEiJ_T0059135.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169009323 169010177 + Ctsa protein_coding processed_transcript MGP_CASTEiJ_T0059136.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169009323 169012121 + MGP_CASTEiJ_P0059136 Ctsa protein_coding protein_coding MGP_CASTEiJ_T0059137.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169010204 169010819 + Ctsa protein_coding retained_intron MGP_CASTEiJ_T0059138.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169010212 169013219 + MGP_CASTEiJ_P0059138 Ctsa protein_coding protein_coding MGP_CASTEiJ_T0059139.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169010244 169011272 + Ctsa protein_coding retained_intron MGP_CASTEiJ_T0059140.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169010255 169012694 + MGP_CASTEiJ_P0059140 Ctsa protein_coding protein_coding MGP_CASTEiJ_T0059141.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169010427 169011591 + Ctsa protein_coding retained_intron MGP_CASTEiJ_T0059142.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169010427 169013252 + Ctsa protein_coding retained_intron MGP_CASTEiJ_T0059143.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169010470 169012689 + Ctsa protein_coding retained_intron MGP_CASTEiJ_T0059144.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169010707 169012151 + Ctsa protein_coding processed_transcript MGP_CASTEiJ_T0059145.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169010870 169011899 + Ctsa protein_coding retained_intron MGP_CASTEiJ_T0059146.1 MGP_CASTEiJ_G0026055.1 mouse_genomes_project 2 169013398 169013867 + Ctsa protein_coding retained_intron MGP_CASTEiJ_T0007018.1 MGP_CASTEiJ_G0005770.1 mouse_genomes_project 2 50472953 50545502 - Gm13490 lincRNA lincRNA MGP_CASTEiJ_T0056911.1 MGP_CASTEiJ_G0025548.1 mouse_genomes_project 2 122305464 122325812 + Ganc protein_coding processed_transcript MGP_CASTEiJ_T0056912.1 MGP_CASTEiJ_G0025548.1 mouse_genomes_project 2 122305769 122321672 + Ganc protein_coding processed_transcript MGP_CASTEiJ_T0056913.1 MGP_CASTEiJ_G0025548.1 mouse_genomes_project 2 122305770 122364975 + Ganc protein_coding processed_transcript MGP_CASTEiJ_T0056914.1 MGP_CASTEiJ_G0025548.1 mouse_genomes_project 2 122305778 122326591 + Ganc protein_coding processed_transcript MGP_CASTEiJ_T0056915.1 MGP_CASTEiJ_G0025548.1 mouse_genomes_project 2 122305792 122368808 + Ganc protein_coding processed_transcript MGP_CASTEiJ_T0056916.1 MGP_CASTEiJ_G0025548.1 mouse_genomes_project 2 122305882 122321670 + Ganc protein_coding processed_transcript MGP_CASTEiJ_T0056917.1 MGP_CASTEiJ_G0025548.1 mouse_genomes_project 2 122305906 122317839 + Ganc protein_coding processed_transcript MGP_CASTEiJ_T0056918.1 MGP_CASTEiJ_G0025548.1 mouse_genomes_project 2 122306336 122369662 + MGP_CASTEiJ_P0056918 Ganc protein_coding protein_coding MGP_CASTEiJ_T0056919.1 MGP_CASTEiJ_G0025548.1 mouse_genomes_project 2 122306342 122316541 + Ganc protein_coding processed_transcript MGP_CASTEiJ_T0056920.1 MGP_CASTEiJ_G0025548.1 mouse_genomes_project 2 122306548 122368827 + Ganc protein_coding processed_transcript MGP_CASTEiJ_T0056921.1 MGP_CASTEiJ_G0025548.1 mouse_genomes_project 2 122307694 122368177 + Ganc protein_coding processed_transcript MGP_CASTEiJ_T0056922.1 MGP_CASTEiJ_G0025548.1 mouse_genomes_project 2 122313806 122341253 + Ganc protein_coding retained_intron MGP_CASTEiJ_T0056923.1 MGP_CASTEiJ_G0025548.1 mouse_genomes_project 2 122325653 122334829 + Ganc protein_coding processed_transcript MGP_CASTEiJ_T0056924.1 MGP_CASTEiJ_G0025548.1 mouse_genomes_project 2 122360288 122368299 + Ganc protein_coding retained_intron MGP_CASTEiJ_T0057407.1 MGP_CASTEiJ_G0025641.1 mouse_genomes_project 2 129743932 129810310 - MGP_CASTEiJ_P0057407 Kcnip3 protein_coding protein_coding MGP_CASTEiJ_T0057408.1 MGP_CASTEiJ_G0025641.1 mouse_genomes_project 2 129743932 129810310 - MGP_CASTEiJ_P0057408 Kcnip3 protein_coding protein_coding MGP_CASTEiJ_T0057409.1 MGP_CASTEiJ_G0025641.1 mouse_genomes_project 2 129745560 129770332 - MGP_CASTEiJ_P0057409 Kcnip3 protein_coding protein_coding MGP_CASTEiJ_T0057410.1 MGP_CASTEiJ_G0025641.1 mouse_genomes_project 2 129745668 129811034 - Kcnip3 protein_coding processed_transcript MGP_CASTEiJ_T0053827.1 MGP_CASTEiJ_G0024782.1 mouse_genomes_project 2 29420049 29481324 + MGP_CASTEiJ_P0053827 Ass1 protein_coding protein_coding MGP_CASTEiJ_T0053828.1 MGP_CASTEiJ_G0024782.1 mouse_genomes_project 2 29456260 29470814 + Ass1 protein_coding retained_intron MGP_CASTEiJ_T0053829.1 MGP_CASTEiJ_G0024782.1 mouse_genomes_project 2 29459199 29475437 + Ass1 protein_coding retained_intron MGP_CASTEiJ_T0053830.1 MGP_CASTEiJ_G0024782.1 mouse_genomes_project 2 29479140 29481183 + Ass1 protein_coding retained_intron MGP_CASTEiJ_T0056008.1 MGP_CASTEiJ_G0025335.1 mouse_genomes_project 2 92160229 92350850 - MGP_CASTEiJ_P0056008 1110051M20Rik protein_coding protein_coding MGP_CASTEiJ_T0056009.1 MGP_CASTEiJ_G0025335.1 mouse_genomes_project 2 92165481 92350842 - MGP_CASTEiJ_P0056009 1110051M20Rik protein_coding protein_coding MGP_CASTEiJ_T0056010.1 MGP_CASTEiJ_G0025335.1 mouse_genomes_project 2 92168362 92169691 - 1110051M20Rik protein_coding processed_transcript MGP_CASTEiJ_T0056011.1 MGP_CASTEiJ_G0025335.1 mouse_genomes_project 2 92194701 92350871 - 1110051M20Rik protein_coding processed_transcript MGP_CASTEiJ_T0056012.1 MGP_CASTEiJ_G0025335.1 mouse_genomes_project 2 92285829 92350897 - 1110051M20Rik protein_coding processed_transcript MGP_CASTEiJ_T0056013.1 MGP_CASTEiJ_G0025335.1 mouse_genomes_project 2 92321621 92350865 - 1110051M20Rik protein_coding processed_transcript MGP_CASTEiJ_T0056014.1 MGP_CASTEiJ_G0025335.1 mouse_genomes_project 2 92321670 92350932 - 1110051M20Rik protein_coding processed_transcript MGP_CASTEiJ_T0013137.1 MGP_CASTEiJ_G0011300.1 mouse_genomes_project 2 53187076 53188561 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058900.1 MGP_CASTEiJ_G0025985.1 mouse_genomes_project 2 164674512 164706916 + MGP_CASTEiJ_P0058900 Plcg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058901.1 MGP_CASTEiJ_G0025985.1 mouse_genomes_project 2 164674522 164734692 + MGP_CASTEiJ_P0058901 Plcg1 protein_coding protein_coding MGP_CASTEiJ_T0058902.1 MGP_CASTEiJ_G0025985.1 mouse_genomes_project 2 164674911 164692337 + MGP_CASTEiJ_P0058902 Plcg1 protein_coding protein_coding MGP_CASTEiJ_T0058903.1 MGP_CASTEiJ_G0025985.1 mouse_genomes_project 2 164674945 164707699 + MGP_CASTEiJ_P0058903 Plcg1 protein_coding protein_coding MGP_CASTEiJ_T0058904.1 MGP_CASTEiJ_G0025985.1 mouse_genomes_project 2 164674984 164714191 + MGP_CASTEiJ_P0058904 Plcg1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058905.1 MGP_CASTEiJ_G0025985.1 mouse_genomes_project 2 164684255 164706920 + Plcg1 protein_coding processed_transcript MGP_CASTEiJ_T0058907.1 MGP_CASTEiJ_G0025985.1 mouse_genomes_project 2 164696919 164706569 + Plcg1 protein_coding retained_intron MGP_CASTEiJ_T0058908.1 MGP_CASTEiJ_G0025985.1 mouse_genomes_project 2 164696984 164703323 + Plcg1 protein_coding retained_intron MGP_CASTEiJ_T0058909.1 MGP_CASTEiJ_G0025985.1 mouse_genomes_project 2 164698499 164699297 + Plcg1 protein_coding retained_intron MGP_CASTEiJ_T0058910.1 MGP_CASTEiJ_G0025985.1 mouse_genomes_project 2 164698979 164699602 + Plcg1 protein_coding retained_intron MGP_CASTEiJ_T0058911.1 MGP_CASTEiJ_G0025985.1 mouse_genomes_project 2 164699004 164703861 + Plcg1 protein_coding processed_transcript MGP_CASTEiJ_T0058912.1 MGP_CASTEiJ_G0025985.1 mouse_genomes_project 2 164699338 164701579 + Plcg1 protein_coding retained_intron MGP_CASTEiJ_T0058913.1 MGP_CASTEiJ_G0025985.1 mouse_genomes_project 2 164704531 164706631 + MGP_CASTEiJ_P0058913 Plcg1 protein_coding protein_coding MGP_CASTEiJ_T0011196.1 MGP_CASTEiJ_G0009384.1 mouse_genomes_project 2 179350437 179350559 + Gm27869 misc_RNA misc_RNA MGP_CASTEiJ_T0056360.1 MGP_CASTEiJ_G0025394.1 mouse_genomes_project 2 105162443 105186665 + MGP_CASTEiJ_P0056360 Lmo2 protein_coding protein_coding MGP_CASTEiJ_T0056361.1 MGP_CASTEiJ_G0025394.1 mouse_genomes_project 2 105162451 105187496 + MGP_CASTEiJ_P0056361 Lmo2 protein_coding protein_coding MGP_CASTEiJ_T0056363.1 MGP_CASTEiJ_G0025394.1 mouse_genomes_project 2 105173302 105186707 + MGP_CASTEiJ_P0056363 Lmo2 protein_coding protein_coding MGP_CASTEiJ_T0056364.1 MGP_CASTEiJ_G0025394.1 mouse_genomes_project 2 105175718 105187473 + MGP_CASTEiJ_P0056364 Lmo2 protein_coding protein_coding MGP_CASTEiJ_T0056365.1 MGP_CASTEiJ_G0025394.1 mouse_genomes_project 2 105175730 105181733 + MGP_CASTEiJ_P0056365 Lmo2 protein_coding protein_coding MGP_CASTEiJ_T0056366.1 MGP_CASTEiJ_G0025394.1 mouse_genomes_project 2 105175812 105187492 + MGP_CASTEiJ_P0056366 Lmo2 protein_coding protein_coding MGP_CASTEiJ_T0056367.1 MGP_CASTEiJ_G0025394.1 mouse_genomes_project 2 105175833 105187457 + MGP_CASTEiJ_P0056367 Lmo2 protein_coding protein_coding MGP_CASTEiJ_T0056368.1 MGP_CASTEiJ_G0025394.1 mouse_genomes_project 2 105176768 105186531 + Lmo2 protein_coding processed_transcript MGP_CASTEiJ_T0055784.1 MGP_CASTEiJ_G0025270.1 mouse_genomes_project 2 89976311 89977247 - MGP_CASTEiJ_P0055784 Olfr1223 protein_coding protein_coding MGP_CASTEiJ_T0001018.1 MGP_CASTEiJ_G0000954.1 mouse_genomes_project 2 31088627 31092440 - TEC TEC MGP_CASTEiJ_T0013270.1 MGP_CASTEiJ_G0011433.1 mouse_genomes_project 2 103289093 103289540 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013453.1 MGP_CASTEiJ_G0011616.1 mouse_genomes_project 2 181757445 181758460 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102210.1 MGP_CASTEiJ_G0038935.1 mouse_genomes_project 2 37709075 37713367 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000981.1 MGP_CASTEiJ_G0000917.1 mouse_genomes_project 2 3601525 3604934 + TEC TEC MGP_CASTEiJ_T0055294.1 MGP_CASTEiJ_G0025050.1 mouse_genomes_project 2 74609910 74612053 + MGP_CASTEiJ_P0055294 Hoxd1 protein_coding protein_coding MGP_CASTEiJ_T0003760.1 MGP_CASTEiJ_G0003374.1 mouse_genomes_project 2 1111554 1122112 - 1700080N15Rik antisense antisense MGP_CASTEiJ_T0003761.1 MGP_CASTEiJ_G0003374.1 mouse_genomes_project 2 1111556 1122112 - 1700080N15Rik antisense antisense MGP_CASTEiJ_T0003762.1 MGP_CASTEiJ_G0003374.1 mouse_genomes_project 2 1116725 1122110 - 1700080N15Rik antisense antisense MGP_CASTEiJ_T0052875.1 MGP_CASTEiJ_G0024618.1 mouse_genomes_project 2 22713124 22715706 + MGP_CASTEiJ_P0052875 Nrarp protein_coding protein_coding MGP_CASTEiJ_T0058331.1 MGP_CASTEiJ_G0025873.1 mouse_genomes_project 2 156786535 156920884 - MGP_CASTEiJ_P0058331 Nol4l protein_coding protein_coding MGP_CASTEiJ_T0058332.1 MGP_CASTEiJ_G0025873.1 mouse_genomes_project 2 156797987 156828987 - Nol4l protein_coding processed_transcript MGP_CASTEiJ_T0058333.1 MGP_CASTEiJ_G0025873.1 mouse_genomes_project 2 156838201 156867690 - Nol4l protein_coding processed_transcript MGP_CASTEiJ_T0058334.1 MGP_CASTEiJ_G0025873.1 mouse_genomes_project 2 156844052 156878323 - Nol4l protein_coding processed_transcript MGP_CASTEiJ_T0058335.1 MGP_CASTEiJ_G0025873.1 mouse_genomes_project 2 156847870 156863800 - Nol4l protein_coding processed_transcript MGP_CASTEiJ_T0052149.1 MGP_CASTEiJ_G0024499.1 mouse_genomes_project 2 235364 280523 + MGP_CASTEiJ_P0052149 Nmt2 protein_coding protein_coding MGP_CASTEiJ_T0052150.1 MGP_CASTEiJ_G0024499.1 mouse_genomes_project 2 235388 260933 + Nmt2 protein_coding processed_transcript MGP_CASTEiJ_T0052151.1 MGP_CASTEiJ_G0024499.1 mouse_genomes_project 2 235404 282685 + MGP_CASTEiJ_P0052151 Nmt2 protein_coding protein_coding MGP_CASTEiJ_T0057024.1 MGP_CASTEiJ_G0025564.1 mouse_genomes_project 2 123091670 123096385 + Adal protein_coding retained_intron MGP_CASTEiJ_T0057025.1 MGP_CASTEiJ_G0025564.1 mouse_genomes_project 2 123091681 123107878 + MGP_CASTEiJ_P0057025 Adal protein_coding protein_coding MGP_CASTEiJ_T0057026.1 MGP_CASTEiJ_G0025564.1 mouse_genomes_project 2 123091686 123096383 + Adal protein_coding retained_intron MGP_CASTEiJ_T0057027.1 MGP_CASTEiJ_G0025564.1 mouse_genomes_project 2 123091695 123101698 + Adal protein_coding processed_transcript MGP_CASTEiJ_T0057028.1 MGP_CASTEiJ_G0025564.1 mouse_genomes_project 2 123091741 123106789 + MGP_CASTEiJ_P0057028 Adal protein_coding protein_coding MGP_CASTEiJ_T0057029.1 MGP_CASTEiJ_G0025564.1 mouse_genomes_project 2 123091763 123101886 + Adal protein_coding retained_intron MGP_CASTEiJ_T0057030.1 MGP_CASTEiJ_G0025564.1 mouse_genomes_project 2 123092038 123106747 + MGP_CASTEiJ_P0057030 Adal protein_coding protein_coding MGP_CASTEiJ_T0057031.1 MGP_CASTEiJ_G0025564.1 mouse_genomes_project 2 123101461 123107539 + Adal protein_coding retained_intron MGP_CASTEiJ_T0059037.1 MGP_CASTEiJ_G0026017.1 mouse_genomes_project 2 168315555 168316920 - MGP_CASTEiJ_P0059037 Wfdc12 protein_coding protein_coding MGP_CASTEiJ_T0054390.1 MGP_CASTEiJ_G0024890.1 mouse_genomes_project 2 35620165 35625658 - MGP_CASTEiJ_P0054390 Zbtb6 protein_coding protein_coding MGP_CASTEiJ_T0054391.1 MGP_CASTEiJ_G0024890.1 mouse_genomes_project 2 35620168 35637835 - MGP_CASTEiJ_P0054391 Zbtb6 protein_coding protein_coding MGP_CASTEiJ_T0059108.1 MGP_CASTEiJ_G0026047.1 mouse_genomes_project 2 168942429 168945487 + MGP_CASTEiJ_P0059108 Ube2c protein_coding protein_coding MGP_CASTEiJ_T0059109.1 MGP_CASTEiJ_G0026047.1 mouse_genomes_project 2 168942434 168950976 + MGP_CASTEiJ_P0059109 Ube2c protein_coding protein_coding MGP_CASTEiJ_T0013133.1 MGP_CASTEiJ_G0011296.1 mouse_genomes_project 2 51231856 51234285 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053407.1 MGP_CASTEiJ_G0024722.1 mouse_genomes_project 2 26237864 26268776 + MGP_CASTEiJ_P0053407 Ralgds protein_coding protein_coding MGP_CASTEiJ_T0053408.1 MGP_CASTEiJ_G0024722.1 mouse_genomes_project 2 26238065 26279634 + MGP_CASTEiJ_P0053408 Ralgds protein_coding protein_coding MGP_CASTEiJ_T0053409.1 MGP_CASTEiJ_G0024722.1 mouse_genomes_project 2 26259186 26279619 + MGP_CASTEiJ_P0053409 Ralgds protein_coding protein_coding MGP_CASTEiJ_T0053410.1 MGP_CASTEiJ_G0024722.1 mouse_genomes_project 2 26259373 26279191 + MGP_CASTEiJ_P0053410 Ralgds protein_coding protein_coding MGP_CASTEiJ_T0053411.1 MGP_CASTEiJ_G0024722.1 mouse_genomes_project 2 26259380 26279623 + Ralgds protein_coding retained_intron MGP_CASTEiJ_T0053412.1 MGP_CASTEiJ_G0024722.1 mouse_genomes_project 2 26266550 26268728 + Ralgds protein_coding retained_intron MGP_CASTEiJ_T0053413.1 MGP_CASTEiJ_G0024722.1 mouse_genomes_project 2 26268158 26270933 + MGP_CASTEiJ_P0053413 Ralgds protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053414.1 MGP_CASTEiJ_G0024722.1 mouse_genomes_project 2 26271150 26273774 + Ralgds protein_coding retained_intron MGP_CASTEiJ_T0053415.1 MGP_CASTEiJ_G0024722.1 mouse_genomes_project 2 26274103 26275492 + Ralgds protein_coding retained_intron MGP_CASTEiJ_T0053416.1 MGP_CASTEiJ_G0024722.1 mouse_genomes_project 2 26275573 26278880 + MGP_CASTEiJ_P0053416 Ralgds protein_coding protein_coding MGP_CASTEiJ_T0052153.1 MGP_CASTEiJ_G0024501.1 mouse_genomes_project 2 292632 297489 + MGP_CASTEiJ_P0052153 Acbd7 protein_coding protein_coding MGP_CASTEiJ_T0052154.1 MGP_CASTEiJ_G0024501.1 mouse_genomes_project 2 292674 297267 + MGP_CASTEiJ_P0052154 Acbd7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0007138.1 MGP_CASTEiJ_G0005868.1 mouse_genomes_project 2 130760071 130760970 + Gm14010 lincRNA lincRNA MGP_CASTEiJ_T0013081.1 MGP_CASTEiJ_G0011244.1 mouse_genomes_project 2 31425922 31426189 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004004.1 MGP_CASTEiJ_G0003551.1 mouse_genomes_project 2 157065927 157067524 - Dnmt3bos antisense antisense MGP_CASTEiJ_T0055847.1 MGP_CASTEiJ_G0025314.1 mouse_genomes_project 2 91110530 91111407 - MGP_CASTEiJ_P0055847 Olfr1272 protein_coding protein_coding MGP_CASTEiJ_T0007109.1 MGP_CASTEiJ_G0005846.1 mouse_genomes_project 2 116952715 116969406 - 4930528P14Rik lincRNA lincRNA MGP_CASTEiJ_T0102203.1 MGP_CASTEiJ_G0038928.1 mouse_genomes_project 2 34571884 34572823 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0003870.1 MGP_CASTEiJ_G0003461.1 mouse_genomes_project 2 70015889 70094174 - Gad1os antisense antisense MGP_CASTEiJ_T0003871.1 MGP_CASTEiJ_G0003461.1 mouse_genomes_project 2 70016193 70017426 - Gad1os antisense antisense MGP_CASTEiJ_T0052152.1 MGP_CASTEiJ_G0024500.1 mouse_genomes_project 2 282754 287083 - MGP_CASTEiJ_P0052152 Rpp38 protein_coding protein_coding MGP_CASTEiJ_T0003899.1 MGP_CASTEiJ_G0003478.1 mouse_genomes_project 2 77456073 77475657 + Gm13944 antisense antisense MGP_CASTEiJ_T0003900.1 MGP_CASTEiJ_G0003478.1 mouse_genomes_project 2 77456081 77476002 + Gm13944 antisense antisense MGP_CASTEiJ_T0100913.1 MGP_CASTEiJ_G0037826.1 mouse_genomes_project 2 147307621 147307859 - Snord17 snoRNA snoRNA MGP_CASTEiJ_T0003851.1 MGP_CASTEiJ_G0003445.1 mouse_genomes_project 2 59340917 59377524 + Gm13571 antisense antisense MGP_CASTEiJ_T0003852.1 MGP_CASTEiJ_G0003445.1 mouse_genomes_project 2 59359396 59370161 + Gm13571 antisense antisense MGP_CASTEiJ_T0102239.1 MGP_CASTEiJ_G0038964.1 mouse_genomes_project 2 88542892 88543784 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0058279.1 MGP_CASTEiJ_G0025862.1 mouse_genomes_project 2 156315029 156363591 + MGP_CASTEiJ_P0058279 Ttll9 protein_coding protein_coding MGP_CASTEiJ_T0058280.1 MGP_CASTEiJ_G0025862.1 mouse_genomes_project 2 156315050 156359437 + MGP_CASTEiJ_P0058280 Ttll9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058281.1 MGP_CASTEiJ_G0025862.1 mouse_genomes_project 2 156315050 156359488 + MGP_CASTEiJ_P0058281 Ttll9 protein_coding protein_coding MGP_CASTEiJ_T0058282.1 MGP_CASTEiJ_G0025862.1 mouse_genomes_project 2 156315050 156359444 + MGP_CASTEiJ_P0058282 Ttll9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058283.1 MGP_CASTEiJ_G0025862.1 mouse_genomes_project 2 156315055 156363222 + MGP_CASTEiJ_P0058283 Ttll9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058284.1 MGP_CASTEiJ_G0025862.1 mouse_genomes_project 2 156327418 156363591 + MGP_CASTEiJ_P0058284 Ttll9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058285.1 MGP_CASTEiJ_G0025862.1 mouse_genomes_project 2 156328675 156340650 + MGP_CASTEiJ_P0058285 Ttll9 protein_coding protein_coding MGP_CASTEiJ_T0058286.1 MGP_CASTEiJ_G0025862.1 mouse_genomes_project 2 156345731 156355645 + Ttll9 protein_coding retained_intron MGP_CASTEiJ_T0058287.1 MGP_CASTEiJ_G0025862.1 mouse_genomes_project 2 156359046 156364719 + Ttll9 protein_coding retained_intron MGP_CASTEiJ_T0007099.1 MGP_CASTEiJ_G0005836.1 mouse_genomes_project 2 107374257 107376260 - Gm29053 lincRNA lincRNA MGP_CASTEiJ_T0013168.1 MGP_CASTEiJ_G0011331.1 mouse_genomes_project 2 65805088 65805973 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057167.1 MGP_CASTEiJ_G0025584.1 mouse_genomes_project 2 124085411 124099453 + MGP_CASTEiJ_P0057167 protein_coding protein_coding MGP_CASTEiJ_T0058401.1 MGP_CASTEiJ_G0025894.1 mouse_genomes_project 2 157952799 158065443 + MGP_CASTEiJ_P0058401 Cbfa2t2 protein_coding protein_coding MGP_CASTEiJ_T0058402.1 MGP_CASTEiJ_G0025894.1 mouse_genomes_project 2 157952802 158050913 + MGP_CASTEiJ_P0058402 Cbfa2t2 protein_coding protein_coding MGP_CASTEiJ_T0058403.1 MGP_CASTEiJ_G0025894.1 mouse_genomes_project 2 157952813 158065443 + MGP_CASTEiJ_P0058403 Cbfa2t2 protein_coding protein_coding MGP_CASTEiJ_T0058404.1 MGP_CASTEiJ_G0025894.1 mouse_genomes_project 2 157952853 158042309 + MGP_CASTEiJ_P0058404 Cbfa2t2 protein_coding protein_coding MGP_CASTEiJ_T0058405.1 MGP_CASTEiJ_G0025894.1 mouse_genomes_project 2 157953160 158029229 + MGP_CASTEiJ_P0058405 Cbfa2t2 protein_coding protein_coding MGP_CASTEiJ_T0058406.1 MGP_CASTEiJ_G0025894.1 mouse_genomes_project 2 158024880 158065936 + MGP_CASTEiJ_P0058406 Cbfa2t2 protein_coding protein_coding MGP_CASTEiJ_T0058407.1 MGP_CASTEiJ_G0025894.1 mouse_genomes_project 2 158040446 158042537 + Cbfa2t2 protein_coding retained_intron MGP_CASTEiJ_T0058408.1 MGP_CASTEiJ_G0025894.1 mouse_genomes_project 2 158048479 158055903 + Cbfa2t2 protein_coding retained_intron MGP_CASTEiJ_T0058409.1 MGP_CASTEiJ_G0025894.1 mouse_genomes_project 2 158055342 158061076 + Cbfa2t2 protein_coding retained_intron MGP_CASTEiJ_T0013096.1 MGP_CASTEiJ_G0011259.1 mouse_genomes_project 2 37058776 37059365 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003965.1 MGP_CASTEiJ_G0003523.1 mouse_genomes_project 2 134820715 134828603 + AV099323 antisense antisense MGP_CASTEiJ_T0052222.1 MGP_CASTEiJ_G0024512.1 mouse_genomes_project 2 1910962 1945518 + MGP_CASTEiJ_P0052222 Sephs1 protein_coding protein_coding MGP_CASTEiJ_T0052223.1 MGP_CASTEiJ_G0024512.1 mouse_genomes_project 2 1911639 1943100 + MGP_CASTEiJ_P0052223 Sephs1 protein_coding protein_coding MGP_CASTEiJ_T0052224.1 MGP_CASTEiJ_G0024512.1 mouse_genomes_project 2 1913451 1918513 + Sephs1 protein_coding processed_transcript MGP_CASTEiJ_T0052225.1 MGP_CASTEiJ_G0024512.1 mouse_genomes_project 2 1913778 1940495 + Sephs1 protein_coding processed_transcript MGP_CASTEiJ_T0007180.1 MGP_CASTEiJ_G0005901.1 mouse_genomes_project 2 158661879 158664165 - 2310005A03Rik lincRNA lincRNA MGP_CASTEiJ_T0013323.1 MGP_CASTEiJ_G0011486.1 mouse_genomes_project 2 123715919 123716879 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058226.1 MGP_CASTEiJ_G0025839.1 mouse_genomes_project 2 155717280 155747646 + MGP_CASTEiJ_P0058226 6820408C15Rik protein_coding protein_coding MGP_CASTEiJ_T0058227.1 MGP_CASTEiJ_G0025839.1 mouse_genomes_project 2 155728916 155747645 + MGP_CASTEiJ_P0058227 6820408C15Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058228.1 MGP_CASTEiJ_G0025839.1 mouse_genomes_project 2 155728943 155742909 + MGP_CASTEiJ_P0058228 6820408C15Rik protein_coding protein_coding MGP_CASTEiJ_T0058229.1 MGP_CASTEiJ_G0025839.1 mouse_genomes_project 2 155740695 155747653 + MGP_CASTEiJ_P0058229 6820408C15Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0101576.1 MGP_CASTEiJ_G0038449.1 mouse_genomes_project 2 153524710 153525391 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101577.1 MGP_CASTEiJ_G0038449.1 mouse_genomes_project 2 153524943 153525695 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0017171.1 MGP_CASTEiJ_G0014807.1 mouse_genomes_project 2 173284518 173286484 + Gm14261 processed_transcript processed_transcript MGP_CASTEiJ_T0099659.1 MGP_CASTEiJ_G0036572.1 mouse_genomes_project 2 131707632 131707783 - Gm25703 snRNA snRNA MGP_CASTEiJ_T0007001.1 MGP_CASTEiJ_G0005755.1 mouse_genomes_project 2 35265258 35266136 - Gm13434 lincRNA lincRNA MGP_CASTEiJ_T0059520.1 MGP_CASTEiJ_G0026137.1 mouse_genomes_project 2 178747557 178750249 + MGP_CASTEiJ_P0059520 1700010B08Rik protein_coding protein_coding MGP_CASTEiJ_T0058834.1 MGP_CASTEiJ_G0025969.1 mouse_genomes_project 2 161991729 162041678 - MGP_CASTEiJ_P0058834 D630003M21Rik protein_coding protein_coding MGP_CASTEiJ_T0058835.1 MGP_CASTEiJ_G0025969.1 mouse_genomes_project 2 161995330 162041678 - MGP_CASTEiJ_P0058835 D630003M21Rik protein_coding protein_coding MGP_CASTEiJ_T0058836.1 MGP_CASTEiJ_G0025969.1 mouse_genomes_project 2 162004936 162041678 - MGP_CASTEiJ_P0058836 D630003M21Rik protein_coding protein_coding MGP_CASTEiJ_T0013354.1 MGP_CASTEiJ_G0011517.1 mouse_genomes_project 2 135838705 135839313 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098750.1 MGP_CASTEiJ_G0035681.1 mouse_genomes_project 2 50308632 50308762 - Gm23505 scaRNA scaRNA MGP_CASTEiJ_T0055018.1 MGP_CASTEiJ_G0024996.1 mouse_genomes_project 2 69094024 69113967 + MGP_CASTEiJ_P0055018 Bbs5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055019.1 MGP_CASTEiJ_G0024996.1 mouse_genomes_project 2 69094061 69114220 + MGP_CASTEiJ_P0055019 Bbs5 protein_coding protein_coding MGP_CASTEiJ_T0055020.1 MGP_CASTEiJ_G0024996.1 mouse_genomes_project 2 69094069 69114220 + MGP_CASTEiJ_P0055020 Bbs5 protein_coding protein_coding MGP_CASTEiJ_T0055021.1 MGP_CASTEiJ_G0024996.1 mouse_genomes_project 2 69094106 69101075 + Bbs5 protein_coding retained_intron MGP_CASTEiJ_T0055022.1 MGP_CASTEiJ_G0024996.1 mouse_genomes_project 2 69094116 69099921 + Bbs5 protein_coding retained_intron MGP_CASTEiJ_T0055023.1 MGP_CASTEiJ_G0024996.1 mouse_genomes_project 2 69102241 69111684 + Bbs5 protein_coding retained_intron MGP_CASTEiJ_T0055024.1 MGP_CASTEiJ_G0024996.1 mouse_genomes_project 2 69103900 69114220 + MGP_CASTEiJ_P0055024 Bbs5 protein_coding protein_coding MGP_CASTEiJ_T0052634.1 MGP_CASTEiJ_G0024579.1 mouse_genomes_project 2 16912895 16914734 + MGP_CASTEiJ_P0052634 Ptf1a protein_coding protein_coding MGP_CASTEiJ_T0017050.1 MGP_CASTEiJ_G0014751.1 mouse_genomes_project 2 88583368 88589900 - processed_transcript processed_transcript MGP_CASTEiJ_T0007163.1 MGP_CASTEiJ_G0005889.1 mouse_genomes_project 2 151143275 151186350 - 9030622O22Rik lincRNA lincRNA MGP_CASTEiJ_T0007164.1 MGP_CASTEiJ_G0005889.1 mouse_genomes_project 2 151182890 151254050 - 9030622O22Rik lincRNA lincRNA MGP_CASTEiJ_T0007165.1 MGP_CASTEiJ_G0005889.1 mouse_genomes_project 2 151183044 151252118 - 9030622O22Rik lincRNA lincRNA MGP_CASTEiJ_T0058362.1 MGP_CASTEiJ_G0025880.1 mouse_genomes_project 2 157344952 157357359 + MGP_CASTEiJ_P0058362 Bpifb6 protein_coding protein_coding MGP_CASTEiJ_T0058363.1 MGP_CASTEiJ_G0025880.1 mouse_genomes_project 2 157344959 157351484 + MGP_CASTEiJ_P0058363 Bpifb6 protein_coding protein_coding MGP_CASTEiJ_T0013353.1 MGP_CASTEiJ_G0011516.1 mouse_genomes_project 2 135670637 135671003 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056068.1 MGP_CASTEiJ_G0025345.1 mouse_genomes_project 2 92868867 92870748 - MGP_CASTEiJ_P0056068 Mdk protein_coding protein_coding MGP_CASTEiJ_T0056069.1 MGP_CASTEiJ_G0025345.1 mouse_genomes_project 2 92868890 92871371 - MGP_CASTEiJ_P0056069 Mdk protein_coding protein_coding MGP_CASTEiJ_T0056070.1 MGP_CASTEiJ_G0025345.1 mouse_genomes_project 2 92868890 92870840 - MGP_CASTEiJ_P0056070 Mdk protein_coding protein_coding MGP_CASTEiJ_T0056071.1 MGP_CASTEiJ_G0025345.1 mouse_genomes_project 2 92869028 92870759 - MGP_CASTEiJ_P0056071 Mdk protein_coding protein_coding MGP_CASTEiJ_T0059158.1 MGP_CASTEiJ_G0026058.1 mouse_genomes_project 2 169071487 169091552 - MGP_CASTEiJ_P0059158 Zfp335 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059159.1 MGP_CASTEiJ_G0026058.1 mouse_genomes_project 2 169071487 169091552 - MGP_CASTEiJ_P0059159 Zfp335 protein_coding protein_coding MGP_CASTEiJ_T0059160.1 MGP_CASTEiJ_G0026058.1 mouse_genomes_project 2 169071489 169091396 - MGP_CASTEiJ_P0059160 Zfp335 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059161.1 MGP_CASTEiJ_G0026058.1 mouse_genomes_project 2 169082169 169087463 - MGP_CASTEiJ_P0059161 Zfp335 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055635.1 MGP_CASTEiJ_G0025138.1 mouse_genomes_project 2 86326674 86327613 + MGP_CASTEiJ_P0055635 Olfr1025-ps1 protein_coding protein_coding MGP_CASTEiJ_T0055636.1 MGP_CASTEiJ_G0025138.1 mouse_genomes_project 2 86326674 86327595 + MGP_CASTEiJ_P0055636 Olfr1025-ps1 protein_coding protein_coding MGP_CASTEiJ_T0004009.1 MGP_CASTEiJ_G0003555.1 mouse_genomes_project 2 159191933 159194574 + Gssos1 antisense antisense MGP_CASTEiJ_T0053310.1 MGP_CASTEiJ_G0024701.1 mouse_genomes_project 2 24583737 24595995 - MGP_CASTEiJ_P0053310 Rexo4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0053311.1 MGP_CASTEiJ_G0024701.1 mouse_genomes_project 2 24584779 24596025 - MGP_CASTEiJ_P0053311 Rexo4 protein_coding protein_coding MGP_CASTEiJ_T0053312.1 MGP_CASTEiJ_G0024701.1 mouse_genomes_project 2 24585196 24586514 - Rexo4 protein_coding processed_transcript MGP_CASTEiJ_T0053313.1 MGP_CASTEiJ_G0024701.1 mouse_genomes_project 2 24586527 24596024 - Rexo4 protein_coding processed_transcript MGP_CASTEiJ_T0053314.1 MGP_CASTEiJ_G0024701.1 mouse_genomes_project 2 24588477 24591999 - Rexo4 protein_coding processed_transcript MGP_CASTEiJ_T0053315.1 MGP_CASTEiJ_G0024701.1 mouse_genomes_project 2 24594623 24596070 - Rexo4 protein_coding processed_transcript MGP_CASTEiJ_T0099626.1 MGP_CASTEiJ_G0036539.1 mouse_genomes_project 2 25193698 25193824 - Gm25541 snRNA snRNA MGP_CASTEiJ_T0013228.1 MGP_CASTEiJ_G0011391.1 mouse_genomes_project 2 87722314 87723776 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058219.1 MGP_CASTEiJ_G0025835.1 mouse_genomes_project 2 155636115 155643606 - MGP_CASTEiJ_P0058219 Trib3 protein_coding protein_coding MGP_CASTEiJ_T0058220.1 MGP_CASTEiJ_G0025835.1 mouse_genomes_project 2 155638442 155643562 - Trib3 protein_coding processed_transcript MGP_CASTEiJ_T0058221.1 MGP_CASTEiJ_G0025835.1 mouse_genomes_project 2 155642537 155643544 - Trib3 protein_coding retained_intron MGP_CASTEiJ_T0054368.1 MGP_CASTEiJ_G0024879.1 mouse_genomes_project 2 35176515 35177441 + MGP_CASTEiJ_P0054368 protein_coding protein_coding MGP_CASTEiJ_T0007114.1 MGP_CASTEiJ_G0005849.1 mouse_genomes_project 2 117745167 117746409 - 2700033N17Rik lincRNA lincRNA MGP_CASTEiJ_T0007201.1 MGP_CASTEiJ_G0005920.1 mouse_genomes_project 2 169832912 169833238 - Gm28163 lincRNA lincRNA MGP_CASTEiJ_T0058414.1 MGP_CASTEiJ_G0025896.1 mouse_genomes_project 2 158073033 158075732 + 1700003F12Rik protein_coding retained_intron MGP_CASTEiJ_T0058416.1 MGP_CASTEiJ_G0025896.1 mouse_genomes_project 2 158074812 158075917 + MGP_CASTEiJ_P0058416 1700003F12Rik protein_coding protein_coding MGP_CASTEiJ_T0058417.1 MGP_CASTEiJ_G0025896.1 mouse_genomes_project 2 158074851 158075917 + MGP_CASTEiJ_P0058417 1700003F12Rik protein_coding protein_coding MGP_CASTEiJ_T0007220.1 MGP_CASTEiJ_G0005935.1 mouse_genomes_project 2 172603903 172609420 - Gm14235 lincRNA lincRNA MGP_CASTEiJ_T0010209.1 MGP_CASTEiJ_G0008397.1 mouse_genomes_project 2 183201656 183201760 + Mir133a-2 miRNA miRNA MGP_CASTEiJ_T0058130.1 MGP_CASTEiJ_G0025813.1 mouse_genomes_project 2 154119384 154139541 + Gins1 protein_coding processed_transcript MGP_CASTEiJ_T0058131.1 MGP_CASTEiJ_G0025813.1 mouse_genomes_project 2 154123682 154144903 + MGP_CASTEiJ_P0058131 Gins1 protein_coding protein_coding MGP_CASTEiJ_T0058132.1 MGP_CASTEiJ_G0025813.1 mouse_genomes_project 2 154123705 154139735 + Gins1 protein_coding processed_transcript MGP_CASTEiJ_T0058133.1 MGP_CASTEiJ_G0025813.1 mouse_genomes_project 2 154126995 154141160 + Gins1 protein_coding processed_transcript MGP_CASTEiJ_T0011186.1 MGP_CASTEiJ_G0009374.1 mouse_genomes_project 2 148559756 148560081 - Gm22390 misc_RNA misc_RNA MGP_CASTEiJ_T0013285.1 MGP_CASTEiJ_G0011448.1 mouse_genomes_project 2 106331399 106331820 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013422.1 MGP_CASTEiJ_G0011585.1 mouse_genomes_project 2 160584172 160584409 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102205.1 MGP_CASTEiJ_G0038930.1 mouse_genomes_project 2 34602858 34603311 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0054612.1 MGP_CASTEiJ_G0024924.1 mouse_genomes_project 2 49913244 49931674 - MGP_CASTEiJ_P0054612 Rnd3 protein_coding protein_coding MGP_CASTEiJ_T0054613.1 MGP_CASTEiJ_G0024924.1 mouse_genomes_project 2 49918062 49931889 - Rnd3 protein_coding retained_intron MGP_CASTEiJ_T0013055.1 MGP_CASTEiJ_G0011218.1 mouse_genomes_project 2 20185026 20185361 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010206.1 MGP_CASTEiJ_G0008394.1 mouse_genomes_project 2 182969419 182969488 - Mir7005 miRNA miRNA MGP_CASTEiJ_T0013165.1 MGP_CASTEiJ_G0011328.1 mouse_genomes_project 2 64478441 64479650 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010119.1 MGP_CASTEiJ_G0008307.1 mouse_genomes_project 2 30340563 30340673 + Mir199b miRNA miRNA MGP_CASTEiJ_T0055584.1 MGP_CASTEiJ_G0025109.1 mouse_genomes_project 2 85282794 85291092 + Prg3 protein_coding processed_transcript MGP_CASTEiJ_T0055585.1 MGP_CASTEiJ_G0025109.1 mouse_genomes_project 2 85282794 85291191 + MGP_CASTEiJ_P0055585 Prg3 protein_coding protein_coding MGP_CASTEiJ_T0057504.1 MGP_CASTEiJ_G0025668.1 mouse_genomes_project 2 131758350 131764844 - MGP_CASTEiJ_P0057504 Il1b protein_coding protein_coding MGP_CASTEiJ_T0057505.1 MGP_CASTEiJ_G0025668.1 mouse_genomes_project 2 131758902 131761143 - Il1b protein_coding processed_transcript MGP_CASTEiJ_T0057506.1 MGP_CASTEiJ_G0025668.1 mouse_genomes_project 2 131763511 131764844 - Il1b protein_coding retained_intron MGP_CASTEiJ_T0013118.1 MGP_CASTEiJ_G0011281.1 mouse_genomes_project 2 46952552 46952802 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059654.1 MGP_CASTEiJ_G0026168.1 mouse_genomes_project 2 183127786 183137355 - MGP_CASTEiJ_P0059654 Gata5 protein_coding protein_coding MGP_CASTEiJ_T0056659.1 MGP_CASTEiJ_G0025491.1 mouse_genomes_project 2 118980217 118991874 + Fam98b protein_coding retained_intron MGP_CASTEiJ_T0056660.1 MGP_CASTEiJ_G0025491.1 mouse_genomes_project 2 118980217 119005184 + MGP_CASTEiJ_P0056660 Fam98b protein_coding protein_coding MGP_CASTEiJ_T0056661.1 MGP_CASTEiJ_G0025491.1 mouse_genomes_project 2 118990413 118991872 + Fam98b protein_coding processed_transcript MGP_CASTEiJ_T0003943.1 MGP_CASTEiJ_G0003506.1 mouse_genomes_project 2 123252878 123255187 - Gm14978 antisense antisense MGP_CASTEiJ_T0056471.1 MGP_CASTEiJ_G0025419.1 mouse_genomes_project 2 108049889 108243974 + MGP_CASTEiJ_P0056471 Mpped2 protein_coding protein_coding MGP_CASTEiJ_T0056472.1 MGP_CASTEiJ_G0025419.1 mouse_genomes_project 2 108051841 108110448 + MGP_CASTEiJ_P0056472 Mpped2 protein_coding protein_coding MGP_CASTEiJ_T0056473.1 MGP_CASTEiJ_G0025419.1 mouse_genomes_project 2 108052224 108242824 + MGP_CASTEiJ_P0056473 Mpped2 protein_coding protein_coding MGP_CASTEiJ_T0056474.1 MGP_CASTEiJ_G0025419.1 mouse_genomes_project 2 108052246 108152238 + Mpped2 protein_coding processed_transcript MGP_CASTEiJ_T0056475.1 MGP_CASTEiJ_G0025419.1 mouse_genomes_project 2 108052477 108242653 + MGP_CASTEiJ_P0056475 Mpped2 protein_coding protein_coding MGP_CASTEiJ_T0056476.1 MGP_CASTEiJ_G0025419.1 mouse_genomes_project 2 108094625 108152335 + Mpped2 protein_coding processed_transcript MGP_CASTEiJ_T0006972.1 MGP_CASTEiJ_G0005734.1 mouse_genomes_project 2 22863932 22871039 - AA543186 lincRNA lincRNA MGP_CASTEiJ_T0059002.1 MGP_CASTEiJ_G0026006.1 mouse_genomes_project 2 167743908 167819584 + Pkig protein_coding retained_intron MGP_CASTEiJ_T0059003.1 MGP_CASTEiJ_G0026006.1 mouse_genomes_project 2 167743908 167821981 + MGP_CASTEiJ_P0059003 Pkig protein_coding protein_coding MGP_CASTEiJ_T0059004.1 MGP_CASTEiJ_G0026006.1 mouse_genomes_project 2 167743921 167821977 + MGP_CASTEiJ_P0059004 Pkig protein_coding protein_coding MGP_CASTEiJ_T0059005.1 MGP_CASTEiJ_G0026006.1 mouse_genomes_project 2 167743937 167821513 + MGP_CASTEiJ_P0059005 Pkig protein_coding protein_coding MGP_CASTEiJ_T0059006.1 MGP_CASTEiJ_G0026006.1 mouse_genomes_project 2 167743980 167816840 + MGP_CASTEiJ_P0059006 Pkig protein_coding protein_coding MGP_CASTEiJ_T0059007.1 MGP_CASTEiJ_G0026006.1 mouse_genomes_project 2 167743999 167821616 + MGP_CASTEiJ_P0059007 Pkig protein_coding protein_coding MGP_CASTEiJ_T0059008.1 MGP_CASTEiJ_G0026006.1 mouse_genomes_project 2 167744002 167821343 + MGP_CASTEiJ_P0059008 Pkig protein_coding protein_coding MGP_CASTEiJ_T0059009.1 MGP_CASTEiJ_G0026006.1 mouse_genomes_project 2 167746981 167821298 + MGP_CASTEiJ_P0059009 Pkig protein_coding protein_coding MGP_CASTEiJ_T0059010.1 MGP_CASTEiJ_G0026006.1 mouse_genomes_project 2 167790469 167821975 + MGP_CASTEiJ_P0059010 Pkig protein_coding protein_coding MGP_CASTEiJ_T0055648.1 MGP_CASTEiJ_G0025150.1 mouse_genomes_project 2 86642785 86643733 - MGP_CASTEiJ_P0055648 Olfr1045 protein_coding protein_coding MGP_CASTEiJ_T0055837.1 MGP_CASTEiJ_G0025306.1 mouse_genomes_project 2 90830980 90831968 + MGP_CASTEiJ_P0055837 Olfr1263 protein_coding protein_coding MGP_CASTEiJ_T0056538.1 MGP_CASTEiJ_G0025440.1 mouse_genomes_project 2 112709014 112709925 - MGP_CASTEiJ_P0056538 Olfr1277 protein_coding protein_coding MGP_CASTEiJ_T0058810.1 MGP_CASTEiJ_G0025964.1 mouse_genomes_project 2 161523816 161683771 + MGP_CASTEiJ_P0058810 Ctnnbl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058811.1 MGP_CASTEiJ_G0025964.1 mouse_genomes_project 2 161523834 161684285 + MGP_CASTEiJ_P0058811 Ctnnbl1 protein_coding protein_coding MGP_CASTEiJ_T0058812.1 MGP_CASTEiJ_G0025964.1 mouse_genomes_project 2 161578368 161598382 + Ctnnbl1 protein_coding processed_transcript MGP_CASTEiJ_T0058813.1 MGP_CASTEiJ_G0025964.1 mouse_genomes_project 2 161579784 161609462 + Ctnnbl1 protein_coding processed_transcript MGP_CASTEiJ_T0058814.1 MGP_CASTEiJ_G0025964.1 mouse_genomes_project 2 161579817 161629132 + Ctnnbl1 protein_coding processed_transcript MGP_CASTEiJ_T0059695.1 MGP_CASTEiJ_G0026178.1 mouse_genomes_project 2 183605778 183608270 - MGP_CASTEiJ_P0059695 Bhlhe23 protein_coding protein_coding MGP_CASTEiJ_T0013337.1 MGP_CASTEiJ_G0011500.1 mouse_genomes_project 2 132147314 132147822 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058317.1 MGP_CASTEiJ_G0025870.1 mouse_genomes_project 2 156602522 156631307 + MGP_CASTEiJ_P0058317 Pofut1 protein_coding protein_coding MGP_CASTEiJ_T0058318.1 MGP_CASTEiJ_G0025870.1 mouse_genomes_project 2 156602530 156626963 + MGP_CASTEiJ_P0058318 Pofut1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058319.1 MGP_CASTEiJ_G0025870.1 mouse_genomes_project 2 156602530 156626963 + MGP_CASTEiJ_P0058319 Pofut1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058320.1 MGP_CASTEiJ_G0025870.1 mouse_genomes_project 2 156602540 156623016 + MGP_CASTEiJ_P0058320 Pofut1 protein_coding protein_coding MGP_CASTEiJ_T0058321.1 MGP_CASTEiJ_G0025870.1 mouse_genomes_project 2 156602558 156611836 + Pofut1 protein_coding retained_intron MGP_CASTEiJ_T0058322.1 MGP_CASTEiJ_G0025870.1 mouse_genomes_project 2 156602567 156627540 + MGP_CASTEiJ_P0058322 Pofut1 protein_coding protein_coding MGP_CASTEiJ_T0058323.1 MGP_CASTEiJ_G0025870.1 mouse_genomes_project 2 156618526 156628323 + MGP_CASTEiJ_P0058323 Pofut1 protein_coding protein_coding MGP_CASTEiJ_T0058324.1 MGP_CASTEiJ_G0025870.1 mouse_genomes_project 2 156618644 156629100 + MGP_CASTEiJ_P0058324 Pofut1 protein_coding protein_coding MGP_CASTEiJ_T0057880.1 MGP_CASTEiJ_G0025748.1 mouse_genomes_project 2 143027543 143029026 + MGP_CASTEiJ_P0057880 Gm17374 protein_coding protein_coding MGP_CASTEiJ_T0055317.1 MGP_CASTEiJ_G0025058.1 mouse_genomes_project 2 76303683 76317496 + MGP_CASTEiJ_P0055317 Rbm45 protein_coding protein_coding MGP_CASTEiJ_T0055318.1 MGP_CASTEiJ_G0025058.1 mouse_genomes_project 2 76303744 76317498 + MGP_CASTEiJ_P0055318 Rbm45 protein_coding unknown_likely_coding MGP_CASTEiJ_T0013373.1 MGP_CASTEiJ_G0011536.1 mouse_genomes_project 2 147300996 147301304 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059062.1 MGP_CASTEiJ_G0026029.1 mouse_genomes_project 2 168602794 168607607 + Sys1 protein_coding processed_transcript MGP_CASTEiJ_T0059063.1 MGP_CASTEiJ_G0026029.1 mouse_genomes_project 2 168602806 168612184 + MGP_CASTEiJ_P0059063 Sys1 protein_coding protein_coding MGP_CASTEiJ_T0059064.1 MGP_CASTEiJ_G0026029.1 mouse_genomes_project 2 168602918 168607979 + Sys1 protein_coding processed_transcript MGP_CASTEiJ_T0059066.1 MGP_CASTEiJ_G0026029.1 mouse_genomes_project 2 168607641 168612180 + MGP_CASTEiJ_P0059066 Sys1 protein_coding protein_coding MGP_CASTEiJ_T0059067.1 MGP_CASTEiJ_G0026029.1 mouse_genomes_project 2 168607670 168621081 + MGP_CASTEiJ_P0059067 Sys1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059068.1 MGP_CASTEiJ_G0026029.1 mouse_genomes_project 2 168607723 168625937 + MGP_CASTEiJ_P0059068 Sys1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059069.1 MGP_CASTEiJ_G0026029.1 mouse_genomes_project 2 168607979 168621081 + MGP_CASTEiJ_P0059069 Sys1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055709.1 MGP_CASTEiJ_G0025202.1 mouse_genomes_project 2 88090609 88207488 - MGP_CASTEiJ_P0055709 protein_coding protein_coding MGP_CASTEiJ_T0055711.1 MGP_CASTEiJ_G0025202.1 mouse_genomes_project 2 88091174 88207488 - protein_coding processed_transcript MGP_CASTEiJ_T0013124.1 MGP_CASTEiJ_G0011287.1 mouse_genomes_project 2 49176571 49176850 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056977.1 MGP_CASTEiJ_G0025555.1 mouse_genomes_project 2 122644959 122661792 - MGP_CASTEiJ_P0056977 Cdan1 protein_coding protein_coding MGP_CASTEiJ_T0056978.1 MGP_CASTEiJ_G0025555.1 mouse_genomes_project 2 122645315 122661793 - MGP_CASTEiJ_P0056978 Cdan1 protein_coding protein_coding MGP_CASTEiJ_T0056979.1 MGP_CASTEiJ_G0025555.1 mouse_genomes_project 2 122646977 122769660 - Cdan1 protein_coding processed_transcript MGP_CASTEiJ_T0056980.1 MGP_CASTEiJ_G0025555.1 mouse_genomes_project 2 122647400 122649325 - Cdan1 protein_coding processed_transcript MGP_CASTEiJ_T0056981.1 MGP_CASTEiJ_G0025555.1 mouse_genomes_project 2 122652671 122654730 - Cdan1 protein_coding retained_intron MGP_CASTEiJ_T0056982.1 MGP_CASTEiJ_G0025555.1 mouse_genomes_project 2 122655885 122658252 - Cdan1 protein_coding retained_intron MGP_CASTEiJ_T0056983.1 MGP_CASTEiJ_G0025555.1 mouse_genomes_project 2 122658192 122658913 - Cdan1 protein_coding retained_intron MGP_CASTEiJ_T0056984.1 MGP_CASTEiJ_G0025555.1 mouse_genomes_project 2 122658902 122661781 - Cdan1 protein_coding processed_transcript MGP_CASTEiJ_T0056985.1 MGP_CASTEiJ_G0025555.1 mouse_genomes_project 2 122660216 122661765 - Cdan1 protein_coding processed_transcript MGP_CASTEiJ_T0007031.1 MGP_CASTEiJ_G0005782.1 mouse_genomes_project 2 66490796 66501889 + Gm1322 lincRNA lincRNA MGP_CASTEiJ_T0056802.1 MGP_CASTEiJ_G0025527.1 mouse_genomes_project 2 121403058 121444271 + MGP_CASTEiJ_P0056802 Chp1 protein_coding protein_coding MGP_CASTEiJ_T0056803.1 MGP_CASTEiJ_G0025527.1 mouse_genomes_project 2 121403086 121444261 + MGP_CASTEiJ_P0056803 Chp1 protein_coding protein_coding MGP_CASTEiJ_T0056804.1 MGP_CASTEiJ_G0025527.1 mouse_genomes_project 2 121403177 121429164 + Chp1 protein_coding retained_intron MGP_CASTEiJ_T0056805.1 MGP_CASTEiJ_G0025527.1 mouse_genomes_project 2 121423910 121442652 + Chp1 protein_coding retained_intron MGP_CASTEiJ_T0058274.1 MGP_CASTEiJ_G0025860.1 mouse_genomes_project 2 156281134 156282445 - MGP_CASTEiJ_P0058274 Foxs1 protein_coding protein_coding MGP_CASTEiJ_T0013320.1 MGP_CASTEiJ_G0011483.1 mouse_genomes_project 2 122995595 122996363 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056634.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117525561 117743353 - MGP_CASTEiJ_P0056634 Meis2 protein_coding protein_coding MGP_CASTEiJ_T0056635.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117525561 117744152 - MGP_CASTEiJ_P0056635 Meis2 protein_coding protein_coding MGP_CASTEiJ_T0056636.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117525561 117743353 - MGP_CASTEiJ_P0056636 Meis2 protein_coding protein_coding MGP_CASTEiJ_T0056637.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117525561 117744152 - MGP_CASTEiJ_P0056637 Meis2 protein_coding protein_coding MGP_CASTEiJ_T0056638.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117525642 117743027 - MGP_CASTEiJ_P0056638 Meis2 protein_coding protein_coding MGP_CASTEiJ_T0056639.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117525799 117742814 - MGP_CASTEiJ_P0056639 Meis2 protein_coding protein_coding MGP_CASTEiJ_T0056640.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117526402 117535449 - Meis2 protein_coding processed_transcript MGP_CASTEiJ_T0056641.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117526725 117531363 - Meis2 protein_coding retained_intron MGP_CASTEiJ_T0056642.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117526771 117717224 - Meis2 protein_coding processed_transcript MGP_CASTEiJ_T0056643.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117526816 117535360 - Meis2 protein_coding processed_transcript MGP_CASTEiJ_T0056644.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117526957 117535449 - Meis2 protein_coding processed_transcript MGP_CASTEiJ_T0056645.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117527370 117535468 - Meis2 protein_coding retained_intron MGP_CASTEiJ_T0056646.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117529376 117535452 - Meis2 protein_coding processed_transcript MGP_CASTEiJ_T0056647.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117587411 117724855 - Meis2 protein_coding processed_transcript MGP_CASTEiJ_T0056648.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117663070 117740829 - Meis2 protein_coding retained_intron MGP_CASTEiJ_T0056649.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117713955 117724387 - Meis2 protein_coding retained_intron MGP_CASTEiJ_T0056650.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117724258 117741886 - Meis2 protein_coding processed_transcript MGP_CASTEiJ_T0056651.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117724258 117740999 - Meis2 protein_coding processed_transcript MGP_CASTEiJ_T0056652.1 MGP_CASTEiJ_G0025488.1 mouse_genomes_project 2 117724281 117734944 - Meis2 protein_coding retained_intron MGP_CASTEiJ_T0007245.1 MGP_CASTEiJ_G0005957.1 mouse_genomes_project 2 179951227 179965438 - Gm14618 lincRNA lincRNA MGP_CASTEiJ_T0055715.1 MGP_CASTEiJ_G0025207.1 mouse_genomes_project 2 88231005 88231938 - MGP_CASTEiJ_P0055715 Olfr1135 protein_coding protein_coding MGP_CASTEiJ_T0013412.1 MGP_CASTEiJ_G0011575.1 mouse_genomes_project 2 159143779 159144250 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054335.1 MGP_CASTEiJ_G0024857.1 mouse_genomes_project 2 34376895 34394294 - MGP_CASTEiJ_P0054335 Rbm18 protein_coding protein_coding MGP_CASTEiJ_T0054336.1 MGP_CASTEiJ_G0024857.1 mouse_genomes_project 2 34378416 34396622 - MGP_CASTEiJ_P0054336 Rbm18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054337.1 MGP_CASTEiJ_G0024857.1 mouse_genomes_project 2 34378591 34396661 - MGP_CASTEiJ_P0054337 Rbm18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054338.1 MGP_CASTEiJ_G0024857.1 mouse_genomes_project 2 34386239 34396657 - Rbm18 protein_coding retained_intron MGP_CASTEiJ_T0055472.1 MGP_CASTEiJ_G0025083.1 mouse_genomes_project 2 82266880 82498196 + MGP_CASTEiJ_P0055472 Zfp804a protein_coding protein_coding MGP_CASTEiJ_T0055473.1 MGP_CASTEiJ_G0025083.1 mouse_genomes_project 2 82460449 82490154 + Zfp804a protein_coding processed_transcript MGP_CASTEiJ_T0058947.1 MGP_CASTEiJ_G0025992.1 mouse_genomes_project 2 166943077 166974926 + L3mbtl1 protein_coding retained_intron MGP_CASTEiJ_T0058948.1 MGP_CASTEiJ_G0025992.1 mouse_genomes_project 2 166943079 166977359 + MGP_CASTEiJ_P0058948 L3mbtl1 protein_coding protein_coding MGP_CASTEiJ_T0058949.1 MGP_CASTEiJ_G0025992.1 mouse_genomes_project 2 166943080 166948574 + L3mbtl1 protein_coding processed_transcript MGP_CASTEiJ_T0058950.1 MGP_CASTEiJ_G0025992.1 mouse_genomes_project 2 166943080 166948648 + MGP_CASTEiJ_P0058950 L3mbtl1 protein_coding protein_coding MGP_CASTEiJ_T0058951.1 MGP_CASTEiJ_G0025992.1 mouse_genomes_project 2 166943105 166946932 + L3mbtl1 protein_coding processed_transcript MGP_CASTEiJ_T0058952.1 MGP_CASTEiJ_G0025992.1 mouse_genomes_project 2 166947691 166949265 + L3mbtl1 protein_coding processed_transcript MGP_CASTEiJ_T0058953.1 MGP_CASTEiJ_G0025992.1 mouse_genomes_project 2 166947691 166949265 + MGP_CASTEiJ_P0058953 L3mbtl1 protein_coding protein_coding MGP_CASTEiJ_T0013050.1 MGP_CASTEiJ_G0011213.1 mouse_genomes_project 2 17130113 17130218 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003858.1 MGP_CASTEiJ_G0003449.1 mouse_genomes_project 2 61922515 61924100 + Gm13569 antisense antisense MGP_CASTEiJ_T0013298.1 MGP_CASTEiJ_G0011461.1 mouse_genomes_project 2 111886086 111888320 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011159.1 MGP_CASTEiJ_G0009347.1 mouse_genomes_project 2 18063862 18063951 + Gm27446 misc_RNA misc_RNA MGP_CASTEiJ_T0007045.1 MGP_CASTEiJ_G0005793.1 mouse_genomes_project 2 73949487 73950037 + Gm28640 lincRNA lincRNA MGP_CASTEiJ_T0055792.1 MGP_CASTEiJ_G0025277.1 mouse_genomes_project 2 90105123 90106065 - MGP_CASTEiJ_P0055792 Olfr1231 protein_coding protein_coding MGP_CASTEiJ_T0010179.1 MGP_CASTEiJ_G0008367.1 mouse_genomes_project 2 141668484 141668563 + Mir1952 miRNA miRNA MGP_CASTEiJ_T0013300.1 MGP_CASTEiJ_G0011463.1 mouse_genomes_project 2 113109071 113110010 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056744.1 MGP_CASTEiJ_G0025511.1 mouse_genomes_project 2 120849442 120854412 + MGP_CASTEiJ_P0056744 Rpusd2 protein_coding protein_coding MGP_CASTEiJ_T0059760.1 MGP_CASTEiJ_G0026189.1 mouse_genomes_project 2 184063877 184071480 - MGP_CASTEiJ_P0059760 Srms protein_coding protein_coding MGP_CASTEiJ_T0007213.1 MGP_CASTEiJ_G0005930.1 mouse_genomes_project 2 172105376 172144615 + A530013C23Rik lincRNA lincRNA MGP_CASTEiJ_T0007214.1 MGP_CASTEiJ_G0005930.1 mouse_genomes_project 2 172105380 172112002 + A530013C23Rik lincRNA lincRNA MGP_CASTEiJ_T0056542.1 MGP_CASTEiJ_G0025444.1 mouse_genomes_project 2 112863581 112921993 + MGP_CASTEiJ_P0056542 protein_coding protein_coding MGP_CASTEiJ_T0007055.1 MGP_CASTEiJ_G0005801.1 mouse_genomes_project 2 75022324 75053710 - A330043C09Rik lincRNA lincRNA MGP_CASTEiJ_T0099657.1 MGP_CASTEiJ_G0036570.1 mouse_genomes_project 2 128876866 128877015 - Gm23753 snRNA snRNA MGP_CASTEiJ_T0058541.1 MGP_CASTEiJ_G0025925.1 mouse_genomes_project 2 159450861 159458142 - MGP_CASTEiJ_P0058541 Fam83c protein_coding protein_coding MGP_CASTEiJ_T0102228.1 MGP_CASTEiJ_G0038953.1 mouse_genomes_project 2 86927125 86928013 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100865.1 MGP_CASTEiJ_G0037778.1 mouse_genomes_project 2 30900742 30900870 + Gm24165 snoRNA snoRNA MGP_CASTEiJ_T0055815.1 MGP_CASTEiJ_G0025293.1 mouse_genomes_project 2 90549639 90550673 - MGP_CASTEiJ_P0055815 Olfr1252 protein_coding protein_coding MGP_CASTEiJ_T0013225.1 MGP_CASTEiJ_G0011388.1 mouse_genomes_project 2 86761490 86764421 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003841.1 MGP_CASTEiJ_G0003438.1 mouse_genomes_project 2 37107844 37124324 + Nr6a1os antisense antisense MGP_CASTEiJ_T0003842.1 MGP_CASTEiJ_G0003438.1 mouse_genomes_project 2 37107925 37140059 + Nr6a1os antisense antisense MGP_CASTEiJ_T0055824.1 MGP_CASTEiJ_G0025300.1 mouse_genomes_project 2 90695522 90698836 + MGP_CASTEiJ_P0055824 Olfr1257 protein_coding protein_coding MGP_CASTEiJ_T0055825.1 MGP_CASTEiJ_G0025300.1 mouse_genomes_project 2 90697872 90698888 + MGP_CASTEiJ_P0055825 Olfr1257 protein_coding protein_coding MGP_CASTEiJ_T0013432.1 MGP_CASTEiJ_G0011595.1 mouse_genomes_project 2 166906322 166907012 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003771.1 MGP_CASTEiJ_G0003381.1 mouse_genomes_project 2 4004789 4008540 + Gm13389 antisense antisense MGP_CASTEiJ_T0013344.1 MGP_CASTEiJ_G0011507.1 mouse_genomes_project 2 133822810 133823089 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011180.1 MGP_CASTEiJ_G0009368.1 mouse_genomes_project 2 115849246 115849564 + Gm25103 misc_RNA misc_RNA MGP_CASTEiJ_T0013433.1 MGP_CASTEiJ_G0011596.1 mouse_genomes_project 2 168647388 168648114 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099674.1 MGP_CASTEiJ_G0036587.1 mouse_genomes_project 2 171104596 171104699 + Gm24477 snRNA snRNA MGP_CASTEiJ_T0102252.1 MGP_CASTEiJ_G0038977.1 mouse_genomes_project 2 142012184 142012413 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0058967.1 MGP_CASTEiJ_G0025997.1 mouse_genomes_project 2 167240884 167374425 + MGP_CASTEiJ_P0058967 Tox2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058968.1 MGP_CASTEiJ_G0025997.1 mouse_genomes_project 2 167240912 167367190 + MGP_CASTEiJ_P0058968 Tox2 protein_coding protein_coding MGP_CASTEiJ_T0058969.1 MGP_CASTEiJ_G0025997.1 mouse_genomes_project 2 167242339 167315549 + MGP_CASTEiJ_P0058969 Tox2 protein_coding protein_coding MGP_CASTEiJ_T0058970.1 MGP_CASTEiJ_G0025997.1 mouse_genomes_project 2 167263173 167366370 + MGP_CASTEiJ_P0058970 Tox2 protein_coding protein_coding MGP_CASTEiJ_T0058971.1 MGP_CASTEiJ_G0025997.1 mouse_genomes_project 2 167263265 167366170 + MGP_CASTEiJ_P0058971 Tox2 protein_coding protein_coding MGP_CASTEiJ_T0058972.1 MGP_CASTEiJ_G0025997.1 mouse_genomes_project 2 167363432 167366170 + MGP_CASTEiJ_P0058972 Tox2 protein_coding protein_coding MGP_CASTEiJ_T0057005.1 MGP_CASTEiJ_G0025559.1 mouse_genomes_project 2 122950690 122957384 + MGP_CASTEiJ_P0057005 Ccndbp1 protein_coding protein_coding MGP_CASTEiJ_T0057006.1 MGP_CASTEiJ_G0025559.1 mouse_genomes_project 2 122950725 122955200 + Ccndbp1 protein_coding processed_transcript MGP_CASTEiJ_T0057007.1 MGP_CASTEiJ_G0025559.1 mouse_genomes_project 2 122950730 122958764 + MGP_CASTEiJ_P0057007 Ccndbp1 protein_coding protein_coding MGP_CASTEiJ_T0057008.1 MGP_CASTEiJ_G0025559.1 mouse_genomes_project 2 122950768 122959148 + MGP_CASTEiJ_P0057008 Ccndbp1 protein_coding protein_coding MGP_CASTEiJ_T0057009.1 MGP_CASTEiJ_G0025559.1 mouse_genomes_project 2 122950962 122952830 + Ccndbp1 protein_coding retained_intron MGP_CASTEiJ_T0057010.1 MGP_CASTEiJ_G0025559.1 mouse_genomes_project 2 122953306 122954008 + Ccndbp1 protein_coding retained_intron MGP_CASTEiJ_T0057011.1 MGP_CASTEiJ_G0025559.1 mouse_genomes_project 2 122954742 122955212 + Ccndbp1 protein_coding processed_transcript MGP_CASTEiJ_T0054942.1 MGP_CASTEiJ_G0024978.1 mouse_genomes_project 2 65305434 65355455 - MGP_CASTEiJ_P0054942 Galnt3 protein_coding protein_coding MGP_CASTEiJ_T0054943.1 MGP_CASTEiJ_G0024978.1 mouse_genomes_project 2 65306756 65319292 - Galnt3 protein_coding processed_transcript MGP_CASTEiJ_T0054944.1 MGP_CASTEiJ_G0024978.1 mouse_genomes_project 2 65315287 65318137 - Galnt3 protein_coding processed_transcript MGP_CASTEiJ_T0054945.1 MGP_CASTEiJ_G0024978.1 mouse_genomes_project 2 65319704 65326490 - Galnt3 protein_coding processed_transcript MGP_CASTEiJ_T0007228.1 MGP_CASTEiJ_G0005942.1 mouse_genomes_project 2 173827813 173830569 + 9430093N23Rik lincRNA lincRNA MGP_CASTEiJ_T0003840.1 MGP_CASTEiJ_G0003437.1 mouse_genomes_project 2 36989373 36997267 + Nr5a1os antisense antisense MGP_CASTEiJ_T0098754.1 MGP_CASTEiJ_G0035685.1 mouse_genomes_project 2 160677217 160677353 - Gm27653 scaRNA scaRNA MGP_CASTEiJ_T0003951.1 MGP_CASTEiJ_G0003514.1 mouse_genomes_project 2 131541497 131566701 - AI847159 antisense antisense MGP_CASTEiJ_T0003952.1 MGP_CASTEiJ_G0003514.1 mouse_genomes_project 2 131564218 131566701 - AI847159 antisense antisense MGP_CASTEiJ_T0003953.1 MGP_CASTEiJ_G0003514.1 mouse_genomes_project 2 131564222 131564612 - AI847159 antisense antisense MGP_CASTEiJ_T0003954.1 MGP_CASTEiJ_G0003514.1 mouse_genomes_project 2 131564266 131566736 - AI847159 antisense antisense MGP_CASTEiJ_T0006943.1 MGP_CASTEiJ_G0005713.1 mouse_genomes_project 2 3593846 3600464 + Gm13391 lincRNA lincRNA MGP_CASTEiJ_T0006944.1 MGP_CASTEiJ_G0005713.1 mouse_genomes_project 2 3594116 3595024 + Gm13391 lincRNA lincRNA MGP_CASTEiJ_T0053859.1 MGP_CASTEiJ_G0024787.1 mouse_genomes_project 2 29786649 29793002 - MGP_CASTEiJ_P0053859 Qrfp protein_coding protein_coding MGP_CASTEiJ_T0013383.1 MGP_CASTEiJ_G0011546.1 mouse_genomes_project 2 150476612 150477589 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052929.1 MGP_CASTEiJ_G0024631.1 mouse_genomes_project 2 22802561 22803933 - Ssna1 protein_coding processed_transcript MGP_CASTEiJ_T0052930.1 MGP_CASTEiJ_G0024631.1 mouse_genomes_project 2 22802561 22803939 - MGP_CASTEiJ_P0052930 Ssna1 protein_coding protein_coding MGP_CASTEiJ_T0052931.1 MGP_CASTEiJ_G0024631.1 mouse_genomes_project 2 22802608 22803961 - Ssna1 protein_coding processed_transcript MGP_CASTEiJ_T0052932.1 MGP_CASTEiJ_G0024631.1 mouse_genomes_project 2 22803228 22803927 - Ssna1 protein_coding processed_transcript MGP_CASTEiJ_T0058157.1 MGP_CASTEiJ_G0025819.1 mouse_genomes_project 2 154800481 154819625 + MGP_CASTEiJ_P0058157 Fkbp1a protein_coding protein_coding MGP_CASTEiJ_T0058158.1 MGP_CASTEiJ_G0025819.1 mouse_genomes_project 2 154800498 154818643 + Fkbp1a protein_coding processed_transcript MGP_CASTEiJ_T0058159.1 MGP_CASTEiJ_G0025819.1 mouse_genomes_project 2 154800507 154817555 + Fkbp1a protein_coding processed_transcript MGP_CASTEiJ_T0058160.1 MGP_CASTEiJ_G0025819.1 mouse_genomes_project 2 154800507 154802582 + Fkbp1a protein_coding retained_intron MGP_CASTEiJ_T0058161.1 MGP_CASTEiJ_G0025819.1 mouse_genomes_project 2 154800528 154817763 + Fkbp1a protein_coding retained_intron MGP_CASTEiJ_T0058162.1 MGP_CASTEiJ_G0025819.1 mouse_genomes_project 2 154800607 154815377 + Fkbp1a protein_coding processed_transcript MGP_CASTEiJ_T0058163.1 MGP_CASTEiJ_G0025819.1 mouse_genomes_project 2 154800615 154821282 + MGP_CASTEiJ_P0058163 Fkbp1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0058164.1 MGP_CASTEiJ_G0025819.1 mouse_genomes_project 2 154800644 154818588 + Fkbp1a protein_coding processed_transcript MGP_CASTEiJ_T0058165.1 MGP_CASTEiJ_G0025819.1 mouse_genomes_project 2 154803314 154818643 + Fkbp1a protein_coding processed_transcript MGP_CASTEiJ_T0017114.1 MGP_CASTEiJ_G0014780.1 mouse_genomes_project 2 130514536 130765557 - Gm14005 processed_transcript processed_transcript MGP_CASTEiJ_T0017115.1 MGP_CASTEiJ_G0014780.1 mouse_genomes_project 2 130625352 130765746 - Gm14005 processed_transcript processed_transcript MGP_CASTEiJ_T0017116.1 MGP_CASTEiJ_G0014780.1 mouse_genomes_project 2 130646606 130765772 - Gm14005 processed_transcript processed_transcript MGP_CASTEiJ_T0017117.1 MGP_CASTEiJ_G0014780.1 mouse_genomes_project 2 130646782 130765587 - Gm14005 processed_transcript processed_transcript MGP_CASTEiJ_T0017118.1 MGP_CASTEiJ_G0014780.1 mouse_genomes_project 2 130677089 130765657 - Gm14005 processed_transcript processed_transcript MGP_CASTEiJ_T0017119.1 MGP_CASTEiJ_G0014780.1 mouse_genomes_project 2 130705319 130765603 - Gm14005 processed_transcript processed_transcript MGP_CASTEiJ_T0017120.1 MGP_CASTEiJ_G0014780.1 mouse_genomes_project 2 130705320 130765308 - Gm14005 processed_transcript processed_transcript MGP_CASTEiJ_T0057466.1 MGP_CASTEiJ_G0025655.1 mouse_genomes_project 2 131051908 131159992 + MGP_CASTEiJ_P0057466 Mertk protein_coding protein_coding MGP_CASTEiJ_T0057467.1 MGP_CASTEiJ_G0025655.1 mouse_genomes_project 2 131127056 131159773 + Mertk protein_coding processed_transcript MGP_CASTEiJ_T0003940.1 MGP_CASTEiJ_G0003503.1 mouse_genomes_project 2 120641106 120645279 - Gm14091 antisense antisense MGP_CASTEiJ_T0007108.1 MGP_CASTEiJ_G0005845.1 mouse_genomes_project 2 116756749 116758983 + Gm28493 lincRNA lincRNA MGP_CASTEiJ_T0010055.1 MGP_CASTEiJ_G0008243.1 mouse_genomes_project 2 7720384 7720505 + Mir669f miRNA miRNA MGP_CASTEiJ_T0054826.1 MGP_CASTEiJ_G0024961.1 mouse_genomes_project 2 60646803 60729868 + MGP_CASTEiJ_P0054826 Tank protein_coding protein_coding MGP_CASTEiJ_T0054827.1 MGP_CASTEiJ_G0024961.1 mouse_genomes_project 2 60646804 60729868 + MGP_CASTEiJ_P0054827 Tank protein_coding protein_coding MGP_CASTEiJ_T0054828.1 MGP_CASTEiJ_G0024961.1 mouse_genomes_project 2 60646829 60719089 + Tank protein_coding processed_transcript MGP_CASTEiJ_T0054829.1 MGP_CASTEiJ_G0024961.1 mouse_genomes_project 2 60646829 60729787 + Tank protein_coding processed_transcript MGP_CASTEiJ_T0054830.1 MGP_CASTEiJ_G0024961.1 mouse_genomes_project 2 60662931 60729868 + MGP_CASTEiJ_P0054830 Tank protein_coding protein_coding MGP_CASTEiJ_T0054831.1 MGP_CASTEiJ_G0024961.1 mouse_genomes_project 2 60662951 60729868 + MGP_CASTEiJ_P0054831 Tank protein_coding protein_coding MGP_CASTEiJ_T0054832.1 MGP_CASTEiJ_G0024961.1 mouse_genomes_project 2 60662990 60726837 + MGP_CASTEiJ_P0054832 Tank protein_coding protein_coding MGP_CASTEiJ_T0054833.1 MGP_CASTEiJ_G0024961.1 mouse_genomes_project 2 60663018 60684810 + Tank protein_coding processed_transcript MGP_CASTEiJ_T0054834.1 MGP_CASTEiJ_G0024961.1 mouse_genomes_project 2 60663019 60729787 + Tank protein_coding processed_transcript MGP_CASTEiJ_T0054835.1 MGP_CASTEiJ_G0024961.1 mouse_genomes_project 2 60701081 60721209 + Tank protein_coding processed_transcript MGP_CASTEiJ_T0054836.1 MGP_CASTEiJ_G0024961.1 mouse_genomes_project 2 60719012 60725015 + Tank protein_coding processed_transcript MGP_CASTEiJ_T0052987.1 MGP_CASTEiJ_G0024641.1 mouse_genomes_project 2 22945272 22953412 + Npdc1 protein_coding processed_transcript MGP_CASTEiJ_T0052988.1 MGP_CASTEiJ_G0024641.1 mouse_genomes_project 2 22946398 22955272 + Npdc1 protein_coding processed_transcript MGP_CASTEiJ_T0052989.1 MGP_CASTEiJ_G0024641.1 mouse_genomes_project 2 22948984 22956582 + MGP_CASTEiJ_P0052989 Npdc1 protein_coding protein_coding MGP_CASTEiJ_T0052990.1 MGP_CASTEiJ_G0024641.1 mouse_genomes_project 2 22949020 22953943 + Npdc1 protein_coding processed_transcript MGP_CASTEiJ_T0052991.1 MGP_CASTEiJ_G0024641.1 mouse_genomes_project 2 22949082 22954941 + MGP_CASTEiJ_P0052991 Npdc1 protein_coding protein_coding MGP_CASTEiJ_T0052992.1 MGP_CASTEiJ_G0024641.1 mouse_genomes_project 2 22949084 22956582 + MGP_CASTEiJ_P0052992 Npdc1 protein_coding protein_coding MGP_CASTEiJ_T0052993.1 MGP_CASTEiJ_G0024641.1 mouse_genomes_project 2 22949107 22955409 + MGP_CASTEiJ_P0052993 Npdc1 protein_coding protein_coding MGP_CASTEiJ_T0052994.1 MGP_CASTEiJ_G0024641.1 mouse_genomes_project 2 22949152 22954206 + Npdc1 protein_coding processed_transcript MGP_CASTEiJ_T0052995.1 MGP_CASTEiJ_G0024641.1 mouse_genomes_project 2 22949361 22955097 + Npdc1 protein_coding processed_transcript MGP_CASTEiJ_T0052996.1 MGP_CASTEiJ_G0024641.1 mouse_genomes_project 2 22950002 22956579 + Npdc1 protein_coding processed_transcript MGP_CASTEiJ_T0052997.1 MGP_CASTEiJ_G0024641.1 mouse_genomes_project 2 22953378 22956582 + MGP_CASTEiJ_P0052997 Npdc1 protein_coding protein_coding MGP_CASTEiJ_T0052998.1 MGP_CASTEiJ_G0024641.1 mouse_genomes_project 2 22954376 22956344 + Npdc1 protein_coding processed_transcript MGP_CASTEiJ_T0052999.1 MGP_CASTEiJ_G0024641.1 mouse_genomes_project 2 22954785 22956576 + Npdc1 protein_coding processed_transcript MGP_CASTEiJ_T0053000.1 MGP_CASTEiJ_G0024641.1 mouse_genomes_project 2 22955959 22956579 + Npdc1 protein_coding processed_transcript MGP_CASTEiJ_T0003843.1 MGP_CASTEiJ_G0003439.1 mouse_genomes_project 2 37307788 37309334 - Gm13496 antisense antisense MGP_CASTEiJ_T0053504.1 MGP_CASTEiJ_G0024739.1 mouse_genomes_project 2 27552489 27579949 - MGP_CASTEiJ_P0053504 Trub2 protein_coding protein_coding MGP_CASTEiJ_T0053507.1 MGP_CASTEiJ_G0024739.1 mouse_genomes_project 2 27567299 27579961 - MGP_CASTEiJ_P0053507 Trub2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053508.1 MGP_CASTEiJ_G0024739.1 mouse_genomes_project 2 27568700 27580803 - MGP_CASTEiJ_P0053508 Trub2 protein_coding protein_coding MGP_CASTEiJ_T0053509.1 MGP_CASTEiJ_G0024739.1 mouse_genomes_project 2 27570008 27579935 - MGP_CASTEiJ_P0053509 Trub2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053510.1 MGP_CASTEiJ_G0024739.1 mouse_genomes_project 2 27570077 27579923 - MGP_CASTEiJ_P0053510 Trub2 protein_coding protein_coding MGP_CASTEiJ_T0053511.1 MGP_CASTEiJ_G0024739.1 mouse_genomes_project 2 27570932 27579972 - MGP_CASTEiJ_P0053511 Trub2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053512.1 MGP_CASTEiJ_G0024739.1 mouse_genomes_project 2 27571091 27574655 - Trub2 protein_coding retained_intron MGP_CASTEiJ_T0053513.1 MGP_CASTEiJ_G0024739.1 mouse_genomes_project 2 27571552 27574506 - Trub2 protein_coding retained_intron MGP_CASTEiJ_T0053514.1 MGP_CASTEiJ_G0024739.1 mouse_genomes_project 2 27575531 27579931 - Trub2 protein_coding retained_intron MGP_CASTEiJ_T0053515.1 MGP_CASTEiJ_G0024739.1 mouse_genomes_project 2 27577232 27579934 - Trub2 protein_coding retained_intron MGP_CASTEiJ_T0007073.1 MGP_CASTEiJ_G0005817.1 mouse_genomes_project 2 93003250 93007632 - 2900072N19Rik lincRNA lincRNA MGP_CASTEiJ_T0013365.1 MGP_CASTEiJ_G0011528.1 mouse_genomes_project 2 144058208 144058986 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058737.1 MGP_CASTEiJ_G0025951.1 mouse_genomes_project 2 160634040 160683128 - MGP_CASTEiJ_P0058737 Ndrg3 protein_coding protein_coding MGP_CASTEiJ_T0058738.1 MGP_CASTEiJ_G0025951.1 mouse_genomes_project 2 160637855 160641637 - Ndrg3 protein_coding processed_transcript MGP_CASTEiJ_T0058739.1 MGP_CASTEiJ_G0025951.1 mouse_genomes_project 2 160640937 160804720 - MGP_CASTEiJ_P0058739 Ndrg3 protein_coding protein_coding MGP_CASTEiJ_T0058740.1 MGP_CASTEiJ_G0025951.1 mouse_genomes_project 2 160656373 160804685 - Ndrg3 protein_coding processed_transcript MGP_CASTEiJ_T0058741.1 MGP_CASTEiJ_G0025951.1 mouse_genomes_project 2 160660554 160804612 - Ndrg3 protein_coding processed_transcript MGP_CASTEiJ_T0058742.1 MGP_CASTEiJ_G0025951.1 mouse_genomes_project 2 160669515 160804732 - Ndrg3 protein_coding retained_intron MGP_CASTEiJ_T0058743.1 MGP_CASTEiJ_G0025951.1 mouse_genomes_project 2 160683095 160804681 - Ndrg3 protein_coding processed_transcript MGP_CASTEiJ_T0013307.1 MGP_CASTEiJ_G0011470.1 mouse_genomes_project 2 113889957 113890258 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057366.1 MGP_CASTEiJ_G0025630.1 mouse_genomes_project 2 129413261 129417959 - MGP_CASTEiJ_P0057366 Itpripl1 protein_coding protein_coding MGP_CASTEiJ_T0057367.1 MGP_CASTEiJ_G0025630.1 mouse_genomes_project 2 129414925 129417822 - MGP_CASTEiJ_P0057367 Itpripl1 protein_coding protein_coding MGP_CASTEiJ_T0057368.1 MGP_CASTEiJ_G0025630.1 mouse_genomes_project 2 129415045 129417107 - MGP_CASTEiJ_P0057368 Itpripl1 protein_coding protein_coding MGP_CASTEiJ_T0056178.1 MGP_CASTEiJ_G0025364.1 mouse_genomes_project 2 94735195 94906232 - MGP_CASTEiJ_P0056178 Ext2 protein_coding protein_coding MGP_CASTEiJ_T0056179.1 MGP_CASTEiJ_G0025364.1 mouse_genomes_project 2 94773577 94906251 - MGP_CASTEiJ_P0056179 Ext2 protein_coding protein_coding MGP_CASTEiJ_T0056180.1 MGP_CASTEiJ_G0025364.1 mouse_genomes_project 2 94774059 94783016 - Ext2 protein_coding retained_intron MGP_CASTEiJ_T0056181.1 MGP_CASTEiJ_G0025364.1 mouse_genomes_project 2 94774073 94906228 - MGP_CASTEiJ_P0056181 Ext2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056182.1 MGP_CASTEiJ_G0025364.1 mouse_genomes_project 2 94780867 94785192 - MGP_CASTEiJ_P0056182 Ext2 protein_coding protein_coding MGP_CASTEiJ_T0056183.1 MGP_CASTEiJ_G0025364.1 mouse_genomes_project 2 94781450 94782415 - MGP_CASTEiJ_P0056183 Ext2 protein_coding protein_coding MGP_CASTEiJ_T0056184.1 MGP_CASTEiJ_G0025364.1 mouse_genomes_project 2 94795059 94906232 - Ext2 protein_coding processed_transcript MGP_CASTEiJ_T0056185.1 MGP_CASTEiJ_G0025364.1 mouse_genomes_project 2 94844052 94878827 - Ext2 protein_coding retained_intron MGP_CASTEiJ_T0056186.1 MGP_CASTEiJ_G0025364.1 mouse_genomes_project 2 94888896 94906248 - MGP_CASTEiJ_P0056186 Ext2 protein_coding protein_coding MGP_CASTEiJ_T0056187.1 MGP_CASTEiJ_G0025364.1 mouse_genomes_project 2 94895904 94906228 - Ext2 protein_coding retained_intron MGP_CASTEiJ_T0056188.1 MGP_CASTEiJ_G0025364.1 mouse_genomes_project 2 94896329 94906231 - MGP_CASTEiJ_P0056188 Ext2 protein_coding protein_coding MGP_CASTEiJ_T0056189.1 MGP_CASTEiJ_G0025364.1 mouse_genomes_project 2 94896714 94906236 - Ext2 protein_coding processed_transcript MGP_CASTEiJ_T0055798.1 MGP_CASTEiJ_G0025281.1 mouse_genomes_project 2 90231861 90232809 - MGP_CASTEiJ_P0055798 Olfr1238 protein_coding protein_coding MGP_CASTEiJ_T0059363.1 MGP_CASTEiJ_G0026092.1 mouse_genomes_project 2 172015889 172040378 - MGP_CASTEiJ_P0059363 Ube2v1 protein_coding protein_coding MGP_CASTEiJ_T0059364.1 MGP_CASTEiJ_G0026092.1 mouse_genomes_project 2 172024168 172040381 - Ube2v1 protein_coding retained_intron MGP_CASTEiJ_T0057661.1 MGP_CASTEiJ_G0025701.1 mouse_genomes_project 2 133623388 133643458 + MGP_CASTEiJ_P0057661 Hspa12b protein_coding protein_coding MGP_CASTEiJ_T0057662.1 MGP_CASTEiJ_G0025701.1 mouse_genomes_project 2 133623550 133633193 + MGP_CASTEiJ_P0057662 Hspa12b protein_coding protein_coding MGP_CASTEiJ_T0057663.1 MGP_CASTEiJ_G0025701.1 mouse_genomes_project 2 133623602 133642364 + MGP_CASTEiJ_P0057663 Hspa12b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013442.1 MGP_CASTEiJ_G0011605.1 mouse_genomes_project 2 171924756 171925033 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055712.1 MGP_CASTEiJ_G0025204.1 mouse_genomes_project 2 88174826 88175750 + MGP_CASTEiJ_P0055712 protein_coding protein_coding MGP_CASTEiJ_T0057360.1 MGP_CASTEiJ_G0025629.1 mouse_genomes_project 2 129377919 129408078 - MGP_CASTEiJ_P0057360 Ncaph protein_coding protein_coding MGP_CASTEiJ_T0057361.1 MGP_CASTEiJ_G0025629.1 mouse_genomes_project 2 129377937 129388150 - Ncaph protein_coding retained_intron MGP_CASTEiJ_T0057362.1 MGP_CASTEiJ_G0025629.1 mouse_genomes_project 2 129378060 129408026 - MGP_CASTEiJ_P0057362 Ncaph protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057363.1 MGP_CASTEiJ_G0025629.1 mouse_genomes_project 2 129382083 129390344 - Ncaph protein_coding retained_intron MGP_CASTEiJ_T0057364.1 MGP_CASTEiJ_G0025629.1 mouse_genomes_project 2 129395048 129396196 - Ncaph protein_coding retained_intron MGP_CASTEiJ_T0057365.1 MGP_CASTEiJ_G0025629.1 mouse_genomes_project 2 129401805 129408021 - Ncaph protein_coding processed_transcript MGP_CASTEiJ_T0052401.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9001758 9034898 + MGP_CASTEiJ_P0052401 Il15ra protein_coding protein_coding MGP_CASTEiJ_T0052402.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9001797 9034207 + Il15ra protein_coding processed_transcript MGP_CASTEiJ_T0052403.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9001817 9034544 + MGP_CASTEiJ_P0052403 Il15ra protein_coding protein_coding MGP_CASTEiJ_T0052404.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9001837 9034550 + MGP_CASTEiJ_P0052404 Il15ra protein_coding protein_coding MGP_CASTEiJ_T0052405.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9001843 9017899 + Il15ra protein_coding retained_intron MGP_CASTEiJ_T0052406.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9001855 9034550 + Il15ra protein_coding processed_transcript MGP_CASTEiJ_T0052407.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9001911 9034564 + MGP_CASTEiJ_P0052407 Il15ra protein_coding protein_coding MGP_CASTEiJ_T0052408.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9002020 9033983 + Il15ra protein_coding processed_transcript MGP_CASTEiJ_T0052409.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9002180 9019436 + MGP_CASTEiJ_P0052409 Il15ra protein_coding protein_coding MGP_CASTEiJ_T0052410.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9002227 9019722 + Il15ra protein_coding retained_intron MGP_CASTEiJ_T0052411.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9002245 9034568 + MGP_CASTEiJ_P0052411 Il15ra protein_coding protein_coding MGP_CASTEiJ_T0052412.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9002278 9034898 + MGP_CASTEiJ_P0052412 Il15ra protein_coding protein_coding MGP_CASTEiJ_T0052413.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9002278 9033983 + MGP_CASTEiJ_P0052413 Il15ra protein_coding protein_coding MGP_CASTEiJ_T0052414.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9002279 9033983 + MGP_CASTEiJ_P0052414 Il15ra protein_coding protein_coding MGP_CASTEiJ_T0052415.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9002316 9033831 + MGP_CASTEiJ_P0052415 Il15ra protein_coding protein_coding MGP_CASTEiJ_T0052416.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9017659 9019616 + Il15ra protein_coding retained_intron MGP_CASTEiJ_T0052417.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9017763 9033999 + MGP_CASTEiJ_P0052417 Il15ra protein_coding protein_coding MGP_CASTEiJ_T0052418.1 MGP_CASTEiJ_G0024543.1 mouse_genomes_project 2 9022550 9034550 + Il15ra protein_coding retained_intron MGP_CASTEiJ_T0059560.1 MGP_CASTEiJ_G0026145.1 mouse_genomes_project 2 179514266 179521453 + MGP_CASTEiJ_P0059560 Tubb1 protein_coding protein_coding MGP_CASTEiJ_T0011173.1 MGP_CASTEiJ_G0009361.1 mouse_genomes_project 2 71993733 71994041 + Zakit misc_RNA misc_RNA MGP_CASTEiJ_T0004020.1 MGP_CASTEiJ_G0003566.1 mouse_genomes_project 2 166383951 166387081 + Ptprtos antisense antisense MGP_CASTEiJ_T0053260.1 MGP_CASTEiJ_G0024690.1 mouse_genomes_project 2 24215596 24226862 - Agpat2 protein_coding processed_transcript MGP_CASTEiJ_T0053261.1 MGP_CASTEiJ_G0024690.1 mouse_genomes_project 2 24215596 24226983 - MGP_CASTEiJ_P0053261 Agpat2 protein_coding protein_coding MGP_CASTEiJ_T0053262.1 MGP_CASTEiJ_G0024690.1 mouse_genomes_project 2 24217030 24227068 - Agpat2 protein_coding processed_transcript MGP_CASTEiJ_T0053263.1 MGP_CASTEiJ_G0024690.1 mouse_genomes_project 2 24218645 24226367 - Agpat2 protein_coding processed_transcript MGP_CASTEiJ_T0053264.1 MGP_CASTEiJ_G0024690.1 mouse_genomes_project 2 24218968 24226577 - MGP_CASTEiJ_P0053264 Agpat2 protein_coding protein_coding MGP_CASTEiJ_T0010066.1 MGP_CASTEiJ_G0008254.1 mouse_genomes_project 2 7740626 7740996 + miRNA miRNA MGP_CASTEiJ_T0054086.1 MGP_CASTEiJ_G0024820.1 mouse_genomes_project 2 30843294 30851972 - MGP_CASTEiJ_P0054086 Cfap157 protein_coding protein_coding MGP_CASTEiJ_T0054087.1 MGP_CASTEiJ_G0024820.1 mouse_genomes_project 2 30844128 30845064 - Cfap157 protein_coding retained_intron MGP_CASTEiJ_T0056306.1 MGP_CASTEiJ_G0025387.1 mouse_genomes_project 2 104242187 104261067 + MGP_CASTEiJ_P0056306 Apip protein_coding protein_coding MGP_CASTEiJ_T0056307.1 MGP_CASTEiJ_G0025387.1 mouse_genomes_project 2 104242207 104261054 + Apip protein_coding processed_transcript MGP_CASTEiJ_T0056308.1 MGP_CASTEiJ_G0025387.1 mouse_genomes_project 2 104251470 104260213 + Apip protein_coding processed_transcript MGP_CASTEiJ_T0056309.1 MGP_CASTEiJ_G0025387.1 mouse_genomes_project 2 104260258 104261061 + Apip protein_coding processed_transcript MGP_CASTEiJ_T0007029.1 MGP_CASTEiJ_G0005780.1 mouse_genomes_project 2 65355777 65407604 + Gm28638 lincRNA lincRNA MGP_CASTEiJ_T0053086.1 MGP_CASTEiJ_G0024657.1 mouse_genomes_project 2 23176216 23178162 - MGP_CASTEiJ_P0053086 Tmem141 protein_coding protein_coding MGP_CASTEiJ_T0053087.1 MGP_CASTEiJ_G0024657.1 mouse_genomes_project 2 23176216 23178142 - MGP_CASTEiJ_P0053087 Tmem141 protein_coding protein_coding MGP_CASTEiJ_T0053088.1 MGP_CASTEiJ_G0024657.1 mouse_genomes_project 2 23176253 23178120 - Tmem141 protein_coding processed_transcript MGP_CASTEiJ_T0053089.1 MGP_CASTEiJ_G0024657.1 mouse_genomes_project 2 23176485 23177937 - Tmem141 protein_coding processed_transcript MGP_CASTEiJ_T0053090.1 MGP_CASTEiJ_G0024657.1 mouse_genomes_project 2 23177203 23178128 - Tmem141 protein_coding processed_transcript MGP_CASTEiJ_T0053091.1 MGP_CASTEiJ_G0024657.1 mouse_genomes_project 2 23177203 23178125 - Tmem141 protein_coding processed_transcript MGP_CASTEiJ_T0053092.1 MGP_CASTEiJ_G0024657.1 mouse_genomes_project 2 23177650 23178064 - Tmem141 protein_coding processed_transcript MGP_CASTEiJ_T0054464.1 MGP_CASTEiJ_G0024905.1 mouse_genomes_project 2 37316416 37326361 + Arpc5l protein_coding processed_transcript MGP_CASTEiJ_T0054465.1 MGP_CASTEiJ_G0024905.1 mouse_genomes_project 2 37319329 37326912 + MGP_CASTEiJ_P0054465 Arpc5l protein_coding protein_coding MGP_CASTEiJ_T0054466.1 MGP_CASTEiJ_G0024905.1 mouse_genomes_project 2 37319394 37324934 + Arpc5l protein_coding processed_transcript MGP_CASTEiJ_T0054467.1 MGP_CASTEiJ_G0024905.1 mouse_genomes_project 2 37319410 37326428 + MGP_CASTEiJ_P0054467 Arpc5l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054468.1 MGP_CASTEiJ_G0024905.1 mouse_genomes_project 2 37321271 37326912 + Arpc5l protein_coding processed_transcript MGP_CASTEiJ_T0057399.1 MGP_CASTEiJ_G0025639.1 mouse_genomes_project 2 129715480 129726472 + MGP_CASTEiJ_P0057399 Gpat2 protein_coding protein_coding MGP_CASTEiJ_T0057907.1 MGP_CASTEiJ_G0025753.1 mouse_genomes_project 2 145617379 145907633 - MGP_CASTEiJ_P0057907 Kif16b protein_coding protein_coding MGP_CASTEiJ_T0057908.1 MGP_CASTEiJ_G0025753.1 mouse_genomes_project 2 145618615 145649483 - Kif16b protein_coding retained_intron MGP_CASTEiJ_T0057909.1 MGP_CASTEiJ_G0025753.1 mouse_genomes_project 2 145704929 145907473 - MGP_CASTEiJ_P0057909 Kif16b protein_coding unknown_likely_coding MGP_CASTEiJ_T0057910.1 MGP_CASTEiJ_G0025753.1 mouse_genomes_project 2 145708264 145907519 - MGP_CASTEiJ_P0057910 Kif16b protein_coding unknown_likely_coding MGP_CASTEiJ_T0052294.1 MGP_CASTEiJ_G0024526.1 mouse_genomes_project 2 3288871 3310655 - MGP_CASTEiJ_P0052294 Echdc3 protein_coding protein_coding MGP_CASTEiJ_T0052295.1 MGP_CASTEiJ_G0024526.1 mouse_genomes_project 2 3289916 3296690 - Echdc3 protein_coding processed_transcript MGP_CASTEiJ_T0052296.1 MGP_CASTEiJ_G0024526.1 mouse_genomes_project 2 3303667 3310601 - Echdc3 protein_coding retained_intron MGP_CASTEiJ_T0054844.1 MGP_CASTEiJ_G0024963.1 mouse_genomes_project 2 60893731 60895334 + Tbr1 protein_coding processed_transcript MGP_CASTEiJ_T0054845.1 MGP_CASTEiJ_G0024963.1 mouse_genomes_project 2 60895228 60904748 + MGP_CASTEiJ_P0054845 Tbr1 protein_coding protein_coding MGP_CASTEiJ_T0054846.1 MGP_CASTEiJ_G0024963.1 mouse_genomes_project 2 60897037 60903171 + MGP_CASTEiJ_P0054846 Tbr1 protein_coding protein_coding MGP_CASTEiJ_T0054847.1 MGP_CASTEiJ_G0024963.1 mouse_genomes_project 2 60897057 60902441 + Tbr1 protein_coding processed_transcript MGP_CASTEiJ_T0013215.1 MGP_CASTEiJ_G0011378.1 mouse_genomes_project 2 83672045 83672747 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054197.1 MGP_CASTEiJ_G0024836.1 mouse_genomes_project 2 32973972 32982185 + MGP_CASTEiJ_P0054197 Hspa5 protein_coding protein_coding MGP_CASTEiJ_T0054198.1 MGP_CASTEiJ_G0024836.1 mouse_genomes_project 2 32974092 32979284 + MGP_CASTEiJ_P0054198 Hspa5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054199.1 MGP_CASTEiJ_G0024836.1 mouse_genomes_project 2 32974097 32979350 + MGP_CASTEiJ_P0054199 Hspa5 protein_coding protein_coding MGP_CASTEiJ_T0054200.1 MGP_CASTEiJ_G0024836.1 mouse_genomes_project 2 32974101 32979284 + MGP_CASTEiJ_P0054200 Hspa5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054201.1 MGP_CASTEiJ_G0024836.1 mouse_genomes_project 2 32974101 32975310 + MGP_CASTEiJ_P0054201 Hspa5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054202.1 MGP_CASTEiJ_G0024836.1 mouse_genomes_project 2 32974583 32977004 + Hspa5 protein_coding retained_intron MGP_CASTEiJ_T0054203.1 MGP_CASTEiJ_G0024836.1 mouse_genomes_project 2 32976476 32977145 + Hspa5 protein_coding retained_intron MGP_CASTEiJ_T0054204.1 MGP_CASTEiJ_G0024836.1 mouse_genomes_project 2 32977658 32978434 + Hspa5 protein_coding retained_intron MGP_CASTEiJ_T0003991.1 MGP_CASTEiJ_G0003539.1 mouse_genomes_project 2 149365781 149373662 + A930019D19Rik antisense antisense MGP_CASTEiJ_T0013108.1 MGP_CASTEiJ_G0011271.1 mouse_genomes_project 2 38575113 38576464 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013155.1 MGP_CASTEiJ_G0011318.1 mouse_genomes_project 2 58973096 58973489 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057215.1 MGP_CASTEiJ_G0025600.1 mouse_genomes_project 2 124826207 124837355 + MGP_CASTEiJ_P0057215 Bloc1s6 protein_coding protein_coding MGP_CASTEiJ_T0057216.1 MGP_CASTEiJ_G0025600.1 mouse_genomes_project 2 124826217 124833708 + Bloc1s6 protein_coding processed_transcript MGP_CASTEiJ_T0057217.1 MGP_CASTEiJ_G0025600.1 mouse_genomes_project 2 124826223 124835846 + Bloc1s6 protein_coding processed_transcript MGP_CASTEiJ_T0057218.1 MGP_CASTEiJ_G0025600.1 mouse_genomes_project 2 124826231 124826864 + Bloc1s6 protein_coding processed_transcript MGP_CASTEiJ_T0057219.1 MGP_CASTEiJ_G0025600.1 mouse_genomes_project 2 124826234 124833774 + Bloc1s6 protein_coding processed_transcript MGP_CASTEiJ_T0057220.1 MGP_CASTEiJ_G0025600.1 mouse_genomes_project 2 124826263 124834737 + Bloc1s6 protein_coding processed_transcript MGP_CASTEiJ_T0013204.1 MGP_CASTEiJ_G0011367.1 mouse_genomes_project 2 80269064 80269871 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059484.1 MGP_CASTEiJ_G0026126.1 mouse_genomes_project 2 177939381 177956682 + Spo11 protein_coding retained_intron MGP_CASTEiJ_T0059485.1 MGP_CASTEiJ_G0026126.1 mouse_genomes_project 2 177941509 177956676 + MGP_CASTEiJ_P0059485 Spo11 protein_coding protein_coding MGP_CASTEiJ_T0059486.1 MGP_CASTEiJ_G0026126.1 mouse_genomes_project 2 177941516 177956678 + MGP_CASTEiJ_P0059486 Spo11 protein_coding protein_coding MGP_CASTEiJ_T0059487.1 MGP_CASTEiJ_G0026126.1 mouse_genomes_project 2 177941516 177956687 + MGP_CASTEiJ_P0059487 Spo11 protein_coding protein_coding MGP_CASTEiJ_T0059488.1 MGP_CASTEiJ_G0026126.1 mouse_genomes_project 2 177948952 177955155 + Spo11 protein_coding processed_transcript MGP_CASTEiJ_T0053875.1 MGP_CASTEiJ_G0024791.1 mouse_genomes_project 2 29970869 30047440 + MGP_CASTEiJ_P0053875 protein_coding protein_coding MGP_CASTEiJ_T0053876.1 MGP_CASTEiJ_G0024791.1 mouse_genomes_project 2 29970919 29976387 + protein_coding retained_intron MGP_CASTEiJ_T0053877.1 MGP_CASTEiJ_G0024791.1 mouse_genomes_project 2 29976202 29987792 + protein_coding processed_transcript MGP_CASTEiJ_T0053878.1 MGP_CASTEiJ_G0024791.1 mouse_genomes_project 2 29991247 29995124 + protein_coding processed_transcript MGP_CASTEiJ_T0053879.1 MGP_CASTEiJ_G0024791.1 mouse_genomes_project 2 29994387 30001507 + MGP_CASTEiJ_P0053879 protein_coding protein_coding MGP_CASTEiJ_T0053880.1 MGP_CASTEiJ_G0024791.1 mouse_genomes_project 2 30019449 30026849 + protein_coding processed_transcript MGP_CASTEiJ_T0053881.1 MGP_CASTEiJ_G0024791.1 mouse_genomes_project 2 30029102 30050303 + MGP_CASTEiJ_P0053881 protein_coding protein_coding MGP_CASTEiJ_T0053882.1 MGP_CASTEiJ_G0024791.1 mouse_genomes_project 2 30037619 30047436 + MGP_CASTEiJ_P0053882 protein_coding protein_coding MGP_CASTEiJ_T0053884.1 MGP_CASTEiJ_G0024791.1 mouse_genomes_project 2 30046063 30047923 + protein_coding retained_intron MGP_CASTEiJ_T0053885.1 MGP_CASTEiJ_G0024791.1 mouse_genomes_project 2 30046760 30047434 + protein_coding retained_intron MGP_CASTEiJ_T0003962.1 MGP_CASTEiJ_G0003520.1 mouse_genomes_project 2 134079843 134081410 + Gm14285 antisense antisense MGP_CASTEiJ_T0017006.1 MGP_CASTEiJ_G0014719.1 mouse_genomes_project 2 25565097 25569226 - 2810430I11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0004048.1 MGP_CASTEiJ_G0003586.1 mouse_genomes_project 2 175307678 175310094 + Gm14637 antisense antisense MGP_CASTEiJ_T0054604.1 MGP_CASTEiJ_G0024923.1 mouse_genomes_project 2 49046506 49063181 - Mmadhc protein_coding processed_transcript MGP_CASTEiJ_T0054605.1 MGP_CASTEiJ_G0024923.1 mouse_genomes_project 2 49046506 49063203 - MGP_CASTEiJ_P0054605 Mmadhc protein_coding protein_coding MGP_CASTEiJ_T0054606.1 MGP_CASTEiJ_G0024923.1 mouse_genomes_project 2 49046975 49063173 - Mmadhc protein_coding processed_transcript MGP_CASTEiJ_T0054607.1 MGP_CASTEiJ_G0024923.1 mouse_genomes_project 2 49047721 49063167 - MGP_CASTEiJ_P0054607 Mmadhc protein_coding protein_coding MGP_CASTEiJ_T0054608.1 MGP_CASTEiJ_G0024923.1 mouse_genomes_project 2 49047734 49062917 - Mmadhc protein_coding processed_transcript MGP_CASTEiJ_T0054609.1 MGP_CASTEiJ_G0024923.1 mouse_genomes_project 2 49047746 49055706 - Mmadhc protein_coding processed_transcript MGP_CASTEiJ_T0054610.1 MGP_CASTEiJ_G0024923.1 mouse_genomes_project 2 49054358 49063162 - Mmadhc protein_coding processed_transcript MGP_CASTEiJ_T0054611.1 MGP_CASTEiJ_G0024923.1 mouse_genomes_project 2 49054371 49063287 - MGP_CASTEiJ_P0054611 Mmadhc protein_coding protein_coding MGP_CASTEiJ_T0010200.1 MGP_CASTEiJ_G0008388.1 mouse_genomes_project 2 173139893 173139957 - Mir7004 miRNA miRNA MGP_CASTEiJ_T0001028.1 MGP_CASTEiJ_G0000964.1 mouse_genomes_project 2 36769184 36774074 + TEC TEC MGP_CASTEiJ_T0056535.1 MGP_CASTEiJ_G0025437.1 mouse_genomes_project 2 112669513 112670452 - MGP_CASTEiJ_P0056535 Olfr1275 protein_coding protein_coding MGP_CASTEiJ_T0007173.1 MGP_CASTEiJ_G0005896.1 mouse_genomes_project 2 154654182 154678957 - lincRNA lincRNA MGP_CASTEiJ_T0013205.1 MGP_CASTEiJ_G0011368.1 mouse_genomes_project 2 80670508 80670790 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054143.1 MGP_CASTEiJ_G0024828.1 mouse_genomes_project 2 31316402 31348032 + MGP_CASTEiJ_P0054143 Angptl2 protein_coding protein_coding MGP_CASTEiJ_T0054144.1 MGP_CASTEiJ_G0024828.1 mouse_genomes_project 2 31316406 31344831 + Angptl2 protein_coding retained_intron MGP_CASTEiJ_T0054145.1 MGP_CASTEiJ_G0024828.1 mouse_genomes_project 2 31316431 31330443 + Angptl2 protein_coding retained_intron MGP_CASTEiJ_T0054146.1 MGP_CASTEiJ_G0024828.1 mouse_genomes_project 2 31316450 31342705 + MGP_CASTEiJ_P0054146 Angptl2 protein_coding protein_coding MGP_CASTEiJ_T0057177.1 MGP_CASTEiJ_G0025590.1 mouse_genomes_project 2 124296819 124328410 + MGP_CASTEiJ_P0057177 Sord protein_coding protein_coding MGP_CASTEiJ_T0001031.1 MGP_CASTEiJ_G0000967.1 mouse_genomes_project 2 37140668 37142629 - TEC TEC MGP_CASTEiJ_T0059598.1 MGP_CASTEiJ_G0026156.1 mouse_genomes_project 2 182681917 182751225 - MGP_CASTEiJ_P0059598 Taf4 protein_coding protein_coding MGP_CASTEiJ_T0059599.1 MGP_CASTEiJ_G0026156.1 mouse_genomes_project 2 182683204 182748726 - MGP_CASTEiJ_P0059599 Taf4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059600.1 MGP_CASTEiJ_G0026156.1 mouse_genomes_project 2 182690988 182691969 - Taf4 protein_coding processed_transcript MGP_CASTEiJ_T0059601.1 MGP_CASTEiJ_G0026156.1 mouse_genomes_project 2 182691764 182699097 - Taf4 protein_coding processed_transcript MGP_CASTEiJ_T0052337.1 MGP_CASTEiJ_G0024531.1 mouse_genomes_project 2 7089804 7096310 - 9230102O04Rik protein_coding processed_transcript MGP_CASTEiJ_T0052338.1 MGP_CASTEiJ_G0024531.1 mouse_genomes_project 2 7089805 7090757 - MGP_CASTEiJ_P0052338 9230102O04Rik protein_coding protein_coding MGP_CASTEiJ_T0056539.1 MGP_CASTEiJ_G0025441.1 mouse_genomes_project 2 112743916 112744857 + MGP_CASTEiJ_P0056539 protein_coding protein_coding MGP_CASTEiJ_T0007157.1 MGP_CASTEiJ_G0005884.1 mouse_genomes_project 2 147202617 147222116 - lincRNA lincRNA MGP_CASTEiJ_T0007158.1 MGP_CASTEiJ_G0005884.1 mouse_genomes_project 2 147203782 147209782 - lincRNA lincRNA MGP_CASTEiJ_T0058275.1 MGP_CASTEiJ_G0025861.1 mouse_genomes_project 2 156291951 156302381 - MGP_CASTEiJ_P0058275 Dusp15 protein_coding protein_coding MGP_CASTEiJ_T0058276.1 MGP_CASTEiJ_G0025861.1 mouse_genomes_project 2 156291978 156295516 - Dusp15 protein_coding retained_intron MGP_CASTEiJ_T0058277.1 MGP_CASTEiJ_G0025861.1 mouse_genomes_project 2 156295892 156302504 - MGP_CASTEiJ_P0058277 Dusp15 protein_coding protein_coding MGP_CASTEiJ_T0058278.1 MGP_CASTEiJ_G0025861.1 mouse_genomes_project 2 156295936 156302620 - MGP_CASTEiJ_P0058278 Dusp15 protein_coding protein_coding MGP_CASTEiJ_T0100914.1 MGP_CASTEiJ_G0037827.1 mouse_genomes_project 2 151376276 151376589 + Gm24221 snoRNA snoRNA MGP_CASTEiJ_T0001039.1 MGP_CASTEiJ_G0000975.1 mouse_genomes_project 2 68388700 68389566 + TEC TEC MGP_CASTEiJ_T0100924.1 MGP_CASTEiJ_G0037837.1 mouse_genomes_project 2 162211726 162211859 + Gm25187 snoRNA snoRNA MGP_CASTEiJ_T0052263.1 MGP_CASTEiJ_G0024520.1 mouse_genomes_project 2 2923494 2950867 + MGP_CASTEiJ_P0052263 Nudt5 protein_coding protein_coding MGP_CASTEiJ_T0052264.1 MGP_CASTEiJ_G0024520.1 mouse_genomes_project 2 2923509 2947797 + MGP_CASTEiJ_P0052264 Nudt5 protein_coding protein_coding MGP_CASTEiJ_T0052265.1 MGP_CASTEiJ_G0024520.1 mouse_genomes_project 2 2923728 2936758 + Nudt5 protein_coding retained_intron MGP_CASTEiJ_T0052266.1 MGP_CASTEiJ_G0024520.1 mouse_genomes_project 2 2923728 2943701 + MGP_CASTEiJ_P0052266 Nudt5 protein_coding protein_coding MGP_CASTEiJ_T0052267.1 MGP_CASTEiJ_G0024520.1 mouse_genomes_project 2 2923747 2949921 + MGP_CASTEiJ_P0052267 Nudt5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052268.1 MGP_CASTEiJ_G0024520.1 mouse_genomes_project 2 2923765 2941709 + MGP_CASTEiJ_P0052268 Nudt5 protein_coding protein_coding MGP_CASTEiJ_T0052269.1 MGP_CASTEiJ_G0024520.1 mouse_genomes_project 2 2926600 2940555 + Nudt5 protein_coding processed_transcript MGP_CASTEiJ_T0056537.1 MGP_CASTEiJ_G0025439.1 mouse_genomes_project 2 112694792 112726516 + MGP_CASTEiJ_P0056537 Olfr1278 protein_coding protein_coding MGP_CASTEiJ_T0003788.1 MGP_CASTEiJ_G0003396.1 mouse_genomes_project 2 18222307 18226263 - Gm13362 antisense antisense MGP_CASTEiJ_T0058452.1 MGP_CASTEiJ_G0025908.1 mouse_genomes_project 2 158695125 158740061 + Itch protein_coding retained_intron MGP_CASTEiJ_T0058453.1 MGP_CASTEiJ_G0025908.1 mouse_genomes_project 2 158695125 158700845 + Itch protein_coding retained_intron MGP_CASTEiJ_T0058454.1 MGP_CASTEiJ_G0025908.1 mouse_genomes_project 2 158695125 158795175 + MGP_CASTEiJ_P0058454 Itch protein_coding protein_coding MGP_CASTEiJ_T0058455.1 MGP_CASTEiJ_G0025908.1 mouse_genomes_project 2 158695140 158744250 + Itch protein_coding retained_intron MGP_CASTEiJ_T0058456.1 MGP_CASTEiJ_G0025908.1 mouse_genomes_project 2 158695147 158769867 + Itch protein_coding processed_transcript MGP_CASTEiJ_T0058457.1 MGP_CASTEiJ_G0025908.1 mouse_genomes_project 2 158695175 158795173 + MGP_CASTEiJ_P0058457 Itch protein_coding protein_coding MGP_CASTEiJ_T0058458.1 MGP_CASTEiJ_G0025908.1 mouse_genomes_project 2 158695177 158780404 + Itch protein_coding retained_intron MGP_CASTEiJ_T0054314.1 MGP_CASTEiJ_G0024853.1 mouse_genomes_project 2 34005391 34243126 - MGP_CASTEiJ_P0054314 Ttll11 protein_coding protein_coding MGP_CASTEiJ_T0054315.1 MGP_CASTEiJ_G0024853.1 mouse_genomes_project 2 34005391 34243126 - MGP_CASTEiJ_P0054315 Ttll11 protein_coding protein_coding MGP_CASTEiJ_T0054316.1 MGP_CASTEiJ_G0024853.1 mouse_genomes_project 2 34005812 34243271 - MGP_CASTEiJ_P0054316 Ttll11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054317.1 MGP_CASTEiJ_G0024853.1 mouse_genomes_project 2 34006382 34208114 - MGP_CASTEiJ_P0054317 Ttll11 protein_coding protein_coding MGP_CASTEiJ_T0054318.1 MGP_CASTEiJ_G0024853.1 mouse_genomes_project 2 34029327 34243211 - MGP_CASTEiJ_P0054318 Ttll11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054319.1 MGP_CASTEiJ_G0024853.1 mouse_genomes_project 2 34040992 34139427 - Ttll11 protein_coding processed_transcript MGP_CASTEiJ_T0054320.1 MGP_CASTEiJ_G0024853.1 mouse_genomes_project 2 34146663 34205714 - Ttll11 protein_coding processed_transcript MGP_CASTEiJ_T0054321.1 MGP_CASTEiJ_G0024853.1 mouse_genomes_project 2 34159604 34243418 - Ttll11 protein_coding processed_transcript MGP_CASTEiJ_T0054322.1 MGP_CASTEiJ_G0024853.1 mouse_genomes_project 2 34159902 34211362 - MGP_CASTEiJ_P0054322 Ttll11 protein_coding protein_coding MGP_CASTEiJ_T0054323.1 MGP_CASTEiJ_G0024853.1 mouse_genomes_project 2 34159922 34214918 - MGP_CASTEiJ_P0054323 Ttll11 protein_coding protein_coding MGP_CASTEiJ_T0055558.1 MGP_CASTEiJ_G0025101.1 mouse_genomes_project 2 85041065 85052545 - MGP_CASTEiJ_P0055558 Serping1 protein_coding protein_coding MGP_CASTEiJ_T0055559.1 MGP_CASTEiJ_G0025101.1 mouse_genomes_project 2 85041184 85052585 - MGP_CASTEiJ_P0055559 Serping1 protein_coding protein_coding MGP_CASTEiJ_T0055560.1 MGP_CASTEiJ_G0025101.1 mouse_genomes_project 2 85049696 85051694 - Serping1 protein_coding processed_transcript MGP_CASTEiJ_T0052693.1 MGP_CASTEiJ_G0024588.1 mouse_genomes_project 2 20039466 20111231 + MGP_CASTEiJ_P0052693 Gad2 protein_coding protein_coding MGP_CASTEiJ_T0052694.1 MGP_CASTEiJ_G0024588.1 mouse_genomes_project 2 20040583 20047319 + Gad2 protein_coding processed_transcript MGP_CASTEiJ_T0055328.1 MGP_CASTEiJ_G0025060.1 mouse_genomes_project 2 76571086 76589443 - MGP_CASTEiJ_P0055328 Prkra protein_coding protein_coding MGP_CASTEiJ_T0055329.1 MGP_CASTEiJ_G0025060.1 mouse_genomes_project 2 76577782 76581735 - Prkra protein_coding processed_transcript MGP_CASTEiJ_T0056741.1 MGP_CASTEiJ_G0025510.1 mouse_genomes_project 2 120832046 120844059 - MGP_CASTEiJ_P0056741 Ccdc32 protein_coding protein_coding MGP_CASTEiJ_T0056742.1 MGP_CASTEiJ_G0025510.1 mouse_genomes_project 2 120835988 120844059 - MGP_CASTEiJ_P0056742 Ccdc32 protein_coding protein_coding MGP_CASTEiJ_T0056743.1 MGP_CASTEiJ_G0025510.1 mouse_genomes_project 2 120836059 120844043 - MGP_CASTEiJ_P0056743 Ccdc32 protein_coding protein_coding MGP_CASTEiJ_T0100855.1 MGP_CASTEiJ_G0037768.1 mouse_genomes_project 2 24262278 24262417 - Snhg7 snoRNA snoRNA MGP_CASTEiJ_T0102211.1 MGP_CASTEiJ_G0038936.1 mouse_genomes_project 2 69733153 69735310 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0054269.1 MGP_CASTEiJ_G0024846.1 mouse_genomes_project 2 33396401 33417429 - MGP_CASTEiJ_P0054269 Rab14 protein_coding protein_coding MGP_CASTEiJ_T0054270.1 MGP_CASTEiJ_G0024846.1 mouse_genomes_project 2 33396401 33417429 - MGP_CASTEiJ_P0054270 Rab14 protein_coding protein_coding MGP_CASTEiJ_T0054271.1 MGP_CASTEiJ_G0024846.1 mouse_genomes_project 2 33398360 33400282 - Rab14 protein_coding processed_transcript MGP_CASTEiJ_T0054272.1 MGP_CASTEiJ_G0024846.1 mouse_genomes_project 2 33399421 33400380 - Rab14 protein_coding processed_transcript MGP_CASTEiJ_T0054273.1 MGP_CASTEiJ_G0024846.1 mouse_genomes_project 2 33399834 33417281 - Rab14 protein_coding retained_intron MGP_CASTEiJ_T0054274.1 MGP_CASTEiJ_G0024846.1 mouse_genomes_project 2 33402523 33408905 - Rab14 protein_coding processed_transcript MGP_CASTEiJ_T0054275.1 MGP_CASTEiJ_G0024846.1 mouse_genomes_project 2 33403944 33407664 - Rab14 protein_coding retained_intron MGP_CASTEiJ_T0054276.1 MGP_CASTEiJ_G0024846.1 mouse_genomes_project 2 33406143 33417098 - Rab14 protein_coding processed_transcript MGP_CASTEiJ_T0054277.1 MGP_CASTEiJ_G0024846.1 mouse_genomes_project 2 33407762 33409085 - Rab14 protein_coding processed_transcript MGP_CASTEiJ_T0054278.1 MGP_CASTEiJ_G0024846.1 mouse_genomes_project 2 33412284 33417291 - Rab14 protein_coding retained_intron MGP_CASTEiJ_T0054279.1 MGP_CASTEiJ_G0024846.1 mouse_genomes_project 2 33416182 33417287 - Rab14 protein_coding processed_transcript MGP_CASTEiJ_T0010070.1 MGP_CASTEiJ_G0008258.1 mouse_genomes_project 2 7744378 7744476 + Mir297c miRNA miRNA MGP_CASTEiJ_T0100901.1 MGP_CASTEiJ_G0037814.1 mouse_genomes_project 2 122946343 122946556 + Gm22865 snoRNA snoRNA MGP_CASTEiJ_T0057135.1 MGP_CASTEiJ_G0025578.1 mouse_genomes_project 2 123477272 123505129 - MGP_CASTEiJ_P0057135 protein_coding protein_coding MGP_CASTEiJ_T0058527.1 MGP_CASTEiJ_G0025921.1 mouse_genomes_project 2 159363247 159367562 + MGP_CASTEiJ_P0058527 Procr protein_coding protein_coding MGP_CASTEiJ_T0058528.1 MGP_CASTEiJ_G0025921.1 mouse_genomes_project 2 159363253 159366419 + MGP_CASTEiJ_P0058528 Procr protein_coding protein_coding MGP_CASTEiJ_T0058529.1 MGP_CASTEiJ_G0025921.1 mouse_genomes_project 2 159363280 159365886 + Procr protein_coding retained_intron MGP_CASTEiJ_T0058530.1 MGP_CASTEiJ_G0025921.1 mouse_genomes_project 2 159363473 159367559 + Procr protein_coding processed_transcript MGP_CASTEiJ_T0059807.1 MGP_CASTEiJ_G0026196.1 mouse_genomes_project 2 184231785 184253087 + MGP_CASTEiJ_P0059807 Zgpat protein_coding protein_coding MGP_CASTEiJ_T0059808.1 MGP_CASTEiJ_G0026196.1 mouse_genomes_project 2 184232256 184253075 + MGP_CASTEiJ_P0059808 Zgpat protein_coding protein_coding MGP_CASTEiJ_T0059809.1 MGP_CASTEiJ_G0026196.1 mouse_genomes_project 2 184232274 184255918 + MGP_CASTEiJ_P0059809 Zgpat protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059810.1 MGP_CASTEiJ_G0026196.1 mouse_genomes_project 2 184232303 184255916 + Zgpat protein_coding retained_intron MGP_CASTEiJ_T0059811.1 MGP_CASTEiJ_G0026196.1 mouse_genomes_project 2 184250686 184252112 + Zgpat protein_coding retained_intron MGP_CASTEiJ_T0059812.1 MGP_CASTEiJ_G0026196.1 mouse_genomes_project 2 184251931 184253031 + MGP_CASTEiJ_P0059812 Zgpat protein_coding protein_coding MGP_CASTEiJ_T0059095.1 MGP_CASTEiJ_G0026040.1 mouse_genomes_project 2 168819000 168820324 + MGP_CASTEiJ_P0059095 Wfdc10 protein_coding protein_coding MGP_CASTEiJ_T0057270.1 MGP_CASTEiJ_G0025611.1 mouse_genomes_project 2 127846131 127888609 - MGP_CASTEiJ_P0057270 Shc4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057271.1 MGP_CASTEiJ_G0025611.1 mouse_genomes_project 2 127846139 127944156 - MGP_CASTEiJ_P0057271 Shc4 protein_coding protein_coding MGP_CASTEiJ_T0057273.1 MGP_CASTEiJ_G0025611.1 mouse_genomes_project 2 127910051 127944922 - Shc4 protein_coding retained_intron MGP_CASTEiJ_T0001015.1 MGP_CASTEiJ_G0000951.1 mouse_genomes_project 2 22381027 22382848 - TEC TEC MGP_CASTEiJ_T0010131.1 MGP_CASTEiJ_G0008319.1 mouse_genomes_project 2 43586423 43586501 - Mir5129 miRNA miRNA MGP_CASTEiJ_T0010052.1 MGP_CASTEiJ_G0008240.1 mouse_genomes_project 2 7717327 7717435 + Gm22677 miRNA miRNA MGP_CASTEiJ_T0055981.1 MGP_CASTEiJ_G0025332.1 mouse_genomes_project 2 92083812 92110663 - Ddb2 protein_coding processed_transcript MGP_CASTEiJ_T0055982.1 MGP_CASTEiJ_G0025332.1 mouse_genomes_project 2 92083828 92113275 - Ddb2 protein_coding processed_transcript MGP_CASTEiJ_T0055983.1 MGP_CASTEiJ_G0025332.1 mouse_genomes_project 2 92083843 92113253 - MGP_CASTEiJ_P0055983 Ddb2 protein_coding protein_coding MGP_CASTEiJ_T0055984.1 MGP_CASTEiJ_G0025332.1 mouse_genomes_project 2 92083861 92113328 - Ddb2 protein_coding processed_transcript MGP_CASTEiJ_T0055985.1 MGP_CASTEiJ_G0025332.1 mouse_genomes_project 2 92084096 92113350 - MGP_CASTEiJ_P0055985 Ddb2 protein_coding protein_coding MGP_CASTEiJ_T0055774.1 MGP_CASTEiJ_G0025261.1 mouse_genomes_project 2 89801283 89802219 - MGP_CASTEiJ_P0055774 Olfr1214 protein_coding protein_coding MGP_CASTEiJ_T0013457.1 MGP_CASTEiJ_G0011620.1 mouse_genomes_project 2 184623436 184624338 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006979.1 MGP_CASTEiJ_G0005740.1 mouse_genomes_project 2 25790455 25825826 + F730016J06Rik lincRNA lincRNA MGP_CASTEiJ_T0006980.1 MGP_CASTEiJ_G0005740.1 mouse_genomes_project 2 25790461 25811971 + F730016J06Rik lincRNA lincRNA MGP_CASTEiJ_T0006981.1 MGP_CASTEiJ_G0005740.1 mouse_genomes_project 2 25816331 25823299 + F730016J06Rik lincRNA lincRNA MGP_CASTEiJ_T0058594.1 MGP_CASTEiJ_G0025932.1 mouse_genomes_project 2 159658657 159694598 - MGP_CASTEiJ_P0058594 Fer1l4 protein_coding protein_coding MGP_CASTEiJ_T0058595.1 MGP_CASTEiJ_G0025932.1 mouse_genomes_project 2 159658658 159664409 - Fer1l4 protein_coding retained_intron MGP_CASTEiJ_T0058596.1 MGP_CASTEiJ_G0025932.1 mouse_genomes_project 2 159658659 159678473 - Fer1l4 protein_coding retained_intron MGP_CASTEiJ_T0058597.1 MGP_CASTEiJ_G0025932.1 mouse_genomes_project 2 159669723 159671975 - MGP_CASTEiJ_P0058597 Fer1l4 protein_coding protein_coding MGP_CASTEiJ_T0058598.1 MGP_CASTEiJ_G0025932.1 mouse_genomes_project 2 159669872 159671977 - Fer1l4 protein_coding retained_intron MGP_CASTEiJ_T0058599.1 MGP_CASTEiJ_G0025932.1 mouse_genomes_project 2 159676847 159679208 - MGP_CASTEiJ_P0058599 Fer1l4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054897.1 MGP_CASTEiJ_G0024973.1 mouse_genomes_project 2 64250139 64413513 - MGP_CASTEiJ_P0054897 Cobll1 protein_coding protein_coding MGP_CASTEiJ_T0054898.1 MGP_CASTEiJ_G0024973.1 mouse_genomes_project 2 64250150 64413608 - MGP_CASTEiJ_P0054898 Cobll1 protein_coding protein_coding MGP_CASTEiJ_T0054899.1 MGP_CASTEiJ_G0024973.1 mouse_genomes_project 2 64250150 64413460 - MGP_CASTEiJ_P0054899 Cobll1 protein_coding protein_coding MGP_CASTEiJ_T0054900.1 MGP_CASTEiJ_G0024973.1 mouse_genomes_project 2 64250150 64413513 - MGP_CASTEiJ_P0054900 Cobll1 protein_coding protein_coding MGP_CASTEiJ_T0054901.1 MGP_CASTEiJ_G0024973.1 mouse_genomes_project 2 64250150 64413513 - MGP_CASTEiJ_P0054901 Cobll1 protein_coding protein_coding MGP_CASTEiJ_T0054902.1 MGP_CASTEiJ_G0024973.1 mouse_genomes_project 2 64260928 64268572 - Cobll1 protein_coding processed_transcript MGP_CASTEiJ_T0054903.1 MGP_CASTEiJ_G0024973.1 mouse_genomes_project 2 64292047 64413931 - MGP_CASTEiJ_P0054903 Cobll1 protein_coding protein_coding MGP_CASTEiJ_T0054904.1 MGP_CASTEiJ_G0024973.1 mouse_genomes_project 2 64299841 64413983 - MGP_CASTEiJ_P0054904 Cobll1 protein_coding protein_coding MGP_CASTEiJ_T0054905.1 MGP_CASTEiJ_G0024973.1 mouse_genomes_project 2 64302413 64410985 - Cobll1 protein_coding processed_transcript MGP_CASTEiJ_T0054906.1 MGP_CASTEiJ_G0024973.1 mouse_genomes_project 2 64302446 64413460 - MGP_CASTEiJ_P0054906 Cobll1 protein_coding protein_coding MGP_CASTEiJ_T0054907.1 MGP_CASTEiJ_G0024973.1 mouse_genomes_project 2 64318020 64413934 - Cobll1 protein_coding processed_transcript MGP_CASTEiJ_T0054908.1 MGP_CASTEiJ_G0024973.1 mouse_genomes_project 2 64320571 64414290 - Cobll1 protein_coding processed_transcript MGP_CASTEiJ_T0054909.1 MGP_CASTEiJ_G0024973.1 mouse_genomes_project 2 64320735 64413361 - Cobll1 protein_coding processed_transcript MGP_CASTEiJ_T0007211.1 MGP_CASTEiJ_G0005929.1 mouse_genomes_project 2 171469448 171472484 - lincRNA lincRNA MGP_CASTEiJ_T0007212.1 MGP_CASTEiJ_G0005929.1 mouse_genomes_project 2 171470343 171471829 - lincRNA lincRNA MGP_CASTEiJ_T0001007.1 MGP_CASTEiJ_G0000943.1 mouse_genomes_project 2 12094272 12096649 - TEC TEC MGP_CASTEiJ_T0007061.1 MGP_CASTEiJ_G0005807.1 mouse_genomes_project 2 78100416 78122592 + lincRNA lincRNA MGP_CASTEiJ_T0007062.1 MGP_CASTEiJ_G0005807.1 mouse_genomes_project 2 78100462 78245030 + lincRNA lincRNA MGP_CASTEiJ_T0013143.1 MGP_CASTEiJ_G0011306.1 mouse_genomes_project 2 55991119 55991809 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059463.1 MGP_CASTEiJ_G0026118.1 mouse_genomes_project 2 177228131 177242623 - MGP_CASTEiJ_P0059463 Aurka protein_coding protein_coding MGP_CASTEiJ_T0059464.1 MGP_CASTEiJ_G0026118.1 mouse_genomes_project 2 177228137 177242594 - MGP_CASTEiJ_P0059464 Aurka protein_coding protein_coding MGP_CASTEiJ_T0059465.1 MGP_CASTEiJ_G0026118.1 mouse_genomes_project 2 177229104 177235120 - Aurka protein_coding retained_intron MGP_CASTEiJ_T0059466.1 MGP_CASTEiJ_G0026118.1 mouse_genomes_project 2 177238649 177242609 - Aurka protein_coding retained_intron MGP_CASTEiJ_T0055049.1 MGP_CASTEiJ_G0025002.1 mouse_genomes_project 2 69284809 69287192 + Klhl23 protein_coding processed_transcript MGP_CASTEiJ_T0055050.1 MGP_CASTEiJ_G0025002.1 mouse_genomes_project 2 69285237 69300657 + MGP_CASTEiJ_P0055050 Klhl23 protein_coding protein_coding MGP_CASTEiJ_T0055051.1 MGP_CASTEiJ_G0025002.1 mouse_genomes_project 2 69287222 69289112 + Klhl23 protein_coding processed_transcript MGP_CASTEiJ_T0057793.1 MGP_CASTEiJ_G0025728.1 mouse_genomes_project 2 135469960 135487581 + MGP_CASTEiJ_P0057793 Crls1 protein_coding protein_coding MGP_CASTEiJ_T0057794.1 MGP_CASTEiJ_G0025728.1 mouse_genomes_project 2 135469972 135490235 + MGP_CASTEiJ_P0057794 Crls1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057795.1 MGP_CASTEiJ_G0025728.1 mouse_genomes_project 2 135470101 135489375 + MGP_CASTEiJ_P0057795 Crls1 protein_coding protein_coding MGP_CASTEiJ_T0057796.1 MGP_CASTEiJ_G0025728.1 mouse_genomes_project 2 135471025 135489338 + MGP_CASTEiJ_P0057796 Crls1 protein_coding protein_coding MGP_CASTEiJ_T0058961.1 MGP_CASTEiJ_G0025995.1 mouse_genomes_project 2 167078645 167113890 + MGP_CASTEiJ_P0058961 Mybl2 protein_coding protein_coding MGP_CASTEiJ_T0058962.1 MGP_CASTEiJ_G0025995.1 mouse_genomes_project 2 167083311 167088576 + Mybl2 protein_coding processed_transcript MGP_CASTEiJ_T0058963.1 MGP_CASTEiJ_G0025995.1 mouse_genomes_project 2 167096582 167102564 + Mybl2 protein_coding retained_intron MGP_CASTEiJ_T0058964.1 MGP_CASTEiJ_G0025995.1 mouse_genomes_project 2 167104176 167111906 + MGP_CASTEiJ_P0058964 Mybl2 protein_coding protein_coding MGP_CASTEiJ_T0058965.1 MGP_CASTEiJ_G0025995.1 mouse_genomes_project 2 167104578 167109980 + Mybl2 protein_coding retained_intron MGP_CASTEiJ_T0013238.1 MGP_CASTEiJ_G0011401.1 mouse_genomes_project 2 88188295 88188752 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006968.1 MGP_CASTEiJ_G0005732.1 mouse_genomes_project 2 22019073 22041163 - Gm13417 lincRNA lincRNA MGP_CASTEiJ_T0053754.1 MGP_CASTEiJ_G0024772.1 mouse_genomes_project 2 28737745 28799069 + MGP_CASTEiJ_P0053754 Prrx2 protein_coding protein_coding MGP_CASTEiJ_T0053755.1 MGP_CASTEiJ_G0024772.1 mouse_genomes_project 2 28749832 28799098 + MGP_CASTEiJ_P0053755 Prrx2 protein_coding protein_coding MGP_CASTEiJ_T0053756.1 MGP_CASTEiJ_G0024772.1 mouse_genomes_project 2 28750217 28794709 + Prrx2 protein_coding retained_intron MGP_CASTEiJ_T0053757.1 MGP_CASTEiJ_G0024772.1 mouse_genomes_project 2 28795374 28798967 + Prrx2 protein_coding retained_intron MGP_CASTEiJ_T0100863.1 MGP_CASTEiJ_G0037776.1 mouse_genomes_project 2 30237562 30237647 + Gm25632 snoRNA snoRNA MGP_CASTEiJ_T0055052.1 MGP_CASTEiJ_G0025003.1 mouse_genomes_project 2 69330454 69340672 + MGP_CASTEiJ_P0055052 Ssb protein_coding protein_coding MGP_CASTEiJ_T0055053.1 MGP_CASTEiJ_G0025003.1 mouse_genomes_project 2 69330454 69340733 + MGP_CASTEiJ_P0055053 Ssb protein_coding protein_coding MGP_CASTEiJ_T0055054.1 MGP_CASTEiJ_G0025003.1 mouse_genomes_project 2 69330515 69340396 + MGP_CASTEiJ_P0055054 Ssb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055055.1 MGP_CASTEiJ_G0025003.1 mouse_genomes_project 2 69330578 69336441 + MGP_CASTEiJ_P0055055 Ssb protein_coding protein_coding MGP_CASTEiJ_T0055056.1 MGP_CASTEiJ_G0025003.1 mouse_genomes_project 2 69332174 69338039 + Ssb protein_coding processed_transcript MGP_CASTEiJ_T0055057.1 MGP_CASTEiJ_G0025003.1 mouse_genomes_project 2 69337667 69340396 + MGP_CASTEiJ_P0055057 Ssb protein_coding protein_coding MGP_CASTEiJ_T0054658.1 MGP_CASTEiJ_G0024933.1 mouse_genomes_project 2 51589758 51637063 - MGP_CASTEiJ_P0054658 Stam2 protein_coding protein_coding MGP_CASTEiJ_T0054659.1 MGP_CASTEiJ_G0024933.1 mouse_genomes_project 2 51595374 51637144 - MGP_CASTEiJ_P0054659 Stam2 protein_coding protein_coding MGP_CASTEiJ_T0054660.1 MGP_CASTEiJ_G0024933.1 mouse_genomes_project 2 51605269 51637043 - Stam2 protein_coding retained_intron MGP_CASTEiJ_T0054661.1 MGP_CASTEiJ_G0024933.1 mouse_genomes_project 2 51605551 51637053 - MGP_CASTEiJ_P0054661 Stam2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054662.1 MGP_CASTEiJ_G0024933.1 mouse_genomes_project 2 51613526 51637019 - MGP_CASTEiJ_P0054662 Stam2 protein_coding protein_coding MGP_CASTEiJ_T0059402.1 MGP_CASTEiJ_G0026103.1 mouse_genomes_project 2 172962985 173082804 - MGP_CASTEiJ_P0059402 Nfatc2 protein_coding protein_coding MGP_CASTEiJ_T0059403.1 MGP_CASTEiJ_G0026103.1 mouse_genomes_project 2 172962985 173082699 - MGP_CASTEiJ_P0059403 Nfatc2 protein_coding protein_coding MGP_CASTEiJ_T0059404.1 MGP_CASTEiJ_G0026103.1 mouse_genomes_project 2 172962988 173042993 - Nfatc2 protein_coding processed_transcript MGP_CASTEiJ_T0059405.1 MGP_CASTEiJ_G0026103.1 mouse_genomes_project 2 173002941 173082728 - MGP_CASTEiJ_P0059405 Nfatc2 protein_coding protein_coding MGP_CASTEiJ_T0059406.1 MGP_CASTEiJ_G0026103.1 mouse_genomes_project 2 173006942 173095647 - Nfatc2 protein_coding processed_transcript MGP_CASTEiJ_T0059407.1 MGP_CASTEiJ_G0026103.1 mouse_genomes_project 2 173007854 173095672 - MGP_CASTEiJ_P0059407 Nfatc2 protein_coding protein_coding MGP_CASTEiJ_T0059408.1 MGP_CASTEiJ_G0026103.1 mouse_genomes_project 2 173022364 173082770 - Nfatc2 protein_coding retained_intron MGP_CASTEiJ_T0059409.1 MGP_CASTEiJ_G0026103.1 mouse_genomes_project 2 173057550 173082804 - Nfatc2 protein_coding retained_intron MGP_CASTEiJ_T0053470.1 MGP_CASTEiJ_G0024734.1 mouse_genomes_project 2 26886838 26892707 + MGP_CASTEiJ_P0053470 Setx protein_coding protein_coding MGP_CASTEiJ_T0053471.1 MGP_CASTEiJ_G0024734.1 mouse_genomes_project 2 26887640 26951587 + MGP_CASTEiJ_P0053471 Setx protein_coding protein_coding MGP_CASTEiJ_T0053472.1 MGP_CASTEiJ_G0024734.1 mouse_genomes_project 2 26888533 26892911 + Setx protein_coding retained_intron MGP_CASTEiJ_T0053473.1 MGP_CASTEiJ_G0024734.1 mouse_genomes_project 2 26926655 26932177 + Setx protein_coding processed_transcript MGP_CASTEiJ_T0053474.1 MGP_CASTEiJ_G0024734.1 mouse_genomes_project 2 26933871 26948656 + MGP_CASTEiJ_P0053474 Setx protein_coding protein_coding MGP_CASTEiJ_T0000995.1 MGP_CASTEiJ_G0000931.1 mouse_genomes_project 2 10298246 10300844 + TEC TEC MGP_CASTEiJ_T0013418.1 MGP_CASTEiJ_G0011581.1 mouse_genomes_project 2 160470273 160470854 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058085.1 MGP_CASTEiJ_G0025800.1 mouse_genomes_project 2 152138197 152142067 - MGP_CASTEiJ_P0058085 Cst3 protein_coding protein_coding MGP_CASTEiJ_T0058086.1 MGP_CASTEiJ_G0025800.1 mouse_genomes_project 2 152138944 152141942 - Cst3 protein_coding processed_transcript MGP_CASTEiJ_T0058087.1 MGP_CASTEiJ_G0025800.1 mouse_genomes_project 2 152139320 152142183 - MGP_CASTEiJ_P0058087 Cst3 protein_coding protein_coding MGP_CASTEiJ_T0054957.1 MGP_CASTEiJ_G0024981.1 mouse_genomes_project 2 65749462 65926435 - MGP_CASTEiJ_P0054957 Scn9a protein_coding protein_coding MGP_CASTEiJ_T0054958.1 MGP_CASTEiJ_G0024981.1 mouse_genomes_project 2 65749462 65926435 - MGP_CASTEiJ_P0054958 Scn9a protein_coding protein_coding MGP_CASTEiJ_T0054959.1 MGP_CASTEiJ_G0024981.1 mouse_genomes_project 2 65752057 65926136 - MGP_CASTEiJ_P0054959 Scn9a protein_coding protein_coding MGP_CASTEiJ_T0054960.1 MGP_CASTEiJ_G0024981.1 mouse_genomes_project 2 65752057 65926136 - MGP_CASTEiJ_P0054960 Scn9a protein_coding protein_coding MGP_CASTEiJ_T0054961.1 MGP_CASTEiJ_G0024981.1 mouse_genomes_project 2 65753084 65926136 - MGP_CASTEiJ_P0054961 Scn9a protein_coding protein_coding MGP_CASTEiJ_T0054962.1 MGP_CASTEiJ_G0024981.1 mouse_genomes_project 2 65818234 65821399 - Scn9a protein_coding retained_intron MGP_CASTEiJ_T0054963.1 MGP_CASTEiJ_G0024981.1 mouse_genomes_project 2 65845069 65926445 - Scn9a protein_coding retained_intron MGP_CASTEiJ_T0058892.1 MGP_CASTEiJ_G0025983.1 mouse_genomes_project 2 164497890 164556990 - MGP_CASTEiJ_P0058892 protein_coding protein_coding MGP_CASTEiJ_T0013398.1 MGP_CASTEiJ_G0011561.1 mouse_genomes_project 2 155074678 155075837 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100934.1 MGP_CASTEiJ_G0037847.1 mouse_genomes_project 2 172807792 172807929 + Gm22704 snoRNA snoRNA MGP_CASTEiJ_T0057267.1 MGP_CASTEiJ_G0025609.1 mouse_genomes_project 2 127715703 127718496 + MGP_CASTEiJ_P0057267 Gm9913 protein_coding protein_coding MGP_CASTEiJ_T0057301.1 MGP_CASTEiJ_G0025619.1 mouse_genomes_project 2 128547525 128740010 - MGP_CASTEiJ_P0057301 Atp8b4 protein_coding protein_coding MGP_CASTEiJ_T0057302.1 MGP_CASTEiJ_G0025619.1 mouse_genomes_project 2 128549056 128732052 - MGP_CASTEiJ_P0057302 Atp8b4 protein_coding protein_coding MGP_CASTEiJ_T0057303.1 MGP_CASTEiJ_G0025619.1 mouse_genomes_project 2 128597909 128732032 - Atp8b4 protein_coding retained_intron MGP_CASTEiJ_T0057304.1 MGP_CASTEiJ_G0025619.1 mouse_genomes_project 2 128597954 128740152 - MGP_CASTEiJ_P0057304 Atp8b4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057305.1 MGP_CASTEiJ_G0025619.1 mouse_genomes_project 2 128619817 128740837 - MGP_CASTEiJ_P0057305 Atp8b4 protein_coding protein_coding MGP_CASTEiJ_T0010167.1 MGP_CASTEiJ_G0008355.1 mouse_genomes_project 2 122914298 122914375 - Gm44325 miRNA miRNA MGP_CASTEiJ_T0059701.1 MGP_CASTEiJ_G0026181.1 mouse_genomes_project 2 183782839 183803750 - MGP_CASTEiJ_P0059701 Nkain4 protein_coding protein_coding MGP_CASTEiJ_T0059702.1 MGP_CASTEiJ_G0026181.1 mouse_genomes_project 2 183782839 183803750 - MGP_CASTEiJ_P0059702 Nkain4 protein_coding protein_coding MGP_CASTEiJ_T0059703.1 MGP_CASTEiJ_G0026181.1 mouse_genomes_project 2 183782839 183792087 - MGP_CASTEiJ_P0059703 Nkain4 protein_coding protein_coding MGP_CASTEiJ_T0059704.1 MGP_CASTEiJ_G0026181.1 mouse_genomes_project 2 183784050 183803671 - MGP_CASTEiJ_P0059704 Nkain4 protein_coding protein_coding MGP_CASTEiJ_T0059705.1 MGP_CASTEiJ_G0026181.1 mouse_genomes_project 2 183785237 183803745 - MGP_CASTEiJ_P0059705 Nkain4 protein_coding protein_coding MGP_CASTEiJ_T0059706.1 MGP_CASTEiJ_G0026181.1 mouse_genomes_project 2 183792173 183803354 - Nkain4 protein_coding processed_transcript MGP_CASTEiJ_T0059707.1 MGP_CASTEiJ_G0026181.1 mouse_genomes_project 2 183792749 183798631 - MGP_CASTEiJ_P0059707 Nkain4 protein_coding protein_coding MGP_CASTEiJ_T0013222.1 MGP_CASTEiJ_G0011385.1 mouse_genomes_project 2 85572598 85572819 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013161.1 MGP_CASTEiJ_G0011324.1 mouse_genomes_project 2 61055013 61055329 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059089.1 MGP_CASTEiJ_G0026037.1 mouse_genomes_project 2 168754015 168765520 - MGP_CASTEiJ_P0059089 Wfdc8 protein_coding protein_coding MGP_CASTEiJ_T0059090.1 MGP_CASTEiJ_G0026037.1 mouse_genomes_project 2 168754023 168769528 - MGP_CASTEiJ_P0059090 Wfdc8 protein_coding protein_coding MGP_CASTEiJ_T0059091.1 MGP_CASTEiJ_G0026037.1 mouse_genomes_project 2 168754769 168765520 - MGP_CASTEiJ_P0059091 Wfdc8 protein_coding protein_coding MGP_CASTEiJ_T0013231.1 MGP_CASTEiJ_G0011394.1 mouse_genomes_project 2 87835295 87835701 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013019.1 MGP_CASTEiJ_G0011182.1 mouse_genomes_project 2 7316031 7318329 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003845.1 MGP_CASTEiJ_G0003441.1 mouse_genomes_project 2 43678834 43681708 + Zeb2os antisense antisense MGP_CASTEiJ_T0003846.1 MGP_CASTEiJ_G0003441.1 mouse_genomes_project 2 43679917 43681708 + Zeb2os antisense antisense MGP_CASTEiJ_T0007004.1 MGP_CASTEiJ_G0005758.1 mouse_genomes_project 2 43936305 43985227 + Gm13479 lincRNA lincRNA MGP_CASTEiJ_T0010195.1 MGP_CASTEiJ_G0008383.1 mouse_genomes_project 2 167096460 167096526 + Mir7003 miRNA miRNA MGP_CASTEiJ_T0099623.1 MGP_CASTEiJ_G0036536.1 mouse_genomes_project 2 22556058 22556162 - Gm24875 snRNA snRNA MGP_CASTEiJ_T0013220.1 MGP_CASTEiJ_G0011383.1 mouse_genomes_project 2 84380778 84381603 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058734.1 MGP_CASTEiJ_G0025950.1 mouse_genomes_project 2 160561811 160576419 - MGP_CASTEiJ_P0058734 Sla2 protein_coding protein_coding MGP_CASTEiJ_T0058736.1 MGP_CASTEiJ_G0025950.1 mouse_genomes_project 2 160562276 160576533 - MGP_CASTEiJ_P0058736 Sla2 protein_coding protein_coding MGP_CASTEiJ_T0013364.1 MGP_CASTEiJ_G0011527.1 mouse_genomes_project 2 143870893 143871384 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100905.1 MGP_CASTEiJ_G0037818.1 mouse_genomes_project 2 132488406 132488535 + Gm24665 snoRNA snoRNA MGP_CASTEiJ_T0055791.1 MGP_CASTEiJ_G0025276.1 mouse_genomes_project 2 90098825 90099743 - MGP_CASTEiJ_P0055791 Olfr1230 protein_coding protein_coding MGP_CASTEiJ_T0013167.1 MGP_CASTEiJ_G0011330.1 mouse_genomes_project 2 65709871 65710248 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102237.1 MGP_CASTEiJ_G0038962.1 mouse_genomes_project 2 88373486 88374423 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0056969.1 MGP_CASTEiJ_G0025554.1 mouse_genomes_project 2 122549303 122604624 + MGP_CASTEiJ_P0056969 protein_coding protein_coding MGP_CASTEiJ_T0056970.1 MGP_CASTEiJ_G0025554.1 mouse_genomes_project 2 122549401 122644901 + MGP_CASTEiJ_P0056970 protein_coding protein_coding MGP_CASTEiJ_T0056971.1 MGP_CASTEiJ_G0025554.1 mouse_genomes_project 2 122549401 122644658 + MGP_CASTEiJ_P0056971 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056972.1 MGP_CASTEiJ_G0025554.1 mouse_genomes_project 2 122610369 122644901 + MGP_CASTEiJ_P0056972 protein_coding protein_coding MGP_CASTEiJ_T0056973.1 MGP_CASTEiJ_G0025554.1 mouse_genomes_project 2 122627898 122644651 + MGP_CASTEiJ_P0056973 protein_coding protein_coding MGP_CASTEiJ_T0056974.1 MGP_CASTEiJ_G0025554.1 mouse_genomes_project 2 122631149 122662170 + MGP_CASTEiJ_P0056974 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056975.1 MGP_CASTEiJ_G0025554.1 mouse_genomes_project 2 122642526 122644699 + protein_coding retained_intron MGP_CASTEiJ_T0056976.1 MGP_CASTEiJ_G0025554.1 mouse_genomes_project 2 122644080 122659640 + protein_coding processed_transcript MGP_CASTEiJ_T0017073.1 MGP_CASTEiJ_G0014764.1 mouse_genomes_project 2 105828504 105838219 + Platr14 processed_transcript processed_transcript MGP_CASTEiJ_T0017074.1 MGP_CASTEiJ_G0014764.1 mouse_genomes_project 2 105828520 105838216 + Platr14 processed_transcript processed_transcript MGP_CASTEiJ_T0017075.1 MGP_CASTEiJ_G0014764.1 mouse_genomes_project 2 105828525 105841605 + Platr14 processed_transcript processed_transcript MGP_CASTEiJ_T0017076.1 MGP_CASTEiJ_G0014764.1 mouse_genomes_project 2 105828533 105838292 + Platr14 processed_transcript processed_transcript MGP_CASTEiJ_T0017077.1 MGP_CASTEiJ_G0014764.1 mouse_genomes_project 2 105828800 105838213 + Platr14 processed_transcript processed_transcript MGP_CASTEiJ_T0017078.1 MGP_CASTEiJ_G0014764.1 mouse_genomes_project 2 105837347 105838998 + Platr14 processed_transcript processed_transcript MGP_CASTEiJ_T0013104.1 MGP_CASTEiJ_G0011267.1 mouse_genomes_project 2 37886630 37887727 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003836.1 MGP_CASTEiJ_G0003433.1 mouse_genomes_project 2 34076019 34080226 + 9030204H09Rik antisense antisense MGP_CASTEiJ_T0055795.1 MGP_CASTEiJ_G0025280.1 mouse_genomes_project 2 90181111 90182056 - MGP_CASTEiJ_P0055795 Olfr1234 protein_coding protein_coding MGP_CASTEiJ_T0055796.1 MGP_CASTEiJ_G0025280.1 mouse_genomes_project 2 90181111 90183490 - MGP_CASTEiJ_P0055796 Olfr1234 protein_coding protein_coding MGP_CASTEiJ_T0055797.1 MGP_CASTEiJ_G0025280.1 mouse_genomes_project 2 90182192 90183494 - Olfr1234 protein_coding processed_transcript MGP_CASTEiJ_T0052249.1 MGP_CASTEiJ_G0024517.1 mouse_genomes_project 2 2186827 2295644 + MGP_CASTEiJ_P0052249 Ccdc3 protein_coding protein_coding MGP_CASTEiJ_T0055718.1 MGP_CASTEiJ_G0025210.1 mouse_genomes_project 2 88271906 88272842 - MGP_CASTEiJ_P0055718 Olfr1138 protein_coding protein_coding MGP_CASTEiJ_T0000991.1 MGP_CASTEiJ_G0000927.1 mouse_genomes_project 2 9629455 9630854 - TEC TEC MGP_CASTEiJ_T0001051.1 MGP_CASTEiJ_G0000986.1 mouse_genomes_project 2 131582946 131584896 - TEC TEC MGP_CASTEiJ_T0055261.1 MGP_CASTEiJ_G0025039.1 mouse_genomes_project 2 74340922 74401438 - MGP_CASTEiJ_P0055261 protein_coding protein_coding MGP_CASTEiJ_T0055262.1 MGP_CASTEiJ_G0025039.1 mouse_genomes_project 2 74340965 74401438 - MGP_CASTEiJ_P0055262 protein_coding protein_coding MGP_CASTEiJ_T0055263.1 MGP_CASTEiJ_G0025039.1 mouse_genomes_project 2 74340972 74353891 - protein_coding processed_transcript MGP_CASTEiJ_T0055264.1 MGP_CASTEiJ_G0025039.1 mouse_genomes_project 2 74341964 74401421 - protein_coding processed_transcript MGP_CASTEiJ_T0055265.1 MGP_CASTEiJ_G0025039.1 mouse_genomes_project 2 74342667 74400714 - MGP_CASTEiJ_P0055265 protein_coding protein_coding MGP_CASTEiJ_T0055266.1 MGP_CASTEiJ_G0025039.1 mouse_genomes_project 2 74352696 74401870 - MGP_CASTEiJ_P0055266 protein_coding protein_coding MGP_CASTEiJ_T0055267.1 MGP_CASTEiJ_G0025039.1 mouse_genomes_project 2 74358907 74401007 - MGP_CASTEiJ_P0055267 protein_coding protein_coding MGP_CASTEiJ_T0055268.1 MGP_CASTEiJ_G0025039.1 mouse_genomes_project 2 74369368 74401925 - protein_coding processed_transcript MGP_CASTEiJ_T0055269.1 MGP_CASTEiJ_G0025039.1 mouse_genomes_project 2 74372965 74401406 - protein_coding processed_transcript MGP_CASTEiJ_T0055270.1 MGP_CASTEiJ_G0025039.1 mouse_genomes_project 2 74390344 74401370 - protein_coding processed_transcript MGP_CASTEiJ_T0055271.1 MGP_CASTEiJ_G0025039.1 mouse_genomes_project 2 74390613 74401384 - MGP_CASTEiJ_P0055271 protein_coding protein_coding MGP_CASTEiJ_T0100896.1 MGP_CASTEiJ_G0037809.1 mouse_genomes_project 2 109312569 109312701 - Gm23439 snoRNA snoRNA MGP_CASTEiJ_T0059052.1 MGP_CASTEiJ_G0026026.1 mouse_genomes_project 2 168531849 168549198 - MGP_CASTEiJ_P0059052 Matn4 protein_coding protein_coding MGP_CASTEiJ_T0059053.1 MGP_CASTEiJ_G0026026.1 mouse_genomes_project 2 168531849 168549747 - MGP_CASTEiJ_P0059053 Matn4 protein_coding protein_coding MGP_CASTEiJ_T0059054.1 MGP_CASTEiJ_G0026026.1 mouse_genomes_project 2 168531849 168549200 - MGP_CASTEiJ_P0059054 Matn4 protein_coding protein_coding MGP_CASTEiJ_T0059055.1 MGP_CASTEiJ_G0026026.1 mouse_genomes_project 2 168531849 168549198 - MGP_CASTEiJ_P0059055 Matn4 protein_coding protein_coding MGP_CASTEiJ_T0059056.1 MGP_CASTEiJ_G0026026.1 mouse_genomes_project 2 168538613 168549199 - Matn4 protein_coding retained_intron MGP_CASTEiJ_T0057563.1 MGP_CASTEiJ_G0025680.1 mouse_genomes_project 2 132821286 132828107 - MGP_CASTEiJ_P0057563 Cpxm1 protein_coding protein_coding MGP_CASTEiJ_T0057564.1 MGP_CASTEiJ_G0025680.1 mouse_genomes_project 2 132821287 132823804 - Cpxm1 protein_coding retained_intron MGP_CASTEiJ_T0016987.1 MGP_CASTEiJ_G0014709.1 mouse_genomes_project 2 11836028 11862549 + Gm13266 processed_transcript lincRNA MGP_CASTEiJ_T0016988.1 MGP_CASTEiJ_G0014709.1 mouse_genomes_project 2 11836028 11855526 + Gm13266 processed_transcript retained_intron MGP_CASTEiJ_T0016989.1 MGP_CASTEiJ_G0014709.1 mouse_genomes_project 2 11836036 11855346 + Gm13266 processed_transcript lincRNA MGP_CASTEiJ_T0007199.1 MGP_CASTEiJ_G0005918.1 mouse_genomes_project 2 167189216 167192428 - Gm14254 lincRNA lincRNA MGP_CASTEiJ_T0056533.1 MGP_CASTEiJ_G0025436.1 mouse_genomes_project 2 112605848 112644447 - MGP_CASTEiJ_P0056533 4930430A15Rik protein_coding protein_coding MGP_CASTEiJ_T0056534.1 MGP_CASTEiJ_G0025436.1 mouse_genomes_project 2 112630332 112668263 - MGP_CASTEiJ_P0056534 4930430A15Rik protein_coding protein_coding MGP_CASTEiJ_T0013230.1 MGP_CASTEiJ_G0011393.1 mouse_genomes_project 2 87806727 87807127 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013120.1 MGP_CASTEiJ_G0011283.1 mouse_genomes_project 2 47488183 47489202 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007111.1 MGP_CASTEiJ_G0005848.1 mouse_genomes_project 2 117131355 117150688 - 3110099E03Rik lincRNA lincRNA MGP_CASTEiJ_T0007112.1 MGP_CASTEiJ_G0005848.1 mouse_genomes_project 2 117132894 117167207 - 3110099E03Rik lincRNA lincRNA MGP_CASTEiJ_T0007113.1 MGP_CASTEiJ_G0005848.1 mouse_genomes_project 2 117133595 117150694 - 3110099E03Rik lincRNA lincRNA MGP_CASTEiJ_T0053698.1 MGP_CASTEiJ_G0024765.1 mouse_genomes_project 2 28250832 28266144 - MGP_CASTEiJ_P0053698 Crat protein_coding protein_coding MGP_CASTEiJ_T0053699.1 MGP_CASTEiJ_G0024765.1 mouse_genomes_project 2 28250837 28257067 - Crat protein_coding processed_transcript MGP_CASTEiJ_T0053700.1 MGP_CASTEiJ_G0024765.1 mouse_genomes_project 2 28251489 28266186 - MGP_CASTEiJ_P0053700 Crat protein_coding protein_coding MGP_CASTEiJ_T0053701.1 MGP_CASTEiJ_G0024765.1 mouse_genomes_project 2 28252886 28255673 - MGP_CASTEiJ_P0053701 Crat protein_coding protein_coding MGP_CASTEiJ_T0053702.1 MGP_CASTEiJ_G0024765.1 mouse_genomes_project 2 28252966 28265897 - MGP_CASTEiJ_P0053702 Crat protein_coding protein_coding MGP_CASTEiJ_T0053703.1 MGP_CASTEiJ_G0024765.1 mouse_genomes_project 2 28253025 28255346 - MGP_CASTEiJ_P0053703 Crat protein_coding protein_coding MGP_CASTEiJ_T0053704.1 MGP_CASTEiJ_G0024765.1 mouse_genomes_project 2 28258465 28265681 - MGP_CASTEiJ_P0053704 Crat protein_coding protein_coding MGP_CASTEiJ_T0053705.1 MGP_CASTEiJ_G0024765.1 mouse_genomes_project 2 28258510 28265921 - MGP_CASTEiJ_P0053705 Crat protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053706.1 MGP_CASTEiJ_G0024765.1 mouse_genomes_project 2 28263434 28264712 - Crat protein_coding processed_transcript MGP_CASTEiJ_T0053707.1 MGP_CASTEiJ_G0024765.1 mouse_genomes_project 2 28263530 28265891 - MGP_CASTEiJ_P0053707 Crat protein_coding protein_coding MGP_CASTEiJ_T0053708.1 MGP_CASTEiJ_G0024765.1 mouse_genomes_project 2 28263551 28265706 - MGP_CASTEiJ_P0053708 Crat protein_coding protein_coding MGP_CASTEiJ_T0053709.1 MGP_CASTEiJ_G0024765.1 mouse_genomes_project 2 28264432 28265973 - Crat protein_coding processed_transcript MGP_CASTEiJ_T0053710.1 MGP_CASTEiJ_G0024765.1 mouse_genomes_project 2 28264967 28265780 - MGP_CASTEiJ_P0053710 Crat protein_coding protein_coding MGP_CASTEiJ_T0057878.1 MGP_CASTEiJ_G0025747.1 mouse_genomes_project 2 142992404 143046112 - MGP_CASTEiJ_P0057878 Esf1 protein_coding protein_coding MGP_CASTEiJ_T0057879.1 MGP_CASTEiJ_G0025747.1 mouse_genomes_project 2 143023242 143030798 - Esf1 protein_coding retained_intron MGP_CASTEiJ_T0057881.1 MGP_CASTEiJ_G0025747.1 mouse_genomes_project 2 143032393 143036025 - Esf1 protein_coding retained_intron MGP_CASTEiJ_T0057882.1 MGP_CASTEiJ_G0025747.1 mouse_genomes_project 2 143032430 143034384 - Esf1 protein_coding retained_intron MGP_CASTEiJ_T0057883.1 MGP_CASTEiJ_G0025747.1 mouse_genomes_project 2 143034905 143036025 - Esf1 protein_coding retained_intron MGP_CASTEiJ_T0010152.1 MGP_CASTEiJ_G0008340.1 mouse_genomes_project 2 94474816 94474895 - Mir7001 miRNA miRNA MGP_CASTEiJ_T0058357.1 MGP_CASTEiJ_G0025878.1 mouse_genomes_project 2 157301948 157316661 - MGP_CASTEiJ_P0058357 Sun5 protein_coding protein_coding MGP_CASTEiJ_T0058358.1 MGP_CASTEiJ_G0025878.1 mouse_genomes_project 2 157306485 157316661 - Sun5 protein_coding processed_transcript MGP_CASTEiJ_T0058359.1 MGP_CASTEiJ_G0025878.1 mouse_genomes_project 2 157310222 157316661 - Sun5 protein_coding processed_transcript MGP_CASTEiJ_T0013099.1 MGP_CASTEiJ_G0011262.1 mouse_genomes_project 2 37535870 37536233 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013304.1 MGP_CASTEiJ_G0011467.1 mouse_genomes_project 2 113352648 113353724 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057917.1 MGP_CASTEiJ_G0025756.1 mouse_genomes_project 2 146551776 146819878 + MGP_CASTEiJ_P0057917 Pcsk2 protein_coding protein_coding MGP_CASTEiJ_T0057918.1 MGP_CASTEiJ_G0025756.1 mouse_genomes_project 2 146551891 146588424 + Pcsk2 protein_coding processed_transcript MGP_CASTEiJ_T0057919.1 MGP_CASTEiJ_G0025756.1 mouse_genomes_project 2 146754769 146817641 + MGP_CASTEiJ_P0057919 Pcsk2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058449.1 MGP_CASTEiJ_G0025907.1 mouse_genomes_project 2 158621741 158636143 - MGP_CASTEiJ_P0058449 Gm4737 protein_coding protein_coding MGP_CASTEiJ_T0058450.1 MGP_CASTEiJ_G0025907.1 mouse_genomes_project 2 158628109 158636093 - MGP_CASTEiJ_P0058450 Gm4737 protein_coding protein_coding MGP_CASTEiJ_T0058451.1 MGP_CASTEiJ_G0025907.1 mouse_genomes_project 2 158630914 158636093 - Gm4737 protein_coding retained_intron MGP_CASTEiJ_T0057032.1 MGP_CASTEiJ_G0025565.1 mouse_genomes_project 2 123112695 123123696 - MGP_CASTEiJ_P0057032 Zscan29 protein_coding protein_coding MGP_CASTEiJ_T0057033.1 MGP_CASTEiJ_G0025565.1 mouse_genomes_project 2 123112695 123123677 - MGP_CASTEiJ_P0057033 Zscan29 protein_coding protein_coding MGP_CASTEiJ_T0057034.1 MGP_CASTEiJ_G0025565.1 mouse_genomes_project 2 123113481 123117083 - Zscan29 protein_coding retained_intron MGP_CASTEiJ_T0055778.1 MGP_CASTEiJ_G0025265.1 mouse_genomes_project 2 89881860 89882796 - MGP_CASTEiJ_P0055778 Olfr1218 protein_coding protein_coding MGP_CASTEiJ_T0053316.1 MGP_CASTEiJ_G0024702.1 mouse_genomes_project 2 24606654 24631672 + MGP_CASTEiJ_P0053316 Adamts13 protein_coding protein_coding MGP_CASTEiJ_T0053317.1 MGP_CASTEiJ_G0024702.1 mouse_genomes_project 2 24606731 24636802 + MGP_CASTEiJ_P0053317 Adamts13 protein_coding protein_coding MGP_CASTEiJ_T0053318.1 MGP_CASTEiJ_G0024702.1 mouse_genomes_project 2 24633836 24636620 + Adamts13 protein_coding processed_transcript MGP_CASTEiJ_T0054363.1 MGP_CASTEiJ_G0024874.1 mouse_genomes_project 2 35063886 35064834 + MGP_CASTEiJ_P0054363 Olfr352 protein_coding protein_coding MGP_CASTEiJ_T0058111.1 MGP_CASTEiJ_G0025810.1 mouse_genomes_project 2 153951008 153980109 + MGP_CASTEiJ_P0058111 Entpd6 protein_coding protein_coding MGP_CASTEiJ_T0058112.1 MGP_CASTEiJ_G0025810.1 mouse_genomes_project 2 153951026 153980115 + MGP_CASTEiJ_P0058112 Entpd6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058113.1 MGP_CASTEiJ_G0025810.1 mouse_genomes_project 2 153951047 153971754 + Entpd6 protein_coding retained_intron MGP_CASTEiJ_T0058114.1 MGP_CASTEiJ_G0025810.1 mouse_genomes_project 2 153951058 153972225 + Entpd6 protein_coding processed_transcript MGP_CASTEiJ_T0058115.1 MGP_CASTEiJ_G0025810.1 mouse_genomes_project 2 153951137 153956323 + Entpd6 protein_coding processed_transcript MGP_CASTEiJ_T0053822.1 MGP_CASTEiJ_G0024781.1 mouse_genomes_project 2 29260374 29410886 + MGP_CASTEiJ_P0053822 Hmcn2 protein_coding protein_coding MGP_CASTEiJ_T0053823.1 MGP_CASTEiJ_G0024781.1 mouse_genomes_project 2 29348898 29354331 + MGP_CASTEiJ_P0053823 Hmcn2 protein_coding protein_coding MGP_CASTEiJ_T0053824.1 MGP_CASTEiJ_G0024781.1 mouse_genomes_project 2 29386612 29410872 + Hmcn2 protein_coding retained_intron MGP_CASTEiJ_T0053825.1 MGP_CASTEiJ_G0024781.1 mouse_genomes_project 2 29395419 29410885 + Hmcn2 protein_coding processed_transcript MGP_CASTEiJ_T0053826.1 MGP_CASTEiJ_G0024781.1 mouse_genomes_project 2 29404852 29408146 + Hmcn2 protein_coding retained_intron MGP_CASTEiJ_T0057311.1 MGP_CASTEiJ_G0025621.1 mouse_genomes_project 2 128838241 128861236 - MGP_CASTEiJ_P0057311 Hdc protein_coding protein_coding MGP_CASTEiJ_T0057312.1 MGP_CASTEiJ_G0025621.1 mouse_genomes_project 2 128839158 128842849 - Hdc protein_coding processed_transcript MGP_CASTEiJ_T0057313.1 MGP_CASTEiJ_G0025621.1 mouse_genomes_project 2 128844824 128861219 - Hdc protein_coding retained_intron MGP_CASTEiJ_T0057314.1 MGP_CASTEiJ_G0025621.1 mouse_genomes_project 2 128848671 128851997 - Hdc protein_coding processed_transcript MGP_CASTEiJ_T0057315.1 MGP_CASTEiJ_G0025621.1 mouse_genomes_project 2 128858839 128861857 - Hdc protein_coding processed_transcript MGP_CASTEiJ_T0053106.1 MGP_CASTEiJ_G0024664.1 mouse_genomes_project 2 23269839 23270822 + MGP_CASTEiJ_P0053106 Bmyc protein_coding protein_coding MGP_CASTEiJ_T0054710.1 MGP_CASTEiJ_G0024945.1 mouse_genomes_project 2 57219398 57307151 - MGP_CASTEiJ_P0054710 Acvr1c protein_coding protein_coding MGP_CASTEiJ_T0054711.1 MGP_CASTEiJ_G0024945.1 mouse_genomes_project 2 57219398 57307151 - MGP_CASTEiJ_P0054711 Acvr1c protein_coding protein_coding MGP_CASTEiJ_T0054712.1 MGP_CASTEiJ_G0024945.1 mouse_genomes_project 2 57219581 57307079 - MGP_CASTEiJ_P0054712 Acvr1c protein_coding protein_coding MGP_CASTEiJ_T0054713.1 MGP_CASTEiJ_G0024945.1 mouse_genomes_project 2 57242527 57271660 - MGP_CASTEiJ_P0054713 Acvr1c protein_coding protein_coding MGP_CASTEiJ_T0059676.1 MGP_CASTEiJ_G0026174.1 mouse_genomes_project 2 183437453 183459098 - MGP_CASTEiJ_P0059676 Tcfl5 protein_coding protein_coding MGP_CASTEiJ_T0059677.1 MGP_CASTEiJ_G0026174.1 mouse_genomes_project 2 183438089 183458698 - MGP_CASTEiJ_P0059677 Tcfl5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059678.1 MGP_CASTEiJ_G0026174.1 mouse_genomes_project 2 183451735 183459057 - MGP_CASTEiJ_P0059678 Tcfl5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059679.1 MGP_CASTEiJ_G0026174.1 mouse_genomes_project 2 183453948 183458828 - Tcfl5 protein_coding retained_intron MGP_CASTEiJ_T0007083.1 MGP_CASTEiJ_G0005823.1 mouse_genomes_project 2 95838912 95840638 - Gm13793 lincRNA lincRNA MGP_CASTEiJ_T0056325.1 MGP_CASTEiJ_G0025390.1 mouse_genomes_project 2 104649298 104681135 - MGP_CASTEiJ_P0056325 Cat protein_coding protein_coding MGP_CASTEiJ_T0056326.1 MGP_CASTEiJ_G0025390.1 mouse_genomes_project 2 104650088 104681100 - MGP_CASTEiJ_P0056326 Cat protein_coding protein_coding MGP_CASTEiJ_T0055769.1 MGP_CASTEiJ_G0025258.1 mouse_genomes_project 2 89774334 89775270 + MGP_CASTEiJ_P0055769 Olfr1212 protein_coding protein_coding MGP_CASTEiJ_T0054492.1 MGP_CASTEiJ_G0024909.1 mouse_genomes_project 2 38470932 38471357 - MGP_CASTEiJ_P0054492 protein_coding protein_coding MGP_CASTEiJ_T0003945.1 MGP_CASTEiJ_G0003508.1 mouse_genomes_project 2 124821173 124826059 - Bloc1s6os antisense antisense MGP_CASTEiJ_T0056939.1 MGP_CASTEiJ_G0025550.1 mouse_genomes_project 2 122416631 122474292 - MGP_CASTEiJ_P0056939 Zfp106 protein_coding protein_coding MGP_CASTEiJ_T0056940.1 MGP_CASTEiJ_G0025550.1 mouse_genomes_project 2 122420222 122450070 - MGP_CASTEiJ_P0056940 Zfp106 protein_coding protein_coding MGP_CASTEiJ_T0056941.1 MGP_CASTEiJ_G0025550.1 mouse_genomes_project 2 122420381 122474251 - MGP_CASTEiJ_P0056941 Zfp106 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056942.1 MGP_CASTEiJ_G0025550.1 mouse_genomes_project 2 122420939 122423470 - Zfp106 protein_coding retained_intron MGP_CASTEiJ_T0056943.1 MGP_CASTEiJ_G0025550.1 mouse_genomes_project 2 122429486 122431244 - Zfp106 protein_coding retained_intron MGP_CASTEiJ_T0056944.1 MGP_CASTEiJ_G0025550.1 mouse_genomes_project 2 122433410 122435332 - MGP_CASTEiJ_P0056944 Zfp106 protein_coding protein_coding MGP_CASTEiJ_T0056945.1 MGP_CASTEiJ_G0025550.1 mouse_genomes_project 2 122436984 122474299 - Zfp106 protein_coding retained_intron MGP_CASTEiJ_T0056946.1 MGP_CASTEiJ_G0025550.1 mouse_genomes_project 2 122437447 122439249 - Zfp106 protein_coding retained_intron MGP_CASTEiJ_T0056947.1 MGP_CASTEiJ_G0025550.1 mouse_genomes_project 2 122439073 122442789 - MGP_CASTEiJ_P0056947 Zfp106 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056948.1 MGP_CASTEiJ_G0025550.1 mouse_genomes_project 2 122442616 122474328 - MGP_CASTEiJ_P0056948 Zfp106 protein_coding protein_coding MGP_CASTEiJ_T0056949.1 MGP_CASTEiJ_G0025550.1 mouse_genomes_project 2 122445846 122464658 - MGP_CASTEiJ_P0056949 Zfp106 protein_coding protein_coding MGP_CASTEiJ_T0056950.1 MGP_CASTEiJ_G0025550.1 mouse_genomes_project 2 122445979 122474319 - Zfp106 protein_coding processed_transcript MGP_CASTEiJ_T0057586.1 MGP_CASTEiJ_G0025686.1 mouse_genomes_project 2 132880441 132988951 + MGP_CASTEiJ_P0057586 Ptpra protein_coding protein_coding MGP_CASTEiJ_T0057587.1 MGP_CASTEiJ_G0025686.1 mouse_genomes_project 2 132880707 132988948 + MGP_CASTEiJ_P0057587 Ptpra protein_coding protein_coding MGP_CASTEiJ_T0057588.1 MGP_CASTEiJ_G0025686.1 mouse_genomes_project 2 132937407 132988393 + MGP_CASTEiJ_P0057588 Ptpra protein_coding unknown_likely_coding MGP_CASTEiJ_T0055812.1 MGP_CASTEiJ_G0025290.1 mouse_genomes_project 2 90460754 90461796 - MGP_CASTEiJ_P0055812 protein_coding protein_coding MGP_CASTEiJ_T0017045.1 MGP_CASTEiJ_G0014746.1 mouse_genomes_project 2 77896502 77898375 - Gm13727 processed_transcript processed_transcript MGP_CASTEiJ_T0013102.1 MGP_CASTEiJ_G0011265.1 mouse_genomes_project 2 37836131 37836614 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099621.1 MGP_CASTEiJ_G0036534.1 mouse_genomes_project 2 15589703 15589808 + Gm25147 snRNA snRNA MGP_CASTEiJ_T0057706.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134006068 134037624 + MGP_CASTEiJ_P0057706 Smox protein_coding protein_coding MGP_CASTEiJ_T0057707.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134006336 134042614 + MGP_CASTEiJ_P0057707 Smox protein_coding protein_coding MGP_CASTEiJ_T0057708.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134006495 134037663 + MGP_CASTEiJ_P0057708 Smox protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057709.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134006515 134042603 + Smox protein_coding retained_intron MGP_CASTEiJ_T0057710.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134006515 134042603 + MGP_CASTEiJ_P0057710 Smox protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057711.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134006515 134042603 + MGP_CASTEiJ_P0057711 Smox protein_coding protein_coding MGP_CASTEiJ_T0057712.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134006515 134042603 + MGP_CASTEiJ_P0057712 Smox protein_coding protein_coding MGP_CASTEiJ_T0057713.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134006515 134042603 + MGP_CASTEiJ_P0057713 Smox protein_coding protein_coding MGP_CASTEiJ_T0057714.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134006515 134042603 + MGP_CASTEiJ_P0057714 Smox protein_coding protein_coding MGP_CASTEiJ_T0057715.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134006515 134042603 + MGP_CASTEiJ_P0057715 Smox protein_coding protein_coding MGP_CASTEiJ_T0057716.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134006515 134042603 + MGP_CASTEiJ_P0057716 Smox protein_coding protein_coding MGP_CASTEiJ_T0057717.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134006536 134043357 + MGP_CASTEiJ_P0057717 Smox protein_coding protein_coding MGP_CASTEiJ_T0057718.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134006565 134042598 + MGP_CASTEiJ_P0057718 Smox protein_coding protein_coding MGP_CASTEiJ_T0057719.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134006589 134047785 + MGP_CASTEiJ_P0057719 Smox protein_coding unknown_likely_coding MGP_CASTEiJ_T0057720.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134006836 134029506 + MGP_CASTEiJ_P0057720 Smox protein_coding protein_coding MGP_CASTEiJ_T0057721.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134026280 134029543 + Smox protein_coding processed_transcript MGP_CASTEiJ_T0057722.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134037566 134042310 + MGP_CASTEiJ_P0057722 Smox protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057723.1 MGP_CASTEiJ_G0025711.1 mouse_genomes_project 2 134039325 134042572 + Smox protein_coding retained_intron MGP_CASTEiJ_T0057397.1 MGP_CASTEiJ_G0025638.1 mouse_genomes_project 2 129652515 129656566 + MGP_CASTEiJ_P0057397 Adra2b protein_coding protein_coding MGP_CASTEiJ_T0057398.1 MGP_CASTEiJ_G0025638.1 mouse_genomes_project 2 129652593 129656566 + MGP_CASTEiJ_P0057398 Adra2b protein_coding protein_coding MGP_CASTEiJ_T0003937.1 MGP_CASTEiJ_G0003500.1 mouse_genomes_project 2 118546333 118577968 - Gm13990 antisense antisense MGP_CASTEiJ_T0055750.1 MGP_CASTEiJ_G0025240.1 mouse_genomes_project 2 89170019 89170931 + MGP_CASTEiJ_P0055750 Olfr1183 protein_coding protein_coding MGP_CASTEiJ_T0011168.1 MGP_CASTEiJ_G0009356.1 mouse_genomes_project 2 43681528 43681605 + Gm27645 misc_RNA misc_RNA MGP_CASTEiJ_T0054416.1 MGP_CASTEiJ_G0024895.1 mouse_genomes_project 2 35996888 36025237 + MGP_CASTEiJ_P0054416 Crb2 protein_coding protein_coding MGP_CASTEiJ_T0054417.1 MGP_CASTEiJ_G0024895.1 mouse_genomes_project 2 36015774 36018127 + MGP_CASTEiJ_P0054417 Crb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054418.1 MGP_CASTEiJ_G0024895.1 mouse_genomes_project 2 36021307 36022748 + Crb2 protein_coding processed_transcript MGP_CASTEiJ_T0007087.1 MGP_CASTEiJ_G0005827.1 mouse_genomes_project 2 100520580 100521064 - Gm29235 lincRNA lincRNA MGP_CASTEiJ_T0055661.1 MGP_CASTEiJ_G0025163.1 mouse_genomes_project 2 86923021 86923963 - MGP_CASTEiJ_P0055661 protein_coding protein_coding MGP_CASTEiJ_T0001043.1 MGP_CASTEiJ_G0000979.1 mouse_genomes_project 2 79061328 79190713 + TEC TEC MGP_CASTEiJ_T0100850.1 MGP_CASTEiJ_G0037763.1 mouse_genomes_project 2 8266985 8267114 - Gm23877 snoRNA snoRNA MGP_CASTEiJ_T0007205.1 MGP_CASTEiJ_G0005924.1 mouse_genomes_project 2 170486426 170487804 - Gm11467 lincRNA lincRNA MGP_CASTEiJ_T0054225.1 MGP_CASTEiJ_G0024839.1 mouse_genomes_project 2 33055824 33077991 - MGP_CASTEiJ_P0054225 Psmd5 protein_coding protein_coding MGP_CASTEiJ_T0054226.1 MGP_CASTEiJ_G0024839.1 mouse_genomes_project 2 33058221 33077962 - Psmd5 protein_coding retained_intron MGP_CASTEiJ_T0054227.1 MGP_CASTEiJ_G0024839.1 mouse_genomes_project 2 33058562 33063813 - MGP_CASTEiJ_P0054227 Psmd5 protein_coding protein_coding MGP_CASTEiJ_T0054228.1 MGP_CASTEiJ_G0024839.1 mouse_genomes_project 2 33073966 33082041 - Psmd5 protein_coding processed_transcript MGP_CASTEiJ_T0054229.1 MGP_CASTEiJ_G0024839.1 mouse_genomes_project 2 33078136 33079245 - Psmd5 protein_coding processed_transcript MGP_CASTEiJ_T0013017.1 MGP_CASTEiJ_G0011180.1 mouse_genomes_project 2 6453798 6454230 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055867.1 MGP_CASTEiJ_G0025318.1 mouse_genomes_project 2 91618148 91658911 + MGP_CASTEiJ_P0055867 Agbl2 protein_coding protein_coding MGP_CASTEiJ_T0055868.1 MGP_CASTEiJ_G0025318.1 mouse_genomes_project 2 91618148 91682461 + MGP_CASTEiJ_P0055868 Agbl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055869.1 MGP_CASTEiJ_G0025318.1 mouse_genomes_project 2 91618149 91652317 + MGP_CASTEiJ_P0055869 Agbl2 protein_coding protein_coding MGP_CASTEiJ_T0055870.1 MGP_CASTEiJ_G0025318.1 mouse_genomes_project 2 91618165 91657890 + MGP_CASTEiJ_P0055870 Agbl2 protein_coding protein_coding MGP_CASTEiJ_T0055871.1 MGP_CASTEiJ_G0025318.1 mouse_genomes_project 2 91618645 91655930 + MGP_CASTEiJ_P0055871 Agbl2 protein_coding protein_coding MGP_CASTEiJ_T0055872.1 MGP_CASTEiJ_G0025318.1 mouse_genomes_project 2 91618672 91672566 + Agbl2 protein_coding processed_transcript MGP_CASTEiJ_T0055873.1 MGP_CASTEiJ_G0025318.1 mouse_genomes_project 2 91618980 91657890 + MGP_CASTEiJ_P0055873 Agbl2 protein_coding protein_coding MGP_CASTEiJ_T0055874.1 MGP_CASTEiJ_G0025318.1 mouse_genomes_project 2 91619467 91635478 + Agbl2 protein_coding processed_transcript MGP_CASTEiJ_T0055875.1 MGP_CASTEiJ_G0025318.1 mouse_genomes_project 2 91646144 91657173 + MGP_CASTEiJ_P0055875 Agbl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055192.1 MGP_CASTEiJ_G0025026.1 mouse_genomes_project 2 72147145 72157880 + MGP_CASTEiJ_P0055192 Cdca7 protein_coding protein_coding MGP_CASTEiJ_T0055193.1 MGP_CASTEiJ_G0025026.1 mouse_genomes_project 2 72147239 72153467 + MGP_CASTEiJ_P0055193 Cdca7 protein_coding protein_coding MGP_CASTEiJ_T0055194.1 MGP_CASTEiJ_G0025026.1 mouse_genomes_project 2 72147376 72152848 + Cdca7 protein_coding processed_transcript MGP_CASTEiJ_T0055195.1 MGP_CASTEiJ_G0025026.1 mouse_genomes_project 2 72154533 72155707 + Cdca7 protein_coding processed_transcript MGP_CASTEiJ_T0055196.1 MGP_CASTEiJ_G0025026.1 mouse_genomes_project 2 72156074 72157182 + Cdca7 protein_coding processed_transcript MGP_CASTEiJ_T0013275.1 MGP_CASTEiJ_G0011438.1 mouse_genomes_project 2 105013327 105014059 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055735.1 MGP_CASTEiJ_G0025226.1 mouse_genomes_project 2 88550904 88552051 - MGP_CASTEiJ_P0055735 protein_coding protein_coding MGP_CASTEiJ_T0004006.1 MGP_CASTEiJ_G0003553.1 mouse_genomes_project 2 159144443 159154306 - Acss2os antisense antisense MGP_CASTEiJ_T0013177.1 MGP_CASTEiJ_G0011340.1 mouse_genomes_project 2 70155940 70156189 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055401.1 MGP_CASTEiJ_G0025069.1 mouse_genomes_project 2 78951803 78955536 + MGP_CASTEiJ_P0055401 Ube2e3 protein_coding protein_coding MGP_CASTEiJ_T0055402.1 MGP_CASTEiJ_G0025069.1 mouse_genomes_project 2 78951898 79002839 + MGP_CASTEiJ_P0055402 Ube2e3 protein_coding protein_coding MGP_CASTEiJ_T0055403.1 MGP_CASTEiJ_G0025069.1 mouse_genomes_project 2 78952710 79011685 + MGP_CASTEiJ_P0055403 Ube2e3 protein_coding protein_coding MGP_CASTEiJ_T0055404.1 MGP_CASTEiJ_G0025069.1 mouse_genomes_project 2 78952903 79003651 + Ube2e3 protein_coding retained_intron MGP_CASTEiJ_T0055405.1 MGP_CASTEiJ_G0025069.1 mouse_genomes_project 2 78952997 78957742 + Ube2e3 protein_coding retained_intron MGP_CASTEiJ_T0055406.1 MGP_CASTEiJ_G0025069.1 mouse_genomes_project 2 78954663 79010689 + MGP_CASTEiJ_P0055406 Ube2e3 protein_coding protein_coding MGP_CASTEiJ_T0055407.1 MGP_CASTEiJ_G0025069.1 mouse_genomes_project 2 79008785 79010444 + Ube2e3 protein_coding retained_intron MGP_CASTEiJ_T0013234.1 MGP_CASTEiJ_G0011397.1 mouse_genomes_project 2 88058176 88059736 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013170.1 MGP_CASTEiJ_G0011333.1 mouse_genomes_project 2 66248607 66249100 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006956.1 MGP_CASTEiJ_G0005723.1 mouse_genomes_project 2 8615130 8620428 + Gm13293 lincRNA lincRNA MGP_CASTEiJ_T0003931.1 MGP_CASTEiJ_G0003498.1 mouse_genomes_project 2 115629712 115638940 + C130080G10Rik antisense antisense MGP_CASTEiJ_T0003932.1 MGP_CASTEiJ_G0003498.1 mouse_genomes_project 2 115629773 115638917 + C130080G10Rik antisense antisense MGP_CASTEiJ_T0003933.1 MGP_CASTEiJ_G0003498.1 mouse_genomes_project 2 115630623 115638403 + C130080G10Rik antisense antisense MGP_CASTEiJ_T0003934.1 MGP_CASTEiJ_G0003498.1 mouse_genomes_project 2 115633253 115638709 + C130080G10Rik antisense antisense MGP_CASTEiJ_T0003935.1 MGP_CASTEiJ_G0003498.1 mouse_genomes_project 2 115633278 115642483 + C130080G10Rik antisense antisense MGP_CASTEiJ_T0010113.1 MGP_CASTEiJ_G0008301.1 mouse_genomes_project 2 28214601 28214697 + miRNA miRNA MGP_CASTEiJ_T0013367.1 MGP_CASTEiJ_G0011530.1 mouse_genomes_project 2 146146232 146147083 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055761.1 MGP_CASTEiJ_G0025250.1 mouse_genomes_project 2 89503629 89504556 - MGP_CASTEiJ_P0055761 Olfr1198 protein_coding protein_coding MGP_CASTEiJ_T0102248.1 MGP_CASTEiJ_G0038973.1 mouse_genomes_project 2 121117624 121117865 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0057136.1 MGP_CASTEiJ_G0025579.1 mouse_genomes_project 2 123509918 123545211 + MGP_CASTEiJ_P0057136 Wdr76 protein_coding protein_coding MGP_CASTEiJ_T0013087.1 MGP_CASTEiJ_G0011250.1 mouse_genomes_project 2 34397385 34397750 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053093.1 MGP_CASTEiJ_G0024658.1 mouse_genomes_project 2 23180670 23185622 - MGP_CASTEiJ_P0053093 Fcna protein_coding protein_coding MGP_CASTEiJ_T0053094.1 MGP_CASTEiJ_G0024658.1 mouse_genomes_project 2 23180972 23183266 - Fcna protein_coding processed_transcript MGP_CASTEiJ_T0003905.1 MGP_CASTEiJ_G0003482.1 mouse_genomes_project 2 85498474 85500187 + Gm13716 antisense antisense MGP_CASTEiJ_T0017167.1 MGP_CASTEiJ_G0014805.1 mouse_genomes_project 2 171562814 171571137 + processed_transcript processed_transcript MGP_CASTEiJ_T0017168.1 MGP_CASTEiJ_G0014805.1 mouse_genomes_project 2 171563219 171571398 + processed_transcript processed_transcript MGP_CASTEiJ_T0017169.1 MGP_CASTEiJ_G0014805.1 mouse_genomes_project 2 171563773 171571681 + processed_transcript processed_transcript MGP_CASTEiJ_T0102242.1 MGP_CASTEiJ_G0038967.1 mouse_genomes_project 2 89239703 89240609 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013209.1 MGP_CASTEiJ_G0011372.1 mouse_genomes_project 2 81085316 81085931 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053058.1 MGP_CASTEiJ_G0024651.1 mouse_genomes_project 2 23112132 23116352 + MGP_CASTEiJ_P0053058 Edf1 protein_coding protein_coding MGP_CASTEiJ_T0053059.1 MGP_CASTEiJ_G0024651.1 mouse_genomes_project 2 23112156 23115632 + Edf1 protein_coding processed_transcript MGP_CASTEiJ_T0053060.1 MGP_CASTEiJ_G0024651.1 mouse_genomes_project 2 23112182 23115536 + Edf1 protein_coding processed_transcript MGP_CASTEiJ_T0053061.1 MGP_CASTEiJ_G0024651.1 mouse_genomes_project 2 23112424 23116131 + Edf1 protein_coding processed_transcript MGP_CASTEiJ_T0053062.1 MGP_CASTEiJ_G0024651.1 mouse_genomes_project 2 23114856 23116352 + Edf1 protein_coding processed_transcript MGP_CASTEiJ_T0000989.1 MGP_CASTEiJ_G0000925.1 mouse_genomes_project 2 8820256 8822096 - TEC TEC MGP_CASTEiJ_T0013284.1 MGP_CASTEiJ_G0011447.1 mouse_genomes_project 2 106168865 106169209 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056001.1 MGP_CASTEiJ_G0025334.1 mouse_genomes_project 2 92150135 92163631 + MGP_CASTEiJ_P0056001 Arfgap2 protein_coding protein_coding MGP_CASTEiJ_T0056002.1 MGP_CASTEiJ_G0025334.1 mouse_genomes_project 2 92150454 92163631 + MGP_CASTEiJ_P0056002 Arfgap2 protein_coding protein_coding MGP_CASTEiJ_T0056003.1 MGP_CASTEiJ_G0025334.1 mouse_genomes_project 2 92150485 92151710 + Arfgap2 protein_coding retained_intron MGP_CASTEiJ_T0056004.1 MGP_CASTEiJ_G0025334.1 mouse_genomes_project 2 92150495 92153924 + Arfgap2 protein_coding retained_intron MGP_CASTEiJ_T0056005.1 MGP_CASTEiJ_G0025334.1 mouse_genomes_project 2 92150863 92152553 + Arfgap2 protein_coding processed_transcript MGP_CASTEiJ_T0056006.1 MGP_CASTEiJ_G0025334.1 mouse_genomes_project 2 92154513 92158769 + Arfgap2 protein_coding retained_intron MGP_CASTEiJ_T0056007.1 MGP_CASTEiJ_G0025334.1 mouse_genomes_project 2 92155263 92159287 + Arfgap2 protein_coding retained_intron MGP_CASTEiJ_T0099639.1 MGP_CASTEiJ_G0036552.1 mouse_genomes_project 2 71091593 71091697 + Gm23253 snRNA snRNA MGP_CASTEiJ_T0100919.1 MGP_CASTEiJ_G0037832.1 mouse_genomes_project 2 159256174 159256307 - Gm22334 snoRNA snoRNA MGP_CASTEiJ_T0003769.1 MGP_CASTEiJ_G0003379.1 mouse_genomes_project 2 3293688 3424807 + A230108P19Rik antisense antisense MGP_CASTEiJ_T0056580.1 MGP_CASTEiJ_G0025472.1 mouse_genomes_project 2 113880154 113915249 + MGP_CASTEiJ_P0056580 Katnbl1 protein_coding protein_coding MGP_CASTEiJ_T0056581.1 MGP_CASTEiJ_G0025472.1 mouse_genomes_project 2 113880169 113908506 + Katnbl1 protein_coding retained_intron MGP_CASTEiJ_T0056411.1 MGP_CASTEiJ_G0025408.1 mouse_genomes_project 2 106120140 106139184 - MGP_CASTEiJ_P0056411 Prrg4 protein_coding protein_coding MGP_CASTEiJ_T0056412.1 MGP_CASTEiJ_G0025408.1 mouse_genomes_project 2 106128666 106138801 - MGP_CASTEiJ_P0056412 Prrg4 protein_coding protein_coding MGP_CASTEiJ_T0055641.1 MGP_CASTEiJ_G0025143.1 mouse_genomes_project 2 86414489 86415441 + MGP_CASTEiJ_P0055641 Olfr1032 protein_coding protein_coding MGP_CASTEiJ_T0055632.1 MGP_CASTEiJ_G0025135.1 mouse_genomes_project 2 86262918 86263866 + MGP_CASTEiJ_P0055632 Olfr1022 protein_coding protein_coding MGP_CASTEiJ_T0057960.1 MGP_CASTEiJ_G0025766.1 mouse_genomes_project 2 147526848 147586700 - MGP_CASTEiJ_P0057960 Dzank1 protein_coding protein_coding MGP_CASTEiJ_T0057961.1 MGP_CASTEiJ_G0025766.1 mouse_genomes_project 2 147526850 147586716 - MGP_CASTEiJ_P0057961 Dzank1 protein_coding protein_coding MGP_CASTEiJ_T0057962.1 MGP_CASTEiJ_G0025766.1 mouse_genomes_project 2 147568378 147586666 - Dzank1 protein_coding retained_intron MGP_CASTEiJ_T0057963.1 MGP_CASTEiJ_G0025766.1 mouse_genomes_project 2 147581772 147585950 - Dzank1 protein_coding processed_transcript MGP_CASTEiJ_T0058242.1 MGP_CASTEiJ_G0025851.1 mouse_genomes_project 2 155947241 155947969 - MGP_CASTEiJ_P0058242 Defb25 protein_coding protein_coding MGP_CASTEiJ_T0010176.1 MGP_CASTEiJ_G0008364.1 mouse_genomes_project 2 133522811 133522891 - Mir6973b miRNA miRNA MGP_CASTEiJ_T0007224.1 MGP_CASTEiJ_G0005939.1 mouse_genomes_project 2 173550137 173550940 - Gm14260 lincRNA lincRNA MGP_CASTEiJ_T0102215.1 MGP_CASTEiJ_G0038940.1 mouse_genomes_project 2 85966654 85972028 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0055732.1 MGP_CASTEiJ_G0025223.1 mouse_genomes_project 2 88514922 88515879 - MGP_CASTEiJ_P0055732 Olfr74 protein_coding protein_coding MGP_CASTEiJ_T0001037.1 MGP_CASTEiJ_G0000973.1 mouse_genomes_project 2 68286020 68289253 + TEC TEC MGP_CASTEiJ_T0056272.1 MGP_CASTEiJ_G0025380.1 mouse_genomes_project 2 103053100 103301821 - MGP_CASTEiJ_P0056272 Ldlrad3 protein_coding protein_coding MGP_CASTEiJ_T0056273.1 MGP_CASTEiJ_G0025380.1 mouse_genomes_project 2 103053100 103301848 - MGP_CASTEiJ_P0056273 Ldlrad3 protein_coding protein_coding MGP_CASTEiJ_T0056274.1 MGP_CASTEiJ_G0025380.1 mouse_genomes_project 2 103221214 103248343 - Ldlrad3 protein_coding processed_transcript MGP_CASTEiJ_T0055789.1 MGP_CASTEiJ_G0025275.1 mouse_genomes_project 2 90083843 90084862 - MGP_CASTEiJ_P0055789 Olfr1229 protein_coding protein_coding MGP_CASTEiJ_T0055790.1 MGP_CASTEiJ_G0025275.1 mouse_genomes_project 2 90083900 90089670 - MGP_CASTEiJ_P0055790 Olfr1229 protein_coding protein_coding MGP_CASTEiJ_T0053652.1 MGP_CASTEiJ_G0024759.1 mouse_genomes_project 2 28119614 28143159 + MGP_CASTEiJ_P0053652 Gm28038 protein_coding protein_coding MGP_CASTEiJ_T0059229.1 MGP_CASTEiJ_G0026069.1 mouse_genomes_project 2 169615193 169623575 - MGP_CASTEiJ_P0059229 Ocstamp protein_coding protein_coding MGP_CASTEiJ_T0098573.1 MGP_CASTEiJ_G0035504.1 mouse_genomes_project 2 94438244 94438347 - Gm23380 rRNA rRNA MGP_CASTEiJ_T0053809.1 MGP_CASTEiJ_G0024779.1 mouse_genomes_project 2 29091948 29164158 + MGP_CASTEiJ_P0053809 Gpr107 protein_coding protein_coding MGP_CASTEiJ_T0053810.1 MGP_CASTEiJ_G0024779.1 mouse_genomes_project 2 29091965 29110813 + Gpr107 protein_coding retained_intron MGP_CASTEiJ_T0053811.1 MGP_CASTEiJ_G0024779.1 mouse_genomes_project 2 29091983 29135272 + Gpr107 protein_coding retained_intron MGP_CASTEiJ_T0053812.1 MGP_CASTEiJ_G0024779.1 mouse_genomes_project 2 29091983 29095233 + Gpr107 protein_coding retained_intron MGP_CASTEiJ_T0053813.1 MGP_CASTEiJ_G0024779.1 mouse_genomes_project 2 29115366 29128030 + Gpr107 protein_coding processed_transcript MGP_CASTEiJ_T0053814.1 MGP_CASTEiJ_G0024779.1 mouse_genomes_project 2 29128457 29154506 + Gpr107 protein_coding retained_intron MGP_CASTEiJ_T0053815.1 MGP_CASTEiJ_G0024779.1 mouse_genomes_project 2 29128787 29131922 + Gpr107 protein_coding processed_transcript MGP_CASTEiJ_T0053816.1 MGP_CASTEiJ_G0024779.1 mouse_genomes_project 2 29131940 29154688 + Gpr107 protein_coding retained_intron MGP_CASTEiJ_T0053817.1 MGP_CASTEiJ_G0024779.1 mouse_genomes_project 2 29142294 29153056 + Gpr107 protein_coding processed_transcript MGP_CASTEiJ_T0053818.1 MGP_CASTEiJ_G0024779.1 mouse_genomes_project 2 29151992 29155417 + Gpr107 protein_coding retained_intron MGP_CASTEiJ_T0053819.1 MGP_CASTEiJ_G0024779.1 mouse_genomes_project 2 29155454 29159959 + Gpr107 protein_coding retained_intron MGP_CASTEiJ_T0056812.1 MGP_CASTEiJ_G0025530.1 mouse_genomes_project 2 121524715 121532848 - MGP_CASTEiJ_P0056812 Ndufaf1 protein_coding protein_coding MGP_CASTEiJ_T0056813.1 MGP_CASTEiJ_G0025530.1 mouse_genomes_project 2 121530411 121532823 - Ndufaf1 protein_coding processed_transcript MGP_CASTEiJ_T0056814.1 MGP_CASTEiJ_G0025530.1 mouse_genomes_project 2 121530591 121532838 - Ndufaf1 protein_coding processed_transcript MGP_CASTEiJ_T0003808.1 MGP_CASTEiJ_G0003410.1 mouse_genomes_project 2 24824381 24870801 + Sardhos antisense antisense MGP_CASTEiJ_T0056674.1 MGP_CASTEiJ_G0025495.1 mouse_genomes_project 2 120060433 120162224 - MGP_CASTEiJ_P0056674 Gpr176 protein_coding protein_coding MGP_CASTEiJ_T0013117.1 MGP_CASTEiJ_G0011280.1 mouse_genomes_project 2 46789530 46789963 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001012.1 MGP_CASTEiJ_G0000948.1 mouse_genomes_project 2 12903829 12905575 + TEC TEC MGP_CASTEiJ_T0100856.1 MGP_CASTEiJ_G0037769.1 mouse_genomes_project 2 24262279 24262406 - Snora43 snoRNA snoRNA MGP_CASTEiJ_T0013352.1 MGP_CASTEiJ_G0011515.1 mouse_genomes_project 2 135602965 135603963 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013070.1 MGP_CASTEiJ_G0011233.1 mouse_genomes_project 2 24179510 24180080 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055768.1 MGP_CASTEiJ_G0025257.1 mouse_genomes_project 2 89742713 89743649 - MGP_CASTEiJ_P0055768 Olfr1211 protein_coding protein_coding MGP_CASTEiJ_T0052568.1 MGP_CASTEiJ_G0024566.1 mouse_genomes_project 2 15403794 15404257 - MGP_CASTEiJ_P0052568 H2afb1 protein_coding protein_coding MGP_CASTEiJ_T0098373.1 MGP_CASTEiJ_G0035304.1 mouse_genomes_project 2 95048408 95049157 - pseudogene pseudogene MGP_CASTEiJ_T0059620.1 MGP_CASTEiJ_G0026161.1 mouse_genomes_project 2 182886810 182891839 - MGP_CASTEiJ_P0059620 Hrh3 protein_coding protein_coding MGP_CASTEiJ_T0059621.1 MGP_CASTEiJ_G0026161.1 mouse_genomes_project 2 182886996 182891502 - MGP_CASTEiJ_P0059621 Hrh3 protein_coding protein_coding MGP_CASTEiJ_T0059622.1 MGP_CASTEiJ_G0026161.1 mouse_genomes_project 2 182887223 182891502 - MGP_CASTEiJ_P0059622 Hrh3 protein_coding protein_coding MGP_CASTEiJ_T0059623.1 MGP_CASTEiJ_G0026161.1 mouse_genomes_project 2 182887223 182891502 - MGP_CASTEiJ_P0059623 Hrh3 protein_coding protein_coding MGP_CASTEiJ_T0059624.1 MGP_CASTEiJ_G0026161.1 mouse_genomes_project 2 182887625 182891525 - MGP_CASTEiJ_P0059624 Hrh3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059625.1 MGP_CASTEiJ_G0026161.1 mouse_genomes_project 2 182887842 182891502 - MGP_CASTEiJ_P0059625 Hrh3 protein_coding protein_coding MGP_CASTEiJ_T0059626.1 MGP_CASTEiJ_G0026161.1 mouse_genomes_project 2 182887842 182891502 - MGP_CASTEiJ_P0059626 Hrh3 protein_coding protein_coding MGP_CASTEiJ_T0059627.1 MGP_CASTEiJ_G0026161.1 mouse_genomes_project 2 182888330 182890687 - Hrh3 protein_coding retained_intron MGP_CASTEiJ_T0054701.1 MGP_CASTEiJ_G0024943.1 mouse_genomes_project 2 56998128 57006001 - MGP_CASTEiJ_P0054701 Ermn protein_coding protein_coding MGP_CASTEiJ_T0013224.1 MGP_CASTEiJ_G0011387.1 mouse_genomes_project 2 86190992 86191188 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056560.1 MGP_CASTEiJ_G0025462.1 mouse_genomes_project 2 113503404 113504343 - MGP_CASTEiJ_P0056560 protein_coding protein_coding MGP_CASTEiJ_T0054663.1 MGP_CASTEiJ_G0024934.1 mouse_genomes_project 2 51760324 52067918 + MGP_CASTEiJ_P0054663 Fmnl2 protein_coding protein_coding MGP_CASTEiJ_T0054664.1 MGP_CASTEiJ_G0024934.1 mouse_genomes_project 2 51760332 52068315 + MGP_CASTEiJ_P0054664 Fmnl2 protein_coding protein_coding MGP_CASTEiJ_T0054665.1 MGP_CASTEiJ_G0024934.1 mouse_genomes_project 2 51760332 52065991 + MGP_CASTEiJ_P0054665 Fmnl2 protein_coding protein_coding MGP_CASTEiJ_T0054666.1 MGP_CASTEiJ_G0024934.1 mouse_genomes_project 2 51760575 52066342 + MGP_CASTEiJ_P0054666 Fmnl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054667.1 MGP_CASTEiJ_G0024934.1 mouse_genomes_project 2 51760607 52061558 + MGP_CASTEiJ_P0054667 Fmnl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054668.1 MGP_CASTEiJ_G0024934.1 mouse_genomes_project 2 52045165 52067918 + MGP_CASTEiJ_P0054668 Fmnl2 protein_coding protein_coding MGP_CASTEiJ_T0054669.1 MGP_CASTEiJ_G0024934.1 mouse_genomes_project 2 52053000 52067918 + MGP_CASTEiJ_P0054669 Fmnl2 protein_coding protein_coding MGP_CASTEiJ_T0054670.1 MGP_CASTEiJ_G0024934.1 mouse_genomes_project 2 52058759 52066316 + MGP_CASTEiJ_P0054670 Fmnl2 protein_coding protein_coding MGP_CASTEiJ_T0057833.1 MGP_CASTEiJ_G0025736.1 mouse_genomes_project 2 138782779 138790001 + MGP_CASTEiJ_P0057833 Lamp5 protein_coding protein_coding MGP_CASTEiJ_T0057834.1 MGP_CASTEiJ_G0025736.1 mouse_genomes_project 2 138788395 138801749 + MGP_CASTEiJ_P0057834 Lamp5 protein_coding protein_coding MGP_CASTEiJ_T0057835.1 MGP_CASTEiJ_G0025736.1 mouse_genomes_project 2 138788720 138791963 + Lamp5 protein_coding retained_intron MGP_CASTEiJ_T0057836.1 MGP_CASTEiJ_G0025736.1 mouse_genomes_project 2 138788720 138789684 + Lamp5 protein_coding processed_transcript MGP_CASTEiJ_T0057837.1 MGP_CASTEiJ_G0025736.1 mouse_genomes_project 2 138789900 138801737 + Lamp5 protein_coding processed_transcript MGP_CASTEiJ_T0099667.1 MGP_CASTEiJ_G0036580.1 mouse_genomes_project 2 151072961 151073068 - Gm25516 snRNA snRNA MGP_CASTEiJ_T0058484.1 MGP_CASTEiJ_G0025914.1 mouse_genomes_project 2 159083776 159111017 - MGP_CASTEiJ_P0058484 Ggt7 protein_coding protein_coding MGP_CASTEiJ_T0058485.1 MGP_CASTEiJ_G0025914.1 mouse_genomes_project 2 159083777 159110966 - MGP_CASTEiJ_P0058485 Ggt7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058486.1 MGP_CASTEiJ_G0025914.1 mouse_genomes_project 2 159088295 159092713 - Ggt7 protein_coding retained_intron MGP_CASTEiJ_T0058487.1 MGP_CASTEiJ_G0025914.1 mouse_genomes_project 2 159089364 159099332 - Ggt7 protein_coding retained_intron MGP_CASTEiJ_T0058488.1 MGP_CASTEiJ_G0025914.1 mouse_genomes_project 2 159094313 159103161 - MGP_CASTEiJ_P0058488 Ggt7 protein_coding protein_coding MGP_CASTEiJ_T0058489.1 MGP_CASTEiJ_G0025914.1 mouse_genomes_project 2 159100971 159114686 - MGP_CASTEiJ_P0058489 Ggt7 protein_coding protein_coding MGP_CASTEiJ_T0059029.1 MGP_CASTEiJ_G0026014.1 mouse_genomes_project 2 168179039 168197504 + MGP_CASTEiJ_P0059029 Stk4 protein_coding protein_coding MGP_CASTEiJ_T0059030.1 MGP_CASTEiJ_G0026014.1 mouse_genomes_project 2 168183761 168279202 + MGP_CASTEiJ_P0059030 Stk4 protein_coding protein_coding MGP_CASTEiJ_T0059031.1 MGP_CASTEiJ_G0026014.1 mouse_genomes_project 2 168191229 168208328 + Stk4 protein_coding processed_transcript MGP_CASTEiJ_T0059032.1 MGP_CASTEiJ_G0026014.1 mouse_genomes_project 2 168211020 168230329 + MGP_CASTEiJ_P0059032 Stk4 protein_coding protein_coding MGP_CASTEiJ_T0059033.1 MGP_CASTEiJ_G0026014.1 mouse_genomes_project 2 168221552 168279202 + MGP_CASTEiJ_P0059033 Stk4 protein_coding protein_coding MGP_CASTEiJ_T0102230.1 MGP_CASTEiJ_G0038955.1 mouse_genomes_project 2 86977677 86979214 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0007070.1 MGP_CASTEiJ_G0005814.1 mouse_genomes_project 2 92113513 92115644 + lincRNA lincRNA MGP_CASTEiJ_T0011175.1 MGP_CASTEiJ_G0009363.1 mouse_genomes_project 2 78622347 78622577 - Gm23149 misc_RNA misc_RNA MGP_CASTEiJ_T0006989.1 MGP_CASTEiJ_G0005747.1 mouse_genomes_project 2 31850426 31852967 - 9430024E24Rik lincRNA lincRNA MGP_CASTEiJ_T0098755.1 MGP_CASTEiJ_G0035686.1 mouse_genomes_project 2 176109998 176110262 - Gm26489 scaRNA scaRNA MGP_CASTEiJ_T0013393.1 MGP_CASTEiJ_G0011556.1 mouse_genomes_project 2 153715168 153715965 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007175.1 MGP_CASTEiJ_G0005897.1 mouse_genomes_project 2 155016907 155019308 - 4930556L07Rik lincRNA lincRNA MGP_CASTEiJ_T0007185.1 MGP_CASTEiJ_G0005906.1 mouse_genomes_project 2 160518752 160525677 - Gm14230 lincRNA lincRNA MGP_CASTEiJ_T0007186.1 MGP_CASTEiJ_G0005906.1 mouse_genomes_project 2 160523685 160525749 - Gm14230 lincRNA lincRNA MGP_CASTEiJ_T0007187.1 MGP_CASTEiJ_G0005906.1 mouse_genomes_project 2 160524328 160525657 - Gm14230 lincRNA lincRNA MGP_CASTEiJ_T0057870.1 MGP_CASTEiJ_G0025744.1 mouse_genomes_project 2 142332772 142477175 + MGP_CASTEiJ_P0057870 Sptlc3 protein_coding protein_coding MGP_CASTEiJ_T0057871.1 MGP_CASTEiJ_G0025744.1 mouse_genomes_project 2 142332779 142477792 + MGP_CASTEiJ_P0057871 Sptlc3 protein_coding protein_coding MGP_CASTEiJ_T0059574.1 MGP_CASTEiJ_G0026150.1 mouse_genomes_project 2 180813945 181053034 + MGP_CASTEiJ_P0059574 Phactr3 protein_coding protein_coding MGP_CASTEiJ_T0059575.1 MGP_CASTEiJ_G0026150.1 mouse_genomes_project 2 180814150 181051063 + MGP_CASTEiJ_P0059575 Phactr3 protein_coding protein_coding MGP_CASTEiJ_T0059576.1 MGP_CASTEiJ_G0026150.1 mouse_genomes_project 2 180838977 181050093 + MGP_CASTEiJ_P0059576 Phactr3 protein_coding protein_coding MGP_CASTEiJ_T0059577.1 MGP_CASTEiJ_G0026150.1 mouse_genomes_project 2 180873119 181051063 + MGP_CASTEiJ_P0059577 Phactr3 protein_coding protein_coding MGP_CASTEiJ_T0059578.1 MGP_CASTEiJ_G0026150.1 mouse_genomes_project 2 181042122 181046327 + Phactr3 protein_coding retained_intron MGP_CASTEiJ_T0059579.1 MGP_CASTEiJ_G0026150.1 mouse_genomes_project 2 181042358 181047391 + Phactr3 protein_coding retained_intron MGP_CASTEiJ_T0055153.1 MGP_CASTEiJ_G0025020.1 mouse_genomes_project 2 71127094 71132992 + MGP_CASTEiJ_P0055153 Dlx1 protein_coding protein_coding MGP_CASTEiJ_T0055154.1 MGP_CASTEiJ_G0025020.1 mouse_genomes_project 2 71127664 71129047 + MGP_CASTEiJ_P0055154 Dlx1 protein_coding protein_coding MGP_CASTEiJ_T0055155.1 MGP_CASTEiJ_G0025020.1 mouse_genomes_project 2 71128082 71129213 + MGP_CASTEiJ_P0055155 Dlx1 protein_coding protein_coding MGP_CASTEiJ_T0055156.1 MGP_CASTEiJ_G0025020.1 mouse_genomes_project 2 71128834 71131532 + MGP_CASTEiJ_P0055156 Dlx1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055157.1 MGP_CASTEiJ_G0025020.1 mouse_genomes_project 2 71128928 71132993 + Dlx1 protein_coding retained_intron MGP_CASTEiJ_T0055158.1 MGP_CASTEiJ_G0025020.1 mouse_genomes_project 2 71129761 71131702 + Dlx1 protein_coding retained_intron MGP_CASTEiJ_T0056615.1 MGP_CASTEiJ_G0025484.1 mouse_genomes_project 2 115678010 115755368 - MGP_CASTEiJ_P0056615 Aqr protein_coding unknown_likely_coding MGP_CASTEiJ_T0056616.1 MGP_CASTEiJ_G0025484.1 mouse_genomes_project 2 115678646 115755402 - MGP_CASTEiJ_P0056616 Aqr protein_coding protein_coding MGP_CASTEiJ_T0056617.1 MGP_CASTEiJ_G0025484.1 mouse_genomes_project 2 115682932 115755341 - MGP_CASTEiJ_P0056617 Aqr protein_coding protein_coding MGP_CASTEiJ_T0056618.1 MGP_CASTEiJ_G0025484.1 mouse_genomes_project 2 115689909 115697009 - Aqr protein_coding processed_transcript MGP_CASTEiJ_T0056619.1 MGP_CASTEiJ_G0025484.1 mouse_genomes_project 2 115710814 115718938 - Aqr protein_coding processed_transcript MGP_CASTEiJ_T0056620.1 MGP_CASTEiJ_G0025484.1 mouse_genomes_project 2 115711195 115755310 - Aqr protein_coding processed_transcript MGP_CASTEiJ_T0056621.1 MGP_CASTEiJ_G0025484.1 mouse_genomes_project 2 115730586 115755401 - Aqr protein_coding processed_transcript MGP_CASTEiJ_T0056622.1 MGP_CASTEiJ_G0025484.1 mouse_genomes_project 2 115737486 115755401 - Aqr protein_coding processed_transcript MGP_CASTEiJ_T0056623.1 MGP_CASTEiJ_G0025484.1 mouse_genomes_project 2 115748959 115755479 - Aqr protein_coding processed_transcript MGP_CASTEiJ_T0000988.1 MGP_CASTEiJ_G0000924.1 mouse_genomes_project 2 8655585 8656705 - TEC TEC MGP_CASTEiJ_T0056398.1 MGP_CASTEiJ_G0025404.1 mouse_genomes_project 2 105937599 105968084 - Tcp11l1 protein_coding processed_transcript MGP_CASTEiJ_T0056401.1 MGP_CASTEiJ_G0025404.1 mouse_genomes_project 2 105961825 105993970 - MGP_CASTEiJ_P0056401 Tcp11l1 protein_coding protein_coding MGP_CASTEiJ_T0056402.1 MGP_CASTEiJ_G0025404.1 mouse_genomes_project 2 105963788 105993976 - MGP_CASTEiJ_P0056402 Tcp11l1 protein_coding protein_coding MGP_CASTEiJ_T0056403.1 MGP_CASTEiJ_G0025404.1 mouse_genomes_project 2 105968596 105993983 - Tcp11l1 protein_coding retained_intron MGP_CASTEiJ_T0056404.1 MGP_CASTEiJ_G0025404.1 mouse_genomes_project 2 105978370 105987471 - Tcp11l1 protein_coding processed_transcript MGP_CASTEiJ_T0056405.1 MGP_CASTEiJ_G0025404.1 mouse_genomes_project 2 105979914 105993907 - Tcp11l1 protein_coding processed_transcript MGP_CASTEiJ_T0056406.1 MGP_CASTEiJ_G0025404.1 mouse_genomes_project 2 105985979 105993980 - Tcp11l1 protein_coding processed_transcript MGP_CASTEiJ_T0003974.1 MGP_CASTEiJ_G0003527.1 mouse_genomes_project 2 137856979 137903108 - 4930545L23Rik antisense antisense MGP_CASTEiJ_T0013103.1 MGP_CASTEiJ_G0011266.1 mouse_genomes_project 2 37868378 37868970 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054692.1 MGP_CASTEiJ_G0024941.1 mouse_genomes_project 2 56151661 56289849 + Gpd2 protein_coding processed_transcript MGP_CASTEiJ_T0054693.1 MGP_CASTEiJ_G0024941.1 mouse_genomes_project 2 56151704 56292722 + MGP_CASTEiJ_P0054693 Gpd2 protein_coding protein_coding MGP_CASTEiJ_T0054694.1 MGP_CASTEiJ_G0024941.1 mouse_genomes_project 2 56152323 56292722 + MGP_CASTEiJ_P0054694 Gpd2 protein_coding protein_coding MGP_CASTEiJ_T0054695.1 MGP_CASTEiJ_G0024941.1 mouse_genomes_project 2 56152408 56292722 + MGP_CASTEiJ_P0054695 Gpd2 protein_coding protein_coding MGP_CASTEiJ_T0054696.1 MGP_CASTEiJ_G0024941.1 mouse_genomes_project 2 56158373 56224889 + Gpd2 protein_coding processed_transcript MGP_CASTEiJ_T0054697.1 MGP_CASTEiJ_G0024941.1 mouse_genomes_project 2 56179250 56182258 + Gpd2 protein_coding processed_transcript MGP_CASTEiJ_T0054698.1 MGP_CASTEiJ_G0024941.1 mouse_genomes_project 2 56181528 56182258 + Gpd2 protein_coding processed_transcript MGP_CASTEiJ_T0013405.1 MGP_CASTEiJ_G0011568.1 mouse_genomes_project 2 158266342 158266563 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055465.1 MGP_CASTEiJ_G0025081.1 mouse_genomes_project 2 80795989 80843814 + Gm4353 protein_coding retained_intron MGP_CASTEiJ_T0055467.1 MGP_CASTEiJ_G0025081.1 mouse_genomes_project 2 80822054 80843810 + MGP_CASTEiJ_P0055467 Gm4353 protein_coding protein_coding MGP_CASTEiJ_T0055468.1 MGP_CASTEiJ_G0025081.1 mouse_genomes_project 2 80822070 80840913 + MGP_CASTEiJ_P0055468 Gm4353 protein_coding protein_coding MGP_CASTEiJ_T0055469.1 MGP_CASTEiJ_G0025081.1 mouse_genomes_project 2 80822502 80829768 + Gm4353 protein_coding processed_transcript MGP_CASTEiJ_T0055470.1 MGP_CASTEiJ_G0025081.1 mouse_genomes_project 2 80827507 80838327 + Gm4353 protein_coding processed_transcript MGP_CASTEiJ_T0003910.1 MGP_CASTEiJ_G0003486.1 mouse_genomes_project 2 103145708 103174709 + Gm13919 antisense antisense MGP_CASTEiJ_T0003911.1 MGP_CASTEiJ_G0003486.1 mouse_genomes_project 2 103145716 103148342 + Gm13919 antisense antisense MGP_CASTEiJ_T0007030.1 MGP_CASTEiJ_G0005781.1 mouse_genomes_project 2 66471684 66510142 - Gm13598 lincRNA lincRNA MGP_CASTEiJ_T0056241.1 MGP_CASTEiJ_G0025374.1 mouse_genomes_project 2 102640352 102713762 - MGP_CASTEiJ_P0056241 B230118H07Rik protein_coding protein_coding MGP_CASTEiJ_T0056242.1 MGP_CASTEiJ_G0025374.1 mouse_genomes_project 2 102641376 102692844 - MGP_CASTEiJ_P0056242 B230118H07Rik protein_coding protein_coding MGP_CASTEiJ_T0056243.1 MGP_CASTEiJ_G0025374.1 mouse_genomes_project 2 102641700 102734295 - MGP_CASTEiJ_P0056243 B230118H07Rik protein_coding protein_coding MGP_CASTEiJ_T0056244.1 MGP_CASTEiJ_G0025374.1 mouse_genomes_project 2 102641700 102704489 - MGP_CASTEiJ_P0056244 B230118H07Rik protein_coding protein_coding MGP_CASTEiJ_T0056245.1 MGP_CASTEiJ_G0025374.1 mouse_genomes_project 2 102641700 102734295 - MGP_CASTEiJ_P0056245 B230118H07Rik protein_coding protein_coding MGP_CASTEiJ_T0056246.1 MGP_CASTEiJ_G0025374.1 mouse_genomes_project 2 102641701 102655503 - MGP_CASTEiJ_P0056246 B230118H07Rik protein_coding protein_coding MGP_CASTEiJ_T0056247.1 MGP_CASTEiJ_G0025374.1 mouse_genomes_project 2 102641802 102713714 - MGP_CASTEiJ_P0056247 B230118H07Rik protein_coding protein_coding MGP_CASTEiJ_T0056248.1 MGP_CASTEiJ_G0025374.1 mouse_genomes_project 2 102641806 102664122 - B230118H07Rik protein_coding processed_transcript MGP_CASTEiJ_T0056249.1 MGP_CASTEiJ_G0025374.1 mouse_genomes_project 2 102655412 102711560 - MGP_CASTEiJ_P0056249 B230118H07Rik protein_coding protein_coding MGP_CASTEiJ_T0056250.1 MGP_CASTEiJ_G0025374.1 mouse_genomes_project 2 102691634 102713781 - B230118H07Rik protein_coding retained_intron MGP_CASTEiJ_T0056251.1 MGP_CASTEiJ_G0025374.1 mouse_genomes_project 2 102692160 102704489 - B230118H07Rik protein_coding retained_intron MGP_CASTEiJ_T0056252.1 MGP_CASTEiJ_G0025374.1 mouse_genomes_project 2 102692670 102734295 - B230118H07Rik protein_coding retained_intron MGP_CASTEiJ_T0057557.1 MGP_CASTEiJ_G0025679.1 mouse_genomes_project 2 132719866 132798966 + MGP_CASTEiJ_P0057557 Ebf4 protein_coding protein_coding MGP_CASTEiJ_T0057558.1 MGP_CASTEiJ_G0025679.1 mouse_genomes_project 2 132720636 132798966 + Ebf4 protein_coding retained_intron MGP_CASTEiJ_T0057559.1 MGP_CASTEiJ_G0025679.1 mouse_genomes_project 2 132720636 132798966 + MGP_CASTEiJ_P0057559 Ebf4 protein_coding protein_coding MGP_CASTEiJ_T0057560.1 MGP_CASTEiJ_G0025679.1 mouse_genomes_project 2 132720636 132798966 + MGP_CASTEiJ_P0057560 Ebf4 protein_coding protein_coding MGP_CASTEiJ_T0057561.1 MGP_CASTEiJ_G0025679.1 mouse_genomes_project 2 132720636 132798966 + MGP_CASTEiJ_P0057561 Ebf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057562.1 MGP_CASTEiJ_G0025679.1 mouse_genomes_project 2 132720636 132798966 + MGP_CASTEiJ_P0057562 Ebf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059462.1 MGP_CASTEiJ_G0026117.1 mouse_genomes_project 2 177217603 177227691 + MGP_CASTEiJ_P0059462 Fam210b protein_coding protein_coding MGP_CASTEiJ_T0007166.1 MGP_CASTEiJ_G0005890.1 mouse_genomes_project 2 151713629 151722715 + Gm14120 lincRNA lincRNA MGP_CASTEiJ_T0003861.1 MGP_CASTEiJ_G0003452.1 mouse_genomes_project 2 65054148 65062332 - Gm13619 antisense antisense MGP_CASTEiJ_T0057400.1 MGP_CASTEiJ_G0025640.1 mouse_genomes_project 2 129726594 129734930 - MGP_CASTEiJ_P0057400 Fahd2a protein_coding protein_coding MGP_CASTEiJ_T0057401.1 MGP_CASTEiJ_G0025640.1 mouse_genomes_project 2 129726595 129734945 - Fahd2a protein_coding retained_intron MGP_CASTEiJ_T0057402.1 MGP_CASTEiJ_G0025640.1 mouse_genomes_project 2 129726650 129728697 - Fahd2a protein_coding processed_transcript MGP_CASTEiJ_T0057403.1 MGP_CASTEiJ_G0025640.1 mouse_genomes_project 2 129727216 129734937 - Fahd2a protein_coding processed_transcript MGP_CASTEiJ_T0057404.1 MGP_CASTEiJ_G0025640.1 mouse_genomes_project 2 129728499 129734860 - Fahd2a protein_coding processed_transcript MGP_CASTEiJ_T0057405.1 MGP_CASTEiJ_G0025640.1 mouse_genomes_project 2 129728788 129734896 - Fahd2a protein_coding retained_intron MGP_CASTEiJ_T0057406.1 MGP_CASTEiJ_G0025640.1 mouse_genomes_project 2 129730808 129734888 - Fahd2a protein_coding processed_transcript MGP_CASTEiJ_T0055613.1 MGP_CASTEiJ_G0025117.1 mouse_genomes_project 2 85771286 85772231 - MGP_CASTEiJ_P0055613 Olfr994 protein_coding protein_coding MGP_CASTEiJ_T0052612.1 MGP_CASTEiJ_G0024573.1 mouse_genomes_project 2 16140225 16150019 + Bmi1 protein_coding processed_transcript MGP_CASTEiJ_T0052613.1 MGP_CASTEiJ_G0024573.1 mouse_genomes_project 2 16145473 16151327 + MGP_CASTEiJ_P0052613 Bmi1 protein_coding protein_coding MGP_CASTEiJ_T0052614.1 MGP_CASTEiJ_G0024573.1 mouse_genomes_project 2 16148030 16154204 + MGP_CASTEiJ_P0052614 Bmi1 protein_coding protein_coding MGP_CASTEiJ_T0052615.1 MGP_CASTEiJ_G0024573.1 mouse_genomes_project 2 16148032 16153339 + MGP_CASTEiJ_P0052615 Bmi1 protein_coding protein_coding MGP_CASTEiJ_T0052616.1 MGP_CASTEiJ_G0024573.1 mouse_genomes_project 2 16148647 16150684 + MGP_CASTEiJ_P0052616 Bmi1 protein_coding protein_coding MGP_CASTEiJ_T0052617.1 MGP_CASTEiJ_G0024573.1 mouse_genomes_project 2 16148760 16150510 + MGP_CASTEiJ_P0052617 Bmi1 protein_coding protein_coding MGP_CASTEiJ_T0057268.1 MGP_CASTEiJ_G0025610.1 mouse_genomes_project 2 127776885 127843807 - MGP_CASTEiJ_P0057268 Cep152 protein_coding protein_coding MGP_CASTEiJ_T0057269.1 MGP_CASTEiJ_G0025610.1 mouse_genomes_project 2 127777197 127843792 - MGP_CASTEiJ_P0057269 Cep152 protein_coding unknown_likely_coding MGP_CASTEiJ_T0102216.1 MGP_CASTEiJ_G0038941.1 mouse_genomes_project 2 85966656 85972029 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0053319.1 MGP_CASTEiJ_G0024703.1 mouse_genomes_project 2 24637099 24644097 + MGP_CASTEiJ_P0053319 Cacfd1 protein_coding protein_coding MGP_CASTEiJ_T0053320.1 MGP_CASTEiJ_G0024703.1 mouse_genomes_project 2 24637099 24644672 + MGP_CASTEiJ_P0053320 Cacfd1 protein_coding protein_coding MGP_CASTEiJ_T0053321.1 MGP_CASTEiJ_G0024703.1 mouse_genomes_project 2 24637099 24648272 + MGP_CASTEiJ_P0053321 Cacfd1 protein_coding protein_coding MGP_CASTEiJ_T0053322.1 MGP_CASTEiJ_G0024703.1 mouse_genomes_project 2 24637099 24648272 + MGP_CASTEiJ_P0053322 Cacfd1 protein_coding protein_coding MGP_CASTEiJ_T0053323.1 MGP_CASTEiJ_G0024703.1 mouse_genomes_project 2 24637186 24645669 + Cacfd1 protein_coding processed_transcript MGP_CASTEiJ_T0053324.1 MGP_CASTEiJ_G0024703.1 mouse_genomes_project 2 24637255 24643152 + MGP_CASTEiJ_P0053324 Cacfd1 protein_coding protein_coding MGP_CASTEiJ_T0053325.1 MGP_CASTEiJ_G0024703.1 mouse_genomes_project 2 24637766 24647481 + MGP_CASTEiJ_P0053325 Cacfd1 protein_coding protein_coding MGP_CASTEiJ_T0053326.1 MGP_CASTEiJ_G0024703.1 mouse_genomes_project 2 24642825 24644683 + Cacfd1 protein_coding retained_intron MGP_CASTEiJ_T0003918.1 MGP_CASTEiJ_G0003490.1 mouse_genomes_project 2 106378932 106392315 - Wt1os antisense antisense MGP_CASTEiJ_T0003919.1 MGP_CASTEiJ_G0003490.1 mouse_genomes_project 2 106379259 106431621 - Wt1os antisense antisense MGP_CASTEiJ_T0003920.1 MGP_CASTEiJ_G0003490.1 mouse_genomes_project 2 106380309 106380518 - Wt1os antisense antisense MGP_CASTEiJ_T0003921.1 MGP_CASTEiJ_G0003490.1 mouse_genomes_project 2 106396187 106431514 - Wt1os antisense antisense MGP_CASTEiJ_T0010099.1 MGP_CASTEiJ_G0008287.1 mouse_genomes_project 2 22455946 22456072 + Gm22875 miRNA miRNA MGP_CASTEiJ_T0013076.1 MGP_CASTEiJ_G0011239.1 mouse_genomes_project 2 28844393 28844773 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100893.1 MGP_CASTEiJ_G0037806.1 mouse_genomes_project 2 98376036 98376165 - Gm23317 snoRNA snoRNA MGP_CASTEiJ_T0101571.1 MGP_CASTEiJ_G0038444.1 mouse_genomes_project 2 74715794 74716400 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0100908.1 MGP_CASTEiJ_G0037821.1 mouse_genomes_project 2 132700974 132701060 + Gm23187 snoRNA snoRNA MGP_CASTEiJ_T0102214.1 MGP_CASTEiJ_G0038939.1 mouse_genomes_project 2 85717425 85718321 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0055656.1 MGP_CASTEiJ_G0025158.1 mouse_genomes_project 2 86788669 86789611 - MGP_CASTEiJ_P0055656 Olfr1056 protein_coding protein_coding MGP_CASTEiJ_T0006985.1 MGP_CASTEiJ_G0005744.1 mouse_genomes_project 2 28544789 28557756 - Gm14486 lincRNA lincRNA MGP_CASTEiJ_T0006986.1 MGP_CASTEiJ_G0005744.1 mouse_genomes_project 2 28544934 28565949 - Gm14486 lincRNA lincRNA MGP_CASTEiJ_T0013376.1 MGP_CASTEiJ_G0011539.1 mouse_genomes_project 2 147890517 147890980 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013079.1 MGP_CASTEiJ_G0011242.1 mouse_genomes_project 2 29981489 29982895 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057343.1 MGP_CASTEiJ_G0025626.1 mouse_genomes_project 2 129149674 129195193 - MGP_CASTEiJ_P0057343 Sppl2a protein_coding protein_coding MGP_CASTEiJ_T0057344.1 MGP_CASTEiJ_G0025626.1 mouse_genomes_project 2 129153533 129181092 - MGP_CASTEiJ_P0057344 Sppl2a protein_coding protein_coding MGP_CASTEiJ_T0057345.1 MGP_CASTEiJ_G0025626.1 mouse_genomes_project 2 129175616 129185725 - Sppl2a protein_coding retained_intron MGP_CASTEiJ_T0100872.1 MGP_CASTEiJ_G0037785.1 mouse_genomes_project 2 44921891 44922014 + Gm23072 snoRNA snoRNA MGP_CASTEiJ_T0055279.1 MGP_CASTEiJ_G0025044.1 mouse_genomes_project 2 74531283 74534454 + MGP_CASTEiJ_P0055279 Hoxd10 protein_coding protein_coding MGP_CASTEiJ_T0007071.1 MGP_CASTEiJ_G0005815.1 mouse_genomes_project 2 92133311 92139199 - Gm17281 lincRNA lincRNA MGP_CASTEiJ_T0004046.1 MGP_CASTEiJ_G0003584.1 mouse_genomes_project 2 175111015 175112995 + Bcas1os1 antisense antisense MGP_CASTEiJ_T0013380.1 MGP_CASTEiJ_G0011543.1 mouse_genomes_project 2 149001511 149002126 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056283.1 MGP_CASTEiJ_G0025384.1 mouse_genomes_project 2 103803830 103941718 + MGP_CASTEiJ_P0056283 Slc1a2 protein_coding protein_coding MGP_CASTEiJ_T0056284.1 MGP_CASTEiJ_G0025384.1 mouse_genomes_project 2 103804397 103884361 + Slc1a2 protein_coding processed_transcript MGP_CASTEiJ_T0056285.1 MGP_CASTEiJ_G0025384.1 mouse_genomes_project 2 103804432 103884358 + Slc1a2 protein_coding processed_transcript MGP_CASTEiJ_T0056286.1 MGP_CASTEiJ_G0025384.1 mouse_genomes_project 2 103804455 103928537 + MGP_CASTEiJ_P0056286 Slc1a2 protein_coding protein_coding MGP_CASTEiJ_T0056287.1 MGP_CASTEiJ_G0025384.1 mouse_genomes_project 2 103822053 103884358 + Slc1a2 protein_coding processed_transcript MGP_CASTEiJ_T0056288.1 MGP_CASTEiJ_G0025384.1 mouse_genomes_project 2 103853625 103888254 + MGP_CASTEiJ_P0056288 Slc1a2 protein_coding protein_coding MGP_CASTEiJ_T0056289.1 MGP_CASTEiJ_G0025384.1 mouse_genomes_project 2 103853707 103928546 + MGP_CASTEiJ_P0056289 Slc1a2 protein_coding protein_coding MGP_CASTEiJ_T0056290.1 MGP_CASTEiJ_G0025384.1 mouse_genomes_project 2 103853707 103932729 + MGP_CASTEiJ_P0056290 Slc1a2 protein_coding protein_coding MGP_CASTEiJ_T0056291.1 MGP_CASTEiJ_G0025384.1 mouse_genomes_project 2 103867368 103884354 + Slc1a2 protein_coding processed_transcript MGP_CASTEiJ_T0056292.1 MGP_CASTEiJ_G0025384.1 mouse_genomes_project 2 103904192 103928025 + MGP_CASTEiJ_P0056292 Slc1a2 protein_coding protein_coding MGP_CASTEiJ_T0056293.1 MGP_CASTEiJ_G0025384.1 mouse_genomes_project 2 103909582 103932543 + MGP_CASTEiJ_P0056293 Slc1a2 protein_coding protein_coding MGP_CASTEiJ_T0010049.1 MGP_CASTEiJ_G0008237.1 mouse_genomes_project 2 27785 27892 + Gm27306 miRNA miRNA MGP_CASTEiJ_T0013027.1 MGP_CASTEiJ_G0011190.1 mouse_genomes_project 2 11356279 11392750 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004065.1 MGP_CASTEiJ_G0003597.1 mouse_genomes_project 2 184463216 184471293 + Uckl1os antisense antisense MGP_CASTEiJ_T0004066.1 MGP_CASTEiJ_G0003597.1 mouse_genomes_project 2 184463221 184465426 + Uckl1os antisense antisense MGP_CASTEiJ_T0004067.1 MGP_CASTEiJ_G0003597.1 mouse_genomes_project 2 184463254 184466861 + Uckl1os antisense antisense MGP_CASTEiJ_T0004068.1 MGP_CASTEiJ_G0003597.1 mouse_genomes_project 2 184464225 184467140 + Uckl1os antisense antisense MGP_CASTEiJ_T0004069.1 MGP_CASTEiJ_G0003597.1 mouse_genomes_project 2 184464268 184468313 + Uckl1os antisense antisense MGP_CASTEiJ_T0004070.1 MGP_CASTEiJ_G0003597.1 mouse_genomes_project 2 184464334 184467373 + Uckl1os antisense antisense MGP_CASTEiJ_T0004071.1 MGP_CASTEiJ_G0003597.1 mouse_genomes_project 2 184468403 184471344 + Uckl1os antisense antisense MGP_CASTEiJ_T0004007.1 MGP_CASTEiJ_G0003554.1 mouse_genomes_project 2 159190765 159192467 + Gssos2 antisense antisense MGP_CASTEiJ_T0004008.1 MGP_CASTEiJ_G0003554.1 mouse_genomes_project 2 159191521 159192453 + Gssos2 antisense antisense MGP_CASTEiJ_T0013436.1 MGP_CASTEiJ_G0011599.1 mouse_genomes_project 2 170187028 170187625 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100859.1 MGP_CASTEiJ_G0037772.1 mouse_genomes_project 2 24536150 24536224 + Gm22879 snoRNA snoRNA MGP_CASTEiJ_T0059421.1 MGP_CASTEiJ_G0026105.1 mouse_genomes_project 2 173264838 173285577 - MGP_CASTEiJ_P0059421 Sall4 protein_coding protein_coding MGP_CASTEiJ_T0059422.1 MGP_CASTEiJ_G0026105.1 mouse_genomes_project 2 173264838 173285577 - MGP_CASTEiJ_P0059422 Sall4 protein_coding protein_coding MGP_CASTEiJ_T0059423.1 MGP_CASTEiJ_G0026105.1 mouse_genomes_project 2 173264839 173285405 - MGP_CASTEiJ_P0059423 Sall4 protein_coding protein_coding MGP_CASTEiJ_T0059424.1 MGP_CASTEiJ_G0026105.1 mouse_genomes_project 2 173271355 173272384 - MGP_CASTEiJ_P0059424 Sall4 protein_coding protein_coding MGP_CASTEiJ_T0059425.1 MGP_CASTEiJ_G0026105.1 mouse_genomes_project 2 173272621 173283627 - MGP_CASTEiJ_P0059425 Sall4 protein_coding protein_coding MGP_CASTEiJ_T0059426.1 MGP_CASTEiJ_G0026105.1 mouse_genomes_project 2 173273054 173286319 - Sall4 protein_coding processed_transcript MGP_CASTEiJ_T0059427.1 MGP_CASTEiJ_G0026105.1 mouse_genomes_project 2 173273193 173285493 - Sall4 protein_coding processed_transcript MGP_CASTEiJ_T0057332.1 MGP_CASTEiJ_G0025625.1 mouse_genomes_project 2 129045792 129133082 - MGP_CASTEiJ_P0057332 Trpm7 protein_coding protein_coding MGP_CASTEiJ_T0057333.1 MGP_CASTEiJ_G0025625.1 mouse_genomes_project 2 129045798 129132969 - MGP_CASTEiJ_P0057333 Trpm7 protein_coding protein_coding MGP_CASTEiJ_T0057334.1 MGP_CASTEiJ_G0025625.1 mouse_genomes_project 2 129045811 129049884 - Trpm7 protein_coding retained_intron MGP_CASTEiJ_T0057335.1 MGP_CASTEiJ_G0025625.1 mouse_genomes_project 2 129047052 129056961 - Trpm7 protein_coding retained_intron MGP_CASTEiJ_T0057336.1 MGP_CASTEiJ_G0025625.1 mouse_genomes_project 2 129047123 129052181 - MGP_CASTEiJ_P0057336 Trpm7 protein_coding protein_coding MGP_CASTEiJ_T0057337.1 MGP_CASTEiJ_G0025625.1 mouse_genomes_project 2 129051328 129052164 - Trpm7 protein_coding retained_intron MGP_CASTEiJ_T0057338.1 MGP_CASTEiJ_G0025625.1 mouse_genomes_project 2 129051617 129059418 - Trpm7 protein_coding processed_transcript MGP_CASTEiJ_T0057339.1 MGP_CASTEiJ_G0025625.1 mouse_genomes_project 2 129067664 129073302 - Trpm7 protein_coding retained_intron MGP_CASTEiJ_T0057340.1 MGP_CASTEiJ_G0025625.1 mouse_genomes_project 2 129084920 129089511 - Trpm7 protein_coding retained_intron MGP_CASTEiJ_T0057341.1 MGP_CASTEiJ_G0025625.1 mouse_genomes_project 2 129086477 129133038 - Trpm7 protein_coding retained_intron MGP_CASTEiJ_T0057342.1 MGP_CASTEiJ_G0025625.1 mouse_genomes_project 2 129086480 129089850 - Trpm7 protein_coding retained_intron MGP_CASTEiJ_T0010096.1 MGP_CASTEiJ_G0008284.1 mouse_genomes_project 2 17389005 17389081 + Gm44457 miRNA miRNA MGP_CASTEiJ_T0055777.1 MGP_CASTEiJ_G0025264.1 mouse_genomes_project 2 89841798 89842822 - MGP_CASTEiJ_P0055777 Olfr1217 protein_coding protein_coding MGP_CASTEiJ_T0100916.1 MGP_CASTEiJ_G0037829.1 mouse_genomes_project 2 152799201 152799293 - Gm24551 snoRNA snoRNA MGP_CASTEiJ_T0056532.1 MGP_CASTEiJ_G0025435.1 mouse_genomes_project 2 112575403 112595362 - MGP_CASTEiJ_P0056532 Gm15130 protein_coding protein_coding MGP_CASTEiJ_T0013256.1 MGP_CASTEiJ_G0011419.1 mouse_genomes_project 2 97214274 97214434 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055432.1 MGP_CASTEiJ_G0025074.1 mouse_genomes_project 2 79831063 79942268 + MGP_CASTEiJ_P0055432 Ppp1r1c protein_coding protein_coding MGP_CASTEiJ_T0055433.1 MGP_CASTEiJ_G0025074.1 mouse_genomes_project 2 79831205 79940504 + MGP_CASTEiJ_P0055433 Ppp1r1c protein_coding protein_coding MGP_CASTEiJ_T0055434.1 MGP_CASTEiJ_G0025074.1 mouse_genomes_project 2 79831206 79947623 + MGP_CASTEiJ_P0055434 Ppp1r1c protein_coding protein_coding MGP_CASTEiJ_T0055435.1 MGP_CASTEiJ_G0025074.1 mouse_genomes_project 2 79831345 79950509 + Ppp1r1c protein_coding processed_transcript MGP_CASTEiJ_T0055436.1 MGP_CASTEiJ_G0025074.1 mouse_genomes_project 2 79916474 79941260 + Ppp1r1c protein_coding processed_transcript MGP_CASTEiJ_T0055202.1 MGP_CASTEiJ_G0025028.1 mouse_genomes_project 2 72708317 72723485 - MGP_CASTEiJ_P0055202 Gm11084 protein_coding protein_coding MGP_CASTEiJ_T0003854.1 MGP_CASTEiJ_G0003447.1 mouse_genomes_project 2 59574323 59577486 + Gm13583 antisense antisense MGP_CASTEiJ_T0003855.1 MGP_CASTEiJ_G0003447.1 mouse_genomes_project 2 59574325 59574448 + Gm13583 antisense antisense MGP_CASTEiJ_T0003856.1 MGP_CASTEiJ_G0003447.1 mouse_genomes_project 2 59575917 59576837 + Gm13583 antisense antisense MGP_CASTEiJ_T0055630.1 MGP_CASTEiJ_G0025133.1 mouse_genomes_project 2 86218169 86219102 - MGP_CASTEiJ_P0055630 Olfr1019 protein_coding protein_coding MGP_CASTEiJ_T0099668.1 MGP_CASTEiJ_G0036581.1 mouse_genomes_project 2 155718831 155718894 + Gm27343 snRNA snRNA MGP_CASTEiJ_T0056145.1 MGP_CASTEiJ_G0025357.1 mouse_genomes_project 2 93939213 93981666 + MGP_CASTEiJ_P0056145 Syt13 protein_coding protein_coding MGP_CASTEiJ_T0013248.1 MGP_CASTEiJ_G0011411.1 mouse_genomes_project 2 93202732 93203065 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003913.1 MGP_CASTEiJ_G0003488.1 mouse_genomes_project 2 103886284 103895130 - Gm13872 antisense antisense MGP_CASTEiJ_T0003914.1 MGP_CASTEiJ_G0003488.1 mouse_genomes_project 2 103892026 103895117 - Gm13872 antisense antisense MGP_CASTEiJ_T0003915.1 MGP_CASTEiJ_G0003488.1 mouse_genomes_project 2 103893013 103895131 - Gm13872 antisense antisense MGP_CASTEiJ_T0055116.1 MGP_CASTEiJ_G0025014.1 mouse_genomes_project 2 70621156 70647052 + MGP_CASTEiJ_P0055116 Dcaf17 protein_coding protein_coding MGP_CASTEiJ_T0055117.1 MGP_CASTEiJ_G0025014.1 mouse_genomes_project 2 70621572 70657092 + MGP_CASTEiJ_P0055117 Dcaf17 protein_coding protein_coding MGP_CASTEiJ_T0055118.1 MGP_CASTEiJ_G0025014.1 mouse_genomes_project 2 70621586 70638663 + MGP_CASTEiJ_P0055118 Dcaf17 protein_coding protein_coding MGP_CASTEiJ_T0055119.1 MGP_CASTEiJ_G0025014.1 mouse_genomes_project 2 70621609 70660376 + MGP_CASTEiJ_P0055119 Dcaf17 protein_coding protein_coding MGP_CASTEiJ_T0055120.1 MGP_CASTEiJ_G0025014.1 mouse_genomes_project 2 70621612 70643832 + MGP_CASTEiJ_P0055120 Dcaf17 protein_coding protein_coding MGP_CASTEiJ_T0055121.1 MGP_CASTEiJ_G0025014.1 mouse_genomes_project 2 70621674 70650725 + MGP_CASTEiJ_P0055121 Dcaf17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055122.1 MGP_CASTEiJ_G0025014.1 mouse_genomes_project 2 70621680 70649090 + MGP_CASTEiJ_P0055122 Dcaf17 protein_coding protein_coding MGP_CASTEiJ_T0055123.1 MGP_CASTEiJ_G0025014.1 mouse_genomes_project 2 70635836 70642435 + Dcaf17 protein_coding processed_transcript MGP_CASTEiJ_T0057600.1 MGP_CASTEiJ_G0025693.1 mouse_genomes_project 2 133097478 133098221 - Ddrgk1 protein_coding retained_intron MGP_CASTEiJ_T0057601.1 MGP_CASTEiJ_G0025693.1 mouse_genomes_project 2 133097599 133114489 - MGP_CASTEiJ_P0057601 Ddrgk1 protein_coding protein_coding MGP_CASTEiJ_T0057602.1 MGP_CASTEiJ_G0025693.1 mouse_genomes_project 2 133097638 133100782 - Ddrgk1 protein_coding processed_transcript MGP_CASTEiJ_T0057603.1 MGP_CASTEiJ_G0025693.1 mouse_genomes_project 2 133097734 133107774 - MGP_CASTEiJ_P0057603 Ddrgk1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057604.1 MGP_CASTEiJ_G0025693.1 mouse_genomes_project 2 133098642 133109850 - Ddrgk1 protein_coding processed_transcript MGP_CASTEiJ_T0102244.1 MGP_CASTEiJ_G0038969.1 mouse_genomes_project 2 90915426 90916356 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0007142.1 MGP_CASTEiJ_G0005870.1 mouse_genomes_project 2 135007348 135040429 + 4921508D12Rik lincRNA lincRNA MGP_CASTEiJ_T0101862.1 MGP_CASTEiJ_G0038604.1 mouse_genomes_project 2 107334629 107376391 + unitary_pseudogene processed_transcript MGP_CASTEiJ_T0101863.1 MGP_CASTEiJ_G0038604.1 mouse_genomes_project 2 107374012 107742884 + unitary_pseudogene unitary_pseudogene MGP_CASTEiJ_T0101864.1 MGP_CASTEiJ_G0038604.1 mouse_genomes_project 2 107568978 107742884 + unitary_pseudogene processed_transcript MGP_CASTEiJ_T0101865.1 MGP_CASTEiJ_G0038604.1 mouse_genomes_project 2 107573421 107688567 + unitary_pseudogene processed_transcript MGP_CASTEiJ_T0101866.1 MGP_CASTEiJ_G0038604.1 mouse_genomes_project 2 107740939 107758697 + unitary_pseudogene retained_intron MGP_CASTEiJ_T0057566.1 MGP_CASTEiJ_G0025682.1 mouse_genomes_project 2 132835762 132836574 + MGP_CASTEiJ_P0057566 1700020A23Rik protein_coding protein_coding MGP_CASTEiJ_T0057567.1 MGP_CASTEiJ_G0025682.1 mouse_genomes_project 2 132835768 132836522 + MGP_CASTEiJ_P0057567 1700020A23Rik protein_coding protein_coding MGP_CASTEiJ_T0057568.1 MGP_CASTEiJ_G0025682.1 mouse_genomes_project 2 132835789 132836578 + MGP_CASTEiJ_P0057568 1700020A23Rik protein_coding protein_coding MGP_CASTEiJ_T0055209.1 MGP_CASTEiJ_G0025030.1 mouse_genomes_project 2 73041027 73048488 + MGP_CASTEiJ_P0055209 Sp9 protein_coding protein_coding MGP_CASTEiJ_T0055210.1 MGP_CASTEiJ_G0025030.1 mouse_genomes_project 2 73041068 73056471 + Sp9 protein_coding processed_transcript MGP_CASTEiJ_T0055211.1 MGP_CASTEiJ_G0025030.1 mouse_genomes_project 2 73041089 73047072 + MGP_CASTEiJ_P0055211 Sp9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057522.1 MGP_CASTEiJ_G0025671.1 mouse_genomes_project 2 132082184 132095455 - MGP_CASTEiJ_P0057522 Pdyn protein_coding protein_coding MGP_CASTEiJ_T0057523.1 MGP_CASTEiJ_G0025671.1 mouse_genomes_project 2 132084116 132094280 - MGP_CASTEiJ_P0057523 Pdyn protein_coding protein_coding MGP_CASTEiJ_T0057524.1 MGP_CASTEiJ_G0025671.1 mouse_genomes_project 2 132093607 132095466 - Pdyn protein_coding retained_intron MGP_CASTEiJ_T0055234.1 MGP_CASTEiJ_G0025035.1 mouse_genomes_project 2 73357148 73377055 - MGP_CASTEiJ_P0055234 Chrna1 protein_coding protein_coding MGP_CASTEiJ_T0003873.1 MGP_CASTEiJ_G0003463.1 mouse_genomes_project 2 71115454 71126933 - Dlx1as antisense antisense MGP_CASTEiJ_T0003874.1 MGP_CASTEiJ_G0003463.1 mouse_genomes_project 2 71123042 71126941 - Dlx1as antisense antisense MGP_CASTEiJ_T0003875.1 MGP_CASTEiJ_G0003463.1 mouse_genomes_project 2 71126852 71137713 - Dlx1as antisense antisense MGP_CASTEiJ_T0003876.1 MGP_CASTEiJ_G0003463.1 mouse_genomes_project 2 71131796 71137794 - Dlx1as antisense antisense MGP_CASTEiJ_T0099637.1 MGP_CASTEiJ_G0036550.1 mouse_genomes_project 2 62564794 62564901 - Gm23503 snRNA snRNA MGP_CASTEiJ_T0055814.1 MGP_CASTEiJ_G0025292.1 mouse_genomes_project 2 90549598 90550673 - MGP_CASTEiJ_P0055814 protein_coding protein_coding MGP_CASTEiJ_T0017143.1 MGP_CASTEiJ_G0014795.1 mouse_genomes_project 2 160279015 160283217 - Gm14169 processed_transcript processed_transcript MGP_CASTEiJ_T0058379.1 MGP_CASTEiJ_G0025886.1 mouse_genomes_project 2 157655635 157661975 + MGP_CASTEiJ_P0058379 Bpifa1 protein_coding protein_coding MGP_CASTEiJ_T0058380.1 MGP_CASTEiJ_G0025886.1 mouse_genomes_project 2 157655654 157657912 + Bpifa1 protein_coding processed_transcript MGP_CASTEiJ_T0058381.1 MGP_CASTEiJ_G0025886.1 mouse_genomes_project 2 157657082 157660483 + Bpifa1 protein_coding processed_transcript MGP_CASTEiJ_T0013240.1 MGP_CASTEiJ_G0011403.1 mouse_genomes_project 2 88424330 88424857 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003925.1 MGP_CASTEiJ_G0003493.1 mouse_genomes_project 2 111506325 111525375 - Ccdc34os antisense antisense MGP_CASTEiJ_T0003926.1 MGP_CASTEiJ_G0003493.1 mouse_genomes_project 2 111506326 111525378 - Ccdc34os antisense antisense MGP_CASTEiJ_T0001025.1 MGP_CASTEiJ_G0000961.1 mouse_genomes_project 2 36256543 36260489 - TEC TEC MGP_CASTEiJ_T0059469.1 MGP_CASTEiJ_G0026120.1 mouse_genomes_project 2 177268334 177318438 + MGP_CASTEiJ_P0059469 Cass4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059470.1 MGP_CASTEiJ_G0026120.1 mouse_genomes_project 2 177271190 177314543 + MGP_CASTEiJ_P0059470 Cass4 protein_coding protein_coding MGP_CASTEiJ_T0059471.1 MGP_CASTEiJ_G0026120.1 mouse_genomes_project 2 177271217 177318549 + MGP_CASTEiJ_P0059471 Cass4 protein_coding protein_coding MGP_CASTEiJ_T0059472.1 MGP_CASTEiJ_G0026120.1 mouse_genomes_project 2 177271296 177317627 + MGP_CASTEiJ_P0059472 Cass4 protein_coding protein_coding MGP_CASTEiJ_T0102202.1 MGP_CASTEiJ_G0038927.1 mouse_genomes_project 2 34553684 34554590 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0052541.1 MGP_CASTEiJ_G0024562.1 mouse_genomes_project 2 12431031 12464146 + MGP_CASTEiJ_P0052541 Arl5b protein_coding protein_coding MGP_CASTEiJ_T0052543.1 MGP_CASTEiJ_G0024562.1 mouse_genomes_project 2 12436928 12464150 + MGP_CASTEiJ_P0052543 Arl5b protein_coding protein_coding MGP_CASTEiJ_T0052544.1 MGP_CASTEiJ_G0024562.1 mouse_genomes_project 2 12436975 12458275 + MGP_CASTEiJ_P0052544 Arl5b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052545.1 MGP_CASTEiJ_G0024562.1 mouse_genomes_project 2 12437035 12459238 + MGP_CASTEiJ_P0052545 Arl5b protein_coding protein_coding MGP_CASTEiJ_T0052546.1 MGP_CASTEiJ_G0024562.1 mouse_genomes_project 2 12449821 12458285 + MGP_CASTEiJ_P0052546 Arl5b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052547.1 MGP_CASTEiJ_G0024562.1 mouse_genomes_project 2 12451643 12454853 + Arl5b protein_coding retained_intron MGP_CASTEiJ_T0052548.1 MGP_CASTEiJ_G0024562.1 mouse_genomes_project 2 12456676 12464146 + MGP_CASTEiJ_P0052548 Arl5b protein_coding protein_coding MGP_CASTEiJ_T0053406.1 MGP_CASTEiJ_G0024721.1 mouse_genomes_project 2 26230791 26231167 + MGP_CASTEiJ_P0053406 protein_coding protein_coding MGP_CASTEiJ_T0013030.1 MGP_CASTEiJ_G0011193.1 mouse_genomes_project 2 12075240 12075708 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059929.1 MGP_CASTEiJ_G0026214.1 mouse_genomes_project 2 184764792 184771475 + MGP_CASTEiJ_P0059929 Polr3k protein_coding protein_coding MGP_CASTEiJ_T0059930.1 MGP_CASTEiJ_G0026214.1 mouse_genomes_project 2 184764815 184766820 + Polr3k protein_coding retained_intron MGP_CASTEiJ_T0099656.1 MGP_CASTEiJ_G0036569.1 mouse_genomes_project 2 128342878 128342978 - Gm26496 snRNA snRNA MGP_CASTEiJ_T0055212.1 MGP_CASTEiJ_G0025031.1 mouse_genomes_project 2 73079012 73085638 - protein_coding processed_transcript MGP_CASTEiJ_T0100928.1 MGP_CASTEiJ_G0037841.1 mouse_genomes_project 2 166753658 166753784 + Gm22936 snoRNA snoRNA MGP_CASTEiJ_T0099649.1 MGP_CASTEiJ_G0036562.1 mouse_genomes_project 2 111688145 111688252 + Gm22997 snRNA snRNA MGP_CASTEiJ_T0013312.1 MGP_CASTEiJ_G0011475.1 mouse_genomes_project 2 118774603 118775050 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017047.1 MGP_CASTEiJ_G0014748.1 mouse_genomes_project 2 85374389 85380507 - processed_transcript processed_transcript MGP_CASTEiJ_T0013257.1 MGP_CASTEiJ_G0011420.1 mouse_genomes_project 2 98111444 98112114 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056843.1 MGP_CASTEiJ_G0025536.1 mouse_genomes_project 2 121779848 121857453 + MGP_CASTEiJ_P0056843 Mga protein_coding protein_coding MGP_CASTEiJ_T0056844.1 MGP_CASTEiJ_G0025536.1 mouse_genomes_project 2 121779848 121855671 + MGP_CASTEiJ_P0056844 Mga protein_coding protein_coding MGP_CASTEiJ_T0056845.1 MGP_CASTEiJ_G0025536.1 mouse_genomes_project 2 121779848 121857453 + MGP_CASTEiJ_P0056845 Mga protein_coding protein_coding MGP_CASTEiJ_T0056846.1 MGP_CASTEiJ_G0025536.1 mouse_genomes_project 2 121779848 121857453 + MGP_CASTEiJ_P0056846 Mga protein_coding protein_coding MGP_CASTEiJ_T0056847.1 MGP_CASTEiJ_G0025536.1 mouse_genomes_project 2 121779852 121801188 + Mga protein_coding retained_intron MGP_CASTEiJ_T0056848.1 MGP_CASTEiJ_G0025536.1 mouse_genomes_project 2 121779868 121811017 + Mga protein_coding processed_transcript MGP_CASTEiJ_T0056849.1 MGP_CASTEiJ_G0025536.1 mouse_genomes_project 2 121779868 121858010 + MGP_CASTEiJ_P0056849 Mga protein_coding unknown_likely_coding MGP_CASTEiJ_T0056850.1 MGP_CASTEiJ_G0025536.1 mouse_genomes_project 2 121779925 121847543 + MGP_CASTEiJ_P0056850 Mga protein_coding protein_coding MGP_CASTEiJ_T0056851.1 MGP_CASTEiJ_G0025536.1 mouse_genomes_project 2 121806021 121808425 + Mga protein_coding retained_intron MGP_CASTEiJ_T0056852.1 MGP_CASTEiJ_G0025536.1 mouse_genomes_project 2 121819503 121823103 + Mga protein_coding processed_transcript MGP_CASTEiJ_T0056853.1 MGP_CASTEiJ_G0025536.1 mouse_genomes_project 2 121819672 121830785 + Mga protein_coding processed_transcript MGP_CASTEiJ_T0056854.1 MGP_CASTEiJ_G0025536.1 mouse_genomes_project 2 121819767 121825877 + Mga protein_coding processed_transcript MGP_CASTEiJ_T0056855.1 MGP_CASTEiJ_G0025536.1 mouse_genomes_project 2 121825586 121831532 + Mga protein_coding processed_transcript MGP_CASTEiJ_T0056856.1 MGP_CASTEiJ_G0025536.1 mouse_genomes_project 2 121826090 121831325 + Mga protein_coding processed_transcript MGP_CASTEiJ_T0056857.1 MGP_CASTEiJ_G0025536.1 mouse_genomes_project 2 121845056 121853284 + Mga protein_coding processed_transcript MGP_CASTEiJ_T0056858.1 MGP_CASTEiJ_G0025536.1 mouse_genomes_project 2 121847153 121848973 + Mga protein_coding retained_intron MGP_CASTEiJ_T0098576.1 MGP_CASTEiJ_G0035507.1 mouse_genomes_project 2 113970185 113970299 - n-R5s202 rRNA rRNA MGP_CASTEiJ_T0010161.1 MGP_CASTEiJ_G0008349.1 mouse_genomes_project 2 114118780 114118902 + Gm44374 miRNA miRNA MGP_CASTEiJ_T0057149.1 MGP_CASTEiJ_G0025581.1 mouse_genomes_project 2 123898408 123968960 + MGP_CASTEiJ_P0057149 Casc4 protein_coding protein_coding MGP_CASTEiJ_T0057150.1 MGP_CASTEiJ_G0025581.1 mouse_genomes_project 2 123898408 123968960 + MGP_CASTEiJ_P0057150 Casc4 protein_coding protein_coding MGP_CASTEiJ_T0057151.1 MGP_CASTEiJ_G0025581.1 mouse_genomes_project 2 123898567 123931321 + Casc4 protein_coding retained_intron MGP_CASTEiJ_T0057152.1 MGP_CASTEiJ_G0025581.1 mouse_genomes_project 2 123898568 123937201 + Casc4 protein_coding retained_intron MGP_CASTEiJ_T0057153.1 MGP_CASTEiJ_G0025581.1 mouse_genomes_project 2 123898568 123968845 + MGP_CASTEiJ_P0057153 Casc4 protein_coding protein_coding MGP_CASTEiJ_T0057154.1 MGP_CASTEiJ_G0025581.1 mouse_genomes_project 2 123898568 123968803 + MGP_CASTEiJ_P0057154 Casc4 protein_coding protein_coding MGP_CASTEiJ_T0057155.1 MGP_CASTEiJ_G0025581.1 mouse_genomes_project 2 123899143 123966672 + Casc4 protein_coding processed_transcript MGP_CASTEiJ_T0057156.1 MGP_CASTEiJ_G0025581.1 mouse_genomes_project 2 123929916 123966637 + MGP_CASTEiJ_P0057156 Casc4 protein_coding protein_coding MGP_CASTEiJ_T0055634.1 MGP_CASTEiJ_G0025137.1 mouse_genomes_project 2 86309773 86310757 - MGP_CASTEiJ_P0055634 Olfr1024 protein_coding protein_coding MGP_CASTEiJ_T0056967.1 MGP_CASTEiJ_G0025553.1 mouse_genomes_project 2 122524547 122537203 + MGP_CASTEiJ_P0056967 Haus2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056968.1 MGP_CASTEiJ_G0025553.1 mouse_genomes_project 2 122524586 122538840 + MGP_CASTEiJ_P0056968 Haus2 protein_coding protein_coding MGP_CASTEiJ_T0053496.1 MGP_CASTEiJ_G0024737.1 mouse_genomes_project 2 27410357 27532371 + MGP_CASTEiJ_P0053496 Rapgef1 protein_coding protein_coding MGP_CASTEiJ_T0053497.1 MGP_CASTEiJ_G0024737.1 mouse_genomes_project 2 27410378 27532381 + MGP_CASTEiJ_P0053497 Rapgef1 protein_coding protein_coding MGP_CASTEiJ_T0053498.1 MGP_CASTEiJ_G0024737.1 mouse_genomes_project 2 27410407 27532992 + MGP_CASTEiJ_P0053498 Rapgef1 protein_coding protein_coding MGP_CASTEiJ_T0053499.1 MGP_CASTEiJ_G0024737.1 mouse_genomes_project 2 27410582 27530357 + MGP_CASTEiJ_P0053499 Rapgef1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053500.1 MGP_CASTEiJ_G0024737.1 mouse_genomes_project 2 27495404 27532381 + MGP_CASTEiJ_P0053500 Rapgef1 protein_coding protein_coding MGP_CASTEiJ_T0053501.1 MGP_CASTEiJ_G0024737.1 mouse_genomes_project 2 27522585 27527878 + Rapgef1 protein_coding processed_transcript MGP_CASTEiJ_T0053502.1 MGP_CASTEiJ_G0024737.1 mouse_genomes_project 2 27524593 27526258 + Rapgef1 protein_coding retained_intron MGP_CASTEiJ_T0056550.1 MGP_CASTEiJ_G0025452.1 mouse_genomes_project 2 113143715 113144654 - MGP_CASTEiJ_P0056550 Olfr1297 protein_coding protein_coding MGP_CASTEiJ_T0003837.1 MGP_CASTEiJ_G0003434.1 mouse_genomes_project 2 36537127 36539106 + Gm13556 antisense antisense MGP_CASTEiJ_T0058178.1 MGP_CASTEiJ_G0025822.1 mouse_genomes_project 2 154903795 154932683 - MGP_CASTEiJ_P0058178 Rad21l protein_coding protein_coding MGP_CASTEiJ_T0058179.1 MGP_CASTEiJ_G0025822.1 mouse_genomes_project 2 154903795 154932683 - MGP_CASTEiJ_P0058179 Rad21l protein_coding protein_coding MGP_CASTEiJ_T0058180.1 MGP_CASTEiJ_G0025822.1 mouse_genomes_project 2 154903795 154935630 - MGP_CASTEiJ_P0058180 Rad21l protein_coding unknown_likely_coding MGP_CASTEiJ_T0056826.1 MGP_CASTEiJ_G0025534.1 mouse_genomes_project 2 121636700 121662388 - MGP_CASTEiJ_P0056826 Rpap1 protein_coding protein_coding MGP_CASTEiJ_T0056827.1 MGP_CASTEiJ_G0025534.1 mouse_genomes_project 2 121637354 121662412 - MGP_CASTEiJ_P0056827 Rpap1 protein_coding protein_coding MGP_CASTEiJ_T0056828.1 MGP_CASTEiJ_G0025534.1 mouse_genomes_project 2 121637355 121662421 - MGP_CASTEiJ_P0056828 Rpap1 protein_coding protein_coding MGP_CASTEiJ_T0056829.1 MGP_CASTEiJ_G0025534.1 mouse_genomes_project 2 121637358 121662384 - MGP_CASTEiJ_P0056829 Rpap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056830.1 MGP_CASTEiJ_G0025534.1 mouse_genomes_project 2 121637361 121662404 - MGP_CASTEiJ_P0056830 Rpap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056831.1 MGP_CASTEiJ_G0025534.1 mouse_genomes_project 2 121642208 121662403 - Rpap1 protein_coding retained_intron MGP_CASTEiJ_T0056832.1 MGP_CASTEiJ_G0025534.1 mouse_genomes_project 2 121653034 121662398 - Rpap1 protein_coding retained_intron MGP_CASTEiJ_T0056833.1 MGP_CASTEiJ_G0025534.1 mouse_genomes_project 2 121653248 121655409 - Rpap1 protein_coding retained_intron MGP_CASTEiJ_T0056834.1 MGP_CASTEiJ_G0025534.1 mouse_genomes_project 2 121653595 121662413 - Rpap1 protein_coding processed_transcript MGP_CASTEiJ_T0100925.1 MGP_CASTEiJ_G0037838.1 mouse_genomes_project 2 162213045 162213178 + Gm25129 snoRNA snoRNA MGP_CASTEiJ_T0059212.1 MGP_CASTEiJ_G0026066.1 mouse_genomes_project 2 169504011 169538203 - MGP_CASTEiJ_P0059212 Elmo2 protein_coding protein_coding MGP_CASTEiJ_T0059213.1 MGP_CASTEiJ_G0026066.1 mouse_genomes_project 2 169505135 169514383 - MGP_CASTEiJ_P0059213 Elmo2 protein_coding protein_coding MGP_CASTEiJ_T0059214.1 MGP_CASTEiJ_G0026066.1 mouse_genomes_project 2 169505135 169543814 - MGP_CASTEiJ_P0059214 Elmo2 protein_coding protein_coding MGP_CASTEiJ_T0059215.1 MGP_CASTEiJ_G0026066.1 mouse_genomes_project 2 169505135 169543814 - MGP_CASTEiJ_P0059215 Elmo2 protein_coding protein_coding MGP_CASTEiJ_T0059216.1 MGP_CASTEiJ_G0026066.1 mouse_genomes_project 2 169507166 169543814 - MGP_CASTEiJ_P0059216 Elmo2 protein_coding protein_coding MGP_CASTEiJ_T0059217.1 MGP_CASTEiJ_G0026066.1 mouse_genomes_project 2 169507171 169534203 - MGP_CASTEiJ_P0059217 Elmo2 protein_coding protein_coding MGP_CASTEiJ_T0059218.1 MGP_CASTEiJ_G0026066.1 mouse_genomes_project 2 169515685 169531629 - Elmo2 protein_coding processed_transcript MGP_CASTEiJ_T0059219.1 MGP_CASTEiJ_G0026066.1 mouse_genomes_project 2 169516074 169529106 - MGP_CASTEiJ_P0059219 Elmo2 protein_coding protein_coding MGP_CASTEiJ_T0059220.1 MGP_CASTEiJ_G0026066.1 mouse_genomes_project 2 169522093 169528996 - Elmo2 protein_coding retained_intron MGP_CASTEiJ_T0059221.1 MGP_CASTEiJ_G0026066.1 mouse_genomes_project 2 169526269 169533651 - MGP_CASTEiJ_P0059221 Elmo2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059222.1 MGP_CASTEiJ_G0026066.1 mouse_genomes_project 2 169529033 169533875 - MGP_CASTEiJ_P0059222 Elmo2 protein_coding protein_coding MGP_CASTEiJ_T0059223.1 MGP_CASTEiJ_G0026066.1 mouse_genomes_project 2 169532990 169543814 - MGP_CASTEiJ_P0059223 Elmo2 protein_coding protein_coding MGP_CASTEiJ_T0055911.1 MGP_CASTEiJ_G0025325.1 mouse_genomes_project 2 91912989 91918418 + MGP_CASTEiJ_P0055911 Psmc3 protein_coding protein_coding MGP_CASTEiJ_T0055912.1 MGP_CASTEiJ_G0025325.1 mouse_genomes_project 2 91913035 91927174 + MGP_CASTEiJ_P0055912 Psmc3 protein_coding protein_coding MGP_CASTEiJ_T0055913.1 MGP_CASTEiJ_G0025325.1 mouse_genomes_project 2 91913075 91914916 + Psmc3 protein_coding processed_transcript MGP_CASTEiJ_T0055914.1 MGP_CASTEiJ_G0025325.1 mouse_genomes_project 2 91913080 91918418 + MGP_CASTEiJ_P0055914 Psmc3 protein_coding protein_coding MGP_CASTEiJ_T0055915.1 MGP_CASTEiJ_G0025325.1 mouse_genomes_project 2 91913258 91916826 + MGP_CASTEiJ_P0055915 Psmc3 protein_coding protein_coding MGP_CASTEiJ_T0055916.1 MGP_CASTEiJ_G0025325.1 mouse_genomes_project 2 91913281 91915977 + MGP_CASTEiJ_P0055916 Psmc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055917.1 MGP_CASTEiJ_G0025325.1 mouse_genomes_project 2 91913362 91914699 + Psmc3 protein_coding processed_transcript MGP_CASTEiJ_T0055918.1 MGP_CASTEiJ_G0025325.1 mouse_genomes_project 2 91913458 91914534 + Psmc3 protein_coding processed_transcript MGP_CASTEiJ_T0055919.1 MGP_CASTEiJ_G0025325.1 mouse_genomes_project 2 91913553 91914909 + Psmc3 protein_coding processed_transcript MGP_CASTEiJ_T0055920.1 MGP_CASTEiJ_G0025325.1 mouse_genomes_project 2 91917089 91918420 + Psmc3 protein_coding processed_transcript MGP_CASTEiJ_T0003818.1 MGP_CASTEiJ_G0003418.1 mouse_genomes_project 2 29154817 29156750 - Gm13405 antisense antisense MGP_CASTEiJ_T0058744.1 MGP_CASTEiJ_G0025952.1 mouse_genomes_project 2 160707879 160719852 - MGP_CASTEiJ_P0058744 Dsn1 protein_coding protein_coding MGP_CASTEiJ_T0058745.1 MGP_CASTEiJ_G0025952.1 mouse_genomes_project 2 160707891 160719931 - MGP_CASTEiJ_P0058745 Dsn1 protein_coding protein_coding MGP_CASTEiJ_T0058746.1 MGP_CASTEiJ_G0025952.1 mouse_genomes_project 2 160710338 160719807 - MGP_CASTEiJ_P0058746 Dsn1 protein_coding protein_coding MGP_CASTEiJ_T0058747.1 MGP_CASTEiJ_G0025952.1 mouse_genomes_project 2 160714482 160716039 - Dsn1 protein_coding retained_intron MGP_CASTEiJ_T0058748.1 MGP_CASTEiJ_G0025952.1 mouse_genomes_project 2 160715518 160719081 - MGP_CASTEiJ_P0058748 Dsn1 protein_coding protein_coding MGP_CASTEiJ_T0058749.1 MGP_CASTEiJ_G0025952.1 mouse_genomes_project 2 160718099 160719354 - MGP_CASTEiJ_P0058749 Dsn1 protein_coding protein_coding MGP_CASTEiJ_T0099671.1 MGP_CASTEiJ_G0036584.1 mouse_genomes_project 2 166813308 166813466 - Gm24478 snRNA snRNA MGP_CASTEiJ_T0001055.1 MGP_CASTEiJ_G0000990.1 mouse_genomes_project 2 160532224 160535563 - TEC TEC MGP_CASTEiJ_T0057681.1 MGP_CASTEiJ_G0025707.1 mouse_genomes_project 2 133703894 133708037 + Ap5s1 protein_coding processed_transcript MGP_CASTEiJ_T0057682.1 MGP_CASTEiJ_G0025707.1 mouse_genomes_project 2 133703902 133710857 + MGP_CASTEiJ_P0057682 Ap5s1 protein_coding protein_coding MGP_CASTEiJ_T0057683.1 MGP_CASTEiJ_G0025707.1 mouse_genomes_project 2 133706962 133711123 + Ap5s1 protein_coding processed_transcript MGP_CASTEiJ_T0057684.1 MGP_CASTEiJ_G0025707.1 mouse_genomes_project 2 133706989 133710715 + Ap5s1 protein_coding processed_transcript MGP_CASTEiJ_T0057685.1 MGP_CASTEiJ_G0025707.1 mouse_genomes_project 2 133707016 133711598 + MGP_CASTEiJ_P0057685 Ap5s1 protein_coding protein_coding MGP_CASTEiJ_T0057686.1 MGP_CASTEiJ_G0025707.1 mouse_genomes_project 2 133707032 133711601 + MGP_CASTEiJ_P0057686 Ap5s1 protein_coding protein_coding MGP_CASTEiJ_T0057687.1 MGP_CASTEiJ_G0025707.1 mouse_genomes_project 2 133707032 133711601 + MGP_CASTEiJ_P0057687 Ap5s1 protein_coding protein_coding MGP_CASTEiJ_T0057688.1 MGP_CASTEiJ_G0025707.1 mouse_genomes_project 2 133707196 133710985 + MGP_CASTEiJ_P0057688 Ap5s1 protein_coding protein_coding MGP_CASTEiJ_T0056750.1 MGP_CASTEiJ_G0025513.1 mouse_genomes_project 2 120932158 120941166 + MGP_CASTEiJ_P0056750 Rad51 protein_coding protein_coding MGP_CASTEiJ_T0056751.1 MGP_CASTEiJ_G0025513.1 mouse_genomes_project 2 120932172 120956163 + MGP_CASTEiJ_P0056751 Rad51 protein_coding protein_coding MGP_CASTEiJ_T0056752.1 MGP_CASTEiJ_G0025513.1 mouse_genomes_project 2 120932179 120952476 + Rad51 protein_coding retained_intron MGP_CASTEiJ_T0056753.1 MGP_CASTEiJ_G0025513.1 mouse_genomes_project 2 120932182 120955911 + MGP_CASTEiJ_P0056753 Rad51 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056754.1 MGP_CASTEiJ_G0025513.1 mouse_genomes_project 2 120938058 120939510 + Rad51 protein_coding retained_intron MGP_CASTEiJ_T0056755.1 MGP_CASTEiJ_G0025513.1 mouse_genomes_project 2 120941050 120966459 + MGP_CASTEiJ_P0056755 Rad51 protein_coding protein_coding MGP_CASTEiJ_T0056756.1 MGP_CASTEiJ_G0025513.1 mouse_genomes_project 2 120950386 120953336 + Rad51 protein_coding retained_intron MGP_CASTEiJ_T0056757.1 MGP_CASTEiJ_G0025513.1 mouse_genomes_project 2 120953042 120954089 + Rad51 protein_coding retained_intron MGP_CASTEiJ_T0003835.1 MGP_CASTEiJ_G0003432.1 mouse_genomes_project 2 33197207 33219110 + Gm13449 antisense antisense MGP_CASTEiJ_T0059690.1 MGP_CASTEiJ_G0026177.1 mouse_genomes_project 2 183548253 183564944 + MGP_CASTEiJ_P0059690 Slc17a9 protein_coding protein_coding MGP_CASTEiJ_T0059691.1 MGP_CASTEiJ_G0026177.1 mouse_genomes_project 2 183548369 183557090 + Slc17a9 protein_coding retained_intron MGP_CASTEiJ_T0059692.1 MGP_CASTEiJ_G0026177.1 mouse_genomes_project 2 183548390 183559760 + Slc17a9 protein_coding processed_transcript MGP_CASTEiJ_T0059693.1 MGP_CASTEiJ_G0026177.1 mouse_genomes_project 2 183559065 183563998 + Slc17a9 protein_coding processed_transcript MGP_CASTEiJ_T0059694.1 MGP_CASTEiJ_G0026177.1 mouse_genomes_project 2 183560921 183564076 + Slc17a9 protein_coding retained_intron MGP_CASTEiJ_T0003828.1 MGP_CASTEiJ_G0003428.1 mouse_genomes_project 2 31561793 31564206 + Gm13536 antisense antisense MGP_CASTEiJ_T0099654.1 MGP_CASTEiJ_G0036567.1 mouse_genomes_project 2 123085557 123085663 - Gm23858 snRNA snRNA MGP_CASTEiJ_T0010180.1 MGP_CASTEiJ_G0008368.1 mouse_genomes_project 2 147685502 147685593 - Gm24823 miRNA miRNA MGP_CASTEiJ_T0010165.1 MGP_CASTEiJ_G0008353.1 mouse_genomes_project 2 120031370 120031472 - Gm22800 miRNA miRNA MGP_CASTEiJ_T0052549.1 MGP_CASTEiJ_G0024563.1 mouse_genomes_project 2 12898252 13646394 + MGP_CASTEiJ_P0052549 protein_coding protein_coding MGP_CASTEiJ_T0001040.1 MGP_CASTEiJ_G0000976.1 mouse_genomes_project 2 68394769 68398557 + TEC TEC MGP_CASTEiJ_T0052760.1 MGP_CASTEiJ_G0024605.1 mouse_genomes_project 2 21779509 21795870 + MGP_CASTEiJ_P0052760 Il1rn protein_coding protein_coding MGP_CASTEiJ_T0052761.1 MGP_CASTEiJ_G0024605.1 mouse_genomes_project 2 21779512 21782066 + Il1rn protein_coding retained_intron MGP_CASTEiJ_T0052762.1 MGP_CASTEiJ_G0024605.1 mouse_genomes_project 2 21779512 21792695 + MGP_CASTEiJ_P0052762 Il1rn protein_coding protein_coding MGP_CASTEiJ_T0052763.1 MGP_CASTEiJ_G0024605.1 mouse_genomes_project 2 21788532 21793041 + MGP_CASTEiJ_P0052763 Il1rn protein_coding protein_coding MGP_CASTEiJ_T0052764.1 MGP_CASTEiJ_G0024605.1 mouse_genomes_project 2 21788554 21795312 + MGP_CASTEiJ_P0052764 Il1rn protein_coding protein_coding MGP_CASTEiJ_T0052765.1 MGP_CASTEiJ_G0024605.1 mouse_genomes_project 2 21788592 21789583 + Il1rn protein_coding processed_transcript MGP_CASTEiJ_T0099047.1 MGP_CASTEiJ_G0035962.1 mouse_genomes_project 2 183834790 183838140 + 9230112E08Rik sense_overlapping sense_overlapping MGP_CASTEiJ_T0099048.1 MGP_CASTEiJ_G0035962.1 mouse_genomes_project 2 183835097 183836457 + 9230112E08Rik sense_overlapping sense_overlapping MGP_CASTEiJ_T0013051.1 MGP_CASTEiJ_G0011214.1 mouse_genomes_project 2 17473319 17474761 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001048.1 MGP_CASTEiJ_G0000984.1 mouse_genomes_project 2 129556483 129557117 - TEC TEC MGP_CASTEiJ_T0001049.1 MGP_CASTEiJ_G0000984.1 mouse_genomes_project 2 129556771 129557095 - TEC TEC MGP_CASTEiJ_T0007143.1 MGP_CASTEiJ_G0005871.1 mouse_genomes_project 2 135079280 135097260 - Gm14095 lincRNA lincRNA MGP_CASTEiJ_T0100886.1 MGP_CASTEiJ_G0037799.1 mouse_genomes_project 2 81009621 81009752 + Gm22652 snoRNA snoRNA MGP_CASTEiJ_T0017138.1 MGP_CASTEiJ_G0014793.1 mouse_genomes_project 2 155645068 155673947 + Gm14164 processed_transcript processed_transcript MGP_CASTEiJ_T0017139.1 MGP_CASTEiJ_G0014793.1 mouse_genomes_project 2 155673370 155673771 + Gm14164 processed_transcript processed_transcript MGP_CASTEiJ_T0013093.1 MGP_CASTEiJ_G0011256.1 mouse_genomes_project 2 35687906 35688676 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059042.1 MGP_CASTEiJ_G0026020.1 mouse_genomes_project 2 168362253 168364797 - MGP_CASTEiJ_P0059042 Svs2 protein_coding protein_coding MGP_CASTEiJ_T0059043.1 MGP_CASTEiJ_G0026020.1 mouse_genomes_project 2 168362849 168364595 - MGP_CASTEiJ_P0059043 Svs2 protein_coding protein_coding MGP_CASTEiJ_T0059839.1 MGP_CASTEiJ_G0026202.1 mouse_genomes_project 2 184397397 184438304 + MGP_CASTEiJ_P0059839 Dnajc5 protein_coding protein_coding MGP_CASTEiJ_T0059840.1 MGP_CASTEiJ_G0026202.1 mouse_genomes_project 2 184397438 184435439 + MGP_CASTEiJ_P0059840 Dnajc5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059841.1 MGP_CASTEiJ_G0026202.1 mouse_genomes_project 2 184397463 184435437 + MGP_CASTEiJ_P0059841 Dnajc5 protein_coding protein_coding MGP_CASTEiJ_T0059842.1 MGP_CASTEiJ_G0026202.1 mouse_genomes_project 2 184397724 184431976 + MGP_CASTEiJ_P0059842 Dnajc5 protein_coding protein_coding MGP_CASTEiJ_T0059843.1 MGP_CASTEiJ_G0026202.1 mouse_genomes_project 2 184397859 184432794 + MGP_CASTEiJ_P0059843 Dnajc5 protein_coding protein_coding MGP_CASTEiJ_T0059844.1 MGP_CASTEiJ_G0026202.1 mouse_genomes_project 2 184432529 184433462 + Dnajc5 protein_coding processed_transcript MGP_CASTEiJ_T0054599.1 MGP_CASTEiJ_G0024922.1 mouse_genomes_project 2 48820514 48951502 + MGP_CASTEiJ_P0054599 Lypd6 protein_coding protein_coding MGP_CASTEiJ_T0054600.1 MGP_CASTEiJ_G0024922.1 mouse_genomes_project 2 48820547 48948596 + MGP_CASTEiJ_P0054600 Lypd6 protein_coding protein_coding MGP_CASTEiJ_T0054601.1 MGP_CASTEiJ_G0024922.1 mouse_genomes_project 2 48820549 48951497 + MGP_CASTEiJ_P0054601 Lypd6 protein_coding protein_coding MGP_CASTEiJ_T0054602.1 MGP_CASTEiJ_G0024922.1 mouse_genomes_project 2 48886803 48951496 + MGP_CASTEiJ_P0054602 Lypd6 protein_coding protein_coding MGP_CASTEiJ_T0054603.1 MGP_CASTEiJ_G0024922.1 mouse_genomes_project 2 48924329 48932188 + MGP_CASTEiJ_P0054603 Lypd6 protein_coding protein_coding MGP_CASTEiJ_T0059268.1 MGP_CASTEiJ_G0026077.1 mouse_genomes_project 2 170277418 170427356 - MGP_CASTEiJ_P0059268 Sulf2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059272.1 MGP_CASTEiJ_G0026077.1 mouse_genomes_project 2 170342254 170427967 - MGP_CASTEiJ_P0059272 Sulf2 protein_coding protein_coding MGP_CASTEiJ_T0059273.1 MGP_CASTEiJ_G0026077.1 mouse_genomes_project 2 170342543 170427140 - MGP_CASTEiJ_P0059273 Sulf2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059274.1 MGP_CASTEiJ_G0026077.1 mouse_genomes_project 2 170343061 170427589 - MGP_CASTEiJ_P0059274 Sulf2 protein_coding protein_coding MGP_CASTEiJ_T0059275.1 MGP_CASTEiJ_G0026077.1 mouse_genomes_project 2 170343290 170427909 - Sulf2 protein_coding processed_transcript MGP_CASTEiJ_T0059276.1 MGP_CASTEiJ_G0026077.1 mouse_genomes_project 2 170343810 170345156 - Sulf2 protein_coding retained_intron MGP_CASTEiJ_T0059277.1 MGP_CASTEiJ_G0026077.1 mouse_genomes_project 2 170343955 170347197 - Sulf2 protein_coding processed_transcript MGP_CASTEiJ_T0059278.1 MGP_CASTEiJ_G0026077.1 mouse_genomes_project 2 170364052 170427110 - Sulf2 protein_coding processed_transcript MGP_CASTEiJ_T0059279.1 MGP_CASTEiJ_G0026077.1 mouse_genomes_project 2 170404797 170426728 - Sulf2 protein_coding processed_transcript MGP_CASTEiJ_T0058879.1 MGP_CASTEiJ_G0025980.1 mouse_genomes_project 2 162647504 162716345 + MGP_CASTEiJ_P0058879 Dhx35 protein_coding protein_coding MGP_CASTEiJ_T0058880.1 MGP_CASTEiJ_G0025980.1 mouse_genomes_project 2 162647504 162716345 + MGP_CASTEiJ_P0058880 Dhx35 protein_coding protein_coding MGP_CASTEiJ_T0058881.1 MGP_CASTEiJ_G0025980.1 mouse_genomes_project 2 162647559 162716345 + Dhx35 protein_coding processed_transcript MGP_CASTEiJ_T0058882.1 MGP_CASTEiJ_G0025980.1 mouse_genomes_project 2 162647562 162704711 + Dhx35 protein_coding retained_intron MGP_CASTEiJ_T0058883.1 MGP_CASTEiJ_G0025980.1 mouse_genomes_project 2 162647582 162687554 + MGP_CASTEiJ_P0058883 Dhx35 protein_coding protein_coding MGP_CASTEiJ_T0058884.1 MGP_CASTEiJ_G0025980.1 mouse_genomes_project 2 162647588 162676330 + Dhx35 protein_coding processed_transcript MGP_CASTEiJ_T0058885.1 MGP_CASTEiJ_G0025980.1 mouse_genomes_project 2 162648618 162654366 + Dhx35 protein_coding processed_transcript MGP_CASTEiJ_T0058886.1 MGP_CASTEiJ_G0025980.1 mouse_genomes_project 2 162685374 162692895 + Dhx35 protein_coding processed_transcript MGP_CASTEiJ_T0058887.1 MGP_CASTEiJ_G0025980.1 mouse_genomes_project 2 162708392 162715499 + Dhx35 protein_coding processed_transcript MGP_CASTEiJ_T0057012.1 MGP_CASTEiJ_G0025560.1 mouse_genomes_project 2 122961591 122982256 - MGP_CASTEiJ_P0057012 Epb42 protein_coding protein_coding MGP_CASTEiJ_T0057013.1 MGP_CASTEiJ_G0025560.1 mouse_genomes_project 2 122961919 122966501 - Epb42 protein_coding processed_transcript MGP_CASTEiJ_T0057014.1 MGP_CASTEiJ_G0025560.1 mouse_genomes_project 2 122961919 122970956 - Epb42 protein_coding processed_transcript MGP_CASTEiJ_T0057015.1 MGP_CASTEiJ_G0025560.1 mouse_genomes_project 2 122963104 122965711 - Epb42 protein_coding retained_intron MGP_CASTEiJ_T0057016.1 MGP_CASTEiJ_G0025560.1 mouse_genomes_project 2 122967343 122982019 - MGP_CASTEiJ_P0057016 Epb42 protein_coding protein_coding MGP_CASTEiJ_T0057017.1 MGP_CASTEiJ_G0025560.1 mouse_genomes_project 2 122971402 122981865 - Epb42 protein_coding processed_transcript MGP_CASTEiJ_T0057018.1 MGP_CASTEiJ_G0025560.1 mouse_genomes_project 2 122977093 122981929 - Epb42 protein_coding processed_transcript MGP_CASTEiJ_T0010185.1 MGP_CASTEiJ_G0008373.1 mouse_genomes_project 2 156209792 156209852 + Mir5622 miRNA miRNA MGP_CASTEiJ_T0053333.1 MGP_CASTEiJ_G0024705.1 mouse_genomes_project 2 24693033 24703765 - MGP_CASTEiJ_P0053333 Tmem8c protein_coding protein_coding MGP_CASTEiJ_T0053334.1 MGP_CASTEiJ_G0024705.1 mouse_genomes_project 2 24693035 24699457 - MGP_CASTEiJ_P0053334 Tmem8c protein_coding protein_coding MGP_CASTEiJ_T0017072.1 MGP_CASTEiJ_G0014763.1 mouse_genomes_project 2 105004676 105013064 - 4930547E08Rik processed_transcript processed_transcript MGP_CASTEiJ_T0010133.1 MGP_CASTEiJ_G0008321.1 mouse_genomes_project 2 55700655 55700752 + Mir195b miRNA miRNA MGP_CASTEiJ_T0013428.1 MGP_CASTEiJ_G0011591.1 mouse_genomes_project 2 164797949 164798802 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003816.1 MGP_CASTEiJ_G0003416.1 mouse_genomes_project 2 28264088 28265711 + Gm16323 antisense antisense MGP_CASTEiJ_T0013271.1 MGP_CASTEiJ_G0011434.1 mouse_genomes_project 2 103326201 103327170 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053687.1 MGP_CASTEiJ_G0024764.1 mouse_genomes_project 2 28242616 28250891 + MGP_CASTEiJ_P0053687 Dolpp1 protein_coding protein_coding MGP_CASTEiJ_T0053688.1 MGP_CASTEiJ_G0024764.1 mouse_genomes_project 2 28242778 28250889 + MGP_CASTEiJ_P0053688 Dolpp1 protein_coding protein_coding MGP_CASTEiJ_T0053689.1 MGP_CASTEiJ_G0024764.1 mouse_genomes_project 2 28242778 28250889 + MGP_CASTEiJ_P0053689 Dolpp1 protein_coding protein_coding MGP_CASTEiJ_T0053690.1 MGP_CASTEiJ_G0024764.1 mouse_genomes_project 2 28242790 28247675 + Dolpp1 protein_coding retained_intron MGP_CASTEiJ_T0053691.1 MGP_CASTEiJ_G0024764.1 mouse_genomes_project 2 28242792 28246283 + Dolpp1 protein_coding retained_intron MGP_CASTEiJ_T0053692.1 MGP_CASTEiJ_G0024764.1 mouse_genomes_project 2 28242801 28250890 + MGP_CASTEiJ_P0053692 Dolpp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053693.1 MGP_CASTEiJ_G0024764.1 mouse_genomes_project 2 28242802 28246528 + Dolpp1 protein_coding retained_intron MGP_CASTEiJ_T0053694.1 MGP_CASTEiJ_G0024764.1 mouse_genomes_project 2 28242807 28250045 + MGP_CASTEiJ_P0053694 Dolpp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053695.1 MGP_CASTEiJ_G0024764.1 mouse_genomes_project 2 28242816 28248173 + Dolpp1 protein_coding retained_intron MGP_CASTEiJ_T0053696.1 MGP_CASTEiJ_G0024764.1 mouse_genomes_project 2 28245969 28250889 + Dolpp1 protein_coding processed_transcript MGP_CASTEiJ_T0053697.1 MGP_CASTEiJ_G0024764.1 mouse_genomes_project 2 28247780 28250349 + Dolpp1 protein_coding processed_transcript MGP_CASTEiJ_T0059561.1 MGP_CASTEiJ_G0026146.1 mouse_genomes_project 2 179524638 179527677 - MGP_CASTEiJ_P0059561 Atp5e protein_coding protein_coding MGP_CASTEiJ_T0059562.1 MGP_CASTEiJ_G0026146.1 mouse_genomes_project 2 179524641 179527621 - Atp5e protein_coding retained_intron MGP_CASTEiJ_T0059563.1 MGP_CASTEiJ_G0026146.1 mouse_genomes_project 2 179526086 179527661 - Atp5e protein_coding retained_intron MGP_CASTEiJ_T0059482.1 MGP_CASTEiJ_G0026125.1 mouse_genomes_project 2 177826282 177899973 - MGP_CASTEiJ_P0059482 Bmp7 protein_coding protein_coding MGP_CASTEiJ_T0059483.1 MGP_CASTEiJ_G0026125.1 mouse_genomes_project 2 177875811 177899745 - Bmp7 protein_coding retained_intron MGP_CASTEiJ_T0057724.1 MGP_CASTEiJ_G0025712.1 mouse_genomes_project 2 134064191 134080513 - MGP_CASTEiJ_P0057724 Adra1d protein_coding protein_coding MGP_CASTEiJ_T0003834.1 MGP_CASTEiJ_G0003431.1 mouse_genomes_project 2 32450700 32472816 + C79798 antisense antisense MGP_CASTEiJ_T0055721.1 MGP_CASTEiJ_G0025213.1 mouse_genomes_project 2 88321662 88322613 + MGP_CASTEiJ_P0055721 Olfr152 protein_coding protein_coding MGP_CASTEiJ_T0055722.1 MGP_CASTEiJ_G0025213.1 mouse_genomes_project 2 88321668 88322613 + MGP_CASTEiJ_P0055722 Olfr152 protein_coding protein_coding MGP_CASTEiJ_T0007230.1 MGP_CASTEiJ_G0005944.1 mouse_genomes_project 2 174004699 174011782 - 4930529I22Rik lincRNA lincRNA MGP_CASTEiJ_T0054722.1 MGP_CASTEiJ_G0024948.1 mouse_genomes_project 2 57542709 57622556 + Upp2 protein_coding processed_transcript MGP_CASTEiJ_T0054723.1 MGP_CASTEiJ_G0024948.1 mouse_genomes_project 2 57542729 57562037 + Upp2 protein_coding processed_transcript MGP_CASTEiJ_T0054724.1 MGP_CASTEiJ_G0024948.1 mouse_genomes_project 2 57542798 57771378 + MGP_CASTEiJ_P0054724 Upp2 protein_coding protein_coding MGP_CASTEiJ_T0054725.1 MGP_CASTEiJ_G0024948.1 mouse_genomes_project 2 57726489 57765038 + MGP_CASTEiJ_P0054725 Upp2 protein_coding protein_coding MGP_CASTEiJ_T0054726.1 MGP_CASTEiJ_G0024948.1 mouse_genomes_project 2 57726727 57764466 + MGP_CASTEiJ_P0054726 Upp2 protein_coding protein_coding MGP_CASTEiJ_T0054727.1 MGP_CASTEiJ_G0024948.1 mouse_genomes_project 2 57738966 57764100 + Upp2 protein_coding processed_transcript MGP_CASTEiJ_T0052937.1 MGP_CASTEiJ_G0024633.1 mouse_genomes_project 2 22820122 22853990 - MGP_CASTEiJ_P0052937 Grin1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052941.1 MGP_CASTEiJ_G0024633.1 mouse_genomes_project 2 22825114 22854161 - MGP_CASTEiJ_P0052941 Grin1 protein_coding protein_coding MGP_CASTEiJ_T0052942.1 MGP_CASTEiJ_G0024633.1 mouse_genomes_project 2 22825114 22854161 - MGP_CASTEiJ_P0052942 Grin1 protein_coding protein_coding MGP_CASTEiJ_T0052943.1 MGP_CASTEiJ_G0024633.1 mouse_genomes_project 2 22825114 22854161 - MGP_CASTEiJ_P0052943 Grin1 protein_coding protein_coding MGP_CASTEiJ_T0052944.1 MGP_CASTEiJ_G0024633.1 mouse_genomes_project 2 22825114 22854186 - MGP_CASTEiJ_P0052944 Grin1 protein_coding protein_coding MGP_CASTEiJ_T0052945.1 MGP_CASTEiJ_G0024633.1 mouse_genomes_project 2 22825114 22854186 - MGP_CASTEiJ_P0052945 Grin1 protein_coding protein_coding MGP_CASTEiJ_T0052946.1 MGP_CASTEiJ_G0024633.1 mouse_genomes_project 2 22825114 22854161 - MGP_CASTEiJ_P0052946 Grin1 protein_coding protein_coding MGP_CASTEiJ_T0052947.1 MGP_CASTEiJ_G0024633.1 mouse_genomes_project 2 22825114 22854186 - MGP_CASTEiJ_P0052947 Grin1 protein_coding protein_coding MGP_CASTEiJ_T0052948.1 MGP_CASTEiJ_G0024633.1 mouse_genomes_project 2 22825114 22854253 - MGP_CASTEiJ_P0052948 Grin1 protein_coding protein_coding MGP_CASTEiJ_T0052949.1 MGP_CASTEiJ_G0024633.1 mouse_genomes_project 2 22825290 22838851 - Grin1 protein_coding processed_transcript MGP_CASTEiJ_T0052950.1 MGP_CASTEiJ_G0024633.1 mouse_genomes_project 2 22825992 22830613 - Grin1 protein_coding processed_transcript MGP_CASTEiJ_T0052951.1 MGP_CASTEiJ_G0024633.1 mouse_genomes_project 2 22838546 22840151 - Grin1 protein_coding processed_transcript MGP_CASTEiJ_T0052952.1 MGP_CASTEiJ_G0024633.1 mouse_genomes_project 2 22838649 22840448 - Grin1 protein_coding processed_transcript MGP_CASTEiJ_T0052953.1 MGP_CASTEiJ_G0024633.1 mouse_genomes_project 2 22845878 22854192 - Grin1 protein_coding processed_transcript MGP_CASTEiJ_T0052954.1 MGP_CASTEiJ_G0024633.1 mouse_genomes_project 2 22849478 22854229 - Grin1 protein_coding processed_transcript MGP_CASTEiJ_T0054747.1 MGP_CASTEiJ_G0024951.1 mouse_genomes_project 2 58441731 58461535 + MGP_CASTEiJ_P0054747 Dapl1 protein_coding protein_coding MGP_CASTEiJ_T0054748.1 MGP_CASTEiJ_G0024951.1 mouse_genomes_project 2 58441747 58461535 + Dapl1 protein_coding processed_transcript MGP_CASTEiJ_T0013308.1 MGP_CASTEiJ_G0011471.1 mouse_genomes_project 2 113910135 113913402 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003946.1 MGP_CASTEiJ_G0003509.1 mouse_genomes_project 2 127404411 127416334 - Gm14002 antisense antisense MGP_CASTEiJ_T0057779.1 MGP_CASTEiJ_G0025724.1 mouse_genomes_project 2 135297917 135370454 + MGP_CASTEiJ_P0057779 1110034G24Rik protein_coding protein_coding MGP_CASTEiJ_T0057780.1 MGP_CASTEiJ_G0025724.1 mouse_genomes_project 2 135301137 135369902 + MGP_CASTEiJ_P0057780 1110034G24Rik protein_coding protein_coding MGP_CASTEiJ_T0057781.1 MGP_CASTEiJ_G0025724.1 mouse_genomes_project 2 135301263 135370454 + MGP_CASTEiJ_P0057781 1110034G24Rik protein_coding protein_coding MGP_CASTEiJ_T0057782.1 MGP_CASTEiJ_G0025724.1 mouse_genomes_project 2 135310657 135369981 + 1110034G24Rik protein_coding processed_transcript MGP_CASTEiJ_T0057818.1 MGP_CASTEiJ_G0025735.1 mouse_genomes_project 2 138364119 138455198 + Plcb4 protein_coding processed_transcript MGP_CASTEiJ_T0057819.1 MGP_CASTEiJ_G0025735.1 mouse_genomes_project 2 138364668 138455285 + Plcb4 protein_coding processed_transcript MGP_CASTEiJ_T0057820.1 MGP_CASTEiJ_G0025735.1 mouse_genomes_project 2 138366341 138597744 + Plcb4 protein_coding retained_intron MGP_CASTEiJ_T0057821.1 MGP_CASTEiJ_G0025735.1 mouse_genomes_project 2 138366431 138708998 + MGP_CASTEiJ_P0057821 Plcb4 protein_coding protein_coding MGP_CASTEiJ_T0057822.1 MGP_CASTEiJ_G0025735.1 mouse_genomes_project 2 138454276 138630359 + Plcb4 protein_coding retained_intron MGP_CASTEiJ_T0057823.1 MGP_CASTEiJ_G0025735.1 mouse_genomes_project 2 138454276 138744471 + MGP_CASTEiJ_P0057823 Plcb4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057824.1 MGP_CASTEiJ_G0025735.1 mouse_genomes_project 2 138478583 138628283 + Plcb4 protein_coding processed_transcript MGP_CASTEiJ_T0057825.1 MGP_CASTEiJ_G0025735.1 mouse_genomes_project 2 138524979 138744270 + MGP_CASTEiJ_P0057825 Plcb4 protein_coding protein_coding MGP_CASTEiJ_T0057826.1 MGP_CASTEiJ_G0025735.1 mouse_genomes_project 2 138591891 138745794 + MGP_CASTEiJ_P0057826 Plcb4 protein_coding protein_coding MGP_CASTEiJ_T0057827.1 MGP_CASTEiJ_G0025735.1 mouse_genomes_project 2 138607590 138662927 + Plcb4 protein_coding processed_transcript MGP_CASTEiJ_T0057828.1 MGP_CASTEiJ_G0025735.1 mouse_genomes_project 2 138665703 138673993 + Plcb4 protein_coding processed_transcript MGP_CASTEiJ_T0057829.1 MGP_CASTEiJ_G0025735.1 mouse_genomes_project 2 138670109 138673946 + Plcb4 protein_coding processed_transcript MGP_CASTEiJ_T0057830.1 MGP_CASTEiJ_G0025735.1 mouse_genomes_project 2 138709013 138716891 + Plcb4 protein_coding processed_transcript MGP_CASTEiJ_T0057831.1 MGP_CASTEiJ_G0025735.1 mouse_genomes_project 2 138716570 138745785 + MGP_CASTEiJ_P0057831 Plcb4 protein_coding protein_coding MGP_CASTEiJ_T0057832.1 MGP_CASTEiJ_G0025735.1 mouse_genomes_project 2 138738454 138739270 + Plcb4 protein_coding processed_transcript MGP_CASTEiJ_T0013107.1 MGP_CASTEiJ_G0011270.1 mouse_genomes_project 2 38471004 38471371 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055851.1 MGP_CASTEiJ_G0025316.1 mouse_genomes_project 2 91502531 91563318 + MGP_CASTEiJ_P0055851 Nup160 protein_coding protein_coding MGP_CASTEiJ_T0055852.1 MGP_CASTEiJ_G0025316.1 mouse_genomes_project 2 91510489 91519983 + Nup160 protein_coding processed_transcript MGP_CASTEiJ_T0055853.1 MGP_CASTEiJ_G0025316.1 mouse_genomes_project 2 91516603 91521703 + Nup160 protein_coding processed_transcript MGP_CASTEiJ_T0055854.1 MGP_CASTEiJ_G0025316.1 mouse_genomes_project 2 91517592 91529713 + Nup160 protein_coding processed_transcript MGP_CASTEiJ_T0055855.1 MGP_CASTEiJ_G0025316.1 mouse_genomes_project 2 91526996 91529325 + Nup160 protein_coding processed_transcript MGP_CASTEiJ_T0055856.1 MGP_CASTEiJ_G0025316.1 mouse_genomes_project 2 91544546 91544899 + Nup160 protein_coding processed_transcript MGP_CASTEiJ_T0055857.1 MGP_CASTEiJ_G0025316.1 mouse_genomes_project 2 91559713 91562774 + Nup160 protein_coding processed_transcript MGP_CASTEiJ_T0013317.1 MGP_CASTEiJ_G0011480.1 mouse_genomes_project 2 121009508 121013619 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052622.1 MGP_CASTEiJ_G0024575.1 mouse_genomes_project 2 16313015 16471520 - MGP_CASTEiJ_P0052622 Pip4k2a protein_coding unknown_likely_coding MGP_CASTEiJ_T0052623.1 MGP_CASTEiJ_G0024575.1 mouse_genomes_project 2 16318202 16471558 - MGP_CASTEiJ_P0052623 Pip4k2a protein_coding protein_coding MGP_CASTEiJ_T0052624.1 MGP_CASTEiJ_G0024575.1 mouse_genomes_project 2 16320318 16341958 - MGP_CASTEiJ_P0052624 Pip4k2a protein_coding protein_coding MGP_CASTEiJ_T0052625.1 MGP_CASTEiJ_G0024575.1 mouse_genomes_project 2 16323446 16378591 - MGP_CASTEiJ_P0052625 Pip4k2a protein_coding protein_coding MGP_CASTEiJ_T0013321.1 MGP_CASTEiJ_G0011484.1 mouse_genomes_project 2 123365427 123365674 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054934.1 MGP_CASTEiJ_G0024977.1 mouse_genomes_project 2 65044129 65247934 + MGP_CASTEiJ_P0054934 Csrnp3 protein_coding protein_coding MGP_CASTEiJ_T0054935.1 MGP_CASTEiJ_G0024977.1 mouse_genomes_project 2 65044204 65242017 + MGP_CASTEiJ_P0054935 Csrnp3 protein_coding protein_coding MGP_CASTEiJ_T0054936.1 MGP_CASTEiJ_G0024977.1 mouse_genomes_project 2 65044207 65082576 + Csrnp3 protein_coding retained_intron MGP_CASTEiJ_T0054937.1 MGP_CASTEiJ_G0024977.1 mouse_genomes_project 2 65044217 65239688 + MGP_CASTEiJ_P0054937 Csrnp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054938.1 MGP_CASTEiJ_G0024977.1 mouse_genomes_project 2 65062309 65156557 + Csrnp3 protein_coding retained_intron MGP_CASTEiJ_T0054939.1 MGP_CASTEiJ_G0024977.1 mouse_genomes_project 2 65136792 65240356 + MGP_CASTEiJ_P0054939 Csrnp3 protein_coding protein_coding MGP_CASTEiJ_T0054940.1 MGP_CASTEiJ_G0024977.1 mouse_genomes_project 2 65138369 65239894 + MGP_CASTEiJ_P0054940 Csrnp3 protein_coding protein_coding MGP_CASTEiJ_T0054941.1 MGP_CASTEiJ_G0024977.1 mouse_genomes_project 2 65156066 65239460 + MGP_CASTEiJ_P0054941 Csrnp3 protein_coding protein_coding MGP_CASTEiJ_T0055413.1 MGP_CASTEiJ_G0025071.1 mouse_genomes_project 2 79441120 79448979 - MGP_CASTEiJ_P0055413 Cerkl protein_coding protein_coding MGP_CASTEiJ_T0055414.1 MGP_CASTEiJ_G0025071.1 mouse_genomes_project 2 79442328 79545893 - Cerkl protein_coding processed_transcript MGP_CASTEiJ_T0055415.1 MGP_CASTEiJ_G0025071.1 mouse_genomes_project 2 79443078 79444256 - Cerkl protein_coding processed_transcript MGP_CASTEiJ_T0055416.1 MGP_CASTEiJ_G0025071.1 mouse_genomes_project 2 79443106 79545830 - MGP_CASTEiJ_P0055416 Cerkl protein_coding protein_coding MGP_CASTEiJ_T0055417.1 MGP_CASTEiJ_G0025071.1 mouse_genomes_project 2 79443169 79545846 - Cerkl protein_coding processed_transcript MGP_CASTEiJ_T0055418.1 MGP_CASTEiJ_G0025071.1 mouse_genomes_project 2 79443169 79545830 - Cerkl protein_coding processed_transcript MGP_CASTEiJ_T0055419.1 MGP_CASTEiJ_G0025071.1 mouse_genomes_project 2 79443171 79545936 - Cerkl protein_coding processed_transcript MGP_CASTEiJ_T0055420.1 MGP_CASTEiJ_G0025071.1 mouse_genomes_project 2 79448944 79569955 - Cerkl protein_coding processed_transcript MGP_CASTEiJ_T0055421.1 MGP_CASTEiJ_G0025071.1 mouse_genomes_project 2 79453483 79483387 - Cerkl protein_coding processed_transcript MGP_CASTEiJ_T0055422.1 MGP_CASTEiJ_G0025071.1 mouse_genomes_project 2 79465039 79483412 - Cerkl protein_coding processed_transcript MGP_CASTEiJ_T0055423.1 MGP_CASTEiJ_G0025071.1 mouse_genomes_project 2 79499772 79503383 - Cerkl protein_coding processed_transcript MGP_CASTEiJ_T0055424.1 MGP_CASTEiJ_G0025071.1 mouse_genomes_project 2 79501091 79506181 - Cerkl protein_coding processed_transcript MGP_CASTEiJ_T0057980.1 MGP_CASTEiJ_G0025770.1 mouse_genomes_project 2 147658255 147659568 + MGP_CASTEiJ_P0057980 Gm561 protein_coding protein_coding MGP_CASTEiJ_T0055577.1 MGP_CASTEiJ_G0025107.1 mouse_genomes_project 2 85225237 85228231 + MGP_CASTEiJ_P0055577 Slc43a3 protein_coding protein_coding MGP_CASTEiJ_T0055578.1 MGP_CASTEiJ_G0025107.1 mouse_genomes_project 2 85225275 85228727 + MGP_CASTEiJ_P0055578 Slc43a3 protein_coding protein_coding MGP_CASTEiJ_T0055579.1 MGP_CASTEiJ_G0025107.1 mouse_genomes_project 2 85225304 85234972 + MGP_CASTEiJ_P0055579 Slc43a3 protein_coding protein_coding MGP_CASTEiJ_T0055580.1 MGP_CASTEiJ_G0025107.1 mouse_genomes_project 2 85225322 85250436 + MGP_CASTEiJ_P0055580 Slc43a3 protein_coding protein_coding MGP_CASTEiJ_T0055581.1 MGP_CASTEiJ_G0025107.1 mouse_genomes_project 2 85225347 85228078 + Slc43a3 protein_coding processed_transcript MGP_CASTEiJ_T0055582.1 MGP_CASTEiJ_G0025107.1 mouse_genomes_project 2 85227288 85238516 + Slc43a3 protein_coding retained_intron MGP_CASTEiJ_T0054352.1 MGP_CASTEiJ_G0024864.1 mouse_genomes_project 2 34744857 34745796 + MGP_CASTEiJ_P0054352 Olfr342 protein_coding protein_coding MGP_CASTEiJ_T0010149.1 MGP_CASTEiJ_G0008337.1 mouse_genomes_project 2 93362370 93362433 - Mir7000 miRNA miRNA MGP_CASTEiJ_T0099631.1 MGP_CASTEiJ_G0036544.1 mouse_genomes_project 2 36747755 36747863 + Gm25081 snRNA snRNA MGP_CASTEiJ_T0055733.1 MGP_CASTEiJ_G0025224.1 mouse_genomes_project 2 88534909 88536123 + MGP_CASTEiJ_P0055733 Olfr1158 protein_coding protein_coding MGP_CASTEiJ_T0010054.1 MGP_CASTEiJ_G0008242.1 mouse_genomes_project 2 7720099 7720193 + Mir466f-1 miRNA miRNA MGP_CASTEiJ_T0054405.1 MGP_CASTEiJ_G0024894.1 mouse_genomes_project 2 35718465 35719305 + Gpr21 protein_coding processed_transcript MGP_CASTEiJ_T0054407.1 MGP_CASTEiJ_G0024894.1 mouse_genomes_project 2 35718759 35722679 + MGP_CASTEiJ_P0054407 Gpr21 protein_coding protein_coding MGP_CASTEiJ_T0059410.1 MGP_CASTEiJ_G0026104.1 mouse_genomes_project 2 173130854 173258530 - MGP_CASTEiJ_P0059410 Atp9a protein_coding protein_coding MGP_CASTEiJ_T0059411.1 MGP_CASTEiJ_G0026104.1 mouse_genomes_project 2 173130854 173252700 - MGP_CASTEiJ_P0059411 Atp9a protein_coding protein_coding MGP_CASTEiJ_T0059412.1 MGP_CASTEiJ_G0026104.1 mouse_genomes_project 2 173130854 173243104 - MGP_CASTEiJ_P0059412 Atp9a protein_coding protein_coding MGP_CASTEiJ_T0059413.1 MGP_CASTEiJ_G0026104.1 mouse_genomes_project 2 173130854 173258353 - MGP_CASTEiJ_P0059413 Atp9a protein_coding protein_coding MGP_CASTEiJ_T0059414.1 MGP_CASTEiJ_G0026104.1 mouse_genomes_project 2 173130879 173258355 - MGP_CASTEiJ_P0059414 Atp9a protein_coding protein_coding MGP_CASTEiJ_T0059415.1 MGP_CASTEiJ_G0026104.1 mouse_genomes_project 2 173161313 173170308 - Atp9a protein_coding processed_transcript MGP_CASTEiJ_T0059416.1 MGP_CASTEiJ_G0026104.1 mouse_genomes_project 2 173167055 173252700 - Atp9a protein_coding retained_intron MGP_CASTEiJ_T0059417.1 MGP_CASTEiJ_G0026104.1 mouse_genomes_project 2 173192843 173258772 - MGP_CASTEiJ_P0059417 Atp9a protein_coding protein_coding MGP_CASTEiJ_T0059418.1 MGP_CASTEiJ_G0026104.1 mouse_genomes_project 2 173192851 173258806 - MGP_CASTEiJ_P0059418 Atp9a protein_coding protein_coding MGP_CASTEiJ_T0059419.1 MGP_CASTEiJ_G0026104.1 mouse_genomes_project 2 173207118 173218883 - MGP_CASTEiJ_P0059419 Atp9a protein_coding protein_coding MGP_CASTEiJ_T0059420.1 MGP_CASTEiJ_G0026104.1 mouse_genomes_project 2 173207185 173218932 - MGP_CASTEiJ_P0059420 Atp9a protein_coding protein_coding MGP_CASTEiJ_T0055408.1 MGP_CASTEiJ_G0025070.1 mouse_genomes_project 2 79356983 79359427 + Itga4 protein_coding processed_transcript MGP_CASTEiJ_T0055409.1 MGP_CASTEiJ_G0025070.1 mouse_genomes_project 2 79357057 79443700 + MGP_CASTEiJ_P0055409 Itga4 protein_coding protein_coding MGP_CASTEiJ_T0055410.1 MGP_CASTEiJ_G0025070.1 mouse_genomes_project 2 79357129 79378282 + Itga4 protein_coding processed_transcript MGP_CASTEiJ_T0055411.1 MGP_CASTEiJ_G0025070.1 mouse_genomes_project 2 79357278 79403578 + Itga4 protein_coding processed_transcript MGP_CASTEiJ_T0055412.1 MGP_CASTEiJ_G0025070.1 mouse_genomes_project 2 79357504 79403282 + Itga4 protein_coding processed_transcript MGP_CASTEiJ_T0059670.1 MGP_CASTEiJ_G0026173.1 mouse_genomes_project 2 183412330 183437687 + MGP_CASTEiJ_P0059670 Col9a3 protein_coding protein_coding MGP_CASTEiJ_T0059671.1 MGP_CASTEiJ_G0026173.1 mouse_genomes_project 2 183412762 183437683 + MGP_CASTEiJ_P0059671 Col9a3 protein_coding protein_coding MGP_CASTEiJ_T0059672.1 MGP_CASTEiJ_G0026173.1 mouse_genomes_project 2 183413346 183421355 + Col9a3 protein_coding retained_intron MGP_CASTEiJ_T0059673.1 MGP_CASTEiJ_G0026173.1 mouse_genomes_project 2 183418757 183428974 + Col9a3 protein_coding retained_intron MGP_CASTEiJ_T0059674.1 MGP_CASTEiJ_G0026173.1 mouse_genomes_project 2 183429662 183436796 + Col9a3 protein_coding retained_intron MGP_CASTEiJ_T0059675.1 MGP_CASTEiJ_G0026173.1 mouse_genomes_project 2 183431821 183437100 + Col9a3 protein_coding retained_intron MGP_CASTEiJ_T0010198.1 MGP_CASTEiJ_G0008386.1 mouse_genomes_project 2 172506761 172506839 - Gm24327 miRNA miRNA MGP_CASTEiJ_T0001001.1 MGP_CASTEiJ_G0000937.1 mouse_genomes_project 2 11344657 11348608 - TEC TEC MGP_CASTEiJ_T0098857.1 MGP_CASTEiJ_G0035782.1 mouse_genomes_project 2 309479 313821 - Gm37525 sense_intronic sense_intronic MGP_CASTEiJ_T0013414.1 MGP_CASTEiJ_G0011577.1 mouse_genomes_project 2 159975105 159975383 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056146.1 MGP_CASTEiJ_G0025358.1 mouse_genomes_project 2 93990594 94073772 - MGP_CASTEiJ_P0056146 Prdm11 protein_coding protein_coding MGP_CASTEiJ_T0056147.1 MGP_CASTEiJ_G0025358.1 mouse_genomes_project 2 94000329 94074345 - MGP_CASTEiJ_P0056147 Prdm11 protein_coding protein_coding MGP_CASTEiJ_T0056148.1 MGP_CASTEiJ_G0025358.1 mouse_genomes_project 2 94010160 94074448 - MGP_CASTEiJ_P0056148 Prdm11 protein_coding protein_coding MGP_CASTEiJ_T0056149.1 MGP_CASTEiJ_G0025358.1 mouse_genomes_project 2 94035875 94039298 - Prdm11 protein_coding processed_transcript MGP_CASTEiJ_T0056150.1 MGP_CASTEiJ_G0025358.1 mouse_genomes_project 2 94037989 94074368 - MGP_CASTEiJ_P0056150 Prdm11 protein_coding protein_coding MGP_CASTEiJ_T0007068.1 MGP_CASTEiJ_G0005812.1 mouse_genomes_project 2 84760623 84787086 - Gm13710 lincRNA lincRNA MGP_CASTEiJ_T0013395.1 MGP_CASTEiJ_G0011558.1 mouse_genomes_project 2 154158819 154159302 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056626.1 MGP_CASTEiJ_G0025486.1 mouse_genomes_project 2 116095106 116236232 - MGP_CASTEiJ_P0056626 Dph6 protein_coding protein_coding MGP_CASTEiJ_T0056627.1 MGP_CASTEiJ_G0025486.1 mouse_genomes_project 2 116096633 116125207 - Dph6 protein_coding processed_transcript MGP_CASTEiJ_T0056628.1 MGP_CASTEiJ_G0025486.1 mouse_genomes_project 2 116096727 116236190 - MGP_CASTEiJ_P0056628 Dph6 protein_coding protein_coding MGP_CASTEiJ_T0056629.1 MGP_CASTEiJ_G0025486.1 mouse_genomes_project 2 116099683 116236307 - Dph6 protein_coding retained_intron MGP_CASTEiJ_T0056630.1 MGP_CASTEiJ_G0025486.1 mouse_genomes_project 2 116222496 116236250 - Dph6 protein_coding retained_intron MGP_CASTEiJ_T0059580.1 MGP_CASTEiJ_G0026151.1 mouse_genomes_project 2 181064141 181135721 - MGP_CASTEiJ_P0059580 protein_coding protein_coding MGP_CASTEiJ_T0059581.1 MGP_CASTEiJ_G0026151.1 mouse_genomes_project 2 181064979 181095751 - protein_coding processed_transcript MGP_CASTEiJ_T0059582.1 MGP_CASTEiJ_G0026151.1 mouse_genomes_project 2 181089023 181096091 - protein_coding retained_intron MGP_CASTEiJ_T0059583.1 MGP_CASTEiJ_G0026151.1 mouse_genomes_project 2 181121611 181135458 - MGP_CASTEiJ_P0059583 protein_coding protein_coding MGP_CASTEiJ_T0056310.1 MGP_CASTEiJ_G0025388.1 mouse_genomes_project 2 104445837 104485780 - MGP_CASTEiJ_P0056310 Ehf protein_coding protein_coding MGP_CASTEiJ_T0056311.1 MGP_CASTEiJ_G0025388.1 mouse_genomes_project 2 104446429 104485668 - MGP_CASTEiJ_P0056311 Ehf protein_coding protein_coding MGP_CASTEiJ_T0056312.1 MGP_CASTEiJ_G0025388.1 mouse_genomes_project 2 104448971 104466245 - MGP_CASTEiJ_P0056312 Ehf protein_coding protein_coding MGP_CASTEiJ_T0056313.1 MGP_CASTEiJ_G0025388.1 mouse_genomes_project 2 104449175 104456738 - Ehf protein_coding retained_intron MGP_CASTEiJ_T0056314.1 MGP_CASTEiJ_G0025388.1 mouse_genomes_project 2 104449543 104482065 - MGP_CASTEiJ_P0056314 Ehf protein_coding protein_coding MGP_CASTEiJ_T0056315.1 MGP_CASTEiJ_G0025388.1 mouse_genomes_project 2 104456589 104473455 - MGP_CASTEiJ_P0056315 Ehf protein_coding protein_coding MGP_CASTEiJ_T0056316.1 MGP_CASTEiJ_G0025388.1 mouse_genomes_project 2 104459277 104485422 - MGP_CASTEiJ_P0056316 Ehf protein_coding protein_coding MGP_CASTEiJ_T0056317.1 MGP_CASTEiJ_G0025388.1 mouse_genomes_project 2 104461603 104485669 - Ehf protein_coding retained_intron MGP_CASTEiJ_T0054151.1 MGP_CASTEiJ_G0024830.1 mouse_genomes_project 2 31565279 31577992 - MGP_CASTEiJ_P0054151 Zbtb43 protein_coding protein_coding MGP_CASTEiJ_T0054152.1 MGP_CASTEiJ_G0024830.1 mouse_genomes_project 2 31565279 31585618 - MGP_CASTEiJ_P0054152 Zbtb43 protein_coding protein_coding MGP_CASTEiJ_T0054153.1 MGP_CASTEiJ_G0024830.1 mouse_genomes_project 2 31568510 31585591 - MGP_CASTEiJ_P0054153 Zbtb43 protein_coding protein_coding MGP_CASTEiJ_T0054154.1 MGP_CASTEiJ_G0024830.1 mouse_genomes_project 2 31569611 31582174 - MGP_CASTEiJ_P0054154 Zbtb43 protein_coding protein_coding MGP_CASTEiJ_T0054155.1 MGP_CASTEiJ_G0024830.1 mouse_genomes_project 2 31569880 31585645 - MGP_CASTEiJ_P0054155 Zbtb43 protein_coding protein_coding MGP_CASTEiJ_T0059088.1 MGP_CASTEiJ_G0026036.1 mouse_genomes_project 2 168745707 168751136 - MGP_CASTEiJ_P0059088 Eppin protein_coding protein_coding MGP_CASTEiJ_T0098370.1 MGP_CASTEiJ_G0035301.1 mouse_genomes_project 2 27530364 27530695 - pseudogene pseudogene MGP_CASTEiJ_T0058608.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159718576 159758680 - MGP_CASTEiJ_P0058608 Cpne1 protein_coding protein_coding MGP_CASTEiJ_T0058609.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159718579 159758633 - Cpne1 protein_coding retained_intron MGP_CASTEiJ_T0058610.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159718579 159758684 - MGP_CASTEiJ_P0058610 Cpne1 protein_coding protein_coding MGP_CASTEiJ_T0058613.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159718581 159758688 - MGP_CASTEiJ_P0058613 Cpne1 protein_coding protein_coding MGP_CASTEiJ_T0058614.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159720056 159721022 - Cpne1 protein_coding processed_transcript MGP_CASTEiJ_T0058615.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159720078 159758646 - MGP_CASTEiJ_P0058615 Cpne1 protein_coding protein_coding MGP_CASTEiJ_T0058616.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159720112 159723038 - MGP_CASTEiJ_P0058616 Cpne1 protein_coding protein_coding MGP_CASTEiJ_T0058617.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159720117 159723063 - Cpne1 protein_coding retained_intron MGP_CASTEiJ_T0058618.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159720234 159758649 - MGP_CASTEiJ_P0058618 Cpne1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058619.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159720239 159724937 - MGP_CASTEiJ_P0058619 Cpne1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058620.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159720824 159723335 - Cpne1 protein_coding retained_intron MGP_CASTEiJ_T0058621.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159720927 159758710 - MGP_CASTEiJ_P0058621 Cpne1 protein_coding protein_coding MGP_CASTEiJ_T0058622.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159724181 159758654 - MGP_CASTEiJ_P0058622 Cpne1 protein_coding protein_coding MGP_CASTEiJ_T0058623.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159724202 159725370 - Cpne1 protein_coding retained_intron MGP_CASTEiJ_T0058624.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159724943 159758704 - MGP_CASTEiJ_P0058624 Cpne1 protein_coding protein_coding MGP_CASTEiJ_T0058625.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159725352 159758654 - MGP_CASTEiJ_P0058625 Cpne1 protein_coding protein_coding MGP_CASTEiJ_T0058626.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159725678 159758608 - MGP_CASTEiJ_P0058626 Cpne1 protein_coding protein_coding MGP_CASTEiJ_T0058627.1 MGP_CASTEiJ_G0025934.1 mouse_genomes_project 2 159725689 159749414 - MGP_CASTEiJ_P0058627 Cpne1 protein_coding protein_coding MGP_CASTEiJ_T0013424.1 MGP_CASTEiJ_G0011587.1 mouse_genomes_project 2 162236236 162236525 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003865.1 MGP_CASTEiJ_G0003456.1 mouse_genomes_project 2 66640491 66722945 - Gm13599 antisense antisense MGP_CASTEiJ_T0055524.1 MGP_CASTEiJ_G0025092.1 mouse_genomes_project 2 84853304 84941821 - MGP_CASTEiJ_P0055524 protein_coding protein_coding MGP_CASTEiJ_T0058302.1 MGP_CASTEiJ_G0025866.1 mouse_genomes_project 2 156460827 156504646 + MGP_CASTEiJ_P0058302 Hck protein_coding protein_coding MGP_CASTEiJ_T0058303.1 MGP_CASTEiJ_G0025866.1 mouse_genomes_project 2 156460827 156504648 + MGP_CASTEiJ_P0058303 Hck protein_coding protein_coding MGP_CASTEiJ_T0010106.1 MGP_CASTEiJ_G0008294.1 mouse_genomes_project 2 25039386 25039486 + Gm24049 miRNA miRNA MGP_CASTEiJ_T0011198.1 MGP_CASTEiJ_G0009386.1 mouse_genomes_project 2 183677420 183677538 + Gm22842 misc_RNA misc_RNA MGP_CASTEiJ_T0098753.1 MGP_CASTEiJ_G0035684.1 mouse_genomes_project 2 108177716 108177839 + Gm22813 scaRNA scaRNA MGP_CASTEiJ_T0056380.1 MGP_CASTEiJ_G0025400.1 mouse_genomes_project 2 105344721 105346709 + MGP_CASTEiJ_P0056380 A930018P22Rik protein_coding protein_coding MGP_CASTEiJ_T0102222.1 MGP_CASTEiJ_G0038947.1 mouse_genomes_project 2 86506044 86507076 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0098860.1 MGP_CASTEiJ_G0035785.1 mouse_genomes_project 2 1119958 1123610 + Gm37814 sense_intronic sense_intronic MGP_CASTEiJ_T0017079.1 MGP_CASTEiJ_G0014765.1 mouse_genomes_project 2 107990596 107991062 - processed_transcript processed_transcript MGP_CASTEiJ_T0017080.1 MGP_CASTEiJ_G0014765.1 mouse_genomes_project 2 107990599 108002083 - processed_transcript processed_transcript MGP_CASTEiJ_T0017081.1 MGP_CASTEiJ_G0014765.1 mouse_genomes_project 2 107994893 108002053 - processed_transcript processed_transcript MGP_CASTEiJ_T0001056.1 MGP_CASTEiJ_G0000991.1 mouse_genomes_project 2 174241682 174245941 - TEC TEC MGP_CASTEiJ_T0056067.1 MGP_CASTEiJ_G0025344.1 mouse_genomes_project 2 92866311 92867751 + MGP_CASTEiJ_P0056067 Chrm4 protein_coding protein_coding MGP_CASTEiJ_T0013052.1 MGP_CASTEiJ_G0011215.1 mouse_genomes_project 2 17548430 17549229 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007038.1 MGP_CASTEiJ_G0005789.1 mouse_genomes_project 2 72447899 72527042 - 6430710C18Rik lincRNA lincRNA MGP_CASTEiJ_T0007039.1 MGP_CASTEiJ_G0005789.1 mouse_genomes_project 2 72448558 72452912 - 6430710C18Rik lincRNA lincRNA MGP_CASTEiJ_T0007040.1 MGP_CASTEiJ_G0005789.1 mouse_genomes_project 2 72487891 72527087 - 6430710C18Rik lincRNA lincRNA MGP_CASTEiJ_T0007041.1 MGP_CASTEiJ_G0005789.1 mouse_genomes_project 2 72488208 72503774 - 6430710C18Rik lincRNA lincRNA MGP_CASTEiJ_T0055609.1 MGP_CASTEiJ_G0025114.1 mouse_genomes_project 2 85460728 85498242 - MGP_CASTEiJ_P0055609 Lrrc55 protein_coding protein_coding MGP_CASTEiJ_T0055610.1 MGP_CASTEiJ_G0025114.1 mouse_genomes_project 2 85489621 85498242 - MGP_CASTEiJ_P0055610 Lrrc55 protein_coding protein_coding MGP_CASTEiJ_T0054688.1 MGP_CASTEiJ_G0024940.1 mouse_genomes_project 2 56019817 56037270 - MGP_CASTEiJ_P0054688 Nr4a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054689.1 MGP_CASTEiJ_G0024940.1 mouse_genomes_project 2 56021437 56028268 - MGP_CASTEiJ_P0054689 Nr4a2 protein_coding protein_coding MGP_CASTEiJ_T0054690.1 MGP_CASTEiJ_G0024940.1 mouse_genomes_project 2 56025291 56028326 - Nr4a2 protein_coding processed_transcript MGP_CASTEiJ_T0054691.1 MGP_CASTEiJ_G0024940.1 mouse_genomes_project 2 56026278 56027662 - Nr4a2 protein_coding processed_transcript MGP_CASTEiJ_T0052554.1 MGP_CASTEiJ_G0024565.1 mouse_genomes_project 2 14727987 15117258 - MGP_CASTEiJ_P0052554 protein_coding protein_coding MGP_CASTEiJ_T0052555.1 MGP_CASTEiJ_G0024565.1 mouse_genomes_project 2 14728132 14851637 - MGP_CASTEiJ_P0052555 protein_coding protein_coding MGP_CASTEiJ_T0052556.1 MGP_CASTEiJ_G0024565.1 mouse_genomes_project 2 14732787 14746371 - protein_coding processed_transcript MGP_CASTEiJ_T0052557.1 MGP_CASTEiJ_G0024565.1 mouse_genomes_project 2 14732787 14851244 - MGP_CASTEiJ_P0052557 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052558.1 MGP_CASTEiJ_G0024565.1 mouse_genomes_project 2 14734849 14920348 - MGP_CASTEiJ_P0052558 protein_coding protein_coding MGP_CASTEiJ_T0052559.1 MGP_CASTEiJ_G0024565.1 mouse_genomes_project 2 14761171 14776460 - protein_coding processed_transcript MGP_CASTEiJ_T0052560.1 MGP_CASTEiJ_G0024565.1 mouse_genomes_project 2 14762789 14776503 - protein_coding processed_transcript MGP_CASTEiJ_T0052561.1 MGP_CASTEiJ_G0024565.1 mouse_genomes_project 2 14763046 14776529 - MGP_CASTEiJ_P0052561 protein_coding protein_coding MGP_CASTEiJ_T0052562.1 MGP_CASTEiJ_G0024565.1 mouse_genomes_project 2 14765779 14776490 - protein_coding processed_transcript MGP_CASTEiJ_T0052563.1 MGP_CASTEiJ_G0024565.1 mouse_genomes_project 2 14778447 14853492 - MGP_CASTEiJ_P0052563 protein_coding protein_coding MGP_CASTEiJ_T0052564.1 MGP_CASTEiJ_G0024565.1 mouse_genomes_project 2 14778450 14853494 - MGP_CASTEiJ_P0052564 protein_coding protein_coding MGP_CASTEiJ_T0052565.1 MGP_CASTEiJ_G0024565.1 mouse_genomes_project 2 14783701 14851327 - MGP_CASTEiJ_P0052565 protein_coding protein_coding MGP_CASTEiJ_T0052566.1 MGP_CASTEiJ_G0024565.1 mouse_genomes_project 2 14821057 14918689 - protein_coding processed_transcript MGP_CASTEiJ_T0052567.1 MGP_CASTEiJ_G0024565.1 mouse_genomes_project 2 15113589 15117673 - protein_coding processed_transcript MGP_CASTEiJ_T0000993.1 MGP_CASTEiJ_G0000929.1 mouse_genomes_project 2 9662949 9665549 - TEC TEC MGP_CASTEiJ_T0010125.1 MGP_CASTEiJ_G0008313.1 mouse_genomes_project 2 31469371 31469424 - Gm25998 miRNA miRNA MGP_CASTEiJ_T0007155.1 MGP_CASTEiJ_G0005882.1 mouse_genomes_project 2 140694755 140701570 - Gm14062 lincRNA lincRNA MGP_CASTEiJ_T0053903.1 MGP_CASTEiJ_G0024795.1 mouse_genomes_project 2 30249888 30269039 + MGP_CASTEiJ_P0053903 Pomt1 protein_coding protein_coding MGP_CASTEiJ_T0053904.1 MGP_CASTEiJ_G0024795.1 mouse_genomes_project 2 30249941 30250982 + Pomt1 protein_coding retained_intron MGP_CASTEiJ_T0053905.1 MGP_CASTEiJ_G0024795.1 mouse_genomes_project 2 30249970 30257088 + Pomt1 protein_coding retained_intron MGP_CASTEiJ_T0053906.1 MGP_CASTEiJ_G0024795.1 mouse_genomes_project 2 30249983 30269039 + Pomt1 protein_coding retained_intron MGP_CASTEiJ_T0053907.1 MGP_CASTEiJ_G0024795.1 mouse_genomes_project 2 30250335 30256713 + MGP_CASTEiJ_P0053907 Pomt1 protein_coding protein_coding MGP_CASTEiJ_T0053908.1 MGP_CASTEiJ_G0024795.1 mouse_genomes_project 2 30250637 30256803 + MGP_CASTEiJ_P0053908 Pomt1 protein_coding protein_coding MGP_CASTEiJ_T0053909.1 MGP_CASTEiJ_G0024795.1 mouse_genomes_project 2 30257617 30264176 + MGP_CASTEiJ_P0053909 Pomt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053910.1 MGP_CASTEiJ_G0024795.1 mouse_genomes_project 2 30258548 30261958 + Pomt1 protein_coding retained_intron MGP_CASTEiJ_T0053911.1 MGP_CASTEiJ_G0024795.1 mouse_genomes_project 2 30260839 30265038 + Pomt1 protein_coding retained_intron MGP_CASTEiJ_T0053912.1 MGP_CASTEiJ_G0024795.1 mouse_genomes_project 2 30261929 30267832 + MGP_CASTEiJ_P0053912 Pomt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053913.1 MGP_CASTEiJ_G0024795.1 mouse_genomes_project 2 30264539 30265959 + Pomt1 protein_coding retained_intron MGP_CASTEiJ_T0011170.1 MGP_CASTEiJ_G0009358.1 mouse_genomes_project 2 48654506 48654616 - Gm25223 misc_RNA misc_RNA MGP_CASTEiJ_T0003848.1 MGP_CASTEiJ_G0003443.1 mouse_genomes_project 2 57114939 57127960 + Gm13546 antisense antisense MGP_CASTEiJ_T0003849.1 MGP_CASTEiJ_G0003443.1 mouse_genomes_project 2 57120636 57127234 + Gm13546 antisense antisense MGP_CASTEiJ_T0003963.1 MGP_CASTEiJ_G0003521.1 mouse_genomes_project 2 134173753 134270561 - Gm14280 antisense antisense MGP_CASTEiJ_T0010193.1 MGP_CASTEiJ_G0008381.1 mouse_genomes_project 2 162941369 162941462 + Gm44319 miRNA miRNA MGP_CASTEiJ_T0058243.1 MGP_CASTEiJ_G0025852.1 mouse_genomes_project 2 155953592 155963879 + MGP_CASTEiJ_P0058243 Rem1 protein_coding protein_coding MGP_CASTEiJ_T0058244.1 MGP_CASTEiJ_G0025852.1 mouse_genomes_project 2 155953594 155956140 + MGP_CASTEiJ_P0058244 Rem1 protein_coding protein_coding MGP_CASTEiJ_T0058245.1 MGP_CASTEiJ_G0025852.1 mouse_genomes_project 2 155960769 155963883 + Rem1 protein_coding retained_intron MGP_CASTEiJ_T0058845.1 MGP_CASTEiJ_G0025972.1 mouse_genomes_project 2 162209136 162219502 + MGP_CASTEiJ_P0058845 Snhg11 protein_coding protein_coding MGP_CASTEiJ_T0058846.1 MGP_CASTEiJ_G0025972.1 mouse_genomes_project 2 162209159 162210705 + Snhg11 protein_coding retained_intron MGP_CASTEiJ_T0058847.1 MGP_CASTEiJ_G0025972.1 mouse_genomes_project 2 162209196 162215107 + MGP_CASTEiJ_P0058847 Snhg11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058848.1 MGP_CASTEiJ_G0025972.1 mouse_genomes_project 2 162209213 162212572 + Snhg11 protein_coding retained_intron MGP_CASTEiJ_T0058849.1 MGP_CASTEiJ_G0025972.1 mouse_genomes_project 2 162209223 162214582 + MGP_CASTEiJ_P0058849 Snhg11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053918.1 MGP_CASTEiJ_G0024797.1 mouse_genomes_project 2 30298698 30307951 - MGP_CASTEiJ_P0053918 Swi5 protein_coding protein_coding MGP_CASTEiJ_T0053919.1 MGP_CASTEiJ_G0024797.1 mouse_genomes_project 2 30298698 30302747 - MGP_CASTEiJ_P0053919 Swi5 protein_coding protein_coding MGP_CASTEiJ_T0053920.1 MGP_CASTEiJ_G0024797.1 mouse_genomes_project 2 30298698 30307818 - MGP_CASTEiJ_P0053920 Swi5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053921.1 MGP_CASTEiJ_G0024797.1 mouse_genomes_project 2 30298698 30307888 - MGP_CASTEiJ_P0053921 Swi5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053922.1 MGP_CASTEiJ_G0024797.1 mouse_genomes_project 2 30298698 30307958 - MGP_CASTEiJ_P0053922 Swi5 protein_coding protein_coding MGP_CASTEiJ_T0053923.1 MGP_CASTEiJ_G0024797.1 mouse_genomes_project 2 30298800 30307952 - MGP_CASTEiJ_P0053923 Swi5 protein_coding protein_coding MGP_CASTEiJ_T0053924.1 MGP_CASTEiJ_G0024797.1 mouse_genomes_project 2 30303163 30307914 - Swi5 protein_coding retained_intron MGP_CASTEiJ_T0056686.1 MGP_CASTEiJ_G0025498.1 mouse_genomes_project 2 120324688 120349088 - MGP_CASTEiJ_P0056686 Bmf protein_coding protein_coding MGP_CASTEiJ_T0056687.1 MGP_CASTEiJ_G0025498.1 mouse_genomes_project 2 120326163 120346956 - MGP_CASTEiJ_P0056687 Bmf protein_coding protein_coding MGP_CASTEiJ_T0056688.1 MGP_CASTEiJ_G0025498.1 mouse_genomes_project 2 120327901 120343998 - Bmf protein_coding processed_transcript MGP_CASTEiJ_T0056689.1 MGP_CASTEiJ_G0025498.1 mouse_genomes_project 2 120327982 120344719 - Bmf protein_coding processed_transcript MGP_CASTEiJ_T0056690.1 MGP_CASTEiJ_G0025498.1 mouse_genomes_project 2 120328349 120349063 - Bmf protein_coding processed_transcript MGP_CASTEiJ_T0056691.1 MGP_CASTEiJ_G0025498.1 mouse_genomes_project 2 120344586 120346430 - Bmf protein_coding processed_transcript MGP_CASTEiJ_T0056692.1 MGP_CASTEiJ_G0025498.1 mouse_genomes_project 2 120344638 120346996 - Bmf protein_coding processed_transcript MGP_CASTEiJ_T0056693.1 MGP_CASTEiJ_G0025498.1 mouse_genomes_project 2 120346311 120349076 - Bmf protein_coding processed_transcript MGP_CASTEiJ_T0058937.1 MGP_CASTEiJ_G0025990.1 mouse_genomes_project 2 165504162 166659473 - MGP_CASTEiJ_P0058937 Ptprt protein_coding protein_coding MGP_CASTEiJ_T0058938.1 MGP_CASTEiJ_G0025990.1 mouse_genomes_project 2 165504162 166659473 - MGP_CASTEiJ_P0058938 Ptprt protein_coding protein_coding MGP_CASTEiJ_T0058939.1 MGP_CASTEiJ_G0025990.1 mouse_genomes_project 2 165508506 166659420 - MGP_CASTEiJ_P0058939 Ptprt protein_coding protein_coding MGP_CASTEiJ_T0058940.1 MGP_CASTEiJ_G0025990.1 mouse_genomes_project 2 165509670 166659473 - MGP_CASTEiJ_P0058940 Ptprt protein_coding protein_coding MGP_CASTEiJ_T0058941.1 MGP_CASTEiJ_G0025990.1 mouse_genomes_project 2 165682637 165787232 - Ptprt protein_coding processed_transcript MGP_CASTEiJ_T0058942.1 MGP_CASTEiJ_G0025990.1 mouse_genomes_project 2 166009048 166140782 - Ptprt protein_coding processed_transcript MGP_CASTEiJ_T0013208.1 MGP_CASTEiJ_G0011371.1 mouse_genomes_project 2 81026783 81027911 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059640.1 MGP_CASTEiJ_G0026164.1 mouse_genomes_project 2 182966038 182969308 - Lama5 protein_coding processed_transcript MGP_CASTEiJ_T0059641.1 MGP_CASTEiJ_G0026164.1 mouse_genomes_project 2 182966038 183016438 - MGP_CASTEiJ_P0059641 Lama5 protein_coding protein_coding MGP_CASTEiJ_T0059642.1 MGP_CASTEiJ_G0026164.1 mouse_genomes_project 2 182966118 182967252 - Lama5 protein_coding processed_transcript MGP_CASTEiJ_T0059643.1 MGP_CASTEiJ_G0026164.1 mouse_genomes_project 2 182966832 182968068 - Lama5 protein_coding processed_transcript MGP_CASTEiJ_T0099647.1 MGP_CASTEiJ_G0036560.1 mouse_genomes_project 2 92070543 92070649 + Gm23390 snRNA snRNA MGP_CASTEiJ_T0055820.1 MGP_CASTEiJ_G0025297.1 mouse_genomes_project 2 90635058 90635757 + MGP_CASTEiJ_P0055820 Olfr1255 protein_coding protein_coding MGP_CASTEiJ_T0010197.1 MGP_CASTEiJ_G0008385.1 mouse_genomes_project 2 172054013 172054109 - Gm22355 miRNA miRNA MGP_CASTEiJ_T0011157.1 MGP_CASTEiJ_G0009345.1 mouse_genomes_project 2 5610581 5610872 - Gm24534 misc_RNA misc_RNA MGP_CASTEiJ_T0017149.1 MGP_CASTEiJ_G0014798.1 mouse_genomes_project 2 161923541 161924285 + Gm20412 processed_transcript processed_transcript MGP_CASTEiJ_T0056275.1 MGP_CASTEiJ_G0025381.1 mouse_genomes_project 2 103427527 103532768 - MGP_CASTEiJ_P0056275 Trim44 protein_coding protein_coding MGP_CASTEiJ_T0056276.1 MGP_CASTEiJ_G0025381.1 mouse_genomes_project 2 103431886 103532126 - MGP_CASTEiJ_P0056276 Trim44 protein_coding protein_coding MGP_CASTEiJ_T0056277.1 MGP_CASTEiJ_G0025381.1 mouse_genomes_project 2 103487620 103539509 - MGP_CASTEiJ_P0056277 Trim44 protein_coding protein_coding MGP_CASTEiJ_T0007074.1 MGP_CASTEiJ_G0005818.1 mouse_genomes_project 2 93472545 93518474 + Gm13814 lincRNA lincRNA MGP_CASTEiJ_T0017094.1 MGP_CASTEiJ_G0014771.1 mouse_genomes_project 2 116235758 116279684 + Gm13972 processed_transcript processed_transcript MGP_CASTEiJ_T0013242.1 MGP_CASTEiJ_G0011405.1 mouse_genomes_project 2 90019945 90020752 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055671.1 MGP_CASTEiJ_G0025172.1 mouse_genomes_project 2 87318648 87319641 + MGP_CASTEiJ_P0055671 Olfr1094 protein_coding protein_coding MGP_CASTEiJ_T0053383.1 MGP_CASTEiJ_G0024715.1 mouse_genomes_project 2 25771440 25779938 - MGP_CASTEiJ_P0053383 Fcnb protein_coding protein_coding MGP_CASTEiJ_T0053384.1 MGP_CASTEiJ_G0024715.1 mouse_genomes_project 2 25773154 25779938 - MGP_CASTEiJ_P0053384 Fcnb protein_coding protein_coding MGP_CASTEiJ_T0053385.1 MGP_CASTEiJ_G0024715.1 mouse_genomes_project 2 25774794 25779938 - MGP_CASTEiJ_P0053385 Fcnb protein_coding protein_coding MGP_CASTEiJ_T0054728.1 MGP_CASTEiJ_G0024949.1 mouse_genomes_project 2 57800397 58080911 - MGP_CASTEiJ_P0054728 Ccdc148 protein_coding protein_coding MGP_CASTEiJ_T0054729.1 MGP_CASTEiJ_G0024949.1 mouse_genomes_project 2 57802133 57885829 - Ccdc148 protein_coding processed_transcript MGP_CASTEiJ_T0054730.1 MGP_CASTEiJ_G0024949.1 mouse_genomes_project 2 57802257 57984465 - MGP_CASTEiJ_P0054730 Ccdc148 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054731.1 MGP_CASTEiJ_G0024949.1 mouse_genomes_project 2 58079053 58080762 - Ccdc148 protein_coding processed_transcript MGP_CASTEiJ_T0057507.1 MGP_CASTEiJ_G0025669.1 mouse_genomes_project 2 131852473 131922789 - MGP_CASTEiJ_P0057507 F830045P16Rik protein_coding protein_coding MGP_CASTEiJ_T0055625.1 MGP_CASTEiJ_G0025128.1 mouse_genomes_project 2 86141694 86145370 + MGP_CASTEiJ_P0055625 Olfr1013 protein_coding protein_coding MGP_CASTEiJ_T0056781.1 MGP_CASTEiJ_G0025519.1 mouse_genomes_project 2 121046251 121059551 - MGP_CASTEiJ_P0056781 Ppp1r14d protein_coding protein_coding MGP_CASTEiJ_T0056782.1 MGP_CASTEiJ_G0025519.1 mouse_genomes_project 2 121046272 121059510 - MGP_CASTEiJ_P0056782 Ppp1r14d protein_coding protein_coding MGP_CASTEiJ_T0013125.1 MGP_CASTEiJ_G0011288.1 mouse_genomes_project 2 49293897 49294076 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052766.1 MGP_CASTEiJ_G0024606.1 mouse_genomes_project 2 21815049 21844771 + MGP_CASTEiJ_P0052766 Psd4 protein_coding protein_coding MGP_CASTEiJ_T0052767.1 MGP_CASTEiJ_G0024606.1 mouse_genomes_project 2 21815079 21865478 + MGP_CASTEiJ_P0052767 Psd4 protein_coding protein_coding MGP_CASTEiJ_T0052768.1 MGP_CASTEiJ_G0024606.1 mouse_genomes_project 2 21833644 21859221 + MGP_CASTEiJ_P0052768 Psd4 protein_coding protein_coding MGP_CASTEiJ_T0052769.1 MGP_CASTEiJ_G0024606.1 mouse_genomes_project 2 21833647 21844924 + MGP_CASTEiJ_P0052769 Psd4 protein_coding protein_coding MGP_CASTEiJ_T0052770.1 MGP_CASTEiJ_G0024606.1 mouse_genomes_project 2 21833648 21847853 + Psd4 protein_coding processed_transcript MGP_CASTEiJ_T0052771.1 MGP_CASTEiJ_G0024606.1 mouse_genomes_project 2 21833665 21844818 + MGP_CASTEiJ_P0052771 Psd4 protein_coding protein_coding MGP_CASTEiJ_T0052772.1 MGP_CASTEiJ_G0024606.1 mouse_genomes_project 2 21836779 21845104 + MGP_CASTEiJ_P0052772 Psd4 protein_coding protein_coding MGP_CASTEiJ_T0052773.1 MGP_CASTEiJ_G0024606.1 mouse_genomes_project 2 21836827 21858692 + MGP_CASTEiJ_P0052773 Psd4 protein_coding protein_coding MGP_CASTEiJ_T0052774.1 MGP_CASTEiJ_G0024606.1 mouse_genomes_project 2 21851530 21853747 + MGP_CASTEiJ_P0052774 Psd4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052775.1 MGP_CASTEiJ_G0024606.1 mouse_genomes_project 2 21856125 21857503 + Psd4 protein_coding retained_intron MGP_CASTEiJ_T0058471.1 MGP_CASTEiJ_G0025912.1 mouse_genomes_project 2 158958653 158965802 + MGP_CASTEiJ_P0058471 Trp53inp2 protein_coding protein_coding MGP_CASTEiJ_T0058472.1 MGP_CASTEiJ_G0025912.1 mouse_genomes_project 2 158959858 158969595 + MGP_CASTEiJ_P0058472 Trp53inp2 protein_coding protein_coding MGP_CASTEiJ_T0058473.1 MGP_CASTEiJ_G0025912.1 mouse_genomes_project 2 158959884 158966501 + MGP_CASTEiJ_P0058473 Trp53inp2 protein_coding protein_coding MGP_CASTEiJ_T0058474.1 MGP_CASTEiJ_G0025912.1 mouse_genomes_project 2 158959904 158965701 + Trp53inp2 protein_coding retained_intron MGP_CASTEiJ_T0058475.1 MGP_CASTEiJ_G0025912.1 mouse_genomes_project 2 158960246 158965713 + MGP_CASTEiJ_P0058475 Trp53inp2 protein_coding protein_coding MGP_CASTEiJ_T0059099.1 MGP_CASTEiJ_G0026043.1 mouse_genomes_project 2 168865282 168869277 + MGP_CASTEiJ_P0059099 Spint4 protein_coding protein_coding MGP_CASTEiJ_T0059224.1 MGP_CASTEiJ_G0026067.1 mouse_genomes_project 2 169570599 169588947 - MGP_CASTEiJ_P0059224 Zfp663 protein_coding protein_coding MGP_CASTEiJ_T0059225.1 MGP_CASTEiJ_G0026067.1 mouse_genomes_project 2 169570600 169580443 - MGP_CASTEiJ_P0059225 Zfp663 protein_coding protein_coding MGP_CASTEiJ_T0059226.1 MGP_CASTEiJ_G0026067.1 mouse_genomes_project 2 169573112 169579724 - Zfp663 protein_coding processed_transcript MGP_CASTEiJ_T0059227.1 MGP_CASTEiJ_G0026067.1 mouse_genomes_project 2 169573345 169588941 - MGP_CASTEiJ_P0059227 Zfp663 protein_coding protein_coding MGP_CASTEiJ_T0056555.1 MGP_CASTEiJ_G0025457.1 mouse_genomes_project 2 113352648 113355836 + MGP_CASTEiJ_P0056555 Olfr1303 protein_coding protein_coding MGP_CASTEiJ_T0010168.1 MGP_CASTEiJ_G0008356.1 mouse_genomes_project 2 123423399 123423500 - Gm22953 miRNA miRNA MGP_CASTEiJ_T0013113.1 MGP_CASTEiJ_G0011276.1 mouse_genomes_project 2 43907455 43907689 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003805.1 MGP_CASTEiJ_G0003407.1 mouse_genomes_project 2 24266891 24270254 + antisense antisense MGP_CASTEiJ_T0013450.1 MGP_CASTEiJ_G0011613.1 mouse_genomes_project 2 179096301 179096963 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055574.1 MGP_CASTEiJ_G0025106.1 mouse_genomes_project 2 85159114 85177475 - MGP_CASTEiJ_P0055574 Rtn4rl2 protein_coding protein_coding MGP_CASTEiJ_T0055575.1 MGP_CASTEiJ_G0025106.1 mouse_genomes_project 2 85159136 85177457 - MGP_CASTEiJ_P0055575 Rtn4rl2 protein_coding protein_coding MGP_CASTEiJ_T0055576.1 MGP_CASTEiJ_G0025106.1 mouse_genomes_project 2 85167723 85177241 - Rtn4rl2 protein_coding processed_transcript MGP_CASTEiJ_T0059454.1 MGP_CASTEiJ_G0026111.1 mouse_genomes_project 2 175202846 175219902 - MGP_CASTEiJ_P0059454 Cyp24a1 protein_coding protein_coding MGP_CASTEiJ_T0003866.1 MGP_CASTEiJ_G0003457.1 mouse_genomes_project 2 66813804 66840821 - Gm13601 antisense antisense MGP_CASTEiJ_T0001033.1 MGP_CASTEiJ_G0000969.1 mouse_genomes_project 2 37496897 37500376 - TEC TEC MGP_CASTEiJ_T0006946.1 MGP_CASTEiJ_G0005715.1 mouse_genomes_project 2 4681278 4682636 + Gm28641 lincRNA lincRNA MGP_CASTEiJ_T0059768.1 MGP_CASTEiJ_G0026192.1 mouse_genomes_project 2 184110994 184151908 - MGP_CASTEiJ_P0059768 Gmeb2 protein_coding protein_coding MGP_CASTEiJ_T0059769.1 MGP_CASTEiJ_G0026192.1 mouse_genomes_project 2 184113330 184138806 - MGP_CASTEiJ_P0059769 Gmeb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059770.1 MGP_CASTEiJ_G0026192.1 mouse_genomes_project 2 184114324 184115681 - Gmeb2 protein_coding retained_intron MGP_CASTEiJ_T0059771.1 MGP_CASTEiJ_G0026192.1 mouse_genomes_project 2 184115467 184150661 - MGP_CASTEiJ_P0059771 Gmeb2 protein_coding protein_coding MGP_CASTEiJ_T0059772.1 MGP_CASTEiJ_G0026192.1 mouse_genomes_project 2 184115487 184151889 - MGP_CASTEiJ_P0059772 Gmeb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059773.1 MGP_CASTEiJ_G0026192.1 mouse_genomes_project 2 184125113 184151904 - Gmeb2 protein_coding retained_intron MGP_CASTEiJ_T0007094.1 MGP_CASTEiJ_G0005832.1 mouse_genomes_project 2 104565270 104578460 - BC016548 lincRNA lincRNA MGP_CASTEiJ_T0007095.1 MGP_CASTEiJ_G0005832.1 mouse_genomes_project 2 104573410 104578458 - BC016548 lincRNA lincRNA MGP_CASTEiJ_T0057384.1 MGP_CASTEiJ_G0025635.1 mouse_genomes_project 2 129557280 129571589 + Stard7 protein_coding processed_transcript MGP_CASTEiJ_T0057385.1 MGP_CASTEiJ_G0025635.1 mouse_genomes_project 2 129557644 129585696 + MGP_CASTEiJ_P0057385 Stard7 protein_coding protein_coding MGP_CASTEiJ_T0057386.1 MGP_CASTEiJ_G0025635.1 mouse_genomes_project 2 129557766 129585689 + MGP_CASTEiJ_P0057386 Stard7 protein_coding protein_coding MGP_CASTEiJ_T0057387.1 MGP_CASTEiJ_G0025635.1 mouse_genomes_project 2 129571239 129582583 + Stard7 protein_coding retained_intron MGP_CASTEiJ_T0057388.1 MGP_CASTEiJ_G0025635.1 mouse_genomes_project 2 129577027 129584069 + Stard7 protein_coding retained_intron MGP_CASTEiJ_T0057389.1 MGP_CASTEiJ_G0025635.1 mouse_genomes_project 2 129579040 129584094 + Stard7 protein_coding processed_transcript MGP_CASTEiJ_T0057390.1 MGP_CASTEiJ_G0025635.1 mouse_genomes_project 2 129579042 129584123 + Stard7 protein_coding processed_transcript MGP_CASTEiJ_T0013151.1 MGP_CASTEiJ_G0011314.1 mouse_genomes_project 2 57922967 57923666 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055456.1 MGP_CASTEiJ_G0025079.1 mouse_genomes_project 2 80671824 80758230 - MGP_CASTEiJ_P0055456 Nckap1 protein_coding protein_coding MGP_CASTEiJ_T0055457.1 MGP_CASTEiJ_G0025079.1 mouse_genomes_project 2 80671830 80758346 - MGP_CASTEiJ_P0055457 Nckap1 protein_coding protein_coding MGP_CASTEiJ_T0055458.1 MGP_CASTEiJ_G0025079.1 mouse_genomes_project 2 80678762 80700833 - Nckap1 protein_coding processed_transcript MGP_CASTEiJ_T0055459.1 MGP_CASTEiJ_G0025079.1 mouse_genomes_project 2 80720375 80731290 - Nckap1 protein_coding processed_transcript MGP_CASTEiJ_T0055460.1 MGP_CASTEiJ_G0025079.1 mouse_genomes_project 2 80725152 80731010 - Nckap1 protein_coding processed_transcript MGP_CASTEiJ_T0003831.1 MGP_CASTEiJ_G0003430.1 mouse_genomes_project 2 31942093 31949879 + Nron antisense antisense MGP_CASTEiJ_T0003832.1 MGP_CASTEiJ_G0003430.1 mouse_genomes_project 2 31942105 31948743 + Nron antisense antisense MGP_CASTEiJ_T0003833.1 MGP_CASTEiJ_G0003430.1 mouse_genomes_project 2 31942136 31947726 + Nron antisense antisense MGP_CASTEiJ_T0052730.1 MGP_CASTEiJ_G0024594.1 mouse_genomes_project 2 20606250 20652259 + MGP_CASTEiJ_P0052730 Yme1l1 protein_coding protein_coding MGP_CASTEiJ_T0052731.1 MGP_CASTEiJ_G0024594.1 mouse_genomes_project 2 20606399 20627494 + Yme1l1 protein_coding processed_transcript MGP_CASTEiJ_T0052732.1 MGP_CASTEiJ_G0024594.1 mouse_genomes_project 2 20606409 20610541 + Yme1l1 protein_coding processed_transcript MGP_CASTEiJ_T0052733.1 MGP_CASTEiJ_G0024594.1 mouse_genomes_project 2 20606714 20614964 + Yme1l1 protein_coding processed_transcript MGP_CASTEiJ_T0052734.1 MGP_CASTEiJ_G0024594.1 mouse_genomes_project 2 20618804 20624028 + Yme1l1 protein_coding processed_transcript MGP_CASTEiJ_T0052735.1 MGP_CASTEiJ_G0024594.1 mouse_genomes_project 2 20646294 20648536 + Yme1l1 protein_coding processed_transcript MGP_CASTEiJ_T0059441.1 MGP_CASTEiJ_G0026109.1 mouse_genomes_project 2 174769554 174794487 - MGP_CASTEiJ_P0059441 Zfp217 protein_coding protein_coding MGP_CASTEiJ_T0059442.1 MGP_CASTEiJ_G0026109.1 mouse_genomes_project 2 174769557 174808646 - MGP_CASTEiJ_P0059442 Zfp217 protein_coding protein_coding MGP_CASTEiJ_T0059443.1 MGP_CASTEiJ_G0026109.1 mouse_genomes_project 2 174782286 174794487 - Zfp217 protein_coding processed_transcript MGP_CASTEiJ_T0059444.1 MGP_CASTEiJ_G0026109.1 mouse_genomes_project 2 174782572 174797229 - Zfp217 protein_coding processed_transcript MGP_CASTEiJ_T0059445.1 MGP_CASTEiJ_G0026109.1 mouse_genomes_project 2 174782672 174814125 - Zfp217 protein_coding processed_transcript MGP_CASTEiJ_T0013294.1 MGP_CASTEiJ_G0011457.1 mouse_genomes_project 2 110153308 110154299 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058075.1 MGP_CASTEiJ_G0025794.1 mouse_genomes_project 2 152033979 152037819 + MGP_CASTEiJ_P0058075 8030411F24Rik protein_coding protein_coding MGP_CASTEiJ_T0013371.1 MGP_CASTEiJ_G0011534.1 mouse_genomes_project 2 146886578 146886910 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003864.1 MGP_CASTEiJ_G0003455.1 mouse_genomes_project 2 65702148 65824243 + Gm13629 antisense antisense MGP_CASTEiJ_T0057538.1 MGP_CASTEiJ_G0025677.1 mouse_genomes_project 2 132698219 132704065 + MGP_CASTEiJ_P0057538 Nop56 protein_coding protein_coding MGP_CASTEiJ_T0057539.1 MGP_CASTEiJ_G0025677.1 mouse_genomes_project 2 132698233 132704064 + Nop56 protein_coding retained_intron MGP_CASTEiJ_T0057540.1 MGP_CASTEiJ_G0025677.1 mouse_genomes_project 2 132698235 132702762 + Nop56 protein_coding retained_intron MGP_CASTEiJ_T0057541.1 MGP_CASTEiJ_G0025677.1 mouse_genomes_project 2 132698238 132704006 + MGP_CASTEiJ_P0057541 Nop56 protein_coding protein_coding MGP_CASTEiJ_T0057542.1 MGP_CASTEiJ_G0025677.1 mouse_genomes_project 2 132698244 132701319 + MGP_CASTEiJ_P0057542 Nop56 protein_coding protein_coding MGP_CASTEiJ_T0057543.1 MGP_CASTEiJ_G0025677.1 mouse_genomes_project 2 132698281 132699877 + MGP_CASTEiJ_P0057543 Nop56 protein_coding protein_coding MGP_CASTEiJ_T0057544.1 MGP_CASTEiJ_G0025677.1 mouse_genomes_project 2 132698620 132699474 + Nop56 protein_coding retained_intron MGP_CASTEiJ_T0057545.1 MGP_CASTEiJ_G0025677.1 mouse_genomes_project 2 132699573 132700045 + Nop56 protein_coding retained_intron MGP_CASTEiJ_T0057546.1 MGP_CASTEiJ_G0025677.1 mouse_genomes_project 2 132699937 132702742 + MGP_CASTEiJ_P0057546 Nop56 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057547.1 MGP_CASTEiJ_G0025677.1 mouse_genomes_project 2 132700078 132701352 + Nop56 protein_coding retained_intron MGP_CASTEiJ_T0057548.1 MGP_CASTEiJ_G0025677.1 mouse_genomes_project 2 132700251 132701736 + Nop56 protein_coding retained_intron MGP_CASTEiJ_T0057549.1 MGP_CASTEiJ_G0025677.1 mouse_genomes_project 2 132700373 132701740 + MGP_CASTEiJ_P0057549 Nop56 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057550.1 MGP_CASTEiJ_G0025677.1 mouse_genomes_project 2 132700441 132701062 + Nop56 protein_coding retained_intron MGP_CASTEiJ_T0057551.1 MGP_CASTEiJ_G0025677.1 mouse_genomes_project 2 132700868 132704059 + Nop56 protein_coding retained_intron MGP_CASTEiJ_T0057552.1 MGP_CASTEiJ_G0025677.1 mouse_genomes_project 2 132701491 132704032 + Nop56 protein_coding retained_intron MGP_CASTEiJ_T0055461.1 MGP_CASTEiJ_G0025080.1 mouse_genomes_project 2 80795798 80813376 + MGP_CASTEiJ_P0055461 Dusp19 protein_coding protein_coding MGP_CASTEiJ_T0055462.1 MGP_CASTEiJ_G0025080.1 mouse_genomes_project 2 80795853 80813443 + Dusp19 protein_coding processed_transcript MGP_CASTEiJ_T0055463.1 MGP_CASTEiJ_G0025080.1 mouse_genomes_project 2 80795979 80812539 + Dusp19 protein_coding processed_transcript MGP_CASTEiJ_T0055464.1 MGP_CASTEiJ_G0025080.1 mouse_genomes_project 2 80795984 80803073 + Dusp19 protein_coding processed_transcript MGP_CASTEiJ_T0055466.1 MGP_CASTEiJ_G0025080.1 mouse_genomes_project 2 80796019 80814074 + Dusp19 protein_coding processed_transcript MGP_CASTEiJ_T0010084.1 MGP_CASTEiJ_G0008272.1 mouse_genomes_project 2 7752912 7752993 + Mir466h miRNA miRNA MGP_CASTEiJ_T0007033.1 MGP_CASTEiJ_G0005784.1 mouse_genomes_project 2 71365105 71377679 + Platr26 lincRNA lincRNA MGP_CASTEiJ_T0055333.1 MGP_CASTEiJ_G0025062.1 mouse_genomes_project 2 76604169 76614272 - MGP_CASTEiJ_P0055333 Fkbp7 protein_coding protein_coding MGP_CASTEiJ_T0055334.1 MGP_CASTEiJ_G0025062.1 mouse_genomes_project 2 76604188 76606366 - Fkbp7 protein_coding processed_transcript MGP_CASTEiJ_T0055335.1 MGP_CASTEiJ_G0025062.1 mouse_genomes_project 2 76606828 76614318 - MGP_CASTEiJ_P0055335 Fkbp7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055336.1 MGP_CASTEiJ_G0025062.1 mouse_genomes_project 2 76612567 76614287 - Fkbp7 protein_coding retained_intron MGP_CASTEiJ_T0055742.1 MGP_CASTEiJ_G0025232.1 mouse_genomes_project 2 88700743 88814452 - MGP_CASTEiJ_P0055742 protein_coding protein_coding MGP_CASTEiJ_T0052145.1 MGP_CASTEiJ_G0024498.1 mouse_genomes_project 2 60290 180882 + MGP_CASTEiJ_P0052145 Fam171a1 protein_coding protein_coding MGP_CASTEiJ_T0052146.1 MGP_CASTEiJ_G0024498.1 mouse_genomes_project 2 60395 180200 + MGP_CASTEiJ_P0052146 Fam171a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052147.1 MGP_CASTEiJ_G0024498.1 mouse_genomes_project 2 60433 181439 + MGP_CASTEiJ_P0052147 Fam171a1 protein_coding protein_coding MGP_CASTEiJ_T0052148.1 MGP_CASTEiJ_G0024498.1 mouse_genomes_project 2 60562 181436 + MGP_CASTEiJ_P0052148 Fam171a1 protein_coding protein_coding MGP_CASTEiJ_T0003942.1 MGP_CASTEiJ_G0003505.1 mouse_genomes_project 2 121915020 121917628 - Gm13999 antisense antisense MGP_CASTEiJ_T0100915.1 MGP_CASTEiJ_G0037828.1 mouse_genomes_project 2 151873909 151874021 + Gm25866 snoRNA snoRNA MGP_CASTEiJ_T0053069.1 MGP_CASTEiJ_G0024653.1 mouse_genomes_project 2 23127903 23129917 - MGP_CASTEiJ_P0053069 Phpt1 protein_coding protein_coding MGP_CASTEiJ_T0053070.1 MGP_CASTEiJ_G0024653.1 mouse_genomes_project 2 23127975 23129571 - Phpt1 protein_coding processed_transcript MGP_CASTEiJ_T0007244.1 MGP_CASTEiJ_G0005956.1 mouse_genomes_project 2 178396708 178397865 + Gm14642 lincRNA lincRNA MGP_CASTEiJ_T0007189.1 MGP_CASTEiJ_G0005908.1 mouse_genomes_project 2 162192734 162192866 - Gm23925 lincRNA lincRNA MGP_CASTEiJ_T0054324.1 MGP_CASTEiJ_G0024854.1 mouse_genomes_project 2 34295968 34309025 - MGP_CASTEiJ_P0054324 Ndufa8 protein_coding protein_coding MGP_CASTEiJ_T0055719.1 MGP_CASTEiJ_G0025211.1 mouse_genomes_project 2 88284985 88285921 + MGP_CASTEiJ_P0055719 Olfr1140 protein_coding protein_coding MGP_CASTEiJ_T0056561.1 MGP_CASTEiJ_G0025463.1 mouse_genomes_project 2 113529679 113530633 - MGP_CASTEiJ_P0056561 Olfr1312 protein_coding protein_coding MGP_CASTEiJ_T0057665.1 MGP_CASTEiJ_G0025703.1 mouse_genomes_project 2 133643460 133657164 - MGP_CASTEiJ_P0057665 1700037H04Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057666.1 MGP_CASTEiJ_G0025703.1 mouse_genomes_project 2 133643461 133646165 - 1700037H04Rik protein_coding retained_intron MGP_CASTEiJ_T0057667.1 MGP_CASTEiJ_G0025703.1 mouse_genomes_project 2 133643461 133657150 - MGP_CASTEiJ_P0057667 1700037H04Rik protein_coding protein_coding MGP_CASTEiJ_T0057668.1 MGP_CASTEiJ_G0025703.1 mouse_genomes_project 2 133643930 133657154 - MGP_CASTEiJ_P0057668 1700037H04Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057669.1 MGP_CASTEiJ_G0025703.1 mouse_genomes_project 2 133643940 133657211 - MGP_CASTEiJ_P0057669 1700037H04Rik protein_coding protein_coding MGP_CASTEiJ_T0057670.1 MGP_CASTEiJ_G0025703.1 mouse_genomes_project 2 133644297 133657172 - MGP_CASTEiJ_P0057670 1700037H04Rik protein_coding protein_coding MGP_CASTEiJ_T0057671.1 MGP_CASTEiJ_G0025703.1 mouse_genomes_project 2 133645417 133657172 - 1700037H04Rik protein_coding processed_transcript MGP_CASTEiJ_T0057745.1 MGP_CASTEiJ_G0025719.1 mouse_genomes_project 2 134805390 134815189 - MGP_CASTEiJ_P0057745 Tmem230 protein_coding protein_coding MGP_CASTEiJ_T0057746.1 MGP_CASTEiJ_G0025719.1 mouse_genomes_project 2 134805390 134815151 - MGP_CASTEiJ_P0057746 Tmem230 protein_coding protein_coding MGP_CASTEiJ_T0057747.1 MGP_CASTEiJ_G0025719.1 mouse_genomes_project 2 134805392 134815170 - MGP_CASTEiJ_P0057747 Tmem230 protein_coding protein_coding MGP_CASTEiJ_T0057748.1 MGP_CASTEiJ_G0025719.1 mouse_genomes_project 2 134812697 134815141 - Tmem230 protein_coding processed_transcript MGP_CASTEiJ_T0057749.1 MGP_CASTEiJ_G0025719.1 mouse_genomes_project 2 134813229 134815138 - Tmem230 protein_coding retained_intron MGP_CASTEiJ_T0013397.1 MGP_CASTEiJ_G0011560.1 mouse_genomes_project 2 154965994 154966446 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055816.1 MGP_CASTEiJ_G0025294.1 mouse_genomes_project 2 90549698 90550643 - MGP_CASTEiJ_P0055816 protein_coding protein_coding MGP_CASTEiJ_T0013171.1 MGP_CASTEiJ_G0011334.1 mouse_genomes_project 2 67105993 67106076 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003909.1 MGP_CASTEiJ_G0003485.1 mouse_genomes_project 2 94456056 94468948 + Gm13807 antisense antisense MGP_CASTEiJ_T0017016.1 MGP_CASTEiJ_G0014726.1 mouse_genomes_project 2 30045154 30061589 - Gm16534 processed_transcript processed_transcript MGP_CASTEiJ_T0017017.1 MGP_CASTEiJ_G0014726.1 mouse_genomes_project 2 30045949 30062373 - Gm16534 processed_transcript processed_transcript MGP_CASTEiJ_T0057891.1 MGP_CASTEiJ_G0025751.1 mouse_genomes_project 2 143290452 145394892 + MGP_CASTEiJ_P0057891 Macrod2 protein_coding protein_coding MGP_CASTEiJ_T0057892.1 MGP_CASTEiJ_G0025751.1 mouse_genomes_project 2 143290499 143610364 + MGP_CASTEiJ_P0057892 Macrod2 protein_coding protein_coding MGP_CASTEiJ_T0057893.1 MGP_CASTEiJ_G0025751.1 mouse_genomes_project 2 143290499 145394892 + MGP_CASTEiJ_P0057893 Macrod2 protein_coding protein_coding MGP_CASTEiJ_T0057894.1 MGP_CASTEiJ_G0025751.1 mouse_genomes_project 2 143290573 143314282 + MGP_CASTEiJ_P0057894 Macrod2 protein_coding protein_coding MGP_CASTEiJ_T0057895.1 MGP_CASTEiJ_G0025751.1 mouse_genomes_project 2 143290576 143730488 + Macrod2 protein_coding retained_intron MGP_CASTEiJ_T0057896.1 MGP_CASTEiJ_G0025751.1 mouse_genomes_project 2 143290578 143314286 + MGP_CASTEiJ_P0057896 Macrod2 protein_coding protein_coding MGP_CASTEiJ_T0057897.1 MGP_CASTEiJ_G0025751.1 mouse_genomes_project 2 143290578 145385816 + MGP_CASTEiJ_P0057897 Macrod2 protein_coding protein_coding MGP_CASTEiJ_T0057898.1 MGP_CASTEiJ_G0025751.1 mouse_genomes_project 2 143290599 143547096 + Macrod2 protein_coding processed_transcript MGP_CASTEiJ_T0057899.1 MGP_CASTEiJ_G0025751.1 mouse_genomes_project 2 143290603 143311819 + Macrod2 protein_coding processed_transcript MGP_CASTEiJ_T0057900.1 MGP_CASTEiJ_G0025751.1 mouse_genomes_project 2 143296036 143311819 + MGP_CASTEiJ_P0057900 Macrod2 protein_coding protein_coding MGP_CASTEiJ_T0057904.1 MGP_CASTEiJ_G0025751.1 mouse_genomes_project 2 143948037 144081947 + Macrod2 protein_coding processed_transcript MGP_CASTEiJ_T0057905.1 MGP_CASTEiJ_G0025751.1 mouse_genomes_project 2 144514040 145394892 + Macrod2 protein_coding processed_transcript MGP_CASTEiJ_T0057906.1 MGP_CASTEiJ_G0025751.1 mouse_genomes_project 2 145181536 145228885 + MGP_CASTEiJ_P0057906 Macrod2 protein_coding protein_coding MGP_CASTEiJ_T0057658.1 MGP_CASTEiJ_G0025700.1 mouse_genomes_project 2 133556774 133578690 - MGP_CASTEiJ_P0057658 Siglec1 protein_coding protein_coding MGP_CASTEiJ_T0057659.1 MGP_CASTEiJ_G0025700.1 mouse_genomes_project 2 133559608 133578690 - MGP_CASTEiJ_P0057659 Siglec1 protein_coding protein_coding MGP_CASTEiJ_T0057660.1 MGP_CASTEiJ_G0025700.1 mouse_genomes_project 2 133575480 133578690 - MGP_CASTEiJ_P0057660 Siglec1 protein_coding protein_coding MGP_CASTEiJ_T0059628.1 MGP_CASTEiJ_G0026162.1 mouse_genomes_project 2 182906687 182952294 + MGP_CASTEiJ_P0059628 Osbpl2 protein_coding protein_coding MGP_CASTEiJ_T0059629.1 MGP_CASTEiJ_G0026162.1 mouse_genomes_project 2 182906716 182926154 + Osbpl2 protein_coding processed_transcript MGP_CASTEiJ_T0059630.1 MGP_CASTEiJ_G0026162.1 mouse_genomes_project 2 182906785 182948907 + Osbpl2 protein_coding retained_intron MGP_CASTEiJ_T0059631.1 MGP_CASTEiJ_G0026162.1 mouse_genomes_project 2 182938409 182940439 + Osbpl2 protein_coding retained_intron MGP_CASTEiJ_T0013221.1 MGP_CASTEiJ_G0011384.1 mouse_genomes_project 2 84936185 84941819 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057231.1 MGP_CASTEiJ_G0025602.1 mouse_genomes_project 2 126267276 126322970 + Sema6d protein_coding retained_intron MGP_CASTEiJ_T0057232.1 MGP_CASTEiJ_G0025602.1 mouse_genomes_project 2 126267276 126857422 + MGP_CASTEiJ_P0057232 Sema6d protein_coding protein_coding MGP_CASTEiJ_T0057233.1 MGP_CASTEiJ_G0025602.1 mouse_genomes_project 2 126322592 126692352 + Sema6d protein_coding processed_transcript MGP_CASTEiJ_T0057234.1 MGP_CASTEiJ_G0025602.1 mouse_genomes_project 2 126799163 126852520 + Sema6d protein_coding retained_intron MGP_CASTEiJ_T0057235.1 MGP_CASTEiJ_G0025602.1 mouse_genomes_project 2 126799353 126857422 + MGP_CASTEiJ_P0057235 Sema6d protein_coding protein_coding MGP_CASTEiJ_T0057236.1 MGP_CASTEiJ_G0025602.1 mouse_genomes_project 2 126799353 126857422 + MGP_CASTEiJ_P0057236 Sema6d protein_coding protein_coding MGP_CASTEiJ_T0057237.1 MGP_CASTEiJ_G0025602.1 mouse_genomes_project 2 126799353 126855606 + MGP_CASTEiJ_P0057237 Sema6d protein_coding protein_coding MGP_CASTEiJ_T0057238.1 MGP_CASTEiJ_G0025602.1 mouse_genomes_project 2 126799353 126857422 + MGP_CASTEiJ_P0057238 Sema6d protein_coding protein_coding MGP_CASTEiJ_T0057239.1 MGP_CASTEiJ_G0025602.1 mouse_genomes_project 2 126799658 126855606 + MGP_CASTEiJ_P0057239 Sema6d protein_coding protein_coding MGP_CASTEiJ_T0057240.1 MGP_CASTEiJ_G0025602.1 mouse_genomes_project 2 126842948 126857430 + MGP_CASTEiJ_P0057240 Sema6d protein_coding unknown_likely_coding MGP_CASTEiJ_T0057241.1 MGP_CASTEiJ_G0025602.1 mouse_genomes_project 2 126843168 126854946 + MGP_CASTEiJ_P0057241 Sema6d protein_coding protein_coding MGP_CASTEiJ_T0057242.1 MGP_CASTEiJ_G0025602.1 mouse_genomes_project 2 126843731 126860004 + MGP_CASTEiJ_P0057242 Sema6d protein_coding unknown_likely_coding MGP_CASTEiJ_T0100935.1 MGP_CASTEiJ_G0037848.1 mouse_genomes_project 2 173429919 173430048 - Gm25214 snoRNA snoRNA MGP_CASTEiJ_T0055097.1 MGP_CASTEiJ_G0025012.1 mouse_genomes_project 2 70262967 70380868 - Tlk1 protein_coding processed_transcript MGP_CASTEiJ_T0055098.1 MGP_CASTEiJ_G0025012.1 mouse_genomes_project 2 70262967 70381199 - MGP_CASTEiJ_P0055098 Tlk1 protein_coding protein_coding MGP_CASTEiJ_T0055099.1 MGP_CASTEiJ_G0025012.1 mouse_genomes_project 2 70264703 70268741 - Tlk1 protein_coding processed_transcript MGP_CASTEiJ_T0055100.1 MGP_CASTEiJ_G0025012.1 mouse_genomes_project 2 70266853 70268421 - Tlk1 protein_coding processed_transcript MGP_CASTEiJ_T0055101.1 MGP_CASTEiJ_G0025012.1 mouse_genomes_project 2 70271538 70380429 - MGP_CASTEiJ_P0055101 Tlk1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055102.1 MGP_CASTEiJ_G0025012.1 mouse_genomes_project 2 70298994 70380794 - Tlk1 protein_coding processed_transcript MGP_CASTEiJ_T0055103.1 MGP_CASTEiJ_G0025012.1 mouse_genomes_project 2 70302200 70380782 - Tlk1 protein_coding processed_transcript MGP_CASTEiJ_T0055104.1 MGP_CASTEiJ_G0025012.1 mouse_genomes_project 2 70303957 70380699 - Tlk1 protein_coding processed_transcript MGP_CASTEiJ_T0056086.1 MGP_CASTEiJ_G0025348.1 mouse_genomes_project 2 92923521 92971879 - MGP_CASTEiJ_P0056086 Creb3l1 protein_coding protein_coding MGP_CASTEiJ_T0053288.1 MGP_CASTEiJ_G0024697.1 mouse_genomes_project 2 24537337 24538708 - Surf1 protein_coding retained_intron MGP_CASTEiJ_T0053289.1 MGP_CASTEiJ_G0024697.1 mouse_genomes_project 2 24537339 24540479 - MGP_CASTEiJ_P0053289 Surf1 protein_coding protein_coding MGP_CASTEiJ_T0053290.1 MGP_CASTEiJ_G0024697.1 mouse_genomes_project 2 24537339 24540249 - MGP_CASTEiJ_P0053290 Surf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053291.1 MGP_CASTEiJ_G0024697.1 mouse_genomes_project 2 24537339 24540417 - MGP_CASTEiJ_P0053291 Surf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053292.1 MGP_CASTEiJ_G0024697.1 mouse_genomes_project 2 24537532 24540269 - MGP_CASTEiJ_P0053292 Surf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053293.1 MGP_CASTEiJ_G0024697.1 mouse_genomes_project 2 24537532 24540294 - MGP_CASTEiJ_P0053293 Surf1 protein_coding protein_coding MGP_CASTEiJ_T0053294.1 MGP_CASTEiJ_G0024697.1 mouse_genomes_project 2 24538180 24540260 - Surf1 protein_coding retained_intron MGP_CASTEiJ_T0053295.1 MGP_CASTEiJ_G0024697.1 mouse_genomes_project 2 24538424 24539441 - Surf1 protein_coding retained_intron MGP_CASTEiJ_T0053296.1 MGP_CASTEiJ_G0024697.1 mouse_genomes_project 2 24538806 24540281 - MGP_CASTEiJ_P0053296 Surf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053297.1 MGP_CASTEiJ_G0024697.1 mouse_genomes_project 2 24539405 24540294 - MGP_CASTEiJ_P0053297 Surf1 protein_coding protein_coding MGP_CASTEiJ_T0053820.1 MGP_CASTEiJ_G0024780.1 mouse_genomes_project 2 29191331 29241847 + MGP_CASTEiJ_P0053820 protein_coding unknown_likely_coding MGP_CASTEiJ_T0053821.1 MGP_CASTEiJ_G0024780.1 mouse_genomes_project 2 29191348 29238693 + MGP_CASTEiJ_P0053821 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054070.1 MGP_CASTEiJ_G0024818.1 mouse_genomes_project 2 30820737 30826812 + MGP_CASTEiJ_P0054070 Tor2a protein_coding protein_coding MGP_CASTEiJ_T0054071.1 MGP_CASTEiJ_G0024818.1 mouse_genomes_project 2 30820748 30826507 + MGP_CASTEiJ_P0054071 Tor2a protein_coding protein_coding MGP_CASTEiJ_T0054072.1 MGP_CASTEiJ_G0024818.1 mouse_genomes_project 2 30820758 30826298 + MGP_CASTEiJ_P0054072 Tor2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054073.1 MGP_CASTEiJ_G0024818.1 mouse_genomes_project 2 30820763 30826812 + MGP_CASTEiJ_P0054073 Tor2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054074.1 MGP_CASTEiJ_G0024818.1 mouse_genomes_project 2 30820779 30826810 + Tor2a protein_coding retained_intron MGP_CASTEiJ_T0054075.1 MGP_CASTEiJ_G0024818.1 mouse_genomes_project 2 30820794 30821490 + Tor2a protein_coding processed_transcript MGP_CASTEiJ_T0054076.1 MGP_CASTEiJ_G0024818.1 mouse_genomes_project 2 30820822 30826162 + MGP_CASTEiJ_P0054076 Tor2a protein_coding protein_coding MGP_CASTEiJ_T0054077.1 MGP_CASTEiJ_G0024818.1 mouse_genomes_project 2 30823804 30826357 + Tor2a protein_coding retained_intron MGP_CASTEiJ_T0004041.1 MGP_CASTEiJ_G0003579.1 mouse_genomes_project 2 171294367 171295469 + Gm17096 antisense antisense MGP_CASTEiJ_T0055782.1 MGP_CASTEiJ_G0025269.1 mouse_genomes_project 2 89955069 89956005 - MGP_CASTEiJ_P0055782 Olfr1222 protein_coding protein_coding MGP_CASTEiJ_T0055783.1 MGP_CASTEiJ_G0025269.1 mouse_genomes_project 2 89955354 89956007 - MGP_CASTEiJ_P0055783 Olfr1222 protein_coding protein_coding MGP_CASTEiJ_T0053340.1 MGP_CASTEiJ_G0024707.1 mouse_genomes_project 2 24745127 24776189 - MGP_CASTEiJ_P0053340 Fam163b protein_coding protein_coding MGP_CASTEiJ_T0011193.1 MGP_CASTEiJ_G0009381.1 mouse_genomes_project 2 171009187 171009535 + Gm25265 misc_RNA misc_RNA MGP_CASTEiJ_T0055447.1 MGP_CASTEiJ_G0025076.1 mouse_genomes_project 2 80445514 80448399 + MGP_CASTEiJ_P0055447 Prdx6b protein_coding protein_coding MGP_CASTEiJ_T0006961.1 MGP_CASTEiJ_G0005728.1 mouse_genomes_project 2 16804805 16811166 + lincRNA lincRNA MGP_CASTEiJ_T0006962.1 MGP_CASTEiJ_G0005728.1 mouse_genomes_project 2 16805324 16813023 + lincRNA lincRNA MGP_CASTEiJ_T0006963.1 MGP_CASTEiJ_G0005728.1 mouse_genomes_project 2 16805423 16810900 + lincRNA lincRNA MGP_CASTEiJ_T0099640.1 MGP_CASTEiJ_G0036553.1 mouse_genomes_project 2 74453206 74453313 + Gm22975 snRNA snRNA MGP_CASTEiJ_T0059129.1 MGP_CASTEiJ_G0026054.1 mouse_genomes_project 2 169005886 169009854 - MGP_CASTEiJ_P0059129 Neurl2 protein_coding protein_coding MGP_CASTEiJ_T0053341.1 MGP_CASTEiJ_G0024708.1 mouse_genomes_project 2 24800397 24818302 + MGP_CASTEiJ_P0053341 Dbh protein_coding protein_coding MGP_CASTEiJ_T0053342.1 MGP_CASTEiJ_G0024708.1 mouse_genomes_project 2 24812182 24812462 + Dbh protein_coding processed_transcript MGP_CASTEiJ_T0003812.1 MGP_CASTEiJ_G0003413.1 mouse_genomes_project 2 27117446 27167554 - Gm13402 antisense antisense MGP_CASTEiJ_T0054480.1 MGP_CASTEiJ_G0024907.1 mouse_genomes_project 2 37379335 37509089 - MGP_CASTEiJ_P0054480 Scai protein_coding protein_coding MGP_CASTEiJ_T0054481.1 MGP_CASTEiJ_G0024907.1 mouse_genomes_project 2 37387886 37509060 - MGP_CASTEiJ_P0054481 Scai protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054482.1 MGP_CASTEiJ_G0024907.1 mouse_genomes_project 2 37388128 37509047 - MGP_CASTEiJ_P0054482 Scai protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054483.1 MGP_CASTEiJ_G0024907.1 mouse_genomes_project 2 37388193 37413458 - MGP_CASTEiJ_P0054483 Scai protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054484.1 MGP_CASTEiJ_G0024907.1 mouse_genomes_project 2 37393082 37509085 - MGP_CASTEiJ_P0054484 Scai protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054485.1 MGP_CASTEiJ_G0024907.1 mouse_genomes_project 2 37416452 37509089 - Scai protein_coding retained_intron MGP_CASTEiJ_T0054486.1 MGP_CASTEiJ_G0024907.1 mouse_genomes_project 2 37419437 37509085 - Scai protein_coding retained_intron MGP_CASTEiJ_T0054487.1 MGP_CASTEiJ_G0024907.1 mouse_genomes_project 2 37422664 37424714 - Scai protein_coding retained_intron MGP_CASTEiJ_T0054488.1 MGP_CASTEiJ_G0024907.1 mouse_genomes_project 2 37422813 37437805 - Scai protein_coding retained_intron MGP_CASTEiJ_T0058643.1 MGP_CASTEiJ_G0025938.1 mouse_genomes_project 2 159789770 159791532 + MGP_CASTEiJ_P0058643 Romo1 protein_coding protein_coding MGP_CASTEiJ_T0058644.1 MGP_CASTEiJ_G0025938.1 mouse_genomes_project 2 159789964 159791529 + MGP_CASTEiJ_P0058644 Romo1 protein_coding protein_coding MGP_CASTEiJ_T0058645.1 MGP_CASTEiJ_G0025938.1 mouse_genomes_project 2 159789968 159791518 + MGP_CASTEiJ_P0058645 Romo1 protein_coding protein_coding MGP_CASTEiJ_T0058646.1 MGP_CASTEiJ_G0025938.1 mouse_genomes_project 2 159789971 159791529 + MGP_CASTEiJ_P0058646 Romo1 protein_coding protein_coding MGP_CASTEiJ_T0007028.1 MGP_CASTEiJ_G0005779.1 mouse_genomes_project 2 63538037 63550384 - Gm13575 lincRNA lincRNA MGP_CASTEiJ_T0003902.1 MGP_CASTEiJ_G0003480.1 mouse_genomes_project 2 83948708 83949168 - Gm13686 antisense antisense MGP_CASTEiJ_T0057049.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123147854 123166524 - Trp53bp1 protein_coding processed_transcript MGP_CASTEiJ_T0057050.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123149412 123227339 - MGP_CASTEiJ_P0057050 Trp53bp1 protein_coding protein_coding MGP_CASTEiJ_T0057051.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123149412 123227405 - MGP_CASTEiJ_P0057051 Trp53bp1 protein_coding protein_coding MGP_CASTEiJ_T0057052.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123152820 123190277 - MGP_CASTEiJ_P0057052 Trp53bp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057053.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123154208 123159545 - Trp53bp1 protein_coding processed_transcript MGP_CASTEiJ_T0057054.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123157264 123162310 - MGP_CASTEiJ_P0057054 Trp53bp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057055.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123159644 123163126 - Trp53bp1 protein_coding processed_transcript MGP_CASTEiJ_T0057056.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123162971 123175820 - MGP_CASTEiJ_P0057056 Trp53bp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057057.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123163396 123175811 - Trp53bp1 protein_coding retained_intron MGP_CASTEiJ_T0057058.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123165850 123172959 - Trp53bp1 protein_coding processed_transcript MGP_CASTEiJ_T0057059.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123170446 123175958 - Trp53bp1 protein_coding retained_intron MGP_CASTEiJ_T0057060.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123170682 123227319 - MGP_CASTEiJ_P0057060 Trp53bp1 protein_coding protein_coding MGP_CASTEiJ_T0057061.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123182706 123189960 - MGP_CASTEiJ_P0057061 Trp53bp1 protein_coding protein_coding MGP_CASTEiJ_T0057062.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123186361 123190092 - Trp53bp1 protein_coding processed_transcript MGP_CASTEiJ_T0057063.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123191094 123208239 - MGP_CASTEiJ_P0057063 Trp53bp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057064.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123212733 123227367 - Trp53bp1 protein_coding processed_transcript MGP_CASTEiJ_T0057065.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123216505 123226284 - Trp53bp1 protein_coding retained_intron MGP_CASTEiJ_T0057066.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123223310 123227359 - Trp53bp1 protein_coding retained_intron MGP_CASTEiJ_T0057067.1 MGP_CASTEiJ_G0025567.1 mouse_genomes_project 2 123225627 123227368 - Trp53bp1 protein_coding retained_intron MGP_CASTEiJ_T0054679.1 MGP_CASTEiJ_G0024938.1 mouse_genomes_project 2 53324299 54009280 + MGP_CASTEiJ_P0054679 Galnt13 protein_coding protein_coding MGP_CASTEiJ_T0054680.1 MGP_CASTEiJ_G0024938.1 mouse_genomes_project 2 53324369 54009280 + MGP_CASTEiJ_P0054680 Galnt13 protein_coding protein_coding MGP_CASTEiJ_T0054681.1 MGP_CASTEiJ_G0024938.1 mouse_genomes_project 2 53324369 54009280 + MGP_CASTEiJ_P0054681 Galnt13 protein_coding protein_coding MGP_CASTEiJ_T0054682.1 MGP_CASTEiJ_G0024938.1 mouse_genomes_project 2 53324473 53626717 + MGP_CASTEiJ_P0054682 Galnt13 protein_coding protein_coding MGP_CASTEiJ_T0054683.1 MGP_CASTEiJ_G0024938.1 mouse_genomes_project 2 53421372 54004288 + MGP_CASTEiJ_P0054683 Galnt13 protein_coding protein_coding MGP_CASTEiJ_T0053114.1 MGP_CASTEiJ_G0024671.1 mouse_genomes_project 2 23447116 23498887 + MGP_CASTEiJ_P0053114 Kcnt1 protein_coding protein_coding MGP_CASTEiJ_T0053115.1 MGP_CASTEiJ_G0024671.1 mouse_genomes_project 2 23447177 23472011 + Kcnt1 protein_coding retained_intron MGP_CASTEiJ_T0053116.1 MGP_CASTEiJ_G0024671.1 mouse_genomes_project 2 23447236 23497959 + MGP_CASTEiJ_P0053116 Kcnt1 protein_coding protein_coding MGP_CASTEiJ_T0053117.1 MGP_CASTEiJ_G0024671.1 mouse_genomes_project 2 23447267 23513707 + MGP_CASTEiJ_P0053117 Kcnt1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0053118.1 MGP_CASTEiJ_G0024671.1 mouse_genomes_project 2 23447350 23497959 + MGP_CASTEiJ_P0053118 Kcnt1 protein_coding protein_coding MGP_CASTEiJ_T0053119.1 MGP_CASTEiJ_G0024671.1 mouse_genomes_project 2 23460693 23499402 + MGP_CASTEiJ_P0053119 Kcnt1 protein_coding protein_coding MGP_CASTEiJ_T0053120.1 MGP_CASTEiJ_G0024671.1 mouse_genomes_project 2 23460767 23478200 + Kcnt1 protein_coding retained_intron MGP_CASTEiJ_T0053121.1 MGP_CASTEiJ_G0024671.1 mouse_genomes_project 2 23460773 23498453 + MGP_CASTEiJ_P0053121 Kcnt1 protein_coding protein_coding MGP_CASTEiJ_T0053122.1 MGP_CASTEiJ_G0024671.1 mouse_genomes_project 2 23460780 23498922 + Kcnt1 protein_coding retained_intron MGP_CASTEiJ_T0053123.1 MGP_CASTEiJ_G0024671.1 mouse_genomes_project 2 23460783 23500115 + MGP_CASTEiJ_P0053123 Kcnt1 protein_coding protein_coding MGP_CASTEiJ_T0053124.1 MGP_CASTEiJ_G0024671.1 mouse_genomes_project 2 23460791 23497959 + MGP_CASTEiJ_P0053124 Kcnt1 protein_coding protein_coding MGP_CASTEiJ_T0053125.1 MGP_CASTEiJ_G0024671.1 mouse_genomes_project 2 23477365 23498434 + Kcnt1 protein_coding retained_intron MGP_CASTEiJ_T0053126.1 MGP_CASTEiJ_G0024671.1 mouse_genomes_project 2 23482759 23485260 + MGP_CASTEiJ_P0053126 Kcnt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053127.1 MGP_CASTEiJ_G0024671.1 mouse_genomes_project 2 23485366 23491804 + MGP_CASTEiJ_P0053127 Kcnt1 protein_coding protein_coding MGP_CASTEiJ_T0053128.1 MGP_CASTEiJ_G0024671.1 mouse_genomes_project 2 23489952 23498765 + Kcnt1 protein_coding retained_intron MGP_CASTEiJ_T0053129.1 MGP_CASTEiJ_G0024671.1 mouse_genomes_project 2 23492791 23498082 + Kcnt1 protein_coding retained_intron MGP_CASTEiJ_T0098866.1 MGP_CASTEiJ_G0035791.1 mouse_genomes_project 2 18443588 18453192 - Gm13380 sense_intronic sense_intronic MGP_CASTEiJ_T0013427.1 MGP_CASTEiJ_G0011590.1 mouse_genomes_project 2 163749054 163749920 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003903.1 MGP_CASTEiJ_G0003481.1 mouse_genomes_project 2 85459241 85494876 + Gm13713 antisense antisense MGP_CASTEiJ_T0003904.1 MGP_CASTEiJ_G0003481.1 mouse_genomes_project 2 85459241 85473503 + Gm13713 antisense antisense MGP_CASTEiJ_T0057490.1 MGP_CASTEiJ_G0025664.1 mouse_genomes_project 2 131515228 131519651 + MGP_CASTEiJ_P0057490 Chchd5 protein_coding protein_coding MGP_CASTEiJ_T0057491.1 MGP_CASTEiJ_G0025664.1 mouse_genomes_project 2 131515332 131519530 + Chchd5 protein_coding processed_transcript MGP_CASTEiJ_T0057492.1 MGP_CASTEiJ_G0025664.1 mouse_genomes_project 2 131515378 131518997 + Chchd5 protein_coding retained_intron MGP_CASTEiJ_T0054699.1 MGP_CASTEiJ_G0024942.1 mouse_genomes_project 2 56950349 56992918 + MGP_CASTEiJ_P0054699 Galnt5 protein_coding protein_coding MGP_CASTEiJ_T0054700.1 MGP_CASTEiJ_G0024942.1 mouse_genomes_project 2 56950349 56998845 + MGP_CASTEiJ_P0054700 Galnt5 protein_coding protein_coding MGP_CASTEiJ_T0101755.1 MGP_CASTEiJ_G0038552.1 mouse_genomes_project 2 87364120 87365068 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0004016.1 MGP_CASTEiJ_G0003562.1 mouse_genomes_project 2 162001192 162004936 + 1700060C20Rik antisense antisense MGP_CASTEiJ_T0055620.1 MGP_CASTEiJ_G0025124.1 mouse_genomes_project 2 86045556 86047055 - MGP_CASTEiJ_P0055620 protein_coding protein_coding MGP_CASTEiJ_T0055621.1 MGP_CASTEiJ_G0025124.1 mouse_genomes_project 2 86045556 86050407 - MGP_CASTEiJ_P0055621 protein_coding protein_coding MGP_CASTEiJ_T0010091.1 MGP_CASTEiJ_G0008279.1 mouse_genomes_project 2 11595978 11596057 + Mir511 miRNA miRNA MGP_CASTEiJ_T0054638.1 MGP_CASTEiJ_G0024930.1 mouse_genomes_project 2 50995803 51208787 - MGP_CASTEiJ_P0054638 Neb protein_coding protein_coding MGP_CASTEiJ_T0054639.1 MGP_CASTEiJ_G0024930.1 mouse_genomes_project 2 50995818 51205100 - MGP_CASTEiJ_P0054639 Neb protein_coding protein_coding MGP_CASTEiJ_T0054640.1 MGP_CASTEiJ_G0024930.1 mouse_genomes_project 2 50995818 51084806 - MGP_CASTEiJ_P0054640 Neb protein_coding protein_coding MGP_CASTEiJ_T0054641.1 MGP_CASTEiJ_G0024930.1 mouse_genomes_project 2 50996272 51017128 - Neb protein_coding processed_transcript MGP_CASTEiJ_T0054642.1 MGP_CASTEiJ_G0024930.1 mouse_genomes_project 2 50996413 51204447 - MGP_CASTEiJ_P0054642 Neb protein_coding unknown_likely_coding MGP_CASTEiJ_T0054643.1 MGP_CASTEiJ_G0024930.1 mouse_genomes_project 2 50996416 51037103 - MGP_CASTEiJ_P0054643 Neb protein_coding protein_coding MGP_CASTEiJ_T0054644.1 MGP_CASTEiJ_G0024930.1 mouse_genomes_project 2 51015548 51022222 - Neb protein_coding processed_transcript MGP_CASTEiJ_T0054645.1 MGP_CASTEiJ_G0024930.1 mouse_genomes_project 2 51034266 51036678 - Neb protein_coding processed_transcript MGP_CASTEiJ_T0054646.1 MGP_CASTEiJ_G0024930.1 mouse_genomes_project 2 51038535 51052705 - MGP_CASTEiJ_P0054646 Neb protein_coding protein_coding MGP_CASTEiJ_T0054647.1 MGP_CASTEiJ_G0024930.1 mouse_genomes_project 2 51082868 51119587 - MGP_CASTEiJ_P0054647 Neb protein_coding protein_coding MGP_CASTEiJ_T0054648.1 MGP_CASTEiJ_G0024930.1 mouse_genomes_project 2 51189366 51205728 - Neb protein_coding processed_transcript MGP_CASTEiJ_T0054649.1 MGP_CASTEiJ_G0024930.1 mouse_genomes_project 2 51198843 51208787 - Neb protein_coding processed_transcript MGP_CASTEiJ_T0010139.1 MGP_CASTEiJ_G0008327.1 mouse_genomes_project 2 74565650 74565718 + Mir10b miRNA miRNA MGP_CASTEiJ_T0058074.1 MGP_CASTEiJ_G0025793.1 mouse_genomes_project 2 152020947 152023866 - MGP_CASTEiJ_P0058074 Cst11 protein_coding protein_coding MGP_CASTEiJ_T0055276.1 MGP_CASTEiJ_G0025042.1 mouse_genomes_project 2 74512003 74514694 + MGP_CASTEiJ_P0055276 Hoxd12 protein_coding protein_coding MGP_CASTEiJ_T0013129.1 MGP_CASTEiJ_G0011292.1 mouse_genomes_project 2 50358215 50359318 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058943.1 MGP_CASTEiJ_G0025991.1 mouse_genomes_project 2 166931297 166934974 + Srsf6 protein_coding retained_intron MGP_CASTEiJ_T0058944.1 MGP_CASTEiJ_G0025991.1 mouse_genomes_project 2 166931297 166936893 + MGP_CASTEiJ_P0058944 Srsf6 protein_coding protein_coding MGP_CASTEiJ_T0058945.1 MGP_CASTEiJ_G0025991.1 mouse_genomes_project 2 166931331 166934792 + MGP_CASTEiJ_P0058945 Srsf6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058946.1 MGP_CASTEiJ_G0025991.1 mouse_genomes_project 2 166931430 166933274 + MGP_CASTEiJ_P0058946 Srsf6 protein_coding protein_coding MGP_CASTEiJ_T0059753.1 MGP_CASTEiJ_G0026187.1 mouse_genomes_project 2 184045367 184046892 + MGP_CASTEiJ_P0059753 Ppdpf protein_coding protein_coding MGP_CASTEiJ_T0059754.1 MGP_CASTEiJ_G0026187.1 mouse_genomes_project 2 184045416 184046862 + Ppdpf protein_coding retained_intron MGP_CASTEiJ_T0059755.1 MGP_CASTEiJ_G0026187.1 mouse_genomes_project 2 184045456 184046625 + MGP_CASTEiJ_P0059755 Ppdpf protein_coding protein_coding MGP_CASTEiJ_T0059756.1 MGP_CASTEiJ_G0026187.1 mouse_genomes_project 2 184045467 184046625 + Ppdpf protein_coding retained_intron MGP_CASTEiJ_T0059757.1 MGP_CASTEiJ_G0026187.1 mouse_genomes_project 2 184045655 184046625 + Ppdpf protein_coding retained_intron MGP_CASTEiJ_T0059758.1 MGP_CASTEiJ_G0026187.1 mouse_genomes_project 2 184046033 184046625 + Ppdpf protein_coding retained_intron MGP_CASTEiJ_T0016997.1 MGP_CASTEiJ_G0014714.1 mouse_genomes_project 2 23357196 23369098 - Gm13538 processed_transcript processed_transcript MGP_CASTEiJ_T0013362.1 MGP_CASTEiJ_G0011525.1 mouse_genomes_project 2 142940954 142941392 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058196.1 MGP_CASTEiJ_G0025829.1 mouse_genomes_project 2 155365679 155383674 + MGP_CASTEiJ_P0058196 Scrt2 protein_coding protein_coding MGP_CASTEiJ_T0010112.1 MGP_CASTEiJ_G0008300.1 mouse_genomes_project 2 27804515 27804586 + Mir6997 miRNA miRNA MGP_CASTEiJ_T0013266.1 MGP_CASTEiJ_G0011429.1 mouse_genomes_project 2 101600514 101601301 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099643.1 MGP_CASTEiJ_G0036556.1 mouse_genomes_project 2 80735961 80736064 + Gm24461 snRNA snRNA MGP_CASTEiJ_T0100870.1 MGP_CASTEiJ_G0037783.1 mouse_genomes_project 2 41253963 41254095 + Gm24350 snoRNA snoRNA MGP_CASTEiJ_T0007176.1 MGP_CASTEiJ_G0005898.1 mouse_genomes_project 2 155106645 155109665 + Gm14155 lincRNA lincRNA MGP_CASTEiJ_T0055744.1 MGP_CASTEiJ_G0025234.1 mouse_genomes_project 2 88700781 88701449 - MGP_CASTEiJ_P0055744 protein_coding protein_coding MGP_CASTEiJ_T0007037.1 MGP_CASTEiJ_G0005788.1 mouse_genomes_project 2 72399536 72429703 + 8430437L04Rik lincRNA lincRNA MGP_CASTEiJ_T0055723.1 MGP_CASTEiJ_G0025214.1 mouse_genomes_project 2 88337678 88338623 + MGP_CASTEiJ_P0055723 Olfr1143 protein_coding protein_coding MGP_CASTEiJ_T0006973.1 MGP_CASTEiJ_G0005735.1 mouse_genomes_project 2 23130115 23134869 + Gm26702 lincRNA lincRNA MGP_CASTEiJ_T0016979.1 MGP_CASTEiJ_G0014705.1 mouse_genomes_project 2 1265931 1281176 - Gm13187 processed_transcript processed_transcript MGP_CASTEiJ_T0016980.1 MGP_CASTEiJ_G0014705.1 mouse_genomes_project 2 1271533 1281231 - Gm13187 processed_transcript processed_transcript MGP_CASTEiJ_T0016981.1 MGP_CASTEiJ_G0014705.1 mouse_genomes_project 2 1280574 1281231 - Gm13187 processed_transcript processed_transcript MGP_CASTEiJ_T0010101.1 MGP_CASTEiJ_G0008289.1 mouse_genomes_project 2 22587874 22587937 + Mir7664 miRNA miRNA MGP_CASTEiJ_T0004052.1 MGP_CASTEiJ_G0003590.1 mouse_genomes_project 2 178081466 178087376 + Ctcflos antisense antisense MGP_CASTEiJ_T0004053.1 MGP_CASTEiJ_G0003590.1 mouse_genomes_project 2 178081483 178104730 + Ctcflos antisense antisense MGP_CASTEiJ_T0004054.1 MGP_CASTEiJ_G0003590.1 mouse_genomes_project 2 178092346 178101751 + Ctcflos antisense antisense MGP_CASTEiJ_T0004055.1 MGP_CASTEiJ_G0003590.1 mouse_genomes_project 2 178097239 178105665 + Ctcflos antisense antisense MGP_CASTEiJ_T0003927.1 MGP_CASTEiJ_G0003494.1 mouse_genomes_project 2 114937360 114997467 - Gm13963 antisense antisense MGP_CASTEiJ_T0058683.1 MGP_CASTEiJ_G0025941.1 mouse_genomes_project 2 159964884 159965742 - MGP_CASTEiJ_P0058683 Scand1 protein_coding protein_coding MGP_CASTEiJ_T0052745.1 MGP_CASTEiJ_G0024598.1 mouse_genomes_project 2 21454268 21497679 - MGP_CASTEiJ_P0052745 Hnmt protein_coding unknown_likely_coding MGP_CASTEiJ_T0007148.1 MGP_CASTEiJ_G0005875.1 mouse_genomes_project 2 136094540 136097244 + Gm14100 lincRNA lincRNA MGP_CASTEiJ_T0017127.1 MGP_CASTEiJ_G0014786.1 mouse_genomes_project 2 133354863 133381504 - A730017L22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017128.1 MGP_CASTEiJ_G0014786.1 mouse_genomes_project 2 133358799 133381527 - A730017L22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0101568.1 MGP_CASTEiJ_G0038442.1 mouse_genomes_project 2 37474911 37479673 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101569.1 MGP_CASTEiJ_G0038442.1 mouse_genomes_project 2 37478656 37479427 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0013410.1 MGP_CASTEiJ_G0011573.1 mouse_genomes_project 2 159079691 159080017 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055615.1 MGP_CASTEiJ_G0025119.1 mouse_genomes_project 2 85828911 85864530 - MGP_CASTEiJ_P0055615 4833423E24Rik protein_coding protein_coding MGP_CASTEiJ_T0017051.1 MGP_CASTEiJ_G0014752.1 mouse_genomes_project 2 88701360 88817719 - processed_transcript processed_transcript MGP_CASTEiJ_T0013006.1 MGP_CASTEiJ_G0011169.1 mouse_genomes_project 2 1057264 1057825 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058466.1 MGP_CASTEiJ_G0025911.1 mouse_genomes_project 2 158847280 158873816 - Pigu protein_coding processed_transcript MGP_CASTEiJ_T0058467.1 MGP_CASTEiJ_G0025911.1 mouse_genomes_project 2 158847280 158931769 - MGP_CASTEiJ_P0058467 Pigu protein_coding protein_coding MGP_CASTEiJ_T0058468.1 MGP_CASTEiJ_G0025911.1 mouse_genomes_project 2 158847281 158931763 - MGP_CASTEiJ_P0058468 Pigu protein_coding protein_coding MGP_CASTEiJ_T0058469.1 MGP_CASTEiJ_G0025911.1 mouse_genomes_project 2 158873779 158877219 - Pigu protein_coding processed_transcript MGP_CASTEiJ_T0058470.1 MGP_CASTEiJ_G0025911.1 mouse_genomes_project 2 158905327 158931758 - Pigu protein_coding retained_intron MGP_CASTEiJ_T0055485.1 MGP_CASTEiJ_G0025086.1 mouse_genomes_project 2 83975377 84006491 + Itgav protein_coding retained_intron MGP_CASTEiJ_T0055486.1 MGP_CASTEiJ_G0025086.1 mouse_genomes_project 2 83975377 83999740 + Itgav protein_coding retained_intron MGP_CASTEiJ_T0055487.1 MGP_CASTEiJ_G0025086.1 mouse_genomes_project 2 83975377 83992498 + Itgav protein_coding processed_transcript MGP_CASTEiJ_T0055488.1 MGP_CASTEiJ_G0025086.1 mouse_genomes_project 2 83975377 83976593 + Itgav protein_coding processed_transcript MGP_CASTEiJ_T0055489.1 MGP_CASTEiJ_G0025086.1 mouse_genomes_project 2 83975377 84063478 + MGP_CASTEiJ_P0055489 Itgav protein_coding protein_coding MGP_CASTEiJ_T0055490.1 MGP_CASTEiJ_G0025086.1 mouse_genomes_project 2 83975377 83999312 + MGP_CASTEiJ_P0055490 Itgav protein_coding protein_coding MGP_CASTEiJ_T0055491.1 MGP_CASTEiJ_G0025086.1 mouse_genomes_project 2 83975377 84063480 + MGP_CASTEiJ_P0055491 Itgav protein_coding protein_coding MGP_CASTEiJ_T0055492.1 MGP_CASTEiJ_G0025086.1 mouse_genomes_project 2 84058410 84060548 + MGP_CASTEiJ_P0055492 Itgav protein_coding protein_coding MGP_CASTEiJ_T0055493.1 MGP_CASTEiJ_G0025086.1 mouse_genomes_project 2 84059483 84063478 + MGP_CASTEiJ_P0055493 Itgav protein_coding protein_coding MGP_CASTEiJ_T0058351.1 MGP_CASTEiJ_G0025876.1 mouse_genomes_project 2 157170242 157199682 + MGP_CASTEiJ_P0058351 Mapre1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058352.1 MGP_CASTEiJ_G0025876.1 mouse_genomes_project 2 157170560 157190836 + Mapre1 protein_coding processed_transcript MGP_CASTEiJ_T0058353.1 MGP_CASTEiJ_G0025876.1 mouse_genomes_project 2 157174345 157188790 + Mapre1 protein_coding processed_transcript MGP_CASTEiJ_T0013301.1 MGP_CASTEiJ_G0011464.1 mouse_genomes_project 2 113214847 113215783 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058906.1 MGP_CASTEiJ_G0025986.1 mouse_genomes_project 2 164693156 164825489 - Zhx3 protein_coding processed_transcript MGP_CASTEiJ_T0058914.1 MGP_CASTEiJ_G0025986.1 mouse_genomes_project 2 164709610 164825057 - MGP_CASTEiJ_P0058914 Zhx3 protein_coding protein_coding MGP_CASTEiJ_T0058915.1 MGP_CASTEiJ_G0025986.1 mouse_genomes_project 2 164710217 164812165 - MGP_CASTEiJ_P0058915 Zhx3 protein_coding protein_coding MGP_CASTEiJ_T0058916.1 MGP_CASTEiJ_G0025986.1 mouse_genomes_project 2 164714868 164825481 - MGP_CASTEiJ_P0058916 Zhx3 protein_coding protein_coding MGP_CASTEiJ_T0058917.1 MGP_CASTEiJ_G0025986.1 mouse_genomes_project 2 164740830 164825320 - MGP_CASTEiJ_P0058917 Zhx3 protein_coding protein_coding MGP_CASTEiJ_T0058918.1 MGP_CASTEiJ_G0025986.1 mouse_genomes_project 2 164740867 164825481 - MGP_CASTEiJ_P0058918 Zhx3 protein_coding protein_coding MGP_CASTEiJ_T0001047.1 MGP_CASTEiJ_G0000983.1 mouse_genomes_project 2 119815051 119816685 + TEC TEC MGP_CASTEiJ_T0059897.1 MGP_CASTEiJ_G0026210.1 mouse_genomes_project 2 184592197 184593853 - MGP_CASTEiJ_P0059897 Lkaaear1 protein_coding protein_coding MGP_CASTEiJ_T0059898.1 MGP_CASTEiJ_G0026210.1 mouse_genomes_project 2 184592200 184592821 - MGP_CASTEiJ_P0059898 Lkaaear1 protein_coding protein_coding MGP_CASTEiJ_T0102232.1 MGP_CASTEiJ_G0038957.1 mouse_genomes_project 2 87502330 87503268 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0017062.1 MGP_CASTEiJ_G0014757.1 mouse_genomes_project 2 92066498 92073167 - Gm13783 processed_transcript processed_transcript MGP_CASTEiJ_T0058490.1 MGP_CASTEiJ_G0025915.1 mouse_genomes_project 2 159114396 159160122 + MGP_CASTEiJ_P0058490 Acss2 protein_coding protein_coding MGP_CASTEiJ_T0058491.1 MGP_CASTEiJ_G0025915.1 mouse_genomes_project 2 159114481 159121736 + Acss2 protein_coding retained_intron MGP_CASTEiJ_T0058492.1 MGP_CASTEiJ_G0025915.1 mouse_genomes_project 2 159114505 159183146 + MGP_CASTEiJ_P0058492 Acss2 protein_coding protein_coding MGP_CASTEiJ_T0058493.1 MGP_CASTEiJ_G0025915.1 mouse_genomes_project 2 159114517 159149764 + Acss2 protein_coding retained_intron MGP_CASTEiJ_T0058494.1 MGP_CASTEiJ_G0025915.1 mouse_genomes_project 2 159114555 159159456 + MGP_CASTEiJ_P0058494 Acss2 protein_coding protein_coding MGP_CASTEiJ_T0058495.1 MGP_CASTEiJ_G0025915.1 mouse_genomes_project 2 159114555 159159456 + MGP_CASTEiJ_P0058495 Acss2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058496.1 MGP_CASTEiJ_G0025915.1 mouse_genomes_project 2 159146596 159147234 + Acss2 protein_coding retained_intron MGP_CASTEiJ_T0058497.1 MGP_CASTEiJ_G0025915.1 mouse_genomes_project 2 159146607 159154740 + MGP_CASTEiJ_P0058497 Acss2 protein_coding protein_coding MGP_CASTEiJ_T0058502.1 MGP_CASTEiJ_G0025915.1 mouse_genomes_project 2 159165924 159182689 + Acss2 protein_coding processed_transcript MGP_CASTEiJ_T0058503.1 MGP_CASTEiJ_G0025915.1 mouse_genomes_project 2 159170213 159174331 + Acss2 protein_coding retained_intron MGP_CASTEiJ_T0013330.1 MGP_CASTEiJ_G0011493.1 mouse_genomes_project 2 129883321 129892762 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054573.1 MGP_CASTEiJ_G0024918.1 mouse_genomes_project 2 47635210 47967490 + MGP_CASTEiJ_P0054573 Mbd5 protein_coding protein_coding MGP_CASTEiJ_T0054574.1 MGP_CASTEiJ_G0024918.1 mouse_genomes_project 2 47635220 47805033 + Mbd5 protein_coding processed_transcript MGP_CASTEiJ_T0054575.1 MGP_CASTEiJ_G0024918.1 mouse_genomes_project 2 47635225 48027009 + MGP_CASTEiJ_P0054575 Mbd5 protein_coding protein_coding MGP_CASTEiJ_T0054576.1 MGP_CASTEiJ_G0024918.1 mouse_genomes_project 2 47635664 47708447 + Mbd5 protein_coding processed_transcript MGP_CASTEiJ_T0054577.1 MGP_CASTEiJ_G0024918.1 mouse_genomes_project 2 47635794 47804897 + Mbd5 protein_coding processed_transcript MGP_CASTEiJ_T0054578.1 MGP_CASTEiJ_G0024918.1 mouse_genomes_project 2 47635872 47951798 + Mbd5 protein_coding processed_transcript MGP_CASTEiJ_T0054579.1 MGP_CASTEiJ_G0024918.1 mouse_genomes_project 2 47635878 47746788 + Mbd5 protein_coding processed_transcript MGP_CASTEiJ_T0054580.1 MGP_CASTEiJ_G0024918.1 mouse_genomes_project 2 47952209 48029749 + MGP_CASTEiJ_P0054580 Mbd5 protein_coding protein_coding MGP_CASTEiJ_T0054581.1 MGP_CASTEiJ_G0024918.1 mouse_genomes_project 2 47952410 47978411 + MGP_CASTEiJ_P0054581 Mbd5 protein_coding protein_coding MGP_CASTEiJ_T0054582.1 MGP_CASTEiJ_G0024918.1 mouse_genomes_project 2 47963495 48027035 + MGP_CASTEiJ_P0054582 Mbd5 protein_coding protein_coding MGP_CASTEiJ_T0054583.1 MGP_CASTEiJ_G0024918.1 mouse_genomes_project 2 47978515 48035457 + MGP_CASTEiJ_P0054583 Mbd5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054584.1 MGP_CASTEiJ_G0024918.1 mouse_genomes_project 2 47985785 48026689 + MGP_CASTEiJ_P0054584 Mbd5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054585.1 MGP_CASTEiJ_G0024918.1 mouse_genomes_project 2 47985786 48026700 + MGP_CASTEiJ_P0054585 Mbd5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054586.1 MGP_CASTEiJ_G0024918.1 mouse_genomes_project 2 47985934 48026923 + MGP_CASTEiJ_P0054586 Mbd5 protein_coding protein_coding MGP_CASTEiJ_T0057477.1 MGP_CASTEiJ_G0025659.1 mouse_genomes_project 2 131335851 131337156 - MGP_CASTEiJ_P0057477 Gm10762 protein_coding protein_coding MGP_CASTEiJ_T0058071.1 MGP_CASTEiJ_G0025792.1 mouse_genomes_project 2 152009100 152014171 + MGP_CASTEiJ_P0058071 Cstl1 protein_coding protein_coding MGP_CASTEiJ_T0058072.1 MGP_CASTEiJ_G0025792.1 mouse_genomes_project 2 152009103 152014116 + MGP_CASTEiJ_P0058072 Cstl1 protein_coding protein_coding MGP_CASTEiJ_T0058073.1 MGP_CASTEiJ_G0025792.1 mouse_genomes_project 2 152009138 152014116 + MGP_CASTEiJ_P0058073 Cstl1 protein_coding protein_coding MGP_CASTEiJ_T0017037.1 MGP_CASTEiJ_G0014739.1 mouse_genomes_project 2 69530932 69534371 + Gm13631 processed_transcript processed_transcript MGP_CASTEiJ_T0010158.1 MGP_CASTEiJ_G0008346.1 mouse_genomes_project 2 105049331 105049427 - Gm22761 miRNA miRNA MGP_CASTEiJ_T0052873.1 MGP_CASTEiJ_G0024617.1 mouse_genomes_project 2 22616582 22626029 - MGP_CASTEiJ_P0052873 Noxa1 protein_coding protein_coding MGP_CASTEiJ_T0052874.1 MGP_CASTEiJ_G0024617.1 mouse_genomes_project 2 22616582 22626011 - MGP_CASTEiJ_P0052874 Noxa1 protein_coding protein_coding MGP_CASTEiJ_T0059369.1 MGP_CASTEiJ_G0026094.1 mouse_genomes_project 2 172103123 172104628 + MGP_CASTEiJ_P0059369 Cebpb protein_coding protein_coding MGP_CASTEiJ_T0055090.1 MGP_CASTEiJ_G0025011.1 mouse_genomes_project 2 70203942 70263197 + MGP_CASTEiJ_P0055090 Gorasp2 protein_coding protein_coding MGP_CASTEiJ_T0055091.1 MGP_CASTEiJ_G0025011.1 mouse_genomes_project 2 70203942 70234186 + MGP_CASTEiJ_P0055091 Gorasp2 protein_coding protein_coding MGP_CASTEiJ_T0055092.1 MGP_CASTEiJ_G0025011.1 mouse_genomes_project 2 70203942 70234204 + MGP_CASTEiJ_P0055092 Gorasp2 protein_coding protein_coding MGP_CASTEiJ_T0055093.1 MGP_CASTEiJ_G0025011.1 mouse_genomes_project 2 70203956 70231816 + MGP_CASTEiJ_P0055093 Gorasp2 protein_coding protein_coding MGP_CASTEiJ_T0055094.1 MGP_CASTEiJ_G0025011.1 mouse_genomes_project 2 70204029 70222094 + MGP_CASTEiJ_P0055094 Gorasp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055095.1 MGP_CASTEiJ_G0025011.1 mouse_genomes_project 2 70204566 70220379 + Gorasp2 protein_coding processed_transcript MGP_CASTEiJ_T0055096.1 MGP_CASTEiJ_G0025011.1 mouse_genomes_project 2 70230268 70234182 + Gorasp2 protein_coding processed_transcript MGP_CASTEiJ_T0053749.1 MGP_CASTEiJ_G0024771.1 mouse_genomes_project 2 28724752 28729893 - Asb6 protein_coding retained_intron MGP_CASTEiJ_T0053750.1 MGP_CASTEiJ_G0024771.1 mouse_genomes_project 2 28724752 28731954 - MGP_CASTEiJ_P0053750 Asb6 protein_coding protein_coding MGP_CASTEiJ_T0053751.1 MGP_CASTEiJ_G0024771.1 mouse_genomes_project 2 28726125 28729904 - MGP_CASTEiJ_P0053751 Asb6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053752.1 MGP_CASTEiJ_G0024771.1 mouse_genomes_project 2 28726819 28729930 - Asb6 protein_coding retained_intron MGP_CASTEiJ_T0053753.1 MGP_CASTEiJ_G0024771.1 mouse_genomes_project 2 28727122 28729127 - Asb6 protein_coding retained_intron MGP_CASTEiJ_T0057987.1 MGP_CASTEiJ_G0025773.1 mouse_genomes_project 2 148236211 148723187 + MGP_CASTEiJ_P0057987 Slc24a3 protein_coding protein_coding MGP_CASTEiJ_T0057988.1 MGP_CASTEiJ_G0025773.1 mouse_genomes_project 2 148236376 148595769 + Slc24a3 protein_coding processed_transcript MGP_CASTEiJ_T0057989.1 MGP_CASTEiJ_G0025773.1 mouse_genomes_project 2 148309869 148723187 + Slc24a3 protein_coding processed_transcript MGP_CASTEiJ_T0057990.1 MGP_CASTEiJ_G0025773.1 mouse_genomes_project 2 148312230 148721382 + MGP_CASTEiJ_P0057990 Slc24a3 protein_coding protein_coding MGP_CASTEiJ_T0057991.1 MGP_CASTEiJ_G0025773.1 mouse_genomes_project 2 148688235 148695579 + Slc24a3 protein_coding processed_transcript MGP_CASTEiJ_T0059517.1 MGP_CASTEiJ_G0026136.1 mouse_genomes_project 2 178685975 178734411 + MGP_CASTEiJ_P0059517 Rab22a protein_coding protein_coding MGP_CASTEiJ_T0059518.1 MGP_CASTEiJ_G0026136.1 mouse_genomes_project 2 178685975 178734383 + MGP_CASTEiJ_P0059518 Rab22a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059519.1 MGP_CASTEiJ_G0026136.1 mouse_genomes_project 2 178686071 178728215 + MGP_CASTEiJ_P0059519 Rab22a protein_coding protein_coding MGP_CASTEiJ_T0059494.1 MGP_CASTEiJ_G0026128.1 mouse_genomes_project 2 177985600 177997717 + MGP_CASTEiJ_P0059494 Rbm38 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059495.1 MGP_CASTEiJ_G0026128.1 mouse_genomes_project 2 177985614 177998532 + Rbm38 protein_coding retained_intron MGP_CASTEiJ_T0059496.1 MGP_CASTEiJ_G0026128.1 mouse_genomes_project 2 177985741 177998538 + MGP_CASTEiJ_P0059496 Rbm38 protein_coding protein_coding MGP_CASTEiJ_T0059497.1 MGP_CASTEiJ_G0026128.1 mouse_genomes_project 2 177985812 177997454 + MGP_CASTEiJ_P0059497 Rbm38 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059498.1 MGP_CASTEiJ_G0026128.1 mouse_genomes_project 2 177986139 177997513 + MGP_CASTEiJ_P0059498 Rbm38 protein_coding protein_coding MGP_CASTEiJ_T0059499.1 MGP_CASTEiJ_G0026128.1 mouse_genomes_project 2 177986750 177998504 + Rbm38 protein_coding retained_intron MGP_CASTEiJ_T0010082.1 MGP_CASTEiJ_G0008270.1 mouse_genomes_project 2 7752314 7752410 + Mir669o miRNA miRNA MGP_CASTEiJ_T0003825.1 MGP_CASTEiJ_G0003425.1 mouse_genomes_project 2 30914827 30916812 + Gm13524 antisense antisense MGP_CASTEiJ_T0058993.1 MGP_CASTEiJ_G0026004.1 mouse_genomes_project 2 167684795 167702078 + MGP_CASTEiJ_P0058993 Ttpal protein_coding protein_coding MGP_CASTEiJ_T0058994.1 MGP_CASTEiJ_G0026004.1 mouse_genomes_project 2 167684803 167699572 + MGP_CASTEiJ_P0058994 Ttpal protein_coding protein_coding MGP_CASTEiJ_T0058995.1 MGP_CASTEiJ_G0026004.1 mouse_genomes_project 2 167684830 167695899 + Ttpal protein_coding retained_intron MGP_CASTEiJ_T0058996.1 MGP_CASTEiJ_G0026004.1 mouse_genomes_project 2 167684830 167689725 + MGP_CASTEiJ_P0058996 Ttpal protein_coding protein_coding MGP_CASTEiJ_T0058997.1 MGP_CASTEiJ_G0026004.1 mouse_genomes_project 2 167684832 167702079 + MGP_CASTEiJ_P0058997 Ttpal protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058998.1 MGP_CASTEiJ_G0026004.1 mouse_genomes_project 2 167685044 167694937 + MGP_CASTEiJ_P0058998 Ttpal protein_coding protein_coding MGP_CASTEiJ_T0058999.1 MGP_CASTEiJ_G0026004.1 mouse_genomes_project 2 167694585 167698493 + Ttpal protein_coding retained_intron MGP_CASTEiJ_T0003786.1 MGP_CASTEiJ_G0003394.1 mouse_genomes_project 2 17806255 17828742 - Gm17171 antisense antisense MGP_CASTEiJ_T0057610.1 MGP_CASTEiJ_G0025695.1 mouse_genomes_project 2 133132530 133137007 - Slc4a11 protein_coding retained_intron MGP_CASTEiJ_T0057611.1 MGP_CASTEiJ_G0025695.1 mouse_genomes_project 2 133132530 133145968 - MGP_CASTEiJ_P0057611 Slc4a11 protein_coding protein_coding MGP_CASTEiJ_T0057612.1 MGP_CASTEiJ_G0025695.1 mouse_genomes_project 2 133134990 133145918 - Slc4a11 protein_coding retained_intron MGP_CASTEiJ_T0057613.1 MGP_CASTEiJ_G0025695.1 mouse_genomes_project 2 133139173 133140322 - Slc4a11 protein_coding retained_intron MGP_CASTEiJ_T0057614.1 MGP_CASTEiJ_G0025695.1 mouse_genomes_project 2 133139888 133145918 - MGP_CASTEiJ_P0057614 Slc4a11 protein_coding protein_coding MGP_CASTEiJ_T0011169.1 MGP_CASTEiJ_G0009357.1 mouse_genomes_project 2 43858073 43858274 + Vis1 misc_RNA misc_RNA MGP_CASTEiJ_T0053107.1 MGP_CASTEiJ_G0024665.1 mouse_genomes_project 2 23298891 23301987 + MGP_CASTEiJ_P0053107 Obp2b protein_coding protein_coding MGP_CASTEiJ_T0054946.1 MGP_CASTEiJ_G0024979.1 mouse_genomes_project 2 65417729 65491982 - MGP_CASTEiJ_P0054946 Ttc21b protein_coding protein_coding MGP_CASTEiJ_T0054947.1 MGP_CASTEiJ_G0024979.1 mouse_genomes_project 2 65417737 65498143 - MGP_CASTEiJ_P0054947 Ttc21b protein_coding protein_coding MGP_CASTEiJ_T0054948.1 MGP_CASTEiJ_G0024979.1 mouse_genomes_project 2 65455688 65474216 - Ttc21b protein_coding retained_intron MGP_CASTEiJ_T0054949.1 MGP_CASTEiJ_G0024979.1 mouse_genomes_project 2 65470244 65489164 - Ttc21b protein_coding retained_intron MGP_CASTEiJ_T0004036.1 MGP_CASTEiJ_G0003575.1 mouse_genomes_project 2 169091148 169099909 + Zfp335os antisense antisense MGP_CASTEiJ_T0004037.1 MGP_CASTEiJ_G0003575.1 mouse_genomes_project 2 169093883 169099507 + Zfp335os antisense antisense MGP_CASTEiJ_T0003888.1 MGP_CASTEiJ_G0003471.1 mouse_genomes_project 2 73396105 73416671 + Chn1os3 antisense antisense MGP_CASTEiJ_T0003889.1 MGP_CASTEiJ_G0003471.1 mouse_genomes_project 2 73396403 73398661 + Chn1os3 antisense antisense MGP_CASTEiJ_T0055167.1 MGP_CASTEiJ_G0025023.1 mouse_genomes_project 2 71526791 71559202 + MGP_CASTEiJ_P0055167 Pdk1 protein_coding protein_coding MGP_CASTEiJ_T0055168.1 MGP_CASTEiJ_G0025023.1 mouse_genomes_project 2 71526887 71539203 + Pdk1 protein_coding processed_transcript MGP_CASTEiJ_T0055169.1 MGP_CASTEiJ_G0025023.1 mouse_genomes_project 2 71526893 71541626 + Pdk1 protein_coding processed_transcript MGP_CASTEiJ_T0055170.1 MGP_CASTEiJ_G0025023.1 mouse_genomes_project 2 71526913 71557312 + Pdk1 protein_coding processed_transcript MGP_CASTEiJ_T0055171.1 MGP_CASTEiJ_G0025023.1 mouse_genomes_project 2 71527118 71539454 + Pdk1 protein_coding processed_transcript MGP_CASTEiJ_T0055172.1 MGP_CASTEiJ_G0025023.1 mouse_genomes_project 2 71527310 71544280 + Pdk1 protein_coding processed_transcript MGP_CASTEiJ_T0055173.1 MGP_CASTEiJ_G0025023.1 mouse_genomes_project 2 71528674 71538882 + Pdk1 protein_coding processed_transcript MGP_CASTEiJ_T0055174.1 MGP_CASTEiJ_G0025023.1 mouse_genomes_project 2 71542742 71551798 + Pdk1 protein_coding processed_transcript MGP_CASTEiJ_T0055843.1 MGP_CASTEiJ_G0025310.1 mouse_genomes_project 2 90956403 90957330 - MGP_CASTEiJ_P0055843 Olfr32 protein_coding protein_coding MGP_CASTEiJ_T0013296.1 MGP_CASTEiJ_G0011459.1 mouse_genomes_project 2 111253422 111254793 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054799.1 MGP_CASTEiJ_G0024957.1 mouse_genomes_project 2 59294959 59389578 - MGP_CASTEiJ_P0054799 Ly75 protein_coding protein_coding MGP_CASTEiJ_T0054800.1 MGP_CASTEiJ_G0024957.1 mouse_genomes_project 2 59296616 59389506 - MGP_CASTEiJ_P0054800 Ly75 protein_coding protein_coding MGP_CASTEiJ_T0056729.1 MGP_CASTEiJ_G0025507.1 mouse_genomes_project 2 120672695 120692871 + MGP_CASTEiJ_P0056729 Ivd protein_coding protein_coding MGP_CASTEiJ_T0056730.1 MGP_CASTEiJ_G0025507.1 mouse_genomes_project 2 120672769 120679081 + Ivd protein_coding retained_intron MGP_CASTEiJ_T0056731.1 MGP_CASTEiJ_G0025507.1 mouse_genomes_project 2 120680061 120680956 + Ivd protein_coding processed_transcript MGP_CASTEiJ_T0056732.1 MGP_CASTEiJ_G0025507.1 mouse_genomes_project 2 120680981 120685639 + Ivd protein_coding processed_transcript MGP_CASTEiJ_T0056733.1 MGP_CASTEiJ_G0025507.1 mouse_genomes_project 2 120681449 120683445 + Ivd protein_coding retained_intron MGP_CASTEiJ_T0056734.1 MGP_CASTEiJ_G0025507.1 mouse_genomes_project 2 120682990 120690493 + Ivd protein_coding processed_transcript MGP_CASTEiJ_T0056735.1 MGP_CASTEiJ_G0025507.1 mouse_genomes_project 2 120684382 120690928 + Ivd protein_coding processed_transcript MGP_CASTEiJ_T0056736.1 MGP_CASTEiJ_G0025507.1 mouse_genomes_project 2 120685112 120686595 + Ivd protein_coding processed_transcript MGP_CASTEiJ_T0102209.1 MGP_CASTEiJ_G0038934.1 mouse_genomes_project 2 35286837 35287091 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0054889.1 MGP_CASTEiJ_G0024972.1 mouse_genomes_project 2 64059493 64062072 - Grb14 protein_coding processed_transcript MGP_CASTEiJ_T0054890.1 MGP_CASTEiJ_G0024972.1 mouse_genomes_project 2 64059493 64064383 - MGP_CASTEiJ_P0054890 Grb14 protein_coding protein_coding MGP_CASTEiJ_T0054891.1 MGP_CASTEiJ_G0024972.1 mouse_genomes_project 2 64059493 64176620 - MGP_CASTEiJ_P0054891 Grb14 protein_coding protein_coding MGP_CASTEiJ_T0054892.1 MGP_CASTEiJ_G0024972.1 mouse_genomes_project 2 64059493 64064308 - MGP_CASTEiJ_P0054892 Grb14 protein_coding protein_coding MGP_CASTEiJ_T0054893.1 MGP_CASTEiJ_G0024972.1 mouse_genomes_project 2 64075338 64081080 - Grb14 protein_coding processed_transcript MGP_CASTEiJ_T0054894.1 MGP_CASTEiJ_G0024972.1 mouse_genomes_project 2 64076825 64124916 - MGP_CASTEiJ_P0054894 Grb14 protein_coding protein_coding MGP_CASTEiJ_T0054895.1 MGP_CASTEiJ_G0024972.1 mouse_genomes_project 2 64082931 64124893 - Grb14 protein_coding processed_transcript MGP_CASTEiJ_T0054896.1 MGP_CASTEiJ_G0024972.1 mouse_genomes_project 2 64176505 64179685 - Grb14 protein_coding processed_transcript MGP_CASTEiJ_T0053441.1 MGP_CASTEiJ_G0024727.1 mouse_genomes_project 2 26425985 26433599 - MGP_CASTEiJ_P0053441 Spaca9 protein_coding protein_coding MGP_CASTEiJ_T0053442.1 MGP_CASTEiJ_G0024727.1 mouse_genomes_project 2 26425989 26433631 - MGP_CASTEiJ_P0053442 Spaca9 protein_coding protein_coding MGP_CASTEiJ_T0053443.1 MGP_CASTEiJ_G0024727.1 mouse_genomes_project 2 26426917 26433675 - Spaca9 protein_coding processed_transcript MGP_CASTEiJ_T0053444.1 MGP_CASTEiJ_G0024727.1 mouse_genomes_project 2 26427605 26433622 - Spaca9 protein_coding processed_transcript MGP_CASTEiJ_T0001044.1 MGP_CASTEiJ_G0000980.1 mouse_genomes_project 2 96946953 96968965 + TEC TEC MGP_CASTEiJ_T0004012.1 MGP_CASTEiJ_G0003558.1 mouse_genomes_project 2 159986230 159994556 - Gm14252 antisense antisense MGP_CASTEiJ_T0059890.1 MGP_CASTEiJ_G0026209.1 mouse_genomes_project 2 184583737 184589328 - MGP_CASTEiJ_P0059890 Rgs19 protein_coding protein_coding MGP_CASTEiJ_T0059891.1 MGP_CASTEiJ_G0026209.1 mouse_genomes_project 2 184583743 184584825 - MGP_CASTEiJ_P0059891 Rgs19 protein_coding protein_coding MGP_CASTEiJ_T0059892.1 MGP_CASTEiJ_G0026209.1 mouse_genomes_project 2 184583746 184589319 - MGP_CASTEiJ_P0059892 Rgs19 protein_coding protein_coding MGP_CASTEiJ_T0059893.1 MGP_CASTEiJ_G0026209.1 mouse_genomes_project 2 184583828 184587194 - MGP_CASTEiJ_P0059893 Rgs19 protein_coding protein_coding MGP_CASTEiJ_T0059894.1 MGP_CASTEiJ_G0026209.1 mouse_genomes_project 2 184584659 184589030 - Rgs19 protein_coding processed_transcript MGP_CASTEiJ_T0059895.1 MGP_CASTEiJ_G0026209.1 mouse_genomes_project 2 184584744 184589348 - Rgs19 protein_coding processed_transcript MGP_CASTEiJ_T0059896.1 MGP_CASTEiJ_G0026209.1 mouse_genomes_project 2 184584986 184589306 - Rgs19 protein_coding processed_transcript MGP_CASTEiJ_T0055197.1 MGP_CASTEiJ_G0025027.1 mouse_genomes_project 2 72667729 72717240 - MGP_CASTEiJ_P0055197 Sp3 protein_coding protein_coding MGP_CASTEiJ_T0055198.1 MGP_CASTEiJ_G0025027.1 mouse_genomes_project 2 72667950 72717220 - MGP_CASTEiJ_P0055198 Sp3 protein_coding protein_coding MGP_CASTEiJ_T0055199.1 MGP_CASTEiJ_G0025027.1 mouse_genomes_project 2 72667954 72716067 - Sp3 protein_coding processed_transcript MGP_CASTEiJ_T0055200.1 MGP_CASTEiJ_G0025027.1 mouse_genomes_project 2 72669574 72672381 - Sp3 protein_coding processed_transcript MGP_CASTEiJ_T0055201.1 MGP_CASTEiJ_G0025027.1 mouse_genomes_project 2 72678334 72707236 - Sp3 protein_coding processed_transcript MGP_CASTEiJ_T0013115.1 MGP_CASTEiJ_G0011278.1 mouse_genomes_project 2 44418121 44419119 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056467.1 MGP_CASTEiJ_G0025418.1 mouse_genomes_project 2 107296415 107334639 - MGP_CASTEiJ_P0056467 Dnajc24 protein_coding protein_coding MGP_CASTEiJ_T0056468.1 MGP_CASTEiJ_G0025418.1 mouse_genomes_project 2 107298056 107334557 - Dnajc24 protein_coding processed_transcript MGP_CASTEiJ_T0056469.1 MGP_CASTEiJ_G0025418.1 mouse_genomes_project 2 107298284 107334496 - Dnajc24 protein_coding processed_transcript MGP_CASTEiJ_T0056470.1 MGP_CASTEiJ_G0025418.1 mouse_genomes_project 2 107301716 107333371 - Dnajc24 protein_coding processed_transcript MGP_CASTEiJ_T0055531.1 MGP_CASTEiJ_G0025093.1 mouse_genomes_project 2 84922101 84924207 + protein_coding processed_transcript MGP_CASTEiJ_T0055532.1 MGP_CASTEiJ_G0025093.1 mouse_genomes_project 2 84922568 84932587 + MGP_CASTEiJ_P0055532 protein_coding protein_coding MGP_CASTEiJ_T0056758.1 MGP_CASTEiJ_G0025514.1 mouse_genomes_project 2 120955874 120976035 - MGP_CASTEiJ_P0056758 Rmdn3 protein_coding protein_coding MGP_CASTEiJ_T0056759.1 MGP_CASTEiJ_G0025514.1 mouse_genomes_project 2 120957928 120959741 - Rmdn3 protein_coding retained_intron MGP_CASTEiJ_T0056760.1 MGP_CASTEiJ_G0025514.1 mouse_genomes_project 2 120961283 120966450 - Rmdn3 protein_coding retained_intron MGP_CASTEiJ_T0056761.1 MGP_CASTEiJ_G0025514.1 mouse_genomes_project 2 120965170 120966459 - Rmdn3 protein_coding retained_intron MGP_CASTEiJ_T0056762.1 MGP_CASTEiJ_G0025514.1 mouse_genomes_project 2 120973038 120975825 - MGP_CASTEiJ_P0056762 Rmdn3 protein_coding protein_coding MGP_CASTEiJ_T0056763.1 MGP_CASTEiJ_G0025514.1 mouse_genomes_project 2 120973068 120975949 - MGP_CASTEiJ_P0056763 Rmdn3 protein_coding protein_coding MGP_CASTEiJ_T0056764.1 MGP_CASTEiJ_G0025514.1 mouse_genomes_project 2 120973078 120975965 - MGP_CASTEiJ_P0056764 Rmdn3 protein_coding protein_coding MGP_CASTEiJ_T0057221.1 MGP_CASTEiJ_G0025601.1 mouse_genomes_project 2 124853062 124903577 + MGP_CASTEiJ_P0057221 Sqrdl protein_coding protein_coding MGP_CASTEiJ_T0057222.1 MGP_CASTEiJ_G0025601.1 mouse_genomes_project 2 124853071 124902506 + MGP_CASTEiJ_P0057222 Sqrdl protein_coding unknown_likely_coding MGP_CASTEiJ_T0057223.1 MGP_CASTEiJ_G0025601.1 mouse_genomes_project 2 124853214 124876331 + MGP_CASTEiJ_P0057223 Sqrdl protein_coding protein_coding MGP_CASTEiJ_T0057224.1 MGP_CASTEiJ_G0025601.1 mouse_genomes_project 2 124853216 124876338 + MGP_CASTEiJ_P0057224 Sqrdl protein_coding protein_coding MGP_CASTEiJ_T0057225.1 MGP_CASTEiJ_G0025601.1 mouse_genomes_project 2 124853234 124856383 + Sqrdl protein_coding processed_transcript MGP_CASTEiJ_T0057226.1 MGP_CASTEiJ_G0025601.1 mouse_genomes_project 2 124860402 124893148 + Sqrdl protein_coding retained_intron MGP_CASTEiJ_T0057227.1 MGP_CASTEiJ_G0025601.1 mouse_genomes_project 2 124873213 124903561 + MGP_CASTEiJ_P0057227 Sqrdl protein_coding protein_coding MGP_CASTEiJ_T0057228.1 MGP_CASTEiJ_G0025601.1 mouse_genomes_project 2 124876186 124880891 + Sqrdl protein_coding processed_transcript MGP_CASTEiJ_T0057229.1 MGP_CASTEiJ_G0025601.1 mouse_genomes_project 2 124876203 124903346 + MGP_CASTEiJ_P0057229 Sqrdl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057230.1 MGP_CASTEiJ_G0025601.1 mouse_genomes_project 2 124891100 124903567 + MGP_CASTEiJ_P0057230 Sqrdl protein_coding protein_coding MGP_CASTEiJ_T0056046.1 MGP_CASTEiJ_G0025341.1 mouse_genomes_project 2 92595227 92616356 - MGP_CASTEiJ_P0056046 Atg13 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056047.1 MGP_CASTEiJ_G0025341.1 mouse_genomes_project 2 92595230 92636721 - MGP_CASTEiJ_P0056047 Atg13 protein_coding protein_coding MGP_CASTEiJ_T0056048.1 MGP_CASTEiJ_G0025341.1 mouse_genomes_project 2 92595231 92636664 - MGP_CASTEiJ_P0056048 Atg13 protein_coding protein_coding MGP_CASTEiJ_T0056049.1 MGP_CASTEiJ_G0025341.1 mouse_genomes_project 2 92596896 92600265 - Atg13 protein_coding processed_transcript MGP_CASTEiJ_T0056050.1 MGP_CASTEiJ_G0025341.1 mouse_genomes_project 2 92596931 92602743 - Atg13 protein_coding processed_transcript MGP_CASTEiJ_T0056051.1 MGP_CASTEiJ_G0025341.1 mouse_genomes_project 2 92600004 92605792 - Atg13 protein_coding processed_transcript MGP_CASTEiJ_T0056052.1 MGP_CASTEiJ_G0025341.1 mouse_genomes_project 2 92609249 92631959 - Atg13 protein_coding processed_transcript MGP_CASTEiJ_T0007054.1 MGP_CASTEiJ_G0005800.1 mouse_genomes_project 2 74999050 75013002 - Gm13652 lincRNA lincRNA MGP_CASTEiJ_T0055780.1 MGP_CASTEiJ_G0025267.1 mouse_genomes_project 2 89925276 89926212 - MGP_CASTEiJ_P0055780 Olfr1220 protein_coding protein_coding MGP_CASTEiJ_T0056133.1 MGP_CASTEiJ_G0025353.1 mouse_genomes_project 2 93358686 93367716 - MGP_CASTEiJ_P0056133 Mapk8ip1 protein_coding protein_coding MGP_CASTEiJ_T0056134.1 MGP_CASTEiJ_G0025353.1 mouse_genomes_project 2 93358690 93376199 - MGP_CASTEiJ_P0056134 Mapk8ip1 protein_coding protein_coding MGP_CASTEiJ_T0056135.1 MGP_CASTEiJ_G0025353.1 mouse_genomes_project 2 93364886 93367717 - Mapk8ip1 protein_coding processed_transcript MGP_CASTEiJ_T0017134.1 MGP_CASTEiJ_G0014790.1 mouse_genomes_project 2 148759591 148803401 + BC039771 processed_transcript processed_transcript MGP_CASTEiJ_T0017135.1 MGP_CASTEiJ_G0014790.1 mouse_genomes_project 2 148789159 148849382 + BC039771 processed_transcript processed_transcript MGP_CASTEiJ_T0003949.1 MGP_CASTEiJ_G0003512.1 mouse_genomes_project 2 129980679 129989411 + Gm14244 antisense antisense MGP_CASTEiJ_T0059459.1 MGP_CASTEiJ_G0026115.1 mouse_genomes_project 2 176874314 176880453 - MGP_CASTEiJ_P0059459 Cbln4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059460.1 MGP_CASTEiJ_G0026115.1 mouse_genomes_project 2 176874322 176881544 - MGP_CASTEiJ_P0059460 Cbln4 protein_coding protein_coding MGP_CASTEiJ_T0011167.1 MGP_CASTEiJ_G0009355.1 mouse_genomes_project 2 43680145 43680206 + Gm27676 misc_RNA misc_RNA MGP_CASTEiJ_T0013187.1 MGP_CASTEiJ_G0011350.1 mouse_genomes_project 2 73773469 73774470 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013403.1 MGP_CASTEiJ_G0011566.1 mouse_genomes_project 2 156792928 156793210 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056771.1 MGP_CASTEiJ_G0025518.1 mouse_genomes_project 2 121036289 121038212 + Zfyve19 protein_coding processed_transcript MGP_CASTEiJ_T0056772.1 MGP_CASTEiJ_G0025518.1 mouse_genomes_project 2 121036684 121038275 + Zfyve19 protein_coding processed_transcript MGP_CASTEiJ_T0056773.1 MGP_CASTEiJ_G0025518.1 mouse_genomes_project 2 121036704 121039438 + Zfyve19 protein_coding processed_transcript MGP_CASTEiJ_T0056774.1 MGP_CASTEiJ_G0025518.1 mouse_genomes_project 2 121036713 121038816 + Zfyve19 protein_coding retained_intron MGP_CASTEiJ_T0056775.1 MGP_CASTEiJ_G0025518.1 mouse_genomes_project 2 121036802 121045188 + MGP_CASTEiJ_P0056775 Zfyve19 protein_coding protein_coding MGP_CASTEiJ_T0056776.1 MGP_CASTEiJ_G0025518.1 mouse_genomes_project 2 121038510 121043023 + Zfyve19 protein_coding retained_intron MGP_CASTEiJ_T0056777.1 MGP_CASTEiJ_G0025518.1 mouse_genomes_project 2 121039134 121039392 + Zfyve19 protein_coding processed_transcript MGP_CASTEiJ_T0056778.1 MGP_CASTEiJ_G0025518.1 mouse_genomes_project 2 121039313 121043045 + Zfyve19 protein_coding retained_intron MGP_CASTEiJ_T0056779.1 MGP_CASTEiJ_G0025518.1 mouse_genomes_project 2 121042604 121044531 + Zfyve19 protein_coding retained_intron MGP_CASTEiJ_T0056780.1 MGP_CASTEiJ_G0025518.1 mouse_genomes_project 2 121044398 121045183 + Zfyve19 protein_coding retained_intron MGP_CASTEiJ_T0003907.1 MGP_CASTEiJ_G0003484.1 mouse_genomes_project 2 91296819 91302668 + 4933423P22Rik antisense antisense MGP_CASTEiJ_T0003908.1 MGP_CASTEiJ_G0003484.1 mouse_genomes_project 2 91296833 91306015 + 4933423P22Rik antisense antisense MGP_CASTEiJ_T0058498.1 MGP_CASTEiJ_G0025916.1 mouse_genomes_project 2 159160556 159192426 - MGP_CASTEiJ_P0058498 Gss protein_coding protein_coding MGP_CASTEiJ_T0058499.1 MGP_CASTEiJ_G0025916.1 mouse_genomes_project 2 159160564 159192329 - MGP_CASTEiJ_P0058499 Gss protein_coding protein_coding MGP_CASTEiJ_T0058500.1 MGP_CASTEiJ_G0025916.1 mouse_genomes_project 2 159160864 159170356 - MGP_CASTEiJ_P0058500 Gss protein_coding protein_coding MGP_CASTEiJ_T0058501.1 MGP_CASTEiJ_G0025916.1 mouse_genomes_project 2 159161586 159171735 - Gss protein_coding retained_intron MGP_CASTEiJ_T0058504.1 MGP_CASTEiJ_G0025916.1 mouse_genomes_project 2 159170316 159180058 - MGP_CASTEiJ_P0058504 Gss protein_coding protein_coding MGP_CASTEiJ_T0058505.1 MGP_CASTEiJ_G0025916.1 mouse_genomes_project 2 159174136 159192342 - Gss protein_coding processed_transcript MGP_CASTEiJ_T0058506.1 MGP_CASTEiJ_G0025916.1 mouse_genomes_project 2 159174872 159185155 - Gss protein_coding retained_intron MGP_CASTEiJ_T0058507.1 MGP_CASTEiJ_G0025916.1 mouse_genomes_project 2 159174943 159192182 - MGP_CASTEiJ_P0058507 Gss protein_coding protein_coding MGP_CASTEiJ_T0058508.1 MGP_CASTEiJ_G0025916.1 mouse_genomes_project 2 159175655 159180050 - Gss protein_coding processed_transcript MGP_CASTEiJ_T0055242.1 MGP_CASTEiJ_G0025037.1 mouse_genomes_project 2 73617699 73673876 - MGP_CASTEiJ_P0055242 Atf2 protein_coding protein_coding MGP_CASTEiJ_T0055243.1 MGP_CASTEiJ_G0025037.1 mouse_genomes_project 2 73618814 73703496 - MGP_CASTEiJ_P0055243 Atf2 protein_coding protein_coding MGP_CASTEiJ_T0055244.1 MGP_CASTEiJ_G0025037.1 mouse_genomes_project 2 73618814 73649168 - MGP_CASTEiJ_P0055244 Atf2 protein_coding protein_coding MGP_CASTEiJ_T0055245.1 MGP_CASTEiJ_G0025037.1 mouse_genomes_project 2 73618825 73703485 - Atf2 protein_coding processed_transcript MGP_CASTEiJ_T0055246.1 MGP_CASTEiJ_G0025037.1 mouse_genomes_project 2 73621105 73669126 - MGP_CASTEiJ_P0055246 Atf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055247.1 MGP_CASTEiJ_G0025037.1 mouse_genomes_project 2 73630147 73703470 - Atf2 protein_coding processed_transcript MGP_CASTEiJ_T0055248.1 MGP_CASTEiJ_G0025037.1 mouse_genomes_project 2 73633551 73703387 - MGP_CASTEiJ_P0055248 Atf2 protein_coding protein_coding MGP_CASTEiJ_T0055249.1 MGP_CASTEiJ_G0025037.1 mouse_genomes_project 2 73648537 73703485 - Atf2 protein_coding processed_transcript MGP_CASTEiJ_T0055250.1 MGP_CASTEiJ_G0025037.1 mouse_genomes_project 2 73649101 73703450 - MGP_CASTEiJ_P0055250 Atf2 protein_coding protein_coding MGP_CASTEiJ_T0055251.1 MGP_CASTEiJ_G0025037.1 mouse_genomes_project 2 73649102 73703410 - MGP_CASTEiJ_P0055251 Atf2 protein_coding protein_coding MGP_CASTEiJ_T0055252.1 MGP_CASTEiJ_G0025037.1 mouse_genomes_project 2 73649396 73654334 - Atf2 protein_coding processed_transcript MGP_CASTEiJ_T0055253.1 MGP_CASTEiJ_G0025037.1 mouse_genomes_project 2 73668763 73703451 - Atf2 protein_coding processed_transcript MGP_CASTEiJ_T0055254.1 MGP_CASTEiJ_G0025037.1 mouse_genomes_project 2 73668856 73703485 - Atf2 protein_coding processed_transcript MGP_CASTEiJ_T0055255.1 MGP_CASTEiJ_G0025037.1 mouse_genomes_project 2 73682306 73703407 - Atf2 protein_coding processed_transcript MGP_CASTEiJ_T0011183.1 MGP_CASTEiJ_G0009371.1 mouse_genomes_project 2 129761315 129761607 - Gm22613 misc_RNA misc_RNA MGP_CASTEiJ_T0056765.1 MGP_CASTEiJ_G0025515.1 mouse_genomes_project 2 120990188 120994507 + MGP_CASTEiJ_P0056765 Gchfr protein_coding protein_coding MGP_CASTEiJ_T0013186.1 MGP_CASTEiJ_G0011349.1 mouse_genomes_project 2 73611485 73611749 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010110.1 MGP_CASTEiJ_G0008298.1 mouse_genomes_project 2 27642065 27642162 - Mir219a-2 miRNA miRNA MGP_CASTEiJ_T0058197.1 MGP_CASTEiJ_G0025830.1 mouse_genomes_project 2 155394498 155398339 + Srxn1 protein_coding processed_transcript MGP_CASTEiJ_T0058198.1 MGP_CASTEiJ_G0025830.1 mouse_genomes_project 2 155394498 155398228 + Srxn1 protein_coding processed_transcript MGP_CASTEiJ_T0058199.1 MGP_CASTEiJ_G0025830.1 mouse_genomes_project 2 155394506 155400393 + MGP_CASTEiJ_P0058199 Srxn1 protein_coding protein_coding MGP_CASTEiJ_T0017033.1 MGP_CASTEiJ_G0014736.1 mouse_genomes_project 2 58325540 58329720 - 5330411J11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017034.1 MGP_CASTEiJ_G0014736.1 mouse_genomes_project 2 58326832 58330503 - 5330411J11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0053524.1 MGP_CASTEiJ_G0024743.1 mouse_genomes_project 2 27614629 27639579 + Urm1 protein_coding processed_transcript MGP_CASTEiJ_T0053525.1 MGP_CASTEiJ_G0024743.1 mouse_genomes_project 2 27621763 27639808 + Urm1 protein_coding processed_transcript MGP_CASTEiJ_T0053526.1 MGP_CASTEiJ_G0024743.1 mouse_genomes_project 2 27621763 27641436 + MGP_CASTEiJ_P0053526 Urm1 protein_coding protein_coding MGP_CASTEiJ_T0053527.1 MGP_CASTEiJ_G0024743.1 mouse_genomes_project 2 27621782 27639855 + Urm1 protein_coding processed_transcript MGP_CASTEiJ_T0053528.1 MGP_CASTEiJ_G0024743.1 mouse_genomes_project 2 27621816 27628045 + Urm1 protein_coding retained_intron MGP_CASTEiJ_T0053529.1 MGP_CASTEiJ_G0024743.1 mouse_genomes_project 2 27638081 27640498 + Urm1 protein_coding retained_intron MGP_CASTEiJ_T0057371.1 MGP_CASTEiJ_G0025632.1 mouse_genomes_project 2 129491856 129508442 + Snrnp200 protein_coding retained_intron MGP_CASTEiJ_T0057372.1 MGP_CASTEiJ_G0025632.1 mouse_genomes_project 2 129491869 129527776 + MGP_CASTEiJ_P0057372 Snrnp200 protein_coding protein_coding MGP_CASTEiJ_T0057373.1 MGP_CASTEiJ_G0025632.1 mouse_genomes_project 2 129491921 129527782 + MGP_CASTEiJ_P0057373 Snrnp200 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057374.1 MGP_CASTEiJ_G0025632.1 mouse_genomes_project 2 129507446 129510882 + Snrnp200 protein_coding processed_transcript MGP_CASTEiJ_T0057375.1 MGP_CASTEiJ_G0025632.1 mouse_genomes_project 2 129522757 129525626 + Snrnp200 protein_coding retained_intron MGP_CASTEiJ_T0057376.1 MGP_CASTEiJ_G0025632.1 mouse_genomes_project 2 129525391 129527285 + Snrnp200 protein_coding retained_intron MGP_CASTEiJ_T0055339.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76645849 76928681 - MGP_CASTEiJ_P0055339 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055340.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76645849 76928681 - MGP_CASTEiJ_P0055340 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055341.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76645853 76928773 - MGP_CASTEiJ_P0055341 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055342.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76646900 76928731 - MGP_CASTEiJ_P0055342 Ttn protein_coding unknown_likely_coding MGP_CASTEiJ_T0055343.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76758771 76884088 - MGP_CASTEiJ_P0055343 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055344.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76759441 76840657 - MGP_CASTEiJ_P0055344 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055345.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76759475 76817749 - MGP_CASTEiJ_P0055345 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055346.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76759476 76817749 - MGP_CASTEiJ_P0055346 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055347.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76759476 76817749 - MGP_CASTEiJ_P0055347 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055348.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76759476 76817749 - MGP_CASTEiJ_P0055348 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055349.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76759494 76817749 - MGP_CASTEiJ_P0055349 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055350.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76766255 76771673 - MGP_CASTEiJ_P0055350 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055351.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76767655 76788892 - MGP_CASTEiJ_P0055351 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055352.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76777696 76778631 - MGP_CASTEiJ_P0055352 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055353.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76778482 76780624 - MGP_CASTEiJ_P0055353 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055354.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76783488 76784336 - MGP_CASTEiJ_P0055354 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055355.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76783488 76786641 - MGP_CASTEiJ_P0055355 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055356.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76791985 76794918 - MGP_CASTEiJ_P0055356 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055357.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76797056 76821327 - MGP_CASTEiJ_P0055357 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055358.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76839482 76840239 - Ttn protein_coding processed_transcript MGP_CASTEiJ_T0055359.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76865825 76928681 - MGP_CASTEiJ_P0055359 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055360.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76887678 76890278 - Ttn protein_coding retained_intron MGP_CASTEiJ_T0055361.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76911148 76928773 - Ttn protein_coding retained_intron MGP_CASTEiJ_T0055362.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76911955 76928773 - MGP_CASTEiJ_P0055362 Ttn protein_coding protein_coding MGP_CASTEiJ_T0055363.1 MGP_CASTEiJ_G0025064.1 mouse_genomes_project 2 76919945 76928773 - Ttn protein_coding retained_intron MGP_CASTEiJ_T0055561.1 MGP_CASTEiJ_G0025102.1 mouse_genomes_project 2 85080426 85089567 + MGP_CASTEiJ_P0055561 protein_coding protein_coding MGP_CASTEiJ_T0055562.1 MGP_CASTEiJ_G0025102.1 mouse_genomes_project 2 85080501 85093247 + MGP_CASTEiJ_P0055562 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055563.1 MGP_CASTEiJ_G0025102.1 mouse_genomes_project 2 85085878 85095331 + protein_coding processed_transcript MGP_CASTEiJ_T0055564.1 MGP_CASTEiJ_G0025102.1 mouse_genomes_project 2 85089404 85093325 + protein_coding retained_intron MGP_CASTEiJ_T0057570.1 MGP_CASTEiJ_G0025684.1 mouse_genomes_project 2 132846328 132853260 - Pced1a protein_coding processed_transcript MGP_CASTEiJ_T0057571.1 MGP_CASTEiJ_G0025684.1 mouse_genomes_project 2 132846764 132853290 - MGP_CASTEiJ_P0057571 Pced1a protein_coding protein_coding MGP_CASTEiJ_T0057572.1 MGP_CASTEiJ_G0025684.1 mouse_genomes_project 2 132847282 132853293 - Pced1a protein_coding processed_transcript MGP_CASTEiJ_T0057573.1 MGP_CASTEiJ_G0025684.1 mouse_genomes_project 2 132847306 132853278 - Pced1a protein_coding retained_intron MGP_CASTEiJ_T0057574.1 MGP_CASTEiJ_G0025684.1 mouse_genomes_project 2 132848040 132853699 - MGP_CASTEiJ_P0057574 Pced1a protein_coding protein_coding MGP_CASTEiJ_T0057575.1 MGP_CASTEiJ_G0025684.1 mouse_genomes_project 2 132848051 132853713 - Pced1a protein_coding retained_intron MGP_CASTEiJ_T0057576.1 MGP_CASTEiJ_G0025684.1 mouse_genomes_project 2 132850898 132853322 - Pced1a protein_coding retained_intron MGP_CASTEiJ_T0055663.1 MGP_CASTEiJ_G0025165.1 mouse_genomes_project 2 86987024 86987972 - MGP_CASTEiJ_P0055663 Olfr1079 protein_coding protein_coding MGP_CASTEiJ_T0055664.1 MGP_CASTEiJ_G0025165.1 mouse_genomes_project 2 86987024 86991584 - MGP_CASTEiJ_P0055664 Olfr1079 protein_coding protein_coding MGP_CASTEiJ_T0007252.1 MGP_CASTEiJ_G0005964.1 mouse_genomes_project 2 183688455 183690742 + lincRNA lincRNA MGP_CASTEiJ_T0052158.1 MGP_CASTEiJ_G0024503.1 mouse_genomes_project 2 381536 391473 - MGP_CASTEiJ_P0052158 Meig1 protein_coding protein_coding MGP_CASTEiJ_T0052159.1 MGP_CASTEiJ_G0024503.1 mouse_genomes_project 2 381536 395089 - MGP_CASTEiJ_P0052159 Meig1 protein_coding protein_coding MGP_CASTEiJ_T0052160.1 MGP_CASTEiJ_G0024503.1 mouse_genomes_project 2 381539 391495 - MGP_CASTEiJ_P0052160 Meig1 protein_coding protein_coding MGP_CASTEiJ_T0052161.1 MGP_CASTEiJ_G0024503.1 mouse_genomes_project 2 381540 391583 - MGP_CASTEiJ_P0052161 Meig1 protein_coding protein_coding MGP_CASTEiJ_T0052162.1 MGP_CASTEiJ_G0024503.1 mouse_genomes_project 2 381603 391034 - MGP_CASTEiJ_P0052162 Meig1 protein_coding protein_coding MGP_CASTEiJ_T0052163.1 MGP_CASTEiJ_G0024503.1 mouse_genomes_project 2 381760 395035 - MGP_CASTEiJ_P0052163 Meig1 protein_coding protein_coding MGP_CASTEiJ_T0052352.1 MGP_CASTEiJ_G0024535.1 mouse_genomes_project 2 7320388 7356307 - MGP_CASTEiJ_P0052352 Itih2 protein_coding protein_coding MGP_CASTEiJ_T0052353.1 MGP_CASTEiJ_G0024535.1 mouse_genomes_project 2 7335324 7356717 - MGP_CASTEiJ_P0052353 Itih2 protein_coding protein_coding MGP_CASTEiJ_T0052354.1 MGP_CASTEiJ_G0024535.1 mouse_genomes_project 2 7351947 7357002 - MGP_CASTEiJ_P0052354 Itih2 protein_coding protein_coding MGP_CASTEiJ_T0100873.1 MGP_CASTEiJ_G0037786.1 mouse_genomes_project 2 45224410 45224527 - Gm25264 snoRNA snoRNA MGP_CASTEiJ_T0053278.1 MGP_CASTEiJ_G0024695.1 mouse_genomes_project 2 24529173 24534596 - MGP_CASTEiJ_P0053278 Med22 protein_coding protein_coding MGP_CASTEiJ_T0053279.1 MGP_CASTEiJ_G0024695.1 mouse_genomes_project 2 24529500 24534488 - MGP_CASTEiJ_P0053279 Med22 protein_coding protein_coding MGP_CASTEiJ_T0053280.1 MGP_CASTEiJ_G0024695.1 mouse_genomes_project 2 24532030 24534497 - MGP_CASTEiJ_P0053280 Med22 protein_coding protein_coding MGP_CASTEiJ_T0055659.1 MGP_CASTEiJ_G0025161.1 mouse_genomes_project 2 86896557 86897499 - MGP_CASTEiJ_P0055659 Olfr1066 protein_coding protein_coding MGP_CASTEiJ_T0013303.1 MGP_CASTEiJ_G0011466.1 mouse_genomes_project 2 113266473 113267204 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056058.1 MGP_CASTEiJ_G0025343.1 mouse_genomes_project 2 92660814 92857897 + MGP_CASTEiJ_P0056058 Ambra1 protein_coding protein_coding MGP_CASTEiJ_T0056059.1 MGP_CASTEiJ_G0025343.1 mouse_genomes_project 2 92660818 92857896 + MGP_CASTEiJ_P0056059 Ambra1 protein_coding protein_coding MGP_CASTEiJ_T0056060.1 MGP_CASTEiJ_G0025343.1 mouse_genomes_project 2 92660862 92746426 + Ambra1 protein_coding processed_transcript MGP_CASTEiJ_T0056061.1 MGP_CASTEiJ_G0025343.1 mouse_genomes_project 2 92660862 92746426 + Ambra1 protein_coding processed_transcript MGP_CASTEiJ_T0056062.1 MGP_CASTEiJ_G0025343.1 mouse_genomes_project 2 92660864 92857896 + MGP_CASTEiJ_P0056062 Ambra1 protein_coding protein_coding MGP_CASTEiJ_T0056063.1 MGP_CASTEiJ_G0025343.1 mouse_genomes_project 2 92660905 92857897 + MGP_CASTEiJ_P0056063 Ambra1 protein_coding protein_coding MGP_CASTEiJ_T0056064.1 MGP_CASTEiJ_G0025343.1 mouse_genomes_project 2 92700865 92857897 + MGP_CASTEiJ_P0056064 Ambra1 protein_coding protein_coding MGP_CASTEiJ_T0056065.1 MGP_CASTEiJ_G0025343.1 mouse_genomes_project 2 92707869 92762741 + Ambra1 protein_coding processed_transcript MGP_CASTEiJ_T0056066.1 MGP_CASTEiJ_G0025343.1 mouse_genomes_project 2 92747135 92763573 + Ambra1 protein_coding processed_transcript MGP_CASTEiJ_T0055794.1 MGP_CASTEiJ_G0025279.1 mouse_genomes_project 2 90149629 90150547 - MGP_CASTEiJ_P0055794 Olfr1233 protein_coding protein_coding MGP_CASTEiJ_T0053265.1 MGP_CASTEiJ_G0024691.1 mouse_genomes_project 2 24253070 24260927 + MGP_CASTEiJ_P0053265 Fam69b protein_coding protein_coding MGP_CASTEiJ_T0053266.1 MGP_CASTEiJ_G0024691.1 mouse_genomes_project 2 24253107 24257446 + Fam69b protein_coding processed_transcript MGP_CASTEiJ_T0053267.1 MGP_CASTEiJ_G0024691.1 mouse_genomes_project 2 24258629 24259450 + Fam69b protein_coding processed_transcript MGP_CASTEiJ_T0056378.1 MGP_CASTEiJ_G0025398.1 mouse_genomes_project 2 105272741 105315903 + MGP_CASTEiJ_P0056378 Cd59b protein_coding protein_coding MGP_CASTEiJ_T0055770.1 MGP_CASTEiJ_G0025259.1 mouse_genomes_project 2 89785999 89794407 - MGP_CASTEiJ_P0055770 protein_coding protein_coding MGP_CASTEiJ_T0055772.1 MGP_CASTEiJ_G0025259.1 mouse_genomes_project 2 89786498 89794377 - protein_coding processed_transcript MGP_CASTEiJ_T0055773.1 MGP_CASTEiJ_G0025259.1 mouse_genomes_project 2 89786715 89794401 - protein_coding processed_transcript MGP_CASTEiJ_T0007101.1 MGP_CASTEiJ_G0005838.1 mouse_genomes_project 2 107927159 107933031 - Gm14014 lincRNA lincRNA MGP_CASTEiJ_T0057922.1 MGP_CASTEiJ_G0025758.1 mouse_genomes_project 2 146930681 146962284 + MGP_CASTEiJ_P0057922 Dstn protein_coding protein_coding MGP_CASTEiJ_T0059341.1 MGP_CASTEiJ_G0026088.1 mouse_genomes_project 2 171808131 171869069 + MGP_CASTEiJ_P0059341 Slc9a8 protein_coding protein_coding MGP_CASTEiJ_T0059342.1 MGP_CASTEiJ_G0026088.1 mouse_genomes_project 2 171808140 171869067 + MGP_CASTEiJ_P0059342 Slc9a8 protein_coding protein_coding MGP_CASTEiJ_T0059343.1 MGP_CASTEiJ_G0026088.1 mouse_genomes_project 2 171808140 171866704 + MGP_CASTEiJ_P0059343 Slc9a8 protein_coding protein_coding MGP_CASTEiJ_T0059344.1 MGP_CASTEiJ_G0026088.1 mouse_genomes_project 2 171808142 171812555 + Slc9a8 protein_coding retained_intron MGP_CASTEiJ_T0059345.1 MGP_CASTEiJ_G0026088.1 mouse_genomes_project 2 171808149 171836113 + Slc9a8 protein_coding retained_intron MGP_CASTEiJ_T0059346.1 MGP_CASTEiJ_G0026088.1 mouse_genomes_project 2 171808151 171869068 + Slc9a8 protein_coding processed_transcript MGP_CASTEiJ_T0059347.1 MGP_CASTEiJ_G0026088.1 mouse_genomes_project 2 171808156 171823436 + Slc9a8 protein_coding retained_intron MGP_CASTEiJ_T0059348.1 MGP_CASTEiJ_G0026088.1 mouse_genomes_project 2 171808157 171859674 + Slc9a8 protein_coding processed_transcript MGP_CASTEiJ_T0059349.1 MGP_CASTEiJ_G0026088.1 mouse_genomes_project 2 171808161 171869068 + Slc9a8 protein_coding processed_transcript MGP_CASTEiJ_T0059350.1 MGP_CASTEiJ_G0026088.1 mouse_genomes_project 2 171810538 171859701 + Slc9a8 protein_coding processed_transcript MGP_CASTEiJ_T0059351.1 MGP_CASTEiJ_G0026088.1 mouse_genomes_project 2 171840053 171859699 + Slc9a8 protein_coding processed_transcript MGP_CASTEiJ_T0059352.1 MGP_CASTEiJ_G0026088.1 mouse_genomes_project 2 171840142 171861053 + Slc9a8 protein_coding processed_transcript MGP_CASTEiJ_T0059353.1 MGP_CASTEiJ_G0026088.1 mouse_genomes_project 2 171840242 171869068 + Slc9a8 protein_coding processed_transcript MGP_CASTEiJ_T0055607.1 MGP_CASTEiJ_G0025113.1 mouse_genomes_project 2 85431781 85435478 + MGP_CASTEiJ_P0055607 Aplnr protein_coding protein_coding MGP_CASTEiJ_T0055608.1 MGP_CASTEiJ_G0025113.1 mouse_genomes_project 2 85432948 85435476 + MGP_CASTEiJ_P0055608 Aplnr protein_coding protein_coding MGP_CASTEiJ_T0052925.1 MGP_CASTEiJ_G0024630.1 mouse_genomes_project 2 22794164 22801421 + MGP_CASTEiJ_P0052925 Tprn protein_coding protein_coding MGP_CASTEiJ_T0052926.1 MGP_CASTEiJ_G0024630.1 mouse_genomes_project 2 22795787 22801092 + Tprn protein_coding processed_transcript MGP_CASTEiJ_T0052927.1 MGP_CASTEiJ_G0024630.1 mouse_genomes_project 2 22799108 22800707 + Tprn protein_coding processed_transcript MGP_CASTEiJ_T0052928.1 MGP_CASTEiJ_G0024630.1 mouse_genomes_project 2 22800471 22801051 + Tprn protein_coding processed_transcript MGP_CASTEiJ_T0017085.1 MGP_CASTEiJ_G0014769.1 mouse_genomes_project 2 115587299 115645133 + A530058N18Rik processed_transcript antisense MGP_CASTEiJ_T0017086.1 MGP_CASTEiJ_G0014769.1 mouse_genomes_project 2 115587303 115638975 + A530058N18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0056541.1 MGP_CASTEiJ_G0025443.1 mouse_genomes_project 2 112830890 112833223 + MGP_CASTEiJ_P0056541 protein_coding protein_coding MGP_CASTEiJ_T0058850.1 MGP_CASTEiJ_G0025973.1 mouse_genomes_project 2 162243325 162331617 + MGP_CASTEiJ_P0058850 Ralgapb protein_coding protein_coding MGP_CASTEiJ_T0058851.1 MGP_CASTEiJ_G0025973.1 mouse_genomes_project 2 162243330 162331617 + MGP_CASTEiJ_P0058851 Ralgapb protein_coding protein_coding MGP_CASTEiJ_T0058852.1 MGP_CASTEiJ_G0025973.1 mouse_genomes_project 2 162243353 162261518 + Ralgapb protein_coding retained_intron MGP_CASTEiJ_T0058853.1 MGP_CASTEiJ_G0025973.1 mouse_genomes_project 2 162243356 162273078 + Ralgapb protein_coding retained_intron MGP_CASTEiJ_T0058854.1 MGP_CASTEiJ_G0025973.1 mouse_genomes_project 2 162243359 162276740 + Ralgapb protein_coding processed_transcript MGP_CASTEiJ_T0058855.1 MGP_CASTEiJ_G0025973.1 mouse_genomes_project 2 162243428 162330010 + MGP_CASTEiJ_P0058855 Ralgapb protein_coding protein_coding MGP_CASTEiJ_T0058856.1 MGP_CASTEiJ_G0025973.1 mouse_genomes_project 2 162243579 162254366 + MGP_CASTEiJ_P0058856 Ralgapb protein_coding protein_coding MGP_CASTEiJ_T0058857.1 MGP_CASTEiJ_G0025973.1 mouse_genomes_project 2 162269984 162331617 + MGP_CASTEiJ_P0058857 Ralgapb protein_coding protein_coding MGP_CASTEiJ_T0058858.1 MGP_CASTEiJ_G0025973.1 mouse_genomes_project 2 162299532 162306852 + Ralgapb protein_coding retained_intron MGP_CASTEiJ_T0058859.1 MGP_CASTEiJ_G0025973.1 mouse_genomes_project 2 162311201 162318179 + Ralgapb protein_coding processed_transcript MGP_CASTEiJ_T0010087.1 MGP_CASTEiJ_G0008275.1 mouse_genomes_project 2 7755037 7755135 + Mir297a-4 miRNA miRNA MGP_CASTEiJ_T0007190.1 MGP_CASTEiJ_G0005909.1 mouse_genomes_project 2 163807006 163843228 - Gm14223 lincRNA lincRNA MGP_CASTEiJ_T0099664.1 MGP_CASTEiJ_G0036577.1 mouse_genomes_project 2 138755939 138756040 - Gm26227 snRNA snRNA MGP_CASTEiJ_T0054092.1 MGP_CASTEiJ_G0024822.1 mouse_genomes_project 2 30953175 31005401 + MGP_CASTEiJ_P0054092 Fam129b protein_coding protein_coding MGP_CASTEiJ_T0054093.1 MGP_CASTEiJ_G0024822.1 mouse_genomes_project 2 30953361 31005405 + MGP_CASTEiJ_P0054093 Fam129b protein_coding unknown_likely_coding MGP_CASTEiJ_T0054094.1 MGP_CASTEiJ_G0024822.1 mouse_genomes_project 2 30973498 30987831 + MGP_CASTEiJ_P0054094 Fam129b protein_coding protein_coding MGP_CASTEiJ_T0054095.1 MGP_CASTEiJ_G0024822.1 mouse_genomes_project 2 30988781 30990461 + Fam129b protein_coding retained_intron MGP_CASTEiJ_T0054096.1 MGP_CASTEiJ_G0024822.1 mouse_genomes_project 2 30994856 31001171 + Fam129b protein_coding processed_transcript MGP_CASTEiJ_T0054097.1 MGP_CASTEiJ_G0024822.1 mouse_genomes_project 2 30998788 31002254 + Fam129b protein_coding processed_transcript MGP_CASTEiJ_T0054098.1 MGP_CASTEiJ_G0024822.1 mouse_genomes_project 2 31001788 31003786 + Fam129b protein_coding processed_transcript MGP_CASTEiJ_T0007219.1 MGP_CASTEiJ_G0005934.1 mouse_genomes_project 2 172288033 172291972 + Gm14319 lincRNA lincRNA MGP_CASTEiJ_T0098577.1 MGP_CASTEiJ_G0035508.1 mouse_genomes_project 2 120138093 120138187 + Gm22651 rRNA rRNA MGP_CASTEiJ_T0017137.1 MGP_CASTEiJ_G0014792.1 mouse_genomes_project 2 153875871 153877310 + E130215H24Rik processed_transcript processed_transcript MGP_CASTEiJ_T0059910.1 MGP_CASTEiJ_G0026212.1 mouse_genomes_project 2 184663220 184730014 + MGP_CASTEiJ_P0059910 Myt1 protein_coding protein_coding MGP_CASTEiJ_T0059911.1 MGP_CASTEiJ_G0026212.1 mouse_genomes_project 2 184663284 184732411 + MGP_CASTEiJ_P0059911 Myt1 protein_coding protein_coding MGP_CASTEiJ_T0059912.1 MGP_CASTEiJ_G0026212.1 mouse_genomes_project 2 184666928 184697781 + Myt1 protein_coding processed_transcript MGP_CASTEiJ_T0059913.1 MGP_CASTEiJ_G0026212.1 mouse_genomes_project 2 184667002 184732411 + MGP_CASTEiJ_P0059913 Myt1 protein_coding protein_coding MGP_CASTEiJ_T0059914.1 MGP_CASTEiJ_G0026212.1 mouse_genomes_project 2 184667202 184706718 + MGP_CASTEiJ_P0059914 Myt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059915.1 MGP_CASTEiJ_G0026212.1 mouse_genomes_project 2 184684545 184717309 + MGP_CASTEiJ_P0059915 Myt1 protein_coding protein_coding MGP_CASTEiJ_T0059916.1 MGP_CASTEiJ_G0026212.1 mouse_genomes_project 2 184698195 184729949 + Myt1 protein_coding retained_intron MGP_CASTEiJ_T0059917.1 MGP_CASTEiJ_G0026212.1 mouse_genomes_project 2 184699487 184708248 + Myt1 protein_coding processed_transcript MGP_CASTEiJ_T0059918.1 MGP_CASTEiJ_G0026212.1 mouse_genomes_project 2 184712906 184721805 + MGP_CASTEiJ_P0059918 Myt1 protein_coding protein_coding MGP_CASTEiJ_T0059919.1 MGP_CASTEiJ_G0026212.1 mouse_genomes_project 2 184721264 184723703 + Myt1 protein_coding retained_intron MGP_CASTEiJ_T0010114.1 MGP_CASTEiJ_G0008302.1 mouse_genomes_project 2 28612893 28612977 + Mir3089 miRNA miRNA MGP_CASTEiJ_T0056136.1 MGP_CASTEiJ_G0025354.1 mouse_genomes_project 2 93380006 93411022 - MGP_CASTEiJ_P0056136 Cry2 protein_coding protein_coding MGP_CASTEiJ_T0056137.1 MGP_CASTEiJ_G0025354.1 mouse_genomes_project 2 93387805 93411015 - MGP_CASTEiJ_P0056137 Cry2 protein_coding protein_coding MGP_CASTEiJ_T0056138.1 MGP_CASTEiJ_G0025354.1 mouse_genomes_project 2 93401708 93411015 - Cry2 protein_coding processed_transcript MGP_CASTEiJ_T0056139.1 MGP_CASTEiJ_G0025354.1 mouse_genomes_project 2 93403456 93409372 - Cry2 protein_coding processed_transcript MGP_CASTEiJ_T0052721.1 MGP_CASTEiJ_G0024592.1 mouse_genomes_project 2 20517597 20560537 + MGP_CASTEiJ_P0052721 Acbd5 protein_coding protein_coding MGP_CASTEiJ_T0052722.1 MGP_CASTEiJ_G0024592.1 mouse_genomes_project 2 20517630 20560537 + MGP_CASTEiJ_P0052722 Acbd5 protein_coding protein_coding MGP_CASTEiJ_T0052723.1 MGP_CASTEiJ_G0024592.1 mouse_genomes_project 2 20517664 20525387 + MGP_CASTEiJ_P0052723 Acbd5 protein_coding protein_coding MGP_CASTEiJ_T0052724.1 MGP_CASTEiJ_G0024592.1 mouse_genomes_project 2 20518497 20560535 + MGP_CASTEiJ_P0052724 Acbd5 protein_coding protein_coding MGP_CASTEiJ_T0052725.1 MGP_CASTEiJ_G0024592.1 mouse_genomes_project 2 20518501 20560537 + MGP_CASTEiJ_P0052725 Acbd5 protein_coding protein_coding MGP_CASTEiJ_T0052726.1 MGP_CASTEiJ_G0024592.1 mouse_genomes_project 2 20518559 20561596 + MGP_CASTEiJ_P0052726 Acbd5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052727.1 MGP_CASTEiJ_G0024592.1 mouse_genomes_project 2 20518756 20537375 + MGP_CASTEiJ_P0052727 Acbd5 protein_coding protein_coding MGP_CASTEiJ_T0013054.1 MGP_CASTEiJ_G0011217.1 mouse_genomes_project 2 20131419 20131775 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059550.1 MGP_CASTEiJ_G0026142.1 mouse_genomes_project 2 179386335 179404301 - MGP_CASTEiJ_P0059550 Gm20721 protein_coding protein_coding MGP_CASTEiJ_T0058689.1 MGP_CASTEiJ_G0025943.1 mouse_genomes_project 2 160077704 160211317 + MGP_CASTEiJ_P0058689 Epb41l1 protein_coding protein_coding MGP_CASTEiJ_T0058690.1 MGP_CASTEiJ_G0025943.1 mouse_genomes_project 2 160077843 160211317 + MGP_CASTEiJ_P0058690 Epb41l1 protein_coding protein_coding MGP_CASTEiJ_T0058691.1 MGP_CASTEiJ_G0025943.1 mouse_genomes_project 2 160077847 160166357 + Epb41l1 protein_coding processed_transcript MGP_CASTEiJ_T0058692.1 MGP_CASTEiJ_G0025943.1 mouse_genomes_project 2 160077879 160188902 + MGP_CASTEiJ_P0058692 Epb41l1 protein_coding protein_coding MGP_CASTEiJ_T0058693.1 MGP_CASTEiJ_G0025943.1 mouse_genomes_project 2 160077896 160211317 + MGP_CASTEiJ_P0058693 Epb41l1 protein_coding protein_coding MGP_CASTEiJ_T0058694.1 MGP_CASTEiJ_G0025943.1 mouse_genomes_project 2 160077907 160211317 + MGP_CASTEiJ_P0058694 Epb41l1 protein_coding protein_coding MGP_CASTEiJ_T0058695.1 MGP_CASTEiJ_G0025943.1 mouse_genomes_project 2 160135954 160163601 + Epb41l1 protein_coding processed_transcript MGP_CASTEiJ_T0058696.1 MGP_CASTEiJ_G0025943.1 mouse_genomes_project 2 160136241 160211317 + MGP_CASTEiJ_P0058696 Epb41l1 protein_coding protein_coding MGP_CASTEiJ_T0058697.1 MGP_CASTEiJ_G0025943.1 mouse_genomes_project 2 160136287 160211317 + MGP_CASTEiJ_P0058697 Epb41l1 protein_coding protein_coding MGP_CASTEiJ_T0058698.1 MGP_CASTEiJ_G0025943.1 mouse_genomes_project 2 160157827 160211317 + MGP_CASTEiJ_P0058698 Epb41l1 protein_coding protein_coding MGP_CASTEiJ_T0058699.1 MGP_CASTEiJ_G0025943.1 mouse_genomes_project 2 160157842 160211312 + MGP_CASTEiJ_P0058699 Epb41l1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058700.1 MGP_CASTEiJ_G0025943.1 mouse_genomes_project 2 160170322 160178085 + Epb41l1 protein_coding processed_transcript MGP_CASTEiJ_T0058701.1 MGP_CASTEiJ_G0025943.1 mouse_genomes_project 2 160201650 160208131 + Epb41l1 protein_coding retained_intron MGP_CASTEiJ_T0058702.1 MGP_CASTEiJ_G0025943.1 mouse_genomes_project 2 160205499 160208467 + Epb41l1 protein_coding processed_transcript MGP_CASTEiJ_T0003787.1 MGP_CASTEiJ_G0003395.1 mouse_genomes_project 2 17923755 17924876 - antisense antisense MGP_CASTEiJ_T0003758.1 MGP_CASTEiJ_G0003372.1 mouse_genomes_project 2 445846 451762 + Gm13184 antisense antisense MGP_CASTEiJ_T0054062.1 MGP_CASTEiJ_G0024816.1 mouse_genomes_project 2 30794777 30797004 - 6330409D20Rik protein_coding processed_transcript MGP_CASTEiJ_T0054063.1 MGP_CASTEiJ_G0024816.1 mouse_genomes_project 2 30794777 30802884 - MGP_CASTEiJ_P0054063 6330409D20Rik protein_coding protein_coding MGP_CASTEiJ_T0059648.1 MGP_CASTEiJ_G0026166.1 mouse_genomes_project 2 183056165 183071537 - MGP_CASTEiJ_P0059648 Cables2 protein_coding protein_coding MGP_CASTEiJ_T0059649.1 MGP_CASTEiJ_G0026166.1 mouse_genomes_project 2 183056168 183071504 - Cables2 protein_coding retained_intron MGP_CASTEiJ_T0059650.1 MGP_CASTEiJ_G0026166.1 mouse_genomes_project 2 183058041 183059404 - Cables2 protein_coding retained_intron MGP_CASTEiJ_T0059651.1 MGP_CASTEiJ_G0026166.1 mouse_genomes_project 2 183059769 183071537 - Cables2 protein_coding retained_intron MGP_CASTEiJ_T0059652.1 MGP_CASTEiJ_G0026166.1 mouse_genomes_project 2 183060492 183071487 - Cables2 protein_coding retained_intron MGP_CASTEiJ_T0003986.1 MGP_CASTEiJ_G0003535.1 mouse_genomes_project 2 147087505 147097302 - Banf2os antisense antisense MGP_CASTEiJ_T0003987.1 MGP_CASTEiJ_G0003535.1 mouse_genomes_project 2 147087935 147097279 - Banf2os antisense antisense MGP_CASTEiJ_T0013345.1 MGP_CASTEiJ_G0011508.1 mouse_genomes_project 2 133918832 133919157 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059660.1 MGP_CASTEiJ_G0026170.1 mouse_genomes_project 2 183303580 183349896 + MGP_CASTEiJ_P0059660 Ntsr1 protein_coding protein_coding MGP_CASTEiJ_T0059661.1 MGP_CASTEiJ_G0026170.1 mouse_genomes_project 2 183303831 183349137 + MGP_CASTEiJ_P0059661 Ntsr1 protein_coding protein_coding MGP_CASTEiJ_T0007159.1 MGP_CASTEiJ_G0005885.1 mouse_genomes_project 2 149678323 149681499 + 4933406D12Rik lincRNA lincRNA MGP_CASTEiJ_T0013226.1 MGP_CASTEiJ_G0011389.1 mouse_genomes_project 2 87643849 87644384 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007234.1 MGP_CASTEiJ_G0005947.1 mouse_genomes_project 2 174716480 174728226 - A630075F10Rik lincRNA lincRNA MGP_CASTEiJ_T0058703.1 MGP_CASTEiJ_G0025944.1 mouse_genomes_project 2 160215666 160237077 + MGP_CASTEiJ_P0058703 Aar2 protein_coding protein_coding MGP_CASTEiJ_T0058704.1 MGP_CASTEiJ_G0025944.1 mouse_genomes_project 2 160215678 160237893 + MGP_CASTEiJ_P0058704 Aar2 protein_coding protein_coding MGP_CASTEiJ_T0058705.1 MGP_CASTEiJ_G0025944.1 mouse_genomes_project 2 160215690 160218767 + Aar2 protein_coding processed_transcript MGP_CASTEiJ_T0058706.1 MGP_CASTEiJ_G0025944.1 mouse_genomes_project 2 160215692 160219148 + MGP_CASTEiJ_P0058706 Aar2 protein_coding protein_coding MGP_CASTEiJ_T0058707.1 MGP_CASTEiJ_G0025944.1 mouse_genomes_project 2 160215706 160218901 + MGP_CASTEiJ_P0058707 Aar2 protein_coding protein_coding MGP_CASTEiJ_T0055684.1 MGP_CASTEiJ_G0025185.1 mouse_genomes_project 2 87655567 87656506 - MGP_CASTEiJ_P0055684 Olfr1110 protein_coding protein_coding MGP_CASTEiJ_T0007102.1 MGP_CASTEiJ_G0005839.1 mouse_genomes_project 2 109611217 109721993 - Gm13912 lincRNA lincRNA MGP_CASTEiJ_T0102218.1 MGP_CASTEiJ_G0038943.1 mouse_genomes_project 2 86022847 86023570 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0052329.1 MGP_CASTEiJ_G0024529.1 mouse_genomes_project 2 7062561 7085357 - MGP_CASTEiJ_P0052329 Gata3 protein_coding protein_coding MGP_CASTEiJ_T0052330.1 MGP_CASTEiJ_G0024529.1 mouse_genomes_project 2 7068711 7080422 - Gata3 protein_coding processed_transcript MGP_CASTEiJ_T0052331.1 MGP_CASTEiJ_G0024529.1 mouse_genomes_project 2 7081236 7082149 - Gata3 protein_coding processed_transcript MGP_CASTEiJ_T0052332.1 MGP_CASTEiJ_G0024529.1 mouse_genomes_project 2 7081451 7096805 - MGP_CASTEiJ_P0052332 Gata3 protein_coding protein_coding MGP_CASTEiJ_T0052333.1 MGP_CASTEiJ_G0024529.1 mouse_genomes_project 2 7084594 7094535 - Gata3 protein_coding processed_transcript MGP_CASTEiJ_T0052334.1 MGP_CASTEiJ_G0024529.1 mouse_genomes_project 2 7084649 7096773 - Gata3 protein_coding processed_transcript MGP_CASTEiJ_T0059098.1 MGP_CASTEiJ_G0026042.1 mouse_genomes_project 2 168848760 168851549 + MGP_CASTEiJ_P0059098 Wfdc13 protein_coding protein_coding MGP_CASTEiJ_T0055471.1 MGP_CASTEiJ_G0025082.1 mouse_genomes_project 2 80839609 80843812 + MGP_CASTEiJ_P0055471 protein_coding protein_coding MGP_CASTEiJ_T0001041.1 MGP_CASTEiJ_G0000977.1 mouse_genomes_project 2 70055447 70056168 - TEC TEC MGP_CASTEiJ_T0003975.1 MGP_CASTEiJ_G0003528.1 mouse_genomes_project 2 138019951 138287031 - 9630028H03Rik antisense antisense MGP_CASTEiJ_T0003976.1 MGP_CASTEiJ_G0003528.1 mouse_genomes_project 2 138284073 138286742 - 9630028H03Rik antisense antisense MGP_CASTEiJ_T0099677.1 MGP_CASTEiJ_G0036590.1 mouse_genomes_project 2 184302876 184302979 - Gm22708 snRNA snRNA MGP_CASTEiJ_T0003884.1 MGP_CASTEiJ_G0003468.1 mouse_genomes_project 2 73147290 73155718 + Gm13709 antisense antisense MGP_CASTEiJ_T0004051.1 MGP_CASTEiJ_G0003589.1 mouse_genomes_project 2 177989385 177998384 - Gm14453 antisense antisense MGP_CASTEiJ_T0011188.1 MGP_CASTEiJ_G0009376.1 mouse_genomes_project 2 150493935 150494393 + Nkx2-2os misc_RNA misc_RNA MGP_CASTEiJ_T0004001.1 MGP_CASTEiJ_G0003548.1 mouse_genomes_project 2 155868106 155872278 - Gm14161 antisense antisense MGP_CASTEiJ_T0057948.1 MGP_CASTEiJ_G0025764.1 mouse_genomes_project 2 147421207 147462393 + MGP_CASTEiJ_P0057948 Csrp2bp protein_coding protein_coding MGP_CASTEiJ_T0057949.1 MGP_CASTEiJ_G0025764.1 mouse_genomes_project 2 147421212 147426614 + Csrp2bp protein_coding processed_transcript MGP_CASTEiJ_T0057951.1 MGP_CASTEiJ_G0025764.1 mouse_genomes_project 2 147421223 147462393 + MGP_CASTEiJ_P0057951 Csrp2bp protein_coding protein_coding MGP_CASTEiJ_T0057952.1 MGP_CASTEiJ_G0025764.1 mouse_genomes_project 2 147427023 147446628 + MGP_CASTEiJ_P0057952 Csrp2bp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057953.1 MGP_CASTEiJ_G0025764.1 mouse_genomes_project 2 147428607 147442562 + Csrp2bp protein_coding processed_transcript MGP_CASTEiJ_T0057954.1 MGP_CASTEiJ_G0025764.1 mouse_genomes_project 2 147429072 147454015 + Csrp2bp protein_coding processed_transcript MGP_CASTEiJ_T0057955.1 MGP_CASTEiJ_G0025764.1 mouse_genomes_project 2 147442279 147446693 + Csrp2bp protein_coding retained_intron MGP_CASTEiJ_T0057956.1 MGP_CASTEiJ_G0025764.1 mouse_genomes_project 2 147442293 147446674 + Csrp2bp protein_coding processed_transcript MGP_CASTEiJ_T0057957.1 MGP_CASTEiJ_G0025764.1 mouse_genomes_project 2 147455582 147462392 + Csrp2bp protein_coding retained_intron MGP_CASTEiJ_T0057958.1 MGP_CASTEiJ_G0025764.1 mouse_genomes_project 2 147455782 147457589 + MGP_CASTEiJ_P0057958 Csrp2bp protein_coding protein_coding MGP_CASTEiJ_T0057959.1 MGP_CASTEiJ_G0025764.1 mouse_genomes_project 2 147457313 147462393 + MGP_CASTEiJ_P0057959 Csrp2bp protein_coding protein_coding MGP_CASTEiJ_T0017036.1 MGP_CASTEiJ_G0014738.1 mouse_genomes_project 2 69340297 69341068 - Gm13625 processed_transcript processed_transcript MGP_CASTEiJ_T0007235.1 MGP_CASTEiJ_G0005948.1 mouse_genomes_project 2 174868693 174870300 - Gm17619 lincRNA lincRNA MGP_CASTEiJ_T0056434.1 MGP_CASTEiJ_G0025414.1 mouse_genomes_project 2 106710165 106723188 - MGP_CASTEiJ_P0056434 Rcn1 protein_coding protein_coding MGP_CASTEiJ_T0056435.1 MGP_CASTEiJ_G0025414.1 mouse_genomes_project 2 106710803 106719223 - Rcn1 protein_coding retained_intron MGP_CASTEiJ_T0007005.1 MGP_CASTEiJ_G0005759.1 mouse_genomes_project 2 44293836 44295642 + 1700019E08Rik lincRNA lincRNA MGP_CASTEiJ_T0007006.1 MGP_CASTEiJ_G0005759.1 mouse_genomes_project 2 44294031 44295261 + 1700019E08Rik lincRNA lincRNA MGP_CASTEiJ_T0054348.1 MGP_CASTEiJ_G0024860.1 mouse_genomes_project 2 34612682 34613603 + MGP_CASTEiJ_P0054348 Olfr338 protein_coding protein_coding MGP_CASTEiJ_T0052164.1 MGP_CASTEiJ_G0024504.1 mouse_genomes_project 2 396571 441567 + MGP_CASTEiJ_P0052164 Dclre1c protein_coding protein_coding MGP_CASTEiJ_T0052165.1 MGP_CASTEiJ_G0024504.1 mouse_genomes_project 2 396571 438547 + MGP_CASTEiJ_P0052165 Dclre1c protein_coding protein_coding MGP_CASTEiJ_T0052166.1 MGP_CASTEiJ_G0024504.1 mouse_genomes_project 2 396590 413495 + Dclre1c protein_coding processed_transcript MGP_CASTEiJ_T0052167.1 MGP_CASTEiJ_G0024504.1 mouse_genomes_project 2 396590 429362 + MGP_CASTEiJ_P0052167 Dclre1c protein_coding protein_coding MGP_CASTEiJ_T0052168.1 MGP_CASTEiJ_G0024504.1 mouse_genomes_project 2 396605 413533 + Dclre1c protein_coding processed_transcript MGP_CASTEiJ_T0052169.1 MGP_CASTEiJ_G0024504.1 mouse_genomes_project 2 396605 438539 + MGP_CASTEiJ_P0052169 Dclre1c protein_coding protein_coding MGP_CASTEiJ_T0052170.1 MGP_CASTEiJ_G0024504.1 mouse_genomes_project 2 396642 417478 + Dclre1c protein_coding retained_intron MGP_CASTEiJ_T0052171.1 MGP_CASTEiJ_G0024504.1 mouse_genomes_project 2 416101 436321 + MGP_CASTEiJ_P0052171 Dclre1c protein_coding protein_coding MGP_CASTEiJ_T0052172.1 MGP_CASTEiJ_G0024504.1 mouse_genomes_project 2 428216 429136 + Dclre1c protein_coding processed_transcript MGP_CASTEiJ_T0013443.1 MGP_CASTEiJ_G0011606.1 mouse_genomes_project 2 171924758 171925033 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010201.1 MGP_CASTEiJ_G0008389.1 mouse_genomes_project 2 177820396 177820474 - Gm22773 miRNA miRNA MGP_CASTEiJ_T0056703.1 MGP_CASTEiJ_G0025501.1 mouse_genomes_project 2 120508844 120513705 - MGP_CASTEiJ_P0056703 Ankrd63 protein_coding protein_coding MGP_CASTEiJ_T0054159.1 MGP_CASTEiJ_G0024832.1 mouse_genomes_project 2 31863953 32028964 - MGP_CASTEiJ_P0054159 Mvb12b protein_coding protein_coding MGP_CASTEiJ_T0054160.1 MGP_CASTEiJ_G0024832.1 mouse_genomes_project 2 31921604 31925053 - Mvb12b protein_coding retained_intron MGP_CASTEiJ_T0054161.1 MGP_CASTEiJ_G0024832.1 mouse_genomes_project 2 31923461 32027863 - Mvb12b protein_coding processed_transcript MGP_CASTEiJ_T0054162.1 MGP_CASTEiJ_G0024832.1 mouse_genomes_project 2 31961355 32027863 - MGP_CASTEiJ_P0054162 Mvb12b protein_coding protein_coding MGP_CASTEiJ_T0054163.1 MGP_CASTEiJ_G0024832.1 mouse_genomes_project 2 32011963 32028500 - Mvb12b protein_coding processed_transcript MGP_CASTEiJ_T0004018.1 MGP_CASTEiJ_G0003564.1 mouse_genomes_project 2 164688378 164696342 - Gm27206 antisense antisense MGP_CASTEiJ_T0001014.1 MGP_CASTEiJ_G0000950.1 mouse_genomes_project 2 21619996 21621776 - TEC TEC MGP_CASTEiJ_T0013089.1 MGP_CASTEiJ_G0011252.1 mouse_genomes_project 2 35105497 35105966 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003984.1 MGP_CASTEiJ_G0003534.1 mouse_genomes_project 2 146754698 146791033 - Pcsk2os2 antisense antisense MGP_CASTEiJ_T0003985.1 MGP_CASTEiJ_G0003534.1 mouse_genomes_project 2 146756281 146799531 - Pcsk2os2 antisense antisense MGP_CASTEiJ_T0017123.1 MGP_CASTEiJ_G0014783.1 mouse_genomes_project 2 131591817 131612400 - 9830144P21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017124.1 MGP_CASTEiJ_G0014783.1 mouse_genomes_project 2 131610141 131616518 - 9830144P21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0007229.1 MGP_CASTEiJ_G0005943.1 mouse_genomes_project 2 173994700 174001068 + Gm14250 lincRNA lincRNA MGP_CASTEiJ_T0056489.1 MGP_CASTEiJ_G0025424.1 mouse_genomes_project 2 110720724 110786543 + MGP_CASTEiJ_P0056489 Kif18a protein_coding protein_coding MGP_CASTEiJ_T0056490.1 MGP_CASTEiJ_G0025424.1 mouse_genomes_project 2 110720812 110735950 + Kif18a protein_coding retained_intron MGP_CASTEiJ_T0056491.1 MGP_CASTEiJ_G0025424.1 mouse_genomes_project 2 110720826 110748507 + Kif18a protein_coding retained_intron MGP_CASTEiJ_T0056492.1 MGP_CASTEiJ_G0025424.1 mouse_genomes_project 2 110720838 110751840 + Kif18a protein_coding retained_intron MGP_CASTEiJ_T0056493.1 MGP_CASTEiJ_G0025424.1 mouse_genomes_project 2 110720855 110735836 + Kif18a protein_coding retained_intron MGP_CASTEiJ_T0056494.1 MGP_CASTEiJ_G0025424.1 mouse_genomes_project 2 110732060 110735950 + Kif18a protein_coding retained_intron MGP_CASTEiJ_T0007182.1 MGP_CASTEiJ_G0005903.1 mouse_genomes_project 2 160108494 160112235 - Gm14224 lincRNA lincRNA MGP_CASTEiJ_T0054848.1 MGP_CASTEiJ_G0024964.1 mouse_genomes_project 2 61113076 61405764 + MGP_CASTEiJ_P0054848 Slc4a10 protein_coding protein_coding MGP_CASTEiJ_T0054849.1 MGP_CASTEiJ_G0024964.1 mouse_genomes_project 2 61113199 61403856 + Slc4a10 protein_coding processed_transcript MGP_CASTEiJ_T0054850.1 MGP_CASTEiJ_G0024964.1 mouse_genomes_project 2 61113199 61405764 + MGP_CASTEiJ_P0054850 Slc4a10 protein_coding protein_coding MGP_CASTEiJ_T0054851.1 MGP_CASTEiJ_G0024964.1 mouse_genomes_project 2 61113259 61405764 + MGP_CASTEiJ_P0054851 Slc4a10 protein_coding protein_coding MGP_CASTEiJ_T0054852.1 MGP_CASTEiJ_G0024964.1 mouse_genomes_project 2 61223872 61235515 + Slc4a10 protein_coding processed_transcript MGP_CASTEiJ_T0054853.1 MGP_CASTEiJ_G0024964.1 mouse_genomes_project 2 61224097 61405771 + MGP_CASTEiJ_P0054853 Slc4a10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054854.1 MGP_CASTEiJ_G0024964.1 mouse_genomes_project 2 61343346 61345081 + Slc4a10 protein_coding processed_transcript MGP_CASTEiJ_T0054855.1 MGP_CASTEiJ_G0024964.1 mouse_genomes_project 2 61395246 61404410 + Slc4a10 protein_coding processed_transcript MGP_CASTEiJ_T0055583.1 MGP_CASTEiJ_G0025108.1 mouse_genomes_project 2 85274124 85277274 + MGP_CASTEiJ_P0055583 Prg2 protein_coding protein_coding MGP_CASTEiJ_T0016992.1 MGP_CASTEiJ_G0014712.1 mouse_genomes_project 2 16919039 16920362 + 1810010K12Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016993.1 MGP_CASTEiJ_G0014712.1 mouse_genomes_project 2 16919680 16922211 + 1810010K12Rik processed_transcript processed_transcript MGP_CASTEiJ_T0058425.1 MGP_CASTEiJ_G0025901.1 mouse_genomes_project 2 158143018 158180701 + MGP_CASTEiJ_P0058425 Zfp341 protein_coding protein_coding MGP_CASTEiJ_T0058426.1 MGP_CASTEiJ_G0025901.1 mouse_genomes_project 2 158143066 158180689 + MGP_CASTEiJ_P0058426 Zfp341 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058427.1 MGP_CASTEiJ_G0025901.1 mouse_genomes_project 2 158143077 158180658 + MGP_CASTEiJ_P0058427 Zfp341 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058428.1 MGP_CASTEiJ_G0025901.1 mouse_genomes_project 2 158143091 158180658 + MGP_CASTEiJ_P0058428 Zfp341 protein_coding protein_coding MGP_CASTEiJ_T0053711.1 MGP_CASTEiJ_G0024766.1 mouse_genomes_project 2 28266423 28301530 + MGP_CASTEiJ_P0053711 Ptpa protein_coding protein_coding MGP_CASTEiJ_T0053712.1 MGP_CASTEiJ_G0024766.1 mouse_genomes_project 2 28266515 28301531 + MGP_CASTEiJ_P0053712 Ptpa protein_coding protein_coding MGP_CASTEiJ_T0053713.1 MGP_CASTEiJ_G0024766.1 mouse_genomes_project 2 28266521 28285851 + MGP_CASTEiJ_P0053713 Ptpa protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053714.1 MGP_CASTEiJ_G0024766.1 mouse_genomes_project 2 28266526 28301342 + MGP_CASTEiJ_P0053714 Ptpa protein_coding protein_coding MGP_CASTEiJ_T0053715.1 MGP_CASTEiJ_G0024766.1 mouse_genomes_project 2 28266580 28301529 + Ptpa protein_coding retained_intron MGP_CASTEiJ_T0053716.1 MGP_CASTEiJ_G0024766.1 mouse_genomes_project 2 28266686 28280781 + Ptpa protein_coding processed_transcript MGP_CASTEiJ_T0053717.1 MGP_CASTEiJ_G0024766.1 mouse_genomes_project 2 28280732 28291909 + Ptpa protein_coding retained_intron MGP_CASTEiJ_T0053718.1 MGP_CASTEiJ_G0024766.1 mouse_genomes_project 2 28292036 28300678 + MGP_CASTEiJ_P0053718 Ptpa protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053719.1 MGP_CASTEiJ_G0024766.1 mouse_genomes_project 2 28295608 28300856 + MGP_CASTEiJ_P0053719 Ptpa protein_coding protein_coding MGP_CASTEiJ_T0053720.1 MGP_CASTEiJ_G0024766.1 mouse_genomes_project 2 28296489 28300535 + MGP_CASTEiJ_P0053720 Ptpa protein_coding protein_coding MGP_CASTEiJ_T0053721.1 MGP_CASTEiJ_G0024766.1 mouse_genomes_project 2 28296976 28300628 + Ptpa protein_coding processed_transcript MGP_CASTEiJ_T0053722.1 MGP_CASTEiJ_G0024766.1 mouse_genomes_project 2 28299411 28300799 + Ptpa protein_coding processed_transcript MGP_CASTEiJ_T0053723.1 MGP_CASTEiJ_G0024766.1 mouse_genomes_project 2 28299471 28300505 + Ptpa protein_coding processed_transcript MGP_CASTEiJ_T0006997.1 MGP_CASTEiJ_G0005753.1 mouse_genomes_project 2 33753755 33756300 + Gm35202 lincRNA lincRNA MGP_CASTEiJ_T0059827.1 MGP_CASTEiJ_G0026201.1 mouse_genomes_project 2 184371999 184392008 + MGP_CASTEiJ_P0059827 Tpd52l2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059828.1 MGP_CASTEiJ_G0026201.1 mouse_genomes_project 2 184372021 184385165 + Tpd52l2 protein_coding processed_transcript MGP_CASTEiJ_T0059829.1 MGP_CASTEiJ_G0026201.1 mouse_genomes_project 2 184372022 184394852 + MGP_CASTEiJ_P0059829 Tpd52l2 protein_coding protein_coding MGP_CASTEiJ_T0059830.1 MGP_CASTEiJ_G0026201.1 mouse_genomes_project 2 184372038 184394257 + MGP_CASTEiJ_P0059830 Tpd52l2 protein_coding protein_coding MGP_CASTEiJ_T0059831.1 MGP_CASTEiJ_G0026201.1 mouse_genomes_project 2 184372040 184392019 + MGP_CASTEiJ_P0059831 Tpd52l2 protein_coding protein_coding MGP_CASTEiJ_T0059832.1 MGP_CASTEiJ_G0026201.1 mouse_genomes_project 2 184372044 184394848 + MGP_CASTEiJ_P0059832 Tpd52l2 protein_coding protein_coding MGP_CASTEiJ_T0059833.1 MGP_CASTEiJ_G0026201.1 mouse_genomes_project 2 184372056 184393143 + MGP_CASTEiJ_P0059833 Tpd52l2 protein_coding protein_coding MGP_CASTEiJ_T0059834.1 MGP_CASTEiJ_G0026201.1 mouse_genomes_project 2 184372086 184377433 + Tpd52l2 protein_coding retained_intron MGP_CASTEiJ_T0059835.1 MGP_CASTEiJ_G0026201.1 mouse_genomes_project 2 184372088 184392280 + MGP_CASTEiJ_P0059835 Tpd52l2 protein_coding protein_coding MGP_CASTEiJ_T0059836.1 MGP_CASTEiJ_G0026201.1 mouse_genomes_project 2 184374727 184389949 + MGP_CASTEiJ_P0059836 Tpd52l2 protein_coding protein_coding MGP_CASTEiJ_T0059837.1 MGP_CASTEiJ_G0026201.1 mouse_genomes_project 2 184374748 184378029 + Tpd52l2 protein_coding retained_intron MGP_CASTEiJ_T0059838.1 MGP_CASTEiJ_G0026201.1 mouse_genomes_project 2 184389470 184392226 + Tpd52l2 protein_coding retained_intron MGP_CASTEiJ_T0056608.1 MGP_CASTEiJ_G0025480.1 mouse_genomes_project 2 115354569 115404180 - MGP_CASTEiJ_P0056608 Scg5 protein_coding protein_coding MGP_CASTEiJ_T0056609.1 MGP_CASTEiJ_G0025480.1 mouse_genomes_project 2 115402398 115403820 - Scg5 protein_coding processed_transcript MGP_CASTEiJ_T0054339.1 MGP_CASTEiJ_G0024858.1 mouse_genomes_project 2 34396434 34456910 + MGP_CASTEiJ_P0054339 Mrrf protein_coding protein_coding MGP_CASTEiJ_T0054340.1 MGP_CASTEiJ_G0024858.1 mouse_genomes_project 2 34396443 34398863 + Mrrf protein_coding retained_intron MGP_CASTEiJ_T0054341.1 MGP_CASTEiJ_G0024858.1 mouse_genomes_project 2 34396679 34407981 + MGP_CASTEiJ_P0054341 Mrrf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054342.1 MGP_CASTEiJ_G0024858.1 mouse_genomes_project 2 34407167 34419527 + Mrrf protein_coding processed_transcript MGP_CASTEiJ_T0058476.1 MGP_CASTEiJ_G0025913.1 mouse_genomes_project 2 158970452 159026445 - MGP_CASTEiJ_P0058476 Ncoa6 protein_coding protein_coding MGP_CASTEiJ_T0058477.1 MGP_CASTEiJ_G0025913.1 mouse_genomes_project 2 158970461 159067515 - MGP_CASTEiJ_P0058477 Ncoa6 protein_coding protein_coding MGP_CASTEiJ_T0058478.1 MGP_CASTEiJ_G0025913.1 mouse_genomes_project 2 158970465 158984598 - Ncoa6 protein_coding retained_intron MGP_CASTEiJ_T0058479.1 MGP_CASTEiJ_G0025913.1 mouse_genomes_project 2 158970465 158976475 - Ncoa6 protein_coding retained_intron MGP_CASTEiJ_T0058480.1 MGP_CASTEiJ_G0025913.1 mouse_genomes_project 2 158987869 159067603 - MGP_CASTEiJ_P0058480 Ncoa6 protein_coding protein_coding MGP_CASTEiJ_T0058481.1 MGP_CASTEiJ_G0025913.1 mouse_genomes_project 2 158997553 159001070 - Ncoa6 protein_coding processed_transcript MGP_CASTEiJ_T0058482.1 MGP_CASTEiJ_G0025913.1 mouse_genomes_project 2 159002443 159026447 - MGP_CASTEiJ_P0058482 Ncoa6 protein_coding protein_coding MGP_CASTEiJ_T0058483.1 MGP_CASTEiJ_G0025913.1 mouse_genomes_project 2 159023677 159067533 - Ncoa6 protein_coding processed_transcript MGP_CASTEiJ_T0099666.1 MGP_CASTEiJ_G0036579.1 mouse_genomes_project 2 143333300 143333407 - Gm23846 snRNA snRNA MGP_CASTEiJ_T0056211.1 MGP_CASTEiJ_G0025368.1 mouse_genomes_project 2 95048846 95084473 - MGP_CASTEiJ_P0056211 Gm27027 protein_coding protein_coding MGP_CASTEiJ_T0010194.1 MGP_CASTEiJ_G0008382.1 mouse_genomes_project 2 164562694 164562819 + Gm23968 miRNA miRNA MGP_CASTEiJ_T0059489.1 MGP_CASTEiJ_G0026127.1 mouse_genomes_project 2 177963154 177979517 + MGP_CASTEiJ_P0059489 Rae1 protein_coding protein_coding MGP_CASTEiJ_T0059490.1 MGP_CASTEiJ_G0026127.1 mouse_genomes_project 2 177963161 177973589 + MGP_CASTEiJ_P0059490 Rae1 protein_coding protein_coding MGP_CASTEiJ_T0059491.1 MGP_CASTEiJ_G0026127.1 mouse_genomes_project 2 177970783 177973588 + Rae1 protein_coding retained_intron MGP_CASTEiJ_T0059492.1 MGP_CASTEiJ_G0026127.1 mouse_genomes_project 2 177975361 177976570 + Rae1 protein_coding retained_intron MGP_CASTEiJ_T0059493.1 MGP_CASTEiJ_G0026127.1 mouse_genomes_project 2 177976209 177979203 + Rae1 protein_coding retained_intron MGP_CASTEiJ_T0058783.1 MGP_CASTEiJ_G0025959.1 mouse_genomes_project 2 161075031 161097583 - Ghrh protein_coding processed_transcript MGP_CASTEiJ_T0058784.1 MGP_CASTEiJ_G0025959.1 mouse_genomes_project 2 161075031 161096677 - MGP_CASTEiJ_P0058784 Ghrh protein_coding protein_coding MGP_CASTEiJ_T0058785.1 MGP_CASTEiJ_G0025959.1 mouse_genomes_project 2 161075031 161084625 - MGP_CASTEiJ_P0058785 Ghrh protein_coding protein_coding MGP_CASTEiJ_T0055762.1 MGP_CASTEiJ_G0025251.1 mouse_genomes_project 2 89516768 89517701 - MGP_CASTEiJ_P0055762 Olfr1199 protein_coding protein_coding MGP_CASTEiJ_T0056327.1 MGP_CASTEiJ_G0025391.1 mouse_genomes_project 2 104757731 104912648 + MGP_CASTEiJ_P0056327 Abtb2 protein_coding protein_coding MGP_CASTEiJ_T0056328.1 MGP_CASTEiJ_G0025391.1 mouse_genomes_project 2 104757956 104913567 + MGP_CASTEiJ_P0056328 Abtb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056329.1 MGP_CASTEiJ_G0025391.1 mouse_genomes_project 2 104909251 104911437 + Abtb2 protein_coding processed_transcript MGP_CASTEiJ_T0056330.1 MGP_CASTEiJ_G0025391.1 mouse_genomes_project 2 104909297 104912648 + Abtb2 protein_coding processed_transcript MGP_CASTEiJ_T0054372.1 MGP_CASTEiJ_G0024882.1 mouse_genomes_project 2 35261904 35262873 - MGP_CASTEiJ_P0054372 Olfr361 protein_coding protein_coding MGP_CASTEiJ_T0013254.1 MGP_CASTEiJ_G0011417.1 mouse_genomes_project 2 95715934 95716535 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011195.1 MGP_CASTEiJ_G0009383.1 mouse_genomes_project 2 179341642 179341706 + Gm27899 misc_RNA misc_RNA MGP_CASTEiJ_T0057838.1 MGP_CASTEiJ_G0025737.1 mouse_genomes_project 2 138813915 139136356 - MGP_CASTEiJ_P0057838 Pak7 protein_coding protein_coding MGP_CASTEiJ_T0057839.1 MGP_CASTEiJ_G0025737.1 mouse_genomes_project 2 138814707 139136378 - MGP_CASTEiJ_P0057839 Pak7 protein_coding protein_coding MGP_CASTEiJ_T0057840.1 MGP_CASTEiJ_G0025737.1 mouse_genomes_project 2 139013996 139136385 - Pak7 protein_coding retained_intron MGP_CASTEiJ_T0017040.1 MGP_CASTEiJ_G0014741.1 mouse_genomes_project 2 71396342 71406829 + Gm13662 processed_transcript processed_transcript MGP_CASTEiJ_T0059585.1 MGP_CASTEiJ_G0026153.1 mouse_genomes_project 2 181143132 181152829 + MGP_CASTEiJ_P0059585 Fam217b protein_coding protein_coding MGP_CASTEiJ_T0059586.1 MGP_CASTEiJ_G0026153.1 mouse_genomes_project 2 181143190 181148731 + Fam217b protein_coding processed_transcript MGP_CASTEiJ_T0055633.1 MGP_CASTEiJ_G0025136.1 mouse_genomes_project 2 86280978 86281915 + MGP_CASTEiJ_P0055633 Olfr1023 protein_coding protein_coding MGP_CASTEiJ_T0059513.1 MGP_CASTEiJ_G0026134.1 mouse_genomes_project 2 178587378 178600740 - MGP_CASTEiJ_P0059513 Ankrd60 protein_coding protein_coding MGP_CASTEiJ_T0059514.1 MGP_CASTEiJ_G0026134.1 mouse_genomes_project 2 178587416 178600573 - MGP_CASTEiJ_P0059514 Ankrd60 protein_coding protein_coding MGP_CASTEiJ_T0059515.1 MGP_CASTEiJ_G0026134.1 mouse_genomes_project 2 178594772 178600648 - Ankrd60 protein_coding processed_transcript MGP_CASTEiJ_T0058257.1 MGP_CASTEiJ_G0025857.1 mouse_genomes_project 2 156118792 156171743 - MGP_CASTEiJ_P0058257 Bcl2l1 protein_coding protein_coding MGP_CASTEiJ_T0058258.1 MGP_CASTEiJ_G0025857.1 mouse_genomes_project 2 156118796 156170681 - MGP_CASTEiJ_P0058258 Bcl2l1 protein_coding protein_coding MGP_CASTEiJ_T0058259.1 MGP_CASTEiJ_G0025857.1 mouse_genomes_project 2 156119535 156168555 - Bcl2l1 protein_coding processed_transcript MGP_CASTEiJ_T0058260.1 MGP_CASTEiJ_G0025857.1 mouse_genomes_project 2 156168146 156170656 - MGP_CASTEiJ_P0058260 Bcl2l1 protein_coding protein_coding MGP_CASTEiJ_T0058261.1 MGP_CASTEiJ_G0025857.1 mouse_genomes_project 2 156168381 156170330 - MGP_CASTEiJ_P0058261 Bcl2l1 protein_coding protein_coding MGP_CASTEiJ_T0058262.1 MGP_CASTEiJ_G0025857.1 mouse_genomes_project 2 156169446 156171127 - MGP_CASTEiJ_P0058262 Bcl2l1 protein_coding protein_coding MGP_CASTEiJ_T0058263.1 MGP_CASTEiJ_G0025857.1 mouse_genomes_project 2 156169548 156170667 - MGP_CASTEiJ_P0058263 Bcl2l1 protein_coding protein_coding MGP_CASTEiJ_T0058264.1 MGP_CASTEiJ_G0025857.1 mouse_genomes_project 2 156169720 156170633 - MGP_CASTEiJ_P0058264 Bcl2l1 protein_coding protein_coding MGP_CASTEiJ_T0058265.1 MGP_CASTEiJ_G0025857.1 mouse_genomes_project 2 156169776 156171725 - MGP_CASTEiJ_P0058265 Bcl2l1 protein_coding protein_coding MGP_CASTEiJ_T0013348.1 MGP_CASTEiJ_G0011511.1 mouse_genomes_project 2 134470143 134471017 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013386.1 MGP_CASTEiJ_G0011549.1 mouse_genomes_project 2 150863078 150863517 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052494.1 MGP_CASTEiJ_G0024553.1 mouse_genomes_project 2 10888009 10888916 + MGP_CASTEiJ_P0052494 Vim protein_coding protein_coding MGP_CASTEiJ_T0052495.1 MGP_CASTEiJ_G0024553.1 mouse_genomes_project 2 10888030 10896748 + MGP_CASTEiJ_P0052495 Vim protein_coding unknown_likely_coding MGP_CASTEiJ_T0052496.1 MGP_CASTEiJ_G0024553.1 mouse_genomes_project 2 10888034 10897800 + MGP_CASTEiJ_P0052496 Vim protein_coding protein_coding MGP_CASTEiJ_T0052497.1 MGP_CASTEiJ_G0024553.1 mouse_genomes_project 2 10888363 10897799 + MGP_CASTEiJ_P0052497 Vim protein_coding protein_coding MGP_CASTEiJ_T0052498.1 MGP_CASTEiJ_G0024553.1 mouse_genomes_project 2 10888404 10892675 + Vim protein_coding retained_intron MGP_CASTEiJ_T0052499.1 MGP_CASTEiJ_G0024553.1 mouse_genomes_project 2 10888605 10891508 + Vim protein_coding retained_intron MGP_CASTEiJ_T0052500.1 MGP_CASTEiJ_G0024553.1 mouse_genomes_project 2 10894329 10897451 + Vim protein_coding retained_intron MGP_CASTEiJ_T0052600.1 MGP_CASTEiJ_G0024572.1 mouse_genomes_project 2 16135364 16139226 + MGP_CASTEiJ_P0052600 Commd3 protein_coding protein_coding MGP_CASTEiJ_T0052601.1 MGP_CASTEiJ_G0024572.1 mouse_genomes_project 2 16135403 16139227 + MGP_CASTEiJ_P0052601 Commd3 protein_coding protein_coding MGP_CASTEiJ_T0052602.1 MGP_CASTEiJ_G0024572.1 mouse_genomes_project 2 16135413 16137690 + Commd3 protein_coding processed_transcript MGP_CASTEiJ_T0052603.1 MGP_CASTEiJ_G0024572.1 mouse_genomes_project 2 16135415 16137633 + Commd3 protein_coding processed_transcript MGP_CASTEiJ_T0052604.1 MGP_CASTEiJ_G0024572.1 mouse_genomes_project 2 16135416 16137510 + Commd3 protein_coding processed_transcript MGP_CASTEiJ_T0052605.1 MGP_CASTEiJ_G0024572.1 mouse_genomes_project 2 16135503 16137398 + Commd3 protein_coding processed_transcript MGP_CASTEiJ_T0052606.1 MGP_CASTEiJ_G0024572.1 mouse_genomes_project 2 16136657 16137395 + Commd3 protein_coding processed_transcript MGP_CASTEiJ_T0052607.1 MGP_CASTEiJ_G0024572.1 mouse_genomes_project 2 16136960 16138925 + Commd3 protein_coding processed_transcript MGP_CASTEiJ_T0052608.1 MGP_CASTEiJ_G0024572.1 mouse_genomes_project 2 16137084 16138978 + Commd3 protein_coding processed_transcript MGP_CASTEiJ_T0052609.1 MGP_CASTEiJ_G0024572.1 mouse_genomes_project 2 16137344 16138920 + Commd3 protein_coding processed_transcript MGP_CASTEiJ_T0052610.1 MGP_CASTEiJ_G0024572.1 mouse_genomes_project 2 16137421 16138005 + Commd3 protein_coding processed_transcript MGP_CASTEiJ_T0052611.1 MGP_CASTEiJ_G0024572.1 mouse_genomes_project 2 16137646 16138498 + Commd3 protein_coding processed_transcript MGP_CASTEiJ_T0054443.1 MGP_CASTEiJ_G0024900.1 mouse_genomes_project 2 36969350 36988932 - MGP_CASTEiJ_P0054443 Nr5a1 protein_coding protein_coding MGP_CASTEiJ_T0054444.1 MGP_CASTEiJ_G0024900.1 mouse_genomes_project 2 36969354 36991252 - MGP_CASTEiJ_P0054444 Nr5a1 protein_coding protein_coding MGP_CASTEiJ_T0054445.1 MGP_CASTEiJ_G0024900.1 mouse_genomes_project 2 36978007 36987886 - Nr5a1 protein_coding retained_intron MGP_CASTEiJ_T0003781.1 MGP_CASTEiJ_G0003389.1 mouse_genomes_project 2 14950282 14951225 + Gm13324 antisense antisense MGP_CASTEiJ_T0054874.1 MGP_CASTEiJ_G0024968.1 mouse_genomes_project 2 61690881 61744914 - MGP_CASTEiJ_P0054874 Ifih1 protein_coding protein_coding MGP_CASTEiJ_T0054875.1 MGP_CASTEiJ_G0024968.1 mouse_genomes_project 2 61692534 61744856 - MGP_CASTEiJ_P0054875 Ifih1 protein_coding protein_coding MGP_CASTEiJ_T0054876.1 MGP_CASTEiJ_G0024968.1 mouse_genomes_project 2 61703589 61744958 - Ifih1 protein_coding retained_intron MGP_CASTEiJ_T0054877.1 MGP_CASTEiJ_G0024968.1 mouse_genomes_project 2 61725850 61738266 - Ifih1 protein_coding processed_transcript MGP_CASTEiJ_T0054878.1 MGP_CASTEiJ_G0024968.1 mouse_genomes_project 2 61729900 61744861 - Ifih1 protein_coding retained_intron MGP_CASTEiJ_T0057260.1 MGP_CASTEiJ_G0025607.1 mouse_genomes_project 2 127454096 127464477 + MGP_CASTEiJ_P0057260 Dut protein_coding protein_coding MGP_CASTEiJ_T0057261.1 MGP_CASTEiJ_G0025607.1 mouse_genomes_project 2 127454407 127465348 + MGP_CASTEiJ_P0057261 Dut protein_coding protein_coding MGP_CASTEiJ_T0057262.1 MGP_CASTEiJ_G0025607.1 mouse_genomes_project 2 127454825 127455951 + Dut protein_coding processed_transcript MGP_CASTEiJ_T0059384.1 MGP_CASTEiJ_G0026098.1 mouse_genomes_project 2 172640248 172666302 - MGP_CASTEiJ_P0059384 Adnp protein_coding protein_coding MGP_CASTEiJ_T0059385.1 MGP_CASTEiJ_G0026098.1 mouse_genomes_project 2 172640248 172666105 - MGP_CASTEiJ_P0059385 Adnp protein_coding protein_coding MGP_CASTEiJ_T0059387.1 MGP_CASTEiJ_G0026098.1 mouse_genomes_project 2 172644233 172665892 - Adnp protein_coding processed_transcript MGP_CASTEiJ_T0059388.1 MGP_CASTEiJ_G0026098.1 mouse_genomes_project 2 172663539 172665892 - Adnp protein_coding retained_intron MGP_CASTEiJ_T0013449.1 MGP_CASTEiJ_G0011612.1 mouse_genomes_project 2 179033181 179033385 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007139.1 MGP_CASTEiJ_G0005869.1 mouse_genomes_project 2 131604768 131621407 + A730036I17Rik lincRNA lincRNA MGP_CASTEiJ_T0007140.1 MGP_CASTEiJ_G0005869.1 mouse_genomes_project 2 131604827 131619120 + A730036I17Rik lincRNA lincRNA MGP_CASTEiJ_T0007141.1 MGP_CASTEiJ_G0005869.1 mouse_genomes_project 2 131613967 131617840 + A730036I17Rik lincRNA lincRNA MGP_CASTEiJ_T0054983.1 MGP_CASTEiJ_G0024988.1 mouse_genomes_project 2 68051496 68078372 + MGP_CASTEiJ_P0054983 protein_coding protein_coding MGP_CASTEiJ_T0054984.1 MGP_CASTEiJ_G0024988.1 mouse_genomes_project 2 68052803 68121434 + MGP_CASTEiJ_P0054984 protein_coding protein_coding MGP_CASTEiJ_T0054985.1 MGP_CASTEiJ_G0024988.1 mouse_genomes_project 2 68052832 68064711 + protein_coding processed_transcript MGP_CASTEiJ_T0054986.1 MGP_CASTEiJ_G0024988.1 mouse_genomes_project 2 68054711 68121432 + MGP_CASTEiJ_P0054986 protein_coding protein_coding MGP_CASTEiJ_T0054987.1 MGP_CASTEiJ_G0024988.1 mouse_genomes_project 2 68101494 68102502 + protein_coding retained_intron MGP_CASTEiJ_T0013015.1 MGP_CASTEiJ_G0011178.1 mouse_genomes_project 2 5268858 5269519 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054012.1 MGP_CASTEiJ_G0024809.1 mouse_genomes_project 2 30629867 30642445 + MGP_CASTEiJ_P0054012 St6galnac4 protein_coding protein_coding MGP_CASTEiJ_T0054013.1 MGP_CASTEiJ_G0024809.1 mouse_genomes_project 2 30629911 30637025 + St6galnac4 protein_coding retained_intron MGP_CASTEiJ_T0054014.1 MGP_CASTEiJ_G0024809.1 mouse_genomes_project 2 30630353 30640449 + St6galnac4 protein_coding retained_intron MGP_CASTEiJ_T0054015.1 MGP_CASTEiJ_G0024809.1 mouse_genomes_project 2 30630397 30641822 + MGP_CASTEiJ_P0054015 St6galnac4 protein_coding protein_coding MGP_CASTEiJ_T0054016.1 MGP_CASTEiJ_G0024809.1 mouse_genomes_project 2 30637025 30639937 + MGP_CASTEiJ_P0054016 St6galnac4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056904.1 MGP_CASTEiJ_G0025547.1 mouse_genomes_project 2 122256393 122305638 - MGP_CASTEiJ_P0056904 Tmem87a protein_coding protein_coding MGP_CASTEiJ_T0056905.1 MGP_CASTEiJ_G0025547.1 mouse_genomes_project 2 122256393 122305658 - MGP_CASTEiJ_P0056905 Tmem87a protein_coding protein_coding MGP_CASTEiJ_T0056906.1 MGP_CASTEiJ_G0025547.1 mouse_genomes_project 2 122256397 122305664 - Tmem87a protein_coding processed_transcript MGP_CASTEiJ_T0056907.1 MGP_CASTEiJ_G0025547.1 mouse_genomes_project 2 122257033 122305646 - Tmem87a protein_coding processed_transcript MGP_CASTEiJ_T0056908.1 MGP_CASTEiJ_G0025547.1 mouse_genomes_project 2 122264341 122305647 - MGP_CASTEiJ_P0056908 Tmem87a protein_coding protein_coding MGP_CASTEiJ_T0056909.1 MGP_CASTEiJ_G0025547.1 mouse_genomes_project 2 122282109 122305682 - Tmem87a protein_coding processed_transcript MGP_CASTEiJ_T0056910.1 MGP_CASTEiJ_G0025547.1 mouse_genomes_project 2 122282623 122305650 - Tmem87a protein_coding retained_intron MGP_CASTEiJ_T0017004.1 MGP_CASTEiJ_G0014718.1 mouse_genomes_project 2 25194319 25197285 + Gm13421 processed_transcript processed_transcript MGP_CASTEiJ_T0017005.1 MGP_CASTEiJ_G0014718.1 mouse_genomes_project 2 25194322 25197108 + Gm13421 processed_transcript processed_transcript MGP_CASTEiJ_T0007050.1 MGP_CASTEiJ_G0005797.1 mouse_genomes_project 2 74589492 74591579 - Haglr lincRNA lincRNA MGP_CASTEiJ_T0007051.1 MGP_CASTEiJ_G0005797.1 mouse_genomes_project 2 74591505 74609827 - Haglr lincRNA lincRNA MGP_CASTEiJ_T0054375.1 MGP_CASTEiJ_G0024885.1 mouse_genomes_project 2 35365244 35369112 + MGP_CASTEiJ_P0054375 protein_coding protein_coding MGP_CASTEiJ_T0098571.1 MGP_CASTEiJ_G0035502.1 mouse_genomes_project 2 81731093 81731201 - Gm23900 rRNA rRNA MGP_CASTEiJ_T0003809.1 MGP_CASTEiJ_G0003411.1 mouse_genomes_project 2 24962470 24967060 + AA645442 antisense antisense MGP_CASTEiJ_T0013039.1 MGP_CASTEiJ_G0011202.1 mouse_genomes_project 2 14545746 14546559 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057853.1 MGP_CASTEiJ_G0025740.1 mouse_genomes_project 2 139660764 139680253 - MGP_CASTEiJ_P0057853 Mkks protein_coding protein_coding MGP_CASTEiJ_T0057854.1 MGP_CASTEiJ_G0025740.1 mouse_genomes_project 2 139660764 139680260 - MGP_CASTEiJ_P0057854 Mkks protein_coding protein_coding MGP_CASTEiJ_T0057855.1 MGP_CASTEiJ_G0025740.1 mouse_genomes_project 2 139668219 139680025 - MGP_CASTEiJ_P0057855 Mkks protein_coding protein_coding MGP_CASTEiJ_T0053860.1 MGP_CASTEiJ_G0024788.1 mouse_genomes_project 2 29795709 29830163 - MGP_CASTEiJ_P0053860 Fibcd1 protein_coding protein_coding MGP_CASTEiJ_T0053861.1 MGP_CASTEiJ_G0024788.1 mouse_genomes_project 2 29798804 29830011 - MGP_CASTEiJ_P0053861 Fibcd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0053112.1 MGP_CASTEiJ_G0024669.1 mouse_genomes_project 2 23396911 23399297 + MGP_CASTEiJ_P0053112 Lcn9 protein_coding protein_coding MGP_CASTEiJ_T0057525.1 MGP_CASTEiJ_G0025672.1 mouse_genomes_project 2 132195018 132224584 + MGP_CASTEiJ_P0057525 Stk35 protein_coding protein_coding MGP_CASTEiJ_T0057526.1 MGP_CASTEiJ_G0025672.1 mouse_genomes_project 2 132195018 132227916 + MGP_CASTEiJ_P0057526 Stk35 protein_coding protein_coding MGP_CASTEiJ_T0057527.1 MGP_CASTEiJ_G0025672.1 mouse_genomes_project 2 132195321 132219751 + MGP_CASTEiJ_P0057527 Stk35 protein_coding unknown_likely_coding MGP_CASTEiJ_T0013022.1 MGP_CASTEiJ_G0011185.1 mouse_genomes_project 2 8202914 8203753 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055673.1 MGP_CASTEiJ_G0025174.1 mouse_genomes_project 2 87343437 87344676 - MGP_CASTEiJ_P0055673 protein_coding protein_coding MGP_CASTEiJ_T0053177.1 MGP_CASTEiJ_G0024680.1 mouse_genomes_project 2 23959074 23963045 - Dnlz protein_coding processed_transcript MGP_CASTEiJ_T0053178.1 MGP_CASTEiJ_G0024680.1 mouse_genomes_project 2 23959074 23963055 - MGP_CASTEiJ_P0053178 Dnlz protein_coding protein_coding MGP_CASTEiJ_T0054714.1 MGP_CASTEiJ_G0024946.1 mouse_genomes_project 2 57344772 57483325 - Acvr1 protein_coding processed_transcript MGP_CASTEiJ_T0054715.1 MGP_CASTEiJ_G0024946.1 mouse_genomes_project 2 57410244 57483325 - MGP_CASTEiJ_P0054715 Acvr1 protein_coding protein_coding MGP_CASTEiJ_T0054716.1 MGP_CASTEiJ_G0024946.1 mouse_genomes_project 2 57410251 57540487 - MGP_CASTEiJ_P0054716 Acvr1 protein_coding protein_coding MGP_CASTEiJ_T0054717.1 MGP_CASTEiJ_G0024946.1 mouse_genomes_project 2 57410251 57540485 - MGP_CASTEiJ_P0054717 Acvr1 protein_coding protein_coding MGP_CASTEiJ_T0054718.1 MGP_CASTEiJ_G0024946.1 mouse_genomes_project 2 57410961 57542569 - MGP_CASTEiJ_P0054718 Acvr1 protein_coding protein_coding MGP_CASTEiJ_T0054719.1 MGP_CASTEiJ_G0024946.1 mouse_genomes_project 2 57411342 57502825 - MGP_CASTEiJ_P0054719 Acvr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054721.1 MGP_CASTEiJ_G0024946.1 mouse_genomes_project 2 57442016 57506940 - MGP_CASTEiJ_P0054721 Acvr1 protein_coding protein_coding MGP_CASTEiJ_T0055026.1 MGP_CASTEiJ_G0024998.1 mouse_genomes_project 2 69134251 69164077 - MGP_CASTEiJ_P0055026 Fastkd1 protein_coding protein_coding MGP_CASTEiJ_T0055027.1 MGP_CASTEiJ_G0024998.1 mouse_genomes_project 2 69134369 69163923 - MGP_CASTEiJ_P0055027 Fastkd1 protein_coding protein_coding MGP_CASTEiJ_T0055028.1 MGP_CASTEiJ_G0024998.1 mouse_genomes_project 2 69154183 69164967 - Fastkd1 protein_coding retained_intron MGP_CASTEiJ_T0055029.1 MGP_CASTEiJ_G0024998.1 mouse_genomes_project 2 69158848 69164985 - Fastkd1 protein_coding retained_intron MGP_CASTEiJ_T0052955.1 MGP_CASTEiJ_G0024636.1 mouse_genomes_project 2 22870805 22883083 + MGP_CASTEiJ_P0052955 Man1b1 protein_coding protein_coding MGP_CASTEiJ_T0052956.1 MGP_CASTEiJ_G0024636.1 mouse_genomes_project 2 22871196 22893273 + MGP_CASTEiJ_P0052956 Man1b1 protein_coding protein_coding MGP_CASTEiJ_T0052957.1 MGP_CASTEiJ_G0024636.1 mouse_genomes_project 2 22871229 22884353 + Man1b1 protein_coding processed_transcript MGP_CASTEiJ_T0052958.1 MGP_CASTEiJ_G0024636.1 mouse_genomes_project 2 22871240 22876663 + Man1b1 protein_coding processed_transcript MGP_CASTEiJ_T0052959.1 MGP_CASTEiJ_G0024636.1 mouse_genomes_project 2 22876606 22885071 + Man1b1 protein_coding processed_transcript MGP_CASTEiJ_T0052960.1 MGP_CASTEiJ_G0024636.1 mouse_genomes_project 2 22884805 22885509 + Man1b1 protein_coding processed_transcript MGP_CASTEiJ_T0013172.1 MGP_CASTEiJ_G0011335.1 mouse_genomes_project 2 67451017 67451556 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056522.1 MGP_CASTEiJ_G0025431.1 mouse_genomes_project 2 112028525 112094064 + Slc5a12 protein_coding processed_transcript MGP_CASTEiJ_T0056523.1 MGP_CASTEiJ_G0025431.1 mouse_genomes_project 2 112042600 112069821 + Slc5a12 protein_coding retained_intron MGP_CASTEiJ_T0056524.1 MGP_CASTEiJ_G0025431.1 mouse_genomes_project 2 112042783 112093896 + MGP_CASTEiJ_P0056524 Slc5a12 protein_coding protein_coding MGP_CASTEiJ_T0054520.1 MGP_CASTEiJ_G0024914.1 mouse_genomes_project 2 43099155 43302779 - MGP_CASTEiJ_P0054520 Gtdc1 protein_coding protein_coding MGP_CASTEiJ_T0054521.1 MGP_CASTEiJ_G0024914.1 mouse_genomes_project 2 43099868 43107427 - Gtdc1 protein_coding processed_transcript MGP_CASTEiJ_T0054522.1 MGP_CASTEiJ_G0024914.1 mouse_genomes_project 2 43100186 43418613 - MGP_CASTEiJ_P0054522 Gtdc1 protein_coding protein_coding MGP_CASTEiJ_T0054523.1 MGP_CASTEiJ_G0024914.1 mouse_genomes_project 2 43106448 43107794 - Gtdc1 protein_coding processed_transcript MGP_CASTEiJ_T0054524.1 MGP_CASTEiJ_G0024914.1 mouse_genomes_project 2 43111561 43488299 - MGP_CASTEiJ_P0054524 Gtdc1 protein_coding protein_coding MGP_CASTEiJ_T0054525.1 MGP_CASTEiJ_G0024914.1 mouse_genomes_project 2 43173875 43488402 - Gtdc1 protein_coding processed_transcript MGP_CASTEiJ_T0054526.1 MGP_CASTEiJ_G0024914.1 mouse_genomes_project 2 43176010 43488795 - MGP_CASTEiJ_P0054526 Gtdc1 protein_coding protein_coding MGP_CASTEiJ_T0054527.1 MGP_CASTEiJ_G0024914.1 mouse_genomes_project 2 43298235 43369036 - Gtdc1 protein_coding processed_transcript MGP_CASTEiJ_T0054528.1 MGP_CASTEiJ_G0024914.1 mouse_genomes_project 2 43333071 43488374 - MGP_CASTEiJ_P0054528 Gtdc1 protein_coding protein_coding MGP_CASTEiJ_T0054529.1 MGP_CASTEiJ_G0024914.1 mouse_genomes_project 2 43336235 43488372 - Gtdc1 protein_coding processed_transcript MGP_CASTEiJ_T0054530.1 MGP_CASTEiJ_G0024914.1 mouse_genomes_project 2 43338699 43488287 - Gtdc1 protein_coding processed_transcript MGP_CASTEiJ_T0059110.1 MGP_CASTEiJ_G0026048.1 mouse_genomes_project 2 168949315 168951864 - MGP_CASTEiJ_P0059110 Tnnc2 protein_coding protein_coding MGP_CASTEiJ_T0059111.1 MGP_CASTEiJ_G0026048.1 mouse_genomes_project 2 168950098 168952090 - Tnnc2 protein_coding processed_transcript MGP_CASTEiJ_T0098862.1 MGP_CASTEiJ_G0035787.1 mouse_genomes_project 2 1199684 1201981 + Gm38348 sense_intronic sense_intronic MGP_CASTEiJ_T0058429.1 MGP_CASTEiJ_G0025902.1 mouse_genomes_project 2 158194359 158239094 + MGP_CASTEiJ_P0058429 Chmp4b protein_coding unknown_likely_coding MGP_CASTEiJ_T0053725.1 MGP_CASTEiJ_G0024768.1 mouse_genomes_project 2 28467164 28482212 + MGP_CASTEiJ_P0053725 Cstad protein_coding protein_coding MGP_CASTEiJ_T0053726.1 MGP_CASTEiJ_G0024768.1 mouse_genomes_project 2 28477416 28481484 + Cstad protein_coding processed_transcript MGP_CASTEiJ_T0007198.1 MGP_CASTEiJ_G0005917.1 mouse_genomes_project 2 167158321 167180318 + Gm11454 lincRNA lincRNA MGP_CASTEiJ_T0059882.1 MGP_CASTEiJ_G0026208.1 mouse_genomes_project 2 184575621 184582675 + Tcea2 protein_coding retained_intron MGP_CASTEiJ_T0059883.1 MGP_CASTEiJ_G0026208.1 mouse_genomes_project 2 184575621 184583396 + MGP_CASTEiJ_P0059883 Tcea2 protein_coding protein_coding MGP_CASTEiJ_T0059884.1 MGP_CASTEiJ_G0026208.1 mouse_genomes_project 2 184576501 184583376 + MGP_CASTEiJ_P0059884 Tcea2 protein_coding protein_coding MGP_CASTEiJ_T0059885.1 MGP_CASTEiJ_G0026208.1 mouse_genomes_project 2 184578196 184583370 + MGP_CASTEiJ_P0059885 Tcea2 protein_coding protein_coding MGP_CASTEiJ_T0059886.1 MGP_CASTEiJ_G0026208.1 mouse_genomes_project 2 184578477 184581620 + Tcea2 protein_coding processed_transcript MGP_CASTEiJ_T0059887.1 MGP_CASTEiJ_G0026208.1 mouse_genomes_project 2 184578886 184583236 + Tcea2 protein_coding retained_intron MGP_CASTEiJ_T0059888.1 MGP_CASTEiJ_G0026208.1 mouse_genomes_project 2 184578912 184582262 + Tcea2 protein_coding retained_intron MGP_CASTEiJ_T0059889.1 MGP_CASTEiJ_G0026208.1 mouse_genomes_project 2 184582840 184583387 + Tcea2 protein_coding processed_transcript MGP_CASTEiJ_T0055743.1 MGP_CASTEiJ_G0025233.1 mouse_genomes_project 2 88700743 88814452 - MGP_CASTEiJ_P0055743 protein_coding protein_coding MGP_CASTEiJ_T0053130.1 MGP_CASTEiJ_G0024672.1 mouse_genomes_project 2 23508680 23570692 - MGP_CASTEiJ_P0053130 Camsap1 protein_coding protein_coding MGP_CASTEiJ_T0053131.1 MGP_CASTEiJ_G0024672.1 mouse_genomes_project 2 23514165 23522510 - MGP_CASTEiJ_P0053131 Camsap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0053132.1 MGP_CASTEiJ_G0024672.1 mouse_genomes_project 2 23514371 23519987 - Camsap1 protein_coding processed_transcript MGP_CASTEiJ_T0053133.1 MGP_CASTEiJ_G0024672.1 mouse_genomes_project 2 23514382 23519041 - Camsap1 protein_coding processed_transcript MGP_CASTEiJ_T0053134.1 MGP_CASTEiJ_G0024672.1 mouse_genomes_project 2 23523360 23570348 - MGP_CASTEiJ_P0053134 Camsap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0053135.1 MGP_CASTEiJ_G0024672.1 mouse_genomes_project 2 23527109 23551729 - MGP_CASTEiJ_P0053135 Camsap1 protein_coding protein_coding MGP_CASTEiJ_T0007057.1 MGP_CASTEiJ_G0005803.1 mouse_genomes_project 2 75338850 75344575 - Gm13660 lincRNA lincRNA MGP_CASTEiJ_T0059035.1 MGP_CASTEiJ_G0026016.1 mouse_genomes_project 2 168300052 168309085 - MGP_CASTEiJ_P0059035 Wfdc5 protein_coding protein_coding MGP_CASTEiJ_T0059036.1 MGP_CASTEiJ_G0026016.1 mouse_genomes_project 2 168301186 168308941 - MGP_CASTEiJ_P0059036 Wfdc5 protein_coding protein_coding MGP_CASTEiJ_T0007136.1 MGP_CASTEiJ_G0005866.1 mouse_genomes_project 2 130508652 130523779 + Gm14009 lincRNA lincRNA MGP_CASTEiJ_T0011171.1 MGP_CASTEiJ_G0009359.1 mouse_genomes_project 2 65889193 65889478 + Gm23046 misc_RNA misc_RNA MGP_CASTEiJ_T0010111.1 MGP_CASTEiJ_G0008299.1 mouse_genomes_project 2 27642081 27642146 + Mir219b miRNA miRNA MGP_CASTEiJ_T0052272.1 MGP_CASTEiJ_G0024522.1 mouse_genomes_project 2 2949935 2974197 - MGP_CASTEiJ_P0052272 Sec61a2 protein_coding protein_coding MGP_CASTEiJ_T0052273.1 MGP_CASTEiJ_G0024522.1 mouse_genomes_project 2 2949977 2974099 - MGP_CASTEiJ_P0052273 Sec61a2 protein_coding protein_coding MGP_CASTEiJ_T0052274.1 MGP_CASTEiJ_G0024522.1 mouse_genomes_project 2 2950566 2955420 - MGP_CASTEiJ_P0052274 Sec61a2 protein_coding protein_coding MGP_CASTEiJ_T0052275.1 MGP_CASTEiJ_G0024522.1 mouse_genomes_project 2 2950964 2953762 - Sec61a2 protein_coding processed_transcript MGP_CASTEiJ_T0052276.1 MGP_CASTEiJ_G0024522.1 mouse_genomes_project 2 2952382 2953262 - Sec61a2 protein_coding processed_transcript MGP_CASTEiJ_T0052277.1 MGP_CASTEiJ_G0024522.1 mouse_genomes_project 2 2952769 2955984 - Sec61a2 protein_coding processed_transcript MGP_CASTEiJ_T0052278.1 MGP_CASTEiJ_G0024522.1 mouse_genomes_project 2 2955365 2956943 - Sec61a2 protein_coding processed_transcript MGP_CASTEiJ_T0052279.1 MGP_CASTEiJ_G0024522.1 mouse_genomes_project 2 2955433 2957324 - Sec61a2 protein_coding processed_transcript MGP_CASTEiJ_T0052280.1 MGP_CASTEiJ_G0024522.1 mouse_genomes_project 2 2956807 2974084 - MGP_CASTEiJ_P0052280 Sec61a2 protein_coding protein_coding MGP_CASTEiJ_T0052281.1 MGP_CASTEiJ_G0024522.1 mouse_genomes_project 2 2960790 2974099 - Sec61a2 protein_coding retained_intron MGP_CASTEiJ_T0058099.1 MGP_CASTEiJ_G0025805.1 mouse_genomes_project 2 153324781 153330281 - MGP_CASTEiJ_P0058099 Zfp120 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058100.1 MGP_CASTEiJ_G0025805.1 mouse_genomes_project 2 153327512 153350977 - MGP_CASTEiJ_P0058100 Zfp120 protein_coding protein_coding MGP_CASTEiJ_T0055478.1 MGP_CASTEiJ_G0025085.1 mouse_genomes_project 2 83890263 83904084 + Zc3h15 protein_coding processed_transcript MGP_CASTEiJ_T0055479.1 MGP_CASTEiJ_G0025085.1 mouse_genomes_project 2 83890319 83899337 + Zc3h15 protein_coding processed_transcript MGP_CASTEiJ_T0055480.1 MGP_CASTEiJ_G0025085.1 mouse_genomes_project 2 83890405 83905925 + Zc3h15 protein_coding processed_transcript MGP_CASTEiJ_T0055481.1 MGP_CASTEiJ_G0025085.1 mouse_genomes_project 2 83890435 83913416 + MGP_CASTEiJ_P0055481 Zc3h15 protein_coding protein_coding MGP_CASTEiJ_T0055482.1 MGP_CASTEiJ_G0025085.1 mouse_genomes_project 2 83902400 83903848 + Zc3h15 protein_coding processed_transcript MGP_CASTEiJ_T0055483.1 MGP_CASTEiJ_G0025085.1 mouse_genomes_project 2 83902893 83907276 + Zc3h15 protein_coding processed_transcript MGP_CASTEiJ_T0055484.1 MGP_CASTEiJ_G0025085.1 mouse_genomes_project 2 83905751 83914670 + Zc3h15 protein_coding processed_transcript MGP_CASTEiJ_T0054365.1 MGP_CASTEiJ_G0024876.1 mouse_genomes_project 2 35103343 35104297 + MGP_CASTEiJ_P0054365 Olfr354 protein_coding protein_coding MGP_CASTEiJ_T0010202.1 MGP_CASTEiJ_G0008390.1 mouse_genomes_project 2 178728090 178728209 - Mir6340 miRNA miRNA MGP_CASTEiJ_T0056925.1 MGP_CASTEiJ_G0025549.1 mouse_genomes_project 2 122363723 122414724 + Capn3 protein_coding processed_transcript MGP_CASTEiJ_T0056926.1 MGP_CASTEiJ_G0025549.1 mouse_genomes_project 2 122363723 122414584 + Capn3 protein_coding processed_transcript MGP_CASTEiJ_T0056927.1 MGP_CASTEiJ_G0025549.1 mouse_genomes_project 2 122371567 122414724 + MGP_CASTEiJ_P0056927 Capn3 protein_coding protein_coding MGP_CASTEiJ_T0056928.1 MGP_CASTEiJ_G0025549.1 mouse_genomes_project 2 122371567 122414724 + MGP_CASTEiJ_P0056928 Capn3 protein_coding protein_coding MGP_CASTEiJ_T0056929.1 MGP_CASTEiJ_G0025549.1 mouse_genomes_project 2 122371861 122414310 + MGP_CASTEiJ_P0056929 Capn3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056930.1 MGP_CASTEiJ_G0025549.1 mouse_genomes_project 2 122386821 122414724 + MGP_CASTEiJ_P0056930 Capn3 protein_coding protein_coding MGP_CASTEiJ_T0056931.1 MGP_CASTEiJ_G0025549.1 mouse_genomes_project 2 122386823 122414724 + MGP_CASTEiJ_P0056931 Capn3 protein_coding protein_coding MGP_CASTEiJ_T0056932.1 MGP_CASTEiJ_G0025549.1 mouse_genomes_project 2 122386873 122414724 + MGP_CASTEiJ_P0056932 Capn3 protein_coding protein_coding MGP_CASTEiJ_T0056933.1 MGP_CASTEiJ_G0025549.1 mouse_genomes_project 2 122386879 122414325 + Capn3 protein_coding processed_transcript MGP_CASTEiJ_T0056934.1 MGP_CASTEiJ_G0025549.1 mouse_genomes_project 2 122386879 122414724 + MGP_CASTEiJ_P0056934 Capn3 protein_coding protein_coding MGP_CASTEiJ_T0056935.1 MGP_CASTEiJ_G0025549.1 mouse_genomes_project 2 122394437 122394712 + Capn3 protein_coding processed_transcript MGP_CASTEiJ_T0056936.1 MGP_CASTEiJ_G0025549.1 mouse_genomes_project 2 122410062 122413038 + Capn3 protein_coding processed_transcript MGP_CASTEiJ_T0056937.1 MGP_CASTEiJ_G0025549.1 mouse_genomes_project 2 122411046 122412863 + Capn3 protein_coding processed_transcript MGP_CASTEiJ_T0056938.1 MGP_CASTEiJ_G0025549.1 mouse_genomes_project 2 122411120 122413216 + Capn3 protein_coding processed_transcript MGP_CASTEiJ_T0011192.1 MGP_CASTEiJ_G0009380.1 mouse_genomes_project 2 168931620 168931936 + Gm22596 misc_RNA misc_RNA MGP_CASTEiJ_T0100860.1 MGP_CASTEiJ_G0037773.1 mouse_genomes_project 2 24536464 24536535 + Gm24134 snoRNA snoRNA MGP_CASTEiJ_T0010154.1 MGP_CASTEiJ_G0008342.1 mouse_genomes_project 2 95343310 95343400 - Mir129-2 miRNA miRNA MGP_CASTEiJ_T0056144.1 MGP_CASTEiJ_G0025356.1 mouse_genomes_project 2 93592993 93610333 + MGP_CASTEiJ_P0056144 Chst1 protein_coding protein_coding MGP_CASTEiJ_T0006984.1 MGP_CASTEiJ_G0005743.1 mouse_genomes_project 2 28512240 28577201 + 9330198N18Rik lincRNA lincRNA MGP_CASTEiJ_T0013038.1 MGP_CASTEiJ_G0011201.1 mouse_genomes_project 2 14374053 14375060 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010128.1 MGP_CASTEiJ_G0008316.1 mouse_genomes_project 2 37140423 37140499 + Mir181a-2 miRNA miRNA MGP_CASTEiJ_T0013374.1 MGP_CASTEiJ_G0011537.1 mouse_genomes_project 2 147402680 147403083 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056556.1 MGP_CASTEiJ_G0025458.1 mouse_genomes_project 2 113373617 113374556 - MGP_CASTEiJ_P0056556 Olfr1305 protein_coding protein_coding MGP_CASTEiJ_T0099629.1 MGP_CASTEiJ_G0036542.1 mouse_genomes_project 2 30636218 30636323 - Gm23369 snRNA snRNA MGP_CASTEiJ_T0100877.1 MGP_CASTEiJ_G0037790.1 mouse_genomes_project 2 53476918 53477057 - Gm24549 snoRNA snoRNA MGP_CASTEiJ_T0003826.1 MGP_CASTEiJ_G0003426.1 mouse_genomes_project 2 30950814 30953063 - Gm13523 antisense antisense MGP_CASTEiJ_T0054621.1 MGP_CASTEiJ_G0024927.1 mouse_genomes_project 2 50793827 50824091 - MGP_CASTEiJ_P0054621 Nmi protein_coding protein_coding MGP_CASTEiJ_T0054622.1 MGP_CASTEiJ_G0024927.1 mouse_genomes_project 2 50793841 50823873 - MGP_CASTEiJ_P0054622 Nmi protein_coding protein_coding MGP_CASTEiJ_T0054623.1 MGP_CASTEiJ_G0024927.1 mouse_genomes_project 2 50793845 50823885 - MGP_CASTEiJ_P0054623 Nmi protein_coding protein_coding MGP_CASTEiJ_T0054624.1 MGP_CASTEiJ_G0024927.1 mouse_genomes_project 2 50793866 50797967 - MGP_CASTEiJ_P0054624 Nmi protein_coding protein_coding MGP_CASTEiJ_T0054625.1 MGP_CASTEiJ_G0024927.1 mouse_genomes_project 2 50803433 50824348 - MGP_CASTEiJ_P0054625 Nmi protein_coding protein_coding MGP_CASTEiJ_T0054626.1 MGP_CASTEiJ_G0024927.1 mouse_genomes_project 2 50807630 50823841 - Nmi protein_coding retained_intron MGP_CASTEiJ_T0059479.1 MGP_CASTEiJ_G0026124.1 mouse_genomes_project 2 177459014 177468232 + MGP_CASTEiJ_P0059479 Tfap2c protein_coding unknown_likely_coding MGP_CASTEiJ_T0059480.1 MGP_CASTEiJ_G0026124.1 mouse_genomes_project 2 177461554 177470671 + MGP_CASTEiJ_P0059480 Tfap2c protein_coding protein_coding MGP_CASTEiJ_T0059481.1 MGP_CASTEiJ_G0026124.1 mouse_genomes_project 2 177462888 177464318 + Tfap2c protein_coding processed_transcript MGP_CASTEiJ_T0098868.1 MGP_CASTEiJ_G0035793.1 mouse_genomes_project 2 116550828 116551848 + Gm28492 sense_intronic sense_intronic MGP_CASTEiJ_T0013387.1 MGP_CASTEiJ_G0011550.1 mouse_genomes_project 2 151290116 151290610 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055302.1 MGP_CASTEiJ_G0025053.1 mouse_genomes_project 2 75562721 75592149 - MGP_CASTEiJ_P0055302 Nfe2l2 protein_coding protein_coding MGP_CASTEiJ_T0055303.1 MGP_CASTEiJ_G0025053.1 mouse_genomes_project 2 75578368 75591997 - Nfe2l2 protein_coding processed_transcript MGP_CASTEiJ_T0013029.1 MGP_CASTEiJ_G0011192.1 mouse_genomes_project 2 12045292 12045627 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102240.1 MGP_CASTEiJ_G0038965.1 mouse_genomes_project 2 88667390 88668341 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0007048.1 MGP_CASTEiJ_G0005796.1 mouse_genomes_project 2 74534868 74536717 + Gm14396 lincRNA lincRNA MGP_CASTEiJ_T0007049.1 MGP_CASTEiJ_G0005796.1 mouse_genomes_project 2 74534949 74536717 + Gm14396 lincRNA lincRNA MGP_CASTEiJ_T0013448.1 MGP_CASTEiJ_G0011611.1 mouse_genomes_project 2 176945572 176946187 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058241.1 MGP_CASTEiJ_G0025850.1 mouse_genomes_project 2 155925859 155936679 + MGP_CASTEiJ_P0058241 Defb36 protein_coding protein_coding MGP_CASTEiJ_T0055801.1 MGP_CASTEiJ_G0025284.1 mouse_genomes_project 2 90291094 90292039 - MGP_CASTEiJ_P0055801 Olfr1241 protein_coding protein_coding MGP_CASTEiJ_T0006959.1 MGP_CASTEiJ_G0005726.1 mouse_genomes_project 2 14567017 14570753 - Gm13322 lincRNA lincRNA MGP_CASTEiJ_T0058533.1 MGP_CASTEiJ_G0025923.1 mouse_genomes_project 2 159438400 159440097 - MGP_CASTEiJ_P0058533 BC029722 protein_coding protein_coding MGP_CASTEiJ_T0055591.1 MGP_CASTEiJ_G0025111.1 mouse_genomes_project 2 85337977 85347862 + MGP_CASTEiJ_P0055591 Ssrp1 protein_coding protein_coding MGP_CASTEiJ_T0055592.1 MGP_CASTEiJ_G0025111.1 mouse_genomes_project 2 85338194 85347859 + MGP_CASTEiJ_P0055592 Ssrp1 protein_coding protein_coding MGP_CASTEiJ_T0055593.1 MGP_CASTEiJ_G0025111.1 mouse_genomes_project 2 85338196 85340017 + Ssrp1 protein_coding processed_transcript MGP_CASTEiJ_T0055594.1 MGP_CASTEiJ_G0025111.1 mouse_genomes_project 2 85338198 85346525 + MGP_CASTEiJ_P0055594 Ssrp1 protein_coding protein_coding MGP_CASTEiJ_T0055595.1 MGP_CASTEiJ_G0025111.1 mouse_genomes_project 2 85338276 85341201 + Ssrp1 protein_coding processed_transcript MGP_CASTEiJ_T0055596.1 MGP_CASTEiJ_G0025111.1 mouse_genomes_project 2 85340857 85341768 + Ssrp1 protein_coding processed_transcript MGP_CASTEiJ_T0055597.1 MGP_CASTEiJ_G0025111.1 mouse_genomes_project 2 85341919 85343056 + Ssrp1 protein_coding processed_transcript MGP_CASTEiJ_T0055598.1 MGP_CASTEiJ_G0025111.1 mouse_genomes_project 2 85346003 85347471 + Ssrp1 protein_coding processed_transcript MGP_CASTEiJ_T0055599.1 MGP_CASTEiJ_G0025111.1 mouse_genomes_project 2 85346107 85347038 + Ssrp1 protein_coding processed_transcript MGP_CASTEiJ_T0059147.1 MGP_CASTEiJ_G0026056.1 mouse_genomes_project 2 169015724 169033936 - MGP_CASTEiJ_P0059147 Pltp protein_coding protein_coding MGP_CASTEiJ_T0059148.1 MGP_CASTEiJ_G0026056.1 mouse_genomes_project 2 169015724 169033845 - MGP_CASTEiJ_P0059148 Pltp protein_coding protein_coding MGP_CASTEiJ_T0059149.1 MGP_CASTEiJ_G0026056.1 mouse_genomes_project 2 169015724 169034014 - MGP_CASTEiJ_P0059149 Pltp protein_coding protein_coding MGP_CASTEiJ_T0059150.1 MGP_CASTEiJ_G0026056.1 mouse_genomes_project 2 169023073 169033099 - Pltp protein_coding retained_intron MGP_CASTEiJ_T0059151.1 MGP_CASTEiJ_G0026056.1 mouse_genomes_project 2 169028766 169033929 - Pltp protein_coding processed_transcript MGP_CASTEiJ_T0059152.1 MGP_CASTEiJ_G0026056.1 mouse_genomes_project 2 169028903 169033923 - MGP_CASTEiJ_P0059152 Pltp protein_coding protein_coding MGP_CASTEiJ_T0059153.1 MGP_CASTEiJ_G0026056.1 mouse_genomes_project 2 169030595 169033933 - MGP_CASTEiJ_P0059153 Pltp protein_coding protein_coding MGP_CASTEiJ_T0098372.1 MGP_CASTEiJ_G0035303.1 mouse_genomes_project 2 92859570 92859971 - pseudogene pseudogene MGP_CASTEiJ_T0055681.1 MGP_CASTEiJ_G0025182.1 mouse_genomes_project 2 87578934 87579873 - MGP_CASTEiJ_P0055681 Olfr1107 protein_coding protein_coding MGP_CASTEiJ_T0013392.1 MGP_CASTEiJ_G0011555.1 mouse_genomes_project 2 153619688 153620087 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055668.1 MGP_CASTEiJ_G0025169.1 mouse_genomes_project 2 87219346 87220282 - MGP_CASTEiJ_P0055668 Olfr1089 protein_coding protein_coding MGP_CASTEiJ_T0055281.1 MGP_CASTEiJ_G0025046.1 mouse_genomes_project 2 74543955 74546129 + MGP_CASTEiJ_P0055281 Hoxd8 protein_coding protein_coding MGP_CASTEiJ_T0055282.1 MGP_CASTEiJ_G0025046.1 mouse_genomes_project 2 74544245 74547250 + MGP_CASTEiJ_P0055282 Hoxd8 protein_coding protein_coding MGP_CASTEiJ_T0055283.1 MGP_CASTEiJ_G0025046.1 mouse_genomes_project 2 74544488 74546624 + MGP_CASTEiJ_P0055283 Hoxd8 protein_coding protein_coding MGP_CASTEiJ_T0013071.1 MGP_CASTEiJ_G0011234.1 mouse_genomes_project 2 24341572 24342282 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013005.1 MGP_CASTEiJ_G0011168.1 mouse_genomes_project 2 1024871 1026168 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003981.1 MGP_CASTEiJ_G0003532.1 mouse_genomes_project 2 145909005 145909612 + Kif16bos antisense antisense MGP_CASTEiJ_T0054436.1 MGP_CASTEiJ_G0024898.1 mouse_genomes_project 2 36780547 36864220 + MGP_CASTEiJ_P0054436 Nek6 protein_coding protein_coding MGP_CASTEiJ_T0054437.1 MGP_CASTEiJ_G0024898.1 mouse_genomes_project 2 36780572 36857080 + MGP_CASTEiJ_P0054437 Nek6 protein_coding protein_coding MGP_CASTEiJ_T0054438.1 MGP_CASTEiJ_G0024898.1 mouse_genomes_project 2 36780718 36855370 + MGP_CASTEiJ_P0054438 Nek6 protein_coding protein_coding MGP_CASTEiJ_T0054439.1 MGP_CASTEiJ_G0024898.1 mouse_genomes_project 2 36783484 36829783 + MGP_CASTEiJ_P0054439 Nek6 protein_coding protein_coding MGP_CASTEiJ_T0054440.1 MGP_CASTEiJ_G0024898.1 mouse_genomes_project 2 36783529 36832844 + MGP_CASTEiJ_P0054440 Nek6 protein_coding protein_coding MGP_CASTEiJ_T0003928.1 MGP_CASTEiJ_G0003495.1 mouse_genomes_project 2 114997053 114998677 - Gm13966 antisense antisense MGP_CASTEiJ_T0058047.1 MGP_CASTEiJ_G0025783.1 mouse_genomes_project 2 150336408 150361912 - MGP_CASTEiJ_P0058047 Nkx2-2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058048.1 MGP_CASTEiJ_G0025783.1 mouse_genomes_project 2 150352876 150361960 - MGP_CASTEiJ_P0058048 Nkx2-2 protein_coding protein_coding MGP_CASTEiJ_T0058049.1 MGP_CASTEiJ_G0025783.1 mouse_genomes_project 2 150359118 150362263 - MGP_CASTEiJ_P0058049 Nkx2-2 protein_coding protein_coding MGP_CASTEiJ_T0058050.1 MGP_CASTEiJ_G0025783.1 mouse_genomes_project 2 150362163 150370133 - Nkx2-2 protein_coding processed_transcript MGP_CASTEiJ_T0058051.1 MGP_CASTEiJ_G0025783.1 mouse_genomes_project 2 150362240 150370132 - Nkx2-2 protein_coding processed_transcript MGP_CASTEiJ_T0053071.1 MGP_CASTEiJ_G0024654.1 mouse_genomes_project 2 23130100 23136513 - MGP_CASTEiJ_P0053071 Gm996 protein_coding protein_coding MGP_CASTEiJ_T0053072.1 MGP_CASTEiJ_G0024654.1 mouse_genomes_project 2 23130114 23136542 - MGP_CASTEiJ_P0053072 Gm996 protein_coding protein_coding MGP_CASTEiJ_T0053073.1 MGP_CASTEiJ_G0024654.1 mouse_genomes_project 2 23131742 23134667 - MGP_CASTEiJ_P0053073 Gm996 protein_coding protein_coding MGP_CASTEiJ_T0053074.1 MGP_CASTEiJ_G0024654.1 mouse_genomes_project 2 23134580 23135034 - MGP_CASTEiJ_P0053074 Gm996 protein_coding protein_coding MGP_CASTEiJ_T0013434.1 MGP_CASTEiJ_G0011597.1 mouse_genomes_project 2 168805340 168805594 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010196.1 MGP_CASTEiJ_G0008384.1 mouse_genomes_project 2 168492474 168492545 - Mir7678 miRNA miRNA MGP_CASTEiJ_T0016994.1 MGP_CASTEiJ_G0014713.1 mouse_genomes_project 2 21893512 21946836 + Gm13415 processed_transcript antisense MGP_CASTEiJ_T0016995.1 MGP_CASTEiJ_G0014713.1 mouse_genomes_project 2 21895929 21921887 + Gm13415 processed_transcript antisense MGP_CASTEiJ_T0016996.1 MGP_CASTEiJ_G0014713.1 mouse_genomes_project 2 21895943 21898359 + Gm13415 processed_transcript retained_intron MGP_CASTEiJ_T0055850.1 MGP_CASTEiJ_G0015136.1 mouse_genomes_project 2 91262491 91296703 - MGP_CASTEiJ_P0055850 Ptprj protein_coding unknown_likely_coding MGP_CASTEiJ_T0003823.1 MGP_CASTEiJ_G0003423.1 mouse_genomes_project 2 30010860 30011561 - Gm13609 antisense antisense MGP_CASTEiJ_T0058326.1 MGP_CASTEiJ_G0025872.1 mouse_genomes_project 2 156720279 156783097 + MGP_CASTEiJ_P0058326 Asxl1 protein_coding protein_coding MGP_CASTEiJ_T0058327.1 MGP_CASTEiJ_G0025872.1 mouse_genomes_project 2 156720768 156783104 + MGP_CASTEiJ_P0058327 Asxl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058328.1 MGP_CASTEiJ_G0025872.1 mouse_genomes_project 2 156722104 156732033 + Asxl1 protein_coding processed_transcript MGP_CASTEiJ_T0058329.1 MGP_CASTEiJ_G0025872.1 mouse_genomes_project 2 156722232 156770665 + Asxl1 protein_coding processed_transcript MGP_CASTEiJ_T0058330.1 MGP_CASTEiJ_G0025872.1 mouse_genomes_project 2 156771931 156775926 + Asxl1 protein_coding retained_intron MGP_CASTEiJ_T0007002.1 MGP_CASTEiJ_G0005756.1 mouse_genomes_project 2 36683081 36720485 + Gm13589 lincRNA lincRNA MGP_CASTEiJ_T0053013.1 MGP_CASTEiJ_G0024644.1 mouse_genomes_project 2 23006056 23011125 - BC029214 protein_coding processed_transcript MGP_CASTEiJ_T0053014.1 MGP_CASTEiJ_G0024644.1 mouse_genomes_project 2 23006056 23011877 - BC029214 protein_coding processed_transcript MGP_CASTEiJ_T0053021.1 MGP_CASTEiJ_G0024644.1 mouse_genomes_project 2 23010374 23011242 - BC029214 protein_coding processed_transcript MGP_CASTEiJ_T0053022.1 MGP_CASTEiJ_G0024644.1 mouse_genomes_project 2 23010406 23012019 - MGP_CASTEiJ_P0053022 BC029214 protein_coding protein_coding MGP_CASTEiJ_T0053023.1 MGP_CASTEiJ_G0024644.1 mouse_genomes_project 2 23010408 23011997 - BC029214 protein_coding processed_transcript MGP_CASTEiJ_T0053024.1 MGP_CASTEiJ_G0024644.1 mouse_genomes_project 2 23010409 23011589 - BC029214 protein_coding processed_transcript MGP_CASTEiJ_T0053025.1 MGP_CASTEiJ_G0024644.1 mouse_genomes_project 2 23010409 23011204 - BC029214 protein_coding processed_transcript MGP_CASTEiJ_T0053026.1 MGP_CASTEiJ_G0024644.1 mouse_genomes_project 2 23010455 23011933 - BC029214 protein_coding processed_transcript MGP_CASTEiJ_T0053027.1 MGP_CASTEiJ_G0024644.1 mouse_genomes_project 2 23010485 23011890 - BC029214 protein_coding processed_transcript MGP_CASTEiJ_T0053028.1 MGP_CASTEiJ_G0024644.1 mouse_genomes_project 2 23010739 23011956 - MGP_CASTEiJ_P0053028 BC029214 protein_coding protein_coding MGP_CASTEiJ_T0053029.1 MGP_CASTEiJ_G0024644.1 mouse_genomes_project 2 23010936 23011948 - BC029214 protein_coding processed_transcript MGP_CASTEiJ_T0053030.1 MGP_CASTEiJ_G0024644.1 mouse_genomes_project 2 23010952 23011852 - BC029214 protein_coding processed_transcript MGP_CASTEiJ_T0053031.1 MGP_CASTEiJ_G0024644.1 mouse_genomes_project 2 23011183 23011873 - BC029214 protein_coding processed_transcript MGP_CASTEiJ_T0052519.1 MGP_CASTEiJ_G0024559.1 mouse_genomes_project 2 11702054 11818899 + MGP_CASTEiJ_P0052519 Slc39a12 protein_coding protein_coding MGP_CASTEiJ_T0052520.1 MGP_CASTEiJ_G0024559.1 mouse_genomes_project 2 11702307 11703337 + MGP_CASTEiJ_P0052520 Slc39a12 protein_coding protein_coding MGP_CASTEiJ_T0056519.1 MGP_CASTEiJ_G0025429.1 mouse_genomes_project 2 111722127 111769446 - MGP_CASTEiJ_P0056519 Bbox1 protein_coding protein_coding MGP_CASTEiJ_T0056520.1 MGP_CASTEiJ_G0025429.1 mouse_genomes_project 2 111755367 111779174 - MGP_CASTEiJ_P0056520 Bbox1 protein_coding protein_coding MGP_CASTEiJ_T0052211.1 MGP_CASTEiJ_G0024510.1 mouse_genomes_project 2 1620517 1653778 - MGP_CASTEiJ_P0052211 Prpf18 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052212.1 MGP_CASTEiJ_G0024510.1 mouse_genomes_project 2 1620517 1653883 - MGP_CASTEiJ_P0052212 Prpf18 protein_coding protein_coding MGP_CASTEiJ_T0052213.1 MGP_CASTEiJ_G0024510.1 mouse_genomes_project 2 1622397 1653903 - Prpf18 protein_coding processed_transcript MGP_CASTEiJ_T0052214.1 MGP_CASTEiJ_G0024510.1 mouse_genomes_project 2 1622488 1653910 - MGP_CASTEiJ_P0052214 Prpf18 protein_coding protein_coding MGP_CASTEiJ_T0052215.1 MGP_CASTEiJ_G0024510.1 mouse_genomes_project 2 1638892 1653878 - MGP_CASTEiJ_P0052215 Prpf18 protein_coding protein_coding MGP_CASTEiJ_T0052216.1 MGP_CASTEiJ_G0024510.1 mouse_genomes_project 2 1638916 1653884 - Prpf18 protein_coding processed_transcript MGP_CASTEiJ_T0052217.1 MGP_CASTEiJ_G0024510.1 mouse_genomes_project 2 1643932 1653900 - Prpf18 protein_coding processed_transcript MGP_CASTEiJ_T0017046.1 MGP_CASTEiJ_G0014747.1 mouse_genomes_project 2 83989541 84009515 - Gm13684 processed_transcript processed_transcript MGP_CASTEiJ_T0055642.1 MGP_CASTEiJ_G0025144.1 mouse_genomes_project 2 86463588 86464580 + MGP_CASTEiJ_P0055642 protein_coding protein_coding MGP_CASTEiJ_T0099669.1 MGP_CASTEiJ_G0036582.1 mouse_genomes_project 2 156510327 156510430 + Gm25643 snRNA snRNA MGP_CASTEiJ_T0058891.1 MGP_CASTEiJ_G0025982.1 mouse_genomes_project 2 164280088 164283471 - MGP_CASTEiJ_P0058891 Mafb protein_coding protein_coding MGP_CASTEiJ_T0053063.1 MGP_CASTEiJ_G0024652.1 mouse_genomes_project 2 23117388 23125587 - MGP_CASTEiJ_P0053063 Mamdc4 protein_coding protein_coding MGP_CASTEiJ_T0053064.1 MGP_CASTEiJ_G0024652.1 mouse_genomes_project 2 23117410 23125629 - MGP_CASTEiJ_P0053064 Mamdc4 protein_coding protein_coding MGP_CASTEiJ_T0053065.1 MGP_CASTEiJ_G0024652.1 mouse_genomes_project 2 23117583 23124522 - MGP_CASTEiJ_P0053065 Mamdc4 protein_coding protein_coding MGP_CASTEiJ_T0053066.1 MGP_CASTEiJ_G0024652.1 mouse_genomes_project 2 23122725 23123753 - Mamdc4 protein_coding processed_transcript MGP_CASTEiJ_T0053067.1 MGP_CASTEiJ_G0024652.1 mouse_genomes_project 2 23122769 23123383 - Mamdc4 protein_coding processed_transcript MGP_CASTEiJ_T0053068.1 MGP_CASTEiJ_G0024652.1 mouse_genomes_project 2 23124441 23129538 - Mamdc4 protein_coding processed_transcript MGP_CASTEiJ_T0058052.1 MGP_CASTEiJ_G0025784.1 mouse_genomes_project 2 150551584 150557548 + MGP_CASTEiJ_P0058052 Pax1 protein_coding protein_coding MGP_CASTEiJ_T0058053.1 MGP_CASTEiJ_G0025784.1 mouse_genomes_project 2 150554658 150565127 + MGP_CASTEiJ_P0058053 Pax1 protein_coding protein_coding MGP_CASTEiJ_T0058054.1 MGP_CASTEiJ_G0025784.1 mouse_genomes_project 2 150554932 150576086 + MGP_CASTEiJ_P0058054 Pax1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058055.1 MGP_CASTEiJ_G0025784.1 mouse_genomes_project 2 150557950 150586618 + Pax1 protein_coding retained_intron MGP_CASTEiJ_T0003879.1 MGP_CASTEiJ_G0003466.1 mouse_genomes_project 2 72716214 72725461 + Sp3os antisense antisense MGP_CASTEiJ_T0003880.1 MGP_CASTEiJ_G0003466.1 mouse_genomes_project 2 72716214 72725210 + Sp3os antisense antisense MGP_CASTEiJ_T0003881.1 MGP_CASTEiJ_G0003466.1 mouse_genomes_project 2 72716309 72725314 + Sp3os antisense antisense MGP_CASTEiJ_T0003882.1 MGP_CASTEiJ_G0003466.1 mouse_genomes_project 2 72724008 72725391 + Sp3os antisense antisense MGP_CASTEiJ_T0057725.1 MGP_CASTEiJ_G0025713.1 mouse_genomes_project 2 134414429 134420623 - MGP_CASTEiJ_P0057725 Erv3 protein_coding protein_coding MGP_CASTEiJ_T0013088.1 MGP_CASTEiJ_G0011251.1 mouse_genomes_project 2 34959935 34960507 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007012.1 MGP_CASTEiJ_G0005765.1 mouse_genomes_project 2 49322682 49331036 + lincRNA lincRNA MGP_CASTEiJ_T0013018.1 MGP_CASTEiJ_G0011181.1 mouse_genomes_project 2 6766889 6767399 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013402.1 MGP_CASTEiJ_G0011565.1 mouse_genomes_project 2 156080933 156081534 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054969.1 MGP_CASTEiJ_G0024985.1 mouse_genomes_project 2 66896743 67154574 + B3galt1 protein_coding processed_transcript MGP_CASTEiJ_T0054970.1 MGP_CASTEiJ_G0024985.1 mouse_genomes_project 2 67087107 67485635 + MGP_CASTEiJ_P0054970 B3galt1 protein_coding protein_coding MGP_CASTEiJ_T0054971.1 MGP_CASTEiJ_G0024985.1 mouse_genomes_project 2 67474224 67488001 + MGP_CASTEiJ_P0054971 B3galt1 protein_coding protein_coding MGP_CASTEiJ_T0054972.1 MGP_CASTEiJ_G0024985.1 mouse_genomes_project 2 67485197 67490166 + MGP_CASTEiJ_P0054972 B3galt1 protein_coding protein_coding MGP_CASTEiJ_T0052501.1 MGP_CASTEiJ_G0024554.1 mouse_genomes_project 2 10967191 11117842 - MGP_CASTEiJ_P0052501 St8sia6 protein_coding protein_coding MGP_CASTEiJ_T0052502.1 MGP_CASTEiJ_G0024554.1 mouse_genomes_project 2 10973313 11117080 - St8sia6 protein_coding processed_transcript MGP_CASTEiJ_T0055729.1 MGP_CASTEiJ_G0025220.1 mouse_genomes_project 2 88480338 88481283 - MGP_CASTEiJ_P0055729 Olfr1155 protein_coding protein_coding MGP_CASTEiJ_T0100876.1 MGP_CASTEiJ_G0037789.1 mouse_genomes_project 2 53001276 53001409 + Gm22298 snoRNA snoRNA MGP_CASTEiJ_T0101867.1 MGP_CASTEiJ_G0038605.1 mouse_genomes_project 2 147515636 147524086 + unitary_pseudogene processed_transcript MGP_CASTEiJ_T0101868.1 MGP_CASTEiJ_G0038605.1 mouse_genomes_project 2 147520689 147558024 + unitary_pseudogene processed_transcript MGP_CASTEiJ_T0101869.1 MGP_CASTEiJ_G0038605.1 mouse_genomes_project 2 147520754 147523019 + unitary_pseudogene unitary_pseudogene MGP_CASTEiJ_T0101870.1 MGP_CASTEiJ_G0038605.1 mouse_genomes_project 2 147521470 147523026 + unitary_pseudogene processed_transcript MGP_CASTEiJ_T0058166.1 MGP_CASTEiJ_G0025820.1 mouse_genomes_project 2 154829047 154846351 + MGP_CASTEiJ_P0058166 Sdcbp2 protein_coding protein_coding MGP_CASTEiJ_T0053611.1 MGP_CASTEiJ_G0024752.1 mouse_genomes_project 2 27958621 27978424 + MGP_CASTEiJ_P0053611 Tbc1d13 protein_coding protein_coding MGP_CASTEiJ_T0053612.1 MGP_CASTEiJ_G0024752.1 mouse_genomes_project 2 27958621 27962173 + MGP_CASTEiJ_P0053612 Tbc1d13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053613.1 MGP_CASTEiJ_G0024752.1 mouse_genomes_project 2 27958647 27960028 + Tbc1d13 protein_coding retained_intron MGP_CASTEiJ_T0053614.1 MGP_CASTEiJ_G0024752.1 mouse_genomes_project 2 27958666 27962056 + Tbc1d13 protein_coding processed_transcript MGP_CASTEiJ_T0053615.1 MGP_CASTEiJ_G0024752.1 mouse_genomes_project 2 27958681 27961553 + MGP_CASTEiJ_P0053615 Tbc1d13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053616.1 MGP_CASTEiJ_G0024752.1 mouse_genomes_project 2 27958696 27962390 + Tbc1d13 protein_coding processed_transcript MGP_CASTEiJ_T0053617.1 MGP_CASTEiJ_G0024752.1 mouse_genomes_project 2 27961906 27967899 + Tbc1d13 protein_coding processed_transcript MGP_CASTEiJ_T0053618.1 MGP_CASTEiJ_G0024752.1 mouse_genomes_project 2 27967667 27972446 + Tbc1d13 protein_coding retained_intron MGP_CASTEiJ_T0102220.1 MGP_CASTEiJ_G0038945.1 mouse_genomes_project 2 86185788 86186475 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0003893.1 MGP_CASTEiJ_G0003475.1 mouse_genomes_project 2 74542585 74551677 - Hoxd3os1 antisense antisense MGP_CASTEiJ_T0003894.1 MGP_CASTEiJ_G0003475.1 mouse_genomes_project 2 74549370 74552158 - Hoxd3os1 antisense antisense MGP_CASTEiJ_T0003895.1 MGP_CASTEiJ_G0003475.1 mouse_genomes_project 2 74549520 74555643 - Hoxd3os1 antisense antisense MGP_CASTEiJ_T0003896.1 MGP_CASTEiJ_G0003475.1 mouse_genomes_project 2 74552758 74555777 - Hoxd3os1 antisense antisense MGP_CASTEiJ_T0004045.1 MGP_CASTEiJ_G0003583.1 mouse_genomes_project 2 175058318 175083997 + Bcas1os2 antisense antisense MGP_CASTEiJ_T0102247.1 MGP_CASTEiJ_G0038972.1 mouse_genomes_project 2 110926255 110952325 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013041.1 MGP_CASTEiJ_G0011204.1 mouse_genomes_project 2 15406698 15406963 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054360.1 MGP_CASTEiJ_G0024871.1 mouse_genomes_project 2 35002780 35003722 - MGP_CASTEiJ_P0054360 Olfr3 protein_coding protein_coding MGP_CASTEiJ_T0004030.1 MGP_CASTEiJ_G0003572.1 mouse_genomes_project 2 168252159 168256934 + Gm11455 antisense antisense MGP_CASTEiJ_T0003773.1 MGP_CASTEiJ_G0003383.1 mouse_genomes_project 2 7113086 7121795 + Gm13262 antisense antisense MGP_CASTEiJ_T0053246.1 MGP_CASTEiJ_G0024689.1 mouse_genomes_project 2 24209174 24260064 + MGP_CASTEiJ_P0053246 Gm20532 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054964.1 MGP_CASTEiJ_G0024982.1 mouse_genomes_project 2 65966663 66077092 - MGP_CASTEiJ_P0054964 Scn7a protein_coding protein_coding MGP_CASTEiJ_T0056792.1 MGP_CASTEiJ_G0025523.1 mouse_genomes_project 2 121160535 121171866 + MGP_CASTEiJ_P0056792 Dll4 protein_coding protein_coding MGP_CASTEiJ_T0056793.1 MGP_CASTEiJ_G0025523.1 mouse_genomes_project 2 121163288 121166961 + Dll4 protein_coding processed_transcript MGP_CASTEiJ_T0013290.1 MGP_CASTEiJ_G0011453.1 mouse_genomes_project 2 108402574 108403584 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057970.1 MGP_CASTEiJ_G0025768.1 mouse_genomes_project 2 147603779 147612301 - MGP_CASTEiJ_P0057970 Rbbp9 protein_coding protein_coding MGP_CASTEiJ_T0057971.1 MGP_CASTEiJ_G0025768.1 mouse_genomes_project 2 147605332 147612222 - Rbbp9 protein_coding processed_transcript MGP_CASTEiJ_T0056521.1 MGP_CASTEiJ_G0025430.1 mouse_genomes_project 2 111824888 111827155 - MGP_CASTEiJ_P0056521 Fibin protein_coding protein_coding MGP_CASTEiJ_T0001038.1 MGP_CASTEiJ_G0000974.1 mouse_genomes_project 2 68336260 68337749 + TEC TEC MGP_CASTEiJ_T0013199.1 MGP_CASTEiJ_G0011362.1 mouse_genomes_project 2 78736054 78736552 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099618.1 MGP_CASTEiJ_G0036531.1 mouse_genomes_project 2 2326789 2326976 - Gm23118 snRNA snRNA MGP_CASTEiJ_T0098572.1 MGP_CASTEiJ_G0035503.1 mouse_genomes_project 2 84970865 84970978 - n-R5s200 rRNA rRNA MGP_CASTEiJ_T0055724.1 MGP_CASTEiJ_G0025215.1 mouse_genomes_project 2 88351731 88352709 + MGP_CASTEiJ_P0055724 Olfr1145 protein_coding protein_coding MGP_CASTEiJ_T0013048.1 MGP_CASTEiJ_G0011211.1 mouse_genomes_project 2 16576801 16578199 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057841.1 MGP_CASTEiJ_G0025738.1 mouse_genomes_project 2 139253625 139272661 + protein_coding processed_transcript MGP_CASTEiJ_T0057842.1 MGP_CASTEiJ_G0025738.1 mouse_genomes_project 2 139253670 139260621 + protein_coding processed_transcript MGP_CASTEiJ_T0057843.1 MGP_CASTEiJ_G0025738.1 mouse_genomes_project 2 139253706 139312613 + MGP_CASTEiJ_P0057843 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057844.1 MGP_CASTEiJ_G0025738.1 mouse_genomes_project 2 139253896 139271360 + protein_coding processed_transcript MGP_CASTEiJ_T0057845.1 MGP_CASTEiJ_G0025738.1 mouse_genomes_project 2 139272664 139310103 + MGP_CASTEiJ_P0057845 protein_coding protein_coding MGP_CASTEiJ_T0057846.1 MGP_CASTEiJ_G0025738.1 mouse_genomes_project 2 139290969 139332954 + MGP_CASTEiJ_P0057846 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057847.1 MGP_CASTEiJ_G0025738.1 mouse_genomes_project 2 139295098 139323284 + MGP_CASTEiJ_P0057847 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057848.1 MGP_CASTEiJ_G0025738.1 mouse_genomes_project 2 139314095 139314891 + protein_coding processed_transcript MGP_CASTEiJ_T0057849.1 MGP_CASTEiJ_G0025738.1 mouse_genomes_project 2 139314110 139317051 + protein_coding processed_transcript MGP_CASTEiJ_T0054720.1 MGP_CASTEiJ_G0024947.1 mouse_genomes_project 2 57434407 57435370 + MGP_CASTEiJ_P0054720 Gm17409 protein_coding protein_coding MGP_CASTEiJ_T0100869.1 MGP_CASTEiJ_G0037782.1 mouse_genomes_project 2 38586345 38586471 + Gm24467 snoRNA snoRNA MGP_CASTEiJ_T0100853.1 MGP_CASTEiJ_G0037766.1 mouse_genomes_project 2 19350829 19350952 - Gm24886 snoRNA snoRNA MGP_CASTEiJ_T0055753.1 MGP_CASTEiJ_G0025243.1 mouse_genomes_project 2 89249457 89249844 - MGP_CASTEiJ_P0055753 Olfr1187-ps1 protein_coding protein_coding MGP_CASTEiJ_T0055754.1 MGP_CASTEiJ_G0025243.1 mouse_genomes_project 2 89249460 89249763 - MGP_CASTEiJ_P0055754 Olfr1187-ps1 protein_coding protein_coding MGP_CASTEiJ_T0058430.1 MGP_CASTEiJ_G0025903.1 mouse_genomes_project 2 158324547 158325308 - Gm14214 protein_coding translated_processed_pseudogene MGP_CASTEiJ_T0058431.1 MGP_CASTEiJ_G0025903.1 mouse_genomes_project 2 158324547 158325210 - MGP_CASTEiJ_P0058431 Gm14214 protein_coding protein_coding MGP_CASTEiJ_T0013411.1 MGP_CASTEiJ_G0011574.1 mouse_genomes_project 2 159140221 159140512 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100929.1 MGP_CASTEiJ_G0037842.1 mouse_genomes_project 2 168782698 168782829 + Gm24473 snoRNA snoRNA MGP_CASTEiJ_T0059505.1 MGP_CASTEiJ_G0026131.1 mouse_genomes_project 2 178187213 178199200 - MGP_CASTEiJ_P0059505 Zbp1 protein_coding protein_coding MGP_CASTEiJ_T0059506.1 MGP_CASTEiJ_G0026131.1 mouse_genomes_project 2 178187216 178199174 - Zbp1 protein_coding retained_intron MGP_CASTEiJ_T0059507.1 MGP_CASTEiJ_G0026131.1 mouse_genomes_project 2 178194096 178199187 - MGP_CASTEiJ_P0059507 Zbp1 protein_coding protein_coding MGP_CASTEiJ_T0013130.1 MGP_CASTEiJ_G0011293.1 mouse_genomes_project 2 50423926 50424161 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013334.1 MGP_CASTEiJ_G0011497.1 mouse_genomes_project 2 130950384 130950594 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056085.1 MGP_CASTEiJ_G0025347.1 mouse_genomes_project 2 92884818 92886783 + MGP_CASTEiJ_P0056085 Gm9821 protein_coding protein_coding MGP_CASTEiJ_T0010187.1 MGP_CASTEiJ_G0008375.1 mouse_genomes_project 2 159223169 159223248 + Mir499 miRNA miRNA MGP_CASTEiJ_T0013319.1 MGP_CASTEiJ_G0011482.1 mouse_genomes_project 2 121761123 121761458 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055804.1 MGP_CASTEiJ_G0025286.1 mouse_genomes_project 2 90304806 90341116 - MGP_CASTEiJ_P0055804 Olfr1243 protein_coding protein_coding MGP_CASTEiJ_T0055806.1 MGP_CASTEiJ_G0025286.1 mouse_genomes_project 2 90340801 90343807 - Olfr1243 protein_coding processed_transcript MGP_CASTEiJ_T0011163.1 MGP_CASTEiJ_G0009351.1 mouse_genomes_project 2 31949244 31949614 + Nron misc_RNA misc_RNA MGP_CASTEiJ_T0052270.1 MGP_CASTEiJ_G0024521.1 mouse_genomes_project 2 2941398 2942256 - Gm13199 protein_coding processed_transcript MGP_CASTEiJ_T0052271.1 MGP_CASTEiJ_G0024521.1 mouse_genomes_project 2 2941399 2942245 - MGP_CASTEiJ_P0052271 Gm13199 protein_coding protein_coding MGP_CASTEiJ_T0011177.1 MGP_CASTEiJ_G0009365.1 mouse_genomes_project 2 106425303 106425597 - Gm27538 misc_RNA misc_RNA MGP_CASTEiJ_T0057729.1 MGP_CASTEiJ_G0025716.1 mouse_genomes_project 2 134506884 134512182 + MGP_CASTEiJ_P0057729 protein_coding protein_coding MGP_CASTEiJ_T0057730.1 MGP_CASTEiJ_G0025716.1 mouse_genomes_project 2 134506885 134512182 + MGP_CASTEiJ_P0057730 protein_coding protein_coding MGP_CASTEiJ_T0057731.1 MGP_CASTEiJ_G0025716.1 mouse_genomes_project 2 134506885 134512182 + MGP_CASTEiJ_P0057731 protein_coding protein_coding MGP_CASTEiJ_T0057732.1 MGP_CASTEiJ_G0025716.1 mouse_genomes_project 2 134507058 134512182 + MGP_CASTEiJ_P0057732 protein_coding protein_coding MGP_CASTEiJ_T0017113.1 MGP_CASTEiJ_G0014779.1 mouse_genomes_project 2 127319305 127329028 - Gm14004 processed_transcript processed_transcript MGP_CASTEiJ_T0003941.1 MGP_CASTEiJ_G0003504.1 mouse_genomes_project 2 120810696 120814294 + Gm14089 antisense antisense MGP_CASTEiJ_T0056015.1 MGP_CASTEiJ_G0025336.1 mouse_genomes_project 2 92367564 92389355 + Lrp4 protein_coding processed_transcript MGP_CASTEiJ_T0056016.1 MGP_CASTEiJ_G0025336.1 mouse_genomes_project 2 92367564 92425585 + MGP_CASTEiJ_P0056016 Lrp4 protein_coding protein_coding MGP_CASTEiJ_T0056017.1 MGP_CASTEiJ_G0025336.1 mouse_genomes_project 2 92386320 92390985 + Lrp4 protein_coding processed_transcript MGP_CASTEiJ_T0056018.1 MGP_CASTEiJ_G0025336.1 mouse_genomes_project 2 92386383 92388910 + Lrp4 protein_coding processed_transcript MGP_CASTEiJ_T0013192.1 MGP_CASTEiJ_G0011355.1 mouse_genomes_project 2 75721459 75722225 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003763.1 MGP_CASTEiJ_G0003375.1 mouse_genomes_project 2 1443488 1452843 - Gm13175 antisense antisense MGP_CASTEiJ_T0007034.1 MGP_CASTEiJ_G0005785.1 mouse_genomes_project 2 71384239 71391836 + Gm13647 lincRNA lincRNA MGP_CASTEiJ_T0010199.1 MGP_CASTEiJ_G0008387.1 mouse_genomes_project 2 172637410 172637511 - Gm24561 miRNA miRNA MGP_CASTEiJ_T0052335.1 MGP_CASTEiJ_G0024530.1 mouse_genomes_project 2 7088013 7090685 + MGP_CASTEiJ_P0052335 4930412O13Rik protein_coding protein_coding MGP_CASTEiJ_T0052336.1 MGP_CASTEiJ_G0024530.1 mouse_genomes_project 2 7089399 7090099 + MGP_CASTEiJ_P0052336 4930412O13Rik protein_coding protein_coding MGP_CASTEiJ_T0058372.1 MGP_CASTEiJ_G0025884.1 mouse_genomes_project 2 157449766 157457586 + MGP_CASTEiJ_P0058372 Bpifa2 protein_coding protein_coding MGP_CASTEiJ_T0058373.1 MGP_CASTEiJ_G0025884.1 mouse_genomes_project 2 157449777 157455946 + MGP_CASTEiJ_P0058373 Bpifa2 protein_coding protein_coding MGP_CASTEiJ_T0058374.1 MGP_CASTEiJ_G0025884.1 mouse_genomes_project 2 157455211 157457117 + Bpifa2 protein_coding retained_intron MGP_CASTEiJ_T0058375.1 MGP_CASTEiJ_G0025884.1 mouse_genomes_project 2 157456097 157457583 + Bpifa2 protein_coding retained_intron MGP_CASTEiJ_T0013283.1 MGP_CASTEiJ_G0011446.1 mouse_genomes_project 2 106108479 106109663 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053096.1 MGP_CASTEiJ_G0024660.1 mouse_genomes_project 2 23215450 23218942 + MGP_CASTEiJ_P0053096 Lcn5 protein_coding protein_coding MGP_CASTEiJ_T0053097.1 MGP_CASTEiJ_G0024660.1 mouse_genomes_project 2 23215453 23219086 + MGP_CASTEiJ_P0053097 Lcn5 protein_coding protein_coding MGP_CASTEiJ_T0053098.1 MGP_CASTEiJ_G0024660.1 mouse_genomes_project 2 23215453 23219389 + MGP_CASTEiJ_P0053098 Lcn5 protein_coding protein_coding MGP_CASTEiJ_T0053099.1 MGP_CASTEiJ_G0024660.1 mouse_genomes_project 2 23218363 23219082 + Lcn5 protein_coding processed_transcript MGP_CASTEiJ_T0010190.1 MGP_CASTEiJ_G0008378.1 mouse_genomes_project 2 162057247 162057309 - Mir7685 miRNA miRNA MGP_CASTEiJ_T0052301.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3662151 4556226 - MGP_CASTEiJ_P0052301 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052302.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3662162 4005516 - MGP_CASTEiJ_P0052302 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052303.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3662162 3850127 - MGP_CASTEiJ_P0052303 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052304.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3662162 4005516 - MGP_CASTEiJ_P0052304 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052305.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3664293 4005516 - MGP_CASTEiJ_P0052305 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052306.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3665847 4219390 - MGP_CASTEiJ_P0052306 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052307.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3667223 4005467 - MGP_CASTEiJ_P0052307 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052308.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3667248 4219330 - MGP_CASTEiJ_P0052308 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052309.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3667248 3850127 - MGP_CASTEiJ_P0052309 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052310.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3668043 3850440 - MGP_CASTEiJ_P0052310 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052311.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3668648 3850125 - MGP_CASTEiJ_P0052311 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052312.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3668648 3850125 - MGP_CASTEiJ_P0052312 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052313.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3668742 4005466 - MGP_CASTEiJ_P0052313 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052314.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3670259 3993142 - MGP_CASTEiJ_P0052314 Celf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052315.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3670272 3717676 - Celf2 protein_coding processed_transcript MGP_CASTEiJ_T0052316.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3677283 4556119 - MGP_CASTEiJ_P0052316 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052317.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3711098 3850127 - Celf2 protein_coding retained_intron MGP_CASTEiJ_T0052318.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3729068 3744455 - Celf2 protein_coding processed_transcript MGP_CASTEiJ_T0052319.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3732655 4005148 - Celf2 protein_coding processed_transcript MGP_CASTEiJ_T0052320.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3743351 4556422 - MGP_CASTEiJ_P0052320 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052321.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3748512 4005412 - Celf2 protein_coding retained_intron MGP_CASTEiJ_T0052322.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3751839 3850728 - Celf2 protein_coding retained_intron MGP_CASTEiJ_T0052323.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3753019 3992520 - MGP_CASTEiJ_P0052323 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052324.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3787990 4005412 - Celf2 protein_coding retained_intron MGP_CASTEiJ_T0052325.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3791700 4219295 - MGP_CASTEiJ_P0052325 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052326.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 3849967 3850721 - MGP_CASTEiJ_P0052326 Celf2 protein_coding protein_coding MGP_CASTEiJ_T0052327.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 4213359 4219401 - Celf2 protein_coding processed_transcript MGP_CASTEiJ_T0052328.1 MGP_CASTEiJ_G0024528.1 mouse_genomes_project 2 4554298 4656697 - Celf2 protein_coding processed_transcript MGP_CASTEiJ_T0054007.1 MGP_CASTEiJ_G0024807.1 mouse_genomes_project 2 30615421 30616922 - MGP_CASTEiJ_P0054007 9430097D07Rik protein_coding protein_coding MGP_CASTEiJ_T0054881.1 MGP_CASTEiJ_G0024970.1 mouse_genomes_project 2 61797866 62314265 - MGP_CASTEiJ_P0054881 Kcnh7 protein_coding protein_coding MGP_CASTEiJ_T0054882.1 MGP_CASTEiJ_G0024970.1 mouse_genomes_project 2 61896364 62314274 - MGP_CASTEiJ_P0054882 Kcnh7 protein_coding protein_coding MGP_CASTEiJ_T0054883.1 MGP_CASTEiJ_G0024970.1 mouse_genomes_project 2 61896449 62314157 - MGP_CASTEiJ_P0054883 Kcnh7 protein_coding protein_coding MGP_CASTEiJ_T0054884.1 MGP_CASTEiJ_G0024970.1 mouse_genomes_project 2 62311456 62314249 - Kcnh7 protein_coding processed_transcript MGP_CASTEiJ_T0013329.1 MGP_CASTEiJ_G0011492.1 mouse_genomes_project 2 129857694 129858544 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053865.1 MGP_CASTEiJ_G0024790.1 mouse_genomes_project 2 29946614 29969876 + MGP_CASTEiJ_P0053865 Aif1l protein_coding protein_coding MGP_CASTEiJ_T0053866.1 MGP_CASTEiJ_G0024790.1 mouse_genomes_project 2 29946749 29966176 + MGP_CASTEiJ_P0053866 Aif1l protein_coding protein_coding MGP_CASTEiJ_T0053867.1 MGP_CASTEiJ_G0024790.1 mouse_genomes_project 2 29946809 29967666 + MGP_CASTEiJ_P0053867 Aif1l protein_coding protein_coding MGP_CASTEiJ_T0053868.1 MGP_CASTEiJ_G0024790.1 mouse_genomes_project 2 29946938 29966179 + Aif1l protein_coding retained_intron MGP_CASTEiJ_T0053869.1 MGP_CASTEiJ_G0024790.1 mouse_genomes_project 2 29946992 29967772 + Aif1l protein_coding retained_intron MGP_CASTEiJ_T0053870.1 MGP_CASTEiJ_G0024790.1 mouse_genomes_project 2 29956815 29967458 + Aif1l protein_coding processed_transcript MGP_CASTEiJ_T0053871.1 MGP_CASTEiJ_G0024790.1 mouse_genomes_project 2 29957796 29966175 + Aif1l protein_coding processed_transcript MGP_CASTEiJ_T0053872.1 MGP_CASTEiJ_G0024790.1 mouse_genomes_project 2 29958386 29967382 + Aif1l protein_coding retained_intron MGP_CASTEiJ_T0053873.1 MGP_CASTEiJ_G0024790.1 mouse_genomes_project 2 29959732 29967429 + Aif1l protein_coding processed_transcript MGP_CASTEiJ_T0053874.1 MGP_CASTEiJ_G0024790.1 mouse_genomes_project 2 29965748 29967589 + Aif1l protein_coding retained_intron MGP_CASTEiJ_T0057689.1 MGP_CASTEiJ_G0025708.1 mouse_genomes_project 2 133733256 133747027 + MGP_CASTEiJ_P0057689 Mavs protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057690.1 MGP_CASTEiJ_G0025708.1 mouse_genomes_project 2 133733260 133747030 + MGP_CASTEiJ_P0057690 Mavs protein_coding protein_coding MGP_CASTEiJ_T0057691.1 MGP_CASTEiJ_G0025708.1 mouse_genomes_project 2 133733298 133747030 + MGP_CASTEiJ_P0057691 Mavs protein_coding protein_coding MGP_CASTEiJ_T0057692.1 MGP_CASTEiJ_G0025708.1 mouse_genomes_project 2 133740965 133744670 + Mavs protein_coding processed_transcript MGP_CASTEiJ_T0007063.1 MGP_CASTEiJ_G0005808.1 mouse_genomes_project 2 78296972 78364801 + Gm14461 lincRNA lincRNA MGP_CASTEiJ_T0007064.1 MGP_CASTEiJ_G0005808.1 mouse_genomes_project 2 78364262 78364571 + Gm14461 lincRNA lincRNA MGP_CASTEiJ_T0054981.1 MGP_CASTEiJ_G0024987.1 mouse_genomes_project 2 67974350 68004612 + MGP_CASTEiJ_P0054981 4933409G03Rik protein_coding protein_coding MGP_CASTEiJ_T0054982.1 MGP_CASTEiJ_G0024987.1 mouse_genomes_project 2 67984450 68002936 + MGP_CASTEiJ_P0054982 4933409G03Rik protein_coding protein_coding MGP_CASTEiJ_T0010136.1 MGP_CASTEiJ_G0008324.1 mouse_genomes_project 2 67008502 67008562 + Mir7224 miRNA miRNA MGP_CASTEiJ_T0056174.1 MGP_CASTEiJ_G0025362.1 mouse_genomes_project 2 94630393 94635061 + MGP_CASTEiJ_P0056174 Gm10803 protein_coding protein_coding MGP_CASTEiJ_T0054596.1 MGP_CASTEiJ_G0024921.1 mouse_genomes_project 2 48520398 48699344 + MGP_CASTEiJ_P0054596 protein_coding protein_coding MGP_CASTEiJ_T0054597.1 MGP_CASTEiJ_G0024921.1 mouse_genomes_project 2 48520441 48679695 + protein_coding processed_transcript MGP_CASTEiJ_T0054598.1 MGP_CASTEiJ_G0024921.1 mouse_genomes_project 2 48587208 48691383 + protein_coding processed_transcript MGP_CASTEiJ_T0055453.1 MGP_CASTEiJ_G0025078.1 mouse_genomes_project 2 80559539 80613064 - MGP_CASTEiJ_P0055453 Frzb protein_coding unknown_likely_coding MGP_CASTEiJ_T0055454.1 MGP_CASTEiJ_G0025078.1 mouse_genomes_project 2 80575275 80613816 - MGP_CASTEiJ_P0055454 Frzb protein_coding protein_coding MGP_CASTEiJ_T0055455.1 MGP_CASTEiJ_G0025078.1 mouse_genomes_project 2 80576417 80604802 - Frzb protein_coding processed_transcript MGP_CASTEiJ_T0010178.1 MGP_CASTEiJ_G0008366.1 mouse_genomes_project 2 136200764 136200851 + Mir3090 miRNA miRNA MGP_CASTEiJ_T0099633.1 MGP_CASTEiJ_G0036546.1 mouse_genomes_project 2 42946887 42946996 + Gm22867 snRNA snRNA MGP_CASTEiJ_T0010102.1 MGP_CASTEiJ_G0008290.1 mouse_genomes_project 2 22992633 22992689 + Mir3087 miRNA miRNA MGP_CASTEiJ_T0016985.1 MGP_CASTEiJ_G0014708.1 mouse_genomes_project 2 11406467 11410027 - Stamos processed_transcript antisense MGP_CASTEiJ_T0016986.1 MGP_CASTEiJ_G0014708.1 mouse_genomes_project 2 11408551 11409941 - Stamos processed_transcript retained_intron MGP_CASTEiJ_T0004024.1 MGP_CASTEiJ_G0003569.1 mouse_genomes_project 2 167569248 167620245 - Hnf4aos antisense antisense MGP_CASTEiJ_T0004025.1 MGP_CASTEiJ_G0003569.1 mouse_genomes_project 2 167569248 167620245 - Hnf4aos antisense antisense MGP_CASTEiJ_T0004026.1 MGP_CASTEiJ_G0003569.1 mouse_genomes_project 2 167569675 167620217 - Hnf4aos antisense antisense MGP_CASTEiJ_T0055227.1 MGP_CASTEiJ_G0025034.1 mouse_genomes_project 2 73208939 73316501 - MGP_CASTEiJ_P0055227 Wipf1 protein_coding protein_coding MGP_CASTEiJ_T0055228.1 MGP_CASTEiJ_G0025034.1 mouse_genomes_project 2 73209369 73267887 - MGP_CASTEiJ_P0055228 Wipf1 protein_coding protein_coding MGP_CASTEiJ_T0055229.1 MGP_CASTEiJ_G0025034.1 mouse_genomes_project 2 73211472 73234796 - MGP_CASTEiJ_P0055229 Wipf1 protein_coding protein_coding MGP_CASTEiJ_T0055230.1 MGP_CASTEiJ_G0025034.1 mouse_genomes_project 2 73217574 73268582 - MGP_CASTEiJ_P0055230 Wipf1 protein_coding protein_coding MGP_CASTEiJ_T0055231.1 MGP_CASTEiJ_G0025034.1 mouse_genomes_project 2 73225861 73233527 - MGP_CASTEiJ_P0055231 Wipf1 protein_coding protein_coding MGP_CASTEiJ_T0055232.1 MGP_CASTEiJ_G0025034.1 mouse_genomes_project 2 73225921 73316246 - Wipf1 protein_coding processed_transcript MGP_CASTEiJ_T0055233.1 MGP_CASTEiJ_G0025034.1 mouse_genomes_project 2 73229036 73316149 - Wipf1 protein_coding processed_transcript MGP_CASTEiJ_T0053196.1 MGP_CASTEiJ_G0024683.1 mouse_genomes_project 2 23993312 23999826 - MGP_CASTEiJ_P0053196 Sdccag3 protein_coding protein_coding MGP_CASTEiJ_T0053197.1 MGP_CASTEiJ_G0024683.1 mouse_genomes_project 2 23993312 23999801 - MGP_CASTEiJ_P0053197 Sdccag3 protein_coding protein_coding MGP_CASTEiJ_T0053198.1 MGP_CASTEiJ_G0024683.1 mouse_genomes_project 2 23993312 23999807 - MGP_CASTEiJ_P0053198 Sdccag3 protein_coding protein_coding MGP_CASTEiJ_T0053199.1 MGP_CASTEiJ_G0024683.1 mouse_genomes_project 2 23993312 23999814 - MGP_CASTEiJ_P0053199 Sdccag3 protein_coding protein_coding MGP_CASTEiJ_T0053200.1 MGP_CASTEiJ_G0024683.1 mouse_genomes_project 2 23993313 23998091 - Sdccag3 protein_coding processed_transcript MGP_CASTEiJ_T0053201.1 MGP_CASTEiJ_G0024683.1 mouse_genomes_project 2 23994065 23995724 - Sdccag3 protein_coding processed_transcript MGP_CASTEiJ_T0053202.1 MGP_CASTEiJ_G0024683.1 mouse_genomes_project 2 23994074 23996120 - Sdccag3 protein_coding processed_transcript MGP_CASTEiJ_T0053203.1 MGP_CASTEiJ_G0024683.1 mouse_genomes_project 2 23997164 23999793 - Sdccag3 protein_coding processed_transcript MGP_CASTEiJ_T0053204.1 MGP_CASTEiJ_G0024683.1 mouse_genomes_project 2 23997164 23999816 - Sdccag3 protein_coding processed_transcript MGP_CASTEiJ_T0053205.1 MGP_CASTEiJ_G0024683.1 mouse_genomes_project 2 23997522 23999805 - Sdccag3 protein_coding processed_transcript MGP_CASTEiJ_T0053206.1 MGP_CASTEiJ_G0024683.1 mouse_genomes_project 2 23997614 23999204 - MGP_CASTEiJ_P0053206 Sdccag3 protein_coding protein_coding MGP_CASTEiJ_T0053207.1 MGP_CASTEiJ_G0024683.1 mouse_genomes_project 2 23997635 23999777 - Sdccag3 protein_coding processed_transcript MGP_CASTEiJ_T0053208.1 MGP_CASTEiJ_G0024683.1 mouse_genomes_project 2 23998065 23999675 - Sdccag3 protein_coding processed_transcript MGP_CASTEiJ_T0055494.1 MGP_CASTEiJ_G0025087.1 mouse_genomes_project 2 84069069 84132157 + MGP_CASTEiJ_P0055494 Fam171b protein_coding protein_coding MGP_CASTEiJ_T0055495.1 MGP_CASTEiJ_G0025087.1 mouse_genomes_project 2 84116661 84119039 + Fam171b protein_coding processed_transcript MGP_CASTEiJ_T0013388.1 MGP_CASTEiJ_G0011551.1 mouse_genomes_project 2 151666318 151666553 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003979.1 MGP_CASTEiJ_G0003531.1 mouse_genomes_project 2 144166545 144226292 - Macrod2os1 antisense antisense MGP_CASTEiJ_T0054923.1 MGP_CASTEiJ_G0024976.1 mouse_genomes_project 2 64822514 64963371 + MGP_CASTEiJ_P0054923 protein_coding protein_coding MGP_CASTEiJ_T0054924.1 MGP_CASTEiJ_G0024976.1 mouse_genomes_project 2 64822514 64887820 + MGP_CASTEiJ_P0054924 protein_coding protein_coding MGP_CASTEiJ_T0054925.1 MGP_CASTEiJ_G0024976.1 mouse_genomes_project 2 64822552 64824991 + protein_coding retained_intron MGP_CASTEiJ_T0054926.1 MGP_CASTEiJ_G0024976.1 mouse_genomes_project 2 64866281 64869377 + protein_coding retained_intron MGP_CASTEiJ_T0054927.1 MGP_CASTEiJ_G0024976.1 mouse_genomes_project 2 64866363 64960970 + MGP_CASTEiJ_P0054927 protein_coding protein_coding MGP_CASTEiJ_T0054928.1 MGP_CASTEiJ_G0024976.1 mouse_genomes_project 2 64867450 64960776 + MGP_CASTEiJ_P0054928 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054929.1 MGP_CASTEiJ_G0024976.1 mouse_genomes_project 2 64868026 64963371 + MGP_CASTEiJ_P0054929 protein_coding protein_coding MGP_CASTEiJ_T0054930.1 MGP_CASTEiJ_G0024976.1 mouse_genomes_project 2 64878682 64955125 + MGP_CASTEiJ_P0054930 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054931.1 MGP_CASTEiJ_G0024976.1 mouse_genomes_project 2 64879909 64881501 + protein_coding retained_intron MGP_CASTEiJ_T0054932.1 MGP_CASTEiJ_G0024976.1 mouse_genomes_project 2 64917150 64928043 + MGP_CASTEiJ_P0054932 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054933.1 MGP_CASTEiJ_G0024976.1 mouse_genomes_project 2 64917173 64927994 + MGP_CASTEiJ_P0054933 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011189.1 MGP_CASTEiJ_G0009377.1 mouse_genomes_project 2 160038201 160038417 + Gm22316 misc_RNA misc_RNA MGP_CASTEiJ_T0058672.1 MGP_CASTEiJ_G0025940.1 mouse_genomes_project 2 159848258 159906666 + MGP_CASTEiJ_P0058672 protein_coding protein_coding MGP_CASTEiJ_T0058673.1 MGP_CASTEiJ_G0025940.1 mouse_genomes_project 2 159848435 159960660 + MGP_CASTEiJ_P0058673 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058674.1 MGP_CASTEiJ_G0025940.1 mouse_genomes_project 2 159848546 159877281 + protein_coding retained_intron MGP_CASTEiJ_T0058675.1 MGP_CASTEiJ_G0025940.1 mouse_genomes_project 2 159848548 159906870 + protein_coding retained_intron MGP_CASTEiJ_T0058676.1 MGP_CASTEiJ_G0025940.1 mouse_genomes_project 2 159853886 159960758 + MGP_CASTEiJ_P0058676 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058677.1 MGP_CASTEiJ_G0025940.1 mouse_genomes_project 2 159876241 159904184 + protein_coding processed_transcript MGP_CASTEiJ_T0058678.1 MGP_CASTEiJ_G0025940.1 mouse_genomes_project 2 159915576 159924996 + protein_coding processed_transcript MGP_CASTEiJ_T0058679.1 MGP_CASTEiJ_G0025940.1 mouse_genomes_project 2 159934252 159946102 + protein_coding processed_transcript MGP_CASTEiJ_T0058680.1 MGP_CASTEiJ_G0025940.1 mouse_genomes_project 2 159947323 159952187 + protein_coding retained_intron MGP_CASTEiJ_T0058681.1 MGP_CASTEiJ_G0025940.1 mouse_genomes_project 2 159949609 159952279 + protein_coding processed_transcript MGP_CASTEiJ_T0058682.1 MGP_CASTEiJ_G0025940.1 mouse_genomes_project 2 159949985 159957919 + protein_coding processed_transcript MGP_CASTEiJ_T0059553.1 MGP_CASTEiJ_G0026143.1 mouse_genomes_project 2 179475032 179488342 + MGP_CASTEiJ_P0059553 Nelfcd protein_coding protein_coding MGP_CASTEiJ_T0059554.1 MGP_CASTEiJ_G0026143.1 mouse_genomes_project 2 179475079 179488344 + MGP_CASTEiJ_P0059554 Nelfcd protein_coding protein_coding MGP_CASTEiJ_T0059555.1 MGP_CASTEiJ_G0026143.1 mouse_genomes_project 2 179475108 179483483 + Nelfcd protein_coding processed_transcript MGP_CASTEiJ_T0059556.1 MGP_CASTEiJ_G0026143.1 mouse_genomes_project 2 179484202 179485733 + Nelfcd protein_coding retained_intron MGP_CASTEiJ_T0059557.1 MGP_CASTEiJ_G0026143.1 mouse_genomes_project 2 179485499 179486798 + Nelfcd protein_coding retained_intron MGP_CASTEiJ_T0059558.1 MGP_CASTEiJ_G0026143.1 mouse_genomes_project 2 179487211 179488247 + Nelfcd protein_coding retained_intron MGP_CASTEiJ_T0100910.1 MGP_CASTEiJ_G0037823.1 mouse_genomes_project 2 132701796 132701868 + Snord57 snoRNA snoRNA MGP_CASTEiJ_T0007132.1 MGP_CASTEiJ_G0005862.1 mouse_genomes_project 2 126404097 126409690 - 4930583P06Rik lincRNA lincRNA MGP_CASTEiJ_T0007128.1 MGP_CASTEiJ_G0005859.1 mouse_genomes_project 2 121454438 121461394 + 1700020I14Rik lincRNA lincRNA MGP_CASTEiJ_T0007129.1 MGP_CASTEiJ_G0005859.1 mouse_genomes_project 2 121454444 121468747 + 1700020I14Rik lincRNA lincRNA MGP_CASTEiJ_T0057297.1 MGP_CASTEiJ_G0025617.1 mouse_genomes_project 2 128264893 128266336 + Fgf7 protein_coding processed_transcript MGP_CASTEiJ_T0057298.1 MGP_CASTEiJ_G0025617.1 mouse_genomes_project 2 128264893 128327234 + MGP_CASTEiJ_P0057298 Fgf7 protein_coding protein_coding MGP_CASTEiJ_T0057299.1 MGP_CASTEiJ_G0025617.1 mouse_genomes_project 2 128265208 128326570 + MGP_CASTEiJ_P0057299 Fgf7 protein_coding protein_coding MGP_CASTEiJ_T0057480.1 MGP_CASTEiJ_G0025661.1 mouse_genomes_project 2 131407389 131431799 - MGP_CASTEiJ_P0057480 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057481.1 MGP_CASTEiJ_G0025661.1 mouse_genomes_project 2 131420419 131431805 - MGP_CASTEiJ_P0057481 protein_coding protein_coding MGP_CASTEiJ_T0099673.1 MGP_CASTEiJ_G0036586.1 mouse_genomes_project 2 168758507 168758614 + Gm25512 snRNA snRNA MGP_CASTEiJ_T0053109.1 MGP_CASTEiJ_G0024667.1 mouse_genomes_project 2 23350253 23353534 + MGP_CASTEiJ_P0053109 Lcn11 protein_coding protein_coding MGP_CASTEiJ_T0003813.1 MGP_CASTEiJ_G0003414.1 mouse_genomes_project 2 27667602 27669209 - 2600006K01Rik antisense antisense MGP_CASTEiJ_T0055701.1 MGP_CASTEiJ_G0025199.1 mouse_genomes_project 2 88048203 88050867 + Pramel6 protein_coding processed_transcript MGP_CASTEiJ_T0055702.1 MGP_CASTEiJ_G0025199.1 mouse_genomes_project 2 88048203 88050858 + Pramel6 protein_coding processed_transcript MGP_CASTEiJ_T0055703.1 MGP_CASTEiJ_G0025199.1 mouse_genomes_project 2 88048221 88051038 + Pramel6 protein_coding processed_transcript MGP_CASTEiJ_T0055704.1 MGP_CASTEiJ_G0025199.1 mouse_genomes_project 2 88049063 88050951 + Pramel6 protein_coding processed_transcript MGP_CASTEiJ_T0055705.1 MGP_CASTEiJ_G0025199.1 mouse_genomes_project 2 88049063 88052511 + MGP_CASTEiJ_P0055705 Pramel6 protein_coding protein_coding MGP_CASTEiJ_T0055706.1 MGP_CASTEiJ_G0025199.1 mouse_genomes_project 2 88050096 88052504 + MGP_CASTEiJ_P0055706 Pramel6 protein_coding protein_coding MGP_CASTEiJ_T0052155.1 MGP_CASTEiJ_G0024502.1 mouse_genomes_project 2 298477 325961 - MGP_CASTEiJ_P0052155 Olah protein_coding protein_coding MGP_CASTEiJ_T0052156.1 MGP_CASTEiJ_G0024502.1 mouse_genomes_project 2 298482 369774 - MGP_CASTEiJ_P0052156 Olah protein_coding protein_coding MGP_CASTEiJ_T0052157.1 MGP_CASTEiJ_G0024502.1 mouse_genomes_project 2 298512 325939 - MGP_CASTEiJ_P0052157 Olah protein_coding protein_coding MGP_CASTEiJ_T0013082.1 MGP_CASTEiJ_G0011245.1 mouse_genomes_project 2 32587841 32588200 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055876.1 MGP_CASTEiJ_G0025319.1 mouse_genomes_project 2 91694886 91713871 + MGP_CASTEiJ_P0055876 Mtch2 protein_coding protein_coding MGP_CASTEiJ_T0055877.1 MGP_CASTEiJ_G0025319.1 mouse_genomes_project 2 91694909 91712449 + MGP_CASTEiJ_P0055877 Mtch2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055878.1 MGP_CASTEiJ_G0025319.1 mouse_genomes_project 2 91694921 91696046 + Mtch2 protein_coding processed_transcript MGP_CASTEiJ_T0055879.1 MGP_CASTEiJ_G0025319.1 mouse_genomes_project 2 91694962 91713701 + MGP_CASTEiJ_P0055879 Mtch2 protein_coding protein_coding MGP_CASTEiJ_T0055880.1 MGP_CASTEiJ_G0025319.1 mouse_genomes_project 2 91695004 91713701 + MGP_CASTEiJ_P0055880 Mtch2 protein_coding protein_coding MGP_CASTEiJ_T0055881.1 MGP_CASTEiJ_G0025319.1 mouse_genomes_project 2 91695018 91712452 + Mtch2 protein_coding processed_transcript MGP_CASTEiJ_T0055882.1 MGP_CASTEiJ_G0025319.1 mouse_genomes_project 2 91699398 91702752 + Mtch2 protein_coding retained_intron MGP_CASTEiJ_T0055883.1 MGP_CASTEiJ_G0025319.1 mouse_genomes_project 2 91700033 91703869 + Mtch2 protein_coding retained_intron MGP_CASTEiJ_T0055884.1 MGP_CASTEiJ_G0025319.1 mouse_genomes_project 2 91708273 91712532 + Mtch2 protein_coding retained_intron MGP_CASTEiJ_T0055885.1 MGP_CASTEiJ_G0025319.1 mouse_genomes_project 2 91710518 91712449 + Mtch2 protein_coding retained_intron MGP_CASTEiJ_T0053032.1 MGP_CASTEiJ_G0024646.1 mouse_genomes_project 2 23017555 23021047 - MGP_CASTEiJ_P0053032 Ptgds protein_coding protein_coding MGP_CASTEiJ_T0053033.1 MGP_CASTEiJ_G0024646.1 mouse_genomes_project 2 23017555 23021251 - MGP_CASTEiJ_P0053033 Ptgds protein_coding protein_coding MGP_CASTEiJ_T0053034.1 MGP_CASTEiJ_G0024646.1 mouse_genomes_project 2 23017555 23020954 - MGP_CASTEiJ_P0053034 Ptgds protein_coding protein_coding MGP_CASTEiJ_T0053035.1 MGP_CASTEiJ_G0024646.1 mouse_genomes_project 2 23017557 23020588 - Ptgds protein_coding retained_intron MGP_CASTEiJ_T0053036.1 MGP_CASTEiJ_G0024646.1 mouse_genomes_project 2 23017558 23020348 - Ptgds protein_coding processed_transcript MGP_CASTEiJ_T0017018.1 MGP_CASTEiJ_G0014727.1 mouse_genomes_project 2 33118001 33121928 + Gm13448 processed_transcript processed_transcript MGP_CASTEiJ_T0007200.1 MGP_CASTEiJ_G0005919.1 mouse_genomes_project 2 168704180 168716936 + Gm14317 lincRNA lincRNA MGP_CASTEiJ_T0057377.1 MGP_CASTEiJ_G0025633.1 mouse_genomes_project 2 129527783 129534968 - MGP_CASTEiJ_P0057377 Ciao1 protein_coding protein_coding MGP_CASTEiJ_T0057378.1 MGP_CASTEiJ_G0025633.1 mouse_genomes_project 2 129530196 129533394 - Ciao1 protein_coding retained_intron MGP_CASTEiJ_T0057379.1 MGP_CASTEiJ_G0025633.1 mouse_genomes_project 2 129530323 129534968 - MGP_CASTEiJ_P0057379 Ciao1 protein_coding protein_coding MGP_CASTEiJ_T0057380.1 MGP_CASTEiJ_G0025633.1 mouse_genomes_project 2 129533203 129534968 - MGP_CASTEiJ_P0057380 Ciao1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056559.1 MGP_CASTEiJ_G0025461.1 mouse_genomes_project 2 113490401 113491340 - MGP_CASTEiJ_P0056559 protein_coding protein_coding MGP_CASTEiJ_T0102236.1 MGP_CASTEiJ_G0038961.1 mouse_genomes_project 2 88358553 88359475 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013251.1 MGP_CASTEiJ_G0011414.1 mouse_genomes_project 2 93895789 93896215 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017159.1 MGP_CASTEiJ_G0014800.1 mouse_genomes_project 2 162432193 162450197 - Gm14204 processed_transcript processed_transcript MGP_CASTEiJ_T0017160.1 MGP_CASTEiJ_G0014800.1 mouse_genomes_project 2 162434920 162450261 - Gm14204 processed_transcript processed_transcript MGP_CASTEiJ_T0017161.1 MGP_CASTEiJ_G0014800.1 mouse_genomes_project 2 162439765 162450144 - Gm14204 processed_transcript processed_transcript MGP_CASTEiJ_T0017162.1 MGP_CASTEiJ_G0014800.1 mouse_genomes_project 2 162439904 162450128 - Gm14204 processed_transcript processed_transcript MGP_CASTEiJ_T0058134.1 MGP_CASTEiJ_G0025814.1 mouse_genomes_project 2 154148154 154227735 - MGP_CASTEiJ_P0058134 Ninl protein_coding protein_coding MGP_CASTEiJ_T0058135.1 MGP_CASTEiJ_G0025814.1 mouse_genomes_project 2 154150671 154153294 - Ninl protein_coding processed_transcript MGP_CASTEiJ_T0058136.1 MGP_CASTEiJ_G0025814.1 mouse_genomes_project 2 154151180 154165368 - MGP_CASTEiJ_P0058136 Ninl protein_coding protein_coding MGP_CASTEiJ_T0058137.1 MGP_CASTEiJ_G0025814.1 mouse_genomes_project 2 154165066 154168289 - Ninl protein_coding retained_intron MGP_CASTEiJ_T0058138.1 MGP_CASTEiJ_G0025814.1 mouse_genomes_project 2 154172943 154186936 - MGP_CASTEiJ_P0058138 Ninl protein_coding protein_coding MGP_CASTEiJ_T0058139.1 MGP_CASTEiJ_G0025814.1 mouse_genomes_project 2 154179211 154187070 - Ninl protein_coding processed_transcript MGP_CASTEiJ_T0058140.1 MGP_CASTEiJ_G0025814.1 mouse_genomes_project 2 154179303 154227669 - Ninl protein_coding processed_transcript MGP_CASTEiJ_T0058141.1 MGP_CASTEiJ_G0025814.1 mouse_genomes_project 2 154182034 154227713 - Ninl protein_coding processed_transcript MGP_CASTEiJ_T0058142.1 MGP_CASTEiJ_G0025814.1 mouse_genomes_project 2 154189955 154268252 - MGP_CASTEiJ_P0058142 Ninl protein_coding protein_coding MGP_CASTEiJ_T0007010.1 MGP_CASTEiJ_G0005763.1 mouse_genomes_project 2 46714799 47135465 - lincRNA lincRNA MGP_CASTEiJ_T0058522.1 MGP_CASTEiJ_G0025919.1 mouse_genomes_project 2 159311290 159339413 - MGP_CASTEiJ_P0058522 Edem2 protein_coding protein_coding MGP_CASTEiJ_T0058523.1 MGP_CASTEiJ_G0025919.1 mouse_genomes_project 2 159315327 159323361 - Edem2 protein_coding processed_transcript MGP_CASTEiJ_T0058524.1 MGP_CASTEiJ_G0025919.1 mouse_genomes_project 2 159318150 159320607 - Edem2 protein_coding retained_intron MGP_CASTEiJ_T0058525.1 MGP_CASTEiJ_G0025919.1 mouse_genomes_project 2 159318615 159326420 - Edem2 protein_coding retained_intron MGP_CASTEiJ_T0054088.1 MGP_CASTEiJ_G0024821.1 mouse_genomes_project 2 30855129 30915889 - MGP_CASTEiJ_P0054088 Stxbp1 protein_coding protein_coding MGP_CASTEiJ_T0054089.1 MGP_CASTEiJ_G0024821.1 mouse_genomes_project 2 30855134 30884682 - Stxbp1 protein_coding processed_transcript MGP_CASTEiJ_T0054090.1 MGP_CASTEiJ_G0024821.1 mouse_genomes_project 2 30855488 30915846 - MGP_CASTEiJ_P0054090 Stxbp1 protein_coding protein_coding MGP_CASTEiJ_T0054091.1 MGP_CASTEiJ_G0024821.1 mouse_genomes_project 2 30884006 30885088 - Stxbp1 protein_coding retained_intron MGP_CASTEiJ_T0003936.1 MGP_CASTEiJ_G0003499.1 mouse_genomes_project 2 117202751 117228074 - Gm13977 antisense antisense MGP_CASTEiJ_T0058432.1 MGP_CASTEiJ_G0025904.1 mouse_genomes_project 2 158349893 158432886 + MGP_CASTEiJ_P0058432 Raly protein_coding protein_coding MGP_CASTEiJ_T0058433.1 MGP_CASTEiJ_G0025904.1 mouse_genomes_project 2 158349903 158428343 + MGP_CASTEiJ_P0058433 Raly protein_coding protein_coding MGP_CASTEiJ_T0058434.1 MGP_CASTEiJ_G0025904.1 mouse_genomes_project 2 158349907 158432902 + MGP_CASTEiJ_P0058434 Raly protein_coding protein_coding MGP_CASTEiJ_T0058435.1 MGP_CASTEiJ_G0025904.1 mouse_genomes_project 2 158349915 158426439 + MGP_CASTEiJ_P0058435 Raly protein_coding protein_coding MGP_CASTEiJ_T0058436.1 MGP_CASTEiJ_G0025904.1 mouse_genomes_project 2 158349930 158432885 + MGP_CASTEiJ_P0058436 Raly protein_coding protein_coding MGP_CASTEiJ_T0058437.1 MGP_CASTEiJ_G0025904.1 mouse_genomes_project 2 158349954 158432902 + MGP_CASTEiJ_P0058437 Raly protein_coding protein_coding MGP_CASTEiJ_T0058438.1 MGP_CASTEiJ_G0025904.1 mouse_genomes_project 2 158350149 158428556 + MGP_CASTEiJ_P0058438 Raly protein_coding protein_coding MGP_CASTEiJ_T0058439.1 MGP_CASTEiJ_G0025904.1 mouse_genomes_project 2 158350151 158412935 + Raly protein_coding processed_transcript MGP_CASTEiJ_T0058440.1 MGP_CASTEiJ_G0025904.1 mouse_genomes_project 2 158350166 158421840 + Raly protein_coding processed_transcript MGP_CASTEiJ_T0058441.1 MGP_CASTEiJ_G0025904.1 mouse_genomes_project 2 158350512 158421953 + Raly protein_coding processed_transcript MGP_CASTEiJ_T0100888.1 MGP_CASTEiJ_G0037801.1 mouse_genomes_project 2 92510357 92510468 + Snord67 snoRNA snoRNA MGP_CASTEiJ_T0054856.1 MGP_CASTEiJ_G0024965.1 mouse_genomes_project 2 61409107 61494525 - MGP_CASTEiJ_P0054856 Dpp4 protein_coding protein_coding MGP_CASTEiJ_T0054857.1 MGP_CASTEiJ_G0024965.1 mouse_genomes_project 2 61413458 61425419 - Dpp4 protein_coding retained_intron MGP_CASTEiJ_T0054858.1 MGP_CASTEiJ_G0024965.1 mouse_genomes_project 2 61433904 61439354 - Dpp4 protein_coding processed_transcript MGP_CASTEiJ_T0054859.1 MGP_CASTEiJ_G0024965.1 mouse_genomes_project 2 61446109 61459656 - Dpp4 protein_coding retained_intron MGP_CASTEiJ_T0054860.1 MGP_CASTEiJ_G0024965.1 mouse_genomes_project 2 61455650 61494315 - Dpp4 protein_coding retained_intron MGP_CASTEiJ_T0054861.1 MGP_CASTEiJ_G0024965.1 mouse_genomes_project 2 61489957 61494153 - Dpp4 protein_coding processed_transcript MGP_CASTEiJ_T0013325.1 MGP_CASTEiJ_G0011488.1 mouse_genomes_project 2 124264017 124264363 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056151.1 MGP_CASTEiJ_G0025359.1 mouse_genomes_project 2 94226096 94238836 + MGP_CASTEiJ_P0056151 Trp53i11 protein_coding protein_coding MGP_CASTEiJ_T0056152.1 MGP_CASTEiJ_G0025359.1 mouse_genomes_project 2 94226096 94241652 + MGP_CASTEiJ_P0056152 Trp53i11 protein_coding protein_coding MGP_CASTEiJ_T0056153.1 MGP_CASTEiJ_G0025359.1 mouse_genomes_project 2 94226109 94239366 + Trp53i11 protein_coding processed_transcript MGP_CASTEiJ_T0056154.1 MGP_CASTEiJ_G0025359.1 mouse_genomes_project 2 94226109 94240220 + Trp53i11 protein_coding processed_transcript MGP_CASTEiJ_T0056155.1 MGP_CASTEiJ_G0025359.1 mouse_genomes_project 2 94226132 94241642 + MGP_CASTEiJ_P0056155 Trp53i11 protein_coding protein_coding MGP_CASTEiJ_T0056156.1 MGP_CASTEiJ_G0025359.1 mouse_genomes_project 2 94226218 94228115 + Trp53i11 protein_coding processed_transcript MGP_CASTEiJ_T0056157.1 MGP_CASTEiJ_G0025359.1 mouse_genomes_project 2 94227739 94241650 + Trp53i11 protein_coding processed_transcript MGP_CASTEiJ_T0056158.1 MGP_CASTEiJ_G0025359.1 mouse_genomes_project 2 94238835 94240490 + Trp53i11 protein_coding processed_transcript MGP_CASTEiJ_T0010058.1 MGP_CASTEiJ_G0008246.1 mouse_genomes_project 2 7721222 7721332 + Gm23578 miRNA miRNA MGP_CASTEiJ_T0102204.1 MGP_CASTEiJ_G0038929.1 mouse_genomes_project 2 34589547 34590487 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0007069.1 MGP_CASTEiJ_G0005813.1 mouse_genomes_project 2 85538729 85548289 + Gm13715 lincRNA lincRNA MGP_CASTEiJ_T0102200.1 MGP_CASTEiJ_G0038925.1 mouse_genomes_project 2 21700272 21709072 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0007193.1 MGP_CASTEiJ_G0005912.1 mouse_genomes_project 2 165151920 165193851 + Gm14243 lincRNA lincRNA MGP_CASTEiJ_T0059662.1 MGP_CASTEiJ_G0026171.1 mouse_genomes_project 2 183394249 183400534 + MGP_CASTEiJ_P0059662 Mrgbp protein_coding protein_coding MGP_CASTEiJ_T0059663.1 MGP_CASTEiJ_G0026171.1 mouse_genomes_project 2 183395647 183401187 + MGP_CASTEiJ_P0059663 Mrgbp protein_coding protein_coding MGP_CASTEiJ_T0059664.1 MGP_CASTEiJ_G0026171.1 mouse_genomes_project 2 183395658 183401203 + Mrgbp protein_coding retained_intron MGP_CASTEiJ_T0059665.1 MGP_CASTEiJ_G0026171.1 mouse_genomes_project 2 183395661 183401203 + Mrgbp protein_coding retained_intron MGP_CASTEiJ_T0059666.1 MGP_CASTEiJ_G0026171.1 mouse_genomes_project 2 183395667 183401203 + Mrgbp protein_coding retained_intron MGP_CASTEiJ_T0059667.1 MGP_CASTEiJ_G0026171.1 mouse_genomes_project 2 183395693 183401203 + Mrgbp protein_coding retained_intron MGP_CASTEiJ_T0056545.1 MGP_CASTEiJ_G0025447.1 mouse_genomes_project 2 112968482 112969421 + MGP_CASTEiJ_P0056545 Olfr1288 protein_coding protein_coding MGP_CASTEiJ_T0003778.1 MGP_CASTEiJ_G0003387.1 mouse_genomes_project 2 12060679 12098449 - Gm10848 antisense antisense MGP_CASTEiJ_T0011190.1 MGP_CASTEiJ_G0009378.1 mouse_genomes_project 2 160550136 160550383 + Gm27651 misc_RNA misc_RNA MGP_CASTEiJ_T0058794.1 MGP_CASTEiJ_G0025962.1 mouse_genomes_project 2 161327115 161337109 - MGP_CASTEiJ_P0058794 Blcap protein_coding protein_coding MGP_CASTEiJ_T0058795.1 MGP_CASTEiJ_G0025962.1 mouse_genomes_project 2 161327115 161337085 - MGP_CASTEiJ_P0058795 Blcap protein_coding protein_coding MGP_CASTEiJ_T0058796.1 MGP_CASTEiJ_G0025962.1 mouse_genomes_project 2 161328854 161343197 - MGP_CASTEiJ_P0058796 Blcap protein_coding protein_coding MGP_CASTEiJ_T0058797.1 MGP_CASTEiJ_G0025962.1 mouse_genomes_project 2 161328940 161330760 - Blcap protein_coding processed_transcript MGP_CASTEiJ_T0058808.1 MGP_CASTEiJ_G0025962.1 mouse_genomes_project 2 161336339 161337079 - Blcap protein_coding processed_transcript MGP_CASTEiJ_T0058809.1 MGP_CASTEiJ_G0025962.1 mouse_genomes_project 2 161337622 161343197 - Blcap protein_coding processed_transcript MGP_CASTEiJ_T0007197.1 MGP_CASTEiJ_G0005916.1 mouse_genomes_project 2 166863623 166864734 - Gm14255 lincRNA lincRNA MGP_CASTEiJ_T0055817.1 MGP_CASTEiJ_G0025295.1 mouse_genomes_project 2 90577542 90579302 - MGP_CASTEiJ_P0055817 protein_coding protein_coding MGP_CASTEiJ_T0010127.1 MGP_CASTEiJ_G0008315.1 mouse_genomes_project 2 36910380 36910506 - Gm27634 miRNA miRNA MGP_CASTEiJ_T0013111.1 MGP_CASTEiJ_G0011274.1 mouse_genomes_project 2 40528192 40528425 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003973.1 MGP_CASTEiJ_G0003526.1 mouse_genomes_project 2 135469281 135470544 - Gm14104 antisense antisense MGP_CASTEiJ_T0057916.1 MGP_CASTEiJ_G0025755.1 mouse_genomes_project 2 146089064 146092313 + MGP_CASTEiJ_P0057916 Otor protein_coding protein_coding MGP_CASTEiJ_T0058764.1 MGP_CASTEiJ_G0025956.1 mouse_genomes_project 2 160875606 160937246 - MGP_CASTEiJ_P0058764 Rbl1 protein_coding protein_coding MGP_CASTEiJ_T0058765.1 MGP_CASTEiJ_G0025956.1 mouse_genomes_project 2 160897982 160937268 - Rbl1 protein_coding retained_intron MGP_CASTEiJ_T0058766.1 MGP_CASTEiJ_G0025956.1 mouse_genomes_project 2 160905760 160937260 - Rbl1 protein_coding retained_intron MGP_CASTEiJ_T0058767.1 MGP_CASTEiJ_G0025956.1 mouse_genomes_project 2 160917832 160921988 - Rbl1 protein_coding retained_intron MGP_CASTEiJ_T0053179.1 MGP_CASTEiJ_G0024681.1 mouse_genomes_project 2 23963120 23970769 - MGP_CASTEiJ_P0053179 Card9 protein_coding protein_coding MGP_CASTEiJ_T0053180.1 MGP_CASTEiJ_G0024681.1 mouse_genomes_project 2 23963131 23963732 - Card9 protein_coding processed_transcript MGP_CASTEiJ_T0053181.1 MGP_CASTEiJ_G0024681.1 mouse_genomes_project 2 23963131 23971940 - MGP_CASTEiJ_P0053181 Card9 protein_coding protein_coding MGP_CASTEiJ_T0017176.1 MGP_CASTEiJ_G0014810.1 mouse_genomes_project 2 177986204 177986657 - Gm20490 processed_transcript processed_transcript MGP_CASTEiJ_T0013169.1 MGP_CASTEiJ_G0011332.1 mouse_genomes_project 2 66158932 66160446 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059315.1 MGP_CASTEiJ_G0026082.1 mouse_genomes_project 2 171374219 171395912 + MGP_CASTEiJ_P0059315 Ddx27 protein_coding protein_coding MGP_CASTEiJ_T0059316.1 MGP_CASTEiJ_G0026082.1 mouse_genomes_project 2 171374326 171395169 + MGP_CASTEiJ_P0059316 Ddx27 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059317.1 MGP_CASTEiJ_G0026082.1 mouse_genomes_project 2 171374336 171386838 + MGP_CASTEiJ_P0059317 Ddx27 protein_coding protein_coding MGP_CASTEiJ_T0059318.1 MGP_CASTEiJ_G0026082.1 mouse_genomes_project 2 171374336 171385551 + MGP_CASTEiJ_P0059318 Ddx27 protein_coding protein_coding MGP_CASTEiJ_T0059319.1 MGP_CASTEiJ_G0026082.1 mouse_genomes_project 2 171387225 171388903 + Ddx27 protein_coding retained_intron MGP_CASTEiJ_T0059320.1 MGP_CASTEiJ_G0026082.1 mouse_genomes_project 2 171388582 171389331 + Ddx27 protein_coding retained_intron MGP_CASTEiJ_T0059321.1 MGP_CASTEiJ_G0026082.1 mouse_genomes_project 2 171394798 171395868 + Ddx27 protein_coding retained_intron MGP_CASTEiJ_T0059632.1 MGP_CASTEiJ_G0026163.1 mouse_genomes_project 2 182961155 182965952 + MGP_CASTEiJ_P0059632 Adrm1 protein_coding protein_coding MGP_CASTEiJ_T0059633.1 MGP_CASTEiJ_G0026163.1 mouse_genomes_project 2 182961265 182962109 + Adrm1 protein_coding retained_intron MGP_CASTEiJ_T0059634.1 MGP_CASTEiJ_G0026163.1 mouse_genomes_project 2 182961276 182965950 + Adrm1 protein_coding retained_intron MGP_CASTEiJ_T0059635.1 MGP_CASTEiJ_G0026163.1 mouse_genomes_project 2 182961276 182962951 + Adrm1 protein_coding retained_intron MGP_CASTEiJ_T0059636.1 MGP_CASTEiJ_G0026163.1 mouse_genomes_project 2 182961284 182965801 + Adrm1 protein_coding retained_intron MGP_CASTEiJ_T0059637.1 MGP_CASTEiJ_G0026163.1 mouse_genomes_project 2 182961329 182965952 + Adrm1 protein_coding processed_transcript MGP_CASTEiJ_T0059638.1 MGP_CASTEiJ_G0026163.1 mouse_genomes_project 2 182961823 182965950 + Adrm1 protein_coding retained_intron MGP_CASTEiJ_T0059639.1 MGP_CASTEiJ_G0026163.1 mouse_genomes_project 2 182965023 182965948 + Adrm1 protein_coding retained_intron MGP_CASTEiJ_T0058755.1 MGP_CASTEiJ_G0025955.1 mouse_genomes_project 2 160826830 160864122 - MGP_CASTEiJ_P0058755 Samhd1 protein_coding protein_coding MGP_CASTEiJ_T0058756.1 MGP_CASTEiJ_G0025955.1 mouse_genomes_project 2 160828701 160863950 - MGP_CASTEiJ_P0058756 Samhd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058757.1 MGP_CASTEiJ_G0025955.1 mouse_genomes_project 2 160828701 160863977 - MGP_CASTEiJ_P0058757 Samhd1 protein_coding protein_coding MGP_CASTEiJ_T0058758.1 MGP_CASTEiJ_G0025955.1 mouse_genomes_project 2 160830662 160864079 - MGP_CASTEiJ_P0058758 Samhd1 protein_coding protein_coding MGP_CASTEiJ_T0058759.1 MGP_CASTEiJ_G0025955.1 mouse_genomes_project 2 160830997 160839382 - Samhd1 protein_coding retained_intron MGP_CASTEiJ_T0058760.1 MGP_CASTEiJ_G0025955.1 mouse_genomes_project 2 160832420 160864063 - MGP_CASTEiJ_P0058760 Samhd1 protein_coding protein_coding MGP_CASTEiJ_T0058761.1 MGP_CASTEiJ_G0025955.1 mouse_genomes_project 2 160838070 160839381 - Samhd1 protein_coding retained_intron MGP_CASTEiJ_T0058762.1 MGP_CASTEiJ_G0025955.1 mouse_genomes_project 2 160848391 160863794 - Samhd1 protein_coding retained_intron MGP_CASTEiJ_T0058763.1 MGP_CASTEiJ_G0025955.1 mouse_genomes_project 2 160850654 160858849 - Samhd1 protein_coding retained_intron MGP_CASTEiJ_T0003767.1 MGP_CASTEiJ_G0003378.1 mouse_genomes_project 2 2974274 2979274 + Gm13267 antisense antisense MGP_CASTEiJ_T0003768.1 MGP_CASTEiJ_G0003378.1 mouse_genomes_project 2 2974364 2978025 + Gm13267 antisense antisense MGP_CASTEiJ_T0013178.1 MGP_CASTEiJ_G0011341.1 mouse_genomes_project 2 70413687 70414585 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055072.1 MGP_CASTEiJ_G0025006.1 mouse_genomes_project 2 69531147 69934206 + MGP_CASTEiJ_P0055072 Myo3b protein_coding protein_coding MGP_CASTEiJ_T0055073.1 MGP_CASTEiJ_G0025006.1 mouse_genomes_project 2 69573300 69934209 + MGP_CASTEiJ_P0055073 Myo3b protein_coding protein_coding MGP_CASTEiJ_T0055074.1 MGP_CASTEiJ_G0025006.1 mouse_genomes_project 2 69587155 69678120 + MGP_CASTEiJ_P0055074 Myo3b protein_coding protein_coding MGP_CASTEiJ_T0013010.1 MGP_CASTEiJ_G0011173.1 mouse_genomes_project 2 2207888 2208713 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013064.1 MGP_CASTEiJ_G0011227.1 mouse_genomes_project 2 22074228 22075842 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003784.1 MGP_CASTEiJ_G0003392.1 mouse_genomes_project 2 16905925 16913907 - Ptf1aos antisense antisense MGP_CASTEiJ_T0053419.1 MGP_CASTEiJ_G0024724.1 mouse_genomes_project 2 26295391 26313706 - MGP_CASTEiJ_P0053419 Gtf3c5 protein_coding protein_coding MGP_CASTEiJ_T0053420.1 MGP_CASTEiJ_G0024724.1 mouse_genomes_project 2 26295391 26313616 - MGP_CASTEiJ_P0053420 Gtf3c5 protein_coding protein_coding MGP_CASTEiJ_T0053421.1 MGP_CASTEiJ_G0024724.1 mouse_genomes_project 2 26297842 26300323 - Gtf3c5 protein_coding retained_intron MGP_CASTEiJ_T0053422.1 MGP_CASTEiJ_G0024724.1 mouse_genomes_project 2 26301387 26303065 - Gtf3c5 protein_coding retained_intron MGP_CASTEiJ_T0053423.1 MGP_CASTEiJ_G0024724.1 mouse_genomes_project 2 26308008 26313694 - Gtf3c5 protein_coding retained_intron MGP_CASTEiJ_T0053424.1 MGP_CASTEiJ_G0024724.1 mouse_genomes_project 2 26308537 26313415 - MGP_CASTEiJ_P0053424 Gtf3c5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053425.1 MGP_CASTEiJ_G0024724.1 mouse_genomes_project 2 26313431 26314178 - Gtf3c5 protein_coding processed_transcript MGP_CASTEiJ_T0052398.1 MGP_CASTEiJ_G0024542.1 mouse_genomes_project 2 8936110 8988392 + MGP_CASTEiJ_P0052398 Il2ra protein_coding protein_coding MGP_CASTEiJ_T0052399.1 MGP_CASTEiJ_G0024542.1 mouse_genomes_project 2 8936152 8941989 + MGP_CASTEiJ_P0052399 Il2ra protein_coding protein_coding MGP_CASTEiJ_T0052400.1 MGP_CASTEiJ_G0024542.1 mouse_genomes_project 2 8974694 8975196 + Il2ra protein_coding retained_intron MGP_CASTEiJ_T0059244.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170021654 170109436 - MGP_CASTEiJ_P0059244 Zmynd8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059245.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170027188 170135965 - MGP_CASTEiJ_P0059245 Zmynd8 protein_coding protein_coding MGP_CASTEiJ_T0059246.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170027188 170105978 - MGP_CASTEiJ_P0059246 Zmynd8 protein_coding protein_coding MGP_CASTEiJ_T0059247.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170027191 170133471 - MGP_CASTEiJ_P0059247 Zmynd8 protein_coding protein_coding MGP_CASTEiJ_T0059248.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170027191 170133471 - MGP_CASTEiJ_P0059248 Zmynd8 protein_coding protein_coding MGP_CASTEiJ_T0059249.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170028401 170135986 - MGP_CASTEiJ_P0059249 Zmynd8 protein_coding protein_coding MGP_CASTEiJ_T0059250.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170028428 170135862 - Zmynd8 protein_coding processed_transcript MGP_CASTEiJ_T0059251.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170028428 170127853 - MGP_CASTEiJ_P0059251 Zmynd8 protein_coding protein_coding MGP_CASTEiJ_T0059252.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170028638 170136088 - MGP_CASTEiJ_P0059252 Zmynd8 protein_coding protein_coding MGP_CASTEiJ_T0059253.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170073021 170125197 - MGP_CASTEiJ_P0059253 Zmynd8 protein_coding protein_coding MGP_CASTEiJ_T0059254.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170073080 170152301 - MGP_CASTEiJ_P0059254 Zmynd8 protein_coding protein_coding MGP_CASTEiJ_T0059255.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170079025 170105978 - Zmynd8 protein_coding processed_transcript MGP_CASTEiJ_T0059256.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170088090 170155203 - MGP_CASTEiJ_P0059256 Zmynd8 protein_coding protein_coding MGP_CASTEiJ_T0059257.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170090637 170109749 - Zmynd8 protein_coding processed_transcript MGP_CASTEiJ_T0059258.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170093604 170099941 - Zmynd8 protein_coding processed_transcript MGP_CASTEiJ_T0059259.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170099851 170126019 - Zmynd8 protein_coding processed_transcript MGP_CASTEiJ_T0059260.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170099851 170125827 - MGP_CASTEiJ_P0059260 Zmynd8 protein_coding protein_coding MGP_CASTEiJ_T0059261.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170099852 170131104 - Zmynd8 protein_coding processed_transcript MGP_CASTEiJ_T0059262.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170122433 170135423 - Zmynd8 protein_coding processed_transcript MGP_CASTEiJ_T0059263.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170124296 170135452 - Zmynd8 protein_coding retained_intron MGP_CASTEiJ_T0059264.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170124574 170125610 - Zmynd8 protein_coding retained_intron MGP_CASTEiJ_T0059265.1 MGP_CASTEiJ_G0026075.1 mouse_genomes_project 2 170124676 170135965 - Zmynd8 protein_coding retained_intron MGP_CASTEiJ_T0013381.1 MGP_CASTEiJ_G0011544.1 mouse_genomes_project 2 150314331 150315136 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017003.1 MGP_CASTEiJ_G0014717.1 mouse_genomes_project 2 24075923 24077080 + Gm13568 processed_transcript processed_transcript MGP_CASTEiJ_T0058509.1 MGP_CASTEiJ_G0025917.1 mouse_genomes_project 2 159211599 159234595 + MGP_CASTEiJ_P0058509 Myh7b protein_coding protein_coding MGP_CASTEiJ_T0058510.1 MGP_CASTEiJ_G0025917.1 mouse_genomes_project 2 159229353 159230667 + Myh7b protein_coding processed_transcript MGP_CASTEiJ_T0058511.1 MGP_CASTEiJ_G0025917.1 mouse_genomes_project 2 159233738 159234491 + Myh7b protein_coding retained_intron MGP_CASTEiJ_T0056482.1 MGP_CASTEiJ_G0025422.1 mouse_genomes_project 2 108675414 108683214 + MGP_CASTEiJ_P0056482 Kcna4 protein_coding protein_coding MGP_CASTEiJ_T0056483.1 MGP_CASTEiJ_G0025422.1 mouse_genomes_project 2 108676169 108679184 + Kcna4 protein_coding processed_transcript MGP_CASTEiJ_T0011164.1 MGP_CASTEiJ_G0009352.1 mouse_genomes_project 2 34348519 34348662 - Gm27953 misc_RNA misc_RNA MGP_CASTEiJ_T0017052.1 MGP_CASTEiJ_G0014753.1 mouse_genomes_project 2 89517368 89520752 - Gm13760 processed_transcript processed_transcript MGP_CASTEiJ_T0017053.1 MGP_CASTEiJ_G0014753.1 mouse_genomes_project 2 89517678 89521224 - Gm13760 processed_transcript processed_transcript MGP_CASTEiJ_T0013311.1 MGP_CASTEiJ_G0011474.1 mouse_genomes_project 2 116654489 116655392 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055137.1 MGP_CASTEiJ_G0025017.1 mouse_genomes_project 2 70851730 70953979 - MGP_CASTEiJ_P0055137 Slc25a12 protein_coding protein_coding MGP_CASTEiJ_T0055138.1 MGP_CASTEiJ_G0025017.1 mouse_genomes_project 2 70855382 70953763 - MGP_CASTEiJ_P0055138 Slc25a12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055139.1 MGP_CASTEiJ_G0025017.1 mouse_genomes_project 2 70855769 70875330 - Slc25a12 protein_coding processed_transcript MGP_CASTEiJ_T0055140.1 MGP_CASTEiJ_G0025017.1 mouse_genomes_project 2 70860254 70863488 - Slc25a12 protein_coding retained_intron MGP_CASTEiJ_T0055141.1 MGP_CASTEiJ_G0025017.1 mouse_genomes_project 2 70892960 70912705 - Slc25a12 protein_coding processed_transcript MGP_CASTEiJ_T0055142.1 MGP_CASTEiJ_G0025017.1 mouse_genomes_project 2 70913600 70929964 - Slc25a12 protein_coding processed_transcript MGP_CASTEiJ_T0055143.1 MGP_CASTEiJ_G0025017.1 mouse_genomes_project 2 70929821 70933741 - Slc25a12 protein_coding processed_transcript MGP_CASTEiJ_T0056547.1 MGP_CASTEiJ_G0025449.1 mouse_genomes_project 2 112979713 112980346 - MGP_CASTEiJ_P0056547 protein_coding protein_coding MGP_CASTEiJ_T0055626.1 MGP_CASTEiJ_G0025129.1 mouse_genomes_project 2 86151147 86152065 + MGP_CASTEiJ_P0055626 Olfr1014 protein_coding protein_coding MGP_CASTEiJ_T0053831.1 MGP_CASTEiJ_G0024783.1 mouse_genomes_project 2 29540694 29585588 + MGP_CASTEiJ_P0053831 Fubp3 protein_coding protein_coding MGP_CASTEiJ_T0053832.1 MGP_CASTEiJ_G0024783.1 mouse_genomes_project 2 29540836 29563303 + MGP_CASTEiJ_P0053832 Fubp3 protein_coding protein_coding MGP_CASTEiJ_T0053833.1 MGP_CASTEiJ_G0024783.1 mouse_genomes_project 2 29540837 29552947 + Fubp3 protein_coding retained_intron MGP_CASTEiJ_T0053834.1 MGP_CASTEiJ_G0024783.1 mouse_genomes_project 2 29540859 29566594 + MGP_CASTEiJ_P0053834 Fubp3 protein_coding protein_coding MGP_CASTEiJ_T0053835.1 MGP_CASTEiJ_G0024783.1 mouse_genomes_project 2 29540862 29585581 + MGP_CASTEiJ_P0053835 Fubp3 protein_coding protein_coding MGP_CASTEiJ_T0053836.1 MGP_CASTEiJ_G0024783.1 mouse_genomes_project 2 29540872 29566580 + MGP_CASTEiJ_P0053836 Fubp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053837.1 MGP_CASTEiJ_G0024783.1 mouse_genomes_project 2 29571302 29581131 + MGP_CASTEiJ_P0053837 Fubp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053838.1 MGP_CASTEiJ_G0024783.1 mouse_genomes_project 2 29572737 29583956 + MGP_CASTEiJ_P0053838 Fubp3 protein_coding protein_coding MGP_CASTEiJ_T0053839.1 MGP_CASTEiJ_G0024783.1 mouse_genomes_project 2 29580554 29584739 + MGP_CASTEiJ_P0053839 Fubp3 protein_coding protein_coding MGP_CASTEiJ_T0053840.1 MGP_CASTEiJ_G0024783.1 mouse_genomes_project 2 29582784 29585580 + MGP_CASTEiJ_P0053840 Fubp3 protein_coding protein_coding MGP_CASTEiJ_T0053841.1 MGP_CASTEiJ_G0024783.1 mouse_genomes_project 2 29583202 29585582 + Fubp3 protein_coding retained_intron MGP_CASTEiJ_T0099642.1 MGP_CASTEiJ_G0036555.1 mouse_genomes_project 2 79458610 79458713 + Gm22606 snRNA snRNA MGP_CASTEiJ_T0056512.1 MGP_CASTEiJ_G0025428.1 mouse_genomes_project 2 111495581 111538148 + MGP_CASTEiJ_P0056512 Ccdc34 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056513.1 MGP_CASTEiJ_G0025428.1 mouse_genomes_project 2 111495601 111520189 + MGP_CASTEiJ_P0056513 Ccdc34 protein_coding protein_coding MGP_CASTEiJ_T0056514.1 MGP_CASTEiJ_G0025428.1 mouse_genomes_project 2 111495746 111641027 + MGP_CASTEiJ_P0056514 Ccdc34 protein_coding protein_coding MGP_CASTEiJ_T0056515.1 MGP_CASTEiJ_G0025428.1 mouse_genomes_project 2 111495764 111520195 + MGP_CASTEiJ_P0056515 Ccdc34 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056516.1 MGP_CASTEiJ_G0025428.1 mouse_genomes_project 2 111499761 111516137 + Ccdc34 protein_coding retained_intron MGP_CASTEiJ_T0056517.1 MGP_CASTEiJ_G0025428.1 mouse_genomes_project 2 111512901 111519722 + Ccdc34 protein_coding retained_intron MGP_CASTEiJ_T0056518.1 MGP_CASTEiJ_G0025428.1 mouse_genomes_project 2 111515770 111519537 + Ccdc34 protein_coding retained_intron MGP_CASTEiJ_T0057597.1 MGP_CASTEiJ_G0025692.1 mouse_genomes_project 2 133073227 133078418 - MGP_CASTEiJ_P0057597 Lzts3 protein_coding protein_coding MGP_CASTEiJ_T0057598.1 MGP_CASTEiJ_G0025692.1 mouse_genomes_project 2 133073228 133078418 - MGP_CASTEiJ_P0057598 Lzts3 protein_coding protein_coding MGP_CASTEiJ_T0057599.1 MGP_CASTEiJ_G0025692.1 mouse_genomes_project 2 133073231 133086343 - MGP_CASTEiJ_P0057599 Lzts3 protein_coding protein_coding MGP_CASTEiJ_T0006953.1 MGP_CASTEiJ_G0005720.1 mouse_genomes_project 2 8290173 8315142 + Gm13264 lincRNA lincRNA MGP_CASTEiJ_T0056544.1 MGP_CASTEiJ_G0025446.1 mouse_genomes_project 2 112921518 112922021 + MGP_CASTEiJ_P0056544 protein_coding protein_coding MGP_CASTEiJ_T0007146.1 MGP_CASTEiJ_G0005873.1 mouse_genomes_project 2 135581460 135582823 + Gm14102 lincRNA lincRNA MGP_CASTEiJ_T0059154.1 MGP_CASTEiJ_G0026057.1 mouse_genomes_project 2 169057256 169062772 + Pcif1 protein_coding retained_intron MGP_CASTEiJ_T0059155.1 MGP_CASTEiJ_G0026057.1 mouse_genomes_project 2 169057317 169074061 + MGP_CASTEiJ_P0059155 Pcif1 protein_coding protein_coding MGP_CASTEiJ_T0059156.1 MGP_CASTEiJ_G0026057.1 mouse_genomes_project 2 169058026 169062683 + Pcif1 protein_coding retained_intron MGP_CASTEiJ_T0059157.1 MGP_CASTEiJ_G0026057.1 mouse_genomes_project 2 169063546 169064308 + Pcif1 protein_coding retained_intron MGP_CASTEiJ_T0058230.1 MGP_CASTEiJ_G0025840.1 mouse_genomes_project 2 155765292 155775035 - MGP_CASTEiJ_P0058230 Defb23 protein_coding protein_coding MGP_CASTEiJ_T0055731.1 MGP_CASTEiJ_G0025222.1 mouse_genomes_project 2 88499603 88500542 - MGP_CASTEiJ_P0055731 Olfr1157 protein_coding protein_coding MGP_CASTEiJ_T0057992.1 MGP_CASTEiJ_G0025774.1 mouse_genomes_project 2 148881815 148924800 + MGP_CASTEiJ_P0057992 Rin2 protein_coding protein_coding MGP_CASTEiJ_T0057993.1 MGP_CASTEiJ_G0025774.1 mouse_genomes_project 2 148883160 148995568 + MGP_CASTEiJ_P0057993 Rin2 protein_coding protein_coding MGP_CASTEiJ_T0057994.1 MGP_CASTEiJ_G0025774.1 mouse_genomes_project 2 148883296 148995568 + MGP_CASTEiJ_P0057994 Rin2 protein_coding protein_coding MGP_CASTEiJ_T0057995.1 MGP_CASTEiJ_G0025774.1 mouse_genomes_project 2 148883342 148925202 + MGP_CASTEiJ_P0057995 Rin2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057996.1 MGP_CASTEiJ_G0025774.1 mouse_genomes_project 2 148924647 148947378 + Rin2 protein_coding processed_transcript MGP_CASTEiJ_T0057997.1 MGP_CASTEiJ_G0025774.1 mouse_genomes_project 2 148924786 148947647 + Rin2 protein_coding processed_transcript MGP_CASTEiJ_T0057998.1 MGP_CASTEiJ_G0025774.1 mouse_genomes_project 2 148965218 148983176 + Rin2 protein_coding processed_transcript MGP_CASTEiJ_T0010141.1 MGP_CASTEiJ_G0008329.1 mouse_genomes_project 2 76251997 76252111 + Gm44337 miRNA miRNA MGP_CASTEiJ_T0007046.1 MGP_CASTEiJ_G0005794.1 mouse_genomes_project 2 73955077 73969842 + Gm13667 lincRNA lincRNA MGP_CASTEiJ_T0007236.1 MGP_CASTEiJ_G0005949.1 mouse_genomes_project 2 175407105 175417240 - Gm14264 lincRNA lincRNA MGP_CASTEiJ_T0004064.1 MGP_CASTEiJ_G0003596.1 mouse_genomes_project 2 183803514 183817693 + Gm14341 antisense antisense MGP_CASTEiJ_T0056572.1 MGP_CASTEiJ_G0025470.1 mouse_genomes_project 2 113832650 113907308 + MGP_CASTEiJ_P0056572 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0003770.1 MGP_CASTEiJ_G0003380.1 mouse_genomes_project 2 3545321 3549565 - Gm13388 antisense antisense MGP_CASTEiJ_T0010144.1 MGP_CASTEiJ_G0008332.1 mouse_genomes_project 2 80809473 80809559 - Mir684-1 miRNA miRNA MGP_CASTEiJ_T0007218.1 MGP_CASTEiJ_G0005933.1 mouse_genomes_project 2 172252980 172261187 - 1200007C13Rik lincRNA lincRNA MGP_CASTEiJ_T0010078.1 MGP_CASTEiJ_G0008266.1 mouse_genomes_project 2 7747816 7747915 + Gm26092 miRNA miRNA MGP_CASTEiJ_T0057435.1 MGP_CASTEiJ_G0025649.1 mouse_genomes_project 2 130090664 130123606 - MGP_CASTEiJ_P0057435 Bub1 protein_coding protein_coding MGP_CASTEiJ_T0057436.1 MGP_CASTEiJ_G0025649.1 mouse_genomes_project 2 130094047 130094810 - Bub1 protein_coding retained_intron MGP_CASTEiJ_T0057437.1 MGP_CASTEiJ_G0025649.1 mouse_genomes_project 2 130099321 130104709 - Bub1 protein_coding processed_transcript MGP_CASTEiJ_T0057438.1 MGP_CASTEiJ_G0025649.1 mouse_genomes_project 2 130101379 130105759 - Bub1 protein_coding processed_transcript MGP_CASTEiJ_T0057439.1 MGP_CASTEiJ_G0025649.1 mouse_genomes_project 2 130115441 130123545 - Bub1 protein_coding retained_intron MGP_CASTEiJ_T0053792.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 28959882 29081204 - MGP_CASTEiJ_P0053792 Fnbp1 protein_coding protein_coding MGP_CASTEiJ_T0053793.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 28959883 29034449 - MGP_CASTEiJ_P0053793 Fnbp1 protein_coding protein_coding MGP_CASTEiJ_T0053794.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 28959883 29081410 - MGP_CASTEiJ_P0053794 Fnbp1 protein_coding protein_coding MGP_CASTEiJ_T0053795.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 28959884 29081398 - MGP_CASTEiJ_P0053795 Fnbp1 protein_coding protein_coding MGP_CASTEiJ_T0053796.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 28960439 29081359 - MGP_CASTEiJ_P0053796 Fnbp1 protein_coding protein_coding MGP_CASTEiJ_T0053797.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 28961839 29034449 - Fnbp1 protein_coding processed_transcript MGP_CASTEiJ_T0053798.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 28971298 29043530 - MGP_CASTEiJ_P0053798 Fnbp1 protein_coding protein_coding MGP_CASTEiJ_T0053799.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 28971603 29081204 - MGP_CASTEiJ_P0053799 Fnbp1 protein_coding protein_coding MGP_CASTEiJ_T0053800.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 28971614 29081204 - MGP_CASTEiJ_P0053800 Fnbp1 protein_coding protein_coding MGP_CASTEiJ_T0053801.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 28971614 29081204 - MGP_CASTEiJ_P0053801 Fnbp1 protein_coding protein_coding MGP_CASTEiJ_T0053802.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 28971614 29081204 - MGP_CASTEiJ_P0053802 Fnbp1 protein_coding protein_coding MGP_CASTEiJ_T0053803.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 28971695 28993547 - MGP_CASTEiJ_P0053803 Fnbp1 protein_coding protein_coding MGP_CASTEiJ_T0053804.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 28974155 29081231 - MGP_CASTEiJ_P0053804 Fnbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0053805.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 28991340 29081341 - MGP_CASTEiJ_P0053805 Fnbp1 protein_coding protein_coding MGP_CASTEiJ_T0053806.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 28993669 29081357 - MGP_CASTEiJ_P0053806 Fnbp1 protein_coding protein_coding MGP_CASTEiJ_T0053807.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 28997075 29054369 - MGP_CASTEiJ_P0053807 Fnbp1 protein_coding protein_coding MGP_CASTEiJ_T0053808.1 MGP_CASTEiJ_G0024778.1 mouse_genomes_project 2 29034039 29043628 - Fnbp1 protein_coding processed_transcript MGP_CASTEiJ_T0055835.1 MGP_CASTEiJ_G0025305.1 mouse_genomes_project 2 90822766 90831937 + MGP_CASTEiJ_P0055835 Olfr1262 protein_coding protein_coding MGP_CASTEiJ_T0055836.1 MGP_CASTEiJ_G0025305.1 mouse_genomes_project 2 90822791 90831741 + MGP_CASTEiJ_P0055836 Olfr1262 protein_coding protein_coding MGP_CASTEiJ_T0055838.1 MGP_CASTEiJ_G0025305.1 mouse_genomes_project 2 90831022 90831937 + MGP_CASTEiJ_P0055838 Olfr1262 protein_coding protein_coding MGP_CASTEiJ_T0003777.1 MGP_CASTEiJ_G0003386.1 mouse_genomes_project 2 10987650 10989567 + Gm37126 antisense antisense MGP_CASTEiJ_T0098719.1 MGP_CASTEiJ_G0035650.1 mouse_genomes_project 2 133917553 133917856 - Gm22902 ribozyme ribozyme MGP_CASTEiJ_T0053675.1 MGP_CASTEiJ_G0024763.1 mouse_genomes_project 2 28211163 28235814 + MGP_CASTEiJ_P0053675 Fam73b protein_coding protein_coding MGP_CASTEiJ_T0053676.1 MGP_CASTEiJ_G0024763.1 mouse_genomes_project 2 28211175 28215635 + Fam73b protein_coding processed_transcript MGP_CASTEiJ_T0053677.1 MGP_CASTEiJ_G0024763.1 mouse_genomes_project 2 28211184 28225970 + MGP_CASTEiJ_P0053677 Fam73b protein_coding protein_coding MGP_CASTEiJ_T0053678.1 MGP_CASTEiJ_G0024763.1 mouse_genomes_project 2 28211196 28216242 + Fam73b protein_coding retained_intron MGP_CASTEiJ_T0053679.1 MGP_CASTEiJ_G0024763.1 mouse_genomes_project 2 28211223 28217343 + MGP_CASTEiJ_P0053679 Fam73b protein_coding protein_coding MGP_CASTEiJ_T0053680.1 MGP_CASTEiJ_G0024763.1 mouse_genomes_project 2 28211226 28235812 + MGP_CASTEiJ_P0053680 Fam73b protein_coding protein_coding MGP_CASTEiJ_T0053681.1 MGP_CASTEiJ_G0024763.1 mouse_genomes_project 2 28214620 28216243 + Fam73b protein_coding retained_intron MGP_CASTEiJ_T0053682.1 MGP_CASTEiJ_G0024763.1 mouse_genomes_project 2 28215352 28218140 + MGP_CASTEiJ_P0053682 Fam73b protein_coding protein_coding MGP_CASTEiJ_T0053683.1 MGP_CASTEiJ_G0024763.1 mouse_genomes_project 2 28218219 28223572 + Fam73b protein_coding retained_intron MGP_CASTEiJ_T0053684.1 MGP_CASTEiJ_G0024763.1 mouse_genomes_project 2 28225105 28232284 + Fam73b protein_coding retained_intron MGP_CASTEiJ_T0053685.1 MGP_CASTEiJ_G0024763.1 mouse_genomes_project 2 28231989 28234378 + MGP_CASTEiJ_P0053685 Fam73b protein_coding protein_coding MGP_CASTEiJ_T0053686.1 MGP_CASTEiJ_G0024763.1 mouse_genomes_project 2 28232220 28234484 + MGP_CASTEiJ_P0053686 Fam73b protein_coding protein_coding MGP_CASTEiJ_T0054816.1 MGP_CASTEiJ_G0024960.1 mouse_genomes_project 2 59770247 59993625 - MGP_CASTEiJ_P0054816 Rbms1 protein_coding protein_coding MGP_CASTEiJ_T0054817.1 MGP_CASTEiJ_G0024960.1 mouse_genomes_project 2 59773947 59905985 - MGP_CASTEiJ_P0054817 Rbms1 protein_coding protein_coding MGP_CASTEiJ_T0054818.1 MGP_CASTEiJ_G0024960.1 mouse_genomes_project 2 59774204 59905920 - MGP_CASTEiJ_P0054818 Rbms1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054819.1 MGP_CASTEiJ_G0024960.1 mouse_genomes_project 2 59774717 59906017 - MGP_CASTEiJ_P0054819 Rbms1 protein_coding protein_coding MGP_CASTEiJ_T0054820.1 MGP_CASTEiJ_G0024960.1 mouse_genomes_project 2 59775548 59784315 - Rbms1 protein_coding processed_transcript MGP_CASTEiJ_T0054821.1 MGP_CASTEiJ_G0024960.1 mouse_genomes_project 2 59777411 59802905 - Rbms1 protein_coding processed_transcript MGP_CASTEiJ_T0054822.1 MGP_CASTEiJ_G0024960.1 mouse_genomes_project 2 59867240 59913881 - Rbms1 protein_coding processed_transcript MGP_CASTEiJ_T0054823.1 MGP_CASTEiJ_G0024960.1 mouse_genomes_project 2 59867240 59914856 - Rbms1 protein_coding processed_transcript MGP_CASTEiJ_T0054824.1 MGP_CASTEiJ_G0024960.1 mouse_genomes_project 2 59914037 59914334 - Rbms1 protein_coding processed_transcript MGP_CASTEiJ_T0054825.1 MGP_CASTEiJ_G0024960.1 mouse_genomes_project 2 59914249 59914822 - Rbms1 protein_coding processed_transcript MGP_CASTEiJ_T0055277.1 MGP_CASTEiJ_G0025043.1 mouse_genomes_project 2 74516544 74526529 + Hoxd11 protein_coding processed_transcript MGP_CASTEiJ_T0055278.1 MGP_CASTEiJ_G0025043.1 mouse_genomes_project 2 74521881 74523731 + MGP_CASTEiJ_P0055278 Hoxd11 protein_coding protein_coding MGP_CASTEiJ_T0055940.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002805 92050426 - MGP_CASTEiJ_P0055940 Madd protein_coding protein_coding MGP_CASTEiJ_T0055941.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002805 92054910 - MGP_CASTEiJ_P0055941 Madd protein_coding protein_coding MGP_CASTEiJ_T0055942.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002805 92054910 - MGP_CASTEiJ_P0055942 Madd protein_coding protein_coding MGP_CASTEiJ_T0055943.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002805 92053959 - MGP_CASTEiJ_P0055943 Madd protein_coding protein_coding MGP_CASTEiJ_T0055944.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002805 92050421 - MGP_CASTEiJ_P0055944 Madd protein_coding protein_coding MGP_CASTEiJ_T0055945.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002805 92054910 - MGP_CASTEiJ_P0055945 Madd protein_coding protein_coding MGP_CASTEiJ_T0055946.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002805 92053999 - MGP_CASTEiJ_P0055946 Madd protein_coding protein_coding MGP_CASTEiJ_T0055947.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002805 92050415 - MGP_CASTEiJ_P0055947 Madd protein_coding protein_coding MGP_CASTEiJ_T0055948.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002805 92054910 - MGP_CASTEiJ_P0055948 Madd protein_coding protein_coding MGP_CASTEiJ_T0055949.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002805 92054000 - MGP_CASTEiJ_P0055949 Madd protein_coding protein_coding MGP_CASTEiJ_T0055950.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002805 92054910 - MGP_CASTEiJ_P0055950 Madd protein_coding protein_coding MGP_CASTEiJ_T0055951.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002805 92050417 - MGP_CASTEiJ_P0055951 Madd protein_coding protein_coding MGP_CASTEiJ_T0055952.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002806 92054910 - Madd protein_coding processed_transcript MGP_CASTEiJ_T0055953.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002806 92054910 - Madd protein_coding processed_transcript MGP_CASTEiJ_T0055954.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002806 92054910 - Madd protein_coding processed_transcript MGP_CASTEiJ_T0055955.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002806 92054910 - Madd protein_coding processed_transcript MGP_CASTEiJ_T0055956.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002806 92054910 - Madd protein_coding processed_transcript MGP_CASTEiJ_T0055957.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92002806 92054910 - MGP_CASTEiJ_P0055957 Madd protein_coding protein_coding MGP_CASTEiJ_T0055958.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92003777 92004684 - Madd protein_coding retained_intron MGP_CASTEiJ_T0055959.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92008454 92022128 - Madd protein_coding retained_intron MGP_CASTEiJ_T0055960.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92008683 92019676 - Madd protein_coding retained_intron MGP_CASTEiJ_T0055961.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92019331 92021972 - Madd protein_coding retained_intron MGP_CASTEiJ_T0055962.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92022735 92029471 - Madd protein_coding retained_intron MGP_CASTEiJ_T0055963.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92030159 92054137 - Madd protein_coding retained_intron MGP_CASTEiJ_T0055964.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92030506 92054158 - MGP_CASTEiJ_P0055964 Madd protein_coding protein_coding MGP_CASTEiJ_T0055965.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92036659 92045709 - MGP_CASTEiJ_P0055965 Madd protein_coding protein_coding MGP_CASTEiJ_T0055966.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92048736 92054929 - Madd protein_coding retained_intron MGP_CASTEiJ_T0055967.1 MGP_CASTEiJ_G0025329.1 mouse_genomes_project 2 92049548 92054150 - Madd protein_coding processed_transcript MGP_CASTEiJ_T0003785.1 MGP_CASTEiJ_G0003393.1 mouse_genomes_project 2 17111599 17114545 - Gm13348 antisense antisense MGP_CASTEiJ_T0013067.1 MGP_CASTEiJ_G0011230.1 mouse_genomes_project 2 23096378 23096618 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010068.1 MGP_CASTEiJ_G0008256.1 mouse_genomes_project 2 7742193 7742304 + miRNA miRNA MGP_CASTEiJ_T0057536.1 MGP_CASTEiJ_G0025676.1 mouse_genomes_project 2 132610933 132688225 + MGP_CASTEiJ_P0057536 Tmc2 protein_coding protein_coding MGP_CASTEiJ_T0057537.1 MGP_CASTEiJ_G0025676.1 mouse_genomes_project 2 132612275 132687997 + MGP_CASTEiJ_P0057537 Tmc2 protein_coding protein_coding MGP_CASTEiJ_T0054965.1 MGP_CASTEiJ_G0024983.1 mouse_genomes_project 2 66758184 66758538 - MGP_CASTEiJ_P0054965 Gm26727 protein_coding protein_coding MGP_CASTEiJ_T0013341.1 MGP_CASTEiJ_G0011504.1 mouse_genomes_project 2 133468753 133469388 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102253.1 MGP_CASTEiJ_G0038978.1 mouse_genomes_project 2 152194730 152198705 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099665.1 MGP_CASTEiJ_G0036578.1 mouse_genomes_project 2 142425067 142425171 + Gm27385 snRNA snRNA MGP_CASTEiJ_T0010175.1 MGP_CASTEiJ_G0008363.1 mouse_genomes_project 2 132419163 132419280 - Mir6339 miRNA miRNA MGP_CASTEiJ_T0013306.1 MGP_CASTEiJ_G0011469.1 mouse_genomes_project 2 113596673 113604157 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007225.1 MGP_CASTEiJ_G0005940.1 mouse_genomes_project 2 173586307 173587670 + Gm9873 lincRNA lincRNA MGP_CASTEiJ_T0007226.1 MGP_CASTEiJ_G0005940.1 mouse_genomes_project 2 173586553 173587651 + Gm9873 lincRNA lincRNA MGP_CASTEiJ_T0053113.1 MGP_CASTEiJ_G0024670.1 mouse_genomes_project 2 23420202 23424432 - MGP_CASTEiJ_P0053113 Sohlh1 protein_coding protein_coding MGP_CASTEiJ_T0100892.1 MGP_CASTEiJ_G0037805.1 mouse_genomes_project 2 98349436 98349565 + Gm22313 snoRNA snoRNA MGP_CASTEiJ_T0011176.1 MGP_CASTEiJ_G0009364.1 mouse_genomes_project 2 106424912 106425172 - Gm27715 misc_RNA misc_RNA MGP_CASTEiJ_T0053727.1 MGP_CASTEiJ_G0024769.1 mouse_genomes_project 2 28690936 28699799 - 1700001O22Rik protein_coding processed_transcript MGP_CASTEiJ_T0053728.1 MGP_CASTEiJ_G0024769.1 mouse_genomes_project 2 28691468 28697858 - MGP_CASTEiJ_P0053728 1700001O22Rik protein_coding protein_coding MGP_CASTEiJ_T0053729.1 MGP_CASTEiJ_G0024769.1 mouse_genomes_project 2 28691635 28692834 - 1700001O22Rik protein_coding processed_transcript MGP_CASTEiJ_T0053730.1 MGP_CASTEiJ_G0024769.1 mouse_genomes_project 2 28691730 28699825 - 1700001O22Rik protein_coding processed_transcript MGP_CASTEiJ_T0053731.1 MGP_CASTEiJ_G0024769.1 mouse_genomes_project 2 28691733 28699808 - 1700001O22Rik protein_coding processed_transcript MGP_CASTEiJ_T0053732.1 MGP_CASTEiJ_G0024769.1 mouse_genomes_project 2 28691740 28697161 - 1700001O22Rik protein_coding processed_transcript MGP_CASTEiJ_T0053733.1 MGP_CASTEiJ_G0024769.1 mouse_genomes_project 2 28691747 28699821 - 1700001O22Rik protein_coding processed_transcript MGP_CASTEiJ_T0053734.1 MGP_CASTEiJ_G0024769.1 mouse_genomes_project 2 28691771 28699807 - 1700001O22Rik protein_coding processed_transcript MGP_CASTEiJ_T0053735.1 MGP_CASTEiJ_G0024769.1 mouse_genomes_project 2 28691824 28699808 - 1700001O22Rik protein_coding processed_transcript MGP_CASTEiJ_T0053736.1 MGP_CASTEiJ_G0024769.1 mouse_genomes_project 2 28691841 28693045 - 1700001O22Rik protein_coding processed_transcript MGP_CASTEiJ_T0053737.1 MGP_CASTEiJ_G0024769.1 mouse_genomes_project 2 28692275 28699808 - 1700001O22Rik protein_coding processed_transcript MGP_CASTEiJ_T0053738.1 MGP_CASTEiJ_G0024769.1 mouse_genomes_project 2 28692349 28699808 - 1700001O22Rik protein_coding processed_transcript MGP_CASTEiJ_T0053739.1 MGP_CASTEiJ_G0024769.1 mouse_genomes_project 2 28693419 28699787 - 1700001O22Rik protein_coding processed_transcript MGP_CASTEiJ_T0013318.1 MGP_CASTEiJ_G0011481.1 mouse_genomes_project 2 121361884 121362559 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058459.1 MGP_CASTEiJ_G0025909.1 mouse_genomes_project 2 158807818 158823000 + Dynlrb1 protein_coding processed_transcript MGP_CASTEiJ_T0058460.1 MGP_CASTEiJ_G0025909.1 mouse_genomes_project 2 158807820 158823005 + MGP_CASTEiJ_P0058460 Dynlrb1 protein_coding protein_coding MGP_CASTEiJ_T0058461.1 MGP_CASTEiJ_G0025909.1 mouse_genomes_project 2 158807893 158822863 + MGP_CASTEiJ_P0058461 Dynlrb1 protein_coding protein_coding MGP_CASTEiJ_T0058462.1 MGP_CASTEiJ_G0025909.1 mouse_genomes_project 2 158808096 158822808 + Dynlrb1 protein_coding processed_transcript MGP_CASTEiJ_T0007098.1 MGP_CASTEiJ_G0005835.1 mouse_genomes_project 2 106982788 106985605 - Paupar lincRNA lincRNA MGP_CASTEiJ_T0057884.1 MGP_CASTEiJ_G0025749.1 mouse_genomes_project 2 143046196 143079897 + MGP_CASTEiJ_P0057884 Ndufaf5 protein_coding protein_coding MGP_CASTEiJ_T0057885.1 MGP_CASTEiJ_G0025749.1 mouse_genomes_project 2 143046219 143079899 + MGP_CASTEiJ_P0057885 Ndufaf5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057886.1 MGP_CASTEiJ_G0025749.1 mouse_genomes_project 2 143046260 143047861 + Ndufaf5 protein_coding retained_intron MGP_CASTEiJ_T0057887.1 MGP_CASTEiJ_G0025749.1 mouse_genomes_project 2 143046577 143079840 + Ndufaf5 protein_coding processed_transcript MGP_CASTEiJ_T0004005.1 MGP_CASTEiJ_G0003552.1 mouse_genomes_project 2 158162645 158165338 - Gm14198 antisense antisense MGP_CASTEiJ_T0013142.1 MGP_CASTEiJ_G0011305.1 mouse_genomes_project 2 54920163 54920396 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053100.1 MGP_CASTEiJ_G0024661.1 mouse_genomes_project 2 23232611 23237433 + MGP_CASTEiJ_P0053100 Lcn6 protein_coding protein_coding MGP_CASTEiJ_T0053101.1 MGP_CASTEiJ_G0024661.1 mouse_genomes_project 2 23235093 23237430 + MGP_CASTEiJ_P0053101 Lcn6 protein_coding protein_coding MGP_CASTEiJ_T0053102.1 MGP_CASTEiJ_G0024661.1 mouse_genomes_project 2 23235784 23237426 + MGP_CASTEiJ_P0053102 Lcn6 protein_coding protein_coding MGP_CASTEiJ_T0053103.1 MGP_CASTEiJ_G0024661.1 mouse_genomes_project 2 23235936 23237426 + Lcn6 protein_coding processed_transcript MGP_CASTEiJ_T0100868.1 MGP_CASTEiJ_G0037781.1 mouse_genomes_project 2 35593177 35593288 - Snord90 snoRNA snoRNA MGP_CASTEiJ_T0056887.1 MGP_CASTEiJ_G0025543.1 mouse_genomes_project 2 122060847 122086721 - Pla2g4e protein_coding retained_intron MGP_CASTEiJ_T0056888.1 MGP_CASTEiJ_G0025543.1 mouse_genomes_project 2 122060847 122140724 - MGP_CASTEiJ_P0056888 Pla2g4e protein_coding protein_coding MGP_CASTEiJ_T0056889.1 MGP_CASTEiJ_G0025543.1 mouse_genomes_project 2 122066626 122140464 - Pla2g4e protein_coding retained_intron MGP_CASTEiJ_T0056890.1 MGP_CASTEiJ_G0025543.1 mouse_genomes_project 2 122084921 122140490 - Pla2g4e protein_coding processed_transcript MGP_CASTEiJ_T0053862.1 MGP_CASTEiJ_G0024789.1 mouse_genomes_project 2 29877042 29941758 + MGP_CASTEiJ_P0053862 Lamc3 protein_coding protein_coding MGP_CASTEiJ_T0053863.1 MGP_CASTEiJ_G0024789.1 mouse_genomes_project 2 29877095 29943051 + MGP_CASTEiJ_P0053863 Lamc3 protein_coding protein_coding MGP_CASTEiJ_T0053864.1 MGP_CASTEiJ_G0024789.1 mouse_genomes_project 2 29919064 29919703 + Lamc3 protein_coding processed_transcript MGP_CASTEiJ_T0007027.1 MGP_CASTEiJ_G0005778.1 mouse_genomes_project 2 61537047 61540769 - Gm13564 lincRNA lincRNA MGP_CASTEiJ_T0013202.1 MGP_CASTEiJ_G0011365.1 mouse_genomes_project 2 79129128 79129330 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055680.1 MGP_CASTEiJ_G0025181.1 mouse_genomes_project 2 87547035 87547974 - MGP_CASTEiJ_P0055680 Olfr1106 protein_coding protein_coding MGP_CASTEiJ_T0059570.1 MGP_CASTEiJ_G0026149.1 mouse_genomes_project 2 179869782 179893266 + MGP_CASTEiJ_P0059570 Edn3 protein_coding protein_coding MGP_CASTEiJ_T0059571.1 MGP_CASTEiJ_G0026149.1 mouse_genomes_project 2 179869963 179891206 + MGP_CASTEiJ_P0059571 Edn3 protein_coding protein_coding MGP_CASTEiJ_T0059572.1 MGP_CASTEiJ_G0026149.1 mouse_genomes_project 2 179870216 179891811 + Edn3 protein_coding retained_intron MGP_CASTEiJ_T0059573.1 MGP_CASTEiJ_G0026149.1 mouse_genomes_project 2 179879078 179891766 + Edn3 protein_coding processed_transcript MGP_CASTEiJ_T0059322.1 MGP_CASTEiJ_G0026083.1 mouse_genomes_project 2 171396783 171424719 - MGP_CASTEiJ_P0059322 Znfx1 protein_coding protein_coding MGP_CASTEiJ_T0059323.1 MGP_CASTEiJ_G0026083.1 mouse_genomes_project 2 171396789 171404489 - MGP_CASTEiJ_P0059323 Znfx1 protein_coding protein_coding MGP_CASTEiJ_T0059324.1 MGP_CASTEiJ_G0026083.1 mouse_genomes_project 2 171405024 171422129 - MGP_CASTEiJ_P0059324 Znfx1 protein_coding protein_coding MGP_CASTEiJ_T0059325.1 MGP_CASTEiJ_G0026083.1 mouse_genomes_project 2 171405109 171424421 - MGP_CASTEiJ_P0059325 Znfx1 protein_coding protein_coding MGP_CASTEiJ_T0059326.1 MGP_CASTEiJ_G0026083.1 mouse_genomes_project 2 171410144 171424344 - Znfx1 protein_coding retained_intron MGP_CASTEiJ_T0054356.1 MGP_CASTEiJ_G0024868.1 mouse_genomes_project 2 34929311 34930250 + MGP_CASTEiJ_P0054356 Olfr347 protein_coding protein_coding MGP_CASTEiJ_T0102249.1 MGP_CASTEiJ_G0038974.1 mouse_genomes_project 2 124099701 124102056 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010189.1 MGP_CASTEiJ_G0008377.1 mouse_genomes_project 2 161333109 161333196 - Gm23134 miRNA miRNA MGP_CASTEiJ_T0003807.1 MGP_CASTEiJ_G0003409.1 mouse_genomes_project 2 24778602 24797852 - Dbhos antisense antisense MGP_CASTEiJ_T0055826.1 MGP_CASTEiJ_G0025301.1 mouse_genomes_project 2 90735558 90738986 + MGP_CASTEiJ_P0055826 Olfr1258 protein_coding protein_coding MGP_CASTEiJ_T0055827.1 MGP_CASTEiJ_G0025301.1 mouse_genomes_project 2 90738050 90738986 + MGP_CASTEiJ_P0055827 Olfr1258 protein_coding protein_coding MGP_CASTEiJ_T0100909.1 MGP_CASTEiJ_G0037822.1 mouse_genomes_project 2 132701477 132701547 + Gm23650 snoRNA snoRNA MGP_CASTEiJ_T0058600.1 MGP_CASTEiJ_G0025933.1 mouse_genomes_project 2 159712056 159716378 + Spag4 protein_coding retained_intron MGP_CASTEiJ_T0058601.1 MGP_CASTEiJ_G0025933.1 mouse_genomes_project 2 159712079 159717472 + Spag4 protein_coding retained_intron MGP_CASTEiJ_T0058602.1 MGP_CASTEiJ_G0025933.1 mouse_genomes_project 2 159712108 159716101 + Spag4 protein_coding retained_intron MGP_CASTEiJ_T0058603.1 MGP_CASTEiJ_G0025933.1 mouse_genomes_project 2 159712125 159716378 + MGP_CASTEiJ_P0058603 Spag4 protein_coding protein_coding MGP_CASTEiJ_T0058604.1 MGP_CASTEiJ_G0025933.1 mouse_genomes_project 2 159712318 159714202 + MGP_CASTEiJ_P0058604 Spag4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058605.1 MGP_CASTEiJ_G0025933.1 mouse_genomes_project 2 159712434 159714409 + MGP_CASTEiJ_P0058605 Spag4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058606.1 MGP_CASTEiJ_G0025933.1 mouse_genomes_project 2 159712623 159714917 + MGP_CASTEiJ_P0058606 Spag4 protein_coding protein_coding MGP_CASTEiJ_T0058607.1 MGP_CASTEiJ_G0025933.1 mouse_genomes_project 2 159713616 159716255 + Spag4 protein_coding processed_transcript MGP_CASTEiJ_T0058919.1 MGP_CASTEiJ_G0025987.1 mouse_genomes_project 2 164835166 164864260 + MGP_CASTEiJ_P0058919 Lpin3 protein_coding protein_coding MGP_CASTEiJ_T0058920.1 MGP_CASTEiJ_G0025987.1 mouse_genomes_project 2 164845195 164864265 + MGP_CASTEiJ_P0058920 Lpin3 protein_coding protein_coding MGP_CASTEiJ_T0058921.1 MGP_CASTEiJ_G0025987.1 mouse_genomes_project 2 164845195 164864265 + MGP_CASTEiJ_P0058921 Lpin3 protein_coding protein_coding MGP_CASTEiJ_T0058922.1 MGP_CASTEiJ_G0025987.1 mouse_genomes_project 2 164845258 164864055 + MGP_CASTEiJ_P0058922 Lpin3 protein_coding protein_coding MGP_CASTEiJ_T0058923.1 MGP_CASTEiJ_G0025987.1 mouse_genomes_project 2 164859803 164862008 + Lpin3 protein_coding processed_transcript MGP_CASTEiJ_T0053914.1 MGP_CASTEiJ_G0024796.1 mouse_genomes_project 2 30269118 30274210 - MGP_CASTEiJ_P0053914 Uck1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0053915.1 MGP_CASTEiJ_G0024796.1 mouse_genomes_project 2 30270464 30273838 - MGP_CASTEiJ_P0053915 Uck1 protein_coding protein_coding MGP_CASTEiJ_T0053916.1 MGP_CASTEiJ_G0024796.1 mouse_genomes_project 2 30272042 30273827 - Uck1 protein_coding retained_intron MGP_CASTEiJ_T0053917.1 MGP_CASTEiJ_G0024796.1 mouse_genomes_project 2 30272292 30274255 - Uck1 protein_coding retained_intron MGP_CASTEiJ_T0057701.1 MGP_CASTEiJ_G0025710.1 mouse_genomes_project 2 133797908 133856381 - MGP_CASTEiJ_P0057701 Rnf24 protein_coding protein_coding MGP_CASTEiJ_T0057702.1 MGP_CASTEiJ_G0025710.1 mouse_genomes_project 2 133797909 133813128 - MGP_CASTEiJ_P0057702 Rnf24 protein_coding protein_coding MGP_CASTEiJ_T0057703.1 MGP_CASTEiJ_G0025710.1 mouse_genomes_project 2 133797911 133832694 - MGP_CASTEiJ_P0057703 Rnf24 protein_coding protein_coding MGP_CASTEiJ_T0057704.1 MGP_CASTEiJ_G0025710.1 mouse_genomes_project 2 133802484 133856362 - MGP_CASTEiJ_P0057704 Rnf24 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057705.1 MGP_CASTEiJ_G0025710.1 mouse_genomes_project 2 133812375 133856392 - Rnf24 protein_coding retained_intron MGP_CASTEiJ_T0013346.1 MGP_CASTEiJ_G0011509.1 mouse_genomes_project 2 133964643 133965160 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013023.1 MGP_CASTEiJ_G0011186.1 mouse_genomes_project 2 8350840 8351774 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013288.1 MGP_CASTEiJ_G0011451.1 mouse_genomes_project 2 108299818 108300288 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056381.1 MGP_CASTEiJ_G0025401.1 mouse_genomes_project 2 105365579 105649900 - MGP_CASTEiJ_P0056381 D430041D05Rik protein_coding protein_coding MGP_CASTEiJ_T0056382.1 MGP_CASTEiJ_G0025401.1 mouse_genomes_project 2 105369543 105461412 - D430041D05Rik protein_coding retained_intron MGP_CASTEiJ_T0056383.1 MGP_CASTEiJ_G0025401.1 mouse_genomes_project 2 105371276 105490989 - MGP_CASTEiJ_P0056383 D430041D05Rik protein_coding protein_coding MGP_CASTEiJ_T0056384.1 MGP_CASTEiJ_G0025401.1 mouse_genomes_project 2 105374674 105382193 - D430041D05Rik protein_coding retained_intron MGP_CASTEiJ_T0056385.1 MGP_CASTEiJ_G0025401.1 mouse_genomes_project 2 105411060 105471943 - D430041D05Rik protein_coding retained_intron MGP_CASTEiJ_T0056386.1 MGP_CASTEiJ_G0025401.1 mouse_genomes_project 2 105436304 105490155 - D430041D05Rik protein_coding retained_intron MGP_CASTEiJ_T0056387.1 MGP_CASTEiJ_G0025401.1 mouse_genomes_project 2 105487297 105649558 - MGP_CASTEiJ_P0056387 D430041D05Rik protein_coding protein_coding MGP_CASTEiJ_T0056388.1 MGP_CASTEiJ_G0025401.1 mouse_genomes_project 2 105487590 105649559 - MGP_CASTEiJ_P0056388 D430041D05Rik protein_coding protein_coding MGP_CASTEiJ_T0058463.1 MGP_CASTEiJ_G0025910.1 mouse_genomes_project 2 158845336 158847110 + MGP_CASTEiJ_P0058463 Map1lc3a protein_coding protein_coding MGP_CASTEiJ_T0058464.1 MGP_CASTEiJ_G0025910.1 mouse_genomes_project 2 158845582 158847107 + Map1lc3a protein_coding processed_transcript MGP_CASTEiJ_T0058465.1 MGP_CASTEiJ_G0025910.1 mouse_genomes_project 2 158845928 158847105 + Map1lc3a protein_coding processed_transcript MGP_CASTEiJ_T0006955.1 MGP_CASTEiJ_G0005722.1 mouse_genomes_project 2 8614002 8672109 - 8030442B05Rik lincRNA lincRNA MGP_CASTEiJ_T0055758.1 MGP_CASTEiJ_G0025247.1 mouse_genomes_project 2 89421218 89422145 - MGP_CASTEiJ_P0055758 Olfr1195 protein_coding protein_coding MGP_CASTEiJ_T0054515.1 MGP_CASTEiJ_G0024913.1 mouse_genomes_project 2 42246198 42910891 + MGP_CASTEiJ_P0054515 Arhgap15 protein_coding protein_coding MGP_CASTEiJ_T0054516.1 MGP_CASTEiJ_G0024913.1 mouse_genomes_project 2 42246208 42902554 + MGP_CASTEiJ_P0054516 Arhgap15 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054517.1 MGP_CASTEiJ_G0024913.1 mouse_genomes_project 2 42246243 42401251 + Arhgap15 protein_coding processed_transcript MGP_CASTEiJ_T0054518.1 MGP_CASTEiJ_G0024913.1 mouse_genomes_project 2 42246244 42902558 + MGP_CASTEiJ_P0054518 Arhgap15 protein_coding protein_coding MGP_CASTEiJ_T0054519.1 MGP_CASTEiJ_G0024913.1 mouse_genomes_project 2 42587131 42668202 + Arhgap15 protein_coding processed_transcript MGP_CASTEiJ_T0017125.1 MGP_CASTEiJ_G0014784.1 mouse_genomes_project 2 131684143 131697491 + Gm14023 processed_transcript processed_transcript MGP_CASTEiJ_T0056508.1 MGP_CASTEiJ_G0025427.1 mouse_genomes_project 2 111391449 111492002 + MGP_CASTEiJ_P0056508 Lgr4 protein_coding protein_coding MGP_CASTEiJ_T0056509.1 MGP_CASTEiJ_G0025427.1 mouse_genomes_project 2 111391449 111492002 + MGP_CASTEiJ_P0056509 Lgr4 protein_coding protein_coding MGP_CASTEiJ_T0056510.1 MGP_CASTEiJ_G0025427.1 mouse_genomes_project 2 111451594 111473753 + Lgr4 protein_coding processed_transcript MGP_CASTEiJ_T0056511.1 MGP_CASTEiJ_G0025427.1 mouse_genomes_project 2 111477647 111478580 + Lgr4 protein_coding retained_intron MGP_CASTEiJ_T0057274.1 MGP_CASTEiJ_G0025613.1 mouse_genomes_project 2 127959066 128008400 - MGP_CASTEiJ_P0057274 Secisbp2l protein_coding protein_coding MGP_CASTEiJ_T0057275.1 MGP_CASTEiJ_G0025613.1 mouse_genomes_project 2 127962194 128008231 - MGP_CASTEiJ_P0057275 Secisbp2l protein_coding unknown_likely_coding MGP_CASTEiJ_T0057276.1 MGP_CASTEiJ_G0025613.1 mouse_genomes_project 2 127968079 127983933 - MGP_CASTEiJ_P0057276 Secisbp2l protein_coding protein_coding MGP_CASTEiJ_T0057277.1 MGP_CASTEiJ_G0025613.1 mouse_genomes_project 2 127974068 127975953 - Secisbp2l protein_coding retained_intron MGP_CASTEiJ_T0098578.1 MGP_CASTEiJ_G0035509.1 mouse_genomes_project 2 121494167 121494286 + n-R5s204 rRNA rRNA MGP_CASTEiJ_T0010173.1 MGP_CASTEiJ_G0008361.1 mouse_genomes_project 2 130188945 130189071 + Gm22411 miRNA miRNA MGP_CASTEiJ_T0007100.1 MGP_CASTEiJ_G0005837.1 mouse_genomes_project 2 107818391 107878442 - Gm14015 lincRNA lincRNA MGP_CASTEiJ_T0055727.1 MGP_CASTEiJ_G0025218.1 mouse_genomes_project 2 88415364 88416297 + MGP_CASTEiJ_P0055727 Olfr1152 protein_coding protein_coding MGP_CASTEiJ_T0059521.1 MGP_CASTEiJ_G0026138.1 mouse_genomes_project 2 178770325 178815842 + MGP_CASTEiJ_P0059521 Vapb protein_coding protein_coding MGP_CASTEiJ_T0059522.1 MGP_CASTEiJ_G0026138.1 mouse_genomes_project 2 178800232 178809669 + Vapb protein_coding processed_transcript MGP_CASTEiJ_T0102250.1 MGP_CASTEiJ_G0038975.1 mouse_genomes_project 2 124506269 124506545 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0056140.1 MGP_CASTEiJ_G0025355.1 mouse_genomes_project 2 93413298 93439756 - MGP_CASTEiJ_P0056140 Slc35c1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056141.1 MGP_CASTEiJ_G0025355.1 mouse_genomes_project 2 93432698 93439745 - MGP_CASTEiJ_P0056141 Slc35c1 protein_coding protein_coding MGP_CASTEiJ_T0056142.1 MGP_CASTEiJ_G0025355.1 mouse_genomes_project 2 93432701 93440486 - MGP_CASTEiJ_P0056142 Slc35c1 protein_coding protein_coding MGP_CASTEiJ_T0056143.1 MGP_CASTEiJ_G0025355.1 mouse_genomes_project 2 93438636 93439660 - MGP_CASTEiJ_P0056143 Slc35c1 protein_coding protein_coding MGP_CASTEiJ_T0017041.1 MGP_CASTEiJ_G0014742.1 mouse_genomes_project 2 73163404 73199896 + D230022J07Rik processed_transcript processed_transcript MGP_CASTEiJ_T0055124.1 MGP_CASTEiJ_G0025015.1 mouse_genomes_project 2 70680121 70708506 + MGP_CASTEiJ_P0055124 Cybrd1 protein_coding protein_coding MGP_CASTEiJ_T0054652.1 MGP_CASTEiJ_G0024932.1 mouse_genomes_project 2 51303098 51575006 - MGP_CASTEiJ_P0054652 Cacnb4 protein_coding protein_coding MGP_CASTEiJ_T0054653.1 MGP_CASTEiJ_G0024932.1 mouse_genomes_project 2 51303103 51448334 - MGP_CASTEiJ_P0054653 Cacnb4 protein_coding protein_coding MGP_CASTEiJ_T0054654.1 MGP_CASTEiJ_G0024932.1 mouse_genomes_project 2 51303103 51575233 - MGP_CASTEiJ_P0054654 Cacnb4 protein_coding protein_coding MGP_CASTEiJ_T0054655.1 MGP_CASTEiJ_G0024932.1 mouse_genomes_project 2 51303103 51448341 - MGP_CASTEiJ_P0054655 Cacnb4 protein_coding protein_coding MGP_CASTEiJ_T0054656.1 MGP_CASTEiJ_G0024932.1 mouse_genomes_project 2 51445969 51446490 - Cacnb4 protein_coding processed_transcript MGP_CASTEiJ_T0054657.1 MGP_CASTEiJ_G0024932.1 mouse_genomes_project 2 51574153 51574569 - Cacnb4 protein_coding processed_transcript MGP_CASTEiJ_T0007223.1 MGP_CASTEiJ_G0005938.1 mouse_genomes_project 2 173539727 173540367 + 1700017J07Rik lincRNA lincRNA MGP_CASTEiJ_T0003955.1 MGP_CASTEiJ_G0003515.1 mouse_genomes_project 2 131568476 131569941 - Gm14029 antisense antisense MGP_CASTEiJ_T0003806.1 MGP_CASTEiJ_G0003408.1 mouse_genomes_project 2 24668327 24671886 + Gm13398 antisense antisense MGP_CASTEiJ_T0056072.1 MGP_CASTEiJ_G0025346.1 mouse_genomes_project 2 92871910 92917223 - MGP_CASTEiJ_P0056072 Dgkz protein_coding protein_coding MGP_CASTEiJ_T0056073.1 MGP_CASTEiJ_G0025346.1 mouse_genomes_project 2 92871910 92906977 - MGP_CASTEiJ_P0056073 Dgkz protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056074.1 MGP_CASTEiJ_G0025346.1 mouse_genomes_project 2 92871912 92905054 - MGP_CASTEiJ_P0056074 Dgkz protein_coding protein_coding MGP_CASTEiJ_T0056075.1 MGP_CASTEiJ_G0025346.1 mouse_genomes_project 2 92871913 92889605 - MGP_CASTEiJ_P0056075 Dgkz protein_coding protein_coding MGP_CASTEiJ_T0056076.1 MGP_CASTEiJ_G0025346.1 mouse_genomes_project 2 92871913 92906990 - MGP_CASTEiJ_P0056076 Dgkz protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056077.1 MGP_CASTEiJ_G0025346.1 mouse_genomes_project 2 92872321 92873018 - Dgkz protein_coding retained_intron MGP_CASTEiJ_T0056078.1 MGP_CASTEiJ_G0025346.1 mouse_genomes_project 2 92872469 92873667 - Dgkz protein_coding retained_intron MGP_CASTEiJ_T0056079.1 MGP_CASTEiJ_G0025346.1 mouse_genomes_project 2 92872527 92874586 - Dgkz protein_coding retained_intron MGP_CASTEiJ_T0056080.1 MGP_CASTEiJ_G0025346.1 mouse_genomes_project 2 92872540 92873597 - Dgkz protein_coding retained_intron MGP_CASTEiJ_T0056081.1 MGP_CASTEiJ_G0025346.1 mouse_genomes_project 2 92872866 92874687 - Dgkz protein_coding retained_intron MGP_CASTEiJ_T0056082.1 MGP_CASTEiJ_G0025346.1 mouse_genomes_project 2 92874995 92877109 - Dgkz protein_coding processed_transcript MGP_CASTEiJ_T0056083.1 MGP_CASTEiJ_G0025346.1 mouse_genomes_project 2 92879850 92889489 - MGP_CASTEiJ_P0056083 Dgkz protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056084.1 MGP_CASTEiJ_G0025346.1 mouse_genomes_project 2 92880101 92884373 - Dgkz protein_coding processed_transcript MGP_CASTEiJ_T0013114.1 MGP_CASTEiJ_G0011277.1 mouse_genomes_project 2 44241587 44242000 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102207.1 MGP_CASTEiJ_G0038932.1 mouse_genomes_project 2 35035976 35036558 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0057754.1 MGP_CASTEiJ_G0025721.1 mouse_genomes_project 2 134830432 134886446 + MGP_CASTEiJ_P0057754 Cds2 protein_coding protein_coding MGP_CASTEiJ_T0057755.1 MGP_CASTEiJ_G0025721.1 mouse_genomes_project 2 134830432 134870720 + MGP_CASTEiJ_P0057755 Cds2 protein_coding protein_coding MGP_CASTEiJ_T0057756.1 MGP_CASTEiJ_G0025721.1 mouse_genomes_project 2 134830525 134871823 + MGP_CASTEiJ_P0057756 Cds2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057757.1 MGP_CASTEiJ_G0025721.1 mouse_genomes_project 2 134855866 134870113 + MGP_CASTEiJ_P0057757 Cds2 protein_coding protein_coding MGP_CASTEiJ_T0057758.1 MGP_CASTEiJ_G0025721.1 mouse_genomes_project 2 134856629 134886446 + MGP_CASTEiJ_P0057758 Cds2 protein_coding protein_coding MGP_CASTEiJ_T0057759.1 MGP_CASTEiJ_G0025721.1 mouse_genomes_project 2 134875838 134879842 + MGP_CASTEiJ_P0057759 Cds2 protein_coding protein_coding MGP_CASTEiJ_T0013377.1 MGP_CASTEiJ_G0011540.1 mouse_genomes_project 2 148007176 148007997 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013419.1 MGP_CASTEiJ_G0011582.1 mouse_genomes_project 2 160530044 160539471 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100900.1 MGP_CASTEiJ_G0037813.1 mouse_genomes_project 2 121614352 121614481 - Gm25857 snoRNA snoRNA MGP_CASTEiJ_T0013083.1 MGP_CASTEiJ_G0011246.1 mouse_genomes_project 2 32611796 32612052 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056413.1 MGP_CASTEiJ_G0025409.1 mouse_genomes_project 2 106160933 106246401 + MGP_CASTEiJ_P0056413 Ccdc73 protein_coding protein_coding MGP_CASTEiJ_T0056414.1 MGP_CASTEiJ_G0025409.1 mouse_genomes_project 2 106182522 106298873 + MGP_CASTEiJ_P0056414 Ccdc73 protein_coding protein_coding MGP_CASTEiJ_T0056415.1 MGP_CASTEiJ_G0025409.1 mouse_genomes_project 2 106204164 106287779 + MGP_CASTEiJ_P0056415 Ccdc73 protein_coding protein_coding MGP_CASTEiJ_T0056416.1 MGP_CASTEiJ_G0025409.1 mouse_genomes_project 2 106289941 106317028 + MGP_CASTEiJ_P0056416 Ccdc73 protein_coding protein_coding MGP_CASTEiJ_T0056421.1 MGP_CASTEiJ_G0025409.1 mouse_genomes_project 2 106316290 106317081 + Ccdc73 protein_coding processed_transcript MGP_CASTEiJ_T0054395.1 MGP_CASTEiJ_G0024892.1 mouse_genomes_project 2 35637942 35695823 + MGP_CASTEiJ_P0054395 Rabgap1 protein_coding protein_coding MGP_CASTEiJ_T0054396.1 MGP_CASTEiJ_G0024892.1 mouse_genomes_project 2 35637948 35770187 + MGP_CASTEiJ_P0054396 Rabgap1 protein_coding protein_coding MGP_CASTEiJ_T0054397.1 MGP_CASTEiJ_G0024892.1 mouse_genomes_project 2 35637959 35686763 + Rabgap1 protein_coding retained_intron MGP_CASTEiJ_T0054398.1 MGP_CASTEiJ_G0024892.1 mouse_genomes_project 2 35646382 35648535 + Rabgap1 protein_coding processed_transcript MGP_CASTEiJ_T0054399.1 MGP_CASTEiJ_G0024892.1 mouse_genomes_project 2 35646991 35748931 + MGP_CASTEiJ_P0054399 Rabgap1 protein_coding protein_coding MGP_CASTEiJ_T0054400.1 MGP_CASTEiJ_G0024892.1 mouse_genomes_project 2 35646991 35673940 + MGP_CASTEiJ_P0054400 Rabgap1 protein_coding protein_coding MGP_CASTEiJ_T0054401.1 MGP_CASTEiJ_G0024892.1 mouse_genomes_project 2 35647013 35770204 + MGP_CASTEiJ_P0054401 Rabgap1 protein_coding protein_coding MGP_CASTEiJ_T0054403.1 MGP_CASTEiJ_G0024892.1 mouse_genomes_project 2 35691124 35694181 + Rabgap1 protein_coding retained_intron MGP_CASTEiJ_T0054404.1 MGP_CASTEiJ_G0024892.1 mouse_genomes_project 2 35692168 35710557 + Rabgap1 protein_coding processed_transcript MGP_CASTEiJ_T0054406.1 MGP_CASTEiJ_G0024892.1 mouse_genomes_project 2 35718652 35768807 + Rabgap1 protein_coding processed_transcript MGP_CASTEiJ_T0007058.1 MGP_CASTEiJ_G0005804.1 mouse_genomes_project 2 75617986 75618572 - Gm13656 lincRNA lincRNA MGP_CASTEiJ_T0013404.1 MGP_CASTEiJ_G0011567.1 mouse_genomes_project 2 157801384 157802433 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059049.1 MGP_CASTEiJ_G0026025.1 mouse_genomes_project 2 168492231 168494669 - MGP_CASTEiJ_P0059049 Slpi protein_coding protein_coding MGP_CASTEiJ_T0059050.1 MGP_CASTEiJ_G0026025.1 mouse_genomes_project 2 168492323 168494229 - MGP_CASTEiJ_P0059050 Slpi protein_coding protein_coding MGP_CASTEiJ_T0059051.1 MGP_CASTEiJ_G0026025.1 mouse_genomes_project 2 168493756 168531553 - MGP_CASTEiJ_P0059051 Slpi protein_coding protein_coding MGP_CASTEiJ_T0001029.1 MGP_CASTEiJ_G0000965.1 mouse_genomes_project 2 36803781 36806369 - TEC TEC MGP_CASTEiJ_T0007089.1 MGP_CASTEiJ_G0005829.1 mouse_genomes_project 2 104353485 104358627 + Gm13874 lincRNA lincRNA MGP_CASTEiJ_T0007090.1 MGP_CASTEiJ_G0005829.1 mouse_genomes_project 2 104353869 104358627 + Gm13874 lincRNA lincRNA MGP_CASTEiJ_T0007091.1 MGP_CASTEiJ_G0005829.1 mouse_genomes_project 2 104357959 104363571 + Gm13874 lincRNA lincRNA MGP_CASTEiJ_T0007209.1 MGP_CASTEiJ_G0005927.1 mouse_genomes_project 2 170747885 170762793 + 5031425F14Rik lincRNA lincRNA MGP_CASTEiJ_T0059455.1 MGP_CASTEiJ_G0026112.1 mouse_genomes_project 2 175236521 175244799 + MGP_CASTEiJ_P0059455 Pfdn4 protein_coding protein_coding MGP_CASTEiJ_T0059456.1 MGP_CASTEiJ_G0026112.1 mouse_genomes_project 2 175236522 175245012 + MGP_CASTEiJ_P0059456 Pfdn4 protein_coding protein_coding MGP_CASTEiJ_T0102255.1 MGP_CASTEiJ_G0038980.1 mouse_genomes_project 2 157495483 157499837 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013277.1 MGP_CASTEiJ_G0011440.1 mouse_genomes_project 2 105043332 105043614 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013305.1 MGP_CASTEiJ_G0011468.1 mouse_genomes_project 2 113409905 113411656 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058266.1 MGP_CASTEiJ_G0025858.1 mouse_genomes_project 2 156190754 156241435 + MGP_CASTEiJ_P0058266 Tpx2 protein_coding protein_coding MGP_CASTEiJ_T0058267.1 MGP_CASTEiJ_G0025858.1 mouse_genomes_project 2 156190754 156241435 + MGP_CASTEiJ_P0058267 Tpx2 protein_coding protein_coding MGP_CASTEiJ_T0058268.1 MGP_CASTEiJ_G0025858.1 mouse_genomes_project 2 156190768 156240716 + MGP_CASTEiJ_P0058268 Tpx2 protein_coding protein_coding MGP_CASTEiJ_T0058269.1 MGP_CASTEiJ_G0025858.1 mouse_genomes_project 2 156190785 156240716 + MGP_CASTEiJ_P0058269 Tpx2 protein_coding protein_coding MGP_CASTEiJ_T0058270.1 MGP_CASTEiJ_G0025858.1 mouse_genomes_project 2 156190872 156199033 + Tpx2 protein_coding processed_transcript MGP_CASTEiJ_T0058271.1 MGP_CASTEiJ_G0025858.1 mouse_genomes_project 2 156215315 156226620 + Tpx2 protein_coding retained_intron MGP_CASTEiJ_T0058272.1 MGP_CASTEiJ_G0025858.1 mouse_genomes_project 2 156228102 156230266 + Tpx2 protein_coding retained_intron MGP_CASTEiJ_T0055898.1 MGP_CASTEiJ_G0025323.1 mouse_genomes_project 2 91797079 91844547 + Celf1 protein_coding processed_transcript MGP_CASTEiJ_T0055899.1 MGP_CASTEiJ_G0025323.1 mouse_genomes_project 2 91797094 91877550 + MGP_CASTEiJ_P0055899 Celf1 protein_coding protein_coding MGP_CASTEiJ_T0055900.1 MGP_CASTEiJ_G0025323.1 mouse_genomes_project 2 91797155 91855981 + Celf1 protein_coding processed_transcript MGP_CASTEiJ_T0055901.1 MGP_CASTEiJ_G0025323.1 mouse_genomes_project 2 91797234 91859799 + Celf1 protein_coding processed_transcript MGP_CASTEiJ_T0055902.1 MGP_CASTEiJ_G0025323.1 mouse_genomes_project 2 91798573 91876794 + MGP_CASTEiJ_P0055902 Celf1 protein_coding protein_coding MGP_CASTEiJ_T0055903.1 MGP_CASTEiJ_G0025323.1 mouse_genomes_project 2 91822309 91844609 + Celf1 protein_coding processed_transcript MGP_CASTEiJ_T0055904.1 MGP_CASTEiJ_G0025323.1 mouse_genomes_project 2 91844538 91877543 + MGP_CASTEiJ_P0055904 Celf1 protein_coding protein_coding MGP_CASTEiJ_T0055905.1 MGP_CASTEiJ_G0025323.1 mouse_genomes_project 2 91855943 91877550 + MGP_CASTEiJ_P0055905 Celf1 protein_coding protein_coding MGP_CASTEiJ_T0055906.1 MGP_CASTEiJ_G0025323.1 mouse_genomes_project 2 91870542 91871424 + Celf1 protein_coding processed_transcript MGP_CASTEiJ_T0017121.1 MGP_CASTEiJ_G0014781.1 mouse_genomes_project 2 131399312 131404074 + Gm14027 processed_transcript processed_transcript MGP_CASTEiJ_T0056228.1 MGP_CASTEiJ_G0025371.1 mouse_genomes_project 2 95409175 95520687 - MGP_CASTEiJ_P0056228 Ttc17 protein_coding protein_coding MGP_CASTEiJ_T0056229.1 MGP_CASTEiJ_G0025371.1 mouse_genomes_project 2 95409177 95520670 - MGP_CASTEiJ_P0056229 Ttc17 protein_coding protein_coding MGP_CASTEiJ_T0056230.1 MGP_CASTEiJ_G0025371.1 mouse_genomes_project 2 95436147 95520679 - MGP_CASTEiJ_P0056230 Ttc17 protein_coding protein_coding MGP_CASTEiJ_T0056231.1 MGP_CASTEiJ_G0025371.1 mouse_genomes_project 2 95462757 95473241 - Ttc17 protein_coding processed_transcript MGP_CASTEiJ_T0056232.1 MGP_CASTEiJ_G0025371.1 mouse_genomes_project 2 95494745 95519006 - Ttc17 protein_coding processed_transcript MGP_CASTEiJ_T0055319.1 MGP_CASTEiJ_G0025059.1 mouse_genomes_project 2 76345708 76347138 + Osbpl6 protein_coding processed_transcript MGP_CASTEiJ_T0055320.1 MGP_CASTEiJ_G0025059.1 mouse_genomes_project 2 76345738 76536847 + MGP_CASTEiJ_P0055320 Osbpl6 protein_coding protein_coding MGP_CASTEiJ_T0055321.1 MGP_CASTEiJ_G0025059.1 mouse_genomes_project 2 76345738 76536851 + MGP_CASTEiJ_P0055321 Osbpl6 protein_coding protein_coding MGP_CASTEiJ_T0055322.1 MGP_CASTEiJ_G0025059.1 mouse_genomes_project 2 76345758 76532797 + MGP_CASTEiJ_P0055322 Osbpl6 protein_coding protein_coding MGP_CASTEiJ_T0055323.1 MGP_CASTEiJ_G0025059.1 mouse_genomes_project 2 76345761 76346667 + Osbpl6 protein_coding processed_transcript MGP_CASTEiJ_T0055324.1 MGP_CASTEiJ_G0025059.1 mouse_genomes_project 2 76431770 76474376 + Osbpl6 protein_coding processed_transcript MGP_CASTEiJ_T0055325.1 MGP_CASTEiJ_G0025059.1 mouse_genomes_project 2 76481189 76532246 + MGP_CASTEiJ_P0055325 Osbpl6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055326.1 MGP_CASTEiJ_G0025059.1 mouse_genomes_project 2 76497204 76532252 + MGP_CASTEiJ_P0055326 Osbpl6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055327.1 MGP_CASTEiJ_G0025059.1 mouse_genomes_project 2 76500819 76515549 + Osbpl6 protein_coding processed_transcript MGP_CASTEiJ_T0059077.1 MGP_CASTEiJ_G0026033.1 mouse_genomes_project 2 168645114 168656926 + MGP_CASTEiJ_P0059077 Pigt protein_coding protein_coding MGP_CASTEiJ_T0059078.1 MGP_CASTEiJ_G0026033.1 mouse_genomes_project 2 168645129 168651793 + MGP_CASTEiJ_P0059078 Pigt protein_coding protein_coding MGP_CASTEiJ_T0059079.1 MGP_CASTEiJ_G0026033.1 mouse_genomes_project 2 168645140 168652069 + Pigt protein_coding retained_intron MGP_CASTEiJ_T0059080.1 MGP_CASTEiJ_G0026033.1 mouse_genomes_project 2 168645155 168656926 + MGP_CASTEiJ_P0059080 Pigt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059081.1 MGP_CASTEiJ_G0026033.1 mouse_genomes_project 2 168647509 168649228 + Pigt protein_coding retained_intron MGP_CASTEiJ_T0001019.1 MGP_CASTEiJ_G0000955.1 mouse_genomes_project 2 31745828 31746107 + TEC TEC MGP_CASTEiJ_T0058093.1 MGP_CASTEiJ_G0025804.1 mouse_genomes_project 2 153053878 153054568 - MGP_CASTEiJ_P0058093 C530025M09Rik protein_coding protein_coding MGP_CASTEiJ_T0055624.1 MGP_CASTEiJ_G0025127.1 mouse_genomes_project 2 86133424 86134360 - MGP_CASTEiJ_P0055624 Olfr1012 protein_coding protein_coding MGP_CASTEiJ_T0017130.1 MGP_CASTEiJ_G0014788.1 mouse_genomes_project 2 134377575 134408574 - 5330413P13Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017131.1 MGP_CASTEiJ_G0014788.1 mouse_genomes_project 2 134404453 134408579 - 5330413P13Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017132.1 MGP_CASTEiJ_G0014788.1 mouse_genomes_project 2 134404670 134408544 - 5330413P13Rik processed_transcript processed_transcript MGP_CASTEiJ_T0057346.1 MGP_CASTEiJ_G0025627.1 mouse_genomes_project 2 129272476 129302964 + Ap4e1 protein_coding retained_intron MGP_CASTEiJ_T0057347.1 MGP_CASTEiJ_G0025627.1 mouse_genomes_project 2 129272480 129277261 + Ap4e1 protein_coding retained_intron MGP_CASTEiJ_T0057348.1 MGP_CASTEiJ_G0025627.1 mouse_genomes_project 2 129272483 129312073 + MGP_CASTEiJ_P0057348 Ap4e1 protein_coding protein_coding MGP_CASTEiJ_T0057349.1 MGP_CASTEiJ_G0025627.1 mouse_genomes_project 2 129272489 129335097 + MGP_CASTEiJ_P0057349 Ap4e1 protein_coding protein_coding MGP_CASTEiJ_T0057350.1 MGP_CASTEiJ_G0025627.1 mouse_genomes_project 2 129272511 129293465 + MGP_CASTEiJ_P0057350 Ap4e1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057351.1 MGP_CASTEiJ_G0025627.1 mouse_genomes_project 2 129272513 129327710 + MGP_CASTEiJ_P0057351 Ap4e1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057352.1 MGP_CASTEiJ_G0025627.1 mouse_genomes_project 2 129272513 129314417 + MGP_CASTEiJ_P0057352 Ap4e1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057353.1 MGP_CASTEiJ_G0025627.1 mouse_genomes_project 2 129316597 129327539 + MGP_CASTEiJ_P0057353 Ap4e1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053386.1 MGP_CASTEiJ_G0024716.1 mouse_genomes_project 2 25894390 25915876 + Olfm1 protein_coding processed_transcript MGP_CASTEiJ_T0053387.1 MGP_CASTEiJ_G0024716.1 mouse_genomes_project 2 25894390 25933154 + MGP_CASTEiJ_P0053387 Olfm1 protein_coding protein_coding MGP_CASTEiJ_T0053388.1 MGP_CASTEiJ_G0024716.1 mouse_genomes_project 2 25894491 25933429 + MGP_CASTEiJ_P0053388 Olfm1 protein_coding protein_coding MGP_CASTEiJ_T0053389.1 MGP_CASTEiJ_G0024716.1 mouse_genomes_project 2 25907091 25915876 + MGP_CASTEiJ_P0053389 Olfm1 protein_coding protein_coding MGP_CASTEiJ_T0053390.1 MGP_CASTEiJ_G0024716.1 mouse_genomes_project 2 25907091 25933429 + MGP_CASTEiJ_P0053390 Olfm1 protein_coding protein_coding MGP_CASTEiJ_T0053391.1 MGP_CASTEiJ_G0024716.1 mouse_genomes_project 2 25907351 25932544 + MGP_CASTEiJ_P0053391 Olfm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056549.1 MGP_CASTEiJ_G0025451.1 mouse_genomes_project 2 113084577 113085516 - MGP_CASTEiJ_P0056549 protein_coding protein_coding MGP_CASTEiJ_T0004059.1 MGP_CASTEiJ_G0003593.1 mouse_genomes_project 2 179336279 179350803 - Nespas antisense antisense MGP_CASTEiJ_T0004060.1 MGP_CASTEiJ_G0003593.1 mouse_genomes_project 2 179337236 179350756 - Nespas antisense antisense MGP_CASTEiJ_T0004061.1 MGP_CASTEiJ_G0003593.1 mouse_genomes_project 2 179339390 179340470 - Nespas antisense antisense MGP_CASTEiJ_T0058195.1 MGP_CASTEiJ_G0025828.1 mouse_genomes_project 2 155276220 155287917 + MGP_CASTEiJ_P0058195 Slc52a3 protein_coding protein_coding MGP_CASTEiJ_T0052177.1 MGP_CASTEiJ_G0024506.1 mouse_genomes_project 2 471221 491127 - MGP_CASTEiJ_P0052177 protein_coding protein_coding MGP_CASTEiJ_T0052178.1 MGP_CASTEiJ_G0024506.1 mouse_genomes_project 2 471347 472534 - protein_coding retained_intron MGP_CASTEiJ_T0052179.1 MGP_CASTEiJ_G0024506.1 mouse_genomes_project 2 473350 474433 - protein_coding retained_intron MGP_CASTEiJ_T0052180.1 MGP_CASTEiJ_G0024506.1 mouse_genomes_project 2 478297 480288 - protein_coding retained_intron MGP_CASTEiJ_T0052181.1 MGP_CASTEiJ_G0024506.1 mouse_genomes_project 2 482686 484931 - protein_coding retained_intron MGP_CASTEiJ_T0052182.1 MGP_CASTEiJ_G0024506.1 mouse_genomes_project 2 489204 491056 - protein_coding retained_intron MGP_CASTEiJ_T0056873.1 MGP_CASTEiJ_G0025540.1 mouse_genomes_project 2 121923449 121931984 + protein_coding retained_intron MGP_CASTEiJ_T0056874.1 MGP_CASTEiJ_G0025540.1 mouse_genomes_project 2 121923465 121933045 + protein_coding retained_intron MGP_CASTEiJ_T0056875.1 MGP_CASTEiJ_G0025540.1 mouse_genomes_project 2 121923465 121931983 + MGP_CASTEiJ_P0056875 protein_coding protein_coding MGP_CASTEiJ_T0056876.1 MGP_CASTEiJ_G0025540.1 mouse_genomes_project 2 121924575 121926150 + protein_coding retained_intron MGP_CASTEiJ_T0056877.1 MGP_CASTEiJ_G0025540.1 mouse_genomes_project 2 121928887 121930467 + protein_coding retained_intron MGP_CASTEiJ_T0056878.1 MGP_CASTEiJ_G0025540.1 mouse_genomes_project 2 121930988 121931709 + protein_coding retained_intron MGP_CASTEiJ_T0098569.1 MGP_CASTEiJ_G0035500.1 mouse_genomes_project 2 60888961 60889078 + Gm25966 rRNA rRNA MGP_CASTEiJ_T0057797.1 MGP_CASTEiJ_G0025729.1 mouse_genomes_project 2 135491754 135505412 - MGP_CASTEiJ_P0057797 Lrrn4 protein_coding protein_coding MGP_CASTEiJ_T0057100.1 MGP_CASTEiJ_G0025571.1 mouse_genomes_project 2 123326798 123344058 - MGP_CASTEiJ_P0057100 Strc protein_coding protein_coding MGP_CASTEiJ_T0057101.1 MGP_CASTEiJ_G0025571.1 mouse_genomes_project 2 123331513 123338155 - MGP_CASTEiJ_P0057101 Strc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057102.1 MGP_CASTEiJ_G0025571.1 mouse_genomes_project 2 123336014 123338139 - Strc protein_coding processed_transcript MGP_CASTEiJ_T0057103.1 MGP_CASTEiJ_G0025571.1 mouse_genomes_project 2 123336093 123337918 - Strc protein_coding retained_intron MGP_CASTEiJ_T0057104.1 MGP_CASTEiJ_G0025571.1 mouse_genomes_project 2 123339471 123350854 - Strc protein_coding retained_intron MGP_CASTEiJ_T0057115.1 MGP_CASTEiJ_G0025574.1 mouse_genomes_project 2 123409119 123415729 - MGP_CASTEiJ_P0057115 Ell3 protein_coding protein_coding MGP_CASTEiJ_T0057116.1 MGP_CASTEiJ_G0025574.1 mouse_genomes_project 2 123409136 123412712 - MGP_CASTEiJ_P0057116 Ell3 protein_coding protein_coding MGP_CASTEiJ_T0057118.1 MGP_CASTEiJ_G0025574.1 mouse_genomes_project 2 123410089 123411262 - Ell3 protein_coding retained_intron MGP_CASTEiJ_T0059708.1 MGP_CASTEiJ_G0026182.1 mouse_genomes_project 2 183818105 183833325 + MGP_CASTEiJ_P0059708 Arfgap1 protein_coding protein_coding MGP_CASTEiJ_T0059709.1 MGP_CASTEiJ_G0026182.1 mouse_genomes_project 2 183818114 183833393 + MGP_CASTEiJ_P0059709 Arfgap1 protein_coding protein_coding MGP_CASTEiJ_T0059710.1 MGP_CASTEiJ_G0026182.1 mouse_genomes_project 2 183818125 183832567 + MGP_CASTEiJ_P0059710 Arfgap1 protein_coding protein_coding MGP_CASTEiJ_T0059711.1 MGP_CASTEiJ_G0026182.1 mouse_genomes_project 2 183818145 183833327 + Arfgap1 protein_coding retained_intron MGP_CASTEiJ_T0059712.1 MGP_CASTEiJ_G0026182.1 mouse_genomes_project 2 183818147 183833313 + Arfgap1 protein_coding processed_transcript MGP_CASTEiJ_T0059713.1 MGP_CASTEiJ_G0026182.1 mouse_genomes_project 2 183818157 183833327 + MGP_CASTEiJ_P0059713 Arfgap1 protein_coding protein_coding MGP_CASTEiJ_T0059714.1 MGP_CASTEiJ_G0026182.1 mouse_genomes_project 2 183818159 183823807 + Arfgap1 protein_coding retained_intron MGP_CASTEiJ_T0059715.1 MGP_CASTEiJ_G0026182.1 mouse_genomes_project 2 183818180 183833178 + MGP_CASTEiJ_P0059715 Arfgap1 protein_coding protein_coding MGP_CASTEiJ_T0059716.1 MGP_CASTEiJ_G0026182.1 mouse_genomes_project 2 183821918 183832340 + MGP_CASTEiJ_P0059716 Arfgap1 protein_coding protein_coding MGP_CASTEiJ_T0059717.1 MGP_CASTEiJ_G0026182.1 mouse_genomes_project 2 183821933 183832237 + MGP_CASTEiJ_P0059717 Arfgap1 protein_coding protein_coding MGP_CASTEiJ_T0059718.1 MGP_CASTEiJ_G0026182.1 mouse_genomes_project 2 183824362 183827612 + Arfgap1 protein_coding retained_intron MGP_CASTEiJ_T0059719.1 MGP_CASTEiJ_G0026182.1 mouse_genomes_project 2 183824379 183828899 + Arfgap1 protein_coding retained_intron MGP_CASTEiJ_T0059720.1 MGP_CASTEiJ_G0026182.1 mouse_genomes_project 2 183824707 183828380 + Arfgap1 protein_coding retained_intron MGP_CASTEiJ_T0059721.1 MGP_CASTEiJ_G0026182.1 mouse_genomes_project 2 183831215 183832264 + Arfgap1 protein_coding processed_transcript MGP_CASTEiJ_T0010092.1 MGP_CASTEiJ_G0008280.1 mouse_genomes_project 2 14353795 14353905 - Gm24933 miRNA miRNA MGP_CASTEiJ_T0058190.1 MGP_CASTEiJ_G0025826.1 mouse_genomes_project 2 155184811 155220105 + MGP_CASTEiJ_P0058190 Angpt4 protein_coding protein_coding MGP_CASTEiJ_T0056410.1 MGP_CASTEiJ_G0025407.1 mouse_genomes_project 2 106043980 106105209 - MGP_CASTEiJ_P0056410 Qser1 protein_coding protein_coding MGP_CASTEiJ_T0055679.1 MGP_CASTEiJ_G0025180.1 mouse_genomes_project 2 87529014 87529953 - MGP_CASTEiJ_P0055679 Olfr1105 protein_coding protein_coding MGP_CASTEiJ_T0010093.1 MGP_CASTEiJ_G0008281.1 mouse_genomes_project 2 14954750 14954863 + Mir6419 miRNA miRNA MGP_CASTEiJ_T0055779.1 MGP_CASTEiJ_G0025266.1 mouse_genomes_project 2 89902347 89903404 - MGP_CASTEiJ_P0055779 Olfr1219 protein_coding protein_coding MGP_CASTEiJ_T0007248.1 MGP_CASTEiJ_G0005960.1 mouse_genomes_project 2 183173965 183189253 - B230312C02Rik lincRNA lincRNA MGP_CASTEiJ_T0052879.1 MGP_CASTEiJ_G0024620.1 mouse_genomes_project 2 22731942 22743710 - MGP_CASTEiJ_P0052879 Nelfb protein_coding protein_coding MGP_CASTEiJ_T0052880.1 MGP_CASTEiJ_G0024620.1 mouse_genomes_project 2 22731943 22743710 - MGP_CASTEiJ_P0052880 Nelfb protein_coding protein_coding MGP_CASTEiJ_T0052881.1 MGP_CASTEiJ_G0024620.1 mouse_genomes_project 2 22731946 22743602 - Nelfb protein_coding retained_intron MGP_CASTEiJ_T0052882.1 MGP_CASTEiJ_G0024620.1 mouse_genomes_project 2 22732267 22736029 - Nelfb protein_coding retained_intron MGP_CASTEiJ_T0052883.1 MGP_CASTEiJ_G0024620.1 mouse_genomes_project 2 22732916 22736157 - MGP_CASTEiJ_P0052883 Nelfb protein_coding protein_coding MGP_CASTEiJ_T0052884.1 MGP_CASTEiJ_G0024620.1 mouse_genomes_project 2 22733385 22735837 - Nelfb protein_coding retained_intron MGP_CASTEiJ_T0052885.1 MGP_CASTEiJ_G0024620.1 mouse_genomes_project 2 22736126 22742947 - MGP_CASTEiJ_P0052885 Nelfb protein_coding protein_coding MGP_CASTEiJ_T0052886.1 MGP_CASTEiJ_G0024620.1 mouse_genomes_project 2 22736186 22742295 - Nelfb protein_coding processed_transcript MGP_CASTEiJ_T0052887.1 MGP_CASTEiJ_G0024620.1 mouse_genomes_project 2 22737398 22742921 - Nelfb protein_coding retained_intron MGP_CASTEiJ_T0055654.1 MGP_CASTEiJ_G0025156.1 mouse_genomes_project 2 86768746 86769685 - MGP_CASTEiJ_P0055654 Olfr1054 protein_coding protein_coding MGP_CASTEiJ_T0100894.1 MGP_CASTEiJ_G0037807.1 mouse_genomes_project 2 105458960 105459087 - Gm22501 snoRNA snoRNA MGP_CASTEiJ_T0054083.1 MGP_CASTEiJ_G0024819.1 mouse_genomes_project 2 30841694 30843511 + MGP_CASTEiJ_P0054083 Ptrh1 protein_coding protein_coding MGP_CASTEiJ_T0054084.1 MGP_CASTEiJ_G0024819.1 mouse_genomes_project 2 30841724 30842664 + Ptrh1 protein_coding processed_transcript MGP_CASTEiJ_T0054085.1 MGP_CASTEiJ_G0024819.1 mouse_genomes_project 2 30841773 30843363 + Ptrh1 protein_coding retained_intron MGP_CASTEiJ_T0098368.1 MGP_CASTEiJ_G0035299.1 mouse_genomes_project 2 11935648 11936270 - pseudogene pseudogene MGP_CASTEiJ_T0100897.1 MGP_CASTEiJ_G0037810.1 mouse_genomes_project 2 109501493 109503864 - Gm23749 snoRNA snoRNA MGP_CASTEiJ_T0055737.1 MGP_CASTEiJ_G0025228.1 mouse_genomes_project 2 88582792 88583734 - MGP_CASTEiJ_P0055737 Olfr73 protein_coding protein_coding MGP_CASTEiJ_T0058239.1 MGP_CASTEiJ_G0025849.1 mouse_genomes_project 2 155914779 155920930 - Defb45 protein_coding processed_transcript MGP_CASTEiJ_T0058240.1 MGP_CASTEiJ_G0025849.1 mouse_genomes_project 2 155914779 155918067 - MGP_CASTEiJ_P0058240 Defb45 protein_coding protein_coding MGP_CASTEiJ_T0052229.1 MGP_CASTEiJ_G0024514.1 mouse_genomes_project 2 2014281 2023311 + MGP_CASTEiJ_P0052229 Ucma protein_coding protein_coding MGP_CASTEiJ_T0052230.1 MGP_CASTEiJ_G0024514.1 mouse_genomes_project 2 2014284 2019017 + Ucma protein_coding processed_transcript MGP_CASTEiJ_T0052231.1 MGP_CASTEiJ_G0024514.1 mouse_genomes_project 2 2014310 2023303 + MGP_CASTEiJ_P0052231 Ucma protein_coding protein_coding MGP_CASTEiJ_T0052232.1 MGP_CASTEiJ_G0024514.1 mouse_genomes_project 2 2014340 2023308 + MGP_CASTEiJ_P0052232 Ucma protein_coding protein_coding MGP_CASTEiJ_T0052233.1 MGP_CASTEiJ_G0024514.1 mouse_genomes_project 2 2014343 2023208 + MGP_CASTEiJ_P0052233 Ucma protein_coding protein_coding MGP_CASTEiJ_T0059039.1 MGP_CASTEiJ_G0026019.1 mouse_genomes_project 2 168343294 168350076 - MGP_CASTEiJ_P0059039 Wfdc15b protein_coding protein_coding MGP_CASTEiJ_T0059040.1 MGP_CASTEiJ_G0026019.1 mouse_genomes_project 2 168343294 168350047 - MGP_CASTEiJ_P0059040 Wfdc15b protein_coding protein_coding MGP_CASTEiJ_T0059041.1 MGP_CASTEiJ_G0026019.1 mouse_genomes_project 2 168343295 168344457 - MGP_CASTEiJ_P0059041 Wfdc15b protein_coding protein_coding MGP_CASTEiJ_T0055256.1 MGP_CASTEiJ_G0025038.1 mouse_genomes_project 2 73719470 73722354 - MGP_CASTEiJ_P0055256 Atp5g3 protein_coding protein_coding MGP_CASTEiJ_T0055257.1 MGP_CASTEiJ_G0025038.1 mouse_genomes_project 2 73719470 73722355 - MGP_CASTEiJ_P0055257 Atp5g3 protein_coding protein_coding MGP_CASTEiJ_T0055258.1 MGP_CASTEiJ_G0025038.1 mouse_genomes_project 2 73719754 73722311 - Atp5g3 protein_coding processed_transcript MGP_CASTEiJ_T0055259.1 MGP_CASTEiJ_G0025038.1 mouse_genomes_project 2 73720206 73721483 - Atp5g3 protein_coding processed_transcript MGP_CASTEiJ_T0055260.1 MGP_CASTEiJ_G0025038.1 mouse_genomes_project 2 73720341 73722320 - Atp5g3 protein_coding processed_transcript MGP_CASTEiJ_T0010192.1 MGP_CASTEiJ_G0008380.1 mouse_genomes_project 2 162589264 162589390 + Gm26141 miRNA miRNA MGP_CASTEiJ_T0007237.1 MGP_CASTEiJ_G0005950.1 mouse_genomes_project 2 175993952 176070852 + Gm14266 lincRNA lincRNA MGP_CASTEiJ_T0007240.1 MGP_CASTEiJ_G0005950.1 mouse_genomes_project 2 176053591 176073020 + Gm14266 lincRNA lincRNA MGP_CASTEiJ_T0007184.1 MGP_CASTEiJ_G0005905.1 mouse_genomes_project 2 160284241 160285244 - Gm14174 lincRNA lincRNA MGP_CASTEiJ_T0055012.1 MGP_CASTEiJ_G0024994.1 mouse_genomes_project 2 68800082 68828607 + MGP_CASTEiJ_P0055012 Dhrs9 protein_coding protein_coding MGP_CASTEiJ_T0058570.1 MGP_CASTEiJ_G0025930.1 mouse_genomes_project 2 159611372 159647468 - MGP_CASTEiJ_P0058570 6430550D23Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058575.1 MGP_CASTEiJ_G0025930.1 mouse_genomes_project 2 159639987 159644001 - MGP_CASTEiJ_P0058575 6430550D23Rik protein_coding protein_coding MGP_CASTEiJ_T0058576.1 MGP_CASTEiJ_G0025930.1 mouse_genomes_project 2 159640154 159647484 - 6430550D23Rik protein_coding retained_intron MGP_CASTEiJ_T0058577.1 MGP_CASTEiJ_G0025930.1 mouse_genomes_project 2 159642039 159647495 - MGP_CASTEiJ_P0058577 6430550D23Rik protein_coding protein_coding MGP_CASTEiJ_T0058578.1 MGP_CASTEiJ_G0025930.1 mouse_genomes_project 2 159642723 159647480 - MGP_CASTEiJ_P0058578 6430550D23Rik protein_coding protein_coding MGP_CASTEiJ_T0058579.1 MGP_CASTEiJ_G0025930.1 mouse_genomes_project 2 159642816 159647538 - MGP_CASTEiJ_P0058579 6430550D23Rik protein_coding protein_coding MGP_CASTEiJ_T0058580.1 MGP_CASTEiJ_G0025930.1 mouse_genomes_project 2 159642903 159644001 - MGP_CASTEiJ_P0058580 6430550D23Rik protein_coding protein_coding MGP_CASTEiJ_T0058581.1 MGP_CASTEiJ_G0025930.1 mouse_genomes_project 2 159642946 159643722 - MGP_CASTEiJ_P0058581 6430550D23Rik protein_coding protein_coding MGP_CASTEiJ_T0058582.1 MGP_CASTEiJ_G0025930.1 mouse_genomes_project 2 159642978 159643722 - MGP_CASTEiJ_P0058582 6430550D23Rik protein_coding protein_coding MGP_CASTEiJ_T0003772.1 MGP_CASTEiJ_G0003382.1 mouse_genomes_project 2 7084015 7085626 + Gm13256 antisense antisense MGP_CASTEiJ_T0052355.1 MGP_CASTEiJ_G0024536.1 mouse_genomes_project 2 7384373 7491545 + MGP_CASTEiJ_P0052355 Itih5 protein_coding protein_coding MGP_CASTEiJ_T0013174.1 MGP_CASTEiJ_G0011337.1 mouse_genomes_project 2 68739502 68740001 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013390.1 MGP_CASTEiJ_G0011553.1 mouse_genomes_project 2 152602134 152602847 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001042.1 MGP_CASTEiJ_G0000978.1 mouse_genomes_project 2 75227069 75227664 - TEC TEC MGP_CASTEiJ_T0013001.1 MGP_CASTEiJ_G0011164.1 mouse_genomes_project 2 22873 23389 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059177.1 MGP_CASTEiJ_G0026061.1 mouse_genomes_project 2 169187813 169222376 - MGP_CASTEiJ_P0059177 Ncoa5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059178.1 MGP_CASTEiJ_G0026061.1 mouse_genomes_project 2 169188695 169222664 - MGP_CASTEiJ_P0059178 Ncoa5 protein_coding protein_coding MGP_CASTEiJ_T0059179.1 MGP_CASTEiJ_G0026061.1 mouse_genomes_project 2 169188698 169222614 - MGP_CASTEiJ_P0059179 Ncoa5 protein_coding protein_coding MGP_CASTEiJ_T0059180.1 MGP_CASTEiJ_G0026061.1 mouse_genomes_project 2 169188701 169222585 - MGP_CASTEiJ_P0059180 Ncoa5 protein_coding protein_coding MGP_CASTEiJ_T0059181.1 MGP_CASTEiJ_G0026061.1 mouse_genomes_project 2 169191031 169193019 - Ncoa5 protein_coding retained_intron MGP_CASTEiJ_T0059182.1 MGP_CASTEiJ_G0026061.1 mouse_genomes_project 2 169198459 169222600 - Ncoa5 protein_coding retained_intron MGP_CASTEiJ_T0059183.1 MGP_CASTEiJ_G0026061.1 mouse_genomes_project 2 169201335 169222626 - MGP_CASTEiJ_P0059183 Ncoa5 protein_coding protein_coding MGP_CASTEiJ_T0059184.1 MGP_CASTEiJ_G0026061.1 mouse_genomes_project 2 169210975 169211517 - Ncoa5 protein_coding processed_transcript MGP_CASTEiJ_T0059185.1 MGP_CASTEiJ_G0026061.1 mouse_genomes_project 2 169211245 169222584 - Ncoa5 protein_coding retained_intron MGP_CASTEiJ_T0007097.1 MGP_CASTEiJ_G0005834.1 mouse_genomes_project 2 106802944 106803805 + 4930527A07Rik lincRNA lincRNA MGP_CASTEiJ_T0017144.1 MGP_CASTEiJ_G0014796.1 mouse_genomes_project 2 160390451 160398824 - 4930405A21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017145.1 MGP_CASTEiJ_G0014796.1 mouse_genomes_project 2 160391851 160398741 - 4930405A21Rik processed_transcript retained_intron MGP_CASTEiJ_T0007253.1 MGP_CASTEiJ_G0005965.1 mouse_genomes_project 2 183739055 183740173 + Gm27032 lincRNA lincRNA MGP_CASTEiJ_T0059699.1 MGP_CASTEiJ_G0026180.1 mouse_genomes_project 2 183777116 183782075 + Birc7 protein_coding retained_intron MGP_CASTEiJ_T0059700.1 MGP_CASTEiJ_G0026180.1 mouse_genomes_project 2 183777116 183782078 + MGP_CASTEiJ_P0059700 Birc7 protein_coding protein_coding MGP_CASTEiJ_T0001006.1 MGP_CASTEiJ_G0000942.1 mouse_genomes_project 2 12061550 12064255 + TEC TEC MGP_CASTEiJ_T0017082.1 MGP_CASTEiJ_G0014766.1 mouse_genomes_project 2 111129393 111130321 + Gm20638 processed_transcript processed_transcript MGP_CASTEiJ_T0059230.1 MGP_CASTEiJ_G0026070.1 mouse_genomes_project 2 169628143 169699462 - MGP_CASTEiJ_P0059230 Slc13a3 protein_coding protein_coding MGP_CASTEiJ_T0059231.1 MGP_CASTEiJ_G0026070.1 mouse_genomes_project 2 169628410 169699462 - MGP_CASTEiJ_P0059231 Slc13a3 protein_coding protein_coding MGP_CASTEiJ_T0059232.1 MGP_CASTEiJ_G0026070.1 mouse_genomes_project 2 169629819 169632189 - Slc13a3 protein_coding retained_intron MGP_CASTEiJ_T0059233.1 MGP_CASTEiJ_G0026070.1 mouse_genomes_project 2 169634989 169643386 - Slc13a3 protein_coding retained_intron MGP_CASTEiJ_T0059234.1 MGP_CASTEiJ_G0026070.1 mouse_genomes_project 2 169668455 169699431 - Slc13a3 protein_coding retained_intron MGP_CASTEiJ_T0017010.1 MGP_CASTEiJ_G0014722.1 mouse_genomes_project 2 27536581 27538943 - processed_transcript processed_transcript MGP_CASTEiJ_T0006952.1 MGP_CASTEiJ_G0005719.1 mouse_genomes_project 2 6782244 6789181 - Gm13218 lincRNA lincRNA MGP_CASTEiJ_T0017064.1 MGP_CASTEiJ_G0014759.1 mouse_genomes_project 2 93877826 93937775 - Gm13791 processed_transcript processed_transcript MGP_CASTEiJ_T0058773.1 MGP_CASTEiJ_G0025958.1 mouse_genomes_project 2 161022412 161035011 + Rpn2 protein_coding processed_transcript MGP_CASTEiJ_T0058774.1 MGP_CASTEiJ_G0025958.1 mouse_genomes_project 2 161022454 161071770 + MGP_CASTEiJ_P0058774 Rpn2 protein_coding protein_coding MGP_CASTEiJ_T0058775.1 MGP_CASTEiJ_G0025958.1 mouse_genomes_project 2 161022541 161071770 + MGP_CASTEiJ_P0058775 Rpn2 protein_coding protein_coding MGP_CASTEiJ_T0058776.1 MGP_CASTEiJ_G0025958.1 mouse_genomes_project 2 161022821 161071507 + Rpn2 protein_coding processed_transcript MGP_CASTEiJ_T0058777.1 MGP_CASTEiJ_G0025958.1 mouse_genomes_project 2 161022964 161036159 + Rpn2 protein_coding processed_transcript MGP_CASTEiJ_T0058778.1 MGP_CASTEiJ_G0025958.1 mouse_genomes_project 2 161028901 161071186 + Rpn2 protein_coding processed_transcript MGP_CASTEiJ_T0058779.1 MGP_CASTEiJ_G0025958.1 mouse_genomes_project 2 161040449 161040950 + Rpn2 protein_coding processed_transcript MGP_CASTEiJ_T0058780.1 MGP_CASTEiJ_G0025958.1 mouse_genomes_project 2 161060173 161061838 + Rpn2 protein_coding processed_transcript MGP_CASTEiJ_T0058781.1 MGP_CASTEiJ_G0025958.1 mouse_genomes_project 2 161061806 161067926 + Rpn2 protein_coding retained_intron MGP_CASTEiJ_T0058782.1 MGP_CASTEiJ_G0025958.1 mouse_genomes_project 2 161065276 161067615 + Rpn2 protein_coding retained_intron MGP_CASTEiJ_T0007251.1 MGP_CASTEiJ_G0005963.1 mouse_genomes_project 2 183676058 183690610 + Gm14344 lincRNA lincRNA MGP_CASTEiJ_T0052370.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8757375 8842978 - MGP_CASTEiJ_P0052370 Pfkfb3 protein_coding protein_coding MGP_CASTEiJ_T0052371.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8757735 8787775 - MGP_CASTEiJ_P0052371 Pfkfb3 protein_coding protein_coding MGP_CASTEiJ_T0052372.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8757768 8787775 - MGP_CASTEiJ_P0052372 Pfkfb3 protein_coding protein_coding MGP_CASTEiJ_T0052373.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8757770 8787775 - MGP_CASTEiJ_P0052373 Pfkfb3 protein_coding protein_coding MGP_CASTEiJ_T0052374.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8757770 8842823 - MGP_CASTEiJ_P0052374 Pfkfb3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052375.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8757772 8784088 - Pfkfb3 protein_coding processed_transcript MGP_CASTEiJ_T0052376.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8760331 8787775 - MGP_CASTEiJ_P0052376 Pfkfb3 protein_coding protein_coding MGP_CASTEiJ_T0052377.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8760331 8787374 - MGP_CASTEiJ_P0052377 Pfkfb3 protein_coding protein_coding MGP_CASTEiJ_T0052378.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8760331 8787775 - MGP_CASTEiJ_P0052378 Pfkfb3 protein_coding protein_coding MGP_CASTEiJ_T0052379.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8760331 8787775 - MGP_CASTEiJ_P0052379 Pfkfb3 protein_coding protein_coding MGP_CASTEiJ_T0052380.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8761686 8787764 - MGP_CASTEiJ_P0052380 Pfkfb3 protein_coding protein_coding MGP_CASTEiJ_T0052381.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8761686 8787764 - MGP_CASTEiJ_P0052381 Pfkfb3 protein_coding protein_coding MGP_CASTEiJ_T0052382.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8763909 8787775 - MGP_CASTEiJ_P0052382 Pfkfb3 protein_coding protein_coding MGP_CASTEiJ_T0052383.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8763921 8787775 - MGP_CASTEiJ_P0052383 Pfkfb3 protein_coding protein_coding MGP_CASTEiJ_T0052384.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8765806 8787749 - Pfkfb3 protein_coding retained_intron MGP_CASTEiJ_T0052385.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8766869 8767975 - Pfkfb3 protein_coding retained_intron MGP_CASTEiJ_T0052386.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8776154 8787691 - Pfkfb3 protein_coding processed_transcript MGP_CASTEiJ_T0052387.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8778117 8787471 - Pfkfb3 protein_coding retained_intron MGP_CASTEiJ_T0052388.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8778415 8784054 - Pfkfb3 protein_coding processed_transcript MGP_CASTEiJ_T0052389.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8778442 8786976 - Pfkfb3 protein_coding retained_intron MGP_CASTEiJ_T0052390.1 MGP_CASTEiJ_G0024539.1 mouse_genomes_project 2 8779728 8786551 - Pfkfb3 protein_coding processed_transcript MGP_CASTEiJ_T0013090.1 MGP_CASTEiJ_G0011253.1 mouse_genomes_project 2 35208661 35209070 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056986.1 MGP_CASTEiJ_G0025556.1 mouse_genomes_project 2 122663100 122770136 - MGP_CASTEiJ_P0056986 Ttbk2 protein_coding protein_coding MGP_CASTEiJ_T0056987.1 MGP_CASTEiJ_G0025556.1 mouse_genomes_project 2 122663100 122769938 - MGP_CASTEiJ_P0056987 Ttbk2 protein_coding protein_coding MGP_CASTEiJ_T0056988.1 MGP_CASTEiJ_G0025556.1 mouse_genomes_project 2 122663100 122769950 - MGP_CASTEiJ_P0056988 Ttbk2 protein_coding protein_coding MGP_CASTEiJ_T0056989.1 MGP_CASTEiJ_G0025556.1 mouse_genomes_project 2 122675943 122769922 - MGP_CASTEiJ_P0056989 Ttbk2 protein_coding protein_coding MGP_CASTEiJ_T0056990.1 MGP_CASTEiJ_G0025556.1 mouse_genomes_project 2 122681168 122769896 - MGP_CASTEiJ_P0056990 Ttbk2 protein_coding protein_coding MGP_CASTEiJ_T0056991.1 MGP_CASTEiJ_G0025556.1 mouse_genomes_project 2 122720777 122769967 - Ttbk2 protein_coding processed_transcript MGP_CASTEiJ_T0056163.1 MGP_CASTEiJ_G0025361.1 mouse_genomes_project 2 94471412 94518039 - MGP_CASTEiJ_P0056163 Cd82 protein_coding protein_coding MGP_CASTEiJ_T0056164.1 MGP_CASTEiJ_G0025361.1 mouse_genomes_project 2 94471412 94518130 - MGP_CASTEiJ_P0056164 Cd82 protein_coding protein_coding MGP_CASTEiJ_T0056165.1 MGP_CASTEiJ_G0025361.1 mouse_genomes_project 2 94471417 94518574 - MGP_CASTEiJ_P0056165 Cd82 protein_coding protein_coding MGP_CASTEiJ_T0056166.1 MGP_CASTEiJ_G0025361.1 mouse_genomes_project 2 94471455 94473186 - Cd82 protein_coding processed_transcript MGP_CASTEiJ_T0056167.1 MGP_CASTEiJ_G0025361.1 mouse_genomes_project 2 94472742 94508307 - MGP_CASTEiJ_P0056167 Cd82 protein_coding protein_coding MGP_CASTEiJ_T0056168.1 MGP_CASTEiJ_G0025361.1 mouse_genomes_project 2 94473555 94518014 - MGP_CASTEiJ_P0056168 Cd82 protein_coding protein_coding MGP_CASTEiJ_T0056169.1 MGP_CASTEiJ_G0025361.1 mouse_genomes_project 2 94474714 94508311 - MGP_CASTEiJ_P0056169 Cd82 protein_coding protein_coding MGP_CASTEiJ_T0056170.1 MGP_CASTEiJ_G0025361.1 mouse_genomes_project 2 94474714 94517540 - MGP_CASTEiJ_P0056170 Cd82 protein_coding protein_coding MGP_CASTEiJ_T0056171.1 MGP_CASTEiJ_G0025361.1 mouse_genomes_project 2 94484587 94518768 - MGP_CASTEiJ_P0056171 Cd82 protein_coding protein_coding MGP_CASTEiJ_T0056172.1 MGP_CASTEiJ_G0025361.1 mouse_genomes_project 2 94487911 94518071 - Cd82 protein_coding processed_transcript MGP_CASTEiJ_T0056173.1 MGP_CASTEiJ_G0025361.1 mouse_genomes_project 2 94491800 94518540 - MGP_CASTEiJ_P0056173 Cd82 protein_coding protein_coding MGP_CASTEiJ_T0007133.1 MGP_CASTEiJ_G0005863.1 mouse_genomes_project 2 126902684 126905156 + Gm13994 lincRNA lincRNA MGP_CASTEiJ_T0055380.1 MGP_CASTEiJ_G0025067.1 mouse_genomes_project 2 77402479 77706683 - MGP_CASTEiJ_P0055380 Zfp385b protein_coding protein_coding MGP_CASTEiJ_T0055381.1 MGP_CASTEiJ_G0025067.1 mouse_genomes_project 2 77402479 77726445 - MGP_CASTEiJ_P0055381 Zfp385b protein_coding protein_coding MGP_CASTEiJ_T0055382.1 MGP_CASTEiJ_G0025067.1 mouse_genomes_project 2 77402479 77516199 - MGP_CASTEiJ_P0055382 Zfp385b protein_coding protein_coding MGP_CASTEiJ_T0055383.1 MGP_CASTEiJ_G0025067.1 mouse_genomes_project 2 77402943 77829940 - MGP_CASTEiJ_P0055383 Zfp385b protein_coding protein_coding MGP_CASTEiJ_T0055384.1 MGP_CASTEiJ_G0025067.1 mouse_genomes_project 2 77407759 77516195 - Zfp385b protein_coding processed_transcript MGP_CASTEiJ_T0055385.1 MGP_CASTEiJ_G0025067.1 mouse_genomes_project 2 77443765 77706683 - Zfp385b protein_coding processed_transcript MGP_CASTEiJ_T0055386.1 MGP_CASTEiJ_G0025067.1 mouse_genomes_project 2 77465912 77516116 - Zfp385b protein_coding processed_transcript MGP_CASTEiJ_T0055387.1 MGP_CASTEiJ_G0025067.1 mouse_genomes_project 2 77498266 77706790 - Zfp385b protein_coding processed_transcript MGP_CASTEiJ_T0055388.1 MGP_CASTEiJ_G0025067.1 mouse_genomes_project 2 77523730 77830383 - MGP_CASTEiJ_P0055388 Zfp385b protein_coding protein_coding MGP_CASTEiJ_T0055389.1 MGP_CASTEiJ_G0025067.1 mouse_genomes_project 2 77524480 77562731 - Zfp385b protein_coding processed_transcript MGP_CASTEiJ_T0055390.1 MGP_CASTEiJ_G0025067.1 mouse_genomes_project 2 77830360 77832758 - Zfp385b protein_coding processed_transcript MGP_CASTEiJ_T0003774.1 MGP_CASTEiJ_G0003384.1 mouse_genomes_project 2 8806073 8818528 + Gm10851 antisense antisense MGP_CASTEiJ_T0055213.1 MGP_CASTEiJ_G0025032.1 mouse_genomes_project 2 73085672 73114230 + MGP_CASTEiJ_P0055213 Scrn3 protein_coding protein_coding MGP_CASTEiJ_T0055214.1 MGP_CASTEiJ_G0025032.1 mouse_genomes_project 2 73085725 73095771 + MGP_CASTEiJ_P0055214 Scrn3 protein_coding protein_coding MGP_CASTEiJ_T0055215.1 MGP_CASTEiJ_G0025032.1 mouse_genomes_project 2 73085730 73088851 + Scrn3 protein_coding processed_transcript MGP_CASTEiJ_T0055216.1 MGP_CASTEiJ_G0025032.1 mouse_genomes_project 2 73085730 73104687 + Scrn3 protein_coding processed_transcript MGP_CASTEiJ_T0055217.1 MGP_CASTEiJ_G0025032.1 mouse_genomes_project 2 73085747 73097001 + Scrn3 protein_coding processed_transcript MGP_CASTEiJ_T0055218.1 MGP_CASTEiJ_G0025032.1 mouse_genomes_project 2 73094360 73111212 + Scrn3 protein_coding processed_transcript MGP_CASTEiJ_T0013180.1 MGP_CASTEiJ_G0011343.1 mouse_genomes_project 2 72026305 72026599 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006947.1 MGP_CASTEiJ_G0005716.1 mouse_genomes_project 2 4840640 4903008 - Gm13211 lincRNA lincRNA MGP_CASTEiJ_T0004029.1 MGP_CASTEiJ_G0003571.1 mouse_genomes_project 2 167777828 167788708 - Gm16316 antisense antisense MGP_CASTEiJ_T0017083.1 MGP_CASTEiJ_G0014767.1 mouse_genomes_project 2 111376215 111387142 - Platr8 processed_transcript processed_transcript MGP_CASTEiJ_T0001017.1 MGP_CASTEiJ_G0000953.1 mouse_genomes_project 2 30523067 30527334 + TEC TEC MGP_CASTEiJ_T0057934.1 MGP_CASTEiJ_G0025761.1 mouse_genomes_project 2 147288330 147312230 - MGP_CASTEiJ_P0057934 Snx5 protein_coding protein_coding MGP_CASTEiJ_T0057935.1 MGP_CASTEiJ_G0025761.1 mouse_genomes_project 2 147288330 147312564 - MGP_CASTEiJ_P0057935 Snx5 protein_coding protein_coding MGP_CASTEiJ_T0057936.1 MGP_CASTEiJ_G0025761.1 mouse_genomes_project 2 147289267 147292330 - Snx5 protein_coding processed_transcript MGP_CASTEiJ_T0057937.1 MGP_CASTEiJ_G0025761.1 mouse_genomes_project 2 147289319 147291302 - Snx5 protein_coding processed_transcript MGP_CASTEiJ_T0057938.1 MGP_CASTEiJ_G0025761.1 mouse_genomes_project 2 147292349 147294028 - Snx5 protein_coding processed_transcript MGP_CASTEiJ_T0057939.1 MGP_CASTEiJ_G0025761.1 mouse_genomes_project 2 147293315 147294007 - Snx5 protein_coding processed_transcript MGP_CASTEiJ_T0057940.1 MGP_CASTEiJ_G0025761.1 mouse_genomes_project 2 147293418 147300525 - Snx5 protein_coding processed_transcript MGP_CASTEiJ_T0057941.1 MGP_CASTEiJ_G0025761.1 mouse_genomes_project 2 147311101 147312442 - Snx5 protein_coding processed_transcript MGP_CASTEiJ_T0055448.1 MGP_CASTEiJ_G0025077.1 mouse_genomes_project 2 80470057 80481514 + Dnajc10 protein_coding processed_transcript MGP_CASTEiJ_T0055449.1 MGP_CASTEiJ_G0025077.1 mouse_genomes_project 2 80470057 80511621 + MGP_CASTEiJ_P0055449 Dnajc10 protein_coding protein_coding MGP_CASTEiJ_T0055450.1 MGP_CASTEiJ_G0025077.1 mouse_genomes_project 2 80488061 80490632 + Dnajc10 protein_coding processed_transcript MGP_CASTEiJ_T0055451.1 MGP_CASTEiJ_G0025077.1 mouse_genomes_project 2 80490531 80498413 + Dnajc10 protein_coding processed_transcript MGP_CASTEiJ_T0055452.1 MGP_CASTEiJ_G0025077.1 mouse_genomes_project 2 80505230 80508519 + Dnajc10 protein_coding processed_transcript MGP_CASTEiJ_T0056583.1 MGP_CASTEiJ_G0025474.1 mouse_genomes_project 2 113979329 113980928 - MGP_CASTEiJ_P0056583 Chrm5 protein_coding protein_coding MGP_CASTEiJ_T0007077.1 MGP_CASTEiJ_G0005821.1 mouse_genomes_project 2 94508446 94525505 + Gm10804 lincRNA lincRNA MGP_CASTEiJ_T0007078.1 MGP_CASTEiJ_G0005821.1 mouse_genomes_project 2 94508447 94512359 + Gm10804 lincRNA lincRNA MGP_CASTEiJ_T0007079.1 MGP_CASTEiJ_G0005821.1 mouse_genomes_project 2 94508448 94522035 + Gm10804 lincRNA lincRNA MGP_CASTEiJ_T0007080.1 MGP_CASTEiJ_G0005821.1 mouse_genomes_project 2 94524074 94524311 + Gm10804 lincRNA lincRNA MGP_CASTEiJ_T0013078.1 MGP_CASTEiJ_G0011241.1 mouse_genomes_project 2 29629926 29630874 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058534.1 MGP_CASTEiJ_G0025924.1 mouse_genomes_project 2 159440502 159450241 - MGP_CASTEiJ_P0058534 Eif6 protein_coding protein_coding MGP_CASTEiJ_T0058535.1 MGP_CASTEiJ_G0025924.1 mouse_genomes_project 2 159440507 159444878 - Eif6 protein_coding processed_transcript MGP_CASTEiJ_T0058536.1 MGP_CASTEiJ_G0025924.1 mouse_genomes_project 2 159440703 159449751 - MGP_CASTEiJ_P0058536 Eif6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058537.1 MGP_CASTEiJ_G0025924.1 mouse_genomes_project 2 159445234 159449751 - Eif6 protein_coding retained_intron MGP_CASTEiJ_T0058538.1 MGP_CASTEiJ_G0025924.1 mouse_genomes_project 2 159445234 159449751 - MGP_CASTEiJ_P0058538 Eif6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058539.1 MGP_CASTEiJ_G0025924.1 mouse_genomes_project 2 159446275 159450082 - MGP_CASTEiJ_P0058539 Eif6 protein_coding protein_coding MGP_CASTEiJ_T0058540.1 MGP_CASTEiJ_G0025924.1 mouse_genomes_project 2 159448478 159449979 - MGP_CASTEiJ_P0058540 Eif6 protein_coding protein_coding MGP_CASTEiJ_T0007120.1 MGP_CASTEiJ_G0005852.1 mouse_genomes_project 2 118684503 118688385 - Gm29340 lincRNA lincRNA MGP_CASTEiJ_T0003802.1 MGP_CASTEiJ_G0003406.1 mouse_genomes_project 2 23992039 23997768 + Gm13563 antisense antisense MGP_CASTEiJ_T0003803.1 MGP_CASTEiJ_G0003406.1 mouse_genomes_project 2 23996062 23998304 + Gm13563 antisense antisense MGP_CASTEiJ_T0003804.1 MGP_CASTEiJ_G0003406.1 mouse_genomes_project 2 23997966 23999528 + Gm13563 antisense antisense MGP_CASTEiJ_T0053763.1 MGP_CASTEiJ_G0024775.1 mouse_genomes_project 2 28880617 28886594 + MGP_CASTEiJ_P0053763 Tor1b protein_coding protein_coding MGP_CASTEiJ_T0053764.1 MGP_CASTEiJ_G0024775.1 mouse_genomes_project 2 28880637 28886590 + Tor1b protein_coding retained_intron MGP_CASTEiJ_T0053765.1 MGP_CASTEiJ_G0024775.1 mouse_genomes_project 2 28880649 28884076 + MGP_CASTEiJ_P0053765 Tor1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053766.1 MGP_CASTEiJ_G0024775.1 mouse_genomes_project 2 28880830 28884567 + Tor1b protein_coding retained_intron MGP_CASTEiJ_T0053767.1 MGP_CASTEiJ_G0024775.1 mouse_genomes_project 2 28880845 28886591 + MGP_CASTEiJ_P0053767 Tor1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053768.1 MGP_CASTEiJ_G0024775.1 mouse_genomes_project 2 28881407 28884455 + MGP_CASTEiJ_P0053768 Tor1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053769.1 MGP_CASTEiJ_G0024775.1 mouse_genomes_project 2 28882883 28884694 + Tor1b protein_coding processed_transcript MGP_CASTEiJ_T0059112.1 MGP_CASTEiJ_G0026049.1 mouse_genomes_project 2 168959758 168966389 + MGP_CASTEiJ_P0059112 Snx21 protein_coding protein_coding MGP_CASTEiJ_T0059113.1 MGP_CASTEiJ_G0026049.1 mouse_genomes_project 2 168959926 168967711 + MGP_CASTEiJ_P0059113 Snx21 protein_coding protein_coding MGP_CASTEiJ_T0059114.1 MGP_CASTEiJ_G0026049.1 mouse_genomes_project 2 168959926 168966954 + MGP_CASTEiJ_P0059114 Snx21 protein_coding protein_coding MGP_CASTEiJ_T0059115.1 MGP_CASTEiJ_G0026049.1 mouse_genomes_project 2 168959952 168961568 + MGP_CASTEiJ_P0059115 Snx21 protein_coding protein_coding MGP_CASTEiJ_T0059116.1 MGP_CASTEiJ_G0026049.1 mouse_genomes_project 2 168960729 168966526 + MGP_CASTEiJ_P0059116 Snx21 protein_coding protein_coding MGP_CASTEiJ_T0059117.1 MGP_CASTEiJ_G0026049.1 mouse_genomes_project 2 168964304 168967717 + Snx21 protein_coding retained_intron MGP_CASTEiJ_T0059118.1 MGP_CASTEiJ_G0026049.1 mouse_genomes_project 2 168965553 168967709 + Snx21 protein_coding processed_transcript MGP_CASTEiJ_T0010116.1 MGP_CASTEiJ_G0008304.1 mouse_genomes_project 2 30046014 30046077 + Mir7674 miRNA miRNA MGP_CASTEiJ_T0007131.1 MGP_CASTEiJ_G0005861.1 mouse_genomes_project 2 126302064 126309113 - 4930517E11Rik lincRNA lincRNA MGP_CASTEiJ_T0056278.1 MGP_CASTEiJ_G0025382.1 mouse_genomes_project 2 103584682 103587812 - MGP_CASTEiJ_P0056278 Fjx1 protein_coding protein_coding MGP_CASTEiJ_T0013440.1 MGP_CASTEiJ_G0011603.1 mouse_genomes_project 2 171456564 171457119 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011174.1 MGP_CASTEiJ_G0009362.1 mouse_genomes_project 2 73631356 73631523 - Gm27421 misc_RNA misc_RNA MGP_CASTEiJ_T0055678.1 MGP_CASTEiJ_G0025179.1 mouse_genomes_project 2 87516338 87517271 - MGP_CASTEiJ_P0055678 Olfr1104 protein_coding protein_coding MGP_CASTEiJ_T0058007.1 MGP_CASTEiJ_G0025776.1 mouse_genomes_project 2 149028964 149046257 - MGP_CASTEiJ_P0058007 Crnkl1 protein_coding protein_coding MGP_CASTEiJ_T0058008.1 MGP_CASTEiJ_G0025776.1 mouse_genomes_project 2 149041635 149042634 - Crnkl1 protein_coding retained_intron MGP_CASTEiJ_T0058009.1 MGP_CASTEiJ_G0025776.1 mouse_genomes_project 2 149043214 149045957 - Crnkl1 protein_coding retained_intron MGP_CASTEiJ_T0058954.1 MGP_CASTEiJ_G0025993.1 mouse_genomes_project 2 166992248 167021317 + MGP_CASTEiJ_P0058954 Sgk2 protein_coding protein_coding MGP_CASTEiJ_T0058955.1 MGP_CASTEiJ_G0025993.1 mouse_genomes_project 2 166992420 167021316 + MGP_CASTEiJ_P0058955 Sgk2 protein_coding protein_coding MGP_CASTEiJ_T0058956.1 MGP_CASTEiJ_G0025993.1 mouse_genomes_project 2 167003036 167011656 + Sgk2 protein_coding retained_intron MGP_CASTEiJ_T0055437.1 MGP_CASTEiJ_G0025075.1 mouse_genomes_project 2 79967541 80266081 - MGP_CASTEiJ_P0055437 Pde1a protein_coding protein_coding MGP_CASTEiJ_T0055438.1 MGP_CASTEiJ_G0025075.1 mouse_genomes_project 2 79967542 80265976 - MGP_CASTEiJ_P0055438 Pde1a protein_coding protein_coding MGP_CASTEiJ_T0055439.1 MGP_CASTEiJ_G0025075.1 mouse_genomes_project 2 79967550 80266081 - MGP_CASTEiJ_P0055439 Pde1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055440.1 MGP_CASTEiJ_G0025075.1 mouse_genomes_project 2 79969628 80266600 - MGP_CASTEiJ_P0055440 Pde1a protein_coding protein_coding MGP_CASTEiJ_T0055441.1 MGP_CASTEiJ_G0025075.1 mouse_genomes_project 2 79988251 80042067 - MGP_CASTEiJ_P0055441 Pde1a protein_coding protein_coding MGP_CASTEiJ_T0055442.1 MGP_CASTEiJ_G0025075.1 mouse_genomes_project 2 79988251 80042033 - MGP_CASTEiJ_P0055442 Pde1a protein_coding protein_coding MGP_CASTEiJ_T0055443.1 MGP_CASTEiJ_G0025075.1 mouse_genomes_project 2 79988251 80042067 - MGP_CASTEiJ_P0055443 Pde1a protein_coding protein_coding MGP_CASTEiJ_T0055444.1 MGP_CASTEiJ_G0025075.1 mouse_genomes_project 2 79996793 80063833 - MGP_CASTEiJ_P0055444 Pde1a protein_coding protein_coding MGP_CASTEiJ_T0055445.1 MGP_CASTEiJ_G0025075.1 mouse_genomes_project 2 80038629 80171786 - Pde1a protein_coding processed_transcript MGP_CASTEiJ_T0055446.1 MGP_CASTEiJ_G0025075.1 mouse_genomes_project 2 80046930 80266600 - Pde1a protein_coding processed_transcript MGP_CASTEiJ_T0057411.1 MGP_CASTEiJ_G0025642.1 mouse_genomes_project 2 129815443 129830534 - MGP_CASTEiJ_P0057411 Prom2 protein_coding protein_coding MGP_CASTEiJ_T0057412.1 MGP_CASTEiJ_G0025642.1 mouse_genomes_project 2 129815925 129830452 - MGP_CASTEiJ_P0057412 Prom2 protein_coding protein_coding MGP_CASTEiJ_T0057413.1 MGP_CASTEiJ_G0025642.1 mouse_genomes_project 2 129823850 129824282 - Prom2 protein_coding processed_transcript MGP_CASTEiJ_T0057414.1 MGP_CASTEiJ_G0025642.1 mouse_genomes_project 2 129829324 129830481 - Prom2 protein_coding retained_intron MGP_CASTEiJ_T0013060.1 MGP_CASTEiJ_G0011223.1 mouse_genomes_project 2 20958908 20959321 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017024.1 MGP_CASTEiJ_G0014730.1 mouse_genomes_project 2 36949224 36953252 + Gm13587 processed_transcript processed_transcript MGP_CASTEiJ_T0010129.1 MGP_CASTEiJ_G0008317.1 mouse_genomes_project 2 37141521 37141610 + Mir181b-2 miRNA miRNA MGP_CASTEiJ_T0055337.1 MGP_CASTEiJ_G0025063.1 mouse_genomes_project 2 76616543 76637954 + MGP_CASTEiJ_P0055337 Plekha3 protein_coding protein_coding MGP_CASTEiJ_T0055338.1 MGP_CASTEiJ_G0025063.1 mouse_genomes_project 2 76631006 76633896 + Plekha3 protein_coding processed_transcript MGP_CASTEiJ_T0013389.1 MGP_CASTEiJ_G0011552.1 mouse_genomes_project 2 152572769 152574487 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056477.1 MGP_CASTEiJ_G0025420.1 mouse_genomes_project 2 108344682 108357447 - MGP_CASTEiJ_P0056477 Arl14ep protein_coding protein_coding MGP_CASTEiJ_T0056478.1 MGP_CASTEiJ_G0025420.1 mouse_genomes_project 2 108346595 108352540 - MGP_CASTEiJ_P0056478 Arl14ep protein_coding protein_coding MGP_CASTEiJ_T0056479.1 MGP_CASTEiJ_G0025420.1 mouse_genomes_project 2 108347357 108351426 - Arl14ep protein_coding retained_intron MGP_CASTEiJ_T0056480.1 MGP_CASTEiJ_G0025420.1 mouse_genomes_project 2 108349537 108357420 - Arl14ep protein_coding retained_intron MGP_CASTEiJ_T0013339.1 MGP_CASTEiJ_G0011502.1 mouse_genomes_project 2 132830950 132831778 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100881.1 MGP_CASTEiJ_G0037794.1 mouse_genomes_project 2 61913016 61913152 - Gm22020 snoRNA snoRNA MGP_CASTEiJ_T0057278.1 MGP_CASTEiJ_G0025614.1 mouse_genomes_project 2 128060563 128087962 - MGP_CASTEiJ_P0057278 Cops2 protein_coding protein_coding MGP_CASTEiJ_T0057279.1 MGP_CASTEiJ_G0025614.1 mouse_genomes_project 2 128061858 128087862 - MGP_CASTEiJ_P0057279 Cops2 protein_coding protein_coding MGP_CASTEiJ_T0057280.1 MGP_CASTEiJ_G0025614.1 mouse_genomes_project 2 128061861 128087962 - MGP_CASTEiJ_P0057280 Cops2 protein_coding protein_coding MGP_CASTEiJ_T0057281.1 MGP_CASTEiJ_G0025614.1 mouse_genomes_project 2 128066206 128087871 - MGP_CASTEiJ_P0057281 Cops2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057282.1 MGP_CASTEiJ_G0025614.1 mouse_genomes_project 2 128071851 128087819 - Cops2 protein_coding processed_transcript MGP_CASTEiJ_T0057283.1 MGP_CASTEiJ_G0025614.1 mouse_genomes_project 2 128078588 128087886 - Cops2 protein_coding processed_transcript MGP_CASTEiJ_T0100878.1 MGP_CASTEiJ_G0037791.1 mouse_genomes_project 2 56574494 56574645 - Gm25388 snoRNA snoRNA MGP_CASTEiJ_T0003989.1 MGP_CASTEiJ_G0003537.1 mouse_genomes_project 2 147374782 147375964 + 1700108N11Rik antisense antisense MGP_CASTEiJ_T0053560.1 MGP_CASTEiJ_G0024746.1 mouse_genomes_project 2 27742124 27767951 + MGP_CASTEiJ_P0053560 Gle1 protein_coding protein_coding MGP_CASTEiJ_T0053561.1 MGP_CASTEiJ_G0024746.1 mouse_genomes_project 2 27742126 27745497 + Gle1 protein_coding retained_intron MGP_CASTEiJ_T0053562.1 MGP_CASTEiJ_G0024746.1 mouse_genomes_project 2 27742221 27746037 + Gle1 protein_coding retained_intron MGP_CASTEiJ_T0053563.1 MGP_CASTEiJ_G0024746.1 mouse_genomes_project 2 27748953 27750378 + Gle1 protein_coding retained_intron MGP_CASTEiJ_T0053564.1 MGP_CASTEiJ_G0024746.1 mouse_genomes_project 2 27749316 27751365 + Gle1 protein_coding retained_intron MGP_CASTEiJ_T0053565.1 MGP_CASTEiJ_G0024746.1 mouse_genomes_project 2 27755616 27757251 + Gle1 protein_coding retained_intron MGP_CASTEiJ_T0053566.1 MGP_CASTEiJ_G0024746.1 mouse_genomes_project 2 27763044 27765794 + Gle1 protein_coding retained_intron MGP_CASTEiJ_T0102213.1 MGP_CASTEiJ_G0038938.1 mouse_genomes_project 2 85454562 85457105 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010159.1 MGP_CASTEiJ_G0008347.1 mouse_genomes_project 2 105671333 105671413 - Mir1902 miRNA miRNA MGP_CASTEiJ_T0058231.1 MGP_CASTEiJ_G0025841.1 mouse_genomes_project 2 155788825 155791788 + MGP_CASTEiJ_P0058231 Defb20 protein_coding protein_coding MGP_CASTEiJ_T0004049.1 MGP_CASTEiJ_G0003587.1 mouse_genomes_project 2 176884670 176888254 + Gm14271 antisense antisense MGP_CASTEiJ_T0057790.1 MGP_CASTEiJ_G0025727.1 mouse_genomes_project 2 135441250 135465944 + MGP_CASTEiJ_P0057790 Mcm8 protein_coding protein_coding MGP_CASTEiJ_T0057791.1 MGP_CASTEiJ_G0025727.1 mouse_genomes_project 2 135441250 135466226 + MGP_CASTEiJ_P0057791 Mcm8 protein_coding protein_coding MGP_CASTEiJ_T0057792.1 MGP_CASTEiJ_G0025727.1 mouse_genomes_project 2 135441333 135443138 + Mcm8 protein_coding processed_transcript MGP_CASTEiJ_T0059653.1 MGP_CASTEiJ_G0026167.1 mouse_genomes_project 2 183075715 183087974 - MGP_CASTEiJ_P0059653 Rbbp8nl protein_coding protein_coding MGP_CASTEiJ_T0058893.1 MGP_CASTEiJ_G0025984.1 mouse_genomes_project 2 164579880 164665065 + MGP_CASTEiJ_P0058893 Top1 protein_coding protein_coding MGP_CASTEiJ_T0058894.1 MGP_CASTEiJ_G0025984.1 mouse_genomes_project 2 164579972 164584108 + Top1 protein_coding processed_transcript MGP_CASTEiJ_T0058895.1 MGP_CASTEiJ_G0025984.1 mouse_genomes_project 2 164580164 164663934 + MGP_CASTEiJ_P0058895 Top1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058896.1 MGP_CASTEiJ_G0025984.1 mouse_genomes_project 2 164606667 164623048 + Top1 protein_coding retained_intron MGP_CASTEiJ_T0058897.1 MGP_CASTEiJ_G0025984.1 mouse_genomes_project 2 164623765 164632597 + Top1 protein_coding retained_intron MGP_CASTEiJ_T0058898.1 MGP_CASTEiJ_G0025984.1 mouse_genomes_project 2 164640780 164642317 + Top1 protein_coding processed_transcript MGP_CASTEiJ_T0058899.1 MGP_CASTEiJ_G0025984.1 mouse_genomes_project 2 164660000 164663695 + Top1 protein_coding retained_intron MGP_CASTEiJ_T0053998.1 MGP_CASTEiJ_G0024805.1 mouse_genomes_project 2 30576400 30611000 + Fam102a protein_coding retained_intron MGP_CASTEiJ_T0053999.1 MGP_CASTEiJ_G0024805.1 mouse_genomes_project 2 30576401 30577259 + MGP_CASTEiJ_P0053999 Fam102a protein_coding protein_coding MGP_CASTEiJ_T0054000.1 MGP_CASTEiJ_G0024805.1 mouse_genomes_project 2 30576427 30611006 + MGP_CASTEiJ_P0054000 Fam102a protein_coding protein_coding MGP_CASTEiJ_T0054001.1 MGP_CASTEiJ_G0024805.1 mouse_genomes_project 2 30576801 30599393 + MGP_CASTEiJ_P0054001 Fam102a protein_coding protein_coding MGP_CASTEiJ_T0054002.1 MGP_CASTEiJ_G0024805.1 mouse_genomes_project 2 30581257 30601431 + Fam102a protein_coding processed_transcript MGP_CASTEiJ_T0056481.1 MGP_CASTEiJ_G0025421.1 mouse_genomes_project 2 108450077 108454861 - MGP_CASTEiJ_P0056481 Fshb protein_coding protein_coding MGP_CASTEiJ_T0101871.1 MGP_CASTEiJ_G0026198.1 mouse_genomes_project 2 184256542 184259907 + unitary_pseudogene processed_transcript MGP_CASTEiJ_T0101872.1 MGP_CASTEiJ_G0026198.1 mouse_genomes_project 2 184256704 184259521 + unitary_pseudogene unitary_pseudogene MGP_CASTEiJ_T0052573.1 MGP_CASTEiJ_G0024569.1 mouse_genomes_project 2 15458089 15461989 - Skida1 protein_coding processed_transcript MGP_CASTEiJ_T0052574.1 MGP_CASTEiJ_G0024569.1 mouse_genomes_project 2 15461499 15466457 - MGP_CASTEiJ_P0052574 Skida1 protein_coding protein_coding MGP_CASTEiJ_T0052575.1 MGP_CASTEiJ_G0024569.1 mouse_genomes_project 2 15462666 15465843 - MGP_CASTEiJ_P0052575 Skida1 protein_coding protein_coding MGP_CASTEiJ_T0052576.1 MGP_CASTEiJ_G0024569.1 mouse_genomes_project 2 15465109 15466190 - MGP_CASTEiJ_P0052576 Skida1 protein_coding protein_coding MGP_CASTEiJ_T0052577.1 MGP_CASTEiJ_G0024569.1 mouse_genomes_project 2 15465537 15466437 - MGP_CASTEiJ_P0052577 Skida1 protein_coding protein_coding MGP_CASTEiJ_T0059057.1 MGP_CASTEiJ_G0026027.1 mouse_genomes_project 2 168547722 168559325 + Rbpjl protein_coding retained_intron MGP_CASTEiJ_T0059058.1 MGP_CASTEiJ_G0026027.1 mouse_genomes_project 2 168547775 168559982 + MGP_CASTEiJ_P0059058 Rbpjl protein_coding protein_coding MGP_CASTEiJ_T0059059.1 MGP_CASTEiJ_G0026027.1 mouse_genomes_project 2 168547790 168555979 + Rbpjl protein_coding processed_transcript MGP_CASTEiJ_T0011185.1 MGP_CASTEiJ_G0009373.1 mouse_genomes_project 2 145383416 145383720 + Gm23179 misc_RNA misc_RNA MGP_CASTEiJ_T0058647.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159792976 159829842 - MGP_CASTEiJ_P0058647 Rbm39 protein_coding protein_coding MGP_CASTEiJ_T0058648.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159792983 159829184 - MGP_CASTEiJ_P0058648 Rbm39 protein_coding protein_coding MGP_CASTEiJ_T0058649.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159792986 159829753 - MGP_CASTEiJ_P0058649 Rbm39 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058650.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159792986 159829771 - MGP_CASTEiJ_P0058650 Rbm39 protein_coding protein_coding MGP_CASTEiJ_T0058651.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159793678 159829780 - MGP_CASTEiJ_P0058651 Rbm39 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058652.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159793678 159829788 - MGP_CASTEiJ_P0058652 Rbm39 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058653.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159795001 159813013 - MGP_CASTEiJ_P0058653 Rbm39 protein_coding protein_coding MGP_CASTEiJ_T0058654.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159809080 159829746 - MGP_CASTEiJ_P0058654 Rbm39 protein_coding protein_coding MGP_CASTEiJ_T0058655.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159809082 159813302 - Rbm39 protein_coding retained_intron MGP_CASTEiJ_T0058656.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159810061 159818163 - Rbm39 protein_coding processed_transcript MGP_CASTEiJ_T0058657.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159812074 159817077 - Rbm39 protein_coding retained_intron MGP_CASTEiJ_T0058658.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159812895 159829763 - MGP_CASTEiJ_P0058658 Rbm39 protein_coding protein_coding MGP_CASTEiJ_T0058659.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159813009 159822555 - Rbm39 protein_coding processed_transcript MGP_CASTEiJ_T0058660.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159816466 159827336 - Rbm39 protein_coding retained_intron MGP_CASTEiJ_T0058661.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159818757 159826985 - Rbm39 protein_coding processed_transcript MGP_CASTEiJ_T0058662.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159822426 159829765 - MGP_CASTEiJ_P0058662 Rbm39 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058663.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159822525 159829751 - MGP_CASTEiJ_P0058663 Rbm39 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058664.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159822547 159827506 - Rbm39 protein_coding retained_intron MGP_CASTEiJ_T0058665.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159824284 159829516 - MGP_CASTEiJ_P0058665 Rbm39 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058666.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159824288 159829760 - MGP_CASTEiJ_P0058666 Rbm39 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058667.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159824373 159829842 - MGP_CASTEiJ_P0058667 Rbm39 protein_coding protein_coding MGP_CASTEiJ_T0058668.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159826762 159829800 - Rbm39 protein_coding retained_intron MGP_CASTEiJ_T0058669.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159826962 159829753 - MGP_CASTEiJ_P0058669 Rbm39 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058670.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159828162 159829816 - Rbm39 protein_coding retained_intron MGP_CASTEiJ_T0058671.1 MGP_CASTEiJ_G0025939.1 mouse_genomes_project 2 159828164 159829749 - Rbm39 protein_coding retained_intron MGP_CASTEiJ_T0004056.1 MGP_CASTEiJ_G0003591.1 mouse_genomes_project 2 178260879 178262627 + Pmepa1os antisense antisense MGP_CASTEiJ_T0058189.1 MGP_CASTEiJ_G0025825.1 mouse_genomes_project 2 155120449 155152275 + MGP_CASTEiJ_P0058189 protein_coding protein_coding MGP_CASTEiJ_T0055660.1 MGP_CASTEiJ_G0025162.1 mouse_genomes_project 2 86896557 86897499 - MGP_CASTEiJ_P0055660 protein_coding protein_coding MGP_CASTEiJ_T0056951.1 MGP_CASTEiJ_G0025551.1 mouse_genomes_project 2 122477951 122516408 + MGP_CASTEiJ_P0056951 Snap23 protein_coding protein_coding MGP_CASTEiJ_T0056952.1 MGP_CASTEiJ_G0025551.1 mouse_genomes_project 2 122477971 122516408 + MGP_CASTEiJ_P0056952 Snap23 protein_coding protein_coding MGP_CASTEiJ_T0056953.1 MGP_CASTEiJ_G0025551.1 mouse_genomes_project 2 122477977 122516408 + MGP_CASTEiJ_P0056953 Snap23 protein_coding protein_coding MGP_CASTEiJ_T0056954.1 MGP_CASTEiJ_G0025551.1 mouse_genomes_project 2 122478001 122511914 + MGP_CASTEiJ_P0056954 Snap23 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056955.1 MGP_CASTEiJ_G0025551.1 mouse_genomes_project 2 122478003 122496310 + Snap23 protein_coding retained_intron MGP_CASTEiJ_T0056956.1 MGP_CASTEiJ_G0025551.1 mouse_genomes_project 2 122478003 122497631 + MGP_CASTEiJ_P0056956 Snap23 protein_coding protein_coding MGP_CASTEiJ_T0056957.1 MGP_CASTEiJ_G0025551.1 mouse_genomes_project 2 122478018 122511827 + MGP_CASTEiJ_P0056957 Snap23 protein_coding protein_coding MGP_CASTEiJ_T0056958.1 MGP_CASTEiJ_G0025551.1 mouse_genomes_project 2 122497604 122507136 + Snap23 protein_coding retained_intron MGP_CASTEiJ_T0056959.1 MGP_CASTEiJ_G0025551.1 mouse_genomes_project 2 122502241 122511909 + Snap23 protein_coding processed_transcript MGP_CASTEiJ_T0013211.1 MGP_CASTEiJ_G0011374.1 mouse_genomes_project 2 82747420 82747949 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098570.1 MGP_CASTEiJ_G0035501.1 mouse_genomes_project 2 74797465 74797565 - n-R5s198 rRNA rRNA MGP_CASTEiJ_T0001053.1 MGP_CASTEiJ_G0000988.1 mouse_genomes_project 2 152156548 152156913 - TEC TEC MGP_CASTEiJ_T0058288.1 MGP_CASTEiJ_G0025863.1 mouse_genomes_project 2 156365128 156371699 - MGP_CASTEiJ_P0058288 Pdrg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058289.1 MGP_CASTEiJ_G0025863.1 mouse_genomes_project 2 156365128 156371699 - MGP_CASTEiJ_P0058289 Pdrg1 protein_coding protein_coding MGP_CASTEiJ_T0058290.1 MGP_CASTEiJ_G0025863.1 mouse_genomes_project 2 156365709 156368751 - Pdrg1 protein_coding retained_intron MGP_CASTEiJ_T0058291.1 MGP_CASTEiJ_G0025863.1 mouse_genomes_project 2 156366534 156371638 - MGP_CASTEiJ_P0058291 Pdrg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058292.1 MGP_CASTEiJ_G0025863.1 mouse_genomes_project 2 156368473 156371618 - Pdrg1 protein_coding retained_intron MGP_CASTEiJ_T0058293.1 MGP_CASTEiJ_G0025863.1 mouse_genomes_project 2 156368643 156371634 - MGP_CASTEiJ_P0058293 Pdrg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058294.1 MGP_CASTEiJ_G0025863.1 mouse_genomes_project 2 156369611 156371649 - Pdrg1 protein_coding retained_intron MGP_CASTEiJ_T0058295.1 MGP_CASTEiJ_G0025863.1 mouse_genomes_project 2 156370275 156371614 - Pdrg1 protein_coding processed_transcript MGP_CASTEiJ_T0059874.1 MGP_CASTEiJ_G0026206.1 mouse_genomes_project 2 184481178 184485173 - MGP_CASTEiJ_P0059874 Samd10 protein_coding protein_coding MGP_CASTEiJ_T0059875.1 MGP_CASTEiJ_G0026206.1 mouse_genomes_project 2 184481181 184485159 - MGP_CASTEiJ_P0059875 Samd10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059876.1 MGP_CASTEiJ_G0026206.1 mouse_genomes_project 2 184482755 184483570 - Samd10 protein_coding retained_intron MGP_CASTEiJ_T0001022.1 MGP_CASTEiJ_G0000958.1 mouse_genomes_project 2 34018703 34021716 - TEC TEC MGP_CASTEiJ_T0007241.1 MGP_CASTEiJ_G0005953.1 mouse_genomes_project 2 176831085 176832086 - Gm14272 lincRNA lincRNA MGP_CASTEiJ_T0057673.1 MGP_CASTEiJ_G0025705.1 mouse_genomes_project 2 133671944 133676849 - MGP_CASTEiJ_P0057673 Cenpb protein_coding protein_coding MGP_CASTEiJ_T0001034.1 MGP_CASTEiJ_G0000970.1 mouse_genomes_project 2 38023799 38027404 + TEC TEC MGP_CASTEiJ_T0013399.1 MGP_CASTEiJ_G0011562.1 mouse_genomes_project 2 155764023 155764331 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013287.1 MGP_CASTEiJ_G0011450.1 mouse_genomes_project 2 107612092 107612362 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059763.1 MGP_CASTEiJ_G0026191.1 mouse_genomes_project 2 184087167 184101529 - MGP_CASTEiJ_P0059763 Helz2 protein_coding protein_coding MGP_CASTEiJ_T0059764.1 MGP_CASTEiJ_G0026191.1 mouse_genomes_project 2 184087168 184101527 - MGP_CASTEiJ_P0059764 Helz2 protein_coding protein_coding MGP_CASTEiJ_T0059765.1 MGP_CASTEiJ_G0026191.1 mouse_genomes_project 2 184087171 184101465 - MGP_CASTEiJ_P0059765 Helz2 protein_coding protein_coding MGP_CASTEiJ_T0059766.1 MGP_CASTEiJ_G0026191.1 mouse_genomes_project 2 184087174 184095262 - Helz2 protein_coding retained_intron MGP_CASTEiJ_T0059767.1 MGP_CASTEiJ_G0026191.1 mouse_genomes_project 2 184096664 184101527 - Helz2 protein_coding retained_intron MGP_CASTEiJ_T0055298.1 MGP_CASTEiJ_G0025052.1 mouse_genomes_project 2 75541940 75545666 + MGP_CASTEiJ_P0055298 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055299.1 MGP_CASTEiJ_G0025052.1 mouse_genomes_project 2 75541994 75556068 + MGP_CASTEiJ_P0055299 protein_coding protein_coding MGP_CASTEiJ_T0055300.1 MGP_CASTEiJ_G0025052.1 mouse_genomes_project 2 75542045 75549755 + MGP_CASTEiJ_P0055300 protein_coding protein_coding MGP_CASTEiJ_T0055301.1 MGP_CASTEiJ_G0025052.1 mouse_genomes_project 2 75544934 75550453 + MGP_CASTEiJ_P0055301 protein_coding protein_coding MGP_CASTEiJ_T0054355.1 MGP_CASTEiJ_G0024867.1 mouse_genomes_project 2 34871618 34872548 + MGP_CASTEiJ_P0054355 Olfr346 protein_coding protein_coding MGP_CASTEiJ_T0013160.1 MGP_CASTEiJ_G0011323.1 mouse_genomes_project 2 60275378 60275669 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007025.1 MGP_CASTEiJ_G0005776.1 mouse_genomes_project 2 59994826 60007062 - Gm13582 lincRNA lincRNA MGP_CASTEiJ_T0059193.1 MGP_CASTEiJ_G0026063.1 mouse_genomes_project 2 169273530 169286658 - MGP_CASTEiJ_P0059193 1700025C18Rik protein_coding protein_coding MGP_CASTEiJ_T0007053.1 MGP_CASTEiJ_G0005799.1 mouse_genomes_project 2 74597476 74598112 + Gm14426 lincRNA lincRNA MGP_CASTEiJ_T0056819.1 MGP_CASTEiJ_G0025532.1 mouse_genomes_project 2 121615859 121624767 + MGP_CASTEiJ_P0056819 Itpka protein_coding protein_coding MGP_CASTEiJ_T0058383.1 MGP_CASTEiJ_G0025888.1 mouse_genomes_project 2 157707395 157744702 + MGP_CASTEiJ_P0058383 Bpifb1 protein_coding protein_coding MGP_CASTEiJ_T0058384.1 MGP_CASTEiJ_G0025888.1 mouse_genomes_project 2 157707400 157744675 + Bpifb1 protein_coding retained_intron MGP_CASTEiJ_T0058385.1 MGP_CASTEiJ_G0025888.1 mouse_genomes_project 2 157723282 157744676 + MGP_CASTEiJ_P0058385 Bpifb1 protein_coding protein_coding MGP_CASTEiJ_T0007221.1 MGP_CASTEiJ_G0005936.1 mouse_genomes_project 2 172608489 172610400 - E130018N17Rik lincRNA lincRNA MGP_CASTEiJ_T0059304.1 MGP_CASTEiJ_G0026081.1 mouse_genomes_project 2 171298727 171352645 - MGP_CASTEiJ_P0059304 Stau1 protein_coding protein_coding MGP_CASTEiJ_T0059305.1 MGP_CASTEiJ_G0026081.1 mouse_genomes_project 2 171299325 171306553 - Stau1 protein_coding retained_intron MGP_CASTEiJ_T0059306.1 MGP_CASTEiJ_G0026081.1 mouse_genomes_project 2 171299325 171352632 - MGP_CASTEiJ_P0059306 Stau1 protein_coding protein_coding MGP_CASTEiJ_T0059307.1 MGP_CASTEiJ_G0026081.1 mouse_genomes_project 2 171299325 171352470 - MGP_CASTEiJ_P0059307 Stau1 protein_coding protein_coding MGP_CASTEiJ_T0059308.1 MGP_CASTEiJ_G0026081.1 mouse_genomes_project 2 171299451 171352666 - MGP_CASTEiJ_P0059308 Stau1 protein_coding protein_coding MGP_CASTEiJ_T0059309.1 MGP_CASTEiJ_G0026081.1 mouse_genomes_project 2 171300423 171302402 - Stau1 protein_coding retained_intron MGP_CASTEiJ_T0059310.1 MGP_CASTEiJ_G0026081.1 mouse_genomes_project 2 171300469 171315810 - MGP_CASTEiJ_P0059310 Stau1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059311.1 MGP_CASTEiJ_G0026081.1 mouse_genomes_project 2 171300871 171302127 - Stau1 protein_coding retained_intron MGP_CASTEiJ_T0059312.1 MGP_CASTEiJ_G0026081.1 mouse_genomes_project 2 171303474 171311492 - Stau1 protein_coding retained_intron MGP_CASTEiJ_T0059313.1 MGP_CASTEiJ_G0026081.1 mouse_genomes_project 2 171304077 171314535 - Stau1 protein_coding retained_intron MGP_CASTEiJ_T0059314.1 MGP_CASTEiJ_G0026081.1 mouse_genomes_project 2 171314600 171331069 - Stau1 protein_coding processed_transcript MGP_CASTEiJ_T0052749.1 MGP_CASTEiJ_G0024601.1 mouse_genomes_project 2 21627897 21638535 - MGP_CASTEiJ_P0052749 Il1f6 protein_coding protein_coding MGP_CASTEiJ_T0052750.1 MGP_CASTEiJ_G0024601.1 mouse_genomes_project 2 21628074 21638448 - Il1f6 protein_coding processed_transcript MGP_CASTEiJ_T0010061.1 MGP_CASTEiJ_G0008249.1 mouse_genomes_project 2 7722130 7722228 + Mir669l miRNA miRNA MGP_CASTEiJ_T0052635.1 MGP_CASTEiJ_G0024580.1 mouse_genomes_project 2 16930949 17028671 - MGP_CASTEiJ_P0052635 4921504E06Rik protein_coding protein_coding MGP_CASTEiJ_T0052636.1 MGP_CASTEiJ_G0024580.1 mouse_genomes_project 2 16964891 17028671 - 4921504E06Rik protein_coding retained_intron MGP_CASTEiJ_T0056053.1 MGP_CASTEiJ_G0025342.1 mouse_genomes_project 2 92636996 92638494 + MGP_CASTEiJ_P0056053 Harbi1 protein_coding protein_coding MGP_CASTEiJ_T0056054.1 MGP_CASTEiJ_G0025342.1 mouse_genomes_project 2 92636997 92638892 + MGP_CASTEiJ_P0056054 Harbi1 protein_coding protein_coding MGP_CASTEiJ_T0056055.1 MGP_CASTEiJ_G0025342.1 mouse_genomes_project 2 92637061 92641575 + MGP_CASTEiJ_P0056055 Harbi1 protein_coding protein_coding MGP_CASTEiJ_T0056056.1 MGP_CASTEiJ_G0025342.1 mouse_genomes_project 2 92637066 92648374 + MGP_CASTEiJ_P0056056 Harbi1 protein_coding protein_coding MGP_CASTEiJ_T0056057.1 MGP_CASTEiJ_G0025342.1 mouse_genomes_project 2 92638361 92646132 + MGP_CASTEiJ_P0056057 Harbi1 protein_coding protein_coding MGP_CASTEiJ_T0055502.1 MGP_CASTEiJ_G0025090.1 mouse_genomes_project 2 84684750 84731208 - MGP_CASTEiJ_P0055502 Tfpi protein_coding protein_coding MGP_CASTEiJ_T0055503.1 MGP_CASTEiJ_G0025090.1 mouse_genomes_project 2 84684750 84729717 - MGP_CASTEiJ_P0055503 Tfpi protein_coding protein_coding MGP_CASTEiJ_T0055504.1 MGP_CASTEiJ_G0025090.1 mouse_genomes_project 2 84684755 84686514 - Tfpi protein_coding processed_transcript MGP_CASTEiJ_T0055505.1 MGP_CASTEiJ_G0025090.1 mouse_genomes_project 2 84684755 84730107 - MGP_CASTEiJ_P0055505 Tfpi protein_coding protein_coding MGP_CASTEiJ_T0055506.1 MGP_CASTEiJ_G0025090.1 mouse_genomes_project 2 84692060 84732803 - MGP_CASTEiJ_P0055506 Tfpi protein_coding protein_coding MGP_CASTEiJ_T0055507.1 MGP_CASTEiJ_G0025090.1 mouse_genomes_project 2 84692060 84732815 - MGP_CASTEiJ_P0055507 Tfpi protein_coding protein_coding MGP_CASTEiJ_T0055508.1 MGP_CASTEiJ_G0025090.1 mouse_genomes_project 2 84692060 84732788 - MGP_CASTEiJ_P0055508 Tfpi protein_coding protein_coding MGP_CASTEiJ_T0055509.1 MGP_CASTEiJ_G0025090.1 mouse_genomes_project 2 84692060 84712151 - MGP_CASTEiJ_P0055509 Tfpi protein_coding protein_coding MGP_CASTEiJ_T0055510.1 MGP_CASTEiJ_G0025090.1 mouse_genomes_project 2 84692644 84729736 - MGP_CASTEiJ_P0055510 Tfpi protein_coding protein_coding MGP_CASTEiJ_T0055511.1 MGP_CASTEiJ_G0025090.1 mouse_genomes_project 2 84695990 84729732 - Tfpi protein_coding processed_transcript MGP_CASTEiJ_T0102199.1 MGP_CASTEiJ_G0038924.1 mouse_genomes_project 2 18573780 18676577 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0056883.1 MGP_CASTEiJ_G0025542.1 mouse_genomes_project 2 121977943 122047530 - MGP_CASTEiJ_P0056883 Ehd4 protein_coding protein_coding MGP_CASTEiJ_T0056884.1 MGP_CASTEiJ_G0025542.1 mouse_genomes_project 2 121992902 122021157 - Ehd4 protein_coding processed_transcript MGP_CASTEiJ_T0056885.1 MGP_CASTEiJ_G0025542.1 mouse_genomes_project 2 121993087 122028989 - Ehd4 protein_coding processed_transcript MGP_CASTEiJ_T0056886.1 MGP_CASTEiJ_G0025542.1 mouse_genomes_project 2 122013854 122047386 - Ehd4 protein_coding processed_transcript MGP_CASTEiJ_T0001021.1 MGP_CASTEiJ_G0000957.1 mouse_genomes_project 2 33671958 33672949 - TEC TEC MGP_CASTEiJ_T0057693.1 MGP_CASTEiJ_G0025709.1 mouse_genomes_project 2 133761513 133783480 + Pank2 protein_coding processed_transcript MGP_CASTEiJ_T0057694.1 MGP_CASTEiJ_G0025709.1 mouse_genomes_project 2 133761518 133799034 + MGP_CASTEiJ_P0057694 Pank2 protein_coding protein_coding MGP_CASTEiJ_T0057695.1 MGP_CASTEiJ_G0025709.1 mouse_genomes_project 2 133761543 133796338 + MGP_CASTEiJ_P0057695 Pank2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057696.1 MGP_CASTEiJ_G0025709.1 mouse_genomes_project 2 133761586 133799032 + MGP_CASTEiJ_P0057696 Pank2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057697.1 MGP_CASTEiJ_G0025709.1 mouse_genomes_project 2 133761814 133796176 + MGP_CASTEiJ_P0057697 Pank2 protein_coding protein_coding MGP_CASTEiJ_T0057698.1 MGP_CASTEiJ_G0025709.1 mouse_genomes_project 2 133761857 133796541 + Pank2 protein_coding processed_transcript MGP_CASTEiJ_T0057699.1 MGP_CASTEiJ_G0025709.1 mouse_genomes_project 2 133774136 133793313 + MGP_CASTEiJ_P0057699 Pank2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057700.1 MGP_CASTEiJ_G0025709.1 mouse_genomes_project 2 133774244 133796153 + MGP_CASTEiJ_P0057700 Pank2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013132.1 MGP_CASTEiJ_G0011295.1 mouse_genomes_project 2 50784393 50784930 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056682.1 MGP_CASTEiJ_G0025497.1 mouse_genomes_project 2 120272547 120275660 - MGP_CASTEiJ_P0056682 Srp14 protein_coding protein_coding MGP_CASTEiJ_T0056683.1 MGP_CASTEiJ_G0025497.1 mouse_genomes_project 2 120272548 120274795 - Srp14 protein_coding processed_transcript MGP_CASTEiJ_T0056684.1 MGP_CASTEiJ_G0025497.1 mouse_genomes_project 2 120272558 120275597 - Srp14 protein_coding processed_transcript MGP_CASTEiJ_T0056685.1 MGP_CASTEiJ_G0025497.1 mouse_genomes_project 2 120274476 120275584 - MGP_CASTEiJ_P0056685 Srp14 protein_coding protein_coding MGP_CASTEiJ_T0055840.1 MGP_CASTEiJ_G0025308.1 mouse_genomes_project 2 90885430 90886339 - MGP_CASTEiJ_P0055840 Olfr140 protein_coding protein_coding MGP_CASTEiJ_T0055841.1 MGP_CASTEiJ_G0025308.1 mouse_genomes_project 2 90885430 90889085 - MGP_CASTEiJ_P0055841 Olfr140 protein_coding protein_coding MGP_CASTEiJ_T0059564.1 MGP_CASTEiJ_G0026147.1 mouse_genomes_project 2 179528652 179538261 - MGP_CASTEiJ_P0059564 Slmo2 protein_coding protein_coding MGP_CASTEiJ_T0059565.1 MGP_CASTEiJ_G0026147.1 mouse_genomes_project 2 179529198 179538078 - MGP_CASTEiJ_P0059565 Slmo2 protein_coding protein_coding MGP_CASTEiJ_T0059566.1 MGP_CASTEiJ_G0026147.1 mouse_genomes_project 2 179529307 179538114 - MGP_CASTEiJ_P0059566 Slmo2 protein_coding protein_coding MGP_CASTEiJ_T0059567.1 MGP_CASTEiJ_G0026147.1 mouse_genomes_project 2 179534357 179538071 - Slmo2 protein_coding retained_intron MGP_CASTEiJ_T0059568.1 MGP_CASTEiJ_G0026147.1 mouse_genomes_project 2 179534566 179538111 - MGP_CASTEiJ_P0059568 Slmo2 protein_coding protein_coding MGP_CASTEiJ_T0010186.1 MGP_CASTEiJ_G0008374.1 mouse_genomes_project 2 158931155 158931264 + Mir695 miRNA miRNA MGP_CASTEiJ_T0058297.1 MGP_CASTEiJ_G0025865.1 mouse_genomes_project 2 156423045 156439348 + Ccm2l protein_coding processed_transcript MGP_CASTEiJ_T0058298.1 MGP_CASTEiJ_G0025865.1 mouse_genomes_project 2 156423074 156428296 + Ccm2l protein_coding processed_transcript MGP_CASTEiJ_T0058299.1 MGP_CASTEiJ_G0025865.1 mouse_genomes_project 2 156423088 156428103 + MGP_CASTEiJ_P0058299 Ccm2l protein_coding protein_coding MGP_CASTEiJ_T0058300.1 MGP_CASTEiJ_G0025865.1 mouse_genomes_project 2 156423092 156439348 + MGP_CASTEiJ_P0058300 Ccm2l protein_coding protein_coding MGP_CASTEiJ_T0058301.1 MGP_CASTEiJ_G0025865.1 mouse_genomes_project 2 156423097 156439348 + MGP_CASTEiJ_P0058301 Ccm2l protein_coding unknown_likely_coding MGP_CASTEiJ_T0013349.1 MGP_CASTEiJ_G0011512.1 mouse_genomes_project 2 135268863 135269318 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057632.1 MGP_CASTEiJ_G0025697.1 mouse_genomes_project 2 133381642 133513019 + MGP_CASTEiJ_P0057632 Atrn protein_coding protein_coding MGP_CASTEiJ_T0057633.1 MGP_CASTEiJ_G0025697.1 mouse_genomes_project 2 133381648 133486734 + Atrn protein_coding retained_intron MGP_CASTEiJ_T0057634.1 MGP_CASTEiJ_G0025697.1 mouse_genomes_project 2 133382078 133413535 + Atrn protein_coding retained_intron MGP_CASTEiJ_T0057635.1 MGP_CASTEiJ_G0025697.1 mouse_genomes_project 2 133462614 133475385 + Atrn protein_coding retained_intron MGP_CASTEiJ_T0057636.1 MGP_CASTEiJ_G0025697.1 mouse_genomes_project 2 133477038 133486762 + Atrn protein_coding retained_intron MGP_CASTEiJ_T0017107.1 MGP_CASTEiJ_G0014778.1 mouse_genomes_project 2 124789996 124806017 + 4930417H01Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017108.1 MGP_CASTEiJ_G0014778.1 mouse_genomes_project 2 124790850 124808486 + 4930417H01Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017109.1 MGP_CASTEiJ_G0014778.1 mouse_genomes_project 2 124790852 124806017 + 4930417H01Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017110.1 MGP_CASTEiJ_G0014778.1 mouse_genomes_project 2 124792187 124808487 + 4930417H01Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017111.1 MGP_CASTEiJ_G0014778.1 mouse_genomes_project 2 124792189 124806128 + 4930417H01Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017112.1 MGP_CASTEiJ_G0014778.1 mouse_genomes_project 2 124795991 124809351 + 4930417H01Rik processed_transcript processed_transcript MGP_CASTEiJ_T0013002.1 MGP_CASTEiJ_G0011165.1 mouse_genomes_project 2 348956 349272 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099648.1 MGP_CASTEiJ_G0036561.1 mouse_genomes_project 2 104052118 104052225 + Gm23731 snRNA snRNA MGP_CASTEiJ_T0016983.1 MGP_CASTEiJ_G0014707.1 mouse_genomes_project 2 10570735 10623834 + Gm13270 processed_transcript antisense MGP_CASTEiJ_T0016984.1 MGP_CASTEiJ_G0014707.1 mouse_genomes_project 2 10570736 10573400 + Gm13270 processed_transcript retained_intron MGP_CASTEiJ_T0006936.1 MGP_CASTEiJ_G0005707.1 mouse_genomes_project 2 841587 859590 + Gm13180 lincRNA lincRNA MGP_CASTEiJ_T0055726.1 MGP_CASTEiJ_G0025217.1 mouse_genomes_project 2 88404755 88405682 + MGP_CASTEiJ_P0055726 Olfr1151 protein_coding protein_coding MGP_CASTEiJ_T0013324.1 MGP_CASTEiJ_G0011487.1 mouse_genomes_project 2 123734275 123734937 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013246.1 MGP_CASTEiJ_G0011409.1 mouse_genomes_project 2 92559953 92560191 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013413.1 MGP_CASTEiJ_G0011576.1 mouse_genomes_project 2 159699329 159699872 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013021.1 MGP_CASTEiJ_G0011184.1 mouse_genomes_project 2 8151584 8152005 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006974.1 MGP_CASTEiJ_G0005736.1 mouse_genomes_project 2 23737184 23740882 - C330006A16Rik lincRNA lincRNA MGP_CASTEiJ_T0006975.1 MGP_CASTEiJ_G0005736.1 mouse_genomes_project 2 23738741 23739161 - C330006A16Rik lincRNA lincRNA MGP_CASTEiJ_T0054788.1 MGP_CASTEiJ_G0024955.1 mouse_genomes_project 2 59207663 59248319 + MGP_CASTEiJ_P0054788 March7 protein_coding protein_coding MGP_CASTEiJ_T0054789.1 MGP_CASTEiJ_G0024955.1 mouse_genomes_project 2 59207689 59249784 + March7 protein_coding processed_transcript MGP_CASTEiJ_T0054790.1 MGP_CASTEiJ_G0024955.1 mouse_genomes_project 2 59207849 59247081 + MGP_CASTEiJ_P0054790 March7 protein_coding protein_coding MGP_CASTEiJ_T0054791.1 MGP_CASTEiJ_G0024955.1 mouse_genomes_project 2 59222550 59247065 + MGP_CASTEiJ_P0054791 March7 protein_coding protein_coding MGP_CASTEiJ_T0054792.1 MGP_CASTEiJ_G0024955.1 mouse_genomes_project 2 59231164 59233470 + March7 protein_coding processed_transcript MGP_CASTEiJ_T0054793.1 MGP_CASTEiJ_G0024955.1 mouse_genomes_project 2 59235828 59247065 + MGP_CASTEiJ_P0054793 March7 protein_coding protein_coding MGP_CASTEiJ_T0054794.1 MGP_CASTEiJ_G0024955.1 mouse_genomes_project 2 59235962 59242228 + March7 protein_coding processed_transcript MGP_CASTEiJ_T0054795.1 MGP_CASTEiJ_G0024955.1 mouse_genomes_project 2 59242162 59247063 + March7 protein_coding processed_transcript MGP_CASTEiJ_T0054796.1 MGP_CASTEiJ_G0024955.1 mouse_genomes_project 2 59246450 59247065 + March7 protein_coding processed_transcript MGP_CASTEiJ_T0054702.1 MGP_CASTEiJ_G0024944.1 mouse_genomes_project 2 57071096 57111516 - MGP_CASTEiJ_P0054702 Cytip protein_coding protein_coding MGP_CASTEiJ_T0054703.1 MGP_CASTEiJ_G0024944.1 mouse_genomes_project 2 57076578 57147446 - Cytip protein_coding processed_transcript MGP_CASTEiJ_T0054704.1 MGP_CASTEiJ_G0024944.1 mouse_genomes_project 2 57076663 57147456 - Cytip protein_coding processed_transcript MGP_CASTEiJ_T0054705.1 MGP_CASTEiJ_G0024944.1 mouse_genomes_project 2 57076795 57104780 - Cytip protein_coding processed_transcript MGP_CASTEiJ_T0054706.1 MGP_CASTEiJ_G0024944.1 mouse_genomes_project 2 57093141 57111149 - Cytip protein_coding processed_transcript MGP_CASTEiJ_T0054707.1 MGP_CASTEiJ_G0024944.1 mouse_genomes_project 2 57093316 57147457 - Cytip protein_coding processed_transcript MGP_CASTEiJ_T0054708.1 MGP_CASTEiJ_G0024944.1 mouse_genomes_project 2 57111005 57147461 - Cytip protein_coding processed_transcript MGP_CASTEiJ_T0054709.1 MGP_CASTEiJ_G0024944.1 mouse_genomes_project 2 57111066 57111678 - Cytip protein_coding processed_transcript MGP_CASTEiJ_T0055295.1 MGP_CASTEiJ_G0025051.1 mouse_genomes_project 2 74679619 74739325 + MGP_CASTEiJ_P0055295 Mtx2 protein_coding protein_coding MGP_CASTEiJ_T0055296.1 MGP_CASTEiJ_G0025051.1 mouse_genomes_project 2 74679646 74728943 + Mtx2 protein_coding retained_intron MGP_CASTEiJ_T0055297.1 MGP_CASTEiJ_G0025051.1 mouse_genomes_project 2 74729109 74737398 + Mtx2 protein_coding retained_intron MGP_CASTEiJ_T0056259.1 MGP_CASTEiJ_G0025378.1 mouse_genomes_project 2 102799751 102888422 - MGP_CASTEiJ_P0056259 Prr5l protein_coding protein_coding MGP_CASTEiJ_T0056260.1 MGP_CASTEiJ_G0025378.1 mouse_genomes_project 2 102799751 102932267 - MGP_CASTEiJ_P0056260 Prr5l protein_coding protein_coding MGP_CASTEiJ_T0056261.1 MGP_CASTEiJ_G0025378.1 mouse_genomes_project 2 102801693 102888423 - MGP_CASTEiJ_P0056261 Prr5l protein_coding protein_coding MGP_CASTEiJ_T0056262.1 MGP_CASTEiJ_G0025378.1 mouse_genomes_project 2 102827778 102932267 - MGP_CASTEiJ_P0056262 Prr5l protein_coding protein_coding MGP_CASTEiJ_T0056263.1 MGP_CASTEiJ_G0025378.1 mouse_genomes_project 2 102848519 102981822 - MGP_CASTEiJ_P0056263 Prr5l protein_coding protein_coding MGP_CASTEiJ_T0056264.1 MGP_CASTEiJ_G0025378.1 mouse_genomes_project 2 102862719 102888769 - MGP_CASTEiJ_P0056264 Prr5l protein_coding protein_coding MGP_CASTEiJ_T0056265.1 MGP_CASTEiJ_G0025378.1 mouse_genomes_project 2 102862763 102905871 - MGP_CASTEiJ_P0056265 Prr5l protein_coding protein_coding MGP_CASTEiJ_T0056266.1 MGP_CASTEiJ_G0025378.1 mouse_genomes_project 2 102862874 102888448 - Prr5l protein_coding processed_transcript MGP_CASTEiJ_T0056267.1 MGP_CASTEiJ_G0025378.1 mouse_genomes_project 2 102923443 102981835 - Prr5l protein_coding processed_transcript MGP_CASTEiJ_T0007085.1 MGP_CASTEiJ_G0005825.1 mouse_genomes_project 2 96917510 96920039 + Gm13799 lincRNA lincRNA MGP_CASTEiJ_T0013207.1 MGP_CASTEiJ_G0011370.1 mouse_genomes_project 2 80779645 80780253 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053981.1 MGP_CASTEiJ_G0024802.1 mouse_genomes_project 2 30425647 30437480 + MGP_CASTEiJ_P0053981 Ptges2 protein_coding protein_coding MGP_CASTEiJ_T0053982.1 MGP_CASTEiJ_G0024802.1 mouse_genomes_project 2 30426191 30432747 + MGP_CASTEiJ_P0053982 Ptges2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053983.1 MGP_CASTEiJ_G0024802.1 mouse_genomes_project 2 30427219 30433300 + Ptges2 protein_coding retained_intron MGP_CASTEiJ_T0100903.1 MGP_CASTEiJ_G0037816.1 mouse_genomes_project 2 131134248 131134372 + Gm23172 snoRNA snoRNA MGP_CASTEiJ_T0057591.1 MGP_CASTEiJ_G0025688.1 mouse_genomes_project 2 133012219 133013126 + MGP_CASTEiJ_P0057591 Oxt protein_coding protein_coding MGP_CASTEiJ_T0059292.1 MGP_CASTEiJ_G0026080.1 mouse_genomes_project 2 171256554 171295711 + Cse1l protein_coding processed_transcript MGP_CASTEiJ_T0059293.1 MGP_CASTEiJ_G0026080.1 mouse_genomes_project 2 171256573 171297544 + MGP_CASTEiJ_P0059293 Cse1l protein_coding protein_coding MGP_CASTEiJ_T0059294.1 MGP_CASTEiJ_G0026080.1 mouse_genomes_project 2 171256625 171297257 + MGP_CASTEiJ_P0059294 Cse1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059295.1 MGP_CASTEiJ_G0026080.1 mouse_genomes_project 2 171265447 171296949 + MGP_CASTEiJ_P0059295 Cse1l protein_coding protein_coding MGP_CASTEiJ_T0059296.1 MGP_CASTEiJ_G0026080.1 mouse_genomes_project 2 171277735 171296964 + MGP_CASTEiJ_P0059296 Cse1l protein_coding protein_coding MGP_CASTEiJ_T0059297.1 MGP_CASTEiJ_G0026080.1 mouse_genomes_project 2 171277770 171282605 + Cse1l protein_coding retained_intron MGP_CASTEiJ_T0059298.1 MGP_CASTEiJ_G0026080.1 mouse_genomes_project 2 171277929 171285918 + Cse1l protein_coding retained_intron MGP_CASTEiJ_T0059299.1 MGP_CASTEiJ_G0026080.1 mouse_genomes_project 2 171277973 171288260 + Cse1l protein_coding processed_transcript MGP_CASTEiJ_T0059300.1 MGP_CASTEiJ_G0026080.1 mouse_genomes_project 2 171285585 171296014 + Cse1l protein_coding retained_intron MGP_CASTEiJ_T0059301.1 MGP_CASTEiJ_G0026080.1 mouse_genomes_project 2 171285612 171292279 + MGP_CASTEiJ_P0059301 Cse1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059302.1 MGP_CASTEiJ_G0026080.1 mouse_genomes_project 2 171287931 171292075 + Cse1l protein_coding retained_intron MGP_CASTEiJ_T0059303.1 MGP_CASTEiJ_G0026080.1 mouse_genomes_project 2 171291657 171292642 + Cse1l protein_coding retained_intron MGP_CASTEiJ_T0054359.1 MGP_CASTEiJ_G0024870.1 mouse_genomes_project 2 34983792 34984731 + MGP_CASTEiJ_P0054359 Olfr50 protein_coding protein_coding MGP_CASTEiJ_T0006945.1 MGP_CASTEiJ_G0005714.1 mouse_genomes_project 2 4213359 4219401 + Gm26565 lincRNA lincRNA MGP_CASTEiJ_T0013150.1 MGP_CASTEiJ_G0011313.1 mouse_genomes_project 2 57865688 57866017 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052759.1 MGP_CASTEiJ_G0024604.1 mouse_genomes_project 2 21734783 21737484 + MGP_CASTEiJ_P0052759 Il1f10 protein_coding protein_coding MGP_CASTEiJ_T0013425.1 MGP_CASTEiJ_G0011588.1 mouse_genomes_project 2 162239985 162240295 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054181.1 MGP_CASTEiJ_G0024835.1 mouse_genomes_project 2 32867401 32958403 - MGP_CASTEiJ_P0054181 Gapvd1 protein_coding protein_coding MGP_CASTEiJ_T0054182.1 MGP_CASTEiJ_G0024835.1 mouse_genomes_project 2 32868844 32959112 - MGP_CASTEiJ_P0054182 Gapvd1 protein_coding protein_coding MGP_CASTEiJ_T0054183.1 MGP_CASTEiJ_G0024835.1 mouse_genomes_project 2 32871314 32958503 - MGP_CASTEiJ_P0054183 Gapvd1 protein_coding protein_coding MGP_CASTEiJ_T0054184.1 MGP_CASTEiJ_G0024835.1 mouse_genomes_project 2 32871314 32958503 - MGP_CASTEiJ_P0054184 Gapvd1 protein_coding protein_coding MGP_CASTEiJ_T0054185.1 MGP_CASTEiJ_G0024835.1 mouse_genomes_project 2 32871812 32903048 - MGP_CASTEiJ_P0054185 Gapvd1 protein_coding protein_coding MGP_CASTEiJ_T0054186.1 MGP_CASTEiJ_G0024835.1 mouse_genomes_project 2 32872223 32879241 - MGP_CASTEiJ_P0054186 Gapvd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054187.1 MGP_CASTEiJ_G0024835.1 mouse_genomes_project 2 32879035 32958401 - MGP_CASTEiJ_P0054187 Gapvd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054188.1 MGP_CASTEiJ_G0024835.1 mouse_genomes_project 2 32889861 32903308 - Gapvd1 protein_coding processed_transcript MGP_CASTEiJ_T0054189.1 MGP_CASTEiJ_G0024835.1 mouse_genomes_project 2 32894623 32899791 - Gapvd1 protein_coding retained_intron MGP_CASTEiJ_T0054190.1 MGP_CASTEiJ_G0024835.1 mouse_genomes_project 2 32898561 32929112 - MGP_CASTEiJ_P0054190 Gapvd1 protein_coding protein_coding MGP_CASTEiJ_T0054191.1 MGP_CASTEiJ_G0024835.1 mouse_genomes_project 2 32898582 32929015 - MGP_CASTEiJ_P0054191 Gapvd1 protein_coding protein_coding MGP_CASTEiJ_T0054192.1 MGP_CASTEiJ_G0024835.1 mouse_genomes_project 2 32902964 32911851 - MGP_CASTEiJ_P0054192 Gapvd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054193.1 MGP_CASTEiJ_G0024835.1 mouse_genomes_project 2 32903008 32911966 - Gapvd1 protein_coding processed_transcript MGP_CASTEiJ_T0054194.1 MGP_CASTEiJ_G0024835.1 mouse_genomes_project 2 32908865 32912362 - Gapvd1 protein_coding retained_intron MGP_CASTEiJ_T0054195.1 MGP_CASTEiJ_G0024835.1 mouse_genomes_project 2 32926475 32958367 - Gapvd1 protein_coding retained_intron MGP_CASTEiJ_T0054196.1 MGP_CASTEiJ_G0024835.1 mouse_genomes_project 2 32929085 32958353 - MGP_CASTEiJ_P0054196 Gapvd1 protein_coding protein_coding MGP_CASTEiJ_T0057482.1 MGP_CASTEiJ_G0025662.1 mouse_genomes_project 2 131449180 131479226 + MGP_CASTEiJ_P0057482 Ttl protein_coding protein_coding MGP_CASTEiJ_T0057483.1 MGP_CASTEiJ_G0025662.1 mouse_genomes_project 2 131449223 131451344 + Ttl protein_coding processed_transcript MGP_CASTEiJ_T0057484.1 MGP_CASTEiJ_G0025662.1 mouse_genomes_project 2 131459302 131472681 + MGP_CASTEiJ_P0057484 Ttl protein_coding protein_coding MGP_CASTEiJ_T0099651.1 MGP_CASTEiJ_G0036564.1 mouse_genomes_project 2 118679893 118680017 - Gm25514 snRNA snRNA MGP_CASTEiJ_T0010130.1 MGP_CASTEiJ_G0008318.1 mouse_genomes_project 2 40868189 40868319 - Mir6336 miRNA miRNA MGP_CASTEiJ_T0010147.1 MGP_CASTEiJ_G0008335.1 mouse_genomes_project 2 92883985 92884046 - Mir6999 miRNA miRNA MGP_CASTEiJ_T0098872.1 MGP_CASTEiJ_G0035797.1 mouse_genomes_project 2 164514543 164516386 + Gm14222 sense_intronic sense_intronic MGP_CASTEiJ_T0059389.1 MGP_CASTEiJ_G0026100.1 mouse_genomes_project 2 172668238 172690399 - MGP_CASTEiJ_P0059389 protein_coding protein_coding MGP_CASTEiJ_T0059390.1 MGP_CASTEiJ_G0026100.1 mouse_genomes_project 2 172669471 172676849 - protein_coding retained_intron MGP_CASTEiJ_T0059391.1 MGP_CASTEiJ_G0026100.1 mouse_genomes_project 2 172669471 172690611 - MGP_CASTEiJ_P0059391 protein_coding protein_coding MGP_CASTEiJ_T0059392.1 MGP_CASTEiJ_G0026100.1 mouse_genomes_project 2 172669472 172675144 - protein_coding retained_intron MGP_CASTEiJ_T0059393.1 MGP_CASTEiJ_G0026100.1 mouse_genomes_project 2 172669706 172672452 - protein_coding retained_intron MGP_CASTEiJ_T0059394.1 MGP_CASTEiJ_G0026100.1 mouse_genomes_project 2 172669732 172690348 - MGP_CASTEiJ_P0059394 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059395.1 MGP_CASTEiJ_G0026100.1 mouse_genomes_project 2 172669778 172683341 - protein_coding retained_intron MGP_CASTEiJ_T0059396.1 MGP_CASTEiJ_G0026100.1 mouse_genomes_project 2 172670574 172690096 - protein_coding processed_transcript MGP_CASTEiJ_T0059397.1 MGP_CASTEiJ_G0026100.1 mouse_genomes_project 2 172676761 172690250 - protein_coding retained_intron MGP_CASTEiJ_T0059398.1 MGP_CASTEiJ_G0026100.1 mouse_genomes_project 2 172679966 172690382 - protein_coding retained_intron MGP_CASTEiJ_T0010117.1 MGP_CASTEiJ_G0008305.1 mouse_genomes_project 2 30181804 30181883 + Gm27805 miRNA miRNA MGP_CASTEiJ_T0003939.1 MGP_CASTEiJ_G0003502.1 mouse_genomes_project 2 120555982 120559037 + Inafm2 antisense antisense MGP_CASTEiJ_T0055557.1 MGP_CASTEiJ_G0025100.1 mouse_genomes_project 2 85017032 85018519 - MGP_CASTEiJ_P0055557 Gm19426 protein_coding protein_coding MGP_CASTEiJ_T0011181.1 MGP_CASTEiJ_G0009369.1 mouse_genomes_project 2 118674913 118675226 + Gm24914 misc_RNA misc_RNA MGP_CASTEiJ_T0055614.1 MGP_CASTEiJ_G0025118.1 mouse_genomes_project 2 85781296 85782409 - MGP_CASTEiJ_P0055614 Olfr995 protein_coding protein_coding MGP_CASTEiJ_T0003982.1 MGP_CASTEiJ_G0003533.1 mouse_genomes_project 2 146541108 146553449 - Pcsk2os1 antisense antisense MGP_CASTEiJ_T0003983.1 MGP_CASTEiJ_G0003533.1 mouse_genomes_project 2 146543617 146551598 - Pcsk2os1 antisense antisense MGP_CASTEiJ_T0003938.1 MGP_CASTEiJ_G0003501.1 mouse_genomes_project 2 120088364 120091604 + 1700054M17Rik antisense antisense MGP_CASTEiJ_T0100884.1 MGP_CASTEiJ_G0037797.1 mouse_genomes_project 2 71658150 71658277 - Gm26408 snoRNA snoRNA MGP_CASTEiJ_T0013200.1 MGP_CASTEiJ_G0011363.1 mouse_genomes_project 2 78927369 78927537 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057468.1 MGP_CASTEiJ_G0025656.1 mouse_genomes_project 2 131178698 131218485 + MGP_CASTEiJ_P0057468 Tmem87b protein_coding protein_coding MGP_CASTEiJ_T0057469.1 MGP_CASTEiJ_G0025656.1 mouse_genomes_project 2 131178919 131215581 + MGP_CASTEiJ_P0057469 Tmem87b protein_coding unknown_likely_coding MGP_CASTEiJ_T0057470.1 MGP_CASTEiJ_G0025656.1 mouse_genomes_project 2 131178964 131216031 + MGP_CASTEiJ_P0057470 Tmem87b protein_coding protein_coding MGP_CASTEiJ_T0057471.1 MGP_CASTEiJ_G0025656.1 mouse_genomes_project 2 131194756 131214554 + Tmem87b protein_coding processed_transcript MGP_CASTEiJ_T0057472.1 MGP_CASTEiJ_G0025656.1 mouse_genomes_project 2 131204286 131213963 + Tmem87b protein_coding retained_intron MGP_CASTEiJ_T0057473.1 MGP_CASTEiJ_G0025656.1 mouse_genomes_project 2 131214197 131215649 + Tmem87b protein_coding processed_transcript MGP_CASTEiJ_T0056960.1 MGP_CASTEiJ_G0025552.1 mouse_genomes_project 2 122519392 122524520 - MGP_CASTEiJ_P0056960 Lrrc57 protein_coding protein_coding MGP_CASTEiJ_T0056961.1 MGP_CASTEiJ_G0025552.1 mouse_genomes_project 2 122519392 122524675 - MGP_CASTEiJ_P0056961 Lrrc57 protein_coding protein_coding MGP_CASTEiJ_T0056962.1 MGP_CASTEiJ_G0025552.1 mouse_genomes_project 2 122519392 122524685 - MGP_CASTEiJ_P0056962 Lrrc57 protein_coding protein_coding MGP_CASTEiJ_T0056963.1 MGP_CASTEiJ_G0025552.1 mouse_genomes_project 2 122519392 122524480 - MGP_CASTEiJ_P0056963 Lrrc57 protein_coding protein_coding MGP_CASTEiJ_T0056964.1 MGP_CASTEiJ_G0025552.1 mouse_genomes_project 2 122519975 122523137 - MGP_CASTEiJ_P0056964 Lrrc57 protein_coding protein_coding MGP_CASTEiJ_T0056965.1 MGP_CASTEiJ_G0025552.1 mouse_genomes_project 2 122521148 122524673 - MGP_CASTEiJ_P0056965 Lrrc57 protein_coding protein_coding MGP_CASTEiJ_T0056966.1 MGP_CASTEiJ_G0025552.1 mouse_genomes_project 2 122523982 122524467 - Lrrc57 protein_coding retained_intron MGP_CASTEiJ_T0055667.1 MGP_CASTEiJ_G0025168.1 mouse_genomes_project 2 87179488 87180430 - MGP_CASTEiJ_P0055667 Olfr1087 protein_coding protein_coding MGP_CASTEiJ_T0003799.1 MGP_CASTEiJ_G0003403.1 mouse_genomes_project 2 23357873 23361204 + antisense antisense MGP_CASTEiJ_T0013375.1 MGP_CASTEiJ_G0011538.1 mouse_genomes_project 2 147824178 147826429 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007161.1 MGP_CASTEiJ_G0005887.1 mouse_genomes_project 2 150512559 150514088 - Gm14110 lincRNA lincRNA MGP_CASTEiJ_T0013366.1 MGP_CASTEiJ_G0011529.1 mouse_genomes_project 2 144819535 144820015 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013188.1 MGP_CASTEiJ_G0011351.1 mouse_genomes_project 2 74461022 74461481 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054211.1 MGP_CASTEiJ_G0024838.1 mouse_genomes_project 2 33010295 33028330 - Fbxw2 protein_coding processed_transcript MGP_CASTEiJ_T0054212.1 MGP_CASTEiJ_G0024838.1 mouse_genomes_project 2 33010949 33033271 - MGP_CASTEiJ_P0054212 Fbxw2 protein_coding protein_coding MGP_CASTEiJ_T0054213.1 MGP_CASTEiJ_G0024838.1 mouse_genomes_project 2 33011109 33028591 - MGP_CASTEiJ_P0054213 Fbxw2 protein_coding protein_coding MGP_CASTEiJ_T0054214.1 MGP_CASTEiJ_G0024838.1 mouse_genomes_project 2 33011110 33033433 - MGP_CASTEiJ_P0054214 Fbxw2 protein_coding protein_coding MGP_CASTEiJ_T0054215.1 MGP_CASTEiJ_G0024838.1 mouse_genomes_project 2 33011112 33033269 - MGP_CASTEiJ_P0054215 Fbxw2 protein_coding protein_coding MGP_CASTEiJ_T0054216.1 MGP_CASTEiJ_G0024838.1 mouse_genomes_project 2 33011112 33033428 - MGP_CASTEiJ_P0054216 Fbxw2 protein_coding protein_coding MGP_CASTEiJ_T0054217.1 MGP_CASTEiJ_G0024838.1 mouse_genomes_project 2 33012024 33033399 - MGP_CASTEiJ_P0054217 Fbxw2 protein_coding protein_coding MGP_CASTEiJ_T0054218.1 MGP_CASTEiJ_G0024838.1 mouse_genomes_project 2 33013049 33014426 - Fbxw2 protein_coding processed_transcript MGP_CASTEiJ_T0054219.1 MGP_CASTEiJ_G0024838.1 mouse_genomes_project 2 33017596 33033509 - Fbxw2 protein_coding processed_transcript MGP_CASTEiJ_T0054220.1 MGP_CASTEiJ_G0024838.1 mouse_genomes_project 2 33018495 33033365 - Fbxw2 protein_coding processed_transcript MGP_CASTEiJ_T0054221.1 MGP_CASTEiJ_G0024838.1 mouse_genomes_project 2 33021029 33033415 - Fbxw2 protein_coding processed_transcript MGP_CASTEiJ_T0054222.1 MGP_CASTEiJ_G0024838.1 mouse_genomes_project 2 33027251 33033405 - Fbxw2 protein_coding retained_intron MGP_CASTEiJ_T0054223.1 MGP_CASTEiJ_G0024838.1 mouse_genomes_project 2 33028013 33033220 - Fbxw2 protein_coding processed_transcript MGP_CASTEiJ_T0054224.1 MGP_CASTEiJ_G0024838.1 mouse_genomes_project 2 33032456 33033413 - Fbxw2 protein_coding processed_transcript MGP_CASTEiJ_T0010146.1 MGP_CASTEiJ_G0008334.1 mouse_genomes_project 2 92309831 92309936 - Gm22071 miRNA miRNA MGP_CASTEiJ_T0059873.1 MGP_CASTEiJ_G0026205.1 mouse_genomes_project 2 184478031 184504579 + MGP_CASTEiJ_P0059873 Prpf6 protein_coding protein_coding MGP_CASTEiJ_T0059877.1 MGP_CASTEiJ_G0026205.1 mouse_genomes_project 2 184487187 184550566 + MGP_CASTEiJ_P0059877 Prpf6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059878.1 MGP_CASTEiJ_G0026205.1 mouse_genomes_project 2 184487280 184550550 + MGP_CASTEiJ_P0059878 Prpf6 protein_coding protein_coding MGP_CASTEiJ_T0059879.1 MGP_CASTEiJ_G0026205.1 mouse_genomes_project 2 184487283 184550559 + MGP_CASTEiJ_P0059879 Prpf6 protein_coding protein_coding MGP_CASTEiJ_T0059880.1 MGP_CASTEiJ_G0026205.1 mouse_genomes_project 2 184487337 184534761 + Prpf6 protein_coding retained_intron MGP_CASTEiJ_T0058562.1 MGP_CASTEiJ_G0025928.1 mouse_genomes_project 2 159573910 159578215 - MGP_CASTEiJ_P0058562 Gdf5 protein_coding protein_coding MGP_CASTEiJ_T0017097.1 MGP_CASTEiJ_G0014773.1 mouse_genomes_project 2 120035972 120062754 - Gm29232 processed_transcript processed_transcript MGP_CASTEiJ_T0007151.1 MGP_CASTEiJ_G0005878.1 mouse_genomes_project 2 138531395 138532376 - Gm14210 lincRNA lincRNA MGP_CASTEiJ_T0010164.1 MGP_CASTEiJ_G0008352.1 mouse_genomes_project 2 118916598 118916698 + Mir674 miRNA miRNA MGP_CASTEiJ_T0101567.1 MGP_CASTEiJ_G0038441.1 mouse_genomes_project 2 21943491 21944077 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0102251.1 MGP_CASTEiJ_G0038976.1 mouse_genomes_project 2 141712471 141713056 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0057213.1 MGP_CASTEiJ_G0025599.1 mouse_genomes_project 2 124767610 124790370 - MGP_CASTEiJ_P0057213 Slc30a4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057214.1 MGP_CASTEiJ_G0025599.1 mouse_genomes_project 2 124769768 124790614 - MGP_CASTEiJ_P0057214 Slc30a4 protein_coding protein_coding MGP_CASTEiJ_T0102234.1 MGP_CASTEiJ_G0038959.1 mouse_genomes_project 2 88067615 88182602 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0052477.1 MGP_CASTEiJ_G0024550.1 mouse_genomes_project 2 10373099 10570468 - MGP_CASTEiJ_P0052477 Rsu1 protein_coding protein_coding MGP_CASTEiJ_T0052478.1 MGP_CASTEiJ_G0024550.1 mouse_genomes_project 2 10373290 10570550 - MGP_CASTEiJ_P0052478 Rsu1 protein_coding protein_coding MGP_CASTEiJ_T0052479.1 MGP_CASTEiJ_G0024550.1 mouse_genomes_project 2 10373474 10570529 - MGP_CASTEiJ_P0052479 Rsu1 protein_coding protein_coding MGP_CASTEiJ_T0052480.1 MGP_CASTEiJ_G0024550.1 mouse_genomes_project 2 10468464 10570443 - Rsu1 protein_coding retained_intron MGP_CASTEiJ_T0052481.1 MGP_CASTEiJ_G0024550.1 mouse_genomes_project 2 10514804 10570468 - Rsu1 protein_coding retained_intron MGP_CASTEiJ_T0052482.1 MGP_CASTEiJ_G0024550.1 mouse_genomes_project 2 10515570 10570405 - MGP_CASTEiJ_P0052482 Rsu1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052483.1 MGP_CASTEiJ_G0024550.1 mouse_genomes_project 2 10517351 10570356 - Rsu1 protein_coding retained_intron MGP_CASTEiJ_T0052484.1 MGP_CASTEiJ_G0024550.1 mouse_genomes_project 2 10517864 10570426 - MGP_CASTEiJ_P0052484 Rsu1 protein_coding protein_coding MGP_CASTEiJ_T0052485.1 MGP_CASTEiJ_G0024550.1 mouse_genomes_project 2 10566569 10570446 - Rsu1 protein_coding retained_intron MGP_CASTEiJ_T0052486.1 MGP_CASTEiJ_G0024550.1 mouse_genomes_project 2 10569894 10570431 - Rsu1 protein_coding retained_intron MGP_CASTEiJ_T0056820.1 MGP_CASTEiJ_G0025533.1 mouse_genomes_project 2 121624823 121633669 - MGP_CASTEiJ_P0056820 Ltk protein_coding protein_coding MGP_CASTEiJ_T0056821.1 MGP_CASTEiJ_G0025533.1 mouse_genomes_project 2 121624825 121631977 - Ltk protein_coding retained_intron MGP_CASTEiJ_T0056822.1 MGP_CASTEiJ_G0025533.1 mouse_genomes_project 2 121624825 121633668 - MGP_CASTEiJ_P0056822 Ltk protein_coding protein_coding MGP_CASTEiJ_T0056823.1 MGP_CASTEiJ_G0025533.1 mouse_genomes_project 2 121624829 121633805 - MGP_CASTEiJ_P0056823 Ltk protein_coding protein_coding MGP_CASTEiJ_T0056824.1 MGP_CASTEiJ_G0025533.1 mouse_genomes_project 2 121624831 121631981 - MGP_CASTEiJ_P0056824 Ltk protein_coding protein_coding MGP_CASTEiJ_T0056825.1 MGP_CASTEiJ_G0025533.1 mouse_genomes_project 2 121624833 121631975 - Ltk protein_coding retained_intron MGP_CASTEiJ_T0056815.1 MGP_CASTEiJ_G0025531.1 mouse_genomes_project 2 121544869 121608986 + MGP_CASTEiJ_P0056815 Rtf1 protein_coding protein_coding MGP_CASTEiJ_T0056816.1 MGP_CASTEiJ_G0025531.1 mouse_genomes_project 2 121544873 121562956 + Rtf1 protein_coding processed_transcript MGP_CASTEiJ_T0056817.1 MGP_CASTEiJ_G0025531.1 mouse_genomes_project 2 121581991 121583376 + Rtf1 protein_coding retained_intron MGP_CASTEiJ_T0056818.1 MGP_CASTEiJ_G0025531.1 mouse_genomes_project 2 121600256 121601219 + Rtf1 protein_coding retained_intron MGP_CASTEiJ_T0058371.1 MGP_CASTEiJ_G0025883.1 mouse_genomes_project 2 157420113 157442007 + MGP_CASTEiJ_P0058371 Bpifa6 protein_coding protein_coding MGP_CASTEiJ_T0099650.1 MGP_CASTEiJ_G0036563.1 mouse_genomes_project 2 114829302 114829468 + Gm26505 snRNA snRNA MGP_CASTEiJ_T0010169.1 MGP_CASTEiJ_G0008357.1 mouse_genomes_project 2 124071735 124071803 + Gm27325 miRNA miRNA MGP_CASTEiJ_T0013156.1 MGP_CASTEiJ_G0011319.1 mouse_genomes_project 2 59087395 59087704 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003791.1 MGP_CASTEiJ_G0003399.1 mouse_genomes_project 2 22713147 22715706 - Gm38287 antisense antisense MGP_CASTEiJ_T0010208.1 MGP_CASTEiJ_G0008396.1 mouse_genomes_project 2 183192366 183192443 + Mir1a-1 miRNA miRNA MGP_CASTEiJ_T0011187.1 MGP_CASTEiJ_G0009375.1 mouse_genomes_project 2 150434953 150435277 - Gm22261 misc_RNA misc_RNA MGP_CASTEiJ_T0058251.1 MGP_CASTEiJ_G0025854.1 mouse_genomes_project 2 156020635 156021571 + MGP_CASTEiJ_P0058251 Mcts2 protein_coding protein_coding MGP_CASTEiJ_T0013252.1 MGP_CASTEiJ_G0011415.1 mouse_genomes_project 2 94877409 94877914 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017180.1 MGP_CASTEiJ_G0014812.1 mouse_genomes_project 2 182751431 182753584 + processed_transcript processed_transcript MGP_CASTEiJ_T0017181.1 MGP_CASTEiJ_G0014812.1 mouse_genomes_project 2 182752023 182752558 + processed_transcript processed_transcript MGP_CASTEiJ_T0098567.1 MGP_CASTEiJ_G0035498.1 mouse_genomes_project 2 18706504 18706635 + Gm25368 rRNA rRNA MGP_CASTEiJ_T0013233.1 MGP_CASTEiJ_G0011396.1 mouse_genomes_project 2 87930586 87931748 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007072.1 MGP_CASTEiJ_G0005816.1 mouse_genomes_project 2 92991763 93047308 - lincRNA lincRNA MGP_CASTEiJ_T0013009.1 MGP_CASTEiJ_G0011172.1 mouse_genomes_project 2 1993171 1993396 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053486.1 MGP_CASTEiJ_G0024736.1 mouse_genomes_project 2 27114475 27302815 + MGP_CASTEiJ_P0053486 Med27 protein_coding protein_coding MGP_CASTEiJ_T0053487.1 MGP_CASTEiJ_G0024736.1 mouse_genomes_project 2 27114489 27255977 + MGP_CASTEiJ_P0053487 Med27 protein_coding protein_coding MGP_CASTEiJ_T0053488.1 MGP_CASTEiJ_G0024736.1 mouse_genomes_project 2 27150023 27287436 + MGP_CASTEiJ_P0053488 Med27 protein_coding protein_coding MGP_CASTEiJ_T0053489.1 MGP_CASTEiJ_G0024736.1 mouse_genomes_project 2 27150023 27278327 + MGP_CASTEiJ_P0053489 Med27 protein_coding protein_coding MGP_CASTEiJ_T0053490.1 MGP_CASTEiJ_G0024736.1 mouse_genomes_project 2 27150697 27278224 + MGP_CASTEiJ_P0053490 Med27 protein_coding protein_coding MGP_CASTEiJ_T0053491.1 MGP_CASTEiJ_G0024736.1 mouse_genomes_project 2 27150716 27302577 + MGP_CASTEiJ_P0053491 Med27 protein_coding protein_coding MGP_CASTEiJ_T0053492.1 MGP_CASTEiJ_G0024736.1 mouse_genomes_project 2 27150788 27255177 + MGP_CASTEiJ_P0053492 Med27 protein_coding protein_coding MGP_CASTEiJ_T0053493.1 MGP_CASTEiJ_G0024736.1 mouse_genomes_project 2 27162461 27300869 + Med27 protein_coding processed_transcript MGP_CASTEiJ_T0053494.1 MGP_CASTEiJ_G0024736.1 mouse_genomes_project 2 27274506 27278549 + Med27 protein_coding retained_intron MGP_CASTEiJ_T0053495.1 MGP_CASTEiJ_G0024736.1 mouse_genomes_project 2 27282860 27302703 + Med27 protein_coding processed_transcript MGP_CASTEiJ_T0055787.1 MGP_CASTEiJ_G0025273.1 mouse_genomes_project 2 90031580 90032513 - MGP_CASTEiJ_P0055787 Olfr1226 protein_coding protein_coding MGP_CASTEiJ_T0057022.1 MGP_CASTEiJ_G0025563.1 mouse_genomes_project 2 123078544 123091621 - MGP_CASTEiJ_P0057022 Lcmt2 protein_coding protein_coding MGP_CASTEiJ_T0057023.1 MGP_CASTEiJ_G0025563.1 mouse_genomes_project 2 123088840 123091896 - MGP_CASTEiJ_P0057023 Lcmt2 protein_coding protein_coding MGP_CASTEiJ_T0055499.1 MGP_CASTEiJ_G0025089.1 mouse_genomes_project 2 84572114 84675584 - MGP_CASTEiJ_P0055499 Calcrl protein_coding protein_coding MGP_CASTEiJ_T0055500.1 MGP_CASTEiJ_G0025089.1 mouse_genomes_project 2 84572147 84619048 - MGP_CASTEiJ_P0055500 Calcrl protein_coding protein_coding MGP_CASTEiJ_T0055501.1 MGP_CASTEiJ_G0025089.1 mouse_genomes_project 2 84618984 84675439 - Calcrl protein_coding processed_transcript MGP_CASTEiJ_T0003872.1 MGP_CASTEiJ_G0003462.1 mouse_genomes_project 2 70031087 70036819 - Erich2os antisense antisense MGP_CASTEiJ_T0001023.1 MGP_CASTEiJ_G0000959.1 mouse_genomes_project 2 34102011 34105008 + TEC TEC MGP_CASTEiJ_T0059044.1 MGP_CASTEiJ_G0026021.1 mouse_genomes_project 2 168381998 168386934 - MGP_CASTEiJ_P0059044 protein_coding protein_coding MGP_CASTEiJ_T0010108.1 MGP_CASTEiJ_G0008296.1 mouse_genomes_project 2 26473382 26473456 + Mir3088 miRNA miRNA MGP_CASTEiJ_T0017126.1 MGP_CASTEiJ_G0014785.1 mouse_genomes_project 2 132978734 133000020 - 4930473A02Rik processed_transcript processed_transcript MGP_CASTEiJ_T0006990.1 MGP_CASTEiJ_G0005748.1 mouse_genomes_project 2 32082841 32089175 - Gm13403 lincRNA lincRNA MGP_CASTEiJ_T0006991.1 MGP_CASTEiJ_G0005748.1 mouse_genomes_project 2 32084956 32089207 - Gm13403 lincRNA lincRNA MGP_CASTEiJ_T0003929.1 MGP_CASTEiJ_G0003496.1 mouse_genomes_project 2 115057864 115061180 - Gm13964 antisense antisense MGP_CASTEiJ_T0013153.1 MGP_CASTEiJ_G0011316.1 mouse_genomes_project 2 58342111 58342540 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011179.1 MGP_CASTEiJ_G0009367.1 mouse_genomes_project 2 106428396 106430565 - Gm27308 misc_RNA misc_RNA MGP_CASTEiJ_T0057766.1 MGP_CASTEiJ_G0025723.1 mouse_genomes_project 2 135127349 135140348 - Gpcpd1 protein_coding retained_intron MGP_CASTEiJ_T0057767.1 MGP_CASTEiJ_G0025723.1 mouse_genomes_project 2 135127349 135177626 - MGP_CASTEiJ_P0057767 Gpcpd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057768.1 MGP_CASTEiJ_G0025723.1 mouse_genomes_project 2 135127349 135177565 - MGP_CASTEiJ_P0057768 Gpcpd1 protein_coding protein_coding MGP_CASTEiJ_T0057769.1 MGP_CASTEiJ_G0025723.1 mouse_genomes_project 2 135127349 135177611 - MGP_CASTEiJ_P0057769 Gpcpd1 protein_coding protein_coding MGP_CASTEiJ_T0057770.1 MGP_CASTEiJ_G0025723.1 mouse_genomes_project 2 135127349 135177613 - MGP_CASTEiJ_P0057770 Gpcpd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057771.1 MGP_CASTEiJ_G0025723.1 mouse_genomes_project 2 135127349 135177556 - MGP_CASTEiJ_P0057771 Gpcpd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057772.1 MGP_CASTEiJ_G0025723.1 mouse_genomes_project 2 135127350 135177626 - MGP_CASTEiJ_P0057772 Gpcpd1 protein_coding protein_coding MGP_CASTEiJ_T0057773.1 MGP_CASTEiJ_G0025723.1 mouse_genomes_project 2 135131014 135177511 - MGP_CASTEiJ_P0057773 Gpcpd1 protein_coding protein_coding MGP_CASTEiJ_T0057774.1 MGP_CASTEiJ_G0025723.1 mouse_genomes_project 2 135132448 135136417 - MGP_CASTEiJ_P0057774 Gpcpd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057775.1 MGP_CASTEiJ_G0025723.1 mouse_genomes_project 2 135148761 135177565 - MGP_CASTEiJ_P0057775 Gpcpd1 protein_coding protein_coding MGP_CASTEiJ_T0057776.1 MGP_CASTEiJ_G0025723.1 mouse_genomes_project 2 135152194 135187091 - MGP_CASTEiJ_P0057776 Gpcpd1 protein_coding protein_coding MGP_CASTEiJ_T0057777.1 MGP_CASTEiJ_G0025723.1 mouse_genomes_project 2 135152306 135177595 - Gpcpd1 protein_coding processed_transcript MGP_CASTEiJ_T0057778.1 MGP_CASTEiJ_G0025723.1 mouse_genomes_project 2 135164164 135177624 - Gpcpd1 protein_coding processed_transcript MGP_CASTEiJ_T0058167.1 MGP_CASTEiJ_G0025821.1 mouse_genomes_project 2 154846894 154889925 - MGP_CASTEiJ_P0058167 Snph protein_coding protein_coding MGP_CASTEiJ_T0058168.1 MGP_CASTEiJ_G0025821.1 mouse_genomes_project 2 154846894 154889949 - MGP_CASTEiJ_P0058168 Snph protein_coding protein_coding MGP_CASTEiJ_T0058169.1 MGP_CASTEiJ_G0025821.1 mouse_genomes_project 2 154846909 154889943 - MGP_CASTEiJ_P0058169 Snph protein_coding protein_coding MGP_CASTEiJ_T0058170.1 MGP_CASTEiJ_G0025821.1 mouse_genomes_project 2 154848077 154889969 - MGP_CASTEiJ_P0058170 Snph protein_coding protein_coding MGP_CASTEiJ_T0058171.1 MGP_CASTEiJ_G0025821.1 mouse_genomes_project 2 154853502 154889847 - MGP_CASTEiJ_P0058171 Snph protein_coding protein_coding MGP_CASTEiJ_T0058172.1 MGP_CASTEiJ_G0025821.1 mouse_genomes_project 2 154857162 154889902 - Snph protein_coding retained_intron MGP_CASTEiJ_T0058173.1 MGP_CASTEiJ_G0025821.1 mouse_genomes_project 2 154857325 154889916 - MGP_CASTEiJ_P0058173 Snph protein_coding protein_coding MGP_CASTEiJ_T0058174.1 MGP_CASTEiJ_G0025821.1 mouse_genomes_project 2 154857342 154889937 - MGP_CASTEiJ_P0058174 Snph protein_coding protein_coding MGP_CASTEiJ_T0058175.1 MGP_CASTEiJ_G0025821.1 mouse_genomes_project 2 154857550 154889949 - Snph protein_coding processed_transcript MGP_CASTEiJ_T0058176.1 MGP_CASTEiJ_G0025821.1 mouse_genomes_project 2 154878540 154889943 - Snph protein_coding processed_transcript MGP_CASTEiJ_T0058177.1 MGP_CASTEiJ_G0025821.1 mouse_genomes_project 2 154889108 154889929 - Snph protein_coding retained_intron MGP_CASTEiJ_T0055657.1 MGP_CASTEiJ_G0025159.1 mouse_genomes_project 2 86803255 86813181 + MGP_CASTEiJ_P0055657 Olfr1065 protein_coding protein_coding MGP_CASTEiJ_T0013195.1 MGP_CASTEiJ_G0011358.1 mouse_genomes_project 2 77227063 77227469 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000994.1 MGP_CASTEiJ_G0000930.1 mouse_genomes_project 2 10292746 10295966 + TEC TEC MGP_CASTEiJ_T0013091.1 MGP_CASTEiJ_G0011254.1 mouse_genomes_project 2 35255189 35259584 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055274.1 MGP_CASTEiJ_G0025041.1 mouse_genomes_project 2 74504049 74507375 + MGP_CASTEiJ_P0055274 Hoxd13 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055275.1 MGP_CASTEiJ_G0025041.1 mouse_genomes_project 2 74504062 74507373 + MGP_CASTEiJ_P0055275 Hoxd13 protein_coding protein_coding MGP_CASTEiJ_T0013331.1 MGP_CASTEiJ_G0011494.1 mouse_genomes_project 2 129977270 129979119 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013025.1 MGP_CASTEiJ_G0011188.1 mouse_genomes_project 2 8895642 8896905 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003930.1 MGP_CASTEiJ_G0003497.1 mouse_genomes_project 2 115257035 115277054 - 4930533B01Rik antisense antisense MGP_CASTEiJ_T0055003.1 MGP_CASTEiJ_G0024992.1 mouse_genomes_project 2 68610138 68628829 + G6pc2 protein_coding processed_transcript MGP_CASTEiJ_T0055004.1 MGP_CASTEiJ_G0024992.1 mouse_genomes_project 2 68622112 68629989 + MGP_CASTEiJ_P0055004 G6pc2 protein_coding protein_coding MGP_CASTEiJ_T0055005.1 MGP_CASTEiJ_G0024992.1 mouse_genomes_project 2 68622139 68629989 + MGP_CASTEiJ_P0055005 G6pc2 protein_coding protein_coding MGP_CASTEiJ_T0055006.1 MGP_CASTEiJ_G0024992.1 mouse_genomes_project 2 68622169 68628981 + G6pc2 protein_coding processed_transcript MGP_CASTEiJ_T0056129.1 MGP_CASTEiJ_G0025352.1 mouse_genomes_project 2 93357548 93358614 + 1700029I15Rik protein_coding retained_intron MGP_CASTEiJ_T0056130.1 MGP_CASTEiJ_G0025352.1 mouse_genomes_project 2 93357928 93358614 + MGP_CASTEiJ_P0056130 1700029I15Rik protein_coding protein_coding MGP_CASTEiJ_T0056131.1 MGP_CASTEiJ_G0025352.1 mouse_genomes_project 2 93357928 93360695 + MGP_CASTEiJ_P0056131 1700029I15Rik protein_coding protein_coding MGP_CASTEiJ_T0056132.1 MGP_CASTEiJ_G0025352.1 mouse_genomes_project 2 93357928 93358600 + MGP_CASTEiJ_P0056132 1700029I15Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058975.1 MGP_CASTEiJ_G0025999.1 mouse_genomes_project 2 167467198 167485199 - MGP_CASTEiJ_P0058975 Oser1 protein_coding protein_coding MGP_CASTEiJ_T0058976.1 MGP_CASTEiJ_G0025999.1 mouse_genomes_project 2 167467229 167490418 - MGP_CASTEiJ_P0058976 Oser1 protein_coding protein_coding MGP_CASTEiJ_T0058977.1 MGP_CASTEiJ_G0025999.1 mouse_genomes_project 2 167467942 167484815 - Oser1 protein_coding processed_transcript MGP_CASTEiJ_T0058978.1 MGP_CASTEiJ_G0025999.1 mouse_genomes_project 2 167467976 167476087 - Oser1 protein_coding processed_transcript MGP_CASTEiJ_T0058979.1 MGP_CASTEiJ_G0025999.1 mouse_genomes_project 2 167468271 167490418 - Oser1 protein_coding processed_transcript MGP_CASTEiJ_T0058980.1 MGP_CASTEiJ_G0025999.1 mouse_genomes_project 2 167468460 167481474 - MGP_CASTEiJ_P0058980 Oser1 protein_coding protein_coding MGP_CASTEiJ_T0058981.1 MGP_CASTEiJ_G0025999.1 mouse_genomes_project 2 167488561 167490270 - Oser1 protein_coding processed_transcript MGP_CASTEiJ_T0054684.1 MGP_CASTEiJ_G0024939.1 mouse_genomes_project 2 54335369 54503359 + MGP_CASTEiJ_P0054684 Kcnj3 protein_coding protein_coding MGP_CASTEiJ_T0054685.1 MGP_CASTEiJ_G0024939.1 mouse_genomes_project 2 54336554 54500691 + MGP_CASTEiJ_P0054685 Kcnj3 protein_coding protein_coding MGP_CASTEiJ_T0054686.1 MGP_CASTEiJ_G0024939.1 mouse_genomes_project 2 54336563 54503354 + MGP_CASTEiJ_P0054686 Kcnj3 protein_coding protein_coding MGP_CASTEiJ_T0054687.1 MGP_CASTEiJ_G0024939.1 mouse_genomes_project 2 54336565 54359703 + MGP_CASTEiJ_P0054687 Kcnj3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0010088.1 MGP_CASTEiJ_G0008276.1 mouse_genomes_project 2 7755307 7755397 + Gm24806 miRNA miRNA MGP_CASTEiJ_T0055058.1 MGP_CASTEiJ_G0025004.1 mouse_genomes_project 2 69340083 69355891 - MGP_CASTEiJ_P0055058 Mettl5 protein_coding protein_coding MGP_CASTEiJ_T0055059.1 MGP_CASTEiJ_G0025004.1 mouse_genomes_project 2 69340099 69355873 - MGP_CASTEiJ_P0055059 Mettl5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055060.1 MGP_CASTEiJ_G0025004.1 mouse_genomes_project 2 69340103 69343577 - Mettl5 protein_coding retained_intron MGP_CASTEiJ_T0055061.1 MGP_CASTEiJ_G0025004.1 mouse_genomes_project 2 69346809 69355880 - Mettl5 protein_coding retained_intron MGP_CASTEiJ_T0100904.1 MGP_CASTEiJ_G0037817.1 mouse_genomes_project 2 132470334 132470421 + Gm22424 snoRNA snoRNA MGP_CASTEiJ_T0056653.1 MGP_CASTEiJ_G0025489.1 mouse_genomes_project 2 118579492 118592957 + MGP_CASTEiJ_P0056653 Tmco5 protein_coding protein_coding MGP_CASTEiJ_T0056654.1 MGP_CASTEiJ_G0025489.1 mouse_genomes_project 2 118579495 118592913 + MGP_CASTEiJ_P0056654 Tmco5 protein_coding protein_coding MGP_CASTEiJ_T0056655.1 MGP_CASTEiJ_G0025489.1 mouse_genomes_project 2 118579509 118593270 + MGP_CASTEiJ_P0056655 Tmco5 protein_coding protein_coding MGP_CASTEiJ_T0056656.1 MGP_CASTEiJ_G0025489.1 mouse_genomes_project 2 118588960 118593270 + Tmco5 protein_coding processed_transcript MGP_CASTEiJ_T0100923.1 MGP_CASTEiJ_G0037836.1 mouse_genomes_project 2 162192735 162192867 - Gm23925 snoRNA snoRNA MGP_CASTEiJ_T0059070.1 MGP_CASTEiJ_G0026031.1 mouse_genomes_project 2 168616939 168620338 - MGP_CASTEiJ_P0059070 Trp53tg5 protein_coding protein_coding MGP_CASTEiJ_T0052297.1 MGP_CASTEiJ_G0024527.1 mouse_genomes_project 2 3425854 3562728 + MGP_CASTEiJ_P0052297 Usp6nl protein_coding protein_coding MGP_CASTEiJ_T0052298.1 MGP_CASTEiJ_G0024527.1 mouse_genomes_project 2 3425959 3534716 + Usp6nl protein_coding processed_transcript MGP_CASTEiJ_T0052299.1 MGP_CASTEiJ_G0024527.1 mouse_genomes_project 2 3455121 3557025 + MGP_CASTEiJ_P0052299 Usp6nl protein_coding protein_coding MGP_CASTEiJ_T0052300.1 MGP_CASTEiJ_G0024527.1 mouse_genomes_project 2 3534625 3538437 + Usp6nl protein_coding processed_transcript MGP_CASTEiJ_T0058314.1 MGP_CASTEiJ_G0025868.1 mouse_genomes_project 2 156583360 156586433 - MGP_CASTEiJ_P0058314 Tspyl3 protein_coding protein_coding MGP_CASTEiJ_T0013116.1 MGP_CASTEiJ_G0011279.1 mouse_genomes_project 2 45022669 45023019 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054531.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43545544 43685670 - MGP_CASTEiJ_P0054531 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054532.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43549041 43680645 - MGP_CASTEiJ_P0054532 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054533.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43549043 43680939 - MGP_CASTEiJ_P0054533 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054534.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43549043 43678214 - MGP_CASTEiJ_P0054534 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054535.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43551557 43680662 - MGP_CASTEiJ_P0054535 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054536.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43551624 43677987 - MGP_CASTEiJ_P0054536 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054537.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43551665 43680550 - MGP_CASTEiJ_P0054537 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054538.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43561139 43678151 - MGP_CASTEiJ_P0054538 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054539.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43566026 43678871 - MGP_CASTEiJ_P0054539 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054540.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43566051 43586239 - MGP_CASTEiJ_P0054540 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054541.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43566117 43677943 - MGP_CASTEiJ_P0054541 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054542.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43567016 43621150 - Zeb2 protein_coding processed_transcript MGP_CASTEiJ_T0054543.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43567018 43678853 - MGP_CASTEiJ_P0054543 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054544.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43572851 43678773 - Zeb2 protein_coding processed_transcript MGP_CASTEiJ_T0054545.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43580863 43680928 - MGP_CASTEiJ_P0054545 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054546.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43584180 43680749 - Zeb2 protein_coding retained_intron MGP_CASTEiJ_T0054547.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43584234 43680905 - Zeb2 protein_coding retained_intron MGP_CASTEiJ_T0054548.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43586227 43678326 - MGP_CASTEiJ_P0054548 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054549.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43586312 43680944 - MGP_CASTEiJ_P0054549 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054550.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43586383 43678453 - MGP_CASTEiJ_P0054550 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054551.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43662483 43678432 - MGP_CASTEiJ_P0054551 Zeb2 protein_coding protein_coding MGP_CASTEiJ_T0054552.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43671781 43680908 - Zeb2 protein_coding processed_transcript MGP_CASTEiJ_T0054553.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43671781 43678186 - Zeb2 protein_coding processed_transcript MGP_CASTEiJ_T0054554.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43671781 43680876 - Zeb2 protein_coding processed_transcript MGP_CASTEiJ_T0054555.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43672992 43677775 - Zeb2 protein_coding processed_transcript MGP_CASTEiJ_T0054556.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43673853 43678183 - Zeb2 protein_coding processed_transcript MGP_CASTEiJ_T0054557.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43674212 43680661 - Zeb2 protein_coding retained_intron MGP_CASTEiJ_T0054558.1 MGP_CASTEiJ_G0024915.1 mouse_genomes_project 2 43677787 43681132 - Zeb2 protein_coding processed_transcript MGP_CASTEiJ_T0056548.1 MGP_CASTEiJ_G0025450.1 mouse_genomes_project 2 113057511 113058450 - MGP_CASTEiJ_P0056548 protein_coding protein_coding MGP_CASTEiJ_T0100858.1 MGP_CASTEiJ_G0037771.1 mouse_genomes_project 2 24535179 24535253 + Gm23969 snoRNA snoRNA MGP_CASTEiJ_T0056423.1 MGP_CASTEiJ_G0025412.1 mouse_genomes_project 2 106431639 106482489 + MGP_CASTEiJ_P0056423 Wt1 protein_coding protein_coding MGP_CASTEiJ_T0056424.1 MGP_CASTEiJ_G0025412.1 mouse_genomes_project 2 106432061 106499989 + MGP_CASTEiJ_P0056424 Wt1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056425.1 MGP_CASTEiJ_G0025412.1 mouse_genomes_project 2 106432106 106481215 + MGP_CASTEiJ_P0056425 Wt1 protein_coding protein_coding MGP_CASTEiJ_T0056426.1 MGP_CASTEiJ_G0025412.1 mouse_genomes_project 2 106432111 106482497 + MGP_CASTEiJ_P0056426 Wt1 protein_coding protein_coding MGP_CASTEiJ_T0056427.1 MGP_CASTEiJ_G0025412.1 mouse_genomes_project 2 106432111 106481138 + MGP_CASTEiJ_P0056427 Wt1 protein_coding protein_coding MGP_CASTEiJ_T0056428.1 MGP_CASTEiJ_G0025412.1 mouse_genomes_project 2 106435900 106439019 + Wt1 protein_coding retained_intron MGP_CASTEiJ_T0056429.1 MGP_CASTEiJ_G0025412.1 mouse_genomes_project 2 106435983 106482493 + MGP_CASTEiJ_P0056429 Wt1 protein_coding protein_coding MGP_CASTEiJ_T0056430.1 MGP_CASTEiJ_G0025412.1 mouse_genomes_project 2 106435983 106482489 + MGP_CASTEiJ_P0056430 Wt1 protein_coding protein_coding MGP_CASTEiJ_T0056431.1 MGP_CASTEiJ_G0025412.1 mouse_genomes_project 2 106471625 106478866 + Wt1 protein_coding retained_intron MGP_CASTEiJ_T0056794.1 MGP_CASTEiJ_G0025524.1 mouse_genomes_project 2 121188629 121191780 + MGP_CASTEiJ_P0056794 Chac1 protein_coding protein_coding MGP_CASTEiJ_T0057738.1 MGP_CASTEiJ_G0025718.1 mouse_genomes_project 2 134606067 134703937 - MGP_CASTEiJ_P0057738 Slc23a2 protein_coding protein_coding MGP_CASTEiJ_T0057739.1 MGP_CASTEiJ_G0025718.1 mouse_genomes_project 2 134608962 134610234 - Slc23a2 protein_coding processed_transcript MGP_CASTEiJ_T0057740.1 MGP_CASTEiJ_G0025718.1 mouse_genomes_project 2 134614264 134620694 - Slc23a2 protein_coding processed_transcript MGP_CASTEiJ_T0057741.1 MGP_CASTEiJ_G0025718.1 mouse_genomes_project 2 134628051 134703937 - Slc23a2 protein_coding processed_transcript MGP_CASTEiJ_T0057742.1 MGP_CASTEiJ_G0025718.1 mouse_genomes_project 2 134628826 134630960 - Slc23a2 protein_coding processed_transcript MGP_CASTEiJ_T0057743.1 MGP_CASTEiJ_G0025718.1 mouse_genomes_project 2 134642051 134648881 - Slc23a2 protein_coding processed_transcript MGP_CASTEiJ_T0057744.1 MGP_CASTEiJ_G0025718.1 mouse_genomes_project 2 134648475 134668392 - MGP_CASTEiJ_P0057744 Slc23a2 protein_coding protein_coding MGP_CASTEiJ_T0013282.1 MGP_CASTEiJ_G0011445.1 mouse_genomes_project 2 105856599 105856786 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013216.1 MGP_CASTEiJ_G0011379.1 mouse_genomes_project 2 83719792 83720002 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003793.1 MGP_CASTEiJ_G0003401.1 mouse_genomes_project 2 23164335 23189279 + Fcnaos antisense antisense MGP_CASTEiJ_T0003794.1 MGP_CASTEiJ_G0003401.1 mouse_genomes_project 2 23172150 23189279 + Fcnaos antisense antisense MGP_CASTEiJ_T0003795.1 MGP_CASTEiJ_G0003401.1 mouse_genomes_project 2 23185261 23189280 + Fcnaos antisense antisense MGP_CASTEiJ_T0003796.1 MGP_CASTEiJ_G0003401.1 mouse_genomes_project 2 23188168 23189282 + Fcnaos antisense antisense MGP_CASTEiJ_T0057429.1 MGP_CASTEiJ_G0025647.1 mouse_genomes_project 2 130034623 130085325 - MGP_CASTEiJ_P0057429 Nphp1 protein_coding protein_coding MGP_CASTEiJ_T0057430.1 MGP_CASTEiJ_G0025647.1 mouse_genomes_project 2 130034625 130038582 - Nphp1 protein_coding processed_transcript MGP_CASTEiJ_T0057431.1 MGP_CASTEiJ_G0025647.1 mouse_genomes_project 2 130034627 130085368 - MGP_CASTEiJ_P0057431 Nphp1 protein_coding protein_coding MGP_CASTEiJ_T0057432.1 MGP_CASTEiJ_G0025647.1 mouse_genomes_project 2 130039664 130048252 - Nphp1 protein_coding retained_intron MGP_CASTEiJ_T0057433.1 MGP_CASTEiJ_G0025647.1 mouse_genomes_project 2 130059380 130085401 - MGP_CASTEiJ_P0057433 Nphp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003789.1 MGP_CASTEiJ_G0003397.1 mouse_genomes_project 2 18491937 18494045 + antisense antisense MGP_CASTEiJ_T0007059.1 MGP_CASTEiJ_G0005805.1 mouse_genomes_project 2 77297053 77299133 + Gm13943 lincRNA lincRNA MGP_CASTEiJ_T0013293.1 MGP_CASTEiJ_G0011456.1 mouse_genomes_project 2 109994039 109994299 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098867.1 MGP_CASTEiJ_G0035792.1 mouse_genomes_project 2 57679972 57707495 + Gm13558 sense_intronic sense_intronic MGP_CASTEiJ_T0102225.1 MGP_CASTEiJ_G0038950.1 mouse_genomes_project 2 86812071 86813012 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013122.1 MGP_CASTEiJ_G0011285.1 mouse_genomes_project 2 48038120 48038903 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003857.1 MGP_CASTEiJ_G0003448.1 mouse_genomes_project 2 61438722 61556753 + Gm13561 antisense antisense MGP_CASTEiJ_T0053448.1 MGP_CASTEiJ_G0024729.1 mouse_genomes_project 2 26566716 26584458 - MGP_CASTEiJ_P0053448 Gtf3c4 protein_coding protein_coding MGP_CASTEiJ_T0053449.1 MGP_CASTEiJ_G0024729.1 mouse_genomes_project 2 26570896 26584471 - MGP_CASTEiJ_P0053449 Gtf3c4 protein_coding protein_coding MGP_CASTEiJ_T0053450.1 MGP_CASTEiJ_G0024729.1 mouse_genomes_project 2 26579376 26584458 - Gtf3c4 protein_coding processed_transcript MGP_CASTEiJ_T0053451.1 MGP_CASTEiJ_G0024729.1 mouse_genomes_project 2 26579476 26584524 - Gtf3c4 protein_coding processed_transcript MGP_CASTEiJ_T0057165.1 MGP_CASTEiJ_G0025583.1 mouse_genomes_project 2 124071639 124102422 + MGP_CASTEiJ_P0057165 Eif3j1 protein_coding protein_coding MGP_CASTEiJ_T0057166.1 MGP_CASTEiJ_G0025583.1 mouse_genomes_project 2 124071745 124072422 + Eif3j1 protein_coding processed_transcript MGP_CASTEiJ_T0013094.1 MGP_CASTEiJ_G0011257.1 mouse_genomes_project 2 35869418 35869794 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004047.1 MGP_CASTEiJ_G0003585.1 mouse_genomes_project 2 175222102 175236975 - Gm16796 antisense antisense MGP_CASTEiJ_T0053567.1 MGP_CASTEiJ_G0024747.1 mouse_genomes_project 2 27774286 27840396 + MGP_CASTEiJ_P0053567 Sptan1 protein_coding protein_coding MGP_CASTEiJ_T0053568.1 MGP_CASTEiJ_G0024747.1 mouse_genomes_project 2 27774286 27840399 + MGP_CASTEiJ_P0053568 Sptan1 protein_coding protein_coding MGP_CASTEiJ_T0053569.1 MGP_CASTEiJ_G0024747.1 mouse_genomes_project 2 27774403 27802457 + Sptan1 protein_coding retained_intron MGP_CASTEiJ_T0053570.1 MGP_CASTEiJ_G0024747.1 mouse_genomes_project 2 27774405 27775883 + Sptan1 protein_coding retained_intron MGP_CASTEiJ_T0053571.1 MGP_CASTEiJ_G0024747.1 mouse_genomes_project 2 27774406 27840393 + MGP_CASTEiJ_P0053571 Sptan1 protein_coding protein_coding MGP_CASTEiJ_T0053572.1 MGP_CASTEiJ_G0024747.1 mouse_genomes_project 2 27774406 27840399 + MGP_CASTEiJ_P0053572 Sptan1 protein_coding protein_coding MGP_CASTEiJ_T0053573.1 MGP_CASTEiJ_G0024747.1 mouse_genomes_project 2 27774406 27792155 + MGP_CASTEiJ_P0053573 Sptan1 protein_coding protein_coding MGP_CASTEiJ_T0053574.1 MGP_CASTEiJ_G0024747.1 mouse_genomes_project 2 27774409 27840399 + MGP_CASTEiJ_P0053574 Sptan1 protein_coding protein_coding MGP_CASTEiJ_T0053575.1 MGP_CASTEiJ_G0024747.1 mouse_genomes_project 2 27787073 27840132 + MGP_CASTEiJ_P0053575 Sptan1 protein_coding protein_coding MGP_CASTEiJ_T0053576.1 MGP_CASTEiJ_G0024747.1 mouse_genomes_project 2 27800375 27802450 + Sptan1 protein_coding retained_intron MGP_CASTEiJ_T0053577.1 MGP_CASTEiJ_G0024747.1 mouse_genomes_project 2 27810466 27816691 + Sptan1 protein_coding retained_intron MGP_CASTEiJ_T0053578.1 MGP_CASTEiJ_G0024747.1 mouse_genomes_project 2 27812670 27815241 + Sptan1 protein_coding retained_intron MGP_CASTEiJ_T0053579.1 MGP_CASTEiJ_G0024747.1 mouse_genomes_project 2 27830732 27833922 + Sptan1 protein_coding retained_intron MGP_CASTEiJ_T0053580.1 MGP_CASTEiJ_G0024747.1 mouse_genomes_project 2 27836512 27839465 + Sptan1 protein_coding retained_intron MGP_CASTEiJ_T0053581.1 MGP_CASTEiJ_G0024747.1 mouse_genomes_project 2 27836545 27839449 + Sptan1 protein_coding retained_intron MGP_CASTEiJ_T0053582.1 MGP_CASTEiJ_G0024747.1 mouse_genomes_project 2 27839256 27840123 + Sptan1 protein_coding retained_intron MGP_CASTEiJ_T0010109.1 MGP_CASTEiJ_G0008297.1 mouse_genomes_project 2 27252781 27252861 - Mir133c miRNA miRNA MGP_CASTEiJ_T0013314.1 MGP_CASTEiJ_G0011477.1 mouse_genomes_project 2 120279249 120280114 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010072.1 MGP_CASTEiJ_G0008260.1 mouse_genomes_project 2 7745235 7745337 + Gm24342 miRNA miRNA MGP_CASTEiJ_T0053503.1 MGP_CASTEiJ_G0024738.1 mouse_genomes_project 2 27549774 27554719 + Gm13547 protein_coding processed_transcript MGP_CASTEiJ_T0053505.1 MGP_CASTEiJ_G0024738.1 mouse_genomes_project 2 27552828 27554906 + MGP_CASTEiJ_P0053505 Gm13547 protein_coding protein_coding MGP_CASTEiJ_T0013408.1 MGP_CASTEiJ_G0011571.1 mouse_genomes_project 2 159044220 159045611 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013286.1 MGP_CASTEiJ_G0011449.1 mouse_genomes_project 2 107348119 107348275 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001020.1 MGP_CASTEiJ_G0000956.1 mouse_genomes_project 2 33501709 33503329 + TEC TEC MGP_CASTEiJ_T0099620.1 MGP_CASTEiJ_G0036533.1 mouse_genomes_project 2 8346977 8347110 - Gm26478 snRNA snRNA MGP_CASTEiJ_T0013149.1 MGP_CASTEiJ_G0011312.1 mouse_genomes_project 2 57712342 57713074 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007043.1 MGP_CASTEiJ_G0005791.1 mouse_genomes_project 2 73703852 73711695 + Gm10822 lincRNA lincRNA MGP_CASTEiJ_T0013332.1 MGP_CASTEiJ_G0011495.1 mouse_genomes_project 2 130898630 130899611 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013394.1 MGP_CASTEiJ_G0011557.1 mouse_genomes_project 2 154147168 154147525 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013210.1 MGP_CASTEiJ_G0011373.1 mouse_genomes_project 2 82343648 82344282 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057293.1 MGP_CASTEiJ_G0025616.1 mouse_genomes_project 2 128218676 128383526 - MGP_CASTEiJ_P0057293 Fam227b protein_coding protein_coding MGP_CASTEiJ_T0057294.1 MGP_CASTEiJ_G0025616.1 mouse_genomes_project 2 128218821 128383506 - MGP_CASTEiJ_P0057294 Fam227b protein_coding protein_coding MGP_CASTEiJ_T0057295.1 MGP_CASTEiJ_G0025616.1 mouse_genomes_project 2 128218821 128377225 - MGP_CASTEiJ_P0057295 Fam227b protein_coding protein_coding MGP_CASTEiJ_T0057296.1 MGP_CASTEiJ_G0025616.1 mouse_genomes_project 2 128232422 128383526 - Fam227b protein_coding retained_intron MGP_CASTEiJ_T0052192.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 989611 1152352 + Frmd4a protein_coding processed_transcript MGP_CASTEiJ_T0052193.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 989628 993828 + Frmd4a protein_coding retained_intron MGP_CASTEiJ_T0052194.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 989638 1612508 + MGP_CASTEiJ_P0052194 Frmd4a protein_coding protein_coding MGP_CASTEiJ_T0052195.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 1135813 1156773 + Frmd4a protein_coding processed_transcript MGP_CASTEiJ_T0052196.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 1135822 1612409 + MGP_CASTEiJ_P0052196 Frmd4a protein_coding protein_coding MGP_CASTEiJ_T0052197.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 1280581 1568630 + MGP_CASTEiJ_P0052197 Frmd4a protein_coding protein_coding MGP_CASTEiJ_T0052198.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 1280942 1533021 + Frmd4a protein_coding retained_intron MGP_CASTEiJ_T0052199.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 1281060 1554296 + MGP_CASTEiJ_P0052199 Frmd4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052200.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 1307957 1590776 + MGP_CASTEiJ_P0052200 Frmd4a protein_coding protein_coding MGP_CASTEiJ_T0052201.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 1367620 1523963 + MGP_CASTEiJ_P0052201 Frmd4a protein_coding protein_coding MGP_CASTEiJ_T0052202.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 1367622 1415881 + Frmd4a protein_coding retained_intron MGP_CASTEiJ_T0052203.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 1381462 1612510 + MGP_CASTEiJ_P0052203 Frmd4a protein_coding protein_coding MGP_CASTEiJ_T0052204.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 1381924 1413735 + Frmd4a protein_coding retained_intron MGP_CASTEiJ_T0052205.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 1381958 1531862 + Frmd4a protein_coding retained_intron MGP_CASTEiJ_T0052206.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 1462397 1487989 + Frmd4a protein_coding retained_intron MGP_CASTEiJ_T0052207.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 1553785 1595271 + Frmd4a protein_coding retained_intron MGP_CASTEiJ_T0052208.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 1553787 1611052 + MGP_CASTEiJ_P0052208 Frmd4a protein_coding protein_coding MGP_CASTEiJ_T0052209.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 1553806 1584331 + Frmd4a protein_coding retained_intron MGP_CASTEiJ_T0052210.1 MGP_CASTEiJ_G0024509.1 mouse_genomes_project 2 1560381 1590812 + MGP_CASTEiJ_P0052210 Frmd4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0099630.1 MGP_CASTEiJ_G0036543.1 mouse_genomes_project 2 33122152 33122256 + Gm24905 snRNA snRNA MGP_CASTEiJ_T0059334.1 MGP_CASTEiJ_G0026086.1 mouse_genomes_project 2 171570682 171622656 - MGP_CASTEiJ_P0059334 Ptgis protein_coding protein_coding MGP_CASTEiJ_T0059335.1 MGP_CASTEiJ_G0026086.1 mouse_genomes_project 2 171581228 171622671 - MGP_CASTEiJ_P0059335 Ptgis protein_coding protein_coding MGP_CASTEiJ_T0059336.1 MGP_CASTEiJ_G0026086.1 mouse_genomes_project 2 171584844 171586739 - Ptgis protein_coding retained_intron MGP_CASTEiJ_T0059826.1 MGP_CASTEiJ_G0026200.1 mouse_genomes_project 2 184368265 184370040 + MGP_CASTEiJ_P0059826 Abhd16b protein_coding protein_coding MGP_CASTEiJ_T0017140.1 MGP_CASTEiJ_G0014794.1 mouse_genomes_project 2 156715600 156720245 - 2500004C02Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017141.1 MGP_CASTEiJ_G0014794.1 mouse_genomes_project 2 156716956 156717662 - 2500004C02Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017142.1 MGP_CASTEiJ_G0014794.1 mouse_genomes_project 2 156717076 156720508 - 2500004C02Rik processed_transcript processed_transcript MGP_CASTEiJ_T0059092.1 MGP_CASTEiJ_G0026038.1 mouse_genomes_project 2 168795089 168801158 - MGP_CASTEiJ_P0059092 Wfdc16 protein_coding protein_coding MGP_CASTEiJ_T0052984.1 MGP_CASTEiJ_G0024640.1 mouse_genomes_project 2 22941798 22947251 + MGP_CASTEiJ_P0052984 Entpd2 protein_coding protein_coding MGP_CASTEiJ_T0052985.1 MGP_CASTEiJ_G0024640.1 mouse_genomes_project 2 22941840 22947222 + Entpd2 protein_coding processed_transcript MGP_CASTEiJ_T0052986.1 MGP_CASTEiJ_G0024640.1 mouse_genomes_project 2 22944674 22945773 + Entpd2 protein_coding processed_transcript MGP_CASTEiJ_T0003964.1 MGP_CASTEiJ_G0003522.1 mouse_genomes_project 2 134703354 134784578 + Gm14051 antisense antisense MGP_CASTEiJ_T0010134.1 MGP_CASTEiJ_G0008322.1 mouse_genomes_project 2 60849290 60849374 - Gm22403 miRNA miRNA MGP_CASTEiJ_T0058787.1 MGP_CASTEiJ_G0025961.1 mouse_genomes_project 2 161174508 161234593 + MGP_CASTEiJ_P0058787 Src protein_coding protein_coding MGP_CASTEiJ_T0058788.1 MGP_CASTEiJ_G0025961.1 mouse_genomes_project 2 161182237 161218459 + Src protein_coding processed_transcript MGP_CASTEiJ_T0058789.1 MGP_CASTEiJ_G0025961.1 mouse_genomes_project 2 161182401 161234620 + MGP_CASTEiJ_P0058789 Src protein_coding protein_coding MGP_CASTEiJ_T0058790.1 MGP_CASTEiJ_G0025961.1 mouse_genomes_project 2 161182513 161221343 + Src protein_coding processed_transcript MGP_CASTEiJ_T0058791.1 MGP_CASTEiJ_G0025961.1 mouse_genomes_project 2 161182513 161218358 + Src protein_coding processed_transcript MGP_CASTEiJ_T0058792.1 MGP_CASTEiJ_G0025961.1 mouse_genomes_project 2 161182974 161234603 + MGP_CASTEiJ_P0058792 Src protein_coding unknown_likely_coding MGP_CASTEiJ_T0058793.1 MGP_CASTEiJ_G0025961.1 mouse_genomes_project 2 161218422 161234596 + MGP_CASTEiJ_P0058793 Src protein_coding protein_coding MGP_CASTEiJ_T0013249.1 MGP_CASTEiJ_G0011412.1 mouse_genomes_project 2 93283997 93284678 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053006.1 MGP_CASTEiJ_G0024643.1 mouse_genomes_project 2 22978514 22998409 + MGP_CASTEiJ_P0053006 Abca2 protein_coding protein_coding MGP_CASTEiJ_T0053007.1 MGP_CASTEiJ_G0024643.1 mouse_genomes_project 2 22991162 22992772 + Abca2 protein_coding processed_transcript MGP_CASTEiJ_T0053008.1 MGP_CASTEiJ_G0024643.1 mouse_genomes_project 2 22992802 22993668 + Abca2 protein_coding processed_transcript MGP_CASTEiJ_T0053009.1 MGP_CASTEiJ_G0024643.1 mouse_genomes_project 2 22995016 22996734 + Abca2 protein_coding processed_transcript MGP_CASTEiJ_T0053010.1 MGP_CASTEiJ_G0024643.1 mouse_genomes_project 2 22995533 22996936 + Abca2 protein_coding processed_transcript MGP_CASTEiJ_T0053011.1 MGP_CASTEiJ_G0024643.1 mouse_genomes_project 2 22995690 22996411 + Abca2 protein_coding processed_transcript MGP_CASTEiJ_T0053012.1 MGP_CASTEiJ_G0024643.1 mouse_genomes_project 2 22995711 22996345 + Abca2 protein_coding processed_transcript MGP_CASTEiJ_T0003978.1 MGP_CASTEiJ_G0003530.1 mouse_genomes_project 2 144165784 144171737 - Macrod2os2 antisense antisense MGP_CASTEiJ_T0003980.1 MGP_CASTEiJ_G0003530.1 mouse_genomes_project 2 144168088 144168475 - Macrod2os2 antisense antisense MGP_CASTEiJ_T0055694.1 MGP_CASTEiJ_G0025195.1 mouse_genomes_project 2 87970907 87971864 + MGP_CASTEiJ_P0055694 Olfr1124 protein_coding protein_coding MGP_CASTEiJ_T0013219.1 MGP_CASTEiJ_G0011382.1 mouse_genomes_project 2 84281463 84281834 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055886.1 MGP_CASTEiJ_G0025320.1 mouse_genomes_project 2 91733992 91738660 + MGP_CASTEiJ_P0055886 C1qtnf4 protein_coding protein_coding MGP_CASTEiJ_T0013072.1 MGP_CASTEiJ_G0011235.1 mouse_genomes_project 2 24665732 24666609 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004039.1 MGP_CASTEiJ_G0003577.1 mouse_genomes_project 2 169666640 169674926 + Gm14437 antisense antisense MGP_CASTEiJ_T0098374.1 MGP_CASTEiJ_G0035305.1 mouse_genomes_project 2 112041610 112041819 - pseudogene pseudogene MGP_CASTEiJ_T0059920.1 MGP_CASTEiJ_G0026213.1 mouse_genomes_project 2 184740132 184759511 + MGP_CASTEiJ_P0059920 Pcmtd2 protein_coding protein_coding MGP_CASTEiJ_T0059921.1 MGP_CASTEiJ_G0026213.1 mouse_genomes_project 2 184740191 184759496 + MGP_CASTEiJ_P0059921 Pcmtd2 protein_coding protein_coding MGP_CASTEiJ_T0059922.1 MGP_CASTEiJ_G0026213.1 mouse_genomes_project 2 184743113 184748942 + MGP_CASTEiJ_P0059922 Pcmtd2 protein_coding protein_coding MGP_CASTEiJ_T0059923.1 MGP_CASTEiJ_G0026213.1 mouse_genomes_project 2 184744770 184748996 + Pcmtd2 protein_coding retained_intron MGP_CASTEiJ_T0059924.1 MGP_CASTEiJ_G0026213.1 mouse_genomes_project 2 184746782 184757388 + MGP_CASTEiJ_P0059924 Pcmtd2 protein_coding protein_coding MGP_CASTEiJ_T0059925.1 MGP_CASTEiJ_G0026213.1 mouse_genomes_project 2 184753017 184757652 + Pcmtd2 protein_coding processed_transcript MGP_CASTEiJ_T0059926.1 MGP_CASTEiJ_G0026213.1 mouse_genomes_project 2 184753025 184757527 + Pcmtd2 protein_coding processed_transcript MGP_CASTEiJ_T0059927.1 MGP_CASTEiJ_G0026213.1 mouse_genomes_project 2 184753059 184757305 + Pcmtd2 protein_coding processed_transcript MGP_CASTEiJ_T0059928.1 MGP_CASTEiJ_G0026213.1 mouse_genomes_project 2 184753621 184757555 + Pcmtd2 protein_coding retained_intron MGP_CASTEiJ_T0055734.1 MGP_CASTEiJ_G0025225.1 mouse_genomes_project 2 88550904 88553181 - MGP_CASTEiJ_P0055734 Olfr1160 protein_coding protein_coding MGP_CASTEiJ_T0056531.1 MGP_CASTEiJ_G0025434.1 mouse_genomes_project 2 112529375 112552119 - MGP_CASTEiJ_P0056531 Gm13941 protein_coding protein_coding MGP_CASTEiJ_T0057182.1 MGP_CASTEiJ_G0025593.1 mouse_genomes_project 2 124368350 124373008 - MGP_CASTEiJ_P0057182 Duoxa1 protein_coding protein_coding MGP_CASTEiJ_T0057183.1 MGP_CASTEiJ_G0025593.1 mouse_genomes_project 2 124369710 124379884 - MGP_CASTEiJ_P0057183 Duoxa1 protein_coding protein_coding MGP_CASTEiJ_T0057184.1 MGP_CASTEiJ_G0025593.1 mouse_genomes_project 2 124369713 124371873 - Duoxa1 protein_coding processed_transcript MGP_CASTEiJ_T0057185.1 MGP_CASTEiJ_G0025593.1 mouse_genomes_project 2 124369906 124372986 - MGP_CASTEiJ_P0057185 Duoxa1 protein_coding protein_coding MGP_CASTEiJ_T0057186.1 MGP_CASTEiJ_G0025593.1 mouse_genomes_project 2 124370933 124379921 - MGP_CASTEiJ_P0057186 Duoxa1 protein_coding protein_coding MGP_CASTEiJ_T0057187.1 MGP_CASTEiJ_G0025593.1 mouse_genomes_project 2 124371376 124379835 - MGP_CASTEiJ_P0057187 Duoxa1 protein_coding protein_coding MGP_CASTEiJ_T0057188.1 MGP_CASTEiJ_G0025593.1 mouse_genomes_project 2 124371755 124379842 - MGP_CASTEiJ_P0057188 Duoxa1 protein_coding protein_coding MGP_CASTEiJ_T0013085.1 MGP_CASTEiJ_G0011248.1 mouse_genomes_project 2 33731896 33732416 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055692.1 MGP_CASTEiJ_G0025193.1 mouse_genomes_project 2 87926010 87926991 + MGP_CASTEiJ_P0055692 Olfr1122 protein_coding protein_coding MGP_CASTEiJ_T0057090.1 MGP_CASTEiJ_G0025570.1 mouse_genomes_project 2 123320803 123323136 + MGP_CASTEiJ_P0057090 Ckmt1 protein_coding protein_coding MGP_CASTEiJ_T0057091.1 MGP_CASTEiJ_G0025570.1 mouse_genomes_project 2 123320865 123326808 + MGP_CASTEiJ_P0057091 Ckmt1 protein_coding protein_coding MGP_CASTEiJ_T0057092.1 MGP_CASTEiJ_G0025570.1 mouse_genomes_project 2 123320929 123322873 + MGP_CASTEiJ_P0057092 Ckmt1 protein_coding protein_coding MGP_CASTEiJ_T0057093.1 MGP_CASTEiJ_G0025570.1 mouse_genomes_project 2 123320996 123324062 + MGP_CASTEiJ_P0057093 Ckmt1 protein_coding protein_coding MGP_CASTEiJ_T0057094.1 MGP_CASTEiJ_G0025570.1 mouse_genomes_project 2 123321701 123326808 + MGP_CASTEiJ_P0057094 Ckmt1 protein_coding protein_coding MGP_CASTEiJ_T0057095.1 MGP_CASTEiJ_G0025570.1 mouse_genomes_project 2 123321747 123324059 + MGP_CASTEiJ_P0057095 Ckmt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057096.1 MGP_CASTEiJ_G0025570.1 mouse_genomes_project 2 123321750 123323457 + Ckmt1 protein_coding retained_intron MGP_CASTEiJ_T0057097.1 MGP_CASTEiJ_G0025570.1 mouse_genomes_project 2 123321757 123323701 + MGP_CASTEiJ_P0057097 Ckmt1 protein_coding protein_coding MGP_CASTEiJ_T0057098.1 MGP_CASTEiJ_G0025570.1 mouse_genomes_project 2 123321935 123323115 + MGP_CASTEiJ_P0057098 Ckmt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057099.1 MGP_CASTEiJ_G0025570.1 mouse_genomes_project 2 123325992 123326807 + Ckmt1 protein_coding retained_intron MGP_CASTEiJ_T0013369.1 MGP_CASTEiJ_G0011532.1 mouse_genomes_project 2 146366939 146367089 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053724.1 MGP_CASTEiJ_G0024767.1 mouse_genomes_project 2 28326173 28328850 - MGP_CASTEiJ_P0053724 Ier5l protein_coding protein_coding MGP_CASTEiJ_T0003999.1 MGP_CASTEiJ_G0003546.1 mouse_genomes_project 2 155223386 155226751 - Gm14154 antisense antisense MGP_CASTEiJ_T0052794.1 MGP_CASTEiJ_G0024609.1 mouse_genomes_project 2 22288577 22435238 - MGP_CASTEiJ_P0052794 Ehmt1 protein_coding protein_coding MGP_CASTEiJ_T0052795.1 MGP_CASTEiJ_G0024609.1 mouse_genomes_project 2 22289452 22401949 - MGP_CASTEiJ_P0052795 Ehmt1 protein_coding protein_coding MGP_CASTEiJ_T0052796.1 MGP_CASTEiJ_G0024609.1 mouse_genomes_project 2 22289806 22307115 - MGP_CASTEiJ_P0052796 Ehmt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052797.1 MGP_CASTEiJ_G0024609.1 mouse_genomes_project 2 22289806 22435196 - MGP_CASTEiJ_P0052797 Ehmt1 protein_coding protein_coding MGP_CASTEiJ_T0052798.1 MGP_CASTEiJ_G0024609.1 mouse_genomes_project 2 22289806 22435196 - MGP_CASTEiJ_P0052798 Ehmt1 protein_coding protein_coding MGP_CASTEiJ_T0052799.1 MGP_CASTEiJ_G0024609.1 mouse_genomes_project 2 22305992 22328077 - Ehmt1 protein_coding retained_intron MGP_CASTEiJ_T0052800.1 MGP_CASTEiJ_G0024609.1 mouse_genomes_project 2 22307029 22344603 - MGP_CASTEiJ_P0052800 Ehmt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052801.1 MGP_CASTEiJ_G0024609.1 mouse_genomes_project 2 22307087 22308041 - Ehmt1 protein_coding processed_transcript MGP_CASTEiJ_T0052802.1 MGP_CASTEiJ_G0024609.1 mouse_genomes_project 2 22324726 22435212 - MGP_CASTEiJ_P0052802 Ehmt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052803.1 MGP_CASTEiJ_G0024609.1 mouse_genomes_project 2 22327657 22357714 - MGP_CASTEiJ_P0052803 Ehmt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052804.1 MGP_CASTEiJ_G0024609.1 mouse_genomes_project 2 22340147 22435201 - Ehmt1 protein_coding retained_intron MGP_CASTEiJ_T0052805.1 MGP_CASTEiJ_G0024609.1 mouse_genomes_project 2 22353037 22384034 - MGP_CASTEiJ_P0052805 Ehmt1 protein_coding protein_coding MGP_CASTEiJ_T0052806.1 MGP_CASTEiJ_G0024609.1 mouse_genomes_project 2 22368220 22392175 - MGP_CASTEiJ_P0052806 Ehmt1 protein_coding protein_coding MGP_CASTEiJ_T0052807.1 MGP_CASTEiJ_G0024609.1 mouse_genomes_project 2 22368289 22435229 - MGP_CASTEiJ_P0052807 Ehmt1 protein_coding protein_coding MGP_CASTEiJ_T0052808.1 MGP_CASTEiJ_G0024609.1 mouse_genomes_project 2 22368886 22435220 - MGP_CASTEiJ_P0052808 Ehmt1 protein_coding protein_coding MGP_CASTEiJ_T0013217.1 MGP_CASTEiJ_G0011380.1 mouse_genomes_project 2 83811352 83811493 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017007.1 MGP_CASTEiJ_G0014720.1 mouse_genomes_project 2 25714111 25719141 - Gm13372 processed_transcript processed_transcript MGP_CASTEiJ_T0013237.1 MGP_CASTEiJ_G0011400.1 mouse_genomes_project 2 88111418 88112142 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013437.1 MGP_CASTEiJ_G0011600.1 mouse_genomes_project 2 170221520 170222079 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057157.1 MGP_CASTEiJ_G0025582.1 mouse_genomes_project 2 123987583 124048515 + MGP_CASTEiJ_P0057157 Ctdspl2 protein_coding protein_coding MGP_CASTEiJ_T0057158.1 MGP_CASTEiJ_G0025582.1 mouse_genomes_project 2 123987632 124027207 + Ctdspl2 protein_coding retained_intron MGP_CASTEiJ_T0057159.1 MGP_CASTEiJ_G0025582.1 mouse_genomes_project 2 123987652 124053237 + Ctdspl2 protein_coding processed_transcript MGP_CASTEiJ_T0057160.1 MGP_CASTEiJ_G0025582.1 mouse_genomes_project 2 123987658 124026788 + Ctdspl2 protein_coding processed_transcript MGP_CASTEiJ_T0057161.1 MGP_CASTEiJ_G0025582.1 mouse_genomes_project 2 123987658 124023278 + Ctdspl2 protein_coding retained_intron MGP_CASTEiJ_T0057162.1 MGP_CASTEiJ_G0025582.1 mouse_genomes_project 2 123987831 124046839 + MGP_CASTEiJ_P0057162 Ctdspl2 protein_coding protein_coding MGP_CASTEiJ_T0057163.1 MGP_CASTEiJ_G0025582.1 mouse_genomes_project 2 123999914 124054213 + MGP_CASTEiJ_P0057163 Ctdspl2 protein_coding protein_coding MGP_CASTEiJ_T0057164.1 MGP_CASTEiJ_G0025582.1 mouse_genomes_project 2 124010742 124040157 + Ctdspl2 protein_coding retained_intron MGP_CASTEiJ_T0058957.1 MGP_CASTEiJ_G0025994.1 mouse_genomes_project 2 167028308 167067903 + MGP_CASTEiJ_P0058957 Ift52 protein_coding protein_coding MGP_CASTEiJ_T0058958.1 MGP_CASTEiJ_G0025994.1 mouse_genomes_project 2 167028445 167045613 + MGP_CASTEiJ_P0058958 Ift52 protein_coding protein_coding MGP_CASTEiJ_T0058959.1 MGP_CASTEiJ_G0025994.1 mouse_genomes_project 2 167028473 167036481 + Ift52 protein_coding processed_transcript MGP_CASTEiJ_T0058960.1 MGP_CASTEiJ_G0025994.1 mouse_genomes_project 2 167035382 167042845 + Ift52 protein_coding processed_transcript MGP_CASTEiJ_T0052517.1 MGP_CASTEiJ_G0024558.1 mouse_genomes_project 2 11558650 11657980 + MGP_CASTEiJ_P0052517 Mrc1 protein_coding protein_coding MGP_CASTEiJ_T0052518.1 MGP_CASTEiJ_G0024558.1 mouse_genomes_project 2 11654477 11657850 + Mrc1 protein_coding retained_intron MGP_CASTEiJ_T0007210.1 MGP_CASTEiJ_G0005928.1 mouse_genomes_project 2 170809985 170813567 - Gm14267 lincRNA lincRNA MGP_CASTEiJ_T0102221.1 MGP_CASTEiJ_G0038946.1 mouse_genomes_project 2 86340424 86341766 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0007052.1 MGP_CASTEiJ_G0005798.1 mouse_genomes_project 2 74595705 74596781 + Gm14424 lincRNA lincRNA MGP_CASTEiJ_T0010188.1 MGP_CASTEiJ_G0008376.1 mouse_genomes_project 2 159975255 159975351 + Gm26300 miRNA miRNA MGP_CASTEiJ_T0053475.1 MGP_CASTEiJ_G0024735.1 mouse_genomes_project 2 26963679 27020187 - MGP_CASTEiJ_P0053475 Ntng2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053476.1 MGP_CASTEiJ_G0024735.1 mouse_genomes_project 2 26963932 27020161 - MGP_CASTEiJ_P0053476 Ntng2 protein_coding protein_coding MGP_CASTEiJ_T0053477.1 MGP_CASTEiJ_G0024735.1 mouse_genomes_project 2 26963959 27020102 - MGP_CASTEiJ_P0053477 Ntng2 protein_coding protein_coding MGP_CASTEiJ_T0053478.1 MGP_CASTEiJ_G0024735.1 mouse_genomes_project 2 26963959 27020102 - MGP_CASTEiJ_P0053478 Ntng2 protein_coding protein_coding MGP_CASTEiJ_T0053479.1 MGP_CASTEiJ_G0024735.1 mouse_genomes_project 2 26963959 27020102 - MGP_CASTEiJ_P0053479 Ntng2 protein_coding protein_coding MGP_CASTEiJ_T0053480.1 MGP_CASTEiJ_G0024735.1 mouse_genomes_project 2 26967604 26973173 - Ntng2 protein_coding processed_transcript MGP_CASTEiJ_T0053481.1 MGP_CASTEiJ_G0024735.1 mouse_genomes_project 2 26967777 26974071 - Ntng2 protein_coding processed_transcript MGP_CASTEiJ_T0053482.1 MGP_CASTEiJ_G0024735.1 mouse_genomes_project 2 26969708 26973173 - Ntng2 protein_coding processed_transcript MGP_CASTEiJ_T0053483.1 MGP_CASTEiJ_G0024735.1 mouse_genomes_project 2 26969822 26974071 - Ntng2 protein_coding processed_transcript MGP_CASTEiJ_T0053484.1 MGP_CASTEiJ_G0024735.1 mouse_genomes_project 2 26972970 27025059 - MGP_CASTEiJ_P0053484 Ntng2 protein_coding protein_coding MGP_CASTEiJ_T0053485.1 MGP_CASTEiJ_G0024735.1 mouse_genomes_project 2 27002980 27020194 - Ntng2 protein_coding processed_transcript MGP_CASTEiJ_T0054364.1 MGP_CASTEiJ_G0024875.1 mouse_genomes_project 2 35085935 35086871 - MGP_CASTEiJ_P0054364 Olfr353 protein_coding protein_coding MGP_CASTEiJ_T0055391.1 MGP_CASTEiJ_G0025068.1 mouse_genomes_project 2 77925902 77932696 - MGP_CASTEiJ_P0055391 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055392.1 MGP_CASTEiJ_G0025068.1 mouse_genomes_project 2 77931621 77935038 - protein_coding processed_transcript MGP_CASTEiJ_T0055393.1 MGP_CASTEiJ_G0025068.1 mouse_genomes_project 2 77933064 77951799 - MGP_CASTEiJ_P0055393 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055394.1 MGP_CASTEiJ_G0025068.1 mouse_genomes_project 2 77933721 77951771 - MGP_CASTEiJ_P0055394 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055395.1 MGP_CASTEiJ_G0025068.1 mouse_genomes_project 2 77945202 77997823 - protein_coding processed_transcript MGP_CASTEiJ_T0055396.1 MGP_CASTEiJ_G0025068.1 mouse_genomes_project 2 77960894 77997807 - protein_coding processed_transcript MGP_CASTEiJ_T0055397.1 MGP_CASTEiJ_G0025068.1 mouse_genomes_project 2 77967661 77997562 - MGP_CASTEiJ_P0055397 protein_coding protein_coding MGP_CASTEiJ_T0055398.1 MGP_CASTEiJ_G0025068.1 mouse_genomes_project 2 77967747 77997813 - MGP_CASTEiJ_P0055398 protein_coding protein_coding MGP_CASTEiJ_T0055399.1 MGP_CASTEiJ_G0025068.1 mouse_genomes_project 2 77967806 77976775 - protein_coding processed_transcript MGP_CASTEiJ_T0055400.1 MGP_CASTEiJ_G0025068.1 mouse_genomes_project 2 77969138 77976833 - protein_coding processed_transcript MGP_CASTEiJ_T0053893.1 MGP_CASTEiJ_G0024794.1 mouse_genomes_project 2 30158158 30248040 + MGP_CASTEiJ_P0053893 Prrc2b protein_coding protein_coding MGP_CASTEiJ_T0053894.1 MGP_CASTEiJ_G0024794.1 mouse_genomes_project 2 30159792 30248025 + MGP_CASTEiJ_P0053894 Prrc2b protein_coding protein_coding MGP_CASTEiJ_T0053895.1 MGP_CASTEiJ_G0024794.1 mouse_genomes_project 2 30192079 30244680 + MGP_CASTEiJ_P0053895 Prrc2b protein_coding protein_coding MGP_CASTEiJ_T0053896.1 MGP_CASTEiJ_G0024794.1 mouse_genomes_project 2 30218264 30231542 + Prrc2b protein_coding processed_transcript MGP_CASTEiJ_T0053897.1 MGP_CASTEiJ_G0024794.1 mouse_genomes_project 2 30224088 30231201 + MGP_CASTEiJ_P0053897 Prrc2b protein_coding protein_coding MGP_CASTEiJ_T0053898.1 MGP_CASTEiJ_G0024794.1 mouse_genomes_project 2 30227968 30231496 + MGP_CASTEiJ_P0053898 Prrc2b protein_coding protein_coding MGP_CASTEiJ_T0053899.1 MGP_CASTEiJ_G0024794.1 mouse_genomes_project 2 30229095 30231040 + Prrc2b protein_coding processed_transcript MGP_CASTEiJ_T0053900.1 MGP_CASTEiJ_G0024794.1 mouse_genomes_project 2 30229163 30233255 + Prrc2b protein_coding processed_transcript MGP_CASTEiJ_T0053901.1 MGP_CASTEiJ_G0024794.1 mouse_genomes_project 2 30231413 30234207 + Prrc2b protein_coding processed_transcript MGP_CASTEiJ_T0053902.1 MGP_CASTEiJ_G0024794.1 mouse_genomes_project 2 30231651 30233323 + Prrc2b protein_coding processed_transcript MGP_CASTEiJ_T0055844.1 MGP_CASTEiJ_G0025311.1 mouse_genomes_project 2 90969969 90970884 - MGP_CASTEiJ_P0055844 Olfr1270 protein_coding protein_coding MGP_CASTEiJ_T0058144.1 MGP_CASTEiJ_G0025816.1 mouse_genomes_project 2 154248364 154268219 - MGP_CASTEiJ_P0058144 protein_coding protein_coding MGP_CASTEiJ_T0055713.1 MGP_CASTEiJ_G0025205.1 mouse_genomes_project 2 88174826 88175756 + MGP_CASTEiJ_P0055713 protein_coding protein_coding MGP_CASTEiJ_T0054862.1 MGP_CASTEiJ_G0024966.1 mouse_genomes_project 2 61560946 61571182 - MGP_CASTEiJ_P0054862 Gcg protein_coding protein_coding MGP_CASTEiJ_T0054863.1 MGP_CASTEiJ_G0024966.1 mouse_genomes_project 2 61562170 61571177 - MGP_CASTEiJ_P0054863 Gcg protein_coding protein_coding MGP_CASTEiJ_T0054864.1 MGP_CASTEiJ_G0024966.1 mouse_genomes_project 2 61563008 61567115 - Gcg protein_coding processed_transcript MGP_CASTEiJ_T0053182.1 MGP_CASTEiJ_G0024682.1 mouse_genomes_project 2 23973792 23991641 - MGP_CASTEiJ_P0053182 Snapc4 protein_coding protein_coding MGP_CASTEiJ_T0053183.1 MGP_CASTEiJ_G0024682.1 mouse_genomes_project 2 23973794 23976052 - Snapc4 protein_coding processed_transcript MGP_CASTEiJ_T0053184.1 MGP_CASTEiJ_G0024682.1 mouse_genomes_project 2 23973801 23991645 - MGP_CASTEiJ_P0053184 Snapc4 protein_coding protein_coding MGP_CASTEiJ_T0053185.1 MGP_CASTEiJ_G0024682.1 mouse_genomes_project 2 23973803 23991624 - Snapc4 protein_coding processed_transcript MGP_CASTEiJ_T0053186.1 MGP_CASTEiJ_G0024682.1 mouse_genomes_project 2 23977641 23978798 - Snapc4 protein_coding processed_transcript MGP_CASTEiJ_T0053187.1 MGP_CASTEiJ_G0024682.1 mouse_genomes_project 2 23980484 23984698 - MGP_CASTEiJ_P0053187 Snapc4 protein_coding protein_coding MGP_CASTEiJ_T0053188.1 MGP_CASTEiJ_G0024682.1 mouse_genomes_project 2 23980513 23984678 - Snapc4 protein_coding processed_transcript MGP_CASTEiJ_T0053189.1 MGP_CASTEiJ_G0024682.1 mouse_genomes_project 2 23980534 23982172 - Snapc4 protein_coding processed_transcript MGP_CASTEiJ_T0053190.1 MGP_CASTEiJ_G0024682.1 mouse_genomes_project 2 23981011 23985195 - Snapc4 protein_coding processed_transcript MGP_CASTEiJ_T0053191.1 MGP_CASTEiJ_G0024682.1 mouse_genomes_project 2 23981860 23991627 - Snapc4 protein_coding processed_transcript MGP_CASTEiJ_T0053192.1 MGP_CASTEiJ_G0024682.1 mouse_genomes_project 2 23981860 23984422 - Snapc4 protein_coding processed_transcript MGP_CASTEiJ_T0053193.1 MGP_CASTEiJ_G0024682.1 mouse_genomes_project 2 23984628 23985805 - Snapc4 protein_coding processed_transcript MGP_CASTEiJ_T0053194.1 MGP_CASTEiJ_G0024682.1 mouse_genomes_project 2 23988705 23991645 - Snapc4 protein_coding processed_transcript MGP_CASTEiJ_T0053195.1 MGP_CASTEiJ_G0024682.1 mouse_genomes_project 2 23989410 23991618 - Snapc4 protein_coding processed_transcript MGP_CASTEiJ_T0056377.1 MGP_CASTEiJ_G0025397.1 mouse_genomes_project 2 105268811 105270396 + MGP_CASTEiJ_P0056377 protein_coding protein_coding MGP_CASTEiJ_T0001002.1 MGP_CASTEiJ_G0000938.1 mouse_genomes_project 2 11367555 11370138 - TEC TEC MGP_CASTEiJ_T0011194.1 MGP_CASTEiJ_G0009382.1 mouse_genomes_project 2 171424719 171424908 + Gm27494 misc_RNA misc_RNA MGP_CASTEiJ_T0098575.1 MGP_CASTEiJ_G0035506.1 mouse_genomes_project 2 107328679 107328795 + n-R5s201 rRNA rRNA MGP_CASTEiJ_T0013310.1 MGP_CASTEiJ_G0011473.1 mouse_genomes_project 2 116289887 116290669 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007183.1 MGP_CASTEiJ_G0005904.1 mouse_genomes_project 2 160240712 160247623 + Gm14168 lincRNA lincRNA MGP_CASTEiJ_T0055685.1 MGP_CASTEiJ_G0025186.1 mouse_genomes_project 2 87671745 87672684 - MGP_CASTEiJ_P0055685 Olfr1111 protein_coding protein_coding MGP_CASTEiJ_T0056657.1 MGP_CASTEiJ_G0025490.1 mouse_genomes_project 2 118843946 118913751 + MGP_CASTEiJ_P0056657 Spred1 protein_coding protein_coding MGP_CASTEiJ_T0056658.1 MGP_CASTEiJ_G0025490.1 mouse_genomes_project 2 118844210 118904403 + MGP_CASTEiJ_P0056658 Spred1 protein_coding protein_coding MGP_CASTEiJ_T0013357.1 MGP_CASTEiJ_G0011520.1 mouse_genomes_project 2 139149759 139150462 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010063.1 MGP_CASTEiJ_G0008251.1 mouse_genomes_project 2 7726988 7727084 + Mir466f-3 miRNA miRNA MGP_CASTEiJ_T0001057.1 MGP_CASTEiJ_G0000992.1 mouse_genomes_project 2 174603717 174604892 - TEC TEC MGP_CASTEiJ_T0001058.1 MGP_CASTEiJ_G0000992.1 mouse_genomes_project 2 174603830 174604692 - TEC TEC MGP_CASTEiJ_T0004063.1 MGP_CASTEiJ_G0003595.1 mouse_genomes_project 2 183135507 183143571 + Gata5os antisense antisense MGP_CASTEiJ_T0056788.1 MGP_CASTEiJ_G0025521.1 mouse_genomes_project 2 121102505 121104577 - MGP_CASTEiJ_P0056788 Rhov protein_coding protein_coding MGP_CASTEiJ_T0010083.1 MGP_CASTEiJ_G0008271.1 mouse_genomes_project 2 7752609 7752689 + Mir466g miRNA miRNA MGP_CASTEiJ_T0055745.1 MGP_CASTEiJ_G0025235.1 mouse_genomes_project 2 88754492 88755912 + MGP_CASTEiJ_P0055745 Olfr1173 protein_coding protein_coding MGP_CASTEiJ_T0058388.1 MGP_CASTEiJ_G0025891.1 mouse_genomes_project 2 157811972 157815568 - protein_coding processed_transcript MGP_CASTEiJ_T0058389.1 MGP_CASTEiJ_G0025891.1 mouse_genomes_project 2 157811972 157826889 - MGP_CASTEiJ_P0058389 protein_coding protein_coding MGP_CASTEiJ_T0058390.1 MGP_CASTEiJ_G0025891.1 mouse_genomes_project 2 157815119 157826889 - protein_coding retained_intron MGP_CASTEiJ_T0055512.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84850922 84911586 - MGP_CASTEiJ_P0055512 protein_coding protein_coding MGP_CASTEiJ_T0055513.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84850922 84911586 - MGP_CASTEiJ_P0055513 protein_coding protein_coding MGP_CASTEiJ_T0055514.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84850922 84911586 - MGP_CASTEiJ_P0055514 protein_coding protein_coding MGP_CASTEiJ_T0055515.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84850922 84911586 - MGP_CASTEiJ_P0055515 protein_coding protein_coding MGP_CASTEiJ_T0055516.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84850924 84911517 - MGP_CASTEiJ_P0055516 protein_coding protein_coding MGP_CASTEiJ_T0055517.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84850924 84911586 - MGP_CASTEiJ_P0055517 protein_coding protein_coding MGP_CASTEiJ_T0055518.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84850924 84911586 - MGP_CASTEiJ_P0055518 protein_coding protein_coding MGP_CASTEiJ_T0055519.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84851632 84911581 - MGP_CASTEiJ_P0055519 protein_coding protein_coding MGP_CASTEiJ_T0055520.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84851634 84911383 - protein_coding processed_transcript MGP_CASTEiJ_T0055521.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84851634 84911353 - MGP_CASTEiJ_P0055521 protein_coding protein_coding MGP_CASTEiJ_T0055522.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84851634 84911606 - MGP_CASTEiJ_P0055522 protein_coding protein_coding MGP_CASTEiJ_T0055523.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84851634 84910292 - MGP_CASTEiJ_P0055523 protein_coding protein_coding MGP_CASTEiJ_T0055525.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84855808 84867891 - protein_coding processed_transcript MGP_CASTEiJ_T0055526.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84855904 84867911 - protein_coding processed_transcript MGP_CASTEiJ_T0055527.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84856167 84911595 - MGP_CASTEiJ_P0055527 protein_coding protein_coding MGP_CASTEiJ_T0055528.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84867200 84870813 - protein_coding processed_transcript MGP_CASTEiJ_T0055529.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84883678 84897388 - protein_coding processed_transcript MGP_CASTEiJ_T0055530.1 MGP_CASTEiJ_G0025091.1 mouse_genomes_project 2 84883717 84909349 - protein_coding processed_transcript MGP_CASTEiJ_T0004042.1 MGP_CASTEiJ_G0003580.1 mouse_genomes_project 2 171579897 171581121 + Gm14291 antisense antisense MGP_CASTEiJ_T0059467.1 MGP_CASTEiJ_G0026119.1 mouse_genomes_project 2 177242768 177248180 + MGP_CASTEiJ_P0059467 Cstf1 protein_coding protein_coding MGP_CASTEiJ_T0059468.1 MGP_CASTEiJ_G0026119.1 mouse_genomes_project 2 177242821 177256678 + MGP_CASTEiJ_P0059468 Cstf1 protein_coding protein_coding MGP_CASTEiJ_T0013243.1 MGP_CASTEiJ_G0011406.1 mouse_genomes_project 2 91888799 91889144 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003890.1 MGP_CASTEiJ_G0003472.1 mouse_genomes_project 2 73462201 73464182 + Chn1os1 antisense antisense MGP_CASTEiJ_T0053360.1 MGP_CASTEiJ_G0024711.1 mouse_genomes_project 2 25086652 25117106 - MGP_CASTEiJ_P0053360 Brd3 protein_coding protein_coding MGP_CASTEiJ_T0053361.1 MGP_CASTEiJ_G0024711.1 mouse_genomes_project 2 25086652 25116812 - MGP_CASTEiJ_P0053361 Brd3 protein_coding protein_coding MGP_CASTEiJ_T0053362.1 MGP_CASTEiJ_G0024711.1 mouse_genomes_project 2 25086673 25117093 - MGP_CASTEiJ_P0053362 Brd3 protein_coding protein_coding MGP_CASTEiJ_T0053363.1 MGP_CASTEiJ_G0024711.1 mouse_genomes_project 2 25089366 25105583 - MGP_CASTEiJ_P0053363 Brd3 protein_coding protein_coding MGP_CASTEiJ_T0053364.1 MGP_CASTEiJ_G0024711.1 mouse_genomes_project 2 25090772 25117074 - MGP_CASTEiJ_P0053364 Brd3 protein_coding protein_coding MGP_CASTEiJ_T0053365.1 MGP_CASTEiJ_G0024711.1 mouse_genomes_project 2 25090772 25153986 - MGP_CASTEiJ_P0053365 Brd3 protein_coding protein_coding MGP_CASTEiJ_T0053366.1 MGP_CASTEiJ_G0024711.1 mouse_genomes_project 2 25094443 25117073 - Brd3 protein_coding processed_transcript MGP_CASTEiJ_T0053367.1 MGP_CASTEiJ_G0024711.1 mouse_genomes_project 2 25104997 25117027 - MGP_CASTEiJ_P0053367 Brd3 protein_coding protein_coding MGP_CASTEiJ_T0053368.1 MGP_CASTEiJ_G0024711.1 mouse_genomes_project 2 25105358 25106049 - Brd3 protein_coding processed_transcript MGP_CASTEiJ_T0053369.1 MGP_CASTEiJ_G0024711.1 mouse_genomes_project 2 25105465 25116595 - Brd3 protein_coding processed_transcript MGP_CASTEiJ_T0102238.1 MGP_CASTEiJ_G0038963.1 mouse_genomes_project 2 88387209 88387654 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010123.1 MGP_CASTEiJ_G0008311.1 mouse_genomes_project 2 30769628 30769710 - Mir2861 miRNA miRNA MGP_CASTEiJ_T0004040.1 MGP_CASTEiJ_G0003578.1 mouse_genomes_project 2 170131226 170133249 + Gm11465 antisense antisense MGP_CASTEiJ_T0013197.1 MGP_CASTEiJ_G0011360.1 mouse_genomes_project 2 78014286 78015073 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055304.1 MGP_CASTEiJ_G0025054.1 mouse_genomes_project 2 75731662 75838079 + MGP_CASTEiJ_P0055304 Agps protein_coding protein_coding MGP_CASTEiJ_T0055305.1 MGP_CASTEiJ_G0025054.1 mouse_genomes_project 2 75731674 75800237 + MGP_CASTEiJ_P0055305 Agps protein_coding protein_coding MGP_CASTEiJ_T0055306.1 MGP_CASTEiJ_G0025054.1 mouse_genomes_project 2 75731704 75799308 + MGP_CASTEiJ_P0055306 Agps protein_coding unknown_likely_coding MGP_CASTEiJ_T0055307.1 MGP_CASTEiJ_G0025054.1 mouse_genomes_project 2 75731990 75831982 + MGP_CASTEiJ_P0055307 Agps protein_coding protein_coding MGP_CASTEiJ_T0055308.1 MGP_CASTEiJ_G0025054.1 mouse_genomes_project 2 75771927 75782742 + MGP_CASTEiJ_P0055308 Agps protein_coding protein_coding MGP_CASTEiJ_T0055309.1 MGP_CASTEiJ_G0025054.1 mouse_genomes_project 2 75777541 75796807 + Agps protein_coding processed_transcript MGP_CASTEiJ_T0055310.1 MGP_CASTEiJ_G0025054.1 mouse_genomes_project 2 75799137 75832052 + MGP_CASTEiJ_P0055310 Agps protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055311.1 MGP_CASTEiJ_G0025054.1 mouse_genomes_project 2 75814244 75816742 + Agps protein_coding retained_intron MGP_CASTEiJ_T0007066.1 MGP_CASTEiJ_G0005810.1 mouse_genomes_project 2 82625113 82642740 - A130030D18Rik lincRNA lincRNA MGP_CASTEiJ_T0057664.1 MGP_CASTEiJ_G0025702.1 mouse_genomes_project 2 133629349 133630074 + MGP_CASTEiJ_P0057664 Gm11037 protein_coding protein_coding MGP_CASTEiJ_T0102224.1 MGP_CASTEiJ_G0038949.1 mouse_genomes_project 2 86674487 86675438 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0052706.1 MGP_CASTEiJ_G0024591.1 mouse_genomes_project 2 20375696 20480055 - MGP_CASTEiJ_P0052706 Abi1 protein_coding protein_coding MGP_CASTEiJ_T0052707.1 MGP_CASTEiJ_G0024591.1 mouse_genomes_project 2 20375696 20480101 - MGP_CASTEiJ_P0052707 Abi1 protein_coding protein_coding MGP_CASTEiJ_T0052708.1 MGP_CASTEiJ_G0024591.1 mouse_genomes_project 2 20375709 20480101 - MGP_CASTEiJ_P0052708 Abi1 protein_coding protein_coding MGP_CASTEiJ_T0052709.1 MGP_CASTEiJ_G0024591.1 mouse_genomes_project 2 20375931 20479982 - MGP_CASTEiJ_P0052709 Abi1 protein_coding protein_coding MGP_CASTEiJ_T0052710.1 MGP_CASTEiJ_G0024591.1 mouse_genomes_project 2 20375987 20479964 - MGP_CASTEiJ_P0052710 Abi1 protein_coding protein_coding MGP_CASTEiJ_T0052711.1 MGP_CASTEiJ_G0024591.1 mouse_genomes_project 2 20375987 20480047 - MGP_CASTEiJ_P0052711 Abi1 protein_coding protein_coding MGP_CASTEiJ_T0052712.1 MGP_CASTEiJ_G0024591.1 mouse_genomes_project 2 20375987 20479997 - MGP_CASTEiJ_P0052712 Abi1 protein_coding protein_coding MGP_CASTEiJ_T0052713.1 MGP_CASTEiJ_G0024591.1 mouse_genomes_project 2 20375992 20480090 - MGP_CASTEiJ_P0052713 Abi1 protein_coding protein_coding MGP_CASTEiJ_T0052714.1 MGP_CASTEiJ_G0024591.1 mouse_genomes_project 2 20375992 20480045 - MGP_CASTEiJ_P0052714 Abi1 protein_coding protein_coding MGP_CASTEiJ_T0052715.1 MGP_CASTEiJ_G0024591.1 mouse_genomes_project 2 20376515 20480000 - MGP_CASTEiJ_P0052715 Abi1 protein_coding protein_coding MGP_CASTEiJ_T0052716.1 MGP_CASTEiJ_G0024591.1 mouse_genomes_project 2 20376856 20480079 - MGP_CASTEiJ_P0052716 Abi1 protein_coding protein_coding MGP_CASTEiJ_T0052717.1 MGP_CASTEiJ_G0024591.1 mouse_genomes_project 2 20377432 20383671 - Abi1 protein_coding retained_intron MGP_CASTEiJ_T0052718.1 MGP_CASTEiJ_G0024591.1 mouse_genomes_project 2 20377436 20386954 - Abi1 protein_coding retained_intron MGP_CASTEiJ_T0052719.1 MGP_CASTEiJ_G0024591.1 mouse_genomes_project 2 20383146 20400883 - Abi1 protein_coding retained_intron MGP_CASTEiJ_T0052720.1 MGP_CASTEiJ_G0024591.1 mouse_genomes_project 2 20386877 20402623 - Abi1 protein_coding retained_intron MGP_CASTEiJ_T0056279.1 MGP_CASTEiJ_G0025383.1 mouse_genomes_project 2 103694483 103785304 + MGP_CASTEiJ_P0056279 Pamr1 protein_coding protein_coding MGP_CASTEiJ_T0056280.1 MGP_CASTEiJ_G0025383.1 mouse_genomes_project 2 103694541 103702517 + Pamr1 protein_coding processed_transcript MGP_CASTEiJ_T0056281.1 MGP_CASTEiJ_G0025383.1 mouse_genomes_project 2 103694620 103777922 + Pamr1 protein_coding retained_intron MGP_CASTEiJ_T0056282.1 MGP_CASTEiJ_G0025383.1 mouse_genomes_project 2 103778298 103782975 + Pamr1 protein_coding retained_intron MGP_CASTEiJ_T0055600.1 MGP_CASTEiJ_G0025112.1 mouse_genomes_project 2 85348774 85352887 + Tnks1bp1 protein_coding processed_transcript MGP_CASTEiJ_T0055601.1 MGP_CASTEiJ_G0025112.1 mouse_genomes_project 2 85348807 85373814 + Tnks1bp1 protein_coding processed_transcript MGP_CASTEiJ_T0055602.1 MGP_CASTEiJ_G0025112.1 mouse_genomes_project 2 85348823 85364855 + MGP_CASTEiJ_P0055602 Tnks1bp1 protein_coding protein_coding MGP_CASTEiJ_T0055603.1 MGP_CASTEiJ_G0025112.1 mouse_genomes_project 2 85351214 85352805 + Tnks1bp1 protein_coding processed_transcript MGP_CASTEiJ_T0055604.1 MGP_CASTEiJ_G0025112.1 mouse_genomes_project 2 85351214 85373818 + MGP_CASTEiJ_P0055604 Tnks1bp1 protein_coding protein_coding MGP_CASTEiJ_T0055605.1 MGP_CASTEiJ_G0025112.1 mouse_genomes_project 2 85351362 85373808 + Tnks1bp1 protein_coding processed_transcript MGP_CASTEiJ_T0055606.1 MGP_CASTEiJ_G0025112.1 mouse_genomes_project 2 85351647 85359320 + Tnks1bp1 protein_coding processed_transcript MGP_CASTEiJ_T0056552.1 MGP_CASTEiJ_G0025454.1 mouse_genomes_project 2 113185811 113186750 + MGP_CASTEiJ_P0056552 protein_coding protein_coding MGP_CASTEiJ_T0013074.1 MGP_CASTEiJ_G0011237.1 mouse_genomes_project 2 26551223 26551347 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017029.1 MGP_CASTEiJ_G0014733.1 mouse_genomes_project 2 56040648 56099337 - BB557941 processed_transcript processed_transcript MGP_CASTEiJ_T0057316.1 MGP_CASTEiJ_G0025622.1 mouse_genomes_project 2 128869818 128919244 - MGP_CASTEiJ_P0057316 Gabpb1 protein_coding protein_coding MGP_CASTEiJ_T0057317.1 MGP_CASTEiJ_G0025622.1 mouse_genomes_project 2 128871286 128919178 - MGP_CASTEiJ_P0057317 Gabpb1 protein_coding protein_coding MGP_CASTEiJ_T0057318.1 MGP_CASTEiJ_G0025622.1 mouse_genomes_project 2 128871288 128919220 - MGP_CASTEiJ_P0057318 Gabpb1 protein_coding protein_coding MGP_CASTEiJ_T0057319.1 MGP_CASTEiJ_G0025622.1 mouse_genomes_project 2 128882512 128920013 - MGP_CASTEiJ_P0057319 Gabpb1 protein_coding protein_coding MGP_CASTEiJ_T0057320.1 MGP_CASTEiJ_G0025622.1 mouse_genomes_project 2 128882897 128919162 - MGP_CASTEiJ_P0057320 Gabpb1 protein_coding protein_coding MGP_CASTEiJ_T0057321.1 MGP_CASTEiJ_G0025622.1 mouse_genomes_project 2 128891650 128919268 - MGP_CASTEiJ_P0057321 Gabpb1 protein_coding protein_coding MGP_CASTEiJ_T0057322.1 MGP_CASTEiJ_G0025622.1 mouse_genomes_project 2 128896249 128919015 - Gabpb1 protein_coding processed_transcript MGP_CASTEiJ_T0057323.1 MGP_CASTEiJ_G0025622.1 mouse_genomes_project 2 128897540 128919028 - MGP_CASTEiJ_P0057323 Gabpb1 protein_coding protein_coding MGP_CASTEiJ_T0057324.1 MGP_CASTEiJ_G0025622.1 mouse_genomes_project 2 128897617 128907039 - MGP_CASTEiJ_P0057324 Gabpb1 protein_coding protein_coding MGP_CASTEiJ_T0053108.1 MGP_CASTEiJ_G0024666.1 mouse_genomes_project 2 23338825 23341361 + MGP_CASTEiJ_P0053108 Lcn3 protein_coding protein_coding MGP_CASTEiJ_T0010060.1 MGP_CASTEiJ_G0008248.1 mouse_genomes_project 2 7721832 7721928 + Mir466f-2 miRNA miRNA MGP_CASTEiJ_T0053951.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30380152 30405851 + MGP_CASTEiJ_P0053951 Ciz1 protein_coding protein_coding MGP_CASTEiJ_T0053952.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30390605 30395002 + Ciz1 protein_coding processed_transcript MGP_CASTEiJ_T0053953.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30390605 30395123 + MGP_CASTEiJ_P0053953 Ciz1 protein_coding protein_coding MGP_CASTEiJ_T0053954.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30390656 30397713 + MGP_CASTEiJ_P0053954 Ciz1 protein_coding protein_coding MGP_CASTEiJ_T0053955.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30390793 30405857 + MGP_CASTEiJ_P0053955 Ciz1 protein_coding protein_coding MGP_CASTEiJ_T0053956.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30390793 30405851 + MGP_CASTEiJ_P0053956 Ciz1 protein_coding protein_coding MGP_CASTEiJ_T0053957.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30390948 30408591 + Ciz1 protein_coding retained_intron MGP_CASTEiJ_T0053958.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30391028 30393446 + Ciz1 protein_coding processed_transcript MGP_CASTEiJ_T0053959.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30391149 30397914 + MGP_CASTEiJ_P0053959 Ciz1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053960.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30391351 30392583 + Ciz1 protein_coding retained_intron MGP_CASTEiJ_T0053961.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30391400 30405857 + MGP_CASTEiJ_P0053961 Ciz1 protein_coding protein_coding MGP_CASTEiJ_T0053962.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30391405 30405852 + MGP_CASTEiJ_P0053962 Ciz1 protein_coding protein_coding MGP_CASTEiJ_T0053963.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30392940 30395109 + Ciz1 protein_coding retained_intron MGP_CASTEiJ_T0053964.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30395006 30398884 + MGP_CASTEiJ_P0053964 Ciz1 protein_coding protein_coding MGP_CASTEiJ_T0053965.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30395066 30399896 + MGP_CASTEiJ_P0053965 Ciz1 protein_coding protein_coding MGP_CASTEiJ_T0053966.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30397652 30399341 + Ciz1 protein_coding processed_transcript MGP_CASTEiJ_T0053967.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30398499 30403106 + MGP_CASTEiJ_P0053967 Ciz1 protein_coding protein_coding MGP_CASTEiJ_T0053968.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30399425 30402124 + Ciz1 protein_coding retained_intron MGP_CASTEiJ_T0053969.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30399907 30402568 + Ciz1 protein_coding retained_intron MGP_CASTEiJ_T0053970.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30401776 30405853 + Ciz1 protein_coding retained_intron MGP_CASTEiJ_T0053971.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30402675 30403958 + Ciz1 protein_coding retained_intron MGP_CASTEiJ_T0053972.1 MGP_CASTEiJ_G0024799.1 mouse_genomes_project 2 30403056 30407848 + MGP_CASTEiJ_P0053972 Ciz1 protein_coding protein_coding MGP_CASTEiJ_T0056999.1 MGP_CASTEiJ_G0025558.1 mouse_genomes_project 2 122913664 122950111 + MGP_CASTEiJ_P0056999 Tmem62 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057000.1 MGP_CASTEiJ_G0025558.1 mouse_genomes_project 2 122913946 122950103 + MGP_CASTEiJ_P0057000 Tmem62 protein_coding protein_coding MGP_CASTEiJ_T0057001.1 MGP_CASTEiJ_G0025558.1 mouse_genomes_project 2 122914317 122917192 + Tmem62 protein_coding retained_intron MGP_CASTEiJ_T0057002.1 MGP_CASTEiJ_G0025558.1 mouse_genomes_project 2 122917654 122929723 + Tmem62 protein_coding processed_transcript MGP_CASTEiJ_T0057003.1 MGP_CASTEiJ_G0025558.1 mouse_genomes_project 2 122920931 122923521 + Tmem62 protein_coding processed_transcript MGP_CASTEiJ_T0057004.1 MGP_CASTEiJ_G0025558.1 mouse_genomes_project 2 122937388 122949302 + Tmem62 protein_coding retained_intron MGP_CASTEiJ_T0010089.1 MGP_CASTEiJ_G0008277.1 mouse_genomes_project 2 7755574 7755701 + Mir669i miRNA miRNA MGP_CASTEiJ_T0013140.1 MGP_CASTEiJ_G0011303.1 mouse_genomes_project 2 54673275 54674966 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056028.1 MGP_CASTEiJ_G0025338.1 mouse_genomes_project 2 92542159 92553013 - MGP_CASTEiJ_P0056028 F2 protein_coding protein_coding MGP_CASTEiJ_T0056029.1 MGP_CASTEiJ_G0025338.1 mouse_genomes_project 2 92542168 92553006 - MGP_CASTEiJ_P0056029 F2 protein_coding protein_coding MGP_CASTEiJ_T0056030.1 MGP_CASTEiJ_G0025338.1 mouse_genomes_project 2 92547762 92552994 - F2 protein_coding processed_transcript MGP_CASTEiJ_T0057175.1 MGP_CASTEiJ_G0025589.1 mouse_genomes_project 2 124243969 124262466 + MGP_CASTEiJ_P0057175 Terb2 protein_coding protein_coding MGP_CASTEiJ_T0057176.1 MGP_CASTEiJ_G0025589.1 mouse_genomes_project 2 124244171 124261024 + Terb2 protein_coding processed_transcript MGP_CASTEiJ_T0056992.1 MGP_CASTEiJ_G0025557.1 mouse_genomes_project 2 122783997 122900014 - MGP_CASTEiJ_P0056992 Ubr1 protein_coding protein_coding MGP_CASTEiJ_T0056993.1 MGP_CASTEiJ_G0025557.1 mouse_genomes_project 2 122786302 122796470 - Ubr1 protein_coding processed_transcript MGP_CASTEiJ_T0056994.1 MGP_CASTEiJ_G0025557.1 mouse_genomes_project 2 122797993 122817546 - Ubr1 protein_coding processed_transcript MGP_CASTEiJ_T0056995.1 MGP_CASTEiJ_G0025557.1 mouse_genomes_project 2 122829297 122842009 - Ubr1 protein_coding processed_transcript MGP_CASTEiJ_T0056996.1 MGP_CASTEiJ_G0025557.1 mouse_genomes_project 2 122848651 122858387 - Ubr1 protein_coding processed_transcript MGP_CASTEiJ_T0056997.1 MGP_CASTEiJ_G0025557.1 mouse_genomes_project 2 122873590 122899912 - Ubr1 protein_coding retained_intron MGP_CASTEiJ_T0056998.1 MGP_CASTEiJ_G0025557.1 mouse_genomes_project 2 122891401 122899991 - Ubr1 protein_coding retained_intron MGP_CASTEiJ_T0057391.1 MGP_CASTEiJ_G0025636.1 mouse_genomes_project 2 129625533 129627710 + MGP_CASTEiJ_P0057391 Dusp2 protein_coding protein_coding MGP_CASTEiJ_T0057392.1 MGP_CASTEiJ_G0025636.1 mouse_genomes_project 2 129625984 129626837 + Dusp2 protein_coding retained_intron MGP_CASTEiJ_T0059732.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183929275 183990133 - MGP_CASTEiJ_P0059732 Kcnq2 protein_coding protein_coding MGP_CASTEiJ_T0059733.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183929276 183990341 - MGP_CASTEiJ_P0059733 Kcnq2 protein_coding protein_coding MGP_CASTEiJ_T0059734.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183929283 183990168 - MGP_CASTEiJ_P0059734 Kcnq2 protein_coding protein_coding MGP_CASTEiJ_T0059735.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183929285 183990218 - MGP_CASTEiJ_P0059735 Kcnq2 protein_coding protein_coding MGP_CASTEiJ_T0059736.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183929285 183990218 - MGP_CASTEiJ_P0059736 Kcnq2 protein_coding protein_coding MGP_CASTEiJ_T0059737.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183929285 183990218 - MGP_CASTEiJ_P0059737 Kcnq2 protein_coding protein_coding MGP_CASTEiJ_T0059738.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183929285 183990218 - MGP_CASTEiJ_P0059738 Kcnq2 protein_coding protein_coding MGP_CASTEiJ_T0059739.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183933233 183990302 - MGP_CASTEiJ_P0059739 Kcnq2 protein_coding protein_coding MGP_CASTEiJ_T0059740.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183934149 183968361 - MGP_CASTEiJ_P0059740 Kcnq2 protein_coding protein_coding MGP_CASTEiJ_T0059741.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183934549 183990172 - MGP_CASTEiJ_P0059741 Kcnq2 protein_coding protein_coding MGP_CASTEiJ_T0059742.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183936053 183963456 - MGP_CASTEiJ_P0059742 Kcnq2 protein_coding protein_coding MGP_CASTEiJ_T0059743.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183936103 183949077 - Kcnq2 protein_coding processed_transcript MGP_CASTEiJ_T0059744.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183938231 183954450 - Kcnq2 protein_coding retained_intron MGP_CASTEiJ_T0059745.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183939634 183990218 - Kcnq2 protein_coding retained_intron MGP_CASTEiJ_T0059746.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183949896 183990218 - Kcnq2 protein_coding retained_intron MGP_CASTEiJ_T0059747.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183950119 183990218 - Kcnq2 protein_coding retained_intron MGP_CASTEiJ_T0059748.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183962145 183990218 - Kcnq2 protein_coding retained_intron MGP_CASTEiJ_T0059749.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183962145 183990218 - Kcnq2 protein_coding retained_intron MGP_CASTEiJ_T0059750.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183962145 183990218 - Kcnq2 protein_coding processed_transcript MGP_CASTEiJ_T0059751.1 MGP_CASTEiJ_G0026185.1 mouse_genomes_project 2 183962145 183990284 - Kcnq2 protein_coding retained_intron MGP_CASTEiJ_T0098751.1 MGP_CASTEiJ_G0035682.1 mouse_genomes_project 2 105244573 105244712 + Gm24644 scaRNA scaRNA MGP_CASTEiJ_T0010157.1 MGP_CASTEiJ_G0008345.1 mouse_genomes_project 2 105043487 105043583 + Gm22757 miRNA miRNA MGP_CASTEiJ_T0007152.1 MGP_CASTEiJ_G0005879.1 mouse_genomes_project 2 139997025 139997775 + Gm28214 lincRNA lincRNA MGP_CASTEiJ_T0055751.1 MGP_CASTEiJ_G0025241.1 mouse_genomes_project 2 89197952 89198888 + MGP_CASTEiJ_P0055751 Olfr1184 protein_coding protein_coding MGP_CASTEiJ_T0000998.1 MGP_CASTEiJ_G0000934.1 mouse_genomes_project 2 10414469 10416727 - TEC TEC MGP_CASTEiJ_T0017146.1 MGP_CASTEiJ_G0014797.1 mouse_genomes_project 2 160530205 160552419 - 5430405H02Rik processed_transcript antisense MGP_CASTEiJ_T0017147.1 MGP_CASTEiJ_G0014797.1 mouse_genomes_project 2 160538267 160552350 - 5430405H02Rik processed_transcript antisense MGP_CASTEiJ_T0017148.1 MGP_CASTEiJ_G0014797.1 mouse_genomes_project 2 160538267 160552401 - 5430405H02Rik processed_transcript antisense MGP_CASTEiJ_T0053209.1 MGP_CASTEiJ_G0024684.1 mouse_genomes_project 2 23999848 24007632 + MGP_CASTEiJ_P0053209 Pmpca protein_coding protein_coding MGP_CASTEiJ_T0053210.1 MGP_CASTEiJ_G0024684.1 mouse_genomes_project 2 23999857 24004451 + MGP_CASTEiJ_P0053210 Pmpca protein_coding protein_coding MGP_CASTEiJ_T0053211.1 MGP_CASTEiJ_G0024684.1 mouse_genomes_project 2 23999863 24000805 + Pmpca protein_coding processed_transcript MGP_CASTEiJ_T0053212.1 MGP_CASTEiJ_G0024684.1 mouse_genomes_project 2 23999863 24000712 + Pmpca protein_coding processed_transcript MGP_CASTEiJ_T0053213.1 MGP_CASTEiJ_G0024684.1 mouse_genomes_project 2 23999865 24002476 + Pmpca protein_coding processed_transcript MGP_CASTEiJ_T0053214.1 MGP_CASTEiJ_G0024684.1 mouse_genomes_project 2 24001436 24002908 + Pmpca protein_coding processed_transcript MGP_CASTEiJ_T0013295.1 MGP_CASTEiJ_G0011458.1 mouse_genomes_project 2 110905071 110905557 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058046.1 MGP_CASTEiJ_G0025782.1 mouse_genomes_project 2 150254360 150256487 - MGP_CASTEiJ_P0058046 Nkx2-4 protein_coding protein_coding MGP_CASTEiJ_T0058068.1 MGP_CASTEiJ_G0025791.1 mouse_genomes_project 2 151950432 151991988 - MGP_CASTEiJ_P0058068 Napb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058069.1 MGP_CASTEiJ_G0025791.1 mouse_genomes_project 2 151950432 151992042 - MGP_CASTEiJ_P0058069 Napb protein_coding protein_coding MGP_CASTEiJ_T0058070.1 MGP_CASTEiJ_G0025791.1 mouse_genomes_project 2 151964638 151991966 - Napb protein_coding retained_intron MGP_CASTEiJ_T0100918.1 MGP_CASTEiJ_G0037831.1 mouse_genomes_project 2 154284140 154284269 + Gm22187 snoRNA snoRNA MGP_CASTEiJ_T0058232.1 MGP_CASTEiJ_G0025842.1 mouse_genomes_project 2 155797484 155801835 - MGP_CASTEiJ_P0058232 Defb22 protein_coding protein_coding MGP_CASTEiJ_T0055687.1 MGP_CASTEiJ_G0025188.1 mouse_genomes_project 2 87783452 87784433 + MGP_CASTEiJ_P0055687 Olfr1115 protein_coding protein_coding MGP_CASTEiJ_T0013063.1 MGP_CASTEiJ_G0011226.1 mouse_genomes_project 2 21954301 21955222 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057733.1 MGP_CASTEiJ_G0025717.1 mouse_genomes_project 2 134540339 134580318 - MGP_CASTEiJ_P0057733 Rassf2 protein_coding protein_coding MGP_CASTEiJ_T0057734.1 MGP_CASTEiJ_G0025717.1 mouse_genomes_project 2 134543694 134580518 - MGP_CASTEiJ_P0057734 Rassf2 protein_coding protein_coding MGP_CASTEiJ_T0057735.1 MGP_CASTEiJ_G0025717.1 mouse_genomes_project 2 134551204 134571517 - Rassf2 protein_coding retained_intron MGP_CASTEiJ_T0057736.1 MGP_CASTEiJ_G0025717.1 mouse_genomes_project 2 134553189 134580574 - MGP_CASTEiJ_P0057736 Rassf2 protein_coding protein_coding MGP_CASTEiJ_T0057737.1 MGP_CASTEiJ_G0025717.1 mouse_genomes_project 2 134560013 134579483 - MGP_CASTEiJ_P0057737 Rassf2 protein_coding protein_coding MGP_CASTEiJ_T0059015.1 MGP_CASTEiJ_G0026009.1 mouse_genomes_project 2 167938947 167946024 + MGP_CASTEiJ_P0059015 Kcnk15 protein_coding protein_coding MGP_CASTEiJ_T0059016.1 MGP_CASTEiJ_G0026009.1 mouse_genomes_project 2 167939029 167946828 + MGP_CASTEiJ_P0059016 Kcnk15 protein_coding protein_coding MGP_CASTEiJ_T0058206.1 MGP_CASTEiJ_G0025833.1 mouse_genomes_project 2 155578128 155610647 + MGP_CASTEiJ_P0058206 Tbc1d20 protein_coding protein_coding MGP_CASTEiJ_T0058207.1 MGP_CASTEiJ_G0025833.1 mouse_genomes_project 2 155578151 155604770 + MGP_CASTEiJ_P0058207 Tbc1d20 protein_coding protein_coding MGP_CASTEiJ_T0058208.1 MGP_CASTEiJ_G0025833.1 mouse_genomes_project 2 155578172 155610647 + Tbc1d20 protein_coding retained_intron MGP_CASTEiJ_T0058209.1 MGP_CASTEiJ_G0025833.1 mouse_genomes_project 2 155578480 155605116 + MGP_CASTEiJ_P0058209 Tbc1d20 protein_coding protein_coding MGP_CASTEiJ_T0058210.1 MGP_CASTEiJ_G0025833.1 mouse_genomes_project 2 155604886 155607462 + Tbc1d20 protein_coding retained_intron MGP_CASTEiJ_T0006982.1 MGP_CASTEiJ_G0005741.1 mouse_genomes_project 2 26024177 26038481 - Gm13373 lincRNA lincRNA MGP_CASTEiJ_T0004003.1 MGP_CASTEiJ_G0003550.1 mouse_genomes_project 2 156346289 156347907 - Gm14199 antisense antisense MGP_CASTEiJ_T0013036.1 MGP_CASTEiJ_G0011199.1 mouse_genomes_project 2 12851269 12851699 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054430.1 MGP_CASTEiJ_G0024897.1 mouse_genomes_project 2 36597804 36612005 + Lhx2 protein_coding retained_intron MGP_CASTEiJ_T0054431.1 MGP_CASTEiJ_G0024897.1 mouse_genomes_project 2 36599412 36613136 + MGP_CASTEiJ_P0054431 Lhx2 protein_coding protein_coding MGP_CASTEiJ_T0054432.1 MGP_CASTEiJ_G0024897.1 mouse_genomes_project 2 36610079 36612942 + MGP_CASTEiJ_P0054432 Lhx2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054433.1 MGP_CASTEiJ_G0024897.1 mouse_genomes_project 2 36610085 36629097 + MGP_CASTEiJ_P0054433 Lhx2 protein_coding protein_coding MGP_CASTEiJ_T0054434.1 MGP_CASTEiJ_G0024897.1 mouse_genomes_project 2 36610843 36612884 + MGP_CASTEiJ_P0054434 Lhx2 protein_coding protein_coding MGP_CASTEiJ_T0054435.1 MGP_CASTEiJ_G0024897.1 mouse_genomes_project 2 36612113 36619660 + Lhx2 protein_coding retained_intron MGP_CASTEiJ_T0056713.1 MGP_CASTEiJ_G0025504.1 mouse_genomes_project 2 120582833 120588155 + MGP_CASTEiJ_P0056713 Phgr1 protein_coding protein_coding MGP_CASTEiJ_T0056714.1 MGP_CASTEiJ_G0025504.1 mouse_genomes_project 2 120582833 120588154 + MGP_CASTEiJ_P0056714 Phgr1 protein_coding protein_coding MGP_CASTEiJ_T0054495.1 MGP_CASTEiJ_G0024911.1 mouse_genomes_project 2 38907703 38932327 - Lrp1b protein_coding processed_transcript MGP_CASTEiJ_T0054496.1 MGP_CASTEiJ_G0024911.1 mouse_genomes_project 2 38907705 41083191 - MGP_CASTEiJ_P0054496 Lrp1b protein_coding protein_coding MGP_CASTEiJ_T0054497.1 MGP_CASTEiJ_G0024911.1 mouse_genomes_project 2 38907991 39027191 - MGP_CASTEiJ_P0054497 Lrp1b protein_coding protein_coding MGP_CASTEiJ_T0054498.1 MGP_CASTEiJ_G0024911.1 mouse_genomes_project 2 38907991 38945546 - MGP_CASTEiJ_P0054498 Lrp1b protein_coding protein_coding MGP_CASTEiJ_T0054499.1 MGP_CASTEiJ_G0024911.1 mouse_genomes_project 2 38912778 38977202 - MGP_CASTEiJ_P0054499 Lrp1b protein_coding protein_coding MGP_CASTEiJ_T0054500.1 MGP_CASTEiJ_G0024911.1 mouse_genomes_project 2 38999278 39021304 - Lrp1b protein_coding retained_intron MGP_CASTEiJ_T0054501.1 MGP_CASTEiJ_G0024911.1 mouse_genomes_project 2 39123389 40166880 - MGP_CASTEiJ_P0054501 Lrp1b protein_coding protein_coding MGP_CASTEiJ_T0054502.1 MGP_CASTEiJ_G0024911.1 mouse_genomes_project 2 39175420 40168556 - MGP_CASTEiJ_P0054502 Lrp1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0054503.1 MGP_CASTEiJ_G0024911.1 mouse_genomes_project 2 39616805 41082623 - MGP_CASTEiJ_P0054503 Lrp1b protein_coding protein_coding MGP_CASTEiJ_T0054504.1 MGP_CASTEiJ_G0024911.1 mouse_genomes_project 2 39865342 41082639 - Lrp1b protein_coding retained_intron MGP_CASTEiJ_T0054505.1 MGP_CASTEiJ_G0024911.1 mouse_genomes_project 2 40465152 41082492 - MGP_CASTEiJ_P0054505 Lrp1b protein_coding protein_coding MGP_CASTEiJ_T0054506.1 MGP_CASTEiJ_G0024911.1 mouse_genomes_project 2 40735704 41082822 - Lrp1b protein_coding retained_intron MGP_CASTEiJ_T0054507.1 MGP_CASTEiJ_G0024911.1 mouse_genomes_project 2 41079436 41082581 - MGP_CASTEiJ_P0054507 Lrp1b protein_coding protein_coding MGP_CASTEiJ_T0055203.1 MGP_CASTEiJ_G0025029.1 mouse_genomes_project 2 72846771 72981062 - MGP_CASTEiJ_P0055203 Ola1 protein_coding protein_coding MGP_CASTEiJ_T0055204.1 MGP_CASTEiJ_G0025029.1 mouse_genomes_project 2 72847170 72981041 - Ola1 protein_coding processed_transcript MGP_CASTEiJ_T0055205.1 MGP_CASTEiJ_G0025029.1 mouse_genomes_project 2 72847172 72979577 - MGP_CASTEiJ_P0055205 Ola1 protein_coding protein_coding MGP_CASTEiJ_T0055206.1 MGP_CASTEiJ_G0025029.1 mouse_genomes_project 2 72893272 72980948 - MGP_CASTEiJ_P0055206 Ola1 protein_coding protein_coding MGP_CASTEiJ_T0055207.1 MGP_CASTEiJ_G0025029.1 mouse_genomes_project 2 72965421 72981027 - Ola1 protein_coding processed_transcript MGP_CASTEiJ_T0055208.1 MGP_CASTEiJ_G0025029.1 mouse_genomes_project 2 72979487 72985516 - Ola1 protein_coding processed_transcript MGP_CASTEiJ_T0007007.1 MGP_CASTEiJ_G0005760.1 mouse_genomes_project 2 44331363 44357253 + Gm13465 lincRNA lincRNA MGP_CASTEiJ_T0053392.1 MGP_CASTEiJ_G0024717.1 mouse_genomes_project 2 26166933 26172878 + Ppp1r26 protein_coding processed_transcript MGP_CASTEiJ_T0053393.1 MGP_CASTEiJ_G0024717.1 mouse_genomes_project 2 26166999 26173202 + Ppp1r26 protein_coding processed_transcript MGP_CASTEiJ_T0053394.1 MGP_CASTEiJ_G0024717.1 mouse_genomes_project 2 26170386 26173038 + Ppp1r26 protein_coding processed_transcript MGP_CASTEiJ_T0053395.1 MGP_CASTEiJ_G0024717.1 mouse_genomes_project 2 26170386 26177867 + MGP_CASTEiJ_P0053395 Ppp1r26 protein_coding protein_coding MGP_CASTEiJ_T0053396.1 MGP_CASTEiJ_G0024717.1 mouse_genomes_project 2 26170386 26177870 + MGP_CASTEiJ_P0053396 Ppp1r26 protein_coding protein_coding MGP_CASTEiJ_T0054366.1 MGP_CASTEiJ_G0024877.1 mouse_genomes_project 2 35124702 35125635 - MGP_CASTEiJ_P0054366 Olfr355 protein_coding protein_coding MGP_CASTEiJ_T0059124.1 MGP_CASTEiJ_G0026051.1 mouse_genomes_project 2 168978310 168997007 + MGP_CASTEiJ_P0059124 Zswim3 protein_coding protein_coding MGP_CASTEiJ_T0055766.1 MGP_CASTEiJ_G0025255.1 mouse_genomes_project 2 89707190 89708117 - MGP_CASTEiJ_P0055766 Olfr1208 protein_coding protein_coding MGP_CASTEiJ_T0003996.1 MGP_CASTEiJ_G0003544.1 mouse_genomes_project 2 154944451 154952920 - Tmem74bos antisense antisense MGP_CASTEiJ_T0003997.1 MGP_CASTEiJ_G0003544.1 mouse_genomes_project 2 154946012 154952646 - Tmem74bos antisense antisense MGP_CASTEiJ_T0054280.1 MGP_CASTEiJ_G0024847.1 mouse_genomes_project 2 33477723 33529207 + MGP_CASTEiJ_P0054280 Gsn protein_coding protein_coding MGP_CASTEiJ_T0054281.1 MGP_CASTEiJ_G0024847.1 mouse_genomes_project 2 33477727 33524568 + MGP_CASTEiJ_P0054281 Gsn protein_coding protein_coding MGP_CASTEiJ_T0054282.1 MGP_CASTEiJ_G0024847.1 mouse_genomes_project 2 33477739 33514882 + MGP_CASTEiJ_P0054282 Gsn protein_coding protein_coding MGP_CASTEiJ_T0054283.1 MGP_CASTEiJ_G0024847.1 mouse_genomes_project 2 33477752 33514880 + MGP_CASTEiJ_P0054283 Gsn protein_coding protein_coding MGP_CASTEiJ_T0054284.1 MGP_CASTEiJ_G0024847.1 mouse_genomes_project 2 33477792 33511760 + MGP_CASTEiJ_P0054284 Gsn protein_coding protein_coding MGP_CASTEiJ_T0054285.1 MGP_CASTEiJ_G0024847.1 mouse_genomes_project 2 33503698 33529209 + MGP_CASTEiJ_P0054285 Gsn protein_coding protein_coding MGP_CASTEiJ_T0054286.1 MGP_CASTEiJ_G0024847.1 mouse_genomes_project 2 33503831 33506344 + Gsn protein_coding retained_intron MGP_CASTEiJ_T0003869.1 MGP_CASTEiJ_G0003460.1 mouse_genomes_project 2 69356003 69357410 + antisense antisense MGP_CASTEiJ_T0013049.1 MGP_CASTEiJ_G0011212.1 mouse_genomes_project 2 16978074 16978302 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055618.1 MGP_CASTEiJ_G0025122.1 mouse_genomes_project 2 86032870 86036376 - MGP_CASTEiJ_P0055618 protein_coding protein_coding MGP_CASTEiJ_T0058038.1 MGP_CASTEiJ_G0025780.1 mouse_genomes_project 2 150017212 150142153 + MGP_CASTEiJ_P0058038 Kiz protein_coding protein_coding MGP_CASTEiJ_T0058039.1 MGP_CASTEiJ_G0025780.1 mouse_genomes_project 2 150017257 150051707 + MGP_CASTEiJ_P0058039 Kiz protein_coding protein_coding MGP_CASTEiJ_T0058040.1 MGP_CASTEiJ_G0025780.1 mouse_genomes_project 2 150123914 150142148 + Kiz protein_coding retained_intron MGP_CASTEiJ_T0013198.1 MGP_CASTEiJ_G0011361.1 mouse_genomes_project 2 78674703 78677811 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058966.1 MGP_CASTEiJ_G0025996.1 mouse_genomes_project 2 167117768 167118590 - MGP_CASTEiJ_P0058966 Gtsf1l protein_coding protein_coding MGP_CASTEiJ_T0007150.1 MGP_CASTEiJ_G0005877.1 mouse_genomes_project 2 138393637 138400369 - Gm14211 lincRNA lincRNA MGP_CASTEiJ_T0052356.1 MGP_CASTEiJ_G0024537.1 mouse_genomes_project 2 7617029 7688234 + MGP_CASTEiJ_P0052356 Sfmbt2 protein_coding protein_coding MGP_CASTEiJ_T0052357.1 MGP_CASTEiJ_G0024537.1 mouse_genomes_project 2 7617030 7688234 + MGP_CASTEiJ_P0052357 Sfmbt2 protein_coding protein_coding MGP_CASTEiJ_T0052358.1 MGP_CASTEiJ_G0024537.1 mouse_genomes_project 2 7617037 7654430 + Sfmbt2 protein_coding processed_transcript MGP_CASTEiJ_T0052359.1 MGP_CASTEiJ_G0024537.1 mouse_genomes_project 2 7618953 7688234 + MGP_CASTEiJ_P0052359 Sfmbt2 protein_coding protein_coding MGP_CASTEiJ_T0052360.1 MGP_CASTEiJ_G0024537.1 mouse_genomes_project 2 7618953 7830908 + MGP_CASTEiJ_P0052360 Sfmbt2 protein_coding protein_coding MGP_CASTEiJ_T0052361.1 MGP_CASTEiJ_G0024537.1 mouse_genomes_project 2 7618965 7643557 + Sfmbt2 protein_coding processed_transcript MGP_CASTEiJ_T0052362.1 MGP_CASTEiJ_G0024537.1 mouse_genomes_project 2 7618967 7830923 + MGP_CASTEiJ_P0052362 Sfmbt2 protein_coding protein_coding MGP_CASTEiJ_T0053307.1 MGP_CASTEiJ_G0024700.1 mouse_genomes_project 2 24561019 24571381 + MGP_CASTEiJ_P0053307 Stkld1 protein_coding protein_coding MGP_CASTEiJ_T0053308.1 MGP_CASTEiJ_G0024700.1 mouse_genomes_project 2 24561041 24583680 + MGP_CASTEiJ_P0053308 Stkld1 protein_coding protein_coding MGP_CASTEiJ_T0053309.1 MGP_CASTEiJ_G0024700.1 mouse_genomes_project 2 24562296 24583575 + MGP_CASTEiJ_P0053309 Stkld1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0007191.1 MGP_CASTEiJ_G0005910.1 mouse_genomes_project 2 163918459 163947041 + 9130015L21Rik lincRNA lincRNA MGP_CASTEiJ_T0055533.1 MGP_CASTEiJ_G0025094.1 mouse_genomes_project 2 84933022 84934568 - MGP_CASTEiJ_P0055533 2700094K13Rik protein_coding protein_coding MGP_CASTEiJ_T0055534.1 MGP_CASTEiJ_G0025094.1 mouse_genomes_project 2 84933028 84934506 - MGP_CASTEiJ_P0055534 2700094K13Rik protein_coding protein_coding MGP_CASTEiJ_T0055535.1 MGP_CASTEiJ_G0025094.1 mouse_genomes_project 2 84933114 84934474 - MGP_CASTEiJ_P0055535 2700094K13Rik protein_coding protein_coding MGP_CASTEiJ_T0055536.1 MGP_CASTEiJ_G0025094.1 mouse_genomes_project 2 84933502 84934495 - MGP_CASTEiJ_P0055536 2700094K13Rik protein_coding protein_coding MGP_CASTEiJ_T0055537.1 MGP_CASTEiJ_G0025094.1 mouse_genomes_project 2 84933757 84934474 - 2700094K13Rik protein_coding retained_intron MGP_CASTEiJ_T0055538.1 MGP_CASTEiJ_G0025094.1 mouse_genomes_project 2 84933824 84934452 - MGP_CASTEiJ_P0055538 2700094K13Rik protein_coding protein_coding MGP_CASTEiJ_T0100879.1 MGP_CASTEiJ_G0037792.1 mouse_genomes_project 2 60330156 60330288 + Gm26422 snoRNA snoRNA MGP_CASTEiJ_T0100861.1 MGP_CASTEiJ_G0037774.1 mouse_genomes_project 2 29132862 29132986 + Gm22516 snoRNA snoRNA MGP_CASTEiJ_T0054367.1 MGP_CASTEiJ_G0024878.1 mouse_genomes_project 2 35142156 35143104 + MGP_CASTEiJ_P0054367 Olfr356 protein_coding protein_coding MGP_CASTEiJ_T0003759.1 MGP_CASTEiJ_G0003373.1 mouse_genomes_project 2 742749 744911 - Gm13185 antisense antisense MGP_CASTEiJ_T0058110.1 MGP_CASTEiJ_G0025809.1 mouse_genomes_project 2 153891565 153901364 - MGP_CASTEiJ_P0058110 Vsx1 protein_coding protein_coding MGP_CASTEiJ_T0017122.1 MGP_CASTEiJ_G0014782.1 mouse_genomes_project 2 131444149 131448925 - Gm14022 processed_transcript processed_transcript MGP_CASTEiJ_T0001032.1 MGP_CASTEiJ_G0000968.1 mouse_genomes_project 2 37149941 37153322 + TEC TEC MGP_CASTEiJ_T0013378.1 MGP_CASTEiJ_G0011541.1 mouse_genomes_project 2 148587031 148587495 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054614.1 MGP_CASTEiJ_G0024925.1 mouse_genomes_project 2 50440228 50441126 + MGP_CASTEiJ_P0054614 Tas2r134 protein_coding protein_coding MGP_CASTEiJ_T0102226.1 MGP_CASTEiJ_G0038951.1 mouse_genomes_project 2 86876823 86877763 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013265.1 MGP_CASTEiJ_G0011428.1 mouse_genomes_project 2 101526507 101526763 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006942.1 MGP_CASTEiJ_G0005712.1 mouse_genomes_project 2 3357591 3358876 - Gm13383 lincRNA lincRNA MGP_CASTEiJ_T0013065.1 MGP_CASTEiJ_G0011228.1 mouse_genomes_project 2 22166692 22167337 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100862.1 MGP_CASTEiJ_G0037775.1 mouse_genomes_project 2 30233857 30233942 + Gm22192 snoRNA snoRNA MGP_CASTEiJ_T0054671.1 MGP_CASTEiJ_G0024935.1 mouse_genomes_project 2 52068812 52124988 - MGP_CASTEiJ_P0054671 Prpf40a protein_coding protein_coding MGP_CASTEiJ_T0054672.1 MGP_CASTEiJ_G0024935.1 mouse_genomes_project 2 52073304 52079436 - Prpf40a protein_coding processed_transcript MGP_CASTEiJ_T0054673.1 MGP_CASTEiJ_G0024935.1 mouse_genomes_project 2 52087182 52125047 - MGP_CASTEiJ_P0054673 Prpf40a protein_coding protein_coding MGP_CASTEiJ_T0054674.1 MGP_CASTEiJ_G0024935.1 mouse_genomes_project 2 52106237 52124967 - Prpf40a protein_coding processed_transcript MGP_CASTEiJ_T0054675.1 MGP_CASTEiJ_G0024935.1 mouse_genomes_project 2 52109919 52124988 - Prpf40a protein_coding processed_transcript MGP_CASTEiJ_T0055219.1 MGP_CASTEiJ_G0025033.1 mouse_genomes_project 2 73118137 73163007 - MGP_CASTEiJ_P0055219 Gpr155 protein_coding protein_coding MGP_CASTEiJ_T0055220.1 MGP_CASTEiJ_G0025033.1 mouse_genomes_project 2 73118589 73162847 - MGP_CASTEiJ_P0055220 Gpr155 protein_coding protein_coding MGP_CASTEiJ_T0055221.1 MGP_CASTEiJ_G0025033.1 mouse_genomes_project 2 73119626 73162878 - MGP_CASTEiJ_P0055221 Gpr155 protein_coding protein_coding MGP_CASTEiJ_T0055222.1 MGP_CASTEiJ_G0025033.1 mouse_genomes_project 2 73124254 73138776 - MGP_CASTEiJ_P0055222 Gpr155 protein_coding protein_coding MGP_CASTEiJ_T0055223.1 MGP_CASTEiJ_G0025033.1 mouse_genomes_project 2 73127596 73162833 - Gpr155 protein_coding processed_transcript MGP_CASTEiJ_T0055224.1 MGP_CASTEiJ_G0025033.1 mouse_genomes_project 2 73127596 73162833 - Gpr155 protein_coding retained_intron MGP_CASTEiJ_T0055225.1 MGP_CASTEiJ_G0025033.1 mouse_genomes_project 2 73138684 73146500 - Gpr155 protein_coding processed_transcript MGP_CASTEiJ_T0055226.1 MGP_CASTEiJ_G0025033.1 mouse_genomes_project 2 73157834 73162846 - Gpr155 protein_coding retained_intron MGP_CASTEiJ_T0007232.1 MGP_CASTEiJ_G0005946.1 mouse_genomes_project 2 174252296 174526129 - lincRNA lincRNA MGP_CASTEiJ_T0007233.1 MGP_CASTEiJ_G0005946.1 mouse_genomes_project 2 174252326 174526129 - lincRNA lincRNA MGP_CASTEiJ_T0007103.1 MGP_CASTEiJ_G0005840.1 mouse_genomes_project 2 110455346 110458040 + Gm13923 lincRNA lincRNA MGP_CASTEiJ_T0059644.1 MGP_CASTEiJ_G0026165.1 mouse_genomes_project 2 183055001 183056071 + MGP_CASTEiJ_P0059644 Rps21 protein_coding protein_coding MGP_CASTEiJ_T0059645.1 MGP_CASTEiJ_G0026165.1 mouse_genomes_project 2 183055003 183056068 + Rps21 protein_coding retained_intron MGP_CASTEiJ_T0059646.1 MGP_CASTEiJ_G0026165.1 mouse_genomes_project 2 183055042 183055627 + Rps21 protein_coding retained_intron MGP_CASTEiJ_T0059647.1 MGP_CASTEiJ_G0026165.1 mouse_genomes_project 2 183055042 183055769 + Rps21 protein_coding retained_intron MGP_CASTEiJ_T0010210.1 MGP_CASTEiJ_G0008398.1 mouse_genomes_project 2 183738990 183739058 + Mir124a-3 miRNA miRNA MGP_CASTEiJ_T0055075.1 MGP_CASTEiJ_G0025007.1 mouse_genomes_project 2 69996199 70000496 + MGP_CASTEiJ_P0055075 Sp5 protein_coding protein_coding MGP_CASTEiJ_T0001016.1 MGP_CASTEiJ_G0000952.1 mouse_genomes_project 2 22399684 22404119 - TEC TEC MGP_CASTEiJ_T0053335.1 MGP_CASTEiJ_G0024706.1 mouse_genomes_project 2 24710701 24743728 + MGP_CASTEiJ_P0053335 Adamtsl2 protein_coding protein_coding MGP_CASTEiJ_T0053336.1 MGP_CASTEiJ_G0024706.1 mouse_genomes_project 2 24731949 24743722 + Adamtsl2 protein_coding retained_intron MGP_CASTEiJ_T0053337.1 MGP_CASTEiJ_G0024706.1 mouse_genomes_project 2 24732727 24733343 + Adamtsl2 protein_coding processed_transcript MGP_CASTEiJ_T0053338.1 MGP_CASTEiJ_G0024706.1 mouse_genomes_project 2 24738462 24742097 + Adamtsl2 protein_coding retained_intron MGP_CASTEiJ_T0053339.1 MGP_CASTEiJ_G0024706.1 mouse_genomes_project 2 24739339 24743728 + Adamtsl2 protein_coding retained_intron MGP_CASTEiJ_T0007084.1 MGP_CASTEiJ_G0005824.1 mouse_genomes_project 2 96466719 96471108 + Gm13794 lincRNA lincRNA MGP_CASTEiJ_T0013415.1 MGP_CASTEiJ_G0011578.1 mouse_genomes_project 2 159975105 159975384 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010126.1 MGP_CASTEiJ_G0008314.1 mouse_genomes_project 2 36469870 36469952 - Gm44455 miRNA miRNA MGP_CASTEiJ_T0102219.1 MGP_CASTEiJ_G0038944.1 mouse_genomes_project 2 86025779 86026232 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0057532.1 MGP_CASTEiJ_G0025675.1 mouse_genomes_project 2 132585457 132593324 - protein_coding retained_intron MGP_CASTEiJ_T0057533.1 MGP_CASTEiJ_G0025675.1 mouse_genomes_project 2 132585683 132593699 - MGP_CASTEiJ_P0057533 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057534.1 MGP_CASTEiJ_G0025675.1 mouse_genomes_project 2 132585830 132593424 - MGP_CASTEiJ_P0057534 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057535.1 MGP_CASTEiJ_G0025675.1 mouse_genomes_project 2 132590873 132593355 - protein_coding retained_intron MGP_CASTEiJ_T0054373.1 MGP_CASTEiJ_G0024883.1 mouse_genomes_project 2 35285274 35286228 - MGP_CASTEiJ_P0054373 Olfr362 protein_coding protein_coding MGP_CASTEiJ_T0058273.1 MGP_CASTEiJ_G0025859.1 mouse_genomes_project 2 156246176 156270706 + MGP_CASTEiJ_P0058273 Mylk2 protein_coding protein_coding MGP_CASTEiJ_T0058255.1 MGP_CASTEiJ_G0025856.1 mouse_genomes_project 2 156091136 156103301 + MGP_CASTEiJ_P0058255 Cox4i2 protein_coding protein_coding MGP_CASTEiJ_T0058256.1 MGP_CASTEiJ_G0025856.1 mouse_genomes_project 2 156093323 156103298 + MGP_CASTEiJ_P0058256 Cox4i2 protein_coding protein_coding MGP_CASTEiJ_T0054256.1 MGP_CASTEiJ_G0024845.1 mouse_genomes_project 2 33317743 33394298 + MGP_CASTEiJ_P0054256 Cntrl protein_coding protein_coding MGP_CASTEiJ_T0054257.1 MGP_CASTEiJ_G0024845.1 mouse_genomes_project 2 33317743 33395010 + MGP_CASTEiJ_P0054257 Cntrl protein_coding protein_coding MGP_CASTEiJ_T0054258.1 MGP_CASTEiJ_G0024845.1 mouse_genomes_project 2 33317743 33343574 + MGP_CASTEiJ_P0054258 Cntrl protein_coding protein_coding MGP_CASTEiJ_T0054259.1 MGP_CASTEiJ_G0024845.1 mouse_genomes_project 2 33317870 33394610 + MGP_CASTEiJ_P0054259 Cntrl protein_coding protein_coding MGP_CASTEiJ_T0054260.1 MGP_CASTEiJ_G0024845.1 mouse_genomes_project 2 33338806 33360612 + MGP_CASTEiJ_P0054260 Cntrl protein_coding protein_coding MGP_CASTEiJ_T0054261.1 MGP_CASTEiJ_G0024845.1 mouse_genomes_project 2 33345079 33395010 + MGP_CASTEiJ_P0054261 Cntrl protein_coding protein_coding MGP_CASTEiJ_T0054262.1 MGP_CASTEiJ_G0024845.1 mouse_genomes_project 2 33345079 33373555 + MGP_CASTEiJ_P0054262 Cntrl protein_coding protein_coding MGP_CASTEiJ_T0054263.1 MGP_CASTEiJ_G0024845.1 mouse_genomes_project 2 33345103 33360612 + MGP_CASTEiJ_P0054263 Cntrl protein_coding protein_coding MGP_CASTEiJ_T0054264.1 MGP_CASTEiJ_G0024845.1 mouse_genomes_project 2 33345103 33350694 + MGP_CASTEiJ_P0054264 Cntrl protein_coding protein_coding MGP_CASTEiJ_T0054265.1 MGP_CASTEiJ_G0024845.1 mouse_genomes_project 2 33358028 33360612 + MGP_CASTEiJ_P0054265 Cntrl protein_coding protein_coding MGP_CASTEiJ_T0054266.1 MGP_CASTEiJ_G0024845.1 mouse_genomes_project 2 33373226 33379687 + MGP_CASTEiJ_P0054266 Cntrl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054267.1 MGP_CASTEiJ_G0024845.1 mouse_genomes_project 2 33375747 33380111 + Cntrl protein_coding retained_intron MGP_CASTEiJ_T0054268.1 MGP_CASTEiJ_G0024845.1 mouse_genomes_project 2 33391440 33394999 + Cntrl protein_coding retained_intron MGP_CASTEiJ_T0013417.1 MGP_CASTEiJ_G0011580.1 mouse_genomes_project 2 160302571 160303197 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057553.1 MGP_CASTEiJ_G0025678.1 mouse_genomes_project 2 132704060 132709245 - MGP_CASTEiJ_P0057553 Idh3b protein_coding protein_coding MGP_CASTEiJ_T0057554.1 MGP_CASTEiJ_G0025678.1 mouse_genomes_project 2 132704064 132705289 - MGP_CASTEiJ_P0057554 Idh3b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057555.1 MGP_CASTEiJ_G0025678.1 mouse_genomes_project 2 132706876 132709132 - Idh3b protein_coding retained_intron MGP_CASTEiJ_T0057556.1 MGP_CASTEiJ_G0025678.1 mouse_genomes_project 2 132708360 132709113 - Idh3b protein_coding retained_intron MGP_CASTEiJ_T0102241.1 MGP_CASTEiJ_G0038966.1 mouse_genomes_project 2 89010395 89011331 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0055691.1 MGP_CASTEiJ_G0025192.1 mouse_genomes_project 2 87908815 87909760 + MGP_CASTEiJ_P0055691 Olfr1121 protein_coding protein_coding MGP_CASTEiJ_T0010191.1 MGP_CASTEiJ_G0008379.1 mouse_genomes_project 2 162481631 162481689 + Mir3474 miRNA miRNA MGP_CASTEiJ_T0003878.1 MGP_CASTEiJ_G0003465.1 mouse_genomes_project 2 71914990 71918575 - Rapgef4os3 antisense antisense MGP_CASTEiJ_T0054361.1 MGP_CASTEiJ_G0024872.1 mouse_genomes_project 2 35041494 35042433 + MGP_CASTEiJ_P0054361 Olfr350 protein_coding protein_coding MGP_CASTEiJ_T0007149.1 MGP_CASTEiJ_G0005876.1 mouse_genomes_project 2 138352481 138357177 + Platr3 lincRNA lincRNA MGP_CASTEiJ_T0057354.1 MGP_CASTEiJ_G0025628.1 mouse_genomes_project 2 129339254 129359001 + Blvra protein_coding retained_intron MGP_CASTEiJ_T0057355.1 MGP_CASTEiJ_G0025628.1 mouse_genomes_project 2 129339256 129369681 + MGP_CASTEiJ_P0057355 Blvra protein_coding protein_coding MGP_CASTEiJ_T0057356.1 MGP_CASTEiJ_G0025628.1 mouse_genomes_project 2 129339268 129361522 + MGP_CASTEiJ_P0057356 Blvra protein_coding protein_coding MGP_CASTEiJ_T0057357.1 MGP_CASTEiJ_G0025628.1 mouse_genomes_project 2 129339282 129358510 + MGP_CASTEiJ_P0057357 Blvra protein_coding protein_coding MGP_CASTEiJ_T0057358.1 MGP_CASTEiJ_G0025628.1 mouse_genomes_project 2 129340971 129369684 + MGP_CASTEiJ_P0057358 Blvra protein_coding unknown_likely_coding MGP_CASTEiJ_T0057359.1 MGP_CASTEiJ_G0025628.1 mouse_genomes_project 2 129349874 129364682 + MGP_CASTEiJ_P0057359 Blvra protein_coding protein_coding MGP_CASTEiJ_T0059383.1 MGP_CASTEiJ_G0026097.1 mouse_genomes_project 2 172525664 172549875 + MGP_CASTEiJ_P0059383 Pard6b protein_coding protein_coding MGP_CASTEiJ_T0010183.1 MGP_CASTEiJ_G0008371.1 mouse_genomes_project 2 155247258 155247347 - Mir1953 miRNA miRNA MGP_CASTEiJ_T0013255.1 MGP_CASTEiJ_G0011418.1 mouse_genomes_project 2 96752325 96752464 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004010.1 MGP_CASTEiJ_G0003556.1 mouse_genomes_project 2 159193181 159194092 - Gm14257 antisense antisense MGP_CASTEiJ_T0058191.1 MGP_CASTEiJ_G0025827.1 mouse_genomes_project 2 155249127 155259966 - MGP_CASTEiJ_P0058191 Fam110a protein_coding protein_coding MGP_CASTEiJ_T0058192.1 MGP_CASTEiJ_G0025827.1 mouse_genomes_project 2 155249127 155253680 - MGP_CASTEiJ_P0058192 Fam110a protein_coding protein_coding MGP_CASTEiJ_T0058193.1 MGP_CASTEiJ_G0025827.1 mouse_genomes_project 2 155249127 155253711 - MGP_CASTEiJ_P0058193 Fam110a protein_coding protein_coding MGP_CASTEiJ_T0058194.1 MGP_CASTEiJ_G0025827.1 mouse_genomes_project 2 155249466 155253139 - MGP_CASTEiJ_P0058194 Fam110a protein_coding protein_coding MGP_CASTEiJ_T0056255.1 MGP_CASTEiJ_G0025376.1 mouse_genomes_project 2 102723020 102734264 - MGP_CASTEiJ_P0056255 Rag1 protein_coding protein_coding MGP_CASTEiJ_T0057565.1 MGP_CASTEiJ_G0025681.1 mouse_genomes_project 2 132835742 132837913 + MGP_CASTEiJ_P0057565 Gm28372 protein_coding protein_coding MGP_CASTEiJ_T0059228.1 MGP_CASTEiJ_G0026068.1 mouse_genomes_project 2 169597609 169609647 - MGP_CASTEiJ_P0059228 Zfp334 protein_coding protein_coding MGP_CASTEiJ_T0055714.1 MGP_CASTEiJ_G0025206.1 mouse_genomes_project 2 88181681 88182608 - MGP_CASTEiJ_P0055714 Olfr1132 protein_coding protein_coding MGP_CASTEiJ_T0013189.1 MGP_CASTEiJ_G0011352.1 mouse_genomes_project 2 74495586 74497366 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058143.1 MGP_CASTEiJ_G0025815.1 mouse_genomes_project 2 154248348 154268268 - MGP_CASTEiJ_P0058143 Gm6741 protein_coding protein_coding MGP_CASTEiJ_T0058145.1 MGP_CASTEiJ_G0025815.1 mouse_genomes_project 2 154249418 154268232 - Gm6741 protein_coding processed_transcript MGP_CASTEiJ_T0099625.1 MGP_CASTEiJ_G0036538.1 mouse_genomes_project 2 22877938 22878033 + Gm25220 snRNA snRNA MGP_CASTEiJ_T0054301.1 MGP_CASTEiJ_G0024852.1 mouse_genomes_project 2 33805715 33981773 + MGP_CASTEiJ_P0054301 Dab2ip protein_coding protein_coding MGP_CASTEiJ_T0054302.1 MGP_CASTEiJ_G0024852.1 mouse_genomes_project 2 33828644 33981771 + MGP_CASTEiJ_P0054302 Dab2ip protein_coding protein_coding MGP_CASTEiJ_T0054303.1 MGP_CASTEiJ_G0024852.1 mouse_genomes_project 2 33830422 33981771 + MGP_CASTEiJ_P0054303 Dab2ip protein_coding protein_coding MGP_CASTEiJ_T0054304.1 MGP_CASTEiJ_G0024852.1 mouse_genomes_project 2 33870601 33981771 + MGP_CASTEiJ_P0054304 Dab2ip protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054305.1 MGP_CASTEiJ_G0024852.1 mouse_genomes_project 2 33870741 34000091 + MGP_CASTEiJ_P0054305 Dab2ip protein_coding unknown_likely_coding MGP_CASTEiJ_T0054306.1 MGP_CASTEiJ_G0024852.1 mouse_genomes_project 2 33870777 33981771 + MGP_CASTEiJ_P0054306 Dab2ip protein_coding protein_coding MGP_CASTEiJ_T0054307.1 MGP_CASTEiJ_G0024852.1 mouse_genomes_project 2 33870777 33981775 + MGP_CASTEiJ_P0054307 Dab2ip protein_coding protein_coding MGP_CASTEiJ_T0054308.1 MGP_CASTEiJ_G0024852.1 mouse_genomes_project 2 33910250 33959267 + Dab2ip protein_coding retained_intron MGP_CASTEiJ_T0054309.1 MGP_CASTEiJ_G0024852.1 mouse_genomes_project 2 33910423 33981773 + MGP_CASTEiJ_P0054309 Dab2ip protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054310.1 MGP_CASTEiJ_G0024852.1 mouse_genomes_project 2 33910501 33960188 + Dab2ip protein_coding processed_transcript MGP_CASTEiJ_T0054311.1 MGP_CASTEiJ_G0024852.1 mouse_genomes_project 2 33942038 33981771 + MGP_CASTEiJ_P0054311 Dab2ip protein_coding protein_coding MGP_CASTEiJ_T0054312.1 MGP_CASTEiJ_G0024852.1 mouse_genomes_project 2 33942376 33979728 + MGP_CASTEiJ_P0054312 Dab2ip protein_coding protein_coding MGP_CASTEiJ_T0054313.1 MGP_CASTEiJ_G0024852.1 mouse_genomes_project 2 33960581 33981773 + MGP_CASTEiJ_P0054313 Dab2ip protein_coding protein_coding MGP_CASTEiJ_T0053590.1 MGP_CASTEiJ_G0024749.1 mouse_genomes_project 2 27893104 27896546 + MGP_CASTEiJ_P0053590 Pkn3 protein_coding protein_coding MGP_CASTEiJ_T0053591.1 MGP_CASTEiJ_G0024749.1 mouse_genomes_project 2 27893163 27909946 + Pkn3 protein_coding retained_intron MGP_CASTEiJ_T0053592.1 MGP_CASTEiJ_G0024749.1 mouse_genomes_project 2 27893633 27895403 + MGP_CASTEiJ_P0053592 Pkn3 protein_coding protein_coding MGP_CASTEiJ_T0053593.1 MGP_CASTEiJ_G0024749.1 mouse_genomes_project 2 27894004 27909952 + MGP_CASTEiJ_P0053593 Pkn3 protein_coding protein_coding MGP_CASTEiJ_T0053594.1 MGP_CASTEiJ_G0024749.1 mouse_genomes_project 2 27894118 27900938 + Pkn3 protein_coding retained_intron MGP_CASTEiJ_T0053595.1 MGP_CASTEiJ_G0024749.1 mouse_genomes_project 2 27894174 27909955 + Pkn3 protein_coding retained_intron MGP_CASTEiJ_T0053596.1 MGP_CASTEiJ_G0024749.1 mouse_genomes_project 2 27896271 27898642 + Pkn3 protein_coding retained_intron MGP_CASTEiJ_T0053597.1 MGP_CASTEiJ_G0024749.1 mouse_genomes_project 2 27900052 27904267 + Pkn3 protein_coding retained_intron MGP_CASTEiJ_T0053516.1 MGP_CASTEiJ_G0024741.1 mouse_genomes_project 2 27579793 27591405 + MGP_CASTEiJ_P0053516 Coq4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053517.1 MGP_CASTEiJ_G0024741.1 mouse_genomes_project 2 27580520 27590061 + MGP_CASTEiJ_P0053517 Coq4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053518.1 MGP_CASTEiJ_G0024741.1 mouse_genomes_project 2 27580559 27591206 + MGP_CASTEiJ_P0053518 Coq4 protein_coding protein_coding MGP_CASTEiJ_T0053519.1 MGP_CASTEiJ_G0024741.1 mouse_genomes_project 2 27580571 27589461 + MGP_CASTEiJ_P0053519 Coq4 protein_coding protein_coding MGP_CASTEiJ_T0053520.1 MGP_CASTEiJ_G0024741.1 mouse_genomes_project 2 27582279 27582951 + Coq4 protein_coding retained_intron MGP_CASTEiJ_T0053521.1 MGP_CASTEiJ_G0024741.1 mouse_genomes_project 2 27589023 27590445 + Coq4 protein_coding retained_intron MGP_CASTEiJ_T0056596.1 MGP_CASTEiJ_G0025477.1 mouse_genomes_project 2 114826533 114842209 + MGP_CASTEiJ_P0056596 Tmco5b protein_coding protein_coding MGP_CASTEiJ_T0057872.1 MGP_CASTEiJ_G0025745.1 mouse_genomes_project 2 142518445 142606160 + MGP_CASTEiJ_P0057872 Ism1 protein_coding protein_coding MGP_CASTEiJ_T0057873.1 MGP_CASTEiJ_G0025745.1 mouse_genomes_project 2 142518445 142606161 + MGP_CASTEiJ_P0057873 Ism1 protein_coding protein_coding MGP_CASTEiJ_T0007249.1 MGP_CASTEiJ_G0005961.1 mouse_genomes_project 2 183653209 183661011 - Gm14340 lincRNA lincRNA MGP_CASTEiJ_T0013268.1 MGP_CASTEiJ_G0011431.1 mouse_genomes_project 2 102649975 102650186 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056108.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93340044 93346023 - MGP_CASTEiJ_P0056108 Gyltl1b protein_coding protein_coding MGP_CASTEiJ_T0056109.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93340044 93345952 - MGP_CASTEiJ_P0056109 Gyltl1b protein_coding protein_coding MGP_CASTEiJ_T0056110.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93340045 93346002 - Gyltl1b protein_coding retained_intron MGP_CASTEiJ_T0056111.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93340049 93345984 - MGP_CASTEiJ_P0056111 Gyltl1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056112.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93340050 93345977 - MGP_CASTEiJ_P0056112 Gyltl1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056113.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93340058 93345994 - MGP_CASTEiJ_P0056113 Gyltl1b protein_coding protein_coding MGP_CASTEiJ_T0056114.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93340058 93346932 - MGP_CASTEiJ_P0056114 Gyltl1b protein_coding protein_coding MGP_CASTEiJ_T0056115.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93340069 93345999 - MGP_CASTEiJ_P0056115 Gyltl1b protein_coding protein_coding MGP_CASTEiJ_T0056116.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93340790 93341520 - Gyltl1b protein_coding retained_intron MGP_CASTEiJ_T0056117.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93340973 93341775 - Gyltl1b protein_coding retained_intron MGP_CASTEiJ_T0056118.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93342016 93344438 - Gyltl1b protein_coding retained_intron MGP_CASTEiJ_T0056119.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93342312 93344625 - Gyltl1b protein_coding processed_transcript MGP_CASTEiJ_T0056120.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93342385 93345035 - Gyltl1b protein_coding retained_intron MGP_CASTEiJ_T0056121.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93343032 93345999 - Gyltl1b protein_coding retained_intron MGP_CASTEiJ_T0056122.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93344669 93345984 - Gyltl1b protein_coding retained_intron MGP_CASTEiJ_T0056123.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93344896 93349883 - MGP_CASTEiJ_P0056123 Gyltl1b protein_coding protein_coding MGP_CASTEiJ_T0056124.1 MGP_CASTEiJ_G0025350.1 mouse_genomes_project 2 93344946 93346910 - Gyltl1b protein_coding retained_intron MGP_CASTEiJ_T0101572.1 MGP_CASTEiJ_G0038445.1 mouse_genomes_project 2 106868286 106868676 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0003838.1 MGP_CASTEiJ_G0003435.1 mouse_genomes_project 2 36605679 36606639 - Gm27197 antisense antisense MGP_CASTEiJ_T0058236.1 MGP_CASTEiJ_G0025846.1 mouse_genomes_project 2 155889221 155889422 + MGP_CASTEiJ_P0058236 Gm17416 protein_coding protein_coding MGP_CASTEiJ_T0056563.1 MGP_CASTEiJ_G0025465.1 mouse_genomes_project 2 113564104 113565043 - MGP_CASTEiJ_P0056563 Olfr1314 protein_coding protein_coding MGP_CASTEiJ_T0006948.1 MGP_CASTEiJ_G0005717.1 mouse_genomes_project 2 6376247 6384075 + 1700061F12Rik lincRNA lincRNA MGP_CASTEiJ_T0053430.1 MGP_CASTEiJ_G0024726.1 mouse_genomes_project 2 26372882 26405387 + MGP_CASTEiJ_P0053430 Tsc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053431.1 MGP_CASTEiJ_G0024726.1 mouse_genomes_project 2 26372891 26425067 + MGP_CASTEiJ_P0053431 Tsc1 protein_coding protein_coding MGP_CASTEiJ_T0053432.1 MGP_CASTEiJ_G0024726.1 mouse_genomes_project 2 26372895 26422456 + MGP_CASTEiJ_P0053432 Tsc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053433.1 MGP_CASTEiJ_G0024726.1 mouse_genomes_project 2 26372895 26425067 + MGP_CASTEiJ_P0053433 Tsc1 protein_coding protein_coding MGP_CASTEiJ_T0053434.1 MGP_CASTEiJ_G0024726.1 mouse_genomes_project 2 26372897 26425067 + MGP_CASTEiJ_P0053434 Tsc1 protein_coding protein_coding MGP_CASTEiJ_T0053435.1 MGP_CASTEiJ_G0024726.1 mouse_genomes_project 2 26372904 26406633 + Tsc1 protein_coding retained_intron MGP_CASTEiJ_T0053436.1 MGP_CASTEiJ_G0024726.1 mouse_genomes_project 2 26372908 26399004 + Tsc1 protein_coding retained_intron MGP_CASTEiJ_T0053437.1 MGP_CASTEiJ_G0024726.1 mouse_genomes_project 2 26389647 26425067 + MGP_CASTEiJ_P0053437 Tsc1 protein_coding protein_coding MGP_CASTEiJ_T0053438.1 MGP_CASTEiJ_G0024726.1 mouse_genomes_project 2 26394460 26397010 + Tsc1 protein_coding retained_intron MGP_CASTEiJ_T0053439.1 MGP_CASTEiJ_G0024726.1 mouse_genomes_project 2 26403900 26406071 + Tsc1 protein_coding retained_intron MGP_CASTEiJ_T0053440.1 MGP_CASTEiJ_G0024726.1 mouse_genomes_project 2 26405157 26406213 + Tsc1 protein_coding retained_intron MGP_CASTEiJ_T0057478.1 MGP_CASTEiJ_G0025660.1 mouse_genomes_project 2 131336832 131400916 + MGP_CASTEiJ_P0057478 Zc3h6 protein_coding protein_coding MGP_CASTEiJ_T0057479.1 MGP_CASTEiJ_G0025660.1 mouse_genomes_project 2 131336839 131368169 + MGP_CASTEiJ_P0057479 Zc3h6 protein_coding protein_coding MGP_CASTEiJ_T0054351.1 MGP_CASTEiJ_G0024863.1 mouse_genomes_project 2 34701122 34702064 - MGP_CASTEiJ_P0054351 Olfr341 protein_coding protein_coding MGP_CASTEiJ_T0055765.1 MGP_CASTEiJ_G0025254.1 mouse_genomes_project 2 89582259 89583102 + MGP_CASTEiJ_P0055765 Olfr1204 protein_coding protein_coding MGP_CASTEiJ_T0100874.1 MGP_CASTEiJ_G0037787.1 mouse_genomes_project 2 48117170 48117291 - Gm25215 snoRNA snoRNA MGP_CASTEiJ_T0059096.1 MGP_CASTEiJ_G0026041.1 mouse_genomes_project 2 168825862 168838003 - MGP_CASTEiJ_P0059096 Wfdc11 protein_coding protein_coding MGP_CASTEiJ_T0059097.1 MGP_CASTEiJ_G0026041.1 mouse_genomes_project 2 168826005 168828233 - MGP_CASTEiJ_P0059097 Wfdc11 protein_coding protein_coding MGP_CASTEiJ_T0011191.1 MGP_CASTEiJ_G0009379.1 mouse_genomes_project 2 162321079 162321165 + Gm24379 misc_RNA misc_RNA MGP_CASTEiJ_T0003885.1 MGP_CASTEiJ_G0003469.1 mouse_genomes_project 2 73201310 73208472 + Gm13707 antisense antisense MGP_CASTEiJ_T0059196.1 MGP_CASTEiJ_G0026065.1 mouse_genomes_project 2 169490663 169491953 - Slc35c2 protein_coding retained_intron MGP_CASTEiJ_T0059197.1 MGP_CASTEiJ_G0026065.1 mouse_genomes_project 2 169490663 169503805 - MGP_CASTEiJ_P0059197 Slc35c2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059198.1 MGP_CASTEiJ_G0026065.1 mouse_genomes_project 2 169490663 169503736 - MGP_CASTEiJ_P0059198 Slc35c2 protein_coding protein_coding MGP_CASTEiJ_T0059199.1 MGP_CASTEiJ_G0026065.1 mouse_genomes_project 2 169490663 169503808 - MGP_CASTEiJ_P0059199 Slc35c2 protein_coding protein_coding MGP_CASTEiJ_T0059200.1 MGP_CASTEiJ_G0026065.1 mouse_genomes_project 2 169490663 169503850 - MGP_CASTEiJ_P0059200 Slc35c2 protein_coding protein_coding MGP_CASTEiJ_T0059201.1 MGP_CASTEiJ_G0026065.1 mouse_genomes_project 2 169490663 169503736 - MGP_CASTEiJ_P0059201 Slc35c2 protein_coding protein_coding MGP_CASTEiJ_T0059202.1 MGP_CASTEiJ_G0026065.1 mouse_genomes_project 2 169491563 169496268 - Slc35c2 protein_coding retained_intron MGP_CASTEiJ_T0059203.1 MGP_CASTEiJ_G0026065.1 mouse_genomes_project 2 169492443 169497394 - MGP_CASTEiJ_P0059203 Slc35c2 protein_coding protein_coding MGP_CASTEiJ_T0059204.1 MGP_CASTEiJ_G0026065.1 mouse_genomes_project 2 169492479 169497626 - MGP_CASTEiJ_P0059204 Slc35c2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059205.1 MGP_CASTEiJ_G0026065.1 mouse_genomes_project 2 169494672 169497626 - MGP_CASTEiJ_P0059205 Slc35c2 protein_coding protein_coding MGP_CASTEiJ_T0059206.1 MGP_CASTEiJ_G0026065.1 mouse_genomes_project 2 169494841 169503816 - MGP_CASTEiJ_P0059206 Slc35c2 protein_coding protein_coding MGP_CASTEiJ_T0059207.1 MGP_CASTEiJ_G0026065.1 mouse_genomes_project 2 169494841 169503817 - MGP_CASTEiJ_P0059207 Slc35c2 protein_coding protein_coding MGP_CASTEiJ_T0059208.1 MGP_CASTEiJ_G0026065.1 mouse_genomes_project 2 169494929 169500571 - MGP_CASTEiJ_P0059208 Slc35c2 protein_coding protein_coding MGP_CASTEiJ_T0059209.1 MGP_CASTEiJ_G0026065.1 mouse_genomes_project 2 169494934 169503808 - MGP_CASTEiJ_P0059209 Slc35c2 protein_coding protein_coding MGP_CASTEiJ_T0059210.1 MGP_CASTEiJ_G0026065.1 mouse_genomes_project 2 169495595 169503819 - Slc35c2 protein_coding retained_intron MGP_CASTEiJ_T0059211.1 MGP_CASTEiJ_G0026065.1 mouse_genomes_project 2 169496905 169503753 - MGP_CASTEiJ_P0059211 Slc35c2 protein_coding protein_coding MGP_CASTEiJ_T0058211.1 MGP_CASTEiJ_G0025834.1 mouse_genomes_project 2 155612996 155621552 - Rbck1 protein_coding retained_intron MGP_CASTEiJ_T0058212.1 MGP_CASTEiJ_G0025834.1 mouse_genomes_project 2 155612996 155631346 - MGP_CASTEiJ_P0058212 Rbck1 protein_coding protein_coding MGP_CASTEiJ_T0058213.1 MGP_CASTEiJ_G0025834.1 mouse_genomes_project 2 155612996 155631105 - MGP_CASTEiJ_P0058213 Rbck1 protein_coding protein_coding MGP_CASTEiJ_T0058214.1 MGP_CASTEiJ_G0025834.1 mouse_genomes_project 2 155616875 155622053 - Rbck1 protein_coding retained_intron MGP_CASTEiJ_T0058215.1 MGP_CASTEiJ_G0025834.1 mouse_genomes_project 2 155617343 155622919 - MGP_CASTEiJ_P0058215 Rbck1 protein_coding protein_coding MGP_CASTEiJ_T0058216.1 MGP_CASTEiJ_G0025834.1 mouse_genomes_project 2 155621492 155623171 - Rbck1 protein_coding retained_intron MGP_CASTEiJ_T0058217.1 MGP_CASTEiJ_G0025834.1 mouse_genomes_project 2 155623094 155626448 - Rbck1 protein_coding processed_transcript MGP_CASTEiJ_T0058218.1 MGP_CASTEiJ_G0025834.1 mouse_genomes_project 2 155624957 155631077 - Rbck1 protein_coding processed_transcript MGP_CASTEiJ_T0053015.1 MGP_CASTEiJ_G0024645.1 mouse_genomes_project 2 23007753 23009592 + Clic3 protein_coding processed_transcript MGP_CASTEiJ_T0053016.1 MGP_CASTEiJ_G0024645.1 mouse_genomes_project 2 23007753 23009692 + MGP_CASTEiJ_P0053016 Clic3 protein_coding protein_coding MGP_CASTEiJ_T0053017.1 MGP_CASTEiJ_G0024645.1 mouse_genomes_project 2 23007764 23009692 + MGP_CASTEiJ_P0053017 Clic3 protein_coding protein_coding MGP_CASTEiJ_T0053018.1 MGP_CASTEiJ_G0024645.1 mouse_genomes_project 2 23007806 23009692 + Clic3 protein_coding processed_transcript MGP_CASTEiJ_T0053019.1 MGP_CASTEiJ_G0024645.1 mouse_genomes_project 2 23007812 23009599 + Clic3 protein_coding processed_transcript MGP_CASTEiJ_T0053020.1 MGP_CASTEiJ_G0024645.1 mouse_genomes_project 2 23008551 23009131 + Clic3 protein_coding processed_transcript MGP_CASTEiJ_T0013262.1 MGP_CASTEiJ_G0011425.1 mouse_genomes_project 2 99745497 99745822 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057964.1 MGP_CASTEiJ_G0025767.1 mouse_genomes_project 2 147587043 147590004 + Polr3f protein_coding processed_transcript MGP_CASTEiJ_T0057965.1 MGP_CASTEiJ_G0025767.1 mouse_genomes_project 2 147587081 147596206 + Polr3f protein_coding processed_transcript MGP_CASTEiJ_T0057966.1 MGP_CASTEiJ_G0025767.1 mouse_genomes_project 2 147587165 147600206 + MGP_CASTEiJ_P0057966 Polr3f protein_coding protein_coding MGP_CASTEiJ_T0057967.1 MGP_CASTEiJ_G0025767.1 mouse_genomes_project 2 147591640 147600311 + Polr3f protein_coding processed_transcript MGP_CASTEiJ_T0057968.1 MGP_CASTEiJ_G0025767.1 mouse_genomes_project 2 147597456 147598141 + Polr3f protein_coding processed_transcript MGP_CASTEiJ_T0057969.1 MGP_CASTEiJ_G0025767.1 mouse_genomes_project 2 147597691 147600411 + Polr3f protein_coding processed_transcript MGP_CASTEiJ_T0003877.1 MGP_CASTEiJ_G0003464.1 mouse_genomes_project 2 71894486 71902223 - Rapgef4os2 antisense antisense MGP_CASTEiJ_T0054343.1 MGP_CASTEiJ_G0024859.1 mouse_genomes_project 2 34494964 34517896 + MGP_CASTEiJ_P0054343 Ptgs1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054344.1 MGP_CASTEiJ_G0024859.1 mouse_genomes_project 2 34498040 34505286 + Ptgs1 protein_coding processed_transcript MGP_CASTEiJ_T0054345.1 MGP_CASTEiJ_G0024859.1 mouse_genomes_project 2 34503470 34518815 + Ptgs1 protein_coding processed_transcript MGP_CASTEiJ_T0054346.1 MGP_CASTEiJ_G0024859.1 mouse_genomes_project 2 34507926 34508682 + Ptgs1 protein_coding retained_intron MGP_CASTEiJ_T0054347.1 MGP_CASTEiJ_G0024859.1 mouse_genomes_project 2 34509694 34512408 + Ptgs1 protein_coding retained_intron MGP_CASTEiJ_T0000999.1 MGP_CASTEiJ_G0000935.1 mouse_genomes_project 2 10461716 10463619 - TEC TEC MGP_CASTEiJ_T0056417.1 MGP_CASTEiJ_G0025410.1 mouse_genomes_project 2 106298791 106306459 - Eif3m protein_coding retained_intron MGP_CASTEiJ_T0056418.1 MGP_CASTEiJ_G0025410.1 mouse_genomes_project 2 106298791 106316250 - MGP_CASTEiJ_P0056418 Eif3m protein_coding protein_coding MGP_CASTEiJ_T0056419.1 MGP_CASTEiJ_G0025410.1 mouse_genomes_project 2 106298794 106306012 - MGP_CASTEiJ_P0056419 Eif3m protein_coding protein_coding MGP_CASTEiJ_T0056420.1 MGP_CASTEiJ_G0025410.1 mouse_genomes_project 2 106298824 106316213 - MGP_CASTEiJ_P0056420 Eif3m protein_coding protein_coding MGP_CASTEiJ_T0007056.1 MGP_CASTEiJ_G0005802.1 mouse_genomes_project 2 75316115 75324098 + Gm13658 lincRNA lincRNA MGP_CASTEiJ_T0098574.1 MGP_CASTEiJ_G0035505.1 mouse_genomes_project 2 105524430 105524543 + Gm25554 rRNA rRNA MGP_CASTEiJ_T0013423.1 MGP_CASTEiJ_G0011586.1 mouse_genomes_project 2 160899591 160899951 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099675.1 MGP_CASTEiJ_G0036588.1 mouse_genomes_project 2 183519223 183519330 + Gm22502 snRNA snRNA MGP_CASTEiJ_T0016990.1 MGP_CASTEiJ_G0014710.1 mouse_genomes_project 2 15471571 15473985 - 1810059C17Rik processed_transcript processed_transcript MGP_CASTEiJ_T0004057.1 MGP_CASTEiJ_G0003592.1 mouse_genomes_project 2 179175450 179234587 - Gm10714 antisense antisense MGP_CASTEiJ_T0004058.1 MGP_CASTEiJ_G0003592.1 mouse_genomes_project 2 179175972 179176305 - Gm10714 antisense antisense MGP_CASTEiJ_T0056253.1 MGP_CASTEiJ_G0025375.1 mouse_genomes_project 2 102708173 102717297 + MGP_CASTEiJ_P0056253 Rag2 protein_coding protein_coding MGP_CASTEiJ_T0056254.1 MGP_CASTEiJ_G0025375.1 mouse_genomes_project 2 102708201 102715827 + MGP_CASTEiJ_P0056254 Rag2 protein_coding protein_coding MGP_CASTEiJ_T0056528.1 MGP_CASTEiJ_G0025433.1 mouse_genomes_project 2 112169416 112188708 + MGP_CASTEiJ_P0056528 Muc15 protein_coding protein_coding MGP_CASTEiJ_T0056529.1 MGP_CASTEiJ_G0025433.1 mouse_genomes_project 2 112169687 112188708 + MGP_CASTEiJ_P0056529 Muc15 protein_coding protein_coding MGP_CASTEiJ_T0056530.1 MGP_CASTEiJ_G0025433.1 mouse_genomes_project 2 112169724 112186761 + MGP_CASTEiJ_P0056530 Muc15 protein_coding protein_coding MGP_CASTEiJ_T0101570.1 MGP_CASTEiJ_G0038443.1 mouse_genomes_project 2 51633920 51634305 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0058233.1 MGP_CASTEiJ_G0025843.1 mouse_genomes_project 2 155823926 155827646 - MGP_CASTEiJ_P0058233 Defb26 protein_coding protein_coding MGP_CASTEiJ_T0057750.1 MGP_CASTEiJ_G0025720.1 mouse_genomes_project 2 134816556 134820673 - MGP_CASTEiJ_P0057750 Pcna-ps2 protein_coding protein_coding MGP_CASTEiJ_T0057751.1 MGP_CASTEiJ_G0025720.1 mouse_genomes_project 2 134817267 134819955 - Pcna-ps2 protein_coding processed_transcript MGP_CASTEiJ_T0057752.1 MGP_CASTEiJ_G0025720.1 mouse_genomes_project 2 134818688 134820326 - Pcna-ps2 protein_coding retained_intron MGP_CASTEiJ_T0057753.1 MGP_CASTEiJ_G0025720.1 mouse_genomes_project 2 134818788 134819961 - Pcna-ps2 protein_coding retained_intron MGP_CASTEiJ_T0052895.1 MGP_CASTEiJ_G0024623.1 mouse_genomes_project 2 22754449 22756708 - MGP_CASTEiJ_P0052895 Tubb4b protein_coding protein_coding MGP_CASTEiJ_T0052896.1 MGP_CASTEiJ_G0024623.1 mouse_genomes_project 2 22755529 22756660 - Tubb4b protein_coding processed_transcript MGP_CASTEiJ_T0007104.1 MGP_CASTEiJ_G0005841.1 mouse_genomes_project 2 112489467 112495793 - Gm13942 lincRNA lincRNA MGP_CASTEiJ_T0099644.1 MGP_CASTEiJ_G0036557.1 mouse_genomes_project 2 81160728 81160835 - Gm23452 snRNA snRNA MGP_CASTEiJ_T0017043.1 MGP_CASTEiJ_G0014744.1 mouse_genomes_project 2 75592278 75597505 + E030042O20Rik processed_transcript processed_transcript MGP_CASTEiJ_T0058531.1 MGP_CASTEiJ_G0025922.1 mouse_genomes_project 2 159393487 159439038 + MGP_CASTEiJ_P0058531 Mmp24 protein_coding protein_coding MGP_CASTEiJ_T0058532.1 MGP_CASTEiJ_G0025922.1 mouse_genomes_project 2 159427781 159431047 + Mmp24 protein_coding retained_intron MGP_CASTEiJ_T0013004.1 MGP_CASTEiJ_G0011167.1 mouse_genomes_project 2 673517 674587 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013014.1 MGP_CASTEiJ_G0011177.1 mouse_genomes_project 2 3225987 3228040 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056720.1 MGP_CASTEiJ_G0025506.1 mouse_genomes_project 2 120625791 120648858 + MGP_CASTEiJ_P0056720 Knstrn protein_coding protein_coding MGP_CASTEiJ_T0056721.1 MGP_CASTEiJ_G0025506.1 mouse_genomes_project 2 120626020 120645406 + MGP_CASTEiJ_P0056721 Knstrn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056722.1 MGP_CASTEiJ_G0025506.1 mouse_genomes_project 2 120626020 120645338 + MGP_CASTEiJ_P0056722 Knstrn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056723.1 MGP_CASTEiJ_G0025506.1 mouse_genomes_project 2 120626021 120645315 + MGP_CASTEiJ_P0056723 Knstrn protein_coding protein_coding MGP_CASTEiJ_T0056724.1 MGP_CASTEiJ_G0025506.1 mouse_genomes_project 2 120626042 120645799 + MGP_CASTEiJ_P0056724 Knstrn protein_coding protein_coding MGP_CASTEiJ_T0056725.1 MGP_CASTEiJ_G0025506.1 mouse_genomes_project 2 120626065 120642191 + MGP_CASTEiJ_P0056725 Knstrn protein_coding protein_coding MGP_CASTEiJ_T0056726.1 MGP_CASTEiJ_G0025506.1 mouse_genomes_project 2 120626084 120645225 + MGP_CASTEiJ_P0056726 Knstrn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056727.1 MGP_CASTEiJ_G0025506.1 mouse_genomes_project 2 120642792 120648305 + MGP_CASTEiJ_P0056727 Knstrn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056728.1 MGP_CASTEiJ_G0025506.1 mouse_genomes_project 2 120645231 120665959 + MGP_CASTEiJ_P0056728 Knstrn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013109.1 MGP_CASTEiJ_G0011272.1 mouse_genomes_project 2 39293154 39294115 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003862.1 MGP_CASTEiJ_G0003453.1 mouse_genomes_project 2 65150790 65161391 - Gm13617 antisense antisense MGP_CASTEiJ_T0059046.1 MGP_CASTEiJ_G0026023.1 mouse_genomes_project 2 168447083 168448763 + MGP_CASTEiJ_P0059046 Svs6 protein_coding protein_coding MGP_CASTEiJ_T0054349.1 MGP_CASTEiJ_G0024861.1 mouse_genomes_project 2 34654330 34655260 + MGP_CASTEiJ_P0054349 Olfr339 protein_coding protein_coding MGP_CASTEiJ_T0056331.1 MGP_CASTEiJ_G0025392.1 mouse_genomes_project 2 104915227 104957175 - MGP_CASTEiJ_P0056331 Nat10 protein_coding protein_coding MGP_CASTEiJ_T0056332.1 MGP_CASTEiJ_G0025392.1 mouse_genomes_project 2 104915231 104957146 - Nat10 protein_coding retained_intron MGP_CASTEiJ_T0056333.1 MGP_CASTEiJ_G0025392.1 mouse_genomes_project 2 104915231 104957146 - Nat10 protein_coding retained_intron MGP_CASTEiJ_T0056334.1 MGP_CASTEiJ_G0025392.1 mouse_genomes_project 2 104915231 104957102 - Nat10 protein_coding retained_intron MGP_CASTEiJ_T0056335.1 MGP_CASTEiJ_G0025392.1 mouse_genomes_project 2 104915632 104918395 - Nat10 protein_coding retained_intron MGP_CASTEiJ_T0056336.1 MGP_CASTEiJ_G0025392.1 mouse_genomes_project 2 104915898 104957109 - Nat10 protein_coding retained_intron MGP_CASTEiJ_T0056337.1 MGP_CASTEiJ_G0025392.1 mouse_genomes_project 2 104925795 104928457 - Nat10 protein_coding retained_intron MGP_CASTEiJ_T0056338.1 MGP_CASTEiJ_G0025392.1 mouse_genomes_project 2 104925990 104927219 - Nat10 protein_coding retained_intron MGP_CASTEiJ_T0056339.1 MGP_CASTEiJ_G0025392.1 mouse_genomes_project 2 104928302 104938424 - Nat10 protein_coding retained_intron MGP_CASTEiJ_T0056340.1 MGP_CASTEiJ_G0025392.1 mouse_genomes_project 2 104932749 104957175 - Nat10 protein_coding retained_intron MGP_CASTEiJ_T0056341.1 MGP_CASTEiJ_G0025392.1 mouse_genomes_project 2 104945234 104956831 - MGP_CASTEiJ_P0056341 Nat10 protein_coding protein_coding MGP_CASTEiJ_T0056342.1 MGP_CASTEiJ_G0025392.1 mouse_genomes_project 2 104948023 104957166 - Nat10 protein_coding retained_intron MGP_CASTEiJ_T0056343.1 MGP_CASTEiJ_G0025392.1 mouse_genomes_project 2 104952185 104957100 - Nat10 protein_coding retained_intron MGP_CASTEiJ_T0056344.1 MGP_CASTEiJ_G0025392.1 mouse_genomes_project 2 104952322 104953495 - MGP_CASTEiJ_P0056344 Nat10 protein_coding protein_coding MGP_CASTEiJ_T0007008.1 MGP_CASTEiJ_G0005761.1 mouse_genomes_project 2 44351839 44355626 - Gm13467 lincRNA lincRNA MGP_CASTEiJ_T0098371.1 MGP_CASTEiJ_G0035302.1 mouse_genomes_project 2 91774597 91774870 + pseudogene pseudogene MGP_CASTEiJ_T0057171.1 MGP_CASTEiJ_G0025586.1 mouse_genomes_project 2 124167050 124243887 - MGP_CASTEiJ_P0057171 Patl2 protein_coding protein_coding MGP_CASTEiJ_T0003853.1 MGP_CASTEiJ_G0003446.1 mouse_genomes_project 2 59419331 59420386 + Gm13580 antisense antisense MGP_CASTEiJ_T0017021.1 MGP_CASTEiJ_G0014729.1 mouse_genomes_project 2 34469480 34471412 + Gm13429 processed_transcript processed_transcript MGP_CASTEiJ_T0017022.1 MGP_CASTEiJ_G0014729.1 mouse_genomes_project 2 34469974 34480055 + Gm13429 processed_transcript processed_transcript MGP_CASTEiJ_T0017023.1 MGP_CASTEiJ_G0014729.1 mouse_genomes_project 2 34477935 34480054 + Gm13429 processed_transcript processed_transcript MGP_CASTEiJ_T0099678.1 MGP_CASTEiJ_G0036591.1 mouse_genomes_project 2 184389442 184389605 + Gm25184 snRNA snRNA MGP_CASTEiJ_T0013338.1 MGP_CASTEiJ_G0011501.1 mouse_genomes_project 2 132502740 132504039 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010163.1 MGP_CASTEiJ_G0008351.1 mouse_genomes_project 2 117285789 117285878 + Mir1951 miRNA miRNA MGP_CASTEiJ_T0058065.1 MGP_CASTEiJ_G0025790.1 mouse_genomes_project 2 151937150 151949394 + MGP_CASTEiJ_P0058065 Gzf1 protein_coding protein_coding MGP_CASTEiJ_T0058066.1 MGP_CASTEiJ_G0025790.1 mouse_genomes_project 2 151937339 151940187 + MGP_CASTEiJ_P0058066 Gzf1 protein_coding protein_coding MGP_CASTEiJ_T0058067.1 MGP_CASTEiJ_G0025790.1 mouse_genomes_project 2 151940749 151946662 + Gzf1 protein_coding processed_transcript MGP_CASTEiJ_T0013012.1 MGP_CASTEiJ_G0011175.1 mouse_genomes_project 2 2678013 2679650 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003817.1 MGP_CASTEiJ_G0003417.1 mouse_genomes_project 2 28699956 28705779 + 4930527E20Rik antisense antisense MGP_CASTEiJ_T0055738.1 MGP_CASTEiJ_G0025229.1 mouse_genomes_project 2 88603169 88604114 - MGP_CASTEiJ_P0055738 Olfr1162 protein_coding protein_coding MGP_CASTEiJ_T0055739.1 MGP_CASTEiJ_G0025229.1 mouse_genomes_project 2 88603169 88604604 - MGP_CASTEiJ_P0055739 Olfr1162 protein_coding protein_coding MGP_CASTEiJ_T0013212.1 MGP_CASTEiJ_G0011375.1 mouse_genomes_project 2 82790604 82791195 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010086.1 MGP_CASTEiJ_G0008274.1 mouse_genomes_project 2 7754070 7754189 + Mir466l miRNA miRNA MGP_CASTEiJ_T0055936.1 MGP_CASTEiJ_G0025328.1 mouse_genomes_project 2 91983579 92001956 + MGP_CASTEiJ_P0055936 Mybpc3 protein_coding protein_coding MGP_CASTEiJ_T0055937.1 MGP_CASTEiJ_G0025328.1 mouse_genomes_project 2 91983579 92001962 + MGP_CASTEiJ_P0055937 Mybpc3 protein_coding protein_coding MGP_CASTEiJ_T0055938.1 MGP_CASTEiJ_G0025328.1 mouse_genomes_project 2 91983579 92001956 + MGP_CASTEiJ_P0055938 Mybpc3 protein_coding protein_coding MGP_CASTEiJ_T0055939.1 MGP_CASTEiJ_G0025328.1 mouse_genomes_project 2 91983604 92001963 + MGP_CASTEiJ_P0055939 Mybpc3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056737.1 MGP_CASTEiJ_G0025508.1 mouse_genomes_project 2 120710250 120726299 + MGP_CASTEiJ_P0056737 Bahd1 protein_coding protein_coding MGP_CASTEiJ_T0056738.1 MGP_CASTEiJ_G0025508.1 mouse_genomes_project 2 120711326 120734404 + MGP_CASTEiJ_P0056738 Bahd1 protein_coding protein_coding MGP_CASTEiJ_T0013356.1 MGP_CASTEiJ_G0011519.1 mouse_genomes_project 2 139147464 139148106 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059559.1 MGP_CASTEiJ_G0026144.1 mouse_genomes_project 2 179488332 179501287 - MGP_CASTEiJ_P0059559 Ctsz protein_coding protein_coding MGP_CASTEiJ_T0007016.1 MGP_CASTEiJ_G0005769.1 mouse_genomes_project 2 50231352 50257796 - 1700057H21Rik lincRNA lincRNA MGP_CASTEiJ_T0007017.1 MGP_CASTEiJ_G0005769.1 mouse_genomes_project 2 50231418 50256900 - 1700057H21Rik lincRNA lincRNA MGP_CASTEiJ_T0055689.1 MGP_CASTEiJ_G0025190.1 mouse_genomes_project 2 87839297 87841571 + MGP_CASTEiJ_P0055689 protein_coding protein_coding MGP_CASTEiJ_T0057645.1 MGP_CASTEiJ_G0025699.1 mouse_genomes_project 2 133534165 133537592 - protein_coding retained_intron MGP_CASTEiJ_T0057646.1 MGP_CASTEiJ_G0025699.1 mouse_genomes_project 2 133534391 133549390 - MGP_CASTEiJ_P0057646 protein_coding protein_coding MGP_CASTEiJ_T0057647.1 MGP_CASTEiJ_G0025699.1 mouse_genomes_project 2 133534399 133549145 - protein_coding retained_intron MGP_CASTEiJ_T0057648.1 MGP_CASTEiJ_G0025699.1 mouse_genomes_project 2 133534437 133539931 - MGP_CASTEiJ_P0057648 protein_coding protein_coding MGP_CASTEiJ_T0057649.1 MGP_CASTEiJ_G0025699.1 mouse_genomes_project 2 133534449 133549121 - MGP_CASTEiJ_P0057649 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057650.1 MGP_CASTEiJ_G0025699.1 mouse_genomes_project 2 133534683 133549390 - MGP_CASTEiJ_P0057650 protein_coding protein_coding MGP_CASTEiJ_T0057651.1 MGP_CASTEiJ_G0025699.1 mouse_genomes_project 2 133534684 133540045 - protein_coding retained_intron MGP_CASTEiJ_T0057652.1 MGP_CASTEiJ_G0025699.1 mouse_genomes_project 2 133536605 133538082 - MGP_CASTEiJ_P0057652 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057653.1 MGP_CASTEiJ_G0025699.1 mouse_genomes_project 2 133536653 133538072 - protein_coding processed_transcript MGP_CASTEiJ_T0057654.1 MGP_CASTEiJ_G0025699.1 mouse_genomes_project 2 133536784 133537615 - protein_coding processed_transcript MGP_CASTEiJ_T0057655.1 MGP_CASTEiJ_G0025699.1 mouse_genomes_project 2 133537085 133538085 - protein_coding retained_intron MGP_CASTEiJ_T0057656.1 MGP_CASTEiJ_G0025699.1 mouse_genomes_project 2 133541075 133549089 - MGP_CASTEiJ_P0057656 protein_coding protein_coding MGP_CASTEiJ_T0057657.1 MGP_CASTEiJ_G0025699.1 mouse_genomes_project 2 133545617 133549119 - protein_coding retained_intron MGP_CASTEiJ_T0013272.1 MGP_CASTEiJ_G0011435.1 mouse_genomes_project 2 103439356 103439651 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053001.1 MGP_CASTEiJ_G0024642.1 mouse_genomes_project 2 22973096 22975014 + MGP_CASTEiJ_P0053001 Fut7 protein_coding protein_coding MGP_CASTEiJ_T0053002.1 MGP_CASTEiJ_G0024642.1 mouse_genomes_project 2 22973208 22976190 + MGP_CASTEiJ_P0053002 Fut7 protein_coding protein_coding MGP_CASTEiJ_T0053003.1 MGP_CASTEiJ_G0024642.1 mouse_genomes_project 2 22973382 22976193 + MGP_CASTEiJ_P0053003 Fut7 protein_coding protein_coding MGP_CASTEiJ_T0053004.1 MGP_CASTEiJ_G0024642.1 mouse_genomes_project 2 22973523 22976193 + MGP_CASTEiJ_P0053004 Fut7 protein_coding protein_coding MGP_CASTEiJ_T0053005.1 MGP_CASTEiJ_G0024642.1 mouse_genomes_project 2 22974480 22974922 + Fut7 protein_coding processed_transcript MGP_CASTEiJ_T0017008.1 MGP_CASTEiJ_G0014721.1 mouse_genomes_project 2 27017172 27025047 - 6530402F18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017009.1 MGP_CASTEiJ_G0014721.1 mouse_genomes_project 2 27022964 27025060 - 6530402F18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0059605.1 MGP_CASTEiJ_G0026158.1 mouse_genomes_project 2 182823371 182829936 - MGP_CASTEiJ_P0059605 Psma7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059606.1 MGP_CASTEiJ_G0026158.1 mouse_genomes_project 2 182823376 182824378 - Psma7 protein_coding retained_intron MGP_CASTEiJ_T0059607.1 MGP_CASTEiJ_G0026158.1 mouse_genomes_project 2 182823377 182829885 - Psma7 protein_coding retained_intron MGP_CASTEiJ_T0059608.1 MGP_CASTEiJ_G0026158.1 mouse_genomes_project 2 182823377 182829923 - MGP_CASTEiJ_P0059608 Psma7 protein_coding protein_coding MGP_CASTEiJ_T0059609.1 MGP_CASTEiJ_G0026158.1 mouse_genomes_project 2 182823813 182824482 - Psma7 protein_coding retained_intron MGP_CASTEiJ_T0059610.1 MGP_CASTEiJ_G0026158.1 mouse_genomes_project 2 182825162 182826303 - Psma7 protein_coding retained_intron MGP_CASTEiJ_T0059611.1 MGP_CASTEiJ_G0026158.1 mouse_genomes_project 2 182825544 182827627 - Psma7 protein_coding retained_intron MGP_CASTEiJ_T0059612.1 MGP_CASTEiJ_G0026158.1 mouse_genomes_project 2 182826777 182829875 - Psma7 protein_coding processed_transcript MGP_CASTEiJ_T0102257.1 MGP_CASTEiJ_G0038982.1 mouse_genomes_project 2 178824897 178887170 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0055834.1 MGP_CASTEiJ_G0025304.1 mouse_genomes_project 2 90818031 90830869 + MGP_CASTEiJ_P0055834 Olfr1261 protein_coding protein_coding MGP_CASTEiJ_T0055757.1 MGP_CASTEiJ_G0025246.1 mouse_genomes_project 2 89416431 89417595 + MGP_CASTEiJ_P0055757 Olfr1193 protein_coding protein_coding MGP_CASTEiJ_T0003839.1 MGP_CASTEiJ_G0003436.1 mouse_genomes_project 2 36619149 36623551 - Gm13584 antisense antisense MGP_CASTEiJ_T0056859.1 MGP_CASTEiJ_G0025537.1 mouse_genomes_project 2 121860557 121917583 + MGP_CASTEiJ_P0056859 Mapkbp1 protein_coding protein_coding MGP_CASTEiJ_T0056860.1 MGP_CASTEiJ_G0025537.1 mouse_genomes_project 2 121860910 121917577 + MGP_CASTEiJ_P0056860 Mapkbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056861.1 MGP_CASTEiJ_G0025537.1 mouse_genomes_project 2 121901865 121903279 + Mapkbp1 protein_coding retained_intron MGP_CASTEiJ_T0056862.1 MGP_CASTEiJ_G0025537.1 mouse_genomes_project 2 121903227 121905777 + Mapkbp1 protein_coding retained_intron MGP_CASTEiJ_T0056863.1 MGP_CASTEiJ_G0025537.1 mouse_genomes_project 2 121912250 121913224 + Mapkbp1 protein_coding retained_intron MGP_CASTEiJ_T0059680.1 MGP_CASTEiJ_G0026175.1 mouse_genomes_project 2 183477518 183523517 - MGP_CASTEiJ_P0059680 Dido1 protein_coding protein_coding MGP_CASTEiJ_T0059681.1 MGP_CASTEiJ_G0026175.1 mouse_genomes_project 2 183487825 183531763 - MGP_CASTEiJ_P0059681 Dido1 protein_coding protein_coding MGP_CASTEiJ_T0059682.1 MGP_CASTEiJ_G0026175.1 mouse_genomes_project 2 183487827 183497106 - MGP_CASTEiJ_P0059682 Dido1 protein_coding protein_coding MGP_CASTEiJ_T0059683.1 MGP_CASTEiJ_G0026175.1 mouse_genomes_project 2 183488751 183523517 - MGP_CASTEiJ_P0059683 Dido1 protein_coding protein_coding MGP_CASTEiJ_T0059684.1 MGP_CASTEiJ_G0026175.1 mouse_genomes_project 2 183502208 183531763 - MGP_CASTEiJ_P0059684 Dido1 protein_coding protein_coding MGP_CASTEiJ_T0059685.1 MGP_CASTEiJ_G0026175.1 mouse_genomes_project 2 183502223 183523517 - MGP_CASTEiJ_P0059685 Dido1 protein_coding protein_coding MGP_CASTEiJ_T0059686.1 MGP_CASTEiJ_G0026175.1 mouse_genomes_project 2 183506160 183523159 - Dido1 protein_coding processed_transcript MGP_CASTEiJ_T0013182.1 MGP_CASTEiJ_G0011345.1 mouse_genomes_project 2 72251379 72251721 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052516.1 MGP_CASTEiJ_G0024557.1 mouse_genomes_project 2 11495522 11549762 + MGP_CASTEiJ_P0052516 Tmem236 protein_coding protein_coding MGP_CASTEiJ_T0013258.1 MGP_CASTEiJ_G0011421.1 mouse_genomes_project 2 98147075 98148484 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006939.1 MGP_CASTEiJ_G0005710.1 mouse_genomes_project 2 2186800 2295629 - Gm26776 lincRNA lincRNA MGP_CASTEiJ_T0056525.1 MGP_CASTEiJ_G0025432.1 mouse_genomes_project 2 112100975 112413395 - MGP_CASTEiJ_P0056525 Ano3 protein_coding protein_coding MGP_CASTEiJ_T0056526.1 MGP_CASTEiJ_G0025432.1 mouse_genomes_project 2 112136545 112412844 - Ano3 protein_coding retained_intron MGP_CASTEiJ_T0056527.1 MGP_CASTEiJ_G0025432.1 mouse_genomes_project 2 112160089 112215242 - MGP_CASTEiJ_P0056527 Ano3 protein_coding protein_coding MGP_CASTEiJ_T0059602.1 MGP_CASTEiJ_G0026157.1 mouse_genomes_project 2 182808658 182822462 + MGP_CASTEiJ_P0059602 Lsm14b protein_coding protein_coding MGP_CASTEiJ_T0059603.1 MGP_CASTEiJ_G0026157.1 mouse_genomes_project 2 182808857 182822469 + MGP_CASTEiJ_P0059603 Lsm14b protein_coding protein_coding MGP_CASTEiJ_T0059604.1 MGP_CASTEiJ_G0026157.1 mouse_genomes_project 2 182811581 182820830 + Lsm14b protein_coding processed_transcript MGP_CASTEiJ_T0055858.1 MGP_CASTEiJ_G0025317.1 mouse_genomes_project 2 91574752 91616643 + MGP_CASTEiJ_P0055858 Fnbp4 protein_coding protein_coding MGP_CASTEiJ_T0055859.1 MGP_CASTEiJ_G0025317.1 mouse_genomes_project 2 91574986 91611766 + Fnbp4 protein_coding processed_transcript MGP_CASTEiJ_T0055860.1 MGP_CASTEiJ_G0025317.1 mouse_genomes_project 2 91583224 91592591 + Fnbp4 protein_coding processed_transcript MGP_CASTEiJ_T0055861.1 MGP_CASTEiJ_G0025317.1 mouse_genomes_project 2 91592740 91599033 + Fnbp4 protein_coding processed_transcript MGP_CASTEiJ_T0055862.1 MGP_CASTEiJ_G0025317.1 mouse_genomes_project 2 91593543 91603107 + Fnbp4 protein_coding processed_transcript MGP_CASTEiJ_T0055863.1 MGP_CASTEiJ_G0025317.1 mouse_genomes_project 2 91598720 91603328 + Fnbp4 protein_coding processed_transcript MGP_CASTEiJ_T0055864.1 MGP_CASTEiJ_G0025317.1 mouse_genomes_project 2 91603356 91611660 + Fnbp4 protein_coding processed_transcript MGP_CASTEiJ_T0055865.1 MGP_CASTEiJ_G0025317.1 mouse_genomes_project 2 91603913 91611749 + Fnbp4 protein_coding processed_transcript MGP_CASTEiJ_T0055866.1 MGP_CASTEiJ_G0025317.1 mouse_genomes_project 2 91610834 91611657 + Fnbp4 protein_coding processed_transcript MGP_CASTEiJ_T0054801.1 MGP_CASTEiJ_G0024958.1 mouse_genomes_project 2 59425341 59576871 - MGP_CASTEiJ_P0054801 Pla2r1 protein_coding protein_coding MGP_CASTEiJ_T0054802.1 MGP_CASTEiJ_G0024958.1 mouse_genomes_project 2 59427835 59433579 - Pla2r1 protein_coding processed_transcript MGP_CASTEiJ_T0054803.1 MGP_CASTEiJ_G0024958.1 mouse_genomes_project 2 59452211 59454773 - Pla2r1 protein_coding retained_intron MGP_CASTEiJ_T0054804.1 MGP_CASTEiJ_G0024958.1 mouse_genomes_project 2 59462470 59576871 - Pla2r1 protein_coding retained_intron MGP_CASTEiJ_T0054805.1 MGP_CASTEiJ_G0024958.1 mouse_genomes_project 2 59463331 59466605 - Pla2r1 protein_coding retained_intron MGP_CASTEiJ_T0054806.1 MGP_CASTEiJ_G0024958.1 mouse_genomes_project 2 59549679 59576871 - Pla2r1 protein_coding retained_intron MGP_CASTEiJ_T0007178.1 MGP_CASTEiJ_G0005900.1 mouse_genomes_project 2 158276776 158278075 - Gm14216 lincRNA lincRNA MGP_CASTEiJ_T0007179.1 MGP_CASTEiJ_G0005900.1 mouse_genomes_project 2 158276794 158293892 - Gm14216 lincRNA lincRNA MGP_CASTEiJ_T0010160.1 MGP_CASTEiJ_G0008348.1 mouse_genomes_project 2 107324390 107324515 + Gm22002 miRNA miRNA MGP_CASTEiJ_T0055707.1 MGP_CASTEiJ_G0025200.1 mouse_genomes_project 2 88090563 88091602 - MGP_CASTEiJ_P0055707 Olfr1128 protein_coding protein_coding MGP_CASTEiJ_T0098865.1 MGP_CASTEiJ_G0035790.1 mouse_genomes_project 2 4077414 4078653 - Gm10115 sense_intronic sense_intronic MGP_CASTEiJ_T0013235.1 MGP_CASTEiJ_G0011398.1 mouse_genomes_project 2 88092839 88093128 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058315.1 MGP_CASTEiJ_G0025869.1 mouse_genomes_project 2 156588738 156602416 - MGP_CASTEiJ_P0058315 Plagl2 protein_coding protein_coding MGP_CASTEiJ_T0058316.1 MGP_CASTEiJ_G0025869.1 mouse_genomes_project 2 156588751 156598903 - MGP_CASTEiJ_P0058316 Plagl2 protein_coding protein_coding MGP_CASTEiJ_T0007130.1 MGP_CASTEiJ_G0005860.1 mouse_genomes_project 2 122443463 122450056 + Gm26899 lincRNA lincRNA MGP_CASTEiJ_T0013044.1 MGP_CASTEiJ_G0011207.1 mouse_genomes_project 2 15784757 15785166 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058634.1 MGP_CASTEiJ_G0025936.1 mouse_genomes_project 2 159738743 159758701 - MGP_CASTEiJ_P0058634 Rbm12 protein_coding protein_coding MGP_CASTEiJ_T0058635.1 MGP_CASTEiJ_G0025936.1 mouse_genomes_project 2 159738743 159758701 - MGP_CASTEiJ_P0058635 Rbm12 protein_coding protein_coding MGP_CASTEiJ_T0058636.1 MGP_CASTEiJ_G0025936.1 mouse_genomes_project 2 159744304 159758661 - MGP_CASTEiJ_P0058636 Rbm12 protein_coding protein_coding MGP_CASTEiJ_T0058637.1 MGP_CASTEiJ_G0025936.1 mouse_genomes_project 2 159744740 159758723 - MGP_CASTEiJ_P0058637 Rbm12 protein_coding protein_coding MGP_CASTEiJ_T0058638.1 MGP_CASTEiJ_G0025936.1 mouse_genomes_project 2 159744769 159758706 - MGP_CASTEiJ_P0058638 Rbm12 protein_coding protein_coding MGP_CASTEiJ_T0058387.1 MGP_CASTEiJ_G0025890.1 mouse_genomes_project 2 157811970 157826889 - MGP_CASTEiJ_P0058387 protein_coding protein_coding MGP_CASTEiJ_T0003860.1 MGP_CASTEiJ_G0003451.1 mouse_genomes_project 2 64717820 64721156 + Gm13595 antisense antisense MGP_CASTEiJ_T0017164.1 MGP_CASTEiJ_G0014802.1 mouse_genomes_project 2 165493487 165493805 - Gm29229 processed_transcript processed_transcript MGP_CASTEiJ_T0052343.1 MGP_CASTEiJ_G0024533.1 mouse_genomes_project 2 7281968 7307369 - MGP_CASTEiJ_P0052343 Atp5c1 protein_coding protein_coding MGP_CASTEiJ_T0052344.1 MGP_CASTEiJ_G0024533.1 mouse_genomes_project 2 7281978 7307431 - MGP_CASTEiJ_P0052344 Atp5c1 protein_coding protein_coding MGP_CASTEiJ_T0052345.1 MGP_CASTEiJ_G0024533.1 mouse_genomes_project 2 7281982 7307386 - MGP_CASTEiJ_P0052345 Atp5c1 protein_coding protein_coding MGP_CASTEiJ_T0052346.1 MGP_CASTEiJ_G0024533.1 mouse_genomes_project 2 7290315 7306800 - MGP_CASTEiJ_P0052346 Atp5c1 protein_coding protein_coding MGP_CASTEiJ_T0052347.1 MGP_CASTEiJ_G0024533.1 mouse_genomes_project 2 7290459 7307118 - MGP_CASTEiJ_P0052347 Atp5c1 protein_coding protein_coding MGP_CASTEiJ_T0052348.1 MGP_CASTEiJ_G0024533.1 mouse_genomes_project 2 7291153 7306997 - MGP_CASTEiJ_P0052348 Atp5c1 protein_coding protein_coding MGP_CASTEiJ_T0017025.1 MGP_CASTEiJ_G0014731.1 mouse_genomes_project 2 49063295 49133807 + Gm13483 processed_transcript processed_transcript MGP_CASTEiJ_T0017026.1 MGP_CASTEiJ_G0014731.1 mouse_genomes_project 2 49063349 49200905 + Gm13483 processed_transcript processed_transcript MGP_CASTEiJ_T0017182.1 MGP_CASTEiJ_G0014813.1 mouse_genomes_project 2 183595772 183606789 - Gm14343 processed_transcript processed_transcript MGP_CASTEiJ_T0054353.1 MGP_CASTEiJ_G0024865.1 mouse_genomes_project 2 34781012 34781942 + MGP_CASTEiJ_P0054353 Olfr344 protein_coding protein_coding MGP_CASTEiJ_T0006954.1 MGP_CASTEiJ_G0005721.1 mouse_genomes_project 2 8583645 8587945 - Gm38171 lincRNA lincRNA MGP_CASTEiJ_T0059761.1 MGP_CASTEiJ_G0026190.1 mouse_genomes_project 2 184079621 184082453 + MGP_CASTEiJ_P0059761 BC051628 protein_coding protein_coding MGP_CASTEiJ_T0059762.1 MGP_CASTEiJ_G0026190.1 mouse_genomes_project 2 184079647 184082048 + MGP_CASTEiJ_P0059762 BC051628 protein_coding protein_coding MGP_CASTEiJ_T0059378.1 MGP_CASTEiJ_G0026096.1 mouse_genomes_project 2 172411816 172445910 - Fam65c protein_coding processed_transcript MGP_CASTEiJ_T0059379.1 MGP_CASTEiJ_G0026096.1 mouse_genomes_project 2 172411818 172445910 - MGP_CASTEiJ_P0059379 Fam65c protein_coding protein_coding MGP_CASTEiJ_T0059380.1 MGP_CASTEiJ_G0026096.1 mouse_genomes_project 2 172414026 172441963 - MGP_CASTEiJ_P0059380 Fam65c protein_coding unknown_likely_coding MGP_CASTEiJ_T0059381.1 MGP_CASTEiJ_G0026096.1 mouse_genomes_project 2 172418837 172420535 - Fam65c protein_coding retained_intron MGP_CASTEiJ_T0059382.1 MGP_CASTEiJ_G0026096.1 mouse_genomes_project 2 172422483 172424868 - Fam65c protein_coding retained_intron MGP_CASTEiJ_T0099679.1 MGP_CASTEiJ_G0036592.1 mouse_genomes_project 2 184557223 184557330 + Gm25879 snRNA snRNA MGP_CASTEiJ_T0052961.1 MGP_CASTEiJ_G0024637.1 mouse_genomes_project 2 22893336 22897391 - Dpp7 protein_coding processed_transcript MGP_CASTEiJ_T0052962.1 MGP_CASTEiJ_G0024637.1 mouse_genomes_project 2 22893347 22897377 - Dpp7 protein_coding processed_transcript MGP_CASTEiJ_T0052963.1 MGP_CASTEiJ_G0024637.1 mouse_genomes_project 2 22893350 22893935 - Dpp7 protein_coding processed_transcript MGP_CASTEiJ_T0052964.1 MGP_CASTEiJ_G0024637.1 mouse_genomes_project 2 22893350 22897405 - MGP_CASTEiJ_P0052964 Dpp7 protein_coding protein_coding MGP_CASTEiJ_T0052965.1 MGP_CASTEiJ_G0024637.1 mouse_genomes_project 2 22894214 22897104 - Dpp7 protein_coding processed_transcript MGP_CASTEiJ_T0052966.1 MGP_CASTEiJ_G0024637.1 mouse_genomes_project 2 22894420 22897343 - Dpp7 protein_coding processed_transcript MGP_CASTEiJ_T0052967.1 MGP_CASTEiJ_G0024637.1 mouse_genomes_project 2 22895527 22897343 - Dpp7 protein_coding processed_transcript MGP_CASTEiJ_T0052968.1 MGP_CASTEiJ_G0024637.1 mouse_genomes_project 2 22896056 22897399 - Dpp7 protein_coding processed_transcript MGP_CASTEiJ_T0052969.1 MGP_CASTEiJ_G0024637.1 mouse_genomes_project 2 22896487 22897392 - Dpp7 protein_coding processed_transcript MGP_CASTEiJ_T0052970.1 MGP_CASTEiJ_G0024637.1 mouse_genomes_project 2 22896748 22897378 - Dpp7 protein_coding processed_transcript MGP_CASTEiJ_T0013040.1 MGP_CASTEiJ_G0011203.1 mouse_genomes_project 2 15184401 15185532 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003779.1 MGP_CASTEiJ_G0003388.1 mouse_genomes_project 2 12099091 12127738 - Gm13269 antisense antisense MGP_CASTEiJ_T0003780.1 MGP_CASTEiJ_G0003388.1 mouse_genomes_project 2 12099091 12124043 - Gm13269 antisense antisense MGP_CASTEiJ_T0059587.1 MGP_CASTEiJ_G0026154.1 mouse_genomes_project 2 181160447 181212266 + MGP_CASTEiJ_P0059587 Cdh26 protein_coding protein_coding MGP_CASTEiJ_T0059588.1 MGP_CASTEiJ_G0026154.1 mouse_genomes_project 2 181160523 181212268 + MGP_CASTEiJ_P0059588 Cdh26 protein_coding protein_coding MGP_CASTEiJ_T0059589.1 MGP_CASTEiJ_G0026154.1 mouse_genomes_project 2 181160704 181212275 + MGP_CASTEiJ_P0059589 Cdh26 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059590.1 MGP_CASTEiJ_G0026154.1 mouse_genomes_project 2 181186100 181191721 + Cdh26 protein_coding retained_intron MGP_CASTEiJ_T0004013.1 MGP_CASTEiJ_G0003559.1 mouse_genomes_project 2 160029212 160030280 - Gm14170 antisense antisense MGP_CASTEiJ_T0058684.1 MGP_CASTEiJ_G0025942.1 mouse_genomes_project 2 159965336 160025146 + MGP_CASTEiJ_P0058684 Cnbd2 protein_coding protein_coding MGP_CASTEiJ_T0058685.1 MGP_CASTEiJ_G0025942.1 mouse_genomes_project 2 159965615 159993840 + Cnbd2 protein_coding processed_transcript MGP_CASTEiJ_T0058686.1 MGP_CASTEiJ_G0025942.1 mouse_genomes_project 2 159965654 159973864 + Cnbd2 protein_coding retained_intron MGP_CASTEiJ_T0058687.1 MGP_CASTEiJ_G0025942.1 mouse_genomes_project 2 159965670 160025149 + MGP_CASTEiJ_P0058687 Cnbd2 protein_coding protein_coding MGP_CASTEiJ_T0058688.1 MGP_CASTEiJ_G0025942.1 mouse_genomes_project 2 159987753 159994441 + Cnbd2 protein_coding processed_transcript MGP_CASTEiJ_T0053997.1 MGP_CASTEiJ_G0024804.1 mouse_genomes_project 2 30485502 30491999 + MGP_CASTEiJ_P0053997 Naif1 protein_coding protein_coding MGP_CASTEiJ_T0057508.1 MGP_CASTEiJ_G0025670.1 mouse_genomes_project 2 131986432 132006480 + Sirpa protein_coding processed_transcript MGP_CASTEiJ_T0057509.1 MGP_CASTEiJ_G0025670.1 mouse_genomes_project 2 131986436 132006483 + Sirpa protein_coding processed_transcript MGP_CASTEiJ_T0057510.1 MGP_CASTEiJ_G0025670.1 mouse_genomes_project 2 131986436 132027840 + MGP_CASTEiJ_P0057510 Sirpa protein_coding protein_coding MGP_CASTEiJ_T0057511.1 MGP_CASTEiJ_G0025670.1 mouse_genomes_project 2 131986436 132011883 + MGP_CASTEiJ_P0057511 Sirpa protein_coding protein_coding MGP_CASTEiJ_T0057512.1 MGP_CASTEiJ_G0025670.1 mouse_genomes_project 2 131986436 132027840 + MGP_CASTEiJ_P0057512 Sirpa protein_coding protein_coding MGP_CASTEiJ_T0057513.1 MGP_CASTEiJ_G0025670.1 mouse_genomes_project 2 131986462 132006672 + Sirpa protein_coding processed_transcript MGP_CASTEiJ_T0057514.1 MGP_CASTEiJ_G0025670.1 mouse_genomes_project 2 131986511 132027848 + MGP_CASTEiJ_P0057514 Sirpa protein_coding protein_coding MGP_CASTEiJ_T0057515.1 MGP_CASTEiJ_G0025670.1 mouse_genomes_project 2 131986792 132027840 + MGP_CASTEiJ_P0057515 Sirpa protein_coding protein_coding MGP_CASTEiJ_T0057516.1 MGP_CASTEiJ_G0025670.1 mouse_genomes_project 2 131986802 132027848 + MGP_CASTEiJ_P0057516 Sirpa protein_coding protein_coding MGP_CASTEiJ_T0057517.1 MGP_CASTEiJ_G0025670.1 mouse_genomes_project 2 131987152 132027848 + MGP_CASTEiJ_P0057517 Sirpa protein_coding protein_coding MGP_CASTEiJ_T0057518.1 MGP_CASTEiJ_G0025670.1 mouse_genomes_project 2 131987159 132026209 + Sirpa protein_coding processed_transcript MGP_CASTEiJ_T0057519.1 MGP_CASTEiJ_G0025670.1 mouse_genomes_project 2 131987165 132025917 + MGP_CASTEiJ_P0057519 Sirpa protein_coding protein_coding MGP_CASTEiJ_T0057520.1 MGP_CASTEiJ_G0025670.1 mouse_genomes_project 2 131987210 132025804 + MGP_CASTEiJ_P0057520 Sirpa protein_coding protein_coding MGP_CASTEiJ_T0057521.1 MGP_CASTEiJ_G0025670.1 mouse_genomes_project 2 132016304 132023664 + Sirpa protein_coding retained_intron MGP_CASTEiJ_T0013092.1 MGP_CASTEiJ_G0011255.1 mouse_genomes_project 2 35372284 35373714 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059127.1 MGP_CASTEiJ_G0026053.1 mouse_genomes_project 2 169001266 169003406 - Spata25 protein_coding processed_transcript MGP_CASTEiJ_T0059128.1 MGP_CASTEiJ_G0026053.1 mouse_genomes_project 2 169002259 169003415 - MGP_CASTEiJ_P0059128 Spata25 protein_coding protein_coding MGP_CASTEiJ_T0099655.1 MGP_CASTEiJ_G0036568.1 mouse_genomes_project 2 124453893 124454045 - Gm24409 snRNA snRNA MGP_CASTEiJ_T0003883.1 MGP_CASTEiJ_G0003467.1 mouse_genomes_project 2 73133987 73140664 + Gm13703 antisense antisense MGP_CASTEiJ_T0013452.1 MGP_CASTEiJ_G0011615.1 mouse_genomes_project 2 179673945 179674518 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052638.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 17414110 18259408 + MGP_CASTEiJ_P0052638 Etl4 protein_coding protein_coding MGP_CASTEiJ_T0052639.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 17795285 18173386 + MGP_CASTEiJ_P0052639 Etl4 protein_coding protein_coding MGP_CASTEiJ_T0052640.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 17795285 18327209 + MGP_CASTEiJ_P0052640 Etl4 protein_coding protein_coding MGP_CASTEiJ_T0052641.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 17845629 18173252 + MGP_CASTEiJ_P0052641 Etl4 protein_coding protein_coding MGP_CASTEiJ_T0052642.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 18016178 18327198 + MGP_CASTEiJ_P0052642 Etl4 protein_coding protein_coding MGP_CASTEiJ_T0052643.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 18016178 18327198 + MGP_CASTEiJ_P0052643 Etl4 protein_coding protein_coding MGP_CASTEiJ_T0052644.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 18022840 18326561 + MGP_CASTEiJ_P0052644 Etl4 protein_coding protein_coding MGP_CASTEiJ_T0052645.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 18022860 18224781 + Etl4 protein_coding retained_intron MGP_CASTEiJ_T0052646.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 18022877 18327210 + MGP_CASTEiJ_P0052646 Etl4 protein_coding protein_coding MGP_CASTEiJ_T0052647.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 18050709 18222478 + Etl4 protein_coding processed_transcript MGP_CASTEiJ_T0052648.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 18050751 18173650 + Etl4 protein_coding processed_transcript MGP_CASTEiJ_T0052649.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 18063989 18222568 + Etl4 protein_coding processed_transcript MGP_CASTEiJ_T0052650.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 18226339 18258578 + Etl4 protein_coding processed_transcript MGP_CASTEiJ_T0052651.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 18236724 18320081 + Etl4 protein_coding retained_intron MGP_CASTEiJ_T0052652.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 18236724 18302414 + Etl4 protein_coding retained_intron MGP_CASTEiJ_T0052653.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 18236971 18324875 + MGP_CASTEiJ_P0052653 Etl4 protein_coding protein_coding MGP_CASTEiJ_T0052654.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 18251318 18327030 + MGP_CASTEiJ_P0052654 Etl4 protein_coding protein_coding MGP_CASTEiJ_T0052655.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 18251318 18327394 + MGP_CASTEiJ_P0052655 Etl4 protein_coding protein_coding MGP_CASTEiJ_T0052656.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 18315495 18325557 + Etl4 protein_coding processed_transcript MGP_CASTEiJ_T0052657.1 MGP_CASTEiJ_G0024582.1 mouse_genomes_project 2 18324122 18327198 + Etl4 protein_coding retained_intron MGP_CASTEiJ_T0010094.1 MGP_CASTEiJ_G0008282.1 mouse_genomes_project 2 15475218 15475276 + Mir7655 miRNA miRNA MGP_CASTEiJ_T0054461.1 MGP_CASTEiJ_G0024904.1 mouse_genomes_project 2 37312656 37316693 - MGP_CASTEiJ_P0054461 Rpl35 protein_coding protein_coding MGP_CASTEiJ_T0054462.1 MGP_CASTEiJ_G0024904.1 mouse_genomes_project 2 37312695 37316109 - Rpl35 protein_coding processed_transcript MGP_CASTEiJ_T0054463.1 MGP_CASTEiJ_G0024904.1 mouse_genomes_project 2 37315677 37316188 - Rpl35 protein_coding processed_transcript MGP_CASTEiJ_T0054069.1 MGP_CASTEiJ_G0024817.1 mouse_genomes_project 2 30820529 30841292 - MGP_CASTEiJ_P0054069 Ttc16 protein_coding protein_coding MGP_CASTEiJ_T0054078.1 MGP_CASTEiJ_G0024817.1 mouse_genomes_project 2 30826745 30841493 - MGP_CASTEiJ_P0054078 Ttc16 protein_coding protein_coding MGP_CASTEiJ_T0054079.1 MGP_CASTEiJ_G0024817.1 mouse_genomes_project 2 30826908 30841257 - MGP_CASTEiJ_P0054079 Ttc16 protein_coding protein_coding MGP_CASTEiJ_T0054080.1 MGP_CASTEiJ_G0024817.1 mouse_genomes_project 2 30828698 30841542 - MGP_CASTEiJ_P0054080 Ttc16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054081.1 MGP_CASTEiJ_G0024817.1 mouse_genomes_project 2 30838661 30841496 - Ttc16 protein_coding retained_intron MGP_CASTEiJ_T0054082.1 MGP_CASTEiJ_G0024817.1 mouse_genomes_project 2 30840418 30841540 - MGP_CASTEiJ_P0054082 Ttc16 protein_coding protein_coding MGP_CASTEiJ_T0100891.1 MGP_CASTEiJ_G0037804.1 mouse_genomes_project 2 98232210 98232333 + Gm22957 snoRNA snoRNA MGP_CASTEiJ_T0003850.1 MGP_CASTEiJ_G0003444.1 mouse_genomes_project 2 57222661 57232675 + Gm13544 antisense antisense MGP_CASTEiJ_T0055375.1 MGP_CASTEiJ_G0025066.1 mouse_genomes_project 2 77139958 77244863 - MGP_CASTEiJ_P0055375 Sestd1 protein_coding protein_coding MGP_CASTEiJ_T0055376.1 MGP_CASTEiJ_G0025066.1 mouse_genomes_project 2 77149337 77259728 - MGP_CASTEiJ_P0055376 Sestd1 protein_coding protein_coding MGP_CASTEiJ_T0055377.1 MGP_CASTEiJ_G0025066.1 mouse_genomes_project 2 77149913 77213718 - MGP_CASTEiJ_P0055377 Sestd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055378.1 MGP_CASTEiJ_G0025066.1 mouse_genomes_project 2 77161795 77164333 - Sestd1 protein_coding processed_transcript MGP_CASTEiJ_T0055379.1 MGP_CASTEiJ_G0025066.1 mouse_genomes_project 2 77161797 77259725 - Sestd1 protein_coding processed_transcript MGP_CASTEiJ_T0059238.1 MGP_CASTEiJ_G0026073.1 mouse_genomes_project 2 169733422 169751293 + MGP_CASTEiJ_P0059238 Slc2a10 protein_coding protein_coding MGP_CASTEiJ_T0059239.1 MGP_CASTEiJ_G0026073.1 mouse_genomes_project 2 169738150 169746148 + Slc2a10 protein_coding processed_transcript MGP_CASTEiJ_T0057172.1 MGP_CASTEiJ_G0025587.1 mouse_genomes_project 2 124199554 124205024 + MGP_CASTEiJ_P0057172 B2m protein_coding protein_coding MGP_CASTEiJ_T0057243.1 MGP_CASTEiJ_G0025603.1 mouse_genomes_project 2 127262357 127282857 + MGP_CASTEiJ_P0057243 Slc24a5 protein_coding protein_coding MGP_CASTEiJ_T0057244.1 MGP_CASTEiJ_G0025603.1 mouse_genomes_project 2 127263475 127277504 + Slc24a5 protein_coding processed_transcript MGP_CASTEiJ_T0057245.1 MGP_CASTEiJ_G0025603.1 mouse_genomes_project 2 127274626 127277357 + Slc24a5 protein_coding retained_intron MGP_CASTEiJ_T0013008.1 MGP_CASTEiJ_G0011171.1 mouse_genomes_project 2 1984098 1984393 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054369.1 MGP_CASTEiJ_G0024880.1 mouse_genomes_project 2 35184354 35185347 - MGP_CASTEiJ_P0054369 Olfr358 protein_coding protein_coding MGP_CASTEiJ_T0058542.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159475108 159562637 - Uqcc1 protein_coding processed_transcript MGP_CASTEiJ_T0058543.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159475108 159562637 - MGP_CASTEiJ_P0058543 Uqcc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058544.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159475110 159562620 - MGP_CASTEiJ_P0058544 Uqcc1 protein_coding protein_coding MGP_CASTEiJ_T0058545.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159475110 159562613 - MGP_CASTEiJ_P0058545 Uqcc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058546.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159475135 159562887 - MGP_CASTEiJ_P0058546 Uqcc1 protein_coding protein_coding MGP_CASTEiJ_T0058547.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159476161 159562595 - MGP_CASTEiJ_P0058547 Uqcc1 protein_coding protein_coding MGP_CASTEiJ_T0058548.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159476398 159479924 - Uqcc1 protein_coding processed_transcript MGP_CASTEiJ_T0058549.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159476455 159562621 - MGP_CASTEiJ_P0058549 Uqcc1 protein_coding protein_coding MGP_CASTEiJ_T0058550.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159476474 159562887 - MGP_CASTEiJ_P0058550 Uqcc1 protein_coding protein_coding MGP_CASTEiJ_T0058551.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159476665 159562609 - MGP_CASTEiJ_P0058551 Uqcc1 protein_coding protein_coding MGP_CASTEiJ_T0058552.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159479134 159562840 - Uqcc1 protein_coding retained_intron MGP_CASTEiJ_T0058553.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159479598 159562620 - MGP_CASTEiJ_P0058553 Uqcc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058554.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159486077 159562627 - Uqcc1 protein_coding retained_intron MGP_CASTEiJ_T0058555.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159500785 159562633 - Uqcc1 protein_coding processed_transcript MGP_CASTEiJ_T0058556.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159518103 159562637 - MGP_CASTEiJ_P0058556 Uqcc1 protein_coding protein_coding MGP_CASTEiJ_T0058557.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159518115 159543687 - Uqcc1 protein_coding retained_intron MGP_CASTEiJ_T0058558.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159518122 159562853 - Uqcc1 protein_coding processed_transcript MGP_CASTEiJ_T0058559.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159541054 159562623 - Uqcc1 protein_coding retained_intron MGP_CASTEiJ_T0058560.1 MGP_CASTEiJ_G0025926.1 mouse_genomes_project 2 159542443 159562627 - MGP_CASTEiJ_P0058560 Uqcc1 protein_coding protein_coding MGP_CASTEiJ_T0007207.1 MGP_CASTEiJ_G0005926.1 mouse_genomes_project 2 170678419 170695548 - Gm14268 lincRNA lincRNA MGP_CASTEiJ_T0007208.1 MGP_CASTEiJ_G0005926.1 mouse_genomes_project 2 170678705 170695578 - Gm14268 lincRNA lincRNA MGP_CASTEiJ_T0056631.1 MGP_CASTEiJ_G0025487.1 mouse_genomes_project 2 117228234 117437922 + MGP_CASTEiJ_P0056631 BC052040 protein_coding protein_coding MGP_CASTEiJ_T0056632.1 MGP_CASTEiJ_G0025487.1 mouse_genomes_project 2 117228251 117437922 + MGP_CASTEiJ_P0056632 BC052040 protein_coding protein_coding MGP_CASTEiJ_T0056633.1 MGP_CASTEiJ_G0025487.1 mouse_genomes_project 2 117228319 117287705 + BC052040 protein_coding processed_transcript MGP_CASTEiJ_T0013059.1 MGP_CASTEiJ_G0011222.1 mouse_genomes_project 2 20957637 20959321 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057503.1 MGP_CASTEiJ_G0025667.1 mouse_genomes_project 2 131689446 131701075 - MGP_CASTEiJ_P0057503 Il1a protein_coding protein_coding MGP_CASTEiJ_T0010074.1 MGP_CASTEiJ_G0008262.1 mouse_genomes_project 2 7746405 7746505 + Gm22925 miRNA miRNA MGP_CASTEiJ_T0058296.1 MGP_CASTEiJ_G0025864.1 mouse_genomes_project 2 156388154 156412824 + MGP_CASTEiJ_P0058296 Xkr7 protein_coding protein_coding MGP_CASTEiJ_T0003824.1 MGP_CASTEiJ_G0003424.1 mouse_genomes_project 2 30246285 30249681 - Gm13610 antisense antisense MGP_CASTEiJ_T0054008.1 MGP_CASTEiJ_G0024808.1 mouse_genomes_project 2 30616034 30617045 + Pip5kl1 protein_coding processed_transcript MGP_CASTEiJ_T0054009.1 MGP_CASTEiJ_G0024808.1 mouse_genomes_project 2 30616955 30626541 + MGP_CASTEiJ_P0054009 Pip5kl1 protein_coding protein_coding MGP_CASTEiJ_T0054010.1 MGP_CASTEiJ_G0024808.1 mouse_genomes_project 2 30617080 30626530 + MGP_CASTEiJ_P0054010 Pip5kl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054011.1 MGP_CASTEiJ_G0024808.1 mouse_genomes_project 2 30622717 30626531 + Pip5kl1 protein_coding retained_intron MGP_CASTEiJ_T0058973.1 MGP_CASTEiJ_G0025998.1 mouse_genomes_project 2 167394629 167459232 - MGP_CASTEiJ_P0058973 Jph2 protein_coding protein_coding MGP_CASTEiJ_T0058974.1 MGP_CASTEiJ_G0025998.1 mouse_genomes_project 2 167394629 167459188 - MGP_CASTEiJ_P0058974 Jph2 protein_coding protein_coding MGP_CASTEiJ_T0058338.1 MGP_CASTEiJ_G0025875.1 mouse_genomes_project 2 157066687 157112143 + MGP_CASTEiJ_P0058338 Dnmt3b protein_coding protein_coding MGP_CASTEiJ_T0058339.1 MGP_CASTEiJ_G0025875.1 mouse_genomes_project 2 157066687 157112143 + MGP_CASTEiJ_P0058339 Dnmt3b protein_coding protein_coding MGP_CASTEiJ_T0058340.1 MGP_CASTEiJ_G0025875.1 mouse_genomes_project 2 157066690 157112143 + MGP_CASTEiJ_P0058340 Dnmt3b protein_coding protein_coding MGP_CASTEiJ_T0058341.1 MGP_CASTEiJ_G0025875.1 mouse_genomes_project 2 157066690 157112143 + MGP_CASTEiJ_P0058341 Dnmt3b protein_coding protein_coding MGP_CASTEiJ_T0058342.1 MGP_CASTEiJ_G0025875.1 mouse_genomes_project 2 157066690 157112143 + MGP_CASTEiJ_P0058342 Dnmt3b protein_coding protein_coding MGP_CASTEiJ_T0058343.1 MGP_CASTEiJ_G0025875.1 mouse_genomes_project 2 157066691 157112143 + MGP_CASTEiJ_P0058343 Dnmt3b protein_coding protein_coding MGP_CASTEiJ_T0058344.1 MGP_CASTEiJ_G0025875.1 mouse_genomes_project 2 157066691 157112139 + MGP_CASTEiJ_P0058344 Dnmt3b protein_coding protein_coding MGP_CASTEiJ_T0058345.1 MGP_CASTEiJ_G0025875.1 mouse_genomes_project 2 157066691 157112143 + MGP_CASTEiJ_P0058345 Dnmt3b protein_coding protein_coding MGP_CASTEiJ_T0058346.1 MGP_CASTEiJ_G0025875.1 mouse_genomes_project 2 157066691 157112143 + MGP_CASTEiJ_P0058346 Dnmt3b protein_coding protein_coding MGP_CASTEiJ_T0058347.1 MGP_CASTEiJ_G0025875.1 mouse_genomes_project 2 157066854 157111729 + MGP_CASTEiJ_P0058347 Dnmt3b protein_coding protein_coding MGP_CASTEiJ_T0058348.1 MGP_CASTEiJ_G0025875.1 mouse_genomes_project 2 157066940 157112148 + MGP_CASTEiJ_P0058348 Dnmt3b protein_coding unknown_likely_coding MGP_CASTEiJ_T0058349.1 MGP_CASTEiJ_G0025875.1 mouse_genomes_project 2 157087550 157089717 + Dnmt3b protein_coding retained_intron MGP_CASTEiJ_T0058350.1 MGP_CASTEiJ_G0025875.1 mouse_genomes_project 2 157091171 157092206 + Dnmt3b protein_coding retained_intron MGP_CASTEiJ_T0052626.1 MGP_CASTEiJ_G0024576.1 mouse_genomes_project 2 16471774 16473230 + MGP_CASTEiJ_P0052626 4930426L09Rik protein_coding protein_coding MGP_CASTEiJ_T0059000.1 MGP_CASTEiJ_G0026005.1 mouse_genomes_project 2 167706339 167735447 - MGP_CASTEiJ_P0059000 Serinc3 protein_coding protein_coding MGP_CASTEiJ_T0059001.1 MGP_CASTEiJ_G0026005.1 mouse_genomes_project 2 167724198 167735441 - Serinc3 protein_coding processed_transcript MGP_CASTEiJ_T0054615.1 MGP_CASTEiJ_G0024926.1 mouse_genomes_project 2 50769039 50781233 - MGP_CASTEiJ_P0054615 Rbm43 protein_coding protein_coding MGP_CASTEiJ_T0054616.1 MGP_CASTEiJ_G0024926.1 mouse_genomes_project 2 50769039 50781389 - MGP_CASTEiJ_P0054616 Rbm43 protein_coding protein_coding MGP_CASTEiJ_T0054617.1 MGP_CASTEiJ_G0024926.1 mouse_genomes_project 2 50769042 50780869 - MGP_CASTEiJ_P0054617 Rbm43 protein_coding protein_coding MGP_CASTEiJ_T0054618.1 MGP_CASTEiJ_G0024926.1 mouse_genomes_project 2 50769973 50771607 - Rbm43 protein_coding processed_transcript MGP_CASTEiJ_T0054619.1 MGP_CASTEiJ_G0024926.1 mouse_genomes_project 2 50770238 50777887 - Rbm43 protein_coding processed_transcript MGP_CASTEiJ_T0054620.1 MGP_CASTEiJ_G0024926.1 mouse_genomes_project 2 50770457 50780899 - Rbm43 protein_coding processed_transcript MGP_CASTEiJ_T0058078.1 MGP_CASTEiJ_G0025796.1 mouse_genomes_project 2 152052794 152059622 + MGP_CASTEiJ_P0058078 Cst8 protein_coding protein_coding MGP_CASTEiJ_T0058079.1 MGP_CASTEiJ_G0025796.1 mouse_genomes_project 2 152052843 152059622 + MGP_CASTEiJ_P0058079 Cst8 protein_coding protein_coding MGP_CASTEiJ_T0058080.1 MGP_CASTEiJ_G0025796.1 mouse_genomes_project 2 152052912 152059622 + Cst8 protein_coding processed_transcript MGP_CASTEiJ_T0007023.1 MGP_CASTEiJ_G0005774.1 mouse_genomes_project 2 59021620 59023321 + Gm13572 lincRNA lincRNA MGP_CASTEiJ_T0055612.1 MGP_CASTEiJ_G0025116.1 mouse_genomes_project 2 85751534 85752479 - MGP_CASTEiJ_P0055612 Olfr993 protein_coding protein_coding MGP_CASTEiJ_T0010090.1 MGP_CASTEiJ_G0008278.1 mouse_genomes_project 2 7756125 7756282 + Mir669h miRNA miRNA MGP_CASTEiJ_T0001030.1 MGP_CASTEiJ_G0000966.1 mouse_genomes_project 2 37038915 37039685 - TEC TEC MGP_CASTEiJ_T0057727.1 MGP_CASTEiJ_G0025715.1 mouse_genomes_project 2 134476021 134512182 + MGP_CASTEiJ_P0057727 protein_coding protein_coding MGP_CASTEiJ_T0057728.1 MGP_CASTEiJ_G0025715.1 mouse_genomes_project 2 134476021 134512182 + MGP_CASTEiJ_P0057728 protein_coding protein_coding MGP_CASTEiJ_T0055807.1 MGP_CASTEiJ_G0025287.1 mouse_genomes_project 2 90387159 90388083 - MGP_CASTEiJ_P0055807 Olfr1245 protein_coding protein_coding MGP_CASTEiJ_T0059333.1 MGP_CASTEiJ_G0026085.1 mouse_genomes_project 2 171474043 171562912 - MGP_CASTEiJ_P0059333 Kcnb1 protein_coding protein_coding MGP_CASTEiJ_T0054164.1 MGP_CASTEiJ_G0024833.1 mouse_genomes_project 2 32326782 32541668 - MGP_CASTEiJ_P0054164 Pbx3 protein_coding protein_coding MGP_CASTEiJ_T0054165.1 MGP_CASTEiJ_G0024833.1 mouse_genomes_project 2 32328207 32452281 - Pbx3 protein_coding processed_transcript MGP_CASTEiJ_T0054166.1 MGP_CASTEiJ_G0024833.1 mouse_genomes_project 2 32328215 32541668 - MGP_CASTEiJ_P0054166 Pbx3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054167.1 MGP_CASTEiJ_G0024833.1 mouse_genomes_project 2 32328215 32541668 - MGP_CASTEiJ_P0054167 Pbx3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054168.1 MGP_CASTEiJ_G0024833.1 mouse_genomes_project 2 32332191 32540594 - MGP_CASTEiJ_P0054168 Pbx3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054169.1 MGP_CASTEiJ_G0024833.1 mouse_genomes_project 2 32370255 32543446 - MGP_CASTEiJ_P0054169 Pbx3 protein_coding protein_coding MGP_CASTEiJ_T0054170.1 MGP_CASTEiJ_G0024833.1 mouse_genomes_project 2 32381269 32541001 - MGP_CASTEiJ_P0054170 Pbx3 protein_coding protein_coding MGP_CASTEiJ_T0054171.1 MGP_CASTEiJ_G0024833.1 mouse_genomes_project 2 32381396 32540898 - MGP_CASTEiJ_P0054171 Pbx3 protein_coding protein_coding MGP_CASTEiJ_T0054172.1 MGP_CASTEiJ_G0024833.1 mouse_genomes_project 2 32537853 32541540 - Pbx3 protein_coding retained_intron MGP_CASTEiJ_T0102233.1 MGP_CASTEiJ_G0038958.1 mouse_genomes_project 2 87813359 87814280 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013080.1 MGP_CASTEiJ_G0011243.1 mouse_genomes_project 2 30437760 30438362 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058421.1 MGP_CASTEiJ_G0025898.1 mouse_genomes_project 2 158085416 158093513 - MGP_CASTEiJ_P0058421 protein_coding protein_coding MGP_CASTEiJ_T0007110.1 MGP_CASTEiJ_G0005847.1 mouse_genomes_project 2 116969510 116972094 + Gm13976 lincRNA lincRNA MGP_CASTEiJ_T0013119.1 MGP_CASTEiJ_G0011282.1 mouse_genomes_project 2 47057912 47058226 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007153.1 MGP_CASTEiJ_G0005880.1 mouse_genomes_project 2 140083324 140130211 + Gm14055 lincRNA lincRNA MGP_CASTEiJ_T0013075.1 MGP_CASTEiJ_G0011238.1 mouse_genomes_project 2 27276203 27276494 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000990.1 MGP_CASTEiJ_G0000926.1 mouse_genomes_project 2 8978425 8978845 + TEC TEC MGP_CASTEiJ_T0100890.1 MGP_CASTEiJ_G0037803.1 mouse_genomes_project 2 95909555 95909687 - Gm26396 snoRNA snoRNA MGP_CASTEiJ_T0055907.1 MGP_CASTEiJ_G0025324.1 mouse_genomes_project 2 91893675 91905234 + MGP_CASTEiJ_P0055907 Rapsn protein_coding protein_coding MGP_CASTEiJ_T0055908.1 MGP_CASTEiJ_G0025324.1 mouse_genomes_project 2 91893682 91905231 + MGP_CASTEiJ_P0055908 Rapsn protein_coding protein_coding MGP_CASTEiJ_T0055909.1 MGP_CASTEiJ_G0025324.1 mouse_genomes_project 2 91893696 91905234 + MGP_CASTEiJ_P0055909 Rapsn protein_coding protein_coding MGP_CASTEiJ_T0055910.1 MGP_CASTEiJ_G0025324.1 mouse_genomes_project 2 91902255 91904985 + Rapsn protein_coding retained_intron MGP_CASTEiJ_T0013127.1 MGP_CASTEiJ_G0011290.1 mouse_genomes_project 2 49694168 49696018 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013037.1 MGP_CASTEiJ_G0011200.1 mouse_genomes_project 2 13344267 13344879 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055675.1 MGP_CASTEiJ_G0025176.1 mouse_genomes_project 2 87471848 87472814 - MGP_CASTEiJ_P0055675 Olfr1100 protein_coding protein_coding MGP_CASTEiJ_T0059047.1 MGP_CASTEiJ_G0026024.1 mouse_genomes_project 2 168469001 168470632 + MGP_CASTEiJ_P0059047 Svs5 protein_coding protein_coding MGP_CASTEiJ_T0059048.1 MGP_CASTEiJ_G0026024.1 mouse_genomes_project 2 168469685 168470632 + MGP_CASTEiJ_P0059048 Svs5 protein_coding protein_coding MGP_CASTEiJ_T0010064.1 MGP_CASTEiJ_G0008252.1 mouse_genomes_project 2 7738676 7738760 + Mir466o miRNA miRNA MGP_CASTEiJ_T0052289.1 MGP_CASTEiJ_G0024525.1 mouse_genomes_project 2 3189290 3223989 - MGP_CASTEiJ_P0052289 Proser2 protein_coding protein_coding MGP_CASTEiJ_T0052290.1 MGP_CASTEiJ_G0024525.1 mouse_genomes_project 2 3191691 3223885 - MGP_CASTEiJ_P0052290 Proser2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052291.1 MGP_CASTEiJ_G0024525.1 mouse_genomes_project 2 3191700 3223924 - MGP_CASTEiJ_P0052291 Proser2 protein_coding protein_coding MGP_CASTEiJ_T0052292.1 MGP_CASTEiJ_G0024525.1 mouse_genomes_project 2 3192863 3223917 - MGP_CASTEiJ_P0052292 Proser2 protein_coding protein_coding MGP_CASTEiJ_T0052293.1 MGP_CASTEiJ_G0024525.1 mouse_genomes_project 2 3218574 3223959 - Proser2 protein_coding processed_transcript MGP_CASTEiJ_T0056175.1 MGP_CASTEiJ_G0025363.1 mouse_genomes_project 2 94716592 94757037 + MGP_CASTEiJ_P0056175 Alx4 protein_coding protein_coding MGP_CASTEiJ_T0056176.1 MGP_CASTEiJ_G0025363.1 mouse_genomes_project 2 94716806 94756673 + MGP_CASTEiJ_P0056176 Alx4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056177.1 MGP_CASTEiJ_G0025363.1 mouse_genomes_project 2 94716863 94757044 + MGP_CASTEiJ_P0056177 Alx4 protein_coding protein_coding MGP_CASTEiJ_T0013239.1 MGP_CASTEiJ_G0011402.1 mouse_genomes_project 2 88404756 88404979 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056371.1 MGP_CASTEiJ_G0025396.1 mouse_genomes_project 2 105227831 105266264 + MGP_CASTEiJ_P0056371 Fbxo3 protein_coding protein_coding MGP_CASTEiJ_T0056372.1 MGP_CASTEiJ_G0025396.1 mouse_genomes_project 2 105227929 105259022 + MGP_CASTEiJ_P0056372 Fbxo3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056373.1 MGP_CASTEiJ_G0025396.1 mouse_genomes_project 2 105227948 105260531 + MGP_CASTEiJ_P0056373 Fbxo3 protein_coding protein_coding MGP_CASTEiJ_T0056374.1 MGP_CASTEiJ_G0025396.1 mouse_genomes_project 2 105227950 105266027 + MGP_CASTEiJ_P0056374 Fbxo3 protein_coding protein_coding MGP_CASTEiJ_T0056375.1 MGP_CASTEiJ_G0025396.1 mouse_genomes_project 2 105227952 105260494 + Fbxo3 protein_coding processed_transcript MGP_CASTEiJ_T0056376.1 MGP_CASTEiJ_G0025396.1 mouse_genomes_project 2 105227964 105260508 + MGP_CASTEiJ_P0056376 Fbxo3 protein_coding protein_coding MGP_CASTEiJ_T0058366.1 MGP_CASTEiJ_G0025882.1 mouse_genomes_project 2 157382963 157387596 + Bpifb4 protein_coding retained_intron MGP_CASTEiJ_T0058367.1 MGP_CASTEiJ_G0025882.1 mouse_genomes_project 2 157382972 157409222 + MGP_CASTEiJ_P0058367 Bpifb4 protein_coding protein_coding MGP_CASTEiJ_T0058368.1 MGP_CASTEiJ_G0025882.1 mouse_genomes_project 2 157385856 157409022 + MGP_CASTEiJ_P0058368 Bpifb4 protein_coding protein_coding MGP_CASTEiJ_T0058369.1 MGP_CASTEiJ_G0025882.1 mouse_genomes_project 2 157387262 157389832 + Bpifb4 protein_coding retained_intron MGP_CASTEiJ_T0058370.1 MGP_CASTEiJ_G0025882.1 mouse_genomes_project 2 157388917 157409022 + MGP_CASTEiJ_P0058370 Bpifb4 protein_coding protein_coding MGP_CASTEiJ_T0054362.1 MGP_CASTEiJ_G0024873.1 mouse_genomes_project 2 35053877 35054810 - MGP_CASTEiJ_P0054362 Olfr351 protein_coding protein_coding MGP_CASTEiJ_T0059017.1 MGP_CASTEiJ_G0026010.1 mouse_genomes_project 2 167948980 168010107 - MGP_CASTEiJ_P0059017 Rims4 protein_coding protein_coding MGP_CASTEiJ_T0057485.1 MGP_CASTEiJ_G0025663.1 mouse_genomes_project 2 131484571 131512158 + MGP_CASTEiJ_P0057485 Polr1b protein_coding protein_coding MGP_CASTEiJ_T0057486.1 MGP_CASTEiJ_G0025663.1 mouse_genomes_project 2 131484603 131506734 + MGP_CASTEiJ_P0057486 Polr1b protein_coding protein_coding MGP_CASTEiJ_T0057487.1 MGP_CASTEiJ_G0025663.1 mouse_genomes_project 2 131501617 131504437 + Polr1b protein_coding processed_transcript MGP_CASTEiJ_T0057488.1 MGP_CASTEiJ_G0025663.1 mouse_genomes_project 2 131504601 131508702 + Polr1b protein_coding processed_transcript MGP_CASTEiJ_T0057489.1 MGP_CASTEiJ_G0025663.1 mouse_genomes_project 2 131507626 131509402 + Polr1b protein_coding processed_transcript MGP_CASTEiJ_T0000986.1 MGP_CASTEiJ_G0000922.1 mouse_genomes_project 2 8447984 8450673 - TEC TEC MGP_CASTEiJ_T0098581.1 MGP_CASTEiJ_G0035512.1 mouse_genomes_project 2 148424921 148425015 + Gm22731 rRNA rRNA MGP_CASTEiJ_T0054419.1 MGP_CASTEiJ_G0024896.1 mouse_genomes_project 2 36025124 36539190 - MGP_CASTEiJ_P0054419 Dennd1a protein_coding protein_coding MGP_CASTEiJ_T0054420.1 MGP_CASTEiJ_G0024896.1 mouse_genomes_project 2 36027188 36080717 - MGP_CASTEiJ_P0054420 Dennd1a protein_coding protein_coding MGP_CASTEiJ_T0054421.1 MGP_CASTEiJ_G0024896.1 mouse_genomes_project 2 36044465 36539205 - MGP_CASTEiJ_P0054421 Dennd1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054422.1 MGP_CASTEiJ_G0024896.1 mouse_genomes_project 2 36172067 36539192 - MGP_CASTEiJ_P0054422 Dennd1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054423.1 MGP_CASTEiJ_G0024896.1 mouse_genomes_project 2 36172112 36539003 - MGP_CASTEiJ_P0054423 Dennd1a protein_coding protein_coding MGP_CASTEiJ_T0054424.1 MGP_CASTEiJ_G0024896.1 mouse_genomes_project 2 36262542 36406612 - Dennd1a protein_coding retained_intron MGP_CASTEiJ_T0054425.1 MGP_CASTEiJ_G0024896.1 mouse_genomes_project 2 36278450 36539173 - MGP_CASTEiJ_P0054425 Dennd1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054426.1 MGP_CASTEiJ_G0024896.1 mouse_genomes_project 2 36365850 36539033 - MGP_CASTEiJ_P0054426 Dennd1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054427.1 MGP_CASTEiJ_G0024896.1 mouse_genomes_project 2 36399575 36490515 - Dennd1a protein_coding retained_intron MGP_CASTEiJ_T0054428.1 MGP_CASTEiJ_G0024896.1 mouse_genomes_project 2 36404026 36408351 - Dennd1a protein_coding retained_intron MGP_CASTEiJ_T0054429.1 MGP_CASTEiJ_G0024896.1 mouse_genomes_project 2 36483271 36539029 - Dennd1a protein_coding retained_intron MGP_CASTEiJ_T0007026.1 MGP_CASTEiJ_G0005777.1 mouse_genomes_project 2 61521145 61525390 - Gm13565 lincRNA lincRNA MGP_CASTEiJ_T0007105.1 MGP_CASTEiJ_G0005842.1 mouse_genomes_project 2 115851314 115852577 - Gm29234 lincRNA lincRNA MGP_CASTEiJ_T0055823.1 MGP_CASTEiJ_G0025299.1 mouse_genomes_project 2 90664269 90665175 - MGP_CASTEiJ_P0055823 Olfr48 protein_coding protein_coding MGP_CASTEiJ_T0052449.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9618620 9695069 - Fam188a protein_coding processed_transcript MGP_CASTEiJ_T0052450.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9618620 9695091 - MGP_CASTEiJ_P0052450 Fam188a protein_coding protein_coding MGP_CASTEiJ_T0052451.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9618620 9695056 - MGP_CASTEiJ_P0052451 Fam188a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052452.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9618620 9695069 - MGP_CASTEiJ_P0052452 Fam188a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052453.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9618620 9695065 - MGP_CASTEiJ_P0052453 Fam188a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052454.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9618623 9695073 - MGP_CASTEiJ_P0052454 Fam188a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052455.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9618987 9628198 - MGP_CASTEiJ_P0052455 Fam188a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052456.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9619273 9672298 - Fam188a protein_coding retained_intron MGP_CASTEiJ_T0052457.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9619321 9694909 - Fam188a protein_coding processed_transcript MGP_CASTEiJ_T0052458.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9622286 9695031 - MGP_CASTEiJ_P0052458 Fam188a protein_coding protein_coding MGP_CASTEiJ_T0052459.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9628071 9695052 - Fam188a protein_coding retained_intron MGP_CASTEiJ_T0052460.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9637225 9639066 - Fam188a protein_coding retained_intron MGP_CASTEiJ_T0052461.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9637394 9695070 - MGP_CASTEiJ_P0052461 Fam188a protein_coding protein_coding MGP_CASTEiJ_T0052462.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9659192 9660026 - Fam188a protein_coding retained_intron MGP_CASTEiJ_T0052463.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9659893 9685709 - MGP_CASTEiJ_P0052463 Fam188a protein_coding protein_coding MGP_CASTEiJ_T0052464.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9674023 9695062 - Fam188a protein_coding retained_intron MGP_CASTEiJ_T0052465.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9674408 9685848 - Fam188a protein_coding retained_intron MGP_CASTEiJ_T0052466.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9675421 9695012 - MGP_CASTEiJ_P0052466 Fam188a protein_coding protein_coding MGP_CASTEiJ_T0052467.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9675432 9694870 - MGP_CASTEiJ_P0052467 Fam188a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052468.1 MGP_CASTEiJ_G0024547.1 mouse_genomes_project 2 9678359 9679091 - Fam188a protein_coding processed_transcript MGP_CASTEiJ_T0004043.1 MGP_CASTEiJ_G0003581.1 mouse_genomes_project 2 172071795 172078664 + Gm14320 antisense antisense MGP_CASTEiJ_T0058076.1 MGP_CASTEiJ_G0025795.1 mouse_genomes_project 2 152041229 152046515 + MGP_CASTEiJ_P0058076 Cst12 protein_coding protein_coding MGP_CASTEiJ_T0058077.1 MGP_CASTEiJ_G0025795.1 mouse_genomes_project 2 152041240 152046634 + MGP_CASTEiJ_P0058077 Cst12 protein_coding protein_coding MGP_CASTEiJ_T0052876.1 MGP_CASTEiJ_G0024619.1 mouse_genomes_project 2 22725156 22729110 - MGP_CASTEiJ_P0052876 Tor4a protein_coding protein_coding MGP_CASTEiJ_T0052877.1 MGP_CASTEiJ_G0024619.1 mouse_genomes_project 2 22727280 22728983 - MGP_CASTEiJ_P0052877 Tor4a protein_coding protein_coding MGP_CASTEiJ_T0052878.1 MGP_CASTEiJ_G0024619.1 mouse_genomes_project 2 22728015 22728995 - MGP_CASTEiJ_P0052878 Tor4a protein_coding protein_coding MGP_CASTEiJ_T0013007.1 MGP_CASTEiJ_G0011170.1 mouse_genomes_project 2 1856240 1856726 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054732.1 MGP_CASTEiJ_G0024950.1 mouse_genomes_project 2 58081077 58296764 + MGP_CASTEiJ_P0054732 Pkp4 protein_coding protein_coding MGP_CASTEiJ_T0054733.1 MGP_CASTEiJ_G0024950.1 mouse_genomes_project 2 58081077 58296763 + MGP_CASTEiJ_P0054733 Pkp4 protein_coding protein_coding MGP_CASTEiJ_T0054734.1 MGP_CASTEiJ_G0024950.1 mouse_genomes_project 2 58082220 58296383 + MGP_CASTEiJ_P0054734 Pkp4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054735.1 MGP_CASTEiJ_G0024950.1 mouse_genomes_project 2 58082220 58278330 + MGP_CASTEiJ_P0054735 Pkp4 protein_coding protein_coding MGP_CASTEiJ_T0054736.1 MGP_CASTEiJ_G0024950.1 mouse_genomes_project 2 58082248 58296767 + MGP_CASTEiJ_P0054736 Pkp4 protein_coding protein_coding MGP_CASTEiJ_T0054737.1 MGP_CASTEiJ_G0024950.1 mouse_genomes_project 2 58082260 58242772 + Pkp4 protein_coding processed_transcript MGP_CASTEiJ_T0054738.1 MGP_CASTEiJ_G0024950.1 mouse_genomes_project 2 58082283 58278333 + MGP_CASTEiJ_P0054738 Pkp4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054739.1 MGP_CASTEiJ_G0024950.1 mouse_genomes_project 2 58083167 58147022 + Pkp4 protein_coding processed_transcript MGP_CASTEiJ_T0054740.1 MGP_CASTEiJ_G0024950.1 mouse_genomes_project 2 58083167 58243004 + MGP_CASTEiJ_P0054740 Pkp4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054741.1 MGP_CASTEiJ_G0024950.1 mouse_genomes_project 2 58132764 58147037 + Pkp4 protein_coding processed_transcript MGP_CASTEiJ_T0054742.1 MGP_CASTEiJ_G0024950.1 mouse_genomes_project 2 58163410 58296764 + MGP_CASTEiJ_P0054742 Pkp4 protein_coding protein_coding MGP_CASTEiJ_T0054743.1 MGP_CASTEiJ_G0024950.1 mouse_genomes_project 2 58201826 58296766 + MGP_CASTEiJ_P0054743 Pkp4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054744.1 MGP_CASTEiJ_G0024950.1 mouse_genomes_project 2 58202972 58245875 + Pkp4 protein_coding processed_transcript MGP_CASTEiJ_T0054745.1 MGP_CASTEiJ_G0024950.1 mouse_genomes_project 2 58261013 58296764 + Pkp4 protein_coding processed_transcript MGP_CASTEiJ_T0054746.1 MGP_CASTEiJ_G0024950.1 mouse_genomes_project 2 58282724 58288657 + Pkp4 protein_coding processed_transcript MGP_CASTEiJ_T0098863.1 MGP_CASTEiJ_G0035788.1 mouse_genomes_project 2 1296366 1298557 + Gm36988 sense_intronic sense_intronic MGP_CASTEiJ_T0007121.1 MGP_CASTEiJ_G0005853.1 mouse_genomes_project 2 119160742 119164101 - Gm13982 lincRNA lincRNA MGP_CASTEiJ_T0013273.1 MGP_CASTEiJ_G0011436.1 mouse_genomes_project 2 104412533 104412953 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053653.1 MGP_CASTEiJ_G0024760.1 mouse_genomes_project 2 28122561 28124669 - MGP_CASTEiJ_P0053653 Dolk protein_coding protein_coding MGP_CASTEiJ_T0003924.1 MGP_CASTEiJ_G0003492.1 mouse_genomes_project 2 107038884 107039984 + Gm13954 antisense antisense MGP_CASTEiJ_T0053153.1 MGP_CASTEiJ_G0024675.1 mouse_genomes_project 2 23803092 23811152 - MGP_CASTEiJ_P0053153 Lhx3 protein_coding protein_coding MGP_CASTEiJ_T0053154.1 MGP_CASTEiJ_G0024675.1 mouse_genomes_project 2 23803096 23805752 - Lhx3 protein_coding retained_intron MGP_CASTEiJ_T0053155.1 MGP_CASTEiJ_G0024675.1 mouse_genomes_project 2 23803096 23809438 - MGP_CASTEiJ_P0053155 Lhx3 protein_coding protein_coding MGP_CASTEiJ_T0053156.1 MGP_CASTEiJ_G0024675.1 mouse_genomes_project 2 23805361 23806327 - Lhx3 protein_coding retained_intron MGP_CASTEiJ_T0099634.1 MGP_CASTEiJ_G0036547.1 mouse_genomes_project 2 47053519 47053639 - Gm25338 snRNA snRNA MGP_CASTEiJ_T0007036.1 MGP_CASTEiJ_G0005787.1 mouse_genomes_project 2 71609837 71611167 + Gm13746 lincRNA lincRNA MGP_CASTEiJ_T0054290.1 MGP_CASTEiJ_G0024850.1 mouse_genomes_project 2 33604779 33630820 - MGP_CASTEiJ_P0054290 4930402F06Rik protein_coding protein_coding MGP_CASTEiJ_T0054291.1 MGP_CASTEiJ_G0024850.1 mouse_genomes_project 2 33604799 33630702 - MGP_CASTEiJ_P0054291 4930402F06Rik protein_coding protein_coding MGP_CASTEiJ_T0100852.1 MGP_CASTEiJ_G0037765.1 mouse_genomes_project 2 17439446 17439537 + Gm25859 snoRNA snoRNA MGP_CASTEiJ_T0000985.1 MGP_CASTEiJ_G0000921.1 mouse_genomes_project 2 8436512 8438572 + TEC TEC MGP_CASTEiJ_T0017133.1 MGP_CASTEiJ_G0014789.1 mouse_genomes_project 2 142094676 142517982 - processed_transcript processed_transcript MGP_CASTEiJ_T0013229.1 MGP_CASTEiJ_G0011392.1 mouse_genomes_project 2 87793843 87794378 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013444.1 MGP_CASTEiJ_G0011607.1 mouse_genomes_project 2 171993283 171993759 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058768.1 MGP_CASTEiJ_G0025957.1 mouse_genomes_project 2 160941278 161022945 - MGP_CASTEiJ_P0058768 Mroh8 protein_coding protein_coding MGP_CASTEiJ_T0058769.1 MGP_CASTEiJ_G0025957.1 mouse_genomes_project 2 160956739 160958142 - Mroh8 protein_coding processed_transcript MGP_CASTEiJ_T0058770.1 MGP_CASTEiJ_G0025957.1 mouse_genomes_project 2 160979854 161022685 - Mroh8 protein_coding processed_transcript MGP_CASTEiJ_T0058771.1 MGP_CASTEiJ_G0025957.1 mouse_genomes_project 2 160996302 161000262 - Mroh8 protein_coding processed_transcript MGP_CASTEiJ_T0058772.1 MGP_CASTEiJ_G0025957.1 mouse_genomes_project 2 161006309 161022945 - Mroh8 protein_coding processed_transcript MGP_CASTEiJ_T0010184.1 MGP_CASTEiJ_G0008372.1 mouse_genomes_project 2 156110987 156111089 - Gm23802 miRNA miRNA MGP_CASTEiJ_T0055696.1 MGP_CASTEiJ_G0025197.1 mouse_genomes_project 2 87986645 87987566 - MGP_CASTEiJ_P0055696 Olfr1126 protein_coding protein_coding MGP_CASTEiJ_T0058234.1 MGP_CASTEiJ_G0025844.1 mouse_genomes_project 2 155834164 155837353 + MGP_CASTEiJ_P0058234 Defb28 protein_coding protein_coding MGP_CASTEiJ_T0054126.1 MGP_CASTEiJ_G0024826.1 mouse_genomes_project 2 31074899 31184123 - MGP_CASTEiJ_P0054126 Garnl3 protein_coding protein_coding MGP_CASTEiJ_T0054127.1 MGP_CASTEiJ_G0024826.1 mouse_genomes_project 2 31075049 31183230 - MGP_CASTEiJ_P0054127 Garnl3 protein_coding protein_coding MGP_CASTEiJ_T0054128.1 MGP_CASTEiJ_G0024826.1 mouse_genomes_project 2 31075049 31231775 - MGP_CASTEiJ_P0054128 Garnl3 protein_coding protein_coding MGP_CASTEiJ_T0054129.1 MGP_CASTEiJ_G0024826.1 mouse_genomes_project 2 31094743 31098440 - Garnl3 protein_coding retained_intron MGP_CASTEiJ_T0054130.1 MGP_CASTEiJ_G0024826.1 mouse_genomes_project 2 31099039 31204194 - Garnl3 protein_coding processed_transcript MGP_CASTEiJ_T0054131.1 MGP_CASTEiJ_G0024826.1 mouse_genomes_project 2 31105236 31127419 - MGP_CASTEiJ_P0054131 Garnl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054132.1 MGP_CASTEiJ_G0024826.1 mouse_genomes_project 2 31109332 31119844 - Garnl3 protein_coding retained_intron MGP_CASTEiJ_T0054133.1 MGP_CASTEiJ_G0024826.1 mouse_genomes_project 2 31141201 31183670 - Garnl3 protein_coding processed_transcript MGP_CASTEiJ_T0054134.1 MGP_CASTEiJ_G0024826.1 mouse_genomes_project 2 31148766 31183419 - Garnl3 protein_coding processed_transcript MGP_CASTEiJ_T0054135.1 MGP_CASTEiJ_G0024826.1 mouse_genomes_project 2 31148771 31231989 - MGP_CASTEiJ_P0054135 Garnl3 protein_coding protein_coding MGP_CASTEiJ_T0054136.1 MGP_CASTEiJ_G0024826.1 mouse_genomes_project 2 31148773 31231993 - MGP_CASTEiJ_P0054136 Garnl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054137.1 MGP_CASTEiJ_G0024826.1 mouse_genomes_project 2 31148818 31230947 - MGP_CASTEiJ_P0054137 Garnl3 protein_coding protein_coding MGP_CASTEiJ_T0010053.1 MGP_CASTEiJ_G0008241.1 mouse_genomes_project 2 7719818 7719902 + Mir466m miRNA miRNA MGP_CASTEiJ_T0013232.1 MGP_CASTEiJ_G0011395.1 mouse_genomes_project 2 87854668 87854900 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053095.1 MGP_CASTEiJ_G0024659.1 mouse_genomes_project 2 23210628 23213723 + MGP_CASTEiJ_P0053095 Lcn8 protein_coding protein_coding MGP_CASTEiJ_T0052933.1 MGP_CASTEiJ_G0024632.1 mouse_genomes_project 2 22804000 22819848 + MGP_CASTEiJ_P0052933 Anapc2 protein_coding protein_coding MGP_CASTEiJ_T0052934.1 MGP_CASTEiJ_G0024632.1 mouse_genomes_project 2 22804105 22807883 + Anapc2 protein_coding processed_transcript MGP_CASTEiJ_T0052935.1 MGP_CASTEiJ_G0024632.1 mouse_genomes_project 2 22804988 22811185 + MGP_CASTEiJ_P0052935 Anapc2 protein_coding protein_coding MGP_CASTEiJ_T0052936.1 MGP_CASTEiJ_G0024632.1 mouse_genomes_project 2 22811772 22813236 + Anapc2 protein_coding processed_transcript MGP_CASTEiJ_T0054017.1 MGP_CASTEiJ_G0024810.1 mouse_genomes_project 2 30642455 30662125 + MGP_CASTEiJ_P0054017 St6galnac6 protein_coding protein_coding MGP_CASTEiJ_T0054018.1 MGP_CASTEiJ_G0024810.1 mouse_genomes_project 2 30642472 30661176 + MGP_CASTEiJ_P0054018 St6galnac6 protein_coding protein_coding MGP_CASTEiJ_T0054019.1 MGP_CASTEiJ_G0024810.1 mouse_genomes_project 2 30649577 30663409 + MGP_CASTEiJ_P0054019 St6galnac6 protein_coding protein_coding MGP_CASTEiJ_T0054020.1 MGP_CASTEiJ_G0024810.1 mouse_genomes_project 2 30649610 30663402 + MGP_CASTEiJ_P0054020 St6galnac6 protein_coding protein_coding MGP_CASTEiJ_T0054021.1 MGP_CASTEiJ_G0024810.1 mouse_genomes_project 2 30649624 30663402 + MGP_CASTEiJ_P0054021 St6galnac6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054022.1 MGP_CASTEiJ_G0024810.1 mouse_genomes_project 2 30650655 30663400 + MGP_CASTEiJ_P0054022 St6galnac6 protein_coding protein_coding MGP_CASTEiJ_T0054023.1 MGP_CASTEiJ_G0024810.1 mouse_genomes_project 2 30650669 30659323 + St6galnac6 protein_coding retained_intron MGP_CASTEiJ_T0054024.1 MGP_CASTEiJ_G0024810.1 mouse_genomes_project 2 30651048 30663400 + MGP_CASTEiJ_P0054024 St6galnac6 protein_coding protein_coding MGP_CASTEiJ_T0054025.1 MGP_CASTEiJ_G0024810.1 mouse_genomes_project 2 30651301 30654913 + MGP_CASTEiJ_P0054025 St6galnac6 protein_coding protein_coding MGP_CASTEiJ_T0054026.1 MGP_CASTEiJ_G0024810.1 mouse_genomes_project 2 30651597 30657507 + MGP_CASTEiJ_P0054026 St6galnac6 protein_coding protein_coding MGP_CASTEiJ_T0054027.1 MGP_CASTEiJ_G0024810.1 mouse_genomes_project 2 30651627 30657527 + MGP_CASTEiJ_P0054027 St6galnac6 protein_coding protein_coding MGP_CASTEiJ_T0055619.1 MGP_CASTEiJ_G0025123.1 mouse_genomes_project 2 86032870 86036376 - MGP_CASTEiJ_P0055619 protein_coding protein_coding MGP_CASTEiJ_T0053426.1 MGP_CASTEiJ_G0024725.1 mouse_genomes_project 2 26338652 26353098 - MGP_CASTEiJ_P0053426 Gfi1b protein_coding protein_coding MGP_CASTEiJ_T0053427.1 MGP_CASTEiJ_G0024725.1 mouse_genomes_project 2 26338657 26353061 - MGP_CASTEiJ_P0053427 Gfi1b protein_coding protein_coding MGP_CASTEiJ_T0053428.1 MGP_CASTEiJ_G0024725.1 mouse_genomes_project 2 26345925 26346547 - Gfi1b protein_coding processed_transcript MGP_CASTEiJ_T0053429.1 MGP_CASTEiJ_G0024725.1 mouse_genomes_project 2 26345932 26353098 - Gfi1b protein_coding processed_transcript MGP_CASTEiJ_T0052751.1 MGP_CASTEiJ_G0024602.1 mouse_genomes_project 2 21660129 21668749 - MGP_CASTEiJ_P0052751 Il1f9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057850.1 MGP_CASTEiJ_G0025739.1 mouse_genomes_project 2 139500947 139574896 + MGP_CASTEiJ_P0057850 Snap25 protein_coding protein_coding MGP_CASTEiJ_T0057851.1 MGP_CASTEiJ_G0025739.1 mouse_genomes_project 2 139500948 139555330 + Snap25 protein_coding retained_intron MGP_CASTEiJ_T0057852.1 MGP_CASTEiJ_G0025739.1 mouse_genomes_project 2 139500972 139573815 + MGP_CASTEiJ_P0057852 Snap25 protein_coding protein_coding MGP_CASTEiJ_T0056607.1 MGP_CASTEiJ_G0025479.1 mouse_genomes_project 2 115310300 115333066 - MGP_CASTEiJ_P0056607 Grem1 protein_coding protein_coding MGP_CASTEiJ_T0059569.1 MGP_CASTEiJ_G0026148.1 mouse_genomes_project 2 179682038 179806721 + MGP_CASTEiJ_P0059569 Zfp831 protein_coding unknown_likely_coding MGP_CASTEiJ_T0013035.1 MGP_CASTEiJ_G0011198.1 mouse_genomes_project 2 12766960 12767933 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013031.1 MGP_CASTEiJ_G0011194.1 mouse_genomes_project 2 12075241 12077086 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054995.1 MGP_CASTEiJ_G0024990.1 mouse_genomes_project 2 68520448 68582046 + MGP_CASTEiJ_P0054995 Nostrin protein_coding protein_coding MGP_CASTEiJ_T0054996.1 MGP_CASTEiJ_G0024990.1 mouse_genomes_project 2 68571212 68578281 + Nostrin protein_coding processed_transcript MGP_CASTEiJ_T0010124.1 MGP_CASTEiJ_G0008312.1 mouse_genomes_project 2 30769721 30769794 - Mir3960 miRNA miRNA MGP_CASTEiJ_T0013281.1 MGP_CASTEiJ_G0011444.1 mouse_genomes_project 2 105825341 105826155 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057130.1 MGP_CASTEiJ_G0025577.1 mouse_genomes_project 2 123426019 123432847 + MGP_CASTEiJ_P0057130 Hypk protein_coding protein_coding MGP_CASTEiJ_T0057131.1 MGP_CASTEiJ_G0025577.1 mouse_genomes_project 2 123429447 123432773 + Hypk protein_coding retained_intron MGP_CASTEiJ_T0057132.1 MGP_CASTEiJ_G0025577.1 mouse_genomes_project 2 123429717 123433009 + MGP_CASTEiJ_P0057132 Hypk protein_coding protein_coding MGP_CASTEiJ_T0057133.1 MGP_CASTEiJ_G0025577.1 mouse_genomes_project 2 123429878 123431061 + Hypk protein_coding retained_intron MGP_CASTEiJ_T0057134.1 MGP_CASTEiJ_G0025577.1 mouse_genomes_project 2 123429888 123432700 + Hypk protein_coding processed_transcript MGP_CASTEiJ_T0058083.1 MGP_CASTEiJ_G0025799.1 mouse_genomes_project 2 152111611 152115588 - MGP_CASTEiJ_P0058083 9230104L09Rik protein_coding protein_coding MGP_CASTEiJ_T0058084.1 MGP_CASTEiJ_G0025799.1 mouse_genomes_project 2 152111804 152129335 - 9230104L09Rik protein_coding processed_transcript MGP_CASTEiJ_T0058583.1 MGP_CASTEiJ_G0025931.1 mouse_genomes_project 2 159647605 159657798 + MGP_CASTEiJ_P0058583 Ergic3 protein_coding protein_coding MGP_CASTEiJ_T0058584.1 MGP_CASTEiJ_G0025931.1 mouse_genomes_project 2 159647636 159657802 + MGP_CASTEiJ_P0058584 Ergic3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058585.1 MGP_CASTEiJ_G0025931.1 mouse_genomes_project 2 159647666 159657798 + MGP_CASTEiJ_P0058585 Ergic3 protein_coding protein_coding MGP_CASTEiJ_T0058586.1 MGP_CASTEiJ_G0025931.1 mouse_genomes_project 2 159647783 159650779 + Ergic3 protein_coding retained_intron MGP_CASTEiJ_T0058587.1 MGP_CASTEiJ_G0025931.1 mouse_genomes_project 2 159648179 159657157 + MGP_CASTEiJ_P0058587 Ergic3 protein_coding protein_coding MGP_CASTEiJ_T0058588.1 MGP_CASTEiJ_G0025931.1 mouse_genomes_project 2 159649999 159657606 + MGP_CASTEiJ_P0058588 Ergic3 protein_coding protein_coding MGP_CASTEiJ_T0058589.1 MGP_CASTEiJ_G0025931.1 mouse_genomes_project 2 159656027 159657669 + Ergic3 protein_coding processed_transcript MGP_CASTEiJ_T0058590.1 MGP_CASTEiJ_G0025931.1 mouse_genomes_project 2 159656733 159657615 + Ergic3 protein_coding processed_transcript MGP_CASTEiJ_T0058591.1 MGP_CASTEiJ_G0025931.1 mouse_genomes_project 2 159657012 159657798 + Ergic3 protein_coding retained_intron MGP_CASTEiJ_T0058592.1 MGP_CASTEiJ_G0025931.1 mouse_genomes_project 2 159657064 159657798 + Ergic3 protein_coding retained_intron MGP_CASTEiJ_T0058593.1 MGP_CASTEiJ_G0025931.1 mouse_genomes_project 2 159657166 159657796 + Ergic3 protein_coding retained_intron MGP_CASTEiJ_T0055683.1 MGP_CASTEiJ_G0025184.1 mouse_genomes_project 2 87625650 87626589 - MGP_CASTEiJ_P0055683 Olfr259 protein_coding protein_coding MGP_CASTEiJ_T0052429.1 MGP_CASTEiJ_G0024545.1 mouse_genomes_project 2 9078687 9079681 + MGP_CASTEiJ_P0052429 Ankrd16 protein_coding protein_coding MGP_CASTEiJ_T0052430.1 MGP_CASTEiJ_G0024545.1 mouse_genomes_project 2 9079302 9091179 + MGP_CASTEiJ_P0052430 Ankrd16 protein_coding protein_coding MGP_CASTEiJ_T0052431.1 MGP_CASTEiJ_G0024545.1 mouse_genomes_project 2 9079344 9091183 + Ankrd16 protein_coding retained_intron MGP_CASTEiJ_T0052432.1 MGP_CASTEiJ_G0024545.1 mouse_genomes_project 2 9079347 9091157 + Ankrd16 protein_coding retained_intron MGP_CASTEiJ_T0052433.1 MGP_CASTEiJ_G0024545.1 mouse_genomes_project 2 9079385 9091179 + MGP_CASTEiJ_P0052433 Ankrd16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052434.1 MGP_CASTEiJ_G0024545.1 mouse_genomes_project 2 9079393 9082103 + Ankrd16 protein_coding retained_intron MGP_CASTEiJ_T0052435.1 MGP_CASTEiJ_G0024545.1 mouse_genomes_project 2 9080688 9090622 + MGP_CASTEiJ_P0052435 Ankrd16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052436.1 MGP_CASTEiJ_G0024545.1 mouse_genomes_project 2 9084242 9091174 + Ankrd16 protein_coding retained_intron MGP_CASTEiJ_T0052437.1 MGP_CASTEiJ_G0024545.1 mouse_genomes_project 2 9084262 9090768 + Ankrd16 protein_coding retained_intron MGP_CASTEiJ_T0052438.1 MGP_CASTEiJ_G0024545.1 mouse_genomes_project 2 9085180 9091155 + Ankrd16 protein_coding retained_intron MGP_CASTEiJ_T0052439.1 MGP_CASTEiJ_G0024545.1 mouse_genomes_project 2 9085268 9091150 + MGP_CASTEiJ_P0052439 Ankrd16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052440.1 MGP_CASTEiJ_G0024545.1 mouse_genomes_project 2 9087101 9090976 + Ankrd16 protein_coding retained_intron MGP_CASTEiJ_T0052234.1 MGP_CASTEiJ_G0024515.1 mouse_genomes_project 2 2028462 2050333 - MGP_CASTEiJ_P0052234 Mcm10 protein_coding protein_coding MGP_CASTEiJ_T0052235.1 MGP_CASTEiJ_G0024515.1 mouse_genomes_project 2 2029471 2039962 - Mcm10 protein_coding retained_intron MGP_CASTEiJ_T0052236.1 MGP_CASTEiJ_G0024515.1 mouse_genomes_project 2 2029471 2034296 - Mcm10 protein_coding retained_intron MGP_CASTEiJ_T0052237.1 MGP_CASTEiJ_G0024515.1 mouse_genomes_project 2 2029471 2050713 - MGP_CASTEiJ_P0052237 Mcm10 protein_coding protein_coding MGP_CASTEiJ_T0052238.1 MGP_CASTEiJ_G0024515.1 mouse_genomes_project 2 2029778 2031675 - Mcm10 protein_coding retained_intron MGP_CASTEiJ_T0052239.1 MGP_CASTEiJ_G0024515.1 mouse_genomes_project 2 2030007 2033242 - Mcm10 protein_coding retained_intron MGP_CASTEiJ_T0052240.1 MGP_CASTEiJ_G0024515.1 mouse_genomes_project 2 2037497 2043650 - Mcm10 protein_coding retained_intron MGP_CASTEiJ_T0052241.1 MGP_CASTEiJ_G0024515.1 mouse_genomes_project 2 2042592 2043867 - Mcm10 protein_coding retained_intron MGP_CASTEiJ_T0052242.1 MGP_CASTEiJ_G0024515.1 mouse_genomes_project 2 2045026 2050675 - Mcm10 protein_coding processed_transcript MGP_CASTEiJ_T0052243.1 MGP_CASTEiJ_G0024515.1 mouse_genomes_project 2 2045551 2050637 - Mcm10 protein_coding retained_intron MGP_CASTEiJ_T0056303.1 MGP_CASTEiJ_G0025386.1 mouse_genomes_project 2 104184973 104242026 - MGP_CASTEiJ_P0056303 Pdhx protein_coding protein_coding MGP_CASTEiJ_T0056304.1 MGP_CASTEiJ_G0025386.1 mouse_genomes_project 2 104198424 104241848 - MGP_CASTEiJ_P0056304 Pdhx protein_coding protein_coding MGP_CASTEiJ_T0056305.1 MGP_CASTEiJ_G0025386.1 mouse_genomes_project 2 104206137 104241975 - MGP_CASTEiJ_P0056305 Pdhx protein_coding protein_coding MGP_CASTEiJ_T0055644.1 MGP_CASTEiJ_G0025146.1 mouse_genomes_project 2 86585997 86586870 - MGP_CASTEiJ_P0055644 Olfr1040 protein_coding protein_coding MGP_CASTEiJ_T0013057.1 MGP_CASTEiJ_G0011220.1 mouse_genomes_project 2 20455214 20455751 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052888.1 MGP_CASTEiJ_G0024621.1 mouse_genomes_project 2 22744430 22745884 - Stpg3 protein_coding processed_transcript MGP_CASTEiJ_T0052889.1 MGP_CASTEiJ_G0024621.1 mouse_genomes_project 2 22744431 22746868 - Stpg3 protein_coding processed_transcript MGP_CASTEiJ_T0052890.1 MGP_CASTEiJ_G0024621.1 mouse_genomes_project 2 22744782 22746867 - MGP_CASTEiJ_P0052890 Stpg3 protein_coding protein_coding MGP_CASTEiJ_T0052891.1 MGP_CASTEiJ_G0024621.1 mouse_genomes_project 2 22744994 22746874 - MGP_CASTEiJ_P0052891 Stpg3 protein_coding protein_coding MGP_CASTEiJ_T0052892.1 MGP_CASTEiJ_G0024621.1 mouse_genomes_project 2 22745150 22746828 - Stpg3 protein_coding processed_transcript MGP_CASTEiJ_T0059290.1 MGP_CASTEiJ_G0026079.1 mouse_genomes_project 2 171150353 171248351 + MGP_CASTEiJ_P0059290 Arfgef2 protein_coding protein_coding MGP_CASTEiJ_T0059291.1 MGP_CASTEiJ_G0026079.1 mouse_genomes_project 2 171168938 171196901 + MGP_CASTEiJ_P0059291 Arfgef2 protein_coding protein_coding MGP_CASTEiJ_T0013003.1 MGP_CASTEiJ_G0011166.1 mouse_genomes_project 2 665403 666191 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056462.1 MGP_CASTEiJ_G0025416.1 mouse_genomes_project 2 107030569 107239321 - MGP_CASTEiJ_P0056462 Elp4 protein_coding protein_coding MGP_CASTEiJ_T0056463.1 MGP_CASTEiJ_G0025416.1 mouse_genomes_project 2 107062058 107202137 - MGP_CASTEiJ_P0056463 Elp4 protein_coding protein_coding MGP_CASTEiJ_T0056464.1 MGP_CASTEiJ_G0025416.1 mouse_genomes_project 2 107126388 107148210 - Elp4 protein_coding retained_intron MGP_CASTEiJ_T0056465.1 MGP_CASTEiJ_G0025416.1 mouse_genomes_project 2 107202224 107239240 - Elp4 protein_coding processed_transcript MGP_CASTEiJ_T0011161.1 MGP_CASTEiJ_G0009349.1 mouse_genomes_project 2 21286519 21286689 + Gm26323 misc_RNA misc_RNA MGP_CASTEiJ_T0054988.1 MGP_CASTEiJ_G0024989.1 mouse_genomes_project 2 68237733 68496259 + MGP_CASTEiJ_P0054988 Cers6 protein_coding protein_coding MGP_CASTEiJ_T0054989.1 MGP_CASTEiJ_G0024989.1 mouse_genomes_project 2 68237734 68239017 + Cers6 protein_coding retained_intron MGP_CASTEiJ_T0054990.1 MGP_CASTEiJ_G0024989.1 mouse_genomes_project 2 68237742 68453229 + Cers6 protein_coding retained_intron MGP_CASTEiJ_T0054991.1 MGP_CASTEiJ_G0024989.1 mouse_genomes_project 2 68237762 68308370 + Cers6 protein_coding retained_intron MGP_CASTEiJ_T0054992.1 MGP_CASTEiJ_G0024989.1 mouse_genomes_project 2 68237878 68490840 + MGP_CASTEiJ_P0054992 Cers6 protein_coding protein_coding MGP_CASTEiJ_T0054993.1 MGP_CASTEiJ_G0024989.1 mouse_genomes_project 2 68321351 68427445 + Cers6 protein_coding retained_intron MGP_CASTEiJ_T0054994.1 MGP_CASTEiJ_G0024989.1 mouse_genomes_project 2 68333954 68427801 + Cers6 protein_coding retained_intron MGP_CASTEiJ_T0054232.1 MGP_CASTEiJ_G0024841.1 mouse_genomes_project 2 33098920 33119111 - MGP_CASTEiJ_P0054232 Phf19 protein_coding protein_coding MGP_CASTEiJ_T0054233.1 MGP_CASTEiJ_G0024841.1 mouse_genomes_project 2 33098947 33109322 - Phf19 protein_coding processed_transcript MGP_CASTEiJ_T0054234.1 MGP_CASTEiJ_G0024841.1 mouse_genomes_project 2 33103246 33110077 - Phf19 protein_coding processed_transcript MGP_CASTEiJ_T0054235.1 MGP_CASTEiJ_G0024841.1 mouse_genomes_project 2 33104133 33119161 - Phf19 protein_coding retained_intron MGP_CASTEiJ_T0054236.1 MGP_CASTEiJ_G0024841.1 mouse_genomes_project 2 33112268 33119152 - MGP_CASTEiJ_P0054236 Phf19 protein_coding protein_coding MGP_CASTEiJ_T0053353.1 MGP_CASTEiJ_G0024710.1 mouse_genomes_project 2 24897659 25067039 - MGP_CASTEiJ_P0053353 Vav2 protein_coding protein_coding MGP_CASTEiJ_T0053354.1 MGP_CASTEiJ_G0024710.1 mouse_genomes_project 2 24897659 25066918 - MGP_CASTEiJ_P0053354 Vav2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053355.1 MGP_CASTEiJ_G0024710.1 mouse_genomes_project 2 24904011 24912486 - Vav2 protein_coding processed_transcript MGP_CASTEiJ_T0053356.1 MGP_CASTEiJ_G0024710.1 mouse_genomes_project 2 24904475 24914023 - Vav2 protein_coding processed_transcript MGP_CASTEiJ_T0053357.1 MGP_CASTEiJ_G0024710.1 mouse_genomes_project 2 24905132 24907353 - Vav2 protein_coding processed_transcript MGP_CASTEiJ_T0053358.1 MGP_CASTEiJ_G0024710.1 mouse_genomes_project 2 24905132 24907430 - Vav2 protein_coding processed_transcript MGP_CASTEiJ_T0053359.1 MGP_CASTEiJ_G0024710.1 mouse_genomes_project 2 24937205 24980505 - Vav2 protein_coding processed_transcript MGP_CASTEiJ_T0010104.1 MGP_CASTEiJ_G0008292.1 mouse_genomes_project 2 24213895 24213968 + Mir126a miRNA miRNA MGP_CASTEiJ_T0010204.1 MGP_CASTEiJ_G0008392.1 mouse_genomes_project 2 179320920 179320999 - Mir296 miRNA miRNA MGP_CASTEiJ_T0059093.1 MGP_CASTEiJ_G0026039.1 mouse_genomes_project 2 168812660 168819539 - MGP_CASTEiJ_P0059093 Wfdc9 protein_coding protein_coding MGP_CASTEiJ_T0059094.1 MGP_CASTEiJ_G0026039.1 mouse_genomes_project 2 168812816 168814783 - MGP_CASTEiJ_P0059094 Wfdc9 protein_coding protein_coding MGP_CASTEiJ_T0013011.1 MGP_CASTEiJ_G0011174.1 mouse_genomes_project 2 2350174 2350399 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052776.1 MGP_CASTEiJ_G0024607.1 mouse_genomes_project 2 21871090 21935492 - MGP_CASTEiJ_P0052776 Pax8 protein_coding protein_coding MGP_CASTEiJ_T0052777.1 MGP_CASTEiJ_G0024607.1 mouse_genomes_project 2 21871926 21873611 - Pax8 protein_coding retained_intron MGP_CASTEiJ_T0052778.1 MGP_CASTEiJ_G0024607.1 mouse_genomes_project 2 21872048 21934985 - MGP_CASTEiJ_P0052778 Pax8 protein_coding protein_coding MGP_CASTEiJ_T0052779.1 MGP_CASTEiJ_G0024607.1 mouse_genomes_project 2 21872059 21935457 - MGP_CASTEiJ_P0052779 Pax8 protein_coding protein_coding MGP_CASTEiJ_T0052780.1 MGP_CASTEiJ_G0024607.1 mouse_genomes_project 2 21879985 21935467 - MGP_CASTEiJ_P0052780 Pax8 protein_coding protein_coding MGP_CASTEiJ_T0052781.1 MGP_CASTEiJ_G0024607.1 mouse_genomes_project 2 21894271 21935103 - MGP_CASTEiJ_P0052781 Pax8 protein_coding protein_coding MGP_CASTEiJ_T0052782.1 MGP_CASTEiJ_G0024607.1 mouse_genomes_project 2 21896092 21898995 - Pax8 protein_coding processed_transcript MGP_CASTEiJ_T0052783.1 MGP_CASTEiJ_G0024607.1 mouse_genomes_project 2 21930691 21935467 - Pax8 protein_coding retained_intron MGP_CASTEiJ_T0056536.1 MGP_CASTEiJ_G0025438.1 mouse_genomes_project 2 112694790 112695729 + MGP_CASTEiJ_P0056536 Olfr1276 protein_coding protein_coding MGP_CASTEiJ_T0056864.1 MGP_CASTEiJ_G0025538.1 mouse_genomes_project 2 121917657 121922627 + MGP_CASTEiJ_P0056864 Jmjd7 protein_coding protein_coding MGP_CASTEiJ_T0056866.1 MGP_CASTEiJ_G0025538.1 mouse_genomes_project 2 121917678 121920570 + MGP_CASTEiJ_P0056866 Jmjd7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056869.1 MGP_CASTEiJ_G0025538.1 mouse_genomes_project 2 121917690 121921908 + Jmjd7 protein_coding processed_transcript MGP_CASTEiJ_T0056870.1 MGP_CASTEiJ_G0025538.1 mouse_genomes_project 2 121917731 121921425 + Jmjd7 protein_coding processed_transcript MGP_CASTEiJ_T0056871.1 MGP_CASTEiJ_G0025538.1 mouse_genomes_project 2 121917768 121920417 + MGP_CASTEiJ_P0056871 Jmjd7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055364.1 MGP_CASTEiJ_G0025065.1 mouse_genomes_project 2 76958767 77129277 - MGP_CASTEiJ_P0055364 Ccdc141 protein_coding protein_coding MGP_CASTEiJ_T0055365.1 MGP_CASTEiJ_G0025065.1 mouse_genomes_project 2 76960351 77131421 - MGP_CASTEiJ_P0055365 Ccdc141 protein_coding unknown_likely_coding MGP_CASTEiJ_T0055366.1 MGP_CASTEiJ_G0025065.1 mouse_genomes_project 2 76960408 76968737 - MGP_CASTEiJ_P0055366 Ccdc141 protein_coding protein_coding MGP_CASTEiJ_T0055367.1 MGP_CASTEiJ_G0025065.1 mouse_genomes_project 2 76963876 76971518 - Ccdc141 protein_coding processed_transcript MGP_CASTEiJ_T0055368.1 MGP_CASTEiJ_G0025065.1 mouse_genomes_project 2 76972209 76980212 - Ccdc141 protein_coding retained_intron MGP_CASTEiJ_T0055369.1 MGP_CASTEiJ_G0025065.1 mouse_genomes_project 2 76980209 76994357 - Ccdc141 protein_coding retained_intron MGP_CASTEiJ_T0055370.1 MGP_CASTEiJ_G0025065.1 mouse_genomes_project 2 76980209 76995005 - MGP_CASTEiJ_P0055370 Ccdc141 protein_coding protein_coding MGP_CASTEiJ_T0055371.1 MGP_CASTEiJ_G0025065.1 mouse_genomes_project 2 76995241 77129278 - Ccdc141 protein_coding retained_intron MGP_CASTEiJ_T0055372.1 MGP_CASTEiJ_G0025065.1 mouse_genomes_project 2 77029166 77129252 - Ccdc141 protein_coding retained_intron MGP_CASTEiJ_T0055373.1 MGP_CASTEiJ_G0025065.1 mouse_genomes_project 2 77090767 77129242 - MGP_CASTEiJ_P0055373 Ccdc141 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055374.1 MGP_CASTEiJ_G0025065.1 mouse_genomes_project 2 77120613 77129218 - MGP_CASTEiJ_P0055374 Ccdc141 protein_coding protein_coding MGP_CASTEiJ_T0059529.1 MGP_CASTEiJ_G0026140.1 mouse_genomes_project 2 179160740 179173488 + MGP_CASTEiJ_P0059529 Npepl1 protein_coding protein_coding MGP_CASTEiJ_T0059530.1 MGP_CASTEiJ_G0026140.1 mouse_genomes_project 2 179161545 179170793 + MGP_CASTEiJ_P0059530 Npepl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059531.1 MGP_CASTEiJ_G0026140.1 mouse_genomes_project 2 179161571 179173104 + Npepl1 protein_coding retained_intron MGP_CASTEiJ_T0059532.1 MGP_CASTEiJ_G0026140.1 mouse_genomes_project 2 179161964 179166497 + Npepl1 protein_coding retained_intron MGP_CASTEiJ_T0017049.1 MGP_CASTEiJ_G0014750.1 mouse_genomes_project 2 87656127 87660363 - Gm13734 processed_transcript processed_transcript MGP_CASTEiJ_T0054950.1 MGP_CASTEiJ_G0024980.1 mouse_genomes_project 2 65512229 65559146 - MGP_CASTEiJ_P0054950 Scn1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054951.1 MGP_CASTEiJ_G0024980.1 mouse_genomes_project 2 65512232 65663777 - MGP_CASTEiJ_P0054951 Scn1a protein_coding protein_coding MGP_CASTEiJ_T0054952.1 MGP_CASTEiJ_G0024980.1 mouse_genomes_project 2 65512233 65702106 - MGP_CASTEiJ_P0054952 Scn1a protein_coding protein_coding MGP_CASTEiJ_T0054953.1 MGP_CASTEiJ_G0024980.1 mouse_genomes_project 2 65512235 65604589 - MGP_CASTEiJ_P0054953 Scn1a protein_coding protein_coding MGP_CASTEiJ_T0054954.1 MGP_CASTEiJ_G0024980.1 mouse_genomes_project 2 65514332 65559339 - MGP_CASTEiJ_P0054954 Scn1a protein_coding protein_coding MGP_CASTEiJ_T0054955.1 MGP_CASTEiJ_G0024980.1 mouse_genomes_project 2 65568231 65702109 - MGP_CASTEiJ_P0054955 Scn1a protein_coding protein_coding MGP_CASTEiJ_T0054956.1 MGP_CASTEiJ_G0024980.1 mouse_genomes_project 2 65601778 65702083 - Scn1a protein_coding retained_intron MGP_CASTEiJ_T0004033.1 MGP_CASTEiJ_G0003574.1 mouse_genomes_project 2 168924230 168942151 - Gm11457 antisense antisense MGP_CASTEiJ_T0004034.1 MGP_CASTEiJ_G0003574.1 mouse_genomes_project 2 168924240 168942156 - Gm11457 antisense antisense MGP_CASTEiJ_T0004035.1 MGP_CASTEiJ_G0003574.1 mouse_genomes_project 2 168924252 168942198 - Gm11457 antisense antisense MGP_CASTEiJ_T0007013.1 MGP_CASTEiJ_G0005766.1 mouse_genomes_project 2 50007470 50007951 + Gm28639 lincRNA lincRNA MGP_CASTEiJ_T0013401.1 MGP_CASTEiJ_G0011564.1 mouse_genomes_project 2 155930812 155931029 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055627.1 MGP_CASTEiJ_G0025130.1 mouse_genomes_project 2 86160869 86161808 + MGP_CASTEiJ_P0055627 Olfr1015 protein_coding protein_coding MGP_CASTEiJ_T0055425.1 MGP_CASTEiJ_G0025072.1 mouse_genomes_project 2 79565689 79569921 - MGP_CASTEiJ_P0055425 Neurod1 protein_coding protein_coding MGP_CASTEiJ_T0055813.1 MGP_CASTEiJ_G0025291.1 mouse_genomes_project 2 90515283 90516202 - MGP_CASTEiJ_P0055813 protein_coding protein_coding MGP_CASTEiJ_T0058062.1 MGP_CASTEiJ_G0025788.1 mouse_genomes_project 2 151685913 151692391 - MGP_CASTEiJ_P0058062 Cd93 protein_coding protein_coding MGP_CASTEiJ_T0058512.1 MGP_CASTEiJ_G0025918.1 mouse_genomes_project 2 159234558 159299259 - MGP_CASTEiJ_P0058512 Trpc4ap protein_coding protein_coding MGP_CASTEiJ_T0058513.1 MGP_CASTEiJ_G0025918.1 mouse_genomes_project 2 159234595 159299207 - MGP_CASTEiJ_P0058513 Trpc4ap protein_coding protein_coding MGP_CASTEiJ_T0058514.1 MGP_CASTEiJ_G0025918.1 mouse_genomes_project 2 159235032 159238033 - Trpc4ap protein_coding processed_transcript MGP_CASTEiJ_T0058515.1 MGP_CASTEiJ_G0025918.1 mouse_genomes_project 2 159235883 159238079 - Trpc4ap protein_coding retained_intron MGP_CASTEiJ_T0058516.1 MGP_CASTEiJ_G0025918.1 mouse_genomes_project 2 159239274 159280073 - Trpc4ap protein_coding retained_intron MGP_CASTEiJ_T0058517.1 MGP_CASTEiJ_G0025918.1 mouse_genomes_project 2 159239281 159240844 - Trpc4ap protein_coding retained_intron MGP_CASTEiJ_T0058518.1 MGP_CASTEiJ_G0025918.1 mouse_genomes_project 2 159243892 159270187 - Trpc4ap protein_coding retained_intron MGP_CASTEiJ_T0058519.1 MGP_CASTEiJ_G0025918.1 mouse_genomes_project 2 159257726 159299257 - Trpc4ap protein_coding retained_intron MGP_CASTEiJ_T0058520.1 MGP_CASTEiJ_G0025918.1 mouse_genomes_project 2 159272192 159274811 - Trpc4ap protein_coding retained_intron MGP_CASTEiJ_T0058521.1 MGP_CASTEiJ_G0025918.1 mouse_genomes_project 2 159280078 159298998 - Trpc4ap protein_coding processed_transcript MGP_CASTEiJ_T0013455.1 MGP_CASTEiJ_G0011618.1 mouse_genomes_project 2 182108216 182108968 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056806.1 MGP_CASTEiJ_G0025528.1 mouse_genomes_project 2 121471411 121481265 - Oip5 protein_coding retained_intron MGP_CASTEiJ_T0056807.1 MGP_CASTEiJ_G0025528.1 mouse_genomes_project 2 121471613 121481265 - MGP_CASTEiJ_P0056807 Oip5 protein_coding protein_coding MGP_CASTEiJ_T0053758.1 MGP_CASTEiJ_G0024773.1 mouse_genomes_project 2 28807329 28820996 - MGP_CASTEiJ_P0053758 Ptges protein_coding protein_coding MGP_CASTEiJ_T0053759.1 MGP_CASTEiJ_G0024773.1 mouse_genomes_project 2 28810116 28819496 - Ptges protein_coding processed_transcript MGP_CASTEiJ_T0053760.1 MGP_CASTEiJ_G0024773.1 mouse_genomes_project 2 28810130 28851186 - Ptges protein_coding processed_transcript MGP_CASTEiJ_T0053761.1 MGP_CASTEiJ_G0024773.1 mouse_genomes_project 2 28810322 28815189 - Ptges protein_coding processed_transcript MGP_CASTEiJ_T0057999.1 MGP_CASTEiJ_G0025775.1 mouse_genomes_project 2 149013808 149027902 + MGP_CASTEiJ_P0057999 Naa20 protein_coding protein_coding MGP_CASTEiJ_T0058000.1 MGP_CASTEiJ_G0025775.1 mouse_genomes_project 2 149013820 149027028 + MGP_CASTEiJ_P0058000 Naa20 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058001.1 MGP_CASTEiJ_G0025775.1 mouse_genomes_project 2 149013824 149027034 + MGP_CASTEiJ_P0058001 Naa20 protein_coding protein_coding MGP_CASTEiJ_T0058002.1 MGP_CASTEiJ_G0025775.1 mouse_genomes_project 2 149013829 149027108 + MGP_CASTEiJ_P0058002 Naa20 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058003.1 MGP_CASTEiJ_G0025775.1 mouse_genomes_project 2 149013861 149021866 + MGP_CASTEiJ_P0058003 Naa20 protein_coding protein_coding MGP_CASTEiJ_T0058004.1 MGP_CASTEiJ_G0025775.1 mouse_genomes_project 2 149013864 149023471 + Naa20 protein_coding retained_intron MGP_CASTEiJ_T0058005.1 MGP_CASTEiJ_G0025775.1 mouse_genomes_project 2 149013877 149027366 + MGP_CASTEiJ_P0058005 Naa20 protein_coding protein_coding MGP_CASTEiJ_T0058006.1 MGP_CASTEiJ_G0025775.1 mouse_genomes_project 2 149023361 149027211 + Naa20 protein_coding retained_intron MGP_CASTEiJ_T0010140.1 MGP_CASTEiJ_G0008328.1 mouse_genomes_project 2 75541971 75542045 + Gm24574 miRNA miRNA MGP_CASTEiJ_T0013446.1 MGP_CASTEiJ_G0011609.1 mouse_genomes_project 2 172899082 172899918 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058025.1 MGP_CASTEiJ_G0025778.1 mouse_genomes_project 2 149325138 149328216 + MGP_CASTEiJ_P0058025 Insm1 protein_coding protein_coding MGP_CASTEiJ_T0007215.1 MGP_CASTEiJ_G0005931.1 mouse_genomes_project 2 172197044 172202150 + Gm14321 lincRNA lincRNA MGP_CASTEiJ_T0007216.1 MGP_CASTEiJ_G0005931.1 mouse_genomes_project 2 172197113 172201707 + Gm14321 lincRNA lincRNA MGP_CASTEiJ_T0053445.1 MGP_CASTEiJ_G0024728.1 mouse_genomes_project 2 26434111 26557838 + MGP_CASTEiJ_P0053445 Ak8 protein_coding protein_coding MGP_CASTEiJ_T0053446.1 MGP_CASTEiJ_G0024728.1 mouse_genomes_project 2 26434154 26474548 + Ak8 protein_coding processed_transcript MGP_CASTEiJ_T0053447.1 MGP_CASTEiJ_G0024728.1 mouse_genomes_project 2 26482370 26500743 + Ak8 protein_coding processed_transcript MGP_CASTEiJ_T0010120.1 MGP_CASTEiJ_G0008308.1 mouse_genomes_project 2 30696011 30696097 + Mir1954 miRNA miRNA MGP_CASTEiJ_T0001035.1 MGP_CASTEiJ_G0000971.1 mouse_genomes_project 2 67254645 67259547 + TEC TEC MGP_CASTEiJ_T0013384.1 MGP_CASTEiJ_G0011547.1 mouse_genomes_project 2 150598633 150598942 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055285.1 MGP_CASTEiJ_G0025048.1 mouse_genomes_project 2 74551551 74568449 + Hoxd4 protein_coding processed_transcript MGP_CASTEiJ_T0055286.1 MGP_CASTEiJ_G0025048.1 mouse_genomes_project 2 74561540 74568727 + MGP_CASTEiJ_P0055286 Hoxd4 protein_coding protein_coding MGP_CASTEiJ_T0055288.1 MGP_CASTEiJ_G0025048.1 mouse_genomes_project 2 74566654 74568690 + MGP_CASTEiJ_P0055288 Hoxd4 protein_coding protein_coding MGP_CASTEiJ_T0053403.1 MGP_CASTEiJ_G0024720.1 mouse_genomes_project 2 26217443 26227957 + Gbgt1 protein_coding processed_transcript MGP_CASTEiJ_T0053404.1 MGP_CASTEiJ_G0024720.1 mouse_genomes_project 2 26217443 26230112 + MGP_CASTEiJ_P0053404 Gbgt1 protein_coding protein_coding MGP_CASTEiJ_T0053405.1 MGP_CASTEiJ_G0024720.1 mouse_genomes_project 2 26218297 26230112 + MGP_CASTEiJ_P0053405 Gbgt1 protein_coding protein_coding MGP_CASTEiJ_T0013166.1 MGP_CASTEiJ_G0011329.1 mouse_genomes_project 2 65376281 65376503 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100871.1 MGP_CASTEiJ_G0037784.1 mouse_genomes_project 2 41253963 41254096 + Gm24350 snoRNA snoRNA MGP_CASTEiJ_T0006969.1 MGP_CASTEiJ_G0005733.1 mouse_genomes_project 2 22656222 22680329 - Gm13387 lincRNA lincRNA MGP_CASTEiJ_T0006970.1 MGP_CASTEiJ_G0005733.1 mouse_genomes_project 2 22675333 22680329 - Gm13387 lincRNA lincRNA MGP_CASTEiJ_T0006971.1 MGP_CASTEiJ_G0005733.1 mouse_genomes_project 2 22678750 22680256 - Gm13387 lincRNA lincRNA MGP_CASTEiJ_T0013163.1 MGP_CASTEiJ_G0011326.1 mouse_genomes_project 2 63728487 63729265 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055550.1 MGP_CASTEiJ_G0025098.1 mouse_genomes_project 2 84995898 85002116 - MGP_CASTEiJ_P0055550 Clp1 protein_coding protein_coding MGP_CASTEiJ_T0055551.1 MGP_CASTEiJ_G0025098.1 mouse_genomes_project 2 84998001 85002224 - MGP_CASTEiJ_P0055551 Clp1 protein_coding protein_coding MGP_CASTEiJ_T0055552.1 MGP_CASTEiJ_G0025098.1 mouse_genomes_project 2 84998003 85002150 - Clp1 protein_coding processed_transcript MGP_CASTEiJ_T0013391.1 MGP_CASTEiJ_G0011554.1 mouse_genomes_project 2 153320961 153321967 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0054059.1 MGP_CASTEiJ_G0024815.1 mouse_genomes_project 2 30779780 30818520 + MGP_CASTEiJ_P0054059 Sh2d3c protein_coding protein_coding MGP_CASTEiJ_T0054060.1 MGP_CASTEiJ_G0024815.1 mouse_genomes_project 2 30789499 30806719 + Sh2d3c protein_coding processed_transcript MGP_CASTEiJ_T0054061.1 MGP_CASTEiJ_G0024815.1 mouse_genomes_project 2 30789499 30819038 + MGP_CASTEiJ_P0054061 Sh2d3c protein_coding protein_coding MGP_CASTEiJ_T0054064.1 MGP_CASTEiJ_G0024815.1 mouse_genomes_project 2 30797406 30803193 + Sh2d3c protein_coding processed_transcript MGP_CASTEiJ_T0054065.1 MGP_CASTEiJ_G0024815.1 mouse_genomes_project 2 30803361 30808939 + Sh2d3c protein_coding processed_transcript MGP_CASTEiJ_T0054066.1 MGP_CASTEiJ_G0024815.1 mouse_genomes_project 2 30803363 30805551 + Sh2d3c protein_coding processed_transcript MGP_CASTEiJ_T0054067.1 MGP_CASTEiJ_G0024815.1 mouse_genomes_project 2 30803431 30818528 + MGP_CASTEiJ_P0054067 Sh2d3c protein_coding unknown_likely_coding MGP_CASTEiJ_T0054068.1 MGP_CASTEiJ_G0024815.1 mouse_genomes_project 2 30803458 30818097 + MGP_CASTEiJ_P0054068 Sh2d3c protein_coding unknown_likely_coding MGP_CASTEiJ_T0058364.1 MGP_CASTEiJ_G0025881.1 mouse_genomes_project 2 157362815 157377746 + MGP_CASTEiJ_P0058364 Bpifb3 protein_coding protein_coding MGP_CASTEiJ_T0058365.1 MGP_CASTEiJ_G0025881.1 mouse_genomes_project 2 157362979 157377743 + MGP_CASTEiJ_P0058365 Bpifb3 protein_coding protein_coding MGP_CASTEiJ_T0004050.1 MGP_CASTEiJ_G0003588.1 mouse_genomes_project 2 177190787 177210765 + Gm14273 antisense antisense MGP_CASTEiJ_T0059038.1 MGP_CASTEiJ_G0026018.1 mouse_genomes_project 2 168330318 168331583 - MGP_CASTEiJ_P0059038 Wfdc15a protein_coding protein_coding MGP_CASTEiJ_T0059501.1 MGP_CASTEiJ_G0026130.1 mouse_genomes_project 2 178125183 178131163 + MGP_CASTEiJ_P0059501 Pck1 protein_coding protein_coding MGP_CASTEiJ_T0059502.1 MGP_CASTEiJ_G0026130.1 mouse_genomes_project 2 178125208 178126945 + Pck1 protein_coding processed_transcript MGP_CASTEiJ_T0059503.1 MGP_CASTEiJ_G0026130.1 mouse_genomes_project 2 178125208 178126595 + Pck1 protein_coding retained_intron MGP_CASTEiJ_T0059504.1 MGP_CASTEiJ_G0026130.1 mouse_genomes_project 2 178125217 178131161 + Pck1 protein_coding retained_intron MGP_CASTEiJ_T0011182.1 MGP_CASTEiJ_G0009370.1 mouse_genomes_project 2 128502680 128502972 - Gm24739 misc_RNA misc_RNA MGP_CASTEiJ_T0055839.1 MGP_CASTEiJ_G0025307.1 mouse_genomes_project 2 90850510 90851437 - MGP_CASTEiJ_P0055839 Olfr1264 protein_coding protein_coding MGP_CASTEiJ_T0055760.1 MGP_CASTEiJ_G0025249.1 mouse_genomes_project 2 89482847 89533132 - MGP_CASTEiJ_P0055760 protein_coding protein_coding MGP_CASTEiJ_T0013214.1 MGP_CASTEiJ_G0011377.1 mouse_genomes_project 2 83668005 83668489 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058422.1 MGP_CASTEiJ_G0025899.1 mouse_genomes_project 2 158111304 158133435 - MGP_CASTEiJ_P0058422 Pxmp4 protein_coding protein_coding MGP_CASTEiJ_T0058423.1 MGP_CASTEiJ_G0025899.1 mouse_genomes_project 2 158124264 158133415 - MGP_CASTEiJ_P0058423 Pxmp4 protein_coding protein_coding MGP_CASTEiJ_T0011160.1 MGP_CASTEiJ_G0009348.1 mouse_genomes_project 2 18735860 18736037 - Gm23007 misc_RNA misc_RNA MGP_CASTEiJ_T0013253.1 MGP_CASTEiJ_G0011416.1 mouse_genomes_project 2 95031454 95032602 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013191.1 MGP_CASTEiJ_G0011354.1 mouse_genomes_project 2 75516942 75517717 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013336.1 MGP_CASTEiJ_G0011499.1 mouse_genomes_project 2 131756552 131756653 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017035.1 MGP_CASTEiJ_G0014737.1 mouse_genomes_project 2 65663256 65680374 + Gm13630 processed_transcript processed_transcript MGP_CASTEiJ_T0058063.1 MGP_CASTEiJ_G0025789.1 mouse_genomes_project 2 151927194 151930659 + MGP_CASTEiJ_P0058063 Nxt1 protein_coding protein_coding MGP_CASTEiJ_T0058064.1 MGP_CASTEiJ_G0025789.1 mouse_genomes_project 2 151927219 151930659 + MGP_CASTEiJ_P0058064 Nxt1 protein_coding protein_coding MGP_CASTEiJ_T0007067.1 MGP_CASTEiJ_G0005811.1 mouse_genomes_project 2 83364393 83398116 - Gm28675 lincRNA lincRNA MGP_CASTEiJ_T0003783.1 MGP_CASTEiJ_G0003391.1 mouse_genomes_project 2 16891584 16894464 - Gm13344 antisense antisense MGP_CASTEiJ_T0055736.1 MGP_CASTEiJ_G0025227.1 mouse_genomes_project 2 88571728 88572694 + MGP_CASTEiJ_P0055736 Olfr1161 protein_coding protein_coding MGP_CASTEiJ_T0006992.1 MGP_CASTEiJ_G0005749.1 mouse_genomes_project 2 32128877 32130967 + Gm13404 lincRNA lincRNA MGP_CASTEiJ_T0058092.1 MGP_CASTEiJ_G0025803.1 mouse_genomes_project 2 153052566 153130573 + MGP_CASTEiJ_P0058092 Syndig1 protein_coding protein_coding MGP_CASTEiJ_T0058094.1 MGP_CASTEiJ_G0025803.1 mouse_genomes_project 2 153054142 153233494 + MGP_CASTEiJ_P0058094 Syndig1 protein_coding protein_coding MGP_CASTEiJ_T0058095.1 MGP_CASTEiJ_G0025803.1 mouse_genomes_project 2 153054223 153130614 + MGP_CASTEiJ_P0058095 Syndig1 protein_coding protein_coding MGP_CASTEiJ_T0058096.1 MGP_CASTEiJ_G0025803.1 mouse_genomes_project 2 153054255 153130610 + MGP_CASTEiJ_P0058096 Syndig1 protein_coding protein_coding MGP_CASTEiJ_T0058097.1 MGP_CASTEiJ_G0025803.1 mouse_genomes_project 2 153054276 153130740 + MGP_CASTEiJ_P0058097 Syndig1 protein_coding protein_coding MGP_CASTEiJ_T0058098.1 MGP_CASTEiJ_G0025803.1 mouse_genomes_project 2 153127012 153233494 + MGP_CASTEiJ_P0058098 Syndig1 protein_coding protein_coding MGP_CASTEiJ_T0010107.1 MGP_CASTEiJ_G0008295.1 mouse_genomes_project 2 25092048 25092130 - Mir7578 miRNA miRNA MGP_CASTEiJ_T0017071.1 MGP_CASTEiJ_G0014762.1 mouse_genomes_project 2 95520141 95525674 + 2810002D19Rik processed_transcript processed_transcript MGP_CASTEiJ_T0100895.1 MGP_CASTEiJ_G0037808.1 mouse_genomes_project 2 105851981 105852113 + Gm22439 snoRNA snoRNA MGP_CASTEiJ_T0010153.1 MGP_CASTEiJ_G0008341.1 mouse_genomes_project 2 95279087 95279182 - Gm23630 miRNA miRNA MGP_CASTEiJ_T0055802.1 MGP_CASTEiJ_G0025285.1 mouse_genomes_project 2 90304701 90306579 - MGP_CASTEiJ_P0055802 Olfr1242 protein_coding protein_coding MGP_CASTEiJ_T0055803.1 MGP_CASTEiJ_G0025285.1 mouse_genomes_project 2 90304797 90310446 - MGP_CASTEiJ_P0055803 Olfr1242 protein_coding protein_coding MGP_CASTEiJ_T0055805.1 MGP_CASTEiJ_G0025285.1 mouse_genomes_project 2 90306252 90309936 - Olfr1242 protein_coding processed_transcript MGP_CASTEiJ_T0054246.1 MGP_CASTEiJ_G0024843.1 mouse_genomes_project 2 33186599 33270602 - MGP_CASTEiJ_P0054246 Hc protein_coding protein_coding MGP_CASTEiJ_T0054247.1 MGP_CASTEiJ_G0024843.1 mouse_genomes_project 2 33186972 33225337 - MGP_CASTEiJ_P0054247 Hc protein_coding protein_coding MGP_CASTEiJ_T0054248.1 MGP_CASTEiJ_G0024843.1 mouse_genomes_project 2 33194466 33196563 - Hc protein_coding processed_transcript MGP_CASTEiJ_T0054249.1 MGP_CASTEiJ_G0024843.1 mouse_genomes_project 2 33194560 33204750 - Hc protein_coding retained_intron MGP_CASTEiJ_T0054250.1 MGP_CASTEiJ_G0024843.1 mouse_genomes_project 2 33198205 33211983 - Hc protein_coding processed_transcript MGP_CASTEiJ_T0006960.1 MGP_CASTEiJ_G0005727.1 mouse_genomes_project 2 16270691 16273269 - Carlr lincRNA lincRNA MGP_CASTEiJ_T0100911.1 MGP_CASTEiJ_G0037824.1 mouse_genomes_project 2 145794378 145794494 + Gm22310 snoRNA snoRNA MGP_CASTEiJ_T0017060.1 MGP_CASTEiJ_G0014756.1 mouse_genomes_project 2 91903601 91912899 - Gm13778 processed_transcript processed_transcript MGP_CASTEiJ_T0017061.1 MGP_CASTEiJ_G0014756.1 mouse_genomes_project 2 91903903 91912914 - Gm13778 processed_transcript processed_transcript MGP_CASTEiJ_T0055637.1 MGP_CASTEiJ_G0025139.1 mouse_genomes_project 2 86332017 86332941 + MGP_CASTEiJ_P0055637 Olfr1026 protein_coding protein_coding MGP_CASTEiJ_T0055640.1 MGP_CASTEiJ_G0025142.1 mouse_genomes_project 2 86395776 86396787 + MGP_CASTEiJ_P0055640 Olfr1031 protein_coding protein_coding MGP_CASTEiJ_T0056570.1 MGP_CASTEiJ_G0025469.1 mouse_genomes_project 2 113780177 113861363 + MGP_CASTEiJ_P0056570 protein_coding protein_coding MGP_CASTEiJ_T0056571.1 MGP_CASTEiJ_G0025469.1 mouse_genomes_project 2 113788865 113864015 + MGP_CASTEiJ_P0056571 protein_coding protein_coding MGP_CASTEiJ_T0056573.1 MGP_CASTEiJ_G0025469.1 mouse_genomes_project 2 113832650 113856864 + MGP_CASTEiJ_P0056573 protein_coding protein_coding MGP_CASTEiJ_T0056574.1 MGP_CASTEiJ_G0025469.1 mouse_genomes_project 2 113846288 113852465 + protein_coding processed_transcript MGP_CASTEiJ_T0056575.1 MGP_CASTEiJ_G0025469.1 mouse_genomes_project 2 113853358 113855073 + protein_coding processed_transcript MGP_CASTEiJ_T0056576.1 MGP_CASTEiJ_G0025469.1 mouse_genomes_project 2 113855036 113857722 + protein_coding processed_transcript MGP_CASTEiJ_T0056577.1 MGP_CASTEiJ_G0025469.1 mouse_genomes_project 2 113857029 113864022 + protein_coding retained_intron MGP_CASTEiJ_T0052739.1 MGP_CASTEiJ_G0024597.1 mouse_genomes_project 2 20953880 21024118 - MGP_CASTEiJ_P0052739 Spopl protein_coding protein_coding MGP_CASTEiJ_T0052740.1 MGP_CASTEiJ_G0024597.1 mouse_genomes_project 2 20960683 21024092 - MGP_CASTEiJ_P0052740 Spopl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052741.1 MGP_CASTEiJ_G0024597.1 mouse_genomes_project 2 20961279 21023992 - MGP_CASTEiJ_P0052741 Spopl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052742.1 MGP_CASTEiJ_G0024597.1 mouse_genomes_project 2 20961541 20965240 - Spopl protein_coding retained_intron MGP_CASTEiJ_T0052743.1 MGP_CASTEiJ_G0024597.1 mouse_genomes_project 2 20967804 20984227 - Spopl protein_coding retained_intron MGP_CASTEiJ_T0052744.1 MGP_CASTEiJ_G0024597.1 mouse_genomes_project 2 20991094 21024120 - MGP_CASTEiJ_P0052744 Spopl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098864.1 MGP_CASTEiJ_G0035789.1 mouse_genomes_project 2 4058179 4060726 - Gm10855 sense_intronic sense_intronic MGP_CASTEiJ_T0058246.1 MGP_CASTEiJ_G0025853.1 mouse_genomes_project 2 156003019 156042278 + MGP_CASTEiJ_P0058246 H13 protein_coding protein_coding MGP_CASTEiJ_T0058247.1 MGP_CASTEiJ_G0025853.1 mouse_genomes_project 2 156003044 156017039 + H13 protein_coding retained_intron MGP_CASTEiJ_T0058248.1 MGP_CASTEiJ_G0025853.1 mouse_genomes_project 2 156003046 156020302 + MGP_CASTEiJ_P0058248 H13 protein_coding protein_coding MGP_CASTEiJ_T0058249.1 MGP_CASTEiJ_G0025853.1 mouse_genomes_project 2 156003046 156038668 + MGP_CASTEiJ_P0058249 H13 protein_coding protein_coding MGP_CASTEiJ_T0058250.1 MGP_CASTEiJ_G0025853.1 mouse_genomes_project 2 156003092 156037760 + MGP_CASTEiJ_P0058250 H13 protein_coding protein_coding MGP_CASTEiJ_T0058252.1 MGP_CASTEiJ_G0025853.1 mouse_genomes_project 2 156025464 156029857 + H13 protein_coding retained_intron MGP_CASTEiJ_T0059266.1 MGP_CASTEiJ_G0026076.1 mouse_genomes_project 2 170257435 170340651 + MGP_CASTEiJ_P0059266 Ncoa3 protein_coding protein_coding MGP_CASTEiJ_T0059267.1 MGP_CASTEiJ_G0026076.1 mouse_genomes_project 2 170257436 170342408 + MGP_CASTEiJ_P0059267 Ncoa3 protein_coding protein_coding MGP_CASTEiJ_T0059269.1 MGP_CASTEiJ_G0026076.1 mouse_genomes_project 2 170315044 170319496 + Ncoa3 protein_coding processed_transcript MGP_CASTEiJ_T0059270.1 MGP_CASTEiJ_G0026076.1 mouse_genomes_project 2 170330035 170335384 + Ncoa3 protein_coding retained_intron MGP_CASTEiJ_T0059271.1 MGP_CASTEiJ_G0026076.1 mouse_genomes_project 2 170336641 170339382 + Ncoa3 protein_coding retained_intron MGP_CASTEiJ_T0059013.1 MGP_CASTEiJ_G0026008.1 mouse_genomes_project 2 167914302 167923627 + Wisp2 protein_coding processed_transcript MGP_CASTEiJ_T0059014.1 MGP_CASTEiJ_G0026008.1 mouse_genomes_project 2 167914330 167927815 + MGP_CASTEiJ_P0059014 Wisp2 protein_coding protein_coding MGP_CASTEiJ_T0053933.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30330604 30381108 - MGP_CASTEiJ_P0053933 Dnm1 protein_coding protein_coding MGP_CASTEiJ_T0053934.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30330604 30381102 - MGP_CASTEiJ_P0053934 Dnm1 protein_coding protein_coding MGP_CASTEiJ_T0053935.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30330604 30381101 - MGP_CASTEiJ_P0053935 Dnm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053936.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30330604 30381081 - MGP_CASTEiJ_P0053936 Dnm1 protein_coding protein_coding MGP_CASTEiJ_T0053937.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30330604 30381120 - MGP_CASTEiJ_P0053937 Dnm1 protein_coding protein_coding MGP_CASTEiJ_T0053938.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30330604 30381156 - MGP_CASTEiJ_P0053938 Dnm1 protein_coding protein_coding MGP_CASTEiJ_T0053939.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30330605 30381111 - MGP_CASTEiJ_P0053939 Dnm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0053940.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30330611 30381052 - MGP_CASTEiJ_P0053940 Dnm1 protein_coding protein_coding MGP_CASTEiJ_T0053941.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30330630 30342693 - MGP_CASTEiJ_P0053941 Dnm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053942.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30330974 30381088 - MGP_CASTEiJ_P0053942 Dnm1 protein_coding protein_coding MGP_CASTEiJ_T0053943.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30331057 30332769 - Dnm1 protein_coding retained_intron MGP_CASTEiJ_T0053944.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30331608 30335056 - MGP_CASTEiJ_P0053944 Dnm1 protein_coding protein_coding MGP_CASTEiJ_T0053945.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30331612 30381120 - MGP_CASTEiJ_P0053945 Dnm1 protein_coding protein_coding MGP_CASTEiJ_T0053946.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30331983 30335026 - MGP_CASTEiJ_P0053946 Dnm1 protein_coding protein_coding MGP_CASTEiJ_T0053947.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30332396 30335022 - MGP_CASTEiJ_P0053947 Dnm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0053948.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30334359 30339435 - Dnm1 protein_coding processed_transcript MGP_CASTEiJ_T0053949.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30334374 30335210 - Dnm1 protein_coding retained_intron MGP_CASTEiJ_T0053950.1 MGP_CASTEiJ_G0024798.1 mouse_genomes_project 2 30363203 30381069 - MGP_CASTEiJ_P0053950 Dnm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0017166.1 MGP_CASTEiJ_G0014804.1 mouse_genomes_project 2 170105481 170106862 + BC046401 processed_transcript processed_transcript MGP_CASTEiJ_T0013309.1 MGP_CASTEiJ_G0011472.1 mouse_genomes_project 2 114934897 114935422 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007124.1 MGP_CASTEiJ_G0005856.1 mouse_genomes_project 2 119598557 119678013 + 4930412B13Rik lincRNA lincRNA MGP_CASTEiJ_T0054797.1 MGP_CASTEiJ_G0024956.1 mouse_genomes_project 2 59251098 59284815 - MGP_CASTEiJ_P0054797 Cd302 protein_coding protein_coding MGP_CASTEiJ_T0054798.1 MGP_CASTEiJ_G0024956.1 mouse_genomes_project 2 59251098 59284745 - MGP_CASTEiJ_P0054798 Cd302 protein_coding protein_coding MGP_CASTEiJ_T0059386.1 MGP_CASTEiJ_G0026099.1 mouse_genomes_project 2 172640248 172690384 - MGP_CASTEiJ_P0059386 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0010080.1 MGP_CASTEiJ_G0008268.1 mouse_genomes_project 2 7751446 7751544 + Mir669m-2 miRNA miRNA MGP_CASTEiJ_T0052285.1 MGP_CASTEiJ_G0024524.1 mouse_genomes_project 2 3039691 3150337 + MGP_CASTEiJ_P0052285 Upf2 protein_coding protein_coding MGP_CASTEiJ_T0052286.1 MGP_CASTEiJ_G0024524.1 mouse_genomes_project 2 3040185 3150339 + MGP_CASTEiJ_P0052286 Upf2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052287.1 MGP_CASTEiJ_G0024524.1 mouse_genomes_project 2 3114644 3150332 + MGP_CASTEiJ_P0052287 Upf2 protein_coding protein_coding MGP_CASTEiJ_T0052288.1 MGP_CASTEiJ_G0024524.1 mouse_genomes_project 2 3144039 3149136 + Upf2 protein_coding processed_transcript MGP_CASTEiJ_T0059354.1 MGP_CASTEiJ_G0026089.1 mouse_genomes_project 2 171873504 171885882 - MGP_CASTEiJ_P0059354 protein_coding protein_coding MGP_CASTEiJ_T0059355.1 MGP_CASTEiJ_G0026089.1 mouse_genomes_project 2 171877620 171878922 - protein_coding retained_intron MGP_CASTEiJ_T0059356.1 MGP_CASTEiJ_G0026089.1 mouse_genomes_project 2 171878446 171885909 - protein_coding processed_transcript MGP_CASTEiJ_T0059357.1 MGP_CASTEiJ_G0026089.1 mouse_genomes_project 2 171878497 171885882 - protein_coding processed_transcript MGP_CASTEiJ_T0059358.1 MGP_CASTEiJ_G0026089.1 mouse_genomes_project 2 171878604 171885915 - protein_coding processed_transcript MGP_CASTEiJ_T0056362.1 MGP_CASTEiJ_G0025395.1 mouse_genomes_project 2 105170841 105227904 - 4931422A03Rik protein_coding processed_transcript MGP_CASTEiJ_T0056369.1 MGP_CASTEiJ_G0025395.1 mouse_genomes_project 2 105197300 105228413 - MGP_CASTEiJ_P0056369 4931422A03Rik protein_coding protein_coding MGP_CASTEiJ_T0056370.1 MGP_CASTEiJ_G0025395.1 mouse_genomes_project 2 105226031 105228466 - 4931422A03Rik protein_coding retained_intron MGP_CASTEiJ_T0007035.1 MGP_CASTEiJ_G0005786.1 mouse_genomes_project 2 71394507 71396579 - Gm17250 lincRNA lincRNA MGP_CASTEiJ_T0007106.1 MGP_CASTEiJ_G0005843.1 mouse_genomes_project 2 116448542 116662427 + lincRNA lincRNA MGP_CASTEiJ_T0058860.1 MGP_CASTEiJ_G0025974.1 mouse_genomes_project 2 162334953 162341263 + MGP_CASTEiJ_P0058860 Adig protein_coding protein_coding MGP_CASTEiJ_T0058861.1 MGP_CASTEiJ_G0025974.1 mouse_genomes_project 2 162334994 162341263 + MGP_CASTEiJ_P0058861 Adig protein_coding protein_coding MGP_CASTEiJ_T0058862.1 MGP_CASTEiJ_G0025974.1 mouse_genomes_project 2 162335080 162338233 + Adig protein_coding processed_transcript MGP_CASTEiJ_T0054627.1 MGP_CASTEiJ_G0024928.1 mouse_genomes_project 2 50896596 50916597 + MGP_CASTEiJ_P0054627 Tnfaip6 protein_coding protein_coding MGP_CASTEiJ_T0057593.1 MGP_CASTEiJ_G0025690.1 mouse_genomes_project 2 133026038 133070036 - MGP_CASTEiJ_P0057593 Ubox5 protein_coding protein_coding MGP_CASTEiJ_T0057594.1 MGP_CASTEiJ_G0025690.1 mouse_genomes_project 2 133036633 133070025 - MGP_CASTEiJ_P0057594 Ubox5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098870.1 MGP_CASTEiJ_G0035795.1 mouse_genomes_project 2 138376159 138377132 + Gm14209 sense_intronic sense_intronic MGP_CASTEiJ_T0058081.1 MGP_CASTEiJ_G0025797.1 mouse_genomes_project 2 152083523 152095490 + MGP_CASTEiJ_P0058081 Cst13 protein_coding protein_coding MGP_CASTEiJ_T0055622.1 MGP_CASTEiJ_G0025125.1 mouse_genomes_project 2 86060277 86061219 + MGP_CASTEiJ_P0055622 Olfr1008 protein_coding protein_coding MGP_CASTEiJ_T0003950.1 MGP_CASTEiJ_G0003513.1 mouse_genomes_project 2 131107153 131109588 - Gm14011 antisense antisense MGP_CASTEiJ_T0057452.1 MGP_CASTEiJ_G0025653.1 mouse_genomes_project 2 130932127 130934720 + MGP_CASTEiJ_P0057452 protein_coding protein_coding MGP_CASTEiJ_T0057453.1 MGP_CASTEiJ_G0025653.1 mouse_genomes_project 2 130932190 130939230 + MGP_CASTEiJ_P0057453 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057454.1 MGP_CASTEiJ_G0025653.1 mouse_genomes_project 2 130935040 130937699 + MGP_CASTEiJ_P0057454 protein_coding protein_coding MGP_CASTEiJ_T0052821.1 MGP_CASTEiJ_G0024611.1 mouse_genomes_project 2 22471082 22484361 + MGP_CASTEiJ_P0052821 Zmynd19 protein_coding protein_coding MGP_CASTEiJ_T0058102.1 MGP_CASTEiJ_G0025807.1 mouse_genomes_project 2 153787836 153813005 - MGP_CASTEiJ_P0058102 Apmap protein_coding protein_coding MGP_CASTEiJ_T0058103.1 MGP_CASTEiJ_G0025807.1 mouse_genomes_project 2 153791869 153804687 - Apmap protein_coding processed_transcript MGP_CASTEiJ_T0058104.1 MGP_CASTEiJ_G0025807.1 mouse_genomes_project 2 153799106 153812982 - Apmap protein_coding processed_transcript MGP_CASTEiJ_T0052784.1 MGP_CASTEiJ_G0024608.1 mouse_genomes_project 2 22084969 22259787 - MGP_CASTEiJ_P0052784 Cacna1b protein_coding protein_coding MGP_CASTEiJ_T0052785.1 MGP_CASTEiJ_G0024608.1 mouse_genomes_project 2 22084976 22259764 - MGP_CASTEiJ_P0052785 Cacna1b protein_coding protein_coding MGP_CASTEiJ_T0052786.1 MGP_CASTEiJ_G0024608.1 mouse_genomes_project 2 22087444 22259682 - MGP_CASTEiJ_P0052786 Cacna1b protein_coding protein_coding MGP_CASTEiJ_T0052787.1 MGP_CASTEiJ_G0024608.1 mouse_genomes_project 2 22087448 22088604 - MGP_CASTEiJ_P0052787 Cacna1b protein_coding protein_coding MGP_CASTEiJ_T0052788.1 MGP_CASTEiJ_G0024608.1 mouse_genomes_project 2 22087639 22259682 - MGP_CASTEiJ_P0052788 Cacna1b protein_coding protein_coding MGP_CASTEiJ_T0052789.1 MGP_CASTEiJ_G0024608.1 mouse_genomes_project 2 22087639 22259682 - MGP_CASTEiJ_P0052789 Cacna1b protein_coding protein_coding MGP_CASTEiJ_T0052790.1 MGP_CASTEiJ_G0024608.1 mouse_genomes_project 2 22089060 22101403 - MGP_CASTEiJ_P0052790 Cacna1b protein_coding protein_coding MGP_CASTEiJ_T0052791.1 MGP_CASTEiJ_G0024608.1 mouse_genomes_project 2 22091000 22123365 - MGP_CASTEiJ_P0052791 Cacna1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052792.1 MGP_CASTEiJ_G0024608.1 mouse_genomes_project 2 22106711 22115964 - MGP_CASTEiJ_P0052792 Cacna1b protein_coding protein_coding MGP_CASTEiJ_T0052793.1 MGP_CASTEiJ_G0024608.1 mouse_genomes_project 2 22171469 22177843 - MGP_CASTEiJ_P0052793 Cacna1b protein_coding protein_coding MGP_CASTEiJ_T0013126.1 MGP_CASTEiJ_G0011289.1 mouse_genomes_project 2 49437026 49437438 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001024.1 MGP_CASTEiJ_G0000960.1 mouse_genomes_project 2 34325418 34328589 - TEC TEC MGP_CASTEiJ_T0013279.1 MGP_CASTEiJ_G0011442.1 mouse_genomes_project 2 105087863 105088124 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007169.1 MGP_CASTEiJ_G0005893.1 mouse_genomes_project 2 153950245 153953861 - Gm26681 lincRNA lincRNA MGP_CASTEiJ_T0013183.1 MGP_CASTEiJ_G0011346.1 mouse_genomes_project 2 72320104 72321265 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055496.1 MGP_CASTEiJ_G0025088.1 mouse_genomes_project 2 84157283 84180934 - MGP_CASTEiJ_P0055496 Zswim2 protein_coding protein_coding MGP_CASTEiJ_T0055497.1 MGP_CASTEiJ_G0025088.1 mouse_genomes_project 2 84158973 84180936 - MGP_CASTEiJ_P0055497 Zswim2 protein_coding protein_coding MGP_CASTEiJ_T0055498.1 MGP_CASTEiJ_G0025088.1 mouse_genomes_project 2 84166323 84167788 - Zswim2 protein_coding processed_transcript MGP_CASTEiJ_T0056393.1 MGP_CASTEiJ_G0025403.1 mouse_genomes_project 2 105864126 105945764 + MGP_CASTEiJ_P0056393 Cstf3 protein_coding protein_coding MGP_CASTEiJ_T0056394.1 MGP_CASTEiJ_G0025403.1 mouse_genomes_project 2 105864134 105886354 + Cstf3 protein_coding retained_intron MGP_CASTEiJ_T0056395.1 MGP_CASTEiJ_G0025403.1 mouse_genomes_project 2 105864215 105884381 + Cstf3 protein_coding retained_intron MGP_CASTEiJ_T0056396.1 MGP_CASTEiJ_G0025403.1 mouse_genomes_project 2 105899914 105945254 + MGP_CASTEiJ_P0056396 Cstf3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056397.1 MGP_CASTEiJ_G0025403.1 mouse_genomes_project 2 105935851 105943776 + Cstf3 protein_coding processed_transcript MGP_CASTEiJ_T0056399.1 MGP_CASTEiJ_G0025403.1 mouse_genomes_project 2 105943473 105944515 + Cstf3 protein_coding processed_transcript MGP_CASTEiJ_T0056400.1 MGP_CASTEiJ_G0025403.1 mouse_genomes_project 2 105944003 105945074 + Cstf3 protein_coding processed_transcript MGP_CASTEiJ_T0099662.1 MGP_CASTEiJ_G0036575.1 mouse_genomes_project 2 135952634 135952691 + Gm27449 snRNA snRNA MGP_CASTEiJ_T0056672.1 MGP_CASTEiJ_G0025494.1 mouse_genomes_project 2 119984616 120039686 - MGP_CASTEiJ_P0056672 Fsip1 protein_coding protein_coding MGP_CASTEiJ_T0056673.1 MGP_CASTEiJ_G0025494.1 mouse_genomes_project 2 120027330 120039676 - MGP_CASTEiJ_P0056673 Fsip1 protein_coding protein_coding MGP_CASTEiJ_T0056892.1 MGP_CASTEiJ_G0025545.1 mouse_genomes_project 2 122198696 122211125 - Pla2g4f protein_coding retained_intron MGP_CASTEiJ_T0056893.1 MGP_CASTEiJ_G0025545.1 mouse_genomes_project 2 122198705 122212896 - MGP_CASTEiJ_P0056893 Pla2g4f protein_coding protein_coding MGP_CASTEiJ_T0013316.1 MGP_CASTEiJ_G0011479.1 mouse_genomes_project 2 121009508 121013619 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013097.1 MGP_CASTEiJ_G0011260.1 mouse_genomes_project 2 37234824 37235411 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052897.1 MGP_CASTEiJ_G0024624.1 mouse_genomes_project 2 22760896 22766369 - MGP_CASTEiJ_P0052897 Slc34a3 protein_coding protein_coding MGP_CASTEiJ_T0052898.1 MGP_CASTEiJ_G0024624.1 mouse_genomes_project 2 22762780 22765030 - Slc34a3 protein_coding processed_transcript MGP_CASTEiJ_T0052899.1 MGP_CASTEiJ_G0024624.1 mouse_genomes_project 2 22763962 22766223 - Slc34a3 protein_coding processed_transcript MGP_CASTEiJ_T0052900.1 MGP_CASTEiJ_G0024624.1 mouse_genomes_project 2 22764003 22766216 - Slc34a3 protein_coding processed_transcript MGP_CASTEiJ_T0052901.1 MGP_CASTEiJ_G0024624.1 mouse_genomes_project 2 22764008 22765703 - Slc34a3 protein_coding processed_transcript MGP_CASTEiJ_T0052902.1 MGP_CASTEiJ_G0024624.1 mouse_genomes_project 2 22764281 22766239 - Slc34a3 protein_coding processed_transcript MGP_CASTEiJ_T0052903.1 MGP_CASTEiJ_G0024624.1 mouse_genomes_project 2 22764418 22766193 - Slc34a3 protein_coding processed_transcript MGP_CASTEiJ_T0013416.1 MGP_CASTEiJ_G0011579.1 mouse_genomes_project 2 160039357 160039834 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013042.1 MGP_CASTEiJ_G0011205.1 mouse_genomes_project 2 15610063 15610514 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013045.1 MGP_CASTEiJ_G0011208.1 mouse_genomes_project 2 16011565 16011638 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052940.1 MGP_CASTEiJ_G0024635.1 mouse_genomes_project 2 22823848 22825114 + MGP_CASTEiJ_P0052940 Lrrc26 protein_coding protein_coding MGP_CASTEiJ_T0017027.1 MGP_CASTEiJ_G0014732.1 mouse_genomes_project 2 51299802 51306669 + A430018G15Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017028.1 MGP_CASTEiJ_G0014732.1 mouse_genomes_project 2 51299802 51309674 + A430018G15Rik processed_transcript processed_transcript MGP_CASTEiJ_T0007009.1 MGP_CASTEiJ_G0005762.1 mouse_genomes_project 2 45035947 45063296 - Gm13470 lincRNA lincRNA MGP_CASTEiJ_T0059125.1 MGP_CASTEiJ_G0026052.1 mouse_genomes_project 2 168997562 169001749 + MGP_CASTEiJ_P0059125 Zswim1 protein_coding protein_coding MGP_CASTEiJ_T0059126.1 MGP_CASTEiJ_G0026052.1 mouse_genomes_project 2 168997889 169000146 + MGP_CASTEiJ_P0059126 Zswim1 protein_coding protein_coding MGP_CASTEiJ_T0057455.1 MGP_CASTEiJ_G0025654.1 mouse_genomes_project 2 130953524 131038247 - MGP_CASTEiJ_P0057455 Anapc1 protein_coding protein_coding MGP_CASTEiJ_T0057456.1 MGP_CASTEiJ_G0025654.1 mouse_genomes_project 2 130958826 130961564 - Anapc1 protein_coding processed_transcript MGP_CASTEiJ_T0057457.1 MGP_CASTEiJ_G0025654.1 mouse_genomes_project 2 130960994 130966270 - Anapc1 protein_coding processed_transcript MGP_CASTEiJ_T0057458.1 MGP_CASTEiJ_G0025654.1 mouse_genomes_project 2 130965799 130971693 - Anapc1 protein_coding processed_transcript MGP_CASTEiJ_T0057459.1 MGP_CASTEiJ_G0025654.1 mouse_genomes_project 2 130967957 130972886 - Anapc1 protein_coding processed_transcript MGP_CASTEiJ_T0057460.1 MGP_CASTEiJ_G0025654.1 mouse_genomes_project 2 130972789 130974285 - Anapc1 protein_coding processed_transcript MGP_CASTEiJ_T0057461.1 MGP_CASTEiJ_G0025654.1 mouse_genomes_project 2 130988921 131038232 - MGP_CASTEiJ_P0057461 Anapc1 protein_coding protein_coding MGP_CASTEiJ_T0057462.1 MGP_CASTEiJ_G0025654.1 mouse_genomes_project 2 131007272 131012657 - Anapc1 protein_coding processed_transcript MGP_CASTEiJ_T0057463.1 MGP_CASTEiJ_G0025654.1 mouse_genomes_project 2 131009078 131013499 - Anapc1 protein_coding processed_transcript MGP_CASTEiJ_T0057464.1 MGP_CASTEiJ_G0025654.1 mouse_genomes_project 2 131028341 131038231 - Anapc1 protein_coding processed_transcript MGP_CASTEiJ_T0057465.1 MGP_CASTEiJ_G0025654.1 mouse_genomes_project 2 131035790 131038210 - MGP_CASTEiJ_P0057465 Anapc1 protein_coding protein_coding MGP_CASTEiJ_T0100849.1 MGP_CASTEiJ_G0037762.1 mouse_genomes_project 2 7302684 7302812 - Gm23608 snoRNA snoRNA MGP_CASTEiJ_T0054003.1 MGP_CASTEiJ_G0024806.1 mouse_genomes_project 2 30612107 30614817 + MGP_CASTEiJ_P0054003 Dpm2 protein_coding protein_coding MGP_CASTEiJ_T0054004.1 MGP_CASTEiJ_G0024806.1 mouse_genomes_project 2 30612107 30614801 + MGP_CASTEiJ_P0054004 Dpm2 protein_coding protein_coding MGP_CASTEiJ_T0054005.1 MGP_CASTEiJ_G0024806.1 mouse_genomes_project 2 30612116 30614319 + Dpm2 protein_coding retained_intron MGP_CASTEiJ_T0054006.1 MGP_CASTEiJ_G0024806.1 mouse_genomes_project 2 30613284 30614694 + Dpm2 protein_coding retained_intron MGP_CASTEiJ_T0054378.1 MGP_CASTEiJ_G0024888.1 mouse_genomes_project 2 35540525 35549774 - MGP_CASTEiJ_P0054378 Pdcl protein_coding protein_coding MGP_CASTEiJ_T0054379.1 MGP_CASTEiJ_G0024888.1 mouse_genomes_project 2 35541037 35549695 - MGP_CASTEiJ_P0054379 Pdcl protein_coding protein_coding MGP_CASTEiJ_T0054380.1 MGP_CASTEiJ_G0024888.1 mouse_genomes_project 2 35542569 35549631 - MGP_CASTEiJ_P0054380 Pdcl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054381.1 MGP_CASTEiJ_G0024888.1 mouse_genomes_project 2 35542608 35549638 - MGP_CASTEiJ_P0054381 Pdcl protein_coding protein_coding MGP_CASTEiJ_T0013263.1 MGP_CASTEiJ_G0011426.1 mouse_genomes_project 2 100714564 100715192 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013313.1 MGP_CASTEiJ_G0011476.1 mouse_genomes_project 2 118971486 118972047 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053104.1 MGP_CASTEiJ_G0024662.1 mouse_genomes_project 2 23238550 23241887 + MGP_CASTEiJ_P0053104 Lcn10 protein_coding protein_coding MGP_CASTEiJ_T0059100.1 MGP_CASTEiJ_G0026044.1 mouse_genomes_project 2 168883837 168886514 + MGP_CASTEiJ_P0059100 Spint5 protein_coding protein_coding MGP_CASTEiJ_T0059101.1 MGP_CASTEiJ_G0026044.1 mouse_genomes_project 2 168883837 168886514 + MGP_CASTEiJ_P0059101 Spint5 protein_coding protein_coding MGP_CASTEiJ_T0003961.1 MGP_CASTEiJ_G0003519.1 mouse_genomes_project 2 133656666 133668059 + Gm14232 antisense antisense MGP_CASTEiJ_T0057920.1 MGP_CASTEiJ_G0025757.1 mouse_genomes_project 2 146831850 146870953 - MGP_CASTEiJ_P0057920 Bfsp1 protein_coding protein_coding MGP_CASTEiJ_T0057921.1 MGP_CASTEiJ_G0025757.1 mouse_genomes_project 2 146831850 146871183 - MGP_CASTEiJ_P0057921 Bfsp1 protein_coding protein_coding MGP_CASTEiJ_T0055764.1 MGP_CASTEiJ_G0025253.1 mouse_genomes_project 2 89560754 89564597 + MGP_CASTEiJ_P0055764 Olfr1201 protein_coding protein_coding MGP_CASTEiJ_T0013145.1 MGP_CASTEiJ_G0011308.1 mouse_genomes_project 2 56188535 56192229 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057428.1 MGP_CASTEiJ_G0025646.1 mouse_genomes_project 2 129994007 130025566 - MGP_CASTEiJ_P0057428 Mall protein_coding protein_coding MGP_CASTEiJ_T0004038.1 MGP_CASTEiJ_G0003576.1 mouse_genomes_project 2 169360824 169365382 + Gm14397 antisense antisense MGP_CASTEiJ_T0013159.1 MGP_CASTEiJ_G0011322.1 mouse_genomes_project 2 60068226 60068846 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059774.1 MGP_CASTEiJ_G0026193.1 mouse_genomes_project 2 184172191 184180241 - MGP_CASTEiJ_P0059774 Stmn3 protein_coding protein_coding MGP_CASTEiJ_T0102246.1 MGP_CASTEiJ_G0038971.1 mouse_genomes_project 2 91224188 91225118 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0059614.1 MGP_CASTEiJ_G0026160.1 mouse_genomes_project 2 182857480 182873526 + protein_coding retained_intron MGP_CASTEiJ_T0059615.1 MGP_CASTEiJ_G0026160.1 mouse_genomes_project 2 182857484 182868233 + protein_coding retained_intron MGP_CASTEiJ_T0059616.1 MGP_CASTEiJ_G0026160.1 mouse_genomes_project 2 182857484 182873533 + MGP_CASTEiJ_P0059616 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059617.1 MGP_CASTEiJ_G0026160.1 mouse_genomes_project 2 182857526 182873555 + MGP_CASTEiJ_P0059617 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059618.1 MGP_CASTEiJ_G0026160.1 mouse_genomes_project 2 182866424 182870571 + protein_coding retained_intron MGP_CASTEiJ_T0059619.1 MGP_CASTEiJ_G0026160.1 mouse_genomes_project 2 182870658 182873531 + protein_coding retained_intron MGP_CASTEiJ_T0007014.1 MGP_CASTEiJ_G0005767.1 mouse_genomes_project 2 50033908 50091452 + Gm13497 lincRNA lincRNA MGP_CASTEiJ_T0059863.1 MGP_CASTEiJ_G0026204.1 mouse_genomes_project 2 184468266 184478962 - MGP_CASTEiJ_P0059863 Zfp512b protein_coding protein_coding MGP_CASTEiJ_T0059864.1 MGP_CASTEiJ_G0026204.1 mouse_genomes_project 2 184468268 184477084 - MGP_CASTEiJ_P0059864 Zfp512b protein_coding protein_coding MGP_CASTEiJ_T0059865.1 MGP_CASTEiJ_G0026204.1 mouse_genomes_project 2 184470763 184472577 - Zfp512b protein_coding retained_intron MGP_CASTEiJ_T0059866.1 MGP_CASTEiJ_G0026204.1 mouse_genomes_project 2 184471351 184472483 - MGP_CASTEiJ_P0059866 Zfp512b protein_coding protein_coding MGP_CASTEiJ_T0059867.1 MGP_CASTEiJ_G0026204.1 mouse_genomes_project 2 184471357 184472535 - MGP_CASTEiJ_P0059867 Zfp512b protein_coding protein_coding MGP_CASTEiJ_T0059868.1 MGP_CASTEiJ_G0026204.1 mouse_genomes_project 2 184472894 184473804 - Zfp512b protein_coding retained_intron MGP_CASTEiJ_T0059869.1 MGP_CASTEiJ_G0026204.1 mouse_genomes_project 2 184473290 184474904 - MGP_CASTEiJ_P0059869 Zfp512b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059870.1 MGP_CASTEiJ_G0026204.1 mouse_genomes_project 2 184474230 184475451 - Zfp512b protein_coding processed_transcript MGP_CASTEiJ_T0059871.1 MGP_CASTEiJ_G0026204.1 mouse_genomes_project 2 184476187 184478917 - Zfp512b protein_coding processed_transcript MGP_CASTEiJ_T0059872.1 MGP_CASTEiJ_G0026204.1 mouse_genomes_project 2 184476686 184478962 - MGP_CASTEiJ_P0059872 Zfp512b protein_coding protein_coding MGP_CASTEiJ_T0057502.1 MGP_CASTEiJ_G0025666.1 mouse_genomes_project 2 131655780 131683986 - MGP_CASTEiJ_P0057502 Ckap2l protein_coding protein_coding MGP_CASTEiJ_T0059727.1 MGP_CASTEiJ_G0026184.1 mouse_genomes_project 2 183869284 183890012 - MGP_CASTEiJ_P0059727 Chrna4 protein_coding protein_coding MGP_CASTEiJ_T0059728.1 MGP_CASTEiJ_G0026184.1 mouse_genomes_project 2 183869285 183879266 - MGP_CASTEiJ_P0059728 Chrna4 protein_coding protein_coding MGP_CASTEiJ_T0059729.1 MGP_CASTEiJ_G0026184.1 mouse_genomes_project 2 183873243 183890242 - MGP_CASTEiJ_P0059729 Chrna4 protein_coding protein_coding MGP_CASTEiJ_T0059730.1 MGP_CASTEiJ_G0026184.1 mouse_genomes_project 2 183880362 183890162 - Chrna4 protein_coding processed_transcript MGP_CASTEiJ_T0059731.1 MGP_CASTEiJ_G0026184.1 mouse_genomes_project 2 183884964 183896214 - MGP_CASTEiJ_P0059731 Chrna4 protein_coding protein_coding MGP_CASTEiJ_T0004019.1 MGP_CASTEiJ_G0003565.1 mouse_genomes_project 2 164793149 164845116 - Gm16751 antisense antisense MGP_CASTEiJ_T0003867.1 MGP_CASTEiJ_G0003458.1 mouse_genomes_project 2 67873706 67875400 + Gm13596 antisense antisense MGP_CASTEiJ_T0053583.1 MGP_CASTEiJ_G0024748.1 mouse_genomes_project 2 27840493 27857628 - MGP_CASTEiJ_P0053583 Wdr34 protein_coding protein_coding MGP_CASTEiJ_T0053584.1 MGP_CASTEiJ_G0024748.1 mouse_genomes_project 2 27840859 27841453 - Wdr34 protein_coding retained_intron MGP_CASTEiJ_T0053585.1 MGP_CASTEiJ_G0024748.1 mouse_genomes_project 2 27842744 27843968 - Wdr34 protein_coding retained_intron MGP_CASTEiJ_T0053586.1 MGP_CASTEiJ_G0024748.1 mouse_genomes_project 2 27855925 27857608 - Wdr34 protein_coding processed_transcript MGP_CASTEiJ_T0055828.1 MGP_CASTEiJ_G0025302.1 mouse_genomes_project 2 90750363 90752020 - MGP_CASTEiJ_P0055828 Olfr1259 protein_coding protein_coding MGP_CASTEiJ_T0055690.1 MGP_CASTEiJ_G0025191.1 mouse_genomes_project 2 87887669 87888614 + MGP_CASTEiJ_P0055690 Olfr1120 protein_coding protein_coding MGP_CASTEiJ_T0054559.1 MGP_CASTEiJ_G0024916.1 mouse_genomes_project 2 47492744 47586311 + MGP_CASTEiJ_P0054559 Acvr2a protein_coding protein_coding MGP_CASTEiJ_T0054560.1 MGP_CASTEiJ_G0024916.1 mouse_genomes_project 2 47573406 47583298 + Acvr2a protein_coding processed_transcript MGP_CASTEiJ_T0058639.1 MGP_CASTEiJ_G0025937.1 mouse_genomes_project 2 159767567 159789918 - MGP_CASTEiJ_P0058639 Nfs1 protein_coding protein_coding MGP_CASTEiJ_T0058640.1 MGP_CASTEiJ_G0025937.1 mouse_genomes_project 2 159767578 159785657 - MGP_CASTEiJ_P0058640 Nfs1 protein_coding protein_coding MGP_CASTEiJ_T0058641.1 MGP_CASTEiJ_G0025937.1 mouse_genomes_project 2 159784363 159789885 - Nfs1 protein_coding retained_intron MGP_CASTEiJ_T0058642.1 MGP_CASTEiJ_G0025937.1 mouse_genomes_project 2 159787639 159789912 - MGP_CASTEiJ_P0058642 Nfs1 protein_coding protein_coding MGP_CASTEiJ_T0003892.1 MGP_CASTEiJ_G0003474.1 mouse_genomes_project 2 74536119 74536928 - Gm28793 antisense antisense MGP_CASTEiJ_T0054292.1 MGP_CASTEiJ_G0024851.1 mouse_genomes_project 2 33633823 33668271 - MGP_CASTEiJ_P0054292 Ggta1 protein_coding protein_coding MGP_CASTEiJ_T0054293.1 MGP_CASTEiJ_G0024851.1 mouse_genomes_project 2 33633823 33707033 - MGP_CASTEiJ_P0054293 Ggta1 protein_coding protein_coding MGP_CASTEiJ_T0054294.1 MGP_CASTEiJ_G0024851.1 mouse_genomes_project 2 33633827 33707192 - MGP_CASTEiJ_P0054294 Ggta1 protein_coding protein_coding MGP_CASTEiJ_T0054295.1 MGP_CASTEiJ_G0024851.1 mouse_genomes_project 2 33633827 33707016 - MGP_CASTEiJ_P0054295 Ggta1 protein_coding protein_coding MGP_CASTEiJ_T0054296.1 MGP_CASTEiJ_G0024851.1 mouse_genomes_project 2 33635753 33659079 - MGP_CASTEiJ_P0054296 Ggta1 protein_coding protein_coding MGP_CASTEiJ_T0054297.1 MGP_CASTEiJ_G0024851.1 mouse_genomes_project 2 33635753 33659079 - MGP_CASTEiJ_P0054297 Ggta1 protein_coding protein_coding MGP_CASTEiJ_T0054298.1 MGP_CASTEiJ_G0024851.1 mouse_genomes_project 2 33643675 33679305 - MGP_CASTEiJ_P0054298 Ggta1 protein_coding protein_coding MGP_CASTEiJ_T0054299.1 MGP_CASTEiJ_G0024851.1 mouse_genomes_project 2 33659080 33683006 - Ggta1 protein_coding processed_transcript MGP_CASTEiJ_T0054300.1 MGP_CASTEiJ_G0024851.1 mouse_genomes_project 2 33668151 33710388 - Ggta1 protein_coding processed_transcript MGP_CASTEiJ_T0017044.1 MGP_CASTEiJ_G0014745.1 mouse_genomes_project 2 75667112 75673852 + Gm13657 processed_transcript processed_transcript MGP_CASTEiJ_T0058817.1 MGP_CASTEiJ_G0025966.1 mouse_genomes_project 2 161781329 161828020 - MGP_CASTEiJ_P0058817 Tti1 protein_coding protein_coding MGP_CASTEiJ_T0058818.1 MGP_CASTEiJ_G0025966.1 mouse_genomes_project 2 161781338 161808947 - MGP_CASTEiJ_P0058818 Tti1 protein_coding protein_coding MGP_CASTEiJ_T0058819.1 MGP_CASTEiJ_G0025966.1 mouse_genomes_project 2 161794760 161806797 - Tti1 protein_coding processed_transcript MGP_CASTEiJ_T0058820.1 MGP_CASTEiJ_G0025966.1 mouse_genomes_project 2 161808354 161810887 - MGP_CASTEiJ_P0058820 Tti1 protein_coding protein_coding MGP_CASTEiJ_T0057191.1 MGP_CASTEiJ_G0025595.1 mouse_genomes_project 2 124416648 124434589 - MGP_CASTEiJ_P0057191 protein_coding protein_coding MGP_CASTEiJ_T0057192.1 MGP_CASTEiJ_G0025595.1 mouse_genomes_project 2 124416649 124436688 - MGP_CASTEiJ_P0057192 protein_coding protein_coding MGP_CASTEiJ_T0057193.1 MGP_CASTEiJ_G0025595.1 mouse_genomes_project 2 124416884 124427329 - MGP_CASTEiJ_P0057193 protein_coding protein_coding MGP_CASTEiJ_T0057194.1 MGP_CASTEiJ_G0025595.1 mouse_genomes_project 2 124416884 124436932 - MGP_CASTEiJ_P0057194 protein_coding protein_coding MGP_CASTEiJ_T0057195.1 MGP_CASTEiJ_G0025595.1 mouse_genomes_project 2 124416884 124436602 - MGP_CASTEiJ_P0057195 protein_coding protein_coding MGP_CASTEiJ_T0057196.1 MGP_CASTEiJ_G0025595.1 mouse_genomes_project 2 124416955 124425984 - MGP_CASTEiJ_P0057196 protein_coding protein_coding MGP_CASTEiJ_T0057197.1 MGP_CASTEiJ_G0025595.1 mouse_genomes_project 2 124416955 124426010 - MGP_CASTEiJ_P0057197 protein_coding protein_coding MGP_CASTEiJ_T0057198.1 MGP_CASTEiJ_G0025595.1 mouse_genomes_project 2 124417109 124436930 - MGP_CASTEiJ_P0057198 protein_coding protein_coding MGP_CASTEiJ_T0057199.1 MGP_CASTEiJ_G0025595.1 mouse_genomes_project 2 124417144 124424964 - MGP_CASTEiJ_P0057199 protein_coding protein_coding MGP_CASTEiJ_T0057200.1 MGP_CASTEiJ_G0025595.1 mouse_genomes_project 2 124417260 124421868 - protein_coding retained_intron MGP_CASTEiJ_T0100857.1 MGP_CASTEiJ_G0037770.1 mouse_genomes_project 2 24263620 24263752 - Snora17 snoRNA snoRNA MGP_CASTEiJ_T0101573.1 MGP_CASTEiJ_G0038446.1 mouse_genomes_project 2 113479994 113481119 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0007192.1 MGP_CASTEiJ_G0005911.1 mouse_genomes_project 2 164887545 164888660 - Gm14228 lincRNA lincRNA MGP_CASTEiJ_T0058026.1 MGP_CASTEiJ_G0025779.1 mouse_genomes_project 2 149346511 149633039 - MGP_CASTEiJ_P0058026 Ralgapa2 protein_coding protein_coding MGP_CASTEiJ_T0058027.1 MGP_CASTEiJ_G0025779.1 mouse_genomes_project 2 149350579 149564489 - MGP_CASTEiJ_P0058027 Ralgapa2 protein_coding protein_coding MGP_CASTEiJ_T0058028.1 MGP_CASTEiJ_G0025779.1 mouse_genomes_project 2 149351395 149367879 - Ralgapa2 protein_coding processed_transcript MGP_CASTEiJ_T0058029.1 MGP_CASTEiJ_G0025779.1 mouse_genomes_project 2 149354808 149632934 - MGP_CASTEiJ_P0058029 Ralgapa2 protein_coding protein_coding MGP_CASTEiJ_T0058030.1 MGP_CASTEiJ_G0025779.1 mouse_genomes_project 2 149365075 149503747 - MGP_CASTEiJ_P0058030 Ralgapa2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058031.1 MGP_CASTEiJ_G0025779.1 mouse_genomes_project 2 149424060 149632982 - MGP_CASTEiJ_P0058031 Ralgapa2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058032.1 MGP_CASTEiJ_G0025779.1 mouse_genomes_project 2 149424211 149632934 - MGP_CASTEiJ_P0058032 Ralgapa2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0058033.1 MGP_CASTEiJ_G0025779.1 mouse_genomes_project 2 149475870 149523456 - Ralgapa2 protein_coding retained_intron MGP_CASTEiJ_T0058034.1 MGP_CASTEiJ_G0025779.1 mouse_genomes_project 2 149522009 149531905 - Ralgapa2 protein_coding retained_intron MGP_CASTEiJ_T0058035.1 MGP_CASTEiJ_G0025779.1 mouse_genomes_project 2 149539092 149632946 - Ralgapa2 protein_coding retained_intron MGP_CASTEiJ_T0058036.1 MGP_CASTEiJ_G0025779.1 mouse_genomes_project 2 149548443 149633039 - Ralgapa2 protein_coding retained_intron MGP_CASTEiJ_T0058037.1 MGP_CASTEiJ_G0025779.1 mouse_genomes_project 2 149602978 149633061 - Ralgapa2 protein_coding retained_intron MGP_CASTEiJ_T0004022.1 MGP_CASTEiJ_G0003568.1 mouse_genomes_project 2 167545252 167546299 + 2310001K24Rik antisense antisense MGP_CASTEiJ_T0004023.1 MGP_CASTEiJ_G0003568.1 mouse_genomes_project 2 167545840 167546297 + 2310001K24Rik antisense antisense MGP_CASTEiJ_T0054678.1 MGP_CASTEiJ_G0024937.1 mouse_genomes_project 2 52983933 52985394 - MGP_CASTEiJ_P0054678 Rprm protein_coding protein_coding MGP_CASTEiJ_T0003957.1 MGP_CASTEiJ_G0003517.1 mouse_genomes_project 2 131763679 131769448 + Il1bos antisense antisense MGP_CASTEiJ_T0003958.1 MGP_CASTEiJ_G0003517.1 mouse_genomes_project 2 131763684 131769433 + Il1bos antisense antisense MGP_CASTEiJ_T0003959.1 MGP_CASTEiJ_G0003517.1 mouse_genomes_project 2 131766835 131768777 + Il1bos antisense antisense MGP_CASTEiJ_T0054489.1 MGP_CASTEiJ_G0024908.1 mouse_genomes_project 2 37512724 37546677 - MGP_CASTEiJ_P0054489 Ppp6c protein_coding protein_coding MGP_CASTEiJ_T0054490.1 MGP_CASTEiJ_G0024908.1 mouse_genomes_project 2 37515097 37529283 - MGP_CASTEiJ_P0054490 Ppp6c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054491.1 MGP_CASTEiJ_G0024908.1 mouse_genomes_project 2 37515860 37519354 - Ppp6c protein_coding processed_transcript MGP_CASTEiJ_T0004021.1 MGP_CASTEiJ_G0003567.1 mouse_genomes_project 2 167485465 167486035 + 2900093K20Rik antisense antisense MGP_CASTEiJ_T0059082.1 MGP_CASTEiJ_G0026034.1 mouse_genomes_project 2 168719630 168720768 + Wfdc2 protein_coding processed_transcript MGP_CASTEiJ_T0059083.1 MGP_CASTEiJ_G0026034.1 mouse_genomes_project 2 168719796 168725964 + MGP_CASTEiJ_P0059083 Wfdc2 protein_coding protein_coding MGP_CASTEiJ_T0059084.1 MGP_CASTEiJ_G0026034.1 mouse_genomes_project 2 168719916 168725964 + MGP_CASTEiJ_P0059084 Wfdc2 protein_coding protein_coding MGP_CASTEiJ_T0059085.1 MGP_CASTEiJ_G0026034.1 mouse_genomes_project 2 168719931 168725964 + MGP_CASTEiJ_P0059085 Wfdc2 protein_coding protein_coding MGP_CASTEiJ_T0059086.1 MGP_CASTEiJ_G0026034.1 mouse_genomes_project 2 168720236 168721397 + MGP_CASTEiJ_P0059086 Wfdc2 protein_coding protein_coding MGP_CASTEiJ_T0055720.1 MGP_CASTEiJ_G0025212.1 mouse_genomes_project 2 88292025 88292961 - MGP_CASTEiJ_P0055720 Olfr1141 protein_coding protein_coding MGP_CASTEiJ_T0055728.1 MGP_CASTEiJ_G0025219.1 mouse_genomes_project 2 88440823 88441780 + MGP_CASTEiJ_P0055728 Olfr1153 protein_coding protein_coding MGP_CASTEiJ_T0053638.1 MGP_CASTEiJ_G0024757.1 mouse_genomes_project 2 28076646 28120502 + MGP_CASTEiJ_P0053638 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0058181.1 MGP_CASTEiJ_G0025823.1 mouse_genomes_project 2 154968532 154973853 + MGP_CASTEiJ_P0058181 Tmem74b protein_coding protein_coding MGP_CASTEiJ_T0058182.1 MGP_CASTEiJ_G0025823.1 mouse_genomes_project 2 154968835 154978800 + MGP_CASTEiJ_P0058182 Tmem74b protein_coding protein_coding MGP_CASTEiJ_T0055809.1 MGP_CASTEiJ_G0025289.1 mouse_genomes_project 2 90419588 90420533 - MGP_CASTEiJ_P0055809 Olfr1247 protein_coding protein_coding MGP_CASTEiJ_T0055810.1 MGP_CASTEiJ_G0025289.1 mouse_genomes_project 2 90419588 90425458 - MGP_CASTEiJ_P0055810 Olfr1247 protein_coding protein_coding MGP_CASTEiJ_T0055811.1 MGP_CASTEiJ_G0025289.1 mouse_genomes_project 2 90420289 90422078 - MGP_CASTEiJ_P0055811 Olfr1247 protein_coding protein_coding MGP_CASTEiJ_T0013267.1 MGP_CASTEiJ_G0011430.1 mouse_genomes_project 2 101650910 101652241 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013194.1 MGP_CASTEiJ_G0011357.1 mouse_genomes_project 2 77227063 77227488 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0057923.1 MGP_CASTEiJ_G0025759.1 mouse_genomes_project 2 146948037 147033339 - MGP_CASTEiJ_P0057923 Rrbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057924.1 MGP_CASTEiJ_G0025759.1 mouse_genomes_project 2 146966479 146972711 - Rrbp1 protein_coding processed_transcript MGP_CASTEiJ_T0057925.1 MGP_CASTEiJ_G0025759.1 mouse_genomes_project 2 146966479 147033461 - MGP_CASTEiJ_P0057925 Rrbp1 protein_coding protein_coding MGP_CASTEiJ_T0057926.1 MGP_CASTEiJ_G0025759.1 mouse_genomes_project 2 146967214 146968824 - Rrbp1 protein_coding processed_transcript MGP_CASTEiJ_T0057927.1 MGP_CASTEiJ_G0025759.1 mouse_genomes_project 2 146969579 146975611 - Rrbp1 protein_coding processed_transcript MGP_CASTEiJ_T0057928.1 MGP_CASTEiJ_G0025759.1 mouse_genomes_project 2 146976811 146978074 - Rrbp1 protein_coding processed_transcript MGP_CASTEiJ_T0057929.1 MGP_CASTEiJ_G0025759.1 mouse_genomes_project 2 146980769 146987608 - Rrbp1 protein_coding processed_transcript MGP_CASTEiJ_T0057930.1 MGP_CASTEiJ_G0025759.1 mouse_genomes_project 2 146984851 147003114 - Rrbp1 protein_coding processed_transcript MGP_CASTEiJ_T0057931.1 MGP_CASTEiJ_G0025759.1 mouse_genomes_project 2 147005805 147033461 - MGP_CASTEiJ_P0057931 Rrbp1 protein_coding protein_coding MGP_CASTEiJ_T0003820.1 MGP_CASTEiJ_G0003420.1 mouse_genomes_project 2 29647452 29659560 - Gm13427 antisense antisense MGP_CASTEiJ_T0003898.1 MGP_CASTEiJ_G0003477.1 mouse_genomes_project 2 76664644 76730901 + Gm13938 antisense antisense MGP_CASTEiJ_T0013280.1 MGP_CASTEiJ_G0011443.1 mouse_genomes_project 2 105803488 105804511 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055042.1 MGP_CASTEiJ_G0025000.1 mouse_genomes_project 2 69217493 69253331 - MGP_CASTEiJ_P0055042 Ccdc173 protein_coding protein_coding MGP_CASTEiJ_T0055043.1 MGP_CASTEiJ_G0025000.1 mouse_genomes_project 2 69242552 69243584 - Ccdc173 protein_coding processed_transcript MGP_CASTEiJ_T0013438.1 MGP_CASTEiJ_G0011601.1 mouse_genomes_project 2 170808159 170808655 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102231.1 MGP_CASTEiJ_G0038956.1 mouse_genomes_project 2 87085935 87086877 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013379.1 MGP_CASTEiJ_G0011542.1 mouse_genomes_project 2 148789378 148789690 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006940.1 MGP_CASTEiJ_G0005711.1 mouse_genomes_project 2 3226933 3235107 + Gm10857 lincRNA lincRNA MGP_CASTEiJ_T0006941.1 MGP_CASTEiJ_G0005711.1 mouse_genomes_project 2 3226947 3235052 + Gm10857 lincRNA lincRNA MGP_CASTEiJ_T0055611.1 MGP_CASTEiJ_G0025115.1 mouse_genomes_project 2 85730187 85731117 - MGP_CASTEiJ_P0055611 Olfr992 protein_coding protein_coding MGP_CASTEiJ_T0053598.1 MGP_CASTEiJ_G0024750.1 mouse_genomes_project 2 27909876 27911969 - Zdhhc12 protein_coding processed_transcript MGP_CASTEiJ_T0053599.1 MGP_CASTEiJ_G0024750.1 mouse_genomes_project 2 27909876 27912598 - MGP_CASTEiJ_P0053599 Zdhhc12 protein_coding protein_coding MGP_CASTEiJ_T0053600.1 MGP_CASTEiJ_G0024750.1 mouse_genomes_project 2 27909883 27912585 - MGP_CASTEiJ_P0053600 Zdhhc12 protein_coding protein_coding MGP_CASTEiJ_T0053601.1 MGP_CASTEiJ_G0024750.1 mouse_genomes_project 2 27910263 27912566 - Zdhhc12 protein_coding retained_intron MGP_CASTEiJ_T0057019.1 MGP_CASTEiJ_G0025561.1 mouse_genomes_project 2 122991066 123032050 - MGP_CASTEiJ_P0057019 Tgm5 protein_coding protein_coding MGP_CASTEiJ_T0057020.1 MGP_CASTEiJ_G0025561.1 mouse_genomes_project 2 123019305 123032031 - Tgm5 protein_coding retained_intron MGP_CASTEiJ_T0055545.1 MGP_CASTEiJ_G0025096.1 mouse_genomes_project 2 84942181 84952864 + MGP_CASTEiJ_P0055545 Med19 protein_coding protein_coding MGP_CASTEiJ_T0055546.1 MGP_CASTEiJ_G0025096.1 mouse_genomes_project 2 84950288 84952151 + Med19 protein_coding processed_transcript MGP_CASTEiJ_T0053105.1 MGP_CASTEiJ_G0024663.1 mouse_genomes_project 2 23263178 23266452 + MGP_CASTEiJ_P0053105 Obp2a protein_coding protein_coding MGP_CASTEiJ_T0007134.1 MGP_CASTEiJ_G0005864.1 mouse_genomes_project 2 127491990 127493279 - Gm14003 lincRNA lincRNA MGP_CASTEiJ_T0055771.1 MGP_CASTEiJ_G0025260.1 mouse_genomes_project 2 89785999 89786935 - MGP_CASTEiJ_P0055771 Olfr1213 protein_coding protein_coding MGP_CASTEiJ_T0058088.1 MGP_CASTEiJ_G0025801.1 mouse_genomes_project 2 152257717 152258315 - MGP_CASTEiJ_P0058088 protein_coding protein_coding MGP_CASTEiJ_T0003956.1 MGP_CASTEiJ_G0003516.1 mouse_genomes_project 2 131634948 131656099 + Gm14024 antisense antisense MGP_CASTEiJ_T0058750.1 MGP_CASTEiJ_G0025953.1 mouse_genomes_project 2 160729929 160800251 - MGP_CASTEiJ_P0058750 Soga1 protein_coding protein_coding MGP_CASTEiJ_T0058751.1 MGP_CASTEiJ_G0025953.1 mouse_genomes_project 2 160737747 160744389 - Soga1 protein_coding processed_transcript MGP_CASTEiJ_T0058752.1 MGP_CASTEiJ_G0025953.1 mouse_genomes_project 2 160756006 160759191 - Soga1 protein_coding processed_transcript MGP_CASTEiJ_T0055646.1 MGP_CASTEiJ_G0025148.1 mouse_genomes_project 2 86617352 86618297 - MGP_CASTEiJ_P0055646 Olfr1044 protein_coding protein_coding MGP_CASTEiJ_T0007126.1 MGP_CASTEiJ_G0005858.1 mouse_genomes_project 2 120053550 120059493 - A930104D05Rik lincRNA lincRNA MGP_CASTEiJ_T0007127.1 MGP_CASTEiJ_G0005858.1 mouse_genomes_project 2 120056339 120059325 - A930104D05Rik lincRNA lincRNA MGP_CASTEiJ_T0057474.1 MGP_CASTEiJ_G0025657.1 mouse_genomes_project 2 131228525 131264449 + MGP_CASTEiJ_P0057474 Fbln7 protein_coding protein_coding MGP_CASTEiJ_T0057475.1 MGP_CASTEiJ_G0025657.1 mouse_genomes_project 2 131229474 131264445 + MGP_CASTEiJ_P0057475 Fbln7 protein_coding protein_coding MGP_CASTEiJ_T0055921.1 MGP_CASTEiJ_G0025326.1 mouse_genomes_project 2 91922498 91931026 - MGP_CASTEiJ_P0055921 Slc39a13 protein_coding protein_coding MGP_CASTEiJ_T0055922.1 MGP_CASTEiJ_G0025326.1 mouse_genomes_project 2 91922498 91930838 - MGP_CASTEiJ_P0055922 Slc39a13 protein_coding protein_coding MGP_CASTEiJ_T0055923.1 MGP_CASTEiJ_G0025326.1 mouse_genomes_project 2 91923577 91930892 - MGP_CASTEiJ_P0055923 Slc39a13 protein_coding protein_coding MGP_CASTEiJ_T0055924.1 MGP_CASTEiJ_G0025326.1 mouse_genomes_project 2 91923825 91926146 - Slc39a13 protein_coding processed_transcript MGP_CASTEiJ_T0055925.1 MGP_CASTEiJ_G0025326.1 mouse_genomes_project 2 91923828 91925090 - Slc39a13 protein_coding processed_transcript MGP_CASTEiJ_T0055926.1 MGP_CASTEiJ_G0025326.1 mouse_genomes_project 2 91924108 91930907 - Slc39a13 protein_coding processed_transcript MGP_CASTEiJ_T0055927.1 MGP_CASTEiJ_G0025326.1 mouse_genomes_project 2 91925344 91926981 - Slc39a13 protein_coding processed_transcript MGP_CASTEiJ_T0055928.1 MGP_CASTEiJ_G0025326.1 mouse_genomes_project 2 91926280 91930848 - Slc39a13 protein_coding processed_transcript MGP_CASTEiJ_T0055929.1 MGP_CASTEiJ_G0025326.1 mouse_genomes_project 2 91926850 91930796 - MGP_CASTEiJ_P0055929 Slc39a13 protein_coding protein_coding MGP_CASTEiJ_T0055930.1 MGP_CASTEiJ_G0025326.1 mouse_genomes_project 2 91929038 91929479 - Slc39a13 protein_coding processed_transcript MGP_CASTEiJ_T0055931.1 MGP_CASTEiJ_G0025326.1 mouse_genomes_project 2 91929725 91930848 - Slc39a13 protein_coding processed_transcript MGP_CASTEiJ_T0013061.1 MGP_CASTEiJ_G0011224.1 mouse_genomes_project 2 21151989 21152893 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055786.1 MGP_CASTEiJ_G0025272.1 mouse_genomes_project 2 90004834 90005770 - MGP_CASTEiJ_P0055786 Olfr1225 protein_coding protein_coding MGP_CASTEiJ_T0013162.1 MGP_CASTEiJ_G0011325.1 mouse_genomes_project 2 61771065 61772646 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013429.1 MGP_CASTEiJ_G0011592.1 mouse_genomes_project 2 165238589 165239500 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055697.1 MGP_CASTEiJ_G0025198.1 mouse_genomes_project 2 88027635 88030967 - MGP_CASTEiJ_P0055697 Pramel7 protein_coding protein_coding MGP_CASTEiJ_T0055698.1 MGP_CASTEiJ_G0025198.1 mouse_genomes_project 2 88029432 88035360 - Pramel7 protein_coding processed_transcript MGP_CASTEiJ_T0055699.1 MGP_CASTEiJ_G0025198.1 mouse_genomes_project 2 88029526 88035550 - Pramel7 protein_coding processed_transcript MGP_CASTEiJ_T0055700.1 MGP_CASTEiJ_G0025198.1 mouse_genomes_project 2 88029668 88035369 - Pramel7 protein_coding processed_transcript MGP_CASTEiJ_T0010148.1 MGP_CASTEiJ_G0008336.1 mouse_genomes_project 2 93159395 93159493 + Mir1955 miRNA miRNA MGP_CASTEiJ_T0053779.1 MGP_CASTEiJ_G0024777.1 mouse_genomes_project 2 28913921 28955214 + MGP_CASTEiJ_P0053779 Usp20 protein_coding unknown_likely_coding MGP_CASTEiJ_T0053780.1 MGP_CASTEiJ_G0024777.1 mouse_genomes_project 2 28913962 28957285 + MGP_CASTEiJ_P0053780 Usp20 protein_coding protein_coding MGP_CASTEiJ_T0053781.1 MGP_CASTEiJ_G0024777.1 mouse_genomes_project 2 28914017 28915917 + Usp20 protein_coding retained_intron MGP_CASTEiJ_T0053782.1 MGP_CASTEiJ_G0024777.1 mouse_genomes_project 2 28914046 28939935 + MGP_CASTEiJ_P0053782 Usp20 protein_coding protein_coding MGP_CASTEiJ_T0053783.1 MGP_CASTEiJ_G0024777.1 mouse_genomes_project 2 28914080 28935331 + MGP_CASTEiJ_P0053783 Usp20 protein_coding protein_coding MGP_CASTEiJ_T0053784.1 MGP_CASTEiJ_G0024777.1 mouse_genomes_project 2 28914112 28932161 + MGP_CASTEiJ_P0053784 Usp20 protein_coding protein_coding MGP_CASTEiJ_T0053785.1 MGP_CASTEiJ_G0024777.1 mouse_genomes_project 2 28927260 28935000 + MGP_CASTEiJ_P0053785 Usp20 protein_coding protein_coding MGP_CASTEiJ_T0053786.1 MGP_CASTEiJ_G0024777.1 mouse_genomes_project 2 28927361 28935331 + MGP_CASTEiJ_P0053786 Usp20 protein_coding protein_coding MGP_CASTEiJ_T0053787.1 MGP_CASTEiJ_G0024777.1 mouse_genomes_project 2 28927647 28957281 + MGP_CASTEiJ_P0053787 Usp20 protein_coding protein_coding MGP_CASTEiJ_T0053788.1 MGP_CASTEiJ_G0024777.1 mouse_genomes_project 2 28927653 28938735 + Usp20 protein_coding processed_transcript MGP_CASTEiJ_T0053789.1 MGP_CASTEiJ_G0024777.1 mouse_genomes_project 2 28930944 28938764 + MGP_CASTEiJ_P0053789 Usp20 protein_coding protein_coding MGP_CASTEiJ_T0053790.1 MGP_CASTEiJ_G0024777.1 mouse_genomes_project 2 28934942 28936095 + Usp20 protein_coding retained_intron MGP_CASTEiJ_T0053791.1 MGP_CASTEiJ_G0024777.1 mouse_genomes_project 2 28953474 28955037 + Usp20 protein_coding retained_intron MGP_CASTEiJ_T0003990.1 MGP_CASTEiJ_G0003538.1 mouse_genomes_project 2 148628108 148632444 - Gm14092 antisense antisense MGP_CASTEiJ_T0013382.1 MGP_CASTEiJ_G0011545.1 mouse_genomes_project 2 150466374 150466857 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0055089.1 MGP_CASTEiJ_G0025010.1 mouse_genomes_project 2 70203614 70204475 - MGP_CASTEiJ_P0055089 Gm26558 protein_coding protein_coding MGP_CASTEiJ_T0053984.1 MGP_CASTEiJ_G0024803.1 mouse_genomes_project 2 30449541 30486468 - MGP_CASTEiJ_P0053984 Slc25a25 protein_coding protein_coding MGP_CASTEiJ_T0053985.1 MGP_CASTEiJ_G0024803.1 mouse_genomes_project 2 30449541 30466167 - MGP_CASTEiJ_P0053985 Slc25a25 protein_coding protein_coding MGP_CASTEiJ_T0053986.1 MGP_CASTEiJ_G0024803.1 mouse_genomes_project 2 30449544 30486491 - MGP_CASTEiJ_P0053986 Slc25a25 protein_coding protein_coding MGP_CASTEiJ_T0053987.1 MGP_CASTEiJ_G0024803.1 mouse_genomes_project 2 30450024 30465800 - MGP_CASTEiJ_P0053987 Slc25a25 protein_coding protein_coding MGP_CASTEiJ_T0053988.1 MGP_CASTEiJ_G0024803.1 mouse_genomes_project 2 30450114 30459060 - MGP_CASTEiJ_P0053988 Slc25a25 protein_coding protein_coding MGP_CASTEiJ_T0053989.1 MGP_CASTEiJ_G0024803.1 mouse_genomes_project 2 30451094 30486421 - MGP_CASTEiJ_P0053989 Slc25a25 protein_coding unknown_likely_coding MGP_CASTEiJ_T0053990.1 MGP_CASTEiJ_G0024803.1 mouse_genomes_project 2 30451263 30451626 - Slc25a25 protein_coding retained_intron MGP_CASTEiJ_T0053991.1 MGP_CASTEiJ_G0024803.1 mouse_genomes_project 2 30452146 30455505 - Slc25a25 protein_coding retained_intron MGP_CASTEiJ_T0053992.1 MGP_CASTEiJ_G0024803.1 mouse_genomes_project 2 30452226 30452885 - Slc25a25 protein_coding retained_intron MGP_CASTEiJ_T0053993.1 MGP_CASTEiJ_G0024803.1 mouse_genomes_project 2 30452472 30466153 - MGP_CASTEiJ_P0053993 Slc25a25 protein_coding protein_coding MGP_CASTEiJ_T0053994.1 MGP_CASTEiJ_G0024803.1 mouse_genomes_project 2 30454102 30457035 - MGP_CASTEiJ_P0053994 Slc25a25 protein_coding protein_coding MGP_CASTEiJ_T0053995.1 MGP_CASTEiJ_G0024803.1 mouse_genomes_project 2 30454184 30466152 - MGP_CASTEiJ_P0053995 Slc25a25 protein_coding protein_coding MGP_CASTEiJ_T0053996.1 MGP_CASTEiJ_G0024803.1 mouse_genomes_project 2 30462396 30466217 - Slc25a25 protein_coding retained_intron MGP_CASTEiJ_T0056624.1 MGP_CASTEiJ_G0025485.1 mouse_genomes_project 2 115766382 115774380 - MGP_CASTEiJ_P0056624 Zfp770 protein_coding protein_coding MGP_CASTEiJ_T0056625.1 MGP_CASTEiJ_G0025485.1 mouse_genomes_project 2 115771482 115774351 - Zfp770 protein_coding processed_transcript MGP_CASTEiJ_T0059655.1 MGP_CASTEiJ_G0026169.1 mouse_genomes_project 2 183260195 183278862 + MGP_CASTEiJ_P0059655 Slco4a1 protein_coding protein_coding MGP_CASTEiJ_T0059656.1 MGP_CASTEiJ_G0026169.1 mouse_genomes_project 2 183260284 183278840 + Slco4a1 protein_coding processed_transcript MGP_CASTEiJ_T0059657.1 MGP_CASTEiJ_G0026169.1 mouse_genomes_project 2 183264932 183278862 + MGP_CASTEiJ_P0059657 Slco4a1 protein_coding protein_coding MGP_CASTEiJ_T0059658.1 MGP_CASTEiJ_G0026169.1 mouse_genomes_project 2 183271034 183272358 + Slco4a1 protein_coding retained_intron MGP_CASTEiJ_T0059659.1 MGP_CASTEiJ_G0026169.1 mouse_genomes_project 2 183276429 183278847 + Slco4a1 protein_coding retained_intron MGP_CASTEiJ_T0059370.1 MGP_CASTEiJ_G0026095.1 mouse_genomes_project 2 172363851 172406390 + Ptpn1 protein_coding processed_transcript MGP_CASTEiJ_T0059371.1 MGP_CASTEiJ_G0026095.1 mouse_genomes_project 2 172364121 172411038 + MGP_CASTEiJ_P0059371 Ptpn1 protein_coding protein_coding MGP_CASTEiJ_T0059372.1 MGP_CASTEiJ_G0026095.1 mouse_genomes_project 2 172364166 172411038 + Ptpn1 protein_coding processed_transcript MGP_CASTEiJ_T0059373.1 MGP_CASTEiJ_G0026095.1 mouse_genomes_project 2 172364166 172399439 + Ptpn1 protein_coding processed_transcript MGP_CASTEiJ_T0059374.1 MGP_CASTEiJ_G0026095.1 mouse_genomes_project 2 172364189 172399387 + Ptpn1 protein_coding processed_transcript MGP_CASTEiJ_T0059375.1 MGP_CASTEiJ_G0026095.1 mouse_genomes_project 2 172364189 172395342 + Ptpn1 protein_coding processed_transcript MGP_CASTEiJ_T0059376.1 MGP_CASTEiJ_G0026095.1 mouse_genomes_project 2 172364253 172407276 + MGP_CASTEiJ_P0059376 Ptpn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059377.1 MGP_CASTEiJ_G0026095.1 mouse_genomes_project 2 172382714 172396722 + Ptpn1 protein_coding processed_transcript MGP_CASTEiJ_T0006965.1 MGP_CASTEiJ_G0005730.1 mouse_genomes_project 2 20176912 20184556 + 1700092C17Rik lincRNA lincRNA MGP_CASTEiJ_T0006966.1 MGP_CASTEiJ_G0005730.1 mouse_genomes_project 2 20184255 20184524 + 1700092C17Rik lincRNA lincRNA MGP_CASTEiJ_T0017054.1 MGP_CASTEiJ_G0014754.1 mouse_genomes_project 2 89941235 89947592 - Gm13764 processed_transcript processed_transcript MGP_CASTEiJ_T0057493.1 MGP_CASTEiJ_G0025665.1 mouse_genomes_project 2 131584463 131597471 + MGP_CASTEiJ_P0057493 Slc20a1 protein_coding protein_coding MGP_CASTEiJ_T0057494.1 MGP_CASTEiJ_G0025665.1 mouse_genomes_project 2 131584500 131586880 + Slc20a1 protein_coding retained_intron MGP_CASTEiJ_T0057495.1 MGP_CASTEiJ_G0025665.1 mouse_genomes_project 2 131584502 131590977 + Slc20a1 protein_coding processed_transcript MGP_CASTEiJ_T0057496.1 MGP_CASTEiJ_G0025665.1 mouse_genomes_project 2 131584502 131586879 + Slc20a1 protein_coding retained_intron MGP_CASTEiJ_T0057497.1 MGP_CASTEiJ_G0025665.1 mouse_genomes_project 2 131584843 131585521 + MGP_CASTEiJ_P0057497 Slc20a1 protein_coding protein_coding MGP_CASTEiJ_T0057498.1 MGP_CASTEiJ_G0025665.1 mouse_genomes_project 2 131585011 131597464 + MGP_CASTEiJ_P0057498 Slc20a1 protein_coding protein_coding MGP_CASTEiJ_T0057499.1 MGP_CASTEiJ_G0025665.1 mouse_genomes_project 2 131585423 131590191 + MGP_CASTEiJ_P0057499 Slc20a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057500.1 MGP_CASTEiJ_G0025665.1 mouse_genomes_project 2 131592183 131594120 + Slc20a1 protein_coding retained_intron MGP_CASTEiJ_T0057501.1 MGP_CASTEiJ_G0025665.1 mouse_genomes_project 2 131593221 131593888 + Slc20a1 protein_coding retained_intron MGP_CASTEiJ_T0054111.1 MGP_CASTEiJ_G0024824.1 mouse_genomes_project 2 31045243 31048384 + MGP_CASTEiJ_P0054111 Rpl12 protein_coding protein_coding MGP_CASTEiJ_T0054112.1 MGP_CASTEiJ_G0024824.1 mouse_genomes_project 2 31045404 31049233 + Rpl12 protein_coding retained_intron MGP_CASTEiJ_T0054113.1 MGP_CASTEiJ_G0024824.1 mouse_genomes_project 2 31045413 31047933 + Rpl12 protein_coding retained_intron MGP_CASTEiJ_T0054114.1 MGP_CASTEiJ_G0024824.1 mouse_genomes_project 2 31045416 31046623 + Rpl12 protein_coding retained_intron MGP_CASTEiJ_T0054115.1 MGP_CASTEiJ_G0024824.1 mouse_genomes_project 2 31045424 31046996 + Rpl12 protein_coding retained_intron MGP_CASTEiJ_T0054116.1 MGP_CASTEiJ_G0024824.1 mouse_genomes_project 2 31045424 31047931 + MGP_CASTEiJ_P0054116 Rpl12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054117.1 MGP_CASTEiJ_G0024824.1 mouse_genomes_project 2 31045950 31046751 + Rpl12 protein_coding retained_intron MGP_CASTEiJ_T0058445.1 MGP_CASTEiJ_G0025906.1 mouse_genomes_project 2 158588558 158613722 + MGP_CASTEiJ_P0058445 a protein_coding protein_coding MGP_CASTEiJ_T0058446.1 MGP_CASTEiJ_G0025906.1 mouse_genomes_project 2 158588617 158614099 + MGP_CASTEiJ_P0058446 a protein_coding protein_coding MGP_CASTEiJ_T0058447.1 MGP_CASTEiJ_G0025906.1 mouse_genomes_project 2 158608705 158614098 + MGP_CASTEiJ_P0058447 a protein_coding protein_coding MGP_CASTEiJ_T0058448.1 MGP_CASTEiJ_G0025906.1 mouse_genomes_project 2 158610712 158614098 + a protein_coding retained_intron MGP_CASTEiJ_T0052521.1 MGP_CASTEiJ_G0024560.1 mouse_genomes_project 2 11934758 11936272 + Cacnb2 protein_coding retained_intron MGP_CASTEiJ_T0052522.1 MGP_CASTEiJ_G0024560.1 mouse_genomes_project 2 11935964 12359075 + MGP_CASTEiJ_P0052522 Cacnb2 protein_coding protein_coding MGP_CASTEiJ_T0052523.1 MGP_CASTEiJ_G0024560.1 mouse_genomes_project 2 11936780 12328355 + Cacnb2 protein_coding retained_intron MGP_CASTEiJ_T0052524.1 MGP_CASTEiJ_G0024560.1 mouse_genomes_project 2 12097939 12359074 + Cacnb2 protein_coding processed_transcript MGP_CASTEiJ_T0052525.1 MGP_CASTEiJ_G0024560.1 mouse_genomes_project 2 12123692 12329190 + Cacnb2 protein_coding retained_intron MGP_CASTEiJ_T0052526.1 MGP_CASTEiJ_G0024560.1 mouse_genomes_project 2 12191857 12340743 + Cacnb2 protein_coding retained_intron MGP_CASTEiJ_T0052527.1 MGP_CASTEiJ_G0024560.1 mouse_genomes_project 2 12191923 12357410 + MGP_CASTEiJ_P0052527 Cacnb2 protein_coding protein_coding MGP_CASTEiJ_T0052528.1 MGP_CASTEiJ_G0024560.1 mouse_genomes_project 2 12246007 12340658 + Cacnb2 protein_coding retained_intron MGP_CASTEiJ_T0052529.1 MGP_CASTEiJ_G0024560.1 mouse_genomes_project 2 12246008 12340743 + Cacnb2 protein_coding retained_intron MGP_CASTEiJ_T0052530.1 MGP_CASTEiJ_G0024560.1 mouse_genomes_project 2 12246021 12357348 + MGP_CASTEiJ_P0052530 Cacnb2 protein_coding protein_coding MGP_CASTEiJ_T0052531.1 MGP_CASTEiJ_G0024560.1 mouse_genomes_project 2 12246343 12332223 + Cacnb2 protein_coding retained_intron MGP_CASTEiJ_T0052532.1 MGP_CASTEiJ_G0024560.1 mouse_genomes_project 2 12246773 12268977 + MGP_CASTEiJ_P0052532 Cacnb2 protein_coding protein_coding MGP_CASTEiJ_T0052533.1 MGP_CASTEiJ_G0024560.1 mouse_genomes_project 2 12247100 12333971 + Cacnb2 protein_coding retained_intron MGP_CASTEiJ_T0052534.1 MGP_CASTEiJ_G0024560.1 mouse_genomes_project 2 12247104 12358265 + Cacnb2 protein_coding retained_intron MGP_CASTEiJ_T0052535.1 MGP_CASTEiJ_G0024560.1 mouse_genomes_project 2 12328273 12349894 + MGP_CASTEiJ_P0052535 Cacnb2 protein_coding protein_coding MGP_CASTEiJ_T0052536.1 MGP_CASTEiJ_G0024560.1 mouse_genomes_project 2 12351506 12353986 + Cacnb2 protein_coding retained_intron MGP_CASTEiJ_T0013292.1 MGP_CASTEiJ_G0011455.1 mouse_genomes_project 2 109984236 109985184 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052865.1 MGP_CASTEiJ_G0024616.1 mouse_genomes_project 2 22611211 22613027 + Entpd8 protein_coding retained_intron MGP_CASTEiJ_T0052866.1 MGP_CASTEiJ_G0024616.1 mouse_genomes_project 2 22611229 22616632 + MGP_CASTEiJ_P0052866 Entpd8 protein_coding protein_coding MGP_CASTEiJ_T0052867.1 MGP_CASTEiJ_G0024616.1 mouse_genomes_project 2 22611232 22616632 + MGP_CASTEiJ_P0052867 Entpd8 protein_coding protein_coding MGP_CASTEiJ_T0052868.1 MGP_CASTEiJ_G0024616.1 mouse_genomes_project 2 22611416 22616631 + Entpd8 protein_coding retained_intron MGP_CASTEiJ_T0052869.1 MGP_CASTEiJ_G0024616.1 mouse_genomes_project 2 22612722 22616068 + Entpd8 protein_coding retained_intron MGP_CASTEiJ_T0052870.1 MGP_CASTEiJ_G0024616.1 mouse_genomes_project 2 22612729 22616632 + MGP_CASTEiJ_P0052870 Entpd8 protein_coding protein_coding MGP_CASTEiJ_T0052871.1 MGP_CASTEiJ_G0024616.1 mouse_genomes_project 2 22612944 22614650 + MGP_CASTEiJ_P0052871 Entpd8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052872.1 MGP_CASTEiJ_G0024616.1 mouse_genomes_project 2 22615592 22616490 + Entpd8 protein_coding retained_intron MGP_CASTEiJ_T0017163.1 MGP_CASTEiJ_G0014801.1 mouse_genomes_project 2 163843192 163882918 + 4933416E03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0058982.1 MGP_CASTEiJ_G0026000.1 mouse_genomes_project 2 167510129 167528528 + MGP_CASTEiJ_P0058982 Gdap1l1 protein_coding protein_coding MGP_CASTEiJ_T0058983.1 MGP_CASTEiJ_G0026000.1 mouse_genomes_project 2 167510131 167528187 + MGP_CASTEiJ_P0058983 Gdap1l1 protein_coding protein_coding MGP_CASTEiJ_T0058984.1 MGP_CASTEiJ_G0026000.1 mouse_genomes_project 2 167510131 167527164 + MGP_CASTEiJ_P0058984 Gdap1l1 protein_coding protein_coding MGP_CASTEiJ_T0058985.1 MGP_CASTEiJ_G0026000.1 mouse_genomes_project 2 167510182 167527006 + MGP_CASTEiJ_P0058985 Gdap1l1 protein_coding protein_coding MGP_CASTEiJ_T0058101.1 MGP_CASTEiJ_G0025806.1 mouse_genomes_project 2 153775179 153783678 + MGP_CASTEiJ_P0058101 Cst7 protein_coding protein_coding MGP_CASTEiJ_T0056783.1 MGP_CASTEiJ_G0025520.1 mouse_genomes_project 2 121067066 121080869 + MGP_CASTEiJ_P0056783 Spint1 protein_coding protein_coding MGP_CASTEiJ_T0056784.1 MGP_CASTEiJ_G0025520.1 mouse_genomes_project 2 121067181 121080550 + MGP_CASTEiJ_P0056784 Spint1 protein_coding protein_coding MGP_CASTEiJ_T0056785.1 MGP_CASTEiJ_G0025520.1 mouse_genomes_project 2 121067257 121080882 + MGP_CASTEiJ_P0056785 Spint1 protein_coding protein_coding MGP_CASTEiJ_T0056786.1 MGP_CASTEiJ_G0025520.1 mouse_genomes_project 2 121077722 121080257 + Spint1 protein_coding retained_intron MGP_CASTEiJ_T0056787.1 MGP_CASTEiJ_G0025520.1 mouse_genomes_project 2 121079559 121080404 + Spint1 protein_coding retained_intron MGP_CASTEiJ_T0099638.1 MGP_CASTEiJ_G0036551.1 mouse_genomes_project 2 71038639 71038740 - Gm23166 snRNA snRNA MGP_CASTEiJ_T0055284.1 MGP_CASTEiJ_G0025047.1 mouse_genomes_project 2 74551549 74589342 + MGP_CASTEiJ_P0055284 Hoxd3 protein_coding protein_coding MGP_CASTEiJ_T0055289.1 MGP_CASTEiJ_G0025047.1 mouse_genomes_project 2 74572342 74585277 + MGP_CASTEiJ_P0055289 Hoxd3 protein_coding protein_coding MGP_CASTEiJ_T0055290.1 MGP_CASTEiJ_G0025047.1 mouse_genomes_project 2 74576772 74588986 + MGP_CASTEiJ_P0055290 Hoxd3 protein_coding protein_coding MGP_CASTEiJ_T0055291.1 MGP_CASTEiJ_G0025047.1 mouse_genomes_project 2 74579855 74588971 + MGP_CASTEiJ_P0055291 Hoxd3 protein_coding protein_coding MGP_CASTEiJ_T0055292.1 MGP_CASTEiJ_G0025047.1 mouse_genomes_project 2 74586744 74587667 + MGP_CASTEiJ_P0055292 Hoxd3 protein_coding protein_coding MGP_CASTEiJ_T0055293.1 MGP_CASTEiJ_G0025047.1 mouse_genomes_project 2 74586792 74589513 + Hoxd3 protein_coding retained_intron MGP_CASTEiJ_T0056495.1 MGP_CASTEiJ_G0025425.1 mouse_genomes_project 2 111130754 111184804 + MGP_CASTEiJ_P0056495 Bdnf protein_coding protein_coding MGP_CASTEiJ_T0056496.1 MGP_CASTEiJ_G0025425.1 mouse_genomes_project 2 111131951 111184804 + MGP_CASTEiJ_P0056496 Bdnf protein_coding protein_coding MGP_CASTEiJ_T0056497.1 MGP_CASTEiJ_G0025425.1 mouse_genomes_project 2 111131951 111184804 + MGP_CASTEiJ_P0056497 Bdnf protein_coding protein_coding MGP_CASTEiJ_T0056498.1 MGP_CASTEiJ_G0025425.1 mouse_genomes_project 2 111131951 111184804 + MGP_CASTEiJ_P0056498 Bdnf protein_coding protein_coding MGP_CASTEiJ_T0056499.1 MGP_CASTEiJ_G0025425.1 mouse_genomes_project 2 111133086 111184804 + MGP_CASTEiJ_P0056499 Bdnf protein_coding protein_coding MGP_CASTEiJ_T0056500.1 MGP_CASTEiJ_G0025425.1 mouse_genomes_project 2 111149808 111184804 + MGP_CASTEiJ_P0056500 Bdnf protein_coding protein_coding MGP_CASTEiJ_T0056501.1 MGP_CASTEiJ_G0025425.1 mouse_genomes_project 2 111150404 111184804 + MGP_CASTEiJ_P0056501 Bdnf protein_coding protein_coding MGP_CASTEiJ_T0056502.1 MGP_CASTEiJ_G0025425.1 mouse_genomes_project 2 111150920 111184804 + MGP_CASTEiJ_P0056502 Bdnf protein_coding protein_coding MGP_CASTEiJ_T0056503.1 MGP_CASTEiJ_G0025425.1 mouse_genomes_project 2 111151766 111184804 + MGP_CASTEiJ_P0056503 Bdnf protein_coding protein_coding MGP_CASTEiJ_T0056504.1 MGP_CASTEiJ_G0025425.1 mouse_genomes_project 2 111151826 111184804 + MGP_CASTEiJ_P0056504 Bdnf protein_coding protein_coding MGP_CASTEiJ_T0056505.1 MGP_CASTEiJ_G0025425.1 mouse_genomes_project 2 111167241 111184804 + MGP_CASTEiJ_P0056505 Bdnf protein_coding protein_coding MGP_CASTEiJ_T0055788.1 MGP_CASTEiJ_G0025274.1 mouse_genomes_project 2 90057487 90058459 - MGP_CASTEiJ_P0055788 Olfr1228 protein_coding protein_coding MGP_CASTEiJ_T0056557.1 MGP_CASTEiJ_G0025459.1 mouse_genomes_project 2 113443856 113444819 - MGP_CASTEiJ_P0056557 Olfr1308 protein_coding protein_coding MGP_CASTEiJ_T0055105.1 MGP_CASTEiJ_G0025013.1 mouse_genomes_project 2 70522647 70621412 - MGP_CASTEiJ_P0055105 Mettl8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055106.1 MGP_CASTEiJ_G0025013.1 mouse_genomes_project 2 70522647 70621412 - MGP_CASTEiJ_P0055106 Mettl8 protein_coding protein_coding MGP_CASTEiJ_T0055107.1 MGP_CASTEiJ_G0025013.1 mouse_genomes_project 2 70522647 70621412 - MGP_CASTEiJ_P0055107 Mettl8 protein_coding protein_coding MGP_CASTEiJ_T0055108.1 MGP_CASTEiJ_G0025013.1 mouse_genomes_project 2 70522647 70621412 - MGP_CASTEiJ_P0055108 Mettl8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055109.1 MGP_CASTEiJ_G0025013.1 mouse_genomes_project 2 70523529 70581601 - MGP_CASTEiJ_P0055109 Mettl8 protein_coding protein_coding MGP_CASTEiJ_T0055110.1 MGP_CASTEiJ_G0025013.1 mouse_genomes_project 2 70524261 70531478 - MGP_CASTEiJ_P0055110 Mettl8 protein_coding protein_coding MGP_CASTEiJ_T0055111.1 MGP_CASTEiJ_G0025013.1 mouse_genomes_project 2 70524579 70539762 - MGP_CASTEiJ_P0055111 Mettl8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055112.1 MGP_CASTEiJ_G0025013.1 mouse_genomes_project 2 70525143 70534244 - Mettl8 protein_coding retained_intron MGP_CASTEiJ_T0055113.1 MGP_CASTEiJ_G0025013.1 mouse_genomes_project 2 70536508 70621401 - MGP_CASTEiJ_P0055113 Mettl8 protein_coding protein_coding MGP_CASTEiJ_T0055114.1 MGP_CASTEiJ_G0025013.1 mouse_genomes_project 2 70538629 70621412 - Mettl8 protein_coding retained_intron MGP_CASTEiJ_T0055115.1 MGP_CASTEiJ_G0025013.1 mouse_genomes_project 2 70551201 70581605 - Mettl8 protein_coding retained_intron MGP_CASTEiJ_T0052397.1 MGP_CASTEiJ_G0024541.1 mouse_genomes_project 2 8917782 8918441 - MGP_CASTEiJ_P0052397 Gm17490 protein_coding protein_coding MGP_CASTEiJ_T0099660.1 MGP_CASTEiJ_G0036573.1 mouse_genomes_project 2 135333679 135333782 + Gm22245 snRNA snRNA MGP_CASTEiJ_T0055629.1 MGP_CASTEiJ_G0025132.1 mouse_genomes_project 2 86200327 86201263 + MGP_CASTEiJ_P0055629 Olfr1018 protein_coding protein_coding MGP_CASTEiJ_T0059458.1 MGP_CASTEiJ_G0026114.1 mouse_genomes_project 2 175501073 175664924 + MGP_CASTEiJ_P0059458 Dok5 protein_coding protein_coding MGP_CASTEiJ_T0017165.1 MGP_CASTEiJ_G0014803.1 mouse_genomes_project 2 166659488 166665338 + 9430021M05Rik processed_transcript processed_transcript MGP_CASTEiJ_T0058360.1 MGP_CASTEiJ_G0025879.1 mouse_genomes_project 2 157319933 157339773 + MGP_CASTEiJ_P0058360 Bpifb2 protein_coding protein_coding MGP_CASTEiJ_T0058361.1 MGP_CASTEiJ_G0025879.1 mouse_genomes_project 2 157319963 157321274 + Bpifb2 protein_coding retained_intron MGP_CASTEiJ_T0056159.1 MGP_CASTEiJ_G0025360.1 mouse_genomes_project 2 94241652 94382278 - MGP_CASTEiJ_P0056159 Tspan18 protein_coding protein_coding MGP_CASTEiJ_T0056160.1 MGP_CASTEiJ_G0025360.1 mouse_genomes_project 2 94244047 94267627 - MGP_CASTEiJ_P0056160 Tspan18 protein_coding protein_coding MGP_CASTEiJ_T0056161.1 MGP_CASTEiJ_G0025360.1 mouse_genomes_project 2 94357466 94382296 - Tspan18 protein_coding processed_transcript MGP_CASTEiJ_T0056162.1 MGP_CASTEiJ_G0025360.1 mouse_genomes_project 2 94357466 94358712 - Tspan18 protein_coding processed_transcript MGP_CASTEiJ_T0055643.1 MGP_CASTEiJ_G0025145.1 mouse_genomes_project 2 86464661 86465572 + MGP_CASTEiJ_P0055643 Olfr1033 protein_coding protein_coding MGP_CASTEiJ_T0013147.1 MGP_CASTEiJ_G0011310.1 mouse_genomes_project 2 56563934 56564111 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003844.1 MGP_CASTEiJ_G0003440.1 mouse_genomes_project 2 42581435 42587415 - Arhgap15os antisense antisense MGP_CASTEiJ_T0058877.1 MGP_CASTEiJ_G0025979.1 mouse_genomes_project 2 162620261 162638944 + MGP_CASTEiJ_P0058877 Fam83d protein_coding protein_coding MGP_CASTEiJ_T0058878.1 MGP_CASTEiJ_G0025979.1 mouse_genomes_project 2 162633714 162638944 + Fam83d protein_coding retained_intron MGP_CASTEiJ_T0058561.1 MGP_CASTEiJ_G0025927.1 mouse_genomes_project 2 159573615 159575637 + MGP_CASTEiJ_P0058561 Gm15557 protein_coding protein_coding MGP_CASTEiJ_T0057178.1 MGP_CASTEiJ_G0025591.1 mouse_genomes_project 2 124341966 124364331 - MGP_CASTEiJ_P0057178 Duox2 protein_coding protein_coding MGP_CASTEiJ_T0057179.1 MGP_CASTEiJ_G0025591.1 mouse_genomes_project 2 124343157 124359374 - MGP_CASTEiJ_P0057179 Duox2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057180.1 MGP_CASTEiJ_G0025591.1 mouse_genomes_project 2 124345428 124348310 - Duox2 protein_coding processed_transcript MGP_CASTEiJ_T0056894.1 MGP_CASTEiJ_G0025546.1 mouse_genomes_project 2 122215176 122253128 - MGP_CASTEiJ_P0056894 Vps39 protein_coding protein_coding MGP_CASTEiJ_T0056895.1 MGP_CASTEiJ_G0025546.1 mouse_genomes_project 2 122215176 122253116 - MGP_CASTEiJ_P0056895 Vps39 protein_coding protein_coding MGP_CASTEiJ_T0056896.1 MGP_CASTEiJ_G0025546.1 mouse_genomes_project 2 122215554 122253112 - Vps39 protein_coding processed_transcript MGP_CASTEiJ_T0056897.1 MGP_CASTEiJ_G0025546.1 mouse_genomes_project 2 122216771 122218321 - Vps39 protein_coding retained_intron MGP_CASTEiJ_T0056898.1 MGP_CASTEiJ_G0025546.1 mouse_genomes_project 2 122218584 122222254 - Vps39 protein_coding retained_intron MGP_CASTEiJ_T0056899.1 MGP_CASTEiJ_G0025546.1 mouse_genomes_project 2 122220616 122253100 - Vps39 protein_coding retained_intron MGP_CASTEiJ_T0056900.1 MGP_CASTEiJ_G0025546.1 mouse_genomes_project 2 122224620 122232971 - Vps39 protein_coding retained_intron MGP_CASTEiJ_T0056901.1 MGP_CASTEiJ_G0025546.1 mouse_genomes_project 2 122238659 122244166 - Vps39 protein_coding processed_transcript MGP_CASTEiJ_T0056902.1 MGP_CASTEiJ_G0025546.1 mouse_genomes_project 2 122243211 122253112 - Vps39 protein_coding processed_transcript MGP_CASTEiJ_T0056903.1 MGP_CASTEiJ_G0025546.1 mouse_genomes_project 2 122248421 122253116 - Vps39 protein_coding processed_transcript MGP_CASTEiJ_T0057760.1 MGP_CASTEiJ_G0025722.1 mouse_genomes_project 2 134908455 134960273 - MGP_CASTEiJ_P0057760 Prokr2 protein_coding protein_coding MGP_CASTEiJ_T0057761.1 MGP_CASTEiJ_G0025722.1 mouse_genomes_project 2 134944811 134960309 - MGP_CASTEiJ_P0057761 Prokr2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0057762.1 MGP_CASTEiJ_G0025722.1 mouse_genomes_project 2 134945184 134960246 - MGP_CASTEiJ_P0057762 Prokr2 protein_coding protein_coding MGP_CASTEiJ_T0057763.1 MGP_CASTEiJ_G0025722.1 mouse_genomes_project 2 134945184 134960271 - MGP_CASTEiJ_P0057763 Prokr2 protein_coding protein_coding MGP_CASTEiJ_T0057764.1 MGP_CASTEiJ_G0025722.1 mouse_genomes_project 2 134946022 134960293 - MGP_CASTEiJ_P0057764 Prokr2 protein_coding protein_coding MGP_CASTEiJ_T0057765.1 MGP_CASTEiJ_G0025722.1 mouse_genomes_project 2 134956412 134960267 - MGP_CASTEiJ_P0057765 Prokr2 protein_coding protein_coding MGP_CASTEiJ_T0013259.1 MGP_CASTEiJ_G0011422.1 mouse_genomes_project 2 99068907 99069890 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0053628.1 MGP_CASTEiJ_G0024755.1 mouse_genomes_project 2 28019126 28046245 - MGP_CASTEiJ_P0053628 Kyat1 protein_coding protein_coding MGP_CASTEiJ_T0053629.1 MGP_CASTEiJ_G0024755.1 mouse_genomes_project 2 28019128 28046214 - Kyat1 protein_coding processed_transcript MGP_CASTEiJ_T0053630.1 MGP_CASTEiJ_G0024755.1 mouse_genomes_project 2 28019128 28046175 - MGP_CASTEiJ_P0053630 Kyat1 protein_coding protein_coding MGP_CASTEiJ_T0053631.1 MGP_CASTEiJ_G0024755.1 mouse_genomes_project 2 28019133 28046199 - MGP_CASTEiJ_P0053631 Kyat1 protein_coding protein_coding MGP_CASTEiJ_T0053632.1 MGP_CASTEiJ_G0024755.1 mouse_genomes_project 2 28019133 28035939 - MGP_CASTEiJ_P0053632 Kyat1 protein_coding protein_coding MGP_CASTEiJ_T0053633.1 MGP_CASTEiJ_G0024755.1 mouse_genomes_project 2 28019270 28028195 - MGP_CASTEiJ_P0053633 Kyat1 protein_coding protein_coding MGP_CASTEiJ_T0053634.1 MGP_CASTEiJ_G0024755.1 mouse_genomes_project 2 28019270 28028195 - MGP_CASTEiJ_P0053634 Kyat1 protein_coding protein_coding MGP_CASTEiJ_T0053635.1 MGP_CASTEiJ_G0024755.1 mouse_genomes_project 2 28025200 28046189 - Kyat1 protein_coding processed_transcript MGP_CASTEiJ_T0056345.1 MGP_CASTEiJ_G0025393.1 mouse_genomes_project 2 104958845 104996274 - MGP_CASTEiJ_P0056345 Caprin1 protein_coding protein_coding MGP_CASTEiJ_T0056346.1 MGP_CASTEiJ_G0025393.1 mouse_genomes_project 2 104960920 104995729 - MGP_CASTEiJ_P0056346 Caprin1 protein_coding protein_coding MGP_CASTEiJ_T0056347.1 MGP_CASTEiJ_G0025393.1 mouse_genomes_project 2 104963008 104969109 - MGP_CASTEiJ_P0056347 Caprin1 protein_coding protein_coding MGP_CASTEiJ_T0056348.1 MGP_CASTEiJ_G0025393.1 mouse_genomes_project 2 104963713 104968121 - MGP_CASTEiJ_P0056348 Caprin1 protein_coding protein_coding MGP_CASTEiJ_T0056349.1 MGP_CASTEiJ_G0025393.1 mouse_genomes_project 2 104964351 104969012 - Caprin1 protein_coding retained_intron MGP_CASTEiJ_T0056350.1 MGP_CASTEiJ_G0025393.1 mouse_genomes_project 2 104968038 104970596 - Caprin1 protein_coding retained_intron MGP_CASTEiJ_T0056351.1 MGP_CASTEiJ_G0025393.1 mouse_genomes_project 2 104969076 104970039 - Caprin1 protein_coding processed_transcript MGP_CASTEiJ_T0056352.1 MGP_CASTEiJ_G0025393.1 mouse_genomes_project 2 104969325 104975690 - MGP_CASTEiJ_P0056352 Caprin1 protein_coding protein_coding MGP_CASTEiJ_T0056353.1 MGP_CASTEiJ_G0025393.1 mouse_genomes_project 2 104969328 104972333 - Caprin1 protein_coding retained_intron MGP_CASTEiJ_T0056354.1 MGP_CASTEiJ_G0025393.1 mouse_genomes_project 2 104969799 104971979 - Caprin1 protein_coding processed_transcript MGP_CASTEiJ_T0056355.1 MGP_CASTEiJ_G0025393.1 mouse_genomes_project 2 104974285 104995558 - Caprin1 protein_coding processed_transcript MGP_CASTEiJ_T0056356.1 MGP_CASTEiJ_G0025393.1 mouse_genomes_project 2 104975845 104995169 - Caprin1 protein_coding processed_transcript MGP_CASTEiJ_T0056357.1 MGP_CASTEiJ_G0025393.1 mouse_genomes_project 2 104979170 104995598 - Caprin1 protein_coding retained_intron MGP_CASTEiJ_T0056358.1 MGP_CASTEiJ_G0025393.1 mouse_genomes_project 2 104979568 104995493 - Caprin1 protein_coding processed_transcript MGP_CASTEiJ_T0056359.1 MGP_CASTEiJ_G0025393.1 mouse_genomes_project 2 104995076 104996224 - Caprin1 protein_coding retained_intron MGP_CASTEiJ_T0054879.1 MGP_CASTEiJ_G0024969.1 mouse_genomes_project 2 61765390 61798550 + MGP_CASTEiJ_P0054879 Gca protein_coding protein_coding MGP_CASTEiJ_T0054880.1 MGP_CASTEiJ_G0024969.1 mouse_genomes_project 2 61788553 61793947 + Gca protein_coding processed_transcript MGP_CASTEiJ_T0010051.1 MGP_CASTEiJ_G0008239.1 mouse_genomes_project 2 7716854 7716975 + Gm22072 miRNA miRNA MGP_CASTEiJ_T0057201.1 MGP_CASTEiJ_G0025596.1 mouse_genomes_project 2 124497203 124507812 + protein_coding retained_intron MGP_CASTEiJ_T0059473.1 MGP_CASTEiJ_G0026121.1 mouse_genomes_project 2 177325349 177356247 + MGP_CASTEiJ_P0059473 Rtfdc1 protein_coding protein_coding MGP_CASTEiJ_T0059474.1 MGP_CASTEiJ_G0026121.1 mouse_genomes_project 2 177325395 177351332 + Rtfdc1 protein_coding retained_intron MGP_CASTEiJ_T0059477.1 MGP_CASTEiJ_G0026121.1 mouse_genomes_project 2 177337823 177356247 + Rtfdc1 protein_coding processed_transcript MGP_CASTEiJ_T0059475.1 MGP_CASTEiJ_G0026122.1 mouse_genomes_project 2 177335172 177343501 - MGP_CASTEiJ_P0059475 Gcnt7 protein_coding protein_coding MGP_CASTEiJ_T0059476.1 MGP_CASTEiJ_G0026122.1 mouse_genomes_project 2 177335173 177339614 - MGP_CASTEiJ_P0059476 Gcnt7 protein_coding protein_coding MGP_CASTEiJ_T0054354.1 MGP_CASTEiJ_G0024866.1 mouse_genomes_project 2 34830657 34831593 + MGP_CASTEiJ_P0054354 Olfr345 protein_coding protein_coding MGP_CASTEiJ_T0017170.1 MGP_CASTEiJ_G0014806.1 mouse_genomes_project 2 171945767 172011672 + Gm11476 processed_transcript processed_transcript MGP_CASTEiJ_T0054441.1 MGP_CASTEiJ_G0024899.1 mouse_genomes_project 2 36857639 36917634 - MGP_CASTEiJ_P0054441 Psmb7 protein_coding protein_coding MGP_CASTEiJ_T0054442.1 MGP_CASTEiJ_G0024899.1 mouse_genomes_project 2 36884359 36917453 - Psmb7 protein_coding retained_intron MGP_CASTEiJ_T0013058.1 MGP_CASTEiJ_G0011221.1 mouse_genomes_project 2 20655041 20657625 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052618.1 MGP_CASTEiJ_G0024574.1 mouse_genomes_project 2 16163799 16168765 + protein_coding processed_transcript MGP_CASTEiJ_T0052619.1 MGP_CASTEiJ_G0024574.1 mouse_genomes_project 2 16163819 16168918 + protein_coding processed_transcript MGP_CASTEiJ_T0052620.1 MGP_CASTEiJ_G0024574.1 mouse_genomes_project 2 16163864 16220056 + MGP_CASTEiJ_P0052620 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052621.1 MGP_CASTEiJ_G0024574.1 mouse_genomes_project 2 16168964 16202437 + MGP_CASTEiJ_P0052621 protein_coding protein_coding MGP_CASTEiJ_T0013297.1 MGP_CASTEiJ_G0011460.1 mouse_genomes_project 2 111678514 111679499 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013158.1 MGP_CASTEiJ_G0011321.1 mouse_genomes_project 2 59610601 59610848 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007081.1 MGP_CASTEiJ_G0005822.1 mouse_genomes_project 2 95357210 95370051 - lincRNA lincRNA MGP_CASTEiJ_T0007082.1 MGP_CASTEiJ_G0005822.1 mouse_genomes_project 2 95366323 95370070 - lincRNA lincRNA MGP_CASTEiJ_T0003944.1 MGP_CASTEiJ_G0003507.1 mouse_genomes_project 2 123897219 123898156 - Gm14019 antisense antisense MGP_CASTEiJ_T0010132.1 MGP_CASTEiJ_G0008320.1 mouse_genomes_project 2 51147971 51148121 + Gm22095 miRNA miRNA MGP_CASTEiJ_T0056578.1 MGP_CASTEiJ_G0025471.1 mouse_genomes_project 2 113864177 113880039 - MGP_CASTEiJ_P0056578 Emc4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056579.1 MGP_CASTEiJ_G0025471.1 mouse_genomes_project 2 113864651 113868879 - Emc4 protein_coding processed_transcript MGP_CASTEiJ_T0052637.1 MGP_CASTEiJ_G0024581.1 mouse_genomes_project 2 17135623 17138470 + MGP_CASTEiJ_P0052637 Otud1 protein_coding protein_coding MGP_CASTEiJ_T0013028.1 MGP_CASTEiJ_G0011191.1 mouse_genomes_project 2 12022602 12023318 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0058237.1 MGP_CASTEiJ_G0025847.1 mouse_genomes_project 2 155892583 155894783 + MGP_CASTEiJ_P0058237 Defb21 protein_coding protein_coding MGP_CASTEiJ_T0054050.1 MGP_CASTEiJ_G0024814.1 mouse_genomes_project 2 30758775 30767872 - Cdk9 protein_coding retained_intron MGP_CASTEiJ_T0054051.1 MGP_CASTEiJ_G0024814.1 mouse_genomes_project 2 30763640 30769481 - MGP_CASTEiJ_P0054051 Cdk9 protein_coding protein_coding MGP_CASTEiJ_T0054052.1 MGP_CASTEiJ_G0024814.1 mouse_genomes_project 2 30764260 30769606 - MGP_CASTEiJ_P0054052 Cdk9 protein_coding protein_coding MGP_CASTEiJ_T0054053.1 MGP_CASTEiJ_G0024814.1 mouse_genomes_project 2 30764669 30769898 - MGP_CASTEiJ_P0054053 Cdk9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054054.1 MGP_CASTEiJ_G0024814.1 mouse_genomes_project 2 30764921 30766546 - Cdk9 protein_coding retained_intron MGP_CASTEiJ_T0054055.1 MGP_CASTEiJ_G0024814.1 mouse_genomes_project 2 30766356 30767174 - Cdk9 protein_coding retained_intron MGP_CASTEiJ_T0054056.1 MGP_CASTEiJ_G0024814.1 mouse_genomes_project 2 30766480 30767327 - Cdk9 protein_coding retained_intron MGP_CASTEiJ_T0054057.1 MGP_CASTEiJ_G0024814.1 mouse_genomes_project 2 30766680 30769579 - MGP_CASTEiJ_P0054057 Cdk9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054058.1 MGP_CASTEiJ_G0024814.1 mouse_genomes_project 2 30766982 30769078 - MGP_CASTEiJ_P0054058 Cdk9 protein_coding protein_coding MGP_CASTEiJ_T0007202.1 MGP_CASTEiJ_G0005921.1 mouse_genomes_project 2 170240751 170250560 - Platr29 lincRNA lincRNA MGP_CASTEiJ_T0056766.1 MGP_CASTEiJ_G0025516.1 mouse_genomes_project 2 120994616 121036468 - MGP_CASTEiJ_P0056766 Dnajc17 protein_coding protein_coding MGP_CASTEiJ_T0056767.1 MGP_CASTEiJ_G0025516.1 mouse_genomes_project 2 120994682 121008694 - MGP_CASTEiJ_P0056767 Dnajc17 protein_coding unknown_likely_coding MGP_CASTEiJ_T0056769.1 MGP_CASTEiJ_G0025516.1 mouse_genomes_project 2 121001565 121005798 - Dnajc17 protein_coding processed_transcript MGP_CASTEiJ_T0056770.1 MGP_CASTEiJ_G0025516.1 mouse_genomes_project 2 121005835 121036455 - Dnajc17 protein_coding retained_intron MGP_CASTEiJ_T0056610.1 MGP_CASTEiJ_G0025481.1 mouse_genomes_project 2 115405080 115422673 - MGP_CASTEiJ_P0056610 Arhgap11a protein_coding protein_coding MGP_CASTEiJ_T0056611.1 MGP_CASTEiJ_G0025481.1 mouse_genomes_project 2 115407809 115422881 - MGP_CASTEiJ_P0056611 Arhgap11a protein_coding protein_coding MGP_CASTEiJ_T0055312.1 MGP_CASTEiJ_G0025055.1 mouse_genomes_project 2 75842561 75846941 - MGP_CASTEiJ_P0055312 protein_coding protein_coding MGP_CASTEiJ_T0055748.1 MGP_CASTEiJ_G0025238.1 mouse_genomes_project 2 89067266 89068190 - MGP_CASTEiJ_P0055748 Olfr1179 protein_coding protein_coding MGP_CASTEiJ_T0100854.1 MGP_CASTEiJ_G0037767.1 mouse_genomes_project 2 20339650 20339770 + Gm25544 snoRNA snoRNA MGP_CASTEiJ_T0006964.1 MGP_CASTEiJ_G0005729.1 mouse_genomes_project 2 18626722 18654137 + Gm13376 lincRNA lincRNA MGP_CASTEiJ_T0100867.1 MGP_CASTEiJ_G0037780.1 mouse_genomes_project 2 31312139 31312276 - Gm23546 snoRNA snoRNA MGP_CASTEiJ_T0057246.1 MGP_CASTEiJ_G0025604.1 mouse_genomes_project 2 127278904 127283183 - Myef2 protein_coding processed_transcript MGP_CASTEiJ_T0057247.1 MGP_CASTEiJ_G0025604.1 mouse_genomes_project 2 127280462 127318538 - MGP_CASTEiJ_P0057247 Myef2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0057248.1 MGP_CASTEiJ_G0025604.1 mouse_genomes_project 2 127280759 127318569 - MGP_CASTEiJ_P0057248 Myef2 protein_coding protein_coding MGP_CASTEiJ_T0057249.1 MGP_CASTEiJ_G0025604.1 mouse_genomes_project 2 127281931 127318566 - MGP_CASTEiJ_P0057249 Myef2 protein_coding protein_coding MGP_CASTEiJ_T0057250.1 MGP_CASTEiJ_G0025604.1 mouse_genomes_project 2 127281932 127318604 - MGP_CASTEiJ_P0057250 Myef2 protein_coding protein_coding MGP_CASTEiJ_T0057251.1 MGP_CASTEiJ_G0025604.1 mouse_genomes_project 2 127281932 127318603 - MGP_CASTEiJ_P0057251 Myef2 protein_coding protein_coding MGP_CASTEiJ_T0057252.1 MGP_CASTEiJ_G0025604.1 mouse_genomes_project 2 127283005 127311784 - MGP_CASTEiJ_P0057252 Myef2 protein_coding protein_coding MGP_CASTEiJ_T0057253.1 MGP_CASTEiJ_G0025604.1 mouse_genomes_project 2 127289781 127318357 - MGP_CASTEiJ_P0057253 Myef2 protein_coding protein_coding MGP_CASTEiJ_T0057254.1 MGP_CASTEiJ_G0025604.1 mouse_genomes_project 2 127293629 127318518 - Myef2 protein_coding retained_intron MGP_CASTEiJ_T0055821.1 MGP_CASTEiJ_G0025298.1 mouse_genomes_project 2 90654099 90661337 - MGP_CASTEiJ_P0055821 Olfr1256 protein_coding protein_coding MGP_CASTEiJ_T0055822.1 MGP_CASTEiJ_G0025298.1 mouse_genomes_project 2 90654099 90655020 - MGP_CASTEiJ_P0055822 Olfr1256 protein_coding protein_coding MGP_CASTEiJ_T0007162.1 MGP_CASTEiJ_G0005888.1 mouse_genomes_project 2 150903711 150911694 + A530006G24Rik lincRNA lincRNA MGP_CASTEiJ_T0017065.1 MGP_CASTEiJ_G0014760.1 mouse_genomes_project 2 94053309 94058742 + 4631405J19Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017066.1 MGP_CASTEiJ_G0014760.1 mouse_genomes_project 2 94053309 94058742 + 4631405J19Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017067.1 MGP_CASTEiJ_G0014760.1 mouse_genomes_project 2 94054700 94058769 + 4631405J19Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017068.1 MGP_CASTEiJ_G0014760.1 mouse_genomes_project 2 94054701 94057033 + 4631405J19Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017069.1 MGP_CASTEiJ_G0014760.1 mouse_genomes_project 2 94055792 94072934 + 4631405J19Rik processed_transcript processed_transcript MGP_CASTEiJ_T0059722.1 MGP_CASTEiJ_G0026183.1 mouse_genomes_project 2 183837400 183867247 + MGP_CASTEiJ_P0059722 Col20a1 protein_coding protein_coding MGP_CASTEiJ_T0059723.1 MGP_CASTEiJ_G0026183.1 mouse_genomes_project 2 183837400 183868459 + MGP_CASTEiJ_P0059723 Col20a1 protein_coding protein_coding MGP_CASTEiJ_T0059724.1 MGP_CASTEiJ_G0026183.1 mouse_genomes_project 2 183839932 183867247 + MGP_CASTEiJ_P0059724 Col20a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059725.1 MGP_CASTEiJ_G0026183.1 mouse_genomes_project 2 183851381 183854382 + MGP_CASTEiJ_P0059725 Col20a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059726.1 MGP_CASTEiJ_G0026183.1 mouse_genomes_project 2 183864138 183868459 + MGP_CASTEiJ_P0059726 Col20a1 protein_coding protein_coding MGP_CASTEiJ_T0054865.1 MGP_CASTEiJ_G0024967.1 mouse_genomes_project 2 61589423 61666483 - MGP_CASTEiJ_P0054865 Fap protein_coding protein_coding MGP_CASTEiJ_T0054866.1 MGP_CASTEiJ_G0024967.1 mouse_genomes_project 2 61589593 61666388 - Fap protein_coding processed_transcript MGP_CASTEiJ_T0054867.1 MGP_CASTEiJ_G0024967.1 mouse_genomes_project 2 61589603 61591904 - MGP_CASTEiJ_P0054867 Fap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054868.1 MGP_CASTEiJ_G0024967.1 mouse_genomes_project 2 61589664 61666259 - MGP_CASTEiJ_P0054868 Fap protein_coding protein_coding MGP_CASTEiJ_T0054869.1 MGP_CASTEiJ_G0024967.1 mouse_genomes_project 2 61589664 61666259 - MGP_CASTEiJ_P0054869 Fap protein_coding protein_coding MGP_CASTEiJ_T0054870.1 MGP_CASTEiJ_G0024967.1 mouse_genomes_project 2 61589664 61666259 - MGP_CASTEiJ_P0054870 Fap protein_coding protein_coding MGP_CASTEiJ_T0054871.1 MGP_CASTEiJ_G0024967.1 mouse_genomes_project 2 61616919 61655232 - Fap protein_coding retained_intron MGP_CASTEiJ_T0054872.1 MGP_CASTEiJ_G0024967.1 mouse_genomes_project 2 61625350 61666331 - Fap protein_coding retained_intron MGP_CASTEiJ_T0054873.1 MGP_CASTEiJ_G0024967.1 mouse_genomes_project 2 61639248 61665979 - MGP_CASTEiJ_P0054873 Fap protein_coding protein_coding MGP_CASTEiJ_T0013136.1 MGP_CASTEiJ_G0011299.1 mouse_genomes_project 2 53145438 53146252 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013056.1 MGP_CASTEiJ_G0011219.1 mouse_genomes_project 2 20351035 20351575 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056835.1 MGP_CASTEiJ_G0025535.1 mouse_genomes_project 2 121673335 121696661 + MGP_CASTEiJ_P0056835 Tyro3 protein_coding protein_coding MGP_CASTEiJ_T0056836.1 MGP_CASTEiJ_G0025535.1 mouse_genomes_project 2 121674831 121682726 + Tyro3 protein_coding processed_transcript MGP_CASTEiJ_T0056837.1 MGP_CASTEiJ_G0025535.1 mouse_genomes_project 2 121674919 121680419 + Tyro3 protein_coding processed_transcript MGP_CASTEiJ_T0056838.1 MGP_CASTEiJ_G0025535.1 mouse_genomes_project 2 121675106 121696661 + MGP_CASTEiJ_P0056838 Tyro3 protein_coding protein_coding MGP_CASTEiJ_T0056839.1 MGP_CASTEiJ_G0025535.1 mouse_genomes_project 2 121678192 121680377 + Tyro3 protein_coding processed_transcript MGP_CASTEiJ_T0056840.1 MGP_CASTEiJ_G0025535.1 mouse_genomes_project 2 121680170 121685062 + Tyro3 protein_coding retained_intron MGP_CASTEiJ_T0056841.1 MGP_CASTEiJ_G0025535.1 mouse_genomes_project 2 121686278 121696648 + Tyro3 protein_coding retained_intron MGP_CASTEiJ_T0056842.1 MGP_CASTEiJ_G0025535.1 mouse_genomes_project 2 121687920 121689466 + Tyro3 protein_coding retained_intron MGP_CASTEiJ_T0013112.1 MGP_CASTEiJ_G0011275.1 mouse_genomes_project 2 43335772 43338459 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003782.1 MGP_CASTEiJ_G0003390.1 mouse_genomes_project 2 15449905 15457047 + Gm13330 antisense antisense MGP_CASTEiJ_T0057419.1 MGP_CASTEiJ_G0025644.1 mouse_genomes_project 2 129876081 129895742 + MGP_CASTEiJ_P0057419 Mrps5 protein_coding protein_coding MGP_CASTEiJ_T0057420.1 MGP_CASTEiJ_G0025644.1 mouse_genomes_project 2 129876278 129884959 + Mrps5 protein_coding retained_intron MGP_CASTEiJ_T0057421.1 MGP_CASTEiJ_G0025644.1 mouse_genomes_project 2 129876278 129893434 + Mrps5 protein_coding retained_intron MGP_CASTEiJ_T0057422.1 MGP_CASTEiJ_G0025644.1 mouse_genomes_project 2 129879284 129884581 + MGP_CASTEiJ_P0057422 Mrps5 protein_coding protein_coding MGP_CASTEiJ_T0057423.1 MGP_CASTEiJ_G0025644.1 mouse_genomes_project 2 129884558 129887275 + Mrps5 protein_coding retained_intron MGP_CASTEiJ_T0057424.1 MGP_CASTEiJ_G0025644.1 mouse_genomes_project 2 129888726 129892764 + Mrps5 protein_coding retained_intron MGP_CASTEiJ_T0057425.1 MGP_CASTEiJ_G0025644.1 mouse_genomes_project 2 129888931 129890144 + Mrps5 protein_coding retained_intron MGP_CASTEiJ_T0003966.1 MGP_CASTEiJ_G0003524.1 mouse_genomes_project 2 135086786 135109352 + 1700026D11Rik antisense antisense MGP_CASTEiJ_T0003967.1 MGP_CASTEiJ_G0003524.1 mouse_genomes_project 2 135086868 135110936 + 1700026D11Rik antisense antisense MGP_CASTEiJ_T0003968.1 MGP_CASTEiJ_G0003524.1 mouse_genomes_project 2 135086868 135109393 + 1700026D11Rik antisense antisense MGP_CASTEiJ_T0003969.1 MGP_CASTEiJ_G0003524.1 mouse_genomes_project 2 135086880 135122321 + 1700026D11Rik antisense antisense MGP_CASTEiJ_T0003970.1 MGP_CASTEiJ_G0003524.1 mouse_genomes_project 2 135086896 135109353 + 1700026D11Rik antisense antisense MGP_CASTEiJ_T0003971.1 MGP_CASTEiJ_G0003524.1 mouse_genomes_project 2 135086896 135122198 + 1700026D11Rik antisense antisense MGP_CASTEiJ_T0007024.1 MGP_CASTEiJ_G0005775.1 mouse_genomes_project 2 59114271 59114995 + Gm13620 lincRNA lincRNA MGP_CASTEiJ_T0007117.1 MGP_CASTEiJ_G0005851.1 mouse_genomes_project 2 118602000 118614026 + D330050G23Rik lincRNA lincRNA MGP_CASTEiJ_T0007118.1 MGP_CASTEiJ_G0005851.1 mouse_genomes_project 2 118602023 118613863 + D330050G23Rik lincRNA lincRNA MGP_CASTEiJ_T0007119.1 MGP_CASTEiJ_G0005851.1 mouse_genomes_project 2 118602042 118605916 + D330050G23Rik lincRNA lincRNA MGP_CASTEiJ_T0053775.1 MGP_CASTEiJ_G0024776.1 mouse_genomes_project 2 28903903 28913541 - MGP_CASTEiJ_P0053775 BC005624 protein_coding unknown_likely_coding MGP_CASTEiJ_T0053776.1 MGP_CASTEiJ_G0024776.1 mouse_genomes_project 2 28903903 28913545 - MGP_CASTEiJ_P0053776 BC005624 protein_coding unknown_likely_coding MGP_CASTEiJ_T0053777.1 MGP_CASTEiJ_G0024776.1 mouse_genomes_project 2 28906704 28912164 - BC005624 protein_coding retained_intron MGP_CASTEiJ_T0053778.1 MGP_CASTEiJ_G0024776.1 mouse_genomes_project 2 28912587 28913885 - BC005624 protein_coding retained_intron MGP_CASTEiJ_T0102229.1 MGP_CASTEiJ_G0038954.1 mouse_genomes_project 2 86973430 86974372 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0017102.1 MGP_CASTEiJ_G0014776.1 mouse_genomes_project 2 122770236 122791531 + AV039307 processed_transcript processed_transcript MGP_CASTEiJ_T0017103.1 MGP_CASTEiJ_G0014776.1 mouse_genomes_project 2 122770248 122791665 + AV039307 processed_transcript processed_transcript MGP_CASTEiJ_T0017104.1 MGP_CASTEiJ_G0014776.1 mouse_genomes_project 2 122791208 122791532 + AV039307 processed_transcript processed_transcript MGP_CASTEiJ_T0013173.1 MGP_CASTEiJ_G0011336.1 mouse_genomes_project 2 68208547 68208935 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003814.1 MGP_CASTEiJ_G0003415.1 mouse_genomes_project 2 28072877 28074304 - 1700084E18Rik antisense antisense MGP_CASTEiJ_T0003815.1 MGP_CASTEiJ_G0003415.1 mouse_genomes_project 2 28073575 28074304 - 1700084E18Rik antisense pseudogene MGP_CASTEiJ_T0003863.1 MGP_CASTEiJ_G0003454.1 mouse_genomes_project 2 65421252 65426015 + Gm13618 antisense antisense MGP_CASTEiJ_T0058223.1 MGP_CASTEiJ_G0025837.1 mouse_genomes_project 2 155695885 155700350 - MGP_CASTEiJ_P0058223 Sox12 protein_coding protein_coding MGP_CASTEiJ_T0058224.1 MGP_CASTEiJ_G0025837.1 mouse_genomes_project 2 155695888 155700333 - MGP_CASTEiJ_P0058224 Sox12 protein_coding protein_coding MGP_CASTEiJ_T0013123.1 MGP_CASTEiJ_G0011286.1 mouse_genomes_project 2 48405332 48405810 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013326.1 MGP_CASTEiJ_G0011489.1 mouse_genomes_project 2 124553711 124554303 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099619.1 MGP_CASTEiJ_G0036532.1 mouse_genomes_project 2 4504769 4504866 + Gm24340 snRNA snRNA MGP_CASTEiJ_T0003801.1 MGP_CASTEiJ_G0003405.1 mouse_genomes_project 2 23809564 23812146 + Gm27196 antisense antisense MGP_CASTEiJ_T0053380.1 MGP_CASTEiJ_G0024714.1 mouse_genomes_project 2 25568598 25729162 + MGP_CASTEiJ_P0053380 Col5a1 protein_coding protein_coding MGP_CASTEiJ_T0053381.1 MGP_CASTEiJ_G0024714.1 mouse_genomes_project 2 25568989 25727901 + MGP_CASTEiJ_P0053381 Col5a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0053382.1 MGP_CASTEiJ_G0024714.1 mouse_genomes_project 2 25706125 25725759 + MGP_CASTEiJ_P0053382 Col5a1 protein_coding protein_coding MGP_CASTEiJ_T0013175.1 MGP_CASTEiJ_G0011338.1 mouse_genomes_project 2 69197152 69197584 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052441.1 MGP_CASTEiJ_G0024546.1 mouse_genomes_project 2 9362323 9566354 - MGP_CASTEiJ_P0052441 Itga8 protein_coding protein_coding MGP_CASTEiJ_T0052442.1 MGP_CASTEiJ_G0024546.1 mouse_genomes_project 2 9363169 9566324 - MGP_CASTEiJ_P0052442 Itga8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052443.1 MGP_CASTEiJ_G0024546.1 mouse_genomes_project 2 9364766 9387889 - MGP_CASTEiJ_P0052443 Itga8 protein_coding protein_coding MGP_CASTEiJ_T0052444.1 MGP_CASTEiJ_G0024546.1 mouse_genomes_project 2 9408825 9566205 - MGP_CASTEiJ_P0052444 Itga8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052445.1 MGP_CASTEiJ_G0024546.1 mouse_genomes_project 2 9435663 9446202 - Itga8 protein_coding retained_intron MGP_CASTEiJ_T0052446.1 MGP_CASTEiJ_G0024546.1 mouse_genomes_project 2 9477509 9502446 - Itga8 protein_coding processed_transcript MGP_CASTEiJ_T0052447.1 MGP_CASTEiJ_G0024546.1 mouse_genomes_project 2 9514737 9566354 - Itga8 protein_coding retained_intron MGP_CASTEiJ_T0052448.1 MGP_CASTEiJ_G0024546.1 mouse_genomes_project 2 9551397 9566020 - Itga8 protein_coding processed_transcript MGP_CASTEiJ_T0003792.1 MGP_CASTEiJ_G0003400.1 mouse_genomes_project 2 22825153 22832844 + Grin1os antisense antisense MGP_CASTEiJ_T0057426.1 MGP_CASTEiJ_G0025645.1 mouse_genomes_project 2 129923556 129946987 - MGP_CASTEiJ_P0057426 Mal protein_coding protein_coding MGP_CASTEiJ_T0057427.1 MGP_CASTEiJ_G0025645.1 mouse_genomes_project 2 129925204 129946511 - MGP_CASTEiJ_P0057427 Mal protein_coding protein_coding MGP_CASTEiJ_T0101574.1 MGP_CASTEiJ_G0038447.1 mouse_genomes_project 2 133269921 133270400 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0053268.1 MGP_CASTEiJ_G0024692.1 mouse_genomes_project 2 24291321 24294859 - MGP_CASTEiJ_P0053268 Lcn4 protein_coding protein_coding MGP_CASTEiJ_T0010067.1 MGP_CASTEiJ_G0008255.1 mouse_genomes_project 2 7741418 7741545 + Gm26398 miRNA miRNA MGP_CASTEiJ_T0007096.1 MGP_CASTEiJ_G0005833.1 mouse_genomes_project 2 105114393 105121347 + Gm13881 lincRNA lincRNA MGP_CASTEiJ_T0013430.1 MGP_CASTEiJ_G0011593.1 mouse_genomes_project 2 165271319 165271762 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059797.1 MGP_CASTEiJ_G0026195.1 mouse_genomes_project 2 184224889 184232194 - MGP_CASTEiJ_P0059797 Arfrp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059798.1 MGP_CASTEiJ_G0026195.1 mouse_genomes_project 2 184224945 184227207 - Arfrp1 protein_coding retained_intron MGP_CASTEiJ_T0059799.1 MGP_CASTEiJ_G0026195.1 mouse_genomes_project 2 184226381 184232186 - Arfrp1 protein_coding retained_intron MGP_CASTEiJ_T0059800.1 MGP_CASTEiJ_G0026195.1 mouse_genomes_project 2 184226494 184232172 - Arfrp1 protein_coding retained_intron MGP_CASTEiJ_T0059801.1 MGP_CASTEiJ_G0026195.1 mouse_genomes_project 2 184226540 184232188 - MGP_CASTEiJ_P0059801 Arfrp1 protein_coding protein_coding MGP_CASTEiJ_T0059802.1 MGP_CASTEiJ_G0026195.1 mouse_genomes_project 2 184226568 184231669 - Arfrp1 protein_coding retained_intron MGP_CASTEiJ_T0059803.1 MGP_CASTEiJ_G0026195.1 mouse_genomes_project 2 184226775 184232213 - Arfrp1 protein_coding retained_intron MGP_CASTEiJ_T0059804.1 MGP_CASTEiJ_G0026195.1 mouse_genomes_project 2 184226781 184232190 - MGP_CASTEiJ_P0059804 Arfrp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0059805.1 MGP_CASTEiJ_G0026195.1 mouse_genomes_project 2 184228515 184232119 - Arfrp1 protein_coding processed_transcript MGP_CASTEiJ_T0059806.1 MGP_CASTEiJ_G0026195.1 mouse_genomes_project 2 184231147 184232203 - Arfrp1 protein_coding retained_intron MGP_CASTEiJ_T0098583.1 MGP_CASTEiJ_G0035514.1 mouse_genomes_project 2 170468024 170468129 + Gm22687 rRNA rRNA MGP_CASTEiJ_T0007022.1 MGP_CASTEiJ_G0005773.1 mouse_genomes_project 2 54332913 54337259 - Gm26794 lincRNA lincRNA MGP_CASTEiJ_T0010050.1 MGP_CASTEiJ_G0008238.1 mouse_genomes_project 2 6423366 6423443 - Gm23963 miRNA miRNA MGP_CASTEiJ_T0006994.1 MGP_CASTEiJ_G0005751.1 mouse_genomes_project 2 32248138 32262076 - Gm38389 lincRNA lincRNA MGP_CASTEiJ_T0055175.1 MGP_CASTEiJ_G0025024.1 mouse_genomes_project 2 71637041 71927099 + MGP_CASTEiJ_P0055175 Rapgef4 protein_coding protein_coding MGP_CASTEiJ_T0055176.1 MGP_CASTEiJ_G0025024.1 mouse_genomes_project 2 71637048 71693341 + Rapgef4 protein_coding processed_transcript MGP_CASTEiJ_T0055177.1 MGP_CASTEiJ_G0025024.1 mouse_genomes_project 2 71637060 71808301 + Rapgef4 protein_coding processed_transcript MGP_CASTEiJ_T0055178.1 MGP_CASTEiJ_G0025024.1 mouse_genomes_project 2 71637088 71926000 + MGP_CASTEiJ_P0055178 Rapgef4 protein_coding protein_coding MGP_CASTEiJ_T0055179.1 MGP_CASTEiJ_G0025024.1 mouse_genomes_project 2 71719809 71927097 + MGP_CASTEiJ_P0055179 Rapgef4 protein_coding protein_coding MGP_CASTEiJ_T0055180.1 MGP_CASTEiJ_G0025024.1 mouse_genomes_project 2 71720195 71808476 + Rapgef4 protein_coding processed_transcript MGP_CASTEiJ_T0055181.1 MGP_CASTEiJ_G0025024.1 mouse_genomes_project 2 71807713 71866214 + Rapgef4 protein_coding processed_transcript MGP_CASTEiJ_T0055182.1 MGP_CASTEiJ_G0025024.1 mouse_genomes_project 2 71807730 71832318 + Rapgef4 protein_coding processed_transcript MGP_CASTEiJ_T0055183.1 MGP_CASTEiJ_G0025024.1 mouse_genomes_project 2 71848483 71927097 + Rapgef4 protein_coding processed_transcript MGP_CASTEiJ_T0055184.1 MGP_CASTEiJ_G0025024.1 mouse_genomes_project 2 71868759 71878343 + Rapgef4 protein_coding processed_transcript MGP_CASTEiJ_T0055185.1 MGP_CASTEiJ_G0025024.1 mouse_genomes_project 2 71912311 71926279 + Rapgef4 protein_coding processed_transcript MGP_CASTEiJ_T0054028.1 MGP_CASTEiJ_G0024811.1 mouse_genomes_project 2 30664353 30678987 + MGP_CASTEiJ_P0054028 Ak1 protein_coding protein_coding MGP_CASTEiJ_T0054029.1 MGP_CASTEiJ_G0024811.1 mouse_genomes_project 2 30668028 30678983 + MGP_CASTEiJ_P0054029 Ak1 protein_coding protein_coding MGP_CASTEiJ_T0054030.1 MGP_CASTEiJ_G0024811.1 mouse_genomes_project 2 30668029 30675092 + MGP_CASTEiJ_P0054030 Ak1 protein_coding protein_coding MGP_CASTEiJ_T0054031.1 MGP_CASTEiJ_G0024811.1 mouse_genomes_project 2 30670981 30675055 + MGP_CASTEiJ_P0054031 Ak1 protein_coding protein_coding MGP_CASTEiJ_T0054032.1 MGP_CASTEiJ_G0024811.1 mouse_genomes_project 2 30672095 30678981 + MGP_CASTEiJ_P0054032 Ak1 protein_coding protein_coding MGP_CASTEiJ_T0054033.1 MGP_CASTEiJ_G0024811.1 mouse_genomes_project 2 30672112 30677328 + Ak1 protein_coding retained_intron MGP_CASTEiJ_T0054587.1 MGP_CASTEiJ_G0024919.1 mouse_genomes_project 2 48173858 48271481 + MGP_CASTEiJ_P0054587 Epc2 protein_coding protein_coding MGP_CASTEiJ_T0054588.1 MGP_CASTEiJ_G0024919.1 mouse_genomes_project 2 48173985 48263808 + MGP_CASTEiJ_P0054588 Epc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0054589.1 MGP_CASTEiJ_G0024919.1 mouse_genomes_project 2 48248393 48256621 + MGP_CASTEiJ_P0054589 Epc2 protein_coding protein_coding MGP_CASTEiJ_T0006967.1 MGP_CASTEiJ_G0005731.1 mouse_genomes_project 2 21764641 21765174 + Gm13411 lincRNA lincRNA MGP_CASTEiJ_T0099661.1 MGP_CASTEiJ_G0036574.1 mouse_genomes_project 2 135634682 135634850 + Gm25704 snRNA snRNA MGP_CASTEiJ_T0013333.1 MGP_CASTEiJ_G0011496.1 mouse_genomes_project 2 130928827 130929101 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010151.1 MGP_CASTEiJ_G0008339.1 mouse_genomes_project 2 93586538 93586613 + Mir7222 miRNA miRNA MGP_CASTEiJ_T0059478.1 MGP_CASTEiJ_G0026123.1 mouse_genomes_project 2 177360151 177361920 + MGP_CASTEiJ_P0059478 Fam209 protein_coding protein_coding MGP_CASTEiJ_T0058815.1 MGP_CASTEiJ_G0025965.1 mouse_genomes_project 2 161707510 161741064 + MGP_CASTEiJ_P0058815 Vstm2l protein_coding protein_coding MGP_CASTEiJ_T0058816.1 MGP_CASTEiJ_G0025965.1 mouse_genomes_project 2 161707636 161740549 + MGP_CASTEiJ_P0058816 Vstm2l protein_coding unknown_likely_coding MGP_CASTEiJ_T0003822.1 MGP_CASTEiJ_G0003422.1 mouse_genomes_project 2 29958157 29959011 - Gm13442 antisense antisense MGP_CASTEiJ_T0055708.1 MGP_CASTEiJ_G0025201.1 mouse_genomes_project 2 88090563 88091482 - MGP_CASTEiJ_P0055708 protein_coding protein_coding MGP_CASTEiJ_T0100931.1 MGP_CASTEiJ_G0037844.1 mouse_genomes_project 2 171425177 171425270 + Gm25878 snoRNA snoRNA MGP_CASTEiJ_T0056233.1 MGP_CASTEiJ_G0025372.1 mouse_genomes_project 2 95528318 95552320 - MGP_CASTEiJ_P0056233 Api5 protein_coding protein_coding MGP_CASTEiJ_T0056234.1 MGP_CASTEiJ_G0025372.1 mouse_genomes_project 2 95532887 95552296 - Api5 protein_coding processed_transcript MGP_CASTEiJ_T0056235.1 MGP_CASTEiJ_G0025372.1 mouse_genomes_project 2 95536756 95552464 - Api5 protein_coding retained_intron MGP_CASTEiJ_T0056236.1 MGP_CASTEiJ_G0025372.1 mouse_genomes_project 2 95541503 95546322 - Api5 protein_coding processed_transcript MGP_CASTEiJ_T0054205.1 MGP_CASTEiJ_G0024837.1 mouse_genomes_project 2 32983936 33005596 - MGP_CASTEiJ_P0054205 Rabepk protein_coding protein_coding MGP_CASTEiJ_T0054206.1 MGP_CASTEiJ_G0024837.1 mouse_genomes_project 2 32983956 33005746 - MGP_CASTEiJ_P0054206 Rabepk protein_coding protein_coding MGP_CASTEiJ_T0054207.1 MGP_CASTEiJ_G0024837.1 mouse_genomes_project 2 32984147 33001314 - MGP_CASTEiJ_P0054207 Rabepk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054208.1 MGP_CASTEiJ_G0024837.1 mouse_genomes_project 2 32989226 33005842 - MGP_CASTEiJ_P0054208 Rabepk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054209.1 MGP_CASTEiJ_G0024837.1 mouse_genomes_project 2 32989620 33005879 - MGP_CASTEiJ_P0054209 Rabepk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0054210.1 MGP_CASTEiJ_G0024837.1 mouse_genomes_project 2 32990101 33005732 - Rabepk protein_coding retained_intron MGP_CASTEiJ_T0017042.1 MGP_CASTEiJ_G0014743.1 mouse_genomes_project 2 74523000 74533544 + Gm28309 processed_transcript processed_transcript MGP_CASTEiJ_T0058926.1 MGP_CASTEiJ_G0025989.1 mouse_genomes_project 2 164907384 165078364 - MGP_CASTEiJ_P0058926 Chd6 protein_coding protein_coding MGP_CASTEiJ_T0058927.1 MGP_CASTEiJ_G0025989.1 mouse_genomes_project 2 164920163 164923056 - Chd6 protein_coding processed_transcript MGP_CASTEiJ_T0058928.1 MGP_CASTEiJ_G0025989.1 mouse_genomes_project 2 164921489 164926321 - Chd6 protein_coding processed_transcript MGP_CASTEiJ_T0058929.1 MGP_CASTEiJ_G0025989.1 mouse_genomes_project 2 164943590 164948156 - Chd6 protein_coding retained_intron MGP_CASTEiJ_T0058930.1 MGP_CASTEiJ_G0025989.1 mouse_genomes_project 2 164946285 165078364 - MGP_CASTEiJ_P0058930 Chd6 protein_coding protein_coding MGP_CASTEiJ_T0058931.1 MGP_CASTEiJ_G0025989.1 mouse_genomes_project 2 164956703 164973434 - Chd6 protein_coding retained_intron MGP_CASTEiJ_T0058932.1 MGP_CASTEiJ_G0025989.1 mouse_genomes_project 2 164972974 165078417 - Chd6 protein_coding retained_intron MGP_CASTEiJ_T0058933.1 MGP_CASTEiJ_G0025989.1 mouse_genomes_project 2 164979045 164983199 - Chd6 protein_coding processed_transcript MGP_CASTEiJ_T0058934.1 MGP_CASTEiJ_G0025989.1 mouse_genomes_project 2 164990781 164994448 - Chd6 protein_coding processed_transcript MGP_CASTEiJ_T0058935.1 MGP_CASTEiJ_G0025989.1 mouse_genomes_project 2 164994738 165020249 - MGP_CASTEiJ_P0058935 Chd6 protein_coding protein_coding MGP_CASTEiJ_T0058936.1 MGP_CASTEiJ_G0025989.1 mouse_genomes_project 2 165000219 165078346 - Chd6 protein_coding retained_intron MGP_CASTEiJ_T0102206.1 MGP_CASTEiJ_G0038931.1 mouse_genomes_project 2 34758116 34758419 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0001036.1 MGP_CASTEiJ_G0000972.1 mouse_genomes_project 2 68270067 68273568 + TEC TEC MGP_CASTEiJ_T0052677.1 MGP_CASTEiJ_G0024584.1 mouse_genomes_project 2 18716024 18743553 - MGP_CASTEiJ_P0052677 Enkur protein_coding protein_coding MGP_CASTEiJ_T0052678.1 MGP_CASTEiJ_G0024584.1 mouse_genomes_project 2 18732286 18743427 - Enkur protein_coding processed_transcript MGP_CASTEiJ_T0052679.1 MGP_CASTEiJ_G0024584.1 mouse_genomes_project 2 18734628 18743540 - Enkur protein_coding processed_transcript MGP_CASTEiJ_T0007123.1 MGP_CASTEiJ_G0005855.1 mouse_genomes_project 2 119583210 119589430 - Gm13985 lincRNA lincRNA MGP_CASTEiJ_T0100883.1 MGP_CASTEiJ_G0037796.1 mouse_genomes_project 2 66744733 66744842 + Gm23328 snoRNA snoRNA MGP_CASTEiJ_T0059362.1 MGP_CASTEiJ_G0026091.1 mouse_genomes_project 2 171927782 171934024 + MGP_CASTEiJ_P0059362 Snai1 protein_coding protein_coding MGP_CASTEiJ_T0058424.1 MGP_CASTEiJ_G0025900.1 mouse_genomes_project 2 158142658 158143159 - MGP_CASTEiJ_P0058424 4930519P11Rik protein_coding protein_coding MGP_CASTEiJ_T0013105.1 MGP_CASTEiJ_G0011268.1 mouse_genomes_project 2 37959981 37960101 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001008.1 MGP_CASTEiJ_G0000944.1 mouse_genomes_project 2 12313408 12315310 + TEC TEC MGP_CASTEiJ_T0013053.1 MGP_CASTEiJ_G0011216.1 mouse_genomes_project 2 18974834 18975452 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017031.1 MGP_CASTEiJ_G0014735.1 mouse_genomes_project 2 56150250 56152535 - A930012O16Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017032.1 MGP_CASTEiJ_G0014735.1 mouse_genomes_project 2 56150250 56152535 - A930012O16Rik processed_transcript processed_transcript MGP_CASTEiJ_T0058708.1 MGP_CASTEiJ_G0025945.1 mouse_genomes_project 2 160283499 160445496 + MGP_CASTEiJ_P0058708 Dlgap4 protein_coding protein_coding MGP_CASTEiJ_T0058709.1 MGP_CASTEiJ_G0025945.1 mouse_genomes_project 2 160283499 160445498 + MGP_CASTEiJ_P0058709 Dlgap4 protein_coding protein_coding MGP_CASTEiJ_T0058710.1 MGP_CASTEiJ_G0025945.1 mouse_genomes_project 2 160375560 160444310 + MGP_CASTEiJ_P0058710 Dlgap4 protein_coding protein_coding MGP_CASTEiJ_T0058711.1 MGP_CASTEiJ_G0025945.1 mouse_genomes_project 2 160375560 160444305 + MGP_CASTEiJ_P0058711 Dlgap4 protein_coding protein_coding MGP_CASTEiJ_T0058712.1 MGP_CASTEiJ_G0025945.1 mouse_genomes_project 2 160398486 160430702 + MGP_CASTEiJ_P0058712 Dlgap4 protein_coding protein_coding MGP_CASTEiJ_T0058713.1 MGP_CASTEiJ_G0025945.1 mouse_genomes_project 2 160398960 160444086 + Dlgap4 protein_coding retained_intron MGP_CASTEiJ_T0058714.1 MGP_CASTEiJ_G0025945.1 mouse_genomes_project 2 160398971 160430943 + MGP_CASTEiJ_P0058714 Dlgap4 protein_coding protein_coding MGP_CASTEiJ_T0058715.1 MGP_CASTEiJ_G0025945.1 mouse_genomes_project 2 160398974 160430780 + MGP_CASTEiJ_P0058715 Dlgap4 protein_coding protein_coding MGP_CASTEiJ_T0058716.1 MGP_CASTEiJ_G0025945.1 mouse_genomes_project 2 160398976 160443975 + MGP_CASTEiJ_P0058716 Dlgap4 protein_coding protein_coding MGP_CASTEiJ_T0058717.1 MGP_CASTEiJ_G0025945.1 mouse_genomes_project 2 160398984 160444034 + MGP_CASTEiJ_P0058717 Dlgap4 protein_coding protein_coding MGP_CASTEiJ_T0058718.1 MGP_CASTEiJ_G0025945.1 mouse_genomes_project 2 160399400 160445498 + MGP_CASTEiJ_P0058718 Dlgap4 protein_coding protein_coding MGP_CASTEiJ_T0058719.1 MGP_CASTEiJ_G0025945.1 mouse_genomes_project 2 160429950 160445505 + MGP_CASTEiJ_P0058719 Dlgap4 protein_coding protein_coding MGP_CASTEiJ_T0058720.1 MGP_CASTEiJ_G0025945.1 mouse_genomes_project 2 160441079 160443910 + Dlgap4 protein_coding processed_transcript MGP_CASTEiJ_T0007060.1 MGP_CASTEiJ_G0005806.1 mouse_genomes_project 2 77853660 77857005 + Gm13661 lincRNA lincRNA MGP_CASTEiJ_T0003891.1 MGP_CASTEiJ_G0003473.1 mouse_genomes_project 2 74401565 74407983 + 4930445N08Rik antisense antisense MGP_CASTEiJ_T0057168.1 MGP_CASTEiJ_G0025585.1 mouse_genomes_project 2 124099341 124165378 - MGP_CASTEiJ_P0057168 Spg11 protein_coding protein_coding MGP_CASTEiJ_T0057169.1 MGP_CASTEiJ_G0025585.1 mouse_genomes_project 2 124140104 124165288 - Spg11 protein_coding processed_transcript MGP_CASTEiJ_T0057170.1 MGP_CASTEiJ_G0025585.1 mouse_genomes_project 2 124155023 124165367 - Spg11 protein_coding processed_transcript MGP_CASTEiJ_T0003977.1 MGP_CASTEiJ_G0003529.1 mouse_genomes_project 2 138868491 138871650 + Gm14218 antisense antisense MGP_CASTEiJ_T0013131.1 MGP_CASTEiJ_G0011294.1 mouse_genomes_project 2 50646516 50647178 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0056031.1 MGP_CASTEiJ_G0025339.1 mouse_genomes_project 2 92561940 92569456 - MGP_CASTEiJ_P0056031 Zfp408 protein_coding protein_coding MGP_CASTEiJ_T0056032.1 MGP_CASTEiJ_G0025339.1 mouse_genomes_project 2 92561958 92569468 - MGP_CASTEiJ_P0056032 Zfp408 protein_coding protein_coding MGP_CASTEiJ_T0056033.1 MGP_CASTEiJ_G0025339.1 mouse_genomes_project 2 92564613 92566568 - Zfp408 protein_coding retained_intron MGP_CASTEiJ_T0056034.1 MGP_CASTEiJ_G0025339.1 mouse_genomes_project 2 92566003 92569436 - MGP_CASTEiJ_P0056034 Zfp408 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0056035.1 MGP_CASTEiJ_G0025339.1 mouse_genomes_project 2 92566351 92569420 - Zfp408 protein_coding processed_transcript MGP_CASTEiJ_T0056036.1 MGP_CASTEiJ_G0025339.1 mouse_genomes_project 2 92568612 92569437 - Zfp408 protein_coding processed_transcript MGP_CASTEiJ_T0098752.1 MGP_CASTEiJ_G0035683.1 mouse_genomes_project 2 108177715 108177839 + Gm22813 scaRNA scaRNA MGP_CASTEiJ_T0013179.1 MGP_CASTEiJ_G0011342.1 mouse_genomes_project 2 71409269 71409799 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010150.1 MGP_CASTEiJ_G0008338.1 mouse_genomes_project 2 93584151 93584223 + Mir7221 miRNA miRNA MGP_CASTEiJ_T0000996.1 MGP_CASTEiJ_G0000932.1 mouse_genomes_project 2 10300981 10302594 + TEC TEC MGP_CASTEiJ_T0013269.1 MGP_CASTEiJ_G0011432.1 mouse_genomes_project 2 103289090 103289553 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017175.1 MGP_CASTEiJ_G0014809.1 mouse_genomes_project 2 177310789 177325354 - Gm14455 processed_transcript processed_transcript MGP_CASTEiJ_T0003775.1 MGP_CASTEiJ_G0003385.1 mouse_genomes_project 2 9565379 9575720 + E030013I19Rik antisense antisense MGP_CASTEiJ_T0003776.1 MGP_CASTEiJ_G0003385.1 mouse_genomes_project 2 9565750 9576733 + E030013I19Rik antisense antisense MGP_CASTEiJ_T0007122.1 MGP_CASTEiJ_G0005854.1 mouse_genomes_project 2 119577779 119579317 - Gm28183 lincRNA lincRNA MGP_CASTEiJ_T0053075.1 MGP_CASTEiJ_G0024655.1 mouse_genomes_project 2 23137806 23164965 - MGP_CASTEiJ_P0053075 Rabl6 protein_coding protein_coding MGP_CASTEiJ_T0053076.1 MGP_CASTEiJ_G0024655.1 mouse_genomes_project 2 23138900 23145170 - Rabl6 protein_coding processed_transcript MGP_CASTEiJ_T0053077.1 MGP_CASTEiJ_G0024655.1 mouse_genomes_project 2 23138900 23164909 - Rabl6 protein_coding processed_transcript MGP_CASTEiJ_T0053078.1 MGP_CASTEiJ_G0024655.1 mouse_genomes_project 2 23138924 23139854 - Rabl6 protein_coding processed_transcript MGP_CASTEiJ_T0053079.1 MGP_CASTEiJ_G0024655.1 mouse_genomes_project 2 23139982 23140617 - Rabl6 protein_coding processed_transcript MGP_CASTEiJ_T0053080.1 MGP_CASTEiJ_G0024655.1 mouse_genomes_project 2 23140467 23142115 - Rabl6 protein_coding processed_transcript MGP_CASTEiJ_T0053081.1 MGP_CASTEiJ_G0024655.1 mouse_genomes_project 2 23142252 23143967 - Rabl6 protein_coding processed_transcript MGP_CASTEiJ_T0053082.1 MGP_CASTEiJ_G0024655.1 mouse_genomes_project 2 23142334 23164929 - Rabl6 protein_coding processed_transcript MGP_CASTEiJ_T0053083.1 MGP_CASTEiJ_G0024655.1 mouse_genomes_project 2 23152972 23164900 - Rabl6 protein_coding processed_transcript MGP_CASTEiJ_T0055235.1 MGP_CASTEiJ_G0025036.1 mouse_genomes_project 2 73410206 73575085 - MGP_CASTEiJ_P0055235 Chn1 protein_coding protein_coding MGP_CASTEiJ_T0055236.1 MGP_CASTEiJ_G0025036.1 mouse_genomes_project 2 73410206 73575085 - MGP_CASTEiJ_P0055236 Chn1 protein_coding protein_coding MGP_CASTEiJ_T0055237.1 MGP_CASTEiJ_G0025036.1 mouse_genomes_project 2 73412567 73463850 - MGP_CASTEiJ_P0055237 Chn1 protein_coding protein_coding MGP_CASTEiJ_T0055238.1 MGP_CASTEiJ_G0025036.1 mouse_genomes_project 2 73412626 73520181 - MGP_CASTEiJ_P0055238 Chn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055239.1 MGP_CASTEiJ_G0025036.1 mouse_genomes_project 2 73426300 73458988 - MGP_CASTEiJ_P0055239 Chn1 protein_coding protein_coding MGP_CASTEiJ_T0055240.1 MGP_CASTEiJ_G0025036.1 mouse_genomes_project 2 73427017 73575065 - MGP_CASTEiJ_P0055240 Chn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0055241.1 MGP_CASTEiJ_G0025036.1 mouse_genomes_project 2 73481648 73574780 - MGP_CASTEiJ_P0055241 Chn1 protein_coding protein_coding MGP_CASTEiJ_T0001010.1 MGP_CASTEiJ_G0000946.1 mouse_genomes_project 2 12403894 12406301 - TEC TEC MGP_CASTEiJ_T0011158.1 MGP_CASTEiJ_G0009346.1 mouse_genomes_project 2 10526736 10526923 + Gm27540 misc_RNA misc_RNA MGP_CASTEiJ_T0010071.1 MGP_CASTEiJ_G0008259.1 mouse_genomes_project 2 7744942 7745048 + miRNA miRNA MGP_CASTEiJ_T0054446.1 MGP_CASTEiJ_G0024901.1 mouse_genomes_project 2 36999998 37219337 - MGP_CASTEiJ_P0054446 Nr6a1 protein_coding protein_coding MGP_CASTEiJ_T0054447.1 MGP_CASTEiJ_G0024901.1 mouse_genomes_project 2 37000002 37217884 - MGP_CASTEiJ_P0054447 Nr6a1 protein_coding protein_coding MGP_CASTEiJ_T0054448.1 MGP_CASTEiJ_G0024901.1 mouse_genomes_project 2 37000002 37066396 - MGP_CASTEiJ_P0054448 Nr6a1 protein_coding protein_coding MGP_CASTEiJ_T0054449.1 MGP_CASTEiJ_G0024901.1 mouse_genomes_project 2 37016784 37019653 - Nr6a1 protein_coding processed_transcript MGP_CASTEiJ_T0054450.1 MGP_CASTEiJ_G0024901.1 mouse_genomes_project 2 37017914 37022146 - Nr6a1 protein_coding processed_transcript MGP_CASTEiJ_T0054451.1 MGP_CASTEiJ_G0024901.1 mouse_genomes_project 2 37018322 37066401 - MGP_CASTEiJ_P0054451 Nr6a1 protein_coding protein_coding MGP_CASTEiJ_T0054452.1 MGP_CASTEiJ_G0024901.1 mouse_genomes_project 2 37019612 37066992 - Nr6a1 protein_coding processed_transcript MGP_CASTEiJ_T0054453.1 MGP_CASTEiJ_G0024901.1 mouse_genomes_project 2 37019731 37217942 - MGP_CASTEiJ_P0054453 Nr6a1 protein_coding protein_coding MGP_CASTEiJ_T0054454.1 MGP_CASTEiJ_G0024901.1 mouse_genomes_project 2 37021629 37066350 - Nr6a1 protein_coding processed_transcript MGP_CASTEiJ_T0054455.1 MGP_CASTEiJ_G0024901.1 mouse_genomes_project 2 37022145 37044766 - Nr6a1 protein_coding retained_intron MGP_CASTEiJ_T0054456.1 MGP_CASTEiJ_G0024901.1 mouse_genomes_project 2 37063805 37066350 - Nr6a1 protein_coding processed_transcript MGP_CASTEiJ_T0007227.1 MGP_CASTEiJ_G0005941.1 mouse_genomes_project 2 173691312 173695242 + Gm14258 lincRNA lincRNA MGP_CASTEiJ_T0013526.1 MGP_CASTEiJ_G0011689.1 mouse_genomes_project 3 18048236 18048446 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001300.1 MGP_CASTEiJ_G0001230.1 mouse_genomes_project 3 132571669 132574095 - TEC TEC MGP_CASTEiJ_T0013547.1 MGP_CASTEiJ_G0011710.1 mouse_genomes_project 3 28332955 28333223 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013680.1 MGP_CASTEiJ_G0011843.1 mouse_genomes_project 3 71585044 71585562 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013511.1 MGP_CASTEiJ_G0011674.1 mouse_genomes_project 3 14461958 14462292 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001160.1 MGP_CASTEiJ_G0001091.1 mouse_genomes_project 3 51463356 51467534 + TEC TEC MGP_CASTEiJ_T0102296.1 MGP_CASTEiJ_G0039021.1 mouse_genomes_project 3 108308628 108312536 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0061699.1 MGP_CASTEiJ_G0026579.1 mouse_genomes_project 3 89044867 89056982 + MGP_CASTEiJ_P0061699 Clk2 protein_coding protein_coding MGP_CASTEiJ_T0061700.1 MGP_CASTEiJ_G0026579.1 mouse_genomes_project 3 89044889 89047277 + MGP_CASTEiJ_P0061700 Clk2 protein_coding protein_coding MGP_CASTEiJ_T0061701.1 MGP_CASTEiJ_G0026579.1 mouse_genomes_project 3 89044890 89056982 + MGP_CASTEiJ_P0061701 Clk2 protein_coding protein_coding MGP_CASTEiJ_T0061702.1 MGP_CASTEiJ_G0026579.1 mouse_genomes_project 3 89044891 89056980 + Clk2 protein_coding retained_intron MGP_CASTEiJ_T0061703.1 MGP_CASTEiJ_G0026579.1 mouse_genomes_project 3 89044891 89053528 + MGP_CASTEiJ_P0061703 Clk2 protein_coding protein_coding MGP_CASTEiJ_T0061704.1 MGP_CASTEiJ_G0026579.1 mouse_genomes_project 3 89044912 89056982 + MGP_CASTEiJ_P0061704 Clk2 protein_coding protein_coding MGP_CASTEiJ_T0061705.1 MGP_CASTEiJ_G0026579.1 mouse_genomes_project 3 89045051 89056982 + MGP_CASTEiJ_P0061705 Clk2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061706.1 MGP_CASTEiJ_G0026579.1 mouse_genomes_project 3 89047236 89050465 + Clk2 protein_coding retained_intron MGP_CASTEiJ_T0061707.1 MGP_CASTEiJ_G0026579.1 mouse_genomes_project 3 89052237 89056141 + Clk2 protein_coding retained_intron MGP_CASTEiJ_T0061708.1 MGP_CASTEiJ_G0026579.1 mouse_genomes_project 3 89054025 89055808 + Clk2 protein_coding retained_intron MGP_CASTEiJ_T0061709.1 MGP_CASTEiJ_G0026579.1 mouse_genomes_project 3 89055106 89056032 + Clk2 protein_coding processed_transcript MGP_CASTEiJ_T0001070.1 MGP_CASTEiJ_G0001003.1 mouse_genomes_project 3 15832359 15836312 + TEC TEC MGP_CASTEiJ_T0064421.1 MGP_CASTEiJ_G0027161.1 mouse_genomes_project 3 157929324 157937963 - MGP_CASTEiJ_P0064421 Fpgt protein_coding protein_coding MGP_CASTEiJ_T0064422.1 MGP_CASTEiJ_G0027161.1 mouse_genomes_project 3 157932125 157937757 - Fpgt protein_coding processed_transcript MGP_CASTEiJ_T0064423.1 MGP_CASTEiJ_G0027161.1 mouse_genomes_project 3 157933447 157934944 - Fpgt protein_coding retained_intron MGP_CASTEiJ_T0064424.1 MGP_CASTEiJ_G0027161.1 mouse_genomes_project 3 157935383 157937928 - Fpgt protein_coding retained_intron MGP_CASTEiJ_T0064425.1 MGP_CASTEiJ_G0027161.1 mouse_genomes_project 3 157935760 157936984 - Fpgt protein_coding processed_transcript MGP_CASTEiJ_T0064426.1 MGP_CASTEiJ_G0027161.1 mouse_genomes_project 3 157935845 157937787 - Fpgt protein_coding processed_transcript MGP_CASTEiJ_T0013660.1 MGP_CASTEiJ_G0011823.1 mouse_genomes_project 3 65655866 65660502 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007534.1 MGP_CASTEiJ_G0006179.1 mouse_genomes_project 3 139670147 139670579 - Gm43689 lincRNA lincRNA MGP_CASTEiJ_T0061710.1 MGP_CASTEiJ_G0026580.1 mouse_genomes_project 3 89057537 89062883 + MGP_CASTEiJ_P0061710 Scamp3 protein_coding protein_coding MGP_CASTEiJ_T0061711.1 MGP_CASTEiJ_G0026580.1 mouse_genomes_project 3 89057554 89062883 + MGP_CASTEiJ_P0061711 Scamp3 protein_coding protein_coding MGP_CASTEiJ_T0061712.1 MGP_CASTEiJ_G0026580.1 mouse_genomes_project 3 89057560 89059736 + Scamp3 protein_coding retained_intron MGP_CASTEiJ_T0061713.1 MGP_CASTEiJ_G0026580.1 mouse_genomes_project 3 89057584 89062881 + MGP_CASTEiJ_P0061713 Scamp3 protein_coding protein_coding MGP_CASTEiJ_T0061714.1 MGP_CASTEiJ_G0026580.1 mouse_genomes_project 3 89057595 89059523 + Scamp3 protein_coding retained_intron MGP_CASTEiJ_T0061715.1 MGP_CASTEiJ_G0026580.1 mouse_genomes_project 3 89057601 89059735 + Scamp3 protein_coding retained_intron MGP_CASTEiJ_T0061716.1 MGP_CASTEiJ_G0026580.1 mouse_genomes_project 3 89057685 89061392 + Scamp3 protein_coding retained_intron MGP_CASTEiJ_T0061717.1 MGP_CASTEiJ_G0026580.1 mouse_genomes_project 3 89057822 89060456 + Scamp3 protein_coding retained_intron MGP_CASTEiJ_T0060293.1 MGP_CASTEiJ_G0026298.1 mouse_genomes_project 3 28507390 28565796 + MGP_CASTEiJ_P0060293 Prkci protein_coding protein_coding MGP_CASTEiJ_T0060294.1 MGP_CASTEiJ_G0026298.1 mouse_genomes_project 3 28516933 28545869 + MGP_CASTEiJ_P0060294 Prkci protein_coding protein_coding MGP_CASTEiJ_T0060295.1 MGP_CASTEiJ_G0026298.1 mouse_genomes_project 3 28543077 28551632 + Prkci protein_coding processed_transcript MGP_CASTEiJ_T0060296.1 MGP_CASTEiJ_G0026298.1 mouse_genomes_project 3 28550684 28553458 + MGP_CASTEiJ_P0060296 Prkci protein_coding protein_coding MGP_CASTEiJ_T0060297.1 MGP_CASTEiJ_G0026298.1 mouse_genomes_project 3 28550749 28552205 + Prkci protein_coding retained_intron MGP_CASTEiJ_T0004177.1 MGP_CASTEiJ_G0003674.1 mouse_genomes_project 3 96098112 96101096 - Gm15441 antisense antisense MGP_CASTEiJ_T0004178.1 MGP_CASTEiJ_G0003674.1 mouse_genomes_project 3 96098135 96110091 - Gm15441 antisense antisense MGP_CASTEiJ_T0100951.1 MGP_CASTEiJ_G0037864.1 mouse_genomes_project 3 39216044 39216169 - Gm25487 snoRNA snoRNA MGP_CASTEiJ_T0061527.1 MGP_CASTEiJ_G0026552.1 mouse_genomes_project 3 88077508 88083216 - MGP_CASTEiJ_P0061527 Tmem79 protein_coding protein_coding MGP_CASTEiJ_T0061528.1 MGP_CASTEiJ_G0026552.1 mouse_genomes_project 3 88077899 88082980 - MGP_CASTEiJ_P0061528 Tmem79 protein_coding protein_coding MGP_CASTEiJ_T0061529.1 MGP_CASTEiJ_G0026552.1 mouse_genomes_project 3 88077900 88083166 - MGP_CASTEiJ_P0061529 Tmem79 protein_coding protein_coding MGP_CASTEiJ_T0061530.1 MGP_CASTEiJ_G0026552.1 mouse_genomes_project 3 88081849 88084824 - MGP_CASTEiJ_P0061530 Tmem79 protein_coding protein_coding MGP_CASTEiJ_T0007503.1 MGP_CASTEiJ_G0006150.1 mouse_genomes_project 3 129112871 129116507 + Gm42586 lincRNA lincRNA MGP_CASTEiJ_T0063056.1 MGP_CASTEiJ_G0026911.1 mouse_genomes_project 3 107978468 107980225 + MGP_CASTEiJ_P0063056 Gm10961 protein_coding protein_coding MGP_CASTEiJ_T0001334.1 MGP_CASTEiJ_G0001264.1 mouse_genomes_project 3 156203208 156204119 - TEC TEC MGP_CASTEiJ_T0013563.1 MGP_CASTEiJ_G0011726.1 mouse_genomes_project 3 34386388 34386640 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060310.1 MGP_CASTEiJ_G0026303.1 mouse_genomes_project 3 29850167 29887549 - MGP_CASTEiJ_P0060310 Zmat3 protein_coding protein_coding MGP_CASTEiJ_T0060311.1 MGP_CASTEiJ_G0026303.1 mouse_genomes_project 3 29850171 29887491 - MGP_CASTEiJ_P0060311 Zmat3 protein_coding protein_coding MGP_CASTEiJ_T0060312.1 MGP_CASTEiJ_G0026303.1 mouse_genomes_project 3 29880762 29887331 - MGP_CASTEiJ_P0060312 Zmat3 protein_coding protein_coding MGP_CASTEiJ_T0060313.1 MGP_CASTEiJ_G0026303.1 mouse_genomes_project 3 29884083 29887875 - Zmat3 protein_coding retained_intron MGP_CASTEiJ_T0061502.1 MGP_CASTEiJ_G0026547.1 mouse_genomes_project 3 87983929 87995640 - MGP_CASTEiJ_P0061502 Rhbg protein_coding protein_coding MGP_CASTEiJ_T0099753.1 MGP_CASTEiJ_G0036666.1 mouse_genomes_project 3 134493356 134493463 + Gm23196 snRNA snRNA MGP_CASTEiJ_T0059950.1 MGP_CASTEiJ_G0026221.1 mouse_genomes_project 3 4692979 4740970 + MGP_CASTEiJ_P0059950 Zc2hc1a protein_coding protein_coding MGP_CASTEiJ_T0059951.1 MGP_CASTEiJ_G0026221.1 mouse_genomes_project 3 4692982 4739207 + MGP_CASTEiJ_P0059951 Zc2hc1a protein_coding protein_coding MGP_CASTEiJ_T0059952.1 MGP_CASTEiJ_G0026221.1 mouse_genomes_project 3 4729468 4738631 + Zc2hc1a protein_coding retained_intron MGP_CASTEiJ_T0001340.1 MGP_CASTEiJ_G0001270.1 mouse_genomes_project 3 159605740 159607107 + TEC TEC MGP_CASTEiJ_T0013766.1 MGP_CASTEiJ_G0011929.1 mouse_genomes_project 3 100698270 100698778 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101011.1 MGP_CASTEiJ_G0037924.1 mouse_genomes_project 3 160119174 160119306 + Gm24373 snoRNA snoRNA MGP_CASTEiJ_T0063930.1 MGP_CASTEiJ_G0027074.1 mouse_genomes_project 3 139670639 139680344 + MGP_CASTEiJ_P0063930 Lamtor3 protein_coding protein_coding MGP_CASTEiJ_T0063931.1 MGP_CASTEiJ_G0027074.1 mouse_genomes_project 3 139670659 139671657 + Lamtor3 protein_coding retained_intron MGP_CASTEiJ_T0063932.1 MGP_CASTEiJ_G0027074.1 mouse_genomes_project 3 139670659 139680885 + MGP_CASTEiJ_P0063932 Lamtor3 protein_coding protein_coding MGP_CASTEiJ_T0063934.1 MGP_CASTEiJ_G0027074.1 mouse_genomes_project 3 139670695 139680365 + Lamtor3 protein_coding processed_transcript MGP_CASTEiJ_T0063935.1 MGP_CASTEiJ_G0027074.1 mouse_genomes_project 3 139670705 139678939 + MGP_CASTEiJ_P0063935 Lamtor3 protein_coding protein_coding MGP_CASTEiJ_T0063936.1 MGP_CASTEiJ_G0027074.1 mouse_genomes_project 3 139670986 139679224 + Lamtor3 protein_coding retained_intron MGP_CASTEiJ_T0063937.1 MGP_CASTEiJ_G0027074.1 mouse_genomes_project 3 139676909 139680280 + Lamtor3 protein_coding retained_intron MGP_CASTEiJ_T0063938.1 MGP_CASTEiJ_G0027074.1 mouse_genomes_project 3 139678299 139681020 + Lamtor3 protein_coding retained_intron MGP_CASTEiJ_T0064367.1 MGP_CASTEiJ_G0027153.1 mouse_genomes_project 3 156677328 156682359 - MGP_CASTEiJ_P0064367 Rabggtb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064368.1 MGP_CASTEiJ_G0027153.1 mouse_genomes_project 3 156677330 156683046 - MGP_CASTEiJ_P0064368 Rabggtb protein_coding protein_coding MGP_CASTEiJ_T0064369.1 MGP_CASTEiJ_G0027153.1 mouse_genomes_project 3 156677330 156682200 - MGP_CASTEiJ_P0064369 Rabggtb protein_coding protein_coding MGP_CASTEiJ_T0064370.1 MGP_CASTEiJ_G0027153.1 mouse_genomes_project 3 156677332 156682964 - MGP_CASTEiJ_P0064370 Rabggtb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064371.1 MGP_CASTEiJ_G0027153.1 mouse_genomes_project 3 156677334 156683030 - MGP_CASTEiJ_P0064371 Rabggtb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064372.1 MGP_CASTEiJ_G0027153.1 mouse_genomes_project 3 156677497 156682136 - MGP_CASTEiJ_P0064372 Rabggtb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064373.1 MGP_CASTEiJ_G0027153.1 mouse_genomes_project 3 156677615 156682136 - MGP_CASTEiJ_P0064373 Rabggtb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064374.1 MGP_CASTEiJ_G0027153.1 mouse_genomes_project 3 156677615 156682136 - MGP_CASTEiJ_P0064374 Rabggtb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064375.1 MGP_CASTEiJ_G0027153.1 mouse_genomes_project 3 156677615 156682136 - MGP_CASTEiJ_P0064375 Rabggtb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064376.1 MGP_CASTEiJ_G0027153.1 mouse_genomes_project 3 156678115 156682084 - MGP_CASTEiJ_P0064376 Rabggtb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064377.1 MGP_CASTEiJ_G0027153.1 mouse_genomes_project 3 156679453 156682992 - MGP_CASTEiJ_P0064377 Rabggtb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064378.1 MGP_CASTEiJ_G0027153.1 mouse_genomes_project 3 156679625 156682973 - MGP_CASTEiJ_P0064378 Rabggtb protein_coding unknown_likely_coding MGP_CASTEiJ_T0064379.1 MGP_CASTEiJ_G0027153.1 mouse_genomes_project 3 156682036 156682968 - Rabggtb protein_coding processed_transcript MGP_CASTEiJ_T0007311.1 MGP_CASTEiJ_G0006006.1 mouse_genomes_project 3 32183459 32187255 - Gm43207 lincRNA lincRNA MGP_CASTEiJ_T0013662.1 MGP_CASTEiJ_G0011825.1 mouse_genomes_project 3 66405907 66406855 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007535.1 MGP_CASTEiJ_G0006180.1 mouse_genomes_project 3 139761277 139779966 + Gm19708 lincRNA lincRNA MGP_CASTEiJ_T0061598.1 MGP_CASTEiJ_G0026564.1 mouse_genomes_project 3 88367432 88374729 + MGP_CASTEiJ_P0061598 Ssr2 protein_coding protein_coding MGP_CASTEiJ_T0061599.1 MGP_CASTEiJ_G0026564.1 mouse_genomes_project 3 88367465 88374329 + MGP_CASTEiJ_P0061599 Ssr2 protein_coding protein_coding MGP_CASTEiJ_T0061600.1 MGP_CASTEiJ_G0026564.1 mouse_genomes_project 3 88367491 88374343 + MGP_CASTEiJ_P0061600 Ssr2 protein_coding protein_coding MGP_CASTEiJ_T0061601.1 MGP_CASTEiJ_G0026564.1 mouse_genomes_project 3 88367495 88374729 + MGP_CASTEiJ_P0061601 Ssr2 protein_coding protein_coding MGP_CASTEiJ_T0007520.1 MGP_CASTEiJ_G0006165.1 mouse_genomes_project 3 134878408 134880891 - Gm43254 lincRNA lincRNA MGP_CASTEiJ_T0007462.1 MGP_CASTEiJ_G0006120.1 mouse_genomes_project 3 104612125 104614931 - Gm29561 lincRNA lincRNA MGP_CASTEiJ_T0001269.1 MGP_CASTEiJ_G0001200.1 mouse_genomes_project 3 127778680 127782244 + TEC TEC MGP_CASTEiJ_T0007433.1 MGP_CASTEiJ_G0006094.1 mouse_genomes_project 3 94161771 94163227 + lincRNA lincRNA MGP_CASTEiJ_T0013599.1 MGP_CASTEiJ_G0011762.1 mouse_genomes_project 3 47750811 47751368 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007518.1 MGP_CASTEiJ_G0006163.1 mouse_genomes_project 3 133974168 133977893 - lincRNA lincRNA MGP_CASTEiJ_T0062593.1 MGP_CASTEiJ_G0026798.1 mouse_genomes_project 3 96801593 96825329 - MGP_CASTEiJ_P0062593 Bcl9 protein_coding protein_coding MGP_CASTEiJ_T0062594.1 MGP_CASTEiJ_G0026798.1 mouse_genomes_project 3 96802563 96814444 - MGP_CASTEiJ_P0062594 Bcl9 protein_coding protein_coding MGP_CASTEiJ_T0062595.1 MGP_CASTEiJ_G0026798.1 mouse_genomes_project 3 96808400 96811948 - Bcl9 protein_coding processed_transcript MGP_CASTEiJ_T0062596.1 MGP_CASTEiJ_G0026798.1 mouse_genomes_project 3 96812422 96826099 - Bcl9 protein_coding retained_intron MGP_CASTEiJ_T0062597.1 MGP_CASTEiJ_G0026798.1 mouse_genomes_project 3 96814464 96826615 - Bcl9 protein_coding processed_transcript MGP_CASTEiJ_T0062598.1 MGP_CASTEiJ_G0026798.1 mouse_genomes_project 3 96814489 96895586 - Bcl9 protein_coding processed_transcript MGP_CASTEiJ_T0062599.1 MGP_CASTEiJ_G0026798.1 mouse_genomes_project 3 96814489 96821938 - Bcl9 protein_coding processed_transcript MGP_CASTEiJ_T0062600.1 MGP_CASTEiJ_G0026798.1 mouse_genomes_project 3 96819785 96822170 - Bcl9 protein_coding retained_intron MGP_CASTEiJ_T0061023.1 MGP_CASTEiJ_G0026438.1 mouse_genomes_project 3 64743949 64755957 - Ccnl1 protein_coding retained_intron MGP_CASTEiJ_T0061024.1 MGP_CASTEiJ_G0026438.1 mouse_genomes_project 3 64743949 64756007 - MGP_CASTEiJ_P0061024 Ccnl1 protein_coding protein_coding MGP_CASTEiJ_T0061025.1 MGP_CASTEiJ_G0026438.1 mouse_genomes_project 3 64743993 64755793 - MGP_CASTEiJ_P0061025 Ccnl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061026.1 MGP_CASTEiJ_G0026438.1 mouse_genomes_project 3 64744307 64755921 - Ccnl1 protein_coding retained_intron MGP_CASTEiJ_T0061027.1 MGP_CASTEiJ_G0026438.1 mouse_genomes_project 3 64744573 64745765 - Ccnl1 protein_coding retained_intron MGP_CASTEiJ_T0061028.1 MGP_CASTEiJ_G0026438.1 mouse_genomes_project 3 64745720 64754620 - MGP_CASTEiJ_P0061028 Ccnl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061029.1 MGP_CASTEiJ_G0026438.1 mouse_genomes_project 3 64746274 64748742 - Ccnl1 protein_coding retained_intron MGP_CASTEiJ_T0061030.1 MGP_CASTEiJ_G0026438.1 mouse_genomes_project 3 64746658 64755939 - Ccnl1 protein_coding retained_intron MGP_CASTEiJ_T0061031.1 MGP_CASTEiJ_G0026438.1 mouse_genomes_project 3 64747667 64754653 - MGP_CASTEiJ_P0061031 Ccnl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061032.1 MGP_CASTEiJ_G0026438.1 mouse_genomes_project 3 64748166 64755994 - MGP_CASTEiJ_P0061032 Ccnl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0061033.1 MGP_CASTEiJ_G0026438.1 mouse_genomes_project 3 64748170 64749632 - Ccnl1 protein_coding retained_intron MGP_CASTEiJ_T0061034.1 MGP_CASTEiJ_G0026438.1 mouse_genomes_project 3 64749012 64750757 - Ccnl1 protein_coding retained_intron MGP_CASTEiJ_T0061035.1 MGP_CASTEiJ_G0026438.1 mouse_genomes_project 3 64749197 64755417 - Ccnl1 protein_coding retained_intron MGP_CASTEiJ_T0061036.1 MGP_CASTEiJ_G0026438.1 mouse_genomes_project 3 64753007 64756076 - MGP_CASTEiJ_P0061036 Ccnl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064153.1 MGP_CASTEiJ_G0027120.1 mouse_genomes_project 3 148361529 148420653 - MGP_CASTEiJ_P0064153 Wdr63 protein_coding protein_coding MGP_CASTEiJ_T0064154.1 MGP_CASTEiJ_G0027120.1 mouse_genomes_project 3 148361530 148398443 - MGP_CASTEiJ_P0064154 Wdr63 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064155.1 MGP_CASTEiJ_G0027120.1 mouse_genomes_project 3 148361531 148368121 - Wdr63 protein_coding processed_transcript MGP_CASTEiJ_T0064156.1 MGP_CASTEiJ_G0027120.1 mouse_genomes_project 3 148363748 148369379 - Wdr63 protein_coding processed_transcript MGP_CASTEiJ_T0013813.1 MGP_CASTEiJ_G0011976.1 mouse_genomes_project 3 115670076 115670495 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064394.1 MGP_CASTEiJ_G0027156.1 mouse_genomes_project 3 157112278 157137780 - MGP_CASTEiJ_P0064394 Lhx8 protein_coding protein_coding MGP_CASTEiJ_T0064395.1 MGP_CASTEiJ_G0027156.1 mouse_genomes_project 3 157112280 157137180 - MGP_CASTEiJ_P0064395 Lhx8 protein_coding protein_coding MGP_CASTEiJ_T0064396.1 MGP_CASTEiJ_G0027156.1 mouse_genomes_project 3 157112962 157135287 - MGP_CASTEiJ_P0064396 Lhx8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064397.1 MGP_CASTEiJ_G0027156.1 mouse_genomes_project 3 157123760 157131924 - Lhx8 protein_coding retained_intron MGP_CASTEiJ_T0064398.1 MGP_CASTEiJ_G0027156.1 mouse_genomes_project 3 157129298 157135755 - MGP_CASTEiJ_P0064398 Lhx8 protein_coding protein_coding MGP_CASTEiJ_T0063818.1 MGP_CASTEiJ_G0027056.1 mouse_genomes_project 3 135827997 135852937 + protein_coding processed_transcript MGP_CASTEiJ_T0063819.1 MGP_CASTEiJ_G0027056.1 mouse_genomes_project 3 135828004 135855482 + MGP_CASTEiJ_P0063819 protein_coding protein_coding MGP_CASTEiJ_T0063820.1 MGP_CASTEiJ_G0027056.1 mouse_genomes_project 3 135828008 135829897 + protein_coding retained_intron MGP_CASTEiJ_T0063821.1 MGP_CASTEiJ_G0027056.1 mouse_genomes_project 3 135828332 135851551 + MGP_CASTEiJ_P0063821 protein_coding protein_coding MGP_CASTEiJ_T0063822.1 MGP_CASTEiJ_G0027056.1 mouse_genomes_project 3 135832098 135838425 + protein_coding retained_intron MGP_CASTEiJ_T0017203.1 MGP_CASTEiJ_G0014817.1 mouse_genomes_project 3 43187180 43289009 - processed_transcript lincRNA MGP_CASTEiJ_T0017204.1 MGP_CASTEiJ_G0014817.1 mouse_genomes_project 3 43188094 43271828 - processed_transcript lincRNA MGP_CASTEiJ_T0017205.1 MGP_CASTEiJ_G0014817.1 mouse_genomes_project 3 43236722 43288954 - processed_transcript retained_intron MGP_CASTEiJ_T0061471.1 MGP_CASTEiJ_G0026540.1 mouse_genomes_project 3 87710611 87723493 - MGP_CASTEiJ_P0061471 Bcan protein_coding protein_coding MGP_CASTEiJ_T0061472.1 MGP_CASTEiJ_G0026540.1 mouse_genomes_project 3 87715597 87720956 - Bcan protein_coding retained_intron MGP_CASTEiJ_T0061473.1 MGP_CASTEiJ_G0026540.1 mouse_genomes_project 3 87715597 87717540 - Bcan protein_coding retained_intron MGP_CASTEiJ_T0061474.1 MGP_CASTEiJ_G0026540.1 mouse_genomes_project 3 87716677 87719466 - Bcan protein_coding retained_intron MGP_CASTEiJ_T0061475.1 MGP_CASTEiJ_G0026540.1 mouse_genomes_project 3 87719545 87720366 - Bcan protein_coding retained_intron MGP_CASTEiJ_T0061476.1 MGP_CASTEiJ_G0026540.1 mouse_genomes_project 3 87720233 87722897 - MGP_CASTEiJ_P0061476 Bcan protein_coding protein_coding MGP_CASTEiJ_T0013555.1 MGP_CASTEiJ_G0011718.1 mouse_genomes_project 3 33147562 33148489 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0059946.1 MGP_CASTEiJ_G0026219.1 mouse_genomes_project 3 3809547 3816656 - MGP_CASTEiJ_P0059946 1700008P02Rik protein_coding protein_coding MGP_CASTEiJ_T0061060.1 MGP_CASTEiJ_G0026444.1 mouse_genomes_project 3 66205819 66253199 + MGP_CASTEiJ_P0061060 Gfm1 protein_coding protein_coding MGP_CASTEiJ_T0061061.1 MGP_CASTEiJ_G0026444.1 mouse_genomes_project 3 66205839 66234653 + Gfm1 protein_coding processed_transcript MGP_CASTEiJ_T0061062.1 MGP_CASTEiJ_G0026444.1 mouse_genomes_project 3 66205962 66233902 + MGP_CASTEiJ_P0061062 Gfm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0061063.1 MGP_CASTEiJ_G0026444.1 mouse_genomes_project 3 66232331 66251481 + Gfm1 protein_coding retained_intron MGP_CASTEiJ_T0001106.1 MGP_CASTEiJ_G0001039.1 mouse_genomes_project 3 35214212 35220180 + TEC TEC MGP_CASTEiJ_T0001059.1 MGP_CASTEiJ_G0000993.1 mouse_genomes_project 3 325868 325995 + TEC TEC MGP_CASTEiJ_T0061135.1 MGP_CASTEiJ_G0026463.1 mouse_genomes_project 3 68873950 68901887 + MGP_CASTEiJ_P0061135 Otol1 protein_coding protein_coding MGP_CASTEiJ_T0013483.1 MGP_CASTEiJ_G0011646.1 mouse_genomes_project 3 6374021 6374466 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004240.1 MGP_CASTEiJ_G0003712.1 mouse_genomes_project 3 128774215 128775550 - Gm43729 antisense antisense MGP_CASTEiJ_T0001265.1 MGP_CASTEiJ_G0001196.1 mouse_genomes_project 3 126263768 126266246 - TEC TEC MGP_CASTEiJ_T0100997.1 MGP_CASTEiJ_G0037910.1 mouse_genomes_project 3 128155303 128155435 + Gm25501 snoRNA snoRNA MGP_CASTEiJ_T0013875.1 MGP_CASTEiJ_G0012038.1 mouse_genomes_project 3 137577060 137577607 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063618.1 MGP_CASTEiJ_G0027018.1 mouse_genomes_project 3 128759883 128760854 - MGP_CASTEiJ_P0063618 protein_coding protein_coding MGP_CASTEiJ_T0062974.1 MGP_CASTEiJ_G0026886.1 mouse_genomes_project 3 106055257 106063242 - MGP_CASTEiJ_P0062974 Chil5 protein_coding protein_coding MGP_CASTEiJ_T0062975.1 MGP_CASTEiJ_G0026886.1 mouse_genomes_project 3 106055303 106063247 - MGP_CASTEiJ_P0062975 Chil5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062976.1 MGP_CASTEiJ_G0026886.1 mouse_genomes_project 3 106055470 106069815 - MGP_CASTEiJ_P0062976 Chil5 protein_coding protein_coding MGP_CASTEiJ_T0001207.1 MGP_CASTEiJ_G0001138.1 mouse_genomes_project 3 88550512 88551492 - TEC TEC MGP_CASTEiJ_T0013494.1 MGP_CASTEiJ_G0011657.1 mouse_genomes_project 3 10029490 10030075 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017213.1 MGP_CASTEiJ_G0014821.1 mouse_genomes_project 3 81331198 81337493 - Gm9989 processed_transcript lincRNA MGP_CASTEiJ_T0017214.1 MGP_CASTEiJ_G0014821.1 mouse_genomes_project 3 81334366 81337558 - Gm9989 processed_transcript retained_intron MGP_CASTEiJ_T0013681.1 MGP_CASTEiJ_G0011844.1 mouse_genomes_project 3 72947408 72948485 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099733.1 MGP_CASTEiJ_G0036646.1 mouse_genomes_project 3 96007715 96037208 - Rnu1b6 snRNA snRNA MGP_CASTEiJ_T0062769.1 MGP_CASTEiJ_G0026845.1 mouse_genomes_project 3 102840867 102853526 + MGP_CASTEiJ_P0062769 Sike1 protein_coding protein_coding MGP_CASTEiJ_T0062770.1 MGP_CASTEiJ_G0026845.1 mouse_genomes_project 3 102840889 102844418 + Sike1 protein_coding retained_intron MGP_CASTEiJ_T0062771.1 MGP_CASTEiJ_G0026845.1 mouse_genomes_project 3 102840954 102847246 + MGP_CASTEiJ_P0062771 Sike1 protein_coding protein_coding MGP_CASTEiJ_T0062772.1 MGP_CASTEiJ_G0026845.1 mouse_genomes_project 3 102841208 102842518 + Sike1 protein_coding retained_intron MGP_CASTEiJ_T0062773.1 MGP_CASTEiJ_G0026845.1 mouse_genomes_project 3 102841335 102846888 + MGP_CASTEiJ_P0062773 Sike1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062774.1 MGP_CASTEiJ_G0026845.1 mouse_genomes_project 3 102841895 102844405 + Sike1 protein_coding retained_intron MGP_CASTEiJ_T0061477.1 MGP_CASTEiJ_G0026541.1 mouse_genomes_project 3 87746265 87752086 - Hapln2 protein_coding retained_intron MGP_CASTEiJ_T0061478.1 MGP_CASTEiJ_G0026541.1 mouse_genomes_project 3 87746576 87751981 - MGP_CASTEiJ_P0061478 Hapln2 protein_coding protein_coding MGP_CASTEiJ_T0061479.1 MGP_CASTEiJ_G0026541.1 mouse_genomes_project 3 87747153 87748189 - Hapln2 protein_coding retained_intron MGP_CASTEiJ_T0061480.1 MGP_CASTEiJ_G0026541.1 mouse_genomes_project 3 87748049 87751995 - MGP_CASTEiJ_P0061480 Hapln2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063751.1 MGP_CASTEiJ_G0027043.1 mouse_genomes_project 3 132855366 132870022 - MGP_CASTEiJ_P0063751 Cyp2u1 protein_coding protein_coding MGP_CASTEiJ_T0063752.1 MGP_CASTEiJ_G0027043.1 mouse_genomes_project 3 132860062 132869998 - MGP_CASTEiJ_P0063752 Cyp2u1 protein_coding protein_coding MGP_CASTEiJ_T0063753.1 MGP_CASTEiJ_G0027043.1 mouse_genomes_project 3 132861205 132870025 - Cyp2u1 protein_coding processed_transcript MGP_CASTEiJ_T0099691.1 MGP_CASTEiJ_G0036604.1 mouse_genomes_project 3 43952482 43952600 + Gm23337 snRNA snRNA MGP_CASTEiJ_T0007394.1 MGP_CASTEiJ_G0006068.1 mouse_genomes_project 3 79350049 79514929 + A330069K06Rik lincRNA lincRNA MGP_CASTEiJ_T0062670.1 MGP_CASTEiJ_G0026820.1 mouse_genomes_project 3 98933252 99012151 + MGP_CASTEiJ_P0062670 Tbx15 protein_coding protein_coding MGP_CASTEiJ_T0062671.1 MGP_CASTEiJ_G0026820.1 mouse_genomes_project 3 98948584 99054996 + MGP_CASTEiJ_P0062671 Tbx15 protein_coding protein_coding MGP_CASTEiJ_T0062672.1 MGP_CASTEiJ_G0026820.1 mouse_genomes_project 3 98995538 99015104 + MGP_CASTEiJ_P0062672 Tbx15 protein_coding protein_coding MGP_CASTEiJ_T0004167.1 MGP_CASTEiJ_G0003668.1 mouse_genomes_project 3 94776480 94784489 - 6330562C20Rik antisense antisense MGP_CASTEiJ_T0004168.1 MGP_CASTEiJ_G0003668.1 mouse_genomes_project 3 94777060 94784538 - 6330562C20Rik antisense antisense MGP_CASTEiJ_T0004169.1 MGP_CASTEiJ_G0003668.1 mouse_genomes_project 3 94780750 94784548 - 6330562C20Rik antisense antisense MGP_CASTEiJ_T0013837.1 MGP_CASTEiJ_G0012000.1 mouse_genomes_project 3 124035321 124035745 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013493.1 MGP_CASTEiJ_G0011656.1 mouse_genomes_project 3 9805935 9806302 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060085.1 MGP_CASTEiJ_G0026261.1 mouse_genomes_project 3 16717742 16837824 + MGP_CASTEiJ_P0060085 Dnajc5b protein_coding protein_coding MGP_CASTEiJ_T0060086.1 MGP_CASTEiJ_G0026261.1 mouse_genomes_project 3 16717762 16837954 + MGP_CASTEiJ_P0060086 Dnajc5b protein_coding protein_coding MGP_CASTEiJ_T0060087.1 MGP_CASTEiJ_G0026261.1 mouse_genomes_project 3 16738734 16837842 + MGP_CASTEiJ_P0060087 Dnajc5b protein_coding protein_coding MGP_CASTEiJ_T0060088.1 MGP_CASTEiJ_G0026261.1 mouse_genomes_project 3 16741285 16837953 + MGP_CASTEiJ_P0060088 Dnajc5b protein_coding protein_coding MGP_CASTEiJ_T0013807.1 MGP_CASTEiJ_G0011970.1 mouse_genomes_project 3 113684276 113685107 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013829.1 MGP_CASTEiJ_G0011992.1 mouse_genomes_project 3 122257942 122258349 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064249.1 MGP_CASTEiJ_G0027137.1 mouse_genomes_project 3 154363577 154384615 - MGP_CASTEiJ_P0064249 Ifi44 protein_coding protein_coding MGP_CASTEiJ_T0064250.1 MGP_CASTEiJ_G0027137.1 mouse_genomes_project 3 154365092 154384537 - Ifi44 protein_coding processed_transcript MGP_CASTEiJ_T0064251.1 MGP_CASTEiJ_G0027137.1 mouse_genomes_project 3 154380358 154384602 - Ifi44 protein_coding retained_intron MGP_CASTEiJ_T0064252.1 MGP_CASTEiJ_G0027137.1 mouse_genomes_project 3 154380459 154384558 - Ifi44 protein_coding processed_transcript MGP_CASTEiJ_T0013523.1 MGP_CASTEiJ_G0011686.1 mouse_genomes_project 3 17003953 17004336 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060395.1 MGP_CASTEiJ_G0026316.1 mouse_genomes_project 3 31577739 31631138 + MGP_CASTEiJ_P0060395 Fxr1 protein_coding protein_coding MGP_CASTEiJ_T0060396.1 MGP_CASTEiJ_G0026316.1 mouse_genomes_project 3 31577894 31631167 + MGP_CASTEiJ_P0060396 Fxr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060397.1 MGP_CASTEiJ_G0026316.1 mouse_genomes_project 3 31577901 31631141 + MGP_CASTEiJ_P0060397 Fxr1 protein_coding protein_coding MGP_CASTEiJ_T0060398.1 MGP_CASTEiJ_G0026316.1 mouse_genomes_project 3 31577904 31632118 + MGP_CASTEiJ_P0060398 Fxr1 protein_coding protein_coding MGP_CASTEiJ_T0060399.1 MGP_CASTEiJ_G0026316.1 mouse_genomes_project 3 31577904 31631141 + MGP_CASTEiJ_P0060399 Fxr1 protein_coding protein_coding MGP_CASTEiJ_T0060400.1 MGP_CASTEiJ_G0026316.1 mouse_genomes_project 3 31592525 31627554 + MGP_CASTEiJ_P0060400 Fxr1 protein_coding protein_coding MGP_CASTEiJ_T0060401.1 MGP_CASTEiJ_G0026316.1 mouse_genomes_project 3 31599017 31601151 + Fxr1 protein_coding retained_intron MGP_CASTEiJ_T0060402.1 MGP_CASTEiJ_G0026316.1 mouse_genomes_project 3 31599020 31606781 + MGP_CASTEiJ_P0060402 Fxr1 protein_coding protein_coding MGP_CASTEiJ_T0060403.1 MGP_CASTEiJ_G0026316.1 mouse_genomes_project 3 31606875 31609354 + Fxr1 protein_coding retained_intron MGP_CASTEiJ_T0062251.1 MGP_CASTEiJ_G0026720.1 mouse_genomes_project 3 94500693 94553165 - MGP_CASTEiJ_P0062251 Pip5k1a protein_coding protein_coding MGP_CASTEiJ_T0062252.1 MGP_CASTEiJ_G0026720.1 mouse_genomes_project 3 94500706 94553220 - MGP_CASTEiJ_P0062252 Pip5k1a protein_coding protein_coding MGP_CASTEiJ_T0062253.1 MGP_CASTEiJ_G0026720.1 mouse_genomes_project 3 94500708 94553146 - MGP_CASTEiJ_P0062253 Pip5k1a protein_coding protein_coding MGP_CASTEiJ_T0062254.1 MGP_CASTEiJ_G0026720.1 mouse_genomes_project 3 94500732 94553068 - MGP_CASTEiJ_P0062254 Pip5k1a protein_coding protein_coding MGP_CASTEiJ_T0062255.1 MGP_CASTEiJ_G0026720.1 mouse_genomes_project 3 94512817 94522504 - Pip5k1a protein_coding processed_transcript MGP_CASTEiJ_T0062256.1 MGP_CASTEiJ_G0026720.1 mouse_genomes_project 3 94522092 94527203 - Pip5k1a protein_coding retained_intron MGP_CASTEiJ_T0062257.1 MGP_CASTEiJ_G0026720.1 mouse_genomes_project 3 94543460 94553113 - Pip5k1a protein_coding processed_transcript MGP_CASTEiJ_T0060842.1 MGP_CASTEiJ_G0026395.1 mouse_genomes_project 3 55797999 55814381 - MGP_CASTEiJ_P0060842 Tm4sf1 protein_coding protein_coding MGP_CASTEiJ_T0060843.1 MGP_CASTEiJ_G0026395.1 mouse_genomes_project 3 55798000 55807301 - MGP_CASTEiJ_P0060843 Tm4sf1 protein_coding protein_coding MGP_CASTEiJ_T0060844.1 MGP_CASTEiJ_G0026395.1 mouse_genomes_project 3 55799852 55814434 - MGP_CASTEiJ_P0060844 Tm4sf1 protein_coding protein_coding MGP_CASTEiJ_T0060845.1 MGP_CASTEiJ_G0026395.1 mouse_genomes_project 3 55799885 55806964 - Tm4sf1 protein_coding processed_transcript MGP_CASTEiJ_T0060846.1 MGP_CASTEiJ_G0026395.1 mouse_genomes_project 3 55805185 55807537 - MGP_CASTEiJ_P0060846 Tm4sf1 protein_coding protein_coding MGP_CASTEiJ_T0060847.1 MGP_CASTEiJ_G0026395.1 mouse_genomes_project 3 55805221 55806106 - Tm4sf1 protein_coding retained_intron MGP_CASTEiJ_T0064131.1 MGP_CASTEiJ_G0027114.1 mouse_genomes_project 3 147839184 147869244 + MGP_CASTEiJ_P0064131 Znhit6 protein_coding protein_coding MGP_CASTEiJ_T0064132.1 MGP_CASTEiJ_G0027114.1 mouse_genomes_project 3 147839211 147869919 + MGP_CASTEiJ_P0064132 Znhit6 protein_coding protein_coding MGP_CASTEiJ_T0064133.1 MGP_CASTEiJ_G0027114.1 mouse_genomes_project 3 147839226 147841510 + MGP_CASTEiJ_P0064133 Znhit6 protein_coding protein_coding MGP_CASTEiJ_T0064134.1 MGP_CASTEiJ_G0027114.1 mouse_genomes_project 3 147839237 147860827 + MGP_CASTEiJ_P0064134 Znhit6 protein_coding protein_coding MGP_CASTEiJ_T0064135.1 MGP_CASTEiJ_G0027114.1 mouse_genomes_project 3 147839253 147847004 + MGP_CASTEiJ_P0064135 Znhit6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064136.1 MGP_CASTEiJ_G0027114.1 mouse_genomes_project 3 147839315 147859195 + MGP_CASTEiJ_P0064136 Znhit6 protein_coding protein_coding MGP_CASTEiJ_T0064137.1 MGP_CASTEiJ_G0027114.1 mouse_genomes_project 3 147862029 147869143 + Znhit6 protein_coding retained_intron MGP_CASTEiJ_T0062574.1 MGP_CASTEiJ_G0026794.1 mouse_genomes_project 3 96449428 96487649 - MGP_CASTEiJ_P0062574 Gpr89 protein_coding protein_coding MGP_CASTEiJ_T0062575.1 MGP_CASTEiJ_G0026794.1 mouse_genomes_project 3 96449738 96475239 - Gpr89 protein_coding processed_transcript MGP_CASTEiJ_T0062576.1 MGP_CASTEiJ_G0026794.1 mouse_genomes_project 3 96452633 96457326 - Gpr89 protein_coding retained_intron MGP_CASTEiJ_T0062577.1 MGP_CASTEiJ_G0026794.1 mouse_genomes_project 3 96461711 96480863 - Gpr89 protein_coding processed_transcript MGP_CASTEiJ_T0062578.1 MGP_CASTEiJ_G0026794.1 mouse_genomes_project 3 96463615 96479752 - Gpr89 protein_coding processed_transcript MGP_CASTEiJ_T0062579.1 MGP_CASTEiJ_G0026794.1 mouse_genomes_project 3 96463615 96487615 - MGP_CASTEiJ_P0062579 Gpr89 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013544.1 MGP_CASTEiJ_G0011707.1 mouse_genomes_project 3 27188846 27188985 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007513.1 MGP_CASTEiJ_G0006158.1 mouse_genomes_project 3 132356412 132359966 - lincRNA lincRNA MGP_CASTEiJ_T0063637.1 MGP_CASTEiJ_G0027022.1 mouse_genomes_project 3 129034808 129045572 + MGP_CASTEiJ_P0063637 Tifa protein_coding protein_coding MGP_CASTEiJ_T0063638.1 MGP_CASTEiJ_G0027022.1 mouse_genomes_project 3 129034913 129078557 + Tifa protein_coding processed_transcript MGP_CASTEiJ_T0063639.1 MGP_CASTEiJ_G0027022.1 mouse_genomes_project 3 129034915 129045163 + MGP_CASTEiJ_P0063639 Tifa protein_coding protein_coding MGP_CASTEiJ_T0063640.1 MGP_CASTEiJ_G0027022.1 mouse_genomes_project 3 129035651 129045163 + MGP_CASTEiJ_P0063640 Tifa protein_coding protein_coding MGP_CASTEiJ_T0063641.1 MGP_CASTEiJ_G0027022.1 mouse_genomes_project 3 129035800 129045572 + MGP_CASTEiJ_P0063641 Tifa protein_coding protein_coding MGP_CASTEiJ_T0007348.1 MGP_CASTEiJ_G0006033.1 mouse_genomes_project 3 49275126 49290944 - Gm29230 lincRNA lincRNA MGP_CASTEiJ_T0062088.1 MGP_CASTEiJ_G0026672.1 mouse_genomes_project 3 91971323 91973062 - MGP_CASTEiJ_P0062088 Lce1d protein_coding protein_coding MGP_CASTEiJ_T0062538.1 MGP_CASTEiJ_G0026787.1 mouse_genomes_project 3 96228890 96251466 + MGP_CASTEiJ_P0062538 protein_coding unknown_likely_coding MGP_CASTEiJ_T0062539.1 MGP_CASTEiJ_G0026787.1 mouse_genomes_project 3 96229110 96251436 + MGP_CASTEiJ_P0062539 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062540.1 MGP_CASTEiJ_G0026787.1 mouse_genomes_project 3 96240468 96243600 + protein_coding processed_transcript MGP_CASTEiJ_T0060269.1 MGP_CASTEiJ_G0026294.1 mouse_genomes_project 3 28242259 28269695 + MGP_CASTEiJ_P0060269 Samd7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060270.1 MGP_CASTEiJ_G0026294.1 mouse_genomes_project 3 28242306 28269703 + MGP_CASTEiJ_P0060270 Samd7 protein_coding protein_coding MGP_CASTEiJ_T0060271.1 MGP_CASTEiJ_G0026294.1 mouse_genomes_project 3 28246991 28267989 + MGP_CASTEiJ_P0060271 Samd7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060272.1 MGP_CASTEiJ_G0026294.1 mouse_genomes_project 3 28252118 28253358 + Samd7 protein_coding retained_intron MGP_CASTEiJ_T0017275.1 MGP_CASTEiJ_G0014845.1 mouse_genomes_project 3 151417089 151419042 + Gm43572 processed_transcript processed_transcript MGP_CASTEiJ_T0013796.1 MGP_CASTEiJ_G0011959.1 mouse_genomes_project 3 110750325 110750662 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062964.1 MGP_CASTEiJ_G0026883.1 mouse_genomes_project 3 105993861 106000410 + Wdr77 protein_coding retained_intron MGP_CASTEiJ_T0062965.1 MGP_CASTEiJ_G0026883.1 mouse_genomes_project 3 105993867 106004353 + MGP_CASTEiJ_P0062965 Wdr77 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062966.1 MGP_CASTEiJ_G0026883.1 mouse_genomes_project 3 105993937 106006100 + MGP_CASTEiJ_P0062966 Wdr77 protein_coding protein_coding MGP_CASTEiJ_T0062967.1 MGP_CASTEiJ_G0026883.1 mouse_genomes_project 3 105998760 105999867 + Wdr77 protein_coding retained_intron MGP_CASTEiJ_T0007457.1 MGP_CASTEiJ_G0006115.1 mouse_genomes_project 3 102214001 102215783 + Gm43242 lincRNA lincRNA MGP_CASTEiJ_T0013863.1 MGP_CASTEiJ_G0012026.1 mouse_genomes_project 3 134590061 134590490 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017202.1 MGP_CASTEiJ_G0014816.1 mouse_genomes_project 3 38588771 38592970 + processed_transcript retained_intron MGP_CASTEiJ_T0099737.1 MGP_CASTEiJ_G0036650.1 mouse_genomes_project 3 102799498 102799663 - Gm22826 snRNA snRNA MGP_CASTEiJ_T0013879.1 MGP_CASTEiJ_G0012042.1 mouse_genomes_project 3 138023951 138025460 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063630.1 MGP_CASTEiJ_G0027021.1 mouse_genomes_project 3 128914333 128980284 - MGP_CASTEiJ_P0063630 Alpk1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063631.1 MGP_CASTEiJ_G0027021.1 mouse_genomes_project 3 128915936 129025434 - MGP_CASTEiJ_P0063631 Alpk1 protein_coding protein_coding MGP_CASTEiJ_T0063632.1 MGP_CASTEiJ_G0027021.1 mouse_genomes_project 3 128915936 128980160 - MGP_CASTEiJ_P0063632 Alpk1 protein_coding protein_coding MGP_CASTEiJ_T0063633.1 MGP_CASTEiJ_G0027021.1 mouse_genomes_project 3 128916025 129025434 - Alpk1 protein_coding retained_intron MGP_CASTEiJ_T0063634.1 MGP_CASTEiJ_G0027021.1 mouse_genomes_project 3 128925110 128932780 - MGP_CASTEiJ_P0063634 Alpk1 protein_coding protein_coding MGP_CASTEiJ_T0063635.1 MGP_CASTEiJ_G0027021.1 mouse_genomes_project 3 128974856 129025420 - Alpk1 protein_coding retained_intron MGP_CASTEiJ_T0063636.1 MGP_CASTEiJ_G0027021.1 mouse_genomes_project 3 129007096 129025397 - Alpk1 protein_coding processed_transcript MGP_CASTEiJ_T0001228.1 MGP_CASTEiJ_G0001159.1 mouse_genomes_project 3 106776078 106779061 + TEC TEC MGP_CASTEiJ_T0010230.1 MGP_CASTEiJ_G0008418.1 mouse_genomes_project 3 67805983 67806047 + Mir15b miRNA miRNA MGP_CASTEiJ_T0001195.1 MGP_CASTEiJ_G0001126.1 mouse_genomes_project 3 75697184 75700736 + TEC TEC MGP_CASTEiJ_T0004140.1 MGP_CASTEiJ_G0003647.1 mouse_genomes_project 3 83270307 83289461 - Gm26771 antisense antisense MGP_CASTEiJ_T0004226.1 MGP_CASTEiJ_G0003702.1 mouse_genomes_project 3 122416787 122421198 + A530020G20Rik antisense antisense MGP_CASTEiJ_T0004227.1 MGP_CASTEiJ_G0003702.1 mouse_genomes_project 3 122416797 122417651 + A530020G20Rik antisense antisense MGP_CASTEiJ_T0004228.1 MGP_CASTEiJ_G0003702.1 mouse_genomes_project 3 122416847 122418619 + A530020G20Rik antisense antisense MGP_CASTEiJ_T0062152.1 MGP_CASTEiJ_G0026705.1 mouse_genomes_project 3 93862931 93866476 + Mrpl9 protein_coding retained_intron MGP_CASTEiJ_T0062153.1 MGP_CASTEiJ_G0026705.1 mouse_genomes_project 3 93862938 93868338 + MGP_CASTEiJ_P0062153 Mrpl9 protein_coding protein_coding MGP_CASTEiJ_T0062154.1 MGP_CASTEiJ_G0026705.1 mouse_genomes_project 3 93862950 93871302 + MGP_CASTEiJ_P0062154 Mrpl9 protein_coding protein_coding MGP_CASTEiJ_T0060197.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 25650203 26059959 + MGP_CASTEiJ_P0060197 Tnik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060198.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 25650204 26065230 + MGP_CASTEiJ_P0060198 Tnik protein_coding protein_coding MGP_CASTEiJ_T0060199.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 25650265 25889384 + Tnik protein_coding retained_intron MGP_CASTEiJ_T0060200.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 25650265 25750326 + Tnik protein_coding retained_intron MGP_CASTEiJ_T0060201.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 25650552 26055823 + Tnik protein_coding retained_intron MGP_CASTEiJ_T0060202.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 25650552 26057593 + MGP_CASTEiJ_P0060202 Tnik protein_coding protein_coding MGP_CASTEiJ_T0060203.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 25650552 26057593 + MGP_CASTEiJ_P0060203 Tnik protein_coding protein_coding MGP_CASTEiJ_T0060204.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 25650571 25653189 + Tnik protein_coding retained_intron MGP_CASTEiJ_T0060205.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 25650632 26057352 + MGP_CASTEiJ_P0060205 Tnik protein_coding protein_coding MGP_CASTEiJ_T0060206.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 25650632 26057352 + MGP_CASTEiJ_P0060206 Tnik protein_coding protein_coding MGP_CASTEiJ_T0060207.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 25650632 26057352 + MGP_CASTEiJ_P0060207 Tnik protein_coding protein_coding MGP_CASTEiJ_T0060208.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 25650632 26057352 + MGP_CASTEiJ_P0060208 Tnik protein_coding protein_coding MGP_CASTEiJ_T0060209.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 25650632 26057352 + MGP_CASTEiJ_P0060209 Tnik protein_coding protein_coding MGP_CASTEiJ_T0060210.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 25799562 25981685 + Tnik protein_coding processed_transcript MGP_CASTEiJ_T0060211.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 25923901 25925717 + Tnik protein_coding retained_intron MGP_CASTEiJ_T0060212.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 26014534 26023081 + Tnik protein_coding retained_intron MGP_CASTEiJ_T0060213.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 26037275 26055316 + Tnik protein_coding retained_intron MGP_CASTEiJ_T0060214.1 MGP_CASTEiJ_G0026283.1 mouse_genomes_project 3 26056215 26058123 + Tnik protein_coding retained_intron MGP_CASTEiJ_T0013771.1 MGP_CASTEiJ_G0011934.1 mouse_genomes_project 3 101888882 101889575 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062985.1 MGP_CASTEiJ_G0026890.1 mouse_genomes_project 3 106685063 106705586 - MGP_CASTEiJ_P0062985 Chil6 protein_coding protein_coding MGP_CASTEiJ_T0001133.1 MGP_CASTEiJ_G0001066.1 mouse_genomes_project 3 49137484 49140830 - TEC TEC MGP_CASTEiJ_T0063531.1 MGP_CASTEiJ_G0027006.1 mouse_genomes_project 3 124461737 124520519 + MGP_CASTEiJ_P0063531 Prss12 protein_coding protein_coding MGP_CASTEiJ_T0004246.1 MGP_CASTEiJ_G0003717.1 mouse_genomes_project 3 131201971 131212059 + 6330410L21Rik antisense antisense MGP_CASTEiJ_T0100969.1 MGP_CASTEiJ_G0037882.1 mouse_genomes_project 3 85722939 85723061 + Gm25188 snoRNA snoRNA MGP_CASTEiJ_T0101008.1 MGP_CASTEiJ_G0037921.1 mouse_genomes_project 3 156680599 156680670 - Snord45b snoRNA snoRNA MGP_CASTEiJ_T0099684.1 MGP_CASTEiJ_G0036597.1 mouse_genomes_project 3 21760626 21760733 + Gm24704 snRNA snRNA MGP_CASTEiJ_T0062656.1 MGP_CASTEiJ_G0026816.1 mouse_genomes_project 3 98433778 98443701 - MGP_CASTEiJ_P0062656 Hsd3b3 protein_coding protein_coding MGP_CASTEiJ_T0062657.1 MGP_CASTEiJ_G0026816.1 mouse_genomes_project 3 98433778 98443701 - MGP_CASTEiJ_P0062657 Hsd3b3 protein_coding protein_coding MGP_CASTEiJ_T0062658.1 MGP_CASTEiJ_G0026816.1 mouse_genomes_project 3 98433778 98443699 - MGP_CASTEiJ_P0062658 Hsd3b3 protein_coding protein_coding MGP_CASTEiJ_T0062659.1 MGP_CASTEiJ_G0026816.1 mouse_genomes_project 3 98434691 98452760 - MGP_CASTEiJ_P0062659 Hsd3b3 protein_coding protein_coding MGP_CASTEiJ_T0062660.1 MGP_CASTEiJ_G0026816.1 mouse_genomes_project 3 98447952 98456281 - Hsd3b3 protein_coding processed_transcript MGP_CASTEiJ_T0064349.1 MGP_CASTEiJ_G0027149.1 mouse_genomes_project 3 155509907 155687735 - MGP_CASTEiJ_P0064349 St6galnac5 protein_coding protein_coding MGP_CASTEiJ_T0064350.1 MGP_CASTEiJ_G0027149.1 mouse_genomes_project 3 155510864 155547313 - MGP_CASTEiJ_P0064350 St6galnac5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064351.1 MGP_CASTEiJ_G0027149.1 mouse_genomes_project 3 155680933 155687541 - St6galnac5 protein_coding processed_transcript MGP_CASTEiJ_T0001234.1 MGP_CASTEiJ_G0001165.1 mouse_genomes_project 3 108941420 108943581 - TEC TEC MGP_CASTEiJ_T0013888.1 MGP_CASTEiJ_G0012051.1 mouse_genomes_project 3 140442950 140443139 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007511.1 MGP_CASTEiJ_G0006157.1 mouse_genomes_project 3 132275070 132276864 + Gm43522 lincRNA lincRNA MGP_CASTEiJ_T0007512.1 MGP_CASTEiJ_G0006157.1 mouse_genomes_project 3 132275999 132277922 + Gm43522 lincRNA lincRNA MGP_CASTEiJ_T0062382.1 MGP_CASTEiJ_G0026744.1 mouse_genomes_project 3 95144684 95149072 + MGP_CASTEiJ_P0062382 Mcl1 protein_coding protein_coding MGP_CASTEiJ_T0062383.1 MGP_CASTEiJ_G0026744.1 mouse_genomes_project 3 95144753 95146720 + MGP_CASTEiJ_P0062383 Mcl1 protein_coding protein_coding MGP_CASTEiJ_T0062114.1 MGP_CASTEiJ_G0026692.1 mouse_genomes_project 3 92604256 92608764 + Flg protein_coding TEC MGP_CASTEiJ_T0062115.1 MGP_CASTEiJ_G0026692.1 mouse_genomes_project 3 92604274 92613800 + MGP_CASTEiJ_P0062115 Flg protein_coding protein_coding MGP_CASTEiJ_T0062116.1 MGP_CASTEiJ_G0026692.1 mouse_genomes_project 3 92608286 92613800 + MGP_CASTEiJ_P0062116 Flg protein_coding protein_coding MGP_CASTEiJ_T0010262.1 MGP_CASTEiJ_G0008450.1 mouse_genomes_project 3 128759260 128759334 + Mir302b miRNA miRNA MGP_CASTEiJ_T0004200.1 MGP_CASTEiJ_G0003689.1 mouse_genomes_project 3 106036212 106055865 + Gm42722 antisense antisense MGP_CASTEiJ_T0013532.1 MGP_CASTEiJ_G0011695.1 mouse_genomes_project 3 19572975 19573325 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001348.1 MGP_CASTEiJ_G0001278.1 mouse_genomes_project 3 161121784 161124773 + TEC TEC MGP_CASTEiJ_T0061388.1 MGP_CASTEiJ_G0026524.1 mouse_genomes_project 3 87037535 87051000 + MGP_CASTEiJ_P0061388 Cd5l protein_coding protein_coding MGP_CASTEiJ_T0007275.1 MGP_CASTEiJ_G0005978.1 mouse_genomes_project 3 10915802 10918499 - Gm2464 lincRNA lincRNA MGP_CASTEiJ_T0063292.1 MGP_CASTEiJ_G0026962.1 mouse_genomes_project 3 116465845 116469880 - Slc30a7 protein_coding processed_transcript MGP_CASTEiJ_T0063293.1 MGP_CASTEiJ_G0026962.1 mouse_genomes_project 3 116465845 116535579 - MGP_CASTEiJ_P0063293 Slc30a7 protein_coding protein_coding MGP_CASTEiJ_T0063294.1 MGP_CASTEiJ_G0026962.1 mouse_genomes_project 3 116510634 116518555 - Slc30a7 protein_coding processed_transcript MGP_CASTEiJ_T0063295.1 MGP_CASTEiJ_G0026962.1 mouse_genomes_project 3 116517556 116519777 - Slc30a7 protein_coding retained_intron MGP_CASTEiJ_T0060136.1 MGP_CASTEiJ_G0026271.1 mouse_genomes_project 3 17549884 17607092 - MGP_CASTEiJ_P0060136 Agtr1b protein_coding protein_coding MGP_CASTEiJ_T0060911.1 MGP_CASTEiJ_G0026412.1 mouse_genomes_project 3 57800150 57801342 - Gpr87 protein_coding retained_intron MGP_CASTEiJ_T0060912.1 MGP_CASTEiJ_G0026412.1 mouse_genomes_project 3 57800150 57816335 - MGP_CASTEiJ_P0060912 Gpr87 protein_coding protein_coding MGP_CASTEiJ_T0060913.1 MGP_CASTEiJ_G0026412.1 mouse_genomes_project 3 57800233 57801313 - MGP_CASTEiJ_P0060913 Gpr87 protein_coding protein_coding MGP_CASTEiJ_T0098893.1 MGP_CASTEiJ_G0035817.1 mouse_genomes_project 3 101179755 101182032 + Gm42939 sense_intronic sense_intronic MGP_CASTEiJ_T0062384.1 MGP_CASTEiJ_G0026745.1 mouse_genomes_project 3 95162539 95177333 - MGP_CASTEiJ_P0062384 Adamtsl4 protein_coding protein_coding MGP_CASTEiJ_T0062385.1 MGP_CASTEiJ_G0026745.1 mouse_genomes_project 3 95162542 95177274 - MGP_CASTEiJ_P0062385 Adamtsl4 protein_coding protein_coding MGP_CASTEiJ_T0062386.1 MGP_CASTEiJ_G0026745.1 mouse_genomes_project 3 95163088 95163490 - Adamtsl4 protein_coding processed_transcript MGP_CASTEiJ_T0062387.1 MGP_CASTEiJ_G0026745.1 mouse_genomes_project 3 95165369 95166441 - Adamtsl4 protein_coding processed_transcript MGP_CASTEiJ_T0062388.1 MGP_CASTEiJ_G0026745.1 mouse_genomes_project 3 95170892 95177281 - MGP_CASTEiJ_P0062388 Adamtsl4 protein_coding protein_coding MGP_CASTEiJ_T0013833.1 MGP_CASTEiJ_G0011996.1 mouse_genomes_project 3 123124526 123126050 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013731.1 MGP_CASTEiJ_G0011894.1 mouse_genomes_project 3 92243568 92243960 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013759.1 MGP_CASTEiJ_G0011922.1 mouse_genomes_project 3 98871440 98871975 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098933.1 MGP_CASTEiJ_G0035857.1 mouse_genomes_project 3 146328385 146330466 - Gm43445 sense_intronic sense_intronic MGP_CASTEiJ_T0001251.1 MGP_CASTEiJ_G0001182.1 mouse_genomes_project 3 122308225 122309502 + TEC TEC MGP_CASTEiJ_T0060831.1 MGP_CASTEiJ_G0026393.1 mouse_genomes_project 3 54119041 54699685 - MGP_CASTEiJ_P0060831 Nbea protein_coding protein_coding MGP_CASTEiJ_T0060832.1 MGP_CASTEiJ_G0026393.1 mouse_genomes_project 3 54119045 54191805 - Nbea protein_coding processed_transcript MGP_CASTEiJ_T0060833.1 MGP_CASTEiJ_G0026393.1 mouse_genomes_project 3 54120367 54295239 - Nbea protein_coding processed_transcript MGP_CASTEiJ_T0060834.1 MGP_CASTEiJ_G0026393.1 mouse_genomes_project 3 54197453 54229067 - Nbea protein_coding retained_intron MGP_CASTEiJ_T0060835.1 MGP_CASTEiJ_G0026393.1 mouse_genomes_project 3 54287065 54295993 - Nbea protein_coding retained_intron MGP_CASTEiJ_T0060836.1 MGP_CASTEiJ_G0026393.1 mouse_genomes_project 3 54287972 54291825 - Nbea protein_coding retained_intron MGP_CASTEiJ_T0060838.1 MGP_CASTEiJ_G0026393.1 mouse_genomes_project 3 54476301 54483688 - Nbea protein_coding retained_intron MGP_CASTEiJ_T0060839.1 MGP_CASTEiJ_G0026393.1 mouse_genomes_project 3 54516786 54519215 - Nbea protein_coding retained_intron MGP_CASTEiJ_T0060840.1 MGP_CASTEiJ_G0026393.1 mouse_genomes_project 3 54533798 54536909 - Nbea protein_coding retained_intron MGP_CASTEiJ_T0060841.1 MGP_CASTEiJ_G0026393.1 mouse_genomes_project 3 54543423 54551866 - Nbea protein_coding retained_intron MGP_CASTEiJ_T0098890.1 MGP_CASTEiJ_G0035814.1 mouse_genomes_project 3 100352515 100356120 - Gm43462 sense_intronic sense_intronic MGP_CASTEiJ_T0013576.1 MGP_CASTEiJ_G0011739.1 mouse_genomes_project 3 37635704 37635984 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062527.1 MGP_CASTEiJ_G0026784.1 mouse_genomes_project 3 96187276 96198796 + Pex11b protein_coding processed_transcript MGP_CASTEiJ_T0062528.1 MGP_CASTEiJ_G0026784.1 mouse_genomes_project 3 96187330 96198796 + MGP_CASTEiJ_P0062528 Pex11b protein_coding protein_coding MGP_CASTEiJ_T0062530.1 MGP_CASTEiJ_G0026784.1 mouse_genomes_project 3 96187400 96197463 + MGP_CASTEiJ_P0062530 Pex11b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062531.1 MGP_CASTEiJ_G0026784.1 mouse_genomes_project 3 96187553 96188854 + Pex11b protein_coding retained_intron MGP_CASTEiJ_T0062532.1 MGP_CASTEiJ_G0026784.1 mouse_genomes_project 3 96187572 96198156 + MGP_CASTEiJ_P0062532 Pex11b protein_coding protein_coding MGP_CASTEiJ_T0062533.1 MGP_CASTEiJ_G0026784.1 mouse_genomes_project 3 96187733 96198156 + MGP_CASTEiJ_P0062533 Pex11b protein_coding protein_coding MGP_CASTEiJ_T0062534.1 MGP_CASTEiJ_G0026784.1 mouse_genomes_project 3 96188953 96197230 + Pex11b protein_coding retained_intron MGP_CASTEiJ_T0007424.1 MGP_CASTEiJ_G0006087.1 mouse_genomes_project 3 89705585 89711311 - 4632404H12Rik lincRNA lincRNA MGP_CASTEiJ_T0007425.1 MGP_CASTEiJ_G0006087.1 mouse_genomes_project 3 89706195 89710866 - 4632404H12Rik lincRNA lincRNA MGP_CASTEiJ_T0064062.1 MGP_CASTEiJ_G0027102.1 mouse_genomes_project 3 144858748 144879470 + MGP_CASTEiJ_P0064062 Gtf2b protein_coding protein_coding MGP_CASTEiJ_T0064063.1 MGP_CASTEiJ_G0027102.1 mouse_genomes_project 3 144858926 144862115 + Gtf2b protein_coding retained_intron MGP_CASTEiJ_T0061794.1 MGP_CASTEiJ_G0026592.1 mouse_genomes_project 3 89232036 89236675 - MGP_CASTEiJ_P0061794 Efna4 protein_coding protein_coding MGP_CASTEiJ_T0062929.1 MGP_CASTEiJ_G0026874.1 mouse_genomes_project 3 105041505 105054665 + MGP_CASTEiJ_P0062929 4930564D02Rik protein_coding protein_coding MGP_CASTEiJ_T0060355.1 MGP_CASTEiJ_G0026311.1 mouse_genomes_project 3 30283016 30294984 + MGP_CASTEiJ_P0060355 Ndufb5 protein_coding protein_coding MGP_CASTEiJ_T0060356.1 MGP_CASTEiJ_G0026311.1 mouse_genomes_project 3 30283021 30286205 + Ndufb5 protein_coding retained_intron MGP_CASTEiJ_T0060357.1 MGP_CASTEiJ_G0026311.1 mouse_genomes_project 3 30283027 30297667 + MGP_CASTEiJ_P0060357 Ndufb5 protein_coding protein_coding MGP_CASTEiJ_T0060358.1 MGP_CASTEiJ_G0026311.1 mouse_genomes_project 3 30283051 30297348 + MGP_CASTEiJ_P0060358 Ndufb5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060359.1 MGP_CASTEiJ_G0026311.1 mouse_genomes_project 3 30283052 30294555 + MGP_CASTEiJ_P0060359 Ndufb5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060360.1 MGP_CASTEiJ_G0026311.1 mouse_genomes_project 3 30287601 30297204 + MGP_CASTEiJ_P0060360 Ndufb5 protein_coding protein_coding MGP_CASTEiJ_T0001190.1 MGP_CASTEiJ_G0001121.1 mouse_genomes_project 3 72145123 72147256 + TEC TEC MGP_CASTEiJ_T0099738.1 MGP_CASTEiJ_G0036651.1 mouse_genomes_project 3 103329228 103329335 - Gm25199 snRNA snRNA MGP_CASTEiJ_T0061116.1 MGP_CASTEiJ_G0026457.1 mouse_genomes_project 3 67868013 67930342 - MGP_CASTEiJ_P0061116 Kpna4 protein_coding protein_coding MGP_CASTEiJ_T0061117.1 MGP_CASTEiJ_G0026457.1 mouse_genomes_project 3 67873090 67930321 - MGP_CASTEiJ_P0061117 Kpna4 protein_coding protein_coding MGP_CASTEiJ_T0061118.1 MGP_CASTEiJ_G0026457.1 mouse_genomes_project 3 67896929 67929859 - MGP_CASTEiJ_P0061118 Kpna4 protein_coding protein_coding MGP_CASTEiJ_T0098908.1 MGP_CASTEiJ_G0035832.1 mouse_genomes_project 3 104005112 104006180 - 9530097N15Rik sense_intronic sense_intronic MGP_CASTEiJ_T0062487.1 MGP_CASTEiJ_G0026761.1 mouse_genomes_project 3 95720100 95741556 + MGP_CASTEiJ_P0062487 Sv2a protein_coding protein_coding MGP_CASTEiJ_T0062488.1 MGP_CASTEiJ_G0026761.1 mouse_genomes_project 3 95731759 95733548 + Sv2a protein_coding retained_intron MGP_CASTEiJ_T0062489.1 MGP_CASTEiJ_G0026761.1 mouse_genomes_project 3 95738579 95741553 + Sv2a protein_coding processed_transcript MGP_CASTEiJ_T0063008.1 MGP_CASTEiJ_G0026894.1 mouse_genomes_project 3 106985074 107033900 + MGP_CASTEiJ_P0063008 Lrif1 protein_coding protein_coding MGP_CASTEiJ_T0063009.1 MGP_CASTEiJ_G0026894.1 mouse_genomes_project 3 106985085 107030196 + Lrif1 protein_coding processed_transcript MGP_CASTEiJ_T0063010.1 MGP_CASTEiJ_G0026894.1 mouse_genomes_project 3 107015860 107030209 + MGP_CASTEiJ_P0063010 Lrif1 protein_coding protein_coding MGP_CASTEiJ_T0063011.1 MGP_CASTEiJ_G0026894.1 mouse_genomes_project 3 107016025 107032378 + MGP_CASTEiJ_P0063011 Lrif1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063012.1 MGP_CASTEiJ_G0026894.1 mouse_genomes_project 3 107016025 107034573 + MGP_CASTEiJ_P0063012 Lrif1 protein_coding protein_coding MGP_CASTEiJ_T0063013.1 MGP_CASTEiJ_G0026894.1 mouse_genomes_project 3 107016040 107030047 + MGP_CASTEiJ_P0063013 Lrif1 protein_coding protein_coding MGP_CASTEiJ_T0063014.1 MGP_CASTEiJ_G0026894.1 mouse_genomes_project 3 107016057 107032614 + Lrif1 protein_coding retained_intron MGP_CASTEiJ_T0063015.1 MGP_CASTEiJ_G0026894.1 mouse_genomes_project 3 107016058 107024644 + Lrif1 protein_coding retained_intron MGP_CASTEiJ_T0063016.1 MGP_CASTEiJ_G0026894.1 mouse_genomes_project 3 107016058 107031583 + Lrif1 protein_coding processed_transcript MGP_CASTEiJ_T0063017.1 MGP_CASTEiJ_G0026894.1 mouse_genomes_project 3 107016068 107034570 + MGP_CASTEiJ_P0063017 Lrif1 protein_coding protein_coding MGP_CASTEiJ_T0063018.1 MGP_CASTEiJ_G0026894.1 mouse_genomes_project 3 107016099 107030061 + MGP_CASTEiJ_P0063018 Lrif1 protein_coding protein_coding MGP_CASTEiJ_T0063019.1 MGP_CASTEiJ_G0026894.1 mouse_genomes_project 3 107030911 107031823 + Lrif1 protein_coding retained_intron MGP_CASTEiJ_T0063139.1 MGP_CASTEiJ_G0026932.1 mouse_genomes_project 3 108750532 108767162 + MGP_CASTEiJ_P0063139 Mybphl protein_coding protein_coding MGP_CASTEiJ_T0013763.1 MGP_CASTEiJ_G0011926.1 mouse_genomes_project 3 99788206 99788374 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061489.1 MGP_CASTEiJ_G0026545.1 mouse_genomes_project 3 87810705 87852398 + MGP_CASTEiJ_P0061489 Iqgap3 protein_coding protein_coding MGP_CASTEiJ_T0061490.1 MGP_CASTEiJ_G0026545.1 mouse_genomes_project 3 87810754 87816262 + Iqgap3 protein_coding retained_intron MGP_CASTEiJ_T0061491.1 MGP_CASTEiJ_G0026545.1 mouse_genomes_project 3 87810762 87838578 + MGP_CASTEiJ_P0061491 Iqgap3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061492.1 MGP_CASTEiJ_G0026545.1 mouse_genomes_project 3 87814859 87816255 + Iqgap3 protein_coding retained_intron MGP_CASTEiJ_T0061493.1 MGP_CASTEiJ_G0026545.1 mouse_genomes_project 3 87835415 87852394 + MGP_CASTEiJ_P0061493 Iqgap3 protein_coding protein_coding MGP_CASTEiJ_T0061494.1 MGP_CASTEiJ_G0026545.1 mouse_genomes_project 3 87837305 87843543 + Iqgap3 protein_coding retained_intron MGP_CASTEiJ_T0013785.1 MGP_CASTEiJ_G0011948.1 mouse_genomes_project 3 106121888 106122204 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001277.1 MGP_CASTEiJ_G0001208.1 mouse_genomes_project 3 128158231 128160713 - TEC TEC MGP_CASTEiJ_T0001185.1 MGP_CASTEiJ_G0001116.1 mouse_genomes_project 3 64892051 64893105 + TEC TEC MGP_CASTEiJ_T0101001.1 MGP_CASTEiJ_G0037914.1 mouse_genomes_project 3 135176132 135176264 - Gm23011 snoRNA snoRNA MGP_CASTEiJ_T0007359.1 MGP_CASTEiJ_G0006042.1 mouse_genomes_project 3 52112021 52120911 + Gm43565 lincRNA lincRNA MGP_CASTEiJ_T0063912.1 MGP_CASTEiJ_G0027069.1 mouse_genomes_project 3 139091518 139183185 + MGP_CASTEiJ_P0063912 Emcn protein_coding protein_coding MGP_CASTEiJ_T0063913.1 MGP_CASTEiJ_G0027069.1 mouse_genomes_project 3 139091541 139172857 + Emcn protein_coding retained_intron MGP_CASTEiJ_T0063914.1 MGP_CASTEiJ_G0027069.1 mouse_genomes_project 3 139091594 139182107 + MGP_CASTEiJ_P0063914 Emcn protein_coding protein_coding MGP_CASTEiJ_T0063915.1 MGP_CASTEiJ_G0027069.1 mouse_genomes_project 3 139091625 139178355 + MGP_CASTEiJ_P0063915 Emcn protein_coding protein_coding MGP_CASTEiJ_T0098876.1 MGP_CASTEiJ_G0035801.1 mouse_genomes_project 3 78953173 78956642 - Gm26984 sense_intronic sense_intronic MGP_CASTEiJ_T0060025.1 MGP_CASTEiJ_G0026242.1 mouse_genomes_project 3 11410492 11657883 + MGP_CASTEiJ_P0060025 Ralyl protein_coding protein_coding MGP_CASTEiJ_T0060026.1 MGP_CASTEiJ_G0026242.1 mouse_genomes_project 3 11410503 11658735 + MGP_CASTEiJ_P0060026 Ralyl protein_coding protein_coding MGP_CASTEiJ_T0060027.1 MGP_CASTEiJ_G0026242.1 mouse_genomes_project 3 11410510 11659042 + MGP_CASTEiJ_P0060027 Ralyl protein_coding protein_coding MGP_CASTEiJ_T0013491.1 MGP_CASTEiJ_G0011654.1 mouse_genomes_project 3 8420131 8420903 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063621.1 MGP_CASTEiJ_G0027019.1 mouse_genomes_project 3 128770246 128845980 + MGP_CASTEiJ_P0063621 Zgrf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063622.1 MGP_CASTEiJ_G0027019.1 mouse_genomes_project 3 128770246 128845985 + MGP_CASTEiJ_P0063622 Zgrf1 protein_coding protein_coding MGP_CASTEiJ_T0063623.1 MGP_CASTEiJ_G0027019.1 mouse_genomes_project 3 128770259 128845099 + MGP_CASTEiJ_P0063623 Zgrf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063624.1 MGP_CASTEiJ_G0027019.1 mouse_genomes_project 3 128770259 128845988 + MGP_CASTEiJ_P0063624 Zgrf1 protein_coding protein_coding MGP_CASTEiJ_T0063625.1 MGP_CASTEiJ_G0027019.1 mouse_genomes_project 3 128770390 128784104 + MGP_CASTEiJ_P0063625 Zgrf1 protein_coding protein_coding MGP_CASTEiJ_T0063626.1 MGP_CASTEiJ_G0027019.1 mouse_genomes_project 3 128806963 128844951 + MGP_CASTEiJ_P0063626 Zgrf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063627.1 MGP_CASTEiJ_G0027019.1 mouse_genomes_project 3 128818512 128825285 + Zgrf1 protein_coding retained_intron MGP_CASTEiJ_T0013929.1 MGP_CASTEiJ_G0012092.1 mouse_genomes_project 3 162402087 162402309 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062433.1 MGP_CASTEiJ_G0026750.1 mouse_genomes_project 3 95376379 95376978 - Mrps21 protein_coding processed_transcript MGP_CASTEiJ_T0062434.1 MGP_CASTEiJ_G0026750.1 mouse_genomes_project 3 95376379 95385052 - MGP_CASTEiJ_P0062434 Mrps21 protein_coding protein_coding MGP_CASTEiJ_T0062435.1 MGP_CASTEiJ_G0026750.1 mouse_genomes_project 3 95376379 95384152 - MGP_CASTEiJ_P0062435 Mrps21 protein_coding protein_coding MGP_CASTEiJ_T0062436.1 MGP_CASTEiJ_G0026750.1 mouse_genomes_project 3 95376554 95384900 - MGP_CASTEiJ_P0062436 Mrps21 protein_coding protein_coding MGP_CASTEiJ_T0007552.1 MGP_CASTEiJ_G0006195.1 mouse_genomes_project 3 145720224 145741570 + Gm42703 lincRNA lincRNA MGP_CASTEiJ_T0100946.1 MGP_CASTEiJ_G0037859.1 mouse_genomes_project 3 30964046 30964189 - Gm24780 snoRNA snoRNA MGP_CASTEiJ_T0099709.1 MGP_CASTEiJ_G0036622.1 mouse_genomes_project 3 78439769 78439873 + Gm24150 snRNA snRNA MGP_CASTEiJ_T0101582.1 MGP_CASTEiJ_G0038453.1 mouse_genomes_project 3 64260499 64285397 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101583.1 MGP_CASTEiJ_G0038453.1 mouse_genomes_project 3 64261885 64262358 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101584.1 MGP_CASTEiJ_G0038453.1 mouse_genomes_project 3 64271855 64287634 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101585.1 MGP_CASTEiJ_G0038453.1 mouse_genomes_project 3 64284707 64287476 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101586.1 MGP_CASTEiJ_G0038453.1 mouse_genomes_project 3 64284734 64287642 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0063490.1 MGP_CASTEiJ_G0026998.1 mouse_genomes_project 3 123697648 123838975 + MGP_CASTEiJ_P0063490 Pde5a protein_coding protein_coding MGP_CASTEiJ_T0063491.1 MGP_CASTEiJ_G0026998.1 mouse_genomes_project 3 123698271 123838973 + MGP_CASTEiJ_P0063491 Pde5a protein_coding protein_coding MGP_CASTEiJ_T0063492.1 MGP_CASTEiJ_G0026998.1 mouse_genomes_project 3 123698924 123749510 + Pde5a protein_coding retained_intron MGP_CASTEiJ_T0013876.1 MGP_CASTEiJ_G0012039.1 mouse_genomes_project 3 137644109 137644409 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063542.1 MGP_CASTEiJ_G0027009.1 mouse_genomes_project 3 125407415 125433612 - MGP_CASTEiJ_P0063542 1700006A11Rik protein_coding protein_coding MGP_CASTEiJ_T0063543.1 MGP_CASTEiJ_G0027009.1 mouse_genomes_project 3 125407650 125433563 - MGP_CASTEiJ_P0063543 1700006A11Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063050.1 MGP_CASTEiJ_G0026909.1 mouse_genomes_project 3 107942199 107952742 + MGP_CASTEiJ_P0063050 Alx3 protein_coding protein_coding MGP_CASTEiJ_T0007429.1 MGP_CASTEiJ_G0006090.1 mouse_genomes_project 3 91363144 91370704 + Gm43740 lincRNA lincRNA MGP_CASTEiJ_T0007517.1 MGP_CASTEiJ_G0006162.1 mouse_genomes_project 3 133236254 133520431 + lincRNA lincRNA MGP_CASTEiJ_T0013473.1 MGP_CASTEiJ_G0011636.1 mouse_genomes_project 3 4612707 4612827 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060829.1 MGP_CASTEiJ_G0026392.1 mouse_genomes_project 3 53966132 53976358 - MGP_CASTEiJ_P0060829 Gm21954 protein_coding protein_coding MGP_CASTEiJ_T0060926.1 MGP_CASTEiJ_G0026417.1 mouse_genomes_project 3 58502132 58519241 + protein_coding unprocessed_pseudogene MGP_CASTEiJ_T0061270.1 MGP_CASTEiJ_G0026493.1 mouse_genomes_project 3 82306927 82347894 - MGP_CASTEiJ_P0061270 Rbm46 protein_coding protein_coding MGP_CASTEiJ_T0061271.1 MGP_CASTEiJ_G0026493.1 mouse_genomes_project 3 82307514 82338142 - MGP_CASTEiJ_P0061271 Rbm46 protein_coding protein_coding MGP_CASTEiJ_T0061272.1 MGP_CASTEiJ_G0026493.1 mouse_genomes_project 3 82307517 82338142 - MGP_CASTEiJ_P0061272 Rbm46 protein_coding protein_coding MGP_CASTEiJ_T0013537.1 MGP_CASTEiJ_G0011700.1 mouse_genomes_project 3 22410096 22410276 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007426.1 MGP_CASTEiJ_G0006088.1 mouse_genomes_project 3 89950477 89953028 + Gm19710 lincRNA lincRNA MGP_CASTEiJ_T0007427.1 MGP_CASTEiJ_G0006088.1 mouse_genomes_project 3 89952819 89973161 + Gm19710 lincRNA lincRNA MGP_CASTEiJ_T0102290.1 MGP_CASTEiJ_G0039015.1 mouse_genomes_project 3 98505841 98507788 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0001157.1 MGP_CASTEiJ_G0001088.1 mouse_genomes_project 3 50599068 50602188 + TEC TEC MGP_CASTEiJ_T0013632.1 MGP_CASTEiJ_G0011795.1 mouse_genomes_project 3 58103306 58108082 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098923.1 MGP_CASTEiJ_G0035847.1 mouse_genomes_project 3 104802494 104804235 - Gm42659 sense_intronic sense_intronic MGP_CASTEiJ_T0013862.1 MGP_CASTEiJ_G0012025.1 mouse_genomes_project 3 134395451 134397648 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061831.1 MGP_CASTEiJ_G0026600.1 mouse_genomes_project 3 89323414 89331152 + MGP_CASTEiJ_P0061831 Shc1 protein_coding protein_coding MGP_CASTEiJ_T0061832.1 MGP_CASTEiJ_G0026600.1 mouse_genomes_project 3 89327541 89330950 + Shc1 protein_coding retained_intron MGP_CASTEiJ_T0061833.1 MGP_CASTEiJ_G0026600.1 mouse_genomes_project 3 89328536 89336000 + MGP_CASTEiJ_P0061833 Shc1 protein_coding protein_coding MGP_CASTEiJ_T0061834.1 MGP_CASTEiJ_G0026600.1 mouse_genomes_project 3 89331433 89334262 + Shc1 protein_coding processed_transcript MGP_CASTEiJ_T0013870.1 MGP_CASTEiJ_G0012033.1 mouse_genomes_project 3 136574860 136575367 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013843.1 MGP_CASTEiJ_G0012006.1 mouse_genomes_project 3 125609361 125610007 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007587.1 MGP_CASTEiJ_G0006219.1 mouse_genomes_project 3 153940688 153945021 + Gm42949 lincRNA lincRNA MGP_CASTEiJ_T0101595.1 MGP_CASTEiJ_G0038458.1 mouse_genomes_project 3 125288605 125289035 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101009.1 MGP_CASTEiJ_G0037922.1 mouse_genomes_project 3 156681661 156681742 - Gm24494 snoRNA snoRNA MGP_CASTEiJ_T0004288.1 MGP_CASTEiJ_G0003746.1 mouse_genomes_project 3 161013688 161022870 - B230334C09Rik antisense antisense MGP_CASTEiJ_T0062845.1 MGP_CASTEiJ_G0026858.1 mouse_genomes_project 3 103720236 103751863 + MGP_CASTEiJ_P0062845 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013467.1 MGP_CASTEiJ_G0011630.1 mouse_genomes_project 3 2070022 2070989 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013712.1 MGP_CASTEiJ_G0011875.1 mouse_genomes_project 3 85891101 85892728 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060549.1 MGP_CASTEiJ_G0026342.1 mouse_genomes_project 3 35468409 35475405 - protein_coding processed_transcript MGP_CASTEiJ_T0007545.1 MGP_CASTEiJ_G0006189.1 mouse_genomes_project 3 145344629 145360338 + A830019L24Rik lincRNA lincRNA MGP_CASTEiJ_T0007546.1 MGP_CASTEiJ_G0006189.1 mouse_genomes_project 3 145345103 145362227 + A830019L24Rik lincRNA lincRNA MGP_CASTEiJ_T0064139.1 MGP_CASTEiJ_G0027116.1 mouse_genomes_project 3 148035173 148044177 + MGP_CASTEiJ_P0064139 Ddah1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064140.1 MGP_CASTEiJ_G0027116.1 mouse_genomes_project 3 148035239 148178061 + MGP_CASTEiJ_P0064140 Ddah1 protein_coding protein_coding MGP_CASTEiJ_T0064141.1 MGP_CASTEiJ_G0027116.1 mouse_genomes_project 3 148096221 148173169 + Ddah1 protein_coding processed_transcript MGP_CASTEiJ_T0004103.1 MGP_CASTEiJ_G0003618.1 mouse_genomes_project 3 35056769 35072434 - Fgf2os antisense antisense MGP_CASTEiJ_T0010241.1 MGP_CASTEiJ_G0008429.1 mouse_genomes_project 3 89113850 89113933 - Mir92b miRNA miRNA MGP_CASTEiJ_T0061089.1 MGP_CASTEiJ_G0026454.1 mouse_genomes_project 3 67692248 67800769 - Ift80 protein_coding retained_intron MGP_CASTEiJ_T0061090.1 MGP_CASTEiJ_G0026454.1 mouse_genomes_project 3 67692248 67800753 - MGP_CASTEiJ_P0061090 Ift80 protein_coding protein_coding MGP_CASTEiJ_T0061091.1 MGP_CASTEiJ_G0026454.1 mouse_genomes_project 3 67692275 67789892 - MGP_CASTEiJ_P0061091 Ift80 protein_coding protein_coding MGP_CASTEiJ_T0061092.1 MGP_CASTEiJ_G0026454.1 mouse_genomes_project 3 67692275 67800780 - MGP_CASTEiJ_P0061092 Ift80 protein_coding protein_coding MGP_CASTEiJ_T0061093.1 MGP_CASTEiJ_G0026454.1 mouse_genomes_project 3 67693392 67714832 - Ift80 protein_coding retained_intron MGP_CASTEiJ_T0061094.1 MGP_CASTEiJ_G0026454.1 mouse_genomes_project 3 67709919 67710268 - Ift80 protein_coding retained_intron MGP_CASTEiJ_T0061095.1 MGP_CASTEiJ_G0026454.1 mouse_genomes_project 3 67712603 67800709 - Ift80 protein_coding retained_intron MGP_CASTEiJ_T0061096.1 MGP_CASTEiJ_G0026454.1 mouse_genomes_project 3 67730870 67768454 - Ift80 protein_coding processed_transcript MGP_CASTEiJ_T0061097.1 MGP_CASTEiJ_G0026454.1 mouse_genomes_project 3 67757153 67800688 - MGP_CASTEiJ_P0061097 Ift80 protein_coding protein_coding MGP_CASTEiJ_T0061098.1 MGP_CASTEiJ_G0026454.1 mouse_genomes_project 3 67762584 67800695 - MGP_CASTEiJ_P0061098 Ift80 protein_coding protein_coding MGP_CASTEiJ_T0061099.1 MGP_CASTEiJ_G0026454.1 mouse_genomes_project 3 67768012 67800599 - Ift80 protein_coding processed_transcript MGP_CASTEiJ_T0061100.1 MGP_CASTEiJ_G0026454.1 mouse_genomes_project 3 67798506 67800736 - Ift80 protein_coding retained_intron MGP_CASTEiJ_T0062118.1 MGP_CASTEiJ_G0026694.1 mouse_genomes_project 3 92779535 92787131 + MGP_CASTEiJ_P0062118 Tchh protein_coding protein_coding MGP_CASTEiJ_T0013637.1 MGP_CASTEiJ_G0011800.1 mouse_genomes_project 3 59039726 59040462 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001244.1 MGP_CASTEiJ_G0001175.1 mouse_genomes_project 3 119271220 119274800 + TEC TEC MGP_CASTEiJ_T0004143.1 MGP_CASTEiJ_G0003650.1 mouse_genomes_project 3 87906138 87912942 - 1700113A16Rik antisense antisense MGP_CASTEiJ_T0004144.1 MGP_CASTEiJ_G0003650.1 mouse_genomes_project 3 87906138 87912849 - 1700113A16Rik antisense antisense MGP_CASTEiJ_T0004145.1 MGP_CASTEiJ_G0003650.1 mouse_genomes_project 3 87906590 87912863 - 1700113A16Rik antisense antisense MGP_CASTEiJ_T0017259.1 MGP_CASTEiJ_G0014839.1 mouse_genomes_project 3 123733635 123774869 - 4930447N08Rik processed_transcript antisense MGP_CASTEiJ_T0017260.1 MGP_CASTEiJ_G0014839.1 mouse_genomes_project 3 123741556 123774967 - 4930447N08Rik processed_transcript retained_intron MGP_CASTEiJ_T0017261.1 MGP_CASTEiJ_G0014839.1 mouse_genomes_project 3 123767965 123774814 - 4930447N08Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017262.1 MGP_CASTEiJ_G0014839.1 mouse_genomes_project 3 123767972 123774901 - 4930447N08Rik processed_transcript antisense MGP_CASTEiJ_T0007372.1 MGP_CASTEiJ_G0006050.1 mouse_genomes_project 3 59521797 59528173 + Gm38326 lincRNA lincRNA MGP_CASTEiJ_T0007360.1 MGP_CASTEiJ_G0006043.1 mouse_genomes_project 3 52143480 52161952 + C820005J03Rik lincRNA lincRNA MGP_CASTEiJ_T0004186.1 MGP_CASTEiJ_G0003680.1 mouse_genomes_project 3 101197894 101198933 - Gm42538 antisense antisense MGP_CASTEiJ_T0004187.1 MGP_CASTEiJ_G0003680.1 mouse_genomes_project 3 101198553 101200224 - Gm42538 antisense antisense MGP_CASTEiJ_T0101778.1 MGP_CASTEiJ_G0038561.1 mouse_genomes_project 3 140112081 140120816 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101779.1 MGP_CASTEiJ_G0038561.1 mouse_genomes_project 3 140114260 140127947 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0101780.1 MGP_CASTEiJ_G0038561.1 mouse_genomes_project 3 140122523 140129023 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0061209.1 MGP_CASTEiJ_G0026479.1 mouse_genomes_project 3 78908841 78914733 + MGP_CASTEiJ_P0061209 4930579G24Rik protein_coding protein_coding MGP_CASTEiJ_T0099701.1 MGP_CASTEiJ_G0036614.1 mouse_genomes_project 3 58802816 58802922 - Gm24382 snRNA snRNA MGP_CASTEiJ_T0013585.1 MGP_CASTEiJ_G0011748.1 mouse_genomes_project 3 41220447 41221611 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007561.1 MGP_CASTEiJ_G0006202.1 mouse_genomes_project 3 146229658 146268018 - Gm42709 lincRNA lincRNA MGP_CASTEiJ_T0013721.1 MGP_CASTEiJ_G0011884.1 mouse_genomes_project 3 88992456 88992709 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013519.1 MGP_CASTEiJ_G0011682.1 mouse_genomes_project 3 15962723 15963012 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013506.1 MGP_CASTEiJ_G0011669.1 mouse_genomes_project 3 12412687 12413674 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013594.1 MGP_CASTEiJ_G0011757.1 mouse_genomes_project 3 44621387 44621629 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004179.1 MGP_CASTEiJ_G0003675.1 mouse_genomes_project 3 96404812 96407083 - 4930442L01Rik antisense antisense MGP_CASTEiJ_T0098931.1 MGP_CASTEiJ_G0035855.1 mouse_genomes_project 3 120572071 120575307 - Gm42664 sense_intronic sense_intronic MGP_CASTEiJ_T0062189.1 MGP_CASTEiJ_G0026712.1 mouse_genomes_project 3 94252492 94302085 + MGP_CASTEiJ_P0062189 Pogz protein_coding protein_coding MGP_CASTEiJ_T0062190.1 MGP_CASTEiJ_G0026712.1 mouse_genomes_project 3 94252622 94277969 + Pogz protein_coding processed_transcript MGP_CASTEiJ_T0062191.1 MGP_CASTEiJ_G0026712.1 mouse_genomes_project 3 94252638 94284699 + Pogz protein_coding retained_intron MGP_CASTEiJ_T0062192.1 MGP_CASTEiJ_G0026712.1 mouse_genomes_project 3 94252638 94300090 + MGP_CASTEiJ_P0062192 Pogz protein_coding protein_coding MGP_CASTEiJ_T0062193.1 MGP_CASTEiJ_G0026712.1 mouse_genomes_project 3 94252638 94300633 + MGP_CASTEiJ_P0062193 Pogz protein_coding protein_coding MGP_CASTEiJ_T0062194.1 MGP_CASTEiJ_G0026712.1 mouse_genomes_project 3 94252638 94302083 + MGP_CASTEiJ_P0062194 Pogz protein_coding protein_coding MGP_CASTEiJ_T0062195.1 MGP_CASTEiJ_G0026712.1 mouse_genomes_project 3 94280118 94280941 + Pogz protein_coding retained_intron MGP_CASTEiJ_T0062196.1 MGP_CASTEiJ_G0026712.1 mouse_genomes_project 3 94280909 94291845 + MGP_CASTEiJ_P0062196 Pogz protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062197.1 MGP_CASTEiJ_G0026712.1 mouse_genomes_project 3 94290850 94293317 + Pogz protein_coding processed_transcript MGP_CASTEiJ_T0062198.1 MGP_CASTEiJ_G0026712.1 mouse_genomes_project 3 94297412 94298724 + Pogz protein_coding retained_intron MGP_CASTEiJ_T0099721.1 MGP_CASTEiJ_G0036634.1 mouse_genomes_project 3 89084789 89084896 - Gm23269 snRNA snRNA MGP_CASTEiJ_T0062280.1 MGP_CASTEiJ_G0026727.1 mouse_genomes_project 3 94611370 94615456 + Sema6c protein_coding processed_transcript MGP_CASTEiJ_T0062281.1 MGP_CASTEiJ_G0026727.1 mouse_genomes_project 3 94611407 94615341 + Sema6c protein_coding processed_transcript MGP_CASTEiJ_T0062282.1 MGP_CASTEiJ_G0026727.1 mouse_genomes_project 3 94611407 94619274 + MGP_CASTEiJ_P0062282 Sema6c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062283.1 MGP_CASTEiJ_G0026727.1 mouse_genomes_project 3 94611407 94624594 + MGP_CASTEiJ_P0062283 Sema6c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062284.1 MGP_CASTEiJ_G0026727.1 mouse_genomes_project 3 94611414 94615395 + MGP_CASTEiJ_P0062284 Sema6c protein_coding protein_coding MGP_CASTEiJ_T0062285.1 MGP_CASTEiJ_G0026727.1 mouse_genomes_project 3 94611418 94624965 + Sema6c protein_coding retained_intron MGP_CASTEiJ_T0062286.1 MGP_CASTEiJ_G0026727.1 mouse_genomes_project 3 94611418 94624965 + MGP_CASTEiJ_P0062286 Sema6c protein_coding protein_coding MGP_CASTEiJ_T0062287.1 MGP_CASTEiJ_G0026727.1 mouse_genomes_project 3 94611418 94624965 + MGP_CASTEiJ_P0062287 Sema6c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062288.1 MGP_CASTEiJ_G0026727.1 mouse_genomes_project 3 94611418 94624965 + MGP_CASTEiJ_P0062288 Sema6c protein_coding protein_coding MGP_CASTEiJ_T0062289.1 MGP_CASTEiJ_G0026727.1 mouse_genomes_project 3 94615218 94624803 + MGP_CASTEiJ_P0062289 Sema6c protein_coding protein_coding MGP_CASTEiJ_T0062290.1 MGP_CASTEiJ_G0026727.1 mouse_genomes_project 3 94615218 94624965 + MGP_CASTEiJ_P0062290 Sema6c protein_coding protein_coding MGP_CASTEiJ_T0062291.1 MGP_CASTEiJ_G0026727.1 mouse_genomes_project 3 94615287 94624257 + MGP_CASTEiJ_P0062291 Sema6c protein_coding protein_coding MGP_CASTEiJ_T0062292.1 MGP_CASTEiJ_G0026727.1 mouse_genomes_project 3 94619139 94621079 + Sema6c protein_coding processed_transcript MGP_CASTEiJ_T0062293.1 MGP_CASTEiJ_G0026727.1 mouse_genomes_project 3 94621261 94622836 + Sema6c protein_coding retained_intron MGP_CASTEiJ_T0062294.1 MGP_CASTEiJ_G0026727.1 mouse_genomes_project 3 94621743 94622917 + Sema6c protein_coding retained_intron MGP_CASTEiJ_T0062370.1 MGP_CASTEiJ_G0026742.1 mouse_genomes_project 3 95069894 95103845 + MGP_CASTEiJ_P0062370 Golph3l protein_coding protein_coding MGP_CASTEiJ_T0062371.1 MGP_CASTEiJ_G0026742.1 mouse_genomes_project 3 95069894 95103845 + MGP_CASTEiJ_P0062371 Golph3l protein_coding protein_coding MGP_CASTEiJ_T0062372.1 MGP_CASTEiJ_G0026742.1 mouse_genomes_project 3 95069894 95103840 + MGP_CASTEiJ_P0062372 Golph3l protein_coding protein_coding MGP_CASTEiJ_T0062373.1 MGP_CASTEiJ_G0026742.1 mouse_genomes_project 3 95069929 95103839 + MGP_CASTEiJ_P0062373 Golph3l protein_coding protein_coding MGP_CASTEiJ_T0062374.1 MGP_CASTEiJ_G0026742.1 mouse_genomes_project 3 95069929 95102162 + MGP_CASTEiJ_P0062374 Golph3l protein_coding protein_coding MGP_CASTEiJ_T0062375.1 MGP_CASTEiJ_G0026742.1 mouse_genomes_project 3 95069934 95103838 + MGP_CASTEiJ_P0062375 Golph3l protein_coding protein_coding MGP_CASTEiJ_T0062376.1 MGP_CASTEiJ_G0026742.1 mouse_genomes_project 3 95069941 95103839 + MGP_CASTEiJ_P0062376 Golph3l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062377.1 MGP_CASTEiJ_G0026742.1 mouse_genomes_project 3 95069950 95102093 + MGP_CASTEiJ_P0062377 Golph3l protein_coding protein_coding MGP_CASTEiJ_T0060510.1 MGP_CASTEiJ_G0026335.1 mouse_genomes_project 3 34941056 34952980 - MGP_CASTEiJ_P0060510 Il21 protein_coding protein_coding MGP_CASTEiJ_T0060511.1 MGP_CASTEiJ_G0026335.1 mouse_genomes_project 3 34945157 34952927 - MGP_CASTEiJ_P0060511 Il21 protein_coding protein_coding MGP_CASTEiJ_T0060512.1 MGP_CASTEiJ_G0026335.1 mouse_genomes_project 3 34950059 34952998 - Il21 protein_coding retained_intron MGP_CASTEiJ_T0001193.1 MGP_CASTEiJ_G0001124.1 mouse_genomes_project 3 74773085 74773600 - TEC TEC MGP_CASTEiJ_T0061367.1 MGP_CASTEiJ_G0026519.1 mouse_genomes_project 3 86183193 86185812 - MGP_CASTEiJ_P0061367 Mab21l2 protein_coding protein_coding MGP_CASTEiJ_T0061368.1 MGP_CASTEiJ_G0026519.1 mouse_genomes_project 3 86183579 86186158 - Mab21l2 protein_coding processed_pseudogene MGP_CASTEiJ_T0007268.1 MGP_CASTEiJ_G0005974.1 mouse_genomes_project 3 7360061 7362849 - Gm38335 lincRNA lincRNA MGP_CASTEiJ_T0013507.1 MGP_CASTEiJ_G0011670.1 mouse_genomes_project 3 13159513 13160604 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013811.1 MGP_CASTEiJ_G0011974.1 mouse_genomes_project 3 115038547 115038899 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004120.1 MGP_CASTEiJ_G0003632.1 mouse_genomes_project 3 57613588 57617281 - Gm43570 antisense antisense MGP_CASTEiJ_T0010253.1 MGP_CASTEiJ_G0008441.1 mouse_genomes_project 3 103571812 103571898 - Gm25325 miRNA miRNA MGP_CASTEiJ_T0013705.1 MGP_CASTEiJ_G0011868.1 mouse_genomes_project 3 82124106 82124686 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062079.1 MGP_CASTEiJ_G0026665.1 mouse_genomes_project 3 91850165 91852522 - MGP_CASTEiJ_P0062079 Smcp protein_coding protein_coding MGP_CASTEiJ_T0062080.1 MGP_CASTEiJ_G0026665.1 mouse_genomes_project 3 91850165 91858074 - MGP_CASTEiJ_P0062080 Smcp protein_coding protein_coding MGP_CASTEiJ_T0017215.1 MGP_CASTEiJ_G0014822.1 mouse_genomes_project 3 82110259 82113129 - Gm29999 processed_transcript retained_intron MGP_CASTEiJ_T0017216.1 MGP_CASTEiJ_G0014822.1 mouse_genomes_project 3 82110405 82114744 - Gm29999 processed_transcript lincRNA MGP_CASTEiJ_T0102270.1 MGP_CASTEiJ_G0038995.1 mouse_genomes_project 3 63648605 63649181 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0001217.1 MGP_CASTEiJ_G0001148.1 mouse_genomes_project 3 96012818 96015683 - TEC TEC MGP_CASTEiJ_T0063114.1 MGP_CASTEiJ_G0026924.1 mouse_genomes_project 3 108472714 108519029 - MGP_CASTEiJ_P0063114 Gnai3 protein_coding protein_coding MGP_CASTEiJ_T0062046.1 MGP_CASTEiJ_G0026639.1 mouse_genomes_project 3 90679558 90684725 + MGP_CASTEiJ_P0062046 S100a7a protein_coding protein_coding MGP_CASTEiJ_T0013663.1 MGP_CASTEiJ_G0011826.1 mouse_genomes_project 3 66534803 66536132 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004118.1 MGP_CASTEiJ_G0003631.1 mouse_genomes_project 3 54407515 54449220 + Gm43376 antisense antisense MGP_CASTEiJ_T0004119.1 MGP_CASTEiJ_G0003631.1 mouse_genomes_project 3 54407586 54409473 + Gm43376 antisense antisense MGP_CASTEiJ_T0060959.1 MGP_CASTEiJ_G0026425.1 mouse_genomes_project 3 60102575 60107016 - MGP_CASTEiJ_P0060959 B430305J03Rik protein_coding protein_coding MGP_CASTEiJ_T0062939.1 MGP_CASTEiJ_G0026877.1 mouse_genomes_project 3 105716636 105735898 + MGP_CASTEiJ_P0062939 Fam212b protein_coding protein_coding MGP_CASTEiJ_T0062940.1 MGP_CASTEiJ_G0026877.1 mouse_genomes_project 3 105717496 105733169 + MGP_CASTEiJ_P0062940 Fam212b protein_coding protein_coding MGP_CASTEiJ_T0100949.1 MGP_CASTEiJ_G0037862.1 mouse_genomes_project 3 35775397 35775528 - Gm22899 snoRNA snoRNA MGP_CASTEiJ_T0061965.1 MGP_CASTEiJ_G0026621.1 mouse_genomes_project 3 90247806 90263164 + MGP_CASTEiJ_P0061965 Dennd4b protein_coding protein_coding MGP_CASTEiJ_T0061966.1 MGP_CASTEiJ_G0026621.1 mouse_genomes_project 3 90249013 90263164 + MGP_CASTEiJ_P0061966 Dennd4b protein_coding protein_coding MGP_CASTEiJ_T0061967.1 MGP_CASTEiJ_G0026621.1 mouse_genomes_project 3 90249964 90258136 + MGP_CASTEiJ_P0061967 Dennd4b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061968.1 MGP_CASTEiJ_G0026621.1 mouse_genomes_project 3 90251530 90254207 + MGP_CASTEiJ_P0061968 Dennd4b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061969.1 MGP_CASTEiJ_G0026621.1 mouse_genomes_project 3 90257965 90259970 + MGP_CASTEiJ_P0061969 Dennd4b protein_coding protein_coding MGP_CASTEiJ_T0061970.1 MGP_CASTEiJ_G0026621.1 mouse_genomes_project 3 90259894 90260837 + Dennd4b protein_coding retained_intron MGP_CASTEiJ_T0061971.1 MGP_CASTEiJ_G0026621.1 mouse_genomes_project 3 90260501 90261164 + Dennd4b protein_coding retained_intron MGP_CASTEiJ_T0001284.1 MGP_CASTEiJ_G0001215.1 mouse_genomes_project 3 128965706 128968108 - TEC TEC MGP_CASTEiJ_T0013551.1 MGP_CASTEiJ_G0011714.1 mouse_genomes_project 3 31247547 31247905 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063057.1 MGP_CASTEiJ_G0026912.1 mouse_genomes_project 3 108005216 108023319 - MGP_CASTEiJ_P0063057 Ahcyl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063058.1 MGP_CASTEiJ_G0026912.1 mouse_genomes_project 3 108005218 108042550 - MGP_CASTEiJ_P0063058 Ahcyl1 protein_coding protein_coding MGP_CASTEiJ_T0063059.1 MGP_CASTEiJ_G0026912.1 mouse_genomes_project 3 108006051 108007695 - Ahcyl1 protein_coding processed_transcript MGP_CASTEiJ_T0063060.1 MGP_CASTEiJ_G0026912.1 mouse_genomes_project 3 108006581 108012673 - Ahcyl1 protein_coding retained_intron MGP_CASTEiJ_T0063061.1 MGP_CASTEiJ_G0026912.1 mouse_genomes_project 3 108007490 108009582 - Ahcyl1 protein_coding retained_intron MGP_CASTEiJ_T0063062.1 MGP_CASTEiJ_G0026912.1 mouse_genomes_project 3 108010348 108011608 - Ahcyl1 protein_coding retained_intron MGP_CASTEiJ_T0063063.1 MGP_CASTEiJ_G0026912.1 mouse_genomes_project 3 108013246 108041953 - MGP_CASTEiJ_P0063063 Ahcyl1 protein_coding protein_coding MGP_CASTEiJ_T0063064.1 MGP_CASTEiJ_G0026912.1 mouse_genomes_project 3 108013834 108042495 - Ahcyl1 protein_coding retained_intron MGP_CASTEiJ_T0062085.1 MGP_CASTEiJ_G0026669.1 mouse_genomes_project 3 91922981 91926159 - MGP_CASTEiJ_P0062085 Lce1a1 protein_coding protein_coding MGP_CASTEiJ_T0060772.1 MGP_CASTEiJ_G0026381.1 mouse_genomes_project 3 53176381 53177556 - MGP_CASTEiJ_P0060772 Gm21958 protein_coding protein_coding MGP_CASTEiJ_T0013522.1 MGP_CASTEiJ_G0011685.1 mouse_genomes_project 3 16934099 16935151 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001205.1 MGP_CASTEiJ_G0001136.1 mouse_genomes_project 3 85494428 85495961 + TEC TEC MGP_CASTEiJ_T0061780.1 MGP_CASTEiJ_G0026589.1 mouse_genomes_project 3 89158006 89160287 - Slc50a1 protein_coding retained_intron MGP_CASTEiJ_T0061781.1 MGP_CASTEiJ_G0026589.1 mouse_genomes_project 3 89158006 89160284 - Slc50a1 protein_coding retained_intron MGP_CASTEiJ_T0061782.1 MGP_CASTEiJ_G0026589.1 mouse_genomes_project 3 89158006 89160256 - MGP_CASTEiJ_P0061782 Slc50a1 protein_coding protein_coding MGP_CASTEiJ_T0061783.1 MGP_CASTEiJ_G0026589.1 mouse_genomes_project 3 89158006 89160331 - MGP_CASTEiJ_P0061783 Slc50a1 protein_coding protein_coding MGP_CASTEiJ_T0061784.1 MGP_CASTEiJ_G0026589.1 mouse_genomes_project 3 89158006 89160240 - MGP_CASTEiJ_P0061784 Slc50a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061785.1 MGP_CASTEiJ_G0026589.1 mouse_genomes_project 3 89158008 89160286 - Slc50a1 protein_coding retained_intron MGP_CASTEiJ_T0061786.1 MGP_CASTEiJ_G0026589.1 mouse_genomes_project 3 89158008 89160330 - Slc50a1 protein_coding retained_intron MGP_CASTEiJ_T0061787.1 MGP_CASTEiJ_G0026589.1 mouse_genomes_project 3 89158831 89160331 - MGP_CASTEiJ_P0061787 Slc50a1 protein_coding protein_coding MGP_CASTEiJ_T0061788.1 MGP_CASTEiJ_G0026589.1 mouse_genomes_project 3 89158905 89159988 - Slc50a1 protein_coding processed_transcript MGP_CASTEiJ_T0001293.1 MGP_CASTEiJ_G0001223.1 mouse_genomes_project 3 130974977 130976639 + TEC TEC MGP_CASTEiJ_T0017245.1 MGP_CASTEiJ_G0014836.1 mouse_genomes_project 3 116421326 116428328 - A930005H10Rik processed_transcript antisense MGP_CASTEiJ_T0017246.1 MGP_CASTEiJ_G0014836.1 mouse_genomes_project 3 116421326 116428364 - A930005H10Rik processed_transcript antisense MGP_CASTEiJ_T0017247.1 MGP_CASTEiJ_G0014836.1 mouse_genomes_project 3 116421328 116428187 - A930005H10Rik processed_transcript antisense MGP_CASTEiJ_T0017248.1 MGP_CASTEiJ_G0014836.1 mouse_genomes_project 3 116421531 116428338 - A930005H10Rik processed_transcript antisense MGP_CASTEiJ_T0017249.1 MGP_CASTEiJ_G0014836.1 mouse_genomes_project 3 116426248 116428331 - A930005H10Rik processed_transcript retained_intron MGP_CASTEiJ_T0017250.1 MGP_CASTEiJ_G0014836.1 mouse_genomes_project 3 116426347 116428122 - A930005H10Rik processed_transcript retained_intron MGP_CASTEiJ_T0017251.1 MGP_CASTEiJ_G0014836.1 mouse_genomes_project 3 116428056 116428364 - A930005H10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0013661.1 MGP_CASTEiJ_G0011824.1 mouse_genomes_project 3 65721347 65721669 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001148.1 MGP_CASTEiJ_G0001080.1 mouse_genomes_project 3 50159483 50162334 - TEC TEC MGP_CASTEiJ_T0098888.1 MGP_CASTEiJ_G0035812.1 mouse_genomes_project 3 100305601 100310828 - Gm43466 sense_intronic sense_intronic MGP_CASTEiJ_T0001173.1 MGP_CASTEiJ_G0001104.1 mouse_genomes_project 3 56193360 56194524 - TEC TEC MGP_CASTEiJ_T0001351.1 MGP_CASTEiJ_G0001281.1 mouse_genomes_project 3 161450895 161451919 + TEC TEC MGP_CASTEiJ_T0061218.1 MGP_CASTEiJ_G0026482.1 mouse_genomes_project 3 79168965 79232180 + MGP_CASTEiJ_P0061218 Fam198b protein_coding protein_coding MGP_CASTEiJ_T0061219.1 MGP_CASTEiJ_G0026482.1 mouse_genomes_project 3 79169029 79222638 + MGP_CASTEiJ_P0061219 Fam198b protein_coding protein_coding MGP_CASTEiJ_T0061220.1 MGP_CASTEiJ_G0026482.1 mouse_genomes_project 3 79169363 79172977 + MGP_CASTEiJ_P0061220 Fam198b protein_coding protein_coding MGP_CASTEiJ_T0061221.1 MGP_CASTEiJ_G0026482.1 mouse_genomes_project 3 79172663 79232178 + MGP_CASTEiJ_P0061221 Fam198b protein_coding protein_coding MGP_CASTEiJ_T0061222.1 MGP_CASTEiJ_G0026482.1 mouse_genomes_project 3 79172789 79176390 + Fam198b protein_coding retained_intron MGP_CASTEiJ_T0062467.1 MGP_CASTEiJ_G0026757.1 mouse_genomes_project 3 95535733 95594805 - MGP_CASTEiJ_P0062467 Vps45 protein_coding protein_coding MGP_CASTEiJ_T0062468.1 MGP_CASTEiJ_G0026757.1 mouse_genomes_project 3 95581479 95594169 - Vps45 protein_coding retained_intron MGP_CASTEiJ_T0062469.1 MGP_CASTEiJ_G0026757.1 mouse_genomes_project 3 95593225 95594058 - Vps45 protein_coding processed_transcript MGP_CASTEiJ_T0060886.1 MGP_CASTEiJ_G0026405.1 mouse_genomes_project 3 57163153 57182258 + MGP_CASTEiJ_P0060886 Selt protein_coding protein_coding MGP_CASTEiJ_T0060887.1 MGP_CASTEiJ_G0026405.1 mouse_genomes_project 3 57163166 57182675 + MGP_CASTEiJ_P0060887 Selt protein_coding unknown_likely_coding MGP_CASTEiJ_T0060888.1 MGP_CASTEiJ_G0026405.1 mouse_genomes_project 3 57163215 57177949 + Selt protein_coding retained_intron MGP_CASTEiJ_T0060476.1 MGP_CASTEiJ_G0026331.1 mouse_genomes_project 3 34306911 34380245 - MGP_CASTEiJ_P0060476 Trpc3 protein_coding protein_coding MGP_CASTEiJ_T0060477.1 MGP_CASTEiJ_G0026331.1 mouse_genomes_project 3 34306992 34307799 - Trpc3 protein_coding processed_transcript MGP_CASTEiJ_T0060478.1 MGP_CASTEiJ_G0026331.1 mouse_genomes_project 3 34306992 34307777 - Trpc3 protein_coding processed_transcript MGP_CASTEiJ_T0060479.1 MGP_CASTEiJ_G0026331.1 mouse_genomes_project 3 34326592 34328878 - Trpc3 protein_coding retained_intron MGP_CASTEiJ_T0060480.1 MGP_CASTEiJ_G0026331.1 mouse_genomes_project 3 34359366 34380245 - Trpc3 protein_coding retained_intron MGP_CASTEiJ_T0063791.1 MGP_CASTEiJ_G0027052.1 mouse_genomes_project 3 134656791 134683132 + MGP_CASTEiJ_P0063791 Ints12 protein_coding protein_coding MGP_CASTEiJ_T0063792.1 MGP_CASTEiJ_G0027052.1 mouse_genomes_project 3 134656889 134667015 + Ints12 protein_coding retained_intron MGP_CASTEiJ_T0063793.1 MGP_CASTEiJ_G0027052.1 mouse_genomes_project 3 134665306 134678437 + Ints12 protein_coding processed_transcript MGP_CASTEiJ_T0062992.1 MGP_CASTEiJ_G0026892.1 mouse_genomes_project 3 106800275 106847279 - MGP_CASTEiJ_P0062992 Cept1 protein_coding protein_coding MGP_CASTEiJ_T0062993.1 MGP_CASTEiJ_G0026892.1 mouse_genomes_project 3 106800998 106847208 - MGP_CASTEiJ_P0062993 Cept1 protein_coding protein_coding MGP_CASTEiJ_T0062994.1 MGP_CASTEiJ_G0026892.1 mouse_genomes_project 3 106800998 106847059 - MGP_CASTEiJ_P0062994 Cept1 protein_coding protein_coding MGP_CASTEiJ_T0062995.1 MGP_CASTEiJ_G0026892.1 mouse_genomes_project 3 106803269 106847176 - MGP_CASTEiJ_P0062995 Cept1 protein_coding protein_coding MGP_CASTEiJ_T0062996.1 MGP_CASTEiJ_G0026892.1 mouse_genomes_project 3 106819224 106847220 - MGP_CASTEiJ_P0062996 Cept1 protein_coding protein_coding MGP_CASTEiJ_T0062997.1 MGP_CASTEiJ_G0026892.1 mouse_genomes_project 3 106830845 106847195 - MGP_CASTEiJ_P0062997 Cept1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062998.1 MGP_CASTEiJ_G0026892.1 mouse_genomes_project 3 106838916 106847069 - MGP_CASTEiJ_P0062998 Cept1 protein_coding protein_coding MGP_CASTEiJ_T0060921.1 MGP_CASTEiJ_G0026415.1 mouse_genomes_project 3 57940059 57968720 - MGP_CASTEiJ_P0060921 Igsf10 protein_coding protein_coding MGP_CASTEiJ_T0060922.1 MGP_CASTEiJ_G0026415.1 mouse_genomes_project 3 57941249 57968623 - MGP_CASTEiJ_P0060922 Igsf10 protein_coding protein_coding MGP_CASTEiJ_T0060923.1 MGP_CASTEiJ_G0026415.1 mouse_genomes_project 3 57941249 57968858 - MGP_CASTEiJ_P0060923 Igsf10 protein_coding protein_coding MGP_CASTEiJ_T0060924.1 MGP_CASTEiJ_G0026415.1 mouse_genomes_project 3 57964234 57968720 - MGP_CASTEiJ_P0060924 Igsf10 protein_coding protein_coding MGP_CASTEiJ_T0001336.1 MGP_CASTEiJ_G0001266.1 mouse_genomes_project 3 157049840 157051818 - TEC TEC MGP_CASTEiJ_T0063494.1 MGP_CASTEiJ_G0027000.1 mouse_genomes_project 3 123908171 123911718 + MGP_CASTEiJ_P0063494 1810037I17Rik protein_coding protein_coding MGP_CASTEiJ_T0061751.1 MGP_CASTEiJ_G0026584.1 mouse_genomes_project 3 89100604 89113572 + MGP_CASTEiJ_P0061751 Thbs3 protein_coding protein_coding MGP_CASTEiJ_T0061752.1 MGP_CASTEiJ_G0026584.1 mouse_genomes_project 3 89100629 89104930 + MGP_CASTEiJ_P0061752 Thbs3 protein_coding protein_coding MGP_CASTEiJ_T0061753.1 MGP_CASTEiJ_G0026584.1 mouse_genomes_project 3 89100651 89113572 + Thbs3 protein_coding retained_intron MGP_CASTEiJ_T0061754.1 MGP_CASTEiJ_G0026584.1 mouse_genomes_project 3 89100657 89113539 + MGP_CASTEiJ_P0061754 Thbs3 protein_coding protein_coding MGP_CASTEiJ_T0061755.1 MGP_CASTEiJ_G0026584.1 mouse_genomes_project 3 89104264 89105934 + Thbs3 protein_coding retained_intron MGP_CASTEiJ_T0061756.1 MGP_CASTEiJ_G0026584.1 mouse_genomes_project 3 89105980 89113576 + MGP_CASTEiJ_P0061756 Thbs3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0061757.1 MGP_CASTEiJ_G0026584.1 mouse_genomes_project 3 89107795 89109902 + Thbs3 protein_coding processed_transcript MGP_CASTEiJ_T0061759.1 MGP_CASTEiJ_G0026584.1 mouse_genomes_project 3 89110865 89112287 + Thbs3 protein_coding retained_intron MGP_CASTEiJ_T0061760.1 MGP_CASTEiJ_G0026584.1 mouse_genomes_project 3 89111014 89113438 + MGP_CASTEiJ_P0061760 Thbs3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061761.1 MGP_CASTEiJ_G0026584.1 mouse_genomes_project 3 89111055 89112155 + Thbs3 protein_coding retained_intron MGP_CASTEiJ_T0061762.1 MGP_CASTEiJ_G0026584.1 mouse_genomes_project 3 89111906 89113298 + Thbs3 protein_coding retained_intron MGP_CASTEiJ_T0061763.1 MGP_CASTEiJ_G0026584.1 mouse_genomes_project 3 89112984 89113521 + Thbs3 protein_coding retained_intron MGP_CASTEiJ_T0061584.1 MGP_CASTEiJ_G0026560.1 mouse_genomes_project 3 88320791 88331357 + MGP_CASTEiJ_P0061584 Mex3a protein_coding protein_coding MGP_CASTEiJ_T0013623.1 MGP_CASTEiJ_G0011786.1 mouse_genomes_project 3 56360577 56361073 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061195.1 MGP_CASTEiJ_G0026477.1 mouse_genomes_project 3 78867295 78879270 + Ppid protein_coding retained_intron MGP_CASTEiJ_T0061196.1 MGP_CASTEiJ_G0026477.1 mouse_genomes_project 3 78867318 78879643 + MGP_CASTEiJ_P0061196 Ppid protein_coding protein_coding MGP_CASTEiJ_T0061197.1 MGP_CASTEiJ_G0026477.1 mouse_genomes_project 3 78867394 78879147 + MGP_CASTEiJ_P0061197 Ppid protein_coding unknown_likely_coding MGP_CASTEiJ_T0061198.1 MGP_CASTEiJ_G0026477.1 mouse_genomes_project 3 78867441 78871268 + Ppid protein_coding processed_transcript MGP_CASTEiJ_T0061199.1 MGP_CASTEiJ_G0026477.1 mouse_genomes_project 3 78869632 78873725 + MGP_CASTEiJ_P0061199 Ppid protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061200.1 MGP_CASTEiJ_G0026477.1 mouse_genomes_project 3 78872116 78874148 + Ppid protein_coding retained_intron MGP_CASTEiJ_T0061201.1 MGP_CASTEiJ_G0026477.1 mouse_genomes_project 3 78874664 78878309 + Ppid protein_coding retained_intron MGP_CASTEiJ_T0064064.1 MGP_CASTEiJ_G0027103.1 mouse_genomes_project 3 144886763 144975460 - MGP_CASTEiJ_P0064064 Pkn2 protein_coding protein_coding MGP_CASTEiJ_T0064065.1 MGP_CASTEiJ_G0027103.1 mouse_genomes_project 3 144889569 144975371 - MGP_CASTEiJ_P0064065 Pkn2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064066.1 MGP_CASTEiJ_G0027103.1 mouse_genomes_project 3 144889671 144975114 - MGP_CASTEiJ_P0064066 Pkn2 protein_coding protein_coding MGP_CASTEiJ_T0064067.1 MGP_CASTEiJ_G0027103.1 mouse_genomes_project 3 144889671 144975114 - MGP_CASTEiJ_P0064067 Pkn2 protein_coding protein_coding MGP_CASTEiJ_T0064068.1 MGP_CASTEiJ_G0027103.1 mouse_genomes_project 3 144895826 144975376 - Pkn2 protein_coding processed_transcript MGP_CASTEiJ_T0064069.1 MGP_CASTEiJ_G0027103.1 mouse_genomes_project 3 144895908 144898983 - Pkn2 protein_coding retained_intron MGP_CASTEiJ_T0064070.1 MGP_CASTEiJ_G0027103.1 mouse_genomes_project 3 144900802 144975446 - Pkn2 protein_coding processed_transcript MGP_CASTEiJ_T0064071.1 MGP_CASTEiJ_G0027103.1 mouse_genomes_project 3 144905396 144975163 - MGP_CASTEiJ_P0064071 Pkn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064072.1 MGP_CASTEiJ_G0027103.1 mouse_genomes_project 3 144905848 144917785 - MGP_CASTEiJ_P0064072 Pkn2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064073.1 MGP_CASTEiJ_G0027103.1 mouse_genomes_project 3 144906965 144908788 - Pkn2 protein_coding retained_intron MGP_CASTEiJ_T0064074.1 MGP_CASTEiJ_G0027103.1 mouse_genomes_project 3 144907759 144927749 - MGP_CASTEiJ_P0064074 Pkn2 protein_coding protein_coding MGP_CASTEiJ_T0064075.1 MGP_CASTEiJ_G0027103.1 mouse_genomes_project 3 144917495 144927712 - Pkn2 protein_coding retained_intron MGP_CASTEiJ_T0064076.1 MGP_CASTEiJ_G0027103.1 mouse_genomes_project 3 144928687 144975439 - Pkn2 protein_coding retained_intron MGP_CASTEiJ_T0064077.1 MGP_CASTEiJ_G0027103.1 mouse_genomes_project 3 144946097 144948883 - Pkn2 protein_coding retained_intron MGP_CASTEiJ_T0059978.1 MGP_CASTEiJ_G0026227.1 mouse_genomes_project 3 6563909 6601195 + MGP_CASTEiJ_P0059978 Zbtb10 protein_coding protein_coding MGP_CASTEiJ_T0059979.1 MGP_CASTEiJ_G0026227.1 mouse_genomes_project 3 6563985 6596968 + MGP_CASTEiJ_P0059979 Zbtb10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063090.1 MGP_CASTEiJ_G0026918.1 mouse_genomes_project 3 108298663 108348993 - Gstm2 protein_coding retained_intron MGP_CASTEiJ_T0063092.1 MGP_CASTEiJ_G0026918.1 mouse_genomes_project 3 108343496 108348965 - MGP_CASTEiJ_P0063092 Gstm2 protein_coding protein_coding MGP_CASTEiJ_T0063093.1 MGP_CASTEiJ_G0026918.1 mouse_genomes_project 3 108348048 108348993 - Gstm2 protein_coding retained_intron MGP_CASTEiJ_T0100974.1 MGP_CASTEiJ_G0037887.1 mouse_genomes_project 3 87281996 87282116 - Gm25167 snoRNA snoRNA MGP_CASTEiJ_T0061284.1 MGP_CASTEiJ_G0026499.1 mouse_genomes_project 3 82599179 82830193 + MGP_CASTEiJ_P0061284 Dchs2 protein_coding protein_coding MGP_CASTEiJ_T0061285.1 MGP_CASTEiJ_G0026499.1 mouse_genomes_project 3 82693011 82831429 + MGP_CASTEiJ_P0061285 Dchs2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0062519.1 MGP_CASTEiJ_G0026781.1 mouse_genomes_project 3 96141315 96144409 + MGP_CASTEiJ_P0062519 Ankrd34a protein_coding protein_coding MGP_CASTEiJ_T0061690.1 MGP_CASTEiJ_G0026577.1 mouse_genomes_project 3 89016861 89027271 + MGP_CASTEiJ_P0061690 Pklr protein_coding protein_coding MGP_CASTEiJ_T0061691.1 MGP_CASTEiJ_G0026577.1 mouse_genomes_project 3 89016893 89018175 + Pklr protein_coding processed_transcript MGP_CASTEiJ_T0061692.1 MGP_CASTEiJ_G0026577.1 mouse_genomes_project 3 89017291 89027497 + MGP_CASTEiJ_P0061692 Pklr protein_coding protein_coding MGP_CASTEiJ_T0061693.1 MGP_CASTEiJ_G0026577.1 mouse_genomes_project 3 89017298 89022217 + MGP_CASTEiJ_P0061693 Pklr protein_coding protein_coding MGP_CASTEiJ_T0061694.1 MGP_CASTEiJ_G0026577.1 mouse_genomes_project 3 89017342 89021585 + Pklr protein_coding processed_transcript MGP_CASTEiJ_T0001085.1 MGP_CASTEiJ_G0001018.1 mouse_genomes_project 3 28065118 28066008 - TEC TEC MGP_CASTEiJ_T0013877.1 MGP_CASTEiJ_G0012040.1 mouse_genomes_project 3 137644114 137644479 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062561.1 MGP_CASTEiJ_G0026791.1 mouse_genomes_project 3 96289885 96363677 + MGP_CASTEiJ_P0062561 Rnf115 protein_coding protein_coding MGP_CASTEiJ_T0062562.1 MGP_CASTEiJ_G0026791.1 mouse_genomes_project 3 96289893 96364163 + MGP_CASTEiJ_P0062562 Rnf115 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062563.1 MGP_CASTEiJ_G0026791.1 mouse_genomes_project 3 96290060 96354905 + Rnf115 protein_coding processed_transcript MGP_CASTEiJ_T0063667.1 MGP_CASTEiJ_G0027027.1 mouse_genomes_project 3 130969501 131089384 + MGP_CASTEiJ_P0063667 Elovl6 protein_coding protein_coding MGP_CASTEiJ_T0063668.1 MGP_CASTEiJ_G0027027.1 mouse_genomes_project 3 130997800 131078290 + MGP_CASTEiJ_P0063668 Elovl6 protein_coding protein_coding MGP_CASTEiJ_T0013554.1 MGP_CASTEiJ_G0011717.1 mouse_genomes_project 3 31751146 31752031 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017206.1 MGP_CASTEiJ_G0014818.1 mouse_genomes_project 3 48789187 48875285 - Gm6209 processed_transcript lincRNA MGP_CASTEiJ_T0017207.1 MGP_CASTEiJ_G0014818.1 mouse_genomes_project 3 48844294 48848881 - Gm6209 processed_transcript retained_intron MGP_CASTEiJ_T0004198.1 MGP_CASTEiJ_G0003688.1 mouse_genomes_project 3 105438422 105450628 - Kcnd3os antisense antisense MGP_CASTEiJ_T0004199.1 MGP_CASTEiJ_G0003688.1 mouse_genomes_project 3 105447070 105453159 - Kcnd3os antisense antisense MGP_CASTEiJ_T0063475.1 MGP_CASTEiJ_G0026996.1 mouse_genomes_project 3 123232536 123380676 + Bcar3 protein_coding retained_intron MGP_CASTEiJ_T0063476.1 MGP_CASTEiJ_G0026996.1 mouse_genomes_project 3 123373256 123380394 + Bcar3 protein_coding retained_intron MGP_CASTEiJ_T0063477.1 MGP_CASTEiJ_G0026996.1 mouse_genomes_project 3 123373277 123489459 + MGP_CASTEiJ_P0063477 Bcar3 protein_coding protein_coding MGP_CASTEiJ_T0063478.1 MGP_CASTEiJ_G0026996.1 mouse_genomes_project 3 123373322 123427114 + Bcar3 protein_coding processed_transcript MGP_CASTEiJ_T0063479.1 MGP_CASTEiJ_G0026996.1 mouse_genomes_project 3 123438950 123467015 + MGP_CASTEiJ_P0063479 Bcar3 protein_coding protein_coding MGP_CASTEiJ_T0063480.1 MGP_CASTEiJ_G0026996.1 mouse_genomes_project 3 123463256 123467016 + MGP_CASTEiJ_P0063480 Bcar3 protein_coding protein_coding MGP_CASTEiJ_T0063481.1 MGP_CASTEiJ_G0026996.1 mouse_genomes_project 3 123466630 123471328 + Bcar3 protein_coding retained_intron MGP_CASTEiJ_T0063482.1 MGP_CASTEiJ_G0026996.1 mouse_genomes_project 3 123469707 123471516 + MGP_CASTEiJ_P0063482 Bcar3 protein_coding protein_coding MGP_CASTEiJ_T0063483.1 MGP_CASTEiJ_G0026996.1 mouse_genomes_project 3 123470800 123482496 + MGP_CASTEiJ_P0063483 Bcar3 protein_coding protein_coding MGP_CASTEiJ_T0063484.1 MGP_CASTEiJ_G0026996.1 mouse_genomes_project 3 123483929 123484688 + Bcar3 protein_coding retained_intron MGP_CASTEiJ_T0013795.1 MGP_CASTEiJ_G0011958.1 mouse_genomes_project 3 110393588 110394072 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013709.1 MGP_CASTEiJ_G0011872.1 mouse_genomes_project 3 85525898 85526373 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004116.1 MGP_CASTEiJ_G0003630.1 mouse_genomes_project 3 53877728 53903335 - Gm42609 antisense antisense MGP_CASTEiJ_T0004117.1 MGP_CASTEiJ_G0003630.1 mouse_genomes_project 3 53880519 53901237 - Gm42609 antisense antisense MGP_CASTEiJ_T0061279.1 MGP_CASTEiJ_G0026498.1 mouse_genomes_project 3 82526511 82544498 + MGP_CASTEiJ_P0061279 Plrg1 protein_coding protein_coding MGP_CASTEiJ_T0061280.1 MGP_CASTEiJ_G0026498.1 mouse_genomes_project 3 82526521 82544432 + MGP_CASTEiJ_P0061280 Plrg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061281.1 MGP_CASTEiJ_G0026498.1 mouse_genomes_project 3 82526544 82544315 + MGP_CASTEiJ_P0061281 Plrg1 protein_coding protein_coding MGP_CASTEiJ_T0061282.1 MGP_CASTEiJ_G0026498.1 mouse_genomes_project 3 82540189 82541211 + Plrg1 protein_coding retained_intron MGP_CASTEiJ_T0061283.1 MGP_CASTEiJ_G0026498.1 mouse_genomes_project 3 82541118 82542310 + Plrg1 protein_coding retained_intron MGP_CASTEiJ_T0061381.1 MGP_CASTEiJ_G0026521.1 mouse_genomes_project 3 86656428 86658453 - MGP_CASTEiJ_P0061381 protein_coding protein_coding MGP_CASTEiJ_T0011210.1 MGP_CASTEiJ_G0009398.1 mouse_genomes_project 3 72194834 72195132 - Gm22538 misc_RNA misc_RNA MGP_CASTEiJ_T0001142.1 MGP_CASTEiJ_G0001075.1 mouse_genomes_project 3 49950733 49951834 + TEC TEC MGP_CASTEiJ_T0061152.1 MGP_CASTEiJ_G0026469.1 mouse_genomes_project 3 74346973 74533007 - MGP_CASTEiJ_P0061152 Wdr49 protein_coding unknown_likely_coding MGP_CASTEiJ_T0061153.1 MGP_CASTEiJ_G0026469.1 mouse_genomes_project 3 74346973 74532678 - MGP_CASTEiJ_P0061153 Wdr49 protein_coding protein_coding MGP_CASTEiJ_T0061154.1 MGP_CASTEiJ_G0026469.1 mouse_genomes_project 3 74457933 74504846 - MGP_CASTEiJ_P0061154 Wdr49 protein_coding protein_coding MGP_CASTEiJ_T0061155.1 MGP_CASTEiJ_G0026469.1 mouse_genomes_project 3 74457933 74532679 - MGP_CASTEiJ_P0061155 Wdr49 protein_coding protein_coding MGP_CASTEiJ_T0061156.1 MGP_CASTEiJ_G0026469.1 mouse_genomes_project 3 74530342 74533094 - Wdr49 protein_coding retained_intron MGP_CASTEiJ_T0007325.1 MGP_CASTEiJ_G0006018.1 mouse_genomes_project 3 35863348 35888809 - Gm43821 lincRNA lincRNA MGP_CASTEiJ_T0010254.1 MGP_CASTEiJ_G0008442.1 mouse_genomes_project 3 108979495 108979569 - Gm22860 miRNA miRNA MGP_CASTEiJ_T0101003.1 MGP_CASTEiJ_G0037916.1 mouse_genomes_project 3 145796185 145796310 + Gm24728 snoRNA snoRNA MGP_CASTEiJ_T0017227.1 MGP_CASTEiJ_G0014827.1 mouse_genomes_project 3 95812406 95815563 + Gm20634 processed_transcript processed_transcript MGP_CASTEiJ_T0063029.1 MGP_CASTEiJ_G0026901.1 mouse_genomes_project 3 107548669 107553644 + MGP_CASTEiJ_P0063029 A630076J17Rik protein_coding protein_coding MGP_CASTEiJ_T0013546.1 MGP_CASTEiJ_G0011709.1 mouse_genomes_project 3 28030854 28031327 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099686.1 MGP_CASTEiJ_G0036599.1 mouse_genomes_project 3 33359623 33359729 + Gm25696 snRNA snRNA MGP_CASTEiJ_T0004165.1 MGP_CASTEiJ_G0003666.1 mouse_genomes_project 3 94437698 94444639 - Gm15265 antisense antisense MGP_CASTEiJ_T0004088.1 MGP_CASTEiJ_G0003609.1 mouse_genomes_project 3 30144995 30147651 + Gm37640 antisense antisense MGP_CASTEiJ_T0001259.1 MGP_CASTEiJ_G0001190.1 mouse_genomes_project 3 124164706 124165306 - TEC TEC MGP_CASTEiJ_T0013646.1 MGP_CASTEiJ_G0011809.1 mouse_genomes_project 3 61903731 61904350 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007479.1 MGP_CASTEiJ_G0006133.1 mouse_genomes_project 3 116690690 116710811 + Gm26544 lincRNA lincRNA MGP_CASTEiJ_T0001126.1 MGP_CASTEiJ_G0001059.1 mouse_genomes_project 3 46220847 46220956 + TEC TEC MGP_CASTEiJ_T0013697.1 MGP_CASTEiJ_G0011860.1 mouse_genomes_project 3 78088003 78088669 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063920.1 MGP_CASTEiJ_G0027072.1 mouse_genomes_project 3 139616130 139618174 + MGP_CASTEiJ_P0063920 H2afz protein_coding protein_coding MGP_CASTEiJ_T0063921.1 MGP_CASTEiJ_G0027072.1 mouse_genomes_project 3 139616148 139617557 + H2afz protein_coding processed_transcript MGP_CASTEiJ_T0063922.1 MGP_CASTEiJ_G0027072.1 mouse_genomes_project 3 139616251 139617921 + MGP_CASTEiJ_P0063922 H2afz protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063923.1 MGP_CASTEiJ_G0027072.1 mouse_genomes_project 3 139616251 139618280 + MGP_CASTEiJ_P0063923 H2afz protein_coding protein_coding MGP_CASTEiJ_T0063924.1 MGP_CASTEiJ_G0027072.1 mouse_genomes_project 3 139616495 139617994 + H2afz protein_coding retained_intron MGP_CASTEiJ_T0063925.1 MGP_CASTEiJ_G0027072.1 mouse_genomes_project 3 139616591 139617860 + H2afz protein_coding retained_intron MGP_CASTEiJ_T0013821.1 MGP_CASTEiJ_G0011984.1 mouse_genomes_project 3 117808200 117808868 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007302.1 MGP_CASTEiJ_G0005998.1 mouse_genomes_project 3 31260912 31316517 - lincRNA lincRNA MGP_CASTEiJ_T0001153.1 MGP_CASTEiJ_G0001084.1 mouse_genomes_project 3 50282281 50282900 - TEC TEC MGP_CASTEiJ_T0001252.1 MGP_CASTEiJ_G0001183.1 mouse_genomes_project 3 122618722 122620501 - TEC TEC MGP_CASTEiJ_T0001066.1 MGP_CASTEiJ_G0000999.1 mouse_genomes_project 3 8044639 8046419 + TEC TEC MGP_CASTEiJ_T0007400.1 MGP_CASTEiJ_G0006074.1 mouse_genomes_project 3 82259212 82279257 - Gm43348 lincRNA lincRNA MGP_CASTEiJ_T0013616.1 MGP_CASTEiJ_G0011779.1 mouse_genomes_project 3 52439967 52440375 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061577.1 MGP_CASTEiJ_G0026559.1 mouse_genomes_project 3 88259844 88264337 - Lmna protein_coding retained_intron MGP_CASTEiJ_T0061578.1 MGP_CASTEiJ_G0026559.1 mouse_genomes_project 3 88260841 88285609 - MGP_CASTEiJ_P0061578 Lmna protein_coding protein_coding MGP_CASTEiJ_T0061579.1 MGP_CASTEiJ_G0026559.1 mouse_genomes_project 3 88261538 88285611 - Lmna protein_coding processed_transcript MGP_CASTEiJ_T0061580.1 MGP_CASTEiJ_G0026559.1 mouse_genomes_project 3 88261766 88262554 - Lmna protein_coding retained_intron MGP_CASTEiJ_T0061581.1 MGP_CASTEiJ_G0026559.1 mouse_genomes_project 3 88262894 88285581 - MGP_CASTEiJ_P0061581 Lmna protein_coding protein_coding MGP_CASTEiJ_T0061582.1 MGP_CASTEiJ_G0026559.1 mouse_genomes_project 3 88262895 88272812 - MGP_CASTEiJ_P0061582 Lmna protein_coding protein_coding MGP_CASTEiJ_T0061583.1 MGP_CASTEiJ_G0026559.1 mouse_genomes_project 3 88285026 88293251 - MGP_CASTEiJ_P0061583 Lmna protein_coding protein_coding MGP_CASTEiJ_T0063176.1 MGP_CASTEiJ_G0026940.1 mouse_genomes_project 3 109004811 109056495 + MGP_CASTEiJ_P0063176 Wdr47 protein_coding protein_coding MGP_CASTEiJ_T0063177.1 MGP_CASTEiJ_G0026940.1 mouse_genomes_project 3 109004884 109029005 + MGP_CASTEiJ_P0063177 Wdr47 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063178.1 MGP_CASTEiJ_G0026940.1 mouse_genomes_project 3 109004921 109025792 + Wdr47 protein_coding retained_intron MGP_CASTEiJ_T0063179.1 MGP_CASTEiJ_G0026940.1 mouse_genomes_project 3 109029201 109035221 + Wdr47 protein_coding processed_transcript MGP_CASTEiJ_T0063180.1 MGP_CASTEiJ_G0026940.1 mouse_genomes_project 3 109029582 109038105 + Wdr47 protein_coding retained_intron MGP_CASTEiJ_T0063181.1 MGP_CASTEiJ_G0026940.1 mouse_genomes_project 3 109033910 109043933 + Wdr47 protein_coding processed_transcript MGP_CASTEiJ_T0063182.1 MGP_CASTEiJ_G0026940.1 mouse_genomes_project 3 109037753 109048651 + Wdr47 protein_coding retained_intron MGP_CASTEiJ_T0013860.1 MGP_CASTEiJ_G0012023.1 mouse_genomes_project 3 132928452 132928647 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062277.1 MGP_CASTEiJ_G0026724.1 mouse_genomes_project 3 94581999 94587419 + MGP_CASTEiJ_P0062277 protein_coding protein_coding MGP_CASTEiJ_T0013651.1 MGP_CASTEiJ_G0011814.1 mouse_genomes_project 3 64379614 64380421 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007303.1 MGP_CASTEiJ_G0005999.1 mouse_genomes_project 3 31423600 31458671 - 4930431L21Rik lincRNA lincRNA MGP_CASTEiJ_T0007304.1 MGP_CASTEiJ_G0005999.1 mouse_genomes_project 3 31427722 31428695 - 4930431L21Rik lincRNA lincRNA MGP_CASTEiJ_T0062084.1 MGP_CASTEiJ_G0026668.1 mouse_genomes_project 3 91918862 91925086 - MGP_CASTEiJ_P0062084 Lce1a2 protein_coding protein_coding MGP_CASTEiJ_T0062662.1 MGP_CASTEiJ_G0026817.1 mouse_genomes_project 3 98542382 98549994 - MGP_CASTEiJ_P0062662 Hsd3b1 protein_coding protein_coding MGP_CASTEiJ_T0062663.1 MGP_CASTEiJ_G0026817.1 mouse_genomes_project 3 98542384 98549994 - MGP_CASTEiJ_P0062663 Hsd3b1 protein_coding protein_coding MGP_CASTEiJ_T0010265.1 MGP_CASTEiJ_G0008453.1 mouse_genomes_project 3 128759655 128759721 + Mir302d miRNA miRNA MGP_CASTEiJ_T0013726.1 MGP_CASTEiJ_G0011889.1 mouse_genomes_project 3 90988418 90988721 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102267.1 MGP_CASTEiJ_G0038992.1 mouse_genomes_project 3 62991990 63017572 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010270.1 MGP_CASTEiJ_G0008458.1 mouse_genomes_project 3 138517262 138517379 - Gm44327 miRNA miRNA MGP_CASTEiJ_T0100941.1 MGP_CASTEiJ_G0037854.1 mouse_genomes_project 3 11743204 11743329 - Gm23112 snoRNA snoRNA MGP_CASTEiJ_T0001330.1 MGP_CASTEiJ_G0001260.1 mouse_genomes_project 3 155052098 155053882 + TEC TEC MGP_CASTEiJ_T0007310.1 MGP_CASTEiJ_G0006005.1 mouse_genomes_project 3 32144810 32154857 - Gm42695 lincRNA lincRNA MGP_CASTEiJ_T0013757.1 MGP_CASTEiJ_G0011920.1 mouse_genomes_project 3 98535612 98535867 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013538.1 MGP_CASTEiJ_G0011701.1 mouse_genomes_project 3 23677031 23678998 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102286.1 MGP_CASTEiJ_G0039011.1 mouse_genomes_project 3 90855209 90857092 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013613.1 MGP_CASTEiJ_G0011776.1 mouse_genomes_project 3 51718326 51719064 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001181.1 MGP_CASTEiJ_G0001112.1 mouse_genomes_project 3 64246193 64247142 - TEC TEC MGP_CASTEiJ_T0063172.1 MGP_CASTEiJ_G0026938.1 mouse_genomes_project 3 108968603 108974351 - MGP_CASTEiJ_P0063172 protein_coding protein_coding MGP_CASTEiJ_T0063173.1 MGP_CASTEiJ_G0026938.1 mouse_genomes_project 3 108968603 108974647 - MGP_CASTEiJ_P0063173 protein_coding protein_coding MGP_CASTEiJ_T0059967.1 MGP_CASTEiJ_G0026226.1 mouse_genomes_project 3 6199723 6287959 - MGP_CASTEiJ_P0059967 Tpd52 protein_coding protein_coding MGP_CASTEiJ_T0059968.1 MGP_CASTEiJ_G0026226.1 mouse_genomes_project 3 6202796 6287714 - MGP_CASTEiJ_P0059968 Tpd52 protein_coding protein_coding MGP_CASTEiJ_T0059969.1 MGP_CASTEiJ_G0026226.1 mouse_genomes_project 3 6203771 6239976 - MGP_CASTEiJ_P0059969 Tpd52 protein_coding protein_coding MGP_CASTEiJ_T0059970.1 MGP_CASTEiJ_G0026226.1 mouse_genomes_project 3 6204952 6239978 - MGP_CASTEiJ_P0059970 Tpd52 protein_coding protein_coding MGP_CASTEiJ_T0059971.1 MGP_CASTEiJ_G0026226.1 mouse_genomes_project 3 6205056 6278434 - MGP_CASTEiJ_P0059971 Tpd52 protein_coding protein_coding MGP_CASTEiJ_T0059972.1 MGP_CASTEiJ_G0026226.1 mouse_genomes_project 3 6205120 6287675 - MGP_CASTEiJ_P0059972 Tpd52 protein_coding protein_coding MGP_CASTEiJ_T0059973.1 MGP_CASTEiJ_G0026226.1 mouse_genomes_project 3 6205228 6238266 - MGP_CASTEiJ_P0059973 Tpd52 protein_coding protein_coding MGP_CASTEiJ_T0059974.1 MGP_CASTEiJ_G0026226.1 mouse_genomes_project 3 6205303 6287714 - MGP_CASTEiJ_P0059974 Tpd52 protein_coding protein_coding MGP_CASTEiJ_T0059975.1 MGP_CASTEiJ_G0026226.1 mouse_genomes_project 3 6219647 6267383 - MGP_CASTEiJ_P0059975 Tpd52 protein_coding protein_coding MGP_CASTEiJ_T0059976.1 MGP_CASTEiJ_G0026226.1 mouse_genomes_project 3 6222438 6287673 - Tpd52 protein_coding processed_transcript MGP_CASTEiJ_T0059977.1 MGP_CASTEiJ_G0026226.1 mouse_genomes_project 3 6222500 6287714 - MGP_CASTEiJ_P0059977 Tpd52 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013536.1 MGP_CASTEiJ_G0011699.1 mouse_genomes_project 3 22236371 22236654 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007367.1 MGP_CASTEiJ_G0006047.1 mouse_genomes_project 3 56681423 56735225 + 4921539H07Rik lincRNA lincRNA MGP_CASTEiJ_T0007369.1 MGP_CASTEiJ_G0006047.1 mouse_genomes_project 3 56734099 56737773 + 4921539H07Rik lincRNA lincRNA MGP_CASTEiJ_T0062095.1 MGP_CASTEiJ_G0026678.1 mouse_genomes_project 3 92090307 92091933 - MGP_CASTEiJ_P0062095 Lce1k protein_coding protein_coding MGP_CASTEiJ_T0059998.1 MGP_CASTEiJ_G0026234.1 mouse_genomes_project 3 7558817 7563310 - MGP_CASTEiJ_P0059998 Fabp4 protein_coding protein_coding MGP_CASTEiJ_T0059999.1 MGP_CASTEiJ_G0026234.1 mouse_genomes_project 3 7559057 7563292 - Fabp4 protein_coding retained_intron MGP_CASTEiJ_T0013655.1 MGP_CASTEiJ_G0011818.1 mouse_genomes_project 3 64840104 64840872 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098873.1 MGP_CASTEiJ_G0035798.1 mouse_genomes_project 3 16910455 16910989 + BC002189 sense_intronic sense_intronic MGP_CASTEiJ_T0013477.1 MGP_CASTEiJ_G0011640.1 mouse_genomes_project 3 5422708 5424560 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013641.1 MGP_CASTEiJ_G0011804.1 mouse_genomes_project 3 60027508 60027800 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102271.1 MGP_CASTEiJ_G0038996.1 mouse_genomes_project 3 69486962 69487997 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0060591.1 MGP_CASTEiJ_G0026352.1 mouse_genomes_project 3 38705063 38734851 + MGP_CASTEiJ_P0060591 Larp1b protein_coding protein_coding MGP_CASTEiJ_T0060592.1 MGP_CASTEiJ_G0026352.1 mouse_genomes_project 3 38705501 38734315 + MGP_CASTEiJ_P0060592 Larp1b protein_coding protein_coding MGP_CASTEiJ_T0060593.1 MGP_CASTEiJ_G0026352.1 mouse_genomes_project 3 38705527 38717646 + MGP_CASTEiJ_P0060593 Larp1b protein_coding protein_coding MGP_CASTEiJ_T0060594.1 MGP_CASTEiJ_G0026352.1 mouse_genomes_project 3 38717049 38719487 + Larp1b protein_coding processed_transcript MGP_CASTEiJ_T0060595.1 MGP_CASTEiJ_G0026352.1 mouse_genomes_project 3 38717586 38734468 + MGP_CASTEiJ_P0060595 Larp1b protein_coding protein_coding MGP_CASTEiJ_T0060596.1 MGP_CASTEiJ_G0026352.1 mouse_genomes_project 3 38719432 38771460 + MGP_CASTEiJ_P0060596 Larp1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060597.1 MGP_CASTEiJ_G0026352.1 mouse_genomes_project 3 38728031 38734062 + Larp1b protein_coding processed_transcript MGP_CASTEiJ_T0060598.1 MGP_CASTEiJ_G0026352.1 mouse_genomes_project 3 38770170 38801251 + Larp1b protein_coding processed_transcript MGP_CASTEiJ_T0060599.1 MGP_CASTEiJ_G0026352.1 mouse_genomes_project 3 38782092 38801307 + Larp1b protein_coding retained_intron MGP_CASTEiJ_T0060600.1 MGP_CASTEiJ_G0026352.1 mouse_genomes_project 3 38785034 38800803 + Larp1b protein_coding processed_transcript MGP_CASTEiJ_T0060601.1 MGP_CASTEiJ_G0026352.1 mouse_genomes_project 3 38785574 38800384 + MGP_CASTEiJ_P0060601 Larp1b protein_coding protein_coding MGP_CASTEiJ_T0060602.1 MGP_CASTEiJ_G0026352.1 mouse_genomes_project 3 38794614 38795337 + Larp1b protein_coding processed_transcript MGP_CASTEiJ_T0060603.1 MGP_CASTEiJ_G0026352.1 mouse_genomes_project 3 38794633 38801271 + Larp1b protein_coding processed_transcript MGP_CASTEiJ_T0060604.1 MGP_CASTEiJ_G0026352.1 mouse_genomes_project 3 38795042 38801269 + MGP_CASTEiJ_P0060604 Larp1b protein_coding protein_coding MGP_CASTEiJ_T0060605.1 MGP_CASTEiJ_G0026352.1 mouse_genomes_project 3 38797903 38799761 + Larp1b protein_coding processed_transcript MGP_CASTEiJ_T0098920.1 MGP_CASTEiJ_G0035844.1 mouse_genomes_project 3 104592744 104595606 + Gm43581 sense_intronic sense_intronic MGP_CASTEiJ_T0013533.1 MGP_CASTEiJ_G0011696.1 mouse_genomes_project 3 19733847 19739695 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098377.1 MGP_CASTEiJ_G0035308.1 mouse_genomes_project 3 156544561 156544643 + pseudogene pseudogene MGP_CASTEiJ_T0062269.1 MGP_CASTEiJ_G0026723.1 mouse_genomes_project 3 94577844 94578785 - Scnm1 protein_coding retained_intron MGP_CASTEiJ_T0062270.1 MGP_CASTEiJ_G0026723.1 mouse_genomes_project 3 94577845 94581685 - Scnm1 protein_coding retained_intron MGP_CASTEiJ_T0062271.1 MGP_CASTEiJ_G0026723.1 mouse_genomes_project 3 94577847 94578414 - Scnm1 protein_coding retained_intron MGP_CASTEiJ_T0062272.1 MGP_CASTEiJ_G0026723.1 mouse_genomes_project 3 94577849 94578587 - Scnm1 protein_coding retained_intron MGP_CASTEiJ_T0062273.1 MGP_CASTEiJ_G0026723.1 mouse_genomes_project 3 94577851 94579183 - Scnm1 protein_coding processed_transcript MGP_CASTEiJ_T0062274.1 MGP_CASTEiJ_G0026723.1 mouse_genomes_project 3 94577854 94581923 - MGP_CASTEiJ_P0062274 Scnm1 protein_coding protein_coding MGP_CASTEiJ_T0062275.1 MGP_CASTEiJ_G0026723.1 mouse_genomes_project 3 94577909 94581807 - MGP_CASTEiJ_P0062275 Scnm1 protein_coding protein_coding MGP_CASTEiJ_T0062276.1 MGP_CASTEiJ_G0026723.1 mouse_genomes_project 3 94578418 94581851 - Scnm1 protein_coding retained_intron MGP_CASTEiJ_T0004074.1 MGP_CASTEiJ_G0003599.1 mouse_genomes_project 3 4804185 4893384 + Gm16685 antisense antisense MGP_CASTEiJ_T0102258.1 MGP_CASTEiJ_G0038983.1 mouse_genomes_project 3 676328 676756 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0001311.1 MGP_CASTEiJ_G0001241.1 mouse_genomes_project 3 137520501 137522750 + TEC TEC MGP_CASTEiJ_T0001297.1 MGP_CASTEiJ_G0001227.1 mouse_genomes_project 3 132214240 132216618 - TEC TEC MGP_CASTEiJ_T0001175.1 MGP_CASTEiJ_G0001106.1 mouse_genomes_project 3 57299715 57300823 + TEC TEC MGP_CASTEiJ_T0007502.1 MGP_CASTEiJ_G0006149.1 mouse_genomes_project 3 127332805 127334828 + Gm42827 lincRNA lincRNA MGP_CASTEiJ_T0001258.1 MGP_CASTEiJ_G0001189.1 mouse_genomes_project 3 123986707 123990243 + TEC TEC MGP_CASTEiJ_T0099740.1 MGP_CASTEiJ_G0036653.1 mouse_genomes_project 3 104550982 104551064 - Gm26091 snRNA snRNA MGP_CASTEiJ_T0001294.1 MGP_CASTEiJ_G0001224.1 mouse_genomes_project 3 132053348 132059471 + TEC TEC MGP_CASTEiJ_T0063532.1 MGP_CASTEiJ_G0027007.1 mouse_genomes_project 3 124542106 124695847 - MGP_CASTEiJ_P0063532 Ndst3 protein_coding protein_coding MGP_CASTEiJ_T0063533.1 MGP_CASTEiJ_G0027007.1 mouse_genomes_project 3 124542112 124717312 - MGP_CASTEiJ_P0063533 Ndst3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063534.1 MGP_CASTEiJ_G0027007.1 mouse_genomes_project 3 124542114 124717312 - MGP_CASTEiJ_P0063534 Ndst3 protein_coding protein_coding MGP_CASTEiJ_T0063535.1 MGP_CASTEiJ_G0027007.1 mouse_genomes_project 3 124542115 124695931 - MGP_CASTEiJ_P0063535 Ndst3 protein_coding protein_coding MGP_CASTEiJ_T0063536.1 MGP_CASTEiJ_G0027007.1 mouse_genomes_project 3 124544504 124639791 - MGP_CASTEiJ_P0063536 Ndst3 protein_coding protein_coding MGP_CASTEiJ_T0063537.1 MGP_CASTEiJ_G0027007.1 mouse_genomes_project 3 124544633 124716739 - MGP_CASTEiJ_P0063537 Ndst3 protein_coding protein_coding MGP_CASTEiJ_T0063538.1 MGP_CASTEiJ_G0027007.1 mouse_genomes_project 3 124566650 124696116 - Ndst3 protein_coding retained_intron MGP_CASTEiJ_T0063539.1 MGP_CASTEiJ_G0027007.1 mouse_genomes_project 3 124570510 124573970 - Ndst3 protein_coding retained_intron MGP_CASTEiJ_T0063540.1 MGP_CASTEiJ_G0027007.1 mouse_genomes_project 3 124570681 124589989 - Ndst3 protein_coding processed_transcript MGP_CASTEiJ_T0013752.1 MGP_CASTEiJ_G0011915.1 mouse_genomes_project 3 96224170 96225962 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007409.1 MGP_CASTEiJ_G0006082.1 mouse_genomes_project 3 85770328 85773141 + Gm37933 lincRNA lincRNA MGP_CASTEiJ_T0061434.1 MGP_CASTEiJ_G0026531.1 mouse_genomes_project 3 87487481 87504442 - MGP_CASTEiJ_P0061434 Ntrk1 protein_coding protein_coding MGP_CASTEiJ_T0064089.1 MGP_CASTEiJ_G0027106.1 mouse_genomes_project 3 146736625 146763179 + protein_coding processed_transcript MGP_CASTEiJ_T0064090.1 MGP_CASTEiJ_G0027106.1 mouse_genomes_project 3 146736747 146763602 + MGP_CASTEiJ_P0064090 protein_coding protein_coding MGP_CASTEiJ_T0064091.1 MGP_CASTEiJ_G0027106.1 mouse_genomes_project 3 146737014 146763583 + MGP_CASTEiJ_P0064091 protein_coding protein_coding MGP_CASTEiJ_T0064092.1 MGP_CASTEiJ_G0027106.1 mouse_genomes_project 3 146737035 146739809 + protein_coding retained_intron MGP_CASTEiJ_T0064093.1 MGP_CASTEiJ_G0027106.1 mouse_genomes_project 3 146744036 146761349 + MGP_CASTEiJ_P0064093 protein_coding protein_coding MGP_CASTEiJ_T0064094.1 MGP_CASTEiJ_G0027106.1 mouse_genomes_project 3 146756469 146757645 + protein_coding retained_intron MGP_CASTEiJ_T0061558.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88211172 88233683 - MGP_CASTEiJ_P0061558 Sema4a protein_coding protein_coding MGP_CASTEiJ_T0061559.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88211175 88227945 - Sema4a protein_coding retained_intron MGP_CASTEiJ_T0061560.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88211175 88223998 - Sema4a protein_coding retained_intron MGP_CASTEiJ_T0061561.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88211175 88216368 - Sema4a protein_coding retained_intron MGP_CASTEiJ_T0061562.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88211175 88233641 - MGP_CASTEiJ_P0061562 Sema4a protein_coding protein_coding MGP_CASTEiJ_T0061563.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88211175 88239135 - MGP_CASTEiJ_P0061563 Sema4a protein_coding protein_coding MGP_CASTEiJ_T0061564.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88211175 88237065 - MGP_CASTEiJ_P0061564 Sema4a protein_coding protein_coding MGP_CASTEiJ_T0061565.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88211175 88236848 - MGP_CASTEiJ_P0061565 Sema4a protein_coding protein_coding MGP_CASTEiJ_T0061566.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88225053 88229358 - MGP_CASTEiJ_P0061566 Sema4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061567.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88225191 88229695 - Sema4a protein_coding retained_intron MGP_CASTEiJ_T0061568.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88227941 88233258 - MGP_CASTEiJ_P0061568 Sema4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061569.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88228003 88237065 - MGP_CASTEiJ_P0061569 Sema4a protein_coding protein_coding MGP_CASTEiJ_T0061570.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88228474 88236994 - MGP_CASTEiJ_P0061570 Sema4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061571.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88228491 88236840 - MGP_CASTEiJ_P0061571 Sema4a protein_coding protein_coding MGP_CASTEiJ_T0061572.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88229952 88233249 - MGP_CASTEiJ_P0061572 Sema4a protein_coding protein_coding MGP_CASTEiJ_T0061573.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88230722 88232786 - Sema4a protein_coding retained_intron MGP_CASTEiJ_T0061574.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88230980 88234359 - MGP_CASTEiJ_P0061574 Sema4a protein_coding protein_coding MGP_CASTEiJ_T0061575.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88232708 88234380 - MGP_CASTEiJ_P0061575 Sema4a protein_coding protein_coding MGP_CASTEiJ_T0061576.1 MGP_CASTEiJ_G0026558.1 mouse_genomes_project 3 88233668 88234380 - Sema4a protein_coding processed_transcript MGP_CASTEiJ_T0007460.1 MGP_CASTEiJ_G0006118.1 mouse_genomes_project 3 102923585 102924899 + Gm43062 lincRNA lincRNA MGP_CASTEiJ_T0059990.1 MGP_CASTEiJ_G0026230.1 mouse_genomes_project 3 7347384 7354443 + MGP_CASTEiJ_P0059990 Fabp5 protein_coding protein_coding MGP_CASTEiJ_T0059991.1 MGP_CASTEiJ_G0026230.1 mouse_genomes_project 3 7347441 7354171 + Fabp5 protein_coding retained_intron MGP_CASTEiJ_T0059992.1 MGP_CASTEiJ_G0026230.1 mouse_genomes_project 3 7347476 7352907 + MGP_CASTEiJ_P0059992 Fabp5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0017232.1 MGP_CASTEiJ_G0014830.1 mouse_genomes_project 3 103713786 103719112 + Gm15471 processed_transcript retained_intron MGP_CASTEiJ_T0017233.1 MGP_CASTEiJ_G0014830.1 mouse_genomes_project 3 103713793 103719113 + Gm15471 processed_transcript antisense MGP_CASTEiJ_T0001143.1 MGP_CASTEiJ_G0001076.1 mouse_genomes_project 3 49971645 49973011 + TEC TEC MGP_CASTEiJ_T0001144.1 MGP_CASTEiJ_G0001076.1 mouse_genomes_project 3 49971700 49973011 + TEC TEC MGP_CASTEiJ_T0061146.1 MGP_CASTEiJ_G0026467.1 mouse_genomes_project 3 74101608 74205995 - MGP_CASTEiJ_P0061146 Zbbx protein_coding protein_coding MGP_CASTEiJ_T0061147.1 MGP_CASTEiJ_G0026467.1 mouse_genomes_project 3 74101666 74227106 - MGP_CASTEiJ_P0061147 Zbbx protein_coding protein_coding MGP_CASTEiJ_T0061148.1 MGP_CASTEiJ_G0026467.1 mouse_genomes_project 3 74122124 74205926 - MGP_CASTEiJ_P0061148 Zbbx protein_coding protein_coding MGP_CASTEiJ_T0061149.1 MGP_CASTEiJ_G0026467.1 mouse_genomes_project 3 74139882 74205995 - MGP_CASTEiJ_P0061149 Zbbx protein_coding protein_coding MGP_CASTEiJ_T0061150.1 MGP_CASTEiJ_G0026467.1 mouse_genomes_project 3 74173299 74227107 - MGP_CASTEiJ_P0061150 Zbbx protein_coding protein_coding MGP_CASTEiJ_T0007307.1 MGP_CASTEiJ_G0006002.1 mouse_genomes_project 3 31994978 31996647 + Gm43208 lincRNA lincRNA MGP_CASTEiJ_T0007437.1 MGP_CASTEiJ_G0006098.1 mouse_genomes_project 3 95914411 95932814 - lincRNA lincRNA MGP_CASTEiJ_T0007438.1 MGP_CASTEiJ_G0006098.1 mouse_genomes_project 3 95914412 95926283 - lincRNA lincRNA MGP_CASTEiJ_T0063880.1 MGP_CASTEiJ_G0027065.1 mouse_genomes_project 3 137205547 137260523 - MGP_CASTEiJ_P0063880 Nfkb1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063882.1 MGP_CASTEiJ_G0027065.1 mouse_genomes_project 3 137227849 137339842 - MGP_CASTEiJ_P0063882 Nfkb1 protein_coding protein_coding MGP_CASTEiJ_T0063883.1 MGP_CASTEiJ_G0027065.1 mouse_genomes_project 3 137227851 137251796 - MGP_CASTEiJ_P0063883 Nfkb1 protein_coding protein_coding MGP_CASTEiJ_T0063884.1 MGP_CASTEiJ_G0027065.1 mouse_genomes_project 3 137227939 137247374 - MGP_CASTEiJ_P0063884 Nfkb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063885.1 MGP_CASTEiJ_G0027065.1 mouse_genomes_project 3 137228076 137252009 - Nfkb1 protein_coding retained_intron MGP_CASTEiJ_T0063886.1 MGP_CASTEiJ_G0027065.1 mouse_genomes_project 3 137228472 137316687 - MGP_CASTEiJ_P0063886 Nfkb1 protein_coding protein_coding MGP_CASTEiJ_T0063887.1 MGP_CASTEiJ_G0027065.1 mouse_genomes_project 3 137228475 137318227 - MGP_CASTEiJ_P0063887 Nfkb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063888.1 MGP_CASTEiJ_G0027065.1 mouse_genomes_project 3 137233508 137237198 - Nfkb1 protein_coding processed_transcript MGP_CASTEiJ_T0063889.1 MGP_CASTEiJ_G0027065.1 mouse_genomes_project 3 137245436 137247437 - Nfkb1 protein_coding retained_intron MGP_CASTEiJ_T0063890.1 MGP_CASTEiJ_G0027065.1 mouse_genomes_project 3 137254118 137339843 - Nfkb1 protein_coding retained_intron MGP_CASTEiJ_T0063891.1 MGP_CASTEiJ_G0027065.1 mouse_genomes_project 3 137262924 137266973 - Nfkb1 protein_coding retained_intron MGP_CASTEiJ_T0004160.1 MGP_CASTEiJ_G0003662.1 mouse_genomes_project 3 93780197 93790712 - Gm43306 antisense antisense MGP_CASTEiJ_T0063390.1 MGP_CASTEiJ_G0026983.1 mouse_genomes_project 3 120545981 120612343 - MGP_CASTEiJ_P0063390 Ptbp2 protein_coding protein_coding MGP_CASTEiJ_T0063391.1 MGP_CASTEiJ_G0026983.1 mouse_genomes_project 3 120545983 120612763 - MGP_CASTEiJ_P0063391 Ptbp2 protein_coding protein_coding MGP_CASTEiJ_T0063392.1 MGP_CASTEiJ_G0026983.1 mouse_genomes_project 3 120547562 120612189 - MGP_CASTEiJ_P0063392 Ptbp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063393.1 MGP_CASTEiJ_G0026983.1 mouse_genomes_project 3 120547587 120553386 - MGP_CASTEiJ_P0063393 Ptbp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063394.1 MGP_CASTEiJ_G0026983.1 mouse_genomes_project 3 120547626 120569743 - Ptbp2 protein_coding retained_intron MGP_CASTEiJ_T0063395.1 MGP_CASTEiJ_G0026983.1 mouse_genomes_project 3 120548053 120551633 - Ptbp2 protein_coding retained_intron MGP_CASTEiJ_T0063396.1 MGP_CASTEiJ_G0026983.1 mouse_genomes_project 3 120551352 120569373 - MGP_CASTEiJ_P0063396 Ptbp2 protein_coding protein_coding MGP_CASTEiJ_T0063397.1 MGP_CASTEiJ_G0026983.1 mouse_genomes_project 3 120567579 120571632 - Ptbp2 protein_coding retained_intron MGP_CASTEiJ_T0063398.1 MGP_CASTEiJ_G0026983.1 mouse_genomes_project 3 120575495 120612241 - MGP_CASTEiJ_P0063398 Ptbp2 protein_coding protein_coding MGP_CASTEiJ_T0063399.1 MGP_CASTEiJ_G0026983.1 mouse_genomes_project 3 120576783 120613423 - Ptbp2 protein_coding processed_transcript MGP_CASTEiJ_T0063400.1 MGP_CASTEiJ_G0026983.1 mouse_genomes_project 3 120590817 120613425 - Ptbp2 protein_coding processed_transcript MGP_CASTEiJ_T0063401.1 MGP_CASTEiJ_G0026983.1 mouse_genomes_project 3 120590822 120612650 - Ptbp2 protein_coding processed_transcript MGP_CASTEiJ_T0063402.1 MGP_CASTEiJ_G0026983.1 mouse_genomes_project 3 120590824 120612262 - MGP_CASTEiJ_P0063402 Ptbp2 protein_coding protein_coding MGP_CASTEiJ_T0013595.1 MGP_CASTEiJ_G0011758.1 mouse_genomes_project 3 45144927 45145930 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101771.1 MGP_CASTEiJ_G0038556.1 mouse_genomes_project 3 57394507 57400514 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101772.1 MGP_CASTEiJ_G0038556.1 mouse_genomes_project 3 57396242 57421085 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0004195.1 MGP_CASTEiJ_G0003685.1 mouse_genomes_project 3 103884524 103888570 - Phtf1os antisense antisense MGP_CASTEiJ_T0013861.1 MGP_CASTEiJ_G0012024.1 mouse_genomes_project 3 134198052 134198440 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007480.1 MGP_CASTEiJ_G0006134.1 mouse_genomes_project 3 116746477 116748783 + Gm43202 lincRNA lincRNA MGP_CASTEiJ_T0060859.1 MGP_CASTEiJ_G0026400.1 mouse_genomes_project 3 56280780 56392202 + MGP_CASTEiJ_P0060859 Rnf13 protein_coding protein_coding MGP_CASTEiJ_T0060860.1 MGP_CASTEiJ_G0026400.1 mouse_genomes_project 3 56280781 56328373 + MGP_CASTEiJ_P0060860 Rnf13 protein_coding protein_coding MGP_CASTEiJ_T0060861.1 MGP_CASTEiJ_G0026400.1 mouse_genomes_project 3 56280793 56363144 + Rnf13 protein_coding processed_transcript MGP_CASTEiJ_T0060862.1 MGP_CASTEiJ_G0026400.1 mouse_genomes_project 3 56280800 56390857 + Rnf13 protein_coding processed_transcript MGP_CASTEiJ_T0060863.1 MGP_CASTEiJ_G0026400.1 mouse_genomes_project 3 56280800 56392204 + MGP_CASTEiJ_P0060863 Rnf13 protein_coding protein_coding MGP_CASTEiJ_T0060864.1 MGP_CASTEiJ_G0026400.1 mouse_genomes_project 3 56280803 56383185 + MGP_CASTEiJ_P0060864 Rnf13 protein_coding protein_coding MGP_CASTEiJ_T0060865.1 MGP_CASTEiJ_G0026400.1 mouse_genomes_project 3 56280831 56392090 + MGP_CASTEiJ_P0060865 Rnf13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060866.1 MGP_CASTEiJ_G0026400.1 mouse_genomes_project 3 56280838 56390201 + MGP_CASTEiJ_P0060866 Rnf13 protein_coding protein_coding MGP_CASTEiJ_T0060867.1 MGP_CASTEiJ_G0026400.1 mouse_genomes_project 3 56280838 56316964 + MGP_CASTEiJ_P0060867 Rnf13 protein_coding protein_coding MGP_CASTEiJ_T0060868.1 MGP_CASTEiJ_G0026400.1 mouse_genomes_project 3 56280838 56353317 + MGP_CASTEiJ_P0060868 Rnf13 protein_coding protein_coding MGP_CASTEiJ_T0060869.1 MGP_CASTEiJ_G0026400.1 mouse_genomes_project 3 56351622 56355476 + Rnf13 protein_coding retained_intron MGP_CASTEiJ_T0061675.1 MGP_CASTEiJ_G0026575.1 mouse_genomes_project 3 88954292 88960354 - MGP_CASTEiJ_P0061675 Rusc1 protein_coding protein_coding MGP_CASTEiJ_T0061676.1 MGP_CASTEiJ_G0026575.1 mouse_genomes_project 3 88954292 88963594 - MGP_CASTEiJ_P0061676 Rusc1 protein_coding protein_coding MGP_CASTEiJ_T0061677.1 MGP_CASTEiJ_G0026575.1 mouse_genomes_project 3 88954292 88963615 - MGP_CASTEiJ_P0061677 Rusc1 protein_coding protein_coding MGP_CASTEiJ_T0061678.1 MGP_CASTEiJ_G0026575.1 mouse_genomes_project 3 88957430 88960050 - Rusc1 protein_coding retained_intron MGP_CASTEiJ_T0061679.1 MGP_CASTEiJ_G0026575.1 mouse_genomes_project 3 88958529 88960284 - MGP_CASTEiJ_P0061679 Rusc1 protein_coding protein_coding MGP_CASTEiJ_T0061680.1 MGP_CASTEiJ_G0026575.1 mouse_genomes_project 3 88959363 88960064 - Rusc1 protein_coding retained_intron MGP_CASTEiJ_T0061681.1 MGP_CASTEiJ_G0026575.1 mouse_genomes_project 3 88959547 88960284 - MGP_CASTEiJ_P0061681 Rusc1 protein_coding protein_coding MGP_CASTEiJ_T0098585.1 MGP_CASTEiJ_G0035516.1 mouse_genomes_project 3 1482043 1482162 + n-R5s194 rRNA rRNA MGP_CASTEiJ_T0062891.1 MGP_CASTEiJ_G0026865.1 mouse_genomes_project 3 104587159 104609248 + MGP_CASTEiJ_P0062891 Slc16a1 protein_coding protein_coding MGP_CASTEiJ_T0004270.1 MGP_CASTEiJ_G0003733.1 mouse_genomes_project 3 147661391 147663430 - 9530034A14Rik antisense antisense MGP_CASTEiJ_T0013565.1 MGP_CASTEiJ_G0011728.1 mouse_genomes_project 3 34791815 34792512 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061487.1 MGP_CASTEiJ_G0026544.1 mouse_genomes_project 3 87793150 87802418 - MGP_CASTEiJ_P0061487 Ttc24 protein_coding protein_coding MGP_CASTEiJ_T0061488.1 MGP_CASTEiJ_G0026544.1 mouse_genomes_project 3 87793553 87795811 - MGP_CASTEiJ_P0061488 Ttc24 protein_coding protein_coding MGP_CASTEiJ_T0007385.1 MGP_CASTEiJ_G0006062.1 mouse_genomes_project 3 73042611 73051959 - Gm20356 lincRNA lincRNA MGP_CASTEiJ_T0013733.1 MGP_CASTEiJ_G0011896.1 mouse_genomes_project 3 92495419 92496110 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004223.1 MGP_CASTEiJ_G0003699.1 mouse_genomes_project 3 116906538 116909314 + Gm29151 antisense antisense MGP_CASTEiJ_T0001346.1 MGP_CASTEiJ_G0001276.1 mouse_genomes_project 3 160922769 160926549 + TEC TEC MGP_CASTEiJ_T0098905.1 MGP_CASTEiJ_G0035829.1 mouse_genomes_project 3 103778818 103780052 + Gm15472 sense_intronic sense_intronic MGP_CASTEiJ_T0063033.1 MGP_CASTEiJ_G0026904.1 mouse_genomes_project 3 107618157 107639940 + MGP_CASTEiJ_P0063033 Slc16a4 protein_coding protein_coding MGP_CASTEiJ_T0063034.1 MGP_CASTEiJ_G0026904.1 mouse_genomes_project 3 107618221 107629491 + Slc16a4 protein_coding retained_intron MGP_CASTEiJ_T0063035.1 MGP_CASTEiJ_G0026904.1 mouse_genomes_project 3 107618242 107634663 + MGP_CASTEiJ_P0063035 Slc16a4 protein_coding protein_coding MGP_CASTEiJ_T0061064.1 MGP_CASTEiJ_G0026445.1 mouse_genomes_project 3 66233851 66239773 - MGP_CASTEiJ_P0061064 Lxn protein_coding protein_coding MGP_CASTEiJ_T0061065.1 MGP_CASTEiJ_G0026445.1 mouse_genomes_project 3 66233854 66237478 - Lxn protein_coding retained_intron MGP_CASTEiJ_T0061066.1 MGP_CASTEiJ_G0026445.1 mouse_genomes_project 3 66236909 66239629 - Lxn protein_coding retained_intron MGP_CASTEiJ_T0013469.1 MGP_CASTEiJ_G0011632.1 mouse_genomes_project 3 3392452 3395382 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013582.1 MGP_CASTEiJ_G0011745.1 mouse_genomes_project 3 40360187 40360678 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062520.1 MGP_CASTEiJ_G0026782.1 mouse_genomes_project 3 96145781 96176225 + MGP_CASTEiJ_P0062520 Lix1l protein_coding protein_coding MGP_CASTEiJ_T0062521.1 MGP_CASTEiJ_G0026782.1 mouse_genomes_project 3 96167549 96172283 + Lix1l protein_coding retained_intron MGP_CASTEiJ_T0013682.1 MGP_CASTEiJ_G0011845.1 mouse_genomes_project 3 73283062 73283400 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062363.1 MGP_CASTEiJ_G0026739.1 mouse_genomes_project 3 94968594 94984816 + MGP_CASTEiJ_P0062363 Ctsk protein_coding protein_coding MGP_CASTEiJ_T0064357.1 MGP_CASTEiJ_G0027151.1 mouse_genomes_project 3 156606798 156617433 + MGP_CASTEiJ_P0064357 Asb17 protein_coding protein_coding MGP_CASTEiJ_T0064358.1 MGP_CASTEiJ_G0027151.1 mouse_genomes_project 3 156606855 156615941 + MGP_CASTEiJ_P0064358 Asb17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064160.1 MGP_CASTEiJ_G0027122.1 mouse_genomes_project 3 148464957 148516566 + MGP_CASTEiJ_P0064160 Mcoln2 protein_coding protein_coding MGP_CASTEiJ_T0064161.1 MGP_CASTEiJ_G0027122.1 mouse_genomes_project 3 148465006 148492212 + Mcoln2 protein_coding retained_intron MGP_CASTEiJ_T0064162.1 MGP_CASTEiJ_G0027122.1 mouse_genomes_project 3 148510197 148512290 + MGP_CASTEiJ_P0064162 Mcoln2 protein_coding protein_coding MGP_CASTEiJ_T0064163.1 MGP_CASTEiJ_G0027122.1 mouse_genomes_project 3 148511886 148516185 + Mcoln2 protein_coding retained_intron MGP_CASTEiJ_T0102266.1 MGP_CASTEiJ_G0038991.1 mouse_genomes_project 3 62875740 63337829 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0064046.1 MGP_CASTEiJ_G0027098.1 mouse_genomes_project 3 144583732 144593238 - MGP_CASTEiJ_P0064046 Gbp5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064047.1 MGP_CASTEiJ_G0027098.1 mouse_genomes_project 3 144583768 144591285 - Gbp5 protein_coding processed_transcript MGP_CASTEiJ_T0064048.1 MGP_CASTEiJ_G0027098.1 mouse_genomes_project 3 144584512 144589093 - Gbp5 protein_coding retained_intron MGP_CASTEiJ_T0013628.1 MGP_CASTEiJ_G0011791.1 mouse_genomes_project 3 57163256 57179422 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013868.1 MGP_CASTEiJ_G0012031.1 mouse_genomes_project 3 136566032 136566485 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010249.1 MGP_CASTEiJ_G0008437.1 mouse_genomes_project 3 94586959 94587087 - Mir8099-1 miRNA miRNA MGP_CASTEiJ_T0007319.1 MGP_CASTEiJ_G0006013.1 mouse_genomes_project 3 34188502 34196202 - Gm11549 lincRNA lincRNA MGP_CASTEiJ_T0099735.1 MGP_CASTEiJ_G0036648.1 mouse_genomes_project 3 96037005 96037208 - Gm24830 snRNA snRNA MGP_CASTEiJ_T0013581.1 MGP_CASTEiJ_G0011744.1 mouse_genomes_project 3 40121235 40121383 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007361.1 MGP_CASTEiJ_G0006044.1 mouse_genomes_project 3 53091115 53094290 + Gm26678 lincRNA lincRNA MGP_CASTEiJ_T0061016.1 MGP_CASTEiJ_G0026437.1 mouse_genomes_project 3 64433319 64455311 + MGP_CASTEiJ_P0061016 Lekr1 protein_coding protein_coding MGP_CASTEiJ_T0061017.1 MGP_CASTEiJ_G0026437.1 mouse_genomes_project 3 64433326 64451929 + Lekr1 protein_coding processed_transcript MGP_CASTEiJ_T0061018.1 MGP_CASTEiJ_G0026437.1 mouse_genomes_project 3 64433337 64512959 + Lekr1 protein_coding processed_transcript MGP_CASTEiJ_T0061019.1 MGP_CASTEiJ_G0026437.1 mouse_genomes_project 3 64433359 64435526 + Lekr1 protein_coding retained_intron MGP_CASTEiJ_T0061020.1 MGP_CASTEiJ_G0026437.1 mouse_genomes_project 3 64433373 64558416 + Lekr1 protein_coding processed_transcript MGP_CASTEiJ_T0061021.1 MGP_CASTEiJ_G0026437.1 mouse_genomes_project 3 64433408 64502449 + Lekr1 protein_coding processed_transcript MGP_CASTEiJ_T0061022.1 MGP_CASTEiJ_G0026437.1 mouse_genomes_project 3 64451757 64621962 + Lekr1 protein_coding processed_transcript MGP_CASTEiJ_T0013643.1 MGP_CASTEiJ_G0011806.1 mouse_genomes_project 3 60810002 60812251 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004110.1 MGP_CASTEiJ_G0003625.1 mouse_genomes_project 3 50585249 50586251 - Gm20402 antisense antisense MGP_CASTEiJ_T0001291.1 MGP_CASTEiJ_G0001221.1 mouse_genomes_project 3 130755379 130768966 + TEC TEC MGP_CASTEiJ_T0063370.1 MGP_CASTEiJ_G0026977.1 mouse_genomes_project 3 117515284 117570268 - MGP_CASTEiJ_P0063370 Palmd protein_coding protein_coding MGP_CASTEiJ_T0063371.1 MGP_CASTEiJ_G0026977.1 mouse_genomes_project 3 117518716 117570139 - MGP_CASTEiJ_P0063371 Palmd protein_coding protein_coding MGP_CASTEiJ_T0063372.1 MGP_CASTEiJ_G0026977.1 mouse_genomes_project 3 117524115 117570267 - MGP_CASTEiJ_P0063372 Palmd protein_coding protein_coding MGP_CASTEiJ_T0063373.1 MGP_CASTEiJ_G0026977.1 mouse_genomes_project 3 117566330 117570024 - Palmd protein_coding retained_intron MGP_CASTEiJ_T0064183.1 MGP_CASTEiJ_G0027127.1 mouse_genomes_project 3 148841070 148848255 + MGP_CASTEiJ_P0064183 Gng5 protein_coding protein_coding MGP_CASTEiJ_T0064184.1 MGP_CASTEiJ_G0027127.1 mouse_genomes_project 3 148841153 148846713 + MGP_CASTEiJ_P0064184 Gng5 protein_coding protein_coding MGP_CASTEiJ_T0064185.1 MGP_CASTEiJ_G0027127.1 mouse_genomes_project 3 148841372 148848231 + MGP_CASTEiJ_P0064185 Gng5 protein_coding protein_coding MGP_CASTEiJ_T0001319.1 MGP_CASTEiJ_G0001249.1 mouse_genomes_project 3 148652176 148653500 + TEC TEC MGP_CASTEiJ_T0064292.1 MGP_CASTEiJ_G0027143.1 mouse_genomes_project 3 154908574 154938645 - MGP_CASTEiJ_P0064292 Nexn protein_coding protein_coding MGP_CASTEiJ_T0064293.1 MGP_CASTEiJ_G0027143.1 mouse_genomes_project 3 154908574 154938094 - MGP_CASTEiJ_P0064293 Nexn protein_coding protein_coding MGP_CASTEiJ_T0064294.1 MGP_CASTEiJ_G0027143.1 mouse_genomes_project 3 154909153 154926885 - MGP_CASTEiJ_P0064294 Nexn protein_coding protein_coding MGP_CASTEiJ_T0064295.1 MGP_CASTEiJ_G0027143.1 mouse_genomes_project 3 154909201 154919830 - MGP_CASTEiJ_P0064295 Nexn protein_coding protein_coding MGP_CASTEiJ_T0064296.1 MGP_CASTEiJ_G0027143.1 mouse_genomes_project 3 154909238 154926885 - MGP_CASTEiJ_P0064296 Nexn protein_coding protein_coding MGP_CASTEiJ_T0064297.1 MGP_CASTEiJ_G0027143.1 mouse_genomes_project 3 154909843 154916379 - Nexn protein_coding processed_transcript MGP_CASTEiJ_T0064298.1 MGP_CASTEiJ_G0027143.1 mouse_genomes_project 3 154914292 154915691 - Nexn protein_coding retained_intron MGP_CASTEiJ_T0064299.1 MGP_CASTEiJ_G0027143.1 mouse_genomes_project 3 154915510 154938095 - MGP_CASTEiJ_P0064299 Nexn protein_coding protein_coding MGP_CASTEiJ_T0064300.1 MGP_CASTEiJ_G0027143.1 mouse_genomes_project 3 154915566 154926931 - MGP_CASTEiJ_P0064300 Nexn protein_coding protein_coding MGP_CASTEiJ_T0064301.1 MGP_CASTEiJ_G0027143.1 mouse_genomes_project 3 154919586 154920030 - Nexn protein_coding retained_intron MGP_CASTEiJ_T0064302.1 MGP_CASTEiJ_G0027143.1 mouse_genomes_project 3 154919597 154938122 - MGP_CASTEiJ_P0064302 Nexn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064303.1 MGP_CASTEiJ_G0027143.1 mouse_genomes_project 3 154919628 154935843 - MGP_CASTEiJ_P0064303 Nexn protein_coding protein_coding MGP_CASTEiJ_T0064304.1 MGP_CASTEiJ_G0027143.1 mouse_genomes_project 3 154919646 154933881 - MGP_CASTEiJ_P0064304 Nexn protein_coding protein_coding MGP_CASTEiJ_T0064305.1 MGP_CASTEiJ_G0027143.1 mouse_genomes_project 3 154919748 154934865 - MGP_CASTEiJ_P0064305 Nexn protein_coding protein_coding MGP_CASTEiJ_T0064306.1 MGP_CASTEiJ_G0027143.1 mouse_genomes_project 3 154924083 154938677 - Nexn protein_coding retained_intron MGP_CASTEiJ_T0064307.1 MGP_CASTEiJ_G0027143.1 mouse_genomes_project 3 154924296 154924665 - Nexn protein_coding retained_intron MGP_CASTEiJ_T0001302.1 MGP_CASTEiJ_G0001232.1 mouse_genomes_project 3 133095888 133099262 - TEC TEC MGP_CASTEiJ_T0062639.1 MGP_CASTEiJ_G0026808.1 mouse_genomes_project 3 97908918 97923701 + MGP_CASTEiJ_P0062639 Reg4 protein_coding protein_coding MGP_CASTEiJ_T0059993.1 MGP_CASTEiJ_G0026231.1 mouse_genomes_project 3 7534650 7538711 - MGP_CASTEiJ_P0059993 Pmp2 protein_coding protein_coding MGP_CASTEiJ_T0013914.1 MGP_CASTEiJ_G0012077.1 mouse_genomes_project 3 154611714 154612192 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064436.1 MGP_CASTEiJ_G0027164.1 mouse_genomes_project 3 160449191 160464518 + MGP_CASTEiJ_P0064436 Zranb2 protein_coding protein_coding MGP_CASTEiJ_T0064437.1 MGP_CASTEiJ_G0027164.1 mouse_genomes_project 3 160449390 160464444 + MGP_CASTEiJ_P0064437 Zranb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064438.1 MGP_CASTEiJ_G0027164.1 mouse_genomes_project 3 160449390 160464444 + MGP_CASTEiJ_P0064438 Zranb2 protein_coding protein_coding MGP_CASTEiJ_T0064439.1 MGP_CASTEiJ_G0027164.1 mouse_genomes_project 3 160449407 160459311 + MGP_CASTEiJ_P0064439 Zranb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064440.1 MGP_CASTEiJ_G0027164.1 mouse_genomes_project 3 160449419 160464484 + MGP_CASTEiJ_P0064440 Zranb2 protein_coding protein_coding MGP_CASTEiJ_T0064441.1 MGP_CASTEiJ_G0027164.1 mouse_genomes_project 3 160449456 160463033 + Zranb2 protein_coding retained_intron MGP_CASTEiJ_T0064442.1 MGP_CASTEiJ_G0027164.1 mouse_genomes_project 3 160455156 160457875 + Zranb2 protein_coding retained_intron MGP_CASTEiJ_T0064443.1 MGP_CASTEiJ_G0027164.1 mouse_genomes_project 3 160456757 160462913 + MGP_CASTEiJ_P0064443 Zranb2 protein_coding protein_coding MGP_CASTEiJ_T0013710.1 MGP_CASTEiJ_G0011873.1 mouse_genomes_project 3 85527038 85527326 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013906.1 MGP_CASTEiJ_G0012069.1 mouse_genomes_project 3 148014969 148015402 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102288.1 MGP_CASTEiJ_G0039013.1 mouse_genomes_project 3 92403121 92403346 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0063259.1 MGP_CASTEiJ_G0026955.1 mouse_genomes_project 3 113969416 113982549 - MGP_CASTEiJ_P0063259 protein_coding protein_coding MGP_CASTEiJ_T0001098.1 MGP_CASTEiJ_G0001031.1 mouse_genomes_project 3 32258065 32258697 - TEC TEC MGP_CASTEiJ_T0063125.1 MGP_CASTEiJ_G0026928.1 mouse_genomes_project 3 108577883 108586594 - MGP_CASTEiJ_P0063125 Atxn7l2 protein_coding protein_coding MGP_CASTEiJ_T0063126.1 MGP_CASTEiJ_G0026928.1 mouse_genomes_project 3 108577883 108586146 - MGP_CASTEiJ_P0063126 Atxn7l2 protein_coding protein_coding MGP_CASTEiJ_T0063127.1 MGP_CASTEiJ_G0026928.1 mouse_genomes_project 3 108577889 108584242 - Atxn7l2 protein_coding retained_intron MGP_CASTEiJ_T0063128.1 MGP_CASTEiJ_G0026928.1 mouse_genomes_project 3 108577889 108586122 - MGP_CASTEiJ_P0063128 Atxn7l2 protein_coding protein_coding MGP_CASTEiJ_T0063129.1 MGP_CASTEiJ_G0026928.1 mouse_genomes_project 3 108577901 108586126 - MGP_CASTEiJ_P0063129 Atxn7l2 protein_coding protein_coding MGP_CASTEiJ_T0063130.1 MGP_CASTEiJ_G0026928.1 mouse_genomes_project 3 108582741 108585231 - MGP_CASTEiJ_P0063130 Atxn7l2 protein_coding protein_coding MGP_CASTEiJ_T0063131.1 MGP_CASTEiJ_G0026928.1 mouse_genomes_project 3 108584641 108586128 - Atxn7l2 protein_coding processed_transcript MGP_CASTEiJ_T0101000.1 MGP_CASTEiJ_G0037913.1 mouse_genomes_project 3 134344410 134344521 - Gm22322 snoRNA snoRNA MGP_CASTEiJ_T0013638.1 MGP_CASTEiJ_G0011801.1 mouse_genomes_project 3 59465852 59466010 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063151.1 MGP_CASTEiJ_G0026934.1 mouse_genomes_project 3 108778702 108803527 - MGP_CASTEiJ_P0063151 Celsr2 protein_coding protein_coding MGP_CASTEiJ_T0063152.1 MGP_CASTEiJ_G0026934.1 mouse_genomes_project 3 108780188 108786924 - MGP_CASTEiJ_P0063152 Celsr2 protein_coding protein_coding MGP_CASTEiJ_T0063153.1 MGP_CASTEiJ_G0026934.1 mouse_genomes_project 3 108780350 108781405 - Celsr2 protein_coding processed_transcript MGP_CASTEiJ_T0063154.1 MGP_CASTEiJ_G0026934.1 mouse_genomes_project 3 108780571 108781496 - Celsr2 protein_coding retained_intron MGP_CASTEiJ_T0063155.1 MGP_CASTEiJ_G0026934.1 mouse_genomes_project 3 108781506 108782274 - Celsr2 protein_coding retained_intron MGP_CASTEiJ_T0063156.1 MGP_CASTEiJ_G0026934.1 mouse_genomes_project 3 108783529 108784464 - Celsr2 protein_coding retained_intron MGP_CASTEiJ_T0063157.1 MGP_CASTEiJ_G0026934.1 mouse_genomes_project 3 108789231 108790566 - Celsr2 protein_coding retained_intron MGP_CASTEiJ_T0001215.1 MGP_CASTEiJ_G0001146.1 mouse_genomes_project 3 95471055 95473533 + TEC TEC MGP_CASTEiJ_T0062127.1 MGP_CASTEiJ_G0026699.1 mouse_genomes_project 3 93753469 93758721 + MGP_CASTEiJ_P0062127 Them5 protein_coding protein_coding MGP_CASTEiJ_T0062128.1 MGP_CASTEiJ_G0026699.1 mouse_genomes_project 3 93753629 93758719 + MGP_CASTEiJ_P0062128 Them5 protein_coding protein_coding MGP_CASTEiJ_T0063108.1 MGP_CASTEiJ_G0026923.1 mouse_genomes_project 3 108451598 108466232 + MGP_CASTEiJ_P0063108 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063109.1 MGP_CASTEiJ_G0026923.1 mouse_genomes_project 3 108457730 108461778 + MGP_CASTEiJ_P0063109 protein_coding protein_coding MGP_CASTEiJ_T0063110.1 MGP_CASTEiJ_G0026923.1 mouse_genomes_project 3 108457988 108463817 + MGP_CASTEiJ_P0063110 protein_coding protein_coding MGP_CASTEiJ_T0063111.1 MGP_CASTEiJ_G0026923.1 mouse_genomes_project 3 108458042 108466859 + protein_coding retained_intron MGP_CASTEiJ_T0063112.1 MGP_CASTEiJ_G0026923.1 mouse_genomes_project 3 108459298 108463832 + MGP_CASTEiJ_P0063112 protein_coding protein_coding MGP_CASTEiJ_T0063113.1 MGP_CASTEiJ_G0026923.1 mouse_genomes_project 3 108462642 108466720 + protein_coding processed_transcript MGP_CASTEiJ_T0017183.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 31666009 31668708 + processed_transcript retained_intron MGP_CASTEiJ_T0017184.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 31666177 32231403 + processed_transcript sense_overlapping MGP_CASTEiJ_T0017185.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 31666197 32270479 + processed_transcript sense_overlapping MGP_CASTEiJ_T0017186.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 31763817 32231478 + processed_transcript sense_overlapping MGP_CASTEiJ_T0017187.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 31763930 32093199 + processed_transcript sense_overlapping MGP_CASTEiJ_T0017188.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 32138645 32270303 + processed_transcript sense_overlapping MGP_CASTEiJ_T0017189.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 32138700 32272445 + processed_transcript sense_overlapping MGP_CASTEiJ_T0017190.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 32138707 32156516 + processed_transcript sense_overlapping MGP_CASTEiJ_T0017191.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 32138711 32231441 + processed_transcript sense_overlapping MGP_CASTEiJ_T0017192.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 32139035 32139102 + processed_transcript misc_RNA MGP_CASTEiJ_T0017193.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 32174925 32270443 + processed_transcript sense_overlapping MGP_CASTEiJ_T0017194.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 32228443 32272445 + processed_transcript sense_overlapping MGP_CASTEiJ_T0017195.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 32231170 32270346 + processed_transcript sense_overlapping MGP_CASTEiJ_T0017196.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 32231248 32275315 + processed_transcript sense_overlapping MGP_CASTEiJ_T0017197.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 32231291 32275278 + processed_transcript sense_overlapping MGP_CASTEiJ_T0017198.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 32231498 32276893 + processed_transcript sense_overlapping MGP_CASTEiJ_T0017199.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 32248953 32270587 + processed_transcript sense_overlapping MGP_CASTEiJ_T0017200.1 MGP_CASTEiJ_G0014814.1 mouse_genomes_project 3 32259651 32272447 + processed_transcript sense_overlapping MGP_CASTEiJ_T0010266.1 MGP_CASTEiJ_G0008454.1 mouse_genomes_project 3 128759764 128759839 + Mir367 miRNA miRNA MGP_CASTEiJ_T0061896.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89951857 90005067 - MGP_CASTEiJ_P0061896 Ubap2l protein_coding protein_coding MGP_CASTEiJ_T0061897.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89951857 90005077 - MGP_CASTEiJ_P0061897 Ubap2l protein_coding protein_coding MGP_CASTEiJ_T0061898.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89952005 90005087 - MGP_CASTEiJ_P0061898 Ubap2l protein_coding protein_coding MGP_CASTEiJ_T0061899.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89952010 90005074 - MGP_CASTEiJ_P0061899 Ubap2l protein_coding protein_coding MGP_CASTEiJ_T0061900.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89952516 89954985 - MGP_CASTEiJ_P0061900 Ubap2l protein_coding protein_coding MGP_CASTEiJ_T0061901.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89954101 89955482 - Ubap2l protein_coding retained_intron MGP_CASTEiJ_T0061902.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89957676 90005064 - MGP_CASTEiJ_P0061902 Ubap2l protein_coding protein_coding MGP_CASTEiJ_T0061903.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89957891 89973009 - MGP_CASTEiJ_P0061903 Ubap2l protein_coding protein_coding MGP_CASTEiJ_T0061904.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89957892 90005127 - MGP_CASTEiJ_P0061904 Ubap2l protein_coding protein_coding MGP_CASTEiJ_T0061905.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89957892 90005084 - MGP_CASTEiJ_P0061905 Ubap2l protein_coding protein_coding MGP_CASTEiJ_T0061906.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89965870 89968005 - Ubap2l protein_coding retained_intron MGP_CASTEiJ_T0061907.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89966043 89972306 - Ubap2l protein_coding retained_intron MGP_CASTEiJ_T0061908.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89966725 90004943 - Ubap2l protein_coding retained_intron MGP_CASTEiJ_T0061909.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89967847 89969339 - Ubap2l protein_coding retained_intron MGP_CASTEiJ_T0061910.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89968262 89970214 - Ubap2l protein_coding retained_intron MGP_CASTEiJ_T0061911.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89971962 89979152 - Ubap2l protein_coding retained_intron MGP_CASTEiJ_T0061912.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89973750 89975152 - Ubap2l protein_coding retained_intron MGP_CASTEiJ_T0061913.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89988371 89990766 - Ubap2l protein_coding retained_intron MGP_CASTEiJ_T0061914.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89990889 90004693 - MGP_CASTEiJ_P0061914 Ubap2l protein_coding protein_coding MGP_CASTEiJ_T0061915.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89994337 90005114 - Ubap2l protein_coding retained_intron MGP_CASTEiJ_T0061916.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89996287 90005240 - MGP_CASTEiJ_P0061916 Ubap2l protein_coding protein_coding MGP_CASTEiJ_T0061917.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89996357 90005050 - MGP_CASTEiJ_P0061917 Ubap2l protein_coding protein_coding MGP_CASTEiJ_T0061918.1 MGP_CASTEiJ_G0026612.1 mouse_genomes_project 3 89997396 90000913 - MGP_CASTEiJ_P0061918 Ubap2l protein_coding protein_coding MGP_CASTEiJ_T0013693.1 MGP_CASTEiJ_G0011856.1 mouse_genomes_project 3 77312278 77313844 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013695.1 MGP_CASTEiJ_G0011858.1 mouse_genomes_project 3 77359185 77360084 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061056.1 MGP_CASTEiJ_G0026443.1 mouse_genomes_project 3 66144555 66175690 + MGP_CASTEiJ_P0061056 Mlf1 protein_coding protein_coding MGP_CASTEiJ_T0061057.1 MGP_CASTEiJ_G0026443.1 mouse_genomes_project 3 66144583 66153184 + Mlf1 protein_coding processed_transcript MGP_CASTEiJ_T0061058.1 MGP_CASTEiJ_G0026443.1 mouse_genomes_project 3 66144600 66171017 + MGP_CASTEiJ_P0061058 Mlf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061059.1 MGP_CASTEiJ_G0026443.1 mouse_genomes_project 3 66144606 66175695 + MGP_CASTEiJ_P0061059 Mlf1 protein_coding protein_coding MGP_CASTEiJ_T0013723.1 MGP_CASTEiJ_G0011886.1 mouse_genomes_project 3 90676962 90677115 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013779.1 MGP_CASTEiJ_G0011942.1 mouse_genomes_project 3 103820289 103820754 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100936.1 MGP_CASTEiJ_G0037849.1 mouse_genomes_project 3 1730332 1730465 - Gm22944 snoRNA snoRNA MGP_CASTEiJ_T0101591.1 MGP_CASTEiJ_G0038456.1 mouse_genomes_project 3 96152731 96181701 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101592.1 MGP_CASTEiJ_G0038456.1 mouse_genomes_project 3 96152734 96181700 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101593.1 MGP_CASTEiJ_G0038456.1 mouse_genomes_project 3 96153696 96155218 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0004247.1 MGP_CASTEiJ_G0003718.1 mouse_genomes_project 3 132668201 132671284 - Gm43352 antisense antisense MGP_CASTEiJ_T0102295.1 MGP_CASTEiJ_G0039020.1 mouse_genomes_project 3 108260427 108264897 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0060276.1 MGP_CASTEiJ_G0026296.1 mouse_genomes_project 3 28362239 28387151 + Gpr160 protein_coding retained_intron MGP_CASTEiJ_T0060277.1 MGP_CASTEiJ_G0026296.1 mouse_genomes_project 3 28362239 28406230 + MGP_CASTEiJ_P0060277 Gpr160 protein_coding protein_coding MGP_CASTEiJ_T0060278.1 MGP_CASTEiJ_G0026296.1 mouse_genomes_project 3 28362239 28406230 + MGP_CASTEiJ_P0060278 Gpr160 protein_coding protein_coding MGP_CASTEiJ_T0060279.1 MGP_CASTEiJ_G0026296.1 mouse_genomes_project 3 28362239 28406232 + MGP_CASTEiJ_P0060279 Gpr160 protein_coding protein_coding MGP_CASTEiJ_T0060280.1 MGP_CASTEiJ_G0026296.1 mouse_genomes_project 3 28362278 28406230 + MGP_CASTEiJ_P0060280 Gpr160 protein_coding protein_coding MGP_CASTEiJ_T0060281.1 MGP_CASTEiJ_G0026296.1 mouse_genomes_project 3 28362282 28404836 + MGP_CASTEiJ_P0060281 Gpr160 protein_coding protein_coding MGP_CASTEiJ_T0060282.1 MGP_CASTEiJ_G0026296.1 mouse_genomes_project 3 28362304 28406230 + MGP_CASTEiJ_P0060282 Gpr160 protein_coding protein_coding MGP_CASTEiJ_T0060283.1 MGP_CASTEiJ_G0026296.1 mouse_genomes_project 3 28362432 28404865 + MGP_CASTEiJ_P0060283 Gpr160 protein_coding protein_coding MGP_CASTEiJ_T0061888.1 MGP_CASTEiJ_G0026611.1 mouse_genomes_project 3 89947171 89950295 - MGP_CASTEiJ_P0061888 Hax1 protein_coding protein_coding MGP_CASTEiJ_T0061889.1 MGP_CASTEiJ_G0026611.1 mouse_genomes_project 3 89947175 89950381 - MGP_CASTEiJ_P0061889 Hax1 protein_coding protein_coding MGP_CASTEiJ_T0061890.1 MGP_CASTEiJ_G0026611.1 mouse_genomes_project 3 89947178 89947676 - Hax1 protein_coding retained_intron MGP_CASTEiJ_T0061891.1 MGP_CASTEiJ_G0026611.1 mouse_genomes_project 3 89947179 89950401 - Hax1 protein_coding retained_intron MGP_CASTEiJ_T0061892.1 MGP_CASTEiJ_G0026611.1 mouse_genomes_project 3 89947431 89948059 - Hax1 protein_coding retained_intron MGP_CASTEiJ_T0061893.1 MGP_CASTEiJ_G0026611.1 mouse_genomes_project 3 89947616 89950395 - MGP_CASTEiJ_P0061893 Hax1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061894.1 MGP_CASTEiJ_G0026611.1 mouse_genomes_project 3 89949234 89950498 - Hax1 protein_coding retained_intron MGP_CASTEiJ_T0061895.1 MGP_CASTEiJ_G0026611.1 mouse_genomes_project 3 89949484 89950077 - MGP_CASTEiJ_P0061895 Hax1 protein_coding protein_coding MGP_CASTEiJ_T0061481.1 MGP_CASTEiJ_G0026542.1 mouse_genomes_project 3 87768461 87781770 + MGP_CASTEiJ_P0061481 protein_coding protein_coding MGP_CASTEiJ_T0061482.1 MGP_CASTEiJ_G0026542.1 mouse_genomes_project 3 87768597 87781708 + MGP_CASTEiJ_P0061482 protein_coding protein_coding MGP_CASTEiJ_T0061483.1 MGP_CASTEiJ_G0026542.1 mouse_genomes_project 3 87768597 87781705 + MGP_CASTEiJ_P0061483 protein_coding protein_coding MGP_CASTEiJ_T0061484.1 MGP_CASTEiJ_G0026542.1 mouse_genomes_project 3 87768598 87779539 + protein_coding retained_intron MGP_CASTEiJ_T0061485.1 MGP_CASTEiJ_G0026542.1 mouse_genomes_project 3 87768613 87781178 + MGP_CASTEiJ_P0061485 protein_coding protein_coding MGP_CASTEiJ_T0099745.1 MGP_CASTEiJ_G0036658.1 mouse_genomes_project 3 117015328 117015504 - Gm22361 snRNA snRNA MGP_CASTEiJ_T0001241.1 MGP_CASTEiJ_G0001172.1 mouse_genomes_project 3 117540221 117544190 - TEC TEC MGP_CASTEiJ_T0098897.1 MGP_CASTEiJ_G0035821.1 mouse_genomes_project 3 101951606 101952886 + Gm43244 sense_intronic sense_intronic MGP_CASTEiJ_T0013717.1 MGP_CASTEiJ_G0011880.1 mouse_genomes_project 3 87644542 87654834 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062958.1 MGP_CASTEiJ_G0026882.1 mouse_genomes_project 3 105975146 105994453 - MGP_CASTEiJ_P0062958 Atp5f1 protein_coding protein_coding MGP_CASTEiJ_T0062959.1 MGP_CASTEiJ_G0026882.1 mouse_genomes_project 3 105975150 105993629 - MGP_CASTEiJ_P0062959 Atp5f1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062960.1 MGP_CASTEiJ_G0026882.1 mouse_genomes_project 3 105975346 105988469 - MGP_CASTEiJ_P0062960 Atp5f1 protein_coding protein_coding MGP_CASTEiJ_T0062961.1 MGP_CASTEiJ_G0026882.1 mouse_genomes_project 3 105987954 105993617 - Atp5f1 protein_coding retained_intron MGP_CASTEiJ_T0062962.1 MGP_CASTEiJ_G0026882.1 mouse_genomes_project 3 105988114 105990328 - Atp5f1 protein_coding retained_intron MGP_CASTEiJ_T0062963.1 MGP_CASTEiJ_G0026882.1 mouse_genomes_project 3 105992943 105993599 - Atp5f1 protein_coding retained_intron MGP_CASTEiJ_T0062098.1 MGP_CASTEiJ_G0026681.1 mouse_genomes_project 3 92156099 92157948 - MGP_CASTEiJ_P0062098 2310050C09Rik protein_coding protein_coding MGP_CASTEiJ_T0061435.1 MGP_CASTEiJ_G0026532.1 mouse_genomes_project 3 87507380 87526539 + MGP_CASTEiJ_P0061435 Insrr protein_coding protein_coding MGP_CASTEiJ_T0061436.1 MGP_CASTEiJ_G0026532.1 mouse_genomes_project 3 87507394 87515552 + Insrr protein_coding retained_intron MGP_CASTEiJ_T0061437.1 MGP_CASTEiJ_G0026532.1 mouse_genomes_project 3 87507523 87526490 + MGP_CASTEiJ_P0061437 Insrr protein_coding protein_coding MGP_CASTEiJ_T0061438.1 MGP_CASTEiJ_G0026532.1 mouse_genomes_project 3 87512363 87513229 + Insrr protein_coding processed_transcript MGP_CASTEiJ_T0060063.1 MGP_CASTEiJ_G0026255.1 mouse_genomes_project 3 15185688 15186243 + MGP_CASTEiJ_P0060063 Cypt12 protein_coding protein_coding MGP_CASTEiJ_T0061411.1 MGP_CASTEiJ_G0026529.1 mouse_genomes_project 3 87444994 87456669 - MGP_CASTEiJ_P0061411 Lrrc71 protein_coding protein_coding MGP_CASTEiJ_T0061412.1 MGP_CASTEiJ_G0026529.1 mouse_genomes_project 3 87445966 87456671 - Lrrc71 protein_coding retained_intron MGP_CASTEiJ_T0061413.1 MGP_CASTEiJ_G0026529.1 mouse_genomes_project 3 87446017 87446643 - Lrrc71 protein_coding processed_transcript MGP_CASTEiJ_T0061414.1 MGP_CASTEiJ_G0026529.1 mouse_genomes_project 3 87447055 87449115 - MGP_CASTEiJ_P0061414 Lrrc71 protein_coding protein_coding MGP_CASTEiJ_T0061415.1 MGP_CASTEiJ_G0026529.1 mouse_genomes_project 3 87447150 87456510 - MGP_CASTEiJ_P0061415 Lrrc71 protein_coding unknown_likely_coding MGP_CASTEiJ_T0061416.1 MGP_CASTEiJ_G0026529.1 mouse_genomes_project 3 87453316 87456640 - Lrrc71 protein_coding retained_intron MGP_CASTEiJ_T0004201.1 MGP_CASTEiJ_G0003690.1 mouse_genomes_project 3 107218270 107393490 - Gm27008 antisense antisense MGP_CASTEiJ_T0004202.1 MGP_CASTEiJ_G0003690.1 mouse_genomes_project 3 107234390 107396999 - Gm27008 antisense antisense MGP_CASTEiJ_T0013685.1 MGP_CASTEiJ_G0011848.1 mouse_genomes_project 3 74452398 74453693 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099731.1 MGP_CASTEiJ_G0036644.1 mouse_genomes_project 3 95912790 95912955 + Rnu1b1 snRNA snRNA MGP_CASTEiJ_T0061067.1 MGP_CASTEiJ_G0026446.1 mouse_genomes_project 3 66255798 66295011 - MGP_CASTEiJ_P0061067 Rarres1 protein_coding protein_coding MGP_CASTEiJ_T0063260.1 MGP_CASTEiJ_G0026956.1 mouse_genomes_project 3 114011092 114036777 - MGP_CASTEiJ_P0063260 Amy1 protein_coding protein_coding MGP_CASTEiJ_T0063261.1 MGP_CASTEiJ_G0026956.1 mouse_genomes_project 3 114011356 114033710 - MGP_CASTEiJ_P0063261 Amy1 protein_coding protein_coding MGP_CASTEiJ_T0063262.1 MGP_CASTEiJ_G0026956.1 mouse_genomes_project 3 114011552 114017437 - Amy1 protein_coding retained_intron MGP_CASTEiJ_T0063263.1 MGP_CASTEiJ_G0026956.1 mouse_genomes_project 3 114018108 114033220 - MGP_CASTEiJ_P0063263 Amy1 protein_coding protein_coding MGP_CASTEiJ_T0063264.1 MGP_CASTEiJ_G0026956.1 mouse_genomes_project 3 114020961 114070307 - MGP_CASTEiJ_P0063264 Amy1 protein_coding protein_coding MGP_CASTEiJ_T0060020.1 MGP_CASTEiJ_G0026240.1 mouse_genomes_project 3 7733560 7761053 + MGP_CASTEiJ_P0060020 Chmp4c protein_coding protein_coding MGP_CASTEiJ_T0060021.1 MGP_CASTEiJ_G0026240.1 mouse_genomes_project 3 7733625 7806536 + MGP_CASTEiJ_P0060021 Chmp4c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013747.1 MGP_CASTEiJ_G0011910.1 mouse_genomes_project 3 95410492 95414026 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060218.1 MGP_CASTEiJ_G0026285.1 mouse_genomes_project 3 26173460 26191093 + MGP_CASTEiJ_P0060218 Eif5a2 protein_coding protein_coding MGP_CASTEiJ_T0098900.1 MGP_CASTEiJ_G0035824.1 mouse_genomes_project 3 102949500 102950727 + Gm43063 sense_intronic sense_intronic MGP_CASTEiJ_T0007351.1 MGP_CASTEiJ_G0006035.1 mouse_genomes_project 3 50436449 50531005 - Gm37202 lincRNA lincRNA MGP_CASTEiJ_T0062090.1 MGP_CASTEiJ_G0026674.1 mouse_genomes_project 3 92019974 92021407 - MGP_CASTEiJ_P0062090 protein_coding protein_coding MGP_CASTEiJ_T0017273.1 MGP_CASTEiJ_G0014843.1 mouse_genomes_project 3 144975043 145000161 + Gm43646 processed_transcript processed_transcript MGP_CASTEiJ_T0001290.1 MGP_CASTEiJ_G0001220.1 mouse_genomes_project 3 130609677 130612289 - TEC TEC MGP_CASTEiJ_T0001350.1 MGP_CASTEiJ_G0001280.1 mouse_genomes_project 3 161247645 161252014 + TEC TEC MGP_CASTEiJ_T0007404.1 MGP_CASTEiJ_G0006077.1 mouse_genomes_project 3 82868665 82871053 + Gm38096 lincRNA lincRNA MGP_CASTEiJ_T0001256.1 MGP_CASTEiJ_G0001187.1 mouse_genomes_project 3 122939906 122947806 + TEC TEC MGP_CASTEiJ_T0013658.1 MGP_CASTEiJ_G0011821.1 mouse_genomes_project 3 64999856 65000009 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001168.1 MGP_CASTEiJ_G0001099.1 mouse_genomes_project 3 54082038 54084421 + TEC TEC MGP_CASTEiJ_T0011217.1 MGP_CASTEiJ_G0009405.1 mouse_genomes_project 3 102935671 102935971 + Gm23820 misc_RNA misc_RNA MGP_CASTEiJ_T0062923.1 MGP_CASTEiJ_G0026872.1 mouse_genomes_project 3 104915666 104933575 - MGP_CASTEiJ_P0062923 Wnt2b protein_coding protein_coding MGP_CASTEiJ_T0062924.1 MGP_CASTEiJ_G0026872.1 mouse_genomes_project 3 104932068 104933375 - Wnt2b protein_coding retained_intron MGP_CASTEiJ_T0001266.1 MGP_CASTEiJ_G0001197.1 mouse_genomes_project 3 127556355 127560425 + TEC TEC MGP_CASTEiJ_T0013614.1 MGP_CASTEiJ_G0011777.1 mouse_genomes_project 3 52053578 52054045 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062925.1 MGP_CASTEiJ_G0026873.1 mouse_genomes_project 3 104970728 105024723 - MGP_CASTEiJ_P0062925 Cttnbp2nl protein_coding protein_coding MGP_CASTEiJ_T0062926.1 MGP_CASTEiJ_G0026873.1 mouse_genomes_project 3 104970730 105024528 - MGP_CASTEiJ_P0062926 Cttnbp2nl protein_coding protein_coding MGP_CASTEiJ_T0062927.1 MGP_CASTEiJ_G0026873.1 mouse_genomes_project 3 104974875 105024531 - MGP_CASTEiJ_P0062927 Cttnbp2nl protein_coding protein_coding MGP_CASTEiJ_T0062928.1 MGP_CASTEiJ_G0026873.1 mouse_genomes_project 3 104974905 105024502 - Cttnbp2nl protein_coding retained_intron MGP_CASTEiJ_T0063971.1 MGP_CASTEiJ_G0027085.1 mouse_genomes_project 3 140191869 140195278 + Adh4 protein_coding processed_transcript MGP_CASTEiJ_T0063972.1 MGP_CASTEiJ_G0027085.1 mouse_genomes_project 3 140191890 140204012 + MGP_CASTEiJ_P0063972 Adh4 protein_coding protein_coding MGP_CASTEiJ_T0063973.1 MGP_CASTEiJ_G0027085.1 mouse_genomes_project 3 140191898 140210856 + MGP_CASTEiJ_P0063973 Adh4 protein_coding protein_coding MGP_CASTEiJ_T0013624.1 MGP_CASTEiJ_G0011787.1 mouse_genomes_project 3 56503614 56503848 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060915.1 MGP_CASTEiJ_G0026414.1 mouse_genomes_project 3 57837508 57848820 - MGP_CASTEiJ_P0060915 P2ry12 protein_coding protein_coding MGP_CASTEiJ_T0060916.1 MGP_CASTEiJ_G0026414.1 mouse_genomes_project 3 57837595 57891383 - MGP_CASTEiJ_P0060916 P2ry12 protein_coding protein_coding MGP_CASTEiJ_T0060917.1 MGP_CASTEiJ_G0026414.1 mouse_genomes_project 3 57837596 57841496 - MGP_CASTEiJ_P0060917 P2ry12 protein_coding protein_coding MGP_CASTEiJ_T0060918.1 MGP_CASTEiJ_G0026414.1 mouse_genomes_project 3 57837597 57891423 - MGP_CASTEiJ_P0060918 P2ry12 protein_coding protein_coding MGP_CASTEiJ_T0060919.1 MGP_CASTEiJ_G0026414.1 mouse_genomes_project 3 57839141 57841437 - MGP_CASTEiJ_P0060919 P2ry12 protein_coding protein_coding MGP_CASTEiJ_T0061822.1 MGP_CASTEiJ_G0026597.1 mouse_genomes_project 3 89303433 89305239 - MGP_CASTEiJ_P0061822 Lenep protein_coding protein_coding MGP_CASTEiJ_T0017242.1 MGP_CASTEiJ_G0014834.1 mouse_genomes_project 3 108766379 108770816 - Gm12522 processed_transcript processed_transcript MGP_CASTEiJ_T0001200.1 MGP_CASTEiJ_G0001131.1 mouse_genomes_project 3 79429286 79431626 + TEC TEC MGP_CASTEiJ_T0100962.1 MGP_CASTEiJ_G0037875.1 mouse_genomes_project 3 66349875 66350007 - Gm25919 snoRNA snoRNA MGP_CASTEiJ_T0013484.1 MGP_CASTEiJ_G0011647.1 mouse_genomes_project 3 6984442 6988139 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062683.1 MGP_CASTEiJ_G0026823.1 mouse_genomes_project 3 99873312 99919314 + MGP_CASTEiJ_P0062683 Gdap2 protein_coding protein_coding MGP_CASTEiJ_T0062684.1 MGP_CASTEiJ_G0026823.1 mouse_genomes_project 3 99873449 99914810 + MGP_CASTEiJ_P0062684 Gdap2 protein_coding protein_coding MGP_CASTEiJ_T0062685.1 MGP_CASTEiJ_G0026823.1 mouse_genomes_project 3 99873475 99880830 + Gdap2 protein_coding processed_transcript MGP_CASTEiJ_T0062686.1 MGP_CASTEiJ_G0026823.1 mouse_genomes_project 3 99906918 99918988 + MGP_CASTEiJ_P0062686 Gdap2 protein_coding protein_coding MGP_CASTEiJ_T0062687.1 MGP_CASTEiJ_G0026823.1 mouse_genomes_project 3 99913026 99914810 + Gdap2 protein_coding retained_intron MGP_CASTEiJ_T0063023.1 MGP_CASTEiJ_G0026898.1 mouse_genomes_project 3 107404250 107410814 + MGP_CASTEiJ_P0063023 Kcna2 protein_coding protein_coding MGP_CASTEiJ_T0063024.1 MGP_CASTEiJ_G0026898.1 mouse_genomes_project 3 107404671 107418177 + MGP_CASTEiJ_P0063024 Kcna2 protein_coding protein_coding MGP_CASTEiJ_T0063025.1 MGP_CASTEiJ_G0026898.1 mouse_genomes_project 3 107405786 107409076 + MGP_CASTEiJ_P0063025 Kcna2 protein_coding protein_coding MGP_CASTEiJ_T0007393.1 MGP_CASTEiJ_G0006067.1 mouse_genomes_project 3 78839716 78844572 + 4930589L23Rik lincRNA lincRNA MGP_CASTEiJ_T0013512.1 MGP_CASTEiJ_G0011675.1 mouse_genomes_project 3 14503785 14505132 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004170.1 MGP_CASTEiJ_G0003669.1 mouse_genomes_project 3 95385054 95402599 + C920021L13Rik antisense antisense MGP_CASTEiJ_T0004171.1 MGP_CASTEiJ_G0003669.1 mouse_genomes_project 3 95385057 95403736 + C920021L13Rik antisense antisense MGP_CASTEiJ_T0063701.1 MGP_CASTEiJ_G0027034.1 mouse_genomes_project 3 131364406 131376914 + MGP_CASTEiJ_P0063701 Casp6 protein_coding protein_coding MGP_CASTEiJ_T0063702.1 MGP_CASTEiJ_G0027034.1 mouse_genomes_project 3 131364439 131371616 + Casp6 protein_coding processed_transcript MGP_CASTEiJ_T0063703.1 MGP_CASTEiJ_G0027034.1 mouse_genomes_project 3 131364482 131368403 + Casp6 protein_coding retained_intron MGP_CASTEiJ_T0063704.1 MGP_CASTEiJ_G0027034.1 mouse_genomes_project 3 131373281 131376414 + Casp6 protein_coding retained_intron MGP_CASTEiJ_T0060955.1 MGP_CASTEiJ_G0026423.1 mouse_genomes_project 3 59742503 59748686 + MGP_CASTEiJ_P0060955 P2ry1 protein_coding protein_coding MGP_CASTEiJ_T0060956.1 MGP_CASTEiJ_G0026423.1 mouse_genomes_project 3 59742503 59748689 + MGP_CASTEiJ_P0060956 P2ry1 protein_coding protein_coding MGP_CASTEiJ_T0060957.1 MGP_CASTEiJ_G0026423.1 mouse_genomes_project 3 59742507 59744708 + MGP_CASTEiJ_P0060957 P2ry1 protein_coding protein_coding MGP_CASTEiJ_T0063349.1 MGP_CASTEiJ_G0026974.1 mouse_genomes_project 3 117248912 117293551 - MGP_CASTEiJ_P0063349 Slc35a3 protein_coding protein_coding MGP_CASTEiJ_T0063350.1 MGP_CASTEiJ_G0026974.1 mouse_genomes_project 3 117253909 117293132 - MGP_CASTEiJ_P0063350 Slc35a3 protein_coding protein_coding MGP_CASTEiJ_T0063351.1 MGP_CASTEiJ_G0026974.1 mouse_genomes_project 3 117254425 117257122 - Slc35a3 protein_coding processed_transcript MGP_CASTEiJ_T0063352.1 MGP_CASTEiJ_G0026974.1 mouse_genomes_project 3 117262442 117292743 - MGP_CASTEiJ_P0063352 Slc35a3 protein_coding protein_coding MGP_CASTEiJ_T0063353.1 MGP_CASTEiJ_G0026974.1 mouse_genomes_project 3 117262577 117293113 - MGP_CASTEiJ_P0063353 Slc35a3 protein_coding protein_coding MGP_CASTEiJ_T0063354.1 MGP_CASTEiJ_G0026974.1 mouse_genomes_project 3 117272085 117293158 - Slc35a3 protein_coding retained_intron MGP_CASTEiJ_T0063355.1 MGP_CASTEiJ_G0026974.1 mouse_genomes_project 3 117275856 117293732 - MGP_CASTEiJ_P0063355 Slc35a3 protein_coding protein_coding MGP_CASTEiJ_T0060729.1 MGP_CASTEiJ_G0026374.1 mouse_genomes_project 3 51838991 51856966 + MGP_CASTEiJ_P0060729 Proser1 protein_coding protein_coding MGP_CASTEiJ_T0060730.1 MGP_CASTEiJ_G0026374.1 mouse_genomes_project 3 51839132 51840070 + Proser1 protein_coding retained_intron MGP_CASTEiJ_T0060731.1 MGP_CASTEiJ_G0026374.1 mouse_genomes_project 3 51839256 51849454 + Proser1 protein_coding retained_intron MGP_CASTEiJ_T0060732.1 MGP_CASTEiJ_G0026374.1 mouse_genomes_project 3 51853334 51855132 + Proser1 protein_coding retained_intron MGP_CASTEiJ_T0007383.1 MGP_CASTEiJ_G0006060.1 mouse_genomes_project 3 72308609 72442930 + Gm38353 lincRNA lincRNA MGP_CASTEiJ_T0013800.1 MGP_CASTEiJ_G0011963.1 mouse_genomes_project 3 111845690 111847229 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063456.1 MGP_CASTEiJ_G0026993.1 mouse_genomes_project 3 122966216 123121217 + MGP_CASTEiJ_P0063456 Abca4 protein_coding protein_coding MGP_CASTEiJ_T0063457.1 MGP_CASTEiJ_G0026993.1 mouse_genomes_project 3 122968314 123025966 + Abca4 protein_coding processed_transcript MGP_CASTEiJ_T0063458.1 MGP_CASTEiJ_G0026993.1 mouse_genomes_project 3 122997767 123015484 + Abca4 protein_coding processed_transcript MGP_CASTEiJ_T0063459.1 MGP_CASTEiJ_G0026993.1 mouse_genomes_project 3 123051444 123061184 + Abca4 protein_coding retained_intron MGP_CASTEiJ_T0063460.1 MGP_CASTEiJ_G0026993.1 mouse_genomes_project 3 123053158 123059013 + Abca4 protein_coding retained_intron MGP_CASTEiJ_T0063461.1 MGP_CASTEiJ_G0026993.1 mouse_genomes_project 3 123064589 123121219 + MGP_CASTEiJ_P0063461 Abca4 protein_coding protein_coding MGP_CASTEiJ_T0063462.1 MGP_CASTEiJ_G0026993.1 mouse_genomes_project 3 123103505 123105700 + Abca4 protein_coding retained_intron MGP_CASTEiJ_T0063463.1 MGP_CASTEiJ_G0026993.1 mouse_genomes_project 3 123105198 123111369 + Abca4 protein_coding retained_intron MGP_CASTEiJ_T0063464.1 MGP_CASTEiJ_G0026993.1 mouse_genomes_project 3 123110982 123112036 + Abca4 protein_coding processed_transcript MGP_CASTEiJ_T0063465.1 MGP_CASTEiJ_G0026993.1 mouse_genomes_project 3 123114170 123121281 + Abca4 protein_coding retained_intron MGP_CASTEiJ_T0001220.1 MGP_CASTEiJ_G0001151.1 mouse_genomes_project 3 96856356 96860208 + TEC TEC MGP_CASTEiJ_T0007374.1 MGP_CASTEiJ_G0006052.1 mouse_genomes_project 3 62222657 62225424 - lincRNA lincRNA MGP_CASTEiJ_T0007288.1 MGP_CASTEiJ_G0005985.1 mouse_genomes_project 3 17119630 17120710 + 4632415L05Rik lincRNA lincRNA MGP_CASTEiJ_T0007289.1 MGP_CASTEiJ_G0005985.1 mouse_genomes_project 3 17119642 17124892 + 4632415L05Rik lincRNA lincRNA MGP_CASTEiJ_T0013587.1 MGP_CASTEiJ_G0011750.1 mouse_genomes_project 3 41810091 41810443 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001352.1 MGP_CASTEiJ_G0001282.1 mouse_genomes_project 3 162757713 162760116 + TEC TEC MGP_CASTEiJ_T0007293.1 MGP_CASTEiJ_G0005989.1 mouse_genomes_project 3 19299975 19301709 - Gm43672 lincRNA lincRNA MGP_CASTEiJ_T0013591.1 MGP_CASTEiJ_G0011754.1 mouse_genomes_project 3 43622465 43622826 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001104.1 MGP_CASTEiJ_G0001037.1 mouse_genomes_project 3 34953228 34953702 + TEC TEC MGP_CASTEiJ_T0007590.1 MGP_CASTEiJ_G0006222.1 mouse_genomes_project 3 155875065 155895383 - Gm43832 lincRNA lincRNA MGP_CASTEiJ_T0007591.1 MGP_CASTEiJ_G0006222.1 mouse_genomes_project 3 155878935 155887954 - Gm43832 lincRNA lincRNA MGP_CASTEiJ_T0064352.1 MGP_CASTEiJ_G0027150.1 mouse_genomes_project 3 155916424 156477213 - MGP_CASTEiJ_P0064352 St6galnac3 protein_coding protein_coding MGP_CASTEiJ_T0064353.1 MGP_CASTEiJ_G0027150.1 mouse_genomes_project 3 155923541 155942795 - MGP_CASTEiJ_P0064353 St6galnac3 protein_coding protein_coding MGP_CASTEiJ_T0064354.1 MGP_CASTEiJ_G0027150.1 mouse_genomes_project 3 155924789 156477152 - MGP_CASTEiJ_P0064354 St6galnac3 protein_coding protein_coding MGP_CASTEiJ_T0064355.1 MGP_CASTEiJ_G0027150.1 mouse_genomes_project 3 156239991 156240858 - St6galnac3 protein_coding retained_intron MGP_CASTEiJ_T0064356.1 MGP_CASTEiJ_G0027150.1 mouse_genomes_project 3 156240246 156473964 - St6galnac3 protein_coding retained_intron MGP_CASTEiJ_T0017225.1 MGP_CASTEiJ_G0014826.1 mouse_genomes_project 3 94455383 94456835 + 4930481B07Rik processed_transcript lincRNA MGP_CASTEiJ_T0017226.1 MGP_CASTEiJ_G0014826.1 mouse_genomes_project 3 94456007 94459885 + 4930481B07Rik processed_transcript processed_transcript MGP_CASTEiJ_T0013715.1 MGP_CASTEiJ_G0011878.1 mouse_genomes_project 3 86716830 86717359 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004222.1 MGP_CASTEiJ_G0003698.1 mouse_genomes_project 3 116667881 116682037 + Gm43109 antisense antisense MGP_CASTEiJ_T0013656.1 MGP_CASTEiJ_G0011819.1 mouse_genomes_project 3 64905294 64905553 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001136.1 MGP_CASTEiJ_G0001069.1 mouse_genomes_project 3 49515709 49517328 + TEC TEC MGP_CASTEiJ_T0010239.1 MGP_CASTEiJ_G0008427.1 mouse_genomes_project 3 88216111 88216184 - Mir7011 miRNA miRNA MGP_CASTEiJ_T0001127.1 MGP_CASTEiJ_G0001060.1 mouse_genomes_project 3 47348212 47349278 + TEC TEC MGP_CASTEiJ_T0007379.1 MGP_CASTEiJ_G0006057.1 mouse_genomes_project 3 67934362 67959572 + Gm1647 lincRNA lincRNA MGP_CASTEiJ_T0060686.1 MGP_CASTEiJ_G0026365.1 mouse_genomes_project 3 49678853 49744094 + Naa15 protein_coding processed_transcript MGP_CASTEiJ_T0060687.1 MGP_CASTEiJ_G0026365.1 mouse_genomes_project 3 49678880 49749884 + MGP_CASTEiJ_P0060687 Naa15 protein_coding protein_coding MGP_CASTEiJ_T0060688.1 MGP_CASTEiJ_G0026365.1 mouse_genomes_project 3 49679171 49712664 + MGP_CASTEiJ_P0060688 Naa15 protein_coding protein_coding MGP_CASTEiJ_T0060689.1 MGP_CASTEiJ_G0026365.1 mouse_genomes_project 3 49710207 49713692 + Naa15 protein_coding retained_intron MGP_CASTEiJ_T0060690.1 MGP_CASTEiJ_G0026365.1 mouse_genomes_project 3 49711193 49718327 + MGP_CASTEiJ_P0060690 Naa15 protein_coding protein_coding MGP_CASTEiJ_T0060691.1 MGP_CASTEiJ_G0026365.1 mouse_genomes_project 3 49729718 49733281 + Naa15 protein_coding retained_intron MGP_CASTEiJ_T0060692.1 MGP_CASTEiJ_G0026365.1 mouse_genomes_project 3 49730698 49733017 + Naa15 protein_coding retained_intron MGP_CASTEiJ_T0060693.1 MGP_CASTEiJ_G0026365.1 mouse_genomes_project 3 49741712 49744745 + Naa15 protein_coding retained_intron MGP_CASTEiJ_T0007595.1 MGP_CASTEiJ_G0006226.1 mouse_genomes_project 3 159429089 159445173 - 4930570G19Rik lincRNA lincRNA MGP_CASTEiJ_T0007596.1 MGP_CASTEiJ_G0006226.1 mouse_genomes_project 3 159429097 159445068 - 4930570G19Rik lincRNA lincRNA MGP_CASTEiJ_T0007597.1 MGP_CASTEiJ_G0006226.1 mouse_genomes_project 3 159430757 159445161 - 4930570G19Rik lincRNA lincRNA MGP_CASTEiJ_T0007598.1 MGP_CASTEiJ_G0006226.1 mouse_genomes_project 3 159443386 159445232 - 4930570G19Rik lincRNA lincRNA MGP_CASTEiJ_T0004215.1 MGP_CASTEiJ_G0003692.1 mouse_genomes_project 3 108450406 108452835 + Gm12500 antisense antisense MGP_CASTEiJ_T0004216.1 MGP_CASTEiJ_G0003692.1 mouse_genomes_project 3 108450798 108452833 + Gm12500 antisense antisense MGP_CASTEiJ_T0101596.1 MGP_CASTEiJ_G0038459.1 mouse_genomes_project 3 128677442 128678437 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0001140.1 MGP_CASTEiJ_G0001073.1 mouse_genomes_project 3 49831334 49833446 - TEC TEC MGP_CASTEiJ_T0060622.1 MGP_CASTEiJ_G0026355.1 mouse_genomes_project 3 39410648 39528558 - MGP_CASTEiJ_P0060622 protein_coding protein_coding MGP_CASTEiJ_T0060623.1 MGP_CASTEiJ_G0026355.1 mouse_genomes_project 3 39410884 39528525 - MGP_CASTEiJ_P0060623 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060624.1 MGP_CASTEiJ_G0026355.1 mouse_genomes_project 3 39410884 39528071 - MGP_CASTEiJ_P0060624 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060625.1 MGP_CASTEiJ_G0026355.1 mouse_genomes_project 3 39411048 39413879 - protein_coding retained_intron MGP_CASTEiJ_T0060626.1 MGP_CASTEiJ_G0026355.1 mouse_genomes_project 3 39413139 39458994 - protein_coding retained_intron MGP_CASTEiJ_T0060627.1 MGP_CASTEiJ_G0026355.1 mouse_genomes_project 3 39442154 39448908 - MGP_CASTEiJ_P0060627 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060628.1 MGP_CASTEiJ_G0026355.1 mouse_genomes_project 3 39459502 39496960 - protein_coding retained_intron MGP_CASTEiJ_T0060629.1 MGP_CASTEiJ_G0026355.1 mouse_genomes_project 3 39527553 39528449 - protein_coding retained_intron MGP_CASTEiJ_T0098886.1 MGP_CASTEiJ_G0035810.1 mouse_genomes_project 3 98897526 98900967 + Gm42717 sense_intronic sense_intronic MGP_CASTEiJ_T0099741.1 MGP_CASTEiJ_G0036654.1 mouse_genomes_project 3 104655847 104655937 + Gm24223 snRNA snRNA MGP_CASTEiJ_T0009215.1 MGP_CASTEiJ_G0007403.1 mouse_genomes_project 3 147202317 147214588 + Gm43742 macro_lncRNA macro_lncRNA MGP_CASTEiJ_T0013557.1 MGP_CASTEiJ_G0011720.1 mouse_genomes_project 3 33503153 33504144 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063030.1 MGP_CASTEiJ_G0026902.1 mouse_genomes_project 3 107552163 107557297 - MGP_CASTEiJ_P0063030 Prok1 protein_coding protein_coding MGP_CASTEiJ_T0063031.1 MGP_CASTEiJ_G0026902.1 mouse_genomes_project 3 107553798 107558359 - MGP_CASTEiJ_P0063031 Prok1 protein_coding protein_coding MGP_CASTEiJ_T0060157.1 MGP_CASTEiJ_G0026275.1 mouse_genomes_project 3 23933014 24284929 + MGP_CASTEiJ_P0060157 Spata16 protein_coding protein_coding MGP_CASTEiJ_T0060158.1 MGP_CASTEiJ_G0026275.1 mouse_genomes_project 3 23933044 24232930 + MGP_CASTEiJ_P0060158 Spata16 protein_coding protein_coding MGP_CASTEiJ_T0013630.1 MGP_CASTEiJ_G0011793.1 mouse_genomes_project 3 57263945 57264874 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064390.1 MGP_CASTEiJ_G0027155.1 mouse_genomes_project 3 156747601 157077283 + MGP_CASTEiJ_P0064390 Slc44a5 protein_coding protein_coding MGP_CASTEiJ_T0064391.1 MGP_CASTEiJ_G0027155.1 mouse_genomes_project 3 156954125 157074602 + MGP_CASTEiJ_P0064391 Slc44a5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064392.1 MGP_CASTEiJ_G0027155.1 mouse_genomes_project 3 157023251 157026295 + Slc44a5 protein_coding processed_transcript MGP_CASTEiJ_T0064393.1 MGP_CASTEiJ_G0027155.1 mouse_genomes_project 3 157063163 157077283 + Slc44a5 protein_coding retained_intron MGP_CASTEiJ_T0062775.1 MGP_CASTEiJ_G0026846.1 mouse_genomes_project 3 102874827 102889411 + Csde1 protein_coding retained_intron MGP_CASTEiJ_T0062776.1 MGP_CASTEiJ_G0026846.1 mouse_genomes_project 3 102874849 102876662 + Csde1 protein_coding retained_intron MGP_CASTEiJ_T0062777.1 MGP_CASTEiJ_G0026846.1 mouse_genomes_project 3 102875931 102890546 + Csde1 protein_coding processed_transcript MGP_CASTEiJ_T0062778.1 MGP_CASTEiJ_G0026846.1 mouse_genomes_project 3 102885324 102908335 + MGP_CASTEiJ_P0062778 Csde1 protein_coding protein_coding MGP_CASTEiJ_T0062779.1 MGP_CASTEiJ_G0026846.1 mouse_genomes_project 3 102886376 102891298 + Csde1 protein_coding processed_transcript MGP_CASTEiJ_T0062780.1 MGP_CASTEiJ_G0026846.1 mouse_genomes_project 3 102886635 102890725 + Csde1 protein_coding retained_intron MGP_CASTEiJ_T0062781.1 MGP_CASTEiJ_G0026846.1 mouse_genomes_project 3 102886664 102893249 + MGP_CASTEiJ_P0062781 Csde1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062782.1 MGP_CASTEiJ_G0026846.1 mouse_genomes_project 3 102889854 102909857 + MGP_CASTEiJ_P0062782 Csde1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062783.1 MGP_CASTEiJ_G0026846.1 mouse_genomes_project 3 102890202 102890900 + Csde1 protein_coding retained_intron MGP_CASTEiJ_T0062784.1 MGP_CASTEiJ_G0026846.1 mouse_genomes_project 3 102896449 102902436 + Csde1 protein_coding retained_intron MGP_CASTEiJ_T0062785.1 MGP_CASTEiJ_G0026846.1 mouse_genomes_project 3 102907423 102908509 + Csde1 protein_coding retained_intron MGP_CASTEiJ_T0062677.1 MGP_CASTEiJ_G0026822.1 mouse_genomes_project 3 99847361 99873339 - MGP_CASTEiJ_P0062677 Wdr3 protein_coding protein_coding MGP_CASTEiJ_T0062678.1 MGP_CASTEiJ_G0026822.1 mouse_genomes_project 3 99847916 99850794 - Wdr3 protein_coding retained_intron MGP_CASTEiJ_T0062679.1 MGP_CASTEiJ_G0026822.1 mouse_genomes_project 3 99851671 99873339 - Wdr3 protein_coding retained_intron MGP_CASTEiJ_T0062680.1 MGP_CASTEiJ_G0026822.1 mouse_genomes_project 3 99851673 99852755 - Wdr3 protein_coding retained_intron MGP_CASTEiJ_T0062681.1 MGP_CASTEiJ_G0026822.1 mouse_genomes_project 3 99866529 99873329 - MGP_CASTEiJ_P0062681 Wdr3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062682.1 MGP_CASTEiJ_G0026822.1 mouse_genomes_project 3 99866529 99873264 - MGP_CASTEiJ_P0062682 Wdr3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001270.1 MGP_CASTEiJ_G0001201.1 mouse_genomes_project 3 127791830 127793571 + TEC TEC MGP_CASTEiJ_T0013528.1 MGP_CASTEiJ_G0011691.1 mouse_genomes_project 3 18052281 18053878 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062602.1 MGP_CASTEiJ_G0026800.1 mouse_genomes_project 3 97201014 97251228 - MGP_CASTEiJ_P0062602 Chd1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0062603.1 MGP_CASTEiJ_G0026800.1 mouse_genomes_project 3 97201014 97251197 - MGP_CASTEiJ_P0062603 Chd1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0062604.1 MGP_CASTEiJ_G0026800.1 mouse_genomes_project 3 97201024 97251229 - MGP_CASTEiJ_P0062604 Chd1l protein_coding protein_coding MGP_CASTEiJ_T0062605.1 MGP_CASTEiJ_G0026800.1 mouse_genomes_project 3 97203079 97207228 - Chd1l protein_coding retained_intron MGP_CASTEiJ_T0062606.1 MGP_CASTEiJ_G0026800.1 mouse_genomes_project 3 97211178 97251218 - Chd1l protein_coding retained_intron MGP_CASTEiJ_T0099696.1 MGP_CASTEiJ_G0036609.1 mouse_genomes_project 3 54054537 54054644 + Gm25404 snRNA snRNA MGP_CASTEiJ_T0007568.1 MGP_CASTEiJ_G0006208.1 mouse_genomes_project 3 149448654 149477558 + Gm29771 lincRNA lincRNA MGP_CASTEiJ_T0007481.1 MGP_CASTEiJ_G0006135.1 mouse_genomes_project 3 117061601 117066141 + Gm26530 lincRNA lincRNA MGP_CASTEiJ_T0001245.1 MGP_CASTEiJ_G0001176.1 mouse_genomes_project 3 119629721 119632065 + TEC TEC MGP_CASTEiJ_T0099704.1 MGP_CASTEiJ_G0036617.1 mouse_genomes_project 3 64556633 64556740 - Gm25755 snRNA snRNA MGP_CASTEiJ_T0064200.1 MGP_CASTEiJ_G0027132.1 mouse_genomes_project 3 148998841 149041782 - MGP_CASTEiJ_P0064200 Samd13 protein_coding protein_coding MGP_CASTEiJ_T0064201.1 MGP_CASTEiJ_G0027132.1 mouse_genomes_project 3 148999753 149038637 - MGP_CASTEiJ_P0064201 Samd13 protein_coding protein_coding MGP_CASTEiJ_T0064202.1 MGP_CASTEiJ_G0027132.1 mouse_genomes_project 3 148999763 149038749 - MGP_CASTEiJ_P0064202 Samd13 protein_coding protein_coding MGP_CASTEiJ_T0064203.1 MGP_CASTEiJ_G0027132.1 mouse_genomes_project 3 148999848 149041665 - MGP_CASTEiJ_P0064203 Samd13 protein_coding protein_coding MGP_CASTEiJ_T0064206.1 MGP_CASTEiJ_G0027132.1 mouse_genomes_project 3 149036700 149041661 - Samd13 protein_coding retained_intron MGP_CASTEiJ_T0001318.1 MGP_CASTEiJ_G0001248.1 mouse_genomes_project 3 145762959 145768997 + TEC TEC MGP_CASTEiJ_T0063412.1 MGP_CASTEiJ_G0026985.1 mouse_genomes_project 3 122058577 122143227 - MGP_CASTEiJ_P0063412 Tmem56 protein_coding protein_coding MGP_CASTEiJ_T0063413.1 MGP_CASTEiJ_G0026985.1 mouse_genomes_project 3 122058824 122122185 - MGP_CASTEiJ_P0063413 Tmem56 protein_coding protein_coding MGP_CASTEiJ_T0063414.1 MGP_CASTEiJ_G0026985.1 mouse_genomes_project 3 122058824 122122159 - MGP_CASTEiJ_P0063414 Tmem56 protein_coding protein_coding MGP_CASTEiJ_T0063415.1 MGP_CASTEiJ_G0026985.1 mouse_genomes_project 3 122062865 122112006 - MGP_CASTEiJ_P0063415 Tmem56 protein_coding protein_coding MGP_CASTEiJ_T0063416.1 MGP_CASTEiJ_G0026985.1 mouse_genomes_project 3 122086077 122143227 - MGP_CASTEiJ_P0063416 Tmem56 protein_coding protein_coding MGP_CASTEiJ_T0063417.1 MGP_CASTEiJ_G0026985.1 mouse_genomes_project 3 122086121 122089279 - Tmem56 protein_coding retained_intron MGP_CASTEiJ_T0063418.1 MGP_CASTEiJ_G0026985.1 mouse_genomes_project 3 122093312 122143124 - Tmem56 protein_coding processed_transcript MGP_CASTEiJ_T0063419.1 MGP_CASTEiJ_G0026985.1 mouse_genomes_project 3 122093365 122143131 - Tmem56 protein_coding processed_transcript MGP_CASTEiJ_T0007451.1 MGP_CASTEiJ_G0006111.1 mouse_genomes_project 3 101480297 101491505 + Gm43135 lincRNA lincRNA MGP_CASTEiJ_T0013667.1 MGP_CASTEiJ_G0011830.1 mouse_genomes_project 3 68501085 68501480 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007505.1 MGP_CASTEiJ_G0006152.1 mouse_genomes_project 3 129234029 129236712 + Gm43053 lincRNA lincRNA MGP_CASTEiJ_T0013639.1 MGP_CASTEiJ_G0011802.1 mouse_genomes_project 3 59503092 59503661 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007331.1 MGP_CASTEiJ_G0006023.1 mouse_genomes_project 3 38320419 38338442 - 1700017G19Rik lincRNA lincRNA MGP_CASTEiJ_T0007332.1 MGP_CASTEiJ_G0006023.1 mouse_genomes_project 3 38324004 38325346 - 1700017G19Rik lincRNA lincRNA MGP_CASTEiJ_T0060995.1 MGP_CASTEiJ_G0026431.1 mouse_genomes_project 3 62664623 62680590 - MGP_CASTEiJ_P0060995 E130311K13Rik protein_coding protein_coding MGP_CASTEiJ_T0060996.1 MGP_CASTEiJ_G0026431.1 mouse_genomes_project 3 62675113 62680509 - E130311K13Rik protein_coding processed_transcript MGP_CASTEiJ_T0060997.1 MGP_CASTEiJ_G0026431.1 mouse_genomes_project 3 62677894 62680509 - E130311K13Rik protein_coding retained_intron MGP_CASTEiJ_T0060159.1 MGP_CASTEiJ_G0026276.1 mouse_genomes_project 3 24400771 24459649 - MGP_CASTEiJ_P0060159 Ect2 protein_coding protein_coding MGP_CASTEiJ_T0060160.1 MGP_CASTEiJ_G0026276.1 mouse_genomes_project 3 24400771 24459632 - MGP_CASTEiJ_P0060160 Ect2 protein_coding protein_coding MGP_CASTEiJ_T0060161.1 MGP_CASTEiJ_G0026276.1 mouse_genomes_project 3 24400772 24459625 - MGP_CASTEiJ_P0060161 Ect2 protein_coding protein_coding MGP_CASTEiJ_T0060162.1 MGP_CASTEiJ_G0026276.1 mouse_genomes_project 3 24400775 24459621 - MGP_CASTEiJ_P0060162 Ect2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060163.1 MGP_CASTEiJ_G0026276.1 mouse_genomes_project 3 24401855 24421507 - MGP_CASTEiJ_P0060163 Ect2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060164.1 MGP_CASTEiJ_G0026276.1 mouse_genomes_project 3 24419996 24462069 - MGP_CASTEiJ_P0060164 Ect2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0060165.1 MGP_CASTEiJ_G0026276.1 mouse_genomes_project 3 24421551 24426991 - Ect2 protein_coding retained_intron MGP_CASTEiJ_T0060166.1 MGP_CASTEiJ_G0026276.1 mouse_genomes_project 3 24426176 24459583 - Ect2 protein_coding retained_intron MGP_CASTEiJ_T0060167.1 MGP_CASTEiJ_G0026276.1 mouse_genomes_project 3 24435709 24442098 - Ect2 protein_coding retained_intron MGP_CASTEiJ_T0060168.1 MGP_CASTEiJ_G0026276.1 mouse_genomes_project 3 24449734 24451986 - Ect2 protein_coding retained_intron MGP_CASTEiJ_T0060169.1 MGP_CASTEiJ_G0026276.1 mouse_genomes_project 3 24449804 24459625 - MGP_CASTEiJ_P0060169 Ect2 protein_coding protein_coding MGP_CASTEiJ_T0060170.1 MGP_CASTEiJ_G0026276.1 mouse_genomes_project 3 24450752 24459599 - MGP_CASTEiJ_P0060170 Ect2 protein_coding protein_coding MGP_CASTEiJ_T0060171.1 MGP_CASTEiJ_G0026276.1 mouse_genomes_project 3 24450768 24459581 - MGP_CASTEiJ_P0060171 Ect2 protein_coding protein_coding MGP_CASTEiJ_T0060172.1 MGP_CASTEiJ_G0026276.1 mouse_genomes_project 3 24450812 24459553 - MGP_CASTEiJ_P0060172 Ect2 protein_coding protein_coding MGP_CASTEiJ_T0001063.1 MGP_CASTEiJ_G0000996.1 mouse_genomes_project 3 6819456 6823216 + TEC TEC MGP_CASTEiJ_T0063892.1 MGP_CASTEiJ_G0027066.1 mouse_genomes_project 3 137478944 137561109 + MGP_CASTEiJ_P0063892 Slc39a8 protein_coding protein_coding MGP_CASTEiJ_T0063893.1 MGP_CASTEiJ_G0027066.1 mouse_genomes_project 3 137479319 137519932 + Slc39a8 protein_coding retained_intron MGP_CASTEiJ_T0063894.1 MGP_CASTEiJ_G0027066.1 mouse_genomes_project 3 137479322 137561287 + MGP_CASTEiJ_P0063894 Slc39a8 protein_coding protein_coding MGP_CASTEiJ_T0063895.1 MGP_CASTEiJ_G0027066.1 mouse_genomes_project 3 137479441 137561287 + MGP_CASTEiJ_P0063895 Slc39a8 protein_coding protein_coding MGP_CASTEiJ_T0063896.1 MGP_CASTEiJ_G0027066.1 mouse_genomes_project 3 137479742 137561101 + MGP_CASTEiJ_P0063896 Slc39a8 protein_coding protein_coding MGP_CASTEiJ_T0063897.1 MGP_CASTEiJ_G0027066.1 mouse_genomes_project 3 137553799 137561283 + Slc39a8 protein_coding retained_intron MGP_CASTEiJ_T0013625.1 MGP_CASTEiJ_G0011788.1 mouse_genomes_project 3 56524622 56525800 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060982.1 MGP_CASTEiJ_G0026430.1 mouse_genomes_project 3 62433741 62594394 - MGP_CASTEiJ_P0060982 Plch1 protein_coding protein_coding MGP_CASTEiJ_T0060983.1 MGP_CASTEiJ_G0026430.1 mouse_genomes_project 3 62433741 62594346 - MGP_CASTEiJ_P0060983 Plch1 protein_coding protein_coding MGP_CASTEiJ_T0060984.1 MGP_CASTEiJ_G0026430.1 mouse_genomes_project 3 62433744 62439862 - Plch1 protein_coding retained_intron MGP_CASTEiJ_T0060985.1 MGP_CASTEiJ_G0026430.1 mouse_genomes_project 3 62433744 62479566 - Plch1 protein_coding retained_intron MGP_CASTEiJ_T0060986.1 MGP_CASTEiJ_G0026430.1 mouse_genomes_project 3 62433744 62594612 - MGP_CASTEiJ_P0060986 Plch1 protein_coding protein_coding MGP_CASTEiJ_T0060987.1 MGP_CASTEiJ_G0026430.1 mouse_genomes_project 3 62433744 62594638 - MGP_CASTEiJ_P0060987 Plch1 protein_coding protein_coding MGP_CASTEiJ_T0060988.1 MGP_CASTEiJ_G0026430.1 mouse_genomes_project 3 62433744 62594346 - MGP_CASTEiJ_P0060988 Plch1 protein_coding protein_coding MGP_CASTEiJ_T0060989.1 MGP_CASTEiJ_G0026430.1 mouse_genomes_project 3 62433745 62594346 - MGP_CASTEiJ_P0060989 Plch1 protein_coding protein_coding MGP_CASTEiJ_T0060990.1 MGP_CASTEiJ_G0026430.1 mouse_genomes_project 3 62434239 62646908 - MGP_CASTEiJ_P0060990 Plch1 protein_coding protein_coding MGP_CASTEiJ_T0060991.1 MGP_CASTEiJ_G0026430.1 mouse_genomes_project 3 62436441 62439551 - MGP_CASTEiJ_P0060991 Plch1 protein_coding protein_coding MGP_CASTEiJ_T0060992.1 MGP_CASTEiJ_G0026430.1 mouse_genomes_project 3 62439323 62594714 - MGP_CASTEiJ_P0060992 Plch1 protein_coding protein_coding MGP_CASTEiJ_T0060993.1 MGP_CASTEiJ_G0026430.1 mouse_genomes_project 3 62520658 62646878 - MGP_CASTEiJ_P0060993 Plch1 protein_coding protein_coding MGP_CASTEiJ_T0060994.1 MGP_CASTEiJ_G0026430.1 mouse_genomes_project 3 62615341 62646809 - MGP_CASTEiJ_P0060994 Plch1 protein_coding protein_coding MGP_CASTEiJ_T0004141.1 MGP_CASTEiJ_G0003648.1 mouse_genomes_project 3 84888469 84901395 + 1700036G14Rik antisense antisense MGP_CASTEiJ_T0061507.1 MGP_CASTEiJ_G0026550.1 mouse_genomes_project 3 88039990 88070631 + MGP_CASTEiJ_P0061507 Cct3 protein_coding protein_coding MGP_CASTEiJ_T0061508.1 MGP_CASTEiJ_G0026550.1 mouse_genomes_project 3 88039991 88041819 + Cct3 protein_coding retained_intron MGP_CASTEiJ_T0061509.1 MGP_CASTEiJ_G0026550.1 mouse_genomes_project 3 88039997 88070371 + Cct3 protein_coding retained_intron MGP_CASTEiJ_T0061510.1 MGP_CASTEiJ_G0026550.1 mouse_genomes_project 3 88040000 88057053 + Cct3 protein_coding retained_intron MGP_CASTEiJ_T0061511.1 MGP_CASTEiJ_G0026550.1 mouse_genomes_project 3 88040027 88070371 + Cct3 protein_coding retained_intron MGP_CASTEiJ_T0061512.1 MGP_CASTEiJ_G0026550.1 mouse_genomes_project 3 88040048 88070630 + MGP_CASTEiJ_P0061512 Cct3 protein_coding protein_coding MGP_CASTEiJ_T0061513.1 MGP_CASTEiJ_G0026550.1 mouse_genomes_project 3 88040062 88070371 + MGP_CASTEiJ_P0061513 Cct3 protein_coding protein_coding MGP_CASTEiJ_T0061514.1 MGP_CASTEiJ_G0026550.1 mouse_genomes_project 3 88045610 88069509 + MGP_CASTEiJ_P0061514 Cct3 protein_coding protein_coding MGP_CASTEiJ_T0061515.1 MGP_CASTEiJ_G0026550.1 mouse_genomes_project 3 88069853 88070628 + Cct3 protein_coding retained_intron MGP_CASTEiJ_T0061516.1 MGP_CASTEiJ_G0026550.1 mouse_genomes_project 3 88069906 88070629 + MGP_CASTEiJ_P0061516 Cct3 protein_coding protein_coding MGP_CASTEiJ_T0001192.1 MGP_CASTEiJ_G0001123.1 mouse_genomes_project 3 74689104 74693591 + TEC TEC MGP_CASTEiJ_T0064165.1 MGP_CASTEiJ_G0027124.1 mouse_genomes_project 3 148736383 148772259 + MGP_CASTEiJ_P0064165 Ssx2ip protein_coding protein_coding MGP_CASTEiJ_T0064166.1 MGP_CASTEiJ_G0027124.1 mouse_genomes_project 3 148736383 148771889 + MGP_CASTEiJ_P0064166 Ssx2ip protein_coding protein_coding MGP_CASTEiJ_T0064167.1 MGP_CASTEiJ_G0027124.1 mouse_genomes_project 3 148736405 148772248 + MGP_CASTEiJ_P0064167 Ssx2ip protein_coding protein_coding MGP_CASTEiJ_T0064168.1 MGP_CASTEiJ_G0027124.1 mouse_genomes_project 3 148736427 148771018 + MGP_CASTEiJ_P0064168 Ssx2ip protein_coding protein_coding MGP_CASTEiJ_T0064169.1 MGP_CASTEiJ_G0027124.1 mouse_genomes_project 3 148736432 148750089 + MGP_CASTEiJ_P0064169 Ssx2ip protein_coding protein_coding MGP_CASTEiJ_T0064170.1 MGP_CASTEiJ_G0027124.1 mouse_genomes_project 3 148736718 148751050 + MGP_CASTEiJ_P0064170 Ssx2ip protein_coding protein_coding MGP_CASTEiJ_T0064171.1 MGP_CASTEiJ_G0027124.1 mouse_genomes_project 3 148762661 148764728 + Ssx2ip protein_coding retained_intron MGP_CASTEiJ_T0061136.1 MGP_CASTEiJ_G0026464.1 mouse_genomes_project 3 71881802 71960111 - MGP_CASTEiJ_P0061136 Sis protein_coding protein_coding MGP_CASTEiJ_T0061137.1 MGP_CASTEiJ_G0026464.1 mouse_genomes_project 3 71881805 71957550 - MGP_CASTEiJ_P0061137 Sis protein_coding protein_coding MGP_CASTEiJ_T0061138.1 MGP_CASTEiJ_G0026464.1 mouse_genomes_project 3 71939366 71940507 - Sis protein_coding retained_intron MGP_CASTEiJ_T0061139.1 MGP_CASTEiJ_G0026464.1 mouse_genomes_project 3 71955695 71960108 - Sis protein_coding retained_intron MGP_CASTEiJ_T0063304.1 MGP_CASTEiJ_G0026965.1 mouse_genomes_project 3 116801682 116805562 - MGP_CASTEiJ_P0063304 Gpr88 protein_coding protein_coding MGP_CASTEiJ_T0063305.1 MGP_CASTEiJ_G0026965.1 mouse_genomes_project 3 116804597 116805148 - MGP_CASTEiJ_P0063305 Gpr88 protein_coding protein_coding MGP_CASTEiJ_T0063306.1 MGP_CASTEiJ_G0026965.1 mouse_genomes_project 3 116804710 116805522 - Gpr88 protein_coding processed_transcript MGP_CASTEiJ_T0010213.1 MGP_CASTEiJ_G0008401.1 mouse_genomes_project 3 17450081 17450151 - Mir7007 miRNA miRNA MGP_CASTEiJ_T0060701.1 MGP_CASTEiJ_G0026368.1 mouse_genomes_project 3 49938350 49958537 + Mgst2 protein_coding processed_transcript MGP_CASTEiJ_T0060702.1 MGP_CASTEiJ_G0026368.1 mouse_genomes_project 3 49939166 49955410 + Mgst2 protein_coding processed_transcript MGP_CASTEiJ_T0060703.1 MGP_CASTEiJ_G0026368.1 mouse_genomes_project 3 49939202 49959406 + MGP_CASTEiJ_P0060703 Mgst2 protein_coding protein_coding MGP_CASTEiJ_T0060704.1 MGP_CASTEiJ_G0026368.1 mouse_genomes_project 3 49939237 49959413 + MGP_CASTEiJ_P0060704 Mgst2 protein_coding protein_coding MGP_CASTEiJ_T0060705.1 MGP_CASTEiJ_G0026368.1 mouse_genomes_project 3 49949401 49959402 + Mgst2 protein_coding processed_transcript MGP_CASTEiJ_T0060706.1 MGP_CASTEiJ_G0026368.1 mouse_genomes_project 3 49949853 49959249 + Mgst2 protein_coding processed_transcript MGP_CASTEiJ_T0060707.1 MGP_CASTEiJ_G0026368.1 mouse_genomes_project 3 49953157 49959405 + Mgst2 protein_coding retained_intron MGP_CASTEiJ_T0060708.1 MGP_CASTEiJ_G0026368.1 mouse_genomes_project 3 49958351 49959408 + Mgst2 protein_coding retained_intron MGP_CASTEiJ_T0013900.1 MGP_CASTEiJ_G0012063.1 mouse_genomes_project 3 144750497 144751560 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099682.1 MGP_CASTEiJ_G0036595.1 mouse_genomes_project 3 15396608 15396772 - Gm23686 snRNA snRNA MGP_CASTEiJ_T0062494.1 MGP_CASTEiJ_G0026765.1 mouse_genomes_project 3 95763186 95765807 + MGP_CASTEiJ_P0062494 Hist2h2be protein_coding protein_coding MGP_CASTEiJ_T0062747.1 MGP_CASTEiJ_G0026839.1 mouse_genomes_project 3 102301472 102354622 + MGP_CASTEiJ_P0062747 Ngf protein_coding protein_coding MGP_CASTEiJ_T0062748.1 MGP_CASTEiJ_G0026839.1 mouse_genomes_project 3 102301481 102343621 + MGP_CASTEiJ_P0062748 Ngf protein_coding protein_coding MGP_CASTEiJ_T0062749.1 MGP_CASTEiJ_G0026839.1 mouse_genomes_project 3 102301481 102354787 + MGP_CASTEiJ_P0062749 Ngf protein_coding protein_coding MGP_CASTEiJ_T0062750.1 MGP_CASTEiJ_G0026839.1 mouse_genomes_project 3 102320268 102354769 + MGP_CASTEiJ_P0062750 Ngf protein_coding protein_coding MGP_CASTEiJ_T0098899.1 MGP_CASTEiJ_G0035823.1 mouse_genomes_project 3 102324344 102327528 + Gm42679 sense_intronic sense_intronic MGP_CASTEiJ_T0013891.1 MGP_CASTEiJ_G0012054.1 mouse_genomes_project 3 141234101 141234545 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063505.1 MGP_CASTEiJ_G0027002.1 mouse_genomes_project 3 123999222 124025831 - MGP_CASTEiJ_P0063505 Myoz2 protein_coding protein_coding MGP_CASTEiJ_T0063506.1 MGP_CASTEiJ_G0027002.1 mouse_genomes_project 3 123999533 124025660 - MGP_CASTEiJ_P0063506 Myoz2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063507.1 MGP_CASTEiJ_G0027002.1 mouse_genomes_project 3 123999618 124025820 - Myoz2 protein_coding processed_transcript MGP_CASTEiJ_T0063508.1 MGP_CASTEiJ_G0027002.1 mouse_genomes_project 3 124006678 124025779 - Myoz2 protein_coding processed_transcript MGP_CASTEiJ_T0063509.1 MGP_CASTEiJ_G0027002.1 mouse_genomes_project 3 124014800 124025768 - Myoz2 protein_coding retained_intron MGP_CASTEiJ_T0007443.1 MGP_CASTEiJ_G0006103.1 mouse_genomes_project 3 96005893 96019421 + Gm10685 lincRNA lincRNA MGP_CASTEiJ_T0013652.1 MGP_CASTEiJ_G0011815.1 mouse_genomes_project 3 64730183 64730607 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007376.1 MGP_CASTEiJ_G0006054.1 mouse_genomes_project 3 66347146 66349537 - 4930402C01Rik lincRNA lincRNA MGP_CASTEiJ_T0061151.1 MGP_CASTEiJ_G0026468.1 mouse_genomes_project 3 74307190 74342051 - MGP_CASTEiJ_P0061151 Serpini2 protein_coding protein_coding MGP_CASTEiJ_T0004100.1 MGP_CASTEiJ_G0003616.1 mouse_genomes_project 3 34766365 34774165 - Gm12531 antisense antisense MGP_CASTEiJ_T0004101.1 MGP_CASTEiJ_G0003616.1 mouse_genomes_project 3 34766367 34774160 - Gm12531 antisense antisense MGP_CASTEiJ_T0007389.1 MGP_CASTEiJ_G0006065.1 mouse_genomes_project 3 75039017 75086552 + Gm37256 lincRNA lincRNA MGP_CASTEiJ_T0060004.1 MGP_CASTEiJ_G0026236.1 mouse_genomes_project 3 7677061 7696537 - MGP_CASTEiJ_P0060004 Impa1 protein_coding protein_coding MGP_CASTEiJ_T0060005.1 MGP_CASTEiJ_G0026236.1 mouse_genomes_project 3 7679128 7696537 - MGP_CASTEiJ_P0060005 Impa1 protein_coding protein_coding MGP_CASTEiJ_T0060006.1 MGP_CASTEiJ_G0026236.1 mouse_genomes_project 3 7680300 7681758 - Impa1 protein_coding retained_intron MGP_CASTEiJ_T0060007.1 MGP_CASTEiJ_G0026236.1 mouse_genomes_project 3 7680368 7696725 - MGP_CASTEiJ_P0060007 Impa1 protein_coding protein_coding MGP_CASTEiJ_T0060009.1 MGP_CASTEiJ_G0026236.1 mouse_genomes_project 3 7691255 7696229 - MGP_CASTEiJ_P0060009 Impa1 protein_coding protein_coding MGP_CASTEiJ_T0004109.1 MGP_CASTEiJ_G0003624.1 mouse_genomes_project 3 50269316 50279997 + Gm20089 antisense antisense MGP_CASTEiJ_T0001204.1 MGP_CASTEiJ_G0001135.1 mouse_genomes_project 3 84764381 84766956 - TEC TEC MGP_CASTEiJ_T0061589.1 MGP_CASTEiJ_G0026562.1 mouse_genomes_project 3 88340132 88343230 - MGP_CASTEiJ_P0061589 Lamtor2 protein_coding protein_coding MGP_CASTEiJ_T0061590.1 MGP_CASTEiJ_G0026562.1 mouse_genomes_project 3 88340141 88341449 - Lamtor2 protein_coding retained_intron MGP_CASTEiJ_T0061591.1 MGP_CASTEiJ_G0026562.1 mouse_genomes_project 3 88340143 88343260 - Lamtor2 protein_coding processed_transcript MGP_CASTEiJ_T0061592.1 MGP_CASTEiJ_G0026562.1 mouse_genomes_project 3 88342596 88343441 - Lamtor2 protein_coding retained_intron MGP_CASTEiJ_T0013648.1 MGP_CASTEiJ_G0011811.1 mouse_genomes_project 3 62584618 62586571 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100958.1 MGP_CASTEiJ_G0037871.1 mouse_genomes_project 3 54968812 54968943 - Gm25727 snoRNA snoRNA MGP_CASTEiJ_T0061070.1 MGP_CASTEiJ_G0026448.1 mouse_genomes_project 3 66682192 66855926 + MGP_CASTEiJ_P0061070 Iqcj protein_coding protein_coding MGP_CASTEiJ_T0061072.1 MGP_CASTEiJ_G0026448.1 mouse_genomes_project 3 66682285 66863441 + MGP_CASTEiJ_P0061072 Iqcj protein_coding unknown_likely_coding MGP_CASTEiJ_T0004149.1 MGP_CASTEiJ_G0003654.1 mouse_genomes_project 3 89060825 89062411 - Gm16069 antisense antisense MGP_CASTEiJ_T0061602.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88396899 88403857 + Arhgef2 protein_coding processed_transcript MGP_CASTEiJ_T0061603.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88397104 88406625 + Arhgef2 protein_coding processed_transcript MGP_CASTEiJ_T0061604.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88397236 88438939 + MGP_CASTEiJ_P0061604 Arhgef2 protein_coding protein_coding MGP_CASTEiJ_T0061605.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88403700 88406787 + Arhgef2 protein_coding processed_transcript MGP_CASTEiJ_T0061606.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88403888 88425594 + MGP_CASTEiJ_P0061606 Arhgef2 protein_coding protein_coding MGP_CASTEiJ_T0061607.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88404646 88426512 + MGP_CASTEiJ_P0061607 Arhgef2 protein_coding protein_coding MGP_CASTEiJ_T0061608.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88405428 88439542 + MGP_CASTEiJ_P0061608 Arhgef2 protein_coding protein_coding MGP_CASTEiJ_T0061609.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88405428 88440044 + MGP_CASTEiJ_P0061609 Arhgef2 protein_coding protein_coding MGP_CASTEiJ_T0061610.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88405802 88438905 + MGP_CASTEiJ_P0061610 Arhgef2 protein_coding protein_coding MGP_CASTEiJ_T0061611.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88413139 88438873 + MGP_CASTEiJ_P0061611 Arhgef2 protein_coding protein_coding MGP_CASTEiJ_T0061612.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88413152 88431519 + Arhgef2 protein_coding retained_intron MGP_CASTEiJ_T0061613.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88413273 88441491 + MGP_CASTEiJ_P0061613 Arhgef2 protein_coding protein_coding MGP_CASTEiJ_T0061614.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88413306 88440042 + MGP_CASTEiJ_P0061614 Arhgef2 protein_coding protein_coding MGP_CASTEiJ_T0061615.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88413474 88426475 + Arhgef2 protein_coding retained_intron MGP_CASTEiJ_T0061616.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88413562 88425059 + Arhgef2 protein_coding retained_intron MGP_CASTEiJ_T0061617.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88414473 88424925 + MGP_CASTEiJ_P0061617 Arhgef2 protein_coding protein_coding MGP_CASTEiJ_T0061618.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88414932 88432691 + MGP_CASTEiJ_P0061618 Arhgef2 protein_coding protein_coding MGP_CASTEiJ_T0061619.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88415379 88425616 + MGP_CASTEiJ_P0061619 Arhgef2 protein_coding protein_coding MGP_CASTEiJ_T0061620.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88421428 88424975 + MGP_CASTEiJ_P0061620 Arhgef2 protein_coding protein_coding MGP_CASTEiJ_T0061621.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88421455 88424090 + Arhgef2 protein_coding retained_intron MGP_CASTEiJ_T0061622.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88421459 88424991 + MGP_CASTEiJ_P0061622 Arhgef2 protein_coding protein_coding MGP_CASTEiJ_T0061623.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88421557 88424323 + MGP_CASTEiJ_P0061623 Arhgef2 protein_coding protein_coding MGP_CASTEiJ_T0061624.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88423899 88426675 + Arhgef2 protein_coding processed_transcript MGP_CASTEiJ_T0061625.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88424184 88425589 + Arhgef2 protein_coding retained_intron MGP_CASTEiJ_T0061626.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88424731 88425637 + Arhgef2 protein_coding retained_intron MGP_CASTEiJ_T0061627.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88424916 88429815 + Arhgef2 protein_coding retained_intron MGP_CASTEiJ_T0061628.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88426335 88427089 + Arhgef2 protein_coding retained_intron MGP_CASTEiJ_T0061629.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88434414 88435898 + Arhgef2 protein_coding retained_intron MGP_CASTEiJ_T0061630.1 MGP_CASTEiJ_G0026565.1 mouse_genomes_project 3 88435917 88438975 + Arhgef2 protein_coding processed_transcript MGP_CASTEiJ_T0060516.1 MGP_CASTEiJ_G0026337.1 mouse_genomes_project 3 35030924 35041598 + MGP_CASTEiJ_P0060516 Bbs12 protein_coding protein_coding MGP_CASTEiJ_T0060517.1 MGP_CASTEiJ_G0026337.1 mouse_genomes_project 3 35030926 35041602 + MGP_CASTEiJ_P0060517 Bbs12 protein_coding protein_coding MGP_CASTEiJ_T0098880.1 MGP_CASTEiJ_G0035804.1 mouse_genomes_project 3 93828758 93833641 + Gm42463 sense_intronic sense_intronic MGP_CASTEiJ_T0060000.1 MGP_CASTEiJ_G0026235.1 mouse_genomes_project 3 7602992 7664442 - MGP_CASTEiJ_P0060000 Fabp12 protein_coding protein_coding MGP_CASTEiJ_T0060001.1 MGP_CASTEiJ_G0026235.1 mouse_genomes_project 3 7604680 7612604 - MGP_CASTEiJ_P0060001 Fabp12 protein_coding protein_coding MGP_CASTEiJ_T0060002.1 MGP_CASTEiJ_G0026235.1 mouse_genomes_project 3 7604680 7612577 - MGP_CASTEiJ_P0060002 Fabp12 protein_coding protein_coding MGP_CASTEiJ_T0060003.1 MGP_CASTEiJ_G0026235.1 mouse_genomes_project 3 7604713 7664433 - MGP_CASTEiJ_P0060003 Fabp12 protein_coding protein_coding MGP_CASTEiJ_T0060890.1 MGP_CASTEiJ_G0026407.1 mouse_genomes_project 3 57276827 57294555 - MGP_CASTEiJ_P0060890 Siah2 protein_coding protein_coding MGP_CASTEiJ_T0060891.1 MGP_CASTEiJ_G0026407.1 mouse_genomes_project 3 57278065 57288296 - Siah2 protein_coding processed_transcript MGP_CASTEiJ_T0013922.1 MGP_CASTEiJ_G0012085.1 mouse_genomes_project 3 156913177 156913515 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062673.1 MGP_CASTEiJ_G0026821.1 mouse_genomes_project 3 99588062 99663833 + Spag17 protein_coding processed_transcript MGP_CASTEiJ_T0062674.1 MGP_CASTEiJ_G0026821.1 mouse_genomes_project 3 99588073 99852495 + MGP_CASTEiJ_P0062674 Spag17 protein_coding protein_coding MGP_CASTEiJ_T0062675.1 MGP_CASTEiJ_G0026821.1 mouse_genomes_project 3 99729319 99735368 + Spag17 protein_coding retained_intron MGP_CASTEiJ_T0062676.1 MGP_CASTEiJ_G0026821.1 mouse_genomes_project 3 99735311 99746652 + Spag17 protein_coding retained_intron MGP_CASTEiJ_T0061955.1 MGP_CASTEiJ_G0026619.1 mouse_genomes_project 3 90215976 90222842 - MGP_CASTEiJ_P0061955 Creb3l4 protein_coding protein_coding MGP_CASTEiJ_T0061956.1 MGP_CASTEiJ_G0026619.1 mouse_genomes_project 3 90216046 90222473 - MGP_CASTEiJ_P0061956 Creb3l4 protein_coding protein_coding MGP_CASTEiJ_T0098375.1 MGP_CASTEiJ_G0035306.1 mouse_genomes_project 3 84529191 84529716 - pseudogene pseudogene MGP_CASTEiJ_T0007538.1 MGP_CASTEiJ_G0006183.1 mouse_genomes_project 3 142677646 142678023 - lincRNA lincRNA MGP_CASTEiJ_T0013926.1 MGP_CASTEiJ_G0012089.1 mouse_genomes_project 3 160323536 160324306 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007532.1 MGP_CASTEiJ_G0006177.1 mouse_genomes_project 3 139418239 139431169 + lincRNA lincRNA MGP_CASTEiJ_T0013535.1 MGP_CASTEiJ_G0011698.1 mouse_genomes_project 3 21775374 21776025 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062424.1 MGP_CASTEiJ_G0026749.1 mouse_genomes_project 3 95342634 95369795 - MGP_CASTEiJ_P0062424 Prpf3 protein_coding protein_coding MGP_CASTEiJ_T0062425.1 MGP_CASTEiJ_G0026749.1 mouse_genomes_project 3 95343099 95348179 - MGP_CASTEiJ_P0062425 Prpf3 protein_coding protein_coding MGP_CASTEiJ_T0062426.1 MGP_CASTEiJ_G0026749.1 mouse_genomes_project 3 95343128 95361908 - Prpf3 protein_coding retained_intron MGP_CASTEiJ_T0062427.1 MGP_CASTEiJ_G0026749.1 mouse_genomes_project 3 95343132 95345318 - Prpf3 protein_coding retained_intron MGP_CASTEiJ_T0062428.1 MGP_CASTEiJ_G0026749.1 mouse_genomes_project 3 95343132 95369663 - MGP_CASTEiJ_P0062428 Prpf3 protein_coding protein_coding MGP_CASTEiJ_T0062429.1 MGP_CASTEiJ_G0026749.1 mouse_genomes_project 3 95349006 95357502 - Prpf3 protein_coding processed_transcript MGP_CASTEiJ_T0062430.1 MGP_CASTEiJ_G0026749.1 mouse_genomes_project 3 95356137 95358519 - Prpf3 protein_coding retained_intron MGP_CASTEiJ_T0062431.1 MGP_CASTEiJ_G0026749.1 mouse_genomes_project 3 95359784 95365973 - MGP_CASTEiJ_P0062431 Prpf3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062432.1 MGP_CASTEiJ_G0026749.1 mouse_genomes_project 3 95361869 95369691 - Prpf3 protein_coding retained_intron MGP_CASTEiJ_T0007536.1 MGP_CASTEiJ_G0006181.1 mouse_genomes_project 3 140513276 140532464 - 4930425O10Rik lincRNA lincRNA MGP_CASTEiJ_T0013694.1 MGP_CASTEiJ_G0011857.1 mouse_genomes_project 3 77313296 77313846 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061081.1 MGP_CASTEiJ_G0026451.1 mouse_genomes_project 3 67503423 67511295 + MGP_CASTEiJ_P0061081 Il12a protein_coding protein_coding MGP_CASTEiJ_T0061082.1 MGP_CASTEiJ_G0026451.1 mouse_genomes_project 3 67504206 67511291 + MGP_CASTEiJ_P0061082 Il12a protein_coding protein_coding MGP_CASTEiJ_T0061083.1 MGP_CASTEiJ_G0026451.1 mouse_genomes_project 3 67504309 67510849 + Il12a protein_coding retained_intron MGP_CASTEiJ_T0061084.1 MGP_CASTEiJ_G0026451.1 mouse_genomes_project 3 67506781 67510781 + Il12a protein_coding retained_intron MGP_CASTEiJ_T0061085.1 MGP_CASTEiJ_G0026451.1 mouse_genomes_project 3 67506809 67511295 + Il12a protein_coding retained_intron MGP_CASTEiJ_T0061086.1 MGP_CASTEiJ_G0026451.1 mouse_genomes_project 3 67506809 67511293 + Il12a protein_coding retained_intron MGP_CASTEiJ_T0060377.1 MGP_CASTEiJ_G0026314.1 mouse_genomes_project 3 31353880 31368931 + MGP_CASTEiJ_P0060377 Ttc14 protein_coding protein_coding MGP_CASTEiJ_T0060378.1 MGP_CASTEiJ_G0026314.1 mouse_genomes_project 3 31354223 31354920 + Ttc14 protein_coding retained_intron MGP_CASTEiJ_T0060379.1 MGP_CASTEiJ_G0026314.1 mouse_genomes_project 3 31354231 31355551 + Ttc14 protein_coding retained_intron MGP_CASTEiJ_T0060380.1 MGP_CASTEiJ_G0026314.1 mouse_genomes_project 3 31354239 31362110 + MGP_CASTEiJ_P0060380 Ttc14 protein_coding protein_coding MGP_CASTEiJ_T0060381.1 MGP_CASTEiJ_G0026314.1 mouse_genomes_project 3 31354239 31357001 + MGP_CASTEiJ_P0060381 Ttc14 protein_coding protein_coding MGP_CASTEiJ_T0060382.1 MGP_CASTEiJ_G0026314.1 mouse_genomes_project 3 31354258 31361966 + MGP_CASTEiJ_P0060382 Ttc14 protein_coding protein_coding MGP_CASTEiJ_T0060383.1 MGP_CASTEiJ_G0026314.1 mouse_genomes_project 3 31354261 31363743 + MGP_CASTEiJ_P0060383 Ttc14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060384.1 MGP_CASTEiJ_G0026314.1 mouse_genomes_project 3 31354261 31366356 + MGP_CASTEiJ_P0060384 Ttc14 protein_coding protein_coding MGP_CASTEiJ_T0060385.1 MGP_CASTEiJ_G0026314.1 mouse_genomes_project 3 31354299 31363975 + MGP_CASTEiJ_P0060385 Ttc14 protein_coding protein_coding MGP_CASTEiJ_T0060386.1 MGP_CASTEiJ_G0026314.1 mouse_genomes_project 3 31354311 31361564 + MGP_CASTEiJ_P0060386 Ttc14 protein_coding protein_coding MGP_CASTEiJ_T0060387.1 MGP_CASTEiJ_G0026314.1 mouse_genomes_project 3 31355251 31362098 + MGP_CASTEiJ_P0060387 Ttc14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060388.1 MGP_CASTEiJ_G0026314.1 mouse_genomes_project 3 31356612 31357182 + Ttc14 protein_coding retained_intron MGP_CASTEiJ_T0098884.1 MGP_CASTEiJ_G0035808.1 mouse_genomes_project 3 97975714 97978761 + Gm43189 sense_intronic sense_intronic MGP_CASTEiJ_T0007412.1 MGP_CASTEiJ_G0006085.1 mouse_genomes_project 3 87945926 87950198 + Gm3764 lincRNA lincRNA MGP_CASTEiJ_T0007413.1 MGP_CASTEiJ_G0006085.1 mouse_genomes_project 3 87945939 87966320 + Gm3764 lincRNA lincRNA MGP_CASTEiJ_T0007414.1 MGP_CASTEiJ_G0006085.1 mouse_genomes_project 3 87948374 87965172 + Gm3764 lincRNA lincRNA MGP_CASTEiJ_T0007415.1 MGP_CASTEiJ_G0006085.1 mouse_genomes_project 3 87948537 87966877 + Gm3764 lincRNA lincRNA MGP_CASTEiJ_T0007416.1 MGP_CASTEiJ_G0006085.1 mouse_genomes_project 3 87955486 87962750 + Gm3764 lincRNA lincRNA MGP_CASTEiJ_T0007417.1 MGP_CASTEiJ_G0006085.1 mouse_genomes_project 3 87955496 87966928 + Gm3764 lincRNA lincRNA MGP_CASTEiJ_T0007418.1 MGP_CASTEiJ_G0006085.1 mouse_genomes_project 3 87963555 87965186 + Gm3764 lincRNA lincRNA MGP_CASTEiJ_T0007419.1 MGP_CASTEiJ_G0006085.1 mouse_genomes_project 3 87965163 87970817 + Gm3764 lincRNA lincRNA MGP_CASTEiJ_T0007420.1 MGP_CASTEiJ_G0006085.1 mouse_genomes_project 3 87966814 87968893 + Gm3764 lincRNA lincRNA MGP_CASTEiJ_T0007421.1 MGP_CASTEiJ_G0006085.1 mouse_genomes_project 3 87969411 87970628 + Gm3764 lincRNA lincRNA MGP_CASTEiJ_T0007422.1 MGP_CASTEiJ_G0006085.1 mouse_genomes_project 3 87969626 87970817 + Gm3764 lincRNA lincRNA MGP_CASTEiJ_T0001155.1 MGP_CASTEiJ_G0001086.1 mouse_genomes_project 3 50354905 50361946 - TEC TEC MGP_CASTEiJ_T0013529.1 MGP_CASTEiJ_G0011692.1 mouse_genomes_project 3 18349132 18349553 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063954.1 MGP_CASTEiJ_G0027080.1 mouse_genomes_project 3 139914483 139926930 + protein_coding retained_intron MGP_CASTEiJ_T0063955.1 MGP_CASTEiJ_G0027080.1 mouse_genomes_project 3 139914491 139929388 + MGP_CASTEiJ_P0063955 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063956.1 MGP_CASTEiJ_G0027080.1 mouse_genomes_project 3 139914813 139919398 + MGP_CASTEiJ_P0063956 protein_coding protein_coding MGP_CASTEiJ_T0063957.1 MGP_CASTEiJ_G0027080.1 mouse_genomes_project 3 139914875 139919500 + MGP_CASTEiJ_P0063957 protein_coding protein_coding MGP_CASTEiJ_T0063958.1 MGP_CASTEiJ_G0027080.1 mouse_genomes_project 3 139914924 139921571 + MGP_CASTEiJ_P0063958 protein_coding protein_coding MGP_CASTEiJ_T0007588.1 MGP_CASTEiJ_G0006220.1 mouse_genomes_project 3 154546449 154550188 + lincRNA lincRNA MGP_CASTEiJ_T0063158.1 MGP_CASTEiJ_G0026935.1 mouse_genomes_project 3 108814598 108834917 - MGP_CASTEiJ_P0063158 Sars protein_coding protein_coding MGP_CASTEiJ_T0063159.1 MGP_CASTEiJ_G0026935.1 mouse_genomes_project 3 108816320 108834888 - MGP_CASTEiJ_P0063159 Sars protein_coding protein_coding MGP_CASTEiJ_T0063160.1 MGP_CASTEiJ_G0026935.1 mouse_genomes_project 3 108817940 108834862 - MGP_CASTEiJ_P0063160 Sars protein_coding protein_coding MGP_CASTEiJ_T0063161.1 MGP_CASTEiJ_G0026935.1 mouse_genomes_project 3 108819059 108834928 - MGP_CASTEiJ_P0063161 Sars protein_coding protein_coding MGP_CASTEiJ_T0063162.1 MGP_CASTEiJ_G0026935.1 mouse_genomes_project 3 108824110 108834875 - Sars protein_coding retained_intron MGP_CASTEiJ_T0013713.1 MGP_CASTEiJ_G0011876.1 mouse_genomes_project 3 86592885 86593180 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061815.1 MGP_CASTEiJ_G0026596.1 mouse_genomes_project 3 89277787 89287321 - MGP_CASTEiJ_P0061815 Zbtb7b protein_coding protein_coding MGP_CASTEiJ_T0061816.1 MGP_CASTEiJ_G0026596.1 mouse_genomes_project 3 89277787 89292229 - MGP_CASTEiJ_P0061816 Zbtb7b protein_coding protein_coding MGP_CASTEiJ_T0061817.1 MGP_CASTEiJ_G0026596.1 mouse_genomes_project 3 89277787 89287803 - MGP_CASTEiJ_P0061817 Zbtb7b protein_coding protein_coding MGP_CASTEiJ_T0061818.1 MGP_CASTEiJ_G0026596.1 mouse_genomes_project 3 89277787 89293436 - MGP_CASTEiJ_P0061818 Zbtb7b protein_coding protein_coding MGP_CASTEiJ_T0061819.1 MGP_CASTEiJ_G0026596.1 mouse_genomes_project 3 89281283 89294184 - MGP_CASTEiJ_P0061819 Zbtb7b protein_coding protein_coding MGP_CASTEiJ_T0061820.1 MGP_CASTEiJ_G0026596.1 mouse_genomes_project 3 89281567 89294141 - MGP_CASTEiJ_P0061820 Zbtb7b protein_coding protein_coding MGP_CASTEiJ_T0061821.1 MGP_CASTEiJ_G0026596.1 mouse_genomes_project 3 89292671 89295286 - Zbtb7b protein_coding processed_transcript MGP_CASTEiJ_T0013472.1 MGP_CASTEiJ_G0011635.1 mouse_genomes_project 3 3942031 3942377 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099723.1 MGP_CASTEiJ_G0036636.1 mouse_genomes_project 3 90170130 90170235 + Gm24185 snRNA snRNA MGP_CASTEiJ_T0064481.1 MGP_CASTEiJ_G0027169.1 mouse_genomes_project 3 160979911 161014989 + MGP_CASTEiJ_P0064481 Lrrc40 protein_coding protein_coding MGP_CASTEiJ_T0064482.1 MGP_CASTEiJ_G0027169.1 mouse_genomes_project 3 160979949 161013592 + MGP_CASTEiJ_P0064482 Lrrc40 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064483.1 MGP_CASTEiJ_G0027169.1 mouse_genomes_project 3 160979951 161013592 + MGP_CASTEiJ_P0064483 Lrrc40 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064484.1 MGP_CASTEiJ_G0027169.1 mouse_genomes_project 3 160979971 160998533 + MGP_CASTEiJ_P0064484 Lrrc40 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064485.1 MGP_CASTEiJ_G0027169.1 mouse_genomes_project 3 160979999 160998522 + MGP_CASTEiJ_P0064485 Lrrc40 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064486.1 MGP_CASTEiJ_G0027169.1 mouse_genomes_project 3 160980109 160998468 + MGP_CASTEiJ_P0064486 Lrrc40 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064487.1 MGP_CASTEiJ_G0027169.1 mouse_genomes_project 3 161008946 161013051 + Lrrc40 protein_coding retained_intron MGP_CASTEiJ_T0064488.1 MGP_CASTEiJ_G0027169.1 mouse_genomes_project 3 161009347 161010721 + Lrrc40 protein_coding retained_intron MGP_CASTEiJ_T0099752.1 MGP_CASTEiJ_G0036665.1 mouse_genomes_project 3 134079294 134079400 - Gm25307 snRNA snRNA MGP_CASTEiJ_T0099716.1 MGP_CASTEiJ_G0036629.1 mouse_genomes_project 3 86015397 86015504 + Gm25039 snRNA snRNA MGP_CASTEiJ_T0013730.1 MGP_CASTEiJ_G0011893.1 mouse_genomes_project 3 91945348 91945976 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013831.1 MGP_CASTEiJ_G0011994.1 mouse_genomes_project 3 122766955 122767332 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001317.1 MGP_CASTEiJ_G0001247.1 mouse_genomes_project 3 143646189 143648845 + TEC TEC MGP_CASTEiJ_T0013812.1 MGP_CASTEiJ_G0011975.1 mouse_genomes_project 3 115316942 115317594 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061073.1 MGP_CASTEiJ_G0026450.1 mouse_genomes_project 3 66864160 67435433 + MGP_CASTEiJ_P0061073 protein_coding protein_coding MGP_CASTEiJ_T0061074.1 MGP_CASTEiJ_G0026450.1 mouse_genomes_project 3 66864160 67435433 + MGP_CASTEiJ_P0061074 protein_coding protein_coding MGP_CASTEiJ_T0061075.1 MGP_CASTEiJ_G0026450.1 mouse_genomes_project 3 67273919 67435450 + MGP_CASTEiJ_P0061075 protein_coding protein_coding MGP_CASTEiJ_T0061076.1 MGP_CASTEiJ_G0026450.1 mouse_genomes_project 3 67299612 67426962 + MGP_CASTEiJ_P0061076 protein_coding protein_coding MGP_CASTEiJ_T0061077.1 MGP_CASTEiJ_G0026450.1 mouse_genomes_project 3 67300326 67435432 + MGP_CASTEiJ_P0061077 protein_coding protein_coding MGP_CASTEiJ_T0061078.1 MGP_CASTEiJ_G0026450.1 mouse_genomes_project 3 67377284 67435433 + MGP_CASTEiJ_P0061078 protein_coding protein_coding MGP_CASTEiJ_T0061079.1 MGP_CASTEiJ_G0026450.1 mouse_genomes_project 3 67389228 67435433 + MGP_CASTEiJ_P0061079 protein_coding protein_coding MGP_CASTEiJ_T0061080.1 MGP_CASTEiJ_G0026450.1 mouse_genomes_project 3 67402598 67404602 + protein_coding retained_intron MGP_CASTEiJ_T0102263.1 MGP_CASTEiJ_G0038988.1 mouse_genomes_project 3 58118014 58118279 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0007335.1 MGP_CASTEiJ_G0006026.1 mouse_genomes_project 3 39124111 39139163 + Gm30852 lincRNA lincRNA MGP_CASTEiJ_T0007336.1 MGP_CASTEiJ_G0006026.1 mouse_genomes_project 3 39137659 39164577 + Gm30852 lincRNA lincRNA MGP_CASTEiJ_T0100996.1 MGP_CASTEiJ_G0037909.1 mouse_genomes_project 3 125509293 125509423 + Gm22900 snoRNA snoRNA MGP_CASTEiJ_T0060255.1 MGP_CASTEiJ_G0026290.1 mouse_genomes_project 3 28073915 28095465 + MGP_CASTEiJ_P0060255 Mynn protein_coding protein_coding MGP_CASTEiJ_T0060256.1 MGP_CASTEiJ_G0026290.1 mouse_genomes_project 3 28074481 28095465 + MGP_CASTEiJ_P0060256 Mynn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060257.1 MGP_CASTEiJ_G0026290.1 mouse_genomes_project 3 28074487 28093960 + MGP_CASTEiJ_P0060257 Mynn protein_coding protein_coding MGP_CASTEiJ_T0060258.1 MGP_CASTEiJ_G0026290.1 mouse_genomes_project 3 28074489 28076012 + Mynn protein_coding retained_intron MGP_CASTEiJ_T0060259.1 MGP_CASTEiJ_G0026290.1 mouse_genomes_project 3 28074494 28094092 + MGP_CASTEiJ_P0060259 Mynn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060260.1 MGP_CASTEiJ_G0026290.1 mouse_genomes_project 3 28087076 28092386 + Mynn protein_coding retained_intron MGP_CASTEiJ_T0013612.1 MGP_CASTEiJ_G0011775.1 mouse_genomes_project 3 51313361 51313680 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001077.1 MGP_CASTEiJ_G0001010.1 mouse_genomes_project 3 26593459 26596797 + TEC TEC MGP_CASTEiJ_T0001278.1 MGP_CASTEiJ_G0001209.1 mouse_genomes_project 3 128198735 128203118 - TEC TEC MGP_CASTEiJ_T0062204.1 MGP_CASTEiJ_G0026714.1 mouse_genomes_project 3 94372568 94383936 + MGP_CASTEiJ_P0062204 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062205.1 MGP_CASTEiJ_G0026714.1 mouse_genomes_project 3 94372578 94379305 + protein_coding retained_intron MGP_CASTEiJ_T0062207.1 MGP_CASTEiJ_G0026714.1 mouse_genomes_project 3 94372632 94383936 + MGP_CASTEiJ_P0062207 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062209.1 MGP_CASTEiJ_G0026714.1 mouse_genomes_project 3 94372671 94377582 + protein_coding processed_transcript MGP_CASTEiJ_T0013481.1 MGP_CASTEiJ_G0011644.1 mouse_genomes_project 3 6153138 6153466 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013598.1 MGP_CASTEiJ_G0011761.1 mouse_genomes_project 3 47427725 47428081 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102299.1 MGP_CASTEiJ_G0039024.1 mouse_genomes_project 3 123057643 123175065 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0060173.1 MGP_CASTEiJ_G0026277.1 mouse_genomes_project 3 24489772 24552869 + MGP_CASTEiJ_P0060173 Nceh1 protein_coding protein_coding MGP_CASTEiJ_T0060174.1 MGP_CASTEiJ_G0026277.1 mouse_genomes_project 3 24489811 24534235 + Nceh1 protein_coding retained_intron MGP_CASTEiJ_T0060175.1 MGP_CASTEiJ_G0026277.1 mouse_genomes_project 3 24489811 24593336 + MGP_CASTEiJ_P0060175 Nceh1 protein_coding protein_coding MGP_CASTEiJ_T0060176.1 MGP_CASTEiJ_G0026277.1 mouse_genomes_project 3 24489811 24530587 + MGP_CASTEiJ_P0060176 Nceh1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060177.1 MGP_CASTEiJ_G0026277.1 mouse_genomes_project 3 24495262 24547494 + Nceh1 protein_coding processed_transcript MGP_CASTEiJ_T0007484.1 MGP_CASTEiJ_G0006138.1 mouse_genomes_project 3 117888045 117888734 + Gm42891 lincRNA lincRNA MGP_CASTEiJ_T0004191.1 MGP_CASTEiJ_G0003684.1 mouse_genomes_project 3 103680484 103683020 + Gm15886 antisense antisense MGP_CASTEiJ_T0004192.1 MGP_CASTEiJ_G0003684.1 mouse_genomes_project 3 103680505 103698741 + Gm15886 antisense antisense MGP_CASTEiJ_T0004193.1 MGP_CASTEiJ_G0003684.1 mouse_genomes_project 3 103680840 103686585 + Gm15886 antisense antisense MGP_CASTEiJ_T0004194.1 MGP_CASTEiJ_G0003684.1 mouse_genomes_project 3 103686003 103686996 + Gm15886 antisense antisense MGP_CASTEiJ_T0007347.1 MGP_CASTEiJ_G0006032.1 mouse_genomes_project 3 47257168 47278488 + Gm31415 lincRNA lincRNA MGP_CASTEiJ_T0062136.1 MGP_CASTEiJ_G0026703.1 mouse_genomes_project 3 93828639 93852767 + MGP_CASTEiJ_P0062136 Tdrkh protein_coding protein_coding MGP_CASTEiJ_T0062137.1 MGP_CASTEiJ_G0026703.1 mouse_genomes_project 3 93828642 93846955 + MGP_CASTEiJ_P0062137 Tdrkh protein_coding protein_coding MGP_CASTEiJ_T0062138.1 MGP_CASTEiJ_G0026703.1 mouse_genomes_project 3 93828666 93840952 + MGP_CASTEiJ_P0062138 Tdrkh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062139.1 MGP_CASTEiJ_G0026703.1 mouse_genomes_project 3 93828683 93842711 + MGP_CASTEiJ_P0062139 Tdrkh protein_coding protein_coding MGP_CASTEiJ_T0062140.1 MGP_CASTEiJ_G0026703.1 mouse_genomes_project 3 93828684 93847851 + MGP_CASTEiJ_P0062140 Tdrkh protein_coding protein_coding MGP_CASTEiJ_T0062141.1 MGP_CASTEiJ_G0026703.1 mouse_genomes_project 3 93828684 93847835 + MGP_CASTEiJ_P0062141 Tdrkh protein_coding protein_coding MGP_CASTEiJ_T0062142.1 MGP_CASTEiJ_G0026703.1 mouse_genomes_project 3 93838149 93847853 + MGP_CASTEiJ_P0062142 Tdrkh protein_coding protein_coding MGP_CASTEiJ_T0062143.1 MGP_CASTEiJ_G0026703.1 mouse_genomes_project 3 93838149 93847840 + MGP_CASTEiJ_P0062143 Tdrkh protein_coding protein_coding MGP_CASTEiJ_T0060720.1 MGP_CASTEiJ_G0026372.1 mouse_genomes_project 3 51399679 51610697 + MGP_CASTEiJ_P0060720 Lhfp protein_coding protein_coding MGP_CASTEiJ_T0060721.1 MGP_CASTEiJ_G0026372.1 mouse_genomes_project 3 51399710 51610693 + Lhfp protein_coding processed_transcript MGP_CASTEiJ_T0060722.1 MGP_CASTEiJ_G0026372.1 mouse_genomes_project 3 51399734 51610697 + MGP_CASTEiJ_P0060722 Lhfp protein_coding protein_coding MGP_CASTEiJ_T0060723.1 MGP_CASTEiJ_G0026372.1 mouse_genomes_project 3 51579343 51582405 + Lhfp protein_coding retained_intron MGP_CASTEiJ_T0007263.1 MGP_CASTEiJ_G0005971.1 mouse_genomes_project 3 6363486 6372329 + 4930539M17Rik lincRNA lincRNA MGP_CASTEiJ_T0011220.1 MGP_CASTEiJ_G0009408.1 mouse_genomes_project 3 125895224 125895519 + Gm23673 misc_RNA misc_RNA MGP_CASTEiJ_T0004267.1 MGP_CASTEiJ_G0003730.1 mouse_genomes_project 3 143623557 143642077 - Gm15689 antisense antisense MGP_CASTEiJ_T0061517.1 MGP_CASTEiJ_G0026551.1 mouse_genomes_project 3 88073885 88080162 + MGP_CASTEiJ_P0061517 Glmp protein_coding protein_coding MGP_CASTEiJ_T0061518.1 MGP_CASTEiJ_G0026551.1 mouse_genomes_project 3 88073917 88078364 + Glmp protein_coding retained_intron MGP_CASTEiJ_T0061519.1 MGP_CASTEiJ_G0026551.1 mouse_genomes_project 3 88073920 88075441 + Glmp protein_coding retained_intron MGP_CASTEiJ_T0061520.1 MGP_CASTEiJ_G0026551.1 mouse_genomes_project 3 88073922 88076441 + Glmp protein_coding retained_intron MGP_CASTEiJ_T0061521.1 MGP_CASTEiJ_G0026551.1 mouse_genomes_project 3 88073934 88075330 + MGP_CASTEiJ_P0061521 Glmp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061522.1 MGP_CASTEiJ_G0026551.1 mouse_genomes_project 3 88073944 88077222 + MGP_CASTEiJ_P0061522 Glmp protein_coding protein_coding MGP_CASTEiJ_T0061523.1 MGP_CASTEiJ_G0026551.1 mouse_genomes_project 3 88073944 88077217 + MGP_CASTEiJ_P0061523 Glmp protein_coding protein_coding MGP_CASTEiJ_T0061524.1 MGP_CASTEiJ_G0026551.1 mouse_genomes_project 3 88073944 88077222 + MGP_CASTEiJ_P0061524 Glmp protein_coding protein_coding MGP_CASTEiJ_T0061525.1 MGP_CASTEiJ_G0026551.1 mouse_genomes_project 3 88074906 88077172 + Glmp protein_coding retained_intron MGP_CASTEiJ_T0061526.1 MGP_CASTEiJ_G0026551.1 mouse_genomes_project 3 88076926 88077435 + MGP_CASTEiJ_P0061526 Glmp protein_coding protein_coding MGP_CASTEiJ_T0061871.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89888470 89912319 - MGP_CASTEiJ_P0061871 Atp8b2 protein_coding protein_coding MGP_CASTEiJ_T0061872.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89888470 89909427 - MGP_CASTEiJ_P0061872 Atp8b2 protein_coding protein_coding MGP_CASTEiJ_T0061873.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89888478 89902279 - Atp8b2 protein_coding retained_intron MGP_CASTEiJ_T0061874.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89889149 89912077 - Atp8b2 protein_coding retained_intron MGP_CASTEiJ_T0061875.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89889842 89912319 - MGP_CASTEiJ_P0061875 Atp8b2 protein_coding protein_coding MGP_CASTEiJ_T0061876.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89890190 89892682 - MGP_CASTEiJ_P0061876 Atp8b2 protein_coding protein_coding MGP_CASTEiJ_T0061877.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89892638 89894656 - Atp8b2 protein_coding retained_intron MGP_CASTEiJ_T0061878.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89894112 89895365 - MGP_CASTEiJ_P0061878 Atp8b2 protein_coding protein_coding MGP_CASTEiJ_T0061879.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89894932 89895448 - Atp8b2 protein_coding retained_intron MGP_CASTEiJ_T0061880.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89895328 89896241 - Atp8b2 protein_coding retained_intron MGP_CASTEiJ_T0061881.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89895355 89897292 - MGP_CASTEiJ_P0061881 Atp8b2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061882.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89895419 89897422 - Atp8b2 protein_coding retained_intron MGP_CASTEiJ_T0061883.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89897434 89899344 - Atp8b2 protein_coding retained_intron MGP_CASTEiJ_T0061884.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89902752 89903556 - Atp8b2 protein_coding retained_intron MGP_CASTEiJ_T0061885.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89903182 89908352 - MGP_CASTEiJ_P0061885 Atp8b2 protein_coding protein_coding MGP_CASTEiJ_T0061886.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89906805 89911912 - MGP_CASTEiJ_P0061886 Atp8b2 protein_coding protein_coding MGP_CASTEiJ_T0061887.1 MGP_CASTEiJ_G0026610.1 mouse_genomes_project 3 89907351 89910613 - MGP_CASTEiJ_P0061887 Atp8b2 protein_coding protein_coding MGP_CASTEiJ_T0007533.1 MGP_CASTEiJ_G0006178.1 mouse_genomes_project 3 139536114 139544856 - Gm31678 lincRNA lincRNA MGP_CASTEiJ_T0013890.1 MGP_CASTEiJ_G0012053.1 mouse_genomes_project 3 140963639 140964077 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013749.1 MGP_CASTEiJ_G0011912.1 mouse_genomes_project 3 95623728 95623914 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013754.1 MGP_CASTEiJ_G0011917.1 mouse_genomes_project 3 97866395 97867532 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100977.1 MGP_CASTEiJ_G0037890.1 mouse_genomes_project 3 89962279 89962406 - Gm24608 snoRNA snoRNA MGP_CASTEiJ_T0060526.1 MGP_CASTEiJ_G0026339.1 mouse_genomes_project 3 35124116 35138765 - MGP_CASTEiJ_P0060526 Nudt6 protein_coding protein_coding MGP_CASTEiJ_T0060527.1 MGP_CASTEiJ_G0026339.1 mouse_genomes_project 3 35124116 35138781 - MGP_CASTEiJ_P0060527 Nudt6 protein_coding protein_coding MGP_CASTEiJ_T0060528.1 MGP_CASTEiJ_G0026339.1 mouse_genomes_project 3 35124116 35138765 - MGP_CASTEiJ_P0060528 Nudt6 protein_coding protein_coding MGP_CASTEiJ_T0060529.1 MGP_CASTEiJ_G0026339.1 mouse_genomes_project 3 35124116 35139383 - MGP_CASTEiJ_P0060529 Nudt6 protein_coding protein_coding MGP_CASTEiJ_T0060530.1 MGP_CASTEiJ_G0026339.1 mouse_genomes_project 3 35124188 35139408 - MGP_CASTEiJ_P0060530 Nudt6 protein_coding protein_coding MGP_CASTEiJ_T0060531.1 MGP_CASTEiJ_G0026339.1 mouse_genomes_project 3 35124192 35138775 - MGP_CASTEiJ_P0060531 Nudt6 protein_coding protein_coding MGP_CASTEiJ_T0060532.1 MGP_CASTEiJ_G0026339.1 mouse_genomes_project 3 35124281 35129892 - Nudt6 protein_coding processed_transcript MGP_CASTEiJ_T0060533.1 MGP_CASTEiJ_G0026339.1 mouse_genomes_project 3 35124558 35138758 - MGP_CASTEiJ_P0060533 Nudt6 protein_coding protein_coding MGP_CASTEiJ_T0060534.1 MGP_CASTEiJ_G0026339.1 mouse_genomes_project 3 35128724 35138742 - MGP_CASTEiJ_P0060534 Nudt6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060535.1 MGP_CASTEiJ_G0026339.1 mouse_genomes_project 3 35131586 35138751 - MGP_CASTEiJ_P0060535 Nudt6 protein_coding protein_coding MGP_CASTEiJ_T0060181.1 MGP_CASTEiJ_G0026280.1 mouse_genomes_project 3 24737734 25055154 - MGP_CASTEiJ_P0060181 Fndc3b protein_coding protein_coding MGP_CASTEiJ_T0060182.1 MGP_CASTEiJ_G0026280.1 mouse_genomes_project 3 24737734 25055113 - MGP_CASTEiJ_P0060182 Fndc3b protein_coding protein_coding MGP_CASTEiJ_T0060183.1 MGP_CASTEiJ_G0026280.1 mouse_genomes_project 3 24821665 25056022 - Fndc3b protein_coding retained_intron MGP_CASTEiJ_T0060184.1 MGP_CASTEiJ_G0026280.1 mouse_genomes_project 3 24828670 25055954 - MGP_CASTEiJ_P0060184 Fndc3b protein_coding protein_coding MGP_CASTEiJ_T0007531.1 MGP_CASTEiJ_G0006176.1 mouse_genomes_project 3 139034057 139044724 + Gm567 lincRNA lincRNA MGP_CASTEiJ_T0011203.1 MGP_CASTEiJ_G0009391.1 mouse_genomes_project 3 21940079 21940345 + Gm24062 misc_RNA misc_RNA MGP_CASTEiJ_T0001178.1 MGP_CASTEiJ_G0001109.1 mouse_genomes_project 3 59261402 59265388 + TEC TEC MGP_CASTEiJ_T0013516.1 MGP_CASTEiJ_G0011679.1 mouse_genomes_project 3 15754690 15755091 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060039.1 MGP_CASTEiJ_G0026245.1 mouse_genomes_project 3 12003137 12028006 + MGP_CASTEiJ_P0060039 E2f5 protein_coding protein_coding MGP_CASTEiJ_T0060040.1 MGP_CASTEiJ_G0026245.1 mouse_genomes_project 3 12003167 12028005 + MGP_CASTEiJ_P0060040 E2f5 protein_coding protein_coding MGP_CASTEiJ_T0007299.1 MGP_CASTEiJ_G0005995.1 mouse_genomes_project 3 27191025 27311609 - Gm33206 lincRNA lincRNA MGP_CASTEiJ_T0001087.1 MGP_CASTEiJ_G0001020.1 mouse_genomes_project 3 29454869 29459627 + TEC TEC MGP_CASTEiJ_T0013755.1 MGP_CASTEiJ_G0011918.1 mouse_genomes_project 3 97934981 97935470 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099693.1 MGP_CASTEiJ_G0036606.1 mouse_genomes_project 3 47887158 47887265 + Gm23096 snRNA snRNA MGP_CASTEiJ_T0100953.1 MGP_CASTEiJ_G0037866.1 mouse_genomes_project 3 45273222 45273360 + Gm23891 snoRNA snoRNA MGP_CASTEiJ_T0013540.1 MGP_CASTEiJ_G0011703.1 mouse_genomes_project 3 24348053 24349218 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060559.1 MGP_CASTEiJ_G0026346.1 mouse_genomes_project 3 38438210 38455839 - MGP_CASTEiJ_P0060559 Slc25a31 protein_coding protein_coding MGP_CASTEiJ_T0062067.1 MGP_CASTEiJ_G0026654.1 mouse_genomes_project 3 91624180 91625462 + MGP_CASTEiJ_P0062067 Sprr2f protein_coding protein_coding MGP_CASTEiJ_T0060051.1 MGP_CASTEiJ_G0026250.1 mouse_genomes_project 3 12321220 12329625 + MGP_CASTEiJ_P0060051 Car2 protein_coding protein_coding MGP_CASTEiJ_T0060052.1 MGP_CASTEiJ_G0026250.1 mouse_genomes_project 3 12321375 12335255 + MGP_CASTEiJ_P0060052 Car2 protein_coding protein_coding MGP_CASTEiJ_T0060053.1 MGP_CASTEiJ_G0026250.1 mouse_genomes_project 3 12321586 12323509 + Car2 protein_coding retained_intron MGP_CASTEiJ_T0001149.1 MGP_CASTEiJ_G0001081.1 mouse_genomes_project 3 50171715 50174321 - TEC TEC MGP_CASTEiJ_T0062795.1 MGP_CASTEiJ_G0026848.1 mouse_genomes_project 3 102926801 102952401 + MGP_CASTEiJ_P0062795 Ampd1 protein_coding protein_coding MGP_CASTEiJ_T0062796.1 MGP_CASTEiJ_G0026848.1 mouse_genomes_project 3 102926809 102952395 + MGP_CASTEiJ_P0062796 Ampd1 protein_coding protein_coding MGP_CASTEiJ_T0062797.1 MGP_CASTEiJ_G0026848.1 mouse_genomes_project 3 102926840 102941052 + MGP_CASTEiJ_P0062797 Ampd1 protein_coding protein_coding MGP_CASTEiJ_T0062798.1 MGP_CASTEiJ_G0026848.1 mouse_genomes_project 3 102946665 102947688 + Ampd1 protein_coding retained_intron MGP_CASTEiJ_T0062799.1 MGP_CASTEiJ_G0026848.1 mouse_genomes_project 3 102947336 102952387 + MGP_CASTEiJ_P0062799 Ampd1 protein_coding protein_coding MGP_CASTEiJ_T0004244.1 MGP_CASTEiJ_G0003715.1 mouse_genomes_project 3 131176970 131188335 + Gm42697 antisense antisense MGP_CASTEiJ_T0102264.1 MGP_CASTEiJ_G0038989.1 mouse_genomes_project 3 58146467 58256561 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0062564.1 MGP_CASTEiJ_G0026792.1 mouse_genomes_project 3 96371226 96404338 - MGP_CASTEiJ_P0062564 Cd160 protein_coding protein_coding MGP_CASTEiJ_T0062565.1 MGP_CASTEiJ_G0026792.1 mouse_genomes_project 3 96371226 96404338 - MGP_CASTEiJ_P0062565 Cd160 protein_coding protein_coding MGP_CASTEiJ_T0062566.1 MGP_CASTEiJ_G0026792.1 mouse_genomes_project 3 96372618 96387831 - MGP_CASTEiJ_P0062566 Cd160 protein_coding protein_coding MGP_CASTEiJ_T0013505.1 MGP_CASTEiJ_G0011668.1 mouse_genomes_project 3 12241982 12242201 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099763.1 MGP_CASTEiJ_G0036676.1 mouse_genomes_project 3 158646972 158647076 - Gm23038 snRNA snRNA MGP_CASTEiJ_T0004161.1 MGP_CASTEiJ_G0003663.1 mouse_genomes_project 3 93806751 93818331 - Gm43401 antisense antisense MGP_CASTEiJ_T0004188.1 MGP_CASTEiJ_G0003681.1 mouse_genomes_project 3 102031207 102033500 + Gm16160 antisense antisense MGP_CASTEiJ_T0013848.1 MGP_CASTEiJ_G0012011.1 mouse_genomes_project 3 127563144 127563344 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064186.1 MGP_CASTEiJ_G0027128.1 mouse_genomes_project 3 148848635 148864008 - MGP_CASTEiJ_P0064186 Rpf1 protein_coding protein_coding MGP_CASTEiJ_T0064187.1 MGP_CASTEiJ_G0027128.1 mouse_genomes_project 3 148849027 148850915 - MGP_CASTEiJ_P0064187 Rpf1 protein_coding protein_coding MGP_CASTEiJ_T0064188.1 MGP_CASTEiJ_G0027128.1 mouse_genomes_project 3 148849106 148851183 - Rpf1 protein_coding retained_intron MGP_CASTEiJ_T0064189.1 MGP_CASTEiJ_G0027128.1 mouse_genomes_project 3 148850863 148863659 - Rpf1 protein_coding processed_transcript MGP_CASTEiJ_T0064190.1 MGP_CASTEiJ_G0027128.1 mouse_genomes_project 3 148853495 148863990 - MGP_CASTEiJ_P0064190 Rpf1 protein_coding protein_coding MGP_CASTEiJ_T0001169.1 MGP_CASTEiJ_G0001100.1 mouse_genomes_project 3 54529457 54531432 - TEC TEC MGP_CASTEiJ_T0101776.1 MGP_CASTEiJ_G0038559.1 mouse_genomes_project 3 94165058 94177990 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0013722.1 MGP_CASTEiJ_G0011885.1 mouse_genomes_project 3 89761958 89762478 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013611.1 MGP_CASTEiJ_G0011774.1 mouse_genomes_project 3 50763527 50763768 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099747.1 MGP_CASTEiJ_G0036660.1 mouse_genomes_project 3 123420114 123420270 + Gm25153 snRNA snRNA MGP_CASTEiJ_T0064444.1 MGP_CASTEiJ_G0027165.1 mouse_genomes_project 3 160481680 160569065 + MGP_CASTEiJ_P0064444 Ptger3 protein_coding protein_coding MGP_CASTEiJ_T0064445.1 MGP_CASTEiJ_G0027165.1 mouse_genomes_project 3 160481688 160525918 + Ptger3 protein_coding retained_intron MGP_CASTEiJ_T0064446.1 MGP_CASTEiJ_G0027165.1 mouse_genomes_project 3 160481688 160567933 + MGP_CASTEiJ_P0064446 Ptger3 protein_coding protein_coding MGP_CASTEiJ_T0007349.1 MGP_CASTEiJ_G0006034.1 mouse_genomes_project 3 49635394 49644433 + Gm5103 lincRNA lincRNA MGP_CASTEiJ_T0007350.1 MGP_CASTEiJ_G0006034.1 mouse_genomes_project 3 49635446 49644440 + Gm5103 lincRNA lincRNA MGP_CASTEiJ_T0098756.1 MGP_CASTEiJ_G0035687.1 mouse_genomes_project 3 61877860 61878002 + Gm22433 scaRNA scaRNA MGP_CASTEiJ_T0060314.1 MGP_CASTEiJ_G0026304.1 mouse_genomes_project 3 29959699 29989049 + MGP_CASTEiJ_P0060314 Pik3ca protein_coding protein_coding MGP_CASTEiJ_T0060315.1 MGP_CASTEiJ_G0026304.1 mouse_genomes_project 3 29987894 29989046 + Pik3ca protein_coding retained_intron MGP_CASTEiJ_T0010264.1 MGP_CASTEiJ_G0008452.1 mouse_genomes_project 3 128759527 128759596 + Mir302a miRNA miRNA MGP_CASTEiJ_T0098758.1 MGP_CASTEiJ_G0035689.1 mouse_genomes_project 3 88479458 88479586 + Gm25820 scaRNA scaRNA MGP_CASTEiJ_T0013670.1 MGP_CASTEiJ_G0011833.1 mouse_genomes_project 3 68926629 68927354 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099712.1 MGP_CASTEiJ_G0036625.1 mouse_genomes_project 3 85574505 85574567 - Gm24501 snRNA snRNA MGP_CASTEiJ_T0060148.1 MGP_CASTEiJ_G0026273.1 mouse_genomes_project 3 20976013 22003309 - MGP_CASTEiJ_P0060148 Naaladl2 protein_coding protein_coding MGP_CASTEiJ_T0060149.1 MGP_CASTEiJ_G0026273.1 mouse_genomes_project 3 20982656 21124429 - Naaladl2 protein_coding processed_transcript MGP_CASTEiJ_T0060150.1 MGP_CASTEiJ_G0026273.1 mouse_genomes_project 3 20983286 21153409 - Naaladl2 protein_coding processed_transcript MGP_CASTEiJ_T0060151.1 MGP_CASTEiJ_G0026273.1 mouse_genomes_project 3 21748136 22371654 - Naaladl2 protein_coding retained_intron MGP_CASTEiJ_T0001329.1 MGP_CASTEiJ_G0001259.1 mouse_genomes_project 3 155049646 155051055 - TEC TEC MGP_CASTEiJ_T0060800.1 MGP_CASTEiJ_G0026388.1 mouse_genomes_project 3 53601929 53628407 + MGP_CASTEiJ_P0060800 Spg20 protein_coding protein_coding MGP_CASTEiJ_T0060801.1 MGP_CASTEiJ_G0026388.1 mouse_genomes_project 3 53601934 53620239 + Spg20 protein_coding retained_intron MGP_CASTEiJ_T0060802.1 MGP_CASTEiJ_G0026388.1 mouse_genomes_project 3 53601950 53628395 + MGP_CASTEiJ_P0060802 Spg20 protein_coding protein_coding MGP_CASTEiJ_T0060803.1 MGP_CASTEiJ_G0026388.1 mouse_genomes_project 3 53601959 53604106 + Spg20 protein_coding retained_intron MGP_CASTEiJ_T0060804.1 MGP_CASTEiJ_G0026388.1 mouse_genomes_project 3 53601987 53628401 + MGP_CASTEiJ_P0060804 Spg20 protein_coding protein_coding MGP_CASTEiJ_T0060805.1 MGP_CASTEiJ_G0026388.1 mouse_genomes_project 3 53602208 53620607 + MGP_CASTEiJ_P0060805 Spg20 protein_coding protein_coding MGP_CASTEiJ_T0060806.1 MGP_CASTEiJ_G0026388.1 mouse_genomes_project 3 53602417 53607106 + MGP_CASTEiJ_P0060806 Spg20 protein_coding protein_coding MGP_CASTEiJ_T0060807.1 MGP_CASTEiJ_G0026388.1 mouse_genomes_project 3 53606014 53607178 + MGP_CASTEiJ_P0060807 Spg20 protein_coding protein_coding MGP_CASTEiJ_T0001132.1 MGP_CASTEiJ_G0001065.1 mouse_genomes_project 3 49095429 49099247 - TEC TEC MGP_CASTEiJ_T0007408.1 MGP_CASTEiJ_G0006081.1 mouse_genomes_project 3 85130704 85139849 - Gm42812 lincRNA lincRNA MGP_CASTEiJ_T0004285.1 MGP_CASTEiJ_G0003745.1 mouse_genomes_project 3 160867619 160869283 + 1810013D15Rik antisense antisense MGP_CASTEiJ_T0004286.1 MGP_CASTEiJ_G0003745.1 mouse_genomes_project 3 160867621 160869015 + 1810013D15Rik antisense antisense MGP_CASTEiJ_T0004287.1 MGP_CASTEiJ_G0003745.1 mouse_genomes_project 3 160867881 160880432 + 1810013D15Rik antisense antisense MGP_CASTEiJ_T0061382.1 MGP_CASTEiJ_G0026522.1 mouse_genomes_project 3 86731960 86846651 - MGP_CASTEiJ_P0061382 Kirrel protein_coding unknown_likely_coding MGP_CASTEiJ_T0061383.1 MGP_CASTEiJ_G0026522.1 mouse_genomes_project 3 86741516 86846795 - MGP_CASTEiJ_P0061383 Kirrel protein_coding protein_coding MGP_CASTEiJ_T0061384.1 MGP_CASTEiJ_G0026522.1 mouse_genomes_project 3 86741524 86846842 - MGP_CASTEiJ_P0061384 Kirrel protein_coding protein_coding MGP_CASTEiJ_T0061385.1 MGP_CASTEiJ_G0026522.1 mouse_genomes_project 3 86747528 86846645 - MGP_CASTEiJ_P0061385 Kirrel protein_coding protein_coding MGP_CASTEiJ_T0013706.1 MGP_CASTEiJ_G0011869.1 mouse_genomes_project 3 83176982 83178274 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098376.1 MGP_CASTEiJ_G0035307.1 mouse_genomes_project 3 89252277 89253548 + pseudogene pseudogene MGP_CASTEiJ_T0001113.1 MGP_CASTEiJ_G0001046.1 mouse_genomes_project 3 36190146 36191327 - TEC TEC MGP_CASTEiJ_T0098928.1 MGP_CASTEiJ_G0035852.1 mouse_genomes_project 3 105802468 105805965 - Gm43330 sense_intronic sense_intronic MGP_CASTEiJ_T0001231.1 MGP_CASTEiJ_G0001162.1 mouse_genomes_project 3 108226861 108227547 + TEC TEC MGP_CASTEiJ_T0001121.1 MGP_CASTEiJ_G0001054.1 mouse_genomes_project 3 42530798 42534046 + TEC TEC MGP_CASTEiJ_T0064152.1 MGP_CASTEiJ_G0027119.1 mouse_genomes_project 3 148296167 148303459 + protein_coding processed_transcript MGP_CASTEiJ_T0062761.1 MGP_CASTEiJ_G0026843.1 mouse_genomes_project 3 102673537 102781473 - MGP_CASTEiJ_P0062761 protein_coding protein_coding MGP_CASTEiJ_T0062762.1 MGP_CASTEiJ_G0026843.1 mouse_genomes_project 3 102673537 102781473 - MGP_CASTEiJ_P0062762 protein_coding protein_coding MGP_CASTEiJ_T0062763.1 MGP_CASTEiJ_G0026843.1 mouse_genomes_project 3 102764644 102781463 - MGP_CASTEiJ_P0062763 protein_coding protein_coding MGP_CASTEiJ_T0004220.1 MGP_CASTEiJ_G0003696.1 mouse_genomes_project 3 109438352 109440423 + Gm43221 antisense antisense MGP_CASTEiJ_T0001134.1 MGP_CASTEiJ_G0001067.1 mouse_genomes_project 3 49192435 49193709 - TEC TEC MGP_CASTEiJ_T0007527.1 MGP_CASTEiJ_G0006172.1 mouse_genomes_project 3 136064792 136244865 - lincRNA lincRNA MGP_CASTEiJ_T0001116.1 MGP_CASTEiJ_G0001049.1 mouse_genomes_project 3 38764483 38765407 - TEC TEC MGP_CASTEiJ_T0013675.1 MGP_CASTEiJ_G0011838.1 mouse_genomes_project 3 70629132 70633637 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061250.1 MGP_CASTEiJ_G0026489.1 mouse_genomes_project 3 81455831 81500044 - MGP_CASTEiJ_P0061250 Gucy1b3 protein_coding protein_coding MGP_CASTEiJ_T0061251.1 MGP_CASTEiJ_G0026489.1 mouse_genomes_project 3 81458154 81459165 - Gucy1b3 protein_coding retained_intron MGP_CASTEiJ_T0061252.1 MGP_CASTEiJ_G0026489.1 mouse_genomes_project 3 81474951 81500143 - Gucy1b3 protein_coding processed_transcript MGP_CASTEiJ_T0060794.1 MGP_CASTEiJ_G0026387.1 mouse_genomes_project 3 53529438 53534607 - MGP_CASTEiJ_P0060794 Ccna1 protein_coding protein_coding MGP_CASTEiJ_T0060795.1 MGP_CASTEiJ_G0026387.1 mouse_genomes_project 3 53529444 53539014 - MGP_CASTEiJ_P0060795 Ccna1 protein_coding protein_coding MGP_CASTEiJ_T0060796.1 MGP_CASTEiJ_G0026387.1 mouse_genomes_project 3 53529446 53539001 - MGP_CASTEiJ_P0060796 Ccna1 protein_coding protein_coding MGP_CASTEiJ_T0060797.1 MGP_CASTEiJ_G0026387.1 mouse_genomes_project 3 53529447 53539460 - MGP_CASTEiJ_P0060797 Ccna1 protein_coding protein_coding MGP_CASTEiJ_T0060798.1 MGP_CASTEiJ_G0026387.1 mouse_genomes_project 3 53534554 53539441 - MGP_CASTEiJ_P0060798 Ccna1 protein_coding protein_coding MGP_CASTEiJ_T0060799.1 MGP_CASTEiJ_G0026387.1 mouse_genomes_project 3 53534948 53538996 - MGP_CASTEiJ_P0060799 Ccna1 protein_coding protein_coding MGP_CASTEiJ_T0060228.1 MGP_CASTEiJ_G0026287.1 mouse_genomes_project 3 26503404 26570843 + MGP_CASTEiJ_P0060228 Egfem1 protein_coding protein_coding MGP_CASTEiJ_T0060229.1 MGP_CASTEiJ_G0026287.1 mouse_genomes_project 3 26503681 26998366 + MGP_CASTEiJ_P0060229 Egfem1 protein_coding protein_coding MGP_CASTEiJ_T0060230.1 MGP_CASTEiJ_G0026287.1 mouse_genomes_project 3 26503944 27095946 + Egfem1 protein_coding retained_intron MGP_CASTEiJ_T0060231.1 MGP_CASTEiJ_G0026287.1 mouse_genomes_project 3 26504100 27111825 + MGP_CASTEiJ_P0060231 Egfem1 protein_coding protein_coding MGP_CASTEiJ_T0060232.1 MGP_CASTEiJ_G0026287.1 mouse_genomes_project 3 26504138 27111127 + MGP_CASTEiJ_P0060232 Egfem1 protein_coding protein_coding MGP_CASTEiJ_T0060233.1 MGP_CASTEiJ_G0026287.1 mouse_genomes_project 3 26504217 26588929 + MGP_CASTEiJ_P0060233 Egfem1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0060234.1 MGP_CASTEiJ_G0026287.1 mouse_genomes_project 3 26883139 27071630 + Egfem1 protein_coding processed_transcript MGP_CASTEiJ_T0060235.1 MGP_CASTEiJ_G0026287.1 mouse_genomes_project 3 26937509 27111665 + MGP_CASTEiJ_P0060235 Egfem1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0060236.1 MGP_CASTEiJ_G0026287.1 mouse_genomes_project 3 26937534 27095053 + MGP_CASTEiJ_P0060236 Egfem1 protein_coding protein_coding MGP_CASTEiJ_T0013864.1 MGP_CASTEiJ_G0012027.1 mouse_genomes_project 3 135166814 135167089 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061980.1 MGP_CASTEiJ_G0026623.1 mouse_genomes_project 3 90375173 90381712 - Slc27a3 protein_coding retained_intron MGP_CASTEiJ_T0061981.1 MGP_CASTEiJ_G0026623.1 mouse_genomes_project 3 90375173 90381701 - MGP_CASTEiJ_P0061981 Slc27a3 protein_coding protein_coding MGP_CASTEiJ_T0061982.1 MGP_CASTEiJ_G0026623.1 mouse_genomes_project 3 90375175 90381438 - MGP_CASTEiJ_P0061982 Slc27a3 protein_coding protein_coding MGP_CASTEiJ_T0061983.1 MGP_CASTEiJ_G0026623.1 mouse_genomes_project 3 90379399 90380755 - Slc27a3 protein_coding retained_intron MGP_CASTEiJ_T0061984.1 MGP_CASTEiJ_G0026623.1 mouse_genomes_project 3 90380137 90381404 - Slc27a3 protein_coding processed_transcript MGP_CASTEiJ_T0100985.1 MGP_CASTEiJ_G0037898.1 mouse_genomes_project 3 103274477 103274580 + Gm25009 snoRNA snoRNA MGP_CASTEiJ_T0063470.1 MGP_CASTEiJ_G0026995.1 mouse_genomes_project 3 123213168 123224077 + MGP_CASTEiJ_P0063470 Dnttip2 protein_coding protein_coding MGP_CASTEiJ_T0063471.1 MGP_CASTEiJ_G0026995.1 mouse_genomes_project 3 123213198 123214993 + Dnttip2 protein_coding processed_transcript MGP_CASTEiJ_T0063472.1 MGP_CASTEiJ_G0026995.1 mouse_genomes_project 3 123214799 123224055 + Dnttip2 protein_coding processed_transcript MGP_CASTEiJ_T0063473.1 MGP_CASTEiJ_G0026995.1 mouse_genomes_project 3 123215552 123218411 + Dnttip2 protein_coding retained_intron MGP_CASTEiJ_T0063474.1 MGP_CASTEiJ_G0026995.1 mouse_genomes_project 3 123219379 123223904 + Dnttip2 protein_coding retained_intron MGP_CASTEiJ_T0001108.1 MGP_CASTEiJ_G0001041.1 mouse_genomes_project 3 35392008 35395403 + TEC TEC MGP_CASTEiJ_T0013458.1 MGP_CASTEiJ_G0011621.1 mouse_genomes_project 3 390298 391049 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007354.1 MGP_CASTEiJ_G0006038.1 mouse_genomes_project 3 50856719 50891442 + Gm30173 lincRNA lincRNA MGP_CASTEiJ_T0061823.1 MGP_CASTEiJ_G0026598.1 mouse_genomes_project 3 89303449 89316750 - MGP_CASTEiJ_P0061823 Flad1 protein_coding protein_coding MGP_CASTEiJ_T0061824.1 MGP_CASTEiJ_G0026598.1 mouse_genomes_project 3 89304414 89316743 - MGP_CASTEiJ_P0061824 Flad1 protein_coding protein_coding MGP_CASTEiJ_T0061825.1 MGP_CASTEiJ_G0026598.1 mouse_genomes_project 3 89305112 89316749 - MGP_CASTEiJ_P0061825 Flad1 protein_coding protein_coding MGP_CASTEiJ_T0061826.1 MGP_CASTEiJ_G0026598.1 mouse_genomes_project 3 89313612 89316661 - MGP_CASTEiJ_P0061826 Flad1 protein_coding protein_coding MGP_CASTEiJ_T0061827.1 MGP_CASTEiJ_G0026598.1 mouse_genomes_project 3 89313837 89316750 - MGP_CASTEiJ_P0061827 Flad1 protein_coding protein_coding MGP_CASTEiJ_T0007286.1 MGP_CASTEiJ_G0005983.1 mouse_genomes_project 3 15556508 15666336 - lincRNA lincRNA MGP_CASTEiJ_T0007405.1 MGP_CASTEiJ_G0006078.1 mouse_genomes_project 3 83032938 83056187 - 1700028M03Rik lincRNA lincRNA MGP_CASTEiJ_T0098907.1 MGP_CASTEiJ_G0035831.1 mouse_genomes_project 3 103983001 103984142 - Gm42696 sense_intronic sense_intronic MGP_CASTEiJ_T0013514.1 MGP_CASTEiJ_G0011677.1 mouse_genomes_project 3 14907674 14908014 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060925.1 MGP_CASTEiJ_G0026416.1 mouse_genomes_project 3 58371889 58393292 + MGP_CASTEiJ_P0060925 Gm5538 protein_coding protein_coding MGP_CASTEiJ_T0064142.1 MGP_CASTEiJ_G0027117.1 mouse_genomes_project 3 148212851 148215230 + Bcl10 protein_coding retained_intron MGP_CASTEiJ_T0064143.1 MGP_CASTEiJ_G0027117.1 mouse_genomes_project 3 148214306 148224624 + MGP_CASTEiJ_P0064143 Bcl10 protein_coding protein_coding MGP_CASTEiJ_T0064144.1 MGP_CASTEiJ_G0027117.1 mouse_genomes_project 3 148214401 148218028 + Bcl10 protein_coding processed_transcript MGP_CASTEiJ_T0001276.1 MGP_CASTEiJ_G0001207.1 mouse_genomes_project 3 128135795 128136695 - TEC TEC MGP_CASTEiJ_T0013620.1 MGP_CASTEiJ_G0011783.1 mouse_genomes_project 3 55785232 55785864 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099052.1 MGP_CASTEiJ_G0035966.1 mouse_genomes_project 3 157468414 157491851 + Gm38139 sense_overlapping sense_overlapping MGP_CASTEiJ_T0001255.1 MGP_CASTEiJ_G0001186.1 mouse_genomes_project 3 122684769 122687200 - TEC TEC MGP_CASTEiJ_T0004231.1 MGP_CASTEiJ_G0003705.1 mouse_genomes_project 3 123525907 123535710 + Gm43569 antisense antisense MGP_CASTEiJ_T0007295.1 MGP_CASTEiJ_G0005991.1 mouse_genomes_project 3 20596591 20666099 + 4930412E21Rik lincRNA lincRNA MGP_CASTEiJ_T0013578.1 MGP_CASTEiJ_G0011741.1 mouse_genomes_project 3 38578027 38578475 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062896.1 MGP_CASTEiJ_G0026868.1 mouse_genomes_project 3 104753569 104759250 + MGP_CASTEiJ_P0062896 Rhoc protein_coding protein_coding MGP_CASTEiJ_T0062897.1 MGP_CASTEiJ_G0026868.1 mouse_genomes_project 3 104754019 104757757 + MGP_CASTEiJ_P0062897 Rhoc protein_coding protein_coding MGP_CASTEiJ_T0062898.1 MGP_CASTEiJ_G0026868.1 mouse_genomes_project 3 104756762 104757660 + Rhoc protein_coding retained_intron MGP_CASTEiJ_T0004235.1 MGP_CASTEiJ_G0003708.1 mouse_genomes_project 3 125427806 125429564 + Gm42823 antisense antisense MGP_CASTEiJ_T0062131.1 MGP_CASTEiJ_G0026701.1 mouse_genomes_project 3 93786276 93813317 + MGP_CASTEiJ_P0062131 Rorc protein_coding protein_coding MGP_CASTEiJ_T0062132.1 MGP_CASTEiJ_G0026701.1 mouse_genomes_project 3 93790898 93813753 + MGP_CASTEiJ_P0062132 Rorc protein_coding protein_coding MGP_CASTEiJ_T0062133.1 MGP_CASTEiJ_G0026701.1 mouse_genomes_project 3 93790926 93813123 + Rorc protein_coding retained_intron MGP_CASTEiJ_T0062134.1 MGP_CASTEiJ_G0026701.1 mouse_genomes_project 3 93790982 93813125 + MGP_CASTEiJ_P0062134 Rorc protein_coding protein_coding MGP_CASTEiJ_T0004099.1 MGP_CASTEiJ_G0003615.1 mouse_genomes_project 3 33866779 33869225 + Gm43255 antisense antisense MGP_CASTEiJ_T0004079.1 MGP_CASTEiJ_G0003603.1 mouse_genomes_project 3 26204600 26214391 - Gm33051 antisense antisense MGP_CASTEiJ_T0007471.1 MGP_CASTEiJ_G0006126.1 mouse_genomes_project 3 108168813 108182000 - Gm36211 lincRNA lincRNA MGP_CASTEiJ_T0013466.1 MGP_CASTEiJ_G0011629.1 mouse_genomes_project 3 1535019 1535449 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001202.1 MGP_CASTEiJ_G0001133.1 mouse_genomes_project 3 83572810 83577256 - TEC TEC MGP_CASTEiJ_T0099698.1 MGP_CASTEiJ_G0036611.1 mouse_genomes_project 3 56853637 56853744 - Gm26166 snRNA snRNA MGP_CASTEiJ_T0007441.1 MGP_CASTEiJ_G0006101.1 mouse_genomes_project 3 95945898 95946763 - 4930477E14Rik lincRNA lincRNA MGP_CASTEiJ_T0004260.1 MGP_CASTEiJ_G0003726.1 mouse_genomes_project 3 139870393 139881231 + Gm43691 antisense antisense MGP_CASTEiJ_T0010215.1 MGP_CASTEiJ_G0008403.1 mouse_genomes_project 3 24920348 24920444 - Mir3092 miRNA miRNA MGP_CASTEiJ_T0013633.1 MGP_CASTEiJ_G0011796.1 mouse_genomes_project 3 58365565 58365679 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099756.1 MGP_CASTEiJ_G0036669.1 mouse_genomes_project 3 139665578 139665677 - Gm25920 snRNA snRNA MGP_CASTEiJ_T0007270.1 MGP_CASTEiJ_G0005976.1 mouse_genomes_project 3 10913589 10915726 - Gm2464 lincRNA lincRNA MGP_CASTEiJ_T0013518.1 MGP_CASTEiJ_G0011681.1 mouse_genomes_project 3 15777555 15778759 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013600.1 MGP_CASTEiJ_G0011763.1 mouse_genomes_project 3 47863208 47863743 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100950.1 MGP_CASTEiJ_G0037863.1 mouse_genomes_project 3 37609339 37609424 - Gm23831 snoRNA snoRNA MGP_CASTEiJ_T0060010.1 MGP_CASTEiJ_G0026238.1 mouse_genomes_project 3 7696826 7700748 - MGP_CASTEiJ_P0060010 Slc10a5 protein_coding protein_coding MGP_CASTEiJ_T0063441.1 MGP_CASTEiJ_G0026991.1 mouse_genomes_project 3 122653058 122715038 - MGP_CASTEiJ_P0063441 Abcd3 protein_coding protein_coding MGP_CASTEiJ_T0063442.1 MGP_CASTEiJ_G0026991.1 mouse_genomes_project 3 122653191 122715174 - MGP_CASTEiJ_P0063442 Abcd3 protein_coding protein_coding MGP_CASTEiJ_T0063443.1 MGP_CASTEiJ_G0026991.1 mouse_genomes_project 3 122654038 122715038 - MGP_CASTEiJ_P0063443 Abcd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063444.1 MGP_CASTEiJ_G0026991.1 mouse_genomes_project 3 122660500 122663157 - Abcd3 protein_coding retained_intron MGP_CASTEiJ_T0063445.1 MGP_CASTEiJ_G0026991.1 mouse_genomes_project 3 122683283 122714781 - Abcd3 protein_coding processed_transcript MGP_CASTEiJ_T0063446.1 MGP_CASTEiJ_G0026991.1 mouse_genomes_project 3 122694823 122715069 - Abcd3 protein_coding retained_intron MGP_CASTEiJ_T0063550.1 MGP_CASTEiJ_G0027011.1 mouse_genomes_project 3 126458386 126818535 + MGP_CASTEiJ_P0063550 Ndst4 protein_coding protein_coding MGP_CASTEiJ_T0063551.1 MGP_CASTEiJ_G0027011.1 mouse_genomes_project 3 126458400 126767257 + Ndst4 protein_coding retained_intron MGP_CASTEiJ_T0063552.1 MGP_CASTEiJ_G0027011.1 mouse_genomes_project 3 126634672 126688001 + MGP_CASTEiJ_P0063552 Ndst4 protein_coding protein_coding MGP_CASTEiJ_T0063553.1 MGP_CASTEiJ_G0027011.1 mouse_genomes_project 3 126761542 126816725 + MGP_CASTEiJ_P0063553 Ndst4 protein_coding protein_coding MGP_CASTEiJ_T0063554.1 MGP_CASTEiJ_G0027011.1 mouse_genomes_project 3 126761552 126772731 + Ndst4 protein_coding processed_transcript MGP_CASTEiJ_T0063555.1 MGP_CASTEiJ_G0027011.1 mouse_genomes_project 3 126795240 126809904 + MGP_CASTEiJ_P0063555 Ndst4 protein_coding protein_coding MGP_CASTEiJ_T0062723.1 MGP_CASTEiJ_G0026835.1 mouse_genomes_project 3 101659283 101724466 - MGP_CASTEiJ_P0062723 Slc22a15 protein_coding protein_coding MGP_CASTEiJ_T0062724.1 MGP_CASTEiJ_G0026835.1 mouse_genomes_project 3 101662420 101693896 - Slc22a15 protein_coding processed_transcript MGP_CASTEiJ_T0062725.1 MGP_CASTEiJ_G0026835.1 mouse_genomes_project 3 101662420 101724523 - MGP_CASTEiJ_P0062725 Slc22a15 protein_coding protein_coding MGP_CASTEiJ_T0062726.1 MGP_CASTEiJ_G0026835.1 mouse_genomes_project 3 101665957 101681223 - Slc22a15 protein_coding retained_intron MGP_CASTEiJ_T0062727.1 MGP_CASTEiJ_G0026835.1 mouse_genomes_project 3 101667196 101724452 - MGP_CASTEiJ_P0062727 Slc22a15 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062728.1 MGP_CASTEiJ_G0026835.1 mouse_genomes_project 3 101674970 101679949 - Slc22a15 protein_coding retained_intron MGP_CASTEiJ_T0062729.1 MGP_CASTEiJ_G0026835.1 mouse_genomes_project 3 101721235 101724527 - Slc22a15 protein_coding processed_transcript MGP_CASTEiJ_T0013508.1 MGP_CASTEiJ_G0011671.1 mouse_genomes_project 3 13159516 13160606 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004257.1 MGP_CASTEiJ_G0003724.1 mouse_genomes_project 3 139612209 139614021 - Gm43403 antisense antisense MGP_CASTEiJ_T0004258.1 MGP_CASTEiJ_G0003724.1 mouse_genomes_project 3 139613335 139613831 - Gm43403 antisense antisense MGP_CASTEiJ_T0060064.1 MGP_CASTEiJ_G0026256.1 mouse_genomes_project 3 15269231 15272574 + MGP_CASTEiJ_P0060064 Bhlhe22 protein_coding protein_coding MGP_CASTEiJ_T0007514.1 MGP_CASTEiJ_G0006159.1 mouse_genomes_project 3 132387966 132389477 + Gm36520 lincRNA lincRNA MGP_CASTEiJ_T0062800.1 MGP_CASTEiJ_G0026849.1 mouse_genomes_project 3 102955284 103029566 + MGP_CASTEiJ_P0062800 Dennd2c protein_coding protein_coding MGP_CASTEiJ_T0062801.1 MGP_CASTEiJ_G0026849.1 mouse_genomes_project 3 102955340 103014241 + Dennd2c protein_coding retained_intron MGP_CASTEiJ_T0062802.1 MGP_CASTEiJ_G0026849.1 mouse_genomes_project 3 102985126 103029535 + MGP_CASTEiJ_P0062802 Dennd2c protein_coding protein_coding MGP_CASTEiJ_T0062803.1 MGP_CASTEiJ_G0026849.1 mouse_genomes_project 3 102996764 103028462 + Dennd2c protein_coding processed_transcript MGP_CASTEiJ_T0062804.1 MGP_CASTEiJ_G0026849.1 mouse_genomes_project 3 102997628 103029528 + Dennd2c protein_coding retained_intron MGP_CASTEiJ_T0062805.1 MGP_CASTEiJ_G0026849.1 mouse_genomes_project 3 103006000 103016102 + Dennd2c protein_coding retained_intron MGP_CASTEiJ_T0061140.1 MGP_CASTEiJ_G0026465.1 mouse_genomes_project 3 72031449 72040783 - MGP_CASTEiJ_P0061140 Slitrk3 protein_coding protein_coding MGP_CASTEiJ_T0061141.1 MGP_CASTEiJ_G0026465.1 mouse_genomes_project 3 72032280 72041653 - MGP_CASTEiJ_P0061141 Slitrk3 protein_coding protein_coding MGP_CASTEiJ_T0007494.1 MGP_CASTEiJ_G0006143.1 mouse_genomes_project 3 122597244 122605724 - Gm43608 lincRNA lincRNA MGP_CASTEiJ_T0007504.1 MGP_CASTEiJ_G0006151.1 mouse_genomes_project 3 129170106 129210451 + 9830132P13Rik lincRNA lincRNA MGP_CASTEiJ_T0062496.1 MGP_CASTEiJ_G0026767.1 mouse_genomes_project 3 95812407 95812935 + MGP_CASTEiJ_P0062496 Hist2h2aa2 protein_coding protein_coding MGP_CASTEiJ_T0013719.1 MGP_CASTEiJ_G0011882.1 mouse_genomes_project 3 88025947 88026094 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061289.1 MGP_CASTEiJ_G0026501.1 mouse_genomes_project 3 83335370 83340852 - MGP_CASTEiJ_P0061289 Tlr2 protein_coding protein_coding MGP_CASTEiJ_T0013782.1 MGP_CASTEiJ_G0011945.1 mouse_genomes_project 3 104582820 104583162 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004158.1 MGP_CASTEiJ_G0003660.1 mouse_genomes_project 3 90452377 90458367 + Gm16048 antisense antisense MGP_CASTEiJ_T0062844.1 MGP_CASTEiJ_G0026857.1 mouse_genomes_project 3 103720207 103734434 + MGP_CASTEiJ_P0062844 protein_coding unknown_likely_coding MGP_CASTEiJ_T0062846.1 MGP_CASTEiJ_G0026857.1 mouse_genomes_project 3 103720256 103734235 + MGP_CASTEiJ_P0062846 protein_coding protein_coding MGP_CASTEiJ_T0062847.1 MGP_CASTEiJ_G0026857.1 mouse_genomes_project 3 103720263 103734430 + MGP_CASTEiJ_P0062847 protein_coding protein_coding MGP_CASTEiJ_T0062848.1 MGP_CASTEiJ_G0026857.1 mouse_genomes_project 3 103720510 103734168 + MGP_CASTEiJ_P0062848 protein_coding protein_coding MGP_CASTEiJ_T0062849.1 MGP_CASTEiJ_G0026857.1 mouse_genomes_project 3 103720538 103725524 + protein_coding processed_transcript MGP_CASTEiJ_T0062850.1 MGP_CASTEiJ_G0026857.1 mouse_genomes_project 3 103725713 103733091 + MGP_CASTEiJ_P0062850 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062243.1 MGP_CASTEiJ_G0026719.1 mouse_genomes_project 3 94472362 94482702 - MGP_CASTEiJ_P0062243 Psmd4 protein_coding protein_coding MGP_CASTEiJ_T0062244.1 MGP_CASTEiJ_G0026719.1 mouse_genomes_project 3 94472365 94482640 - MGP_CASTEiJ_P0062244 Psmd4 protein_coding protein_coding MGP_CASTEiJ_T0062245.1 MGP_CASTEiJ_G0026719.1 mouse_genomes_project 3 94472372 94474924 - MGP_CASTEiJ_P0062245 Psmd4 protein_coding protein_coding MGP_CASTEiJ_T0062246.1 MGP_CASTEiJ_G0026719.1 mouse_genomes_project 3 94472373 94482636 - Psmd4 protein_coding retained_intron MGP_CASTEiJ_T0062247.1 MGP_CASTEiJ_G0026719.1 mouse_genomes_project 3 94472373 94482631 - MGP_CASTEiJ_P0062247 Psmd4 protein_coding protein_coding MGP_CASTEiJ_T0062248.1 MGP_CASTEiJ_G0026719.1 mouse_genomes_project 3 94472591 94482633 - Psmd4 protein_coding retained_intron MGP_CASTEiJ_T0062249.1 MGP_CASTEiJ_G0026719.1 mouse_genomes_project 3 94472596 94473585 - Psmd4 protein_coding retained_intron MGP_CASTEiJ_T0062250.1 MGP_CASTEiJ_G0026719.1 mouse_genomes_project 3 94475479 94482638 - Psmd4 protein_coding processed_transcript MGP_CASTEiJ_T0011218.1 MGP_CASTEiJ_G0009406.1 mouse_genomes_project 3 107749726 107750059 - Gm24383 misc_RNA misc_RNA MGP_CASTEiJ_T0013525.1 MGP_CASTEiJ_G0011688.1 mouse_genomes_project 3 17628474 17629439 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060152.1 MGP_CASTEiJ_G0026274.1 mouse_genomes_project 3 22648648 23635035 - MGP_CASTEiJ_P0060152 Nlgn1 protein_coding protein_coding MGP_CASTEiJ_T0060153.1 MGP_CASTEiJ_G0026274.1 mouse_genomes_project 3 22654231 23407781 - MGP_CASTEiJ_P0060153 Nlgn1 protein_coding protein_coding MGP_CASTEiJ_T0060154.1 MGP_CASTEiJ_G0026274.1 mouse_genomes_project 3 22654231 23407781 - MGP_CASTEiJ_P0060154 Nlgn1 protein_coding protein_coding MGP_CASTEiJ_T0060155.1 MGP_CASTEiJ_G0026274.1 mouse_genomes_project 3 22655854 23429234 - MGP_CASTEiJ_P0060155 Nlgn1 protein_coding protein_coding MGP_CASTEiJ_T0060156.1 MGP_CASTEiJ_G0026274.1 mouse_genomes_project 3 23405716 23634445 - Nlgn1 protein_coding retained_intron MGP_CASTEiJ_T0098915.1 MGP_CASTEiJ_G0035839.1 mouse_genomes_project 3 104112651 104115081 - Gm43260 sense_intronic sense_intronic MGP_CASTEiJ_T0017271.1 MGP_CASTEiJ_G0014842.1 mouse_genomes_project 3 137487366 137498742 - processed_transcript macro_lncRNA MGP_CASTEiJ_T0017272.1 MGP_CASTEiJ_G0014842.1 mouse_genomes_project 3 137487468 137498742 - processed_transcript antisense MGP_CASTEiJ_T0013912.1 MGP_CASTEiJ_G0012075.1 mouse_genomes_project 3 151065167 151065684 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001206.1 MGP_CASTEiJ_G0001137.1 mouse_genomes_project 3 87755375 87757641 + TEC TEC MGP_CASTEiJ_T0010261.1 MGP_CASTEiJ_G0008449.1 mouse_genomes_project 3 123500298 123500355 - Mir7657 miRNA miRNA MGP_CASTEiJ_T0063234.1 MGP_CASTEiJ_G0026951.1 mouse_genomes_project 3 109574415 109598972 + MGP_CASTEiJ_P0063234 Slc25a24 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063235.1 MGP_CASTEiJ_G0026951.1 mouse_genomes_project 3 109574429 109613467 + MGP_CASTEiJ_P0063235 Slc25a24 protein_coding protein_coding MGP_CASTEiJ_T0063236.1 MGP_CASTEiJ_G0026951.1 mouse_genomes_project 3 109574442 109603520 + MGP_CASTEiJ_P0063236 Slc25a24 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0007477.1 MGP_CASTEiJ_G0006132.1 mouse_genomes_project 3 116239223 116240805 + Gm9889 lincRNA lincRNA MGP_CASTEiJ_T0007478.1 MGP_CASTEiJ_G0006132.1 mouse_genomes_project 3 116239223 116240804 + Gm9889 lincRNA pseudogene MGP_CASTEiJ_T0060054.1 MGP_CASTEiJ_G0026251.1 mouse_genomes_project 3 12740000 12769383 - MGP_CASTEiJ_P0060054 Gm9733 protein_coding protein_coding MGP_CASTEiJ_T0013478.1 MGP_CASTEiJ_G0011641.1 mouse_genomes_project 3 5692996 5693805 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100952.1 MGP_CASTEiJ_G0037865.1 mouse_genomes_project 3 44256238 44256370 + Gm26081 snoRNA snoRNA MGP_CASTEiJ_T0013677.1 MGP_CASTEiJ_G0011840.1 mouse_genomes_project 3 70871124 70871283 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060065.1 MGP_CASTEiJ_G0026257.1 mouse_genomes_project 3 15287770 15459853 - MGP_CASTEiJ_P0060065 Cyp7b1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0013604.1 MGP_CASTEiJ_G0011767.1 mouse_genomes_project 3 48432092 48432324 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007401.1 MGP_CASTEiJ_G0006075.1 mouse_genomes_project 3 82399231 82478347 - Gm30097 lincRNA lincRNA MGP_CASTEiJ_T0007402.1 MGP_CASTEiJ_G0006075.1 mouse_genomes_project 3 82399333 82465541 - Gm30097 lincRNA lincRNA MGP_CASTEiJ_T0001314.1 MGP_CASTEiJ_G0001244.1 mouse_genomes_project 3 138475586 138476588 - TEC TEC MGP_CASTEiJ_T0063403.1 MGP_CASTEiJ_G0026984.1 mouse_genomes_project 3 122010005 122026136 - MGP_CASTEiJ_P0063403 Rwdd3 protein_coding protein_coding MGP_CASTEiJ_T0063404.1 MGP_CASTEiJ_G0026984.1 mouse_genomes_project 3 122010007 122011431 - Rwdd3 protein_coding retained_intron MGP_CASTEiJ_T0063405.1 MGP_CASTEiJ_G0026984.1 mouse_genomes_project 3 122010453 122013476 - MGP_CASTEiJ_P0063405 Rwdd3 protein_coding protein_coding MGP_CASTEiJ_T0063406.1 MGP_CASTEiJ_G0026984.1 mouse_genomes_project 3 122010456 122026129 - MGP_CASTEiJ_P0063406 Rwdd3 protein_coding protein_coding MGP_CASTEiJ_T0063407.1 MGP_CASTEiJ_G0026984.1 mouse_genomes_project 3 122010475 122026135 - MGP_CASTEiJ_P0063407 Rwdd3 protein_coding protein_coding MGP_CASTEiJ_T0063408.1 MGP_CASTEiJ_G0026984.1 mouse_genomes_project 3 122010549 122026135 - MGP_CASTEiJ_P0063408 Rwdd3 protein_coding protein_coding MGP_CASTEiJ_T0063409.1 MGP_CASTEiJ_G0026984.1 mouse_genomes_project 3 122010888 122026136 - MGP_CASTEiJ_P0063409 Rwdd3 protein_coding protein_coding MGP_CASTEiJ_T0063410.1 MGP_CASTEiJ_G0026984.1 mouse_genomes_project 3 122012603 122026136 - Rwdd3 protein_coding retained_intron MGP_CASTEiJ_T0063411.1 MGP_CASTEiJ_G0026984.1 mouse_genomes_project 3 122023608 122026135 - Rwdd3 protein_coding retained_intron MGP_CASTEiJ_T0013584.1 MGP_CASTEiJ_G0011747.1 mouse_genomes_project 3 41075276 41075347 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013761.1 MGP_CASTEiJ_G0011924.1 mouse_genomes_project 3 99232462 99233117 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062051.1 MGP_CASTEiJ_G0026642.1 mouse_genomes_project 3 90756037 90775745 + MGP_CASTEiJ_P0062051 Pglyrp4 protein_coding protein_coding MGP_CASTEiJ_T0062052.1 MGP_CASTEiJ_G0026642.1 mouse_genomes_project 3 90756042 90774742 + MGP_CASTEiJ_P0062052 Pglyrp4 protein_coding protein_coding MGP_CASTEiJ_T0062053.1 MGP_CASTEiJ_G0026642.1 mouse_genomes_project 3 90770876 90775743 + Pglyrp4 protein_coding processed_transcript MGP_CASTEiJ_T0061926.1 MGP_CASTEiJ_G0026614.1 mouse_genomes_project 3 90026907 90047275 + MGP_CASTEiJ_P0061926 Tpm3 protein_coding protein_coding MGP_CASTEiJ_T0061927.1 MGP_CASTEiJ_G0026614.1 mouse_genomes_project 3 90033802 90043024 + Tpm3 protein_coding retained_intron MGP_CASTEiJ_T0061928.1 MGP_CASTEiJ_G0026614.1 mouse_genomes_project 3 90033802 90044743 + Tpm3 protein_coding retained_intron MGP_CASTEiJ_T0061929.1 MGP_CASTEiJ_G0026614.1 mouse_genomes_project 3 90033852 90054937 + MGP_CASTEiJ_P0061929 Tpm3 protein_coding protein_coding MGP_CASTEiJ_T0061930.1 MGP_CASTEiJ_G0026614.1 mouse_genomes_project 3 90033869 90046239 + MGP_CASTEiJ_P0061930 Tpm3 protein_coding protein_coding MGP_CASTEiJ_T0061931.1 MGP_CASTEiJ_G0026614.1 mouse_genomes_project 3 90040256 90042694 + Tpm3 protein_coding retained_intron MGP_CASTEiJ_T0061932.1 MGP_CASTEiJ_G0026614.1 mouse_genomes_project 3 90042455 90044954 + Tpm3 protein_coding retained_intron MGP_CASTEiJ_T0061933.1 MGP_CASTEiJ_G0026614.1 mouse_genomes_project 3 90042585 90043062 + Tpm3 protein_coding retained_intron MGP_CASTEiJ_T0061934.1 MGP_CASTEiJ_G0026614.1 mouse_genomes_project 3 90042602 90043714 + Tpm3 protein_coding retained_intron MGP_CASTEiJ_T0061935.1 MGP_CASTEiJ_G0026614.1 mouse_genomes_project 3 90043207 90045189 + Tpm3 protein_coding retained_intron MGP_CASTEiJ_T0061936.1 MGP_CASTEiJ_G0026614.1 mouse_genomes_project 3 90044777 90045616 + Tpm3 protein_coding retained_intron MGP_CASTEiJ_T0061937.1 MGP_CASTEiJ_G0026614.1 mouse_genomes_project 3 90045205 90054937 + Tpm3 protein_coding processed_transcript MGP_CASTEiJ_T0013498.1 MGP_CASTEiJ_G0011661.1 mouse_genomes_project 3 11241065 11241320 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063544.1 MGP_CASTEiJ_G0027010.1 mouse_genomes_project 3 125577281 125602478 - MGP_CASTEiJ_P0063544 1700003H04Rik protein_coding protein_coding MGP_CASTEiJ_T0063545.1 MGP_CASTEiJ_G0027010.1 mouse_genomes_project 3 125577281 125602478 - MGP_CASTEiJ_P0063545 1700003H04Rik protein_coding protein_coding MGP_CASTEiJ_T0063546.1 MGP_CASTEiJ_G0027010.1 mouse_genomes_project 3 125586818 125602479 - MGP_CASTEiJ_P0063546 1700003H04Rik protein_coding protein_coding MGP_CASTEiJ_T0063547.1 MGP_CASTEiJ_G0027010.1 mouse_genomes_project 3 125594755 125602488 - MGP_CASTEiJ_P0063547 1700003H04Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063548.1 MGP_CASTEiJ_G0027010.1 mouse_genomes_project 3 125594756 125602481 - MGP_CASTEiJ_P0063548 1700003H04Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063549.1 MGP_CASTEiJ_G0027010.1 mouse_genomes_project 3 125594756 125599908 - MGP_CASTEiJ_P0063549 1700003H04Rik protein_coding protein_coding MGP_CASTEiJ_T0098934.1 MGP_CASTEiJ_G0035858.1 mouse_genomes_project 3 146652650 146655836 - Gm43707 sense_intronic sense_intronic MGP_CASTEiJ_T0100978.1 MGP_CASTEiJ_G0037891.1 mouse_genomes_project 3 90087245 90087377 + Gm23723 snoRNA snoRNA MGP_CASTEiJ_T0063191.1 MGP_CASTEiJ_G0026942.1 mouse_genomes_project 3 109091719 109134536 - MGP_CASTEiJ_P0063191 Gpsm2 protein_coding protein_coding MGP_CASTEiJ_T0063192.1 MGP_CASTEiJ_G0026942.1 mouse_genomes_project 3 109112226 109113328 - Gpsm2 protein_coding retained_intron MGP_CASTEiJ_T0063193.1 MGP_CASTEiJ_G0026942.1 mouse_genomes_project 3 109112654 109122499 - MGP_CASTEiJ_P0063193 Gpsm2 protein_coding protein_coding MGP_CASTEiJ_T0063194.1 MGP_CASTEiJ_G0026942.1 mouse_genomes_project 3 109113791 109134343 - Gpsm2 protein_coding processed_transcript MGP_CASTEiJ_T0060284.1 MGP_CASTEiJ_G0026297.1 mouse_genomes_project 3 28408421 28478598 - MGP_CASTEiJ_P0060284 Phc3 protein_coding protein_coding MGP_CASTEiJ_T0060285.1 MGP_CASTEiJ_G0026297.1 mouse_genomes_project 3 28408574 28478602 - MGP_CASTEiJ_P0060285 Phc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060286.1 MGP_CASTEiJ_G0026297.1 mouse_genomes_project 3 28415819 28478602 - MGP_CASTEiJ_P0060286 Phc3 protein_coding protein_coding MGP_CASTEiJ_T0060287.1 MGP_CASTEiJ_G0026297.1 mouse_genomes_project 3 28416020 28478602 - MGP_CASTEiJ_P0060287 Phc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060288.1 MGP_CASTEiJ_G0026297.1 mouse_genomes_project 3 28416331 28478596 - MGP_CASTEiJ_P0060288 Phc3 protein_coding protein_coding MGP_CASTEiJ_T0060289.1 MGP_CASTEiJ_G0026297.1 mouse_genomes_project 3 28416331 28478596 - MGP_CASTEiJ_P0060289 Phc3 protein_coding protein_coding MGP_CASTEiJ_T0060290.1 MGP_CASTEiJ_G0026297.1 mouse_genomes_project 3 28429167 28441095 - Phc3 protein_coding retained_intron MGP_CASTEiJ_T0060291.1 MGP_CASTEiJ_G0026297.1 mouse_genomes_project 3 28437097 28478612 - MGP_CASTEiJ_P0060291 Phc3 protein_coding protein_coding MGP_CASTEiJ_T0060292.1 MGP_CASTEiJ_G0026297.1 mouse_genomes_project 3 28467537 28475142 - Phc3 protein_coding retained_intron MGP_CASTEiJ_T0004265.1 MGP_CASTEiJ_G0003728.1 mouse_genomes_project 3 140045438 140075090 - Gm16559 antisense antisense MGP_CASTEiJ_T0013874.1 MGP_CASTEiJ_G0012037.1 mouse_genomes_project 3 137126505 137126834 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098932.1 MGP_CASTEiJ_G0035856.1 mouse_genomes_project 3 130593598 130595103 + Gm27195 sense_intronic sense_intronic MGP_CASTEiJ_T0004093.1 MGP_CASTEiJ_G0003613.1 mouse_genomes_project 3 33570166 33629469 + Gm15952 antisense antisense MGP_CASTEiJ_T0004094.1 MGP_CASTEiJ_G0003613.1 mouse_genomes_project 3 33570166 33579808 + Gm15952 antisense antisense MGP_CASTEiJ_T0004095.1 MGP_CASTEiJ_G0003613.1 mouse_genomes_project 3 33570178 33575155 + Gm15952 antisense antisense MGP_CASTEiJ_T0098927.1 MGP_CASTEiJ_G0035851.1 mouse_genomes_project 3 105784584 105787820 - Gm43329 sense_intronic sense_intronic MGP_CASTEiJ_T0007271.1 MGP_CASTEiJ_G0005977.1 mouse_genomes_project 3 10915551 10916690 + lincRNA lincRNA MGP_CASTEiJ_T0007272.1 MGP_CASTEiJ_G0005977.1 mouse_genomes_project 3 10915578 10916691 + lincRNA lincRNA MGP_CASTEiJ_T0007273.1 MGP_CASTEiJ_G0005977.1 mouse_genomes_project 3 10915624 10916477 + lincRNA lincRNA MGP_CASTEiJ_T0007274.1 MGP_CASTEiJ_G0005977.1 mouse_genomes_project 3 10915802 10918499 + lincRNA lincRNA MGP_CASTEiJ_T0061189.1 MGP_CASTEiJ_G0026476.1 mouse_genomes_project 3 78717458 78839322 - MGP_CASTEiJ_P0061189 Fnip2 protein_coding protein_coding MGP_CASTEiJ_T0061190.1 MGP_CASTEiJ_G0026476.1 mouse_genomes_project 3 78718369 78727674 - Fnip2 protein_coding retained_intron MGP_CASTEiJ_T0061191.1 MGP_CASTEiJ_G0026476.1 mouse_genomes_project 3 78720776 78839208 - MGP_CASTEiJ_P0061191 Fnip2 protein_coding protein_coding MGP_CASTEiJ_T0061192.1 MGP_CASTEiJ_G0026476.1 mouse_genomes_project 3 78721075 78764207 - Fnip2 protein_coding retained_intron MGP_CASTEiJ_T0061193.1 MGP_CASTEiJ_G0026476.1 mouse_genomes_project 3 78767908 78782537 - Fnip2 protein_coding processed_transcript MGP_CASTEiJ_T0061194.1 MGP_CASTEiJ_G0026476.1 mouse_genomes_project 3 78769462 78839205 - Fnip2 protein_coding retained_intron MGP_CASTEiJ_T0004115.1 MGP_CASTEiJ_G0003629.1 mouse_genomes_project 3 53539200 53568397 + 4931419H13Rik antisense antisense MGP_CASTEiJ_T0063032.1 MGP_CASTEiJ_G0026903.1 mouse_genomes_project 3 107601512 107606680 + MGP_CASTEiJ_P0063032 Lamtor5 protein_coding protein_coding MGP_CASTEiJ_T0063096.1 MGP_CASTEiJ_G0026921.1 mouse_genomes_project 3 108405404 108409672 - MGP_CASTEiJ_P0063096 Gstm4 protein_coding protein_coding MGP_CASTEiJ_T0063097.1 MGP_CASTEiJ_G0026921.1 mouse_genomes_project 3 108405407 108409894 - MGP_CASTEiJ_P0063097 Gstm4 protein_coding protein_coding MGP_CASTEiJ_T0001097.1 MGP_CASTEiJ_G0001030.1 mouse_genomes_project 3 32236319 32239042 + TEC TEC MGP_CASTEiJ_T0064402.1 MGP_CASTEiJ_G0027158.1 mouse_genomes_project 3 157411997 157438852 + MGP_CASTEiJ_P0064402 Cryz protein_coding protein_coding MGP_CASTEiJ_T0064403.1 MGP_CASTEiJ_G0027158.1 mouse_genomes_project 3 157411997 157438850 + MGP_CASTEiJ_P0064403 Cryz protein_coding protein_coding MGP_CASTEiJ_T0064404.1 MGP_CASTEiJ_G0027158.1 mouse_genomes_project 3 157411997 157438852 + MGP_CASTEiJ_P0064404 Cryz protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064405.1 MGP_CASTEiJ_G0027158.1 mouse_genomes_project 3 157412430 157437837 + MGP_CASTEiJ_P0064405 Cryz protein_coding protein_coding MGP_CASTEiJ_T0064406.1 MGP_CASTEiJ_G0027158.1 mouse_genomes_project 3 157412483 157427159 + MGP_CASTEiJ_P0064406 Cryz protein_coding protein_coding MGP_CASTEiJ_T0064407.1 MGP_CASTEiJ_G0027158.1 mouse_genomes_project 3 157412508 157434272 + MGP_CASTEiJ_P0064407 Cryz protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064408.1 MGP_CASTEiJ_G0027158.1 mouse_genomes_project 3 157412637 157427041 + MGP_CASTEiJ_P0064408 Cryz protein_coding protein_coding MGP_CASTEiJ_T0064409.1 MGP_CASTEiJ_G0027158.1 mouse_genomes_project 3 157412687 157429453 + MGP_CASTEiJ_P0064409 Cryz protein_coding protein_coding MGP_CASTEiJ_T0064410.1 MGP_CASTEiJ_G0027158.1 mouse_genomes_project 3 157412723 157434172 + MGP_CASTEiJ_P0064410 Cryz protein_coding protein_coding MGP_CASTEiJ_T0064411.1 MGP_CASTEiJ_G0027158.1 mouse_genomes_project 3 157420930 157437840 + MGP_CASTEiJ_P0064411 Cryz protein_coding protein_coding MGP_CASTEiJ_T0064412.1 MGP_CASTEiJ_G0027158.1 mouse_genomes_project 3 157431486 157435033 + Cryz protein_coding retained_intron MGP_CASTEiJ_T0062102.1 MGP_CASTEiJ_G0026685.1 mouse_genomes_project 3 92253343 92253803 + MGP_CASTEiJ_P0062102 protein_coding protein_coding MGP_CASTEiJ_T0007309.1 MGP_CASTEiJ_G0006004.1 mouse_genomes_project 3 32062398 32063178 - Gm29135 lincRNA lincRNA MGP_CASTEiJ_T0007308.1 MGP_CASTEiJ_G0006003.1 mouse_genomes_project 3 32005823 32013573 - Gm20515 lincRNA lincRNA MGP_CASTEiJ_T0060450.1 MGP_CASTEiJ_G0026325.1 mouse_genomes_project 3 33836311 33892449 - MGP_CASTEiJ_P0060450 Qrfpr protein_coding protein_coding MGP_CASTEiJ_T0060451.1 MGP_CASTEiJ_G0026325.1 mouse_genomes_project 3 33836313 33892487 - MGP_CASTEiJ_P0060451 Qrfpr protein_coding protein_coding MGP_CASTEiJ_T0060452.1 MGP_CASTEiJ_G0026325.1 mouse_genomes_project 3 33846517 33892354 - Qrfpr protein_coding retained_intron MGP_CASTEiJ_T0007406.1 MGP_CASTEiJ_G0006079.1 mouse_genomes_project 3 83874099 83898343 - 4930565D16Rik lincRNA lincRNA MGP_CASTEiJ_T0063959.1 MGP_CASTEiJ_G0027081.1 mouse_genomes_project 3 139936052 139954654 - MGP_CASTEiJ_P0063959 4930579F01Rik protein_coding protein_coding MGP_CASTEiJ_T0063960.1 MGP_CASTEiJ_G0027081.1 mouse_genomes_project 3 139936107 139954694 - MGP_CASTEiJ_P0063960 4930579F01Rik protein_coding protein_coding MGP_CASTEiJ_T0063961.1 MGP_CASTEiJ_G0027081.1 mouse_genomes_project 3 139951712 139961777 - 4930579F01Rik protein_coding processed_transcript MGP_CASTEiJ_T0013666.1 MGP_CASTEiJ_G0011829.1 mouse_genomes_project 3 68257930 68259286 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062650.1 MGP_CASTEiJ_G0026813.1 mouse_genomes_project 3 98316060 98329574 - MGP_CASTEiJ_P0062650 protein_coding protein_coding MGP_CASTEiJ_T0013559.1 MGP_CASTEiJ_G0011722.1 mouse_genomes_project 3 33877412 33878374 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013849.1 MGP_CASTEiJ_G0012012.1 mouse_genomes_project 3 127563144 127563310 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001288.1 MGP_CASTEiJ_G0001219.1 mouse_genomes_project 3 129308914 129311475 + TEC TEC MGP_CASTEiJ_T0001289.1 MGP_CASTEiJ_G0001219.1 mouse_genomes_project 3 129308915 129311475 + TEC TEC MGP_CASTEiJ_T0063485.1 MGP_CASTEiJ_G0026997.1 mouse_genomes_project 3 123497375 123524754 - MGP_CASTEiJ_P0063485 Fnbp1l protein_coding protein_coding MGP_CASTEiJ_T0063486.1 MGP_CASTEiJ_G0026997.1 mouse_genomes_project 3 123497381 123583806 - MGP_CASTEiJ_P0063486 Fnbp1l protein_coding protein_coding MGP_CASTEiJ_T0063487.1 MGP_CASTEiJ_G0026997.1 mouse_genomes_project 3 123500778 123583633 - MGP_CASTEiJ_P0063487 Fnbp1l protein_coding protein_coding MGP_CASTEiJ_T0063488.1 MGP_CASTEiJ_G0026997.1 mouse_genomes_project 3 123507718 123514763 - Fnbp1l protein_coding retained_intron MGP_CASTEiJ_T0063489.1 MGP_CASTEiJ_G0026997.1 mouse_genomes_project 3 123518752 123520087 - Fnbp1l protein_coding retained_intron MGP_CASTEiJ_T0064051.1 MGP_CASTEiJ_G0027100.1 mouse_genomes_project 3 144699562 144719064 + MGP_CASTEiJ_P0064051 Gbp2 protein_coding protein_coding MGP_CASTEiJ_T0064052.1 MGP_CASTEiJ_G0027100.1 mouse_genomes_project 3 144699881 144711726 + MGP_CASTEiJ_P0064052 Gbp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064053.1 MGP_CASTEiJ_G0027100.1 mouse_genomes_project 3 144702949 144719064 + MGP_CASTEiJ_P0064053 Gbp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100984.1 MGP_CASTEiJ_G0037897.1 mouse_genomes_project 3 100021955 100022032 + Gm25802 snoRNA snoRNA MGP_CASTEiJ_T0001233.1 MGP_CASTEiJ_G0001164.1 mouse_genomes_project 3 108663523 108668724 + TEC TEC MGP_CASTEiJ_T0062567.1 MGP_CASTEiJ_G0026793.1 mouse_genomes_project 3 96404270 96432789 + MGP_CASTEiJ_P0062567 Pdzk1 protein_coding protein_coding MGP_CASTEiJ_T0062568.1 MGP_CASTEiJ_G0026793.1 mouse_genomes_project 3 96404449 96432874 + MGP_CASTEiJ_P0062568 Pdzk1 protein_coding protein_coding MGP_CASTEiJ_T0062569.1 MGP_CASTEiJ_G0026793.1 mouse_genomes_project 3 96405062 96452074 + MGP_CASTEiJ_P0062569 Pdzk1 protein_coding protein_coding MGP_CASTEiJ_T0062570.1 MGP_CASTEiJ_G0026793.1 mouse_genomes_project 3 96407140 96451894 + MGP_CASTEiJ_P0062570 Pdzk1 protein_coding protein_coding MGP_CASTEiJ_T0062571.1 MGP_CASTEiJ_G0026793.1 mouse_genomes_project 3 96407157 96451620 + MGP_CASTEiJ_P0062571 Pdzk1 protein_coding protein_coding MGP_CASTEiJ_T0062572.1 MGP_CASTEiJ_G0026793.1 mouse_genomes_project 3 96407157 96451744 + MGP_CASTEiJ_P0062572 Pdzk1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062573.1 MGP_CASTEiJ_G0026793.1 mouse_genomes_project 3 96410188 96431513 + MGP_CASTEiJ_P0062573 Pdzk1 protein_coding protein_coding MGP_CASTEiJ_T0062851.1 MGP_CASTEiJ_G0026859.1 mouse_genomes_project 3 103745854 103751863 + MGP_CASTEiJ_P0062851 Bcl2l15 protein_coding protein_coding MGP_CASTEiJ_T0062852.1 MGP_CASTEiJ_G0026859.1 mouse_genomes_project 3 103746024 103768491 + MGP_CASTEiJ_P0062852 Bcl2l15 protein_coding protein_coding MGP_CASTEiJ_T0062853.1 MGP_CASTEiJ_G0026859.1 mouse_genomes_project 3 103746085 103758395 + MGP_CASTEiJ_P0062853 Bcl2l15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0062854.1 MGP_CASTEiJ_G0026859.1 mouse_genomes_project 3 103760171 103767700 + Bcl2l15 protein_coding processed_transcript MGP_CASTEiJ_T0062855.1 MGP_CASTEiJ_G0026859.1 mouse_genomes_project 3 103765856 103767543 + Bcl2l15 protein_coding processed_transcript MGP_CASTEiJ_T0063214.1 MGP_CASTEiJ_G0026946.1 mouse_genomes_project 3 109335890 109348916 - MGP_CASTEiJ_P0063214 Prpf38b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063215.1 MGP_CASTEiJ_G0026946.1 mouse_genomes_project 3 109335892 109348947 - MGP_CASTEiJ_P0063215 Prpf38b protein_coding protein_coding MGP_CASTEiJ_T0063216.1 MGP_CASTEiJ_G0026946.1 mouse_genomes_project 3 109336232 109348687 - MGP_CASTEiJ_P0063216 Prpf38b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063217.1 MGP_CASTEiJ_G0026946.1 mouse_genomes_project 3 109337345 109338671 - Prpf38b protein_coding retained_intron MGP_CASTEiJ_T0063218.1 MGP_CASTEiJ_G0026946.1 mouse_genomes_project 3 109337560 109339196 - Prpf38b protein_coding processed_transcript MGP_CASTEiJ_T0063219.1 MGP_CASTEiJ_G0026946.1 mouse_genomes_project 3 109337705 109345140 - Prpf38b protein_coding processed_transcript MGP_CASTEiJ_T0063220.1 MGP_CASTEiJ_G0026946.1 mouse_genomes_project 3 109339634 109348930 - Prpf38b protein_coding retained_intron MGP_CASTEiJ_T0063221.1 MGP_CASTEiJ_G0026946.1 mouse_genomes_project 3 109339637 109347847 - Prpf38b protein_coding retained_intron MGP_CASTEiJ_T0004124.1 MGP_CASTEiJ_G0003636.1 mouse_genomes_project 3 61065420 61068429 - 9330121J05Rik antisense antisense MGP_CASTEiJ_T0061659.1 MGP_CASTEiJ_G0026572.1 mouse_genomes_project 3 88785558 88815891 - MGP_CASTEiJ_P0061659 Dap3 protein_coding protein_coding MGP_CASTEiJ_T0061660.1 MGP_CASTEiJ_G0026572.1 mouse_genomes_project 3 88789371 88791269 - Dap3 protein_coding retained_intron MGP_CASTEiJ_T0061661.1 MGP_CASTEiJ_G0026572.1 mouse_genomes_project 3 88789371 88815972 - MGP_CASTEiJ_P0061661 Dap3 protein_coding protein_coding MGP_CASTEiJ_T0061662.1 MGP_CASTEiJ_G0026572.1 mouse_genomes_project 3 88789494 88796507 - MGP_CASTEiJ_P0061662 Dap3 protein_coding protein_coding MGP_CASTEiJ_T0061663.1 MGP_CASTEiJ_G0026572.1 mouse_genomes_project 3 88789530 88796540 - MGP_CASTEiJ_P0061663 Dap3 protein_coding protein_coding MGP_CASTEiJ_T0061664.1 MGP_CASTEiJ_G0026572.1 mouse_genomes_project 3 88794196 88816319 - MGP_CASTEiJ_P0061664 Dap3 protein_coding protein_coding MGP_CASTEiJ_T0061665.1 MGP_CASTEiJ_G0026572.1 mouse_genomes_project 3 88794230 88817107 - MGP_CASTEiJ_P0061665 Dap3 protein_coding protein_coding MGP_CASTEiJ_T0061666.1 MGP_CASTEiJ_G0026572.1 mouse_genomes_project 3 88795165 88816292 - MGP_CASTEiJ_P0061666 Dap3 protein_coding protein_coding MGP_CASTEiJ_T0061667.1 MGP_CASTEiJ_G0026572.1 mouse_genomes_project 3 88799116 88804033 - MGP_CASTEiJ_P0061667 Dap3 protein_coding protein_coding MGP_CASTEiJ_T0061668.1 MGP_CASTEiJ_G0026572.1 mouse_genomes_project 3 88815075 88817036 - Dap3 protein_coding processed_transcript MGP_CASTEiJ_T0061670.1 MGP_CASTEiJ_G0026572.1 mouse_genomes_project 3 88816641 88817108 - Dap3 protein_coding processed_transcript MGP_CASTEiJ_T0013808.1 MGP_CASTEiJ_G0011971.1 mouse_genomes_project 3 114095830 114096438 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060649.1 MGP_CASTEiJ_G0026358.1 mouse_genomes_project 3 44429004 44434638 - MGP_CASTEiJ_P0060649 Pabpc4l protein_coding protein_coding MGP_CASTEiJ_T0060650.1 MGP_CASTEiJ_G0026358.1 mouse_genomes_project 3 44429004 44434917 - MGP_CASTEiJ_P0060650 Pabpc4l protein_coding protein_coding MGP_CASTEiJ_T0060651.1 MGP_CASTEiJ_G0026358.1 mouse_genomes_project 3 44433387 44434638 - MGP_CASTEiJ_P0060651 Pabpc4l protein_coding protein_coding MGP_CASTEiJ_T0060652.1 MGP_CASTEiJ_G0026358.1 mouse_genomes_project 3 44433751 44434617 - MGP_CASTEiJ_P0060652 Pabpc4l protein_coding protein_coding MGP_CASTEiJ_T0010224.1 MGP_CASTEiJ_G0008412.1 mouse_genomes_project 3 34150123 34150187 - Mir7009 miRNA miRNA MGP_CASTEiJ_T0062206.1 MGP_CASTEiJ_G0026715.1 mouse_genomes_project 3 94372580 94377544 + MGP_CASTEiJ_P0062206 protein_coding protein_coding MGP_CASTEiJ_T0062208.1 MGP_CASTEiJ_G0026715.1 mouse_genomes_project 3 94372659 94379704 + MGP_CASTEiJ_P0062208 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062210.1 MGP_CASTEiJ_G0026715.1 mouse_genomes_project 3 94372671 94377551 + MGP_CASTEiJ_P0062210 protein_coding protein_coding MGP_CASTEiJ_T0001257.1 MGP_CASTEiJ_G0001188.1 mouse_genomes_project 3 123535493 123538042 - TEC TEC MGP_CASTEiJ_T0060896.1 MGP_CASTEiJ_G0026409.1 mouse_genomes_project 3 57616947 57715662 + MGP_CASTEiJ_P0060896 Med12l protein_coding protein_coding MGP_CASTEiJ_T0060897.1 MGP_CASTEiJ_G0026409.1 mouse_genomes_project 3 57617609 57942007 + MGP_CASTEiJ_P0060897 Med12l protein_coding protein_coding MGP_CASTEiJ_T0060898.1 MGP_CASTEiJ_G0026409.1 mouse_genomes_project 3 57618100 57941735 + MGP_CASTEiJ_P0060898 Med12l protein_coding protein_coding MGP_CASTEiJ_T0060899.1 MGP_CASTEiJ_G0026409.1 mouse_genomes_project 3 57618100 57941735 + MGP_CASTEiJ_P0060899 Med12l protein_coding protein_coding MGP_CASTEiJ_T0060900.1 MGP_CASTEiJ_G0026409.1 mouse_genomes_project 3 57618100 57714562 + MGP_CASTEiJ_P0060900 Med12l protein_coding protein_coding MGP_CASTEiJ_T0060920.1 MGP_CASTEiJ_G0026409.1 mouse_genomes_project 3 57885598 57939227 + MGP_CASTEiJ_P0060920 Med12l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0102269.1 MGP_CASTEiJ_G0038994.1 mouse_genomes_project 3 63506651 63507548 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0017258.1 MGP_CASTEiJ_G0014838.1 mouse_genomes_project 3 123225683 123232121 - processed_transcript retained_intron MGP_CASTEiJ_T0102274.1 MGP_CASTEiJ_G0038999.1 mouse_genomes_project 3 78309179 78309705 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0063904.1 MGP_CASTEiJ_G0027068.1 mouse_genomes_project 3 138379369 138516839 + Ppp3ca protein_coding processed_transcript MGP_CASTEiJ_T0063905.1 MGP_CASTEiJ_G0027068.1 mouse_genomes_project 3 138379369 138667419 + MGP_CASTEiJ_P0063905 Ppp3ca protein_coding protein_coding MGP_CASTEiJ_T0063906.1 MGP_CASTEiJ_G0027068.1 mouse_genomes_project 3 138380015 138665481 + MGP_CASTEiJ_P0063906 Ppp3ca protein_coding protein_coding MGP_CASTEiJ_T0063907.1 MGP_CASTEiJ_G0027068.1 mouse_genomes_project 3 138557128 138608878 + Ppp3ca protein_coding processed_transcript MGP_CASTEiJ_T0063908.1 MGP_CASTEiJ_G0027068.1 mouse_genomes_project 3 138607806 138610458 + Ppp3ca protein_coding retained_intron MGP_CASTEiJ_T0063909.1 MGP_CASTEiJ_G0027068.1 mouse_genomes_project 3 138615310 138617345 + Ppp3ca protein_coding retained_intron MGP_CASTEiJ_T0063910.1 MGP_CASTEiJ_G0027068.1 mouse_genomes_project 3 138631755 138658388 + Ppp3ca protein_coding processed_transcript MGP_CASTEiJ_T0063911.1 MGP_CASTEiJ_G0027068.1 mouse_genomes_project 3 138632616 138635442 + Ppp3ca protein_coding retained_intron MGP_CASTEiJ_T0007261.1 MGP_CASTEiJ_G0005970.1 mouse_genomes_project 3 5976537 5979869 - C230057A21Rik lincRNA lincRNA MGP_CASTEiJ_T0007262.1 MGP_CASTEiJ_G0005970.1 mouse_genomes_project 3 5976732 5980029 - C230057A21Rik lincRNA lincRNA MGP_CASTEiJ_T0060011.1 MGP_CASTEiJ_G0026239.1 mouse_genomes_project 3 7704667 7714285 - MGP_CASTEiJ_P0060011 Zfand1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0060012.1 MGP_CASTEiJ_G0026239.1 mouse_genomes_project 3 7704828 7716764 - MGP_CASTEiJ_P0060012 Zfand1 protein_coding protein_coding MGP_CASTEiJ_T0060013.1 MGP_CASTEiJ_G0026239.1 mouse_genomes_project 3 7704830 7709739 - Zfand1 protein_coding retained_intron MGP_CASTEiJ_T0060014.1 MGP_CASTEiJ_G0026239.1 mouse_genomes_project 3 7705494 7716760 - MGP_CASTEiJ_P0060014 Zfand1 protein_coding protein_coding MGP_CASTEiJ_T0060015.1 MGP_CASTEiJ_G0026239.1 mouse_genomes_project 3 7705557 7716764 - MGP_CASTEiJ_P0060015 Zfand1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060016.1 MGP_CASTEiJ_G0026239.1 mouse_genomes_project 3 7705692 7714023 - MGP_CASTEiJ_P0060016 Zfand1 protein_coding protein_coding MGP_CASTEiJ_T0060017.1 MGP_CASTEiJ_G0026239.1 mouse_genomes_project 3 7709675 7711213 - Zfand1 protein_coding retained_intron MGP_CASTEiJ_T0060018.1 MGP_CASTEiJ_G0026239.1 mouse_genomes_project 3 7710933 7716761 - Zfand1 protein_coding processed_transcript MGP_CASTEiJ_T0060019.1 MGP_CASTEiJ_G0026239.1 mouse_genomes_project 3 7715885 7716763 - Zfand1 protein_coding processed_transcript MGP_CASTEiJ_T0099708.1 MGP_CASTEiJ_G0036621.1 mouse_genomes_project 3 71720558 71720709 - Gm22451 snRNA snRNA MGP_CASTEiJ_T0062437.1 MGP_CASTEiJ_G0026751.1 mouse_genomes_project 3 95393321 95396898 - MGP_CASTEiJ_P0062437 Ciart protein_coding protein_coding MGP_CASTEiJ_T0062438.1 MGP_CASTEiJ_G0026751.1 mouse_genomes_project 3 95393321 95396872 - MGP_CASTEiJ_P0062438 Ciart protein_coding protein_coding MGP_CASTEiJ_T0062439.1 MGP_CASTEiJ_G0026751.1 mouse_genomes_project 3 95393477 95396918 - MGP_CASTEiJ_P0062439 Ciart protein_coding protein_coding MGP_CASTEiJ_T0062440.1 MGP_CASTEiJ_G0026751.1 mouse_genomes_project 3 95394183 95395911 - MGP_CASTEiJ_P0062440 Ciart protein_coding protein_coding MGP_CASTEiJ_T0062441.1 MGP_CASTEiJ_G0026751.1 mouse_genomes_project 3 95395061 95396907 - MGP_CASTEiJ_P0062441 Ciart protein_coding protein_coding MGP_CASTEiJ_T0062442.1 MGP_CASTEiJ_G0026751.1 mouse_genomes_project 3 95395337 95396741 - MGP_CASTEiJ_P0062442 Ciart protein_coding protein_coding MGP_CASTEiJ_T0001271.1 MGP_CASTEiJ_G0001202.1 mouse_genomes_project 3 127796680 127797329 + TEC TEC MGP_CASTEiJ_T0063652.1 MGP_CASTEiJ_G0027024.1 mouse_genomes_project 3 129122607 129151145 - MGP_CASTEiJ_P0063652 5730508B09Rik protein_coding protein_coding MGP_CASTEiJ_T0063653.1 MGP_CASTEiJ_G0027024.1 mouse_genomes_project 3 129123229 129151109 - MGP_CASTEiJ_P0063653 5730508B09Rik protein_coding protein_coding MGP_CASTEiJ_T0010231.1 MGP_CASTEiJ_G0008419.1 mouse_genomes_project 3 67806113 67806208 + Mir16-2 miRNA miRNA MGP_CASTEiJ_T0102302.1 MGP_CASTEiJ_G0039027.1 mouse_genomes_project 3 159717485 159717960 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099727.1 MGP_CASTEiJ_G0036640.1 mouse_genomes_project 3 92257307 92258236 - Gm24481 snRNA snRNA MGP_CASTEiJ_T0013865.1 MGP_CASTEiJ_G0012028.1 mouse_genomes_project 3 135765742 135766183 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013745.1 MGP_CASTEiJ_G0011908.1 mouse_genomes_project 3 95285387 95285534 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101589.1 MGP_CASTEiJ_G0038455.1 mouse_genomes_project 3 93837014 93837783 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101590.1 MGP_CASTEiJ_G0038455.1 mouse_genomes_project 3 93837204 93837617 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0007254.1 MGP_CASTEiJ_G0005966.1 mouse_genomes_project 3 1977215 1978482 + 1110015O18Rik lincRNA lincRNA MGP_CASTEiJ_T0007255.1 MGP_CASTEiJ_G0005966.1 mouse_genomes_project 3 1978368 1996012 + 1110015O18Rik lincRNA lincRNA MGP_CASTEiJ_T0007256.1 MGP_CASTEiJ_G0005966.1 mouse_genomes_project 3 1979155 1995077 + 1110015O18Rik lincRNA lincRNA MGP_CASTEiJ_T0099751.1 MGP_CASTEiJ_G0036664.1 mouse_genomes_project 3 133579714 133579821 - Gm22421 snRNA snRNA MGP_CASTEiJ_T0064257.1 MGP_CASTEiJ_G0027140.1 mouse_genomes_project 3 154753132 154767956 - Gipc2 protein_coding processed_transcript MGP_CASTEiJ_T0064258.1 MGP_CASTEiJ_G0027140.1 mouse_genomes_project 3 154753437 154832115 - MGP_CASTEiJ_P0064258 Gipc2 protein_coding protein_coding MGP_CASTEiJ_T0064259.1 MGP_CASTEiJ_G0027140.1 mouse_genomes_project 3 154753439 154766569 - Gipc2 protein_coding processed_transcript MGP_CASTEiJ_T0064260.1 MGP_CASTEiJ_G0027140.1 mouse_genomes_project 3 154753480 154766136 - Gipc2 protein_coding processed_transcript MGP_CASTEiJ_T0064261.1 MGP_CASTEiJ_G0027140.1 mouse_genomes_project 3 154753617 154762381 - Gipc2 protein_coding retained_intron MGP_CASTEiJ_T0064262.1 MGP_CASTEiJ_G0027140.1 mouse_genomes_project 3 154753792 154812631 - Gipc2 protein_coding processed_transcript MGP_CASTEiJ_T0064263.1 MGP_CASTEiJ_G0027140.1 mouse_genomes_project 3 154761363 154767895 - Gipc2 protein_coding retained_intron MGP_CASTEiJ_T0064264.1 MGP_CASTEiJ_G0027140.1 mouse_genomes_project 3 154791008 154802519 - Gipc2 protein_coding retained_intron MGP_CASTEiJ_T0064265.1 MGP_CASTEiJ_G0027140.1 mouse_genomes_project 3 154793397 154831635 - Gipc2 protein_coding processed_transcript MGP_CASTEiJ_T0001260.1 MGP_CASTEiJ_G0001191.1 mouse_genomes_project 3 124192374 124194973 - TEC TEC MGP_CASTEiJ_T0062258.1 MGP_CASTEiJ_G0026721.1 mouse_genomes_project 3 94557118 94571403 + MGP_CASTEiJ_P0062258 Vps72 protein_coding protein_coding MGP_CASTEiJ_T0062259.1 MGP_CASTEiJ_G0026721.1 mouse_genomes_project 3 94557138 94566959 + Vps72 protein_coding processed_transcript MGP_CASTEiJ_T0062260.1 MGP_CASTEiJ_G0026721.1 mouse_genomes_project 3 94557169 94571073 + Vps72 protein_coding processed_transcript MGP_CASTEiJ_T0062261.1 MGP_CASTEiJ_G0026721.1 mouse_genomes_project 3 94560723 94567745 + Vps72 protein_coding processed_transcript MGP_CASTEiJ_T0062262.1 MGP_CASTEiJ_G0026721.1 mouse_genomes_project 3 94565380 94567864 + Vps72 protein_coding retained_intron MGP_CASTEiJ_T0100937.1 MGP_CASTEiJ_G0037850.1 mouse_genomes_project 3 4189692 4189805 + Gm22074 snoRNA snoRNA MGP_CASTEiJ_T0017234.1 MGP_CASTEiJ_G0014831.1 mouse_genomes_project 3 104715959 104738080 - Gm43584 processed_transcript processed_transcript MGP_CASTEiJ_T0099680.1 MGP_CASTEiJ_G0036593.1 mouse_genomes_project 3 14058954 14059018 - Gm26485 snRNA snRNA MGP_CASTEiJ_T0102275.1 MGP_CASTEiJ_G0039000.1 mouse_genomes_project 3 78309185 78309710 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0007292.1 MGP_CASTEiJ_G0005988.1 mouse_genomes_project 3 19224480 19225172 - Gm43674 lincRNA lincRNA MGP_CASTEiJ_T0017235.1 MGP_CASTEiJ_G0014832.1 mouse_genomes_project 3 105993856 106018925 + Gm42890 processed_transcript retained_intron MGP_CASTEiJ_T0017236.1 MGP_CASTEiJ_G0014832.1 mouse_genomes_project 3 106000432 106010723 + Gm42890 processed_transcript retained_intron MGP_CASTEiJ_T0063384.1 MGP_CASTEiJ_G0026982.1 mouse_genomes_project 3 119298279 120257540 + MGP_CASTEiJ_P0063384 Dpyd protein_coding protein_coding MGP_CASTEiJ_T0063385.1 MGP_CASTEiJ_G0026982.1 mouse_genomes_project 3 119298280 119550805 + Dpyd protein_coding retained_intron MGP_CASTEiJ_T0063386.1 MGP_CASTEiJ_G0026982.1 mouse_genomes_project 3 119298327 119533018 + Dpyd protein_coding retained_intron MGP_CASTEiJ_T0063387.1 MGP_CASTEiJ_G0026982.1 mouse_genomes_project 3 119298330 119415142 + MGP_CASTEiJ_P0063387 Dpyd protein_coding protein_coding MGP_CASTEiJ_T0063388.1 MGP_CASTEiJ_G0026982.1 mouse_genomes_project 3 119298336 119299303 + Dpyd protein_coding retained_intron MGP_CASTEiJ_T0063389.1 MGP_CASTEiJ_G0026982.1 mouse_genomes_project 3 119564093 119660263 + Dpyd protein_coding retained_intron MGP_CASTEiJ_T0001186.1 MGP_CASTEiJ_G0001117.1 mouse_genomes_project 3 66253807 66255645 + TEC TEC MGP_CASTEiJ_T0013873.1 MGP_CASTEiJ_G0012036.1 mouse_genomes_project 3 136828935 136829360 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061042.1 MGP_CASTEiJ_G0026441.1 mouse_genomes_project 3 65740805 65750387 - MGP_CASTEiJ_P0061042 Shox2 protein_coding protein_coding MGP_CASTEiJ_T0061043.1 MGP_CASTEiJ_G0026441.1 mouse_genomes_project 3 65740860 65750840 - MGP_CASTEiJ_P0061043 Shox2 protein_coding protein_coding MGP_CASTEiJ_T0061044.1 MGP_CASTEiJ_G0026441.1 mouse_genomes_project 3 65742737 65750331 - MGP_CASTEiJ_P0061044 Shox2 protein_coding protein_coding MGP_CASTEiJ_T0061045.1 MGP_CASTEiJ_G0026441.1 mouse_genomes_project 3 65742985 65747895 - MGP_CASTEiJ_P0061045 Shox2 protein_coding protein_coding MGP_CASTEiJ_T0013764.1 MGP_CASTEiJ_G0011927.1 mouse_genomes_project 3 100132825 100133850 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060447.1 MGP_CASTEiJ_G0026324.1 mouse_genomes_project 3 33805633 33824743 + MGP_CASTEiJ_P0060447 D3Ertd254e protein_coding protein_coding MGP_CASTEiJ_T0060448.1 MGP_CASTEiJ_G0026324.1 mouse_genomes_project 3 33805778 33817262 + MGP_CASTEiJ_P0060448 D3Ertd254e protein_coding protein_coding MGP_CASTEiJ_T0060449.1 MGP_CASTEiJ_G0026324.1 mouse_genomes_project 3 33814112 33824736 + MGP_CASTEiJ_P0060449 D3Ertd254e protein_coding protein_coding MGP_CASTEiJ_T0060735.1 MGP_CASTEiJ_G0026376.1 mouse_genomes_project 3 51892547 52041338 - MGP_CASTEiJ_P0060735 Frem2 protein_coding protein_coding MGP_CASTEiJ_T0060736.1 MGP_CASTEiJ_G0026376.1 mouse_genomes_project 3 51894305 51923962 - Frem2 protein_coding processed_transcript MGP_CASTEiJ_T0060737.1 MGP_CASTEiJ_G0026376.1 mouse_genomes_project 3 51894409 51901962 - Frem2 protein_coding retained_intron MGP_CASTEiJ_T0060738.1 MGP_CASTEiJ_G0026376.1 mouse_genomes_project 3 51894845 52041099 - MGP_CASTEiJ_P0060738 Frem2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0060739.1 MGP_CASTEiJ_G0026376.1 mouse_genomes_project 3 52031751 52036216 - Frem2 protein_coding retained_intron MGP_CASTEiJ_T0001074.1 MGP_CASTEiJ_G0001007.1 mouse_genomes_project 3 22371460 22371654 + TEC TEC MGP_CASTEiJ_T0064461.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160950352 160979889 - MGP_CASTEiJ_P0064461 protein_coding protein_coding MGP_CASTEiJ_T0064462.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160950523 160964613 - protein_coding retained_intron MGP_CASTEiJ_T0064463.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160950798 160975009 - MGP_CASTEiJ_P0064463 protein_coding protein_coding MGP_CASTEiJ_T0064464.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160951378 160964330 - protein_coding retained_intron MGP_CASTEiJ_T0064465.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160951744 160979801 - MGP_CASTEiJ_P0064465 protein_coding protein_coding MGP_CASTEiJ_T0064466.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160951761 160974938 - MGP_CASTEiJ_P0064466 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064467.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160951769 160952396 - protein_coding retained_intron MGP_CASTEiJ_T0064468.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160952218 160953023 - protein_coding retained_intron MGP_CASTEiJ_T0064469.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160952226 160963193 - MGP_CASTEiJ_P0064469 protein_coding protein_coding MGP_CASTEiJ_T0064470.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160953872 160964860 - protein_coding retained_intron MGP_CASTEiJ_T0064471.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160956203 160957995 - protein_coding retained_intron MGP_CASTEiJ_T0064472.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160959271 160979846 - MGP_CASTEiJ_P0064472 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064473.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160959311 160979865 - MGP_CASTEiJ_P0064473 protein_coding protein_coding MGP_CASTEiJ_T0064474.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160963201 160974698 - MGP_CASTEiJ_P0064474 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064475.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160964119 160974814 - MGP_CASTEiJ_P0064475 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064476.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160964599 160979856 - protein_coding retained_intron MGP_CASTEiJ_T0064477.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160966434 160979861 - protein_coding retained_intron MGP_CASTEiJ_T0064478.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160968224 160975003 - protein_coding retained_intron MGP_CASTEiJ_T0064479.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160973425 160974997 - protein_coding retained_intron MGP_CASTEiJ_T0064480.1 MGP_CASTEiJ_G0027168.1 mouse_genomes_project 3 160974060 160979864 - protein_coding retained_intron MGP_CASTEiJ_T0013786.1 MGP_CASTEiJ_G0011949.1 mouse_genomes_project 3 107674271 107675013 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063132.1 MGP_CASTEiJ_G0026929.1 mouse_genomes_project 3 108587116 108602310 - MGP_CASTEiJ_P0063132 Sypl2 protein_coding protein_coding MGP_CASTEiJ_T0063133.1 MGP_CASTEiJ_G0026929.1 mouse_genomes_project 3 108592937 108602305 - Sypl2 protein_coding retained_intron MGP_CASTEiJ_T0062074.1 MGP_CASTEiJ_G0026660.1 mouse_genomes_project 3 91724973 91727519 - MGP_CASTEiJ_P0062074 Sprr3 protein_coding protein_coding MGP_CASTEiJ_T0098924.1 MGP_CASTEiJ_G0035848.1 mouse_genomes_project 3 104927894 104928772 - Gm43846 sense_intronic sense_intronic MGP_CASTEiJ_T0063424.1 MGP_CASTEiJ_G0026987.1 mouse_genomes_project 3 122306675 122341332 + MGP_CASTEiJ_P0063424 Cnn3 protein_coding protein_coding MGP_CASTEiJ_T0063425.1 MGP_CASTEiJ_G0026987.1 mouse_genomes_project 3 122306723 122341324 + Cnn3 protein_coding retained_intron MGP_CASTEiJ_T0063426.1 MGP_CASTEiJ_G0026987.1 mouse_genomes_project 3 122306948 122340936 + MGP_CASTEiJ_P0063426 Cnn3 protein_coding protein_coding MGP_CASTEiJ_T0063427.1 MGP_CASTEiJ_G0026987.1 mouse_genomes_project 3 122307460 122332726 + Cnn3 protein_coding processed_transcript MGP_CASTEiJ_T0063428.1 MGP_CASTEiJ_G0026987.1 mouse_genomes_project 3 122332132 122340268 + MGP_CASTEiJ_P0063428 Cnn3 protein_coding protein_coding MGP_CASTEiJ_T0063429.1 MGP_CASTEiJ_G0026987.1 mouse_genomes_project 3 122333347 122340479 + Cnn3 protein_coding retained_intron MGP_CASTEiJ_T0063430.1 MGP_CASTEiJ_G0026987.1 mouse_genomes_project 3 122340208 122341072 + MGP_CASTEiJ_P0063430 Cnn3 protein_coding protein_coding MGP_CASTEiJ_T0063431.1 MGP_CASTEiJ_G0026987.1 mouse_genomes_project 3 122340237 122341074 + MGP_CASTEiJ_P0063431 Cnn3 protein_coding protein_coding MGP_CASTEiJ_T0064106.1 MGP_CASTEiJ_G0027111.1 mouse_genomes_project 3 147297959 147327005 - MGP_CASTEiJ_P0064106 Clca2 protein_coding protein_coding MGP_CASTEiJ_T0064107.1 MGP_CASTEiJ_G0027111.1 mouse_genomes_project 3 147299574 147327007 - MGP_CASTEiJ_P0064107 Clca2 protein_coding protein_coding MGP_CASTEiJ_T0064108.1 MGP_CASTEiJ_G0027111.1 mouse_genomes_project 3 147326743 147327343 - Clca2 protein_coding processed_transcript MGP_CASTEiJ_T0004072.1 MGP_CASTEiJ_G0003598.1 mouse_genomes_project 3 2393942 2444594 - 2700069I18Rik antisense antisense MGP_CASTEiJ_T0004073.1 MGP_CASTEiJ_G0003598.1 mouse_genomes_project 3 2395338 2444612 - 2700069I18Rik antisense antisense MGP_CASTEiJ_T0062495.1 MGP_CASTEiJ_G0026766.1 mouse_genomes_project 3 95812349 95812935 + MGP_CASTEiJ_P0062495 Hist2h2aa1 protein_coding protein_coding MGP_CASTEiJ_T0102277.1 MGP_CASTEiJ_G0039002.1 mouse_genomes_project 3 79493940 79494091 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0064013.1 MGP_CASTEiJ_G0027092.1 mouse_genomes_project 3 143150260 143152608 - MGP_CASTEiJ_P0064013 Pdha2 protein_coding protein_coding MGP_CASTEiJ_T0007334.1 MGP_CASTEiJ_G0006025.1 mouse_genomes_project 3 39058656 39064351 - Gm16508 lincRNA lincRNA MGP_CASTEiJ_T0010240.1 MGP_CASTEiJ_G0008428.1 mouse_genomes_project 3 88326256 88326338 - Mir1905 miRNA miRNA MGP_CASTEiJ_T0001261.1 MGP_CASTEiJ_G0001192.1 mouse_genomes_project 3 124207069 124209681 - TEC TEC MGP_CASTEiJ_T0060745.1 MGP_CASTEiJ_G0026378.1 mouse_genomes_project 3 52575245 52597386 + Trpc4 protein_coding processed_transcript MGP_CASTEiJ_T0060746.1 MGP_CASTEiJ_G0026378.1 mouse_genomes_project 3 52575267 52750247 + MGP_CASTEiJ_P0060746 Trpc4 protein_coding protein_coding MGP_CASTEiJ_T0060747.1 MGP_CASTEiJ_G0026378.1 mouse_genomes_project 3 52575276 52695375 + Trpc4 protein_coding retained_intron MGP_CASTEiJ_T0060748.1 MGP_CASTEiJ_G0026378.1 mouse_genomes_project 3 52575314 52750243 + MGP_CASTEiJ_P0060748 Trpc4 protein_coding protein_coding MGP_CASTEiJ_T0060749.1 MGP_CASTEiJ_G0026378.1 mouse_genomes_project 3 52575583 52646022 + Trpc4 protein_coding retained_intron MGP_CASTEiJ_T0060750.1 MGP_CASTEiJ_G0026378.1 mouse_genomes_project 3 52575824 52750192 + MGP_CASTEiJ_P0060750 Trpc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060697.1 MGP_CASTEiJ_G0026367.1 mouse_genomes_project 3 49789317 49834664 - MGP_CASTEiJ_P0060697 Setd7 protein_coding protein_coding MGP_CASTEiJ_T0060698.1 MGP_CASTEiJ_G0026367.1 mouse_genomes_project 3 49803931 49810376 - Setd7 protein_coding retained_intron MGP_CASTEiJ_T0060699.1 MGP_CASTEiJ_G0026367.1 mouse_genomes_project 3 49809227 49810857 - Setd7 protein_coding retained_intron MGP_CASTEiJ_T0060700.1 MGP_CASTEiJ_G0026367.1 mouse_genomes_project 3 49822423 49825064 - Setd7 protein_coding retained_intron MGP_CASTEiJ_T0007525.1 MGP_CASTEiJ_G0006170.1 mouse_genomes_project 3 135785353 135785707 + lincRNA lincRNA MGP_CASTEiJ_T0061101.1 MGP_CASTEiJ_G0026455.1 mouse_genomes_project 3 67800944 67832088 + MGP_CASTEiJ_P0061101 Smc4 protein_coding protein_coding MGP_CASTEiJ_T0061102.1 MGP_CASTEiJ_G0026455.1 mouse_genomes_project 3 67801176 67814402 + MGP_CASTEiJ_P0061102 Smc4 protein_coding protein_coding MGP_CASTEiJ_T0061103.1 MGP_CASTEiJ_G0026455.1 mouse_genomes_project 3 67801197 67832083 + MGP_CASTEiJ_P0061103 Smc4 protein_coding protein_coding MGP_CASTEiJ_T0061104.1 MGP_CASTEiJ_G0026455.1 mouse_genomes_project 3 67801214 67832088 + MGP_CASTEiJ_P0061104 Smc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061105.1 MGP_CASTEiJ_G0026455.1 mouse_genomes_project 3 67801221 67824842 + MGP_CASTEiJ_P0061105 Smc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061106.1 MGP_CASTEiJ_G0026455.1 mouse_genomes_project 3 67812788 67814467 + Smc4 protein_coding retained_intron MGP_CASTEiJ_T0061107.1 MGP_CASTEiJ_G0026455.1 mouse_genomes_project 3 67812994 67815586 + Smc4 protein_coding processed_transcript MGP_CASTEiJ_T0061108.1 MGP_CASTEiJ_G0026455.1 mouse_genomes_project 3 67815199 67817818 + Smc4 protein_coding retained_intron MGP_CASTEiJ_T0061109.1 MGP_CASTEiJ_G0026455.1 mouse_genomes_project 3 67818464 67820703 + Smc4 protein_coding retained_intron MGP_CASTEiJ_T0061110.1 MGP_CASTEiJ_G0026455.1 mouse_genomes_project 3 67820595 67824282 + MGP_CASTEiJ_P0061110 Smc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061111.1 MGP_CASTEiJ_G0026455.1 mouse_genomes_project 3 67826745 67830545 + Smc4 protein_coding retained_intron MGP_CASTEiJ_T0007346.1 MGP_CASTEiJ_G0006031.1 mouse_genomes_project 3 46942754 46955195 - Gm37190 lincRNA lincRNA MGP_CASTEiJ_T0013588.1 MGP_CASTEiJ_G0011751.1 mouse_genomes_project 3 42381888 42382297 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102260.1 MGP_CASTEiJ_G0038985.1 mouse_genomes_project 3 18815720 18817419 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0060409.1 MGP_CASTEiJ_G0026318.1 mouse_genomes_project 3 32243347 32245407 + MGP_CASTEiJ_P0060409 Sox2 protein_coding protein_coding MGP_CASTEiJ_T0061985.1 MGP_CASTEiJ_G0026624.1 mouse_genomes_project 3 90383157 90430175 - MGP_CASTEiJ_P0061985 Ints3 protein_coding protein_coding MGP_CASTEiJ_T0061986.1 MGP_CASTEiJ_G0026624.1 mouse_genomes_project 3 90383165 90430401 - MGP_CASTEiJ_P0061986 Ints3 protein_coding protein_coding MGP_CASTEiJ_T0061987.1 MGP_CASTEiJ_G0026624.1 mouse_genomes_project 3 90383845 90396559 - Ints3 protein_coding retained_intron MGP_CASTEiJ_T0061988.1 MGP_CASTEiJ_G0026624.1 mouse_genomes_project 3 90383845 90430485 - MGP_CASTEiJ_P0061988 Ints3 protein_coding protein_coding MGP_CASTEiJ_T0061989.1 MGP_CASTEiJ_G0026624.1 mouse_genomes_project 3 90386135 90394120 - Ints3 protein_coding retained_intron MGP_CASTEiJ_T0061990.1 MGP_CASTEiJ_G0026624.1 mouse_genomes_project 3 90394449 90396019 - Ints3 protein_coding retained_intron MGP_CASTEiJ_T0061991.1 MGP_CASTEiJ_G0026624.1 mouse_genomes_project 3 90401193 90430494 - Ints3 protein_coding retained_intron MGP_CASTEiJ_T0010219.1 MGP_CASTEiJ_G0008407.1 mouse_genomes_project 3 28551200 28551263 + Mir7008 miRNA miRNA MGP_CASTEiJ_T0013541.1 MGP_CASTEiJ_G0011704.1 mouse_genomes_project 3 24586877 24587265 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062263.1 MGP_CASTEiJ_G0026722.1 mouse_genomes_project 3 94572824 94575791 + MGP_CASTEiJ_P0062263 Tmod4 protein_coding protein_coding MGP_CASTEiJ_T0062264.1 MGP_CASTEiJ_G0026722.1 mouse_genomes_project 3 94572862 94577335 + MGP_CASTEiJ_P0062264 Tmod4 protein_coding protein_coding MGP_CASTEiJ_T0062265.1 MGP_CASTEiJ_G0026722.1 mouse_genomes_project 3 94572863 94577331 + MGP_CASTEiJ_P0062265 Tmod4 protein_coding protein_coding MGP_CASTEiJ_T0062266.1 MGP_CASTEiJ_G0026722.1 mouse_genomes_project 3 94574552 94576867 + Tmod4 protein_coding retained_intron MGP_CASTEiJ_T0062267.1 MGP_CASTEiJ_G0026722.1 mouse_genomes_project 3 94575307 94576004 + Tmod4 protein_coding processed_transcript MGP_CASTEiJ_T0062268.1 MGP_CASTEiJ_G0026722.1 mouse_genomes_project 3 94575790 94577334 + Tmod4 protein_coding retained_intron MGP_CASTEiJ_T0013732.1 MGP_CASTEiJ_G0011895.1 mouse_genomes_project 3 92440998 92441130 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013575.1 MGP_CASTEiJ_G0011738.1 mouse_genomes_project 3 37011234 37011504 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100971.1 MGP_CASTEiJ_G0037884.1 mouse_genomes_project 3 85767800 85767871 - Rnu73b snoRNA snoRNA MGP_CASTEiJ_T0004082.1 MGP_CASTEiJ_G0003605.1 mouse_genomes_project 3 28165292 28172124 + Gm15462 antisense antisense MGP_CASTEiJ_T0013570.1 MGP_CASTEiJ_G0011733.1 mouse_genomes_project 3 35486431 35487351 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004277.1 MGP_CASTEiJ_G0003738.1 mouse_genomes_project 3 155621014 155622171 + Gm16213 antisense antisense MGP_CASTEiJ_T0001338.1 MGP_CASTEiJ_G0001268.1 mouse_genomes_project 3 157939419 157942189 + TEC TEC MGP_CASTEiJ_T0013488.1 MGP_CASTEiJ_G0011651.1 mouse_genomes_project 3 7674153 7674332 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098925.1 MGP_CASTEiJ_G0035849.1 mouse_genomes_project 3 105503040 105504992 + Gm43847 sense_intronic sense_intronic MGP_CASTEiJ_T0007544.1 MGP_CASTEiJ_G0006188.1 mouse_genomes_project 3 145208297 145265054 + Gm43614 lincRNA lincRNA MGP_CASTEiJ_T0061328.1 MGP_CASTEiJ_G0026507.1 mouse_genomes_project 3 84024230 84117223 - MGP_CASTEiJ_P0061328 protein_coding protein_coding MGP_CASTEiJ_T0061330.1 MGP_CASTEiJ_G0026507.1 mouse_genomes_project 3 84025342 84117174 - MGP_CASTEiJ_P0061330 protein_coding protein_coding MGP_CASTEiJ_T0061331.1 MGP_CASTEiJ_G0026507.1 mouse_genomes_project 3 84025874 84117314 - MGP_CASTEiJ_P0061331 protein_coding protein_coding MGP_CASTEiJ_T0062688.1 MGP_CASTEiJ_G0026824.1 mouse_genomes_project 3 100172098 100212420 - Fam46c protein_coding processed_transcript MGP_CASTEiJ_T0062689.1 MGP_CASTEiJ_G0026824.1 mouse_genomes_project 3 100172101 100212416 - Fam46c protein_coding processed_transcript MGP_CASTEiJ_T0062690.1 MGP_CASTEiJ_G0026824.1 mouse_genomes_project 3 100189923 100212546 - MGP_CASTEiJ_P0062690 Fam46c protein_coding protein_coding MGP_CASTEiJ_T0098883.1 MGP_CASTEiJ_G0035807.1 mouse_genomes_project 3 94000462 94001721 - Gm43768 sense_intronic sense_intronic MGP_CASTEiJ_T0063785.1 MGP_CASTEiJ_G0027051.1 mouse_genomes_project 3 134541684 134656777 - MGP_CASTEiJ_P0063785 Gstcd protein_coding protein_coding MGP_CASTEiJ_T0063786.1 MGP_CASTEiJ_G0027051.1 mouse_genomes_project 3 134542698 134656985 - MGP_CASTEiJ_P0063786 Gstcd protein_coding protein_coding MGP_CASTEiJ_T0063787.1 MGP_CASTEiJ_G0027051.1 mouse_genomes_project 3 134552185 134563412 - Gstcd protein_coding retained_intron MGP_CASTEiJ_T0063788.1 MGP_CASTEiJ_G0027051.1 mouse_genomes_project 3 134556290 134656699 - Gstcd protein_coding processed_transcript MGP_CASTEiJ_T0063789.1 MGP_CASTEiJ_G0027051.1 mouse_genomes_project 3 134639805 134656730 - Gstcd protein_coding retained_intron MGP_CASTEiJ_T0063790.1 MGP_CASTEiJ_G0027051.1 mouse_genomes_project 3 134640001 134641706 - Gstcd protein_coding retained_intron MGP_CASTEiJ_T0013471.1 MGP_CASTEiJ_G0011634.1 mouse_genomes_project 3 3804702 3804961 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010260.1 MGP_CASTEiJ_G0008448.1 mouse_genomes_project 3 123231985 123232104 - Mir760 miRNA miRNA MGP_CASTEiJ_T0001069.1 MGP_CASTEiJ_G0001002.1 mouse_genomes_project 3 15512933 15517769 + TEC TEC MGP_CASTEiJ_T0099703.1 MGP_CASTEiJ_G0036616.1 mouse_genomes_project 3 64281613 64281706 + Gm22279 snRNA snRNA MGP_CASTEiJ_T0099690.1 MGP_CASTEiJ_G0036603.1 mouse_genomes_project 3 43776904 43777067 + Gm25796 snRNA snRNA MGP_CASTEiJ_T0013826.1 MGP_CASTEiJ_G0011989.1 mouse_genomes_project 3 122034479 122040584 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013716.1 MGP_CASTEiJ_G0011879.1 mouse_genomes_project 3 86723070 86723379 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061125.1 MGP_CASTEiJ_G0026461.1 mouse_genomes_project 3 68571484 68573961 + Nmd3 protein_coding retained_intron MGP_CASTEiJ_T0061126.1 MGP_CASTEiJ_G0026461.1 mouse_genomes_project 3 68571484 68609326 + MGP_CASTEiJ_P0061126 Nmd3 protein_coding protein_coding MGP_CASTEiJ_T0061127.1 MGP_CASTEiJ_G0026461.1 mouse_genomes_project 3 68571531 68584542 + MGP_CASTEiJ_P0061127 Nmd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061128.1 MGP_CASTEiJ_G0026461.1 mouse_genomes_project 3 68571582 68580032 + MGP_CASTEiJ_P0061128 Nmd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061129.1 MGP_CASTEiJ_G0026461.1 mouse_genomes_project 3 68571589 68581473 + Nmd3 protein_coding retained_intron MGP_CASTEiJ_T0061130.1 MGP_CASTEiJ_G0026461.1 mouse_genomes_project 3 68571754 68575908 + MGP_CASTEiJ_P0061130 Nmd3 protein_coding protein_coding MGP_CASTEiJ_T0061131.1 MGP_CASTEiJ_G0026461.1 mouse_genomes_project 3 68573733 68589313 + Nmd3 protein_coding retained_intron MGP_CASTEiJ_T0061132.1 MGP_CASTEiJ_G0026461.1 mouse_genomes_project 3 68595665 68598264 + Nmd3 protein_coding retained_intron MGP_CASTEiJ_T0004159.1 MGP_CASTEiJ_G0003661.1 mouse_genomes_project 3 91302048 91308167 + Gm43735 antisense antisense MGP_CASTEiJ_T0007315.1 MGP_CASTEiJ_G0006009.1 mouse_genomes_project 3 32872101 32892972 - Gm43003 lincRNA lincRNA MGP_CASTEiJ_T0063283.1 MGP_CASTEiJ_G0026960.1 mouse_genomes_project 3 116231942 116239146 - MGP_CASTEiJ_P0063283 S1pr1 protein_coding protein_coding MGP_CASTEiJ_T0013905.1 MGP_CASTEiJ_G0012068.1 mouse_genomes_project 3 147028946 147029573 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001163.1 MGP_CASTEiJ_G0001094.1 mouse_genomes_project 3 51884909 51886074 + TEC TEC MGP_CASTEiJ_T0063495.1 MGP_CASTEiJ_G0027001.1 mouse_genomes_project 3 123919471 123959183 - MGP_CASTEiJ_P0063495 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063496.1 MGP_CASTEiJ_G0027001.1 mouse_genomes_project 3 123932999 123935422 - protein_coding retained_intron MGP_CASTEiJ_T0063497.1 MGP_CASTEiJ_G0027001.1 mouse_genomes_project 3 123937089 123973244 - MGP_CASTEiJ_P0063497 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063498.1 MGP_CASTEiJ_G0027001.1 mouse_genomes_project 3 123938443 123973427 - MGP_CASTEiJ_P0063498 protein_coding protein_coding MGP_CASTEiJ_T0063499.1 MGP_CASTEiJ_G0027001.1 mouse_genomes_project 3 123941346 123973425 - MGP_CASTEiJ_P0063499 protein_coding protein_coding MGP_CASTEiJ_T0063500.1 MGP_CASTEiJ_G0027001.1 mouse_genomes_project 3 123946019 123973431 - protein_coding retained_intron MGP_CASTEiJ_T0063501.1 MGP_CASTEiJ_G0027001.1 mouse_genomes_project 3 123947844 123950244 - protein_coding retained_intron MGP_CASTEiJ_T0063502.1 MGP_CASTEiJ_G0027001.1 mouse_genomes_project 3 123947887 123973392 - MGP_CASTEiJ_P0063502 protein_coding protein_coding MGP_CASTEiJ_T0063503.1 MGP_CASTEiJ_G0027001.1 mouse_genomes_project 3 123948554 123951987 - protein_coding retained_intron MGP_CASTEiJ_T0063504.1 MGP_CASTEiJ_G0027001.1 mouse_genomes_project 3 123956766 123972817 - protein_coding retained_intron MGP_CASTEiJ_T0001117.1 MGP_CASTEiJ_G0001050.1 mouse_genomes_project 3 39433137 39434060 - TEC TEC MGP_CASTEiJ_T0064380.1 MGP_CASTEiJ_G0027154.1 mouse_genomes_project 3 156696254 156717893 - MGP_CASTEiJ_P0064380 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064381.1 MGP_CASTEiJ_G0027154.1 mouse_genomes_project 3 156698682 156703201 - protein_coding retained_intron MGP_CASTEiJ_T0064382.1 MGP_CASTEiJ_G0027154.1 mouse_genomes_project 3 156698823 156711280 - protein_coding retained_intron MGP_CASTEiJ_T0064383.1 MGP_CASTEiJ_G0027154.1 mouse_genomes_project 3 156703182 156710259 - protein_coding retained_intron MGP_CASTEiJ_T0064384.1 MGP_CASTEiJ_G0027154.1 mouse_genomes_project 3 156709773 156712144 - protein_coding retained_intron MGP_CASTEiJ_T0064385.1 MGP_CASTEiJ_G0027154.1 mouse_genomes_project 3 156709779 156717935 - MGP_CASTEiJ_P0064385 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064386.1 MGP_CASTEiJ_G0027154.1 mouse_genomes_project 3 156709833 156717914 - MGP_CASTEiJ_P0064386 protein_coding protein_coding MGP_CASTEiJ_T0064387.1 MGP_CASTEiJ_G0027154.1 mouse_genomes_project 3 156711765 156717910 - protein_coding retained_intron MGP_CASTEiJ_T0064388.1 MGP_CASTEiJ_G0027154.1 mouse_genomes_project 3 156712126 156715358 - protein_coding retained_intron MGP_CASTEiJ_T0064389.1 MGP_CASTEiJ_G0027154.1 mouse_genomes_project 3 156715055 156717931 - protein_coding retained_intron MGP_CASTEiJ_T0004203.1 MGP_CASTEiJ_G0003691.1 mouse_genomes_project 3 108240839 108249874 - 4933431E20Rik antisense antisense MGP_CASTEiJ_T0004204.1 MGP_CASTEiJ_G0003691.1 mouse_genomes_project 3 108243568 108249427 - 4933431E20Rik antisense antisense MGP_CASTEiJ_T0004205.1 MGP_CASTEiJ_G0003691.1 mouse_genomes_project 3 108245011 108249459 - 4933431E20Rik antisense antisense MGP_CASTEiJ_T0004206.1 MGP_CASTEiJ_G0003691.1 mouse_genomes_project 3 108246404 108249353 - 4933431E20Rik antisense antisense MGP_CASTEiJ_T0004207.1 MGP_CASTEiJ_G0003691.1 mouse_genomes_project 3 108246435 108249434 - 4933431E20Rik antisense antisense MGP_CASTEiJ_T0004208.1 MGP_CASTEiJ_G0003691.1 mouse_genomes_project 3 108246664 108249470 - 4933431E20Rik antisense antisense MGP_CASTEiJ_T0004209.1 MGP_CASTEiJ_G0003691.1 mouse_genomes_project 3 108246763 108249435 - 4933431E20Rik antisense antisense MGP_CASTEiJ_T0004210.1 MGP_CASTEiJ_G0003691.1 mouse_genomes_project 3 108246807 108249444 - 4933431E20Rik antisense antisense MGP_CASTEiJ_T0004211.1 MGP_CASTEiJ_G0003691.1 mouse_genomes_project 3 108246959 108249450 - 4933431E20Rik antisense antisense MGP_CASTEiJ_T0004212.1 MGP_CASTEiJ_G0003691.1 mouse_genomes_project 3 108247013 108249461 - 4933431E20Rik antisense antisense MGP_CASTEiJ_T0004213.1 MGP_CASTEiJ_G0003691.1 mouse_genomes_project 3 108247043 108249424 - 4933431E20Rik antisense antisense MGP_CASTEiJ_T0004214.1 MGP_CASTEiJ_G0003691.1 mouse_genomes_project 3 108247669 108249473 - 4933431E20Rik antisense antisense MGP_CASTEiJ_T0007290.1 MGP_CASTEiJ_G0005986.1 mouse_genomes_project 3 17758127 17761198 - lincRNA lincRNA MGP_CASTEiJ_T0064413.1 MGP_CASTEiJ_G0027159.1 mouse_genomes_project 3 157475556 157585885 + MGP_CASTEiJ_P0064413 protein_coding protein_coding MGP_CASTEiJ_T0064414.1 MGP_CASTEiJ_G0027159.1 mouse_genomes_project 3 157522623 157564982 + MGP_CASTEiJ_P0064414 protein_coding protein_coding MGP_CASTEiJ_T0064415.1 MGP_CASTEiJ_G0027159.1 mouse_genomes_project 3 157523370 157525604 + protein_coding processed_transcript MGP_CASTEiJ_T0064416.1 MGP_CASTEiJ_G0027159.1 mouse_genomes_project 3 157542243 157582106 + MGP_CASTEiJ_P0064416 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064417.1 MGP_CASTEiJ_G0027159.1 mouse_genomes_project 3 157581556 157585884 + MGP_CASTEiJ_P0064417 protein_coding protein_coding MGP_CASTEiJ_T0063375.1 MGP_CASTEiJ_G0026979.1 mouse_genomes_project 3 117948400 117992952 - MGP_CASTEiJ_P0063375 Plppr4 protein_coding protein_coding MGP_CASTEiJ_T0063376.1 MGP_CASTEiJ_G0026979.1 mouse_genomes_project 3 117951050 117992952 - Plppr4 protein_coding retained_intron MGP_CASTEiJ_T0063377.1 MGP_CASTEiJ_G0026979.1 mouse_genomes_project 3 117951854 117992324 - MGP_CASTEiJ_P0063377 Plppr4 protein_coding protein_coding MGP_CASTEiJ_T0060028.1 MGP_CASTEiJ_G0026243.1 mouse_genomes_project 3 11903090 11925237 + MGP_CASTEiJ_P0060028 Slc7a12 protein_coding protein_coding MGP_CASTEiJ_T0060029.1 MGP_CASTEiJ_G0026243.1 mouse_genomes_project 3 11903093 11925133 + MGP_CASTEiJ_P0060029 Slc7a12 protein_coding protein_coding MGP_CASTEiJ_T0060030.1 MGP_CASTEiJ_G0026243.1 mouse_genomes_project 3 11903166 11925133 + MGP_CASTEiJ_P0060030 Slc7a12 protein_coding protein_coding MGP_CASTEiJ_T0004156.1 MGP_CASTEiJ_G0003658.1 mouse_genomes_project 3 89860593 89861731 + Gm42809 antisense antisense MGP_CASTEiJ_T0063243.1 MGP_CASTEiJ_G0026953.1 mouse_genomes_project 3 110264280 110619936 - MGP_CASTEiJ_P0063243 Ntng1 protein_coding protein_coding MGP_CASTEiJ_T0063244.1 MGP_CASTEiJ_G0026953.1 mouse_genomes_project 3 110264286 110620939 - MGP_CASTEiJ_P0063244 Ntng1 protein_coding protein_coding MGP_CASTEiJ_T0063245.1 MGP_CASTEiJ_G0026953.1 mouse_genomes_project 3 110265355 110620403 - MGP_CASTEiJ_P0063245 Ntng1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063246.1 MGP_CASTEiJ_G0026953.1 mouse_genomes_project 3 110266922 110612435 - MGP_CASTEiJ_P0063246 Ntng1 protein_coding protein_coding MGP_CASTEiJ_T0063247.1 MGP_CASTEiJ_G0026953.1 mouse_genomes_project 3 110266922 110612435 - MGP_CASTEiJ_P0063247 Ntng1 protein_coding protein_coding MGP_CASTEiJ_T0063248.1 MGP_CASTEiJ_G0026953.1 mouse_genomes_project 3 110266922 110612435 - MGP_CASTEiJ_P0063248 Ntng1 protein_coding protein_coding MGP_CASTEiJ_T0063249.1 MGP_CASTEiJ_G0026953.1 mouse_genomes_project 3 110266922 110612435 - MGP_CASTEiJ_P0063249 Ntng1 protein_coding protein_coding MGP_CASTEiJ_T0063250.1 MGP_CASTEiJ_G0026953.1 mouse_genomes_project 3 110266922 110621008 - MGP_CASTEiJ_P0063250 Ntng1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063251.1 MGP_CASTEiJ_G0026953.1 mouse_genomes_project 3 110266922 110612435 - MGP_CASTEiJ_P0063251 Ntng1 protein_coding protein_coding MGP_CASTEiJ_T0063252.1 MGP_CASTEiJ_G0026953.1 mouse_genomes_project 3 110266922 110612435 - MGP_CASTEiJ_P0063252 Ntng1 protein_coding protein_coding MGP_CASTEiJ_T0063253.1 MGP_CASTEiJ_G0026953.1 mouse_genomes_project 3 110319072 110321396 - Ntng1 protein_coding retained_intron MGP_CASTEiJ_T0063254.1 MGP_CASTEiJ_G0026953.1 mouse_genomes_project 3 110319072 110612395 - Ntng1 protein_coding retained_intron MGP_CASTEiJ_T0063255.1 MGP_CASTEiJ_G0026953.1 mouse_genomes_project 3 110620612 110620939 - MGP_CASTEiJ_P0063255 Ntng1 protein_coding protein_coding MGP_CASTEiJ_T0013852.1 MGP_CASTEiJ_G0012015.1 mouse_genomes_project 3 130340521 130341841 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001154.1 MGP_CASTEiJ_G0001085.1 mouse_genomes_project 3 50292355 50295654 - TEC TEC MGP_CASTEiJ_T0060554.1 MGP_CASTEiJ_G0026344.1 mouse_genomes_project 3 36656620 36795390 + MGP_CASTEiJ_P0060554 Fat4 protein_coding protein_coding MGP_CASTEiJ_T0060555.1 MGP_CASTEiJ_G0026344.1 mouse_genomes_project 3 36660622 36731572 + Fat4 protein_coding retained_intron MGP_CASTEiJ_T0004102.1 MGP_CASTEiJ_G0003617.1 mouse_genomes_project 3 34951094 34952831 + Gm12534 antisense antisense MGP_CASTEiJ_T0061860.1 MGP_CASTEiJ_G0026606.1 mouse_genomes_project 3 89684540 89702882 - MGP_CASTEiJ_P0061860 Chrnb2 protein_coding protein_coding MGP_CASTEiJ_T0061861.1 MGP_CASTEiJ_G0026606.1 mouse_genomes_project 3 89690695 89701675 - Chrnb2 protein_coding processed_transcript MGP_CASTEiJ_T0061862.1 MGP_CASTEiJ_G0026606.1 mouse_genomes_project 3 89691722 89703969 - MGP_CASTEiJ_P0061862 Chrnb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0062764.1 MGP_CASTEiJ_G0026844.1 mouse_genomes_project 3 102785029 102812991 - MGP_CASTEiJ_P0062764 Nr1h5 protein_coding protein_coding MGP_CASTEiJ_T0062765.1 MGP_CASTEiJ_G0026844.1 mouse_genomes_project 3 102786241 102807344 - MGP_CASTEiJ_P0062765 Nr1h5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062766.1 MGP_CASTEiJ_G0026844.1 mouse_genomes_project 3 102786241 102807344 - MGP_CASTEiJ_P0062766 Nr1h5 protein_coding protein_coding MGP_CASTEiJ_T0062767.1 MGP_CASTEiJ_G0026844.1 mouse_genomes_project 3 102786241 102807344 - MGP_CASTEiJ_P0062767 Nr1h5 protein_coding protein_coding MGP_CASTEiJ_T0062768.1 MGP_CASTEiJ_G0026844.1 mouse_genomes_project 3 102786241 102807344 - MGP_CASTEiJ_P0062768 Nr1h5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013842.1 MGP_CASTEiJ_G0012005.1 mouse_genomes_project 3 125303768 125304015 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060306.1 MGP_CASTEiJ_G0026301.1 mouse_genomes_project 3 28724015 28836101 - MGP_CASTEiJ_P0060306 Slc7a14 protein_coding protein_coding MGP_CASTEiJ_T0060307.1 MGP_CASTEiJ_G0026301.1 mouse_genomes_project 3 28746232 28781432 - MGP_CASTEiJ_P0060307 Slc7a14 protein_coding protein_coding MGP_CASTEiJ_T0001344.1 MGP_CASTEiJ_G0001274.1 mouse_genomes_project 3 160115897 160117095 - TEC TEC MGP_CASTEiJ_T0062712.1 MGP_CASTEiJ_G0026831.1 mouse_genomes_project 3 101035750 101047760 - MGP_CASTEiJ_P0062712 Cd2 protein_coding protein_coding MGP_CASTEiJ_T0062713.1 MGP_CASTEiJ_G0026831.1 mouse_genomes_project 3 101035759 101040235 - Cd2 protein_coding retained_intron MGP_CASTEiJ_T0062714.1 MGP_CASTEiJ_G0026831.1 mouse_genomes_project 3 101042884 101047700 - Cd2 protein_coding retained_intron MGP_CASTEiJ_T0060760.1 MGP_CASTEiJ_G0026380.1 mouse_genomes_project 3 53155409 53192408 + MGP_CASTEiJ_P0060760 Supt20 protein_coding protein_coding MGP_CASTEiJ_T0060761.1 MGP_CASTEiJ_G0026380.1 mouse_genomes_project 3 53155425 53192536 + MGP_CASTEiJ_P0060761 Supt20 protein_coding protein_coding MGP_CASTEiJ_T0060762.1 MGP_CASTEiJ_G0026380.1 mouse_genomes_project 3 53155425 53192536 + MGP_CASTEiJ_P0060762 Supt20 protein_coding protein_coding MGP_CASTEiJ_T0060763.1 MGP_CASTEiJ_G0026380.1 mouse_genomes_project 3 53155427 53192540 + MGP_CASTEiJ_P0060763 Supt20 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060764.1 MGP_CASTEiJ_G0026380.1 mouse_genomes_project 3 53155437 53170017 + MGP_CASTEiJ_P0060764 Supt20 protein_coding protein_coding MGP_CASTEiJ_T0060765.1 MGP_CASTEiJ_G0026380.1 mouse_genomes_project 3 53155460 53175961 + Supt20 protein_coding retained_intron MGP_CASTEiJ_T0060766.1 MGP_CASTEiJ_G0026380.1 mouse_genomes_project 3 53155460 53159406 + Supt20 protein_coding retained_intron MGP_CASTEiJ_T0060767.1 MGP_CASTEiJ_G0026380.1 mouse_genomes_project 3 53155460 53158452 + Supt20 protein_coding retained_intron MGP_CASTEiJ_T0060768.1 MGP_CASTEiJ_G0026380.1 mouse_genomes_project 3 53155464 53170248 + MGP_CASTEiJ_P0060768 Supt20 protein_coding protein_coding MGP_CASTEiJ_T0060769.1 MGP_CASTEiJ_G0026380.1 mouse_genomes_project 3 53155707 53180038 + MGP_CASTEiJ_P0060769 Supt20 protein_coding protein_coding MGP_CASTEiJ_T0060770.1 MGP_CASTEiJ_G0026380.1 mouse_genomes_project 3 53155715 53192537 + MGP_CASTEiJ_P0060770 Supt20 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060771.1 MGP_CASTEiJ_G0026380.1 mouse_genomes_project 3 53175448 53177556 + Supt20 protein_coding retained_intron MGP_CASTEiJ_T0013897.1 MGP_CASTEiJ_G0012060.1 mouse_genomes_project 3 142781697 142782061 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062335.1 MGP_CASTEiJ_G0026735.1 mouse_genomes_project 3 94765189 94776581 - MGP_CASTEiJ_P0062335 Anxa9 protein_coding protein_coding MGP_CASTEiJ_T0062336.1 MGP_CASTEiJ_G0026735.1 mouse_genomes_project 3 94765189 94776209 - MGP_CASTEiJ_P0062336 Anxa9 protein_coding protein_coding MGP_CASTEiJ_T0062337.1 MGP_CASTEiJ_G0026735.1 mouse_genomes_project 3 94765391 94776209 - MGP_CASTEiJ_P0062337 Anxa9 protein_coding protein_coding MGP_CASTEiJ_T0062338.1 MGP_CASTEiJ_G0026735.1 mouse_genomes_project 3 94775337 94776209 - MGP_CASTEiJ_P0062338 Anxa9 protein_coding protein_coding MGP_CASTEiJ_T0001326.1 MGP_CASTEiJ_G0001256.1 mouse_genomes_project 3 154831258 154832373 + TEC TEC MGP_CASTEiJ_T0013917.1 MGP_CASTEiJ_G0012080.1 mouse_genomes_project 3 154819359 154820029 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061632.1 MGP_CASTEiJ_G0026567.1 mouse_genomes_project 3 88471426 88504948 + MGP_CASTEiJ_P0061632 2810403A07Rik protein_coding protein_coding MGP_CASTEiJ_T0061633.1 MGP_CASTEiJ_G0026567.1 mouse_genomes_project 3 88471437 88473670 + 2810403A07Rik protein_coding retained_intron MGP_CASTEiJ_T0061634.1 MGP_CASTEiJ_G0026567.1 mouse_genomes_project 3 88471450 88504586 + MGP_CASTEiJ_P0061634 2810403A07Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061635.1 MGP_CASTEiJ_G0026567.1 mouse_genomes_project 3 88471450 88504878 + MGP_CASTEiJ_P0061635 2810403A07Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061636.1 MGP_CASTEiJ_G0026567.1 mouse_genomes_project 3 88471456 88491242 + 2810403A07Rik protein_coding retained_intron MGP_CASTEiJ_T0061637.1 MGP_CASTEiJ_G0026567.1 mouse_genomes_project 3 88471460 88504027 + MGP_CASTEiJ_P0061637 2810403A07Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061638.1 MGP_CASTEiJ_G0026567.1 mouse_genomes_project 3 88478935 88500931 + 2810403A07Rik protein_coding processed_transcript MGP_CASTEiJ_T0061639.1 MGP_CASTEiJ_G0026567.1 mouse_genomes_project 3 88488477 88490551 + 2810403A07Rik protein_coding retained_intron MGP_CASTEiJ_T0061640.1 MGP_CASTEiJ_G0026567.1 mouse_genomes_project 3 88489274 88501010 + 2810403A07Rik protein_coding retained_intron MGP_CASTEiJ_T0061641.1 MGP_CASTEiJ_G0026567.1 mouse_genomes_project 3 88500802 88503109 + 2810403A07Rik protein_coding processed_transcript MGP_CASTEiJ_T0007537.1 MGP_CASTEiJ_G0006182.1 mouse_genomes_project 3 141603950 141607523 - Gm32693 lincRNA lincRNA MGP_CASTEiJ_T0062455.1 MGP_CASTEiJ_G0026755.1 mouse_genomes_project 3 95457897 95478004 + MGP_CASTEiJ_P0062455 Anp32e protein_coding protein_coding MGP_CASTEiJ_T0062456.1 MGP_CASTEiJ_G0026755.1 mouse_genomes_project 3 95457902 95478074 + MGP_CASTEiJ_P0062456 Anp32e protein_coding protein_coding MGP_CASTEiJ_T0062457.1 MGP_CASTEiJ_G0026755.1 mouse_genomes_project 3 95457944 95477881 + MGP_CASTEiJ_P0062457 Anp32e protein_coding protein_coding MGP_CASTEiJ_T0062458.1 MGP_CASTEiJ_G0026755.1 mouse_genomes_project 3 95458160 95477986 + MGP_CASTEiJ_P0062458 Anp32e protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062459.1 MGP_CASTEiJ_G0026755.1 mouse_genomes_project 3 95458201 95477757 + MGP_CASTEiJ_P0062459 Anp32e protein_coding protein_coding MGP_CASTEiJ_T0062460.1 MGP_CASTEiJ_G0026755.1 mouse_genomes_project 3 95458216 95479830 + MGP_CASTEiJ_P0062460 Anp32e protein_coding protein_coding MGP_CASTEiJ_T0062461.1 MGP_CASTEiJ_G0026755.1 mouse_genomes_project 3 95459155 95468131 + MGP_CASTEiJ_P0062461 Anp32e protein_coding protein_coding MGP_CASTEiJ_T0062462.1 MGP_CASTEiJ_G0026755.1 mouse_genomes_project 3 95476650 95477962 + Anp32e protein_coding retained_intron MGP_CASTEiJ_T0062092.1 MGP_CASTEiJ_G0026676.1 mouse_genomes_project 3 92062386 92064013 - MGP_CASTEiJ_P0062092 Lce1i protein_coding protein_coding MGP_CASTEiJ_T0060932.1 MGP_CASTEiJ_G0026421.1 mouse_genomes_project 3 58746861 58753507 + MGP_CASTEiJ_P0060932 Sucnr1 protein_coding protein_coding MGP_CASTEiJ_T0060933.1 MGP_CASTEiJ_G0026421.1 mouse_genomes_project 3 58746894 58752266 + Sucnr1 protein_coding processed_transcript MGP_CASTEiJ_T0013590.1 MGP_CASTEiJ_G0011753.1 mouse_genomes_project 3 43241504 43241754 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099692.1 MGP_CASTEiJ_G0036605.1 mouse_genomes_project 3 47153167 47153331 + Gm23511 snRNA snRNA MGP_CASTEiJ_T0007454.1 MGP_CASTEiJ_G0006114.1 mouse_genomes_project 3 102096487 102275487 + A230001M10Rik lincRNA lincRNA MGP_CASTEiJ_T0007455.1 MGP_CASTEiJ_G0006114.1 mouse_genomes_project 3 102096604 102124046 + A230001M10Rik lincRNA lincRNA MGP_CASTEiJ_T0007456.1 MGP_CASTEiJ_G0006114.1 mouse_genomes_project 3 102096920 102123251 + A230001M10Rik lincRNA lincRNA MGP_CASTEiJ_T0100938.1 MGP_CASTEiJ_G0037851.1 mouse_genomes_project 3 4691399 4691516 - Gm23592 snoRNA snoRNA MGP_CASTEiJ_T0007542.1 MGP_CASTEiJ_G0006186.1 mouse_genomes_project 3 144980580 144994844 + 9530052C20Rik lincRNA lincRNA MGP_CASTEiJ_T0062492.1 MGP_CASTEiJ_G0026763.1 mouse_genomes_project 3 95759094 95759549 + MGP_CASTEiJ_P0062492 Hist2h2ab protein_coding protein_coding MGP_CASTEiJ_T0013527.1 MGP_CASTEiJ_G0011690.1 mouse_genomes_project 3 18052263 18053878 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001112.1 MGP_CASTEiJ_G0001045.1 mouse_genomes_project 3 35762758 35763318 + TEC TEC MGP_CASTEiJ_T0013558.1 MGP_CASTEiJ_G0011721.1 mouse_genomes_project 3 33612446 33612768 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060536.1 MGP_CASTEiJ_G0026340.1 mouse_genomes_project 3 35139080 35302509 + MGP_CASTEiJ_P0060536 Spata5 protein_coding protein_coding MGP_CASTEiJ_T0060537.1 MGP_CASTEiJ_G0026340.1 mouse_genomes_project 3 35139494 35302509 + MGP_CASTEiJ_P0060537 Spata5 protein_coding protein_coding MGP_CASTEiJ_T0060538.1 MGP_CASTEiJ_G0026340.1 mouse_genomes_project 3 35139508 35302509 + MGP_CASTEiJ_P0060538 Spata5 protein_coding protein_coding MGP_CASTEiJ_T0060539.1 MGP_CASTEiJ_G0026340.1 mouse_genomes_project 3 35139569 35144607 + Spata5 protein_coding processed_transcript MGP_CASTEiJ_T0060540.1 MGP_CASTEiJ_G0026340.1 mouse_genomes_project 3 35140060 35145370 + Spata5 protein_coding processed_transcript MGP_CASTEiJ_T0060541.1 MGP_CASTEiJ_G0026340.1 mouse_genomes_project 3 35151328 35158419 + Spata5 protein_coding processed_transcript MGP_CASTEiJ_T0060542.1 MGP_CASTEiJ_G0026340.1 mouse_genomes_project 3 35155833 35158539 + Spata5 protein_coding retained_intron MGP_CASTEiJ_T0060543.1 MGP_CASTEiJ_G0026340.1 mouse_genomes_project 3 35174686 35252831 + Spata5 protein_coding retained_intron MGP_CASTEiJ_T0060544.1 MGP_CASTEiJ_G0026340.1 mouse_genomes_project 3 35218575 35302422 + Spata5 protein_coding processed_transcript MGP_CASTEiJ_T0060545.1 MGP_CASTEiJ_G0026340.1 mouse_genomes_project 3 35297058 35302503 + Spata5 protein_coding processed_transcript MGP_CASTEiJ_T0013916.1 MGP_CASTEiJ_G0012079.1 mouse_genomes_project 3 154729244 154729800 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013543.1 MGP_CASTEiJ_G0011706.1 mouse_genomes_project 3 25632519 25632763 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100961.1 MGP_CASTEiJ_G0037874.1 mouse_genomes_project 3 63643885 63644011 - Gm25222 snoRNA snoRNA MGP_CASTEiJ_T0013553.1 MGP_CASTEiJ_G0011716.1 mouse_genomes_project 3 31639231 31642979 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013629.1 MGP_CASTEiJ_G0011792.1 mouse_genomes_project 3 57249532 57250639 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004241.1 MGP_CASTEiJ_G0003713.1 mouse_genomes_project 3 129083278 129085011 + Gm43653 antisense antisense MGP_CASTEiJ_T0064095.1 MGP_CASTEiJ_G0027107.1 mouse_genomes_project 3 146839799 146880360 - MGP_CASTEiJ_P0064095 Sh3glb1 protein_coding protein_coding MGP_CASTEiJ_T0064096.1 MGP_CASTEiJ_G0027107.1 mouse_genomes_project 3 146841023 146855358 - MGP_CASTEiJ_P0064096 Sh3glb1 protein_coding protein_coding MGP_CASTEiJ_T0064097.1 MGP_CASTEiJ_G0027107.1 mouse_genomes_project 3 146844745 146880573 - MGP_CASTEiJ_P0064097 Sh3glb1 protein_coding protein_coding MGP_CASTEiJ_T0064098.1 MGP_CASTEiJ_G0027107.1 mouse_genomes_project 3 146846687 146880582 - MGP_CASTEiJ_P0064098 Sh3glb1 protein_coding protein_coding MGP_CASTEiJ_T0064099.1 MGP_CASTEiJ_G0027107.1 mouse_genomes_project 3 146849206 146880455 - MGP_CASTEiJ_P0064099 Sh3glb1 protein_coding protein_coding MGP_CASTEiJ_T0064100.1 MGP_CASTEiJ_G0027107.1 mouse_genomes_project 3 146849839 146864520 - MGP_CASTEiJ_P0064100 Sh3glb1 protein_coding protein_coding MGP_CASTEiJ_T0061202.1 MGP_CASTEiJ_G0026478.1 mouse_genomes_project 3 78879780 78908626 - MGP_CASTEiJ_P0061202 Etfdh protein_coding protein_coding MGP_CASTEiJ_T0061203.1 MGP_CASTEiJ_G0026478.1 mouse_genomes_project 3 78879797 78908460 - MGP_CASTEiJ_P0061203 Etfdh protein_coding protein_coding MGP_CASTEiJ_T0061204.1 MGP_CASTEiJ_G0026478.1 mouse_genomes_project 3 78895657 78908446 - Etfdh protein_coding retained_intron MGP_CASTEiJ_T0061205.1 MGP_CASTEiJ_G0026478.1 mouse_genomes_project 3 78897207 78908626 - Etfdh protein_coding retained_intron MGP_CASTEiJ_T0061206.1 MGP_CASTEiJ_G0026478.1 mouse_genomes_project 3 78899312 78908481 - Etfdh protein_coding retained_intron MGP_CASTEiJ_T0061207.1 MGP_CASTEiJ_G0026478.1 mouse_genomes_project 3 78908011 78909263 - Etfdh protein_coding retained_intron MGP_CASTEiJ_T0061208.1 MGP_CASTEiJ_G0026478.1 mouse_genomes_project 3 78908029 78908502 - Etfdh protein_coding processed_transcript MGP_CASTEiJ_T0013753.1 MGP_CASTEiJ_G0011916.1 mouse_genomes_project 3 96721449 96722052 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098589.1 MGP_CASTEiJ_G0035520.1 mouse_genomes_project 3 37437757 37437876 - n-R5s195 rRNA rRNA MGP_CASTEiJ_T0062868.1 MGP_CASTEiJ_G0026862.1 mouse_genomes_project 3 103888098 103928980 + MGP_CASTEiJ_P0062868 Phtf1 protein_coding protein_coding MGP_CASTEiJ_T0062869.1 MGP_CASTEiJ_G0026862.1 mouse_genomes_project 3 103888246 103928980 + MGP_CASTEiJ_P0062869 Phtf1 protein_coding protein_coding MGP_CASTEiJ_T0062870.1 MGP_CASTEiJ_G0026862.1 mouse_genomes_project 3 103888354 103947094 + MGP_CASTEiJ_P0062870 Phtf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062871.1 MGP_CASTEiJ_G0026862.1 mouse_genomes_project 3 103888356 103928982 + MGP_CASTEiJ_P0062871 Phtf1 protein_coding protein_coding MGP_CASTEiJ_T0062872.1 MGP_CASTEiJ_G0026862.1 mouse_genomes_project 3 103888360 103928980 + Phtf1 protein_coding retained_intron MGP_CASTEiJ_T0062873.1 MGP_CASTEiJ_G0026862.1 mouse_genomes_project 3 103888362 103911638 + MGP_CASTEiJ_P0062873 Phtf1 protein_coding protein_coding MGP_CASTEiJ_T0062874.1 MGP_CASTEiJ_G0026862.1 mouse_genomes_project 3 103888434 103928982 + MGP_CASTEiJ_P0062874 Phtf1 protein_coding protein_coding MGP_CASTEiJ_T0062875.1 MGP_CASTEiJ_G0026862.1 mouse_genomes_project 3 103888576 103908073 + MGP_CASTEiJ_P0062875 Phtf1 protein_coding protein_coding MGP_CASTEiJ_T0062876.1 MGP_CASTEiJ_G0026862.1 mouse_genomes_project 3 103888913 103919013 + MGP_CASTEiJ_P0062876 Phtf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062877.1 MGP_CASTEiJ_G0026862.1 mouse_genomes_project 3 103917915 103919057 + Phtf1 protein_coding retained_intron MGP_CASTEiJ_T0100945.1 MGP_CASTEiJ_G0037858.1 mouse_genomes_project 3 25230071 25230232 + Gm26040 snoRNA snoRNA MGP_CASTEiJ_T0013815.1 MGP_CASTEiJ_G0011978.1 mouse_genomes_project 3 116469967 116471104 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098921.1 MGP_CASTEiJ_G0035845.1 mouse_genomes_project 3 104595998 104597387 + Gm43585 sense_intronic sense_intronic MGP_CASTEiJ_T0001152.1 MGP_CASTEiJ_G0001083.1 mouse_genomes_project 3 50277566 50279772 - TEC TEC MGP_CASTEiJ_T0063764.1 MGP_CASTEiJ_G0027046.1 mouse_genomes_project 3 133584296 133693797 + MGP_CASTEiJ_P0063764 Dkk2 protein_coding protein_coding MGP_CASTEiJ_T0013627.1 MGP_CASTEiJ_G0011790.1 mouse_genomes_project 3 56977921 56978338 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063365.1 MGP_CASTEiJ_G0026976.1 mouse_genomes_project 3 117438471 117481960 + MGP_CASTEiJ_P0063365 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063366.1 MGP_CASTEiJ_G0026976.1 mouse_genomes_project 3 117440534 117502523 + MGP_CASTEiJ_P0063366 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063367.1 MGP_CASTEiJ_G0026976.1 mouse_genomes_project 3 117481880 117489783 + protein_coding retained_intron MGP_CASTEiJ_T0063368.1 MGP_CASTEiJ_G0026976.1 mouse_genomes_project 3 117484745 117492373 + protein_coding retained_intron MGP_CASTEiJ_T0063369.1 MGP_CASTEiJ_G0026976.1 mouse_genomes_project 3 117489771 117497343 + MGP_CASTEiJ_P0063369 protein_coding protein_coding MGP_CASTEiJ_T0061795.1 MGP_CASTEiJ_G0026593.1 mouse_genomes_project 3 89237183 89248527 - MGP_CASTEiJ_P0061795 Adam15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0061796.1 MGP_CASTEiJ_G0026593.1 mouse_genomes_project 3 89237188 89248622 - MGP_CASTEiJ_P0061796 Adam15 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061797.1 MGP_CASTEiJ_G0026593.1 mouse_genomes_project 3 89238286 89248629 - MGP_CASTEiJ_P0061797 Adam15 protein_coding protein_coding MGP_CASTEiJ_T0061798.1 MGP_CASTEiJ_G0026593.1 mouse_genomes_project 3 89238287 89239804 - Adam15 protein_coding processed_transcript MGP_CASTEiJ_T0061799.1 MGP_CASTEiJ_G0026593.1 mouse_genomes_project 3 89238290 89239087 - Adam15 protein_coding processed_transcript MGP_CASTEiJ_T0061800.1 MGP_CASTEiJ_G0026593.1 mouse_genomes_project 3 89238290 89248599 - MGP_CASTEiJ_P0061800 Adam15 protein_coding protein_coding MGP_CASTEiJ_T0061801.1 MGP_CASTEiJ_G0026593.1 mouse_genomes_project 3 89238294 89248615 - MGP_CASTEiJ_P0061801 Adam15 protein_coding protein_coding MGP_CASTEiJ_T0061802.1 MGP_CASTEiJ_G0026593.1 mouse_genomes_project 3 89238391 89238999 - Adam15 protein_coding retained_intron MGP_CASTEiJ_T0061803.1 MGP_CASTEiJ_G0026593.1 mouse_genomes_project 3 89238561 89239566 - Adam15 protein_coding retained_intron MGP_CASTEiJ_T0061804.1 MGP_CASTEiJ_G0026593.1 mouse_genomes_project 3 89238720 89242328 - Adam15 protein_coding retained_intron MGP_CASTEiJ_T0061805.1 MGP_CASTEiJ_G0026593.1 mouse_genomes_project 3 89241378 89248614 - Adam15 protein_coding retained_intron MGP_CASTEiJ_T0061806.1 MGP_CASTEiJ_G0026593.1 mouse_genomes_project 3 89245168 89248600 - Adam15 protein_coding retained_intron MGP_CASTEiJ_T0061807.1 MGP_CASTEiJ_G0026593.1 mouse_genomes_project 3 89247158 89247748 - Adam15 protein_coding processed_transcript MGP_CASTEiJ_T0063840.1 MGP_CASTEiJ_G0027061.1 mouse_genomes_project 3 136974077 136999949 + MGP_CASTEiJ_P0063840 Slc9b1 protein_coding protein_coding MGP_CASTEiJ_T0063841.1 MGP_CASTEiJ_G0027061.1 mouse_genomes_project 3 136974082 137026217 + MGP_CASTEiJ_P0063841 Slc9b1 protein_coding protein_coding MGP_CASTEiJ_T0063842.1 MGP_CASTEiJ_G0027061.1 mouse_genomes_project 3 136974094 136985262 + Slc9b1 protein_coding retained_intron MGP_CASTEiJ_T0063843.1 MGP_CASTEiJ_G0027061.1 mouse_genomes_project 3 136974094 136985501 + Slc9b1 protein_coding retained_intron MGP_CASTEiJ_T0063844.1 MGP_CASTEiJ_G0027061.1 mouse_genomes_project 3 136974106 137020673 + Slc9b1 protein_coding processed_transcript MGP_CASTEiJ_T0063845.1 MGP_CASTEiJ_G0027061.1 mouse_genomes_project 3 136974149 137026143 + MGP_CASTEiJ_P0063845 Slc9b1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063846.1 MGP_CASTEiJ_G0027061.1 mouse_genomes_project 3 136974378 137002704 + Slc9b1 protein_coding retained_intron MGP_CASTEiJ_T0063847.1 MGP_CASTEiJ_G0027061.1 mouse_genomes_project 3 137000891 137002427 + Slc9b1 protein_coding retained_intron MGP_CASTEiJ_T0063848.1 MGP_CASTEiJ_G0027061.1 mouse_genomes_project 3 137010658 137026214 + MGP_CASTEiJ_P0063848 Slc9b1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063849.1 MGP_CASTEiJ_G0027061.1 mouse_genomes_project 3 137021592 137026214 + Slc9b1 protein_coding processed_transcript MGP_CASTEiJ_T0007432.1 MGP_CASTEiJ_G0006093.1 mouse_genomes_project 3 93824736 93828286 - 1700040D17Rik lincRNA lincRNA MGP_CASTEiJ_T0013770.1 MGP_CASTEiJ_G0011933.1 mouse_genomes_project 3 101882146 101882424 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063799.1 MGP_CASTEiJ_G0027054.1 mouse_genomes_project 3 134880992 134951768 + MGP_CASTEiJ_P0063799 Ppa2 protein_coding protein_coding MGP_CASTEiJ_T0063800.1 MGP_CASTEiJ_G0027054.1 mouse_genomes_project 3 134880993 134982963 + MGP_CASTEiJ_P0063800 Ppa2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063801.1 MGP_CASTEiJ_G0027054.1 mouse_genomes_project 3 134881004 134951925 + MGP_CASTEiJ_P0063801 Ppa2 protein_coding protein_coding MGP_CASTEiJ_T0063802.1 MGP_CASTEiJ_G0027054.1 mouse_genomes_project 3 134881369 134944185 + Ppa2 protein_coding processed_transcript MGP_CASTEiJ_T0063803.1 MGP_CASTEiJ_G0027054.1 mouse_genomes_project 3 134895017 134900130 + Ppa2 protein_coding retained_intron MGP_CASTEiJ_T0063804.1 MGP_CASTEiJ_G0027054.1 mouse_genomes_project 3 134914849 134941656 + Ppa2 protein_coding processed_transcript MGP_CASTEiJ_T0063805.1 MGP_CASTEiJ_G0027054.1 mouse_genomes_project 3 134915022 134951772 + Ppa2 protein_coding retained_intron MGP_CASTEiJ_T0063806.1 MGP_CASTEiJ_G0027054.1 mouse_genomes_project 3 134923873 134951757 + MGP_CASTEiJ_P0063806 Ppa2 protein_coding protein_coding MGP_CASTEiJ_T0063807.1 MGP_CASTEiJ_G0027054.1 mouse_genomes_project 3 134946155 134948185 + Ppa2 protein_coding retained_intron MGP_CASTEiJ_T0001137.1 MGP_CASTEiJ_G0001070.1 mouse_genomes_project 3 49545565 49545981 - TEC TEC MGP_CASTEiJ_T0011208.1 MGP_CASTEiJ_G0009396.1 mouse_genomes_project 3 41808042 41808348 + Gm25714 misc_RNA misc_RNA MGP_CASTEiJ_T0100979.1 MGP_CASTEiJ_G0037892.1 mouse_genomes_project 3 94535837 94535922 - Gm24920 snoRNA snoRNA MGP_CASTEiJ_T0007551.1 MGP_CASTEiJ_G0006194.1 mouse_genomes_project 3 145692014 145705588 + Gm33651 lincRNA lincRNA MGP_CASTEiJ_T0063273.1 MGP_CASTEiJ_G0026958.1 mouse_genomes_project 3 114492009 114706504 + MGP_CASTEiJ_P0063273 Col11a1 protein_coding protein_coding MGP_CASTEiJ_T0063274.1 MGP_CASTEiJ_G0026958.1 mouse_genomes_project 3 114492009 114583839 + MGP_CASTEiJ_P0063274 Col11a1 protein_coding protein_coding MGP_CASTEiJ_T0063275.1 MGP_CASTEiJ_G0026958.1 mouse_genomes_project 3 114492103 114494626 + Col11a1 protein_coding retained_intron MGP_CASTEiJ_T0063276.1 MGP_CASTEiJ_G0026958.1 mouse_genomes_project 3 114528998 114529965 + Col11a1 protein_coding retained_intron MGP_CASTEiJ_T0063277.1 MGP_CASTEiJ_G0026958.1 mouse_genomes_project 3 114533935 114705133 + MGP_CASTEiJ_P0063277 Col11a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063278.1 MGP_CASTEiJ_G0026958.1 mouse_genomes_project 3 114630274 114637129 + Col11a1 protein_coding retained_intron MGP_CASTEiJ_T0063279.1 MGP_CASTEiJ_G0026958.1 mouse_genomes_project 3 114648288 114705122 + MGP_CASTEiJ_P0063279 Col11a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001164.1 MGP_CASTEiJ_G0001095.1 mouse_genomes_project 3 52124097 52125692 + TEC TEC MGP_CASTEiJ_T0100944.1 MGP_CASTEiJ_G0037857.1 mouse_genomes_project 3 24412532 24412646 + Gm25152 snoRNA snoRNA MGP_CASTEiJ_T0062086.1 MGP_CASTEiJ_G0026670.1 mouse_genomes_project 3 91934651 91936992 - MGP_CASTEiJ_P0062086 Lce1b protein_coding protein_coding MGP_CASTEiJ_T0061310.1 MGP_CASTEiJ_G0026505.1 mouse_genomes_project 3 83686665 83687687 + MGP_CASTEiJ_P0061310 Gm6525 protein_coding protein_coding MGP_CASTEiJ_T0063380.1 MGP_CASTEiJ_G0026981.1 mouse_genomes_project 3 118452435 118524422 - MGP_CASTEiJ_P0063380 Snx7 protein_coding protein_coding MGP_CASTEiJ_T0063381.1 MGP_CASTEiJ_G0026981.1 mouse_genomes_project 3 118452559 118551412 - MGP_CASTEiJ_P0063381 Snx7 protein_coding protein_coding MGP_CASTEiJ_T0063382.1 MGP_CASTEiJ_G0026981.1 mouse_genomes_project 3 118452559 118551496 - MGP_CASTEiJ_P0063382 Snx7 protein_coding protein_coding MGP_CASTEiJ_T0063383.1 MGP_CASTEiJ_G0026981.1 mouse_genomes_project 3 118503228 118509021 - Snx7 protein_coding retained_intron MGP_CASTEiJ_T0007463.1 MGP_CASTEiJ_G0006121.1 mouse_genomes_project 3 105741208 105742457 - Gm43848 lincRNA lincRNA MGP_CASTEiJ_T0007467.1 MGP_CASTEiJ_G0006123.1 mouse_genomes_project 3 107121323 107154653 - lincRNA lincRNA MGP_CASTEiJ_T0062171.1 MGP_CASTEiJ_G0026708.1 mouse_genomes_project 3 93922431 94007406 - MGP_CASTEiJ_P0062171 Snx27 protein_coding protein_coding MGP_CASTEiJ_T0062172.1 MGP_CASTEiJ_G0026708.1 mouse_genomes_project 3 93924200 94007239 - MGP_CASTEiJ_P0062172 Snx27 protein_coding protein_coding MGP_CASTEiJ_T0062173.1 MGP_CASTEiJ_G0026708.1 mouse_genomes_project 3 93925926 93952199 - Snx27 protein_coding processed_transcript MGP_CASTEiJ_T0062174.1 MGP_CASTEiJ_G0026708.1 mouse_genomes_project 3 93926012 94007369 - MGP_CASTEiJ_P0062174 Snx27 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062175.1 MGP_CASTEiJ_G0026708.1 mouse_genomes_project 3 93926022 93947006 - Snx27 protein_coding processed_transcript MGP_CASTEiJ_T0062176.1 MGP_CASTEiJ_G0026708.1 mouse_genomes_project 3 93926941 93985278 - MGP_CASTEiJ_P0062176 Snx27 protein_coding protein_coding MGP_CASTEiJ_T0062177.1 MGP_CASTEiJ_G0026708.1 mouse_genomes_project 3 93947024 93985041 - MGP_CASTEiJ_P0062177 Snx27 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062178.1 MGP_CASTEiJ_G0026708.1 mouse_genomes_project 3 93959123 93959772 - Snx27 protein_coding processed_transcript MGP_CASTEiJ_T0001221.1 MGP_CASTEiJ_G0001152.1 mouse_genomes_project 3 96868190 96869379 - TEC TEC MGP_CASTEiJ_T0001349.1 MGP_CASTEiJ_G0001279.1 mouse_genomes_project 3 161150696 161152448 + TEC TEC MGP_CASTEiJ_T0001283.1 MGP_CASTEiJ_G0001214.1 mouse_genomes_project 3 128577197 128580896 - TEC TEC MGP_CASTEiJ_T0001064.1 MGP_CASTEiJ_G0000997.1 mouse_genomes_project 3 7599317 7599815 + TEC TEC MGP_CASTEiJ_T0102291.1 MGP_CASTEiJ_G0039016.1 mouse_genomes_project 3 98532060 98546354 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0060608.1 MGP_CASTEiJ_G0026354.1 mouse_genomes_project 3 39334429 39400720 + MGP_CASTEiJ_P0060608 Jade1 protein_coding protein_coding MGP_CASTEiJ_T0060609.1 MGP_CASTEiJ_G0026354.1 mouse_genomes_project 3 39334439 39375976 + MGP_CASTEiJ_P0060609 Jade1 protein_coding protein_coding MGP_CASTEiJ_T0060610.1 MGP_CASTEiJ_G0026354.1 mouse_genomes_project 3 39334458 39379099 + MGP_CASTEiJ_P0060610 Jade1 protein_coding protein_coding MGP_CASTEiJ_T0060611.1 MGP_CASTEiJ_G0026354.1 mouse_genomes_project 3 39343848 39400714 + MGP_CASTEiJ_P0060611 Jade1 protein_coding protein_coding MGP_CASTEiJ_T0060612.1 MGP_CASTEiJ_G0026354.1 mouse_genomes_project 3 39343890 39373926 + Jade1 protein_coding processed_transcript MGP_CASTEiJ_T0060613.1 MGP_CASTEiJ_G0026354.1 mouse_genomes_project 3 39344086 39397913 + MGP_CASTEiJ_P0060613 Jade1 protein_coding protein_coding MGP_CASTEiJ_T0060614.1 MGP_CASTEiJ_G0026354.1 mouse_genomes_project 3 39346980 39399973 + MGP_CASTEiJ_P0060614 Jade1 protein_coding protein_coding MGP_CASTEiJ_T0060615.1 MGP_CASTEiJ_G0026354.1 mouse_genomes_project 3 39347024 39373924 + Jade1 protein_coding processed_transcript MGP_CASTEiJ_T0060616.1 MGP_CASTEiJ_G0026354.1 mouse_genomes_project 3 39347046 39390535 + MGP_CASTEiJ_P0060616 Jade1 protein_coding protein_coding MGP_CASTEiJ_T0060617.1 MGP_CASTEiJ_G0026354.1 mouse_genomes_project 3 39363098 39371200 + Jade1 protein_coding retained_intron MGP_CASTEiJ_T0060618.1 MGP_CASTEiJ_G0026354.1 mouse_genomes_project 3 39373864 39382687 + Jade1 protein_coding retained_intron MGP_CASTEiJ_T0060619.1 MGP_CASTEiJ_G0026354.1 mouse_genomes_project 3 39375967 39388405 + Jade1 protein_coding retained_intron MGP_CASTEiJ_T0060620.1 MGP_CASTEiJ_G0026354.1 mouse_genomes_project 3 39379145 39388641 + MGP_CASTEiJ_P0060620 Jade1 protein_coding protein_coding MGP_CASTEiJ_T0060621.1 MGP_CASTEiJ_G0026354.1 mouse_genomes_project 3 39386264 39388648 + Jade1 protein_coding processed_transcript MGP_CASTEiJ_T0100967.1 MGP_CASTEiJ_G0037880.1 mouse_genomes_project 3 81294019 81294159 + Gm22531 snoRNA snoRNA MGP_CASTEiJ_T0010255.1 MGP_CASTEiJ_G0008443.1 mouse_genomes_project 3 109497518 109497632 + Gm44384 miRNA miRNA MGP_CASTEiJ_T0013459.1 MGP_CASTEiJ_G0011622.1 mouse_genomes_project 3 952650 953052 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064101.1 MGP_CASTEiJ_G0027108.1 mouse_genomes_project 3 146904691 146907738 - MGP_CASTEiJ_P0064101 protein_coding protein_coding MGP_CASTEiJ_T0013780.1 MGP_CASTEiJ_G0011943.1 mouse_genomes_project 3 104056314 104057152 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062093.1 MGP_CASTEiJ_G0026677.1 mouse_genomes_project 3 92074499 92076143 - MGP_CASTEiJ_P0062093 Lce1j protein_coding protein_coding MGP_CASTEiJ_T0062094.1 MGP_CASTEiJ_G0026677.1 mouse_genomes_project 3 92074708 92075098 - MGP_CASTEiJ_P0062094 Lce1j protein_coding protein_coding MGP_CASTEiJ_T0004104.1 MGP_CASTEiJ_G0003619.1 mouse_genomes_project 3 36641870 36657940 - C230034O21Rik antisense antisense MGP_CASTEiJ_T0013531.1 MGP_CASTEiJ_G0011694.1 mouse_genomes_project 3 19249605 19250038 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007594.1 MGP_CASTEiJ_G0006225.1 mouse_genomes_project 3 158910605 158911837 - lincRNA lincRNA MGP_CASTEiJ_T0064494.1 MGP_CASTEiJ_G0027171.1 mouse_genomes_project 3 162408069 162452241 + MGP_CASTEiJ_P0064494 Depdc1a protein_coding protein_coding MGP_CASTEiJ_T0064495.1 MGP_CASTEiJ_G0027171.1 mouse_genomes_project 3 162408087 162452241 + MGP_CASTEiJ_P0064495 Depdc1a protein_coding protein_coding MGP_CASTEiJ_T0064496.1 MGP_CASTEiJ_G0027171.1 mouse_genomes_project 3 162408094 162452174 + MGP_CASTEiJ_P0064496 Depdc1a protein_coding protein_coding MGP_CASTEiJ_T0007445.1 MGP_CASTEiJ_G0006105.1 mouse_genomes_project 3 97593415 97631807 + Gm5544 lincRNA lincRNA MGP_CASTEiJ_T0099767.1 MGP_CASTEiJ_G0036680.1 mouse_genomes_project 3 162798215 162798322 - Gm23941 snRNA snRNA MGP_CASTEiJ_T0010272.1 MGP_CASTEiJ_G0008460.1 mouse_genomes_project 3 140315049 140315114 + Mir1956 miRNA miRNA MGP_CASTEiJ_T0004238.1 MGP_CASTEiJ_G0003711.1 mouse_genomes_project 3 128320197 128328531 + Gm16958 antisense antisense MGP_CASTEiJ_T0004239.1 MGP_CASTEiJ_G0003711.1 mouse_genomes_project 3 128320231 128327570 + Gm16958 antisense antisense MGP_CASTEiJ_T0013885.1 MGP_CASTEiJ_G0012048.1 mouse_genomes_project 3 140292466 140292835 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013748.1 MGP_CASTEiJ_G0011911.1 mouse_genomes_project 3 95498397 95498757 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004127.1 MGP_CASTEiJ_G0003638.1 mouse_genomes_project 3 63879615 64056756 - antisense antisense MGP_CASTEiJ_T0004128.1 MGP_CASTEiJ_G0003638.1 mouse_genomes_project 3 64048382 64056728 - antisense antisense MGP_CASTEiJ_T0099750.1 MGP_CASTEiJ_G0036663.1 mouse_genomes_project 3 133407604 133407699 + Gm26103 snRNA snRNA MGP_CASTEiJ_T0001118.1 MGP_CASTEiJ_G0001051.1 mouse_genomes_project 3 39551344 39555262 + TEC TEC MGP_CASTEiJ_T0060465.1 MGP_CASTEiJ_G0026329.1 mouse_genomes_project 3 34242152 34249430 - MGP_CASTEiJ_P0060465 Ccna2 protein_coding protein_coding MGP_CASTEiJ_T0060466.1 MGP_CASTEiJ_G0026329.1 mouse_genomes_project 3 34242976 34244190 - Ccna2 protein_coding processed_transcript MGP_CASTEiJ_T0060467.1 MGP_CASTEiJ_G0026329.1 mouse_genomes_project 3 34243320 34248831 - MGP_CASTEiJ_P0060467 Ccna2 protein_coding protein_coding MGP_CASTEiJ_T0060468.1 MGP_CASTEiJ_G0026329.1 mouse_genomes_project 3 34243320 34249207 - MGP_CASTEiJ_P0060468 Ccna2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060469.1 MGP_CASTEiJ_G0026329.1 mouse_genomes_project 3 34247726 34249244 - Ccna2 protein_coding retained_intron MGP_CASTEiJ_T0001130.1 MGP_CASTEiJ_G0001063.1 mouse_genomes_project 3 48892169 48896245 - TEC TEC MGP_CASTEiJ_T0013797.1 MGP_CASTEiJ_G0011960.1 mouse_genomes_project 3 110861367 110862010 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004174.1 MGP_CASTEiJ_G0003671.1 mouse_genomes_project 3 95749043 95759409 - Gm15444 antisense antisense MGP_CASTEiJ_T0060131.1 MGP_CASTEiJ_G0026269.1 mouse_genomes_project 3 17443445 17469905 - MGP_CASTEiJ_P0060131 Cpa3 protein_coding protein_coding MGP_CASTEiJ_T0060132.1 MGP_CASTEiJ_G0026269.1 mouse_genomes_project 3 17456652 17468470 - Cpa3 protein_coding processed_transcript MGP_CASTEiJ_T0062061.1 MGP_CASTEiJ_G0026650.1 mouse_genomes_project 3 91496446 91499830 + MGP_CASTEiJ_P0062061 protein_coding protein_coding MGP_CASTEiJ_T0004134.1 MGP_CASTEiJ_G0003644.1 mouse_genomes_project 3 79503130 79506236 - Gm37892 antisense antisense MGP_CASTEiJ_T0007370.1 MGP_CASTEiJ_G0006049.1 mouse_genomes_project 3 57294743 57394625 + 4930593A02Rik lincRNA lincRNA MGP_CASTEiJ_T0007371.1 MGP_CASTEiJ_G0006049.1 mouse_genomes_project 3 57335241 57405668 + 4930593A02Rik lincRNA lincRNA MGP_CASTEiJ_T0013923.1 MGP_CASTEiJ_G0012086.1 mouse_genomes_project 3 158360335 158361103 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064164.1 MGP_CASTEiJ_G0027123.1 mouse_genomes_project 3 148549316 148618066 + MGP_CASTEiJ_P0064164 Lpar3 protein_coding protein_coding MGP_CASTEiJ_T0001198.1 MGP_CASTEiJ_G0001129.1 mouse_genomes_project 3 77650800 77652440 - TEC TEC MGP_CASTEiJ_T0013899.1 MGP_CASTEiJ_G0012062.1 mouse_genomes_project 3 144560671 144561303 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013552.1 MGP_CASTEiJ_G0011715.1 mouse_genomes_project 3 31286798 31289747 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101777.1 MGP_CASTEiJ_G0038560.1 mouse_genomes_project 3 128676003 128678655 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0060456.1 MGP_CASTEiJ_G0026327.1 mouse_genomes_project 3 34150599 34157217 + MGP_CASTEiJ_P0060456 protein_coding protein_coding MGP_CASTEiJ_T0062721.1 MGP_CASTEiJ_G0026834.1 mouse_genomes_project 3 101617217 101640755 - MGP_CASTEiJ_P0062721 Mab21l3 protein_coding protein_coding MGP_CASTEiJ_T0062722.1 MGP_CASTEiJ_G0026834.1 mouse_genomes_project 3 101617824 101652505 - MGP_CASTEiJ_P0062722 Mab21l3 protein_coding protein_coding MGP_CASTEiJ_T0013903.1 MGP_CASTEiJ_G0012066.1 mouse_genomes_project 3 146788296 146788858 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007556.1 MGP_CASTEiJ_G0006198.1 mouse_genomes_project 3 145868036 145957309 + Gm42705 lincRNA lincRNA MGP_CASTEiJ_T0001295.1 MGP_CASTEiJ_G0001225.1 mouse_genomes_project 3 132078198 132080336 + TEC TEC MGP_CASTEiJ_T0064418.1 MGP_CASTEiJ_G0027160.1 mouse_genomes_project 3 157605863 157888830 - MGP_CASTEiJ_P0064418 Tnni3k protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064419.1 MGP_CASTEiJ_G0027160.1 mouse_genomes_project 3 157605871 157888830 - MGP_CASTEiJ_P0064419 Tnni3k protein_coding protein_coding MGP_CASTEiJ_T0064420.1 MGP_CASTEiJ_G0027160.1 mouse_genomes_project 3 157863420 157888773 - Tnni3k protein_coding retained_intron MGP_CASTEiJ_T0062894.1 MGP_CASTEiJ_G0026867.1 mouse_genomes_project 3 104745842 104750810 + MGP_CASTEiJ_P0062894 Ppm1j protein_coding protein_coding MGP_CASTEiJ_T0062895.1 MGP_CASTEiJ_G0026867.1 mouse_genomes_project 3 104750400 104750810 + Ppm1j protein_coding retained_intron MGP_CASTEiJ_T0013889.1 MGP_CASTEiJ_G0012052.1 mouse_genomes_project 3 140641494 140641972 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062508.1 MGP_CASTEiJ_G0026777.1 mouse_genomes_project 3 96066976 96071635 + MGP_CASTEiJ_P0062508 Hfe2 protein_coding protein_coding MGP_CASTEiJ_T0062478.1 MGP_CASTEiJ_G0026759.1 mouse_genomes_project 3 95699812 95710736 + Mtmr11 protein_coding retained_intron MGP_CASTEiJ_T0062479.1 MGP_CASTEiJ_G0026759.1 mouse_genomes_project 3 95699812 95710737 + MGP_CASTEiJ_P0062479 Mtmr11 protein_coding protein_coding MGP_CASTEiJ_T0062480.1 MGP_CASTEiJ_G0026759.1 mouse_genomes_project 3 95699893 95710737 + MGP_CASTEiJ_P0062480 Mtmr11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062481.1 MGP_CASTEiJ_G0026759.1 mouse_genomes_project 3 95699974 95701198 + Mtmr11 protein_coding retained_intron MGP_CASTEiJ_T0062482.1 MGP_CASTEiJ_G0026759.1 mouse_genomes_project 3 95700390 95710737 + Mtmr11 protein_coding processed_transcript MGP_CASTEiJ_T0062483.1 MGP_CASTEiJ_G0026759.1 mouse_genomes_project 3 95707894 95709013 + Mtmr11 protein_coding processed_transcript MGP_CASTEiJ_T0062484.1 MGP_CASTEiJ_G0026759.1 mouse_genomes_project 3 95709604 95710489 + Mtmr11 protein_coding processed_transcript MGP_CASTEiJ_T0001076.1 MGP_CASTEiJ_G0001009.1 mouse_genomes_project 3 25713565 25715306 + TEC TEC MGP_CASTEiJ_T0007448.1 MGP_CASTEiJ_G0006108.1 mouse_genomes_project 3 100157204 100158502 + Gm43121 lincRNA lincRNA MGP_CASTEiJ_T0001262.1 MGP_CASTEiJ_G0001193.1 mouse_genomes_project 3 124711081 124714426 - TEC TEC MGP_CASTEiJ_T0007328.1 MGP_CASTEiJ_G0006021.1 mouse_genomes_project 3 36198681 36214578 - Gm43536 lincRNA lincRNA MGP_CASTEiJ_T0007329.1 MGP_CASTEiJ_G0006021.1 mouse_genomes_project 3 36200336 36214818 - Gm43536 lincRNA lincRNA MGP_CASTEiJ_T0064273.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154882107 154908418 + MGP_CASTEiJ_P0064273 Fubp1 protein_coding protein_coding MGP_CASTEiJ_T0064274.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154882158 154892209 + MGP_CASTEiJ_P0064274 Fubp1 protein_coding protein_coding MGP_CASTEiJ_T0064275.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154882167 154904340 + MGP_CASTEiJ_P0064275 Fubp1 protein_coding protein_coding MGP_CASTEiJ_T0064276.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154882177 154896634 + MGP_CASTEiJ_P0064276 Fubp1 protein_coding protein_coding MGP_CASTEiJ_T0064277.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154882183 154904339 + MGP_CASTEiJ_P0064277 Fubp1 protein_coding protein_coding MGP_CASTEiJ_T0064278.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154882199 154891425 + MGP_CASTEiJ_P0064278 Fubp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064279.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154882204 154904339 + MGP_CASTEiJ_P0064279 Fubp1 protein_coding protein_coding MGP_CASTEiJ_T0064280.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154882204 154907338 + MGP_CASTEiJ_P0064280 Fubp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064281.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154882206 154908418 + MGP_CASTEiJ_P0064281 Fubp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064282.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154889104 154890210 + Fubp1 protein_coding retained_intron MGP_CASTEiJ_T0064283.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154893074 154895863 + MGP_CASTEiJ_P0064283 Fubp1 protein_coding protein_coding MGP_CASTEiJ_T0064284.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154893587 154894699 + Fubp1 protein_coding retained_intron MGP_CASTEiJ_T0064285.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154895016 154904340 + MGP_CASTEiJ_P0064285 Fubp1 protein_coding protein_coding MGP_CASTEiJ_T0064286.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154895029 154904357 + MGP_CASTEiJ_P0064286 Fubp1 protein_coding protein_coding MGP_CASTEiJ_T0064287.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154895039 154907436 + MGP_CASTEiJ_P0064287 Fubp1 protein_coding protein_coding MGP_CASTEiJ_T0064288.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154896495 154906982 + Fubp1 protein_coding retained_intron MGP_CASTEiJ_T0064289.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154897642 154899796 + Fubp1 protein_coding retained_intron MGP_CASTEiJ_T0064290.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154898877 154902871 + Fubp1 protein_coding retained_intron MGP_CASTEiJ_T0064291.1 MGP_CASTEiJ_G0027142.1 mouse_genomes_project 3 154899389 154904075 + Fubp1 protein_coding retained_intron MGP_CASTEiJ_T0062323.1 MGP_CASTEiJ_G0026734.1 mouse_genomes_project 3 94745916 94750540 + Fam63a protein_coding processed_transcript MGP_CASTEiJ_T0062324.1 MGP_CASTEiJ_G0026734.1 mouse_genomes_project 3 94745988 94753030 + Fam63a protein_coding processed_transcript MGP_CASTEiJ_T0062325.1 MGP_CASTEiJ_G0026734.1 mouse_genomes_project 3 94746058 94748094 + Fam63a protein_coding processed_transcript MGP_CASTEiJ_T0062326.1 MGP_CASTEiJ_G0026734.1 mouse_genomes_project 3 94746416 94749434 + Fam63a protein_coding processed_transcript MGP_CASTEiJ_T0062327.1 MGP_CASTEiJ_G0026734.1 mouse_genomes_project 3 94747519 94765260 + MGP_CASTEiJ_P0062327 Fam63a protein_coding protein_coding MGP_CASTEiJ_T0062328.1 MGP_CASTEiJ_G0026734.1 mouse_genomes_project 3 94747519 94765260 + MGP_CASTEiJ_P0062328 Fam63a protein_coding protein_coding MGP_CASTEiJ_T0062329.1 MGP_CASTEiJ_G0026734.1 mouse_genomes_project 3 94747793 94758452 + Fam63a protein_coding retained_intron MGP_CASTEiJ_T0062330.1 MGP_CASTEiJ_G0026734.1 mouse_genomes_project 3 94748179 94753030 + Fam63a protein_coding processed_transcript MGP_CASTEiJ_T0062331.1 MGP_CASTEiJ_G0026734.1 mouse_genomes_project 3 94750415 94753208 + MGP_CASTEiJ_P0062331 Fam63a protein_coding protein_coding MGP_CASTEiJ_T0062332.1 MGP_CASTEiJ_G0026734.1 mouse_genomes_project 3 94750774 94753154 + Fam63a protein_coding processed_transcript MGP_CASTEiJ_T0062333.1 MGP_CASTEiJ_G0026734.1 mouse_genomes_project 3 94753141 94765257 + MGP_CASTEiJ_P0062333 Fam63a protein_coding protein_coding MGP_CASTEiJ_T0062334.1 MGP_CASTEiJ_G0026734.1 mouse_genomes_project 3 94758626 94765255 + Fam63a protein_coding processed_transcript MGP_CASTEiJ_T0004219.1 MGP_CASTEiJ_G0003695.1 mouse_genomes_project 3 109119707 109123482 + Gm27244 antisense antisense MGP_CASTEiJ_T0059953.1 MGP_CASTEiJ_G0026222.1 mouse_genomes_project 3 4749703 4805208 - MGP_CASTEiJ_P0059953 Il7 protein_coding protein_coding MGP_CASTEiJ_T0059954.1 MGP_CASTEiJ_G0026222.1 mouse_genomes_project 3 4751736 4796284 - MGP_CASTEiJ_P0059954 Il7 protein_coding protein_coding MGP_CASTEiJ_T0059955.1 MGP_CASTEiJ_G0026222.1 mouse_genomes_project 3 4752821 4804374 - MGP_CASTEiJ_P0059955 Il7 protein_coding protein_coding MGP_CASTEiJ_T0059956.1 MGP_CASTEiJ_G0026222.1 mouse_genomes_project 3 4752876 4805241 - MGP_CASTEiJ_P0059956 Il7 protein_coding protein_coding MGP_CASTEiJ_T0059957.1 MGP_CASTEiJ_G0026222.1 mouse_genomes_project 3 4753628 4805222 - Il7 protein_coding processed_transcript MGP_CASTEiJ_T0013816.1 MGP_CASTEiJ_G0011979.1 mouse_genomes_project 3 117104524 117104966 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004249.1 MGP_CASTEiJ_G0003720.1 mouse_genomes_project 3 135123173 135173583 + Gm42567 antisense antisense MGP_CASTEiJ_T0099725.1 MGP_CASTEiJ_G0036638.1 mouse_genomes_project 3 90578935 90579082 - Gm23464 snRNA snRNA MGP_CASTEiJ_T0004112.1 MGP_CASTEiJ_G0003627.1 mouse_genomes_project 3 51474755 51477772 - Gm43803 antisense antisense MGP_CASTEiJ_T0004113.1 MGP_CASTEiJ_G0003627.1 mouse_genomes_project 3 51474772 51476077 - Gm43803 antisense antisense MGP_CASTEiJ_T0004197.1 MGP_CASTEiJ_G0003687.1 mouse_genomes_project 3 104962832 104972816 + Gm42956 antisense antisense MGP_CASTEiJ_T0001147.1 MGP_CASTEiJ_G0001079.1 mouse_genomes_project 3 50153881 50155064 - TEC TEC MGP_CASTEiJ_T0060254.1 MGP_CASTEiJ_G0026289.1 mouse_genomes_project 3 28067351 28070220 - MGP_CASTEiJ_P0060254 Actrt3 protein_coding protein_coding MGP_CASTEiJ_T0064431.1 MGP_CASTEiJ_G0027163.1 mouse_genomes_project 3 159445279 160225725 + MGP_CASTEiJ_P0064431 Negr1 protein_coding protein_coding MGP_CASTEiJ_T0064432.1 MGP_CASTEiJ_G0027163.1 mouse_genomes_project 3 159445444 160076739 + MGP_CASTEiJ_P0064432 Negr1 protein_coding protein_coding MGP_CASTEiJ_T0064433.1 MGP_CASTEiJ_G0027163.1 mouse_genomes_project 3 159445454 160106463 + MGP_CASTEiJ_P0064433 Negr1 protein_coding protein_coding MGP_CASTEiJ_T0064434.1 MGP_CASTEiJ_G0027163.1 mouse_genomes_project 3 159445631 159449605 + Negr1 protein_coding retained_intron MGP_CASTEiJ_T0064435.1 MGP_CASTEiJ_G0027163.1 mouse_genomes_project 3 159445635 159914971 + MGP_CASTEiJ_P0064435 Negr1 protein_coding protein_coding MGP_CASTEiJ_T0064025.1 MGP_CASTEiJ_G0027095.1 mouse_genomes_project 3 144230993 144401415 - MGP_CASTEiJ_P0064025 protein_coding protein_coding MGP_CASTEiJ_T0064026.1 MGP_CASTEiJ_G0027095.1 mouse_genomes_project 3 144234080 144401300 - MGP_CASTEiJ_P0064026 protein_coding protein_coding MGP_CASTEiJ_T0064027.1 MGP_CASTEiJ_G0027095.1 mouse_genomes_project 3 144234080 144396836 - MGP_CASTEiJ_P0064027 protein_coding protein_coding MGP_CASTEiJ_T0064028.1 MGP_CASTEiJ_G0027095.1 mouse_genomes_project 3 144234080 144396836 - MGP_CASTEiJ_P0064028 protein_coding protein_coding MGP_CASTEiJ_T0064029.1 MGP_CASTEiJ_G0027095.1 mouse_genomes_project 3 144234080 144396836 - MGP_CASTEiJ_P0064029 protein_coding protein_coding MGP_CASTEiJ_T0064030.1 MGP_CASTEiJ_G0027095.1 mouse_genomes_project 3 144235860 144237937 - protein_coding retained_intron MGP_CASTEiJ_T0064031.1 MGP_CASTEiJ_G0027095.1 mouse_genomes_project 3 144240768 144301331 - MGP_CASTEiJ_P0064031 protein_coding protein_coding MGP_CASTEiJ_T0064032.1 MGP_CASTEiJ_G0027095.1 mouse_genomes_project 3 144299421 144396878 - MGP_CASTEiJ_P0064032 protein_coding protein_coding MGP_CASTEiJ_T0064033.1 MGP_CASTEiJ_G0027095.1 mouse_genomes_project 3 144299656 144401329 - MGP_CASTEiJ_P0064033 protein_coding protein_coding MGP_CASTEiJ_T0064034.1 MGP_CASTEiJ_G0027095.1 mouse_genomes_project 3 144299661 144396878 - MGP_CASTEiJ_P0064034 protein_coding protein_coding MGP_CASTEiJ_T0064035.1 MGP_CASTEiJ_G0027095.1 mouse_genomes_project 3 144300572 144401340 - MGP_CASTEiJ_P0064035 protein_coding protein_coding MGP_CASTEiJ_T0064036.1 MGP_CASTEiJ_G0027095.1 mouse_genomes_project 3 144300679 144401418 - MGP_CASTEiJ_P0064036 protein_coding protein_coding MGP_CASTEiJ_T0011214.1 MGP_CASTEiJ_G0009402.1 mouse_genomes_project 3 89200971 89201223 + Gm22642 misc_RNA misc_RNA MGP_CASTEiJ_T0001109.1 MGP_CASTEiJ_G0001042.1 mouse_genomes_project 3 35459046 35462191 + TEC TEC MGP_CASTEiJ_T0062738.1 MGP_CASTEiJ_G0026838.1 mouse_genomes_project 3 101976146 102031945 - MGP_CASTEiJ_P0062738 Vangl1 protein_coding protein_coding MGP_CASTEiJ_T0062739.1 MGP_CASTEiJ_G0026838.1 mouse_genomes_project 3 101976194 102031940 - MGP_CASTEiJ_P0062739 Vangl1 protein_coding protein_coding MGP_CASTEiJ_T0062740.1 MGP_CASTEiJ_G0026838.1 mouse_genomes_project 3 101980722 102031465 - MGP_CASTEiJ_P0062740 Vangl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0062741.1 MGP_CASTEiJ_G0026838.1 mouse_genomes_project 3 101980774 101990637 - MGP_CASTEiJ_P0062741 Vangl1 protein_coding protein_coding MGP_CASTEiJ_T0062742.1 MGP_CASTEiJ_G0026838.1 mouse_genomes_project 3 101980777 102031215 - MGP_CASTEiJ_P0062742 Vangl1 protein_coding protein_coding MGP_CASTEiJ_T0062743.1 MGP_CASTEiJ_G0026838.1 mouse_genomes_project 3 101985515 101990680 - Vangl1 protein_coding retained_intron MGP_CASTEiJ_T0062744.1 MGP_CASTEiJ_G0026838.1 mouse_genomes_project 3 101985692 101989644 - Vangl1 protein_coding processed_transcript MGP_CASTEiJ_T0062745.1 MGP_CASTEiJ_G0026838.1 mouse_genomes_project 3 102011578 102025137 - MGP_CASTEiJ_P0062745 Vangl1 protein_coding protein_coding MGP_CASTEiJ_T0062746.1 MGP_CASTEiJ_G0026838.1 mouse_genomes_project 3 102024054 102031133 - MGP_CASTEiJ_P0062746 Vangl1 protein_coding protein_coding MGP_CASTEiJ_T0013750.1 MGP_CASTEiJ_G0011913.1 mouse_genomes_project 3 95952431 95953740 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010256.1 MGP_CASTEiJ_G0008444.1 mouse_genomes_project 3 116505664 116505718 + Mir669n miRNA miRNA MGP_CASTEiJ_T0061733.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89094479 89099340 - MGP_CASTEiJ_P0061733 Mtx1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0061734.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89094481 89099840 - MGP_CASTEiJ_P0061734 Mtx1 protein_coding protein_coding MGP_CASTEiJ_T0061735.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89094486 89095741 - MGP_CASTEiJ_P0061735 Mtx1 protein_coding protein_coding MGP_CASTEiJ_T0061736.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89094487 89095065 - Mtx1 protein_coding retained_intron MGP_CASTEiJ_T0061737.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89094487 89095499 - Mtx1 protein_coding processed_transcript MGP_CASTEiJ_T0061738.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89094487 89099767 - MGP_CASTEiJ_P0061738 Mtx1 protein_coding protein_coding MGP_CASTEiJ_T0061739.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89094489 89095526 - MGP_CASTEiJ_P0061739 Mtx1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061740.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89094492 89099317 - MGP_CASTEiJ_P0061740 Mtx1 protein_coding protein_coding MGP_CASTEiJ_T0061741.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89094607 89099303 - MGP_CASTEiJ_P0061741 Mtx1 protein_coding protein_coding MGP_CASTEiJ_T0061742.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89094613 89099250 - MGP_CASTEiJ_P0061742 Mtx1 protein_coding protein_coding MGP_CASTEiJ_T0061743.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89094728 89099322 - MGP_CASTEiJ_P0061743 Mtx1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061744.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89094756 89113787 - MGP_CASTEiJ_P0061744 Mtx1 protein_coding protein_coding MGP_CASTEiJ_T0061745.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89094814 89096241 - Mtx1 protein_coding retained_intron MGP_CASTEiJ_T0061746.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89095046 89096128 - Mtx1 protein_coding retained_intron MGP_CASTEiJ_T0061747.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89095149 89099272 - Mtx1 protein_coding retained_intron MGP_CASTEiJ_T0061748.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89095436 89099295 - MGP_CASTEiJ_P0061748 Mtx1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061749.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89095664 89099287 - Mtx1 protein_coding retained_intron MGP_CASTEiJ_T0061750.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89096080 89099236 - MGP_CASTEiJ_P0061750 Mtx1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061758.1 MGP_CASTEiJ_G0026583.1 mouse_genomes_project 3 89110834 89113823 - Mtx1 protein_coding processed_transcript MGP_CASTEiJ_T0060855.1 MGP_CASTEiJ_G0026399.1 mouse_genomes_project 3 56197716 56230707 - MGP_CASTEiJ_P0060855 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060856.1 MGP_CASTEiJ_G0026399.1 mouse_genomes_project 3 56197761 56230254 - MGP_CASTEiJ_P0060856 protein_coding unknown_likely_coding MGP_CASTEiJ_T0060857.1 MGP_CASTEiJ_G0026399.1 mouse_genomes_project 3 56207562 56230443 - MGP_CASTEiJ_P0060857 protein_coding protein_coding MGP_CASTEiJ_T0060858.1 MGP_CASTEiJ_G0026399.1 mouse_genomes_project 3 56209412 56230445 - MGP_CASTEiJ_P0060858 protein_coding protein_coding MGP_CASTEiJ_T0064497.1 MGP_CASTEiJ_G0027172.1 mouse_genomes_project 3 162512764 162533051 + MGP_CASTEiJ_P0064497 Rpe65 protein_coding protein_coding MGP_CASTEiJ_T0064498.1 MGP_CASTEiJ_G0027172.1 mouse_genomes_project 3 162512807 162520051 + MGP_CASTEiJ_P0064498 Rpe65 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064499.1 MGP_CASTEiJ_G0027172.1 mouse_genomes_project 3 162512822 162532529 + MGP_CASTEiJ_P0064499 Rpe65 protein_coding protein_coding MGP_CASTEiJ_T0063356.1 MGP_CASTEiJ_G0026975.1 mouse_genomes_project 3 117323513 117387936 - MGP_CASTEiJ_P0063356 Agl protein_coding protein_coding MGP_CASTEiJ_T0063357.1 MGP_CASTEiJ_G0026975.1 mouse_genomes_project 3 117326005 117387193 - MGP_CASTEiJ_P0063357 Agl protein_coding protein_coding MGP_CASTEiJ_T0063358.1 MGP_CASTEiJ_G0026975.1 mouse_genomes_project 3 117326549 117360758 - MGP_CASTEiJ_P0063358 Agl protein_coding protein_coding MGP_CASTEiJ_T0063359.1 MGP_CASTEiJ_G0026975.1 mouse_genomes_project 3 117328276 117387820 - MGP_CASTEiJ_P0063359 Agl protein_coding unknown_likely_coding MGP_CASTEiJ_T0063360.1 MGP_CASTEiJ_G0026975.1 mouse_genomes_project 3 117331573 117387812 - MGP_CASTEiJ_P0063360 Agl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063361.1 MGP_CASTEiJ_G0026975.1 mouse_genomes_project 3 117337663 117387899 - MGP_CASTEiJ_P0063361 Agl protein_coding protein_coding MGP_CASTEiJ_T0063362.1 MGP_CASTEiJ_G0026975.1 mouse_genomes_project 3 117359522 117361258 - MGP_CASTEiJ_P0063362 Agl protein_coding protein_coding MGP_CASTEiJ_T0063363.1 MGP_CASTEiJ_G0026975.1 mouse_genomes_project 3 117371067 117387801 - Agl protein_coding retained_intron MGP_CASTEiJ_T0063364.1 MGP_CASTEiJ_G0026975.1 mouse_genomes_project 3 117372425 117387621 - MGP_CASTEiJ_P0063364 Agl protein_coding protein_coding MGP_CASTEiJ_T0013497.1 MGP_CASTEiJ_G0011660.1 mouse_genomes_project 3 11212723 11213282 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007482.1 MGP_CASTEiJ_G0006136.1 mouse_genomes_project 3 117243246 117243670 + 4930512P04Rik lincRNA lincRNA MGP_CASTEiJ_T0062945.1 MGP_CASTEiJ_G0026879.1 mouse_genomes_project 3 105894620 105932921 + MGP_CASTEiJ_P0062945 Adora3 protein_coding protein_coding MGP_CASTEiJ_T0062950.1 MGP_CASTEiJ_G0026879.1 mouse_genomes_project 3 105929009 105933494 + MGP_CASTEiJ_P0062950 Adora3 protein_coding protein_coding MGP_CASTEiJ_T0062952.1 MGP_CASTEiJ_G0026879.1 mouse_genomes_project 3 105929283 105930935 + Adora3 protein_coding retained_intron MGP_CASTEiJ_T0001129.1 MGP_CASTEiJ_G0001062.1 mouse_genomes_project 3 48839115 48840448 - TEC TEC MGP_CASTEiJ_T0100965.1 MGP_CASTEiJ_G0037878.1 mouse_genomes_project 3 76289573 76289646 - Gm23644 snoRNA snoRNA MGP_CASTEiJ_T0007442.1 MGP_CASTEiJ_G0006102.1 mouse_genomes_project 3 95947129 95947697 + Gm26654 lincRNA lincRNA MGP_CASTEiJ_T0004259.1 MGP_CASTEiJ_G0003725.1 mouse_genomes_project 3 139628448 139630663 - Gm43087 antisense antisense MGP_CASTEiJ_T0001123.1 MGP_CASTEiJ_G0001056.1 mouse_genomes_project 3 43357723 43361001 + TEC TEC MGP_CASTEiJ_T0062856.1 MGP_CASTEiJ_G0026860.1 mouse_genomes_project 3 103773675 103831271 + MGP_CASTEiJ_P0062856 Ptpn22 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062857.1 MGP_CASTEiJ_G0026860.1 mouse_genomes_project 3 103773806 103831284 + MGP_CASTEiJ_P0062857 Ptpn22 protein_coding unknown_likely_coding MGP_CASTEiJ_T0062858.1 MGP_CASTEiJ_G0026860.1 mouse_genomes_project 3 103774435 103793498 + Ptpn22 protein_coding processed_transcript MGP_CASTEiJ_T0062859.1 MGP_CASTEiJ_G0026860.1 mouse_genomes_project 3 103794799 103796628 + Ptpn22 protein_coding retained_intron MGP_CASTEiJ_T0062860.1 MGP_CASTEiJ_G0026860.1 mouse_genomes_project 3 103802963 103805142 + Ptpn22 protein_coding retained_intron MGP_CASTEiJ_T0062861.1 MGP_CASTEiJ_G0026860.1 mouse_genomes_project 3 103803053 103821176 + Ptpn22 protein_coding processed_transcript MGP_CASTEiJ_T0062862.1 MGP_CASTEiJ_G0026860.1 mouse_genomes_project 3 103805597 103828485 + Ptpn22 protein_coding retained_intron MGP_CASTEiJ_T0062863.1 MGP_CASTEiJ_G0026860.1 mouse_genomes_project 3 103819827 103831273 + Ptpn22 protein_coding retained_intron MGP_CASTEiJ_T0059984.1 MGP_CASTEiJ_G0026229.1 mouse_genomes_project 3 7024464 7182656 - MGP_CASTEiJ_P0059984 Pag1 protein_coding protein_coding MGP_CASTEiJ_T0059985.1 MGP_CASTEiJ_G0026229.1 mouse_genomes_project 3 7030296 7182607 - MGP_CASTEiJ_P0059985 Pag1 protein_coding protein_coding MGP_CASTEiJ_T0059986.1 MGP_CASTEiJ_G0026229.1 mouse_genomes_project 3 7031165 7043416 - Pag1 protein_coding retained_intron MGP_CASTEiJ_T0059987.1 MGP_CASTEiJ_G0026229.1 mouse_genomes_project 3 7032078 7046425 - MGP_CASTEiJ_P0059987 Pag1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059988.1 MGP_CASTEiJ_G0026229.1 mouse_genomes_project 3 7091614 7182340 - Pag1 protein_coding retained_intron MGP_CASTEiJ_T0059989.1 MGP_CASTEiJ_G0026229.1 mouse_genomes_project 3 7176424 7182607 - Pag1 protein_coding processed_transcript MGP_CASTEiJ_T0007320.1 MGP_CASTEiJ_G0006014.1 mouse_genomes_project 3 34903853 34909932 + Gm12532 lincRNA lincRNA MGP_CASTEiJ_T0062581.1 MGP_CASTEiJ_G0026796.1 mouse_genomes_project 3 96495877 96509150 - MGP_CASTEiJ_P0062581 Gja8 protein_coding protein_coding MGP_CASTEiJ_T0062278.1 MGP_CASTEiJ_G0026725.1 mouse_genomes_project 3 94582296 94587421 + MGP_CASTEiJ_P0062278 protein_coding protein_coding MGP_CASTEiJ_T0064109.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147341327 147346546 + Odf2l protein_coding retained_intron MGP_CASTEiJ_T0064110.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147341328 147380658 + MGP_CASTEiJ_P0064110 Odf2l protein_coding protein_coding MGP_CASTEiJ_T0064111.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147341328 147380678 + MGP_CASTEiJ_P0064111 Odf2l protein_coding protein_coding MGP_CASTEiJ_T0064112.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147341339 147361375 + Odf2l protein_coding retained_intron MGP_CASTEiJ_T0064113.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147341339 147380648 + MGP_CASTEiJ_P0064113 Odf2l protein_coding protein_coding MGP_CASTEiJ_T0064114.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147341347 147361284 + Odf2l protein_coding retained_intron MGP_CASTEiJ_T0064115.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147341359 147380652 + MGP_CASTEiJ_P0064115 Odf2l protein_coding protein_coding MGP_CASTEiJ_T0064116.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147341360 147352997 + MGP_CASTEiJ_P0064116 Odf2l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064117.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147343152 147343808 + Odf2l protein_coding processed_transcript MGP_CASTEiJ_T0064118.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147343152 147350307 + MGP_CASTEiJ_P0064118 Odf2l protein_coding protein_coding MGP_CASTEiJ_T0064119.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147344826 147352989 + MGP_CASTEiJ_P0064119 Odf2l protein_coding protein_coding MGP_CASTEiJ_T0064120.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147351847 147368221 + MGP_CASTEiJ_P0064120 Odf2l protein_coding protein_coding MGP_CASTEiJ_T0064121.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147356606 147374870 + Odf2l protein_coding retained_intron MGP_CASTEiJ_T0064122.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147364123 147374870 + Odf2l protein_coding retained_intron MGP_CASTEiJ_T0064123.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147364334 147371695 + Odf2l protein_coding processed_transcript MGP_CASTEiJ_T0064124.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147364343 147380656 + Odf2l protein_coding retained_intron MGP_CASTEiJ_T0064125.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147364365 147374822 + MGP_CASTEiJ_P0064125 Odf2l protein_coding protein_coding MGP_CASTEiJ_T0064126.1 MGP_CASTEiJ_G0027112.1 mouse_genomes_project 3 147374810 147379421 + MGP_CASTEiJ_P0064126 Odf2l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001331.1 MGP_CASTEiJ_G0001261.1 mouse_genomes_project 3 155056995 155060055 - TEC TEC MGP_CASTEiJ_T0063051.1 MGP_CASTEiJ_G0026910.1 mouse_genomes_project 3 107959488 107961038 - Strip1 protein_coding retained_intron MGP_CASTEiJ_T0063052.1 MGP_CASTEiJ_G0026910.1 mouse_genomes_project 3 107959488 107978841 - MGP_CASTEiJ_P0063052 Strip1 protein_coding protein_coding MGP_CASTEiJ_T0063053.1 MGP_CASTEiJ_G0026910.1 mouse_genomes_project 3 107959491 107973998 - Strip1 protein_coding processed_transcript MGP_CASTEiJ_T0063054.1 MGP_CASTEiJ_G0026910.1 mouse_genomes_project 3 107963850 107967232 - Strip1 protein_coding processed_transcript MGP_CASTEiJ_T0063055.1 MGP_CASTEiJ_G0026910.1 mouse_genomes_project 3 107967608 107978841 - Strip1 protein_coding retained_intron MGP_CASTEiJ_T0013487.1 MGP_CASTEiJ_G0011650.1 mouse_genomes_project 3 7586290 7586422 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001060.1 MGP_CASTEiJ_G0000994.1 mouse_genomes_project 3 2432641 2435005 + TEC TEC MGP_CASTEiJ_T0001061.1 MGP_CASTEiJ_G0000994.1 mouse_genomes_project 3 2434551 2434884 + TEC TEC MGP_CASTEiJ_T0060137.1 MGP_CASTEiJ_G0026272.1 mouse_genomes_project 3 19303606 19456891 + MGP_CASTEiJ_P0060137 Tbl1xr1 protein_coding protein_coding MGP_CASTEiJ_T0060138.1 MGP_CASTEiJ_G0026272.1 mouse_genomes_project 3 19303681 19453058 + MGP_CASTEiJ_P0060138 Tbl1xr1 protein_coding protein_coding MGP_CASTEiJ_T0060139.1 MGP_CASTEiJ_G0026272.1 mouse_genomes_project 3 19303710 19427545 + Tbl1xr1 protein_coding processed_transcript MGP_CASTEiJ_T0060140.1 MGP_CASTEiJ_G0026272.1 mouse_genomes_project 3 19303786 19429983 + MGP_CASTEiJ_P0060140 Tbl1xr1 protein_coding protein_coding MGP_CASTEiJ_T0060141.1 MGP_CASTEiJ_G0026272.1 mouse_genomes_project 3 19303835 19428840 + Tbl1xr1 protein_coding processed_transcript MGP_CASTEiJ_T0060142.1 MGP_CASTEiJ_G0026272.1 mouse_genomes_project 3 19303890 19427513 + MGP_CASTEiJ_P0060142 Tbl1xr1 protein_coding protein_coding MGP_CASTEiJ_T0060143.1 MGP_CASTEiJ_G0026272.1 mouse_genomes_project 3 19304238 19455598 + MGP_CASTEiJ_P0060143 Tbl1xr1 protein_coding protein_coding MGP_CASTEiJ_T0060144.1 MGP_CASTEiJ_G0026272.1 mouse_genomes_project 3 19347074 19452275 + MGP_CASTEiJ_P0060144 Tbl1xr1 protein_coding protein_coding MGP_CASTEiJ_T0060145.1 MGP_CASTEiJ_G0026272.1 mouse_genomes_project 3 19371880 19428833 + MGP_CASTEiJ_P0060145 Tbl1xr1 protein_coding protein_coding MGP_CASTEiJ_T0060146.1 MGP_CASTEiJ_G0026272.1 mouse_genomes_project 3 19381583 19453383 + MGP_CASTEiJ_P0060146 Tbl1xr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060147.1 MGP_CASTEiJ_G0026272.1 mouse_genomes_project 3 19442278 19449765 + MGP_CASTEiJ_P0060147 Tbl1xr1 protein_coding protein_coding MGP_CASTEiJ_T0100968.1 MGP_CASTEiJ_G0037881.1 mouse_genomes_project 3 85563028 85563147 + Gm25876 snoRNA snoRNA MGP_CASTEiJ_T0007558.1 MGP_CASTEiJ_G0006200.1 mouse_genomes_project 3 146002023 146076310 - Gm42707 lincRNA lincRNA MGP_CASTEiJ_T0007560.1 MGP_CASTEiJ_G0006200.1 mouse_genomes_project 3 146033734 146075935 - Gm42707 lincRNA lincRNA MGP_CASTEiJ_T0060127.1 MGP_CASTEiJ_G0026268.1 mouse_genomes_project 3 17350305 17385693 - MGP_CASTEiJ_P0060127 Gyg protein_coding protein_coding MGP_CASTEiJ_T0060128.1 MGP_CASTEiJ_G0026268.1 mouse_genomes_project 3 17350308 17385472 - MGP_CASTEiJ_P0060128 Gyg protein_coding protein_coding MGP_CASTEiJ_T0060129.1 MGP_CASTEiJ_G0026268.1 mouse_genomes_project 3 17350368 17385445 - MGP_CASTEiJ_P0060129 Gyg protein_coding protein_coding MGP_CASTEiJ_T0060130.1 MGP_CASTEiJ_G0026268.1 mouse_genomes_project 3 17350777 17351763 - Gyg protein_coding retained_intron MGP_CASTEiJ_T0063314.1 MGP_CASTEiJ_G0026967.1 mouse_genomes_project 3 117061598 117080994 - MGP_CASTEiJ_P0063314 Rtca protein_coding protein_coding MGP_CASTEiJ_T0063315.1 MGP_CASTEiJ_G0026967.1 mouse_genomes_project 3 117061875 117068721 - Rtca protein_coding retained_intron MGP_CASTEiJ_T0063316.1 MGP_CASTEiJ_G0026967.1 mouse_genomes_project 3 117066905 117080810 - MGP_CASTEiJ_P0063316 Rtca protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063317.1 MGP_CASTEiJ_G0026967.1 mouse_genomes_project 3 117068446 117080851 - MGP_CASTEiJ_P0063317 Rtca protein_coding protein_coding MGP_CASTEiJ_T0063318.1 MGP_CASTEiJ_G0026967.1 mouse_genomes_project 3 117072308 117080919 - MGP_CASTEiJ_P0063318 Rtca protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098887.1 MGP_CASTEiJ_G0035811.1 mouse_genomes_project 3 100220769 100223469 + Gm42868 sense_intronic sense_intronic MGP_CASTEiJ_T0001172.1 MGP_CASTEiJ_G0001103.1 mouse_genomes_project 3 56174610 56178568 - TEC TEC MGP_CASTEiJ_T0062698.1 MGP_CASTEiJ_G0026827.1 mouse_genomes_project 3 100659239 100668644 + MGP_CASTEiJ_P0062698 Trim45 protein_coding protein_coding MGP_CASTEiJ_T0062699.1 MGP_CASTEiJ_G0026827.1 mouse_genomes_project 3 100659512 100670947 + MGP_CASTEiJ_P0062699 Trim45 protein_coding protein_coding MGP_CASTEiJ_T0062700.1 MGP_CASTEiJ_G0026827.1 mouse_genomes_project 3 100659530 100673816 + MGP_CASTEiJ_P0062700 Trim45 protein_coding protein_coding MGP_CASTEiJ_T0062701.1 MGP_CASTEiJ_G0026827.1 mouse_genomes_project 3 100659957 100668999 + MGP_CASTEiJ_P0062701 Trim45 protein_coding protein_coding MGP_CASTEiJ_T0007476.1 MGP_CASTEiJ_G0006131.1 mouse_genomes_project 3 112420729 112631596 + lincRNA lincRNA MGP_CASTEiJ_T0061674.1 MGP_CASTEiJ_G0026574.1 mouse_genomes_project 3 88952524 88973242 - MGP_CASTEiJ_P0061674 Gm43738 protein_coding protein_coding MGP_CASTEiJ_T0001177.1 MGP_CASTEiJ_G0001108.1 mouse_genomes_project 3 58287742 58290164 + TEC TEC MGP_CASTEiJ_T0062054.1 MGP_CASTEiJ_G0026643.1 mouse_genomes_project 3 90855182 90857120 - MGP_CASTEiJ_P0062054 protein_coding protein_coding MGP_CASTEiJ_T0062751.1 MGP_CASTEiJ_G0026840.1 mouse_genomes_project 3 102523691 102524650 - MGP_CASTEiJ_P0062751 protein_coding protein_coding MGP_CASTEiJ_T0060185.1 MGP_CASTEiJ_G0026281.1 mouse_genomes_project 3 25228025 25259614 - MGP_CASTEiJ_P0060185 Tmem212 protein_coding protein_coding MGP_CASTEiJ_T0062066.1 MGP_CASTEiJ_G0026653.1 mouse_genomes_project 3 91608195 91609502 + MGP_CASTEiJ_P0062066 Sprr2e protein_coding protein_coding MGP_CASTEiJ_T0007570.1 MGP_CASTEiJ_G0006210.1 mouse_genomes_project 3 149776026 149781364 + Gm37041 lincRNA lincRNA MGP_CASTEiJ_T0060092.1 MGP_CASTEiJ_G0026264.1 mouse_genomes_project 3 16917569 16919565 - MGP_CASTEiJ_P0060092 Crh protein_coding protein_coding MGP_CASTEiJ_T0060784.1 MGP_CASTEiJ_G0026383.1 mouse_genomes_project 3 53199325 53215438 + MGP_CASTEiJ_P0060784 Alg5 protein_coding protein_coding MGP_CASTEiJ_T0060785.1 MGP_CASTEiJ_G0026383.1 mouse_genomes_project 3 53199345 53217010 + MGP_CASTEiJ_P0060785 Alg5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060786.1 MGP_CASTEiJ_G0026383.1 mouse_genomes_project 3 53199353 53211129 + MGP_CASTEiJ_P0060786 Alg5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060787.1 MGP_CASTEiJ_G0026383.1 mouse_genomes_project 3 53199359 53203839 + Alg5 protein_coding retained_intron MGP_CASTEiJ_T0001223.1 MGP_CASTEiJ_G0001154.1 mouse_genomes_project 3 97250957 97254746 + TEC TEC MGP_CASTEiJ_T0062100.1 MGP_CASTEiJ_G0026683.1 mouse_genomes_project 3 92218920 92219869 - MGP_CASTEiJ_P0062100 protein_coding protein_coding MGP_CASTEiJ_T0001274.1 MGP_CASTEiJ_G0001205.1 mouse_genomes_project 3 128113395 128114434 - TEC TEC MGP_CASTEiJ_T0060998.1 MGP_CASTEiJ_G0026432.1 mouse_genomes_project 3 62686007 62718937 - MGP_CASTEiJ_P0060998 Slc33a1 protein_coding protein_coding MGP_CASTEiJ_T0060999.1 MGP_CASTEiJ_G0026432.1 mouse_genomes_project 3 62692926 62719039 - MGP_CASTEiJ_P0060999 Slc33a1 protein_coding protein_coding MGP_CASTEiJ_T0061000.1 MGP_CASTEiJ_G0026432.1 mouse_genomes_project 3 62696668 62718643 - MGP_CASTEiJ_P0061000 Slc33a1 protein_coding protein_coding MGP_CASTEiJ_T0007469.1 MGP_CASTEiJ_G0006125.1 mouse_genomes_project 3 107392570 107401506 + A930002I21Rik lincRNA lincRNA MGP_CASTEiJ_T0007470.1 MGP_CASTEiJ_G0006125.1 mouse_genomes_project 3 107392572 107400325 + A930002I21Rik lincRNA lincRNA MGP_CASTEiJ_T0061957.1 MGP_CASTEiJ_G0026620.1 mouse_genomes_project 3 90236786 90246747 + MGP_CASTEiJ_P0061957 Crtc2 protein_coding protein_coding MGP_CASTEiJ_T0061958.1 MGP_CASTEiJ_G0026620.1 mouse_genomes_project 3 90236919 90246742 + Crtc2 protein_coding retained_intron MGP_CASTEiJ_T0061959.1 MGP_CASTEiJ_G0026620.1 mouse_genomes_project 3 90236919 90246742 + Crtc2 protein_coding retained_intron MGP_CASTEiJ_T0061960.1 MGP_CASTEiJ_G0026620.1 mouse_genomes_project 3 90236947 90241255 + Crtc2 protein_coding retained_intron MGP_CASTEiJ_T0061961.1 MGP_CASTEiJ_G0026620.1 mouse_genomes_project 3 90236964 90246742 + Crtc2 protein_coding processed_transcript MGP_CASTEiJ_T0061962.1 MGP_CASTEiJ_G0026620.1 mouse_genomes_project 3 90239916 90246742 + MGP_CASTEiJ_P0061962 Crtc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061963.1 MGP_CASTEiJ_G0026620.1 mouse_genomes_project 3 90240672 90242114 + Crtc2 protein_coding retained_intron MGP_CASTEiJ_T0061964.1 MGP_CASTEiJ_G0026620.1 mouse_genomes_project 3 90241586 90242943 + Crtc2 protein_coding retained_intron MGP_CASTEiJ_T0011209.1 MGP_CASTEiJ_G0009397.1 mouse_genomes_project 3 57612737 57612813 + Gm27793 misc_RNA misc_RNA MGP_CASTEiJ_T0013927.1 MGP_CASTEiJ_G0012090.1 mouse_genomes_project 3 160831959 160832369 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013736.1 MGP_CASTEiJ_G0011899.1 mouse_genomes_project 3 92756537 92757315 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060317.1 MGP_CASTEiJ_G0026306.1 mouse_genomes_project 3 30042075 30052830 + MGP_CASTEiJ_P0060317 Zfp639 protein_coding protein_coding MGP_CASTEiJ_T0060318.1 MGP_CASTEiJ_G0026306.1 mouse_genomes_project 3 30042351 30052740 + MGP_CASTEiJ_P0060318 Zfp639 protein_coding protein_coding MGP_CASTEiJ_T0060319.1 MGP_CASTEiJ_G0026306.1 mouse_genomes_project 3 30042480 30051563 + MGP_CASTEiJ_P0060319 Zfp639 protein_coding protein_coding MGP_CASTEiJ_T0060320.1 MGP_CASTEiJ_G0026306.1 mouse_genomes_project 3 30042712 30044993 + Zfp639 protein_coding processed_transcript MGP_CASTEiJ_T0060321.1 MGP_CASTEiJ_G0026306.1 mouse_genomes_project 3 30043994 30051626 + Zfp639 protein_coding retained_intron MGP_CASTEiJ_T0060322.1 MGP_CASTEiJ_G0026306.1 mouse_genomes_project 3 30044817 30051565 + MGP_CASTEiJ_P0060322 Zfp639 protein_coding protein_coding MGP_CASTEiJ_T0060323.1 MGP_CASTEiJ_G0026306.1 mouse_genomes_project 3 30047099 30052682 + MGP_CASTEiJ_P0060323 Zfp639 protein_coding protein_coding MGP_CASTEiJ_T0060324.1 MGP_CASTEiJ_G0026306.1 mouse_genomes_project 3 30049075 30052514 + MGP_CASTEiJ_P0060324 Zfp639 protein_coding protein_coding MGP_CASTEiJ_T0060325.1 MGP_CASTEiJ_G0026306.1 mouse_genomes_project 3 30050795 30051557 + Zfp639 protein_coding retained_intron MGP_CASTEiJ_T0013517.1 MGP_CASTEiJ_G0011680.1 mouse_genomes_project 3 15777552 15778755 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004172.1 MGP_CASTEiJ_G0003670.1 mouse_genomes_project 3 95706482 95711433 - Gm17690 antisense antisense MGP_CASTEiJ_T0004173.1 MGP_CASTEiJ_G0003670.1 mouse_genomes_project 3 95710393 95711435 - Gm17690 antisense antisense MGP_CASTEiJ_T0011200.1 MGP_CASTEiJ_G0009388.1 mouse_genomes_project 3 11306252 11306547 + Gm25981 misc_RNA misc_RNA MGP_CASTEiJ_T0061037.1 MGP_CASTEiJ_G0026439.1 mouse_genomes_project 3 64862618 65090018 - MGP_CASTEiJ_P0061037 Veph1 protein_coding protein_coding MGP_CASTEiJ_T0061038.1 MGP_CASTEiJ_G0026439.1 mouse_genomes_project 3 64865677 64941895 - Veph1 protein_coding processed_transcript MGP_CASTEiJ_T0061041.1 MGP_CASTEiJ_G0026439.1 mouse_genomes_project 3 65045916 65089930 - Veph1 protein_coding retained_intron MGP_CASTEiJ_T0013679.1 MGP_CASTEiJ_G0011842.1 mouse_genomes_project 3 71152419 71152637 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098910.1 MGP_CASTEiJ_G0035834.1 mouse_genomes_project 3 104043805 104045453 - Gm42699 sense_intronic sense_intronic MGP_CASTEiJ_T0004180.1 MGP_CASTEiJ_G0003676.1 mouse_genomes_project 3 96581933 96583983 - 9230114J08Rik antisense antisense MGP_CASTEiJ_T0013521.1 MGP_CASTEiJ_G0011684.1 mouse_genomes_project 3 16799089 16799305 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007397.1 MGP_CASTEiJ_G0006071.1 mouse_genomes_project 3 80389207 80390037 + Gm42476 lincRNA lincRNA MGP_CASTEiJ_T0062104.1 MGP_CASTEiJ_G0026687.1 mouse_genomes_project 3 92297579 92297927 + MGP_CASTEiJ_P0062104 Lce3e protein_coding protein_coding MGP_CASTEiJ_T0062105.1 MGP_CASTEiJ_G0026688.1 mouse_genomes_project 3 92319658 92321141 - MGP_CASTEiJ_P0062105 Crct1 protein_coding protein_coding MGP_CASTEiJ_T0062106.1 MGP_CASTEiJ_G0026688.1 mouse_genomes_project 3 92319972 92321123 - MGP_CASTEiJ_P0062106 Crct1 protein_coding protein_coding MGP_CASTEiJ_T0099729.1 MGP_CASTEiJ_G0036642.1 mouse_genomes_project 3 94545926 94546033 + Gm22301 snRNA snRNA MGP_CASTEiJ_T0013746.1 MGP_CASTEiJ_G0011909.1 mouse_genomes_project 3 95314421 95315316 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099746.1 MGP_CASTEiJ_G0036659.1 mouse_genomes_project 3 121166906 121167012 - Gm23733 snRNA snRNA MGP_CASTEiJ_T0001165.1 MGP_CASTEiJ_G0001096.1 mouse_genomes_project 3 53828391 53830500 + TEC TEC MGP_CASTEiJ_T0013634.1 MGP_CASTEiJ_G0011797.1 mouse_genomes_project 3 58365995 58366137 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007559.1 MGP_CASTEiJ_G0006201.1 mouse_genomes_project 3 146018160 146019114 + Gm42708 lincRNA lincRNA MGP_CASTEiJ_T0001141.1 MGP_CASTEiJ_G0001074.1 mouse_genomes_project 3 49860940 49861499 + TEC TEC MGP_CASTEiJ_T0017211.1 MGP_CASTEiJ_G0014820.1 mouse_genomes_project 3 50493108 50494489 + Gm38132 processed_transcript lincRNA MGP_CASTEiJ_T0017212.1 MGP_CASTEiJ_G0014820.1 mouse_genomes_project 3 50493137 50494146 + Gm38132 processed_transcript retained_intron MGP_CASTEiJ_T0063754.1 MGP_CASTEiJ_G0027044.1 mouse_genomes_project 3 132887760 132972119 - MGP_CASTEiJ_P0063754 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063755.1 MGP_CASTEiJ_G0027044.1 mouse_genomes_project 3 132910119 132912930 - MGP_CASTEiJ_P0063755 protein_coding protein_coding MGP_CASTEiJ_T0063756.1 MGP_CASTEiJ_G0027044.1 mouse_genomes_project 3 132910178 132972392 - MGP_CASTEiJ_P0063756 protein_coding protein_coding MGP_CASTEiJ_T0063757.1 MGP_CASTEiJ_G0027044.1 mouse_genomes_project 3 132910243 132973325 - protein_coding processed_transcript MGP_CASTEiJ_T0013839.1 MGP_CASTEiJ_G0012002.1 mouse_genomes_project 3 124525061 124525781 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004106.1 MGP_CASTEiJ_G0003621.1 mouse_genomes_project 3 39342758 39344178 - Gm31266 antisense antisense MGP_CASTEiJ_T0013776.1 MGP_CASTEiJ_G0011939.1 mouse_genomes_project 3 103039514 103040278 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063850.1 MGP_CASTEiJ_G0027062.1 mouse_genomes_project 3 137034706 137051462 - MGP_CASTEiJ_P0063850 Cisd2 protein_coding protein_coding MGP_CASTEiJ_T0063851.1 MGP_CASTEiJ_G0027062.1 mouse_genomes_project 3 137038353 137050939 - MGP_CASTEiJ_P0063851 Cisd2 protein_coding protein_coding MGP_CASTEiJ_T0063852.1 MGP_CASTEiJ_G0027062.1 mouse_genomes_project 3 137047515 137050936 - Cisd2 protein_coding retained_intron MGP_CASTEiJ_T0063853.1 MGP_CASTEiJ_G0027062.1 mouse_genomes_project 3 137048407 137050614 - Cisd2 protein_coding processed_transcript MGP_CASTEiJ_T0062637.1 MGP_CASTEiJ_G0026807.1 mouse_genomes_project 3 97836920 97838362 + MGP_CASTEiJ_P0062637 Adam30 protein_coding protein_coding MGP_CASTEiJ_T0062638.1 MGP_CASTEiJ_G0026807.1 mouse_genomes_project 3 97836950 97840460 + MGP_CASTEiJ_P0062638 Adam30 protein_coding protein_coding MGP_CASTEiJ_T0063962.1 MGP_CASTEiJ_G0027082.1 mouse_genomes_project 3 139981968 139997704 + MGP_CASTEiJ_P0063962 Adh7 protein_coding protein_coding MGP_CASTEiJ_T0063963.1 MGP_CASTEiJ_G0027082.1 mouse_genomes_project 3 139985729 139987350 + Adh7 protein_coding retained_intron MGP_CASTEiJ_T0063964.1 MGP_CASTEiJ_G0027082.1 mouse_genomes_project 3 139992329 139995745 + Adh7 protein_coding processed_transcript MGP_CASTEiJ_T0001083.1 MGP_CASTEiJ_G0001016.1 mouse_genomes_project 3 27951195 27952061 + TEC TEC MGP_CASTEiJ_T0061545.1 MGP_CASTEiJ_G0026555.1 mouse_genomes_project 3 88151895 88152760 - Bglap protein_coding retained_intron MGP_CASTEiJ_T0061546.1 MGP_CASTEiJ_G0026555.1 mouse_genomes_project 3 88151897 88152862 - MGP_CASTEiJ_P0061546 Bglap protein_coding protein_coding MGP_CASTEiJ_T0013718.1 MGP_CASTEiJ_G0011881.1 mouse_genomes_project 3 87690509 87690930 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013921.1 MGP_CASTEiJ_G0012084.1 mouse_genomes_project 3 156913058 156913510 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101010.1 MGP_CASTEiJ_G0037923.1 mouse_genomes_project 3 156682179 156682259 - Snord45c snoRNA snoRNA MGP_CASTEiJ_T0062733.1 MGP_CASTEiJ_G0026837.1 mouse_genomes_project 3 101902471 101968149 + MGP_CASTEiJ_P0062733 Casq2 protein_coding protein_coding MGP_CASTEiJ_T0062734.1 MGP_CASTEiJ_G0026837.1 mouse_genomes_project 3 101902602 101968149 + MGP_CASTEiJ_P0062734 Casq2 protein_coding protein_coding MGP_CASTEiJ_T0062735.1 MGP_CASTEiJ_G0026837.1 mouse_genomes_project 3 101902695 101966963 + MGP_CASTEiJ_P0062735 Casq2 protein_coding protein_coding MGP_CASTEiJ_T0062736.1 MGP_CASTEiJ_G0026837.1 mouse_genomes_project 3 101945546 101966980 + Casq2 protein_coding processed_transcript MGP_CASTEiJ_T0062737.1 MGP_CASTEiJ_G0026837.1 mouse_genomes_project 3 101965682 101967220 + Casq2 protein_coding retained_intron MGP_CASTEiJ_T0060663.1 MGP_CASTEiJ_G0026361.1 mouse_genomes_project 3 49463817 49490697 + MGP_CASTEiJ_P0060663 Noct protein_coding protein_coding MGP_CASTEiJ_T0102265.1 MGP_CASTEiJ_G0038990.1 mouse_genomes_project 3 58146469 58256561 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0004142.1 MGP_CASTEiJ_G0003649.1 mouse_genomes_project 3 86413030 86423639 - Gm37876 antisense antisense MGP_CASTEiJ_T0062073.1 MGP_CASTEiJ_G0026659.1 mouse_genomes_project 3 91703927 91705873 - MGP_CASTEiJ_P0062073 Sprr1b protein_coding protein_coding MGP_CASTEiJ_T0061443.1 MGP_CASTEiJ_G0026535.1 mouse_genomes_project 3 87619814 87629636 + MGP_CASTEiJ_P0061443 Hdgf protein_coding protein_coding MGP_CASTEiJ_T0061444.1 MGP_CASTEiJ_G0026535.1 mouse_genomes_project 3 87620550 87628152 + MGP_CASTEiJ_P0061444 Hdgf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061445.1 MGP_CASTEiJ_G0026535.1 mouse_genomes_project 3 87621032 87627669 + Hdgf protein_coding processed_transcript MGP_CASTEiJ_T0061446.1 MGP_CASTEiJ_G0026535.1 mouse_genomes_project 3 87623536 87627685 + Hdgf protein_coding processed_transcript MGP_CASTEiJ_T0061447.1 MGP_CASTEiJ_G0026535.1 mouse_genomes_project 3 87627463 87628280 + Hdgf protein_coding retained_intron MGP_CASTEiJ_T0007526.1 MGP_CASTEiJ_G0006171.1 mouse_genomes_project 3 136013252 136035886 - 4930539C22Rik lincRNA lincRNA MGP_CASTEiJ_T0099706.1 MGP_CASTEiJ_G0036619.1 mouse_genomes_project 3 65824697 65824804 + Gm22295 snRNA snRNA MGP_CASTEiJ_T0062366.1 MGP_CASTEiJ_G0026741.1 mouse_genomes_project 3 95039090 95066424 + MGP_CASTEiJ_P0062366 Hormad1 protein_coding protein_coding MGP_CASTEiJ_T0062367.1 MGP_CASTEiJ_G0026741.1 mouse_genomes_project 3 95039091 95065647 + MGP_CASTEiJ_P0062367 Hormad1 protein_coding protein_coding MGP_CASTEiJ_T0062368.1 MGP_CASTEiJ_G0026741.1 mouse_genomes_project 3 95039091 95066633 + MGP_CASTEiJ_P0062368 Hormad1 protein_coding protein_coding MGP_CASTEiJ_T0062369.1 MGP_CASTEiJ_G0026741.1 mouse_genomes_project 3 95039091 95066424 + MGP_CASTEiJ_P0062369 Hormad1 protein_coding protein_coding MGP_CASTEiJ_T0062155.1 MGP_CASTEiJ_G0026706.1 mouse_genomes_project 3 93885852 93896714 - MGP_CASTEiJ_P0062155 Riiad1 protein_coding protein_coding MGP_CASTEiJ_T0062156.1 MGP_CASTEiJ_G0026706.1 mouse_genomes_project 3 93885854 93905270 - Riiad1 protein_coding processed_transcript MGP_CASTEiJ_T0062157.1 MGP_CASTEiJ_G0026706.1 mouse_genomes_project 3 93890110 93896045 - Riiad1 protein_coding processed_transcript MGP_CASTEiJ_T0007548.1 MGP_CASTEiJ_G0006191.1 mouse_genomes_project 3 145472403 145475751 + Gm43612 lincRNA lincRNA MGP_CASTEiJ_T0062535.1 MGP_CASTEiJ_G0026786.1 mouse_genomes_project 3 96199013 96222381 + MGP_CASTEiJ_P0062535 Itga10 protein_coding protein_coding MGP_CASTEiJ_T0062536.1 MGP_CASTEiJ_G0026786.1 mouse_genomes_project 3 96199013 96222375 + MGP_CASTEiJ_P0062536 Itga10 protein_coding protein_coding MGP_CASTEiJ_T0062537.1 MGP_CASTEiJ_G0026786.1 mouse_genomes_project 3 96212440 96218076 + Itga10 protein_coding retained_intron MGP_CASTEiJ_T0013609.1 MGP_CASTEiJ_G0011772.1 mouse_genomes_project 3 49912232 49912655 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062980.1 MGP_CASTEiJ_G0026888.1 mouse_genomes_project 3 106190366 106640601 - MGP_CASTEiJ_P0062980 Chil3 protein_coding protein_coding MGP_CASTEiJ_T0062981.1 MGP_CASTEiJ_G0026888.1 mouse_genomes_project 3 106199117 106628451 - Chil3 protein_coding retained_intron MGP_CASTEiJ_T0062984.1 MGP_CASTEiJ_G0026888.1 mouse_genomes_project 3 106524213 106525328 - MGP_CASTEiJ_P0062984 Chil3 protein_coding protein_coding MGP_CASTEiJ_T0001088.1 MGP_CASTEiJ_G0001021.1 mouse_genomes_project 3 29893390 29894801 - TEC TEC MGP_CASTEiJ_T0099732.1 MGP_CASTEiJ_G0036645.1 mouse_genomes_project 3 95967324 95967489 + Gm24136 snRNA snRNA MGP_CASTEiJ_T0064000.1 MGP_CASTEiJ_G0027090.1 mouse_genomes_project 3 140749128 140905232 - MGP_CASTEiJ_P0064000 Rap1gds1 protein_coding protein_coding MGP_CASTEiJ_T0064001.1 MGP_CASTEiJ_G0027090.1 mouse_genomes_project 3 140749132 140905168 - MGP_CASTEiJ_P0064001 Rap1gds1 protein_coding protein_coding MGP_CASTEiJ_T0064002.1 MGP_CASTEiJ_G0027090.1 mouse_genomes_project 3 140749136 140905101 - MGP_CASTEiJ_P0064002 Rap1gds1 protein_coding protein_coding MGP_CASTEiJ_T0064003.1 MGP_CASTEiJ_G0027090.1 mouse_genomes_project 3 140759756 140793183 - MGP_CASTEiJ_P0064003 Rap1gds1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064004.1 MGP_CASTEiJ_G0027090.1 mouse_genomes_project 3 140763482 140905171 - MGP_CASTEiJ_P0064004 Rap1gds1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064005.1 MGP_CASTEiJ_G0027090.1 mouse_genomes_project 3 140763485 140905179 - MGP_CASTEiJ_P0064005 Rap1gds1 protein_coding protein_coding MGP_CASTEiJ_T0064006.1 MGP_CASTEiJ_G0027090.1 mouse_genomes_project 3 140782515 140809589 - Rap1gds1 protein_coding retained_intron MGP_CASTEiJ_T0064007.1 MGP_CASTEiJ_G0027090.1 mouse_genomes_project 3 140841492 140905224 - Rap1gds1 protein_coding retained_intron MGP_CASTEiJ_T0064008.1 MGP_CASTEiJ_G0027090.1 mouse_genomes_project 3 140849020 140904829 - Rap1gds1 protein_coding processed_transcript MGP_CASTEiJ_T0064009.1 MGP_CASTEiJ_G0027090.1 mouse_genomes_project 3 140879302 140905171 - Rap1gds1 protein_coding retained_intron MGP_CASTEiJ_T0060305.1 MGP_CASTEiJ_G0026300.1 mouse_genomes_project 3 28673763 28691246 + MGP_CASTEiJ_P0060305 Cldn11 protein_coding protein_coding MGP_CASTEiJ_T0100981.1 MGP_CASTEiJ_G0037894.1 mouse_genomes_project 3 96285877 96286013 - Gm22581 snoRNA snoRNA MGP_CASTEiJ_T0102279.1 MGP_CASTEiJ_G0039004.1 mouse_genomes_project 3 83310955 83331209 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0061231.1 MGP_CASTEiJ_G0026484.1 mouse_genomes_project 3 80186828 80258787 - MGP_CASTEiJ_P0061231 Glrb protein_coding protein_coding MGP_CASTEiJ_T0061232.1 MGP_CASTEiJ_G0026484.1 mouse_genomes_project 3 80186828 80258741 - MGP_CASTEiJ_P0061232 Glrb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061233.1 MGP_CASTEiJ_G0026484.1 mouse_genomes_project 3 80188189 80257216 - MGP_CASTEiJ_P0061233 Glrb protein_coding protein_coding MGP_CASTEiJ_T0061234.1 MGP_CASTEiJ_G0026484.1 mouse_genomes_project 3 80198755 80258652 - MGP_CASTEiJ_P0061234 Glrb protein_coding protein_coding MGP_CASTEiJ_T0061235.1 MGP_CASTEiJ_G0026484.1 mouse_genomes_project 3 80207419 80258713 - MGP_CASTEiJ_P0061235 Glrb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0007353.1 MGP_CASTEiJ_G0006037.1 mouse_genomes_project 3 50504937 50507182 + Gm37170 lincRNA lincRNA MGP_CASTEiJ_T0061400.1 MGP_CASTEiJ_G0026527.1 mouse_genomes_project 3 87218497 87233212 + MGP_CASTEiJ_P0061400 Etv3 protein_coding protein_coding MGP_CASTEiJ_T0061401.1 MGP_CASTEiJ_G0026527.1 mouse_genomes_project 3 87218668 87233198 + MGP_CASTEiJ_P0061401 Etv3 protein_coding protein_coding MGP_CASTEiJ_T0061402.1 MGP_CASTEiJ_G0026527.1 mouse_genomes_project 3 87218697 87233212 + Etv3 protein_coding retained_intron MGP_CASTEiJ_T0061403.1 MGP_CASTEiJ_G0026527.1 mouse_genomes_project 3 87218704 87224105 + MGP_CASTEiJ_P0061403 Etv3 protein_coding protein_coding MGP_CASTEiJ_T0061404.1 MGP_CASTEiJ_G0026527.1 mouse_genomes_project 3 87218708 87224108 + Etv3 protein_coding retained_intron MGP_CASTEiJ_T0007258.1 MGP_CASTEiJ_G0005968.1 mouse_genomes_project 3 2743357 2745692 - 4930555M17Rik lincRNA lincRNA MGP_CASTEiJ_T0007464.1 MGP_CASTEiJ_G0006122.1 mouse_genomes_project 3 105836438 105838380 + Gm5547 lincRNA lincRNA MGP_CASTEiJ_T0007465.1 MGP_CASTEiJ_G0006122.1 mouse_genomes_project 3 105836465 105838373 + Gm5547 lincRNA lincRNA MGP_CASTEiJ_T0007466.1 MGP_CASTEiJ_G0006122.1 mouse_genomes_project 3 105837598 105838381 + Gm5547 lincRNA lincRNA MGP_CASTEiJ_T0102284.1 MGP_CASTEiJ_G0039009.1 mouse_genomes_project 3 89914258 89919095 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0064308.1 MGP_CASTEiJ_G0027144.1 mouse_genomes_project 3 154946285 155004835 - MGP_CASTEiJ_P0064308 Fam73a protein_coding protein_coding MGP_CASTEiJ_T0064309.1 MGP_CASTEiJ_G0027144.1 mouse_genomes_project 3 154948366 155004833 - MGP_CASTEiJ_P0064309 Fam73a protein_coding protein_coding MGP_CASTEiJ_T0064310.1 MGP_CASTEiJ_G0027144.1 mouse_genomes_project 3 154955251 155004811 - MGP_CASTEiJ_P0064310 Fam73a protein_coding protein_coding MGP_CASTEiJ_T0064311.1 MGP_CASTEiJ_G0027144.1 mouse_genomes_project 3 154955418 154959873 - Fam73a protein_coding retained_intron MGP_CASTEiJ_T0064312.1 MGP_CASTEiJ_G0027144.1 mouse_genomes_project 3 154964830 154992081 - MGP_CASTEiJ_P0064312 Fam73a protein_coding protein_coding MGP_CASTEiJ_T0064313.1 MGP_CASTEiJ_G0027144.1 mouse_genomes_project 3 154965004 154972043 - Fam73a protein_coding retained_intron MGP_CASTEiJ_T0064314.1 MGP_CASTEiJ_G0027144.1 mouse_genomes_project 3 154971586 155002549 - MGP_CASTEiJ_P0064314 Fam73a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064315.1 MGP_CASTEiJ_G0027144.1 mouse_genomes_project 3 155002095 155004812 - Fam73a protein_coding retained_intron MGP_CASTEiJ_T0063319.1 MGP_CASTEiJ_G0026968.1 mouse_genomes_project 3 117085880 117129302 + MGP_CASTEiJ_P0063319 Dbt protein_coding protein_coding MGP_CASTEiJ_T0063320.1 MGP_CASTEiJ_G0026968.1 mouse_genomes_project 3 117085929 117116974 + MGP_CASTEiJ_P0063320 Dbt protein_coding protein_coding MGP_CASTEiJ_T0063321.1 MGP_CASTEiJ_G0026968.1 mouse_genomes_project 3 117085938 117116996 + MGP_CASTEiJ_P0063321 Dbt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063322.1 MGP_CASTEiJ_G0026968.1 mouse_genomes_project 3 117094555 117112228 + Dbt protein_coding retained_intron MGP_CASTEiJ_T0060048.1 MGP_CASTEiJ_G0026249.1 mouse_genomes_project 3 12297867 12299900 + Car3 protein_coding retained_intron MGP_CASTEiJ_T0060049.1 MGP_CASTEiJ_G0026249.1 mouse_genomes_project 3 12297893 12306804 + MGP_CASTEiJ_P0060049 Car3 protein_coding protein_coding MGP_CASTEiJ_T0060050.1 MGP_CASTEiJ_G0026249.1 mouse_genomes_project 3 12303440 12306348 + Car3 protein_coding retained_intron MGP_CASTEiJ_T0063028.1 MGP_CASTEiJ_G0026900.1 mouse_genomes_project 3 107529256 107539696 - MGP_CASTEiJ_P0063028 Cym protein_coding protein_coding MGP_CASTEiJ_T0063049.1 MGP_CASTEiJ_G0026908.1 mouse_genomes_project 3 107895448 107896843 - MGP_CASTEiJ_P0063049 Ubl4b protein_coding protein_coding MGP_CASTEiJ_T0001211.1 MGP_CASTEiJ_G0001142.1 mouse_genomes_project 3 92629648 92632195 + TEC TEC MGP_CASTEiJ_T0061353.1 MGP_CASTEiJ_G0026514.1 mouse_genomes_project 3 85472966 85494254 - MGP_CASTEiJ_P0061353 Glt28d2 protein_coding protein_coding MGP_CASTEiJ_T0010263.1 MGP_CASTEiJ_G0008451.1 mouse_genomes_project 3 128759395 128759463 + Mir302c miRNA miRNA MGP_CASTEiJ_T0061157.1 MGP_CASTEiJ_G0026470.1 mouse_genomes_project 3 74570822 74574937 - Pdcd10 protein_coding retained_intron MGP_CASTEiJ_T0061158.1 MGP_CASTEiJ_G0026470.1 mouse_genomes_project 3 74571066 74599755 - MGP_CASTEiJ_P0061158 Pdcd10 protein_coding protein_coding MGP_CASTEiJ_T0061159.1 MGP_CASTEiJ_G0026470.1 mouse_genomes_project 3 74582786 74621618 - MGP_CASTEiJ_P0061159 Pdcd10 protein_coding protein_coding MGP_CASTEiJ_T0061160.1 MGP_CASTEiJ_G0026470.1 mouse_genomes_project 3 74587284 74621696 - Pdcd10 protein_coding retained_intron MGP_CASTEiJ_T0101775.1 MGP_CASTEiJ_G0038558.1 mouse_genomes_project 3 63532034 63532267 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0013768.1 MGP_CASTEiJ_G0011931.1 mouse_genomes_project 3 101020811 101021371 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099759.1 MGP_CASTEiJ_G0036672.1 mouse_genomes_project 3 148429773 148429926 - Gm25627 snRNA snRNA MGP_CASTEiJ_T0013465.1 MGP_CASTEiJ_G0011628.1 mouse_genomes_project 3 1519857 1520074 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063939.1 MGP_CASTEiJ_G0027076.1 mouse_genomes_project 3 139683126 139739085 - MGP_CASTEiJ_P0063939 Dapp1 protein_coding protein_coding MGP_CASTEiJ_T0063940.1 MGP_CASTEiJ_G0027076.1 mouse_genomes_project 3 139683127 139739076 - MGP_CASTEiJ_P0063940 Dapp1 protein_coding protein_coding MGP_CASTEiJ_T0063941.1 MGP_CASTEiJ_G0027076.1 mouse_genomes_project 3 139684808 139710564 - Dapp1 protein_coding processed_transcript MGP_CASTEiJ_T0063942.1 MGP_CASTEiJ_G0027076.1 mouse_genomes_project 3 139685111 139709412 - Dapp1 protein_coding processed_transcript MGP_CASTEiJ_T0063943.1 MGP_CASTEiJ_G0027076.1 mouse_genomes_project 3 139685229 139739070 - Dapp1 protein_coding processed_transcript MGP_CASTEiJ_T0063944.1 MGP_CASTEiJ_G0027076.1 mouse_genomes_project 3 139704437 139709412 - Dapp1 protein_coding processed_transcript MGP_CASTEiJ_T0063945.1 MGP_CASTEiJ_G0027076.1 mouse_genomes_project 3 139738246 139739076 - Dapp1 protein_coding retained_intron MGP_CASTEiJ_T0001238.1 MGP_CASTEiJ_G0001169.1 mouse_genomes_project 3 116688384 116689416 + TEC TEC MGP_CASTEiJ_T0004122.1 MGP_CASTEiJ_G0003634.1 mouse_genomes_project 3 59741347 59743495 - Gm37035 antisense antisense MGP_CASTEiJ_T0007524.1 MGP_CASTEiJ_G0006169.1 mouse_genomes_project 3 135745884 135777659 + Gm43192 lincRNA lincRNA MGP_CASTEiJ_T0062042.1 MGP_CASTEiJ_G0026638.1 mouse_genomes_project 3 90634487 90636020 + MGP_CASTEiJ_P0062042 S100a6 protein_coding protein_coding MGP_CASTEiJ_T0062043.1 MGP_CASTEiJ_G0026638.1 mouse_genomes_project 3 90634759 90635613 + S100a6 protein_coding retained_intron MGP_CASTEiJ_T0062044.1 MGP_CASTEiJ_G0026638.1 mouse_genomes_project 3 90634910 90636020 + MGP_CASTEiJ_P0062044 S100a6 protein_coding protein_coding MGP_CASTEiJ_T0062045.1 MGP_CASTEiJ_G0026638.1 mouse_genomes_project 3 90635365 90646778 + MGP_CASTEiJ_P0062045 S100a6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062664.1 MGP_CASTEiJ_G0026818.1 mouse_genomes_project 3 98561379 98581525 - MGP_CASTEiJ_P0062664 Hao2 protein_coding protein_coding MGP_CASTEiJ_T0101007.1 MGP_CASTEiJ_G0037920.1 mouse_genomes_project 3 156627652 156627777 + Gm24395 snoRNA snoRNA MGP_CASTEiJ_T0062078.1 MGP_CASTEiJ_G0026664.1 mouse_genomes_project 3 91835571 91840213 - MGP_CASTEiJ_P0062078 Ivl protein_coding protein_coding MGP_CASTEiJ_T0007276.1 MGP_CASTEiJ_G0005979.1 mouse_genomes_project 3 12410487 12440447 + A930001A20Rik lincRNA lincRNA MGP_CASTEiJ_T0063749.1 MGP_CASTEiJ_G0027042.1 mouse_genomes_project 3 132798102 132839222 - MGP_CASTEiJ_P0063749 Hadh protein_coding protein_coding MGP_CASTEiJ_T0063750.1 MGP_CASTEiJ_G0027042.1 mouse_genomes_project 3 132809739 132839145 - Hadh protein_coding retained_intron MGP_CASTEiJ_T0013665.1 MGP_CASTEiJ_G0011828.1 mouse_genomes_project 3 68152910 68153173 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013574.1 MGP_CASTEiJ_G0011737.1 mouse_genomes_project 3 36921572 36921945 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013767.1 MGP_CASTEiJ_G0011930.1 mouse_genomes_project 3 100989402 100989838 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017274.1 MGP_CASTEiJ_G0014844.1 mouse_genomes_project 3 150524493 150535561 + Gm43574 processed_transcript processed_transcript MGP_CASTEiJ_T0063026.1 MGP_CASTEiJ_G0026899.1 mouse_genomes_project 3 107491642 107506477 + MGP_CASTEiJ_P0063026 Kcna10 protein_coding protein_coding MGP_CASTEiJ_T0063027.1 MGP_CASTEiJ_G0026899.1 mouse_genomes_project 3 107491730 107497247 + Kcna10 protein_coding processed_transcript MGP_CASTEiJ_T0013470.1 MGP_CASTEiJ_G0011633.1 mouse_genomes_project 3 3651087 3652069 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007362.1 MGP_CASTEiJ_G0006045.1 mouse_genomes_project 3 56148215 56162332 - Gm26671 lincRNA lincRNA MGP_CASTEiJ_T0007363.1 MGP_CASTEiJ_G0006045.1 mouse_genomes_project 3 56157527 56162393 - Gm26671 lincRNA lincRNA MGP_CASTEiJ_T0007364.1 MGP_CASTEiJ_G0006045.1 mouse_genomes_project 3 56157880 56162363 - Gm26671 lincRNA lincRNA MGP_CASTEiJ_T0007365.1 MGP_CASTEiJ_G0006045.1 mouse_genomes_project 3 56159444 56162399 - Gm26671 lincRNA lincRNA MGP_CASTEiJ_T0011206.1 MGP_CASTEiJ_G0009394.1 mouse_genomes_project 3 32231362 32231634 + Mir1897 misc_RNA misc_RNA MGP_CASTEiJ_T0004111.1 MGP_CASTEiJ_G0003626.1 mouse_genomes_project 3 51396734 51399907 - Gm42901 antisense antisense MGP_CASTEiJ_T0101004.1 MGP_CASTEiJ_G0037917.1 mouse_genomes_project 3 146753292 146753420 - Gm24406 snoRNA snoRNA MGP_CASTEiJ_T0062504.1 MGP_CASTEiJ_G0026774.1 mouse_genomes_project 3 95903418 95904033 - MGP_CASTEiJ_P0062504 Hist1h3a protein_coding protein_coding MGP_CASTEiJ_T0007439.1 MGP_CASTEiJ_G0006099.1 mouse_genomes_project 3 95914468 95932814 - lincRNA lincRNA MGP_CASTEiJ_T0098936.1 MGP_CASTEiJ_G0035860.1 mouse_genomes_project 3 156018435 156020580 - 1700012D16Rik sense_intronic sense_intronic MGP_CASTEiJ_T0064451.1 MGP_CASTEiJ_G0027167.1 mouse_genomes_project 3 160890081 160945753 + MGP_CASTEiJ_P0064451 Ankrd13c protein_coding unknown_likely_coding MGP_CASTEiJ_T0064452.1 MGP_CASTEiJ_G0027167.1 mouse_genomes_project 3 160892047 160947305 + MGP_CASTEiJ_P0064452 Ankrd13c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064453.1 MGP_CASTEiJ_G0027167.1 mouse_genomes_project 3 160892222 160945793 + MGP_CASTEiJ_P0064453 Ankrd13c protein_coding protein_coding MGP_CASTEiJ_T0064454.1 MGP_CASTEiJ_G0027167.1 mouse_genomes_project 3 160892222 160947912 + MGP_CASTEiJ_P0064454 Ankrd13c protein_coding protein_coding MGP_CASTEiJ_T0064455.1 MGP_CASTEiJ_G0027167.1 mouse_genomes_project 3 160927287 160934446 + Ankrd13c protein_coding retained_intron MGP_CASTEiJ_T0064456.1 MGP_CASTEiJ_G0027167.1 mouse_genomes_project 3 160930509 160943884 + Ankrd13c protein_coding retained_intron MGP_CASTEiJ_T0064457.1 MGP_CASTEiJ_G0027167.1 mouse_genomes_project 3 160933339 160941030 + Ankrd13c protein_coding processed_transcript MGP_CASTEiJ_T0064458.1 MGP_CASTEiJ_G0027167.1 mouse_genomes_project 3 160933914 160941000 + Ankrd13c protein_coding retained_intron MGP_CASTEiJ_T0064459.1 MGP_CASTEiJ_G0027167.1 mouse_genomes_project 3 160938333 160942986 + Ankrd13c protein_coding retained_intron MGP_CASTEiJ_T0064460.1 MGP_CASTEiJ_G0027167.1 mouse_genomes_project 3 160939293 160941046 + Ankrd13c protein_coding retained_intron MGP_CASTEiJ_T0063949.1 MGP_CASTEiJ_G0027079.1 mouse_genomes_project 3 139840471 139914863 - MGP_CASTEiJ_P0063949 Mttp protein_coding unknown_likely_coding MGP_CASTEiJ_T0063950.1 MGP_CASTEiJ_G0027079.1 mouse_genomes_project 3 139858584 139900746 - MGP_CASTEiJ_P0063950 Mttp protein_coding protein_coding MGP_CASTEiJ_T0063951.1 MGP_CASTEiJ_G0027079.1 mouse_genomes_project 3 139858599 139914361 - MGP_CASTEiJ_P0063951 Mttp protein_coding unknown_likely_coding MGP_CASTEiJ_T0063952.1 MGP_CASTEiJ_G0027079.1 mouse_genomes_project 3 139859777 139914403 - MGP_CASTEiJ_P0063952 Mttp protein_coding protein_coding MGP_CASTEiJ_T0063953.1 MGP_CASTEiJ_G0027079.1 mouse_genomes_project 3 139913277 139915995 - Mttp protein_coding retained_intron MGP_CASTEiJ_T0007506.1 MGP_CASTEiJ_G0006153.1 mouse_genomes_project 3 129912116 130266767 + lincRNA lincRNA MGP_CASTEiJ_T0060902.1 MGP_CASTEiJ_G0026411.1 mouse_genomes_project 3 57734360 57751166 - MGP_CASTEiJ_P0060902 P2ry14 protein_coding protein_coding MGP_CASTEiJ_T0060903.1 MGP_CASTEiJ_G0026411.1 mouse_genomes_project 3 57735130 57773731 - MGP_CASTEiJ_P0060903 P2ry14 protein_coding protein_coding MGP_CASTEiJ_T0060904.1 MGP_CASTEiJ_G0026411.1 mouse_genomes_project 3 57735130 57751028 - MGP_CASTEiJ_P0060904 P2ry14 protein_coding protein_coding MGP_CASTEiJ_T0060905.1 MGP_CASTEiJ_G0026411.1 mouse_genomes_project 3 57735131 57751026 - MGP_CASTEiJ_P0060905 P2ry14 protein_coding protein_coding MGP_CASTEiJ_T0060906.1 MGP_CASTEiJ_G0026411.1 mouse_genomes_project 3 57735437 57751731 - MGP_CASTEiJ_P0060906 P2ry14 protein_coding protein_coding MGP_CASTEiJ_T0060907.1 MGP_CASTEiJ_G0026411.1 mouse_genomes_project 3 57736212 57751617 - MGP_CASTEiJ_P0060907 P2ry14 protein_coding protein_coding MGP_CASTEiJ_T0060908.1 MGP_CASTEiJ_G0026411.1 mouse_genomes_project 3 57736516 57751522 - MGP_CASTEiJ_P0060908 P2ry14 protein_coding protein_coding MGP_CASTEiJ_T0060909.1 MGP_CASTEiJ_G0026411.1 mouse_genomes_project 3 57736531 57752866 - MGP_CASTEiJ_P0060909 P2ry14 protein_coding protein_coding MGP_CASTEiJ_T0060910.1 MGP_CASTEiJ_G0026411.1 mouse_genomes_project 3 57766076 57773857 - P2ry14 protein_coding retained_intron MGP_CASTEiJ_T0063080.1 MGP_CASTEiJ_G0026916.1 mouse_genomes_project 3 108282921 108288397 - MGP_CASTEiJ_P0063080 Gstm7 protein_coding protein_coding MGP_CASTEiJ_T0063081.1 MGP_CASTEiJ_G0026916.1 mouse_genomes_project 3 108283294 108288247 - MGP_CASTEiJ_P0063081 Gstm7 protein_coding protein_coding MGP_CASTEiJ_T0063082.1 MGP_CASTEiJ_G0026916.1 mouse_genomes_project 3 108283397 108288194 - MGP_CASTEiJ_P0063082 Gstm7 protein_coding protein_coding MGP_CASTEiJ_T0063083.1 MGP_CASTEiJ_G0026916.1 mouse_genomes_project 3 108285650 108288159 - MGP_CASTEiJ_P0063083 Gstm7 protein_coding protein_coding MGP_CASTEiJ_T0063084.1 MGP_CASTEiJ_G0026916.1 mouse_genomes_project 3 108285719 108288190 - MGP_CASTEiJ_P0063084 Gstm7 protein_coding protein_coding MGP_CASTEiJ_T0007384.1 MGP_CASTEiJ_G0006061.1 mouse_genomes_project 3 72334864 72457721 - lincRNA lincRNA MGP_CASTEiJ_T0060792.1 MGP_CASTEiJ_G0026386.1 mouse_genomes_project 3 53362656 53385460 - MGP_CASTEiJ_P0060792 Sertm1 protein_coding protein_coding MGP_CASTEiJ_T0060793.1 MGP_CASTEiJ_G0026386.1 mouse_genomes_project 3 53362659 53386316 - MGP_CASTEiJ_P0060793 Sertm1 protein_coding protein_coding MGP_CASTEiJ_T0101770.1 MGP_CASTEiJ_G0038555.1 mouse_genomes_project 3 38587575 38588838 - transcribed_unprocessed_pseudogene retained_intron MGP_CASTEiJ_T0062999.1 MGP_CASTEiJ_G0026893.1 mouse_genomes_project 3 106847274 106873463 + MGP_CASTEiJ_P0062999 Dram2 protein_coding protein_coding MGP_CASTEiJ_T0063000.1 MGP_CASTEiJ_G0026893.1 mouse_genomes_project 3 106847303 106863932 + Dram2 protein_coding retained_intron MGP_CASTEiJ_T0063001.1 MGP_CASTEiJ_G0026893.1 mouse_genomes_project 3 106847307 106854754 + MGP_CASTEiJ_P0063001 Dram2 protein_coding protein_coding MGP_CASTEiJ_T0063002.1 MGP_CASTEiJ_G0026893.1 mouse_genomes_project 3 106847340 106872415 + MGP_CASTEiJ_P0063002 Dram2 protein_coding protein_coding MGP_CASTEiJ_T0063003.1 MGP_CASTEiJ_G0026893.1 mouse_genomes_project 3 106847346 106863773 + Dram2 protein_coding retained_intron MGP_CASTEiJ_T0063004.1 MGP_CASTEiJ_G0026893.1 mouse_genomes_project 3 106847348 106872415 + MGP_CASTEiJ_P0063004 Dram2 protein_coding protein_coding MGP_CASTEiJ_T0063005.1 MGP_CASTEiJ_G0026893.1 mouse_genomes_project 3 106847353 106854722 + MGP_CASTEiJ_P0063005 Dram2 protein_coding protein_coding MGP_CASTEiJ_T0063006.1 MGP_CASTEiJ_G0026893.1 mouse_genomes_project 3 106847353 106868328 + MGP_CASTEiJ_P0063006 Dram2 protein_coding protein_coding MGP_CASTEiJ_T0063007.1 MGP_CASTEiJ_G0026893.1 mouse_genomes_project 3 106847357 106868265 + MGP_CASTEiJ_P0063007 Dram2 protein_coding protein_coding MGP_CASTEiJ_T0098592.1 MGP_CASTEiJ_G0035523.1 mouse_genomes_project 3 88770609 88770728 + n-R5s197 rRNA rRNA MGP_CASTEiJ_T0007474.1 MGP_CASTEiJ_G0006129.1 mouse_genomes_project 3 108744018 108745997 + lincRNA lincRNA MGP_CASTEiJ_T0013735.1 MGP_CASTEiJ_G0011898.1 mouse_genomes_project 3 92628180 92628635 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010243.1 MGP_CASTEiJ_G0008431.1 mouse_genomes_project 3 90024077 90024157 + Mir190b miRNA miRNA MGP_CASTEiJ_T0013881.1 MGP_CASTEiJ_G0012044.1 mouse_genomes_project 3 138680708 138681024 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063733.1 MGP_CASTEiJ_G0027040.1 mouse_genomes_project 3 132237233 132240735 - MGP_CASTEiJ_P0063733 Rpl34 protein_coding protein_coding MGP_CASTEiJ_T0063734.1 MGP_CASTEiJ_G0027040.1 mouse_genomes_project 3 132237236 132237805 - Rpl34 protein_coding retained_intron MGP_CASTEiJ_T0063735.1 MGP_CASTEiJ_G0027040.1 mouse_genomes_project 3 132237241 132240796 - MGP_CASTEiJ_P0063735 Rpl34 protein_coding protein_coding MGP_CASTEiJ_T0063736.1 MGP_CASTEiJ_G0027040.1 mouse_genomes_project 3 132237266 132240740 - Rpl34 protein_coding retained_intron MGP_CASTEiJ_T0063737.1 MGP_CASTEiJ_G0027040.1 mouse_genomes_project 3 132237278 132240719 - MGP_CASTEiJ_P0063737 Rpl34 protein_coding protein_coding MGP_CASTEiJ_T0063738.1 MGP_CASTEiJ_G0027040.1 mouse_genomes_project 3 132238723 132240732 - MGP_CASTEiJ_P0063738 Rpl34 protein_coding protein_coding MGP_CASTEiJ_T0063739.1 MGP_CASTEiJ_G0027040.1 mouse_genomes_project 3 132238958 132240745 - Rpl34 protein_coding retained_intron MGP_CASTEiJ_T0063740.1 MGP_CASTEiJ_G0027040.1 mouse_genomes_project 3 132239224 132240744 - MGP_CASTEiJ_P0063740 Rpl34 protein_coding protein_coding MGP_CASTEiJ_T0062058.1 MGP_CASTEiJ_G0026647.1 mouse_genomes_project 3 91330499 91338298 - MGP_CASTEiJ_P0062058 Lelp1 protein_coding protein_coding MGP_CASTEiJ_T0017243.1 MGP_CASTEiJ_G0014835.1 mouse_genomes_project 3 109571843 109574194 - Gm43223 processed_transcript lincRNA MGP_CASTEiJ_T0017244.1 MGP_CASTEiJ_G0014835.1 mouse_genomes_project 3 109571852 109573969 - Gm43223 processed_transcript processed_transcript MGP_CASTEiJ_T0060041.1 MGP_CASTEiJ_G0026246.1 mouse_genomes_project 3 12027980 12032963 - MGP_CASTEiJ_P0060041 1810022K09Rik protein_coding protein_coding MGP_CASTEiJ_T0060042.1 MGP_CASTEiJ_G0026246.1 mouse_genomes_project 3 12027985 12032899 - MGP_CASTEiJ_P0060042 1810022K09Rik protein_coding protein_coding MGP_CASTEiJ_T0060043.1 MGP_CASTEiJ_G0026246.1 mouse_genomes_project 3 12027985 12032939 - MGP_CASTEiJ_P0060043 1810022K09Rik protein_coding protein_coding MGP_CASTEiJ_T0060044.1 MGP_CASTEiJ_G0026246.1 mouse_genomes_project 3 12027989 12032932 - MGP_CASTEiJ_P0060044 1810022K09Rik protein_coding protein_coding MGP_CASTEiJ_T0060045.1 MGP_CASTEiJ_G0026246.1 mouse_genomes_project 3 12030861 12032921 - 1810022K09Rik protein_coding retained_intron MGP_CASTEiJ_T0098892.1 MGP_CASTEiJ_G0035816.1 mouse_genomes_project 3 100835265 100837731 - Gm43465 sense_intronic sense_intronic MGP_CASTEiJ_T0062506.1 MGP_CASTEiJ_G0026776.1 mouse_genomes_project 3 95978430 95999466 - MGP_CASTEiJ_P0062506 BC107364 protein_coding protein_coding MGP_CASTEiJ_T0062507.1 MGP_CASTEiJ_G0026776.1 mouse_genomes_project 3 95978430 95999466 - MGP_CASTEiJ_P0062507 BC107364 protein_coding protein_coding MGP_CASTEiJ_T0060848.1 MGP_CASTEiJ_G0026396.1 mouse_genomes_project 3 55947416 55965128 + MGP_CASTEiJ_P0060848 Tm4sf4 protein_coding protein_coding MGP_CASTEiJ_T0007491.1 MGP_CASTEiJ_G0006142.1 mouse_genomes_project 3 122527225 122535772 - A730020M07Rik lincRNA lincRNA MGP_CASTEiJ_T0007492.1 MGP_CASTEiJ_G0006142.1 mouse_genomes_project 3 122529426 122535775 - A730020M07Rik lincRNA lincRNA MGP_CASTEiJ_T0007493.1 MGP_CASTEiJ_G0006142.1 mouse_genomes_project 3 122529428 122535657 - A730020M07Rik lincRNA lincRNA MGP_CASTEiJ_T0013740.1 MGP_CASTEiJ_G0011903.1 mouse_genomes_project 3 94072788 94073161 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017252.1 MGP_CASTEiJ_G0014837.1 mouse_genomes_project 3 119155512 119159157 + Gm26871 processed_transcript lincRNA MGP_CASTEiJ_T0017253.1 MGP_CASTEiJ_G0014837.1 mouse_genomes_project 3 119158994 119248634 + Gm26871 processed_transcript lincRNA MGP_CASTEiJ_T0017254.1 MGP_CASTEiJ_G0014837.1 mouse_genomes_project 3 119159119 119250711 + Gm26871 processed_transcript lincRNA MGP_CASTEiJ_T0017255.1 MGP_CASTEiJ_G0014837.1 mouse_genomes_project 3 119159130 119202388 + Gm26871 processed_transcript lincRNA MGP_CASTEiJ_T0017256.1 MGP_CASTEiJ_G0014837.1 mouse_genomes_project 3 119159163 119263738 + Gm26871 processed_transcript lincRNA MGP_CASTEiJ_T0017257.1 MGP_CASTEiJ_G0014837.1 mouse_genomes_project 3 119183497 119186507 + Gm26871 processed_transcript retained_intron MGP_CASTEiJ_T0004274.1 MGP_CASTEiJ_G0003736.1 mouse_genomes_project 3 154765992 154766935 + Gm43455 antisense antisense MGP_CASTEiJ_T0004275.1 MGP_CASTEiJ_G0003736.1 mouse_genomes_project 3 154766213 154766935 + Gm43455 antisense antisense MGP_CASTEiJ_T0013503.1 MGP_CASTEiJ_G0011666.1 mouse_genomes_project 3 11930692 11931701 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004133.1 MGP_CASTEiJ_G0003643.1 mouse_genomes_project 3 79137048 79173540 - Gm36569 antisense antisense MGP_CASTEiJ_T0013589.1 MGP_CASTEiJ_G0011752.1 mouse_genomes_project 3 42590292 42590674 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001156.1 MGP_CASTEiJ_G0001087.1 mouse_genomes_project 3 50369203 50371011 - TEC TEC MGP_CASTEiJ_T0063466.1 MGP_CASTEiJ_G0026994.1 mouse_genomes_project 3 123183580 123204198 + MGP_CASTEiJ_P0063466 Gclm protein_coding protein_coding MGP_CASTEiJ_T0063467.1 MGP_CASTEiJ_G0026994.1 mouse_genomes_project 3 123183582 123200425 + MGP_CASTEiJ_P0063467 Gclm protein_coding protein_coding MGP_CASTEiJ_T0063468.1 MGP_CASTEiJ_G0026994.1 mouse_genomes_project 3 123183675 123203032 + MGP_CASTEiJ_P0063468 Gclm protein_coding protein_coding MGP_CASTEiJ_T0063469.1 MGP_CASTEiJ_G0026994.1 mouse_genomes_project 3 123199589 123204056 + Gclm protein_coding retained_intron MGP_CASTEiJ_T0061593.1 MGP_CASTEiJ_G0026563.1 mouse_genomes_project 3 88344127 88361956 + MGP_CASTEiJ_P0061593 Ubqln4 protein_coding protein_coding MGP_CASTEiJ_T0061594.1 MGP_CASTEiJ_G0026563.1 mouse_genomes_project 3 88344133 88355765 + Ubqln4 protein_coding retained_intron MGP_CASTEiJ_T0061595.1 MGP_CASTEiJ_G0026563.1 mouse_genomes_project 3 88344165 88348031 + MGP_CASTEiJ_P0061595 Ubqln4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061596.1 MGP_CASTEiJ_G0026563.1 mouse_genomes_project 3 88347895 88356720 + Ubqln4 protein_coding processed_transcript MGP_CASTEiJ_T0061597.1 MGP_CASTEiJ_G0026563.1 mouse_genomes_project 3 88356112 88357482 + Ubqln4 protein_coding retained_intron MGP_CASTEiJ_T0061448.1 MGP_CASTEiJ_G0026536.1 mouse_genomes_project 3 87633014 87636943 + MGP_CASTEiJ_P0061448 Mrpl24 protein_coding protein_coding MGP_CASTEiJ_T0061449.1 MGP_CASTEiJ_G0026536.1 mouse_genomes_project 3 87633014 87636953 + MGP_CASTEiJ_P0061449 Mrpl24 protein_coding protein_coding MGP_CASTEiJ_T0061450.1 MGP_CASTEiJ_G0026536.1 mouse_genomes_project 3 87633044 87635356 + MGP_CASTEiJ_P0061450 Mrpl24 protein_coding protein_coding MGP_CASTEiJ_T0061451.1 MGP_CASTEiJ_G0026536.1 mouse_genomes_project 3 87633065 87634028 + Mrpl24 protein_coding retained_intron MGP_CASTEiJ_T0061452.1 MGP_CASTEiJ_G0026536.1 mouse_genomes_project 3 87633071 87636953 + MGP_CASTEiJ_P0061452 Mrpl24 protein_coding protein_coding MGP_CASTEiJ_T0061453.1 MGP_CASTEiJ_G0026536.1 mouse_genomes_project 3 87634939 87636953 + MGP_CASTEiJ_P0061453 Mrpl24 protein_coding protein_coding MGP_CASTEiJ_T0007458.1 MGP_CASTEiJ_G0006116.1 mouse_genomes_project 3 102439250 102441470 + Gm42678 lincRNA lincRNA MGP_CASTEiJ_T0061773.1 MGP_CASTEiJ_G0026587.1 mouse_genomes_project 3 89133829 89135060 + Krtcap2 protein_coding retained_intron MGP_CASTEiJ_T0061774.1 MGP_CASTEiJ_G0026587.1 mouse_genomes_project 3 89133829 89137945 + MGP_CASTEiJ_P0061774 Krtcap2 protein_coding protein_coding MGP_CASTEiJ_T0061775.1 MGP_CASTEiJ_G0026587.1 mouse_genomes_project 3 89134297 89137748 + MGP_CASTEiJ_P0061775 Krtcap2 protein_coding protein_coding MGP_CASTEiJ_T0061776.1 MGP_CASTEiJ_G0026587.1 mouse_genomes_project 3 89136901 89137761 + Krtcap2 protein_coding retained_intron MGP_CASTEiJ_T0013569.1 MGP_CASTEiJ_G0011732.1 mouse_genomes_project 3 35279398 35279719 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004278.1 MGP_CASTEiJ_G0003739.1 mouse_genomes_project 3 155647339 155647957 + Gm16231 antisense antisense MGP_CASTEiJ_T0060967.1 MGP_CASTEiJ_G0026427.1 mouse_genomes_project 3 61189565 61230787 - MGP_CASTEiJ_P0060967 Dhx36 protein_coding protein_coding MGP_CASTEiJ_T0060968.1 MGP_CASTEiJ_G0026427.1 mouse_genomes_project 3 61191650 61230864 - MGP_CASTEiJ_P0060968 Dhx36 protein_coding unknown_likely_coding MGP_CASTEiJ_T0060969.1 MGP_CASTEiJ_G0026427.1 mouse_genomes_project 3 61192197 61194140 - Dhx36 protein_coding retained_intron MGP_CASTEiJ_T0060970.1 MGP_CASTEiJ_G0026427.1 mouse_genomes_project 3 61205588 61210025 - Dhx36 protein_coding retained_intron MGP_CASTEiJ_T0060971.1 MGP_CASTEiJ_G0026427.1 mouse_genomes_project 3 61219333 61223534 - Dhx36 protein_coding retained_intron MGP_CASTEiJ_T0007312.1 MGP_CASTEiJ_G0006007.1 mouse_genomes_project 3 32294039 32312403 - Gm3143 lincRNA lincRNA MGP_CASTEiJ_T0007313.1 MGP_CASTEiJ_G0006007.1 mouse_genomes_project 3 32305350 32312405 - Gm3143 lincRNA lincRNA MGP_CASTEiJ_T0007342.1 MGP_CASTEiJ_G0006029.1 mouse_genomes_project 3 39298747 39305830 - Gm43733 lincRNA lincRNA MGP_CASTEiJ_T0007343.1 MGP_CASTEiJ_G0006029.1 mouse_genomes_project 3 39299692 39305864 - Gm43733 lincRNA lincRNA MGP_CASTEiJ_T0007344.1 MGP_CASTEiJ_G0006029.1 mouse_genomes_project 3 39299774 39300704 - Gm43733 lincRNA lincRNA MGP_CASTEiJ_T0102278.1 MGP_CASTEiJ_G0039003.1 mouse_genomes_project 3 80349652 80350120 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0061333.1 MGP_CASTEiJ_G0026510.1 mouse_genomes_project 3 84213904 84260027 + MGP_CASTEiJ_P0061333 Tmem154 protein_coding protein_coding MGP_CASTEiJ_T0061334.1 MGP_CASTEiJ_G0026510.1 mouse_genomes_project 3 84213922 84235775 + Tmem154 protein_coding retained_intron MGP_CASTEiJ_T0061335.1 MGP_CASTEiJ_G0026510.1 mouse_genomes_project 3 84214082 84235665 + Tmem154 protein_coding processed_transcript MGP_CASTEiJ_T0061336.1 MGP_CASTEiJ_G0026510.1 mouse_genomes_project 3 84243527 84245840 + Tmem154 protein_coding retained_intron MGP_CASTEiJ_T0013817.1 MGP_CASTEiJ_G0011980.1 mouse_genomes_project 3 117421992 117422377 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062179.1 MGP_CASTEiJ_G0026709.1 mouse_genomes_project 3 94040798 94161682 - MGP_CASTEiJ_P0062179 Tuft1 protein_coding protein_coding MGP_CASTEiJ_T0062180.1 MGP_CASTEiJ_G0026709.1 mouse_genomes_project 3 94040800 94161683 - MGP_CASTEiJ_P0062180 Tuft1 protein_coding protein_coding MGP_CASTEiJ_T0062181.1 MGP_CASTEiJ_G0026709.1 mouse_genomes_project 3 94041037 94161611 - MGP_CASTEiJ_P0062181 Tuft1 protein_coding protein_coding MGP_CASTEiJ_T0062182.1 MGP_CASTEiJ_G0026709.1 mouse_genomes_project 3 94042209 94043368 - Tuft1 protein_coding retained_intron MGP_CASTEiJ_T0062183.1 MGP_CASTEiJ_G0026709.1 mouse_genomes_project 3 94050889 94161611 - MGP_CASTEiJ_P0062183 Tuft1 protein_coding protein_coding MGP_CASTEiJ_T0062691.1 MGP_CASTEiJ_G0026825.1 mouse_genomes_project 3 100287191 100413746 - MGP_CASTEiJ_P0062691 Man1a2 protein_coding protein_coding MGP_CASTEiJ_T0062692.1 MGP_CASTEiJ_G0026825.1 mouse_genomes_project 3 100311210 100378595 - Man1a2 protein_coding processed_transcript MGP_CASTEiJ_T0062693.1 MGP_CASTEiJ_G0026825.1 mouse_genomes_project 3 100345447 100412856 - MGP_CASTEiJ_P0062693 Man1a2 protein_coding protein_coding MGP_CASTEiJ_T0062694.1 MGP_CASTEiJ_G0026825.1 mouse_genomes_project 3 100369764 100413368 - MGP_CASTEiJ_P0062694 Man1a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062695.1 MGP_CASTEiJ_G0026825.1 mouse_genomes_project 3 100383436 100413551 - Man1a2 protein_coding processed_transcript MGP_CASTEiJ_T0062696.1 MGP_CASTEiJ_G0026825.1 mouse_genomes_project 3 100412836 100413702 - Man1a2 protein_coding processed_transcript MGP_CASTEiJ_T0060972.1 MGP_CASTEiJ_G0026428.1 mouse_genomes_project 3 61253009 61330004 - MGP_CASTEiJ_P0060972 Gpr149 protein_coding protein_coding MGP_CASTEiJ_T0060973.1 MGP_CASTEiJ_G0026428.1 mouse_genomes_project 3 61316546 61327633 - Gpr149 protein_coding retained_intron MGP_CASTEiJ_T0017223.1 MGP_CASTEiJ_G0014825.1 mouse_genomes_project 3 93768069 93772448 - Gm36070 processed_transcript lincRNA MGP_CASTEiJ_T0017224.1 MGP_CASTEiJ_G0014825.1 mouse_genomes_project 3 93768888 93770818 - Gm36070 processed_transcript retained_intron MGP_CASTEiJ_T0001306.1 MGP_CASTEiJ_G0001236.1 mouse_genomes_project 3 134616827 134618548 - TEC TEC MGP_CASTEiJ_T0001161.1 MGP_CASTEiJ_G0001092.1 mouse_genomes_project 3 51474027 51474483 + TEC TEC MGP_CASTEiJ_T0062490.1 MGP_CASTEiJ_G0026762.1 mouse_genomes_project 3 95742620 95744493 - MGP_CASTEiJ_P0062490 Bola1 protein_coding protein_coding MGP_CASTEiJ_T0062491.1 MGP_CASTEiJ_G0026762.1 mouse_genomes_project 3 95742622 95743621 - MGP_CASTEiJ_P0062491 Bola1 protein_coding protein_coding MGP_CASTEiJ_T0061247.1 MGP_CASTEiJ_G0026488.1 mouse_genomes_project 3 81398870 81416563 + Asic5 protein_coding processed_transcript MGP_CASTEiJ_T0061248.1 MGP_CASTEiJ_G0026488.1 mouse_genomes_project 3 81412445 81441358 + MGP_CASTEiJ_P0061248 Asic5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0061249.1 MGP_CASTEiJ_G0026488.1 mouse_genomes_project 3 81416324 81441493 + MGP_CASTEiJ_P0061249 Asic5 protein_coding protein_coding MGP_CASTEiJ_T0007411.1 MGP_CASTEiJ_G0006084.1 mouse_genomes_project 3 87935936 87943710 - AI849053 lincRNA lincRNA MGP_CASTEiJ_T0013720.1 MGP_CASTEiJ_G0011883.1 mouse_genomes_project 3 88199788 88201186 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017201.1 MGP_CASTEiJ_G0014815.1 mouse_genomes_project 3 35030889 35124073 + Gm43439 processed_transcript processed_transcript MGP_CASTEiJ_T0001171.1 MGP_CASTEiJ_G0001102.1 mouse_genomes_project 3 54678215 54681867 - TEC TEC MGP_CASTEiJ_T0061386.1 MGP_CASTEiJ_G0026523.1 mouse_genomes_project 3 86929982 86944605 - MGP_CASTEiJ_P0061386 Fcrls protein_coding protein_coding MGP_CASTEiJ_T0061387.1 MGP_CASTEiJ_G0026523.1 mouse_genomes_project 3 86939968 86944744 - MGP_CASTEiJ_P0061387 Fcrls protein_coding protein_coding MGP_CASTEiJ_T0098896.1 MGP_CASTEiJ_G0035820.1 mouse_genomes_project 3 101374037 101375476 - Gm42941 sense_intronic sense_intronic MGP_CASTEiJ_T0098929.1 MGP_CASTEiJ_G0035853.1 mouse_genomes_project 3 105808569 105810264 - Gm43331 sense_intronic sense_intronic MGP_CASTEiJ_T0100943.1 MGP_CASTEiJ_G0037856.1 mouse_genomes_project 3 19618887 19619016 - Gm26354 snoRNA snoRNA MGP_CASTEiJ_T0007571.1 MGP_CASTEiJ_G0006211.1 mouse_genomes_project 3 149981926 149999743 - Gm36888 lincRNA lincRNA MGP_CASTEiJ_T0062228.1 MGP_CASTEiJ_G0026717.1 mouse_genomes_project 3 94413738 94446605 + MGP_CASTEiJ_P0062228 Pi4kb protein_coding protein_coding MGP_CASTEiJ_T0062229.1 MGP_CASTEiJ_G0026717.1 mouse_genomes_project 3 94413838 94445906 + MGP_CASTEiJ_P0062229 Pi4kb protein_coding protein_coding MGP_CASTEiJ_T0062230.1 MGP_CASTEiJ_G0026717.1 mouse_genomes_project 3 94413883 94445902 + MGP_CASTEiJ_P0062230 Pi4kb protein_coding protein_coding MGP_CASTEiJ_T0062231.1 MGP_CASTEiJ_G0026717.1 mouse_genomes_project 3 94415127 94446543 + MGP_CASTEiJ_P0062231 Pi4kb protein_coding protein_coding MGP_CASTEiJ_T0062232.1 MGP_CASTEiJ_G0026717.1 mouse_genomes_project 3 94415154 94434781 + MGP_CASTEiJ_P0062232 Pi4kb protein_coding protein_coding MGP_CASTEiJ_T0062233.1 MGP_CASTEiJ_G0026717.1 mouse_genomes_project 3 94437793 94445935 + MGP_CASTEiJ_P0062233 Pi4kb protein_coding protein_coding MGP_CASTEiJ_T0062234.1 MGP_CASTEiJ_G0026717.1 mouse_genomes_project 3 94444083 94446003 + Pi4kb protein_coding processed_transcript MGP_CASTEiJ_T0098720.1 MGP_CASTEiJ_G0035651.1 mouse_genomes_project 3 13387865 13388194 - Gm25863 ribozyme ribozyme MGP_CASTEiJ_T0060928.1 MGP_CASTEiJ_G0026419.1 mouse_genomes_project 3 58660347 58679121 + MGP_CASTEiJ_P0060928 Aadacl2 protein_coding protein_coding MGP_CASTEiJ_T0013858.1 MGP_CASTEiJ_G0012021.1 mouse_genomes_project 3 132366259 132366771 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063718.1 MGP_CASTEiJ_G0027037.1 mouse_genomes_project 3 131624417 131688380 + Col25a1 protein_coding processed_transcript MGP_CASTEiJ_T0063719.1 MGP_CASTEiJ_G0027037.1 mouse_genomes_project 3 131686360 132064872 + Col25a1 protein_coding retained_intron MGP_CASTEiJ_T0063720.1 MGP_CASTEiJ_G0027037.1 mouse_genomes_project 3 131686360 132122621 + MGP_CASTEiJ_P0063720 Col25a1 protein_coding protein_coding MGP_CASTEiJ_T0063721.1 MGP_CASTEiJ_G0027037.1 mouse_genomes_project 3 131686360 132117880 + MGP_CASTEiJ_P0063721 Col25a1 protein_coding protein_coding MGP_CASTEiJ_T0063722.1 MGP_CASTEiJ_G0027037.1 mouse_genomes_project 3 131686360 132119068 + MGP_CASTEiJ_P0063722 Col25a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063723.1 MGP_CASTEiJ_G0027037.1 mouse_genomes_project 3 131997691 132000440 + Col25a1 protein_coding retained_intron MGP_CASTEiJ_T0061835.1 MGP_CASTEiJ_G0026601.1 mouse_genomes_project 3 89337116 89339644 + Pygo2 protein_coding processed_transcript MGP_CASTEiJ_T0061836.1 MGP_CASTEiJ_G0026601.1 mouse_genomes_project 3 89337163 89342036 + MGP_CASTEiJ_P0061836 Pygo2 protein_coding protein_coding MGP_CASTEiJ_T0061837.1 MGP_CASTEiJ_G0026601.1 mouse_genomes_project 3 89337326 89338072 + Pygo2 protein_coding processed_transcript MGP_CASTEiJ_T0061838.1 MGP_CASTEiJ_G0026601.1 mouse_genomes_project 3 89337642 89339583 + Pygo2 protein_coding processed_transcript MGP_CASTEiJ_T0061839.1 MGP_CASTEiJ_G0026601.1 mouse_genomes_project 3 89337739 89342036 + MGP_CASTEiJ_P0061839 Pygo2 protein_coding protein_coding MGP_CASTEiJ_T0061840.1 MGP_CASTEiJ_G0026601.1 mouse_genomes_project 3 89337934 89339893 + Pygo2 protein_coding processed_transcript MGP_CASTEiJ_T0007449.1 MGP_CASTEiJ_G0006109.1 mouse_genomes_project 3 100212962 100249164 + Gm12474 lincRNA lincRNA MGP_CASTEiJ_T0013773.1 MGP_CASTEiJ_G0011936.1 mouse_genomes_project 3 102523826 102524644 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064103.1 MGP_CASTEiJ_G0027110.1 mouse_genomes_project 3 147235322 147265723 - MGP_CASTEiJ_P0064103 Clca1 protein_coding protein_coding MGP_CASTEiJ_T0064104.1 MGP_CASTEiJ_G0027110.1 mouse_genomes_project 3 147236063 147240686 - Clca1 protein_coding processed_transcript MGP_CASTEiJ_T0064105.1 MGP_CASTEiJ_G0027110.1 mouse_genomes_project 3 147245771 147250707 - Clca1 protein_coding processed_transcript MGP_CASTEiJ_T0061468.1 MGP_CASTEiJ_G0026539.1 mouse_genomes_project 3 87693421 87695730 + Nes protein_coding retained_intron MGP_CASTEiJ_T0061469.1 MGP_CASTEiJ_G0026539.1 mouse_genomes_project 3 87693436 87702661 + MGP_CASTEiJ_P0061469 Nes protein_coding protein_coding MGP_CASTEiJ_T0061470.1 MGP_CASTEiJ_G0026539.1 mouse_genomes_project 3 87693472 87702661 + MGP_CASTEiJ_P0061470 Nes protein_coding protein_coding MGP_CASTEiJ_T0004279.1 MGP_CASTEiJ_G0003740.1 mouse_genomes_project 3 156599200 156614751 - Asb17os antisense antisense MGP_CASTEiJ_T0004280.1 MGP_CASTEiJ_G0003740.1 mouse_genomes_project 3 156612914 156614774 - Asb17os antisense antisense MGP_CASTEiJ_T0007472.1 MGP_CASTEiJ_G0006127.1 mouse_genomes_project 3 108542300 108561592 + Gm12524 lincRNA lincRNA MGP_CASTEiJ_T0010235.1 MGP_CASTEiJ_G0008423.1 mouse_genomes_project 3 85045598 85045712 + Mir466k miRNA miRNA MGP_CASTEiJ_T0100942.1 MGP_CASTEiJ_G0037855.1 mouse_genomes_project 3 14485103 14485247 - Gm24963 snoRNA snoRNA MGP_CASTEiJ_T0063560.1 MGP_CASTEiJ_G0027014.1 mouse_genomes_project 3 127563134 127563434 + MGP_CASTEiJ_P0063560 Gm10263 protein_coding protein_coding MGP_CASTEiJ_T0001191.1 MGP_CASTEiJ_G0001122.1 mouse_genomes_project 3 74086373 74088592 - TEC TEC MGP_CASTEiJ_T0100954.1 MGP_CASTEiJ_G0037867.1 mouse_genomes_project 3 47703187 47703316 + Gm22480 snoRNA snoRNA MGP_CASTEiJ_T0013640.1 MGP_CASTEiJ_G0011803.1 mouse_genomes_project 3 59593921 59594300 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102282.1 MGP_CASTEiJ_G0039007.1 mouse_genomes_project 3 88150176 88151249 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011199.1 MGP_CASTEiJ_G0009387.1 mouse_genomes_project 3 6722236 6722545 + Gm22604 misc_RNA misc_RNA MGP_CASTEiJ_T0098889.1 MGP_CASTEiJ_G0035813.1 mouse_genomes_project 3 100350118 100352241 - Gm42869 sense_intronic sense_intronic MGP_CASTEiJ_T0017237.1 MGP_CASTEiJ_G0014833.1 mouse_genomes_project 3 106780176 106784053 - 2010016I18Rik processed_transcript antisense MGP_CASTEiJ_T0017238.1 MGP_CASTEiJ_G0014833.1 mouse_genomes_project 3 106780194 106782021 - 2010016I18Rik processed_transcript antisense MGP_CASTEiJ_T0017239.1 MGP_CASTEiJ_G0014833.1 mouse_genomes_project 3 106780207 106781632 - 2010016I18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017240.1 MGP_CASTEiJ_G0014833.1 mouse_genomes_project 3 106780207 106781648 - 2010016I18Rik processed_transcript retained_intron MGP_CASTEiJ_T0017241.1 MGP_CASTEiJ_G0014833.1 mouse_genomes_project 3 106782256 106783988 - 2010016I18Rik processed_transcript retained_intron MGP_CASTEiJ_T0001119.1 MGP_CASTEiJ_G0001052.1 mouse_genomes_project 3 39932128 39935931 + TEC TEC MGP_CASTEiJ_T0062040.1 MGP_CASTEiJ_G0026637.1 mouse_genomes_project 3 90630158 90633388 + MGP_CASTEiJ_P0062040 S100a5 protein_coding protein_coding MGP_CASTEiJ_T0062041.1 MGP_CASTEiJ_G0026637.1 mouse_genomes_project 3 90631417 90633388 + MGP_CASTEiJ_P0062041 S100a5 protein_coding protein_coding MGP_CASTEiJ_T0001111.1 MGP_CASTEiJ_G0001044.1 mouse_genomes_project 3 35602800 35604068 + TEC TEC MGP_CASTEiJ_T0013836.1 MGP_CASTEiJ_G0011999.1 mouse_genomes_project 3 123909212 123909407 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098882.1 MGP_CASTEiJ_G0035806.1 mouse_genomes_project 3 93966977 93967857 - Gm43774 sense_intronic sense_intronic MGP_CASTEiJ_T0061355.1 MGP_CASTEiJ_G0026516.1 mouse_genomes_project 3 85609918 85620663 - MGP_CASTEiJ_P0061355 Prss48 protein_coding protein_coding MGP_CASTEiJ_T0061337.1 MGP_CASTEiJ_G0026511.1 mouse_genomes_project 3 84372591 84543353 + MGP_CASTEiJ_P0061337 Fbxw7 protein_coding protein_coding MGP_CASTEiJ_T0061338.1 MGP_CASTEiJ_G0026511.1 mouse_genomes_project 3 84372801 84541837 + Fbxw7 protein_coding retained_intron MGP_CASTEiJ_T0061339.1 MGP_CASTEiJ_G0026511.1 mouse_genomes_project 3 84421720 84543353 + MGP_CASTEiJ_P0061339 Fbxw7 protein_coding protein_coding MGP_CASTEiJ_T0061340.1 MGP_CASTEiJ_G0026511.1 mouse_genomes_project 3 84487973 84543352 + MGP_CASTEiJ_P0061340 Fbxw7 protein_coding protein_coding MGP_CASTEiJ_T0061341.1 MGP_CASTEiJ_G0026511.1 mouse_genomes_project 3 84516031 84541801 + MGP_CASTEiJ_P0061341 Fbxw7 protein_coding protein_coding MGP_CASTEiJ_T0060546.1 MGP_CASTEiJ_G0026341.1 mouse_genomes_project 3 35387324 35392000 + MGP_CASTEiJ_P0060546 Spry1 protein_coding protein_coding MGP_CASTEiJ_T0060547.1 MGP_CASTEiJ_G0026341.1 mouse_genomes_project 3 35387335 35392000 + MGP_CASTEiJ_P0060547 Spry1 protein_coding protein_coding MGP_CASTEiJ_T0060548.1 MGP_CASTEiJ_G0026341.1 mouse_genomes_project 3 35387457 35392000 + MGP_CASTEiJ_P0060548 Spry1 protein_coding protein_coding MGP_CASTEiJ_T0013769.1 MGP_CASTEiJ_G0011932.1 mouse_genomes_project 3 101073941 101074378 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013853.1 MGP_CASTEiJ_G0012016.1 mouse_genomes_project 3 130680579 130681335 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007567.1 MGP_CASTEiJ_G0006207.1 mouse_genomes_project 3 148695234 148707024 - Gm10636 lincRNA lincRNA MGP_CASTEiJ_T0098904.1 MGP_CASTEiJ_G0035828.1 mouse_genomes_project 3 103690490 103691556 - Gm43387 sense_intronic sense_intronic MGP_CASTEiJ_T0060022.1 MGP_CASTEiJ_G0026241.1 mouse_genomes_project 3 7795530 7820626 - MGP_CASTEiJ_P0060022 Snx16 protein_coding protein_coding MGP_CASTEiJ_T0060023.1 MGP_CASTEiJ_G0026241.1 mouse_genomes_project 3 7795860 7820611 - MGP_CASTEiJ_P0060023 Snx16 protein_coding protein_coding MGP_CASTEiJ_T0060024.1 MGP_CASTEiJ_G0026241.1 mouse_genomes_project 3 7796648 7820624 - MGP_CASTEiJ_P0060024 Snx16 protein_coding protein_coding MGP_CASTEiJ_T0007326.1 MGP_CASTEiJ_G0006019.1 mouse_genomes_project 3 35965057 35970827 - lincRNA lincRNA MGP_CASTEiJ_T0061046.1 MGP_CASTEiJ_G0026442.1 mouse_genomes_project 3 65750458 66127048 + MGP_CASTEiJ_P0061046 Rsrc1 protein_coding protein_coding MGP_CASTEiJ_T0061047.1 MGP_CASTEiJ_G0026442.1 mouse_genomes_project 3 65754728 65765995 + MGP_CASTEiJ_P0061047 Rsrc1 protein_coding protein_coding MGP_CASTEiJ_T0061048.1 MGP_CASTEiJ_G0026442.1 mouse_genomes_project 3 65754730 66128890 + MGP_CASTEiJ_P0061048 Rsrc1 protein_coding protein_coding MGP_CASTEiJ_T0061049.1 MGP_CASTEiJ_G0026442.1 mouse_genomes_project 3 65754743 65855363 + Rsrc1 protein_coding retained_intron MGP_CASTEiJ_T0061050.1 MGP_CASTEiJ_G0026442.1 mouse_genomes_project 3 65754743 66124214 + MGP_CASTEiJ_P0061050 Rsrc1 protein_coding protein_coding MGP_CASTEiJ_T0061051.1 MGP_CASTEiJ_G0026442.1 mouse_genomes_project 3 65754761 66128885 + MGP_CASTEiJ_P0061051 Rsrc1 protein_coding protein_coding MGP_CASTEiJ_T0061052.1 MGP_CASTEiJ_G0026442.1 mouse_genomes_project 3 65754762 66127047 + MGP_CASTEiJ_P0061052 Rsrc1 protein_coding protein_coding MGP_CASTEiJ_T0061053.1 MGP_CASTEiJ_G0026442.1 mouse_genomes_project 3 65755025 66128891 + MGP_CASTEiJ_P0061053 Rsrc1 protein_coding protein_coding MGP_CASTEiJ_T0061054.1 MGP_CASTEiJ_G0026442.1 mouse_genomes_project 3 65755036 65763862 + MGP_CASTEiJ_P0061054 Rsrc1 protein_coding protein_coding MGP_CASTEiJ_T0061055.1 MGP_CASTEiJ_G0026442.1 mouse_genomes_project 3 65760101 65764043 + Rsrc1 protein_coding retained_intron MGP_CASTEiJ_T0102259.1 MGP_CASTEiJ_G0038984.1 mouse_genomes_project 3 11818593 11832637 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0062008.1 MGP_CASTEiJ_G0026628.1 mouse_genomes_project 3 90504720 90517582 - MGP_CASTEiJ_P0062008 protein_coding protein_coding MGP_CASTEiJ_T0062009.1 MGP_CASTEiJ_G0026628.1 mouse_genomes_project 3 90504720 90517581 - MGP_CASTEiJ_P0062009 protein_coding protein_coding MGP_CASTEiJ_T0062010.1 MGP_CASTEiJ_G0026628.1 mouse_genomes_project 3 90504720 90517580 - MGP_CASTEiJ_P0062010 protein_coding protein_coding MGP_CASTEiJ_T0062011.1 MGP_CASTEiJ_G0026628.1 mouse_genomes_project 3 90504722 90517592 - MGP_CASTEiJ_P0062011 protein_coding protein_coding MGP_CASTEiJ_T0062012.1 MGP_CASTEiJ_G0026628.1 mouse_genomes_project 3 90504729 90517628 - MGP_CASTEiJ_P0062012 protein_coding protein_coding MGP_CASTEiJ_T0062013.1 MGP_CASTEiJ_G0026628.1 mouse_genomes_project 3 90507329 90517615 - MGP_CASTEiJ_P0062013 protein_coding protein_coding MGP_CASTEiJ_T0062014.1 MGP_CASTEiJ_G0026628.1 mouse_genomes_project 3 90510272 90517606 - MGP_CASTEiJ_P0062014 protein_coding protein_coding MGP_CASTEiJ_T0062015.1 MGP_CASTEiJ_G0026628.1 mouse_genomes_project 3 90511245 90517145 - MGP_CASTEiJ_P0062015 protein_coding protein_coding MGP_CASTEiJ_T0062068.1 MGP_CASTEiJ_G0026655.1 mouse_genomes_project 3 91647604 91649241 + MGP_CASTEiJ_P0062068 Sprr2h protein_coding protein_coding MGP_CASTEiJ_T0062069.1 MGP_CASTEiJ_G0026655.1 mouse_genomes_project 3 91647619 91649017 + MGP_CASTEiJ_P0062069 Sprr2h protein_coding protein_coding MGP_CASTEiJ_T0062185.1 MGP_CASTEiJ_G0026711.1 mouse_genomes_project 3 94163681 94198880 - MGP_CASTEiJ_P0062185 Cgn protein_coding protein_coding MGP_CASTEiJ_T0062186.1 MGP_CASTEiJ_G0026711.1 mouse_genomes_project 3 94163681 94198851 - MGP_CASTEiJ_P0062186 Cgn protein_coding protein_coding MGP_CASTEiJ_T0062187.1 MGP_CASTEiJ_G0026711.1 mouse_genomes_project 3 94187583 94198855 - MGP_CASTEiJ_P0062187 Cgn protein_coding protein_coding MGP_CASTEiJ_T0062188.1 MGP_CASTEiJ_G0026711.1 mouse_genomes_project 3 94187583 94198839 - MGP_CASTEiJ_P0062188 Cgn protein_coding protein_coding MGP_CASTEiJ_T0004083.1 MGP_CASTEiJ_G0003606.1 mouse_genomes_project 3 28296093 28297064 - 4933429H19Rik antisense antisense MGP_CASTEiJ_T0004084.1 MGP_CASTEiJ_G0003606.1 mouse_genomes_project 3 28296637 28297060 - 4933429H19Rik antisense antisense MGP_CASTEiJ_T0001287.1 MGP_CASTEiJ_G0001218.1 mouse_genomes_project 3 129114459 129115103 - TEC TEC MGP_CASTEiJ_T0001275.1 MGP_CASTEiJ_G0001206.1 mouse_genomes_project 3 128121367 128124740 - TEC TEC MGP_CASTEiJ_T0098760.1 MGP_CASTEiJ_G0035691.1 mouse_genomes_project 3 108966519 108966933 - Scarna2 scaRNA scaRNA MGP_CASTEiJ_T0007579.1 MGP_CASTEiJ_G0006215.1 mouse_genomes_project 3 152025570 152128040 - Gm31121 lincRNA lincRNA MGP_CASTEiJ_T0007521.1 MGP_CASTEiJ_G0006166.1 mouse_genomes_project 3 135226472 135246869 - Gm42563 lincRNA lincRNA MGP_CASTEiJ_T0063831.1 MGP_CASTEiJ_G0027059.1 mouse_genomes_project 3 136903309 136928097 + MGP_CASTEiJ_P0063831 Bdh2 protein_coding protein_coding MGP_CASTEiJ_T0063832.1 MGP_CASTEiJ_G0027059.1 mouse_genomes_project 3 136903349 136928097 + MGP_CASTEiJ_P0063832 Bdh2 protein_coding protein_coding MGP_CASTEiJ_T0063833.1 MGP_CASTEiJ_G0027059.1 mouse_genomes_project 3 136903371 136906487 + Bdh2 protein_coding retained_intron MGP_CASTEiJ_T0063834.1 MGP_CASTEiJ_G0027059.1 mouse_genomes_project 3 136912213 136928094 + Bdh2 protein_coding processed_transcript MGP_CASTEiJ_T0001065.1 MGP_CASTEiJ_G0000998.1 mouse_genomes_project 3 7667792 7668122 + TEC TEC MGP_CASTEiJ_T0061239.1 MGP_CASTEiJ_G0026486.1 mouse_genomes_project 3 81345699 81370426 + MGP_CASTEiJ_P0061239 Ctso protein_coding protein_coding MGP_CASTEiJ_T0061240.1 MGP_CASTEiJ_G0026486.1 mouse_genomes_project 3 81345721 81346424 + Ctso protein_coding retained_intron MGP_CASTEiJ_T0061241.1 MGP_CASTEiJ_G0026486.1 mouse_genomes_project 3 81345741 81356061 + Ctso protein_coding processed_transcript MGP_CASTEiJ_T0061242.1 MGP_CASTEiJ_G0026486.1 mouse_genomes_project 3 81364668 81368024 + Ctso protein_coding retained_intron MGP_CASTEiJ_T0099748.1 MGP_CASTEiJ_G0036661.1 mouse_genomes_project 3 124404547 124404677 - Gm22713 snRNA snRNA MGP_CASTEiJ_T0059931.1 MGP_CASTEiJ_G0026215.1 mouse_genomes_project 3 634009 815476 + MGP_CASTEiJ_P0059931 Hnf4g protein_coding protein_coding MGP_CASTEiJ_T0059932.1 MGP_CASTEiJ_G0026215.1 mouse_genomes_project 3 788382 815684 + MGP_CASTEiJ_P0059932 Hnf4g protein_coding protein_coding MGP_CASTEiJ_T0062399.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95236376 95247428 - Tars2 protein_coding retained_intron MGP_CASTEiJ_T0062400.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95236376 95252662 - MGP_CASTEiJ_P0062400 Tars2 protein_coding protein_coding MGP_CASTEiJ_T0062401.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95236376 95252662 - MGP_CASTEiJ_P0062401 Tars2 protein_coding protein_coding MGP_CASTEiJ_T0062402.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95236376 95252653 - MGP_CASTEiJ_P0062402 Tars2 protein_coding protein_coding MGP_CASTEiJ_T0062403.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95236376 95252626 - MGP_CASTEiJ_P0062403 Tars2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062404.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95236376 95252642 - MGP_CASTEiJ_P0062404 Tars2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062405.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95236419 95238615 - Tars2 protein_coding processed_transcript MGP_CASTEiJ_T0062406.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95240333 95252674 - MGP_CASTEiJ_P0062406 Tars2 protein_coding protein_coding MGP_CASTEiJ_T0062407.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95242265 95245013 - Tars2 protein_coding processed_transcript MGP_CASTEiJ_T0062408.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95243995 95252662 - MGP_CASTEiJ_P0062408 Tars2 protein_coding protein_coding MGP_CASTEiJ_T0062409.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95244029 95252629 - MGP_CASTEiJ_P0062409 Tars2 protein_coding protein_coding MGP_CASTEiJ_T0062410.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95245032 95252662 - MGP_CASTEiJ_P0062410 Tars2 protein_coding protein_coding MGP_CASTEiJ_T0062411.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95245055 95252145 - Tars2 protein_coding processed_transcript MGP_CASTEiJ_T0062412.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95245057 95252640 - MGP_CASTEiJ_P0062412 Tars2 protein_coding protein_coding MGP_CASTEiJ_T0062413.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95246688 95247428 - Tars2 protein_coding retained_intron MGP_CASTEiJ_T0062414.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95246814 95252608 - Tars2 protein_coding processed_transcript MGP_CASTEiJ_T0062415.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95247149 95252262 - Tars2 protein_coding retained_intron MGP_CASTEiJ_T0062416.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95247213 95252640 - MGP_CASTEiJ_P0062416 Tars2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062417.1 MGP_CASTEiJ_G0026747.1 mouse_genomes_project 3 95252596 95262311 - MGP_CASTEiJ_P0062417 Tars2 protein_coding protein_coding MGP_CASTEiJ_T0013571.1 MGP_CASTEiJ_G0011734.1 mouse_genomes_project 3 35738310 35738786 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063825.1 MGP_CASTEiJ_G0027058.1 mouse_genomes_project 3 136832509 136894644 + MGP_CASTEiJ_P0063825 Cenpe protein_coding protein_coding MGP_CASTEiJ_T0063826.1 MGP_CASTEiJ_G0027058.1 mouse_genomes_project 3 136832631 136894564 + MGP_CASTEiJ_P0063826 Cenpe protein_coding unknown_likely_coding MGP_CASTEiJ_T0063827.1 MGP_CASTEiJ_G0027058.1 mouse_genomes_project 3 136862186 136864596 + MGP_CASTEiJ_P0063827 Cenpe protein_coding protein_coding MGP_CASTEiJ_T0063828.1 MGP_CASTEiJ_G0027058.1 mouse_genomes_project 3 136880060 136880498 + Cenpe protein_coding retained_intron MGP_CASTEiJ_T0063829.1 MGP_CASTEiJ_G0027058.1 mouse_genomes_project 3 136880866 136887212 + Cenpe protein_coding retained_intron MGP_CASTEiJ_T0063830.1 MGP_CASTEiJ_G0027058.1 mouse_genomes_project 3 136891686 136892218 + Cenpe protein_coding retained_intron MGP_CASTEiJ_T0100986.1 MGP_CASTEiJ_G0037899.1 mouse_genomes_project 3 104130710 104130826 + Gm23077 snoRNA snoRNA MGP_CASTEiJ_T0060056.1 MGP_CASTEiJ_G0026253.1 mouse_genomes_project 3 13209451 13290537 - MGP_CASTEiJ_P0060056 Gm5150 protein_coding protein_coding MGP_CASTEiJ_T0060057.1 MGP_CASTEiJ_G0026253.1 mouse_genomes_project 3 13210650 13290432 - MGP_CASTEiJ_P0060057 Gm5150 protein_coding protein_coding MGP_CASTEiJ_T0001139.1 MGP_CASTEiJ_G0001072.1 mouse_genomes_project 3 49762354 49765576 + TEC TEC MGP_CASTEiJ_T0099749.1 MGP_CASTEiJ_G0036662.1 mouse_genomes_project 3 125417968 125418078 + Gm22575 snRNA snRNA MGP_CASTEiJ_T0063346.1 MGP_CASTEiJ_G0026973.1 mouse_genomes_project 3 117221281 117262598 - MGP_CASTEiJ_P0063346 Gm43191 protein_coding protein_coding MGP_CASTEiJ_T0007507.1 MGP_CASTEiJ_G0006154.1 mouse_genomes_project 3 130007751 130010518 - 4933424H11Rik lincRNA lincRNA MGP_CASTEiJ_T0060682.1 MGP_CASTEiJ_G0026364.1 mouse_genomes_project 3 49666493 49670771 - MGP_CASTEiJ_P0060682 Ndufc1 protein_coding protein_coding MGP_CASTEiJ_T0060683.1 MGP_CASTEiJ_G0026364.1 mouse_genomes_project 3 49667282 49669282 - Ndufc1 protein_coding retained_intron MGP_CASTEiJ_T0060684.1 MGP_CASTEiJ_G0026364.1 mouse_genomes_project 3 49667305 49670449 - Ndufc1 protein_coding processed_transcript MGP_CASTEiJ_T0060685.1 MGP_CASTEiJ_G0026364.1 mouse_genomes_project 3 49667409 49670747 - MGP_CASTEiJ_P0060685 Ndufc1 protein_coding protein_coding MGP_CASTEiJ_T0013866.1 MGP_CASTEiJ_G0012029.1 mouse_genomes_project 3 135969931 135970430 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004166.1 MGP_CASTEiJ_G0003667.1 mouse_genomes_project 3 94670150 94681382 + Gm16740 antisense antisense MGP_CASTEiJ_T0098914.1 MGP_CASTEiJ_G0035838.1 mouse_genomes_project 3 104093405 104096681 - Gm43259 sense_intronic sense_intronic MGP_CASTEiJ_T0061764.1 MGP_CASTEiJ_G0026585.1 mouse_genomes_project 3 89117010 89121174 + MGP_CASTEiJ_P0061764 Muc1 protein_coding protein_coding MGP_CASTEiJ_T0061765.1 MGP_CASTEiJ_G0026585.1 mouse_genomes_project 3 89119051 89119895 + Muc1 protein_coding processed_transcript MGP_CASTEiJ_T0061766.1 MGP_CASTEiJ_G0026585.1 mouse_genomes_project 3 89119283 89120988 + Muc1 protein_coding processed_transcript MGP_CASTEiJ_T0064078.1 MGP_CASTEiJ_G0027104.1 mouse_genomes_project 3 146319829 146335120 - MGP_CASTEiJ_P0064078 Lmo4 protein_coding protein_coding MGP_CASTEiJ_T0064079.1 MGP_CASTEiJ_G0027104.1 mouse_genomes_project 3 146319829 146337960 - MGP_CASTEiJ_P0064079 Lmo4 protein_coding protein_coding MGP_CASTEiJ_T0064080.1 MGP_CASTEiJ_G0027104.1 mouse_genomes_project 3 146319932 146335056 - MGP_CASTEiJ_P0064080 Lmo4 protein_coding protein_coding MGP_CASTEiJ_T0064081.1 MGP_CASTEiJ_G0027104.1 mouse_genomes_project 3 146319983 146337960 - MGP_CASTEiJ_P0064081 Lmo4 protein_coding protein_coding MGP_CASTEiJ_T0064082.1 MGP_CASTEiJ_G0027104.1 mouse_genomes_project 3 146320360 146326091 - Lmo4 protein_coding retained_intron MGP_CASTEiJ_T0064083.1 MGP_CASTEiJ_G0027104.1 mouse_genomes_project 3 146325257 146335684 - MGP_CASTEiJ_P0064083 Lmo4 protein_coding protein_coding MGP_CASTEiJ_T0064084.1 MGP_CASTEiJ_G0027104.1 mouse_genomes_project 3 146333490 146337920 - Lmo4 protein_coding retained_intron MGP_CASTEiJ_T0064085.1 MGP_CASTEiJ_G0027104.1 mouse_genomes_project 3 146334350 146335024 - Lmo4 protein_coding retained_intron MGP_CASTEiJ_T0007509.1 MGP_CASTEiJ_G0006156.1 mouse_genomes_project 3 132240857 132241844 + Gm42997 lincRNA lincRNA MGP_CASTEiJ_T0007510.1 MGP_CASTEiJ_G0006156.1 mouse_genomes_project 3 132241000 132289593 + Gm42997 lincRNA lincRNA MGP_CASTEiJ_T0001213.1 MGP_CASTEiJ_G0001144.1 mouse_genomes_project 3 95069931 95071535 + TEC TEC MGP_CASTEiJ_T0007528.1 MGP_CASTEiJ_G0006173.1 mouse_genomes_project 3 138135471 138151593 - 1700030L20Rik lincRNA lincRNA MGP_CASTEiJ_T0013918.1 MGP_CASTEiJ_G0012081.1 mouse_genomes_project 3 155477023 155479362 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063065.1 MGP_CASTEiJ_G0026913.1 mouse_genomes_project 3 108089208 108108647 - MGP_CASTEiJ_P0063065 Csf1 protein_coding protein_coding MGP_CASTEiJ_T0063066.1 MGP_CASTEiJ_G0026913.1 mouse_genomes_project 3 108089208 108108414 - MGP_CASTEiJ_P0063066 Csf1 protein_coding protein_coding MGP_CASTEiJ_T0063067.1 MGP_CASTEiJ_G0026913.1 mouse_genomes_project 3 108091174 108099140 - MGP_CASTEiJ_P0063067 Csf1 protein_coding protein_coding MGP_CASTEiJ_T0063068.1 MGP_CASTEiJ_G0026913.1 mouse_genomes_project 3 108093755 108108420 - MGP_CASTEiJ_P0063068 Csf1 protein_coding protein_coding MGP_CASTEiJ_T0063069.1 MGP_CASTEiJ_G0026913.1 mouse_genomes_project 3 108095893 108108420 - Csf1 protein_coding retained_intron MGP_CASTEiJ_T0063070.1 MGP_CASTEiJ_G0026913.1 mouse_genomes_project 3 108096702 108098902 - MGP_CASTEiJ_P0063070 Csf1 protein_coding protein_coding MGP_CASTEiJ_T0063071.1 MGP_CASTEiJ_G0026913.1 mouse_genomes_project 3 108098540 108108399 - MGP_CASTEiJ_P0063071 Csf1 protein_coding protein_coding MGP_CASTEiJ_T0059958.1 MGP_CASTEiJ_G0026223.1 mouse_genomes_project 3 5739476 5796030 + MGP_CASTEiJ_P0059958 Stmn2 protein_coding protein_coding MGP_CASTEiJ_T0059959.1 MGP_CASTEiJ_G0026223.1 mouse_genomes_project 3 5739631 5782135 + Stmn2 protein_coding retained_intron MGP_CASTEiJ_T0059960.1 MGP_CASTEiJ_G0026223.1 mouse_genomes_project 3 5739702 5775887 + Stmn2 protein_coding retained_intron MGP_CASTEiJ_T0059961.1 MGP_CASTEiJ_G0026223.1 mouse_genomes_project 3 5794689 5795999 + Stmn2 protein_coding processed_transcript MGP_CASTEiJ_T0060336.1 MGP_CASTEiJ_G0026308.1 mouse_genomes_project 3 30114992 30150732 - MGP_CASTEiJ_P0060336 Gnb4 protein_coding protein_coding MGP_CASTEiJ_T0060337.1 MGP_CASTEiJ_G0026308.1 mouse_genomes_project 3 30118654 30150672 - Gnb4 protein_coding retained_intron MGP_CASTEiJ_T0060338.1 MGP_CASTEiJ_G0026308.1 mouse_genomes_project 3 30118654 30150664 - MGP_CASTEiJ_P0060338 Gnb4 protein_coding protein_coding MGP_CASTEiJ_T0060339.1 MGP_CASTEiJ_G0026308.1 mouse_genomes_project 3 30119721 30150669 - MGP_CASTEiJ_P0060339 Gnb4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060340.1 MGP_CASTEiJ_G0026308.1 mouse_genomes_project 3 30122370 30132783 - Gnb4 protein_coding retained_intron MGP_CASTEiJ_T0060341.1 MGP_CASTEiJ_G0026308.1 mouse_genomes_project 3 30125798 30150626 - MGP_CASTEiJ_P0060341 Gnb4 protein_coding protein_coding MGP_CASTEiJ_T0060342.1 MGP_CASTEiJ_G0026308.1 mouse_genomes_project 3 30126792 30150672 - Gnb4 protein_coding retained_intron MGP_CASTEiJ_T0060343.1 MGP_CASTEiJ_G0026308.1 mouse_genomes_project 3 30134434 30150676 - Gnb4 protein_coding retained_intron MGP_CASTEiJ_T0060089.1 MGP_CASTEiJ_G0026262.1 mouse_genomes_project 3 16837458 16855692 - MGP_CASTEiJ_P0060089 1700064H15Rik protein_coding protein_coding MGP_CASTEiJ_T0001286.1 MGP_CASTEiJ_G0001217.1 mouse_genomes_project 3 129075908 129079363 - TEC TEC MGP_CASTEiJ_T0099736.1 MGP_CASTEiJ_G0036649.1 mouse_genomes_project 3 96740774 96740884 - Gm24435 snRNA snRNA MGP_CASTEiJ_T0062516.1 MGP_CASTEiJ_G0026780.1 mouse_genomes_project 3 96121122 96139130 - MGP_CASTEiJ_P0062516 Polr3gl protein_coding protein_coding MGP_CASTEiJ_T0062517.1 MGP_CASTEiJ_G0026780.1 mouse_genomes_project 3 96121607 96124889 - Polr3gl protein_coding retained_intron MGP_CASTEiJ_T0062518.1 MGP_CASTEiJ_G0026780.1 mouse_genomes_project 3 96121615 96123370 - Polr3gl protein_coding retained_intron MGP_CASTEiJ_T0013725.1 MGP_CASTEiJ_G0011888.1 mouse_genomes_project 3 90751730 90752633 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010274.1 MGP_CASTEiJ_G0008462.1 mouse_genomes_project 3 144703115 144703202 - Mir6381 miRNA miRNA MGP_CASTEiJ_T0061417.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87455936 87478183 - MGP_CASTEiJ_P0061417 Pear1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061418.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87457142 87534502 - MGP_CASTEiJ_P0061418 Pear1 protein_coding protein_coding MGP_CASTEiJ_T0061419.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87457142 87478188 - MGP_CASTEiJ_P0061419 Pear1 protein_coding protein_coding MGP_CASTEiJ_T0061420.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87457142 87534451 - MGP_CASTEiJ_P0061420 Pear1 protein_coding protein_coding MGP_CASTEiJ_T0061421.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87457143 87469656 - Pear1 protein_coding retained_intron MGP_CASTEiJ_T0061422.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87457143 87478178 - MGP_CASTEiJ_P0061422 Pear1 protein_coding protein_coding MGP_CASTEiJ_T0061423.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87457143 87478184 - MGP_CASTEiJ_P0061423 Pear1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061424.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87457151 87462082 - Pear1 protein_coding retained_intron MGP_CASTEiJ_T0061425.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87457923 87478178 - MGP_CASTEiJ_P0061425 Pear1 protein_coding protein_coding MGP_CASTEiJ_T0061426.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87459238 87461711 - MGP_CASTEiJ_P0061426 Pear1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061427.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87460219 87464767 - MGP_CASTEiJ_P0061427 Pear1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061428.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87464465 87478178 - MGP_CASTEiJ_P0061428 Pear1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061429.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87465768 87478190 - Pear1 protein_coding retained_intron MGP_CASTEiJ_T0061430.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87466208 87478178 - MGP_CASTEiJ_P0061430 Pear1 protein_coding protein_coding MGP_CASTEiJ_T0061431.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87466221 87478178 - MGP_CASTEiJ_P0061431 Pear1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061432.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87466235 87478201 - MGP_CASTEiJ_P0061432 Pear1 protein_coding protein_coding MGP_CASTEiJ_T0061433.1 MGP_CASTEiJ_G0026530.1 mouse_genomes_project 3 87466933 87478170 - MGP_CASTEiJ_P0061433 Pear1 protein_coding protein_coding MGP_CASTEiJ_T0013793.1 MGP_CASTEiJ_G0011956.1 mouse_genomes_project 3 109015841 109016266 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098879.1 MGP_CASTEiJ_G0035803.1 mouse_genomes_project 3 90009935 90010800 + Gm16540 sense_intronic sense_intronic MGP_CASTEiJ_T0013644.1 MGP_CASTEiJ_G0011807.1 mouse_genomes_project 3 61488021 61488603 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001199.1 MGP_CASTEiJ_G0001130.1 mouse_genomes_project 3 78890405 78891695 - TEC TEC MGP_CASTEiJ_T0098909.1 MGP_CASTEiJ_G0035833.1 mouse_genomes_project 3 104024365 104026837 - Gm42700 sense_intronic sense_intronic MGP_CASTEiJ_T0061585.1 MGP_CASTEiJ_G0026561.1 mouse_genomes_project 3 88331988 88338615 - MGP_CASTEiJ_P0061585 Rab25 protein_coding protein_coding MGP_CASTEiJ_T0061586.1 MGP_CASTEiJ_G0026561.1 mouse_genomes_project 3 88332268 88338564 - MGP_CASTEiJ_P0061586 Rab25 protein_coding protein_coding MGP_CASTEiJ_T0061587.1 MGP_CASTEiJ_G0026561.1 mouse_genomes_project 3 88332635 88333474 - Rab25 protein_coding retained_intron MGP_CASTEiJ_T0061588.1 MGP_CASTEiJ_G0026561.1 mouse_genomes_project 3 88334605 88338597 - Rab25 protein_coding retained_intron MGP_CASTEiJ_T0063136.1 MGP_CASTEiJ_G0026931.1 mouse_genomes_project 3 108658345 108743911 + MGP_CASTEiJ_P0063136 Sort1 protein_coding protein_coding MGP_CASTEiJ_T0063137.1 MGP_CASTEiJ_G0026931.1 mouse_genomes_project 3 108658354 108743979 + MGP_CASTEiJ_P0063137 Sort1 protein_coding protein_coding MGP_CASTEiJ_T0063138.1 MGP_CASTEiJ_G0026931.1 mouse_genomes_project 3 108737948 108743906 + Sort1 protein_coding retained_intron MGP_CASTEiJ_T0007337.1 MGP_CASTEiJ_G0006027.1 mouse_genomes_project 3 39253343 39257665 - Gm42434 lincRNA lincRNA MGP_CASTEiJ_T0007338.1 MGP_CASTEiJ_G0006027.1 mouse_genomes_project 3 39257540 39258171 - Gm42434 lincRNA lincRNA MGP_CASTEiJ_T0001158.1 MGP_CASTEiJ_G0001089.1 mouse_genomes_project 3 51435283 51439868 - TEC TEC MGP_CASTEiJ_T0001082.1 MGP_CASTEiJ_G0001015.1 mouse_genomes_project 3 27709446 27711516 - TEC TEC MGP_CASTEiJ_T0013496.1 MGP_CASTEiJ_G0011659.1 mouse_genomes_project 3 10863103 10863504 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007519.1 MGP_CASTEiJ_G0006164.1 mouse_genomes_project 3 134395257 134431912 - Gm29811 lincRNA lincRNA MGP_CASTEiJ_T0011205.1 MGP_CASTEiJ_G0009393.1 mouse_genomes_project 3 32138659 32138873 + Gm27403 misc_RNA misc_RNA MGP_CASTEiJ_T0013621.1 MGP_CASTEiJ_G0011784.1 mouse_genomes_project 3 56061849 56062394 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062935.1 MGP_CASTEiJ_G0026876.1 mouse_genomes_project 3 105690120 105699167 - MGP_CASTEiJ_P0062935 Ddx20 protein_coding protein_coding MGP_CASTEiJ_T0062936.1 MGP_CASTEiJ_G0026876.1 mouse_genomes_project 3 105691470 105699045 - MGP_CASTEiJ_P0062936 Ddx20 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062937.1 MGP_CASTEiJ_G0026876.1 mouse_genomes_project 3 105693339 105699037 - Ddx20 protein_coding retained_intron MGP_CASTEiJ_T0062938.1 MGP_CASTEiJ_G0026876.1 mouse_genomes_project 3 105694239 105698999 - MGP_CASTEiJ_P0062938 Ddx20 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099743.1 MGP_CASTEiJ_G0036656.1 mouse_genomes_project 3 110351763 110351870 + Gm25681 snRNA snRNA MGP_CASTEiJ_T0061186.1 MGP_CASTEiJ_G0026475.1 mouse_genomes_project 3 78594226 78688649 + MGP_CASTEiJ_P0061186 protein_coding protein_coding MGP_CASTEiJ_T0061187.1 MGP_CASTEiJ_G0026475.1 mouse_genomes_project 3 78604940 78725599 + MGP_CASTEiJ_P0061187 protein_coding protein_coding MGP_CASTEiJ_T0061188.1 MGP_CASTEiJ_G0026475.1 mouse_genomes_project 3 78604943 78689907 + MGP_CASTEiJ_P0061188 protein_coding protein_coding MGP_CASTEiJ_T0063435.1 MGP_CASTEiJ_G0026989.1 mouse_genomes_project 3 122565494 122578506 + MGP_CASTEiJ_P0063435 protein_coding protein_coding MGP_CASTEiJ_T0063436.1 MGP_CASTEiJ_G0026989.1 mouse_genomes_project 3 122566046 122578359 + MGP_CASTEiJ_P0063436 protein_coding protein_coding MGP_CASTEiJ_T0001145.1 MGP_CASTEiJ_G0001077.1 mouse_genomes_project 3 50039875 50044857 - TEC TEC MGP_CASTEiJ_T0062697.1 MGP_CASTEiJ_G0026826.1 mouse_genomes_project 3 100549357 100631177 + MGP_CASTEiJ_P0062697 Vtcn1 protein_coding protein_coding MGP_CASTEiJ_T0013835.1 MGP_CASTEiJ_G0011998.1 mouse_genomes_project 3 123597899 123598405 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013854.1 MGP_CASTEiJ_G0012017.1 mouse_genomes_project 3 130852016 130853056 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062806.1 MGP_CASTEiJ_G0026850.1 mouse_genomes_project 3 103031459 103038994 + MGP_CASTEiJ_P0062806 Bcas2 protein_coding protein_coding MGP_CASTEiJ_T0062807.1 MGP_CASTEiJ_G0026850.1 mouse_genomes_project 3 103031507 103038851 + Bcas2 protein_coding retained_intron MGP_CASTEiJ_T0062808.1 MGP_CASTEiJ_G0026850.1 mouse_genomes_project 3 103031553 103038853 + Bcas2 protein_coding retained_intron MGP_CASTEiJ_T0062809.1 MGP_CASTEiJ_G0026850.1 mouse_genomes_project 3 103031566 103038472 + MGP_CASTEiJ_P0062809 Bcas2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062810.1 MGP_CASTEiJ_G0026850.1 mouse_genomes_project 3 103031576 103038994 + MGP_CASTEiJ_P0062810 Bcas2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062811.1 MGP_CASTEiJ_G0026850.1 mouse_genomes_project 3 103031589 103034566 + Bcas2 protein_coding retained_intron MGP_CASTEiJ_T0013524.1 MGP_CASTEiJ_G0011687.1 mouse_genomes_project 3 17139619 17140179 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060568.1 MGP_CASTEiJ_G0026348.1 mouse_genomes_project 3 38528395 38551164 + MGP_CASTEiJ_P0060568 Plk4 protein_coding protein_coding MGP_CASTEiJ_T0060569.1 MGP_CASTEiJ_G0026348.1 mouse_genomes_project 3 38528404 38539713 + Plk4 protein_coding retained_intron MGP_CASTEiJ_T0060570.1 MGP_CASTEiJ_G0026348.1 mouse_genomes_project 3 38528418 38530004 + Plk4 protein_coding retained_intron MGP_CASTEiJ_T0060571.1 MGP_CASTEiJ_G0026348.1 mouse_genomes_project 3 38528418 38551032 + MGP_CASTEiJ_P0060571 Plk4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060572.1 MGP_CASTEiJ_G0026348.1 mouse_genomes_project 3 38528426 38534408 + Plk4 protein_coding retained_intron MGP_CASTEiJ_T0060573.1 MGP_CASTEiJ_G0026348.1 mouse_genomes_project 3 38528430 38551164 + MGP_CASTEiJ_P0060573 Plk4 protein_coding protein_coding MGP_CASTEiJ_T0060574.1 MGP_CASTEiJ_G0026348.1 mouse_genomes_project 3 38528636 38549358 + MGP_CASTEiJ_P0060574 Plk4 protein_coding protein_coding MGP_CASTEiJ_T0060575.1 MGP_CASTEiJ_G0026348.1 mouse_genomes_project 3 38529162 38533356 + MGP_CASTEiJ_P0060575 Plk4 protein_coding protein_coding MGP_CASTEiJ_T0060576.1 MGP_CASTEiJ_G0026348.1 mouse_genomes_project 3 38529843 38530424 + Plk4 protein_coding retained_intron MGP_CASTEiJ_T0060577.1 MGP_CASTEiJ_G0026348.1 mouse_genomes_project 3 38545676 38551163 + MGP_CASTEiJ_P0060577 Plk4 protein_coding protein_coding MGP_CASTEiJ_T0062037.1 MGP_CASTEiJ_G0026635.1 mouse_genomes_project 3 90623546 90627558 + MGP_CASTEiJ_P0062037 Gm42674 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001189.1 MGP_CASTEiJ_G0001120.1 mouse_genomes_project 3 72024000 72025864 - TEC TEC MGP_CASTEiJ_T0011216.1 MGP_CASTEiJ_G0009404.1 mouse_genomes_project 3 100467775 100468037 - Gm23465 misc_RNA misc_RNA MGP_CASTEiJ_T0001183.1 MGP_CASTEiJ_G0001114.1 mouse_genomes_project 3 64654919 64656482 - TEC TEC MGP_CASTEiJ_T0007569.1 MGP_CASTEiJ_G0006209.1 mouse_genomes_project 3 149735737 149746848 + Gm36831 lincRNA lincRNA MGP_CASTEiJ_T0007297.1 MGP_CASTEiJ_G0005993.1 mouse_genomes_project 3 26198447 26202732 - lincRNA lincRNA MGP_CASTEiJ_T0004225.1 MGP_CASTEiJ_G0003701.1 mouse_genomes_project 3 117211012 117211551 + Gm42457 antisense antisense MGP_CASTEiJ_T0062709.1 MGP_CASTEiJ_G0026830.1 mouse_genomes_project 3 100789152 100861035 - MGP_CASTEiJ_P0062709 Ptgfrn protein_coding protein_coding MGP_CASTEiJ_T0062710.1 MGP_CASTEiJ_G0026830.1 mouse_genomes_project 3 100809909 100824135 - Ptgfrn protein_coding processed_transcript MGP_CASTEiJ_T0062711.1 MGP_CASTEiJ_G0026830.1 mouse_genomes_project 3 100824629 100829394 - Ptgfrn protein_coding retained_intron MGP_CASTEiJ_T0007446.1 MGP_CASTEiJ_G0006106.1 mouse_genomes_project 3 98624972 98628581 - 5730437C11Rik lincRNA lincRNA MGP_CASTEiJ_T0013915.1 MGP_CASTEiJ_G0012078.1 mouse_genomes_project 3 154618091 154618789 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001323.1 MGP_CASTEiJ_G0001253.1 mouse_genomes_project 3 153697802 153702114 - TEC TEC MGP_CASTEiJ_T0061001.1 MGP_CASTEiJ_G0026433.1 mouse_genomes_project 3 62732189 62797724 + MGP_CASTEiJ_P0061001 Gmps protein_coding protein_coding MGP_CASTEiJ_T0061002.1 MGP_CASTEiJ_G0026433.1 mouse_genomes_project 3 62732367 62769499 + MGP_CASTEiJ_P0061002 Gmps protein_coding unknown_likely_coding MGP_CASTEiJ_T0007381.1 MGP_CASTEiJ_G0006059.1 mouse_genomes_project 3 72050018 72182272 + lincRNA lincRNA MGP_CASTEiJ_T0007382.1 MGP_CASTEiJ_G0006059.1 mouse_genomes_project 3 72050053 72588698 + lincRNA lincRNA MGP_CASTEiJ_T0064254.1 MGP_CASTEiJ_G0027139.1 mouse_genomes_project 3 154439966 154484849 - MGP_CASTEiJ_P0064254 Ptgfr protein_coding protein_coding MGP_CASTEiJ_T0064255.1 MGP_CASTEiJ_G0027139.1 mouse_genomes_project 3 154444763 154483237 - MGP_CASTEiJ_P0064255 Ptgfr protein_coding protein_coding MGP_CASTEiJ_T0064256.1 MGP_CASTEiJ_G0027139.1 mouse_genomes_project 3 154445139 154481403 - Ptgfr protein_coding processed_transcript MGP_CASTEiJ_T0013649.1 MGP_CASTEiJ_G0011812.1 mouse_genomes_project 3 62652871 62653161 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010242.1 MGP_CASTEiJ_G0008430.1 mouse_genomes_project 3 89962828 89962886 - Mir7669 miRNA miRNA MGP_CASTEiJ_T0013834.1 MGP_CASTEiJ_G0011997.1 mouse_genomes_project 3 123125129 123126066 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100983.1 MGP_CASTEiJ_G0037896.1 mouse_genomes_project 3 98808116 98808233 - Gm24216 snoRNA snoRNA MGP_CASTEiJ_T0013827.1 MGP_CASTEiJ_G0011990.1 mouse_genomes_project 3 122109292 122109885 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013602.1 MGP_CASTEiJ_G0011765.1 mouse_genomes_project 3 48019647 48020110 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063493.1 MGP_CASTEiJ_G0026999.1 mouse_genomes_project 3 123878425 123882861 + MGP_CASTEiJ_P0063493 Fabp2 protein_coding protein_coding MGP_CASTEiJ_T0017263.1 MGP_CASTEiJ_G0014840.1 mouse_genomes_project 3 124521474 124522315 - Snhg8 processed_transcript lincRNA MGP_CASTEiJ_T0017264.1 MGP_CASTEiJ_G0014840.1 mouse_genomes_project 3 124521477 124522241 - Snhg8 processed_transcript retained_intron MGP_CASTEiJ_T0017265.1 MGP_CASTEiJ_G0014840.1 mouse_genomes_project 3 124521479 124522244 - Snhg8 processed_transcript lincRNA MGP_CASTEiJ_T0060344.1 MGP_CASTEiJ_G0026309.1 mouse_genomes_project 3 30250249 30262147 + MGP_CASTEiJ_P0060344 Actl6a protein_coding protein_coding MGP_CASTEiJ_T0060345.1 MGP_CASTEiJ_G0026309.1 mouse_genomes_project 3 30252456 30271403 + MGP_CASTEiJ_P0060345 Actl6a protein_coding protein_coding MGP_CASTEiJ_T0060346.1 MGP_CASTEiJ_G0026309.1 mouse_genomes_project 3 30252499 30253956 + Actl6a protein_coding retained_intron MGP_CASTEiJ_T0060347.1 MGP_CASTEiJ_G0026309.1 mouse_genomes_project 3 30252714 30262141 + MGP_CASTEiJ_P0060347 Actl6a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060348.1 MGP_CASTEiJ_G0026309.1 mouse_genomes_project 3 30253113 30262190 + MGP_CASTEiJ_P0060348 Actl6a protein_coding protein_coding MGP_CASTEiJ_T0060349.1 MGP_CASTEiJ_G0026309.1 mouse_genomes_project 3 30255312 30256099 + Actl6a protein_coding retained_intron MGP_CASTEiJ_T0060350.1 MGP_CASTEiJ_G0026309.1 mouse_genomes_project 3 30256100 30271203 + MGP_CASTEiJ_P0060350 Actl6a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060351.1 MGP_CASTEiJ_G0026309.1 mouse_genomes_project 3 30262100 30271398 + Actl6a protein_coding retained_intron MGP_CASTEiJ_T0101005.1 MGP_CASTEiJ_G0037918.1 mouse_genomes_project 3 150744444 150744577 - Gm23131 snoRNA snoRNA MGP_CASTEiJ_T0061554.1 MGP_CASTEiJ_G0026557.1 mouse_genomes_project 3 88181334 88195976 - MGP_CASTEiJ_P0061554 Slc25a44 protein_coding protein_coding MGP_CASTEiJ_T0061555.1 MGP_CASTEiJ_G0026557.1 mouse_genomes_project 3 88181334 88195977 - MGP_CASTEiJ_P0061555 Slc25a44 protein_coding protein_coding MGP_CASTEiJ_T0061556.1 MGP_CASTEiJ_G0026557.1 mouse_genomes_project 3 88181335 88196008 - MGP_CASTEiJ_P0061556 Slc25a44 protein_coding protein_coding MGP_CASTEiJ_T0061557.1 MGP_CASTEiJ_G0026557.1 mouse_genomes_project 3 88181335 88195981 - MGP_CASTEiJ_P0061557 Slc25a44 protein_coding protein_coding MGP_CASTEiJ_T0013684.1 MGP_CASTEiJ_G0011847.1 mouse_genomes_project 3 73869008 73869632 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007296.1 MGP_CASTEiJ_G0005992.1 mouse_genomes_project 3 24459796 24462793 + 1700125G22Rik lincRNA lincRNA MGP_CASTEiJ_T0062584.1 MGP_CASTEiJ_G0026797.1 mouse_genomes_project 3 96755515 96773437 + MGP_CASTEiJ_P0062584 Acp6 protein_coding protein_coding MGP_CASTEiJ_T0062585.1 MGP_CASTEiJ_G0026797.1 mouse_genomes_project 3 96755834 96757134 + Acp6 protein_coding retained_intron MGP_CASTEiJ_T0062586.1 MGP_CASTEiJ_G0026797.1 mouse_genomes_project 3 96755841 96765168 + Acp6 protein_coding retained_intron MGP_CASTEiJ_T0062587.1 MGP_CASTEiJ_G0026797.1 mouse_genomes_project 3 96755841 96763903 + Acp6 protein_coding retained_intron MGP_CASTEiJ_T0062588.1 MGP_CASTEiJ_G0026797.1 mouse_genomes_project 3 96764233 96765310 + Acp6 protein_coding retained_intron MGP_CASTEiJ_T0062589.1 MGP_CASTEiJ_G0026797.1 mouse_genomes_project 3 96764951 96770723 + Acp6 protein_coding retained_intron MGP_CASTEiJ_T0062590.1 MGP_CASTEiJ_G0026797.1 mouse_genomes_project 3 96768009 96770752 + Acp6 protein_coding retained_intron MGP_CASTEiJ_T0062591.1 MGP_CASTEiJ_G0026797.1 mouse_genomes_project 3 96769499 96773381 + Acp6 protein_coding retained_intron MGP_CASTEiJ_T0062592.1 MGP_CASTEiJ_G0026797.1 mouse_genomes_project 3 96770862 96774154 + Acp6 protein_coding retained_intron MGP_CASTEiJ_T0007495.1 MGP_CASTEiJ_G0006144.1 mouse_genomes_project 3 122607088 122607912 - Gm43607 lincRNA lincRNA MGP_CASTEiJ_T0001100.1 MGP_CASTEiJ_G0001033.1 mouse_genomes_project 3 33482615 33483167 + TEC TEC MGP_CASTEiJ_T0013683.1 MGP_CASTEiJ_G0011846.1 mouse_genomes_project 3 73374054 73374520 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004096.1 MGP_CASTEiJ_G0003614.1 mouse_genomes_project 3 33638114 33646053 + Mccc1os antisense antisense MGP_CASTEiJ_T0004097.1 MGP_CASTEiJ_G0003614.1 mouse_genomes_project 3 33638191 33648609 + Mccc1os antisense antisense MGP_CASTEiJ_T0004098.1 MGP_CASTEiJ_G0003614.1 mouse_genomes_project 3 33638714 33665861 + Mccc1os antisense antisense MGP_CASTEiJ_T0013886.1 MGP_CASTEiJ_G0012049.1 mouse_genomes_project 3 140372859 140373634 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007298.1 MGP_CASTEiJ_G0005994.1 mouse_genomes_project 3 26251418 26253642 - Gm37867 lincRNA lincRNA MGP_CASTEiJ_T0013592.1 MGP_CASTEiJ_G0011755.1 mouse_genomes_project 3 43723967 43724223 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007516.1 MGP_CASTEiJ_G0006161.1 mouse_genomes_project 3 132455864 132457238 - Gm43349 lincRNA lincRNA MGP_CASTEiJ_T0013654.1 MGP_CASTEiJ_G0011817.1 mouse_genomes_project 3 64790861 64793464 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001080.1 MGP_CASTEiJ_G0001013.1 mouse_genomes_project 3 27660233 27662366 - TEC TEC MGP_CASTEiJ_T0010223.1 MGP_CASTEiJ_G0008411.1 mouse_genomes_project 3 32937609 32937701 + Gm25442 miRNA miRNA MGP_CASTEiJ_T0013475.1 MGP_CASTEiJ_G0011638.1 mouse_genomes_project 3 4653717 4654742 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004281.1 MGP_CASTEiJ_G0003741.1 mouse_genomes_project 3 156683131 156688274 + Gm43400 antisense antisense MGP_CASTEiJ_T0063835.1 MGP_CASTEiJ_G0027060.1 mouse_genomes_project 3 136931361 136968799 + MGP_CASTEiJ_P0063835 Slc9b2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063836.1 MGP_CASTEiJ_G0027060.1 mouse_genomes_project 3 136931392 136951242 + Slc9b2 protein_coding retained_intron MGP_CASTEiJ_T0063837.1 MGP_CASTEiJ_G0027060.1 mouse_genomes_project 3 136931403 136944813 + MGP_CASTEiJ_P0063837 Slc9b2 protein_coding protein_coding MGP_CASTEiJ_T0063838.1 MGP_CASTEiJ_G0027060.1 mouse_genomes_project 3 136931406 136971442 + MGP_CASTEiJ_P0063838 Slc9b2 protein_coding protein_coding MGP_CASTEiJ_T0063839.1 MGP_CASTEiJ_G0027060.1 mouse_genomes_project 3 136956651 136969015 + Slc9b2 protein_coding retained_intron MGP_CASTEiJ_T0013462.1 MGP_CASTEiJ_G0011625.1 mouse_genomes_project 3 1094598 1094934 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007339.1 MGP_CASTEiJ_G0006028.1 mouse_genomes_project 3 39259807 39264219 - Platr4 lincRNA lincRNA MGP_CASTEiJ_T0007340.1 MGP_CASTEiJ_G0006028.1 mouse_genomes_project 3 39263425 39268930 - Platr4 lincRNA lincRNA MGP_CASTEiJ_T0007341.1 MGP_CASTEiJ_G0006028.1 mouse_genomes_project 3 39264547 39268932 - Platr4 lincRNA lincRNA MGP_CASTEiJ_T0061243.1 MGP_CASTEiJ_G0026487.1 mouse_genomes_project 3 81370837 81392777 - MGP_CASTEiJ_P0061243 Tdo2 protein_coding protein_coding MGP_CASTEiJ_T0061244.1 MGP_CASTEiJ_G0026487.1 mouse_genomes_project 3 81372475 81377929 - Tdo2 protein_coding processed_transcript MGP_CASTEiJ_T0061245.1 MGP_CASTEiJ_G0026487.1 mouse_genomes_project 3 81372542 81392777 - MGP_CASTEiJ_P0061245 Tdo2 protein_coding protein_coding MGP_CASTEiJ_T0061246.1 MGP_CASTEiJ_G0026487.1 mouse_genomes_project 3 81374861 81377882 - Tdo2 protein_coding retained_intron MGP_CASTEiJ_T0013913.1 MGP_CASTEiJ_G0012076.1 mouse_genomes_project 3 151645727 151646156 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013636.1 MGP_CASTEiJ_G0011799.1 mouse_genomes_project 3 58674087 58674602 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099710.1 MGP_CASTEiJ_G0036623.1 mouse_genomes_project 3 79111009 79111112 + Gm26420 snRNA snRNA MGP_CASTEiJ_T0061495.1 MGP_CASTEiJ_G0026546.1 mouse_genomes_project 3 87876183 87906667 + MGP_CASTEiJ_P0061495 Mef2d protein_coding protein_coding MGP_CASTEiJ_T0061496.1 MGP_CASTEiJ_G0026546.1 mouse_genomes_project 3 87876383 87903234 + MGP_CASTEiJ_P0061496 Mef2d protein_coding protein_coding MGP_CASTEiJ_T0061497.1 MGP_CASTEiJ_G0026546.1 mouse_genomes_project 3 87876383 87903234 + MGP_CASTEiJ_P0061497 Mef2d protein_coding protein_coding MGP_CASTEiJ_T0061498.1 MGP_CASTEiJ_G0026546.1 mouse_genomes_project 3 87876385 87889590 + Mef2d protein_coding retained_intron MGP_CASTEiJ_T0061499.1 MGP_CASTEiJ_G0026546.1 mouse_genomes_project 3 87876611 87906662 + MGP_CASTEiJ_P0061499 Mef2d protein_coding unknown_likely_coding MGP_CASTEiJ_T0061500.1 MGP_CASTEiJ_G0026546.1 mouse_genomes_project 3 87896565 87903364 + Mef2d protein_coding processed_transcript MGP_CASTEiJ_T0061501.1 MGP_CASTEiJ_G0026546.1 mouse_genomes_project 3 87902830 87903485 + Mef2d protein_coding processed_transcript MGP_CASTEiJ_T0062065.1 MGP_CASTEiJ_G0026652.1 mouse_genomes_project 3 91589944 91597996 + MGP_CASTEiJ_P0062065 Sprr2d protein_coding protein_coding MGP_CASTEiJ_T0060046.1 MGP_CASTEiJ_G0026247.1 mouse_genomes_project 3 12064600 12087293 + MGP_CASTEiJ_P0060046 Car13 protein_coding protein_coding MGP_CASTEiJ_T0062635.1 MGP_CASTEiJ_G0026806.1 mouse_genomes_project 3 97678841 97769361 + Notch2 protein_coding retained_intron MGP_CASTEiJ_T0062636.1 MGP_CASTEiJ_G0026806.1 mouse_genomes_project 3 97678852 97824110 + MGP_CASTEiJ_P0062636 Notch2 protein_coding protein_coding MGP_CASTEiJ_T0060066.1 MGP_CASTEiJ_G0026258.1 mouse_genomes_project 3 16327224 16360425 - MGP_CASTEiJ_P0060066 Armc1 protein_coding protein_coding MGP_CASTEiJ_T0011213.1 MGP_CASTEiJ_G0009401.1 mouse_genomes_project 3 83120095 83120393 - Gm22342 misc_RNA misc_RNA MGP_CASTEiJ_T0004255.1 MGP_CASTEiJ_G0003723.1 mouse_genomes_project 3 137579126 137607962 + antisense antisense MGP_CASTEiJ_T0004256.1 MGP_CASTEiJ_G0003723.1 mouse_genomes_project 3 137607189 137857623 + antisense antisense MGP_CASTEiJ_T0013758.1 MGP_CASTEiJ_G0011921.1 mouse_genomes_project 3 98778958 98779542 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100963.1 MGP_CASTEiJ_G0037876.1 mouse_genomes_project 3 69105048 69105176 - Gm23477 snoRNA snoRNA MGP_CASTEiJ_T0061828.1 MGP_CASTEiJ_G0026599.1 mouse_genomes_project 3 89320315 89323227 - MGP_CASTEiJ_P0061828 Cks1b protein_coding protein_coding MGP_CASTEiJ_T0061829.1 MGP_CASTEiJ_G0026599.1 mouse_genomes_project 3 89320400 89322860 - MGP_CASTEiJ_P0061829 Cks1b protein_coding protein_coding MGP_CASTEiJ_T0061830.1 MGP_CASTEiJ_G0026599.1 mouse_genomes_project 3 89320687 89323063 - MGP_CASTEiJ_P0061830 Cks1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013534.1 MGP_CASTEiJ_G0011697.1 mouse_genomes_project 3 20498242 20498618 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062818.1 MGP_CASTEiJ_G0026852.1 mouse_genomes_project 3 103471010 103537385 + MGP_CASTEiJ_P0062818 Syt6 protein_coding protein_coding MGP_CASTEiJ_T0062819.1 MGP_CASTEiJ_G0026852.1 mouse_genomes_project 3 103471060 103541631 + MGP_CASTEiJ_P0062819 Syt6 protein_coding protein_coding MGP_CASTEiJ_T0062820.1 MGP_CASTEiJ_G0026852.1 mouse_genomes_project 3 103471061 103541631 + MGP_CASTEiJ_P0062820 Syt6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062821.1 MGP_CASTEiJ_G0026852.1 mouse_genomes_project 3 103471079 103539227 + MGP_CASTEiJ_P0062821 Syt6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062822.1 MGP_CASTEiJ_G0026852.1 mouse_genomes_project 3 103471157 103537366 + MGP_CASTEiJ_P0062822 Syt6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062823.1 MGP_CASTEiJ_G0026852.1 mouse_genomes_project 3 103472552 103485659 + MGP_CASTEiJ_P0062823 Syt6 protein_coding protein_coding MGP_CASTEiJ_T0062824.1 MGP_CASTEiJ_G0026852.1 mouse_genomes_project 3 103472597 103541630 + MGP_CASTEiJ_P0062824 Syt6 protein_coding protein_coding MGP_CASTEiJ_T0062825.1 MGP_CASTEiJ_G0026852.1 mouse_genomes_project 3 103472613 103534014 + MGP_CASTEiJ_P0062825 Syt6 protein_coding protein_coding MGP_CASTEiJ_T0063169.1 MGP_CASTEiJ_G0026937.1 mouse_genomes_project 3 108942924 108946391 + 1700013F07Rik protein_coding processed_transcript MGP_CASTEiJ_T0063170.1 MGP_CASTEiJ_G0026937.1 mouse_genomes_project 3 108946231 108952211 + 1700013F07Rik protein_coding processed_transcript MGP_CASTEiJ_T0063171.1 MGP_CASTEiJ_G0026937.1 mouse_genomes_project 3 108946238 108953853 + MGP_CASTEiJ_P0063171 1700013F07Rik protein_coding protein_coding MGP_CASTEiJ_T0061503.1 MGP_CASTEiJ_G0026548.1 mouse_genomes_project 3 87984435 88028346 - MGP_CASTEiJ_P0061503 Gm38392 protein_coding protein_coding MGP_CASTEiJ_T0061504.1 MGP_CASTEiJ_G0026548.1 mouse_genomes_project 3 87986247 88028346 - MGP_CASTEiJ_P0061504 Gm38392 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013617.1 MGP_CASTEiJ_G0011780.1 mouse_genomes_project 3 53092555 53094231 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013790.1 MGP_CASTEiJ_G0011953.1 mouse_genomes_project 3 108356850 108357253 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007373.1 MGP_CASTEiJ_G0006051.1 mouse_genomes_project 3 62185180 62199525 + Gm34240 lincRNA lincRNA MGP_CASTEiJ_T0013792.1 MGP_CASTEiJ_G0011955.1 mouse_genomes_project 3 108841081 108841529 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061214.1 MGP_CASTEiJ_G0026481.1 mouse_genomes_project 3 79088821 79119565 - MGP_CASTEiJ_P0061214 protein_coding unknown_likely_coding MGP_CASTEiJ_T0061215.1 MGP_CASTEiJ_G0026481.1 mouse_genomes_project 3 79108114 79126341 - MGP_CASTEiJ_P0061215 protein_coding protein_coding MGP_CASTEiJ_T0061216.1 MGP_CASTEiJ_G0026481.1 mouse_genomes_project 3 79115153 79126336 - MGP_CASTEiJ_P0061216 protein_coding protein_coding MGP_CASTEiJ_T0061217.1 MGP_CASTEiJ_G0026481.1 mouse_genomes_project 3 79115282 79119470 - protein_coding processed_transcript MGP_CASTEiJ_T0013704.1 MGP_CASTEiJ_G0011867.1 mouse_genomes_project 3 82035724 82036224 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099764.1 MGP_CASTEiJ_G0036677.1 mouse_genomes_project 3 160146353 160146460 - Gm23725 snRNA snRNA MGP_CASTEiJ_T0064086.1 MGP_CASTEiJ_G0027105.1 mouse_genomes_project 3 146584231 146736503 - MGP_CASTEiJ_P0064086 Hs2st1 protein_coding protein_coding MGP_CASTEiJ_T0064087.1 MGP_CASTEiJ_G0027105.1 mouse_genomes_project 3 146609878 146736203 - MGP_CASTEiJ_P0064087 Hs2st1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064088.1 MGP_CASTEiJ_G0027105.1 mouse_genomes_project 3 146734129 146736480 - Hs2st1 protein_coding retained_intron MGP_CASTEiJ_T0013911.1 MGP_CASTEiJ_G0012074.1 mouse_genomes_project 3 149545660 149546110 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004273.1 MGP_CASTEiJ_G0003735.1 mouse_genomes_project 3 151399186 151415644 + Gm43573 antisense antisense MGP_CASTEiJ_T0060901.1 MGP_CASTEiJ_G0026410.1 mouse_genomes_project 3 57717221 57722573 - MGP_CASTEiJ_P0060901 Gpr171 protein_coding protein_coding MGP_CASTEiJ_T0001219.1 MGP_CASTEiJ_G0001150.1 mouse_genomes_project 3 96355509 96356033 + TEC TEC MGP_CASTEiJ_T0001095.1 MGP_CASTEiJ_G0001028.1 mouse_genomes_project 3 31614565 31615644 - TEC TEC MGP_CASTEiJ_T0013908.1 MGP_CASTEiJ_G0012071.1 mouse_genomes_project 3 148907321 148907713 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061236.1 MGP_CASTEiJ_G0026485.1 mouse_genomes_project 3 80392680 80594374 + MGP_CASTEiJ_P0061236 Pdgfc protein_coding protein_coding MGP_CASTEiJ_T0061237.1 MGP_CASTEiJ_G0026485.1 mouse_genomes_project 3 80393427 80594368 + MGP_CASTEiJ_P0061237 Pdgfc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061238.1 MGP_CASTEiJ_G0026485.1 mouse_genomes_project 3 80393679 80591097 + MGP_CASTEiJ_P0061238 Pdgfc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013711.1 MGP_CASTEiJ_G0011874.1 mouse_genomes_project 3 85772530 85772965 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007485.1 MGP_CASTEiJ_G0006139.1 mouse_genomes_project 3 118663580 118667967 + 4921521D15Rik lincRNA lincRNA MGP_CASTEiJ_T0011201.1 MGP_CASTEiJ_G0009389.1 mouse_genomes_project 3 11487414 11487695 - Gm22026 misc_RNA misc_RNA MGP_CASTEiJ_T0010225.1 MGP_CASTEiJ_G0008413.1 mouse_genomes_project 3 38334300 38334392 + Gm23810 miRNA miRNA MGP_CASTEiJ_T0060509.1 MGP_CASTEiJ_G0026334.1 mouse_genomes_project 3 34829959 34835250 - MGP_CASTEiJ_P0060509 Il2 protein_coding protein_coding MGP_CASTEiJ_T0060308.1 MGP_CASTEiJ_G0026302.1 mouse_genomes_project 3 29397344 29718063 + MGP_CASTEiJ_P0060308 Kcnmb2 protein_coding protein_coding MGP_CASTEiJ_T0060309.1 MGP_CASTEiJ_G0026302.1 mouse_genomes_project 3 29671140 29716658 + MGP_CASTEiJ_P0060309 Kcnmb2 protein_coding protein_coding MGP_CASTEiJ_T0062034.1 MGP_CASTEiJ_G0026634.1 mouse_genomes_project 3 90609934 90611188 + MGP_CASTEiJ_P0062034 S100a2 protein_coding protein_coding MGP_CASTEiJ_T0011204.1 MGP_CASTEiJ_G0009392.1 mouse_genomes_project 3 28065620 28066032 - 1600017P15Rik misc_RNA misc_RNA MGP_CASTEiJ_T0013810.1 MGP_CASTEiJ_G0011973.1 mouse_genomes_project 3 114303900 114305549 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001081.1 MGP_CASTEiJ_G0001014.1 mouse_genomes_project 3 27704933 27707066 - TEC TEC MGP_CASTEiJ_T0062830.1 MGP_CASTEiJ_G0026854.1 mouse_genomes_project 3 103646554 103653567 + MGP_CASTEiJ_P0062830 protein_coding protein_coding MGP_CASTEiJ_T0098906.1 MGP_CASTEiJ_G0035830.1 mouse_genomes_project 3 103780336 103782429 + Gm43065 sense_intronic sense_intronic MGP_CASTEiJ_T0001310.1 MGP_CASTEiJ_G0001240.1 mouse_genomes_project 3 137298293 137302178 - TEC TEC MGP_CASTEiJ_T0013703.1 MGP_CASTEiJ_G0011866.1 mouse_genomes_project 3 80958861 80959646 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010214.1 MGP_CASTEiJ_G0008402.1 mouse_genomes_project 3 23921014 23921141 - Gm25773 miRNA miRNA MGP_CASTEiJ_T0063974.1 MGP_CASTEiJ_G0027086.1 mouse_genomes_project 3 140220519 140233733 + MGP_CASTEiJ_P0063974 Adh5 protein_coding protein_coding MGP_CASTEiJ_T0063975.1 MGP_CASTEiJ_G0027086.1 mouse_genomes_project 3 140220537 140223368 + Adh5 protein_coding retained_intron MGP_CASTEiJ_T0063976.1 MGP_CASTEiJ_G0027086.1 mouse_genomes_project 3 140220538 140224257 + Adh5 protein_coding retained_intron MGP_CASTEiJ_T0063977.1 MGP_CASTEiJ_G0027086.1 mouse_genomes_project 3 140220596 140222823 + Adh5 protein_coding retained_intron MGP_CASTEiJ_T0063978.1 MGP_CASTEiJ_G0027086.1 mouse_genomes_project 3 140220596 140225361 + MGP_CASTEiJ_P0063978 Adh5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063979.1 MGP_CASTEiJ_G0027086.1 mouse_genomes_project 3 140220607 140231993 + MGP_CASTEiJ_P0063979 Adh5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063981.1 MGP_CASTEiJ_G0027086.1 mouse_genomes_project 3 140231568 140232431 + Adh5 protein_coding retained_intron MGP_CASTEiJ_T0099713.1 MGP_CASTEiJ_G0036626.1 mouse_genomes_project 3 85574581 85574645 - Gm27811 snRNA snRNA MGP_CASTEiJ_T0060879.1 MGP_CASTEiJ_G0026404.1 mouse_genomes_project 3 57107834 57142797 + MGP_CASTEiJ_P0060879 Eif2a protein_coding protein_coding MGP_CASTEiJ_T0060880.1 MGP_CASTEiJ_G0026404.1 mouse_genomes_project 3 57108055 57131672 + Eif2a protein_coding retained_intron MGP_CASTEiJ_T0060881.1 MGP_CASTEiJ_G0026404.1 mouse_genomes_project 3 57108056 57140941 + MGP_CASTEiJ_P0060881 Eif2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060882.1 MGP_CASTEiJ_G0026404.1 mouse_genomes_project 3 57108069 57142797 + MGP_CASTEiJ_P0060882 Eif2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060883.1 MGP_CASTEiJ_G0026404.1 mouse_genomes_project 3 57108316 57131437 + MGP_CASTEiJ_P0060883 Eif2a protein_coding protein_coding MGP_CASTEiJ_T0060884.1 MGP_CASTEiJ_G0026404.1 mouse_genomes_project 3 57128910 57131672 + Eif2a protein_coding retained_intron MGP_CASTEiJ_T0060885.1 MGP_CASTEiJ_G0026404.1 mouse_genomes_project 3 57130074 57135981 + Eif2a protein_coding retained_intron MGP_CASTEiJ_T0099734.1 MGP_CASTEiJ_G0036647.1 mouse_genomes_project 3 96007720 96037208 - Gm22614 snRNA snRNA MGP_CASTEiJ_T0007314.1 MGP_CASTEiJ_G0006008.1 mouse_genomes_project 3 32374404 32385887 + Gm38509 lincRNA lincRNA MGP_CASTEiJ_T0099730.1 MGP_CASTEiJ_G0036643.1 mouse_genomes_project 3 95305490 95305683 - Gm26361 snRNA snRNA MGP_CASTEiJ_T0062826.1 MGP_CASTEiJ_G0026853.1 mouse_genomes_project 3 103629436 103641422 - Olfml3 protein_coding processed_transcript MGP_CASTEiJ_T0062827.1 MGP_CASTEiJ_G0026853.1 mouse_genomes_project 3 103638861 103645188 - MGP_CASTEiJ_P0062827 Olfml3 protein_coding protein_coding MGP_CASTEiJ_T0062828.1 MGP_CASTEiJ_G0026853.1 mouse_genomes_project 3 103638877 103639751 - MGP_CASTEiJ_P0062828 Olfml3 protein_coding protein_coding MGP_CASTEiJ_T0062829.1 MGP_CASTEiJ_G0026853.1 mouse_genomes_project 3 103640892 103645155 - Olfml3 protein_coding retained_intron MGP_CASTEiJ_T0013887.1 MGP_CASTEiJ_G0012050.1 mouse_genomes_project 3 140401729 140402393 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098930.1 MGP_CASTEiJ_G0035854.1 mouse_genomes_project 3 106043621 106045145 - Gm42721 sense_intronic sense_intronic MGP_CASTEiJ_T0060550.1 MGP_CASTEiJ_G0026343.1 mouse_genomes_project 3 36220261 36256067 - MGP_CASTEiJ_P0060550 protein_coding protein_coding MGP_CASTEiJ_T0060551.1 MGP_CASTEiJ_G0026343.1 mouse_genomes_project 3 36220653 36254316 - MGP_CASTEiJ_P0060551 protein_coding protein_coding MGP_CASTEiJ_T0060552.1 MGP_CASTEiJ_G0026343.1 mouse_genomes_project 3 36223082 36226558 - MGP_CASTEiJ_P0060552 protein_coding protein_coding MGP_CASTEiJ_T0060553.1 MGP_CASTEiJ_G0026343.1 mouse_genomes_project 3 36254475 36256038 - protein_coding processed_transcript MGP_CASTEiJ_T0013549.1 MGP_CASTEiJ_G0011712.1 mouse_genomes_project 3 29776441 29777222 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013480.1 MGP_CASTEiJ_G0011643.1 mouse_genomes_project 3 5911545 5911806 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013851.1 MGP_CASTEiJ_G0012014.1 mouse_genomes_project 3 129563464 129563898 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098594.1 MGP_CASTEiJ_G0035525.1 mouse_genomes_project 3 128982184 128982270 + Gm23279 rRNA rRNA MGP_CASTEiJ_T0004236.1 MGP_CASTEiJ_G0003709.1 mouse_genomes_project 3 127545127 127552000 - Gm17225 antisense antisense MGP_CASTEiJ_T0061454.1 MGP_CASTEiJ_G0026537.1 mouse_genomes_project 3 87635904 87643185 - Rrnad1 protein_coding retained_intron MGP_CASTEiJ_T0061455.1 MGP_CASTEiJ_G0026537.1 mouse_genomes_project 3 87635904 87643185 - MGP_CASTEiJ_P0061455 Rrnad1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061456.1 MGP_CASTEiJ_G0026537.1 mouse_genomes_project 3 87636210 87643202 - MGP_CASTEiJ_P0061456 Rrnad1 protein_coding protein_coding MGP_CASTEiJ_T0061457.1 MGP_CASTEiJ_G0026537.1 mouse_genomes_project 3 87636619 87642419 - Rrnad1 protein_coding retained_intron MGP_CASTEiJ_T0061458.1 MGP_CASTEiJ_G0026537.1 mouse_genomes_project 3 87636938 87641327 - MGP_CASTEiJ_P0061458 Rrnad1 protein_coding protein_coding MGP_CASTEiJ_T0061459.1 MGP_CASTEiJ_G0026537.1 mouse_genomes_project 3 87636939 87638556 - Rrnad1 protein_coding processed_transcript MGP_CASTEiJ_T0061460.1 MGP_CASTEiJ_G0026537.1 mouse_genomes_project 3 87636943 87643202 - Rrnad1 protein_coding retained_intron MGP_CASTEiJ_T0061461.1 MGP_CASTEiJ_G0026537.1 mouse_genomes_project 3 87636943 87643775 - Rrnad1 protein_coding retained_intron MGP_CASTEiJ_T0061462.1 MGP_CASTEiJ_G0026537.1 mouse_genomes_project 3 87637063 87643641 - MGP_CASTEiJ_P0061462 Rrnad1 protein_coding protein_coding MGP_CASTEiJ_T0061463.1 MGP_CASTEiJ_G0026537.1 mouse_genomes_project 3 87638333 87640161 - Rrnad1 protein_coding retained_intron MGP_CASTEiJ_T0061464.1 MGP_CASTEiJ_G0026537.1 mouse_genomes_project 3 87638506 87640777 - Rrnad1 protein_coding processed_transcript MGP_CASTEiJ_T0061465.1 MGP_CASTEiJ_G0026537.1 mouse_genomes_project 3 87638536 87643196 - MGP_CASTEiJ_P0061465 Rrnad1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062304.1 MGP_CASTEiJ_G0026729.1 mouse_genomes_project 3 94671828 94684241 - MGP_CASTEiJ_P0062304 Mllt11 protein_coding protein_coding MGP_CASTEiJ_T0062305.1 MGP_CASTEiJ_G0026729.1 mouse_genomes_project 3 94672734 94687775 - MGP_CASTEiJ_P0062305 Mllt11 protein_coding protein_coding MGP_CASTEiJ_T0062306.1 MGP_CASTEiJ_G0026729.1 mouse_genomes_project 3 94672744 94687778 - MGP_CASTEiJ_P0062306 Mllt11 protein_coding protein_coding MGP_CASTEiJ_T0062307.1 MGP_CASTEiJ_G0026729.1 mouse_genomes_project 3 94683651 94686083 - Mllt11 protein_coding processed_transcript MGP_CASTEiJ_T0062311.1 MGP_CASTEiJ_G0026729.1 mouse_genomes_project 3 94684609 94686009 - Mllt11 protein_coding processed_transcript MGP_CASTEiJ_T0062378.1 MGP_CASTEiJ_G0026743.1 mouse_genomes_project 3 95108956 95109954 + Ensa protein_coding TEC MGP_CASTEiJ_T0062379.1 MGP_CASTEiJ_G0026743.1 mouse_genomes_project 3 95108974 95116078 + MGP_CASTEiJ_P0062379 Ensa protein_coding protein_coding MGP_CASTEiJ_T0062380.1 MGP_CASTEiJ_G0026743.1 mouse_genomes_project 3 95108983 95116078 + MGP_CASTEiJ_P0062380 Ensa protein_coding protein_coding MGP_CASTEiJ_T0062381.1 MGP_CASTEiJ_G0026743.1 mouse_genomes_project 3 95108989 95111491 + Ensa protein_coding retained_intron MGP_CASTEiJ_T0061777.1 MGP_CASTEiJ_G0026588.1 mouse_genomes_project 3 89147490 89156832 + MGP_CASTEiJ_P0061777 Dpm3 protein_coding protein_coding MGP_CASTEiJ_T0061778.1 MGP_CASTEiJ_G0026588.1 mouse_genomes_project 3 89156306 89156832 + MGP_CASTEiJ_P0061778 Dpm3 protein_coding protein_coding MGP_CASTEiJ_T0061779.1 MGP_CASTEiJ_G0026588.1 mouse_genomes_project 3 89156393 89156834 + Dpm3 protein_coding retained_intron MGP_CASTEiJ_T0062977.1 MGP_CASTEiJ_G0026887.1 mouse_genomes_project 3 106154237 106173866 + MGP_CASTEiJ_P0062977 Chia1 protein_coding protein_coding MGP_CASTEiJ_T0062978.1 MGP_CASTEiJ_G0026887.1 mouse_genomes_project 3 106154398 106170373 + MGP_CASTEiJ_P0062978 Chia1 protein_coding protein_coding MGP_CASTEiJ_T0062979.1 MGP_CASTEiJ_G0026887.1 mouse_genomes_project 3 106163376 106169989 + Chia1 protein_coding retained_intron MGP_CASTEiJ_T0013696.1 MGP_CASTEiJ_G0011859.1 mouse_genomes_project 3 77982989 77983852 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064192.1 MGP_CASTEiJ_G0027130.1 mouse_genomes_project 3 148932759 148967686 - MGP_CASTEiJ_P0064192 Dnase2b protein_coding protein_coding MGP_CASTEiJ_T0064193.1 MGP_CASTEiJ_G0027130.1 mouse_genomes_project 3 148932759 148950313 - MGP_CASTEiJ_P0064193 Dnase2b protein_coding protein_coding MGP_CASTEiJ_T0013791.1 MGP_CASTEiJ_G0011954.1 mouse_genomes_project 3 108614624 108615186 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060237.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27379057 27444014 - MGP_CASTEiJ_P0060237 Mecom protein_coding protein_coding MGP_CASTEiJ_T0060238.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27379060 27976280 - MGP_CASTEiJ_P0060238 Mecom protein_coding protein_coding MGP_CASTEiJ_T0060239.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27379067 27444363 - MGP_CASTEiJ_P0060239 Mecom protein_coding protein_coding MGP_CASTEiJ_T0060240.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27379068 27572615 - MGP_CASTEiJ_P0060240 Mecom protein_coding protein_coding MGP_CASTEiJ_T0060241.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27380329 27674105 - MGP_CASTEiJ_P0060241 Mecom protein_coding protein_coding MGP_CASTEiJ_T0060242.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27380478 27426981 - MGP_CASTEiJ_P0060242 Mecom protein_coding protein_coding MGP_CASTEiJ_T0060243.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27380544 27427020 - MGP_CASTEiJ_P0060243 Mecom protein_coding protein_coding MGP_CASTEiJ_T0060244.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27390871 27976069 - MGP_CASTEiJ_P0060244 Mecom protein_coding protein_coding MGP_CASTEiJ_T0060245.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27393260 27976369 - MGP_CASTEiJ_P0060245 Mecom protein_coding protein_coding MGP_CASTEiJ_T0060246.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27405076 28016806 - MGP_CASTEiJ_P0060246 Mecom protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060247.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27411688 27443919 - Mecom protein_coding processed_transcript MGP_CASTEiJ_T0060248.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27411688 27444062 - Mecom protein_coding retained_intron MGP_CASTEiJ_T0060249.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27427046 27442304 - MGP_CASTEiJ_P0060249 Mecom protein_coding protein_coding MGP_CASTEiJ_T0060250.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27445832 27976280 - Mecom protein_coding processed_transcript MGP_CASTEiJ_T0060251.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27671396 27673903 - Mecom protein_coding retained_intron MGP_CASTEiJ_T0060252.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27672522 27976041 - Mecom protein_coding processed_transcript MGP_CASTEiJ_T0060253.1 MGP_CASTEiJ_G0026288.1 mouse_genomes_project 3 27673914 27674262 - MGP_CASTEiJ_P0060253 Mecom protein_coding protein_coding MGP_CASTEiJ_T0001094.1 MGP_CASTEiJ_G0001027.1 mouse_genomes_project 3 31508440 31509388 + TEC TEC MGP_CASTEiJ_T0001071.1 MGP_CASTEiJ_G0001004.1 mouse_genomes_project 3 16340305 16341022 - TEC TEC MGP_CASTEiJ_T0064176.1 MGP_CASTEiJ_G0027126.1 mouse_genomes_project 3 148795715 148809401 - MGP_CASTEiJ_P0064176 Spata1 protein_coding protein_coding MGP_CASTEiJ_T0064177.1 MGP_CASTEiJ_G0027126.1 mouse_genomes_project 3 148795721 148835132 - MGP_CASTEiJ_P0064177 Spata1 protein_coding protein_coding MGP_CASTEiJ_T0064178.1 MGP_CASTEiJ_G0027126.1 mouse_genomes_project 3 148795722 148841044 - MGP_CASTEiJ_P0064178 Spata1 protein_coding protein_coding MGP_CASTEiJ_T0064179.1 MGP_CASTEiJ_G0027126.1 mouse_genomes_project 3 148805543 148817765 - MGP_CASTEiJ_P0064179 Spata1 protein_coding protein_coding MGP_CASTEiJ_T0064180.1 MGP_CASTEiJ_G0027126.1 mouse_genomes_project 3 148809287 148825071 - Spata1 protein_coding processed_transcript MGP_CASTEiJ_T0064181.1 MGP_CASTEiJ_G0027126.1 mouse_genomes_project 3 148816292 148841000 - Spata1 protein_coding processed_transcript MGP_CASTEiJ_T0064182.1 MGP_CASTEiJ_G0027126.1 mouse_genomes_project 3 148826955 148836402 - MGP_CASTEiJ_P0064182 Spata1 protein_coding protein_coding MGP_CASTEiJ_T0063343.1 MGP_CASTEiJ_G0026972.1 mouse_genomes_project 3 117210505 117242194 - MGP_CASTEiJ_P0063343 Mfsd14a protein_coding protein_coding MGP_CASTEiJ_T0063344.1 MGP_CASTEiJ_G0026972.1 mouse_genomes_project 3 117211939 117215837 - Mfsd14a protein_coding retained_intron MGP_CASTEiJ_T0063345.1 MGP_CASTEiJ_G0026972.1 mouse_genomes_project 3 117220678 117225275 - Mfsd14a protein_coding retained_intron MGP_CASTEiJ_T0063347.1 MGP_CASTEiJ_G0026972.1 mouse_genomes_project 3 117227663 117242008 - Mfsd14a protein_coding retained_intron MGP_CASTEiJ_T0063348.1 MGP_CASTEiJ_G0026972.1 mouse_genomes_project 3 117230414 117242127 - Mfsd14a protein_coding retained_intron MGP_CASTEiJ_T0063589.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128065883 128320700 - MGP_CASTEiJ_P0063589 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063590.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128065890 128148312 - MGP_CASTEiJ_P0063590 protein_coding protein_coding MGP_CASTEiJ_T0063591.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128065892 128068326 - protein_coding retained_intron MGP_CASTEiJ_T0063592.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128065892 128089309 - MGP_CASTEiJ_P0063592 protein_coding protein_coding MGP_CASTEiJ_T0063593.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128068265 128075910 - MGP_CASTEiJ_P0063593 protein_coding protein_coding MGP_CASTEiJ_T0063594.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128068266 128075910 - MGP_CASTEiJ_P0063594 protein_coding protein_coding MGP_CASTEiJ_T0063595.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128071688 128074466 - protein_coding retained_intron MGP_CASTEiJ_T0063596.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128079283 128081205 - protein_coding retained_intron MGP_CASTEiJ_T0063597.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128083635 128102053 - MGP_CASTEiJ_P0063597 protein_coding protein_coding MGP_CASTEiJ_T0063598.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128086035 128101852 - MGP_CASTEiJ_P0063598 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063599.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128093034 128598134 - MGP_CASTEiJ_P0063599 protein_coding protein_coding MGP_CASTEiJ_T0063600.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128096110 128148288 - protein_coding retained_intron MGP_CASTEiJ_T0063601.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128104991 128700778 - MGP_CASTEiJ_P0063601 protein_coding protein_coding MGP_CASTEiJ_T0063602.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128106754 128598073 - MGP_CASTEiJ_P0063602 protein_coding protein_coding MGP_CASTEiJ_T0063603.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128165152 128174138 - protein_coding retained_intron MGP_CASTEiJ_T0063604.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128174823 128598106 - MGP_CASTEiJ_P0063604 protein_coding protein_coding MGP_CASTEiJ_T0063605.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128174891 128598106 - MGP_CASTEiJ_P0063605 protein_coding protein_coding MGP_CASTEiJ_T0063606.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128180846 128321240 - MGP_CASTEiJ_P0063606 protein_coding protein_coding MGP_CASTEiJ_T0063607.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128180846 128598042 - MGP_CASTEiJ_P0063607 protein_coding protein_coding MGP_CASTEiJ_T0063608.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128234847 128391354 - MGP_CASTEiJ_P0063608 protein_coding protein_coding MGP_CASTEiJ_T0063609.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128235516 128321132 - protein_coding retained_intron MGP_CASTEiJ_T0063610.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128237325 128598029 - MGP_CASTEiJ_P0063610 protein_coding protein_coding MGP_CASTEiJ_T0063611.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128318609 128321098 - protein_coding retained_intron MGP_CASTEiJ_T0063612.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128511366 128598070 - protein_coding retained_intron MGP_CASTEiJ_T0063613.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128512990 128700430 - protein_coding retained_intron MGP_CASTEiJ_T0063614.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128697533 128700688 - protein_coding retained_intron MGP_CASTEiJ_T0063615.1 MGP_CASTEiJ_G0027016.1 mouse_genomes_project 3 128700090 128700429 - MGP_CASTEiJ_P0063615 protein_coding protein_coding MGP_CASTEiJ_T0100966.1 MGP_CASTEiJ_G0037879.1 mouse_genomes_project 3 78214585 78214717 + Gm23440 snoRNA snoRNA MGP_CASTEiJ_T0013608.1 MGP_CASTEiJ_G0011771.1 mouse_genomes_project 3 49849233 49849546 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062630.1 MGP_CASTEiJ_G0026805.1 mouse_genomes_project 3 97564449 97586646 + MGP_CASTEiJ_P0062630 Sec22b protein_coding protein_coding MGP_CASTEiJ_T0062631.1 MGP_CASTEiJ_G0026805.1 mouse_genomes_project 3 97564475 97585225 + MGP_CASTEiJ_P0062631 Sec22b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062632.1 MGP_CASTEiJ_G0026805.1 mouse_genomes_project 3 97564484 97571034 + MGP_CASTEiJ_P0062632 Sec22b protein_coding protein_coding MGP_CASTEiJ_T0062633.1 MGP_CASTEiJ_G0026805.1 mouse_genomes_project 3 97564486 97578576 + MGP_CASTEiJ_P0062633 Sec22b protein_coding protein_coding MGP_CASTEiJ_T0062634.1 MGP_CASTEiJ_G0026805.1 mouse_genomes_project 3 97570309 97571034 + Sec22b protein_coding processed_transcript MGP_CASTEiJ_T0060437.1 MGP_CASTEiJ_G0026322.1 mouse_genomes_project 3 33646391 33704382 - MGP_CASTEiJ_P0060437 Ccdc144b protein_coding protein_coding MGP_CASTEiJ_T0060438.1 MGP_CASTEiJ_G0026322.1 mouse_genomes_project 3 33650510 33704367 - MGP_CASTEiJ_P0060438 Ccdc144b protein_coding protein_coding MGP_CASTEiJ_T0060439.1 MGP_CASTEiJ_G0026322.1 mouse_genomes_project 3 33656005 33704367 - MGP_CASTEiJ_P0060439 Ccdc144b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0102285.1 MGP_CASTEiJ_G0039010.1 mouse_genomes_project 3 90471574 90473614 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0063616.1 MGP_CASTEiJ_G0027017.1 mouse_genomes_project 3 128749787 128770107 - MGP_CASTEiJ_P0063616 protein_coding protein_coding MGP_CASTEiJ_T0063617.1 MGP_CASTEiJ_G0027017.1 mouse_genomes_project 3 128758200 128761539 - protein_coding retained_intron MGP_CASTEiJ_T0063619.1 MGP_CASTEiJ_G0027017.1 mouse_genomes_project 3 128760506 128769955 - protein_coding retained_intron MGP_CASTEiJ_T0063620.1 MGP_CASTEiJ_G0027017.1 mouse_genomes_project 3 128761172 128770105 - MGP_CASTEiJ_P0063620 protein_coding protein_coding MGP_CASTEiJ_T0010267.1 MGP_CASTEiJ_G0008455.1 mouse_genomes_project 3 135728418 135728545 - Gm44361 miRNA miRNA MGP_CASTEiJ_T0001180.1 MGP_CASTEiJ_G0001111.1 mouse_genomes_project 3 62225428 62225914 + TEC TEC MGP_CASTEiJ_T0001091.1 MGP_CASTEiJ_G0001024.1 mouse_genomes_project 3 30599938 30602776 - TEC TEC MGP_CASTEiJ_T0007447.1 MGP_CASTEiJ_G0006107.1 mouse_genomes_project 3 98734291 98738222 + Gm12440 lincRNA lincRNA MGP_CASTEiJ_T0013846.1 MGP_CASTEiJ_G0012009.1 mouse_genomes_project 3 127563144 127563348 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062580.1 MGP_CASTEiJ_G0026795.1 mouse_genomes_project 3 96486995 96671998 + MGP_CASTEiJ_P0062580 Gja5 protein_coding protein_coding MGP_CASTEiJ_T0062582.1 MGP_CASTEiJ_G0026795.1 mouse_genomes_project 3 96621973 96640331 + MGP_CASTEiJ_P0062582 Gja5 protein_coding protein_coding MGP_CASTEiJ_T0062583.1 MGP_CASTEiJ_G0026795.1 mouse_genomes_project 3 96621973 96643058 + MGP_CASTEiJ_P0062583 Gja5 protein_coding protein_coding MGP_CASTEiJ_T0013838.1 MGP_CASTEiJ_G0012001.1 mouse_genomes_project 3 124141970 124142713 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061175.1 MGP_CASTEiJ_G0026473.1 mouse_genomes_project 3 75171781 75862684 + MGP_CASTEiJ_P0061175 Fstl5 protein_coding protein_coding MGP_CASTEiJ_T0061176.1 MGP_CASTEiJ_G0026473.1 mouse_genomes_project 3 75172070 75696868 + Fstl5 protein_coding processed_transcript MGP_CASTEiJ_T0061177.1 MGP_CASTEiJ_G0026473.1 mouse_genomes_project 3 75173097 75861302 + MGP_CASTEiJ_P0061177 Fstl5 protein_coding protein_coding MGP_CASTEiJ_T0061178.1 MGP_CASTEiJ_G0026473.1 mouse_genomes_project 3 75736478 75739678 + Fstl5 protein_coding retained_intron MGP_CASTEiJ_T0061179.1 MGP_CASTEiJ_G0026473.1 mouse_genomes_project 3 75743007 75860219 + MGP_CASTEiJ_P0061179 Fstl5 protein_coding protein_coding MGP_CASTEiJ_T0063946.1 MGP_CASTEiJ_G0027077.1 mouse_genomes_project 3 139813205 139833863 - MGP_CASTEiJ_P0063946 Gm5105 protein_coding protein_coding MGP_CASTEiJ_T0062941.1 MGP_CASTEiJ_G0026878.1 mouse_genomes_project 3 105742576 105822274 - MGP_CASTEiJ_P0062941 Rap1a protein_coding protein_coding MGP_CASTEiJ_T0062942.1 MGP_CASTEiJ_G0026878.1 mouse_genomes_project 3 105743623 105766836 - MGP_CASTEiJ_P0062942 Rap1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062943.1 MGP_CASTEiJ_G0026878.1 mouse_genomes_project 3 105743964 105822223 - MGP_CASTEiJ_P0062943 Rap1a protein_coding protein_coding MGP_CASTEiJ_T0062944.1 MGP_CASTEiJ_G0026878.1 mouse_genomes_project 3 105753357 105822248 - MGP_CASTEiJ_P0062944 Rap1a protein_coding protein_coding MGP_CASTEiJ_T0061253.1 MGP_CASTEiJ_G0026490.1 mouse_genomes_project 3 81517296 81579492 - MGP_CASTEiJ_P0061253 Gucy1a3 protein_coding protein_coding MGP_CASTEiJ_T0061254.1 MGP_CASTEiJ_G0026490.1 mouse_genomes_project 3 81517306 81580216 - MGP_CASTEiJ_P0061254 Gucy1a3 protein_coding protein_coding MGP_CASTEiJ_T0061255.1 MGP_CASTEiJ_G0026490.1 mouse_genomes_project 3 81519461 81526955 - MGP_CASTEiJ_P0061255 Gucy1a3 protein_coding protein_coding MGP_CASTEiJ_T0061256.1 MGP_CASTEiJ_G0026490.1 mouse_genomes_project 3 81532824 81580218 - Gucy1a3 protein_coding retained_intron MGP_CASTEiJ_T0061257.1 MGP_CASTEiJ_G0026490.1 mouse_genomes_project 3 81545212 81580034 - Gucy1a3 protein_coding processed_transcript MGP_CASTEiJ_T0007497.1 MGP_CASTEiJ_G0006146.1 mouse_genomes_project 3 123586402 123595040 - Gm43568 lincRNA lincRNA MGP_CASTEiJ_T0007498.1 MGP_CASTEiJ_G0006146.1 mouse_genomes_project 3 123592106 123594535 - Gm43568 lincRNA lincRNA MGP_CASTEiJ_T0007499.1 MGP_CASTEiJ_G0006146.1 mouse_genomes_project 3 123593521 123594757 - Gm43568 lincRNA lincRNA MGP_CASTEiJ_T0059995.1 MGP_CASTEiJ_G0026233.1 mouse_genomes_project 3 7548458 7552116 - MGP_CASTEiJ_P0059995 protein_coding protein_coding MGP_CASTEiJ_T0059996.1 MGP_CASTEiJ_G0026233.1 mouse_genomes_project 3 7548460 7552177 - MGP_CASTEiJ_P0059996 protein_coding protein_coding MGP_CASTEiJ_T0059997.1 MGP_CASTEiJ_G0026233.1 mouse_genomes_project 3 7548463 7552116 - MGP_CASTEiJ_P0059997 protein_coding protein_coding MGP_CASTEiJ_T0013892.1 MGP_CASTEiJ_G0012055.1 mouse_genomes_project 3 141961496 141962877 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064039.1 MGP_CASTEiJ_G0027097.1 mouse_genomes_project 3 144573897 144575760 + MGP_CASTEiJ_P0064039 Gbp3 protein_coding protein_coding MGP_CASTEiJ_T0064040.1 MGP_CASTEiJ_G0027097.1 mouse_genomes_project 3 144573923 144599447 + MGP_CASTEiJ_P0064040 Gbp3 protein_coding protein_coding MGP_CASTEiJ_T0064041.1 MGP_CASTEiJ_G0027097.1 mouse_genomes_project 3 144574014 144578127 + MGP_CASTEiJ_P0064041 Gbp3 protein_coding protein_coding MGP_CASTEiJ_T0064042.1 MGP_CASTEiJ_G0027097.1 mouse_genomes_project 3 144574016 144599454 + MGP_CASTEiJ_P0064042 Gbp3 protein_coding protein_coding MGP_CASTEiJ_T0064043.1 MGP_CASTEiJ_G0027097.1 mouse_genomes_project 3 144574046 144579445 + Gbp3 protein_coding processed_transcript MGP_CASTEiJ_T0064044.1 MGP_CASTEiJ_G0027097.1 mouse_genomes_project 3 144574273 144599452 + MGP_CASTEiJ_P0064044 Gbp3 protein_coding protein_coding MGP_CASTEiJ_T0064045.1 MGP_CASTEiJ_G0027097.1 mouse_genomes_project 3 144575056 144578991 + MGP_CASTEiJ_P0064045 Gbp3 protein_coding protein_coding MGP_CASTEiJ_T0063916.1 MGP_CASTEiJ_G0027070.1 mouse_genomes_project 3 139277952 139280761 - Gm4861 protein_coding lincRNA MGP_CASTEiJ_T0063917.1 MGP_CASTEiJ_G0027070.1 mouse_genomes_project 3 139277952 139280761 - MGP_CASTEiJ_P0063917 Gm4861 protein_coding protein_coding MGP_CASTEiJ_T0007530.1 MGP_CASTEiJ_G0006175.1 mouse_genomes_project 3 138684950 138687243 - Gm43356 lincRNA lincRNA MGP_CASTEiJ_T0001067.1 MGP_CASTEiJ_G0001000.1 mouse_genomes_project 3 8179475 8181154 - TEC TEC MGP_CASTEiJ_T0061841.1 MGP_CASTEiJ_G0026602.1 mouse_genomes_project 3 89345283 89360708 + MGP_CASTEiJ_P0061841 Pbxip1 protein_coding protein_coding MGP_CASTEiJ_T0061842.1 MGP_CASTEiJ_G0026602.1 mouse_genomes_project 3 89345289 89355263 + Pbxip1 protein_coding processed_transcript MGP_CASTEiJ_T0061843.1 MGP_CASTEiJ_G0026602.1 mouse_genomes_project 3 89345292 89355901 + MGP_CASTEiJ_P0061843 Pbxip1 protein_coding protein_coding MGP_CASTEiJ_T0061844.1 MGP_CASTEiJ_G0026602.1 mouse_genomes_project 3 89345331 89355211 + MGP_CASTEiJ_P0061844 Pbxip1 protein_coding protein_coding MGP_CASTEiJ_T0061845.1 MGP_CASTEiJ_G0026602.1 mouse_genomes_project 3 89345333 89355255 + MGP_CASTEiJ_P0061845 Pbxip1 protein_coding protein_coding MGP_CASTEiJ_T0001176.1 MGP_CASTEiJ_G0001107.1 mouse_genomes_project 3 57898121 57899652 + TEC TEC MGP_CASTEiJ_T0007375.1 MGP_CASTEiJ_G0006053.1 mouse_genomes_project 3 66327124 66330136 - Gm35299 lincRNA lincRNA MGP_CASTEiJ_T0004108.1 MGP_CASTEiJ_G0003623.1 mouse_genomes_project 3 50097092 50103427 + Gm37229 antisense antisense MGP_CASTEiJ_T0101587.1 MGP_CASTEiJ_G0038454.1 mouse_genomes_project 3 93745662 93746359 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101588.1 MGP_CASTEiJ_G0038454.1 mouse_genomes_project 3 93745838 93746601 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0007410.1 MGP_CASTEiJ_G0006083.1 mouse_genomes_project 3 86829830 86834585 + Gm37855 lincRNA lincRNA MGP_CASTEiJ_T0007278.1 MGP_CASTEiJ_G0005981.1 mouse_genomes_project 3 14556004 14561437 - Gm30340 lincRNA lincRNA MGP_CASTEiJ_T0010244.1 MGP_CASTEiJ_G0008432.1 mouse_genomes_project 3 90252663 90252727 + Mir7012 miRNA miRNA MGP_CASTEiJ_T0099766.1 MGP_CASTEiJ_G0036679.1 mouse_genomes_project 3 160311595 160311702 - Gm23379 snRNA snRNA MGP_CASTEiJ_T0001242.1 MGP_CASTEiJ_G0001173.1 mouse_genomes_project 3 119260169 119261992 + TEC TEC MGP_CASTEiJ_T0013495.1 MGP_CASTEiJ_G0011658.1 mouse_genomes_project 3 10319077 10320031 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061303.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83673013 83824785 - MGP_CASTEiJ_P0061303 Trim2 protein_coding protein_coding MGP_CASTEiJ_T0061304.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83673014 83778508 - MGP_CASTEiJ_P0061304 Trim2 protein_coding protein_coding MGP_CASTEiJ_T0061305.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83673015 83738226 - MGP_CASTEiJ_P0061305 Trim2 protein_coding protein_coding MGP_CASTEiJ_T0061306.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83674451 83738214 - MGP_CASTEiJ_P0061306 Trim2 protein_coding protein_coding MGP_CASTEiJ_T0061307.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83675910 83730183 - MGP_CASTEiJ_P0061307 Trim2 protein_coding protein_coding MGP_CASTEiJ_T0061308.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83676272 83738182 - Trim2 protein_coding retained_intron MGP_CASTEiJ_T0061309.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83676315 83789437 - MGP_CASTEiJ_P0061309 Trim2 protein_coding protein_coding MGP_CASTEiJ_T0061311.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83689784 83704903 - Trim2 protein_coding retained_intron MGP_CASTEiJ_T0061312.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83702849 83738211 - Trim2 protein_coding retained_intron MGP_CASTEiJ_T0061313.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83705041 83705928 - Trim2 protein_coding processed_transcript MGP_CASTEiJ_T0061314.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83706587 83825378 - MGP_CASTEiJ_P0061314 Trim2 protein_coding protein_coding MGP_CASTEiJ_T0061315.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83706598 83825427 - MGP_CASTEiJ_P0061315 Trim2 protein_coding protein_coding MGP_CASTEiJ_T0061316.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83707748 83778065 - MGP_CASTEiJ_P0061316 Trim2 protein_coding protein_coding MGP_CASTEiJ_T0061317.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83721396 83738198 - Trim2 protein_coding retained_intron MGP_CASTEiJ_T0061318.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83722852 83738211 - Trim2 protein_coding retained_intron MGP_CASTEiJ_T0061319.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83725671 83738211 - MGP_CASTEiJ_P0061319 Trim2 protein_coding protein_coding MGP_CASTEiJ_T0061320.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83776338 83778065 - Trim2 protein_coding processed_transcript MGP_CASTEiJ_T0061321.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83820098 83824717 - Trim2 protein_coding processed_transcript MGP_CASTEiJ_T0061322.1 MGP_CASTEiJ_G0026504.1 mouse_genomes_project 3 83824821 83826855 - Trim2 protein_coding processed_transcript MGP_CASTEiJ_T0064500.1 MGP_CASTEiJ_G0027173.1 mouse_genomes_project 3 162717389 162820023 + MGP_CASTEiJ_P0064500 Wls protein_coding protein_coding MGP_CASTEiJ_T0064501.1 MGP_CASTEiJ_G0027173.1 mouse_genomes_project 3 162717454 162822682 + MGP_CASTEiJ_P0064501 Wls protein_coding protein_coding MGP_CASTEiJ_T0064502.1 MGP_CASTEiJ_G0027173.1 mouse_genomes_project 3 162717456 162794435 + Wls protein_coding retained_intron MGP_CASTEiJ_T0064503.1 MGP_CASTEiJ_G0027173.1 mouse_genomes_project 3 162717456 162795409 + Wls protein_coding retained_intron MGP_CASTEiJ_T0064504.1 MGP_CASTEiJ_G0027173.1 mouse_genomes_project 3 162717456 162818902 + MGP_CASTEiJ_P0064504 Wls protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064505.1 MGP_CASTEiJ_G0027173.1 mouse_genomes_project 3 162717627 162754812 + Wls protein_coding retained_intron MGP_CASTEiJ_T0064506.1 MGP_CASTEiJ_G0027173.1 mouse_genomes_project 3 162726073 162730406 + Wls protein_coding retained_intron MGP_CASTEiJ_T0063561.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127729730 127818713 + Camk2d protein_coding processed_transcript MGP_CASTEiJ_T0063562.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127730379 127987319 + MGP_CASTEiJ_P0063562 Camk2d protein_coding protein_coding MGP_CASTEiJ_T0063563.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127730388 127987317 + MGP_CASTEiJ_P0063563 Camk2d protein_coding protein_coding MGP_CASTEiJ_T0063564.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127730426 127987321 + MGP_CASTEiJ_P0063564 Camk2d protein_coding protein_coding MGP_CASTEiJ_T0063565.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127730433 127959853 + MGP_CASTEiJ_P0063565 Camk2d protein_coding protein_coding MGP_CASTEiJ_T0063566.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127730435 127988732 + MGP_CASTEiJ_P0063566 Camk2d protein_coding protein_coding MGP_CASTEiJ_T0063567.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127730437 127909139 + Camk2d protein_coding retained_intron MGP_CASTEiJ_T0063568.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127730438 127982775 + Camk2d protein_coding retained_intron MGP_CASTEiJ_T0063569.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127730438 127952147 + MGP_CASTEiJ_P0063569 Camk2d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063570.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127730448 127985028 + MGP_CASTEiJ_P0063570 Camk2d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063571.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127730463 127986236 + Camk2d protein_coding processed_transcript MGP_CASTEiJ_T0063572.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127730525 127986024 + MGP_CASTEiJ_P0063572 Camk2d protein_coding protein_coding MGP_CASTEiJ_T0063573.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127730628 127988701 + MGP_CASTEiJ_P0063573 Camk2d protein_coding protein_coding MGP_CASTEiJ_T0063574.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127730730 127985539 + MGP_CASTEiJ_P0063574 Camk2d protein_coding protein_coding MGP_CASTEiJ_T0063575.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127730763 127819406 + Camk2d protein_coding retained_intron MGP_CASTEiJ_T0063576.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127730821 127986005 + Camk2d protein_coding retained_intron MGP_CASTEiJ_T0063577.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127730836 127986733 + MGP_CASTEiJ_P0063577 Camk2d protein_coding protein_coding MGP_CASTEiJ_T0063578.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127918068 127924808 + Camk2d protein_coding retained_intron MGP_CASTEiJ_T0063579.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127918641 127950831 + Camk2d protein_coding processed_transcript MGP_CASTEiJ_T0063580.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127924056 127948673 + Camk2d protein_coding retained_intron MGP_CASTEiJ_T0063581.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127935450 127982574 + Camk2d protein_coding retained_intron MGP_CASTEiJ_T0063582.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127938403 127986419 + Camk2d protein_coding retained_intron MGP_CASTEiJ_T0063583.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127941888 127983865 + Camk2d protein_coding retained_intron MGP_CASTEiJ_T0063584.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127941888 127983865 + Camk2d protein_coding retained_intron MGP_CASTEiJ_T0063585.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127943100 127985492 + MGP_CASTEiJ_P0063585 Camk2d protein_coding protein_coding MGP_CASTEiJ_T0063586.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127944686 127947048 + Camk2d protein_coding retained_intron MGP_CASTEiJ_T0063587.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127946022 127985211 + MGP_CASTEiJ_P0063587 Camk2d protein_coding protein_coding MGP_CASTEiJ_T0063588.1 MGP_CASTEiJ_G0027015.1 mouse_genomes_project 3 127947317 127950431 + Camk2d protein_coding retained_intron MGP_CASTEiJ_T0064145.1 MGP_CASTEiJ_G0027118.1 mouse_genomes_project 3 148228392 148235198 + MGP_CASTEiJ_P0064145 2410004B18Rik protein_coding protein_coding MGP_CASTEiJ_T0064146.1 MGP_CASTEiJ_G0027118.1 mouse_genomes_project 3 148228427 148235196 + MGP_CASTEiJ_P0064146 2410004B18Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064147.1 MGP_CASTEiJ_G0027118.1 mouse_genomes_project 3 148228575 148234179 + MGP_CASTEiJ_P0064147 2410004B18Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064148.1 MGP_CASTEiJ_G0027118.1 mouse_genomes_project 3 148228621 148229186 + 2410004B18Rik protein_coding retained_intron MGP_CASTEiJ_T0064149.1 MGP_CASTEiJ_G0027118.1 mouse_genomes_project 3 148228670 148234611 + MGP_CASTEiJ_P0064149 2410004B18Rik protein_coding protein_coding MGP_CASTEiJ_T0064150.1 MGP_CASTEiJ_G0027118.1 mouse_genomes_project 3 148229041 148234222 + 2410004B18Rik protein_coding retained_intron MGP_CASTEiJ_T0064151.1 MGP_CASTEiJ_G0027118.1 mouse_genomes_project 3 148229484 148234567 + MGP_CASTEiJ_P0064151 2410004B18Rik protein_coding protein_coding MGP_CASTEiJ_T0007557.1 MGP_CASTEiJ_G0006199.1 mouse_genomes_project 3 145895100 145897013 + Gm42706 lincRNA lincRNA MGP_CASTEiJ_T0064191.1 MGP_CASTEiJ_G0027129.1 mouse_genomes_project 3 148914926 148978156 + MGP_CASTEiJ_P0064191 Uox protein_coding protein_coding MGP_CASTEiJ_T0064194.1 MGP_CASTEiJ_G0027129.1 mouse_genomes_project 3 148950776 148984726 + MGP_CASTEiJ_P0064194 Uox protein_coding protein_coding MGP_CASTEiJ_T0064195.1 MGP_CASTEiJ_G0027129.1 mouse_genomes_project 3 148950847 148964418 + MGP_CASTEiJ_P0064195 Uox protein_coding protein_coding MGP_CASTEiJ_T0064196.1 MGP_CASTEiJ_G0027129.1 mouse_genomes_project 3 148950864 148983063 + MGP_CASTEiJ_P0064196 Uox protein_coding protein_coding MGP_CASTEiJ_T0064197.1 MGP_CASTEiJ_G0027129.1 mouse_genomes_project 3 148950865 148964536 + Uox protein_coding retained_intron MGP_CASTEiJ_T0064198.1 MGP_CASTEiJ_G0027129.1 mouse_genomes_project 3 148962080 148964441 + Uox protein_coding retained_intron MGP_CASTEiJ_T0098935.1 MGP_CASTEiJ_G0035859.1 mouse_genomes_project 3 146686201 146686978 - Gm43560 sense_intronic sense_intronic MGP_CASTEiJ_T0060709.1 MGP_CASTEiJ_G0026369.1 mouse_genomes_project 3 49962659 50079294 - MGP_CASTEiJ_P0060709 Maml3 protein_coding protein_coding MGP_CASTEiJ_T0060710.1 MGP_CASTEiJ_G0026369.1 mouse_genomes_project 3 49962659 50403727 - MGP_CASTEiJ_P0060710 Maml3 protein_coding protein_coding MGP_CASTEiJ_T0060711.1 MGP_CASTEiJ_G0026369.1 mouse_genomes_project 3 50077140 50079332 - Maml3 protein_coding retained_intron MGP_CASTEiJ_T0063918.1 MGP_CASTEiJ_G0027071.1 mouse_genomes_project 3 139353415 139361255 + MGP_CASTEiJ_P0063918 Ddit4l protein_coding protein_coding MGP_CASTEiJ_T0063919.1 MGP_CASTEiJ_G0027071.1 mouse_genomes_project 3 139353780 139359081 + MGP_CASTEiJ_P0063919 Ddit4l protein_coding protein_coding MGP_CASTEiJ_T0102289.1 MGP_CASTEiJ_G0039014.1 mouse_genomes_project 3 94062301 94161617 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0001146.1 MGP_CASTEiJ_G0001078.1 mouse_genomes_project 3 50113587 50114608 - TEC TEC MGP_CASTEiJ_T0060453.1 MGP_CASTEiJ_G0026326.1 mouse_genomes_project 3 34121685 34150557 - MGP_CASTEiJ_P0060453 Anxa5 protein_coding protein_coding MGP_CASTEiJ_T0060454.1 MGP_CASTEiJ_G0026326.1 mouse_genomes_project 3 34121926 34125095 - Anxa5 protein_coding retained_intron MGP_CASTEiJ_T0060455.1 MGP_CASTEiJ_G0026326.1 mouse_genomes_project 3 34124971 34150322 - MGP_CASTEiJ_P0060455 Anxa5 protein_coding protein_coding MGP_CASTEiJ_T0099683.1 MGP_CASTEiJ_G0036596.1 mouse_genomes_project 3 16778872 16779036 + Gm23330 snRNA snRNA MGP_CASTEiJ_T0099050.1 MGP_CASTEiJ_G0035964.1 mouse_genomes_project 3 91291368 91338290 - 4930511M18Rik sense_overlapping sense_overlapping MGP_CASTEiJ_T0099717.1 MGP_CASTEiJ_G0036630.1 mouse_genomes_project 3 86590268 86590428 + Gm23376 snRNA snRNA MGP_CASTEiJ_T0060440.1 MGP_CASTEiJ_G0026323.1 mouse_genomes_project 3 33717201 33745684 + MGP_CASTEiJ_P0060440 Acad9 protein_coding protein_coding MGP_CASTEiJ_T0060441.1 MGP_CASTEiJ_G0026323.1 mouse_genomes_project 3 33717289 33725797 + MGP_CASTEiJ_P0060441 Acad9 protein_coding protein_coding MGP_CASTEiJ_T0060442.1 MGP_CASTEiJ_G0026323.1 mouse_genomes_project 3 33717294 33741587 + Acad9 protein_coding retained_intron MGP_CASTEiJ_T0060443.1 MGP_CASTEiJ_G0026323.1 mouse_genomes_project 3 33726545 33730478 + Acad9 protein_coding retained_intron MGP_CASTEiJ_T0060444.1 MGP_CASTEiJ_G0026323.1 mouse_genomes_project 3 33728226 33739391 + MGP_CASTEiJ_P0060444 Acad9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060445.1 MGP_CASTEiJ_G0026323.1 mouse_genomes_project 3 33729915 33739043 + Acad9 protein_coding retained_intron MGP_CASTEiJ_T0060446.1 MGP_CASTEiJ_G0026323.1 mouse_genomes_project 3 33729990 33741587 + Acad9 protein_coding retained_intron MGP_CASTEiJ_T0063779.1 MGP_CASTEiJ_G0027050.1 mouse_genomes_project 3 134435079 134507825 - MGP_CASTEiJ_P0063779 Npnt protein_coding protein_coding MGP_CASTEiJ_T0063780.1 MGP_CASTEiJ_G0027050.1 mouse_genomes_project 3 134435096 134507526 - MGP_CASTEiJ_P0063780 Npnt protein_coding protein_coding MGP_CASTEiJ_T0063781.1 MGP_CASTEiJ_G0027050.1 mouse_genomes_project 3 134436017 134507643 - MGP_CASTEiJ_P0063781 Npnt protein_coding protein_coding MGP_CASTEiJ_T0063782.1 MGP_CASTEiJ_G0027050.1 mouse_genomes_project 3 134437764 134507526 - MGP_CASTEiJ_P0063782 Npnt protein_coding protein_coding MGP_CASTEiJ_T0063783.1 MGP_CASTEiJ_G0027050.1 mouse_genomes_project 3 134437764 134507526 - MGP_CASTEiJ_P0063783 Npnt protein_coding protein_coding MGP_CASTEiJ_T0063784.1 MGP_CASTEiJ_G0027050.1 mouse_genomes_project 3 134444524 134459998 - Npnt protein_coding retained_intron MGP_CASTEiJ_T0007592.1 MGP_CASTEiJ_G0006223.1 mouse_genomes_project 3 156549803 156552601 - 5730460C07Rik lincRNA lincRNA MGP_CASTEiJ_T0062955.1 MGP_CASTEiJ_G0026881.1 mouse_genomes_project 3 105952568 105960884 - MGP_CASTEiJ_P0062955 I830077J02Rik protein_coding protein_coding MGP_CASTEiJ_T0062956.1 MGP_CASTEiJ_G0026881.1 mouse_genomes_project 3 105954630 105956257 - MGP_CASTEiJ_P0062956 I830077J02Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062957.1 MGP_CASTEiJ_G0026881.1 mouse_genomes_project 3 105955943 105960836 - I830077J02Rik protein_coding retained_intron MGP_CASTEiJ_T0062555.1 MGP_CASTEiJ_G0026790.1 mouse_genomes_project 3 96273015 96289850 - MGP_CASTEiJ_P0062555 Polr3c protein_coding protein_coding MGP_CASTEiJ_T0062556.1 MGP_CASTEiJ_G0026790.1 mouse_genomes_project 3 96273048 96289663 - MGP_CASTEiJ_P0062556 Polr3c protein_coding protein_coding MGP_CASTEiJ_T0062557.1 MGP_CASTEiJ_G0026790.1 mouse_genomes_project 3 96277989 96285432 - MGP_CASTEiJ_P0062557 Polr3c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062558.1 MGP_CASTEiJ_G0026790.1 mouse_genomes_project 3 96280334 96289698 - Polr3c protein_coding retained_intron MGP_CASTEiJ_T0062559.1 MGP_CASTEiJ_G0026790.1 mouse_genomes_project 3 96285032 96289676 - MGP_CASTEiJ_P0062559 Polr3c protein_coding protein_coding MGP_CASTEiJ_T0062560.1 MGP_CASTEiJ_G0026790.1 mouse_genomes_project 3 96285035 96289697 - MGP_CASTEiJ_P0062560 Polr3c protein_coding protein_coding MGP_CASTEiJ_T0007461.1 MGP_CASTEiJ_G0006119.1 mouse_genomes_project 3 104294840 104310813 - Gm5546 lincRNA lincRNA MGP_CASTEiJ_T0004135.1 MGP_CASTEiJ_G0003645.1 mouse_genomes_project 3 80393663 80397349 - Gm16000 antisense antisense MGP_CASTEiJ_T0010250.1 MGP_CASTEiJ_G0008438.1 mouse_genomes_project 3 95231213 95231276 - Mir7014 miRNA miRNA MGP_CASTEiJ_T0061654.1 MGP_CASTEiJ_G0026571.1 mouse_genomes_project 3 88769206 88778755 - MGP_CASTEiJ_P0061654 Msto1 protein_coding protein_coding MGP_CASTEiJ_T0061655.1 MGP_CASTEiJ_G0026571.1 mouse_genomes_project 3 88773482 88776898 - Msto1 protein_coding retained_intron MGP_CASTEiJ_T0061656.1 MGP_CASTEiJ_G0026571.1 mouse_genomes_project 3 88774453 88778823 - MGP_CASTEiJ_P0061656 Msto1 protein_coding protein_coding MGP_CASTEiJ_T0061657.1 MGP_CASTEiJ_G0026571.1 mouse_genomes_project 3 88774482 88778727 - Msto1 protein_coding retained_intron MGP_CASTEiJ_T0061658.1 MGP_CASTEiJ_G0026571.1 mouse_genomes_project 3 88776181 88778706 - Msto1 protein_coding retained_intron MGP_CASTEiJ_T0100993.1 MGP_CASTEiJ_G0037906.1 mouse_genomes_project 3 120476576 120476707 - Gm23432 snoRNA snoRNA MGP_CASTEiJ_T0060927.1 MGP_CASTEiJ_G0026418.1 mouse_genomes_project 3 58570669 58583297 + MGP_CASTEiJ_P0060927 C130079G13Rik protein_coding protein_coding MGP_CASTEiJ_T0013814.1 MGP_CASTEiJ_G0011977.1 mouse_genomes_project 3 116025593 116026027 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063296.1 MGP_CASTEiJ_G0026963.1 mouse_genomes_project 3 116535657 116536669 + Extl2 protein_coding processed_transcript MGP_CASTEiJ_T0063297.1 MGP_CASTEiJ_G0026963.1 mouse_genomes_project 3 116535695 116552240 + Extl2 protein_coding processed_transcript MGP_CASTEiJ_T0063298.1 MGP_CASTEiJ_G0026963.1 mouse_genomes_project 3 116536000 116539047 + Extl2 protein_coding processed_transcript MGP_CASTEiJ_T0063299.1 MGP_CASTEiJ_G0026963.1 mouse_genomes_project 3 116538870 116562824 + MGP_CASTEiJ_P0063299 Extl2 protein_coding protein_coding MGP_CASTEiJ_T0013502.1 MGP_CASTEiJ_G0011665.1 mouse_genomes_project 3 11903515 11903655 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001093.1 MGP_CASTEiJ_G0001026.1 mouse_genomes_project 3 30964358 30965823 - TEC TEC MGP_CASTEiJ_T0062109.1 MGP_CASTEiJ_G0026690.1 mouse_genomes_project 3 92488056 92492728 + MGP_CASTEiJ_P0062109 Crnn protein_coding protein_coding MGP_CASTEiJ_T0062110.1 MGP_CASTEiJ_G0026690.1 mouse_genomes_project 3 92488058 92493058 + MGP_CASTEiJ_P0062110 Crnn protein_coding protein_coding MGP_CASTEiJ_T0062111.1 MGP_CASTEiJ_G0026690.1 mouse_genomes_project 3 92491466 92493057 + MGP_CASTEiJ_P0062111 Crnn protein_coding protein_coding MGP_CASTEiJ_T0001320.1 MGP_CASTEiJ_G0001250.1 mouse_genomes_project 3 149750378 149754834 - TEC TEC MGP_CASTEiJ_T0100988.1 MGP_CASTEiJ_G0037901.1 mouse_genomes_project 3 108831078 108831202 + Gm22942 snoRNA snoRNA MGP_CASTEiJ_T0101579.1 MGP_CASTEiJ_G0038451.1 mouse_genomes_project 3 11984973 11985253 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0013857.1 MGP_CASTEiJ_G0012020.1 mouse_genomes_project 3 132273267 132273565 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060852.1 MGP_CASTEiJ_G0026398.1 mouse_genomes_project 3 56182081 56190708 - MGP_CASTEiJ_P0060852 Commd2 protein_coding protein_coding MGP_CASTEiJ_T0060853.1 MGP_CASTEiJ_G0026398.1 mouse_genomes_project 3 56185609 56190701 - MGP_CASTEiJ_P0060853 Commd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060854.1 MGP_CASTEiJ_G0026398.1 mouse_genomes_project 3 56190093 56190708 - Commd2 protein_coding retained_intron MGP_CASTEiJ_T0060556.1 MGP_CASTEiJ_G0026345.1 mouse_genomes_project 3 38346767 38370097 + MGP_CASTEiJ_P0060556 Intu protein_coding protein_coding MGP_CASTEiJ_T0060557.1 MGP_CASTEiJ_G0026345.1 mouse_genomes_project 3 38357276 38426073 + MGP_CASTEiJ_P0060557 Intu protein_coding protein_coding MGP_CASTEiJ_T0060558.1 MGP_CASTEiJ_G0026345.1 mouse_genomes_project 3 38391654 38414133 + MGP_CASTEiJ_P0060558 Intu protein_coding protein_coding MGP_CASTEiJ_T0007333.1 MGP_CASTEiJ_G0006024.1 mouse_genomes_project 3 38932402 38943780 - Gm42784 lincRNA lincRNA MGP_CASTEiJ_T0063758.1 MGP_CASTEiJ_G0027045.1 mouse_genomes_project 3 132972403 133135854 + MGP_CASTEiJ_P0063758 Papss1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063759.1 MGP_CASTEiJ_G0027045.1 mouse_genomes_project 3 133044908 133127158 + MGP_CASTEiJ_P0063759 Papss1 protein_coding protein_coding MGP_CASTEiJ_T0063760.1 MGP_CASTEiJ_G0027045.1 mouse_genomes_project 3 133044944 133127158 + MGP_CASTEiJ_P0063760 Papss1 protein_coding protein_coding MGP_CASTEiJ_T0063761.1 MGP_CASTEiJ_G0027045.1 mouse_genomes_project 3 133044971 133127157 + MGP_CASTEiJ_P0063761 Papss1 protein_coding protein_coding MGP_CASTEiJ_T0063762.1 MGP_CASTEiJ_G0027045.1 mouse_genomes_project 3 133045005 133127157 + MGP_CASTEiJ_P0063762 Papss1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063763.1 MGP_CASTEiJ_G0027045.1 mouse_genomes_project 3 133045075 133064058 + MGP_CASTEiJ_P0063763 Papss1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062864.1 MGP_CASTEiJ_G0026861.1 mouse_genomes_project 3 103833145 103886602 + MGP_CASTEiJ_P0062864 Rsbn1 protein_coding protein_coding MGP_CASTEiJ_T0062865.1 MGP_CASTEiJ_G0026861.1 mouse_genomes_project 3 103833176 103886625 + MGP_CASTEiJ_P0062865 Rsbn1 protein_coding protein_coding MGP_CASTEiJ_T0062866.1 MGP_CASTEiJ_G0026861.1 mouse_genomes_project 3 103833592 103883860 + MGP_CASTEiJ_P0062866 Rsbn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062867.1 MGP_CASTEiJ_G0026861.1 mouse_genomes_project 3 103848590 103880129 + MGP_CASTEiJ_P0062867 Rsbn1 protein_coding protein_coding MGP_CASTEiJ_T0013925.1 MGP_CASTEiJ_G0012088.1 mouse_genomes_project 3 159145112 159145578 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060470.1 MGP_CASTEiJ_G0026330.1 mouse_genomes_project 3 34250421 34297175 - MGP_CASTEiJ_P0060470 Bbs7 protein_coding protein_coding MGP_CASTEiJ_T0060471.1 MGP_CASTEiJ_G0026330.1 mouse_genomes_project 3 34250421 34297263 - MGP_CASTEiJ_P0060471 Bbs7 protein_coding protein_coding MGP_CASTEiJ_T0060472.1 MGP_CASTEiJ_G0026330.1 mouse_genomes_project 3 34252154 34297071 - MGP_CASTEiJ_P0060472 Bbs7 protein_coding protein_coding MGP_CASTEiJ_T0060473.1 MGP_CASTEiJ_G0026330.1 mouse_genomes_project 3 34253060 34254571 - Bbs7 protein_coding retained_intron MGP_CASTEiJ_T0060474.1 MGP_CASTEiJ_G0026330.1 mouse_genomes_project 3 34292634 34297175 - Bbs7 protein_coding retained_intron MGP_CASTEiJ_T0060475.1 MGP_CASTEiJ_G0026330.1 mouse_genomes_project 3 34293477 34297175 - MGP_CASTEiJ_P0060475 Bbs7 protein_coding protein_coding MGP_CASTEiJ_T0061258.1 MGP_CASTEiJ_G0026491.1 mouse_genomes_project 3 81808213 81833592 + MGP_CASTEiJ_P0061258 Map9 protein_coding protein_coding MGP_CASTEiJ_T0061259.1 MGP_CASTEiJ_G0026491.1 mouse_genomes_project 3 81808241 81844536 + MGP_CASTEiJ_P0061259 Map9 protein_coding protein_coding MGP_CASTEiJ_T0061260.1 MGP_CASTEiJ_G0026491.1 mouse_genomes_project 3 81808241 81828966 + MGP_CASTEiJ_P0061260 Map9 protein_coding protein_coding MGP_CASTEiJ_T0061261.1 MGP_CASTEiJ_G0026491.1 mouse_genomes_project 3 81808339 81833528 + MGP_CASTEiJ_P0061261 Map9 protein_coding protein_coding MGP_CASTEiJ_T0061262.1 MGP_CASTEiJ_G0026491.1 mouse_genomes_project 3 81808356 81844536 + MGP_CASTEiJ_P0061262 Map9 protein_coding protein_coding MGP_CASTEiJ_T0061263.1 MGP_CASTEiJ_G0026491.1 mouse_genomes_project 3 81808414 81831971 + MGP_CASTEiJ_P0061263 Map9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0061264.1 MGP_CASTEiJ_G0026491.1 mouse_genomes_project 3 81829717 81831942 + Map9 protein_coding retained_intron MGP_CASTEiJ_T0061265.1 MGP_CASTEiJ_G0026491.1 mouse_genomes_project 3 81830105 81833311 + MGP_CASTEiJ_P0061265 Map9 protein_coding protein_coding MGP_CASTEiJ_T0010252.1 MGP_CASTEiJ_G0008440.1 mouse_genomes_project 3 97338788 97338842 - Mir7225 miRNA miRNA MGP_CASTEiJ_T0063980.1 MGP_CASTEiJ_G0027087.1 mouse_genomes_project 3 140227630 140271643 - MGP_CASTEiJ_P0063980 Metap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063982.1 MGP_CASTEiJ_G0027087.1 mouse_genomes_project 3 140237186 140271711 - MGP_CASTEiJ_P0063982 Metap1 protein_coding protein_coding MGP_CASTEiJ_T0063983.1 MGP_CASTEiJ_G0027087.1 mouse_genomes_project 3 140237911 140245700 - MGP_CASTEiJ_P0063983 Metap1 protein_coding protein_coding MGP_CASTEiJ_T0063984.1 MGP_CASTEiJ_G0027087.1 mouse_genomes_project 3 140243028 140251911 - Metap1 protein_coding retained_intron MGP_CASTEiJ_T0063985.1 MGP_CASTEiJ_G0027087.1 mouse_genomes_project 3 140243089 140252001 - Metap1 protein_coding retained_intron MGP_CASTEiJ_T0063986.1 MGP_CASTEiJ_G0027087.1 mouse_genomes_project 3 140245698 140258612 - Metap1 protein_coding processed_transcript MGP_CASTEiJ_T0063987.1 MGP_CASTEiJ_G0027087.1 mouse_genomes_project 3 140252256 140271595 - MGP_CASTEiJ_P0063987 Metap1 protein_coding protein_coding MGP_CASTEiJ_T0063988.1 MGP_CASTEiJ_G0027087.1 mouse_genomes_project 3 140256958 140271565 - Metap1 protein_coding retained_intron MGP_CASTEiJ_T0099711.1 MGP_CASTEiJ_G0036624.1 mouse_genomes_project 3 85517553 85517660 - Gm26204 snRNA snRNA MGP_CASTEiJ_T0061938.1 MGP_CASTEiJ_G0026615.1 mouse_genomes_project 3 90061264 90184846 + MGP_CASTEiJ_P0061938 Nup210l protein_coding protein_coding MGP_CASTEiJ_T0061939.1 MGP_CASTEiJ_G0026615.1 mouse_genomes_project 3 90061266 90184877 + MGP_CASTEiJ_P0061939 Nup210l protein_coding protein_coding MGP_CASTEiJ_T0007452.1 MGP_CASTEiJ_G0006112.1 mouse_genomes_project 3 101544168 101546018 + Gm43134 lincRNA lincRNA MGP_CASTEiJ_T0102261.1 MGP_CASTEiJ_G0038986.1 mouse_genomes_project 3 20207496 20209889 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013743.1 MGP_CASTEiJ_G0011906.1 mouse_genomes_project 3 94886345 94886746 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013845.1 MGP_CASTEiJ_G0012008.1 mouse_genomes_project 3 127385910 127387152 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062072.1 MGP_CASTEiJ_G0026658.1 mouse_genomes_project 3 91699713 91701072 + MGP_CASTEiJ_P0062072 Sprr2k protein_coding protein_coding MGP_CASTEiJ_T0061791.1 MGP_CASTEiJ_G0026591.1 mouse_genomes_project 3 89212397 89221508 - MGP_CASTEiJ_P0061791 Efna3 protein_coding protein_coding MGP_CASTEiJ_T0061792.1 MGP_CASTEiJ_G0026591.1 mouse_genomes_project 3 89213889 89221430 - MGP_CASTEiJ_P0061792 Efna3 protein_coding protein_coding MGP_CASTEiJ_T0061793.1 MGP_CASTEiJ_G0026591.1 mouse_genomes_project 3 89214381 89220152 - Efna3 protein_coding processed_transcript MGP_CASTEiJ_T0062649.1 MGP_CASTEiJ_G0026812.1 mouse_genomes_project 3 98316051 98329576 - MGP_CASTEiJ_P0062649 protein_coding protein_coding MGP_CASTEiJ_T0063741.1 MGP_CASTEiJ_G0027041.1 mouse_genomes_project 3 132669634 132789193 + MGP_CASTEiJ_P0063741 Lef1 protein_coding protein_coding MGP_CASTEiJ_T0063742.1 MGP_CASTEiJ_G0027041.1 mouse_genomes_project 3 132669634 132789193 + MGP_CASTEiJ_P0063742 Lef1 protein_coding protein_coding MGP_CASTEiJ_T0063743.1 MGP_CASTEiJ_G0027041.1 mouse_genomes_project 3 132669634 132789193 + MGP_CASTEiJ_P0063743 Lef1 protein_coding protein_coding MGP_CASTEiJ_T0063744.1 MGP_CASTEiJ_G0027041.1 mouse_genomes_project 3 132671990 132678167 + Lef1 protein_coding retained_intron MGP_CASTEiJ_T0063745.1 MGP_CASTEiJ_G0027041.1 mouse_genomes_project 3 132671990 132789193 + MGP_CASTEiJ_P0063745 Lef1 protein_coding protein_coding MGP_CASTEiJ_T0063746.1 MGP_CASTEiJ_G0027041.1 mouse_genomes_project 3 132671999 132750698 + Lef1 protein_coding retained_intron MGP_CASTEiJ_T0063747.1 MGP_CASTEiJ_G0027041.1 mouse_genomes_project 3 132673008 132747340 + Lef1 protein_coding retained_intron MGP_CASTEiJ_T0063748.1 MGP_CASTEiJ_G0027041.1 mouse_genomes_project 3 132673050 132766880 + Lef1 protein_coding processed_transcript MGP_CASTEiJ_T0013691.1 MGP_CASTEiJ_G0011854.1 mouse_genomes_project 3 77156222 77157628 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063510.1 MGP_CASTEiJ_G0027003.1 mouse_genomes_project 3 124071008 124111665 - MGP_CASTEiJ_P0063510 Synpo2 protein_coding protein_coding MGP_CASTEiJ_T0063511.1 MGP_CASTEiJ_G0027003.1 mouse_genomes_project 3 124071008 124238111 - MGP_CASTEiJ_P0063511 Synpo2 protein_coding protein_coding MGP_CASTEiJ_T0063512.1 MGP_CASTEiJ_G0027003.1 mouse_genomes_project 3 124071008 124238060 - MGP_CASTEiJ_P0063512 Synpo2 protein_coding protein_coding MGP_CASTEiJ_T0063513.1 MGP_CASTEiJ_G0027003.1 mouse_genomes_project 3 124101225 124238111 - MGP_CASTEiJ_P0063513 Synpo2 protein_coding protein_coding MGP_CASTEiJ_T0063514.1 MGP_CASTEiJ_G0027003.1 mouse_genomes_project 3 124103309 124111841 - MGP_CASTEiJ_P0063514 Synpo2 protein_coding protein_coding MGP_CASTEiJ_T0063515.1 MGP_CASTEiJ_G0027003.1 mouse_genomes_project 3 124109860 124120105 - MGP_CASTEiJ_P0063515 Synpo2 protein_coding protein_coding MGP_CASTEiJ_T0063516.1 MGP_CASTEiJ_G0027003.1 mouse_genomes_project 3 124175674 124238113 - Synpo2 protein_coding processed_transcript MGP_CASTEiJ_T0102262.1 MGP_CASTEiJ_G0038987.1 mouse_genomes_project 3 58048754 58048989 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0007407.1 MGP_CASTEiJ_G0006080.1 mouse_genomes_project 3 84969276 85003503 - Gm42813 lincRNA lincRNA MGP_CASTEiJ_T0013824.1 MGP_CASTEiJ_G0011987.1 mouse_genomes_project 3 120585980 120587806 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007396.1 MGP_CASTEiJ_G0006070.1 mouse_genomes_project 3 80301433 80309567 + Gm42468 lincRNA lincRNA MGP_CASTEiJ_T0062096.1 MGP_CASTEiJ_G0026679.1 mouse_genomes_project 3 92109306 92113527 - MGP_CASTEiJ_P0062096 Kprp protein_coding protein_coding MGP_CASTEiJ_T0001114.1 MGP_CASTEiJ_G0001047.1 mouse_genomes_project 3 37437852 37440778 + TEC TEC MGP_CASTEiJ_T0099744.1 MGP_CASTEiJ_G0036657.1 mouse_genomes_project 3 111038782 111038887 - Gm26076 snRNA snRNA MGP_CASTEiJ_T0007475.1 MGP_CASTEiJ_G0006130.1 mouse_genomes_project 3 109517209 109519026 - 4930408K08Rik lincRNA lincRNA MGP_CASTEiJ_T0062515.1 MGP_CASTEiJ_G0026779.1 mouse_genomes_project 3 96120238 96123878 + MGP_CASTEiJ_P0062515 Gm16253 protein_coding protein_coding MGP_CASTEiJ_T0001208.1 MGP_CASTEiJ_G0001139.1 mouse_genomes_project 3 89095829 89098574 + TEC TEC MGP_CASTEiJ_T0100976.1 MGP_CASTEiJ_G0037889.1 mouse_genomes_project 3 88917200 88917330 - Gm24403 snoRNA snoRNA MGP_CASTEiJ_T0013855.1 MGP_CASTEiJ_G0012018.1 mouse_genomes_project 3 131561992 131562343 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098894.1 MGP_CASTEiJ_G0035818.1 mouse_genomes_project 3 101183542 101184614 + Gm42938 sense_intronic sense_intronic MGP_CASTEiJ_T0061814.1 MGP_CASTEiJ_G0026595.1 mouse_genomes_project 3 89264582 89270647 + MGP_CASTEiJ_P0061814 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0013859.1 MGP_CASTEiJ_G0012022.1 mouse_genomes_project 3 132851128 132852132 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100989.1 MGP_CASTEiJ_G0037902.1 mouse_genomes_project 3 112744700 112744826 - Gm25519 snoRNA snoRNA MGP_CASTEiJ_T0007294.1 MGP_CASTEiJ_G0005990.1 mouse_genomes_project 3 20214856 20217807 + Gm37021 lincRNA lincRNA MGP_CASTEiJ_T0013474.1 MGP_CASTEiJ_G0011637.1 mouse_genomes_project 3 4653717 4654739 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061124.1 MGP_CASTEiJ_G0026460.1 mouse_genomes_project 3 68411179 68434102 - MGP_CASTEiJ_P0061124 B3galnt1 protein_coding protein_coding MGP_CASTEiJ_T0013699.1 MGP_CASTEiJ_G0011862.1 mouse_genomes_project 3 78855589 78856292 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061180.1 MGP_CASTEiJ_G0026474.1 mouse_genomes_project 3 78302190 78387994 - MGP_CASTEiJ_P0061180 Rapgef2 protein_coding protein_coding MGP_CASTEiJ_T0061181.1 MGP_CASTEiJ_G0026474.1 mouse_genomes_project 3 78302202 78388897 - MGP_CASTEiJ_P0061181 Rapgef2 protein_coding protein_coding MGP_CASTEiJ_T0061182.1 MGP_CASTEiJ_G0026474.1 mouse_genomes_project 3 78302205 78537026 - MGP_CASTEiJ_P0061182 Rapgef2 protein_coding protein_coding MGP_CASTEiJ_T0061183.1 MGP_CASTEiJ_G0026474.1 mouse_genomes_project 3 78350553 78415577 - Rapgef2 protein_coding retained_intron MGP_CASTEiJ_T0061184.1 MGP_CASTEiJ_G0026474.1 mouse_genomes_project 3 78353670 78415679 - Rapgef2 protein_coding processed_transcript MGP_CASTEiJ_T0061185.1 MGP_CASTEiJ_G0026474.1 mouse_genomes_project 3 78411786 78423664 - Rapgef2 protein_coding retained_intron MGP_CASTEiJ_T0001268.1 MGP_CASTEiJ_G0001199.1 mouse_genomes_project 3 127760953 127763868 + TEC TEC MGP_CASTEiJ_T0062755.1 MGP_CASTEiJ_G0026842.1 mouse_genomes_project 3 102619906 102628283 - Tshb protein_coding retained_intron MGP_CASTEiJ_T0062756.1 MGP_CASTEiJ_G0026842.1 mouse_genomes_project 3 102625864 102630767 - MGP_CASTEiJ_P0062756 Tshb protein_coding protein_coding MGP_CASTEiJ_T0062757.1 MGP_CASTEiJ_G0026842.1 mouse_genomes_project 3 102625864 102630727 - MGP_CASTEiJ_P0062757 Tshb protein_coding protein_coding MGP_CASTEiJ_T0062758.1 MGP_CASTEiJ_G0026842.1 mouse_genomes_project 3 102625873 102630771 - MGP_CASTEiJ_P0062758 Tshb protein_coding protein_coding MGP_CASTEiJ_T0062759.1 MGP_CASTEiJ_G0026842.1 mouse_genomes_project 3 102625885 102630727 - MGP_CASTEiJ_P0062759 Tshb protein_coding protein_coding MGP_CASTEiJ_T0062760.1 MGP_CASTEiJ_G0026842.1 mouse_genomes_project 3 102625912 102630536 - MGP_CASTEiJ_P0062760 Tshb protein_coding protein_coding MGP_CASTEiJ_T0013550.1 MGP_CASTEiJ_G0011713.1 mouse_genomes_project 3 30767977 30768209 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007450.1 MGP_CASTEiJ_G0006110.1 mouse_genomes_project 3 100420948 100428266 + Gm43464 lincRNA lincRNA MGP_CASTEiJ_T0064172.1 MGP_CASTEiJ_G0027125.1 mouse_genomes_project 3 148784218 148787343 + Ctbs protein_coding retained_intron MGP_CASTEiJ_T0064173.1 MGP_CASTEiJ_G0027125.1 mouse_genomes_project 3 148784893 148805453 + MGP_CASTEiJ_P0064173 Ctbs protein_coding protein_coding MGP_CASTEiJ_T0064174.1 MGP_CASTEiJ_G0027125.1 mouse_genomes_project 3 148784901 148795861 + MGP_CASTEiJ_P0064174 Ctbs protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064175.1 MGP_CASTEiJ_G0027125.1 mouse_genomes_project 3 148784916 148805375 + MGP_CASTEiJ_P0064175 Ctbs protein_coding protein_coding MGP_CASTEiJ_T0013734.1 MGP_CASTEiJ_G0011897.1 mouse_genomes_project 3 92560293 92561875 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013548.1 MGP_CASTEiJ_G0011711.1 mouse_genomes_project 3 28483854 28484317 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063730.1 MGP_CASTEiJ_G0027039.1 mouse_genomes_project 3 132206619 132220124 - MGP_CASTEiJ_P0063730 Ostc protein_coding protein_coding MGP_CASTEiJ_T0063731.1 MGP_CASTEiJ_G0027039.1 mouse_genomes_project 3 132206626 132207327 - Ostc protein_coding retained_intron MGP_CASTEiJ_T0063732.1 MGP_CASTEiJ_G0027039.1 mouse_genomes_project 3 132218389 132220096 - Ostc protein_coding retained_intron MGP_CASTEiJ_T0062551.1 MGP_CASTEiJ_G0026789.1 mouse_genomes_project 3 96267592 96270073 - MGP_CASTEiJ_P0062551 Nudt17 protein_coding protein_coding MGP_CASTEiJ_T0062552.1 MGP_CASTEiJ_G0026789.1 mouse_genomes_project 3 96267593 96268769 - Nudt17 protein_coding retained_intron MGP_CASTEiJ_T0062553.1 MGP_CASTEiJ_G0026789.1 mouse_genomes_project 3 96267594 96270088 - MGP_CASTEiJ_P0062553 Nudt17 protein_coding protein_coding MGP_CASTEiJ_T0062554.1 MGP_CASTEiJ_G0026789.1 mouse_genomes_project 3 96267693 96270065 - MGP_CASTEiJ_P0062554 Nudt17 protein_coding protein_coding MGP_CASTEiJ_T0099720.1 MGP_CASTEiJ_G0036633.1 mouse_genomes_project 3 88970053 88970157 - Gm22935 snRNA snRNA MGP_CASTEiJ_T0061395.1 MGP_CASTEiJ_G0026526.1 mouse_genomes_project 3 87125389 87164731 + MGP_CASTEiJ_P0061395 Fcrl5 protein_coding protein_coding MGP_CASTEiJ_T0061396.1 MGP_CASTEiJ_G0026526.1 mouse_genomes_project 3 87125429 87192022 + MGP_CASTEiJ_P0061396 Fcrl5 protein_coding protein_coding MGP_CASTEiJ_T0061397.1 MGP_CASTEiJ_G0026526.1 mouse_genomes_project 3 87125501 87153034 + MGP_CASTEiJ_P0061397 Fcrl5 protein_coding protein_coding MGP_CASTEiJ_T0061398.1 MGP_CASTEiJ_G0026526.1 mouse_genomes_project 3 87125501 87153034 + MGP_CASTEiJ_P0061398 Fcrl5 protein_coding protein_coding MGP_CASTEiJ_T0061399.1 MGP_CASTEiJ_G0026526.1 mouse_genomes_project 3 87125501 87153034 + MGP_CASTEiJ_P0061399 Fcrl5 protein_coding protein_coding MGP_CASTEiJ_T0062892.1 MGP_CASTEiJ_G0026866.1 mouse_genomes_project 3 104732167 104742309 - MGP_CASTEiJ_P0062892 Fam19a3 protein_coding protein_coding MGP_CASTEiJ_T0062893.1 MGP_CASTEiJ_G0026866.1 mouse_genomes_project 3 104742122 104746627 - Fam19a3 protein_coding processed_transcript MGP_CASTEiJ_T0004162.1 MGP_CASTEiJ_G0003664.1 mouse_genomes_project 3 94396887 94399861 - B230398E01Rik antisense antisense MGP_CASTEiJ_T0062607.1 MGP_CASTEiJ_G0026801.1 mouse_genomes_project 3 97272338 97302055 + MGP_CASTEiJ_P0062607 Fmo5 protein_coding protein_coding MGP_CASTEiJ_T0062608.1 MGP_CASTEiJ_G0026801.1 mouse_genomes_project 3 97272372 97297421 + MGP_CASTEiJ_P0062608 Fmo5 protein_coding protein_coding MGP_CASTEiJ_T0062609.1 MGP_CASTEiJ_G0026801.1 mouse_genomes_project 3 97272382 97273487 + Fmo5 protein_coding retained_intron MGP_CASTEiJ_T0062610.1 MGP_CASTEiJ_G0026801.1 mouse_genomes_project 3 97272391 97297471 + MGP_CASTEiJ_P0062610 Fmo5 protein_coding protein_coding MGP_CASTEiJ_T0062611.1 MGP_CASTEiJ_G0026801.1 mouse_genomes_project 3 97272417 97283925 + Fmo5 protein_coding processed_transcript MGP_CASTEiJ_T0062499.1 MGP_CASTEiJ_G0026770.1 mouse_genomes_project 3 95836093 95837482 + MGP_CASTEiJ_P0062499 Hist2h3b protein_coding protein_coding MGP_CASTEiJ_T0060849.1 MGP_CASTEiJ_G0026397.1 mouse_genomes_project 3 55982587 56108610 - MGP_CASTEiJ_P0060849 Wwtr1 protein_coding protein_coding MGP_CASTEiJ_T0060850.1 MGP_CASTEiJ_G0026397.1 mouse_genomes_project 3 55982720 56108692 - MGP_CASTEiJ_P0060850 Wwtr1 protein_coding protein_coding MGP_CASTEiJ_T0060851.1 MGP_CASTEiJ_G0026397.1 mouse_genomes_project 3 56101842 56108324 - MGP_CASTEiJ_P0060851 Wwtr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0062899.1 MGP_CASTEiJ_G0026869.1 mouse_genomes_project 3 104759623 104783206 - MGP_CASTEiJ_P0062899 Mov10 protein_coding protein_coding MGP_CASTEiJ_T0062900.1 MGP_CASTEiJ_G0026869.1 mouse_genomes_project 3 104759623 104783528 - MGP_CASTEiJ_P0062900 Mov10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062901.1 MGP_CASTEiJ_G0026869.1 mouse_genomes_project 3 104759623 104783528 - MGP_CASTEiJ_P0062901 Mov10 protein_coding protein_coding MGP_CASTEiJ_T0062902.1 MGP_CASTEiJ_G0026869.1 mouse_genomes_project 3 104759623 104783528 - MGP_CASTEiJ_P0062902 Mov10 protein_coding protein_coding MGP_CASTEiJ_T0062903.1 MGP_CASTEiJ_G0026869.1 mouse_genomes_project 3 104759623 104783270 - MGP_CASTEiJ_P0062903 Mov10 protein_coding protein_coding MGP_CASTEiJ_T0062904.1 MGP_CASTEiJ_G0026869.1 mouse_genomes_project 3 104770016 104782319 - Mov10 protein_coding processed_transcript MGP_CASTEiJ_T0062905.1 MGP_CASTEiJ_G0026869.1 mouse_genomes_project 3 104770057 104783528 - MGP_CASTEiJ_P0062905 Mov10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062906.1 MGP_CASTEiJ_G0026869.1 mouse_genomes_project 3 104770879 104783081 - Mov10 protein_coding retained_intron MGP_CASTEiJ_T0062907.1 MGP_CASTEiJ_G0026869.1 mouse_genomes_project 3 104770900 104783266 - Mov10 protein_coding processed_transcript MGP_CASTEiJ_T0062279.1 MGP_CASTEiJ_G0026726.1 mouse_genomes_project 3 94587421 94590252 - MGP_CASTEiJ_P0062279 Tnfaip8l2 protein_coding protein_coding MGP_CASTEiJ_T0060878.1 MGP_CASTEiJ_G0026403.1 mouse_genomes_project 3 57101835 57107906 - MGP_CASTEiJ_P0060878 Serp1 protein_coding protein_coding MGP_CASTEiJ_T0007277.1 MGP_CASTEiJ_G0005980.1 mouse_genomes_project 3 12589249 12611611 - Gm33819 lincRNA lincRNA MGP_CASTEiJ_T0001122.1 MGP_CASTEiJ_G0001055.1 mouse_genomes_project 3 43173306 43175887 - TEC TEC MGP_CASTEiJ_T0102276.1 MGP_CASTEiJ_G0039001.1 mouse_genomes_project 3 78309185 78309708 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0004189.1 MGP_CASTEiJ_G0003682.1 mouse_genomes_project 3 102561478 102576506 - Tspan2os antisense antisense MGP_CASTEiJ_T0013687.1 MGP_CASTEiJ_G0011850.1 mouse_genomes_project 3 75977562 75977906 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007453.1 MGP_CASTEiJ_G0006113.1 mouse_genomes_project 3 102082557 102083143 + Gm43241 lincRNA lincRNA MGP_CASTEiJ_T0062103.1 MGP_CASTEiJ_G0026686.1 mouse_genomes_project 3 92253343 92253877 + MGP_CASTEiJ_P0062103 protein_coding protein_coding MGP_CASTEiJ_T0010220.1 MGP_CASTEiJ_G0008408.1 mouse_genomes_project 3 30826163 30826268 - Gm27974 miRNA miRNA MGP_CASTEiJ_T0013653.1 MGP_CASTEiJ_G0011816.1 mouse_genomes_project 3 64771146 64771397 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001322.1 MGP_CASTEiJ_G0001252.1 mouse_genomes_project 3 150974287 150974827 + TEC TEC MGP_CASTEiJ_T0001264.1 MGP_CASTEiJ_G0001195.1 mouse_genomes_project 3 125405247 125406184 - TEC TEC MGP_CASTEiJ_T0062509.1 MGP_CASTEiJ_G0026778.1 mouse_genomes_project 3 96101237 96105164 + MGP_CASTEiJ_P0062509 Txnip protein_coding protein_coding MGP_CASTEiJ_T0062510.1 MGP_CASTEiJ_G0026778.1 mouse_genomes_project 3 96101240 96105138 + MGP_CASTEiJ_P0062510 Txnip protein_coding protein_coding MGP_CASTEiJ_T0062511.1 MGP_CASTEiJ_G0026778.1 mouse_genomes_project 3 96102778 96103294 + Txnip protein_coding retained_intron MGP_CASTEiJ_T0062512.1 MGP_CASTEiJ_G0026778.1 mouse_genomes_project 3 96102791 96103485 + Txnip protein_coding processed_transcript MGP_CASTEiJ_T0062513.1 MGP_CASTEiJ_G0026778.1 mouse_genomes_project 3 96103003 96105139 + Txnip protein_coding processed_transcript MGP_CASTEiJ_T0062514.1 MGP_CASTEiJ_G0026778.1 mouse_genomes_project 3 96103334 96103846 + Txnip protein_coding retained_intron MGP_CASTEiJ_T0100987.1 MGP_CASTEiJ_G0037900.1 mouse_genomes_project 3 108398289 108398420 + Gm25592 snoRNA snoRNA MGP_CASTEiJ_T0013489.1 MGP_CASTEiJ_G0011652.1 mouse_genomes_project 3 7705610 7713957 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004271.1 MGP_CASTEiJ_G0003734.1 mouse_genomes_project 3 148995602 149005367 + Gm16325 antisense antisense MGP_CASTEiJ_T0004272.1 MGP_CASTEiJ_G0003734.1 mouse_genomes_project 3 149002260 149003164 + Gm16325 antisense antisense MGP_CASTEiJ_T0063697.1 MGP_CASTEiJ_G0027033.1 mouse_genomes_project 3 131336510 131358825 + MGP_CASTEiJ_P0063697 Pla2g12a protein_coding protein_coding MGP_CASTEiJ_T0063698.1 MGP_CASTEiJ_G0027033.1 mouse_genomes_project 3 131336718 131357929 + MGP_CASTEiJ_P0063698 Pla2g12a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063699.1 MGP_CASTEiJ_G0027033.1 mouse_genomes_project 3 131339057 131357947 + MGP_CASTEiJ_P0063699 Pla2g12a protein_coding protein_coding MGP_CASTEiJ_T0063700.1 MGP_CASTEiJ_G0027033.1 mouse_genomes_project 3 131354792 131358821 + Pla2g12a protein_coding retained_intron MGP_CASTEiJ_T0001120.1 MGP_CASTEiJ_G0001053.1 mouse_genomes_project 3 40343820 40344365 + TEC TEC MGP_CASTEiJ_T0011480.1 MGP_CASTEiJ_G0009659.1 mouse_genomes_project 3 91633231 91634543 + MGP_CASTEiJ_P0011480 Sprr2g polymorphic_pseudogene protein_coding MGP_CASTEiJ_T0060712.1 MGP_CASTEiJ_G0026370.1 mouse_genomes_project 3 50583260 50676485 + MGP_CASTEiJ_P0060712 Foxo1 protein_coding protein_coding MGP_CASTEiJ_T0060677.1 MGP_CASTEiJ_G0026363.1 mouse_genomes_project 3 49646525 49656604 - MGP_CASTEiJ_P0060677 Mgarp protein_coding protein_coding MGP_CASTEiJ_T0060678.1 MGP_CASTEiJ_G0026363.1 mouse_genomes_project 3 49646525 49656794 - MGP_CASTEiJ_P0060678 Mgarp protein_coding protein_coding MGP_CASTEiJ_T0060679.1 MGP_CASTEiJ_G0026363.1 mouse_genomes_project 3 49646525 49656582 - MGP_CASTEiJ_P0060679 Mgarp protein_coding protein_coding MGP_CASTEiJ_T0060680.1 MGP_CASTEiJ_G0026363.1 mouse_genomes_project 3 49648939 49656559 - Mgarp protein_coding retained_intron MGP_CASTEiJ_T0060681.1 MGP_CASTEiJ_G0026363.1 mouse_genomes_project 3 49649382 49656544 - Mgarp protein_coding processed_transcript MGP_CASTEiJ_T0099694.1 MGP_CASTEiJ_G0036607.1 mouse_genomes_project 3 52246698 52246801 + Gm24851 snRNA snRNA MGP_CASTEiJ_T0010238.1 MGP_CASTEiJ_G0008426.1 mouse_genomes_project 3 87956613 87956702 + Mir9-1 miRNA miRNA MGP_CASTEiJ_T0007529.1 MGP_CASTEiJ_G0006174.1 mouse_genomes_project 3 138674253 138677497 - Gm43357 lincRNA lincRNA MGP_CASTEiJ_T0004157.1 MGP_CASTEiJ_G0003659.1 mouse_genomes_project 3 90274680 90276283 - 4930537H20Rik antisense antisense MGP_CASTEiJ_T0007496.1 MGP_CASTEiJ_G0006145.1 mouse_genomes_project 3 123231839 123243353 + Gm40190 lincRNA lincRNA MGP_CASTEiJ_T0013760.1 MGP_CASTEiJ_G0011923.1 mouse_genomes_project 3 99148147 99148381 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063121.1 MGP_CASTEiJ_G0026927.1 mouse_genomes_project 3 108571340 108576505 - MGP_CASTEiJ_P0063121 Cyb561d1 protein_coding protein_coding MGP_CASTEiJ_T0063122.1 MGP_CASTEiJ_G0026927.1 mouse_genomes_project 3 108571424 108576883 - Cyb561d1 protein_coding processed_transcript MGP_CASTEiJ_T0063123.1 MGP_CASTEiJ_G0026927.1 mouse_genomes_project 3 108571424 108576505 - MGP_CASTEiJ_P0063123 Cyb561d1 protein_coding protein_coding MGP_CASTEiJ_T0063124.1 MGP_CASTEiJ_G0026927.1 mouse_genomes_project 3 108573922 108576266 - MGP_CASTEiJ_P0063124 Cyb561d1 protein_coding protein_coding MGP_CASTEiJ_T0013909.1 MGP_CASTEiJ_G0012072.1 mouse_genomes_project 3 149052187 149052715 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013744.1 MGP_CASTEiJ_G0011907.1 mouse_genomes_project 3 94929347 94929699 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001324.1 MGP_CASTEiJ_G0001254.1 mouse_genomes_project 3 153719766 153725740 - TEC TEC MGP_CASTEiJ_T0004276.1 MGP_CASTEiJ_G0003737.1 mouse_genomes_project 3 155349136 155364741 + AI115009 antisense antisense MGP_CASTEiJ_T0098586.1 MGP_CASTEiJ_G0035517.1 mouse_genomes_project 3 7178600 7178709 - Gm24786 rRNA rRNA MGP_CASTEiJ_T0013669.1 MGP_CASTEiJ_G0011832.1 mouse_genomes_project 3 68815066 68815958 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001316.1 MGP_CASTEiJ_G0001246.1 mouse_genomes_project 3 140801631 140803402 - TEC TEC MGP_CASTEiJ_T0007358.1 MGP_CASTEiJ_G0006041.1 mouse_genomes_project 3 51267831 51280763 - lincRNA lincRNA MGP_CASTEiJ_T0060121.1 MGP_CASTEiJ_G0026267.1 mouse_genomes_project 3 17282489 17345962 + MGP_CASTEiJ_P0060121 Hltf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060122.1 MGP_CASTEiJ_G0026267.1 mouse_genomes_project 3 17282489 17347170 + MGP_CASTEiJ_P0060122 Hltf protein_coding protein_coding MGP_CASTEiJ_T0060123.1 MGP_CASTEiJ_G0026267.1 mouse_genomes_project 3 17282498 17335324 + Hltf protein_coding retained_intron MGP_CASTEiJ_T0060124.1 MGP_CASTEiJ_G0026267.1 mouse_genomes_project 3 17282531 17289676 + Hltf protein_coding retained_intron MGP_CASTEiJ_T0060125.1 MGP_CASTEiJ_G0026267.1 mouse_genomes_project 3 17282965 17347156 + MGP_CASTEiJ_P0060125 Hltf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060126.1 MGP_CASTEiJ_G0026267.1 mouse_genomes_project 3 17335290 17347170 + Hltf protein_coding retained_intron MGP_CASTEiJ_T0007390.1 MGP_CASTEiJ_G0006066.1 mouse_genomes_project 3 78537681 78538682 + 6430573P05Rik lincRNA lincRNA MGP_CASTEiJ_T0007391.1 MGP_CASTEiJ_G0006066.1 mouse_genomes_project 3 78537900 78540353 + 6430573P05Rik lincRNA lincRNA MGP_CASTEiJ_T0007392.1 MGP_CASTEiJ_G0006066.1 mouse_genomes_project 3 78538236 78539313 + 6430573P05Rik lincRNA lincRNA MGP_CASTEiJ_T0001084.1 MGP_CASTEiJ_G0001017.1 mouse_genomes_project 3 27967714 27969877 - TEC TEC MGP_CASTEiJ_T0007324.1 MGP_CASTEiJ_G0006017.1 mouse_genomes_project 3 35675914 35772999 + lincRNA lincRNA MGP_CASTEiJ_T0062730.1 MGP_CASTEiJ_G0026836.1 mouse_genomes_project 3 101820065 101824720 + MGP_CASTEiJ_P0062730 Nhlh2 protein_coding protein_coding MGP_CASTEiJ_T0062731.1 MGP_CASTEiJ_G0026836.1 mouse_genomes_project 3 101820135 101825495 + MGP_CASTEiJ_P0062731 Nhlh2 protein_coding protein_coding MGP_CASTEiJ_T0062732.1 MGP_CASTEiJ_G0026836.1 mouse_genomes_project 3 101820144 101824496 + MGP_CASTEiJ_P0062732 Nhlh2 protein_coding protein_coding MGP_CASTEiJ_T0061863.1 MGP_CASTEiJ_G0026607.1 mouse_genomes_project 3 89711750 89722088 + MGP_CASTEiJ_P0061863 Ube2q1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0061864.1 MGP_CASTEiJ_G0026607.1 mouse_genomes_project 3 89711781 89722060 + MGP_CASTEiJ_P0061864 Ube2q1 protein_coding protein_coding MGP_CASTEiJ_T0061865.1 MGP_CASTEiJ_G0026607.1 mouse_genomes_project 3 89711929 89715508 + Ube2q1 protein_coding retained_intron MGP_CASTEiJ_T0062121.1 MGP_CASTEiJ_G0026697.1 mouse_genomes_project 3 92912994 92922551 + MGP_CASTEiJ_P0062121 S100a10 protein_coding protein_coding MGP_CASTEiJ_T0062122.1 MGP_CASTEiJ_G0026697.1 mouse_genomes_project 3 92913077 92919420 + S100a10 protein_coding retained_intron MGP_CASTEiJ_T0062123.1 MGP_CASTEiJ_G0026697.1 mouse_genomes_project 3 92918641 92922358 + MGP_CASTEiJ_P0062123 S100a10 protein_coding protein_coding MGP_CASTEiJ_T0001235.1 MGP_CASTEiJ_G0001166.1 mouse_genomes_project 3 108967641 108969069 + TEC TEC MGP_CASTEiJ_T0001096.1 MGP_CASTEiJ_G0001029.1 mouse_genomes_project 3 31632457 31637774 + TEC TEC MGP_CASTEiJ_T0013580.1 MGP_CASTEiJ_G0011743.1 mouse_genomes_project 3 39261467 39261936 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061112.1 MGP_CASTEiJ_G0026456.1 mouse_genomes_project 3 67832750 67845524 - MGP_CASTEiJ_P0061112 Trim59 protein_coding protein_coding MGP_CASTEiJ_T0061113.1 MGP_CASTEiJ_G0026456.1 mouse_genomes_project 3 67832752 67845564 - MGP_CASTEiJ_P0061113 Trim59 protein_coding protein_coding MGP_CASTEiJ_T0061114.1 MGP_CASTEiJ_G0026456.1 mouse_genomes_project 3 67844338 67845524 - Trim59 protein_coding retained_intron MGP_CASTEiJ_T0061115.1 MGP_CASTEiJ_G0026456.1 mouse_genomes_project 3 67844565 67845532 - Trim59 protein_coding processed_transcript MGP_CASTEiJ_T0004075.1 MGP_CASTEiJ_G0003600.1 mouse_genomes_project 3 16430344 16443553 + Gm16093 antisense antisense MGP_CASTEiJ_T0004087.1 MGP_CASTEiJ_G0003608.1 mouse_genomes_project 3 30043621 30044162 - Gm37592 antisense antisense MGP_CASTEiJ_T0062049.1 MGP_CASTEiJ_G0026641.1 mouse_genomes_project 3 90722770 90727068 - MGP_CASTEiJ_P0062049 S100a9 protein_coding protein_coding MGP_CASTEiJ_T0062050.1 MGP_CASTEiJ_G0026641.1 mouse_genomes_project 3 90722770 90727078 - MGP_CASTEiJ_P0062050 S100a9 protein_coding protein_coding MGP_CASTEiJ_T0064199.1 MGP_CASTEiJ_G0027131.1 mouse_genomes_project 3 148998839 149004969 - MGP_CASTEiJ_P0064199 4930503B20Rik protein_coding protein_coding MGP_CASTEiJ_T0064204.1 MGP_CASTEiJ_G0027131.1 mouse_genomes_project 3 148999917 149001958 - 4930503B20Rik protein_coding processed_transcript MGP_CASTEiJ_T0064205.1 MGP_CASTEiJ_G0027131.1 mouse_genomes_project 3 149003217 149004967 - MGP_CASTEiJ_P0064205 4930503B20Rik protein_coding protein_coding MGP_CASTEiJ_T0100995.1 MGP_CASTEiJ_G0037908.1 mouse_genomes_project 3 124521858 124521988 - Snora24 snoRNA snoRNA MGP_CASTEiJ_T0099722.1 MGP_CASTEiJ_G0036635.1 mouse_genomes_project 3 89916864 89917044 - Gm24046 snRNA snRNA MGP_CASTEiJ_T0001343.1 MGP_CASTEiJ_G0001273.1 mouse_genomes_project 3 159972388 159973947 + TEC TEC MGP_CASTEiJ_T0063767.1 MGP_CASTEiJ_G0027048.1 mouse_genomes_project 3 134208747 134233324 - MGP_CASTEiJ_P0063767 Aimp1 protein_coding protein_coding MGP_CASTEiJ_T0063768.1 MGP_CASTEiJ_G0027048.1 mouse_genomes_project 3 134221218 134224210 - Aimp1 protein_coding retained_intron MGP_CASTEiJ_T0063769.1 MGP_CASTEiJ_G0027048.1 mouse_genomes_project 3 134221481 134226662 - Aimp1 protein_coding retained_intron MGP_CASTEiJ_T0063770.1 MGP_CASTEiJ_G0027048.1 mouse_genomes_project 3 134223439 134233810 - MGP_CASTEiJ_P0063770 Aimp1 protein_coding protein_coding MGP_CASTEiJ_T0063771.1 MGP_CASTEiJ_G0027048.1 mouse_genomes_project 3 134223529 134233562 - MGP_CASTEiJ_P0063771 Aimp1 protein_coding protein_coding MGP_CASTEiJ_T0063772.1 MGP_CASTEiJ_G0027048.1 mouse_genomes_project 3 134223545 134233277 - MGP_CASTEiJ_P0063772 Aimp1 protein_coding protein_coding MGP_CASTEiJ_T0063773.1 MGP_CASTEiJ_G0027048.1 mouse_genomes_project 3 134224240 134233564 - MGP_CASTEiJ_P0063773 Aimp1 protein_coding protein_coding MGP_CASTEiJ_T0063774.1 MGP_CASTEiJ_G0027048.1 mouse_genomes_project 3 134229299 134233276 - Aimp1 protein_coding retained_intron MGP_CASTEiJ_T0098593.1 MGP_CASTEiJ_G0035524.1 mouse_genomes_project 3 96035613 96035730 + Gm28001 rRNA rRNA MGP_CASTEiJ_T0013729.1 MGP_CASTEiJ_G0011892.1 mouse_genomes_project 3 91743609 91744280 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004284.1 MGP_CASTEiJ_G0003744.1 mouse_genomes_project 3 160442562 160449122 - Gm43159 antisense antisense MGP_CASTEiJ_T0011211.1 MGP_CASTEiJ_G0009399.1 mouse_genomes_project 3 78062085 78062428 + Gm24749 misc_RNA misc_RNA MGP_CASTEiJ_T0007398.1 MGP_CASTEiJ_G0006072.1 mouse_genomes_project 3 81205389 81213115 + lincRNA lincRNA MGP_CASTEiJ_T0007436.1 MGP_CASTEiJ_G0006097.1 mouse_genomes_project 3 95838061 95844134 + lincRNA lincRNA MGP_CASTEiJ_T0060109.1 MGP_CASTEiJ_G0026266.1 mouse_genomes_project 3 17224687 17265179 - Hps3 protein_coding retained_intron MGP_CASTEiJ_T0060110.1 MGP_CASTEiJ_G0026266.1 mouse_genomes_project 3 17224687 17265214 - MGP_CASTEiJ_P0060110 Hps3 protein_coding protein_coding MGP_CASTEiJ_T0060111.1 MGP_CASTEiJ_G0026266.1 mouse_genomes_project 3 17224766 17242733 - Hps3 protein_coding processed_transcript MGP_CASTEiJ_T0060112.1 MGP_CASTEiJ_G0026266.1 mouse_genomes_project 3 17224769 17265201 - MGP_CASTEiJ_P0060112 Hps3 protein_coding protein_coding MGP_CASTEiJ_T0060113.1 MGP_CASTEiJ_G0026266.1 mouse_genomes_project 3 17231439 17241536 - Hps3 protein_coding processed_transcript MGP_CASTEiJ_T0060114.1 MGP_CASTEiJ_G0026266.1 mouse_genomes_project 3 17239679 17265201 - Hps3 protein_coding retained_intron MGP_CASTEiJ_T0060115.1 MGP_CASTEiJ_G0026266.1 mouse_genomes_project 3 17241128 17265193 - Hps3 protein_coding retained_intron MGP_CASTEiJ_T0060116.1 MGP_CASTEiJ_G0026266.1 mouse_genomes_project 3 17243562 17265201 - Hps3 protein_coding retained_intron MGP_CASTEiJ_T0060117.1 MGP_CASTEiJ_G0026266.1 mouse_genomes_project 3 17243814 17265195 - Hps3 protein_coding processed_transcript MGP_CASTEiJ_T0060118.1 MGP_CASTEiJ_G0026266.1 mouse_genomes_project 3 17244957 17265193 - Hps3 protein_coding retained_intron MGP_CASTEiJ_T0060119.1 MGP_CASTEiJ_G0026266.1 mouse_genomes_project 3 17248175 17265209 - MGP_CASTEiJ_P0060119 Hps3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0060120.1 MGP_CASTEiJ_G0026266.1 mouse_genomes_project 3 17264733 17265201 - Hps3 protein_coding processed_transcript MGP_CASTEiJ_T0007523.1 MGP_CASTEiJ_G0006168.1 mouse_genomes_project 3 135419257 135421874 - Gm30484 lincRNA lincRNA MGP_CASTEiJ_T0061808.1 MGP_CASTEiJ_G0026594.1 mouse_genomes_project 3 89248858 89263954 - MGP_CASTEiJ_P0061808 Dcst1 protein_coding protein_coding MGP_CASTEiJ_T0061809.1 MGP_CASTEiJ_G0026594.1 mouse_genomes_project 3 89249662 89254196 - Dcst1 protein_coding retained_intron MGP_CASTEiJ_T0061810.1 MGP_CASTEiJ_G0026594.1 mouse_genomes_project 3 89251369 89254166 - Dcst1 protein_coding processed_transcript MGP_CASTEiJ_T0061811.1 MGP_CASTEiJ_G0026594.1 mouse_genomes_project 3 89252277 89253548 - Dcst1 protein_coding retained_intron MGP_CASTEiJ_T0061812.1 MGP_CASTEiJ_G0026594.1 mouse_genomes_project 3 89256157 89262962 - Dcst1 protein_coding retained_intron MGP_CASTEiJ_T0061813.1 MGP_CASTEiJ_G0026594.1 mouse_genomes_project 3 89256242 89262963 - Dcst1 protein_coding retained_intron MGP_CASTEiJ_T0059966.1 MGP_CASTEiJ_G0026225.1 mouse_genomes_project 3 6058930 6198046 - MGP_CASTEiJ_P0059966 Mrps28 protein_coding protein_coding MGP_CASTEiJ_T0101594.1 MGP_CASTEiJ_G0038457.1 mouse_genomes_project 3 123761146 123761440 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0064049.1 MGP_CASTEiJ_G0027099.1 mouse_genomes_project 3 144618783 144698424 + MGP_CASTEiJ_P0064049 Gbp2b protein_coding protein_coding MGP_CASTEiJ_T0064050.1 MGP_CASTEiJ_G0027099.1 mouse_genomes_project 3 144671178 144698432 + MGP_CASTEiJ_P0064050 Gbp2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0001327.1 MGP_CASTEiJ_G0001257.1 mouse_genomes_project 3 154921581 154924370 - TEC TEC MGP_CASTEiJ_T0060974.1 MGP_CASTEiJ_G0026429.1 mouse_genomes_project 3 61974527 62066384 + MGP_CASTEiJ_P0060974 Mme protein_coding protein_coding MGP_CASTEiJ_T0060975.1 MGP_CASTEiJ_G0026429.1 mouse_genomes_project 3 62032899 62066753 + MGP_CASTEiJ_P0060975 Mme protein_coding protein_coding MGP_CASTEiJ_T0060976.1 MGP_CASTEiJ_G0026429.1 mouse_genomes_project 3 62033081 62066745 + MGP_CASTEiJ_P0060976 Mme protein_coding protein_coding MGP_CASTEiJ_T0060977.1 MGP_CASTEiJ_G0026429.1 mouse_genomes_project 3 62033194 62121239 + MGP_CASTEiJ_P0060977 Mme protein_coding protein_coding MGP_CASTEiJ_T0060978.1 MGP_CASTEiJ_G0026429.1 mouse_genomes_project 3 62033505 62126173 + MGP_CASTEiJ_P0060978 Mme protein_coding protein_coding MGP_CASTEiJ_T0060979.1 MGP_CASTEiJ_G0026429.1 mouse_genomes_project 3 62033728 62121766 + MGP_CASTEiJ_P0060979 Mme protein_coding protein_coding MGP_CASTEiJ_T0060980.1 MGP_CASTEiJ_G0026429.1 mouse_genomes_project 3 62034684 62066625 + MGP_CASTEiJ_P0060980 Mme protein_coding protein_coding MGP_CASTEiJ_T0060981.1 MGP_CASTEiJ_G0026429.1 mouse_genomes_project 3 62038743 62086579 + Mme protein_coding retained_intron MGP_CASTEiJ_T0001099.1 MGP_CASTEiJ_G0001032.1 mouse_genomes_project 3 32276906 32277025 + TEC TEC MGP_CASTEiJ_T0061266.1 MGP_CASTEiJ_G0026492.1 mouse_genomes_project 3 81992191 82005148 - MGP_CASTEiJ_P0061266 Npy2r protein_coding protein_coding MGP_CASTEiJ_T0061267.1 MGP_CASTEiJ_G0026492.1 mouse_genomes_project 3 81995966 82005180 - MGP_CASTEiJ_P0061267 Npy2r protein_coding protein_coding MGP_CASTEiJ_T0061268.1 MGP_CASTEiJ_G0026492.1 mouse_genomes_project 3 81997051 82005056 - MGP_CASTEiJ_P0061268 Npy2r protein_coding protein_coding MGP_CASTEiJ_T0061269.1 MGP_CASTEiJ_G0026492.1 mouse_genomes_project 3 81997051 82005056 - MGP_CASTEiJ_P0061269 Npy2r protein_coding protein_coding MGP_CASTEiJ_T0060316.1 MGP_CASTEiJ_G0026305.1 mouse_genomes_project 3 29997918 30024198 - MGP_CASTEiJ_P0060316 Kcnmb3 protein_coding protein_coding MGP_CASTEiJ_T0004245.1 MGP_CASTEiJ_G0003716.1 mouse_genomes_project 3 131193479 131198382 + Gm42650 antisense antisense MGP_CASTEiJ_T0060664.1 MGP_CASTEiJ_G0026362.1 mouse_genomes_project 3 49491806 49586802 - MGP_CASTEiJ_P0060664 Elf2 protein_coding protein_coding MGP_CASTEiJ_T0060665.1 MGP_CASTEiJ_G0026362.1 mouse_genomes_project 3 49494283 49570297 - MGP_CASTEiJ_P0060665 Elf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060666.1 MGP_CASTEiJ_G0026362.1 mouse_genomes_project 3 49494284 49586783 - MGP_CASTEiJ_P0060666 Elf2 protein_coding protein_coding MGP_CASTEiJ_T0060667.1 MGP_CASTEiJ_G0026362.1 mouse_genomes_project 3 49494716 49516360 - MGP_CASTEiJ_P0060667 Elf2 protein_coding protein_coding MGP_CASTEiJ_T0060668.1 MGP_CASTEiJ_G0026362.1 mouse_genomes_project 3 49494718 49516520 - MGP_CASTEiJ_P0060668 Elf2 protein_coding protein_coding MGP_CASTEiJ_T0060669.1 MGP_CASTEiJ_G0026362.1 mouse_genomes_project 3 49494718 49516459 - MGP_CASTEiJ_P0060669 Elf2 protein_coding protein_coding MGP_CASTEiJ_T0060670.1 MGP_CASTEiJ_G0026362.1 mouse_genomes_project 3 49494738 49570255 - MGP_CASTEiJ_P0060670 Elf2 protein_coding protein_coding MGP_CASTEiJ_T0060671.1 MGP_CASTEiJ_G0026362.1 mouse_genomes_project 3 49497734 49499289 - Elf2 protein_coding retained_intron MGP_CASTEiJ_T0060672.1 MGP_CASTEiJ_G0026362.1 mouse_genomes_project 3 49504031 49586797 - MGP_CASTEiJ_P0060672 Elf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060673.1 MGP_CASTEiJ_G0026362.1 mouse_genomes_project 3 49504031 49516313 - MGP_CASTEiJ_P0060673 Elf2 protein_coding protein_coding MGP_CASTEiJ_T0060674.1 MGP_CASTEiJ_G0026362.1 mouse_genomes_project 3 49504047 49586700 - Elf2 protein_coding processed_transcript MGP_CASTEiJ_T0060675.1 MGP_CASTEiJ_G0026362.1 mouse_genomes_project 3 49504047 49516369 - MGP_CASTEiJ_P0060675 Elf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060676.1 MGP_CASTEiJ_G0026362.1 mouse_genomes_project 3 49504211 49516389 - MGP_CASTEiJ_P0060676 Elf2 protein_coding protein_coding MGP_CASTEiJ_T0099051.1 MGP_CASTEiJ_G0035965.1 mouse_genomes_project 3 147664702 147665742 + D530037P16Rik sense_overlapping sense_overlapping MGP_CASTEiJ_T0098759.1 MGP_CASTEiJ_G0035690.1 mouse_genomes_project 3 88479459 88479586 + Gm25820 scaRNA scaRNA MGP_CASTEiJ_T0004092.1 MGP_CASTEiJ_G0003612.1 mouse_genomes_project 3 31371338 31372029 + Gm43140 antisense antisense MGP_CASTEiJ_T0063140.1 MGP_CASTEiJ_G0026933.1 mouse_genomes_project 3 108770913 108776198 + MGP_CASTEiJ_P0063140 Psrc1 protein_coding protein_coding MGP_CASTEiJ_T0063141.1 MGP_CASTEiJ_G0026933.1 mouse_genomes_project 3 108770925 108772483 + Psrc1 protein_coding processed_transcript MGP_CASTEiJ_T0063142.1 MGP_CASTEiJ_G0026933.1 mouse_genomes_project 3 108770926 108774617 + Psrc1 protein_coding processed_transcript MGP_CASTEiJ_T0063143.1 MGP_CASTEiJ_G0026933.1 mouse_genomes_project 3 108770933 108776250 + MGP_CASTEiJ_P0063143 Psrc1 protein_coding protein_coding MGP_CASTEiJ_T0063144.1 MGP_CASTEiJ_G0026933.1 mouse_genomes_project 3 108770953 108774398 + Psrc1 protein_coding processed_transcript MGP_CASTEiJ_T0063145.1 MGP_CASTEiJ_G0026933.1 mouse_genomes_project 3 108770990 108772484 + MGP_CASTEiJ_P0063145 Psrc1 protein_coding protein_coding MGP_CASTEiJ_T0063146.1 MGP_CASTEiJ_G0026933.1 mouse_genomes_project 3 108771011 108774637 + Psrc1 protein_coding processed_transcript MGP_CASTEiJ_T0063147.1 MGP_CASTEiJ_G0026933.1 mouse_genomes_project 3 108771468 108773103 + Psrc1 protein_coding retained_intron MGP_CASTEiJ_T0063148.1 MGP_CASTEiJ_G0026933.1 mouse_genomes_project 3 108771928 108774888 + Psrc1 protein_coding retained_intron MGP_CASTEiJ_T0063149.1 MGP_CASTEiJ_G0026933.1 mouse_genomes_project 3 108771931 108774719 + Psrc1 protein_coding retained_intron MGP_CASTEiJ_T0063150.1 MGP_CASTEiJ_G0026933.1 mouse_genomes_project 3 108773223 108774727 + Psrc1 protein_coding processed_transcript MGP_CASTEiJ_T0061940.1 MGP_CASTEiJ_G0026616.1 mouse_genomes_project 3 90185350 90186509 - MGP_CASTEiJ_P0061940 Rps27rt protein_coding protein_coding MGP_CASTEiJ_T0061941.1 MGP_CASTEiJ_G0026616.1 mouse_genomes_project 3 90185491 90186850 - MGP_CASTEiJ_P0061941 Rps27rt protein_coding protein_coding MGP_CASTEiJ_T0061942.1 MGP_CASTEiJ_G0026616.1 mouse_genomes_project 3 90185495 90186841 - Rps27rt protein_coding retained_intron MGP_CASTEiJ_T0061943.1 MGP_CASTEiJ_G0026616.1 mouse_genomes_project 3 90185495 90186842 - Rps27rt protein_coding retained_intron MGP_CASTEiJ_T0061944.1 MGP_CASTEiJ_G0026616.1 mouse_genomes_project 3 90185499 90186831 - Rps27rt protein_coding retained_intron MGP_CASTEiJ_T0061945.1 MGP_CASTEiJ_G0026616.1 mouse_genomes_project 3 90185499 90186856 - MGP_CASTEiJ_P0061945 Rps27rt protein_coding protein_coding MGP_CASTEiJ_T0061946.1 MGP_CASTEiJ_G0026616.1 mouse_genomes_project 3 90185499 90186859 - MGP_CASTEiJ_P0061946 Rps27rt protein_coding protein_coding MGP_CASTEiJ_T0061947.1 MGP_CASTEiJ_G0026616.1 mouse_genomes_project 3 90185655 90186854 - Rps27rt protein_coding retained_intron MGP_CASTEiJ_T0061948.1 MGP_CASTEiJ_G0026616.1 mouse_genomes_project 3 90186266 90186853 - Rps27rt protein_coding retained_intron MGP_CASTEiJ_T0060404.1 MGP_CASTEiJ_G0026317.1 mouse_genomes_project 3 31616231 31643103 - MGP_CASTEiJ_P0060404 Dnajc19 protein_coding protein_coding MGP_CASTEiJ_T0060405.1 MGP_CASTEiJ_G0026317.1 mouse_genomes_project 3 31639052 31643112 - MGP_CASTEiJ_P0060405 Dnajc19 protein_coding protein_coding MGP_CASTEiJ_T0060406.1 MGP_CASTEiJ_G0026317.1 mouse_genomes_project 3 31639101 31643101 - MGP_CASTEiJ_P0060406 Dnajc19 protein_coding protein_coding MGP_CASTEiJ_T0060407.1 MGP_CASTEiJ_G0026317.1 mouse_genomes_project 3 31639131 31641971 - Dnajc19 protein_coding retained_intron MGP_CASTEiJ_T0060408.1 MGP_CASTEiJ_G0026317.1 mouse_genomes_project 3 31639211 31643053 - MGP_CASTEiJ_P0060408 Dnajc19 protein_coding protein_coding MGP_CASTEiJ_T0013631.1 MGP_CASTEiJ_G0011794.1 mouse_genomes_project 3 58057865 58059677 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013878.1 MGP_CASTEiJ_G0012041.1 mouse_genomes_project 3 137736679 137738810 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062878.1 MGP_CASTEiJ_G0026863.1 mouse_genomes_project 3 103935760 104150440 - MGP_CASTEiJ_P0062878 Magi3 protein_coding protein_coding MGP_CASTEiJ_T0062879.1 MGP_CASTEiJ_G0026863.1 mouse_genomes_project 3 103936124 104150169 - MGP_CASTEiJ_P0062879 Magi3 protein_coding protein_coding MGP_CASTEiJ_T0062880.1 MGP_CASTEiJ_G0026863.1 mouse_genomes_project 3 103938966 104150304 - MGP_CASTEiJ_P0062880 Magi3 protein_coding protein_coding MGP_CASTEiJ_T0062881.1 MGP_CASTEiJ_G0026863.1 mouse_genomes_project 3 103986459 103988264 - Magi3 protein_coding retained_intron MGP_CASTEiJ_T0001194.1 MGP_CASTEiJ_G0001125.1 mouse_genomes_project 3 75035031 75037212 + TEC TEC MGP_CASTEiJ_T0007279.1 MGP_CASTEiJ_G0005982.1 mouse_genomes_project 3 15025403 15035340 + Mir124-2hg lincRNA lincRNA MGP_CASTEiJ_T0007280.1 MGP_CASTEiJ_G0005982.1 mouse_genomes_project 3 15025439 15034981 + Mir124-2hg lincRNA lincRNA MGP_CASTEiJ_T0007281.1 MGP_CASTEiJ_G0005982.1 mouse_genomes_project 3 15029365 15030851 + Mir124-2hg lincRNA lincRNA MGP_CASTEiJ_T0007282.1 MGP_CASTEiJ_G0005982.1 mouse_genomes_project 3 15029373 15035037 + Mir124-2hg lincRNA lincRNA MGP_CASTEiJ_T0007283.1 MGP_CASTEiJ_G0005982.1 mouse_genomes_project 3 15029390 15034950 + Mir124-2hg lincRNA lincRNA MGP_CASTEiJ_T0007284.1 MGP_CASTEiJ_G0005982.1 mouse_genomes_project 3 15030341 15045297 + Mir124-2hg lincRNA lincRNA MGP_CASTEiJ_T0007285.1 MGP_CASTEiJ_G0005982.1 mouse_genomes_project 3 15031189 15035037 + Mir124-2hg lincRNA lincRNA MGP_CASTEiJ_T0004148.1 MGP_CASTEiJ_G0003653.1 mouse_genomes_project 3 88621255 88667905 - antisense antisense MGP_CASTEiJ_T0010247.1 MGP_CASTEiJ_G0008435.1 mouse_genomes_project 3 92770896 92771005 - Gm22752 miRNA miRNA MGP_CASTEiJ_T0001281.1 MGP_CASTEiJ_G0001212.1 mouse_genomes_project 3 128407364 128410566 - TEC TEC MGP_CASTEiJ_T0013618.1 MGP_CASTEiJ_G0011781.1 mouse_genomes_project 3 55344353 55344824 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060075.1 MGP_CASTEiJ_G0026260.1 mouse_genomes_project 3 16425671 16514783 - MGP_CASTEiJ_P0060075 Pde7a protein_coding protein_coding MGP_CASTEiJ_T0060076.1 MGP_CASTEiJ_G0026260.1 mouse_genomes_project 3 16427244 16469777 - MGP_CASTEiJ_P0060076 Pde7a protein_coding protein_coding MGP_CASTEiJ_T0060077.1 MGP_CASTEiJ_G0026260.1 mouse_genomes_project 3 16429949 16432610 - Pde7a protein_coding retained_intron MGP_CASTEiJ_T0060078.1 MGP_CASTEiJ_G0026260.1 mouse_genomes_project 3 16430286 16436126 - Pde7a protein_coding processed_transcript MGP_CASTEiJ_T0060079.1 MGP_CASTEiJ_G0026260.1 mouse_genomes_project 3 16432870 16462181 - MGP_CASTEiJ_P0060079 Pde7a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060080.1 MGP_CASTEiJ_G0026260.1 mouse_genomes_project 3 16432942 16439059 - Pde7a protein_coding retained_intron MGP_CASTEiJ_T0060081.1 MGP_CASTEiJ_G0026260.1 mouse_genomes_project 3 16436401 16514514 - MGP_CASTEiJ_P0060081 Pde7a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060082.1 MGP_CASTEiJ_G0026260.1 mouse_genomes_project 3 16439010 16469734 - MGP_CASTEiJ_P0060082 Pde7a protein_coding protein_coding MGP_CASTEiJ_T0060083.1 MGP_CASTEiJ_G0026260.1 mouse_genomes_project 3 16458636 16514766 - Pde7a protein_coding retained_intron MGP_CASTEiJ_T0060084.1 MGP_CASTEiJ_G0026260.1 mouse_genomes_project 3 16458734 16514365 - Pde7a protein_coding processed_transcript MGP_CASTEiJ_T0061323.1 MGP_CASTEiJ_G0026506.1 mouse_genomes_project 3 83969803 84008480 - MGP_CASTEiJ_P0061323 Fhdc1 protein_coding protein_coding MGP_CASTEiJ_T0061324.1 MGP_CASTEiJ_G0026506.1 mouse_genomes_project 3 83971610 84007526 - MGP_CASTEiJ_P0061324 Fhdc1 protein_coding protein_coding MGP_CASTEiJ_T0061325.1 MGP_CASTEiJ_G0026506.1 mouse_genomes_project 3 83971683 84008444 - MGP_CASTEiJ_P0061325 Fhdc1 protein_coding protein_coding MGP_CASTEiJ_T0061326.1 MGP_CASTEiJ_G0026506.1 mouse_genomes_project 3 83976359 83981286 - Fhdc1 protein_coding retained_intron MGP_CASTEiJ_T0061327.1 MGP_CASTEiJ_G0026506.1 mouse_genomes_project 3 84002533 84007017 - Fhdc1 protein_coding processed_transcript MGP_CASTEiJ_T0063432.1 MGP_CASTEiJ_G0026988.1 mouse_genomes_project 3 122342660 122344058 - Slc44a3 protein_coding processed_transcript MGP_CASTEiJ_T0063433.1 MGP_CASTEiJ_G0026988.1 mouse_genomes_project 3 122342660 122417572 - MGP_CASTEiJ_P0063433 Slc44a3 protein_coding protein_coding MGP_CASTEiJ_T0063434.1 MGP_CASTEiJ_G0026988.1 mouse_genomes_project 3 122406735 122412308 - Slc44a3 protein_coding processed_transcript MGP_CASTEiJ_T0001124.1 MGP_CASTEiJ_G0001057.1 mouse_genomes_project 3 43366187 43370244 + TEC TEC MGP_CASTEiJ_T0063437.1 MGP_CASTEiJ_G0026990.1 mouse_genomes_project 3 122620635 122633742 + MGP_CASTEiJ_P0063437 F3 protein_coding protein_coding MGP_CASTEiJ_T0063438.1 MGP_CASTEiJ_G0026990.1 mouse_genomes_project 3 122620668 122626635 + F3 protein_coding processed_transcript MGP_CASTEiJ_T0063439.1 MGP_CASTEiJ_G0026990.1 mouse_genomes_project 3 122626422 122629363 + F3 protein_coding retained_intron MGP_CASTEiJ_T0063440.1 MGP_CASTEiJ_G0026990.1 mouse_genomes_project 3 122626646 122633742 + MGP_CASTEiJ_P0063440 F3 protein_coding protein_coding MGP_CASTEiJ_T0062418.1 MGP_CASTEiJ_G0026748.1 mouse_genomes_project 3 95261985 95329031 - MGP_CASTEiJ_P0062418 Rprd2 protein_coding protein_coding MGP_CASTEiJ_T0062419.1 MGP_CASTEiJ_G0026748.1 mouse_genomes_project 3 95262445 95329038 - MGP_CASTEiJ_P0062419 Rprd2 protein_coding protein_coding MGP_CASTEiJ_T0062420.1 MGP_CASTEiJ_G0026748.1 mouse_genomes_project 3 95275520 95281697 - Rprd2 protein_coding retained_intron MGP_CASTEiJ_T0062421.1 MGP_CASTEiJ_G0026748.1 mouse_genomes_project 3 95277217 95329058 - MGP_CASTEiJ_P0062421 Rprd2 protein_coding protein_coding MGP_CASTEiJ_T0062422.1 MGP_CASTEiJ_G0026748.1 mouse_genomes_project 3 95278030 95281675 - Rprd2 protein_coding processed_transcript MGP_CASTEiJ_T0062423.1 MGP_CASTEiJ_G0026748.1 mouse_genomes_project 3 95290166 95329134 - Rprd2 protein_coding retained_intron MGP_CASTEiJ_T0060815.1 MGP_CASTEiJ_G0026391.1 mouse_genomes_project 3 53738557 54045231 + MGP_CASTEiJ_P0060815 Dclk1 protein_coding protein_coding MGP_CASTEiJ_T0060816.1 MGP_CASTEiJ_G0026391.1 mouse_genomes_project 3 53738719 54045227 + MGP_CASTEiJ_P0060816 Dclk1 protein_coding protein_coding MGP_CASTEiJ_T0060817.1 MGP_CASTEiJ_G0026391.1 mouse_genomes_project 3 53738719 53975441 + MGP_CASTEiJ_P0060817 Dclk1 protein_coding protein_coding MGP_CASTEiJ_T0060818.1 MGP_CASTEiJ_G0026391.1 mouse_genomes_project 3 53743299 53753689 + MGP_CASTEiJ_P0060818 Dclk1 protein_coding protein_coding MGP_CASTEiJ_T0060819.1 MGP_CASTEiJ_G0026391.1 mouse_genomes_project 3 53743507 53753659 + Dclk1 protein_coding retained_intron MGP_CASTEiJ_T0060820.1 MGP_CASTEiJ_G0026391.1 mouse_genomes_project 3 53851387 53982048 + Dclk1 protein_coding processed_transcript MGP_CASTEiJ_T0060821.1 MGP_CASTEiJ_G0026391.1 mouse_genomes_project 3 53951087 53984680 + Dclk1 protein_coding retained_intron MGP_CASTEiJ_T0060822.1 MGP_CASTEiJ_G0026391.1 mouse_genomes_project 3 53965875 53975443 + MGP_CASTEiJ_P0060822 Dclk1 protein_coding protein_coding MGP_CASTEiJ_T0060823.1 MGP_CASTEiJ_G0026391.1 mouse_genomes_project 3 53965905 54045227 + MGP_CASTEiJ_P0060823 Dclk1 protein_coding protein_coding MGP_CASTEiJ_T0060824.1 MGP_CASTEiJ_G0026391.1 mouse_genomes_project 3 53966046 54042699 + MGP_CASTEiJ_P0060824 Dclk1 protein_coding protein_coding MGP_CASTEiJ_T0060825.1 MGP_CASTEiJ_G0026391.1 mouse_genomes_project 3 53966063 54023274 + MGP_CASTEiJ_P0060825 Dclk1 protein_coding protein_coding MGP_CASTEiJ_T0060826.1 MGP_CASTEiJ_G0026391.1 mouse_genomes_project 3 53966063 54041284 + MGP_CASTEiJ_P0060826 Dclk1 protein_coding protein_coding MGP_CASTEiJ_T0060827.1 MGP_CASTEiJ_G0026391.1 mouse_genomes_project 3 53966063 54042698 + MGP_CASTEiJ_P0060827 Dclk1 protein_coding protein_coding MGP_CASTEiJ_T0060828.1 MGP_CASTEiJ_G0026391.1 mouse_genomes_project 3 53966119 54028412 + MGP_CASTEiJ_P0060828 Dclk1 protein_coding protein_coding MGP_CASTEiJ_T0060830.1 MGP_CASTEiJ_G0026391.1 mouse_genomes_project 3 54034019 54040460 + Dclk1 protein_coding processed_transcript MGP_CASTEiJ_T0059933.1 MGP_CASTEiJ_G0026216.1 mouse_genomes_project 3 1316050 1318045 - MGP_CASTEiJ_P0059933 Hnrnph2 protein_coding protein_coding MGP_CASTEiJ_T0098898.1 MGP_CASTEiJ_G0035822.1 mouse_genomes_project 3 101956279 101959160 + 4632404M16Rik sense_intronic sense_intronic MGP_CASTEiJ_T0062352.1 MGP_CASTEiJ_G0026738.1 mouse_genomes_project 3 94898270 94958843 + Arnt protein_coding retained_intron MGP_CASTEiJ_T0062353.1 MGP_CASTEiJ_G0026738.1 mouse_genomes_project 3 94898270 94962784 + MGP_CASTEiJ_P0062353 Arnt protein_coding protein_coding MGP_CASTEiJ_T0062354.1 MGP_CASTEiJ_G0026738.1 mouse_genomes_project 3 94898272 94964478 + MGP_CASTEiJ_P0062354 Arnt protein_coding protein_coding MGP_CASTEiJ_T0062355.1 MGP_CASTEiJ_G0026738.1 mouse_genomes_project 3 94898286 94964475 + MGP_CASTEiJ_P0062355 Arnt protein_coding protein_coding MGP_CASTEiJ_T0062356.1 MGP_CASTEiJ_G0026738.1 mouse_genomes_project 3 94898310 94929035 + MGP_CASTEiJ_P0062356 Arnt protein_coding protein_coding MGP_CASTEiJ_T0062357.1 MGP_CASTEiJ_G0026738.1 mouse_genomes_project 3 94898310 94962788 + MGP_CASTEiJ_P0062357 Arnt protein_coding protein_coding MGP_CASTEiJ_T0062358.1 MGP_CASTEiJ_G0026738.1 mouse_genomes_project 3 94898401 94959907 + Arnt protein_coding retained_intron MGP_CASTEiJ_T0062359.1 MGP_CASTEiJ_G0026738.1 mouse_genomes_project 3 94934473 94962784 + Arnt protein_coding retained_intron MGP_CASTEiJ_T0062360.1 MGP_CASTEiJ_G0026738.1 mouse_genomes_project 3 94940183 94946292 + Arnt protein_coding retained_intron MGP_CASTEiJ_T0062361.1 MGP_CASTEiJ_G0026738.1 mouse_genomes_project 3 94942168 94953313 + MGP_CASTEiJ_P0062361 Arnt protein_coding protein_coding MGP_CASTEiJ_T0062362.1 MGP_CASTEiJ_G0026738.1 mouse_genomes_project 3 94955413 94956415 + Arnt protein_coding retained_intron MGP_CASTEiJ_T0098913.1 MGP_CASTEiJ_G0035837.1 mouse_genomes_project 3 104078709 104080626 - Gm43258 sense_intronic sense_intronic MGP_CASTEiJ_T0001188.1 MGP_CASTEiJ_G0001119.1 mouse_genomes_project 3 67922991 67925964 - TEC TEC MGP_CASTEiJ_T0098877.1 MGP_CASTEiJ_G0035802.1 mouse_genomes_project 3 85144179 85163951 - Gm15535 sense_intronic sense_intronic MGP_CASTEiJ_T0098878.1 MGP_CASTEiJ_G0035802.1 mouse_genomes_project 3 85147173 85163860 - Gm15535 sense_intronic sense_intronic MGP_CASTEiJ_T0064022.1 MGP_CASTEiJ_G0027094.1 mouse_genomes_project 3 143799810 143830753 - MGP_CASTEiJ_P0064022 Bmpr1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0064023.1 MGP_CASTEiJ_G0027094.1 mouse_genomes_project 3 143802600 143848794 - MGP_CASTEiJ_P0064023 Bmpr1b protein_coding protein_coding MGP_CASTEiJ_T0064024.1 MGP_CASTEiJ_G0027094.1 mouse_genomes_project 3 143805805 143900363 - MGP_CASTEiJ_P0064024 Bmpr1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063222.1 MGP_CASTEiJ_G0026947.1 mouse_genomes_project 3 109378863 109379434 + Henmt1 protein_coding processed_transcript MGP_CASTEiJ_T0063224.1 MGP_CASTEiJ_G0026947.1 mouse_genomes_project 3 109379048 109381711 + MGP_CASTEiJ_P0063224 Henmt1 protein_coding protein_coding MGP_CASTEiJ_T0063225.1 MGP_CASTEiJ_G0026947.1 mouse_genomes_project 3 109379073 109395239 + MGP_CASTEiJ_P0063225 Henmt1 protein_coding protein_coding MGP_CASTEiJ_T0063226.1 MGP_CASTEiJ_G0026947.1 mouse_genomes_project 3 109379103 109393811 + MGP_CASTEiJ_P0063226 Henmt1 protein_coding protein_coding MGP_CASTEiJ_T0063227.1 MGP_CASTEiJ_G0026947.1 mouse_genomes_project 3 109379482 109395337 + MGP_CASTEiJ_P0063227 Henmt1 protein_coding protein_coding MGP_CASTEiJ_T0063228.1 MGP_CASTEiJ_G0026947.1 mouse_genomes_project 3 109380293 109394781 + MGP_CASTEiJ_P0063228 Henmt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063229.1 MGP_CASTEiJ_G0026947.1 mouse_genomes_project 3 109380293 109395251 + MGP_CASTEiJ_P0063229 Henmt1 protein_coding protein_coding MGP_CASTEiJ_T0061531.1 MGP_CASTEiJ_G0026553.1 mouse_genomes_project 3 88084935 88115668 + MGP_CASTEiJ_P0061531 Smg5 protein_coding protein_coding MGP_CASTEiJ_T0061532.1 MGP_CASTEiJ_G0026553.1 mouse_genomes_project 3 88084986 88101933 + Smg5 protein_coding retained_intron MGP_CASTEiJ_T0061533.1 MGP_CASTEiJ_G0026553.1 mouse_genomes_project 3 88085040 88092512 + Smg5 protein_coding retained_intron MGP_CASTEiJ_T0061534.1 MGP_CASTEiJ_G0026553.1 mouse_genomes_project 3 88089911 88096777 + Smg5 protein_coding processed_transcript MGP_CASTEiJ_T0061535.1 MGP_CASTEiJ_G0026553.1 mouse_genomes_project 3 88091634 88099934 + MGP_CASTEiJ_P0061535 Smg5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061536.1 MGP_CASTEiJ_G0026553.1 mouse_genomes_project 3 88101699 88103841 + Smg5 protein_coding retained_intron MGP_CASTEiJ_T0061537.1 MGP_CASTEiJ_G0026553.1 mouse_genomes_project 3 88111512 88112960 + Smg5 protein_coding retained_intron MGP_CASTEiJ_T0061538.1 MGP_CASTEiJ_G0026553.1 mouse_genomes_project 3 88111669 88114594 + Smg5 protein_coding processed_transcript MGP_CASTEiJ_T0061539.1 MGP_CASTEiJ_G0026553.1 mouse_genomes_project 3 88113859 88114415 + Smg5 protein_coding retained_intron MGP_CASTEiJ_T0063075.1 MGP_CASTEiJ_G0026915.1 mouse_genomes_project 3 108249481 108252347 + MGP_CASTEiJ_P0063075 Gstm5 protein_coding protein_coding MGP_CASTEiJ_T0063076.1 MGP_CASTEiJ_G0026915.1 mouse_genomes_project 3 108249496 108252235 + MGP_CASTEiJ_P0063076 Gstm5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063077.1 MGP_CASTEiJ_G0026915.1 mouse_genomes_project 3 108249506 108252347 + MGP_CASTEiJ_P0063077 Gstm5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063078.1 MGP_CASTEiJ_G0026915.1 mouse_genomes_project 3 108249589 108252354 + MGP_CASTEiJ_P0063078 Gstm5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063079.1 MGP_CASTEiJ_G0026915.1 mouse_genomes_project 3 108249601 108252005 + MGP_CASTEiJ_P0063079 Gstm5 protein_coding protein_coding MGP_CASTEiJ_T0064340.1 MGP_CASTEiJ_G0027148.1 mouse_genomes_project 3 155405179 155487238 + MGP_CASTEiJ_P0064340 Pigk protein_coding protein_coding MGP_CASTEiJ_T0064341.1 MGP_CASTEiJ_G0027148.1 mouse_genomes_project 3 155405185 155435304 + Pigk protein_coding retained_intron MGP_CASTEiJ_T0064342.1 MGP_CASTEiJ_G0027148.1 mouse_genomes_project 3 155405192 155483089 + MGP_CASTEiJ_P0064342 Pigk protein_coding protein_coding MGP_CASTEiJ_T0064343.1 MGP_CASTEiJ_G0027148.1 mouse_genomes_project 3 155405192 155540247 + MGP_CASTEiJ_P0064343 Pigk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064344.1 MGP_CASTEiJ_G0027148.1 mouse_genomes_project 3 155405199 155685895 + MGP_CASTEiJ_P0064344 Pigk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064345.1 MGP_CASTEiJ_G0027148.1 mouse_genomes_project 3 155405202 155482821 + MGP_CASTEiJ_P0064345 Pigk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064346.1 MGP_CASTEiJ_G0027148.1 mouse_genomes_project 3 155432084 155434257 + Pigk protein_coding processed_transcript MGP_CASTEiJ_T0064347.1 MGP_CASTEiJ_G0027148.1 mouse_genomes_project 3 155432303 155483015 + MGP_CASTEiJ_P0064347 Pigk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064348.1 MGP_CASTEiJ_G0027148.1 mouse_genomes_project 3 155459939 155463063 + Pigk protein_coding processed_transcript MGP_CASTEiJ_T0004089.1 MGP_CASTEiJ_G0003610.1 mouse_genomes_project 3 30496789 30545488 + Gm37459 antisense antisense MGP_CASTEiJ_T0004090.1 MGP_CASTEiJ_G0003610.1 mouse_genomes_project 3 30536751 30541962 + Gm37459 antisense antisense MGP_CASTEiJ_T0061161.1 MGP_CASTEiJ_G0026471.1 mouse_genomes_project 3 74622405 74714511 + MGP_CASTEiJ_P0061161 Serpini1 protein_coding protein_coding MGP_CASTEiJ_T0061162.1 MGP_CASTEiJ_G0026471.1 mouse_genomes_project 3 74622405 74686468 + MGP_CASTEiJ_P0061162 Serpini1 protein_coding protein_coding MGP_CASTEiJ_T0061163.1 MGP_CASTEiJ_G0026471.1 mouse_genomes_project 3 74622419 74681769 + Serpini1 protein_coding processed_transcript MGP_CASTEiJ_T0061164.1 MGP_CASTEiJ_G0026471.1 mouse_genomes_project 3 74622436 74685960 + Serpini1 protein_coding retained_intron MGP_CASTEiJ_T0062601.1 MGP_CASTEiJ_G0026799.1 mouse_genomes_project 3 97015028 97038878 - MGP_CASTEiJ_P0062601 Olfr1402 protein_coding protein_coding MGP_CASTEiJ_T0060814.1 MGP_CASTEiJ_G0026390.1 mouse_genomes_project 3 53675703 53703527 + MGP_CASTEiJ_P0060814 Sohlh2 protein_coding protein_coding MGP_CASTEiJ_T0063117.1 MGP_CASTEiJ_G0026926.1 mouse_genomes_project 3 108562028 108567459 + MGP_CASTEiJ_P0063117 Amigo1 protein_coding protein_coding MGP_CASTEiJ_T0063118.1 MGP_CASTEiJ_G0026926.1 mouse_genomes_project 3 108562119 108567456 + MGP_CASTEiJ_P0063118 Amigo1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063119.1 MGP_CASTEiJ_G0026926.1 mouse_genomes_project 3 108563721 108567457 + MGP_CASTEiJ_P0063119 Amigo1 protein_coding protein_coding MGP_CASTEiJ_T0063120.1 MGP_CASTEiJ_G0026926.1 mouse_genomes_project 3 108563779 108567449 + MGP_CASTEiJ_P0063120 Amigo1 protein_coding protein_coding MGP_CASTEiJ_T0007399.1 MGP_CASTEiJ_G0006073.1 mouse_genomes_project 3 82219146 82225397 + Gm30043 lincRNA lincRNA MGP_CASTEiJ_T0007259.1 MGP_CASTEiJ_G0005969.1 mouse_genomes_project 3 5120352 5151929 - 1700010I02Rik lincRNA lincRNA MGP_CASTEiJ_T0007260.1 MGP_CASTEiJ_G0005969.1 mouse_genomes_project 3 5120352 5151936 - 1700010I02Rik lincRNA lincRNA MGP_CASTEiJ_T0102272.1 MGP_CASTEiJ_G0038997.1 mouse_genomes_project 3 78309179 78309743 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013567.1 MGP_CASTEiJ_G0011730.1 mouse_genomes_project 3 35047116 35047435 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001222.1 MGP_CASTEiJ_G0001153.1 mouse_genomes_project 3 97015028 97038878 + TEC TEC MGP_CASTEiJ_T0060504.1 MGP_CASTEiJ_G0026333.1 mouse_genomes_project 3 34777679 34822130 + MGP_CASTEiJ_P0060504 Adad1 protein_coding protein_coding MGP_CASTEiJ_T0060505.1 MGP_CASTEiJ_G0026333.1 mouse_genomes_project 3 34777783 34821130 + MGP_CASTEiJ_P0060505 Adad1 protein_coding protein_coding MGP_CASTEiJ_T0060506.1 MGP_CASTEiJ_G0026333.1 mouse_genomes_project 3 34777830 34781500 + Adad1 protein_coding retained_intron MGP_CASTEiJ_T0060507.1 MGP_CASTEiJ_G0026333.1 mouse_genomes_project 3 34798965 34806142 + Adad1 protein_coding retained_intron MGP_CASTEiJ_T0060508.1 MGP_CASTEiJ_G0026333.1 mouse_genomes_project 3 34799102 34831270 + MGP_CASTEiJ_P0060508 Adad1 protein_coding protein_coding MGP_CASTEiJ_T0001307.1 MGP_CASTEiJ_G0001237.1 mouse_genomes_project 3 135213573 135221023 - TEC TEC MGP_CASTEiJ_T0007549.1 MGP_CASTEiJ_G0006192.1 mouse_genomes_project 3 145516650 145518739 + 1700001N15Rik lincRNA lincRNA MGP_CASTEiJ_T0013468.1 MGP_CASTEiJ_G0011631.1 mouse_genomes_project 3 3374274 3374690 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062529.1 MGP_CASTEiJ_G0026785.1 mouse_genomes_project 3 96187374 96206505 + MGP_CASTEiJ_P0062529 Gm42957 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0004085.1 MGP_CASTEiJ_G0003607.1 mouse_genomes_project 3 28809876 28844986 + Gm15496 antisense antisense MGP_CASTEiJ_T0004086.1 MGP_CASTEiJ_G0003607.1 mouse_genomes_project 3 28838614 28843100 + Gm15496 antisense antisense MGP_CASTEiJ_T0099714.1 MGP_CASTEiJ_G0036627.1 mouse_genomes_project 3 85813430 85813541 + Gm23025 snRNA snRNA MGP_CASTEiJ_T0061290.1 MGP_CASTEiJ_G0026502.1 mouse_genomes_project 3 83398497 83553960 - MGP_CASTEiJ_P0061290 D930015E06Rik protein_coding protein_coding MGP_CASTEiJ_T0061291.1 MGP_CASTEiJ_G0026502.1 mouse_genomes_project 3 83399030 83553922 - MGP_CASTEiJ_P0061291 D930015E06Rik protein_coding protein_coding MGP_CASTEiJ_T0061292.1 MGP_CASTEiJ_G0026502.1 mouse_genomes_project 3 83399030 83553960 - MGP_CASTEiJ_P0061292 D930015E06Rik protein_coding protein_coding MGP_CASTEiJ_T0061293.1 MGP_CASTEiJ_G0026502.1 mouse_genomes_project 3 83399031 83410061 - D930015E06Rik protein_coding processed_transcript MGP_CASTEiJ_T0061294.1 MGP_CASTEiJ_G0026502.1 mouse_genomes_project 3 83399111 83553931 - MGP_CASTEiJ_P0061294 D930015E06Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0061295.1 MGP_CASTEiJ_G0026502.1 mouse_genomes_project 3 83401184 83408432 - D930015E06Rik protein_coding retained_intron MGP_CASTEiJ_T0061296.1 MGP_CASTEiJ_G0026502.1 mouse_genomes_project 3 83401198 83410387 - D930015E06Rik protein_coding retained_intron MGP_CASTEiJ_T0061297.1 MGP_CASTEiJ_G0026502.1 mouse_genomes_project 3 83422157 83477230 - D930015E06Rik protein_coding processed_transcript MGP_CASTEiJ_T0061298.1 MGP_CASTEiJ_G0026502.1 mouse_genomes_project 3 83447930 83451536 - D930015E06Rik protein_coding processed_transcript MGP_CASTEiJ_T0061299.1 MGP_CASTEiJ_G0026502.1 mouse_genomes_project 3 83544079 83553913 - D930015E06Rik protein_coding retained_intron MGP_CASTEiJ_T0061300.1 MGP_CASTEiJ_G0026502.1 mouse_genomes_project 3 83550959 83553946 - D930015E06Rik protein_coding retained_intron MGP_CASTEiJ_T0061301.1 MGP_CASTEiJ_G0026502.1 mouse_genomes_project 3 83551151 83553919 - D930015E06Rik protein_coding retained_intron MGP_CASTEiJ_T0099689.1 MGP_CASTEiJ_G0036602.1 mouse_genomes_project 3 42864013 42864118 + Gm24997 snRNA snRNA MGP_CASTEiJ_T0007483.1 MGP_CASTEiJ_G0006137.1 mouse_genomes_project 3 117668851 117689489 - 1700061I17Rik lincRNA lincRNA MGP_CASTEiJ_T0063174.1 MGP_CASTEiJ_G0026939.1 mouse_genomes_project 3 108983917 108985469 + Taf13 protein_coding retained_intron MGP_CASTEiJ_T0063175.1 MGP_CASTEiJ_G0026939.1 mouse_genomes_project 3 108983928 108993321 + MGP_CASTEiJ_P0063175 Taf13 protein_coding unknown_likely_coding MGP_CASTEiJ_T0001170.1 MGP_CASTEiJ_G0001101.1 mouse_genomes_project 3 54640699 54643710 - TEC TEC MGP_CASTEiJ_T0007486.1 MGP_CASTEiJ_G0006140.1 mouse_genomes_project 3 119160881 119162091 + Gm9916 lincRNA lincRNA MGP_CASTEiJ_T0013673.1 MGP_CASTEiJ_G0011836.1 mouse_genomes_project 3 70357879 70358335 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062470.1 MGP_CASTEiJ_G0026758.1 mouse_genomes_project 3 95642228 95698937 + MGP_CASTEiJ_P0062470 Otud7b protein_coding protein_coding MGP_CASTEiJ_T0062471.1 MGP_CASTEiJ_G0026758.1 mouse_genomes_project 3 95642228 95698937 + MGP_CASTEiJ_P0062471 Otud7b protein_coding protein_coding MGP_CASTEiJ_T0062472.1 MGP_CASTEiJ_G0026758.1 mouse_genomes_project 3 95642228 95682128 + MGP_CASTEiJ_P0062472 Otud7b protein_coding protein_coding MGP_CASTEiJ_T0062473.1 MGP_CASTEiJ_G0026758.1 mouse_genomes_project 3 95642228 95679319 + MGP_CASTEiJ_P0062473 Otud7b protein_coding protein_coding MGP_CASTEiJ_T0062474.1 MGP_CASTEiJ_G0026758.1 mouse_genomes_project 3 95642247 95668912 + Otud7b protein_coding processed_transcript MGP_CASTEiJ_T0062475.1 MGP_CASTEiJ_G0026758.1 mouse_genomes_project 3 95642249 95679354 + Otud7b protein_coding processed_transcript MGP_CASTEiJ_T0062476.1 MGP_CASTEiJ_G0026758.1 mouse_genomes_project 3 95644787 95698937 + MGP_CASTEiJ_P0062476 Otud7b protein_coding protein_coding MGP_CASTEiJ_T0062477.1 MGP_CASTEiJ_G0026758.1 mouse_genomes_project 3 95688512 95690372 + Otud7b protein_coding processed_transcript MGP_CASTEiJ_T0061439.1 MGP_CASTEiJ_G0026533.1 mouse_genomes_project 3 87555845 87561866 + MGP_CASTEiJ_P0061439 Sh2d2a protein_coding protein_coding MGP_CASTEiJ_T0061440.1 MGP_CASTEiJ_G0026533.1 mouse_genomes_project 3 87556095 87564806 + MGP_CASTEiJ_P0061440 Sh2d2a protein_coding protein_coding MGP_CASTEiJ_T0061441.1 MGP_CASTEiJ_G0026533.1 mouse_genomes_project 3 87556101 87559031 + Sh2d2a protein_coding retained_intron MGP_CASTEiJ_T0063223.1 MGP_CASTEiJ_G0026948.1 mouse_genomes_project 3 109379042 109379435 - MGP_CASTEiJ_P0063223 Gm9857 protein_coding protein_coding MGP_CASTEiJ_T0001086.1 MGP_CASTEiJ_G0001019.1 mouse_genomes_project 3 28466474 28466784 - TEC TEC MGP_CASTEiJ_T0098591.1 MGP_CASTEiJ_G0035522.1 mouse_genomes_project 3 68532691 68532805 + Gm25621 rRNA rRNA MGP_CASTEiJ_T0013756.1 MGP_CASTEiJ_G0011919.1 mouse_genomes_project 3 98535445 98535631 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013844.1 MGP_CASTEiJ_G0012007.1 mouse_genomes_project 3 126080974 126081982 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060789.1 MGP_CASTEiJ_G0026385.1 mouse_genomes_project 3 53275622 53280181 - MGP_CASTEiJ_P0060789 Rfxap protein_coding protein_coding MGP_CASTEiJ_T0060790.1 MGP_CASTEiJ_G0026385.1 mouse_genomes_project 3 53276731 53278161 - Rfxap protein_coding processed_transcript MGP_CASTEiJ_T0060791.1 MGP_CASTEiJ_G0026385.1 mouse_genomes_project 3 53278168 53279810 - Rfxap protein_coding processed_transcript MGP_CASTEiJ_T0013794.1 MGP_CASTEiJ_G0011957.1 mouse_genomes_project 3 109638419 109639291 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013883.1 MGP_CASTEiJ_G0012046.1 mouse_genomes_project 3 139656748 139657993 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013728.1 MGP_CASTEiJ_G0011891.1 mouse_genomes_project 3 91577388 91577689 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001301.1 MGP_CASTEiJ_G0001231.1 mouse_genomes_project 3 132699007 132701245 + TEC TEC MGP_CASTEiJ_T0004237.1 MGP_CASTEiJ_G0003710.1 mouse_genomes_project 3 127801553 127803256 - Gm15551 antisense antisense MGP_CASTEiJ_T0100994.1 MGP_CASTEiJ_G0037907.1 mouse_genomes_project 3 121480815 121480943 - Gm25013 snoRNA snoRNA MGP_CASTEiJ_T0013799.1 MGP_CASTEiJ_G0011962.1 mouse_genomes_project 3 111598357 111598674 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062082.1 MGP_CASTEiJ_G0026667.1 mouse_genomes_project 3 91897938 91899511 - MGP_CASTEiJ_P0062082 Lce6a protein_coding protein_coding MGP_CASTEiJ_T0062083.1 MGP_CASTEiJ_G0026667.1 mouse_genomes_project 3 91897942 91899031 - MGP_CASTEiJ_P0062083 Lce6a protein_coding protein_coding MGP_CASTEiJ_T0013869.1 MGP_CASTEiJ_G0012032.1 mouse_genomes_project 3 136568746 136570543 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063115.1 MGP_CASTEiJ_G0026925.1 mouse_genomes_project 3 108521217 108527778 - MGP_CASTEiJ_P0063115 Gpr61 protein_coding protein_coding MGP_CASTEiJ_T0063116.1 MGP_CASTEiJ_G0026925.1 mouse_genomes_project 3 108521553 108527778 - MGP_CASTEiJ_P0063116 Gpr61 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0007580.1 MGP_CASTEiJ_G0006216.1 mouse_genomes_project 3 153134987 153140483 + Gm43470 lincRNA lincRNA MGP_CASTEiJ_T0007581.1 MGP_CASTEiJ_G0006216.1 mouse_genomes_project 3 153135066 153159388 + Gm43470 lincRNA lincRNA MGP_CASTEiJ_T0063195.1 MGP_CASTEiJ_G0026943.1 mouse_genomes_project 3 109155579 109206710 + MGP_CASTEiJ_P0063195 Aknad1 protein_coding protein_coding MGP_CASTEiJ_T0063196.1 MGP_CASTEiJ_G0026943.1 mouse_genomes_project 3 109162016 109198682 + MGP_CASTEiJ_P0063196 Aknad1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063197.1 MGP_CASTEiJ_G0026943.1 mouse_genomes_project 3 109170690 109183803 + Aknad1 protein_coding retained_intron MGP_CASTEiJ_T0063198.1 MGP_CASTEiJ_G0026943.1 mouse_genomes_project 3 109180606 109198387 + Aknad1 protein_coding retained_intron MGP_CASTEiJ_T0013867.1 MGP_CASTEiJ_G0012030.1 mouse_genomes_project 3 136566026 136566482 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004283.1 MGP_CASTEiJ_G0003743.1 mouse_genomes_project 3 159807996 159826124 - Gm15577 antisense antisense MGP_CASTEiJ_T0013513.1 MGP_CASTEiJ_G0011676.1 mouse_genomes_project 3 14627891 14628342 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062946.1 MGP_CASTEiJ_G0026880.1 mouse_genomes_project 3 105894665 105896398 + Tmigd3 protein_coding processed_transcript MGP_CASTEiJ_T0062947.1 MGP_CASTEiJ_G0026880.1 mouse_genomes_project 3 105894669 105952246 + MGP_CASTEiJ_P0062947 Tmigd3 protein_coding protein_coding MGP_CASTEiJ_T0062948.1 MGP_CASTEiJ_G0026880.1 mouse_genomes_project 3 105894669 105952165 + MGP_CASTEiJ_P0062948 Tmigd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062949.1 MGP_CASTEiJ_G0026880.1 mouse_genomes_project 3 105894739 105895631 + Tmigd3 protein_coding processed_transcript MGP_CASTEiJ_T0062951.1 MGP_CASTEiJ_G0026880.1 mouse_genomes_project 3 105929071 105946674 + MGP_CASTEiJ_P0062951 Tmigd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062953.1 MGP_CASTEiJ_G0026880.1 mouse_genomes_project 3 105941579 105952249 + MGP_CASTEiJ_P0062953 Tmigd3 protein_coding protein_coding MGP_CASTEiJ_T0062954.1 MGP_CASTEiJ_G0026880.1 mouse_genomes_project 3 105941579 105952252 + MGP_CASTEiJ_P0062954 Tmigd3 protein_coding protein_coding MGP_CASTEiJ_T0004107.1 MGP_CASTEiJ_G0003622.1 mouse_genomes_project 3 43333192 43358662 - 1700027H10Rik antisense antisense MGP_CASTEiJ_T0061540.1 MGP_CASTEiJ_G0026554.1 mouse_genomes_project 3 88117875 88151314 + MGP_CASTEiJ_P0061540 Paqr6 protein_coding protein_coding MGP_CASTEiJ_T0061541.1 MGP_CASTEiJ_G0026554.1 mouse_genomes_project 3 88117880 88151817 + MGP_CASTEiJ_P0061541 Paqr6 protein_coding protein_coding MGP_CASTEiJ_T0061542.1 MGP_CASTEiJ_G0026554.1 mouse_genomes_project 3 88117882 88150536 + Paqr6 protein_coding processed_transcript MGP_CASTEiJ_T0061543.1 MGP_CASTEiJ_G0026554.1 mouse_genomes_project 3 88117884 88119093 + Paqr6 protein_coding retained_intron MGP_CASTEiJ_T0061544.1 MGP_CASTEiJ_G0026554.1 mouse_genomes_project 3 88150015 88151817 + Paqr6 protein_coding retained_intron MGP_CASTEiJ_T0063556.1 MGP_CASTEiJ_G0027012.1 mouse_genomes_project 3 126958153 127033119 - MGP_CASTEiJ_P0063556 Ugt8a protein_coding protein_coding MGP_CASTEiJ_T0063557.1 MGP_CASTEiJ_G0027012.1 mouse_genomes_project 3 126958435 127006158 - MGP_CASTEiJ_P0063557 Ugt8a protein_coding protein_coding MGP_CASTEiJ_T0063558.1 MGP_CASTEiJ_G0027012.1 mouse_genomes_project 3 127004537 127033051 - Ugt8a protein_coding retained_intron MGP_CASTEiJ_T0007515.1 MGP_CASTEiJ_G0006160.1 mouse_genomes_project 3 132395916 132398668 + Gm43351 lincRNA lincRNA MGP_CASTEiJ_T0099702.1 MGP_CASTEiJ_G0036615.1 mouse_genomes_project 3 62508652 62508750 + Gm23500 snRNA snRNA MGP_CASTEiJ_T0060808.1 MGP_CASTEiJ_G0026389.1 mouse_genomes_project 3 53628422 53665859 + MGP_CASTEiJ_P0060808 Ccdc169 protein_coding protein_coding MGP_CASTEiJ_T0060809.1 MGP_CASTEiJ_G0026389.1 mouse_genomes_project 3 53631113 53664479 + MGP_CASTEiJ_P0060809 Ccdc169 protein_coding protein_coding MGP_CASTEiJ_T0060810.1 MGP_CASTEiJ_G0026389.1 mouse_genomes_project 3 53631113 53663425 + MGP_CASTEiJ_P0060810 Ccdc169 protein_coding protein_coding MGP_CASTEiJ_T0060811.1 MGP_CASTEiJ_G0026389.1 mouse_genomes_project 3 53631130 53648241 + MGP_CASTEiJ_P0060811 Ccdc169 protein_coding protein_coding MGP_CASTEiJ_T0060812.1 MGP_CASTEiJ_G0026389.1 mouse_genomes_project 3 53633362 53664533 + MGP_CASTEiJ_P0060812 Ccdc169 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060813.1 MGP_CASTEiJ_G0026389.1 mouse_genomes_project 3 53633362 53664533 + MGP_CASTEiJ_P0060813 Ccdc169 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013577.1 MGP_CASTEiJ_G0011740.1 mouse_genomes_project 3 38374367 38374667 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001341.1 MGP_CASTEiJ_G0001271.1 mouse_genomes_project 3 159634964 159636638 + TEC TEC MGP_CASTEiJ_T0013896.1 MGP_CASTEiJ_G0012059.1 mouse_genomes_project 3 142752950 142753545 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062097.1 MGP_CASTEiJ_G0026680.1 mouse_genomes_project 3 92137317 92138655 - MGP_CASTEiJ_P0062097 Lce1l protein_coding protein_coding MGP_CASTEiJ_T0061767.1 MGP_CASTEiJ_G0026586.1 mouse_genomes_project 3 89121967 89132868 - MGP_CASTEiJ_P0061767 Trim46 protein_coding protein_coding MGP_CASTEiJ_T0061768.1 MGP_CASTEiJ_G0026586.1 mouse_genomes_project 3 89121967 89133761 - MGP_CASTEiJ_P0061768 Trim46 protein_coding protein_coding MGP_CASTEiJ_T0061769.1 MGP_CASTEiJ_G0026586.1 mouse_genomes_project 3 89121967 89133054 - MGP_CASTEiJ_P0061769 Trim46 protein_coding protein_coding MGP_CASTEiJ_T0061770.1 MGP_CASTEiJ_G0026586.1 mouse_genomes_project 3 89122625 89127132 - Trim46 protein_coding processed_transcript MGP_CASTEiJ_T0061771.1 MGP_CASTEiJ_G0026586.1 mouse_genomes_project 3 89122658 89133736 - MGP_CASTEiJ_P0061771 Trim46 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061772.1 MGP_CASTEiJ_G0026586.1 mouse_genomes_project 3 89132148 89134173 - MGP_CASTEiJ_P0061772 Trim46 protein_coding protein_coding MGP_CASTEiJ_T0004242.1 MGP_CASTEiJ_G0003714.1 mouse_genomes_project 3 130962661 130968931 - Gm35986 antisense antisense MGP_CASTEiJ_T0004243.1 MGP_CASTEiJ_G0003714.1 mouse_genomes_project 3 130962826 130969210 - Gm35986 antisense antisense MGP_CASTEiJ_T0064327.1 MGP_CASTEiJ_G0027146.1 mouse_genomes_project 3 155061260 155133862 + MGP_CASTEiJ_P0064327 Zzz3 protein_coding protein_coding MGP_CASTEiJ_T0064328.1 MGP_CASTEiJ_G0027146.1 mouse_genomes_project 3 155061312 155096695 + Zzz3 protein_coding retained_intron MGP_CASTEiJ_T0064329.1 MGP_CASTEiJ_G0027146.1 mouse_genomes_project 3 155061790 155138219 + MGP_CASTEiJ_P0064329 Zzz3 protein_coding protein_coding MGP_CASTEiJ_T0064330.1 MGP_CASTEiJ_G0027146.1 mouse_genomes_project 3 155061819 155119743 + Zzz3 protein_coding processed_transcript MGP_CASTEiJ_T0064331.1 MGP_CASTEiJ_G0027146.1 mouse_genomes_project 3 155061866 155119441 + Zzz3 protein_coding processed_transcript MGP_CASTEiJ_T0064332.1 MGP_CASTEiJ_G0027146.1 mouse_genomes_project 3 155062468 155133862 + MGP_CASTEiJ_P0064332 Zzz3 protein_coding protein_coding MGP_CASTEiJ_T0064333.1 MGP_CASTEiJ_G0027146.1 mouse_genomes_project 3 155062478 155138219 + MGP_CASTEiJ_P0064333 Zzz3 protein_coding protein_coding MGP_CASTEiJ_T0064334.1 MGP_CASTEiJ_G0027146.1 mouse_genomes_project 3 155105002 155109466 + Zzz3 protein_coding retained_intron MGP_CASTEiJ_T0064335.1 MGP_CASTEiJ_G0027146.1 mouse_genomes_project 3 155129297 155133420 + Zzz3 protein_coding processed_transcript MGP_CASTEiJ_T0001107.1 MGP_CASTEiJ_G0001040.1 mouse_genomes_project 3 35385987 35388034 - TEC TEC MGP_CASTEiJ_T0060352.1 MGP_CASTEiJ_G0026310.1 mouse_genomes_project 3 30269828 30283093 - MGP_CASTEiJ_P0060352 Mrpl47 protein_coding protein_coding MGP_CASTEiJ_T0060353.1 MGP_CASTEiJ_G0026310.1 mouse_genomes_project 3 30271994 30276502 - Mrpl47 protein_coding processed_transcript MGP_CASTEiJ_T0060354.1 MGP_CASTEiJ_G0026310.1 mouse_genomes_project 3 30282046 30283589 - Mrpl47 protein_coding retained_intron MGP_CASTEiJ_T0063284.1 MGP_CASTEiJ_G0026961.1 mouse_genomes_project 3 116428071 116454034 + MGP_CASTEiJ_P0063284 Dph5 protein_coding protein_coding MGP_CASTEiJ_T0063285.1 MGP_CASTEiJ_G0026961.1 mouse_genomes_project 3 116428086 116428713 + MGP_CASTEiJ_P0063285 Dph5 protein_coding protein_coding MGP_CASTEiJ_T0063286.1 MGP_CASTEiJ_G0026961.1 mouse_genomes_project 3 116428380 116440042 + MGP_CASTEiJ_P0063286 Dph5 protein_coding protein_coding MGP_CASTEiJ_T0063287.1 MGP_CASTEiJ_G0026961.1 mouse_genomes_project 3 116428398 116460365 + MGP_CASTEiJ_P0063287 Dph5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063288.1 MGP_CASTEiJ_G0026961.1 mouse_genomes_project 3 116428406 116441410 + MGP_CASTEiJ_P0063288 Dph5 protein_coding protein_coding MGP_CASTEiJ_T0063289.1 MGP_CASTEiJ_G0026961.1 mouse_genomes_project 3 116428416 116454651 + MGP_CASTEiJ_P0063289 Dph5 protein_coding protein_coding MGP_CASTEiJ_T0063290.1 MGP_CASTEiJ_G0026961.1 mouse_genomes_project 3 116428427 116432558 + Dph5 protein_coding retained_intron MGP_CASTEiJ_T0063291.1 MGP_CASTEiJ_G0026961.1 mouse_genomes_project 3 116428428 116433266 + Dph5 protein_coding retained_intron MGP_CASTEiJ_T0062057.1 MGP_CASTEiJ_G0026646.1 mouse_genomes_project 3 91310981 91312694 - MGP_CASTEiJ_P0062057 Prr9 protein_coding protein_coding MGP_CASTEiJ_T0013825.1 MGP_CASTEiJ_G0011988.1 mouse_genomes_project 3 120803650 120804460 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063098.1 MGP_CASTEiJ_G0026922.1 mouse_genomes_project 3 108438867 108450378 - Ampd2 protein_coding retained_intron MGP_CASTEiJ_T0063099.1 MGP_CASTEiJ_G0026922.1 mouse_genomes_project 3 108438867 108451450 - MGP_CASTEiJ_P0063099 Ampd2 protein_coding protein_coding MGP_CASTEiJ_T0063100.1 MGP_CASTEiJ_G0026922.1 mouse_genomes_project 3 108438869 108451474 - MGP_CASTEiJ_P0063100 Ampd2 protein_coding protein_coding MGP_CASTEiJ_T0063101.1 MGP_CASTEiJ_G0026922.1 mouse_genomes_project 3 108438892 108450222 - MGP_CASTEiJ_P0063101 Ampd2 protein_coding protein_coding MGP_CASTEiJ_T0063102.1 MGP_CASTEiJ_G0026922.1 mouse_genomes_project 3 108439549 108440276 - Ampd2 protein_coding retained_intron MGP_CASTEiJ_T0063103.1 MGP_CASTEiJ_G0026922.1 mouse_genomes_project 3 108440169 108441238 - Ampd2 protein_coding retained_intron MGP_CASTEiJ_T0063104.1 MGP_CASTEiJ_G0026922.1 mouse_genomes_project 3 108441418 108442701 - Ampd2 protein_coding retained_intron MGP_CASTEiJ_T0063105.1 MGP_CASTEiJ_G0026922.1 mouse_genomes_project 3 108443273 108444514 - Ampd2 protein_coding retained_intron MGP_CASTEiJ_T0063106.1 MGP_CASTEiJ_G0026922.1 mouse_genomes_project 3 108443437 108445423 - Ampd2 protein_coding retained_intron MGP_CASTEiJ_T0063107.1 MGP_CASTEiJ_G0026922.1 mouse_genomes_project 3 108444726 108450218 - Ampd2 protein_coding retained_intron MGP_CASTEiJ_T0102280.1 MGP_CASTEiJ_G0039005.1 mouse_genomes_project 3 84085587 84086122 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0001254.1 MGP_CASTEiJ_G0001185.1 mouse_genomes_project 3 122656361 122659042 - TEC TEC MGP_CASTEiJ_T0063094.1 MGP_CASTEiJ_G0026920.1 mouse_genomes_project 3 108371610 108377452 - MGP_CASTEiJ_P0063094 Gstm1 protein_coding protein_coding MGP_CASTEiJ_T0063095.1 MGP_CASTEiJ_G0026920.1 mouse_genomes_project 3 108371616 108372681 - Gstm1 protein_coding processed_transcript MGP_CASTEiJ_T0013545.1 MGP_CASTEiJ_G0011708.1 mouse_genomes_project 3 27350450 27350889 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063265.1 MGP_CASTEiJ_G0026957.1 mouse_genomes_project 3 114067761 114094402 - MGP_CASTEiJ_P0063265 Rnpc3 protein_coding protein_coding MGP_CASTEiJ_T0063266.1 MGP_CASTEiJ_G0026957.1 mouse_genomes_project 3 114069161 114094402 - MGP_CASTEiJ_P0063266 Rnpc3 protein_coding protein_coding MGP_CASTEiJ_T0063267.1 MGP_CASTEiJ_G0026957.1 mouse_genomes_project 3 114069202 114094286 - MGP_CASTEiJ_P0063267 Rnpc3 protein_coding protein_coding MGP_CASTEiJ_T0063268.1 MGP_CASTEiJ_G0026957.1 mouse_genomes_project 3 114069943 114094402 - MGP_CASTEiJ_P0063268 Rnpc3 protein_coding protein_coding MGP_CASTEiJ_T0063269.1 MGP_CASTEiJ_G0026957.1 mouse_genomes_project 3 114074716 114078720 - Rnpc3 protein_coding processed_transcript MGP_CASTEiJ_T0063270.1 MGP_CASTEiJ_G0026957.1 mouse_genomes_project 3 114079830 114086212 - Rnpc3 protein_coding processed_transcript MGP_CASTEiJ_T0063271.1 MGP_CASTEiJ_G0026957.1 mouse_genomes_project 3 114080079 114085563 - Rnpc3 protein_coding processed_transcript MGP_CASTEiJ_T0063272.1 MGP_CASTEiJ_G0026957.1 mouse_genomes_project 3 114091331 114094332 - Rnpc3 protein_coding retained_intron MGP_CASTEiJ_T0062211.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94391926 94397350 + MGP_CASTEiJ_P0062211 Rfx5 protein_coding protein_coding MGP_CASTEiJ_T0062212.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94391959 94399415 + MGP_CASTEiJ_P0062212 Rfx5 protein_coding protein_coding MGP_CASTEiJ_T0062213.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94391959 94394377 + MGP_CASTEiJ_P0062213 Rfx5 protein_coding protein_coding MGP_CASTEiJ_T0062214.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94391960 94394161 + MGP_CASTEiJ_P0062214 Rfx5 protein_coding protein_coding MGP_CASTEiJ_T0062215.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94391986 94399203 + MGP_CASTEiJ_P0062215 Rfx5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062216.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94392011 94393551 + Rfx5 protein_coding processed_transcript MGP_CASTEiJ_T0062217.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94392011 94394996 + MGP_CASTEiJ_P0062217 Rfx5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062218.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94392021 94399203 + MGP_CASTEiJ_P0062218 Rfx5 protein_coding protein_coding MGP_CASTEiJ_T0062219.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94392046 94394239 + MGP_CASTEiJ_P0062219 Rfx5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062220.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94392052 94399200 + Rfx5 protein_coding retained_intron MGP_CASTEiJ_T0062221.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94392077 94399203 + MGP_CASTEiJ_P0062221 Rfx5 protein_coding protein_coding MGP_CASTEiJ_T0062222.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94392235 94394643 + MGP_CASTEiJ_P0062222 Rfx5 protein_coding protein_coding MGP_CASTEiJ_T0062223.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94392329 94394175 + MGP_CASTEiJ_P0062223 Rfx5 protein_coding protein_coding MGP_CASTEiJ_T0062224.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94392378 94394206 + MGP_CASTEiJ_P0062224 Rfx5 protein_coding protein_coding MGP_CASTEiJ_T0062225.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94392610 94397460 + MGP_CASTEiJ_P0062225 Rfx5 protein_coding protein_coding MGP_CASTEiJ_T0062226.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94392862 94399415 + MGP_CASTEiJ_P0062226 Rfx5 protein_coding protein_coding MGP_CASTEiJ_T0062227.1 MGP_CASTEiJ_G0026716.1 mouse_genomes_project 3 94393318 94394650 + Rfx5 protein_coding retained_intron MGP_CASTEiJ_T0099762.1 MGP_CASTEiJ_G0036675.1 mouse_genomes_project 3 154584751 154584813 - Gm25056 snRNA snRNA MGP_CASTEiJ_T0007554.1 MGP_CASTEiJ_G0006197.1 mouse_genomes_project 3 145792129 145836175 - Gm6260 lincRNA lincRNA MGP_CASTEiJ_T0007555.1 MGP_CASTEiJ_G0006197.1 mouse_genomes_project 3 145815375 145836242 - Gm6260 lincRNA lincRNA MGP_CASTEiJ_T0007431.1 MGP_CASTEiJ_G0006092.1 mouse_genomes_project 3 92629648 92802693 - lincRNA lincRNA MGP_CASTEiJ_T0001079.1 MGP_CASTEiJ_G0001012.1 mouse_genomes_project 3 27592018 27593652 - TEC TEC MGP_CASTEiJ_T0063230.1 MGP_CASTEiJ_G0026949.1 mouse_genomes_project 3 109407210 109468185 - MGP_CASTEiJ_P0063230 Fam102b protein_coding unknown_likely_coding MGP_CASTEiJ_T0063231.1 MGP_CASTEiJ_G0026949.1 mouse_genomes_project 3 109410779 109468092 - MGP_CASTEiJ_P0063231 Fam102b protein_coding protein_coding MGP_CASTEiJ_T0001101.1 MGP_CASTEiJ_G0001034.1 mouse_genomes_project 3 33592588 33594959 - TEC TEC MGP_CASTEiJ_T0001315.1 MGP_CASTEiJ_G0001245.1 mouse_genomes_project 3 139648815 139651134 + TEC TEC MGP_CASTEiJ_T0013920.1 MGP_CASTEiJ_G0012083.1 mouse_genomes_project 3 156502413 156502706 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061362.1 MGP_CASTEiJ_G0026518.1 mouse_genomes_project 3 85846462 86427586 + MGP_CASTEiJ_P0061362 Lrba protein_coding protein_coding MGP_CASTEiJ_T0061363.1 MGP_CASTEiJ_G0026518.1 mouse_genomes_project 3 85846462 86389141 + MGP_CASTEiJ_P0061363 Lrba protein_coding protein_coding MGP_CASTEiJ_T0061364.1 MGP_CASTEiJ_G0026518.1 mouse_genomes_project 3 85846462 86421940 + MGP_CASTEiJ_P0061364 Lrba protein_coding protein_coding MGP_CASTEiJ_T0061365.1 MGP_CASTEiJ_G0026518.1 mouse_genomes_project 3 85979911 85981255 + Lrba protein_coding retained_intron MGP_CASTEiJ_T0061366.1 MGP_CASTEiJ_G0026518.1 mouse_genomes_project 3 86179595 86248313 + Lrba protein_coding retained_intron MGP_CASTEiJ_T0061369.1 MGP_CASTEiJ_G0026518.1 mouse_genomes_project 3 86184283 86262327 + Lrba protein_coding retained_intron MGP_CASTEiJ_T0061370.1 MGP_CASTEiJ_G0026518.1 mouse_genomes_project 3 86185744 86427589 + MGP_CASTEiJ_P0061370 Lrba protein_coding protein_coding MGP_CASTEiJ_T0061003.1 MGP_CASTEiJ_G0026434.1 mouse_genomes_project 3 63854150 64121147 + Kcnab1 protein_coding processed_transcript MGP_CASTEiJ_T0061004.1 MGP_CASTEiJ_G0026434.1 mouse_genomes_project 3 63854150 64134055 + MGP_CASTEiJ_P0061004 Kcnab1 protein_coding protein_coding MGP_CASTEiJ_T0061005.1 MGP_CASTEiJ_G0026434.1 mouse_genomes_project 3 63942455 64134059 + Kcnab1 protein_coding processed_transcript MGP_CASTEiJ_T0061006.1 MGP_CASTEiJ_G0026434.1 mouse_genomes_project 3 64008746 64132920 + Kcnab1 protein_coding processed_transcript MGP_CASTEiJ_T0061007.1 MGP_CASTEiJ_G0026434.1 mouse_genomes_project 3 64051505 64112425 + Kcnab1 protein_coding processed_transcript MGP_CASTEiJ_T0061008.1 MGP_CASTEiJ_G0026434.1 mouse_genomes_project 3 64109110 64114160 + Kcnab1 protein_coding retained_intron MGP_CASTEiJ_T0001345.1 MGP_CASTEiJ_G0001275.1 mouse_genomes_project 3 160838587 160841235 - TEC TEC MGP_CASTEiJ_T0098901.1 MGP_CASTEiJ_G0035825.1 mouse_genomes_project 3 103212974 103215203 + Gm43061 sense_intronic sense_intronic MGP_CASTEiJ_T0060361.1 MGP_CASTEiJ_G0026312.1 mouse_genomes_project 3 30373411 30495523 + MGP_CASTEiJ_P0060361 Usp13 protein_coding protein_coding MGP_CASTEiJ_T0060362.1 MGP_CASTEiJ_G0026312.1 mouse_genomes_project 3 30373436 30490738 + MGP_CASTEiJ_P0060362 Usp13 protein_coding protein_coding MGP_CASTEiJ_T0060363.1 MGP_CASTEiJ_G0026312.1 mouse_genomes_project 3 30373576 30472801 + MGP_CASTEiJ_P0060363 Usp13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060364.1 MGP_CASTEiJ_G0026312.1 mouse_genomes_project 3 30472770 30490746 + MGP_CASTEiJ_P0060364 Usp13 protein_coding protein_coding MGP_CASTEiJ_T0004150.1 MGP_CASTEiJ_G0003655.1 mouse_genomes_project 3 89213964 89217419 + Gm15998 antisense antisense MGP_CASTEiJ_T0013515.1 MGP_CASTEiJ_G0011678.1 mouse_genomes_project 3 15161120 15162038 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004131.1 MGP_CASTEiJ_G0003641.1 mouse_genomes_project 3 64755518 64761155 + Gm37305 antisense antisense MGP_CASTEiJ_T0063709.1 MGP_CASTEiJ_G0027036.1 mouse_genomes_project 3 131457256 131540085 - MGP_CASTEiJ_P0063709 Sec24b protein_coding protein_coding MGP_CASTEiJ_T0063710.1 MGP_CASTEiJ_G0027036.1 mouse_genomes_project 3 131457941 131459019 - Sec24b protein_coding retained_intron MGP_CASTEiJ_T0063711.1 MGP_CASTEiJ_G0027036.1 mouse_genomes_project 3 131458110 131458781 - Sec24b protein_coding processed_transcript MGP_CASTEiJ_T0063712.1 MGP_CASTEiJ_G0027036.1 mouse_genomes_project 3 131463812 131465555 - Sec24b protein_coding retained_intron MGP_CASTEiJ_T0063713.1 MGP_CASTEiJ_G0027036.1 mouse_genomes_project 3 131465469 131523228 - MGP_CASTEiJ_P0063713 Sec24b protein_coding protein_coding MGP_CASTEiJ_T0063714.1 MGP_CASTEiJ_G0027036.1 mouse_genomes_project 3 131483956 131523201 - Sec24b protein_coding retained_intron MGP_CASTEiJ_T0063715.1 MGP_CASTEiJ_G0027036.1 mouse_genomes_project 3 131483982 131523504 - MGP_CASTEiJ_P0063715 Sec24b protein_coding protein_coding MGP_CASTEiJ_T0063716.1 MGP_CASTEiJ_G0027036.1 mouse_genomes_project 3 131486361 131507792 - Sec24b protein_coding retained_intron MGP_CASTEiJ_T0063717.1 MGP_CASTEiJ_G0027036.1 mouse_genomes_project 3 131523620 131540737 - Sec24b protein_coding processed_transcript MGP_CASTEiJ_T0013702.1 MGP_CASTEiJ_G0011865.1 mouse_genomes_project 3 80790582 80790862 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001279.1 MGP_CASTEiJ_G0001210.1 mouse_genomes_project 3 128300225 128303942 - TEC TEC MGP_CASTEiJ_T0102293.1 MGP_CASTEiJ_G0039018.1 mouse_genomes_project 3 106426890 106427997 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0059962.1 MGP_CASTEiJ_G0026224.1 mouse_genomes_project 3 5901688 5905585 - MGP_CASTEiJ_P0059962 Hey1 protein_coding protein_coding MGP_CASTEiJ_T0059963.1 MGP_CASTEiJ_G0026224.1 mouse_genomes_project 3 5903028 5905313 - Hey1 protein_coding retained_intron MGP_CASTEiJ_T0059964.1 MGP_CASTEiJ_G0026224.1 mouse_genomes_project 3 5903125 5904954 - Hey1 protein_coding retained_intron MGP_CASTEiJ_T0059965.1 MGP_CASTEiJ_G0026224.1 mouse_genomes_project 3 5903871 5905293 - Hey1 protein_coding retained_intron MGP_CASTEiJ_T0001209.1 MGP_CASTEiJ_G0001140.1 mouse_genomes_project 3 90294724 90300290 + TEC TEC MGP_CASTEiJ_T0010229.1 MGP_CASTEiJ_G0008417.1 mouse_genomes_project 3 64426382 64426521 + Mir8120 miRNA miRNA MGP_CASTEiJ_T0001167.1 MGP_CASTEiJ_G0001098.1 mouse_genomes_project 3 54023649 54025676 + TEC TEC MGP_CASTEiJ_T0001342.1 MGP_CASTEiJ_G0001272.1 mouse_genomes_project 3 159904818 159907989 + TEC TEC MGP_CASTEiJ_T0062081.1 MGP_CASTEiJ_G0026666.1 mouse_genomes_project 3 91878685 91881368 - MGP_CASTEiJ_P0062081 2210017I01Rik protein_coding protein_coding MGP_CASTEiJ_T0063695.1 MGP_CASTEiJ_G0027032.1 mouse_genomes_project 3 131290584 131307059 + MGP_CASTEiJ_P0063695 Cfi protein_coding protein_coding MGP_CASTEiJ_T0063696.1 MGP_CASTEiJ_G0027032.1 mouse_genomes_project 3 131291409 131333195 + MGP_CASTEiJ_P0063696 Cfi protein_coding protein_coding MGP_CASTEiJ_T0004248.1 MGP_CASTEiJ_G0003719.1 mouse_genomes_project 3 132869440 132886170 + 4930534D22Rik antisense antisense MGP_CASTEiJ_T0062199.1 MGP_CASTEiJ_G0026713.1 mouse_genomes_project 3 94303840 94306714 - MGP_CASTEiJ_P0062199 Psmb4 protein_coding protein_coding MGP_CASTEiJ_T0062200.1 MGP_CASTEiJ_G0026713.1 mouse_genomes_project 3 94304069 94304591 - Psmb4 protein_coding retained_intron MGP_CASTEiJ_T0062201.1 MGP_CASTEiJ_G0026713.1 mouse_genomes_project 3 94304648 94306615 - Psmb4 protein_coding retained_intron MGP_CASTEiJ_T0062202.1 MGP_CASTEiJ_G0026713.1 mouse_genomes_project 3 94304667 94306498 - Psmb4 protein_coding retained_intron MGP_CASTEiJ_T0062203.1 MGP_CASTEiJ_G0026713.1 mouse_genomes_project 3 94305057 94305706 - Psmb4 protein_coding retained_intron MGP_CASTEiJ_T0004076.1 MGP_CASTEiJ_G0003601.1 mouse_genomes_project 3 23633724 23634953 + A830092H15Rik antisense antisense MGP_CASTEiJ_T0004077.1 MGP_CASTEiJ_G0003601.1 mouse_genomes_project 3 23634525 23635936 + A830092H15Rik antisense antisense MGP_CASTEiJ_T0001325.1 MGP_CASTEiJ_G0001255.1 mouse_genomes_project 3 154483723 154487176 + TEC TEC MGP_CASTEiJ_T0062986.1 MGP_CASTEiJ_G0026891.1 mouse_genomes_project 3 106780599 106786727 + Dennd2d protein_coding processed_transcript MGP_CASTEiJ_T0062987.1 MGP_CASTEiJ_G0026891.1 mouse_genomes_project 3 106780625 106801046 + MGP_CASTEiJ_P0062987 Dennd2d protein_coding protein_coding MGP_CASTEiJ_T0062988.1 MGP_CASTEiJ_G0026891.1 mouse_genomes_project 3 106780644 106786745 + MGP_CASTEiJ_P0062988 Dennd2d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062989.1 MGP_CASTEiJ_G0026891.1 mouse_genomes_project 3 106784189 106799059 + MGP_CASTEiJ_P0062989 Dennd2d protein_coding protein_coding MGP_CASTEiJ_T0062990.1 MGP_CASTEiJ_G0026891.1 mouse_genomes_project 3 106785557 106786781 + Dennd2d protein_coding retained_intron MGP_CASTEiJ_T0062991.1 MGP_CASTEiJ_G0026891.1 mouse_genomes_project 3 106791308 106793413 + Dennd2d protein_coding retained_intron MGP_CASTEiJ_T0011207.1 MGP_CASTEiJ_G0009395.1 mouse_genomes_project 3 32246118 32246226 + Gm27611 misc_RNA misc_RNA MGP_CASTEiJ_T0060481.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34554767 34592070 + protein_coding retained_intron MGP_CASTEiJ_T0060482.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34554769 34767183 + MGP_CASTEiJ_P0060482 protein_coding protein_coding MGP_CASTEiJ_T0060483.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34554784 34585841 + protein_coding retained_intron MGP_CASTEiJ_T0060484.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34554784 34645667 + protein_coding retained_intron MGP_CASTEiJ_T0060485.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34554791 34690000 + MGP_CASTEiJ_P0060485 protein_coding unknown_likely_coding MGP_CASTEiJ_T0060486.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34554819 34650422 + MGP_CASTEiJ_P0060486 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060487.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34556125 34632226 + protein_coding retained_intron MGP_CASTEiJ_T0060488.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34561654 34767183 + MGP_CASTEiJ_P0060488 protein_coding protein_coding MGP_CASTEiJ_T0060489.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34561667 34585848 + protein_coding retained_intron MGP_CASTEiJ_T0060490.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34592547 34597170 + protein_coding retained_intron MGP_CASTEiJ_T0060491.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34597079 34650424 + MGP_CASTEiJ_P0060491 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060492.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34605786 34619878 + protein_coding retained_intron MGP_CASTEiJ_T0060493.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34648488 34650419 + protein_coding retained_intron MGP_CASTEiJ_T0060494.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34715654 34767165 + MGP_CASTEiJ_P0060494 protein_coding protein_coding MGP_CASTEiJ_T0060495.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34720048 34767166 + MGP_CASTEiJ_P0060495 protein_coding protein_coding MGP_CASTEiJ_T0060496.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34720179 34767164 + MGP_CASTEiJ_P0060496 protein_coding protein_coding MGP_CASTEiJ_T0060497.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34722977 34741804 + MGP_CASTEiJ_P0060497 protein_coding protein_coding MGP_CASTEiJ_T0060498.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34727290 34735204 + protein_coding retained_intron MGP_CASTEiJ_T0060499.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34728613 34735434 + protein_coding retained_intron MGP_CASTEiJ_T0060500.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34735776 34750931 + protein_coding retained_intron MGP_CASTEiJ_T0060501.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34750913 34754017 + protein_coding retained_intron MGP_CASTEiJ_T0060502.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34751605 34754019 + protein_coding retained_intron MGP_CASTEiJ_T0060503.1 MGP_CASTEiJ_G0026332.1 mouse_genomes_project 3 34756902 34759643 + protein_coding retained_intron MGP_CASTEiJ_T0063559.1 MGP_CASTEiJ_G0027013.1 mouse_genomes_project 3 127476580 127555719 + MGP_CASTEiJ_P0063559 Arsj protein_coding protein_coding MGP_CASTEiJ_T0013777.1 MGP_CASTEiJ_G0011940.1 mouse_genomes_project 3 103115538 103115824 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062646.1 MGP_CASTEiJ_G0026811.1 mouse_genomes_project 3 98075116 98444048 + Zfp697 protein_coding processed_transcript MGP_CASTEiJ_T0062647.1 MGP_CASTEiJ_G0026811.1 mouse_genomes_project 3 98075136 98108502 + MGP_CASTEiJ_P0062647 Zfp697 protein_coding protein_coding MGP_CASTEiJ_T0062648.1 MGP_CASTEiJ_G0026811.1 mouse_genomes_project 3 98075203 98108502 + MGP_CASTEiJ_P0062648 Zfp697 protein_coding protein_coding MGP_CASTEiJ_T0060262.1 MGP_CASTEiJ_G0026292.1 mouse_genomes_project 3 28123606 28150478 + MGP_CASTEiJ_P0060262 Lrriq4 protein_coding protein_coding MGP_CASTEiJ_T0060263.1 MGP_CASTEiJ_G0026292.1 mouse_genomes_project 3 28124428 28150346 + MGP_CASTEiJ_P0060263 Lrriq4 protein_coding protein_coding MGP_CASTEiJ_T0060264.1 MGP_CASTEiJ_G0026292.1 mouse_genomes_project 3 28126981 28150346 + MGP_CASTEiJ_P0060264 Lrriq4 protein_coding protein_coding MGP_CASTEiJ_T0064336.1 MGP_CASTEiJ_G0027147.1 mouse_genomes_project 3 155138207 155350562 - MGP_CASTEiJ_P0064336 Ak5 protein_coding protein_coding MGP_CASTEiJ_T0064337.1 MGP_CASTEiJ_G0027147.1 mouse_genomes_project 3 155139255 155205488 - MGP_CASTEiJ_P0064337 Ak5 protein_coding protein_coding MGP_CASTEiJ_T0064338.1 MGP_CASTEiJ_G0027147.1 mouse_genomes_project 3 155147928 155350213 - MGP_CASTEiJ_P0064338 Ak5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064339.1 MGP_CASTEiJ_G0027147.1 mouse_genomes_project 3 155148058 155153849 - Ak5 protein_coding retained_intron MGP_CASTEiJ_T0098916.1 MGP_CASTEiJ_G0035840.1 mouse_genomes_project 3 104119114 104122202 - Gm43256 sense_intronic sense_intronic MGP_CASTEiJ_T0007564.1 MGP_CASTEiJ_G0006205.1 mouse_genomes_project 3 147917100 147919280 + Gm17501 lincRNA lincRNA MGP_CASTEiJ_T0007565.1 MGP_CASTEiJ_G0006205.1 mouse_genomes_project 3 147918900 147949440 + Gm17501 lincRNA lincRNA MGP_CASTEiJ_T0060740.1 MGP_CASTEiJ_G0026377.1 mouse_genomes_project 3 52254972 52264669 - MGP_CASTEiJ_P0060740 Ufm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0060741.1 MGP_CASTEiJ_G0026377.1 mouse_genomes_project 3 52258205 52264084 - Ufm1 protein_coding retained_intron MGP_CASTEiJ_T0060742.1 MGP_CASTEiJ_G0026377.1 mouse_genomes_project 3 52258326 52264157 - MGP_CASTEiJ_P0060742 Ufm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060743.1 MGP_CASTEiJ_G0026377.1 mouse_genomes_project 3 52259194 52264161 - MGP_CASTEiJ_P0060743 Ufm1 protein_coding protein_coding MGP_CASTEiJ_T0060744.1 MGP_CASTEiJ_G0026377.1 mouse_genomes_project 3 52260015 52264157 - Ufm1 protein_coding retained_intron MGP_CASTEiJ_T0001182.1 MGP_CASTEiJ_G0001113.1 mouse_genomes_project 3 64446078 64448571 + TEC TEC MGP_CASTEiJ_T0060389.1 MGP_CASTEiJ_G0026315.1 mouse_genomes_project 3 31366426 31400754 - MGP_CASTEiJ_P0060389 Ccdc39 protein_coding protein_coding MGP_CASTEiJ_T0060390.1 MGP_CASTEiJ_G0026315.1 mouse_genomes_project 3 31367117 31368621 - Ccdc39 protein_coding retained_intron MGP_CASTEiJ_T0060391.1 MGP_CASTEiJ_G0026315.1 mouse_genomes_project 3 31372730 31400754 - Ccdc39 protein_coding retained_intron MGP_CASTEiJ_T0060392.1 MGP_CASTEiJ_G0026315.1 mouse_genomes_project 3 31374274 31400518 - Ccdc39 protein_coding retained_intron MGP_CASTEiJ_T0060393.1 MGP_CASTEiJ_G0026315.1 mouse_genomes_project 3 31380510 31384179 - Ccdc39 protein_coding retained_intron MGP_CASTEiJ_T0060394.1 MGP_CASTEiJ_G0026315.1 mouse_genomes_project 3 31395582 31400763 - Ccdc39 protein_coding retained_intron MGP_CASTEiJ_T0060008.1 MGP_CASTEiJ_G0026237.1 mouse_genomes_project 3 7686779 7700773 - MGP_CASTEiJ_P0060008 Gm38303 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013668.1 MGP_CASTEiJ_G0011831.1 mouse_genomes_project 3 68566326 68566831 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013568.1 MGP_CASTEiJ_G0011731.1 mouse_genomes_project 3 35133204 35138722 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013596.1 MGP_CASTEiJ_G0011759.1 mouse_genomes_project 3 45305753 45306219 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010218.1 MGP_CASTEiJ_G0008406.1 mouse_genomes_project 3 27058559 27058667 + Mir21b miRNA miRNA MGP_CASTEiJ_T0007430.1 MGP_CASTEiJ_G0006091.1 mouse_genomes_project 3 92130636 92131023 - Gm38201 lincRNA lincRNA MGP_CASTEiJ_T0001280.1 MGP_CASTEiJ_G0001211.1 mouse_genomes_project 3 128340742 128344573 - TEC TEC MGP_CASTEiJ_T0007330.1 MGP_CASTEiJ_G0006022.1 mouse_genomes_project 3 36394085 36395393 + Gm43538 lincRNA lincRNA MGP_CASTEiJ_T0063307.1 MGP_CASTEiJ_G0026966.1 mouse_genomes_project 3 116824220 116988117 - MGP_CASTEiJ_P0063307 Cdc14a protein_coding protein_coding MGP_CASTEiJ_T0063308.1 MGP_CASTEiJ_G0026966.1 mouse_genomes_project 3 116824220 116988071 - MGP_CASTEiJ_P0063308 Cdc14a protein_coding protein_coding MGP_CASTEiJ_T0063309.1 MGP_CASTEiJ_G0026966.1 mouse_genomes_project 3 116875234 116986724 - MGP_CASTEiJ_P0063309 Cdc14a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063310.1 MGP_CASTEiJ_G0026966.1 mouse_genomes_project 3 116880986 116988117 - Cdc14a protein_coding retained_intron MGP_CASTEiJ_T0063311.1 MGP_CASTEiJ_G0026966.1 mouse_genomes_project 3 116958610 116987100 - Cdc14a protein_coding retained_intron MGP_CASTEiJ_T0063312.1 MGP_CASTEiJ_G0026966.1 mouse_genomes_project 3 116961820 116963933 - Cdc14a protein_coding retained_intron MGP_CASTEiJ_T0063313.1 MGP_CASTEiJ_G0026966.1 mouse_genomes_project 3 116962542 116987980 - Cdc14a protein_coding processed_transcript MGP_CASTEiJ_T0004114.1 MGP_CASTEiJ_G0003628.1 mouse_genomes_project 3 51824822 51833135 + Gm16206 antisense antisense MGP_CASTEiJ_T0062117.1 MGP_CASTEiJ_G0026693.1 mouse_genomes_project 3 92725782 92732583 + MGP_CASTEiJ_P0062117 Rptn protein_coding protein_coding MGP_CASTEiJ_T0013622.1 MGP_CASTEiJ_G0011785.1 mouse_genomes_project 3 56258249 56258726 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013803.1 MGP_CASTEiJ_G0011966.1 mouse_genomes_project 3 112880438 112881225 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013742.1 MGP_CASTEiJ_G0011905.1 mouse_genomes_project 3 94824634 94824828 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010245.1 MGP_CASTEiJ_G0008433.1 mouse_genomes_project 3 91190244 91190354 - Gm23697 miRNA miRNA MGP_CASTEiJ_T0063420.1 MGP_CASTEiJ_G0026986.1 mouse_genomes_project 3 122154115 122236042 + MGP_CASTEiJ_P0063420 Alg14 protein_coding protein_coding MGP_CASTEiJ_T0063421.1 MGP_CASTEiJ_G0026986.1 mouse_genomes_project 3 122154140 122186152 + MGP_CASTEiJ_P0063421 Alg14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063422.1 MGP_CASTEiJ_G0026986.1 mouse_genomes_project 3 122154169 122234621 + MGP_CASTEiJ_P0063422 Alg14 protein_coding protein_coding MGP_CASTEiJ_T0063423.1 MGP_CASTEiJ_G0026986.1 mouse_genomes_project 3 122154232 122186615 + MGP_CASTEiJ_P0063423 Alg14 protein_coding protein_coding MGP_CASTEiJ_T0062831.1 MGP_CASTEiJ_G0026855.1 mouse_genomes_project 3 103647009 103700912 - MGP_CASTEiJ_P0062831 Hipk1 protein_coding protein_coding MGP_CASTEiJ_T0062832.1 MGP_CASTEiJ_G0026855.1 mouse_genomes_project 3 103650752 103700415 - MGP_CASTEiJ_P0062832 Hipk1 protein_coding protein_coding MGP_CASTEiJ_T0062833.1 MGP_CASTEiJ_G0026855.1 mouse_genomes_project 3 103650850 103700605 - MGP_CASTEiJ_P0062833 Hipk1 protein_coding protein_coding MGP_CASTEiJ_T0062834.1 MGP_CASTEiJ_G0026855.1 mouse_genomes_project 3 103652345 103700910 - MGP_CASTEiJ_P0062834 Hipk1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062835.1 MGP_CASTEiJ_G0026855.1 mouse_genomes_project 3 103655309 103658250 - Hipk1 protein_coding retained_intron MGP_CASTEiJ_T0062836.1 MGP_CASTEiJ_G0026855.1 mouse_genomes_project 3 103656558 103658199 - Hipk1 protein_coding retained_intron MGP_CASTEiJ_T0062837.1 MGP_CASTEiJ_G0026855.1 mouse_genomes_project 3 103661344 103700624 - Hipk1 protein_coding retained_intron MGP_CASTEiJ_T0001224.1 MGP_CASTEiJ_G0001155.1 mouse_genomes_project 3 97695823 97701238 + TEC TEC MGP_CASTEiJ_T0060644.1 MGP_CASTEiJ_G0026357.1 mouse_genomes_project 3 43289146 43293774 + MGP_CASTEiJ_P0060644 Pcdh10 protein_coding protein_coding MGP_CASTEiJ_T0060645.1 MGP_CASTEiJ_G0026357.1 mouse_genomes_project 3 43289154 43319289 + MGP_CASTEiJ_P0060645 Pcdh10 protein_coding protein_coding MGP_CASTEiJ_T0060646.1 MGP_CASTEiJ_G0026357.1 mouse_genomes_project 3 43289173 43354943 + MGP_CASTEiJ_P0060646 Pcdh10 protein_coding protein_coding MGP_CASTEiJ_T0060647.1 MGP_CASTEiJ_G0026357.1 mouse_genomes_project 3 43289175 43340995 + MGP_CASTEiJ_P0060647 Pcdh10 protein_coding protein_coding MGP_CASTEiJ_T0060648.1 MGP_CASTEiJ_G0026357.1 mouse_genomes_project 3 43293371 43351810 + Pcdh10 protein_coding processed_transcript MGP_CASTEiJ_T0061278.1 MGP_CASTEiJ_G0026497.1 mouse_genomes_project 3 82510581 82520358 - MGP_CASTEiJ_P0061278 Fgb protein_coding protein_coding MGP_CASTEiJ_T0063022.1 MGP_CASTEiJ_G0026897.1 mouse_genomes_project 3 107335362 107337265 + MGP_CASTEiJ_P0063022 Kcna3 protein_coding protein_coding MGP_CASTEiJ_T0007301.1 MGP_CASTEiJ_G0005997.1 mouse_genomes_project 3 28021489 28022873 - lincRNA lincRNA MGP_CASTEiJ_T0013603.1 MGP_CASTEiJ_G0011766.1 mouse_genomes_project 3 48290534 48290856 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100980.1 MGP_CASTEiJ_G0037893.1 mouse_genomes_project 3 95715323 95715450 + Gm22027 snoRNA snoRNA MGP_CASTEiJ_T0010257.1 MGP_CASTEiJ_G0008445.1 mouse_genomes_project 3 117952884 117952949 + Gm22408 miRNA miRNA MGP_CASTEiJ_T0001150.1 MGP_CASTEiJ_G0001082.1 mouse_genomes_project 3 50196281 50198137 - TEC TEC MGP_CASTEiJ_T0001151.1 MGP_CASTEiJ_G0001082.1 mouse_genomes_project 3 50196282 50198137 - TEC pseudogene MGP_CASTEiJ_T0064253.1 MGP_CASTEiJ_G0027138.1 mouse_genomes_project 3 154394749 154398875 - MGP_CASTEiJ_P0064253 Ifi44l protein_coding protein_coding MGP_CASTEiJ_T0060914.1 MGP_CASTEiJ_G0026413.1 mouse_genomes_project 3 57829128 57832119 - MGP_CASTEiJ_P0060914 P2ry13 protein_coding protein_coding MGP_CASTEiJ_T0063965.1 MGP_CASTEiJ_G0027083.1 mouse_genomes_project 3 140025901 140046752 + Adh1 protein_coding processed_transcript MGP_CASTEiJ_T0063966.1 MGP_CASTEiJ_G0027083.1 mouse_genomes_project 3 140039875 140055877 + MGP_CASTEiJ_P0063966 Adh1 protein_coding protein_coding MGP_CASTEiJ_T0063967.1 MGP_CASTEiJ_G0027083.1 mouse_genomes_project 3 140040026 140044989 + Adh1 protein_coding retained_intron MGP_CASTEiJ_T0063968.1 MGP_CASTEiJ_G0027083.1 mouse_genomes_project 3 140040032 140055877 + MGP_CASTEiJ_P0063968 Adh1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060960.1 MGP_CASTEiJ_G0026426.1 mouse_genomes_project 3 61066240 61183763 + MGP_CASTEiJ_P0060960 Arhgef26 protein_coding protein_coding MGP_CASTEiJ_T0060961.1 MGP_CASTEiJ_G0026426.1 mouse_genomes_project 3 61066895 61099319 + Arhgef26 protein_coding processed_transcript MGP_CASTEiJ_T0060962.1 MGP_CASTEiJ_G0026426.1 mouse_genomes_project 3 61067274 61181973 + MGP_CASTEiJ_P0060962 Arhgef26 protein_coding unknown_likely_coding MGP_CASTEiJ_T0060963.1 MGP_CASTEiJ_G0026426.1 mouse_genomes_project 3 61068286 61097715 + Arhgef26 protein_coding retained_intron MGP_CASTEiJ_T0060964.1 MGP_CASTEiJ_G0026426.1 mouse_genomes_project 3 61068996 61100579 + Arhgef26 protein_coding processed_transcript MGP_CASTEiJ_T0060965.1 MGP_CASTEiJ_G0026426.1 mouse_genomes_project 3 61140200 61181754 + MGP_CASTEiJ_P0060965 Arhgef26 protein_coding protein_coding MGP_CASTEiJ_T0060966.1 MGP_CASTEiJ_G0026426.1 mouse_genomes_project 3 61147711 61150543 + Arhgef26 protein_coding retained_intron MGP_CASTEiJ_T0061286.1 MGP_CASTEiJ_G0026500.1 mouse_genomes_project 3 83262783 83270771 + MGP_CASTEiJ_P0061286 Sfrp2 protein_coding protein_coding MGP_CASTEiJ_T0061287.1 MGP_CASTEiJ_G0026500.1 mouse_genomes_project 3 83263027 83266594 + Sfrp2 protein_coding processed_transcript MGP_CASTEiJ_T0061288.1 MGP_CASTEiJ_G0026500.1 mouse_genomes_project 3 83263315 83268605 + Sfrp2 protein_coding processed_transcript MGP_CASTEiJ_T0013893.1 MGP_CASTEiJ_G0012056.1 mouse_genomes_project 3 142014956 142016596 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099718.1 MGP_CASTEiJ_G0036631.1 mouse_genomes_project 3 88705750 88705912 + Gm23054 snRNA snRNA MGP_CASTEiJ_T0007305.1 MGP_CASTEiJ_G0006000.1 mouse_genomes_project 3 31575505 31577679 - Gm43077 lincRNA lincRNA MGP_CASTEiJ_T0013787.1 MGP_CASTEiJ_G0011950.1 mouse_genomes_project 3 108129618 108130234 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062184.1 MGP_CASTEiJ_G0026710.1 mouse_genomes_project 3 94072802 94073291 + MGP_CASTEiJ_P0062184 Gm10972 protein_coding protein_coding MGP_CASTEiJ_T0059947.1 MGP_CASTEiJ_G0026220.1 mouse_genomes_project 3 4559454 4634157 + MGP_CASTEiJ_P0059947 Pkia protein_coding protein_coding MGP_CASTEiJ_T0059948.1 MGP_CASTEiJ_G0026220.1 mouse_genomes_project 3 4559455 4643324 + MGP_CASTEiJ_P0059948 Pkia protein_coding protein_coding MGP_CASTEiJ_T0059949.1 MGP_CASTEiJ_G0026220.1 mouse_genomes_project 3 4623448 4640371 + MGP_CASTEiJ_P0059949 Pkia protein_coding protein_coding MGP_CASTEiJ_T0100959.1 MGP_CASTEiJ_G0037872.1 mouse_genomes_project 3 55559178 55559308 + Gm22269 snoRNA snoRNA MGP_CASTEiJ_T0007380.1 MGP_CASTEiJ_G0006058.1 mouse_genomes_project 3 69687180 69723680 - Gm6634 lincRNA lincRNA MGP_CASTEiJ_T0001201.1 MGP_CASTEiJ_G0001132.1 mouse_genomes_project 3 79983248 79985834 - TEC TEC MGP_CASTEiJ_T0062316.1 MGP_CASTEiJ_G0026732.1 mouse_genomes_project 3 94701202 94711838 - MGP_CASTEiJ_P0062316 Bnipl protein_coding protein_coding MGP_CASTEiJ_T0062317.1 MGP_CASTEiJ_G0026732.1 mouse_genomes_project 3 94701226 94711694 - MGP_CASTEiJ_P0062317 Bnipl protein_coding protein_coding MGP_CASTEiJ_T0062318.1 MGP_CASTEiJ_G0026732.1 mouse_genomes_project 3 94701756 94711781 - MGP_CASTEiJ_P0062318 Bnipl protein_coding protein_coding MGP_CASTEiJ_T0062319.1 MGP_CASTEiJ_G0026732.1 mouse_genomes_project 3 94703656 94711793 - MGP_CASTEiJ_P0062319 Bnipl protein_coding protein_coding MGP_CASTEiJ_T0062320.1 MGP_CASTEiJ_G0026732.1 mouse_genomes_project 3 94705811 94709223 - Bnipl protein_coding retained_intron MGP_CASTEiJ_T0010227.1 MGP_CASTEiJ_G0008415.1 mouse_genomes_project 3 49536203 49536269 + Gm24282 miRNA miRNA MGP_CASTEiJ_T0059994.1 MGP_CASTEiJ_G0026232.1 mouse_genomes_project 3 7534651 7552156 - MGP_CASTEiJ_P0059994 Gm37389 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061332.1 MGP_CASTEiJ_G0026509.1 mouse_genomes_project 3 84130776 84134242 + MGP_CASTEiJ_P0061332 Tigd4 protein_coding protein_coding MGP_CASTEiJ_T0061728.1 MGP_CASTEiJ_G0026582.1 mouse_genomes_project 3 89086433 89094080 + MGP_CASTEiJ_P0061728 Gba protein_coding protein_coding MGP_CASTEiJ_T0061729.1 MGP_CASTEiJ_G0026582.1 mouse_genomes_project 3 89086441 89094082 + MGP_CASTEiJ_P0061729 Gba protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061730.1 MGP_CASTEiJ_G0026582.1 mouse_genomes_project 3 89086445 89094082 + MGP_CASTEiJ_P0061730 Gba protein_coding protein_coding MGP_CASTEiJ_T0061731.1 MGP_CASTEiJ_G0026582.1 mouse_genomes_project 3 89090895 89091799 + Gba protein_coding retained_intron MGP_CASTEiJ_T0061732.1 MGP_CASTEiJ_G0026582.1 mouse_genomes_project 3 89093617 89094367 + Gba protein_coding retained_intron MGP_CASTEiJ_T0061997.1 MGP_CASTEiJ_G0026626.1 mouse_genomes_project 3 90480833 90492497 + Ilf2 protein_coding retained_intron MGP_CASTEiJ_T0061998.1 MGP_CASTEiJ_G0026626.1 mouse_genomes_project 3 90480847 90484020 + Ilf2 protein_coding retained_intron MGP_CASTEiJ_T0061999.1 MGP_CASTEiJ_G0026626.1 mouse_genomes_project 3 90480854 90486996 + Ilf2 protein_coding retained_intron MGP_CASTEiJ_T0062000.1 MGP_CASTEiJ_G0026626.1 mouse_genomes_project 3 90480854 90492913 + MGP_CASTEiJ_P0062000 Ilf2 protein_coding protein_coding MGP_CASTEiJ_T0062001.1 MGP_CASTEiJ_G0026626.1 mouse_genomes_project 3 90480864 90489982 + Ilf2 protein_coding retained_intron MGP_CASTEiJ_T0062002.1 MGP_CASTEiJ_G0026626.1 mouse_genomes_project 3 90485399 90490924 + Ilf2 protein_coding retained_intron MGP_CASTEiJ_T0013626.1 MGP_CASTEiJ_G0011789.1 mouse_genomes_project 3 56880144 56880516 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060067.1 MGP_CASTEiJ_G0026259.1 mouse_genomes_project 3 16388695 16417768 + MGP_CASTEiJ_P0060067 Mtfr1 protein_coding protein_coding MGP_CASTEiJ_T0060068.1 MGP_CASTEiJ_G0026259.1 mouse_genomes_project 3 16388697 16421809 + MGP_CASTEiJ_P0060068 Mtfr1 protein_coding protein_coding MGP_CASTEiJ_T0060069.1 MGP_CASTEiJ_G0026259.1 mouse_genomes_project 3 16388715 16421460 + MGP_CASTEiJ_P0060069 Mtfr1 protein_coding protein_coding MGP_CASTEiJ_T0060070.1 MGP_CASTEiJ_G0026259.1 mouse_genomes_project 3 16389479 16422906 + MGP_CASTEiJ_P0060070 Mtfr1 protein_coding protein_coding MGP_CASTEiJ_T0060071.1 MGP_CASTEiJ_G0026259.1 mouse_genomes_project 3 16389634 16421646 + MGP_CASTEiJ_P0060071 Mtfr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060072.1 MGP_CASTEiJ_G0026259.1 mouse_genomes_project 3 16389643 16417777 + MGP_CASTEiJ_P0060072 Mtfr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060073.1 MGP_CASTEiJ_G0026259.1 mouse_genomes_project 3 16389683 16413620 + MGP_CASTEiJ_P0060073 Mtfr1 protein_coding protein_coding MGP_CASTEiJ_T0060074.1 MGP_CASTEiJ_G0026259.1 mouse_genomes_project 3 16413640 16418296 + Mtfr1 protein_coding retained_intron MGP_CASTEiJ_T0061071.1 MGP_CASTEiJ_G0026449.1 mouse_genomes_project 3 66682204 67435435 + MGP_CASTEiJ_P0061071 Gm21949 protein_coding protein_coding MGP_CASTEiJ_T0007378.1 MGP_CASTEiJ_G0006056.1 mouse_genomes_project 3 67553428 67554589 + Gm35584 lincRNA lincRNA MGP_CASTEiJ_T0063994.1 MGP_CASTEiJ_G0027089.1 mouse_genomes_project 3 140548922 140723903 + MGP_CASTEiJ_P0063994 Tspan5 protein_coding protein_coding MGP_CASTEiJ_T0063995.1 MGP_CASTEiJ_G0027089.1 mouse_genomes_project 3 140549032 140720556 + MGP_CASTEiJ_P0063995 Tspan5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063996.1 MGP_CASTEiJ_G0027089.1 mouse_genomes_project 3 140549232 140712226 + MGP_CASTEiJ_P0063996 Tspan5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063997.1 MGP_CASTEiJ_G0027089.1 mouse_genomes_project 3 140549496 140709845 + MGP_CASTEiJ_P0063997 Tspan5 protein_coding protein_coding MGP_CASTEiJ_T0063998.1 MGP_CASTEiJ_G0027089.1 mouse_genomes_project 3 140588651 140718621 + MGP_CASTEiJ_P0063998 Tspan5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063999.1 MGP_CASTEiJ_G0027089.1 mouse_genomes_project 3 140653085 140720563 + MGP_CASTEiJ_P0063999 Tspan5 protein_coding protein_coding MGP_CASTEiJ_T0061361.1 MGP_CASTEiJ_G0026517.1 mouse_genomes_project 3 85762346 85770274 - MGP_CASTEiJ_P0061361 Rps3a1 protein_coding protein_coding MGP_CASTEiJ_T0061087.1 MGP_CASTEiJ_G0026452.1 mouse_genomes_project 3 67666228 67668571 - MGP_CASTEiJ_P0061087 Gm17641 protein_coding protein_coding MGP_CASTEiJ_T0060180.1 MGP_CASTEiJ_G0026279.1 mouse_genomes_project 3 24695281 24701940 + MGP_CASTEiJ_P0060180 Ghsr protein_coding protein_coding MGP_CASTEiJ_T0013902.1 MGP_CASTEiJ_G0012065.1 mouse_genomes_project 3 146579548 146582180 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013510.1 MGP_CASTEiJ_G0011673.1 mouse_genomes_project 3 13353581 13353756 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060090.1 MGP_CASTEiJ_G0026263.1 mouse_genomes_project 3 16871400 16916562 + MGP_CASTEiJ_P0060090 Trim55 protein_coding protein_coding MGP_CASTEiJ_T0060091.1 MGP_CASTEiJ_G0026263.1 mouse_genomes_project 3 16871434 16878626 + Trim55 protein_coding processed_transcript MGP_CASTEiJ_T0064447.1 MGP_CASTEiJ_G0027166.1 mouse_genomes_project 3 160837908 160867428 - MGP_CASTEiJ_P0064447 Cth protein_coding protein_coding MGP_CASTEiJ_T0064448.1 MGP_CASTEiJ_G0027166.1 mouse_genomes_project 3 160838052 160841753 - Cth protein_coding processed_transcript MGP_CASTEiJ_T0064449.1 MGP_CASTEiJ_G0027166.1 mouse_genomes_project 3 160841345 160849659 - Cth protein_coding retained_intron MGP_CASTEiJ_T0064450.1 MGP_CASTEiJ_G0027166.1 mouse_genomes_project 3 160862041 160867402 - Cth protein_coding retained_intron MGP_CASTEiJ_T0061371.1 MGP_CASTEiJ_G0026520.1 mouse_genomes_project 3 86431048 86579820 - MGP_CASTEiJ_P0061371 Dclk2 protein_coding protein_coding MGP_CASTEiJ_T0061372.1 MGP_CASTEiJ_G0026520.1 mouse_genomes_project 3 86431050 86580293 - MGP_CASTEiJ_P0061372 Dclk2 protein_coding protein_coding MGP_CASTEiJ_T0061373.1 MGP_CASTEiJ_G0026520.1 mouse_genomes_project 3 86431050 86579629 - MGP_CASTEiJ_P0061373 Dclk2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061374.1 MGP_CASTEiJ_G0026520.1 mouse_genomes_project 3 86431056 86579776 - MGP_CASTEiJ_P0061374 Dclk2 protein_coding protein_coding MGP_CASTEiJ_T0061375.1 MGP_CASTEiJ_G0026520.1 mouse_genomes_project 3 86434563 86579611 - MGP_CASTEiJ_P0061375 Dclk2 protein_coding protein_coding MGP_CASTEiJ_T0061376.1 MGP_CASTEiJ_G0026520.1 mouse_genomes_project 3 86434592 86439665 - Dclk2 protein_coding processed_transcript MGP_CASTEiJ_T0061377.1 MGP_CASTEiJ_G0026520.1 mouse_genomes_project 3 86434700 86446473 - Dclk2 protein_coding processed_transcript MGP_CASTEiJ_T0061378.1 MGP_CASTEiJ_G0026520.1 mouse_genomes_project 3 86436695 86445323 - Dclk2 protein_coding processed_transcript MGP_CASTEiJ_T0061379.1 MGP_CASTEiJ_G0026520.1 mouse_genomes_project 3 86446236 86579815 - MGP_CASTEiJ_P0061379 Dclk2 protein_coding protein_coding MGP_CASTEiJ_T0061380.1 MGP_CASTEiJ_G0026520.1 mouse_genomes_project 3 86562895 86579661 - MGP_CASTEiJ_P0061380 Dclk2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0010228.1 MGP_CASTEiJ_G0008416.1 mouse_genomes_project 3 56152099 56152212 + Mir6377 miRNA miRNA MGP_CASTEiJ_T0063300.1 MGP_CASTEiJ_G0026964.1 mouse_genomes_project 3 116649351 116669127 - MGP_CASTEiJ_P0063300 Vcam1 protein_coding protein_coding MGP_CASTEiJ_T0063301.1 MGP_CASTEiJ_G0026964.1 mouse_genomes_project 3 116656107 116660201 - Vcam1 protein_coding retained_intron MGP_CASTEiJ_T0063302.1 MGP_CASTEiJ_G0026964.1 mouse_genomes_project 3 116661749 116668896 - MGP_CASTEiJ_P0063302 Vcam1 protein_coding protein_coding MGP_CASTEiJ_T0063303.1 MGP_CASTEiJ_G0026964.1 mouse_genomes_project 3 116664088 116668350 - MGP_CASTEiJ_P0063303 Vcam1 protein_coding protein_coding MGP_CASTEiJ_T0013672.1 MGP_CASTEiJ_G0011835.1 mouse_genomes_project 3 69313523 69314082 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013499.1 MGP_CASTEiJ_G0011662.1 mouse_genomes_project 3 11296697 11298054 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001103.1 MGP_CASTEiJ_G0001036.1 mouse_genomes_project 3 34203225 34206334 - TEC TEC MGP_CASTEiJ_T0007316.1 MGP_CASTEiJ_G0006010.1 mouse_genomes_project 3 33237048 33248892 - lincRNA lincRNA MGP_CASTEiJ_T0007306.1 MGP_CASTEiJ_G0006001.1 mouse_genomes_project 3 31873738 31932658 - Gm38505 lincRNA lincRNA MGP_CASTEiJ_T0001250.1 MGP_CASTEiJ_G0001181.1 mouse_genomes_project 3 122304411 122307753 - TEC TEC MGP_CASTEiJ_T0098917.1 MGP_CASTEiJ_G0035841.1 mouse_genomes_project 3 104419917 104425973 - Gm43696 sense_intronic sense_intronic MGP_CASTEiJ_T0062707.1 MGP_CASTEiJ_G0026829.1 mouse_genomes_project 3 100741247 100778653 - MGP_CASTEiJ_P0062707 Cd101 protein_coding protein_coding MGP_CASTEiJ_T0062708.1 MGP_CASTEiJ_G0026829.1 mouse_genomes_project 3 100741250 100770749 - MGP_CASTEiJ_P0062708 Cd101 protein_coding protein_coding MGP_CASTEiJ_T0004268.1 MGP_CASTEiJ_G0003731.1 mouse_genomes_project 3 144835820 144836847 - Gm15540 antisense antisense MGP_CASTEiJ_T0007377.1 MGP_CASTEiJ_G0006055.1 mouse_genomes_project 3 67551778 67553367 - 4930535E02Rik lincRNA lincRNA MGP_CASTEiJ_T0060733.1 MGP_CASTEiJ_G0026375.1 mouse_genomes_project 3 51863814 51875732 + Stoml3 protein_coding retained_intron MGP_CASTEiJ_T0060734.1 MGP_CASTEiJ_G0026375.1 mouse_genomes_project 3 51863888 51884563 + MGP_CASTEiJ_P0060734 Stoml3 protein_coding protein_coding MGP_CASTEiJ_T0061851.1 MGP_CASTEiJ_G0026605.1 mouse_genomes_project 3 89653643 89655308 + Adar protein_coding retained_intron MGP_CASTEiJ_T0061852.1 MGP_CASTEiJ_G0026605.1 mouse_genomes_project 3 89653643 89691709 + MGP_CASTEiJ_P0061852 Adar protein_coding protein_coding MGP_CASTEiJ_T0061853.1 MGP_CASTEiJ_G0026605.1 mouse_genomes_project 3 89653953 89673620 + Adar protein_coding processed_transcript MGP_CASTEiJ_T0061854.1 MGP_CASTEiJ_G0026605.1 mouse_genomes_project 3 89669516 89691709 + MGP_CASTEiJ_P0061854 Adar protein_coding protein_coding MGP_CASTEiJ_T0061855.1 MGP_CASTEiJ_G0026605.1 mouse_genomes_project 3 89669516 89689670 + MGP_CASTEiJ_P0061855 Adar protein_coding protein_coding MGP_CASTEiJ_T0061856.1 MGP_CASTEiJ_G0026605.1 mouse_genomes_project 3 89669516 89689670 + MGP_CASTEiJ_P0061856 Adar protein_coding protein_coding MGP_CASTEiJ_T0061857.1 MGP_CASTEiJ_G0026605.1 mouse_genomes_project 3 89669516 89689670 + MGP_CASTEiJ_P0061857 Adar protein_coding protein_coding MGP_CASTEiJ_T0061858.1 MGP_CASTEiJ_G0026605.1 mouse_genomes_project 3 89676051 89677756 + Adar protein_coding retained_intron MGP_CASTEiJ_T0061859.1 MGP_CASTEiJ_G0026605.1 mouse_genomes_project 3 89683990 89685557 + Adar protein_coding retained_intron MGP_CASTEiJ_T0062129.1 MGP_CASTEiJ_G0026700.1 mouse_genomes_project 3 93774043 93776172 + MGP_CASTEiJ_P0062129 C2cd4d protein_coding protein_coding MGP_CASTEiJ_T0062130.1 MGP_CASTEiJ_G0026700.1 mouse_genomes_project 3 93774108 93774770 + C2cd4d protein_coding retained_intron MGP_CASTEiJ_T0062077.1 MGP_CASTEiJ_G0026663.1 mouse_genomes_project 3 91804045 91806036 - MGP_CASTEiJ_P0062077 2310046K23Rik protein_coding protein_coding MGP_CASTEiJ_T0007589.1 MGP_CASTEiJ_G0006221.1 mouse_genomes_project 3 154638309 154643402 + Gm43619 lincRNA lincRNA MGP_CASTEiJ_T0001166.1 MGP_CASTEiJ_G0001097.1 mouse_genomes_project 3 53990113 53993527 + TEC TEC MGP_CASTEiJ_T0010271.1 MGP_CASTEiJ_G0008459.1 mouse_genomes_project 3 139521689 139521770 - Mir6380 miRNA miRNA MGP_CASTEiJ_T0061013.1 MGP_CASTEiJ_G0026436.1 mouse_genomes_project 3 64285619 64313854 + MGP_CASTEiJ_P0061013 Tiparp protein_coding protein_coding MGP_CASTEiJ_T0061014.1 MGP_CASTEiJ_G0026436.1 mouse_genomes_project 3 64285669 64305914 + MGP_CASTEiJ_P0061014 Tiparp protein_coding protein_coding MGP_CASTEiJ_T0061015.1 MGP_CASTEiJ_G0026436.1 mouse_genomes_project 3 64304371 64310952 + Tiparp protein_coding processed_transcript MGP_CASTEiJ_T0001335.1 MGP_CASTEiJ_G0001265.1 mouse_genomes_project 3 156920450 156922706 + TEC TEC MGP_CASTEiJ_T0064215.1 MGP_CASTEiJ_G0027134.1 mouse_genomes_project 3 149207765 149288097 + Ttll7 protein_coding retained_intron MGP_CASTEiJ_T0064216.1 MGP_CASTEiJ_G0027134.1 mouse_genomes_project 3 149207765 149330771 + MGP_CASTEiJ_P0064216 Ttll7 protein_coding protein_coding MGP_CASTEiJ_T0064217.1 MGP_CASTEiJ_G0027134.1 mouse_genomes_project 3 149207765 149332023 + MGP_CASTEiJ_P0064217 Ttll7 protein_coding protein_coding MGP_CASTEiJ_T0064218.1 MGP_CASTEiJ_G0027134.1 mouse_genomes_project 3 149249464 149327775 + MGP_CASTEiJ_P0064218 Ttll7 protein_coding protein_coding MGP_CASTEiJ_T0064219.1 MGP_CASTEiJ_G0027134.1 mouse_genomes_project 3 149251949 149253800 + MGP_CASTEiJ_P0064219 Ttll7 protein_coding protein_coding MGP_CASTEiJ_T0064220.1 MGP_CASTEiJ_G0027134.1 mouse_genomes_project 3 149291803 149329953 + Ttll7 protein_coding retained_intron MGP_CASTEiJ_T0063232.1 MGP_CASTEiJ_G0026950.1 mouse_genomes_project 3 109519084 109568006 + MGP_CASTEiJ_P0063232 Slc25a54 protein_coding protein_coding MGP_CASTEiJ_T0063233.1 MGP_CASTEiJ_G0026950.1 mouse_genomes_project 3 109519114 109567907 + MGP_CASTEiJ_P0063233 Slc25a54 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062541.1 MGP_CASTEiJ_G0026788.1 mouse_genomes_project 3 96256959 96267488 + MGP_CASTEiJ_P0062541 Pias3 protein_coding protein_coding MGP_CASTEiJ_T0062542.1 MGP_CASTEiJ_G0026788.1 mouse_genomes_project 3 96257017 96267000 + MGP_CASTEiJ_P0062542 Pias3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062543.1 MGP_CASTEiJ_G0026788.1 mouse_genomes_project 3 96257650 96260235 + MGP_CASTEiJ_P0062543 Pias3 protein_coding protein_coding MGP_CASTEiJ_T0062544.1 MGP_CASTEiJ_G0026788.1 mouse_genomes_project 3 96257657 96267596 + MGP_CASTEiJ_P0062544 Pias3 protein_coding protein_coding MGP_CASTEiJ_T0062545.1 MGP_CASTEiJ_G0026788.1 mouse_genomes_project 3 96257691 96267499 + MGP_CASTEiJ_P0062545 Pias3 protein_coding protein_coding MGP_CASTEiJ_T0062546.1 MGP_CASTEiJ_G0026788.1 mouse_genomes_project 3 96257707 96260526 + Pias3 protein_coding retained_intron MGP_CASTEiJ_T0062547.1 MGP_CASTEiJ_G0026788.1 mouse_genomes_project 3 96257768 96262235 + MGP_CASTEiJ_P0062547 Pias3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062548.1 MGP_CASTEiJ_G0026788.1 mouse_genomes_project 3 96261021 96265346 + Pias3 protein_coding retained_intron MGP_CASTEiJ_T0062549.1 MGP_CASTEiJ_G0026788.1 mouse_genomes_project 3 96261896 96265411 + Pias3 protein_coding retained_intron MGP_CASTEiJ_T0062550.1 MGP_CASTEiJ_G0026788.1 mouse_genomes_project 3 96265690 96266659 + MGP_CASTEiJ_P0062550 Pias3 protein_coding protein_coding MGP_CASTEiJ_T0011215.1 MGP_CASTEiJ_G0009403.1 mouse_genomes_project 3 95959078 95959501 - Terc misc_RNA misc_RNA MGP_CASTEiJ_T0011222.1 MGP_CASTEiJ_G0009410.1 mouse_genomes_project 3 156360732 156361000 + Gm22136 misc_RNA misc_RNA MGP_CASTEiJ_T0102281.1 MGP_CASTEiJ_G0039006.1 mouse_genomes_project 3 87248598 87249126 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101781.1 MGP_CASTEiJ_G0038562.1 mouse_genomes_project 3 140154688 140161275 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101782.1 MGP_CASTEiJ_G0038562.1 mouse_genomes_project 3 140154688 140163949 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0062752.1 MGP_CASTEiJ_G0026841.1 mouse_genomes_project 3 102576041 102610230 + MGP_CASTEiJ_P0062752 Tspan2 protein_coding protein_coding MGP_CASTEiJ_T0062753.1 MGP_CASTEiJ_G0026841.1 mouse_genomes_project 3 102576303 102610493 + MGP_CASTEiJ_P0062753 Tspan2 protein_coding protein_coding MGP_CASTEiJ_T0062754.1 MGP_CASTEiJ_G0026841.1 mouse_genomes_project 3 102600573 102655078 + MGP_CASTEiJ_P0062754 Tspan2 protein_coding protein_coding MGP_CASTEiJ_T0013530.1 MGP_CASTEiJ_G0011693.1 mouse_genomes_project 3 18870975 18871747 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013751.1 MGP_CASTEiJ_G0011914.1 mouse_genomes_project 3 95957550 95958002 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013597.1 MGP_CASTEiJ_G0011760.1 mouse_genomes_project 3 45547908 45548624 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007500.1 MGP_CASTEiJ_G0006147.1 mouse_genomes_project 3 125248116 125323777 + Gm43731 lincRNA lincRNA MGP_CASTEiJ_T0098926.1 MGP_CASTEiJ_G0035850.1 mouse_genomes_project 3 105747912 105749346 - Gm43328 sense_intronic sense_intronic MGP_CASTEiJ_T0007553.1 MGP_CASTEiJ_G0006196.1 mouse_genomes_project 3 145768353 145770131 + Gm42704 lincRNA lincRNA MGP_CASTEiJ_T0060560.1 MGP_CASTEiJ_G0026347.1 mouse_genomes_project 3 38469797 38484111 + MGP_CASTEiJ_P0060560 Hspa4l protein_coding protein_coding MGP_CASTEiJ_T0060561.1 MGP_CASTEiJ_G0026347.1 mouse_genomes_project 3 38471780 38508686 + MGP_CASTEiJ_P0060561 Hspa4l protein_coding protein_coding MGP_CASTEiJ_T0060562.1 MGP_CASTEiJ_G0026347.1 mouse_genomes_project 3 38471828 38524458 + MGP_CASTEiJ_P0060562 Hspa4l protein_coding protein_coding MGP_CASTEiJ_T0060563.1 MGP_CASTEiJ_G0026347.1 mouse_genomes_project 3 38471882 38487867 + MGP_CASTEiJ_P0060563 Hspa4l protein_coding protein_coding MGP_CASTEiJ_T0060564.1 MGP_CASTEiJ_G0026347.1 mouse_genomes_project 3 38471981 38485637 + Hspa4l protein_coding retained_intron MGP_CASTEiJ_T0060565.1 MGP_CASTEiJ_G0026347.1 mouse_genomes_project 3 38472266 38518051 + MGP_CASTEiJ_P0060565 Hspa4l protein_coding protein_coding MGP_CASTEiJ_T0060566.1 MGP_CASTEiJ_G0026347.1 mouse_genomes_project 3 38499695 38508928 + Hspa4l protein_coding retained_intron MGP_CASTEiJ_T0060567.1 MGP_CASTEiJ_G0026347.1 mouse_genomes_project 3 38511109 38513916 + Hspa4l protein_coding retained_intron MGP_CASTEiJ_T0101580.1 MGP_CASTEiJ_G0038452.1 mouse_genomes_project 3 54364795 54365763 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101581.1 MGP_CASTEiJ_G0038452.1 mouse_genomes_project 3 54364954 54366095 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0063898.1 MGP_CASTEiJ_G0027067.1 mouse_genomes_project 3 137740497 138018333 - MGP_CASTEiJ_P0063898 Bank1 protein_coding protein_coding MGP_CASTEiJ_T0063899.1 MGP_CASTEiJ_G0027067.1 mouse_genomes_project 3 137740497 138018353 - MGP_CASTEiJ_P0063899 Bank1 protein_coding protein_coding MGP_CASTEiJ_T0063900.1 MGP_CASTEiJ_G0027067.1 mouse_genomes_project 3 137740583 138018312 - MGP_CASTEiJ_P0063900 Bank1 protein_coding protein_coding MGP_CASTEiJ_T0063901.1 MGP_CASTEiJ_G0027067.1 mouse_genomes_project 3 137741056 137741856 - Bank1 protein_coding retained_intron MGP_CASTEiJ_T0063902.1 MGP_CASTEiJ_G0027067.1 mouse_genomes_project 3 137741071 137743256 - Bank1 protein_coding retained_intron MGP_CASTEiJ_T0063903.1 MGP_CASTEiJ_G0027067.1 mouse_genomes_project 3 137897305 137936125 - Bank1 protein_coding retained_intron MGP_CASTEiJ_T0010251.1 MGP_CASTEiJ_G0008439.1 mouse_genomes_project 3 95759741 95762709 + miRNA miRNA MGP_CASTEiJ_T0063854.1 MGP_CASTEiJ_G0027063.1 mouse_genomes_project 3 137068050 137098563 + MGP_CASTEiJ_P0063854 Ube2d3 protein_coding protein_coding MGP_CASTEiJ_T0063855.1 MGP_CASTEiJ_G0027063.1 mouse_genomes_project 3 137068133 137099384 + MGP_CASTEiJ_P0063855 Ube2d3 protein_coding protein_coding MGP_CASTEiJ_T0063856.1 MGP_CASTEiJ_G0027063.1 mouse_genomes_project 3 137068215 137098612 + MGP_CASTEiJ_P0063856 Ube2d3 protein_coding protein_coding MGP_CASTEiJ_T0063857.1 MGP_CASTEiJ_G0027063.1 mouse_genomes_project 3 137068379 137100278 + MGP_CASTEiJ_P0063857 Ube2d3 protein_coding protein_coding MGP_CASTEiJ_T0063858.1 MGP_CASTEiJ_G0027063.1 mouse_genomes_project 3 137068428 137071462 + Ube2d3 protein_coding processed_transcript MGP_CASTEiJ_T0063859.1 MGP_CASTEiJ_G0027063.1 mouse_genomes_project 3 137068432 137090952 + MGP_CASTEiJ_P0063859 Ube2d3 protein_coding protein_coding MGP_CASTEiJ_T0063860.1 MGP_CASTEiJ_G0027063.1 mouse_genomes_project 3 137068442 137096359 + MGP_CASTEiJ_P0063860 Ube2d3 protein_coding protein_coding MGP_CASTEiJ_T0063861.1 MGP_CASTEiJ_G0027063.1 mouse_genomes_project 3 137068464 137101524 + MGP_CASTEiJ_P0063861 Ube2d3 protein_coding protein_coding MGP_CASTEiJ_T0063862.1 MGP_CASTEiJ_G0027063.1 mouse_genomes_project 3 137068646 137086205 + MGP_CASTEiJ_P0063862 Ube2d3 protein_coding protein_coding MGP_CASTEiJ_T0063863.1 MGP_CASTEiJ_G0027063.1 mouse_genomes_project 3 137068653 137098623 + MGP_CASTEiJ_P0063863 Ube2d3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063864.1 MGP_CASTEiJ_G0027063.1 mouse_genomes_project 3 137068763 137089108 + Ube2d3 protein_coding retained_intron MGP_CASTEiJ_T0063865.1 MGP_CASTEiJ_G0027063.1 mouse_genomes_project 3 137069037 137100001 + MGP_CASTEiJ_P0063865 Ube2d3 protein_coding protein_coding MGP_CASTEiJ_T0063866.1 MGP_CASTEiJ_G0027063.1 mouse_genomes_project 3 137069111 137100003 + MGP_CASTEiJ_P0063866 Ube2d3 protein_coding protein_coding MGP_CASTEiJ_T0063867.1 MGP_CASTEiJ_G0027063.1 mouse_genomes_project 3 137085581 137090996 + Ube2d3 protein_coding retained_intron MGP_CASTEiJ_T0063868.1 MGP_CASTEiJ_G0027063.1 mouse_genomes_project 3 137089588 137094047 + Ube2d3 protein_coding retained_intron MGP_CASTEiJ_T0063869.1 MGP_CASTEiJ_G0027063.1 mouse_genomes_project 3 137095772 137099848 + Ube2d3 protein_coding retained_intron MGP_CASTEiJ_T0007345.1 MGP_CASTEiJ_G0006030.1 mouse_genomes_project 3 46790016 46793345 - 1700018B24Rik lincRNA lincRNA MGP_CASTEiJ_T0100992.1 MGP_CASTEiJ_G0037905.1 mouse_genomes_project 3 117033843 117033938 + Gm26358 snoRNA snoRNA MGP_CASTEiJ_T0004123.1 MGP_CASTEiJ_G0003635.1 mouse_genomes_project 3 60097444 60102223 - Gm37696 antisense antisense MGP_CASTEiJ_T0062003.1 MGP_CASTEiJ_G0026627.1 mouse_genomes_project 3 90492559 90494950 - Snapin protein_coding retained_intron MGP_CASTEiJ_T0062004.1 MGP_CASTEiJ_G0026627.1 mouse_genomes_project 3 90492567 90495555 - MGP_CASTEiJ_P0062004 Snapin protein_coding protein_coding MGP_CASTEiJ_T0062005.1 MGP_CASTEiJ_G0026627.1 mouse_genomes_project 3 90492903 90495515 - MGP_CASTEiJ_P0062005 Snapin protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062006.1 MGP_CASTEiJ_G0026627.1 mouse_genomes_project 3 90492906 90495546 - MGP_CASTEiJ_P0062006 Snapin protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062007.1 MGP_CASTEiJ_G0026627.1 mouse_genomes_project 3 90493561 90495314 - Snapin protein_coding retained_intron MGP_CASTEiJ_T0099757.1 MGP_CASTEiJ_G0036670.1 mouse_genomes_project 3 140113240 140113487 + Gm23467 snRNA snRNA MGP_CASTEiJ_T0061442.1 MGP_CASTEiJ_G0026534.1 mouse_genomes_project 3 87567971 87600373 - MGP_CASTEiJ_P0061442 Prcc protein_coding protein_coding MGP_CASTEiJ_T0013765.1 MGP_CASTEiJ_G0011928.1 mouse_genomes_project 3 100408523 100408814 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010248.1 MGP_CASTEiJ_G0008436.1 mouse_genomes_project 3 94443937 94444009 + Mir7013 miRNA miRNA MGP_CASTEiJ_T0099707.1 MGP_CASTEiJ_G0036620.1 mouse_genomes_project 3 67349268 67349448 - Gm22073 snRNA snRNA MGP_CASTEiJ_T0013460.1 MGP_CASTEiJ_G0011623.1 mouse_genomes_project 3 952651 952967 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064489.1 MGP_CASTEiJ_G0027170.1 mouse_genomes_project 3 161029632 161308023 - MGP_CASTEiJ_P0064489 Lrrc7 protein_coding protein_coding MGP_CASTEiJ_T0064490.1 MGP_CASTEiJ_G0027170.1 mouse_genomes_project 3 161029636 161531781 - MGP_CASTEiJ_P0064490 Lrrc7 protein_coding protein_coding MGP_CASTEiJ_T0064491.1 MGP_CASTEiJ_G0027170.1 mouse_genomes_project 3 161029871 161308043 - MGP_CASTEiJ_P0064491 Lrrc7 protein_coding protein_coding MGP_CASTEiJ_T0064492.1 MGP_CASTEiJ_G0027170.1 mouse_genomes_project 3 161031194 161531781 - MGP_CASTEiJ_P0064492 Lrrc7 protein_coding protein_coding MGP_CASTEiJ_T0064493.1 MGP_CASTEiJ_G0027170.1 mouse_genomes_project 3 161369322 161530906 - Lrrc7 protein_coding retained_intron MGP_CASTEiJ_T0007541.1 MGP_CASTEiJ_G0006185.1 mouse_genomes_project 3 142871680 142873052 + 4930590L14Rik lincRNA lincRNA MGP_CASTEiJ_T0063091.1 MGP_CASTEiJ_G0026919.1 mouse_genomes_project 3 108325192 108331238 - MGP_CASTEiJ_P0063091 protein_coding protein_coding MGP_CASTEiJ_T0001232.1 MGP_CASTEiJ_G0001163.1 mouse_genomes_project 3 108237966 108239846 + TEC TEC MGP_CASTEiJ_T0063036.1 MGP_CASTEiJ_G0026905.1 mouse_genomes_project 3 107655589 107664842 - MGP_CASTEiJ_P0063036 Rbm15 protein_coding protein_coding MGP_CASTEiJ_T0063037.1 MGP_CASTEiJ_G0026905.1 mouse_genomes_project 3 107657318 107664270 - Rbm15 protein_coding retained_intron MGP_CASTEiJ_T0013700.1 MGP_CASTEiJ_G0011863.1 mouse_genomes_project 3 79385204 79386290 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001072.1 MGP_CASTEiJ_G0001005.1 mouse_genomes_project 3 18068290 18072373 + TEC TEC MGP_CASTEiJ_T0063989.1 MGP_CASTEiJ_G0027088.1 mouse_genomes_project 3 140314807 140351120 + MGP_CASTEiJ_P0063989 Eif4e protein_coding protein_coding MGP_CASTEiJ_T0063990.1 MGP_CASTEiJ_G0027088.1 mouse_genomes_project 3 140315053 140343292 + MGP_CASTEiJ_P0063990 Eif4e protein_coding protein_coding MGP_CASTEiJ_T0063991.1 MGP_CASTEiJ_G0027088.1 mouse_genomes_project 3 140315915 140347638 + MGP_CASTEiJ_P0063991 Eif4e protein_coding protein_coding MGP_CASTEiJ_T0063992.1 MGP_CASTEiJ_G0027088.1 mouse_genomes_project 3 140315915 140343292 + MGP_CASTEiJ_P0063992 Eif4e protein_coding protein_coding MGP_CASTEiJ_T0063993.1 MGP_CASTEiJ_G0027088.1 mouse_genomes_project 3 140340315 140343176 + Eif4e protein_coding retained_intron MGP_CASTEiJ_T0062620.1 MGP_CASTEiJ_G0026804.1 mouse_genomes_project 3 97338096 97375230 - MGP_CASTEiJ_P0062620 Pde4dip protein_coding unknown_likely_coding MGP_CASTEiJ_T0062621.1 MGP_CASTEiJ_G0026804.1 mouse_genomes_project 3 97338098 97549113 - MGP_CASTEiJ_P0062621 Pde4dip protein_coding protein_coding MGP_CASTEiJ_T0062622.1 MGP_CASTEiJ_G0026804.1 mouse_genomes_project 3 97338104 97343300 - Pde4dip protein_coding processed_transcript MGP_CASTEiJ_T0062623.1 MGP_CASTEiJ_G0026804.1 mouse_genomes_project 3 97338139 97549113 - MGP_CASTEiJ_P0062623 Pde4dip protein_coding protein_coding MGP_CASTEiJ_T0062624.1 MGP_CASTEiJ_G0026804.1 mouse_genomes_project 3 97343257 97345543 - Pde4dip protein_coding processed_transcript MGP_CASTEiJ_T0062625.1 MGP_CASTEiJ_G0026804.1 mouse_genomes_project 3 97389857 97420867 - MGP_CASTEiJ_P0062625 Pde4dip protein_coding protein_coding MGP_CASTEiJ_T0062626.1 MGP_CASTEiJ_G0026804.1 mouse_genomes_project 3 97391818 97420789 - MGP_CASTEiJ_P0062626 Pde4dip protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062627.1 MGP_CASTEiJ_G0026804.1 mouse_genomes_project 3 97397392 97525315 - MGP_CASTEiJ_P0062627 Pde4dip protein_coding protein_coding MGP_CASTEiJ_T0062628.1 MGP_CASTEiJ_G0026804.1 mouse_genomes_project 3 97450608 97479394 - MGP_CASTEiJ_P0062628 Pde4dip protein_coding protein_coding MGP_CASTEiJ_T0062629.1 MGP_CASTEiJ_G0026804.1 mouse_genomes_project 3 97475969 97525264 - Pde4dip protein_coding retained_intron MGP_CASTEiJ_T0062091.1 MGP_CASTEiJ_G0026675.1 mouse_genomes_project 3 92047284 92049609 - MGP_CASTEiJ_P0062091 Lce1h protein_coding protein_coding MGP_CASTEiJ_T0010222.1 MGP_CASTEiJ_G0008410.1 mouse_genomes_project 3 32530601 32530708 - Mir6378 miRNA miRNA MGP_CASTEiJ_T0060582.1 MGP_CASTEiJ_G0026350.1 mouse_genomes_project 3 38577884 38580168 + MGP_CASTEiJ_P0060582 1700034I23Rik protein_coding protein_coding MGP_CASTEiJ_T0013461.1 MGP_CASTEiJ_G0011624.1 mouse_genomes_project 3 987307 988082 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007434.1 MGP_CASTEiJ_G0006095.1 mouse_genomes_project 3 94854468 94866735 - lincRNA lincRNA MGP_CASTEiJ_T0007291.1 MGP_CASTEiJ_G0005987.1 mouse_genomes_project 3 18488969 18489689 - Gm29137 lincRNA lincRNA MGP_CASTEiJ_T0061642.1 MGP_CASTEiJ_G0026568.1 mouse_genomes_project 3 88512411 88546246 + MGP_CASTEiJ_P0061642 Rit1 protein_coding protein_coding MGP_CASTEiJ_T0061643.1 MGP_CASTEiJ_G0026568.1 mouse_genomes_project 3 88512481 88533999 + MGP_CASTEiJ_P0061643 Rit1 protein_coding protein_coding MGP_CASTEiJ_T0061644.1 MGP_CASTEiJ_G0026568.1 mouse_genomes_project 3 88512486 88513620 + Rit1 protein_coding retained_intron MGP_CASTEiJ_T0061645.1 MGP_CASTEiJ_G0026568.1 mouse_genomes_project 3 88512499 88543435 + MGP_CASTEiJ_P0061645 Rit1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061646.1 MGP_CASTEiJ_G0026568.1 mouse_genomes_project 3 88512503 88543443 + Rit1 protein_coding retained_intron MGP_CASTEiJ_T0061647.1 MGP_CASTEiJ_G0026568.1 mouse_genomes_project 3 88512504 88541928 + MGP_CASTEiJ_P0061647 Rit1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061648.1 MGP_CASTEiJ_G0026568.1 mouse_genomes_project 3 88512516 88533949 + Rit1 protein_coding retained_intron MGP_CASTEiJ_T0013479.1 MGP_CASTEiJ_G0011642.1 mouse_genomes_project 3 5852696 5853925 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060929.1 MGP_CASTEiJ_G0026420.1 mouse_genomes_project 3 58679417 58696451 + Aadac protein_coding processed_transcript MGP_CASTEiJ_T0060930.1 MGP_CASTEiJ_G0026420.1 mouse_genomes_project 3 58685428 58698107 + MGP_CASTEiJ_P0060930 Aadac protein_coding protein_coding MGP_CASTEiJ_T0060931.1 MGP_CASTEiJ_G0026420.1 mouse_genomes_project 3 58685543 58689797 + Aadac protein_coding retained_intron MGP_CASTEiJ_T0062339.1 MGP_CASTEiJ_G0026736.1 mouse_genomes_project 3 94784211 94792957 + MGP_CASTEiJ_P0062339 Cers2 protein_coding protein_coding MGP_CASTEiJ_T0062340.1 MGP_CASTEiJ_G0026736.1 mouse_genomes_project 3 94784504 94794676 + MGP_CASTEiJ_P0062340 Cers2 protein_coding protein_coding MGP_CASTEiJ_T0062341.1 MGP_CASTEiJ_G0026736.1 mouse_genomes_project 3 94784667 94791849 + Cers2 protein_coding retained_intron MGP_CASTEiJ_T0062342.1 MGP_CASTEiJ_G0026736.1 mouse_genomes_project 3 94784687 94792399 + Cers2 protein_coding retained_intron MGP_CASTEiJ_T0062343.1 MGP_CASTEiJ_G0026736.1 mouse_genomes_project 3 94788435 94791626 + Cers2 protein_coding retained_intron MGP_CASTEiJ_T0062344.1 MGP_CASTEiJ_G0026736.1 mouse_genomes_project 3 94789106 94792118 + MGP_CASTEiJ_P0062344 Cers2 protein_coding protein_coding MGP_CASTEiJ_T0062345.1 MGP_CASTEiJ_G0026736.1 mouse_genomes_project 3 94789876 94793032 + MGP_CASTEiJ_P0062345 Cers2 protein_coding protein_coding MGP_CASTEiJ_T0062346.1 MGP_CASTEiJ_G0026736.1 mouse_genomes_project 3 94791208 94793749 + Cers2 protein_coding retained_intron MGP_CASTEiJ_T0062347.1 MGP_CASTEiJ_G0026736.1 mouse_genomes_project 3 94792015 94793034 + Cers2 protein_coding retained_intron MGP_CASTEiJ_T0062485.1 MGP_CASTEiJ_G0026760.1 mouse_genomes_project 3 95711350 95716527 + MGP_CASTEiJ_P0062485 Sf3b4 protein_coding protein_coding MGP_CASTEiJ_T0062486.1 MGP_CASTEiJ_G0026760.1 mouse_genomes_project 3 95711569 95712369 + Sf3b4 protein_coding retained_intron MGP_CASTEiJ_T0102301.1 MGP_CASTEiJ_G0039026.1 mouse_genomes_project 3 158360256 158361105 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099724.1 MGP_CASTEiJ_G0036637.1 mouse_genomes_project 3 90559660 90559766 + Gm24593 snRNA snRNA MGP_CASTEiJ_T0001308.1 MGP_CASTEiJ_G0001238.1 mouse_genomes_project 3 137053731 137056419 - TEC TEC MGP_CASTEiJ_T0007576.1 MGP_CASTEiJ_G0006214.1 mouse_genomes_project 3 151746008 151793790 + Gm42649 lincRNA lincRNA MGP_CASTEiJ_T0007578.1 MGP_CASTEiJ_G0006214.1 mouse_genomes_project 3 151778118 151780380 + Gm42649 lincRNA lincRNA MGP_CASTEiJ_T0100991.1 MGP_CASTEiJ_G0037904.1 mouse_genomes_project 3 116599110 116599242 - Gm26344 snoRNA snoRNA MGP_CASTEiJ_T0001246.1 MGP_CASTEiJ_G0001177.1 mouse_genomes_project 3 120554993 120556680 - TEC TEC MGP_CASTEiJ_T0061486.1 MGP_CASTEiJ_G0026543.1 mouse_genomes_project 3 87782234 87784217 - MGP_CASTEiJ_P0061486 Apoa1bp protein_coding protein_coding MGP_CASTEiJ_T0062448.1 MGP_CASTEiJ_G0026753.1 mouse_genomes_project 3 95410191 95416776 + MGP_CASTEiJ_P0062448 Aph1a protein_coding protein_coding MGP_CASTEiJ_T0062449.1 MGP_CASTEiJ_G0026753.1 mouse_genomes_project 3 95410492 95415934 + MGP_CASTEiJ_P0062449 Aph1a protein_coding protein_coding MGP_CASTEiJ_T0062450.1 MGP_CASTEiJ_G0026753.1 mouse_genomes_project 3 95410687 95416320 + Aph1a protein_coding retained_intron MGP_CASTEiJ_T0064427.1 MGP_CASTEiJ_G0027162.1 mouse_genomes_project 3 157937988 157947265 + Lrriq3 protein_coding retained_intron MGP_CASTEiJ_T0064428.1 MGP_CASTEiJ_G0027162.1 mouse_genomes_project 3 157937988 158039584 + MGP_CASTEiJ_P0064428 Lrriq3 protein_coding protein_coding MGP_CASTEiJ_T0064429.1 MGP_CASTEiJ_G0027162.1 mouse_genomes_project 3 157938092 158026524 + MGP_CASTEiJ_P0064429 Lrriq3 protein_coding protein_coding MGP_CASTEiJ_T0064430.1 MGP_CASTEiJ_G0027162.1 mouse_genomes_project 3 157938142 157982131 + MGP_CASTEiJ_P0064430 Lrriq3 protein_coding protein_coding MGP_CASTEiJ_T0001239.1 MGP_CASTEiJ_G0001170.1 mouse_genomes_project 3 117109454 117109894 + TEC TEC MGP_CASTEiJ_T0001240.1 MGP_CASTEiJ_G0001171.1 mouse_genomes_project 3 117150814 117153319 - TEC TEC MGP_CASTEiJ_T0099742.1 MGP_CASTEiJ_G0036655.1 mouse_genomes_project 3 108892196 108892319 + Gm23336 snRNA snRNA MGP_CASTEiJ_T0060773.1 MGP_CASTEiJ_G0026382.1 mouse_genomes_project 3 53192449 53199180 - MGP_CASTEiJ_P0060773 Exosc8 protein_coding protein_coding MGP_CASTEiJ_T0060774.1 MGP_CASTEiJ_G0026382.1 mouse_genomes_project 3 53192452 53193232 - Exosc8 protein_coding retained_intron MGP_CASTEiJ_T0060775.1 MGP_CASTEiJ_G0026382.1 mouse_genomes_project 3 53192453 53198824 - Exosc8 protein_coding retained_intron MGP_CASTEiJ_T0060776.1 MGP_CASTEiJ_G0026382.1 mouse_genomes_project 3 53193615 53198590 - Exosc8 protein_coding retained_intron MGP_CASTEiJ_T0060777.1 MGP_CASTEiJ_G0026382.1 mouse_genomes_project 3 53193627 53198101 - MGP_CASTEiJ_P0060777 Exosc8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060778.1 MGP_CASTEiJ_G0026382.1 mouse_genomes_project 3 53195082 53199154 - Exosc8 protein_coding retained_intron MGP_CASTEiJ_T0060779.1 MGP_CASTEiJ_G0026382.1 mouse_genomes_project 3 53195774 53198833 - MGP_CASTEiJ_P0060779 Exosc8 protein_coding protein_coding MGP_CASTEiJ_T0060780.1 MGP_CASTEiJ_G0026382.1 mouse_genomes_project 3 53195923 53198125 - Exosc8 protein_coding retained_intron MGP_CASTEiJ_T0060781.1 MGP_CASTEiJ_G0026382.1 mouse_genomes_project 3 53195933 53197012 - Exosc8 protein_coding retained_intron MGP_CASTEiJ_T0060782.1 MGP_CASTEiJ_G0026382.1 mouse_genomes_project 3 53197389 53198822 - Exosc8 protein_coding retained_intron MGP_CASTEiJ_T0060783.1 MGP_CASTEiJ_G0026382.1 mouse_genomes_project 3 53197730 53198822 - Exosc8 protein_coding retained_intron MGP_CASTEiJ_T0001230.1 MGP_CASTEiJ_G0001161.1 mouse_genomes_project 3 107021872 107028275 + TEC TEC MGP_CASTEiJ_T0010221.1 MGP_CASTEiJ_G0008409.1 mouse_genomes_project 3 32231458 32231537 + Mir1897 miRNA miRNA MGP_CASTEiJ_T0062912.1 MGP_CASTEiJ_G0026871.1 mouse_genomes_project 3 104830281 104832736 + St7l protein_coding retained_intron MGP_CASTEiJ_T0062913.1 MGP_CASTEiJ_G0026871.1 mouse_genomes_project 3 104830779 104900441 + MGP_CASTEiJ_P0062913 St7l protein_coding protein_coding MGP_CASTEiJ_T0062914.1 MGP_CASTEiJ_G0026871.1 mouse_genomes_project 3 104830779 104896681 + MGP_CASTEiJ_P0062914 St7l protein_coding protein_coding MGP_CASTEiJ_T0062915.1 MGP_CASTEiJ_G0026871.1 mouse_genomes_project 3 104831343 104898146 + MGP_CASTEiJ_P0062915 St7l protein_coding protein_coding MGP_CASTEiJ_T0062916.1 MGP_CASTEiJ_G0026871.1 mouse_genomes_project 3 104831347 104898270 + MGP_CASTEiJ_P0062916 St7l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062917.1 MGP_CASTEiJ_G0026871.1 mouse_genomes_project 3 104831356 104856607 + MGP_CASTEiJ_P0062917 St7l protein_coding protein_coding MGP_CASTEiJ_T0062918.1 MGP_CASTEiJ_G0026871.1 mouse_genomes_project 3 104831389 104856539 + St7l protein_coding processed_transcript MGP_CASTEiJ_T0062919.1 MGP_CASTEiJ_G0026871.1 mouse_genomes_project 3 104837267 104889341 + MGP_CASTEiJ_P0062919 St7l protein_coding protein_coding MGP_CASTEiJ_T0062920.1 MGP_CASTEiJ_G0026871.1 mouse_genomes_project 3 104837290 104850177 + St7l protein_coding processed_transcript MGP_CASTEiJ_T0062921.1 MGP_CASTEiJ_G0026871.1 mouse_genomes_project 3 104850080 104889329 + MGP_CASTEiJ_P0062921 St7l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062922.1 MGP_CASTEiJ_G0026871.1 mouse_genomes_project 3 104856124 104862235 + St7l protein_coding retained_intron MGP_CASTEiJ_T0010226.1 MGP_CASTEiJ_G0008414.1 mouse_genomes_project 3 44917266 44917382 - Mir6379 miRNA miRNA MGP_CASTEiJ_T0001218.1 MGP_CASTEiJ_G0001149.1 mouse_genomes_project 3 96286750 96287545 - TEC TEC MGP_CASTEiJ_T0013841.1 MGP_CASTEiJ_G0012004.1 mouse_genomes_project 3 124997131 124998090 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013556.1 MGP_CASTEiJ_G0011719.1 mouse_genomes_project 3 33155887 33156312 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007300.1 MGP_CASTEiJ_G0005996.1 mouse_genomes_project 3 27309468 27348008 + Mannr lincRNA lincRNA MGP_CASTEiJ_T0102287.1 MGP_CASTEiJ_G0039012.1 mouse_genomes_project 3 90954119 90961214 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0064138.1 MGP_CASTEiJ_G0027115.1 mouse_genomes_project 3 147913749 147916772 - MGP_CASTEiJ_P0064138 Cyr61 protein_coding protein_coding MGP_CASTEiJ_T0060326.1 MGP_CASTEiJ_G0026307.1 mouse_genomes_project 3 30063322 30113882 + MGP_CASTEiJ_P0060326 Mfn1 protein_coding protein_coding MGP_CASTEiJ_T0060327.1 MGP_CASTEiJ_G0026307.1 mouse_genomes_project 3 30063388 30080471 + Mfn1 protein_coding retained_intron MGP_CASTEiJ_T0060328.1 MGP_CASTEiJ_G0026307.1 mouse_genomes_project 3 30063396 30080184 + MGP_CASTEiJ_P0060328 Mfn1 protein_coding protein_coding MGP_CASTEiJ_T0060329.1 MGP_CASTEiJ_G0026307.1 mouse_genomes_project 3 30065406 30077643 + MGP_CASTEiJ_P0060329 Mfn1 protein_coding protein_coding MGP_CASTEiJ_T0060330.1 MGP_CASTEiJ_G0026307.1 mouse_genomes_project 3 30065415 30112017 + MGP_CASTEiJ_P0060330 Mfn1 protein_coding protein_coding MGP_CASTEiJ_T0060331.1 MGP_CASTEiJ_G0026307.1 mouse_genomes_project 3 30080019 30098053 + Mfn1 protein_coding retained_intron MGP_CASTEiJ_T0060332.1 MGP_CASTEiJ_G0026307.1 mouse_genomes_project 3 30088025 30098322 + Mfn1 protein_coding retained_intron MGP_CASTEiJ_T0060333.1 MGP_CASTEiJ_G0026307.1 mouse_genomes_project 3 30096457 30105307 + MGP_CASTEiJ_P0060333 Mfn1 protein_coding protein_coding MGP_CASTEiJ_T0060334.1 MGP_CASTEiJ_G0026307.1 mouse_genomes_project 3 30097826 30098720 + Mfn1 protein_coding retained_intron MGP_CASTEiJ_T0060335.1 MGP_CASTEiJ_G0026307.1 mouse_genomes_project 3 30109158 30111821 + Mfn1 protein_coding retained_intron MGP_CASTEiJ_T0063654.1 MGP_CASTEiJ_G0027025.1 mouse_genomes_project 3 130583518 130603236 + MGP_CASTEiJ_P0063654 Pitx2 protein_coding protein_coding MGP_CASTEiJ_T0063655.1 MGP_CASTEiJ_G0027025.1 mouse_genomes_project 3 130583562 130603224 + MGP_CASTEiJ_P0063655 Pitx2 protein_coding protein_coding MGP_CASTEiJ_T0063656.1 MGP_CASTEiJ_G0027025.1 mouse_genomes_project 3 130583566 130603237 + MGP_CASTEiJ_P0063656 Pitx2 protein_coding protein_coding MGP_CASTEiJ_T0063657.1 MGP_CASTEiJ_G0027025.1 mouse_genomes_project 3 130583609 130588209 + MGP_CASTEiJ_P0063657 Pitx2 protein_coding protein_coding MGP_CASTEiJ_T0063658.1 MGP_CASTEiJ_G0027025.1 mouse_genomes_project 3 130587580 130602541 + MGP_CASTEiJ_P0063658 Pitx2 protein_coding protein_coding MGP_CASTEiJ_T0063659.1 MGP_CASTEiJ_G0027025.1 mouse_genomes_project 3 130597559 130600412 + Pitx2 protein_coding retained_intron MGP_CASTEiJ_T0063660.1 MGP_CASTEiJ_G0027025.1 mouse_genomes_project 3 130597599 130603234 + MGP_CASTEiJ_P0063660 Pitx2 protein_coding protein_coding MGP_CASTEiJ_T0063661.1 MGP_CASTEiJ_G0027025.1 mouse_genomes_project 3 130597902 130600262 + MGP_CASTEiJ_P0063661 Pitx2 protein_coding protein_coding MGP_CASTEiJ_T0099758.1 MGP_CASTEiJ_G0036671.1 mouse_genomes_project 3 144867809 144867914 - Gm24457 snRNA snRNA MGP_CASTEiJ_T0013635.1 MGP_CASTEiJ_G0011798.1 mouse_genomes_project 3 58417397 58417797 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062018.1 MGP_CASTEiJ_G0026630.1 mouse_genomes_project 3 90522565 90532293 + MGP_CASTEiJ_P0062018 S100a13 protein_coding protein_coding MGP_CASTEiJ_T0007468.1 MGP_CASTEiJ_G0006124.1 mouse_genomes_project 3 107338698 107354210 + AI504432 lincRNA lincRNA MGP_CASTEiJ_T0010217.1 MGP_CASTEiJ_G0008405.1 mouse_genomes_project 3 26838162 26838260 + Mir551b miRNA miRNA MGP_CASTEiJ_T0004190.1 MGP_CASTEiJ_G0003683.1 mouse_genomes_project 3 102631232 102632698 - Gm42681 antisense antisense MGP_CASTEiJ_T0102292.1 MGP_CASTEiJ_G0039017.1 mouse_genomes_project 3 106215665 106217009 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013724.1 MGP_CASTEiJ_G0011887.1 mouse_genomes_project 3 90738989 90739723 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010273.1 MGP_CASTEiJ_G0008461.1 mouse_genomes_project 3 141860204 141860326 + Mir7j miRNA miRNA MGP_CASTEiJ_T0011219.1 MGP_CASTEiJ_G0009407.1 mouse_genomes_project 3 122206247 122206515 + Gm26027 misc_RNA misc_RNA MGP_CASTEiJ_T0098875.1 MGP_CASTEiJ_G0035800.1 mouse_genomes_project 3 78821024 78821883 - Gm3513 sense_intronic sense_intronic MGP_CASTEiJ_T0001159.1 MGP_CASTEiJ_G0001090.1 mouse_genomes_project 3 51447851 51450479 + TEC TEC MGP_CASTEiJ_T0004146.1 MGP_CASTEiJ_G0003651.1 mouse_genomes_project 3 88405742 88413076 - Gm20652 antisense antisense MGP_CASTEiJ_T0004269.1 MGP_CASTEiJ_G0003732.1 mouse_genomes_project 3 146907509 146908103 + Gm34866 antisense antisense MGP_CASTEiJ_T0010236.1 MGP_CASTEiJ_G0008424.1 mouse_genomes_project 3 87956186 87956273 + Mir3093 miRNA miRNA MGP_CASTEiJ_T0013830.1 MGP_CASTEiJ_G0011993.1 mouse_genomes_project 3 122723263 122723886 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100970.1 MGP_CASTEiJ_G0037883.1 mouse_genomes_project 3 85764022 85764090 - Snord73a snoRNA snoRNA MGP_CASTEiJ_T0010268.1 MGP_CASTEiJ_G0008456.1 mouse_genomes_project 3 135832013 135832092 - Mir1895 miRNA miRNA MGP_CASTEiJ_T0001138.1 MGP_CASTEiJ_G0001071.1 mouse_genomes_project 3 49755096 49757627 - TEC TEC MGP_CASTEiJ_T0100998.1 MGP_CASTEiJ_G0037911.1 mouse_genomes_project 3 129834566 129834675 + Gm22293 snoRNA snoRNA MGP_CASTEiJ_T0100947.1 MGP_CASTEiJ_G0037860.1 mouse_genomes_project 3 31511313 31511445 - Gm23175 snoRNA snoRNA MGP_CASTEiJ_T0098891.1 MGP_CASTEiJ_G0035815.1 mouse_genomes_project 3 100405199 100408359 - sense_intronic sense_intronic MGP_CASTEiJ_T0013476.1 MGP_CASTEiJ_G0011639.1 mouse_genomes_project 3 5088695 5089281 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064266.1 MGP_CASTEiJ_G0027141.1 mouse_genomes_project 3 154846191 154881965 - Dnajb4 protein_coding processed_transcript MGP_CASTEiJ_T0064267.1 MGP_CASTEiJ_G0027141.1 mouse_genomes_project 3 154851433 154864392 - MGP_CASTEiJ_P0064267 Dnajb4 protein_coding protein_coding MGP_CASTEiJ_T0064268.1 MGP_CASTEiJ_G0027141.1 mouse_genomes_project 3 154851460 154881769 - MGP_CASTEiJ_P0064268 Dnajb4 protein_coding protein_coding MGP_CASTEiJ_T0064269.1 MGP_CASTEiJ_G0027141.1 mouse_genomes_project 3 154853300 154881705 - MGP_CASTEiJ_P0064269 Dnajb4 protein_coding protein_coding MGP_CASTEiJ_T0064270.1 MGP_CASTEiJ_G0027141.1 mouse_genomes_project 3 154863923 154881743 - Dnajb4 protein_coding processed_transcript MGP_CASTEiJ_T0064271.1 MGP_CASTEiJ_G0027141.1 mouse_genomes_project 3 154864109 154881743 - MGP_CASTEiJ_P0064271 Dnajb4 protein_coding protein_coding MGP_CASTEiJ_T0064272.1 MGP_CASTEiJ_G0027141.1 mouse_genomes_project 3 154877059 154881988 - Dnajb4 protein_coding retained_intron MGP_CASTEiJ_T0001179.1 MGP_CASTEiJ_G0001110.1 mouse_genomes_project 3 59331144 59334526 + TEC TEC MGP_CASTEiJ_T0013500.1 MGP_CASTEiJ_G0011663.1 mouse_genomes_project 3 11838946 11839425 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098903.1 MGP_CASTEiJ_G0035827.1 mouse_genomes_project 3 103674214 103675614 - Gm43149 sense_intronic sense_intronic MGP_CASTEiJ_T0013542.1 MGP_CASTEiJ_G0011705.1 mouse_genomes_project 3 24630186 24630455 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013850.1 MGP_CASTEiJ_G0012013.1 mouse_genomes_project 3 127563144 127563352 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010234.1 MGP_CASTEiJ_G0008422.1 mouse_genomes_project 3 81532347 81532410 - Mir7010 miRNA miRNA MGP_CASTEiJ_T0060788.1 MGP_CASTEiJ_G0026384.1 mouse_genomes_project 3 53222896 53273761 + MGP_CASTEiJ_P0060788 Smad9 protein_coding protein_coding MGP_CASTEiJ_T0062642.1 MGP_CASTEiJ_G0026810.1 mouse_genomes_project 3 97999356 98029476 - MGP_CASTEiJ_P0062642 Phgdh protein_coding protein_coding MGP_CASTEiJ_T0062643.1 MGP_CASTEiJ_G0026810.1 mouse_genomes_project 3 98008892 98022105 - Phgdh protein_coding retained_intron MGP_CASTEiJ_T0062644.1 MGP_CASTEiJ_G0026810.1 mouse_genomes_project 3 98009433 98016599 - Phgdh protein_coding retained_intron MGP_CASTEiJ_T0062645.1 MGP_CASTEiJ_G0026810.1 mouse_genomes_project 3 98009540 98026083 - MGP_CASTEiJ_P0062645 Phgdh protein_coding protein_coding MGP_CASTEiJ_T0004250.1 MGP_CASTEiJ_G0003721.1 mouse_genomes_project 3 135419257 135678336 - antisense antisense MGP_CASTEiJ_T0004251.1 MGP_CASTEiJ_G0003721.1 mouse_genomes_project 3 135540545 135832003 - antisense antisense MGP_CASTEiJ_T0004252.1 MGP_CASTEiJ_G0003721.1 mouse_genomes_project 3 135736310 135832150 - antisense antisense MGP_CASTEiJ_T0007318.1 MGP_CASTEiJ_G0006012.1 mouse_genomes_project 3 34174896 34182075 - Gm11548 lincRNA lincRNA MGP_CASTEiJ_T0060055.1 MGP_CASTEiJ_G0026252.1 mouse_genomes_project 3 12834680 12845133 - MGP_CASTEiJ_P0060055 protein_coding protein_coding MGP_CASTEiJ_T0004091.1 MGP_CASTEiJ_G0003611.1 mouse_genomes_project 3 30589414 30657029 + 4930419G24Rik antisense antisense MGP_CASTEiJ_T0013847.1 MGP_CASTEiJ_G0012010.1 mouse_genomes_project 3 127563144 127563354 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062619.1 MGP_CASTEiJ_G0026803.1 mouse_genomes_project 3 97319788 97321482 - MGP_CASTEiJ_P0062619 Gm17651 protein_coding protein_coding MGP_CASTEiJ_T0007257.1 MGP_CASTEiJ_G0005967.1 mouse_genomes_project 3 2287667 2292319 + Gm17308 lincRNA lincRNA MGP_CASTEiJ_T0013775.1 MGP_CASTEiJ_G0011938.1 mouse_genomes_project 3 102692381 102692789 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011212.1 MGP_CASTEiJ_G0009400.1 mouse_genomes_project 3 82257885 82258135 - Gm22038 misc_RNA misc_RNA MGP_CASTEiJ_T0004232.1 MGP_CASTEiJ_G0003706.1 mouse_genomes_project 3 123845902 123908085 - 4933405D12Rik antisense antisense MGP_CASTEiJ_T0004233.1 MGP_CASTEiJ_G0003706.1 mouse_genomes_project 3 123864893 123908085 - 4933405D12Rik antisense antisense MGP_CASTEiJ_T0001321.1 MGP_CASTEiJ_G0001251.1 mouse_genomes_project 3 150852515 150853388 + TEC TEC MGP_CASTEiJ_T0062505.1 MGP_CASTEiJ_G0026775.1 mouse_genomes_project 3 95905328 95905970 + MGP_CASTEiJ_P0062505 Hist1h1a protein_coding protein_coding MGP_CASTEiJ_T0013910.1 MGP_CASTEiJ_G0012073.1 mouse_genomes_project 3 149162131 149162787 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001305.1 MGP_CASTEiJ_G0001235.1 mouse_genomes_project 3 134614914 134616678 - TEC TEC MGP_CASTEiJ_T0013739.1 MGP_CASTEiJ_G0011902.1 mouse_genomes_project 3 93873352 93874255 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063947.1 MGP_CASTEiJ_G0027078.1 mouse_genomes_project 3 139831529 139847945 + MGP_CASTEiJ_P0063947 1110002E22Rik protein_coding protein_coding MGP_CASTEiJ_T0063948.1 MGP_CASTEiJ_G0027078.1 mouse_genomes_project 3 139838104 139843802 + 1110002E22Rik protein_coding processed_transcript MGP_CASTEiJ_T0063775.1 MGP_CASTEiJ_G0027049.1 mouse_genomes_project 3 134233583 134394745 + MGP_CASTEiJ_P0063775 Tbck protein_coding protein_coding MGP_CASTEiJ_T0063776.1 MGP_CASTEiJ_G0027049.1 mouse_genomes_project 3 134233607 134250736 + Tbck protein_coding retained_intron MGP_CASTEiJ_T0063777.1 MGP_CASTEiJ_G0027049.1 mouse_genomes_project 3 134233639 134354033 + Tbck protein_coding processed_transcript MGP_CASTEiJ_T0063778.1 MGP_CASTEiJ_G0027049.1 mouse_genomes_project 3 134344095 134391572 + Tbck protein_coding processed_transcript MGP_CASTEiJ_T0007264.1 MGP_CASTEiJ_G0005972.1 mouse_genomes_project 3 6723123 6752625 + C030034L19Rik lincRNA lincRNA MGP_CASTEiJ_T0007265.1 MGP_CASTEiJ_G0005972.1 mouse_genomes_project 3 6723127 6753540 + C030034L19Rik lincRNA lincRNA MGP_CASTEiJ_T0007266.1 MGP_CASTEiJ_G0005972.1 mouse_genomes_project 3 6723139 6734188 + C030034L19Rik lincRNA lincRNA MGP_CASTEiJ_T0001125.1 MGP_CASTEiJ_G0001058.1 mouse_genomes_project 3 45340995 45343716 - TEC TEC MGP_CASTEiJ_T0007583.1 MGP_CASTEiJ_G0006218.1 mouse_genomes_project 3 153900453 153902975 + 4930555A03Rik lincRNA lincRNA MGP_CASTEiJ_T0007584.1 MGP_CASTEiJ_G0006218.1 mouse_genomes_project 3 153900489 153902626 + 4930555A03Rik lincRNA lincRNA MGP_CASTEiJ_T0007585.1 MGP_CASTEiJ_G0006218.1 mouse_genomes_project 3 153900490 153901919 + 4930555A03Rik lincRNA lincRNA MGP_CASTEiJ_T0007586.1 MGP_CASTEiJ_G0006218.1 mouse_genomes_project 3 153901330 153902624 + 4930555A03Rik lincRNA lincRNA MGP_CASTEiJ_T0060658.1 MGP_CASTEiJ_G0026360.1 mouse_genomes_project 3 48135454 48722041 - MGP_CASTEiJ_P0060658 Slc7a11 protein_coding protein_coding MGP_CASTEiJ_T0060659.1 MGP_CASTEiJ_G0026360.1 mouse_genomes_project 3 48638611 48722038 - MGP_CASTEiJ_P0060659 Slc7a11 protein_coding protein_coding MGP_CASTEiJ_T0060660.1 MGP_CASTEiJ_G0026360.1 mouse_genomes_project 3 48643523 48645082 - Slc7a11 protein_coding processed_transcript MGP_CASTEiJ_T0060661.1 MGP_CASTEiJ_G0026360.1 mouse_genomes_project 3 48694582 48722041 - Slc7a11 protein_coding retained_intron MGP_CASTEiJ_T0060662.1 MGP_CASTEiJ_G0026360.1 mouse_genomes_project 3 48719396 48722032 - Slc7a11 protein_coding retained_intron MGP_CASTEiJ_T0013674.1 MGP_CASTEiJ_G0011837.1 mouse_genomes_project 3 70410376 70410817 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060265.1 MGP_CASTEiJ_G0026293.1 mouse_genomes_project 3 28158578 28180697 - MGP_CASTEiJ_P0060265 Lrrc31 protein_coding protein_coding MGP_CASTEiJ_T0060266.1 MGP_CASTEiJ_G0026293.1 mouse_genomes_project 3 28161895 28180710 - MGP_CASTEiJ_P0060266 Lrrc31 protein_coding protein_coding MGP_CASTEiJ_T0060267.1 MGP_CASTEiJ_G0026293.1 mouse_genomes_project 3 28178825 28180635 - Lrrc31 protein_coding retained_intron MGP_CASTEiJ_T0060268.1 MGP_CASTEiJ_G0026293.1 mouse_genomes_project 3 28179000 28180677 - Lrrc31 protein_coding processed_transcript MGP_CASTEiJ_T0062838.1 MGP_CASTEiJ_G0026856.1 mouse_genomes_project 3 103711261 103719762 - MGP_CASTEiJ_P0062838 Dclre1b protein_coding protein_coding MGP_CASTEiJ_T0062839.1 MGP_CASTEiJ_G0026856.1 mouse_genomes_project 3 103713542 103719999 - Dclre1b protein_coding retained_intron MGP_CASTEiJ_T0062840.1 MGP_CASTEiJ_G0026856.1 mouse_genomes_project 3 103713560 103718854 - MGP_CASTEiJ_P0062840 Dclre1b protein_coding protein_coding MGP_CASTEiJ_T0062841.1 MGP_CASTEiJ_G0026856.1 mouse_genomes_project 3 103714256 103718310 - Dclre1b protein_coding retained_intron MGP_CASTEiJ_T0062842.1 MGP_CASTEiJ_G0026856.1 mouse_genomes_project 3 103714684 103719866 - MGP_CASTEiJ_P0062842 Dclre1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062843.1 MGP_CASTEiJ_G0026856.1 mouse_genomes_project 3 103716592 103720063 - MGP_CASTEiJ_P0062843 Dclre1b protein_coding protein_coding MGP_CASTEiJ_T0059940.1 MGP_CASTEiJ_G0026218.1 mouse_genomes_project 3 2785629 2804440 - MGP_CASTEiJ_P0059940 Pex2 protein_coding protein_coding MGP_CASTEiJ_T0059941.1 MGP_CASTEiJ_G0026218.1 mouse_genomes_project 3 2785629 2804440 - MGP_CASTEiJ_P0059941 Pex2 protein_coding protein_coding MGP_CASTEiJ_T0059942.1 MGP_CASTEiJ_G0026218.1 mouse_genomes_project 3 2785940 2789178 - MGP_CASTEiJ_P0059942 Pex2 protein_coding protein_coding MGP_CASTEiJ_T0059943.1 MGP_CASTEiJ_G0026218.1 mouse_genomes_project 3 2785941 2804435 - MGP_CASTEiJ_P0059943 Pex2 protein_coding protein_coding MGP_CASTEiJ_T0059944.1 MGP_CASTEiJ_G0026218.1 mouse_genomes_project 3 2785941 2804530 - MGP_CASTEiJ_P0059944 Pex2 protein_coding protein_coding MGP_CASTEiJ_T0059945.1 MGP_CASTEiJ_G0026218.1 mouse_genomes_project 3 2785945 2804418 - MGP_CASTEiJ_P0059945 Pex2 protein_coding protein_coding MGP_CASTEiJ_T0013490.1 MGP_CASTEiJ_G0011653.1 mouse_genomes_project 3 8154121 8154632 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064014.1 MGP_CASTEiJ_G0027093.1 mouse_genomes_project 3 143415606 143800388 + MGP_CASTEiJ_P0064014 Unc5c protein_coding protein_coding MGP_CASTEiJ_T0064015.1 MGP_CASTEiJ_G0027093.1 mouse_genomes_project 3 143415964 143794971 + MGP_CASTEiJ_P0064015 Unc5c protein_coding protein_coding MGP_CASTEiJ_T0064016.1 MGP_CASTEiJ_G0027093.1 mouse_genomes_project 3 143415989 143621071 + Unc5c protein_coding processed_transcript MGP_CASTEiJ_T0064017.1 MGP_CASTEiJ_G0027093.1 mouse_genomes_project 3 143415989 143421338 + Unc5c protein_coding retained_intron MGP_CASTEiJ_T0064018.1 MGP_CASTEiJ_G0027093.1 mouse_genomes_project 3 143415989 143641507 + Unc5c protein_coding retained_intron MGP_CASTEiJ_T0064019.1 MGP_CASTEiJ_G0027093.1 mouse_genomes_project 3 143415989 143794923 + MGP_CASTEiJ_P0064019 Unc5c protein_coding protein_coding MGP_CASTEiJ_T0064020.1 MGP_CASTEiJ_G0027093.1 mouse_genomes_project 3 143416061 143796008 + MGP_CASTEiJ_P0064020 Unc5c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064021.1 MGP_CASTEiJ_G0027093.1 mouse_genomes_project 3 143755328 143757751 + Unc5c protein_coding retained_intron MGP_CASTEiJ_T0001090.1 MGP_CASTEiJ_G0001023.1 mouse_genomes_project 3 30266190 30266503 - TEC TEC MGP_CASTEiJ_T0099699.1 MGP_CASTEiJ_G0036612.1 mouse_genomes_project 3 57583965 57584067 + Gm22491 snRNA snRNA MGP_CASTEiJ_T0013690.1 MGP_CASTEiJ_G0011853.1 mouse_genomes_project 3 77076598 77076971 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004175.1 MGP_CASTEiJ_G0003672.1 mouse_genomes_project 3 95809094 95813291 - antisense antisense MGP_CASTEiJ_T0004129.1 MGP_CASTEiJ_G0003639.1 mouse_genomes_project 3 64079441 64104890 - A730090N16Rik antisense antisense MGP_CASTEiJ_T0013802.1 MGP_CASTEiJ_G0011965.1 mouse_genomes_project 3 112748500 112748801 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063021.1 MGP_CASTEiJ_G0026896.1 mouse_genomes_project 3 107115571 107116598 - MGP_CASTEiJ_P0063021 Olfr266 protein_coding protein_coding MGP_CASTEiJ_T0100957.1 MGP_CASTEiJ_G0037870.1 mouse_genomes_project 3 54472169 54472301 - Gm22784 snoRNA snoRNA MGP_CASTEiJ_T0013898.1 MGP_CASTEiJ_G0012061.1 mouse_genomes_project 3 144168955 144169295 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061849.1 MGP_CASTEiJ_G0026604.1 mouse_genomes_project 3 89433538 89597629 + MGP_CASTEiJ_P0061849 Kcnn3 protein_coding protein_coding MGP_CASTEiJ_T0061850.1 MGP_CASTEiJ_G0026604.1 mouse_genomes_project 3 89589674 89604979 + Kcnn3 protein_coding retained_intron MGP_CASTEiJ_T0062019.1 MGP_CASTEiJ_G0026631.1 mouse_genomes_project 3 90534561 90535935 + MGP_CASTEiJ_P0062019 S100a14 protein_coding protein_coding MGP_CASTEiJ_T0062020.1 MGP_CASTEiJ_G0026631.1 mouse_genomes_project 3 90534572 90536542 + MGP_CASTEiJ_P0062020 S100a14 protein_coding protein_coding MGP_CASTEiJ_T0062021.1 MGP_CASTEiJ_G0026631.1 mouse_genomes_project 3 90534575 90536542 + MGP_CASTEiJ_P0062021 S100a14 protein_coding protein_coding MGP_CASTEiJ_T0062022.1 MGP_CASTEiJ_G0026631.1 mouse_genomes_project 3 90534577 90536531 + S100a14 protein_coding retained_intron MGP_CASTEiJ_T0062786.1 MGP_CASTEiJ_G0026847.1 mouse_genomes_project 3 102910355 102920591 + MGP_CASTEiJ_P0062786 Nras protein_coding protein_coding MGP_CASTEiJ_T0062787.1 MGP_CASTEiJ_G0026847.1 mouse_genomes_project 3 102910418 102914598 + MGP_CASTEiJ_P0062787 Nras protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062788.1 MGP_CASTEiJ_G0026847.1 mouse_genomes_project 3 102910437 102916448 + MGP_CASTEiJ_P0062788 Nras protein_coding protein_coding MGP_CASTEiJ_T0062789.1 MGP_CASTEiJ_G0026847.1 mouse_genomes_project 3 102910664 102912387 + MGP_CASTEiJ_P0062789 Nras protein_coding protein_coding MGP_CASTEiJ_T0062790.1 MGP_CASTEiJ_G0026847.1 mouse_genomes_project 3 102910666 102915478 + MGP_CASTEiJ_P0062790 Nras protein_coding protein_coding MGP_CASTEiJ_T0062791.1 MGP_CASTEiJ_G0026847.1 mouse_genomes_project 3 102910814 102914597 + MGP_CASTEiJ_P0062791 Nras protein_coding protein_coding MGP_CASTEiJ_T0062792.1 MGP_CASTEiJ_G0026847.1 mouse_genomes_project 3 102910974 102918521 + MGP_CASTEiJ_P0062792 Nras protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062793.1 MGP_CASTEiJ_G0026847.1 mouse_genomes_project 3 102910974 102920583 + MGP_CASTEiJ_P0062793 Nras protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062794.1 MGP_CASTEiJ_G0026847.1 mouse_genomes_project 3 102911059 102915031 + Nras protein_coding retained_intron MGP_CASTEiJ_T0062665.1 MGP_CASTEiJ_G0026819.1 mouse_genomes_project 3 98827092 98911124 + MGP_CASTEiJ_P0062665 Wars2 protein_coding protein_coding MGP_CASTEiJ_T0062666.1 MGP_CASTEiJ_G0026819.1 mouse_genomes_project 3 98827096 98910132 + MGP_CASTEiJ_P0062666 Wars2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062667.1 MGP_CASTEiJ_G0026819.1 mouse_genomes_project 3 98827116 98930487 + MGP_CASTEiJ_P0062667 Wars2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062668.1 MGP_CASTEiJ_G0026819.1 mouse_genomes_project 3 98827119 98907503 + MGP_CASTEiJ_P0062668 Wars2 protein_coding protein_coding MGP_CASTEiJ_T0062669.1 MGP_CASTEiJ_G0026819.1 mouse_genomes_project 3 98827188 98896582 + Wars2 protein_coding retained_intron MGP_CASTEiJ_T0062071.1 MGP_CASTEiJ_G0026657.1 mouse_genomes_project 3 91686619 91687935 + MGP_CASTEiJ_P0062071 protein_coding protein_coding MGP_CASTEiJ_T0061389.1 MGP_CASTEiJ_G0026525.1 mouse_genomes_project 3 87056290 87071604 + MGP_CASTEiJ_P0061389 Fcrl1 protein_coding protein_coding MGP_CASTEiJ_T0061390.1 MGP_CASTEiJ_G0026525.1 mouse_genomes_project 3 87056292 87071997 + MGP_CASTEiJ_P0061390 Fcrl1 protein_coding protein_coding MGP_CASTEiJ_T0061391.1 MGP_CASTEiJ_G0026525.1 mouse_genomes_project 3 87056351 87071998 + MGP_CASTEiJ_P0061391 Fcrl1 protein_coding protein_coding MGP_CASTEiJ_T0061392.1 MGP_CASTEiJ_G0026525.1 mouse_genomes_project 3 87056363 87082926 + MGP_CASTEiJ_P0061392 Fcrl1 protein_coding protein_coding MGP_CASTEiJ_T0061393.1 MGP_CASTEiJ_G0026525.1 mouse_genomes_project 3 87056370 87071618 + MGP_CASTEiJ_P0061393 Fcrl1 protein_coding protein_coding MGP_CASTEiJ_T0061394.1 MGP_CASTEiJ_G0026525.1 mouse_genomes_project 3 87065494 87071962 + Fcrl1 protein_coding retained_intron MGP_CASTEiJ_T0013788.1 MGP_CASTEiJ_G0011951.1 mouse_genomes_project 3 108275020 108275168 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004121.1 MGP_CASTEiJ_G0003633.1 mouse_genomes_project 3 57968734 57975403 + Gm38186 antisense antisense MGP_CASTEiJ_T0004261.1 MGP_CASTEiJ_G0003727.1 mouse_genomes_project 3 139974942 140004010 - 0610031O16Rik antisense antisense MGP_CASTEiJ_T0004262.1 MGP_CASTEiJ_G0003727.1 mouse_genomes_project 3 139982001 140004010 - 0610031O16Rik antisense antisense MGP_CASTEiJ_T0004263.1 MGP_CASTEiJ_G0003727.1 mouse_genomes_project 3 139990843 140004026 - 0610031O16Rik antisense antisense MGP_CASTEiJ_T0004264.1 MGP_CASTEiJ_G0003727.1 mouse_genomes_project 3 139993340 140004752 - 0610031O16Rik antisense antisense MGP_CASTEiJ_T0099705.1 MGP_CASTEiJ_G0036618.1 mouse_genomes_project 3 64893420 64893576 - Gm26442 snRNA snRNA MGP_CASTEiJ_T0001135.1 MGP_CASTEiJ_G0001068.1 mouse_genomes_project 3 49471301 49475245 + TEC TEC MGP_CASTEiJ_T0013701.1 MGP_CASTEiJ_G0011864.1 mouse_genomes_project 3 79708388 79708857 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013601.1 MGP_CASTEiJ_G0011764.1 mouse_genomes_project 3 47872675 47873096 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013698.1 MGP_CASTEiJ_G0011861.1 mouse_genomes_project 3 78121926 78122470 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013504.1 MGP_CASTEiJ_G0011667.1 mouse_genomes_project 3 12054210 12054500 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060934.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59181507 59322485 + MGP_CASTEiJ_P0060934 Mbnl1 protein_coding protein_coding MGP_CASTEiJ_T0060935.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59181719 59330655 + MGP_CASTEiJ_P0060935 Mbnl1 protein_coding protein_coding MGP_CASTEiJ_T0060936.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59181745 59184170 + Mbnl1 protein_coding retained_intron MGP_CASTEiJ_T0060937.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59181751 59349594 + MGP_CASTEiJ_P0060937 Mbnl1 protein_coding protein_coding MGP_CASTEiJ_T0060938.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59181754 59322470 + MGP_CASTEiJ_P0060938 Mbnl1 protein_coding protein_coding MGP_CASTEiJ_T0060939.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59213578 59272746 + Mbnl1 protein_coding processed_transcript MGP_CASTEiJ_T0060940.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59213863 59324878 + Mbnl1 protein_coding retained_intron MGP_CASTEiJ_T0060941.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59213880 59355660 + Mbnl1 protein_coding processed_transcript MGP_CASTEiJ_T0060942.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59213908 59272724 + Mbnl1 protein_coding processed_transcript MGP_CASTEiJ_T0060943.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59213908 59245369 + Mbnl1 protein_coding retained_intron MGP_CASTEiJ_T0060944.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59213921 59359926 + MGP_CASTEiJ_P0060944 Mbnl1 protein_coding protein_coding MGP_CASTEiJ_T0060945.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59241879 59242859 + Mbnl1 protein_coding processed_transcript MGP_CASTEiJ_T0060946.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59242798 59359943 + MGP_CASTEiJ_P0060946 Mbnl1 protein_coding protein_coding MGP_CASTEiJ_T0060947.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59242798 59359378 + MGP_CASTEiJ_P0060947 Mbnl1 protein_coding protein_coding MGP_CASTEiJ_T0060948.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59243316 59347416 + Mbnl1 protein_coding retained_intron MGP_CASTEiJ_T0060949.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59243388 59353310 + Mbnl1 protein_coding processed_transcript MGP_CASTEiJ_T0060950.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59243388 59356223 + MGP_CASTEiJ_P0060950 Mbnl1 protein_coding protein_coding MGP_CASTEiJ_T0060951.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59322361 59341814 + MGP_CASTEiJ_P0060951 Mbnl1 protein_coding protein_coding MGP_CASTEiJ_T0060952.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59322431 59354925 + MGP_CASTEiJ_P0060952 Mbnl1 protein_coding protein_coding MGP_CASTEiJ_T0060953.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59330298 59344184 + Mbnl1 protein_coding retained_intron MGP_CASTEiJ_T0060954.1 MGP_CASTEiJ_G0026422.1 mouse_genomes_project 3 59351413 59354641 + Mbnl1 protein_coding retained_intron MGP_CASTEiJ_T0001248.1 MGP_CASTEiJ_G0001179.1 mouse_genomes_project 3 121886043 121886740 - TEC TEC MGP_CASTEiJ_T0061276.1 MGP_CASTEiJ_G0026496.1 mouse_genomes_project 3 82495828 82501987 + MGP_CASTEiJ_P0061276 Fga protein_coding protein_coding MGP_CASTEiJ_T0061277.1 MGP_CASTEiJ_G0026496.1 mouse_genomes_project 3 82495967 82503352 + MGP_CASTEiJ_P0061277 Fga protein_coding protein_coding MGP_CASTEiJ_T0013806.1 MGP_CASTEiJ_G0011969.1 mouse_genomes_project 3 113682382 113682761 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013579.1 MGP_CASTEiJ_G0011742.1 mouse_genomes_project 3 38634408 38634679 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062055.1 MGP_CASTEiJ_G0026644.1 mouse_genomes_project 3 91194861 91211655 + MGP_CASTEiJ_P0062055 Pglyrp3 protein_coding protein_coding MGP_CASTEiJ_T0013737.1 MGP_CASTEiJ_G0011900.1 mouse_genomes_project 3 92770914 92771466 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001128.1 MGP_CASTEiJ_G0001061.1 mouse_genomes_project 3 48677497 48682839 - TEC TEC MGP_CASTEiJ_T0061302.1 MGP_CASTEiJ_G0026503.1 mouse_genomes_project 3 83605064 83668368 - MGP_CASTEiJ_P0061302 Mnd1 protein_coding protein_coding MGP_CASTEiJ_T0013801.1 MGP_CASTEiJ_G0011964.1 mouse_genomes_project 3 112340647 112341041 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102273.1 MGP_CASTEiJ_G0038998.1 mouse_genomes_project 3 78309179 78309709 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0062308.1 MGP_CASTEiJ_G0026730.1 mouse_genomes_project 3 94684295 94694157 + MGP_CASTEiJ_P0062308 Cdc42se1 protein_coding protein_coding MGP_CASTEiJ_T0062309.1 MGP_CASTEiJ_G0026730.1 mouse_genomes_project 3 94684373 94687988 + Cdc42se1 protein_coding retained_intron MGP_CASTEiJ_T0062310.1 MGP_CASTEiJ_G0026730.1 mouse_genomes_project 3 94684515 94692329 + MGP_CASTEiJ_P0062310 Cdc42se1 protein_coding protein_coding MGP_CASTEiJ_T0062312.1 MGP_CASTEiJ_G0026730.1 mouse_genomes_project 3 94687893 94692287 + MGP_CASTEiJ_P0062312 Cdc42se1 protein_coding protein_coding MGP_CASTEiJ_T0062313.1 MGP_CASTEiJ_G0026730.1 mouse_genomes_project 3 94687899 94692409 + MGP_CASTEiJ_P0062313 Cdc42se1 protein_coding protein_coding MGP_CASTEiJ_T0062715.1 MGP_CASTEiJ_G0026832.1 mouse_genomes_project 3 101144605 101147069 + Igsf3 protein_coding retained_intron MGP_CASTEiJ_T0062716.1 MGP_CASTEiJ_G0026832.1 mouse_genomes_project 3 101144605 101236244 + MGP_CASTEiJ_P0062716 Igsf3 protein_coding protein_coding MGP_CASTEiJ_T0062717.1 MGP_CASTEiJ_G0026832.1 mouse_genomes_project 3 101145855 101233298 + MGP_CASTEiJ_P0062717 Igsf3 protein_coding protein_coding MGP_CASTEiJ_T0064054.1 MGP_CASTEiJ_G0027101.1 mouse_genomes_project 3 144789280 144836693 + MGP_CASTEiJ_P0064054 Kyat3 protein_coding protein_coding MGP_CASTEiJ_T0064055.1 MGP_CASTEiJ_G0027101.1 mouse_genomes_project 3 144789309 144839036 + MGP_CASTEiJ_P0064055 Kyat3 protein_coding protein_coding MGP_CASTEiJ_T0064056.1 MGP_CASTEiJ_G0027101.1 mouse_genomes_project 3 144789315 144816778 + MGP_CASTEiJ_P0064056 Kyat3 protein_coding protein_coding MGP_CASTEiJ_T0064057.1 MGP_CASTEiJ_G0027101.1 mouse_genomes_project 3 144789323 144836498 + MGP_CASTEiJ_P0064057 Kyat3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064058.1 MGP_CASTEiJ_G0027101.1 mouse_genomes_project 3 144813674 144823492 + Kyat3 protein_coding processed_transcript MGP_CASTEiJ_T0064059.1 MGP_CASTEiJ_G0027101.1 mouse_genomes_project 3 144820583 144822556 + Kyat3 protein_coding retained_intron MGP_CASTEiJ_T0064060.1 MGP_CASTEiJ_G0027101.1 mouse_genomes_project 3 144829780 144833116 + Kyat3 protein_coding retained_intron MGP_CASTEiJ_T0064061.1 MGP_CASTEiJ_G0027101.1 mouse_genomes_project 3 144830680 144836496 + Kyat3 protein_coding processed_transcript MGP_CASTEiJ_T0062158.1 MGP_CASTEiJ_G0026707.1 mouse_genomes_project 3 93901122 93914503 + MGP_CASTEiJ_P0062158 Celf3 protein_coding protein_coding MGP_CASTEiJ_T0062159.1 MGP_CASTEiJ_G0026707.1 mouse_genomes_project 3 93901312 93910267 + MGP_CASTEiJ_P0062159 Celf3 protein_coding protein_coding MGP_CASTEiJ_T0062160.1 MGP_CASTEiJ_G0026707.1 mouse_genomes_project 3 93903759 93917094 + MGP_CASTEiJ_P0062160 Celf3 protein_coding protein_coding MGP_CASTEiJ_T0062161.1 MGP_CASTEiJ_G0026707.1 mouse_genomes_project 3 93904006 93917095 + MGP_CASTEiJ_P0062161 Celf3 protein_coding protein_coding MGP_CASTEiJ_T0062162.1 MGP_CASTEiJ_G0026707.1 mouse_genomes_project 3 93904045 93912487 + Celf3 protein_coding retained_intron MGP_CASTEiJ_T0062163.1 MGP_CASTEiJ_G0026707.1 mouse_genomes_project 3 93907498 93912130 + Celf3 protein_coding processed_transcript MGP_CASTEiJ_T0062164.1 MGP_CASTEiJ_G0026707.1 mouse_genomes_project 3 93907665 93917094 + Celf3 protein_coding processed_transcript MGP_CASTEiJ_T0062165.1 MGP_CASTEiJ_G0026707.1 mouse_genomes_project 3 93909275 93917094 + Celf3 protein_coding retained_intron MGP_CASTEiJ_T0062166.1 MGP_CASTEiJ_G0026707.1 mouse_genomes_project 3 93909312 93911858 + MGP_CASTEiJ_P0062166 Celf3 protein_coding protein_coding MGP_CASTEiJ_T0062167.1 MGP_CASTEiJ_G0026707.1 mouse_genomes_project 3 93909319 93912203 + MGP_CASTEiJ_P0062167 Celf3 protein_coding protein_coding MGP_CASTEiJ_T0062168.1 MGP_CASTEiJ_G0026707.1 mouse_genomes_project 3 93910225 93917083 + Celf3 protein_coding retained_intron MGP_CASTEiJ_T0062169.1 MGP_CASTEiJ_G0026707.1 mouse_genomes_project 3 93911564 93913527 + Celf3 protein_coding retained_intron MGP_CASTEiJ_T0062170.1 MGP_CASTEiJ_G0026707.1 mouse_genomes_project 3 93912120 93914512 + Celf3 protein_coding retained_intron MGP_CASTEiJ_T0062101.1 MGP_CASTEiJ_G0026684.1 mouse_genomes_project 3 92228609 92239994 + MGP_CASTEiJ_P0062101 Lce3b protein_coding protein_coding MGP_CASTEiJ_T0013823.1 MGP_CASTEiJ_G0011986.1 mouse_genomes_project 3 118573445 118573885 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013486.1 MGP_CASTEiJ_G0011649.1 mouse_genomes_project 3 7314416 7315230 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001332.1 MGP_CASTEiJ_G0001262.1 mouse_genomes_project 3 155670944 155671930 + TEC TEC MGP_CASTEiJ_T0007368.1 MGP_CASTEiJ_G0006048.1 mouse_genomes_project 3 56715257 56733975 - 1700007F19Rik lincRNA lincRNA MGP_CASTEiJ_T0013928.1 MGP_CASTEiJ_G0012091.1 mouse_genomes_project 3 161920508 161921505 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013714.1 MGP_CASTEiJ_G0011877.1 mouse_genomes_project 3 86683382 86684325 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062135.1 MGP_CASTEiJ_G0026702.1 mouse_genomes_project 3 93813997 93819992 + MGP_CASTEiJ_P0062135 Lingo4 protein_coding protein_coding MGP_CASTEiJ_T0013856.1 MGP_CASTEiJ_G0012019.1 mouse_genomes_project 3 131635686 131636281 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064010.1 MGP_CASTEiJ_G0027091.1 mouse_genomes_project 3 141037105 141529708 + MGP_CASTEiJ_P0064010 Stpg2 protein_coding protein_coding MGP_CASTEiJ_T0064011.1 MGP_CASTEiJ_G0027091.1 mouse_genomes_project 3 141037263 141095274 + MGP_CASTEiJ_P0064011 Stpg2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064012.1 MGP_CASTEiJ_G0027091.1 mouse_genomes_project 3 141037304 141530397 + MGP_CASTEiJ_P0064012 Stpg2 protein_coding protein_coding MGP_CASTEiJ_T0101598.1 MGP_CASTEiJ_G0038461.1 mouse_genomes_project 3 144999989 145000493 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0007599.1 MGP_CASTEiJ_G0006227.1 mouse_genomes_project 3 160634296 160641611 - Gm33466 lincRNA lincRNA MGP_CASTEiJ_T0001237.1 MGP_CASTEiJ_G0001168.1 mouse_genomes_project 3 112320937 112322916 + TEC TEC MGP_CASTEiJ_T0017230.1 MGP_CASTEiJ_G0014829.1 mouse_genomes_project 3 100145739 100148166 + 4930406D18Rik processed_transcript retained_intron MGP_CASTEiJ_T0017231.1 MGP_CASTEiJ_G0014829.1 mouse_genomes_project 3 100145773 100157125 + 4930406D18Rik processed_transcript lincRNA MGP_CASTEiJ_T0099697.1 MGP_CASTEiJ_G0036610.1 mouse_genomes_project 3 56481451 56481551 - Gm24531 snRNA snRNA MGP_CASTEiJ_T0100948.1 MGP_CASTEiJ_G0037861.1 mouse_genomes_project 3 35558509 35558618 - Gm26404 snoRNA snoRNA MGP_CASTEiJ_T0001309.1 MGP_CASTEiJ_G0001239.1 mouse_genomes_project 3 137056701 137065790 - TEC TEC MGP_CASTEiJ_T0101769.1 MGP_CASTEiJ_G0038554.1 mouse_genomes_project 3 26295964 26300642 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0017208.1 MGP_CASTEiJ_G0014819.1 mouse_genomes_project 3 49833816 49840931 + 5031434O11Rik processed_transcript antisense MGP_CASTEiJ_T0017209.1 MGP_CASTEiJ_G0014819.1 mouse_genomes_project 3 49836305 49840919 + 5031434O11Rik processed_transcript antisense MGP_CASTEiJ_T0017210.1 MGP_CASTEiJ_G0014819.1 mouse_genomes_project 3 49837464 49840925 + 5031434O11Rik processed_transcript retained_intron MGP_CASTEiJ_T0011221.1 MGP_CASTEiJ_G0009409.1 mouse_genomes_project 3 127253052 127253320 - Gm26275 misc_RNA misc_RNA MGP_CASTEiJ_T0061869.1 MGP_CASTEiJ_G0026609.1 mouse_genomes_project 3 89807974 89860874 - MGP_CASTEiJ_P0061869 Il6ra protein_coding protein_coding MGP_CASTEiJ_T0061870.1 MGP_CASTEiJ_G0026609.1 mouse_genomes_project 3 89812889 89860840 - MGP_CASTEiJ_P0061870 Il6ra protein_coding protein_coding MGP_CASTEiJ_T0001078.1 MGP_CASTEiJ_G0001011.1 mouse_genomes_project 3 26642284 26643644 + TEC TEC MGP_CASTEiJ_T0013894.1 MGP_CASTEiJ_G0012057.1 mouse_genomes_project 3 142390581 142391133 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013464.1 MGP_CASTEiJ_G0011627.1 mouse_genomes_project 3 1316813 1317990 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001249.1 MGP_CASTEiJ_G0001180.1 mouse_genomes_project 3 122023082 122025718 + TEC TEC MGP_CASTEiJ_T0007444.1 MGP_CASTEiJ_G0006104.1 mouse_genomes_project 3 97553752 97564349 - Gm15999 lincRNA lincRNA MGP_CASTEiJ_T0004105.1 MGP_CASTEiJ_G0003620.1 mouse_genomes_project 3 36791992 36793086 - Gm43539 antisense antisense MGP_CASTEiJ_T0061223.1 MGP_CASTEiJ_G0026483.1 mouse_genomes_project 3 80018048 80146468 - MGP_CASTEiJ_P0061223 Gria2 protein_coding protein_coding MGP_CASTEiJ_T0061224.1 MGP_CASTEiJ_G0026483.1 mouse_genomes_project 3 80025507 80146468 - MGP_CASTEiJ_P0061224 Gria2 protein_coding protein_coding MGP_CASTEiJ_T0061225.1 MGP_CASTEiJ_G0026483.1 mouse_genomes_project 3 80025752 80146212 - MGP_CASTEiJ_P0061225 Gria2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061226.1 MGP_CASTEiJ_G0026483.1 mouse_genomes_project 3 80028987 80146424 - Gria2 protein_coding retained_intron MGP_CASTEiJ_T0061227.1 MGP_CASTEiJ_G0026483.1 mouse_genomes_project 3 80043555 80146283 - Gria2 protein_coding retained_intron MGP_CASTEiJ_T0061228.1 MGP_CASTEiJ_G0026483.1 mouse_genomes_project 3 80046153 80146357 - Gria2 protein_coding retained_intron MGP_CASTEiJ_T0061229.1 MGP_CASTEiJ_G0026483.1 mouse_genomes_project 3 80047394 80146413 - Gria2 protein_coding retained_intron MGP_CASTEiJ_T0061230.1 MGP_CASTEiJ_G0026483.1 mouse_genomes_project 3 80142444 80146326 - Gria2 protein_coding retained_intron MGP_CASTEiJ_T0060751.1 MGP_CASTEiJ_G0026379.1 mouse_genomes_project 3 52795252 52826321 + MGP_CASTEiJ_P0060751 Postn protein_coding protein_coding MGP_CASTEiJ_T0060752.1 MGP_CASTEiJ_G0026379.1 mouse_genomes_project 3 52795252 52826324 + MGP_CASTEiJ_P0060752 Postn protein_coding protein_coding MGP_CASTEiJ_T0060753.1 MGP_CASTEiJ_G0026379.1 mouse_genomes_project 3 52795268 52826321 + MGP_CASTEiJ_P0060753 Postn protein_coding protein_coding MGP_CASTEiJ_T0060754.1 MGP_CASTEiJ_G0026379.1 mouse_genomes_project 3 52795286 52825740 + MGP_CASTEiJ_P0060754 Postn protein_coding protein_coding MGP_CASTEiJ_T0060755.1 MGP_CASTEiJ_G0026379.1 mouse_genomes_project 3 52811712 52825935 + MGP_CASTEiJ_P0060755 Postn protein_coding protein_coding MGP_CASTEiJ_T0060756.1 MGP_CASTEiJ_G0026379.1 mouse_genomes_project 3 52812632 52818851 + Postn protein_coding retained_intron MGP_CASTEiJ_T0060757.1 MGP_CASTEiJ_G0026379.1 mouse_genomes_project 3 52817253 52825775 + Postn protein_coding retained_intron MGP_CASTEiJ_T0060758.1 MGP_CASTEiJ_G0026379.1 mouse_genomes_project 3 52817255 52825870 + Postn protein_coding retained_intron MGP_CASTEiJ_T0060759.1 MGP_CASTEiJ_G0026379.1 mouse_genomes_project 3 52824176 52825681 + Postn protein_coding retained_intron MGP_CASTEiJ_T0013539.1 MGP_CASTEiJ_G0011702.1 mouse_genomes_project 3 24314438 24314549 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062064.1 MGP_CASTEiJ_G0026651.1 mouse_genomes_project 3 91563411 91566282 + MGP_CASTEiJ_P0062064 Sprr2b protein_coding protein_coding MGP_CASTEiJ_T0062314.1 MGP_CASTEiJ_G0026731.1 mouse_genomes_project 3 94694667 94701530 - MGP_CASTEiJ_P0062314 Gm128 protein_coding protein_coding MGP_CASTEiJ_T0062315.1 MGP_CASTEiJ_G0026731.1 mouse_genomes_project 3 94694854 94701530 - MGP_CASTEiJ_P0062315 Gm128 protein_coding protein_coding MGP_CASTEiJ_T0100990.1 MGP_CASTEiJ_G0037903.1 mouse_genomes_project 3 115312559 115312691 - Gm23750 snoRNA snoRNA MGP_CASTEiJ_T0013783.1 MGP_CASTEiJ_G0011946.1 mouse_genomes_project 3 104883918 104884173 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061866.1 MGP_CASTEiJ_G0026608.1 mouse_genomes_project 3 89772317 89802920 + MGP_CASTEiJ_P0061866 She protein_coding protein_coding MGP_CASTEiJ_T0061867.1 MGP_CASTEiJ_G0026608.1 mouse_genomes_project 3 89772380 89804869 + MGP_CASTEiJ_P0061867 She protein_coding unknown_likely_coding MGP_CASTEiJ_T0061868.1 MGP_CASTEiJ_G0026608.1 mouse_genomes_project 3 89779546 89780948 + She protein_coding retained_intron MGP_CASTEiJ_T0013561.1 MGP_CASTEiJ_G0011724.1 mouse_genomes_project 3 34089058 34089605 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060653.1 MGP_CASTEiJ_G0026359.1 mouse_genomes_project 3 47978205 47992202 - MGP_CASTEiJ_P0060653 Pcdh18 protein_coding protein_coding MGP_CASTEiJ_T0060654.1 MGP_CASTEiJ_G0026359.1 mouse_genomes_project 3 47978207 47992171 - MGP_CASTEiJ_P0060654 Pcdh18 protein_coding protein_coding MGP_CASTEiJ_T0060655.1 MGP_CASTEiJ_G0026359.1 mouse_genomes_project 3 47980181 47992211 - Pcdh18 protein_coding processed_transcript MGP_CASTEiJ_T0060656.1 MGP_CASTEiJ_G0026359.1 mouse_genomes_project 3 47987299 47990350 - MGP_CASTEiJ_P0060656 Pcdh18 protein_coding protein_coding MGP_CASTEiJ_T0060657.1 MGP_CASTEiJ_G0026359.1 mouse_genomes_project 3 47989711 47992169 - Pcdh18 protein_coding processed_transcript MGP_CASTEiJ_T0100972.1 MGP_CASTEiJ_G0037885.1 mouse_genomes_project 3 85904931 85905062 - Gm26343 snoRNA snoRNA MGP_CASTEiJ_T0001062.1 MGP_CASTEiJ_G0000995.1 mouse_genomes_project 3 5989009 5992130 - TEC TEC MGP_CASTEiJ_T0098911.1 MGP_CASTEiJ_G0035835.1 mouse_genomes_project 3 104062675 104066839 - Gm42702 sense_intronic sense_intronic MGP_CASTEiJ_T0063526.1 MGP_CASTEiJ_G0027005.1 mouse_genomes_project 3 124380392 124397641 - MGP_CASTEiJ_P0063526 Mettl14 protein_coding protein_coding MGP_CASTEiJ_T0063527.1 MGP_CASTEiJ_G0027005.1 mouse_genomes_project 3 124380392 124397818 - MGP_CASTEiJ_P0063527 Mettl14 protein_coding protein_coding MGP_CASTEiJ_T0063528.1 MGP_CASTEiJ_G0027005.1 mouse_genomes_project 3 124380392 124397695 - MGP_CASTEiJ_P0063528 Mettl14 protein_coding protein_coding MGP_CASTEiJ_T0063529.1 MGP_CASTEiJ_G0027005.1 mouse_genomes_project 3 124381587 124386558 - MGP_CASTEiJ_P0063529 Mettl14 protein_coding protein_coding MGP_CASTEiJ_T0063530.1 MGP_CASTEiJ_G0027005.1 mouse_genomes_project 3 124397426 124397808 - Mettl14 protein_coding retained_intron MGP_CASTEiJ_T0064399.1 MGP_CASTEiJ_G0027157.1 mouse_genomes_project 3 157395433 157409822 - Tyw3 protein_coding processed_transcript MGP_CASTEiJ_T0064400.1 MGP_CASTEiJ_G0027157.1 mouse_genomes_project 3 157395666 157412313 - MGP_CASTEiJ_P0064400 Tyw3 protein_coding protein_coding MGP_CASTEiJ_T0064401.1 MGP_CASTEiJ_G0027157.1 mouse_genomes_project 3 157403165 157412391 - MGP_CASTEiJ_P0064401 Tyw3 protein_coding protein_coding MGP_CASTEiJ_T0013688.1 MGP_CASTEiJ_G0011851.1 mouse_genomes_project 3 76046985 76047820 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001073.1 MGP_CASTEiJ_G0001006.1 mouse_genomes_project 3 19974146 19974397 + TEC TEC MGP_CASTEiJ_T0062087.1 MGP_CASTEiJ_G0026671.1 mouse_genomes_project 3 91965122 91966751 + MGP_CASTEiJ_P0062087 Lce1c protein_coding protein_coding MGP_CASTEiJ_T0010232.1 MGP_CASTEiJ_G0008420.1 mouse_genomes_project 3 72132193 72132303 + Gm24544 miRNA miRNA MGP_CASTEiJ_T0007572.1 MGP_CASTEiJ_G0006212.1 mouse_genomes_project 3 151656777 151660861 - Gm10287 lincRNA lincRNA MGP_CASTEiJ_T0007573.1 MGP_CASTEiJ_G0006212.1 mouse_genomes_project 3 151656783 151660861 - Gm10287 lincRNA lincRNA MGP_CASTEiJ_T0099681.1 MGP_CASTEiJ_G0036594.1 mouse_genomes_project 3 15039955 15040082 - Gm23441 snRNA snRNA MGP_CASTEiJ_T0013727.1 MGP_CASTEiJ_G0011890.1 mouse_genomes_project 3 91570640 91570777 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004152.1 MGP_CASTEiJ_G0003657.1 mouse_genomes_project 3 89292009 89298748 + Gm15417 antisense antisense MGP_CASTEiJ_T0004153.1 MGP_CASTEiJ_G0003657.1 mouse_genomes_project 3 89292129 89298748 + Gm15417 antisense antisense MGP_CASTEiJ_T0004154.1 MGP_CASTEiJ_G0003657.1 mouse_genomes_project 3 89294799 89299143 + Gm15417 antisense antisense MGP_CASTEiJ_T0004155.1 MGP_CASTEiJ_G0003657.1 mouse_genomes_project 3 89296495 89298670 + Gm15417 antisense antisense MGP_CASTEiJ_T0060874.1 MGP_CASTEiJ_G0026402.1 mouse_genomes_project 3 56988671 57042375 + MGP_CASTEiJ_P0060874 Tsc22d2 protein_coding protein_coding MGP_CASTEiJ_T0060875.1 MGP_CASTEiJ_G0026402.1 mouse_genomes_project 3 56988676 57037306 + MGP_CASTEiJ_P0060875 Tsc22d2 protein_coding protein_coding MGP_CASTEiJ_T0060876.1 MGP_CASTEiJ_G0026402.1 mouse_genomes_project 3 56989837 56992863 + Tsc22d2 protein_coding retained_intron MGP_CASTEiJ_T0060877.1 MGP_CASTEiJ_G0026402.1 mouse_genomes_project 3 56991449 57035893 + MGP_CASTEiJ_P0060877 Tsc22d2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062502.1 MGP_CASTEiJ_G0026773.1 mouse_genomes_project 3 95851006 95880082 - MGP_CASTEiJ_P0062502 Fcgr1 protein_coding protein_coding MGP_CASTEiJ_T0062503.1 MGP_CASTEiJ_G0026773.1 mouse_genomes_project 3 95852565 95860667 - MGP_CASTEiJ_P0062503 Fcgr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060457.1 MGP_CASTEiJ_G0026328.1 mouse_genomes_project 3 34230046 34240581 + MGP_CASTEiJ_P0060457 Exosc9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060458.1 MGP_CASTEiJ_G0026328.1 mouse_genomes_project 3 34230046 34243069 + MGP_CASTEiJ_P0060458 Exosc9 protein_coding protein_coding MGP_CASTEiJ_T0060459.1 MGP_CASTEiJ_G0026328.1 mouse_genomes_project 3 34230054 34234206 + Exosc9 protein_coding retained_intron MGP_CASTEiJ_T0060460.1 MGP_CASTEiJ_G0026328.1 mouse_genomes_project 3 34230067 34234427 + Exosc9 protein_coding retained_intron MGP_CASTEiJ_T0060461.1 MGP_CASTEiJ_G0026328.1 mouse_genomes_project 3 34230078 34234381 + MGP_CASTEiJ_P0060461 Exosc9 protein_coding protein_coding MGP_CASTEiJ_T0060462.1 MGP_CASTEiJ_G0026328.1 mouse_genomes_project 3 34230091 34238823 + Exosc9 protein_coding retained_intron MGP_CASTEiJ_T0060463.1 MGP_CASTEiJ_G0026328.1 mouse_genomes_project 3 34232982 34240556 + MGP_CASTEiJ_P0060463 Exosc9 protein_coding protein_coding MGP_CASTEiJ_T0060464.1 MGP_CASTEiJ_G0026328.1 mouse_genomes_project 3 34239610 34242987 + MGP_CASTEiJ_P0060464 Exosc9 protein_coding protein_coding MGP_CASTEiJ_T0013501.1 MGP_CASTEiJ_G0011664.1 mouse_genomes_project 3 11874133 11886643 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001089.1 MGP_CASTEiJ_G0001022.1 mouse_genomes_project 3 29980928 29981987 + TEC TEC MGP_CASTEiJ_T0099739.1 MGP_CASTEiJ_G0036652.1 mouse_genomes_project 3 104019318 104019420 + Gm23830 snRNA snRNA MGP_CASTEiJ_T0001214.1 MGP_CASTEiJ_G0001145.1 mouse_genomes_project 3 95123259 95125095 + TEC TEC MGP_CASTEiJ_T0063678.1 MGP_CASTEiJ_G0027029.1 mouse_genomes_project 3 131241072 131258109 - MGP_CASTEiJ_P0063678 Lrit3 protein_coding protein_coding MGP_CASTEiJ_T0063679.1 MGP_CASTEiJ_G0027029.1 mouse_genomes_project 3 131241483 131258109 - MGP_CASTEiJ_P0063679 Lrit3 protein_coding protein_coding MGP_CASTEiJ_T0063680.1 MGP_CASTEiJ_G0027029.1 mouse_genomes_project 3 131243923 131254572 - Lrit3 protein_coding retained_intron MGP_CASTEiJ_T0007582.1 MGP_CASTEiJ_G0006217.1 mouse_genomes_project 3 153677629 153680811 + Gm43468 lincRNA lincRNA MGP_CASTEiJ_T0063237.1 MGP_CASTEiJ_G0026952.1 mouse_genomes_project 3 109807297 110165320 + MGP_CASTEiJ_P0063237 Vav3 protein_coding protein_coding MGP_CASTEiJ_T0063238.1 MGP_CASTEiJ_G0026952.1 mouse_genomes_project 3 109807327 110046598 + Vav3 protein_coding retained_intron MGP_CASTEiJ_T0063239.1 MGP_CASTEiJ_G0026952.1 mouse_genomes_project 3 109807750 109922331 + Vav3 protein_coding processed_transcript MGP_CASTEiJ_T0063240.1 MGP_CASTEiJ_G0026952.1 mouse_genomes_project 3 109976983 109986833 + Vav3 protein_coding processed_transcript MGP_CASTEiJ_T0063241.1 MGP_CASTEiJ_G0026952.1 mouse_genomes_project 3 110056952 110165316 + MGP_CASTEiJ_P0063241 Vav3 protein_coding protein_coding MGP_CASTEiJ_T0063242.1 MGP_CASTEiJ_G0026952.1 mouse_genomes_project 3 110127877 110162522 + Vav3 protein_coding processed_transcript MGP_CASTEiJ_T0063325.1 MGP_CASTEiJ_G0026970.1 mouse_genomes_project 3 117159759 117192536 - MGP_CASTEiJ_P0063325 Trmt13 protein_coding protein_coding MGP_CASTEiJ_T0063326.1 MGP_CASTEiJ_G0026970.1 mouse_genomes_project 3 117159760 117173430 - MGP_CASTEiJ_P0063326 Trmt13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063327.1 MGP_CASTEiJ_G0026970.1 mouse_genomes_project 3 117159761 117173454 - MGP_CASTEiJ_P0063327 Trmt13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063328.1 MGP_CASTEiJ_G0026970.1 mouse_genomes_project 3 117160002 117162135 - Trmt13 protein_coding processed_transcript MGP_CASTEiJ_T0063329.1 MGP_CASTEiJ_G0026970.1 mouse_genomes_project 3 117162771 117173488 - Trmt13 protein_coding retained_intron MGP_CASTEiJ_T0063330.1 MGP_CASTEiJ_G0026970.1 mouse_genomes_project 3 117164452 117173279 - MGP_CASTEiJ_P0063330 Trmt13 protein_coding protein_coding MGP_CASTEiJ_T0063331.1 MGP_CASTEiJ_G0026970.1 mouse_genomes_project 3 117168186 117173262 - MGP_CASTEiJ_P0063331 Trmt13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063332.1 MGP_CASTEiJ_G0026970.1 mouse_genomes_project 3 117170610 117173395 - Trmt13 protein_coding retained_intron MGP_CASTEiJ_T0063333.1 MGP_CASTEiJ_G0026970.1 mouse_genomes_project 3 117172565 117173432 - MGP_CASTEiJ_P0063333 Trmt13 protein_coding protein_coding MGP_CASTEiJ_T0063338.1 MGP_CASTEiJ_G0026970.1 mouse_genomes_project 3 117173994 117192070 - Trmt13 protein_coding processed_transcript MGP_CASTEiJ_T0063340.1 MGP_CASTEiJ_G0026970.1 mouse_genomes_project 3 117191482 117192357 - Trmt13 protein_coding retained_intron MGP_CASTEiJ_T0061068.1 MGP_CASTEiJ_G0026447.1 mouse_genomes_project 3 66361020 66383557 + MGP_CASTEiJ_P0061068 Mfsd1 protein_coding protein_coding MGP_CASTEiJ_T0061069.1 MGP_CASTEiJ_G0026447.1 mouse_genomes_project 3 66363017 66374078 + Mfsd1 protein_coding processed_transcript MGP_CASTEiJ_T0062497.1 MGP_CASTEiJ_G0026768.1 mouse_genomes_project 3 95812556 95815558 + MGP_CASTEiJ_P0062497 Hist2h3c1 protein_coding protein_coding MGP_CASTEiJ_T0060429.1 MGP_CASTEiJ_G0026321.1 mouse_genomes_project 3 33598020 33638889 - MGP_CASTEiJ_P0060429 Mccc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060430.1 MGP_CASTEiJ_G0026321.1 mouse_genomes_project 3 33598539 33638958 - MGP_CASTEiJ_P0060430 Mccc1 protein_coding protein_coding MGP_CASTEiJ_T0060431.1 MGP_CASTEiJ_G0026321.1 mouse_genomes_project 3 33598545 33599820 - Mccc1 protein_coding retained_intron MGP_CASTEiJ_T0060432.1 MGP_CASTEiJ_G0026321.1 mouse_genomes_project 3 33600438 33607788 - Mccc1 protein_coding retained_intron MGP_CASTEiJ_T0060433.1 MGP_CASTEiJ_G0026321.1 mouse_genomes_project 3 33612058 33634108 - Mccc1 protein_coding retained_intron MGP_CASTEiJ_T0060434.1 MGP_CASTEiJ_G0026321.1 mouse_genomes_project 3 33613869 33615294 - Mccc1 protein_coding retained_intron MGP_CASTEiJ_T0060435.1 MGP_CASTEiJ_G0026321.1 mouse_genomes_project 3 33614502 33628560 - MGP_CASTEiJ_P0060435 Mccc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060436.1 MGP_CASTEiJ_G0026321.1 mouse_genomes_project 3 33623567 33638921 - MGP_CASTEiJ_P0060436 Mccc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0013657.1 MGP_CASTEiJ_G0011820.1 mouse_genomes_project 3 64934410 64935169 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013789.1 MGP_CASTEiJ_G0011952.1 mouse_genomes_project 3 108341057 108341294 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061846.1 MGP_CASTEiJ_G0026603.1 mouse_genomes_project 3 89369037 89379856 + MGP_CASTEiJ_P0061846 Pmvk protein_coding protein_coding MGP_CASTEiJ_T0061847.1 MGP_CASTEiJ_G0026603.1 mouse_genomes_project 3 89369076 89379868 + MGP_CASTEiJ_P0061847 Pmvk protein_coding protein_coding MGP_CASTEiJ_T0061848.1 MGP_CASTEiJ_G0026603.1 mouse_genomes_project 3 89369277 89379858 + MGP_CASTEiJ_P0061848 Pmvk protein_coding protein_coding MGP_CASTEiJ_T0007357.1 MGP_CASTEiJ_G0006040.1 mouse_genomes_project 3 51144407 51153160 - Gm30292 lincRNA lincRNA MGP_CASTEiJ_T0004132.1 MGP_CASTEiJ_G0003642.1 mouse_genomes_project 3 78456352 78501872 + 4921511C10Rik antisense antisense MGP_CASTEiJ_T0001298.1 MGP_CASTEiJ_G0001228.1 mouse_genomes_project 3 132409158 132409869 + TEC TEC MGP_CASTEiJ_T0001102.1 MGP_CASTEiJ_G0001035.1 mouse_genomes_project 3 33608060 33610710 - TEC TEC MGP_CASTEiJ_T0064221.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151218262 151231275 - MGP_CASTEiJ_P0064221 Adgrl2 protein_coding protein_coding MGP_CASTEiJ_T0064222.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151218265 151363480 - MGP_CASTEiJ_P0064222 Adgrl2 protein_coding protein_coding MGP_CASTEiJ_T0064223.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151218534 151226525 - MGP_CASTEiJ_P0064223 Adgrl2 protein_coding protein_coding MGP_CASTEiJ_T0064224.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151218535 151225732 - MGP_CASTEiJ_P0064224 Adgrl2 protein_coding protein_coding MGP_CASTEiJ_T0064225.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151218755 151363380 - MGP_CASTEiJ_P0064225 Adgrl2 protein_coding protein_coding MGP_CASTEiJ_T0064226.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151218772 151400592 - MGP_CASTEiJ_P0064226 Adgrl2 protein_coding protein_coding MGP_CASTEiJ_T0064227.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151218772 151400592 - MGP_CASTEiJ_P0064227 Adgrl2 protein_coding protein_coding MGP_CASTEiJ_T0064228.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151219625 151363496 - MGP_CASTEiJ_P0064228 Adgrl2 protein_coding protein_coding MGP_CASTEiJ_T0064229.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151219701 151296513 - MGP_CASTEiJ_P0064229 Adgrl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064230.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151219778 151363509 - MGP_CASTEiJ_P0064230 Adgrl2 protein_coding protein_coding MGP_CASTEiJ_T0064231.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151219778 151363509 - MGP_CASTEiJ_P0064231 Adgrl2 protein_coding protein_coding MGP_CASTEiJ_T0064232.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151219778 151363509 - MGP_CASTEiJ_P0064232 Adgrl2 protein_coding protein_coding MGP_CASTEiJ_T0064233.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151219778 151363509 - MGP_CASTEiJ_P0064233 Adgrl2 protein_coding protein_coding MGP_CASTEiJ_T0064234.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151219859 151263831 - MGP_CASTEiJ_P0064234 Adgrl2 protein_coding protein_coding MGP_CASTEiJ_T0064235.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151220407 151237195 - MGP_CASTEiJ_P0064235 Adgrl2 protein_coding protein_coding MGP_CASTEiJ_T0064236.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151220430 151238639 - MGP_CASTEiJ_P0064236 Adgrl2 protein_coding protein_coding MGP_CASTEiJ_T0064237.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151220449 151229154 - MGP_CASTEiJ_P0064237 Adgrl2 protein_coding protein_coding MGP_CASTEiJ_T0064238.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151223011 151227928 - Adgrl2 protein_coding retained_intron MGP_CASTEiJ_T0064239.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151229929 151238773 - Adgrl2 protein_coding retained_intron MGP_CASTEiJ_T0064240.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151264634 151363357 - MGP_CASTEiJ_P0064240 Adgrl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064241.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151294932 151399351 - Adgrl2 protein_coding retained_intron MGP_CASTEiJ_T0064242.1 MGP_CASTEiJ_G0027135.1 mouse_genomes_project 3 151362655 151399513 - Adgrl2 protein_coding retained_intron MGP_CASTEiJ_T0004183.1 MGP_CASTEiJ_G0003678.1 mouse_genomes_project 3 98949522 98957407 - Gm43120 antisense antisense MGP_CASTEiJ_T0010269.1 MGP_CASTEiJ_G0008457.1 mouse_genomes_project 3 136764000 136764106 + Gm24048 miRNA miRNA MGP_CASTEiJ_T0061274.1 MGP_CASTEiJ_G0026495.1 mouse_genomes_project 3 82477608 82484893 + MGP_CASTEiJ_P0061274 Fgg protein_coding protein_coding MGP_CASTEiJ_T0061275.1 MGP_CASTEiJ_G0026495.1 mouse_genomes_project 3 82477745 82484549 + MGP_CASTEiJ_P0061275 Fgg protein_coding protein_coding MGP_CASTEiJ_T0063541.1 MGP_CASTEiJ_G0027008.1 mouse_genomes_project 3 125326136 125330030 + MGP_CASTEiJ_P0063541 Tram1l1 protein_coding protein_coding MGP_CASTEiJ_T0060892.1 MGP_CASTEiJ_G0026408.1 mouse_genomes_project 3 57451891 57489233 - MGP_CASTEiJ_P0060892 Clrn1 protein_coding protein_coding MGP_CASTEiJ_T0060893.1 MGP_CASTEiJ_G0026408.1 mouse_genomes_project 3 57453146 57489233 - MGP_CASTEiJ_P0060893 Clrn1 protein_coding protein_coding MGP_CASTEiJ_T0060894.1 MGP_CASTEiJ_G0026408.1 mouse_genomes_project 3 57453912 57489361 - MGP_CASTEiJ_P0060894 Clrn1 protein_coding protein_coding MGP_CASTEiJ_T0060895.1 MGP_CASTEiJ_G0026408.1 mouse_genomes_project 3 57454294 57466844 - Clrn1 protein_coding retained_intron MGP_CASTEiJ_T0007435.1 MGP_CASTEiJ_G0006096.1 mouse_genomes_project 3 95369875 95375138 + Gm26594 lincRNA lincRNA MGP_CASTEiJ_T0001328.1 MGP_CASTEiJ_G0001258.1 mouse_genomes_project 3 155046694 155049008 - TEC TEC MGP_CASTEiJ_T0001312.1 MGP_CASTEiJ_G0001242.1 mouse_genomes_project 3 137533280 137545561 + TEC TEC MGP_CASTEiJ_T0007593.1 MGP_CASTEiJ_G0006224.1 mouse_genomes_project 3 158834948 158877220 + 9330178D15Rik lincRNA lincRNA MGP_CASTEiJ_T0013562.1 MGP_CASTEiJ_G0011725.1 mouse_genomes_project 3 34214894 34215593 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062443.1 MGP_CASTEiJ_G0026752.1 mouse_genomes_project 3 95398619 95406650 - MGP_CASTEiJ_P0062443 BC028528 protein_coding protein_coding MGP_CASTEiJ_T0062444.1 MGP_CASTEiJ_G0026752.1 mouse_genomes_project 3 95398623 95406600 - MGP_CASTEiJ_P0062444 BC028528 protein_coding protein_coding MGP_CASTEiJ_T0062445.1 MGP_CASTEiJ_G0026752.1 mouse_genomes_project 3 95399633 95406575 - MGP_CASTEiJ_P0062445 BC028528 protein_coding protein_coding MGP_CASTEiJ_T0062446.1 MGP_CASTEiJ_G0026752.1 mouse_genomes_project 3 95402601 95406596 - BC028528 protein_coding processed_transcript MGP_CASTEiJ_T0062447.1 MGP_CASTEiJ_G0026752.1 mouse_genomes_project 3 95403088 95406626 - BC028528 protein_coding retained_intron MGP_CASTEiJ_T0004230.1 MGP_CASTEiJ_G0003704.1 mouse_genomes_project 3 123379970 123414464 - Gm42836 antisense antisense MGP_CASTEiJ_T0010246.1 MGP_CASTEiJ_G0008434.1 mouse_genomes_project 3 92719162 92719993 + miRNA miRNA MGP_CASTEiJ_T0064316.1 MGP_CASTEiJ_G0027145.1 mouse_genomes_project 3 155011443 155059159 + MGP_CASTEiJ_P0064316 Usp33 protein_coding protein_coding MGP_CASTEiJ_T0064317.1 MGP_CASTEiJ_G0027145.1 mouse_genomes_project 3 155011443 155059438 + MGP_CASTEiJ_P0064317 Usp33 protein_coding protein_coding MGP_CASTEiJ_T0064318.1 MGP_CASTEiJ_G0027145.1 mouse_genomes_project 3 155011454 155059444 + MGP_CASTEiJ_P0064318 Usp33 protein_coding protein_coding MGP_CASTEiJ_T0064319.1 MGP_CASTEiJ_G0027145.1 mouse_genomes_project 3 155011477 155037740 + MGP_CASTEiJ_P0064319 Usp33 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064320.1 MGP_CASTEiJ_G0027145.1 mouse_genomes_project 3 155011480 155023117 + Usp33 protein_coding retained_intron MGP_CASTEiJ_T0064321.1 MGP_CASTEiJ_G0027145.1 mouse_genomes_project 3 155026567 155034385 + Usp33 protein_coding processed_transcript MGP_CASTEiJ_T0064322.1 MGP_CASTEiJ_G0027145.1 mouse_genomes_project 3 155029788 155033048 + Usp33 protein_coding retained_intron MGP_CASTEiJ_T0064323.1 MGP_CASTEiJ_G0027145.1 mouse_genomes_project 3 155032168 155039493 + Usp33 protein_coding retained_intron MGP_CASTEiJ_T0064324.1 MGP_CASTEiJ_G0027145.1 mouse_genomes_project 3 155034323 155040859 + MGP_CASTEiJ_P0064324 Usp33 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064325.1 MGP_CASTEiJ_G0027145.1 mouse_genomes_project 3 155047890 155058338 + Usp33 protein_coding processed_transcript MGP_CASTEiJ_T0064326.1 MGP_CASTEiJ_G0027145.1 mouse_genomes_project 3 155048377 155050093 + Usp33 protein_coding retained_intron MGP_CASTEiJ_T0062968.1 MGP_CASTEiJ_G0026884.1 mouse_genomes_project 3 106008027 106021773 + MGP_CASTEiJ_P0062968 Ovgp1 protein_coding protein_coding MGP_CASTEiJ_T0062969.1 MGP_CASTEiJ_G0026884.1 mouse_genomes_project 3 106008399 106020423 + MGP_CASTEiJ_P0062969 Ovgp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062970.1 MGP_CASTEiJ_G0026884.1 mouse_genomes_project 3 106011612 106014430 + Ovgp1 protein_coding retained_intron MGP_CASTEiJ_T0062971.1 MGP_CASTEiJ_G0026884.1 mouse_genomes_project 3 106014405 106019115 + Ovgp1 protein_coding processed_transcript MGP_CASTEiJ_T0099715.1 MGP_CASTEiJ_G0036628.1 mouse_genomes_project 3 85993628 85993799 + Gm23850 snRNA snRNA MGP_CASTEiJ_T0001105.1 MGP_CASTEiJ_G0001038.1 mouse_genomes_project 3 35060464 35062949 + TEC TEC MGP_CASTEiJ_T0063134.1 MGP_CASTEiJ_G0026930.1 mouse_genomes_project 3 108629745 108654288 + MGP_CASTEiJ_P0063134 protein_coding protein_coding MGP_CASTEiJ_T0063135.1 MGP_CASTEiJ_G0026930.1 mouse_genomes_project 3 108641763 108654210 + MGP_CASTEiJ_P0063135 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062972.1 MGP_CASTEiJ_G0026885.1 mouse_genomes_project 3 106031692 106053015 - MGP_CASTEiJ_P0062972 Pifo protein_coding protein_coding MGP_CASTEiJ_T0062973.1 MGP_CASTEiJ_G0026885.1 mouse_genomes_project 3 106031701 106036149 - MGP_CASTEiJ_P0062973 Pifo protein_coding protein_coding MGP_CASTEiJ_T0013650.1 MGP_CASTEiJ_G0011813.1 mouse_genomes_project 3 62963725 62963974 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061120.1 MGP_CASTEiJ_G0026459.1 mouse_genomes_project 3 68131727 68399071 + MGP_CASTEiJ_P0061120 Ppm1l protein_coding protein_coding MGP_CASTEiJ_T0061121.1 MGP_CASTEiJ_G0026459.1 mouse_genomes_project 3 68327051 68327813 + Ppm1l protein_coding retained_intron MGP_CASTEiJ_T0061122.1 MGP_CASTEiJ_G0026459.1 mouse_genomes_project 3 68379388 68389911 + Ppm1l protein_coding processed_transcript MGP_CASTEiJ_T0061123.1 MGP_CASTEiJ_G0026459.1 mouse_genomes_project 3 68385994 68390092 + Ppm1l protein_coding retained_intron MGP_CASTEiJ_T0060365.1 MGP_CASTEiJ_G0026313.1 mouse_genomes_project 3 30510089 30651612 - MGP_CASTEiJ_P0060365 Pex5l protein_coding protein_coding MGP_CASTEiJ_T0060366.1 MGP_CASTEiJ_G0026313.1 mouse_genomes_project 3 30510089 30650619 - MGP_CASTEiJ_P0060366 Pex5l protein_coding protein_coding MGP_CASTEiJ_T0060367.1 MGP_CASTEiJ_G0026313.1 mouse_genomes_project 3 30510089 30651612 - MGP_CASTEiJ_P0060367 Pex5l protein_coding protein_coding MGP_CASTEiJ_T0060368.1 MGP_CASTEiJ_G0026313.1 mouse_genomes_project 3 30510089 30651612 - MGP_CASTEiJ_P0060368 Pex5l protein_coding protein_coding MGP_CASTEiJ_T0060369.1 MGP_CASTEiJ_G0026313.1 mouse_genomes_project 3 30510089 30651612 - MGP_CASTEiJ_P0060369 Pex5l protein_coding protein_coding MGP_CASTEiJ_T0060370.1 MGP_CASTEiJ_G0026313.1 mouse_genomes_project 3 30510310 30651581 - MGP_CASTEiJ_P0060370 Pex5l protein_coding protein_coding MGP_CASTEiJ_T0060371.1 MGP_CASTEiJ_G0026313.1 mouse_genomes_project 3 30510630 30714382 - MGP_CASTEiJ_P0060371 Pex5l protein_coding protein_coding MGP_CASTEiJ_T0060372.1 MGP_CASTEiJ_G0026313.1 mouse_genomes_project 3 30510630 30651587 - MGP_CASTEiJ_P0060372 Pex5l protein_coding protein_coding MGP_CASTEiJ_T0060373.1 MGP_CASTEiJ_G0026313.1 mouse_genomes_project 3 30511301 30547322 - MGP_CASTEiJ_P0060373 Pex5l protein_coding protein_coding MGP_CASTEiJ_T0060374.1 MGP_CASTEiJ_G0026313.1 mouse_genomes_project 3 30515101 30714547 - Pex5l protein_coding retained_intron MGP_CASTEiJ_T0060375.1 MGP_CASTEiJ_G0026313.1 mouse_genomes_project 3 30703303 30714376 - Pex5l protein_coding processed_transcript MGP_CASTEiJ_T0060376.1 MGP_CASTEiJ_G0026313.1 mouse_genomes_project 3 30711259 30714483 - Pex5l protein_coding retained_intron MGP_CASTEiJ_T0013659.1 MGP_CASTEiJ_G0011822.1 mouse_genomes_project 3 65351421 65353608 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013804.1 MGP_CASTEiJ_G0011967.1 mouse_genomes_project 3 112904449 112905314 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013907.1 MGP_CASTEiJ_G0012070.1 mouse_genomes_project 3 148214503 148223585 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004181.1 MGP_CASTEiJ_G0003677.1 mouse_genomes_project 3 97381270 97387063 + Gm43076 antisense antisense MGP_CASTEiJ_T0004182.1 MGP_CASTEiJ_G0003677.1 mouse_genomes_project 3 97381461 97383996 + Gm43076 antisense antisense MGP_CASTEiJ_T0061009.1 MGP_CASTEiJ_G0026435.1 mouse_genomes_project 3 64135489 64148465 - MGP_CASTEiJ_P0061009 Ssr3 protein_coding protein_coding MGP_CASTEiJ_T0061010.1 MGP_CASTEiJ_G0026435.1 mouse_genomes_project 3 64137507 64139210 - Ssr3 protein_coding retained_intron MGP_CASTEiJ_T0061011.1 MGP_CASTEiJ_G0026435.1 mouse_genomes_project 3 64137585 64148454 - MGP_CASTEiJ_P0061011 Ssr3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0061012.1 MGP_CASTEiJ_G0026435.1 mouse_genomes_project 3 64137857 64148395 - MGP_CASTEiJ_P0061012 Ssr3 protein_coding protein_coding MGP_CASTEiJ_T0099687.1 MGP_CASTEiJ_G0036600.1 mouse_genomes_project 3 37474756 37474916 + Gm23796 snRNA snRNA MGP_CASTEiJ_T0013820.1 MGP_CASTEiJ_G0011983.1 mouse_genomes_project 3 117718879 117719557 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099688.1 MGP_CASTEiJ_G0036601.1 mouse_genomes_project 3 38751815 38751973 + Gm22043 snRNA snRNA MGP_CASTEiJ_T0098922.1 MGP_CASTEiJ_G0035846.1 mouse_genomes_project 3 104791099 104792594 - Gm42658 sense_intronic sense_intronic MGP_CASTEiJ_T0004196.1 MGP_CASTEiJ_G0003686.1 mouse_genomes_project 3 104356923 104366175 + Gm43257 antisense antisense MGP_CASTEiJ_T0013686.1 MGP_CASTEiJ_G0011849.1 mouse_genomes_project 3 75134074 75134866 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001267.1 MGP_CASTEiJ_G0001198.1 mouse_genomes_project 3 127733447 127737956 + TEC TEC MGP_CASTEiJ_T0098590.1 MGP_CASTEiJ_G0035521.1 mouse_genomes_project 3 50113101 50113218 + n-R5s196 rRNA rRNA MGP_CASTEiJ_T0061329.1 MGP_CASTEiJ_G0026508.1 mouse_genomes_project 3 84024563 85494254 - MGP_CASTEiJ_P0061329 protein_coding protein_coding MGP_CASTEiJ_T0061351.1 MGP_CASTEiJ_G0026508.1 mouse_genomes_project 3 85398193 85494256 - protein_coding processed_transcript MGP_CASTEiJ_T0061352.1 MGP_CASTEiJ_G0026508.1 mouse_genomes_project 3 85414408 85494106 - protein_coding retained_intron MGP_CASTEiJ_T0062075.1 MGP_CASTEiJ_G0026661.1 mouse_genomes_project 3 91755814 91757758 - MGP_CASTEiJ_P0062075 Sprr1a protein_coding protein_coding MGP_CASTEiJ_T0098918.1 MGP_CASTEiJ_G0035842.1 mouse_genomes_project 3 104449665 104451946 - A530041M06Rik sense_intronic sense_intronic MGP_CASTEiJ_T0013798.1 MGP_CASTEiJ_G0011961.1 mouse_genomes_project 3 111038412 111038747 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063163.1 MGP_CASTEiJ_G0026936.1 mouse_genomes_project 3 108845573 108945197 - MGP_CASTEiJ_P0063163 5330417C22Rik protein_coding protein_coding MGP_CASTEiJ_T0063164.1 MGP_CASTEiJ_G0026936.1 mouse_genomes_project 3 108847974 108945273 - MGP_CASTEiJ_P0063164 5330417C22Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063165.1 MGP_CASTEiJ_G0026936.1 mouse_genomes_project 3 108848080 108945273 - MGP_CASTEiJ_P0063165 5330417C22Rik protein_coding protein_coding MGP_CASTEiJ_T0063166.1 MGP_CASTEiJ_G0026936.1 mouse_genomes_project 3 108854863 108856252 - 5330417C22Rik protein_coding retained_intron MGP_CASTEiJ_T0063167.1 MGP_CASTEiJ_G0026936.1 mouse_genomes_project 3 108859018 108861299 - 5330417C22Rik protein_coding retained_intron MGP_CASTEiJ_T0063168.1 MGP_CASTEiJ_G0026936.1 mouse_genomes_project 3 108883118 108945208 - 5330417C22Rik protein_coding retained_intron MGP_CASTEiJ_T0062099.1 MGP_CASTEiJ_G0026682.1 mouse_genomes_project 3 92218912 92219459 - MGP_CASTEiJ_P0062099 protein_coding protein_coding MGP_CASTEiJ_T0013642.1 MGP_CASTEiJ_G0011805.1 mouse_genomes_project 3 60068138 60068633 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060133.1 MGP_CASTEiJ_G0026270.1 mouse_genomes_project 3 17475879 17506163 - MGP_CASTEiJ_P0060133 Cpb1 protein_coding protein_coding MGP_CASTEiJ_T0060134.1 MGP_CASTEiJ_G0026270.1 mouse_genomes_project 3 17479200 17483189 - Cpb1 protein_coding retained_intron MGP_CASTEiJ_T0060135.1 MGP_CASTEiJ_G0026270.1 mouse_genomes_project 3 17496927 17498973 - Cpb1 protein_coding processed_transcript MGP_CASTEiJ_T0010233.1 MGP_CASTEiJ_G0008421.1 mouse_genomes_project 3 80029668 80029779 - Gm25749 miRNA miRNA MGP_CASTEiJ_T0062107.1 MGP_CASTEiJ_G0026689.1 mouse_genomes_project 3 92323262 92324459 - MGP_CASTEiJ_P0062107 Lce1m protein_coding protein_coding MGP_CASTEiJ_T0062108.1 MGP_CASTEiJ_G0026689.1 mouse_genomes_project 3 92323905 92324458 - MGP_CASTEiJ_P0062108 Lce1m protein_coding protein_coding MGP_CASTEiJ_T0059934.1 MGP_CASTEiJ_G0026217.1 mouse_genomes_project 3 2441611 2648172 + MGP_CASTEiJ_P0059934 Zfhx4 protein_coding protein_coding MGP_CASTEiJ_T0059935.1 MGP_CASTEiJ_G0026217.1 mouse_genomes_project 3 2441631 2564731 + Zfhx4 protein_coding retained_intron MGP_CASTEiJ_T0059936.1 MGP_CASTEiJ_G0026217.1 mouse_genomes_project 3 2441639 2650863 + MGP_CASTEiJ_P0059936 Zfhx4 protein_coding protein_coding MGP_CASTEiJ_T0059937.1 MGP_CASTEiJ_G0026217.1 mouse_genomes_project 3 2442505 2648221 + MGP_CASTEiJ_P0059937 Zfhx4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0059938.1 MGP_CASTEiJ_G0026217.1 mouse_genomes_project 3 2445284 2466736 + MGP_CASTEiJ_P0059938 Zfhx4 protein_coding protein_coding MGP_CASTEiJ_T0059939.1 MGP_CASTEiJ_G0026217.1 mouse_genomes_project 3 2466389 2650865 + MGP_CASTEiJ_P0059939 Zfhx4 protein_coding protein_coding MGP_CASTEiJ_T0004125.1 MGP_CASTEiJ_G0003637.1 mouse_genomes_project 3 62717903 62722942 + Gm26850 antisense antisense MGP_CASTEiJ_T0004126.1 MGP_CASTEiJ_G0003637.1 mouse_genomes_project 3 62717905 62719721 + Gm26850 antisense antisense MGP_CASTEiJ_T0060606.1 MGP_CASTEiJ_G0026353.1 mouse_genomes_project 3 38828303 38846150 - MGP_CASTEiJ_P0060606 Pgrmc2 protein_coding protein_coding MGP_CASTEiJ_T0060607.1 MGP_CASTEiJ_G0026353.1 mouse_genomes_project 3 38830491 38832661 - Pgrmc2 protein_coding retained_intron MGP_CASTEiJ_T0013707.1 MGP_CASTEiJ_G0011870.1 mouse_genomes_project 3 84089562 84090460 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007563.1 MGP_CASTEiJ_G0006204.1 mouse_genomes_project 3 146458687 146460192 + Gm43447 lincRNA lincRNA MGP_CASTEiJ_T0062501.1 MGP_CASTEiJ_G0026772.1 mouse_genomes_project 3 95838092 95838473 + MGP_CASTEiJ_P0062501 Hist2h2bb protein_coding protein_coding MGP_CASTEiJ_T0063628.1 MGP_CASTEiJ_G0027020.1 mouse_genomes_project 3 128867265 128869762 + MGP_CASTEiJ_P0063628 Neurog2 protein_coding protein_coding MGP_CASTEiJ_T0063629.1 MGP_CASTEiJ_G0027020.1 mouse_genomes_project 3 128867523 128904976 + MGP_CASTEiJ_P0063629 Neurog2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0060261.1 MGP_CASTEiJ_G0026291.1 mouse_genomes_project 3 28101026 28126965 - MGP_CASTEiJ_P0060261 Lrrc34 protein_coding protein_coding MGP_CASTEiJ_T0004130.1 MGP_CASTEiJ_G0003640.1 mouse_genomes_project 3 64619891 64664799 - Gm37359 antisense antisense MGP_CASTEiJ_T0060058.1 MGP_CASTEiJ_G0026254.1 mouse_genomes_project 3 13459671 13495229 + MGP_CASTEiJ_P0060058 Ythdf3 protein_coding protein_coding MGP_CASTEiJ_T0060059.1 MGP_CASTEiJ_G0026254.1 mouse_genomes_project 3 13459695 13481299 + Ythdf3 protein_coding processed_transcript MGP_CASTEiJ_T0060060.1 MGP_CASTEiJ_G0026254.1 mouse_genomes_project 3 13459695 13493199 + MGP_CASTEiJ_P0060060 Ythdf3 protein_coding protein_coding MGP_CASTEiJ_T0060061.1 MGP_CASTEiJ_G0026254.1 mouse_genomes_project 3 13459695 13495047 + MGP_CASTEiJ_P0060061 Ythdf3 protein_coding protein_coding MGP_CASTEiJ_T0060062.1 MGP_CASTEiJ_G0026254.1 mouse_genomes_project 3 13459880 13491519 + MGP_CASTEiJ_P0060062 Ythdf3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0004217.1 MGP_CASTEiJ_G0003693.1 mouse_genomes_project 3 108619351 108629805 - 1700010K24Rik antisense antisense MGP_CASTEiJ_T0013901.1 MGP_CASTEiJ_G0012064.1 mouse_genomes_project 3 145995524 145996349 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102294.1 MGP_CASTEiJ_G0039019.1 mouse_genomes_project 3 106852954 106853365 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013762.1 MGP_CASTEiJ_G0011925.1 mouse_genomes_project 3 99711498 99711813 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013884.1 MGP_CASTEiJ_G0012047.1 mouse_genomes_project 3 140282269 140282495 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061133.1 MGP_CASTEiJ_G0026462.1 mouse_genomes_project 3 68686550 68724741 - MGP_CASTEiJ_P0061133 Sptssb protein_coding protein_coding MGP_CASTEiJ_T0061134.1 MGP_CASTEiJ_G0026462.1 mouse_genomes_project 3 68687586 68724723 - MGP_CASTEiJ_P0061134 Sptssb protein_coding protein_coding MGP_CASTEiJ_T0001225.1 MGP_CASTEiJ_G0001156.1 mouse_genomes_project 3 97795688 97798742 + TEC TEC MGP_CASTEiJ_T0013809.1 MGP_CASTEiJ_G0011972.1 mouse_genomes_project 3 114177379 114177637 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099728.1 MGP_CASTEiJ_G0036641.1 mouse_genomes_project 3 94340430 94340532 - Gm26279 snRNA snRNA MGP_CASTEiJ_T0013566.1 MGP_CASTEiJ_G0011729.1 mouse_genomes_project 3 34826371 34827450 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013485.1 MGP_CASTEiJ_G0011648.1 mouse_genomes_project 3 7255603 7258611 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017228.1 MGP_CASTEiJ_G0014828.1 mouse_genomes_project 3 95821692 95823351 - Gm20627 processed_transcript lincRNA MGP_CASTEiJ_T0017229.1 MGP_CASTEiJ_G0014828.1 mouse_genomes_project 3 95821694 95822543 - Gm20627 processed_transcript retained_intron MGP_CASTEiJ_T0007317.1 MGP_CASTEiJ_G0006011.1 mouse_genomes_project 3 33939195 33941538 - Gm43204 lincRNA lincRNA MGP_CASTEiJ_T0061088.1 MGP_CASTEiJ_G0026453.1 mouse_genomes_project 3 67667890 67670439 + MGP_CASTEiJ_P0061088 1110032F04Rik protein_coding protein_coding MGP_CASTEiJ_T0062089.1 MGP_CASTEiJ_G0026673.1 mouse_genomes_project 3 91995368 91996949 - MGP_CASTEiJ_P0062089 protein_coding protein_coding MGP_CASTEiJ_T0061342.1 MGP_CASTEiJ_G0026512.1 mouse_genomes_project 3 85164124 85245619 + MGP_CASTEiJ_P0061342 Gatb protein_coding protein_coding MGP_CASTEiJ_T0061343.1 MGP_CASTEiJ_G0026512.1 mouse_genomes_project 3 85164124 85236587 + MGP_CASTEiJ_P0061343 Gatb protein_coding protein_coding MGP_CASTEiJ_T0061344.1 MGP_CASTEiJ_G0026512.1 mouse_genomes_project 3 85164132 85242827 + MGP_CASTEiJ_P0061344 Gatb protein_coding protein_coding MGP_CASTEiJ_T0061345.1 MGP_CASTEiJ_G0026512.1 mouse_genomes_project 3 85164137 85168927 + Gatb protein_coding processed_transcript MGP_CASTEiJ_T0061346.1 MGP_CASTEiJ_G0026512.1 mouse_genomes_project 3 85164200 85244154 + Gatb protein_coding processed_transcript MGP_CASTEiJ_T0062718.1 MGP_CASTEiJ_G0026833.1 mouse_genomes_project 3 101354443 101384734 - MGP_CASTEiJ_P0062718 Atp1a1 protein_coding protein_coding MGP_CASTEiJ_T0062719.1 MGP_CASTEiJ_G0026833.1 mouse_genomes_project 3 101354540 101355802 - Atp1a1 protein_coding retained_intron MGP_CASTEiJ_T0062720.1 MGP_CASTEiJ_G0026833.1 mouse_genomes_project 3 101364004 101367259 - Atp1a1 protein_coding retained_intron MGP_CASTEiJ_T0062031.1 MGP_CASTEiJ_G0026633.1 mouse_genomes_project 3 90578957 90604990 + S100a3 protein_coding processed_transcript MGP_CASTEiJ_T0062032.1 MGP_CASTEiJ_G0026633.1 mouse_genomes_project 3 90604332 90624108 + MGP_CASTEiJ_P0062032 S100a3 protein_coding protein_coding MGP_CASTEiJ_T0062033.1 MGP_CASTEiJ_G0026633.1 mouse_genomes_project 3 90606620 90624154 + MGP_CASTEiJ_P0062033 S100a3 protein_coding protein_coding MGP_CASTEiJ_T0062035.1 MGP_CASTEiJ_G0026633.1 mouse_genomes_project 3 90621707 90624332 + MGP_CASTEiJ_P0062035 S100a3 protein_coding protein_coding MGP_CASTEiJ_T0062036.1 MGP_CASTEiJ_G0026633.1 mouse_genomes_project 3 90621737 90624332 + S100a3 protein_coding retained_intron MGP_CASTEiJ_T0061951.1 MGP_CASTEiJ_G0026618.1 mouse_genomes_project 3 90210267 90214323 + MGP_CASTEiJ_P0061951 Jtb protein_coding protein_coding MGP_CASTEiJ_T0061952.1 MGP_CASTEiJ_G0026618.1 mouse_genomes_project 3 90210282 90214030 + MGP_CASTEiJ_P0061952 Jtb protein_coding protein_coding MGP_CASTEiJ_T0061953.1 MGP_CASTEiJ_G0026618.1 mouse_genomes_project 3 90210304 90213905 + Jtb protein_coding retained_intron MGP_CASTEiJ_T0061954.1 MGP_CASTEiJ_G0026618.1 mouse_genomes_project 3 90210718 90212399 + Jtb protein_coding retained_intron MGP_CASTEiJ_T0013606.1 MGP_CASTEiJ_G0011769.1 mouse_genomes_project 3 49619090 49619476 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013583.1 MGP_CASTEiJ_G0011746.1 mouse_genomes_project 3 41074890 41075348 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062500.1 MGP_CASTEiJ_G0026771.1 mouse_genomes_project 3 95836108 95837494 + MGP_CASTEiJ_P0062500 Hist2h3c2 protein_coding protein_coding MGP_CASTEiJ_T0060410.1 MGP_CASTEiJ_G0026319.1 mouse_genomes_project 3 33382291 33384206 + Atp11b protein_coding retained_intron MGP_CASTEiJ_T0060411.1 MGP_CASTEiJ_G0026319.1 mouse_genomes_project 3 33382319 33464399 + Atp11b protein_coding processed_transcript MGP_CASTEiJ_T0060412.1 MGP_CASTEiJ_G0026319.1 mouse_genomes_project 3 33382319 33494634 + Atp11b protein_coding retained_intron MGP_CASTEiJ_T0060413.1 MGP_CASTEiJ_G0026319.1 mouse_genomes_project 3 33382319 33494639 + MGP_CASTEiJ_P0060413 Atp11b protein_coding protein_coding MGP_CASTEiJ_T0060414.1 MGP_CASTEiJ_G0026319.1 mouse_genomes_project 3 33422394 33441344 + MGP_CASTEiJ_P0060414 Atp11b protein_coding protein_coding MGP_CASTEiJ_T0060415.1 MGP_CASTEiJ_G0026319.1 mouse_genomes_project 3 33423885 33494637 + MGP_CASTEiJ_P0060415 Atp11b protein_coding protein_coding MGP_CASTEiJ_T0060416.1 MGP_CASTEiJ_G0026319.1 mouse_genomes_project 3 33442217 33444659 + Atp11b protein_coding processed_transcript MGP_CASTEiJ_T0060417.1 MGP_CASTEiJ_G0026319.1 mouse_genomes_project 3 33461684 33463900 + Atp11b protein_coding retained_intron MGP_CASTEiJ_T0060418.1 MGP_CASTEiJ_G0026319.1 mouse_genomes_project 3 33474784 33494634 + Atp11b protein_coding retained_intron MGP_CASTEiJ_T0060419.1 MGP_CASTEiJ_G0026319.1 mouse_genomes_project 3 33475117 33494639 + MGP_CASTEiJ_P0060419 Atp11b protein_coding protein_coding MGP_CASTEiJ_T0013708.1 MGP_CASTEiJ_G0011871.1 mouse_genomes_project 3 84720688 84721349 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098757.1 MGP_CASTEiJ_G0035688.1 mouse_genomes_project 3 67887288 67887629 - Gm22009 scaRNA scaRNA MGP_CASTEiJ_T0063072.1 MGP_CASTEiJ_G0026914.1 mouse_genomes_project 3 108229295 108246441 + MGP_CASTEiJ_P0063072 Eps8l3 protein_coding protein_coding MGP_CASTEiJ_T0063073.1 MGP_CASTEiJ_G0026914.1 mouse_genomes_project 3 108229310 108233295 + Eps8l3 protein_coding processed_transcript MGP_CASTEiJ_T0063074.1 MGP_CASTEiJ_G0026914.1 mouse_genomes_project 3 108229328 108233671 + MGP_CASTEiJ_P0063074 Eps8l3 protein_coding protein_coding MGP_CASTEiJ_T0100939.1 MGP_CASTEiJ_G0037852.1 mouse_genomes_project 3 5918567 5918686 - Gm23670 snoRNA snoRNA MGP_CASTEiJ_T0060694.1 MGP_CASTEiJ_G0026366.1 mouse_genomes_project 3 49756719 49766847 + Rab33b protein_coding processed_transcript MGP_CASTEiJ_T0060695.1 MGP_CASTEiJ_G0026366.1 mouse_genomes_project 3 49756729 49757324 + MGP_CASTEiJ_P0060695 Rab33b protein_coding protein_coding MGP_CASTEiJ_T0060696.1 MGP_CASTEiJ_G0026366.1 mouse_genomes_project 3 49756763 49768765 + MGP_CASTEiJ_P0060696 Rab33b protein_coding protein_coding MGP_CASTEiJ_T0061547.1 MGP_CASTEiJ_G0026556.1 mouse_genomes_project 3 88162156 88181165 - MGP_CASTEiJ_P0061547 Pmf1 protein_coding protein_coding MGP_CASTEiJ_T0061548.1 MGP_CASTEiJ_G0026556.1 mouse_genomes_project 3 88162156 88181160 - MGP_CASTEiJ_P0061548 Pmf1 protein_coding protein_coding MGP_CASTEiJ_T0061549.1 MGP_CASTEiJ_G0026556.1 mouse_genomes_project 3 88162392 88181099 - Pmf1 protein_coding processed_transcript MGP_CASTEiJ_T0061550.1 MGP_CASTEiJ_G0026556.1 mouse_genomes_project 3 88163757 88164739 - Pmf1 protein_coding retained_intron MGP_CASTEiJ_T0061551.1 MGP_CASTEiJ_G0026556.1 mouse_genomes_project 3 88164081 88181120 - MGP_CASTEiJ_P0061551 Pmf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061552.1 MGP_CASTEiJ_G0026556.1 mouse_genomes_project 3 88165412 88167744 - Pmf1 protein_coding retained_intron MGP_CASTEiJ_T0061553.1 MGP_CASTEiJ_G0026556.1 mouse_genomes_project 3 88167565 88181142 - Pmf1 protein_coding retained_intron MGP_CASTEiJ_T0004229.1 MGP_CASTEiJ_G0003703.1 mouse_genomes_project 3 123324241 123341842 - Gm42835 antisense antisense MGP_CASTEiJ_T0007327.1 MGP_CASTEiJ_G0006020.1 mouse_genomes_project 3 36135515 36139691 + Gm42920 lincRNA lincRNA MGP_CASTEiJ_T0001236.1 MGP_CASTEiJ_G0001167.1 mouse_genomes_project 3 111111857 111115797 + TEC TEC MGP_CASTEiJ_T0063642.1 MGP_CASTEiJ_G0027023.1 mouse_genomes_project 3 129054123 129083891 - MGP_CASTEiJ_P0063642 Ap1ar protein_coding protein_coding MGP_CASTEiJ_T0063643.1 MGP_CASTEiJ_G0027023.1 mouse_genomes_project 3 129054128 129083879 - MGP_CASTEiJ_P0063643 Ap1ar protein_coding protein_coding MGP_CASTEiJ_T0063644.1 MGP_CASTEiJ_G0027023.1 mouse_genomes_project 3 129054383 129055986 - Ap1ar protein_coding retained_intron MGP_CASTEiJ_T0063645.1 MGP_CASTEiJ_G0027023.1 mouse_genomes_project 3 129059339 129059974 - Ap1ar protein_coding retained_intron MGP_CASTEiJ_T0063646.1 MGP_CASTEiJ_G0027023.1 mouse_genomes_project 3 129060530 129064611 - Ap1ar protein_coding retained_intron MGP_CASTEiJ_T0063647.1 MGP_CASTEiJ_G0027023.1 mouse_genomes_project 3 129062636 129064300 - Ap1ar protein_coding retained_intron MGP_CASTEiJ_T0063648.1 MGP_CASTEiJ_G0027023.1 mouse_genomes_project 3 129066618 129072423 - Ap1ar protein_coding retained_intron MGP_CASTEiJ_T0063649.1 MGP_CASTEiJ_G0027023.1 mouse_genomes_project 3 129067680 129083599 - Ap1ar protein_coding retained_intron MGP_CASTEiJ_T0063650.1 MGP_CASTEiJ_G0027023.1 mouse_genomes_project 3 129067681 129069568 - Ap1ar protein_coding retained_intron MGP_CASTEiJ_T0063651.1 MGP_CASTEiJ_G0027023.1 mouse_genomes_project 3 129067716 129083624 - MGP_CASTEiJ_P0063651 Ap1ar protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001187.1 MGP_CASTEiJ_G0001118.1 mouse_genomes_project 3 67210137 67218147 + TEC TEC MGP_CASTEiJ_T0064207.1 MGP_CASTEiJ_G0027133.1 mouse_genomes_project 3 149087612 149171865 - MGP_CASTEiJ_P0064207 Prkacb protein_coding protein_coding MGP_CASTEiJ_T0064208.1 MGP_CASTEiJ_G0027133.1 mouse_genomes_project 3 149087902 149128182 - MGP_CASTEiJ_P0064208 Prkacb protein_coding protein_coding MGP_CASTEiJ_T0064209.1 MGP_CASTEiJ_G0027133.1 mouse_genomes_project 3 149087902 149127662 - MGP_CASTEiJ_P0064209 Prkacb protein_coding protein_coding MGP_CASTEiJ_T0064210.1 MGP_CASTEiJ_G0027133.1 mouse_genomes_project 3 149087904 149138785 - MGP_CASTEiJ_P0064210 Prkacb protein_coding protein_coding MGP_CASTEiJ_T0064211.1 MGP_CASTEiJ_G0027133.1 mouse_genomes_project 3 149090358 149106068 - Prkacb protein_coding retained_intron MGP_CASTEiJ_T0064212.1 MGP_CASTEiJ_G0027133.1 mouse_genomes_project 3 149108414 149122509 - MGP_CASTEiJ_P0064212 Prkacb protein_coding protein_coding MGP_CASTEiJ_T0064213.1 MGP_CASTEiJ_G0027133.1 mouse_genomes_project 3 149108414 149147289 - MGP_CASTEiJ_P0064213 Prkacb protein_coding protein_coding MGP_CASTEiJ_T0064214.1 MGP_CASTEiJ_G0027133.1 mouse_genomes_project 3 149168458 149171895 - Prkacb protein_coding retained_intron MGP_CASTEiJ_T0063794.1 MGP_CASTEiJ_G0027053.1 mouse_genomes_project 3 134684426 134813688 - MGP_CASTEiJ_P0063794 protein_coding protein_coding MGP_CASTEiJ_T0063795.1 MGP_CASTEiJ_G0027053.1 mouse_genomes_project 3 134692098 134706950 - MGP_CASTEiJ_P0063795 protein_coding protein_coding MGP_CASTEiJ_T0063796.1 MGP_CASTEiJ_G0027053.1 mouse_genomes_project 3 134695288 134783463 - MGP_CASTEiJ_P0063796 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063797.1 MGP_CASTEiJ_G0027053.1 mouse_genomes_project 3 134729703 134813688 - MGP_CASTEiJ_P0063797 protein_coding protein_coding MGP_CASTEiJ_T0063798.1 MGP_CASTEiJ_G0027053.1 mouse_genomes_project 3 134742419 134813748 - MGP_CASTEiJ_P0063798 protein_coding protein_coding MGP_CASTEiJ_T0013924.1 MGP_CASTEiJ_G0012087.1 mouse_genomes_project 3 158932144 158935355 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004253.1 MGP_CASTEiJ_G0003722.1 mouse_genomes_project 3 137066110 137068565 - 4930539J05Rik antisense antisense MGP_CASTEiJ_T0004254.1 MGP_CASTEiJ_G0003722.1 mouse_genomes_project 3 137066127 137067661 - 4930539J05Rik antisense antisense MGP_CASTEiJ_T0001263.1 MGP_CASTEiJ_G0001194.1 mouse_genomes_project 3 125404522 125404772 - TEC TEC MGP_CASTEiJ_T0013647.1 MGP_CASTEiJ_G0011810.1 mouse_genomes_project 3 62567320 62567970 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100975.1 MGP_CASTEiJ_G0037888.1 mouse_genomes_project 3 88499180 88499315 + Gm25945 snoRNA snoRNA MGP_CASTEiJ_T0001285.1 MGP_CASTEiJ_G0001216.1 mouse_genomes_project 3 128968290 128970294 - TEC TEC MGP_CASTEiJ_T0013671.1 MGP_CASTEiJ_G0011834.1 mouse_genomes_project 3 68981806 68982083 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062119.1 MGP_CASTEiJ_G0026695.1 mouse_genomes_project 3 92806433 92809653 + MGP_CASTEiJ_P0062119 Tchhl1 protein_coding protein_coding MGP_CASTEiJ_T0102283.1 MGP_CASTEiJ_G0039008.1 mouse_genomes_project 3 88150196 88151249 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0063662.1 MGP_CASTEiJ_G0027026.1 mouse_genomes_project 3 130662266 130734533 - MGP_CASTEiJ_P0063662 Enpep protein_coding protein_coding MGP_CASTEiJ_T0063663.1 MGP_CASTEiJ_G0027026.1 mouse_genomes_project 3 130663367 130734077 - MGP_CASTEiJ_P0063663 Enpep protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063664.1 MGP_CASTEiJ_G0027026.1 mouse_genomes_project 3 130670535 130676217 - Enpep protein_coding retained_intron MGP_CASTEiJ_T0063665.1 MGP_CASTEiJ_G0027026.1 mouse_genomes_project 3 130670706 130707815 - MGP_CASTEiJ_P0063665 Enpep protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063666.1 MGP_CASTEiJ_G0027026.1 mouse_genomes_project 3 130696451 130734533 - Enpep protein_coding retained_intron MGP_CASTEiJ_T0098587.1 MGP_CASTEiJ_G0035518.1 mouse_genomes_project 3 22764654 22764789 + Gm24250 rRNA rRNA MGP_CASTEiJ_T0099719.1 MGP_CASTEiJ_G0036632.1 mouse_genomes_project 3 88840280 88840387 - Gm26465 snRNA snRNA MGP_CASTEiJ_T0001296.1 MGP_CASTEiJ_G0001226.1 mouse_genomes_project 3 132114891 132117697 + TEC TEC MGP_CASTEiJ_T0001212.1 MGP_CASTEiJ_G0001143.1 mouse_genomes_project 3 92725781 92726980 + TEC TEC MGP_CASTEiJ_T0061405.1 MGP_CASTEiJ_G0026528.1 mouse_genomes_project 3 87316241 87399816 + Arhgef11 protein_coding retained_intron MGP_CASTEiJ_T0061406.1 MGP_CASTEiJ_G0026528.1 mouse_genomes_project 3 87316257 87446105 + MGP_CASTEiJ_P0061406 Arhgef11 protein_coding protein_coding MGP_CASTEiJ_T0061407.1 MGP_CASTEiJ_G0026528.1 mouse_genomes_project 3 87316267 87443981 + MGP_CASTEiJ_P0061407 Arhgef11 protein_coding protein_coding MGP_CASTEiJ_T0061408.1 MGP_CASTEiJ_G0026528.1 mouse_genomes_project 3 87316274 87421963 + Arhgef11 protein_coding retained_intron MGP_CASTEiJ_T0061409.1 MGP_CASTEiJ_G0026528.1 mouse_genomes_project 3 87316782 87446106 + MGP_CASTEiJ_P0061409 Arhgef11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061410.1 MGP_CASTEiJ_G0026528.1 mouse_genomes_project 3 87317450 87446034 + MGP_CASTEiJ_P0061410 Arhgef11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064102.1 MGP_CASTEiJ_G0027109.1 mouse_genomes_project 3 147010544 147030740 - MGP_CASTEiJ_P0064102 Clca3b protein_coding protein_coding MGP_CASTEiJ_T0013919.1 MGP_CASTEiJ_G0012082.1 mouse_genomes_project 3 155575824 155575991 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004184.1 MGP_CASTEiJ_G0003679.1 mouse_genomes_project 3 99815135 99822206 - Spag17os antisense antisense MGP_CASTEiJ_T0004185.1 MGP_CASTEiJ_G0003679.1 mouse_genomes_project 3 99817110 99822206 - Spag17os antisense antisense MGP_CASTEiJ_T0001210.1 MGP_CASTEiJ_G0001141.1 mouse_genomes_project 3 90318965 90321688 + TEC TEC MGP_CASTEiJ_T0060215.1 MGP_CASTEiJ_G0026284.1 mouse_genomes_project 3 26086790 26123320 + MGP_CASTEiJ_P0060215 Slc2a2 protein_coding protein_coding MGP_CASTEiJ_T0060216.1 MGP_CASTEiJ_G0026284.1 mouse_genomes_project 3 26086904 26119469 + MGP_CASTEiJ_P0060216 Slc2a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060217.1 MGP_CASTEiJ_G0026284.1 mouse_genomes_project 3 26113495 26120317 + Slc2a2 protein_coding retained_intron MGP_CASTEiJ_T0007547.1 MGP_CASTEiJ_G0006190.1 mouse_genomes_project 3 145435809 145437431 + Gm43613 lincRNA lincRNA MGP_CASTEiJ_T0010216.1 MGP_CASTEiJ_G0008404.1 mouse_genomes_project 3 25811067 25811159 + Mir466q miRNA miRNA MGP_CASTEiJ_T0007267.1 MGP_CASTEiJ_G0005973.1 mouse_genomes_project 3 7097146 7127385 + Gm16337 lincRNA lincRNA MGP_CASTEiJ_T0060889.1 MGP_CASTEiJ_G0026406.1 mouse_genomes_project 3 57203908 57234938 - MGP_CASTEiJ_P0060889 Erich6 protein_coding protein_coding MGP_CASTEiJ_T0011202.1 MGP_CASTEiJ_G0009390.1 mouse_genomes_project 3 16540469 16540781 + Gm22282 misc_RNA misc_RNA MGP_CASTEiJ_T0099700.1 MGP_CASTEiJ_G0036613.1 mouse_genomes_project 3 57589191 57589363 - Gm25572 snRNA snRNA MGP_CASTEiJ_T0063199.1 MGP_CASTEiJ_G0026944.1 mouse_genomes_project 3 109217567 109265204 - MGP_CASTEiJ_P0063199 Stxbp3 protein_coding protein_coding MGP_CASTEiJ_T0063200.1 MGP_CASTEiJ_G0026944.1 mouse_genomes_project 3 109218789 109226850 - Stxbp3 protein_coding retained_intron MGP_CASTEiJ_T0063201.1 MGP_CASTEiJ_G0026944.1 mouse_genomes_project 3 109219232 109222083 - Stxbp3 protein_coding retained_intron MGP_CASTEiJ_T0063202.1 MGP_CASTEiJ_G0026944.1 mouse_genomes_project 3 109224408 109229983 - Stxbp3 protein_coding retained_intron MGP_CASTEiJ_T0063203.1 MGP_CASTEiJ_G0026944.1 mouse_genomes_project 3 109236094 109265144 - MGP_CASTEiJ_P0063203 Stxbp3 protein_coding protein_coding MGP_CASTEiJ_T0063204.1 MGP_CASTEiJ_G0026944.1 mouse_genomes_project 3 109246868 109265208 - Stxbp3 protein_coding processed_transcript MGP_CASTEiJ_T0063205.1 MGP_CASTEiJ_G0026944.1 mouse_genomes_project 3 109249616 109265219 - MGP_CASTEiJ_P0063205 Stxbp3 protein_coding protein_coding MGP_CASTEiJ_T0063206.1 MGP_CASTEiJ_G0026944.1 mouse_genomes_project 3 109250693 109265203 - MGP_CASTEiJ_P0063206 Stxbp3 protein_coding protein_coding MGP_CASTEiJ_T0004282.1 MGP_CASTEiJ_G0003742.1 mouse_genomes_project 3 157520166 157522859 - Gm20389 antisense antisense MGP_CASTEiJ_T0061631.1 MGP_CASTEiJ_G0026566.1 mouse_genomes_project 3 88443968 88445213 - MGP_CASTEiJ_P0061631 Rxfp4 protein_coding protein_coding MGP_CASTEiJ_T0062812.1 MGP_CASTEiJ_G0026851.1 mouse_genomes_project 3 103151960 103241468 + MGP_CASTEiJ_P0062812 Trim33 protein_coding protein_coding MGP_CASTEiJ_T0062813.1 MGP_CASTEiJ_G0026851.1 mouse_genomes_project 3 103152451 103235974 + MGP_CASTEiJ_P0062813 Trim33 protein_coding protein_coding MGP_CASTEiJ_T0062814.1 MGP_CASTEiJ_G0026851.1 mouse_genomes_project 3 103192269 103209985 + MGP_CASTEiJ_P0062814 Trim33 protein_coding protein_coding MGP_CASTEiJ_T0062815.1 MGP_CASTEiJ_G0026851.1 mouse_genomes_project 3 103202283 103207234 + Trim33 protein_coding retained_intron MGP_CASTEiJ_T0062816.1 MGP_CASTEiJ_G0026851.1 mouse_genomes_project 3 103206891 103208240 + Trim33 protein_coding retained_intron MGP_CASTEiJ_T0062817.1 MGP_CASTEiJ_G0026851.1 mouse_genomes_project 3 103206983 103234385 + MGP_CASTEiJ_P0062817 Trim33 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0100940.1 MGP_CASTEiJ_G0037853.1 mouse_genomes_project 3 8378632 8378764 - Gm22795 snoRNA snoRNA MGP_CASTEiJ_T0007522.1 MGP_CASTEiJ_G0006167.1 mouse_genomes_project 3 135394242 135404044 - lincRNA lincRNA MGP_CASTEiJ_T0004221.1 MGP_CASTEiJ_G0003697.1 mouse_genomes_project 3 110728381 110732098 + C130013H08Rik antisense antisense MGP_CASTEiJ_T0007428.1 MGP_CASTEiJ_G0006089.1 mouse_genomes_project 3 91285472 91287750 + Gm43736 lincRNA lincRNA MGP_CASTEiJ_T0001272.1 MGP_CASTEiJ_G0001203.1 mouse_genomes_project 3 127876402 127880076 + TEC TEC MGP_CASTEiJ_T0060031.1 MGP_CASTEiJ_G0026244.1 mouse_genomes_project 3 11954309 11996130 + MGP_CASTEiJ_P0060031 Lrrcc1 protein_coding protein_coding MGP_CASTEiJ_T0060032.1 MGP_CASTEiJ_G0026244.1 mouse_genomes_project 3 11954344 11988906 + MGP_CASTEiJ_P0060032 Lrrcc1 protein_coding protein_coding MGP_CASTEiJ_T0060033.1 MGP_CASTEiJ_G0026244.1 mouse_genomes_project 3 11954345 11986675 + MGP_CASTEiJ_P0060033 Lrrcc1 protein_coding protein_coding MGP_CASTEiJ_T0060034.1 MGP_CASTEiJ_G0026244.1 mouse_genomes_project 3 11954400 11982735 + MGP_CASTEiJ_P0060034 Lrrcc1 protein_coding protein_coding MGP_CASTEiJ_T0060035.1 MGP_CASTEiJ_G0026244.1 mouse_genomes_project 3 11954455 11971984 + MGP_CASTEiJ_P0060035 Lrrcc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060036.1 MGP_CASTEiJ_G0026244.1 mouse_genomes_project 3 11968614 11986978 + MGP_CASTEiJ_P0060036 Lrrcc1 protein_coding protein_coding MGP_CASTEiJ_T0060037.1 MGP_CASTEiJ_G0026244.1 mouse_genomes_project 3 11968690 11974985 + MGP_CASTEiJ_P0060037 Lrrcc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060038.1 MGP_CASTEiJ_G0026244.1 mouse_genomes_project 3 11970878 11979823 + MGP_CASTEiJ_P0060038 Lrrcc1 protein_coding protein_coding MGP_CASTEiJ_T0061789.1 MGP_CASTEiJ_G0026590.1 mouse_genomes_project 3 89161500 89169324 - MGP_CASTEiJ_P0061789 Efna1 protein_coding protein_coding MGP_CASTEiJ_T0061790.1 MGP_CASTEiJ_G0026590.1 mouse_genomes_project 3 89161509 89169423 - MGP_CASTEiJ_P0061790 Efna1 protein_coding protein_coding MGP_CASTEiJ_T0099760.1 MGP_CASTEiJ_G0036673.1 mouse_genomes_project 3 148716431 148716534 - Gm22078 snRNA snRNA MGP_CASTEiJ_T0060713.1 MGP_CASTEiJ_G0026371.1 mouse_genomes_project 3 51335146 51374027 - MGP_CASTEiJ_P0060713 Cog6 protein_coding protein_coding MGP_CASTEiJ_T0060714.1 MGP_CASTEiJ_G0026371.1 mouse_genomes_project 3 51335393 51351354 - Cog6 protein_coding retained_intron MGP_CASTEiJ_T0060715.1 MGP_CASTEiJ_G0026371.1 mouse_genomes_project 3 51337998 51374006 - MGP_CASTEiJ_P0060715 Cog6 protein_coding protein_coding MGP_CASTEiJ_T0060716.1 MGP_CASTEiJ_G0026371.1 mouse_genomes_project 3 51343972 51374038 - MGP_CASTEiJ_P0060716 Cog6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0060717.1 MGP_CASTEiJ_G0026371.1 mouse_genomes_project 3 51346680 51374008 - MGP_CASTEiJ_P0060717 Cog6 protein_coding protein_coding MGP_CASTEiJ_T0060718.1 MGP_CASTEiJ_G0026371.1 mouse_genomes_project 3 51352512 51374000 - Cog6 protein_coding retained_intron MGP_CASTEiJ_T0060719.1 MGP_CASTEiJ_G0026371.1 mouse_genomes_project 3 51367126 51374002 - Cog6 protein_coding retained_intron MGP_CASTEiJ_T0010258.1 MGP_CASTEiJ_G0008446.1 mouse_genomes_project 3 119159054 119159127 + Mir137 miRNA miRNA MGP_CASTEiJ_T0060518.1 MGP_CASTEiJ_G0026338.1 mouse_genomes_project 3 35071039 35124580 + MGP_CASTEiJ_P0060518 Fgf2 protein_coding protein_coding MGP_CASTEiJ_T0060519.1 MGP_CASTEiJ_G0026338.1 mouse_genomes_project 3 35071346 35129322 + MGP_CASTEiJ_P0060519 Fgf2 protein_coding protein_coding MGP_CASTEiJ_T0060520.1 MGP_CASTEiJ_G0026338.1 mouse_genomes_project 3 35071543 35124004 + MGP_CASTEiJ_P0060520 Fgf2 protein_coding protein_coding MGP_CASTEiJ_T0060521.1 MGP_CASTEiJ_G0026338.1 mouse_genomes_project 3 35090190 35124004 + Fgf2 protein_coding processed_transcript MGP_CASTEiJ_T0060522.1 MGP_CASTEiJ_G0026338.1 mouse_genomes_project 3 35104815 35124004 + Fgf2 protein_coding processed_transcript MGP_CASTEiJ_T0060523.1 MGP_CASTEiJ_G0026338.1 mouse_genomes_project 3 35104911 35124004 + MGP_CASTEiJ_P0060523 Fgf2 protein_coding protein_coding MGP_CASTEiJ_T0060524.1 MGP_CASTEiJ_G0026338.1 mouse_genomes_project 3 35104911 35124004 + MGP_CASTEiJ_P0060524 Fgf2 protein_coding protein_coding MGP_CASTEiJ_T0060525.1 MGP_CASTEiJ_G0026338.1 mouse_genomes_project 3 35123747 35124004 + Fgf2 protein_coding retained_intron MGP_CASTEiJ_T0063447.1 MGP_CASTEiJ_G0026992.1 mouse_genomes_project 3 122862978 122888200 + MGP_CASTEiJ_P0063447 Arhgap29 protein_coding protein_coding MGP_CASTEiJ_T0063448.1 MGP_CASTEiJ_G0026992.1 mouse_genomes_project 3 122863666 122932922 + MGP_CASTEiJ_P0063448 Arhgap29 protein_coding protein_coding MGP_CASTEiJ_T0063449.1 MGP_CASTEiJ_G0026992.1 mouse_genomes_project 3 122863667 122905010 + MGP_CASTEiJ_P0063449 Arhgap29 protein_coding protein_coding MGP_CASTEiJ_T0063450.1 MGP_CASTEiJ_G0026992.1 mouse_genomes_project 3 122882057 122931146 + MGP_CASTEiJ_P0063450 Arhgap29 protein_coding protein_coding MGP_CASTEiJ_T0063451.1 MGP_CASTEiJ_G0026992.1 mouse_genomes_project 3 122882083 122908881 + MGP_CASTEiJ_P0063451 Arhgap29 protein_coding protein_coding MGP_CASTEiJ_T0063452.1 MGP_CASTEiJ_G0026992.1 mouse_genomes_project 3 122882083 122926031 + MGP_CASTEiJ_P0063452 Arhgap29 protein_coding protein_coding MGP_CASTEiJ_T0063453.1 MGP_CASTEiJ_G0026992.1 mouse_genomes_project 3 122897646 122908976 + Arhgap29 protein_coding retained_intron MGP_CASTEiJ_T0063454.1 MGP_CASTEiJ_G0026992.1 mouse_genomes_project 3 122904962 122908650 + Arhgap29 protein_coding retained_intron MGP_CASTEiJ_T0063455.1 MGP_CASTEiJ_G0026992.1 mouse_genomes_project 3 122919104 122921938 + Arhgap29 protein_coding retained_intron MGP_CASTEiJ_T0013564.1 MGP_CASTEiJ_G0011727.1 mouse_genomes_project 3 34519066 34519673 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062016.1 MGP_CASTEiJ_G0026629.1 mouse_genomes_project 3 90519162 90522523 - MGP_CASTEiJ_P0062016 S100a1 protein_coding protein_coding MGP_CASTEiJ_T0062017.1 MGP_CASTEiJ_G0026629.1 mouse_genomes_project 3 90519165 90522408 - MGP_CASTEiJ_P0062017 S100a1 protein_coding protein_coding MGP_CASTEiJ_T0007562.1 MGP_CASTEiJ_G0006203.1 mouse_genomes_project 3 146421280 146422376 + Gm43446 lincRNA lincRNA MGP_CASTEiJ_T0061210.1 MGP_CASTEiJ_G0026480.1 mouse_genomes_project 3 78917008 79018923 - MGP_CASTEiJ_P0061210 Rxfp1 protein_coding protein_coding MGP_CASTEiJ_T0061211.1 MGP_CASTEiJ_G0026480.1 mouse_genomes_project 3 78920826 79018975 - MGP_CASTEiJ_P0061211 Rxfp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061212.1 MGP_CASTEiJ_G0026480.1 mouse_genomes_project 3 78928360 78930252 - Rxfp1 protein_coding retained_intron MGP_CASTEiJ_T0061213.1 MGP_CASTEiJ_G0026480.1 mouse_genomes_project 3 78932033 78947991 - Rxfp1 protein_coding processed_transcript MGP_CASTEiJ_T0100960.1 MGP_CASTEiJ_G0037873.1 mouse_genomes_project 3 63146909 63147067 - Gm23897 snoRNA snoRNA MGP_CASTEiJ_T0007395.1 MGP_CASTEiJ_G0006069.1 mouse_genomes_project 3 79594822 79646228 - Gm37971 lincRNA lincRNA MGP_CASTEiJ_T0063323.1 MGP_CASTEiJ_G0026969.1 mouse_genomes_project 3 117140122 117152044 + Lrrc39 protein_coding retained_intron MGP_CASTEiJ_T0063324.1 MGP_CASTEiJ_G0026969.1 mouse_genomes_project 3 117140127 117161797 + MGP_CASTEiJ_P0063324 Lrrc39 protein_coding protein_coding MGP_CASTEiJ_T0063969.1 MGP_CASTEiJ_G0027084.1 mouse_genomes_project 3 140082760 140100468 + MGP_CASTEiJ_P0063969 Adh6a protein_coding protein_coding MGP_CASTEiJ_T0063970.1 MGP_CASTEiJ_G0027084.1 mouse_genomes_project 3 140082760 140101078 + MGP_CASTEiJ_P0063970 Adh6a protein_coding protein_coding MGP_CASTEiJ_T0098912.1 MGP_CASTEiJ_G0035836.1 mouse_genomes_project 3 104072178 104073819 - Gm42701 sense_intronic sense_intronic MGP_CASTEiJ_T0063020.1 MGP_CASTEiJ_G0026895.1 mouse_genomes_project 3 107054997 107085257 - MGP_CASTEiJ_P0063020 Cd53 protein_coding protein_coding MGP_CASTEiJ_T0100973.1 MGP_CASTEiJ_G0037886.1 mouse_genomes_project 3 86729835 86729960 + Gm24472 snoRNA snoRNA MGP_CASTEiJ_T0001347.1 MGP_CASTEiJ_G0001277.1 mouse_genomes_project 3 160977185 160979659 - TEC TEC MGP_CASTEiJ_T0098902.1 MGP_CASTEiJ_G0035826.1 mouse_genomes_project 3 103506795 103508068 + Gm43066 sense_intronic sense_intronic MGP_CASTEiJ_T0007550.1 MGP_CASTEiJ_G0006193.1 mouse_genomes_project 3 145690937 145692402 - Gm43616 lincRNA lincRNA MGP_CASTEiJ_T0004176.1 MGP_CASTEiJ_G0003673.1 mouse_genomes_project 3 95834514 95838630 - Gm20628 antisense antisense MGP_CASTEiJ_T0098885.1 MGP_CASTEiJ_G0035809.1 mouse_genomes_project 3 98830589 98834922 + Gm43024 sense_intronic sense_intronic MGP_CASTEiJ_T0007543.1 MGP_CASTEiJ_G0006187.1 mouse_genomes_project 3 145118562 145137126 + 4930519L02Rik lincRNA lincRNA MGP_CASTEiJ_T0099755.1 MGP_CASTEiJ_G0036668.1 mouse_genomes_project 3 139448721 139448826 + Gm25080 snRNA snRNA MGP_CASTEiJ_T0062295.1 MGP_CASTEiJ_G0026728.1 mouse_genomes_project 3 94632760 94670610 - MGP_CASTEiJ_P0062295 Gabpb2 protein_coding protein_coding MGP_CASTEiJ_T0062296.1 MGP_CASTEiJ_G0026728.1 mouse_genomes_project 3 94632760 94670403 - MGP_CASTEiJ_P0062296 Gabpb2 protein_coding protein_coding MGP_CASTEiJ_T0062297.1 MGP_CASTEiJ_G0026728.1 mouse_genomes_project 3 94632767 94661626 - MGP_CASTEiJ_P0062297 Gabpb2 protein_coding protein_coding MGP_CASTEiJ_T0062298.1 MGP_CASTEiJ_G0026728.1 mouse_genomes_project 3 94638588 94642851 - Gabpb2 protein_coding retained_intron MGP_CASTEiJ_T0062299.1 MGP_CASTEiJ_G0026728.1 mouse_genomes_project 3 94638724 94670403 - Gabpb2 protein_coding retained_intron MGP_CASTEiJ_T0062300.1 MGP_CASTEiJ_G0026728.1 mouse_genomes_project 3 94648313 94670610 - Gabpb2 protein_coding retained_intron MGP_CASTEiJ_T0062301.1 MGP_CASTEiJ_G0026728.1 mouse_genomes_project 3 94650413 94670610 - Gabpb2 protein_coding retained_intron MGP_CASTEiJ_T0062302.1 MGP_CASTEiJ_G0026728.1 mouse_genomes_project 3 94653860 94670448 - MGP_CASTEiJ_P0062302 Gabpb2 protein_coding protein_coding MGP_CASTEiJ_T0062303.1 MGP_CASTEiJ_G0026728.1 mouse_genomes_project 3 94667661 94670388 - Gabpb2 protein_coding processed_transcript MGP_CASTEiJ_T0001229.1 MGP_CASTEiJ_G0001160.1 mouse_genomes_project 3 106865124 106867156 + TEC TEC MGP_CASTEiJ_T0001247.1 MGP_CASTEiJ_G0001178.1 mouse_genomes_project 3 121877543 121877834 - TEC TEC MGP_CASTEiJ_T0007501.1 MGP_CASTEiJ_G0006148.1 mouse_genomes_project 3 125886291 125992638 + Gm42825 lincRNA lincRNA MGP_CASTEiJ_T0101002.1 MGP_CASTEiJ_G0037915.1 mouse_genomes_project 3 144890961 144891054 + Gm25965 snoRNA snoRNA MGP_CASTEiJ_T0013871.1 MGP_CASTEiJ_G0012034.1 mouse_genomes_project 3 136731901 136732491 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062124.1 MGP_CASTEiJ_G0026698.1 mouse_genomes_project 3 93719785 93743812 + MGP_CASTEiJ_P0062124 Them4 protein_coding protein_coding MGP_CASTEiJ_T0062125.1 MGP_CASTEiJ_G0026698.1 mouse_genomes_project 3 93719826 93728513 + Them4 protein_coding retained_intron MGP_CASTEiJ_T0062126.1 MGP_CASTEiJ_G0026698.1 mouse_genomes_project 3 93719832 93736385 + Them4 protein_coding retained_intron MGP_CASTEiJ_T0013895.1 MGP_CASTEiJ_G0012058.1 mouse_genomes_project 3 142514912 142515165 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060093.1 MGP_CASTEiJ_G0026265.1 mouse_genomes_project 3 17181669 17236363 + MGP_CASTEiJ_P0060093 Cp protein_coding protein_coding MGP_CASTEiJ_T0060094.1 MGP_CASTEiJ_G0026265.1 mouse_genomes_project 3 17181669 17219095 + MGP_CASTEiJ_P0060094 Cp protein_coding protein_coding MGP_CASTEiJ_T0060095.1 MGP_CASTEiJ_G0026265.1 mouse_genomes_project 3 17181676 17194454 + Cp protein_coding retained_intron MGP_CASTEiJ_T0060096.1 MGP_CASTEiJ_G0026265.1 mouse_genomes_project 3 17181684 17237920 + MGP_CASTEiJ_P0060096 Cp protein_coding protein_coding MGP_CASTEiJ_T0060097.1 MGP_CASTEiJ_G0026265.1 mouse_genomes_project 3 17181726 17236363 + MGP_CASTEiJ_P0060097 Cp protein_coding protein_coding MGP_CASTEiJ_T0060098.1 MGP_CASTEiJ_G0026265.1 mouse_genomes_project 3 17181833 17194123 + Cp protein_coding retained_intron MGP_CASTEiJ_T0060099.1 MGP_CASTEiJ_G0026265.1 mouse_genomes_project 3 17181899 17218471 + MGP_CASTEiJ_P0060099 Cp protein_coding protein_coding MGP_CASTEiJ_T0060100.1 MGP_CASTEiJ_G0026265.1 mouse_genomes_project 3 17194958 17215096 + Cp protein_coding retained_intron MGP_CASTEiJ_T0060101.1 MGP_CASTEiJ_G0026265.1 mouse_genomes_project 3 17196004 17200827 + Cp protein_coding retained_intron MGP_CASTEiJ_T0060102.1 MGP_CASTEiJ_G0026265.1 mouse_genomes_project 3 17200533 17206716 + Cp protein_coding retained_intron MGP_CASTEiJ_T0060103.1 MGP_CASTEiJ_G0026265.1 mouse_genomes_project 3 17206602 17213420 + MGP_CASTEiJ_P0060103 Cp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060104.1 MGP_CASTEiJ_G0026265.1 mouse_genomes_project 3 17207424 17209479 + Cp protein_coding retained_intron MGP_CASTEiJ_T0060105.1 MGP_CASTEiJ_G0026265.1 mouse_genomes_project 3 17208001 17211893 + MGP_CASTEiJ_P0060105 Cp protein_coding protein_coding MGP_CASTEiJ_T0060106.1 MGP_CASTEiJ_G0026265.1 mouse_genomes_project 3 17211601 17218528 + MGP_CASTEiJ_P0060106 Cp protein_coding protein_coding MGP_CASTEiJ_T0060107.1 MGP_CASTEiJ_G0026265.1 mouse_genomes_project 3 17213568 17215658 + Cp protein_coding retained_intron MGP_CASTEiJ_T0060108.1 MGP_CASTEiJ_G0026265.1 mouse_genomes_project 3 17215182 17235140 + MGP_CASTEiJ_P0060108 Cp protein_coding protein_coding MGP_CASTEiJ_T0100964.1 MGP_CASTEiJ_G0037877.1 mouse_genomes_project 3 74789860 74789996 + Gm25846 snoRNA snoRNA MGP_CASTEiJ_T0063038.1 MGP_CASTEiJ_G0026906.1 mouse_genomes_project 3 107776314 107797531 - MGP_CASTEiJ_P0063038 Kcnc4 protein_coding protein_coding MGP_CASTEiJ_T0007352.1 MGP_CASTEiJ_G0006036.1 mouse_genomes_project 3 50478702 50486456 - Gm30074 lincRNA lincRNA MGP_CASTEiJ_T0063517.1 MGP_CASTEiJ_G0027004.1 mouse_genomes_project 3 124274306 124377613 + MGP_CASTEiJ_P0063517 Sec24d protein_coding protein_coding MGP_CASTEiJ_T0063518.1 MGP_CASTEiJ_G0027004.1 mouse_genomes_project 3 124274330 124285132 + Sec24d protein_coding retained_intron MGP_CASTEiJ_T0063519.1 MGP_CASTEiJ_G0027004.1 mouse_genomes_project 3 124274341 124281307 + MGP_CASTEiJ_P0063519 Sec24d protein_coding protein_coding MGP_CASTEiJ_T0063520.1 MGP_CASTEiJ_G0027004.1 mouse_genomes_project 3 124274413 124373087 + MGP_CASTEiJ_P0063520 Sec24d protein_coding unknown_likely_coding MGP_CASTEiJ_T0063521.1 MGP_CASTEiJ_G0027004.1 mouse_genomes_project 3 124297682 124377608 + Sec24d protein_coding retained_intron MGP_CASTEiJ_T0063522.1 MGP_CASTEiJ_G0027004.1 mouse_genomes_project 3 124346203 124348131 + Sec24d protein_coding retained_intron MGP_CASTEiJ_T0063523.1 MGP_CASTEiJ_G0027004.1 mouse_genomes_project 3 124348680 124361787 + Sec24d protein_coding processed_transcript MGP_CASTEiJ_T0063524.1 MGP_CASTEiJ_G0027004.1 mouse_genomes_project 3 124366683 124367741 + Sec24d protein_coding retained_intron MGP_CASTEiJ_T0063525.1 MGP_CASTEiJ_G0027004.1 mouse_genomes_project 3 124376685 124377608 + Sec24d protein_coding retained_intron MGP_CASTEiJ_T0013572.1 MGP_CASTEiJ_G0011735.1 mouse_genomes_project 3 35980991 35981334 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061119.1 MGP_CASTEiJ_G0026458.1 mouse_genomes_project 3 68028850 68030050 + MGP_CASTEiJ_P0061119 Arl14 protein_coding protein_coding MGP_CASTEiJ_T0063374.1 MGP_CASTEiJ_G0026978.1 mouse_genomes_project 3 117569565 117592190 + MGP_CASTEiJ_P0063374 4930455H04Rik protein_coding protein_coding MGP_CASTEiJ_T0001303.1 MGP_CASTEiJ_G0001233.1 mouse_genomes_project 3 134324319 134326291 + TEC TEC MGP_CASTEiJ_T0013772.1 MGP_CASTEiJ_G0011935.1 mouse_genomes_project 3 102234440 102234908 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063870.1 MGP_CASTEiJ_G0027064.1 mouse_genomes_project 3 137128334 137213939 + MGP_CASTEiJ_P0063870 Manba protein_coding protein_coding MGP_CASTEiJ_T0063871.1 MGP_CASTEiJ_G0027064.1 mouse_genomes_project 3 137128334 137198211 + MGP_CASTEiJ_P0063871 Manba protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063872.1 MGP_CASTEiJ_G0027064.1 mouse_genomes_project 3 137128342 137198169 + Manba protein_coding retained_intron MGP_CASTEiJ_T0063873.1 MGP_CASTEiJ_G0027064.1 mouse_genomes_project 3 137128348 137150538 + Manba protein_coding retained_intron MGP_CASTEiJ_T0063874.1 MGP_CASTEiJ_G0027064.1 mouse_genomes_project 3 137155200 137180931 + Manba protein_coding processed_transcript MGP_CASTEiJ_T0063875.1 MGP_CASTEiJ_G0027064.1 mouse_genomes_project 3 137161394 137162586 + Manba protein_coding processed_transcript MGP_CASTEiJ_T0063876.1 MGP_CASTEiJ_G0027064.1 mouse_genomes_project 3 137183222 137190905 + Manba protein_coding retained_intron MGP_CASTEiJ_T0063877.1 MGP_CASTEiJ_G0027064.1 mouse_genomes_project 3 137187065 137197411 + Manba protein_coding processed_transcript MGP_CASTEiJ_T0063878.1 MGP_CASTEiJ_G0027064.1 mouse_genomes_project 3 137189904 137199399 + Manba protein_coding processed_transcript MGP_CASTEiJ_T0063879.1 MGP_CASTEiJ_G0027064.1 mouse_genomes_project 3 137189974 137205827 + Manba protein_coding processed_transcript MGP_CASTEiJ_T0063881.1 MGP_CASTEiJ_G0027064.1 mouse_genomes_project 3 137205787 137210110 + Manba protein_coding processed_transcript MGP_CASTEiJ_T0007574.1 MGP_CASTEiJ_G0006213.1 mouse_genomes_project 3 151723553 151902089 - Gm30382 lincRNA lincRNA MGP_CASTEiJ_T0007575.1 MGP_CASTEiJ_G0006213.1 mouse_genomes_project 3 151724010 151766259 - Gm30382 lincRNA lincRNA MGP_CASTEiJ_T0007577.1 MGP_CASTEiJ_G0006213.1 mouse_genomes_project 3 151754230 151902114 - Gm30382 lincRNA lincRNA MGP_CASTEiJ_T0004147.1 MGP_CASTEiJ_G0003652.1 mouse_genomes_project 3 88470607 88472019 - Gm43714 antisense antisense MGP_CASTEiJ_T0062612.1 MGP_CASTEiJ_G0026802.1 mouse_genomes_project 3 97304964 97317558 + MGP_CASTEiJ_P0062612 Prkab2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062613.1 MGP_CASTEiJ_G0026802.1 mouse_genomes_project 3 97304983 97320566 + MGP_CASTEiJ_P0062613 Prkab2 protein_coding protein_coding MGP_CASTEiJ_T0062614.1 MGP_CASTEiJ_G0026802.1 mouse_genomes_project 3 97304985 97317692 + MGP_CASTEiJ_P0062614 Prkab2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062615.1 MGP_CASTEiJ_G0026802.1 mouse_genomes_project 3 97305168 97320569 + MGP_CASTEiJ_P0062615 Prkab2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0062616.1 MGP_CASTEiJ_G0026802.1 mouse_genomes_project 3 97313293 97319859 + Prkab2 protein_coding retained_intron MGP_CASTEiJ_T0062617.1 MGP_CASTEiJ_G0026802.1 mouse_genomes_project 3 97314103 97319835 + Prkab2 protein_coding retained_intron MGP_CASTEiJ_T0062618.1 MGP_CASTEiJ_G0026802.1 mouse_genomes_project 3 97316957 97317807 + Prkab2 protein_coding processed_transcript MGP_CASTEiJ_T0062321.1 MGP_CASTEiJ_G0026733.1 mouse_genomes_project 3 94714316 94746648 - MGP_CASTEiJ_P0062321 Prune protein_coding protein_coding MGP_CASTEiJ_T0062322.1 MGP_CASTEiJ_G0026733.1 mouse_genomes_project 3 94728051 94731883 - Prune protein_coding retained_intron MGP_CASTEiJ_T0061354.1 MGP_CASTEiJ_G0026515.1 mouse_genomes_project 3 85584141 85704914 + Sh3d19 protein_coding processed_transcript MGP_CASTEiJ_T0061356.1 MGP_CASTEiJ_G0026515.1 mouse_genomes_project 3 85656897 85704670 + Sh3d19 protein_coding processed_transcript MGP_CASTEiJ_T0061357.1 MGP_CASTEiJ_G0026515.1 mouse_genomes_project 3 85658639 85704958 + Sh3d19 protein_coding processed_transcript MGP_CASTEiJ_T0061358.1 MGP_CASTEiJ_G0026515.1 mouse_genomes_project 3 85658747 85704947 + Sh3d19 protein_coding processed_transcript MGP_CASTEiJ_T0061359.1 MGP_CASTEiJ_G0026515.1 mouse_genomes_project 3 85699047 85751149 + MGP_CASTEiJ_P0061359 Sh3d19 protein_coding protein_coding MGP_CASTEiJ_T0061360.1 MGP_CASTEiJ_G0026515.1 mouse_genomes_project 3 85749766 85753562 + Sh3d19 protein_coding retained_intron MGP_CASTEiJ_T0062023.1 MGP_CASTEiJ_G0026632.1 mouse_genomes_project 3 90548388 90554278 + MGP_CASTEiJ_P0062023 S100a16 protein_coding protein_coding MGP_CASTEiJ_T0062024.1 MGP_CASTEiJ_G0026632.1 mouse_genomes_project 3 90548449 90554144 + MGP_CASTEiJ_P0062024 S100a16 protein_coding protein_coding MGP_CASTEiJ_T0062025.1 MGP_CASTEiJ_G0026632.1 mouse_genomes_project 3 90548459 90553865 + S100a16 protein_coding processed_transcript MGP_CASTEiJ_T0062026.1 MGP_CASTEiJ_G0026632.1 mouse_genomes_project 3 90550016 90554057 + MGP_CASTEiJ_P0062026 S100a16 protein_coding protein_coding MGP_CASTEiJ_T0062027.1 MGP_CASTEiJ_G0026632.1 mouse_genomes_project 3 90550418 90553559 + MGP_CASTEiJ_P0062027 S100a16 protein_coding protein_coding MGP_CASTEiJ_T0062028.1 MGP_CASTEiJ_G0026632.1 mouse_genomes_project 3 90552281 90553878 + MGP_CASTEiJ_P0062028 S100a16 protein_coding protein_coding MGP_CASTEiJ_T0062029.1 MGP_CASTEiJ_G0026632.1 mouse_genomes_project 3 90552284 90553992 + MGP_CASTEiJ_P0062029 S100a16 protein_coding protein_coding MGP_CASTEiJ_T0062030.1 MGP_CASTEiJ_G0026632.1 mouse_genomes_project 3 90552296 90554281 + MGP_CASTEiJ_P0062030 S100a16 protein_coding protein_coding MGP_CASTEiJ_T0062144.1 MGP_CASTEiJ_G0026704.1 mouse_genomes_project 3 93848763 93852767 - protein_coding retained_intron MGP_CASTEiJ_T0062145.1 MGP_CASTEiJ_G0026704.1 mouse_genomes_project 3 93851264 93856360 - MGP_CASTEiJ_P0062145 protein_coding protein_coding MGP_CASTEiJ_T0062146.1 MGP_CASTEiJ_G0026704.1 mouse_genomes_project 3 93851485 93863529 - MGP_CASTEiJ_P0062146 protein_coding protein_coding MGP_CASTEiJ_T0062147.1 MGP_CASTEiJ_G0026704.1 mouse_genomes_project 3 93851485 93863447 - MGP_CASTEiJ_P0062147 protein_coding protein_coding MGP_CASTEiJ_T0062148.1 MGP_CASTEiJ_G0026704.1 mouse_genomes_project 3 93851485 93853216 - MGP_CASTEiJ_P0062148 protein_coding protein_coding MGP_CASTEiJ_T0062149.1 MGP_CASTEiJ_G0026704.1 mouse_genomes_project 3 93851485 93856311 - MGP_CASTEiJ_P0062149 protein_coding protein_coding MGP_CASTEiJ_T0062150.1 MGP_CASTEiJ_G0026704.1 mouse_genomes_project 3 93851485 93856381 - MGP_CASTEiJ_P0062150 protein_coding protein_coding MGP_CASTEiJ_T0062151.1 MGP_CASTEiJ_G0026704.1 mouse_genomes_project 3 93853214 93856507 - protein_coding retained_intron MGP_CASTEiJ_T0061992.1 MGP_CASTEiJ_G0026625.1 mouse_genomes_project 3 90451389 90467049 - MGP_CASTEiJ_P0061992 Npr1 protein_coding protein_coding MGP_CASTEiJ_T0061993.1 MGP_CASTEiJ_G0026625.1 mouse_genomes_project 3 90451508 90452576 - Npr1 protein_coding retained_intron MGP_CASTEiJ_T0061994.1 MGP_CASTEiJ_G0026625.1 mouse_genomes_project 3 90455970 90458748 - Npr1 protein_coding processed_transcript MGP_CASTEiJ_T0061995.1 MGP_CASTEiJ_G0026625.1 mouse_genomes_project 3 90458670 90460211 - Npr1 protein_coding retained_intron MGP_CASTEiJ_T0061996.1 MGP_CASTEiJ_G0026625.1 mouse_genomes_project 3 90458689 90462600 - MGP_CASTEiJ_P0061996 Npr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0100955.1 MGP_CASTEiJ_G0037868.1 mouse_genomes_project 3 49049140 49049275 - Gm24503 snoRNA snoRNA MGP_CASTEiJ_T0062493.1 MGP_CASTEiJ_G0026764.1 mouse_genomes_project 3 95759601 95762948 - MGP_CASTEiJ_P0062493 Hist2h2ac protein_coding protein_coding MGP_CASTEiJ_T0063823.1 MGP_CASTEiJ_G0027057.1 mouse_genomes_project 3 136428300 136535652 + MGP_CASTEiJ_P0063823 Tacr3 protein_coding protein_coding MGP_CASTEiJ_T0063824.1 MGP_CASTEiJ_G0027057.1 mouse_genomes_project 3 136428463 136533756 + MGP_CASTEiJ_P0063824 Tacr3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0063378.1 MGP_CASTEiJ_G0026980.1 mouse_genomes_project 3 118225439 118345151 + MGP_CASTEiJ_P0063378 Plppr5 protein_coding protein_coding MGP_CASTEiJ_T0063379.1 MGP_CASTEiJ_G0026980.1 mouse_genomes_project 3 118225830 118345151 + MGP_CASTEiJ_P0063379 Plppr5 protein_coding protein_coding MGP_CASTEiJ_T0013774.1 MGP_CASTEiJ_G0011937.1 mouse_genomes_project 3 102524661 102524788 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100956.1 MGP_CASTEiJ_G0037869.1 mouse_genomes_project 3 51887840 51887965 + Gm23675 snoRNA snoRNA MGP_CASTEiJ_T0062235.1 MGP_CASTEiJ_G0026718.1 mouse_genomes_project 3 94446351 94451558 - protein_coding retained_intron MGP_CASTEiJ_T0062236.1 MGP_CASTEiJ_G0026718.1 mouse_genomes_project 3 94446593 94454982 - protein_coding retained_intron MGP_CASTEiJ_T0062237.1 MGP_CASTEiJ_G0026718.1 mouse_genomes_project 3 94446593 94455163 - protein_coding retained_intron MGP_CASTEiJ_T0062238.1 MGP_CASTEiJ_G0026718.1 mouse_genomes_project 3 94446598 94455196 - MGP_CASTEiJ_P0062238 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0062239.1 MGP_CASTEiJ_G0026718.1 mouse_genomes_project 3 94447236 94455134 - MGP_CASTEiJ_P0062239 protein_coding unknown_likely_coding MGP_CASTEiJ_T0062240.1 MGP_CASTEiJ_G0026718.1 mouse_genomes_project 3 94451590 94455207 - MGP_CASTEiJ_P0062240 protein_coding protein_coding MGP_CASTEiJ_T0062241.1 MGP_CASTEiJ_G0026718.1 mouse_genomes_project 3 94451719 94454983 - MGP_CASTEiJ_P0062241 protein_coding protein_coding MGP_CASTEiJ_T0062242.1 MGP_CASTEiJ_G0026718.1 mouse_genomes_project 3 94451924 94454977 - MGP_CASTEiJ_P0062242 protein_coding protein_coding MGP_CASTEiJ_T0063334.1 MGP_CASTEiJ_G0026971.1 mouse_genomes_project 3 117173582 117199539 + MGP_CASTEiJ_P0063334 Sass6 protein_coding protein_coding MGP_CASTEiJ_T0063335.1 MGP_CASTEiJ_G0026971.1 mouse_genomes_project 3 117173603 117183569 + Sass6 protein_coding processed_transcript MGP_CASTEiJ_T0063336.1 MGP_CASTEiJ_G0026971.1 mouse_genomes_project 3 117173612 117210346 + MGP_CASTEiJ_P0063336 Sass6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063337.1 MGP_CASTEiJ_G0026971.1 mouse_genomes_project 3 117173714 117208346 + MGP_CASTEiJ_P0063337 Sass6 protein_coding protein_coding MGP_CASTEiJ_T0063339.1 MGP_CASTEiJ_G0026971.1 mouse_genomes_project 3 117191285 117197204 + Sass6 protein_coding processed_transcript MGP_CASTEiJ_T0063341.1 MGP_CASTEiJ_G0026971.1 mouse_genomes_project 3 117199395 117207093 + Sass6 protein_coding retained_intron MGP_CASTEiJ_T0063342.1 MGP_CASTEiJ_G0026971.1 mouse_genomes_project 3 117205163 117208664 + Sass6 protein_coding retained_intron MGP_CASTEiJ_T0007287.1 MGP_CASTEiJ_G0005984.1 mouse_genomes_project 3 15677125 15689343 - 4930433B08Rik lincRNA lincRNA MGP_CASTEiJ_T0013840.1 MGP_CASTEiJ_G0012003.1 mouse_genomes_project 3 124789620 124790224 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007487.1 MGP_CASTEiJ_G0006141.1 mouse_genomes_project 3 121474730 121748578 - lincRNA lincRNA MGP_CASTEiJ_T0007488.1 MGP_CASTEiJ_G0006141.1 mouse_genomes_project 3 121566278 121748577 - lincRNA lincRNA MGP_CASTEiJ_T0007489.1 MGP_CASTEiJ_G0006141.1 mouse_genomes_project 3 121569830 121748559 - lincRNA lincRNA MGP_CASTEiJ_T0007490.1 MGP_CASTEiJ_G0006141.1 mouse_genomes_project 3 121638244 121748536 - lincRNA lincRNA MGP_CASTEiJ_T0061718.1 MGP_CASTEiJ_G0026581.1 mouse_genomes_project 3 89063260 89064793 + MGP_CASTEiJ_P0061718 Fam189b protein_coding protein_coding MGP_CASTEiJ_T0061719.1 MGP_CASTEiJ_G0026581.1 mouse_genomes_project 3 89063320 89070404 + MGP_CASTEiJ_P0061719 Fam189b protein_coding protein_coding MGP_CASTEiJ_T0061720.1 MGP_CASTEiJ_G0026581.1 mouse_genomes_project 3 89063321 89070402 + MGP_CASTEiJ_P0061720 Fam189b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061721.1 MGP_CASTEiJ_G0026581.1 mouse_genomes_project 3 89063697 89070403 + MGP_CASTEiJ_P0061721 Fam189b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061722.1 MGP_CASTEiJ_G0026581.1 mouse_genomes_project 3 89063750 89070401 + MGP_CASTEiJ_P0061722 Fam189b protein_coding protein_coding MGP_CASTEiJ_T0061723.1 MGP_CASTEiJ_G0026581.1 mouse_genomes_project 3 89063758 89070408 + MGP_CASTEiJ_P0061723 Fam189b protein_coding protein_coding MGP_CASTEiJ_T0061724.1 MGP_CASTEiJ_G0026581.1 mouse_genomes_project 3 89064346 89065905 + Fam189b protein_coding retained_intron MGP_CASTEiJ_T0061725.1 MGP_CASTEiJ_G0026581.1 mouse_genomes_project 3 89068488 89069591 + Fam189b protein_coding retained_intron MGP_CASTEiJ_T0061726.1 MGP_CASTEiJ_G0026581.1 mouse_genomes_project 3 89069047 89069590 + Fam189b protein_coding retained_intron MGP_CASTEiJ_T0061727.1 MGP_CASTEiJ_G0026581.1 mouse_genomes_project 3 89069097 89069894 + Fam189b protein_coding processed_transcript MGP_CASTEiJ_T0013818.1 MGP_CASTEiJ_G0011981.1 mouse_genomes_project 3 117424352 117424725 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010275.1 MGP_CASTEiJ_G0008463.1 mouse_genomes_project 3 153616707 153616778 - Mir3963 miRNA miRNA MGP_CASTEiJ_T0059980.1 MGP_CASTEiJ_G0026228.1 mouse_genomes_project 3 6743267 6935677 - MGP_CASTEiJ_P0059980 Zfp704 protein_coding protein_coding MGP_CASTEiJ_T0059981.1 MGP_CASTEiJ_G0026228.1 mouse_genomes_project 3 6754598 6889064 - MGP_CASTEiJ_P0059981 Zfp704 protein_coding protein_coding MGP_CASTEiJ_T0059982.1 MGP_CASTEiJ_G0026228.1 mouse_genomes_project 3 6755006 6757359 - Zfp704 protein_coding retained_intron MGP_CASTEiJ_T0059983.1 MGP_CASTEiJ_G0026228.1 mouse_genomes_project 3 6886091 6935345 - MGP_CASTEiJ_P0059983 Zfp704 protein_coding unknown_likely_coding MGP_CASTEiJ_T0060420.1 MGP_CASTEiJ_G0026320.1 mouse_genomes_project 3 33529200 33569909 - MGP_CASTEiJ_P0060420 Dcun1d1 protein_coding protein_coding MGP_CASTEiJ_T0060421.1 MGP_CASTEiJ_G0026320.1 mouse_genomes_project 3 33529444 33558440 - MGP_CASTEiJ_P0060421 Dcun1d1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060422.1 MGP_CASTEiJ_G0026320.1 mouse_genomes_project 3 33531046 33543911 - Dcun1d1 protein_coding processed_transcript MGP_CASTEiJ_T0060423.1 MGP_CASTEiJ_G0026320.1 mouse_genomes_project 3 33543209 33569937 - Dcun1d1 protein_coding processed_transcript MGP_CASTEiJ_T0060424.1 MGP_CASTEiJ_G0026320.1 mouse_genomes_project 3 33551679 33569946 - Dcun1d1 protein_coding retained_intron MGP_CASTEiJ_T0060425.1 MGP_CASTEiJ_G0026320.1 mouse_genomes_project 3 33551847 33558440 - MGP_CASTEiJ_P0060425 Dcun1d1 protein_coding protein_coding MGP_CASTEiJ_T0060426.1 MGP_CASTEiJ_G0026320.1 mouse_genomes_project 3 33554531 33567242 - MGP_CASTEiJ_P0060426 Dcun1d1 protein_coding protein_coding MGP_CASTEiJ_T0060427.1 MGP_CASTEiJ_G0026320.1 mouse_genomes_project 3 33554534 33574541 - MGP_CASTEiJ_P0060427 Dcun1d1 protein_coding protein_coding MGP_CASTEiJ_T0060428.1 MGP_CASTEiJ_G0026320.1 mouse_genomes_project 3 33565640 33568580 - Dcun1d1 protein_coding retained_intron MGP_CASTEiJ_T0102300.1 MGP_CASTEiJ_G0039025.1 mouse_genomes_project 3 144744269 144755145 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0001337.1 MGP_CASTEiJ_G0001267.1 mouse_genomes_project 3 157751456 157755585 + TEC TEC MGP_CASTEiJ_T0099761.1 MGP_CASTEiJ_G0036674.1 mouse_genomes_project 3 151784115 151784221 - Gm26468 snRNA snRNA MGP_CASTEiJ_T0064127.1 MGP_CASTEiJ_G0027113.1 mouse_genomes_project 3 147523286 147808154 + MGP_CASTEiJ_P0064127 Col24a1 protein_coding protein_coding MGP_CASTEiJ_T0064128.1 MGP_CASTEiJ_G0027113.1 mouse_genomes_project 3 147523341 147544920 + MGP_CASTEiJ_P0064128 Col24a1 protein_coding protein_coding MGP_CASTEiJ_T0064129.1 MGP_CASTEiJ_G0027113.1 mouse_genomes_project 3 147769214 147794388 + Col24a1 protein_coding processed_transcript MGP_CASTEiJ_T0064130.1 MGP_CASTEiJ_G0027113.1 mouse_genomes_project 3 147801148 147808149 + Col24a1 protein_coding retained_intron MGP_CASTEiJ_T0013689.1 MGP_CASTEiJ_G0011852.1 mouse_genomes_project 3 76752926 76754131 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101773.1 MGP_CASTEiJ_G0038557.1 mouse_genomes_project 3 58411913 58474810 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101774.1 MGP_CASTEiJ_G0038557.1 mouse_genomes_project 3 58473472 58486291 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0062070.1 MGP_CASTEiJ_G0026656.1 mouse_genomes_project 3 91675491 91677321 + MGP_CASTEiJ_P0062070 Sprr2i protein_coding protein_coding MGP_CASTEiJ_T0013482.1 MGP_CASTEiJ_G0011645.1 mouse_genomes_project 3 6336900 6337222 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063669.1 MGP_CASTEiJ_G0027028.1 mouse_genomes_project 3 131124152 131203503 - MGP_CASTEiJ_P0063669 Egf protein_coding protein_coding MGP_CASTEiJ_T0063670.1 MGP_CASTEiJ_G0027028.1 mouse_genomes_project 3 131124165 131173213 - MGP_CASTEiJ_P0063670 Egf protein_coding protein_coding MGP_CASTEiJ_T0063671.1 MGP_CASTEiJ_G0027028.1 mouse_genomes_project 3 131124167 131173203 - MGP_CASTEiJ_P0063671 Egf protein_coding protein_coding MGP_CASTEiJ_T0063672.1 MGP_CASTEiJ_G0027028.1 mouse_genomes_project 3 131124903 131128143 - Egf protein_coding retained_intron MGP_CASTEiJ_T0063673.1 MGP_CASTEiJ_G0027028.1 mouse_genomes_project 3 131132532 131140432 - Egf protein_coding retained_intron MGP_CASTEiJ_T0063674.1 MGP_CASTEiJ_G0027028.1 mouse_genomes_project 3 131139720 131142631 - Egf protein_coding retained_intron MGP_CASTEiJ_T0063675.1 MGP_CASTEiJ_G0027028.1 mouse_genomes_project 3 131147946 131173212 - MGP_CASTEiJ_P0063675 Egf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063676.1 MGP_CASTEiJ_G0027028.1 mouse_genomes_project 3 131183598 131203503 - Egf protein_coding retained_intron MGP_CASTEiJ_T0063677.1 MGP_CASTEiJ_G0027028.1 mouse_genomes_project 3 131185047 131203503 - Egf protein_coding processed_transcript MGP_CASTEiJ_T0062056.1 MGP_CASTEiJ_G0026645.1 mouse_genomes_project 3 91268486 91271359 - MGP_CASTEiJ_P0062056 Lor protein_coding protein_coding MGP_CASTEiJ_T0010259.1 MGP_CASTEiJ_G0008447.1 mouse_genomes_project 3 119160832 119160942 + Gm24155 miRNA miRNA MGP_CASTEiJ_T0001162.1 MGP_CASTEiJ_G0001093.1 mouse_genomes_project 3 51476526 51477350 + TEC TEC MGP_CASTEiJ_T0001273.1 MGP_CASTEiJ_G0001204.1 mouse_genomes_project 3 127885145 127886999 + TEC TEC MGP_CASTEiJ_T0007386.1 MGP_CASTEiJ_G0006063.1 mouse_genomes_project 3 74721261 74729321 - Platr10 lincRNA lincRNA MGP_CASTEiJ_T0007387.1 MGP_CASTEiJ_G0006063.1 mouse_genomes_project 3 74721655 74722474 - Platr10 lincRNA lincRNA MGP_CASTEiJ_T0001184.1 MGP_CASTEiJ_G0001115.1 mouse_genomes_project 3 64772157 64775124 + TEC TEC MGP_CASTEiJ_T0007321.1 MGP_CASTEiJ_G0006015.1 mouse_genomes_project 3 35356117 35357482 + 4930594O21Rik lincRNA lincRNA MGP_CASTEiJ_T0007322.1 MGP_CASTEiJ_G0006015.1 mouse_genomes_project 3 35356127 35357032 + 4930594O21Rik lincRNA lincRNA MGP_CASTEiJ_T0013778.1 MGP_CASTEiJ_G0011941.1 mouse_genomes_project 3 103605417 103605817 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013463.1 MGP_CASTEiJ_G0011626.1 mouse_genomes_project 3 1094599 1094918 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007323.1 MGP_CASTEiJ_G0006016.1 mouse_genomes_project 3 35515867 35522112 + Gm42921 lincRNA lincRNA MGP_CASTEiJ_T0010237.1 MGP_CASTEiJ_G0008425.1 mouse_genomes_project 3 87956604 87956712 - Gm25641 miRNA miRNA MGP_CASTEiJ_T0001226.1 MGP_CASTEiJ_G0001157.1 mouse_genomes_project 3 104617641 104620627 - TEC TEC MGP_CASTEiJ_T0060273.1 MGP_CASTEiJ_G0026295.1 mouse_genomes_project 3 28296374 28324932 + MGP_CASTEiJ_P0060273 Sec62 protein_coding protein_coding MGP_CASTEiJ_T0060274.1 MGP_CASTEiJ_G0026295.1 mouse_genomes_project 3 28296835 28305071 + Sec62 protein_coding retained_intron MGP_CASTEiJ_T0060275.1 MGP_CASTEiJ_G0026295.1 mouse_genomes_project 3 28322506 28323688 + Sec62 protein_coding processed_transcript MGP_CASTEiJ_T0062348.1 MGP_CASTEiJ_G0026737.1 mouse_genomes_project 3 94794601 94821738 - Setdb1 protein_coding retained_intron MGP_CASTEiJ_T0062349.1 MGP_CASTEiJ_G0026737.1 mouse_genomes_project 3 94794601 94827087 - MGP_CASTEiJ_P0062349 Setdb1 protein_coding protein_coding MGP_CASTEiJ_T0062350.1 MGP_CASTEiJ_G0026737.1 mouse_genomes_project 3 94794601 94827085 - MGP_CASTEiJ_P0062350 Setdb1 protein_coding protein_coding MGP_CASTEiJ_T0062351.1 MGP_CASTEiJ_G0026737.1 mouse_genomes_project 3 94794601 94821738 - MGP_CASTEiJ_P0062351 Setdb1 protein_coding protein_coding MGP_CASTEiJ_T0013822.1 MGP_CASTEiJ_G0011985.1 mouse_genomes_project 3 117854356 117854999 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062076.1 MGP_CASTEiJ_G0026662.1 mouse_genomes_project 3 91773642 91773873 - MGP_CASTEiJ_P0062076 Sprr4 protein_coding protein_coding MGP_CASTEiJ_T0007473.1 MGP_CASTEiJ_G0006128.1 mouse_genomes_project 3 108602448 108615520 + Gm42754 lincRNA lincRNA MGP_CASTEiJ_T0061972.1 MGP_CASTEiJ_G0026622.1 mouse_genomes_project 3 90275557 90351597 + MGP_CASTEiJ_P0061972 Gatad2b protein_coding protein_coding MGP_CASTEiJ_T0061973.1 MGP_CASTEiJ_G0026622.1 mouse_genomes_project 3 90275563 90340665 + Gatad2b protein_coding retained_intron MGP_CASTEiJ_T0061974.1 MGP_CASTEiJ_G0026622.1 mouse_genomes_project 3 90275660 90346292 + Gatad2b protein_coding retained_intron MGP_CASTEiJ_T0061975.1 MGP_CASTEiJ_G0026622.1 mouse_genomes_project 3 90276379 90346547 + MGP_CASTEiJ_P0061975 Gatad2b protein_coding protein_coding MGP_CASTEiJ_T0061976.1 MGP_CASTEiJ_G0026622.1 mouse_genomes_project 3 90324763 90327130 + Gatad2b protein_coding retained_intron MGP_CASTEiJ_T0061977.1 MGP_CASTEiJ_G0026622.1 mouse_genomes_project 3 90325391 90346299 + MGP_CASTEiJ_P0061977 Gatad2b protein_coding protein_coding MGP_CASTEiJ_T0061978.1 MGP_CASTEiJ_G0026622.1 mouse_genomes_project 3 90325393 90346258 + MGP_CASTEiJ_P0061978 Gatad2b protein_coding protein_coding MGP_CASTEiJ_T0061979.1 MGP_CASTEiJ_G0026622.1 mouse_genomes_project 3 90339527 90344282 + MGP_CASTEiJ_P0061979 Gatad2b protein_coding protein_coding MGP_CASTEiJ_T0100982.1 MGP_CASTEiJ_G0037895.1 mouse_genomes_project 3 98797300 98797429 - Gm22341 snoRNA snoRNA MGP_CASTEiJ_T0013619.1 MGP_CASTEiJ_G0011782.1 mouse_genomes_project 3 55760375 55760628 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060298.1 MGP_CASTEiJ_G0026299.1 mouse_genomes_project 3 28617836 28646651 + MGP_CASTEiJ_P0060298 Skil protein_coding unknown_likely_coding MGP_CASTEiJ_T0060299.1 MGP_CASTEiJ_G0026299.1 mouse_genomes_project 3 28618072 28646644 + MGP_CASTEiJ_P0060299 Skil protein_coding protein_coding MGP_CASTEiJ_T0060300.1 MGP_CASTEiJ_G0026299.1 mouse_genomes_project 3 28618075 28624396 + Skil protein_coding retained_intron MGP_CASTEiJ_T0060301.1 MGP_CASTEiJ_G0026299.1 mouse_genomes_project 3 28618075 28646648 + MGP_CASTEiJ_P0060301 Skil protein_coding protein_coding MGP_CASTEiJ_T0060302.1 MGP_CASTEiJ_G0026299.1 mouse_genomes_project 3 28618079 28620898 + MGP_CASTEiJ_P0060302 Skil protein_coding protein_coding MGP_CASTEiJ_T0060303.1 MGP_CASTEiJ_G0026299.1 mouse_genomes_project 3 28618139 28642781 + MGP_CASTEiJ_P0060303 Skil protein_coding protein_coding MGP_CASTEiJ_T0060304.1 MGP_CASTEiJ_G0026299.1 mouse_genomes_project 3 28619838 28642492 + MGP_CASTEiJ_P0060304 Skil protein_coding protein_coding MGP_CASTEiJ_T0013880.1 MGP_CASTEiJ_G0012043.1 mouse_genomes_project 3 138043294 138043453 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063183.1 MGP_CASTEiJ_G0026941.1 mouse_genomes_project 3 109064860 109091922 + MGP_CASTEiJ_P0063183 Clcc1 protein_coding protein_coding MGP_CASTEiJ_T0063184.1 MGP_CASTEiJ_G0026941.1 mouse_genomes_project 3 109064896 109076135 + Clcc1 protein_coding processed_transcript MGP_CASTEiJ_T0063185.1 MGP_CASTEiJ_G0026941.1 mouse_genomes_project 3 109064904 109081209 + Clcc1 protein_coding processed_transcript MGP_CASTEiJ_T0063186.1 MGP_CASTEiJ_G0026941.1 mouse_genomes_project 3 109064905 109091918 + MGP_CASTEiJ_P0063186 Clcc1 protein_coding protein_coding MGP_CASTEiJ_T0063187.1 MGP_CASTEiJ_G0026941.1 mouse_genomes_project 3 109064905 109076684 + MGP_CASTEiJ_P0063187 Clcc1 protein_coding protein_coding MGP_CASTEiJ_T0063188.1 MGP_CASTEiJ_G0026941.1 mouse_genomes_project 3 109064937 109091096 + MGP_CASTEiJ_P0063188 Clcc1 protein_coding protein_coding MGP_CASTEiJ_T0063189.1 MGP_CASTEiJ_G0026941.1 mouse_genomes_project 3 109076327 109081912 + Clcc1 protein_coding processed_transcript MGP_CASTEiJ_T0063190.1 MGP_CASTEiJ_G0026941.1 mouse_genomes_project 3 109080982 109081918 + Clcc1 protein_coding retained_intron MGP_CASTEiJ_T0011223.1 MGP_CASTEiJ_G0009411.1 mouse_genomes_project 3 157936444 157936555 + Gm26456 misc_RNA misc_RNA MGP_CASTEiJ_T0060724.1 MGP_CASTEiJ_G0026373.1 mouse_genomes_project 3 51820797 51838661 - MGP_CASTEiJ_P0060724 Nhlrc3 protein_coding protein_coding MGP_CASTEiJ_T0060725.1 MGP_CASTEiJ_G0026373.1 mouse_genomes_project 3 51820802 51838652 - MGP_CASTEiJ_P0060725 Nhlrc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060726.1 MGP_CASTEiJ_G0026373.1 mouse_genomes_project 3 51833700 51837315 - Nhlrc3 protein_coding retained_intron MGP_CASTEiJ_T0060727.1 MGP_CASTEiJ_G0026373.1 mouse_genomes_project 3 51834205 51838580 - Nhlrc3 protein_coding retained_intron MGP_CASTEiJ_T0060728.1 MGP_CASTEiJ_G0026373.1 mouse_genomes_project 3 51837396 51838626 - Nhlrc3 protein_coding retained_intron MGP_CASTEiJ_T0063039.1 MGP_CASTEiJ_G0026907.1 mouse_genomes_project 3 107805496 107856582 - MGP_CASTEiJ_P0063039 Slc6a17 protein_coding protein_coding MGP_CASTEiJ_T0063040.1 MGP_CASTEiJ_G0026907.1 mouse_genomes_project 3 107805501 107856582 - MGP_CASTEiJ_P0063040 Slc6a17 protein_coding protein_coding MGP_CASTEiJ_T0063041.1 MGP_CASTEiJ_G0026907.1 mouse_genomes_project 3 107805502 107837039 - MGP_CASTEiJ_P0063041 Slc6a17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063042.1 MGP_CASTEiJ_G0026907.1 mouse_genomes_project 3 107805504 107806660 - Slc6a17 protein_coding processed_transcript MGP_CASTEiJ_T0063043.1 MGP_CASTEiJ_G0026907.1 mouse_genomes_project 3 107818456 107856313 - Slc6a17 protein_coding processed_transcript MGP_CASTEiJ_T0063044.1 MGP_CASTEiJ_G0026907.1 mouse_genomes_project 3 107826172 107829643 - Slc6a17 protein_coding processed_transcript MGP_CASTEiJ_T0063045.1 MGP_CASTEiJ_G0026907.1 mouse_genomes_project 3 107826174 107856582 - Slc6a17 protein_coding retained_intron MGP_CASTEiJ_T0063046.1 MGP_CASTEiJ_G0026907.1 mouse_genomes_project 3 107832162 107856509 - Slc6a17 protein_coding processed_transcript MGP_CASTEiJ_T0063047.1 MGP_CASTEiJ_G0026907.1 mouse_genomes_project 3 107832208 107855897 - MGP_CASTEiJ_P0063047 Slc6a17 protein_coding protein_coding MGP_CASTEiJ_T0063048.1 MGP_CASTEiJ_G0026907.1 mouse_genomes_project 3 107837179 107855887 - Slc6a17 protein_coding processed_transcript MGP_CASTEiJ_T0007403.1 MGP_CASTEiJ_G0006076.1 mouse_genomes_project 3 82596506 82600478 - Gm10710 lincRNA lincRNA MGP_CASTEiJ_T0004266.1 MGP_CASTEiJ_G0003729.1 mouse_genomes_project 3 143408333 143415724 - Gm15688 antisense antisense MGP_CASTEiJ_T0062364.1 MGP_CASTEiJ_G0026740.1 mouse_genomes_project 3 95002875 95035826 + MGP_CASTEiJ_P0062364 Ctss protein_coding protein_coding MGP_CASTEiJ_T0062365.1 MGP_CASTEiJ_G0026740.1 mouse_genomes_project 3 95002983 95035832 + MGP_CASTEiJ_P0062365 Ctss protein_coding protein_coding MGP_CASTEiJ_T0001068.1 MGP_CASTEiJ_G0001001.1 mouse_genomes_project 3 10730071 10734887 + TEC TEC MGP_CASTEiJ_T0013904.1 MGP_CASTEiJ_G0012067.1 mouse_genomes_project 3 146937023 146938695 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007566.1 MGP_CASTEiJ_G0006206.1 mouse_genomes_project 3 148358912 148360844 + Gm43861 lincRNA lincRNA MGP_CASTEiJ_T0062389.1 MGP_CASTEiJ_G0026746.1 mouse_genomes_project 3 95230449 95235971 - MGP_CASTEiJ_P0062389 Ecm1 protein_coding protein_coding MGP_CASTEiJ_T0062390.1 MGP_CASTEiJ_G0026746.1 mouse_genomes_project 3 95230450 95235969 - MGP_CASTEiJ_P0062390 Ecm1 protein_coding protein_coding MGP_CASTEiJ_T0062391.1 MGP_CASTEiJ_G0026746.1 mouse_genomes_project 3 95230451 95231321 - Ecm1 protein_coding retained_intron MGP_CASTEiJ_T0062392.1 MGP_CASTEiJ_G0026746.1 mouse_genomes_project 3 95232439 95235951 - MGP_CASTEiJ_P0062392 Ecm1 protein_coding protein_coding MGP_CASTEiJ_T0062393.1 MGP_CASTEiJ_G0026746.1 mouse_genomes_project 3 95232451 95235969 - MGP_CASTEiJ_P0062393 Ecm1 protein_coding protein_coding MGP_CASTEiJ_T0062394.1 MGP_CASTEiJ_G0026746.1 mouse_genomes_project 3 95232512 95235971 - MGP_CASTEiJ_P0062394 Ecm1 protein_coding protein_coding MGP_CASTEiJ_T0062395.1 MGP_CASTEiJ_G0026746.1 mouse_genomes_project 3 95232904 95235946 - MGP_CASTEiJ_P0062395 Ecm1 protein_coding protein_coding MGP_CASTEiJ_T0062396.1 MGP_CASTEiJ_G0026746.1 mouse_genomes_project 3 95233065 95235951 - MGP_CASTEiJ_P0062396 Ecm1 protein_coding protein_coding MGP_CASTEiJ_T0062397.1 MGP_CASTEiJ_G0026746.1 mouse_genomes_project 3 95233651 95234625 - Ecm1 protein_coding retained_intron MGP_CASTEiJ_T0062398.1 MGP_CASTEiJ_G0026746.1 mouse_genomes_project 3 95234185 95235971 - MGP_CASTEiJ_P0062398 Ecm1 protein_coding protein_coding MGP_CASTEiJ_T0061142.1 MGP_CASTEiJ_G0026466.1 mouse_genomes_project 3 72629623 72715508 - MGP_CASTEiJ_P0061142 Bche protein_coding protein_coding MGP_CASTEiJ_T0061143.1 MGP_CASTEiJ_G0026466.1 mouse_genomes_project 3 72643769 72715335 - Bche protein_coding retained_intron MGP_CASTEiJ_T0061144.1 MGP_CASTEiJ_G0026466.1 mouse_genomes_project 3 72705695 72715360 - MGP_CASTEiJ_P0061144 Bche protein_coding protein_coding MGP_CASTEiJ_T0061145.1 MGP_CASTEiJ_G0026466.1 mouse_genomes_project 3 72708180 72715360 - Bche protein_coding processed_transcript MGP_CASTEiJ_T0063280.1 MGP_CASTEiJ_G0026959.1 mouse_genomes_project 3 115396244 115625104 + MGP_CASTEiJ_P0063280 Olfm3 protein_coding protein_coding MGP_CASTEiJ_T0063281.1 MGP_CASTEiJ_G0026959.1 mouse_genomes_project 3 115396802 115619919 + MGP_CASTEiJ_P0063281 Olfm3 protein_coding protein_coding MGP_CASTEiJ_T0063282.1 MGP_CASTEiJ_G0026959.1 mouse_genomes_project 3 115578704 115624639 + MGP_CASTEiJ_P0063282 Olfm3 protein_coding protein_coding MGP_CASTEiJ_T0013832.1 MGP_CASTEiJ_G0011995.1 mouse_genomes_project 3 123090890 123091303 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001216.1 MGP_CASTEiJ_G0001147.1 mouse_genomes_project 3 95831211 95832825 + TEC TEC MGP_CASTEiJ_T0098874.1 MGP_CASTEiJ_G0035799.1 mouse_genomes_project 3 22932065 22938468 - Gm37573 sense_intronic sense_intronic MGP_CASTEiJ_T0007508.1 MGP_CASTEiJ_G0006155.1 mouse_genomes_project 3 130446741 130449483 - Gm28543 lincRNA lincRNA MGP_CASTEiJ_T0099685.1 MGP_CASTEiJ_G0036598.1 mouse_genomes_project 3 30575304 30575461 + Gm23214 snRNA snRNA MGP_CASTEiJ_T0001304.1 MGP_CASTEiJ_G0001234.1 mouse_genomes_project 3 134362677 134365893 + TEC TEC MGP_CASTEiJ_T0010276.1 MGP_CASTEiJ_G0008464.1 mouse_genomes_project 3 160460387 160460458 + Mir186 miRNA miRNA MGP_CASTEiJ_T0062522.1 MGP_CASTEiJ_G0026783.1 mouse_genomes_project 3 96181813 96185677 + MGP_CASTEiJ_P0062522 Rbm8a protein_coding protein_coding MGP_CASTEiJ_T0062523.1 MGP_CASTEiJ_G0026783.1 mouse_genomes_project 3 96181820 96185677 + MGP_CASTEiJ_P0062523 Rbm8a protein_coding protein_coding MGP_CASTEiJ_T0062524.1 MGP_CASTEiJ_G0026783.1 mouse_genomes_project 3 96181842 96185473 + MGP_CASTEiJ_P0062524 Rbm8a protein_coding protein_coding MGP_CASTEiJ_T0062525.1 MGP_CASTEiJ_G0026783.1 mouse_genomes_project 3 96181853 96182435 + Rbm8a protein_coding retained_intron MGP_CASTEiJ_T0062526.1 MGP_CASTEiJ_G0026783.1 mouse_genomes_project 3 96183102 96183782 + Rbm8a protein_coding retained_intron MGP_CASTEiJ_T0013520.1 MGP_CASTEiJ_G0011683.1 mouse_genomes_project 3 16547098 16547341 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013872.1 MGP_CASTEiJ_G0012035.1 mouse_genomes_project 3 136782101 136782777 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063933.1 MGP_CASTEiJ_G0027075.1 mouse_genomes_project 3 139670682 139680837 + MGP_CASTEiJ_P0063933 protein_coding protein_coding MGP_CASTEiJ_T0062038.1 MGP_CASTEiJ_G0026636.1 mouse_genomes_project 3 90625396 90627718 + MGP_CASTEiJ_P0062038 S100a4 protein_coding protein_coding MGP_CASTEiJ_T0062039.1 MGP_CASTEiJ_G0026636.1 mouse_genomes_project 3 90626583 90627506 + MGP_CASTEiJ_P0062039 S100a4 protein_coding protein_coding MGP_CASTEiJ_T0060585.1 MGP_CASTEiJ_G0026351.1 mouse_genomes_project 3 38650047 38692654 + MGP_CASTEiJ_P0060585 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060586.1 MGP_CASTEiJ_G0026351.1 mouse_genomes_project 3 38650047 38690711 + MGP_CASTEiJ_P0060586 protein_coding protein_coding MGP_CASTEiJ_T0060587.1 MGP_CASTEiJ_G0026351.1 mouse_genomes_project 3 38650047 38692656 + MGP_CASTEiJ_P0060587 protein_coding protein_coding MGP_CASTEiJ_T0060588.1 MGP_CASTEiJ_G0026351.1 mouse_genomes_project 3 38650047 38691541 + MGP_CASTEiJ_P0060588 protein_coding protein_coding MGP_CASTEiJ_T0060589.1 MGP_CASTEiJ_G0026351.1 mouse_genomes_project 3 38650047 38691558 + MGP_CASTEiJ_P0060589 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060590.1 MGP_CASTEiJ_G0026351.1 mouse_genomes_project 3 38684880 38691099 + protein_coding processed_transcript MGP_CASTEiJ_T0099765.1 MGP_CASTEiJ_G0036678.1 mouse_genomes_project 3 160277419 160277526 + Gm22458 snRNA snRNA MGP_CASTEiJ_T0101597.1 MGP_CASTEiJ_G0038460.1 mouse_genomes_project 3 130209693 130210379 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0013781.1 MGP_CASTEiJ_G0011944.1 mouse_genomes_project 3 104366252 104366970 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0063085.1 MGP_CASTEiJ_G0026917.1 mouse_genomes_project 3 108295358 108300151 - MGP_CASTEiJ_P0063085 Gstm6 protein_coding protein_coding MGP_CASTEiJ_T0063086.1 MGP_CASTEiJ_G0026917.1 mouse_genomes_project 3 108295365 108301484 - MGP_CASTEiJ_P0063086 Gstm6 protein_coding protein_coding MGP_CASTEiJ_T0063087.1 MGP_CASTEiJ_G0026917.1 mouse_genomes_project 3 108295366 108301469 - MGP_CASTEiJ_P0063087 Gstm6 protein_coding protein_coding MGP_CASTEiJ_T0063088.1 MGP_CASTEiJ_G0026917.1 mouse_genomes_project 3 108295624 108299902 - MGP_CASTEiJ_P0063088 Gstm6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063089.1 MGP_CASTEiJ_G0026917.1 mouse_genomes_project 3 108298336 108301450 - Gstm6 protein_coding processed_transcript MGP_CASTEiJ_T0010212.1 MGP_CASTEiJ_G0008400.1 mouse_genomes_project 3 15031107 15031216 + Mir124a-2 miRNA miRNA MGP_CASTEiJ_T0098895.1 MGP_CASTEiJ_G0035819.1 mouse_genomes_project 3 101358535 101359287 - Gm42937 sense_intronic sense_intronic MGP_CASTEiJ_T0001197.1 MGP_CASTEiJ_G0001128.1 mouse_genomes_project 3 76897873 76899385 - TEC TEC MGP_CASTEiJ_T0001313.1 MGP_CASTEiJ_G0001243.1 mouse_genomes_project 3 138412907 138414172 + TEC TEC MGP_CASTEiJ_T0099695.1 MGP_CASTEiJ_G0036608.1 mouse_genomes_project 3 53800894 53801001 + Gm25132 snRNA snRNA MGP_CASTEiJ_T0013882.1 MGP_CASTEiJ_G0012045.1 mouse_genomes_project 3 139376960 139377684 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099726.1 MGP_CASTEiJ_G0036639.1 mouse_genomes_project 3 92257307 92257410 - Gm22577 snRNA snRNA MGP_CASTEiJ_T0061695.1 MGP_CASTEiJ_G0026578.1 mouse_genomes_project 3 89026750 89040732 - MGP_CASTEiJ_P0061695 Hcn3 protein_coding protein_coding MGP_CASTEiJ_T0061696.1 MGP_CASTEiJ_G0026578.1 mouse_genomes_project 3 89029439 89031941 - Hcn3 protein_coding retained_intron MGP_CASTEiJ_T0061697.1 MGP_CASTEiJ_G0026578.1 mouse_genomes_project 3 89029556 89031923 - Hcn3 protein_coding retained_intron MGP_CASTEiJ_T0061698.1 MGP_CASTEiJ_G0026578.1 mouse_genomes_project 3 89032189 89040516 - Hcn3 protein_coding processed_transcript MGP_CASTEiJ_T0013593.1 MGP_CASTEiJ_G0011756.1 mouse_genomes_project 3 44394322 44395041 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060186.1 MGP_CASTEiJ_G0026282.1 mouse_genomes_project 3 25307970 25511761 + MGP_CASTEiJ_P0060186 Pld1 protein_coding protein_coding MGP_CASTEiJ_T0060187.1 MGP_CASTEiJ_G0026282.1 mouse_genomes_project 3 25321528 25330552 + Pld1 protein_coding processed_transcript MGP_CASTEiJ_T0060188.1 MGP_CASTEiJ_G0026282.1 mouse_genomes_project 3 25321529 25406711 + MGP_CASTEiJ_P0060188 Pld1 protein_coding protein_coding MGP_CASTEiJ_T0060189.1 MGP_CASTEiJ_G0026282.1 mouse_genomes_project 3 25359673 25511756 + MGP_CASTEiJ_P0060189 Pld1 protein_coding protein_coding MGP_CASTEiJ_T0060190.1 MGP_CASTEiJ_G0026282.1 mouse_genomes_project 3 25359675 25510575 + MGP_CASTEiJ_P0060190 Pld1 protein_coding protein_coding MGP_CASTEiJ_T0060191.1 MGP_CASTEiJ_G0026282.1 mouse_genomes_project 3 25409286 25511884 + MGP_CASTEiJ_P0060191 Pld1 protein_coding protein_coding MGP_CASTEiJ_T0060192.1 MGP_CASTEiJ_G0026282.1 mouse_genomes_project 3 25419245 25426103 + Pld1 protein_coding processed_transcript MGP_CASTEiJ_T0060193.1 MGP_CASTEiJ_G0026282.1 mouse_genomes_project 3 25443199 25459871 + Pld1 protein_coding retained_intron MGP_CASTEiJ_T0060194.1 MGP_CASTEiJ_G0026282.1 mouse_genomes_project 3 25444479 25545121 + MGP_CASTEiJ_P0060194 Pld1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0060195.1 MGP_CASTEiJ_G0026282.1 mouse_genomes_project 3 25452373 25455688 + Pld1 protein_coding retained_intron MGP_CASTEiJ_T0060196.1 MGP_CASTEiJ_G0026282.1 mouse_genomes_project 3 25484186 25508934 + MGP_CASTEiJ_P0060196 Pld1 protein_coding protein_coding MGP_CASTEiJ_T0061682.1 MGP_CASTEiJ_G0026576.1 mouse_genomes_project 3 88963880 88972951 - MGP_CASTEiJ_P0061682 Fdps protein_coding unknown_likely_coding MGP_CASTEiJ_T0061683.1 MGP_CASTEiJ_G0026576.1 mouse_genomes_project 3 88963889 88974102 - MGP_CASTEiJ_P0061683 Fdps protein_coding protein_coding MGP_CASTEiJ_T0061684.1 MGP_CASTEiJ_G0026576.1 mouse_genomes_project 3 88963889 88974031 - MGP_CASTEiJ_P0061684 Fdps protein_coding protein_coding MGP_CASTEiJ_T0061685.1 MGP_CASTEiJ_G0026576.1 mouse_genomes_project 3 88964050 88967823 - MGP_CASTEiJ_P0061685 Fdps protein_coding protein_coding MGP_CASTEiJ_T0061686.1 MGP_CASTEiJ_G0026576.1 mouse_genomes_project 3 88967195 88968127 - Fdps protein_coding retained_intron MGP_CASTEiJ_T0061687.1 MGP_CASTEiJ_G0026576.1 mouse_genomes_project 3 88967507 88973458 - MGP_CASTEiJ_P0061687 Fdps protein_coding protein_coding MGP_CASTEiJ_T0061688.1 MGP_CASTEiJ_G0026576.1 mouse_genomes_project 3 88967742 88973995 - MGP_CASTEiJ_P0061688 Fdps protein_coding protein_coding MGP_CASTEiJ_T0061689.1 MGP_CASTEiJ_G0026576.1 mouse_genomes_project 3 88971082 88974034 - Fdps protein_coding retained_intron MGP_CASTEiJ_T0013676.1 MGP_CASTEiJ_G0011839.1 mouse_genomes_project 3 70837810 70838762 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013692.1 MGP_CASTEiJ_G0011855.1 mouse_genomes_project 3 77207981 77209557 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017217.1 MGP_CASTEiJ_G0014823.1 mouse_genomes_project 3 87939719 87942590 + AW047730 processed_transcript processed_transcript MGP_CASTEiJ_T0017218.1 MGP_CASTEiJ_G0014823.1 mouse_genomes_project 3 87939731 87942590 + AW047730 processed_transcript processed_transcript MGP_CASTEiJ_T0001131.1 MGP_CASTEiJ_G0001064.1 mouse_genomes_project 3 48939530 48943235 - TEC TEC MGP_CASTEiJ_T0062640.1 MGP_CASTEiJ_G0026809.1 mouse_genomes_project 3 97968971 97996968 + MGP_CASTEiJ_P0062640 Hmgcs2 protein_coding protein_coding MGP_CASTEiJ_T0062641.1 MGP_CASTEiJ_G0026809.1 mouse_genomes_project 3 97968971 97996974 + MGP_CASTEiJ_P0062641 Hmgcs2 protein_coding protein_coding MGP_CASTEiJ_T0001299.1 MGP_CASTEiJ_G0001229.1 mouse_genomes_project 3 132435513 132436894 + TEC TEC MGP_CASTEiJ_T0102298.1 MGP_CASTEiJ_G0039023.1 mouse_genomes_project 3 113812237 113845058 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0001174.1 MGP_CASTEiJ_G0001105.1 mouse_genomes_project 3 57108940 57111010 + TEC TEC MGP_CASTEiJ_T0017266.1 MGP_CASTEiJ_G0014841.1 mouse_genomes_project 3 129395999 129510797 - D030025E07Rik processed_transcript lincRNA MGP_CASTEiJ_T0017267.1 MGP_CASTEiJ_G0014841.1 mouse_genomes_project 3 129403779 129413817 - D030025E07Rik processed_transcript lincRNA MGP_CASTEiJ_T0017268.1 MGP_CASTEiJ_G0014841.1 mouse_genomes_project 3 129404157 129510800 - D030025E07Rik processed_transcript retained_intron MGP_CASTEiJ_T0017269.1 MGP_CASTEiJ_G0014841.1 mouse_genomes_project 3 129422348 129510747 - D030025E07Rik processed_transcript retained_intron MGP_CASTEiJ_T0017270.1 MGP_CASTEiJ_G0014841.1 mouse_genomes_project 3 129473093 129510786 - D030025E07Rik processed_transcript lincRNA MGP_CASTEiJ_T0001203.1 MGP_CASTEiJ_G0001134.1 mouse_genomes_project 3 84432372 84436256 + TEC TEC MGP_CASTEiJ_T0063724.1 MGP_CASTEiJ_G0027038.1 mouse_genomes_project 3 132140235 132157591 + MGP_CASTEiJ_P0063724 Etnppl protein_coding protein_coding MGP_CASTEiJ_T0063725.1 MGP_CASTEiJ_G0027038.1 mouse_genomes_project 3 132140356 132160306 + MGP_CASTEiJ_P0063725 Etnppl protein_coding protein_coding MGP_CASTEiJ_T0063726.1 MGP_CASTEiJ_G0027038.1 mouse_genomes_project 3 132140359 132144414 + Etnppl protein_coding retained_intron MGP_CASTEiJ_T0063727.1 MGP_CASTEiJ_G0027038.1 mouse_genomes_project 3 132140386 132144433 + Etnppl protein_coding retained_intron MGP_CASTEiJ_T0063728.1 MGP_CASTEiJ_G0027038.1 mouse_genomes_project 3 132140480 132157465 + MGP_CASTEiJ_P0063728 Etnppl protein_coding protein_coding MGP_CASTEiJ_T0063729.1 MGP_CASTEiJ_G0027038.1 mouse_genomes_project 3 132149296 132152508 + MGP_CASTEiJ_P0063729 Etnppl protein_coding protein_coding MGP_CASTEiJ_T0064157.1 MGP_CASTEiJ_G0027121.1 mouse_genomes_project 3 148431120 148438329 + MGP_CASTEiJ_P0064157 Mcoln3 protein_coding protein_coding MGP_CASTEiJ_T0064158.1 MGP_CASTEiJ_G0027121.1 mouse_genomes_project 3 148435359 148455178 + MGP_CASTEiJ_P0064158 Mcoln3 protein_coding protein_coding MGP_CASTEiJ_T0064159.1 MGP_CASTEiJ_G0027121.1 mouse_genomes_project 3 148452453 148454036 + Mcoln3 protein_coding retained_intron MGP_CASTEiJ_T0013738.1 MGP_CASTEiJ_G0011901.1 mouse_genomes_project 3 92846174 92847553 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013607.1 MGP_CASTEiJ_G0011770.1 mouse_genomes_project 3 49664565 49664867 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060870.1 MGP_CASTEiJ_G0026401.1 mouse_genomes_project 3 56400913 56407102 - MGP_CASTEiJ_P0060870 Pfn2 protein_coding protein_coding MGP_CASTEiJ_T0060871.1 MGP_CASTEiJ_G0026401.1 mouse_genomes_project 3 56400923 56406171 - MGP_CASTEiJ_P0060871 Pfn2 protein_coding protein_coding MGP_CASTEiJ_T0060872.1 MGP_CASTEiJ_G0026401.1 mouse_genomes_project 3 56402126 56404905 - MGP_CASTEiJ_P0060872 Pfn2 protein_coding protein_coding MGP_CASTEiJ_T0060873.1 MGP_CASTEiJ_G0026401.1 mouse_genomes_project 3 56403680 56406572 - MGP_CASTEiJ_P0060873 Pfn2 protein_coding protein_coding MGP_CASTEiJ_T0099754.1 MGP_CASTEiJ_G0036667.1 mouse_genomes_project 3 138807253 138807360 + Gm26107 snRNA snRNA MGP_CASTEiJ_T0061505.1 MGP_CASTEiJ_G0026549.1 mouse_genomes_project 3 88024049 88039874 - MGP_CASTEiJ_P0061505 Tsacc protein_coding protein_coding MGP_CASTEiJ_T0061506.1 MGP_CASTEiJ_G0026549.1 mouse_genomes_project 3 88024052 88039713 - MGP_CASTEiJ_P0061506 Tsacc protein_coding protein_coding MGP_CASTEiJ_T0013509.1 MGP_CASTEiJ_G0011672.1 mouse_genomes_project 3 13198834 13205468 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098881.1 MGP_CASTEiJ_G0035805.1 mouse_genomes_project 3 93961727 93963882 - Gm43773 sense_intronic sense_intronic MGP_CASTEiJ_T0004078.1 MGP_CASTEiJ_G0003602.1 mouse_genomes_project 3 26091531 26173293 - antisense antisense MGP_CASTEiJ_T0064359.1 MGP_CASTEiJ_G0027152.1 mouse_genomes_project 3 156619325 156676195 - MGP_CASTEiJ_P0064359 Msh4 protein_coding protein_coding MGP_CASTEiJ_T0064360.1 MGP_CASTEiJ_G0027152.1 mouse_genomes_project 3 156619448 156627958 - Msh4 protein_coding retained_intron MGP_CASTEiJ_T0064361.1 MGP_CASTEiJ_G0027152.1 mouse_genomes_project 3 156619448 156644053 - Msh4 protein_coding retained_intron MGP_CASTEiJ_T0064362.1 MGP_CASTEiJ_G0027152.1 mouse_genomes_project 3 156619448 156627932 - Msh4 protein_coding processed_transcript MGP_CASTEiJ_T0064363.1 MGP_CASTEiJ_G0027152.1 mouse_genomes_project 3 156619448 156644053 - Msh4 protein_coding retained_intron MGP_CASTEiJ_T0064364.1 MGP_CASTEiJ_G0027152.1 mouse_genomes_project 3 156619448 156638171 - Msh4 protein_coding retained_intron MGP_CASTEiJ_T0064365.1 MGP_CASTEiJ_G0027152.1 mouse_genomes_project 3 156619448 156674818 - MGP_CASTEiJ_P0064365 Msh4 protein_coding protein_coding MGP_CASTEiJ_T0064366.1 MGP_CASTEiJ_G0027152.1 mouse_genomes_project 3 156619452 156674978 - MGP_CASTEiJ_P0064366 Msh4 protein_coding protein_coding MGP_CASTEiJ_T0063207.1 MGP_CASTEiJ_G0026945.1 mouse_genomes_project 3 109275427 109314760 - MGP_CASTEiJ_P0063207 Fndc7 protein_coding protein_coding MGP_CASTEiJ_T0063208.1 MGP_CASTEiJ_G0026945.1 mouse_genomes_project 3 109275432 109282155 - Fndc7 protein_coding processed_transcript MGP_CASTEiJ_T0063209.1 MGP_CASTEiJ_G0026945.1 mouse_genomes_project 3 109278884 109315076 - MGP_CASTEiJ_P0063209 Fndc7 protein_coding protein_coding MGP_CASTEiJ_T0063210.1 MGP_CASTEiJ_G0026945.1 mouse_genomes_project 3 109278901 109314869 - MGP_CASTEiJ_P0063210 Fndc7 protein_coding protein_coding MGP_CASTEiJ_T0063211.1 MGP_CASTEiJ_G0026945.1 mouse_genomes_project 3 109279650 109282151 - Fndc7 protein_coding processed_transcript MGP_CASTEiJ_T0063212.1 MGP_CASTEiJ_G0026945.1 mouse_genomes_project 3 109286420 109294061 - Fndc7 protein_coding processed_transcript MGP_CASTEiJ_T0063213.1 MGP_CASTEiJ_G0026945.1 mouse_genomes_project 3 109292800 109305223 - Fndc7 protein_coding retained_intron MGP_CASTEiJ_T0013805.1 MGP_CASTEiJ_G0011968.1 mouse_genomes_project 3 113178394 113178787 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001075.1 MGP_CASTEiJ_G0001008.1 mouse_genomes_project 3 24878529 24879746 + TEC TEC MGP_CASTEiJ_T0064037.1 MGP_CASTEiJ_G0027096.1 mouse_genomes_project 3 144541819 144559815 + MGP_CASTEiJ_P0064037 Gbp7 protein_coding protein_coding MGP_CASTEiJ_T0064038.1 MGP_CASTEiJ_G0027096.1 mouse_genomes_project 3 144541819 144562939 + MGP_CASTEiJ_P0064038 Gbp7 protein_coding protein_coding MGP_CASTEiJ_T0060513.1 MGP_CASTEiJ_G0026336.1 mouse_genomes_project 3 35026117 35030817 - MGP_CASTEiJ_P0060513 Cetn4 protein_coding protein_coding MGP_CASTEiJ_T0060514.1 MGP_CASTEiJ_G0026336.1 mouse_genomes_project 3 35027125 35030791 - MGP_CASTEiJ_P0060514 Cetn4 protein_coding protein_coding MGP_CASTEiJ_T0060515.1 MGP_CASTEiJ_G0026336.1 mouse_genomes_project 3 35027457 35030730 - MGP_CASTEiJ_P0060515 Cetn4 protein_coding protein_coding MGP_CASTEiJ_T0001243.1 MGP_CASTEiJ_G0001174.1 mouse_genomes_project 3 119264630 119268784 + TEC TEC MGP_CASTEiJ_T0013560.1 MGP_CASTEiJ_G0011723.1 mouse_genomes_project 3 34064191 34064689 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007388.1 MGP_CASTEiJ_G0006064.1 mouse_genomes_project 3 74833090 74867985 + lincRNA lincRNA MGP_CASTEiJ_T0001110.1 MGP_CASTEiJ_G0001043.1 mouse_genomes_project 3 35598571 35599682 + TEC TEC MGP_CASTEiJ_T0062908.1 MGP_CASTEiJ_G0026870.1 mouse_genomes_project 3 104787562 104830782 - MGP_CASTEiJ_P0062908 Capza1 protein_coding protein_coding MGP_CASTEiJ_T0062909.1 MGP_CASTEiJ_G0026870.1 mouse_genomes_project 3 104800216 104830677 - MGP_CASTEiJ_P0062909 Capza1 protein_coding protein_coding MGP_CASTEiJ_T0062910.1 MGP_CASTEiJ_G0026870.1 mouse_genomes_project 3 104805915 104808809 - Capza1 protein_coding retained_intron MGP_CASTEiJ_T0062911.1 MGP_CASTEiJ_G0026870.1 mouse_genomes_project 3 104808170 104830650 - Capza1 protein_coding retained_intron MGP_CASTEiJ_T0060630.1 MGP_CASTEiJ_G0026356.1 mouse_genomes_project 3 39528654 39542385 + MGP_CASTEiJ_P0060630 D3Ertd751e protein_coding protein_coding MGP_CASTEiJ_T0060631.1 MGP_CASTEiJ_G0026356.1 mouse_genomes_project 3 39528657 39544982 + MGP_CASTEiJ_P0060631 D3Ertd751e protein_coding protein_coding MGP_CASTEiJ_T0060632.1 MGP_CASTEiJ_G0026356.1 mouse_genomes_project 3 39528660 39545447 + MGP_CASTEiJ_P0060632 D3Ertd751e protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060633.1 MGP_CASTEiJ_G0026356.1 mouse_genomes_project 3 39528661 39544992 + MGP_CASTEiJ_P0060633 D3Ertd751e protein_coding protein_coding MGP_CASTEiJ_T0060634.1 MGP_CASTEiJ_G0026356.1 mouse_genomes_project 3 39528661 39544992 + MGP_CASTEiJ_P0060634 D3Ertd751e protein_coding protein_coding MGP_CASTEiJ_T0060635.1 MGP_CASTEiJ_G0026356.1 mouse_genomes_project 3 39528697 39544991 + MGP_CASTEiJ_P0060635 D3Ertd751e protein_coding protein_coding MGP_CASTEiJ_T0060636.1 MGP_CASTEiJ_G0026356.1 mouse_genomes_project 3 39528699 39529962 + D3Ertd751e protein_coding retained_intron MGP_CASTEiJ_T0060637.1 MGP_CASTEiJ_G0026356.1 mouse_genomes_project 3 39528706 39543714 + MGP_CASTEiJ_P0060637 D3Ertd751e protein_coding protein_coding MGP_CASTEiJ_T0060638.1 MGP_CASTEiJ_G0026356.1 mouse_genomes_project 3 39528768 39539855 + MGP_CASTEiJ_P0060638 D3Ertd751e protein_coding protein_coding MGP_CASTEiJ_T0060639.1 MGP_CASTEiJ_G0026356.1 mouse_genomes_project 3 39530707 39542213 + MGP_CASTEiJ_P0060639 D3Ertd751e protein_coding protein_coding MGP_CASTEiJ_T0060640.1 MGP_CASTEiJ_G0026356.1 mouse_genomes_project 3 39532569 39542229 + MGP_CASTEiJ_P0060640 D3Ertd751e protein_coding protein_coding MGP_CASTEiJ_T0060641.1 MGP_CASTEiJ_G0026356.1 mouse_genomes_project 3 39532799 39545009 + MGP_CASTEiJ_P0060641 D3Ertd751e protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060642.1 MGP_CASTEiJ_G0026356.1 mouse_genomes_project 3 39534657 39542561 + D3Ertd751e protein_coding retained_intron MGP_CASTEiJ_T0060643.1 MGP_CASTEiJ_G0026356.1 mouse_genomes_project 3 39537268 39542547 + MGP_CASTEiJ_P0060643 D3Ertd751e protein_coding protein_coding MGP_CASTEiJ_T0101006.1 MGP_CASTEiJ_G0037919.1 mouse_genomes_project 3 156593486 156593609 + Gm25757 snoRNA snoRNA MGP_CASTEiJ_T0013819.1 MGP_CASTEiJ_G0011982.1 mouse_genomes_project 3 117608724 117609453 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061165.1 MGP_CASTEiJ_G0026472.1 mouse_genomes_project 3 74955583 75039846 - MGP_CASTEiJ_P0061165 Golim4 protein_coding protein_coding MGP_CASTEiJ_T0061166.1 MGP_CASTEiJ_G0026472.1 mouse_genomes_project 3 74956678 75039866 - MGP_CASTEiJ_P0061166 Golim4 protein_coding protein_coding MGP_CASTEiJ_T0061167.1 MGP_CASTEiJ_G0026472.1 mouse_genomes_project 3 74956997 74959449 - Golim4 protein_coding retained_intron MGP_CASTEiJ_T0061168.1 MGP_CASTEiJ_G0026472.1 mouse_genomes_project 3 74958177 75039854 - MGP_CASTEiJ_P0061168 Golim4 protein_coding protein_coding MGP_CASTEiJ_T0061169.1 MGP_CASTEiJ_G0026472.1 mouse_genomes_project 3 74958363 75039234 - MGP_CASTEiJ_P0061169 Golim4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0061170.1 MGP_CASTEiJ_G0026472.1 mouse_genomes_project 3 74966862 74973817 - Golim4 protein_coding retained_intron MGP_CASTEiJ_T0061171.1 MGP_CASTEiJ_G0026472.1 mouse_genomes_project 3 74975495 74983016 - MGP_CASTEiJ_P0061171 Golim4 protein_coding protein_coding MGP_CASTEiJ_T0061172.1 MGP_CASTEiJ_G0026472.1 mouse_genomes_project 3 74979799 75039825 - Golim4 protein_coding retained_intron MGP_CASTEiJ_T0061173.1 MGP_CASTEiJ_G0026472.1 mouse_genomes_project 3 74991319 75039567 - Golim4 protein_coding retained_intron MGP_CASTEiJ_T0061174.1 MGP_CASTEiJ_G0026472.1 mouse_genomes_project 3 75038033 75039848 - Golim4 protein_coding retained_intron MGP_CASTEiJ_T0099049.1 MGP_CASTEiJ_G0035963.1 mouse_genomes_project 3 63700949 63977182 + sense_overlapping sense_overlapping MGP_CASTEiJ_T0062120.1 MGP_CASTEiJ_G0026696.1 mouse_genomes_project 3 92867813 92874659 + MGP_CASTEiJ_P0062120 S100a11 protein_coding protein_coding MGP_CASTEiJ_T0013605.1 MGP_CASTEiJ_G0011768.1 mouse_genomes_project 3 48864014 48864390 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061466.1 MGP_CASTEiJ_G0026538.1 mouse_genomes_project 3 87665701 87672508 + MGP_CASTEiJ_P0061466 Crabp2 protein_coding protein_coding MGP_CASTEiJ_T0061467.1 MGP_CASTEiJ_G0026538.1 mouse_genomes_project 3 87671275 87672117 + Crabp2 protein_coding retained_intron MGP_CASTEiJ_T0001227.1 MGP_CASTEiJ_G0001158.1 mouse_genomes_project 3 104663314 104671181 + TEC TEC MGP_CASTEiJ_T0007440.1 MGP_CASTEiJ_G0006100.1 mouse_genomes_project 3 95915798 95927583 + lincRNA lincRNA MGP_CASTEiJ_T0001282.1 MGP_CASTEiJ_G0001213.1 mouse_genomes_project 3 128434330 128440138 - TEC TEC MGP_CASTEiJ_T0001092.1 MGP_CASTEiJ_G0001025.1 mouse_genomes_project 3 30641322 30644832 - TEC TEC MGP_CASTEiJ_T0063256.1 MGP_CASTEiJ_G0026954.1 mouse_genomes_project 3 110724464 110729365 - MGP_CASTEiJ_P0063256 Prmt6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063257.1 MGP_CASTEiJ_G0026954.1 mouse_genomes_project 3 110724467 110729360 - MGP_CASTEiJ_P0063257 Prmt6 protein_coding protein_coding MGP_CASTEiJ_T0063258.1 MGP_CASTEiJ_G0026954.1 mouse_genomes_project 3 110726908 110729365 - MGP_CASTEiJ_P0063258 Prmt6 protein_coding protein_coding MGP_CASTEiJ_T0001115.1 MGP_CASTEiJ_G0001048.1 mouse_genomes_project 3 38761421 38765059 + TEC TEC MGP_CASTEiJ_T0062498.1 MGP_CASTEiJ_G0026769.1 mouse_genomes_project 3 95829074 95830738 - MGP_CASTEiJ_P0062498 Hist2h4 protein_coding protein_coding MGP_CASTEiJ_T0013573.1 MGP_CASTEiJ_G0011736.1 mouse_genomes_project 3 36209835 36210667 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001253.1 MGP_CASTEiJ_G0001184.1 mouse_genomes_project 3 122649373 122652932 - TEC TEC MGP_CASTEiJ_T0063705.1 MGP_CASTEiJ_G0027035.1 mouse_genomes_project 3 131377749 131443394 - MGP_CASTEiJ_P0063705 Ccdc109b protein_coding protein_coding MGP_CASTEiJ_T0063706.1 MGP_CASTEiJ_G0027035.1 mouse_genomes_project 3 131377764 131443236 - MGP_CASTEiJ_P0063706 Ccdc109b protein_coding protein_coding MGP_CASTEiJ_T0063707.1 MGP_CASTEiJ_G0027035.1 mouse_genomes_project 3 131379870 131443177 - MGP_CASTEiJ_P0063707 Ccdc109b protein_coding protein_coding MGP_CASTEiJ_T0063708.1 MGP_CASTEiJ_G0027035.1 mouse_genomes_project 3 131393577 131443312 - MGP_CASTEiJ_P0063708 Ccdc109b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063681.1 MGP_CASTEiJ_G0027030.1 mouse_genomes_project 3 131258487 131275841 - MGP_CASTEiJ_P0063681 Rrh protein_coding protein_coding MGP_CASTEiJ_T0063682.1 MGP_CASTEiJ_G0027030.1 mouse_genomes_project 3 131258488 131275841 - Rrh protein_coding processed_transcript MGP_CASTEiJ_T0063683.1 MGP_CASTEiJ_G0027030.1 mouse_genomes_project 3 131262681 131275853 - MGP_CASTEiJ_P0063683 Rrh protein_coding protein_coding MGP_CASTEiJ_T0063684.1 MGP_CASTEiJ_G0027030.1 mouse_genomes_project 3 131262684 131275839 - MGP_CASTEiJ_P0063684 Rrh protein_coding protein_coding MGP_CASTEiJ_T0063685.1 MGP_CASTEiJ_G0027030.1 mouse_genomes_project 3 131262910 131275935 - MGP_CASTEiJ_P0063685 Rrh protein_coding protein_coding MGP_CASTEiJ_T0063686.1 MGP_CASTEiJ_G0027030.1 mouse_genomes_project 3 131263019 131275810 - MGP_CASTEiJ_P0063686 Rrh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0063687.1 MGP_CASTEiJ_G0027030.1 mouse_genomes_project 3 131268759 131275842 - Rrh protein_coding processed_transcript MGP_CASTEiJ_T0063688.1 MGP_CASTEiJ_G0027030.1 mouse_genomes_project 3 131272786 131275806 - Rrh protein_coding retained_intron MGP_CASTEiJ_T0063765.1 MGP_CASTEiJ_G0027047.1 mouse_genomes_project 3 134171742 134187445 + MGP_CASTEiJ_P0063765 Gimd1 protein_coding protein_coding MGP_CASTEiJ_T0063766.1 MGP_CASTEiJ_G0027047.1 mouse_genomes_project 3 134176276 134186726 + MGP_CASTEiJ_P0063766 Gimd1 protein_coding protein_coding MGP_CASTEiJ_T0007459.1 MGP_CASTEiJ_G0006117.1 mouse_genomes_project 3 102555255 102556752 + Gm42682 lincRNA lincRNA MGP_CASTEiJ_T0102268.1 MGP_CASTEiJ_G0038993.1 mouse_genomes_project 3 63156465 63160699 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013586.1 MGP_CASTEiJ_G0011749.1 mouse_genomes_project 3 41651209 41651738 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007423.1 MGP_CASTEiJ_G0006086.1 mouse_genomes_project 3 88313115 88314397 - Gm37584 lincRNA lincRNA MGP_CASTEiJ_T0064243.1 MGP_CASTEiJ_G0027136.1 mouse_genomes_project 3 154071115 154184811 + MGP_CASTEiJ_P0064243 Adgrl4 protein_coding protein_coding MGP_CASTEiJ_T0064244.1 MGP_CASTEiJ_G0027136.1 mouse_genomes_project 3 154071157 154139817 + MGP_CASTEiJ_P0064244 Adgrl4 protein_coding protein_coding MGP_CASTEiJ_T0064245.1 MGP_CASTEiJ_G0027136.1 mouse_genomes_project 3 154071501 154137603 + Adgrl4 protein_coding processed_transcript MGP_CASTEiJ_T0064246.1 MGP_CASTEiJ_G0027136.1 mouse_genomes_project 3 154072324 154139788 + Adgrl4 protein_coding retained_intron MGP_CASTEiJ_T0064247.1 MGP_CASTEiJ_G0027136.1 mouse_genomes_project 3 154139691 154147089 + Adgrl4 protein_coding processed_transcript MGP_CASTEiJ_T0064248.1 MGP_CASTEiJ_G0027136.1 mouse_genomes_project 3 154157071 154161909 + Adgrl4 protein_coding processed_transcript MGP_CASTEiJ_T0013828.1 MGP_CASTEiJ_G0011991.1 mouse_genomes_project 3 122137258 122138024 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0061347.1 MGP_CASTEiJ_G0026513.1 mouse_genomes_project 3 85250036 85263942 - Fam160a1 protein_coding retained_intron MGP_CASTEiJ_T0061348.1 MGP_CASTEiJ_G0026513.1 mouse_genomes_project 3 85250038 85414577 - MGP_CASTEiJ_P0061348 Fam160a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0061349.1 MGP_CASTEiJ_G0026513.1 mouse_genomes_project 3 85250038 85338965 - MGP_CASTEiJ_P0061349 Fam160a1 protein_coding protein_coding MGP_CASTEiJ_T0061350.1 MGP_CASTEiJ_G0026513.1 mouse_genomes_project 3 85250040 85334164 - MGP_CASTEiJ_P0061350 Fam160a1 protein_coding protein_coding MGP_CASTEiJ_T0063689.1 MGP_CASTEiJ_G0027031.1 mouse_genomes_project 3 131278249 131284728 - MGP_CASTEiJ_P0063689 Gar1 protein_coding protein_coding MGP_CASTEiJ_T0063690.1 MGP_CASTEiJ_G0027031.1 mouse_genomes_project 3 131278253 131282698 - MGP_CASTEiJ_P0063690 Gar1 protein_coding protein_coding MGP_CASTEiJ_T0063691.1 MGP_CASTEiJ_G0027031.1 mouse_genomes_project 3 131278256 131279007 - Gar1 protein_coding retained_intron MGP_CASTEiJ_T0063692.1 MGP_CASTEiJ_G0027031.1 mouse_genomes_project 3 131278886 131280616 - Gar1 protein_coding retained_intron MGP_CASTEiJ_T0063693.1 MGP_CASTEiJ_G0027031.1 mouse_genomes_project 3 131278905 131284692 - Gar1 protein_coding processed_transcript MGP_CASTEiJ_T0063694.1 MGP_CASTEiJ_G0027031.1 mouse_genomes_project 3 131280175 131284265 - MGP_CASTEiJ_P0063694 Gar1 protein_coding protein_coding MGP_CASTEiJ_T0001333.1 MGP_CASTEiJ_G0001263.1 mouse_genomes_project 3 156031304 156034542 - TEC TEC MGP_CASTEiJ_T0061669.1 MGP_CASTEiJ_G0026573.1 mouse_genomes_project 3 88816619 88949970 + MGP_CASTEiJ_P0061669 Ash1l protein_coding protein_coding MGP_CASTEiJ_T0061671.1 MGP_CASTEiJ_G0026573.1 mouse_genomes_project 3 88834729 88949968 + MGP_CASTEiJ_P0061671 Ash1l protein_coding protein_coding MGP_CASTEiJ_T0061672.1 MGP_CASTEiJ_G0026573.1 mouse_genomes_project 3 88891438 88896520 + Ash1l protein_coding retained_intron MGP_CASTEiJ_T0061673.1 MGP_CASTEiJ_G0026573.1 mouse_genomes_project 3 88921178 88924726 + Ash1l protein_coding retained_intron MGP_CASTEiJ_T0013678.1 MGP_CASTEiJ_G0011841.1 mouse_genomes_project 3 71027288 71027793 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098588.1 MGP_CASTEiJ_G0035519.1 mouse_genomes_project 3 22764654 22764762 + Gm22832 rRNA rRNA MGP_CASTEiJ_T0062463.1 MGP_CASTEiJ_G0026756.1 mouse_genomes_project 3 95524998 95531814 - MGP_CASTEiJ_P0062463 Plekho1 protein_coding protein_coding MGP_CASTEiJ_T0062464.1 MGP_CASTEiJ_G0026756.1 mouse_genomes_project 3 95525117 95534135 - MGP_CASTEiJ_P0062464 Plekho1 protein_coding protein_coding MGP_CASTEiJ_T0062465.1 MGP_CASTEiJ_G0026756.1 mouse_genomes_project 3 95525583 95531868 - MGP_CASTEiJ_P0062465 Plekho1 protein_coding protein_coding MGP_CASTEiJ_T0062466.1 MGP_CASTEiJ_G0026756.1 mouse_genomes_project 3 95531480 95531814 - Plekho1 protein_coding retained_intron MGP_CASTEiJ_T0098919.1 MGP_CASTEiJ_G0035843.1 mouse_genomes_project 3 104459336 104460547 - 4930509H03Rik sense_intronic sense_intronic MGP_CASTEiJ_T0060958.1 MGP_CASTEiJ_G0026424.1 mouse_genomes_project 3 60101963 60109496 + MGP_CASTEiJ_P0060958 Rap2b protein_coding protein_coding MGP_CASTEiJ_T0062882.1 MGP_CASTEiJ_G0026864.1 mouse_genomes_project 3 104341409 104409817 - MGP_CASTEiJ_P0062882 Lrig2 protein_coding protein_coding MGP_CASTEiJ_T0062883.1 MGP_CASTEiJ_G0026864.1 mouse_genomes_project 3 104402302 104461074 - MGP_CASTEiJ_P0062883 Lrig2 protein_coding protein_coding MGP_CASTEiJ_T0062884.1 MGP_CASTEiJ_G0026864.1 mouse_genomes_project 3 104402303 104461062 - MGP_CASTEiJ_P0062884 Lrig2 protein_coding protein_coding MGP_CASTEiJ_T0062885.1 MGP_CASTEiJ_G0026864.1 mouse_genomes_project 3 104404877 104429116 - Lrig2 protein_coding retained_intron MGP_CASTEiJ_T0062886.1 MGP_CASTEiJ_G0026864.1 mouse_genomes_project 3 104405435 104461090 - MGP_CASTEiJ_P0062886 Lrig2 protein_coding protein_coding MGP_CASTEiJ_T0062887.1 MGP_CASTEiJ_G0026864.1 mouse_genomes_project 3 104405651 104461152 - Lrig2 protein_coding retained_intron MGP_CASTEiJ_T0062888.1 MGP_CASTEiJ_G0026864.1 mouse_genomes_project 3 104407512 104411115 - Lrig2 protein_coding retained_intron MGP_CASTEiJ_T0062889.1 MGP_CASTEiJ_G0026864.1 mouse_genomes_project 3 104430517 104460895 - Lrig2 protein_coding retained_intron MGP_CASTEiJ_T0062890.1 MGP_CASTEiJ_G0026864.1 mouse_genomes_project 3 104440832 104441870 - Lrig2 protein_coding retained_intron MGP_CASTEiJ_T0017276.1 MGP_CASTEiJ_G0014846.1 mouse_genomes_project 3 157137941 157141369 + AI606473 processed_transcript lincRNA MGP_CASTEiJ_T0017277.1 MGP_CASTEiJ_G0014846.1 mouse_genomes_project 3 157139109 157139911 + AI606473 processed_transcript retained_intron MGP_CASTEiJ_T0061039.1 MGP_CASTEiJ_G0026440.1 mouse_genomes_project 3 65028111 65034015 + MGP_CASTEiJ_P0061039 Ptx3 protein_coding protein_coding MGP_CASTEiJ_T0061040.1 MGP_CASTEiJ_G0026440.1 mouse_genomes_project 3 65028451 65029637 + Ptx3 protein_coding retained_intron MGP_CASTEiJ_T0007355.1 MGP_CASTEiJ_G0006039.1 mouse_genomes_project 3 51092332 51131994 + Gm2447 lincRNA lincRNA MGP_CASTEiJ_T0007356.1 MGP_CASTEiJ_G0006039.1 mouse_genomes_project 3 51119975 51131992 + Gm2447 lincRNA lincRNA MGP_CASTEiJ_T0007366.1 MGP_CASTEiJ_G0006046.1 mouse_genomes_project 3 56515970 56520533 - Gm42512 lincRNA lincRNA MGP_CASTEiJ_T0001196.1 MGP_CASTEiJ_G0001127.1 mouse_genomes_project 3 76755214 76761581 - TEC TEC MGP_CASTEiJ_T0062451.1 MGP_CASTEiJ_G0026754.1 mouse_genomes_project 3 95416255 95427891 - MGP_CASTEiJ_P0062451 Car14 protein_coding protein_coding MGP_CASTEiJ_T0062452.1 MGP_CASTEiJ_G0026754.1 mouse_genomes_project 3 95418227 95427885 - MGP_CASTEiJ_P0062452 Car14 protein_coding protein_coding MGP_CASTEiJ_T0062453.1 MGP_CASTEiJ_G0026754.1 mouse_genomes_project 3 95419975 95427884 - Car14 protein_coding retained_intron MGP_CASTEiJ_T0062454.1 MGP_CASTEiJ_G0026754.1 mouse_genomes_project 3 95420356 95426948 - Car14 protein_coding retained_intron MGP_CASTEiJ_T0004136.1 MGP_CASTEiJ_G0003646.1 mouse_genomes_project 3 82348115 82413472 + Rbm46os antisense antisense MGP_CASTEiJ_T0004137.1 MGP_CASTEiJ_G0003646.1 mouse_genomes_project 3 82348115 82415388 + Rbm46os antisense antisense MGP_CASTEiJ_T0004138.1 MGP_CASTEiJ_G0003646.1 mouse_genomes_project 3 82348156 82413507 + Rbm46os antisense antisense MGP_CASTEiJ_T0004139.1 MGP_CASTEiJ_G0003646.1 mouse_genomes_project 3 82376039 82416033 + Rbm46os antisense antisense MGP_CASTEiJ_T0004080.1 MGP_CASTEiJ_G0003604.1 mouse_genomes_project 3 27443235 27478901 + Mecomos antisense antisense MGP_CASTEiJ_T0004081.1 MGP_CASTEiJ_G0003604.1 mouse_genomes_project 3 27448427 27455064 + Mecomos antisense antisense MGP_CASTEiJ_T0013610.1 MGP_CASTEiJ_G0011773.1 mouse_genomes_project 3 50543357 50544109 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001339.1 MGP_CASTEiJ_G0001269.1 mouse_genomes_project 3 159540046 159542602 + TEC TEC MGP_CASTEiJ_T0004224.1 MGP_CASTEiJ_G0003700.1 mouse_genomes_project 3 117208702 117210326 - Gm42893 antisense antisense MGP_CASTEiJ_T0013784.1 MGP_CASTEiJ_G0011947.1 mouse_genomes_project 3 105993937 106001481 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0062702.1 MGP_CASTEiJ_G0026828.1 mouse_genomes_project 3 100675754 100715053 - MGP_CASTEiJ_P0062702 Ttf2 protein_coding protein_coding MGP_CASTEiJ_T0062703.1 MGP_CASTEiJ_G0026828.1 mouse_genomes_project 3 100678770 100689282 - Ttf2 protein_coding retained_intron MGP_CASTEiJ_T0062704.1 MGP_CASTEiJ_G0026828.1 mouse_genomes_project 3 100689274 100715053 - Ttf2 protein_coding retained_intron MGP_CASTEiJ_T0062705.1 MGP_CASTEiJ_G0026828.1 mouse_genomes_project 3 100690387 100695450 - MGP_CASTEiJ_P0062705 Ttf2 protein_coding protein_coding MGP_CASTEiJ_T0062706.1 MGP_CASTEiJ_G0026828.1 mouse_genomes_project 3 100702463 100703704 - Ttf2 protein_coding retained_intron MGP_CASTEiJ_T0061273.1 MGP_CASTEiJ_G0026494.1 mouse_genomes_project 3 82364096 82375536 - MGP_CASTEiJ_P0061273 Lrat protein_coding protein_coding MGP_CASTEiJ_T0063926.1 MGP_CASTEiJ_G0027073.1 mouse_genomes_project 3 139619269 139668685 + MGP_CASTEiJ_P0063926 Dnajb14 protein_coding protein_coding MGP_CASTEiJ_T0063927.1 MGP_CASTEiJ_G0027073.1 mouse_genomes_project 3 139619481 139647681 + Dnajb14 protein_coding retained_intron MGP_CASTEiJ_T0063928.1 MGP_CASTEiJ_G0027073.1 mouse_genomes_project 3 139619760 139653978 + MGP_CASTEiJ_P0063928 Dnajb14 protein_coding protein_coding MGP_CASTEiJ_T0063929.1 MGP_CASTEiJ_G0027073.1 mouse_genomes_project 3 139656969 139661506 + Dnajb14 protein_coding retained_intron MGP_CASTEiJ_T0007269.1 MGP_CASTEiJ_G0005975.1 mouse_genomes_project 3 9233824 9254543 - Gm10745 lincRNA lincRNA MGP_CASTEiJ_T0004151.1 MGP_CASTEiJ_G0003656.1 mouse_genomes_project 3 89236496 89246472 + 4731419I09Rik antisense antisense MGP_CASTEiJ_T0100999.1 MGP_CASTEiJ_G0037912.1 mouse_genomes_project 3 132391660 132391788 - Gm26090 snoRNA snoRNA MGP_CASTEiJ_T0013664.1 MGP_CASTEiJ_G0011827.1 mouse_genomes_project 3 68134907 68137173 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013645.1 MGP_CASTEiJ_G0011808.1 mouse_genomes_project 3 61641231 61641658 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004234.1 MGP_CASTEiJ_G0003707.1 mouse_genomes_project 3 124459144 124462272 - Gm43591 antisense antisense MGP_CASTEiJ_T0060837.1 MGP_CASTEiJ_G0026394.1 mouse_genomes_project 3 54290844 54293339 + MGP_CASTEiJ_P0060837 Mab21l1 protein_coding protein_coding MGP_CASTEiJ_T0013492.1 MGP_CASTEiJ_G0011655.1 mouse_genomes_project 3 9080747 9081765 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102297.1 MGP_CASTEiJ_G0039022.1 mouse_genomes_project 3 108392667 108395395 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013741.1 MGP_CASTEiJ_G0011904.1 mouse_genomes_project 3 94247904 94248727 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060047.1 MGP_CASTEiJ_G0026248.1 mouse_genomes_project 3 12189861 12217356 - MGP_CASTEiJ_P0060047 Car1 protein_coding protein_coding MGP_CASTEiJ_T0004163.1 MGP_CASTEiJ_G0003665.1 mouse_genomes_project 3 94433246 94435833 - A730011C13Rik antisense antisense MGP_CASTEiJ_T0004164.1 MGP_CASTEiJ_G0003665.1 mouse_genomes_project 3 94433879 94436193 - A730011C13Rik antisense antisense MGP_CASTEiJ_T0098937.1 MGP_CASTEiJ_G0035861.1 mouse_genomes_project 3 156196649 156207699 - 1700015C17Rik sense_intronic sense_intronic MGP_CASTEiJ_T0062047.1 MGP_CASTEiJ_G0026640.1 mouse_genomes_project 3 90696531 90697607 + MGP_CASTEiJ_P0062047 S100a8 protein_coding protein_coding MGP_CASTEiJ_T0062048.1 MGP_CASTEiJ_G0026640.1 mouse_genomes_project 3 90696866 90697536 + S100a8 protein_coding retained_intron MGP_CASTEiJ_T0001292.1 MGP_CASTEiJ_G0001222.1 mouse_genomes_project 3 130789326 130792848 + TEC TEC MGP_CASTEiJ_T0060219.1 MGP_CASTEiJ_G0026286.1 mouse_genomes_project 3 26202831 26204811 + MGP_CASTEiJ_P0060219 Rpl22l1 protein_coding protein_coding MGP_CASTEiJ_T0060220.1 MGP_CASTEiJ_G0026286.1 mouse_genomes_project 3 26202864 26204820 + MGP_CASTEiJ_P0060220 Rpl22l1 protein_coding protein_coding MGP_CASTEiJ_T0060221.1 MGP_CASTEiJ_G0026286.1 mouse_genomes_project 3 26202903 26204811 + Rpl22l1 protein_coding retained_intron MGP_CASTEiJ_T0060222.1 MGP_CASTEiJ_G0026286.1 mouse_genomes_project 3 26202905 26204818 + MGP_CASTEiJ_P0060222 Rpl22l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0060223.1 MGP_CASTEiJ_G0026286.1 mouse_genomes_project 3 26202960 26204096 + Rpl22l1 protein_coding processed_transcript MGP_CASTEiJ_T0060224.1 MGP_CASTEiJ_G0026286.1 mouse_genomes_project 3 26202992 26204690 + Rpl22l1 protein_coding processed_transcript MGP_CASTEiJ_T0060225.1 MGP_CASTEiJ_G0026286.1 mouse_genomes_project 3 26203058 26204811 + Rpl22l1 protein_coding processed_transcript MGP_CASTEiJ_T0060226.1 MGP_CASTEiJ_G0026286.1 mouse_genomes_project 3 26203853 26204811 + Rpl22l1 protein_coding retained_intron MGP_CASTEiJ_T0060227.1 MGP_CASTEiJ_G0026286.1 mouse_genomes_project 3 26203894 26204812 + Rpl22l1 protein_coding retained_intron MGP_CASTEiJ_T0013615.1 MGP_CASTEiJ_G0011778.1 mouse_genomes_project 3 52430858 52431593 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0060178.1 MGP_CASTEiJ_G0026278.1 mouse_genomes_project 3 24639221 24662276 + MGP_CASTEiJ_P0060178 Tnfsf10 protein_coding protein_coding MGP_CASTEiJ_T0060179.1 MGP_CASTEiJ_G0026278.1 mouse_genomes_project 3 24639254 24664868 + MGP_CASTEiJ_P0060179 Tnfsf10 protein_coding protein_coding MGP_CASTEiJ_T0063808.1 MGP_CASTEiJ_G0027055.1 mouse_genomes_project 3 135038541 135050434 - Tet2 protein_coding retained_intron MGP_CASTEiJ_T0063809.1 MGP_CASTEiJ_G0027055.1 mouse_genomes_project 3 135041125 135122383 - MGP_CASTEiJ_P0063809 Tet2 protein_coding protein_coding MGP_CASTEiJ_T0063810.1 MGP_CASTEiJ_G0027055.1 mouse_genomes_project 3 135041125 135122361 - MGP_CASTEiJ_P0063810 Tet2 protein_coding protein_coding MGP_CASTEiJ_T0063811.1 MGP_CASTEiJ_G0027055.1 mouse_genomes_project 3 135041787 135047761 - Tet2 protein_coding retained_intron MGP_CASTEiJ_T0063812.1 MGP_CASTEiJ_G0027055.1 mouse_genomes_project 3 135043468 135052175 - MGP_CASTEiJ_P0063812 Tet2 protein_coding protein_coding MGP_CASTEiJ_T0063813.1 MGP_CASTEiJ_G0027055.1 mouse_genomes_project 3 135050671 135054530 - Tet2 protein_coding retained_intron MGP_CASTEiJ_T0063814.1 MGP_CASTEiJ_G0027055.1 mouse_genomes_project 3 135054659 135056323 - Tet2 protein_coding retained_intron MGP_CASTEiJ_T0063815.1 MGP_CASTEiJ_G0027055.1 mouse_genomes_project 3 135064047 135123216 - MGP_CASTEiJ_P0063815 Tet2 protein_coding protein_coding MGP_CASTEiJ_T0063816.1 MGP_CASTEiJ_G0027055.1 mouse_genomes_project 3 135088115 135122295 - Tet2 protein_coding retained_intron MGP_CASTEiJ_T0063817.1 MGP_CASTEiJ_G0027055.1 mouse_genomes_project 3 135115676 135122279 - Tet2 protein_coding processed_transcript MGP_CASTEiJ_T0004218.1 MGP_CASTEiJ_G0003694.1 mouse_genomes_project 3 108658161 108660475 - antisense antisense MGP_CASTEiJ_T0062930.1 MGP_CASTEiJ_G0026875.1 mouse_genomes_project 3 105452510 105684929 + MGP_CASTEiJ_P0062930 Kcnd3 protein_coding protein_coding MGP_CASTEiJ_T0062931.1 MGP_CASTEiJ_G0026875.1 mouse_genomes_project 3 105452776 105678512 + Kcnd3 protein_coding retained_intron MGP_CASTEiJ_T0062932.1 MGP_CASTEiJ_G0026875.1 mouse_genomes_project 3 105453289 105680382 + MGP_CASTEiJ_P0062932 Kcnd3 protein_coding protein_coding MGP_CASTEiJ_T0062933.1 MGP_CASTEiJ_G0026875.1 mouse_genomes_project 3 105458979 105680231 + MGP_CASTEiJ_P0062933 Kcnd3 protein_coding protein_coding MGP_CASTEiJ_T0062934.1 MGP_CASTEiJ_G0026875.1 mouse_genomes_project 3 105679926 105680766 + Kcnd3 protein_coding processed_transcript MGP_CASTEiJ_T0004633.1 MGP_CASTEiJ_G0004008.1 mouse_genomes_project 5 108023768 108053709 - Gm17202 antisense antisense MGP_CASTEiJ_T0001756.1 MGP_CASTEiJ_G0001679.1 mouse_genomes_project 5 125790998 125792403 - TEC TEC MGP_CASTEiJ_T0004718.1 MGP_CASTEiJ_G0004070.1 mouse_genomes_project 5 137496973 137500629 + Gm10369 antisense antisense MGP_CASTEiJ_T0072059.1 MGP_CASTEiJ_G0028691.1 mouse_genomes_project 5 64438252 64461361 + N4bp2 protein_coding processed_transcript MGP_CASTEiJ_T0072060.1 MGP_CASTEiJ_G0028691.1 mouse_genomes_project 5 64438252 64449798 + N4bp2 protein_coding retained_intron MGP_CASTEiJ_T0072061.1 MGP_CASTEiJ_G0028691.1 mouse_genomes_project 5 64438393 64494952 + MGP_CASTEiJ_P0072061 N4bp2 protein_coding protein_coding MGP_CASTEiJ_T0072062.1 MGP_CASTEiJ_G0028691.1 mouse_genomes_project 5 64438499 64508469 + MGP_CASTEiJ_P0072062 N4bp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0072063.1 MGP_CASTEiJ_G0028691.1 mouse_genomes_project 5 64458040 64460203 + N4bp2 protein_coding retained_intron MGP_CASTEiJ_T0072064.1 MGP_CASTEiJ_G0028691.1 mouse_genomes_project 5 64478603 64481731 + N4bp2 protein_coding retained_intron MGP_CASTEiJ_T0072065.1 MGP_CASTEiJ_G0028691.1 mouse_genomes_project 5 64487439 64492704 + N4bp2 protein_coding retained_intron MGP_CASTEiJ_T0072066.1 MGP_CASTEiJ_G0028691.1 mouse_genomes_project 5 64502870 64505241 + N4bp2 protein_coding retained_intron MGP_CASTEiJ_T0070177.1 MGP_CASTEiJ_G0028377.1 mouse_genomes_project 5 700024 750649 + Krit1 protein_coding retained_intron MGP_CASTEiJ_T0070178.1 MGP_CASTEiJ_G0028377.1 mouse_genomes_project 5 700024 750724 + MGP_CASTEiJ_P0070178 Krit1 protein_coding protein_coding MGP_CASTEiJ_T0070179.1 MGP_CASTEiJ_G0028377.1 mouse_genomes_project 5 700025 710784 + Krit1 protein_coding retained_intron MGP_CASTEiJ_T0070180.1 MGP_CASTEiJ_G0028377.1 mouse_genomes_project 5 700029 750724 + MGP_CASTEiJ_P0070180 Krit1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070181.1 MGP_CASTEiJ_G0028377.1 mouse_genomes_project 5 700030 754947 + MGP_CASTEiJ_P0070181 Krit1 protein_coding protein_coding MGP_CASTEiJ_T0070182.1 MGP_CASTEiJ_G0028377.1 mouse_genomes_project 5 700245 753686 + MGP_CASTEiJ_P0070182 Krit1 protein_coding protein_coding MGP_CASTEiJ_T0070183.1 MGP_CASTEiJ_G0028377.1 mouse_genomes_project 5 701080 706522 + MGP_CASTEiJ_P0070183 Krit1 protein_coding protein_coding MGP_CASTEiJ_T0070184.1 MGP_CASTEiJ_G0028377.1 mouse_genomes_project 5 702107 710577 + Krit1 protein_coding retained_intron MGP_CASTEiJ_T0070185.1 MGP_CASTEiJ_G0028377.1 mouse_genomes_project 5 711841 718326 + Krit1 protein_coding retained_intron MGP_CASTEiJ_T0070186.1 MGP_CASTEiJ_G0028377.1 mouse_genomes_project 5 714754 719739 + Krit1 protein_coding retained_intron MGP_CASTEiJ_T0070187.1 MGP_CASTEiJ_G0028377.1 mouse_genomes_project 5 722922 724862 + Krit1 protein_coding retained_intron MGP_CASTEiJ_T0007873.1 MGP_CASTEiJ_G0006440.1 mouse_genomes_project 5 25210324 25265928 - Gm26608 lincRNA lincRNA MGP_CASTEiJ_T0007874.1 MGP_CASTEiJ_G0006440.1 mouse_genomes_project 5 25249300 25251001 - Gm26608 lincRNA lincRNA MGP_CASTEiJ_T0070286.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5068500 5361043 - MGP_CASTEiJ_P0070286 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070287.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5068500 5360944 - MGP_CASTEiJ_P0070287 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070288.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5068500 5361043 - MGP_CASTEiJ_P0070288 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070289.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5068500 5360944 - MGP_CASTEiJ_P0070289 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070290.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5068500 5360944 - MGP_CASTEiJ_P0070290 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070291.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5073971 5118627 - MGP_CASTEiJ_P0070291 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070292.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5074821 5112488 - MGP_CASTEiJ_P0070292 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070293.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5074821 5112488 - MGP_CASTEiJ_P0070293 Adam22 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070294.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5078560 5112488 - MGP_CASTEiJ_P0070294 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070295.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5078560 5112488 - MGP_CASTEiJ_P0070295 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070296.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5078560 5112488 - MGP_CASTEiJ_P0070296 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070297.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5078560 5112488 - MGP_CASTEiJ_P0070297 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070298.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5078560 5112488 - MGP_CASTEiJ_P0070298 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070299.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5078560 5112488 - MGP_CASTEiJ_P0070299 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070300.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5078560 5112488 - MGP_CASTEiJ_P0070300 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070301.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5078560 5112488 - MGP_CASTEiJ_P0070301 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070302.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5078560 5112488 - MGP_CASTEiJ_P0070302 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070303.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5078560 5112488 - MGP_CASTEiJ_P0070303 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070304.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5085351 5087662 - Adam22 protein_coding retained_intron MGP_CASTEiJ_T0070305.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5089706 5361039 - MGP_CASTEiJ_P0070305 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070306.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5089769 5112488 - MGP_CASTEiJ_P0070306 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070307.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5145201 5361043 - MGP_CASTEiJ_P0070307 Adam22 protein_coding protein_coding MGP_CASTEiJ_T0070308.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5226347 5361096 - Adam22 protein_coding processed_transcript MGP_CASTEiJ_T0070309.1 MGP_CASTEiJ_G0028395.1 mouse_genomes_project 5 5359924 5361122 - Adam22 protein_coding retained_intron MGP_CASTEiJ_T0008101.1 MGP_CASTEiJ_G0006603.1 mouse_genomes_project 5 114160768 114171578 + Gm43095 lincRNA lincRNA MGP_CASTEiJ_T0072025.1 MGP_CASTEiJ_G0028686.1 mouse_genomes_project 5 64067480 64089959 - MGP_CASTEiJ_P0072025 Ugdh protein_coding protein_coding MGP_CASTEiJ_T0072026.1 MGP_CASTEiJ_G0028686.1 mouse_genomes_project 5 64067483 64079725 - Ugdh protein_coding retained_intron MGP_CASTEiJ_T0072027.1 MGP_CASTEiJ_G0028686.1 mouse_genomes_project 5 64071765 64077055 - Ugdh protein_coding retained_intron MGP_CASTEiJ_T0072028.1 MGP_CASTEiJ_G0028686.1 mouse_genomes_project 5 64077573 64082423 - MGP_CASTEiJ_P0072028 Ugdh protein_coding protein_coding MGP_CASTEiJ_T0001821.1 MGP_CASTEiJ_G0001742.1 mouse_genomes_project 5 140351802 140352770 + TEC TEC MGP_CASTEiJ_T0099882.1 MGP_CASTEiJ_G0036795.1 mouse_genomes_project 5 68260320 68260427 - Gm23932 snRNA snRNA MGP_CASTEiJ_T0014521.1 MGP_CASTEiJ_G0012684.1 mouse_genomes_project 5 74226480 74226769 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072756.1 MGP_CASTEiJ_G0028835.1 mouse_genomes_project 5 90876042 90879951 + Cxcl5 protein_coding retained_intron MGP_CASTEiJ_T0072757.1 MGP_CASTEiJ_G0028835.1 mouse_genomes_project 5 90876060 90879951 + MGP_CASTEiJ_P0072757 Cxcl5 protein_coding protein_coding MGP_CASTEiJ_T0074215.1 MGP_CASTEiJ_G0029137.1 mouse_genomes_project 5 123540137 123592480 - MGP_CASTEiJ_P0074215 Acad10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0074216.1 MGP_CASTEiJ_G0029137.1 mouse_genomes_project 5 123540143 123594125 - MGP_CASTEiJ_P0074216 Acad10 protein_coding protein_coding MGP_CASTEiJ_T0074217.1 MGP_CASTEiJ_G0029137.1 mouse_genomes_project 5 123544980 123594144 - Acad10 protein_coding retained_intron MGP_CASTEiJ_T0075150.1 MGP_CASTEiJ_G0029289.1 mouse_genomes_project 5 138504123 138521317 + MGP_CASTEiJ_P0075150 Rhbdd2 protein_coding protein_coding MGP_CASTEiJ_T0075151.1 MGP_CASTEiJ_G0029289.1 mouse_genomes_project 5 138504159 138521384 + MGP_CASTEiJ_P0075151 Rhbdd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075152.1 MGP_CASTEiJ_G0029289.1 mouse_genomes_project 5 138504209 138511006 + Rhbdd2 protein_coding processed_transcript MGP_CASTEiJ_T0075153.1 MGP_CASTEiJ_G0029289.1 mouse_genomes_project 5 138504221 138507138 + Rhbdd2 protein_coding retained_intron MGP_CASTEiJ_T0075154.1 MGP_CASTEiJ_G0029289.1 mouse_genomes_project 5 138504228 138508107 + Rhbdd2 protein_coding retained_intron MGP_CASTEiJ_T0075155.1 MGP_CASTEiJ_G0029289.1 mouse_genomes_project 5 138506626 138513849 + MGP_CASTEiJ_P0075155 Rhbdd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075156.1 MGP_CASTEiJ_G0029289.1 mouse_genomes_project 5 138508093 138519466 + Rhbdd2 protein_coding retained_intron MGP_CASTEiJ_T0007906.1 MGP_CASTEiJ_G0006459.1 mouse_genomes_project 5 36950686 37013303 - Gm43453 lincRNA lincRNA MGP_CASTEiJ_T0004510.1 MGP_CASTEiJ_G0003915.1 mouse_genomes_project 5 18990682 19038995 + Gm10475 antisense antisense MGP_CASTEiJ_T0001618.1 MGP_CASTEiJ_G0001542.1 mouse_genomes_project 5 68421303 68421567 - TEC TEC MGP_CASTEiJ_T0001458.1 MGP_CASTEiJ_G0001384.1 mouse_genomes_project 5 34522550 34522676 + TEC TEC MGP_CASTEiJ_T0001465.1 MGP_CASTEiJ_G0001391.1 mouse_genomes_project 5 40945518 40947843 + TEC TEC MGP_CASTEiJ_T0071245.1 MGP_CASTEiJ_G0028558.1 mouse_genomes_project 5 31113059 31118269 - MGP_CASTEiJ_P0071245 Tmem129 protein_coding protein_coding MGP_CASTEiJ_T0071246.1 MGP_CASTEiJ_G0028558.1 mouse_genomes_project 5 31113062 31117752 - Tmem129 protein_coding retained_intron MGP_CASTEiJ_T0071247.1 MGP_CASTEiJ_G0028558.1 mouse_genomes_project 5 31113965 31115333 - MGP_CASTEiJ_P0071247 Tmem129 protein_coding protein_coding MGP_CASTEiJ_T0071248.1 MGP_CASTEiJ_G0028558.1 mouse_genomes_project 5 31115404 31117709 - Tmem129 protein_coding retained_intron MGP_CASTEiJ_T0098623.1 MGP_CASTEiJ_G0035554.1 mouse_genomes_project 5 153064093 153064211 - n-R5s179 rRNA rRNA MGP_CASTEiJ_T0070840.1 MGP_CASTEiJ_G0028496.1 mouse_genomes_project 5 27500668 27541482 + MGP_CASTEiJ_P0070840 protein_coding protein_coding MGP_CASTEiJ_T0070841.1 MGP_CASTEiJ_G0028496.1 mouse_genomes_project 5 27500722 27502760 + protein_coding retained_intron MGP_CASTEiJ_T0070842.1 MGP_CASTEiJ_G0028496.1 mouse_genomes_project 5 27500727 27519740 + protein_coding retained_intron MGP_CASTEiJ_T0070843.1 MGP_CASTEiJ_G0028496.1 mouse_genomes_project 5 27500734 27527537 + protein_coding retained_intron MGP_CASTEiJ_T0070844.1 MGP_CASTEiJ_G0028496.1 mouse_genomes_project 5 27500737 27526776 + MGP_CASTEiJ_P0070844 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070845.1 MGP_CASTEiJ_G0028496.1 mouse_genomes_project 5 27500761 27538030 + MGP_CASTEiJ_P0070845 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070846.1 MGP_CASTEiJ_G0028496.1 mouse_genomes_project 5 27532110 27536045 + protein_coding retained_intron MGP_CASTEiJ_T0070847.1 MGP_CASTEiJ_G0028496.1 mouse_genomes_project 5 27532592 27536299 + protein_coding processed_transcript MGP_CASTEiJ_T0074490.1 MGP_CASTEiJ_G0029177.1 mouse_genomes_project 5 125637443 125668925 - MGP_CASTEiJ_P0074490 protein_coding protein_coding MGP_CASTEiJ_T0074491.1 MGP_CASTEiJ_G0029177.1 mouse_genomes_project 5 125649579 125653827 - protein_coding retained_intron MGP_CASTEiJ_T0074492.1 MGP_CASTEiJ_G0029177.1 mouse_genomes_project 5 125659947 125665515 - protein_coding retained_intron MGP_CASTEiJ_T0074493.1 MGP_CASTEiJ_G0029177.1 mouse_genomes_project 5 125661649 125668866 - MGP_CASTEiJ_P0074493 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0099917.1 MGP_CASTEiJ_G0036830.1 mouse_genomes_project 5 119649935 119650042 - Gm26411 snRNA snRNA MGP_CASTEiJ_T0008046.1 MGP_CASTEiJ_G0006570.1 mouse_genomes_project 5 106852690 106859726 + lincRNA lincRNA MGP_CASTEiJ_T0073159.1 MGP_CASTEiJ_G0028926.1 mouse_genomes_project 5 104624117 104639208 + MGP_CASTEiJ_P0073159 BC005561 protein_coding protein_coding MGP_CASTEiJ_T0070261.1 MGP_CASTEiJ_G0028389.1 mouse_genomes_project 5 2668522 2699272 - MGP_CASTEiJ_P0070261 Steap2 protein_coding protein_coding MGP_CASTEiJ_T0070262.1 MGP_CASTEiJ_G0028389.1 mouse_genomes_project 5 2668524 2686644 - MGP_CASTEiJ_P0070262 Steap2 protein_coding protein_coding MGP_CASTEiJ_T0070263.1 MGP_CASTEiJ_G0028389.1 mouse_genomes_project 5 2669647 2698755 - MGP_CASTEiJ_P0070263 Steap2 protein_coding protein_coding MGP_CASTEiJ_T0070264.1 MGP_CASTEiJ_G0028389.1 mouse_genomes_project 5 2674519 2698747 - MGP_CASTEiJ_P0070264 Steap2 protein_coding protein_coding MGP_CASTEiJ_T0070265.1 MGP_CASTEiJ_G0028389.1 mouse_genomes_project 5 2675064 2698762 - MGP_CASTEiJ_P0070265 Steap2 protein_coding protein_coding MGP_CASTEiJ_T0070266.1 MGP_CASTEiJ_G0028389.1 mouse_genomes_project 5 2675298 2680848 - Steap2 protein_coding processed_transcript MGP_CASTEiJ_T0070267.1 MGP_CASTEiJ_G0028389.1 mouse_genomes_project 5 2675303 2698755 - MGP_CASTEiJ_P0070267 Steap2 protein_coding protein_coding MGP_CASTEiJ_T0070268.1 MGP_CASTEiJ_G0028389.1 mouse_genomes_project 5 2677072 2699020 - MGP_CASTEiJ_P0070268 Steap2 protein_coding protein_coding MGP_CASTEiJ_T0070269.1 MGP_CASTEiJ_G0028389.1 mouse_genomes_project 5 2679658 2699227 - Steap2 protein_coding retained_intron MGP_CASTEiJ_T0011271.1 MGP_CASTEiJ_G0009459.1 mouse_genomes_project 5 100355059 100355239 + Gm27286 misc_RNA misc_RNA MGP_CASTEiJ_T0004558.1 MGP_CASTEiJ_G0003953.1 mouse_genomes_project 5 43240195 43257293 + Gm42413 antisense antisense MGP_CASTEiJ_T0074434.1 MGP_CASTEiJ_G0029166.1 mouse_genomes_project 5 125177541 125209794 - MGP_CASTEiJ_P0074434 Rhof protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074435.1 MGP_CASTEiJ_G0029166.1 mouse_genomes_project 5 125177541 125209729 - MGP_CASTEiJ_P0074435 Rhof protein_coding protein_coding MGP_CASTEiJ_T0074436.1 MGP_CASTEiJ_G0029166.1 mouse_genomes_project 5 125185653 125209762 - Rhof protein_coding processed_transcript MGP_CASTEiJ_T0074437.1 MGP_CASTEiJ_G0029166.1 mouse_genomes_project 5 125194005 125210048 - MGP_CASTEiJ_P0074437 Rhof protein_coding protein_coding MGP_CASTEiJ_T0014444.1 MGP_CASTEiJ_G0012607.1 mouse_genomes_project 5 36179800 36180004 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071236.1 MGP_CASTEiJ_G0028556.1 mouse_genomes_project 5 31087281 31089436 + MGP_CASTEiJ_P0071236 Gm9903 protein_coding protein_coding MGP_CASTEiJ_T0001473.1 MGP_CASTEiJ_G0001399.1 mouse_genomes_project 5 41667482 41668028 - TEC TEC MGP_CASTEiJ_T0001478.1 MGP_CASTEiJ_G0001404.1 mouse_genomes_project 5 42242937 42247362 - TEC TEC MGP_CASTEiJ_T0074331.1 MGP_CASTEiJ_G0029154.1 mouse_genomes_project 5 124436896 124459426 + MGP_CASTEiJ_P0074331 Anapc7 protein_coding protein_coding MGP_CASTEiJ_T0074332.1 MGP_CASTEiJ_G0029154.1 mouse_genomes_project 5 124437646 124459426 + MGP_CASTEiJ_P0074332 Anapc7 protein_coding protein_coding MGP_CASTEiJ_T0074333.1 MGP_CASTEiJ_G0029154.1 mouse_genomes_project 5 124437683 124457934 + MGP_CASTEiJ_P0074333 Anapc7 protein_coding protein_coding MGP_CASTEiJ_T0074334.1 MGP_CASTEiJ_G0029154.1 mouse_genomes_project 5 124453857 124454969 + Anapc7 protein_coding retained_intron MGP_CASTEiJ_T0074335.1 MGP_CASTEiJ_G0029154.1 mouse_genomes_project 5 124454622 124456298 + Anapc7 protein_coding retained_intron MGP_CASTEiJ_T0074336.1 MGP_CASTEiJ_G0029154.1 mouse_genomes_project 5 124455869 124456277 + MGP_CASTEiJ_P0074336 Anapc7 protein_coding protein_coding MGP_CASTEiJ_T0075598.1 MGP_CASTEiJ_G0029375.1 mouse_genomes_project 5 142114311 142116311 + Gm5294 protein_coding unprocessed_pseudogene MGP_CASTEiJ_T0075599.1 MGP_CASTEiJ_G0029375.1 mouse_genomes_project 5 142115015 142116554 + MGP_CASTEiJ_P0075599 Gm5294 protein_coding protein_coding MGP_CASTEiJ_T0099897.1 MGP_CASTEiJ_G0036810.1 mouse_genomes_project 5 85863561 85863731 + Gm24524 snRNA snRNA MGP_CASTEiJ_T0014403.1 MGP_CASTEiJ_G0012566.1 mouse_genomes_project 5 22739174 22739448 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001703.1 MGP_CASTEiJ_G0001626.1 mouse_genomes_project 5 114131762 114133659 - TEC TEC MGP_CASTEiJ_T0071776.1 MGP_CASTEiJ_G0028644.1 mouse_genomes_project 5 43484827 43520611 + MGP_CASTEiJ_P0071776 Ncapg protein_coding protein_coding MGP_CASTEiJ_T0071777.1 MGP_CASTEiJ_G0028644.1 mouse_genomes_project 5 43484931 43515525 + MGP_CASTEiJ_P0071777 Ncapg protein_coding unknown_likely_coding MGP_CASTEiJ_T0071778.1 MGP_CASTEiJ_G0028644.1 mouse_genomes_project 5 43493176 43520190 + Ncapg protein_coding retained_intron MGP_CASTEiJ_T0071779.1 MGP_CASTEiJ_G0028644.1 mouse_genomes_project 5 43495027 43497116 + Ncapg protein_coding retained_intron MGP_CASTEiJ_T0071780.1 MGP_CASTEiJ_G0028644.1 mouse_genomes_project 5 43495078 43520136 + Ncapg protein_coding retained_intron MGP_CASTEiJ_T0071781.1 MGP_CASTEiJ_G0028644.1 mouse_genomes_project 5 43510449 43515335 + Ncapg protein_coding retained_intron MGP_CASTEiJ_T0071784.1 MGP_CASTEiJ_G0028644.1 mouse_genomes_project 5 43517069 43520133 + Ncapg protein_coding retained_intron MGP_CASTEiJ_T0007863.1 MGP_CASTEiJ_G0006434.1 mouse_genomes_project 5 22162871 22175143 + 1500035N22Rik lincRNA lincRNA MGP_CASTEiJ_T0074913.1 MGP_CASTEiJ_G0029252.1 mouse_genomes_project 5 133457138 133935554 - MGP_CASTEiJ_P0074913 Wbscr17 protein_coding protein_coding MGP_CASTEiJ_T0074914.1 MGP_CASTEiJ_G0029252.1 mouse_genomes_project 5 133565178 133935129 - MGP_CASTEiJ_P0074914 Wbscr17 protein_coding protein_coding MGP_CASTEiJ_T0074915.1 MGP_CASTEiJ_G0029252.1 mouse_genomes_project 5 133689215 133933968 - Wbscr17 protein_coding retained_intron MGP_CASTEiJ_T0074916.1 MGP_CASTEiJ_G0029252.1 mouse_genomes_project 5 133755176 133934926 - Wbscr17 protein_coding retained_intron MGP_CASTEiJ_T0074917.1 MGP_CASTEiJ_G0029252.1 mouse_genomes_project 5 133933902 133935131 - Wbscr17 protein_coding processed_transcript MGP_CASTEiJ_T0014493.1 MGP_CASTEiJ_G0012656.1 mouse_genomes_project 5 60200938 60201563 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004499.1 MGP_CASTEiJ_G0003906.1 mouse_genomes_project 5 514553 516498 - 4833413G10Rik antisense antisense MGP_CASTEiJ_T0071957.1 MGP_CASTEiJ_G0028674.1 mouse_genomes_project 5 62710579 62727811 + MGP_CASTEiJ_P0071957 Tbc1d1 protein_coding protein_coding MGP_CASTEiJ_T0071958.1 MGP_CASTEiJ_G0028674.1 mouse_genomes_project 5 62713654 62920547 + MGP_CASTEiJ_P0071958 Tbc1d1 protein_coding protein_coding MGP_CASTEiJ_T0071959.1 MGP_CASTEiJ_G0028674.1 mouse_genomes_project 5 62714023 62920547 + MGP_CASTEiJ_P0071959 Tbc1d1 protein_coding protein_coding MGP_CASTEiJ_T0071960.1 MGP_CASTEiJ_G0028674.1 mouse_genomes_project 5 62714414 62728551 + Tbc1d1 protein_coding retained_intron MGP_CASTEiJ_T0071961.1 MGP_CASTEiJ_G0028674.1 mouse_genomes_project 5 62714414 62920547 + MGP_CASTEiJ_P0071961 Tbc1d1 protein_coding protein_coding MGP_CASTEiJ_T0071962.1 MGP_CASTEiJ_G0028674.1 mouse_genomes_project 5 62791849 62920547 + MGP_CASTEiJ_P0071962 Tbc1d1 protein_coding protein_coding MGP_CASTEiJ_T0071963.1 MGP_CASTEiJ_G0028674.1 mouse_genomes_project 5 62840317 62849649 + MGP_CASTEiJ_P0071963 Tbc1d1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071964.1 MGP_CASTEiJ_G0028674.1 mouse_genomes_project 5 62865344 62920542 + Tbc1d1 protein_coding processed_transcript MGP_CASTEiJ_T0071896.1 MGP_CASTEiJ_G0028661.1 mouse_genomes_project 5 51345009 51346517 + Smim20 protein_coding retained_intron MGP_CASTEiJ_T0071897.1 MGP_CASTEiJ_G0028661.1 mouse_genomes_project 5 51345064 51358075 + MGP_CASTEiJ_P0071897 Smim20 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071898.1 MGP_CASTEiJ_G0028661.1 mouse_genomes_project 5 51345064 51358075 + MGP_CASTEiJ_P0071898 Smim20 protein_coding protein_coding MGP_CASTEiJ_T0071899.1 MGP_CASTEiJ_G0028661.1 mouse_genomes_project 5 51345103 51358075 + MGP_CASTEiJ_P0071899 Smim20 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071900.1 MGP_CASTEiJ_G0028661.1 mouse_genomes_project 5 51345116 51347203 + Smim20 protein_coding retained_intron MGP_CASTEiJ_T0071901.1 MGP_CASTEiJ_G0028661.1 mouse_genomes_project 5 51356653 51357561 + Smim20 protein_coding retained_intron MGP_CASTEiJ_T0099889.1 MGP_CASTEiJ_G0036802.1 mouse_genomes_project 5 71945532 71945618 - Gm24776 snRNA snRNA MGP_CASTEiJ_T0001636.1 MGP_CASTEiJ_G0001559.1 mouse_genomes_project 5 73514314 73515909 - TEC TEC MGP_CASTEiJ_T0008195.1 MGP_CASTEiJ_G0006662.1 mouse_genomes_project 5 131835576 131836736 + Gm43001 lincRNA lincRNA MGP_CASTEiJ_T0008196.1 MGP_CASTEiJ_G0006662.1 mouse_genomes_project 5 131836134 131836647 + Gm43001 lincRNA lincRNA MGP_CASTEiJ_T0014396.1 MGP_CASTEiJ_G0012559.1 mouse_genomes_project 5 21323940 21324338 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004686.1 MGP_CASTEiJ_G0004048.1 mouse_genomes_project 5 124605177 124608542 + Gm43301 antisense antisense MGP_CASTEiJ_T0001760.1 MGP_CASTEiJ_G0001683.1 mouse_genomes_project 5 126448806 126450119 - TEC TEC MGP_CASTEiJ_T0014525.1 MGP_CASTEiJ_G0012688.1 mouse_genomes_project 5 75680570 75681644 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014501.1 MGP_CASTEiJ_G0012664.1 mouse_genomes_project 5 62744799 62745619 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098958.1 MGP_CASTEiJ_G0035882.1 mouse_genomes_project 5 27595055 27595500 + Gm43755 sense_intronic sense_intronic MGP_CASTEiJ_T0076095.1 MGP_CASTEiJ_G0029482.1 mouse_genomes_project 5 151250114 151252150 + MGP_CASTEiJ_P0076095 Polr1d protein_coding protein_coding MGP_CASTEiJ_T0076096.1 MGP_CASTEiJ_G0029482.1 mouse_genomes_project 5 151250410 151285131 + MGP_CASTEiJ_P0076096 Polr1d protein_coding protein_coding MGP_CASTEiJ_T0076097.1 MGP_CASTEiJ_G0029482.1 mouse_genomes_project 5 151250612 151285367 + MGP_CASTEiJ_P0076097 Polr1d protein_coding protein_coding MGP_CASTEiJ_T0076098.1 MGP_CASTEiJ_G0029482.1 mouse_genomes_project 5 151250628 151285344 + MGP_CASTEiJ_P0076098 Polr1d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076099.1 MGP_CASTEiJ_G0029482.1 mouse_genomes_project 5 151274933 151284641 + Polr1d protein_coding retained_intron MGP_CASTEiJ_T0076100.1 MGP_CASTEiJ_G0029482.1 mouse_genomes_project 5 151279151 151284757 + Polr1d protein_coding processed_transcript MGP_CASTEiJ_T0008203.1 MGP_CASTEiJ_G0006669.1 mouse_genomes_project 5 138530393 138549059 - Gm43091 lincRNA lincRNA MGP_CASTEiJ_T0074883.1 MGP_CASTEiJ_G0029246.1 mouse_genomes_project 5 132687164 132734820 + MGP_CASTEiJ_P0074883 Rabgef1 protein_coding protein_coding MGP_CASTEiJ_T0074884.1 MGP_CASTEiJ_G0029246.1 mouse_genomes_project 5 132687190 132730888 + MGP_CASTEiJ_P0074884 Rabgef1 protein_coding protein_coding MGP_CASTEiJ_T0074885.1 MGP_CASTEiJ_G0029246.1 mouse_genomes_project 5 132702444 132729198 + MGP_CASTEiJ_P0074885 Rabgef1 protein_coding protein_coding MGP_CASTEiJ_T0074886.1 MGP_CASTEiJ_G0029246.1 mouse_genomes_project 5 132702444 132734815 + MGP_CASTEiJ_P0074886 Rabgef1 protein_coding protein_coding MGP_CASTEiJ_T0074887.1 MGP_CASTEiJ_G0029246.1 mouse_genomes_project 5 132702491 132726359 + Rabgef1 protein_coding processed_transcript MGP_CASTEiJ_T0074888.1 MGP_CASTEiJ_G0029246.1 mouse_genomes_project 5 132702503 132706316 + Rabgef1 protein_coding retained_intron MGP_CASTEiJ_T0074889.1 MGP_CASTEiJ_G0029246.1 mouse_genomes_project 5 132726321 132731435 + Rabgef1 protein_coding retained_intron MGP_CASTEiJ_T0074890.1 MGP_CASTEiJ_G0029246.1 mouse_genomes_project 5 132731842 132733443 + Rabgef1 protein_coding retained_intron MGP_CASTEiJ_T0074891.1 MGP_CASTEiJ_G0029246.1 mouse_genomes_project 5 132733633 132734519 + MGP_CASTEiJ_P0074891 Rabgef1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072765.1 MGP_CASTEiJ_G0028840.1 mouse_genomes_project 5 91002166 91004041 + MGP_CASTEiJ_P0072765 Cxcl1 protein_coding protein_coding MGP_CASTEiJ_T0072766.1 MGP_CASTEiJ_G0028840.1 mouse_genomes_project 5 91002168 91004039 + Cxcl1 protein_coding retained_intron MGP_CASTEiJ_T0008014.1 MGP_CASTEiJ_G0006548.1 mouse_genomes_project 5 98872858 99011577 - Gm43251 lincRNA lincRNA MGP_CASTEiJ_T0001381.1 MGP_CASTEiJ_G0001310.1 mouse_genomes_project 5 647478 652248 - TEC TEC MGP_CASTEiJ_T0073378.1 MGP_CASTEiJ_G0028974.1 mouse_genomes_project 5 109344968 109373437 + MGP_CASTEiJ_P0073378 Idua protein_coding protein_coding MGP_CASTEiJ_T0073379.1 MGP_CASTEiJ_G0028974.1 mouse_genomes_project 5 109356292 109373442 + MGP_CASTEiJ_P0073379 Idua protein_coding protein_coding MGP_CASTEiJ_T0073380.1 MGP_CASTEiJ_G0028974.1 mouse_genomes_project 5 109356292 109373437 + MGP_CASTEiJ_P0073380 Idua protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073381.1 MGP_CASTEiJ_G0028974.1 mouse_genomes_project 5 109356481 109370046 + Idua protein_coding retained_intron MGP_CASTEiJ_T0073382.1 MGP_CASTEiJ_G0028974.1 mouse_genomes_project 5 109356497 109373437 + MGP_CASTEiJ_P0073382 Idua protein_coding protein_coding MGP_CASTEiJ_T0073383.1 MGP_CASTEiJ_G0028974.1 mouse_genomes_project 5 109356533 109373284 + MGP_CASTEiJ_P0073383 Idua protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073384.1 MGP_CASTEiJ_G0028974.1 mouse_genomes_project 5 109356645 109368543 + Idua protein_coding processed_transcript MGP_CASTEiJ_T0001805.1 MGP_CASTEiJ_G0001727.1 mouse_genomes_project 5 135183587 135185750 - TEC TEC MGP_CASTEiJ_T0008127.1 MGP_CASTEiJ_G0006621.1 mouse_genomes_project 5 120449070 120450718 - Gm43782 lincRNA lincRNA MGP_CASTEiJ_T0072907.1 MGP_CASTEiJ_G0028870.1 mouse_genomes_project 5 93495539 93504814 + MGP_CASTEiJ_P0072907 Ccng2 protein_coding protein_coding MGP_CASTEiJ_T0072908.1 MGP_CASTEiJ_G0028870.1 mouse_genomes_project 5 93495871 93496739 + Ccng2 protein_coding processed_transcript MGP_CASTEiJ_T0072909.1 MGP_CASTEiJ_G0028870.1 mouse_genomes_project 5 93495883 93498000 + Ccng2 protein_coding processed_transcript MGP_CASTEiJ_T0072910.1 MGP_CASTEiJ_G0028870.1 mouse_genomes_project 5 93495921 93504808 + Ccng2 protein_coding retained_intron MGP_CASTEiJ_T0072911.1 MGP_CASTEiJ_G0028870.1 mouse_genomes_project 5 93496596 93504807 + MGP_CASTEiJ_P0072911 Ccng2 protein_coding protein_coding MGP_CASTEiJ_T0072912.1 MGP_CASTEiJ_G0028870.1 mouse_genomes_project 5 93496991 93502063 + Ccng2 protein_coding retained_intron MGP_CASTEiJ_T0072681.1 MGP_CASTEiJ_G0028817.1 mouse_genomes_project 5 88593849 88603893 - Jchain protein_coding retained_intron MGP_CASTEiJ_T0072682.1 MGP_CASTEiJ_G0028817.1 mouse_genomes_project 5 88594551 88606074 - MGP_CASTEiJ_P0072682 Jchain protein_coding protein_coding MGP_CASTEiJ_T0008118.1 MGP_CASTEiJ_G0006614.1 mouse_genomes_project 5 117665689 117671277 + B230112J18Rik lincRNA lincRNA MGP_CASTEiJ_T0001556.1 MGP_CASTEiJ_G0001481.1 mouse_genomes_project 5 56263793 56264831 + TEC TEC MGP_CASTEiJ_T0001823.1 MGP_CASTEiJ_G0001744.1 mouse_genomes_project 5 142015133 142015911 + TEC TEC MGP_CASTEiJ_T0007957.1 MGP_CASTEiJ_G0006502.1 mouse_genomes_project 5 72267130 72286115 - 1700025M24Rik lincRNA lincRNA MGP_CASTEiJ_T0007958.1 MGP_CASTEiJ_G0006502.1 mouse_genomes_project 5 72267130 72286127 - 1700025M24Rik lincRNA lincRNA MGP_CASTEiJ_T0007959.1 MGP_CASTEiJ_G0006502.1 mouse_genomes_project 5 72267148 72286121 - 1700025M24Rik lincRNA lincRNA MGP_CASTEiJ_T0071513.1 MGP_CASTEiJ_G0028597.1 mouse_genomes_project 5 34077463 34087343 - MGP_CASTEiJ_P0071513 Tada2b protein_coding protein_coding MGP_CASTEiJ_T0004555.1 MGP_CASTEiJ_G0003951.1 mouse_genomes_project 5 41956529 41973554 + Gm42984 antisense antisense MGP_CASTEiJ_T0075453.1 MGP_CASTEiJ_G0029343.1 mouse_genomes_project 5 140691307 140693807 - MGP_CASTEiJ_P0075453 Irs3 protein_coding protein_coding MGP_CASTEiJ_T0075454.1 MGP_CASTEiJ_G0029343.1 mouse_genomes_project 5 140691308 140693984 - MGP_CASTEiJ_P0075454 Irs3 protein_coding protein_coding MGP_CASTEiJ_T0073248.1 MGP_CASTEiJ_G0028949.1 mouse_genomes_project 5 108053347 108056872 + MGP_CASTEiJ_P0073248 Lpcat2b protein_coding protein_coding MGP_CASTEiJ_T0073361.1 MGP_CASTEiJ_G0028972.1 mouse_genomes_project 5 109311770 109328685 + MGP_CASTEiJ_P0073361 Tmem175 protein_coding protein_coding MGP_CASTEiJ_T0073362.1 MGP_CASTEiJ_G0028972.1 mouse_genomes_project 5 109311832 109333430 + MGP_CASTEiJ_P0073362 Tmem175 protein_coding protein_coding MGP_CASTEiJ_T0073363.1 MGP_CASTEiJ_G0028972.1 mouse_genomes_project 5 109311999 109331906 + MGP_CASTEiJ_P0073363 Tmem175 protein_coding protein_coding MGP_CASTEiJ_T0073364.1 MGP_CASTEiJ_G0028972.1 mouse_genomes_project 5 109312006 109331314 + MGP_CASTEiJ_P0073364 Tmem175 protein_coding protein_coding MGP_CASTEiJ_T0073365.1 MGP_CASTEiJ_G0028972.1 mouse_genomes_project 5 109326335 109327851 + Tmem175 protein_coding retained_intron MGP_CASTEiJ_T0073366.1 MGP_CASTEiJ_G0028972.1 mouse_genomes_project 5 109328979 109329763 + Tmem175 protein_coding processed_transcript MGP_CASTEiJ_T0007994.1 MGP_CASTEiJ_G0006531.1 mouse_genomes_project 5 91036121 91038291 + lincRNA lincRNA MGP_CASTEiJ_T0075054.1 MGP_CASTEiJ_G0029269.1 mouse_genomes_project 5 137777523 137787234 + MGP_CASTEiJ_P0075054 Wbscr27 protein_coding protein_coding MGP_CASTEiJ_T0075055.1 MGP_CASTEiJ_G0029269.1 mouse_genomes_project 5 137777528 137786310 + MGP_CASTEiJ_P0075055 Wbscr27 protein_coding protein_coding MGP_CASTEiJ_T0075056.1 MGP_CASTEiJ_G0029269.1 mouse_genomes_project 5 137777528 137786310 + MGP_CASTEiJ_P0075056 Wbscr27 protein_coding protein_coding MGP_CASTEiJ_T0075057.1 MGP_CASTEiJ_G0029269.1 mouse_genomes_project 5 137777540 137786310 + MGP_CASTEiJ_P0075057 Wbscr27 protein_coding protein_coding MGP_CASTEiJ_T0075058.1 MGP_CASTEiJ_G0029269.1 mouse_genomes_project 5 137777547 137785776 + MGP_CASTEiJ_P0075058 Wbscr27 protein_coding protein_coding MGP_CASTEiJ_T0075059.1 MGP_CASTEiJ_G0029269.1 mouse_genomes_project 5 137777561 137779610 + MGP_CASTEiJ_P0075059 Wbscr27 protein_coding protein_coding MGP_CASTEiJ_T0075060.1 MGP_CASTEiJ_G0029269.1 mouse_genomes_project 5 137777679 137785215 + MGP_CASTEiJ_P0075060 Wbscr27 protein_coding protein_coding MGP_CASTEiJ_T0075061.1 MGP_CASTEiJ_G0029269.1 mouse_genomes_project 5 137777939 137782515 + Wbscr27 protein_coding processed_transcript MGP_CASTEiJ_T0075062.1 MGP_CASTEiJ_G0029269.1 mouse_genomes_project 5 137785042 137785806 + MGP_CASTEiJ_P0075062 Wbscr27 protein_coding protein_coding MGP_CASTEiJ_T0072274.1 MGP_CASTEiJ_G0028727.1 mouse_genomes_project 5 71711667 71833276 - MGP_CASTEiJ_P0072274 Tec protein_coding protein_coding MGP_CASTEiJ_T0072275.1 MGP_CASTEiJ_G0028727.1 mouse_genomes_project 5 71711674 71833291 - MGP_CASTEiJ_P0072275 Tec protein_coding protein_coding MGP_CASTEiJ_T0072276.1 MGP_CASTEiJ_G0028727.1 mouse_genomes_project 5 71711685 71833228 - MGP_CASTEiJ_P0072276 Tec protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072277.1 MGP_CASTEiJ_G0028727.1 mouse_genomes_project 5 71711689 71833315 - MGP_CASTEiJ_P0072277 Tec protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072278.1 MGP_CASTEiJ_G0028727.1 mouse_genomes_project 5 71711689 71742831 - MGP_CASTEiJ_P0072278 Tec protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072279.1 MGP_CASTEiJ_G0028727.1 mouse_genomes_project 5 71711689 71833278 - MGP_CASTEiJ_P0072279 Tec protein_coding protein_coding MGP_CASTEiJ_T0072280.1 MGP_CASTEiJ_G0028727.1 mouse_genomes_project 5 71730288 71833281 - MGP_CASTEiJ_P0072280 Tec protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072281.1 MGP_CASTEiJ_G0028727.1 mouse_genomes_project 5 71783788 71833275 - Tec protein_coding retained_intron MGP_CASTEiJ_T0072282.1 MGP_CASTEiJ_G0028727.1 mouse_genomes_project 5 71784092 71806707 - MGP_CASTEiJ_P0072282 Tec protein_coding protein_coding MGP_CASTEiJ_T0010407.1 MGP_CASTEiJ_G0008595.1 mouse_genomes_project 5 115885390 115885454 + Mir7028 miRNA miRNA MGP_CASTEiJ_T0099876.1 MGP_CASTEiJ_G0036789.1 mouse_genomes_project 5 36396532 36396639 - Gm22779 snRNA snRNA MGP_CASTEiJ_T0001787.1 MGP_CASTEiJ_G0001709.1 mouse_genomes_project 5 134247402 134248714 - TEC TEC MGP_CASTEiJ_T0004737.1 MGP_CASTEiJ_G0004083.1 mouse_genomes_project 5 142311137 142318720 + 6330403L08Rik antisense antisense MGP_CASTEiJ_T0004738.1 MGP_CASTEiJ_G0004083.1 mouse_genomes_project 5 142311137 142318719 + 6330403L08Rik antisense antisense MGP_CASTEiJ_T0072677.1 MGP_CASTEiJ_G0028815.1 mouse_genomes_project 5 88529068 88542154 + MGP_CASTEiJ_P0072677 Ambn protein_coding protein_coding MGP_CASTEiJ_T0072678.1 MGP_CASTEiJ_G0028815.1 mouse_genomes_project 5 88529088 88542503 + MGP_CASTEiJ_P0072678 Ambn protein_coding protein_coding MGP_CASTEiJ_T0004552.1 MGP_CASTEiJ_G0003949.1 mouse_genomes_project 5 41830694 41832767 + Gm16401 antisense antisense MGP_CASTEiJ_T0004553.1 MGP_CASTEiJ_G0003949.1 mouse_genomes_project 5 41830694 41832769 + Gm16401 antisense antisense MGP_CASTEiJ_T0099053.1 MGP_CASTEiJ_G0035967.1 mouse_genomes_project 5 125617230 125622865 + Gm15751 sense_overlapping sense_overlapping MGP_CASTEiJ_T0101617.1 MGP_CASTEiJ_G0038476.1 mouse_genomes_project 5 71571886 71573037 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0070928.1 MGP_CASTEiJ_G0028511.1 mouse_genomes_project 5 28198936 28212562 - MGP_CASTEiJ_P0070928 Cgref1 protein_coding protein_coding MGP_CASTEiJ_T0070929.1 MGP_CASTEiJ_G0028511.1 mouse_genomes_project 5 28201033 28212377 - Cgref1 protein_coding retained_intron MGP_CASTEiJ_T0073912.1 MGP_CASTEiJ_G0029077.1 mouse_genomes_project 5 116840565 116848143 + MGP_CASTEiJ_P0073912 protein_coding protein_coding MGP_CASTEiJ_T0014418.1 MGP_CASTEiJ_G0012581.1 mouse_genomes_project 5 26917137 26917433 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010439.1 MGP_CASTEiJ_G0008627.1 mouse_genomes_project 5 144575891 144575970 + Gm26113 miRNA miRNA MGP_CASTEiJ_T0007854.1 MGP_CASTEiJ_G0006429.1 mouse_genomes_project 5 19812744 19820733 - A930003O13Rik lincRNA lincRNA MGP_CASTEiJ_T0007855.1 MGP_CASTEiJ_G0006429.1 mouse_genomes_project 5 19813231 19816295 - A930003O13Rik lincRNA lincRNA MGP_CASTEiJ_T0007856.1 MGP_CASTEiJ_G0006429.1 mouse_genomes_project 5 19817851 19820753 - A930003O13Rik lincRNA lincRNA MGP_CASTEiJ_T0008097.1 MGP_CASTEiJ_G0006600.1 mouse_genomes_project 5 113551392 113558445 - 1700034G24Rik lincRNA lincRNA MGP_CASTEiJ_T0008098.1 MGP_CASTEiJ_G0006600.1 mouse_genomes_project 5 113551481 113558445 - 1700034G24Rik lincRNA lincRNA MGP_CASTEiJ_T0014644.1 MGP_CASTEiJ_G0012807.1 mouse_genomes_project 5 138510526 138510884 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070819.1 MGP_CASTEiJ_G0028493.1 mouse_genomes_project 5 27381567 27419104 - MGP_CASTEiJ_P0070819 Hadha protein_coding protein_coding MGP_CASTEiJ_T0070820.1 MGP_CASTEiJ_G0028493.1 mouse_genomes_project 5 27382687 27418918 - Hadha protein_coding processed_transcript MGP_CASTEiJ_T0070821.1 MGP_CASTEiJ_G0028493.1 mouse_genomes_project 5 27383158 27383563 - Hadha protein_coding processed_transcript MGP_CASTEiJ_T0070822.1 MGP_CASTEiJ_G0028493.1 mouse_genomes_project 5 27384740 27390365 - Hadha protein_coding retained_intron MGP_CASTEiJ_T0070823.1 MGP_CASTEiJ_G0028493.1 mouse_genomes_project 5 27389981 27398330 - MGP_CASTEiJ_P0070823 Hadha protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070824.1 MGP_CASTEiJ_G0028493.1 mouse_genomes_project 5 27391961 27404324 - Hadha protein_coding retained_intron MGP_CASTEiJ_T0070825.1 MGP_CASTEiJ_G0028493.1 mouse_genomes_project 5 27396521 27418904 - Hadha protein_coding retained_intron MGP_CASTEiJ_T0070826.1 MGP_CASTEiJ_G0028493.1 mouse_genomes_project 5 27410384 27412684 - Hadha protein_coding retained_intron MGP_CASTEiJ_T0070827.1 MGP_CASTEiJ_G0028493.1 mouse_genomes_project 5 27417857 27418932 - Hadha protein_coding retained_intron MGP_CASTEiJ_T0074467.1 MGP_CASTEiJ_G0029171.1 mouse_genomes_project 5 125434739 125465221 + Bcl7a protein_coding processed_transcript MGP_CASTEiJ_T0074468.1 MGP_CASTEiJ_G0029171.1 mouse_genomes_project 5 125435352 125466130 + MGP_CASTEiJ_P0074468 Bcl7a protein_coding protein_coding MGP_CASTEiJ_T0074469.1 MGP_CASTEiJ_G0029171.1 mouse_genomes_project 5 125435404 125451153 + MGP_CASTEiJ_P0074469 Bcl7a protein_coding protein_coding MGP_CASTEiJ_T0017375.1 MGP_CASTEiJ_G0014905.1 mouse_genomes_project 5 2122132 2124792 - Gm43623 processed_transcript processed_transcript MGP_CASTEiJ_T0004659.1 MGP_CASTEiJ_G0004029.1 mouse_genomes_project 5 117460349 117467292 + C330018A13Rik antisense antisense MGP_CASTEiJ_T0014486.1 MGP_CASTEiJ_G0012649.1 mouse_genomes_project 5 58382736 58382930 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071176.1 MGP_CASTEiJ_G0028546.1 mouse_genomes_project 5 30192781 30267413 - MGP_CASTEiJ_P0071176 Prr14l protein_coding protein_coding MGP_CASTEiJ_T0071177.1 MGP_CASTEiJ_G0028546.1 mouse_genomes_project 5 30197556 30200015 - Prr14l protein_coding retained_intron MGP_CASTEiJ_T0071178.1 MGP_CASTEiJ_G0028546.1 mouse_genomes_project 5 30244357 30267393 - MGP_CASTEiJ_P0071178 Prr14l protein_coding protein_coding MGP_CASTEiJ_T0074133.1 MGP_CASTEiJ_G0029122.1 mouse_genomes_project 5 122715160 122728886 + MGP_CASTEiJ_P0074133 protein_coding protein_coding MGP_CASTEiJ_T0074135.1 MGP_CASTEiJ_G0029122.1 mouse_genomes_project 5 122715178 122727161 + MGP_CASTEiJ_P0074135 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074136.1 MGP_CASTEiJ_G0029122.1 mouse_genomes_project 5 122715187 122728650 + MGP_CASTEiJ_P0074136 protein_coding protein_coding MGP_CASTEiJ_T0011264.1 MGP_CASTEiJ_G0009452.1 mouse_genomes_project 5 65096553 65096877 - Gm23183 misc_RNA misc_RNA MGP_CASTEiJ_T0076177.1 MGP_CASTEiJ_G0029497.1 mouse_genomes_project 5 153411364 153414125 - MGP_CASTEiJ_P0076177 Hmgb1 protein_coding protein_coding MGP_CASTEiJ_T0076178.1 MGP_CASTEiJ_G0029497.1 mouse_genomes_project 5 153411364 153567600 - MGP_CASTEiJ_P0076178 Hmgb1 protein_coding protein_coding MGP_CASTEiJ_T0076179.1 MGP_CASTEiJ_G0029497.1 mouse_genomes_project 5 153411678 153412973 - Hmgb1 protein_coding retained_intron MGP_CASTEiJ_T0076180.1 MGP_CASTEiJ_G0029497.1 mouse_genomes_project 5 153411926 153417188 - MGP_CASTEiJ_P0076180 Hmgb1 protein_coding protein_coding MGP_CASTEiJ_T0076181.1 MGP_CASTEiJ_G0029497.1 mouse_genomes_project 5 153412349 153413277 - MGP_CASTEiJ_P0076181 Hmgb1 protein_coding protein_coding MGP_CASTEiJ_T0076182.1 MGP_CASTEiJ_G0029497.1 mouse_genomes_project 5 153412593 153417193 - Hmgb1 protein_coding retained_intron MGP_CASTEiJ_T0076183.1 MGP_CASTEiJ_G0029497.1 mouse_genomes_project 5 153412840 153417689 - MGP_CASTEiJ_P0076183 Hmgb1 protein_coding protein_coding MGP_CASTEiJ_T0076184.1 MGP_CASTEiJ_G0029497.1 mouse_genomes_project 5 153412898 153417158 - Hmgb1 protein_coding retained_intron MGP_CASTEiJ_T0101120.1 MGP_CASTEiJ_G0038033.1 mouse_genomes_project 5 64450917 64451111 + Gm24346 snoRNA snoRNA MGP_CASTEiJ_T0073008.1 MGP_CASTEiJ_G0028895.1 mouse_genomes_project 5 100281113 100298549 - Sec31a protein_coding retained_intron MGP_CASTEiJ_T0073009.1 MGP_CASTEiJ_G0028895.1 mouse_genomes_project 5 100281113 100337708 - MGP_CASTEiJ_P0073009 Sec31a protein_coding protein_coding MGP_CASTEiJ_T0073010.1 MGP_CASTEiJ_G0028895.1 mouse_genomes_project 5 100281114 100292897 - MGP_CASTEiJ_P0073010 Sec31a protein_coding protein_coding MGP_CASTEiJ_T0073011.1 MGP_CASTEiJ_G0028895.1 mouse_genomes_project 5 100281118 100337649 - MGP_CASTEiJ_P0073011 Sec31a protein_coding protein_coding MGP_CASTEiJ_T0073012.1 MGP_CASTEiJ_G0028895.1 mouse_genomes_project 5 100281472 100315565 - MGP_CASTEiJ_P0073012 Sec31a protein_coding protein_coding MGP_CASTEiJ_T0073013.1 MGP_CASTEiJ_G0028895.1 mouse_genomes_project 5 100281610 100283733 - Sec31a protein_coding retained_intron MGP_CASTEiJ_T0073014.1 MGP_CASTEiJ_G0028895.1 mouse_genomes_project 5 100281675 100302463 - MGP_CASTEiJ_P0073014 Sec31a protein_coding protein_coding MGP_CASTEiJ_T0073015.1 MGP_CASTEiJ_G0028895.1 mouse_genomes_project 5 100285220 100298635 - MGP_CASTEiJ_P0073015 Sec31a protein_coding protein_coding MGP_CASTEiJ_T0073016.1 MGP_CASTEiJ_G0028895.1 mouse_genomes_project 5 100302494 100312271 - MGP_CASTEiJ_P0073016 Sec31a protein_coding protein_coding MGP_CASTEiJ_T0073017.1 MGP_CASTEiJ_G0028895.1 mouse_genomes_project 5 100321088 100325215 - Sec31a protein_coding processed_transcript MGP_CASTEiJ_T0073018.1 MGP_CASTEiJ_G0028895.1 mouse_genomes_project 5 100327322 100329261 - Sec31a protein_coding retained_intron MGP_CASTEiJ_T0073019.1 MGP_CASTEiJ_G0028895.1 mouse_genomes_project 5 100335058 100337640 - Sec31a protein_coding retained_intron MGP_CASTEiJ_T0075386.1 MGP_CASTEiJ_G0029333.1 mouse_genomes_project 5 140546569 140564527 + MGP_CASTEiJ_P0075386 protein_coding unknown_likely_coding MGP_CASTEiJ_T0075387.1 MGP_CASTEiJ_G0029333.1 mouse_genomes_project 5 140555149 140556976 + MGP_CASTEiJ_P0075387 protein_coding protein_coding MGP_CASTEiJ_T0004535.1 MGP_CASTEiJ_G0003936.1 mouse_genomes_project 5 32139611 32141352 + Gm15522 antisense antisense MGP_CASTEiJ_T0001540.1 MGP_CASTEiJ_G0001465.1 mouse_genomes_project 5 52018310 52022363 + TEC TEC MGP_CASTEiJ_T0001709.1 MGP_CASTEiJ_G0001632.1 mouse_genomes_project 5 114987335 114991870 - TEC TEC MGP_CASTEiJ_T0004605.1 MGP_CASTEiJ_G0003993.1 mouse_genomes_project 5 96448071 96452077 - Gm42604 antisense antisense MGP_CASTEiJ_T0074856.1 MGP_CASTEiJ_G0029240.1 mouse_genomes_project 5 132435763 132479855 + MGP_CASTEiJ_P0074856 protein_coding protein_coding MGP_CASTEiJ_T0074857.1 MGP_CASTEiJ_G0029240.1 mouse_genomes_project 5 132435828 132475345 + MGP_CASTEiJ_P0074857 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0014618.1 MGP_CASTEiJ_G0012781.1 mouse_genomes_project 5 116256686 116257039 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007997.1 MGP_CASTEiJ_G0006534.1 mouse_genomes_project 5 91901725 91902752 - 1700063O14Rik lincRNA lincRNA MGP_CASTEiJ_T0073257.1 MGP_CASTEiJ_G0028952.1 mouse_genomes_project 5 108136173 108180135 + MGP_CASTEiJ_P0073257 protein_coding protein_coding MGP_CASTEiJ_T0075507.1 MGP_CASTEiJ_G0029356.1 mouse_genomes_project 5 141212392 141229034 - MGP_CASTEiJ_P0075507 Zfp113 protein_coding protein_coding MGP_CASTEiJ_T0075508.1 MGP_CASTEiJ_G0029356.1 mouse_genomes_project 5 141219237 141226117 - MGP_CASTEiJ_P0075508 Zfp113 protein_coding protein_coding MGP_CASTEiJ_T0075509.1 MGP_CASTEiJ_G0029356.1 mouse_genomes_project 5 141223746 141228990 - Zfp113 protein_coding retained_intron MGP_CASTEiJ_T0075510.1 MGP_CASTEiJ_G0029356.1 mouse_genomes_project 5 141224152 141228994 - MGP_CASTEiJ_P0075510 Zfp113 protein_coding protein_coding MGP_CASTEiJ_T0001480.1 MGP_CASTEiJ_G0001406.1 mouse_genomes_project 5 42274026 42274765 - TEC TEC MGP_CASTEiJ_T0014347.1 MGP_CASTEiJ_G0012510.1 mouse_genomes_project 5 3370941 3371296 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008162.1 MGP_CASTEiJ_G0006645.1 mouse_genomes_project 5 127548616 127560207 + Gm42485 lincRNA lincRNA MGP_CASTEiJ_T0001498.1 MGP_CASTEiJ_G0001424.1 mouse_genomes_project 5 46187290 46188670 + TEC TEC MGP_CASTEiJ_T0004503.1 MGP_CASTEiJ_G0003910.1 mouse_genomes_project 5 11745523 11765415 - Gm26918 antisense antisense MGP_CASTEiJ_T0076101.1 MGP_CASTEiJ_G0029483.1 mouse_genomes_project 5 151373197 151375474 + MGP_CASTEiJ_P0076101 Gsx1 protein_coding protein_coding MGP_CASTEiJ_T0001738.1 MGP_CASTEiJ_G0001661.1 mouse_genomes_project 5 123294352 123296213 + TEC TEC MGP_CASTEiJ_T0074276.1 MGP_CASTEiJ_G0029144.1 mouse_genomes_project 5 124103918 124139285 - MGP_CASTEiJ_P0074276 Ccdc63 protein_coding protein_coding MGP_CASTEiJ_T0074277.1 MGP_CASTEiJ_G0029144.1 mouse_genomes_project 5 124103948 124107009 - Ccdc63 protein_coding retained_intron MGP_CASTEiJ_T0074278.1 MGP_CASTEiJ_G0029144.1 mouse_genomes_project 5 124103963 124136044 - MGP_CASTEiJ_P0074278 Ccdc63 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074279.1 MGP_CASTEiJ_G0029144.1 mouse_genomes_project 5 124123964 124131723 - MGP_CASTEiJ_P0074279 Ccdc63 protein_coding protein_coding MGP_CASTEiJ_T0074280.1 MGP_CASTEiJ_G0029144.1 mouse_genomes_project 5 124129617 124131723 - MGP_CASTEiJ_P0074280 Ccdc63 protein_coding protein_coding MGP_CASTEiJ_T0074281.1 MGP_CASTEiJ_G0029144.1 mouse_genomes_project 5 124135665 124140184 - Ccdc63 protein_coding retained_intron MGP_CASTEiJ_T0074282.1 MGP_CASTEiJ_G0029144.1 mouse_genomes_project 5 124137340 124144624 - Ccdc63 protein_coding retained_intron MGP_CASTEiJ_T0074858.1 MGP_CASTEiJ_G0029241.1 mouse_genomes_project 5 132482176 132497611 - MGP_CASTEiJ_P0074858 Gusb protein_coding protein_coding MGP_CASTEiJ_T0074859.1 MGP_CASTEiJ_G0029241.1 mouse_genomes_project 5 132482190 132497390 - MGP_CASTEiJ_P0074859 Gusb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074860.1 MGP_CASTEiJ_G0029241.1 mouse_genomes_project 5 132482748 132483810 - Gusb protein_coding retained_intron MGP_CASTEiJ_T0074861.1 MGP_CASTEiJ_G0029241.1 mouse_genomes_project 5 132493210 132497427 - MGP_CASTEiJ_P0074861 Gusb protein_coding protein_coding MGP_CASTEiJ_T0074862.1 MGP_CASTEiJ_G0029241.1 mouse_genomes_project 5 132494158 132497443 - MGP_CASTEiJ_P0074862 Gusb protein_coding protein_coding MGP_CASTEiJ_T0074863.1 MGP_CASTEiJ_G0029241.1 mouse_genomes_project 5 132494181 132497527 - Gusb protein_coding retained_intron MGP_CASTEiJ_T0004584.1 MGP_CASTEiJ_G0003975.1 mouse_genomes_project 5 72141469 72142341 + 1700071G01Rik antisense antisense MGP_CASTEiJ_T0070514.1 MGP_CASTEiJ_G0028434.1 mouse_genomes_project 5 18959828 19433537 - MGP_CASTEiJ_P0070514 Reln protein_coding protein_coding MGP_CASTEiJ_T0070515.1 MGP_CASTEiJ_G0028434.1 mouse_genomes_project 5 18960272 18974746 - Reln protein_coding processed_transcript MGP_CASTEiJ_T0070516.1 MGP_CASTEiJ_G0028434.1 mouse_genomes_project 5 18960627 19433525 - MGP_CASTEiJ_P0070516 Reln protein_coding protein_coding MGP_CASTEiJ_T0070517.1 MGP_CASTEiJ_G0028434.1 mouse_genomes_project 5 18968993 18972477 - Reln protein_coding retained_intron MGP_CASTEiJ_T0070518.1 MGP_CASTEiJ_G0028434.1 mouse_genomes_project 5 18973525 18977717 - Reln protein_coding processed_transcript MGP_CASTEiJ_T0070519.1 MGP_CASTEiJ_G0028434.1 mouse_genomes_project 5 18974310 18974666 - Reln protein_coding retained_intron MGP_CASTEiJ_T0070520.1 MGP_CASTEiJ_G0028434.1 mouse_genomes_project 5 18977394 19017774 - Reln protein_coding retained_intron MGP_CASTEiJ_T0070521.1 MGP_CASTEiJ_G0028434.1 mouse_genomes_project 5 19061081 19094809 - Reln protein_coding retained_intron MGP_CASTEiJ_T0070522.1 MGP_CASTEiJ_G0028434.1 mouse_genomes_project 5 19087582 19433525 - Reln protein_coding retained_intron MGP_CASTEiJ_T0070523.1 MGP_CASTEiJ_G0028434.1 mouse_genomes_project 5 19134318 19135554 - Reln protein_coding retained_intron MGP_CASTEiJ_T0070524.1 MGP_CASTEiJ_G0028434.1 mouse_genomes_project 5 19149533 19223897 - MGP_CASTEiJ_P0070524 Reln protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070525.1 MGP_CASTEiJ_G0028434.1 mouse_genomes_project 5 19217351 19433525 - Reln protein_coding retained_intron MGP_CASTEiJ_T0070526.1 MGP_CASTEiJ_G0028434.1 mouse_genomes_project 5 19261450 19433525 - Reln protein_coding retained_intron MGP_CASTEiJ_T0070527.1 MGP_CASTEiJ_G0028434.1 mouse_genomes_project 5 19306229 19433525 - Reln protein_coding retained_intron MGP_CASTEiJ_T0070528.1 MGP_CASTEiJ_G0028434.1 mouse_genomes_project 5 19430904 19433537 - Reln protein_coding processed_transcript MGP_CASTEiJ_T0072676.1 MGP_CASTEiJ_G0028814.1 mouse_genomes_project 5 88461454 88472143 + MGP_CASTEiJ_P0072676 Amtn protein_coding protein_coding MGP_CASTEiJ_T0014668.1 MGP_CASTEiJ_G0012831.1 mouse_genomes_project 5 146841021 146841403 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010373.1 MGP_CASTEiJ_G0008561.1 mouse_genomes_project 5 31376863 31376925 - Mir7024 miRNA miRNA MGP_CASTEiJ_T0070709.1 MGP_CASTEiJ_G0028469.1 mouse_genomes_project 5 22417799 22418105 - MGP_CASTEiJ_P0070709 E130116L18Rik protein_coding protein_coding MGP_CASTEiJ_T0071689.1 MGP_CASTEiJ_G0028628.1 mouse_genomes_project 5 39802729 39943051 + MGP_CASTEiJ_P0071689 Gm16223 protein_coding protein_coding MGP_CASTEiJ_T0008235.1 MGP_CASTEiJ_G0006695.1 mouse_genomes_project 5 152215417 152222045 - Gm15721 lincRNA lincRNA MGP_CASTEiJ_T0010387.1 MGP_CASTEiJ_G0008575.1 mouse_genomes_project 5 65867736 65867850 - Gm23841 miRNA miRNA MGP_CASTEiJ_T0070342.1 MGP_CASTEiJ_G0028401.1 mouse_genomes_project 5 5869200 5945922 + MGP_CASTEiJ_P0070342 Abcb4 protein_coding protein_coding MGP_CASTEiJ_T0070343.1 MGP_CASTEiJ_G0028401.1 mouse_genomes_project 5 5869204 5879791 + Abcb4 protein_coding retained_intron MGP_CASTEiJ_T0070344.1 MGP_CASTEiJ_G0028401.1 mouse_genomes_project 5 5869432 5923364 + MGP_CASTEiJ_P0070344 Abcb4 protein_coding protein_coding MGP_CASTEiJ_T0070345.1 MGP_CASTEiJ_G0028401.1 mouse_genomes_project 5 5908641 5912961 + Abcb4 protein_coding retained_intron MGP_CASTEiJ_T0070346.1 MGP_CASTEiJ_G0028401.1 mouse_genomes_project 5 5945247 5945927 + Abcb4 protein_coding retained_intron MGP_CASTEiJ_T0099899.1 MGP_CASTEiJ_G0036812.1 mouse_genomes_project 5 92487492 92487611 + Gm23031 snRNA snRNA MGP_CASTEiJ_T0073048.1 MGP_CASTEiJ_G0028901.1 mouse_genomes_project 5 100711320 100748885 - MGP_CASTEiJ_P0073048 Helq protein_coding protein_coding MGP_CASTEiJ_T0073049.1 MGP_CASTEiJ_G0028901.1 mouse_genomes_project 5 100711326 100714613 - Helq protein_coding retained_intron MGP_CASTEiJ_T0073050.1 MGP_CASTEiJ_G0028901.1 mouse_genomes_project 5 100711622 100748755 - MGP_CASTEiJ_P0073050 Helq protein_coding protein_coding MGP_CASTEiJ_T0073051.1 MGP_CASTEiJ_G0028901.1 mouse_genomes_project 5 100711631 100715984 - Helq protein_coding retained_intron MGP_CASTEiJ_T0073052.1 MGP_CASTEiJ_G0028901.1 mouse_genomes_project 5 100715907 100723231 - MGP_CASTEiJ_P0073052 Helq protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073053.1 MGP_CASTEiJ_G0028901.1 mouse_genomes_project 5 100720728 100723315 - Helq protein_coding retained_intron MGP_CASTEiJ_T0073054.1 MGP_CASTEiJ_G0028901.1 mouse_genomes_project 5 100727675 100732251 - Helq protein_coding retained_intron MGP_CASTEiJ_T0073055.1 MGP_CASTEiJ_G0028901.1 mouse_genomes_project 5 100732349 100743045 - Helq protein_coding processed_transcript MGP_CASTEiJ_T0073056.1 MGP_CASTEiJ_G0028901.1 mouse_genomes_project 5 100732430 100748864 - MGP_CASTEiJ_P0073056 Helq protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073057.1 MGP_CASTEiJ_G0028901.1 mouse_genomes_project 5 100742091 100743371 - Helq protein_coding retained_intron MGP_CASTEiJ_T0001387.1 MGP_CASTEiJ_G0001316.1 mouse_genomes_project 5 5637243 5640858 + TEC TEC MGP_CASTEiJ_T0004532.1 MGP_CASTEiJ_G0003933.1 mouse_genomes_project 5 31581068 31599471 + 4930557J02Rik antisense antisense MGP_CASTEiJ_T0075583.1 MGP_CASTEiJ_G0029372.1 mouse_genomes_project 5 141903213 141920063 - MGP_CASTEiJ_P0075583 Zfp68 protein_coding protein_coding MGP_CASTEiJ_T0075584.1 MGP_CASTEiJ_G0029372.1 mouse_genomes_project 5 141904571 141920060 - MGP_CASTEiJ_P0075584 Zfp68 protein_coding protein_coding MGP_CASTEiJ_T0075585.1 MGP_CASTEiJ_G0029372.1 mouse_genomes_project 5 141905699 141906641 - Zfp68 protein_coding processed_transcript MGP_CASTEiJ_T0075586.1 MGP_CASTEiJ_G0029372.1 mouse_genomes_project 5 141905703 141920042 - MGP_CASTEiJ_P0075586 Zfp68 protein_coding protein_coding MGP_CASTEiJ_T0075587.1 MGP_CASTEiJ_G0029372.1 mouse_genomes_project 5 141912381 141919955 - MGP_CASTEiJ_P0075587 Zfp68 protein_coding protein_coding MGP_CASTEiJ_T0075588.1 MGP_CASTEiJ_G0029372.1 mouse_genomes_project 5 141916475 141920040 - Zfp68 protein_coding retained_intron MGP_CASTEiJ_T0098964.1 MGP_CASTEiJ_G0035888.1 mouse_genomes_project 5 72198150 72200648 - Gm17207 sense_intronic sense_intronic MGP_CASTEiJ_T0001639.1 MGP_CASTEiJ_G0001562.1 mouse_genomes_project 5 74277305 74277743 - TEC TEC MGP_CASTEiJ_T0072019.1 MGP_CASTEiJ_G0028685.1 mouse_genomes_project 5 64046073 64063455 + MGP_CASTEiJ_P0072019 Lias protein_coding protein_coding MGP_CASTEiJ_T0072020.1 MGP_CASTEiJ_G0028685.1 mouse_genomes_project 5 64046116 64064930 + MGP_CASTEiJ_P0072020 Lias protein_coding protein_coding MGP_CASTEiJ_T0072021.1 MGP_CASTEiJ_G0028685.1 mouse_genomes_project 5 64046120 64050422 + Lias protein_coding retained_intron MGP_CASTEiJ_T0072022.1 MGP_CASTEiJ_G0028685.1 mouse_genomes_project 5 64046140 64049862 + Lias protein_coding retained_intron MGP_CASTEiJ_T0072023.1 MGP_CASTEiJ_G0028685.1 mouse_genomes_project 5 64046141 64051922 + MGP_CASTEiJ_P0072023 Lias protein_coding protein_coding MGP_CASTEiJ_T0072024.1 MGP_CASTEiJ_G0028685.1 mouse_genomes_project 5 64051777 64054122 + Lias protein_coding retained_intron MGP_CASTEiJ_T0073140.1 MGP_CASTEiJ_G0028918.1 mouse_genomes_project 5 104156891 104164456 - MGP_CASTEiJ_P0073140 Gm17660 protein_coding protein_coding MGP_CASTEiJ_T0073141.1 MGP_CASTEiJ_G0028918.1 mouse_genomes_project 5 104156917 104164440 - MGP_CASTEiJ_P0073141 Gm17660 protein_coding protein_coding MGP_CASTEiJ_T0073142.1 MGP_CASTEiJ_G0028918.1 mouse_genomes_project 5 104158072 104164456 - MGP_CASTEiJ_P0073142 Gm17660 protein_coding protein_coding MGP_CASTEiJ_T0007867.1 MGP_CASTEiJ_G0006438.1 mouse_genomes_project 5 22876294 22877876 + Gm43972 lincRNA lincRNA MGP_CASTEiJ_T0014634.1 MGP_CASTEiJ_G0012797.1 mouse_genomes_project 5 124919921 124927697 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070576.1 MGP_CASTEiJ_G0028443.1 mouse_genomes_project 5 21005754 21015598 - Fam126a protein_coding processed_transcript MGP_CASTEiJ_T0070577.1 MGP_CASTEiJ_G0028443.1 mouse_genomes_project 5 21005755 21137521 - MGP_CASTEiJ_P0070577 Fam126a protein_coding protein_coding MGP_CASTEiJ_T0070578.1 MGP_CASTEiJ_G0028443.1 mouse_genomes_project 5 21058468 21101943 - MGP_CASTEiJ_P0070578 Fam126a protein_coding protein_coding MGP_CASTEiJ_T0070579.1 MGP_CASTEiJ_G0028443.1 mouse_genomes_project 5 21062027 21137857 - MGP_CASTEiJ_P0070579 Fam126a protein_coding protein_coding MGP_CASTEiJ_T0070580.1 MGP_CASTEiJ_G0028443.1 mouse_genomes_project 5 21083077 21086221 - Fam126a protein_coding retained_intron MGP_CASTEiJ_T0070581.1 MGP_CASTEiJ_G0028443.1 mouse_genomes_project 5 21090025 21137514 - Fam126a protein_coding processed_transcript MGP_CASTEiJ_T0004549.1 MGP_CASTEiJ_G0003947.1 mouse_genomes_project 5 41251443 41259343 - Gm15866 antisense antisense MGP_CASTEiJ_T0004550.1 MGP_CASTEiJ_G0003947.1 mouse_genomes_project 5 41258858 41307976 - Gm15866 antisense antisense MGP_CASTEiJ_T0072818.1 MGP_CASTEiJ_G0028854.1 mouse_genomes_project 5 92405192 92435127 - MGP_CASTEiJ_P0072818 Ppef2 protein_coding protein_coding MGP_CASTEiJ_T0072819.1 MGP_CASTEiJ_G0028854.1 mouse_genomes_project 5 92405201 92407501 - Ppef2 protein_coding processed_transcript MGP_CASTEiJ_T0072820.1 MGP_CASTEiJ_G0028854.1 mouse_genomes_project 5 92405486 92432019 - MGP_CASTEiJ_P0072820 Ppef2 protein_coding protein_coding MGP_CASTEiJ_T0099880.1 MGP_CASTEiJ_G0036793.1 mouse_genomes_project 5 64328137 64328211 + Gm24399 snRNA snRNA MGP_CASTEiJ_T0075704.1 MGP_CASTEiJ_G0029394.1 mouse_genomes_project 5 143192282 143210858 - MGP_CASTEiJ_P0075704 Gm26938 protein_coding protein_coding MGP_CASTEiJ_T0007930.1 MGP_CASTEiJ_G0006480.1 mouse_genomes_project 5 51041660 51057329 + Gm42746 lincRNA lincRNA MGP_CASTEiJ_T0004576.1 MGP_CASTEiJ_G0003968.1 mouse_genomes_project 5 66083832 66087641 - antisense antisense MGP_CASTEiJ_T0001772.1 MGP_CASTEiJ_G0001694.1 mouse_genomes_project 5 130917847 130919210 + TEC TEC MGP_CASTEiJ_T0007995.1 MGP_CASTEiJ_G0006532.1 mouse_genomes_project 5 91366190 91392151 - Gm19619 lincRNA lincRNA MGP_CASTEiJ_T0073003.1 MGP_CASTEiJ_G0028894.1 mouse_genomes_project 5 99970286 100055500 - MGP_CASTEiJ_P0073003 Tmem150c protein_coding protein_coding MGP_CASTEiJ_T0073004.1 MGP_CASTEiJ_G0028894.1 mouse_genomes_project 5 99976345 100055127 - Tmem150c protein_coding retained_intron MGP_CASTEiJ_T0073005.1 MGP_CASTEiJ_G0028894.1 mouse_genomes_project 5 99976346 100018500 - Tmem150c protein_coding retained_intron MGP_CASTEiJ_T0073006.1 MGP_CASTEiJ_G0028894.1 mouse_genomes_project 5 99978413 100055262 - Tmem150c protein_coding retained_intron MGP_CASTEiJ_T0073007.1 MGP_CASTEiJ_G0028894.1 mouse_genomes_project 5 99978534 100054976 - MGP_CASTEiJ_P0073007 Tmem150c protein_coding protein_coding MGP_CASTEiJ_T0014659.1 MGP_CASTEiJ_G0012822.1 mouse_genomes_project 5 141911053 141911605 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004663.1 MGP_CASTEiJ_G0004032.1 mouse_genomes_project 5 118545122 118548625 + 9530046B11Rik antisense antisense MGP_CASTEiJ_T0098961.1 MGP_CASTEiJ_G0035885.1 mouse_genomes_project 5 41590686 41591971 + Gm16014 sense_intronic sense_intronic MGP_CASTEiJ_T0014676.1 MGP_CASTEiJ_G0012839.1 mouse_genomes_project 5 149109303 149109802 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075811.1 MGP_CASTEiJ_G0029420.1 mouse_genomes_project 5 146522933 146552242 - MGP_CASTEiJ_P0075811 Fbxl18 protein_coding protein_coding MGP_CASTEiJ_T0075812.1 MGP_CASTEiJ_G0029420.1 mouse_genomes_project 5 146527784 146528893 - Fbxl18 protein_coding retained_intron MGP_CASTEiJ_T0075813.1 MGP_CASTEiJ_G0029420.1 mouse_genomes_project 5 146527797 146552061 - MGP_CASTEiJ_P0075813 Fbxl18 protein_coding protein_coding MGP_CASTEiJ_T0075814.1 MGP_CASTEiJ_G0029420.1 mouse_genomes_project 5 146528060 146528502 - Fbxl18 protein_coding processed_transcript MGP_CASTEiJ_T0075815.1 MGP_CASTEiJ_G0029420.1 mouse_genomes_project 5 146538273 146552242 - Fbxl18 protein_coding retained_intron MGP_CASTEiJ_T0001713.1 MGP_CASTEiJ_G0001636.1 mouse_genomes_project 5 116670742 116672619 - TEC TEC MGP_CASTEiJ_T0004541.1 MGP_CASTEiJ_G0003942.1 mouse_genomes_project 5 34485930 34489225 - Ppp2r2cos antisense antisense MGP_CASTEiJ_T0004572.1 MGP_CASTEiJ_G0003965.1 mouse_genomes_project 5 65423859 65475979 - Uchl1os antisense antisense MGP_CASTEiJ_T0004573.1 MGP_CASTEiJ_G0003965.1 mouse_genomes_project 5 65455156 65475514 - Uchl1os antisense antisense MGP_CASTEiJ_T0070589.1 MGP_CASTEiJ_G0028446.1 mouse_genomes_project 5 21434805 21469071 - MGP_CASTEiJ_P0070589 Kcnh2 protein_coding protein_coding MGP_CASTEiJ_T0070590.1 MGP_CASTEiJ_G0028446.1 mouse_genomes_project 5 21434805 21444865 - MGP_CASTEiJ_P0070590 Kcnh2 protein_coding protein_coding MGP_CASTEiJ_T0070591.1 MGP_CASTEiJ_G0028446.1 mouse_genomes_project 5 21435300 21437504 - Kcnh2 protein_coding processed_transcript MGP_CASTEiJ_T0070592.1 MGP_CASTEiJ_G0028446.1 mouse_genomes_project 5 21439767 21441072 - Kcnh2 protein_coding processed_transcript MGP_CASTEiJ_T0070593.1 MGP_CASTEiJ_G0028446.1 mouse_genomes_project 5 21440730 21441802 - Kcnh2 protein_coding processed_transcript MGP_CASTEiJ_T0071302.1 MGP_CASTEiJ_G0028565.1 mouse_genomes_project 5 31462098 31472275 + MGP_CASTEiJ_P0071302 Nat8l protein_coding protein_coding MGP_CASTEiJ_T0071303.1 MGP_CASTEiJ_G0028565.1 mouse_genomes_project 5 31465877 31467152 + Nat8l protein_coding processed_transcript MGP_CASTEiJ_T0014404.1 MGP_CASTEiJ_G0012567.1 mouse_genomes_project 5 22936020 22936381 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072352.1 MGP_CASTEiJ_G0028740.1 mouse_genomes_project 5 73274954 73610753 - MGP_CASTEiJ_P0072352 Scfd2 protein_coding protein_coding MGP_CASTEiJ_T0072353.1 MGP_CASTEiJ_G0028740.1 mouse_genomes_project 5 73275217 73369868 - Scfd2 protein_coding processed_transcript MGP_CASTEiJ_T0072354.1 MGP_CASTEiJ_G0028740.1 mouse_genomes_project 5 73276184 73298065 - Scfd2 protein_coding retained_intron MGP_CASTEiJ_T0072355.1 MGP_CASTEiJ_G0028740.1 mouse_genomes_project 5 73276187 73610756 - MGP_CASTEiJ_P0072355 Scfd2 protein_coding protein_coding MGP_CASTEiJ_T0072356.1 MGP_CASTEiJ_G0028740.1 mouse_genomes_project 5 73476932 73479540 - MGP_CASTEiJ_P0072356 Scfd2 protein_coding protein_coding MGP_CASTEiJ_T0072357.1 MGP_CASTEiJ_G0028740.1 mouse_genomes_project 5 73532600 73610733 - MGP_CASTEiJ_P0072357 Scfd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072358.1 MGP_CASTEiJ_G0028740.1 mouse_genomes_project 5 73541124 73610763 - MGP_CASTEiJ_P0072358 Scfd2 protein_coding protein_coding MGP_CASTEiJ_T0072359.1 MGP_CASTEiJ_G0028740.1 mouse_genomes_project 5 73544624 73567482 - Scfd2 protein_coding retained_intron MGP_CASTEiJ_T0072360.1 MGP_CASTEiJ_G0028740.1 mouse_genomes_project 5 73591685 73610746 - Scfd2 protein_coding processed_transcript MGP_CASTEiJ_T0014670.1 MGP_CASTEiJ_G0012833.1 mouse_genomes_project 5 147176653 147177190 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014652.1 MGP_CASTEiJ_G0012815.1 mouse_genomes_project 5 140952461 140952849 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076082.1 MGP_CASTEiJ_G0029479.1 mouse_genomes_project 5 151116055 151122989 + MGP_CASTEiJ_P0076082 Gtf3a protein_coding protein_coding MGP_CASTEiJ_T0076083.1 MGP_CASTEiJ_G0029479.1 mouse_genomes_project 5 151116096 151122978 + Gtf3a protein_coding retained_intron MGP_CASTEiJ_T0076084.1 MGP_CASTEiJ_G0029479.1 mouse_genomes_project 5 151116103 151122981 + MGP_CASTEiJ_P0076084 Gtf3a protein_coding protein_coding MGP_CASTEiJ_T0076085.1 MGP_CASTEiJ_G0029479.1 mouse_genomes_project 5 151117380 151122978 + Gtf3a protein_coding retained_intron MGP_CASTEiJ_T0008272.1 MGP_CASTEiJ_G0006720.1 mouse_genomes_project 5 155361629 155409721 + Gm43299 lincRNA lincRNA MGP_CASTEiJ_T0008274.1 MGP_CASTEiJ_G0006722.1 mouse_genomes_project 5 155846328 155853190 + Gm42904 lincRNA lincRNA MGP_CASTEiJ_T0076001.1 MGP_CASTEiJ_G0029459.1 mouse_genomes_project 5 148955214 148972052 - MGP_CASTEiJ_P0076001 Pdap1 protein_coding protein_coding MGP_CASTEiJ_T0076002.1 MGP_CASTEiJ_G0029459.1 mouse_genomes_project 5 148957058 148968523 - Pdap1 protein_coding processed_transcript MGP_CASTEiJ_T0076003.1 MGP_CASTEiJ_G0029459.1 mouse_genomes_project 5 148958345 148963588 - Pdap1 protein_coding retained_intron MGP_CASTEiJ_T0076004.1 MGP_CASTEiJ_G0029459.1 mouse_genomes_project 5 148961295 148963742 - Pdap1 protein_coding retained_intron MGP_CASTEiJ_T0076005.1 MGP_CASTEiJ_G0029459.1 mouse_genomes_project 5 148968404 148971812 - Pdap1 protein_coding retained_intron MGP_CASTEiJ_T0001807.1 MGP_CASTEiJ_G0001729.1 mouse_genomes_project 5 135489615 135489903 + TEC TEC MGP_CASTEiJ_T0074604.1 MGP_CASTEiJ_G0029193.1 mouse_genomes_project 5 126402531 126481682 - MGP_CASTEiJ_P0074604 Mphosph9 protein_coding protein_coding MGP_CASTEiJ_T0074605.1 MGP_CASTEiJ_G0029193.1 mouse_genomes_project 5 126404241 126481559 - MGP_CASTEiJ_P0074605 Mphosph9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074606.1 MGP_CASTEiJ_G0029193.1 mouse_genomes_project 5 126405240 126481562 - MGP_CASTEiJ_P0074606 Mphosph9 protein_coding protein_coding MGP_CASTEiJ_T0074607.1 MGP_CASTEiJ_G0029193.1 mouse_genomes_project 5 126406190 126412677 - Mphosph9 protein_coding processed_transcript MGP_CASTEiJ_T0074608.1 MGP_CASTEiJ_G0029193.1 mouse_genomes_project 5 126410563 126416971 - Mphosph9 protein_coding processed_transcript MGP_CASTEiJ_T0074609.1 MGP_CASTEiJ_G0029193.1 mouse_genomes_project 5 126412513 126414598 - Mphosph9 protein_coding processed_transcript MGP_CASTEiJ_T0074610.1 MGP_CASTEiJ_G0029193.1 mouse_genomes_project 5 126413530 126414969 - Mphosph9 protein_coding retained_intron MGP_CASTEiJ_T0074611.1 MGP_CASTEiJ_G0029193.1 mouse_genomes_project 5 126438934 126481580 - MGP_CASTEiJ_P0074611 Mphosph9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074612.1 MGP_CASTEiJ_G0029193.1 mouse_genomes_project 5 126446812 126478841 - MGP_CASTEiJ_P0074612 Mphosph9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074613.1 MGP_CASTEiJ_G0029193.1 mouse_genomes_project 5 126467743 126481682 - Mphosph9 protein_coding processed_transcript MGP_CASTEiJ_T0074614.1 MGP_CASTEiJ_G0029193.1 mouse_genomes_project 5 126467743 126481562 - Mphosph9 protein_coding processed_transcript MGP_CASTEiJ_T0071273.1 MGP_CASTEiJ_G0028561.1 mouse_genomes_project 5 31208799 31253144 - MGP_CASTEiJ_P0071273 Letm1 protein_coding protein_coding MGP_CASTEiJ_T0071274.1 MGP_CASTEiJ_G0028561.1 mouse_genomes_project 5 31211661 31223476 - Letm1 protein_coding retained_intron MGP_CASTEiJ_T0071275.1 MGP_CASTEiJ_G0028561.1 mouse_genomes_project 5 31232043 31248942 - MGP_CASTEiJ_P0071275 Letm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071276.1 MGP_CASTEiJ_G0028561.1 mouse_genomes_project 5 31239694 31253041 - Letm1 protein_coding processed_transcript MGP_CASTEiJ_T0071277.1 MGP_CASTEiJ_G0028561.1 mouse_genomes_project 5 31239893 31240787 - Letm1 protein_coding processed_transcript MGP_CASTEiJ_T0071278.1 MGP_CASTEiJ_G0028561.1 mouse_genomes_project 5 31246793 31253064 - MGP_CASTEiJ_P0071278 Letm1 protein_coding protein_coding MGP_CASTEiJ_T0010431.1 MGP_CASTEiJ_G0008619.1 mouse_genomes_project 5 141241304 141241388 - Mir25 miRNA miRNA MGP_CASTEiJ_T0070731.1 MGP_CASTEiJ_G0028474.1 mouse_genomes_project 5 23965995 23999306 + Dpp6 protein_coding processed_transcript MGP_CASTEiJ_T0070732.1 MGP_CASTEiJ_G0028474.1 mouse_genomes_project 5 23966149 24898610 + MGP_CASTEiJ_P0070732 Dpp6 protein_coding protein_coding MGP_CASTEiJ_T0070733.1 MGP_CASTEiJ_G0028474.1 mouse_genomes_project 5 23966226 24601406 + Dpp6 protein_coding retained_intron MGP_CASTEiJ_T0070734.1 MGP_CASTEiJ_G0028474.1 mouse_genomes_project 5 24055750 24899608 + MGP_CASTEiJ_P0070734 Dpp6 protein_coding protein_coding MGP_CASTEiJ_T0070735.1 MGP_CASTEiJ_G0028474.1 mouse_genomes_project 5 24207162 24899604 + MGP_CASTEiJ_P0070735 Dpp6 protein_coding protein_coding MGP_CASTEiJ_T0070736.1 MGP_CASTEiJ_G0028474.1 mouse_genomes_project 5 24207351 24210092 + Dpp6 protein_coding retained_intron MGP_CASTEiJ_T0070737.1 MGP_CASTEiJ_G0028474.1 mouse_genomes_project 5 24419930 24545444 + MGP_CASTEiJ_P0070737 Dpp6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070738.1 MGP_CASTEiJ_G0028474.1 mouse_genomes_project 5 24420260 24897901 + MGP_CASTEiJ_P0070738 Dpp6 protein_coding protein_coding MGP_CASTEiJ_T0070739.1 MGP_CASTEiJ_G0028474.1 mouse_genomes_project 5 24707333 24866637 + Dpp6 protein_coding retained_intron MGP_CASTEiJ_T0070740.1 MGP_CASTEiJ_G0028474.1 mouse_genomes_project 5 24788919 24897952 + MGP_CASTEiJ_P0070740 Dpp6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073843.1 MGP_CASTEiJ_G0029064.1 mouse_genomes_project 5 116384898 116410871 - MGP_CASTEiJ_P0073843 Cabp1 protein_coding protein_coding MGP_CASTEiJ_T0073844.1 MGP_CASTEiJ_G0029064.1 mouse_genomes_project 5 116384898 116402744 - MGP_CASTEiJ_P0073844 Cabp1 protein_coding protein_coding MGP_CASTEiJ_T0073845.1 MGP_CASTEiJ_G0029064.1 mouse_genomes_project 5 116384923 116397856 - Cabp1 protein_coding processed_transcript MGP_CASTEiJ_T0073846.1 MGP_CASTEiJ_G0029064.1 mouse_genomes_project 5 116385155 116402557 - MGP_CASTEiJ_P0073846 Cabp1 protein_coding protein_coding MGP_CASTEiJ_T0073847.1 MGP_CASTEiJ_G0029064.1 mouse_genomes_project 5 116385180 116402494 - MGP_CASTEiJ_P0073847 Cabp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073848.1 MGP_CASTEiJ_G0029064.1 mouse_genomes_project 5 116388957 116397693 - Cabp1 protein_coding retained_intron MGP_CASTEiJ_T0073849.1 MGP_CASTEiJ_G0029064.1 mouse_genomes_project 5 116396173 116400580 - Cabp1 protein_coding retained_intron MGP_CASTEiJ_T0014597.1 MGP_CASTEiJ_G0012760.1 mouse_genomes_project 5 108644351 108644578 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014639.1 MGP_CASTEiJ_G0012802.1 mouse_genomes_project 5 132727347 132729008 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075106.1 MGP_CASTEiJ_G0029278.1 mouse_genomes_project 5 138000932 138016789 + MGP_CASTEiJ_P0075106 Tbl2 protein_coding protein_coding MGP_CASTEiJ_T0075107.1 MGP_CASTEiJ_G0029278.1 mouse_genomes_project 5 138000961 138010871 + MGP_CASTEiJ_P0075107 Tbl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075108.1 MGP_CASTEiJ_G0029278.1 mouse_genomes_project 5 138000961 138008838 + MGP_CASTEiJ_P0075108 Tbl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075109.1 MGP_CASTEiJ_G0029278.1 mouse_genomes_project 5 138000966 138005646 + MGP_CASTEiJ_P0075109 Tbl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075110.1 MGP_CASTEiJ_G0029278.1 mouse_genomes_project 5 138003951 138008876 + MGP_CASTEiJ_P0075110 Tbl2 protein_coding protein_coding MGP_CASTEiJ_T0072767.1 MGP_CASTEiJ_G0028841.1 mouse_genomes_project 5 91016086 91017979 + MGP_CASTEiJ_P0072767 Cxcl2 protein_coding protein_coding MGP_CASTEiJ_T0072768.1 MGP_CASTEiJ_G0028841.1 mouse_genomes_project 5 91016088 91017979 + Cxcl2 protein_coding retained_intron MGP_CASTEiJ_T0072769.1 MGP_CASTEiJ_G0028841.1 mouse_genomes_project 5 91016088 91016577 + Cxcl2 protein_coding retained_intron MGP_CASTEiJ_T0072770.1 MGP_CASTEiJ_G0028841.1 mouse_genomes_project 5 91016088 91017979 + MGP_CASTEiJ_P0072770 Cxcl2 protein_coding protein_coding MGP_CASTEiJ_T0008083.1 MGP_CASTEiJ_G0006593.1 mouse_genomes_project 5 112706926 112723229 + Gm42487 lincRNA lincRNA MGP_CASTEiJ_T0008084.1 MGP_CASTEiJ_G0006593.1 mouse_genomes_project 5 112708747 112723146 + Gm42487 lincRNA lincRNA MGP_CASTEiJ_T0001591.1 MGP_CASTEiJ_G0001515.1 mouse_genomes_project 5 65091856 65093859 - TEC TEC MGP_CASTEiJ_T0072870.1 MGP_CASTEiJ_G0028862.1 mouse_genomes_project 5 92739844 92781030 + MGP_CASTEiJ_P0072870 Fam47e protein_coding protein_coding MGP_CASTEiJ_T0072871.1 MGP_CASTEiJ_G0028862.1 mouse_genomes_project 5 92739877 92780930 + MGP_CASTEiJ_P0072871 Fam47e protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072872.1 MGP_CASTEiJ_G0028862.1 mouse_genomes_project 5 92757127 92781152 + MGP_CASTEiJ_P0072872 Fam47e protein_coding protein_coding MGP_CASTEiJ_T0072873.1 MGP_CASTEiJ_G0028862.1 mouse_genomes_project 5 92757187 92781549 + MGP_CASTEiJ_P0072873 Fam47e protein_coding protein_coding MGP_CASTEiJ_T0072874.1 MGP_CASTEiJ_G0028862.1 mouse_genomes_project 5 92757193 92775821 + MGP_CASTEiJ_P0072874 Fam47e protein_coding protein_coding MGP_CASTEiJ_T0072875.1 MGP_CASTEiJ_G0028862.1 mouse_genomes_project 5 92757206 92781001 + MGP_CASTEiJ_P0072875 Fam47e protein_coding protein_coding MGP_CASTEiJ_T0073964.1 MGP_CASTEiJ_G0029084.1 mouse_genomes_project 5 117461372 117641403 - MGP_CASTEiJ_P0073964 Ccdc60 protein_coding protein_coding MGP_CASTEiJ_T0073965.1 MGP_CASTEiJ_G0029084.1 mouse_genomes_project 5 117510008 117641381 - MGP_CASTEiJ_P0073965 Ccdc60 protein_coding protein_coding MGP_CASTEiJ_T0070608.1 MGP_CASTEiJ_G0028450.1 mouse_genomes_project 5 21533480 21537920 + MGP_CASTEiJ_P0070608 Asic3 protein_coding protein_coding MGP_CASTEiJ_T0070609.1 MGP_CASTEiJ_G0028450.1 mouse_genomes_project 5 21533539 21537920 + Asic3 protein_coding retained_intron MGP_CASTEiJ_T0070610.1 MGP_CASTEiJ_G0028450.1 mouse_genomes_project 5 21533800 21537832 + MGP_CASTEiJ_P0070610 Asic3 protein_coding protein_coding MGP_CASTEiJ_T0070611.1 MGP_CASTEiJ_G0028450.1 mouse_genomes_project 5 21535826 21537920 + Asic3 protein_coding retained_intron MGP_CASTEiJ_T0070612.1 MGP_CASTEiJ_G0028450.1 mouse_genomes_project 5 21536661 21537921 + MGP_CASTEiJ_P0070612 Asic3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070749.1 MGP_CASTEiJ_G0028476.1 mouse_genomes_project 5 25033019 25045827 + MGP_CASTEiJ_P0070749 Htr5a protein_coding protein_coding MGP_CASTEiJ_T0072581.1 MGP_CASTEiJ_G0028779.1 mouse_genomes_project 5 86349974 86445318 - MGP_CASTEiJ_P0072581 Tmprss11f protein_coding protein_coding MGP_CASTEiJ_T0072582.1 MGP_CASTEiJ_G0028779.1 mouse_genomes_project 5 86388803 86445318 - Tmprss11f protein_coding processed_transcript MGP_CASTEiJ_T0072583.1 MGP_CASTEiJ_G0028779.1 mouse_genomes_project 5 86425301 86445277 - Tmprss11f protein_coding retained_intron MGP_CASTEiJ_T0001681.1 MGP_CASTEiJ_G0001604.1 mouse_genomes_project 5 105303594 105303962 - TEC TEC MGP_CASTEiJ_T0071360.1 MGP_CASTEiJ_G0028575.1 mouse_genomes_project 5 32057333 32118686 + MGP_CASTEiJ_P0071360 Add1 protein_coding protein_coding MGP_CASTEiJ_T0071361.1 MGP_CASTEiJ_G0028575.1 mouse_genomes_project 5 32057434 32089538 + MGP_CASTEiJ_P0071361 Add1 protein_coding protein_coding MGP_CASTEiJ_T0071362.1 MGP_CASTEiJ_G0028575.1 mouse_genomes_project 5 32057438 32089538 + MGP_CASTEiJ_P0071362 Add1 protein_coding protein_coding MGP_CASTEiJ_T0071363.1 MGP_CASTEiJ_G0028575.1 mouse_genomes_project 5 32057473 32085194 + Add1 protein_coding processed_transcript MGP_CASTEiJ_T0071364.1 MGP_CASTEiJ_G0028575.1 mouse_genomes_project 5 32057532 32118683 + MGP_CASTEiJ_P0071364 Add1 protein_coding protein_coding MGP_CASTEiJ_T0071365.1 MGP_CASTEiJ_G0028575.1 mouse_genomes_project 5 32057542 32118686 + MGP_CASTEiJ_P0071365 Add1 protein_coding protein_coding MGP_CASTEiJ_T0071366.1 MGP_CASTEiJ_G0028575.1 mouse_genomes_project 5 32057711 32118672 + MGP_CASTEiJ_P0071366 Add1 protein_coding protein_coding MGP_CASTEiJ_T0071367.1 MGP_CASTEiJ_G0028575.1 mouse_genomes_project 5 32079900 32082669 + Add1 protein_coding retained_intron MGP_CASTEiJ_T0071368.1 MGP_CASTEiJ_G0028575.1 mouse_genomes_project 5 32084910 32117153 + MGP_CASTEiJ_P0071368 Add1 protein_coding protein_coding MGP_CASTEiJ_T0071369.1 MGP_CASTEiJ_G0028575.1 mouse_genomes_project 5 32100592 32111653 + MGP_CASTEiJ_P0071369 Add1 protein_coding protein_coding MGP_CASTEiJ_T0071370.1 MGP_CASTEiJ_G0028575.1 mouse_genomes_project 5 32102961 32106787 + Add1 protein_coding retained_intron MGP_CASTEiJ_T0071371.1 MGP_CASTEiJ_G0028575.1 mouse_genomes_project 5 32103102 32116968 + MGP_CASTEiJ_P0071371 Add1 protein_coding protein_coding MGP_CASTEiJ_T0071372.1 MGP_CASTEiJ_G0028575.1 mouse_genomes_project 5 32105688 32118686 + MGP_CASTEiJ_P0071372 Add1 protein_coding protein_coding MGP_CASTEiJ_T0071373.1 MGP_CASTEiJ_G0028575.1 mouse_genomes_project 5 32106184 32117078 + Add1 protein_coding retained_intron MGP_CASTEiJ_T0071374.1 MGP_CASTEiJ_G0028575.1 mouse_genomes_project 5 32106306 32115074 + Add1 protein_coding retained_intron MGP_CASTEiJ_T0099909.1 MGP_CASTEiJ_G0036822.1 mouse_genomes_project 5 107916999 107917101 + Gm22557 snRNA snRNA MGP_CASTEiJ_T0004597.1 MGP_CASTEiJ_G0003986.1 mouse_genomes_project 5 87871848 87951574 - 1700066N21Rik antisense antisense MGP_CASTEiJ_T0101613.1 MGP_CASTEiJ_G0038472.1 mouse_genomes_project 5 48591969 48597010 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0074686.1 MGP_CASTEiJ_G0029206.1 mouse_genomes_project 5 126841282 126964277 + MGP_CASTEiJ_P0074686 Dnah10 protein_coding protein_coding MGP_CASTEiJ_T0074687.1 MGP_CASTEiJ_G0029206.1 mouse_genomes_project 5 126915096 126915527 + Dnah10 protein_coding processed_transcript MGP_CASTEiJ_T0074688.1 MGP_CASTEiJ_G0029206.1 mouse_genomes_project 5 126919959 126926415 + Dnah10 protein_coding processed_transcript MGP_CASTEiJ_T0074689.1 MGP_CASTEiJ_G0029206.1 mouse_genomes_project 5 126931567 126934772 + Dnah10 protein_coding retained_intron MGP_CASTEiJ_T0074690.1 MGP_CASTEiJ_G0029206.1 mouse_genomes_project 5 126935427 126964277 + Dnah10 protein_coding retained_intron MGP_CASTEiJ_T0070330.1 MGP_CASTEiJ_G0028400.1 mouse_genomes_project 5 5680654 5793675 + Abcb1b protein_coding retained_intron MGP_CASTEiJ_T0070334.1 MGP_CASTEiJ_G0028400.1 mouse_genomes_project 5 5759557 5819287 + MGP_CASTEiJ_P0070334 Abcb1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070335.1 MGP_CASTEiJ_G0028400.1 mouse_genomes_project 5 5759563 5776165 + MGP_CASTEiJ_P0070335 Abcb1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070336.1 MGP_CASTEiJ_G0028400.1 mouse_genomes_project 5 5760152 5840940 + MGP_CASTEiJ_P0070336 Abcb1b protein_coding protein_coding MGP_CASTEiJ_T0070337.1 MGP_CASTEiJ_G0028400.1 mouse_genomes_project 5 5807373 5823077 + Abcb1b protein_coding processed_transcript MGP_CASTEiJ_T0070338.1 MGP_CASTEiJ_G0028400.1 mouse_genomes_project 5 5818828 5819287 + Abcb1b protein_coding retained_intron MGP_CASTEiJ_T0070339.1 MGP_CASTEiJ_G0028400.1 mouse_genomes_project 5 5820841 5823236 + Abcb1b protein_coding retained_intron MGP_CASTEiJ_T0070340.1 MGP_CASTEiJ_G0028400.1 mouse_genomes_project 5 5821046 5840651 + MGP_CASTEiJ_P0070340 Abcb1b protein_coding protein_coding MGP_CASTEiJ_T0070341.1 MGP_CASTEiJ_G0028400.1 mouse_genomes_project 5 5821314 5824334 + Abcb1b protein_coding retained_intron MGP_CASTEiJ_T0008111.1 MGP_CASTEiJ_G0006609.1 mouse_genomes_project 5 116598317 116645781 + Gm13832 lincRNA lincRNA MGP_CASTEiJ_T0008112.1 MGP_CASTEiJ_G0006609.1 mouse_genomes_project 5 116598336 116672982 + Gm13832 lincRNA lincRNA MGP_CASTEiJ_T0008134.1 MGP_CASTEiJ_G0006628.1 mouse_genomes_project 5 121290228 121306142 + Gm16064 lincRNA lincRNA MGP_CASTEiJ_T0070188.1 MGP_CASTEiJ_G0028378.1 mouse_genomes_project 5 754556 777651 + MGP_CASTEiJ_P0070188 Lrrd1 protein_coding protein_coding MGP_CASTEiJ_T0070189.1 MGP_CASTEiJ_G0028378.1 mouse_genomes_project 5 754570 759606 + MGP_CASTEiJ_P0070189 Lrrd1 protein_coding protein_coding MGP_CASTEiJ_T0001714.1 MGP_CASTEiJ_G0001637.1 mouse_genomes_project 5 116678905 116681166 - TEC TEC MGP_CASTEiJ_T0008237.1 MGP_CASTEiJ_G0006697.1 mouse_genomes_project 5 153052117 153053418 + 2210417A02Rik lincRNA lincRNA MGP_CASTEiJ_T0072040.1 MGP_CASTEiJ_G0028689.1 mouse_genomes_project 5 64199446 64260536 + MGP_CASTEiJ_P0072040 Ube2k protein_coding protein_coding MGP_CASTEiJ_T0072041.1 MGP_CASTEiJ_G0028689.1 mouse_genomes_project 5 64199462 64259731 + MGP_CASTEiJ_P0072041 Ube2k protein_coding protein_coding MGP_CASTEiJ_T0072042.1 MGP_CASTEiJ_G0028689.1 mouse_genomes_project 5 64199476 64260536 + MGP_CASTEiJ_P0072042 Ube2k protein_coding protein_coding MGP_CASTEiJ_T0072043.1 MGP_CASTEiJ_G0028689.1 mouse_genomes_project 5 64199519 64259926 + MGP_CASTEiJ_P0072043 Ube2k protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072044.1 MGP_CASTEiJ_G0028689.1 mouse_genomes_project 5 64199669 64260809 + MGP_CASTEiJ_P0072044 Ube2k protein_coding protein_coding MGP_CASTEiJ_T0072045.1 MGP_CASTEiJ_G0028689.1 mouse_genomes_project 5 64232806 64235928 + Ube2k protein_coding retained_intron MGP_CASTEiJ_T0072046.1 MGP_CASTEiJ_G0028689.1 mouse_genomes_project 5 64255735 64259926 + Ube2k protein_coding retained_intron MGP_CASTEiJ_T0099865.1 MGP_CASTEiJ_G0036778.1 mouse_genomes_project 5 20918477 20918632 - Gm22054 snRNA snRNA MGP_CASTEiJ_T0004687.1 MGP_CASTEiJ_G0004049.1 mouse_genomes_project 5 125047889 125056871 + A930024E05Rik antisense antisense MGP_CASTEiJ_T0070686.1 MGP_CASTEiJ_G0028463.1 mouse_genomes_project 5 21868965 21890933 - MGP_CASTEiJ_P0070686 Wdr86 protein_coding protein_coding MGP_CASTEiJ_T0070687.1 MGP_CASTEiJ_G0028463.1 mouse_genomes_project 5 21869497 21890886 - Wdr86 protein_coding retained_intron MGP_CASTEiJ_T0070688.1 MGP_CASTEiJ_G0028463.1 mouse_genomes_project 5 21869501 21870610 - Wdr86 protein_coding retained_intron MGP_CASTEiJ_T0070689.1 MGP_CASTEiJ_G0028463.1 mouse_genomes_project 5 21869870 21872811 - MGP_CASTEiJ_P0070689 Wdr86 protein_coding protein_coding MGP_CASTEiJ_T0071677.1 MGP_CASTEiJ_G0028625.1 mouse_genomes_project 5 39352118 39439509 - MGP_CASTEiJ_P0071677 Rab28 protein_coding protein_coding MGP_CASTEiJ_T0071678.1 MGP_CASTEiJ_G0028625.1 mouse_genomes_project 5 39352118 39439542 - MGP_CASTEiJ_P0071678 Rab28 protein_coding protein_coding MGP_CASTEiJ_T0071679.1 MGP_CASTEiJ_G0028625.1 mouse_genomes_project 5 39352119 39439545 - MGP_CASTEiJ_P0071679 Rab28 protein_coding protein_coding MGP_CASTEiJ_T0071680.1 MGP_CASTEiJ_G0028625.1 mouse_genomes_project 5 39352875 39354632 - Rab28 protein_coding retained_intron MGP_CASTEiJ_T0071681.1 MGP_CASTEiJ_G0028625.1 mouse_genomes_project 5 39353356 39356247 - Rab28 protein_coding retained_intron MGP_CASTEiJ_T0001779.1 MGP_CASTEiJ_G0001701.1 mouse_genomes_project 5 132643890 132644389 + TEC TEC MGP_CASTEiJ_T0001448.1 MGP_CASTEiJ_G0001374.1 mouse_genomes_project 5 31111946 31113099 + TEC TEC MGP_CASTEiJ_T0099873.1 MGP_CASTEiJ_G0036786.1 mouse_genomes_project 5 32012748 32012853 + Gm22847 snRNA snRNA MGP_CASTEiJ_T0014484.1 MGP_CASTEiJ_G0012647.1 mouse_genomes_project 5 58111109 58111521 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004637.1 MGP_CASTEiJ_G0004012.1 mouse_genomes_project 5 111045922 111046516 - Gm43137 antisense antisense MGP_CASTEiJ_T0101102.1 MGP_CASTEiJ_G0038015.1 mouse_genomes_project 5 15810598 15810726 + Gm23822 snoRNA snoRNA MGP_CASTEiJ_T0070789.1 MGP_CASTEiJ_G0028486.1 mouse_genomes_project 5 26791094 26900092 + MGP_CASTEiJ_P0070789 Ube3c protein_coding protein_coding MGP_CASTEiJ_T0070790.1 MGP_CASTEiJ_G0028486.1 mouse_genomes_project 5 26791298 26856237 + MGP_CASTEiJ_P0070790 Ube3c protein_coding protein_coding MGP_CASTEiJ_T0070791.1 MGP_CASTEiJ_G0028486.1 mouse_genomes_project 5 26791338 26822371 + Ube3c protein_coding retained_intron MGP_CASTEiJ_T0070792.1 MGP_CASTEiJ_G0028486.1 mouse_genomes_project 5 26812619 26822908 + Ube3c protein_coding processed_transcript MGP_CASTEiJ_T0070793.1 MGP_CASTEiJ_G0028486.1 mouse_genomes_project 5 26854664 26856237 + Ube3c protein_coding retained_intron MGP_CASTEiJ_T0001682.1 MGP_CASTEiJ_G0001605.1 mouse_genomes_project 5 105965663 105967848 + TEC TEC MGP_CASTEiJ_T0074072.1 MGP_CASTEiJ_G0029105.1 mouse_genomes_project 5 122150201 122161912 + MGP_CASTEiJ_P0074072 Lhx5 protein_coding protein_coding MGP_CASTEiJ_T0075852.1 MGP_CASTEiJ_G0029428.1 mouse_genomes_project 5 146953886 146977246 - MGP_CASTEiJ_P0075852 Zfp316 protein_coding protein_coding MGP_CASTEiJ_T0075853.1 MGP_CASTEiJ_G0029428.1 mouse_genomes_project 5 146954478 146960427 - Zfp316 protein_coding retained_intron MGP_CASTEiJ_T0075854.1 MGP_CASTEiJ_G0029428.1 mouse_genomes_project 5 146957393 146968998 - MGP_CASTEiJ_P0075854 Zfp316 protein_coding protein_coding MGP_CASTEiJ_T0008027.1 MGP_CASTEiJ_G0006557.1 mouse_genomes_project 5 100871955 100875622 - Gm36793 lincRNA lincRNA MGP_CASTEiJ_T0071321.1 MGP_CASTEiJ_G0028569.1 mouse_genomes_project 5 31668493 31760963 - MGP_CASTEiJ_P0071321 Zfyve28 protein_coding protein_coding MGP_CASTEiJ_T0071322.1 MGP_CASTEiJ_G0028569.1 mouse_genomes_project 5 31692197 31708184 - Zfyve28 protein_coding retained_intron MGP_CASTEiJ_T0071323.1 MGP_CASTEiJ_G0028569.1 mouse_genomes_project 5 31692282 31708646 - Zfyve28 protein_coding processed_transcript MGP_CASTEiJ_T0071324.1 MGP_CASTEiJ_G0028569.1 mouse_genomes_project 5 31697586 31719230 - Zfyve28 protein_coding retained_intron MGP_CASTEiJ_T0071325.1 MGP_CASTEiJ_G0028569.1 mouse_genomes_project 5 31702210 31761086 - Zfyve28 protein_coding processed_transcript MGP_CASTEiJ_T0071326.1 MGP_CASTEiJ_G0028569.1 mouse_genomes_project 5 31710039 31761074 - MGP_CASTEiJ_P0071326 Zfyve28 protein_coding protein_coding MGP_CASTEiJ_T0073702.1 MGP_CASTEiJ_G0029035.1 mouse_genomes_project 5 115243857 115248110 - MGP_CASTEiJ_P0073702 Alkbh2 protein_coding protein_coding MGP_CASTEiJ_T0073703.1 MGP_CASTEiJ_G0029035.1 mouse_genomes_project 5 115243866 115248152 - MGP_CASTEiJ_P0073703 Alkbh2 protein_coding protein_coding MGP_CASTEiJ_T0073704.1 MGP_CASTEiJ_G0029035.1 mouse_genomes_project 5 115247539 115248115 - MGP_CASTEiJ_P0073704 Alkbh2 protein_coding protein_coding MGP_CASTEiJ_T0014352.1 MGP_CASTEiJ_G0012515.1 mouse_genomes_project 5 4847353 4848092 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073132.1 MGP_CASTEiJ_G0028916.1 mouse_genomes_project 5 104074103 104110928 - MGP_CASTEiJ_P0073132 Hsd17b11 protein_coding protein_coding MGP_CASTEiJ_T0073133.1 MGP_CASTEiJ_G0028916.1 mouse_genomes_project 5 104088334 104110847 - MGP_CASTEiJ_P0073133 Hsd17b11 protein_coding protein_coding MGP_CASTEiJ_T0001447.1 MGP_CASTEiJ_G0001373.1 mouse_genomes_project 5 30408251 30409502 + TEC TEC MGP_CASTEiJ_T0001690.1 MGP_CASTEiJ_G0001613.1 mouse_genomes_project 5 108976855 108978232 - TEC TEC MGP_CASTEiJ_T0007960.1 MGP_CASTEiJ_G0006503.1 mouse_genomes_project 5 72938239 72945833 + Gm43801 lincRNA lincRNA MGP_CASTEiJ_T0004551.1 MGP_CASTEiJ_G0003948.1 mouse_genomes_project 5 41625075 41625752 - Gm16015 antisense antisense MGP_CASTEiJ_T0008183.1 MGP_CASTEiJ_G0006656.1 mouse_genomes_project 5 129503453 129503856 - Gm43476 lincRNA lincRNA MGP_CASTEiJ_T0101616.1 MGP_CASTEiJ_G0038475.1 mouse_genomes_project 5 64922605 64922980 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0014567.1 MGP_CASTEiJ_G0012730.1 mouse_genomes_project 5 97863811 97864425 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001397.1 MGP_CASTEiJ_G0001326.1 mouse_genomes_project 5 10650267 10653587 + TEC TEC MGP_CASTEiJ_T0014615.1 MGP_CASTEiJ_G0012778.1 mouse_genomes_project 5 115370843 115372959 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070923.1 MGP_CASTEiJ_G0028510.1 mouse_genomes_project 5 28186467 28196257 + MGP_CASTEiJ_P0070923 Khk protein_coding protein_coding MGP_CASTEiJ_T0070924.1 MGP_CASTEiJ_G0028510.1 mouse_genomes_project 5 28186624 28196057 + MGP_CASTEiJ_P0070924 Khk protein_coding protein_coding MGP_CASTEiJ_T0070925.1 MGP_CASTEiJ_G0028510.1 mouse_genomes_project 5 28186867 28196198 + MGP_CASTEiJ_P0070925 Khk protein_coding protein_coding MGP_CASTEiJ_T0070926.1 MGP_CASTEiJ_G0028510.1 mouse_genomes_project 5 28186892 28195804 + MGP_CASTEiJ_P0070926 Khk protein_coding protein_coding MGP_CASTEiJ_T0070927.1 MGP_CASTEiJ_G0028510.1 mouse_genomes_project 5 28195624 28196254 + Khk protein_coding retained_intron MGP_CASTEiJ_T0001733.1 MGP_CASTEiJ_G0001656.1 mouse_genomes_project 5 121945257 121946404 + TEC TEC MGP_CASTEiJ_T0098950.1 MGP_CASTEiJ_G0035874.1 mouse_genomes_project 5 1005109 1006995 + Gm43031 sense_intronic sense_intronic MGP_CASTEiJ_T0007942.1 MGP_CASTEiJ_G0006491.1 mouse_genomes_project 5 63006526 63048548 + Gm31363 lincRNA lincRNA MGP_CASTEiJ_T0008244.1 MGP_CASTEiJ_G0006703.1 mouse_genomes_project 5 153337801 153343014 - 5930430L01Rik lincRNA lincRNA MGP_CASTEiJ_T0008245.1 MGP_CASTEiJ_G0006703.1 mouse_genomes_project 5 153338827 153343006 - 5930430L01Rik lincRNA lincRNA MGP_CASTEiJ_T0008001.1 MGP_CASTEiJ_G0006538.1 mouse_genomes_project 5 96576872 96581148 + 1700016F12Rik lincRNA lincRNA MGP_CASTEiJ_T0073296.1 MGP_CASTEiJ_G0028959.1 mouse_genomes_project 5 108539099 108547547 + MGP_CASTEiJ_P0073296 Rpl5 protein_coding protein_coding MGP_CASTEiJ_T0073297.1 MGP_CASTEiJ_G0028959.1 mouse_genomes_project 5 108539105 108542690 + Rpl5 protein_coding retained_intron MGP_CASTEiJ_T0073298.1 MGP_CASTEiJ_G0028959.1 mouse_genomes_project 5 108540656 108542452 + Rpl5 protein_coding retained_intron MGP_CASTEiJ_T0073299.1 MGP_CASTEiJ_G0028959.1 mouse_genomes_project 5 108542680 108546592 + Rpl5 protein_coding retained_intron MGP_CASTEiJ_T0073300.1 MGP_CASTEiJ_G0028959.1 mouse_genomes_project 5 108545163 108546597 + Rpl5 protein_coding retained_intron MGP_CASTEiJ_T0071046.1 MGP_CASTEiJ_G0028528.1 mouse_genomes_project 5 28525814 28536542 + MGP_CASTEiJ_P0071046 Nrbp1 protein_coding protein_coding MGP_CASTEiJ_T0071047.1 MGP_CASTEiJ_G0028528.1 mouse_genomes_project 5 28525814 28536536 + MGP_CASTEiJ_P0071047 Nrbp1 protein_coding protein_coding MGP_CASTEiJ_T0071048.1 MGP_CASTEiJ_G0028528.1 mouse_genomes_project 5 28525827 28529910 + MGP_CASTEiJ_P0071048 Nrbp1 protein_coding protein_coding MGP_CASTEiJ_T0071049.1 MGP_CASTEiJ_G0028528.1 mouse_genomes_project 5 28525845 28530800 + Nrbp1 protein_coding retained_intron MGP_CASTEiJ_T0071050.1 MGP_CASTEiJ_G0028528.1 mouse_genomes_project 5 28525853 28529831 + MGP_CASTEiJ_P0071050 Nrbp1 protein_coding protein_coding MGP_CASTEiJ_T0071051.1 MGP_CASTEiJ_G0028528.1 mouse_genomes_project 5 28525882 28532885 + MGP_CASTEiJ_P0071051 Nrbp1 protein_coding protein_coding MGP_CASTEiJ_T0071052.1 MGP_CASTEiJ_G0028528.1 mouse_genomes_project 5 28528374 28529384 + Nrbp1 protein_coding retained_intron MGP_CASTEiJ_T0071053.1 MGP_CASTEiJ_G0028528.1 mouse_genomes_project 5 28532390 28534955 + Nrbp1 protein_coding retained_intron MGP_CASTEiJ_T0071054.1 MGP_CASTEiJ_G0028528.1 mouse_genomes_project 5 28534328 28536539 + Nrbp1 protein_coding retained_intron MGP_CASTEiJ_T0071055.1 MGP_CASTEiJ_G0028528.1 mouse_genomes_project 5 28534564 28535707 + Nrbp1 protein_coding retained_intron MGP_CASTEiJ_T0071056.1 MGP_CASTEiJ_G0028528.1 mouse_genomes_project 5 28535318 28536426 + Nrbp1 protein_coding retained_intron MGP_CASTEiJ_T0014577.1 MGP_CASTEiJ_G0012740.1 mouse_genomes_project 5 102198280 102199059 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001810.1 MGP_CASTEiJ_G0001732.1 mouse_genomes_project 5 136948900 136950266 + TEC TEC MGP_CASTEiJ_T0001811.1 MGP_CASTEiJ_G0001732.1 mouse_genomes_project 5 136948912 136949511 + TEC TEC MGP_CASTEiJ_T0001463.1 MGP_CASTEiJ_G0001389.1 mouse_genomes_project 5 39029012 39030673 + TEC TEC MGP_CASTEiJ_T0004745.1 MGP_CASTEiJ_G0004090.1 mouse_genomes_project 5 147043023 147046488 + 0610040B10Rik antisense antisense MGP_CASTEiJ_T0004746.1 MGP_CASTEiJ_G0004090.1 mouse_genomes_project 5 147043083 147044729 + 0610040B10Rik antisense antisense MGP_CASTEiJ_T0004747.1 MGP_CASTEiJ_G0004090.1 mouse_genomes_project 5 147043102 147046485 + 0610040B10Rik antisense antisense MGP_CASTEiJ_T0074225.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123650901 123698542 + Atxn2 protein_coding processed_transcript MGP_CASTEiJ_T0074226.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123651094 123774227 + MGP_CASTEiJ_P0074226 Atxn2 protein_coding protein_coding MGP_CASTEiJ_T0074227.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123692662 123729144 + Atxn2 protein_coding processed_transcript MGP_CASTEiJ_T0074228.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123698554 123774226 + MGP_CASTEiJ_P0074228 Atxn2 protein_coding protein_coding MGP_CASTEiJ_T0074229.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123734259 123752946 + MGP_CASTEiJ_P0074229 Atxn2 protein_coding protein_coding MGP_CASTEiJ_T0074230.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123736328 123740193 + Atxn2 protein_coding retained_intron MGP_CASTEiJ_T0074231.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123740776 123773998 + MGP_CASTEiJ_P0074231 Atxn2 protein_coding protein_coding MGP_CASTEiJ_T0074232.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123741941 123753357 + Atxn2 protein_coding retained_intron MGP_CASTEiJ_T0074233.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123755290 123762681 + Atxn2 protein_coding retained_intron MGP_CASTEiJ_T0074234.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123759179 123761510 + Atxn2 protein_coding processed_transcript MGP_CASTEiJ_T0074235.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123760990 123770222 + Atxn2 protein_coding retained_intron MGP_CASTEiJ_T0074236.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123761355 123768299 + Atxn2 protein_coding retained_intron MGP_CASTEiJ_T0074237.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123761474 123773909 + MGP_CASTEiJ_P0074237 Atxn2 protein_coding protein_coding MGP_CASTEiJ_T0074238.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123764822 123774011 + Atxn2 protein_coding retained_intron MGP_CASTEiJ_T0074239.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123765486 123772733 + MGP_CASTEiJ_P0074239 Atxn2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074240.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123769934 123770804 + Atxn2 protein_coding retained_intron MGP_CASTEiJ_T0074241.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123770235 123771201 + Atxn2 protein_coding retained_intron MGP_CASTEiJ_T0074242.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123770730 123775769 + MGP_CASTEiJ_P0074242 Atxn2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074243.1 MGP_CASTEiJ_G0029139.1 mouse_genomes_project 5 123770777 123774175 + MGP_CASTEiJ_P0074243 Atxn2 protein_coding protein_coding MGP_CASTEiJ_T0070894.1 MGP_CASTEiJ_G0028506.1 mouse_genomes_project 5 28126801 28139409 + MGP_CASTEiJ_P0070894 Tmem214 protein_coding protein_coding MGP_CASTEiJ_T0070895.1 MGP_CASTEiJ_G0028506.1 mouse_genomes_project 5 28128420 28137262 + MGP_CASTEiJ_P0070895 Tmem214 protein_coding protein_coding MGP_CASTEiJ_T0070896.1 MGP_CASTEiJ_G0028506.1 mouse_genomes_project 5 28128422 28138591 + Tmem214 protein_coding retained_intron MGP_CASTEiJ_T0070897.1 MGP_CASTEiJ_G0028506.1 mouse_genomes_project 5 28128424 28137687 + Tmem214 protein_coding retained_intron MGP_CASTEiJ_T0070898.1 MGP_CASTEiJ_G0028506.1 mouse_genomes_project 5 28129152 28131720 + Tmem214 protein_coding retained_intron MGP_CASTEiJ_T0070899.1 MGP_CASTEiJ_G0028506.1 mouse_genomes_project 5 28132007 28133835 + Tmem214 protein_coding processed_transcript MGP_CASTEiJ_T0070900.1 MGP_CASTEiJ_G0028506.1 mouse_genomes_project 5 28132052 28137682 + Tmem214 protein_coding retained_intron MGP_CASTEiJ_T0071450.1 MGP_CASTEiJ_G0028585.1 mouse_genomes_project 5 32809479 32812925 + MGP_CASTEiJ_P0071450 Adra2c protein_coding protein_coding MGP_CASTEiJ_T0098970.1 MGP_CASTEiJ_G0035894.1 mouse_genomes_project 5 116786887 116787617 + Gm13840 sense_intronic sense_intronic MGP_CASTEiJ_T0014499.1 MGP_CASTEiJ_G0012662.1 mouse_genomes_project 5 62744760 62745706 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001407.1 MGP_CASTEiJ_G0001336.1 mouse_genomes_project 5 12578393 12579672 + TEC TEC MGP_CASTEiJ_T0101111.1 MGP_CASTEiJ_G0038024.1 mouse_genomes_project 5 52957678 52957807 + Gm24235 snoRNA snoRNA MGP_CASTEiJ_T0014468.1 MGP_CASTEiJ_G0012631.1 mouse_genomes_project 5 50970564 50971486 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072406.1 MGP_CASTEiJ_G0028747.1 mouse_genomes_project 5 75124989 75172990 - MGP_CASTEiJ_P0072406 Kdr protein_coding protein_coding MGP_CASTEiJ_T0072407.1 MGP_CASTEiJ_G0028747.1 mouse_genomes_project 5 75127888 75172822 - MGP_CASTEiJ_P0072407 Kdr protein_coding unknown_likely_coding MGP_CASTEiJ_T0072408.1 MGP_CASTEiJ_G0028747.1 mouse_genomes_project 5 75149964 75172990 - Kdr protein_coding retained_intron MGP_CASTEiJ_T0072409.1 MGP_CASTEiJ_G0028747.1 mouse_genomes_project 5 75153811 75172990 - Kdr protein_coding retained_intron MGP_CASTEiJ_T0098989.1 MGP_CASTEiJ_G0035909.1 mouse_genomes_project 5 155288218 155291080 + Gm43807 sense_intronic sense_intronic MGP_CASTEiJ_T0014651.1 MGP_CASTEiJ_G0012814.1 mouse_genomes_project 5 140662746 140663098 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073078.1 MGP_CASTEiJ_G0028906.1 mouse_genomes_project 5 101782365 101845634 + MGP_CASTEiJ_P0073078 Cds1 protein_coding protein_coding MGP_CASTEiJ_T0073079.1 MGP_CASTEiJ_G0028906.1 mouse_genomes_project 5 101828528 101843223 + Cds1 protein_coding retained_intron MGP_CASTEiJ_T0070379.1 MGP_CASTEiJ_G0028407.1 mouse_genomes_project 5 9383407 9593495 + MGP_CASTEiJ_P0070379 Sema3d protein_coding protein_coding MGP_CASTEiJ_T0070380.1 MGP_CASTEiJ_G0028407.1 mouse_genomes_project 5 9383528 9561700 + Sema3d protein_coding processed_transcript MGP_CASTEiJ_T0070381.1 MGP_CASTEiJ_G0028407.1 mouse_genomes_project 5 9383528 9582304 + MGP_CASTEiJ_P0070381 Sema3d protein_coding protein_coding MGP_CASTEiJ_T0070382.1 MGP_CASTEiJ_G0028407.1 mouse_genomes_project 5 9491013 9516267 + Sema3d protein_coding processed_transcript MGP_CASTEiJ_T0070383.1 MGP_CASTEiJ_G0028407.1 mouse_genomes_project 5 9579049 9592505 + Sema3d protein_coding processed_transcript MGP_CASTEiJ_T0072941.1 MGP_CASTEiJ_G0028876.1 mouse_genomes_project 5 96742140 96841227 + MGP_CASTEiJ_P0072941 Bmp2k protein_coding protein_coding MGP_CASTEiJ_T0072942.1 MGP_CASTEiJ_G0028876.1 mouse_genomes_project 5 96742140 96818321 + MGP_CASTEiJ_P0072942 Bmp2k protein_coding protein_coding MGP_CASTEiJ_T0071639.1 MGP_CASTEiJ_G0028618.1 mouse_genomes_project 5 35950307 35978424 + MGP_CASTEiJ_P0071639 Otop1 protein_coding protein_coding MGP_CASTEiJ_T0071640.1 MGP_CASTEiJ_G0028618.1 mouse_genomes_project 5 35951743 35978432 + Otop1 protein_coding processed_transcript MGP_CASTEiJ_T0071641.1 MGP_CASTEiJ_G0028618.1 mouse_genomes_project 5 35951743 35978423 + MGP_CASTEiJ_P0071641 Otop1 protein_coding protein_coding MGP_CASTEiJ_T0071642.1 MGP_CASTEiJ_G0028618.1 mouse_genomes_project 5 35960296 35977597 + Otop1 protein_coding processed_transcript MGP_CASTEiJ_T0101134.1 MGP_CASTEiJ_G0038047.1 mouse_genomes_project 5 99755632 99755708 + Gm26252 snoRNA snoRNA MGP_CASTEiJ_T0001835.1 MGP_CASTEiJ_G0001756.1 mouse_genomes_project 5 147953009 147954804 + TEC TEC MGP_CASTEiJ_T0073620.1 MGP_CASTEiJ_G0029021.1 mouse_genomes_project 5 114270474 114348297 - MGP_CASTEiJ_P0073620 Sgsm1 protein_coding protein_coding MGP_CASTEiJ_T0073621.1 MGP_CASTEiJ_G0029021.1 mouse_genomes_project 5 114270483 114313210 - MGP_CASTEiJ_P0073621 Sgsm1 protein_coding protein_coding MGP_CASTEiJ_T0073622.1 MGP_CASTEiJ_G0029021.1 mouse_genomes_project 5 114286516 114313210 - Sgsm1 protein_coding processed_transcript MGP_CASTEiJ_T0073623.1 MGP_CASTEiJ_G0029021.1 mouse_genomes_project 5 114287155 114348288 - Sgsm1 protein_coding processed_transcript MGP_CASTEiJ_T0073624.1 MGP_CASTEiJ_G0029021.1 mouse_genomes_project 5 114296768 114348250 - MGP_CASTEiJ_P0073624 Sgsm1 protein_coding protein_coding MGP_CASTEiJ_T0073625.1 MGP_CASTEiJ_G0029021.1 mouse_genomes_project 5 114297380 114348208 - MGP_CASTEiJ_P0073625 Sgsm1 protein_coding protein_coding MGP_CASTEiJ_T0073626.1 MGP_CASTEiJ_G0029021.1 mouse_genomes_project 5 114306548 114313196 - MGP_CASTEiJ_P0073626 Sgsm1 protein_coding protein_coding MGP_CASTEiJ_T0073627.1 MGP_CASTEiJ_G0029021.1 mouse_genomes_project 5 114308496 114311928 - Sgsm1 protein_coding retained_intron MGP_CASTEiJ_T0073628.1 MGP_CASTEiJ_G0029021.1 mouse_genomes_project 5 114312221 114315777 - Sgsm1 protein_coding retained_intron MGP_CASTEiJ_T0073629.1 MGP_CASTEiJ_G0029021.1 mouse_genomes_project 5 114320000 114348231 - Sgsm1 protein_coding retained_intron MGP_CASTEiJ_T0074945.1 MGP_CASTEiJ_G0029256.1 mouse_genomes_project 5 136957705 137002346 + MGP_CASTEiJ_P0074945 Gtf2ird2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074946.1 MGP_CASTEiJ_G0029256.1 mouse_genomes_project 5 136957727 136996146 + MGP_CASTEiJ_P0074946 Gtf2ird2 protein_coding protein_coding MGP_CASTEiJ_T0074947.1 MGP_CASTEiJ_G0029256.1 mouse_genomes_project 5 136975794 136976422 + Gtf2ird2 protein_coding processed_transcript MGP_CASTEiJ_T0074948.1 MGP_CASTEiJ_G0029256.1 mouse_genomes_project 5 136984689 136994208 + Gtf2ird2 protein_coding retained_intron MGP_CASTEiJ_T0073880.1 MGP_CASTEiJ_G0029072.1 mouse_genomes_project 5 116574702 116578034 - MGP_CASTEiJ_P0073880 Cox6a1 protein_coding protein_coding MGP_CASTEiJ_T0073881.1 MGP_CASTEiJ_G0029072.1 mouse_genomes_project 5 116574717 116577967 - Cox6a1 protein_coding retained_intron MGP_CASTEiJ_T0001599.1 MGP_CASTEiJ_G0001523.1 mouse_genomes_project 5 65523702 65525261 + TEC TEC MGP_CASTEiJ_T0004581.1 MGP_CASTEiJ_G0003972.1 mouse_genomes_project 5 66790690 66800139 - 4930425K10Rik antisense antisense MGP_CASTEiJ_T0001481.1 MGP_CASTEiJ_G0001407.1 mouse_genomes_project 5 42352022 42352161 + TEC TEC MGP_CASTEiJ_T0007850.1 MGP_CASTEiJ_G0006427.1 mouse_genomes_project 5 19484329 19488246 - Gm43657 lincRNA lincRNA MGP_CASTEiJ_T0070941.1 MGP_CASTEiJ_G0028513.1 mouse_genomes_project 5 28310548 28323641 - MGP_CASTEiJ_P0070941 Slc5a6 protein_coding protein_coding MGP_CASTEiJ_T0070942.1 MGP_CASTEiJ_G0028513.1 mouse_genomes_project 5 28310548 28322719 - MGP_CASTEiJ_P0070942 Slc5a6 protein_coding protein_coding MGP_CASTEiJ_T0070943.1 MGP_CASTEiJ_G0028513.1 mouse_genomes_project 5 28310548 28323279 - MGP_CASTEiJ_P0070943 Slc5a6 protein_coding protein_coding MGP_CASTEiJ_T0070944.1 MGP_CASTEiJ_G0028513.1 mouse_genomes_project 5 28310549 28322726 - MGP_CASTEiJ_P0070944 Slc5a6 protein_coding protein_coding MGP_CASTEiJ_T0070945.1 MGP_CASTEiJ_G0028513.1 mouse_genomes_project 5 28311534 28312641 - Slc5a6 protein_coding retained_intron MGP_CASTEiJ_T0070946.1 MGP_CASTEiJ_G0028513.1 mouse_genomes_project 5 28313993 28317327 - MGP_CASTEiJ_P0070946 Slc5a6 protein_coding protein_coding MGP_CASTEiJ_T0070947.1 MGP_CASTEiJ_G0028513.1 mouse_genomes_project 5 28317817 28322796 - MGP_CASTEiJ_P0070947 Slc5a6 protein_coding protein_coding MGP_CASTEiJ_T0099872.1 MGP_CASTEiJ_G0036785.1 mouse_genomes_project 5 31631317 31631420 + Gm25918 snRNA snRNA MGP_CASTEiJ_T0101110.1 MGP_CASTEiJ_G0038023.1 mouse_genomes_project 5 51013861 51013973 - Gm23532 snoRNA snoRNA MGP_CASTEiJ_T0075773.1 MGP_CASTEiJ_G0029411.1 mouse_genomes_project 5 144765140 145779636 + MGP_CASTEiJ_P0075773 Sdk1 protein_coding protein_coding MGP_CASTEiJ_T0075774.1 MGP_CASTEiJ_G0029411.1 mouse_genomes_project 5 144765568 145122935 + Sdk1 protein_coding retained_intron MGP_CASTEiJ_T0075775.1 MGP_CASTEiJ_G0029411.1 mouse_genomes_project 5 144904780 145509440 + Sdk1 protein_coding retained_intron MGP_CASTEiJ_T0075776.1 MGP_CASTEiJ_G0029411.1 mouse_genomes_project 5 145403591 145777241 + MGP_CASTEiJ_P0075776 Sdk1 protein_coding protein_coding MGP_CASTEiJ_T0010383.1 MGP_CASTEiJ_G0008571.1 mouse_genomes_project 5 62659966 62660062 - Gm22395 miRNA miRNA MGP_CASTEiJ_T0014416.1 MGP_CASTEiJ_G0012579.1 mouse_genomes_project 5 25269400 25271633 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072785.1 MGP_CASTEiJ_G0028847.1 mouse_genomes_project 5 91641043 91757930 + MGP_CASTEiJ_P0072785 Parm1 protein_coding protein_coding MGP_CASTEiJ_T0099896.1 MGP_CASTEiJ_G0036809.1 mouse_genomes_project 5 85599318 85599479 + Gm24626 snRNA snRNA MGP_CASTEiJ_T0071008.1 MGP_CASTEiJ_G0028523.1 mouse_genomes_project 5 28469135 28475291 - MGP_CASTEiJ_P0071008 Eif2b4 protein_coding protein_coding MGP_CASTEiJ_T0071009.1 MGP_CASTEiJ_G0028523.1 mouse_genomes_project 5 28469136 28475000 - MGP_CASTEiJ_P0071009 Eif2b4 protein_coding protein_coding MGP_CASTEiJ_T0071010.1 MGP_CASTEiJ_G0028523.1 mouse_genomes_project 5 28469144 28474869 - MGP_CASTEiJ_P0071010 Eif2b4 protein_coding protein_coding MGP_CASTEiJ_T0071011.1 MGP_CASTEiJ_G0028523.1 mouse_genomes_project 5 28469145 28474875 - MGP_CASTEiJ_P0071011 Eif2b4 protein_coding protein_coding MGP_CASTEiJ_T0071012.1 MGP_CASTEiJ_G0028523.1 mouse_genomes_project 5 28469146 28473505 - MGP_CASTEiJ_P0071012 Eif2b4 protein_coding protein_coding MGP_CASTEiJ_T0071013.1 MGP_CASTEiJ_G0028523.1 mouse_genomes_project 5 28471259 28472719 - Eif2b4 protein_coding retained_intron MGP_CASTEiJ_T0071014.1 MGP_CASTEiJ_G0028523.1 mouse_genomes_project 5 28471426 28471774 - MGP_CASTEiJ_P0071014 Eif2b4 protein_coding protein_coding MGP_CASTEiJ_T0071015.1 MGP_CASTEiJ_G0028523.1 mouse_genomes_project 5 28471446 28473009 - MGP_CASTEiJ_P0071015 Eif2b4 protein_coding protein_coding MGP_CASTEiJ_T0071016.1 MGP_CASTEiJ_G0028523.1 mouse_genomes_project 5 28472255 28473057 - MGP_CASTEiJ_P0071016 Eif2b4 protein_coding protein_coding MGP_CASTEiJ_T0071017.1 MGP_CASTEiJ_G0028523.1 mouse_genomes_project 5 28473057 28475000 - Eif2b4 protein_coding processed_transcript MGP_CASTEiJ_T0071018.1 MGP_CASTEiJ_G0028523.1 mouse_genomes_project 5 28473187 28474860 - Eif2b4 protein_coding retained_intron MGP_CASTEiJ_T0071019.1 MGP_CASTEiJ_G0028523.1 mouse_genomes_project 5 28473575 28475279 - MGP_CASTEiJ_P0071019 Eif2b4 protein_coding protein_coding MGP_CASTEiJ_T0001817.1 MGP_CASTEiJ_G0001738.1 mouse_genomes_project 5 138121985 138122791 + TEC TEC MGP_CASTEiJ_T0075017.1 MGP_CASTEiJ_G0029261.1 mouse_genomes_project 5 137367485 137369501 - MGP_CASTEiJ_P0075017 Syna protein_coding protein_coding MGP_CASTEiJ_T0075336.1 MGP_CASTEiJ_G0029324.1 mouse_genomes_project 5 140297175 140300608 + MGP_CASTEiJ_P0075336 Ache protein_coding protein_coding MGP_CASTEiJ_T0075337.1 MGP_CASTEiJ_G0029324.1 mouse_genomes_project 5 140297422 140300608 + MGP_CASTEiJ_P0075337 Ache protein_coding protein_coding MGP_CASTEiJ_T0075338.1 MGP_CASTEiJ_G0029324.1 mouse_genomes_project 5 140297422 140300608 + MGP_CASTEiJ_P0075338 Ache protein_coding protein_coding MGP_CASTEiJ_T0075339.1 MGP_CASTEiJ_G0029324.1 mouse_genomes_project 5 140297933 140304878 + MGP_CASTEiJ_P0075339 Ache protein_coding protein_coding MGP_CASTEiJ_T0075340.1 MGP_CASTEiJ_G0029324.1 mouse_genomes_project 5 140297939 140304873 + MGP_CASTEiJ_P0075340 Ache protein_coding protein_coding MGP_CASTEiJ_T0075341.1 MGP_CASTEiJ_G0029324.1 mouse_genomes_project 5 140297940 140304872 + MGP_CASTEiJ_P0075341 Ache protein_coding protein_coding MGP_CASTEiJ_T0075342.1 MGP_CASTEiJ_G0029324.1 mouse_genomes_project 5 140297941 140302802 + Ache protein_coding retained_intron MGP_CASTEiJ_T0075343.1 MGP_CASTEiJ_G0029324.1 mouse_genomes_project 5 140299541 140300608 + MGP_CASTEiJ_P0075343 Ache protein_coding protein_coding MGP_CASTEiJ_T0075344.1 MGP_CASTEiJ_G0029324.1 mouse_genomes_project 5 140299700 140300608 + MGP_CASTEiJ_P0075344 Ache protein_coding protein_coding MGP_CASTEiJ_T0011282.1 MGP_CASTEiJ_G0009470.1 mouse_genomes_project 5 135495171 135495450 + Gm25722 misc_RNA misc_RNA MGP_CASTEiJ_T0074877.1 MGP_CASTEiJ_G0029244.1 mouse_genomes_project 5 132579368 132647812 + MGP_CASTEiJ_P0074877 Tpst1 protein_coding protein_coding MGP_CASTEiJ_T0074878.1 MGP_CASTEiJ_G0029244.1 mouse_genomes_project 5 132585455 132647812 + MGP_CASTEiJ_P0074878 Tpst1 protein_coding protein_coding MGP_CASTEiJ_T0074879.1 MGP_CASTEiJ_G0029244.1 mouse_genomes_project 5 132602529 132612283 + MGP_CASTEiJ_P0074879 Tpst1 protein_coding protein_coding MGP_CASTEiJ_T0014386.1 MGP_CASTEiJ_G0012549.1 mouse_genomes_project 5 19639020 19639335 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001664.1 MGP_CASTEiJ_G0001587.1 mouse_genomes_project 5 97793801 97795378 - TEC TEC MGP_CASTEiJ_T0007914.1 MGP_CASTEiJ_G0006465.1 mouse_genomes_project 5 40754511 40758835 - Gm42711 lincRNA lincRNA MGP_CASTEiJ_T0075709.1 MGP_CASTEiJ_G0029396.1 mouse_genomes_project 5 143301318 143376175 + MGP_CASTEiJ_P0075709 Elfn1 protein_coding protein_coding MGP_CASTEiJ_T0075710.1 MGP_CASTEiJ_G0029396.1 mouse_genomes_project 5 143301849 143372500 + Elfn1 protein_coding processed_transcript MGP_CASTEiJ_T0075148.1 MGP_CASTEiJ_G0029288.1 mouse_genomes_project 5 138444455 138447594 - MGP_CASTEiJ_P0075148 Ccl24 protein_coding protein_coding MGP_CASTEiJ_T0075149.1 MGP_CASTEiJ_G0029288.1 mouse_genomes_project 5 138445101 138447594 - MGP_CASTEiJ_P0075149 Ccl24 protein_coding protein_coding MGP_CASTEiJ_T0001574.1 MGP_CASTEiJ_G0001498.1 mouse_genomes_project 5 64150516 64151438 + TEC TEC MGP_CASTEiJ_T0017466.1 MGP_CASTEiJ_G0014935.1 mouse_genomes_project 5 153763345 153827666 + Gm20488 processed_transcript processed_transcript MGP_CASTEiJ_T0073879.1 MGP_CASTEiJ_G0029071.1 mouse_genomes_project 5 116570297 116572629 + MGP_CASTEiJ_P0073879 Triap1 protein_coding protein_coding MGP_CASTEiJ_T0072963.1 MGP_CASTEiJ_G0028886.1 mouse_genomes_project 5 98687114 98706453 + MGP_CASTEiJ_P0072963 Bmp3 protein_coding protein_coding MGP_CASTEiJ_T0072964.1 MGP_CASTEiJ_G0028886.1 mouse_genomes_project 5 98687138 98719823 + MGP_CASTEiJ_P0072964 Bmp3 protein_coding protein_coding MGP_CASTEiJ_T0072965.1 MGP_CASTEiJ_G0028886.1 mouse_genomes_project 5 98687150 98719823 + MGP_CASTEiJ_P0072965 Bmp3 protein_coding protein_coding MGP_CASTEiJ_T0008116.1 MGP_CASTEiJ_G0006612.1 mouse_genomes_project 5 117654531 117656800 + Gm13839 lincRNA lincRNA MGP_CASTEiJ_T0004575.1 MGP_CASTEiJ_G0003967.1 mouse_genomes_project 5 65805809 65808154 - Gm15948 antisense antisense MGP_CASTEiJ_T0001469.1 MGP_CASTEiJ_G0001395.1 mouse_genomes_project 5 41463884 41465194 - TEC TEC MGP_CASTEiJ_T0001768.1 MGP_CASTEiJ_G0001690.1 mouse_genomes_project 5 129614978 129616038 + TEC TEC MGP_CASTEiJ_T0007925.1 MGP_CASTEiJ_G0006475.1 mouse_genomes_project 5 48456408 48604623 + Gm43016 lincRNA lincRNA MGP_CASTEiJ_T0014368.1 MGP_CASTEiJ_G0012531.1 mouse_genomes_project 5 13339842 13340864 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008241.1 MGP_CASTEiJ_G0006701.1 mouse_genomes_project 5 153289180 153290574 + 8430423G03Rik lincRNA lincRNA MGP_CASTEiJ_T0001412.1 MGP_CASTEiJ_G0001341.1 mouse_genomes_project 5 17721652 17722151 + TEC TEC MGP_CASTEiJ_T0101146.1 MGP_CASTEiJ_G0038059.1 mouse_genomes_project 5 148569532 148569661 + Gm23995 snoRNA snoRNA MGP_CASTEiJ_T0070667.1 MGP_CASTEiJ_G0028460.1 mouse_genomes_project 5 21731312 21738766 + MGP_CASTEiJ_P0070667 Chpf2 protein_coding protein_coding MGP_CASTEiJ_T0070668.1 MGP_CASTEiJ_G0028460.1 mouse_genomes_project 5 21731313 21733544 + Chpf2 protein_coding processed_transcript MGP_CASTEiJ_T0070669.1 MGP_CASTEiJ_G0028460.1 mouse_genomes_project 5 21731321 21736855 + MGP_CASTEiJ_P0070669 Chpf2 protein_coding protein_coding MGP_CASTEiJ_T0070670.1 MGP_CASTEiJ_G0028460.1 mouse_genomes_project 5 21731343 21732819 + Chpf2 protein_coding processed_transcript MGP_CASTEiJ_T0070671.1 MGP_CASTEiJ_G0028460.1 mouse_genomes_project 5 21731396 21735590 + MGP_CASTEiJ_P0070671 Chpf2 protein_coding protein_coding MGP_CASTEiJ_T0070676.1 MGP_CASTEiJ_G0028460.1 mouse_genomes_project 5 21737857 21738927 + Chpf2 protein_coding processed_transcript MGP_CASTEiJ_T0014343.1 MGP_CASTEiJ_G0012506.1 mouse_genomes_project 5 273344 273525 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073473.1 MGP_CASTEiJ_G0028992.1 mouse_genomes_project 5 111184849 111278042 - MGP_CASTEiJ_P0073473 Fbrsl1 protein_coding protein_coding MGP_CASTEiJ_T0073474.1 MGP_CASTEiJ_G0028992.1 mouse_genomes_project 5 111185886 111278025 - MGP_CASTEiJ_P0073474 Fbrsl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073475.1 MGP_CASTEiJ_G0028992.1 mouse_genomes_project 5 111186137 111277706 - MGP_CASTEiJ_P0073475 Fbrsl1 protein_coding protein_coding MGP_CASTEiJ_T0073476.1 MGP_CASTEiJ_G0028992.1 mouse_genomes_project 5 111205687 111262642 - MGP_CASTEiJ_P0073476 Fbrsl1 protein_coding protein_coding MGP_CASTEiJ_T0073477.1 MGP_CASTEiJ_G0028992.1 mouse_genomes_project 5 111259504 111261490 - Fbrsl1 protein_coding processed_transcript MGP_CASTEiJ_T0073478.1 MGP_CASTEiJ_G0028992.1 mouse_genomes_project 5 111261622 111262949 - Fbrsl1 protein_coding processed_transcript MGP_CASTEiJ_T0073479.1 MGP_CASTEiJ_G0028992.1 mouse_genomes_project 5 111261622 111278042 - MGP_CASTEiJ_P0073479 Fbrsl1 protein_coding protein_coding MGP_CASTEiJ_T0075672.1 MGP_CASTEiJ_G0029386.1 mouse_genomes_project 5 142762391 142774164 + MGP_CASTEiJ_P0075672 C130050O18Rik protein_coding protein_coding MGP_CASTEiJ_T0075673.1 MGP_CASTEiJ_G0029386.1 mouse_genomes_project 5 142763528 142774161 + MGP_CASTEiJ_P0075673 C130050O18Rik protein_coding protein_coding MGP_CASTEiJ_T0075674.1 MGP_CASTEiJ_G0029386.1 mouse_genomes_project 5 142763605 142774166 + MGP_CASTEiJ_P0075674 C130050O18Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075905.1 MGP_CASTEiJ_G0029441.1 mouse_genomes_project 5 147600866 147608007 - MGP_CASTEiJ_P0075905 Aimp2 protein_coding protein_coding MGP_CASTEiJ_T0075906.1 MGP_CASTEiJ_G0029441.1 mouse_genomes_project 5 147600866 147608015 - MGP_CASTEiJ_P0075906 Aimp2 protein_coding protein_coding MGP_CASTEiJ_T0075907.1 MGP_CASTEiJ_G0029441.1 mouse_genomes_project 5 147604266 147607952 - Aimp2 protein_coding retained_intron MGP_CASTEiJ_T0075908.1 MGP_CASTEiJ_G0029441.1 mouse_genomes_project 5 147604547 147607956 - Aimp2 protein_coding retained_intron MGP_CASTEiJ_T0073283.1 MGP_CASTEiJ_G0028957.1 mouse_genomes_project 5 108375897 108463289 - MGP_CASTEiJ_P0073283 Evi5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073284.1 MGP_CASTEiJ_G0028957.1 mouse_genomes_project 5 108375897 108476426 - MGP_CASTEiJ_P0073284 Evi5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073285.1 MGP_CASTEiJ_G0028957.1 mouse_genomes_project 5 108375901 108511666 - MGP_CASTEiJ_P0073285 Evi5 protein_coding protein_coding MGP_CASTEiJ_T0073286.1 MGP_CASTEiJ_G0028957.1 mouse_genomes_project 5 108378383 108443337 - Evi5 protein_coding retained_intron MGP_CASTEiJ_T0073287.1 MGP_CASTEiJ_G0028957.1 mouse_genomes_project 5 108397940 108433106 - Evi5 protein_coding retained_intron MGP_CASTEiJ_T0073288.1 MGP_CASTEiJ_G0028957.1 mouse_genomes_project 5 108448330 108505738 - MGP_CASTEiJ_P0073288 Evi5 protein_coding protein_coding MGP_CASTEiJ_T0073289.1 MGP_CASTEiJ_G0028957.1 mouse_genomes_project 5 108450005 108451654 - Evi5 protein_coding retained_intron MGP_CASTEiJ_T0073290.1 MGP_CASTEiJ_G0028957.1 mouse_genomes_project 5 108450455 108511603 - Evi5 protein_coding processed_transcript MGP_CASTEiJ_T0073291.1 MGP_CASTEiJ_G0028957.1 mouse_genomes_project 5 108457123 108471751 - Evi5 protein_coding retained_intron MGP_CASTEiJ_T0073292.1 MGP_CASTEiJ_G0028957.1 mouse_genomes_project 5 108458747 108505469 - Evi5 protein_coding processed_transcript MGP_CASTEiJ_T0073294.1 MGP_CASTEiJ_G0028957.1 mouse_genomes_project 5 108484326 108511615 - Evi5 protein_coding processed_transcript MGP_CASTEiJ_T0073295.1 MGP_CASTEiJ_G0028957.1 mouse_genomes_project 5 108509157 108511611 - Evi5 protein_coding processed_transcript MGP_CASTEiJ_T0014348.1 MGP_CASTEiJ_G0012511.1 mouse_genomes_project 5 3647767 3648038 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072966.1 MGP_CASTEiJ_G0028887.1 mouse_genomes_project 5 98756454 98871142 - MGP_CASTEiJ_P0072966 Prkg2 protein_coding protein_coding MGP_CASTEiJ_T0072967.1 MGP_CASTEiJ_G0028887.1 mouse_genomes_project 5 98757916 98773088 - MGP_CASTEiJ_P0072967 Prkg2 protein_coding protein_coding MGP_CASTEiJ_T0072968.1 MGP_CASTEiJ_G0028887.1 mouse_genomes_project 5 98757916 98773086 - MGP_CASTEiJ_P0072968 Prkg2 protein_coding protein_coding MGP_CASTEiJ_T0072969.1 MGP_CASTEiJ_G0028887.1 mouse_genomes_project 5 98758369 98870826 - MGP_CASTEiJ_P0072969 Prkg2 protein_coding protein_coding MGP_CASTEiJ_T0072970.1 MGP_CASTEiJ_G0028887.1 mouse_genomes_project 5 98776595 98797017 - Prkg2 protein_coding retained_intron MGP_CASTEiJ_T0099900.1 MGP_CASTEiJ_G0036813.1 mouse_genomes_project 5 93234631 93234739 - Gm25521 snRNA snRNA MGP_CASTEiJ_T0101103.1 MGP_CASTEiJ_G0038016.1 mouse_genomes_project 5 17092881 17093010 - Gm25761 snoRNA snoRNA MGP_CASTEiJ_T0072007.1 MGP_CASTEiJ_G0028684.1 mouse_genomes_project 5 64042039 64043581 - protein_coding retained_intron MGP_CASTEiJ_T0072008.1 MGP_CASTEiJ_G0028684.1 mouse_genomes_project 5 64042039 64045582 - MGP_CASTEiJ_P0072008 protein_coding protein_coding MGP_CASTEiJ_T0072009.1 MGP_CASTEiJ_G0028684.1 mouse_genomes_project 5 64042039 64045410 - MGP_CASTEiJ_P0072009 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072010.1 MGP_CASTEiJ_G0028684.1 mouse_genomes_project 5 64042039 64046021 - MGP_CASTEiJ_P0072010 protein_coding protein_coding MGP_CASTEiJ_T0072011.1 MGP_CASTEiJ_G0028684.1 mouse_genomes_project 5 64042039 64045976 - MGP_CASTEiJ_P0072011 protein_coding protein_coding MGP_CASTEiJ_T0072012.1 MGP_CASTEiJ_G0028684.1 mouse_genomes_project 5 64042040 64045975 - protein_coding retained_intron MGP_CASTEiJ_T0072013.1 MGP_CASTEiJ_G0028684.1 mouse_genomes_project 5 64042082 64044040 - protein_coding retained_intron MGP_CASTEiJ_T0072014.1 MGP_CASTEiJ_G0028684.1 mouse_genomes_project 5 64042153 64045957 - MGP_CASTEiJ_P0072014 protein_coding protein_coding MGP_CASTEiJ_T0072015.1 MGP_CASTEiJ_G0028684.1 mouse_genomes_project 5 64042351 64045958 - protein_coding retained_intron MGP_CASTEiJ_T0072016.1 MGP_CASTEiJ_G0028684.1 mouse_genomes_project 5 64043024 64046074 - MGP_CASTEiJ_P0072016 protein_coding unknown_likely_coding MGP_CASTEiJ_T0072017.1 MGP_CASTEiJ_G0028684.1 mouse_genomes_project 5 64043024 64046011 - MGP_CASTEiJ_P0072017 protein_coding protein_coding MGP_CASTEiJ_T0072018.1 MGP_CASTEiJ_G0028684.1 mouse_genomes_project 5 64043583 64045568 - protein_coding retained_intron MGP_CASTEiJ_T0072397.1 MGP_CASTEiJ_G0028746.1 mouse_genomes_project 5 74724468 74808298 + MGP_CASTEiJ_P0072397 Kit protein_coding protein_coding MGP_CASTEiJ_T0072398.1 MGP_CASTEiJ_G0028746.1 mouse_genomes_project 5 74724507 74808298 + MGP_CASTEiJ_P0072398 Kit protein_coding protein_coding MGP_CASTEiJ_T0072399.1 MGP_CASTEiJ_G0028746.1 mouse_genomes_project 5 74724542 74819377 + MGP_CASTEiJ_P0072399 Kit protein_coding unknown_likely_coding MGP_CASTEiJ_T0072400.1 MGP_CASTEiJ_G0028746.1 mouse_genomes_project 5 74763610 74773978 + Kit protein_coding retained_intron MGP_CASTEiJ_T0072401.1 MGP_CASTEiJ_G0028746.1 mouse_genomes_project 5 74790084 74792003 + Kit protein_coding retained_intron MGP_CASTEiJ_T0072402.1 MGP_CASTEiJ_G0028746.1 mouse_genomes_project 5 74795515 74797478 + Kit protein_coding retained_intron MGP_CASTEiJ_T0072403.1 MGP_CASTEiJ_G0028746.1 mouse_genomes_project 5 74797186 74804405 + Kit protein_coding retained_intron MGP_CASTEiJ_T0072404.1 MGP_CASTEiJ_G0028746.1 mouse_genomes_project 5 74800646 74808238 + Kit protein_coding retained_intron MGP_CASTEiJ_T0072405.1 MGP_CASTEiJ_G0028746.1 mouse_genomes_project 5 74800745 74803850 + Kit protein_coding retained_intron MGP_CASTEiJ_T0011285.1 MGP_CASTEiJ_G0009473.1 mouse_genomes_project 5 143230024 143230345 + Gm24146 misc_RNA misc_RNA MGP_CASTEiJ_T0070857.1 MGP_CASTEiJ_G0028499.1 mouse_genomes_project 5 27710198 27724980 + MGP_CASTEiJ_P0070857 1700001C02Rik protein_coding protein_coding MGP_CASTEiJ_T0070858.1 MGP_CASTEiJ_G0028499.1 mouse_genomes_project 5 27710206 27728162 + MGP_CASTEiJ_P0070858 1700001C02Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070859.1 MGP_CASTEiJ_G0028499.1 mouse_genomes_project 5 27710210 27728206 + MGP_CASTEiJ_P0070859 1700001C02Rik protein_coding protein_coding MGP_CASTEiJ_T0070860.1 MGP_CASTEiJ_G0028499.1 mouse_genomes_project 5 27710235 27728185 + MGP_CASTEiJ_P0070860 1700001C02Rik protein_coding protein_coding MGP_CASTEiJ_T0072606.1 MGP_CASTEiJ_G0028790.1 mouse_genomes_project 5 87211965 87225756 - MGP_CASTEiJ_P0072606 Ugt2a3 protein_coding protein_coding MGP_CASTEiJ_T0101125.1 MGP_CASTEiJ_G0038038.1 mouse_genomes_project 5 83319823 83319955 - Gm25765 snoRNA snoRNA MGP_CASTEiJ_T0072955.1 MGP_CASTEiJ_G0028882.1 mouse_genomes_project 5 97974172 97982851 + MGP_CASTEiJ_P0072955 Prdm8 protein_coding protein_coding MGP_CASTEiJ_T0075078.1 MGP_CASTEiJ_G0029274.1 mouse_genomes_project 5 137903201 137914912 - MGP_CASTEiJ_P0075078 Wbscr22 protein_coding protein_coding MGP_CASTEiJ_T0075079.1 MGP_CASTEiJ_G0029274.1 mouse_genomes_project 5 137903201 137907228 - MGP_CASTEiJ_P0075079 Wbscr22 protein_coding protein_coding MGP_CASTEiJ_T0075080.1 MGP_CASTEiJ_G0029274.1 mouse_genomes_project 5 137903203 137914324 - MGP_CASTEiJ_P0075080 Wbscr22 protein_coding protein_coding MGP_CASTEiJ_T0075081.1 MGP_CASTEiJ_G0029274.1 mouse_genomes_project 5 137903203 137915205 - MGP_CASTEiJ_P0075081 Wbscr22 protein_coding protein_coding MGP_CASTEiJ_T0075082.1 MGP_CASTEiJ_G0029274.1 mouse_genomes_project 5 137903529 137914285 - MGP_CASTEiJ_P0075082 Wbscr22 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075083.1 MGP_CASTEiJ_G0029274.1 mouse_genomes_project 5 137903531 137907028 - Wbscr22 protein_coding retained_intron MGP_CASTEiJ_T0075084.1 MGP_CASTEiJ_G0029274.1 mouse_genomes_project 5 137903577 137907320 - Wbscr22 protein_coding retained_intron MGP_CASTEiJ_T0075085.1 MGP_CASTEiJ_G0029274.1 mouse_genomes_project 5 137903869 137907214 - Wbscr22 protein_coding retained_intron MGP_CASTEiJ_T0075086.1 MGP_CASTEiJ_G0029274.1 mouse_genomes_project 5 137906349 137911756 - Wbscr22 protein_coding processed_transcript MGP_CASTEiJ_T0075087.1 MGP_CASTEiJ_G0029274.1 mouse_genomes_project 5 137906780 137914294 - Wbscr22 protein_coding retained_intron MGP_CASTEiJ_T0075088.1 MGP_CASTEiJ_G0029274.1 mouse_genomes_project 5 137907186 137911629 - Wbscr22 protein_coding retained_intron MGP_CASTEiJ_T0075089.1 MGP_CASTEiJ_G0029274.1 mouse_genomes_project 5 137909501 137914012 - MGP_CASTEiJ_P0075089 Wbscr22 protein_coding protein_coding MGP_CASTEiJ_T0075090.1 MGP_CASTEiJ_G0029274.1 mouse_genomes_project 5 137911548 137914336 - MGP_CASTEiJ_P0075090 Wbscr22 protein_coding protein_coding MGP_CASTEiJ_T0075091.1 MGP_CASTEiJ_G0029274.1 mouse_genomes_project 5 137913999 137914325 - Wbscr22 protein_coding processed_transcript MGP_CASTEiJ_T0075092.1 MGP_CASTEiJ_G0029274.1 mouse_genomes_project 5 137914402 137914895 - MGP_CASTEiJ_P0075092 Wbscr22 protein_coding protein_coding MGP_CASTEiJ_T0073795.1 MGP_CASTEiJ_G0029050.1 mouse_genomes_project 5 115976422 115982246 - MGP_CASTEiJ_P0073795 1500011B03Rik protein_coding protein_coding MGP_CASTEiJ_T0098972.1 MGP_CASTEiJ_G0035896.1 mouse_genomes_project 5 124421422 124423978 + Gm42829 sense_intronic sense_intronic MGP_CASTEiJ_T0075734.1 MGP_CASTEiJ_G0029403.1 mouse_genomes_project 5 144020589 144022441 - MGP_CASTEiJ_P0075734 Grifin protein_coding protein_coding MGP_CASTEiJ_T0075094.1 MGP_CASTEiJ_G0029276.1 mouse_genomes_project 5 137922814 137928181 - MGP_CASTEiJ_P0075094 Vps37d protein_coding protein_coding MGP_CASTEiJ_T0075095.1 MGP_CASTEiJ_G0029276.1 mouse_genomes_project 5 137922817 137928181 - MGP_CASTEiJ_P0075095 Vps37d protein_coding protein_coding MGP_CASTEiJ_T0007987.1 MGP_CASTEiJ_G0006524.1 mouse_genomes_project 5 84167374 84171184 + Gm43532 lincRNA lincRNA MGP_CASTEiJ_T0004511.1 MGP_CASTEiJ_G0003916.1 mouse_genomes_project 5 19423280 19424960 + Gm16110 antisense antisense MGP_CASTEiJ_T0072317.1 MGP_CASTEiJ_G0028732.1 mouse_genomes_project 5 72325703 72342409 - MGP_CASTEiJ_P0072317 Ociad2 protein_coding protein_coding MGP_CASTEiJ_T0072318.1 MGP_CASTEiJ_G0028732.1 mouse_genomes_project 5 72325705 72342490 - MGP_CASTEiJ_P0072318 Ociad2 protein_coding protein_coding MGP_CASTEiJ_T0072319.1 MGP_CASTEiJ_G0028732.1 mouse_genomes_project 5 72325705 72342487 - MGP_CASTEiJ_P0072319 Ociad2 protein_coding protein_coding MGP_CASTEiJ_T0072320.1 MGP_CASTEiJ_G0028732.1 mouse_genomes_project 5 72331143 72344586 - MGP_CASTEiJ_P0072320 Ociad2 protein_coding protein_coding MGP_CASTEiJ_T0014526.1 MGP_CASTEiJ_G0012689.1 mouse_genomes_project 5 75997394 75997834 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072307.1 MGP_CASTEiJ_G0028731.1 mouse_genomes_project 5 72294606 72317454 + MGP_CASTEiJ_P0072307 Ociad1 protein_coding protein_coding MGP_CASTEiJ_T0072308.1 MGP_CASTEiJ_G0028731.1 mouse_genomes_project 5 72294614 72317566 + MGP_CASTEiJ_P0072308 Ociad1 protein_coding protein_coding MGP_CASTEiJ_T0072309.1 MGP_CASTEiJ_G0028731.1 mouse_genomes_project 5 72294615 72312962 + MGP_CASTEiJ_P0072309 Ociad1 protein_coding protein_coding MGP_CASTEiJ_T0072310.1 MGP_CASTEiJ_G0028731.1 mouse_genomes_project 5 72294629 72308588 + MGP_CASTEiJ_P0072310 Ociad1 protein_coding protein_coding MGP_CASTEiJ_T0072311.1 MGP_CASTEiJ_G0028731.1 mouse_genomes_project 5 72294654 72317411 + MGP_CASTEiJ_P0072311 Ociad1 protein_coding protein_coding MGP_CASTEiJ_T0072312.1 MGP_CASTEiJ_G0028731.1 mouse_genomes_project 5 72294663 72314013 + MGP_CASTEiJ_P0072312 Ociad1 protein_coding protein_coding MGP_CASTEiJ_T0072313.1 MGP_CASTEiJ_G0028731.1 mouse_genomes_project 5 72294717 72317438 + MGP_CASTEiJ_P0072313 Ociad1 protein_coding protein_coding MGP_CASTEiJ_T0072314.1 MGP_CASTEiJ_G0028731.1 mouse_genomes_project 5 72294875 72296788 + MGP_CASTEiJ_P0072314 Ociad1 protein_coding protein_coding MGP_CASTEiJ_T0072315.1 MGP_CASTEiJ_G0028731.1 mouse_genomes_project 5 72296811 72317438 + MGP_CASTEiJ_P0072315 Ociad1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072316.1 MGP_CASTEiJ_G0028731.1 mouse_genomes_project 5 72305930 72306963 + Ociad1 protein_coding retained_intron MGP_CASTEiJ_T0008120.1 MGP_CASTEiJ_G0006616.1 mouse_genomes_project 5 118030370 118239731 - Gm43122 lincRNA lincRNA MGP_CASTEiJ_T0008122.1 MGP_CASTEiJ_G0006616.1 mouse_genomes_project 5 118227431 118239765 - Gm43122 lincRNA lincRNA MGP_CASTEiJ_T0072800.1 MGP_CASTEiJ_G0028851.1 mouse_genomes_project 5 92216575 92249187 - MGP_CASTEiJ_P0072800 G3bp2 protein_coding protein_coding MGP_CASTEiJ_T0072801.1 MGP_CASTEiJ_G0028851.1 mouse_genomes_project 5 92216593 92249349 - MGP_CASTEiJ_P0072801 G3bp2 protein_coding protein_coding MGP_CASTEiJ_T0072802.1 MGP_CASTEiJ_G0028851.1 mouse_genomes_project 5 92218146 92248868 - MGP_CASTEiJ_P0072802 G3bp2 protein_coding protein_coding MGP_CASTEiJ_T0072803.1 MGP_CASTEiJ_G0028851.1 mouse_genomes_project 5 92218146 92249143 - MGP_CASTEiJ_P0072803 G3bp2 protein_coding protein_coding MGP_CASTEiJ_T0072804.1 MGP_CASTEiJ_G0028851.1 mouse_genomes_project 5 92218929 92249288 - MGP_CASTEiJ_P0072804 G3bp2 protein_coding protein_coding MGP_CASTEiJ_T0072805.1 MGP_CASTEiJ_G0028851.1 mouse_genomes_project 5 92220790 92231922 - G3bp2 protein_coding processed_transcript MGP_CASTEiJ_T0072806.1 MGP_CASTEiJ_G0028851.1 mouse_genomes_project 5 92222213 92231913 - G3bp2 protein_coding retained_intron MGP_CASTEiJ_T0072807.1 MGP_CASTEiJ_G0028851.1 mouse_genomes_project 5 92230915 92239232 - MGP_CASTEiJ_P0072807 G3bp2 protein_coding protein_coding MGP_CASTEiJ_T0072808.1 MGP_CASTEiJ_G0028851.1 mouse_genomes_project 5 92232650 92248893 - MGP_CASTEiJ_P0072808 G3bp2 protein_coding protein_coding MGP_CASTEiJ_T0072809.1 MGP_CASTEiJ_G0028851.1 mouse_genomes_project 5 92235018 92249347 - G3bp2 protein_coding retained_intron MGP_CASTEiJ_T0010360.1 MGP_CASTEiJ_G0008548.1 mouse_genomes_project 5 536037 536144 + Gm26238 miRNA miRNA MGP_CASTEiJ_T0071175.1 MGP_CASTEiJ_G0028545.1 mouse_genomes_project 5 30162650 30185433 - protein_coding retained_intron MGP_CASTEiJ_T0074076.1 MGP_CASTEiJ_G0029107.1 mouse_genomes_project 5 122207516 122214808 + MGP_CASTEiJ_P0074076 Sds protein_coding protein_coding MGP_CASTEiJ_T0074077.1 MGP_CASTEiJ_G0029107.1 mouse_genomes_project 5 122207521 122214808 + MGP_CASTEiJ_P0074077 Sds protein_coding protein_coding MGP_CASTEiJ_T0074078.1 MGP_CASTEiJ_G0029107.1 mouse_genomes_project 5 122209787 122211588 + MGP_CASTEiJ_P0074078 Sds protein_coding protein_coding MGP_CASTEiJ_T0074079.1 MGP_CASTEiJ_G0029107.1 mouse_genomes_project 5 122211263 122211786 + Sds protein_coding retained_intron MGP_CASTEiJ_T0072004.1 MGP_CASTEiJ_G0028683.1 mouse_genomes_project 5 63996462 64037718 + MGP_CASTEiJ_P0072004 Klb protein_coding protein_coding MGP_CASTEiJ_T0072005.1 MGP_CASTEiJ_G0028683.1 mouse_genomes_project 5 63996555 63998394 + Klb protein_coding retained_intron MGP_CASTEiJ_T0072006.1 MGP_CASTEiJ_G0028683.1 mouse_genomes_project 5 63996556 64033282 + MGP_CASTEiJ_P0072006 Klb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001771.1 MGP_CASTEiJ_G0001693.1 mouse_genomes_project 5 130671558 130674783 - TEC TEC MGP_CASTEiJ_T0007954.1 MGP_CASTEiJ_G0006499.1 mouse_genomes_project 5 71429493 71430393 - AU023070 lincRNA lincRNA MGP_CASTEiJ_T0072420.1 MGP_CASTEiJ_G0028750.1 mouse_genomes_project 5 75421466 75513468 - MGP_CASTEiJ_P0072420 Clock protein_coding protein_coding MGP_CASTEiJ_T0072421.1 MGP_CASTEiJ_G0028750.1 mouse_genomes_project 5 75423767 75513224 - MGP_CASTEiJ_P0072421 Clock protein_coding protein_coding MGP_CASTEiJ_T0072422.1 MGP_CASTEiJ_G0028750.1 mouse_genomes_project 5 75425443 75484158 - MGP_CASTEiJ_P0072422 Clock protein_coding protein_coding MGP_CASTEiJ_T0072423.1 MGP_CASTEiJ_G0028750.1 mouse_genomes_project 5 75438650 75513430 - Clock protein_coding retained_intron MGP_CASTEiJ_T0072424.1 MGP_CASTEiJ_G0028750.1 mouse_genomes_project 5 75458919 75513448 - Clock protein_coding processed_transcript MGP_CASTEiJ_T0072425.1 MGP_CASTEiJ_G0028750.1 mouse_genomes_project 5 75482097 75513448 - Clock protein_coding retained_intron MGP_CASTEiJ_T0014608.1 MGP_CASTEiJ_G0012771.1 mouse_genomes_project 5 111148184 111148503 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073823.1 MGP_CASTEiJ_G0029058.1 mouse_genomes_project 5 116137243 116158604 - MGP_CASTEiJ_P0073823 Hnf1a protein_coding protein_coding MGP_CASTEiJ_T0073824.1 MGP_CASTEiJ_G0029058.1 mouse_genomes_project 5 116138324 116158381 - MGP_CASTEiJ_P0073824 Hnf1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073825.1 MGP_CASTEiJ_G0029058.1 mouse_genomes_project 5 116140828 116158381 - MGP_CASTEiJ_P0073825 Hnf1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073826.1 MGP_CASTEiJ_G0029058.1 mouse_genomes_project 5 116145941 116158441 - MGP_CASTEiJ_P0073826 Hnf1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0073827.1 MGP_CASTEiJ_G0029058.1 mouse_genomes_project 5 116156243 116158631 - Hnf1a protein_coding retained_intron MGP_CASTEiJ_T0014664.1 MGP_CASTEiJ_G0012827.1 mouse_genomes_project 5 145853674 145854639 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074667.1 MGP_CASTEiJ_G0029203.1 mouse_genomes_project 5 126743204 126752128 - MGP_CASTEiJ_P0074667 Eif2b1 protein_coding protein_coding MGP_CASTEiJ_T0074668.1 MGP_CASTEiJ_G0029203.1 mouse_genomes_project 5 126744745 126747911 - Eif2b1 protein_coding retained_intron MGP_CASTEiJ_T0074669.1 MGP_CASTEiJ_G0029203.1 mouse_genomes_project 5 126746075 126752058 - MGP_CASTEiJ_P0074669 Eif2b1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074670.1 MGP_CASTEiJ_G0029203.1 mouse_genomes_project 5 126746725 126752072 - MGP_CASTEiJ_P0074670 Eif2b1 protein_coding protein_coding MGP_CASTEiJ_T0074671.1 MGP_CASTEiJ_G0029203.1 mouse_genomes_project 5 126749557 126751989 - MGP_CASTEiJ_P0074671 Eif2b1 protein_coding protein_coding MGP_CASTEiJ_T0074672.1 MGP_CASTEiJ_G0029203.1 mouse_genomes_project 5 126751511 126752029 - MGP_CASTEiJ_P0074672 Eif2b1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001437.1 MGP_CASTEiJ_G0001364.1 mouse_genomes_project 5 28862404 28863036 + TEC TEC MGP_CASTEiJ_T0071932.1 MGP_CASTEiJ_G0028667.1 mouse_genomes_project 5 60292690 60295039 + MGP_CASTEiJ_P0071932 G6pd2 protein_coding protein_coding MGP_CASTEiJ_T0073882.1 MGP_CASTEiJ_G0029073.1 mouse_genomes_project 5 116681389 116706206 + Msi1 protein_coding retained_intron MGP_CASTEiJ_T0073883.1 MGP_CASTEiJ_G0029073.1 mouse_genomes_project 5 116681438 116712955 + MGP_CASTEiJ_P0073883 Msi1 protein_coding protein_coding MGP_CASTEiJ_T0073884.1 MGP_CASTEiJ_G0029073.1 mouse_genomes_project 5 116684036 116708126 + MGP_CASTEiJ_P0073884 Msi1 protein_coding protein_coding MGP_CASTEiJ_T0073885.1 MGP_CASTEiJ_G0029073.1 mouse_genomes_project 5 116686830 116689062 + Msi1 protein_coding retained_intron MGP_CASTEiJ_T0073886.1 MGP_CASTEiJ_G0029073.1 mouse_genomes_project 5 116687163 116708119 + Msi1 protein_coding retained_intron MGP_CASTEiJ_T0073887.1 MGP_CASTEiJ_G0029073.1 mouse_genomes_project 5 116687712 116699002 + Msi1 protein_coding retained_intron MGP_CASTEiJ_T0073888.1 MGP_CASTEiJ_G0029073.1 mouse_genomes_project 5 116688406 116708103 + MGP_CASTEiJ_P0073888 Msi1 protein_coding protein_coding MGP_CASTEiJ_T0073889.1 MGP_CASTEiJ_G0029073.1 mouse_genomes_project 5 116688908 116699224 + Msi1 protein_coding retained_intron MGP_CASTEiJ_T0001695.1 MGP_CASTEiJ_G0001618.1 mouse_genomes_project 5 112026351 112028715 + TEC TEC MGP_CASTEiJ_T0070596.1 MGP_CASTEiJ_G0028448.1 mouse_genomes_project 5 21503239 21511213 - MGP_CASTEiJ_P0070596 Atg9b protein_coding protein_coding MGP_CASTEiJ_T0070597.1 MGP_CASTEiJ_G0028448.1 mouse_genomes_project 5 21503679 21509705 - Atg9b protein_coding processed_transcript MGP_CASTEiJ_T0070598.1 MGP_CASTEiJ_G0028448.1 mouse_genomes_project 5 21506170 21507032 - Atg9b protein_coding processed_transcript MGP_CASTEiJ_T0075816.1 MGP_CASTEiJ_G0029421.1 mouse_genomes_project 5 146562082 146566901 - MGP_CASTEiJ_P0075816 Actb protein_coding protein_coding MGP_CASTEiJ_T0075817.1 MGP_CASTEiJ_G0029421.1 mouse_genomes_project 5 146563802 146566849 - MGP_CASTEiJ_P0075817 Actb protein_coding protein_coding MGP_CASTEiJ_T0075818.1 MGP_CASTEiJ_G0029421.1 mouse_genomes_project 5 146564502 146565973 - MGP_CASTEiJ_P0075818 Actb protein_coding protein_coding MGP_CASTEiJ_T0075819.1 MGP_CASTEiJ_G0029421.1 mouse_genomes_project 5 146564546 146566872 - Actb protein_coding processed_transcript MGP_CASTEiJ_T0075820.1 MGP_CASTEiJ_G0029421.1 mouse_genomes_project 5 146564823 146566869 - MGP_CASTEiJ_P0075820 Actb protein_coding protein_coding MGP_CASTEiJ_T0075821.1 MGP_CASTEiJ_G0029421.1 mouse_genomes_project 5 146564856 146566089 - MGP_CASTEiJ_P0075821 Actb protein_coding protein_coding MGP_CASTEiJ_T0075822.1 MGP_CASTEiJ_G0029421.1 mouse_genomes_project 5 146564917 146566819 - Actb protein_coding retained_intron MGP_CASTEiJ_T0075823.1 MGP_CASTEiJ_G0029421.1 mouse_genomes_project 5 146565024 146566841 - Actb protein_coding retained_intron MGP_CASTEiJ_T0001671.1 MGP_CASTEiJ_G0001594.1 mouse_genomes_project 5 101805366 101807932 + TEC TEC MGP_CASTEiJ_T0099879.1 MGP_CASTEiJ_G0036792.1 mouse_genomes_project 5 58900481 58900589 - Gm23331 snRNA snRNA MGP_CASTEiJ_T0073878.1 MGP_CASTEiJ_G0029070.1 mouse_genomes_project 5 116562422 116570253 - MGP_CASTEiJ_P0073878 Gatc protein_coding protein_coding MGP_CASTEiJ_T0007979.1 MGP_CASTEiJ_G0006519.1 mouse_genomes_project 5 76422538 76424310 - Gm42757 lincRNA lincRNA MGP_CASTEiJ_T0076104.1 MGP_CASTEiJ_G0029486.1 mouse_genomes_project 5 151512317 151519759 - MGP_CASTEiJ_P0076104 Urad protein_coding protein_coding MGP_CASTEiJ_T0075034.1 MGP_CASTEiJ_G0029264.1 mouse_genomes_project 5 137437278 137454989 - MGP_CASTEiJ_P0075034 Eif4h protein_coding protein_coding MGP_CASTEiJ_T0075035.1 MGP_CASTEiJ_G0029264.1 mouse_genomes_project 5 137437435 137454846 - MGP_CASTEiJ_P0075035 Eif4h protein_coding protein_coding MGP_CASTEiJ_T0075036.1 MGP_CASTEiJ_G0029264.1 mouse_genomes_project 5 137441482 137454824 - Eif4h protein_coding retained_intron MGP_CASTEiJ_T0075037.1 MGP_CASTEiJ_G0029264.1 mouse_genomes_project 5 137442483 137454801 - Eif4h protein_coding retained_intron MGP_CASTEiJ_T0075038.1 MGP_CASTEiJ_G0029264.1 mouse_genomes_project 5 137452958 137454809 - Eif4h protein_coding retained_intron MGP_CASTEiJ_T0071327.1 MGP_CASTEiJ_G0028570.1 mouse_genomes_project 5 31770408 31801051 + MGP_CASTEiJ_P0071327 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0008058.1 MGP_CASTEiJ_G0006581.1 mouse_genomes_project 5 109033674 109034612 - Gm42518 lincRNA lincRNA MGP_CASTEiJ_T0014660.1 MGP_CASTEiJ_G0012823.1 mouse_genomes_project 5 142606400 142608231 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008212.1 MGP_CASTEiJ_G0006675.1 mouse_genomes_project 5 140546474 140554105 + Gm8066 lincRNA lincRNA MGP_CASTEiJ_T0008208.1 MGP_CASTEiJ_G0006671.1 mouse_genomes_project 5 140181618 140199412 - lincRNA lincRNA MGP_CASTEiJ_T0001542.1 MGP_CASTEiJ_G0001467.1 mouse_genomes_project 5 52937665 52940391 + TEC TEC MGP_CASTEiJ_T0071352.1 MGP_CASTEiJ_G0028574.1 mouse_genomes_project 5 32006200 32033937 + MGP_CASTEiJ_P0071352 Sh3bp2 protein_coding protein_coding MGP_CASTEiJ_T0071353.1 MGP_CASTEiJ_G0028574.1 mouse_genomes_project 5 32006208 32045893 + MGP_CASTEiJ_P0071353 Sh3bp2 protein_coding protein_coding MGP_CASTEiJ_T0071354.1 MGP_CASTEiJ_G0028574.1 mouse_genomes_project 5 32025451 32039950 + Sh3bp2 protein_coding retained_intron MGP_CASTEiJ_T0071355.1 MGP_CASTEiJ_G0028574.1 mouse_genomes_project 5 32025451 32034990 + MGP_CASTEiJ_P0071355 Sh3bp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071356.1 MGP_CASTEiJ_G0028574.1 mouse_genomes_project 5 32025451 32045877 + MGP_CASTEiJ_P0071356 Sh3bp2 protein_coding protein_coding MGP_CASTEiJ_T0071357.1 MGP_CASTEiJ_G0028574.1 mouse_genomes_project 5 32031668 32045877 + MGP_CASTEiJ_P0071357 Sh3bp2 protein_coding protein_coding MGP_CASTEiJ_T0071358.1 MGP_CASTEiJ_G0028574.1 mouse_genomes_project 5 32031780 32045890 + MGP_CASTEiJ_P0071358 Sh3bp2 protein_coding protein_coding MGP_CASTEiJ_T0071359.1 MGP_CASTEiJ_G0028574.1 mouse_genomes_project 5 32033781 32035036 + Sh3bp2 protein_coding retained_intron MGP_CASTEiJ_T0001444.1 MGP_CASTEiJ_G0001370.1 mouse_genomes_project 5 29974955 29979763 - TEC TEC MGP_CASTEiJ_T0099869.1 MGP_CASTEiJ_G0036782.1 mouse_genomes_project 5 27764121 27764228 - Gm25666 snRNA snRNA MGP_CASTEiJ_T0071976.1 MGP_CASTEiJ_G0028677.1 mouse_genomes_project 5 63563682 63579001 - MGP_CASTEiJ_P0071976 Tlr6 protein_coding protein_coding MGP_CASTEiJ_T0071977.1 MGP_CASTEiJ_G0028677.1 mouse_genomes_project 5 63574177 63579051 - MGP_CASTEiJ_P0071977 Tlr6 protein_coding protein_coding MGP_CASTEiJ_T0076201.1 MGP_CASTEiJ_G0029500.1 mouse_genomes_project 5 153808841 153828715 + MGP_CASTEiJ_P0076201 Medag protein_coding protein_coding MGP_CASTEiJ_T0076202.1 MGP_CASTEiJ_G0029500.1 mouse_genomes_project 5 153808864 153819884 + Medag protein_coding retained_intron MGP_CASTEiJ_T0076203.1 MGP_CASTEiJ_G0029500.1 mouse_genomes_project 5 153810904 153828687 + MGP_CASTEiJ_P0076203 Medag protein_coding protein_coding MGP_CASTEiJ_T0014602.1 MGP_CASTEiJ_G0012765.1 mouse_genomes_project 5 109512435 109646096 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101149.1 MGP_CASTEiJ_G0038062.1 mouse_genomes_project 5 151388299 151388429 - Gm24556 snoRNA snoRNA MGP_CASTEiJ_T0074421.1 MGP_CASTEiJ_G0029164.1 mouse_genomes_project 5 125096933 125108898 - MGP_CASTEiJ_P0074421 Morn3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074422.1 MGP_CASTEiJ_G0029164.1 mouse_genomes_project 5 125096953 125099811 - MGP_CASTEiJ_P0074422 Morn3 protein_coding protein_coding MGP_CASTEiJ_T0074423.1 MGP_CASTEiJ_G0029164.1 mouse_genomes_project 5 125097026 125099819 - MGP_CASTEiJ_P0074423 Morn3 protein_coding protein_coding MGP_CASTEiJ_T0074424.1 MGP_CASTEiJ_G0029164.1 mouse_genomes_project 5 125099389 125108657 - MGP_CASTEiJ_P0074424 Morn3 protein_coding protein_coding MGP_CASTEiJ_T0074425.1 MGP_CASTEiJ_G0029164.1 mouse_genomes_project 5 125099411 125108887 - MGP_CASTEiJ_P0074425 Morn3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0014542.1 MGP_CASTEiJ_G0012705.1 mouse_genomes_project 5 87082340 87083892 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001668.1 MGP_CASTEiJ_G0001591.1 mouse_genomes_project 5 100749035 100752156 + TEC TEC MGP_CASTEiJ_T0001516.1 MGP_CASTEiJ_G0001441.1 mouse_genomes_project 5 46964049 46964689 - TEC TEC MGP_CASTEiJ_T0014505.1 MGP_CASTEiJ_G0012668.1 mouse_genomes_project 5 65129655 65129923 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007866.1 MGP_CASTEiJ_G0006437.1 mouse_genomes_project 5 22876291 22876629 - Gm10062 lincRNA lincRNA MGP_CASTEiJ_T0007868.1 MGP_CASTEiJ_G0006437.1 mouse_genomes_project 5 22876298 22877876 - Gm10062 lincRNA lincRNA MGP_CASTEiJ_T0014688.1 MGP_CASTEiJ_G0012851.1 mouse_genomes_project 5 151657196 151657418 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074578.1 MGP_CASTEiJ_G0029190.1 mouse_genomes_project 5 126256333 126259071 + MGP_CASTEiJ_P0074578 Ogfod2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0074579.1 MGP_CASTEiJ_G0029190.1 mouse_genomes_project 5 126256333 126258981 + MGP_CASTEiJ_P0074579 Ogfod2 protein_coding protein_coding MGP_CASTEiJ_T0074580.1 MGP_CASTEiJ_G0029190.1 mouse_genomes_project 5 126256344 126259088 + Ogfod2 protein_coding retained_intron MGP_CASTEiJ_T0074581.1 MGP_CASTEiJ_G0029190.1 mouse_genomes_project 5 126256348 126258509 + MGP_CASTEiJ_P0074581 Ogfod2 protein_coding protein_coding MGP_CASTEiJ_T0074582.1 MGP_CASTEiJ_G0029190.1 mouse_genomes_project 5 126256363 126258377 + Ogfod2 protein_coding retained_intron MGP_CASTEiJ_T0074583.1 MGP_CASTEiJ_G0029190.1 mouse_genomes_project 5 126256363 126258465 + MGP_CASTEiJ_P0074583 Ogfod2 protein_coding protein_coding MGP_CASTEiJ_T0074584.1 MGP_CASTEiJ_G0029190.1 mouse_genomes_project 5 126256380 126258769 + MGP_CASTEiJ_P0074584 Ogfod2 protein_coding protein_coding MGP_CASTEiJ_T0074585.1 MGP_CASTEiJ_G0029190.1 mouse_genomes_project 5 126256454 126258970 + MGP_CASTEiJ_P0074585 Ogfod2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074586.1 MGP_CASTEiJ_G0029190.1 mouse_genomes_project 5 126256838 126258220 + Ogfod2 protein_coding retained_intron MGP_CASTEiJ_T0074587.1 MGP_CASTEiJ_G0029190.1 mouse_genomes_project 5 126257304 126258885 + Ogfod2 protein_coding retained_intron MGP_CASTEiJ_T0001509.1 MGP_CASTEiJ_G0001434.1 mouse_genomes_project 5 46860804 46862117 - TEC TEC MGP_CASTEiJ_T0010412.1 MGP_CASTEiJ_G0008600.1 mouse_genomes_project 5 123778484 123778549 - Mir7031 miRNA miRNA MGP_CASTEiJ_T0008184.1 MGP_CASTEiJ_G0006657.1 mouse_genomes_project 5 129900541 129901892 + Gm42980 lincRNA lincRNA MGP_CASTEiJ_T0098973.1 MGP_CASTEiJ_G0035897.1 mouse_genomes_project 5 131187007 131188007 - Gm42871 sense_intronic sense_intronic MGP_CASTEiJ_T0073799.1 MGP_CASTEiJ_G0029054.1 mouse_genomes_project 5 116041688 116044787 - MGP_CASTEiJ_P0073799 Gm9936 protein_coding protein_coding MGP_CASTEiJ_T0099894.1 MGP_CASTEiJ_G0036807.1 mouse_genomes_project 5 82443398 82443495 + Gm24129 snRNA snRNA MGP_CASTEiJ_T0001673.1 MGP_CASTEiJ_G0001596.1 mouse_genomes_project 5 101987233 101988578 + TEC TEC MGP_CASTEiJ_T0004566.1 MGP_CASTEiJ_G0003959.1 mouse_genomes_project 5 51619010 51622454 - Gm10441 antisense antisense MGP_CASTEiJ_T0014407.1 MGP_CASTEiJ_G0012570.1 mouse_genomes_project 5 23512000 23513812 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014503.1 MGP_CASTEiJ_G0012666.1 mouse_genomes_project 5 62887115 62887614 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010397.1 MGP_CASTEiJ_G0008585.1 mouse_genomes_project 5 92994089 92994201 - Mir1961 miRNA miRNA MGP_CASTEiJ_T0001411.1 MGP_CASTEiJ_G0001340.1 mouse_genomes_project 5 16140553 16143702 - TEC TEC MGP_CASTEiJ_T0072569.1 MGP_CASTEiJ_G0028774.1 mouse_genomes_project 5 85982784 86003696 - MGP_CASTEiJ_P0072569 Gnrhr protein_coding protein_coding MGP_CASTEiJ_T0072570.1 MGP_CASTEiJ_G0028774.1 mouse_genomes_project 5 85984023 86003665 - MGP_CASTEiJ_P0072570 Gnrhr protein_coding protein_coding MGP_CASTEiJ_T0072571.1 MGP_CASTEiJ_G0028774.1 mouse_genomes_project 5 85986577 86003641 - MGP_CASTEiJ_P0072571 Gnrhr protein_coding protein_coding MGP_CASTEiJ_T0004514.1 MGP_CASTEiJ_G0003919.1 mouse_genomes_project 5 21483680 21502643 - Gm15587 antisense antisense MGP_CASTEiJ_T0004515.1 MGP_CASTEiJ_G0003919.1 mouse_genomes_project 5 21486689 21502675 - Gm15587 antisense antisense MGP_CASTEiJ_T0074660.1 MGP_CASTEiJ_G0029202.1 mouse_genomes_project 5 126726719 126742652 + MGP_CASTEiJ_P0074660 Ddx55 protein_coding protein_coding MGP_CASTEiJ_T0074661.1 MGP_CASTEiJ_G0029202.1 mouse_genomes_project 5 126726724 126740945 + MGP_CASTEiJ_P0074661 Ddx55 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074662.1 MGP_CASTEiJ_G0029202.1 mouse_genomes_project 5 126726733 126741722 + MGP_CASTEiJ_P0074662 Ddx55 protein_coding protein_coding MGP_CASTEiJ_T0074663.1 MGP_CASTEiJ_G0029202.1 mouse_genomes_project 5 126726751 126734551 + Ddx55 protein_coding processed_transcript MGP_CASTEiJ_T0074664.1 MGP_CASTEiJ_G0029202.1 mouse_genomes_project 5 126726813 126734607 + Ddx55 protein_coding processed_transcript MGP_CASTEiJ_T0074665.1 MGP_CASTEiJ_G0029202.1 mouse_genomes_project 5 126729511 126730944 + Ddx55 protein_coding retained_intron MGP_CASTEiJ_T0074666.1 MGP_CASTEiJ_G0029202.1 mouse_genomes_project 5 126735721 126740865 + Ddx55 protein_coding processed_transcript MGP_CASTEiJ_T0007964.1 MGP_CASTEiJ_G0006506.1 mouse_genomes_project 5 73830095 73832886 - Gm15985 lincRNA lincRNA MGP_CASTEiJ_T0007996.1 MGP_CASTEiJ_G0006533.1 mouse_genomes_project 5 91898832 91903375 - Gm28271 lincRNA lincRNA MGP_CASTEiJ_T0101783.1 MGP_CASTEiJ_G0038563.1 mouse_genomes_project 5 29905065 29917432 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0008145.1 MGP_CASTEiJ_G0006636.1 mouse_genomes_project 5 125109254 125314346 - lincRNA lincRNA MGP_CASTEiJ_T0075162.1 MGP_CASTEiJ_G0029291.1 mouse_genomes_project 5 138579077 138581249 - MGP_CASTEiJ_P0075162 protein_coding protein_coding MGP_CASTEiJ_T0071699.1 MGP_CASTEiJ_G0028631.1 mouse_genomes_project 5 41364232 41451982 + MGP_CASTEiJ_P0071699 Cc2d2a protein_coding protein_coding MGP_CASTEiJ_T0071700.1 MGP_CASTEiJ_G0028631.1 mouse_genomes_project 5 41375598 41397843 + Cc2d2a protein_coding retained_intron MGP_CASTEiJ_T0071701.1 MGP_CASTEiJ_G0028631.1 mouse_genomes_project 5 41375598 41450331 + MGP_CASTEiJ_P0071701 Cc2d2a protein_coding protein_coding MGP_CASTEiJ_T0071702.1 MGP_CASTEiJ_G0028631.1 mouse_genomes_project 5 41405420 41426017 + Cc2d2a protein_coding retained_intron MGP_CASTEiJ_T0004740.1 MGP_CASTEiJ_G0004085.1 mouse_genomes_project 5 143480948 143492299 + Gm16122 antisense antisense MGP_CASTEiJ_T0072758.1 MGP_CASTEiJ_G0028836.1 mouse_genomes_project 5 90886833 90888377 + MGP_CASTEiJ_P0072758 Ppbp protein_coding protein_coding MGP_CASTEiJ_T0014414.1 MGP_CASTEiJ_G0012577.1 mouse_genomes_project 5 25190160 25191466 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101127.1 MGP_CASTEiJ_G0038040.1 mouse_genomes_project 5 87668228 87668351 + Gm25066 snoRNA snoRNA MGP_CASTEiJ_T0001595.1 MGP_CASTEiJ_G0001519.1 mouse_genomes_project 5 65312605 65314513 - TEC TEC MGP_CASTEiJ_T0070837.1 MGP_CASTEiJ_G0028495.1 mouse_genomes_project 5 27461954 27474118 - MGP_CASTEiJ_P0070837 Adgrf3 protein_coding protein_coding MGP_CASTEiJ_T0070838.1 MGP_CASTEiJ_G0028495.1 mouse_genomes_project 5 27461958 27464937 - MGP_CASTEiJ_P0070838 Adgrf3 protein_coding protein_coding MGP_CASTEiJ_T0070839.1 MGP_CASTEiJ_G0028495.1 mouse_genomes_project 5 27470819 27472972 - Adgrf3 protein_coding processed_transcript MGP_CASTEiJ_T0014471.1 MGP_CASTEiJ_G0012634.1 mouse_genomes_project 5 53144893 53145722 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001753.1 MGP_CASTEiJ_G0001676.1 mouse_genomes_project 5 125492677 125494818 + TEC TEC MGP_CASTEiJ_T0007933.1 MGP_CASTEiJ_G0006483.1 mouse_genomes_project 5 52478658 52488414 + Gm10440 lincRNA lincRNA MGP_CASTEiJ_T0071459.1 MGP_CASTEiJ_G0028589.1 mouse_genomes_project 5 33134531 33166934 + MGP_CASTEiJ_P0071459 Acox3 protein_coding protein_coding MGP_CASTEiJ_T0071460.1 MGP_CASTEiJ_G0028589.1 mouse_genomes_project 5 33134542 33165710 + MGP_CASTEiJ_P0071460 Acox3 protein_coding protein_coding MGP_CASTEiJ_T0071461.1 MGP_CASTEiJ_G0028589.1 mouse_genomes_project 5 33134569 33140218 + MGP_CASTEiJ_P0071461 Acox3 protein_coding protein_coding MGP_CASTEiJ_T0071462.1 MGP_CASTEiJ_G0028589.1 mouse_genomes_project 5 33134570 33168298 + MGP_CASTEiJ_P0071462 Acox3 protein_coding protein_coding MGP_CASTEiJ_T0071463.1 MGP_CASTEiJ_G0028589.1 mouse_genomes_project 5 33134583 33138914 + Acox3 protein_coding retained_intron MGP_CASTEiJ_T0071464.1 MGP_CASTEiJ_G0028589.1 mouse_genomes_project 5 33134593 33164980 + MGP_CASTEiJ_P0071464 Acox3 protein_coding protein_coding MGP_CASTEiJ_T0071465.1 MGP_CASTEiJ_G0028589.1 mouse_genomes_project 5 33135014 33164973 + MGP_CASTEiJ_P0071465 Acox3 protein_coding protein_coding MGP_CASTEiJ_T0071466.1 MGP_CASTEiJ_G0028589.1 mouse_genomes_project 5 33153043 33161443 + MGP_CASTEiJ_P0071466 Acox3 protein_coding protein_coding MGP_CASTEiJ_T0071467.1 MGP_CASTEiJ_G0028589.1 mouse_genomes_project 5 33158332 33163028 + Acox3 protein_coding retained_intron MGP_CASTEiJ_T0071468.1 MGP_CASTEiJ_G0028589.1 mouse_genomes_project 5 33163207 33164991 + Acox3 protein_coding retained_intron MGP_CASTEiJ_T0008017.1 MGP_CASTEiJ_G0006551.1 mouse_genomes_project 5 99608323 99634802 - Gm43248 lincRNA lincRNA MGP_CASTEiJ_T0008018.1 MGP_CASTEiJ_G0006551.1 mouse_genomes_project 5 99621065 99634337 - Gm43248 lincRNA lincRNA MGP_CASTEiJ_T0070778.1 MGP_CASTEiJ_G0028483.1 mouse_genomes_project 5 26421127 26578712 - MGP_CASTEiJ_P0070778 Lmbr1 protein_coding protein_coding MGP_CASTEiJ_T0070779.1 MGP_CASTEiJ_G0028483.1 mouse_genomes_project 5 26421139 26578718 - MGP_CASTEiJ_P0070779 Lmbr1 protein_coding protein_coding MGP_CASTEiJ_T0070780.1 MGP_CASTEiJ_G0028483.1 mouse_genomes_project 5 26423475 26578630 - MGP_CASTEiJ_P0070780 Lmbr1 protein_coding protein_coding MGP_CASTEiJ_T0070781.1 MGP_CASTEiJ_G0028483.1 mouse_genomes_project 5 26423729 26578712 - MGP_CASTEiJ_P0070781 Lmbr1 protein_coding protein_coding MGP_CASTEiJ_T0070782.1 MGP_CASTEiJ_G0028483.1 mouse_genomes_project 5 26424197 26578658 - MGP_CASTEiJ_P0070782 Lmbr1 protein_coding protein_coding MGP_CASTEiJ_T0070783.1 MGP_CASTEiJ_G0028483.1 mouse_genomes_project 5 26426375 26492731 - MGP_CASTEiJ_P0070783 Lmbr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070784.1 MGP_CASTEiJ_G0028483.1 mouse_genomes_project 5 26451055 26561894 - Lmbr1 protein_coding processed_transcript MGP_CASTEiJ_T0008236.1 MGP_CASTEiJ_G0006696.1 mouse_genomes_project 5 153019158 153026049 + Gm36186 lincRNA lincRNA MGP_CASTEiJ_T0101115.1 MGP_CASTEiJ_G0038028.1 mouse_genomes_project 5 56706037 56706171 + Gm22536 snoRNA snoRNA MGP_CASTEiJ_T0075841.1 MGP_CASTEiJ_G0029424.1 mouse_genomes_project 5 146859305 146867834 - MGP_CASTEiJ_P0075841 Rbak protein_coding protein_coding MGP_CASTEiJ_T0075842.1 MGP_CASTEiJ_G0029424.1 mouse_genomes_project 5 146859305 146867879 - MGP_CASTEiJ_P0075842 Rbak protein_coding protein_coding MGP_CASTEiJ_T0075843.1 MGP_CASTEiJ_G0029424.1 mouse_genomes_project 5 146859306 146863860 - Rbak protein_coding retained_intron MGP_CASTEiJ_T0075844.1 MGP_CASTEiJ_G0029424.1 mouse_genomes_project 5 146866068 146867836 - Rbak protein_coding retained_intron MGP_CASTEiJ_T0099860.1 MGP_CASTEiJ_G0036773.1 mouse_genomes_project 5 16472022 16472125 - Gm25335 snRNA snRNA MGP_CASTEiJ_T0001409.1 MGP_CASTEiJ_G0001338.1 mouse_genomes_project 5 13408388 13409379 + TEC TEC MGP_CASTEiJ_T0001617.1 MGP_CASTEiJ_G0001541.1 mouse_genomes_project 5 68184780 68193356 - TEC TEC MGP_CASTEiJ_T0074351.1 MGP_CASTEiJ_G0029157.1 mouse_genomes_project 5 124675805 124710276 + MGP_CASTEiJ_P0074351 P2rx7 protein_coding protein_coding MGP_CASTEiJ_T0074352.1 MGP_CASTEiJ_G0029157.1 mouse_genomes_project 5 124675833 124717717 + MGP_CASTEiJ_P0074352 P2rx7 protein_coding protein_coding MGP_CASTEiJ_T0074353.1 MGP_CASTEiJ_G0029157.1 mouse_genomes_project 5 124675903 124688241 + MGP_CASTEiJ_P0074353 P2rx7 protein_coding protein_coding MGP_CASTEiJ_T0074354.1 MGP_CASTEiJ_G0029157.1 mouse_genomes_project 5 124675968 124710270 + MGP_CASTEiJ_P0074354 P2rx7 protein_coding protein_coding MGP_CASTEiJ_T0074355.1 MGP_CASTEiJ_G0029157.1 mouse_genomes_project 5 124676059 124681038 + P2rx7 protein_coding processed_transcript MGP_CASTEiJ_T0074356.1 MGP_CASTEiJ_G0029157.1 mouse_genomes_project 5 124683362 124707409 + P2rx7 protein_coding processed_transcript MGP_CASTEiJ_T0074357.1 MGP_CASTEiJ_G0029157.1 mouse_genomes_project 5 124707959 124709505 + P2rx7 protein_coding processed_transcript MGP_CASTEiJ_T0074358.1 MGP_CASTEiJ_G0029157.1 mouse_genomes_project 5 124708199 124710263 + P2rx7 protein_coding retained_intron MGP_CASTEiJ_T0014590.1 MGP_CASTEiJ_G0012753.1 mouse_genomes_project 5 106892310 106892633 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001758.1 MGP_CASTEiJ_G0001681.1 mouse_genomes_project 5 126141474 126142982 + TEC TEC MGP_CASTEiJ_T0004699.1 MGP_CASTEiJ_G0004055.1 mouse_genomes_project 5 126379845 126387255 + Pitpnm2os1 antisense antisense MGP_CASTEiJ_T0004546.1 MGP_CASTEiJ_G0003946.1 mouse_genomes_project 5 40852031 40932251 - Gm7854 antisense antisense MGP_CASTEiJ_T0004547.1 MGP_CASTEiJ_G0003946.1 mouse_genomes_project 5 40852031 40932621 - Gm7854 antisense antisense MGP_CASTEiJ_T0004548.1 MGP_CASTEiJ_G0003946.1 mouse_genomes_project 5 40932267 40932618 - Gm7854 antisense antisense MGP_CASTEiJ_T0073539.1 MGP_CASTEiJ_G0029002.1 mouse_genomes_project 5 112210347 112264245 + MGP_CASTEiJ_P0073539 Pitpnb protein_coding protein_coding MGP_CASTEiJ_T0073540.1 MGP_CASTEiJ_G0029002.1 mouse_genomes_project 5 112210391 112264245 + MGP_CASTEiJ_P0073540 Pitpnb protein_coding protein_coding MGP_CASTEiJ_T0073541.1 MGP_CASTEiJ_G0029002.1 mouse_genomes_project 5 112210398 112264251 + MGP_CASTEiJ_P0073541 Pitpnb protein_coding unknown_likely_coding MGP_CASTEiJ_T0073542.1 MGP_CASTEiJ_G0029002.1 mouse_genomes_project 5 112226116 112258970 + Pitpnb protein_coding processed_transcript MGP_CASTEiJ_T0073543.1 MGP_CASTEiJ_G0029002.1 mouse_genomes_project 5 112254734 112259565 + Pitpnb protein_coding retained_intron MGP_CASTEiJ_T0001726.1 MGP_CASTEiJ_G0001649.1 mouse_genomes_project 5 120154438 120156854 + TEC TEC MGP_CASTEiJ_T0001506.1 MGP_CASTEiJ_G0001432.1 mouse_genomes_project 5 46804742 46808527 - TEC TEC MGP_CASTEiJ_T0001507.1 MGP_CASTEiJ_G0001432.1 mouse_genomes_project 5 46807647 46808021 - TEC pseudogene MGP_CASTEiJ_T0004578.1 MGP_CASTEiJ_G0003970.1 mouse_genomes_project 5 66501122 66505499 + Gm15478 antisense antisense MGP_CASTEiJ_T0071703.1 MGP_CASTEiJ_G0028632.1 mouse_genomes_project 5 41455547 41493077 - MGP_CASTEiJ_P0071703 Fbxl5 protein_coding protein_coding MGP_CASTEiJ_T0071704.1 MGP_CASTEiJ_G0028632.1 mouse_genomes_project 5 41455548 41493043 - MGP_CASTEiJ_P0071704 Fbxl5 protein_coding protein_coding MGP_CASTEiJ_T0071705.1 MGP_CASTEiJ_G0028632.1 mouse_genomes_project 5 41455556 41541581 - MGP_CASTEiJ_P0071705 Fbxl5 protein_coding protein_coding MGP_CASTEiJ_T0071706.1 MGP_CASTEiJ_G0028632.1 mouse_genomes_project 5 41456231 41492982 - MGP_CASTEiJ_P0071706 Fbxl5 protein_coding protein_coding MGP_CASTEiJ_T0071707.1 MGP_CASTEiJ_G0028632.1 mouse_genomes_project 5 41461582 41493036 - MGP_CASTEiJ_P0071707 Fbxl5 protein_coding protein_coding MGP_CASTEiJ_T0071708.1 MGP_CASTEiJ_G0028632.1 mouse_genomes_project 5 41466816 41493055 - MGP_CASTEiJ_P0071708 Fbxl5 protein_coding protein_coding MGP_CASTEiJ_T0071709.1 MGP_CASTEiJ_G0028632.1 mouse_genomes_project 5 41468784 41493071 - MGP_CASTEiJ_P0071709 Fbxl5 protein_coding protein_coding MGP_CASTEiJ_T0071710.1 MGP_CASTEiJ_G0028632.1 mouse_genomes_project 5 41469589 41470787 - Fbxl5 protein_coding retained_intron MGP_CASTEiJ_T0071711.1 MGP_CASTEiJ_G0028632.1 mouse_genomes_project 5 41471931 41493036 - Fbxl5 protein_coding retained_intron MGP_CASTEiJ_T0071712.1 MGP_CASTEiJ_G0028632.1 mouse_genomes_project 5 41473212 41493052 - Fbxl5 protein_coding retained_intron MGP_CASTEiJ_T0071713.1 MGP_CASTEiJ_G0028632.1 mouse_genomes_project 5 41473550 41493104 - MGP_CASTEiJ_P0071713 Fbxl5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071714.1 MGP_CASTEiJ_G0028632.1 mouse_genomes_project 5 41478988 41493034 - MGP_CASTEiJ_P0071714 Fbxl5 protein_coding protein_coding MGP_CASTEiJ_T0073063.1 MGP_CASTEiJ_G0028903.1 mouse_genomes_project 5 100756307 100772070 - MGP_CASTEiJ_P0073063 Fam175a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073064.1 MGP_CASTEiJ_G0028903.1 mouse_genomes_project 5 100756307 100772095 - MGP_CASTEiJ_P0073064 Fam175a protein_coding protein_coding MGP_CASTEiJ_T0073065.1 MGP_CASTEiJ_G0028903.1 mouse_genomes_project 5 100756307 100772073 - MGP_CASTEiJ_P0073065 Fam175a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073066.1 MGP_CASTEiJ_G0028903.1 mouse_genomes_project 5 100756307 100772070 - MGP_CASTEiJ_P0073066 Fam175a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073067.1 MGP_CASTEiJ_G0028903.1 mouse_genomes_project 5 100756318 100772070 - MGP_CASTEiJ_P0073067 Fam175a protein_coding protein_coding MGP_CASTEiJ_T0073068.1 MGP_CASTEiJ_G0028903.1 mouse_genomes_project 5 100757421 100758411 - Fam175a protein_coding retained_intron MGP_CASTEiJ_T0073069.1 MGP_CASTEiJ_G0028903.1 mouse_genomes_project 5 100760904 100772071 - MGP_CASTEiJ_P0073069 Fam175a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073070.1 MGP_CASTEiJ_G0028903.1 mouse_genomes_project 5 100768853 100772077 - Fam175a protein_coding retained_intron MGP_CASTEiJ_T0073071.1 MGP_CASTEiJ_G0028903.1 mouse_genomes_project 5 100769458 100772070 - Fam175a protein_coding retained_intron MGP_CASTEiJ_T0004762.1 MGP_CASTEiJ_G0004102.1 mouse_genomes_project 5 154772793 154790164 - Gm42556 antisense antisense MGP_CASTEiJ_T0075236.1 MGP_CASTEiJ_G0029305.1 mouse_genomes_project 5 139061884 139076564 - MGP_CASTEiJ_P0075236 Lrwd1 protein_coding protein_coding MGP_CASTEiJ_T0075237.1 MGP_CASTEiJ_G0029305.1 mouse_genomes_project 5 139062179 139076492 - Lrwd1 protein_coding retained_intron MGP_CASTEiJ_T0075238.1 MGP_CASTEiJ_G0029305.1 mouse_genomes_project 5 139062187 139066133 - Lrwd1 protein_coding retained_intron MGP_CASTEiJ_T0075239.1 MGP_CASTEiJ_G0029305.1 mouse_genomes_project 5 139062804 139070747 - MGP_CASTEiJ_P0075239 Lrwd1 protein_coding protein_coding MGP_CASTEiJ_T0075240.1 MGP_CASTEiJ_G0029305.1 mouse_genomes_project 5 139069957 139076513 - Lrwd1 protein_coding retained_intron MGP_CASTEiJ_T0075241.1 MGP_CASTEiJ_G0029305.1 mouse_genomes_project 5 139071183 139076493 - Lrwd1 protein_coding retained_intron MGP_CASTEiJ_T0075242.1 MGP_CASTEiJ_G0029305.1 mouse_genomes_project 5 139072175 139076552 - Lrwd1 protein_coding retained_intron MGP_CASTEiJ_T0075243.1 MGP_CASTEiJ_G0029305.1 mouse_genomes_project 5 139072803 139074379 - Lrwd1 protein_coding retained_intron MGP_CASTEiJ_T0075244.1 MGP_CASTEiJ_G0029305.1 mouse_genomes_project 5 139073532 139076488 - MGP_CASTEiJ_P0075244 Lrwd1 protein_coding protein_coding MGP_CASTEiJ_T0001644.1 MGP_CASTEiJ_G0001567.1 mouse_genomes_project 5 80827159 80830633 + TEC TEC MGP_CASTEiJ_T0076066.1 MGP_CASTEiJ_G0029475.1 mouse_genomes_project 5 150697215 150699224 - Gpr12 protein_coding retained_intron MGP_CASTEiJ_T0076067.1 MGP_CASTEiJ_G0029475.1 mouse_genomes_project 5 150697217 150700059 - MGP_CASTEiJ_P0076067 Gpr12 protein_coding protein_coding MGP_CASTEiJ_T0076068.1 MGP_CASTEiJ_G0029475.1 mouse_genomes_project 5 150697569 150699652 - MGP_CASTEiJ_P0076068 Gpr12 protein_coding protein_coding MGP_CASTEiJ_T0076069.1 MGP_CASTEiJ_G0029475.1 mouse_genomes_project 5 150698290 150699639 - MGP_CASTEiJ_P0076069 Gpr12 protein_coding protein_coding MGP_CASTEiJ_T0076070.1 MGP_CASTEiJ_G0029475.1 mouse_genomes_project 5 150698474 150699663 - MGP_CASTEiJ_P0076070 Gpr12 protein_coding protein_coding MGP_CASTEiJ_T0070861.1 MGP_CASTEiJ_G0028500.1 mouse_genomes_project 5 27729946 27800842 - MGP_CASTEiJ_P0070861 Cib4 protein_coding protein_coding MGP_CASTEiJ_T0001398.1 MGP_CASTEiJ_G0001327.1 mouse_genomes_project 5 10678286 10682310 + TEC TEC MGP_CASTEiJ_T0001490.1 MGP_CASTEiJ_G0001416.1 mouse_genomes_project 5 43597075 43599034 - TEC TEC MGP_CASTEiJ_T0075589.1 MGP_CASTEiJ_G0029373.1 mouse_genomes_project 5 141924116 141941625 + MGP_CASTEiJ_P0075589 A430033K04Rik protein_coding protein_coding MGP_CASTEiJ_T0075590.1 MGP_CASTEiJ_G0029373.1 mouse_genomes_project 5 141924133 141954362 + MGP_CASTEiJ_P0075590 A430033K04Rik protein_coding protein_coding MGP_CASTEiJ_T0075591.1 MGP_CASTEiJ_G0029373.1 mouse_genomes_project 5 141924151 141950733 + MGP_CASTEiJ_P0075591 A430033K04Rik protein_coding protein_coding MGP_CASTEiJ_T0070706.1 MGP_CASTEiJ_G0028467.1 mouse_genomes_project 5 22370536 22415242 + MGP_CASTEiJ_P0070706 Galntl5 protein_coding protein_coding MGP_CASTEiJ_T0070707.1 MGP_CASTEiJ_G0028467.1 mouse_genomes_project 5 22370578 22415240 + MGP_CASTEiJ_P0070707 Galntl5 protein_coding protein_coding MGP_CASTEiJ_T0075128.1 MGP_CASTEiJ_G0029284.1 mouse_genomes_project 5 138233207 138240739 + MGP_CASTEiJ_P0075128 Nsun5 protein_coding protein_coding MGP_CASTEiJ_T0075129.1 MGP_CASTEiJ_G0029284.1 mouse_genomes_project 5 138233224 138234652 + Nsun5 protein_coding processed_transcript MGP_CASTEiJ_T0075130.1 MGP_CASTEiJ_G0029284.1 mouse_genomes_project 5 138233229 138237239 + MGP_CASTEiJ_P0075130 Nsun5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075131.1 MGP_CASTEiJ_G0029284.1 mouse_genomes_project 5 138233245 138237100 + MGP_CASTEiJ_P0075131 Nsun5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075132.1 MGP_CASTEiJ_G0029284.1 mouse_genomes_project 5 138233826 138235796 + Nsun5 protein_coding retained_intron MGP_CASTEiJ_T0075133.1 MGP_CASTEiJ_G0029284.1 mouse_genomes_project 5 138234176 138237119 + Nsun5 protein_coding retained_intron MGP_CASTEiJ_T0075134.1 MGP_CASTEiJ_G0029284.1 mouse_genomes_project 5 138234308 138235057 + Nsun5 protein_coding retained_intron MGP_CASTEiJ_T0075135.1 MGP_CASTEiJ_G0029284.1 mouse_genomes_project 5 138236676 138240746 + Nsun5 protein_coding retained_intron MGP_CASTEiJ_T0075136.1 MGP_CASTEiJ_G0029284.1 mouse_genomes_project 5 138237213 138239168 + Nsun5 protein_coding retained_intron MGP_CASTEiJ_T0004761.1 MGP_CASTEiJ_G0004101.1 mouse_genomes_project 5 154535575 154553305 - Gm42557 antisense antisense MGP_CASTEiJ_T0070817.1 MGP_CASTEiJ_G0028492.1 mouse_genomes_project 5 27368447 27381642 + MGP_CASTEiJ_P0070817 Gareml protein_coding protein_coding MGP_CASTEiJ_T0070818.1 MGP_CASTEiJ_G0028492.1 mouse_genomes_project 5 27368549 27381636 + MGP_CASTEiJ_P0070818 Gareml protein_coding unknown_likely_coding MGP_CASTEiJ_T0098976.1 MGP_CASTEiJ_G0035899.1 mouse_genomes_project 5 133734499 133739153 - Gm43166 sense_intronic sense_intronic MGP_CASTEiJ_T0072749.1 MGP_CASTEiJ_G0028834.1 mouse_genomes_project 5 90709385 90747302 - MGP_CASTEiJ_P0072749 Rassf6 protein_coding protein_coding MGP_CASTEiJ_T0072750.1 MGP_CASTEiJ_G0028834.1 mouse_genomes_project 5 90709385 90747302 - MGP_CASTEiJ_P0072750 Rassf6 protein_coding protein_coding MGP_CASTEiJ_T0072751.1 MGP_CASTEiJ_G0028834.1 mouse_genomes_project 5 90709935 90716205 - MGP_CASTEiJ_P0072751 Rassf6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072752.1 MGP_CASTEiJ_G0028834.1 mouse_genomes_project 5 90710142 90747472 - MGP_CASTEiJ_P0072752 Rassf6 protein_coding protein_coding MGP_CASTEiJ_T0072753.1 MGP_CASTEiJ_G0028834.1 mouse_genomes_project 5 90724812 90747443 - MGP_CASTEiJ_P0072753 Rassf6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072754.1 MGP_CASTEiJ_G0028834.1 mouse_genomes_project 5 90729359 90747342 - MGP_CASTEiJ_P0072754 Rassf6 protein_coding protein_coding MGP_CASTEiJ_T0072755.1 MGP_CASTEiJ_G0028834.1 mouse_genomes_project 5 90745283 90747470 - Rassf6 protein_coding processed_transcript MGP_CASTEiJ_T0099931.1 MGP_CASTEiJ_G0036844.1 mouse_genomes_project 5 145106175 145106282 - Gm24131 snRNA snRNA MGP_CASTEiJ_T0075698.1 MGP_CASTEiJ_G0029392.1 mouse_genomes_project 5 143174796 143186933 + MGP_CASTEiJ_P0075698 Mafk protein_coding protein_coding MGP_CASTEiJ_T0075699.1 MGP_CASTEiJ_G0029392.1 mouse_genomes_project 5 143174817 143183882 + Mafk protein_coding processed_transcript MGP_CASTEiJ_T0075700.1 MGP_CASTEiJ_G0029392.1 mouse_genomes_project 5 143180807 143186611 + MGP_CASTEiJ_P0075700 Mafk protein_coding protein_coding MGP_CASTEiJ_T0072426.1 MGP_CASTEiJ_G0028751.1 mouse_genomes_project 5 75523368 75547961 - MGP_CASTEiJ_P0072426 Pdcl2 protein_coding protein_coding MGP_CASTEiJ_T0072427.1 MGP_CASTEiJ_G0028751.1 mouse_genomes_project 5 75523380 75547984 - MGP_CASTEiJ_P0072427 Pdcl2 protein_coding protein_coding MGP_CASTEiJ_T0072868.1 MGP_CASTEiJ_G0028861.1 mouse_genomes_project 5 92638046 92700668 - MGP_CASTEiJ_P0072868 Scarb2 protein_coding protein_coding MGP_CASTEiJ_T0072869.1 MGP_CASTEiJ_G0028861.1 mouse_genomes_project 5 92699813 92701871 - Scarb2 protein_coding retained_intron MGP_CASTEiJ_T0010372.1 MGP_CASTEiJ_G0008560.1 mouse_genomes_project 5 28955572 28955682 - Mir3473e miRNA miRNA MGP_CASTEiJ_T0007912.1 MGP_CASTEiJ_G0006463.1 mouse_genomes_project 5 37707642 37717304 - Gm35191 lincRNA lincRNA MGP_CASTEiJ_T0008066.1 MGP_CASTEiJ_G0006585.1 mouse_genomes_project 5 111212581 111214824 + Gm26711 lincRNA lincRNA MGP_CASTEiJ_T0098388.1 MGP_CASTEiJ_G0035319.1 mouse_genomes_project 5 123825842 123826258 - pseudogene pseudogene MGP_CASTEiJ_T0014549.1 MGP_CASTEiJ_G0012712.1 mouse_genomes_project 5 88146865 88147220 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075332.1 MGP_CASTEiJ_G0029322.1 mouse_genomes_project 5 140155019 140170404 - MGP_CASTEiJ_P0075332 Muc3 protein_coding protein_coding MGP_CASTEiJ_T0075333.1 MGP_CASTEiJ_G0029322.1 mouse_genomes_project 5 140155059 140159889 - Muc3 protein_coding processed_transcript MGP_CASTEiJ_T0075744.1 MGP_CASTEiJ_G0029406.1 mouse_genomes_project 5 144134814 144175733 - MGP_CASTEiJ_P0075744 Iqce protein_coding protein_coding MGP_CASTEiJ_T0075745.1 MGP_CASTEiJ_G0029406.1 mouse_genomes_project 5 144136492 144139225 - Iqce protein_coding retained_intron MGP_CASTEiJ_T0075746.1 MGP_CASTEiJ_G0029406.1 mouse_genomes_project 5 144136492 144175620 - Iqce protein_coding retained_intron MGP_CASTEiJ_T0075747.1 MGP_CASTEiJ_G0029406.1 mouse_genomes_project 5 144138263 144175694 - MGP_CASTEiJ_P0075747 Iqce protein_coding protein_coding MGP_CASTEiJ_T0075748.1 MGP_CASTEiJ_G0029406.1 mouse_genomes_project 5 144139012 144156315 - MGP_CASTEiJ_P0075748 Iqce protein_coding protein_coding MGP_CASTEiJ_T0075749.1 MGP_CASTEiJ_G0029406.1 mouse_genomes_project 5 144139141 144142341 - Iqce protein_coding retained_intron MGP_CASTEiJ_T0075750.1 MGP_CASTEiJ_G0029406.1 mouse_genomes_project 5 144155853 144163426 - Iqce protein_coding retained_intron MGP_CASTEiJ_T0075751.1 MGP_CASTEiJ_G0029406.1 mouse_genomes_project 5 144156619 144175631 - Iqce protein_coding retained_intron MGP_CASTEiJ_T0075752.1 MGP_CASTEiJ_G0029406.1 mouse_genomes_project 5 144163422 144175324 - Iqce protein_coding processed_transcript MGP_CASTEiJ_T0075753.1 MGP_CASTEiJ_G0029406.1 mouse_genomes_project 5 144163427 144175733 - MGP_CASTEiJ_P0075753 Iqce protein_coding protein_coding MGP_CASTEiJ_T0075754.1 MGP_CASTEiJ_G0029406.1 mouse_genomes_project 5 144166248 144175655 - MGP_CASTEiJ_P0075754 Iqce protein_coding protein_coding MGP_CASTEiJ_T0075755.1 MGP_CASTEiJ_G0029406.1 mouse_genomes_project 5 144166646 144175649 - Iqce protein_coding retained_intron MGP_CASTEiJ_T0076006.1 MGP_CASTEiJ_G0029460.1 mouse_genomes_project 5 148972175 148979854 + MGP_CASTEiJ_P0076006 Bud31 protein_coding protein_coding MGP_CASTEiJ_T0076007.1 MGP_CASTEiJ_G0029460.1 mouse_genomes_project 5 148972209 148973439 + Bud31 protein_coding retained_intron MGP_CASTEiJ_T0076008.1 MGP_CASTEiJ_G0029460.1 mouse_genomes_project 5 148972210 148979850 + MGP_CASTEiJ_P0076008 Bud31 protein_coding protein_coding MGP_CASTEiJ_T0076009.1 MGP_CASTEiJ_G0029460.1 mouse_genomes_project 5 148972221 148979850 + MGP_CASTEiJ_P0076009 Bud31 protein_coding protein_coding MGP_CASTEiJ_T0076010.1 MGP_CASTEiJ_G0029460.1 mouse_genomes_project 5 148972228 148979847 + MGP_CASTEiJ_P0076010 Bud31 protein_coding protein_coding MGP_CASTEiJ_T0076011.1 MGP_CASTEiJ_G0029460.1 mouse_genomes_project 5 148973934 148976722 + Bud31 protein_coding retained_intron MGP_CASTEiJ_T0076012.1 MGP_CASTEiJ_G0029460.1 mouse_genomes_project 5 148976578 148979759 + Bud31 protein_coding retained_intron MGP_CASTEiJ_T0075346.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140306115 140318075 - MGP_CASTEiJ_P0075346 Srrt protein_coding protein_coding MGP_CASTEiJ_T0075347.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140306122 140318067 - MGP_CASTEiJ_P0075347 Srrt protein_coding protein_coding MGP_CASTEiJ_T0075348.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140306126 140318067 - MGP_CASTEiJ_P0075348 Srrt protein_coding protein_coding MGP_CASTEiJ_T0075349.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140306128 140317830 - MGP_CASTEiJ_P0075349 Srrt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075350.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140306136 140310058 - MGP_CASTEiJ_P0075350 Srrt protein_coding protein_coding MGP_CASTEiJ_T0075351.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140306398 140307837 - MGP_CASTEiJ_P0075351 Srrt protein_coding protein_coding MGP_CASTEiJ_T0075352.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140306429 140307346 - Srrt protein_coding retained_intron MGP_CASTEiJ_T0075353.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140306647 140307629 - Srrt protein_coding retained_intron MGP_CASTEiJ_T0075354.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140306690 140307265 - Srrt protein_coding retained_intron MGP_CASTEiJ_T0075355.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140306878 140307979 - Srrt protein_coding retained_intron MGP_CASTEiJ_T0075356.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140308035 140308959 - Srrt protein_coding retained_intron MGP_CASTEiJ_T0075357.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140308243 140310731 - MGP_CASTEiJ_P0075357 Srrt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075358.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140308243 140310422 - MGP_CASTEiJ_P0075358 Srrt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075359.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140308670 140310299 - Srrt protein_coding retained_intron MGP_CASTEiJ_T0075360.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140309998 140317882 - Srrt protein_coding retained_intron MGP_CASTEiJ_T0075361.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140310285 140311144 - Srrt protein_coding retained_intron MGP_CASTEiJ_T0075362.1 MGP_CASTEiJ_G0029326.1 mouse_genomes_project 5 140313066 140318041 - MGP_CASTEiJ_P0075362 Srrt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0014640.1 MGP_CASTEiJ_G0012803.1 mouse_genomes_project 5 136247899 136248878 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070417.1 MGP_CASTEiJ_G0028413.1 mouse_genomes_project 5 14461326 14619435 + MGP_CASTEiJ_P0070417 Sema3c protein_coding protein_coding MGP_CASTEiJ_T0070418.1 MGP_CASTEiJ_G0028413.1 mouse_genomes_project 5 14461694 14570823 + MGP_CASTEiJ_P0070418 Sema3c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070419.1 MGP_CASTEiJ_G0028413.1 mouse_genomes_project 5 14461811 14465212 + Sema3c protein_coding retained_intron MGP_CASTEiJ_T0070420.1 MGP_CASTEiJ_G0028413.1 mouse_genomes_project 5 14461944 14564002 + MGP_CASTEiJ_P0070420 Sema3c protein_coding protein_coding MGP_CASTEiJ_T0070421.1 MGP_CASTEiJ_G0028413.1 mouse_genomes_project 5 14559465 14615672 + MGP_CASTEiJ_P0070421 Sema3c protein_coding unknown_likely_coding MGP_CASTEiJ_T0070422.1 MGP_CASTEiJ_G0028413.1 mouse_genomes_project 5 14581038 14619432 + Sema3c protein_coding retained_intron MGP_CASTEiJ_T0073923.1 MGP_CASTEiJ_G0029079.1 mouse_genomes_project 5 116921165 116938714 + MGP_CASTEiJ_P0073923 Rab35 protein_coding protein_coding MGP_CASTEiJ_T0073924.1 MGP_CASTEiJ_G0029079.1 mouse_genomes_project 5 116921192 116937095 + MGP_CASTEiJ_P0073924 Rab35 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0004594.1 MGP_CASTEiJ_G0003983.1 mouse_genomes_project 5 81373282 81380332 - Gm16054 antisense antisense MGP_CASTEiJ_T0071542.1 MGP_CASTEiJ_G0028601.1 mouse_genomes_project 5 34342440 34343697 - MGP_CASTEiJ_P0071542 Bloc1s4 protein_coding protein_coding MGP_CASTEiJ_T0070888.1 MGP_CASTEiJ_G0028505.1 mouse_genomes_project 5 28071614 28124892 + MGP_CASTEiJ_P0070888 Mapre3 protein_coding protein_coding MGP_CASTEiJ_T0070889.1 MGP_CASTEiJ_G0028505.1 mouse_genomes_project 5 28071706 28124845 + Mapre3 protein_coding retained_intron MGP_CASTEiJ_T0070890.1 MGP_CASTEiJ_G0028505.1 mouse_genomes_project 5 28071727 28124845 + MGP_CASTEiJ_P0070890 Mapre3 protein_coding protein_coding MGP_CASTEiJ_T0070891.1 MGP_CASTEiJ_G0028505.1 mouse_genomes_project 5 28071733 28121364 + Mapre3 protein_coding retained_intron MGP_CASTEiJ_T0070892.1 MGP_CASTEiJ_G0028505.1 mouse_genomes_project 5 28112586 28122145 + MGP_CASTEiJ_P0070892 Mapre3 protein_coding protein_coding MGP_CASTEiJ_T0070893.1 MGP_CASTEiJ_G0028505.1 mouse_genomes_project 5 28123306 28124040 + Mapre3 protein_coding retained_intron MGP_CASTEiJ_T0073400.1 MGP_CASTEiJ_G0028979.1 mouse_genomes_project 5 110028828 110062778 + MGP_CASTEiJ_P0073400 Vmn2r16 protein_coding protein_coding MGP_CASTEiJ_T0072672.1 MGP_CASTEiJ_G0028810.1 mouse_genomes_project 5 88111228 88112196 - MGP_CASTEiJ_P0072672 protein_coding protein_coding MGP_CASTEiJ_T0102352.1 MGP_CASTEiJ_G0039077.1 mouse_genomes_project 5 87176111 87193674 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0070758.1 MGP_CASTEiJ_G0028480.1 mouse_genomes_project 5 25524952 25561467 + MGP_CASTEiJ_P0070758 Rbm33 protein_coding non_stop_decay MGP_CASTEiJ_T0070759.1 MGP_CASTEiJ_G0028480.1 mouse_genomes_project 5 25525008 25627352 + MGP_CASTEiJ_P0070759 Rbm33 protein_coding protein_coding MGP_CASTEiJ_T0070760.1 MGP_CASTEiJ_G0028480.1 mouse_genomes_project 5 25525008 25630486 + MGP_CASTEiJ_P0070760 Rbm33 protein_coding protein_coding MGP_CASTEiJ_T0070761.1 MGP_CASTEiJ_G0028480.1 mouse_genomes_project 5 25525033 25564343 + MGP_CASTEiJ_P0070761 Rbm33 protein_coding protein_coding MGP_CASTEiJ_T0070762.1 MGP_CASTEiJ_G0028480.1 mouse_genomes_project 5 25525099 25632258 + MGP_CASTEiJ_P0070762 Rbm33 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070763.1 MGP_CASTEiJ_G0028480.1 mouse_genomes_project 5 25604171 25624928 + MGP_CASTEiJ_P0070763 Rbm33 protein_coding protein_coding MGP_CASTEiJ_T0070764.1 MGP_CASTEiJ_G0028480.1 mouse_genomes_project 5 25621915 25625280 + MGP_CASTEiJ_P0070764 Rbm33 protein_coding protein_coding MGP_CASTEiJ_T0075576.1 MGP_CASTEiJ_G0029370.1 mouse_genomes_project 5 141547444 141645344 - MGP_CASTEiJ_P0075576 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0004518.1 MGP_CASTEiJ_G0003922.1 mouse_genomes_project 5 22073682 22077871 + Prkag2os1 antisense antisense MGP_CASTEiJ_T0099922.1 MGP_CASTEiJ_G0036835.1 mouse_genomes_project 5 126833210 126833308 - Gm24854 snRNA snRNA MGP_CASTEiJ_T0001728.1 MGP_CASTEiJ_G0001651.1 mouse_genomes_project 5 120198608 120203564 + TEC TEC MGP_CASTEiJ_T0072913.1 MGP_CASTEiJ_G0028871.1 mouse_genomes_project 5 95660555 95664675 + MGP_CASTEiJ_P0072913 Cxcl13 protein_coding protein_coding MGP_CASTEiJ_T0014681.1 MGP_CASTEiJ_G0012844.1 mouse_genomes_project 5 150089341 150090102 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014574.1 MGP_CASTEiJ_G0012737.1 mouse_genomes_project 5 100530137 100530490 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099935.1 MGP_CASTEiJ_G0036848.1 mouse_genomes_project 5 155236980 155237086 + Gm24630 snRNA snRNA MGP_CASTEiJ_T0007928.1 MGP_CASTEiJ_G0006478.1 mouse_genomes_project 5 50364948 50365225 - Gm43179 lincRNA lincRNA MGP_CASTEiJ_T0098960.1 MGP_CASTEiJ_G0035884.1 mouse_genomes_project 5 31684457 31688392 - sense_intronic sense_intronic MGP_CASTEiJ_T0014429.1 MGP_CASTEiJ_G0012592.1 mouse_genomes_project 5 30197635 30234920 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070329.1 MGP_CASTEiJ_G0028399.1 mouse_genomes_project 5 5627956 5719134 + MGP_CASTEiJ_P0070329 Abcb1a protein_coding protein_coding MGP_CASTEiJ_T0070331.1 MGP_CASTEiJ_G0028399.1 mouse_genomes_project 5 5691387 5722762 + Abcb1a protein_coding retained_intron MGP_CASTEiJ_T0070332.1 MGP_CASTEiJ_G0028399.1 mouse_genomes_project 5 5691417 5695002 + Abcb1a protein_coding processed_transcript MGP_CASTEiJ_T0070333.1 MGP_CASTEiJ_G0028399.1 mouse_genomes_project 5 5705750 5710529 + Abcb1a protein_coding retained_intron MGP_CASTEiJ_T0072144.1 MGP_CASTEiJ_G0028700.1 mouse_genomes_project 5 65911463 65916360 - MGP_CASTEiJ_P0072144 Phox2b protein_coding protein_coding MGP_CASTEiJ_T0072145.1 MGP_CASTEiJ_G0028700.1 mouse_genomes_project 5 65914099 65916116 - MGP_CASTEiJ_P0072145 Phox2b protein_coding protein_coding MGP_CASTEiJ_T0098763.1 MGP_CASTEiJ_G0035694.1 mouse_genomes_project 5 1951426 1951554 - Gm22897 scaRNA scaRNA MGP_CASTEiJ_T0007926.1 MGP_CASTEiJ_G0006476.1 mouse_genomes_project 5 50123275 50124488 + Gm43177 lincRNA lincRNA MGP_CASTEiJ_T0074191.1 MGP_CASTEiJ_G0029133.1 mouse_genomes_project 5 123416060 123447108 - MGP_CASTEiJ_P0074191 Gm42878 protein_coding protein_coding MGP_CASTEiJ_T0074192.1 MGP_CASTEiJ_G0029133.1 mouse_genomes_project 5 123416060 123447108 - MGP_CASTEiJ_P0074192 Gm42878 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001563.1 MGP_CASTEiJ_G0001488.1 mouse_genomes_project 5 61134399 61137718 - TEC TEC MGP_CASTEiJ_T0001788.1 MGP_CASTEiJ_G0001710.1 mouse_genomes_project 5 134265466 134266165 - TEC TEC MGP_CASTEiJ_T0007940.1 MGP_CASTEiJ_G0006489.1 mouse_genomes_project 5 62929576 62932699 + Gm43838 lincRNA lincRNA MGP_CASTEiJ_T0001809.1 MGP_CASTEiJ_G0001731.1 mouse_genomes_project 5 136850928 136851910 - TEC TEC MGP_CASTEiJ_T0099913.1 MGP_CASTEiJ_G0036826.1 mouse_genomes_project 5 115016423 115016503 - Gm22056 snRNA snRNA MGP_CASTEiJ_T0072289.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 71978634 72135352 - MGP_CASTEiJ_P0072289 Fryl protein_coding unknown_likely_coding MGP_CASTEiJ_T0072290.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72002987 72049819 - MGP_CASTEiJ_P0072290 Fryl protein_coding protein_coding MGP_CASTEiJ_T0072291.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72003324 72250123 - MGP_CASTEiJ_P0072291 Fryl protein_coding protein_coding MGP_CASTEiJ_T0072292.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72004340 72131203 - MGP_CASTEiJ_P0072292 Fryl protein_coding protein_coding MGP_CASTEiJ_T0072293.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72019121 72067922 - MGP_CASTEiJ_P0072293 Fryl protein_coding protein_coding MGP_CASTEiJ_T0072294.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72025067 72028062 - Fryl protein_coding retained_intron MGP_CASTEiJ_T0072295.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72025170 72062819 - Fryl protein_coding processed_transcript MGP_CASTEiJ_T0072296.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72031439 72032364 - Fryl protein_coding retained_intron MGP_CASTEiJ_T0072297.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72043042 72043932 - Fryl protein_coding retained_intron MGP_CASTEiJ_T0072298.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72044122 72049943 - MGP_CASTEiJ_P0072298 Fryl protein_coding protein_coding MGP_CASTEiJ_T0072299.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72053587 72056707 - Fryl protein_coding retained_intron MGP_CASTEiJ_T0072300.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72076901 72077905 - MGP_CASTEiJ_P0072300 Fryl protein_coding protein_coding MGP_CASTEiJ_T0072301.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72079019 72153861 - Fryl protein_coding retained_intron MGP_CASTEiJ_T0072302.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72089414 72101845 - MGP_CASTEiJ_P0072302 Fryl protein_coding protein_coding MGP_CASTEiJ_T0072303.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72100328 72104238 - MGP_CASTEiJ_P0072303 Fryl protein_coding protein_coding MGP_CASTEiJ_T0072304.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72101257 72249929 - Fryl protein_coding retained_intron MGP_CASTEiJ_T0072305.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72131104 72179093 - MGP_CASTEiJ_P0072305 Fryl protein_coding protein_coding MGP_CASTEiJ_T0072306.1 MGP_CASTEiJ_G0028730.1 mouse_genomes_project 5 72181039 72250093 - Fryl protein_coding retained_intron MGP_CASTEiJ_T0014479.1 MGP_CASTEiJ_G0012642.1 mouse_genomes_project 5 55731250 55731880 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074128.1 MGP_CASTEiJ_G0029119.1 mouse_genomes_project 5 122595757 122604002 - MGP_CASTEiJ_P0074128 Oas1c protein_coding protein_coding MGP_CASTEiJ_T0074129.1 MGP_CASTEiJ_G0029119.1 mouse_genomes_project 5 122595762 122601204 - MGP_CASTEiJ_P0074129 Oas1c protein_coding protein_coding MGP_CASTEiJ_T0074130.1 MGP_CASTEiJ_G0029119.1 mouse_genomes_project 5 122595762 122601021 - MGP_CASTEiJ_P0074130 Oas1c protein_coding unknown_likely_coding MGP_CASTEiJ_T0001696.1 MGP_CASTEiJ_G0001619.1 mouse_genomes_project 5 112068176 112068716 + TEC TEC MGP_CASTEiJ_T0075779.1 MGP_CASTEiJ_G0029413.1 mouse_genomes_project 5 146060978 146068826 + Ap5z1 protein_coding processed_transcript MGP_CASTEiJ_T0075780.1 MGP_CASTEiJ_G0029413.1 mouse_genomes_project 5 146061023 146065975 + MGP_CASTEiJ_P0075780 Ap5z1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075781.1 MGP_CASTEiJ_G0029413.1 mouse_genomes_project 5 146061033 146076137 + MGP_CASTEiJ_P0075781 Ap5z1 protein_coding protein_coding MGP_CASTEiJ_T0075782.1 MGP_CASTEiJ_G0029413.1 mouse_genomes_project 5 146061040 146075224 + Ap5z1 protein_coding retained_intron MGP_CASTEiJ_T0075783.1 MGP_CASTEiJ_G0029413.1 mouse_genomes_project 5 146061053 146075479 + MGP_CASTEiJ_P0075783 Ap5z1 protein_coding protein_coding MGP_CASTEiJ_T0075784.1 MGP_CASTEiJ_G0029413.1 mouse_genomes_project 5 146070762 146072450 + Ap5z1 protein_coding retained_intron MGP_CASTEiJ_T0001665.1 MGP_CASTEiJ_G0001588.1 mouse_genomes_project 5 97823789 97826218 + TEC TEC MGP_CASTEiJ_T0001439.1 MGP_CASTEiJ_G0001366.1 mouse_genomes_project 5 29254711 29255406 + TEC TEC MGP_CASTEiJ_T0004728.1 MGP_CASTEiJ_G0004078.1 mouse_genomes_project 5 139217760 139360788 + Gm16599 antisense antisense MGP_CASTEiJ_T0072596.1 MGP_CASTEiJ_G0028783.1 mouse_genomes_project 5 86757321 86783145 - MGP_CASTEiJ_P0072596 Ugt2b34 protein_coding protein_coding MGP_CASTEiJ_T0004729.1 MGP_CASTEiJ_G0004079.1 mouse_genomes_project 5 140569013 140580335 + Gm17112 antisense antisense MGP_CASTEiJ_T0071997.1 MGP_CASTEiJ_G0028682.1 mouse_genomes_project 5 63901627 63983477 - MGP_CASTEiJ_P0071997 Rfc1 protein_coding protein_coding MGP_CASTEiJ_T0071998.1 MGP_CASTEiJ_G0028682.1 mouse_genomes_project 5 63901629 63983583 - MGP_CASTEiJ_P0071998 Rfc1 protein_coding protein_coding MGP_CASTEiJ_T0071999.1 MGP_CASTEiJ_G0028682.1 mouse_genomes_project 5 63901629 63983534 - MGP_CASTEiJ_P0071999 Rfc1 protein_coding protein_coding MGP_CASTEiJ_T0072000.1 MGP_CASTEiJ_G0028682.1 mouse_genomes_project 5 63902379 63983531 - MGP_CASTEiJ_P0072000 Rfc1 protein_coding protein_coding MGP_CASTEiJ_T0072001.1 MGP_CASTEiJ_G0028682.1 mouse_genomes_project 5 63902852 63910500 - MGP_CASTEiJ_P0072001 Rfc1 protein_coding protein_coding MGP_CASTEiJ_T0072002.1 MGP_CASTEiJ_G0028682.1 mouse_genomes_project 5 63904022 63916524 - Rfc1 protein_coding retained_intron MGP_CASTEiJ_T0072003.1 MGP_CASTEiJ_G0028682.1 mouse_genomes_project 5 63954582 63983526 - Rfc1 protein_coding retained_intron MGP_CASTEiJ_T0071067.1 MGP_CASTEiJ_G0028530.1 mouse_genomes_project 5 28538255 28576804 - MGP_CASTEiJ_P0071067 Ift172 protein_coding protein_coding MGP_CASTEiJ_T0071068.1 MGP_CASTEiJ_G0028530.1 mouse_genomes_project 5 28538258 28539620 - Ift172 protein_coding retained_intron MGP_CASTEiJ_T0071069.1 MGP_CASTEiJ_G0028530.1 mouse_genomes_project 5 28538519 28539777 - Ift172 protein_coding retained_intron MGP_CASTEiJ_T0071070.1 MGP_CASTEiJ_G0028530.1 mouse_genomes_project 5 28546414 28547180 - Ift172 protein_coding retained_intron MGP_CASTEiJ_T0071071.1 MGP_CASTEiJ_G0028530.1 mouse_genomes_project 5 28547288 28549861 - Ift172 protein_coding retained_intron MGP_CASTEiJ_T0071072.1 MGP_CASTEiJ_G0028530.1 mouse_genomes_project 5 28548769 28549569 - Ift172 protein_coding retained_intron MGP_CASTEiJ_T0071073.1 MGP_CASTEiJ_G0028530.1 mouse_genomes_project 5 28552273 28565987 - MGP_CASTEiJ_P0071073 Ift172 protein_coding protein_coding MGP_CASTEiJ_T0071074.1 MGP_CASTEiJ_G0028530.1 mouse_genomes_project 5 28557172 28567008 - MGP_CASTEiJ_P0071074 Ift172 protein_coding protein_coding MGP_CASTEiJ_T0071075.1 MGP_CASTEiJ_G0028530.1 mouse_genomes_project 5 28561056 28576736 - Ift172 protein_coding retained_intron MGP_CASTEiJ_T0071076.1 MGP_CASTEiJ_G0028530.1 mouse_genomes_project 5 28571026 28572139 - Ift172 protein_coding retained_intron MGP_CASTEiJ_T0071077.1 MGP_CASTEiJ_G0028530.1 mouse_genomes_project 5 28571666 28576813 - MGP_CASTEiJ_P0071077 Ift172 protein_coding protein_coding MGP_CASTEiJ_T0004512.1 MGP_CASTEiJ_G0003917.1 mouse_genomes_project 5 20310174 20336304 - Gm42948 antisense antisense MGP_CASTEiJ_T0070310.1 MGP_CASTEiJ_G0028396.1 mouse_genomes_project 5 5383515 5409149 - MGP_CASTEiJ_P0070310 Dbf4 protein_coding protein_coding MGP_CASTEiJ_T0070311.1 MGP_CASTEiJ_G0028396.1 mouse_genomes_project 5 5383553 5409185 - MGP_CASTEiJ_P0070311 Dbf4 protein_coding protein_coding MGP_CASTEiJ_T0070312.1 MGP_CASTEiJ_G0028396.1 mouse_genomes_project 5 5383696 5409051 - MGP_CASTEiJ_P0070312 Dbf4 protein_coding protein_coding MGP_CASTEiJ_T0070313.1 MGP_CASTEiJ_G0028396.1 mouse_genomes_project 5 5384394 5386842 - Dbf4 protein_coding retained_intron MGP_CASTEiJ_T0070315.1 MGP_CASTEiJ_G0028396.1 mouse_genomes_project 5 5388157 5409150 - Dbf4 protein_coding retained_intron MGP_CASTEiJ_T0070316.1 MGP_CASTEiJ_G0028396.1 mouse_genomes_project 5 5389639 5391733 - Dbf4 protein_coding retained_intron MGP_CASTEiJ_T0070317.1 MGP_CASTEiJ_G0028396.1 mouse_genomes_project 5 5404902 5409163 - Dbf4 protein_coding processed_transcript MGP_CASTEiJ_T0070318.1 MGP_CASTEiJ_G0028396.1 mouse_genomes_project 5 5408652 5409138 - Dbf4 protein_coding retained_intron MGP_CASTEiJ_T0072236.1 MGP_CASTEiJ_G0028719.1 mouse_genomes_project 5 71219718 71438824 - MGP_CASTEiJ_P0072236 Corin protein_coding protein_coding MGP_CASTEiJ_T0072237.1 MGP_CASTEiJ_G0028719.1 mouse_genomes_project 5 71219719 71438559 - MGP_CASTEiJ_P0072237 Corin protein_coding protein_coding MGP_CASTEiJ_T0072238.1 MGP_CASTEiJ_G0028719.1 mouse_genomes_project 5 71221179 71438784 - MGP_CASTEiJ_P0072238 Corin protein_coding protein_coding MGP_CASTEiJ_T0072239.1 MGP_CASTEiJ_G0028719.1 mouse_genomes_project 5 71221179 71438790 - MGP_CASTEiJ_P0072239 Corin protein_coding protein_coding MGP_CASTEiJ_T0072240.1 MGP_CASTEiJ_G0028719.1 mouse_genomes_project 5 71221191 71438790 - MGP_CASTEiJ_P0072240 Corin protein_coding protein_coding MGP_CASTEiJ_T0072241.1 MGP_CASTEiJ_G0028719.1 mouse_genomes_project 5 71272219 71279358 - Corin protein_coding retained_intron MGP_CASTEiJ_T0072242.1 MGP_CASTEiJ_G0028719.1 mouse_genomes_project 5 71277029 71298090 - Corin protein_coding processed_transcript MGP_CASTEiJ_T0073797.1 MGP_CASTEiJ_G0029052.1 mouse_genomes_project 5 115991371 115992841 - MGP_CASTEiJ_P0073797 2610524H06Rik protein_coding protein_coding MGP_CASTEiJ_T0072791.1 MGP_CASTEiJ_G0028849.1 mouse_genomes_project 5 92146982 92150841 + Gm1045 protein_coding retained_intron MGP_CASTEiJ_T0072792.1 MGP_CASTEiJ_G0028849.1 mouse_genomes_project 5 92146982 92155843 + MGP_CASTEiJ_P0072792 Gm1045 protein_coding protein_coding MGP_CASTEiJ_T0074444.1 MGP_CASTEiJ_G0029168.1 mouse_genomes_project 5 125251390 125325464 + Psmd9 protein_coding processed_transcript MGP_CASTEiJ_T0074451.1 MGP_CASTEiJ_G0029168.1 mouse_genomes_project 5 125311672 125331700 + Psmd9 protein_coding processed_transcript MGP_CASTEiJ_T0074452.1 MGP_CASTEiJ_G0029168.1 mouse_genomes_project 5 125311672 125337630 + MGP_CASTEiJ_P0074452 Psmd9 protein_coding protein_coding MGP_CASTEiJ_T0074453.1 MGP_CASTEiJ_G0029168.1 mouse_genomes_project 5 125311740 125312519 + Psmd9 protein_coding retained_intron MGP_CASTEiJ_T0074454.1 MGP_CASTEiJ_G0029168.1 mouse_genomes_project 5 125312431 125314346 + Psmd9 protein_coding TEC MGP_CASTEiJ_T0074455.1 MGP_CASTEiJ_G0029168.1 mouse_genomes_project 5 125318077 125336052 + MGP_CASTEiJ_P0074455 Psmd9 protein_coding protein_coding MGP_CASTEiJ_T0074456.1 MGP_CASTEiJ_G0029168.1 mouse_genomes_project 5 125327697 125336052 + MGP_CASTEiJ_P0074456 Psmd9 protein_coding protein_coding MGP_CASTEiJ_T0017448.1 MGP_CASTEiJ_G0014931.1 mouse_genomes_project 5 132302488 132318947 + processed_transcript processed_transcript MGP_CASTEiJ_T0017449.1 MGP_CASTEiJ_G0014931.1 mouse_genomes_project 5 132302929 132318393 + processed_transcript processed_transcript MGP_CASTEiJ_T0017450.1 MGP_CASTEiJ_G0014931.1 mouse_genomes_project 5 132306006 132308161 + processed_transcript retained_intron MGP_CASTEiJ_T0017451.1 MGP_CASTEiJ_G0014931.1 mouse_genomes_project 5 132309272 132310594 + processed_transcript retained_intron MGP_CASTEiJ_T0017452.1 MGP_CASTEiJ_G0014931.1 mouse_genomes_project 5 132310668 132318438 + processed_transcript processed_transcript MGP_CASTEiJ_T0017453.1 MGP_CASTEiJ_G0014931.1 mouse_genomes_project 5 132317539 132318555 + processed_transcript processed_transcript MGP_CASTEiJ_T0098619.1 MGP_CASTEiJ_G0035550.1 mouse_genomes_project 5 120913139 120913256 + n-R5s175 rRNA rRNA MGP_CASTEiJ_T0001401.1 MGP_CASTEiJ_G0001330.1 mouse_genomes_project 5 11228856 11230720 + TEC TEC MGP_CASTEiJ_T0001731.1 MGP_CASTEiJ_G0001654.1 mouse_genomes_project 5 120580616 120583050 - TEC TEC MGP_CASTEiJ_T0074691.1 MGP_CASTEiJ_G0029207.1 mouse_genomes_project 5 126964569 126996630 - MGP_CASTEiJ_P0074691 Ccdc92 protein_coding protein_coding MGP_CASTEiJ_T0074692.1 MGP_CASTEiJ_G0029207.1 mouse_genomes_project 5 126966050 126996091 - MGP_CASTEiJ_P0074692 Ccdc92 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074693.1 MGP_CASTEiJ_G0029207.1 mouse_genomes_project 5 126966226 126984754 - MGP_CASTEiJ_P0074693 Ccdc92 protein_coding protein_coding MGP_CASTEiJ_T0017379.1 MGP_CASTEiJ_G0014908.1 mouse_genomes_project 5 27829757 27846230 - Gm9899 processed_transcript lincRNA MGP_CASTEiJ_T0017380.1 MGP_CASTEiJ_G0014908.1 mouse_genomes_project 5 27833249 27833808 - Gm9899 processed_transcript pseudogene MGP_CASTEiJ_T0017381.1 MGP_CASTEiJ_G0014908.1 mouse_genomes_project 5 27833731 27835638 - Gm9899 processed_transcript retained_intron MGP_CASTEiJ_T0007899.1 MGP_CASTEiJ_G0006456.1 mouse_genomes_project 5 35563166 35567303 + Gm20052 lincRNA lincRNA MGP_CASTEiJ_T0007900.1 MGP_CASTEiJ_G0006456.1 mouse_genomes_project 5 35563333 35564369 + Gm20052 lincRNA lincRNA MGP_CASTEiJ_T0007901.1 MGP_CASTEiJ_G0006456.1 mouse_genomes_project 5 35563744 35566185 + Gm20052 lincRNA lincRNA MGP_CASTEiJ_T0007902.1 MGP_CASTEiJ_G0006456.1 mouse_genomes_project 5 35564091 35566662 + Gm20052 lincRNA lincRNA MGP_CASTEiJ_T0007903.1 MGP_CASTEiJ_G0006456.1 mouse_genomes_project 5 35564102 35566523 + Gm20052 lincRNA lincRNA MGP_CASTEiJ_T0074561.1 MGP_CASTEiJ_G0029187.1 mouse_genomes_project 5 126109412 126142385 + MGP_CASTEiJ_P0074561 Hip1r protein_coding protein_coding MGP_CASTEiJ_T0074562.1 MGP_CASTEiJ_G0029187.1 mouse_genomes_project 5 126115776 126125407 + MGP_CASTEiJ_P0074562 Hip1r protein_coding protein_coding MGP_CASTEiJ_T0074563.1 MGP_CASTEiJ_G0029187.1 mouse_genomes_project 5 126131125 126134265 + MGP_CASTEiJ_P0074563 Hip1r protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074564.1 MGP_CASTEiJ_G0029187.1 mouse_genomes_project 5 126136276 126137854 + Hip1r protein_coding retained_intron MGP_CASTEiJ_T0074565.1 MGP_CASTEiJ_G0029187.1 mouse_genomes_project 5 126136629 126138509 + MGP_CASTEiJ_P0074565 Hip1r protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074566.1 MGP_CASTEiJ_G0029187.1 mouse_genomes_project 5 126137226 126138535 + Hip1r protein_coding retained_intron MGP_CASTEiJ_T0074567.1 MGP_CASTEiJ_G0029187.1 mouse_genomes_project 5 126137441 126138521 + Hip1r protein_coding retained_intron MGP_CASTEiJ_T0014524.1 MGP_CASTEiJ_G0012687.1 mouse_genomes_project 5 75633425 75637353 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004730.1 MGP_CASTEiJ_G0004080.1 mouse_genomes_project 5 140659973 140662367 + Gm36266 antisense antisense MGP_CASTEiJ_T0008219.1 MGP_CASTEiJ_G0006681.1 mouse_genomes_project 5 146930475 146939205 + 4930448H16Rik lincRNA lincRNA MGP_CASTEiJ_T0073653.1 MGP_CASTEiJ_G0029027.1 mouse_genomes_project 5 114852726 114858055 + MGP_CASTEiJ_P0073653 Iscu protein_coding protein_coding MGP_CASTEiJ_T0073654.1 MGP_CASTEiJ_G0029027.1 mouse_genomes_project 5 114852781 114857565 + MGP_CASTEiJ_P0073654 Iscu protein_coding protein_coding MGP_CASTEiJ_T0073655.1 MGP_CASTEiJ_G0029027.1 mouse_genomes_project 5 114852781 114858040 + MGP_CASTEiJ_P0073655 Iscu protein_coding protein_coding MGP_CASTEiJ_T0073656.1 MGP_CASTEiJ_G0029027.1 mouse_genomes_project 5 114852796 114856993 + MGP_CASTEiJ_P0073656 Iscu protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073657.1 MGP_CASTEiJ_G0029027.1 mouse_genomes_project 5 114852983 114857781 + MGP_CASTEiJ_P0073657 Iscu protein_coding protein_coding MGP_CASTEiJ_T0073658.1 MGP_CASTEiJ_G0029027.1 mouse_genomes_project 5 114853003 114857712 + MGP_CASTEiJ_P0073658 Iscu protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073659.1 MGP_CASTEiJ_G0029027.1 mouse_genomes_project 5 114853822 114857608 + MGP_CASTEiJ_P0073659 Iscu protein_coding protein_coding MGP_CASTEiJ_T0001537.1 MGP_CASTEiJ_G0001462.1 mouse_genomes_project 5 50180886 50182271 - TEC TEC MGP_CASTEiJ_T0014512.1 MGP_CASTEiJ_G0012675.1 mouse_genomes_project 5 70956723 70957494 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004554.1 MGP_CASTEiJ_G0003950.1 mouse_genomes_project 5 41949631 41953947 + Gm42982 antisense antisense MGP_CASTEiJ_T0008135.1 MGP_CASTEiJ_G0006629.1 mouse_genomes_project 5 121333777 121341398 - Tbx3os2 lincRNA lincRNA MGP_CASTEiJ_T0001723.1 MGP_CASTEiJ_G0001646.1 mouse_genomes_project 5 119355647 119355754 + TEC TEC MGP_CASTEiJ_T0011286.1 MGP_CASTEiJ_G0009474.1 mouse_genomes_project 5 153635380 153635673 - Gm24105 misc_RNA misc_RNA MGP_CASTEiJ_T0073506.1 MGP_CASTEiJ_G0028997.1 mouse_genomes_project 5 111625141 111631469 - MGP_CASTEiJ_P0073506 Pus1 protein_coding protein_coding MGP_CASTEiJ_T0073507.1 MGP_CASTEiJ_G0028997.1 mouse_genomes_project 5 111625141 111632098 - MGP_CASTEiJ_P0073507 Pus1 protein_coding protein_coding MGP_CASTEiJ_T0073508.1 MGP_CASTEiJ_G0028997.1 mouse_genomes_project 5 111625141 111632098 - MGP_CASTEiJ_P0073508 Pus1 protein_coding protein_coding MGP_CASTEiJ_T0073509.1 MGP_CASTEiJ_G0028997.1 mouse_genomes_project 5 111625141 111632161 - MGP_CASTEiJ_P0073509 Pus1 protein_coding protein_coding MGP_CASTEiJ_T0073510.1 MGP_CASTEiJ_G0028997.1 mouse_genomes_project 5 111625142 111632117 - MGP_CASTEiJ_P0073510 Pus1 protein_coding protein_coding MGP_CASTEiJ_T0073511.1 MGP_CASTEiJ_G0028997.1 mouse_genomes_project 5 111627030 111631648 - MGP_CASTEiJ_P0073511 Pus1 protein_coding protein_coding MGP_CASTEiJ_T0073512.1 MGP_CASTEiJ_G0028997.1 mouse_genomes_project 5 111627039 111632093 - MGP_CASTEiJ_P0073512 Pus1 protein_coding protein_coding MGP_CASTEiJ_T0014426.1 MGP_CASTEiJ_G0012589.1 mouse_genomes_project 5 29658988 29659177 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075794.1 MGP_CASTEiJ_G0029416.1 mouse_genomes_project 5 146166976 146220262 - MGP_CASTEiJ_P0075794 Mmd2 protein_coding protein_coding MGP_CASTEiJ_T0075795.1 MGP_CASTEiJ_G0029416.1 mouse_genomes_project 5 146191528 146193404 - Mmd2 protein_coding retained_intron MGP_CASTEiJ_T0075796.1 MGP_CASTEiJ_G0029416.1 mouse_genomes_project 5 146192830 146220262 - Mmd2 protein_coding processed_transcript MGP_CASTEiJ_T0070970.1 MGP_CASTEiJ_G0028516.1 mouse_genomes_project 5 28362203 28369439 - MGP_CASTEiJ_P0070970 Slc30a3 protein_coding protein_coding MGP_CASTEiJ_T0070971.1 MGP_CASTEiJ_G0028516.1 mouse_genomes_project 5 28363500 28364430 - MGP_CASTEiJ_P0070971 Slc30a3 protein_coding protein_coding MGP_CASTEiJ_T0070972.1 MGP_CASTEiJ_G0028516.1 mouse_genomes_project 5 28364855 28369551 - MGP_CASTEiJ_P0070972 Slc30a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070973.1 MGP_CASTEiJ_G0028516.1 mouse_genomes_project 5 28365422 28370960 - MGP_CASTEiJ_P0070973 Slc30a3 protein_coding protein_coding MGP_CASTEiJ_T0070974.1 MGP_CASTEiJ_G0028516.1 mouse_genomes_project 5 28365458 28386541 - MGP_CASTEiJ_P0070974 Slc30a3 protein_coding protein_coding MGP_CASTEiJ_T0098620.1 MGP_CASTEiJ_G0035551.1 mouse_genomes_project 5 121740683 121740792 + n-R5s176 rRNA rRNA MGP_CASTEiJ_T0001517.1 MGP_CASTEiJ_G0001442.1 mouse_genomes_project 5 46975758 46978698 - TEC TEC MGP_CASTEiJ_T0008129.1 MGP_CASTEiJ_G0006623.1 mouse_genomes_project 5 120533675 120542700 + 4930413E15Rik lincRNA lincRNA MGP_CASTEiJ_T0008020.1 MGP_CASTEiJ_G0006553.1 mouse_genomes_project 5 99825192 99834087 + lincRNA lincRNA MGP_CASTEiJ_T0001782.1 MGP_CASTEiJ_G0001704.1 mouse_genomes_project 5 133449539 133452905 - TEC TEC MGP_CASTEiJ_T0071606.1 MGP_CASTEiJ_G0028614.1 mouse_genomes_project 5 35805960 35828733 - MGP_CASTEiJ_P0071606 Nsg1 protein_coding protein_coding MGP_CASTEiJ_T0071607.1 MGP_CASTEiJ_G0028614.1 mouse_genomes_project 5 35806905 35807600 - MGP_CASTEiJ_P0071607 Nsg1 protein_coding protein_coding MGP_CASTEiJ_T0071608.1 MGP_CASTEiJ_G0028614.1 mouse_genomes_project 5 35807026 35827857 - MGP_CASTEiJ_P0071608 Nsg1 protein_coding protein_coding MGP_CASTEiJ_T0071609.1 MGP_CASTEiJ_G0028614.1 mouse_genomes_project 5 35807313 35828231 - MGP_CASTEiJ_P0071609 Nsg1 protein_coding protein_coding MGP_CASTEiJ_T0071610.1 MGP_CASTEiJ_G0028614.1 mouse_genomes_project 5 35813484 35828188 - MGP_CASTEiJ_P0071610 Nsg1 protein_coding protein_coding MGP_CASTEiJ_T0071611.1 MGP_CASTEiJ_G0028614.1 mouse_genomes_project 5 35824158 35828299 - Nsg1 protein_coding retained_intron MGP_CASTEiJ_T0071612.1 MGP_CASTEiJ_G0028614.1 mouse_genomes_project 5 35827731 35828231 - MGP_CASTEiJ_P0071612 Nsg1 protein_coding protein_coding MGP_CASTEiJ_T0001611.1 MGP_CASTEiJ_G0001535.1 mouse_genomes_project 5 68022100 68023679 - TEC TEC MGP_CASTEiJ_T0004685.1 MGP_CASTEiJ_G0004047.1 mouse_genomes_project 5 124036511 124045887 + Gm15637 antisense antisense MGP_CASTEiJ_T0073170.1 MGP_CASTEiJ_G0028934.1 mouse_genomes_project 5 105807488 105830825 - MGP_CASTEiJ_P0073170 protein_coding protein_coding MGP_CASTEiJ_T0102366.1 MGP_CASTEiJ_G0039091.1 mouse_genomes_project 5 153262764 153262987 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0070171.1 MGP_CASTEiJ_G0028376.1 mouse_genomes_project 5 579446 699766 - MGP_CASTEiJ_P0070171 Ankib1 protein_coding protein_coding MGP_CASTEiJ_T0070172.1 MGP_CASTEiJ_G0028376.1 mouse_genomes_project 5 582904 591613 - Ankib1 protein_coding retained_intron MGP_CASTEiJ_T0070173.1 MGP_CASTEiJ_G0028376.1 mouse_genomes_project 5 583348 689535 - MGP_CASTEiJ_P0070173 Ankib1 protein_coding protein_coding MGP_CASTEiJ_T0070174.1 MGP_CASTEiJ_G0028376.1 mouse_genomes_project 5 584269 584698 - Ankib1 protein_coding retained_intron MGP_CASTEiJ_T0070175.1 MGP_CASTEiJ_G0028376.1 mouse_genomes_project 5 590052 591350 - Ankib1 protein_coding retained_intron MGP_CASTEiJ_T0070176.1 MGP_CASTEiJ_G0028376.1 mouse_genomes_project 5 627484 699628 - Ankib1 protein_coding retained_intron MGP_CASTEiJ_T0014400.1 MGP_CASTEiJ_G0012563.1 mouse_genomes_project 5 22588281 22588558 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008186.1 MGP_CASTEiJ_G0006659.1 mouse_genomes_project 5 130833955 130834836 + Gm42500 lincRNA lincRNA MGP_CASTEiJ_T0074788.1 MGP_CASTEiJ_G0029226.1 mouse_genomes_project 5 131464036 131469082 + MGP_CASTEiJ_P0074788 Ran protein_coding protein_coding MGP_CASTEiJ_T0074789.1 MGP_CASTEiJ_G0029226.1 mouse_genomes_project 5 131464107 131470647 + MGP_CASTEiJ_P0074789 Ran protein_coding unknown_likely_coding MGP_CASTEiJ_T0074790.1 MGP_CASTEiJ_G0029226.1 mouse_genomes_project 5 131464169 131465609 + Ran protein_coding processed_transcript MGP_CASTEiJ_T0074791.1 MGP_CASTEiJ_G0029226.1 mouse_genomes_project 5 131464239 131469082 + MGP_CASTEiJ_P0074791 Ran protein_coding protein_coding MGP_CASTEiJ_T0071902.1 MGP_CASTEiJ_G0028662.1 mouse_genomes_project 5 51560650 51762052 + MGP_CASTEiJ_P0071902 protein_coding protein_coding MGP_CASTEiJ_T0071903.1 MGP_CASTEiJ_G0028662.1 mouse_genomes_project 5 51661484 51664256 + protein_coding retained_intron MGP_CASTEiJ_T0071904.1 MGP_CASTEiJ_G0028662.1 mouse_genomes_project 5 51701083 51766187 + MGP_CASTEiJ_P0071904 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071905.1 MGP_CASTEiJ_G0028662.1 mouse_genomes_project 5 51732796 51757855 + protein_coding processed_transcript MGP_CASTEiJ_T0071906.1 MGP_CASTEiJ_G0028662.1 mouse_genomes_project 5 51738719 51753999 + protein_coding processed_transcript MGP_CASTEiJ_T0071907.1 MGP_CASTEiJ_G0028662.1 mouse_genomes_project 5 51738878 51753999 + protein_coding processed_transcript MGP_CASTEiJ_T0071908.1 MGP_CASTEiJ_G0028662.1 mouse_genomes_project 5 51750579 51754001 + protein_coding retained_intron MGP_CASTEiJ_T0071909.1 MGP_CASTEiJ_G0028662.1 mouse_genomes_project 5 51757613 51764124 + protein_coding retained_intron MGP_CASTEiJ_T0075483.1 MGP_CASTEiJ_G0029349.1 mouse_genomes_project 5 140852862 140889214 + MGP_CASTEiJ_P0075483 Zcwpw1 protein_coding protein_coding MGP_CASTEiJ_T0075484.1 MGP_CASTEiJ_G0029349.1 mouse_genomes_project 5 140860513 140863726 + Zcwpw1 protein_coding retained_intron MGP_CASTEiJ_T0075485.1 MGP_CASTEiJ_G0029349.1 mouse_genomes_project 5 140866971 140868598 + Zcwpw1 protein_coding retained_intron MGP_CASTEiJ_T0075486.1 MGP_CASTEiJ_G0029349.1 mouse_genomes_project 5 140867254 140879279 + Zcwpw1 protein_coding processed_transcript MGP_CASTEiJ_T0075487.1 MGP_CASTEiJ_G0029349.1 mouse_genomes_project 5 140878465 140888914 + MGP_CASTEiJ_P0075487 Zcwpw1 protein_coding protein_coding MGP_CASTEiJ_T0074764.1 MGP_CASTEiJ_G0029221.1 mouse_genomes_project 5 130127545 130173463 - MGP_CASTEiJ_P0074764 Tmem132d protein_coding unknown_likely_coding MGP_CASTEiJ_T0074765.1 MGP_CASTEiJ_G0029221.1 mouse_genomes_project 5 130130405 130815681 - MGP_CASTEiJ_P0074765 Tmem132d protein_coding protein_coding MGP_CASTEiJ_T0074766.1 MGP_CASTEiJ_G0029221.1 mouse_genomes_project 5 130642643 130649717 - Tmem132d protein_coding processed_transcript MGP_CASTEiJ_T0074767.1 MGP_CASTEiJ_G0029221.1 mouse_genomes_project 5 130642748 130649655 - Tmem132d protein_coding processed_transcript MGP_CASTEiJ_T0070272.1 MGP_CASTEiJ_G0028391.1 mouse_genomes_project 5 3773342 4367834 - MGP_CASTEiJ_P0070272 Zfp804b protein_coding protein_coding MGP_CASTEiJ_T0070273.1 MGP_CASTEiJ_G0028391.1 mouse_genomes_project 5 3773362 3887827 - MGP_CASTEiJ_P0070273 Zfp804b protein_coding protein_coding MGP_CASTEiJ_T0014487.1 MGP_CASTEiJ_G0012650.1 mouse_genomes_project 5 58540325 58540959 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008172.1 MGP_CASTEiJ_G0006649.1 mouse_genomes_project 5 128780558 128781668 - Gm42592 lincRNA lincRNA MGP_CASTEiJ_T0004574.1 MGP_CASTEiJ_G0003966.1 mouse_genomes_project 5 65801942 65802493 - Gm15949 antisense antisense MGP_CASTEiJ_T0014582.1 MGP_CASTEiJ_G0012745.1 mouse_genomes_project 5 104073710 104073932 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075245.1 MGP_CASTEiJ_G0029306.1 mouse_genomes_project 5 139076635 139080989 + MGP_CASTEiJ_P0075245 Alkbh4 protein_coding protein_coding MGP_CASTEiJ_T0075246.1 MGP_CASTEiJ_G0029306.1 mouse_genomes_project 5 139076643 139082087 + MGP_CASTEiJ_P0075246 Alkbh4 protein_coding protein_coding MGP_CASTEiJ_T0075247.1 MGP_CASTEiJ_G0029306.1 mouse_genomes_project 5 139076647 139081255 + MGP_CASTEiJ_P0075247 Alkbh4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075248.1 MGP_CASTEiJ_G0029306.1 mouse_genomes_project 5 139076691 139080980 + MGP_CASTEiJ_P0075248 Alkbh4 protein_coding protein_coding MGP_CASTEiJ_T0075249.1 MGP_CASTEiJ_G0029306.1 mouse_genomes_project 5 139079257 139082090 + MGP_CASTEiJ_P0075249 Alkbh4 protein_coding protein_coding MGP_CASTEiJ_T0074342.1 MGP_CASTEiJ_G0029156.1 mouse_genomes_project 5 124569517 124641220 - MGP_CASTEiJ_P0074342 Ift81 protein_coding protein_coding MGP_CASTEiJ_T0074343.1 MGP_CASTEiJ_G0029156.1 mouse_genomes_project 5 124569521 124582668 - Ift81 protein_coding retained_intron MGP_CASTEiJ_T0074344.1 MGP_CASTEiJ_G0029156.1 mouse_genomes_project 5 124590835 124596796 - Ift81 protein_coding processed_transcript MGP_CASTEiJ_T0074345.1 MGP_CASTEiJ_G0029156.1 mouse_genomes_project 5 124614920 124629138 - MGP_CASTEiJ_P0074345 Ift81 protein_coding protein_coding MGP_CASTEiJ_T0074346.1 MGP_CASTEiJ_G0029156.1 mouse_genomes_project 5 124627834 124641208 - Ift81 protein_coding retained_intron MGP_CASTEiJ_T0074347.1 MGP_CASTEiJ_G0029156.1 mouse_genomes_project 5 124627960 124641147 - MGP_CASTEiJ_P0074347 Ift81 protein_coding protein_coding MGP_CASTEiJ_T0074348.1 MGP_CASTEiJ_G0029156.1 mouse_genomes_project 5 124627995 124641203 - MGP_CASTEiJ_P0074348 Ift81 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074349.1 MGP_CASTEiJ_G0029156.1 mouse_genomes_project 5 124631399 124633837 - Ift81 protein_coding retained_intron MGP_CASTEiJ_T0074350.1 MGP_CASTEiJ_G0029156.1 mouse_genomes_project 5 124633500 124641218 - MGP_CASTEiJ_P0074350 Ift81 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001781.1 MGP_CASTEiJ_G0001703.1 mouse_genomes_project 5 133181080 133181506 - TEC TEC MGP_CASTEiJ_T0070728.1 MGP_CASTEiJ_G0028473.1 mouse_genomes_project 5 22995164 23093921 + MGP_CASTEiJ_P0070728 Actr3b protein_coding protein_coding MGP_CASTEiJ_T0070729.1 MGP_CASTEiJ_G0028473.1 mouse_genomes_project 5 22995249 23016167 + Actr3b protein_coding processed_transcript MGP_CASTEiJ_T0070730.1 MGP_CASTEiJ_G0028473.1 mouse_genomes_project 5 22995249 23093359 + MGP_CASTEiJ_P0070730 Actr3b protein_coding unknown_likely_coding MGP_CASTEiJ_T0099893.1 MGP_CASTEiJ_G0036806.1 mouse_genomes_project 5 80445454 80445557 + Gm22974 snRNA snRNA MGP_CASTEiJ_T0011490.1 MGP_CASTEiJ_G0009662.1 mouse_genomes_project 5 71124506 71153493 + MGP_CASTEiJ_P0011490 Atp10d polymorphic_pseudogene protein_coding MGP_CASTEiJ_T0011491.1 MGP_CASTEiJ_G0009662.1 mouse_genomes_project 5 71124506 71218441 + MGP_CASTEiJ_P0011491 Atp10d polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0011492.1 MGP_CASTEiJ_G0009662.1 mouse_genomes_project 5 71124530 71152631 + Atp10d polymorphic_pseudogene retained_intron MGP_CASTEiJ_T0011493.1 MGP_CASTEiJ_G0009662.1 mouse_genomes_project 5 71186443 71218441 + Atp10d polymorphic_pseudogene processed_transcript MGP_CASTEiJ_T0011494.1 MGP_CASTEiJ_G0009662.1 mouse_genomes_project 5 71200948 71218427 + MGP_CASTEiJ_P0011494 Atp10d polymorphic_pseudogene protein_coding MGP_CASTEiJ_T0011495.1 MGP_CASTEiJ_G0009662.1 mouse_genomes_project 5 71200948 71218428 + Atp10d polymorphic_pseudogene processed_transcript MGP_CASTEiJ_T0072235.1 MGP_CASTEiJ_G0009662.1 mouse_genomes_project 5 71150614 71226969 + MGP_CASTEiJ_P0072235 Atp10d polymorphic_pseudogene unknown_likely_coding MGP_CASTEiJ_T0101148.1 MGP_CASTEiJ_G0038061.1 mouse_genomes_project 5 150982436 150982565 + Gm23202 snoRNA snoRNA MGP_CASTEiJ_T0014646.1 MGP_CASTEiJ_G0012809.1 mouse_genomes_project 5 138812491 138812648 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001604.1 MGP_CASTEiJ_G0001528.1 mouse_genomes_project 5 66465841 66466451 - TEC TEC MGP_CASTEiJ_T0101108.1 MGP_CASTEiJ_G0038021.1 mouse_genomes_project 5 34260469 34260593 + snoRNA snoRNA MGP_CASTEiJ_T0010432.1 MGP_CASTEiJ_G0008620.1 mouse_genomes_project 5 141241506 141241594 - Mir93 miRNA miRNA MGP_CASTEiJ_T0001554.1 MGP_CASTEiJ_G0001479.1 mouse_genomes_project 5 56241461 56242656 + TEC TEC MGP_CASTEiJ_T0004760.1 MGP_CASTEiJ_G0004100.1 mouse_genomes_project 5 153897776 153960365 - Gm15997 antisense antisense MGP_CASTEiJ_T0071644.1 MGP_CASTEiJ_G0028620.1 mouse_genomes_project 5 36024854 36151719 - MGP_CASTEiJ_P0071644 Slc2a9 protein_coding protein_coding MGP_CASTEiJ_T0071645.1 MGP_CASTEiJ_G0028620.1 mouse_genomes_project 5 36024854 36154840 - MGP_CASTEiJ_P0071645 Slc2a9 protein_coding protein_coding MGP_CASTEiJ_T0071646.1 MGP_CASTEiJ_G0028620.1 mouse_genomes_project 5 36024855 36163027 - MGP_CASTEiJ_P0071646 Slc2a9 protein_coding protein_coding MGP_CASTEiJ_T0071647.1 MGP_CASTEiJ_G0028620.1 mouse_genomes_project 5 36024887 36173214 - MGP_CASTEiJ_P0071647 Slc2a9 protein_coding protein_coding MGP_CASTEiJ_T0071648.1 MGP_CASTEiJ_G0028620.1 mouse_genomes_project 5 36025210 36175482 - MGP_CASTEiJ_P0071648 Slc2a9 protein_coding protein_coding MGP_CASTEiJ_T0071649.1 MGP_CASTEiJ_G0028620.1 mouse_genomes_project 5 36025210 36151571 - MGP_CASTEiJ_P0071649 Slc2a9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071650.1 MGP_CASTEiJ_G0028620.1 mouse_genomes_project 5 36026648 36151543 - MGP_CASTEiJ_P0071650 Slc2a9 protein_coding protein_coding MGP_CASTEiJ_T0071651.1 MGP_CASTEiJ_G0028620.1 mouse_genomes_project 5 36059528 36151595 - MGP_CASTEiJ_P0071651 Slc2a9 protein_coding protein_coding MGP_CASTEiJ_T0071652.1 MGP_CASTEiJ_G0028620.1 mouse_genomes_project 5 36088623 36115003 - Slc2a9 protein_coding processed_transcript MGP_CASTEiJ_T0071653.1 MGP_CASTEiJ_G0028620.1 mouse_genomes_project 5 36114823 36173137 - MGP_CASTEiJ_P0071653 Slc2a9 protein_coding protein_coding MGP_CASTEiJ_T0071654.1 MGP_CASTEiJ_G0028620.1 mouse_genomes_project 5 36146364 36173223 - Slc2a9 protein_coding processed_transcript MGP_CASTEiJ_T0071655.1 MGP_CASTEiJ_G0028620.1 mouse_genomes_project 5 36154446 36163000 - Slc2a9 protein_coding retained_intron MGP_CASTEiJ_T0070425.1 MGP_CASTEiJ_G0028415.1 mouse_genomes_project 5 14865189 14928323 + MGP_CASTEiJ_P0070425 Gnat3 protein_coding protein_coding MGP_CASTEiJ_T0099911.1 MGP_CASTEiJ_G0036824.1 mouse_genomes_project 5 111610970 111611077 + Gm22583 snRNA snRNA MGP_CASTEiJ_T0008050.1 MGP_CASTEiJ_G0006574.1 mouse_genomes_project 5 107007147 107012351 - Gm26872 lincRNA lincRNA MGP_CASTEiJ_T0008059.1 MGP_CASTEiJ_G0006582.1 mouse_genomes_project 5 109035715 109036190 - Gm42517 lincRNA lincRNA MGP_CASTEiJ_T0014667.1 MGP_CASTEiJ_G0012830.1 mouse_genomes_project 5 146739835 146740041 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070979.1 MGP_CASTEiJ_G0028518.1 mouse_genomes_project 5 28392965 28413994 + MGP_CASTEiJ_P0070979 Trim54 protein_coding protein_coding MGP_CASTEiJ_T0070980.1 MGP_CASTEiJ_G0028518.1 mouse_genomes_project 5 28392987 28413996 + MGP_CASTEiJ_P0070980 Trim54 protein_coding protein_coding MGP_CASTEiJ_T0001553.1 MGP_CASTEiJ_G0001478.1 mouse_genomes_project 5 56222764 56224632 + TEC TEC MGP_CASTEiJ_T0001414.1 MGP_CASTEiJ_G0001343.1 mouse_genomes_project 5 18146613 18147561 + TEC TEC MGP_CASTEiJ_T0070484.1 MGP_CASTEiJ_G0028427.1 mouse_genomes_project 5 18576536 18586943 + Lrrc17 protein_coding processed_transcript MGP_CASTEiJ_T0070485.1 MGP_CASTEiJ_G0028427.1 mouse_genomes_project 5 18576540 18614105 + MGP_CASTEiJ_P0070485 Lrrc17 protein_coding protein_coding MGP_CASTEiJ_T0075303.1 MGP_CASTEiJ_G0029315.1 mouse_genomes_project 5 139966220 139978246 + MGP_CASTEiJ_P0075303 Cldn15 protein_coding protein_coding MGP_CASTEiJ_T0075304.1 MGP_CASTEiJ_G0029315.1 mouse_genomes_project 5 139967479 139978232 + MGP_CASTEiJ_P0075304 Cldn15 protein_coding protein_coding MGP_CASTEiJ_T0075305.1 MGP_CASTEiJ_G0029315.1 mouse_genomes_project 5 139976316 139977403 + Cldn15 protein_coding processed_transcript MGP_CASTEiJ_T0072821.1 MGP_CASTEiJ_G0028855.1 mouse_genomes_project 5 92436464 92443035 - Naaa protein_coding retained_intron MGP_CASTEiJ_T0072822.1 MGP_CASTEiJ_G0028855.1 mouse_genomes_project 5 92438127 92460043 - MGP_CASTEiJ_P0072822 Naaa protein_coding protein_coding MGP_CASTEiJ_T0072823.1 MGP_CASTEiJ_G0028855.1 mouse_genomes_project 5 92438556 92460038 - MGP_CASTEiJ_P0072823 Naaa protein_coding protein_coding MGP_CASTEiJ_T0072824.1 MGP_CASTEiJ_G0028855.1 mouse_genomes_project 5 92439754 92454429 - MGP_CASTEiJ_P0072824 Naaa protein_coding protein_coding MGP_CASTEiJ_T0072825.1 MGP_CASTEiJ_G0028855.1 mouse_genomes_project 5 92457683 92460038 - Naaa protein_coding retained_intron MGP_CASTEiJ_T0075330.1 MGP_CASTEiJ_G0029321.1 mouse_genomes_project 5 140117694 140128167 - MGP_CASTEiJ_P0075330 Trim56 protein_coding protein_coding MGP_CASTEiJ_T0075331.1 MGP_CASTEiJ_G0029321.1 mouse_genomes_project 5 140125994 140128169 - MGP_CASTEiJ_P0075331 Trim56 protein_coding protein_coding MGP_CASTEiJ_T0072444.1 MGP_CASTEiJ_G0028755.1 mouse_genomes_project 5 75905217 75907036 + MGP_CASTEiJ_P0072444 C530008M17Rik protein_coding protein_coding MGP_CASTEiJ_T0072445.1 MGP_CASTEiJ_G0028755.1 mouse_genomes_project 5 75906370 76100498 + MGP_CASTEiJ_P0072445 C530008M17Rik protein_coding protein_coding MGP_CASTEiJ_T0072446.1 MGP_CASTEiJ_G0028755.1 mouse_genomes_project 5 75906372 75907833 + C530008M17Rik protein_coding processed_transcript MGP_CASTEiJ_T0072447.1 MGP_CASTEiJ_G0028755.1 mouse_genomes_project 5 75906408 76043762 + C530008M17Rik protein_coding processed_transcript MGP_CASTEiJ_T0072448.1 MGP_CASTEiJ_G0028755.1 mouse_genomes_project 5 76006634 76138685 + MGP_CASTEiJ_P0072448 C530008M17Rik protein_coding protein_coding MGP_CASTEiJ_T0072449.1 MGP_CASTEiJ_G0028755.1 mouse_genomes_project 5 76064374 76102275 + MGP_CASTEiJ_P0072449 C530008M17Rik protein_coding protein_coding MGP_CASTEiJ_T0072450.1 MGP_CASTEiJ_G0028755.1 mouse_genomes_project 5 76100215 76138900 + MGP_CASTEiJ_P0072450 C530008M17Rik protein_coding protein_coding MGP_CASTEiJ_T0072451.1 MGP_CASTEiJ_G0028755.1 mouse_genomes_project 5 76100215 76138909 + MGP_CASTEiJ_P0072451 C530008M17Rik protein_coding protein_coding MGP_CASTEiJ_T0072452.1 MGP_CASTEiJ_G0028755.1 mouse_genomes_project 5 76100235 76102277 + MGP_CASTEiJ_P0072452 C530008M17Rik protein_coding protein_coding MGP_CASTEiJ_T0072453.1 MGP_CASTEiJ_G0028755.1 mouse_genomes_project 5 76102858 76138911 + MGP_CASTEiJ_P0072453 C530008M17Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0072454.1 MGP_CASTEiJ_G0028755.1 mouse_genomes_project 5 76123587 76131845 + C530008M17Rik protein_coding retained_intron MGP_CASTEiJ_T0072455.1 MGP_CASTEiJ_G0028755.1 mouse_genomes_project 5 76131459 76133798 + MGP_CASTEiJ_P0072455 C530008M17Rik protein_coding protein_coding MGP_CASTEiJ_T0072456.1 MGP_CASTEiJ_G0028755.1 mouse_genomes_project 5 76134560 76136028 + C530008M17Rik protein_coding processed_transcript MGP_CASTEiJ_T0073586.1 MGP_CASTEiJ_G0029013.1 mouse_genomes_project 5 113381776 113543925 - MGP_CASTEiJ_P0073586 Sez6l protein_coding protein_coding MGP_CASTEiJ_T0073587.1 MGP_CASTEiJ_G0029013.1 mouse_genomes_project 5 113381781 113544032 - MGP_CASTEiJ_P0073587 Sez6l protein_coding protein_coding MGP_CASTEiJ_T0073588.1 MGP_CASTEiJ_G0029013.1 mouse_genomes_project 5 113381790 113544242 - MGP_CASTEiJ_P0073588 Sez6l protein_coding protein_coding MGP_CASTEiJ_T0073589.1 MGP_CASTEiJ_G0029013.1 mouse_genomes_project 5 113384440 113544234 - MGP_CASTEiJ_P0073589 Sez6l protein_coding protein_coding MGP_CASTEiJ_T0001622.1 MGP_CASTEiJ_G0001546.1 mouse_genomes_project 5 71881771 71884128 - TEC TEC MGP_CASTEiJ_T0001623.1 MGP_CASTEiJ_G0001546.1 mouse_genomes_project 5 71883480 71884128 - TEC pseudogene MGP_CASTEiJ_T0014674.1 MGP_CASTEiJ_G0012837.1 mouse_genomes_project 5 148514378 148514549 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074703.1 MGP_CASTEiJ_G0029210.1 mouse_genomes_project 5 127169467 127196341 - MGP_CASTEiJ_P0074703 Ncor2 protein_coding protein_coding MGP_CASTEiJ_T0074704.1 MGP_CASTEiJ_G0029210.1 mouse_genomes_project 5 127169467 127344955 - MGP_CASTEiJ_P0074704 Ncor2 protein_coding protein_coding MGP_CASTEiJ_T0074705.1 MGP_CASTEiJ_G0029210.1 mouse_genomes_project 5 127169467 127344955 - MGP_CASTEiJ_P0074705 Ncor2 protein_coding protein_coding MGP_CASTEiJ_T0074706.1 MGP_CASTEiJ_G0029210.1 mouse_genomes_project 5 127169469 127344955 - MGP_CASTEiJ_P0074706 Ncor2 protein_coding protein_coding MGP_CASTEiJ_T0074707.1 MGP_CASTEiJ_G0029210.1 mouse_genomes_project 5 127169476 127344946 - MGP_CASTEiJ_P0074707 Ncor2 protein_coding protein_coding MGP_CASTEiJ_T0074708.1 MGP_CASTEiJ_G0029210.1 mouse_genomes_project 5 127170149 127344955 - MGP_CASTEiJ_P0074708 Ncor2 protein_coding protein_coding MGP_CASTEiJ_T0074709.1 MGP_CASTEiJ_G0029210.1 mouse_genomes_project 5 127170149 127289736 - MGP_CASTEiJ_P0074709 Ncor2 protein_coding protein_coding MGP_CASTEiJ_T0074710.1 MGP_CASTEiJ_G0029210.1 mouse_genomes_project 5 127170206 127179036 - MGP_CASTEiJ_P0074710 Ncor2 protein_coding protein_coding MGP_CASTEiJ_T0074711.1 MGP_CASTEiJ_G0029210.1 mouse_genomes_project 5 127170448 127178575 - MGP_CASTEiJ_P0074711 Ncor2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074712.1 MGP_CASTEiJ_G0029210.1 mouse_genomes_project 5 127170546 127176733 - Ncor2 protein_coding retained_intron MGP_CASTEiJ_T0074713.1 MGP_CASTEiJ_G0029210.1 mouse_genomes_project 5 127178609 127180436 - MGP_CASTEiJ_P0074713 Ncor2 protein_coding protein_coding MGP_CASTEiJ_T0074714.1 MGP_CASTEiJ_G0029210.1 mouse_genomes_project 5 127178615 127179601 - Ncor2 protein_coding retained_intron MGP_CASTEiJ_T0074715.1 MGP_CASTEiJ_G0029210.1 mouse_genomes_project 5 127184308 127214838 - MGP_CASTEiJ_P0074715 Ncor2 protein_coding protein_coding MGP_CASTEiJ_T0074716.1 MGP_CASTEiJ_G0029210.1 mouse_genomes_project 5 127204222 127212425 - Ncor2 protein_coding retained_intron MGP_CASTEiJ_T0074717.1 MGP_CASTEiJ_G0029210.1 mouse_genomes_project 5 127207366 127214849 - MGP_CASTEiJ_P0074717 Ncor2 protein_coding protein_coding MGP_CASTEiJ_T0014616.1 MGP_CASTEiJ_G0012779.1 mouse_genomes_project 5 116001503 116002086 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008238.1 MGP_CASTEiJ_G0006698.1 mouse_genomes_project 5 153090728 153099378 + lincRNA lincRNA MGP_CASTEiJ_T0070918.1 MGP_CASTEiJ_G0028508.1 mouse_genomes_project 5 28170233 28172796 - MGP_CASTEiJ_P0070918 Ost4 protein_coding protein_coding MGP_CASTEiJ_T0070919.1 MGP_CASTEiJ_G0028508.1 mouse_genomes_project 5 28170877 28172733 - MGP_CASTEiJ_P0070919 Ost4 protein_coding protein_coding MGP_CASTEiJ_T0008011.1 MGP_CASTEiJ_G0006547.1 mouse_genomes_project 5 98364510 98378073 - 1700010H22Rik lincRNA lincRNA MGP_CASTEiJ_T0008012.1 MGP_CASTEiJ_G0006547.1 mouse_genomes_project 5 98374246 98378151 - 1700010H22Rik lincRNA lincRNA MGP_CASTEiJ_T0008013.1 MGP_CASTEiJ_G0006547.1 mouse_genomes_project 5 98375567 98377909 - 1700010H22Rik lincRNA lincRNA MGP_CASTEiJ_T0008037.1 MGP_CASTEiJ_G0006566.1 mouse_genomes_project 5 104642330 104672800 + D930016D06Rik lincRNA lincRNA MGP_CASTEiJ_T0008038.1 MGP_CASTEiJ_G0006566.1 mouse_genomes_project 5 104642464 104656893 + D930016D06Rik lincRNA lincRNA MGP_CASTEiJ_T0008039.1 MGP_CASTEiJ_G0006566.1 mouse_genomes_project 5 104658240 104670622 + D930016D06Rik lincRNA lincRNA MGP_CASTEiJ_T0008040.1 MGP_CASTEiJ_G0006566.1 mouse_genomes_project 5 104658786 104670029 + D930016D06Rik lincRNA lincRNA MGP_CASTEiJ_T0008041.1 MGP_CASTEiJ_G0006566.1 mouse_genomes_project 5 104658828 104672047 + D930016D06Rik lincRNA lincRNA MGP_CASTEiJ_T0014483.1 MGP_CASTEiJ_G0012646.1 mouse_genomes_project 5 57819742 57820122 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007917.1 MGP_CASTEiJ_G0006468.1 mouse_genomes_project 5 41524193 41525235 - Gm42555 lincRNA lincRNA MGP_CASTEiJ_T0001744.1 MGP_CASTEiJ_G0001667.1 mouse_genomes_project 5 124170594 124172944 + TEC TEC MGP_CASTEiJ_T0072384.1 MGP_CASTEiJ_G0028743.1 mouse_genomes_project 5 74104813 74155492 - MGP_CASTEiJ_P0072384 Chic2 protein_coding protein_coding MGP_CASTEiJ_T0072385.1 MGP_CASTEiJ_G0028743.1 mouse_genomes_project 5 74119013 74155030 - Chic2 protein_coding retained_intron MGP_CASTEiJ_T0071555.1 MGP_CASTEiJ_G0028606.1 mouse_genomes_project 5 34650659 34715064 + MGP_CASTEiJ_P0071555 Jakmip1 protein_coding protein_coding MGP_CASTEiJ_T0071556.1 MGP_CASTEiJ_G0028606.1 mouse_genomes_project 5 34651435 34707000 + Jakmip1 protein_coding processed_transcript MGP_CASTEiJ_T0071557.1 MGP_CASTEiJ_G0028606.1 mouse_genomes_project 5 34652190 34715160 + MGP_CASTEiJ_P0071557 Jakmip1 protein_coding protein_coding MGP_CASTEiJ_T0071558.1 MGP_CASTEiJ_G0028606.1 mouse_genomes_project 5 34652210 34714859 + MGP_CASTEiJ_P0071558 Jakmip1 protein_coding protein_coding MGP_CASTEiJ_T0071559.1 MGP_CASTEiJ_G0028606.1 mouse_genomes_project 5 34669645 34707020 + Jakmip1 protein_coding processed_transcript MGP_CASTEiJ_T0071560.1 MGP_CASTEiJ_G0028606.1 mouse_genomes_project 5 34670055 34708865 + Jakmip1 protein_coding retained_intron MGP_CASTEiJ_T0071561.1 MGP_CASTEiJ_G0028606.1 mouse_genomes_project 5 34670096 34730917 + MGP_CASTEiJ_P0071561 Jakmip1 protein_coding protein_coding MGP_CASTEiJ_T0071562.1 MGP_CASTEiJ_G0028606.1 mouse_genomes_project 5 34673492 34755121 + MGP_CASTEiJ_P0071562 Jakmip1 protein_coding protein_coding MGP_CASTEiJ_T0071563.1 MGP_CASTEiJ_G0028606.1 mouse_genomes_project 5 34673551 34709172 + Jakmip1 protein_coding retained_intron MGP_CASTEiJ_T0071564.1 MGP_CASTEiJ_G0028606.1 mouse_genomes_project 5 34707059 34776073 + MGP_CASTEiJ_P0071564 Jakmip1 protein_coding protein_coding MGP_CASTEiJ_T0071565.1 MGP_CASTEiJ_G0028606.1 mouse_genomes_project 5 34707059 34776073 + MGP_CASTEiJ_P0071565 Jakmip1 protein_coding protein_coding MGP_CASTEiJ_T0071566.1 MGP_CASTEiJ_G0028606.1 mouse_genomes_project 5 34714696 34715648 + Jakmip1 protein_coding retained_intron MGP_CASTEiJ_T0071567.1 MGP_CASTEiJ_G0028606.1 mouse_genomes_project 5 34752788 34754845 + Jakmip1 protein_coding retained_intron MGP_CASTEiJ_T0071568.1 MGP_CASTEiJ_G0028606.1 mouse_genomes_project 5 34756047 34779357 + MGP_CASTEiJ_P0071568 Jakmip1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0008003.1 MGP_CASTEiJ_G0006540.1 mouse_genomes_project 5 96645049 96657541 - Gm33370 lincRNA lincRNA MGP_CASTEiJ_T0001672.1 MGP_CASTEiJ_G0001595.1 mouse_genomes_project 5 101832356 101833978 + TEC TEC MGP_CASTEiJ_T0072674.1 MGP_CASTEiJ_G0028812.1 mouse_genomes_project 5 88330795 88330873 - MGP_CASTEiJ_P0072674 Gm11115 protein_coding protein_coding MGP_CASTEiJ_T0073436.1 MGP_CASTEiJ_G0028985.1 mouse_genomes_project 5 110993729 111041992 + MGP_CASTEiJ_P0073436 Golga3 protein_coding protein_coding MGP_CASTEiJ_T0073437.1 MGP_CASTEiJ_G0028985.1 mouse_genomes_project 5 110993885 111005427 + Golga3 protein_coding retained_intron MGP_CASTEiJ_T0073438.1 MGP_CASTEiJ_G0028985.1 mouse_genomes_project 5 110993907 111003493 + MGP_CASTEiJ_P0073438 Golga3 protein_coding protein_coding MGP_CASTEiJ_T0073439.1 MGP_CASTEiJ_G0028985.1 mouse_genomes_project 5 110993907 111038707 + MGP_CASTEiJ_P0073439 Golga3 protein_coding protein_coding MGP_CASTEiJ_T0073440.1 MGP_CASTEiJ_G0028985.1 mouse_genomes_project 5 110993925 111007341 + Golga3 protein_coding retained_intron MGP_CASTEiJ_T0001557.1 MGP_CASTEiJ_G0001482.1 mouse_genomes_project 5 56333649 56335392 + TEC TEC MGP_CASTEiJ_T0001438.1 MGP_CASTEiJ_G0001365.1 mouse_genomes_project 5 29003865 29004097 + TEC TEC MGP_CASTEiJ_T0014456.1 MGP_CASTEiJ_G0012619.1 mouse_genomes_project 5 42157416 42158053 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072793.1 MGP_CASTEiJ_G0028850.1 mouse_genomes_project 5 92168168 92204871 - MGP_CASTEiJ_P0072793 Cdkl2 protein_coding protein_coding MGP_CASTEiJ_T0072794.1 MGP_CASTEiJ_G0028850.1 mouse_genomes_project 5 92168168 92204870 - MGP_CASTEiJ_P0072794 Cdkl2 protein_coding protein_coding MGP_CASTEiJ_T0072795.1 MGP_CASTEiJ_G0028850.1 mouse_genomes_project 5 92169898 92204525 - MGP_CASTEiJ_P0072795 Cdkl2 protein_coding protein_coding MGP_CASTEiJ_T0072796.1 MGP_CASTEiJ_G0028850.1 mouse_genomes_project 5 92169917 92204501 - MGP_CASTEiJ_P0072796 Cdkl2 protein_coding protein_coding MGP_CASTEiJ_T0072797.1 MGP_CASTEiJ_G0028850.1 mouse_genomes_project 5 92170130 92179735 - Cdkl2 protein_coding retained_intron MGP_CASTEiJ_T0072798.1 MGP_CASTEiJ_G0028850.1 mouse_genomes_project 5 92184129 92192985 - MGP_CASTEiJ_P0072798 Cdkl2 protein_coding protein_coding MGP_CASTEiJ_T0072799.1 MGP_CASTEiJ_G0028850.1 mouse_genomes_project 5 92204095 92205714 - Cdkl2 protein_coding TEC MGP_CASTEiJ_T0070805.1 MGP_CASTEiJ_G0028489.1 mouse_genomes_project 5 27254992 27263322 + MGP_CASTEiJ_P0070805 Il6 protein_coding protein_coding MGP_CASTEiJ_T0070806.1 MGP_CASTEiJ_G0028489.1 mouse_genomes_project 5 27255016 27259719 + MGP_CASTEiJ_P0070806 Il6 protein_coding protein_coding MGP_CASTEiJ_T0070807.1 MGP_CASTEiJ_G0028489.1 mouse_genomes_project 5 27255040 27259670 + MGP_CASTEiJ_P0070807 Il6 protein_coding protein_coding MGP_CASTEiJ_T0102357.1 MGP_CASTEiJ_G0039082.1 mouse_genomes_project 5 110092926 110099321 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0004585.1 MGP_CASTEiJ_G0003976.1 mouse_genomes_project 5 73046347 73066298 + Usp46os1 antisense antisense MGP_CASTEiJ_T0014589.1 MGP_CASTEiJ_G0012752.1 mouse_genomes_project 5 106800155 106801011 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001526.1 MGP_CASTEiJ_G0001451.1 mouse_genomes_project 5 48775349 48777892 + TEC TEC MGP_CASTEiJ_T0014581.1 MGP_CASTEiJ_G0012744.1 mouse_genomes_project 5 103692868 103693444 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001560.1 MGP_CASTEiJ_G0001485.1 mouse_genomes_project 5 57377030 57380299 + TEC TEC MGP_CASTEiJ_T0014431.1 MGP_CASTEiJ_G0012594.1 mouse_genomes_project 5 30479125 30479343 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101608.1 MGP_CASTEiJ_G0038468.1 mouse_genomes_project 5 26408092 26408934 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0073182.1 MGP_CASTEiJ_G0028939.1 mouse_genomes_project 5 106183251 106305446 + MGP_CASTEiJ_P0073182 Lrrc8d protein_coding protein_coding MGP_CASTEiJ_T0073183.1 MGP_CASTEiJ_G0028939.1 mouse_genomes_project 5 106184063 106305441 + MGP_CASTEiJ_P0073183 Lrrc8d protein_coding protein_coding MGP_CASTEiJ_T0073184.1 MGP_CASTEiJ_G0028939.1 mouse_genomes_project 5 106184084 106213438 + Lrrc8d protein_coding retained_intron MGP_CASTEiJ_T0073185.1 MGP_CASTEiJ_G0028939.1 mouse_genomes_project 5 106184140 106213436 + Lrrc8d protein_coding processed_transcript MGP_CASTEiJ_T0073186.1 MGP_CASTEiJ_G0028939.1 mouse_genomes_project 5 106210589 106302059 + MGP_CASTEiJ_P0073186 Lrrc8d protein_coding protein_coding MGP_CASTEiJ_T0073187.1 MGP_CASTEiJ_G0028939.1 mouse_genomes_project 5 106210985 106302070 + MGP_CASTEiJ_P0073187 Lrrc8d protein_coding protein_coding MGP_CASTEiJ_T0073188.1 MGP_CASTEiJ_G0028939.1 mouse_genomes_project 5 106211191 106303861 + Lrrc8d protein_coding processed_transcript MGP_CASTEiJ_T0073189.1 MGP_CASTEiJ_G0028939.1 mouse_genomes_project 5 106211264 106302226 + MGP_CASTEiJ_P0073189 Lrrc8d protein_coding protein_coding MGP_CASTEiJ_T0073190.1 MGP_CASTEiJ_G0028939.1 mouse_genomes_project 5 106211431 106323126 + Lrrc8d protein_coding processed_transcript MGP_CASTEiJ_T0073191.1 MGP_CASTEiJ_G0028939.1 mouse_genomes_project 5 106314676 106323125 + Lrrc8d protein_coding processed_transcript MGP_CASTEiJ_T0071511.1 MGP_CASTEiJ_G0028595.1 mouse_genomes_project 5 33786579 33789128 + MGP_CASTEiJ_P0071511 Psapl1 protein_coding protein_coding MGP_CASTEiJ_T0014413.1 MGP_CASTEiJ_G0012576.1 mouse_genomes_project 5 25003842 25004828 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001741.1 MGP_CASTEiJ_G0001664.1 mouse_genomes_project 5 123656612 123659733 + TEC TEC MGP_CASTEiJ_T0014583.1 MGP_CASTEiJ_G0012746.1 mouse_genomes_project 5 104730894 104731082 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075096.1 MGP_CASTEiJ_G0029277.1 mouse_genomes_project 5 137939478 137972649 + Mlxipl protein_coding processed_transcript MGP_CASTEiJ_T0075097.1 MGP_CASTEiJ_G0029277.1 mouse_genomes_project 5 137957758 137973898 + Mlxipl protein_coding retained_intron MGP_CASTEiJ_T0075098.1 MGP_CASTEiJ_G0029277.1 mouse_genomes_project 5 137957769 137974513 + MGP_CASTEiJ_P0075098 Mlxipl protein_coding protein_coding MGP_CASTEiJ_T0075099.1 MGP_CASTEiJ_G0029277.1 mouse_genomes_project 5 137957771 137988934 + MGP_CASTEiJ_P0075099 Mlxipl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075100.1 MGP_CASTEiJ_G0029277.1 mouse_genomes_project 5 137957780 137988934 + MGP_CASTEiJ_P0075100 Mlxipl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075101.1 MGP_CASTEiJ_G0029277.1 mouse_genomes_project 5 137957780 137988934 + MGP_CASTEiJ_P0075101 Mlxipl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075102.1 MGP_CASTEiJ_G0029277.1 mouse_genomes_project 5 137957780 137988934 + MGP_CASTEiJ_P0075102 Mlxipl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075103.1 MGP_CASTEiJ_G0029277.1 mouse_genomes_project 5 137957785 137989393 + MGP_CASTEiJ_P0075103 Mlxipl protein_coding protein_coding MGP_CASTEiJ_T0075104.1 MGP_CASTEiJ_G0029277.1 mouse_genomes_project 5 137984626 137985627 + MGP_CASTEiJ_P0075104 Mlxipl protein_coding protein_coding MGP_CASTEiJ_T0075105.1 MGP_CASTEiJ_G0029277.1 mouse_genomes_project 5 137984647 137986748 + MGP_CASTEiJ_P0075105 Mlxipl protein_coding protein_coding MGP_CASTEiJ_T0072605.1 MGP_CASTEiJ_G0028789.1 mouse_genomes_project 5 87128413 87142728 - MGP_CASTEiJ_P0072605 Ugt2b37 protein_coding protein_coding MGP_CASTEiJ_T0014443.1 MGP_CASTEiJ_G0012606.1 mouse_genomes_project 5 35049723 35050203 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008201.1 MGP_CASTEiJ_G0006667.1 mouse_genomes_project 5 136858951 136859748 - Gm15627 lincRNA lincRNA MGP_CASTEiJ_T0007990.1 MGP_CASTEiJ_G0006527.1 mouse_genomes_project 5 86577631 86596164 - Gm43057 lincRNA lincRNA MGP_CASTEiJ_T0001616.1 MGP_CASTEiJ_G0001540.1 mouse_genomes_project 5 68144004 68147152 - TEC TEC MGP_CASTEiJ_T0071039.1 MGP_CASTEiJ_G0028526.1 mouse_genomes_project 5 28484524 28503987 - MGP_CASTEiJ_P0071039 Ppm1g protein_coding protein_coding MGP_CASTEiJ_T0071040.1 MGP_CASTEiJ_G0028526.1 mouse_genomes_project 5 28484528 28504109 - MGP_CASTEiJ_P0071040 Ppm1g protein_coding protein_coding MGP_CASTEiJ_T0071041.1 MGP_CASTEiJ_G0028526.1 mouse_genomes_project 5 28484964 28486943 - Ppm1g protein_coding retained_intron MGP_CASTEiJ_T0071043.1 MGP_CASTEiJ_G0028526.1 mouse_genomes_project 5 28486951 28489528 - MGP_CASTEiJ_P0071043 Ppm1g protein_coding protein_coding MGP_CASTEiJ_T0071044.1 MGP_CASTEiJ_G0028526.1 mouse_genomes_project 5 28502197 28503987 - Ppm1g protein_coding retained_intron MGP_CASTEiJ_T0075600.1 MGP_CASTEiJ_G0029376.1 mouse_genomes_project 5 142288811 142311119 - MGP_CASTEiJ_P0075600 Pdgfa protein_coding protein_coding MGP_CASTEiJ_T0075601.1 MGP_CASTEiJ_G0029376.1 mouse_genomes_project 5 142289313 142311035 - MGP_CASTEiJ_P0075601 Pdgfa protein_coding protein_coding MGP_CASTEiJ_T0075602.1 MGP_CASTEiJ_G0029376.1 mouse_genomes_project 5 142289732 142314203 - MGP_CASTEiJ_P0075602 Pdgfa protein_coding protein_coding MGP_CASTEiJ_T0075603.1 MGP_CASTEiJ_G0029376.1 mouse_genomes_project 5 142289760 142315485 - MGP_CASTEiJ_P0075603 Pdgfa protein_coding protein_coding MGP_CASTEiJ_T0075604.1 MGP_CASTEiJ_G0029376.1 mouse_genomes_project 5 142289934 142310362 - Pdgfa protein_coding processed_transcript MGP_CASTEiJ_T0075605.1 MGP_CASTEiJ_G0029376.1 mouse_genomes_project 5 142302315 142310565 - Pdgfa protein_coding processed_transcript MGP_CASTEiJ_T0075606.1 MGP_CASTEiJ_G0029376.1 mouse_genomes_project 5 142304495 142314117 - Pdgfa protein_coding processed_transcript MGP_CASTEiJ_T0070440.1 MGP_CASTEiJ_G0028418.1 mouse_genomes_project 5 17756480 17887128 - MGP_CASTEiJ_P0070440 Phtf2 protein_coding protein_coding MGP_CASTEiJ_T0070441.1 MGP_CASTEiJ_G0028418.1 mouse_genomes_project 5 17757487 17773206 - MGP_CASTEiJ_P0070441 Phtf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070442.1 MGP_CASTEiJ_G0028418.1 mouse_genomes_project 5 17781414 17857871 - Phtf2 protein_coding processed_transcript MGP_CASTEiJ_T0070443.1 MGP_CASTEiJ_G0028418.1 mouse_genomes_project 5 17781417 17811224 - MGP_CASTEiJ_P0070443 Phtf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070444.1 MGP_CASTEiJ_G0028418.1 mouse_genomes_project 5 17787517 17887081 - Phtf2 protein_coding retained_intron MGP_CASTEiJ_T0070445.1 MGP_CASTEiJ_G0028418.1 mouse_genomes_project 5 17792127 17887082 - Phtf2 protein_coding retained_intron MGP_CASTEiJ_T0070446.1 MGP_CASTEiJ_G0028418.1 mouse_genomes_project 5 17811200 17887049 - MGP_CASTEiJ_P0070446 Phtf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0101625.1 MGP_CASTEiJ_G0038481.1 mouse_genomes_project 5 85849880 85850880 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101626.1 MGP_CASTEiJ_G0038481.1 mouse_genomes_project 5 85849935 85851019 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0001455.1 MGP_CASTEiJ_G0001381.1 mouse_genomes_project 5 33100813 33103520 - TEC TEC MGP_CASTEiJ_T0004603.1 MGP_CASTEiJ_G0003991.1 mouse_genomes_project 5 92472891 92488081 + Gm43599 antisense antisense MGP_CASTEiJ_T0004676.1 MGP_CASTEiJ_G0004038.1 mouse_genomes_project 5 122131257 122150270 - Gm27199 antisense antisense MGP_CASTEiJ_T0074169.1 MGP_CASTEiJ_G0029128.1 mouse_genomes_project 5 123289634 123336272 + MGP_CASTEiJ_P0074169 Naa25 protein_coding protein_coding MGP_CASTEiJ_T0074170.1 MGP_CASTEiJ_G0029128.1 mouse_genomes_project 5 123289692 123332683 + MGP_CASTEiJ_P0074170 Naa25 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074171.1 MGP_CASTEiJ_G0029128.1 mouse_genomes_project 5 123289693 123320372 + Naa25 protein_coding retained_intron MGP_CASTEiJ_T0074172.1 MGP_CASTEiJ_G0029128.1 mouse_genomes_project 5 123289703 123333794 + MGP_CASTEiJ_P0074172 Naa25 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074174.1 MGP_CASTEiJ_G0029128.1 mouse_genomes_project 5 123333280 123338248 + MGP_CASTEiJ_P0074174 Naa25 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074175.1 MGP_CASTEiJ_G0029128.1 mouse_genomes_project 5 123333865 123334379 + Naa25 protein_coding processed_transcript MGP_CASTEiJ_T0001808.1 MGP_CASTEiJ_G0001730.1 mouse_genomes_project 5 136183576 136184497 + TEC TEC MGP_CASTEiJ_T0008227.1 MGP_CASTEiJ_G0006687.1 mouse_genomes_project 5 150216674 150225542 - B230303O12Rik lincRNA lincRNA MGP_CASTEiJ_T0070997.1 MGP_CASTEiJ_G0028522.1 mouse_genomes_project 5 28435462 28461258 - Gtf3c2 protein_coding retained_intron MGP_CASTEiJ_T0070998.1 MGP_CASTEiJ_G0028522.1 mouse_genomes_project 5 28435462 28461270 - MGP_CASTEiJ_P0070998 Gtf3c2 protein_coding protein_coding MGP_CASTEiJ_T0070999.1 MGP_CASTEiJ_G0028522.1 mouse_genomes_project 5 28435978 28461243 - MGP_CASTEiJ_P0070999 Gtf3c2 protein_coding protein_coding MGP_CASTEiJ_T0071000.1 MGP_CASTEiJ_G0028522.1 mouse_genomes_project 5 28436889 28438825 - Gtf3c2 protein_coding retained_intron MGP_CASTEiJ_T0071001.1 MGP_CASTEiJ_G0028522.1 mouse_genomes_project 5 28438939 28445608 - Gtf3c2 protein_coding retained_intron MGP_CASTEiJ_T0071002.1 MGP_CASTEiJ_G0028522.1 mouse_genomes_project 5 28446608 28461035 - Gtf3c2 protein_coding retained_intron MGP_CASTEiJ_T0071003.1 MGP_CASTEiJ_G0028522.1 mouse_genomes_project 5 28453468 28461037 - Gtf3c2 protein_coding retained_intron MGP_CASTEiJ_T0071004.1 MGP_CASTEiJ_G0028522.1 mouse_genomes_project 5 28453788 28455282 - MGP_CASTEiJ_P0071004 Gtf3c2 protein_coding protein_coding MGP_CASTEiJ_T0071005.1 MGP_CASTEiJ_G0028522.1 mouse_genomes_project 5 28454165 28461037 - MGP_CASTEiJ_P0071005 Gtf3c2 protein_coding protein_coding MGP_CASTEiJ_T0071006.1 MGP_CASTEiJ_G0028522.1 mouse_genomes_project 5 28454578 28460975 - MGP_CASTEiJ_P0071006 Gtf3c2 protein_coding protein_coding MGP_CASTEiJ_T0071007.1 MGP_CASTEiJ_G0028522.1 mouse_genomes_project 5 28454695 28455602 - MGP_CASTEiJ_P0071007 Gtf3c2 protein_coding protein_coding MGP_CASTEiJ_T0070765.1 MGP_CASTEiJ_G0028481.1 mouse_genomes_project 5 25654643 25665152 - MGP_CASTEiJ_P0070765 Shh protein_coding protein_coding MGP_CASTEiJ_T0070852.1 MGP_CASTEiJ_G0028498.1 mouse_genomes_project 5 27596071 27705626 - MGP_CASTEiJ_P0070852 Otof protein_coding protein_coding MGP_CASTEiJ_T0070853.1 MGP_CASTEiJ_G0028498.1 mouse_genomes_project 5 27596071 27705596 - MGP_CASTEiJ_P0070853 Otof protein_coding protein_coding MGP_CASTEiJ_T0070854.1 MGP_CASTEiJ_G0028498.1 mouse_genomes_project 5 27596077 27705626 - Otof protein_coding retained_intron MGP_CASTEiJ_T0070855.1 MGP_CASTEiJ_G0028498.1 mouse_genomes_project 5 27596304 27705553 - Otof protein_coding retained_intron MGP_CASTEiJ_T0070856.1 MGP_CASTEiJ_G0028498.1 mouse_genomes_project 5 27641837 27644984 - Otof protein_coding retained_intron MGP_CASTEiJ_T0071863.1 MGP_CASTEiJ_G0028656.1 mouse_genomes_project 5 50789391 50822822 + MGP_CASTEiJ_P0071863 Pi4k2b protein_coding protein_coding MGP_CASTEiJ_T0071864.1 MGP_CASTEiJ_G0028656.1 mouse_genomes_project 5 50789423 50799251 + MGP_CASTEiJ_P0071864 Pi4k2b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071865.1 MGP_CASTEiJ_G0028656.1 mouse_genomes_project 5 50789427 50822822 + MGP_CASTEiJ_P0071865 Pi4k2b protein_coding protein_coding MGP_CASTEiJ_T0071866.1 MGP_CASTEiJ_G0028656.1 mouse_genomes_project 5 50803863 50806748 + Pi4k2b protein_coding retained_intron MGP_CASTEiJ_T0010408.1 MGP_CASTEiJ_G0008596.1 mouse_genomes_project 5 116867020 116867081 + Mir7029 miRNA miRNA MGP_CASTEiJ_T0004709.1 MGP_CASTEiJ_G0004062.1 mouse_genomes_project 5 130711730 130717517 + Gm42817 antisense antisense MGP_CASTEiJ_T0007980.1 MGP_CASTEiJ_G0006520.1 mouse_genomes_project 5 76756831 76802569 + Gm34728 lincRNA lincRNA MGP_CASTEiJ_T0014591.1 MGP_CASTEiJ_G0012754.1 mouse_genomes_project 5 107158339 107159081 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071020.1 MGP_CASTEiJ_G0028524.1 mouse_genomes_project 5 28475087 28480761 + MGP_CASTEiJ_P0071020 Snx17 protein_coding protein_coding MGP_CASTEiJ_T0071021.1 MGP_CASTEiJ_G0028524.1 mouse_genomes_project 5 28475102 28477299 + MGP_CASTEiJ_P0071021 Snx17 protein_coding protein_coding MGP_CASTEiJ_T0071022.1 MGP_CASTEiJ_G0028524.1 mouse_genomes_project 5 28475154 28480755 + MGP_CASTEiJ_P0071022 Snx17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071023.1 MGP_CASTEiJ_G0028524.1 mouse_genomes_project 5 28475166 28480760 + Snx17 protein_coding retained_intron MGP_CASTEiJ_T0071024.1 MGP_CASTEiJ_G0028524.1 mouse_genomes_project 5 28475166 28478913 + MGP_CASTEiJ_P0071024 Snx17 protein_coding protein_coding MGP_CASTEiJ_T0071025.1 MGP_CASTEiJ_G0028524.1 mouse_genomes_project 5 28475195 28480761 + MGP_CASTEiJ_P0071025 Snx17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071026.1 MGP_CASTEiJ_G0028524.1 mouse_genomes_project 5 28475714 28481004 + Snx17 protein_coding retained_intron MGP_CASTEiJ_T0071027.1 MGP_CASTEiJ_G0028524.1 mouse_genomes_project 5 28476707 28478291 + Snx17 protein_coding retained_intron MGP_CASTEiJ_T0071028.1 MGP_CASTEiJ_G0028524.1 mouse_genomes_project 5 28477237 28479107 + Snx17 protein_coding retained_intron MGP_CASTEiJ_T0071029.1 MGP_CASTEiJ_G0028524.1 mouse_genomes_project 5 28477698 28479571 + Snx17 protein_coding retained_intron MGP_CASTEiJ_T0071030.1 MGP_CASTEiJ_G0028524.1 mouse_genomes_project 5 28477906 28480005 + Snx17 protein_coding processed_transcript MGP_CASTEiJ_T0075553.1 MGP_CASTEiJ_G0029366.1 mouse_genomes_project 5 141425581 141433438 - MGP_CASTEiJ_P0075553 Gal3st4 protein_coding protein_coding MGP_CASTEiJ_T0075554.1 MGP_CASTEiJ_G0029366.1 mouse_genomes_project 5 141425585 141433352 - MGP_CASTEiJ_P0075554 Gal3st4 protein_coding protein_coding MGP_CASTEiJ_T0075555.1 MGP_CASTEiJ_G0029366.1 mouse_genomes_project 5 141425598 141433399 - Gal3st4 protein_coding processed_transcript MGP_CASTEiJ_T0075556.1 MGP_CASTEiJ_G0029366.1 mouse_genomes_project 5 141425598 141433399 - MGP_CASTEiJ_P0075556 Gal3st4 protein_coding protein_coding MGP_CASTEiJ_T0075558.1 MGP_CASTEiJ_G0029366.1 mouse_genomes_project 5 141431593 141433347 - MGP_CASTEiJ_P0075558 Gal3st4 protein_coding protein_coding MGP_CASTEiJ_T0004720.1 MGP_CASTEiJ_G0004072.1 mouse_genomes_project 5 137839208 137853124 - Wbscr25 antisense antisense MGP_CASTEiJ_T0004721.1 MGP_CASTEiJ_G0004072.1 mouse_genomes_project 5 137844291 137852281 - Wbscr25 antisense antisense MGP_CASTEiJ_T0014548.1 MGP_CASTEiJ_G0012711.1 mouse_genomes_project 5 88097824 88098218 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014435.1 MGP_CASTEiJ_G0012598.1 mouse_genomes_project 5 31245250 31245562 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074679.1 MGP_CASTEiJ_G0029205.1 mouse_genomes_project 5 126805784 126814622 + Atp6v0a2 protein_coding processed_transcript MGP_CASTEiJ_T0074680.1 MGP_CASTEiJ_G0029205.1 mouse_genomes_project 5 126806264 126840574 + MGP_CASTEiJ_P0074680 Atp6v0a2 protein_coding protein_coding MGP_CASTEiJ_T0074681.1 MGP_CASTEiJ_G0029205.1 mouse_genomes_project 5 126806277 126838271 + MGP_CASTEiJ_P0074681 Atp6v0a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074682.1 MGP_CASTEiJ_G0029205.1 mouse_genomes_project 5 126806381 126818676 + Atp6v0a2 protein_coding retained_intron MGP_CASTEiJ_T0074683.1 MGP_CASTEiJ_G0029205.1 mouse_genomes_project 5 126830453 126834028 + Atp6v0a2 protein_coding processed_transcript MGP_CASTEiJ_T0074684.1 MGP_CASTEiJ_G0029205.1 mouse_genomes_project 5 126831995 126839733 + Atp6v0a2 protein_coding retained_intron MGP_CASTEiJ_T0074685.1 MGP_CASTEiJ_G0029205.1 mouse_genomes_project 5 126834331 126837948 + MGP_CASTEiJ_P0074685 Atp6v0a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001658.1 MGP_CASTEiJ_G0001581.1 mouse_genomes_project 5 93409357 93411256 - TEC TEC MGP_CASTEiJ_T0008204.1 MGP_CASTEiJ_G0006670.1 mouse_genomes_project 5 139912627 139934553 + 4933404O12Rik lincRNA lincRNA MGP_CASTEiJ_T0008205.1 MGP_CASTEiJ_G0006670.1 mouse_genomes_project 5 139912662 139931230 + 4933404O12Rik lincRNA lincRNA MGP_CASTEiJ_T0008206.1 MGP_CASTEiJ_G0006670.1 mouse_genomes_project 5 139912834 139931149 + 4933404O12Rik lincRNA lincRNA MGP_CASTEiJ_T0008207.1 MGP_CASTEiJ_G0006670.1 mouse_genomes_project 5 139912883 139934559 + 4933404O12Rik lincRNA lincRNA MGP_CASTEiJ_T0102356.1 MGP_CASTEiJ_G0039081.1 mouse_genomes_project 5 100117791 100274616 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0072615.1 MGP_CASTEiJ_G0028796.1 mouse_genomes_project 5 87466214 87482004 - MGP_CASTEiJ_P0072615 Sult1d1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0072616.1 MGP_CASTEiJ_G0028796.1 mouse_genomes_project 5 87466217 87470455 - Sult1d1 protein_coding processed_transcript MGP_CASTEiJ_T0099930.1 MGP_CASTEiJ_G0036843.1 mouse_genomes_project 5 142802023 142802130 + Gm26285 snRNA snRNA MGP_CASTEiJ_T0074124.1 MGP_CASTEiJ_G0029118.1 mouse_genomes_project 5 122512695 122538487 - MGP_CASTEiJ_P0074124 Oas3 protein_coding protein_coding MGP_CASTEiJ_T0074125.1 MGP_CASTEiJ_G0029118.1 mouse_genomes_project 5 122513803 122515846 - MGP_CASTEiJ_P0074125 Oas3 protein_coding protein_coding MGP_CASTEiJ_T0074126.1 MGP_CASTEiJ_G0029118.1 mouse_genomes_project 5 122514986 122517242 - Oas3 protein_coding retained_intron MGP_CASTEiJ_T0074127.1 MGP_CASTEiJ_G0029118.1 mouse_genomes_project 5 122524440 122538466 - Oas3 protein_coding retained_intron MGP_CASTEiJ_T0007898.1 MGP_CASTEiJ_G0006455.1 mouse_genomes_project 5 35470114 35470886 + Gm43763 lincRNA lincRNA MGP_CASTEiJ_T0070190.1 MGP_CASTEiJ_G0028379.1 mouse_genomes_project 5 803803 819967 - MGP_CASTEiJ_P0070190 protein_coding protein_coding MGP_CASTEiJ_T0070192.1 MGP_CASTEiJ_G0028379.1 mouse_genomes_project 5 803806 819941 - MGP_CASTEiJ_P0070192 protein_coding protein_coding MGP_CASTEiJ_T0070193.1 MGP_CASTEiJ_G0028379.1 mouse_genomes_project 5 816693 819930 - protein_coding processed_transcript MGP_CASTEiJ_T0017463.1 MGP_CASTEiJ_G0014934.1 mouse_genomes_project 5 153343441 153364997 - Gm15411 processed_transcript lincRNA MGP_CASTEiJ_T0017464.1 MGP_CASTEiJ_G0014934.1 mouse_genomes_project 5 153347497 153364968 - Gm15411 processed_transcript lincRNA MGP_CASTEiJ_T0017465.1 MGP_CASTEiJ_G0014934.1 mouse_genomes_project 5 153362968 153364997 - Gm15411 processed_transcript retained_intron MGP_CASTEiJ_T0007972.1 MGP_CASTEiJ_G0006513.1 mouse_genomes_project 5 75001798 75005981 - Gm19590 lincRNA lincRNA MGP_CASTEiJ_T0007877.1 MGP_CASTEiJ_G0006443.1 mouse_genomes_project 5 27133742 27138997 - Gm42450 lincRNA lincRNA MGP_CASTEiJ_T0071256.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31189016 31197181 + MGP_CASTEiJ_P0071256 Fgfr3 protein_coding protein_coding MGP_CASTEiJ_T0071257.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31189066 31206224 + MGP_CASTEiJ_P0071257 Fgfr3 protein_coding protein_coding MGP_CASTEiJ_T0071258.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31189066 31206223 + MGP_CASTEiJ_P0071258 Fgfr3 protein_coding protein_coding MGP_CASTEiJ_T0071259.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31189066 31206224 + MGP_CASTEiJ_P0071259 Fgfr3 protein_coding protein_coding MGP_CASTEiJ_T0071260.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31189134 31206219 + MGP_CASTEiJ_P0071260 Fgfr3 protein_coding protein_coding MGP_CASTEiJ_T0071261.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31189141 31204763 + MGP_CASTEiJ_P0071261 Fgfr3 protein_coding protein_coding MGP_CASTEiJ_T0071262.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31189647 31206224 + MGP_CASTEiJ_P0071262 Fgfr3 protein_coding protein_coding MGP_CASTEiJ_T0071263.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31189647 31206224 + MGP_CASTEiJ_P0071263 Fgfr3 protein_coding protein_coding MGP_CASTEiJ_T0071264.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31189785 31197350 + MGP_CASTEiJ_P0071264 Fgfr3 protein_coding protein_coding MGP_CASTEiJ_T0071265.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31190161 31201937 + Fgfr3 protein_coding retained_intron MGP_CASTEiJ_T0071266.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31191114 31197194 + MGP_CASTEiJ_P0071266 Fgfr3 protein_coding protein_coding MGP_CASTEiJ_T0071267.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31197081 31201890 + MGP_CASTEiJ_P0071267 Fgfr3 protein_coding protein_coding MGP_CASTEiJ_T0071268.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31197307 31202430 + Fgfr3 protein_coding retained_intron MGP_CASTEiJ_T0071269.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31197564 31202908 + MGP_CASTEiJ_P0071269 Fgfr3 protein_coding protein_coding MGP_CASTEiJ_T0071270.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31202398 31204008 + MGP_CASTEiJ_P0071270 Fgfr3 protein_coding protein_coding MGP_CASTEiJ_T0071271.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31202838 31204069 + Fgfr3 protein_coding retained_intron MGP_CASTEiJ_T0071272.1 MGP_CASTEiJ_G0028560.1 mouse_genomes_project 5 31203760 31204720 + Fgfr3 protein_coding retained_intron MGP_CASTEiJ_T0071978.1 MGP_CASTEiJ_G0028678.1 mouse_genomes_project 5 63591390 63670008 + MGP_CASTEiJ_P0071978 Fam114a1 protein_coding protein_coding MGP_CASTEiJ_T0071979.1 MGP_CASTEiJ_G0028678.1 mouse_genomes_project 5 63595022 63629417 + MGP_CASTEiJ_P0071979 Fam114a1 protein_coding protein_coding MGP_CASTEiJ_T0099885.1 MGP_CASTEiJ_G0036798.1 mouse_genomes_project 5 69055220 69055282 - Gm23067 snRNA snRNA MGP_CASTEiJ_T0071867.1 MGP_CASTEiJ_G0028657.1 mouse_genomes_project 5 50828907 50881273 + Zcchc4 protein_coding processed_transcript MGP_CASTEiJ_T0071868.1 MGP_CASTEiJ_G0028657.1 mouse_genomes_project 5 50836094 50881016 + MGP_CASTEiJ_P0071868 Zcchc4 protein_coding protein_coding MGP_CASTEiJ_T0071869.1 MGP_CASTEiJ_G0028657.1 mouse_genomes_project 5 50836094 50882112 + MGP_CASTEiJ_P0071869 Zcchc4 protein_coding protein_coding MGP_CASTEiJ_T0071870.1 MGP_CASTEiJ_G0028657.1 mouse_genomes_project 5 50836126 50853166 + Zcchc4 protein_coding retained_intron MGP_CASTEiJ_T0071871.1 MGP_CASTEiJ_G0028657.1 mouse_genomes_project 5 50836156 50849131 + MGP_CASTEiJ_P0071871 Zcchc4 protein_coding protein_coding MGP_CASTEiJ_T0071872.1 MGP_CASTEiJ_G0028657.1 mouse_genomes_project 5 50836162 50849163 + Zcchc4 protein_coding processed_transcript MGP_CASTEiJ_T0071873.1 MGP_CASTEiJ_G0028657.1 mouse_genomes_project 5 50851033 50876620 + Zcchc4 protein_coding processed_transcript MGP_CASTEiJ_T0071874.1 MGP_CASTEiJ_G0028657.1 mouse_genomes_project 5 50857298 50871451 + Zcchc4 protein_coding retained_intron MGP_CASTEiJ_T0007965.1 MGP_CASTEiJ_G0006507.1 mouse_genomes_project 5 73853701 73858237 + Gm42575 lincRNA lincRNA MGP_CASTEiJ_T0075792.1 MGP_CASTEiJ_G0029415.1 mouse_genomes_project 5 146126515 146130753 - MGP_CASTEiJ_P0075792 Papolb protein_coding protein_coding MGP_CASTEiJ_T0014529.1 MGP_CASTEiJ_G0012692.1 mouse_genomes_project 5 77272816 77273154 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001612.1 MGP_CASTEiJ_G0001536.1 mouse_genomes_project 5 68034475 68035501 - TEC TEC MGP_CASTEiJ_T0014662.1 MGP_CASTEiJ_G0012825.1 mouse_genomes_project 5 143363245 143363748 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076218.1 MGP_CASTEiJ_G0029503.1 mouse_genomes_project 5 154045146 154066830 - MGP_CASTEiJ_P0076218 Hsph1 protein_coding protein_coding MGP_CASTEiJ_T0076219.1 MGP_CASTEiJ_G0029503.1 mouse_genomes_project 5 154047413 154066997 - MGP_CASTEiJ_P0076219 Hsph1 protein_coding protein_coding MGP_CASTEiJ_T0076220.1 MGP_CASTEiJ_G0029503.1 mouse_genomes_project 5 154047708 154066868 - MGP_CASTEiJ_P0076220 Hsph1 protein_coding protein_coding MGP_CASTEiJ_T0076221.1 MGP_CASTEiJ_G0029503.1 mouse_genomes_project 5 154048032 154066997 - MGP_CASTEiJ_P0076221 Hsph1 protein_coding protein_coding MGP_CASTEiJ_T0076222.1 MGP_CASTEiJ_G0029503.1 mouse_genomes_project 5 154048318 154050040 - Hsph1 protein_coding retained_intron MGP_CASTEiJ_T0076223.1 MGP_CASTEiJ_G0029503.1 mouse_genomes_project 5 154049514 154066760 - MGP_CASTEiJ_P0076223 Hsph1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076224.1 MGP_CASTEiJ_G0029503.1 mouse_genomes_project 5 154050725 154052061 - Hsph1 protein_coding retained_intron MGP_CASTEiJ_T0076225.1 MGP_CASTEiJ_G0029503.1 mouse_genomes_project 5 154051555 154066997 - Hsph1 protein_coding retained_intron MGP_CASTEiJ_T0076226.1 MGP_CASTEiJ_G0029503.1 mouse_genomes_project 5 154060644 154067035 - MGP_CASTEiJ_P0076226 Hsph1 protein_coding protein_coding MGP_CASTEiJ_T0076227.1 MGP_CASTEiJ_G0029503.1 mouse_genomes_project 5 154061100 154066949 - MGP_CASTEiJ_P0076227 Hsph1 protein_coding protein_coding MGP_CASTEiJ_T0076228.1 MGP_CASTEiJ_G0029503.1 mouse_genomes_project 5 154062699 154067010 - MGP_CASTEiJ_P0076228 Hsph1 protein_coding protein_coding MGP_CASTEiJ_T0076229.1 MGP_CASTEiJ_G0029503.1 mouse_genomes_project 5 154062758 154064543 - Hsph1 protein_coding processed_transcript MGP_CASTEiJ_T0004656.1 MGP_CASTEiJ_G0004027.1 mouse_genomes_project 5 116689515 116690094 - 4930430O22Rik antisense antisense MGP_CASTEiJ_T0004657.1 MGP_CASTEiJ_G0004027.1 mouse_genomes_project 5 116689517 116690056 - 4930430O22Rik antisense antisense MGP_CASTEiJ_T0072962.1 MGP_CASTEiJ_G0028885.1 mouse_genomes_project 5 98363575 98364626 + MGP_CASTEiJ_P0072962 Gm11111 protein_coding protein_coding MGP_CASTEiJ_T0007861.1 MGP_CASTEiJ_G0006432.1 mouse_genomes_project 5 20938222 20966664 + lincRNA lincRNA MGP_CASTEiJ_T0101128.1 MGP_CASTEiJ_G0038041.1 mouse_genomes_project 5 87702523 87702646 - Gm24314 snoRNA snoRNA MGP_CASTEiJ_T0001511.1 MGP_CASTEiJ_G0001436.1 mouse_genomes_project 5 46888647 46891188 - TEC TEC MGP_CASTEiJ_T0075306.1 MGP_CASTEiJ_G0029316.1 mouse_genomes_project 5 139985301 139991173 - MGP_CASTEiJ_P0075306 Znhit1 protein_coding protein_coding MGP_CASTEiJ_T0075307.1 MGP_CASTEiJ_G0029316.1 mouse_genomes_project 5 139985326 139990052 - MGP_CASTEiJ_P0075307 Znhit1 protein_coding protein_coding MGP_CASTEiJ_T0075308.1 MGP_CASTEiJ_G0029316.1 mouse_genomes_project 5 139985331 139989980 - MGP_CASTEiJ_P0075308 Znhit1 protein_coding protein_coding MGP_CASTEiJ_T0075309.1 MGP_CASTEiJ_G0029316.1 mouse_genomes_project 5 139985433 139990695 - MGP_CASTEiJ_P0075309 Znhit1 protein_coding protein_coding MGP_CASTEiJ_T0075310.1 MGP_CASTEiJ_G0029316.1 mouse_genomes_project 5 139985457 139990384 - MGP_CASTEiJ_P0075310 Znhit1 protein_coding protein_coding MGP_CASTEiJ_T0075311.1 MGP_CASTEiJ_G0029316.1 mouse_genomes_project 5 139986041 139990660 - MGP_CASTEiJ_P0075311 Znhit1 protein_coding protein_coding MGP_CASTEiJ_T0074445.1 MGP_CASTEiJ_G0029169.1 mouse_genomes_project 5 125253815 125264797 - MGP_CASTEiJ_P0074445 Hpd protein_coding protein_coding MGP_CASTEiJ_T0074446.1 MGP_CASTEiJ_G0029169.1 mouse_genomes_project 5 125253880 125254938 - Hpd protein_coding processed_transcript MGP_CASTEiJ_T0074447.1 MGP_CASTEiJ_G0029169.1 mouse_genomes_project 5 125254109 125257941 - MGP_CASTEiJ_P0074447 Hpd protein_coding protein_coding MGP_CASTEiJ_T0074448.1 MGP_CASTEiJ_G0029169.1 mouse_genomes_project 5 125259546 125264792 - Hpd protein_coding retained_intron MGP_CASTEiJ_T0074449.1 MGP_CASTEiJ_G0029169.1 mouse_genomes_project 5 125259546 125264793 - MGP_CASTEiJ_P0074449 Hpd protein_coding protein_coding MGP_CASTEiJ_T0074450.1 MGP_CASTEiJ_G0029169.1 mouse_genomes_project 5 125262724 125264133 - Hpd protein_coding processed_transcript MGP_CASTEiJ_T0075312.1 MGP_CASTEiJ_G0029317.1 mouse_genomes_project 5 139990169 139999876 + MGP_CASTEiJ_P0075312 Plod3 protein_coding protein_coding MGP_CASTEiJ_T0075313.1 MGP_CASTEiJ_G0029317.1 mouse_genomes_project 5 139990529 139995267 + Plod3 protein_coding retained_intron MGP_CASTEiJ_T0075314.1 MGP_CASTEiJ_G0029317.1 mouse_genomes_project 5 139990627 139995909 + Plod3 protein_coding retained_intron MGP_CASTEiJ_T0075315.1 MGP_CASTEiJ_G0029317.1 mouse_genomes_project 5 139993487 139997384 + Plod3 protein_coding retained_intron MGP_CASTEiJ_T0075316.1 MGP_CASTEiJ_G0029317.1 mouse_genomes_project 5 139993684 139995267 + Plod3 protein_coding retained_intron MGP_CASTEiJ_T0075317.1 MGP_CASTEiJ_G0029317.1 mouse_genomes_project 5 139994802 139998384 + MGP_CASTEiJ_P0075317 Plod3 protein_coding protein_coding MGP_CASTEiJ_T0102348.1 MGP_CASTEiJ_G0039073.1 mouse_genomes_project 5 86943264 86944332 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0071965.1 MGP_CASTEiJ_G0028675.1 mouse_genomes_project 5 63403405 63435598 + MGP_CASTEiJ_P0071965 Klf3 protein_coding protein_coding MGP_CASTEiJ_T0071966.1 MGP_CASTEiJ_G0028675.1 mouse_genomes_project 5 63403594 63425949 + Klf3 protein_coding retained_intron MGP_CASTEiJ_T0071967.1 MGP_CASTEiJ_G0028675.1 mouse_genomes_project 5 63403649 63425002 + Klf3 protein_coding processed_transcript MGP_CASTEiJ_T0071968.1 MGP_CASTEiJ_G0028675.1 mouse_genomes_project 5 63414078 63432198 + MGP_CASTEiJ_P0071968 Klf3 protein_coding protein_coding MGP_CASTEiJ_T0071969.1 MGP_CASTEiJ_G0028675.1 mouse_genomes_project 5 63414079 63422159 + Klf3 protein_coding retained_intron MGP_CASTEiJ_T0071970.1 MGP_CASTEiJ_G0028675.1 mouse_genomes_project 5 63414123 63425073 + MGP_CASTEiJ_P0071970 Klf3 protein_coding protein_coding MGP_CASTEiJ_T0071971.1 MGP_CASTEiJ_G0028675.1 mouse_genomes_project 5 63417594 63428152 + Klf3 protein_coding retained_intron MGP_CASTEiJ_T0071972.1 MGP_CASTEiJ_G0028675.1 mouse_genomes_project 5 63425177 63429884 + MGP_CASTEiJ_P0071972 Klf3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071973.1 MGP_CASTEiJ_G0028675.1 mouse_genomes_project 5 63429514 63432266 + MGP_CASTEiJ_P0071973 Klf3 protein_coding protein_coding MGP_CASTEiJ_T0014385.1 MGP_CASTEiJ_G0012548.1 mouse_genomes_project 5 19377722 19378109 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017389.1 MGP_CASTEiJ_G0014910.1 mouse_genomes_project 5 28877766 28997441 + Gm43809 processed_transcript processed_transcript MGP_CASTEiJ_T0017390.1 MGP_CASTEiJ_G0014910.1 mouse_genomes_project 5 28898589 28997421 + Gm43809 processed_transcript processed_transcript MGP_CASTEiJ_T0076030.1 MGP_CASTEiJ_G0029465.1 mouse_genomes_project 5 149039174 149059129 + MGP_CASTEiJ_P0076030 Zkscan5 protein_coding protein_coding MGP_CASTEiJ_T0076031.1 MGP_CASTEiJ_G0029465.1 mouse_genomes_project 5 149039280 149059129 + MGP_CASTEiJ_P0076031 Zkscan5 protein_coding protein_coding MGP_CASTEiJ_T0076032.1 MGP_CASTEiJ_G0029465.1 mouse_genomes_project 5 149039736 149055756 + MGP_CASTEiJ_P0076032 Zkscan5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076033.1 MGP_CASTEiJ_G0029465.1 mouse_genomes_project 5 149043791 149055620 + MGP_CASTEiJ_P0076033 Zkscan5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076034.1 MGP_CASTEiJ_G0029465.1 mouse_genomes_project 5 149043821 149055674 + MGP_CASTEiJ_P0076034 Zkscan5 protein_coding protein_coding MGP_CASTEiJ_T0076035.1 MGP_CASTEiJ_G0029465.1 mouse_genomes_project 5 149044645 149055490 + Zkscan5 protein_coding processed_transcript MGP_CASTEiJ_T0001827.1 MGP_CASTEiJ_G0001748.1 mouse_genomes_project 5 144826755 144827726 - TEC TEC MGP_CASTEiJ_T0014502.1 MGP_CASTEiJ_G0012665.1 mouse_genomes_project 5 62818532 62819257 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072771.1 MGP_CASTEiJ_G0028842.1 mouse_genomes_project 5 91038980 91046923 + Mthfd2l protein_coding processed_transcript MGP_CASTEiJ_T0072772.1 MGP_CASTEiJ_G0028842.1 mouse_genomes_project 5 91039119 91041262 + MGP_CASTEiJ_P0072772 Mthfd2l protein_coding protein_coding MGP_CASTEiJ_T0072773.1 MGP_CASTEiJ_G0028842.1 mouse_genomes_project 5 91039143 91131406 + MGP_CASTEiJ_P0072773 Mthfd2l protein_coding protein_coding MGP_CASTEiJ_T0072774.1 MGP_CASTEiJ_G0028842.1 mouse_genomes_project 5 91055929 91083240 + Mthfd2l protein_coding retained_intron MGP_CASTEiJ_T0070270.1 MGP_CASTEiJ_G0028390.1 mouse_genomes_project 5 2743814 2747696 - MGP_CASTEiJ_P0070270 protein_coding protein_coding MGP_CASTEiJ_T0070271.1 MGP_CASTEiJ_G0028390.1 mouse_genomes_project 5 2743905 2758102 - MGP_CASTEiJ_P0070271 protein_coding unknown_likely_coding MGP_CASTEiJ_T0075318.1 MGP_CASTEiJ_G0029318.1 mouse_genomes_project 5 140031686 140038535 + MGP_CASTEiJ_P0075318 Vgf protein_coding protein_coding MGP_CASTEiJ_T0075319.1 MGP_CASTEiJ_G0029318.1 mouse_genomes_project 5 140035487 140038535 + MGP_CASTEiJ_P0075319 Vgf protein_coding protein_coding MGP_CASTEiJ_T0075320.1 MGP_CASTEiJ_G0029318.1 mouse_genomes_project 5 140035556 140038212 + MGP_CASTEiJ_P0075320 Vgf protein_coding protein_coding MGP_CASTEiJ_T0075321.1 MGP_CASTEiJ_G0029318.1 mouse_genomes_project 5 140035893 140036600 + MGP_CASTEiJ_P0075321 Vgf protein_coding protein_coding MGP_CASTEiJ_T0004641.1 MGP_CASTEiJ_G0004015.1 mouse_genomes_project 5 111277527 111279485 + Gm42596 antisense antisense MGP_CASTEiJ_T0101138.1 MGP_CASTEiJ_G0038051.1 mouse_genomes_project 5 108543744 108543876 + Gm22270 snoRNA snoRNA MGP_CASTEiJ_T0007977.1 MGP_CASTEiJ_G0006517.1 mouse_genomes_project 5 76275091 76289765 - 1700112J05Rik lincRNA lincRNA MGP_CASTEiJ_T0004634.1 MGP_CASTEiJ_G0004009.1 mouse_genomes_project 5 108264014 108267394 - A930041C12Rik antisense antisense MGP_CASTEiJ_T0014465.1 MGP_CASTEiJ_G0012628.1 mouse_genomes_project 5 48860394 48860959 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014446.1 MGP_CASTEiJ_G0012609.1 mouse_genomes_project 5 37044419 37044876 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004650.1 MGP_CASTEiJ_G0004023.1 mouse_genomes_project 5 115940813 115942060 - 4930515G01Rik antisense antisense MGP_CASTEiJ_T0014611.1 MGP_CASTEiJ_G0012774.1 mouse_genomes_project 5 111731365 111732031 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010377.1 MGP_CASTEiJ_G0008565.1 mouse_genomes_project 5 33883395 33883454 + Mir7689 miRNA miRNA MGP_CASTEiJ_T0073304.1 MGP_CASTEiJ_G0028961.1 mouse_genomes_project 5 108713486 108756264 + protein_coding processed_transcript MGP_CASTEiJ_T0073305.1 MGP_CASTEiJ_G0028961.1 mouse_genomes_project 5 108713523 108756559 + MGP_CASTEiJ_P0073305 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073306.1 MGP_CASTEiJ_G0028961.1 mouse_genomes_project 5 108713528 108756725 + protein_coding processed_transcript MGP_CASTEiJ_T0073307.1 MGP_CASTEiJ_G0028961.1 mouse_genomes_project 5 108713528 108757370 + protein_coding processed_transcript MGP_CASTEiJ_T0073308.1 MGP_CASTEiJ_G0028961.1 mouse_genomes_project 5 108713529 108717390 + protein_coding retained_intron MGP_CASTEiJ_T0073309.1 MGP_CASTEiJ_G0028961.1 mouse_genomes_project 5 108713541 108735826 + MGP_CASTEiJ_P0073309 protein_coding protein_coding MGP_CASTEiJ_T0073310.1 MGP_CASTEiJ_G0028961.1 mouse_genomes_project 5 108713554 108756103 + MGP_CASTEiJ_P0073310 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073311.1 MGP_CASTEiJ_G0028961.1 mouse_genomes_project 5 108713554 108757371 + MGP_CASTEiJ_P0073311 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073312.1 MGP_CASTEiJ_G0028961.1 mouse_genomes_project 5 108713554 108758094 + MGP_CASTEiJ_P0073312 protein_coding protein_coding MGP_CASTEiJ_T0073313.1 MGP_CASTEiJ_G0028961.1 mouse_genomes_project 5 108713556 108743512 + MGP_CASTEiJ_P0073313 protein_coding protein_coding MGP_CASTEiJ_T0073314.1 MGP_CASTEiJ_G0028961.1 mouse_genomes_project 5 108713556 108756186 + MGP_CASTEiJ_P0073314 protein_coding protein_coding MGP_CASTEiJ_T0073315.1 MGP_CASTEiJ_G0028961.1 mouse_genomes_project 5 108713569 108735854 + protein_coding processed_transcript MGP_CASTEiJ_T0073316.1 MGP_CASTEiJ_G0028961.1 mouse_genomes_project 5 108720807 108729039 + protein_coding processed_transcript MGP_CASTEiJ_T0073317.1 MGP_CASTEiJ_G0028961.1 mouse_genomes_project 5 108726014 108756571 + protein_coding processed_transcript MGP_CASTEiJ_T0073318.1 MGP_CASTEiJ_G0028961.1 mouse_genomes_project 5 108741449 108753145 + MGP_CASTEiJ_P0073318 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0004724.1 MGP_CASTEiJ_G0004074.1 mouse_genomes_project 5 137973277 137974134 - Gm43500 antisense antisense MGP_CASTEiJ_T0002632.1 MGP_CASTEiJ_G0002522.1 mouse_genomes_project 5 11142308 11142598 - TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0001754.1 MGP_CASTEiJ_G0001677.1 mouse_genomes_project 5 125496427 125497288 + TEC TEC MGP_CASTEiJ_T0001470.1 MGP_CASTEiJ_G0001396.1 mouse_genomes_project 5 41493176 41495917 + TEC TEC MGP_CASTEiJ_T0004668.1 MGP_CASTEiJ_G0004036.1 mouse_genomes_project 5 121203401 121208296 - Tbx3os1 antisense antisense MGP_CASTEiJ_T0004669.1 MGP_CASTEiJ_G0004036.1 mouse_genomes_project 5 121203404 121269905 - Tbx3os1 antisense antisense MGP_CASTEiJ_T0004670.1 MGP_CASTEiJ_G0004036.1 mouse_genomes_project 5 121203496 121204020 - Tbx3os1 antisense antisense MGP_CASTEiJ_T0004671.1 MGP_CASTEiJ_G0004036.1 mouse_genomes_project 5 121251495 121269982 - Tbx3os1 antisense antisense MGP_CASTEiJ_T0004672.1 MGP_CASTEiJ_G0004036.1 mouse_genomes_project 5 121252132 121270193 - Tbx3os1 antisense antisense MGP_CASTEiJ_T0004673.1 MGP_CASTEiJ_G0004036.1 mouse_genomes_project 5 121260581 121318121 - Tbx3os1 antisense antisense MGP_CASTEiJ_T0075220.1 MGP_CASTEiJ_G0029303.1 mouse_genomes_project 5 139019314 139051016 + MGP_CASTEiJ_P0075220 Rasa4 protein_coding protein_coding MGP_CASTEiJ_T0075221.1 MGP_CASTEiJ_G0029303.1 mouse_genomes_project 5 139019352 139051016 + Rasa4 protein_coding retained_intron MGP_CASTEiJ_T0075222.1 MGP_CASTEiJ_G0029303.1 mouse_genomes_project 5 139019396 139049090 + Rasa4 protein_coding retained_intron MGP_CASTEiJ_T0075223.1 MGP_CASTEiJ_G0029303.1 mouse_genomes_project 5 139019396 139051011 + Rasa4 protein_coding retained_intron MGP_CASTEiJ_T0075224.1 MGP_CASTEiJ_G0029303.1 mouse_genomes_project 5 139019397 139031655 + Rasa4 protein_coding retained_intron MGP_CASTEiJ_T0075225.1 MGP_CASTEiJ_G0029303.1 mouse_genomes_project 5 139019416 139051011 + Rasa4 protein_coding retained_intron MGP_CASTEiJ_T0075226.1 MGP_CASTEiJ_G0029303.1 mouse_genomes_project 5 139019430 139051016 + MGP_CASTEiJ_P0075226 Rasa4 protein_coding protein_coding MGP_CASTEiJ_T0075227.1 MGP_CASTEiJ_G0029303.1 mouse_genomes_project 5 139019487 139047239 + Rasa4 protein_coding retained_intron MGP_CASTEiJ_T0075228.1 MGP_CASTEiJ_G0029303.1 mouse_genomes_project 5 139020468 139029475 + Rasa4 protein_coding processed_transcript MGP_CASTEiJ_T0075229.1 MGP_CASTEiJ_G0029303.1 mouse_genomes_project 5 139029309 139030781 + Rasa4 protein_coding retained_intron MGP_CASTEiJ_T0075230.1 MGP_CASTEiJ_G0029303.1 mouse_genomes_project 5 139033749 139041932 + MGP_CASTEiJ_P0075230 Rasa4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075231.1 MGP_CASTEiJ_G0029303.1 mouse_genomes_project 5 139043565 139045756 + MGP_CASTEiJ_P0075231 Rasa4 protein_coding protein_coding MGP_CASTEiJ_T0075232.1 MGP_CASTEiJ_G0029303.1 mouse_genomes_project 5 139050093 139050697 + Rasa4 protein_coding retained_intron MGP_CASTEiJ_T0001686.1 MGP_CASTEiJ_G0001609.1 mouse_genomes_project 5 107762927 107765012 - TEC TEC MGP_CASTEiJ_T0001468.1 MGP_CASTEiJ_G0001394.1 mouse_genomes_project 5 41282120 41284224 + TEC TEC MGP_CASTEiJ_T0071400.1 MGP_CASTEiJ_G0028578.1 mouse_genomes_project 5 32150768 32254082 + MGP_CASTEiJ_P0071400 Grk4 protein_coding protein_coding MGP_CASTEiJ_T0071401.1 MGP_CASTEiJ_G0028578.1 mouse_genomes_project 5 32151370 32164082 + MGP_CASTEiJ_P0071401 Grk4 protein_coding protein_coding MGP_CASTEiJ_T0071402.1 MGP_CASTEiJ_G0028578.1 mouse_genomes_project 5 32208495 32242292 + Grk4 protein_coding processed_transcript MGP_CASTEiJ_T0071403.1 MGP_CASTEiJ_G0028578.1 mouse_genomes_project 5 32241398 32254084 + Grk4 protein_coding processed_transcript MGP_CASTEiJ_T0073495.1 MGP_CASTEiJ_G0028996.1 mouse_genomes_project 5 111516281 111622364 - MGP_CASTEiJ_P0073495 Ep400 protein_coding protein_coding MGP_CASTEiJ_T0073496.1 MGP_CASTEiJ_G0028996.1 mouse_genomes_project 5 111516281 111622554 - MGP_CASTEiJ_P0073496 Ep400 protein_coding protein_coding MGP_CASTEiJ_T0073497.1 MGP_CASTEiJ_G0028996.1 mouse_genomes_project 5 111516286 111622554 - MGP_CASTEiJ_P0073497 Ep400 protein_coding protein_coding MGP_CASTEiJ_T0073498.1 MGP_CASTEiJ_G0028996.1 mouse_genomes_project 5 111519251 111520069 - Ep400 protein_coding processed_transcript MGP_CASTEiJ_T0073499.1 MGP_CASTEiJ_G0028996.1 mouse_genomes_project 5 111519415 111520688 - Ep400 protein_coding retained_intron MGP_CASTEiJ_T0073500.1 MGP_CASTEiJ_G0028996.1 mouse_genomes_project 5 111539812 111544123 - Ep400 protein_coding retained_intron MGP_CASTEiJ_T0073501.1 MGP_CASTEiJ_G0028996.1 mouse_genomes_project 5 111548166 111551338 - Ep400 protein_coding retained_intron MGP_CASTEiJ_T0073502.1 MGP_CASTEiJ_G0028996.1 mouse_genomes_project 5 111549545 111560150 - MGP_CASTEiJ_P0073502 Ep400 protein_coding protein_coding MGP_CASTEiJ_T0073503.1 MGP_CASTEiJ_G0028996.1 mouse_genomes_project 5 111591675 111622422 - MGP_CASTEiJ_P0073503 Ep400 protein_coding protein_coding MGP_CASTEiJ_T0073504.1 MGP_CASTEiJ_G0028996.1 mouse_genomes_project 5 111592073 111621992 - MGP_CASTEiJ_P0073504 Ep400 protein_coding protein_coding MGP_CASTEiJ_T0073505.1 MGP_CASTEiJ_G0028996.1 mouse_genomes_project 5 111610320 111622554 - Ep400 protein_coding processed_transcript MGP_CASTEiJ_T0014474.1 MGP_CASTEiJ_G0012637.1 mouse_genomes_project 5 53929103 53929908 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014513.1 MGP_CASTEiJ_G0012676.1 mouse_genomes_project 5 71088907 71089380 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070582.1 MGP_CASTEiJ_G0028444.1 mouse_genomes_project 5 21211433 21276707 + MGP_CASTEiJ_P0070582 Klhl7 protein_coding protein_coding MGP_CASTEiJ_T0070583.1 MGP_CASTEiJ_G0028444.1 mouse_genomes_project 5 21211512 21274114 + MGP_CASTEiJ_P0070583 Klhl7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070584.1 MGP_CASTEiJ_G0028444.1 mouse_genomes_project 5 21211554 21248627 + Klhl7 protein_coding retained_intron MGP_CASTEiJ_T0008073.1 MGP_CASTEiJ_G0006588.1 mouse_genomes_project 5 111631385 111632629 + Gm26515 lincRNA lincRNA MGP_CASTEiJ_T0075147.1 MGP_CASTEiJ_G0029287.1 mouse_genomes_project 5 138435288 138438165 - MGP_CASTEiJ_P0075147 Ccl26 protein_coding protein_coding MGP_CASTEiJ_T0075213.1 MGP_CASTEiJ_G0029301.1 mouse_genomes_project 5 138961354 138969283 + MGP_CASTEiJ_P0075213 Upk3b protein_coding protein_coding MGP_CASTEiJ_T0014455.1 MGP_CASTEiJ_G0012618.1 mouse_genomes_project 5 42099319 42101216 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017470.1 MGP_CASTEiJ_G0014937.1 mouse_genomes_project 5 154356324 154365388 + Gm43451 processed_transcript lincRNA MGP_CASTEiJ_T0017471.1 MGP_CASTEiJ_G0014937.1 mouse_genomes_project 5 154364763 154365633 + Gm43451 processed_transcript retained_intron MGP_CASTEiJ_T0070766.1 MGP_CASTEiJ_G0028482.1 mouse_genomes_project 5 26385515 26392677 + MGP_CASTEiJ_P0070766 Rnf32 protein_coding protein_coding MGP_CASTEiJ_T0070767.1 MGP_CASTEiJ_G0028482.1 mouse_genomes_project 5 26385516 26416798 + MGP_CASTEiJ_P0070767 Rnf32 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070768.1 MGP_CASTEiJ_G0028482.1 mouse_genomes_project 5 26385518 26388284 + MGP_CASTEiJ_P0070768 Rnf32 protein_coding protein_coding MGP_CASTEiJ_T0070769.1 MGP_CASTEiJ_G0028482.1 mouse_genomes_project 5 26385520 26416839 + MGP_CASTEiJ_P0070769 Rnf32 protein_coding protein_coding MGP_CASTEiJ_T0070770.1 MGP_CASTEiJ_G0028482.1 mouse_genomes_project 5 26385526 26392737 + MGP_CASTEiJ_P0070770 Rnf32 protein_coding protein_coding MGP_CASTEiJ_T0070771.1 MGP_CASTEiJ_G0028482.1 mouse_genomes_project 5 26385529 26416841 + MGP_CASTEiJ_P0070771 Rnf32 protein_coding protein_coding MGP_CASTEiJ_T0070772.1 MGP_CASTEiJ_G0028482.1 mouse_genomes_project 5 26385581 26397222 + Rnf32 protein_coding retained_intron MGP_CASTEiJ_T0070773.1 MGP_CASTEiJ_G0028482.1 mouse_genomes_project 5 26385607 26387528 + Rnf32 protein_coding processed_transcript MGP_CASTEiJ_T0070774.1 MGP_CASTEiJ_G0028482.1 mouse_genomes_project 5 26386109 26392626 + MGP_CASTEiJ_P0070774 Rnf32 protein_coding protein_coding MGP_CASTEiJ_T0070775.1 MGP_CASTEiJ_G0028482.1 mouse_genomes_project 5 26387542 26416608 + MGP_CASTEiJ_P0070775 Rnf32 protein_coding protein_coding MGP_CASTEiJ_T0070776.1 MGP_CASTEiJ_G0028482.1 mouse_genomes_project 5 26388207 26416618 + MGP_CASTEiJ_P0070776 Rnf32 protein_coding protein_coding MGP_CASTEiJ_T0070777.1 MGP_CASTEiJ_G0028482.1 mouse_genomes_project 5 26415107 26419775 + Rnf32 protein_coding retained_intron MGP_CASTEiJ_T0072901.1 MGP_CASTEiJ_G0028868.1 mouse_genomes_project 5 93405897 93432910 - MGP_CASTEiJ_P0072901 Ccni protein_coding protein_coding MGP_CASTEiJ_T0072902.1 MGP_CASTEiJ_G0028868.1 mouse_genomes_project 5 93408794 93415148 - MGP_CASTEiJ_P0072902 Ccni protein_coding protein_coding MGP_CASTEiJ_T0072903.1 MGP_CASTEiJ_G0028868.1 mouse_genomes_project 5 93412934 93413702 - Ccni protein_coding retained_intron MGP_CASTEiJ_T0072904.1 MGP_CASTEiJ_G0028868.1 mouse_genomes_project 5 93413243 93428896 - MGP_CASTEiJ_P0072904 Ccni protein_coding protein_coding MGP_CASTEiJ_T0072905.1 MGP_CASTEiJ_G0028868.1 mouse_genomes_project 5 93415046 93432843 - MGP_CASTEiJ_P0072905 Ccni protein_coding protein_coding MGP_CASTEiJ_T0001580.1 MGP_CASTEiJ_G0001504.1 mouse_genomes_project 5 64348392 64350518 - TEC TEC MGP_CASTEiJ_T0007896.1 MGP_CASTEiJ_G0006454.1 mouse_genomes_project 5 34813786 34825168 + lincRNA lincRNA MGP_CASTEiJ_T0007897.1 MGP_CASTEiJ_G0006454.1 mouse_genomes_project 5 34816751 34823875 + lincRNA lincRNA MGP_CASTEiJ_T0014504.1 MGP_CASTEiJ_G0012667.1 mouse_genomes_project 5 64949286 64952767 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014647.1 MGP_CASTEiJ_G0012810.1 mouse_genomes_project 5 139149721 139150496 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073134.1 MGP_CASTEiJ_G0028917.1 mouse_genomes_project 5 104135656 104148501 + MGP_CASTEiJ_P0073134 Nudt9 protein_coding protein_coding MGP_CASTEiJ_T0073135.1 MGP_CASTEiJ_G0028917.1 mouse_genomes_project 5 104135876 104150061 + MGP_CASTEiJ_P0073135 Nudt9 protein_coding protein_coding MGP_CASTEiJ_T0073136.1 MGP_CASTEiJ_G0028917.1 mouse_genomes_project 5 104136219 104155572 + MGP_CASTEiJ_P0073136 Nudt9 protein_coding protein_coding MGP_CASTEiJ_T0073137.1 MGP_CASTEiJ_G0028917.1 mouse_genomes_project 5 104136318 104148735 + Nudt9 protein_coding retained_intron MGP_CASTEiJ_T0073138.1 MGP_CASTEiJ_G0028917.1 mouse_genomes_project 5 104136504 104148481 + MGP_CASTEiJ_P0073138 Nudt9 protein_coding protein_coding MGP_CASTEiJ_T0073139.1 MGP_CASTEiJ_G0028917.1 mouse_genomes_project 5 104136971 104145848 + MGP_CASTEiJ_P0073139 Nudt9 protein_coding protein_coding MGP_CASTEiJ_T0008253.1 MGP_CASTEiJ_G0006710.1 mouse_genomes_project 5 153621247 153635111 - Gm29264 lincRNA lincRNA MGP_CASTEiJ_T0099878.1 MGP_CASTEiJ_G0036791.1 mouse_genomes_project 5 50365979 50366084 - Gm25601 snRNA snRNA MGP_CASTEiJ_T0075845.1 MGP_CASTEiJ_G0029425.1 mouse_genomes_project 5 146868120 146899790 + MGP_CASTEiJ_P0075845 protein_coding protein_coding MGP_CASTEiJ_T0014612.1 MGP_CASTEiJ_G0012775.1 mouse_genomes_project 5 111760465 111760963 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014432.1 MGP_CASTEiJ_G0012595.1 mouse_genomes_project 5 30561627 30562088 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099904.1 MGP_CASTEiJ_G0036817.1 mouse_genomes_project 5 103720394 103720565 + Gm25721 snRNA snRNA MGP_CASTEiJ_T0010409.1 MGP_CASTEiJ_G0008597.1 mouse_genomes_project 5 116936548 116936608 + Mir7030 miRNA miRNA MGP_CASTEiJ_T0102343.1 MGP_CASTEiJ_G0039068.1 mouse_genomes_project 5 67391882 67417324 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008166.1 MGP_CASTEiJ_G0006648.1 mouse_genomes_project 5 128196764 128221678 + Gm42952 lincRNA lincRNA MGP_CASTEiJ_T0008167.1 MGP_CASTEiJ_G0006648.1 mouse_genomes_project 5 128200448 128221879 + Gm42952 lincRNA lincRNA MGP_CASTEiJ_T0008168.1 MGP_CASTEiJ_G0006648.1 mouse_genomes_project 5 128200460 128215048 + Gm42952 lincRNA lincRNA MGP_CASTEiJ_T0008169.1 MGP_CASTEiJ_G0006648.1 mouse_genomes_project 5 128200465 128213765 + Gm42952 lincRNA lincRNA MGP_CASTEiJ_T0008170.1 MGP_CASTEiJ_G0006648.1 mouse_genomes_project 5 128200470 128221822 + Gm42952 lincRNA lincRNA MGP_CASTEiJ_T0008171.1 MGP_CASTEiJ_G0006648.1 mouse_genomes_project 5 128200484 128214684 + Gm42952 lincRNA lincRNA MGP_CASTEiJ_T0075126.1 MGP_CASTEiJ_G0029283.1 mouse_genomes_project 5 138217036 138230913 + MGP_CASTEiJ_P0075126 Trim50 protein_coding protein_coding MGP_CASTEiJ_T0075127.1 MGP_CASTEiJ_G0029283.1 mouse_genomes_project 5 138217037 138231265 + MGP_CASTEiJ_P0075127 Trim50 protein_coding protein_coding MGP_CASTEiJ_T0072243.1 MGP_CASTEiJ_G0028720.1 mouse_genomes_project 5 71448815 71491843 - MGP_CASTEiJ_P0072243 Nfxl1 protein_coding protein_coding MGP_CASTEiJ_T0072244.1 MGP_CASTEiJ_G0028720.1 mouse_genomes_project 5 71448818 71491804 - MGP_CASTEiJ_P0072244 Nfxl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072245.1 MGP_CASTEiJ_G0028720.1 mouse_genomes_project 5 71449028 71451927 - Nfxl1 protein_coding retained_intron MGP_CASTEiJ_T0072246.1 MGP_CASTEiJ_G0028720.1 mouse_genomes_project 5 71451473 71458161 - Nfxl1 protein_coding retained_intron MGP_CASTEiJ_T0072247.1 MGP_CASTEiJ_G0028720.1 mouse_genomes_project 5 71457702 71460586 - Nfxl1 protein_coding retained_intron MGP_CASTEiJ_T0072248.1 MGP_CASTEiJ_G0028720.1 mouse_genomes_project 5 71478545 71491760 - MGP_CASTEiJ_P0072248 Nfxl1 protein_coding protein_coding MGP_CASTEiJ_T0072249.1 MGP_CASTEiJ_G0028720.1 mouse_genomes_project 5 71482278 71491577 - Nfxl1 protein_coding retained_intron MGP_CASTEiJ_T0072250.1 MGP_CASTEiJ_G0028720.1 mouse_genomes_project 5 71482280 71491807 - Nfxl1 protein_coding retained_intron MGP_CASTEiJ_T0072251.1 MGP_CASTEiJ_G0028720.1 mouse_genomes_project 5 71487642 71491782 - Nfxl1 protein_coding retained_intron MGP_CASTEiJ_T0008200.1 MGP_CASTEiJ_G0006666.1 mouse_genomes_project 5 136263632 136320214 - Gm42624 lincRNA lincRNA MGP_CASTEiJ_T0070672.1 MGP_CASTEiJ_G0028461.1 mouse_genomes_project 5 21735188 21748588 - Smarcd3 protein_coding retained_intron MGP_CASTEiJ_T0070673.1 MGP_CASTEiJ_G0028461.1 mouse_genomes_project 5 21736986 21748629 - MGP_CASTEiJ_P0070673 Smarcd3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070674.1 MGP_CASTEiJ_G0028461.1 mouse_genomes_project 5 21736992 21770391 - MGP_CASTEiJ_P0070674 Smarcd3 protein_coding protein_coding MGP_CASTEiJ_T0070675.1 MGP_CASTEiJ_G0028461.1 mouse_genomes_project 5 21736992 21748624 - MGP_CASTEiJ_P0070675 Smarcd3 protein_coding protein_coding MGP_CASTEiJ_T0070677.1 MGP_CASTEiJ_G0028461.1 mouse_genomes_project 5 21739065 21741220 - Smarcd3 protein_coding retained_intron MGP_CASTEiJ_T0070678.1 MGP_CASTEiJ_G0028461.1 mouse_genomes_project 5 21739534 21748547 - Smarcd3 protein_coding retained_intron MGP_CASTEiJ_T0070679.1 MGP_CASTEiJ_G0028461.1 mouse_genomes_project 5 21740105 21743311 - Smarcd3 protein_coding retained_intron MGP_CASTEiJ_T0070680.1 MGP_CASTEiJ_G0028461.1 mouse_genomes_project 5 21740116 21741360 - Smarcd3 protein_coding retained_intron MGP_CASTEiJ_T0070681.1 MGP_CASTEiJ_G0028461.1 mouse_genomes_project 5 21740237 21748512 - Smarcd3 protein_coding retained_intron MGP_CASTEiJ_T0070682.1 MGP_CASTEiJ_G0028461.1 mouse_genomes_project 5 21768505 21769116 - Smarcd3 protein_coding processed_transcript MGP_CASTEiJ_T0070594.1 MGP_CASTEiJ_G0028447.1 mouse_genomes_project 5 21482288 21503534 + MGP_CASTEiJ_P0070594 Nos3 protein_coding protein_coding MGP_CASTEiJ_T0070595.1 MGP_CASTEiJ_G0028447.1 mouse_genomes_project 5 21482288 21503386 + MGP_CASTEiJ_P0070595 Nos3 protein_coding protein_coding MGP_CASTEiJ_T0014391.1 MGP_CASTEiJ_G0012554.1 mouse_genomes_project 5 20025043 20025653 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075491.1 MGP_CASTEiJ_G0029352.1 mouse_genomes_project 5 141026809 141040151 - MGP_CASTEiJ_P0075491 protein_coding protein_coding MGP_CASTEiJ_T0075492.1 MGP_CASTEiJ_G0029352.1 mouse_genomes_project 5 141039565 141040148 - protein_coding retained_intron MGP_CASTEiJ_T0074028.1 MGP_CASTEiJ_G0029096.1 mouse_genomes_project 5 119520960 119560151 + MGP_CASTEiJ_P0074028 Tesc protein_coding protein_coding MGP_CASTEiJ_T0074029.1 MGP_CASTEiJ_G0029096.1 mouse_genomes_project 5 119520982 119560118 + MGP_CASTEiJ_P0074029 Tesc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074030.1 MGP_CASTEiJ_G0029096.1 mouse_genomes_project 5 119521087 119560143 + Tesc protein_coding retained_intron MGP_CASTEiJ_T0074031.1 MGP_CASTEiJ_G0029096.1 mouse_genomes_project 5 119530840 119560046 + Tesc protein_coding processed_transcript MGP_CASTEiJ_T0074032.1 MGP_CASTEiJ_G0029096.1 mouse_genomes_project 5 119535767 119551957 + Tesc protein_coding processed_transcript MGP_CASTEiJ_T0074033.1 MGP_CASTEiJ_G0029096.1 mouse_genomes_project 5 119535768 119542811 + Tesc protein_coding processed_transcript MGP_CASTEiJ_T0011266.1 MGP_CASTEiJ_G0009454.1 mouse_genomes_project 5 89761536 89761860 + Gm25320 misc_RNA misc_RNA MGP_CASTEiJ_T0102338.1 MGP_CASTEiJ_G0039063.1 mouse_genomes_project 5 272959 273127 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0071948.1 MGP_CASTEiJ_G0028672.1 mouse_genomes_project 5 62452621 62519123 - MGP_CASTEiJ_P0071948 Rell1 protein_coding protein_coding MGP_CASTEiJ_T0071949.1 MGP_CASTEiJ_G0028672.1 mouse_genomes_project 5 62452789 62519049 - MGP_CASTEiJ_P0071949 Rell1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071950.1 MGP_CASTEiJ_G0028672.1 mouse_genomes_project 5 62464193 62518994 - MGP_CASTEiJ_P0071950 Rell1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071951.1 MGP_CASTEiJ_G0028672.1 mouse_genomes_project 5 62469604 62477144 - Rell1 protein_coding processed_transcript MGP_CASTEiJ_T0071952.1 MGP_CASTEiJ_G0028672.1 mouse_genomes_project 5 62473559 62477006 - Rell1 protein_coding retained_intron MGP_CASTEiJ_T0004579.1 MGP_CASTEiJ_G0003971.1 mouse_genomes_project 5 66708000 66774952 + Gm15477 antisense antisense MGP_CASTEiJ_T0004580.1 MGP_CASTEiJ_G0003971.1 mouse_genomes_project 5 66708086 66770643 + Gm15477 antisense antisense MGP_CASTEiJ_T0075888.1 MGP_CASTEiJ_G0029437.1 mouse_genomes_project 5 147368398 147463328 + MGP_CASTEiJ_P0075888 Cyth3 protein_coding protein_coding MGP_CASTEiJ_T0075889.1 MGP_CASTEiJ_G0029437.1 mouse_genomes_project 5 147368452 147373376 + Cyth3 protein_coding retained_intron MGP_CASTEiJ_T0075890.1 MGP_CASTEiJ_G0029437.1 mouse_genomes_project 5 147380204 147445772 + MGP_CASTEiJ_P0075890 Cyth3 protein_coding protein_coding MGP_CASTEiJ_T0075891.1 MGP_CASTEiJ_G0029437.1 mouse_genomes_project 5 147382478 147445674 + MGP_CASTEiJ_P0075891 Cyth3 protein_coding protein_coding MGP_CASTEiJ_T0075892.1 MGP_CASTEiJ_G0029437.1 mouse_genomes_project 5 147414098 147463678 + MGP_CASTEiJ_P0075892 Cyth3 protein_coding protein_coding MGP_CASTEiJ_T0010403.1 MGP_CASTEiJ_G0008591.1 mouse_genomes_project 5 111873004 111873113 + Mir701 miRNA miRNA MGP_CASTEiJ_T0001761.1 MGP_CASTEiJ_G0001684.1 mouse_genomes_project 5 126585902 126587959 + TEC TEC MGP_CASTEiJ_T0001762.1 MGP_CASTEiJ_G0001684.1 mouse_genomes_project 5 126586911 126588088 + TEC TEC MGP_CASTEiJ_T0001704.1 MGP_CASTEiJ_G0001627.1 mouse_genomes_project 5 114157950 114158333 + TEC TEC MGP_CASTEiJ_T0001394.1 MGP_CASTEiJ_G0001323.1 mouse_genomes_project 5 9556641 9560230 + TEC TEC MGP_CASTEiJ_T0076103.1 MGP_CASTEiJ_G0029485.1 mouse_genomes_project 5 151491886 151498358 - MGP_CASTEiJ_P0076103 Cdx2 protein_coding protein_coding MGP_CASTEiJ_T0072229.1 MGP_CASTEiJ_G0028718.1 mouse_genomes_project 5 71072300 71083972 - MGP_CASTEiJ_P0072229 Commd8 protein_coding protein_coding MGP_CASTEiJ_T0072230.1 MGP_CASTEiJ_G0028718.1 mouse_genomes_project 5 71072893 71083947 - MGP_CASTEiJ_P0072230 Commd8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072231.1 MGP_CASTEiJ_G0028718.1 mouse_genomes_project 5 71074564 71076725 - Commd8 protein_coding retained_intron MGP_CASTEiJ_T0072232.1 MGP_CASTEiJ_G0028718.1 mouse_genomes_project 5 71075421 71083951 - MGP_CASTEiJ_P0072232 Commd8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0072233.1 MGP_CASTEiJ_G0028718.1 mouse_genomes_project 5 71075424 71081309 - Commd8 protein_coding processed_transcript MGP_CASTEiJ_T0072234.1 MGP_CASTEiJ_G0028718.1 mouse_genomes_project 5 71076548 71083939 - MGP_CASTEiJ_P0072234 Commd8 protein_coding protein_coding MGP_CASTEiJ_T0001619.1 MGP_CASTEiJ_G0001543.1 mouse_genomes_project 5 71486442 71487420 - TEC TEC MGP_CASTEiJ_T0074779.1 MGP_CASTEiJ_G0029225.1 mouse_genomes_project 5 131422186 131446469 - MGP_CASTEiJ_P0074779 Stx2 protein_coding protein_coding MGP_CASTEiJ_T0074780.1 MGP_CASTEiJ_G0029225.1 mouse_genomes_project 5 131422192 131446430 - MGP_CASTEiJ_P0074780 Stx2 protein_coding protein_coding MGP_CASTEiJ_T0074781.1 MGP_CASTEiJ_G0029225.1 mouse_genomes_project 5 131423908 131426913 - Stx2 protein_coding retained_intron MGP_CASTEiJ_T0074782.1 MGP_CASTEiJ_G0029225.1 mouse_genomes_project 5 131426419 131427606 - Stx2 protein_coding retained_intron MGP_CASTEiJ_T0074783.1 MGP_CASTEiJ_G0029225.1 mouse_genomes_project 5 131426662 131446318 - Stx2 protein_coding processed_transcript MGP_CASTEiJ_T0074784.1 MGP_CASTEiJ_G0029225.1 mouse_genomes_project 5 131428399 131446444 - Stx2 protein_coding retained_intron MGP_CASTEiJ_T0074785.1 MGP_CASTEiJ_G0029225.1 mouse_genomes_project 5 131431283 131446339 - MGP_CASTEiJ_P0074785 Stx2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074786.1 MGP_CASTEiJ_G0029225.1 mouse_genomes_project 5 131431297 131437467 - MGP_CASTEiJ_P0074786 Stx2 protein_coding protein_coding MGP_CASTEiJ_T0074787.1 MGP_CASTEiJ_G0029225.1 mouse_genomes_project 5 131436919 131446441 - Stx2 protein_coding retained_intron MGP_CASTEiJ_T0004628.1 MGP_CASTEiJ_G0004005.1 mouse_genomes_project 5 104200287 104207085 + Gm26703 antisense antisense MGP_CASTEiJ_T0004629.1 MGP_CASTEiJ_G0004005.1 mouse_genomes_project 5 104200361 104201997 + Gm26703 antisense antisense MGP_CASTEiJ_T0004630.1 MGP_CASTEiJ_G0004005.1 mouse_genomes_project 5 104204932 104211912 + Gm26703 antisense antisense MGP_CASTEiJ_T0014575.1 MGP_CASTEiJ_G0012738.1 mouse_genomes_project 5 101279931 101280223 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011279.1 MGP_CASTEiJ_G0009467.1 mouse_genomes_project 5 113176574 113176709 - Gm27357 misc_RNA misc_RNA MGP_CASTEiJ_T0075663.1 MGP_CASTEiJ_G0029384.1 mouse_genomes_project 5 142709895 142818691 - MGP_CASTEiJ_P0075663 3110082I17Rik protein_coding protein_coding MGP_CASTEiJ_T0075664.1 MGP_CASTEiJ_G0029384.1 mouse_genomes_project 5 142709895 142818716 - MGP_CASTEiJ_P0075664 3110082I17Rik protein_coding protein_coding MGP_CASTEiJ_T0075665.1 MGP_CASTEiJ_G0029384.1 mouse_genomes_project 5 142715217 142818700 - 3110082I17Rik protein_coding retained_intron MGP_CASTEiJ_T0075675.1 MGP_CASTEiJ_G0029384.1 mouse_genomes_project 5 142773425 142813694 - 3110082I17Rik protein_coding processed_transcript MGP_CASTEiJ_T0004525.1 MGP_CASTEiJ_G0003927.1 mouse_genomes_project 5 28412259 28413828 - Gm15469 antisense antisense MGP_CASTEiJ_T0074015.1 MGP_CASTEiJ_G0029094.1 mouse_genomes_project 5 119255958 119350181 + MGP_CASTEiJ_P0074015 Nos1 protein_coding protein_coding MGP_CASTEiJ_T0074016.1 MGP_CASTEiJ_G0029094.1 mouse_genomes_project 5 119255981 119349811 + Nos1 protein_coding processed_transcript MGP_CASTEiJ_T0074017.1 MGP_CASTEiJ_G0029094.1 mouse_genomes_project 5 119321709 119449016 + MGP_CASTEiJ_P0074017 Nos1 protein_coding protein_coding MGP_CASTEiJ_T0074018.1 MGP_CASTEiJ_G0029094.1 mouse_genomes_project 5 119322045 119444540 + MGP_CASTEiJ_P0074018 Nos1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074019.1 MGP_CASTEiJ_G0029094.1 mouse_genomes_project 5 119349838 119444087 + MGP_CASTEiJ_P0074019 Nos1 protein_coding protein_coding MGP_CASTEiJ_T0074020.1 MGP_CASTEiJ_G0029094.1 mouse_genomes_project 5 119349843 119443991 + MGP_CASTEiJ_P0074020 Nos1 protein_coding protein_coding MGP_CASTEiJ_T0074021.1 MGP_CASTEiJ_G0029094.1 mouse_genomes_project 5 119405856 119412480 + Nos1 protein_coding processed_transcript MGP_CASTEiJ_T0101605.1 MGP_CASTEiJ_G0038466.1 mouse_genomes_project 5 20025043 20025608 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0010423.1 MGP_CASTEiJ_G0008611.1 mouse_genomes_project 5 138625154 138625238 - Mir7034 miRNA miRNA MGP_CASTEiJ_T0075182.1 MGP_CASTEiJ_G0029295.1 mouse_genomes_project 5 138705636 138746597 + Srrm3 protein_coding retained_intron MGP_CASTEiJ_T0075183.1 MGP_CASTEiJ_G0029295.1 mouse_genomes_project 5 138705643 138756883 + MGP_CASTEiJ_P0075183 Srrm3 protein_coding protein_coding MGP_CASTEiJ_T0075184.1 MGP_CASTEiJ_G0029295.1 mouse_genomes_project 5 138716537 138783085 + MGP_CASTEiJ_P0075184 Srrm3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075185.1 MGP_CASTEiJ_G0029295.1 mouse_genomes_project 5 138716537 138784747 + MGP_CASTEiJ_P0075185 Srrm3 protein_coding protein_coding MGP_CASTEiJ_T0075186.1 MGP_CASTEiJ_G0029295.1 mouse_genomes_project 5 138759152 138764586 + Srrm3 protein_coding retained_intron MGP_CASTEiJ_T0075187.1 MGP_CASTEiJ_G0029295.1 mouse_genomes_project 5 138775005 138776593 + Srrm3 protein_coding retained_intron MGP_CASTEiJ_T0072673.1 MGP_CASTEiJ_G0028811.1 mouse_genomes_project 5 88307232 88328895 + MGP_CASTEiJ_P0072673 Gm7714 protein_coding protein_coding MGP_CASTEiJ_T0008180.1 MGP_CASTEiJ_G0006654.1 mouse_genomes_project 5 129406652 129407440 + Gm43475 lincRNA lincRNA MGP_CASTEiJ_T0072078.1 MGP_CASTEiJ_G0028694.1 mouse_genomes_project 5 64700108 64714459 - 9130230L23Rik protein_coding retained_intron MGP_CASTEiJ_T0072079.1 MGP_CASTEiJ_G0028694.1 mouse_genomes_project 5 64710904 64731249 - MGP_CASTEiJ_P0072079 9130230L23Rik protein_coding protein_coding MGP_CASTEiJ_T0072080.1 MGP_CASTEiJ_G0028694.1 mouse_genomes_project 5 64711253 64727227 - MGP_CASTEiJ_P0072080 9130230L23Rik protein_coding protein_coding MGP_CASTEiJ_T0072081.1 MGP_CASTEiJ_G0028694.1 mouse_genomes_project 5 64713369 64715562 - 9130230L23Rik protein_coding retained_intron MGP_CASTEiJ_T0072082.1 MGP_CASTEiJ_G0028694.1 mouse_genomes_project 5 64714577 64728343 - 9130230L23Rik protein_coding retained_intron MGP_CASTEiJ_T0072083.1 MGP_CASTEiJ_G0028694.1 mouse_genomes_project 5 64726685 64731249 - 9130230L23Rik protein_coding retained_intron MGP_CASTEiJ_T0072084.1 MGP_CASTEiJ_G0028694.1 mouse_genomes_project 5 64728072 64728794 - 9130230L23Rik protein_coding retained_intron MGP_CASTEiJ_T0010381.1 MGP_CASTEiJ_G0008569.1 mouse_genomes_project 5 50141546 50141662 - Mir6417 miRNA miRNA MGP_CASTEiJ_T0072612.1 MGP_CASTEiJ_G0028795.1 mouse_genomes_project 5 87425369 87451786 - MGP_CASTEiJ_P0072612 Sult1b1 protein_coding protein_coding MGP_CASTEiJ_T0072613.1 MGP_CASTEiJ_G0028795.1 mouse_genomes_project 5 87425395 87449837 - MGP_CASTEiJ_P0072613 Sult1b1 protein_coding protein_coding MGP_CASTEiJ_T0072614.1 MGP_CASTEiJ_G0028795.1 mouse_genomes_project 5 87427798 87448763 - MGP_CASTEiJ_P0072614 Sult1b1 protein_coding protein_coding MGP_CASTEiJ_T0004705.1 MGP_CASTEiJ_G0004060.1 mouse_genomes_project 5 127251475 127254996 + Gm42839 antisense antisense MGP_CASTEiJ_T0074588.1 MGP_CASTEiJ_G0029191.1 mouse_genomes_project 5 126259452 126296453 - MGP_CASTEiJ_P0074588 Pitpnm2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0074594.1 MGP_CASTEiJ_G0029191.1 mouse_genomes_project 5 126262602 126366543 - MGP_CASTEiJ_P0074594 Pitpnm2 protein_coding protein_coding MGP_CASTEiJ_T0074595.1 MGP_CASTEiJ_G0029191.1 mouse_genomes_project 5 126262602 126401290 - MGP_CASTEiJ_P0074595 Pitpnm2 protein_coding protein_coding MGP_CASTEiJ_T0074596.1 MGP_CASTEiJ_G0029191.1 mouse_genomes_project 5 126262603 126399520 - MGP_CASTEiJ_P0074596 Pitpnm2 protein_coding protein_coding MGP_CASTEiJ_T0074597.1 MGP_CASTEiJ_G0029191.1 mouse_genomes_project 5 126263661 126333069 - MGP_CASTEiJ_P0074597 Pitpnm2 protein_coding protein_coding MGP_CASTEiJ_T0074598.1 MGP_CASTEiJ_G0029191.1 mouse_genomes_project 5 126264210 126268445 - Pitpnm2 protein_coding retained_intron MGP_CASTEiJ_T0074599.1 MGP_CASTEiJ_G0029191.1 mouse_genomes_project 5 126264995 126266021 - Pitpnm2 protein_coding retained_intron MGP_CASTEiJ_T0074600.1 MGP_CASTEiJ_G0029191.1 mouse_genomes_project 5 126269107 126270521 - Pitpnm2 protein_coding retained_intron MGP_CASTEiJ_T0074601.1 MGP_CASTEiJ_G0029191.1 mouse_genomes_project 5 126276683 126335634 - MGP_CASTEiJ_P0074601 Pitpnm2 protein_coding protein_coding MGP_CASTEiJ_T0074602.1 MGP_CASTEiJ_G0029191.1 mouse_genomes_project 5 126276856 126284129 - Pitpnm2 protein_coding retained_intron MGP_CASTEiJ_T0074603.1 MGP_CASTEiJ_G0029191.1 mouse_genomes_project 5 126287484 126331005 - MGP_CASTEiJ_P0074603 Pitpnm2 protein_coding protein_coding MGP_CASTEiJ_T0071294.1 MGP_CASTEiJ_G0028563.1 mouse_genomes_project 5 31375864 31406875 - MGP_CASTEiJ_P0071294 Nelfa protein_coding protein_coding MGP_CASTEiJ_T0071295.1 MGP_CASTEiJ_G0028563.1 mouse_genomes_project 5 31388669 31406712 - Nelfa protein_coding retained_intron MGP_CASTEiJ_T0074103.1 MGP_CASTEiJ_G0029113.1 mouse_genomes_project 5 122357413 122374910 + MGP_CASTEiJ_P0074103 Ddx54 protein_coding protein_coding MGP_CASTEiJ_T0074104.1 MGP_CASTEiJ_G0029113.1 mouse_genomes_project 5 122357801 122373955 + Ddx54 protein_coding retained_intron MGP_CASTEiJ_T0074105.1 MGP_CASTEiJ_G0029113.1 mouse_genomes_project 5 122365234 122368128 + Ddx54 protein_coding retained_intron MGP_CASTEiJ_T0074106.1 MGP_CASTEiJ_G0029113.1 mouse_genomes_project 5 122367656 122368127 + Ddx54 protein_coding retained_intron MGP_CASTEiJ_T0001643.1 MGP_CASTEiJ_G0001566.1 mouse_genomes_project 5 75904634 75907036 - TEC TEC MGP_CASTEiJ_T0007846.1 MGP_CASTEiJ_G0006424.1 mouse_genomes_project 5 12638675 12659882 - 4930519H02Rik lincRNA lincRNA MGP_CASTEiJ_T0007847.1 MGP_CASTEiJ_G0006424.1 mouse_genomes_project 5 12643371 12659945 - 4930519H02Rik lincRNA lincRNA MGP_CASTEiJ_T0010371.1 MGP_CASTEiJ_G0008559.1 mouse_genomes_project 5 27908760 27908840 + Mir5625 miRNA miRNA MGP_CASTEiJ_T0001585.1 MGP_CASTEiJ_G0001509.1 mouse_genomes_project 5 64603519 64607757 + TEC TEC MGP_CASTEiJ_T0010376.1 MGP_CASTEiJ_G0008564.1 mouse_genomes_project 5 32532307 32532374 + Mir3097 miRNA miRNA MGP_CASTEiJ_T0014541.1 MGP_CASTEiJ_G0012704.1 mouse_genomes_project 5 87006827 87006903 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072492.1 MGP_CASTEiJ_G0028760.1 mouse_genomes_project 5 76272693 76278212 + MGP_CASTEiJ_P0072492 Arl9 protein_coding protein_coding MGP_CASTEiJ_T0072493.1 MGP_CASTEiJ_G0028760.1 mouse_genomes_project 5 76275114 76279332 + MGP_CASTEiJ_P0072493 Arl9 protein_coding protein_coding MGP_CASTEiJ_T0099925.1 MGP_CASTEiJ_G0036838.1 mouse_genomes_project 5 133358407 133358511 + Gm23761 snRNA snRNA MGP_CASTEiJ_T0073483.1 MGP_CASTEiJ_G0028994.1 mouse_genomes_project 5 111500379 111505332 - MGP_CASTEiJ_P0073483 Noc4l protein_coding protein_coding MGP_CASTEiJ_T0073484.1 MGP_CASTEiJ_G0028994.1 mouse_genomes_project 5 111500808 111501979 - Noc4l protein_coding retained_intron MGP_CASTEiJ_T0073485.1 MGP_CASTEiJ_G0028994.1 mouse_genomes_project 5 111503031 111505174 - Noc4l protein_coding retained_intron MGP_CASTEiJ_T0073486.1 MGP_CASTEiJ_G0028994.1 mouse_genomes_project 5 111503205 111505263 - Noc4l protein_coding retained_intron MGP_CASTEiJ_T0073487.1 MGP_CASTEiJ_G0028994.1 mouse_genomes_project 5 111503325 111505281 - Noc4l protein_coding retained_intron MGP_CASTEiJ_T0073488.1 MGP_CASTEiJ_G0028994.1 mouse_genomes_project 5 111504919 111505295 - Noc4l protein_coding retained_intron MGP_CASTEiJ_T0071597.1 MGP_CASTEiJ_G0028612.1 mouse_genomes_project 5 35485295 35489297 - MGP_CASTEiJ_P0071597 Msx1 protein_coding protein_coding MGP_CASTEiJ_T0071598.1 MGP_CASTEiJ_G0028612.1 mouse_genomes_project 5 35487434 35489296 - Msx1 protein_coding retained_intron MGP_CASTEiJ_T0001653.1 MGP_CASTEiJ_G0001576.1 mouse_genomes_project 5 92113420 92114383 - TEC TEC MGP_CASTEiJ_T0099933.1 MGP_CASTEiJ_G0036846.1 mouse_genomes_project 5 155059970 155060111 - Gm25284 snRNA snRNA MGP_CASTEiJ_T0010404.1 MGP_CASTEiJ_G0008592.1 mouse_genomes_project 5 114360809 114360862 - Mir7229 miRNA miRNA MGP_CASTEiJ_T0001801.1 MGP_CASTEiJ_G0001723.1 mouse_genomes_project 5 135045096 135047549 - TEC TEC MGP_CASTEiJ_T0010410.1 MGP_CASTEiJ_G0008598.1 mouse_genomes_project 5 119945428 119945520 - Gm26455 miRNA miRNA MGP_CASTEiJ_T0098387.1 MGP_CASTEiJ_G0035318.1 mouse_genomes_project 5 117357787 117357955 - pseudogene pseudogene MGP_CASTEiJ_T0001424.1 MGP_CASTEiJ_G0001352.1 mouse_genomes_project 5 24357128 24360027 + TEC TEC MGP_CASTEiJ_T0072810.1 MGP_CASTEiJ_G0028852.1 mouse_genomes_project 5 92309609 92381037 + MGP_CASTEiJ_P0072810 Uso1 protein_coding protein_coding MGP_CASTEiJ_T0072811.1 MGP_CASTEiJ_G0028852.1 mouse_genomes_project 5 92309617 92381040 + MGP_CASTEiJ_P0072811 Uso1 protein_coding protein_coding MGP_CASTEiJ_T0072812.1 MGP_CASTEiJ_G0028852.1 mouse_genomes_project 5 92309618 92360397 + Uso1 protein_coding retained_intron MGP_CASTEiJ_T0072813.1 MGP_CASTEiJ_G0028852.1 mouse_genomes_project 5 92309637 92381038 + MGP_CASTEiJ_P0072813 Uso1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072814.1 MGP_CASTEiJ_G0028852.1 mouse_genomes_project 5 92357710 92381017 + Uso1 protein_coding processed_transcript MGP_CASTEiJ_T0004588.1 MGP_CASTEiJ_G0003978.1 mouse_genomes_project 5 74275470 74276070 - Gm42802 antisense antisense MGP_CASTEiJ_T0010388.1 MGP_CASTEiJ_G0008576.1 mouse_genomes_project 5 68218767 68218873 + Gm24368 miRNA miRNA MGP_CASTEiJ_T0073399.1 MGP_CASTEiJ_G0028978.1 mouse_genomes_project 5 109474159 109669220 - MGP_CASTEiJ_P0073399 Tmed11 protein_coding protein_coding MGP_CASTEiJ_T0004636.1 MGP_CASTEiJ_G0004011.1 mouse_genomes_project 5 110967492 110970200 - antisense antisense MGP_CASTEiJ_T0001391.1 MGP_CASTEiJ_G0001320.1 mouse_genomes_project 5 6615731 6618205 - TEC TEC MGP_CASTEiJ_T0074548.1 MGP_CASTEiJ_G0029183.1 mouse_genomes_project 5 125998439 126001741 - MGP_CASTEiJ_P0074548 Hcar1 protein_coding protein_coding MGP_CASTEiJ_T0071841.1 MGP_CASTEiJ_G0028650.1 mouse_genomes_project 5 49414922 49523105 - MGP_CASTEiJ_P0071841 Ppargc1a protein_coding protein_coding MGP_CASTEiJ_T0071842.1 MGP_CASTEiJ_G0028650.1 mouse_genomes_project 5 49418323 49523194 - MGP_CASTEiJ_P0071842 Ppargc1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071843.1 MGP_CASTEiJ_G0028650.1 mouse_genomes_project 5 49418853 49538633 - MGP_CASTEiJ_P0071843 Ppargc1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071844.1 MGP_CASTEiJ_G0028650.1 mouse_genomes_project 5 49457942 49538655 - MGP_CASTEiJ_P0071844 Ppargc1a protein_coding protein_coding MGP_CASTEiJ_T0074918.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134073350 134170929 - MGP_CASTEiJ_P0074918 Auts2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0074919.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134073359 135242313 - Auts2 protein_coding processed_transcript MGP_CASTEiJ_T0074920.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134074123 134255743 - MGP_CASTEiJ_P0074920 Auts2 protein_coding protein_coding MGP_CASTEiJ_T0074921.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134074140 135241638 - Auts2 protein_coding processed_transcript MGP_CASTEiJ_T0074922.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134075407 134724112 - Auts2 protein_coding processed_transcript MGP_CASTEiJ_T0074923.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134075625 134173950 - MGP_CASTEiJ_P0074923 Auts2 protein_coding protein_coding MGP_CASTEiJ_T0074924.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134075635 134117156 - MGP_CASTEiJ_P0074924 Auts2 protein_coding protein_coding MGP_CASTEiJ_T0074925.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134075737 135240941 - Auts2 protein_coding processed_transcript MGP_CASTEiJ_T0074926.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134076650 134097415 - MGP_CASTEiJ_P0074926 Auts2 protein_coding protein_coding MGP_CASTEiJ_T0074927.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134081768 134092824 - Auts2 protein_coding processed_transcript MGP_CASTEiJ_T0074928.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134106843 134108549 - Auts2 protein_coding retained_intron MGP_CASTEiJ_T0074929.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134115462 134173236 - Auts2 protein_coding retained_intron MGP_CASTEiJ_T0074930.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134116873 134169680 - Auts2 protein_coding processed_transcript MGP_CASTEiJ_T0074931.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134169593 134173271 - Auts2 protein_coding retained_intron MGP_CASTEiJ_T0074932.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134426736 135241385 - Auts2 protein_coding retained_intron MGP_CASTEiJ_T0074933.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134696593 134700154 - Auts2 protein_coding retained_intron MGP_CASTEiJ_T0074934.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134697534 135241007 - Auts2 protein_coding processed_transcript MGP_CASTEiJ_T0074935.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134702438 134724184 - MGP_CASTEiJ_P0074935 Auts2 protein_coding protein_coding MGP_CASTEiJ_T0074936.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134702519 135129356 - MGP_CASTEiJ_P0074936 Auts2 protein_coding protein_coding MGP_CASTEiJ_T0074937.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 134723504 135241779 - Auts2 protein_coding retained_intron MGP_CASTEiJ_T0074938.1 MGP_CASTEiJ_G0029253.1 mouse_genomes_project 5 135240584 135240893 - MGP_CASTEiJ_P0074938 Auts2 protein_coding protein_coding MGP_CASTEiJ_T0075014.1 MGP_CASTEiJ_G0029260.1 mouse_genomes_project 5 137291633 137361736 - MGP_CASTEiJ_P0075014 Clip2 protein_coding protein_coding MGP_CASTEiJ_T0075015.1 MGP_CASTEiJ_G0029260.1 mouse_genomes_project 5 137291637 137361736 - MGP_CASTEiJ_P0075015 Clip2 protein_coding protein_coding MGP_CASTEiJ_T0075016.1 MGP_CASTEiJ_G0029260.1 mouse_genomes_project 5 137319050 137321497 - Clip2 protein_coding retained_intron MGP_CASTEiJ_T0072203.1 MGP_CASTEiJ_G0028712.1 mouse_genomes_project 5 68439033 68461000 - MGP_CASTEiJ_P0072203 Gnpda2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072204.1 MGP_CASTEiJ_G0028712.1 mouse_genomes_project 5 68440921 68462599 - MGP_CASTEiJ_P0072204 Gnpda2 protein_coding protein_coding MGP_CASTEiJ_T0072205.1 MGP_CASTEiJ_G0028712.1 mouse_genomes_project 5 68442306 68461036 - MGP_CASTEiJ_P0072205 Gnpda2 protein_coding protein_coding MGP_CASTEiJ_T0072206.1 MGP_CASTEiJ_G0028712.1 mouse_genomes_project 5 68442311 68462505 - Gnpda2 protein_coding retained_intron MGP_CASTEiJ_T0072207.1 MGP_CASTEiJ_G0028712.1 mouse_genomes_project 5 68442948 68462533 - MGP_CASTEiJ_P0072207 Gnpda2 protein_coding protein_coding MGP_CASTEiJ_T0072208.1 MGP_CASTEiJ_G0028712.1 mouse_genomes_project 5 68443882 68462552 - MGP_CASTEiJ_P0072208 Gnpda2 protein_coding protein_coding MGP_CASTEiJ_T0072209.1 MGP_CASTEiJ_G0028712.1 mouse_genomes_project 5 68454868 68462548 - MGP_CASTEiJ_P0072209 Gnpda2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0007936.1 MGP_CASTEiJ_G0006486.1 mouse_genomes_project 5 58315528 58339738 - 4933402J10Rik lincRNA lincRNA MGP_CASTEiJ_T0007937.1 MGP_CASTEiJ_G0006486.1 mouse_genomes_project 5 58315533 58339732 - 4933402J10Rik lincRNA lincRNA MGP_CASTEiJ_T0014587.1 MGP_CASTEiJ_G0012750.1 mouse_genomes_project 5 106354891 106355356 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001815.1 MGP_CASTEiJ_G0001736.1 mouse_genomes_project 5 137775053 137776719 - TEC TEC MGP_CASTEiJ_T0071589.1 MGP_CASTEiJ_G0028609.1 mouse_genomes_project 5 34977258 35072020 + MGP_CASTEiJ_P0071589 Evc2 protein_coding protein_coding MGP_CASTEiJ_T0071590.1 MGP_CASTEiJ_G0028609.1 mouse_genomes_project 5 34977367 35033139 + Evc2 protein_coding retained_intron MGP_CASTEiJ_T0071591.1 MGP_CASTEiJ_G0028609.1 mouse_genomes_project 5 35035233 35037339 + Evc2 protein_coding processed_transcript MGP_CASTEiJ_T0071592.1 MGP_CASTEiJ_G0028609.1 mouse_genomes_project 5 35062846 35064909 + Evc2 protein_coding retained_intron MGP_CASTEiJ_T0070393.1 MGP_CASTEiJ_G0028409.1 mouse_genomes_project 5 11226252 11467942 + Sema3e protein_coding retained_intron MGP_CASTEiJ_T0070394.1 MGP_CASTEiJ_G0028409.1 mouse_genomes_project 5 11226252 11470336 + MGP_CASTEiJ_P0070394 Sema3e protein_coding protein_coding MGP_CASTEiJ_T0070395.1 MGP_CASTEiJ_G0028409.1 mouse_genomes_project 5 11442862 11444711 + Sema3e protein_coding retained_intron MGP_CASTEiJ_T0011280.1 MGP_CASTEiJ_G0009468.1 mouse_genomes_project 5 119715323 119715613 - Gm24050 misc_RNA misc_RNA MGP_CASTEiJ_T0070231.1 MGP_CASTEiJ_G0028386.1 mouse_genomes_project 5 2493308 2522756 - Cldn12 protein_coding processed_transcript MGP_CASTEiJ_T0070232.1 MGP_CASTEiJ_G0028386.1 mouse_genomes_project 5 2512873 2522633 - MGP_CASTEiJ_P0070232 Cldn12 protein_coding protein_coding MGP_CASTEiJ_T0070233.1 MGP_CASTEiJ_G0028386.1 mouse_genomes_project 5 2512968 2522717 - MGP_CASTEiJ_P0070233 Cldn12 protein_coding protein_coding MGP_CASTEiJ_T0070234.1 MGP_CASTEiJ_G0028386.1 mouse_genomes_project 5 2512970 2522669 - MGP_CASTEiJ_P0070234 Cldn12 protein_coding protein_coding MGP_CASTEiJ_T0070235.1 MGP_CASTEiJ_G0028386.1 mouse_genomes_project 5 2513082 2522574 - MGP_CASTEiJ_P0070235 Cldn12 protein_coding protein_coding MGP_CASTEiJ_T0070236.1 MGP_CASTEiJ_G0028386.1 mouse_genomes_project 5 2516276 2522633 - MGP_CASTEiJ_P0070236 Cldn12 protein_coding protein_coding MGP_CASTEiJ_T0070237.1 MGP_CASTEiJ_G0028386.1 mouse_genomes_project 5 2518937 2522802 - Cldn12 protein_coding processed_transcript MGP_CASTEiJ_T0070238.1 MGP_CASTEiJ_G0028386.1 mouse_genomes_project 5 2521062 2522293 - Cldn12 protein_coding processed_transcript MGP_CASTEiJ_T0073124.1 MGP_CASTEiJ_G0028914.1 mouse_genomes_project 5 103944116 103968261 - MGP_CASTEiJ_P0073124 Klhl8 protein_coding protein_coding MGP_CASTEiJ_T0073125.1 MGP_CASTEiJ_G0028914.1 mouse_genomes_project 5 103944116 103968261 - MGP_CASTEiJ_P0073125 Klhl8 protein_coding protein_coding MGP_CASTEiJ_T0073126.1 MGP_CASTEiJ_G0028914.1 mouse_genomes_project 5 103944193 103994529 - MGP_CASTEiJ_P0073126 Klhl8 protein_coding protein_coding MGP_CASTEiJ_T0073127.1 MGP_CASTEiJ_G0028914.1 mouse_genomes_project 5 103944223 103968261 - MGP_CASTEiJ_P0073127 Klhl8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073128.1 MGP_CASTEiJ_G0028914.1 mouse_genomes_project 5 103952422 103956484 - Klhl8 protein_coding retained_intron MGP_CASTEiJ_T0001425.1 MGP_CASTEiJ_G0001353.1 mouse_genomes_project 5 24380293 24382891 + TEC TEC MGP_CASTEiJ_T0011270.1 MGP_CASTEiJ_G0009458.1 mouse_genomes_project 5 100354831 100354969 + Gm28030 misc_RNA misc_RNA MGP_CASTEiJ_T0011277.1 MGP_CASTEiJ_G0009465.1 mouse_genomes_project 5 113164791 113164865 - Gm27882 misc_RNA misc_RNA MGP_CASTEiJ_T0001427.1 MGP_CASTEiJ_G0001355.1 mouse_genomes_project 5 25371922 25372287 - TEC TEC MGP_CASTEiJ_T0008228.1 MGP_CASTEiJ_G0006688.1 mouse_genomes_project 5 150233922 150235462 - Gm43625 lincRNA lincRNA MGP_CASTEiJ_T0008223.1 MGP_CASTEiJ_G0006685.1 mouse_genomes_project 5 147514286 147521960 + D130017N08Rik lincRNA lincRNA MGP_CASTEiJ_T0008224.1 MGP_CASTEiJ_G0006685.1 mouse_genomes_project 5 147515804 147523280 + D130017N08Rik lincRNA lincRNA MGP_CASTEiJ_T0008226.1 MGP_CASTEiJ_G0006685.1 mouse_genomes_project 5 147522461 147524658 + D130017N08Rik lincRNA lincRNA MGP_CASTEiJ_T0001631.1 MGP_CASTEiJ_G0001554.1 mouse_genomes_project 5 73101430 73102177 + TEC TEC MGP_CASTEiJ_T0099867.1 MGP_CASTEiJ_G0036780.1 mouse_genomes_project 5 22717816 22717987 + Gm22656 snRNA snRNA MGP_CASTEiJ_T0014648.1 MGP_CASTEiJ_G0012811.1 mouse_genomes_project 5 139890771 139891164 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014424.1 MGP_CASTEiJ_G0012587.1 mouse_genomes_project 5 28675760 28676384 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001497.1 MGP_CASTEiJ_G0001423.1 mouse_genomes_project 5 46139976 46141728 + TEC TEC MGP_CASTEiJ_T0007962.1 MGP_CASTEiJ_G0006505.1 mouse_genomes_project 5 73141663 73144025 + Dancr lincRNA lincRNA MGP_CASTEiJ_T0007963.1 MGP_CASTEiJ_G0006505.1 mouse_genomes_project 5 73141663 73144024 + Dancr lincRNA lincRNA MGP_CASTEiJ_T0071724.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41712868 41832208 - MGP_CASTEiJ_P0071724 Prom1 protein_coding protein_coding MGP_CASTEiJ_T0071725.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41712870 41831935 - MGP_CASTEiJ_P0071725 Prom1 protein_coding protein_coding MGP_CASTEiJ_T0071726.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41712870 41832286 - MGP_CASTEiJ_P0071726 Prom1 protein_coding protein_coding MGP_CASTEiJ_T0071727.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41712870 41725406 - MGP_CASTEiJ_P0071727 Prom1 protein_coding protein_coding MGP_CASTEiJ_T0071728.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41712870 41829466 - MGP_CASTEiJ_P0071728 Prom1 protein_coding protein_coding MGP_CASTEiJ_T0071729.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41712873 41825139 - MGP_CASTEiJ_P0071729 Prom1 protein_coding protein_coding MGP_CASTEiJ_T0071730.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41712873 41825139 - MGP_CASTEiJ_P0071730 Prom1 protein_coding protein_coding MGP_CASTEiJ_T0071731.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41721771 41829433 - MGP_CASTEiJ_P0071731 Prom1 protein_coding protein_coding MGP_CASTEiJ_T0071732.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41721934 41825139 - MGP_CASTEiJ_P0071732 Prom1 protein_coding protein_coding MGP_CASTEiJ_T0071733.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41721934 41825084 - MGP_CASTEiJ_P0071733 Prom1 protein_coding protein_coding MGP_CASTEiJ_T0071734.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41721934 41825084 - MGP_CASTEiJ_P0071734 Prom1 protein_coding protein_coding MGP_CASTEiJ_T0071735.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41733048 41755938 - Prom1 protein_coding retained_intron MGP_CASTEiJ_T0071736.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41749714 41772462 - MGP_CASTEiJ_P0071736 Prom1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071737.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41752598 41771520 - Prom1 protein_coding retained_intron MGP_CASTEiJ_T0071738.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41770890 41832212 - Prom1 protein_coding retained_intron MGP_CASTEiJ_T0071739.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41774533 41797937 - Prom1 protein_coding processed_transcript MGP_CASTEiJ_T0071740.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41785480 41829427 - MGP_CASTEiJ_P0071740 Prom1 protein_coding protein_coding MGP_CASTEiJ_T0071741.1 MGP_CASTEiJ_G0028636.1 mouse_genomes_project 5 41829907 41832212 - Prom1 protein_coding processed_transcript MGP_CASTEiJ_T0102340.1 MGP_CASTEiJ_G0039065.1 mouse_genomes_project 5 14077968 14085446 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0074080.1 MGP_CASTEiJ_G0029108.1 mouse_genomes_project 5 122214158 122236456 - MGP_CASTEiJ_P0074080 Plbd2 protein_coding protein_coding MGP_CASTEiJ_T0074081.1 MGP_CASTEiJ_G0029108.1 mouse_genomes_project 5 122216122 122236432 - Plbd2 protein_coding retained_intron MGP_CASTEiJ_T0074082.1 MGP_CASTEiJ_G0029108.1 mouse_genomes_project 5 122218174 122236443 - Plbd2 protein_coding retained_intron MGP_CASTEiJ_T0099924.1 MGP_CASTEiJ_G0036837.1 mouse_genomes_project 5 128790566 128790673 - Gm24839 snRNA snRNA MGP_CASTEiJ_T0001508.1 MGP_CASTEiJ_G0001433.1 mouse_genomes_project 5 46832138 46834107 - TEC TEC MGP_CASTEiJ_T0014463.1 MGP_CASTEiJ_G0012626.1 mouse_genomes_project 5 47810303 47812603 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014405.1 MGP_CASTEiJ_G0012568.1 mouse_genomes_project 5 23285411 23286506 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008096.1 MGP_CASTEiJ_G0006599.1 mouse_genomes_project 5 113551101 113551835 + Gm27004 lincRNA lincRNA MGP_CASTEiJ_T0004498.1 MGP_CASTEiJ_G0003905.1 mouse_genomes_project 5 509393 510127 - Gm43825 antisense antisense MGP_CASTEiJ_T0007891.1 MGP_CASTEiJ_G0006452.1 mouse_genomes_project 5 32918053 32927343 - E130018O15Rik lincRNA lincRNA MGP_CASTEiJ_T0076204.1 MGP_CASTEiJ_G0029501.1 mouse_genomes_project 5 153837618 153874855 + MGP_CASTEiJ_P0076204 Tex26 protein_coding protein_coding MGP_CASTEiJ_T0076205.1 MGP_CASTEiJ_G0029501.1 mouse_genomes_project 5 153837640 153840835 + Tex26 protein_coding processed_transcript MGP_CASTEiJ_T0076206.1 MGP_CASTEiJ_G0029501.1 mouse_genomes_project 5 153837661 153875218 + MGP_CASTEiJ_P0076206 Tex26 protein_coding protein_coding MGP_CASTEiJ_T0076207.1 MGP_CASTEiJ_G0029501.1 mouse_genomes_project 5 153837664 153874855 + MGP_CASTEiJ_P0076207 Tex26 protein_coding protein_coding MGP_CASTEiJ_T0076208.1 MGP_CASTEiJ_G0029501.1 mouse_genomes_project 5 153837664 153874855 + MGP_CASTEiJ_P0076208 Tex26 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076209.1 MGP_CASTEiJ_G0029501.1 mouse_genomes_project 5 153837673 153874767 + MGP_CASTEiJ_P0076209 Tex26 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076210.1 MGP_CASTEiJ_G0029501.1 mouse_genomes_project 5 153837677 153874767 + MGP_CASTEiJ_P0076210 Tex26 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0008091.1 MGP_CASTEiJ_G0006598.1 mouse_genomes_project 5 113165111 113166552 + lincRNA lincRNA MGP_CASTEiJ_T0101629.1 MGP_CASTEiJ_G0038483.1 mouse_genomes_project 5 120017820 120037413 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101630.1 MGP_CASTEiJ_G0038483.1 mouse_genomes_project 5 120036752 120037230 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0008262.1 MGP_CASTEiJ_G0006713.1 mouse_genomes_project 5 154247498 154257242 - Gm21221 lincRNA lincRNA MGP_CASTEiJ_T0001573.1 MGP_CASTEiJ_G0001497.1 mouse_genomes_project 5 64084102 64085575 - TEC TEC MGP_CASTEiJ_T0075923.1 MGP_CASTEiJ_G0029444.1 mouse_genomes_project 5 147631975 147645647 + Rsph10b protein_coding processed_transcript MGP_CASTEiJ_T0075924.1 MGP_CASTEiJ_G0029444.1 mouse_genomes_project 5 147632002 147695577 + MGP_CASTEiJ_P0075924 Rsph10b protein_coding protein_coding MGP_CASTEiJ_T0075925.1 MGP_CASTEiJ_G0029444.1 mouse_genomes_project 5 147636023 147695581 + MGP_CASTEiJ_P0075925 Rsph10b protein_coding unknown_likely_coding MGP_CASTEiJ_T0075926.1 MGP_CASTEiJ_G0029444.1 mouse_genomes_project 5 147636023 147645644 + MGP_CASTEiJ_P0075926 Rsph10b protein_coding protein_coding MGP_CASTEiJ_T0075927.1 MGP_CASTEiJ_G0029444.1 mouse_genomes_project 5 147688978 147695386 + Rsph10b protein_coding processed_transcript MGP_CASTEiJ_T0073046.1 MGP_CASTEiJ_G0028900.1 mouse_genomes_project 5 100625772 100673959 - MGP_CASTEiJ_P0073046 Hpse protein_coding protein_coding MGP_CASTEiJ_T0073047.1 MGP_CASTEiJ_G0028900.1 mouse_genomes_project 5 100630876 100673948 - MGP_CASTEiJ_P0073047 Hpse protein_coding protein_coding MGP_CASTEiJ_T0004494.1 MGP_CASTEiJ_G0003902.1 mouse_genomes_project 5 337653 348494 - Gm17590 antisense antisense MGP_CASTEiJ_T0004495.1 MGP_CASTEiJ_G0003902.1 mouse_genomes_project 5 337863 337971 - Gm17590 antisense antisense MGP_CASTEiJ_T0007943.1 MGP_CASTEiJ_G0006492.1 mouse_genomes_project 5 63028877 63042855 - 1700027F09Rik lincRNA lincRNA MGP_CASTEiJ_T0010443.1 MGP_CASTEiJ_G0008631.1 mouse_genomes_project 5 153635378 153635456 - miRNA miRNA MGP_CASTEiJ_T0073149.1 MGP_CASTEiJ_G0028924.1 mouse_genomes_project 5 104546073 104552138 + MGP_CASTEiJ_P0073149 Spp1 protein_coding protein_coding MGP_CASTEiJ_T0073150.1 MGP_CASTEiJ_G0028924.1 mouse_genomes_project 5 104546073 104552136 + MGP_CASTEiJ_P0073150 Spp1 protein_coding protein_coding MGP_CASTEiJ_T0073151.1 MGP_CASTEiJ_G0028924.1 mouse_genomes_project 5 104546076 104552135 + MGP_CASTEiJ_P0073151 Spp1 protein_coding protein_coding MGP_CASTEiJ_T0073152.1 MGP_CASTEiJ_G0028924.1 mouse_genomes_project 5 104546094 104550625 + MGP_CASTEiJ_P0073152 Spp1 protein_coding protein_coding MGP_CASTEiJ_T0073153.1 MGP_CASTEiJ_G0028924.1 mouse_genomes_project 5 104546097 104550587 + MGP_CASTEiJ_P0073153 Spp1 protein_coding protein_coding MGP_CASTEiJ_T0073154.1 MGP_CASTEiJ_G0028924.1 mouse_genomes_project 5 104546113 104548721 + MGP_CASTEiJ_P0073154 Spp1 protein_coding protein_coding MGP_CASTEiJ_T0073155.1 MGP_CASTEiJ_G0028924.1 mouse_genomes_project 5 104547201 104552131 + MGP_CASTEiJ_P0073155 Spp1 protein_coding protein_coding MGP_CASTEiJ_T0070920.1 MGP_CASTEiJ_G0028509.1 mouse_genomes_project 5 28178404 28186314 + MGP_CASTEiJ_P0070920 Emilin1 protein_coding protein_coding MGP_CASTEiJ_T0070921.1 MGP_CASTEiJ_G0028509.1 mouse_genomes_project 5 28178741 28185904 + Emilin1 protein_coding retained_intron MGP_CASTEiJ_T0070922.1 MGP_CASTEiJ_G0028509.1 mouse_genomes_project 5 28184959 28186088 + Emilin1 protein_coding retained_intron MGP_CASTEiJ_T0070871.1 MGP_CASTEiJ_G0028503.1 mouse_genomes_project 5 27929464 27936657 + MGP_CASTEiJ_P0070871 Cenpa protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070872.1 MGP_CASTEiJ_G0028503.1 mouse_genomes_project 5 27929479 27936594 + MGP_CASTEiJ_P0070872 Cenpa protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070873.1 MGP_CASTEiJ_G0028503.1 mouse_genomes_project 5 27929502 27936688 + Cenpa protein_coding retained_intron MGP_CASTEiJ_T0070874.1 MGP_CASTEiJ_G0028503.1 mouse_genomes_project 5 27929510 27932171 + MGP_CASTEiJ_P0070874 Cenpa protein_coding protein_coding MGP_CASTEiJ_T0070875.1 MGP_CASTEiJ_G0028503.1 mouse_genomes_project 5 27929524 27936342 + MGP_CASTEiJ_P0070875 Cenpa protein_coding protein_coding MGP_CASTEiJ_T0070876.1 MGP_CASTEiJ_G0028503.1 mouse_genomes_project 5 27929525 27936687 + MGP_CASTEiJ_P0070876 Cenpa protein_coding unknown_likely_coding MGP_CASTEiJ_T0070877.1 MGP_CASTEiJ_G0028503.1 mouse_genomes_project 5 27929527 27933041 + Cenpa protein_coding retained_intron MGP_CASTEiJ_T0070878.1 MGP_CASTEiJ_G0028503.1 mouse_genomes_project 5 27929541 27936688 + MGP_CASTEiJ_P0070878 Cenpa protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070879.1 MGP_CASTEiJ_G0028503.1 mouse_genomes_project 5 27929565 27936665 + MGP_CASTEiJ_P0070879 Cenpa protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070880.1 MGP_CASTEiJ_G0028503.1 mouse_genomes_project 5 27934230 27936481 + Cenpa protein_coding retained_intron MGP_CASTEiJ_T0014482.1 MGP_CASTEiJ_G0012645.1 mouse_genomes_project 5 57346519 57347473 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001675.1 MGP_CASTEiJ_G0001598.1 mouse_genomes_project 5 103026830 103029311 - TEC TEC MGP_CASTEiJ_T0008000.1 MGP_CASTEiJ_G0006537.1 mouse_genomes_project 5 93009703 93015027 - 4932430I15Rik lincRNA lincRNA MGP_CASTEiJ_T0072361.1 MGP_CASTEiJ_G0028741.1 mouse_genomes_project 5 73614460 73684698 + MGP_CASTEiJ_P0072361 Fip1l1 protein_coding protein_coding MGP_CASTEiJ_T0072362.1 MGP_CASTEiJ_G0028741.1 mouse_genomes_project 5 73614482 73684708 + MGP_CASTEiJ_P0072362 Fip1l1 protein_coding protein_coding MGP_CASTEiJ_T0072363.1 MGP_CASTEiJ_G0028741.1 mouse_genomes_project 5 73614490 73678337 + MGP_CASTEiJ_P0072363 Fip1l1 protein_coding protein_coding MGP_CASTEiJ_T0072364.1 MGP_CASTEiJ_G0028741.1 mouse_genomes_project 5 73614492 73682052 + MGP_CASTEiJ_P0072364 Fip1l1 protein_coding protein_coding MGP_CASTEiJ_T0072365.1 MGP_CASTEiJ_G0028741.1 mouse_genomes_project 5 73614495 73619574 + Fip1l1 protein_coding retained_intron MGP_CASTEiJ_T0072366.1 MGP_CASTEiJ_G0028741.1 mouse_genomes_project 5 73614514 73677719 + MGP_CASTEiJ_P0072366 Fip1l1 protein_coding protein_coding MGP_CASTEiJ_T0072367.1 MGP_CASTEiJ_G0028741.1 mouse_genomes_project 5 73614695 73671442 + Fip1l1 protein_coding retained_intron MGP_CASTEiJ_T0072368.1 MGP_CASTEiJ_G0028741.1 mouse_genomes_project 5 73614990 73624462 + Fip1l1 protein_coding processed_transcript MGP_CASTEiJ_T0072369.1 MGP_CASTEiJ_G0028741.1 mouse_genomes_project 5 73670747 73677819 + Fip1l1 protein_coding retained_intron MGP_CASTEiJ_T0072370.1 MGP_CASTEiJ_G0028741.1 mouse_genomes_project 5 73670792 73674232 + Fip1l1 protein_coding retained_intron MGP_CASTEiJ_T0072371.1 MGP_CASTEiJ_G0028741.1 mouse_genomes_project 5 73672143 73674427 + Fip1l1 protein_coding retained_intron MGP_CASTEiJ_T0072372.1 MGP_CASTEiJ_G0028741.1 mouse_genomes_project 5 73672813 73677909 + Fip1l1 protein_coding retained_intron MGP_CASTEiJ_T0072377.1 MGP_CASTEiJ_G0028741.1 mouse_genomes_project 5 73680626 73681837 + Fip1l1 protein_coding retained_intron MGP_CASTEiJ_T0014560.1 MGP_CASTEiJ_G0012723.1 mouse_genomes_project 5 92742015 92742306 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071891.1 MGP_CASTEiJ_G0028660.1 mouse_genomes_project 5 51174355 51287760 - MGP_CASTEiJ_P0071891 Sel1l3 protein_coding protein_coding MGP_CASTEiJ_T0071892.1 MGP_CASTEiJ_G0028660.1 mouse_genomes_project 5 51212189 51287623 - Sel1l3 protein_coding retained_intron MGP_CASTEiJ_T0071893.1 MGP_CASTEiJ_G0028660.1 mouse_genomes_project 5 51223017 51226397 - Sel1l3 protein_coding retained_intron MGP_CASTEiJ_T0071894.1 MGP_CASTEiJ_G0028660.1 mouse_genomes_project 5 51225311 51242750 - Sel1l3 protein_coding processed_transcript MGP_CASTEiJ_T0071895.1 MGP_CASTEiJ_G0028660.1 mouse_genomes_project 5 51270214 51288230 - Sel1l3 protein_coding retained_intron MGP_CASTEiJ_T0004513.1 MGP_CASTEiJ_G0003918.1 mouse_genomes_project 5 21449199 21452507 + Gm15589 antisense antisense MGP_CASTEiJ_T0074494.1 MGP_CASTEiJ_G0029178.1 mouse_genomes_project 5 125675897 125793249 - MGP_CASTEiJ_P0074494 Clip1 protein_coding protein_coding MGP_CASTEiJ_T0074495.1 MGP_CASTEiJ_G0029178.1 mouse_genomes_project 5 125675897 125793545 - MGP_CASTEiJ_P0074495 Clip1 protein_coding protein_coding MGP_CASTEiJ_T0074496.1 MGP_CASTEiJ_G0029178.1 mouse_genomes_project 5 125675909 125753060 - MGP_CASTEiJ_P0074496 Clip1 protein_coding protein_coding MGP_CASTEiJ_T0074497.1 MGP_CASTEiJ_G0029178.1 mouse_genomes_project 5 125675909 125793205 - MGP_CASTEiJ_P0074497 Clip1 protein_coding protein_coding MGP_CASTEiJ_T0074498.1 MGP_CASTEiJ_G0029178.1 mouse_genomes_project 5 125675920 125702275 - Clip1 protein_coding retained_intron MGP_CASTEiJ_T0074499.1 MGP_CASTEiJ_G0029178.1 mouse_genomes_project 5 125675969 125676660 - Clip1 protein_coding processed_transcript MGP_CASTEiJ_T0074500.1 MGP_CASTEiJ_G0029178.1 mouse_genomes_project 5 125676935 125793252 - MGP_CASTEiJ_P0074500 Clip1 protein_coding protein_coding MGP_CASTEiJ_T0074501.1 MGP_CASTEiJ_G0029178.1 mouse_genomes_project 5 125677176 125710699 - Clip1 protein_coding retained_intron MGP_CASTEiJ_T0074502.1 MGP_CASTEiJ_G0029178.1 mouse_genomes_project 5 125677346 125758524 - MGP_CASTEiJ_P0074502 Clip1 protein_coding protein_coding MGP_CASTEiJ_T0074503.1 MGP_CASTEiJ_G0029178.1 mouse_genomes_project 5 125677553 125716444 - MGP_CASTEiJ_P0074503 Clip1 protein_coding protein_coding MGP_CASTEiJ_T0074504.1 MGP_CASTEiJ_G0029178.1 mouse_genomes_project 5 125684306 125716084 - Clip1 protein_coding retained_intron MGP_CASTEiJ_T0074505.1 MGP_CASTEiJ_G0029178.1 mouse_genomes_project 5 125688220 125702184 - Clip1 protein_coding retained_intron MGP_CASTEiJ_T0074506.1 MGP_CASTEiJ_G0029178.1 mouse_genomes_project 5 125716278 125758414 - MGP_CASTEiJ_P0074506 Clip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074507.1 MGP_CASTEiJ_G0029178.1 mouse_genomes_project 5 125716327 125775094 - MGP_CASTEiJ_P0074507 Clip1 protein_coding protein_coding MGP_CASTEiJ_T0074508.1 MGP_CASTEiJ_G0029178.1 mouse_genomes_project 5 125736582 125739273 - Clip1 protein_coding retained_intron MGP_CASTEiJ_T0075557.1 MGP_CASTEiJ_G0029367.1 mouse_genomes_project 5 141425612 141440553 - MGP_CASTEiJ_P0075557 Gm43720 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075985.1 MGP_CASTEiJ_G0029457.1 mouse_genomes_project 5 148902916 148933109 + MGP_CASTEiJ_P0075985 Arpc1a protein_coding protein_coding MGP_CASTEiJ_T0075986.1 MGP_CASTEiJ_G0029457.1 mouse_genomes_project 5 148902970 148917927 + Arpc1a protein_coding processed_transcript MGP_CASTEiJ_T0075987.1 MGP_CASTEiJ_G0029457.1 mouse_genomes_project 5 148902992 148933104 + MGP_CASTEiJ_P0075987 Arpc1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075988.1 MGP_CASTEiJ_G0029457.1 mouse_genomes_project 5 148903185 148918966 + MGP_CASTEiJ_P0075988 Arpc1a protein_coding protein_coding MGP_CASTEiJ_T0075989.1 MGP_CASTEiJ_G0029457.1 mouse_genomes_project 5 148918000 148920737 + Arpc1a protein_coding retained_intron MGP_CASTEiJ_T0071543.1 MGP_CASTEiJ_G0028602.1 mouse_genomes_project 5 34398044 34401217 - MGP_CASTEiJ_P0071543 Mrfap1 protein_coding protein_coding MGP_CASTEiJ_T0010362.1 MGP_CASTEiJ_G0008550.1 mouse_genomes_project 5 1817485 1817623 - miRNA miRNA MGP_CASTEiJ_T0014624.1 MGP_CASTEiJ_G0012787.1 mouse_genomes_project 5 118737646 118738024 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004643.1 MGP_CASTEiJ_G0004017.1 mouse_genomes_project 5 112263387 112264175 - Gm43118 antisense antisense MGP_CASTEiJ_T0075493.1 MGP_CASTEiJ_G0029353.1 mouse_genomes_project 5 141058975 141069734 + MGP_CASTEiJ_P0075493 Azgp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075494.1 MGP_CASTEiJ_G0029353.1 mouse_genomes_project 5 141058994 141069734 + MGP_CASTEiJ_P0075494 Azgp1 protein_coding protein_coding MGP_CASTEiJ_T0075495.1 MGP_CASTEiJ_G0029353.1 mouse_genomes_project 5 141059023 141065195 + Azgp1 protein_coding retained_intron MGP_CASTEiJ_T0071172.1 MGP_CASTEiJ_G0028544.1 mouse_genomes_project 5 29978942 30047008 + MGP_CASTEiJ_P0071172 Yes1 protein_coding protein_coding MGP_CASTEiJ_T0071173.1 MGP_CASTEiJ_G0028544.1 mouse_genomes_project 5 29979155 29981877 + Yes1 protein_coding retained_intron MGP_CASTEiJ_T0071174.1 MGP_CASTEiJ_G0028544.1 mouse_genomes_project 5 30005891 30019835 + MGP_CASTEiJ_P0071174 Yes1 protein_coding protein_coding MGP_CASTEiJ_T0073660.1 MGP_CASTEiJ_G0029028.1 mouse_genomes_project 5 114873588 114880401 - MGP_CASTEiJ_P0073660 Tmem119 protein_coding protein_coding MGP_CASTEiJ_T0073661.1 MGP_CASTEiJ_G0029028.1 mouse_genomes_project 5 114875496 114880331 - MGP_CASTEiJ_P0073661 Tmem119 protein_coding protein_coding MGP_CASTEiJ_T0071696.1 MGP_CASTEiJ_G0028630.1 mouse_genomes_project 5 41216187 41327718 + MGP_CASTEiJ_P0071696 C1qtnf7 protein_coding protein_coding MGP_CASTEiJ_T0071697.1 MGP_CASTEiJ_G0028630.1 mouse_genomes_project 5 41216411 41315505 + MGP_CASTEiJ_P0071697 C1qtnf7 protein_coding protein_coding MGP_CASTEiJ_T0071698.1 MGP_CASTEiJ_G0028630.1 mouse_genomes_project 5 41308157 41325508 + MGP_CASTEiJ_P0071698 C1qtnf7 protein_coding protein_coding MGP_CASTEiJ_T0001678.1 MGP_CASTEiJ_G0001601.1 mouse_genomes_project 5 104133971 104136748 - TEC TEC MGP_CASTEiJ_T0073513.1 MGP_CASTEiJ_G0028998.1 mouse_genomes_project 5 111635968 111661592 - MGP_CASTEiJ_P0073513 Ulk1 protein_coding protein_coding MGP_CASTEiJ_T0073514.1 MGP_CASTEiJ_G0028998.1 mouse_genomes_project 5 111637498 111639443 - MGP_CASTEiJ_P0073514 Ulk1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073515.1 MGP_CASTEiJ_G0028998.1 mouse_genomes_project 5 111637520 111640551 - MGP_CASTEiJ_P0073515 Ulk1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073516.1 MGP_CASTEiJ_G0028998.1 mouse_genomes_project 5 111637537 111638720 - Ulk1 protein_coding retained_intron MGP_CASTEiJ_T0073517.1 MGP_CASTEiJ_G0028998.1 mouse_genomes_project 5 111637592 111661548 - MGP_CASTEiJ_P0073517 Ulk1 protein_coding protein_coding MGP_CASTEiJ_T0073518.1 MGP_CASTEiJ_G0028998.1 mouse_genomes_project 5 111639388 111640165 - Ulk1 protein_coding retained_intron MGP_CASTEiJ_T0073519.1 MGP_CASTEiJ_G0028998.1 mouse_genomes_project 5 111639754 111640964 - Ulk1 protein_coding retained_intron MGP_CASTEiJ_T0073520.1 MGP_CASTEiJ_G0028998.1 mouse_genomes_project 5 111642898 111643693 - Ulk1 protein_coding retained_intron MGP_CASTEiJ_T0073521.1 MGP_CASTEiJ_G0028998.1 mouse_genomes_project 5 111643173 111644913 - Ulk1 protein_coding retained_intron MGP_CASTEiJ_T0073522.1 MGP_CASTEiJ_G0028998.1 mouse_genomes_project 5 111643896 111647297 - Ulk1 protein_coding processed_transcript MGP_CASTEiJ_T0073523.1 MGP_CASTEiJ_G0028998.1 mouse_genomes_project 5 111645108 111647334 - Ulk1 protein_coding retained_intron MGP_CASTEiJ_T0073993.1 MGP_CASTEiJ_G0029090.1 mouse_genomes_project 5 118757225 118795420 + MGP_CASTEiJ_P0073993 Vsig10 protein_coding protein_coding MGP_CASTEiJ_T0073994.1 MGP_CASTEiJ_G0029090.1 mouse_genomes_project 5 118757435 118793526 + MGP_CASTEiJ_P0073994 Vsig10 protein_coding protein_coding MGP_CASTEiJ_T0073995.1 MGP_CASTEiJ_G0029090.1 mouse_genomes_project 5 118757461 118779251 + Vsig10 protein_coding retained_intron MGP_CASTEiJ_T0073996.1 MGP_CASTEiJ_G0029090.1 mouse_genomes_project 5 118757504 118765123 + Vsig10 protein_coding retained_intron MGP_CASTEiJ_T0073997.1 MGP_CASTEiJ_G0029090.1 mouse_genomes_project 5 118763580 118795412 + Vsig10 protein_coding processed_transcript MGP_CASTEiJ_T0073998.1 MGP_CASTEiJ_G0029090.1 mouse_genomes_project 5 118790138 118795420 + Vsig10 protein_coding processed_transcript MGP_CASTEiJ_T0007951.1 MGP_CASTEiJ_G0006497.1 mouse_genomes_project 5 63278188 63281239 - Gm26761 lincRNA lincRNA MGP_CASTEiJ_T0008269.1 MGP_CASTEiJ_G0006719.1 mouse_genomes_project 5 155111540 155118200 - Gm43597 lincRNA lincRNA MGP_CASTEiJ_T0008270.1 MGP_CASTEiJ_G0006719.1 mouse_genomes_project 5 155111545 155118163 - Gm43597 lincRNA lincRNA MGP_CASTEiJ_T0008271.1 MGP_CASTEiJ_G0006719.1 mouse_genomes_project 5 155113504 155118080 - Gm43597 lincRNA lincRNA MGP_CASTEiJ_T0011268.1 MGP_CASTEiJ_G0009456.1 mouse_genomes_project 5 100343291 100343365 + Gm27553 misc_RNA misc_RNA MGP_CASTEiJ_T0071921.1 MGP_CASTEiJ_G0028665.1 mouse_genomes_project 5 52110739 52241807 + MGP_CASTEiJ_P0071921 Stim2 protein_coding protein_coding MGP_CASTEiJ_T0071922.1 MGP_CASTEiJ_G0028665.1 mouse_genomes_project 5 52111047 52241816 + MGP_CASTEiJ_P0071922 Stim2 protein_coding protein_coding MGP_CASTEiJ_T0071923.1 MGP_CASTEiJ_G0028665.1 mouse_genomes_project 5 52192711 52223989 + Stim2 protein_coding processed_transcript MGP_CASTEiJ_T0071924.1 MGP_CASTEiJ_G0028665.1 mouse_genomes_project 5 52236622 52239343 + Stim2 protein_coding retained_intron MGP_CASTEiJ_T0071154.1 MGP_CASTEiJ_G0028541.1 mouse_genomes_project 5 29471618 29495045 + MGP_CASTEiJ_P0071154 Fosl2 protein_coding protein_coding MGP_CASTEiJ_T0071155.1 MGP_CASTEiJ_G0028541.1 mouse_genomes_project 5 29471990 29475463 + Fosl2 protein_coding retained_intron MGP_CASTEiJ_T0071156.1 MGP_CASTEiJ_G0028541.1 mouse_genomes_project 5 29482424 29490909 + Fosl2 protein_coding retained_intron MGP_CASTEiJ_T0008156.1 MGP_CASTEiJ_G0006640.1 mouse_genomes_project 5 125278870 125280843 - Gm43409 lincRNA lincRNA MGP_CASTEiJ_T0014495.1 MGP_CASTEiJ_G0012658.1 mouse_genomes_project 5 61214712 61234968 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008136.1 MGP_CASTEiJ_G0006630.1 mouse_genomes_project 5 121467801 121470338 - 1700021F13Rik lincRNA lincRNA MGP_CASTEiJ_T0008137.1 MGP_CASTEiJ_G0006630.1 mouse_genomes_project 5 121467805 121470136 - 1700021F13Rik lincRNA lincRNA MGP_CASTEiJ_T0010390.1 MGP_CASTEiJ_G0008578.1 mouse_genomes_project 5 75095189 75095290 + Gm25374 miRNA miRNA MGP_CASTEiJ_T0072711.1 MGP_CASTEiJ_G0028824.1 mouse_genomes_project 5 89489159 89523070 - MGP_CASTEiJ_P0072711 Gc protein_coding protein_coding MGP_CASTEiJ_T0072712.1 MGP_CASTEiJ_G0028824.1 mouse_genomes_project 5 89493480 89500308 - MGP_CASTEiJ_P0072712 Gc protein_coding protein_coding MGP_CASTEiJ_T0007973.1 MGP_CASTEiJ_G0006514.1 mouse_genomes_project 5 75020743 75024422 - Gm28865 lincRNA lincRNA MGP_CASTEiJ_T0072684.1 MGP_CASTEiJ_G0028819.1 mouse_genomes_project 5 88639613 88710303 + MGP_CASTEiJ_P0072684 Rufy3 protein_coding protein_coding MGP_CASTEiJ_T0072685.1 MGP_CASTEiJ_G0028819.1 mouse_genomes_project 5 88639613 88719919 + MGP_CASTEiJ_P0072685 Rufy3 protein_coding protein_coding MGP_CASTEiJ_T0072686.1 MGP_CASTEiJ_G0028819.1 mouse_genomes_project 5 88640391 88715080 + MGP_CASTEiJ_P0072686 Rufy3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0072687.1 MGP_CASTEiJ_G0028819.1 mouse_genomes_project 5 88656849 88708535 + MGP_CASTEiJ_P0072687 Rufy3 protein_coding protein_coding MGP_CASTEiJ_T0072688.1 MGP_CASTEiJ_G0028819.1 mouse_genomes_project 5 88656872 88710304 + MGP_CASTEiJ_P0072688 Rufy3 protein_coding protein_coding MGP_CASTEiJ_T0072689.1 MGP_CASTEiJ_G0028819.1 mouse_genomes_project 5 88656913 88659251 + Rufy3 protein_coding retained_intron MGP_CASTEiJ_T0072690.1 MGP_CASTEiJ_G0028819.1 mouse_genomes_project 5 88656914 88685457 + Rufy3 protein_coding retained_intron MGP_CASTEiJ_T0072691.1 MGP_CASTEiJ_G0028819.1 mouse_genomes_project 5 88657128 88708536 + MGP_CASTEiJ_P0072691 Rufy3 protein_coding protein_coding MGP_CASTEiJ_T0072692.1 MGP_CASTEiJ_G0028819.1 mouse_genomes_project 5 88714297 88715929 + Rufy3 protein_coding retained_intron MGP_CASTEiJ_T0014380.1 MGP_CASTEiJ_G0012543.1 mouse_genomes_project 5 18292137 18292490 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075367.1 MGP_CASTEiJ_G0029328.1 mouse_genomes_project 5 140324916 140346519 - MGP_CASTEiJ_P0075367 Slc12a9 protein_coding protein_coding MGP_CASTEiJ_T0075368.1 MGP_CASTEiJ_G0029328.1 mouse_genomes_project 5 140332779 140333995 - Slc12a9 protein_coding retained_intron MGP_CASTEiJ_T0075369.1 MGP_CASTEiJ_G0029328.1 mouse_genomes_project 5 140342685 140346519 - Slc12a9 protein_coding retained_intron MGP_CASTEiJ_T0075370.1 MGP_CASTEiJ_G0029328.1 mouse_genomes_project 5 140345174 140345933 - MGP_CASTEiJ_P0075370 Slc12a9 protein_coding protein_coding MGP_CASTEiJ_T0072879.1 MGP_CASTEiJ_G0028864.1 mouse_genomes_project 5 92801667 92808496 - Ccdc158 protein_coding retained_intron MGP_CASTEiJ_T0072880.1 MGP_CASTEiJ_G0028864.1 mouse_genomes_project 5 92801966 92867096 - MGP_CASTEiJ_P0072880 Ccdc158 protein_coding protein_coding MGP_CASTEiJ_T0072881.1 MGP_CASTEiJ_G0028864.1 mouse_genomes_project 5 92843125 92867236 - MGP_CASTEiJ_P0072881 Ccdc158 protein_coding protein_coding MGP_CASTEiJ_T0072882.1 MGP_CASTEiJ_G0028864.1 mouse_genomes_project 5 92843125 92867242 - MGP_CASTEiJ_P0072882 Ccdc158 protein_coding protein_coding MGP_CASTEiJ_T0102354.1 MGP_CASTEiJ_G0039079.1 mouse_genomes_project 5 87312196 87313847 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099892.1 MGP_CASTEiJ_G0036805.1 mouse_genomes_project 5 79645120 79645227 + Gm24304 snRNA snRNA MGP_CASTEiJ_T0014451.1 MGP_CASTEiJ_G0012614.1 mouse_genomes_project 5 39680016 39681279 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076197.1 MGP_CASTEiJ_G0029499.1 mouse_genomes_project 5 153649621 153685878 + MGP_CASTEiJ_P0076197 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076198.1 MGP_CASTEiJ_G0029499.1 mouse_genomes_project 5 153656477 153685461 + MGP_CASTEiJ_P0076198 protein_coding protein_coding MGP_CASTEiJ_T0076199.1 MGP_CASTEiJ_G0029499.1 mouse_genomes_project 5 153674243 153685484 + MGP_CASTEiJ_P0076199 protein_coding protein_coding MGP_CASTEiJ_T0076200.1 MGP_CASTEiJ_G0029499.1 mouse_genomes_project 5 153685148 153685778 + protein_coding processed_transcript MGP_CASTEiJ_T0008029.1 MGP_CASTEiJ_G0006559.1 mouse_genomes_project 5 101703492 101714087 - lincRNA lincRNA MGP_CASTEiJ_T0072860.1 MGP_CASTEiJ_G0028860.1 mouse_genomes_project 5 92609674 92632349 - MGP_CASTEiJ_P0072860 Nup54 protein_coding protein_coding MGP_CASTEiJ_T0072861.1 MGP_CASTEiJ_G0028860.1 mouse_genomes_project 5 92610699 92612468 - Nup54 protein_coding retained_intron MGP_CASTEiJ_T0072862.1 MGP_CASTEiJ_G0028860.1 mouse_genomes_project 5 92618875 92620830 - Nup54 protein_coding retained_intron MGP_CASTEiJ_T0072863.1 MGP_CASTEiJ_G0028860.1 mouse_genomes_project 5 92621648 92631678 - Nup54 protein_coding processed_transcript MGP_CASTEiJ_T0072864.1 MGP_CASTEiJ_G0028860.1 mouse_genomes_project 5 92624056 92632221 - Nup54 protein_coding retained_intron MGP_CASTEiJ_T0072865.1 MGP_CASTEiJ_G0028860.1 mouse_genomes_project 5 92624327 92632244 - MGP_CASTEiJ_P0072865 Nup54 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072866.1 MGP_CASTEiJ_G0028860.1 mouse_genomes_project 5 92626937 92632253 - MGP_CASTEiJ_P0072866 Nup54 protein_coding protein_coding MGP_CASTEiJ_T0072867.1 MGP_CASTEiJ_G0028860.1 mouse_genomes_project 5 92626945 92631887 - MGP_CASTEiJ_P0072867 Nup54 protein_coding protein_coding MGP_CASTEiJ_T0074173.1 MGP_CASTEiJ_G0029129.1 mouse_genomes_project 5 123322434 123346359 - MGP_CASTEiJ_P0074173 Erp29 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074176.1 MGP_CASTEiJ_G0029129.1 mouse_genomes_project 5 123334686 123346378 - MGP_CASTEiJ_P0074176 Erp29 protein_coding protein_coding MGP_CASTEiJ_T0074177.1 MGP_CASTEiJ_G0029129.1 mouse_genomes_project 5 123338624 123346368 - MGP_CASTEiJ_P0074177 Erp29 protein_coding protein_coding MGP_CASTEiJ_T0074178.1 MGP_CASTEiJ_G0029129.1 mouse_genomes_project 5 123339109 123346220 - MGP_CASTEiJ_P0074178 Erp29 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0004742.1 MGP_CASTEiJ_G0004087.1 mouse_genomes_project 5 143630644 143631855 + antisense antisense MGP_CASTEiJ_T0001416.1 MGP_CASTEiJ_G0001345.1 mouse_genomes_project 5 19953346 19958087 - TEC TEC MGP_CASTEiJ_T0014550.1 MGP_CASTEiJ_G0012713.1 mouse_genomes_project 5 88503125 88503674 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099903.1 MGP_CASTEiJ_G0036816.1 mouse_genomes_project 5 100445753 100445913 - Gm23173 snRNA snRNA MGP_CASTEiJ_T0004688.1 MGP_CASTEiJ_G0004050.1 mouse_genomes_project 5 125064436 125072217 - Gm2479 antisense antisense MGP_CASTEiJ_T0004689.1 MGP_CASTEiJ_G0004050.1 mouse_genomes_project 5 125064601 125070023 - Gm2479 antisense antisense MGP_CASTEiJ_T0072693.1 MGP_CASTEiJ_G0028820.1 mouse_genomes_project 5 88726169 88745895 - MGP_CASTEiJ_P0072693 Grsf1 protein_coding protein_coding MGP_CASTEiJ_T0072694.1 MGP_CASTEiJ_G0028820.1 mouse_genomes_project 5 88728293 88746569 - MGP_CASTEiJ_P0072694 Grsf1 protein_coding protein_coding MGP_CASTEiJ_T0072695.1 MGP_CASTEiJ_G0028820.1 mouse_genomes_project 5 88731377 88741796 - Grsf1 protein_coding retained_intron MGP_CASTEiJ_T0072696.1 MGP_CASTEiJ_G0028820.1 mouse_genomes_project 5 88744097 88745596 - Grsf1 protein_coding processed_transcript MGP_CASTEiJ_T0001674.1 MGP_CASTEiJ_G0001597.1 mouse_genomes_project 5 102090853 102091941 - TEC TEC MGP_CASTEiJ_T0008277.1 MGP_CASTEiJ_G0006724.1 mouse_genomes_project 5 156233953 156241148 + Gm43129 lincRNA lincRNA MGP_CASTEiJ_T0001453.1 MGP_CASTEiJ_G0001379.1 mouse_genomes_project 5 32931216 32932457 - TEC TEC MGP_CASTEiJ_T0070848.1 MGP_CASTEiJ_G0028497.1 mouse_genomes_project 5 27553016 27595705 + MGP_CASTEiJ_P0070848 Drc1 protein_coding protein_coding MGP_CASTEiJ_T0070849.1 MGP_CASTEiJ_G0028497.1 mouse_genomes_project 5 27566303 27567289 + Drc1 protein_coding processed_transcript MGP_CASTEiJ_T0070850.1 MGP_CASTEiJ_G0028497.1 mouse_genomes_project 5 27570239 27581093 + Drc1 protein_coding processed_transcript MGP_CASTEiJ_T0070851.1 MGP_CASTEiJ_G0028497.1 mouse_genomes_project 5 27578186 27581678 + Drc1 protein_coding processed_transcript MGP_CASTEiJ_T0008221.1 MGP_CASTEiJ_G0006683.1 mouse_genomes_project 5 147048440 147049249 + Gm43397 lincRNA lincRNA MGP_CASTEiJ_T0075885.1 MGP_CASTEiJ_G0029436.1 mouse_genomes_project 5 147277184 147280353 + MGP_CASTEiJ_P0075885 protein_coding protein_coding MGP_CASTEiJ_T0075886.1 MGP_CASTEiJ_G0029436.1 mouse_genomes_project 5 147277200 147279297 + protein_coding retained_intron MGP_CASTEiJ_T0075887.1 MGP_CASTEiJ_G0029436.1 mouse_genomes_project 5 147277478 147280348 + protein_coding processed_transcript MGP_CASTEiJ_T0076015.1 MGP_CASTEiJ_G0029462.1 mouse_genomes_project 5 149001639 149016765 + MGP_CASTEiJ_P0076015 Cpsf4 protein_coding protein_coding MGP_CASTEiJ_T0076016.1 MGP_CASTEiJ_G0029462.1 mouse_genomes_project 5 149001650 149016765 + MGP_CASTEiJ_P0076016 Cpsf4 protein_coding protein_coding MGP_CASTEiJ_T0076017.1 MGP_CASTEiJ_G0029462.1 mouse_genomes_project 5 149001673 149016764 + MGP_CASTEiJ_P0076017 Cpsf4 protein_coding protein_coding MGP_CASTEiJ_T0076018.1 MGP_CASTEiJ_G0029462.1 mouse_genomes_project 5 149001680 149016477 + MGP_CASTEiJ_P0076018 Cpsf4 protein_coding protein_coding MGP_CASTEiJ_T0076019.1 MGP_CASTEiJ_G0029462.1 mouse_genomes_project 5 149001694 149015959 + MGP_CASTEiJ_P0076019 Cpsf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076020.1 MGP_CASTEiJ_G0029462.1 mouse_genomes_project 5 149001881 149016080 + MGP_CASTEiJ_P0076020 Cpsf4 protein_coding protein_coding MGP_CASTEiJ_T0076021.1 MGP_CASTEiJ_G0029462.1 mouse_genomes_project 5 149005206 149016765 + Cpsf4 protein_coding retained_intron MGP_CASTEiJ_T0070487.1 MGP_CASTEiJ_G0028428.1 mouse_genomes_project 5 18692453 18710390 + MGP_CASTEiJ_P0070487 Armc10 protein_coding protein_coding MGP_CASTEiJ_T0070488.1 MGP_CASTEiJ_G0028428.1 mouse_genomes_project 5 18692591 18695236 + Armc10 protein_coding processed_transcript MGP_CASTEiJ_T0070489.1 MGP_CASTEiJ_G0028428.1 mouse_genomes_project 5 18692627 18710305 + MGP_CASTEiJ_P0070489 Armc10 protein_coding protein_coding MGP_CASTEiJ_T0070490.1 MGP_CASTEiJ_G0028428.1 mouse_genomes_project 5 18695085 18698538 + Armc10 protein_coding retained_intron MGP_CASTEiJ_T0008158.1 MGP_CASTEiJ_G0006642.1 mouse_genomes_project 5 126175771 126192696 - Gm43661 lincRNA lincRNA MGP_CASTEiJ_T0076295.1 MGP_CASTEiJ_G0029513.1 mouse_genomes_project 5 155613624 155772207 - MGP_CASTEiJ_P0076295 Stard13 protein_coding protein_coding MGP_CASTEiJ_T0076296.1 MGP_CASTEiJ_G0029513.1 mouse_genomes_project 5 155615778 155772107 - MGP_CASTEiJ_P0076296 Stard13 protein_coding protein_coding MGP_CASTEiJ_T0076297.1 MGP_CASTEiJ_G0029513.1 mouse_genomes_project 5 155640643 155772213 - Stard13 protein_coding processed_transcript MGP_CASTEiJ_T0076298.1 MGP_CASTEiJ_G0029513.1 mouse_genomes_project 5 155640744 155666486 - Stard13 protein_coding processed_transcript MGP_CASTEiJ_T0076300.1 MGP_CASTEiJ_G0029513.1 mouse_genomes_project 5 155640747 155827225 - MGP_CASTEiJ_P0076300 Stard13 protein_coding protein_coding MGP_CASTEiJ_T0076301.1 MGP_CASTEiJ_G0029513.1 mouse_genomes_project 5 155640794 155672853 - Stard13 protein_coding processed_transcript MGP_CASTEiJ_T0076302.1 MGP_CASTEiJ_G0029513.1 mouse_genomes_project 5 155648197 155772163 - Stard13 protein_coding retained_intron MGP_CASTEiJ_T0076303.1 MGP_CASTEiJ_G0029513.1 mouse_genomes_project 5 155650241 155827287 - MGP_CASTEiJ_P0076303 Stard13 protein_coding protein_coding MGP_CASTEiJ_T0076304.1 MGP_CASTEiJ_G0029513.1 mouse_genomes_project 5 155672526 155685798 - Stard13 protein_coding processed_transcript MGP_CASTEiJ_T0001499.1 MGP_CASTEiJ_G0001425.1 mouse_genomes_project 5 46403303 46407044 - TEC TEC MGP_CASTEiJ_T0075909.1 MGP_CASTEiJ_G0029442.1 mouse_genomes_project 5 147608131 147632909 + Pms2 protein_coding retained_intron MGP_CASTEiJ_T0075910.1 MGP_CASTEiJ_G0029442.1 mouse_genomes_project 5 147608131 147632909 + Pms2 protein_coding processed_transcript MGP_CASTEiJ_T0075911.1 MGP_CASTEiJ_G0029442.1 mouse_genomes_project 5 147608131 147632909 + MGP_CASTEiJ_P0075911 Pms2 protein_coding protein_coding MGP_CASTEiJ_T0075912.1 MGP_CASTEiJ_G0029442.1 mouse_genomes_project 5 147608157 147630143 + Pms2 protein_coding processed_transcript MGP_CASTEiJ_T0075913.1 MGP_CASTEiJ_G0029442.1 mouse_genomes_project 5 147608157 147630388 + Pms2 protein_coding processed_transcript MGP_CASTEiJ_T0075914.1 MGP_CASTEiJ_G0029442.1 mouse_genomes_project 5 147608166 147616541 + Pms2 protein_coding processed_transcript MGP_CASTEiJ_T0075915.1 MGP_CASTEiJ_G0029442.1 mouse_genomes_project 5 147608171 147612933 + Pms2 protein_coding processed_transcript MGP_CASTEiJ_T0075916.1 MGP_CASTEiJ_G0029442.1 mouse_genomes_project 5 147608192 147625828 + Pms2 protein_coding retained_intron MGP_CASTEiJ_T0075917.1 MGP_CASTEiJ_G0029442.1 mouse_genomes_project 5 147608192 147612468 + Pms2 protein_coding retained_intron MGP_CASTEiJ_T0075918.1 MGP_CASTEiJ_G0029442.1 mouse_genomes_project 5 147608224 147630097 + MGP_CASTEiJ_P0075918 Pms2 protein_coding protein_coding MGP_CASTEiJ_T0075919.1 MGP_CASTEiJ_G0029442.1 mouse_genomes_project 5 147608328 147611636 + Pms2 protein_coding processed_transcript MGP_CASTEiJ_T0075920.1 MGP_CASTEiJ_G0029442.1 mouse_genomes_project 5 147611493 147612089 + Pms2 protein_coding retained_intron MGP_CASTEiJ_T0075921.1 MGP_CASTEiJ_G0029442.1 mouse_genomes_project 5 147618456 147624456 + MGP_CASTEiJ_P0075921 Pms2 protein_coding protein_coding MGP_CASTEiJ_T0014419.1 MGP_CASTEiJ_G0012582.1 mouse_genomes_project 5 26951803 26952182 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004667.1 MGP_CASTEiJ_G0004035.1 mouse_genomes_project 5 119563637 119568398 + Gm9754 antisense antisense MGP_CASTEiJ_T0007849.1 MGP_CASTEiJ_G0006426.1 mouse_genomes_project 5 15433977 15442453 - Gm43030 lincRNA lincRNA MGP_CASTEiJ_T0001559.1 MGP_CASTEiJ_G0001484.1 mouse_genomes_project 5 56467334 56471981 - TEC TEC MGP_CASTEiJ_T0010420.1 MGP_CASTEiJ_G0008608.1 mouse_genomes_project 5 137112778 137112847 + Mir3965 miRNA miRNA MGP_CASTEiJ_T0071199.1 MGP_CASTEiJ_G0028549.1 mouse_genomes_project 5 30534537 30600994 + MGP_CASTEiJ_P0071199 Slc5a1 protein_coding protein_coding MGP_CASTEiJ_T0101101.1 MGP_CASTEiJ_G0038014.1 mouse_genomes_project 5 5246497 5246641 + Gm23993 snoRNA snoRNA MGP_CASTEiJ_T0007988.1 MGP_CASTEiJ_G0006525.1 mouse_genomes_project 5 85487312 85489298 + Gm43567 lincRNA lincRNA MGP_CASTEiJ_T0071317.1 MGP_CASTEiJ_G0028568.1 mouse_genomes_project 5 31643888 31645341 - Mxd4 protein_coding processed_transcript MGP_CASTEiJ_T0071318.1 MGP_CASTEiJ_G0028568.1 mouse_genomes_project 5 31643892 31659439 - MGP_CASTEiJ_P0071318 Mxd4 protein_coding protein_coding MGP_CASTEiJ_T0071319.1 MGP_CASTEiJ_G0028568.1 mouse_genomes_project 5 31648314 31659449 - MGP_CASTEiJ_P0071319 Mxd4 protein_coding protein_coding MGP_CASTEiJ_T0071320.1 MGP_CASTEiJ_G0028568.1 mouse_genomes_project 5 31651468 31656104 - Mxd4 protein_coding retained_intron MGP_CASTEiJ_T0076173.1 MGP_CASTEiJ_G0029496.1 mouse_genomes_project 5 153226432 153342938 - MGP_CASTEiJ_P0076173 Gm42791 protein_coding protein_coding MGP_CASTEiJ_T0076176.1 MGP_CASTEiJ_G0029496.1 mouse_genomes_project 5 153326903 153327557 - Gm42791 protein_coding processed_transcript MGP_CASTEiJ_T0007983.1 MGP_CASTEiJ_G0006523.1 mouse_genomes_project 5 81723274 81725577 - 1700031L13Rik lincRNA lincRNA MGP_CASTEiJ_T0007984.1 MGP_CASTEiJ_G0006523.1 mouse_genomes_project 5 81723293 81725580 - 1700031L13Rik lincRNA lincRNA MGP_CASTEiJ_T0007985.1 MGP_CASTEiJ_G0006523.1 mouse_genomes_project 5 81723303 81724212 - 1700031L13Rik lincRNA lincRNA MGP_CASTEiJ_T0007986.1 MGP_CASTEiJ_G0006523.1 mouse_genomes_project 5 81723552 81724204 - 1700031L13Rik lincRNA lincRNA MGP_CASTEiJ_T0070546.1 MGP_CASTEiJ_G0028439.1 mouse_genomes_project 5 20565604 20680310 - MGP_CASTEiJ_P0070546 Srpk2 protein_coding protein_coding MGP_CASTEiJ_T0070547.1 MGP_CASTEiJ_G0028439.1 mouse_genomes_project 5 20567784 20745569 - MGP_CASTEiJ_P0070547 Srpk2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070548.1 MGP_CASTEiJ_G0028439.1 mouse_genomes_project 5 20588340 20604645 - Srpk2 protein_coding processed_transcript MGP_CASTEiJ_T0070549.1 MGP_CASTEiJ_G0028439.1 mouse_genomes_project 5 20590558 20745135 - MGP_CASTEiJ_P0070549 Srpk2 protein_coding protein_coding MGP_CASTEiJ_T0070550.1 MGP_CASTEiJ_G0028439.1 mouse_genomes_project 5 20607070 20745088 - Srpk2 protein_coding retained_intron MGP_CASTEiJ_T0070551.1 MGP_CASTEiJ_G0028439.1 mouse_genomes_project 5 20609833 20612316 - Srpk2 protein_coding retained_intron MGP_CASTEiJ_T0070552.1 MGP_CASTEiJ_G0028439.1 mouse_genomes_project 5 20610234 20753627 - MGP_CASTEiJ_P0070552 Srpk2 protein_coding protein_coding MGP_CASTEiJ_T0070553.1 MGP_CASTEiJ_G0028439.1 mouse_genomes_project 5 20629528 20745476 - MGP_CASTEiJ_P0070553 Srpk2 protein_coding protein_coding MGP_CASTEiJ_T0070554.1 MGP_CASTEiJ_G0028439.1 mouse_genomes_project 5 20629633 20753610 - MGP_CASTEiJ_P0070554 Srpk2 protein_coding protein_coding MGP_CASTEiJ_T0070555.1 MGP_CASTEiJ_G0028439.1 mouse_genomes_project 5 20678498 20680331 - Srpk2 protein_coding retained_intron MGP_CASTEiJ_T0074768.1 MGP_CASTEiJ_G0029222.1 mouse_genomes_project 5 131000117 131003355 + MGP_CASTEiJ_P0074768 Fzd10 protein_coding protein_coding MGP_CASTEiJ_T0001626.1 MGP_CASTEiJ_G0001549.1 mouse_genomes_project 5 72273144 72274022 + TEC TEC MGP_CASTEiJ_T0008220.1 MGP_CASTEiJ_G0006682.1 mouse_genomes_project 5 146977298 146979664 + BC030343 lincRNA lincRNA MGP_CASTEiJ_T0072497.1 MGP_CASTEiJ_G0028762.1 mouse_genomes_project 5 76366626 76376823 - MGP_CASTEiJ_P0072497 Hopx protein_coding protein_coding MGP_CASTEiJ_T0072498.1 MGP_CASTEiJ_G0028762.1 mouse_genomes_project 5 76366626 76399102 - MGP_CASTEiJ_P0072498 Hopx protein_coding protein_coding MGP_CASTEiJ_T0072499.1 MGP_CASTEiJ_G0028762.1 mouse_genomes_project 5 76366626 76376847 - MGP_CASTEiJ_P0072499 Hopx protein_coding protein_coding MGP_CASTEiJ_T0001521.1 MGP_CASTEiJ_G0001446.1 mouse_genomes_project 5 47115395 47117873 - TEC TEC MGP_CASTEiJ_T0014427.1 MGP_CASTEiJ_G0012590.1 mouse_genomes_project 5 29837771 29838097 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075111.1 MGP_CASTEiJ_G0029279.1 mouse_genomes_project 5 138019320 138033991 + MGP_CASTEiJ_P0075111 Bcl7b protein_coding protein_coding MGP_CASTEiJ_T0075112.1 MGP_CASTEiJ_G0029279.1 mouse_genomes_project 5 138019426 138024486 + MGP_CASTEiJ_P0075112 Bcl7b protein_coding protein_coding MGP_CASTEiJ_T0075113.1 MGP_CASTEiJ_G0029279.1 mouse_genomes_project 5 138019449 138033967 + MGP_CASTEiJ_P0075113 Bcl7b protein_coding protein_coding MGP_CASTEiJ_T0075114.1 MGP_CASTEiJ_G0029279.1 mouse_genomes_project 5 138019482 138032731 + MGP_CASTEiJ_P0075114 Bcl7b protein_coding protein_coding MGP_CASTEiJ_T0075115.1 MGP_CASTEiJ_G0029279.1 mouse_genomes_project 5 138031717 138033261 + Bcl7b protein_coding retained_intron MGP_CASTEiJ_T0001589.1 MGP_CASTEiJ_G0001513.1 mouse_genomes_project 5 64814931 64819245 - TEC TEC MGP_CASTEiJ_T0075435.1 MGP_CASTEiJ_G0029339.1 mouse_genomes_project 5 140659624 140677303 - MGP_CASTEiJ_P0075435 Fbxo24 protein_coding protein_coding MGP_CASTEiJ_T0075436.1 MGP_CASTEiJ_G0029339.1 mouse_genomes_project 5 140659624 140673302 - MGP_CASTEiJ_P0075436 Fbxo24 protein_coding protein_coding MGP_CASTEiJ_T0075437.1 MGP_CASTEiJ_G0029339.1 mouse_genomes_project 5 140659627 140677257 - MGP_CASTEiJ_P0075437 Fbxo24 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076102.1 MGP_CASTEiJ_G0029484.1 mouse_genomes_project 5 151460068 151466010 + MGP_CASTEiJ_P0076102 Pdx1 protein_coding protein_coding MGP_CASTEiJ_T0071237.1 MGP_CASTEiJ_G0028557.1 mouse_genomes_project 5 31092078 31112188 - MGP_CASTEiJ_P0071237 Slbp protein_coding protein_coding MGP_CASTEiJ_T0071238.1 MGP_CASTEiJ_G0028557.1 mouse_genomes_project 5 31098341 31100035 - Slbp protein_coding retained_intron MGP_CASTEiJ_T0071239.1 MGP_CASTEiJ_G0028557.1 mouse_genomes_project 5 31098663 31112096 - MGP_CASTEiJ_P0071239 Slbp protein_coding unknown_likely_coding MGP_CASTEiJ_T0071240.1 MGP_CASTEiJ_G0028557.1 mouse_genomes_project 5 31099813 31112181 - Slbp protein_coding retained_intron MGP_CASTEiJ_T0071241.1 MGP_CASTEiJ_G0028557.1 mouse_genomes_project 5 31101095 31112143 - MGP_CASTEiJ_P0071241 Slbp protein_coding protein_coding MGP_CASTEiJ_T0071242.1 MGP_CASTEiJ_G0028557.1 mouse_genomes_project 5 31105619 31112139 - MGP_CASTEiJ_P0071242 Slbp protein_coding protein_coding MGP_CASTEiJ_T0071243.1 MGP_CASTEiJ_G0028557.1 mouse_genomes_project 5 31107331 31112196 - Slbp protein_coding retained_intron MGP_CASTEiJ_T0071244.1 MGP_CASTEiJ_G0028557.1 mouse_genomes_project 5 31111463 31112144 - Slbp protein_coding retained_intron MGP_CASTEiJ_T0071514.1 MGP_CASTEiJ_G0028598.1 mouse_genomes_project 5 34090694 34094291 + MGP_CASTEiJ_P0071514 Ccdc96 protein_coding protein_coding MGP_CASTEiJ_T0001832.1 MGP_CASTEiJ_G0001753.1 mouse_genomes_project 5 147112448 147114612 - TEC pseudogene MGP_CASTEiJ_T0074897.1 MGP_CASTEiJ_G0029248.1 mouse_genomes_project 5 132767367 132778794 - MGP_CASTEiJ_P0074897 Sbds protein_coding protein_coding MGP_CASTEiJ_T0074898.1 MGP_CASTEiJ_G0029248.1 mouse_genomes_project 5 132768037 132778669 - MGP_CASTEiJ_P0074898 Sbds protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074899.1 MGP_CASTEiJ_G0029248.1 mouse_genomes_project 5 132769499 132777350 - MGP_CASTEiJ_P0074899 Sbds protein_coding protein_coding MGP_CASTEiJ_T0074900.1 MGP_CASTEiJ_G0029248.1 mouse_genomes_project 5 132770049 132778756 - Sbds protein_coding processed_transcript MGP_CASTEiJ_T0074901.1 MGP_CASTEiJ_G0029248.1 mouse_genomes_project 5 132774149 132778742 - Sbds protein_coding processed_transcript MGP_CASTEiJ_T0072703.1 MGP_CASTEiJ_G0028823.1 mouse_genomes_project 5 88966927 88969448 + Slc4a4 protein_coding processed_transcript MGP_CASTEiJ_T0072704.1 MGP_CASTEiJ_G0028823.1 mouse_genomes_project 5 88966963 89319072 + MGP_CASTEiJ_P0072704 Slc4a4 protein_coding protein_coding MGP_CASTEiJ_T0072705.1 MGP_CASTEiJ_G0028823.1 mouse_genomes_project 5 88966965 89320002 + MGP_CASTEiJ_P0072705 Slc4a4 protein_coding protein_coding MGP_CASTEiJ_T0072706.1 MGP_CASTEiJ_G0028823.1 mouse_genomes_project 5 89019872 89040157 + MGP_CASTEiJ_P0072706 Slc4a4 protein_coding protein_coding MGP_CASTEiJ_T0072707.1 MGP_CASTEiJ_G0028823.1 mouse_genomes_project 5 89020090 89319822 + MGP_CASTEiJ_P0072707 Slc4a4 protein_coding protein_coding MGP_CASTEiJ_T0072708.1 MGP_CASTEiJ_G0028823.1 mouse_genomes_project 5 89107569 89319066 + MGP_CASTEiJ_P0072708 Slc4a4 protein_coding protein_coding MGP_CASTEiJ_T0072709.1 MGP_CASTEiJ_G0028823.1 mouse_genomes_project 5 89107680 89121938 + MGP_CASTEiJ_P0072709 Slc4a4 protein_coding protein_coding MGP_CASTEiJ_T0072710.1 MGP_CASTEiJ_G0028823.1 mouse_genomes_project 5 89107695 89198661 + MGP_CASTEiJ_P0072710 Slc4a4 protein_coding protein_coding MGP_CASTEiJ_T0001791.1 MGP_CASTEiJ_G0001713.1 mouse_genomes_project 5 134346770 134347904 - TEC TEC MGP_CASTEiJ_T0001551.1 MGP_CASTEiJ_G0001476.1 mouse_genomes_project 5 56202034 56203389 + TEC TEC MGP_CASTEiJ_T0014561.1 MGP_CASTEiJ_G0012724.1 mouse_genomes_project 5 93221093 93221673 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014452.1 MGP_CASTEiJ_G0012615.1 mouse_genomes_project 5 40243093 40243534 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070128.1 MGP_CASTEiJ_G0028369.1 mouse_genomes_project 5 154809 392706 + MGP_CASTEiJ_P0070128 protein_coding protein_coding MGP_CASTEiJ_T0070129.1 MGP_CASTEiJ_G0028369.1 mouse_genomes_project 5 335746 337973 + protein_coding retained_intron MGP_CASTEiJ_T0073833.1 MGP_CASTEiJ_G0029060.1 mouse_genomes_project 5 116306951 116307558 - MGP_CASTEiJ_P0073833 Gm10401 protein_coding protein_coding MGP_CASTEiJ_T0001721.1 MGP_CASTEiJ_G0001644.1 mouse_genomes_project 5 118560107 118562789 + TEC TEC MGP_CASTEiJ_T0072494.1 MGP_CASTEiJ_G0028761.1 mouse_genomes_project 5 76286922 76335168 + MGP_CASTEiJ_P0072494 Thegl protein_coding protein_coding MGP_CASTEiJ_T0072495.1 MGP_CASTEiJ_G0028761.1 mouse_genomes_project 5 76286922 76335175 + MGP_CASTEiJ_P0072495 Thegl protein_coding protein_coding MGP_CASTEiJ_T0072496.1 MGP_CASTEiJ_G0028761.1 mouse_genomes_project 5 76308136 76318564 + MGP_CASTEiJ_P0072496 Thegl protein_coding protein_coding MGP_CASTEiJ_T0010427.1 MGP_CASTEiJ_G0008615.1 mouse_genomes_project 5 139994611 139994720 + Mir702 miRNA miRNA MGP_CASTEiJ_T0072597.1 MGP_CASTEiJ_G0028784.1 mouse_genomes_project 5 86788604 86800148 - MGP_CASTEiJ_P0072597 Ugt2b1 protein_coding protein_coding MGP_CASTEiJ_T0014500.1 MGP_CASTEiJ_G0012663.1 mouse_genomes_project 5 62744761 62745704 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014425.1 MGP_CASTEiJ_G0012588.1 mouse_genomes_project 5 29526913 29527496 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011276.1 MGP_CASTEiJ_G0009464.1 mouse_genomes_project 5 113163558 113163919 - Gm27998 misc_RNA misc_RNA MGP_CASTEiJ_T0008130.1 MGP_CASTEiJ_G0006624.1 mouse_genomes_project 5 120709773 120721315 + lincRNA lincRNA MGP_CASTEiJ_T0001383.1 MGP_CASTEiJ_G0001312.1 mouse_genomes_project 5 4247224 4249535 - TEC TEC MGP_CASTEiJ_T0010435.1 MGP_CASTEiJ_G0008623.1 mouse_genomes_project 5 142722830 142722926 - Mir339 miRNA miRNA MGP_CASTEiJ_T0014523.1 MGP_CASTEiJ_G0012686.1 mouse_genomes_project 5 74472643 74474523 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099927.1 MGP_CASTEiJ_G0036840.1 mouse_genomes_project 5 139034202 139034374 - Gm22214 snRNA snRNA MGP_CASTEiJ_T0075195.1 MGP_CASTEiJ_G0029298.1 mouse_genomes_project 5 138876180 138892078 - MGP_CASTEiJ_P0075195 Ssc4d protein_coding protein_coding MGP_CASTEiJ_T0075196.1 MGP_CASTEiJ_G0029298.1 mouse_genomes_project 5 138876192 138892044 - MGP_CASTEiJ_P0075196 Ssc4d protein_coding protein_coding MGP_CASTEiJ_T0075197.1 MGP_CASTEiJ_G0029298.1 mouse_genomes_project 5 138876193 138878288 - MGP_CASTEiJ_P0075197 Ssc4d protein_coding protein_coding MGP_CASTEiJ_T0075198.1 MGP_CASTEiJ_G0029298.1 mouse_genomes_project 5 138876790 138878236 - MGP_CASTEiJ_P0075198 Ssc4d protein_coding protein_coding MGP_CASTEiJ_T0075199.1 MGP_CASTEiJ_G0029298.1 mouse_genomes_project 5 138879160 138882367 - MGP_CASTEiJ_P0075199 Ssc4d protein_coding protein_coding MGP_CASTEiJ_T0075200.1 MGP_CASTEiJ_G0029298.1 mouse_genomes_project 5 138879370 138884408 - MGP_CASTEiJ_P0075200 Ssc4d protein_coding protein_coding MGP_CASTEiJ_T0075201.1 MGP_CASTEiJ_G0029298.1 mouse_genomes_project 5 138882631 138891987 - MGP_CASTEiJ_P0075201 Ssc4d protein_coding protein_coding MGP_CASTEiJ_T0073874.1 MGP_CASTEiJ_G0029069.1 mouse_genomes_project 5 116555482 116562264 + MGP_CASTEiJ_P0073874 Srsf9 protein_coding protein_coding MGP_CASTEiJ_T0073875.1 MGP_CASTEiJ_G0029069.1 mouse_genomes_project 5 116556805 116562193 + Srsf9 protein_coding processed_transcript MGP_CASTEiJ_T0073876.1 MGP_CASTEiJ_G0029069.1 mouse_genomes_project 5 116557781 116561831 + Srsf9 protein_coding processed_transcript MGP_CASTEiJ_T0073877.1 MGP_CASTEiJ_G0029069.1 mouse_genomes_project 5 116559762 116562193 + MGP_CASTEiJ_P0073877 Srsf9 protein_coding protein_coding MGP_CASTEiJ_T0071057.1 MGP_CASTEiJ_G0028529.1 mouse_genomes_project 5 28536666 28538175 + Krtcap3 protein_coding retained_intron MGP_CASTEiJ_T0071058.1 MGP_CASTEiJ_G0028529.1 mouse_genomes_project 5 28536681 28538175 + MGP_CASTEiJ_P0071058 Krtcap3 protein_coding protein_coding MGP_CASTEiJ_T0071059.1 MGP_CASTEiJ_G0028529.1 mouse_genomes_project 5 28536691 28537869 + Krtcap3 protein_coding retained_intron MGP_CASTEiJ_T0071060.1 MGP_CASTEiJ_G0028529.1 mouse_genomes_project 5 28536697 28538180 + MGP_CASTEiJ_P0071060 Krtcap3 protein_coding protein_coding MGP_CASTEiJ_T0071061.1 MGP_CASTEiJ_G0028529.1 mouse_genomes_project 5 28536700 28538175 + MGP_CASTEiJ_P0071061 Krtcap3 protein_coding protein_coding MGP_CASTEiJ_T0071062.1 MGP_CASTEiJ_G0028529.1 mouse_genomes_project 5 28536737 28537676 + Krtcap3 protein_coding retained_intron MGP_CASTEiJ_T0071063.1 MGP_CASTEiJ_G0028529.1 mouse_genomes_project 5 28536902 28537974 + Krtcap3 protein_coding retained_intron MGP_CASTEiJ_T0071064.1 MGP_CASTEiJ_G0028529.1 mouse_genomes_project 5 28537313 28538177 + Krtcap3 protein_coding retained_intron MGP_CASTEiJ_T0071065.1 MGP_CASTEiJ_G0028529.1 mouse_genomes_project 5 28537457 28538175 + Krtcap3 protein_coding retained_intron MGP_CASTEiJ_T0071066.1 MGP_CASTEiJ_G0028529.1 mouse_genomes_project 5 28537532 28538175 + Krtcap3 protein_coding retained_intron MGP_CASTEiJ_T0075039.1 MGP_CASTEiJ_G0029265.1 mouse_genomes_project 5 137475469 137509063 - MGP_CASTEiJ_P0075039 Limk1 protein_coding protein_coding MGP_CASTEiJ_T0075040.1 MGP_CASTEiJ_G0029265.1 mouse_genomes_project 5 137475470 137498731 - MGP_CASTEiJ_P0075040 Limk1 protein_coding protein_coding MGP_CASTEiJ_T0075041.1 MGP_CASTEiJ_G0029265.1 mouse_genomes_project 5 137475629 137498703 - MGP_CASTEiJ_P0075041 Limk1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075042.1 MGP_CASTEiJ_G0029265.1 mouse_genomes_project 5 137479581 137484732 - MGP_CASTEiJ_P0075042 Limk1 protein_coding protein_coding MGP_CASTEiJ_T0075043.1 MGP_CASTEiJ_G0029265.1 mouse_genomes_project 5 137484470 137488928 - Limk1 protein_coding retained_intron MGP_CASTEiJ_T0075044.1 MGP_CASTEiJ_G0029265.1 mouse_genomes_project 5 137488681 137509039 - Limk1 protein_coding retained_intron MGP_CASTEiJ_T0007913.1 MGP_CASTEiJ_G0006464.1 mouse_genomes_project 5 40741118 40752964 - Gm43700 lincRNA lincRNA MGP_CASTEiJ_T0075417.1 MGP_CASTEiJ_G0029337.1 mouse_genomes_project 5 140642933 140646491 - MGP_CASTEiJ_P0075417 Mospd3 protein_coding protein_coding MGP_CASTEiJ_T0075418.1 MGP_CASTEiJ_G0029337.1 mouse_genomes_project 5 140642935 140646828 - MGP_CASTEiJ_P0075418 Mospd3 protein_coding protein_coding MGP_CASTEiJ_T0075419.1 MGP_CASTEiJ_G0029337.1 mouse_genomes_project 5 140643348 140646583 - Mospd3 protein_coding processed_transcript MGP_CASTEiJ_T0075420.1 MGP_CASTEiJ_G0029337.1 mouse_genomes_project 5 140643400 140646842 - MGP_CASTEiJ_P0075420 Mospd3 protein_coding protein_coding MGP_CASTEiJ_T0075421.1 MGP_CASTEiJ_G0029337.1 mouse_genomes_project 5 140645816 140646507 - MGP_CASTEiJ_P0075421 Mospd3 protein_coding protein_coding MGP_CASTEiJ_T0075422.1 MGP_CASTEiJ_G0029337.1 mouse_genomes_project 5 140645865 140646474 - Mospd3 protein_coding retained_intron MGP_CASTEiJ_T0075250.1 MGP_CASTEiJ_G0029307.1 mouse_genomes_project 5 139091486 139113278 - MGP_CASTEiJ_P0075250 Orai2 protein_coding protein_coding MGP_CASTEiJ_T0075251.1 MGP_CASTEiJ_G0029307.1 mouse_genomes_project 5 139108909 139113283 - Orai2 protein_coding retained_intron MGP_CASTEiJ_T0071505.1 MGP_CASTEiJ_G0028594.1 mouse_genomes_project 5 33589597 33982753 - MGP_CASTEiJ_P0071505 Sorcs2 protein_coding protein_coding MGP_CASTEiJ_T0071506.1 MGP_CASTEiJ_G0028594.1 mouse_genomes_project 5 33589605 33681039 - MGP_CASTEiJ_P0071506 Sorcs2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071507.1 MGP_CASTEiJ_G0028594.1 mouse_genomes_project 5 33638609 33982736 - Sorcs2 protein_coding retained_intron MGP_CASTEiJ_T0071508.1 MGP_CASTEiJ_G0028594.1 mouse_genomes_project 5 33642893 33847322 - MGP_CASTEiJ_P0071508 Sorcs2 protein_coding protein_coding MGP_CASTEiJ_T0071509.1 MGP_CASTEiJ_G0028594.1 mouse_genomes_project 5 33729908 33982768 - MGP_CASTEiJ_P0071509 Sorcs2 protein_coding protein_coding MGP_CASTEiJ_T0071510.1 MGP_CASTEiJ_G0028594.1 mouse_genomes_project 5 33730955 33948750 - Sorcs2 protein_coding processed_transcript MGP_CASTEiJ_T0076162.1 MGP_CASTEiJ_G0029494.1 mouse_genomes_project 5 152790661 152838615 - MGP_CASTEiJ_P0076162 Ubl3 protein_coding protein_coding MGP_CASTEiJ_T0076163.1 MGP_CASTEiJ_G0029494.1 mouse_genomes_project 5 152791155 152838742 - MGP_CASTEiJ_P0076163 Ubl3 protein_coding protein_coding MGP_CASTEiJ_T0076164.1 MGP_CASTEiJ_G0029494.1 mouse_genomes_project 5 152791168 152838742 - MGP_CASTEiJ_P0076164 Ubl3 protein_coding protein_coding MGP_CASTEiJ_T0076165.1 MGP_CASTEiJ_G0029494.1 mouse_genomes_project 5 152792007 152823546 - Ubl3 protein_coding processed_transcript MGP_CASTEiJ_T0076166.1 MGP_CASTEiJ_G0029494.1 mouse_genomes_project 5 152795294 152837623 - Ubl3 protein_coding processed_transcript MGP_CASTEiJ_T0076167.1 MGP_CASTEiJ_G0029494.1 mouse_genomes_project 5 152795304 152837615 - Ubl3 protein_coding processed_transcript MGP_CASTEiJ_T0076168.1 MGP_CASTEiJ_G0029494.1 mouse_genomes_project 5 152832532 152838651 - Ubl3 protein_coding retained_intron MGP_CASTEiJ_T0014394.1 MGP_CASTEiJ_G0012557.1 mouse_genomes_project 5 21113026 21113551 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074647.1 MGP_CASTEiJ_G0029198.1 mouse_genomes_project 5 126625062 126640171 - MGP_CASTEiJ_P0074647 Rilpl2 protein_coding protein_coding MGP_CASTEiJ_T0074648.1 MGP_CASTEiJ_G0029198.1 mouse_genomes_project 5 126636961 126640115 - Rilpl2 protein_coding retained_intron MGP_CASTEiJ_T0007842.1 MGP_CASTEiJ_G0006421.1 mouse_genomes_project 5 5988537 5989803 - Gm15611 lincRNA lincRNA MGP_CASTEiJ_T0007952.1 MGP_CASTEiJ_G0006498.1 mouse_genomes_project 5 66195925 66201132 + Gm43698 lincRNA lincRNA MGP_CASTEiJ_T0007953.1 MGP_CASTEiJ_G0006498.1 mouse_genomes_project 5 66200858 66201951 + Gm43698 lincRNA lincRNA MGP_CASTEiJ_T0073143.1 MGP_CASTEiJ_G0028919.1 mouse_genomes_project 5 104167180 104204780 - MGP_CASTEiJ_P0073143 Sparcl1 protein_coding protein_coding MGP_CASTEiJ_T0073144.1 MGP_CASTEiJ_G0028919.1 mouse_genomes_project 5 104181742 104204486 - MGP_CASTEiJ_P0073144 Sparcl1 protein_coding protein_coding MGP_CASTEiJ_T0017401.1 MGP_CASTEiJ_G0014915.1 mouse_genomes_project 5 51032744 51056005 - 5033403H07Rik processed_transcript lincRNA MGP_CASTEiJ_T0017402.1 MGP_CASTEiJ_G0014915.1 mouse_genomes_project 5 51032757 51051784 - 5033403H07Rik processed_transcript lincRNA MGP_CASTEiJ_T0017403.1 MGP_CASTEiJ_G0014915.1 mouse_genomes_project 5 51049952 51051835 - 5033403H07Rik processed_transcript retained_intron MGP_CASTEiJ_T0071750.1 MGP_CASTEiJ_G0028638.1 mouse_genomes_project 5 42222843 42583444 - MGP_CASTEiJ_P0071750 Ldb2 protein_coding protein_coding MGP_CASTEiJ_T0071751.1 MGP_CASTEiJ_G0028638.1 mouse_genomes_project 5 42222843 42583424 - MGP_CASTEiJ_P0071751 Ldb2 protein_coding protein_coding MGP_CASTEiJ_T0071752.1 MGP_CASTEiJ_G0028638.1 mouse_genomes_project 5 42222843 42583485 - MGP_CASTEiJ_P0071752 Ldb2 protein_coding protein_coding MGP_CASTEiJ_T0071753.1 MGP_CASTEiJ_G0028638.1 mouse_genomes_project 5 42222851 42583407 - MGP_CASTEiJ_P0071753 Ldb2 protein_coding protein_coding MGP_CASTEiJ_T0071754.1 MGP_CASTEiJ_G0028638.1 mouse_genomes_project 5 42229901 42361882 - Ldb2 protein_coding processed_transcript MGP_CASTEiJ_T0071755.1 MGP_CASTEiJ_G0028638.1 mouse_genomes_project 5 42284593 42294212 - Ldb2 protein_coding processed_transcript MGP_CASTEiJ_T0071756.1 MGP_CASTEiJ_G0028638.1 mouse_genomes_project 5 42300728 42583457 - Ldb2 protein_coding retained_intron MGP_CASTEiJ_T0008243.1 MGP_CASTEiJ_G0006702.1 mouse_genomes_project 5 153299921 153304863 + lincRNA lincRNA MGP_CASTEiJ_T0074650.1 MGP_CASTEiJ_G0029200.1 mouse_genomes_project 5 126645289 126653243 + MGP_CASTEiJ_P0074650 Snrnp35 protein_coding protein_coding MGP_CASTEiJ_T0074651.1 MGP_CASTEiJ_G0029200.1 mouse_genomes_project 5 126645357 126652609 + MGP_CASTEiJ_P0074651 Snrnp35 protein_coding protein_coding MGP_CASTEiJ_T0074652.1 MGP_CASTEiJ_G0029200.1 mouse_genomes_project 5 126645607 126653226 + MGP_CASTEiJ_P0074652 Snrnp35 protein_coding protein_coding MGP_CASTEiJ_T0008138.1 MGP_CASTEiJ_G0006631.1 mouse_genomes_project 5 121494510 121498010 - Gm43050 lincRNA lincRNA MGP_CASTEiJ_T0008139.1 MGP_CASTEiJ_G0006631.1 mouse_genomes_project 5 121497119 121497881 - Gm43050 lincRNA lincRNA MGP_CASTEiJ_T0074892.1 MGP_CASTEiJ_G0029247.1 mouse_genomes_project 5 132737546 132751182 + MGP_CASTEiJ_P0074892 Tmem248 protein_coding protein_coding MGP_CASTEiJ_T0074893.1 MGP_CASTEiJ_G0029247.1 mouse_genomes_project 5 132740190 132753736 + MGP_CASTEiJ_P0074893 Tmem248 protein_coding protein_coding MGP_CASTEiJ_T0074894.1 MGP_CASTEiJ_G0029247.1 mouse_genomes_project 5 132740190 132765407 + MGP_CASTEiJ_P0074894 Tmem248 protein_coding protein_coding MGP_CASTEiJ_T0074895.1 MGP_CASTEiJ_G0029247.1 mouse_genomes_project 5 132740280 132753612 + MGP_CASTEiJ_P0074895 Tmem248 protein_coding protein_coding MGP_CASTEiJ_T0074896.1 MGP_CASTEiJ_G0029247.1 mouse_genomes_project 5 132742759 132765307 + MGP_CASTEiJ_P0074896 Tmem248 protein_coding protein_coding MGP_CASTEiJ_T0014650.1 MGP_CASTEiJ_G0012813.1 mouse_genomes_project 5 140460302 140460610 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071107.1 MGP_CASTEiJ_G0028536.1 mouse_genomes_project 5 28791495 28806779 - MGP_CASTEiJ_P0071107 Supt7l protein_coding protein_coding MGP_CASTEiJ_T0071108.1 MGP_CASTEiJ_G0028536.1 mouse_genomes_project 5 28791501 28806742 - MGP_CASTEiJ_P0071108 Supt7l protein_coding protein_coding MGP_CASTEiJ_T0071109.1 MGP_CASTEiJ_G0028536.1 mouse_genomes_project 5 28792255 28805255 - MGP_CASTEiJ_P0071109 Supt7l protein_coding protein_coding MGP_CASTEiJ_T0071110.1 MGP_CASTEiJ_G0028536.1 mouse_genomes_project 5 28796082 28806737 - MGP_CASTEiJ_P0071110 Supt7l protein_coding protein_coding MGP_CASTEiJ_T0071111.1 MGP_CASTEiJ_G0028536.1 mouse_genomes_project 5 28800963 28807813 - Supt7l protein_coding retained_intron MGP_CASTEiJ_T0071112.1 MGP_CASTEiJ_G0028536.1 mouse_genomes_project 5 28805462 28806708 - Supt7l protein_coding retained_intron MGP_CASTEiJ_T0071375.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32120019 32123578 - MGP_CASTEiJ_P0071375 Mfsd10 protein_coding protein_coding MGP_CASTEiJ_T0071376.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32120023 32123601 - MGP_CASTEiJ_P0071376 Mfsd10 protein_coding protein_coding MGP_CASTEiJ_T0071377.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32120024 32121106 - Mfsd10 protein_coding retained_intron MGP_CASTEiJ_T0071378.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32120025 32121008 - Mfsd10 protein_coding retained_intron MGP_CASTEiJ_T0071379.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32120026 32123581 - MGP_CASTEiJ_P0071379 Mfsd10 protein_coding protein_coding MGP_CASTEiJ_T0071380.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32120102 32123192 - MGP_CASTEiJ_P0071380 Mfsd10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071381.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32120292 32121270 - Mfsd10 protein_coding retained_intron MGP_CASTEiJ_T0071382.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32120372 32122503 - Mfsd10 protein_coding retained_intron MGP_CASTEiJ_T0071383.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32120692 32121904 - MGP_CASTEiJ_P0071383 Mfsd10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071384.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32121009 32121444 - MGP_CASTEiJ_P0071384 Mfsd10 protein_coding protein_coding MGP_CASTEiJ_T0071385.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32121033 32122495 - MGP_CASTEiJ_P0071385 Mfsd10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071386.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32121229 32122134 - MGP_CASTEiJ_P0071386 Mfsd10 protein_coding protein_coding MGP_CASTEiJ_T0071387.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32121310 32123578 - MGP_CASTEiJ_P0071387 Mfsd10 protein_coding protein_coding MGP_CASTEiJ_T0071388.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32121435 32123226 - MGP_CASTEiJ_P0071388 Mfsd10 protein_coding protein_coding MGP_CASTEiJ_T0071389.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32121442 32122002 - MGP_CASTEiJ_P0071389 Mfsd10 protein_coding protein_coding MGP_CASTEiJ_T0071390.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32121466 32121880 - Mfsd10 protein_coding retained_intron MGP_CASTEiJ_T0071391.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32121488 32123514 - MGP_CASTEiJ_P0071391 Mfsd10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071392.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32121764 32122907 - Mfsd10 protein_coding processed_transcript MGP_CASTEiJ_T0071393.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32121991 32122920 - Mfsd10 protein_coding processed_transcript MGP_CASTEiJ_T0071394.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32122407 32123445 - Mfsd10 protein_coding retained_intron MGP_CASTEiJ_T0071395.1 MGP_CASTEiJ_G0028576.1 mouse_genomes_project 5 32122978 32123529 - MGP_CASTEiJ_P0071395 Mfsd10 protein_coding protein_coding MGP_CASTEiJ_T0007920.1 MGP_CASTEiJ_G0006471.1 mouse_genomes_project 5 42764061 42775924 + 4930431F12Rik lincRNA lincRNA MGP_CASTEiJ_T0070750.1 MGP_CASTEiJ_G0028477.1 mouse_genomes_project 5 25266185 25275142 + MGP_CASTEiJ_P0070750 Insig1 protein_coding protein_coding MGP_CASTEiJ_T0070751.1 MGP_CASTEiJ_G0028477.1 mouse_genomes_project 5 25269479 25271867 + Insig1 protein_coding retained_intron MGP_CASTEiJ_T0004586.1 MGP_CASTEiJ_G0003977.1 mouse_genomes_project 5 73794025 73827192 + Gm15984 antisense antisense MGP_CASTEiJ_T0004587.1 MGP_CASTEiJ_G0003977.1 mouse_genomes_project 5 73794449 73805427 + Gm15984 antisense antisense MGP_CASTEiJ_T0014600.1 MGP_CASTEiJ_G0012763.1 mouse_genomes_project 5 108807293 108807876 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076270.1 MGP_CASTEiJ_G0029509.1 mouse_genomes_project 5 155084399 155106046 - MGP_CASTEiJ_P0076270 N4bp2l1 protein_coding protein_coding MGP_CASTEiJ_T0076271.1 MGP_CASTEiJ_G0029509.1 mouse_genomes_project 5 155084402 155089687 - MGP_CASTEiJ_P0076271 N4bp2l1 protein_coding protein_coding MGP_CASTEiJ_T0076272.1 MGP_CASTEiJ_G0029509.1 mouse_genomes_project 5 155085426 155105983 - MGP_CASTEiJ_P0076272 N4bp2l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076273.1 MGP_CASTEiJ_G0029509.1 mouse_genomes_project 5 155086760 155108750 - MGP_CASTEiJ_P0076273 N4bp2l1 protein_coding protein_coding MGP_CASTEiJ_T0076274.1 MGP_CASTEiJ_G0029509.1 mouse_genomes_project 5 155103278 155106049 - MGP_CASTEiJ_P0076274 N4bp2l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076275.1 MGP_CASTEiJ_G0029509.1 mouse_genomes_project 5 155103281 155106021 - MGP_CASTEiJ_P0076275 N4bp2l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076276.1 MGP_CASTEiJ_G0029509.1 mouse_genomes_project 5 155103969 155105289 - N4bp2l1 protein_coding retained_intron MGP_CASTEiJ_T0004631.1 MGP_CASTEiJ_G0004006.1 mouse_genomes_project 5 106305003 106309160 - Lrrc8dos antisense antisense MGP_CASTEiJ_T0004544.1 MGP_CASTEiJ_G0003945.1 mouse_genomes_project 5 36436532 36447683 + Clnkos antisense antisense MGP_CASTEiJ_T0004545.1 MGP_CASTEiJ_G0003945.1 mouse_genomes_project 5 36436533 36447683 + Clnkos antisense antisense MGP_CASTEiJ_T0014585.1 MGP_CASTEiJ_G0012748.1 mouse_genomes_project 5 105322405 105322687 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001646.1 MGP_CASTEiJ_G0001569.1 mouse_genomes_project 5 81408361 81409367 + TEC TEC MGP_CASTEiJ_T0070787.1 MGP_CASTEiJ_G0028485.1 mouse_genomes_project 5 26686380 26691866 - MGP_CASTEiJ_P0070787 Mnx1 protein_coding protein_coding MGP_CASTEiJ_T0070788.1 MGP_CASTEiJ_G0028485.1 mouse_genomes_project 5 26686608 26691866 - MGP_CASTEiJ_P0070788 Mnx1 protein_coding protein_coding MGP_CASTEiJ_T0001647.1 MGP_CASTEiJ_G0001570.1 mouse_genomes_project 5 81720892 81722303 - TEC TEC MGP_CASTEiJ_T0099891.1 MGP_CASTEiJ_G0036804.1 mouse_genomes_project 5 74708752 74708857 - Gm24502 snRNA snRNA MGP_CASTEiJ_T0074059.1 MGP_CASTEiJ_G0029103.1 mouse_genomes_project 5 121498757 121506811 + MGP_CASTEiJ_P0074059 Tbx5 protein_coding protein_coding MGP_CASTEiJ_T0074060.1 MGP_CASTEiJ_G0029103.1 mouse_genomes_project 5 121500718 121558581 + MGP_CASTEiJ_P0074060 Tbx5 protein_coding protein_coding MGP_CASTEiJ_T0074061.1 MGP_CASTEiJ_G0029103.1 mouse_genomes_project 5 121502092 121512142 + MGP_CASTEiJ_P0074061 Tbx5 protein_coding protein_coding MGP_CASTEiJ_T0007989.1 MGP_CASTEiJ_G0006526.1 mouse_genomes_project 5 86531613 86634269 + Gm43055 lincRNA lincRNA MGP_CASTEiJ_T0008065.1 MGP_CASTEiJ_G0006584.1 mouse_genomes_project 5 111073076 111083704 + Gm26718 lincRNA lincRNA MGP_CASTEiJ_T0072598.1 MGP_CASTEiJ_G0028785.1 mouse_genomes_project 5 86897430 86908958 + MGP_CASTEiJ_P0072598 Ugt2b35 protein_coding protein_coding MGP_CASTEiJ_T0010368.1 MGP_CASTEiJ_G0008556.1 mouse_genomes_project 5 21736483 21736581 + Mir671 miRNA miRNA MGP_CASTEiJ_T0074949.1 MGP_CASTEiJ_G0029257.1 mouse_genomes_project 5 136998090 137008215 - MGP_CASTEiJ_P0074949 Ncf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074950.1 MGP_CASTEiJ_G0029257.1 mouse_genomes_project 5 136998297 137008215 - MGP_CASTEiJ_P0074950 Ncf1 protein_coding protein_coding MGP_CASTEiJ_T0074951.1 MGP_CASTEiJ_G0029257.1 mouse_genomes_project 5 136998297 137008215 - MGP_CASTEiJ_P0074951 Ncf1 protein_coding protein_coding MGP_CASTEiJ_T0074952.1 MGP_CASTEiJ_G0029257.1 mouse_genomes_project 5 136998297 137008215 - MGP_CASTEiJ_P0074952 Ncf1 protein_coding protein_coding MGP_CASTEiJ_T0074953.1 MGP_CASTEiJ_G0029257.1 mouse_genomes_project 5 136999378 137000236 - Ncf1 protein_coding retained_intron MGP_CASTEiJ_T0074954.1 MGP_CASTEiJ_G0029257.1 mouse_genomes_project 5 137001489 137007150 - Ncf1 protein_coding retained_intron MGP_CASTEiJ_T0074955.1 MGP_CASTEiJ_G0029257.1 mouse_genomes_project 5 137004454 137006545 - Ncf1 protein_coding retained_intron MGP_CASTEiJ_T0001420.1 MGP_CASTEiJ_G0001349.1 mouse_genomes_project 5 21571132 21573241 - TEC TEC MGP_CASTEiJ_T0001421.1 MGP_CASTEiJ_G0001349.1 mouse_genomes_project 5 21572699 21573239 - TEC TEC MGP_CASTEiJ_T0071444.1 MGP_CASTEiJ_G0028584.1 mouse_genomes_project 5 32600647 32616309 - MGP_CASTEiJ_P0071444 Lrpap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071445.1 MGP_CASTEiJ_G0028584.1 mouse_genomes_project 5 32602253 32616310 - MGP_CASTEiJ_P0071445 Lrpap1 protein_coding protein_coding MGP_CASTEiJ_T0071446.1 MGP_CASTEiJ_G0028584.1 mouse_genomes_project 5 32603815 32613060 - MGP_CASTEiJ_P0071446 Lrpap1 protein_coding protein_coding MGP_CASTEiJ_T0071447.1 MGP_CASTEiJ_G0028584.1 mouse_genomes_project 5 32604041 32616233 - Lrpap1 protein_coding retained_intron MGP_CASTEiJ_T0071448.1 MGP_CASTEiJ_G0028584.1 mouse_genomes_project 5 32612673 32616240 - Lrpap1 protein_coding retained_intron MGP_CASTEiJ_T0071449.1 MGP_CASTEiJ_G0028584.1 mouse_genomes_project 5 32613054 32615082 - Lrpap1 protein_coding processed_transcript MGP_CASTEiJ_T0001702.1 MGP_CASTEiJ_G0001625.1 mouse_genomes_project 5 114110475 114111039 + TEC TEC MGP_CASTEiJ_T0099877.1 MGP_CASTEiJ_G0036790.1 mouse_genomes_project 5 38153126 38153300 - Gm23022 snRNA snRNA MGP_CASTEiJ_T0074942.1 MGP_CASTEiJ_G0029255.1 mouse_genomes_project 5 136916780 136949329 - MGP_CASTEiJ_P0074942 Wbscr16 protein_coding protein_coding MGP_CASTEiJ_T0074943.1 MGP_CASTEiJ_G0029255.1 mouse_genomes_project 5 136924372 136940491 - Wbscr16 protein_coding retained_intron MGP_CASTEiJ_T0074944.1 MGP_CASTEiJ_G0029255.1 mouse_genomes_project 5 136936051 136939473 - Wbscr16 protein_coding retained_intron MGP_CASTEiJ_T0014680.1 MGP_CASTEiJ_G0012843.1 mouse_genomes_project 5 150083547 150083731 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099926.1 MGP_CASTEiJ_G0036839.1 mouse_genomes_project 5 138785626 138785733 + Gm22450 snRNA snRNA MGP_CASTEiJ_T0008161.1 MGP_CASTEiJ_G0006644.1 mouse_genomes_project 5 127411185 127452829 - Gm42637 lincRNA lincRNA MGP_CASTEiJ_T0075525.1 MGP_CASTEiJ_G0029359.1 mouse_genomes_project 5 141248106 141256541 + MGP_CASTEiJ_P0075525 Ap4m1 protein_coding protein_coding MGP_CASTEiJ_T0075526.1 MGP_CASTEiJ_G0029359.1 mouse_genomes_project 5 141248109 141251137 + MGP_CASTEiJ_P0075526 Ap4m1 protein_coding protein_coding MGP_CASTEiJ_T0075527.1 MGP_CASTEiJ_G0029359.1 mouse_genomes_project 5 141248151 141250494 + Ap4m1 protein_coding retained_intron MGP_CASTEiJ_T0075528.1 MGP_CASTEiJ_G0029359.1 mouse_genomes_project 5 141248172 141254762 + MGP_CASTEiJ_P0075528 Ap4m1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075529.1 MGP_CASTEiJ_G0029359.1 mouse_genomes_project 5 141248689 141251068 + Ap4m1 protein_coding retained_intron MGP_CASTEiJ_T0075530.1 MGP_CASTEiJ_G0029359.1 mouse_genomes_project 5 141250909 141253280 + Ap4m1 protein_coding retained_intron MGP_CASTEiJ_T0075531.1 MGP_CASTEiJ_G0029359.1 mouse_genomes_project 5 141252648 141254768 + Ap4m1 protein_coding retained_intron MGP_CASTEiJ_T0004713.1 MGP_CASTEiJ_G0004066.1 mouse_genomes_project 5 134547413 134550809 + 4930563F08Rik antisense antisense MGP_CASTEiJ_T0001548.1 MGP_CASTEiJ_G0001473.1 mouse_genomes_project 5 56062269 56064866 + TEC TEC MGP_CASTEiJ_T0098610.1 MGP_CASTEiJ_G0035541.1 mouse_genomes_project 5 51210181 51210260 + n-R5s171 rRNA rRNA MGP_CASTEiJ_T0001654.1 MGP_CASTEiJ_G0001577.1 mouse_genomes_project 5 92368369 92368927 - TEC TEC MGP_CASTEiJ_T0102341.1 MGP_CASTEiJ_G0039066.1 mouse_genomes_project 5 48132836 48294978 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0075384.1 MGP_CASTEiJ_G0029332.1 mouse_genomes_project 5 140537943 140538931 - MGP_CASTEiJ_P0075384 Pop7 protein_coding protein_coding MGP_CASTEiJ_T0075385.1 MGP_CASTEiJ_G0029332.1 mouse_genomes_project 5 140537944 140539024 - MGP_CASTEiJ_P0075385 Pop7 protein_coding protein_coding MGP_CASTEiJ_T0008067.1 MGP_CASTEiJ_G0006586.1 mouse_genomes_project 5 111354096 111368756 + A630023P12Rik lincRNA lincRNA MGP_CASTEiJ_T0008068.1 MGP_CASTEiJ_G0006586.1 mouse_genomes_project 5 111354117 111354696 + A630023P12Rik lincRNA lincRNA MGP_CASTEiJ_T0008069.1 MGP_CASTEiJ_G0006586.1 mouse_genomes_project 5 111360094 111367916 + A630023P12Rik lincRNA lincRNA MGP_CASTEiJ_T0008070.1 MGP_CASTEiJ_G0006586.1 mouse_genomes_project 5 111360130 111365278 + A630023P12Rik lincRNA lincRNA MGP_CASTEiJ_T0008071.1 MGP_CASTEiJ_G0006586.1 mouse_genomes_project 5 111360161 111368764 + A630023P12Rik lincRNA lincRNA MGP_CASTEiJ_T0072288.1 MGP_CASTEiJ_G0028729.1 mouse_genomes_project 5 71940136 71949032 - MGP_CASTEiJ_P0072288 Gm10135 protein_coding protein_coding MGP_CASTEiJ_T0010384.1 MGP_CASTEiJ_G0008572.1 mouse_genomes_project 5 63221390 63221507 - Gm25306 miRNA miRNA MGP_CASTEiJ_T0014620.1 MGP_CASTEiJ_G0012783.1 mouse_genomes_project 5 116483533 116483835 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008155.1 MGP_CASTEiJ_G0006639.1 mouse_genomes_project 5 125216274 125220311 + 4932422M17Rik lincRNA lincRNA MGP_CASTEiJ_T0071853.1 MGP_CASTEiJ_G0028653.1 mouse_genomes_project 5 50400847 50501313 - MGP_CASTEiJ_P0071853 Ccdc149 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071854.1 MGP_CASTEiJ_G0028653.1 mouse_genomes_project 5 50400853 50501392 - MGP_CASTEiJ_P0071854 Ccdc149 protein_coding protein_coding MGP_CASTEiJ_T0071855.1 MGP_CASTEiJ_G0028653.1 mouse_genomes_project 5 50400853 50501430 - MGP_CASTEiJ_P0071855 Ccdc149 protein_coding protein_coding MGP_CASTEiJ_T0007843.1 MGP_CASTEiJ_G0006422.1 mouse_genomes_project 5 6264763 6266560 - Gm15734 lincRNA lincRNA MGP_CASTEiJ_T0014693.1 MGP_CASTEiJ_G0012856.1 mouse_genomes_project 5 153913832 153914382 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007887.1 MGP_CASTEiJ_G0006450.1 mouse_genomes_project 5 31781882 31801254 - Gm43458 lincRNA lincRNA MGP_CASTEiJ_T0074309.1 MGP_CASTEiJ_G0029150.1 mouse_genomes_project 5 124368850 124378338 + MGP_CASTEiJ_P0074309 Vps29 protein_coding protein_coding MGP_CASTEiJ_T0074310.1 MGP_CASTEiJ_G0029150.1 mouse_genomes_project 5 124368871 124377543 + MGP_CASTEiJ_P0074310 Vps29 protein_coding protein_coding MGP_CASTEiJ_T0074311.1 MGP_CASTEiJ_G0029150.1 mouse_genomes_project 5 124368874 124377288 + Vps29 protein_coding processed_transcript MGP_CASTEiJ_T0074312.1 MGP_CASTEiJ_G0029150.1 mouse_genomes_project 5 124368887 124378263 + MGP_CASTEiJ_P0074312 Vps29 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074313.1 MGP_CASTEiJ_G0029150.1 mouse_genomes_project 5 124368905 124377237 + MGP_CASTEiJ_P0074313 Vps29 protein_coding protein_coding MGP_CASTEiJ_T0074314.1 MGP_CASTEiJ_G0029150.1 mouse_genomes_project 5 124368925 124377319 + MGP_CASTEiJ_P0074314 Vps29 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074315.1 MGP_CASTEiJ_G0029150.1 mouse_genomes_project 5 124368939 124377974 + MGP_CASTEiJ_P0074315 Vps29 protein_coding protein_coding MGP_CASTEiJ_T0074316.1 MGP_CASTEiJ_G0029150.1 mouse_genomes_project 5 124372709 124376043 + Vps29 protein_coding retained_intron MGP_CASTEiJ_T0008131.1 MGP_CASTEiJ_G0006625.1 mouse_genomes_project 5 120804282 120809807 - Gm7538 lincRNA lincRNA MGP_CASTEiJ_T0004743.1 MGP_CASTEiJ_G0004088.1 mouse_genomes_project 5 144904306 144912062 - Gm16035 antisense antisense MGP_CASTEiJ_T0070575.1 MGP_CASTEiJ_G0028442.1 mouse_genomes_project 5 20921306 20928696 - MGP_CASTEiJ_P0070575 Tomm7 protein_coding protein_coding MGP_CASTEiJ_T0014409.1 MGP_CASTEiJ_G0012572.1 mouse_genomes_project 5 23976978 23977384 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008004.1 MGP_CASTEiJ_G0006541.1 mouse_genomes_project 5 96656636 96671557 + Gm8013 lincRNA lincRNA MGP_CASTEiJ_T0074093.1 MGP_CASTEiJ_G0029111.1 mouse_genomes_project 5 122331797 122351803 + MGP_CASTEiJ_P0074093 Iqcd protein_coding protein_coding MGP_CASTEiJ_T0074094.1 MGP_CASTEiJ_G0029111.1 mouse_genomes_project 5 122331804 122351807 + MGP_CASTEiJ_P0074094 Iqcd protein_coding protein_coding MGP_CASTEiJ_T0074096.1 MGP_CASTEiJ_G0029111.1 mouse_genomes_project 5 122343046 122351814 + MGP_CASTEiJ_P0074096 Iqcd protein_coding unknown_likely_coding MGP_CASTEiJ_T0014632.1 MGP_CASTEiJ_G0012795.1 mouse_genomes_project 5 124722502 124722901 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073913.1 MGP_CASTEiJ_G0029078.1 mouse_genomes_project 5 116849681 116910601 + MGP_CASTEiJ_P0073913 Gcn1l1 protein_coding protein_coding MGP_CASTEiJ_T0073914.1 MGP_CASTEiJ_G0029078.1 mouse_genomes_project 5 116849699 116870264 + Gcn1l1 protein_coding retained_intron MGP_CASTEiJ_T0073915.1 MGP_CASTEiJ_G0029078.1 mouse_genomes_project 5 116849701 116867354 + Gcn1l1 protein_coding retained_intron MGP_CASTEiJ_T0073916.1 MGP_CASTEiJ_G0029078.1 mouse_genomes_project 5 116849703 116870772 + Gcn1l1 protein_coding retained_intron MGP_CASTEiJ_T0073917.1 MGP_CASTEiJ_G0029078.1 mouse_genomes_project 5 116849730 116851653 + Gcn1l1 protein_coding retained_intron MGP_CASTEiJ_T0073918.1 MGP_CASTEiJ_G0029078.1 mouse_genomes_project 5 116868433 116873453 + Gcn1l1 protein_coding processed_transcript MGP_CASTEiJ_T0073919.1 MGP_CASTEiJ_G0029078.1 mouse_genomes_project 5 116892740 116910595 + Gcn1l1 protein_coding processed_transcript MGP_CASTEiJ_T0073920.1 MGP_CASTEiJ_G0029078.1 mouse_genomes_project 5 116897870 116898535 + Gcn1l1 protein_coding retained_intron MGP_CASTEiJ_T0073921.1 MGP_CASTEiJ_G0029078.1 mouse_genomes_project 5 116899741 116901332 + Gcn1l1 protein_coding processed_transcript MGP_CASTEiJ_T0073922.1 MGP_CASTEiJ_G0029078.1 mouse_genomes_project 5 116902814 116903967 + Gcn1l1 protein_coding retained_intron MGP_CASTEiJ_T0001505.1 MGP_CASTEiJ_G0001431.1 mouse_genomes_project 5 46720495 46723393 - TEC TEC MGP_CASTEiJ_T0001600.1 MGP_CASTEiJ_G0001524.1 mouse_genomes_project 5 65728137 65730846 + TEC TEC MGP_CASTEiJ_T0098952.1 MGP_CASTEiJ_G0035876.1 mouse_genomes_project 5 1789016 1790741 - Gm43113 sense_intronic sense_intronic MGP_CASTEiJ_T0001393.1 MGP_CASTEiJ_G0001322.1 mouse_genomes_project 5 9070120 9078250 - TEC TEC MGP_CASTEiJ_T0071126.1 MGP_CASTEiJ_G0028538.1 mouse_genomes_project 5 28877763 28943206 + Mrpl33 protein_coding processed_transcript MGP_CASTEiJ_T0071127.1 MGP_CASTEiJ_G0028538.1 mouse_genomes_project 5 28879658 28907296 + Mrpl33 protein_coding processed_transcript MGP_CASTEiJ_T0071128.1 MGP_CASTEiJ_G0028538.1 mouse_genomes_project 5 28898556 28907296 + MGP_CASTEiJ_P0071128 Mrpl33 protein_coding protein_coding MGP_CASTEiJ_T0071129.1 MGP_CASTEiJ_G0028538.1 mouse_genomes_project 5 28898573 28930132 + Mrpl33 protein_coding processed_transcript MGP_CASTEiJ_T0071130.1 MGP_CASTEiJ_G0028538.1 mouse_genomes_project 5 28898589 28943206 + Mrpl33 protein_coding processed_transcript MGP_CASTEiJ_T0071131.1 MGP_CASTEiJ_G0028538.1 mouse_genomes_project 5 28898602 28952733 + MGP_CASTEiJ_P0071131 Mrpl33 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071132.1 MGP_CASTEiJ_G0028538.1 mouse_genomes_project 5 28898636 28907294 + Mrpl33 protein_coding retained_intron MGP_CASTEiJ_T0071133.1 MGP_CASTEiJ_G0028538.1 mouse_genomes_project 5 28898640 28907289 + Mrpl33 protein_coding processed_transcript MGP_CASTEiJ_T0071134.1 MGP_CASTEiJ_G0028538.1 mouse_genomes_project 5 28898775 28907224 + Mrpl33 protein_coding retained_intron MGP_CASTEiJ_T0071137.1 MGP_CASTEiJ_G0028538.1 mouse_genomes_project 5 28942969 28946478 + Mrpl33 protein_coding processed_transcript MGP_CASTEiJ_T0071138.1 MGP_CASTEiJ_G0028538.1 mouse_genomes_project 5 28943833 28951776 + Mrpl33 protein_coding processed_transcript MGP_CASTEiJ_T0072990.1 MGP_CASTEiJ_G0028891.1 mouse_genomes_project 5 99863398 99863995 + MGP_CASTEiJ_P0072990 4930524J08Rik protein_coding protein_coding MGP_CASTEiJ_T0073447.1 MGP_CASTEiJ_G0028987.1 mouse_genomes_project 5 111073041 111083770 - MGP_CASTEiJ_P0073447 Pgam5 protein_coding protein_coding MGP_CASTEiJ_T0073448.1 MGP_CASTEiJ_G0028987.1 mouse_genomes_project 5 111073067 111083744 - MGP_CASTEiJ_P0073448 Pgam5 protein_coding protein_coding MGP_CASTEiJ_T0073449.1 MGP_CASTEiJ_G0028987.1 mouse_genomes_project 5 111079084 111079884 - Pgam5 protein_coding retained_intron MGP_CASTEiJ_T0073450.1 MGP_CASTEiJ_G0028987.1 mouse_genomes_project 5 111079430 111083711 - MGP_CASTEiJ_P0073450 Pgam5 protein_coding protein_coding MGP_CASTEiJ_T0073737.1 MGP_CASTEiJ_G0029041.1 mouse_genomes_project 5 115527083 115568898 + MGP_CASTEiJ_P0073737 Ube3b protein_coding protein_coding MGP_CASTEiJ_T0073738.1 MGP_CASTEiJ_G0029041.1 mouse_genomes_project 5 115527302 115568897 + MGP_CASTEiJ_P0073738 Ube3b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073739.1 MGP_CASTEiJ_G0029041.1 mouse_genomes_project 5 115527309 115538634 + MGP_CASTEiJ_P0073739 Ube3b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073740.1 MGP_CASTEiJ_G0029041.1 mouse_genomes_project 5 115545120 115568897 + MGP_CASTEiJ_P0073740 Ube3b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073741.1 MGP_CASTEiJ_G0029041.1 mouse_genomes_project 5 115549130 115558652 + Ube3b protein_coding processed_transcript MGP_CASTEiJ_T0071157.1 MGP_CASTEiJ_G0028542.1 mouse_genomes_project 5 29576975 29677492 + Plb1 protein_coding retained_intron MGP_CASTEiJ_T0071158.1 MGP_CASTEiJ_G0028542.1 mouse_genomes_project 5 29576977 29579872 + Plb1 protein_coding retained_intron MGP_CASTEiJ_T0071159.1 MGP_CASTEiJ_G0028542.1 mouse_genomes_project 5 29576977 29594521 + Plb1 protein_coding processed_transcript MGP_CASTEiJ_T0071160.1 MGP_CASTEiJ_G0028542.1 mouse_genomes_project 5 29576981 29714743 + MGP_CASTEiJ_P0071160 Plb1 protein_coding protein_coding MGP_CASTEiJ_T0071161.1 MGP_CASTEiJ_G0028542.1 mouse_genomes_project 5 29577015 29640669 + Plb1 protein_coding retained_intron MGP_CASTEiJ_T0071162.1 MGP_CASTEiJ_G0028542.1 mouse_genomes_project 5 29583407 29669475 + MGP_CASTEiJ_P0071162 Plb1 protein_coding protein_coding MGP_CASTEiJ_T0071163.1 MGP_CASTEiJ_G0028542.1 mouse_genomes_project 5 29591704 29714745 + MGP_CASTEiJ_P0071163 Plb1 protein_coding protein_coding MGP_CASTEiJ_T0071164.1 MGP_CASTEiJ_G0028542.1 mouse_genomes_project 5 29701928 29716909 + Plb1 protein_coding processed_transcript MGP_CASTEiJ_T0071165.1 MGP_CASTEiJ_G0028542.1 mouse_genomes_project 5 29703050 29714738 + Plb1 protein_coding processed_transcript MGP_CASTEiJ_T0011284.1 MGP_CASTEiJ_G0009472.1 mouse_genomes_project 5 142654788 142655091 + Gm27316 misc_RNA misc_RNA MGP_CASTEiJ_T0072777.1 MGP_CASTEiJ_G0028844.1 mouse_genomes_project 5 91184843 91204338 + MGP_CASTEiJ_P0072777 Ereg protein_coding protein_coding MGP_CASTEiJ_T0099856.1 MGP_CASTEiJ_G0036769.1 mouse_genomes_project 5 3416789 3416882 + Gm24686 snRNA snRNA MGP_CASTEiJ_T0001650.1 MGP_CASTEiJ_G0001573.1 mouse_genomes_project 5 90500687 90503336 + TEC TEC MGP_CASTEiJ_T0072585.1 MGP_CASTEiJ_G0028781.1 mouse_genomes_project 5 86514859 86548626 - MGP_CASTEiJ_P0072585 Tmprss11e protein_coding protein_coding MGP_CASTEiJ_T0014655.1 MGP_CASTEiJ_G0012818.1 mouse_genomes_project 5 141004188 141004931 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014630.1 MGP_CASTEiJ_G0012793.1 mouse_genomes_project 5 124314038 124314655 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075516.1 MGP_CASTEiJ_G0029358.1 mouse_genomes_project 5 141238368 141241700 - Mcm7 protein_coding retained_intron MGP_CASTEiJ_T0075517.1 MGP_CASTEiJ_G0029358.1 mouse_genomes_project 5 141238368 141247923 - MGP_CASTEiJ_P0075517 Mcm7 protein_coding protein_coding MGP_CASTEiJ_T0075518.1 MGP_CASTEiJ_G0029358.1 mouse_genomes_project 5 141240807 141247861 - MGP_CASTEiJ_P0075518 Mcm7 protein_coding protein_coding MGP_CASTEiJ_T0075519.1 MGP_CASTEiJ_G0029358.1 mouse_genomes_project 5 141243844 141246487 - Mcm7 protein_coding retained_intron MGP_CASTEiJ_T0075520.1 MGP_CASTEiJ_G0029358.1 mouse_genomes_project 5 141244240 141247371 - MGP_CASTEiJ_P0075520 Mcm7 protein_coding protein_coding MGP_CASTEiJ_T0075521.1 MGP_CASTEiJ_G0029358.1 mouse_genomes_project 5 141244493 141245749 - Mcm7 protein_coding retained_intron MGP_CASTEiJ_T0075522.1 MGP_CASTEiJ_G0029358.1 mouse_genomes_project 5 141244662 141247122 - MGP_CASTEiJ_P0075522 Mcm7 protein_coding protein_coding MGP_CASTEiJ_T0075523.1 MGP_CASTEiJ_G0029358.1 mouse_genomes_project 5 141244663 141247920 - MGP_CASTEiJ_P0075523 Mcm7 protein_coding protein_coding MGP_CASTEiJ_T0075524.1 MGP_CASTEiJ_G0029358.1 mouse_genomes_project 5 141244993 141246766 - MGP_CASTEiJ_P0075524 Mcm7 protein_coding protein_coding MGP_CASTEiJ_T0004632.1 MGP_CASTEiJ_G0004007.1 mouse_genomes_project 5 108010186 108022421 - Gm42902 antisense antisense MGP_CASTEiJ_T0102351.1 MGP_CASTEiJ_G0039076.1 mouse_genomes_project 5 87097883 87107350 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0074131.1 MGP_CASTEiJ_G0029120.1 mouse_genomes_project 5 122649262 122660857 + MGP_CASTEiJ_P0074131 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0007999.1 MGP_CASTEiJ_G0006536.1 mouse_genomes_project 5 92204892 92220390 + Gm26582 lincRNA lincRNA MGP_CASTEiJ_T0014599.1 MGP_CASTEiJ_G0012762.1 mouse_genomes_project 5 108797727 108800148 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014604.1 MGP_CASTEiJ_G0012767.1 mouse_genomes_project 5 109906296 109908182 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073715.1 MGP_CASTEiJ_G0029038.1 mouse_genomes_project 5 115390333 115411876 - MGP_CASTEiJ_P0073715 Foxn4 protein_coding protein_coding MGP_CASTEiJ_T0073716.1 MGP_CASTEiJ_G0029038.1 mouse_genomes_project 5 115391752 115399346 - MGP_CASTEiJ_P0073716 Foxn4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073717.1 MGP_CASTEiJ_G0029038.1 mouse_genomes_project 5 115396601 115411771 - MGP_CASTEiJ_P0073717 Foxn4 protein_coding protein_coding MGP_CASTEiJ_T0073718.1 MGP_CASTEiJ_G0029038.1 mouse_genomes_project 5 115398931 115411818 - Foxn4 protein_coding retained_intron MGP_CASTEiJ_T0011260.1 MGP_CASTEiJ_G0009448.1 mouse_genomes_project 5 22377463 22377746 - Gm26356 misc_RNA misc_RNA MGP_CASTEiJ_T0014527.1 MGP_CASTEiJ_G0012690.1 mouse_genomes_project 5 76528925 76529497 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075297.1 MGP_CASTEiJ_G0029314.1 mouse_genomes_project 5 139951833 139965836 + MGP_CASTEiJ_P0075297 Fis1 protein_coding protein_coding MGP_CASTEiJ_T0075298.1 MGP_CASTEiJ_G0029314.1 mouse_genomes_project 5 139951964 139965753 + MGP_CASTEiJ_P0075298 Fis1 protein_coding protein_coding MGP_CASTEiJ_T0075299.1 MGP_CASTEiJ_G0029314.1 mouse_genomes_project 5 139961682 139965838 + MGP_CASTEiJ_P0075299 Fis1 protein_coding protein_coding MGP_CASTEiJ_T0075300.1 MGP_CASTEiJ_G0029314.1 mouse_genomes_project 5 139962038 139965561 + Fis1 protein_coding processed_transcript MGP_CASTEiJ_T0075301.1 MGP_CASTEiJ_G0029314.1 mouse_genomes_project 5 139962049 139965714 + Fis1 protein_coding processed_transcript MGP_CASTEiJ_T0075302.1 MGP_CASTEiJ_G0029314.1 mouse_genomes_project 5 139962450 139965615 + Fis1 protein_coding processed_transcript MGP_CASTEiJ_T0008123.1 MGP_CASTEiJ_G0006618.1 mouse_genomes_project 5 118750870 118753796 - BC051077 lincRNA lincRNA MGP_CASTEiJ_T0073080.1 MGP_CASTEiJ_G0028907.1 mouse_genomes_project 5 101852307 102010461 - MGP_CASTEiJ_P0073080 Wdfy3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073081.1 MGP_CASTEiJ_G0028907.1 mouse_genomes_project 5 101856013 102010556 - MGP_CASTEiJ_P0073081 Wdfy3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073082.1 MGP_CASTEiJ_G0028907.1 mouse_genomes_project 5 101856014 102105052 - MGP_CASTEiJ_P0073082 Wdfy3 protein_coding protein_coding MGP_CASTEiJ_T0073083.1 MGP_CASTEiJ_G0028907.1 mouse_genomes_project 5 101857985 101873528 - Wdfy3 protein_coding retained_intron MGP_CASTEiJ_T0073084.1 MGP_CASTEiJ_G0028907.1 mouse_genomes_project 5 101859206 102010556 - MGP_CASTEiJ_P0073084 Wdfy3 protein_coding protein_coding MGP_CASTEiJ_T0073085.1 MGP_CASTEiJ_G0028907.1 mouse_genomes_project 5 101950593 101958612 - MGP_CASTEiJ_P0073085 Wdfy3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073086.1 MGP_CASTEiJ_G0028907.1 mouse_genomes_project 5 101957051 102105052 - MGP_CASTEiJ_P0073086 Wdfy3 protein_coding protein_coding MGP_CASTEiJ_T0073087.1 MGP_CASTEiJ_G0028907.1 mouse_genomes_project 5 101962846 101965447 - Wdfy3 protein_coding processed_transcript MGP_CASTEiJ_T0014557.1 MGP_CASTEiJ_G0012720.1 mouse_genomes_project 5 91896219 91897099 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073812.1 MGP_CASTEiJ_G0029056.1 mouse_genomes_project 5 116108067 116125319 + MGP_CASTEiJ_P0073812 Oasl1 protein_coding protein_coding MGP_CASTEiJ_T0073813.1 MGP_CASTEiJ_G0029056.1 mouse_genomes_project 5 116108091 116125322 + MGP_CASTEiJ_P0073813 Oasl1 protein_coding protein_coding MGP_CASTEiJ_T0073814.1 MGP_CASTEiJ_G0029056.1 mouse_genomes_project 5 116108249 116122015 + Oasl1 protein_coding processed_transcript MGP_CASTEiJ_T0073815.1 MGP_CASTEiJ_G0029056.1 mouse_genomes_project 5 116108262 116122107 + Oasl1 protein_coding processed_transcript MGP_CASTEiJ_T0073816.1 MGP_CASTEiJ_G0029056.1 mouse_genomes_project 5 116114687 116119512 + Oasl1 protein_coding retained_intron MGP_CASTEiJ_T0073817.1 MGP_CASTEiJ_G0029056.1 mouse_genomes_project 5 116122064 116125094 + Oasl1 protein_coding processed_transcript MGP_CASTEiJ_T0001718.1 MGP_CASTEiJ_G0001641.1 mouse_genomes_project 5 117827223 117828577 - TEC TEC MGP_CASTEiJ_T0001814.1 MGP_CASTEiJ_G0001735.1 mouse_genomes_project 5 137327176 137328641 - TEC TEC MGP_CASTEiJ_T0001764.1 MGP_CASTEiJ_G0001686.1 mouse_genomes_project 5 127504954 127507713 - TEC TEC MGP_CASTEiJ_T0014628.1 MGP_CASTEiJ_G0012791.1 mouse_genomes_project 5 123432412 123432745 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001436.1 MGP_CASTEiJ_G0001363.1 mouse_genomes_project 5 28732839 28734219 + TEC TEC MGP_CASTEiJ_T0001442.1 MGP_CASTEiJ_G0001368.1 mouse_genomes_project 5 29818542 29821011 + TEC TEC MGP_CASTEiJ_T0001562.1 MGP_CASTEiJ_G0001487.1 mouse_genomes_project 5 61085350 61086408 - TEC TEC MGP_CASTEiJ_T0074673.1 MGP_CASTEiJ_G0029204.1 mouse_genomes_project 5 126752136 126773652 + MGP_CASTEiJ_P0074673 Gtf2h3 protein_coding protein_coding MGP_CASTEiJ_T0074674.1 MGP_CASTEiJ_G0029204.1 mouse_genomes_project 5 126752138 126754676 + Gtf2h3 protein_coding retained_intron MGP_CASTEiJ_T0074675.1 MGP_CASTEiJ_G0029204.1 mouse_genomes_project 5 126752162 126768601 + Gtf2h3 protein_coding retained_intron MGP_CASTEiJ_T0074676.1 MGP_CASTEiJ_G0029204.1 mouse_genomes_project 5 126756849 126771579 + Gtf2h3 protein_coding retained_intron MGP_CASTEiJ_T0074677.1 MGP_CASTEiJ_G0029204.1 mouse_genomes_project 5 126766352 126772573 + Gtf2h3 protein_coding retained_intron MGP_CASTEiJ_T0074678.1 MGP_CASTEiJ_G0029204.1 mouse_genomes_project 5 126770246 126771588 + Gtf2h3 protein_coding retained_intron MGP_CASTEiJ_T0011269.1 MGP_CASTEiJ_G0009457.1 mouse_genomes_project 5 100352499 100352568 + Gm27997 misc_RNA misc_RNA MGP_CASTEiJ_T0070138.1 MGP_CASTEiJ_G0028371.1 mouse_genomes_project 5 451783 467899 + MGP_CASTEiJ_P0070138 1700109H08Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070139.1 MGP_CASTEiJ_G0028371.1 mouse_genomes_project 5 451890 467914 + MGP_CASTEiJ_P0070139 1700109H08Rik protein_coding protein_coding MGP_CASTEiJ_T0070140.1 MGP_CASTEiJ_G0028371.1 mouse_genomes_project 5 459231 467914 + MGP_CASTEiJ_P0070140 1700109H08Rik protein_coding protein_coding MGP_CASTEiJ_T0070141.1 MGP_CASTEiJ_G0028371.1 mouse_genomes_project 5 461783 464000 + 1700109H08Rik protein_coding retained_intron MGP_CASTEiJ_T0070142.1 MGP_CASTEiJ_G0028371.1 mouse_genomes_project 5 464048 467902 + MGP_CASTEiJ_P0070142 1700109H08Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0004617.1 MGP_CASTEiJ_G0003998.1 mouse_genomes_project 5 99860508 99863196 + antisense antisense MGP_CASTEiJ_T0014364.1 MGP_CASTEiJ_G0012527.1 mouse_genomes_project 5 11057526 11058037 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073178.1 MGP_CASTEiJ_G0028938.1 mouse_genomes_project 5 105990341 106090445 + MGP_CASTEiJ_P0073178 Lrrc8c protein_coding protein_coding MGP_CASTEiJ_T0073179.1 MGP_CASTEiJ_G0028938.1 mouse_genomes_project 5 105990369 106056127 + MGP_CASTEiJ_P0073179 Lrrc8c protein_coding protein_coding MGP_CASTEiJ_T0073180.1 MGP_CASTEiJ_G0028938.1 mouse_genomes_project 5 105990426 106015383 + Lrrc8c protein_coding retained_intron MGP_CASTEiJ_T0073181.1 MGP_CASTEiJ_G0028938.1 mouse_genomes_project 5 106030454 106084257 + MGP_CASTEiJ_P0073181 Lrrc8c protein_coding protein_coding MGP_CASTEiJ_T0074006.1 MGP_CASTEiJ_G0029092.1 mouse_genomes_project 5 118821628 118832404 - MGP_CASTEiJ_P0074006 Rfc5 protein_coding protein_coding MGP_CASTEiJ_T0074007.1 MGP_CASTEiJ_G0029092.1 mouse_genomes_project 5 118821785 118832379 - Rfc5 protein_coding retained_intron MGP_CASTEiJ_T0074008.1 MGP_CASTEiJ_G0029092.1 mouse_genomes_project 5 118822971 118824206 - Rfc5 protein_coding retained_intron MGP_CASTEiJ_T0074009.1 MGP_CASTEiJ_G0029092.1 mouse_genomes_project 5 118823195 118823571 - Rfc5 protein_coding retained_intron MGP_CASTEiJ_T0074010.1 MGP_CASTEiJ_G0029092.1 mouse_genomes_project 5 118825074 118830187 - Rfc5 protein_coding retained_intron MGP_CASTEiJ_T0074011.1 MGP_CASTEiJ_G0029092.1 mouse_genomes_project 5 118829636 118832402 - MGP_CASTEiJ_P0074011 Rfc5 protein_coding protein_coding MGP_CASTEiJ_T0101133.1 MGP_CASTEiJ_G0038046.1 mouse_genomes_project 5 99526778 99526910 + Gm25969 snoRNA snoRNA MGP_CASTEiJ_T0071475.1 MGP_CASTEiJ_G0028591.1 mouse_genomes_project 5 33254928 33289029 - MGP_CASTEiJ_P0071475 Sh3tc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071476.1 MGP_CASTEiJ_G0028591.1 mouse_genomes_project 5 33254928 33286957 - MGP_CASTEiJ_P0071476 Sh3tc1 protein_coding protein_coding MGP_CASTEiJ_T0071477.1 MGP_CASTEiJ_G0028591.1 mouse_genomes_project 5 33254936 33287164 - MGP_CASTEiJ_P0071477 Sh3tc1 protein_coding protein_coding MGP_CASTEiJ_T0071478.1 MGP_CASTEiJ_G0028591.1 mouse_genomes_project 5 33254937 33281826 - MGP_CASTEiJ_P0071478 Sh3tc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071479.1 MGP_CASTEiJ_G0028591.1 mouse_genomes_project 5 33254939 33297891 - MGP_CASTEiJ_P0071479 Sh3tc1 protein_coding protein_coding MGP_CASTEiJ_T0071480.1 MGP_CASTEiJ_G0028591.1 mouse_genomes_project 5 33254939 33274034 - MGP_CASTEiJ_P0071480 Sh3tc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071481.1 MGP_CASTEiJ_G0028591.1 mouse_genomes_project 5 33254941 33277051 - Sh3tc1 protein_coding retained_intron MGP_CASTEiJ_T0071482.1 MGP_CASTEiJ_G0028591.1 mouse_genomes_project 5 33280946 33286900 - Sh3tc1 protein_coding processed_transcript MGP_CASTEiJ_T0001737.1 MGP_CASTEiJ_G0001660.1 mouse_genomes_project 5 123047158 123050416 - TEC TEC MGP_CASTEiJ_T0007966.1 MGP_CASTEiJ_G0006508.1 mouse_genomes_project 5 74057134 74074657 + Gm6116 lincRNA lincRNA MGP_CASTEiJ_T0073617.1 MGP_CASTEiJ_G0029019.1 mouse_genomes_project 5 114095061 114186795 - MGP_CASTEiJ_P0073617 2900026A02Rik protein_coding protein_coding MGP_CASTEiJ_T0073618.1 MGP_CASTEiJ_G0029019.1 mouse_genomes_project 5 114097375 114153484 - MGP_CASTEiJ_P0073618 2900026A02Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0101113.1 MGP_CASTEiJ_G0038026.1 mouse_genomes_project 5 55346959 55347082 + Gm24902 snoRNA snoRNA MGP_CASTEiJ_T0010424.1 MGP_CASTEiJ_G0008612.1 mouse_genomes_project 5 138740124 138740202 - Gm23268 miRNA miRNA MGP_CASTEiJ_T0071624.1 MGP_CASTEiJ_G0028616.1 mouse_genomes_project 5 35890718 35900958 + MGP_CASTEiJ_P0071624 Lyar protein_coding protein_coding MGP_CASTEiJ_T0071625.1 MGP_CASTEiJ_G0028616.1 mouse_genomes_project 5 35890756 35898145 + MGP_CASTEiJ_P0071625 Lyar protein_coding protein_coding MGP_CASTEiJ_T0071626.1 MGP_CASTEiJ_G0028616.1 mouse_genomes_project 5 35890763 35900959 + MGP_CASTEiJ_P0071626 Lyar protein_coding protein_coding MGP_CASTEiJ_T0071627.1 MGP_CASTEiJ_G0028616.1 mouse_genomes_project 5 35890765 35901243 + MGP_CASTEiJ_P0071627 Lyar protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071628.1 MGP_CASTEiJ_G0028616.1 mouse_genomes_project 5 35890767 35906323 + MGP_CASTEiJ_P0071628 Lyar protein_coding protein_coding MGP_CASTEiJ_T0071629.1 MGP_CASTEiJ_G0028616.1 mouse_genomes_project 5 35890786 35896150 + MGP_CASTEiJ_P0071629 Lyar protein_coding protein_coding MGP_CASTEiJ_T0071630.1 MGP_CASTEiJ_G0028616.1 mouse_genomes_project 5 35890790 35898329 + MGP_CASTEiJ_P0071630 Lyar protein_coding protein_coding MGP_CASTEiJ_T0071631.1 MGP_CASTEiJ_G0028616.1 mouse_genomes_project 5 35890864 35906323 + MGP_CASTEiJ_P0071631 Lyar protein_coding unknown_likely_coding MGP_CASTEiJ_T0071632.1 MGP_CASTEiJ_G0028616.1 mouse_genomes_project 5 35893187 35900938 + MGP_CASTEiJ_P0071632 Lyar protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071633.1 MGP_CASTEiJ_G0028616.1 mouse_genomes_project 5 35894874 35896692 + Lyar protein_coding retained_intron MGP_CASTEiJ_T0004520.1 MGP_CASTEiJ_G0003924.1 mouse_genomes_project 5 25656101 26124694 + antisense antisense MGP_CASTEiJ_T0004521.1 MGP_CASTEiJ_G0003924.1 mouse_genomes_project 5 25664879 25899401 + antisense antisense MGP_CASTEiJ_T0008028.1 MGP_CASTEiJ_G0006558.1 mouse_genomes_project 5 101601800 101604650 + Gm20484 lincRNA lincRNA MGP_CASTEiJ_T0004714.1 MGP_CASTEiJ_G0004067.1 mouse_genomes_project 5 134624148 134634216 + Gm42439 antisense antisense MGP_CASTEiJ_T0001467.1 MGP_CASTEiJ_G0001393.1 mouse_genomes_project 5 41229335 41233602 + TEC TEC MGP_CASTEiJ_T0099863.1 MGP_CASTEiJ_G0036776.1 mouse_genomes_project 5 19605004 19605111 - Gm22887 snRNA snRNA MGP_CASTEiJ_T0001479.1 MGP_CASTEiJ_G0001405.1 mouse_genomes_project 5 42270727 42271621 - TEC TEC MGP_CASTEiJ_T0073420.1 MGP_CASTEiJ_G0028983.1 mouse_genomes_project 5 110923268 110942848 + MGP_CASTEiJ_P0073420 Zfp605 protein_coding protein_coding MGP_CASTEiJ_T0073421.1 MGP_CASTEiJ_G0028983.1 mouse_genomes_project 5 110923512 110940497 + Zfp605 protein_coding processed_transcript MGP_CASTEiJ_T0073422.1 MGP_CASTEiJ_G0028983.1 mouse_genomes_project 5 110923527 110940455 + MGP_CASTEiJ_P0073422 Zfp605 protein_coding protein_coding MGP_CASTEiJ_T0073423.1 MGP_CASTEiJ_G0028983.1 mouse_genomes_project 5 110925222 110942139 + MGP_CASTEiJ_P0073423 Zfp605 protein_coding protein_coding MGP_CASTEiJ_T0004604.1 MGP_CASTEiJ_G0003992.1 mouse_genomes_project 5 96149561 96150910 - Gm33050 antisense antisense MGP_CASTEiJ_T0099915.1 MGP_CASTEiJ_G0036828.1 mouse_genomes_project 5 116760676 116760817 + Gm24407 snRNA snRNA MGP_CASTEiJ_T0001747.1 MGP_CASTEiJ_G0001670.1 mouse_genomes_project 5 124506331 124509784 - TEC TEC MGP_CASTEiJ_T0001824.1 MGP_CASTEiJ_G0001745.1 mouse_genomes_project 5 143435033 143437527 - TEC TEC MGP_CASTEiJ_T0001656.1 MGP_CASTEiJ_G0001579.1 mouse_genomes_project 5 93314455 93315052 - TEC TEC MGP_CASTEiJ_T0001780.1 MGP_CASTEiJ_G0001702.1 mouse_genomes_project 5 132746457 132749292 + TEC TEC MGP_CASTEiJ_T0014678.1 MGP_CASTEiJ_G0012841.1 mouse_genomes_project 5 149935986 149936309 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004536.1 MGP_CASTEiJ_G0003937.1 mouse_genomes_project 5 32168874 32203268 - Gm42560 antisense antisense MGP_CASTEiJ_T0073989.1 MGP_CASTEiJ_G0029089.1 mouse_genomes_project 5 118726255 118731465 - MGP_CASTEiJ_P0073989 Pebp1 protein_coding protein_coding MGP_CASTEiJ_T0073990.1 MGP_CASTEiJ_G0029089.1 mouse_genomes_project 5 118726744 118731423 - MGP_CASTEiJ_P0073990 Pebp1 protein_coding protein_coding MGP_CASTEiJ_T0073991.1 MGP_CASTEiJ_G0029089.1 mouse_genomes_project 5 118726947 118731408 - MGP_CASTEiJ_P0073991 Pebp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073992.1 MGP_CASTEiJ_G0029089.1 mouse_genomes_project 5 118729632 118731365 - Pebp1 protein_coding retained_intron MGP_CASTEiJ_T0008033.1 MGP_CASTEiJ_G0006562.1 mouse_genomes_project 5 103274796 103348035 - 4930429D17Rik lincRNA lincRNA MGP_CASTEiJ_T0010442.1 MGP_CASTEiJ_G0008630.1 mouse_genomes_project 5 151473327 151473437 - Mir7k miRNA miRNA MGP_CASTEiJ_T0001449.1 MGP_CASTEiJ_G0001375.1 mouse_genomes_project 5 31187392 31191012 - TEC TEC MGP_CASTEiJ_T0070599.1 MGP_CASTEiJ_G0028449.1 mouse_genomes_project 5 21512725 21518865 + MGP_CASTEiJ_P0070599 Abcb8 protein_coding protein_coding MGP_CASTEiJ_T0070600.1 MGP_CASTEiJ_G0028449.1 mouse_genomes_project 5 21512738 21528672 + MGP_CASTEiJ_P0070600 Abcb8 protein_coding protein_coding MGP_CASTEiJ_T0070601.1 MGP_CASTEiJ_G0028449.1 mouse_genomes_project 5 21513210 21528563 + MGP_CASTEiJ_P0070601 Abcb8 protein_coding protein_coding MGP_CASTEiJ_T0070602.1 MGP_CASTEiJ_G0028449.1 mouse_genomes_project 5 21513451 21522588 + Abcb8 protein_coding processed_transcript MGP_CASTEiJ_T0070603.1 MGP_CASTEiJ_G0028449.1 mouse_genomes_project 5 21513463 21519308 + Abcb8 protein_coding retained_intron MGP_CASTEiJ_T0070604.1 MGP_CASTEiJ_G0028449.1 mouse_genomes_project 5 21519240 21528565 + MGP_CASTEiJ_P0070604 Abcb8 protein_coding protein_coding MGP_CASTEiJ_T0070605.1 MGP_CASTEiJ_G0028449.1 mouse_genomes_project 5 21520896 21525324 + Abcb8 protein_coding retained_intron MGP_CASTEiJ_T0070606.1 MGP_CASTEiJ_G0028449.1 mouse_genomes_project 5 21524427 21528564 + Abcb8 protein_coding retained_intron MGP_CASTEiJ_T0070607.1 MGP_CASTEiJ_G0028449.1 mouse_genomes_project 5 21525020 21528541 + MGP_CASTEiJ_P0070607 Abcb8 protein_coding protein_coding MGP_CASTEiJ_T0017395.1 MGP_CASTEiJ_G0014913.1 mouse_genomes_project 5 48356002 48457257 - Gm36814 processed_transcript lincRNA MGP_CASTEiJ_T0017396.1 MGP_CASTEiJ_G0014913.1 mouse_genomes_project 5 48437618 48456302 - Gm36814 processed_transcript retained_intron MGP_CASTEiJ_T0073106.1 MGP_CASTEiJ_G0028910.1 mouse_genomes_project 5 103483949 103605693 + Ptpn13 protein_coding retained_intron MGP_CASTEiJ_T0073107.1 MGP_CASTEiJ_G0028910.1 mouse_genomes_project 5 103483997 103594242 + MGP_CASTEiJ_P0073107 Ptpn13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073108.1 MGP_CASTEiJ_G0028910.1 mouse_genomes_project 5 103484013 103566472 + Ptpn13 protein_coding retained_intron MGP_CASTEiJ_T0073109.1 MGP_CASTEiJ_G0028910.1 mouse_genomes_project 5 103484258 103665319 + MGP_CASTEiJ_P0073109 Ptpn13 protein_coding protein_coding MGP_CASTEiJ_T0073110.1 MGP_CASTEiJ_G0028910.1 mouse_genomes_project 5 103594067 103607598 + Ptpn13 protein_coding retained_intron MGP_CASTEiJ_T0071548.1 MGP_CASTEiJ_G0028604.1 mouse_genomes_project 5 34480874 34576170 + MGP_CASTEiJ_P0071548 Ppp2r2c protein_coding protein_coding MGP_CASTEiJ_T0071549.1 MGP_CASTEiJ_G0028604.1 mouse_genomes_project 5 34481024 34551817 + MGP_CASTEiJ_P0071549 Ppp2r2c protein_coding protein_coding MGP_CASTEiJ_T0071550.1 MGP_CASTEiJ_G0028604.1 mouse_genomes_project 5 34559833 34560591 + Ppp2r2c protein_coding processed_transcript MGP_CASTEiJ_T0007885.1 MGP_CASTEiJ_G0006448.1 mouse_genomes_project 5 30735276 30754523 - Gm20465 lincRNA lincRNA MGP_CASTEiJ_T0001705.1 MGP_CASTEiJ_G0001628.1 mouse_genomes_project 5 114190158 114191076 - TEC TEC MGP_CASTEiJ_T0004583.1 MGP_CASTEiJ_G0003974.1 mouse_genomes_project 5 71235942 71286463 + Gm20647 antisense antisense MGP_CASTEiJ_T0076080.1 MGP_CASTEiJ_G0029478.1 mouse_genomes_project 5 150992301 150994964 + MGP_CASTEiJ_P0076080 Rasl11a protein_coding protein_coding MGP_CASTEiJ_T0076081.1 MGP_CASTEiJ_G0029478.1 mouse_genomes_project 5 150992979 150994611 + Rasl11a protein_coding retained_intron MGP_CASTEiJ_T0072545.1 MGP_CASTEiJ_G0028770.1 mouse_genomes_project 5 83750612 84152563 - MGP_CASTEiJ_P0072545 Epha5 protein_coding protein_coding MGP_CASTEiJ_T0072546.1 MGP_CASTEiJ_G0028770.1 mouse_genomes_project 5 83753643 84152451 - MGP_CASTEiJ_P0072546 Epha5 protein_coding protein_coding MGP_CASTEiJ_T0072547.1 MGP_CASTEiJ_G0028770.1 mouse_genomes_project 5 83753643 84152451 - MGP_CASTEiJ_P0072547 Epha5 protein_coding protein_coding MGP_CASTEiJ_T0072548.1 MGP_CASTEiJ_G0028770.1 mouse_genomes_project 5 83761327 84152995 - MGP_CASTEiJ_P0072548 Epha5 protein_coding protein_coding MGP_CASTEiJ_T0072549.1 MGP_CASTEiJ_G0028770.1 mouse_genomes_project 5 83761327 84152451 - MGP_CASTEiJ_P0072549 Epha5 protein_coding protein_coding MGP_CASTEiJ_T0072550.1 MGP_CASTEiJ_G0028770.1 mouse_genomes_project 5 83761327 84152451 - MGP_CASTEiJ_P0072550 Epha5 protein_coding protein_coding MGP_CASTEiJ_T0072551.1 MGP_CASTEiJ_G0028770.1 mouse_genomes_project 5 83812817 84152563 - Epha5 protein_coding retained_intron MGP_CASTEiJ_T0072552.1 MGP_CASTEiJ_G0028770.1 mouse_genomes_project 5 83863313 84152563 - Epha5 protein_coding retained_intron MGP_CASTEiJ_T0072553.1 MGP_CASTEiJ_G0028770.1 mouse_genomes_project 5 83952477 84153014 - Epha5 protein_coding retained_intron MGP_CASTEiJ_T0072554.1 MGP_CASTEiJ_G0028770.1 mouse_genomes_project 5 84060819 84153014 - Epha5 protein_coding retained_intron MGP_CASTEiJ_T0072555.1 MGP_CASTEiJ_G0028770.1 mouse_genomes_project 5 84090928 84094631 - Epha5 protein_coding retained_intron MGP_CASTEiJ_T0072030.1 MGP_CASTEiJ_G0028688.1 mouse_genomes_project 5 64102042 64150345 - MGP_CASTEiJ_P0072030 Smim14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0072031.1 MGP_CASTEiJ_G0028688.1 mouse_genomes_project 5 64102046 64150821 - MGP_CASTEiJ_P0072031 Smim14 protein_coding protein_coding MGP_CASTEiJ_T0072032.1 MGP_CASTEiJ_G0028688.1 mouse_genomes_project 5 64104920 64150481 - MGP_CASTEiJ_P0072032 Smim14 protein_coding protein_coding MGP_CASTEiJ_T0072033.1 MGP_CASTEiJ_G0028688.1 mouse_genomes_project 5 64104921 64150292 - MGP_CASTEiJ_P0072033 Smim14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072034.1 MGP_CASTEiJ_G0028688.1 mouse_genomes_project 5 64105044 64117086 - Smim14 protein_coding retained_intron MGP_CASTEiJ_T0072035.1 MGP_CASTEiJ_G0028688.1 mouse_genomes_project 5 64107954 64113467 - Smim14 protein_coding retained_intron MGP_CASTEiJ_T0072036.1 MGP_CASTEiJ_G0028688.1 mouse_genomes_project 5 64116333 64199370 - MGP_CASTEiJ_P0072036 Smim14 protein_coding protein_coding MGP_CASTEiJ_T0072037.1 MGP_CASTEiJ_G0028688.1 mouse_genomes_project 5 64123883 64199315 - Smim14 protein_coding retained_intron MGP_CASTEiJ_T0072038.1 MGP_CASTEiJ_G0028688.1 mouse_genomes_project 5 64125832 64150302 - Smim14 protein_coding retained_intron MGP_CASTEiJ_T0072039.1 MGP_CASTEiJ_G0028688.1 mouse_genomes_project 5 64147355 64150821 - Smim14 protein_coding retained_intron MGP_CASTEiJ_T0001524.1 MGP_CASTEiJ_G0001449.1 mouse_genomes_project 5 47855477 47856612 - TEC TEC MGP_CASTEiJ_T0075804.1 MGP_CASTEiJ_G0029419.1 mouse_genomes_project 5 146355001 146426702 - MGP_CASTEiJ_P0075804 protein_coding protein_coding MGP_CASTEiJ_T0075805.1 MGP_CASTEiJ_G0029419.1 mouse_genomes_project 5 146362405 146367029 - protein_coding processed_transcript MGP_CASTEiJ_T0075806.1 MGP_CASTEiJ_G0029419.1 mouse_genomes_project 5 146363260 146367571 - protein_coding retained_intron MGP_CASTEiJ_T0075807.1 MGP_CASTEiJ_G0029419.1 mouse_genomes_project 5 146386447 146462878 - MGP_CASTEiJ_P0075807 protein_coding protein_coding MGP_CASTEiJ_T0075808.1 MGP_CASTEiJ_G0029419.1 mouse_genomes_project 5 146395929 146397636 - protein_coding retained_intron MGP_CASTEiJ_T0075809.1 MGP_CASTEiJ_G0029419.1 mouse_genomes_project 5 146426487 146442125 - protein_coding processed_transcript MGP_CASTEiJ_T0075810.1 MGP_CASTEiJ_G0029419.1 mouse_genomes_project 5 146433024 146462596 - MGP_CASTEiJ_P0075810 protein_coding protein_coding MGP_CASTEiJ_T0070396.1 MGP_CASTEiJ_G0028410.1 mouse_genomes_project 5 11738486 12039953 + MGP_CASTEiJ_P0070396 Pclo protein_coding protein_coding MGP_CASTEiJ_T0070397.1 MGP_CASTEiJ_G0028410.1 mouse_genomes_project 5 11738561 12125984 + Pclo protein_coding retained_intron MGP_CASTEiJ_T0070398.1 MGP_CASTEiJ_G0028410.1 mouse_genomes_project 5 11907447 12039964 + MGP_CASTEiJ_P0070398 Pclo protein_coding protein_coding MGP_CASTEiJ_T0070399.1 MGP_CASTEiJ_G0028410.1 mouse_genomes_project 5 12047862 12129339 + MGP_CASTEiJ_P0070399 Pclo protein_coding unknown_likely_coding MGP_CASTEiJ_T0014379.1 MGP_CASTEiJ_G0012542.1 mouse_genomes_project 5 18235897 18236149 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072574.1 MGP_CASTEiJ_G0028776.1 mouse_genomes_project 5 86109941 86135117 - MGP_CASTEiJ_P0072574 Tmprss11d protein_coding protein_coding MGP_CASTEiJ_T0072575.1 MGP_CASTEiJ_G0028776.1 mouse_genomes_project 5 86109941 86181350 - MGP_CASTEiJ_P0072575 Tmprss11d protein_coding protein_coding MGP_CASTEiJ_T0098974.1 MGP_CASTEiJ_G0035898.1 mouse_genomes_project 5 132237998 132239351 + Gm15903 sense_intronic sense_intronic MGP_CASTEiJ_T0098975.1 MGP_CASTEiJ_G0035898.1 mouse_genomes_project 5 132239140 132242671 + Gm15903 sense_intronic sense_intronic MGP_CASTEiJ_T0004758.1 MGP_CASTEiJ_G0004098.1 mouse_genomes_project 5 153820243 153821985 - Gm43151 antisense antisense MGP_CASTEiJ_T0014447.1 MGP_CASTEiJ_G0012610.1 mouse_genomes_project 5 37118276 37119175 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098618.1 MGP_CASTEiJ_G0035549.1 mouse_genomes_project 5 118629311 118629432 + n-R5s174 rRNA rRNA MGP_CASTEiJ_T0007927.1 MGP_CASTEiJ_G0006477.1 mouse_genomes_project 5 50208795 50227019 - C130083M11Rik lincRNA lincRNA MGP_CASTEiJ_T0014563.1 MGP_CASTEiJ_G0012726.1 mouse_genomes_project 5 93421367 93421699 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072604.1 MGP_CASTEiJ_G0028788.1 mouse_genomes_project 5 87018411 87036318 - MGP_CASTEiJ_P0072604 protein_coding protein_coding MGP_CASTEiJ_T0074694.1 MGP_CASTEiJ_G0029208.1 mouse_genomes_project 5 126996896 127022797 + MGP_CASTEiJ_P0074694 Zfp664 protein_coding protein_coding MGP_CASTEiJ_T0074695.1 MGP_CASTEiJ_G0029208.1 mouse_genomes_project 5 126996969 127040994 + Zfp664 protein_coding processed_transcript MGP_CASTEiJ_T0074696.1 MGP_CASTEiJ_G0029208.1 mouse_genomes_project 5 126997244 127019476 + Zfp664 protein_coding processed_transcript MGP_CASTEiJ_T0074697.1 MGP_CASTEiJ_G0029208.1 mouse_genomes_project 5 127008368 127010524 + Zfp664 protein_coding processed_transcript MGP_CASTEiJ_T0074698.1 MGP_CASTEiJ_G0029208.1 mouse_genomes_project 5 127010196 127019646 + Zfp664 protein_coding processed_transcript MGP_CASTEiJ_T0074699.1 MGP_CASTEiJ_G0029208.1 mouse_genomes_project 5 127018737 127022797 + Zfp664 protein_coding processed_transcript MGP_CASTEiJ_T0072923.1 MGP_CASTEiJ_G0028873.1 mouse_genomes_project 5 95910486 95968834 + MGP_CASTEiJ_P0072923 Mrpl1 protein_coding protein_coding MGP_CASTEiJ_T0072924.1 MGP_CASTEiJ_G0028873.1 mouse_genomes_project 5 95911108 95968836 + MGP_CASTEiJ_P0072924 Mrpl1 protein_coding protein_coding MGP_CASTEiJ_T0072925.1 MGP_CASTEiJ_G0028873.1 mouse_genomes_project 5 95911137 95941517 + MGP_CASTEiJ_P0072925 Mrpl1 protein_coding protein_coding MGP_CASTEiJ_T0074179.1 MGP_CASTEiJ_G0029130.1 mouse_genomes_project 5 123345765 123421923 + MGP_CASTEiJ_P0074179 Tmem116 protein_coding protein_coding MGP_CASTEiJ_T0074180.1 MGP_CASTEiJ_G0029130.1 mouse_genomes_project 5 123346446 123390364 + MGP_CASTEiJ_P0074180 Tmem116 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074181.1 MGP_CASTEiJ_G0029130.1 mouse_genomes_project 5 123346446 123391336 + MGP_CASTEiJ_P0074181 Tmem116 protein_coding protein_coding MGP_CASTEiJ_T0074182.1 MGP_CASTEiJ_G0029130.1 mouse_genomes_project 5 123346484 123376575 + MGP_CASTEiJ_P0074182 Tmem116 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074183.1 MGP_CASTEiJ_G0029130.1 mouse_genomes_project 5 123346565 123376575 + Tmem116 protein_coding processed_transcript MGP_CASTEiJ_T0074184.1 MGP_CASTEiJ_G0029130.1 mouse_genomes_project 5 123346568 123391343 + MGP_CASTEiJ_P0074184 Tmem116 protein_coding protein_coding MGP_CASTEiJ_T0074185.1 MGP_CASTEiJ_G0029130.1 mouse_genomes_project 5 123347168 123415619 + MGP_CASTEiJ_P0074185 Tmem116 protein_coding protein_coding MGP_CASTEiJ_T0074186.1 MGP_CASTEiJ_G0029130.1 mouse_genomes_project 5 123358282 123391316 + MGP_CASTEiJ_P0074186 Tmem116 protein_coding protein_coding MGP_CASTEiJ_T0074187.1 MGP_CASTEiJ_G0029130.1 mouse_genomes_project 5 123358282 123391343 + MGP_CASTEiJ_P0074187 Tmem116 protein_coding protein_coding MGP_CASTEiJ_T0074188.1 MGP_CASTEiJ_G0029130.1 mouse_genomes_project 5 123358862 123390168 + MGP_CASTEiJ_P0074188 Tmem116 protein_coding protein_coding MGP_CASTEiJ_T0073524.1 MGP_CASTEiJ_G0028999.1 mouse_genomes_project 5 111680425 111693621 - MGP_CASTEiJ_P0073524 Hscb protein_coding protein_coding MGP_CASTEiJ_T0073525.1 MGP_CASTEiJ_G0028999.1 mouse_genomes_project 5 111680435 111693419 - MGP_CASTEiJ_P0073525 Hscb protein_coding protein_coding MGP_CASTEiJ_T0073526.1 MGP_CASTEiJ_G0028999.1 mouse_genomes_project 5 111680435 111689820 - MGP_CASTEiJ_P0073526 Hscb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073527.1 MGP_CASTEiJ_G0028999.1 mouse_genomes_project 5 111680436 111688394 - Hscb protein_coding retained_intron MGP_CASTEiJ_T0008247.1 MGP_CASTEiJ_G0006705.1 mouse_genomes_project 5 153494970 153566095 - 5730422E09Rik lincRNA lincRNA MGP_CASTEiJ_T0008248.1 MGP_CASTEiJ_G0006705.1 mouse_genomes_project 5 153494974 153499187 - 5730422E09Rik lincRNA lincRNA MGP_CASTEiJ_T0014617.1 MGP_CASTEiJ_G0012780.1 mouse_genomes_project 5 116056405 116056750 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101131.1 MGP_CASTEiJ_G0038044.1 mouse_genomes_project 5 93292155 93292291 + Gm22915 snoRNA snoRNA MGP_CASTEiJ_T0014510.1 MGP_CASTEiJ_G0012673.1 mouse_genomes_project 5 68793734 68794018 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070666.1 MGP_CASTEiJ_G0028459.1 mouse_genomes_project 5 21701862 21714681 - MGP_CASTEiJ_P0070666 Abcf2 protein_coding protein_coding MGP_CASTEiJ_T0075334.1 MGP_CASTEiJ_G0029323.1 mouse_genomes_project 5 140245692 140253399 - MGP_CASTEiJ_P0075334 protein_coding protein_coding MGP_CASTEiJ_T0075335.1 MGP_CASTEiJ_G0029323.1 mouse_genomes_project 5 140245702 140249311 - MGP_CASTEiJ_P0075335 protein_coding protein_coding MGP_CASTEiJ_T0101106.1 MGP_CASTEiJ_G0038019.1 mouse_genomes_project 5 20769237 20769306 - Snord93 snoRNA snoRNA MGP_CASTEiJ_T0007840.1 MGP_CASTEiJ_G0006419.1 mouse_genomes_project 5 2579490 2582647 + lincRNA lincRNA MGP_CASTEiJ_T0001769.1 MGP_CASTEiJ_G0001691.1 mouse_genomes_project 5 129942266 129943041 + TEC TEC MGP_CASTEiJ_T0101122.1 MGP_CASTEiJ_G0038035.1 mouse_genomes_project 5 73142139 73142260 + Snora26 snoRNA snoRNA MGP_CASTEiJ_T0008229.1 MGP_CASTEiJ_G0006689.1 mouse_genomes_project 5 150701483 150715197 - Gm34333 lincRNA lincRNA MGP_CASTEiJ_T0014546.1 MGP_CASTEiJ_G0012709.1 mouse_genomes_project 5 88036282 88038145 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070753.1 MGP_CASTEiJ_G0028479.1 mouse_genomes_project 5 25404717 25445100 - MGP_CASTEiJ_P0070753 protein_coding protein_coding MGP_CASTEiJ_T0070754.1 MGP_CASTEiJ_G0028479.1 mouse_genomes_project 5 25406347 25413827 - MGP_CASTEiJ_P0070754 protein_coding protein_coding MGP_CASTEiJ_T0070755.1 MGP_CASTEiJ_G0028479.1 mouse_genomes_project 5 25409332 25436953 - MGP_CASTEiJ_P0070755 protein_coding protein_coding MGP_CASTEiJ_T0070756.1 MGP_CASTEiJ_G0028479.1 mouse_genomes_project 5 25409640 25413973 - MGP_CASTEiJ_P0070756 protein_coding protein_coding MGP_CASTEiJ_T0070757.1 MGP_CASTEiJ_G0028479.1 mouse_genomes_project 5 25413055 25414168 - MGP_CASTEiJ_P0070757 protein_coding protein_coding MGP_CASTEiJ_T0075777.1 MGP_CASTEiJ_G0029412.1 mouse_genomes_project 5 145991690 146015073 + MGP_CASTEiJ_P0075777 Foxk1 protein_coding protein_coding MGP_CASTEiJ_T0075778.1 MGP_CASTEiJ_G0029412.1 mouse_genomes_project 5 145991693 146058835 + MGP_CASTEiJ_P0075778 Foxk1 protein_coding protein_coding MGP_CASTEiJ_T0073177.1 MGP_CASTEiJ_G0028937.1 mouse_genomes_project 5 105892009 105960363 + MGP_CASTEiJ_P0073177 Lrrc8b protein_coding protein_coding MGP_CASTEiJ_T0101126.1 MGP_CASTEiJ_G0038039.1 mouse_genomes_project 5 83401556 83401684 - Gm24792 snoRNA snoRNA MGP_CASTEiJ_T0071974.1 MGP_CASTEiJ_G0028676.1 mouse_genomes_project 5 63542484 63551654 - MGP_CASTEiJ_P0071974 Tlr1 protein_coding protein_coding MGP_CASTEiJ_T0071975.1 MGP_CASTEiJ_G0028676.1 mouse_genomes_project 5 63551043 63551656 - Tlr1 protein_coding processed_transcript MGP_CASTEiJ_T0070815.1 MGP_CASTEiJ_G0028491.1 mouse_genomes_project 5 27366914 27369376 - MGP_CASTEiJ_P0070815 3110082J24Rik protein_coding protein_coding MGP_CASTEiJ_T0070816.1 MGP_CASTEiJ_G0028491.1 mouse_genomes_project 5 27367218 27368646 - MGP_CASTEiJ_P0070816 3110082J24Rik protein_coding protein_coding MGP_CASTEiJ_T0014592.1 MGP_CASTEiJ_G0012755.1 mouse_genomes_project 5 107302243 107302905 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073619.1 MGP_CASTEiJ_G0029020.1 mouse_genomes_project 5 114254747 114267008 + MGP_CASTEiJ_P0073619 Tmem211 protein_coding protein_coding MGP_CASTEiJ_T0008035.1 MGP_CASTEiJ_G0006564.1 mouse_genomes_project 5 103404556 103407256 - 5430427N15Rik lincRNA lincRNA MGP_CASTEiJ_T0011272.1 MGP_CASTEiJ_G0009460.1 mouse_genomes_project 5 103668709 103669009 + Gm23085 misc_RNA misc_RNA MGP_CASTEiJ_T0098981.1 MGP_CASTEiJ_G0035904.1 mouse_genomes_project 5 148024707 148027988 + Gm15708 sense_intronic sense_intronic MGP_CASTEiJ_T0098982.1 MGP_CASTEiJ_G0035904.1 mouse_genomes_project 5 148026371 148027958 + Gm15708 sense_intronic sense_intronic MGP_CASTEiJ_T0075725.1 MGP_CASTEiJ_G0029400.1 mouse_genomes_project 5 143773408 143824805 - MGP_CASTEiJ_P0075725 Snx8 protein_coding protein_coding MGP_CASTEiJ_T0075726.1 MGP_CASTEiJ_G0029400.1 mouse_genomes_project 5 143773413 143793329 - MGP_CASTEiJ_P0075726 Snx8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075727.1 MGP_CASTEiJ_G0029400.1 mouse_genomes_project 5 143785705 143786464 - Snx8 protein_coding retained_intron MGP_CASTEiJ_T0075728.1 MGP_CASTEiJ_G0029400.1 mouse_genomes_project 5 143786397 143824805 - MGP_CASTEiJ_P0075728 Snx8 protein_coding protein_coding MGP_CASTEiJ_T0073240.1 MGP_CASTEiJ_G0028947.1 mouse_genomes_project 5 107946374 108004506 + MGP_CASTEiJ_P0073240 protein_coding protein_coding MGP_CASTEiJ_T0073241.1 MGP_CASTEiJ_G0028947.1 mouse_genomes_project 5 107946390 107966016 + MGP_CASTEiJ_P0073241 protein_coding protein_coding MGP_CASTEiJ_T0073242.1 MGP_CASTEiJ_G0028947.1 mouse_genomes_project 5 107946407 107957347 + protein_coding processed_transcript MGP_CASTEiJ_T0073243.1 MGP_CASTEiJ_G0028947.1 mouse_genomes_project 5 107986876 108003784 + protein_coding processed_transcript MGP_CASTEiJ_T0001740.1 MGP_CASTEiJ_G0001663.1 mouse_genomes_project 5 123507467 123509709 + TEC TEC MGP_CASTEiJ_T0001640.1 MGP_CASTEiJ_G0001563.1 mouse_genomes_project 5 74896358 74898687 + TEC TEC MGP_CASTEiJ_T0072169.1 MGP_CASTEiJ_G0028705.1 mouse_genomes_project 5 66476783 66708323 - MGP_CASTEiJ_P0072169 Atp8a1 protein_coding protein_coding MGP_CASTEiJ_T0072170.1 MGP_CASTEiJ_G0028705.1 mouse_genomes_project 5 66476783 66708387 - MGP_CASTEiJ_P0072170 Atp8a1 protein_coding protein_coding MGP_CASTEiJ_T0072171.1 MGP_CASTEiJ_G0028705.1 mouse_genomes_project 5 66477802 66708384 - MGP_CASTEiJ_P0072171 Atp8a1 protein_coding protein_coding MGP_CASTEiJ_T0072172.1 MGP_CASTEiJ_G0028705.1 mouse_genomes_project 5 66479217 66708248 - MGP_CASTEiJ_P0072172 Atp8a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072173.1 MGP_CASTEiJ_G0028705.1 mouse_genomes_project 5 66481242 66708163 - MGP_CASTEiJ_P0072173 Atp8a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0072174.1 MGP_CASTEiJ_G0028705.1 mouse_genomes_project 5 66481323 66518754 - Atp8a1 protein_coding processed_transcript MGP_CASTEiJ_T0072175.1 MGP_CASTEiJ_G0028705.1 mouse_genomes_project 5 66542233 66637875 - Atp8a1 protein_coding retained_intron MGP_CASTEiJ_T0072176.1 MGP_CASTEiJ_G0028705.1 mouse_genomes_project 5 66625648 66628180 - Atp8a1 protein_coding retained_intron MGP_CASTEiJ_T0072177.1 MGP_CASTEiJ_G0028705.1 mouse_genomes_project 5 66637283 66675560 - Atp8a1 protein_coding processed_transcript MGP_CASTEiJ_T0072178.1 MGP_CASTEiJ_G0028705.1 mouse_genomes_project 5 66641967 66708384 - MGP_CASTEiJ_P0072178 Atp8a1 protein_coding protein_coding MGP_CASTEiJ_T0072179.1 MGP_CASTEiJ_G0028705.1 mouse_genomes_project 5 66641967 66708384 - MGP_CASTEiJ_P0072179 Atp8a1 protein_coding protein_coding MGP_CASTEiJ_T0072180.1 MGP_CASTEiJ_G0028705.1 mouse_genomes_project 5 66648227 66708382 - Atp8a1 protein_coding retained_intron MGP_CASTEiJ_T0072181.1 MGP_CASTEiJ_G0028705.1 mouse_genomes_project 5 66665813 66669119 - Atp8a1 protein_coding retained_intron MGP_CASTEiJ_T0072182.1 MGP_CASTEiJ_G0028705.1 mouse_genomes_project 5 66672500 66675569 - Atp8a1 protein_coding retained_intron MGP_CASTEiJ_T0072183.1 MGP_CASTEiJ_G0028705.1 mouse_genomes_project 5 66672504 66676182 - MGP_CASTEiJ_P0072183 Atp8a1 protein_coding protein_coding MGP_CASTEiJ_T0017426.1 MGP_CASTEiJ_G0014924.1 mouse_genomes_project 5 107104581 107253058 - Gm28039 processed_transcript processed_transcript MGP_CASTEiJ_T0001474.1 MGP_CASTEiJ_G0001400.1 mouse_genomes_project 5 41836160 41837857 + TEC TEC MGP_CASTEiJ_T0004651.1 MGP_CASTEiJ_G0004024.1 mouse_genomes_project 5 116102126 116108105 - Gm13822 antisense antisense MGP_CASTEiJ_T0098766.1 MGP_CASTEiJ_G0035697.1 mouse_genomes_project 5 92625818 92625966 + Gm26039 scaRNA scaRNA MGP_CASTEiJ_T0071980.1 MGP_CASTEiJ_G0028679.1 mouse_genomes_project 5 63683522 63726450 - Tmem156 protein_coding processed_transcript MGP_CASTEiJ_T0071981.1 MGP_CASTEiJ_G0028679.1 mouse_genomes_project 5 63695716 63726405 - MGP_CASTEiJ_P0071981 Tmem156 protein_coding protein_coding MGP_CASTEiJ_T0071982.1 MGP_CASTEiJ_G0028679.1 mouse_genomes_project 5 63695881 63714939 - MGP_CASTEiJ_P0071982 Tmem156 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071983.1 MGP_CASTEiJ_G0028679.1 mouse_genomes_project 5 63725601 63726446 - Tmem156 protein_coding retained_intron MGP_CASTEiJ_T0070228.1 MGP_CASTEiJ_G0028385.1 mouse_genomes_project 5 2441902 2483014 - MGP_CASTEiJ_P0070228 1700015F17Rik protein_coding protein_coding MGP_CASTEiJ_T0070229.1 MGP_CASTEiJ_G0028385.1 mouse_genomes_project 5 2441902 2467867 - MGP_CASTEiJ_P0070229 1700015F17Rik protein_coding protein_coding MGP_CASTEiJ_T0070230.1 MGP_CASTEiJ_G0028385.1 mouse_genomes_project 5 2441907 2482951 - MGP_CASTEiJ_P0070230 1700015F17Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073925.1 MGP_CASTEiJ_G0029080.1 mouse_genomes_project 5 116939143 117030121 - MGP_CASTEiJ_P0073925 Ccdc64 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073926.1 MGP_CASTEiJ_G0029080.1 mouse_genomes_project 5 116939150 116940769 - Ccdc64 protein_coding retained_intron MGP_CASTEiJ_T0073927.1 MGP_CASTEiJ_G0029080.1 mouse_genomes_project 5 116940241 116943975 - MGP_CASTEiJ_P0073927 Ccdc64 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073928.1 MGP_CASTEiJ_G0029080.1 mouse_genomes_project 5 116940319 117030296 - MGP_CASTEiJ_P0073928 Ccdc64 protein_coding protein_coding MGP_CASTEiJ_T0073929.1 MGP_CASTEiJ_G0029080.1 mouse_genomes_project 5 116942803 116964309 - MGP_CASTEiJ_P0073929 Ccdc64 protein_coding protein_coding MGP_CASTEiJ_T0073930.1 MGP_CASTEiJ_G0029080.1 mouse_genomes_project 5 116952854 116964576 - Ccdc64 protein_coding retained_intron MGP_CASTEiJ_T0073931.1 MGP_CASTEiJ_G0029080.1 mouse_genomes_project 5 116961272 117015174 - Ccdc64 protein_coding processed_transcript MGP_CASTEiJ_T0073932.1 MGP_CASTEiJ_G0029080.1 mouse_genomes_project 5 116964229 117029998 - MGP_CASTEiJ_P0073932 Ccdc64 protein_coding protein_coding MGP_CASTEiJ_T0073933.1 MGP_CASTEiJ_G0029080.1 mouse_genomes_project 5 117023086 117030059 - Ccdc64 protein_coding retained_intron MGP_CASTEiJ_T0076141.1 MGP_CASTEiJ_G0029491.1 mouse_genomes_project 5 152125887 152142219 - MGP_CASTEiJ_P0076141 Slc46a3 protein_coding protein_coding MGP_CASTEiJ_T0076142.1 MGP_CASTEiJ_G0029491.1 mouse_genomes_project 5 152125891 152142219 - MGP_CASTEiJ_P0076142 Slc46a3 protein_coding protein_coding MGP_CASTEiJ_T0076143.1 MGP_CASTEiJ_G0029491.1 mouse_genomes_project 5 152126009 152127319 - Slc46a3 protein_coding retained_intron MGP_CASTEiJ_T0076144.1 MGP_CASTEiJ_G0029491.1 mouse_genomes_project 5 152141285 152142219 - MGP_CASTEiJ_P0076144 Slc46a3 protein_coding protein_coding MGP_CASTEiJ_T0076041.1 MGP_CASTEiJ_G0029467.1 mouse_genomes_project 5 149130291 149136340 + MGP_CASTEiJ_P0076041 Zscan25 protein_coding protein_coding MGP_CASTEiJ_T0076042.1 MGP_CASTEiJ_G0029467.1 mouse_genomes_project 5 149130298 149148630 + MGP_CASTEiJ_P0076042 Zscan25 protein_coding protein_coding MGP_CASTEiJ_T0076043.1 MGP_CASTEiJ_G0029467.1 mouse_genomes_project 5 149133151 149144646 + MGP_CASTEiJ_P0076043 Zscan25 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0017376.1 MGP_CASTEiJ_G0014906.1 mouse_genomes_project 5 20773787 20776564 - processed_transcript processed_transcript MGP_CASTEiJ_T0072786.1 MGP_CASTEiJ_G0028848.1 mouse_genomes_project 5 92103975 92117911 - Rchy1 protein_coding processed_transcript MGP_CASTEiJ_T0072787.1 MGP_CASTEiJ_G0028848.1 mouse_genomes_project 5 92103975 92118424 - MGP_CASTEiJ_P0072787 Rchy1 protein_coding protein_coding MGP_CASTEiJ_T0072788.1 MGP_CASTEiJ_G0028848.1 mouse_genomes_project 5 92104072 92118090 - MGP_CASTEiJ_P0072788 Rchy1 protein_coding protein_coding MGP_CASTEiJ_T0072789.1 MGP_CASTEiJ_G0028848.1 mouse_genomes_project 5 92107280 92109182 - Rchy1 protein_coding retained_intron MGP_CASTEiJ_T0072790.1 MGP_CASTEiJ_G0028848.1 mouse_genomes_project 5 92117036 92118081 - Rchy1 protein_coding retained_intron MGP_CASTEiJ_T0101112.1 MGP_CASTEiJ_G0038025.1 mouse_genomes_project 5 54958193 54958323 + Gm23896 snoRNA snoRNA MGP_CASTEiJ_T0014669.1 MGP_CASTEiJ_G0012832.1 mouse_genomes_project 5 147176652 147177190 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001735.1 MGP_CASTEiJ_G0001658.1 mouse_genomes_project 5 122505624 122506897 + TEC TEC MGP_CASTEiJ_T0004759.1 MGP_CASTEiJ_G0004099.1 mouse_genomes_project 5 153822535 153825944 - Gm43150 antisense antisense MGP_CASTEiJ_T0011274.1 MGP_CASTEiJ_G0009462.1 mouse_genomes_project 5 112149087 112149198 - Gm27602 misc_RNA misc_RNA MGP_CASTEiJ_T0001593.1 MGP_CASTEiJ_G0001517.1 mouse_genomes_project 5 65213082 65215225 - TEC TEC MGP_CASTEiJ_T0001736.1 MGP_CASTEiJ_G0001659.1 mouse_genomes_project 5 122806169 122808461 - TEC TEC MGP_CASTEiJ_T0004592.1 MGP_CASTEiJ_G0003981.1 mouse_genomes_project 5 76376100 76383891 + Hopxos antisense antisense MGP_CASTEiJ_T0071939.1 MGP_CASTEiJ_G0028669.1 mouse_genomes_project 5 61301691 61379702 + MGP_CASTEiJ_P0071939 Dthd1 protein_coding protein_coding MGP_CASTEiJ_T0008225.1 MGP_CASTEiJ_G0006686.1 mouse_genomes_project 5 147520252 147523281 + D130017N08Rik lincRNA lincRNA MGP_CASTEiJ_T0008147.1 MGP_CASTEiJ_G0006638.1 mouse_genomes_project 5 125211294 125213274 + Gm38102 lincRNA lincRNA MGP_CASTEiJ_T0008151.1 MGP_CASTEiJ_G0006638.1 mouse_genomes_project 5 125213104 125215040 + Gm38102 lincRNA lincRNA MGP_CASTEiJ_T0007878.1 MGP_CASTEiJ_G0006444.1 mouse_genomes_project 5 27238021 27250627 - Gm42806 lincRNA lincRNA MGP_CASTEiJ_T0007879.1 MGP_CASTEiJ_G0006444.1 mouse_genomes_project 5 27245504 27249641 - Gm42806 lincRNA lincRNA MGP_CASTEiJ_T0014677.1 MGP_CASTEiJ_G0012840.1 mouse_genomes_project 5 149289394 149289587 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076155.1 MGP_CASTEiJ_G0029493.1 mouse_genomes_project 5 152598299 152674235 - MGP_CASTEiJ_P0076155 Slc7a1 protein_coding protein_coding MGP_CASTEiJ_T0076156.1 MGP_CASTEiJ_G0029493.1 mouse_genomes_project 5 152599613 152625460 - MGP_CASTEiJ_P0076156 Slc7a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076157.1 MGP_CASTEiJ_G0029493.1 mouse_genomes_project 5 152606846 152667193 - MGP_CASTEiJ_P0076157 Slc7a1 protein_coding protein_coding MGP_CASTEiJ_T0076158.1 MGP_CASTEiJ_G0029493.1 mouse_genomes_project 5 152612653 152614775 - Slc7a1 protein_coding retained_intron MGP_CASTEiJ_T0076159.1 MGP_CASTEiJ_G0029493.1 mouse_genomes_project 5 152614138 152674122 - MGP_CASTEiJ_P0076159 Slc7a1 protein_coding protein_coding MGP_CASTEiJ_T0076160.1 MGP_CASTEiJ_G0029493.1 mouse_genomes_project 5 152624199 152643804 - MGP_CASTEiJ_P0076160 Slc7a1 protein_coding protein_coding MGP_CASTEiJ_T0076161.1 MGP_CASTEiJ_G0029493.1 mouse_genomes_project 5 152665792 152668026 - Slc7a1 protein_coding retained_intron MGP_CASTEiJ_T0099932.1 MGP_CASTEiJ_G0036845.1 mouse_genomes_project 5 147729002 147729106 + Gm24311 snRNA snRNA MGP_CASTEiJ_T0071512.1 MGP_CASTEiJ_G0028596.1 mouse_genomes_project 5 34060397 34076118 + MGP_CASTEiJ_P0071512 Grpel1 protein_coding protein_coding MGP_CASTEiJ_T0014658.1 MGP_CASTEiJ_G0012821.1 mouse_genomes_project 5 141792095 141792953 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070881.1 MGP_CASTEiJ_G0028504.1 mouse_genomes_project 5 27969861 28054892 + MGP_CASTEiJ_P0070881 Dpysl5 protein_coding protein_coding MGP_CASTEiJ_T0070882.1 MGP_CASTEiJ_G0028504.1 mouse_genomes_project 5 27970192 28054886 + MGP_CASTEiJ_P0070882 Dpysl5 protein_coding protein_coding MGP_CASTEiJ_T0070883.1 MGP_CASTEiJ_G0028504.1 mouse_genomes_project 5 27970199 28007557 + MGP_CASTEiJ_P0070883 Dpysl5 protein_coding protein_coding MGP_CASTEiJ_T0070884.1 MGP_CASTEiJ_G0028504.1 mouse_genomes_project 5 28033975 28042591 + Dpysl5 protein_coding processed_transcript MGP_CASTEiJ_T0070885.1 MGP_CASTEiJ_G0028504.1 mouse_genomes_project 5 28043779 28051825 + Dpysl5 protein_coding retained_intron MGP_CASTEiJ_T0070886.1 MGP_CASTEiJ_G0028504.1 mouse_genomes_project 5 28047569 28051931 + Dpysl5 protein_coding retained_intron MGP_CASTEiJ_T0070887.1 MGP_CASTEiJ_G0028504.1 mouse_genomes_project 5 28049258 28052078 + Dpysl5 protein_coding retained_intron MGP_CASTEiJ_T0014685.1 MGP_CASTEiJ_G0012848.1 mouse_genomes_project 5 151274331 151274823 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070279.1 MGP_CASTEiJ_G0028394.1 mouse_genomes_project 5 5041945 5065453 + MGP_CASTEiJ_P0070279 Sri protein_coding protein_coding MGP_CASTEiJ_T0070280.1 MGP_CASTEiJ_G0028394.1 mouse_genomes_project 5 5052573 5065227 + MGP_CASTEiJ_P0070280 Sri protein_coding protein_coding MGP_CASTEiJ_T0070281.1 MGP_CASTEiJ_G0028394.1 mouse_genomes_project 5 5052604 5053908 + Sri protein_coding retained_intron MGP_CASTEiJ_T0070282.1 MGP_CASTEiJ_G0028394.1 mouse_genomes_project 5 5052608 5055774 + Sri protein_coding retained_intron MGP_CASTEiJ_T0070283.1 MGP_CASTEiJ_G0028394.1 mouse_genomes_project 5 5052654 5060683 + Sri protein_coding retained_intron MGP_CASTEiJ_T0070284.1 MGP_CASTEiJ_G0028394.1 mouse_genomes_project 5 5055394 5063818 + Sri protein_coding retained_intron MGP_CASTEiJ_T0070285.1 MGP_CASTEiJ_G0028394.1 mouse_genomes_project 5 5057342 5058548 + Sri protein_coding retained_intron MGP_CASTEiJ_T0014491.1 MGP_CASTEiJ_G0012654.1 mouse_genomes_project 5 59748735 59749573 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008216.1 MGP_CASTEiJ_G0006679.1 mouse_genomes_project 5 144067273 144068036 - Gm43703 lincRNA lincRNA MGP_CASTEiJ_T0001748.1 MGP_CASTEiJ_G0001671.1 mouse_genomes_project 5 124511024 124515704 + TEC TEC MGP_CASTEiJ_T0004732.1 MGP_CASTEiJ_G0004082.1 mouse_genomes_project 5 141424694 141427322 + 6330418K02Rik antisense antisense MGP_CASTEiJ_T0004733.1 MGP_CASTEiJ_G0004082.1 mouse_genomes_project 5 141424705 141426993 + 6330418K02Rik antisense antisense MGP_CASTEiJ_T0004734.1 MGP_CASTEiJ_G0004082.1 mouse_genomes_project 5 141424720 141427322 + 6330418K02Rik antisense antisense MGP_CASTEiJ_T0004735.1 MGP_CASTEiJ_G0004082.1 mouse_genomes_project 5 141424759 141426890 + 6330418K02Rik antisense antisense MGP_CASTEiJ_T0004736.1 MGP_CASTEiJ_G0004082.1 mouse_genomes_project 5 141426204 141426744 + 6330418K02Rik antisense antisense MGP_CASTEiJ_T0014553.1 MGP_CASTEiJ_G0012716.1 mouse_genomes_project 5 88921321 88922716 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070347.1 MGP_CASTEiJ_G0028402.1 mouse_genomes_project 5 5952657 5987470 - MGP_CASTEiJ_P0070347 Crot protein_coding protein_coding MGP_CASTEiJ_T0070348.1 MGP_CASTEiJ_G0028402.1 mouse_genomes_project 5 5960903 5970456 - Crot protein_coding processed_transcript MGP_CASTEiJ_T0070349.1 MGP_CASTEiJ_G0028402.1 mouse_genomes_project 5 5974472 5987188 - Crot protein_coding retained_intron MGP_CASTEiJ_T0070449.1 MGP_CASTEiJ_G0028420.1 mouse_genomes_project 5 17901216 17964907 - MGP_CASTEiJ_P0070449 Rsbn1l protein_coding protein_coding MGP_CASTEiJ_T0070450.1 MGP_CASTEiJ_G0028420.1 mouse_genomes_project 5 17903776 17969694 - MGP_CASTEiJ_P0070450 Rsbn1l protein_coding protein_coding MGP_CASTEiJ_T0070451.1 MGP_CASTEiJ_G0028420.1 mouse_genomes_project 5 17930140 17932406 - Rsbn1l protein_coding retained_intron MGP_CASTEiJ_T0070452.1 MGP_CASTEiJ_G0028420.1 mouse_genomes_project 5 17930171 17957840 - MGP_CASTEiJ_P0070452 Rsbn1l protein_coding protein_coding MGP_CASTEiJ_T0004601.1 MGP_CASTEiJ_G0003989.1 mouse_genomes_project 5 90608003 90627195 - Gm43449 antisense antisense MGP_CASTEiJ_T0014480.1 MGP_CASTEiJ_G0012643.1 mouse_genomes_project 5 56442067 56442289 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071910.1 MGP_CASTEiJ_G0028663.1 mouse_genomes_project 5 51817157 51825445 - MGP_CASTEiJ_P0071910 Cckar protein_coding protein_coding MGP_CASTEiJ_T0071911.1 MGP_CASTEiJ_G0028663.1 mouse_genomes_project 5 51823811 51825009 - Cckar protein_coding processed_transcript MGP_CASTEiJ_T0014454.1 MGP_CASTEiJ_G0012617.1 mouse_genomes_project 5 41661849 41663867 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071453.1 MGP_CASTEiJ_G0028587.1 mouse_genomes_project 5 32987553 33078479 - MGP_CASTEiJ_P0071453 Cpz protein_coding unknown_likely_coding MGP_CASTEiJ_T0071454.1 MGP_CASTEiJ_G0028587.1 mouse_genomes_project 5 33054534 33078617 - MGP_CASTEiJ_P0071454 Cpz protein_coding protein_coding MGP_CASTEiJ_T0071455.1 MGP_CASTEiJ_G0028587.1 mouse_genomes_project 5 33070960 33078492 - MGP_CASTEiJ_P0071455 Cpz protein_coding protein_coding MGP_CASTEiJ_T0074244.1 MGP_CASTEiJ_G0029140.1 mouse_genomes_project 5 123774763 123799007 - MGP_CASTEiJ_P0074244 Sh2b3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074245.1 MGP_CASTEiJ_G0029140.1 mouse_genomes_project 5 123774923 123799041 - MGP_CASTEiJ_P0074245 Sh2b3 protein_coding protein_coding MGP_CASTEiJ_T0074246.1 MGP_CASTEiJ_G0029140.1 mouse_genomes_project 5 123775587 123787988 - MGP_CASTEiJ_P0074246 Sh2b3 protein_coding protein_coding MGP_CASTEiJ_T0074247.1 MGP_CASTEiJ_G0029140.1 mouse_genomes_project 5 123776285 123796900 - MGP_CASTEiJ_P0074247 Sh2b3 protein_coding protein_coding MGP_CASTEiJ_T0074248.1 MGP_CASTEiJ_G0029140.1 mouse_genomes_project 5 123776491 123799032 - MGP_CASTEiJ_P0074248 Sh2b3 protein_coding protein_coding MGP_CASTEiJ_T0074249.1 MGP_CASTEiJ_G0029140.1 mouse_genomes_project 5 123776565 123798999 - MGP_CASTEiJ_P0074249 Sh2b3 protein_coding protein_coding MGP_CASTEiJ_T0074250.1 MGP_CASTEiJ_G0029140.1 mouse_genomes_project 5 123778382 123799827 - MGP_CASTEiJ_P0074250 Sh2b3 protein_coding protein_coding MGP_CASTEiJ_T0074251.1 MGP_CASTEiJ_G0029140.1 mouse_genomes_project 5 123787814 123797060 - MGP_CASTEiJ_P0074251 Sh2b3 protein_coding protein_coding MGP_CASTEiJ_T0076305.1 MGP_CASTEiJ_G0029515.1 mouse_genomes_project 5 156204189 156214836 - MGP_CASTEiJ_P0076305 Rfc3 protein_coding protein_coding MGP_CASTEiJ_T0076306.1 MGP_CASTEiJ_G0029515.1 mouse_genomes_project 5 156204252 156205563 - Rfc3 protein_coding retained_intron MGP_CASTEiJ_T0076307.1 MGP_CASTEiJ_G0029515.1 mouse_genomes_project 5 156204254 156206192 - Rfc3 protein_coding retained_intron MGP_CASTEiJ_T0076308.1 MGP_CASTEiJ_G0029515.1 mouse_genomes_project 5 156204257 156214796 - Rfc3 protein_coding retained_intron MGP_CASTEiJ_T0076309.1 MGP_CASTEiJ_G0029515.1 mouse_genomes_project 5 156205845 156214802 - Rfc3 protein_coding retained_intron MGP_CASTEiJ_T0076310.1 MGP_CASTEiJ_G0029515.1 mouse_genomes_project 5 156208399 156214789 - Rfc3 protein_coding retained_intron MGP_CASTEiJ_T0076311.1 MGP_CASTEiJ_G0029515.1 mouse_genomes_project 5 156213188 156214821 - Rfc3 protein_coding retained_intron MGP_CASTEiJ_T0072560.1 MGP_CASTEiJ_G0028772.1 mouse_genomes_project 5 85854884 85894328 + MGP_CASTEiJ_P0072560 Stap1 protein_coding protein_coding MGP_CASTEiJ_T0072561.1 MGP_CASTEiJ_G0028772.1 mouse_genomes_project 5 85854888 85885212 + Stap1 protein_coding retained_intron MGP_CASTEiJ_T0072562.1 MGP_CASTEiJ_G0028772.1 mouse_genomes_project 5 85854912 85874219 + Stap1 protein_coding retained_intron MGP_CASTEiJ_T0072563.1 MGP_CASTEiJ_G0028772.1 mouse_genomes_project 5 85854921 85874215 + Stap1 protein_coding retained_intron MGP_CASTEiJ_T0072564.1 MGP_CASTEiJ_G0028772.1 mouse_genomes_project 5 85854950 85891276 + MGP_CASTEiJ_P0072564 Stap1 protein_coding protein_coding MGP_CASTEiJ_T0072565.1 MGP_CASTEiJ_G0028772.1 mouse_genomes_project 5 85874732 85882274 + Stap1 protein_coding retained_intron MGP_CASTEiJ_T0073579.1 MGP_CASTEiJ_G0029012.1 mouse_genomes_project 5 113342721 113351999 - MGP_CASTEiJ_P0073579 Asphd2 protein_coding protein_coding MGP_CASTEiJ_T0073580.1 MGP_CASTEiJ_G0029012.1 mouse_genomes_project 5 113343843 113348148 - Asphd2 protein_coding processed_transcript MGP_CASTEiJ_T0073581.1 MGP_CASTEiJ_G0029012.1 mouse_genomes_project 5 113351284 113353811 - MGP_CASTEiJ_P0073581 Asphd2 protein_coding protein_coding MGP_CASTEiJ_T0073582.1 MGP_CASTEiJ_G0029012.1 mouse_genomes_project 5 113351473 113356125 - MGP_CASTEiJ_P0073582 Asphd2 protein_coding protein_coding MGP_CASTEiJ_T0073583.1 MGP_CASTEiJ_G0029012.1 mouse_genomes_project 5 113351561 113353745 - MGP_CASTEiJ_P0073583 Asphd2 protein_coding protein_coding MGP_CASTEiJ_T0073584.1 MGP_CASTEiJ_G0029012.1 mouse_genomes_project 5 113351596 113354087 - MGP_CASTEiJ_P0073584 Asphd2 protein_coding protein_coding MGP_CASTEiJ_T0073585.1 MGP_CASTEiJ_G0029012.1 mouse_genomes_project 5 113351666 113353717 - MGP_CASTEiJ_P0073585 Asphd2 protein_coding protein_coding MGP_CASTEiJ_T0001638.1 MGP_CASTEiJ_G0001561.1 mouse_genomes_project 5 74128015 74130861 - TEC TEC MGP_CASTEiJ_T0075465.1 MGP_CASTEiJ_G0029346.1 mouse_genomes_project 5 140801775 140828916 + MGP_CASTEiJ_P0075465 Tsc22d4 protein_coding protein_coding MGP_CASTEiJ_T0075466.1 MGP_CASTEiJ_G0029346.1 mouse_genomes_project 5 140802017 140810186 + Tsc22d4 protein_coding retained_intron MGP_CASTEiJ_T0075467.1 MGP_CASTEiJ_G0029346.1 mouse_genomes_project 5 140802054 140819568 + MGP_CASTEiJ_P0075467 Tsc22d4 protein_coding protein_coding MGP_CASTEiJ_T0075468.1 MGP_CASTEiJ_G0029346.1 mouse_genomes_project 5 140808645 140817084 + Tsc22d4 protein_coding retained_intron MGP_CASTEiJ_T0075469.1 MGP_CASTEiJ_G0029346.1 mouse_genomes_project 5 140816322 140817737 + MGP_CASTEiJ_P0075469 Tsc22d4 protein_coding protein_coding MGP_CASTEiJ_T0075470.1 MGP_CASTEiJ_G0029346.1 mouse_genomes_project 5 140816362 140817621 + MGP_CASTEiJ_P0075470 Tsc22d4 protein_coding protein_coding MGP_CASTEiJ_T0075471.1 MGP_CASTEiJ_G0029346.1 mouse_genomes_project 5 140819858 140828866 + MGP_CASTEiJ_P0075471 Tsc22d4 protein_coding protein_coding MGP_CASTEiJ_T0075472.1 MGP_CASTEiJ_G0029346.1 mouse_genomes_project 5 140819869 140828866 + MGP_CASTEiJ_P0075472 Tsc22d4 protein_coding protein_coding MGP_CASTEiJ_T0075473.1 MGP_CASTEiJ_G0029346.1 mouse_genomes_project 5 140828163 140828756 + Tsc22d4 protein_coding processed_transcript MGP_CASTEiJ_T0075376.1 MGP_CASTEiJ_G0029330.1 mouse_genomes_project 5 140398281 140514116 - MGP_CASTEiJ_P0075376 Zan protein_coding protein_coding MGP_CASTEiJ_T0075377.1 MGP_CASTEiJ_G0029330.1 mouse_genomes_project 5 140398281 140513647 - MGP_CASTEiJ_P0075377 Zan protein_coding protein_coding MGP_CASTEiJ_T0075378.1 MGP_CASTEiJ_G0029330.1 mouse_genomes_project 5 140418319 140421520 - Zan protein_coding retained_intron MGP_CASTEiJ_T0075379.1 MGP_CASTEiJ_G0029330.1 mouse_genomes_project 5 140434779 140437927 - MGP_CASTEiJ_P0075379 Zan protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075380.1 MGP_CASTEiJ_G0029330.1 mouse_genomes_project 5 140463182 140480048 - Zan protein_coding retained_intron MGP_CASTEiJ_T0073385.1 MGP_CASTEiJ_G0028975.1 mouse_genomes_project 5 109357064 109363878 - MGP_CASTEiJ_P0073385 Slc26a1 protein_coding protein_coding MGP_CASTEiJ_T0073386.1 MGP_CASTEiJ_G0028975.1 mouse_genomes_project 5 109358275 109363062 - MGP_CASTEiJ_P0073386 Slc26a1 protein_coding protein_coding MGP_CASTEiJ_T0073387.1 MGP_CASTEiJ_G0028975.1 mouse_genomes_project 5 109358291 109363062 - MGP_CASTEiJ_P0073387 Slc26a1 protein_coding protein_coding MGP_CASTEiJ_T0073388.1 MGP_CASTEiJ_G0028975.1 mouse_genomes_project 5 109359824 109363094 - MGP_CASTEiJ_P0073388 Slc26a1 protein_coding protein_coding MGP_CASTEiJ_T0072956.1 MGP_CASTEiJ_G0028883.1 mouse_genomes_project 5 98043698 98070900 + MGP_CASTEiJ_P0072956 Fgf5 protein_coding protein_coding MGP_CASTEiJ_T0072957.1 MGP_CASTEiJ_G0028883.1 mouse_genomes_project 5 98043930 98069336 + MGP_CASTEiJ_P0072957 Fgf5 protein_coding protein_coding MGP_CASTEiJ_T0075990.1 MGP_CASTEiJ_G0029458.1 mouse_genomes_project 5 148938821 148956145 + MGP_CASTEiJ_P0075990 Arpc1b protein_coding protein_coding MGP_CASTEiJ_T0075991.1 MGP_CASTEiJ_G0029458.1 mouse_genomes_project 5 148938864 148947476 + Arpc1b protein_coding processed_transcript MGP_CASTEiJ_T0075992.1 MGP_CASTEiJ_G0029458.1 mouse_genomes_project 5 148938907 148948944 + Arpc1b protein_coding retained_intron MGP_CASTEiJ_T0075993.1 MGP_CASTEiJ_G0029458.1 mouse_genomes_project 5 148938918 148954196 + MGP_CASTEiJ_P0075993 Arpc1b protein_coding protein_coding MGP_CASTEiJ_T0075994.1 MGP_CASTEiJ_G0029458.1 mouse_genomes_project 5 148938922 148947320 + MGP_CASTEiJ_P0075994 Arpc1b protein_coding protein_coding MGP_CASTEiJ_T0075995.1 MGP_CASTEiJ_G0029458.1 mouse_genomes_project 5 148948367 148953000 + MGP_CASTEiJ_P0075995 Arpc1b protein_coding protein_coding MGP_CASTEiJ_T0075996.1 MGP_CASTEiJ_G0029458.1 mouse_genomes_project 5 148948662 148951321 + Arpc1b protein_coding retained_intron MGP_CASTEiJ_T0075997.1 MGP_CASTEiJ_G0029458.1 mouse_genomes_project 5 148948662 148953146 + Arpc1b protein_coding processed_transcript MGP_CASTEiJ_T0075998.1 MGP_CASTEiJ_G0029458.1 mouse_genomes_project 5 148951505 148953464 + Arpc1b protein_coding retained_intron MGP_CASTEiJ_T0075999.1 MGP_CASTEiJ_G0029458.1 mouse_genomes_project 5 148952971 148957680 + MGP_CASTEiJ_P0075999 Arpc1b protein_coding protein_coding MGP_CASTEiJ_T0076000.1 MGP_CASTEiJ_G0029458.1 mouse_genomes_project 5 148953390 148954198 + Arpc1b protein_coding retained_intron MGP_CASTEiJ_T0101114.1 MGP_CASTEiJ_G0038027.1 mouse_genomes_project 5 55368586 55368714 - Gm23015 snoRNA snoRNA MGP_CASTEiJ_T0072335.1 MGP_CASTEiJ_G0028736.1 mouse_genomes_project 5 72651838 72666855 - MGP_CASTEiJ_P0072335 Sgcb protein_coding protein_coding MGP_CASTEiJ_T0072336.1 MGP_CASTEiJ_G0028736.1 mouse_genomes_project 5 72663081 72663544 - Sgcb protein_coding retained_intron MGP_CASTEiJ_T0075122.1 MGP_CASTEiJ_G0029282.1 mouse_genomes_project 5 138152252 138213798 - MGP_CASTEiJ_P0075122 Fkbp6 protein_coding protein_coding MGP_CASTEiJ_T0075123.1 MGP_CASTEiJ_G0029282.1 mouse_genomes_project 5 138152252 138213768 - MGP_CASTEiJ_P0075123 Fkbp6 protein_coding protein_coding MGP_CASTEiJ_T0075124.1 MGP_CASTEiJ_G0029282.1 mouse_genomes_project 5 138200949 138213797 - MGP_CASTEiJ_P0075124 Fkbp6 protein_coding protein_coding MGP_CASTEiJ_T0075125.1 MGP_CASTEiJ_G0029282.1 mouse_genomes_project 5 138200949 138213629 - MGP_CASTEiJ_P0075125 Fkbp6 protein_coding protein_coding MGP_CASTEiJ_T0014399.1 MGP_CASTEiJ_G0012562.1 mouse_genomes_project 5 22311079 22311645 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014533.1 MGP_CASTEiJ_G0012696.1 mouse_genomes_project 5 80453180 80454053 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074317.1 MGP_CASTEiJ_G0029151.1 mouse_genomes_project 5 124379635 124387439 - MGP_CASTEiJ_P0074317 Fam216a protein_coding protein_coding MGP_CASTEiJ_T0014671.1 MGP_CASTEiJ_G0012834.1 mouse_genomes_project 5 147831781 147832738 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074480.1 MGP_CASTEiJ_G0029175.1 mouse_genomes_project 5 125619293 125620716 + MGP_CASTEiJ_P0074480 B3gnt4 protein_coding protein_coding MGP_CASTEiJ_T0008275.1 MGP_CASTEiJ_G0006723.1 mouse_genomes_project 5 155959497 156028214 - D730045B01Rik lincRNA lincRNA MGP_CASTEiJ_T0008276.1 MGP_CASTEiJ_G0006723.1 mouse_genomes_project 5 155960643 155960949 - D730045B01Rik lincRNA lincRNA MGP_CASTEiJ_T0073764.1 MGP_CASTEiJ_G0029047.1 mouse_genomes_project 5 115873665 115888200 + MGP_CASTEiJ_P0073764 Tchp protein_coding protein_coding MGP_CASTEiJ_T0073765.1 MGP_CASTEiJ_G0029047.1 mouse_genomes_project 5 115873724 115875234 + Tchp protein_coding processed_transcript MGP_CASTEiJ_T0073766.1 MGP_CASTEiJ_G0029047.1 mouse_genomes_project 5 115873769 115888200 + Tchp protein_coding retained_intron MGP_CASTEiJ_T0073767.1 MGP_CASTEiJ_G0029047.1 mouse_genomes_project 5 115876883 115879748 + Tchp protein_coding retained_intron MGP_CASTEiJ_T0073768.1 MGP_CASTEiJ_G0029047.1 mouse_genomes_project 5 115880471 115885565 + MGP_CASTEiJ_P0073768 Tchp protein_coding protein_coding MGP_CASTEiJ_T0073769.1 MGP_CASTEiJ_G0029047.1 mouse_genomes_project 5 115880793 115888200 + Tchp protein_coding processed_transcript MGP_CASTEiJ_T0073770.1 MGP_CASTEiJ_G0029047.1 mouse_genomes_project 5 115883413 115884580 + Tchp protein_coding retained_intron MGP_CASTEiJ_T0073771.1 MGP_CASTEiJ_G0029047.1 mouse_genomes_project 5 115885559 115887034 + Tchp protein_coding retained_intron MGP_CASTEiJ_T0073329.1 MGP_CASTEiJ_G0028964.1 mouse_genomes_project 5 108932840 108944436 + MGP_CASTEiJ_P0073329 Dr1 protein_coding protein_coding MGP_CASTEiJ_T0073330.1 MGP_CASTEiJ_G0028964.1 mouse_genomes_project 5 108940821 108942526 + Dr1 protein_coding processed_transcript MGP_CASTEiJ_T0072876.1 MGP_CASTEiJ_G0028863.1 mouse_genomes_project 5 92796756 92798526 + MGP_CASTEiJ_P0072876 Stbd1 protein_coding protein_coding MGP_CASTEiJ_T0072877.1 MGP_CASTEiJ_G0028863.1 mouse_genomes_project 5 92796766 92800267 + MGP_CASTEiJ_P0072877 Stbd1 protein_coding protein_coding MGP_CASTEiJ_T0072878.1 MGP_CASTEiJ_G0028863.1 mouse_genomes_project 5 92796783 92800000 + MGP_CASTEiJ_P0072878 Stbd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075951.1 MGP_CASTEiJ_G0029450.1 mouse_genomes_project 5 147986149 148008386 + MGP_CASTEiJ_P0075951 Bri3 protein_coding protein_coding MGP_CASTEiJ_T0075952.1 MGP_CASTEiJ_G0029450.1 mouse_genomes_project 5 147999346 148218079 + MGP_CASTEiJ_P0075952 Bri3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075953.1 MGP_CASTEiJ_G0029450.1 mouse_genomes_project 5 147999355 148008565 + MGP_CASTEiJ_P0075953 Bri3 protein_coding protein_coding MGP_CASTEiJ_T0073576.1 MGP_CASTEiJ_G0029011.1 mouse_genomes_project 5 113309943 113312176 - MGP_CASTEiJ_P0073576 Gm6583 protein_coding protein_coding MGP_CASTEiJ_T0072255.1 MGP_CASTEiJ_G0028722.1 mouse_genomes_project 5 71520888 71526661 - MGP_CASTEiJ_P0072255 protein_coding protein_coding MGP_CASTEiJ_T0070378.1 MGP_CASTEiJ_G0028406.1 mouse_genomes_project 5 6495691 6742460 - MGP_CASTEiJ_P0070378 Grm3 protein_coding protein_coding MGP_CASTEiJ_T0014540.1 MGP_CASTEiJ_G0012703.1 mouse_genomes_project 5 86909844 86914321 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074872.1 MGP_CASTEiJ_G0029243.1 mouse_genomes_project 5 132528690 132562723 + MGP_CASTEiJ_P0074872 Crcp protein_coding protein_coding MGP_CASTEiJ_T0074873.1 MGP_CASTEiJ_G0029243.1 mouse_genomes_project 5 132528707 132562766 + Crcp protein_coding processed_transcript MGP_CASTEiJ_T0074874.1 MGP_CASTEiJ_G0029243.1 mouse_genomes_project 5 132528722 132562584 + Crcp protein_coding processed_transcript MGP_CASTEiJ_T0074875.1 MGP_CASTEiJ_G0029243.1 mouse_genomes_project 5 132528779 132562506 + MGP_CASTEiJ_P0074875 Crcp protein_coding protein_coding MGP_CASTEiJ_T0074876.1 MGP_CASTEiJ_G0029243.1 mouse_genomes_project 5 132544718 132563062 + Crcp protein_coding processed_transcript MGP_CASTEiJ_T0014686.1 MGP_CASTEiJ_G0012849.1 mouse_genomes_project 5 151522897 151523362 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072516.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80584700 80969575 + Adgrl3 protein_coding retained_intron MGP_CASTEiJ_T0072517.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80585157 81378546 + MGP_CASTEiJ_P0072517 Adgrl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072518.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80585933 81266230 + Adgrl3 protein_coding retained_intron MGP_CASTEiJ_T0072519.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80585936 81266227 + Adgrl3 protein_coding retained_intron MGP_CASTEiJ_T0072520.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80586177 80637014 + Adgrl3 protein_coding retained_intron MGP_CASTEiJ_T0072521.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80586380 81049753 + Adgrl3 protein_coding retained_intron MGP_CASTEiJ_T0072522.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80586383 81374352 + MGP_CASTEiJ_P0072522 Adgrl3 protein_coding protein_coding MGP_CASTEiJ_T0072523.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80586771 81378547 + MGP_CASTEiJ_P0072523 Adgrl3 protein_coding protein_coding MGP_CASTEiJ_T0072524.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80586969 80779264 + Adgrl3 protein_coding processed_transcript MGP_CASTEiJ_T0072525.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80586970 81378546 + Adgrl3 protein_coding processed_transcript MGP_CASTEiJ_T0072526.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80586988 81149335 + Adgrl3 protein_coding retained_intron MGP_CASTEiJ_T0072527.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80892479 81377242 + MGP_CASTEiJ_P0072527 Adgrl3 protein_coding protein_coding MGP_CASTEiJ_T0072528.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80892479 81377242 + MGP_CASTEiJ_P0072528 Adgrl3 protein_coding protein_coding MGP_CASTEiJ_T0072529.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80892479 81377242 + MGP_CASTEiJ_P0072529 Adgrl3 protein_coding protein_coding MGP_CASTEiJ_T0072530.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80892479 81377242 + MGP_CASTEiJ_P0072530 Adgrl3 protein_coding protein_coding MGP_CASTEiJ_T0072531.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80892487 80931919 + Adgrl3 protein_coding processed_transcript MGP_CASTEiJ_T0072532.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80892517 81377111 + MGP_CASTEiJ_P0072532 Adgrl3 protein_coding protein_coding MGP_CASTEiJ_T0072533.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80892517 81377111 + MGP_CASTEiJ_P0072533 Adgrl3 protein_coding protein_coding MGP_CASTEiJ_T0072534.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80892542 81377613 + MGP_CASTEiJ_P0072534 Adgrl3 protein_coding protein_coding MGP_CASTEiJ_T0072535.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80892630 81378546 + MGP_CASTEiJ_P0072535 Adgrl3 protein_coding protein_coding MGP_CASTEiJ_T0072536.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80892630 81378546 + MGP_CASTEiJ_P0072536 Adgrl3 protein_coding protein_coding MGP_CASTEiJ_T0072537.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 80892660 81376958 + MGP_CASTEiJ_P0072537 Adgrl3 protein_coding protein_coding MGP_CASTEiJ_T0072538.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 81223226 81266009 + Adgrl3 protein_coding processed_transcript MGP_CASTEiJ_T0072539.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 81238305 81378546 + MGP_CASTEiJ_P0072539 Adgrl3 protein_coding protein_coding MGP_CASTEiJ_T0072540.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 81298122 81300234 + Adgrl3 protein_coding retained_intron MGP_CASTEiJ_T0072541.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 81351571 81406643 + Adgrl3 protein_coding processed_transcript MGP_CASTEiJ_T0072542.1 MGP_CASTEiJ_G0028768.1 mouse_genomes_project 5 81372930 81374974 + Adgrl3 protein_coding retained_intron MGP_CASTEiJ_T0075860.1 MGP_CASTEiJ_G0029431.1 mouse_genomes_project 5 147028819 147042997 - MGP_CASTEiJ_P0075860 Zdhhc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075861.1 MGP_CASTEiJ_G0029431.1 mouse_genomes_project 5 147028871 147042758 - MGP_CASTEiJ_P0075861 Zdhhc4 protein_coding protein_coding MGP_CASTEiJ_T0075862.1 MGP_CASTEiJ_G0029431.1 mouse_genomes_project 5 147034505 147042988 - Zdhhc4 protein_coding processed_transcript MGP_CASTEiJ_T0075863.1 MGP_CASTEiJ_G0029431.1 mouse_genomes_project 5 147034560 147043000 - MGP_CASTEiJ_P0075863 Zdhhc4 protein_coding protein_coding MGP_CASTEiJ_T0075864.1 MGP_CASTEiJ_G0029431.1 mouse_genomes_project 5 147038090 147043006 - MGP_CASTEiJ_P0075864 Zdhhc4 protein_coding protein_coding MGP_CASTEiJ_T0075865.1 MGP_CASTEiJ_G0029431.1 mouse_genomes_project 5 147038177 147043006 - Zdhhc4 protein_coding processed_transcript MGP_CASTEiJ_T0075866.1 MGP_CASTEiJ_G0029431.1 mouse_genomes_project 5 147038192 147043005 - MGP_CASTEiJ_P0075866 Zdhhc4 protein_coding protein_coding MGP_CASTEiJ_T0075867.1 MGP_CASTEiJ_G0029431.1 mouse_genomes_project 5 147038290 147042307 - Zdhhc4 protein_coding retained_intron MGP_CASTEiJ_T0075868.1 MGP_CASTEiJ_G0029431.1 mouse_genomes_project 5 147039953 147042966 - Zdhhc4 protein_coding processed_transcript MGP_CASTEiJ_T0075869.1 MGP_CASTEiJ_G0029431.1 mouse_genomes_project 5 147040016 147042969 - Zdhhc4 protein_coding processed_transcript MGP_CASTEiJ_T0075870.1 MGP_CASTEiJ_G0029431.1 mouse_genomes_project 5 147042033 147042979 - Zdhhc4 protein_coding processed_transcript MGP_CASTEiJ_T0075511.1 MGP_CASTEiJ_G0029357.1 mouse_genomes_project 5 141234814 141238415 + MGP_CASTEiJ_P0075511 Cops6 protein_coding protein_coding MGP_CASTEiJ_T0075512.1 MGP_CASTEiJ_G0029357.1 mouse_genomes_project 5 141234843 141237738 + MGP_CASTEiJ_P0075512 Cops6 protein_coding protein_coding MGP_CASTEiJ_T0075513.1 MGP_CASTEiJ_G0029357.1 mouse_genomes_project 5 141234852 141236144 + Cops6 protein_coding retained_intron MGP_CASTEiJ_T0075514.1 MGP_CASTEiJ_G0029357.1 mouse_genomes_project 5 141234912 141237910 + Cops6 protein_coding retained_intron MGP_CASTEiJ_T0075515.1 MGP_CASTEiJ_G0029357.1 mouse_genomes_project 5 141236536 141237679 + MGP_CASTEiJ_P0075515 Cops6 protein_coding protein_coding MGP_CASTEiJ_T0007956.1 MGP_CASTEiJ_G0006501.1 mouse_genomes_project 5 72258894 72267536 + Gm34411 lincRNA lincRNA MGP_CASTEiJ_T0073546.1 MGP_CASTEiJ_G0029004.1 mouse_genomes_project 5 112643244 112643895 + MGP_CASTEiJ_P0073546 Gm26897 protein_coding protein_coding MGP_CASTEiJ_T0071673.1 MGP_CASTEiJ_G0028624.1 mouse_genomes_project 5 37333596 37485434 - MGP_CASTEiJ_P0071673 Hs3st1 protein_coding protein_coding MGP_CASTEiJ_T0071674.1 MGP_CASTEiJ_G0028624.1 mouse_genomes_project 5 37333600 37365161 - MGP_CASTEiJ_P0071674 Hs3st1 protein_coding protein_coding MGP_CASTEiJ_T0071675.1 MGP_CASTEiJ_G0028624.1 mouse_genomes_project 5 37334429 37365773 - MGP_CASTEiJ_P0071675 Hs3st1 protein_coding protein_coding MGP_CASTEiJ_T0071676.1 MGP_CASTEiJ_G0028624.1 mouse_genomes_project 5 37334734 37365124 - MGP_CASTEiJ_P0071676 Hs3st1 protein_coding protein_coding MGP_CASTEiJ_T0073293.1 MGP_CASTEiJ_G0028958.1 mouse_genomes_project 5 108463275 108464953 + MGP_CASTEiJ_P0073293 Ube2d2b protein_coding protein_coding MGP_CASTEiJ_T0074850.1 MGP_CASTEiJ_G0029238.1 mouse_genomes_project 5 132380043 132390588 + MGP_CASTEiJ_P0074850 protein_coding protein_coding MGP_CASTEiJ_T0074851.1 MGP_CASTEiJ_G0029238.1 mouse_genomes_project 5 132380088 132382628 + protein_coding retained_intron MGP_CASTEiJ_T0001558.1 MGP_CASTEiJ_G0001483.1 mouse_genomes_project 5 56413805 56417292 + TEC TEC MGP_CASTEiJ_T0001677.1 MGP_CASTEiJ_G0001600.1 mouse_genomes_project 5 103961986 103962303 - TEC TEC MGP_CASTEiJ_T0072667.1 MGP_CASTEiJ_G0028806.1 mouse_genomes_project 5 87941708 87991514 + MGP_CASTEiJ_P0072667 Gm28434 protein_coding protein_coding MGP_CASTEiJ_T0017397.1 MGP_CASTEiJ_G0014914.1 mouse_genomes_project 5 50197049 50203270 + 9230114K14Rik processed_transcript lincRNA MGP_CASTEiJ_T0017398.1 MGP_CASTEiJ_G0014914.1 mouse_genomes_project 5 50197056 50206783 + 9230114K14Rik processed_transcript retained_intron MGP_CASTEiJ_T0017399.1 MGP_CASTEiJ_G0014914.1 mouse_genomes_project 5 50197056 50295998 + 9230114K14Rik processed_transcript lincRNA MGP_CASTEiJ_T0017400.1 MGP_CASTEiJ_G0014914.1 mouse_genomes_project 5 50197090 50260238 + 9230114K14Rik processed_transcript lincRNA MGP_CASTEiJ_T0004522.1 MGP_CASTEiJ_G0003925.1 mouse_genomes_project 5 27780105 27793961 + Gm42765 antisense antisense MGP_CASTEiJ_T0004523.1 MGP_CASTEiJ_G0003925.1 mouse_genomes_project 5 27780148 27799405 + Gm42765 antisense antisense MGP_CASTEiJ_T0014359.1 MGP_CASTEiJ_G0012522.1 mouse_genomes_project 5 7151710 7153173 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004540.1 MGP_CASTEiJ_G0003941.1 mouse_genomes_project 5 34343664 34345498 + Gm43701 antisense antisense MGP_CASTEiJ_T0073169.1 MGP_CASTEiJ_G0028933.1 mouse_genomes_project 5 105807486 105830825 - MGP_CASTEiJ_P0073169 Gbp11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073175.1 MGP_CASTEiJ_G0028933.1 mouse_genomes_project 5 105809203 105830825 - MGP_CASTEiJ_P0073175 Gbp11 protein_coding protein_coding MGP_CASTEiJ_T0014506.1 MGP_CASTEiJ_G0012669.1 mouse_genomes_project 5 65701920 65702431 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010395.1 MGP_CASTEiJ_G0008583.1 mouse_genomes_project 5 90916961 90917029 - Gm24322 miRNA miRNA MGP_CASTEiJ_T0001620.1 MGP_CASTEiJ_G0001544.1 mouse_genomes_project 5 71516035 71518649 - TEC TEC MGP_CASTEiJ_T0075455.1 MGP_CASTEiJ_G0029344.1 mouse_genomes_project 5 140698776 140737646 - MGP_CASTEiJ_P0075455 Agfg2 protein_coding protein_coding MGP_CASTEiJ_T0075456.1 MGP_CASTEiJ_G0029344.1 mouse_genomes_project 5 140698798 140737600 - MGP_CASTEiJ_P0075456 Agfg2 protein_coding protein_coding MGP_CASTEiJ_T0075457.1 MGP_CASTEiJ_G0029344.1 mouse_genomes_project 5 140699164 140710980 - Agfg2 protein_coding retained_intron MGP_CASTEiJ_T0075458.1 MGP_CASTEiJ_G0029344.1 mouse_genomes_project 5 140702387 140737646 - MGP_CASTEiJ_P0075458 Agfg2 protein_coding protein_coding MGP_CASTEiJ_T0075459.1 MGP_CASTEiJ_G0029344.1 mouse_genomes_project 5 140704853 140713531 - MGP_CASTEiJ_P0075459 Agfg2 protein_coding protein_coding MGP_CASTEiJ_T0075460.1 MGP_CASTEiJ_G0029344.1 mouse_genomes_project 5 140712027 140737613 - Agfg2 protein_coding retained_intron MGP_CASTEiJ_T0072576.1 MGP_CASTEiJ_G0028777.1 mouse_genomes_project 5 86224137 86287637 - MGP_CASTEiJ_P0072576 Tmprss11a protein_coding protein_coding MGP_CASTEiJ_T0072577.1 MGP_CASTEiJ_G0028777.1 mouse_genomes_project 5 86228917 86232459 - Tmprss11a protein_coding retained_intron MGP_CASTEiJ_T0072256.1 MGP_CASTEiJ_G0028723.1 mouse_genomes_project 5 71520888 71526661 - MGP_CASTEiJ_P0072256 protein_coding protein_coding MGP_CASTEiJ_T0014492.1 MGP_CASTEiJ_G0012655.1 mouse_genomes_project 5 60055358 60055827 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001534.1 MGP_CASTEiJ_G0001459.1 mouse_genomes_project 5 49901143 49904943 - TEC TEC MGP_CASTEiJ_T0008250.1 MGP_CASTEiJ_G0006707.1 mouse_genomes_project 5 153522591 153531836 + Gm42788 lincRNA lincRNA MGP_CASTEiJ_T0001775.1 MGP_CASTEiJ_G0001697.1 mouse_genomes_project 5 131975666 131976605 - TEC TEC MGP_CASTEiJ_T0001586.1 MGP_CASTEiJ_G0001510.1 mouse_genomes_project 5 64651791 64652697 + TEC TEC MGP_CASTEiJ_T0001777.1 MGP_CASTEiJ_G0001699.1 mouse_genomes_project 5 132439226 132442601 + TEC TEC MGP_CASTEiJ_T0001515.1 MGP_CASTEiJ_G0001440.1 mouse_genomes_project 5 46959783 46963249 + TEC TEC MGP_CASTEiJ_T0073554.1 MGP_CASTEiJ_G0029007.1 mouse_genomes_project 5 113226950 113270078 + MGP_CASTEiJ_P0073554 Tpst2 protein_coding protein_coding MGP_CASTEiJ_T0073555.1 MGP_CASTEiJ_G0029007.1 mouse_genomes_project 5 113226963 113263785 + Tpst2 protein_coding retained_intron MGP_CASTEiJ_T0073556.1 MGP_CASTEiJ_G0029007.1 mouse_genomes_project 5 113226966 113270072 + MGP_CASTEiJ_P0073556 Tpst2 protein_coding protein_coding MGP_CASTEiJ_T0073557.1 MGP_CASTEiJ_G0029007.1 mouse_genomes_project 5 113241117 113262485 + MGP_CASTEiJ_P0073557 Tpst2 protein_coding protein_coding MGP_CASTEiJ_T0073558.1 MGP_CASTEiJ_G0029007.1 mouse_genomes_project 5 113257381 113269675 + MGP_CASTEiJ_P0073558 Tpst2 protein_coding protein_coding MGP_CASTEiJ_T0073559.1 MGP_CASTEiJ_G0029007.1 mouse_genomes_project 5 113263039 113264565 + MGP_CASTEiJ_P0073559 Tpst2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073560.1 MGP_CASTEiJ_G0029007.1 mouse_genomes_project 5 113267621 113269682 + Tpst2 protein_coding retained_intron MGP_CASTEiJ_T0014699.1 MGP_CASTEiJ_G0012862.1 mouse_genomes_project 5 155578764 155580619 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071770.1 MGP_CASTEiJ_G0028642.1 mouse_genomes_project 5 43332442 43341544 + MGP_CASTEiJ_P0071770 Med28 protein_coding protein_coding MGP_CASTEiJ_T0071771.1 MGP_CASTEiJ_G0028642.1 mouse_genomes_project 5 43332538 43337817 + MGP_CASTEiJ_P0071771 Med28 protein_coding protein_coding MGP_CASTEiJ_T0071772.1 MGP_CASTEiJ_G0028642.1 mouse_genomes_project 5 43333250 43337826 + Med28 protein_coding processed_transcript MGP_CASTEiJ_T0071773.1 MGP_CASTEiJ_G0028642.1 mouse_genomes_project 5 43334363 43337397 + Med28 protein_coding retained_intron MGP_CASTEiJ_T0070350.1 MGP_CASTEiJ_G0028403.1 mouse_genomes_project 5 6095041 6153655 + MGP_CASTEiJ_P0070350 Tmem243 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070351.1 MGP_CASTEiJ_G0028403.1 mouse_genomes_project 5 6095097 6113040 + MGP_CASTEiJ_P0070351 Tmem243 protein_coding protein_coding MGP_CASTEiJ_T0070369.1 MGP_CASTEiJ_G0028403.1 mouse_genomes_project 5 6151304 6156617 + Tmem243 protein_coding processed_transcript MGP_CASTEiJ_T0001729.1 MGP_CASTEiJ_G0001652.1 mouse_genomes_project 5 120243643 120245262 + TEC TEC MGP_CASTEiJ_T0004500.1 MGP_CASTEiJ_G0003907.1 mouse_genomes_project 5 5033364 5048780 - Gm15731 antisense antisense MGP_CASTEiJ_T0073093.1 MGP_CASTEiJ_G0028909.1 mouse_genomes_project 5 102949129 103252986 - MGP_CASTEiJ_P0073093 Mapk10 protein_coding protein_coding MGP_CASTEiJ_T0073094.1 MGP_CASTEiJ_G0028909.1 mouse_genomes_project 5 102949131 103106956 - MGP_CASTEiJ_P0073094 Mapk10 protein_coding protein_coding MGP_CASTEiJ_T0073095.1 MGP_CASTEiJ_G0028909.1 mouse_genomes_project 5 102949131 103252986 - MGP_CASTEiJ_P0073095 Mapk10 protein_coding protein_coding MGP_CASTEiJ_T0073096.1 MGP_CASTEiJ_G0028909.1 mouse_genomes_project 5 102949131 103149386 - MGP_CASTEiJ_P0073096 Mapk10 protein_coding protein_coding MGP_CASTEiJ_T0073097.1 MGP_CASTEiJ_G0028909.1 mouse_genomes_project 5 102954346 103247521 - MGP_CASTEiJ_P0073097 Mapk10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073098.1 MGP_CASTEiJ_G0028909.1 mouse_genomes_project 5 102954402 103106957 - MGP_CASTEiJ_P0073098 Mapk10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073099.1 MGP_CASTEiJ_G0028909.1 mouse_genomes_project 5 102961517 103252925 - MGP_CASTEiJ_P0073099 Mapk10 protein_coding protein_coding MGP_CASTEiJ_T0073100.1 MGP_CASTEiJ_G0028909.1 mouse_genomes_project 5 103030882 103073026 - MGP_CASTEiJ_P0073100 Mapk10 protein_coding protein_coding MGP_CASTEiJ_T0073101.1 MGP_CASTEiJ_G0028909.1 mouse_genomes_project 5 103031194 103252986 - MGP_CASTEiJ_P0073101 Mapk10 protein_coding protein_coding MGP_CASTEiJ_T0073102.1 MGP_CASTEiJ_G0028909.1 mouse_genomes_project 5 103199460 103252936 - Mapk10 protein_coding processed_transcript MGP_CASTEiJ_T0073103.1 MGP_CASTEiJ_G0028909.1 mouse_genomes_project 5 103247414 103250611 - Mapk10 protein_coding processed_transcript MGP_CASTEiJ_T0073104.1 MGP_CASTEiJ_G0028909.1 mouse_genomes_project 5 103247418 103252986 - Mapk10 protein_coding processed_transcript MGP_CASTEiJ_T0073105.1 MGP_CASTEiJ_G0028909.1 mouse_genomes_project 5 103250549 103252523 - Mapk10 protein_coding processed_transcript MGP_CASTEiJ_T0014654.1 MGP_CASTEiJ_G0012817.1 mouse_genomes_project 5 140969938 140970173 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014625.1 MGP_CASTEiJ_G0012788.1 mouse_genomes_project 5 118789135 118789572 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098963.1 MGP_CASTEiJ_G0035887.1 mouse_genomes_project 5 45840439 45842576 + Gm20475 sense_intronic sense_intronic MGP_CASTEiJ_T0099910.1 MGP_CASTEiJ_G0036823.1 mouse_genomes_project 5 111528981 111529088 - Gm22716 snRNA snRNA MGP_CASTEiJ_T0004496.1 MGP_CASTEiJ_G0003903.1 mouse_genomes_project 5 369305 370777 - Gm42435 antisense antisense MGP_CASTEiJ_T0001432.1 MGP_CASTEiJ_G0001360.1 mouse_genomes_project 5 28161711 28163923 + TEC TEC MGP_CASTEiJ_T0001485.1 MGP_CASTEiJ_G0001411.1 mouse_genomes_project 5 42509747 42511963 - TEC TEC MGP_CASTEiJ_T0099886.1 MGP_CASTEiJ_G0036799.1 mouse_genomes_project 5 69419910 69420017 - Gm26072 snRNA snRNA MGP_CASTEiJ_T0008110.1 MGP_CASTEiJ_G0006608.1 mouse_genomes_project 5 116597934 116599364 - 4930401G09Rik lincRNA lincRNA MGP_CASTEiJ_T0004719.1 MGP_CASTEiJ_G0004071.1 mouse_genomes_project 5 137571965 137661351 + Gm43278 antisense antisense MGP_CASTEiJ_T0099918.1 MGP_CASTEiJ_G0036831.1 mouse_genomes_project 5 123245848 123246006 + Gm24671 snRNA snRNA MGP_CASTEiJ_T0014679.1 MGP_CASTEiJ_G0012842.1 mouse_genomes_project 5 150064357 150064517 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071469.1 MGP_CASTEiJ_G0028590.1 mouse_genomes_project 5 33202766 33234889 - MGP_CASTEiJ_P0071469 Htra3 protein_coding protein_coding MGP_CASTEiJ_T0071470.1 MGP_CASTEiJ_G0028590.1 mouse_genomes_project 5 33207518 33235292 - MGP_CASTEiJ_P0071470 Htra3 protein_coding protein_coding MGP_CASTEiJ_T0071471.1 MGP_CASTEiJ_G0028590.1 mouse_genomes_project 5 33208512 33234604 - MGP_CASTEiJ_P0071471 Htra3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071472.1 MGP_CASTEiJ_G0028590.1 mouse_genomes_project 5 33217098 33234982 - MGP_CASTEiJ_P0071472 Htra3 protein_coding protein_coding MGP_CASTEiJ_T0071473.1 MGP_CASTEiJ_G0028590.1 mouse_genomes_project 5 33223727 33227116 - MGP_CASTEiJ_P0071473 Htra3 protein_coding protein_coding MGP_CASTEiJ_T0071474.1 MGP_CASTEiJ_G0028590.1 mouse_genomes_project 5 33233892 33234972 - Htra3 protein_coding retained_intron MGP_CASTEiJ_T0014507.1 MGP_CASTEiJ_G0012670.1 mouse_genomes_project 5 66286968 66287278 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099864.1 MGP_CASTEiJ_G0036777.1 mouse_genomes_project 5 19712802 19712867 - Gm24512 snRNA snRNA MGP_CASTEiJ_T0072257.1 MGP_CASTEiJ_G0028724.1 mouse_genomes_project 5 71548854 71564184 - MGP_CASTEiJ_P0072257 Cnga1 protein_coding protein_coding MGP_CASTEiJ_T0072258.1 MGP_CASTEiJ_G0028724.1 mouse_genomes_project 5 71548854 71587582 - MGP_CASTEiJ_P0072258 Cnga1 protein_coding protein_coding MGP_CASTEiJ_T0072259.1 MGP_CASTEiJ_G0028724.1 mouse_genomes_project 5 71549273 71582813 - MGP_CASTEiJ_P0072259 Cnga1 protein_coding protein_coding MGP_CASTEiJ_T0072260.1 MGP_CASTEiJ_G0028724.1 mouse_genomes_project 5 71560163 71582818 - MGP_CASTEiJ_P0072260 Cnga1 protein_coding protein_coding MGP_CASTEiJ_T0072261.1 MGP_CASTEiJ_G0028724.1 mouse_genomes_project 5 71564058 71575955 - MGP_CASTEiJ_P0072261 Cnga1 protein_coding protein_coding MGP_CASTEiJ_T0072262.1 MGP_CASTEiJ_G0028724.1 mouse_genomes_project 5 71587101 71589065 - Cnga1 protein_coding retained_intron MGP_CASTEiJ_T0014522.1 MGP_CASTEiJ_G0012685.1 mouse_genomes_project 5 74373028 74373356 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098768.1 MGP_CASTEiJ_G0035699.1 mouse_genomes_project 5 137904244 137904374 - Gm25492 scaRNA scaRNA MGP_CASTEiJ_T0004602.1 MGP_CASTEiJ_G0003990.1 mouse_genomes_project 5 91167218 91185004 - Gm42532 antisense antisense MGP_CASTEiJ_T0010401.1 MGP_CASTEiJ_G0008589.1 mouse_genomes_project 5 107448718 107448817 - Gm27527 miRNA miRNA MGP_CASTEiJ_T0073161.1 MGP_CASTEiJ_G0028928.1 mouse_genomes_project 5 105254595 105316002 - MGP_CASTEiJ_P0073161 Abcg3 protein_coding protein_coding MGP_CASTEiJ_T0073162.1 MGP_CASTEiJ_G0028928.1 mouse_genomes_project 5 105255120 105310268 - MGP_CASTEiJ_P0073162 Abcg3 protein_coding protein_coding MGP_CASTEiJ_T0070948.1 MGP_CASTEiJ_G0028514.1 mouse_genomes_project 5 28323028 28327430 + MGP_CASTEiJ_P0070948 Atraid protein_coding protein_coding MGP_CASTEiJ_T0070949.1 MGP_CASTEiJ_G0028514.1 mouse_genomes_project 5 28323037 28329221 + Atraid protein_coding retained_intron MGP_CASTEiJ_T0070950.1 MGP_CASTEiJ_G0028514.1 mouse_genomes_project 5 28323351 28329227 + MGP_CASTEiJ_P0070950 Atraid protein_coding protein_coding MGP_CASTEiJ_T0070951.1 MGP_CASTEiJ_G0028514.1 mouse_genomes_project 5 28323364 28328597 + MGP_CASTEiJ_P0070951 Atraid protein_coding protein_coding MGP_CASTEiJ_T0070952.1 MGP_CASTEiJ_G0028514.1 mouse_genomes_project 5 28323375 28329222 + MGP_CASTEiJ_P0070952 Atraid protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070953.1 MGP_CASTEiJ_G0028514.1 mouse_genomes_project 5 28323438 28328948 + MGP_CASTEiJ_P0070953 Atraid protein_coding protein_coding MGP_CASTEiJ_T0070954.1 MGP_CASTEiJ_G0028514.1 mouse_genomes_project 5 28323446 28329225 + MGP_CASTEiJ_P0070954 Atraid protein_coding protein_coding MGP_CASTEiJ_T0070955.1 MGP_CASTEiJ_G0028514.1 mouse_genomes_project 5 28328497 28329227 + Atraid protein_coding processed_transcript MGP_CASTEiJ_T0007839.1 MGP_CASTEiJ_G0006418.1 mouse_genomes_project 5 1745426 1759343 - Gm42744 lincRNA lincRNA MGP_CASTEiJ_T0073710.1 MGP_CASTEiJ_G0029037.1 mouse_genomes_project 5 115268834 115385757 + MGP_CASTEiJ_P0073710 Acacb protein_coding protein_coding MGP_CASTEiJ_T0073711.1 MGP_CASTEiJ_G0029037.1 mouse_genomes_project 5 115290263 115385751 + MGP_CASTEiJ_P0073711 Acacb protein_coding protein_coding MGP_CASTEiJ_T0073712.1 MGP_CASTEiJ_G0029037.1 mouse_genomes_project 5 115303921 115319832 + MGP_CASTEiJ_P0073712 Acacb protein_coding protein_coding MGP_CASTEiJ_T0073713.1 MGP_CASTEiJ_G0029037.1 mouse_genomes_project 5 115330141 115385755 + Acacb protein_coding retained_intron MGP_CASTEiJ_T0073714.1 MGP_CASTEiJ_G0029037.1 mouse_genomes_project 5 115383332 115383958 + Acacb protein_coding retained_intron MGP_CASTEiJ_T0007975.1 MGP_CASTEiJ_G0006516.1 mouse_genomes_project 5 75719095 75760188 + lincRNA lincRNA MGP_CASTEiJ_T0007976.1 MGP_CASTEiJ_G0006516.1 mouse_genomes_project 5 75719340 75760144 + lincRNA lincRNA MGP_CASTEiJ_T0074206.1 MGP_CASTEiJ_G0029135.1 mouse_genomes_project 5 123476848 123507597 - MGP_CASTEiJ_P0074206 Aldh2 protein_coding protein_coding MGP_CASTEiJ_T0074207.1 MGP_CASTEiJ_G0029135.1 mouse_genomes_project 5 123478552 123481843 - Aldh2 protein_coding retained_intron MGP_CASTEiJ_T0074208.1 MGP_CASTEiJ_G0029135.1 mouse_genomes_project 5 123478553 123490479 - MGP_CASTEiJ_P0074208 Aldh2 protein_coding protein_coding MGP_CASTEiJ_T0074209.1 MGP_CASTEiJ_G0029135.1 mouse_genomes_project 5 123478631 123483488 - MGP_CASTEiJ_P0074209 Aldh2 protein_coding protein_coding MGP_CASTEiJ_T0074210.1 MGP_CASTEiJ_G0029135.1 mouse_genomes_project 5 123480977 123507352 - MGP_CASTEiJ_P0074210 Aldh2 protein_coding protein_coding MGP_CASTEiJ_T0074211.1 MGP_CASTEiJ_G0029135.1 mouse_genomes_project 5 123482127 123485900 - Aldh2 protein_coding retained_intron MGP_CASTEiJ_T0074212.1 MGP_CASTEiJ_G0029135.1 mouse_genomes_project 5 123487272 123507354 - MGP_CASTEiJ_P0074212 Aldh2 protein_coding protein_coding MGP_CASTEiJ_T0004690.1 MGP_CASTEiJ_G0004051.1 mouse_genomes_project 5 125381764 125400954 - Gm15857 antisense antisense MGP_CASTEiJ_T0004652.1 MGP_CASTEiJ_G0004025.1 mouse_genomes_project 5 116156322 116191629 + Hnf1aos1 antisense antisense MGP_CASTEiJ_T0004654.1 MGP_CASTEiJ_G0004025.1 mouse_genomes_project 5 116157431 116176460 + Hnf1aos1 antisense antisense MGP_CASTEiJ_T0004655.1 MGP_CASTEiJ_G0004025.1 mouse_genomes_project 5 116157454 116191821 + Hnf1aos1 antisense antisense MGP_CASTEiJ_T0074146.1 MGP_CASTEiJ_G0029125.1 mouse_genomes_project 5 123074007 123079073 + MGP_CASTEiJ_P0074146 Rpl6 protein_coding protein_coding MGP_CASTEiJ_T0074147.1 MGP_CASTEiJ_G0029125.1 mouse_genomes_project 5 123074072 123074786 + Rpl6 protein_coding retained_intron MGP_CASTEiJ_T0074148.1 MGP_CASTEiJ_G0029125.1 mouse_genomes_project 5 123075403 123078801 + MGP_CASTEiJ_P0074148 Rpl6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0074149.1 MGP_CASTEiJ_G0029125.1 mouse_genomes_project 5 123076459 123077190 + Rpl6 protein_coding retained_intron MGP_CASTEiJ_T0074150.1 MGP_CASTEiJ_G0029125.1 mouse_genomes_project 5 123076545 123078791 + MGP_CASTEiJ_P0074150 Rpl6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074151.1 MGP_CASTEiJ_G0029125.1 mouse_genomes_project 5 123076887 123078384 + Rpl6 protein_coding retained_intron MGP_CASTEiJ_T0074152.1 MGP_CASTEiJ_G0029125.1 mouse_genomes_project 5 123078022 123078792 + Rpl6 protein_coding retained_intron MGP_CASTEiJ_T0008051.1 MGP_CASTEiJ_G0006575.1 mouse_genomes_project 5 107042182 107122709 - Gm28050 lincRNA lincRNA MGP_CASTEiJ_T0008052.1 MGP_CASTEiJ_G0006575.1 mouse_genomes_project 5 107104374 107122712 - Gm28050 lincRNA lincRNA MGP_CASTEiJ_T0014469.1 MGP_CASTEiJ_G0012632.1 mouse_genomes_project 5 52213264 52214339 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014697.1 MGP_CASTEiJ_G0012860.1 mouse_genomes_project 5 154949140 154949718 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014531.1 MGP_CASTEiJ_G0012694.1 mouse_genomes_project 5 78914822 78914840 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073547.1 MGP_CASTEiJ_G0029005.1 mouse_genomes_project 5 113196409 113202431 - MGP_CASTEiJ_P0073547 Cryba4 protein_coding protein_coding MGP_CASTEiJ_T0073548.1 MGP_CASTEiJ_G0029005.1 mouse_genomes_project 5 113196410 113201099 - MGP_CASTEiJ_P0073548 Cryba4 protein_coding protein_coding MGP_CASTEiJ_T0073549.1 MGP_CASTEiJ_G0029005.1 mouse_genomes_project 5 113196449 113201740 - MGP_CASTEiJ_P0073549 Cryba4 protein_coding protein_coding MGP_CASTEiJ_T0001648.1 MGP_CASTEiJ_G0001571.1 mouse_genomes_project 5 87374608 87378169 + TEC TEC MGP_CASTEiJ_T0075701.1 MGP_CASTEiJ_G0029393.1 mouse_genomes_project 5 143186764 143197511 - MGP_CASTEiJ_P0075701 Tmem184a protein_coding protein_coding MGP_CASTEiJ_T0075702.1 MGP_CASTEiJ_G0029393.1 mouse_genomes_project 5 143189228 143198498 - MGP_CASTEiJ_P0075702 Tmem184a protein_coding protein_coding MGP_CASTEiJ_T0075703.1 MGP_CASTEiJ_G0029393.1 mouse_genomes_project 5 143191558 143192285 - Tmem184a protein_coding retained_intron MGP_CASTEiJ_T0075705.1 MGP_CASTEiJ_G0029393.1 mouse_genomes_project 5 143197275 143204080 - MGP_CASTEiJ_P0075705 Tmem184a protein_coding protein_coding MGP_CASTEiJ_T0074509.1 MGP_CASTEiJ_G0029179.1 mouse_genomes_project 5 125807417 125832556 - MGP_CASTEiJ_P0074509 Zcchc8 protein_coding protein_coding MGP_CASTEiJ_T0074510.1 MGP_CASTEiJ_G0029179.1 mouse_genomes_project 5 125807425 125832500 - MGP_CASTEiJ_P0074510 Zcchc8 protein_coding protein_coding MGP_CASTEiJ_T0074511.1 MGP_CASTEiJ_G0029179.1 mouse_genomes_project 5 125808953 125812566 - Zcchc8 protein_coding retained_intron MGP_CASTEiJ_T0074512.1 MGP_CASTEiJ_G0029179.1 mouse_genomes_project 5 125813697 125830927 - MGP_CASTEiJ_P0074512 Zcchc8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074513.1 MGP_CASTEiJ_G0029179.1 mouse_genomes_project 5 125813714 125819781 - Zcchc8 protein_coding retained_intron MGP_CASTEiJ_T0074514.1 MGP_CASTEiJ_G0029179.1 mouse_genomes_project 5 125819586 125825447 - MGP_CASTEiJ_P0074514 Zcchc8 protein_coding protein_coding MGP_CASTEiJ_T0074515.1 MGP_CASTEiJ_G0029179.1 mouse_genomes_project 5 125820487 125832279 - MGP_CASTEiJ_P0074515 Zcchc8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074516.1 MGP_CASTEiJ_G0029179.1 mouse_genomes_project 5 125822035 125832318 - MGP_CASTEiJ_P0074516 Zcchc8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074517.1 MGP_CASTEiJ_G0029179.1 mouse_genomes_project 5 125825455 125832230 - MGP_CASTEiJ_P0074517 Zcchc8 protein_coding protein_coding MGP_CASTEiJ_T0014489.1 MGP_CASTEiJ_G0012652.1 mouse_genomes_project 5 59074065 59075857 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071340.1 MGP_CASTEiJ_G0028572.1 mouse_genomes_project 5 31845215 31964933 + MGP_CASTEiJ_P0071340 Fam193a protein_coding protein_coding MGP_CASTEiJ_T0071341.1 MGP_CASTEiJ_G0028572.1 mouse_genomes_project 5 31885476 31969620 + MGP_CASTEiJ_P0071341 Fam193a protein_coding unknown_likely_coding MGP_CASTEiJ_T0071342.1 MGP_CASTEiJ_G0028572.1 mouse_genomes_project 5 31903937 31964224 + MGP_CASTEiJ_P0071342 Fam193a protein_coding protein_coding MGP_CASTEiJ_T0071343.1 MGP_CASTEiJ_G0028572.1 mouse_genomes_project 5 31908744 31921168 + MGP_CASTEiJ_P0071343 Fam193a protein_coding protein_coding MGP_CASTEiJ_T0071344.1 MGP_CASTEiJ_G0028572.1 mouse_genomes_project 5 31921261 31935628 + MGP_CASTEiJ_P0071344 Fam193a protein_coding protein_coding MGP_CASTEiJ_T0071345.1 MGP_CASTEiJ_G0028572.1 mouse_genomes_project 5 31942665 31956137 + MGP_CASTEiJ_P0071345 Fam193a protein_coding protein_coding MGP_CASTEiJ_T0073367.1 MGP_CASTEiJ_G0028973.1 mouse_genomes_project 5 109331335 109345449 - Dgkq protein_coding retained_intron MGP_CASTEiJ_T0073368.1 MGP_CASTEiJ_G0028973.1 mouse_genomes_project 5 109331335 109356859 - MGP_CASTEiJ_P0073368 Dgkq protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073369.1 MGP_CASTEiJ_G0028973.1 mouse_genomes_project 5 109331335 109345449 - MGP_CASTEiJ_P0073369 Dgkq protein_coding protein_coding MGP_CASTEiJ_T0073370.1 MGP_CASTEiJ_G0028973.1 mouse_genomes_project 5 109331335 109345449 - MGP_CASTEiJ_P0073370 Dgkq protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073371.1 MGP_CASTEiJ_G0028973.1 mouse_genomes_project 5 109331335 109345449 - MGP_CASTEiJ_P0073371 Dgkq protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073372.1 MGP_CASTEiJ_G0028973.1 mouse_genomes_project 5 109331689 109345449 - Dgkq protein_coding retained_intron MGP_CASTEiJ_T0073373.1 MGP_CASTEiJ_G0028973.1 mouse_genomes_project 5 109331689 109338298 - Dgkq protein_coding retained_intron MGP_CASTEiJ_T0073374.1 MGP_CASTEiJ_G0028973.1 mouse_genomes_project 5 109331916 109334569 - Dgkq protein_coding retained_intron MGP_CASTEiJ_T0073375.1 MGP_CASTEiJ_G0028973.1 mouse_genomes_project 5 109335500 109338142 - Dgkq protein_coding retained_intron MGP_CASTEiJ_T0073376.1 MGP_CASTEiJ_G0028973.1 mouse_genomes_project 5 109338142 109339766 - Dgkq protein_coding retained_intron MGP_CASTEiJ_T0073377.1 MGP_CASTEiJ_G0028973.1 mouse_genomes_project 5 109339176 109340630 - Dgkq protein_coding retained_intron MGP_CASTEiJ_T0001752.1 MGP_CASTEiJ_G0001675.1 mouse_genomes_project 5 125185182 125186749 + TEC TEC MGP_CASTEiJ_T0073160.1 MGP_CASTEiJ_G0028927.1 mouse_genomes_project 5 105131362 105161715 - protein_coding processed_transcript MGP_CASTEiJ_T0071031.1 MGP_CASTEiJ_G0028525.1 mouse_genomes_project 5 28480841 28484164 - MGP_CASTEiJ_P0071031 Zfp513 protein_coding protein_coding MGP_CASTEiJ_T0071032.1 MGP_CASTEiJ_G0028525.1 mouse_genomes_project 5 28480843 28483903 - MGP_CASTEiJ_P0071032 Zfp513 protein_coding protein_coding MGP_CASTEiJ_T0071033.1 MGP_CASTEiJ_G0028525.1 mouse_genomes_project 5 28481360 28482622 - Zfp513 protein_coding processed_transcript MGP_CASTEiJ_T0071034.1 MGP_CASTEiJ_G0028525.1 mouse_genomes_project 5 28481641 28482147 - MGP_CASTEiJ_P0071034 Zfp513 protein_coding protein_coding MGP_CASTEiJ_T0071035.1 MGP_CASTEiJ_G0028525.1 mouse_genomes_project 5 28481741 28482623 - Zfp513 protein_coding processed_transcript MGP_CASTEiJ_T0071036.1 MGP_CASTEiJ_G0028525.1 mouse_genomes_project 5 28481849 28482623 - Zfp513 protein_coding processed_transcript MGP_CASTEiJ_T0071037.1 MGP_CASTEiJ_G0028525.1 mouse_genomes_project 5 28482529 28484076 - MGP_CASTEiJ_P0071037 Zfp513 protein_coding protein_coding MGP_CASTEiJ_T0071038.1 MGP_CASTEiJ_G0028525.1 mouse_genomes_project 5 28482616 28484086 - MGP_CASTEiJ_P0071038 Zfp513 protein_coding protein_coding MGP_CASTEiJ_T0001504.1 MGP_CASTEiJ_G0001430.1 mouse_genomes_project 5 46695317 46697321 - TEC TEC MGP_CASTEiJ_T0070741.1 MGP_CASTEiJ_G0028475.1 mouse_genomes_project 5 24914246 24965740 - MGP_CASTEiJ_P0070741 Paxip1 protein_coding protein_coding MGP_CASTEiJ_T0070742.1 MGP_CASTEiJ_G0028475.1 mouse_genomes_project 5 24916203 24965589 - MGP_CASTEiJ_P0070742 Paxip1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070743.1 MGP_CASTEiJ_G0028475.1 mouse_genomes_project 5 24918265 24925631 - Paxip1 protein_coding retained_intron MGP_CASTEiJ_T0070744.1 MGP_CASTEiJ_G0028475.1 mouse_genomes_project 5 24933843 24939883 - Paxip1 protein_coding retained_intron MGP_CASTEiJ_T0070745.1 MGP_CASTEiJ_G0028475.1 mouse_genomes_project 5 24946618 24965585 - MGP_CASTEiJ_P0070745 Paxip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070746.1 MGP_CASTEiJ_G0028475.1 mouse_genomes_project 5 24955636 24965881 - Paxip1 protein_coding processed_transcript MGP_CASTEiJ_T0070747.1 MGP_CASTEiJ_G0028475.1 mouse_genomes_project 5 24957764 24965573 - Paxip1 protein_coding retained_intron MGP_CASTEiJ_T0070748.1 MGP_CASTEiJ_G0028475.1 mouse_genomes_project 5 24960722 24964564 - Paxip1 protein_coding retained_intron MGP_CASTEiJ_T0072607.1 MGP_CASTEiJ_G0028791.1 mouse_genomes_project 5 87320987 87334694 - MGP_CASTEiJ_P0072607 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0014538.1 MGP_CASTEiJ_G0012701.1 mouse_genomes_project 5 85777770 85777981 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071580.1 MGP_CASTEiJ_G0028608.1 mouse_genomes_project 5 34935990 34975552 - MGP_CASTEiJ_P0071580 Evc protein_coding protein_coding MGP_CASTEiJ_T0071581.1 MGP_CASTEiJ_G0028608.1 mouse_genomes_project 5 34935996 34975653 - MGP_CASTEiJ_P0071581 Evc protein_coding protein_coding MGP_CASTEiJ_T0071582.1 MGP_CASTEiJ_G0028608.1 mouse_genomes_project 5 34936559 34945236 - MGP_CASTEiJ_P0071582 Evc protein_coding protein_coding MGP_CASTEiJ_T0071583.1 MGP_CASTEiJ_G0028608.1 mouse_genomes_project 5 34937290 34950331 - Evc protein_coding retained_intron MGP_CASTEiJ_T0071584.1 MGP_CASTEiJ_G0028608.1 mouse_genomes_project 5 34937335 34938465 - MGP_CASTEiJ_P0071584 Evc protein_coding protein_coding MGP_CASTEiJ_T0071585.1 MGP_CASTEiJ_G0028608.1 mouse_genomes_project 5 34951231 34975625 - MGP_CASTEiJ_P0071585 Evc protein_coding protein_coding MGP_CASTEiJ_T0071586.1 MGP_CASTEiJ_G0028608.1 mouse_genomes_project 5 34952527 34956340 - Evc protein_coding retained_intron MGP_CASTEiJ_T0071587.1 MGP_CASTEiJ_G0028608.1 mouse_genomes_project 5 34954177 34956458 - Evc protein_coding retained_intron MGP_CASTEiJ_T0071588.1 MGP_CASTEiJ_G0028608.1 mouse_genomes_project 5 34957149 34975637 - Evc protein_coding retained_intron MGP_CASTEiJ_T0075281.1 MGP_CASTEiJ_G0029312.1 mouse_genomes_project 5 139704225 139876721 - MGP_CASTEiJ_P0075281 Col26a1 protein_coding protein_coding MGP_CASTEiJ_T0075282.1 MGP_CASTEiJ_G0029312.1 mouse_genomes_project 5 139704225 139876784 - MGP_CASTEiJ_P0075282 Col26a1 protein_coding protein_coding MGP_CASTEiJ_T0075283.1 MGP_CASTEiJ_G0029312.1 mouse_genomes_project 5 139705220 139707041 - Col26a1 protein_coding retained_intron MGP_CASTEiJ_T0075284.1 MGP_CASTEiJ_G0029312.1 mouse_genomes_project 5 139705539 139710203 - Col26a1 protein_coding retained_intron MGP_CASTEiJ_T0075285.1 MGP_CASTEiJ_G0029312.1 mouse_genomes_project 5 139716008 139876510 - Col26a1 protein_coding retained_intron MGP_CASTEiJ_T0075286.1 MGP_CASTEiJ_G0029312.1 mouse_genomes_project 5 139716753 139718007 - Col26a1 protein_coding retained_intron MGP_CASTEiJ_T0075287.1 MGP_CASTEiJ_G0029312.1 mouse_genomes_project 5 139723344 139876809 - Col26a1 protein_coding retained_intron MGP_CASTEiJ_T0075288.1 MGP_CASTEiJ_G0029312.1 mouse_genomes_project 5 139723518 139748360 - Col26a1 protein_coding processed_transcript MGP_CASTEiJ_T0075289.1 MGP_CASTEiJ_G0029312.1 mouse_genomes_project 5 139731800 139876343 - Col26a1 protein_coding processed_transcript MGP_CASTEiJ_T0075290.1 MGP_CASTEiJ_G0029312.1 mouse_genomes_project 5 139819277 139823734 - Col26a1 protein_coding retained_intron MGP_CASTEiJ_T0075291.1 MGP_CASTEiJ_G0029312.1 mouse_genomes_project 5 139820057 139876530 - Col26a1 protein_coding retained_intron MGP_CASTEiJ_T0008117.1 MGP_CASTEiJ_G0006613.1 mouse_genomes_project 5 117658949 117662607 - Gm13838 lincRNA lincRNA MGP_CASTEiJ_T0001568.1 MGP_CASTEiJ_G0001492.1 mouse_genomes_project 5 63404043 63405766 + TEC TEC MGP_CASTEiJ_T0073999.1 MGP_CASTEiJ_G0029091.1 mouse_genomes_project 5 118798472 118808389 + Wsb2 protein_coding retained_intron MGP_CASTEiJ_T0074000.1 MGP_CASTEiJ_G0029091.1 mouse_genomes_project 5 118798575 118819505 + MGP_CASTEiJ_P0074000 Wsb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0074001.1 MGP_CASTEiJ_G0029091.1 mouse_genomes_project 5 118798575 118819743 + MGP_CASTEiJ_P0074001 Wsb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0074002.1 MGP_CASTEiJ_G0029091.1 mouse_genomes_project 5 118802668 118812510 + Wsb2 protein_coding processed_transcript MGP_CASTEiJ_T0074003.1 MGP_CASTEiJ_G0029091.1 mouse_genomes_project 5 118805162 118819750 + MGP_CASTEiJ_P0074003 Wsb2 protein_coding protein_coding MGP_CASTEiJ_T0074004.1 MGP_CASTEiJ_G0029091.1 mouse_genomes_project 5 118817617 118819433 + Wsb2 protein_coding retained_intron MGP_CASTEiJ_T0074005.1 MGP_CASTEiJ_G0029091.1 mouse_genomes_project 5 118818402 118819468 + Wsb2 protein_coding retained_intron MGP_CASTEiJ_T0008233.1 MGP_CASTEiJ_G0006693.1 mouse_genomes_project 5 151633540 151639445 + D5Ertd605e lincRNA lincRNA MGP_CASTEiJ_T0004509.1 MGP_CASTEiJ_G0003914.1 mouse_genomes_project 5 17964063 17969694 + A630072M18Rik antisense antisense MGP_CASTEiJ_T0001641.1 MGP_CASTEiJ_G0001564.1 mouse_genomes_project 5 75016464 75019716 + TEC TEC MGP_CASTEiJ_T0014477.1 MGP_CASTEiJ_G0012640.1 mouse_genomes_project 5 55507271 55508007 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099874.1 MGP_CASTEiJ_G0036787.1 mouse_genomes_project 5 34254976 34255080 - Gm24878 snRNA snRNA MGP_CASTEiJ_T0010399.1 MGP_CASTEiJ_G0008587.1 mouse_genomes_project 5 100428664 100428740 - Gm23222 miRNA miRNA MGP_CASTEiJ_T0008005.1 MGP_CASTEiJ_G0006542.1 mouse_genomes_project 5 96740657 96741816 - Gm9484 lincRNA lincRNA MGP_CASTEiJ_T0074549.1 MGP_CASTEiJ_G0029184.1 mouse_genomes_project 5 126035009 126061013 + MGP_CASTEiJ_P0074549 Denr protein_coding protein_coding MGP_CASTEiJ_T0074550.1 MGP_CASTEiJ_G0029184.1 mouse_genomes_project 5 126035103 126036344 + Denr protein_coding processed_transcript MGP_CASTEiJ_T0074551.1 MGP_CASTEiJ_G0029184.1 mouse_genomes_project 5 126035109 126039073 + Denr protein_coding retained_intron MGP_CASTEiJ_T0074552.1 MGP_CASTEiJ_G0029184.1 mouse_genomes_project 5 126035116 126036324 + Denr protein_coding retained_intron MGP_CASTEiJ_T0074553.1 MGP_CASTEiJ_G0029184.1 mouse_genomes_project 5 126035323 126055116 + MGP_CASTEiJ_P0074553 Denr protein_coding protein_coding MGP_CASTEiJ_T0073192.1 MGP_CASTEiJ_G0028940.1 mouse_genomes_project 5 106365172 106404400 + MGP_CASTEiJ_P0073192 Zfp326 protein_coding protein_coding MGP_CASTEiJ_T0073193.1 MGP_CASTEiJ_G0028940.1 mouse_genomes_project 5 106365175 106405438 + Zfp326 protein_coding retained_intron MGP_CASTEiJ_T0073194.1 MGP_CASTEiJ_G0028940.1 mouse_genomes_project 5 106365175 106376751 + Zfp326 protein_coding retained_intron MGP_CASTEiJ_T0073195.1 MGP_CASTEiJ_G0028940.1 mouse_genomes_project 5 106365175 106405438 + MGP_CASTEiJ_P0073195 Zfp326 protein_coding protein_coding MGP_CASTEiJ_T0073196.1 MGP_CASTEiJ_G0028940.1 mouse_genomes_project 5 106365183 106404797 + MGP_CASTEiJ_P0073196 Zfp326 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073197.1 MGP_CASTEiJ_G0028940.1 mouse_genomes_project 5 106365578 106374909 + Zfp326 protein_coding processed_transcript MGP_CASTEiJ_T0073198.1 MGP_CASTEiJ_G0028940.1 mouse_genomes_project 5 106367406 106397192 + Zfp326 protein_coding retained_intron MGP_CASTEiJ_T0073199.1 MGP_CASTEiJ_G0028940.1 mouse_genomes_project 5 106379662 106385217 + Zfp326 protein_coding retained_intron MGP_CASTEiJ_T0073200.1 MGP_CASTEiJ_G0028940.1 mouse_genomes_project 5 106393491 106397602 + Zfp326 protein_coding retained_intron MGP_CASTEiJ_T0072891.1 MGP_CASTEiJ_G0028866.1 mouse_genomes_project 5 93262998 93266893 - MGP_CASTEiJ_P0072891 Sowahb protein_coding protein_coding MGP_CASTEiJ_T0072578.1 MGP_CASTEiJ_G0028778.1 mouse_genomes_project 5 86310928 86346272 - MGP_CASTEiJ_P0072578 Tmprss11g protein_coding protein_coding MGP_CASTEiJ_T0072579.1 MGP_CASTEiJ_G0028778.1 mouse_genomes_project 5 86311421 86346243 - MGP_CASTEiJ_P0072579 Tmprss11g protein_coding protein_coding MGP_CASTEiJ_T0072580.1 MGP_CASTEiJ_G0028778.1 mouse_genomes_project 5 86313407 86315696 - Tmprss11g protein_coding retained_intron MGP_CASTEiJ_T0001388.1 MGP_CASTEiJ_G0001317.1 mouse_genomes_project 5 5703470 5708558 - TEC TEC MGP_CASTEiJ_T0072618.1 MGP_CASTEiJ_G0028798.1 mouse_genomes_project 5 87584610 87593407 + Csn1s1 protein_coding retained_intron MGP_CASTEiJ_T0072619.1 MGP_CASTEiJ_G0028798.1 mouse_genomes_project 5 87584610 87585885 + Csn1s1 protein_coding retained_intron MGP_CASTEiJ_T0072620.1 MGP_CASTEiJ_G0028798.1 mouse_genomes_project 5 87584610 87585943 + Csn1s1 protein_coding retained_intron MGP_CASTEiJ_T0072621.1 MGP_CASTEiJ_G0028798.1 mouse_genomes_project 5 87584629 87593015 + MGP_CASTEiJ_P0072621 Csn1s1 protein_coding protein_coding MGP_CASTEiJ_T0072622.1 MGP_CASTEiJ_G0028798.1 mouse_genomes_project 5 87584630 87603410 + MGP_CASTEiJ_P0072622 Csn1s1 protein_coding protein_coding MGP_CASTEiJ_T0072623.1 MGP_CASTEiJ_G0028798.1 mouse_genomes_project 5 87584635 87603410 + MGP_CASTEiJ_P0072623 Csn1s1 protein_coding protein_coding MGP_CASTEiJ_T0072624.1 MGP_CASTEiJ_G0028798.1 mouse_genomes_project 5 87585250 87593869 + Csn1s1 protein_coding processed_transcript MGP_CASTEiJ_T0072625.1 MGP_CASTEiJ_G0028798.1 mouse_genomes_project 5 87585640 87588524 + Csn1s1 protein_coding retained_intron MGP_CASTEiJ_T0072626.1 MGP_CASTEiJ_G0028798.1 mouse_genomes_project 5 87590281 87591218 + Csn1s1 protein_coding retained_intron MGP_CASTEiJ_T0072627.1 MGP_CASTEiJ_G0028798.1 mouse_genomes_project 5 87597785 87599995 + Csn1s1 protein_coding retained_intron MGP_CASTEiJ_T0072628.1 MGP_CASTEiJ_G0028798.1 mouse_genomes_project 5 87598098 87603330 + Csn1s1 protein_coding retained_intron MGP_CASTEiJ_T0072629.1 MGP_CASTEiJ_G0028798.1 mouse_genomes_project 5 87599672 87603356 + Csn1s1 protein_coding retained_intron MGP_CASTEiJ_T0072630.1 MGP_CASTEiJ_G0028798.1 mouse_genomes_project 5 87601358 87602890 + Csn1s1 protein_coding retained_intron MGP_CASTEiJ_T0071113.1 MGP_CASTEiJ_G0028537.1 mouse_genomes_project 5 28807000 28809426 + Slc4a1ap protein_coding retained_intron MGP_CASTEiJ_T0071114.1 MGP_CASTEiJ_G0028537.1 mouse_genomes_project 5 28807000 28833847 + MGP_CASTEiJ_P0071114 Slc4a1ap protein_coding protein_coding MGP_CASTEiJ_T0071115.1 MGP_CASTEiJ_G0028537.1 mouse_genomes_project 5 28807002 28814435 + Slc4a1ap protein_coding retained_intron MGP_CASTEiJ_T0071116.1 MGP_CASTEiJ_G0028537.1 mouse_genomes_project 5 28807017 28816823 + MGP_CASTEiJ_P0071116 Slc4a1ap protein_coding protein_coding MGP_CASTEiJ_T0071117.1 MGP_CASTEiJ_G0028537.1 mouse_genomes_project 5 28807017 28833852 + MGP_CASTEiJ_P0071117 Slc4a1ap protein_coding protein_coding MGP_CASTEiJ_T0071118.1 MGP_CASTEiJ_G0028537.1 mouse_genomes_project 5 28807027 28838939 + MGP_CASTEiJ_P0071118 Slc4a1ap protein_coding protein_coding MGP_CASTEiJ_T0071119.1 MGP_CASTEiJ_G0028537.1 mouse_genomes_project 5 28807606 28812245 + Slc4a1ap protein_coding retained_intron MGP_CASTEiJ_T0071120.1 MGP_CASTEiJ_G0028537.1 mouse_genomes_project 5 28811989 28814973 + Slc4a1ap protein_coding retained_intron MGP_CASTEiJ_T0071121.1 MGP_CASTEiJ_G0028537.1 mouse_genomes_project 5 28816083 28833818 + MGP_CASTEiJ_P0071121 Slc4a1ap protein_coding protein_coding MGP_CASTEiJ_T0071122.1 MGP_CASTEiJ_G0028537.1 mouse_genomes_project 5 28823554 28833848 + Slc4a1ap protein_coding retained_intron MGP_CASTEiJ_T0071123.1 MGP_CASTEiJ_G0028537.1 mouse_genomes_project 5 28823740 28833852 + MGP_CASTEiJ_P0071123 Slc4a1ap protein_coding protein_coding MGP_CASTEiJ_T0071124.1 MGP_CASTEiJ_G0028537.1 mouse_genomes_project 5 28823818 28833777 + MGP_CASTEiJ_P0071124 Slc4a1ap protein_coding protein_coding MGP_CASTEiJ_T0071125.1 MGP_CASTEiJ_G0028537.1 mouse_genomes_project 5 28830373 28836722 + Slc4a1ap protein_coding processed_transcript MGP_CASTEiJ_T0014673.1 MGP_CASTEiJ_G0012836.1 mouse_genomes_project 5 148167597 148167810 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001655.1 MGP_CASTEiJ_G0001578.1 mouse_genomes_project 5 93312690 93314831 + TEC TEC MGP_CASTEiJ_T0001776.1 MGP_CASTEiJ_G0001698.1 mouse_genomes_project 5 132035283 132037491 + TEC TEC MGP_CASTEiJ_T0070507.1 MGP_CASTEiJ_G0028432.1 mouse_genomes_project 5 18851615 18870772 + MGP_CASTEiJ_P0070507 Psmc2 protein_coding protein_coding MGP_CASTEiJ_T0070508.1 MGP_CASTEiJ_G0028432.1 mouse_genomes_project 5 18854035 18870778 + MGP_CASTEiJ_P0070508 Psmc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0001634.1 MGP_CASTEiJ_G0001557.1 mouse_genomes_project 5 73325893 73326365 - TEC TEC MGP_CASTEiJ_T0001552.1 MGP_CASTEiJ_G0001477.1 mouse_genomes_project 5 56206159 56207626 + TEC TEC MGP_CASTEiJ_T0001694.1 MGP_CASTEiJ_G0001617.1 mouse_genomes_project 5 111899049 111899783 + TEC TEC MGP_CASTEiJ_T0099875.1 MGP_CASTEiJ_G0036788.1 mouse_genomes_project 5 36221765 36221901 + Gm22249 snRNA snRNA MGP_CASTEiJ_T0070723.1 MGP_CASTEiJ_G0028471.1 mouse_genomes_project 5 22723027 22724988 + MGP_CASTEiJ_P0070723 Cct8l1 protein_coding protein_coding MGP_CASTEiJ_T0007929.1 MGP_CASTEiJ_G0006479.1 mouse_genomes_project 5 50652677 50664117 - 8030423F21Rik lincRNA lincRNA MGP_CASTEiJ_T0070130.1 MGP_CASTEiJ_G0028370.1 mouse_genomes_project 5 424340 450455 + MGP_CASTEiJ_P0070130 Fam133b protein_coding protein_coding MGP_CASTEiJ_T0070131.1 MGP_CASTEiJ_G0028370.1 mouse_genomes_project 5 424343 441341 + Fam133b protein_coding retained_intron MGP_CASTEiJ_T0070132.1 MGP_CASTEiJ_G0028370.1 mouse_genomes_project 5 424345 449958 + MGP_CASTEiJ_P0070132 Fam133b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070133.1 MGP_CASTEiJ_G0028370.1 mouse_genomes_project 5 424345 449958 + MGP_CASTEiJ_P0070133 Fam133b protein_coding protein_coding MGP_CASTEiJ_T0070134.1 MGP_CASTEiJ_G0028370.1 mouse_genomes_project 5 424351 450031 + Fam133b protein_coding retained_intron MGP_CASTEiJ_T0070135.1 MGP_CASTEiJ_G0028370.1 mouse_genomes_project 5 439955 444878 + Fam133b protein_coding retained_intron MGP_CASTEiJ_T0070136.1 MGP_CASTEiJ_G0028370.1 mouse_genomes_project 5 445193 445885 + Fam133b protein_coding retained_intron MGP_CASTEiJ_T0070137.1 MGP_CASTEiJ_G0028370.1 mouse_genomes_project 5 446991 449249 + Fam133b protein_coding retained_intron MGP_CASTEiJ_T0074083.1 MGP_CASTEiJ_G0029109.1 mouse_genomes_project 5 122245917 122269086 + MGP_CASTEiJ_P0074083 Slc8b1 protein_coding protein_coding MGP_CASTEiJ_T0074084.1 MGP_CASTEiJ_G0029109.1 mouse_genomes_project 5 122245984 122269081 + MGP_CASTEiJ_P0074084 Slc8b1 protein_coding protein_coding MGP_CASTEiJ_T0074085.1 MGP_CASTEiJ_G0029109.1 mouse_genomes_project 5 122246001 122269082 + MGP_CASTEiJ_P0074085 Slc8b1 protein_coding protein_coding MGP_CASTEiJ_T0074086.1 MGP_CASTEiJ_G0029109.1 mouse_genomes_project 5 122246019 122247938 + MGP_CASTEiJ_P0074086 Slc8b1 protein_coding protein_coding MGP_CASTEiJ_T0074087.1 MGP_CASTEiJ_G0029109.1 mouse_genomes_project 5 122247615 122254449 + MGP_CASTEiJ_P0074087 Slc8b1 protein_coding protein_coding MGP_CASTEiJ_T0074088.1 MGP_CASTEiJ_G0029109.1 mouse_genomes_project 5 122255474 122256928 + Slc8b1 protein_coding retained_intron MGP_CASTEiJ_T0014406.1 MGP_CASTEiJ_G0012569.1 mouse_genomes_project 5 23285431 23286441 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001662.1 MGP_CASTEiJ_G0001585.1 mouse_genomes_project 5 96676992 96677477 + TEC TEC MGP_CASTEiJ_T0076293.1 MGP_CASTEiJ_G0029512.1 mouse_genomes_project 5 155516566 155561405 + MGP_CASTEiJ_P0076293 Kl protein_coding protein_coding MGP_CASTEiJ_T0076294.1 MGP_CASTEiJ_G0029512.1 mouse_genomes_project 5 155516663 155554016 + Kl protein_coding retained_intron MGP_CASTEiJ_T0076230.1 MGP_CASTEiJ_G0029504.1 mouse_genomes_project 5 154111922 154205912 + MGP_CASTEiJ_P0076230 B3glct protein_coding protein_coding MGP_CASTEiJ_T0076231.1 MGP_CASTEiJ_G0029504.1 mouse_genomes_project 5 154182664 154194420 + B3glct protein_coding processed_transcript MGP_CASTEiJ_T0076232.1 MGP_CASTEiJ_G0029504.1 mouse_genomes_project 5 154197245 154203917 + B3glct protein_coding retained_intron MGP_CASTEiJ_T0075979.1 MGP_CASTEiJ_G0029456.1 mouse_genomes_project 5 148780996 148818585 - MGP_CASTEiJ_P0075979 Kpna7 protein_coding protein_coding MGP_CASTEiJ_T0075980.1 MGP_CASTEiJ_G0029456.1 mouse_genomes_project 5 148781205 148817566 - MGP_CASTEiJ_P0075980 Kpna7 protein_coding protein_coding MGP_CASTEiJ_T0075981.1 MGP_CASTEiJ_G0029456.1 mouse_genomes_project 5 148783152 148813249 - MGP_CASTEiJ_P0075981 Kpna7 protein_coding protein_coding MGP_CASTEiJ_T0075982.1 MGP_CASTEiJ_G0029456.1 mouse_genomes_project 5 148792870 148809492 - Kpna7 protein_coding processed_transcript MGP_CASTEiJ_T0075983.1 MGP_CASTEiJ_G0029456.1 mouse_genomes_project 5 148805891 148817336 - MGP_CASTEiJ_P0075983 Kpna7 protein_coding protein_coding MGP_CASTEiJ_T0075984.1 MGP_CASTEiJ_G0029456.1 mouse_genomes_project 5 148812491 148903116 - MGP_CASTEiJ_P0075984 Kpna7 protein_coding protein_coding MGP_CASTEiJ_T0075893.1 MGP_CASTEiJ_G0029438.1 mouse_genomes_project 5 147463402 147487956 - MGP_CASTEiJ_P0075893 Usp42 protein_coding protein_coding MGP_CASTEiJ_T0075894.1 MGP_CASTEiJ_G0029438.1 mouse_genomes_project 5 147464159 147487938 - MGP_CASTEiJ_P0075894 Usp42 protein_coding unknown_likely_coding MGP_CASTEiJ_T0075895.1 MGP_CASTEiJ_G0029438.1 mouse_genomes_project 5 147466831 147468691 - Usp42 protein_coding processed_transcript MGP_CASTEiJ_T0075896.1 MGP_CASTEiJ_G0029438.1 mouse_genomes_project 5 147466846 147470283 - Usp42 protein_coding retained_intron MGP_CASTEiJ_T0075897.1 MGP_CASTEiJ_G0029438.1 mouse_genomes_project 5 147469500 147481755 - Usp42 protein_coding retained_intron MGP_CASTEiJ_T0075898.1 MGP_CASTEiJ_G0029438.1 mouse_genomes_project 5 147474731 147476024 - Usp42 protein_coding retained_intron MGP_CASTEiJ_T0001627.1 MGP_CASTEiJ_G0001550.1 mouse_genomes_project 5 72309866 72310385 - TEC TEC MGP_CASTEiJ_T0073395.1 MGP_CASTEiJ_G0028977.1 mouse_genomes_project 5 109425137 109445490 - MGP_CASTEiJ_P0073395 Rnf212 protein_coding protein_coding MGP_CASTEiJ_T0073396.1 MGP_CASTEiJ_G0028977.1 mouse_genomes_project 5 109425161 109446960 - MGP_CASTEiJ_P0073396 Rnf212 protein_coding protein_coding MGP_CASTEiJ_T0073397.1 MGP_CASTEiJ_G0028977.1 mouse_genomes_project 5 109425599 109471879 - MGP_CASTEiJ_P0073397 Rnf212 protein_coding protein_coding MGP_CASTEiJ_T0073398.1 MGP_CASTEiJ_G0028977.1 mouse_genomes_project 5 109427433 109445490 - MGP_CASTEiJ_P0073398 Rnf212 protein_coding protein_coding MGP_CASTEiJ_T0014434.1 MGP_CASTEiJ_G0012597.1 mouse_genomes_project 5 31147039 31147289 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072608.1 MGP_CASTEiJ_G0028792.1 mouse_genomes_project 5 87365088 87399806 - MGP_CASTEiJ_P0072608 protein_coding protein_coding MGP_CASTEiJ_T0099906.1 MGP_CASTEiJ_G0036819.1 mouse_genomes_project 5 105256092 105256199 + Gm24097 snRNA snRNA MGP_CASTEiJ_T0010385.1 MGP_CASTEiJ_G0008573.1 mouse_genomes_project 5 63591637 63591715 + Mir574 miRNA miRNA MGP_CASTEiJ_T0010426.1 MGP_CASTEiJ_G0008614.1 mouse_genomes_project 5 139317117 139317205 - Mir721 miRNA miRNA MGP_CASTEiJ_T0007918.1 MGP_CASTEiJ_G0006469.1 mouse_genomes_project 5 42164792 42184360 - Gm42985 lincRNA lincRNA MGP_CASTEiJ_T0008267.1 MGP_CASTEiJ_G0006717.1 mouse_genomes_project 5 155083588 155083854 - Gm43690 lincRNA lincRNA MGP_CASTEiJ_T0071135.1 MGP_CASTEiJ_G0028539.1 mouse_genomes_project 5 28910526 28928885 - Rbks protein_coding processed_transcript MGP_CASTEiJ_T0071136.1 MGP_CASTEiJ_G0028539.1 mouse_genomes_project 5 28910526 28993080 - MGP_CASTEiJ_P0071136 Rbks protein_coding protein_coding MGP_CASTEiJ_T0071139.1 MGP_CASTEiJ_G0028539.1 mouse_genomes_project 5 28948391 28979284 - Rbks protein_coding processed_transcript MGP_CASTEiJ_T0073201.1 MGP_CASTEiJ_G0028941.1 mouse_genomes_project 5 106993811 106999441 - MGP_CASTEiJ_P0073201 Barhl2 protein_coding protein_coding MGP_CASTEiJ_T0075018.1 MGP_CASTEiJ_G0029262.1 mouse_genomes_project 5 137391824 137402211 + Rfc2 protein_coding processed_transcript MGP_CASTEiJ_T0075019.1 MGP_CASTEiJ_G0029262.1 mouse_genomes_project 5 137393126 137415503 + MGP_CASTEiJ_P0075019 Rfc2 protein_coding protein_coding MGP_CASTEiJ_T0075020.1 MGP_CASTEiJ_G0029262.1 mouse_genomes_project 5 137393193 137402634 + Rfc2 protein_coding retained_intron MGP_CASTEiJ_T0075021.1 MGP_CASTEiJ_G0029262.1 mouse_genomes_project 5 137402529 137409950 + MGP_CASTEiJ_P0075021 Rfc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075022.1 MGP_CASTEiJ_G0029262.1 mouse_genomes_project 5 137404695 137407340 + Rfc2 protein_coding retained_intron MGP_CASTEiJ_T0075023.1 MGP_CASTEiJ_G0029262.1 mouse_genomes_project 5 137406145 137410332 + Rfc2 protein_coding retained_intron MGP_CASTEiJ_T0072146.1 MGP_CASTEiJ_G0028701.1 mouse_genomes_project 5 66087029 66091001 + MGP_CASTEiJ_P0072146 Tmem33 protein_coding protein_coding MGP_CASTEiJ_T0072147.1 MGP_CASTEiJ_G0028701.1 mouse_genomes_project 5 66087074 66113851 + MGP_CASTEiJ_P0072147 Tmem33 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072148.1 MGP_CASTEiJ_G0028701.1 mouse_genomes_project 5 66087075 66118654 + MGP_CASTEiJ_P0072148 Tmem33 protein_coding protein_coding MGP_CASTEiJ_T0072149.1 MGP_CASTEiJ_G0028701.1 mouse_genomes_project 5 66087082 66090668 + MGP_CASTEiJ_P0072149 Tmem33 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072150.1 MGP_CASTEiJ_G0028701.1 mouse_genomes_project 5 66087132 66089470 + Tmem33 protein_coding retained_intron MGP_CASTEiJ_T0072151.1 MGP_CASTEiJ_G0028701.1 mouse_genomes_project 5 66087274 66095379 + Tmem33 protein_coding retained_intron MGP_CASTEiJ_T0072152.1 MGP_CASTEiJ_G0028701.1 mouse_genomes_project 5 66087367 66118802 + MGP_CASTEiJ_P0072152 Tmem33 protein_coding protein_coding MGP_CASTEiJ_T0075053.1 MGP_CASTEiJ_G0029268.1 mouse_genomes_project 5 137759358 137760635 - MGP_CASTEiJ_P0075053 Cldn13 protein_coding protein_coding MGP_CASTEiJ_T0074189.1 MGP_CASTEiJ_G0029131.1 mouse_genomes_project 5 123395874 123399025 - MGP_CASTEiJ_P0074189 protein_coding protein_coding MGP_CASTEiJ_T0014475.1 MGP_CASTEiJ_G0012638.1 mouse_genomes_project 5 54337547 54337860 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008100.1 MGP_CASTEiJ_G0006602.1 mouse_genomes_project 5 113654128 113659614 + Gm42865 lincRNA lincRNA MGP_CASTEiJ_T0001601.1 MGP_CASTEiJ_G0001525.1 mouse_genomes_project 5 65785318 65787452 + TEC TEC MGP_CASTEiJ_T0014436.1 MGP_CASTEiJ_G0012599.1 mouse_genomes_project 5 31522252 31522709 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004741.1 MGP_CASTEiJ_G0004086.1 mouse_genomes_project 5 143507998 143514415 + Gm16121 antisense antisense MGP_CASTEiJ_T0075666.1 MGP_CASTEiJ_G0029385.1 mouse_genomes_project 5 142733607 142735971 + Gpr146 protein_coding processed_transcript MGP_CASTEiJ_T0075667.1 MGP_CASTEiJ_G0029385.1 mouse_genomes_project 5 142733652 142735972 + Gpr146 protein_coding processed_transcript MGP_CASTEiJ_T0075668.1 MGP_CASTEiJ_G0029385.1 mouse_genomes_project 5 142734073 142749857 + MGP_CASTEiJ_P0075668 Gpr146 protein_coding protein_coding MGP_CASTEiJ_T0075669.1 MGP_CASTEiJ_G0029385.1 mouse_genomes_project 5 142734130 142735171 + MGP_CASTEiJ_P0075669 Gpr146 protein_coding protein_coding MGP_CASTEiJ_T0075670.1 MGP_CASTEiJ_G0029385.1 mouse_genomes_project 5 142736513 142753568 + MGP_CASTEiJ_P0075670 Gpr146 protein_coding protein_coding MGP_CASTEiJ_T0075671.1 MGP_CASTEiJ_G0029385.1 mouse_genomes_project 5 142746841 142753567 + MGP_CASTEiJ_P0075671 Gpr146 protein_coding protein_coding MGP_CASTEiJ_T0001790.1 MGP_CASTEiJ_G0001712.1 mouse_genomes_project 5 134342852 134344007 - TEC TEC MGP_CASTEiJ_T0072668.1 MGP_CASTEiJ_G0028807.1 mouse_genomes_project 5 87951661 87953767 + MGP_CASTEiJ_P0072668 Cabs1 protein_coding protein_coding MGP_CASTEiJ_T0011257.1 MGP_CASTEiJ_G0009445.1 mouse_genomes_project 5 5987431 5987573 - Gm27941 misc_RNA misc_RNA MGP_CASTEiJ_T0008121.1 MGP_CASTEiJ_G0006617.1 mouse_genomes_project 5 118217999 118222669 + lincRNA lincRNA MGP_CASTEiJ_T0074113.1 MGP_CASTEiJ_G0029116.1 mouse_genomes_project 5 122433937 122453208 - MGP_CASTEiJ_P0074113 Dtx1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0074114.1 MGP_CASTEiJ_G0029116.1 mouse_genomes_project 5 122434475 122466203 - MGP_CASTEiJ_P0074114 Dtx1 protein_coding protein_coding MGP_CASTEiJ_T0074115.1 MGP_CASTEiJ_G0029116.1 mouse_genomes_project 5 122434476 122449729 - Dtx1 protein_coding retained_intron MGP_CASTEiJ_T0074116.1 MGP_CASTEiJ_G0029116.1 mouse_genomes_project 5 122434522 122436386 - Dtx1 protein_coding retained_intron MGP_CASTEiJ_T0074117.1 MGP_CASTEiJ_G0029116.1 mouse_genomes_project 5 122435472 122437222 - Dtx1 protein_coding retained_intron MGP_CASTEiJ_T0074118.1 MGP_CASTEiJ_G0029116.1 mouse_genomes_project 5 122435722 122437120 - Dtx1 protein_coding retained_intron MGP_CASTEiJ_T0074119.1 MGP_CASTEiJ_G0029116.1 mouse_genomes_project 5 122449046 122460213 - Dtx1 protein_coding processed_transcript MGP_CASTEiJ_T0098977.1 MGP_CASTEiJ_G0035900.1 mouse_genomes_project 5 137083059 137083453 - Gm43480 sense_intronic sense_intronic MGP_CASTEiJ_T0076136.1 MGP_CASTEiJ_G0029490.1 mouse_genomes_project 5 152104559 152106767 + Pomp protein_coding retained_intron MGP_CASTEiJ_T0076137.1 MGP_CASTEiJ_G0029490.1 mouse_genomes_project 5 152104575 152117013 + MGP_CASTEiJ_P0076137 Pomp protein_coding protein_coding MGP_CASTEiJ_T0076138.1 MGP_CASTEiJ_G0029490.1 mouse_genomes_project 5 152104611 152122982 + MGP_CASTEiJ_P0076138 Pomp protein_coding protein_coding MGP_CASTEiJ_T0076139.1 MGP_CASTEiJ_G0029490.1 mouse_genomes_project 5 152114305 152123062 + Pomp protein_coding processed_transcript MGP_CASTEiJ_T0076140.1 MGP_CASTEiJ_G0029490.1 mouse_genomes_project 5 152116379 152123020 + Pomp protein_coding retained_intron MGP_CASTEiJ_T0008007.1 MGP_CASTEiJ_G0006544.1 mouse_genomes_project 5 96955257 96970718 + Gm2861 lincRNA lincRNA MGP_CASTEiJ_T0014433.1 MGP_CASTEiJ_G0012596.1 mouse_genomes_project 5 30696020 30697060 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004567.1 MGP_CASTEiJ_G0003960.1 mouse_genomes_project 5 51649699 51650667 - Gm42747 antisense antisense MGP_CASTEiJ_T0008042.1 MGP_CASTEiJ_G0006567.1 mouse_genomes_project 5 105872877 105878547 + Gm26519 lincRNA lincRNA MGP_CASTEiJ_T0001466.1 MGP_CASTEiJ_G0001392.1 mouse_genomes_project 5 40961980 40963192 + TEC TEC MGP_CASTEiJ_T0071984.1 MGP_CASTEiJ_G0028680.1 mouse_genomes_project 5 63766961 63769394 + Klhl5 protein_coding retained_intron MGP_CASTEiJ_T0071985.1 MGP_CASTEiJ_G0028680.1 mouse_genomes_project 5 63767209 63804162 + MGP_CASTEiJ_P0071985 Klhl5 protein_coding protein_coding MGP_CASTEiJ_T0071986.1 MGP_CASTEiJ_G0028680.1 mouse_genomes_project 5 63767215 63770340 + Klhl5 protein_coding processed_transcript MGP_CASTEiJ_T0071987.1 MGP_CASTEiJ_G0028680.1 mouse_genomes_project 5 63767483 63789398 + Klhl5 protein_coding processed_transcript MGP_CASTEiJ_T0071988.1 MGP_CASTEiJ_G0028680.1 mouse_genomes_project 5 63791800 63804157 + MGP_CASTEiJ_P0071988 Klhl5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071451.1 MGP_CASTEiJ_G0028586.1 mouse_genomes_project 5 32929655 32941851 + MGP_CASTEiJ_P0071451 Hmx1 protein_coding protein_coding MGP_CASTEiJ_T0071452.1 MGP_CASTEiJ_G0028586.1 mouse_genomes_project 5 32929664 32933437 + MGP_CASTEiJ_P0071452 Hmx1 protein_coding protein_coding MGP_CASTEiJ_T0073468.1 MGP_CASTEiJ_G0028991.1 mouse_genomes_project 5 111167303 111179174 + Lrcol1 protein_coding retained_intron MGP_CASTEiJ_T0073469.1 MGP_CASTEiJ_G0028991.1 mouse_genomes_project 5 111167303 111179174 + MGP_CASTEiJ_P0073469 Lrcol1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073470.1 MGP_CASTEiJ_G0028991.1 mouse_genomes_project 5 111167303 111179174 + MGP_CASTEiJ_P0073470 Lrcol1 protein_coding protein_coding MGP_CASTEiJ_T0073471.1 MGP_CASTEiJ_G0028991.1 mouse_genomes_project 5 111176997 111179246 + MGP_CASTEiJ_P0073471 Lrcol1 protein_coding protein_coding MGP_CASTEiJ_T0073472.1 MGP_CASTEiJ_G0028991.1 mouse_genomes_project 5 111177059 111179184 + MGP_CASTEiJ_P0073472 Lrcol1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073249.1 MGP_CASTEiJ_G0028950.1 mouse_genomes_project 5 108059783 108116373 + MGP_CASTEiJ_P0073249 protein_coding protein_coding MGP_CASTEiJ_T0073250.1 MGP_CASTEiJ_G0028950.1 mouse_genomes_project 5 108075076 108093788 + protein_coding processed_transcript MGP_CASTEiJ_T0075683.1 MGP_CASTEiJ_G0029389.1 mouse_genomes_project 5 142907516 142912194 + MGP_CASTEiJ_P0075683 Uncx protein_coding protein_coding MGP_CASTEiJ_T0075684.1 MGP_CASTEiJ_G0029389.1 mouse_genomes_project 5 142907920 142909292 + MGP_CASTEiJ_P0075684 Uncx protein_coding protein_coding MGP_CASTEiJ_T0072373.1 MGP_CASTEiJ_G0028742.1 mouse_genomes_project 5 73678353 73777628 - MGP_CASTEiJ_P0072373 Lnx1 protein_coding protein_coding MGP_CASTEiJ_T0072374.1 MGP_CASTEiJ_G0028742.1 mouse_genomes_project 5 73678353 73769951 - MGP_CASTEiJ_P0072374 Lnx1 protein_coding protein_coding MGP_CASTEiJ_T0072375.1 MGP_CASTEiJ_G0028742.1 mouse_genomes_project 5 73678353 73769952 - MGP_CASTEiJ_P0072375 Lnx1 protein_coding protein_coding MGP_CASTEiJ_T0072376.1 MGP_CASTEiJ_G0028742.1 mouse_genomes_project 5 73678585 73769937 - MGP_CASTEiJ_P0072376 Lnx1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072378.1 MGP_CASTEiJ_G0028742.1 mouse_genomes_project 5 73683007 73794342 - MGP_CASTEiJ_P0072378 Lnx1 protein_coding protein_coding MGP_CASTEiJ_T0072379.1 MGP_CASTEiJ_G0028742.1 mouse_genomes_project 5 73683007 73769708 - MGP_CASTEiJ_P0072379 Lnx1 protein_coding protein_coding MGP_CASTEiJ_T0072380.1 MGP_CASTEiJ_G0028742.1 mouse_genomes_project 5 73683007 73769952 - MGP_CASTEiJ_P0072380 Lnx1 protein_coding protein_coding MGP_CASTEiJ_T0072381.1 MGP_CASTEiJ_G0028742.1 mouse_genomes_project 5 73683007 73769879 - MGP_CASTEiJ_P0072381 Lnx1 protein_coding protein_coding MGP_CASTEiJ_T0072382.1 MGP_CASTEiJ_G0028742.1 mouse_genomes_project 5 73683679 73711654 - MGP_CASTEiJ_P0072382 Lnx1 protein_coding protein_coding MGP_CASTEiJ_T0072383.1 MGP_CASTEiJ_G0028742.1 mouse_genomes_project 5 73696540 73777572 - MGP_CASTEiJ_P0072383 Lnx1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0004644.1 MGP_CASTEiJ_G0004018.1 mouse_genomes_project 5 113332874 113336149 - Gm20636 antisense antisense MGP_CASTEiJ_T0070509.1 MGP_CASTEiJ_G0028433.1 mouse_genomes_project 5 18880689 18940429 - MGP_CASTEiJ_P0070509 Slc26a5 protein_coding protein_coding MGP_CASTEiJ_T0070510.1 MGP_CASTEiJ_G0028433.1 mouse_genomes_project 5 18880689 18936833 - MGP_CASTEiJ_P0070510 Slc26a5 protein_coding protein_coding MGP_CASTEiJ_T0070511.1 MGP_CASTEiJ_G0028433.1 mouse_genomes_project 5 18881047 18919798 - MGP_CASTEiJ_P0070511 Slc26a5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070512.1 MGP_CASTEiJ_G0028433.1 mouse_genomes_project 5 18881178 18919750 - MGP_CASTEiJ_P0070512 Slc26a5 protein_coding protein_coding MGP_CASTEiJ_T0070513.1 MGP_CASTEiJ_G0028433.1 mouse_genomes_project 5 18885715 18892769 - Slc26a5 protein_coding retained_intron MGP_CASTEiJ_T0073705.1 MGP_CASTEiJ_G0029036.1 mouse_genomes_project 5 115250311 115258985 + MGP_CASTEiJ_P0073705 Ung protein_coding protein_coding MGP_CASTEiJ_T0073706.1 MGP_CASTEiJ_G0029036.1 mouse_genomes_project 5 115251154 115258989 + MGP_CASTEiJ_P0073706 Ung protein_coding protein_coding MGP_CASTEiJ_T0073707.1 MGP_CASTEiJ_G0029036.1 mouse_genomes_project 5 115251154 115258052 + MGP_CASTEiJ_P0073707 Ung protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073708.1 MGP_CASTEiJ_G0029036.1 mouse_genomes_project 5 115251932 115257977 + MGP_CASTEiJ_P0073708 Ung protein_coding protein_coding MGP_CASTEiJ_T0073709.1 MGP_CASTEiJ_G0029036.1 mouse_genomes_project 5 115252004 115255051 + Ung protein_coding retained_intron MGP_CASTEiJ_T0073606.1 MGP_CASTEiJ_G0029018.1 mouse_genomes_project 5 114084535 114089372 - MGP_CASTEiJ_P0073606 Crybb3 protein_coding protein_coding MGP_CASTEiJ_T0073607.1 MGP_CASTEiJ_G0029018.1 mouse_genomes_project 5 114084535 114089815 - MGP_CASTEiJ_P0073607 Crybb3 protein_coding protein_coding MGP_CASTEiJ_T0073608.1 MGP_CASTEiJ_G0029018.1 mouse_genomes_project 5 114084535 114090288 - MGP_CASTEiJ_P0073608 Crybb3 protein_coding protein_coding MGP_CASTEiJ_T0073609.1 MGP_CASTEiJ_G0029018.1 mouse_genomes_project 5 114084539 114089815 - MGP_CASTEiJ_P0073609 Crybb3 protein_coding protein_coding MGP_CASTEiJ_T0073610.1 MGP_CASTEiJ_G0029018.1 mouse_genomes_project 5 114084543 114090287 - MGP_CASTEiJ_P0073610 Crybb3 protein_coding protein_coding MGP_CASTEiJ_T0073611.1 MGP_CASTEiJ_G0029018.1 mouse_genomes_project 5 114085722 114089096 - Crybb3 protein_coding retained_intron MGP_CASTEiJ_T0073612.1 MGP_CASTEiJ_G0029018.1 mouse_genomes_project 5 114085987 114089371 - Crybb3 protein_coding retained_intron MGP_CASTEiJ_T0073613.1 MGP_CASTEiJ_G0029018.1 mouse_genomes_project 5 114087094 114089358 - MGP_CASTEiJ_P0073613 Crybb3 protein_coding protein_coding MGP_CASTEiJ_T0073614.1 MGP_CASTEiJ_G0029018.1 mouse_genomes_project 5 114087177 114090283 - MGP_CASTEiJ_P0073614 Crybb3 protein_coding protein_coding MGP_CASTEiJ_T0073615.1 MGP_CASTEiJ_G0029018.1 mouse_genomes_project 5 114087243 114090284 - Crybb3 protein_coding processed_transcript MGP_CASTEiJ_T0073616.1 MGP_CASTEiJ_G0029018.1 mouse_genomes_project 5 114088465 114089764 - MGP_CASTEiJ_P0073616 Crybb3 protein_coding protein_coding MGP_CASTEiJ_T0014428.1 MGP_CASTEiJ_G0012591.1 mouse_genomes_project 5 29902339 29902737 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014346.1 MGP_CASTEiJ_G0012509.1 mouse_genomes_project 5 2571551 2572014 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014547.1 MGP_CASTEiJ_G0012710.1 mouse_genomes_project 5 88044706 88045085 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075846.1 MGP_CASTEiJ_G0029426.1 mouse_genomes_project 5 146910912 146929622 - MGP_CASTEiJ_P0075846 Spdye4a protein_coding protein_coding MGP_CASTEiJ_T0001717.1 MGP_CASTEiJ_G0001640.1 mouse_genomes_project 5 117738078 117739538 - TEC TEC MGP_CASTEiJ_T0004622.1 MGP_CASTEiJ_G0004002.1 mouse_genomes_project 5 101860487 101867297 + Gm20548 antisense antisense MGP_CASTEiJ_T0004623.1 MGP_CASTEiJ_G0004002.1 mouse_genomes_project 5 101860497 101867260 + Gm20548 antisense antisense MGP_CASTEiJ_T0004624.1 MGP_CASTEiJ_G0004002.1 mouse_genomes_project 5 101863167 101867352 + Gm20548 antisense antisense MGP_CASTEiJ_T0014354.1 MGP_CASTEiJ_G0012517.1 mouse_genomes_project 5 5051182 5051593 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076256.1 MGP_CASTEiJ_G0029507.1 mouse_genomes_project 5 155013171 155029150 - MGP_CASTEiJ_P0076256 Zar1l protein_coding protein_coding MGP_CASTEiJ_T0072263.1 MGP_CASTEiJ_G0028725.1 mouse_genomes_project 5 71592579 71616480 + MGP_CASTEiJ_P0072263 Nipal1 protein_coding protein_coding MGP_CASTEiJ_T0072264.1 MGP_CASTEiJ_G0028725.1 mouse_genomes_project 5 71592597 71613045 + MGP_CASTEiJ_P0072264 Nipal1 protein_coding protein_coding MGP_CASTEiJ_T0072265.1 MGP_CASTEiJ_G0028725.1 mouse_genomes_project 5 71592626 71604087 + Nipal1 protein_coding retained_intron MGP_CASTEiJ_T0008234.1 MGP_CASTEiJ_G0006694.1 mouse_genomes_project 5 151986104 151989785 + Gm43156 lincRNA lincRNA MGP_CASTEiJ_T0014543.1 MGP_CASTEiJ_G0012706.1 mouse_genomes_project 5 87517348 87517757 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072744.1 MGP_CASTEiJ_G0028832.1 mouse_genomes_project 5 90630652 90656121 + MGP_CASTEiJ_P0072744 Afm protein_coding protein_coding MGP_CASTEiJ_T0072745.1 MGP_CASTEiJ_G0028832.1 mouse_genomes_project 5 90630669 90651523 + MGP_CASTEiJ_P0072745 Afm protein_coding protein_coding MGP_CASTEiJ_T0074547.1 MGP_CASTEiJ_G0029182.1 mouse_genomes_project 5 125983762 125987282 - MGP_CASTEiJ_P0074547 Hcar2 protein_coding protein_coding MGP_CASTEiJ_T0014461.1 MGP_CASTEiJ_G0012624.1 mouse_genomes_project 5 46535387 46536752 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011265.1 MGP_CASTEiJ_G0009453.1 mouse_genomes_project 5 79162833 79163124 - Gm22553 misc_RNA misc_RNA MGP_CASTEiJ_T0001462.1 MGP_CASTEiJ_G0001388.1 mouse_genomes_project 5 37326535 37329948 - TEC TEC MGP_CASTEiJ_T0014558.1 MGP_CASTEiJ_G0012721.1 mouse_genomes_project 5 91937050 91937970 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001607.1 MGP_CASTEiJ_G0001531.1 mouse_genomes_project 5 66693676 66697006 - TEC TEC MGP_CASTEiJ_T0017437.1 MGP_CASTEiJ_G0014927.1 mouse_genomes_project 5 125046214 125070019 - Gm44574 processed_transcript processed_transcript MGP_CASTEiJ_T0102337.1 MGP_CASTEiJ_G0039062.1 mouse_genomes_project 5 272953 273130 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0004763.1 MGP_CASTEiJ_G0004103.1 mouse_genomes_project 5 155072626 155079124 - Gm42529 antisense antisense MGP_CASTEiJ_T0007844.1 MGP_CASTEiJ_G0006423.1 mouse_genomes_project 5 7301066 7395970 + Gm42831 lincRNA lincRNA MGP_CASTEiJ_T0007845.1 MGP_CASTEiJ_G0006423.1 mouse_genomes_project 5 7301116 7384958 + Gm42831 lincRNA lincRNA MGP_CASTEiJ_T0072739.1 MGP_CASTEiJ_G0028831.1 mouse_genomes_project 5 90598516 90619772 + MGP_CASTEiJ_P0072739 Afp protein_coding protein_coding MGP_CASTEiJ_T0072740.1 MGP_CASTEiJ_G0028831.1 mouse_genomes_project 5 90598518 90604964 + MGP_CASTEiJ_P0072740 Afp protein_coding protein_coding MGP_CASTEiJ_T0072741.1 MGP_CASTEiJ_G0028831.1 mouse_genomes_project 5 90600141 90605014 + Afp protein_coding retained_intron MGP_CASTEiJ_T0072742.1 MGP_CASTEiJ_G0028831.1 mouse_genomes_project 5 90612423 90615064 + Afp protein_coding retained_intron MGP_CASTEiJ_T0072743.1 MGP_CASTEiJ_G0028831.1 mouse_genomes_project 5 90618320 90619718 + Afp protein_coding retained_intron MGP_CASTEiJ_T0072980.1 MGP_CASTEiJ_G0028890.1 mouse_genomes_project 5 99838911 99863276 - MGP_CASTEiJ_P0072980 Hnrnpd protein_coding protein_coding MGP_CASTEiJ_T0072981.1 MGP_CASTEiJ_G0028890.1 mouse_genomes_project 5 99843452 99863275 - MGP_CASTEiJ_P0072981 Hnrnpd protein_coding protein_coding MGP_CASTEiJ_T0072982.1 MGP_CASTEiJ_G0028890.1 mouse_genomes_project 5 99843853 99863255 - MGP_CASTEiJ_P0072982 Hnrnpd protein_coding protein_coding MGP_CASTEiJ_T0072983.1 MGP_CASTEiJ_G0028890.1 mouse_genomes_project 5 99843857 99863273 - MGP_CASTEiJ_P0072983 Hnrnpd protein_coding protein_coding MGP_CASTEiJ_T0072984.1 MGP_CASTEiJ_G0028890.1 mouse_genomes_project 5 99843858 99859375 - MGP_CASTEiJ_P0072984 Hnrnpd protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072985.1 MGP_CASTEiJ_G0028890.1 mouse_genomes_project 5 99844005 99849012 - MGP_CASTEiJ_P0072985 Hnrnpd protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072986.1 MGP_CASTEiJ_G0028890.1 mouse_genomes_project 5 99844022 99847602 - MGP_CASTEiJ_P0072986 Hnrnpd protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072987.1 MGP_CASTEiJ_G0028890.1 mouse_genomes_project 5 99845137 99862962 - MGP_CASTEiJ_P0072987 Hnrnpd protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072988.1 MGP_CASTEiJ_G0028890.1 mouse_genomes_project 5 99847512 99862875 - MGP_CASTEiJ_P0072988 Hnrnpd protein_coding protein_coding MGP_CASTEiJ_T0072989.1 MGP_CASTEiJ_G0028890.1 mouse_genomes_project 5 99847594 99849225 - Hnrnpd protein_coding retained_intron MGP_CASTEiJ_T0075116.1 MGP_CASTEiJ_G0029280.1 mouse_genomes_project 5 138039391 138103953 + MGP_CASTEiJ_P0075116 Baz1b protein_coding protein_coding MGP_CASTEiJ_T0075117.1 MGP_CASTEiJ_G0029280.1 mouse_genomes_project 5 138051507 138054487 + Baz1b protein_coding retained_intron MGP_CASTEiJ_T0075118.1 MGP_CASTEiJ_G0029280.1 mouse_genomes_project 5 138061834 138067876 + Baz1b protein_coding retained_intron MGP_CASTEiJ_T0075119.1 MGP_CASTEiJ_G0029280.1 mouse_genomes_project 5 138064443 138074303 + Baz1b protein_coding retained_intron MGP_CASTEiJ_T0075120.1 MGP_CASTEiJ_G0029280.1 mouse_genomes_project 5 138099581 138102006 + Baz1b protein_coding retained_intron MGP_CASTEiJ_T0007932.1 MGP_CASTEiJ_G0006482.1 mouse_genomes_project 5 51444120 51456682 - Gm42745 lincRNA lincRNA MGP_CASTEiJ_T0098954.1 MGP_CASTEiJ_G0035878.1 mouse_genomes_project 5 2152831 2158686 - Gm10484 sense_intronic sense_intronic MGP_CASTEiJ_T0014473.1 MGP_CASTEiJ_G0012636.1 mouse_genomes_project 5 53779680 53779988 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073818.1 MGP_CASTEiJ_G0029057.1 mouse_genomes_project 5 116129187 116138047 + MGP_CASTEiJ_P0073818 2210016L21Rik protein_coding protein_coding MGP_CASTEiJ_T0073819.1 MGP_CASTEiJ_G0029057.1 mouse_genomes_project 5 116129232 116135194 + 2210016L21Rik protein_coding retained_intron MGP_CASTEiJ_T0073820.1 MGP_CASTEiJ_G0029057.1 mouse_genomes_project 5 116129238 116135160 + MGP_CASTEiJ_P0073820 2210016L21Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073821.1 MGP_CASTEiJ_G0029057.1 mouse_genomes_project 5 116129259 116134531 + 2210016L21Rik protein_coding retained_intron MGP_CASTEiJ_T0073822.1 MGP_CASTEiJ_G0029057.1 mouse_genomes_project 5 116134116 116136048 + MGP_CASTEiJ_P0073822 2210016L21Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001487.1 MGP_CASTEiJ_G0001413.1 mouse_genomes_project 5 43343316 43345336 + TEC TEC MGP_CASTEiJ_T0001502.1 MGP_CASTEiJ_G0001428.1 mouse_genomes_project 5 46674570 46676822 - TEC TEC MGP_CASTEiJ_T0075928.1 MGP_CASTEiJ_G0029445.1 mouse_genomes_project 5 147697724 147729878 - MGP_CASTEiJ_P0075928 Ccz1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0075929.1 MGP_CASTEiJ_G0029445.1 mouse_genomes_project 5 147697725 147729875 - MGP_CASTEiJ_P0075929 Ccz1 protein_coding protein_coding MGP_CASTEiJ_T0075930.1 MGP_CASTEiJ_G0029445.1 mouse_genomes_project 5 147701261 147702382 - Ccz1 protein_coding processed_transcript MGP_CASTEiJ_T0075931.1 MGP_CASTEiJ_G0029445.1 mouse_genomes_project 5 147702275 147713987 - Ccz1 protein_coding retained_intron MGP_CASTEiJ_T0075932.1 MGP_CASTEiJ_G0029445.1 mouse_genomes_project 5 147721977 147729899 - Ccz1 protein_coding retained_intron MGP_CASTEiJ_T0075933.1 MGP_CASTEiJ_G0029445.1 mouse_genomes_project 5 147725079 147729899 - Ccz1 protein_coding retained_intron MGP_CASTEiJ_T0001645.1 MGP_CASTEiJ_G0001568.1 mouse_genomes_project 5 81118966 81119914 + TEC TEC MGP_CASTEiJ_T0001592.1 MGP_CASTEiJ_G0001516.1 mouse_genomes_project 5 65117725 65119094 - TEC TEC MGP_CASTEiJ_T0004616.1 MGP_CASTEiJ_G0003997.1 mouse_genomes_project 5 99555929 99557968 + 4930522N08Rik antisense antisense MGP_CASTEiJ_T0098767.1 MGP_CASTEiJ_G0035698.1 mouse_genomes_project 5 125627074 125627211 + Gm24682 scaRNA scaRNA MGP_CASTEiJ_T0071328.1 MGP_CASTEiJ_G0028571.1 mouse_genomes_project 5 31810806 31827738 + MGP_CASTEiJ_P0071328 Rnf4 protein_coding protein_coding MGP_CASTEiJ_T0071329.1 MGP_CASTEiJ_G0028571.1 mouse_genomes_project 5 31810845 31824828 + Rnf4 protein_coding retained_intron MGP_CASTEiJ_T0071330.1 MGP_CASTEiJ_G0028571.1 mouse_genomes_project 5 31810897 31827735 + MGP_CASTEiJ_P0071330 Rnf4 protein_coding protein_coding MGP_CASTEiJ_T0071331.1 MGP_CASTEiJ_G0028571.1 mouse_genomes_project 5 31810907 31824331 + Rnf4 protein_coding processed_transcript MGP_CASTEiJ_T0071332.1 MGP_CASTEiJ_G0028571.1 mouse_genomes_project 5 31810934 31821439 + Rnf4 protein_coding retained_intron MGP_CASTEiJ_T0071333.1 MGP_CASTEiJ_G0028571.1 mouse_genomes_project 5 31810936 31817149 + Rnf4 protein_coding processed_transcript MGP_CASTEiJ_T0071334.1 MGP_CASTEiJ_G0028571.1 mouse_genomes_project 5 31810941 31821731 + Rnf4 protein_coding retained_intron MGP_CASTEiJ_T0071335.1 MGP_CASTEiJ_G0028571.1 mouse_genomes_project 5 31810963 31824166 + Rnf4 protein_coding retained_intron MGP_CASTEiJ_T0071336.1 MGP_CASTEiJ_G0028571.1 mouse_genomes_project 5 31811202 31824328 + MGP_CASTEiJ_P0071336 Rnf4 protein_coding protein_coding MGP_CASTEiJ_T0071337.1 MGP_CASTEiJ_G0028571.1 mouse_genomes_project 5 31811449 31827723 + MGP_CASTEiJ_P0071337 Rnf4 protein_coding protein_coding MGP_CASTEiJ_T0071338.1 MGP_CASTEiJ_G0028571.1 mouse_genomes_project 5 31811835 31817185 + Rnf4 protein_coding processed_transcript MGP_CASTEiJ_T0071339.1 MGP_CASTEiJ_G0028571.1 mouse_genomes_project 5 31825414 31829940 + Rnf4 protein_coding retained_intron MGP_CASTEiJ_T0098622.1 MGP_CASTEiJ_G0035553.1 mouse_genomes_project 5 137214418 137214532 + n-R5s178 rRNA rRNA MGP_CASTEiJ_T0075398.1 MGP_CASTEiJ_G0029335.1 mouse_genomes_project 5 140593204 140602368 + MGP_CASTEiJ_P0075398 Actl6b protein_coding protein_coding MGP_CASTEiJ_T0075399.1 MGP_CASTEiJ_G0029335.1 mouse_genomes_project 5 140593225 140594034 + Actl6b protein_coding retained_intron MGP_CASTEiJ_T0075400.1 MGP_CASTEiJ_G0029335.1 mouse_genomes_project 5 140593225 140606303 + MGP_CASTEiJ_P0075400 Actl6b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075401.1 MGP_CASTEiJ_G0029335.1 mouse_genomes_project 5 140593226 140605084 + MGP_CASTEiJ_P0075401 Actl6b protein_coding protein_coding MGP_CASTEiJ_T0075402.1 MGP_CASTEiJ_G0029335.1 mouse_genomes_project 5 140593242 140594720 + MGP_CASTEiJ_P0075402 Actl6b protein_coding protein_coding MGP_CASTEiJ_T0075403.1 MGP_CASTEiJ_G0029335.1 mouse_genomes_project 5 140593244 140596332 + Actl6b protein_coding retained_intron MGP_CASTEiJ_T0075404.1 MGP_CASTEiJ_G0029335.1 mouse_genomes_project 5 140593244 140611239 + MGP_CASTEiJ_P0075404 Actl6b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075405.1 MGP_CASTEiJ_G0029335.1 mouse_genomes_project 5 140593322 140611068 + MGP_CASTEiJ_P0075405 Actl6b protein_coding protein_coding MGP_CASTEiJ_T0004653.1 MGP_CASTEiJ_G0004026.1 mouse_genomes_project 5 116156361 116158937 + Hnf1aos2 antisense antisense MGP_CASTEiJ_T0007961.1 MGP_CASTEiJ_G0006504.1 mouse_genomes_project 5 72971876 72973876 + C78283 lincRNA lincRNA MGP_CASTEiJ_T0071763.1 MGP_CASTEiJ_G0028640.1 mouse_genomes_project 5 43260608 43271168 + MGP_CASTEiJ_P0071763 Clrn2 protein_coding protein_coding MGP_CASTEiJ_T0014596.1 MGP_CASTEiJ_G0012759.1 mouse_genomes_project 5 108478596 108478938 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001422.1 MGP_CASTEiJ_G0001350.1 mouse_genomes_project 5 22563695 22567714 + TEC TEC MGP_CASTEiJ_T0075064.1 MGP_CASTEiJ_G0029271.1 mouse_genomes_project 5 137837989 137839248 + MGP_CASTEiJ_P0075064 Cldn3 protein_coding protein_coding MGP_CASTEiJ_T0101139.1 MGP_CASTEiJ_G0038052.1 mouse_genomes_project 5 108545888 108546020 + Gm26387 snoRNA snoRNA MGP_CASTEiJ_T0014509.1 MGP_CASTEiJ_G0012672.1 mouse_genomes_project 5 68336245 68336837 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099868.1 MGP_CASTEiJ_G0036781.1 mouse_genomes_project 5 26696277 26696383 - Gm24538 snRNA snRNA MGP_CASTEiJ_T0073041.1 MGP_CASTEiJ_G0028899.1 mouse_genomes_project 5 100601349 100620857 - MGP_CASTEiJ_P0073041 Coq2 protein_coding protein_coding MGP_CASTEiJ_T0073042.1 MGP_CASTEiJ_G0028899.1 mouse_genomes_project 5 100601881 100620729 - MGP_CASTEiJ_P0073042 Coq2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073043.1 MGP_CASTEiJ_G0028899.1 mouse_genomes_project 5 100604573 100620822 - MGP_CASTEiJ_P0073043 Coq2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073044.1 MGP_CASTEiJ_G0028899.1 mouse_genomes_project 5 100606801 100610988 - MGP_CASTEiJ_P0073044 Coq2 protein_coding protein_coding MGP_CASTEiJ_T0073045.1 MGP_CASTEiJ_G0028899.1 mouse_genomes_project 5 100608479 100621713 - MGP_CASTEiJ_P0073045 Coq2 protein_coding protein_coding MGP_CASTEiJ_T0014370.1 MGP_CASTEiJ_G0012533.1 mouse_genomes_project 5 14372533 14373595 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074615.1 MGP_CASTEiJ_G0029194.1 mouse_genomes_project 5 126481798 126493495 + MGP_CASTEiJ_P0074615 2810006K23Rik protein_coding protein_coding MGP_CASTEiJ_T0074616.1 MGP_CASTEiJ_G0029194.1 mouse_genomes_project 5 126481807 126495242 + MGP_CASTEiJ_P0074616 2810006K23Rik protein_coding protein_coding MGP_CASTEiJ_T0072642.1 MGP_CASTEiJ_G0028800.1 mouse_genomes_project 5 87713865 87733582 + MGP_CASTEiJ_P0072642 Csn1s2a protein_coding protein_coding MGP_CASTEiJ_T0072643.1 MGP_CASTEiJ_G0028800.1 mouse_genomes_project 5 87713865 87733582 + MGP_CASTEiJ_P0072643 Csn1s2a protein_coding protein_coding MGP_CASTEiJ_T0072644.1 MGP_CASTEiJ_G0028800.1 mouse_genomes_project 5 87713865 87733483 + MGP_CASTEiJ_P0072644 Csn1s2a protein_coding protein_coding MGP_CASTEiJ_T0072645.1 MGP_CASTEiJ_G0028800.1 mouse_genomes_project 5 87713879 87733483 + MGP_CASTEiJ_P0072645 Csn1s2a protein_coding protein_coding MGP_CASTEiJ_T0072646.1 MGP_CASTEiJ_G0028800.1 mouse_genomes_project 5 87713880 87720051 + Csn1s2a protein_coding retained_intron MGP_CASTEiJ_T0072647.1 MGP_CASTEiJ_G0028800.1 mouse_genomes_project 5 87715082 87718275 + Csn1s2a protein_coding retained_intron MGP_CASTEiJ_T0072648.1 MGP_CASTEiJ_G0028800.1 mouse_genomes_project 5 87716747 87719866 + Csn1s2a protein_coding retained_intron MGP_CASTEiJ_T0072649.1 MGP_CASTEiJ_G0028800.1 mouse_genomes_project 5 87719075 87721257 + Csn1s2a protein_coding retained_intron MGP_CASTEiJ_T0072650.1 MGP_CASTEiJ_G0028800.1 mouse_genomes_project 5 87721227 87733561 + Csn1s2a protein_coding retained_intron MGP_CASTEiJ_T0072651.1 MGP_CASTEiJ_G0028800.1 mouse_genomes_project 5 87729466 87731901 + Csn1s2a protein_coding retained_intron MGP_CASTEiJ_T0075478.1 MGP_CASTEiJ_G0029348.1 mouse_genomes_project 5 140846976 140851727 - MGP_CASTEiJ_P0075478 Mepce protein_coding protein_coding MGP_CASTEiJ_T0075479.1 MGP_CASTEiJ_G0029348.1 mouse_genomes_project 5 140847496 140851779 - MGP_CASTEiJ_P0075479 Mepce protein_coding protein_coding MGP_CASTEiJ_T0075480.1 MGP_CASTEiJ_G0029348.1 mouse_genomes_project 5 140847550 140848419 - Mepce protein_coding retained_intron MGP_CASTEiJ_T0075481.1 MGP_CASTEiJ_G0029348.1 mouse_genomes_project 5 140848198 140852720 - MGP_CASTEiJ_P0075481 Mepce protein_coding protein_coding MGP_CASTEiJ_T0075482.1 MGP_CASTEiJ_G0029348.1 mouse_genomes_project 5 140849952 140851755 - Mepce protein_coding processed_transcript MGP_CASTEiJ_T0101143.1 MGP_CASTEiJ_G0038056.1 mouse_genomes_project 5 123074536 123074670 + Gm26205 snoRNA snoRNA MGP_CASTEiJ_T0073645.1 MGP_CASTEiJ_G0029026.1 mouse_genomes_project 5 114821295 114851643 - MGP_CASTEiJ_P0073645 Sart3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073646.1 MGP_CASTEiJ_G0029026.1 mouse_genomes_project 5 114822573 114852489 - MGP_CASTEiJ_P0073646 Sart3 protein_coding protein_coding MGP_CASTEiJ_T0073647.1 MGP_CASTEiJ_G0029026.1 mouse_genomes_project 5 114822575 114851619 - MGP_CASTEiJ_P0073647 Sart3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073648.1 MGP_CASTEiJ_G0029026.1 mouse_genomes_project 5 114824844 114825762 - Sart3 protein_coding retained_intron MGP_CASTEiJ_T0073649.1 MGP_CASTEiJ_G0029026.1 mouse_genomes_project 5 114825936 114835650 - Sart3 protein_coding processed_transcript MGP_CASTEiJ_T0073650.1 MGP_CASTEiJ_G0029026.1 mouse_genomes_project 5 114834387 114834964 - Sart3 protein_coding processed_transcript MGP_CASTEiJ_T0073651.1 MGP_CASTEiJ_G0029026.1 mouse_genomes_project 5 114835186 114838587 - Sart3 protein_coding retained_intron MGP_CASTEiJ_T0073652.1 MGP_CASTEiJ_G0029026.1 mouse_genomes_project 5 114835614 114841683 - Sart3 protein_coding processed_transcript MGP_CASTEiJ_T0010421.1 MGP_CASTEiJ_G0008609.1 mouse_genomes_project 5 137381939 137381978 + Mir7228 miRNA miRNA MGP_CASTEiJ_T0101614.1 MGP_CASTEiJ_G0038473.1 mouse_genomes_project 5 54627253 54702553 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0014572.1 MGP_CASTEiJ_G0012735.1 mouse_genomes_project 5 100441652 100442077 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001384.1 MGP_CASTEiJ_G0001313.1 mouse_genomes_project 5 4275919 4277464 - TEC TEC MGP_CASTEiJ_T0001572.1 MGP_CASTEiJ_G0001496.1 mouse_genomes_project 5 64064887 64067287 - TEC TEC MGP_CASTEiJ_T0074038.1 MGP_CASTEiJ_G0029099.1 mouse_genomes_project 5 119695176 119750801 - MGP_CASTEiJ_P0074038 Rnft2 protein_coding protein_coding MGP_CASTEiJ_T0074039.1 MGP_CASTEiJ_G0029099.1 mouse_genomes_project 5 119695182 119751057 - MGP_CASTEiJ_P0074039 Rnft2 protein_coding protein_coding MGP_CASTEiJ_T0074040.1 MGP_CASTEiJ_G0029099.1 mouse_genomes_project 5 119698010 119735163 - Rnft2 protein_coding retained_intron MGP_CASTEiJ_T0074041.1 MGP_CASTEiJ_G0029099.1 mouse_genomes_project 5 119698492 119705649 - MGP_CASTEiJ_P0074041 Rnft2 protein_coding protein_coding MGP_CASTEiJ_T0074042.1 MGP_CASTEiJ_G0029099.1 mouse_genomes_project 5 119740067 119750935 - MGP_CASTEiJ_P0074042 Rnft2 protein_coding protein_coding MGP_CASTEiJ_T0074043.1 MGP_CASTEiJ_G0029099.1 mouse_genomes_project 5 119742820 119748852 - Rnft2 protein_coding retained_intron MGP_CASTEiJ_T0074044.1 MGP_CASTEiJ_G0029099.1 mouse_genomes_project 5 119743402 119750933 - MGP_CASTEiJ_P0074044 Rnft2 protein_coding protein_coding MGP_CASTEiJ_T0074657.1 MGP_CASTEiJ_G0029201.1 mouse_genomes_project 5 126710811 126722380 + MGP_CASTEiJ_P0074657 Tmed2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074658.1 MGP_CASTEiJ_G0029201.1 mouse_genomes_project 5 126711185 126722571 + MGP_CASTEiJ_P0074658 Tmed2 protein_coding protein_coding MGP_CASTEiJ_T0074659.1 MGP_CASTEiJ_G0029201.1 mouse_genomes_project 5 126711192 126711612 + Tmed2 protein_coding retained_intron MGP_CASTEiJ_T0001529.1 MGP_CASTEiJ_G0001454.1 mouse_genomes_project 5 49461680 49465404 + TEC TEC MGP_CASTEiJ_T0004531.1 MGP_CASTEiJ_G0003932.1 mouse_genomes_project 5 30089516 30090858 - Gm11399 antisense antisense MGP_CASTEiJ_T0001633.1 MGP_CASTEiJ_G0001556.1 mouse_genomes_project 5 73230812 73234676 - TEC TEC MGP_CASTEiJ_T0004504.1 MGP_CASTEiJ_G0003911.1 mouse_genomes_project 5 11924517 11956179 - Gm26954 antisense antisense MGP_CASTEiJ_T0004505.1 MGP_CASTEiJ_G0003911.1 mouse_genomes_project 5 11942039 11956164 - Gm26954 antisense antisense MGP_CASTEiJ_T0008273.1 MGP_CASTEiJ_G0006721.1 mouse_genomes_project 5 155407104 155432137 - Gm43298 lincRNA lincRNA MGP_CASTEiJ_T0007881.1 MGP_CASTEiJ_G0006446.1 mouse_genomes_project 5 28849337 28851140 - AI839979 lincRNA lincRNA MGP_CASTEiJ_T0007882.1 MGP_CASTEiJ_G0006446.1 mouse_genomes_project 5 28849846 28851134 - AI839979 lincRNA lincRNA MGP_CASTEiJ_T0008265.1 MGP_CASTEiJ_G0006716.1 mouse_genomes_project 5 155005832 155008211 - Gm5 lincRNA lincRNA MGP_CASTEiJ_T0008266.1 MGP_CASTEiJ_G0006716.1 mouse_genomes_project 5 155005900 155008382 - Gm5 lincRNA lincRNA MGP_CASTEiJ_T0001512.1 MGP_CASTEiJ_G0001437.1 mouse_genomes_project 5 46900704 46901999 - TEC TEC MGP_CASTEiJ_T0001727.1 MGP_CASTEiJ_G0001650.1 mouse_genomes_project 5 120170028 120171048 + TEC TEC MGP_CASTEiJ_T0007923.1 MGP_CASTEiJ_G0006473.1 mouse_genomes_project 5 43010577 43069310 - Gm43303 lincRNA lincRNA MGP_CASTEiJ_T0014633.1 MGP_CASTEiJ_G0012796.1 mouse_genomes_project 5 124818809 124833844 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001450.1 MGP_CASTEiJ_G0001376.1 mouse_genomes_project 5 31948126 31951649 + TEC TEC MGP_CASTEiJ_T0004666.1 MGP_CASTEiJ_G0004034.1 mouse_genomes_project 5 119422632 119427986 - Gm26995 antisense antisense MGP_CASTEiJ_T0014366.1 MGP_CASTEiJ_G0012529.1 mouse_genomes_project 5 12646456 12646865 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014576.1 MGP_CASTEiJ_G0012739.1 mouse_genomes_project 5 101493082 101497707 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073544.1 MGP_CASTEiJ_G0029003.1 mouse_genomes_project 5 112293549 112294261 + Mn1 protein_coding processed_transcript MGP_CASTEiJ_T0073545.1 MGP_CASTEiJ_G0029003.1 mouse_genomes_project 5 112293629 112338996 + MGP_CASTEiJ_P0073545 Mn1 protein_coding protein_coding MGP_CASTEiJ_T0102342.1 MGP_CASTEiJ_G0039067.1 mouse_genomes_project 5 56659713 56660686 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008163.1 MGP_CASTEiJ_G0006646.1 mouse_genomes_project 5 128157128 128184993 + 1700048F04Rik lincRNA lincRNA MGP_CASTEiJ_T0007875.1 MGP_CASTEiJ_G0006441.1 mouse_genomes_project 5 25664270 25679720 + Gm26894 lincRNA lincRNA MGP_CASTEiJ_T0102359.1 MGP_CASTEiJ_G0039084.1 mouse_genomes_project 5 128068989 128069642 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008022.1 MGP_CASTEiJ_G0006555.1 mouse_genomes_project 5 100108058 100115360 + 2310034O05Rik lincRNA lincRNA MGP_CASTEiJ_T0008023.1 MGP_CASTEiJ_G0006555.1 mouse_genomes_project 5 100108074 100114055 + 2310034O05Rik lincRNA lincRNA MGP_CASTEiJ_T0014603.1 MGP_CASTEiJ_G0012766.1 mouse_genomes_project 5 109644698 109646096 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017421.1 MGP_CASTEiJ_G0014921.1 mouse_genomes_project 5 73141687 73142947 + Dancr processed_transcript lincRNA MGP_CASTEiJ_T0017422.1 MGP_CASTEiJ_G0014921.1 mouse_genomes_project 5 73141693 73142946 + Dancr processed_transcript retained_intron MGP_CASTEiJ_T0008128.1 MGP_CASTEiJ_G0006622.1 mouse_genomes_project 5 120508179 120517333 + Gm43342 lincRNA lincRNA MGP_CASTEiJ_T0010428.1 MGP_CASTEiJ_G0008616.1 mouse_genomes_project 5 140304191 140304288 + Mir8116 miRNA miRNA MGP_CASTEiJ_T0014422.1 MGP_CASTEiJ_G0012585.1 mouse_genomes_project 5 27508162 27508529 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014351.1 MGP_CASTEiJ_G0012514.1 mouse_genomes_project 5 4423368 4424369 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098971.1 MGP_CASTEiJ_G0035895.1 mouse_genomes_project 5 117961045 117964038 - sense_intronic sense_intronic MGP_CASTEiJ_T0076027.1 MGP_CASTEiJ_G0029464.1 mouse_genomes_project 5 149029629 149036319 - MGP_CASTEiJ_P0076027 Zkscan14 protein_coding protein_coding MGP_CASTEiJ_T0076028.1 MGP_CASTEiJ_G0029464.1 mouse_genomes_project 5 149030306 149036308 - MGP_CASTEiJ_P0076028 Zkscan14 protein_coding protein_coding MGP_CASTEiJ_T0076029.1 MGP_CASTEiJ_G0029464.1 mouse_genomes_project 5 149034088 149036319 - MGP_CASTEiJ_P0076029 Zkscan14 protein_coding protein_coding MGP_CASTEiJ_T0001697.1 MGP_CASTEiJ_G0001620.1 mouse_genomes_project 5 112209323 112210129 - TEC TEC MGP_CASTEiJ_T0014372.1 MGP_CASTEiJ_G0012535.1 mouse_genomes_project 5 16146875 16147116 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001666.1 MGP_CASTEiJ_G0001589.1 mouse_genomes_project 5 98143158 98146586 + TEC TEC MGP_CASTEiJ_T0075802.1 MGP_CASTEiJ_G0029418.1 mouse_genomes_project 5 146320081 146341953 + MGP_CASTEiJ_P0075802 Slc29a4 protein_coding protein_coding MGP_CASTEiJ_T0075803.1 MGP_CASTEiJ_G0029418.1 mouse_genomes_project 5 146329297 146352820 + MGP_CASTEiJ_P0075803 Slc29a4 protein_coding protein_coding MGP_CASTEiJ_T0074108.1 MGP_CASTEiJ_G0029115.1 mouse_genomes_project 5 122398519 122404477 + MGP_CASTEiJ_P0074108 Rasal1 protein_coding protein_coding MGP_CASTEiJ_T0074109.1 MGP_CASTEiJ_G0029115.1 mouse_genomes_project 5 122398529 122433884 + MGP_CASTEiJ_P0074109 Rasal1 protein_coding protein_coding MGP_CASTEiJ_T0074110.1 MGP_CASTEiJ_G0029115.1 mouse_genomes_project 5 122398895 122433884 + MGP_CASTEiJ_P0074110 Rasal1 protein_coding protein_coding MGP_CASTEiJ_T0074111.1 MGP_CASTEiJ_G0029115.1 mouse_genomes_project 5 122403086 122409274 + Rasal1 protein_coding processed_transcript MGP_CASTEiJ_T0074112.1 MGP_CASTEiJ_G0029115.1 mouse_genomes_project 5 122432877 122433593 + Rasal1 protein_coding retained_intron MGP_CASTEiJ_T0014528.1 MGP_CASTEiJ_G0012691.1 mouse_genomes_project 5 76625929 76626212 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008089.1 MGP_CASTEiJ_G0006597.1 mouse_genomes_project 5 113161281 113177374 - Miat lincRNA lincRNA MGP_CASTEiJ_T0008090.1 MGP_CASTEiJ_G0006597.1 mouse_genomes_project 5 113161283 113176926 - Miat lincRNA lincRNA MGP_CASTEiJ_T0008092.1 MGP_CASTEiJ_G0006597.1 mouse_genomes_project 5 113169443 113176611 - Miat lincRNA lincRNA MGP_CASTEiJ_T0008093.1 MGP_CASTEiJ_G0006597.1 mouse_genomes_project 5 113169734 113176907 - Miat lincRNA lincRNA MGP_CASTEiJ_T0008094.1 MGP_CASTEiJ_G0006597.1 mouse_genomes_project 5 113169932 113176642 - Miat lincRNA lincRNA MGP_CASTEiJ_T0008095.1 MGP_CASTEiJ_G0006597.1 mouse_genomes_project 5 113176072 113176608 - Miat lincRNA lincRNA MGP_CASTEiJ_T0004538.1 MGP_CASTEiJ_G0003939.1 mouse_genomes_project 5 33132718 33140257 - 4931431C16Rik antisense antisense MGP_CASTEiJ_T0101119.1 MGP_CASTEiJ_G0038032.1 mouse_genomes_project 5 62555584 62555716 - Gm25608 snoRNA snoRNA MGP_CASTEiJ_T0010369.1 MGP_CASTEiJ_G0008557.1 mouse_genomes_project 5 26543014 26543081 - Gm23801 miRNA miRNA MGP_CASTEiJ_T0075717.1 MGP_CASTEiJ_G0029398.1 mouse_genomes_project 5 143754895 143770742 + MGP_CASTEiJ_P0075717 Nudt1 protein_coding protein_coding MGP_CASTEiJ_T0075719.1 MGP_CASTEiJ_G0029398.1 mouse_genomes_project 5 143764737 143771247 + MGP_CASTEiJ_P0075719 Nudt1 protein_coding protein_coding MGP_CASTEiJ_T0075720.1 MGP_CASTEiJ_G0029398.1 mouse_genomes_project 5 143764786 143771247 + MGP_CASTEiJ_P0075720 Nudt1 protein_coding protein_coding MGP_CASTEiJ_T0075721.1 MGP_CASTEiJ_G0029398.1 mouse_genomes_project 5 143764831 143771051 + MGP_CASTEiJ_P0075721 Nudt1 protein_coding protein_coding MGP_CASTEiJ_T0075722.1 MGP_CASTEiJ_G0029398.1 mouse_genomes_project 5 143765272 143770918 + MGP_CASTEiJ_P0075722 Nudt1 protein_coding protein_coding MGP_CASTEiJ_T0075723.1 MGP_CASTEiJ_G0029398.1 mouse_genomes_project 5 143765301 143768855 + MGP_CASTEiJ_P0075723 Nudt1 protein_coding protein_coding MGP_CASTEiJ_T0075724.1 MGP_CASTEiJ_G0029398.1 mouse_genomes_project 5 143767701 143768971 + Nudt1 protein_coding processed_transcript MGP_CASTEiJ_T0010398.1 MGP_CASTEiJ_G0008586.1 mouse_genomes_project 5 98285803 98285964 - Mir703 miRNA miRNA MGP_CASTEiJ_T0014598.1 MGP_CASTEiJ_G0012761.1 mouse_genomes_project 5 108700657 108701079 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073462.1 MGP_CASTEiJ_G0028990.1 mouse_genomes_project 5 111159787 111162930 - MGP_CASTEiJ_P0073462 P2rx2 protein_coding protein_coding MGP_CASTEiJ_T0073463.1 MGP_CASTEiJ_G0028990.1 mouse_genomes_project 5 111159787 111163187 - MGP_CASTEiJ_P0073463 P2rx2 protein_coding protein_coding MGP_CASTEiJ_T0073464.1 MGP_CASTEiJ_G0028990.1 mouse_genomes_project 5 111159787 111162930 - MGP_CASTEiJ_P0073464 P2rx2 protein_coding protein_coding MGP_CASTEiJ_T0073465.1 MGP_CASTEiJ_G0028990.1 mouse_genomes_project 5 111159788 111162951 - MGP_CASTEiJ_P0073465 P2rx2 protein_coding protein_coding MGP_CASTEiJ_T0073466.1 MGP_CASTEiJ_G0028990.1 mouse_genomes_project 5 111159945 111163124 - P2rx2 protein_coding retained_intron MGP_CASTEiJ_T0073467.1 MGP_CASTEiJ_G0028990.1 mouse_genomes_project 5 111159945 111163124 - MGP_CASTEiJ_P0073467 P2rx2 protein_coding protein_coding MGP_CASTEiJ_T0072998.1 MGP_CASTEiJ_G0028893.1 mouse_genomes_project 5 99928956 99957761 + MGP_CASTEiJ_P0072998 Enoph1 protein_coding protein_coding MGP_CASTEiJ_T0072999.1 MGP_CASTEiJ_G0028893.1 mouse_genomes_project 5 99929015 99957761 + MGP_CASTEiJ_P0072999 Enoph1 protein_coding protein_coding MGP_CASTEiJ_T0073000.1 MGP_CASTEiJ_G0028893.1 mouse_genomes_project 5 99929039 99950280 + Enoph1 protein_coding retained_intron MGP_CASTEiJ_T0073001.1 MGP_CASTEiJ_G0028893.1 mouse_genomes_project 5 99929121 99956924 + MGP_CASTEiJ_P0073001 Enoph1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073002.1 MGP_CASTEiJ_G0028893.1 mouse_genomes_project 5 99950895 99953088 + Enoph1 protein_coding processed_transcript MGP_CASTEiJ_T0008087.1 MGP_CASTEiJ_G0006596.1 mouse_genomes_project 5 113152834 113158071 + 1700028D13Rik lincRNA lincRNA MGP_CASTEiJ_T0008088.1 MGP_CASTEiJ_G0006596.1 mouse_genomes_project 5 113152877 113158073 + 1700028D13Rik lincRNA lincRNA MGP_CASTEiJ_T0008015.1 MGP_CASTEiJ_G0006549.1 mouse_genomes_project 5 99118940 99124174 + Gm43252 lincRNA lincRNA MGP_CASTEiJ_T0011262.1 MGP_CASTEiJ_G0009450.1 mouse_genomes_project 5 29191191 29191493 + Gm24436 misc_RNA misc_RNA MGP_CASTEiJ_T0008261.1 MGP_CASTEiJ_G0006712.1 mouse_genomes_project 5 154075418 154082818 + Gm43153 lincRNA lincRNA MGP_CASTEiJ_T0014464.1 MGP_CASTEiJ_G0012627.1 mouse_genomes_project 5 48428941 48429683 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072764.1 MGP_CASTEiJ_G0028839.1 mouse_genomes_project 5 90915290 90923650 + MGP_CASTEiJ_P0072764 Cxcl15 protein_coding protein_coding MGP_CASTEiJ_T0075500.1 MGP_CASTEiJ_G0029355.1 mouse_genomes_project 5 141187575 141206944 + MGP_CASTEiJ_P0075500 Zscan21 protein_coding protein_coding MGP_CASTEiJ_T0075501.1 MGP_CASTEiJ_G0029355.1 mouse_genomes_project 5 141187588 141206996 + MGP_CASTEiJ_P0075501 Zscan21 protein_coding protein_coding MGP_CASTEiJ_T0075502.1 MGP_CASTEiJ_G0029355.1 mouse_genomes_project 5 141187609 141206996 + MGP_CASTEiJ_P0075502 Zscan21 protein_coding protein_coding MGP_CASTEiJ_T0075503.1 MGP_CASTEiJ_G0029355.1 mouse_genomes_project 5 141187609 141206945 + MGP_CASTEiJ_P0075503 Zscan21 protein_coding protein_coding MGP_CASTEiJ_T0075504.1 MGP_CASTEiJ_G0029355.1 mouse_genomes_project 5 141187652 141205978 + MGP_CASTEiJ_P0075504 Zscan21 protein_coding protein_coding MGP_CASTEiJ_T0075505.1 MGP_CASTEiJ_G0029355.1 mouse_genomes_project 5 141187654 141198706 + MGP_CASTEiJ_P0075505 Zscan21 protein_coding protein_coding MGP_CASTEiJ_T0075506.1 MGP_CASTEiJ_G0029355.1 mouse_genomes_project 5 141187713 141206947 + MGP_CASTEiJ_P0075506 Zscan21 protein_coding protein_coding MGP_CASTEiJ_T0073856.1 MGP_CASTEiJ_G0029066.1 mouse_genomes_project 5 116464948 116494421 - MGP_CASTEiJ_P0073856 Rnf10 protein_coding protein_coding MGP_CASTEiJ_T0073857.1 MGP_CASTEiJ_G0029066.1 mouse_genomes_project 5 116465306 116494415 - MGP_CASTEiJ_P0073857 Rnf10 protein_coding protein_coding MGP_CASTEiJ_T0073858.1 MGP_CASTEiJ_G0029066.1 mouse_genomes_project 5 116465306 116494418 - MGP_CASTEiJ_P0073858 Rnf10 protein_coding protein_coding MGP_CASTEiJ_T0073859.1 MGP_CASTEiJ_G0029066.1 mouse_genomes_project 5 116465311 116466226 - Rnf10 protein_coding retained_intron MGP_CASTEiJ_T0073860.1 MGP_CASTEiJ_G0029066.1 mouse_genomes_project 5 116465315 116493830 - MGP_CASTEiJ_P0073860 Rnf10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073861.1 MGP_CASTEiJ_G0029066.1 mouse_genomes_project 5 116467244 116469627 - Rnf10 protein_coding retained_intron MGP_CASTEiJ_T0073862.1 MGP_CASTEiJ_G0029066.1 mouse_genomes_project 5 116472232 116473027 - Rnf10 protein_coding processed_transcript MGP_CASTEiJ_T0073863.1 MGP_CASTEiJ_G0029066.1 mouse_genomes_project 5 116474832 116476067 - Rnf10 protein_coding retained_intron MGP_CASTEiJ_T0073864.1 MGP_CASTEiJ_G0029066.1 mouse_genomes_project 5 116474853 116480666 - Rnf10 protein_coding processed_transcript MGP_CASTEiJ_T0073865.1 MGP_CASTEiJ_G0029066.1 mouse_genomes_project 5 116476660 116478332 - Rnf10 protein_coding retained_intron MGP_CASTEiJ_T0073866.1 MGP_CASTEiJ_G0029066.1 mouse_genomes_project 5 116492166 116494418 - Rnf10 protein_coding retained_intron MGP_CASTEiJ_T0014515.1 MGP_CASTEiJ_G0012678.1 mouse_genomes_project 5 71675340 71675650 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011259.1 MGP_CASTEiJ_G0009447.1 mouse_genomes_project 5 21982138 21982376 - Gm25363 misc_RNA misc_RNA MGP_CASTEiJ_T0071599.1 MGP_CASTEiJ_G0028613.1 mouse_genomes_project 5 35712407 35805960 + MGP_CASTEiJ_P0071599 Stx18 protein_coding protein_coding MGP_CASTEiJ_T0071600.1 MGP_CASTEiJ_G0028613.1 mouse_genomes_project 5 35712446 35805586 + MGP_CASTEiJ_P0071600 Stx18 protein_coding protein_coding MGP_CASTEiJ_T0071601.1 MGP_CASTEiJ_G0028613.1 mouse_genomes_project 5 35712464 35805592 + MGP_CASTEiJ_P0071601 Stx18 protein_coding protein_coding MGP_CASTEiJ_T0071602.1 MGP_CASTEiJ_G0028613.1 mouse_genomes_project 5 35712495 35788603 + MGP_CASTEiJ_P0071602 Stx18 protein_coding protein_coding MGP_CASTEiJ_T0071603.1 MGP_CASTEiJ_G0028613.1 mouse_genomes_project 5 35748895 35800446 + MGP_CASTEiJ_P0071603 Stx18 protein_coding protein_coding MGP_CASTEiJ_T0071604.1 MGP_CASTEiJ_G0028613.1 mouse_genomes_project 5 35783465 35793682 + Stx18 protein_coding processed_transcript MGP_CASTEiJ_T0071605.1 MGP_CASTEiJ_G0028613.1 mouse_genomes_project 5 35793291 35800472 + Stx18 protein_coding retained_intron MGP_CASTEiJ_T0074718.1 MGP_CASTEiJ_G0029211.1 mouse_genomes_project 5 127457213 127530987 - MGP_CASTEiJ_P0074718 Scarb1 protein_coding protein_coding MGP_CASTEiJ_T0074719.1 MGP_CASTEiJ_G0029211.1 mouse_genomes_project 5 127457215 127530964 - MGP_CASTEiJ_P0074719 Scarb1 protein_coding protein_coding MGP_CASTEiJ_T0074720.1 MGP_CASTEiJ_G0029211.1 mouse_genomes_project 5 127457703 127474896 - MGP_CASTEiJ_P0074720 Scarb1 protein_coding protein_coding MGP_CASTEiJ_T0074721.1 MGP_CASTEiJ_G0029211.1 mouse_genomes_project 5 127457924 127464973 - Scarb1 protein_coding processed_transcript MGP_CASTEiJ_T0074722.1 MGP_CASTEiJ_G0029211.1 mouse_genomes_project 5 127463764 127467500 - Scarb1 protein_coding retained_intron MGP_CASTEiJ_T0074723.1 MGP_CASTEiJ_G0029211.1 mouse_genomes_project 5 127464157 127530912 - Scarb1 protein_coding retained_intron MGP_CASTEiJ_T0074724.1 MGP_CASTEiJ_G0029211.1 mouse_genomes_project 5 127483023 127490777 - Scarb1 protein_coding retained_intron MGP_CASTEiJ_T0074725.1 MGP_CASTEiJ_G0029211.1 mouse_genomes_project 5 127486074 127502895 - Scarb1 protein_coding processed_transcript MGP_CASTEiJ_T0074726.1 MGP_CASTEiJ_G0029211.1 mouse_genomes_project 5 127488913 127529901 - MGP_CASTEiJ_P0074726 Scarb1 protein_coding protein_coding MGP_CASTEiJ_T0074727.1 MGP_CASTEiJ_G0029211.1 mouse_genomes_project 5 127490483 127512504 - Scarb1 protein_coding processed_transcript MGP_CASTEiJ_T0074728.1 MGP_CASTEiJ_G0029211.1 mouse_genomes_project 5 127511497 127513954 - Scarb1 protein_coding retained_intron MGP_CASTEiJ_T0076047.1 MGP_CASTEiJ_G0029470.1 mouse_genomes_project 5 150207578 150209915 - MGP_CASTEiJ_P0076047 protein_coding protein_coding MGP_CASTEiJ_T0075761.1 MGP_CASTEiJ_G0029408.1 mouse_genomes_project 5 144199542 144203761 + Amz1 protein_coding processed_transcript MGP_CASTEiJ_T0075762.1 MGP_CASTEiJ_G0029408.1 mouse_genomes_project 5 144199542 144233324 + MGP_CASTEiJ_P0075762 Amz1 protein_coding protein_coding MGP_CASTEiJ_T0075763.1 MGP_CASTEiJ_G0029408.1 mouse_genomes_project 5 144199553 144200213 + Amz1 protein_coding processed_transcript MGP_CASTEiJ_T0075764.1 MGP_CASTEiJ_G0029408.1 mouse_genomes_project 5 144213997 144234717 + MGP_CASTEiJ_P0075764 Amz1 protein_coding protein_coding MGP_CASTEiJ_T0075765.1 MGP_CASTEiJ_G0029408.1 mouse_genomes_project 5 144214038 144221444 + Amz1 protein_coding processed_transcript MGP_CASTEiJ_T0075766.1 MGP_CASTEiJ_G0029408.1 mouse_genomes_project 5 144224105 144228362 + Amz1 protein_coding retained_intron MGP_CASTEiJ_T0075767.1 MGP_CASTEiJ_G0029408.1 mouse_genomes_project 5 144229471 144241465 + MGP_CASTEiJ_P0075767 Amz1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001816.1 MGP_CASTEiJ_G0001737.1 mouse_genomes_project 5 137859242 137862274 - TEC TEC MGP_CASTEiJ_T0014472.1 MGP_CASTEiJ_G0012635.1 mouse_genomes_project 5 53778831 53779537 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014353.1 MGP_CASTEiJ_G0012516.1 mouse_genomes_project 5 4908048 4908340 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098616.1 MGP_CASTEiJ_G0035547.1 mouse_genomes_project 5 92289046 92289153 - Gm24931 rRNA rRNA MGP_CASTEiJ_T0075441.1 MGP_CASTEiJ_G0029341.1 mouse_genomes_project 5 140677475 140691176 + MGP_CASTEiJ_P0075441 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0014371.1 MGP_CASTEiJ_G0012534.1 mouse_genomes_project 5 15766920 15767518 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071217.1 MGP_CASTEiJ_G0028552.1 mouse_genomes_project 5 30775613 30813487 + MGP_CASTEiJ_P0071217 Maea protein_coding protein_coding MGP_CASTEiJ_T0071218.1 MGP_CASTEiJ_G0028552.1 mouse_genomes_project 5 30775665 30802808 + MGP_CASTEiJ_P0071218 Maea protein_coding protein_coding MGP_CASTEiJ_T0071219.1 MGP_CASTEiJ_G0028552.1 mouse_genomes_project 5 30775669 30800480 + MGP_CASTEiJ_P0071219 Maea protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071220.1 MGP_CASTEiJ_G0028552.1 mouse_genomes_project 5 30776289 30800531 + MGP_CASTEiJ_P0071220 Maea protein_coding protein_coding MGP_CASTEiJ_T0071221.1 MGP_CASTEiJ_G0028552.1 mouse_genomes_project 5 30802683 30812021 + Maea protein_coding retained_intron MGP_CASTEiJ_T0071222.1 MGP_CASTEiJ_G0028552.1 mouse_genomes_project 5 30811796 30812740 + Maea protein_coding retained_intron MGP_CASTEiJ_T0072926.1 MGP_CASTEiJ_G0028874.1 mouse_genomes_project 5 96064230 96503627 + MGP_CASTEiJ_P0072926 Fras1 protein_coding protein_coding MGP_CASTEiJ_T0072927.1 MGP_CASTEiJ_G0028874.1 mouse_genomes_project 5 96064481 96249542 + Fras1 protein_coding retained_intron MGP_CASTEiJ_T0072928.1 MGP_CASTEiJ_G0028874.1 mouse_genomes_project 5 96064710 96079310 + Fras1 protein_coding retained_intron MGP_CASTEiJ_T0072929.1 MGP_CASTEiJ_G0028874.1 mouse_genomes_project 5 96322349 96345551 + Fras1 protein_coding processed_transcript MGP_CASTEiJ_T0072930.1 MGP_CASTEiJ_G0028874.1 mouse_genomes_project 5 96322566 96345663 + Fras1 protein_coding processed_transcript MGP_CASTEiJ_T0072931.1 MGP_CASTEiJ_G0028874.1 mouse_genomes_project 5 96336093 96345551 + Fras1 protein_coding processed_transcript MGP_CASTEiJ_T0101618.1 MGP_CASTEiJ_G0038477.1 mouse_genomes_project 5 72388244 72389114 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101619.1 MGP_CASTEiJ_G0038477.1 mouse_genomes_project 5 72388289 72398079 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101620.1 MGP_CASTEiJ_G0038477.1 mouse_genomes_project 5 72397902 72398356 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0074368.1 MGP_CASTEiJ_G0029159.1 mouse_genomes_project 5 124759116 124810765 - MGP_CASTEiJ_P0074368 Camkk2 protein_coding protein_coding MGP_CASTEiJ_T0074369.1 MGP_CASTEiJ_G0029159.1 mouse_genomes_project 5 124761145 124781751 - MGP_CASTEiJ_P0074369 Camkk2 protein_coding protein_coding MGP_CASTEiJ_T0074370.1 MGP_CASTEiJ_G0029159.1 mouse_genomes_project 5 124761767 124771262 - MGP_CASTEiJ_P0074370 Camkk2 protein_coding protein_coding MGP_CASTEiJ_T0074371.1 MGP_CASTEiJ_G0029159.1 mouse_genomes_project 5 124767771 124810787 - Camkk2 protein_coding retained_intron MGP_CASTEiJ_T0074372.1 MGP_CASTEiJ_G0029159.1 mouse_genomes_project 5 124773626 124793493 - MGP_CASTEiJ_P0074372 Camkk2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074373.1 MGP_CASTEiJ_G0029159.1 mouse_genomes_project 5 124775212 124810723 - Camkk2 protein_coding processed_transcript MGP_CASTEiJ_T0074374.1 MGP_CASTEiJ_G0029159.1 mouse_genomes_project 5 124781716 124810679 - MGP_CASTEiJ_P0074374 Camkk2 protein_coding protein_coding MGP_CASTEiJ_T0074375.1 MGP_CASTEiJ_G0029159.1 mouse_genomes_project 5 124784261 124810713 - MGP_CASTEiJ_P0074375 Camkk2 protein_coding protein_coding MGP_CASTEiJ_T0074376.1 MGP_CASTEiJ_G0029159.1 mouse_genomes_project 5 124785531 124810797 - Camkk2 protein_coding retained_intron MGP_CASTEiJ_T0074377.1 MGP_CASTEiJ_G0029159.1 mouse_genomes_project 5 124793633 124810703 - MGP_CASTEiJ_P0074377 Camkk2 protein_coding protein_coding MGP_CASTEiJ_T0072949.1 MGP_CASTEiJ_G0028878.1 mouse_genomes_project 5 97030394 97031669 + protein_coding retained_intron MGP_CASTEiJ_T0098987.1 MGP_CASTEiJ_G0035907.1 mouse_genomes_project 5 154481988 154482253 + Gm42558 sense_intronic sense_intronic MGP_CASTEiJ_T0074849.1 MGP_CASTEiJ_G0029237.1 mouse_genomes_project 5 132361042 132370405 - protein_coding retained_intron MGP_CASTEiJ_T0070613.1 MGP_CASTEiJ_G0028451.1 mouse_genomes_project 5 21538326 21543614 - MGP_CASTEiJ_P0070613 Cdk5 protein_coding protein_coding MGP_CASTEiJ_T0070614.1 MGP_CASTEiJ_G0028451.1 mouse_genomes_project 5 21539461 21543569 - MGP_CASTEiJ_P0070614 Cdk5 protein_coding protein_coding MGP_CASTEiJ_T0070615.1 MGP_CASTEiJ_G0028451.1 mouse_genomes_project 5 21541083 21542780 - Cdk5 protein_coding retained_intron MGP_CASTEiJ_T0014519.1 MGP_CASTEiJ_G0012682.1 mouse_genomes_project 5 73990413 73991358 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074880.1 MGP_CASTEiJ_G0029245.1 mouse_genomes_project 5 132658810 132669783 + MGP_CASTEiJ_P0074880 Kctd7 protein_coding protein_coding MGP_CASTEiJ_T0074881.1 MGP_CASTEiJ_G0029245.1 mouse_genomes_project 5 132658873 132665725 + MGP_CASTEiJ_P0074881 Kctd7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074882.1 MGP_CASTEiJ_G0029245.1 mouse_genomes_project 5 132659053 132666486 + MGP_CASTEiJ_P0074882 Kctd7 protein_coding protein_coding MGP_CASTEiJ_T0001576.1 MGP_CASTEiJ_G0001500.1 mouse_genomes_project 5 64204075 64205814 + TEC TEC MGP_CASTEiJ_T0008222.1 MGP_CASTEiJ_G0006684.1 mouse_genomes_project 5 147109235 147112658 - Gm42504 lincRNA lincRNA MGP_CASTEiJ_T0072102.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65069024 65084003 - Apbb2 protein_coding retained_intron MGP_CASTEiJ_T0072103.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65069046 65415411 - MGP_CASTEiJ_P0072103 Apbb2 protein_coding protein_coding MGP_CASTEiJ_T0072104.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65069049 65415334 - MGP_CASTEiJ_P0072104 Apbb2 protein_coding protein_coding MGP_CASTEiJ_T0072105.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65069049 65415437 - MGP_CASTEiJ_P0072105 Apbb2 protein_coding protein_coding MGP_CASTEiJ_T0072106.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65069161 65415316 - MGP_CASTEiJ_P0072106 Apbb2 protein_coding protein_coding MGP_CASTEiJ_T0072107.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65070972 65278070 - Apbb2 protein_coding retained_intron MGP_CASTEiJ_T0072108.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65072182 65109539 - Apbb2 protein_coding processed_transcript MGP_CASTEiJ_T0072109.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65072194 65415324 - MGP_CASTEiJ_P0072109 Apbb2 protein_coding protein_coding MGP_CASTEiJ_T0072110.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65072194 65415324 - MGP_CASTEiJ_P0072110 Apbb2 protein_coding protein_coding MGP_CASTEiJ_T0072111.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65072511 65278069 - MGP_CASTEiJ_P0072111 Apbb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072112.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65077884 65109337 - Apbb2 protein_coding processed_transcript MGP_CASTEiJ_T0072113.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65177485 65415323 - Apbb2 protein_coding retained_intron MGP_CASTEiJ_T0072114.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65177485 65415336 - Apbb2 protein_coding retained_intron MGP_CASTEiJ_T0072115.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65235922 65415293 - MGP_CASTEiJ_P0072115 Apbb2 protein_coding protein_coding MGP_CASTEiJ_T0072116.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65235935 65303340 - MGP_CASTEiJ_P0072116 Apbb2 protein_coding protein_coding MGP_CASTEiJ_T0072117.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65235964 65415324 - MGP_CASTEiJ_P0072117 Apbb2 protein_coding protein_coding MGP_CASTEiJ_T0072118.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65236168 65415427 - MGP_CASTEiJ_P0072118 Apbb2 protein_coding protein_coding MGP_CASTEiJ_T0072119.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65236201 65303347 - MGP_CASTEiJ_P0072119 Apbb2 protein_coding protein_coding MGP_CASTEiJ_T0072120.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65236207 65340074 - MGP_CASTEiJ_P0072120 Apbb2 protein_coding protein_coding MGP_CASTEiJ_T0072121.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65245814 65415325 - Apbb2 protein_coding retained_intron MGP_CASTEiJ_T0072122.1 MGP_CASTEiJ_G0028697.1 mouse_genomes_project 5 65332403 65415341 - Apbb2 protein_coding retained_intron MGP_CASTEiJ_T0001577.1 MGP_CASTEiJ_G0001501.1 mouse_genomes_project 5 64281295 64284143 + TEC TEC MGP_CASTEiJ_T0010379.1 MGP_CASTEiJ_G0008567.1 mouse_genomes_project 5 46075841 46075951 + Mir218-1 miRNA miRNA MGP_CASTEiJ_T0001417.1 MGP_CASTEiJ_G0001346.1 mouse_genomes_project 5 20450847 20451632 + TEC TEC MGP_CASTEiJ_T0071404.1 MGP_CASTEiJ_G0028579.1 mouse_genomes_project 5 32260703 32329785 + Htt protein_coding retained_intron MGP_CASTEiJ_T0071405.1 MGP_CASTEiJ_G0028579.1 mouse_genomes_project 5 32260707 32417653 + MGP_CASTEiJ_P0071405 Htt protein_coding protein_coding MGP_CASTEiJ_T0071406.1 MGP_CASTEiJ_G0028579.1 mouse_genomes_project 5 32260724 32319311 + Htt protein_coding retained_intron MGP_CASTEiJ_T0071407.1 MGP_CASTEiJ_G0028579.1 mouse_genomes_project 5 32300784 32303397 + Htt protein_coding retained_intron MGP_CASTEiJ_T0071408.1 MGP_CASTEiJ_G0028579.1 mouse_genomes_project 5 32311539 32316601 + Htt protein_coding retained_intron MGP_CASTEiJ_T0071409.1 MGP_CASTEiJ_G0028579.1 mouse_genomes_project 5 32314815 32317088 + Htt protein_coding retained_intron MGP_CASTEiJ_T0071410.1 MGP_CASTEiJ_G0028579.1 mouse_genomes_project 5 32382450 32390246 + Htt protein_coding retained_intron MGP_CASTEiJ_T0071411.1 MGP_CASTEiJ_G0028579.1 mouse_genomes_project 5 32391718 32408967 + Htt protein_coding retained_intron MGP_CASTEiJ_T0010382.1 MGP_CASTEiJ_G0008570.1 mouse_genomes_project 5 62652774 62652852 - Gm23967 miRNA miRNA MGP_CASTEiJ_T0001637.1 MGP_CASTEiJ_G0001560.1 mouse_genomes_project 5 73659884 73661216 + TEC TEC MGP_CASTEiJ_T0004682.1 MGP_CASTEiJ_G0004044.1 mouse_genomes_project 5 123659156 123673349 - Gm16552 antisense antisense MGP_CASTEiJ_T0075646.1 MGP_CASTEiJ_G0029381.1 mouse_genomes_project 5 142611059 142647692 - Adap1 protein_coding processed_transcript MGP_CASTEiJ_T0075647.1 MGP_CASTEiJ_G0029381.1 mouse_genomes_project 5 142611059 142669884 - MGP_CASTEiJ_P0075647 Adap1 protein_coding protein_coding MGP_CASTEiJ_T0075648.1 MGP_CASTEiJ_G0029381.1 mouse_genomes_project 5 142611959 142644541 - Adap1 protein_coding processed_transcript MGP_CASTEiJ_T0075649.1 MGP_CASTEiJ_G0029381.1 mouse_genomes_project 5 142612036 142669708 - MGP_CASTEiJ_P0075649 Adap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0075650.1 MGP_CASTEiJ_G0029381.1 mouse_genomes_project 5 142612041 142647664 - Adap1 protein_coding processed_transcript MGP_CASTEiJ_T0075651.1 MGP_CASTEiJ_G0029381.1 mouse_genomes_project 5 142612113 142613838 - Adap1 protein_coding retained_intron MGP_CASTEiJ_T0075652.1 MGP_CASTEiJ_G0029381.1 mouse_genomes_project 5 142621397 142650154 - Adap1 protein_coding retained_intron MGP_CASTEiJ_T0001613.1 MGP_CASTEiJ_G0001537.1 mouse_genomes_project 5 68074526 68077404 - TEC TEC MGP_CASTEiJ_T0070384.1 MGP_CASTEiJ_G0028408.1 mouse_genomes_project 5 10195033 10415018 + protein_coding processed_transcript MGP_CASTEiJ_T0070385.1 MGP_CASTEiJ_G0028408.1 mouse_genomes_project 5 10195112 10391644 + protein_coding retained_intron MGP_CASTEiJ_T0070386.1 MGP_CASTEiJ_G0028408.1 mouse_genomes_project 5 10195213 10648276 + protein_coding retained_intron MGP_CASTEiJ_T0070387.1 MGP_CASTEiJ_G0028408.1 mouse_genomes_project 5 10505519 10734670 + MGP_CASTEiJ_P0070387 protein_coding protein_coding MGP_CASTEiJ_T0070388.1 MGP_CASTEiJ_G0028408.1 mouse_genomes_project 5 10507159 10567682 + MGP_CASTEiJ_P0070388 protein_coding protein_coding MGP_CASTEiJ_T0070389.1 MGP_CASTEiJ_G0028408.1 mouse_genomes_project 5 10507468 10733030 + MGP_CASTEiJ_P0070389 protein_coding protein_coding MGP_CASTEiJ_T0070390.1 MGP_CASTEiJ_G0028408.1 mouse_genomes_project 5 10507818 10736247 + MGP_CASTEiJ_P0070390 protein_coding protein_coding MGP_CASTEiJ_T0070391.1 MGP_CASTEiJ_G0028408.1 mouse_genomes_project 5 10507833 10567652 + MGP_CASTEiJ_P0070391 protein_coding protein_coding MGP_CASTEiJ_T0070392.1 MGP_CASTEiJ_G0028408.1 mouse_genomes_project 5 10508086 10616836 + protein_coding processed_transcript MGP_CASTEiJ_T0001784.1 MGP_CASTEiJ_G0001706.1 mouse_genomes_project 5 133560347 133561493 - TEC TEC MGP_CASTEiJ_T0074571.1 MGP_CASTEiJ_G0029189.1 mouse_genomes_project 5 126202144 126245323 - MGP_CASTEiJ_P0074571 Abcb9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0074572.1 MGP_CASTEiJ_G0029189.1 mouse_genomes_project 5 126206603 126245368 - MGP_CASTEiJ_P0074572 Abcb9 protein_coding protein_coding MGP_CASTEiJ_T0074573.1 MGP_CASTEiJ_G0029189.1 mouse_genomes_project 5 126207498 126227297 - Abcb9 protein_coding retained_intron MGP_CASTEiJ_T0074574.1 MGP_CASTEiJ_G0029189.1 mouse_genomes_project 5 126216817 126239841 - MGP_CASTEiJ_P0074574 Abcb9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074575.1 MGP_CASTEiJ_G0029189.1 mouse_genomes_project 5 126216821 126239841 - MGP_CASTEiJ_P0074575 Abcb9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074576.1 MGP_CASTEiJ_G0029189.1 mouse_genomes_project 5 126224303 126227996 - Abcb9 protein_coding processed_transcript MGP_CASTEiJ_T0074577.1 MGP_CASTEiJ_G0029189.1 mouse_genomes_project 5 126237558 126245356 - Abcb9 protein_coding retained_intron MGP_CASTEiJ_T0007904.1 MGP_CASTEiJ_G0006457.1 mouse_genomes_project 5 35652280 35654658 + Gm42505 lincRNA lincRNA MGP_CASTEiJ_T0001549.1 MGP_CASTEiJ_G0001474.1 mouse_genomes_project 5 56067660 56069608 + TEC TEC MGP_CASTEiJ_T0073565.1 MGP_CASTEiJ_G0029009.1 mouse_genomes_project 5 113293731 113296272 - Srrd protein_coding processed_transcript MGP_CASTEiJ_T0073566.1 MGP_CASTEiJ_G0029009.1 mouse_genomes_project 5 113293731 113299271 - MGP_CASTEiJ_P0073566 Srrd protein_coding protein_coding MGP_CASTEiJ_T0073567.1 MGP_CASTEiJ_G0029009.1 mouse_genomes_project 5 113293731 113299291 - MGP_CASTEiJ_P0073567 Srrd protein_coding protein_coding MGP_CASTEiJ_T0073568.1 MGP_CASTEiJ_G0029009.1 mouse_genomes_project 5 113293738 113299274 - MGP_CASTEiJ_P0073568 Srrd protein_coding unknown_likely_coding MGP_CASTEiJ_T0073569.1 MGP_CASTEiJ_G0029009.1 mouse_genomes_project 5 113294248 113296182 - Srrd protein_coding retained_intron MGP_CASTEiJ_T0073570.1 MGP_CASTEiJ_G0029009.1 mouse_genomes_project 5 113294315 113299269 - Srrd protein_coding processed_transcript MGP_CASTEiJ_T0073571.1 MGP_CASTEiJ_G0029009.1 mouse_genomes_project 5 113295968 113296469 - Srrd protein_coding processed_transcript MGP_CASTEiJ_T0073968.1 MGP_CASTEiJ_G0029086.1 mouse_genomes_project 5 117806271 117824891 - MGP_CASTEiJ_P0073968 Srrm4 protein_coding protein_coding MGP_CASTEiJ_T0073969.1 MGP_CASTEiJ_G0029086.1 mouse_genomes_project 5 117806281 117825015 - Srrm4 protein_coding retained_intron MGP_CASTEiJ_T0073970.1 MGP_CASTEiJ_G0029086.1 mouse_genomes_project 5 117806282 117983715 - MGP_CASTEiJ_P0073970 Srrm4 protein_coding protein_coding MGP_CASTEiJ_T0073971.1 MGP_CASTEiJ_G0029086.1 mouse_genomes_project 5 117849306 117850094 - Srrm4 protein_coding retained_intron MGP_CASTEiJ_T0004539.1 MGP_CASTEiJ_G0003940.1 mouse_genomes_project 5 33280433 33282370 + Gm15650 antisense antisense MGP_CASTEiJ_T0075157.1 MGP_CASTEiJ_G0029290.1 mouse_genomes_project 5 138545991 138621017 + MGP_CASTEiJ_P0075157 Por protein_coding protein_coding MGP_CASTEiJ_T0075158.1 MGP_CASTEiJ_G0029290.1 mouse_genomes_project 5 138550658 138562807 + Por protein_coding processed_transcript MGP_CASTEiJ_T0075159.1 MGP_CASTEiJ_G0029290.1 mouse_genomes_project 5 138550662 138620473 + MGP_CASTEiJ_P0075159 Por protein_coding protein_coding MGP_CASTEiJ_T0075160.1 MGP_CASTEiJ_G0029290.1 mouse_genomes_project 5 138570231 138624677 + MGP_CASTEiJ_P0075160 Por protein_coding protein_coding MGP_CASTEiJ_T0075161.1 MGP_CASTEiJ_G0029290.1 mouse_genomes_project 5 138570353 138624677 + MGP_CASTEiJ_P0075161 Por protein_coding protein_coding MGP_CASTEiJ_T0075163.1 MGP_CASTEiJ_G0029290.1 mouse_genomes_project 5 138601043 138621228 + Por protein_coding retained_intron MGP_CASTEiJ_T0075164.1 MGP_CASTEiJ_G0029290.1 mouse_genomes_project 5 138615082 138619594 + MGP_CASTEiJ_P0075164 Por protein_coding protein_coding MGP_CASTEiJ_T0075165.1 MGP_CASTEiJ_G0029290.1 mouse_genomes_project 5 138620905 138623263 + Por protein_coding retained_intron MGP_CASTEiJ_T0075166.1 MGP_CASTEiJ_G0029290.1 mouse_genomes_project 5 138622527 138623395 + Por protein_coding retained_intron MGP_CASTEiJ_T0074470.1 MGP_CASTEiJ_G0029172.1 mouse_genomes_project 5 125490232 125545073 + MGP_CASTEiJ_P0074470 Mlxip protein_coding protein_coding MGP_CASTEiJ_T0074471.1 MGP_CASTEiJ_G0029172.1 mouse_genomes_project 5 125490234 125558283 + MGP_CASTEiJ_P0074471 Mlxip protein_coding protein_coding MGP_CASTEiJ_T0074472.1 MGP_CASTEiJ_G0029172.1 mouse_genomes_project 5 125544216 125558280 + MGP_CASTEiJ_P0074472 Mlxip protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074473.1 MGP_CASTEiJ_G0029172.1 mouse_genomes_project 5 125549624 125553899 + Mlxip protein_coding processed_transcript MGP_CASTEiJ_T0001770.1 MGP_CASTEiJ_G0001692.1 mouse_genomes_project 5 130610150 130612099 - TEC TEC MGP_CASTEiJ_T0010415.1 MGP_CASTEiJ_G0008603.1 mouse_genomes_project 5 124708591 124708710 + Mir8115 miRNA miRNA MGP_CASTEiJ_T0101147.1 MGP_CASTEiJ_G0038060.1 mouse_genomes_project 5 150982126 150982197 + Gm25091 snoRNA snoRNA MGP_CASTEiJ_T0074255.1 MGP_CASTEiJ_G0029142.1 mouse_genomes_project 5 123820564 124037983 - MGP_CASTEiJ_P0074255 protein_coding protein_coding MGP_CASTEiJ_T0074256.1 MGP_CASTEiJ_G0029142.1 mouse_genomes_project 5 123827538 124035951 - MGP_CASTEiJ_P0074256 protein_coding protein_coding MGP_CASTEiJ_T0074257.1 MGP_CASTEiJ_G0029142.1 mouse_genomes_project 5 123827630 123833295 - protein_coding retained_intron MGP_CASTEiJ_T0074258.1 MGP_CASTEiJ_G0029142.1 mouse_genomes_project 5 123827630 123903420 - MGP_CASTEiJ_P0074258 protein_coding protein_coding MGP_CASTEiJ_T0074259.1 MGP_CASTEiJ_G0029142.1 mouse_genomes_project 5 123827917 123908704 - MGP_CASTEiJ_P0074259 protein_coding unknown_likely_coding MGP_CASTEiJ_T0074260.1 MGP_CASTEiJ_G0029142.1 mouse_genomes_project 5 123841233 123842469 - protein_coding retained_intron MGP_CASTEiJ_T0074261.1 MGP_CASTEiJ_G0029142.1 mouse_genomes_project 5 123847958 123885672 - protein_coding processed_transcript MGP_CASTEiJ_T0074262.1 MGP_CASTEiJ_G0029142.1 mouse_genomes_project 5 123847964 123864899 - protein_coding processed_transcript MGP_CASTEiJ_T0074263.1 MGP_CASTEiJ_G0029142.1 mouse_genomes_project 5 123853158 124038234 - MGP_CASTEiJ_P0074263 protein_coding protein_coding MGP_CASTEiJ_T0074264.1 MGP_CASTEiJ_G0029142.1 mouse_genomes_project 5 123855826 123985851 - MGP_CASTEiJ_P0074264 protein_coding protein_coding MGP_CASTEiJ_T0074265.1 MGP_CASTEiJ_G0029142.1 mouse_genomes_project 5 123864926 123887327 - protein_coding processed_transcript MGP_CASTEiJ_T0074266.1 MGP_CASTEiJ_G0029142.1 mouse_genomes_project 5 123903394 124036017 - protein_coding processed_transcript MGP_CASTEiJ_T0008231.1 MGP_CASTEiJ_G0006691.1 mouse_genomes_project 5 150932701 150947581 + Gm43741 lincRNA lincRNA MGP_CASTEiJ_T0001429.1 MGP_CASTEiJ_G0001357.1 mouse_genomes_project 5 26467227 26471545 - TEC TEC MGP_CASTEiJ_T0074457.1 MGP_CASTEiJ_G0029170.1 mouse_genomes_project 5 125339391 125418569 + MGP_CASTEiJ_P0074457 Wdr66 protein_coding protein_coding MGP_CASTEiJ_T0074458.1 MGP_CASTEiJ_G0029170.1 mouse_genomes_project 5 125339420 125417879 + MGP_CASTEiJ_P0074458 Wdr66 protein_coding unknown_likely_coding MGP_CASTEiJ_T0074459.1 MGP_CASTEiJ_G0029170.1 mouse_genomes_project 5 125358591 125385937 + Wdr66 protein_coding retained_intron MGP_CASTEiJ_T0074460.1 MGP_CASTEiJ_G0029170.1 mouse_genomes_project 5 125358591 125385939 + MGP_CASTEiJ_P0074460 Wdr66 protein_coding protein_coding MGP_CASTEiJ_T0074461.1 MGP_CASTEiJ_G0029170.1 mouse_genomes_project 5 125358591 125381950 + MGP_CASTEiJ_P0074461 Wdr66 protein_coding protein_coding MGP_CASTEiJ_T0074462.1 MGP_CASTEiJ_G0029170.1 mouse_genomes_project 5 125360488 125385888 + Wdr66 protein_coding retained_intron MGP_CASTEiJ_T0074463.1 MGP_CASTEiJ_G0029170.1 mouse_genomes_project 5 125365195 125366654 + Wdr66 protein_coding retained_intron MGP_CASTEiJ_T0074464.1 MGP_CASTEiJ_G0029170.1 mouse_genomes_project 5 125378137 125417879 + MGP_CASTEiJ_P0074464 Wdr66 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074465.1 MGP_CASTEiJ_G0029170.1 mouse_genomes_project 5 125382036 125417715 + MGP_CASTEiJ_P0074465 Wdr66 protein_coding protein_coding MGP_CASTEiJ_T0074466.1 MGP_CASTEiJ_G0029170.1 mouse_genomes_project 5 125393001 125417734 + Wdr66 protein_coding retained_intron MGP_CASTEiJ_T0073424.1 MGP_CASTEiJ_G0028984.1 mouse_genomes_project 5 110948816 110949585 + MGP_CASTEiJ_P0073424 Chfr protein_coding protein_coding MGP_CASTEiJ_T0073425.1 MGP_CASTEiJ_G0028984.1 mouse_genomes_project 5 110948823 110987795 + MGP_CASTEiJ_P0073425 Chfr protein_coding protein_coding MGP_CASTEiJ_T0073426.1 MGP_CASTEiJ_G0028984.1 mouse_genomes_project 5 110948823 110979341 + MGP_CASTEiJ_P0073426 Chfr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073427.1 MGP_CASTEiJ_G0028984.1 mouse_genomes_project 5 110948825 110987345 + MGP_CASTEiJ_P0073427 Chfr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073428.1 MGP_CASTEiJ_G0028984.1 mouse_genomes_project 5 110948831 110987484 + MGP_CASTEiJ_P0073428 Chfr protein_coding protein_coding MGP_CASTEiJ_T0073429.1 MGP_CASTEiJ_G0028984.1 mouse_genomes_project 5 110948834 110984227 + Chfr protein_coding retained_intron MGP_CASTEiJ_T0073430.1 MGP_CASTEiJ_G0028984.1 mouse_genomes_project 5 110948834 110987796 + MGP_CASTEiJ_P0073430 Chfr protein_coding protein_coding MGP_CASTEiJ_T0073431.1 MGP_CASTEiJ_G0028984.1 mouse_genomes_project 5 110948852 110987793 + MGP_CASTEiJ_P0073431 Chfr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073432.1 MGP_CASTEiJ_G0028984.1 mouse_genomes_project 5 110948881 110959567 + MGP_CASTEiJ_P0073432 Chfr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073433.1 MGP_CASTEiJ_G0028984.1 mouse_genomes_project 5 110948899 110956683 + MGP_CASTEiJ_P0073433 Chfr protein_coding protein_coding MGP_CASTEiJ_T0073434.1 MGP_CASTEiJ_G0028984.1 mouse_genomes_project 5 110970913 110978488 + Chfr protein_coding retained_intron MGP_CASTEiJ_T0073435.1 MGP_CASTEiJ_G0028984.1 mouse_genomes_project 5 110979339 110986830 + Chfr protein_coding retained_intron MGP_CASTEiJ_T0073972.1 MGP_CASTEiJ_G0029087.1 mouse_genomes_project 5 118521442 118545903 - MGP_CASTEiJ_P0073972 Suds3 protein_coding protein_coding MGP_CASTEiJ_T0073973.1 MGP_CASTEiJ_G0029087.1 mouse_genomes_project 5 118521447 118534198 - Suds3 protein_coding retained_intron MGP_CASTEiJ_T0073974.1 MGP_CASTEiJ_G0029087.1 mouse_genomes_project 5 118522188 118545766 - MGP_CASTEiJ_P0073974 Suds3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073975.1 MGP_CASTEiJ_G0029087.1 mouse_genomes_project 5 118522196 118546018 - MGP_CASTEiJ_P0073975 Suds3 protein_coding protein_coding MGP_CASTEiJ_T0073976.1 MGP_CASTEiJ_G0029087.1 mouse_genomes_project 5 118524723 118528594 - Suds3 protein_coding retained_intron MGP_CASTEiJ_T0073977.1 MGP_CASTEiJ_G0029087.1 mouse_genomes_project 5 118535084 118543461 - Suds3 protein_coding retained_intron MGP_CASTEiJ_T0073978.1 MGP_CASTEiJ_G0029087.1 mouse_genomes_project 5 118535090 118539659 - Suds3 protein_coding retained_intron MGP_CASTEiJ_T0001561.1 MGP_CASTEiJ_G0001486.1 mouse_genomes_project 5 58351550 58354154 - TEC TEC MGP_CASTEiJ_T0001531.1 MGP_CASTEiJ_G0001456.1 mouse_genomes_project 5 49846014 49849572 - TEC TEC MGP_CASTEiJ_T0074700.1 MGP_CASTEiJ_G0029209.1 mouse_genomes_project 5 127153782 127164905 + MGP_CASTEiJ_P0074700 Fam101a protein_coding protein_coding MGP_CASTEiJ_T0074701.1 MGP_CASTEiJ_G0029209.1 mouse_genomes_project 5 127155817 127164904 + MGP_CASTEiJ_P0074701 Fam101a protein_coding protein_coding MGP_CASTEiJ_T0074702.1 MGP_CASTEiJ_G0029209.1 mouse_genomes_project 5 127162469 127163850 + Fam101a protein_coding processed_transcript MGP_CASTEiJ_T0010411.1 MGP_CASTEiJ_G0008599.1 mouse_genomes_project 5 122655173 122655299 - Gm22907 miRNA miRNA MGP_CASTEiJ_T0010406.1 MGP_CASTEiJ_G0008594.1 mouse_genomes_project 5 115550871 115550943 + Mir7027 miRNA miRNA MGP_CASTEiJ_T0008078.1 MGP_CASTEiJ_G0006590.1 mouse_genomes_project 5 112489226 112489896 + Gm42489 lincRNA lincRNA MGP_CASTEiJ_T0074337.1 MGP_CASTEiJ_G0029155.1 mouse_genomes_project 5 124467978 124517033 - MGP_CASTEiJ_P0074337 Atp2a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074338.1 MGP_CASTEiJ_G0029155.1 mouse_genomes_project 5 124467979 124516754 - MGP_CASTEiJ_P0074338 Atp2a2 protein_coding protein_coding MGP_CASTEiJ_T0074339.1 MGP_CASTEiJ_G0029155.1 mouse_genomes_project 5 124470798 124517084 - MGP_CASTEiJ_P0074339 Atp2a2 protein_coding protein_coding MGP_CASTEiJ_T0074340.1 MGP_CASTEiJ_G0029155.1 mouse_genomes_project 5 124503913 124516474 - Atp2a2 protein_coding processed_transcript MGP_CASTEiJ_T0074341.1 MGP_CASTEiJ_G0029155.1 mouse_genomes_project 5 124503966 124516470 - Atp2a2 protein_coding retained_intron MGP_CASTEiJ_T0010374.1 MGP_CASTEiJ_G0008562.1 mouse_genomes_project 5 32057820 32057883 + Mir7036b miRNA miRNA MGP_CASTEiJ_T0071595.1 MGP_CASTEiJ_G0028611.1 mouse_genomes_project 5 35391639 35395978 + MGP_CASTEiJ_P0071595 Cytl1 protein_coding protein_coding MGP_CASTEiJ_T0071596.1 MGP_CASTEiJ_G0028611.1 mouse_genomes_project 5 35393431 35395973 + Cytl1 protein_coding retained_intron MGP_CASTEiJ_T0004638.1 MGP_CASTEiJ_G0004013.1 mouse_genomes_project 5 111078180 111090814 + Gm15788 antisense antisense MGP_CASTEiJ_T0004639.1 MGP_CASTEiJ_G0004013.1 mouse_genomes_project 5 111078180 111091124 + Gm15788 antisense antisense MGP_CASTEiJ_T0014545.1 MGP_CASTEiJ_G0012708.1 mouse_genomes_project 5 87671805 87671900 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014498.1 MGP_CASTEiJ_G0012661.1 mouse_genomes_project 5 62744760 62745619 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074045.1 MGP_CASTEiJ_G0029100.1 mouse_genomes_project 5 119751167 119772551 + MGP_CASTEiJ_P0074045 2410131K14Rik protein_coding protein_coding MGP_CASTEiJ_T0074046.1 MGP_CASTEiJ_G0029100.1 mouse_genomes_project 5 119751196 119767784 + MGP_CASTEiJ_P0074046 2410131K14Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0074814.1 MGP_CASTEiJ_G0029231.1 mouse_genomes_project 5 132170452 132180275 - Sept14 protein_coding processed_transcript MGP_CASTEiJ_T0074815.1 MGP_CASTEiJ_G0029231.1 mouse_genomes_project 5 132170463 132192571 - MGP_CASTEiJ_P0074815 Sept14 protein_coding protein_coding MGP_CASTEiJ_T0074816.1 MGP_CASTEiJ_G0029231.1 mouse_genomes_project 5 132170500 132197541 - MGP_CASTEiJ_P0074816 Sept14 protein_coding protein_coding MGP_CASTEiJ_T0004677.1 MGP_CASTEiJ_G0004039.1 mouse_genomes_project 5 122210743 122211801 - Gm15690 antisense antisense MGP_CASTEiJ_T0001564.1 MGP_CASTEiJ_G0001489.1 mouse_genomes_project 5 62182417 62187141 - TEC TEC MGP_CASTEiJ_T0001565.1 MGP_CASTEiJ_G0001489.1 mouse_genomes_project 5 62186196 62186511 - TEC TEC MGP_CASTEiJ_T0075547.1 MGP_CASTEiJ_G0029365.1 mouse_genomes_project 5 141420332 141424642 - MGP_CASTEiJ_P0075547 BC037034 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075548.1 MGP_CASTEiJ_G0029365.1 mouse_genomes_project 5 141420333 141424685 - BC037034 protein_coding retained_intron MGP_CASTEiJ_T0075549.1 MGP_CASTEiJ_G0029365.1 mouse_genomes_project 5 141420775 141421616 - MGP_CASTEiJ_P0075549 BC037034 protein_coding protein_coding MGP_CASTEiJ_T0075550.1 MGP_CASTEiJ_G0029365.1 mouse_genomes_project 5 141420911 141424484 - MGP_CASTEiJ_P0075550 BC037034 protein_coding protein_coding MGP_CASTEiJ_T0075551.1 MGP_CASTEiJ_G0029365.1 mouse_genomes_project 5 141422221 141422846 - BC037034 protein_coding retained_intron MGP_CASTEiJ_T0075552.1 MGP_CASTEiJ_G0029365.1 mouse_genomes_project 5 141422904 141423790 - BC037034 protein_coding retained_intron MGP_CASTEiJ_T0017424.1 MGP_CASTEiJ_G0014923.1 mouse_genomes_project 5 90655781 90694037 - Gm43448 processed_transcript processed_transcript MGP_CASTEiJ_T0017425.1 MGP_CASTEiJ_G0014923.1 mouse_genomes_project 5 90675802 90694057 - Gm43448 processed_transcript processed_transcript MGP_CASTEiJ_T0075640.1 MGP_CASTEiJ_G0029380.1 mouse_genomes_project 5 142591412 142609217 + MGP_CASTEiJ_P0075640 Get4 protein_coding protein_coding MGP_CASTEiJ_T0075641.1 MGP_CASTEiJ_G0029380.1 mouse_genomes_project 5 142591458 142606307 + MGP_CASTEiJ_P0075641 Get4 protein_coding protein_coding MGP_CASTEiJ_T0075642.1 MGP_CASTEiJ_G0029380.1 mouse_genomes_project 5 142592581 142606400 + MGP_CASTEiJ_P0075642 Get4 protein_coding protein_coding MGP_CASTEiJ_T0075643.1 MGP_CASTEiJ_G0029380.1 mouse_genomes_project 5 142592595 142608495 + MGP_CASTEiJ_P0075643 Get4 protein_coding protein_coding MGP_CASTEiJ_T0075644.1 MGP_CASTEiJ_G0029380.1 mouse_genomes_project 5 142606032 142606604 + Get4 protein_coding retained_intron MGP_CASTEiJ_T0075645.1 MGP_CASTEiJ_G0029380.1 mouse_genomes_project 5 142606096 142608868 + Get4 protein_coding retained_intron MGP_CASTEiJ_T0072029.1 MGP_CASTEiJ_G0028687.1 mouse_genomes_project 5 64081472 64150254 - MGP_CASTEiJ_P0072029 Gm43552 protein_coding protein_coding MGP_CASTEiJ_T0014373.1 MGP_CASTEiJ_G0012536.1 mouse_genomes_project 5 16461042 16462739 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001652.1 MGP_CASTEiJ_G0001575.1 mouse_genomes_project 5 91934543 91935353 - TEC TEC MGP_CASTEiJ_T0001486.1 MGP_CASTEiJ_G0001412.1 mouse_genomes_project 5 42526086 42528811 - TEC TEC MGP_CASTEiJ_T0075706.1 MGP_CASTEiJ_G0029395.1 mouse_genomes_project 5 143208038 143211336 - MGP_CASTEiJ_P0075706 Psmg3 protein_coding protein_coding MGP_CASTEiJ_T0075707.1 MGP_CASTEiJ_G0029395.1 mouse_genomes_project 5 143208059 143211294 - MGP_CASTEiJ_P0075707 Psmg3 protein_coding protein_coding MGP_CASTEiJ_T0075708.1 MGP_CASTEiJ_G0029395.1 mouse_genomes_project 5 143208913 143211326 - Psmg3 protein_coding retained_intron MGP_CASTEiJ_T0075175.1 MGP_CASTEiJ_G0029294.1 mouse_genomes_project 5 138674258 138687371 + MGP_CASTEiJ_P0075175 Mdh2 protein_coding protein_coding MGP_CASTEiJ_T0075176.1 MGP_CASTEiJ_G0029294.1 mouse_genomes_project 5 138674414 138676054 + Mdh2 protein_coding retained_intron MGP_CASTEiJ_T0075177.1 MGP_CASTEiJ_G0029294.1 mouse_genomes_project 5 138674440 138687378 + MGP_CASTEiJ_P0075177 Mdh2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075178.1 MGP_CASTEiJ_G0029294.1 mouse_genomes_project 5 138674455 138680462 + Mdh2 protein_coding retained_intron MGP_CASTEiJ_T0075179.1 MGP_CASTEiJ_G0029294.1 mouse_genomes_project 5 138674463 138683521 + MGP_CASTEiJ_P0075179 Mdh2 protein_coding protein_coding MGP_CASTEiJ_T0075180.1 MGP_CASTEiJ_G0029294.1 mouse_genomes_project 5 138674467 138682186 + MGP_CASTEiJ_P0075180 Mdh2 protein_coding protein_coding MGP_CASTEiJ_T0075181.1 MGP_CASTEiJ_G0029294.1 mouse_genomes_project 5 138674500 138679543 + Mdh2 protein_coding retained_intron MGP_CASTEiJ_T0014520.1 MGP_CASTEiJ_G0012683.1 mouse_genomes_project 5 74159152 74162069 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099858.1 MGP_CASTEiJ_G0036771.1 mouse_genomes_project 5 6164663 6164830 + Gm24666 snRNA snRNA MGP_CASTEiJ_T0004726.1 MGP_CASTEiJ_G0004076.1 mouse_genomes_project 5 139042240 139044120 - Gm15701 antisense antisense MGP_CASTEiJ_T0014635.1 MGP_CASTEiJ_G0012798.1 mouse_genomes_project 5 125132682 125133140 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001833.1 MGP_CASTEiJ_G0001754.1 mouse_genomes_project 5 147251413 147252498 + TEC TEC MGP_CASTEiJ_T0010438.1 MGP_CASTEiJ_G0008626.1 mouse_genomes_project 5 144523771 144523852 + Gm44385 miRNA miRNA MGP_CASTEiJ_T0014481.1 MGP_CASTEiJ_G0012644.1 mouse_genomes_project 5 57300967 57301668 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073389.1 MGP_CASTEiJ_G0028976.1 mouse_genomes_project 5 109384110 109396449 + MGP_CASTEiJ_P0073389 Fgfrl1 protein_coding protein_coding MGP_CASTEiJ_T0073390.1 MGP_CASTEiJ_G0028976.1 mouse_genomes_project 5 109386964 109396252 + MGP_CASTEiJ_P0073390 Fgfrl1 protein_coding protein_coding MGP_CASTEiJ_T0073391.1 MGP_CASTEiJ_G0028976.1 mouse_genomes_project 5 109387002 109399837 + MGP_CASTEiJ_P0073391 Fgfrl1 protein_coding protein_coding MGP_CASTEiJ_T0073392.1 MGP_CASTEiJ_G0028976.1 mouse_genomes_project 5 109387236 109399809 + MGP_CASTEiJ_P0073392 Fgfrl1 protein_coding protein_coding MGP_CASTEiJ_T0073393.1 MGP_CASTEiJ_G0028976.1 mouse_genomes_project 5 109387705 109401483 + MGP_CASTEiJ_P0073393 Fgfrl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073394.1 MGP_CASTEiJ_G0028976.1 mouse_genomes_project 5 109397986 109398785 + Fgfrl1 protein_coding retained_intron MGP_CASTEiJ_T0008142.1 MGP_CASTEiJ_G0006634.1 mouse_genomes_project 5 122040114 122046514 - Gm42654 lincRNA lincRNA MGP_CASTEiJ_T0008143.1 MGP_CASTEiJ_G0006634.1 mouse_genomes_project 5 122040122 122043141 - Gm42654 lincRNA lincRNA MGP_CASTEiJ_T0007924.1 MGP_CASTEiJ_G0006474.1 mouse_genomes_project 5 48063112 48068372 + 4930448I18Rik lincRNA lincRNA MGP_CASTEiJ_T0014397.1 MGP_CASTEiJ_G0012560.1 mouse_genomes_project 5 21344783 21345422 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001688.1 MGP_CASTEiJ_G0001611.1 mouse_genomes_project 5 108439920 108441266 - TEC TEC MGP_CASTEiJ_T0014457.1 MGP_CASTEiJ_G0012620.1 mouse_genomes_project 5 43473081 43473705 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001680.1 MGP_CASTEiJ_G0001603.1 mouse_genomes_project 5 104546076 104547382 + TEC TEC MGP_CASTEiJ_T0101609.1 MGP_CASTEiJ_G0038469.1 mouse_genomes_project 5 26755178 26755508 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0004534.1 MGP_CASTEiJ_G0003935.1 mouse_genomes_project 5 31696779 31701581 + Gm42848 antisense antisense MGP_CASTEiJ_T0001763.1 MGP_CASTEiJ_G0001685.1 mouse_genomes_project 5 126697851 126699222 + TEC TEC MGP_CASTEiJ_T0071456.1 MGP_CASTEiJ_G0028588.1 mouse_genomes_project 5 33107236 33125183 - MGP_CASTEiJ_P0071456 Trmt44 protein_coding protein_coding MGP_CASTEiJ_T0071457.1 MGP_CASTEiJ_G0028588.1 mouse_genomes_project 5 33122649 33125164 - Trmt44 protein_coding retained_intron MGP_CASTEiJ_T0071458.1 MGP_CASTEiJ_G0028588.1 mouse_genomes_project 5 33122901 33124787 - MGP_CASTEiJ_P0071458 Trmt44 protein_coding protein_coding MGP_CASTEiJ_T0008047.1 MGP_CASTEiJ_G0006571.1 mouse_genomes_project 5 106888361 106901942 + Gm42914 lincRNA lincRNA MGP_CASTEiJ_T0007968.1 MGP_CASTEiJ_G0006510.1 mouse_genomes_project 5 74519489 74531100 - Gm42800 lincRNA lincRNA MGP_CASTEiJ_T0101144.1 MGP_CASTEiJ_G0038057.1 mouse_genomes_project 5 132305864 132305999 + Gm23245 snoRNA snoRNA MGP_CASTEiJ_T0001454.1 MGP_CASTEiJ_G0001380.1 mouse_genomes_project 5 32938222 32938677 + TEC TEC MGP_CASTEiJ_T0071439.1 MGP_CASTEiJ_G0028583.1 mouse_genomes_project 5 32567840 32591835 + MGP_CASTEiJ_P0071439 Dok7 protein_coding protein_coding MGP_CASTEiJ_T0071440.1 MGP_CASTEiJ_G0028583.1 mouse_genomes_project 5 32567936 32591835 + MGP_CASTEiJ_P0071440 Dok7 protein_coding protein_coding MGP_CASTEiJ_T0071441.1 MGP_CASTEiJ_G0028583.1 mouse_genomes_project 5 32567962 32577325 + MGP_CASTEiJ_P0071441 Dok7 protein_coding protein_coding MGP_CASTEiJ_T0071442.1 MGP_CASTEiJ_G0028583.1 mouse_genomes_project 5 32568151 32598669 + MGP_CASTEiJ_P0071442 Dok7 protein_coding protein_coding MGP_CASTEiJ_T0071443.1 MGP_CASTEiJ_G0028583.1 mouse_genomes_project 5 32585783 32591835 + Dok7 protein_coding retained_intron MGP_CASTEiJ_T0001590.1 MGP_CASTEiJ_G0001514.1 mouse_genomes_project 5 64967985 64970970 + TEC TEC MGP_CASTEiJ_T0101141.1 MGP_CASTEiJ_G0038054.1 mouse_genomes_project 5 111544004 111544137 - Gm26079 snoRNA snoRNA MGP_CASTEiJ_T0072841.1 MGP_CASTEiJ_G0028859.1 mouse_genomes_project 5 92536994 92539234 - Cxcl10 protein_coding retained_intron MGP_CASTEiJ_T0072842.1 MGP_CASTEiJ_G0028859.1 mouse_genomes_project 5 92536994 92539249 - MGP_CASTEiJ_P0072842 Cxcl10 protein_coding protein_coding MGP_CASTEiJ_T0072843.1 MGP_CASTEiJ_G0028859.1 mouse_genomes_project 5 92537161 92539256 - MGP_CASTEiJ_P0072843 Cxcl10 protein_coding protein_coding MGP_CASTEiJ_T0072844.1 MGP_CASTEiJ_G0028859.1 mouse_genomes_project 5 92538354 92539249 - Cxcl10 protein_coding retained_intron MGP_CASTEiJ_T0074906.1 MGP_CASTEiJ_G0029250.1 mouse_genomes_project 5 132907519 133423555 + MGP_CASTEiJ_P0074906 Caln1 protein_coding protein_coding MGP_CASTEiJ_T0074909.1 MGP_CASTEiJ_G0029250.1 mouse_genomes_project 5 132923229 133054699 + MGP_CASTEiJ_P0074909 Caln1 protein_coding protein_coding MGP_CASTEiJ_T0074910.1 MGP_CASTEiJ_G0029250.1 mouse_genomes_project 5 132989984 133180892 + MGP_CASTEiJ_P0074910 Caln1 protein_coding protein_coding MGP_CASTEiJ_T0074911.1 MGP_CASTEiJ_G0029250.1 mouse_genomes_project 5 132990547 133424015 + MGP_CASTEiJ_P0074911 Caln1 protein_coding protein_coding MGP_CASTEiJ_T0074912.1 MGP_CASTEiJ_G0029250.1 mouse_genomes_project 5 132991338 133430744 + MGP_CASTEiJ_P0074912 Caln1 protein_coding protein_coding MGP_CASTEiJ_T0070862.1 MGP_CASTEiJ_G0028501.1 mouse_genomes_project 5 27845780 27883639 + MGP_CASTEiJ_P0070862 Kcnk3 protein_coding protein_coding MGP_CASTEiJ_T0070863.1 MGP_CASTEiJ_G0028501.1 mouse_genomes_project 5 27879848 27880708 + Kcnk3 protein_coding processed_transcript MGP_CASTEiJ_T0102346.1 MGP_CASTEiJ_G0039071.1 mouse_genomes_project 5 86726417 86729253 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0075607.1 MGP_CASTEiJ_G0029377.1 mouse_genomes_project 5 142336753 142464096 - MGP_CASTEiJ_P0075607 Prkar1b protein_coding protein_coding MGP_CASTEiJ_T0075608.1 MGP_CASTEiJ_G0029377.1 mouse_genomes_project 5 142336755 142464722 - MGP_CASTEiJ_P0075608 Prkar1b protein_coding protein_coding MGP_CASTEiJ_T0075609.1 MGP_CASTEiJ_G0029377.1 mouse_genomes_project 5 142336764 142443836 - MGP_CASTEiJ_P0075609 Prkar1b protein_coding protein_coding MGP_CASTEiJ_T0075610.1 MGP_CASTEiJ_G0029377.1 mouse_genomes_project 5 142337931 142464028 - MGP_CASTEiJ_P0075610 Prkar1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0075611.1 MGP_CASTEiJ_G0029377.1 mouse_genomes_project 5 142338113 142343253 - Prkar1b protein_coding processed_transcript MGP_CASTEiJ_T0075612.1 MGP_CASTEiJ_G0029377.1 mouse_genomes_project 5 142364360 142459106 - MGP_CASTEiJ_P0075612 Prkar1b protein_coding protein_coding MGP_CASTEiJ_T0075613.1 MGP_CASTEiJ_G0029377.1 mouse_genomes_project 5 142374416 142464496 - MGP_CASTEiJ_P0075613 Prkar1b protein_coding protein_coding MGP_CASTEiJ_T0075614.1 MGP_CASTEiJ_G0029377.1 mouse_genomes_project 5 142389514 142442441 - MGP_CASTEiJ_P0075614 Prkar1b protein_coding protein_coding MGP_CASTEiJ_T0075615.1 MGP_CASTEiJ_G0029377.1 mouse_genomes_project 5 142438273 142464910 - MGP_CASTEiJ_P0075615 Prkar1b protein_coding protein_coding MGP_CASTEiJ_T0075616.1 MGP_CASTEiJ_G0029377.1 mouse_genomes_project 5 142438300 142486537 - MGP_CASTEiJ_P0075616 Prkar1b protein_coding protein_coding MGP_CASTEiJ_T0075617.1 MGP_CASTEiJ_G0029377.1 mouse_genomes_project 5 142438366 142464719 - MGP_CASTEiJ_P0075617 Prkar1b protein_coding protein_coding MGP_CASTEiJ_T0075618.1 MGP_CASTEiJ_G0029377.1 mouse_genomes_project 5 142484600 142486493 - Prkar1b protein_coding processed_transcript MGP_CASTEiJ_T0007916.1 MGP_CASTEiJ_G0006467.1 mouse_genomes_project 5 41174385 41178536 + Gm43021 lincRNA lincRNA MGP_CASTEiJ_T0008144.1 MGP_CASTEiJ_G0006635.1 mouse_genomes_project 5 122397749 122398457 + Gm15749 lincRNA lincRNA MGP_CASTEiJ_T0001569.1 MGP_CASTEiJ_G0001493.1 mouse_genomes_project 5 63595247 63597544 + TEC TEC MGP_CASTEiJ_T0014412.1 MGP_CASTEiJ_G0012575.1 mouse_genomes_project 5 24999298 24999779 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075660.1 MGP_CASTEiJ_G0029383.1 mouse_genomes_project 5 142701345 142704765 + Cyp2w1 protein_coding retained_intron MGP_CASTEiJ_T0075661.1 MGP_CASTEiJ_G0029383.1 mouse_genomes_project 5 142701345 142707178 + MGP_CASTEiJ_P0075661 Cyp2w1 protein_coding protein_coding MGP_CASTEiJ_T0075662.1 MGP_CASTEiJ_G0029383.1 mouse_genomes_project 5 142704718 142706812 + MGP_CASTEiJ_P0075662 Cyp2w1 protein_coding protein_coding MGP_CASTEiJ_T0014448.1 MGP_CASTEiJ_G0012611.1 mouse_genomes_project 5 38372533 38372891 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017377.1 MGP_CASTEiJ_G0014907.1 mouse_genomes_project 5 22284420 22287943 + 2900005J15Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017378.1 MGP_CASTEiJ_G0014907.1 mouse_genomes_project 5 22284894 22295045 + 2900005J15Rik processed_transcript processed_transcript MGP_CASTEiJ_T0014695.1 MGP_CASTEiJ_G0012858.1 mouse_genomes_project 5 154460096 154461628 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072227.1 MGP_CASTEiJ_G0028717.1 mouse_genomes_project 5 70561000 71031308 + MGP_CASTEiJ_P0072227 Gabrb1 protein_coding protein_coding MGP_CASTEiJ_T0072228.1 MGP_CASTEiJ_G0028717.1 mouse_genomes_project 5 70609886 71064970 + MGP_CASTEiJ_P0072228 Gabrb1 protein_coding protein_coding MGP_CASTEiJ_T0071412.1 MGP_CASTEiJ_G0028580.1 mouse_genomes_project 5 32413160 32422935 + Msantd1 protein_coding processed_transcript MGP_CASTEiJ_T0071413.1 MGP_CASTEiJ_G0028580.1 mouse_genomes_project 5 32420207 32432097 + MGP_CASTEiJ_P0071413 Msantd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071414.1 MGP_CASTEiJ_G0028580.1 mouse_genomes_project 5 32421034 32428946 + MGP_CASTEiJ_P0071414 Msantd1 protein_coding protein_coding MGP_CASTEiJ_T0071415.1 MGP_CASTEiJ_G0028580.1 mouse_genomes_project 5 32422657 32428797 + MGP_CASTEiJ_P0071415 Msantd1 protein_coding protein_coding MGP_CASTEiJ_T0001597.1 MGP_CASTEiJ_G0001521.1 mouse_genomes_project 5 65387835 65390912 - TEC TEC MGP_CASTEiJ_T0008252.1 MGP_CASTEiJ_G0006709.1 mouse_genomes_project 5 153617759 153624410 + 2310047D07Rik lincRNA lincRNA MGP_CASTEiJ_T0008254.1 MGP_CASTEiJ_G0006709.1 mouse_genomes_project 5 153623577 153624392 + 2310047D07Rik lincRNA lincRNA MGP_CASTEiJ_T0071500.1 MGP_CASTEiJ_G0028593.1 mouse_genomes_project 5 33455609 33576245 + MGP_CASTEiJ_P0071500 Afap1 protein_coding protein_coding MGP_CASTEiJ_T0071501.1 MGP_CASTEiJ_G0028593.1 mouse_genomes_project 5 33455687 33572055 + MGP_CASTEiJ_P0071501 Afap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071502.1 MGP_CASTEiJ_G0028593.1 mouse_genomes_project 5 33455755 33470748 + Afap1 protein_coding processed_transcript MGP_CASTEiJ_T0071503.1 MGP_CASTEiJ_G0028593.1 mouse_genomes_project 5 33478168 33568354 + MGP_CASTEiJ_P0071503 Afap1 protein_coding protein_coding MGP_CASTEiJ_T0071504.1 MGP_CASTEiJ_G0028593.1 mouse_genomes_project 5 33557026 33561250 + Afap1 protein_coding retained_intron MGP_CASTEiJ_T0010400.1 MGP_CASTEiJ_G0008588.1 mouse_genomes_project 5 104137353 104137414 + Mir5619 miRNA miRNA MGP_CASTEiJ_T0070901.1 MGP_CASTEiJ_G0028507.1 mouse_genomes_project 5 28153156 28155671 + MGP_CASTEiJ_P0070901 Agbl5 protein_coding protein_coding MGP_CASTEiJ_T0070902.1 MGP_CASTEiJ_G0028507.1 mouse_genomes_project 5 28153314 28161099 + MGP_CASTEiJ_P0070902 Agbl5 protein_coding protein_coding MGP_CASTEiJ_T0070903.1 MGP_CASTEiJ_G0028507.1 mouse_genomes_project 5 28153397 28171973 + MGP_CASTEiJ_P0070903 Agbl5 protein_coding protein_coding MGP_CASTEiJ_T0070904.1 MGP_CASTEiJ_G0028507.1 mouse_genomes_project 5 28153403 28158294 + Agbl5 protein_coding retained_intron MGP_CASTEiJ_T0070905.1 MGP_CASTEiJ_G0028507.1 mouse_genomes_project 5 28153418 28171029 + Agbl5 protein_coding retained_intron MGP_CASTEiJ_T0070906.1 MGP_CASTEiJ_G0028507.1 mouse_genomes_project 5 28153431 28160494 + Agbl5 protein_coding retained_intron MGP_CASTEiJ_T0070907.1 MGP_CASTEiJ_G0028507.1 mouse_genomes_project 5 28153431 28171028 + MGP_CASTEiJ_P0070907 Agbl5 protein_coding protein_coding MGP_CASTEiJ_T0070908.1 MGP_CASTEiJ_G0028507.1 mouse_genomes_project 5 28153436 28167840 + MGP_CASTEiJ_P0070908 Agbl5 protein_coding protein_coding MGP_CASTEiJ_T0070909.1 MGP_CASTEiJ_G0028507.1 mouse_genomes_project 5 28153463 28171028 + MGP_CASTEiJ_P0070909 Agbl5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070910.1 MGP_CASTEiJ_G0028507.1 mouse_genomes_project 5 28153468 28171028 + MGP_CASTEiJ_P0070910 Agbl5 protein_coding protein_coding MGP_CASTEiJ_T0070911.1 MGP_CASTEiJ_G0028507.1 mouse_genomes_project 5 28153468 28167840 + MGP_CASTEiJ_P0070911 Agbl5 protein_coding protein_coding MGP_CASTEiJ_T0070912.1 MGP_CASTEiJ_G0028507.1 mouse_genomes_project 5 28153787 28156333 + MGP_CASTEiJ_P0070912 Agbl5 protein_coding protein_coding MGP_CASTEiJ_T0070913.1 MGP_CASTEiJ_G0028507.1 mouse_genomes_project 5 28154743 28156910 + Agbl5 protein_coding processed_transcript MGP_CASTEiJ_T0070914.1 MGP_CASTEiJ_G0028507.1 mouse_genomes_project 5 28158664 28160504 + Agbl5 protein_coding retained_intron MGP_CASTEiJ_T0070916.1 MGP_CASTEiJ_G0028507.1 mouse_genomes_project 5 28159599 28160525 + Agbl5 protein_coding retained_intron MGP_CASTEiJ_T0070917.1 MGP_CASTEiJ_G0028507.1 mouse_genomes_project 5 28160342 28170259 + MGP_CASTEiJ_P0070917 Agbl5 protein_coding protein_coding MGP_CASTEiJ_T0075939.1 MGP_CASTEiJ_G0029449.1 mouse_genomes_project 5 147923068 147952900 - MGP_CASTEiJ_P0075939 Tecpr1 protein_coding protein_coding MGP_CASTEiJ_T0075940.1 MGP_CASTEiJ_G0029449.1 mouse_genomes_project 5 147923956 147952832 - Tecpr1 protein_coding retained_intron MGP_CASTEiJ_T0075941.1 MGP_CASTEiJ_G0029449.1 mouse_genomes_project 5 147924732 147926783 - Tecpr1 protein_coding retained_intron MGP_CASTEiJ_T0075942.1 MGP_CASTEiJ_G0029449.1 mouse_genomes_project 5 147924737 147927600 - Tecpr1 protein_coding retained_intron MGP_CASTEiJ_T0075943.1 MGP_CASTEiJ_G0029449.1 mouse_genomes_project 5 147927172 147928399 - Tecpr1 protein_coding retained_intron MGP_CASTEiJ_T0075944.1 MGP_CASTEiJ_G0029449.1 mouse_genomes_project 5 147929100 147932214 - Tecpr1 protein_coding retained_intron MGP_CASTEiJ_T0075945.1 MGP_CASTEiJ_G0029449.1 mouse_genomes_project 5 147937311 147938469 - Tecpr1 protein_coding processed_transcript MGP_CASTEiJ_T0075946.1 MGP_CASTEiJ_G0029449.1 mouse_genomes_project 5 147939080 147945049 - Tecpr1 protein_coding retained_intron MGP_CASTEiJ_T0075947.1 MGP_CASTEiJ_G0029449.1 mouse_genomes_project 5 147939088 147952837 - Tecpr1 protein_coding retained_intron MGP_CASTEiJ_T0075948.1 MGP_CASTEiJ_G0029449.1 mouse_genomes_project 5 147941810 147952891 - Tecpr1 protein_coding retained_intron MGP_CASTEiJ_T0075949.1 MGP_CASTEiJ_G0029449.1 mouse_genomes_project 5 147947601 147952843 - Tecpr1 protein_coding retained_intron MGP_CASTEiJ_T0075950.1 MGP_CASTEiJ_G0029449.1 mouse_genomes_project 5 147949680 147952808 - Tecpr1 protein_coding retained_intron MGP_CASTEiJ_T0001800.1 MGP_CASTEiJ_G0001722.1 mouse_genomes_project 5 134872570 134874206 - TEC TEC MGP_CASTEiJ_T0071304.1 MGP_CASTEiJ_G0028566.1 mouse_genomes_project 5 31473537 31479921 - Poln protein_coding processed_transcript MGP_CASTEiJ_T0071305.1 MGP_CASTEiJ_G0028566.1 mouse_genomes_project 5 31473547 31512616 - Poln protein_coding processed_transcript MGP_CASTEiJ_T0071306.1 MGP_CASTEiJ_G0028566.1 mouse_genomes_project 5 31473556 31639480 - MGP_CASTEiJ_P0071306 Poln protein_coding protein_coding MGP_CASTEiJ_T0071307.1 MGP_CASTEiJ_G0028566.1 mouse_genomes_project 5 31473556 31639480 - MGP_CASTEiJ_P0071307 Poln protein_coding protein_coding MGP_CASTEiJ_T0071308.1 MGP_CASTEiJ_G0028566.1 mouse_genomes_project 5 31473641 31639458 - MGP_CASTEiJ_P0071308 Poln protein_coding protein_coding MGP_CASTEiJ_T0071309.1 MGP_CASTEiJ_G0028566.1 mouse_genomes_project 5 31480711 31568122 - Poln protein_coding processed_transcript MGP_CASTEiJ_T0071310.1 MGP_CASTEiJ_G0028566.1 mouse_genomes_project 5 31500605 31568062 - Poln protein_coding processed_transcript MGP_CASTEiJ_T0071311.1 MGP_CASTEiJ_G0028566.1 mouse_genomes_project 5 31563979 31568138 - Poln protein_coding retained_intron MGP_CASTEiJ_T0004568.1 MGP_CASTEiJ_G0003961.1 mouse_genomes_project 5 62468736 62469795 + Gm15819 antisense antisense MGP_CASTEiJ_T0101118.1 MGP_CASTEiJ_G0038031.1 mouse_genomes_project 5 61001488 61001620 - Gm24079 snoRNA snoRNA MGP_CASTEiJ_T0101784.1 MGP_CASTEiJ_G0038564.1 mouse_genomes_project 5 71516485 71520317 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0075363.1 MGP_CASTEiJ_G0029327.1 mouse_genomes_project 5 140320055 140324763 - MGP_CASTEiJ_P0075363 Trip6 protein_coding protein_coding MGP_CASTEiJ_T0075364.1 MGP_CASTEiJ_G0029327.1 mouse_genomes_project 5 140323313 140324549 - MGP_CASTEiJ_P0075364 Trip6 protein_coding protein_coding MGP_CASTEiJ_T0075365.1 MGP_CASTEiJ_G0029327.1 mouse_genomes_project 5 140323340 140324523 - Trip6 protein_coding retained_intron MGP_CASTEiJ_T0075366.1 MGP_CASTEiJ_G0029327.1 mouse_genomes_project 5 140323719 140324566 - Trip6 protein_coding processed_transcript MGP_CASTEiJ_T0008079.1 MGP_CASTEiJ_G0006591.1 mouse_genomes_project 5 112643604 112673341 - E130006D01Rik lincRNA lincRNA MGP_CASTEiJ_T0008080.1 MGP_CASTEiJ_G0006591.1 mouse_genomes_project 5 112643623 112673363 - E130006D01Rik lincRNA lincRNA MGP_CASTEiJ_T0008081.1 MGP_CASTEiJ_G0006591.1 mouse_genomes_project 5 112643730 112673338 - E130006D01Rik lincRNA lincRNA MGP_CASTEiJ_T0001774.1 MGP_CASTEiJ_G0001696.1 mouse_genomes_project 5 131144787 131145456 - TEC TEC MGP_CASTEiJ_T0014656.1 MGP_CASTEiJ_G0012819.1 mouse_genomes_project 5 141176545 141176747 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072697.1 MGP_CASTEiJ_G0028821.1 mouse_genomes_project 5 88793142 88826324 + Mob1b protein_coding retained_intron MGP_CASTEiJ_T0072698.1 MGP_CASTEiJ_G0028821.1 mouse_genomes_project 5 88793142 88841592 + MGP_CASTEiJ_P0072698 Mob1b protein_coding protein_coding MGP_CASTEiJ_T0072699.1 MGP_CASTEiJ_G0028821.1 mouse_genomes_project 5 88793158 88835038 + MGP_CASTEiJ_P0072699 Mob1b protein_coding protein_coding MGP_CASTEiJ_T0072700.1 MGP_CASTEiJ_G0028821.1 mouse_genomes_project 5 88793266 88827040 + Mob1b protein_coding retained_intron MGP_CASTEiJ_T0001742.1 MGP_CASTEiJ_G0001665.1 mouse_genomes_project 5 123688110 123692660 + TEC TEC MGP_CASTEiJ_T0001712.1 MGP_CASTEiJ_G0001635.1 mouse_genomes_project 5 116241727 116243041 + TEC TEC MGP_CASTEiJ_T0070400.1 MGP_CASTEiJ_G0028411.1 mouse_genomes_project 5 12723811 13204816 + MGP_CASTEiJ_P0070400 Cacna2d1 protein_coding protein_coding MGP_CASTEiJ_T0070401.1 MGP_CASTEiJ_G0028411.1 mouse_genomes_project 5 12723908 13201380 + MGP_CASTEiJ_P0070401 Cacna2d1 protein_coding protein_coding MGP_CASTEiJ_T0070402.1 MGP_CASTEiJ_G0028411.1 mouse_genomes_project 5 12723908 13201362 + MGP_CASTEiJ_P0070402 Cacna2d1 protein_coding protein_coding MGP_CASTEiJ_T0070403.1 MGP_CASTEiJ_G0028411.1 mouse_genomes_project 5 12723908 13201380 + MGP_CASTEiJ_P0070403 Cacna2d1 protein_coding protein_coding MGP_CASTEiJ_T0070404.1 MGP_CASTEiJ_G0028411.1 mouse_genomes_project 5 12723908 13204809 + MGP_CASTEiJ_P0070404 Cacna2d1 protein_coding protein_coding MGP_CASTEiJ_T0070405.1 MGP_CASTEiJ_G0028411.1 mouse_genomes_project 5 12723908 13201380 + MGP_CASTEiJ_P0070405 Cacna2d1 protein_coding protein_coding MGP_CASTEiJ_T0070406.1 MGP_CASTEiJ_G0028411.1 mouse_genomes_project 5 12723949 13201038 + MGP_CASTEiJ_P0070406 Cacna2d1 protein_coding protein_coding MGP_CASTEiJ_T0070407.1 MGP_CASTEiJ_G0028411.1 mouse_genomes_project 5 12724031 12891827 + MGP_CASTEiJ_P0070407 Cacna2d1 protein_coding protein_coding MGP_CASTEiJ_T0070408.1 MGP_CASTEiJ_G0028411.1 mouse_genomes_project 5 12830392 13097123 + Cacna2d1 protein_coding retained_intron MGP_CASTEiJ_T0070409.1 MGP_CASTEiJ_G0028411.1 mouse_genomes_project 5 13149742 13153281 + Cacna2d1 protein_coding retained_intron MGP_CASTEiJ_T0070410.1 MGP_CASTEiJ_G0028411.1 mouse_genomes_project 5 13149887 13164214 + Cacna2d1 protein_coding retained_intron MGP_CASTEiJ_T0070411.1 MGP_CASTEiJ_G0028411.1 mouse_genomes_project 5 13190421 13191353 + Cacna2d1 protein_coding retained_intron MGP_CASTEiJ_T0014569.1 MGP_CASTEiJ_G0012732.1 mouse_genomes_project 5 97941982 97942978 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014636.1 MGP_CASTEiJ_G0012799.1 mouse_genomes_project 5 125566790 125567168 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008140.1 MGP_CASTEiJ_G0006632.1 mouse_genomes_project 5 121583028 121587367 + lincRNA lincRNA MGP_CASTEiJ_T0014389.1 MGP_CASTEiJ_G0012552.1 mouse_genomes_project 5 20025043 20025654 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098949.1 MGP_CASTEiJ_G0035873.1 mouse_genomes_project 5 424544 425271 + Gm43017 sense_intronic sense_intronic MGP_CASTEiJ_T0072189.1 MGP_CASTEiJ_G0028709.1 mouse_genomes_project 5 67961818 68219664 - MGP_CASTEiJ_P0072189 Kctd8 protein_coding protein_coding MGP_CASTEiJ_T0072190.1 MGP_CASTEiJ_G0028709.1 mouse_genomes_project 5 68166769 68219662 - MGP_CASTEiJ_P0072190 Kctd8 protein_coding protein_coding MGP_CASTEiJ_T0011261.1 MGP_CASTEiJ_G0009449.1 mouse_genomes_project 5 26940684 26941013 + Gm26346 misc_RNA misc_RNA MGP_CASTEiJ_T0075063.1 MGP_CASTEiJ_G0029270.1 mouse_genomes_project 5 137789691 137791499 - MGP_CASTEiJ_P0075063 Cldn4 protein_coding protein_coding MGP_CASTEiJ_T0102364.1 MGP_CASTEiJ_G0039089.1 mouse_genomes_project 5 148853136 148853976 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0001578.1 MGP_CASTEiJ_G0001502.1 mouse_genomes_project 5 64288247 64290989 + TEC TEC MGP_CASTEiJ_T0014689.1 MGP_CASTEiJ_G0012852.1 mouse_genomes_project 5 152062698 152063191 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074213.1 MGP_CASTEiJ_G0029136.1 mouse_genomes_project 5 123510563 123537324 - MGP_CASTEiJ_P0074213 Acad12 protein_coding protein_coding MGP_CASTEiJ_T0074214.1 MGP_CASTEiJ_G0029136.1 mouse_genomes_project 5 123510697 123511827 - Acad12 protein_coding processed_transcript MGP_CASTEiJ_T0001822.1 MGP_CASTEiJ_G0001743.1 mouse_genomes_project 5 141919589 141921059 + TEC TEC MGP_CASTEiJ_T0014350.1 MGP_CASTEiJ_G0012513.1 mouse_genomes_project 5 4292778 4293364 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072085.1 MGP_CASTEiJ_G0028695.1 mouse_genomes_project 5 64746519 64836120 - MGP_CASTEiJ_P0072085 Rbm47 protein_coding protein_coding MGP_CASTEiJ_T0072086.1 MGP_CASTEiJ_G0028695.1 mouse_genomes_project 5 64746519 64920047 - MGP_CASTEiJ_P0072086 Rbm47 protein_coding protein_coding MGP_CASTEiJ_T0072087.1 MGP_CASTEiJ_G0028695.1 mouse_genomes_project 5 64746526 64815712 - MGP_CASTEiJ_P0072087 Rbm47 protein_coding protein_coding MGP_CASTEiJ_T0072088.1 MGP_CASTEiJ_G0028695.1 mouse_genomes_project 5 64746527 64896526 - MGP_CASTEiJ_P0072088 Rbm47 protein_coding protein_coding MGP_CASTEiJ_T0072089.1 MGP_CASTEiJ_G0028695.1 mouse_genomes_project 5 64748546 64895678 - MGP_CASTEiJ_P0072089 Rbm47 protein_coding protein_coding MGP_CASTEiJ_T0072090.1 MGP_CASTEiJ_G0028695.1 mouse_genomes_project 5 64748926 64815811 - MGP_CASTEiJ_P0072090 Rbm47 protein_coding protein_coding MGP_CASTEiJ_T0072091.1 MGP_CASTEiJ_G0028695.1 mouse_genomes_project 5 64749077 64784524 - MGP_CASTEiJ_P0072091 Rbm47 protein_coding protein_coding MGP_CASTEiJ_T0072092.1 MGP_CASTEiJ_G0028695.1 mouse_genomes_project 5 64756834 64895556 - Rbm47 protein_coding retained_intron MGP_CASTEiJ_T0072093.1 MGP_CASTEiJ_G0028695.1 mouse_genomes_project 5 64758075 64785342 - MGP_CASTEiJ_P0072093 Rbm47 protein_coding protein_coding MGP_CASTEiJ_T0072094.1 MGP_CASTEiJ_G0028695.1 mouse_genomes_project 5 64758318 64816700 - Rbm47 protein_coding processed_transcript MGP_CASTEiJ_T0072095.1 MGP_CASTEiJ_G0028695.1 mouse_genomes_project 5 64758510 64815696 - MGP_CASTEiJ_P0072095 Rbm47 protein_coding protein_coding MGP_CASTEiJ_T0072096.1 MGP_CASTEiJ_G0028695.1 mouse_genomes_project 5 64776942 64896390 - Rbm47 protein_coding processed_transcript MGP_CASTEiJ_T0072097.1 MGP_CASTEiJ_G0028695.1 mouse_genomes_project 5 64777057 64896384 - Rbm47 protein_coding processed_transcript MGP_CASTEiJ_T0014626.1 MGP_CASTEiJ_G0012789.1 mouse_genomes_project 5 122389606 122389817 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011273.1 MGP_CASTEiJ_G0009461.1 mouse_genomes_project 5 110361120 110361192 + Gm28000 misc_RNA misc_RNA MGP_CASTEiJ_T0014622.1 MGP_CASTEiJ_G0012785.1 mouse_genomes_project 5 116763292 116763793 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001834.1 MGP_CASTEiJ_G0001755.1 mouse_genomes_project 5 147526064 147531126 + TEC TEC MGP_CASTEiJ_T0101132.1 MGP_CASTEiJ_G0038045.1 mouse_genomes_project 5 98351339 98351470 + Gm24279 snoRNA snoRNA MGP_CASTEiJ_T0072429.1 MGP_CASTEiJ_G0028753.1 mouse_genomes_project 5 75773735 75814436 + MGP_CASTEiJ_P0072429 Exoc1 protein_coding protein_coding MGP_CASTEiJ_T0072430.1 MGP_CASTEiJ_G0028753.1 mouse_genomes_project 5 75773747 75814427 + MGP_CASTEiJ_P0072430 Exoc1 protein_coding protein_coding MGP_CASTEiJ_T0072431.1 MGP_CASTEiJ_G0028753.1 mouse_genomes_project 5 75773752 75784146 + Exoc1 protein_coding retained_intron MGP_CASTEiJ_T0072432.1 MGP_CASTEiJ_G0028753.1 mouse_genomes_project 5 75773768 75806065 + Exoc1 protein_coding processed_transcript MGP_CASTEiJ_T0072433.1 MGP_CASTEiJ_G0028753.1 mouse_genomes_project 5 75773782 75785520 + Exoc1 protein_coding retained_intron MGP_CASTEiJ_T0072434.1 MGP_CASTEiJ_G0028753.1 mouse_genomes_project 5 75773782 75814429 + MGP_CASTEiJ_P0072434 Exoc1 protein_coding protein_coding MGP_CASTEiJ_T0072435.1 MGP_CASTEiJ_G0028753.1 mouse_genomes_project 5 75786627 75793993 + Exoc1 protein_coding retained_intron MGP_CASTEiJ_T0072436.1 MGP_CASTEiJ_G0028753.1 mouse_genomes_project 5 75797140 75799912 + Exoc1 protein_coding retained_intron MGP_CASTEiJ_T0072437.1 MGP_CASTEiJ_G0028753.1 mouse_genomes_project 5 75804631 75811418 + Exoc1 protein_coding retained_intron MGP_CASTEiJ_T0072438.1 MGP_CASTEiJ_G0028753.1 mouse_genomes_project 5 75805498 75812231 + Exoc1 protein_coding retained_intron MGP_CASTEiJ_T0072439.1 MGP_CASTEiJ_G0028753.1 mouse_genomes_project 5 75805636 75811182 + MGP_CASTEiJ_P0072439 Exoc1 protein_coding protein_coding MGP_CASTEiJ_T0072440.1 MGP_CASTEiJ_G0028753.1 mouse_genomes_project 5 75812096 75814131 + Exoc1 protein_coding retained_intron MGP_CASTEiJ_T0014690.1 MGP_CASTEiJ_G0012853.1 mouse_genomes_project 5 152111990 152112465 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099888.1 MGP_CASTEiJ_G0036801.1 mouse_genomes_project 5 71339309 71339416 - Gm23712 snRNA snRNA MGP_CASTEiJ_T0102360.1 MGP_CASTEiJ_G0039085.1 mouse_genomes_project 5 140000621 140002538 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0001625.1 MGP_CASTEiJ_G0001548.1 mouse_genomes_project 5 72173180 72177701 - TEC TEC MGP_CASTEiJ_T0098957.1 MGP_CASTEiJ_G0035881.1 mouse_genomes_project 5 20743859 20744667 - Gm43566 sense_intronic sense_intronic MGP_CASTEiJ_T0004755.1 MGP_CASTEiJ_G0004095.1 mouse_genomes_project 5 151608091 151610484 + Gm26597 antisense antisense MGP_CASTEiJ_T0004739.1 MGP_CASTEiJ_G0004084.1 mouse_genomes_project 5 142553810 142554675 - 4930520M14Rik antisense antisense MGP_CASTEiJ_T0014532.1 MGP_CASTEiJ_G0012695.1 mouse_genomes_project 5 79011147 79012258 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072321.1 MGP_CASTEiJ_G0028733.1 mouse_genomes_project 5 72415668 72466678 + MGP_CASTEiJ_P0072321 Cwh43 protein_coding protein_coding MGP_CASTEiJ_T0072322.1 MGP_CASTEiJ_G0028733.1 mouse_genomes_project 5 72415820 72466688 + MGP_CASTEiJ_P0072322 Cwh43 protein_coding protein_coding MGP_CASTEiJ_T0072323.1 MGP_CASTEiJ_G0028733.1 mouse_genomes_project 5 72415955 72466349 + MGP_CASTEiJ_P0072323 Cwh43 protein_coding unknown_likely_coding MGP_CASTEiJ_T0072324.1 MGP_CASTEiJ_G0028733.1 mouse_genomes_project 5 72441198 72445362 + Cwh43 protein_coding retained_intron MGP_CASTEiJ_T0014691.1 MGP_CASTEiJ_G0012854.1 mouse_genomes_project 5 152461219 152462728 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072759.1 MGP_CASTEiJ_G0028837.1 mouse_genomes_project 5 90890751 90891699 + MGP_CASTEiJ_P0072759 Pf4 protein_coding protein_coding MGP_CASTEiJ_T0072760.1 MGP_CASTEiJ_G0028837.1 mouse_genomes_project 5 90890829 90891472 + MGP_CASTEiJ_P0072760 Pf4 protein_coding protein_coding MGP_CASTEiJ_T0072761.1 MGP_CASTEiJ_G0028837.1 mouse_genomes_project 5 90891206 90891694 + Pf4 protein_coding retained_intron MGP_CASTEiJ_T0001803.1 MGP_CASTEiJ_G0001725.1 mouse_genomes_project 5 135116773 135118046 - TEC TEC MGP_CASTEiJ_T0004731.1 MGP_CASTEiJ_G0004081.1 mouse_genomes_project 5 140902111 140902558 + Gm43495 antisense antisense MGP_CASTEiJ_T0070477.1 MGP_CASTEiJ_G0028425.1 mouse_genomes_project 5 18443627 18509866 + MGP_CASTEiJ_P0070477 Fam185a protein_coding protein_coding MGP_CASTEiJ_T0070478.1 MGP_CASTEiJ_G0028425.1 mouse_genomes_project 5 18443670 18449809 + Fam185a protein_coding retained_intron MGP_CASTEiJ_T0070479.1 MGP_CASTEiJ_G0028425.1 mouse_genomes_project 5 18443837 18509794 + MGP_CASTEiJ_P0070479 Fam185a protein_coding unknown_likely_coding MGP_CASTEiJ_T0070480.1 MGP_CASTEiJ_G0028425.1 mouse_genomes_project 5 18449962 18508545 + Fam185a protein_coding processed_transcript MGP_CASTEiJ_T0070708.1 MGP_CASTEiJ_G0028468.1 mouse_genomes_project 5 22416850 22420853 + Galnt11 protein_coding processed_transcript MGP_CASTEiJ_T0070710.1 MGP_CASTEiJ_G0028468.1 mouse_genomes_project 5 22417833 22456593 + MGP_CASTEiJ_P0070710 Galnt11 protein_coding protein_coding MGP_CASTEiJ_T0070711.1 MGP_CASTEiJ_G0028468.1 mouse_genomes_project 5 22433351 22456592 + MGP_CASTEiJ_P0070711 Galnt11 protein_coding protein_coding MGP_CASTEiJ_T0070712.1 MGP_CASTEiJ_G0028468.1 mouse_genomes_project 5 22433762 22435746 + MGP_CASTEiJ_P0070712 Galnt11 protein_coding protein_coding MGP_CASTEiJ_T0070713.1 MGP_CASTEiJ_G0028468.1 mouse_genomes_project 5 22434343 22456593 + MGP_CASTEiJ_P0070713 Galnt11 protein_coding protein_coding MGP_CASTEiJ_T0073550.1 MGP_CASTEiJ_G0029006.1 mouse_genomes_project 5 113205833 113219844 + MGP_CASTEiJ_P0073550 Crybb1 protein_coding protein_coding MGP_CASTEiJ_T0073551.1 MGP_CASTEiJ_G0029006.1 mouse_genomes_project 5 113205843 113219847 + MGP_CASTEiJ_P0073551 Crybb1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073552.1 MGP_CASTEiJ_G0029006.1 mouse_genomes_project 5 113205863 113219716 + MGP_CASTEiJ_P0073552 Crybb1 protein_coding protein_coding MGP_CASTEiJ_T0073553.1 MGP_CASTEiJ_G0029006.1 mouse_genomes_project 5 113205892 113219761 + MGP_CASTEiJ_P0073553 Crybb1 protein_coding protein_coding MGP_CASTEiJ_T0074729.1 MGP_CASTEiJ_G0029212.1 mouse_genomes_project 5 127577429 127578822 - MGP_CASTEiJ_P0074729 protein_coding protein_coding MGP_CASTEiJ_T0075785.1 MGP_CASTEiJ_G0029414.1 mouse_genomes_project 5 146082112 146155700 - MGP_CASTEiJ_P0075785 Radil protein_coding protein_coding MGP_CASTEiJ_T0075786.1 MGP_CASTEiJ_G0029414.1 mouse_genomes_project 5 146082115 146155664 - Radil protein_coding retained_intron MGP_CASTEiJ_T0075787.1 MGP_CASTEiJ_G0029414.1 mouse_genomes_project 5 146082115 146149743 - MGP_CASTEiJ_P0075787 Radil protein_coding protein_coding MGP_CASTEiJ_T0075788.1 MGP_CASTEiJ_G0029414.1 mouse_genomes_project 5 146082140 146106893 - MGP_CASTEiJ_P0075788 Radil protein_coding protein_coding MGP_CASTEiJ_T0075789.1 MGP_CASTEiJ_G0029414.1 mouse_genomes_project 5 146082152 146155679 - MGP_CASTEiJ_P0075789 Radil protein_coding protein_coding MGP_CASTEiJ_T0075790.1 MGP_CASTEiJ_G0029414.1 mouse_genomes_project 5 146083756 146084843 - Radil protein_coding retained_intron MGP_CASTEiJ_T0075791.1 MGP_CASTEiJ_G0029414.1 mouse_genomes_project 5 146105357 146106728 - MGP_CASTEiJ_P0075791 Radil protein_coding protein_coding MGP_CASTEiJ_T0075793.1 MGP_CASTEiJ_G0029414.1 mouse_genomes_project 5 146148339 146155567 - MGP_CASTEiJ_P0075793 Radil protein_coding protein_coding MGP_CASTEiJ_T0075956.1 MGP_CASTEiJ_G0029452.1 mouse_genomes_project 5 148333379 148344890 + MGP_CASTEiJ_P0075956 Nptx2 protein_coding protein_coding MGP_CASTEiJ_T0008199.1 MGP_CASTEiJ_G0006665.1 mouse_genomes_project 5 135247037 135251630 + Gm42626 lincRNA lincRNA MGP_CASTEiJ_T0070476.1 MGP_CASTEiJ_G0028424.1 mouse_genomes_project 5 18391556 18398870 + MGP_CASTEiJ_P0070476 Fgl2 protein_coding protein_coding MGP_CASTEiJ_T0007919.1 MGP_CASTEiJ_G0006470.1 mouse_genomes_project 5 42649544 42666445 + Gm42750 lincRNA lincRNA MGP_CASTEiJ_T0072762.1 MGP_CASTEiJ_G0028838.1 mouse_genomes_project 5 90906017 90909307 + Cxcl3 protein_coding retained_intron MGP_CASTEiJ_T0072763.1 MGP_CASTEiJ_G0028838.1 mouse_genomes_project 5 90906017 90907804 + MGP_CASTEiJ_P0072763 Cxcl3 protein_coding protein_coding MGP_CASTEiJ_T0014376.1 MGP_CASTEiJ_G0012539.1 mouse_genomes_project 5 17811614 17811982 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098624.1 MGP_CASTEiJ_G0035555.1 mouse_genomes_project 5 153676586 153676692 - n-R5s180 rRNA rRNA MGP_CASTEiJ_T0071816.1 MGP_CASTEiJ_G0028647.1 mouse_genomes_project 5 46190601 46245045 + 5730480H06Rik protein_coding processed_transcript MGP_CASTEiJ_T0071817.1 MGP_CASTEiJ_G0028647.1 mouse_genomes_project 5 46236141 46254836 + MGP_CASTEiJ_P0071817 5730480H06Rik protein_coding protein_coding MGP_CASTEiJ_T0071818.1 MGP_CASTEiJ_G0028647.1 mouse_genomes_project 5 46236141 46254836 + MGP_CASTEiJ_P0071818 5730480H06Rik protein_coding protein_coding MGP_CASTEiJ_T0071819.1 MGP_CASTEiJ_G0028647.1 mouse_genomes_project 5 46236245 46254837 + MGP_CASTEiJ_P0071819 5730480H06Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071820.1 MGP_CASTEiJ_G0028647.1 mouse_genomes_project 5 46239301 46261600 + MGP_CASTEiJ_P0071820 5730480H06Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071821.1 MGP_CASTEiJ_G0028647.1 mouse_genomes_project 5 46244958 46254549 + 5730480H06Rik protein_coding retained_intron MGP_CASTEiJ_T0071829.1 MGP_CASTEiJ_G0028647.1 mouse_genomes_project 5 46258818 46264236 + 5730480H06Rik protein_coding retained_intron MGP_CASTEiJ_T0071830.1 MGP_CASTEiJ_G0028647.1 mouse_genomes_project 5 46261559 46280996 + 5730480H06Rik protein_coding retained_intron MGP_CASTEiJ_T0071832.1 MGP_CASTEiJ_G0028647.1 mouse_genomes_project 5 46262656 46281022 + 5730480H06Rik protein_coding processed_transcript MGP_CASTEiJ_T0014629.1 MGP_CASTEiJ_G0012792.1 mouse_genomes_project 5 124259785 124261147 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076131.1 MGP_CASTEiJ_G0029489.1 mouse_genomes_project 5 151786889 151966819 - MGP_CASTEiJ_P0076131 Flt1 protein_coding protein_coding MGP_CASTEiJ_T0076132.1 MGP_CASTEiJ_G0029489.1 mouse_genomes_project 5 151844043 151844530 - Flt1 protein_coding processed_transcript MGP_CASTEiJ_T0076133.1 MGP_CASTEiJ_G0029489.1 mouse_genomes_project 5 151867140 151966796 - MGP_CASTEiJ_P0076133 Flt1 protein_coding protein_coding MGP_CASTEiJ_T0076134.1 MGP_CASTEiJ_G0029489.1 mouse_genomes_project 5 151876681 151878708 - Flt1 protein_coding retained_intron MGP_CASTEiJ_T0076135.1 MGP_CASTEiJ_G0029489.1 mouse_genomes_project 5 151886223 151966796 - Flt1 protein_coding processed_transcript MGP_CASTEiJ_T0014392.1 MGP_CASTEiJ_G0012555.1 mouse_genomes_project 5 20417192 20417316 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004750.1 MGP_CASTEiJ_G0004093.1 mouse_genomes_project 5 147981991 147988275 - 2900089D17Rik antisense antisense MGP_CASTEiJ_T0004751.1 MGP_CASTEiJ_G0004093.1 mouse_genomes_project 5 147982078 148000308 - 2900089D17Rik antisense antisense MGP_CASTEiJ_T0008146.1 MGP_CASTEiJ_G0006637.1 mouse_genomes_project 5 125211078 125215454 - AI480526 lincRNA lincRNA MGP_CASTEiJ_T0008148.1 MGP_CASTEiJ_G0006637.1 mouse_genomes_project 5 125211639 125216691 - AI480526 lincRNA lincRNA MGP_CASTEiJ_T0008149.1 MGP_CASTEiJ_G0006637.1 mouse_genomes_project 5 125211810 125219818 - AI480526 lincRNA lincRNA MGP_CASTEiJ_T0008150.1 MGP_CASTEiJ_G0006637.1 mouse_genomes_project 5 125212186 125220408 - AI480526 lincRNA lincRNA MGP_CASTEiJ_T0008152.1 MGP_CASTEiJ_G0006637.1 mouse_genomes_project 5 125213569 125219831 - AI480526 lincRNA lincRNA MGP_CASTEiJ_T0008153.1 MGP_CASTEiJ_G0006637.1 mouse_genomes_project 5 125214815 125217633 - AI480526 lincRNA lincRNA MGP_CASTEiJ_T0008154.1 MGP_CASTEiJ_G0006637.1 mouse_genomes_project 5 125215387 125219809 - AI480526 lincRNA lincRNA MGP_CASTEiJ_T0001734.1 MGP_CASTEiJ_G0001657.1 mouse_genomes_project 5 122291101 122292064 - TEC TEC MGP_CASTEiJ_T0071140.1 MGP_CASTEiJ_G0028540.1 mouse_genomes_project 5 28993202 29029542 + MGP_CASTEiJ_P0071140 Bre protein_coding protein_coding MGP_CASTEiJ_T0071141.1 MGP_CASTEiJ_G0028540.1 mouse_genomes_project 5 28993422 29029974 + Bre protein_coding retained_intron MGP_CASTEiJ_T0071142.1 MGP_CASTEiJ_G0028540.1 mouse_genomes_project 5 28993426 29415964 + MGP_CASTEiJ_P0071142 Bre protein_coding protein_coding MGP_CASTEiJ_T0071143.1 MGP_CASTEiJ_G0028540.1 mouse_genomes_project 5 28993448 29003259 + Bre protein_coding processed_transcript MGP_CASTEiJ_T0071144.1 MGP_CASTEiJ_G0028540.1 mouse_genomes_project 5 28993458 29331857 + Bre protein_coding retained_intron MGP_CASTEiJ_T0071145.1 MGP_CASTEiJ_G0028540.1 mouse_genomes_project 5 28993466 29151606 + Bre protein_coding retained_intron MGP_CASTEiJ_T0071146.1 MGP_CASTEiJ_G0028540.1 mouse_genomes_project 5 28993482 29415857 + MGP_CASTEiJ_P0071146 Bre protein_coding protein_coding MGP_CASTEiJ_T0071147.1 MGP_CASTEiJ_G0028540.1 mouse_genomes_project 5 28993502 29415749 + MGP_CASTEiJ_P0071147 Bre protein_coding protein_coding MGP_CASTEiJ_T0071148.1 MGP_CASTEiJ_G0028540.1 mouse_genomes_project 5 28993502 29415749 + MGP_CASTEiJ_P0071148 Bre protein_coding protein_coding MGP_CASTEiJ_T0071149.1 MGP_CASTEiJ_G0028540.1 mouse_genomes_project 5 28993502 29415749 + MGP_CASTEiJ_P0071149 Bre protein_coding protein_coding MGP_CASTEiJ_T0071150.1 MGP_CASTEiJ_G0028540.1 mouse_genomes_project 5 28993503 29137134 + MGP_CASTEiJ_P0071150 Bre protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071151.1 MGP_CASTEiJ_G0028540.1 mouse_genomes_project 5 28997313 29388784 + MGP_CASTEiJ_P0071151 Bre protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071152.1 MGP_CASTEiJ_G0028540.1 mouse_genomes_project 5 29102691 29137215 + Bre protein_coding processed_transcript MGP_CASTEiJ_T0071153.1 MGP_CASTEiJ_G0028540.1 mouse_genomes_project 5 29410729 29415756 + Bre protein_coding processed_transcript MGP_CASTEiJ_T0004562.1 MGP_CASTEiJ_G0003955.1 mouse_genomes_project 5 45837717 45840363 - 4930518C09Rik antisense antisense MGP_CASTEiJ_T0001571.1 MGP_CASTEiJ_G0001495.1 mouse_genomes_project 5 64059970 64060737 + TEC TEC MGP_CASTEiJ_T0075256.1 MGP_CASTEiJ_G0029309.1 mouse_genomes_project 5 139156665 139185489 - MGP_CASTEiJ_P0075256 Sh2b2 protein_coding protein_coding MGP_CASTEiJ_T0075257.1 MGP_CASTEiJ_G0029309.1 mouse_genomes_project 5 139156667 139185538 - MGP_CASTEiJ_P0075257 Sh2b2 protein_coding protein_coding MGP_CASTEiJ_T0075258.1 MGP_CASTEiJ_G0029309.1 mouse_genomes_project 5 139158885 139161181 - Sh2b2 protein_coding retained_intron MGP_CASTEiJ_T0075259.1 MGP_CASTEiJ_G0029309.1 mouse_genomes_project 5 139162320 139185472 - MGP_CASTEiJ_P0075259 Sh2b2 protein_coding protein_coding MGP_CASTEiJ_T0075260.1 MGP_CASTEiJ_G0029309.1 mouse_genomes_project 5 139173135 139187195 - MGP_CASTEiJ_P0075260 Sh2b2 protein_coding protein_coding MGP_CASTEiJ_T0014571.1 MGP_CASTEiJ_G0012734.1 mouse_genomes_project 5 99719519 99719977 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004683.1 MGP_CASTEiJ_G0004045.1 mouse_genomes_project 5 123796018 123796624 + 1700008B11Rik antisense antisense MGP_CASTEiJ_T0014665.1 MGP_CASTEiJ_G0012828.1 mouse_genomes_project 5 146235551 146235789 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072127.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65550135 65790529 + Limch1 protein_coding retained_intron MGP_CASTEiJ_T0072128.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65550153 65870262 + MGP_CASTEiJ_P0072128 Limch1 protein_coding protein_coding MGP_CASTEiJ_T0072129.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65550175 65552764 + Limch1 protein_coding retained_intron MGP_CASTEiJ_T0072130.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65550191 65870125 + MGP_CASTEiJ_P0072130 Limch1 protein_coding protein_coding MGP_CASTEiJ_T0072131.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65550197 65769743 + MGP_CASTEiJ_P0072131 Limch1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072132.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65550218 65871213 + MGP_CASTEiJ_P0072132 Limch1 protein_coding protein_coding MGP_CASTEiJ_T0072133.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65709460 65785046 + MGP_CASTEiJ_P0072133 Limch1 protein_coding protein_coding MGP_CASTEiJ_T0072134.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65783902 65868752 + Limch1 protein_coding processed_transcript MGP_CASTEiJ_T0072135.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65784313 65871204 + MGP_CASTEiJ_P0072135 Limch1 protein_coding protein_coding MGP_CASTEiJ_T0072136.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65784456 65850801 + Limch1 protein_coding retained_intron MGP_CASTEiJ_T0072137.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65784468 65816675 + MGP_CASTEiJ_P0072137 Limch1 protein_coding protein_coding MGP_CASTEiJ_T0072138.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65784541 65790781 + Limch1 protein_coding retained_intron MGP_CASTEiJ_T0072139.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65784853 65816705 + MGP_CASTEiJ_P0072139 Limch1 protein_coding protein_coding MGP_CASTEiJ_T0072140.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65792880 65817151 + Limch1 protein_coding processed_transcript MGP_CASTEiJ_T0072141.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65814989 65817256 + Limch1 protein_coding retained_intron MGP_CASTEiJ_T0072142.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65857765 65868704 + Limch1 protein_coding processed_transcript MGP_CASTEiJ_T0072143.1 MGP_CASTEiJ_G0028699.1 mouse_genomes_project 5 65857820 65868699 + MGP_CASTEiJ_P0072143 Limch1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0010422.1 MGP_CASTEiJ_G0008610.1 mouse_genomes_project 5 138247523 138247604 - Mir7033 miRNA miRNA MGP_CASTEiJ_T0014534.1 MGP_CASTEiJ_G0012697.1 mouse_genomes_project 5 82704251 82704618 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004660.1 MGP_CASTEiJ_G0004030.1 mouse_genomes_project 5 117611016 117611935 + Gm13837 antisense antisense MGP_CASTEiJ_T0008268.1 MGP_CASTEiJ_G0006718.1 mouse_genomes_project 5 155108623 155111150 - Gm43598 lincRNA lincRNA MGP_CASTEiJ_T0099902.1 MGP_CASTEiJ_G0036815.1 mouse_genomes_project 5 96642498 96642692 + Gm24623 snRNA snRNA MGP_CASTEiJ_T0072214.1 MGP_CASTEiJ_G0028714.1 mouse_genomes_project 5 69864015 70009160 - MGP_CASTEiJ_P0072214 Gabra2 protein_coding protein_coding MGP_CASTEiJ_T0072215.1 MGP_CASTEiJ_G0028714.1 mouse_genomes_project 5 69865920 70008887 - MGP_CASTEiJ_P0072215 Gabra2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072216.1 MGP_CASTEiJ_G0028714.1 mouse_genomes_project 5 69867159 69922513 - Gabra2 protein_coding retained_intron MGP_CASTEiJ_T0072217.1 MGP_CASTEiJ_G0028714.1 mouse_genomes_project 5 69867259 70007765 - MGP_CASTEiJ_P0072217 Gabra2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072218.1 MGP_CASTEiJ_G0028714.1 mouse_genomes_project 5 69879537 70008320 - Gabra2 protein_coding processed_transcript MGP_CASTEiJ_T0072219.1 MGP_CASTEiJ_G0028714.1 mouse_genomes_project 5 70004875 70007987 - Gabra2 protein_coding retained_intron MGP_CASTEiJ_T0014661.1 MGP_CASTEiJ_G0012824.1 mouse_genomes_project 5 143079896 143080272 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014696.1 MGP_CASTEiJ_G0012859.1 mouse_genomes_project 5 154727442 154727830 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014390.1 MGP_CASTEiJ_G0012553.1 mouse_genomes_project 5 20025043 20025632 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004661.1 MGP_CASTEiJ_G0004031.1 mouse_genomes_project 5 117805724 117834385 + Srrm4os antisense antisense MGP_CASTEiJ_T0004662.1 MGP_CASTEiJ_G0004031.1 mouse_genomes_project 5 117805724 117838616 + Srrm4os antisense antisense MGP_CASTEiJ_T0072892.1 MGP_CASTEiJ_G0028867.1 mouse_genomes_project 5 93315137 93398923 + MGP_CASTEiJ_P0072892 Sept11 protein_coding protein_coding MGP_CASTEiJ_T0072893.1 MGP_CASTEiJ_G0028867.1 mouse_genomes_project 5 93315138 93315778 + Sept11 protein_coding retained_intron MGP_CASTEiJ_T0072894.1 MGP_CASTEiJ_G0028867.1 mouse_genomes_project 5 93315138 93393947 + MGP_CASTEiJ_P0072894 Sept11 protein_coding protein_coding MGP_CASTEiJ_T0072895.1 MGP_CASTEiJ_G0028867.1 mouse_genomes_project 5 93315148 93383819 + MGP_CASTEiJ_P0072895 Sept11 protein_coding protein_coding MGP_CASTEiJ_T0072896.1 MGP_CASTEiJ_G0028867.1 mouse_genomes_project 5 93315151 93400403 + MGP_CASTEiJ_P0072896 Sept11 protein_coding protein_coding MGP_CASTEiJ_T0072897.1 MGP_CASTEiJ_G0028867.1 mouse_genomes_project 5 93315226 93400413 + MGP_CASTEiJ_P0072897 Sept11 protein_coding protein_coding MGP_CASTEiJ_T0072898.1 MGP_CASTEiJ_G0028867.1 mouse_genomes_project 5 93315236 93370922 + MGP_CASTEiJ_P0072898 Sept11 protein_coding protein_coding MGP_CASTEiJ_T0072899.1 MGP_CASTEiJ_G0028867.1 mouse_genomes_project 5 93315271 93400045 + MGP_CASTEiJ_P0072899 Sept11 protein_coding protein_coding MGP_CASTEiJ_T0072900.1 MGP_CASTEiJ_G0028867.1 mouse_genomes_project 5 93370881 93380094 + Sept11 protein_coding retained_intron MGP_CASTEiJ_T0073963.1 MGP_CASTEiJ_G0029083.1 mouse_genomes_project 5 117364442 117413273 - MGP_CASTEiJ_P0073963 Tmem233 protein_coding protein_coding MGP_CASTEiJ_T0071100.1 MGP_CASTEiJ_G0028535.1 mouse_genomes_project 5 28766453 28789529 + MGP_CASTEiJ_P0071100 Gpn1 protein_coding protein_coding MGP_CASTEiJ_T0071101.1 MGP_CASTEiJ_G0028535.1 mouse_genomes_project 5 28766464 28774906 + Gpn1 protein_coding retained_intron MGP_CASTEiJ_T0071102.1 MGP_CASTEiJ_G0028535.1 mouse_genomes_project 5 28766465 28769455 + MGP_CASTEiJ_P0071102 Gpn1 protein_coding protein_coding MGP_CASTEiJ_T0071103.1 MGP_CASTEiJ_G0028535.1 mouse_genomes_project 5 28766479 28770998 + MGP_CASTEiJ_P0071103 Gpn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071104.1 MGP_CASTEiJ_G0028535.1 mouse_genomes_project 5 28766506 28775410 + Gpn1 protein_coding retained_intron MGP_CASTEiJ_T0071105.1 MGP_CASTEiJ_G0028535.1 mouse_genomes_project 5 28766713 28769040 + Gpn1 protein_coding processed_transcript MGP_CASTEiJ_T0071106.1 MGP_CASTEiJ_G0028535.1 mouse_genomes_project 5 28781840 28787447 + Gpn1 protein_coding retained_intron MGP_CASTEiJ_T0001701.1 MGP_CASTEiJ_G0001624.1 mouse_genomes_project 5 113616350 113617631 + TEC TEC MGP_CASTEiJ_T0001614.1 MGP_CASTEiJ_G0001538.1 mouse_genomes_project 5 68082164 68084549 - TEC TEC MGP_CASTEiJ_T0004704.1 MGP_CASTEiJ_G0004059.1 mouse_genomes_project 5 127214278 127214808 + Gm42838 antisense antisense MGP_CASTEiJ_T0014649.1 MGP_CASTEiJ_G0012812.1 mouse_genomes_project 5 140319797 140320044 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075685.1 MGP_CASTEiJ_G0029390.1 mouse_genomes_project 5 143084800 143118290 - MGP_CASTEiJ_P0075685 Micall2 protein_coding protein_coding MGP_CASTEiJ_T0075686.1 MGP_CASTEiJ_G0029390.1 mouse_genomes_project 5 143084998 143088660 - Micall2 protein_coding retained_intron MGP_CASTEiJ_T0075687.1 MGP_CASTEiJ_G0029390.1 mouse_genomes_project 5 143088567 143090053 - MGP_CASTEiJ_P0075687 Micall2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0007944.1 MGP_CASTEiJ_G0006493.1 mouse_genomes_project 5 63051955 63058932 + C030018K13Rik lincRNA lincRNA MGP_CASTEiJ_T0007945.1 MGP_CASTEiJ_G0006493.1 mouse_genomes_project 5 63051961 63054718 + C030018K13Rik lincRNA lincRNA MGP_CASTEiJ_T0007946.1 MGP_CASTEiJ_G0006493.1 mouse_genomes_project 5 63051982 63057430 + C030018K13Rik lincRNA lincRNA MGP_CASTEiJ_T0102355.1 MGP_CASTEiJ_G0039080.1 mouse_genomes_project 5 95553129 95555607 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0004716.1 MGP_CASTEiJ_G0004069.1 mouse_genomes_project 5 137361358 137367635 + Gm42884 antisense antisense MGP_CASTEiJ_T0004717.1 MGP_CASTEiJ_G0004069.1 mouse_genomes_project 5 137365818 137367835 + Gm42884 antisense antisense MGP_CASTEiJ_T0001456.1 MGP_CASTEiJ_G0001382.1 mouse_genomes_project 5 33106123 33106772 - TEC TEC MGP_CASTEiJ_T0099857.1 MGP_CASTEiJ_G0036770.1 mouse_genomes_project 5 4189254 4189404 - Gm24525 snRNA snRNA MGP_CASTEiJ_T0073020.1 MGP_CASTEiJ_G0028896.1 mouse_genomes_project 5 100367665 100428851 - MGP_CASTEiJ_P0073020 Lin54 protein_coding protein_coding MGP_CASTEiJ_T0073021.1 MGP_CASTEiJ_G0028896.1 mouse_genomes_project 5 100367675 100427121 - MGP_CASTEiJ_P0073021 Lin54 protein_coding protein_coding MGP_CASTEiJ_T0073022.1 MGP_CASTEiJ_G0028896.1 mouse_genomes_project 5 100367780 100427163 - MGP_CASTEiJ_P0073022 Lin54 protein_coding protein_coding MGP_CASTEiJ_T0073023.1 MGP_CASTEiJ_G0028896.1 mouse_genomes_project 5 100367780 100428887 - MGP_CASTEiJ_P0073023 Lin54 protein_coding protein_coding MGP_CASTEiJ_T0073024.1 MGP_CASTEiJ_G0028896.1 mouse_genomes_project 5 100367791 100427108 - MGP_CASTEiJ_P0073024 Lin54 protein_coding protein_coding MGP_CASTEiJ_T0073025.1 MGP_CASTEiJ_G0028896.1 mouse_genomes_project 5 100367949 100428900 - MGP_CASTEiJ_P0073025 Lin54 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073026.1 MGP_CASTEiJ_G0028896.1 mouse_genomes_project 5 100369301 100427053 - MGP_CASTEiJ_P0073026 Lin54 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073027.1 MGP_CASTEiJ_G0028896.1 mouse_genomes_project 5 100369301 100427053 - MGP_CASTEiJ_P0073027 Lin54 protein_coding protein_coding MGP_CASTEiJ_T0073028.1 MGP_CASTEiJ_G0028896.1 mouse_genomes_project 5 100385860 100414042 - MGP_CASTEiJ_P0073028 Lin54 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073029.1 MGP_CASTEiJ_G0028896.1 mouse_genomes_project 5 100413040 100427108 - Lin54 protein_coding retained_intron MGP_CASTEiJ_T0074811.1 MGP_CASTEiJ_G0029229.1 mouse_genomes_project 5 132073410 132099993 + MGP_CASTEiJ_P0074811 Mmp17 protein_coding protein_coding MGP_CASTEiJ_T0074812.1 MGP_CASTEiJ_G0029229.1 mouse_genomes_project 5 132085610 132091426 + Mmp17 protein_coding retained_intron MGP_CASTEiJ_T0008031.1 MGP_CASTEiJ_G0006561.1 mouse_genomes_project 5 102105341 102106851 + Gm29707 lincRNA lincRNA MGP_CASTEiJ_T0008032.1 MGP_CASTEiJ_G0006561.1 mouse_genomes_project 5 102105970 102106409 + Gm29707 lincRNA lincRNA MGP_CASTEiJ_T0010416.1 MGP_CASTEiJ_G0008604.1 mouse_genomes_project 5 125631366 125631425 - Mir7647 miRNA miRNA MGP_CASTEiJ_T0071200.1 MGP_CASTEiJ_G0028550.1 mouse_genomes_project 5 30634569 30652078 - protein_coding retained_intron MGP_CASTEiJ_T0071201.1 MGP_CASTEiJ_G0028550.1 mouse_genomes_project 5 30650071 30656652 - MGP_CASTEiJ_P0071201 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071202.1 MGP_CASTEiJ_G0028550.1 mouse_genomes_project 5 30650080 30655687 - protein_coding retained_intron MGP_CASTEiJ_T0071203.1 MGP_CASTEiJ_G0028550.1 mouse_genomes_project 5 30650081 30652089 - protein_coding retained_intron MGP_CASTEiJ_T0071204.1 MGP_CASTEiJ_G0028550.1 mouse_genomes_project 5 30652554 30655697 - MGP_CASTEiJ_P0071204 protein_coding protein_coding MGP_CASTEiJ_T0007982.1 MGP_CASTEiJ_G0006522.1 mouse_genomes_project 5 76814989 76823595 + Gm42761 lincRNA lincRNA MGP_CASTEiJ_T0014360.1 MGP_CASTEiJ_G0012523.1 mouse_genomes_project 5 7744114 7744583 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001500.1 MGP_CASTEiJ_G0001426.1 mouse_genomes_project 5 46493496 46497003 - TEC TEC MGP_CASTEiJ_T0074438.1 MGP_CASTEiJ_G0029167.1 mouse_genomes_project 5 125220934 125230355 + Setd1b protein_coding retained_intron MGP_CASTEiJ_T0074439.1 MGP_CASTEiJ_G0029167.1 mouse_genomes_project 5 125220934 125249419 + MGP_CASTEiJ_P0074439 Setd1b protein_coding protein_coding MGP_CASTEiJ_T0074440.1 MGP_CASTEiJ_G0029167.1 mouse_genomes_project 5 125220934 125250627 + MGP_CASTEiJ_P0074440 Setd1b protein_coding protein_coding MGP_CASTEiJ_T0074441.1 MGP_CASTEiJ_G0029167.1 mouse_genomes_project 5 125223345 125249419 + MGP_CASTEiJ_P0074441 Setd1b protein_coding protein_coding MGP_CASTEiJ_T0074442.1 MGP_CASTEiJ_G0029167.1 mouse_genomes_project 5 125245174 125247474 + Setd1b protein_coding retained_intron MGP_CASTEiJ_T0074443.1 MGP_CASTEiJ_G0029167.1 mouse_genomes_project 5 125245846 125246570 + MGP_CASTEiJ_P0074443 Setd1b protein_coding protein_coding MGP_CASTEiJ_T0010417.1 MGP_CASTEiJ_G0008605.1 mouse_genomes_project 5 126133717 126133796 + Mir7032 miRNA miRNA MGP_CASTEiJ_T0001494.1 MGP_CASTEiJ_G0001420.1 mouse_genomes_project 5 45895111 45897708 + TEC TEC MGP_CASTEiJ_T0072683.1 MGP_CASTEiJ_G0028818.1 mouse_genomes_project 5 88629248 88630881 + MGP_CASTEiJ_P0072683 Utp3 protein_coding protein_coding MGP_CASTEiJ_T0014595.1 MGP_CASTEiJ_G0012758.1 mouse_genomes_project 5 108099822 108102643 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001400.1 MGP_CASTEiJ_G0001329.1 mouse_genomes_project 5 10749693 10751554 - TEC TEC MGP_CASTEiJ_T0001491.1 MGP_CASTEiJ_G0001417.1 mouse_genomes_project 5 43672606 43673742 + TEC TEC MGP_CASTEiJ_T0074034.1 MGP_CASTEiJ_G0029097.1 mouse_genomes_project 5 119563232 119659105 - MGP_CASTEiJ_P0074034 Fbxw8 protein_coding protein_coding MGP_CASTEiJ_T0074035.1 MGP_CASTEiJ_G0029097.1 mouse_genomes_project 5 119575705 119659067 - Fbxw8 protein_coding retained_intron MGP_CASTEiJ_T0073591.1 MGP_CASTEiJ_G0029015.1 mouse_genomes_project 5 113670812 113893010 - MGP_CASTEiJ_P0073591 Myo18b protein_coding protein_coding MGP_CASTEiJ_T0073592.1 MGP_CASTEiJ_G0029015.1 mouse_genomes_project 5 113670814 113756708 - Myo18b protein_coding processed_transcript MGP_CASTEiJ_T0073593.1 MGP_CASTEiJ_G0029015.1 mouse_genomes_project 5 113764500 113868438 - Myo18b protein_coding processed_transcript MGP_CASTEiJ_T0073594.1 MGP_CASTEiJ_G0029015.1 mouse_genomes_project 5 113811371 113869348 - MGP_CASTEiJ_P0073594 Myo18b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001443.1 MGP_CASTEiJ_G0001369.1 mouse_genomes_project 5 29825036 29827278 + TEC TEC MGP_CASTEiJ_T0004612.1 MGP_CASTEiJ_G0003996.1 mouse_genomes_project 5 99555354 99563283 + Gm16226 antisense antisense MGP_CASTEiJ_T0004613.1 MGP_CASTEiJ_G0003996.1 mouse_genomes_project 5 99555354 99592575 + Gm16226 antisense antisense MGP_CASTEiJ_T0004614.1 MGP_CASTEiJ_G0003996.1 mouse_genomes_project 5 99555359 99592577 + Gm16226 antisense antisense MGP_CASTEiJ_T0004615.1 MGP_CASTEiJ_G0003996.1 mouse_genomes_project 5 99555383 99592573 + Gm16226 antisense antisense MGP_CASTEiJ_T0072566.1 MGP_CASTEiJ_G0028773.1 mouse_genomes_project 5 85897468 85973185 - MGP_CASTEiJ_P0072566 protein_coding protein_coding MGP_CASTEiJ_T0072567.1 MGP_CASTEiJ_G0028773.1 mouse_genomes_project 5 85900609 85972893 - MGP_CASTEiJ_P0072567 protein_coding protein_coding MGP_CASTEiJ_T0072568.1 MGP_CASTEiJ_G0028773.1 mouse_genomes_project 5 85909438 85973121 - protein_coding retained_intron MGP_CASTEiJ_T0073030.1 MGP_CASTEiJ_G0028897.1 mouse_genomes_project 5 100448528 100481079 + MGP_CASTEiJ_P0073030 Cops4 protein_coding protein_coding MGP_CASTEiJ_T0073031.1 MGP_CASTEiJ_G0028897.1 mouse_genomes_project 5 100448662 100462022 + Cops4 protein_coding retained_intron MGP_CASTEiJ_T0073032.1 MGP_CASTEiJ_G0028897.1 mouse_genomes_project 5 100448676 100468481 + MGP_CASTEiJ_P0073032 Cops4 protein_coding protein_coding MGP_CASTEiJ_T0073033.1 MGP_CASTEiJ_G0028897.1 mouse_genomes_project 5 100448691 100463345 + MGP_CASTEiJ_P0073033 Cops4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073034.1 MGP_CASTEiJ_G0028897.1 mouse_genomes_project 5 100448956 100468367 + MGP_CASTEiJ_P0073034 Cops4 protein_coding protein_coding MGP_CASTEiJ_T0073035.1 MGP_CASTEiJ_G0028897.1 mouse_genomes_project 5 100458567 100477158 + MGP_CASTEiJ_P0073035 Cops4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073036.1 MGP_CASTEiJ_G0028897.1 mouse_genomes_project 5 100462166 100481056 + Cops4 protein_coding retained_intron MGP_CASTEiJ_T0076036.1 MGP_CASTEiJ_G0029466.1 mouse_genomes_project 5 149069891 149089259 + MGP_CASTEiJ_P0076036 Zfp655 protein_coding protein_coding MGP_CASTEiJ_T0076037.1 MGP_CASTEiJ_G0029466.1 mouse_genomes_project 5 149069923 149089258 + MGP_CASTEiJ_P0076037 Zfp655 protein_coding protein_coding MGP_CASTEiJ_T0076038.1 MGP_CASTEiJ_G0029466.1 mouse_genomes_project 5 149069924 149075544 + MGP_CASTEiJ_P0076038 Zfp655 protein_coding protein_coding MGP_CASTEiJ_T0076039.1 MGP_CASTEiJ_G0029466.1 mouse_genomes_project 5 149069925 149075414 + MGP_CASTEiJ_P0076039 Zfp655 protein_coding protein_coding MGP_CASTEiJ_T0076040.1 MGP_CASTEiJ_G0029466.1 mouse_genomes_project 5 149071614 149075378 + MGP_CASTEiJ_P0076040 Zfp655 protein_coding protein_coding MGP_CASTEiJ_T0014349.1 MGP_CASTEiJ_G0012512.1 mouse_genomes_project 5 3752703 3753270 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014614.1 MGP_CASTEiJ_G0012777.1 mouse_genomes_project 5 115224386 115225451 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072952.1 MGP_CASTEiJ_G0028881.1 mouse_genomes_project 5 97671370 97823185 - MGP_CASTEiJ_P0072952 Antxr2 protein_coding protein_coding MGP_CASTEiJ_T0072953.1 MGP_CASTEiJ_G0028881.1 mouse_genomes_project 5 97710924 97823266 - MGP_CASTEiJ_P0072953 Antxr2 protein_coding protein_coding MGP_CASTEiJ_T0072954.1 MGP_CASTEiJ_G0028881.1 mouse_genomes_project 5 97750782 97790513 - Antxr2 protein_coding processed_transcript MGP_CASTEiJ_T0101140.1 MGP_CASTEiJ_G0038053.1 mouse_genomes_project 5 111148006 111148158 + Gm26277 snoRNA snoRNA MGP_CASTEiJ_T0075371.1 MGP_CASTEiJ_G0029329.1 mouse_genomes_project 5 140363900 140392748 + MGP_CASTEiJ_P0075371 Ephb4 protein_coding protein_coding MGP_CASTEiJ_T0075372.1 MGP_CASTEiJ_G0029329.1 mouse_genomes_project 5 140363932 140398314 + MGP_CASTEiJ_P0075372 Ephb4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075373.1 MGP_CASTEiJ_G0029329.1 mouse_genomes_project 5 140363963 140392740 + MGP_CASTEiJ_P0075373 Ephb4 protein_coding protein_coding MGP_CASTEiJ_T0075374.1 MGP_CASTEiJ_G0029329.1 mouse_genomes_project 5 140364221 140392532 + MGP_CASTEiJ_P0075374 Ephb4 protein_coding protein_coding MGP_CASTEiJ_T0075375.1 MGP_CASTEiJ_G0029329.1 mouse_genomes_project 5 140364304 140392752 + MGP_CASTEiJ_P0075375 Ephb4 protein_coding protein_coding MGP_CASTEiJ_T0001418.1 MGP_CASTEiJ_G0001347.1 mouse_genomes_project 5 20868334 20869198 + TEC TEC MGP_CASTEiJ_T0098988.1 MGP_CASTEiJ_G0035908.1 mouse_genomes_project 5 155074724 155079056 + Gm42531 sense_intronic sense_intronic MGP_CASTEiJ_T0071432.1 MGP_CASTEiJ_G0028582.1 mouse_genomes_project 5 32552605 32559516 + MGP_CASTEiJ_P0071432 Hgfac protein_coding protein_coding MGP_CASTEiJ_T0071433.1 MGP_CASTEiJ_G0028582.1 mouse_genomes_project 5 32552673 32559553 + Hgfac protein_coding retained_intron MGP_CASTEiJ_T0071434.1 MGP_CASTEiJ_G0028582.1 mouse_genomes_project 5 32552673 32554775 + MGP_CASTEiJ_P0071434 Hgfac protein_coding protein_coding MGP_CASTEiJ_T0071435.1 MGP_CASTEiJ_G0028582.1 mouse_genomes_project 5 32554699 32556539 + Hgfac protein_coding retained_intron MGP_CASTEiJ_T0071436.1 MGP_CASTEiJ_G0028582.1 mouse_genomes_project 5 32555441 32558055 + MGP_CASTEiJ_P0071436 Hgfac protein_coding protein_coding MGP_CASTEiJ_T0071437.1 MGP_CASTEiJ_G0028582.1 mouse_genomes_project 5 32555918 32557004 + Hgfac protein_coding retained_intron MGP_CASTEiJ_T0071438.1 MGP_CASTEiJ_G0028582.1 mouse_genomes_project 5 32557657 32559498 + Hgfac protein_coding retained_intron MGP_CASTEiJ_T0076044.1 MGP_CASTEiJ_G0029468.1 mouse_genomes_project 5 149196554 149248155 + MGP_CASTEiJ_P0076044 Cyp3a57 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076045.1 MGP_CASTEiJ_G0029468.1 mouse_genomes_project 5 149196554 149276401 + MGP_CASTEiJ_P0076045 Cyp3a57 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073148.1 MGP_CASTEiJ_G0028923.1 mouse_genomes_project 5 104425070 104438542 + MGP_CASTEiJ_P0073148 Mepe protein_coding protein_coding MGP_CASTEiJ_T0001493.1 MGP_CASTEiJ_G0001419.1 mouse_genomes_project 5 44595480 44597331 + TEC TEC MGP_CASTEiJ_T0001496.1 MGP_CASTEiJ_G0001422.1 mouse_genomes_project 5 46060231 46062704 + TEC TEC MGP_CASTEiJ_T0014672.1 MGP_CASTEiJ_G0012835.1 mouse_genomes_project 5 148007994 148008132 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004537.1 MGP_CASTEiJ_G0003938.1 mouse_genomes_project 5 32543162 32544738 - Gm43791 antisense antisense MGP_CASTEiJ_T0074378.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124818464 124855808 - MGP_CASTEiJ_P0074378 Anapc5 protein_coding protein_coding MGP_CASTEiJ_T0074379.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124818725 124855749 - MGP_CASTEiJ_P0074379 Anapc5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074380.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124818725 124855756 - MGP_CASTEiJ_P0074380 Anapc5 protein_coding protein_coding MGP_CASTEiJ_T0074381.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124818725 124855756 - MGP_CASTEiJ_P0074381 Anapc5 protein_coding protein_coding MGP_CASTEiJ_T0074382.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124818727 124855749 - MGP_CASTEiJ_P0074382 Anapc5 protein_coding protein_coding MGP_CASTEiJ_T0074383.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124818731 124855749 - MGP_CASTEiJ_P0074383 Anapc5 protein_coding protein_coding MGP_CASTEiJ_T0074384.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124818735 124855763 - MGP_CASTEiJ_P0074384 Anapc5 protein_coding protein_coding MGP_CASTEiJ_T0074385.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124818918 124824500 - MGP_CASTEiJ_P0074385 Anapc5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074386.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124819419 124834104 - Anapc5 protein_coding retained_intron MGP_CASTEiJ_T0074387.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124822806 124825437 - MGP_CASTEiJ_P0074387 Anapc5 protein_coding protein_coding MGP_CASTEiJ_T0074388.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124824421 124836840 - Anapc5 protein_coding retained_intron MGP_CASTEiJ_T0074389.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124833768 124841763 - MGP_CASTEiJ_P0074389 Anapc5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074390.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124833843 124853055 - Anapc5 protein_coding processed_transcript MGP_CASTEiJ_T0074391.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124834468 124840774 - Anapc5 protein_coding retained_intron MGP_CASTEiJ_T0074392.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124834652 124855748 - Anapc5 protein_coding retained_intron MGP_CASTEiJ_T0074393.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124840225 124855487 - Anapc5 protein_coding retained_intron MGP_CASTEiJ_T0074394.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124841748 124855739 - MGP_CASTEiJ_P0074394 Anapc5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074395.1 MGP_CASTEiJ_G0029160.1 mouse_genomes_project 5 124852333 124855744 - Anapc5 protein_coding processed_transcript MGP_CASTEiJ_T0001475.1 MGP_CASTEiJ_G0001401.1 mouse_genomes_project 5 41943806 41947223 - TEC TEC MGP_CASTEiJ_T0010389.1 MGP_CASTEiJ_G0008577.1 mouse_genomes_project 5 74301982 74302056 + Mir7025 miRNA miRNA MGP_CASTEiJ_T0008132.1 MGP_CASTEiJ_G0006626.1 mouse_genomes_project 5 121149285 121158438 - Gm31314 lincRNA lincRNA MGP_CASTEiJ_T0008048.1 MGP_CASTEiJ_G0006572.1 mouse_genomes_project 5 106902286 106904584 - 4930432H08Rik lincRNA lincRNA MGP_CASTEiJ_T0073719.1 MGP_CASTEiJ_G0029039.1 mouse_genomes_project 5 115427251 115509981 + MGP_CASTEiJ_P0073719 Myo1h protein_coding protein_coding MGP_CASTEiJ_T0073720.1 MGP_CASTEiJ_G0029039.1 mouse_genomes_project 5 115454407 115509760 + MGP_CASTEiJ_P0073720 Myo1h protein_coding protein_coding MGP_CASTEiJ_T0073721.1 MGP_CASTEiJ_G0029039.1 mouse_genomes_project 5 115454407 115511321 + MGP_CASTEiJ_P0073721 Myo1h protein_coding protein_coding MGP_CASTEiJ_T0073722.1 MGP_CASTEiJ_G0029039.1 mouse_genomes_project 5 115503591 115511321 + Myo1h protein_coding retained_intron MGP_CASTEiJ_T0073723.1 MGP_CASTEiJ_G0029039.1 mouse_genomes_project 5 115503639 115510066 + Myo1h protein_coding retained_intron MGP_CASTEiJ_T0073724.1 MGP_CASTEiJ_G0029039.1 mouse_genomes_project 5 115503639 115510066 + MGP_CASTEiJ_P0073724 Myo1h protein_coding protein_coding MGP_CASTEiJ_T0073725.1 MGP_CASTEiJ_G0029039.1 mouse_genomes_project 5 115503639 115510066 + MGP_CASTEiJ_P0073725 Myo1h protein_coding protein_coding MGP_CASTEiJ_T0073726.1 MGP_CASTEiJ_G0029039.1 mouse_genomes_project 5 115503639 115510066 + MGP_CASTEiJ_P0073726 Myo1h protein_coding protein_coding MGP_CASTEiJ_T0073727.1 MGP_CASTEiJ_G0029039.1 mouse_genomes_project 5 115504182 115506506 + Myo1h protein_coding retained_intron MGP_CASTEiJ_T0073728.1 MGP_CASTEiJ_G0029039.1 mouse_genomes_project 5 115510159 115512103 + Myo1h protein_coding processed_transcript MGP_CASTEiJ_T0001699.1 MGP_CASTEiJ_G0001622.1 mouse_genomes_project 5 113325812 113327014 + TEC TEC MGP_CASTEiJ_T0072161.1 MGP_CASTEiJ_G0028703.1 mouse_genomes_project 5 66172938 66260544 - MGP_CASTEiJ_P0072161 Bend4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0072162.1 MGP_CASTEiJ_G0028703.1 mouse_genomes_project 5 66219014 66260731 - MGP_CASTEiJ_P0072162 Bend4 protein_coding protein_coding MGP_CASTEiJ_T0072163.1 MGP_CASTEiJ_G0028703.1 mouse_genomes_project 5 66219015 66260549 - MGP_CASTEiJ_P0072163 Bend4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072164.1 MGP_CASTEiJ_G0028703.1 mouse_genomes_project 5 66219015 66260549 - MGP_CASTEiJ_P0072164 Bend4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072165.1 MGP_CASTEiJ_G0028703.1 mouse_genomes_project 5 66219015 66260262 - MGP_CASTEiJ_P0072165 Bend4 protein_coding protein_coding MGP_CASTEiJ_T0072166.1 MGP_CASTEiJ_G0028703.1 mouse_genomes_project 5 66219015 66261242 - MGP_CASTEiJ_P0072166 Bend4 protein_coding protein_coding MGP_CASTEiJ_T0073236.1 MGP_CASTEiJ_G0028946.1 mouse_genomes_project 5 107701068 107900963 - MGP_CASTEiJ_P0073236 Tgfbr3 protein_coding protein_coding MGP_CASTEiJ_T0073237.1 MGP_CASTEiJ_G0028946.1 mouse_genomes_project 5 107705247 107798885 - Tgfbr3 protein_coding processed_transcript MGP_CASTEiJ_T0073238.1 MGP_CASTEiJ_G0028946.1 mouse_genomes_project 5 107714498 107731273 - MGP_CASTEiJ_P0073238 Tgfbr3 protein_coding protein_coding MGP_CASTEiJ_T0073239.1 MGP_CASTEiJ_G0028946.1 mouse_genomes_project 5 107748265 107900929 - Tgfbr3 protein_coding retained_intron MGP_CASTEiJ_T0073244.1 MGP_CASTEiJ_G0028948.1 mouse_genomes_project 5 108021666 108032976 + MGP_CASTEiJ_P0073244 Ephx4 protein_coding protein_coding MGP_CASTEiJ_T0073245.1 MGP_CASTEiJ_G0028948.1 mouse_genomes_project 5 108022436 108051836 + MGP_CASTEiJ_P0073245 Ephx4 protein_coding protein_coding MGP_CASTEiJ_T0073246.1 MGP_CASTEiJ_G0028948.1 mouse_genomes_project 5 108022715 108032884 + MGP_CASTEiJ_P0073246 Ephx4 protein_coding protein_coding MGP_CASTEiJ_T0073247.1 MGP_CASTEiJ_G0028948.1 mouse_genomes_project 5 108024751 108032944 + MGP_CASTEiJ_P0073247 Ephx4 protein_coding protein_coding MGP_CASTEiJ_T0074730.1 MGP_CASTEiJ_G0029213.1 mouse_genomes_project 5 127578957 127580189 + MGP_CASTEiJ_P0074730 Gm10382 protein_coding protein_coding MGP_CASTEiJ_T0004645.1 MGP_CASTEiJ_G0004019.1 mouse_genomes_project 5 113786135 113788506 + antisense antisense MGP_CASTEiJ_T0004646.1 MGP_CASTEiJ_G0004019.1 mouse_genomes_project 5 113786167 113788757 + antisense antisense MGP_CASTEiJ_T0001544.1 MGP_CASTEiJ_G0001469.1 mouse_genomes_project 5 53971782 53975513 - TEC TEC MGP_CASTEiJ_T0072441.1 MGP_CASTEiJ_G0028754.1 mouse_genomes_project 5 75834982 75892737 + Cep135 protein_coding retained_intron MGP_CASTEiJ_T0072442.1 MGP_CASTEiJ_G0028754.1 mouse_genomes_project 5 75834985 75894266 + MGP_CASTEiJ_P0072442 Cep135 protein_coding protein_coding MGP_CASTEiJ_T0072443.1 MGP_CASTEiJ_G0028754.1 mouse_genomes_project 5 75837983 75894265 + MGP_CASTEiJ_P0072443 Cep135 protein_coding protein_coding MGP_CASTEiJ_T0001826.1 MGP_CASTEiJ_G0001747.1 mouse_genomes_project 5 143754861 143757296 - TEC TEC MGP_CASTEiJ_T0099871.1 MGP_CASTEiJ_G0036784.1 mouse_genomes_project 5 30335412 30335502 + Gm24003 snRNA snRNA MGP_CASTEiJ_T0001535.1 MGP_CASTEiJ_G0001460.1 mouse_genomes_project 5 50081514 50083965 - TEC TEC MGP_CASTEiJ_T0007905.1 MGP_CASTEiJ_G0006458.1 mouse_genomes_project 5 36019984 36024779 + 4930487D11Rik lincRNA lincRNA MGP_CASTEiJ_T0075877.1 MGP_CASTEiJ_G0029434.1 mouse_genomes_project 5 147184328 147227385 + MGP_CASTEiJ_P0075877 Daglb protein_coding protein_coding MGP_CASTEiJ_T0075878.1 MGP_CASTEiJ_G0029434.1 mouse_genomes_project 5 147184357 147195495 + Daglb protein_coding retained_intron MGP_CASTEiJ_T0075879.1 MGP_CASTEiJ_G0029434.1 mouse_genomes_project 5 147192724 147197794 + Daglb protein_coding retained_intron MGP_CASTEiJ_T0075880.1 MGP_CASTEiJ_G0029434.1 mouse_genomes_project 5 147208258 147211569 + Daglb protein_coding retained_intron MGP_CASTEiJ_T0008251.1 MGP_CASTEiJ_G0006708.1 mouse_genomes_project 5 153565214 153566258 + Gm43332 lincRNA lincRNA MGP_CASTEiJ_T0074817.1 MGP_CASTEiJ_G0029232.1 mouse_genomes_project 5 132215140 132222238 + MGP_CASTEiJ_P0074817 Mrps17 protein_coding protein_coding MGP_CASTEiJ_T0074818.1 MGP_CASTEiJ_G0029232.1 mouse_genomes_project 5 132215146 132218144 + MGP_CASTEiJ_P0074818 Mrps17 protein_coding protein_coding MGP_CASTEiJ_T0074819.1 MGP_CASTEiJ_G0029232.1 mouse_genomes_project 5 132215147 132218061 + MGP_CASTEiJ_P0074819 Mrps17 protein_coding protein_coding MGP_CASTEiJ_T0074820.1 MGP_CASTEiJ_G0029232.1 mouse_genomes_project 5 132215152 132217683 + MGP_CASTEiJ_P0074820 Mrps17 protein_coding protein_coding MGP_CASTEiJ_T0074821.1 MGP_CASTEiJ_G0029232.1 mouse_genomes_project 5 132215154 132218539 + MGP_CASTEiJ_P0074821 Mrps17 protein_coding protein_coding MGP_CASTEiJ_T0074822.1 MGP_CASTEiJ_G0029232.1 mouse_genomes_project 5 132215159 132218355 + MGP_CASTEiJ_P0074822 Mrps17 protein_coding protein_coding MGP_CASTEiJ_T0074823.1 MGP_CASTEiJ_G0029232.1 mouse_genomes_project 5 132215161 132217004 + Mrps17 protein_coding retained_intron MGP_CASTEiJ_T0074824.1 MGP_CASTEiJ_G0029232.1 mouse_genomes_project 5 132215177 132217718 + MGP_CASTEiJ_P0074824 Mrps17 protein_coding protein_coding MGP_CASTEiJ_T0074825.1 MGP_CASTEiJ_G0029232.1 mouse_genomes_project 5 132215201 132217954 + MGP_CASTEiJ_P0074825 Mrps17 protein_coding protein_coding MGP_CASTEiJ_T0074826.1 MGP_CASTEiJ_G0029232.1 mouse_genomes_project 5 132215220 132218111 + MGP_CASTEiJ_P0074826 Mrps17 protein_coding protein_coding MGP_CASTEiJ_T0074827.1 MGP_CASTEiJ_G0029232.1 mouse_genomes_project 5 132215340 132216492 + MGP_CASTEiJ_P0074827 Mrps17 protein_coding protein_coding MGP_CASTEiJ_T0001435.1 MGP_CASTEiJ_G0001362.1 mouse_genomes_project 5 28493135 28497090 - TEC TEC MGP_CASTEiJ_T0072599.1 MGP_CASTEiJ_G0028786.1 mouse_genomes_project 5 86953618 86985707 - MGP_CASTEiJ_P0072599 Ugt2b36 protein_coding protein_coding MGP_CASTEiJ_T0072600.1 MGP_CASTEiJ_G0028786.1 mouse_genomes_project 5 86955158 87291339 - MGP_CASTEiJ_P0072600 Ugt2b36 protein_coding protein_coding MGP_CASTEiJ_T0072601.1 MGP_CASTEiJ_G0028786.1 mouse_genomes_project 5 86955161 87289301 - Ugt2b36 protein_coding retained_intron MGP_CASTEiJ_T0072602.1 MGP_CASTEiJ_G0028786.1 mouse_genomes_project 5 86970970 87291337 - MGP_CASTEiJ_P0072602 Ugt2b36 protein_coding protein_coding MGP_CASTEiJ_T0014687.1 MGP_CASTEiJ_G0012850.1 mouse_genomes_project 5 151617910 151618370 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001751.1 MGP_CASTEiJ_G0001674.1 mouse_genomes_project 5 125097164 125100920 + TEC TEC MGP_CASTEiJ_T0072348.1 MGP_CASTEiJ_G0028739.1 mouse_genomes_project 5 73253792 73269171 + MGP_CASTEiJ_P0072348 Rasl11b protein_coding unknown_likely_coding MGP_CASTEiJ_T0072349.1 MGP_CASTEiJ_G0028739.1 mouse_genomes_project 5 73254005 73269613 + MGP_CASTEiJ_P0072349 Rasl11b protein_coding protein_coding MGP_CASTEiJ_T0072350.1 MGP_CASTEiJ_G0028739.1 mouse_genomes_project 5 73254164 73255010 + Rasl11b protein_coding retained_intron MGP_CASTEiJ_T0072351.1 MGP_CASTEiJ_G0028739.1 mouse_genomes_project 5 73268019 73269604 + Rasl11b protein_coding retained_intron MGP_CASTEiJ_T0010418.1 MGP_CASTEiJ_G0008606.1 mouse_genomes_project 5 126586715 126586795 - Gm27486 miRNA miRNA MGP_CASTEiJ_T0004506.1 MGP_CASTEiJ_G0003912.1 mouse_genomes_project 5 12793834 12797697 - Gm43000 antisense antisense MGP_CASTEiJ_T0072514.1 MGP_CASTEiJ_G0028767.1 mouse_genomes_project 5 76659546 76721797 - MGP_CASTEiJ_P0072514 Igfbp7 protein_coding protein_coding MGP_CASTEiJ_T0072515.1 MGP_CASTEiJ_G0028767.1 mouse_genomes_project 5 76659554 76721796 - MGP_CASTEiJ_P0072515 Igfbp7 protein_coding protein_coding MGP_CASTEiJ_T0001685.1 MGP_CASTEiJ_G0001608.1 mouse_genomes_project 5 107730467 107734318 - TEC TEC MGP_CASTEiJ_T0102367.1 MGP_CASTEiJ_G0039092.1 mouse_genomes_project 5 156225105 156225193 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0001773.1 MGP_CASTEiJ_G0001695.1 mouse_genomes_project 5 130995847 130997227 - TEC TEC MGP_CASTEiJ_T0008210.1 MGP_CASTEiJ_G0006673.1 mouse_genomes_project 5 140282915 140298319 - Gm42456 lincRNA lincRNA MGP_CASTEiJ_T0073772.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115893250 115940546 - MGP_CASTEiJ_P0073772 Git2 protein_coding protein_coding MGP_CASTEiJ_T0073773.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115893251 115940543 - MGP_CASTEiJ_P0073773 Git2 protein_coding protein_coding MGP_CASTEiJ_T0073774.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115893254 115940485 - MGP_CASTEiJ_P0073774 Git2 protein_coding protein_coding MGP_CASTEiJ_T0073775.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115893254 115940543 - MGP_CASTEiJ_P0073775 Git2 protein_coding protein_coding MGP_CASTEiJ_T0073776.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115893254 115909372 - MGP_CASTEiJ_P0073776 Git2 protein_coding protein_coding MGP_CASTEiJ_T0073777.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115895337 115940513 - MGP_CASTEiJ_P0073777 Git2 protein_coding protein_coding MGP_CASTEiJ_T0073778.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115895644 115940546 - MGP_CASTEiJ_P0073778 Git2 protein_coding protein_coding MGP_CASTEiJ_T0073779.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115898998 115899947 - Git2 protein_coding processed_transcript MGP_CASTEiJ_T0073780.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115899646 115913441 - MGP_CASTEiJ_P0073780 Git2 protein_coding protein_coding MGP_CASTEiJ_T0073781.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115903981 115906805 - Git2 protein_coding retained_intron MGP_CASTEiJ_T0073782.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115912490 115940546 - Git2 protein_coding retained_intron MGP_CASTEiJ_T0073783.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115913378 115933651 - MGP_CASTEiJ_P0073783 Git2 protein_coding protein_coding MGP_CASTEiJ_T0073784.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115921378 115928821 - Git2 protein_coding retained_intron MGP_CASTEiJ_T0073785.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115931475 115942594 - MGP_CASTEiJ_P0073785 Git2 protein_coding protein_coding MGP_CASTEiJ_T0073786.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115931579 115940546 - Git2 protein_coding processed_transcript MGP_CASTEiJ_T0073787.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115931666 115934280 - Git2 protein_coding processed_transcript MGP_CASTEiJ_T0073788.1 MGP_CASTEiJ_G0029048.1 mouse_genomes_project 5 115932805 115940518 - Git2 protein_coding retained_intron MGP_CASTEiJ_T0001786.1 MGP_CASTEiJ_G0001708.1 mouse_genomes_project 5 134242828 134244595 - TEC TEC MGP_CASTEiJ_T0010366.1 MGP_CASTEiJ_G0008554.1 mouse_genomes_project 5 19812853 19812975 + Gm44363 miRNA miRNA MGP_CASTEiJ_T0004642.1 MGP_CASTEiJ_G0004016.1 mouse_genomes_project 5 111622784 111630765 + Gm15559 antisense antisense MGP_CASTEiJ_T0070808.1 MGP_CASTEiJ_G0028490.1 mouse_genomes_project 5 27318768 27330278 - protein_coding retained_intron MGP_CASTEiJ_T0070809.1 MGP_CASTEiJ_G0028490.1 mouse_genomes_project 5 27318768 27330233 - MGP_CASTEiJ_P0070809 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070810.1 MGP_CASTEiJ_G0028490.1 mouse_genomes_project 5 27318780 27330245 - MGP_CASTEiJ_P0070810 protein_coding protein_coding MGP_CASTEiJ_T0070811.1 MGP_CASTEiJ_G0028490.1 mouse_genomes_project 5 27319828 27330216 - MGP_CASTEiJ_P0070811 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070812.1 MGP_CASTEiJ_G0028490.1 mouse_genomes_project 5 27320435 27330250 - protein_coding retained_intron MGP_CASTEiJ_T0070813.1 MGP_CASTEiJ_G0028490.1 mouse_genomes_project 5 27320691 27330240 - MGP_CASTEiJ_P0070813 protein_coding protein_coding MGP_CASTEiJ_T0070814.1 MGP_CASTEiJ_G0028490.1 mouse_genomes_project 5 27324509 27330186 - protein_coding processed_transcript MGP_CASTEiJ_T0010414.1 MGP_CASTEiJ_G0008602.1 mouse_genomes_project 5 124073548 124073623 + Mir363 miRNA miRNA MGP_CASTEiJ_T0014621.1 MGP_CASTEiJ_G0012784.1 mouse_genomes_project 5 116514281 116514419 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001792.1 MGP_CASTEiJ_G0001714.1 mouse_genomes_project 5 134550007 134553048 - TEC TEC MGP_CASTEiJ_T0014466.1 MGP_CASTEiJ_G0012629.1 mouse_genomes_project 5 48985601 48986082 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075490.1 MGP_CASTEiJ_G0029351.1 mouse_genomes_project 5 140966163 140996283 - MGP_CASTEiJ_P0075490 Cyp3a13 protein_coding protein_coding MGP_CASTEiJ_T0007862.1 MGP_CASTEiJ_G0006433.1 mouse_genomes_project 5 21569434 21570014 + 2310074N15Rik lincRNA lincRNA MGP_CASTEiJ_T0017467.1 MGP_CASTEiJ_G0014936.1 mouse_genomes_project 5 154296962 154314011 + 4930500F04Rik processed_transcript lincRNA MGP_CASTEiJ_T0017468.1 MGP_CASTEiJ_G0014936.1 mouse_genomes_project 5 154297180 154314007 + 4930500F04Rik processed_transcript lincRNA MGP_CASTEiJ_T0017469.1 MGP_CASTEiJ_G0014936.1 mouse_genomes_project 5 154301494 154303601 + 4930500F04Rik processed_transcript retained_intron MGP_CASTEiJ_T0072951.1 MGP_CASTEiJ_G0028880.1 mouse_genomes_project 5 97226624 97228504 - MGP_CASTEiJ_P0072951 Gk2 protein_coding protein_coding MGP_CASTEiJ_T0008215.1 MGP_CASTEiJ_G0006678.1 mouse_genomes_project 5 143289337 143296127 + Gm42423 lincRNA lincRNA MGP_CASTEiJ_T0072714.1 MGP_CASTEiJ_G0028826.1 mouse_genomes_project 5 89755655 89967515 - MGP_CASTEiJ_P0072714 Adamts3 protein_coding protein_coding MGP_CASTEiJ_T0072715.1 MGP_CASTEiJ_G0028826.1 mouse_genomes_project 5 89755655 89967515 - MGP_CASTEiJ_P0072715 Adamts3 protein_coding protein_coding MGP_CASTEiJ_T0072716.1 MGP_CASTEiJ_G0028826.1 mouse_genomes_project 5 89918615 89967914 - MGP_CASTEiJ_P0072716 Adamts3 protein_coding protein_coding MGP_CASTEiJ_T0072717.1 MGP_CASTEiJ_G0028826.1 mouse_genomes_project 5 89943160 89966727 - Adamts3 protein_coding processed_transcript MGP_CASTEiJ_T0001603.1 MGP_CASTEiJ_G0001527.1 mouse_genomes_project 5 66260924 66263337 + TEC TEC MGP_CASTEiJ_T0004618.1 MGP_CASTEiJ_G0003999.1 mouse_genomes_project 5 99970366 99989502 + Tmem150cos antisense antisense MGP_CASTEiJ_T0004619.1 MGP_CASTEiJ_G0003999.1 mouse_genomes_project 5 99986254 99989626 + Tmem150cos antisense antisense MGP_CASTEiJ_T0102339.1 MGP_CASTEiJ_G0039064.1 mouse_genomes_project 5 12570325 12571358 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0074107.1 MGP_CASTEiJ_G0029114.1 mouse_genomes_project 5 122374652 122380571 - MGP_CASTEiJ_P0074107 Cfap73 protein_coding protein_coding MGP_CASTEiJ_T0074062.1 MGP_CASTEiJ_G0029104.1 mouse_genomes_project 5 121794541 121882621 + MGP_CASTEiJ_P0074062 Rbm19 protein_coding protein_coding MGP_CASTEiJ_T0074063.1 MGP_CASTEiJ_G0029104.1 mouse_genomes_project 5 121794593 121797057 + Rbm19 protein_coding retained_intron MGP_CASTEiJ_T0074064.1 MGP_CASTEiJ_G0029104.1 mouse_genomes_project 5 121794596 121882619 + MGP_CASTEiJ_P0074064 Rbm19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074065.1 MGP_CASTEiJ_G0029104.1 mouse_genomes_project 5 121796671 121798386 + Rbm19 protein_coding retained_intron MGP_CASTEiJ_T0074066.1 MGP_CASTEiJ_G0029104.1 mouse_genomes_project 5 121836993 121882611 + Rbm19 protein_coding processed_transcript MGP_CASTEiJ_T0074067.1 MGP_CASTEiJ_G0029104.1 mouse_genomes_project 5 121845529 121881833 + Rbm19 protein_coding processed_transcript MGP_CASTEiJ_T0074068.1 MGP_CASTEiJ_G0029104.1 mouse_genomes_project 5 121851223 121869926 + Rbm19 protein_coding processed_transcript MGP_CASTEiJ_T0074069.1 MGP_CASTEiJ_G0029104.1 mouse_genomes_project 5 121852817 121882617 + Rbm19 protein_coding processed_transcript MGP_CASTEiJ_T0074070.1 MGP_CASTEiJ_G0029104.1 mouse_genomes_project 5 121856048 121881630 + Rbm19 protein_coding processed_transcript MGP_CASTEiJ_T0074071.1 MGP_CASTEiJ_G0029104.1 mouse_genomes_project 5 121858672 121881609 + Rbm19 protein_coding processed_transcript MGP_CASTEiJ_T0073761.1 MGP_CASTEiJ_G0029046.1 mouse_genomes_project 5 115834118 115856333 - MGP_CASTEiJ_P0073761 Gltp protein_coding protein_coding MGP_CASTEiJ_T0073762.1 MGP_CASTEiJ_G0029046.1 mouse_genomes_project 5 115834818 115856290 - MGP_CASTEiJ_P0073762 Gltp protein_coding protein_coding MGP_CASTEiJ_T0073763.1 MGP_CASTEiJ_G0029046.1 mouse_genomes_project 5 115834966 115856257 - MGP_CASTEiJ_P0073763 Gltp protein_coding protein_coding MGP_CASTEiJ_T0001514.1 MGP_CASTEiJ_G0001439.1 mouse_genomes_project 5 46956773 46961231 - TEC TEC MGP_CASTEiJ_T0008133.1 MGP_CASTEiJ_G0006627.1 mouse_genomes_project 5 121268529 121278964 + Gm16063 lincRNA lincRNA MGP_CASTEiJ_T0099907.1 MGP_CASTEiJ_G0036820.1 mouse_genomes_project 5 106570318 106570425 - Gm25672 snRNA snRNA MGP_CASTEiJ_T0014476.1 MGP_CASTEiJ_G0012639.1 mouse_genomes_project 5 55475949 55477323 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008057.1 MGP_CASTEiJ_G0006580.1 mouse_genomes_project 5 109029843 109033523 + Gm43082 lincRNA lincRNA MGP_CASTEiJ_T0099870.1 MGP_CASTEiJ_G0036783.1 mouse_genomes_project 5 29514640 29514747 + Gm26335 snRNA snRNA MGP_CASTEiJ_T0004559.1 MGP_CASTEiJ_G0003954.1 mouse_genomes_project 5 43453109 43458173 + 9630001P10Rik antisense antisense MGP_CASTEiJ_T0004560.1 MGP_CASTEiJ_G0003954.1 mouse_genomes_project 5 43453685 43459880 + 9630001P10Rik antisense antisense MGP_CASTEiJ_T0004561.1 MGP_CASTEiJ_G0003954.1 mouse_genomes_project 5 43453779 43458492 + 9630001P10Rik antisense antisense MGP_CASTEiJ_T0008056.1 MGP_CASTEiJ_G0006579.1 mouse_genomes_project 5 108326812 108332318 - 4930428O21Rik lincRNA lincRNA MGP_CASTEiJ_T0074555.1 MGP_CASTEiJ_G0029186.1 mouse_genomes_project 5 126063093 126105686 + MGP_CASTEiJ_P0074555 Ccdc62 protein_coding protein_coding MGP_CASTEiJ_T0074556.1 MGP_CASTEiJ_G0029186.1 mouse_genomes_project 5 126063103 126070321 + Ccdc62 protein_coding retained_intron MGP_CASTEiJ_T0074557.1 MGP_CASTEiJ_G0029186.1 mouse_genomes_project 5 126063103 126105686 + MGP_CASTEiJ_P0074557 Ccdc62 protein_coding protein_coding MGP_CASTEiJ_T0074558.1 MGP_CASTEiJ_G0029186.1 mouse_genomes_project 5 126077062 126085210 + Ccdc62 protein_coding processed_transcript MGP_CASTEiJ_T0074559.1 MGP_CASTEiJ_G0029186.1 mouse_genomes_project 5 126085187 126088992 + Ccdc62 protein_coding retained_intron MGP_CASTEiJ_T0074560.1 MGP_CASTEiJ_G0029186.1 mouse_genomes_project 5 126095502 126099819 + Ccdc62 protein_coding retained_intron MGP_CASTEiJ_T0001527.1 MGP_CASTEiJ_G0001452.1 mouse_genomes_project 5 49443905 49445467 - TEC TEC MGP_CASTEiJ_T0014437.1 MGP_CASTEiJ_G0012600.1 mouse_genomes_project 5 31557503 31557834 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099901.1 MGP_CASTEiJ_G0036814.1 mouse_genomes_project 5 95578893 95579000 + Gm25937 snRNA snRNA MGP_CASTEiJ_T0070630.1 MGP_CASTEiJ_G0028453.1 mouse_genomes_project 5 21559964 21566719 - MGP_CASTEiJ_P0070630 Fastk protein_coding protein_coding MGP_CASTEiJ_T0070631.1 MGP_CASTEiJ_G0028453.1 mouse_genomes_project 5 21559965 21566711 - Fastk protein_coding retained_intron MGP_CASTEiJ_T0070633.1 MGP_CASTEiJ_G0028453.1 mouse_genomes_project 5 21562566 21563743 - Fastk protein_coding retained_intron MGP_CASTEiJ_T0070634.1 MGP_CASTEiJ_G0028453.1 mouse_genomes_project 5 21562566 21566731 - MGP_CASTEiJ_P0070634 Fastk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070635.1 MGP_CASTEiJ_G0028453.1 mouse_genomes_project 5 21562566 21566812 - MGP_CASTEiJ_P0070635 Fastk protein_coding protein_coding MGP_CASTEiJ_T0070636.1 MGP_CASTEiJ_G0028453.1 mouse_genomes_project 5 21562567 21566712 - Fastk protein_coding retained_intron MGP_CASTEiJ_T0070637.1 MGP_CASTEiJ_G0028453.1 mouse_genomes_project 5 21562567 21563052 - Fastk protein_coding retained_intron MGP_CASTEiJ_T0070638.1 MGP_CASTEiJ_G0028453.1 mouse_genomes_project 5 21562570 21566733 - MGP_CASTEiJ_P0070638 Fastk protein_coding protein_coding MGP_CASTEiJ_T0070639.1 MGP_CASTEiJ_G0028453.1 mouse_genomes_project 5 21563055 21563629 - Fastk protein_coding retained_intron MGP_CASTEiJ_T0070640.1 MGP_CASTEiJ_G0028453.1 mouse_genomes_project 5 21563147 21563826 - Fastk protein_coding processed_transcript MGP_CASTEiJ_T0070641.1 MGP_CASTEiJ_G0028453.1 mouse_genomes_project 5 21563451 21565484 - Fastk protein_coding retained_intron MGP_CASTEiJ_T0070642.1 MGP_CASTEiJ_G0028453.1 mouse_genomes_project 5 21563598 21566763 - Fastk protein_coding processed_transcript MGP_CASTEiJ_T0070643.1 MGP_CASTEiJ_G0028453.1 mouse_genomes_project 5 21564826 21566733 - Fastk protein_coding retained_intron MGP_CASTEiJ_T0070644.1 MGP_CASTEiJ_G0028453.1 mouse_genomes_project 5 21564894 21566722 - Fastk protein_coding processed_transcript MGP_CASTEiJ_T0070645.1 MGP_CASTEiJ_G0028453.1 mouse_genomes_project 5 21565456 21566722 - Fastk protein_coding processed_transcript MGP_CASTEiJ_T0071249.1 MGP_CASTEiJ_G0028559.1 mouse_genomes_project 5 31117980 31133386 + MGP_CASTEiJ_P0071249 Tacc3 protein_coding protein_coding MGP_CASTEiJ_T0071250.1 MGP_CASTEiJ_G0028559.1 mouse_genomes_project 5 31117980 31141300 + MGP_CASTEiJ_P0071250 Tacc3 protein_coding protein_coding MGP_CASTEiJ_T0071251.1 MGP_CASTEiJ_G0028559.1 mouse_genomes_project 5 31118406 31124634 + MGP_CASTEiJ_P0071251 Tacc3 protein_coding protein_coding MGP_CASTEiJ_T0071252.1 MGP_CASTEiJ_G0028559.1 mouse_genomes_project 5 31118438 31133383 + MGP_CASTEiJ_P0071252 Tacc3 protein_coding protein_coding MGP_CASTEiJ_T0071253.1 MGP_CASTEiJ_G0028559.1 mouse_genomes_project 5 31118486 31121818 + Tacc3 protein_coding retained_intron MGP_CASTEiJ_T0071254.1 MGP_CASTEiJ_G0028559.1 mouse_genomes_project 5 31129859 31133386 + MGP_CASTEiJ_P0071254 Tacc3 protein_coding protein_coding MGP_CASTEiJ_T0071255.1 MGP_CASTEiJ_G0028559.1 mouse_genomes_project 5 31129922 31141290 + MGP_CASTEiJ_P0071255 Tacc3 protein_coding protein_coding MGP_CASTEiJ_T0074864.1 MGP_CASTEiJ_G0029242.1 mouse_genomes_project 5 132506952 132520113 - MGP_CASTEiJ_P0074864 Asl protein_coding protein_coding MGP_CASTEiJ_T0074865.1 MGP_CASTEiJ_G0029242.1 mouse_genomes_project 5 132507186 132510427 - MGP_CASTEiJ_P0074865 Asl protein_coding protein_coding MGP_CASTEiJ_T0074866.1 MGP_CASTEiJ_G0029242.1 mouse_genomes_project 5 132507187 132528627 - MGP_CASTEiJ_P0074866 Asl protein_coding protein_coding MGP_CASTEiJ_T0074867.1 MGP_CASTEiJ_G0029242.1 mouse_genomes_project 5 132507196 132522020 - MGP_CASTEiJ_P0074867 Asl protein_coding protein_coding MGP_CASTEiJ_T0074868.1 MGP_CASTEiJ_G0029242.1 mouse_genomes_project 5 132509157 132520032 - MGP_CASTEiJ_P0074868 Asl protein_coding protein_coding MGP_CASTEiJ_T0074869.1 MGP_CASTEiJ_G0029242.1 mouse_genomes_project 5 132512430 132520105 - Asl protein_coding processed_transcript MGP_CASTEiJ_T0074870.1 MGP_CASTEiJ_G0029242.1 mouse_genomes_project 5 132515459 132520049 - MGP_CASTEiJ_P0074870 Asl protein_coding protein_coding MGP_CASTEiJ_T0074871.1 MGP_CASTEiJ_G0029242.1 mouse_genomes_project 5 132518024 132520077 - Asl protein_coding retained_intron MGP_CASTEiJ_T0071570.1 MGP_CASTEiJ_G0028607.1 mouse_genomes_project 5 34872261 34905757 + MGP_CASTEiJ_P0071570 Crmp1 protein_coding protein_coding MGP_CASTEiJ_T0071571.1 MGP_CASTEiJ_G0028607.1 mouse_genomes_project 5 34872406 34928964 + MGP_CASTEiJ_P0071571 Crmp1 protein_coding protein_coding MGP_CASTEiJ_T0071572.1 MGP_CASTEiJ_G0028607.1 mouse_genomes_project 5 34873061 34915192 + MGP_CASTEiJ_P0071572 Crmp1 protein_coding protein_coding MGP_CASTEiJ_T0071573.1 MGP_CASTEiJ_G0028607.1 mouse_genomes_project 5 34876093 34928932 + MGP_CASTEiJ_P0071573 Crmp1 protein_coding protein_coding MGP_CASTEiJ_T0071574.1 MGP_CASTEiJ_G0028607.1 mouse_genomes_project 5 34876174 34902568 + Crmp1 protein_coding retained_intron MGP_CASTEiJ_T0071575.1 MGP_CASTEiJ_G0028607.1 mouse_genomes_project 5 34880467 34915887 + MGP_CASTEiJ_P0071575 Crmp1 protein_coding protein_coding MGP_CASTEiJ_T0071576.1 MGP_CASTEiJ_G0028607.1 mouse_genomes_project 5 34905712 34913783 + Crmp1 protein_coding retained_intron MGP_CASTEiJ_T0071577.1 MGP_CASTEiJ_G0028607.1 mouse_genomes_project 5 34916762 34920177 + Crmp1 protein_coding retained_intron MGP_CASTEiJ_T0071578.1 MGP_CASTEiJ_G0028607.1 mouse_genomes_project 5 34917421 34919685 + Crmp1 protein_coding retained_intron MGP_CASTEiJ_T0071579.1 MGP_CASTEiJ_G0028607.1 mouse_genomes_project 5 34920878 34923511 + Crmp1 protein_coding retained_intron MGP_CASTEiJ_T0074153.1 MGP_CASTEiJ_G0029126.1 mouse_genomes_project 5 123090505 123257498 + MGP_CASTEiJ_P0074153 Gm15800 protein_coding protein_coding MGP_CASTEiJ_T0074154.1 MGP_CASTEiJ_G0029126.1 mouse_genomes_project 5 123165754 123188095 + MGP_CASTEiJ_P0074154 Gm15800 protein_coding protein_coding MGP_CASTEiJ_T0074155.1 MGP_CASTEiJ_G0029126.1 mouse_genomes_project 5 123166357 123188678 + Gm15800 protein_coding retained_intron MGP_CASTEiJ_T0074156.1 MGP_CASTEiJ_G0029126.1 mouse_genomes_project 5 123170758 123183099 + MGP_CASTEiJ_P0074156 Gm15800 protein_coding protein_coding MGP_CASTEiJ_T0074157.1 MGP_CASTEiJ_G0029126.1 mouse_genomes_project 5 123189363 123209140 + MGP_CASTEiJ_P0074157 Gm15800 protein_coding protein_coding MGP_CASTEiJ_T0074158.1 MGP_CASTEiJ_G0029126.1 mouse_genomes_project 5 123200079 123202968 + Gm15800 protein_coding processed_transcript MGP_CASTEiJ_T0074159.1 MGP_CASTEiJ_G0029126.1 mouse_genomes_project 5 123204316 123207097 + Gm15800 protein_coding processed_transcript MGP_CASTEiJ_T0073979.1 MGP_CASTEiJ_G0029088.1 mouse_genomes_project 5 118550067 118717793 + MGP_CASTEiJ_P0073979 Taok3 protein_coding protein_coding MGP_CASTEiJ_T0073980.1 MGP_CASTEiJ_G0029088.1 mouse_genomes_project 5 118556257 118636040 + MGP_CASTEiJ_P0073980 Taok3 protein_coding protein_coding MGP_CASTEiJ_T0073981.1 MGP_CASTEiJ_G0029088.1 mouse_genomes_project 5 118563137 118628074 + Taok3 protein_coding retained_intron MGP_CASTEiJ_T0073982.1 MGP_CASTEiJ_G0029088.1 mouse_genomes_project 5 118563137 118717651 + MGP_CASTEiJ_P0073982 Taok3 protein_coding protein_coding MGP_CASTEiJ_T0073983.1 MGP_CASTEiJ_G0029088.1 mouse_genomes_project 5 118563144 118717795 + MGP_CASTEiJ_P0073983 Taok3 protein_coding protein_coding MGP_CASTEiJ_T0073984.1 MGP_CASTEiJ_G0029088.1 mouse_genomes_project 5 118563164 118677191 + Taok3 protein_coding retained_intron MGP_CASTEiJ_T0073985.1 MGP_CASTEiJ_G0029088.1 mouse_genomes_project 5 118563167 118691331 + MGP_CASTEiJ_P0073985 Taok3 protein_coding protein_coding MGP_CASTEiJ_T0073986.1 MGP_CASTEiJ_G0029088.1 mouse_genomes_project 5 118563190 118620202 + Taok3 protein_coding retained_intron MGP_CASTEiJ_T0073987.1 MGP_CASTEiJ_G0029088.1 mouse_genomes_project 5 118636021 118662611 + MGP_CASTEiJ_P0073987 Taok3 protein_coding protein_coding MGP_CASTEiJ_T0073988.1 MGP_CASTEiJ_G0029088.1 mouse_genomes_project 5 118676202 118716443 + MGP_CASTEiJ_P0073988 Taok3 protein_coding protein_coding MGP_CASTEiJ_T0070828.1 MGP_CASTEiJ_G0028494.1 mouse_genomes_project 5 27419189 27450253 + MGP_CASTEiJ_P0070828 Hadhb protein_coding protein_coding MGP_CASTEiJ_T0070829.1 MGP_CASTEiJ_G0028494.1 mouse_genomes_project 5 27419199 27441036 + MGP_CASTEiJ_P0070829 Hadhb protein_coding protein_coding MGP_CASTEiJ_T0070830.1 MGP_CASTEiJ_G0028494.1 mouse_genomes_project 5 27419213 27450249 + MGP_CASTEiJ_P0070830 Hadhb protein_coding protein_coding MGP_CASTEiJ_T0070831.1 MGP_CASTEiJ_G0028494.1 mouse_genomes_project 5 27419213 27450242 + MGP_CASTEiJ_P0070831 Hadhb protein_coding protein_coding MGP_CASTEiJ_T0070832.1 MGP_CASTEiJ_G0028494.1 mouse_genomes_project 5 27419216 27432839 + Hadhb protein_coding retained_intron MGP_CASTEiJ_T0070833.1 MGP_CASTEiJ_G0028494.1 mouse_genomes_project 5 27419244 27443036 + MGP_CASTEiJ_P0070833 Hadhb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070834.1 MGP_CASTEiJ_G0028494.1 mouse_genomes_project 5 27441040 27445231 + Hadhb protein_coding retained_intron MGP_CASTEiJ_T0070835.1 MGP_CASTEiJ_G0028494.1 mouse_genomes_project 5 27444697 27447143 + Hadhb protein_coding retained_intron MGP_CASTEiJ_T0070836.1 MGP_CASTEiJ_G0028494.1 mouse_genomes_project 5 27446388 27449896 + Hadhb protein_coding retained_intron MGP_CASTEiJ_T0008187.1 MGP_CASTEiJ_G0006660.1 mouse_genomes_project 5 130910461 130911958 - 4930573I07Rik lincRNA lincRNA MGP_CASTEiJ_T0008188.1 MGP_CASTEiJ_G0006660.1 mouse_genomes_project 5 130910463 130911980 - 4930573I07Rik lincRNA lincRNA MGP_CASTEiJ_T0001610.1 MGP_CASTEiJ_G0001534.1 mouse_genomes_project 5 66841726 66845186 + TEC TEC MGP_CASTEiJ_T0075957.1 MGP_CASTEiJ_G0029453.1 mouse_genomes_project 5 148526532 148557071 - MGP_CASTEiJ_P0075957 Tmem130 protein_coding protein_coding MGP_CASTEiJ_T0075958.1 MGP_CASTEiJ_G0029453.1 mouse_genomes_project 5 148546715 148557240 - Tmem130 protein_coding processed_transcript MGP_CASTEiJ_T0101104.1 MGP_CASTEiJ_G0038017.1 mouse_genomes_project 5 18128151 18128270 - Gm22490 snoRNA snoRNA MGP_CASTEiJ_T0001419.1 MGP_CASTEiJ_G0001348.1 mouse_genomes_project 5 21266634 21269223 + TEC TEC MGP_CASTEiJ_T0001440.1 MGP_CASTEiJ_G0001367.1 mouse_genomes_project 5 29466097 29469006 - TEC TEC MGP_CASTEiJ_T0001441.1 MGP_CASTEiJ_G0001367.1 mouse_genomes_project 5 29466097 29469003 - TEC TEC MGP_CASTEiJ_T0075322.1 MGP_CASTEiJ_G0029319.1 mouse_genomes_project 5 140040176 140051284 - MGP_CASTEiJ_P0075322 Ap1s1 protein_coding protein_coding MGP_CASTEiJ_T0075323.1 MGP_CASTEiJ_G0029319.1 mouse_genomes_project 5 140040525 140042828 - Ap1s1 protein_coding retained_intron MGP_CASTEiJ_T0075324.1 MGP_CASTEiJ_G0029319.1 mouse_genomes_project 5 140042556 140050944 - MGP_CASTEiJ_P0075324 Ap1s1 protein_coding protein_coding MGP_CASTEiJ_T0075325.1 MGP_CASTEiJ_G0029319.1 mouse_genomes_project 5 140042573 140051191 - MGP_CASTEiJ_P0075325 Ap1s1 protein_coding protein_coding MGP_CASTEiJ_T0075326.1 MGP_CASTEiJ_G0029319.1 mouse_genomes_project 5 140048189 140050556 - MGP_CASTEiJ_P0075326 Ap1s1 protein_coding protein_coding MGP_CASTEiJ_T0075327.1 MGP_CASTEiJ_G0029320.1 mouse_genomes_project 5 140067629 140082144 - MGP_CASTEiJ_P0075327 Serpine1 protein_coding protein_coding MGP_CASTEiJ_T0075328.1 MGP_CASTEiJ_G0029320.1 mouse_genomes_project 5 140067637 140082139 - MGP_CASTEiJ_P0075328 Serpine1 protein_coding protein_coding MGP_CASTEiJ_T0075329.1 MGP_CASTEiJ_G0029320.1 mouse_genomes_project 5 140080056 140082153 - Serpine1 protein_coding retained_intron MGP_CASTEiJ_T0099934.1 MGP_CASTEiJ_G0036847.1 mouse_genomes_project 5 155064289 155064387 - Gm23641 snRNA snRNA MGP_CASTEiJ_T0072410.1 MGP_CASTEiJ_G0028748.1 mouse_genomes_project 5 75347735 75359226 + Srd5a3 protein_coding retained_intron MGP_CASTEiJ_T0072411.1 MGP_CASTEiJ_G0028748.1 mouse_genomes_project 5 75347770 75348327 + Srd5a3 protein_coding processed_transcript MGP_CASTEiJ_T0072412.1 MGP_CASTEiJ_G0028748.1 mouse_genomes_project 5 75347792 75365090 + MGP_CASTEiJ_P0072412 Srd5a3 protein_coding protein_coding MGP_CASTEiJ_T0072413.1 MGP_CASTEiJ_G0028748.1 mouse_genomes_project 5 75348164 75357510 + MGP_CASTEiJ_P0072413 Srd5a3 protein_coding protein_coding MGP_CASTEiJ_T0072414.1 MGP_CASTEiJ_G0028748.1 mouse_genomes_project 5 75354418 75364859 + MGP_CASTEiJ_P0072414 Srd5a3 protein_coding protein_coding MGP_CASTEiJ_T0072415.1 MGP_CASTEiJ_G0028748.1 mouse_genomes_project 5 75362436 75365119 + Srd5a3 protein_coding retained_intron MGP_CASTEiJ_T0070690.1 MGP_CASTEiJ_G0028464.1 mouse_genomes_project 5 21913590 21913993 - Crygn protein_coding processed_transcript MGP_CASTEiJ_T0070691.1 MGP_CASTEiJ_G0028464.1 mouse_genomes_project 5 21913590 21921729 - MGP_CASTEiJ_P0070691 Crygn protein_coding protein_coding MGP_CASTEiJ_T0101627.1 MGP_CASTEiJ_G0038482.1 mouse_genomes_project 5 87807713 87810381 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101628.1 MGP_CASTEiJ_G0038482.1 mouse_genomes_project 5 87807872 87809001 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0076233.1 MGP_CASTEiJ_G0029505.1 mouse_genomes_project 5 154478171 154536366 + Rxfp2 protein_coding retained_intron MGP_CASTEiJ_T0076234.1 MGP_CASTEiJ_G0029505.1 mouse_genomes_project 5 154478171 154551844 + MGP_CASTEiJ_P0076234 Rxfp2 protein_coding protein_coding MGP_CASTEiJ_T0076235.1 MGP_CASTEiJ_G0029505.1 mouse_genomes_project 5 154478171 154551844 + MGP_CASTEiJ_P0076235 Rxfp2 protein_coding protein_coding MGP_CASTEiJ_T0076236.1 MGP_CASTEiJ_G0029505.1 mouse_genomes_project 5 154478202 154551836 + MGP_CASTEiJ_P0076236 Rxfp2 protein_coding protein_coding MGP_CASTEiJ_T0076237.1 MGP_CASTEiJ_G0029505.1 mouse_genomes_project 5 154534196 154537691 + Rxfp2 protein_coding retained_intron MGP_CASTEiJ_T0076238.1 MGP_CASTEiJ_G0029505.1 mouse_genomes_project 5 154551192 154552693 + Rxfp2 protein_coding processed_transcript MGP_CASTEiJ_T0071933.1 MGP_CASTEiJ_G0028668.1 mouse_genomes_project 5 61074553 61085312 - Arap2 protein_coding retained_intron MGP_CASTEiJ_T0071934.1 MGP_CASTEiJ_G0028668.1 mouse_genomes_project 5 61074553 61253241 - MGP_CASTEiJ_P0071934 Arap2 protein_coding protein_coding MGP_CASTEiJ_T0071935.1 MGP_CASTEiJ_G0028668.1 mouse_genomes_project 5 61109710 61114515 - Arap2 protein_coding retained_intron MGP_CASTEiJ_T0071936.1 MGP_CASTEiJ_G0028668.1 mouse_genomes_project 5 61117809 61121825 - Arap2 protein_coding retained_intron MGP_CASTEiJ_T0071937.1 MGP_CASTEiJ_G0028668.1 mouse_genomes_project 5 61158388 61165035 - Arap2 protein_coding retained_intron MGP_CASTEiJ_T0071938.1 MGP_CASTEiJ_G0028668.1 mouse_genomes_project 5 61189160 61215012 - Arap2 protein_coding processed_transcript MGP_CASTEiJ_T0014609.1 MGP_CASTEiJ_G0012772.1 mouse_genomes_project 5 111317468 111318915 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076086.1 MGP_CASTEiJ_G0029480.1 mouse_genomes_project 5 151118938 151132538 - MGP_CASTEiJ_P0076086 Mtif3 protein_coding protein_coding MGP_CASTEiJ_T0076087.1 MGP_CASTEiJ_G0029480.1 mouse_genomes_project 5 151121894 151132540 - MGP_CASTEiJ_P0076087 Mtif3 protein_coding protein_coding MGP_CASTEiJ_T0076088.1 MGP_CASTEiJ_G0029480.1 mouse_genomes_project 5 151122741 151132502 - MGP_CASTEiJ_P0076088 Mtif3 protein_coding protein_coding MGP_CASTEiJ_T0076089.1 MGP_CASTEiJ_G0029480.1 mouse_genomes_project 5 151122741 151132550 - MGP_CASTEiJ_P0076089 Mtif3 protein_coding protein_coding MGP_CASTEiJ_T0076090.1 MGP_CASTEiJ_G0029480.1 mouse_genomes_project 5 151127689 151132496 - MGP_CASTEiJ_P0076090 Mtif3 protein_coding protein_coding MGP_CASTEiJ_T0076091.1 MGP_CASTEiJ_G0029480.1 mouse_genomes_project 5 151127700 151132553 - MGP_CASTEiJ_P0076091 Mtif3 protein_coding protein_coding MGP_CASTEiJ_T0008217.1 MGP_CASTEiJ_G0006680.1 mouse_genomes_project 5 146851564 146852490 - Rbakdn lincRNA lincRNA MGP_CASTEiJ_T0008218.1 MGP_CASTEiJ_G0006680.1 mouse_genomes_project 5 146851564 146852537 - Rbakdn lincRNA lincRNA MGP_CASTEiJ_T0017406.1 MGP_CASTEiJ_G0014917.1 mouse_genomes_project 5 63292359 63404147 - Gm20033 processed_transcript antisense MGP_CASTEiJ_T0017407.1 MGP_CASTEiJ_G0014917.1 mouse_genomes_project 5 63292363 63293131 - Gm20033 processed_transcript retained_intron MGP_CASTEiJ_T0017408.1 MGP_CASTEiJ_G0014917.1 mouse_genomes_project 5 63292475 63302262 - Gm20033 processed_transcript retained_intron MGP_CASTEiJ_T0017409.1 MGP_CASTEiJ_G0014917.1 mouse_genomes_project 5 63293935 63311830 - Gm20033 processed_transcript processed_transcript MGP_CASTEiJ_T0017410.1 MGP_CASTEiJ_G0014917.1 mouse_genomes_project 5 63401591 63403864 - Gm20033 processed_transcript retained_intron MGP_CASTEiJ_T0017411.1 MGP_CASTEiJ_G0014917.1 mouse_genomes_project 5 63401687 63404146 - Gm20033 processed_transcript antisense MGP_CASTEiJ_T0001484.1 MGP_CASTEiJ_G0001410.1 mouse_genomes_project 5 42453036 42456319 - TEC TEC MGP_CASTEiJ_T0011278.1 MGP_CASTEiJ_G0009466.1 mouse_genomes_project 5 113165369 113165519 - Gm27627 misc_RNA misc_RNA MGP_CASTEiJ_T0001385.1 MGP_CASTEiJ_G0001314.1 mouse_genomes_project 5 5323402 5325466 - TEC TEC MGP_CASTEiJ_T0071944.1 MGP_CASTEiJ_G0028671.1 mouse_genomes_project 5 62359190 62442798 + MGP_CASTEiJ_P0071944 0610040J01Rik protein_coding protein_coding MGP_CASTEiJ_T0071945.1 MGP_CASTEiJ_G0028671.1 mouse_genomes_project 5 62359347 62441740 + MGP_CASTEiJ_P0071945 0610040J01Rik protein_coding protein_coding MGP_CASTEiJ_T0071946.1 MGP_CASTEiJ_G0028671.1 mouse_genomes_project 5 62419688 62441439 + MGP_CASTEiJ_P0071946 0610040J01Rik protein_coding protein_coding MGP_CASTEiJ_T0071947.1 MGP_CASTEiJ_G0028671.1 mouse_genomes_project 5 62420856 62441702 + MGP_CASTEiJ_P0071947 0610040J01Rik protein_coding protein_coding MGP_CASTEiJ_T0010419.1 MGP_CASTEiJ_G0008607.1 mouse_genomes_project 5 127681270 127681347 + Gm27551 miRNA miRNA MGP_CASTEiJ_T0014438.1 MGP_CASTEiJ_G0012601.1 mouse_genomes_project 5 31779379 31779838 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075072.1 MGP_CASTEiJ_G0029273.1 mouse_genomes_project 5 137875082 137901314 + MGP_CASTEiJ_P0075072 Stx1a protein_coding protein_coding MGP_CASTEiJ_T0075073.1 MGP_CASTEiJ_G0029273.1 mouse_genomes_project 5 137875107 137896332 + MGP_CASTEiJ_P0075073 Stx1a protein_coding protein_coding MGP_CASTEiJ_T0075074.1 MGP_CASTEiJ_G0029273.1 mouse_genomes_project 5 137875160 137901314 + MGP_CASTEiJ_P0075074 Stx1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075075.1 MGP_CASTEiJ_G0029273.1 mouse_genomes_project 5 137888568 137899337 + Stx1a protein_coding processed_transcript MGP_CASTEiJ_T0075076.1 MGP_CASTEiJ_G0029273.1 mouse_genomes_project 5 137892131 137901313 + Stx1a protein_coding retained_intron MGP_CASTEiJ_T0075077.1 MGP_CASTEiJ_G0029273.1 mouse_genomes_project 5 137892339 137899446 + Stx1a protein_coding processed_transcript MGP_CASTEiJ_T0017455.1 MGP_CASTEiJ_G0014933.1 mouse_genomes_project 5 153292695 153300855 - 1810059H22Rik processed_transcript lincRNA MGP_CASTEiJ_T0017456.1 MGP_CASTEiJ_G0014933.1 mouse_genomes_project 5 153293626 153295475 - 1810059H22Rik processed_transcript retained_intron MGP_CASTEiJ_T0017457.1 MGP_CASTEiJ_G0014933.1 mouse_genomes_project 5 153299241 153300349 - 1810059H22Rik processed_transcript lincRNA MGP_CASTEiJ_T0017458.1 MGP_CASTEiJ_G0014933.1 mouse_genomes_project 5 153299313 153313011 - 1810059H22Rik processed_transcript lincRNA MGP_CASTEiJ_T0017459.1 MGP_CASTEiJ_G0014933.1 mouse_genomes_project 5 153299532 153300325 - 1810059H22Rik processed_transcript retained_intron MGP_CASTEiJ_T0017460.1 MGP_CASTEiJ_G0014933.1 mouse_genomes_project 5 153299775 153307451 - 1810059H22Rik processed_transcript retained_intron MGP_CASTEiJ_T0017461.1 MGP_CASTEiJ_G0014933.1 mouse_genomes_project 5 153307111 153313025 - 1810059H22Rik processed_transcript lincRNA MGP_CASTEiJ_T0017462.1 MGP_CASTEiJ_G0014933.1 mouse_genomes_project 5 153307936 153313251 - 1810059H22Rik processed_transcript lincRNA MGP_CASTEiJ_T0008246.1 MGP_CASTEiJ_G0006704.1 mouse_genomes_project 5 153356139 153361955 + Gm15408 lincRNA lincRNA MGP_CASTEiJ_T0001621.1 MGP_CASTEiJ_G0001545.1 mouse_genomes_project 5 71770776 71772906 - TEC TEC MGP_CASTEiJ_T0014610.1 MGP_CASTEiJ_G0012773.1 mouse_genomes_project 5 111534844 111536536 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014536.1 MGP_CASTEiJ_G0012699.1 mouse_genomes_project 5 84374251 84375365 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008086.1 MGP_CASTEiJ_G0006595.1 mouse_genomes_project 5 113104191 113116324 + Gm42491 lincRNA lincRNA MGP_CASTEiJ_T0098606.1 MGP_CASTEiJ_G0035537.1 mouse_genomes_project 5 441448 441568 + n-R5s169 rRNA rRNA MGP_CASTEiJ_T0008119.1 MGP_CASTEiJ_G0006615.1 mouse_genomes_project 5 117749846 117751978 - 4930562A09Rik lincRNA lincRNA MGP_CASTEiJ_T0071742.1 MGP_CASTEiJ_G0028637.1 mouse_genomes_project 5 41905804 41956565 - MGP_CASTEiJ_P0071742 Tapt1 protein_coding protein_coding MGP_CASTEiJ_T0071743.1 MGP_CASTEiJ_G0028637.1 mouse_genomes_project 5 41905809 41956560 - MGP_CASTEiJ_P0071743 Tapt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071744.1 MGP_CASTEiJ_G0028637.1 mouse_genomes_project 5 41907147 41913440 - Tapt1 protein_coding retained_intron MGP_CASTEiJ_T0071745.1 MGP_CASTEiJ_G0028637.1 mouse_genomes_project 5 41914833 41921511 - Tapt1 protein_coding retained_intron MGP_CASTEiJ_T0071746.1 MGP_CASTEiJ_G0028637.1 mouse_genomes_project 5 41919274 41948178 - MGP_CASTEiJ_P0071746 Tapt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071747.1 MGP_CASTEiJ_G0028637.1 mouse_genomes_project 5 41919289 41933779 - Tapt1 protein_coding retained_intron MGP_CASTEiJ_T0071748.1 MGP_CASTEiJ_G0028637.1 mouse_genomes_project 5 41921792 41933949 - Tapt1 protein_coding retained_intron MGP_CASTEiJ_T0071749.1 MGP_CASTEiJ_G0028637.1 mouse_genomes_project 5 41947796 41956569 - Tapt1 protein_coding retained_intron MGP_CASTEiJ_T0072991.1 MGP_CASTEiJ_G0028892.1 mouse_genomes_project 5 99922561 99925053 - Hnrnpdl protein_coding processed_transcript MGP_CASTEiJ_T0072992.1 MGP_CASTEiJ_G0028892.1 mouse_genomes_project 5 99922561 99928202 - MGP_CASTEiJ_P0072992 Hnrnpdl protein_coding protein_coding MGP_CASTEiJ_T0072993.1 MGP_CASTEiJ_G0028892.1 mouse_genomes_project 5 99923705 99927849 - MGP_CASTEiJ_P0072993 Hnrnpdl protein_coding protein_coding MGP_CASTEiJ_T0072994.1 MGP_CASTEiJ_G0028892.1 mouse_genomes_project 5 99923711 99928638 - MGP_CASTEiJ_P0072994 Hnrnpdl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072995.1 MGP_CASTEiJ_G0028892.1 mouse_genomes_project 5 99923812 99925710 - Hnrnpdl protein_coding retained_intron MGP_CASTEiJ_T0072996.1 MGP_CASTEiJ_G0028892.1 mouse_genomes_project 5 99924410 99927875 - MGP_CASTEiJ_P0072996 Hnrnpdl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072997.1 MGP_CASTEiJ_G0028892.1 mouse_genomes_project 5 99924944 99926107 - Hnrnpdl protein_coding retained_intron MGP_CASTEiJ_T0004497.1 MGP_CASTEiJ_G0003904.1 mouse_genomes_project 5 470139 471347 + 2510017J16Rik antisense antisense MGP_CASTEiJ_T0071715.1 MGP_CASTEiJ_G0028633.1 mouse_genomes_project 5 41537048 41546245 + MGP_CASTEiJ_P0071715 Bst1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071716.1 MGP_CASTEiJ_G0028633.1 mouse_genomes_project 5 41537054 41557477 + MGP_CASTEiJ_P0071716 Bst1 protein_coding protein_coding MGP_CASTEiJ_T0071717.1 MGP_CASTEiJ_G0028633.1 mouse_genomes_project 5 41541444 41556937 + Bst1 protein_coding retained_intron MGP_CASTEiJ_T0071718.1 MGP_CASTEiJ_G0028633.1 mouse_genomes_project 5 41549859 41555881 + Bst1 protein_coding retained_intron MGP_CASTEiJ_T0075447.1 MGP_CASTEiJ_G0029342.1 mouse_genomes_project 5 140689614 140691145 + MGP_CASTEiJ_P0075447 Sap25 protein_coding protein_coding MGP_CASTEiJ_T0075448.1 MGP_CASTEiJ_G0029342.1 mouse_genomes_project 5 140689717 140691179 + MGP_CASTEiJ_P0075448 Sap25 protein_coding protein_coding MGP_CASTEiJ_T0075449.1 MGP_CASTEiJ_G0029342.1 mouse_genomes_project 5 140689775 140690617 + Sap25 protein_coding retained_intron MGP_CASTEiJ_T0075450.1 MGP_CASTEiJ_G0029342.1 mouse_genomes_project 5 140690219 140690823 + Sap25 protein_coding retained_intron MGP_CASTEiJ_T0075451.1 MGP_CASTEiJ_G0029342.1 mouse_genomes_project 5 140690453 140691113 + Sap25 protein_coding retained_intron MGP_CASTEiJ_T0075452.1 MGP_CASTEiJ_G0029342.1 mouse_genomes_project 5 140690624 140691176 + Sap25 protein_coding retained_intron MGP_CASTEiJ_T0071346.1 MGP_CASTEiJ_G0028573.1 mouse_genomes_project 5 31974488 31992924 - MGP_CASTEiJ_P0071346 Tnip2 protein_coding protein_coding MGP_CASTEiJ_T0071347.1 MGP_CASTEiJ_G0028573.1 mouse_genomes_project 5 31974488 31992896 - MGP_CASTEiJ_P0071347 Tnip2 protein_coding protein_coding MGP_CASTEiJ_T0071348.1 MGP_CASTEiJ_G0028573.1 mouse_genomes_project 5 31974531 31992871 - MGP_CASTEiJ_P0071348 Tnip2 protein_coding protein_coding MGP_CASTEiJ_T0071349.1 MGP_CASTEiJ_G0028573.1 mouse_genomes_project 5 31978012 31980112 - Tnip2 protein_coding retained_intron MGP_CASTEiJ_T0071350.1 MGP_CASTEiJ_G0028573.1 mouse_genomes_project 5 31979665 31992782 - Tnip2 protein_coding retained_intron MGP_CASTEiJ_T0071351.1 MGP_CASTEiJ_G0028573.1 mouse_genomes_project 5 31981778 31992593 - Tnip2 protein_coding retained_intron MGP_CASTEiJ_T0008213.1 MGP_CASTEiJ_G0006676.1 mouse_genomes_project 5 140717609 142905425 + lincRNA lincRNA MGP_CASTEiJ_T0073145.1 MGP_CASTEiJ_G0028920.1 mouse_genomes_project 5 104271409 104281207 + MGP_CASTEiJ_P0073145 Dspp protein_coding protein_coding MGP_CASTEiJ_T0072932.1 MGP_CASTEiJ_G0028875.1 mouse_genomes_project 5 96513918 96542149 + MGP_CASTEiJ_P0072932 Anxa3 protein_coding protein_coding MGP_CASTEiJ_T0072933.1 MGP_CASTEiJ_G0028875.1 mouse_genomes_project 5 96513964 96572435 + MGP_CASTEiJ_P0072933 Anxa3 protein_coding protein_coding MGP_CASTEiJ_T0072934.1 MGP_CASTEiJ_G0028875.1 mouse_genomes_project 5 96514020 96550064 + MGP_CASTEiJ_P0072934 Anxa3 protein_coding protein_coding MGP_CASTEiJ_T0072935.1 MGP_CASTEiJ_G0028875.1 mouse_genomes_project 5 96514079 96550997 + MGP_CASTEiJ_P0072935 Anxa3 protein_coding protein_coding MGP_CASTEiJ_T0072936.1 MGP_CASTEiJ_G0028875.1 mouse_genomes_project 5 96533859 96560247 + Anxa3 protein_coding retained_intron MGP_CASTEiJ_T0072937.1 MGP_CASTEiJ_G0028875.1 mouse_genomes_project 5 96542040 96563060 + Anxa3 protein_coding retained_intron MGP_CASTEiJ_T0072938.1 MGP_CASTEiJ_G0028875.1 mouse_genomes_project 5 96553069 96555572 + Anxa3 protein_coding retained_intron MGP_CASTEiJ_T0072939.1 MGP_CASTEiJ_G0028875.1 mouse_genomes_project 5 96555166 96572151 + Anxa3 protein_coding retained_intron MGP_CASTEiJ_T0072940.1 MGP_CASTEiJ_G0028875.1 mouse_genomes_project 5 96568464 96572329 + MGP_CASTEiJ_P0072940 Anxa3 protein_coding protein_coding MGP_CASTEiJ_T0001423.1 MGP_CASTEiJ_G0001351.1 mouse_genomes_project 5 22911609 22913624 - TEC TEC MGP_CASTEiJ_T0014395.1 MGP_CASTEiJ_G0012558.1 mouse_genomes_project 5 21196267 21196752 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001818.1 MGP_CASTEiJ_G0001739.1 mouse_genomes_project 5 138341602 138343269 - TEC TEC MGP_CASTEiJ_T0071593.1 MGP_CASTEiJ_G0028610.1 mouse_genomes_project 5 35096553 35371993 - MGP_CASTEiJ_P0071593 Stk32b protein_coding protein_coding MGP_CASTEiJ_T0071594.1 MGP_CASTEiJ_G0028610.1 mouse_genomes_project 5 35134400 35371644 - MGP_CASTEiJ_P0071594 Stk32b protein_coding unknown_likely_coding MGP_CASTEiJ_T0017415.1 MGP_CASTEiJ_G0014919.1 mouse_genomes_project 5 66296900 66304367 + C330024D21Rik processed_transcript retained_intron MGP_CASTEiJ_T0017416.1 MGP_CASTEiJ_G0014919.1 mouse_genomes_project 5 66296903 66312974 + C330024D21Rik processed_transcript lincRNA MGP_CASTEiJ_T0017417.1 MGP_CASTEiJ_G0014919.1 mouse_genomes_project 5 66296906 66312639 + C330024D21Rik processed_transcript lincRNA MGP_CASTEiJ_T0075934.1 MGP_CASTEiJ_G0029446.1 mouse_genomes_project 5 147738449 147745057 - MGP_CASTEiJ_P0075934 Ocm protein_coding protein_coding MGP_CASTEiJ_T0075935.1 MGP_CASTEiJ_G0029446.1 mouse_genomes_project 5 147738721 147744158 - MGP_CASTEiJ_P0075935 Ocm protein_coding protein_coding MGP_CASTEiJ_T0075936.1 MGP_CASTEiJ_G0029446.1 mouse_genomes_project 5 147742936 147745128 - MGP_CASTEiJ_P0075936 Ocm protein_coding protein_coding MGP_CASTEiJ_T0004712.1 MGP_CASTEiJ_G0004065.1 mouse_genomes_project 5 134254561 134265711 + 2810432F15Rik antisense antisense MGP_CASTEiJ_T0074481.1 MGP_CASTEiJ_G0029176.1 mouse_genomes_project 5 125620616 125632872 - MGP_CASTEiJ_P0074481 Diablo protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074482.1 MGP_CASTEiJ_G0029176.1 mouse_genomes_project 5 125620915 125634162 - MGP_CASTEiJ_P0074482 Diablo protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074483.1 MGP_CASTEiJ_G0029176.1 mouse_genomes_project 5 125621344 125632850 - MGP_CASTEiJ_P0074483 Diablo protein_coding protein_coding MGP_CASTEiJ_T0074484.1 MGP_CASTEiJ_G0029176.1 mouse_genomes_project 5 125624644 125632866 - MGP_CASTEiJ_P0074484 Diablo protein_coding protein_coding MGP_CASTEiJ_T0074485.1 MGP_CASTEiJ_G0029176.1 mouse_genomes_project 5 125625105 125632863 - MGP_CASTEiJ_P0074485 Diablo protein_coding protein_coding MGP_CASTEiJ_T0074486.1 MGP_CASTEiJ_G0029176.1 mouse_genomes_project 5 125626429 125632863 - MGP_CASTEiJ_P0074486 Diablo protein_coding protein_coding MGP_CASTEiJ_T0074487.1 MGP_CASTEiJ_G0029176.1 mouse_genomes_project 5 125626779 125632221 - Diablo protein_coding retained_intron MGP_CASTEiJ_T0074488.1 MGP_CASTEiJ_G0029176.1 mouse_genomes_project 5 125626880 125629505 - Diablo protein_coding retained_intron MGP_CASTEiJ_T0074489.1 MGP_CASTEiJ_G0029176.1 mouse_genomes_project 5 125633227 125634221 - Diablo protein_coding processed_transcript MGP_CASTEiJ_T0075474.1 MGP_CASTEiJ_G0029347.1 mouse_genomes_project 5 140841798 140842712 + MGP_CASTEiJ_P0075474 Ppp1r35 protein_coding protein_coding MGP_CASTEiJ_T0075475.1 MGP_CASTEiJ_G0029347.1 mouse_genomes_project 5 140841853 140843057 + MGP_CASTEiJ_P0075475 Ppp1r35 protein_coding protein_coding MGP_CASTEiJ_T0075476.1 MGP_CASTEiJ_G0029347.1 mouse_genomes_project 5 140842386 140843053 + MGP_CASTEiJ_P0075476 Ppp1r35 protein_coding protein_coding MGP_CASTEiJ_T0075477.1 MGP_CASTEiJ_G0029347.1 mouse_genomes_project 5 140842493 140843057 + Ppp1r35 protein_coding retained_intron MGP_CASTEiJ_T0070423.1 MGP_CASTEiJ_G0028414.1 mouse_genomes_project 5 14678544 14727968 - MGP_CASTEiJ_P0070423 Cd36 protein_coding protein_coding MGP_CASTEiJ_T0070424.1 MGP_CASTEiJ_G0028414.1 mouse_genomes_project 5 14703539 14785049 - MGP_CASTEiJ_P0070424 Cd36 protein_coding protein_coding MGP_CASTEiJ_T0017418.1 MGP_CASTEiJ_G0014920.1 mouse_genomes_project 5 73068894 73069460 + Usp46os2 processed_transcript retained_intron MGP_CASTEiJ_T0017419.1 MGP_CASTEiJ_G0014920.1 mouse_genomes_project 5 73068895 73069460 + Usp46os2 processed_transcript processed_transcript MGP_CASTEiJ_T0017420.1 MGP_CASTEiJ_G0014920.1 mouse_genomes_project 5 73068900 73077146 + Usp46os2 processed_transcript antisense MGP_CASTEiJ_T0099861.1 MGP_CASTEiJ_G0036774.1 mouse_genomes_project 5 17069326 17069430 + Gm23570 snRNA snRNA MGP_CASTEiJ_T0001405.1 MGP_CASTEiJ_G0001334.1 mouse_genomes_project 5 12015275 12017546 + TEC TEC MGP_CASTEiJ_T0101785.1 MGP_CASTEiJ_G0038565.1 mouse_genomes_project 5 73436965 73438749 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0071782.1 MGP_CASTEiJ_G0028645.1 mouse_genomes_project 5 43515586 43672580 - MGP_CASTEiJ_P0071782 Lcorl protein_coding protein_coding MGP_CASTEiJ_T0071783.1 MGP_CASTEiJ_G0028645.1 mouse_genomes_project 5 43515589 43672432 - MGP_CASTEiJ_P0071783 Lcorl protein_coding protein_coding MGP_CASTEiJ_T0071785.1 MGP_CASTEiJ_G0028645.1 mouse_genomes_project 5 43520514 43671527 - MGP_CASTEiJ_P0071785 Lcorl protein_coding protein_coding MGP_CASTEiJ_T0071786.1 MGP_CASTEiJ_G0028645.1 mouse_genomes_project 5 43521513 43542119 - Lcorl protein_coding processed_transcript MGP_CASTEiJ_T0071787.1 MGP_CASTEiJ_G0028645.1 mouse_genomes_project 5 43538438 43546391 - Lcorl protein_coding retained_intron MGP_CASTEiJ_T0071788.1 MGP_CASTEiJ_G0028645.1 mouse_genomes_project 5 43553362 43672462 - MGP_CASTEiJ_P0071788 Lcorl protein_coding protein_coding MGP_CASTEiJ_T0071789.1 MGP_CASTEiJ_G0028645.1 mouse_genomes_project 5 43569376 43672432 - MGP_CASTEiJ_P0071789 Lcorl protein_coding protein_coding MGP_CASTEiJ_T0071790.1 MGP_CASTEiJ_G0028645.1 mouse_genomes_project 5 43569397 43672446 - MGP_CASTEiJ_P0071790 Lcorl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071791.1 MGP_CASTEiJ_G0028645.1 mouse_genomes_project 5 43602225 43672580 - Lcorl protein_coding retained_intron MGP_CASTEiJ_T0071792.1 MGP_CASTEiJ_G0028645.1 mouse_genomes_project 5 43602395 43672453 - MGP_CASTEiJ_P0071792 Lcorl protein_coding protein_coding MGP_CASTEiJ_T0073258.1 MGP_CASTEiJ_G0028953.1 mouse_genomes_project 5 108163159 108177246 + MGP_CASTEiJ_P0073258 1700028K03Rik protein_coding protein_coding MGP_CASTEiJ_T0073259.1 MGP_CASTEiJ_G0028953.1 mouse_genomes_project 5 108163170 108180128 + 1700028K03Rik protein_coding processed_transcript MGP_CASTEiJ_T0073260.1 MGP_CASTEiJ_G0028953.1 mouse_genomes_project 5 108163187 108178078 + MGP_CASTEiJ_P0073260 1700028K03Rik protein_coding protein_coding MGP_CASTEiJ_T0073261.1 MGP_CASTEiJ_G0028953.1 mouse_genomes_project 5 108163207 108177886 + 1700028K03Rik protein_coding retained_intron MGP_CASTEiJ_T0001386.1 MGP_CASTEiJ_G0001315.1 mouse_genomes_project 5 5496344 5498771 - TEC TEC MGP_CASTEiJ_T0074142.1 MGP_CASTEiJ_G0029124.1 mouse_genomes_project 5 122989050 123056788 - MGP_CASTEiJ_P0074142 Ptpn11 protein_coding protein_coding MGP_CASTEiJ_T0074143.1 MGP_CASTEiJ_G0029124.1 mouse_genomes_project 5 122989052 123056758 - Ptpn11 protein_coding retained_intron MGP_CASTEiJ_T0074144.1 MGP_CASTEiJ_G0029124.1 mouse_genomes_project 5 122990706 123056793 - MGP_CASTEiJ_P0074144 Ptpn11 protein_coding protein_coding MGP_CASTEiJ_T0074145.1 MGP_CASTEiJ_G0029124.1 mouse_genomes_project 5 122993934 123003713 - Ptpn11 protein_coding processed_transcript MGP_CASTEiJ_T0102358.1 MGP_CASTEiJ_G0039083.1 mouse_genomes_project 5 128068989 128069660 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0075797.1 MGP_CASTEiJ_G0029417.1 mouse_genomes_project 5 146240574 146243391 + Wipi2 protein_coding retained_intron MGP_CASTEiJ_T0075798.1 MGP_CASTEiJ_G0029417.1 mouse_genomes_project 5 146242442 146292408 + MGP_CASTEiJ_P0075798 Wipi2 protein_coding protein_coding MGP_CASTEiJ_T0075799.1 MGP_CASTEiJ_G0029417.1 mouse_genomes_project 5 146242491 146284507 + Wipi2 protein_coding retained_intron MGP_CASTEiJ_T0075800.1 MGP_CASTEiJ_G0029417.1 mouse_genomes_project 5 146242493 146289307 + MGP_CASTEiJ_P0075800 Wipi2 protein_coding protein_coding MGP_CASTEiJ_T0075801.1 MGP_CASTEiJ_G0029417.1 mouse_genomes_project 5 146284311 146286445 + Wipi2 protein_coding retained_intron MGP_CASTEiJ_T0007907.1 MGP_CASTEiJ_G0006460.1 mouse_genomes_project 5 37013338 37019402 + Gm43454 lincRNA lincRNA MGP_CASTEiJ_T0017382.1 MGP_CASTEiJ_G0014909.1 mouse_genomes_project 5 28217032 28220373 + Abhd1 processed_transcript processed_transcript MGP_CASTEiJ_T0017383.1 MGP_CASTEiJ_G0014909.1 mouse_genomes_project 5 28217032 28222061 + Abhd1 processed_transcript processed_transcript MGP_CASTEiJ_T0017384.1 MGP_CASTEiJ_G0014909.1 mouse_genomes_project 5 28217055 28222059 + Abhd1 processed_transcript retained_intron MGP_CASTEiJ_T0017385.1 MGP_CASTEiJ_G0014909.1 mouse_genomes_project 5 28217055 28220683 + Abhd1 processed_transcript processed_transcript MGP_CASTEiJ_T0017386.1 MGP_CASTEiJ_G0014909.1 mouse_genomes_project 5 28217058 28221669 + Abhd1 processed_transcript processed_transcript MGP_CASTEiJ_T0017387.1 MGP_CASTEiJ_G0014909.1 mouse_genomes_project 5 28217073 28222059 + Abhd1 processed_transcript processed_transcript MGP_CASTEiJ_T0017388.1 MGP_CASTEiJ_G0014909.1 mouse_genomes_project 5 28220343 28221154 + Abhd1 processed_transcript retained_intron MGP_CASTEiJ_T0014356.1 MGP_CASTEiJ_G0012519.1 mouse_genomes_project 5 6348318 6348560 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071228.1 MGP_CASTEiJ_G0028555.1 mouse_genomes_project 5 31057172 31086992 - MGP_CASTEiJ_P0071228 Fam53a protein_coding protein_coding MGP_CASTEiJ_T0071229.1 MGP_CASTEiJ_G0028555.1 mouse_genomes_project 5 31057181 31086269 - MGP_CASTEiJ_P0071229 Fam53a protein_coding protein_coding MGP_CASTEiJ_T0071230.1 MGP_CASTEiJ_G0028555.1 mouse_genomes_project 5 31057181 31086979 - MGP_CASTEiJ_P0071230 Fam53a protein_coding protein_coding MGP_CASTEiJ_T0071231.1 MGP_CASTEiJ_G0028555.1 mouse_genomes_project 5 31057181 31086945 - MGP_CASTEiJ_P0071231 Fam53a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071232.1 MGP_CASTEiJ_G0028555.1 mouse_genomes_project 5 31065040 31086940 - MGP_CASTEiJ_P0071232 Fam53a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071233.1 MGP_CASTEiJ_G0028555.1 mouse_genomes_project 5 31065213 31086956 - MGP_CASTEiJ_P0071233 Fam53a protein_coding protein_coding MGP_CASTEiJ_T0071234.1 MGP_CASTEiJ_G0028555.1 mouse_genomes_project 5 31067268 31086419 - MGP_CASTEiJ_P0071234 Fam53a protein_coding protein_coding MGP_CASTEiJ_T0071235.1 MGP_CASTEiJ_G0028555.1 mouse_genomes_project 5 31072531 31086962 - Fam53a protein_coding processed_transcript MGP_CASTEiJ_T0014363.1 MGP_CASTEiJ_G0012526.1 mouse_genomes_project 5 11029520 11030827 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073058.1 MGP_CASTEiJ_G0028902.1 mouse_genomes_project 5 100749029 100749980 + Mrps18c protein_coding retained_intron MGP_CASTEiJ_T0073059.1 MGP_CASTEiJ_G0028902.1 mouse_genomes_project 5 100749029 100755569 + MGP_CASTEiJ_P0073059 Mrps18c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073060.1 MGP_CASTEiJ_G0028902.1 mouse_genomes_project 5 100749033 100755572 + MGP_CASTEiJ_P0073060 Mrps18c protein_coding protein_coding MGP_CASTEiJ_T0073061.1 MGP_CASTEiJ_G0028902.1 mouse_genomes_project 5 100749056 100755509 + MGP_CASTEiJ_P0073061 Mrps18c protein_coding protein_coding MGP_CASTEiJ_T0073062.1 MGP_CASTEiJ_G0028902.1 mouse_genomes_project 5 100755013 100755570 + Mrps18c protein_coding retained_intron MGP_CASTEiJ_T0074324.1 MGP_CASTEiJ_G0029153.1 mouse_genomes_project 5 124404755 124415113 + Arpc3 protein_coding retained_intron MGP_CASTEiJ_T0074325.1 MGP_CASTEiJ_G0029153.1 mouse_genomes_project 5 124404799 124409995 + Arpc3 protein_coding retained_intron MGP_CASTEiJ_T0074326.1 MGP_CASTEiJ_G0029153.1 mouse_genomes_project 5 124404825 124420852 + MGP_CASTEiJ_P0074326 Arpc3 protein_coding protein_coding MGP_CASTEiJ_T0074327.1 MGP_CASTEiJ_G0029153.1 mouse_genomes_project 5 124409668 124427830 + MGP_CASTEiJ_P0074327 Arpc3 protein_coding protein_coding MGP_CASTEiJ_T0074328.1 MGP_CASTEiJ_G0029153.1 mouse_genomes_project 5 124413071 124418952 + MGP_CASTEiJ_P0074328 Arpc3 protein_coding protein_coding MGP_CASTEiJ_T0074329.1 MGP_CASTEiJ_G0029153.1 mouse_genomes_project 5 124413198 124418943 + MGP_CASTEiJ_P0074329 Arpc3 protein_coding protein_coding MGP_CASTEiJ_T0074330.1 MGP_CASTEiJ_G0029153.1 mouse_genomes_project 5 124416200 124417596 + Arpc3 protein_coding retained_intron MGP_CASTEiJ_T0010361.1 MGP_CASTEiJ_G0008549.1 mouse_genomes_project 5 585430 585624 + miRNA miRNA MGP_CASTEiJ_T0004752.1 MGP_CASTEiJ_G0004094.1 mouse_genomes_project 5 151416283 151461621 - 2210019I11Rik antisense antisense MGP_CASTEiJ_T0004753.1 MGP_CASTEiJ_G0004094.1 mouse_genomes_project 5 151418674 151461602 - 2210019I11Rik antisense antisense MGP_CASTEiJ_T0004754.1 MGP_CASTEiJ_G0004094.1 mouse_genomes_project 5 151426562 151461095 - 2210019I11Rik antisense antisense MGP_CASTEiJ_T0073401.1 MGP_CASTEiJ_G0028980.1 mouse_genomes_project 5 110249511 110289715 - MGP_CASTEiJ_P0073401 Crlf2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073402.1 MGP_CASTEiJ_G0028980.1 mouse_genomes_project 5 110284323 110289716 - MGP_CASTEiJ_P0073402 Crlf2 protein_coding protein_coding MGP_CASTEiJ_T0073403.1 MGP_CASTEiJ_G0028980.1 mouse_genomes_project 5 110284327 110289778 - MGP_CASTEiJ_P0073403 Crlf2 protein_coding protein_coding MGP_CASTEiJ_T0073404.1 MGP_CASTEiJ_G0028980.1 mouse_genomes_project 5 110284329 110287277 - MGP_CASTEiJ_P0073404 Crlf2 protein_coding protein_coding MGP_CASTEiJ_T0099884.1 MGP_CASTEiJ_G0036797.1 mouse_genomes_project 5 68772761 68772849 + Gm23661 snRNA snRNA MGP_CASTEiJ_T0007888.1 MGP_CASTEiJ_G0006451.1 mouse_genomes_project 5 32895321 32901387 + 4930478P22Rik lincRNA lincRNA MGP_CASTEiJ_T0007889.1 MGP_CASTEiJ_G0006451.1 mouse_genomes_project 5 32895333 32901615 + 4930478P22Rik lincRNA lincRNA MGP_CASTEiJ_T0007890.1 MGP_CASTEiJ_G0006451.1 mouse_genomes_project 5 32895339 32900860 + 4930478P22Rik lincRNA lincRNA MGP_CASTEiJ_T0001679.1 MGP_CASTEiJ_G0001602.1 mouse_genomes_project 5 104156891 104159159 - TEC TEC MGP_CASTEiJ_T0014357.1 MGP_CASTEiJ_G0012520.1 mouse_genomes_project 5 6801798 6802761 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074359.1 MGP_CASTEiJ_G0029158.1 mouse_genomes_project 5 124733252 124757680 + MGP_CASTEiJ_P0074359 P2rx4 protein_coding protein_coding MGP_CASTEiJ_T0074360.1 MGP_CASTEiJ_G0029158.1 mouse_genomes_project 5 124733277 124736940 + P2rx4 protein_coding retained_intron MGP_CASTEiJ_T0074361.1 MGP_CASTEiJ_G0029158.1 mouse_genomes_project 5 124733278 124746596 + P2rx4 protein_coding retained_intron MGP_CASTEiJ_T0074362.1 MGP_CASTEiJ_G0029158.1 mouse_genomes_project 5 124733288 124753308 + MGP_CASTEiJ_P0074362 P2rx4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074363.1 MGP_CASTEiJ_G0029158.1 mouse_genomes_project 5 124733292 124756988 + MGP_CASTEiJ_P0074363 P2rx4 protein_coding protein_coding MGP_CASTEiJ_T0074364.1 MGP_CASTEiJ_G0029158.1 mouse_genomes_project 5 124733333 124776986 + MGP_CASTEiJ_P0074364 P2rx4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0074365.1 MGP_CASTEiJ_G0029158.1 mouse_genomes_project 5 124733362 124756270 + MGP_CASTEiJ_P0074365 P2rx4 protein_coding protein_coding MGP_CASTEiJ_T0074366.1 MGP_CASTEiJ_G0029158.1 mouse_genomes_project 5 124733362 124756270 + MGP_CASTEiJ_P0074366 P2rx4 protein_coding protein_coding MGP_CASTEiJ_T0074367.1 MGP_CASTEiJ_G0029158.1 mouse_genomes_project 5 124755611 124756532 + P2rx4 protein_coding processed_transcript MGP_CASTEiJ_T0072746.1 MGP_CASTEiJ_G0028833.1 mouse_genomes_project 5 90665654 90704095 + MGP_CASTEiJ_P0072746 5830473C10Rik protein_coding protein_coding MGP_CASTEiJ_T0072747.1 MGP_CASTEiJ_G0028833.1 mouse_genomes_project 5 90665764 90683364 + MGP_CASTEiJ_P0072747 5830473C10Rik protein_coding protein_coding MGP_CASTEiJ_T0072748.1 MGP_CASTEiJ_G0028833.1 mouse_genomes_project 5 90685545 90703782 + MGP_CASTEiJ_P0072748 5830473C10Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0099898.1 MGP_CASTEiJ_G0036811.1 mouse_genomes_project 5 86802134 86802240 - Gm24121 snRNA snRNA MGP_CASTEiJ_T0014638.1 MGP_CASTEiJ_G0012801.1 mouse_genomes_project 5 128068994 128069771 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001587.1 MGP_CASTEiJ_G0001511.1 mouse_genomes_project 5 64678795 64682769 + TEC TEC MGP_CASTEiJ_T0001532.1 MGP_CASTEiJ_G0001457.1 mouse_genomes_project 5 49867420 49872894 - TEC TEC MGP_CASTEiJ_T0001492.1 MGP_CASTEiJ_G0001418.1 mouse_genomes_project 5 44283184 44284390 + TEC TEC MGP_CASTEiJ_T0070447.1 MGP_CASTEiJ_G0028419.1 mouse_genomes_project 5 17887194 17891882 + MGP_CASTEiJ_P0070447 Tmem60 protein_coding protein_coding MGP_CASTEiJ_T0070448.1 MGP_CASTEiJ_G0028419.1 mouse_genomes_project 5 17887511 17889698 + Tmem60 protein_coding processed_transcript MGP_CASTEiJ_T0001669.1 MGP_CASTEiJ_G0001592.1 mouse_genomes_project 5 100765312 100766387 - TEC TEC MGP_CASTEiJ_T0001804.1 MGP_CASTEiJ_G0001726.1 mouse_genomes_project 5 135176005 135178671 - TEC TEC MGP_CASTEiJ_T0101145.1 MGP_CASTEiJ_G0038058.1 mouse_genomes_project 5 132310639 132310770 + Snora15 snoRNA snoRNA MGP_CASTEiJ_T0004589.1 MGP_CASTEiJ_G0003979.1 mouse_genomes_project 5 75513551 75514203 + Gm7467 antisense antisense MGP_CASTEiJ_T0010434.1 MGP_CASTEiJ_G0008622.1 mouse_genomes_project 5 141906282 141906365 + Gm24082 miRNA miRNA MGP_CASTEiJ_T0071940.1 MGP_CASTEiJ_G0028670.1 mouse_genomes_project 5 62185348 62338256 + Nwd2 protein_coding retained_intron MGP_CASTEiJ_T0071941.1 MGP_CASTEiJ_G0028670.1 mouse_genomes_project 5 62185354 62357377 + MGP_CASTEiJ_P0071941 Nwd2 protein_coding protein_coding MGP_CASTEiJ_T0071942.1 MGP_CASTEiJ_G0028670.1 mouse_genomes_project 5 62185579 62346346 + MGP_CASTEiJ_P0071942 Nwd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071943.1 MGP_CASTEiJ_G0028670.1 mouse_genomes_project 5 62346160 62357377 + MGP_CASTEiJ_P0071943 Nwd2 protein_coding protein_coding MGP_CASTEiJ_T0072609.1 MGP_CASTEiJ_G0028793.1 mouse_genomes_project 5 87365088 87391501 - MGP_CASTEiJ_P0072609 Ugt2a2 protein_coding protein_coding MGP_CASTEiJ_T0072611.1 MGP_CASTEiJ_G0028793.1 mouse_genomes_project 5 87365809 87391503 - MGP_CASTEiJ_P0072611 Ugt2a2 protein_coding protein_coding MGP_CASTEiJ_T0014564.1 MGP_CASTEiJ_G0012727.1 mouse_genomes_project 5 93611635 93630187 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017404.1 MGP_CASTEiJ_G0014916.1 mouse_genomes_project 5 55848902 55981454 - 4932441J04Rik processed_transcript antisense MGP_CASTEiJ_T0017405.1 MGP_CASTEiJ_G0014916.1 mouse_genomes_project 5 55979670 55983734 - 4932441J04Rik processed_transcript retained_intron MGP_CASTEiJ_T0074518.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125837533 125860469 - MGP_CASTEiJ_P0074518 Rsrc2 protein_coding protein_coding MGP_CASTEiJ_T0074519.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125837839 125853790 - Rsrc2 protein_coding processed_transcript MGP_CASTEiJ_T0074520.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125838122 125860402 - MGP_CASTEiJ_P0074520 Rsrc2 protein_coding protein_coding MGP_CASTEiJ_T0074521.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125838133 125860368 - MGP_CASTEiJ_P0074521 Rsrc2 protein_coding protein_coding MGP_CASTEiJ_T0074522.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125838199 125853815 - MGP_CASTEiJ_P0074522 Rsrc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074523.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125838199 125854605 - MGP_CASTEiJ_P0074523 Rsrc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074524.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125838199 125854605 - MGP_CASTEiJ_P0074524 Rsrc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074525.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125838362 125844754 - Rsrc2 protein_coding retained_intron MGP_CASTEiJ_T0074526.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125839669 125860374 - MGP_CASTEiJ_P0074526 Rsrc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074527.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125844428 125860400 - MGP_CASTEiJ_P0074527 Rsrc2 protein_coding protein_coding MGP_CASTEiJ_T0074528.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125844662 125860369 - MGP_CASTEiJ_P0074528 Rsrc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074529.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125844662 125860370 - MGP_CASTEiJ_P0074529 Rsrc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074530.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125845893 125856515 - Rsrc2 protein_coding retained_intron MGP_CASTEiJ_T0074531.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125845948 125852755 - Rsrc2 protein_coding retained_intron MGP_CASTEiJ_T0074532.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125847676 125860359 - MGP_CASTEiJ_P0074532 Rsrc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074533.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125847723 125860400 - MGP_CASTEiJ_P0074533 Rsrc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074534.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125850688 125860357 - MGP_CASTEiJ_P0074534 Rsrc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074535.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125851828 125860355 - Rsrc2 protein_coding processed_transcript MGP_CASTEiJ_T0074536.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125852956 125860369 - Rsrc2 protein_coding retained_intron MGP_CASTEiJ_T0074537.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125852958 125860369 - Rsrc2 protein_coding retained_intron MGP_CASTEiJ_T0074538.1 MGP_CASTEiJ_G0029180.1 mouse_genomes_project 5 125854528 125856176 - Rsrc2 protein_coding retained_intron MGP_CASTEiJ_T0008054.1 MGP_CASTEiJ_G0006577.1 mouse_genomes_project 5 107634658 107643286 + Gm43419 lincRNA lincRNA MGP_CASTEiJ_T0004517.1 MGP_CASTEiJ_G0003921.1 mouse_genomes_project 5 22042400 22044774 + Prkag2os2 antisense antisense MGP_CASTEiJ_T0071296.1 MGP_CASTEiJ_G0028564.1 mouse_genomes_project 5 31449918 31451509 + MGP_CASTEiJ_P0071296 Gm1673 protein_coding protein_coding MGP_CASTEiJ_T0071297.1 MGP_CASTEiJ_G0028564.1 mouse_genomes_project 5 31449922 31451505 + Gm1673 protein_coding retained_intron MGP_CASTEiJ_T0071298.1 MGP_CASTEiJ_G0028564.1 mouse_genomes_project 5 31449955 31451505 + MGP_CASTEiJ_P0071298 Gm1673 protein_coding protein_coding MGP_CASTEiJ_T0071299.1 MGP_CASTEiJ_G0028564.1 mouse_genomes_project 5 31449959 31451502 + MGP_CASTEiJ_P0071299 Gm1673 protein_coding protein_coding MGP_CASTEiJ_T0071300.1 MGP_CASTEiJ_G0028564.1 mouse_genomes_project 5 31449995 31451506 + MGP_CASTEiJ_P0071300 Gm1673 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071301.1 MGP_CASTEiJ_G0028564.1 mouse_genomes_project 5 31450019 31451505 + MGP_CASTEiJ_P0071301 Gm1673 protein_coding protein_coding MGP_CASTEiJ_T0072906.1 MGP_CASTEiJ_G0028869.1 mouse_genomes_project 5 93432947 93433867 + protein_coding retained_intron MGP_CASTEiJ_T0007939.1 MGP_CASTEiJ_G0006488.1 mouse_genomes_project 5 62583172 62588440 + 5830416I19Rik lincRNA lincRNA MGP_CASTEiJ_T0001799.1 MGP_CASTEiJ_G0001721.1 mouse_genomes_project 5 134869322 134870646 - TEC TEC MGP_CASTEiJ_T0075345.1 MGP_CASTEiJ_G0029325.1 mouse_genomes_project 5 140305040 140306077 + MGP_CASTEiJ_P0075345 Ufsp1 protein_coding protein_coding MGP_CASTEiJ_T0014627.1 MGP_CASTEiJ_G0012790.1 mouse_genomes_project 5 123367291 123368117 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001698.1 MGP_CASTEiJ_G0001621.1 mouse_genomes_project 5 112301559 112303682 + TEC TEC MGP_CASTEiJ_T0001528.1 MGP_CASTEiJ_G0001453.1 mouse_genomes_project 5 49453269 49455081 - TEC TEC MGP_CASTEiJ_T0001642.1 MGP_CASTEiJ_G0001565.1 mouse_genomes_project 5 75506286 75510467 - TEC TEC MGP_CASTEiJ_T0004700.1 MGP_CASTEiJ_G0004056.1 mouse_genomes_project 5 126387777 126388498 + Gm42425 antisense antisense MGP_CASTEiJ_T0074617.1 MGP_CASTEiJ_G0029195.1 mouse_genomes_project 5 126499262 126508183 - MGP_CASTEiJ_P0074617 protein_coding protein_coding MGP_CASTEiJ_T0004701.1 MGP_CASTEiJ_G0004057.1 mouse_genomes_project 5 126838128 126841198 - 4930404A12Rik antisense antisense MGP_CASTEiJ_T0004702.1 MGP_CASTEiJ_G0004057.1 mouse_genomes_project 5 126838129 126841198 - 4930404A12Rik antisense antisense MGP_CASTEiJ_T0004593.1 MGP_CASTEiJ_G0003982.1 mouse_genomes_project 5 76698317 76705433 + Gm43261 antisense antisense MGP_CASTEiJ_T0017440.1 MGP_CASTEiJ_G0014929.1 mouse_genomes_project 5 125500839 125503547 + Gm43813 processed_transcript sense_intronic MGP_CASTEiJ_T0017441.1 MGP_CASTEiJ_G0014929.1 mouse_genomes_project 5 125500839 125507559 + Gm43813 processed_transcript TEC MGP_CASTEiJ_T0001596.1 MGP_CASTEiJ_G0001520.1 mouse_genomes_project 5 65323495 65325863 - TEC TEC MGP_CASTEiJ_T0014643.1 MGP_CASTEiJ_G0012806.1 mouse_genomes_project 5 137858672 137858844 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010378.1 MGP_CASTEiJ_G0008566.1 mouse_genomes_project 5 39628483 39628565 + Mir6414 miRNA miRNA MGP_CASTEiJ_T0071483.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33315694 33445656 + MGP_CASTEiJ_P0071483 Ablim2 protein_coding protein_coding MGP_CASTEiJ_T0071484.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33315694 33446163 + MGP_CASTEiJ_P0071484 Ablim2 protein_coding protein_coding MGP_CASTEiJ_T0071485.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33315738 33445339 + MGP_CASTEiJ_P0071485 Ablim2 protein_coding protein_coding MGP_CASTEiJ_T0071486.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33315745 33446163 + MGP_CASTEiJ_P0071486 Ablim2 protein_coding protein_coding MGP_CASTEiJ_T0071487.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33315745 33445655 + MGP_CASTEiJ_P0071487 Ablim2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071488.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33315780 33445656 + MGP_CASTEiJ_P0071488 Ablim2 protein_coding protein_coding MGP_CASTEiJ_T0071489.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33315865 33444606 + MGP_CASTEiJ_P0071489 Ablim2 protein_coding protein_coding MGP_CASTEiJ_T0071490.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33372234 33402499 + MGP_CASTEiJ_P0071490 Ablim2 protein_coding protein_coding MGP_CASTEiJ_T0071491.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33372301 33444606 + MGP_CASTEiJ_P0071491 Ablim2 protein_coding protein_coding MGP_CASTEiJ_T0071492.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33372315 33392197 + MGP_CASTEiJ_P0071492 Ablim2 protein_coding protein_coding MGP_CASTEiJ_T0071493.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33385893 33436124 + MGP_CASTEiJ_P0071493 Ablim2 protein_coding protein_coding MGP_CASTEiJ_T0071494.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33385924 33400833 + Ablim2 protein_coding retained_intron MGP_CASTEiJ_T0071495.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33385924 33417466 + MGP_CASTEiJ_P0071495 Ablim2 protein_coding protein_coding MGP_CASTEiJ_T0071496.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33400655 33417792 + MGP_CASTEiJ_P0071496 Ablim2 protein_coding protein_coding MGP_CASTEiJ_T0071497.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33408068 33430736 + Ablim2 protein_coding retained_intron MGP_CASTEiJ_T0071498.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33416676 33417792 + Ablim2 protein_coding retained_intron MGP_CASTEiJ_T0071499.1 MGP_CASTEiJ_G0028592.1 mouse_genomes_project 5 33417500 33444709 + MGP_CASTEiJ_P0071499 Ablim2 protein_coding protein_coding MGP_CASTEiJ_T0014440.1 MGP_CASTEiJ_G0012603.1 mouse_genomes_project 5 33104129 33105891 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072457.1 MGP_CASTEiJ_G0028756.1 mouse_genomes_project 5 76139013 76173555 - MGP_CASTEiJ_P0072457 Aasdh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072458.1 MGP_CASTEiJ_G0028756.1 mouse_genomes_project 5 76141332 76142065 - Aasdh protein_coding processed_transcript MGP_CASTEiJ_T0072459.1 MGP_CASTEiJ_G0028756.1 mouse_genomes_project 5 76141332 76173642 - MGP_CASTEiJ_P0072459 Aasdh protein_coding protein_coding MGP_CASTEiJ_T0072460.1 MGP_CASTEiJ_G0028756.1 mouse_genomes_project 5 76141337 76173641 - MGP_CASTEiJ_P0072460 Aasdh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072461.1 MGP_CASTEiJ_G0028756.1 mouse_genomes_project 5 76141383 76170515 - MGP_CASTEiJ_P0072461 Aasdh protein_coding protein_coding MGP_CASTEiJ_T0072462.1 MGP_CASTEiJ_G0028756.1 mouse_genomes_project 5 76141565 76148390 - MGP_CASTEiJ_P0072462 Aasdh protein_coding protein_coding MGP_CASTEiJ_T0072463.1 MGP_CASTEiJ_G0028756.1 mouse_genomes_project 5 76145807 76173620 - Aasdh protein_coding retained_intron MGP_CASTEiJ_T0072464.1 MGP_CASTEiJ_G0028756.1 mouse_genomes_project 5 76148846 76173615 - MGP_CASTEiJ_P0072464 Aasdh protein_coding protein_coding MGP_CASTEiJ_T0072465.1 MGP_CASTEiJ_G0028756.1 mouse_genomes_project 5 76148861 76150717 - Aasdh protein_coding retained_intron MGP_CASTEiJ_T0072466.1 MGP_CASTEiJ_G0028756.1 mouse_genomes_project 5 76158740 76161123 - Aasdh protein_coding retained_intron MGP_CASTEiJ_T0072467.1 MGP_CASTEiJ_G0028756.1 mouse_genomes_project 5 76160494 76173620 - Aasdh protein_coding processed_transcript MGP_CASTEiJ_T0072468.1 MGP_CASTEiJ_G0028756.1 mouse_genomes_project 5 76163457 76173620 - Aasdh protein_coding retained_intron MGP_CASTEiJ_T0072469.1 MGP_CASTEiJ_G0028756.1 mouse_genomes_project 5 76170333 76173518 - MGP_CASTEiJ_P0072469 Aasdh protein_coding protein_coding MGP_CASTEiJ_T0072470.1 MGP_CASTEiJ_G0028756.1 mouse_genomes_project 5 76170422 76173631 - MGP_CASTEiJ_P0072470 Aasdh protein_coding protein_coding MGP_CASTEiJ_T0072471.1 MGP_CASTEiJ_G0028756.1 mouse_genomes_project 5 76172463 76173556 - Aasdh protein_coding processed_transcript MGP_CASTEiJ_T0072718.1 MGP_CASTEiJ_G0028827.1 mouse_genomes_project 5 90306363 90315652 - MGP_CASTEiJ_P0072718 Cox18 protein_coding protein_coding MGP_CASTEiJ_T0072719.1 MGP_CASTEiJ_G0028827.1 mouse_genomes_project 5 90306363 90315623 - MGP_CASTEiJ_P0072719 Cox18 protein_coding protein_coding MGP_CASTEiJ_T0072720.1 MGP_CASTEiJ_G0028827.1 mouse_genomes_project 5 90306366 90307221 - Cox18 protein_coding processed_transcript MGP_CASTEiJ_T0072721.1 MGP_CASTEiJ_G0028827.1 mouse_genomes_project 5 90306366 90309451 - Cox18 protein_coding retained_intron MGP_CASTEiJ_T0072722.1 MGP_CASTEiJ_G0028827.1 mouse_genomes_project 5 90306369 90307662 - Cox18 protein_coding retained_intron MGP_CASTEiJ_T0072723.1 MGP_CASTEiJ_G0028827.1 mouse_genomes_project 5 90309105 90311358 - Cox18 protein_coding retained_intron MGP_CASTEiJ_T0072724.1 MGP_CASTEiJ_G0028827.1 mouse_genomes_project 5 90310503 90315590 - MGP_CASTEiJ_P0072724 Cox18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001433.1 MGP_CASTEiJ_G0001361.1 mouse_genomes_project 5 28371142 28373426 + TEC TEC MGP_CASTEiJ_T0001434.1 MGP_CASTEiJ_G0001361.1 mouse_genomes_project 5 28371144 28373426 + TEC TEC MGP_CASTEiJ_T0014594.1 MGP_CASTEiJ_G0012757.1 mouse_genomes_project 5 107998811 107999463 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098764.1 MGP_CASTEiJ_G0035695.1 mouse_genomes_project 5 1951426 1951553 - Gm22897 scaRNA scaRNA MGP_CASTEiJ_T0073685.1 MGP_CASTEiJ_G0029032.1 mouse_genomes_project 5 115105068 115131241 + MGP_CASTEiJ_P0073685 Dao protein_coding protein_coding MGP_CASTEiJ_T0073686.1 MGP_CASTEiJ_G0029032.1 mouse_genomes_project 5 115105249 115131008 + MGP_CASTEiJ_P0073686 Dao protein_coding protein_coding MGP_CASTEiJ_T0073687.1 MGP_CASTEiJ_G0029032.1 mouse_genomes_project 5 115106172 115131008 + MGP_CASTEiJ_P0073687 Dao protein_coding protein_coding MGP_CASTEiJ_T0073688.1 MGP_CASTEiJ_G0029032.1 mouse_genomes_project 5 115113976 115121126 + MGP_CASTEiJ_P0073688 Dao protein_coding protein_coding MGP_CASTEiJ_T0073689.1 MGP_CASTEiJ_G0029032.1 mouse_genomes_project 5 115122719 115125615 + Dao protein_coding retained_intron MGP_CASTEiJ_T0004543.1 MGP_CASTEiJ_G0003944.1 mouse_genomes_project 5 35993017 35996577 - Gm26560 antisense antisense MGP_CASTEiJ_T0014470.1 MGP_CASTEiJ_G0012633.1 mouse_genomes_project 5 52694600 52702846 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004679.1 MGP_CASTEiJ_G0004041.1 mouse_genomes_project 5 122538621 122601178 + antisense antisense MGP_CASTEiJ_T0014514.1 MGP_CASTEiJ_G0012677.1 mouse_genomes_project 5 71328865 71329376 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010391.1 MGP_CASTEiJ_G0008579.1 mouse_genomes_project 5 76579896 76579988 + Mir5098 miRNA miRNA MGP_CASTEiJ_T0004749.1 MGP_CASTEiJ_G0004092.1 mouse_genomes_project 5 147621469 147688818 - Gm17135 antisense antisense MGP_CASTEiJ_T0072834.1 MGP_CASTEiJ_G0028857.1 mouse_genomes_project 5 92506725 92515558 - MGP_CASTEiJ_P0072834 Cxcl9 protein_coding protein_coding MGP_CASTEiJ_T0072835.1 MGP_CASTEiJ_G0028857.1 mouse_genomes_project 5 92514115 92515557 - Cxcl9 protein_coding retained_intron MGP_CASTEiJ_T0076285.1 MGP_CASTEiJ_G0029511.1 mouse_genomes_project 5 155203014 155348233 + MGP_CASTEiJ_P0076285 Pds5b protein_coding protein_coding MGP_CASTEiJ_T0076286.1 MGP_CASTEiJ_G0029511.1 mouse_genomes_project 5 155203014 155349058 + MGP_CASTEiJ_P0076286 Pds5b protein_coding protein_coding MGP_CASTEiJ_T0076287.1 MGP_CASTEiJ_G0029511.1 mouse_genomes_project 5 155203102 155349035 + MGP_CASTEiJ_P0076287 Pds5b protein_coding protein_coding MGP_CASTEiJ_T0076288.1 MGP_CASTEiJ_G0029511.1 mouse_genomes_project 5 155283983 155284779 + Pds5b protein_coding retained_intron MGP_CASTEiJ_T0076289.1 MGP_CASTEiJ_G0029511.1 mouse_genomes_project 5 155293482 155336427 + MGP_CASTEiJ_P0076289 Pds5b protein_coding protein_coding MGP_CASTEiJ_T0076290.1 MGP_CASTEiJ_G0029511.1 mouse_genomes_project 5 155296553 155307564 + Pds5b protein_coding processed_transcript MGP_CASTEiJ_T0076291.1 MGP_CASTEiJ_G0029511.1 mouse_genomes_project 5 155331316 155338725 + Pds5b protein_coding processed_transcript MGP_CASTEiJ_T0076292.1 MGP_CASTEiJ_G0029511.1 mouse_genomes_project 5 155343625 155348848 + Pds5b protein_coding retained_intron MGP_CASTEiJ_T0004640.1 MGP_CASTEiJ_G0004014.1 mouse_genomes_project 5 111151197 111153232 - Gm15792 antisense antisense MGP_CASTEiJ_T0070696.1 MGP_CASTEiJ_G0028466.1 mouse_genomes_project 5 22031688 22284080 - MGP_CASTEiJ_P0070696 Prkag2 protein_coding protein_coding MGP_CASTEiJ_T0070697.1 MGP_CASTEiJ_G0028466.1 mouse_genomes_project 5 22031692 22079518 - MGP_CASTEiJ_P0070697 Prkag2 protein_coding protein_coding MGP_CASTEiJ_T0070698.1 MGP_CASTEiJ_G0028466.1 mouse_genomes_project 5 22031692 22172725 - MGP_CASTEiJ_P0070698 Prkag2 protein_coding protein_coding MGP_CASTEiJ_T0070699.1 MGP_CASTEiJ_G0028466.1 mouse_genomes_project 5 22032720 22040613 - Prkag2 protein_coding retained_intron MGP_CASTEiJ_T0070700.1 MGP_CASTEiJ_G0028466.1 mouse_genomes_project 5 22038208 22079558 - MGP_CASTEiJ_P0070700 Prkag2 protein_coding protein_coding MGP_CASTEiJ_T0070701.1 MGP_CASTEiJ_G0028466.1 mouse_genomes_project 5 22040396 22073436 - MGP_CASTEiJ_P0070701 Prkag2 protein_coding protein_coding MGP_CASTEiJ_T0070702.1 MGP_CASTEiJ_G0028466.1 mouse_genomes_project 5 22043712 22060710 - Prkag2 protein_coding retained_intron MGP_CASTEiJ_T0070703.1 MGP_CASTEiJ_G0028466.1 mouse_genomes_project 5 22044239 22079501 - Prkag2 protein_coding retained_intron MGP_CASTEiJ_T0070704.1 MGP_CASTEiJ_G0028466.1 mouse_genomes_project 5 22060718 22080022 - MGP_CASTEiJ_P0070704 Prkag2 protein_coding protein_coding MGP_CASTEiJ_T0070705.1 MGP_CASTEiJ_G0028466.1 mouse_genomes_project 5 22077249 22079499 - Prkag2 protein_coding processed_transcript MGP_CASTEiJ_T0098613.1 MGP_CASTEiJ_G0035544.1 mouse_genomes_project 5 63772088 63772207 + Gm25154 rRNA rRNA MGP_CASTEiJ_T0007883.1 MGP_CASTEiJ_G0006447.1 mouse_genomes_project 5 29744218 29752134 - Gm7596 lincRNA lincRNA MGP_CASTEiJ_T0007884.1 MGP_CASTEiJ_G0006447.1 mouse_genomes_project 5 29744244 29747527 - Gm7596 lincRNA lincRNA MGP_CASTEiJ_T0007851.1 MGP_CASTEiJ_G0006428.1 mouse_genomes_project 5 19620984 19633303 + lincRNA lincRNA MGP_CASTEiJ_T0007852.1 MGP_CASTEiJ_G0006428.1 mouse_genomes_project 5 19620991 19887738 + lincRNA lincRNA MGP_CASTEiJ_T0007853.1 MGP_CASTEiJ_G0006428.1 mouse_genomes_project 5 19629124 19632488 + lincRNA lincRNA MGP_CASTEiJ_T0001545.1 MGP_CASTEiJ_G0001470.1 mouse_genomes_project 5 55721762 55725349 + TEC TEC MGP_CASTEiJ_T0098969.1 MGP_CASTEiJ_G0035893.1 mouse_genomes_project 5 111020474 111021182 + Gm43138 sense_intronic sense_intronic MGP_CASTEiJ_T0073601.1 MGP_CASTEiJ_G0029017.1 mouse_genomes_project 5 114067360 114078810 - MGP_CASTEiJ_P0073601 Crybb2 protein_coding protein_coding MGP_CASTEiJ_T0073602.1 MGP_CASTEiJ_G0029017.1 mouse_genomes_project 5 114067367 114077456 - MGP_CASTEiJ_P0073602 Crybb2 protein_coding protein_coding MGP_CASTEiJ_T0073603.1 MGP_CASTEiJ_G0029017.1 mouse_genomes_project 5 114071833 114077147 - Crybb2 protein_coding processed_transcript MGP_CASTEiJ_T0073604.1 MGP_CASTEiJ_G0029017.1 mouse_genomes_project 5 114076743 114077461 - Crybb2 protein_coding processed_transcript MGP_CASTEiJ_T0073605.1 MGP_CASTEiJ_G0029017.1 mouse_genomes_project 5 114077381 114078184 - Crybb2 protein_coding processed_transcript MGP_CASTEiJ_T0075275.1 MGP_CASTEiJ_G0029311.1 mouse_genomes_project 5 139653282 139663281 + MGP_CASTEiJ_P0075275 Myl10 protein_coding protein_coding MGP_CASTEiJ_T0075276.1 MGP_CASTEiJ_G0029311.1 mouse_genomes_project 5 139653314 139663179 + MGP_CASTEiJ_P0075276 Myl10 protein_coding protein_coding MGP_CASTEiJ_T0075277.1 MGP_CASTEiJ_G0029311.1 mouse_genomes_project 5 139653862 139663281 + MGP_CASTEiJ_P0075277 Myl10 protein_coding protein_coding MGP_CASTEiJ_T0075278.1 MGP_CASTEiJ_G0029311.1 mouse_genomes_project 5 139654438 139663281 + MGP_CASTEiJ_P0075278 Myl10 protein_coding protein_coding MGP_CASTEiJ_T0075279.1 MGP_CASTEiJ_G0029311.1 mouse_genomes_project 5 139657985 139663281 + Myl10 protein_coding retained_intron MGP_CASTEiJ_T0075280.1 MGP_CASTEiJ_G0029311.1 mouse_genomes_project 5 139658036 139663279 + Myl10 protein_coding retained_intron MGP_CASTEiJ_T0070975.1 MGP_CASTEiJ_G0028517.1 mouse_genomes_project 5 28383615 28390296 + MGP_CASTEiJ_P0070975 Dnajc5g protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070976.1 MGP_CASTEiJ_G0028517.1 mouse_genomes_project 5 28386629 28390051 + MGP_CASTEiJ_P0070976 Dnajc5g protein_coding protein_coding MGP_CASTEiJ_T0070977.1 MGP_CASTEiJ_G0028517.1 mouse_genomes_project 5 28386639 28390155 + MGP_CASTEiJ_P0070977 Dnajc5g protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070978.1 MGP_CASTEiJ_G0028517.1 mouse_genomes_project 5 28386641 28390837 + MGP_CASTEiJ_P0070978 Dnajc5g protein_coding protein_coding MGP_CASTEiJ_T0014365.1 MGP_CASTEiJ_G0012528.1 mouse_genomes_project 5 11059997 11060961 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011275.1 MGP_CASTEiJ_G0009463.1 mouse_genomes_project 5 112210057 112210217 - Gm27680 misc_RNA misc_RNA MGP_CASTEiJ_T0073325.1 MGP_CASTEiJ_G0028963.1 mouse_genomes_project 5 108781932 108815498 + MGP_CASTEiJ_P0073325 Ccdc18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073326.1 MGP_CASTEiJ_G0028963.1 mouse_genomes_project 5 108781971 108895364 + MGP_CASTEiJ_P0073326 Ccdc18 protein_coding protein_coding MGP_CASTEiJ_T0073327.1 MGP_CASTEiJ_G0028963.1 mouse_genomes_project 5 108782003 108790695 + Ccdc18 protein_coding retained_intron MGP_CASTEiJ_T0073328.1 MGP_CASTEiJ_G0028963.1 mouse_genomes_project 5 108815683 108828019 + Ccdc18 protein_coding processed_transcript MGP_CASTEiJ_T0072735.1 MGP_CASTEiJ_G0028829.1 mouse_genomes_project 5 90468565 90469850 + MGP_CASTEiJ_P0072735 Gm9958 protein_coding protein_coding MGP_CASTEiJ_T0001667.1 MGP_CASTEiJ_G0001590.1 mouse_genomes_project 5 100355470 100357306 + TEC TEC MGP_CASTEiJ_T0099866.1 MGP_CASTEiJ_G0036779.1 mouse_genomes_project 5 21560010 21560111 - Gm22333 snRNA snRNA MGP_CASTEiJ_T0072222.1 MGP_CASTEiJ_G0028716.1 mouse_genomes_project 5 70474600 70561196 - MGP_CASTEiJ_P0072222 Gabra4 protein_coding protein_coding MGP_CASTEiJ_T0072223.1 MGP_CASTEiJ_G0028716.1 mouse_genomes_project 5 70476053 70560869 - MGP_CASTEiJ_P0072223 Gabra4 protein_coding protein_coding MGP_CASTEiJ_T0072224.1 MGP_CASTEiJ_G0028716.1 mouse_genomes_project 5 70476459 70560778 - MGP_CASTEiJ_P0072224 Gabra4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072225.1 MGP_CASTEiJ_G0028716.1 mouse_genomes_project 5 70476908 70560763 - MGP_CASTEiJ_P0072225 Gabra4 protein_coding protein_coding MGP_CASTEiJ_T0072226.1 MGP_CASTEiJ_G0028716.1 mouse_genomes_project 5 70558078 70560708 - Gabra4 protein_coding retained_intron MGP_CASTEiJ_T0098983.1 MGP_CASTEiJ_G0035905.1 mouse_genomes_project 5 148108918 148112064 + Dmrt1i sense_intronic sense_intronic MGP_CASTEiJ_T0098984.1 MGP_CASTEiJ_G0035905.1 mouse_genomes_project 5 148109520 148112021 + Dmrt1i sense_intronic sense_intronic MGP_CASTEiJ_T0098985.1 MGP_CASTEiJ_G0035905.1 mouse_genomes_project 5 148109520 148112021 + Dmrt1i sense_intronic sense_intronic MGP_CASTEiJ_T0008189.1 MGP_CASTEiJ_G0006661.1 mouse_genomes_project 5 130977560 130984621 - 5930412G12Rik lincRNA lincRNA MGP_CASTEiJ_T0008190.1 MGP_CASTEiJ_G0006661.1 mouse_genomes_project 5 130977560 130999966 - 5930412G12Rik lincRNA lincRNA MGP_CASTEiJ_T0008191.1 MGP_CASTEiJ_G0006661.1 mouse_genomes_project 5 130977571 130999966 - 5930412G12Rik lincRNA lincRNA MGP_CASTEiJ_T0008192.1 MGP_CASTEiJ_G0006661.1 mouse_genomes_project 5 130977621 130984621 - 5930412G12Rik lincRNA lincRNA MGP_CASTEiJ_T0008193.1 MGP_CASTEiJ_G0006661.1 mouse_genomes_project 5 130981312 130999972 - 5930412G12Rik lincRNA lincRNA MGP_CASTEiJ_T0008194.1 MGP_CASTEiJ_G0006661.1 mouse_genomes_project 5 130982417 130999933 - 5930412G12Rik lincRNA lincRNA MGP_CASTEiJ_T0014420.1 MGP_CASTEiJ_G0012583.1 mouse_genomes_project 5 27049816 27050505 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004703.1 MGP_CASTEiJ_G0004058.1 mouse_genomes_project 5 126947976 126948488 - Gm43777 antisense antisense MGP_CASTEiJ_T0014393.1 MGP_CASTEiJ_G0012556.1 mouse_genomes_project 5 20442372 20442992 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011263.1 MGP_CASTEiJ_G0009451.1 mouse_genomes_project 5 37056039 37056285 + Gm25505 misc_RNA misc_RNA MGP_CASTEiJ_T0072123.1 MGP_CASTEiJ_G0028698.1 mouse_genomes_project 5 65475571 65488038 + MGP_CASTEiJ_P0072123 Uchl1 protein_coding protein_coding MGP_CASTEiJ_T0072124.1 MGP_CASTEiJ_G0028698.1 mouse_genomes_project 5 65475722 65476324 + Uchl1 protein_coding retained_intron MGP_CASTEiJ_T0072125.1 MGP_CASTEiJ_G0028698.1 mouse_genomes_project 5 65476370 65488032 + Uchl1 protein_coding retained_intron MGP_CASTEiJ_T0072126.1 MGP_CASTEiJ_G0028698.1 mouse_genomes_project 5 65484513 65487765 + Uchl1 protein_coding retained_intron MGP_CASTEiJ_T0001746.1 MGP_CASTEiJ_G0001669.1 mouse_genomes_project 5 124497848 124500065 - TEC TEC MGP_CASTEiJ_T0099883.1 MGP_CASTEiJ_G0036796.1 mouse_genomes_project 5 68616090 68616216 - Gm26044 snRNA snRNA MGP_CASTEiJ_T0101150.1 MGP_CASTEiJ_G0038063.1 mouse_genomes_project 5 153524054 153524152 + Gm23362 snoRNA snoRNA MGP_CASTEiJ_T0010367.1 MGP_CASTEiJ_G0008555.1 mouse_genomes_project 5 20386240 20386286 - Gm28022 miRNA miRNA MGP_CASTEiJ_T0004647.1 MGP_CASTEiJ_G0004020.1 mouse_genomes_project 5 114710816 114711536 + Gm15736 antisense antisense MGP_CASTEiJ_T0099908.1 MGP_CASTEiJ_G0036821.1 mouse_genomes_project 5 107219963 107220085 + Gm24191 snRNA snRNA MGP_CASTEiJ_T0101137.1 MGP_CASTEiJ_G0038050.1 mouse_genomes_project 5 108543122 108543216 + Snord21 snoRNA snoRNA MGP_CASTEiJ_T0071764.1 MGP_CASTEiJ_G0028641.1 mouse_genomes_project 5 43304052 43323341 + MGP_CASTEiJ_P0071764 Lap3 protein_coding protein_coding MGP_CASTEiJ_T0071765.1 MGP_CASTEiJ_G0028641.1 mouse_genomes_project 5 43304182 43311309 + Lap3 protein_coding retained_intron MGP_CASTEiJ_T0071766.1 MGP_CASTEiJ_G0028641.1 mouse_genomes_project 5 43304204 43313947 + MGP_CASTEiJ_P0071766 Lap3 protein_coding protein_coding MGP_CASTEiJ_T0071767.1 MGP_CASTEiJ_G0028641.1 mouse_genomes_project 5 43308945 43315393 + Lap3 protein_coding retained_intron MGP_CASTEiJ_T0071768.1 MGP_CASTEiJ_G0028641.1 mouse_genomes_project 5 43310902 43315364 + Lap3 protein_coding retained_intron MGP_CASTEiJ_T0071769.1 MGP_CASTEiJ_G0028641.1 mouse_genomes_project 5 43319852 43322023 + Lap3 protein_coding retained_intron MGP_CASTEiJ_T0072510.1 MGP_CASTEiJ_G0028766.1 mouse_genomes_project 5 76617620 76659631 + MGP_CASTEiJ_P0072510 Polr2b protein_coding protein_coding MGP_CASTEiJ_T0072511.1 MGP_CASTEiJ_G0028766.1 mouse_genomes_project 5 76617963 76620720 + Polr2b protein_coding retained_intron MGP_CASTEiJ_T0072512.1 MGP_CASTEiJ_G0028766.1 mouse_genomes_project 5 76634389 76635608 + Polr2b protein_coding retained_intron MGP_CASTEiJ_T0072513.1 MGP_CASTEiJ_G0028766.1 mouse_genomes_project 5 76648884 76651760 + Polr2b protein_coding retained_intron MGP_CASTEiJ_T0008211.1 MGP_CASTEiJ_G0006674.1 mouse_genomes_project 5 140539178 140540140 + 9130604C24Rik lincRNA lincRNA MGP_CASTEiJ_T0007969.1 MGP_CASTEiJ_G0006511.1 mouse_genomes_project 5 74884631 74894427 + Gm43101 lincRNA lincRNA MGP_CASTEiJ_T0007970.1 MGP_CASTEiJ_G0006511.1 mouse_genomes_project 5 74893320 74894428 + Gm43101 lincRNA lincRNA MGP_CASTEiJ_T0007938.1 MGP_CASTEiJ_G0006487.1 mouse_genomes_project 5 59356016 59360758 - 1700014F14Rik lincRNA lincRNA MGP_CASTEiJ_T0076049.1 MGP_CASTEiJ_G0029472.1 mouse_genomes_project 5 150239864 150254027 - MGP_CASTEiJ_P0076049 Rnf6 protein_coding protein_coding MGP_CASTEiJ_T0076050.1 MGP_CASTEiJ_G0029472.1 mouse_genomes_project 5 150239868 150253376 - MGP_CASTEiJ_P0076050 Rnf6 protein_coding protein_coding MGP_CASTEiJ_T0076051.1 MGP_CASTEiJ_G0029472.1 mouse_genomes_project 5 150240630 150253451 - MGP_CASTEiJ_P0076051 Rnf6 protein_coding protein_coding MGP_CASTEiJ_T0076052.1 MGP_CASTEiJ_G0029472.1 mouse_genomes_project 5 150241976 150250463 - MGP_CASTEiJ_P0076052 Rnf6 protein_coding protein_coding MGP_CASTEiJ_T0076053.1 MGP_CASTEiJ_G0029472.1 mouse_genomes_project 5 150242349 150253890 - MGP_CASTEiJ_P0076053 Rnf6 protein_coding protein_coding MGP_CASTEiJ_T0076054.1 MGP_CASTEiJ_G0029472.1 mouse_genomes_project 5 150242377 150253410 - MGP_CASTEiJ_P0076054 Rnf6 protein_coding protein_coding MGP_CASTEiJ_T0076055.1 MGP_CASTEiJ_G0029472.1 mouse_genomes_project 5 150242526 150253423 - MGP_CASTEiJ_P0076055 Rnf6 protein_coding protein_coding MGP_CASTEiJ_T0076056.1 MGP_CASTEiJ_G0029472.1 mouse_genomes_project 5 150250552 150253421 - Rnf6 protein_coding processed_transcript MGP_CASTEiJ_T0074193.1 MGP_CASTEiJ_G0029134.1 mouse_genomes_project 5 123422777 123447528 - MGP_CASTEiJ_P0074193 Mapkapk5 protein_coding protein_coding MGP_CASTEiJ_T0074194.1 MGP_CASTEiJ_G0029134.1 mouse_genomes_project 5 123422787 123446826 - MGP_CASTEiJ_P0074194 Mapkapk5 protein_coding protein_coding MGP_CASTEiJ_T0074195.1 MGP_CASTEiJ_G0029134.1 mouse_genomes_project 5 123422791 123424985 - Mapkapk5 protein_coding retained_intron MGP_CASTEiJ_T0074196.1 MGP_CASTEiJ_G0029134.1 mouse_genomes_project 5 123422791 123423572 - Mapkapk5 protein_coding retained_intron MGP_CASTEiJ_T0074197.1 MGP_CASTEiJ_G0029134.1 mouse_genomes_project 5 123422791 123424918 - MGP_CASTEiJ_P0074197 Mapkapk5 protein_coding protein_coding MGP_CASTEiJ_T0074198.1 MGP_CASTEiJ_G0029134.1 mouse_genomes_project 5 123422795 123439343 - Mapkapk5 protein_coding processed_transcript MGP_CASTEiJ_T0074199.1 MGP_CASTEiJ_G0029134.1 mouse_genomes_project 5 123422884 123446826 - MGP_CASTEiJ_P0074199 Mapkapk5 protein_coding protein_coding MGP_CASTEiJ_T0074200.1 MGP_CASTEiJ_G0029134.1 mouse_genomes_project 5 123422884 123446826 - MGP_CASTEiJ_P0074200 Mapkapk5 protein_coding protein_coding MGP_CASTEiJ_T0074201.1 MGP_CASTEiJ_G0029134.1 mouse_genomes_project 5 123423497 123446826 - Mapkapk5 protein_coding processed_transcript MGP_CASTEiJ_T0074202.1 MGP_CASTEiJ_G0029134.1 mouse_genomes_project 5 123424293 123433431 - Mapkapk5 protein_coding retained_intron MGP_CASTEiJ_T0074203.1 MGP_CASTEiJ_G0029134.1 mouse_genomes_project 5 123434964 123437473 - MGP_CASTEiJ_P0074203 Mapkapk5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074204.1 MGP_CASTEiJ_G0029134.1 mouse_genomes_project 5 123435159 123446857 - MGP_CASTEiJ_P0074204 Mapkapk5 protein_coding protein_coding MGP_CASTEiJ_T0074205.1 MGP_CASTEiJ_G0029134.1 mouse_genomes_project 5 123436249 123438806 - Mapkapk5 protein_coding processed_transcript MGP_CASTEiJ_T0004526.1 MGP_CASTEiJ_G0003928.1 mouse_genomes_project 5 28758336 28759656 - 4930566F21Rik antisense antisense MGP_CASTEiJ_T0004527.1 MGP_CASTEiJ_G0003928.1 mouse_genomes_project 5 28758340 28766892 - 4930566F21Rik antisense antisense MGP_CASTEiJ_T0098612.1 MGP_CASTEiJ_G0035543.1 mouse_genomes_project 5 51507672 51507782 + Gm26486 rRNA rRNA MGP_CASTEiJ_T0073641.1 MGP_CASTEiJ_G0029024.1 mouse_genomes_project 5 114764870 114802777 - MGP_CASTEiJ_P0073641 1700069L16Rik protein_coding protein_coding MGP_CASTEiJ_T0073642.1 MGP_CASTEiJ_G0029024.1 mouse_genomes_project 5 114776419 114780613 - 1700069L16Rik protein_coding processed_transcript MGP_CASTEiJ_T0073643.1 MGP_CASTEiJ_G0029024.1 mouse_genomes_project 5 114779869 114802754 - MGP_CASTEiJ_P0073643 1700069L16Rik protein_coding protein_coding MGP_CASTEiJ_T0001525.1 MGP_CASTEiJ_G0001450.1 mouse_genomes_project 5 47982166 47984723 + TEC TEC MGP_CASTEiJ_T0071887.1 MGP_CASTEiJ_G0028659.1 mouse_genomes_project 5 51102807 51126054 + MGP_CASTEiJ_P0071887 Slc34a2 protein_coding protein_coding MGP_CASTEiJ_T0071888.1 MGP_CASTEiJ_G0028659.1 mouse_genomes_project 5 51113824 51135691 + MGP_CASTEiJ_P0071888 Slc34a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071889.1 MGP_CASTEiJ_G0028659.1 mouse_genomes_project 5 51114012 51135694 + MGP_CASTEiJ_P0071889 Slc34a2 protein_coding protein_coding MGP_CASTEiJ_T0071890.1 MGP_CASTEiJ_G0028659.1 mouse_genomes_project 5 51114013 51130929 + Slc34a2 protein_coding retained_intron MGP_CASTEiJ_T0014559.1 MGP_CASTEiJ_G0012722.1 mouse_genomes_project 5 92553884 92555488 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001579.1 MGP_CASTEiJ_G0001503.1 mouse_genomes_project 5 64340996 64342547 - TEC TEC MGP_CASTEiJ_T0014619.1 MGP_CASTEiJ_G0012782.1 mouse_genomes_project 5 116414824 116415187 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001683.1 MGP_CASTEiJ_G0001606.1 mouse_genomes_project 5 106368210 106370539 + TEC TEC MGP_CASTEiJ_T0014496.1 MGP_CASTEiJ_G0012659.1 mouse_genomes_project 5 62229025 62229485 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004727.1 MGP_CASTEiJ_G0004077.1 mouse_genomes_project 5 139060075 139060783 - Gm43604 antisense antisense MGP_CASTEiJ_T0004571.1 MGP_CASTEiJ_G0003964.1 mouse_genomes_project 5 64911331 64941666 - 1700126H18Rik antisense antisense MGP_CASTEiJ_T0102344.1 MGP_CASTEiJ_G0039069.1 mouse_genomes_project 5 77032113 77033921 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0075676.1 MGP_CASTEiJ_G0029387.1 mouse_genomes_project 5 142775368 142791185 + MGP_CASTEiJ_P0075676 Gper1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0075677.1 MGP_CASTEiJ_G0029387.1 mouse_genomes_project 5 142781813 142784384 + Gper1 protein_coding processed_transcript MGP_CASTEiJ_T0073340.1 MGP_CASTEiJ_G0028968.1 mouse_genomes_project 5 109117570 109125283 - MGP_CASTEiJ_P0073340 Mfsd7a protein_coding protein_coding MGP_CASTEiJ_T0075653.1 MGP_CASTEiJ_G0029382.1 mouse_genomes_project 5 142681675 142692509 - MGP_CASTEiJ_P0075653 Cox19 protein_coding protein_coding MGP_CASTEiJ_T0075654.1 MGP_CASTEiJ_G0029382.1 mouse_genomes_project 5 142683322 142692453 - Cox19 protein_coding processed_transcript MGP_CASTEiJ_T0075655.1 MGP_CASTEiJ_G0029382.1 mouse_genomes_project 5 142683640 142685076 - Cox19 protein_coding processed_transcript MGP_CASTEiJ_T0075656.1 MGP_CASTEiJ_G0029382.1 mouse_genomes_project 5 142683721 142700147 - MGP_CASTEiJ_P0075656 Cox19 protein_coding protein_coding MGP_CASTEiJ_T0075657.1 MGP_CASTEiJ_G0029382.1 mouse_genomes_project 5 142683810 142692401 - MGP_CASTEiJ_P0075657 Cox19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075658.1 MGP_CASTEiJ_G0029382.1 mouse_genomes_project 5 142687552 142692436 - Cox19 protein_coding retained_intron MGP_CASTEiJ_T0075659.1 MGP_CASTEiJ_G0029382.1 mouse_genomes_project 5 142687721 142692441 - Cox19 protein_coding retained_intron MGP_CASTEiJ_T0098979.1 MGP_CASTEiJ_G0035902.1 mouse_genomes_project 5 146529935 146534245 - D430018E03Rik sense_intronic sense_intronic MGP_CASTEiJ_T0075202.1 MGP_CASTEiJ_G0029299.1 mouse_genomes_project 5 138897500 138906509 + MGP_CASTEiJ_P0075202 Zp3 protein_coding protein_coding MGP_CASTEiJ_T0075203.1 MGP_CASTEiJ_G0029299.1 mouse_genomes_project 5 138897569 138905174 + MGP_CASTEiJ_P0075203 Zp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001649.1 MGP_CASTEiJ_G0001572.1 mouse_genomes_project 5 89591032 89593167 + TEC TEC MGP_CASTEiJ_T0075438.1 MGP_CASTEiJ_G0029340.1 mouse_genomes_project 5 140677421 140689375 + MGP_CASTEiJ_P0075438 protein_coding protein_coding MGP_CASTEiJ_T0075439.1 MGP_CASTEiJ_G0029340.1 mouse_genomes_project 5 140677443 140685092 + protein_coding retained_intron MGP_CASTEiJ_T0075440.1 MGP_CASTEiJ_G0029340.1 mouse_genomes_project 5 140677452 140685909 + MGP_CASTEiJ_P0075440 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075442.1 MGP_CASTEiJ_G0029340.1 mouse_genomes_project 5 140677478 140682195 + MGP_CASTEiJ_P0075442 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075443.1 MGP_CASTEiJ_G0029340.1 mouse_genomes_project 5 140677478 140689380 + MGP_CASTEiJ_P0075443 protein_coding protein_coding MGP_CASTEiJ_T0075444.1 MGP_CASTEiJ_G0029340.1 mouse_genomes_project 5 140678430 140688461 + MGP_CASTEiJ_P0075444 protein_coding protein_coding MGP_CASTEiJ_T0075445.1 MGP_CASTEiJ_G0029340.1 mouse_genomes_project 5 140686614 140687644 + MGP_CASTEiJ_P0075445 protein_coding protein_coding MGP_CASTEiJ_T0075446.1 MGP_CASTEiJ_G0029340.1 mouse_genomes_project 5 140687646 140688520 + MGP_CASTEiJ_P0075446 protein_coding protein_coding MGP_CASTEiJ_T0004507.1 MGP_CASTEiJ_G0003913.1 mouse_genomes_project 5 16145573 16172217 - 4921504A21Rik antisense antisense MGP_CASTEiJ_T0004508.1 MGP_CASTEiJ_G0003913.1 mouse_genomes_project 5 16146494 16171830 - 4921504A21Rik antisense antisense MGP_CASTEiJ_T0074398.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124918871 125047635 - MGP_CASTEiJ_P0074398 Kdm2b protein_coding protein_coding MGP_CASTEiJ_T0074399.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124918874 124951993 - MGP_CASTEiJ_P0074399 Kdm2b protein_coding protein_coding MGP_CASTEiJ_T0074400.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124918898 125047842 - MGP_CASTEiJ_P0074400 Kdm2b protein_coding protein_coding MGP_CASTEiJ_T0074401.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124918898 125047069 - MGP_CASTEiJ_P0074401 Kdm2b protein_coding protein_coding MGP_CASTEiJ_T0074402.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124919515 125048330 - MGP_CASTEiJ_P0074402 Kdm2b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074403.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124919910 125048359 - MGP_CASTEiJ_P0074403 Kdm2b protein_coding protein_coding MGP_CASTEiJ_T0074404.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124923675 124929239 - Kdm2b protein_coding retained_intron MGP_CASTEiJ_T0074405.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124928664 124936673 - MGP_CASTEiJ_P0074405 Kdm2b protein_coding protein_coding MGP_CASTEiJ_T0074406.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124928791 124930387 - Kdm2b protein_coding retained_intron MGP_CASTEiJ_T0074407.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124930369 124971788 - Kdm2b protein_coding processed_transcript MGP_CASTEiJ_T0074408.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124931581 124976214 - Kdm2b protein_coding processed_transcript MGP_CASTEiJ_T0074409.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124931591 124975654 - Kdm2b protein_coding retained_intron MGP_CASTEiJ_T0074410.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124935943 125047628 - Kdm2b protein_coding retained_intron MGP_CASTEiJ_T0074411.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124986474 125047072 - MGP_CASTEiJ_P0074411 Kdm2b protein_coding protein_coding MGP_CASTEiJ_T0074412.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124986577 125006563 - MGP_CASTEiJ_P0074412 Kdm2b protein_coding protein_coding MGP_CASTEiJ_T0074413.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124986660 125002064 - Kdm2b protein_coding processed_transcript MGP_CASTEiJ_T0074414.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124988829 125007174 - Kdm2b protein_coding processed_transcript MGP_CASTEiJ_T0074415.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124988849 125006047 - Kdm2b protein_coding processed_transcript MGP_CASTEiJ_T0074416.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 124994599 125047635 - Kdm2b protein_coding retained_intron MGP_CASTEiJ_T0074417.1 MGP_CASTEiJ_G0029162.1 mouse_genomes_project 5 125001804 125043452 - Kdm2b protein_coding processed_transcript MGP_CASTEiJ_T0014698.1 MGP_CASTEiJ_G0012861.1 mouse_genomes_project 5 155017900 155021170 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071179.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30279057 30305502 + MGP_CASTEiJ_P0071179 Depdc5 protein_coding protein_coding MGP_CASTEiJ_T0071180.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30279062 30314107 + MGP_CASTEiJ_P0071180 Depdc5 protein_coding protein_coding MGP_CASTEiJ_T0071181.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30279069 30283357 + MGP_CASTEiJ_P0071181 Depdc5 protein_coding protein_coding MGP_CASTEiJ_T0071182.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30279077 30378291 + MGP_CASTEiJ_P0071182 Depdc5 protein_coding protein_coding MGP_CASTEiJ_T0071183.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30279077 30417972 + MGP_CASTEiJ_P0071183 Depdc5 protein_coding protein_coding MGP_CASTEiJ_T0071184.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30279090 30417967 + MGP_CASTEiJ_P0071184 Depdc5 protein_coding protein_coding MGP_CASTEiJ_T0071185.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30279116 30324959 + Depdc5 protein_coding retained_intron MGP_CASTEiJ_T0071186.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30279126 30306121 + Depdc5 protein_coding retained_intron MGP_CASTEiJ_T0071187.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30279126 30346620 + MGP_CASTEiJ_P0071187 Depdc5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071188.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30279128 30296240 + MGP_CASTEiJ_P0071188 Depdc5 protein_coding protein_coding MGP_CASTEiJ_T0071189.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30279133 30378289 + Depdc5 protein_coding processed_transcript MGP_CASTEiJ_T0071190.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30279512 30283369 + MGP_CASTEiJ_P0071190 Depdc5 protein_coding protein_coding MGP_CASTEiJ_T0071191.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30279944 30415406 + MGP_CASTEiJ_P0071191 Depdc5 protein_coding protein_coding MGP_CASTEiJ_T0071192.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30322477 30339721 + MGP_CASTEiJ_P0071192 Depdc5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071193.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30346645 30415399 + MGP_CASTEiJ_P0071193 Depdc5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071194.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30346743 30415406 + MGP_CASTEiJ_P0071194 Depdc5 protein_coding protein_coding MGP_CASTEiJ_T0071195.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30366430 30367644 + Depdc5 protein_coding retained_intron MGP_CASTEiJ_T0071196.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30366725 30387767 + MGP_CASTEiJ_P0071196 Depdc5 protein_coding protein_coding MGP_CASTEiJ_T0071197.1 MGP_CASTEiJ_G0028547.1 mouse_genomes_project 5 30390770 30396975 + Depdc5 protein_coding retained_intron MGP_CASTEiJ_T0001581.1 MGP_CASTEiJ_G0001505.1 mouse_genomes_project 5 64451916 64455613 + TEC TEC MGP_CASTEiJ_T0074840.1 MGP_CASTEiJ_G0029235.1 mouse_genomes_project 5 132319563 132342683 + MGP_CASTEiJ_P0074840 Sumf2 protein_coding protein_coding MGP_CASTEiJ_T0074841.1 MGP_CASTEiJ_G0029235.1 mouse_genomes_project 5 132319588 132328591 + MGP_CASTEiJ_P0074841 Sumf2 protein_coding protein_coding MGP_CASTEiJ_T0074842.1 MGP_CASTEiJ_G0029235.1 mouse_genomes_project 5 132319597 132328681 + Sumf2 protein_coding processed_transcript MGP_CASTEiJ_T0074843.1 MGP_CASTEiJ_G0029235.1 mouse_genomes_project 5 132319597 132340733 + MGP_CASTEiJ_P0074843 Sumf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074844.1 MGP_CASTEiJ_G0029235.1 mouse_genomes_project 5 132326363 132340095 + Sumf2 protein_coding processed_transcript MGP_CASTEiJ_T0074845.1 MGP_CASTEiJ_G0029235.1 mouse_genomes_project 5 132326363 132340095 + Sumf2 protein_coding processed_transcript MGP_CASTEiJ_T0073901.1 MGP_CASTEiJ_G0029076.1 mouse_genomes_project 5 116778256 116837141 + MGP_CASTEiJ_P0073901 Pxn protein_coding protein_coding MGP_CASTEiJ_T0073902.1 MGP_CASTEiJ_G0029076.1 mouse_genomes_project 5 116778291 116837136 + Pxn protein_coding retained_intron MGP_CASTEiJ_T0073903.1 MGP_CASTEiJ_G0029076.1 mouse_genomes_project 5 116778436 116837141 + MGP_CASTEiJ_P0073903 Pxn protein_coding protein_coding MGP_CASTEiJ_T0073904.1 MGP_CASTEiJ_G0029076.1 mouse_genomes_project 5 116788020 116826046 + Pxn protein_coding processed_transcript MGP_CASTEiJ_T0073905.1 MGP_CASTEiJ_G0029076.1 mouse_genomes_project 5 116793986 116837136 + Pxn protein_coding processed_transcript MGP_CASTEiJ_T0073906.1 MGP_CASTEiJ_G0029076.1 mouse_genomes_project 5 116825109 116826575 + Pxn protein_coding processed_transcript MGP_CASTEiJ_T0073907.1 MGP_CASTEiJ_G0029076.1 mouse_genomes_project 5 116825247 116835657 + MGP_CASTEiJ_P0073907 Pxn protein_coding protein_coding MGP_CASTEiJ_T0073908.1 MGP_CASTEiJ_G0029076.1 mouse_genomes_project 5 116825276 116826111 + Pxn protein_coding retained_intron MGP_CASTEiJ_T0073909.1 MGP_CASTEiJ_G0029076.1 mouse_genomes_project 5 116825958 116830913 + Pxn protein_coding retained_intron MGP_CASTEiJ_T0073910.1 MGP_CASTEiJ_G0029076.1 mouse_genomes_project 5 116826466 116826938 + Pxn protein_coding retained_intron MGP_CASTEiJ_T0073911.1 MGP_CASTEiJ_G0029076.1 mouse_genomes_project 5 116833085 116833940 + Pxn protein_coding retained_intron MGP_CASTEiJ_T0001406.1 MGP_CASTEiJ_G0001335.1 mouse_genomes_project 5 12049636 12051281 + TEC TEC MGP_CASTEiJ_T0102353.1 MGP_CASTEiJ_G0039078.1 mouse_genomes_project 5 87287541 87291315 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0070983.1 MGP_CASTEiJ_G0028520.1 mouse_genomes_project 5 28417759 28433710 - MGP_CASTEiJ_P0070983 Mpv17 protein_coding protein_coding MGP_CASTEiJ_T0070984.1 MGP_CASTEiJ_G0028520.1 mouse_genomes_project 5 28417766 28433681 - MGP_CASTEiJ_P0070984 Mpv17 protein_coding protein_coding MGP_CASTEiJ_T0070985.1 MGP_CASTEiJ_G0028520.1 mouse_genomes_project 5 28418198 28433657 - MGP_CASTEiJ_P0070985 Mpv17 protein_coding protein_coding MGP_CASTEiJ_T0070986.1 MGP_CASTEiJ_G0028520.1 mouse_genomes_project 5 28418560 28433687 - MGP_CASTEiJ_P0070986 Mpv17 protein_coding protein_coding MGP_CASTEiJ_T0070987.1 MGP_CASTEiJ_G0028520.1 mouse_genomes_project 5 28418618 28433611 - MGP_CASTEiJ_P0070987 Mpv17 protein_coding protein_coding MGP_CASTEiJ_T0070988.1 MGP_CASTEiJ_G0028520.1 mouse_genomes_project 5 28418643 28433651 - MGP_CASTEiJ_P0070988 Mpv17 protein_coding protein_coding MGP_CASTEiJ_T0070989.1 MGP_CASTEiJ_G0028520.1 mouse_genomes_project 5 28418711 28424181 - MGP_CASTEiJ_P0070989 Mpv17 protein_coding protein_coding MGP_CASTEiJ_T0070990.1 MGP_CASTEiJ_G0028520.1 mouse_genomes_project 5 28418813 28424201 - Mpv17 protein_coding retained_intron MGP_CASTEiJ_T0070991.1 MGP_CASTEiJ_G0028520.1 mouse_genomes_project 5 28422294 28433677 - Mpv17 protein_coding retained_intron MGP_CASTEiJ_T0070992.1 MGP_CASTEiJ_G0028520.1 mouse_genomes_project 5 28422494 28433680 - MGP_CASTEiJ_P0070992 Mpv17 protein_coding protein_coding MGP_CASTEiJ_T0070994.1 MGP_CASTEiJ_G0028520.1 mouse_genomes_project 5 28423178 28433677 - Mpv17 protein_coding retained_intron MGP_CASTEiJ_T0070995.1 MGP_CASTEiJ_G0028520.1 mouse_genomes_project 5 28423416 28433201 - Mpv17 protein_coding retained_intron MGP_CASTEiJ_T0072656.1 MGP_CASTEiJ_G0028802.1 mouse_genomes_project 5 87779570 87799964 + MGP_CASTEiJ_P0072656 Prr27 protein_coding protein_coding MGP_CASTEiJ_T0072657.1 MGP_CASTEiJ_G0028802.1 mouse_genomes_project 5 87779570 87799964 + MGP_CASTEiJ_P0072657 Prr27 protein_coding protein_coding MGP_CASTEiJ_T0075577.1 MGP_CASTEiJ_G0029371.1 mouse_genomes_project 5 141698708 141717864 + MGP_CASTEiJ_P0075577 Zfp157 protein_coding protein_coding MGP_CASTEiJ_T0075578.1 MGP_CASTEiJ_G0029371.1 mouse_genomes_project 5 141698719 141705326 + Zfp157 protein_coding retained_intron MGP_CASTEiJ_T0075579.1 MGP_CASTEiJ_G0029371.1 mouse_genomes_project 5 141698747 141704356 + Zfp157 protein_coding retained_intron MGP_CASTEiJ_T0075580.1 MGP_CASTEiJ_G0029371.1 mouse_genomes_project 5 141698751 141705372 + Zfp157 protein_coding retained_intron MGP_CASTEiJ_T0075581.1 MGP_CASTEiJ_G0029371.1 mouse_genomes_project 5 141698759 141713486 + MGP_CASTEiJ_P0075581 Zfp157 protein_coding protein_coding MGP_CASTEiJ_T0075582.1 MGP_CASTEiJ_G0029371.1 mouse_genomes_project 5 141698780 141713498 + MGP_CASTEiJ_P0075582 Zfp157 protein_coding protein_coding MGP_CASTEiJ_T0073637.1 MGP_CASTEiJ_G0029023.1 mouse_genomes_project 5 114678461 114682923 - MGP_CASTEiJ_P0073637 Cmklr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073638.1 MGP_CASTEiJ_G0029023.1 mouse_genomes_project 5 114680168 114693555 - MGP_CASTEiJ_P0073638 Cmklr1 protein_coding protein_coding MGP_CASTEiJ_T0073639.1 MGP_CASTEiJ_G0029023.1 mouse_genomes_project 5 114681059 114709533 - MGP_CASTEiJ_P0073639 Cmklr1 protein_coding protein_coding MGP_CASTEiJ_T0073640.1 MGP_CASTEiJ_G0029023.1 mouse_genomes_project 5 114697257 114716305 - Cmklr1 protein_coding processed_transcript MGP_CASTEiJ_T0008197.1 MGP_CASTEiJ_G0006663.1 mouse_genomes_project 5 134022398 134045712 - Gm42590 lincRNA lincRNA MGP_CASTEiJ_T0014578.1 MGP_CASTEiJ_G0012741.1 mouse_genomes_project 5 102452438 102453060 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101123.1 MGP_CASTEiJ_G0038036.1 mouse_genomes_project 5 77010719 77010842 - Gm22011 snoRNA snoRNA MGP_CASTEiJ_T0004502.1 MGP_CASTEiJ_G0003909.1 mouse_genomes_project 5 11259596 11276603 - Gm4128 antisense antisense MGP_CASTEiJ_T0073405.1 MGP_CASTEiJ_G0028981.1 mouse_genomes_project 5 110911461 110917250 + MGP_CASTEiJ_P0073405 Plcxd1 protein_coding protein_coding MGP_CASTEiJ_T0073406.1 MGP_CASTEiJ_G0028981.1 mouse_genomes_project 5 110911914 110913377 + MGP_CASTEiJ_P0073406 Plcxd1 protein_coding protein_coding MGP_CASTEiJ_T0073407.1 MGP_CASTEiJ_G0028981.1 mouse_genomes_project 5 110912051 110919344 + MGP_CASTEiJ_P0073407 Plcxd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073408.1 MGP_CASTEiJ_G0028981.1 mouse_genomes_project 5 110912701 110919349 + Plcxd1 protein_coding processed_transcript MGP_CASTEiJ_T0010370.1 MGP_CASTEiJ_G0008558.1 mouse_genomes_project 5 27435307 27435385 + Mir1960 miRNA miRNA MGP_CASTEiJ_T0073146.1 MGP_CASTEiJ_G0028921.1 mouse_genomes_project 5 104297372 104316396 + MGP_CASTEiJ_P0073146 Dmp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0017423.1 MGP_CASTEiJ_G0014922.1 mouse_genomes_project 5 75548065 75558718 + 4930432L08Rik processed_transcript processed_transcript MGP_CASTEiJ_T0073088.1 MGP_CASTEiJ_G0028908.1 mouse_genomes_project 5 102511830 102939084 + MGP_CASTEiJ_P0073088 Arhgap24 protein_coding protein_coding MGP_CASTEiJ_T0073089.1 MGP_CASTEiJ_G0028908.1 mouse_genomes_project 5 102511969 102707729 + Arhgap24 protein_coding retained_intron MGP_CASTEiJ_T0073090.1 MGP_CASTEiJ_G0028908.1 mouse_genomes_project 5 102795061 102938813 + MGP_CASTEiJ_P0073090 Arhgap24 protein_coding protein_coding MGP_CASTEiJ_T0073091.1 MGP_CASTEiJ_G0028908.1 mouse_genomes_project 5 102850748 102919362 + Arhgap24 protein_coding processed_transcript MGP_CASTEiJ_T0073092.1 MGP_CASTEiJ_G0028908.1 mouse_genomes_project 5 102887568 102939085 + MGP_CASTEiJ_P0073092 Arhgap24 protein_coding protein_coding MGP_CASTEiJ_T0014579.1 MGP_CASTEiJ_G0012742.1 mouse_genomes_project 5 102991928 102992183 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074956.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137015775 137101236 - MGP_CASTEiJ_P0074956 Gtf2i protein_coding protein_coding MGP_CASTEiJ_T0074957.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137015778 137101236 - MGP_CASTEiJ_P0074957 Gtf2i protein_coding protein_coding MGP_CASTEiJ_T0074958.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137015778 137101236 - MGP_CASTEiJ_P0074958 Gtf2i protein_coding protein_coding MGP_CASTEiJ_T0074959.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137015780 137101236 - MGP_CASTEiJ_P0074959 Gtf2i protein_coding protein_coding MGP_CASTEiJ_T0074960.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137015783 137101236 - MGP_CASTEiJ_P0074960 Gtf2i protein_coding protein_coding MGP_CASTEiJ_T0074961.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137015784 137064642 - Gtf2i protein_coding processed_transcript MGP_CASTEiJ_T0074962.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137015784 137080046 - MGP_CASTEiJ_P0074962 Gtf2i protein_coding protein_coding MGP_CASTEiJ_T0074963.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137015784 137080046 - MGP_CASTEiJ_P0074963 Gtf2i protein_coding protein_coding MGP_CASTEiJ_T0074964.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137015784 137080046 - MGP_CASTEiJ_P0074964 Gtf2i protein_coding protein_coding MGP_CASTEiJ_T0074965.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137015784 137080046 - MGP_CASTEiJ_P0074965 Gtf2i protein_coding protein_coding MGP_CASTEiJ_T0074966.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137016438 137021515 - MGP_CASTEiJ_P0074966 Gtf2i protein_coding protein_coding MGP_CASTEiJ_T0074967.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137016784 137020364 - Gtf2i protein_coding retained_intron MGP_CASTEiJ_T0074968.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137017454 137080041 - MGP_CASTEiJ_P0074968 Gtf2i protein_coding protein_coding MGP_CASTEiJ_T0074969.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137017595 137018993 - Gtf2i protein_coding retained_intron MGP_CASTEiJ_T0074970.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137018580 137022698 - Gtf2i protein_coding retained_intron MGP_CASTEiJ_T0074971.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137020704 137021690 - Gtf2i protein_coding retained_intron MGP_CASTEiJ_T0074972.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137033733 137051281 - Gtf2i protein_coding retained_intron MGP_CASTEiJ_T0074973.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137033759 137079991 - MGP_CASTEiJ_P0074973 Gtf2i protein_coding protein_coding MGP_CASTEiJ_T0074974.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137035954 137037288 - Gtf2i protein_coding processed_transcript MGP_CASTEiJ_T0074975.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137037053 137044270 - Gtf2i protein_coding processed_transcript MGP_CASTEiJ_T0074976.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137041494 137053683 - Gtf2i protein_coding processed_transcript MGP_CASTEiJ_T0074977.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137071655 137101023 - MGP_CASTEiJ_P0074977 Gtf2i protein_coding protein_coding MGP_CASTEiJ_T0074978.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137071686 137098508 - MGP_CASTEiJ_P0074978 Gtf2i protein_coding protein_coding MGP_CASTEiJ_T0074979.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137071686 137098801 - MGP_CASTEiJ_P0074979 Gtf2i protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074980.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137071712 137101236 - MGP_CASTEiJ_P0074980 Gtf2i protein_coding protein_coding MGP_CASTEiJ_T0074981.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137071766 137101236 - MGP_CASTEiJ_P0074981 Gtf2i protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074982.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137073797 137093417 - Gtf2i protein_coding retained_intron MGP_CASTEiJ_T0074983.1 MGP_CASTEiJ_G0029258.1 mouse_genomes_project 5 137079442 137081605 - Gtf2i protein_coding retained_intron MGP_CASTEiJ_T0001460.1 MGP_CASTEiJ_G0001386.1 mouse_genomes_project 5 35700950 35701245 - TEC TEC MGP_CASTEiJ_T0001520.1 MGP_CASTEiJ_G0001445.1 mouse_genomes_project 5 47112233 47112615 - TEC TEC MGP_CASTEiJ_T0008009.1 MGP_CASTEiJ_G0006546.1 mouse_genomes_project 5 97166366 97410555 + 4930467D21Rik lincRNA lincRNA MGP_CASTEiJ_T0008010.1 MGP_CASTEiJ_G0006546.1 mouse_genomes_project 5 97166396 97425275 + 4930467D21Rik lincRNA lincRNA MGP_CASTEiJ_T0001476.1 MGP_CASTEiJ_G0001402.1 mouse_genomes_project 5 41954453 41955260 + TEC TEC MGP_CASTEiJ_T0075592.1 MGP_CASTEiJ_G0029374.1 mouse_genomes_project 5 142045060 142104066 + MGP_CASTEiJ_P0075592 Fam20c protein_coding protein_coding MGP_CASTEiJ_T0075593.1 MGP_CASTEiJ_G0029374.1 mouse_genomes_project 5 142045629 142103370 + MGP_CASTEiJ_P0075593 Fam20c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075594.1 MGP_CASTEiJ_G0029374.1 mouse_genomes_project 5 142045633 142049395 + Fam20c protein_coding retained_intron MGP_CASTEiJ_T0075595.1 MGP_CASTEiJ_G0029374.1 mouse_genomes_project 5 142080645 142103148 + Fam20c protein_coding processed_transcript MGP_CASTEiJ_T0075596.1 MGP_CASTEiJ_G0029374.1 mouse_genomes_project 5 142082919 142101368 + Fam20c protein_coding processed_transcript MGP_CASTEiJ_T0075597.1 MGP_CASTEiJ_G0029374.1 mouse_genomes_project 5 142101218 142103394 + Fam20c protein_coding retained_intron MGP_CASTEiJ_T0072675.1 MGP_CASTEiJ_G0028813.1 mouse_genomes_project 5 88373907 88386593 + MGP_CASTEiJ_P0072675 Prol1 protein_coding protein_coding MGP_CASTEiJ_T0001739.1 MGP_CASTEiJ_G0001662.1 mouse_genomes_project 5 123399102 123400186 + TEC TEC MGP_CASTEiJ_T0001459.1 MGP_CASTEiJ_G0001385.1 mouse_genomes_project 5 34793819 34796693 + TEC TEC MGP_CASTEiJ_T0008232.1 MGP_CASTEiJ_G0006692.1 mouse_genomes_project 5 151470784 151471334 + Gm27033 lincRNA lincRNA MGP_CASTEiJ_T0074939.1 MGP_CASTEiJ_G0029254.1 mouse_genomes_project 5 136860250 136913587 + MGP_CASTEiJ_P0074939 Gatsl2 protein_coding protein_coding MGP_CASTEiJ_T0074940.1 MGP_CASTEiJ_G0029254.1 mouse_genomes_project 5 136860542 136913574 + Gatsl2 protein_coding processed_transcript MGP_CASTEiJ_T0074941.1 MGP_CASTEiJ_G0029254.1 mouse_genomes_project 5 136903941 136906552 + Gatsl2 protein_coding retained_intron MGP_CASTEiJ_T0073319.1 MGP_CASTEiJ_G0028962.1 mouse_genomes_project 5 108755467 108781623 - MGP_CASTEiJ_P0073319 Tmed5 protein_coding protein_coding MGP_CASTEiJ_T0073320.1 MGP_CASTEiJ_G0028962.1 mouse_genomes_project 5 108767189 108781641 - MGP_CASTEiJ_P0073320 Tmed5 protein_coding protein_coding MGP_CASTEiJ_T0073321.1 MGP_CASTEiJ_G0028962.1 mouse_genomes_project 5 108770953 108781678 - MGP_CASTEiJ_P0073321 Tmed5 protein_coding protein_coding MGP_CASTEiJ_T0073322.1 MGP_CASTEiJ_G0028962.1 mouse_genomes_project 5 108772378 108781607 - MGP_CASTEiJ_P0073322 Tmed5 protein_coding protein_coding MGP_CASTEiJ_T0073323.1 MGP_CASTEiJ_G0028962.1 mouse_genomes_project 5 108778526 108781591 - MGP_CASTEiJ_P0073323 Tmed5 protein_coding protein_coding MGP_CASTEiJ_T0073324.1 MGP_CASTEiJ_G0028962.1 mouse_genomes_project 5 108778781 108781588 - MGP_CASTEiJ_P0073324 Tmed5 protein_coding protein_coding MGP_CASTEiJ_T0072572.1 MGP_CASTEiJ_G0028775.1 mouse_genomes_project 5 86025643 86097172 - MGP_CASTEiJ_P0072572 Tmprss11c protein_coding protein_coding MGP_CASTEiJ_T0072573.1 MGP_CASTEiJ_G0028775.1 mouse_genomes_project 5 86025914 86097124 - MGP_CASTEiJ_P0072573 Tmprss11c protein_coding protein_coding MGP_CASTEiJ_T0072958.1 MGP_CASTEiJ_G0028884.1 mouse_genomes_project 5 98126005 98632169 + MGP_CASTEiJ_P0072958 1700007G11Rik protein_coding protein_coding MGP_CASTEiJ_T0072959.1 MGP_CASTEiJ_G0028884.1 mouse_genomes_project 5 98126052 98143040 + 1700007G11Rik protein_coding processed_transcript MGP_CASTEiJ_T0072960.1 MGP_CASTEiJ_G0028884.1 mouse_genomes_project 5 98126057 98143435 + 1700007G11Rik protein_coding processed_transcript MGP_CASTEiJ_T0072961.1 MGP_CASTEiJ_G0028884.1 mouse_genomes_project 5 98126071 98632198 + MGP_CASTEiJ_P0072961 1700007G11Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0101151.1 MGP_CASTEiJ_G0038064.1 mouse_genomes_project 5 155253590 155253709 - Gm26013 snoRNA snoRNA MGP_CASTEiJ_T0071682.1 MGP_CASTEiJ_G0028626.1 mouse_genomes_project 5 39461968 39492144 - MGP_CASTEiJ_P0071682 Nkx3-2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071683.1 MGP_CASTEiJ_G0028626.1 mouse_genomes_project 5 39489603 39492639 - MGP_CASTEiJ_P0071683 Nkx3-2 protein_coding protein_coding MGP_CASTEiJ_T0098955.1 MGP_CASTEiJ_G0035879.1 mouse_genomes_project 5 2306644 2309291 - Gm43727 sense_intronic sense_intronic MGP_CASTEiJ_T0101873.1 MGP_CASTEiJ_G0038606.1 mouse_genomes_project 5 92117743 92121756 + unitary_pseudogene retained_intron MGP_CASTEiJ_T0101874.1 MGP_CASTEiJ_G0038606.1 mouse_genomes_project 5 92118244 92126020 + unitary_pseudogene processed_transcript MGP_CASTEiJ_T0101875.1 MGP_CASTEiJ_G0038606.1 mouse_genomes_project 5 92118258 92126939 + unitary_pseudogene processed_transcript MGP_CASTEiJ_T0101876.1 MGP_CASTEiJ_G0038606.1 mouse_genomes_project 5 92118688 92129790 + unitary_pseudogene unitary_pseudogene MGP_CASTEiJ_T0001472.1 MGP_CASTEiJ_G0001398.1 mouse_genomes_project 5 41667478 41668029 + TEC TEC MGP_CASTEiJ_T0014344.1 MGP_CASTEiJ_G0012507.1 mouse_genomes_project 5 901998 904724 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001430.1 MGP_CASTEiJ_G0001358.1 mouse_genomes_project 5 27194359 27198428 - TEC TEC MGP_CASTEiJ_T0004596.1 MGP_CASTEiJ_G0003985.1 mouse_genomes_project 5 87793426 87796999 - Gm42794 antisense antisense MGP_CASTEiJ_T0071045.1 MGP_CASTEiJ_G0028527.1 mouse_genomes_project 5 28525625 28526183 - MGP_CASTEiJ_P0071045 Gm9970 protein_coding protein_coding MGP_CASTEiJ_T0070327.1 MGP_CASTEiJ_G0028398.1 mouse_genomes_project 5 5478183 5605311 - MGP_CASTEiJ_P0070327 Rundc3b protein_coding protein_coding MGP_CASTEiJ_T0070328.1 MGP_CASTEiJ_G0028398.1 mouse_genomes_project 5 5480120 5605311 - MGP_CASTEiJ_P0070328 Rundc3b protein_coding protein_coding MGP_CASTEiJ_T0014462.1 MGP_CASTEiJ_G0012625.1 mouse_genomes_project 5 47325437 47325750 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001687.1 MGP_CASTEiJ_G0001610.1 mouse_genomes_project 5 108316994 108317991 + TEC TEC MGP_CASTEiJ_T0073742.1 MGP_CASTEiJ_G0029042.1 mouse_genomes_project 5 115578484 115592116 - MGP_CASTEiJ_P0073742 Mmab protein_coding protein_coding MGP_CASTEiJ_T0073743.1 MGP_CASTEiJ_G0029042.1 mouse_genomes_project 5 115580676 115592077 - MGP_CASTEiJ_P0073743 Mmab protein_coding protein_coding MGP_CASTEiJ_T0073744.1 MGP_CASTEiJ_G0029042.1 mouse_genomes_project 5 115582101 115592048 - MGP_CASTEiJ_P0073744 Mmab protein_coding protein_coding MGP_CASTEiJ_T0001404.1 MGP_CASTEiJ_G0001333.1 mouse_genomes_project 5 11828251 11834466 + TEC TEC MGP_CASTEiJ_T0001503.1 MGP_CASTEiJ_G0001429.1 mouse_genomes_project 5 46678270 46679449 - TEC TEC MGP_CASTEiJ_T0014692.1 MGP_CASTEiJ_G0012855.1 mouse_genomes_project 5 152907518 152907696 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008099.1 MGP_CASTEiJ_G0006601.1 mouse_genomes_project 5 113626627 113630247 + Gm42864 lincRNA lincRNA MGP_CASTEiJ_T0001708.1 MGP_CASTEiJ_G0001631.1 mouse_genomes_project 5 114942862 114946125 + TEC TEC MGP_CASTEiJ_T0073966.1 MGP_CASTEiJ_G0029085.1 mouse_genomes_project 5 117767789 117787069 - MGP_CASTEiJ_P0073966 Hspb8 protein_coding protein_coding MGP_CASTEiJ_T0073967.1 MGP_CASTEiJ_G0029085.1 mouse_genomes_project 5 117768238 117777038 - Hspb8 protein_coding processed_transcript MGP_CASTEiJ_T0010430.1 MGP_CASTEiJ_G0008618.1 mouse_genomes_project 5 140566073 140566188 - Mir6418 miRNA miRNA MGP_CASTEiJ_T0001606.1 MGP_CASTEiJ_G0001530.1 mouse_genomes_project 5 66613745 66615499 - TEC TEC MGP_CASTEiJ_T0001547.1 MGP_CASTEiJ_G0001472.1 mouse_genomes_project 5 56046826 56049008 + TEC TEC MGP_CASTEiJ_T0010380.1 MGP_CASTEiJ_G0008568.1 mouse_genomes_project 5 49174694 49174789 - Gm44377 miRNA miRNA MGP_CASTEiJ_T0010396.1 MGP_CASTEiJ_G0008584.1 mouse_genomes_project 5 92656450 92656549 + Mir6415 miRNA miRNA MGP_CASTEiJ_T0072071.1 MGP_CASTEiJ_G0028693.1 mouse_genomes_project 5 64626697 64686610 + MGP_CASTEiJ_P0072071 Chrna9 protein_coding protein_coding MGP_CASTEiJ_T0072072.1 MGP_CASTEiJ_G0028693.1 mouse_genomes_project 5 64626704 64688707 + MGP_CASTEiJ_P0072072 Chrna9 protein_coding protein_coding MGP_CASTEiJ_T0072073.1 MGP_CASTEiJ_G0028693.1 mouse_genomes_project 5 64626724 64627699 + Chrna9 protein_coding retained_intron MGP_CASTEiJ_T0072074.1 MGP_CASTEiJ_G0028693.1 mouse_genomes_project 5 64626749 64637568 + Chrna9 protein_coding processed_transcript MGP_CASTEiJ_T0072075.1 MGP_CASTEiJ_G0028693.1 mouse_genomes_project 5 64626751 64637584 + Chrna9 protein_coding processed_transcript MGP_CASTEiJ_T0072076.1 MGP_CASTEiJ_G0028693.1 mouse_genomes_project 5 64684281 64698078 + MGP_CASTEiJ_P0072076 Chrna9 protein_coding protein_coding MGP_CASTEiJ_T0072077.1 MGP_CASTEiJ_G0028693.1 mouse_genomes_project 5 64696648 64697893 + Chrna9 protein_coding processed_transcript MGP_CASTEiJ_T0010364.1 MGP_CASTEiJ_G0008552.1 mouse_genomes_project 5 6382365 6382441 + Mir879 miRNA miRNA MGP_CASTEiJ_T0075768.1 MGP_CASTEiJ_G0029409.1 mouse_genomes_project 5 144240574 144312054 - MGP_CASTEiJ_P0075768 Gna12 protein_coding protein_coding MGP_CASTEiJ_T0074618.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126527269 126587120 - MGP_CASTEiJ_P0074618 Sbno1 protein_coding protein_coding MGP_CASTEiJ_T0074619.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126527275 126586816 - MGP_CASTEiJ_P0074619 Sbno1 protein_coding protein_coding MGP_CASTEiJ_T0074620.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126533083 126572730 - MGP_CASTEiJ_P0074620 Sbno1 protein_coding protein_coding MGP_CASTEiJ_T0074621.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126534663 126543224 - Sbno1 protein_coding retained_intron MGP_CASTEiJ_T0074622.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126544244 126545211 - Sbno1 protein_coding retained_intron MGP_CASTEiJ_T0074623.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126548459 126549109 - Sbno1 protein_coding retained_intron MGP_CASTEiJ_T0074624.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126549105 126550617 - Sbno1 protein_coding retained_intron MGP_CASTEiJ_T0074625.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126551151 126586799 - MGP_CASTEiJ_P0074625 Sbno1 protein_coding protein_coding MGP_CASTEiJ_T0074626.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126551167 126554446 - Sbno1 protein_coding retained_intron MGP_CASTEiJ_T0074627.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126551169 126587207 - MGP_CASTEiJ_P0074627 Sbno1 protein_coding protein_coding MGP_CASTEiJ_T0074628.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126554110 126555322 - Sbno1 protein_coding retained_intron MGP_CASTEiJ_T0074629.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126554110 126587163 - MGP_CASTEiJ_P0074629 Sbno1 protein_coding protein_coding MGP_CASTEiJ_T0074630.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126556797 126586798 - MGP_CASTEiJ_P0074630 Sbno1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074631.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126558170 126563945 - MGP_CASTEiJ_P0074631 Sbno1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074632.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126565351 126586790 - MGP_CASTEiJ_P0074632 Sbno1 protein_coding protein_coding MGP_CASTEiJ_T0074633.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126568352 126586774 - MGP_CASTEiJ_P0074633 Sbno1 protein_coding protein_coding MGP_CASTEiJ_T0074634.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126568584 126579169 - MGP_CASTEiJ_P0074634 Sbno1 protein_coding protein_coding MGP_CASTEiJ_T0074635.1 MGP_CASTEiJ_G0029196.1 mouse_genomes_project 5 126584704 126586748 - Sbno1 protein_coding retained_intron MGP_CASTEiJ_T0076048.1 MGP_CASTEiJ_G0029471.1 mouse_genomes_project 5 150207775 150209920 - MGP_CASTEiJ_P0076048 protein_coding protein_coding MGP_CASTEiJ_T0073572.1 MGP_CASTEiJ_G0029010.1 mouse_genomes_project 5 113299343 113300989 + Hps4 protein_coding processed_transcript MGP_CASTEiJ_T0073573.1 MGP_CASTEiJ_G0029010.1 mouse_genomes_project 5 113299345 113336924 + Hps4 protein_coding retained_intron MGP_CASTEiJ_T0073574.1 MGP_CASTEiJ_G0029010.1 mouse_genomes_project 5 113299350 113301129 + Hps4 protein_coding processed_transcript MGP_CASTEiJ_T0073575.1 MGP_CASTEiJ_G0029010.1 mouse_genomes_project 5 113299535 113336640 + MGP_CASTEiJ_P0073575 Hps4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073577.1 MGP_CASTEiJ_G0029010.1 mouse_genomes_project 5 113327286 113328316 + Hps4 protein_coding retained_intron MGP_CASTEiJ_T0073578.1 MGP_CASTEiJ_G0029010.1 mouse_genomes_project 5 113333849 113336911 + Hps4 protein_coding retained_intron MGP_CASTEiJ_T0008239.1 MGP_CASTEiJ_G0006699.1 mouse_genomes_project 5 153144131 153161375 + Gm15407 lincRNA lincRNA MGP_CASTEiJ_T0072266.1 MGP_CASTEiJ_G0028726.1 mouse_genomes_project 5 71644196 71688241 - MGP_CASTEiJ_P0072266 Txk protein_coding protein_coding MGP_CASTEiJ_T0072267.1 MGP_CASTEiJ_G0028726.1 mouse_genomes_project 5 71644196 71708730 - MGP_CASTEiJ_P0072267 Txk protein_coding protein_coding MGP_CASTEiJ_T0072268.1 MGP_CASTEiJ_G0028726.1 mouse_genomes_project 5 71644196 71708734 - MGP_CASTEiJ_P0072268 Txk protein_coding protein_coding MGP_CASTEiJ_T0072269.1 MGP_CASTEiJ_G0028726.1 mouse_genomes_project 5 71644198 71708730 - MGP_CASTEiJ_P0072269 Txk protein_coding protein_coding MGP_CASTEiJ_T0072270.1 MGP_CASTEiJ_G0028726.1 mouse_genomes_project 5 71644204 71687534 - Txk protein_coding processed_transcript MGP_CASTEiJ_T0072271.1 MGP_CASTEiJ_G0028726.1 mouse_genomes_project 5 71644204 71687534 - Txk protein_coding processed_transcript MGP_CASTEiJ_T0072272.1 MGP_CASTEiJ_G0028726.1 mouse_genomes_project 5 71651296 71708731 - Txk protein_coding retained_intron MGP_CASTEiJ_T0072273.1 MGP_CASTEiJ_G0028726.1 mouse_genomes_project 5 71704511 71708727 - Txk protein_coding retained_intron MGP_CASTEiJ_T0001446.1 MGP_CASTEiJ_G0001372.1 mouse_genomes_project 5 30203138 30204197 - TEC TEC MGP_CASTEiJ_T0017427.1 MGP_CASTEiJ_G0014925.1 mouse_genomes_project 5 108354333 108357009 + A430072P03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017428.1 MGP_CASTEiJ_G0014925.1 mouse_genomes_project 5 108355578 108358680 + A430072P03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0074047.1 MGP_CASTEiJ_G0029101.1 mouse_genomes_project 5 120105692 120276125 + Med13l protein_coding retained_intron MGP_CASTEiJ_T0074048.1 MGP_CASTEiJ_G0029101.1 mouse_genomes_project 5 120105732 120322549 + MGP_CASTEiJ_P0074048 Med13l protein_coding protein_coding MGP_CASTEiJ_T0074049.1 MGP_CASTEiJ_G0029101.1 mouse_genomes_project 5 120105752 120321025 + MGP_CASTEiJ_P0074049 Med13l protein_coding protein_coding MGP_CASTEiJ_T0074050.1 MGP_CASTEiJ_G0029101.1 mouse_genomes_project 5 120106607 120145201 + Med13l protein_coding processed_transcript MGP_CASTEiJ_T0074051.1 MGP_CASTEiJ_G0029101.1 mouse_genomes_project 5 120304425 120321025 + Med13l protein_coding retained_intron MGP_CASTEiJ_T0074052.1 MGP_CASTEiJ_G0029101.1 mouse_genomes_project 5 120307489 120321025 + Med13l protein_coding retained_intron MGP_CASTEiJ_T0001706.1 MGP_CASTEiJ_G0001629.1 mouse_genomes_project 5 114356777 114357979 - TEC TEC MGP_CASTEiJ_T0014642.1 MGP_CASTEiJ_G0012805.1 mouse_genomes_project 5 137264820 137265030 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014453.1 MGP_CASTEiJ_G0012616.1 mouse_genomes_project 5 41631667 41633923 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075543.1 MGP_CASTEiJ_G0029362.1 mouse_genomes_project 5 141270987 141272297 + MGP_CASTEiJ_P0075543 Mblac1 protein_coding protein_coding MGP_CASTEiJ_T0004598.1 MGP_CASTEiJ_G0003987.1 mouse_genomes_project 5 87933784 87936638 + BC051076 antisense antisense MGP_CASTEiJ_T0004599.1 MGP_CASTEiJ_G0003987.1 mouse_genomes_project 5 87933784 87936641 + BC051076 antisense antisense MGP_CASTEiJ_T0075688.1 MGP_CASTEiJ_G0029391.1 mouse_genomes_project 5 143133040 143157642 - MGP_CASTEiJ_P0075688 Ints1 protein_coding protein_coding MGP_CASTEiJ_T0075689.1 MGP_CASTEiJ_G0029391.1 mouse_genomes_project 5 143133043 143136672 - Ints1 protein_coding retained_intron MGP_CASTEiJ_T0075690.1 MGP_CASTEiJ_G0029391.1 mouse_genomes_project 5 143133043 143157607 - MGP_CASTEiJ_P0075690 Ints1 protein_coding protein_coding MGP_CASTEiJ_T0075691.1 MGP_CASTEiJ_G0029391.1 mouse_genomes_project 5 143133044 143136792 - MGP_CASTEiJ_P0075691 Ints1 protein_coding protein_coding MGP_CASTEiJ_T0075692.1 MGP_CASTEiJ_G0029391.1 mouse_genomes_project 5 143143485 143144393 - Ints1 protein_coding retained_intron MGP_CASTEiJ_T0075693.1 MGP_CASTEiJ_G0029391.1 mouse_genomes_project 5 143147212 143150023 - Ints1 protein_coding retained_intron MGP_CASTEiJ_T0075694.1 MGP_CASTEiJ_G0029391.1 mouse_genomes_project 5 143149222 143157643 - Ints1 protein_coding retained_intron MGP_CASTEiJ_T0075695.1 MGP_CASTEiJ_G0029391.1 mouse_genomes_project 5 143149548 143150579 - Ints1 protein_coding retained_intron MGP_CASTEiJ_T0075696.1 MGP_CASTEiJ_G0029391.1 mouse_genomes_project 5 143151498 143153861 - Ints1 protein_coding retained_intron MGP_CASTEiJ_T0075697.1 MGP_CASTEiJ_G0029391.1 mouse_genomes_project 5 143154747 143157643 - MGP_CASTEiJ_P0075697 Ints1 protein_coding protein_coding MGP_CASTEiJ_T0072252.1 MGP_CASTEiJ_G0028721.1 mouse_genomes_project 5 71516035 71518649 - Zar1 protein_coding retained_intron MGP_CASTEiJ_T0072253.1 MGP_CASTEiJ_G0028721.1 mouse_genomes_project 5 71516345 71520505 - MGP_CASTEiJ_P0072253 Zar1 protein_coding protein_coding MGP_CASTEiJ_T0072254.1 MGP_CASTEiJ_G0028721.1 mouse_genomes_project 5 71516348 71519935 - MGP_CASTEiJ_P0072254 Zar1 protein_coding protein_coding MGP_CASTEiJ_T0072556.1 MGP_CASTEiJ_G0028771.1 mouse_genomes_project 5 85780218 85848395 - MGP_CASTEiJ_P0072556 Cenpc1 protein_coding protein_coding MGP_CASTEiJ_T0072557.1 MGP_CASTEiJ_G0028771.1 mouse_genomes_project 5 85819128 85848601 - Cenpc1 protein_coding retained_intron MGP_CASTEiJ_T0072558.1 MGP_CASTEiJ_G0028771.1 mouse_genomes_project 5 85819129 85848597 - Cenpc1 protein_coding retained_intron MGP_CASTEiJ_T0072559.1 MGP_CASTEiJ_G0028771.1 mouse_genomes_project 5 85840236 85848572 - Cenpc1 protein_coding retained_intron MGP_CASTEiJ_T0014516.1 MGP_CASTEiJ_G0012679.1 mouse_genomes_project 5 71978634 71978893 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001584.1 MGP_CASTEiJ_G0001508.1 mouse_genomes_project 5 64544942 64545650 + TEC TEC MGP_CASTEiJ_T0001657.1 MGP_CASTEiJ_G0001580.1 mouse_genomes_project 5 93400935 93403034 + TEC TEC MGP_CASTEiJ_T0008053.1 MGP_CASTEiJ_G0006576.1 mouse_genomes_project 5 107122868 107123381 + Gm29464 lincRNA lincRNA MGP_CASTEiJ_T0098765.1 MGP_CASTEiJ_G0035696.1 mouse_genomes_project 5 92220494 92220623 - Gm22728 scaRNA scaRNA MGP_CASTEiJ_T0070661.1 MGP_CASTEiJ_G0028458.1 mouse_genomes_project 5 21675731 21690364 - MGP_CASTEiJ_P0070661 4931409K22Rik protein_coding protein_coding MGP_CASTEiJ_T0070662.1 MGP_CASTEiJ_G0028458.1 mouse_genomes_project 5 21675731 21690364 - MGP_CASTEiJ_P0070662 4931409K22Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070663.1 MGP_CASTEiJ_G0028458.1 mouse_genomes_project 5 21675747 21687579 - 4931409K22Rik protein_coding retained_intron MGP_CASTEiJ_T0070664.1 MGP_CASTEiJ_G0028458.1 mouse_genomes_project 5 21687580 21690423 - MGP_CASTEiJ_P0070664 4931409K22Rik protein_coding protein_coding MGP_CASTEiJ_T0070665.1 MGP_CASTEiJ_G0028458.1 mouse_genomes_project 5 21687589 21693067 - 4931409K22Rik protein_coding processed_transcript MGP_CASTEiJ_T0098959.1 MGP_CASTEiJ_G0035883.1 mouse_genomes_project 5 28072605 28075494 + Gm19409 sense_intronic sense_intronic MGP_CASTEiJ_T0001445.1 MGP_CASTEiJ_G0001371.1 mouse_genomes_project 5 30075389 30076327 - TEC TEC MGP_CASTEiJ_T0001795.1 MGP_CASTEiJ_G0001717.1 mouse_genomes_project 5 134640988 134644835 - TEC TEC MGP_CASTEiJ_T0014384.1 MGP_CASTEiJ_G0012547.1 mouse_genomes_project 5 19364394 19364766 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001523.1 MGP_CASTEiJ_G0001448.1 mouse_genomes_project 5 47425314 47428422 - TEC TEC MGP_CASTEiJ_T0008002.1 MGP_CASTEiJ_G0006539.1 mouse_genomes_project 5 96610324 96623772 + Gm42601 lincRNA lincRNA MGP_CASTEiJ_T0101622.1 MGP_CASTEiJ_G0038479.1 mouse_genomes_project 5 75407016 75407486 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0071515.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34097602 34201346 - MGP_CASTEiJ_P0071515 Tbc1d14 protein_coding protein_coding MGP_CASTEiJ_T0071516.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34097602 34142154 - MGP_CASTEiJ_P0071516 Tbc1d14 protein_coding protein_coding MGP_CASTEiJ_T0071517.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34097603 34193222 - MGP_CASTEiJ_P0071517 Tbc1d14 protein_coding protein_coding MGP_CASTEiJ_T0071518.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34097603 34200752 - MGP_CASTEiJ_P0071518 Tbc1d14 protein_coding protein_coding MGP_CASTEiJ_T0071519.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34097607 34200741 - MGP_CASTEiJ_P0071519 Tbc1d14 protein_coding protein_coding MGP_CASTEiJ_T0071520.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34097607 34143144 - MGP_CASTEiJ_P0071520 Tbc1d14 protein_coding protein_coding MGP_CASTEiJ_T0071521.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34099738 34205199 - MGP_CASTEiJ_P0071521 Tbc1d14 protein_coding protein_coding MGP_CASTEiJ_T0071522.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34099740 34205191 - MGP_CASTEiJ_P0071522 Tbc1d14 protein_coding protein_coding MGP_CASTEiJ_T0071523.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34099965 34142079 - MGP_CASTEiJ_P0071523 Tbc1d14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071524.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34102088 34129646 - Tbc1d14 protein_coding retained_intron MGP_CASTEiJ_T0071525.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34128456 34142050 - MGP_CASTEiJ_P0071525 Tbc1d14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071526.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34134136 34142038 - Tbc1d14 protein_coding processed_transcript MGP_CASTEiJ_T0071527.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34157910 34201339 - Tbc1d14 protein_coding retained_intron MGP_CASTEiJ_T0071528.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34159746 34182924 - Tbc1d14 protein_coding processed_transcript MGP_CASTEiJ_T0071529.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34159808 34192390 - MGP_CASTEiJ_P0071529 Tbc1d14 protein_coding protein_coding MGP_CASTEiJ_T0071530.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34190050 34205158 - Tbc1d14 protein_coding retained_intron MGP_CASTEiJ_T0071531.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34190414 34205158 - MGP_CASTEiJ_P0071531 Tbc1d14 protein_coding protein_coding MGP_CASTEiJ_T0071532.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34190463 34192161 - MGP_CASTEiJ_P0071532 Tbc1d14 protein_coding protein_coding MGP_CASTEiJ_T0071533.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34190658 34211979 - MGP_CASTEiJ_P0071533 Tbc1d14 protein_coding protein_coding MGP_CASTEiJ_T0071534.1 MGP_CASTEiJ_G0028599.1 mouse_genomes_project 5 34190886 34212004 - MGP_CASTEiJ_P0071534 Tbc1d14 protein_coding protein_coding MGP_CASTEiJ_T0014382.1 MGP_CASTEiJ_G0012545.1 mouse_genomes_project 5 18808211 18808498 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014551.1 MGP_CASTEiJ_G0012714.1 mouse_genomes_project 5 88627166 88627287 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001789.1 MGP_CASTEiJ_G0001711.1 mouse_genomes_project 5 134280395 134283185 - TEC TEC MGP_CASTEiJ_T0014566.1 MGP_CASTEiJ_G0012729.1 mouse_genomes_project 5 97842397 97842708 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001757.1 MGP_CASTEiJ_G0001680.1 mouse_genomes_project 5 125793701 125794229 + TEC TEC MGP_CASTEiJ_T0073202.1 MGP_CASTEiJ_G0028942.1 mouse_genomes_project 5 107157144 107157248 + MGP_CASTEiJ_P0073202 Gm17304 protein_coding protein_coding MGP_CASTEiJ_T0014358.1 MGP_CASTEiJ_G0012521.1 mouse_genomes_project 5 6975515 6976261 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014439.1 MGP_CASTEiJ_G0012602.1 mouse_genomes_project 5 31960363 31960972 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001830.1 MGP_CASTEiJ_G0001751.1 mouse_genomes_project 5 147027169 147028195 + TEC TEC MGP_CASTEiJ_T0098968.1 MGP_CASTEiJ_G0035892.1 mouse_genomes_project 5 106056997 106058314 + C230066G23Rik sense_intronic sense_intronic MGP_CASTEiJ_T0011499.1 MGP_CASTEiJ_G0009665.1 mouse_genomes_project 5 122569919 122624466 + MGP_CASTEiJ_P0011499 Oas1b polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0014485.1 MGP_CASTEiJ_G0012648.1 mouse_genomes_project 5 58381930 58382364 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098617.1 MGP_CASTEiJ_G0035548.1 mouse_genomes_project 5 108020246 108020365 + n-R5s173 rRNA rRNA MGP_CASTEiJ_T0001691.1 MGP_CASTEiJ_G0001614.1 mouse_genomes_project 5 109230065 109233316 - TEC TEC MGP_CASTEiJ_T0001410.1 MGP_CASTEiJ_G0001339.1 mouse_genomes_project 5 13449326 13450789 + TEC TEC MGP_CASTEiJ_T0073441.1 MGP_CASTEiJ_G0028986.1 mouse_genomes_project 5 111046318 111069384 + MGP_CASTEiJ_P0073441 Ankle2 protein_coding protein_coding MGP_CASTEiJ_T0073442.1 MGP_CASTEiJ_G0028986.1 mouse_genomes_project 5 111046318 111070551 + MGP_CASTEiJ_P0073442 Ankle2 protein_coding protein_coding MGP_CASTEiJ_T0073443.1 MGP_CASTEiJ_G0028986.1 mouse_genomes_project 5 111046355 111070547 + MGP_CASTEiJ_P0073443 Ankle2 protein_coding protein_coding MGP_CASTEiJ_T0073444.1 MGP_CASTEiJ_G0028986.1 mouse_genomes_project 5 111046477 111053499 + Ankle2 protein_coding retained_intron MGP_CASTEiJ_T0073445.1 MGP_CASTEiJ_G0028986.1 mouse_genomes_project 5 111052839 111053581 + Ankle2 protein_coding retained_intron MGP_CASTEiJ_T0073446.1 MGP_CASTEiJ_G0028986.1 mouse_genomes_project 5 111064800 111066978 + Ankle2 protein_coding processed_transcript MGP_CASTEiJ_T0072778.1 MGP_CASTEiJ_G0028845.1 mouse_genomes_project 5 91255771 91264637 + MGP_CASTEiJ_P0072778 Areg protein_coding protein_coding MGP_CASTEiJ_T0072779.1 MGP_CASTEiJ_G0028845.1 mouse_genomes_project 5 91255941 91286831 + MGP_CASTEiJ_P0072779 Areg protein_coding unknown_likely_coding MGP_CASTEiJ_T0072780.1 MGP_CASTEiJ_G0028845.1 mouse_genomes_project 5 91255986 91264641 + MGP_CASTEiJ_P0072780 Areg protein_coding unknown_likely_coding MGP_CASTEiJ_T0073112.1 MGP_CASTEiJ_G0028912.1 mouse_genomes_project 5 103709517 103718203 - MGP_CASTEiJ_P0073112 1700016H13Rik protein_coding protein_coding MGP_CASTEiJ_T0073113.1 MGP_CASTEiJ_G0028912.1 mouse_genomes_project 5 103709905 103717925 - MGP_CASTEiJ_P0073113 1700016H13Rik protein_coding protein_coding MGP_CASTEiJ_T0073114.1 MGP_CASTEiJ_G0028912.1 mouse_genomes_project 5 103710063 103717916 - MGP_CASTEiJ_P0073114 1700016H13Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073115.1 MGP_CASTEiJ_G0028912.1 mouse_genomes_project 5 103710069 103717941 - MGP_CASTEiJ_P0073115 1700016H13Rik protein_coding protein_coding MGP_CASTEiJ_T0073116.1 MGP_CASTEiJ_G0028912.1 mouse_genomes_project 5 103710174 103717916 - MGP_CASTEiJ_P0073116 1700016H13Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073117.1 MGP_CASTEiJ_G0028912.1 mouse_genomes_project 5 103710247 103717916 - MGP_CASTEiJ_P0073117 1700016H13Rik protein_coding protein_coding MGP_CASTEiJ_T0073118.1 MGP_CASTEiJ_G0028912.1 mouse_genomes_project 5 103710247 103717917 - MGP_CASTEiJ_P0073118 1700016H13Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071852.1 MGP_CASTEiJ_G0028652.1 mouse_genomes_project 5 50389256 50397541 + MGP_CASTEiJ_P0071852 Sod3 protein_coding protein_coding MGP_CASTEiJ_T0001778.1 MGP_CASTEiJ_G0001700.1 mouse_genomes_project 5 132457682 132459560 + TEC TEC MGP_CASTEiJ_T0014378.1 MGP_CASTEiJ_G0012541.1 mouse_genomes_project 5 18135092 18136491 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007981.1 MGP_CASTEiJ_G0006521.1 mouse_genomes_project 5 76794706 76798063 + 1700017L05Rik lincRNA lincRNA MGP_CASTEiJ_T0001602.1 MGP_CASTEiJ_G0001526.1 mouse_genomes_project 5 65947825 65950511 + TEC TEC MGP_CASTEiJ_T0073337.1 MGP_CASTEiJ_G0028967.1 mouse_genomes_project 5 109108178 109109381 - MGP_CASTEiJ_P0073337 Atp5k protein_coding protein_coding MGP_CASTEiJ_T0073338.1 MGP_CASTEiJ_G0028967.1 mouse_genomes_project 5 109108178 109109381 - MGP_CASTEiJ_P0073338 Atp5k protein_coding protein_coding MGP_CASTEiJ_T0073339.1 MGP_CASTEiJ_G0028967.1 mouse_genomes_project 5 109108180 109109330 - Atp5k protein_coding retained_intron MGP_CASTEiJ_T0001588.1 MGP_CASTEiJ_G0001512.1 mouse_genomes_project 5 64803073 64807607 - TEC TEC MGP_CASTEiJ_T0008043.1 MGP_CASTEiJ_G0006568.1 mouse_genomes_project 5 105885526 105890148 + Gm42749 lincRNA lincRNA MGP_CASTEiJ_T0008044.1 MGP_CASTEiJ_G0006568.1 mouse_genomes_project 5 105889521 105891905 + Gm42749 lincRNA lincRNA MGP_CASTEiJ_T0014544.1 MGP_CASTEiJ_G0012707.1 mouse_genomes_project 5 87520028 87521940 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004664.1 MGP_CASTEiJ_G0004033.1 mouse_genomes_project 5 118756639 118757388 - Gm10399 antisense antisense MGP_CASTEiJ_T0004665.1 MGP_CASTEiJ_G0004033.1 mouse_genomes_project 5 118756887 118757386 - Gm10399 antisense antisense MGP_CASTEiJ_T0001510.1 MGP_CASTEiJ_G0001435.1 mouse_genomes_project 5 46880957 46881800 - TEC TEC MGP_CASTEiJ_T0008157.1 MGP_CASTEiJ_G0006641.1 mouse_genomes_project 5 126171259 126224484 + Gm34086 lincRNA lincRNA MGP_CASTEiJ_T0099905.1 MGP_CASTEiJ_G0036818.1 mouse_genomes_project 5 103982127 103982234 + Gm24897 snRNA snRNA MGP_CASTEiJ_T0014411.1 MGP_CASTEiJ_G0012574.1 mouse_genomes_project 5 24161100 24162763 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071774.1 MGP_CASTEiJ_G0028643.1 mouse_genomes_project 5 43341949 43454014 - MGP_CASTEiJ_P0071774 Fam184b protein_coding protein_coding MGP_CASTEiJ_T0071775.1 MGP_CASTEiJ_G0028643.1 mouse_genomes_project 5 43341950 43348728 - Fam184b protein_coding retained_intron MGP_CASTEiJ_T0004696.1 MGP_CASTEiJ_G0004054.1 mouse_genomes_project 5 126340782 126341687 + Pitpnm2os2 antisense antisense MGP_CASTEiJ_T0004697.1 MGP_CASTEiJ_G0004054.1 mouse_genomes_project 5 126340835 126346214 + Pitpnm2os2 antisense antisense MGP_CASTEiJ_T0004698.1 MGP_CASTEiJ_G0004054.1 mouse_genomes_project 5 126341517 126343966 + Pitpnm2os2 antisense antisense MGP_CASTEiJ_T0001684.1 MGP_CASTEiJ_G0001607.1 mouse_genomes_project 5 107202560 107205466 - TEC TEC MGP_CASTEiJ_T0001382.1 MGP_CASTEiJ_G0001311.1 mouse_genomes_project 5 2701567 2703505 + TEC TEC MGP_CASTEiJ_T0004710.1 MGP_CASTEiJ_G0004063.1 mouse_genomes_project 5 131182121 131190293 + Gm42875 antisense antisense MGP_CASTEiJ_T0074795.1 MGP_CASTEiJ_G0029228.1 mouse_genomes_project 5 131976824 132056219 + MGP_CASTEiJ_P0074795 Sfswap protein_coding protein_coding MGP_CASTEiJ_T0074796.1 MGP_CASTEiJ_G0029228.1 mouse_genomes_project 5 131976843 132054478 + MGP_CASTEiJ_P0074796 Sfswap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074797.1 MGP_CASTEiJ_G0029228.1 mouse_genomes_project 5 131976849 131980246 + Sfswap protein_coding retained_intron MGP_CASTEiJ_T0074798.1 MGP_CASTEiJ_G0029228.1 mouse_genomes_project 5 131976854 132056216 + Sfswap protein_coding processed_transcript MGP_CASTEiJ_T0074799.1 MGP_CASTEiJ_G0029228.1 mouse_genomes_project 5 131977052 131979984 + MGP_CASTEiJ_P0074799 Sfswap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074800.1 MGP_CASTEiJ_G0029228.1 mouse_genomes_project 5 131977997 131978652 + Sfswap protein_coding TEC MGP_CASTEiJ_T0074801.1 MGP_CASTEiJ_G0029228.1 mouse_genomes_project 5 131978762 131979737 + Sfswap protein_coding processed_transcript MGP_CASTEiJ_T0074802.1 MGP_CASTEiJ_G0029228.1 mouse_genomes_project 5 131979576 131980491 + Sfswap protein_coding retained_intron MGP_CASTEiJ_T0074803.1 MGP_CASTEiJ_G0029228.1 mouse_genomes_project 5 131979698 132033900 + MGP_CASTEiJ_P0074803 Sfswap protein_coding unknown_likely_coding MGP_CASTEiJ_T0074804.1 MGP_CASTEiJ_G0029228.1 mouse_genomes_project 5 131979943 131989978 + Sfswap protein_coding retained_intron MGP_CASTEiJ_T0074805.1 MGP_CASTEiJ_G0029228.1 mouse_genomes_project 5 132020486 132029833 + MGP_CASTEiJ_P0074805 Sfswap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074806.1 MGP_CASTEiJ_G0029228.1 mouse_genomes_project 5 132027911 132056216 + Sfswap protein_coding retained_intron MGP_CASTEiJ_T0074807.1 MGP_CASTEiJ_G0029228.1 mouse_genomes_project 5 132029748 132038616 + Sfswap protein_coding processed_transcript MGP_CASTEiJ_T0074808.1 MGP_CASTEiJ_G0029228.1 mouse_genomes_project 5 132039275 132056219 + Sfswap protein_coding retained_intron MGP_CASTEiJ_T0074809.1 MGP_CASTEiJ_G0029228.1 mouse_genomes_project 5 132039616 132054844 + Sfswap protein_coding retained_intron MGP_CASTEiJ_T0074810.1 MGP_CASTEiJ_G0029228.1 mouse_genomes_project 5 132055551 132056219 + Sfswap protein_coding retained_intron MGP_CASTEiJ_T0074902.1 MGP_CASTEiJ_G0029249.1 mouse_genomes_project 5 132778882 132809630 + Tyw1 protein_coding retained_intron MGP_CASTEiJ_T0074903.1 MGP_CASTEiJ_G0029249.1 mouse_genomes_project 5 132780292 132802001 + MGP_CASTEiJ_P0074903 Tyw1 protein_coding protein_coding MGP_CASTEiJ_T0074904.1 MGP_CASTEiJ_G0029249.1 mouse_genomes_project 5 132780292 132873715 + MGP_CASTEiJ_P0074904 Tyw1 protein_coding protein_coding MGP_CASTEiJ_T0074905.1 MGP_CASTEiJ_G0029249.1 mouse_genomes_project 5 132782122 132792576 + MGP_CASTEiJ_P0074905 Tyw1 protein_coding protein_coding MGP_CASTEiJ_T0074132.1 MGP_CASTEiJ_G0029121.1 mouse_genomes_project 5 122715159 122728744 + MGP_CASTEiJ_P0074132 Oas1h protein_coding protein_coding MGP_CASTEiJ_T0074134.1 MGP_CASTEiJ_G0029121.1 mouse_genomes_project 5 122715176 122728378 + MGP_CASTEiJ_P0074134 Oas1h protein_coding protein_coding MGP_CASTEiJ_T0004635.1 MGP_CASTEiJ_G0004010.1 mouse_genomes_project 5 109459942 109464215 + 1700047L14Rik antisense antisense MGP_CASTEiJ_T0014637.1 MGP_CASTEiJ_G0012800.1 mouse_genomes_project 5 126634178 126634543 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014584.1 MGP_CASTEiJ_G0012747.1 mouse_genomes_project 5 105320560 105321067 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001513.1 MGP_CASTEiJ_G0001438.1 mouse_genomes_project 5 46904170 46905503 - TEC TEC MGP_CASTEiJ_T0073895.1 MGP_CASTEiJ_G0029075.1 mouse_genomes_project 5 116736100 116741997 - MGP_CASTEiJ_P0073895 Sirt4 protein_coding protein_coding MGP_CASTEiJ_T0073896.1 MGP_CASTEiJ_G0029075.1 mouse_genomes_project 5 116736100 116742428 - MGP_CASTEiJ_P0073896 Sirt4 protein_coding protein_coding MGP_CASTEiJ_T0073897.1 MGP_CASTEiJ_G0029075.1 mouse_genomes_project 5 116736103 116737754 - Sirt4 protein_coding retained_intron MGP_CASTEiJ_T0073898.1 MGP_CASTEiJ_G0029075.1 mouse_genomes_project 5 116737965 116740626 - Sirt4 protein_coding retained_intron MGP_CASTEiJ_T0073899.1 MGP_CASTEiJ_G0029075.1 mouse_genomes_project 5 116738036 116742045 - Sirt4 protein_coding processed_transcript MGP_CASTEiJ_T0073900.1 MGP_CASTEiJ_G0029075.1 mouse_genomes_project 5 116740231 116742066 - Sirt4 protein_coding retained_intron MGP_CASTEiJ_T0070249.1 MGP_CASTEiJ_G0028388.1 mouse_genomes_project 5 2584980 2667953 - MGP_CASTEiJ_P0070249 Cfap69 protein_coding protein_coding MGP_CASTEiJ_T0070250.1 MGP_CASTEiJ_G0028388.1 mouse_genomes_project 5 2584984 2667922 - MGP_CASTEiJ_P0070250 Cfap69 protein_coding protein_coding MGP_CASTEiJ_T0070251.1 MGP_CASTEiJ_G0028388.1 mouse_genomes_project 5 2586690 2624279 - Cfap69 protein_coding processed_transcript MGP_CASTEiJ_T0070252.1 MGP_CASTEiJ_G0028388.1 mouse_genomes_project 5 2586746 2588212 - MGP_CASTEiJ_P0070252 Cfap69 protein_coding protein_coding MGP_CASTEiJ_T0070253.1 MGP_CASTEiJ_G0028388.1 mouse_genomes_project 5 2586836 2592914 - MGP_CASTEiJ_P0070253 Cfap69 protein_coding protein_coding MGP_CASTEiJ_T0070254.1 MGP_CASTEiJ_G0028388.1 mouse_genomes_project 5 2586879 2617896 - MGP_CASTEiJ_P0070254 Cfap69 protein_coding protein_coding MGP_CASTEiJ_T0070255.1 MGP_CASTEiJ_G0028388.1 mouse_genomes_project 5 2592058 2667757 - MGP_CASTEiJ_P0070255 Cfap69 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070256.1 MGP_CASTEiJ_G0028388.1 mouse_genomes_project 5 2594880 2667922 - MGP_CASTEiJ_P0070256 Cfap69 protein_coding protein_coding MGP_CASTEiJ_T0070257.1 MGP_CASTEiJ_G0028388.1 mouse_genomes_project 5 2599357 2667946 - MGP_CASTEiJ_P0070257 Cfap69 protein_coding protein_coding MGP_CASTEiJ_T0070258.1 MGP_CASTEiJ_G0028388.1 mouse_genomes_project 5 2627811 2628185 - Cfap69 protein_coding retained_intron MGP_CASTEiJ_T0070259.1 MGP_CASTEiJ_G0028388.1 mouse_genomes_project 5 2646164 2667941 - Cfap69 protein_coding retained_intron MGP_CASTEiJ_T0070260.1 MGP_CASTEiJ_G0028388.1 mouse_genomes_project 5 2652951 2666996 - MGP_CASTEiJ_P0070260 Cfap69 protein_coding protein_coding MGP_CASTEiJ_T0001482.1 MGP_CASTEiJ_G0001408.1 mouse_genomes_project 5 42393576 42397367 - TEC TEC MGP_CASTEiJ_T0071227.1 MGP_CASTEiJ_G0028554.1 mouse_genomes_project 5 30876196 30879428 - MGP_CASTEiJ_P0071227 Nkx1-1 protein_coding protein_coding MGP_CASTEiJ_T0070724.1 MGP_CASTEiJ_G0028472.1 mouse_genomes_project 5 22914040 22931145 - MGP_CASTEiJ_P0070724 Xrcc2 protein_coding protein_coding MGP_CASTEiJ_T0070725.1 MGP_CASTEiJ_G0028472.1 mouse_genomes_project 5 22916283 22917671 - Xrcc2 protein_coding processed_transcript MGP_CASTEiJ_T0070726.1 MGP_CASTEiJ_G0028472.1 mouse_genomes_project 5 22921588 22931093 - MGP_CASTEiJ_P0070726 Xrcc2 protein_coding protein_coding MGP_CASTEiJ_T0070727.1 MGP_CASTEiJ_G0028472.1 mouse_genomes_project 5 22922347 22931084 - Xrcc2 protein_coding retained_intron MGP_CASTEiJ_T0011496.1 MGP_CASTEiJ_G0009663.1 mouse_genomes_project 5 92549588 92555462 - MGP_CASTEiJ_P0011496 Cxcl11 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0011497.1 MGP_CASTEiJ_G0009663.1 mouse_genomes_project 5 92549591 92553260 - MGP_CASTEiJ_P0011497 Cxcl11 polymorphic_pseudogene protein_coding MGP_CASTEiJ_T0072845.1 MGP_CASTEiJ_G0009663.1 mouse_genomes_project 5 92550819 92553197 - MGP_CASTEiJ_P0072845 Cxcl11 polymorphic_pseudogene unknown_likely_coding MGP_CASTEiJ_T0075902.1 MGP_CASTEiJ_G0029440.1 mouse_genomes_project 5 147589068 147593221 - MGP_CASTEiJ_P0075902 Ankrd61 protein_coding protein_coding MGP_CASTEiJ_T0075903.1 MGP_CASTEiJ_G0029440.1 mouse_genomes_project 5 147589068 147593257 - MGP_CASTEiJ_P0075903 Ankrd61 protein_coding protein_coding MGP_CASTEiJ_T0075904.1 MGP_CASTEiJ_G0029440.1 mouse_genomes_project 5 147589070 147595858 - MGP_CASTEiJ_P0075904 Ankrd61 protein_coding protein_coding MGP_CASTEiJ_T0014684.1 MGP_CASTEiJ_G0012847.1 mouse_genomes_project 5 150281812 150282682 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014562.1 MGP_CASTEiJ_G0012725.1 mouse_genomes_project 5 93221094 93221668 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008006.1 MGP_CASTEiJ_G0006543.1 mouse_genomes_project 5 96897522 96905250 + Gm43146 lincRNA lincRNA MGP_CASTEiJ_T0075824.1 MGP_CASTEiJ_G0029422.1 mouse_genomes_project 5 146628498 146648989 + MGP_CASTEiJ_P0075824 Fscn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0075825.1 MGP_CASTEiJ_G0029422.1 mouse_genomes_project 5 146628547 146643625 + MGP_CASTEiJ_P0075825 Fscn1 protein_coding protein_coding MGP_CASTEiJ_T0075826.1 MGP_CASTEiJ_G0029422.1 mouse_genomes_project 5 146628580 146643623 + MGP_CASTEiJ_P0075826 Fscn1 protein_coding protein_coding MGP_CASTEiJ_T0075827.1 MGP_CASTEiJ_G0029422.1 mouse_genomes_project 5 146629047 146642613 + MGP_CASTEiJ_P0075827 Fscn1 protein_coding protein_coding MGP_CASTEiJ_T0075828.1 MGP_CASTEiJ_G0029422.1 mouse_genomes_project 5 146631131 146638420 + Fscn1 protein_coding processed_transcript MGP_CASTEiJ_T0075829.1 MGP_CASTEiJ_G0029422.1 mouse_genomes_project 5 146631427 146642396 + Fscn1 protein_coding processed_transcript MGP_CASTEiJ_T0075830.1 MGP_CASTEiJ_G0029422.1 mouse_genomes_project 5 146632716 146638542 + Fscn1 protein_coding processed_transcript MGP_CASTEiJ_T0075831.1 MGP_CASTEiJ_G0029422.1 mouse_genomes_project 5 146637952 146642432 + Fscn1 protein_coding retained_intron MGP_CASTEiJ_T0098966.1 MGP_CASTEiJ_G0035890.1 mouse_genomes_project 5 99370209 99370948 - Gm16227 sense_intronic sense_intronic MGP_CASTEiJ_T0072483.1 MGP_CASTEiJ_G0028759.1 mouse_genomes_project 5 76238870 76268865 + MGP_CASTEiJ_P0072483 Srp72 protein_coding protein_coding MGP_CASTEiJ_T0072484.1 MGP_CASTEiJ_G0028759.1 mouse_genomes_project 5 76240481 76267753 + MGP_CASTEiJ_P0072484 Srp72 protein_coding protein_coding MGP_CASTEiJ_T0072485.1 MGP_CASTEiJ_G0028759.1 mouse_genomes_project 5 76240495 76246327 + Srp72 protein_coding retained_intron MGP_CASTEiJ_T0072486.1 MGP_CASTEiJ_G0028759.1 mouse_genomes_project 5 76246315 76248490 + Srp72 protein_coding retained_intron MGP_CASTEiJ_T0072487.1 MGP_CASTEiJ_G0028759.1 mouse_genomes_project 5 76249870 76262705 + Srp72 protein_coding retained_intron MGP_CASTEiJ_T0072488.1 MGP_CASTEiJ_G0028759.1 mouse_genomes_project 5 76261569 76262462 + Srp72 protein_coding retained_intron MGP_CASTEiJ_T0072489.1 MGP_CASTEiJ_G0028759.1 mouse_genomes_project 5 76262815 76265038 + Srp72 protein_coding retained_intron MGP_CASTEiJ_T0072490.1 MGP_CASTEiJ_G0028759.1 mouse_genomes_project 5 76264523 76268865 + Srp72 protein_coding retained_intron MGP_CASTEiJ_T0072491.1 MGP_CASTEiJ_G0028759.1 mouse_genomes_project 5 76264953 76267275 + Srp72 protein_coding retained_intron MGP_CASTEiJ_T0014494.1 MGP_CASTEiJ_G0012657.1 mouse_genomes_project 5 60493119 60493736 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001716.1 MGP_CASTEiJ_G0001639.1 mouse_genomes_project 5 117220548 117222409 + TEC TEC MGP_CASTEiJ_T0007869.1 MGP_CASTEiJ_G0006439.1 mouse_genomes_project 5 23601666 23640351 - 4930584F24Rik lincRNA lincRNA MGP_CASTEiJ_T0007870.1 MGP_CASTEiJ_G0006439.1 mouse_genomes_project 5 23601668 23640376 - 4930584F24Rik lincRNA lincRNA MGP_CASTEiJ_T0007871.1 MGP_CASTEiJ_G0006439.1 mouse_genomes_project 5 23601670 23640340 - 4930584F24Rik lincRNA lincRNA MGP_CASTEiJ_T0007872.1 MGP_CASTEiJ_G0006439.1 mouse_genomes_project 5 23620342 23640351 - 4930584F24Rik lincRNA lincRNA MGP_CASTEiJ_T0070864.1 MGP_CASTEiJ_G0028502.1 mouse_genomes_project 5 27908757 27920563 + MGP_CASTEiJ_P0070864 Slc35f6 protein_coding protein_coding MGP_CASTEiJ_T0070865.1 MGP_CASTEiJ_G0028502.1 mouse_genomes_project 5 27908765 27919086 + MGP_CASTEiJ_P0070865 Slc35f6 protein_coding protein_coding MGP_CASTEiJ_T0070866.1 MGP_CASTEiJ_G0028502.1 mouse_genomes_project 5 27908777 27914128 + Slc35f6 protein_coding retained_intron MGP_CASTEiJ_T0070867.1 MGP_CASTEiJ_G0028502.1 mouse_genomes_project 5 27908791 27919033 + MGP_CASTEiJ_P0070867 Slc35f6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070868.1 MGP_CASTEiJ_G0028502.1 mouse_genomes_project 5 27908800 27916943 + Slc35f6 protein_coding retained_intron MGP_CASTEiJ_T0070869.1 MGP_CASTEiJ_G0028502.1 mouse_genomes_project 5 27908836 27919033 + MGP_CASTEiJ_P0070869 Slc35f6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070870.1 MGP_CASTEiJ_G0028502.1 mouse_genomes_project 5 27916938 27918644 + MGP_CASTEiJ_P0070870 Slc35f6 protein_coding protein_coding MGP_CASTEiJ_T0004529.1 MGP_CASTEiJ_G0003930.1 mouse_genomes_project 5 29667995 29703240 - Gm36840 antisense antisense MGP_CASTEiJ_T0075732.1 MGP_CASTEiJ_G0029402.1 mouse_genomes_project 5 143967009 143988590 + MGP_CASTEiJ_P0075732 Chst12 protein_coding protein_coding MGP_CASTEiJ_T0075733.1 MGP_CASTEiJ_G0029402.1 mouse_genomes_project 5 143967034 143987018 + MGP_CASTEiJ_P0075733 Chst12 protein_coding protein_coding MGP_CASTEiJ_T0072153.1 MGP_CASTEiJ_G0028702.1 mouse_genomes_project 5 66140933 66193988 + MGP_CASTEiJ_P0072153 Slc30a9 protein_coding protein_coding MGP_CASTEiJ_T0072154.1 MGP_CASTEiJ_G0028702.1 mouse_genomes_project 5 66140933 66193985 + MGP_CASTEiJ_P0072154 Slc30a9 protein_coding protein_coding MGP_CASTEiJ_T0072155.1 MGP_CASTEiJ_G0028702.1 mouse_genomes_project 5 66140942 66143741 + Slc30a9 protein_coding retained_intron MGP_CASTEiJ_T0072156.1 MGP_CASTEiJ_G0028702.1 mouse_genomes_project 5 66140943 66191330 + MGP_CASTEiJ_P0072156 Slc30a9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072157.1 MGP_CASTEiJ_G0028702.1 mouse_genomes_project 5 66141162 66152919 + Slc30a9 protein_coding processed_transcript MGP_CASTEiJ_T0072158.1 MGP_CASTEiJ_G0028702.1 mouse_genomes_project 5 66149713 66177782 + MGP_CASTEiJ_P0072158 Slc30a9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072159.1 MGP_CASTEiJ_G0028702.1 mouse_genomes_project 5 66149739 66164552 + MGP_CASTEiJ_P0072159 Slc30a9 protein_coding protein_coding MGP_CASTEiJ_T0072160.1 MGP_CASTEiJ_G0028702.1 mouse_genomes_project 5 66168177 66188916 + Slc30a9 protein_coding retained_intron MGP_CASTEiJ_T0014657.1 MGP_CASTEiJ_G0012820.1 mouse_genomes_project 5 141531331 141531535 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008082.1 MGP_CASTEiJ_G0006592.1 mouse_genomes_project 5 112653171 112658455 + Gm16019 lincRNA lincRNA MGP_CASTEiJ_T0014605.1 MGP_CASTEiJ_G0012768.1 mouse_genomes_project 5 109989319 109989557 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075138.1 MGP_CASTEiJ_G0029286.1 mouse_genomes_project 5 138272636 138419748 - MGP_CASTEiJ_P0075138 Hip1 protein_coding protein_coding MGP_CASTEiJ_T0075139.1 MGP_CASTEiJ_G0029286.1 mouse_genomes_project 5 138272637 138360170 - MGP_CASTEiJ_P0075139 Hip1 protein_coding protein_coding MGP_CASTEiJ_T0075140.1 MGP_CASTEiJ_G0029286.1 mouse_genomes_project 5 138299183 138300349 - Hip1 protein_coding retained_intron MGP_CASTEiJ_T0075141.1 MGP_CASTEiJ_G0029286.1 mouse_genomes_project 5 138300475 138309778 - MGP_CASTEiJ_P0075141 Hip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075142.1 MGP_CASTEiJ_G0029286.1 mouse_genomes_project 5 138304592 138419753 - Hip1 protein_coding retained_intron MGP_CASTEiJ_T0075143.1 MGP_CASTEiJ_G0029286.1 mouse_genomes_project 5 138308536 138321973 - Hip1 protein_coding processed_transcript MGP_CASTEiJ_T0075144.1 MGP_CASTEiJ_G0029286.1 mouse_genomes_project 5 138319457 138360330 - MGP_CASTEiJ_P0075144 Hip1 protein_coding protein_coding MGP_CASTEiJ_T0075145.1 MGP_CASTEiJ_G0029286.1 mouse_genomes_project 5 138321861 138327739 - Hip1 protein_coding retained_intron MGP_CASTEiJ_T0075146.1 MGP_CASTEiJ_G0029286.1 mouse_genomes_project 5 138328614 138419748 - Hip1 protein_coding retained_intron MGP_CASTEiJ_T0099881.1 MGP_CASTEiJ_G0036794.1 mouse_genomes_project 5 64909296 64909401 - Gm22929 snRNA snRNA MGP_CASTEiJ_T0102345.1 MGP_CASTEiJ_G0039070.1 mouse_genomes_project 5 83547261 83547751 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0001797.1 MGP_CASTEiJ_G0001719.1 mouse_genomes_project 5 134665806 134668039 - TEC TEC MGP_CASTEiJ_T0004711.1 MGP_CASTEiJ_G0004064.1 mouse_genomes_project 5 132740896 132743491 - Gm42469 antisense antisense MGP_CASTEiJ_T0101129.1 MGP_CASTEiJ_G0038042.1 mouse_genomes_project 5 89913653 89913782 + Gm25758 snoRNA snoRNA MGP_CASTEiJ_T0073129.1 MGP_CASTEiJ_G0028915.1 mouse_genomes_project 5 104035584 104064762 - MGP_CASTEiJ_P0073129 Hsd17b13 protein_coding protein_coding MGP_CASTEiJ_T0073130.1 MGP_CASTEiJ_G0028915.1 mouse_genomes_project 5 104047991 104064808 - MGP_CASTEiJ_P0073130 Hsd17b13 protein_coding protein_coding MGP_CASTEiJ_T0073131.1 MGP_CASTEiJ_G0028915.1 mouse_genomes_project 5 104047991 104064724 - MGP_CASTEiJ_P0073131 Hsd17b13 protein_coding protein_coding MGP_CASTEiJ_T0010429.1 MGP_CASTEiJ_G0008617.1 mouse_genomes_project 5 140307035 140307100 - Mir7036 miRNA miRNA MGP_CASTEiJ_T0073228.1 MGP_CASTEiJ_G0028945.1 mouse_genomes_project 5 107543132 107564057 + MGP_CASTEiJ_P0073228 Cdc7 protein_coding protein_coding MGP_CASTEiJ_T0073229.1 MGP_CASTEiJ_G0028945.1 mouse_genomes_project 5 107543132 107564058 + MGP_CASTEiJ_P0073229 Cdc7 protein_coding protein_coding MGP_CASTEiJ_T0073230.1 MGP_CASTEiJ_G0028945.1 mouse_genomes_project 5 107543191 107564058 + MGP_CASTEiJ_P0073230 Cdc7 protein_coding protein_coding MGP_CASTEiJ_T0073231.1 MGP_CASTEiJ_G0028945.1 mouse_genomes_project 5 107543202 107564058 + Cdc7 protein_coding retained_intron MGP_CASTEiJ_T0073232.1 MGP_CASTEiJ_G0028945.1 mouse_genomes_project 5 107543371 107564057 + MGP_CASTEiJ_P0073232 Cdc7 protein_coding protein_coding MGP_CASTEiJ_T0073233.1 MGP_CASTEiJ_G0028945.1 mouse_genomes_project 5 107543828 107562980 + MGP_CASTEiJ_P0073233 Cdc7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073234.1 MGP_CASTEiJ_G0028945.1 mouse_genomes_project 5 107554372 107555014 + Cdc7 protein_coding processed_transcript MGP_CASTEiJ_T0073235.1 MGP_CASTEiJ_G0028945.1 mouse_genomes_project 5 107555059 107558966 + Cdc7 protein_coding retained_intron MGP_CASTEiJ_T0099887.1 MGP_CASTEiJ_G0036800.1 mouse_genomes_project 5 71225025 71225123 - Gm25768 snRNA snRNA MGP_CASTEiJ_T0072283.1 MGP_CASTEiJ_G0028728.1 mouse_genomes_project 5 71883488 71954214 + MGP_CASTEiJ_P0072283 Slain2 protein_coding protein_coding MGP_CASTEiJ_T0072284.1 MGP_CASTEiJ_G0028728.1 mouse_genomes_project 5 71883553 71954196 + MGP_CASTEiJ_P0072284 Slain2 protein_coding protein_coding MGP_CASTEiJ_T0072285.1 MGP_CASTEiJ_G0028728.1 mouse_genomes_project 5 71883600 71887631 + Slain2 protein_coding retained_intron MGP_CASTEiJ_T0072286.1 MGP_CASTEiJ_G0028728.1 mouse_genomes_project 5 71883853 71930938 + MGP_CASTEiJ_P0072286 Slain2 protein_coding protein_coding MGP_CASTEiJ_T0072287.1 MGP_CASTEiJ_G0028728.1 mouse_genomes_project 5 71919019 71949032 + Slain2 protein_coding retained_intron MGP_CASTEiJ_T0075381.1 MGP_CASTEiJ_G0029331.1 mouse_genomes_project 5 140519834 140522635 - MGP_CASTEiJ_P0075381 Epo protein_coding protein_coding MGP_CASTEiJ_T0075382.1 MGP_CASTEiJ_G0029331.1 mouse_genomes_project 5 140519834 140570976 - MGP_CASTEiJ_P0075382 Epo protein_coding protein_coding MGP_CASTEiJ_T0075383.1 MGP_CASTEiJ_G0029331.1 mouse_genomes_project 5 140519840 140522635 - MGP_CASTEiJ_P0075383 Epo protein_coding protein_coding MGP_CASTEiJ_T0075937.1 MGP_CASTEiJ_G0029447.1 mouse_genomes_project 5 147821485 147916838 + MGP_CASTEiJ_P0075937 Lmtk2 protein_coding protein_coding MGP_CASTEiJ_T0072836.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92519275 92585173 + MGP_CASTEiJ_P0072836 Art3 protein_coding protein_coding MGP_CASTEiJ_T0072837.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92519278 92585370 + MGP_CASTEiJ_P0072837 Art3 protein_coding protein_coding MGP_CASTEiJ_T0072838.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92519289 92537127 + Art3 protein_coding processed_transcript MGP_CASTEiJ_T0072839.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92519289 92608764 + MGP_CASTEiJ_P0072839 Art3 protein_coding protein_coding MGP_CASTEiJ_T0072840.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92519289 92608761 + MGP_CASTEiJ_P0072840 Art3 protein_coding protein_coding MGP_CASTEiJ_T0072846.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92566972 92585285 + MGP_CASTEiJ_P0072846 Art3 protein_coding protein_coding MGP_CASTEiJ_T0072847.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92579190 92585256 + MGP_CASTEiJ_P0072847 Art3 protein_coding protein_coding MGP_CASTEiJ_T0072848.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92580067 92584964 + MGP_CASTEiJ_P0072848 Art3 protein_coding protein_coding MGP_CASTEiJ_T0072849.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92580150 92584834 + MGP_CASTEiJ_P0072849 Art3 protein_coding protein_coding MGP_CASTEiJ_T0072850.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92580155 92585215 + MGP_CASTEiJ_P0072850 Art3 protein_coding protein_coding MGP_CASTEiJ_T0072851.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92580447 92608758 + Art3 protein_coding processed_transcript MGP_CASTEiJ_T0072852.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92580447 92608758 + MGP_CASTEiJ_P0072852 Art3 protein_coding protein_coding MGP_CASTEiJ_T0072853.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92580447 92608759 + MGP_CASTEiJ_P0072853 Art3 protein_coding protein_coding MGP_CASTEiJ_T0072854.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92580447 92608758 + MGP_CASTEiJ_P0072854 Art3 protein_coding protein_coding MGP_CASTEiJ_T0072855.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92580447 92608758 + MGP_CASTEiJ_P0072855 Art3 protein_coding protein_coding MGP_CASTEiJ_T0072856.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92580447 92608758 + MGP_CASTEiJ_P0072856 Art3 protein_coding protein_coding MGP_CASTEiJ_T0072857.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92584823 92608758 + MGP_CASTEiJ_P0072857 Art3 protein_coding protein_coding MGP_CASTEiJ_T0072858.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92585297 92608759 + MGP_CASTEiJ_P0072858 Art3 protein_coding protein_coding MGP_CASTEiJ_T0072859.1 MGP_CASTEiJ_G0028858.1 mouse_genomes_project 5 92594973 92608583 + MGP_CASTEiJ_P0072859 Art3 protein_coding protein_coding MGP_CASTEiJ_T0070646.1 MGP_CASTEiJ_G0028454.1 mouse_genomes_project 5 21566982 21569381 - MGP_CASTEiJ_P0070646 Tmub1 protein_coding protein_coding MGP_CASTEiJ_T0070647.1 MGP_CASTEiJ_G0028454.1 mouse_genomes_project 5 21566990 21569152 - MGP_CASTEiJ_P0070647 Tmub1 protein_coding protein_coding MGP_CASTEiJ_T0070648.1 MGP_CASTEiJ_G0028454.1 mouse_genomes_project 5 21566990 21568842 - MGP_CASTEiJ_P0070648 Tmub1 protein_coding protein_coding MGP_CASTEiJ_T0070649.1 MGP_CASTEiJ_G0028454.1 mouse_genomes_project 5 21567573 21569114 - MGP_CASTEiJ_P0070649 Tmub1 protein_coding protein_coding MGP_CASTEiJ_T0070650.1 MGP_CASTEiJ_G0028454.1 mouse_genomes_project 5 21568077 21569318 - MGP_CASTEiJ_P0070650 Tmub1 protein_coding protein_coding MGP_CASTEiJ_T0001794.1 MGP_CASTEiJ_G0001716.1 mouse_genomes_project 5 134626779 134627746 - TEC TEC MGP_CASTEiJ_T0008164.1 MGP_CASTEiJ_G0006647.1 mouse_genomes_project 5 128191638 128195599 - Gm42945 lincRNA lincRNA MGP_CASTEiJ_T0008165.1 MGP_CASTEiJ_G0006647.1 mouse_genomes_project 5 128191652 128199104 - Gm42945 lincRNA lincRNA MGP_CASTEiJ_T0074907.1 MGP_CASTEiJ_G0029251.1 mouse_genomes_project 5 132916881 132923163 - A330070K13Rik protein_coding antisense MGP_CASTEiJ_T0074908.1 MGP_CASTEiJ_G0029251.1 mouse_genomes_project 5 132916954 132923164 - MGP_CASTEiJ_P0074908 A330070K13Rik protein_coding protein_coding MGP_CASTEiJ_T0010402.1 MGP_CASTEiJ_G0008590.1 mouse_genomes_project 5 111517956 111518023 - Mir7026 miRNA miRNA MGP_CASTEiJ_T0001796.1 MGP_CASTEiJ_G0001718.1 mouse_genomes_project 5 134656283 134663097 - TEC TEC MGP_CASTEiJ_T0072047.1 MGP_CASTEiJ_G0028690.1 mouse_genomes_project 5 64270385 64368792 - MGP_CASTEiJ_P0072047 Pds5a protein_coding unknown_likely_coding MGP_CASTEiJ_T0072048.1 MGP_CASTEiJ_G0028690.1 mouse_genomes_project 5 64279606 64368567 - MGP_CASTEiJ_P0072048 Pds5a protein_coding protein_coding MGP_CASTEiJ_T0072049.1 MGP_CASTEiJ_G0028690.1 mouse_genomes_project 5 64279762 64286866 - Pds5a protein_coding retained_intron MGP_CASTEiJ_T0072050.1 MGP_CASTEiJ_G0028690.1 mouse_genomes_project 5 64287187 64316977 - Pds5a protein_coding retained_intron MGP_CASTEiJ_T0072051.1 MGP_CASTEiJ_G0028690.1 mouse_genomes_project 5 64287201 64293857 - Pds5a protein_coding retained_intron MGP_CASTEiJ_T0072052.1 MGP_CASTEiJ_G0028690.1 mouse_genomes_project 5 64287674 64294877 - Pds5a protein_coding retained_intron MGP_CASTEiJ_T0072053.1 MGP_CASTEiJ_G0028690.1 mouse_genomes_project 5 64288141 64295311 - Pds5a protein_coding retained_intron MGP_CASTEiJ_T0072054.1 MGP_CASTEiJ_G0028690.1 mouse_genomes_project 5 64303019 64305457 - Pds5a protein_coding retained_intron MGP_CASTEiJ_T0072055.1 MGP_CASTEiJ_G0028690.1 mouse_genomes_project 5 64308625 64311662 - Pds5a protein_coding retained_intron MGP_CASTEiJ_T0072056.1 MGP_CASTEiJ_G0028690.1 mouse_genomes_project 5 64312519 64368987 - Pds5a protein_coding retained_intron MGP_CASTEiJ_T0072057.1 MGP_CASTEiJ_G0028690.1 mouse_genomes_project 5 64320669 64321819 - Pds5a protein_coding retained_intron MGP_CASTEiJ_T0072058.1 MGP_CASTEiJ_G0028690.1 mouse_genomes_project 5 64333075 64367548 - Pds5a protein_coding retained_intron MGP_CASTEiJ_T0007974.1 MGP_CASTEiJ_G0006515.1 mouse_genomes_project 5 75245206 75259920 + Gm32780 lincRNA lincRNA MGP_CASTEiJ_T0075544.1 MGP_CASTEiJ_G0029363.1 mouse_genomes_project 5 141280180 141369085 - MGP_CASTEiJ_P0075544 protein_coding protein_coding MGP_CASTEiJ_T0010436.1 MGP_CASTEiJ_G0008624.1 mouse_genomes_project 5 143150003 143150068 - Mir7037 miRNA miRNA MGP_CASTEiJ_T0001693.1 MGP_CASTEiJ_G0001616.1 mouse_genomes_project 5 111834232 111834785 + TEC TEC MGP_CASTEiJ_T0070993.1 MGP_CASTEiJ_G0028521.1 mouse_genomes_project 5 28422959 28437598 - Gm29609 protein_coding processed_transcript MGP_CASTEiJ_T0070996.1 MGP_CASTEiJ_G0028521.1 mouse_genomes_project 5 28430621 28461037 - MGP_CASTEiJ_P0070996 Gm29609 protein_coding protein_coding MGP_CASTEiJ_T0017438.1 MGP_CASTEiJ_G0014928.1 mouse_genomes_project 5 125457571 125459044 + 5830487J09Rik processed_transcript sense_intronic MGP_CASTEiJ_T0017439.1 MGP_CASTEiJ_G0014928.1 mouse_genomes_project 5 125458094 125460006 + 5830487J09Rik processed_transcript TEC MGP_CASTEiJ_T0014388.1 MGP_CASTEiJ_G0012551.1 mouse_genomes_project 5 20025014 20025633 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098967.1 MGP_CASTEiJ_G0035891.1 mouse_genomes_project 5 100771450 100771883 - Gm43514 sense_intronic sense_intronic MGP_CASTEiJ_T0014573.1 MGP_CASTEiJ_G0012736.1 mouse_genomes_project 5 100441655 100442089 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014401.1 MGP_CASTEiJ_G0012564.1 mouse_genomes_project 5 22633761 22634011 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074833.1 MGP_CASTEiJ_G0029234.1 mouse_genomes_project 5 132280555 132292213 - MGP_CASTEiJ_P0074833 Psph protein_coding protein_coding MGP_CASTEiJ_T0074834.1 MGP_CASTEiJ_G0029234.1 mouse_genomes_project 5 132284341 132286282 - Psph protein_coding processed_transcript MGP_CASTEiJ_T0074835.1 MGP_CASTEiJ_G0029234.1 mouse_genomes_project 5 132284417 132293969 - MGP_CASTEiJ_P0074835 Psph protein_coding protein_coding MGP_CASTEiJ_T0074836.1 MGP_CASTEiJ_G0029234.1 mouse_genomes_project 5 132285826 132302645 - MGP_CASTEiJ_P0074836 Psph protein_coding protein_coding MGP_CASTEiJ_T0074837.1 MGP_CASTEiJ_G0029234.1 mouse_genomes_project 5 132286538 132293962 - Psph protein_coding retained_intron MGP_CASTEiJ_T0074838.1 MGP_CASTEiJ_G0029234.1 mouse_genomes_project 5 132291636 132302743 - Psph protein_coding retained_intron MGP_CASTEiJ_T0074839.1 MGP_CASTEiJ_G0029234.1 mouse_genomes_project 5 132294136 132302698 - Psph protein_coding processed_transcript MGP_CASTEiJ_T0014568.1 MGP_CASTEiJ_G0012731.1 mouse_genomes_project 5 97863812 97864422 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001522.1 MGP_CASTEiJ_G0001447.1 mouse_genomes_project 5 47309236 47313472 - TEC TEC MGP_CASTEiJ_T0071757.1 MGP_CASTEiJ_G0028639.1 mouse_genomes_project 5 43239834 43257276 - MGP_CASTEiJ_P0071757 Qdpr protein_coding protein_coding MGP_CASTEiJ_T0071758.1 MGP_CASTEiJ_G0028639.1 mouse_genomes_project 5 43239851 43257257 - MGP_CASTEiJ_P0071758 Qdpr protein_coding protein_coding MGP_CASTEiJ_T0071759.1 MGP_CASTEiJ_G0028639.1 mouse_genomes_project 5 43239951 43249582 - Qdpr protein_coding retained_intron MGP_CASTEiJ_T0071760.1 MGP_CASTEiJ_G0028639.1 mouse_genomes_project 5 43240306 43251723 - Qdpr protein_coding processed_transcript MGP_CASTEiJ_T0071761.1 MGP_CASTEiJ_G0028639.1 mouse_genomes_project 5 43245329 43257309 - MGP_CASTEiJ_P0071761 Qdpr protein_coding protein_coding MGP_CASTEiJ_T0071762.1 MGP_CASTEiJ_G0028639.1 mouse_genomes_project 5 43249490 43257293 - MGP_CASTEiJ_P0071762 Qdpr protein_coding protein_coding MGP_CASTEiJ_T0075423.1 MGP_CASTEiJ_G0029338.1 mouse_genomes_project 5 140652276 140658529 - Pcolce protein_coding retained_intron MGP_CASTEiJ_T0075424.1 MGP_CASTEiJ_G0029338.1 mouse_genomes_project 5 140652276 140658608 - MGP_CASTEiJ_P0075424 Pcolce protein_coding protein_coding MGP_CASTEiJ_T0075425.1 MGP_CASTEiJ_G0029338.1 mouse_genomes_project 5 140652278 140652975 - Pcolce protein_coding retained_intron MGP_CASTEiJ_T0075426.1 MGP_CASTEiJ_G0029338.1 mouse_genomes_project 5 140652278 140657589 - MGP_CASTEiJ_P0075426 Pcolce protein_coding protein_coding MGP_CASTEiJ_T0075427.1 MGP_CASTEiJ_G0029338.1 mouse_genomes_project 5 140652281 140658491 - MGP_CASTEiJ_P0075427 Pcolce protein_coding protein_coding MGP_CASTEiJ_T0075428.1 MGP_CASTEiJ_G0029338.1 mouse_genomes_project 5 140654054 140655308 - Pcolce protein_coding retained_intron MGP_CASTEiJ_T0075429.1 MGP_CASTEiJ_G0029338.1 mouse_genomes_project 5 140654121 140658458 - Pcolce protein_coding processed_transcript MGP_CASTEiJ_T0075430.1 MGP_CASTEiJ_G0029338.1 mouse_genomes_project 5 140654477 140657817 - MGP_CASTEiJ_P0075430 Pcolce protein_coding protein_coding MGP_CASTEiJ_T0075431.1 MGP_CASTEiJ_G0029338.1 mouse_genomes_project 5 140654553 140660884 - MGP_CASTEiJ_P0075431 Pcolce protein_coding protein_coding MGP_CASTEiJ_T0075432.1 MGP_CASTEiJ_G0029338.1 mouse_genomes_project 5 140654553 140660906 - MGP_CASTEiJ_P0075432 Pcolce protein_coding protein_coding MGP_CASTEiJ_T0075433.1 MGP_CASTEiJ_G0029338.1 mouse_genomes_project 5 140654836 140658434 - Pcolce protein_coding retained_intron MGP_CASTEiJ_T0075434.1 MGP_CASTEiJ_G0029338.1 mouse_genomes_project 5 140656054 140658441 - Pcolce protein_coding processed_transcript MGP_CASTEiJ_T0075769.1 MGP_CASTEiJ_G0029410.1 mouse_genomes_project 5 144353270 144491708 - MGP_CASTEiJ_P0075769 Card11 protein_coding protein_coding MGP_CASTEiJ_T0075770.1 MGP_CASTEiJ_G0029410.1 mouse_genomes_project 5 144353270 144393788 - MGP_CASTEiJ_P0075770 Card11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0075771.1 MGP_CASTEiJ_G0029410.1 mouse_genomes_project 5 144353272 144362475 - Card11 protein_coding retained_intron MGP_CASTEiJ_T0075772.1 MGP_CASTEiJ_G0029410.1 mouse_genomes_project 5 144392872 144491597 - Card11 protein_coding retained_intron MGP_CASTEiJ_T0074426.1 MGP_CASTEiJ_G0029165.1 mouse_genomes_project 5 125134869 125192505 + Tmem120b protein_coding processed_transcript MGP_CASTEiJ_T0074427.1 MGP_CASTEiJ_G0029165.1 mouse_genomes_project 5 125145627 125193575 + MGP_CASTEiJ_P0074427 Tmem120b protein_coding protein_coding MGP_CASTEiJ_T0074428.1 MGP_CASTEiJ_G0029165.1 mouse_genomes_project 5 125145677 125190964 + MGP_CASTEiJ_P0074428 Tmem120b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074429.1 MGP_CASTEiJ_G0029165.1 mouse_genomes_project 5 125145678 125192827 + MGP_CASTEiJ_P0074429 Tmem120b protein_coding protein_coding MGP_CASTEiJ_T0074430.1 MGP_CASTEiJ_G0029165.1 mouse_genomes_project 5 125145693 125190982 + MGP_CASTEiJ_P0074430 Tmem120b protein_coding protein_coding MGP_CASTEiJ_T0074431.1 MGP_CASTEiJ_G0029165.1 mouse_genomes_project 5 125145703 125179084 + Tmem120b protein_coding retained_intron MGP_CASTEiJ_T0074432.1 MGP_CASTEiJ_G0029165.1 mouse_genomes_project 5 125145722 125174828 + Tmem120b protein_coding retained_intron MGP_CASTEiJ_T0074433.1 MGP_CASTEiJ_G0029165.1 mouse_genomes_project 5 125174361 125191651 + Tmem120b protein_coding retained_intron MGP_CASTEiJ_T0014666.1 MGP_CASTEiJ_G0012829.1 mouse_genomes_project 5 146502706 146503301 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001541.1 MGP_CASTEiJ_G0001466.1 mouse_genomes_project 5 52033223 52034992 + TEC TEC MGP_CASTEiJ_T0074769.1 MGP_CASTEiJ_G0029223.1 mouse_genomes_project 5 131109360 131159251 + MGP_CASTEiJ_P0074769 Piwil1 protein_coding protein_coding MGP_CASTEiJ_T0074770.1 MGP_CASTEiJ_G0029223.1 mouse_genomes_project 5 131145600 131167364 + MGP_CASTEiJ_P0074770 Piwil1 protein_coding protein_coding MGP_CASTEiJ_T0074771.1 MGP_CASTEiJ_G0029223.1 mouse_genomes_project 5 131146916 131166487 + MGP_CASTEiJ_P0074771 Piwil1 protein_coding protein_coding MGP_CASTEiJ_T0070278.1 MGP_CASTEiJ_G0028393.1 mouse_genomes_project 5 4935689 4959527 + MGP_CASTEiJ_P0070278 Steap4 protein_coding protein_coding MGP_CASTEiJ_T0014601.1 MGP_CASTEiJ_G0012764.1 mouse_genomes_project 5 108866130 108866602 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008264.1 MGP_CASTEiJ_G0006715.1 mouse_genomes_project 5 154349206 154350197 - Gm43452 lincRNA lincRNA MGP_CASTEiJ_T0099916.1 MGP_CASTEiJ_G0036829.1 mouse_genomes_project 5 119468388 119468495 - Gm25343 snRNA snRNA MGP_CASTEiJ_T0008230.1 MGP_CASTEiJ_G0006690.1 mouse_genomes_project 5 150836086 150836945 + 4930573C15Rik lincRNA lincRNA MGP_CASTEiJ_T0007880.1 MGP_CASTEiJ_G0006445.1 mouse_genomes_project 5 28840543 28848787 - Gm43660 lincRNA lincRNA MGP_CASTEiJ_T0072971.1 MGP_CASTEiJ_G0028888.1 mouse_genomes_project 5 99061940 99097951 - MGP_CASTEiJ_P0072971 protein_coding protein_coding MGP_CASTEiJ_T0072972.1 MGP_CASTEiJ_G0028888.1 mouse_genomes_project 5 99061940 99097951 - MGP_CASTEiJ_P0072972 protein_coding protein_coding MGP_CASTEiJ_T0072973.1 MGP_CASTEiJ_G0028888.1 mouse_genomes_project 5 99063291 99087748 - MGP_CASTEiJ_P0072973 protein_coding protein_coding MGP_CASTEiJ_T0072974.1 MGP_CASTEiJ_G0028888.1 mouse_genomes_project 5 99072007 99078329 - protein_coding retained_intron MGP_CASTEiJ_T0072584.1 MGP_CASTEiJ_G0028780.1 mouse_genomes_project 5 86475523 86495866 - MGP_CASTEiJ_P0072584 Tmprss11b protein_coding protein_coding MGP_CASTEiJ_T0001749.1 MGP_CASTEiJ_G0001672.1 mouse_genomes_project 5 124589471 124590029 - TEC TEC MGP_CASTEiJ_T0073668.1 MGP_CASTEiJ_G0029030.1 mouse_genomes_project 5 114924983 114995627 - MGP_CASTEiJ_P0073668 Coro1c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073669.1 MGP_CASTEiJ_G0029030.1 mouse_genomes_project 5 114924983 114995680 - MGP_CASTEiJ_P0073669 Coro1c protein_coding protein_coding MGP_CASTEiJ_T0073670.1 MGP_CASTEiJ_G0029030.1 mouse_genomes_project 5 114927795 114933452 - Coro1c protein_coding retained_intron MGP_CASTEiJ_T0073671.1 MGP_CASTEiJ_G0029030.1 mouse_genomes_project 5 114927806 114932455 - Coro1c protein_coding retained_intron MGP_CASTEiJ_T0073672.1 MGP_CASTEiJ_G0029030.1 mouse_genomes_project 5 114928741 114930173 - Coro1c protein_coding retained_intron MGP_CASTEiJ_T0073673.1 MGP_CASTEiJ_G0029030.1 mouse_genomes_project 5 114930663 114932260 - Coro1c protein_coding retained_intron MGP_CASTEiJ_T0073674.1 MGP_CASTEiJ_G0029030.1 mouse_genomes_project 5 114931124 114958704 - Coro1c protein_coding processed_transcript MGP_CASTEiJ_T0073675.1 MGP_CASTEiJ_G0029030.1 mouse_genomes_project 5 114931183 114941474 - Coro1c protein_coding processed_transcript MGP_CASTEiJ_T0073676.1 MGP_CASTEiJ_G0029030.1 mouse_genomes_project 5 114948406 114967187 - MGP_CASTEiJ_P0073676 Coro1c protein_coding protein_coding MGP_CASTEiJ_T0073677.1 MGP_CASTEiJ_G0029030.1 mouse_genomes_project 5 114948464 114966673 - MGP_CASTEiJ_P0073677 Coro1c protein_coding protein_coding MGP_CASTEiJ_T0073678.1 MGP_CASTEiJ_G0029030.1 mouse_genomes_project 5 114961147 114995567 - Coro1c protein_coding retained_intron MGP_CASTEiJ_T0073301.1 MGP_CASTEiJ_G0028960.1 mouse_genomes_project 5 108546594 108623973 - MGP_CASTEiJ_P0073301 Fam69a protein_coding protein_coding MGP_CASTEiJ_T0073302.1 MGP_CASTEiJ_G0028960.1 mouse_genomes_project 5 108548240 108623921 - MGP_CASTEiJ_P0073302 Fam69a protein_coding protein_coding MGP_CASTEiJ_T0073303.1 MGP_CASTEiJ_G0028960.1 mouse_genomes_project 5 108552708 108609582 - MGP_CASTEiJ_P0073303 Fam69a protein_coding protein_coding MGP_CASTEiJ_T0071544.1 MGP_CASTEiJ_G0028603.1 mouse_genomes_project 5 34403264 34441304 - MGP_CASTEiJ_P0071544 Man2b2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071545.1 MGP_CASTEiJ_G0028603.1 mouse_genomes_project 5 34416550 34441319 - MGP_CASTEiJ_P0071545 Man2b2 protein_coding protein_coding MGP_CASTEiJ_T0071546.1 MGP_CASTEiJ_G0028603.1 mouse_genomes_project 5 34418446 34423752 - MGP_CASTEiJ_P0071546 Man2b2 protein_coding protein_coding MGP_CASTEiJ_T0071547.1 MGP_CASTEiJ_G0028603.1 mouse_genomes_project 5 34418452 34428489 - MGP_CASTEiJ_P0071547 Man2b2 protein_coding protein_coding MGP_CASTEiJ_T0014345.1 MGP_CASTEiJ_G0012508.1 mouse_genomes_project 5 1722392 1723224 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014490.1 MGP_CASTEiJ_G0012653.1 mouse_genomes_project 5 59220253 59221022 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014570.1 MGP_CASTEiJ_G0012733.1 mouse_genomes_project 5 99477060 99477869 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102361.1 MGP_CASTEiJ_G0039086.1 mouse_genomes_project 5 143897707 143925967 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0072191.1 MGP_CASTEiJ_G0028710.1 mouse_genomes_project 5 68377609 68403932 - MGP_CASTEiJ_P0072191 Yipf7 protein_coding protein_coding MGP_CASTEiJ_T0072192.1 MGP_CASTEiJ_G0028710.1 mouse_genomes_project 5 68380239 68403873 - MGP_CASTEiJ_P0072192 Yipf7 protein_coding protein_coding MGP_CASTEiJ_T0071535.1 MGP_CASTEiJ_G0028600.1 mouse_genomes_project 5 34220044 34284752 - MGP_CASTEiJ_P0071535 D5Ertd579e protein_coding protein_coding MGP_CASTEiJ_T0071536.1 MGP_CASTEiJ_G0028600.1 mouse_genomes_project 5 34221809 34233290 - MGP_CASTEiJ_P0071536 D5Ertd579e protein_coding protein_coding MGP_CASTEiJ_T0071537.1 MGP_CASTEiJ_G0028600.1 mouse_genomes_project 5 34235515 34240849 - D5Ertd579e protein_coding processed_transcript MGP_CASTEiJ_T0071538.1 MGP_CASTEiJ_G0028600.1 mouse_genomes_project 5 34237418 34284776 - D5Ertd579e protein_coding retained_intron MGP_CASTEiJ_T0071539.1 MGP_CASTEiJ_G0028600.1 mouse_genomes_project 5 34246685 34284752 - D5Ertd579e protein_coding retained_intron MGP_CASTEiJ_T0071540.1 MGP_CASTEiJ_G0028600.1 mouse_genomes_project 5 34260210 34284839 - MGP_CASTEiJ_P0071540 D5Ertd579e protein_coding protein_coding MGP_CASTEiJ_T0071541.1 MGP_CASTEiJ_G0028600.1 mouse_genomes_project 5 34277830 34284785 - D5Ertd579e protein_coding retained_intron MGP_CASTEiJ_T0014554.1 MGP_CASTEiJ_G0012717.1 mouse_genomes_project 5 89570204 89571033 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001452.1 MGP_CASTEiJ_G0001378.1 mouse_genomes_project 5 32058757 32059210 + TEC TEC MGP_CASTEiJ_T0014377.1 MGP_CASTEiJ_G0012540.1 mouse_genomes_project 5 18130216 18130591 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007991.1 MGP_CASTEiJ_G0006528.1 mouse_genomes_project 5 87872048 87877389 + BC037156 lincRNA lincRNA MGP_CASTEiJ_T0014488.1 MGP_CASTEiJ_G0012651.1 mouse_genomes_project 5 58965317 58965738 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072505.1 MGP_CASTEiJ_G0028765.1 mouse_genomes_project 5 76601240 76617558 - MGP_CASTEiJ_P0072505 Noa1 protein_coding protein_coding MGP_CASTEiJ_T0072506.1 MGP_CASTEiJ_G0028765.1 mouse_genomes_project 5 76601322 76617562 - MGP_CASTEiJ_P0072506 Noa1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0072507.1 MGP_CASTEiJ_G0028765.1 mouse_genomes_project 5 76610935 76611790 - Noa1 protein_coding processed_transcript MGP_CASTEiJ_T0072508.1 MGP_CASTEiJ_G0028765.1 mouse_genomes_project 5 76612454 76617533 - Noa1 protein_coding retained_intron MGP_CASTEiJ_T0072509.1 MGP_CASTEiJ_G0028765.1 mouse_genomes_project 5 76613080 76615117 - Noa1 protein_coding processed_transcript MGP_CASTEiJ_T0074813.1 MGP_CASTEiJ_G0029230.1 mouse_genomes_project 5 132139354 132156329 - MGP_CASTEiJ_P0074813 Zfp11 protein_coding protein_coding MGP_CASTEiJ_T0072543.1 MGP_CASTEiJ_G0028769.1 mouse_genomes_project 5 82939111 83022014 - MGP_CASTEiJ_P0072543 Tecrl protein_coding protein_coding MGP_CASTEiJ_T0072544.1 MGP_CASTEiJ_G0028769.1 mouse_genomes_project 5 82953994 83021775 - MGP_CASTEiJ_P0072544 Tecrl protein_coding protein_coding MGP_CASTEiJ_T0101135.1 MGP_CASTEiJ_G0038048.1 mouse_genomes_project 5 99944816 99944899 - Gm26363 snoRNA snoRNA MGP_CASTEiJ_T0099890.1 MGP_CASTEiJ_G0036803.1 mouse_genomes_project 5 74504131 74504236 - Gm22084 snRNA snRNA MGP_CASTEiJ_T0014683.1 MGP_CASTEiJ_G0012846.1 mouse_genomes_project 5 150230736 150231154 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014441.1 MGP_CASTEiJ_G0012604.1 mouse_genomes_project 5 33484717 33485011 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098389.1 MGP_CASTEiJ_G0035320.1 mouse_genomes_project 5 138518888 138519270 - pseudogene pseudogene MGP_CASTEiJ_T0007947.1 MGP_CASTEiJ_G0006494.1 mouse_genomes_project 5 63162365 63179145 - Gm3716 lincRNA lincRNA MGP_CASTEiJ_T0007948.1 MGP_CASTEiJ_G0006494.1 mouse_genomes_project 5 63163736 63171680 - Gm3716 lincRNA lincRNA MGP_CASTEiJ_T0004684.1 MGP_CASTEiJ_G0004046.1 mouse_genomes_project 5 124010093 124014496 + Gm3970 antisense antisense MGP_CASTEiJ_T0073630.1 MGP_CASTEiJ_G0029022.1 mouse_genomes_project 5 114546492 114549291 + Wscd2 protein_coding retained_intron MGP_CASTEiJ_T0073631.1 MGP_CASTEiJ_G0029022.1 mouse_genomes_project 5 114546606 114650387 + MGP_CASTEiJ_P0073631 Wscd2 protein_coding protein_coding MGP_CASTEiJ_T0073632.1 MGP_CASTEiJ_G0029022.1 mouse_genomes_project 5 114546911 114611129 + Wscd2 protein_coding retained_intron MGP_CASTEiJ_T0073633.1 MGP_CASTEiJ_G0029022.1 mouse_genomes_project 5 114606498 114613020 + Wscd2 protein_coding retained_intron MGP_CASTEiJ_T0073634.1 MGP_CASTEiJ_G0029022.1 mouse_genomes_project 5 114607403 114648866 + MGP_CASTEiJ_P0073634 Wscd2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073635.1 MGP_CASTEiJ_G0029022.1 mouse_genomes_project 5 114629014 114650380 + Wscd2 protein_coding processed_transcript MGP_CASTEiJ_T0073636.1 MGP_CASTEiJ_G0029022.1 mouse_genomes_project 5 114636857 114640040 + Wscd2 protein_coding processed_transcript MGP_CASTEiJ_T0007921.1 MGP_CASTEiJ_G0006472.1 mouse_genomes_project 5 42810007 43229786 - lincRNA lincRNA MGP_CASTEiJ_T0007922.1 MGP_CASTEiJ_G0006472.1 mouse_genomes_project 5 42920999 42992963 - lincRNA lincRNA MGP_CASTEiJ_T0014342.1 MGP_CASTEiJ_G0012505.1 mouse_genomes_project 5 272959 273130 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001839.1 MGP_CASTEiJ_G0001760.1 mouse_genomes_project 5 153796802 153798248 + TEC TEC MGP_CASTEiJ_T0074318.1 MGP_CASTEiJ_G0029152.1 mouse_genomes_project 5 124386950 124402161 + MGP_CASTEiJ_P0074318 Gpn3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074319.1 MGP_CASTEiJ_G0029152.1 mouse_genomes_project 5 124387525 124402222 + MGP_CASTEiJ_P0074319 Gpn3 protein_coding protein_coding MGP_CASTEiJ_T0074320.1 MGP_CASTEiJ_G0029152.1 mouse_genomes_project 5 124387601 124398100 + Gpn3 protein_coding retained_intron MGP_CASTEiJ_T0074321.1 MGP_CASTEiJ_G0029152.1 mouse_genomes_project 5 124389058 124401619 + MGP_CASTEiJ_P0074321 Gpn3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074322.1 MGP_CASTEiJ_G0029152.1 mouse_genomes_project 5 124400587 124402222 + MGP_CASTEiJ_P0074322 Gpn3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074323.1 MGP_CASTEiJ_G0029152.1 mouse_genomes_project 5 124400612 124401852 + MGP_CASTEiJ_P0074323 Gpn3 protein_coding protein_coding MGP_CASTEiJ_T0070427.1 MGP_CASTEiJ_G0028417.1 mouse_genomes_project 5 16172698 17700641 + MGP_CASTEiJ_P0070427 Magi2 protein_coding protein_coding MGP_CASTEiJ_T0070428.1 MGP_CASTEiJ_G0028417.1 mouse_genomes_project 5 16172708 16745719 + Magi2 protein_coding processed_transcript MGP_CASTEiJ_T0070429.1 MGP_CASTEiJ_G0028417.1 mouse_genomes_project 5 16172713 17700625 + MGP_CASTEiJ_P0070429 Magi2 protein_coding protein_coding MGP_CASTEiJ_T0070430.1 MGP_CASTEiJ_G0028417.1 mouse_genomes_project 5 16172717 17702496 + MGP_CASTEiJ_P0070430 Magi2 protein_coding protein_coding MGP_CASTEiJ_T0070431.1 MGP_CASTEiJ_G0028417.1 mouse_genomes_project 5 16173059 16176179 + Magi2 protein_coding retained_intron MGP_CASTEiJ_T0070432.1 MGP_CASTEiJ_G0028417.1 mouse_genomes_project 5 16891359 17702515 + MGP_CASTEiJ_P0070432 Magi2 protein_coding protein_coding MGP_CASTEiJ_T0070433.1 MGP_CASTEiJ_G0028417.1 mouse_genomes_project 5 16891586 17700647 + MGP_CASTEiJ_P0070433 Magi2 protein_coding protein_coding MGP_CASTEiJ_T0070434.1 MGP_CASTEiJ_G0028417.1 mouse_genomes_project 5 16891802 17177238 + MGP_CASTEiJ_P0070434 Magi2 protein_coding protein_coding MGP_CASTEiJ_T0070435.1 MGP_CASTEiJ_G0028417.1 mouse_genomes_project 5 17184694 17449506 + Magi2 protein_coding processed_transcript MGP_CASTEiJ_T0070436.1 MGP_CASTEiJ_G0028417.1 mouse_genomes_project 5 17209063 17644310 + Magi2 protein_coding retained_intron MGP_CASTEiJ_T0070437.1 MGP_CASTEiJ_G0028417.1 mouse_genomes_project 5 17517463 17590011 + Magi2 protein_coding processed_transcript MGP_CASTEiJ_T0070438.1 MGP_CASTEiJ_G0028417.1 mouse_genomes_project 5 17591684 17700075 + MGP_CASTEiJ_P0070438 Magi2 protein_coding protein_coding MGP_CASTEiJ_T0070439.1 MGP_CASTEiJ_G0028417.1 mouse_genomes_project 5 17699391 17700525 + Magi2 protein_coding processed_transcript MGP_CASTEiJ_T0073850.1 MGP_CASTEiJ_G0029065.1 mouse_genomes_project 5 116459525 116464524 + MGP_CASTEiJ_P0073850 Pop5 protein_coding protein_coding MGP_CASTEiJ_T0073851.1 MGP_CASTEiJ_G0029065.1 mouse_genomes_project 5 116461522 116463776 + Pop5 protein_coding processed_transcript MGP_CASTEiJ_T0073852.1 MGP_CASTEiJ_G0029065.1 mouse_genomes_project 5 116461575 116468905 + MGP_CASTEiJ_P0073852 Pop5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073853.1 MGP_CASTEiJ_G0029065.1 mouse_genomes_project 5 116461578 116464477 + Pop5 protein_coding processed_transcript MGP_CASTEiJ_T0073854.1 MGP_CASTEiJ_G0029065.1 mouse_genomes_project 5 116461590 116464201 + Pop5 protein_coding retained_intron MGP_CASTEiJ_T0073855.1 MGP_CASTEiJ_G0029065.1 mouse_genomes_project 5 116463874 116464499 + Pop5 protein_coding processed_transcript MGP_CASTEiJ_T0001825.1 MGP_CASTEiJ_G0001746.1 mouse_genomes_project 5 143565656 143567988 - TEC TEC MGP_CASTEiJ_T0099919.1 MGP_CASTEiJ_G0036832.1 mouse_genomes_project 5 124521696 124521797 + Gm22965 snRNA snRNA MGP_CASTEiJ_T0074745.1 MGP_CASTEiJ_G0029218.1 mouse_genomes_project 5 129552199 129886298 + MGP_CASTEiJ_P0074745 Tmem132c protein_coding protein_coding MGP_CASTEiJ_T0074746.1 MGP_CASTEiJ_G0029218.1 mouse_genomes_project 5 129552217 129593802 + Tmem132c protein_coding processed_transcript MGP_CASTEiJ_T0074747.1 MGP_CASTEiJ_G0029218.1 mouse_genomes_project 5 129870331 129885372 + Tmem132c protein_coding processed_transcript MGP_CASTEiJ_T0074748.1 MGP_CASTEiJ_G0029218.1 mouse_genomes_project 5 129872082 129884992 + MGP_CASTEiJ_P0074748 Tmem132c protein_coding protein_coding MGP_CASTEiJ_T0071856.1 MGP_CASTEiJ_G0028654.1 mouse_genomes_project 5 50570978 50603781 - MGP_CASTEiJ_P0071856 Lgi2 protein_coding protein_coding MGP_CASTEiJ_T0071857.1 MGP_CASTEiJ_G0028654.1 mouse_genomes_project 5 50570978 50603941 - MGP_CASTEiJ_P0071857 Lgi2 protein_coding protein_coding MGP_CASTEiJ_T0075622.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142539273 142588927 + MGP_CASTEiJ_P0075622 Sun1 protein_coding protein_coding MGP_CASTEiJ_T0075623.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142539307 142566130 + Sun1 protein_coding retained_intron MGP_CASTEiJ_T0075624.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142539307 142566131 + MGP_CASTEiJ_P0075624 Sun1 protein_coding protein_coding MGP_CASTEiJ_T0075625.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142539309 142561531 + MGP_CASTEiJ_P0075625 Sun1 protein_coding protein_coding MGP_CASTEiJ_T0075626.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142539311 142564393 + MGP_CASTEiJ_P0075626 Sun1 protein_coding protein_coding MGP_CASTEiJ_T0075627.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142539315 142554117 + Sun1 protein_coding retained_intron MGP_CASTEiJ_T0075628.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142539320 142587634 + MGP_CASTEiJ_P0075628 Sun1 protein_coding protein_coding MGP_CASTEiJ_T0075629.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142539325 142564399 + MGP_CASTEiJ_P0075629 Sun1 protein_coding protein_coding MGP_CASTEiJ_T0075630.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142550255 142550603 + Sun1 protein_coding processed_transcript MGP_CASTEiJ_T0075631.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142550287 142563190 + MGP_CASTEiJ_P0075631 Sun1 protein_coding protein_coding MGP_CASTEiJ_T0075632.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142550341 142587728 + MGP_CASTEiJ_P0075632 Sun1 protein_coding protein_coding MGP_CASTEiJ_T0075633.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142550581 142563154 + MGP_CASTEiJ_P0075633 Sun1 protein_coding protein_coding MGP_CASTEiJ_T0075634.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142561469 142568628 + Sun1 protein_coding processed_transcript MGP_CASTEiJ_T0075635.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142563068 142567736 + MGP_CASTEiJ_P0075635 Sun1 protein_coding protein_coding MGP_CASTEiJ_T0075636.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142564537 142573404 + MGP_CASTEiJ_P0075636 Sun1 protein_coding protein_coding MGP_CASTEiJ_T0075637.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142568899 142572329 + Sun1 protein_coding retained_intron MGP_CASTEiJ_T0075638.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142573355 142584520 + MGP_CASTEiJ_P0075638 Sun1 protein_coding protein_coding MGP_CASTEiJ_T0075639.1 MGP_CASTEiJ_G0029379.1 mouse_genomes_project 5 142579023 142587591 + MGP_CASTEiJ_P0075639 Sun1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0010405.1 MGP_CASTEiJ_G0008593.1 mouse_genomes_project 5 114375894 114375950 - Mir7230 miRNA miRNA MGP_CASTEiJ_T0070930.1 MGP_CASTEiJ_G0028512.1 mouse_genomes_project 5 28221967 28224866 - MGP_CASTEiJ_P0070930 Preb protein_coding protein_coding MGP_CASTEiJ_T0070931.1 MGP_CASTEiJ_G0028512.1 mouse_genomes_project 5 28222064 28226221 - MGP_CASTEiJ_P0070931 Preb protein_coding protein_coding MGP_CASTEiJ_T0070932.1 MGP_CASTEiJ_G0028512.1 mouse_genomes_project 5 28222335 28224212 - Preb protein_coding processed_transcript MGP_CASTEiJ_T0070933.1 MGP_CASTEiJ_G0028512.1 mouse_genomes_project 5 28222461 28223158 - Preb protein_coding retained_intron MGP_CASTEiJ_T0070934.1 MGP_CASTEiJ_G0028512.1 mouse_genomes_project 5 28222906 28224789 - Preb protein_coding retained_intron MGP_CASTEiJ_T0070935.1 MGP_CASTEiJ_G0028512.1 mouse_genomes_project 5 28224100 28224787 - Preb protein_coding retained_intron MGP_CASTEiJ_T0070936.1 MGP_CASTEiJ_G0028512.1 mouse_genomes_project 5 28224248 28225351 - Preb protein_coding retained_intron MGP_CASTEiJ_T0070937.1 MGP_CASTEiJ_G0028512.1 mouse_genomes_project 5 28224835 28226386 - Preb protein_coding processed_transcript MGP_CASTEiJ_T0070938.1 MGP_CASTEiJ_G0028512.1 mouse_genomes_project 5 28225005 28225671 - Preb protein_coding processed_transcript MGP_CASTEiJ_T0070939.1 MGP_CASTEiJ_G0028512.1 mouse_genomes_project 5 28225063 28226368 - Preb protein_coding retained_intron MGP_CASTEiJ_T0070940.1 MGP_CASTEiJ_G0028512.1 mouse_genomes_project 5 28225485 28226378 - Preb protein_coding processed_transcript MGP_CASTEiJ_T0101612.1 MGP_CASTEiJ_G0038471.1 mouse_genomes_project 5 43595718 43596600 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0001819.1 MGP_CASTEiJ_G0001740.1 mouse_genomes_project 5 139286685 139291132 - TEC TEC MGP_CASTEiJ_T0070493.1 MGP_CASTEiJ_G0028430.1 mouse_genomes_project 5 18796887 18820485 + Pmpcb protein_coding retained_intron MGP_CASTEiJ_T0070494.1 MGP_CASTEiJ_G0028430.1 mouse_genomes_project 5 18796887 18820485 + MGP_CASTEiJ_P0070494 Pmpcb protein_coding protein_coding MGP_CASTEiJ_T0070495.1 MGP_CASTEiJ_G0028430.1 mouse_genomes_project 5 18797654 18802894 + MGP_CASTEiJ_P0070495 Pmpcb protein_coding protein_coding MGP_CASTEiJ_T0070496.1 MGP_CASTEiJ_G0028430.1 mouse_genomes_project 5 18798492 18801201 + Pmpcb protein_coding retained_intron MGP_CASTEiJ_T0070497.1 MGP_CASTEiJ_G0028430.1 mouse_genomes_project 5 18802868 18803669 + Pmpcb protein_coding retained_intron MGP_CASTEiJ_T0070498.1 MGP_CASTEiJ_G0028430.1 mouse_genomes_project 5 18819851 18820479 + Pmpcb protein_coding retained_intron MGP_CASTEiJ_T0070499.1 MGP_CASTEiJ_G0028430.1 mouse_genomes_project 5 18819977 18820485 + MGP_CASTEiJ_P0070499 Pmpcb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070500.1 MGP_CASTEiJ_G0028430.1 mouse_genomes_project 5 18820113 18820479 + Pmpcb protein_coding retained_intron MGP_CASTEiJ_T0001392.1 MGP_CASTEiJ_G0001321.1 mouse_genomes_project 5 7834524 7837115 - TEC TEC MGP_CASTEiJ_T0074649.1 MGP_CASTEiJ_G0029199.1 mouse_genomes_project 5 126645165 126697803 - MGP_CASTEiJ_P0074649 Rilpl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0074653.1 MGP_CASTEiJ_G0029199.1 mouse_genomes_project 5 126655198 126698110 - MGP_CASTEiJ_P0074653 Rilpl1 protein_coding protein_coding MGP_CASTEiJ_T0074654.1 MGP_CASTEiJ_G0029199.1 mouse_genomes_project 5 126655655 126665774 - MGP_CASTEiJ_P0074654 Rilpl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074655.1 MGP_CASTEiJ_G0029199.1 mouse_genomes_project 5 126655770 126679004 - MGP_CASTEiJ_P0074655 Rilpl1 protein_coding protein_coding MGP_CASTEiJ_T0074656.1 MGP_CASTEiJ_G0029199.1 mouse_genomes_project 5 126655782 126679088 - MGP_CASTEiJ_P0074656 Rilpl1 protein_coding protein_coding MGP_CASTEiJ_T0076022.1 MGP_CASTEiJ_G0029463.1 mouse_genomes_project 5 149018404 149026744 - MGP_CASTEiJ_P0076022 Atp5j2 protein_coding protein_coding MGP_CASTEiJ_T0076023.1 MGP_CASTEiJ_G0029463.1 mouse_genomes_project 5 149018412 149026274 - MGP_CASTEiJ_P0076023 Atp5j2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076024.1 MGP_CASTEiJ_G0029463.1 mouse_genomes_project 5 149018415 149026274 - MGP_CASTEiJ_P0076024 Atp5j2 protein_coding protein_coding MGP_CASTEiJ_T0076025.1 MGP_CASTEiJ_G0029463.1 mouse_genomes_project 5 149019092 149026193 - MGP_CASTEiJ_P0076025 Atp5j2 protein_coding protein_coding MGP_CASTEiJ_T0076026.1 MGP_CASTEiJ_G0029463.1 mouse_genomes_project 5 149024112 149026210 - Atp5j2 protein_coding retained_intron MGP_CASTEiJ_T0074089.1 MGP_CASTEiJ_G0029110.1 mouse_genomes_project 5 122269214 122331455 - MGP_CASTEiJ_P0074089 Tpcn1 protein_coding protein_coding MGP_CASTEiJ_T0074090.1 MGP_CASTEiJ_G0029110.1 mouse_genomes_project 5 122284790 122331394 - Tpcn1 protein_coding retained_intron MGP_CASTEiJ_T0074091.1 MGP_CASTEiJ_G0029110.1 mouse_genomes_project 5 122324447 122331376 - Tpcn1 protein_coding retained_intron MGP_CASTEiJ_T0074092.1 MGP_CASTEiJ_G0029110.1 mouse_genomes_project 5 122329939 122331381 - Tpcn1 protein_coding retained_intron MGP_CASTEiJ_T0007892.1 MGP_CASTEiJ_G0006453.1 mouse_genomes_project 5 34037226 34060220 - 2210406O10Rik lincRNA lincRNA MGP_CASTEiJ_T0007893.1 MGP_CASTEiJ_G0006453.1 mouse_genomes_project 5 34049346 34060211 - 2210406O10Rik lincRNA lincRNA MGP_CASTEiJ_T0007894.1 MGP_CASTEiJ_G0006453.1 mouse_genomes_project 5 34051276 34060210 - 2210406O10Rik lincRNA lincRNA MGP_CASTEiJ_T0007895.1 MGP_CASTEiJ_G0006453.1 mouse_genomes_project 5 34053846 34060252 - 2210406O10Rik lincRNA lincRNA MGP_CASTEiJ_T0071858.1 MGP_CASTEiJ_G0028655.1 mouse_genomes_project 5 50686212 50718429 - MGP_CASTEiJ_P0071858 Sepsecs protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071859.1 MGP_CASTEiJ_G0028655.1 mouse_genomes_project 5 50686212 50718429 - MGP_CASTEiJ_P0071859 Sepsecs protein_coding protein_coding MGP_CASTEiJ_T0071860.1 MGP_CASTEiJ_G0028655.1 mouse_genomes_project 5 50687301 50714709 - MGP_CASTEiJ_P0071860 Sepsecs protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071861.1 MGP_CASTEiJ_G0028655.1 mouse_genomes_project 5 50692768 50694609 - Sepsecs protein_coding retained_intron MGP_CASTEiJ_T0071862.1 MGP_CASTEiJ_G0028655.1 mouse_genomes_project 5 50704839 50718336 - MGP_CASTEiJ_P0071862 Sepsecs protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074568.1 MGP_CASTEiJ_G0029188.1 mouse_genomes_project 5 126141467 126171169 - MGP_CASTEiJ_P0074568 Vps37b protein_coding protein_coding MGP_CASTEiJ_T0074569.1 MGP_CASTEiJ_G0029188.1 mouse_genomes_project 5 126142966 126148506 - Vps37b protein_coding processed_transcript MGP_CASTEiJ_T0074570.1 MGP_CASTEiJ_G0029188.1 mouse_genomes_project 5 126164860 126171157 - Vps37b protein_coding processed_transcript MGP_CASTEiJ_T0098615.1 MGP_CASTEiJ_G0035546.1 mouse_genomes_project 5 91004304 91004421 + Gm22816 rRNA rRNA MGP_CASTEiJ_T0074554.1 MGP_CASTEiJ_G0029185.1 mouse_genomes_project 5 126059588 126072077 + MGP_CASTEiJ_P0074554 Gm43518 protein_coding protein_coding MGP_CASTEiJ_T0076092.1 MGP_CASTEiJ_G0029481.1 mouse_genomes_project 5 151187912 151249651 - MGP_CASTEiJ_P0076092 Lnx2 protein_coding protein_coding MGP_CASTEiJ_T0076093.1 MGP_CASTEiJ_G0029481.1 mouse_genomes_project 5 151189526 151190304 - Lnx2 protein_coding processed_transcript MGP_CASTEiJ_T0076094.1 MGP_CASTEiJ_G0029481.1 mouse_genomes_project 5 151196577 151215590 - MGP_CASTEiJ_P0076094 Lnx2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014430.1 MGP_CASTEiJ_G0012593.1 mouse_genomes_project 5 30246873 30247159 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071671.1 MGP_CASTEiJ_G0028623.1 mouse_genomes_project 5 36403068 36582929 - MGP_CASTEiJ_P0071671 Clnk protein_coding protein_coding MGP_CASTEiJ_T0071672.1 MGP_CASTEiJ_G0028623.1 mouse_genomes_project 5 36403068 36582929 - MGP_CASTEiJ_P0071672 Clnk protein_coding protein_coding MGP_CASTEiJ_T0001461.1 MGP_CASTEiJ_G0001387.1 mouse_genomes_project 5 37161956 37163511 - TEC TEC MGP_CASTEiJ_T0072666.1 MGP_CASTEiJ_G0028805.1 mouse_genomes_project 5 87941650 87945079 + MGP_CASTEiJ_P0072666 2310003L06Rik protein_coding protein_coding MGP_CASTEiJ_T0001836.1 MGP_CASTEiJ_G0001757.1 mouse_genomes_project 5 151645063 151646106 + TEC TEC MGP_CASTEiJ_T0001582.1 MGP_CASTEiJ_G0001506.1 mouse_genomes_project 5 64538843 64540455 + TEC TEC MGP_CASTEiJ_T0001457.1 MGP_CASTEiJ_G0001383.1 mouse_genomes_project 5 34238271 34240849 + TEC TEC MGP_CASTEiJ_T0099912.1 MGP_CASTEiJ_G0036825.1 mouse_genomes_project 5 114051092 114051201 + Gm22740 snRNA snRNA MGP_CASTEiJ_T0004582.1 MGP_CASTEiJ_G0003973.1 mouse_genomes_project 5 70588775 70609779 - Gm43477 antisense antisense MGP_CASTEiJ_T0014478.1 MGP_CASTEiJ_G0012641.1 mouse_genomes_project 5 55613021 55614478 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073331.1 MGP_CASTEiJ_G0028965.1 mouse_genomes_project 5 108978091 109017456 + MGP_CASTEiJ_P0073331 Pigg protein_coding protein_coding MGP_CASTEiJ_T0073332.1 MGP_CASTEiJ_G0028965.1 mouse_genomes_project 5 108978091 109016351 + MGP_CASTEiJ_P0073332 Pigg protein_coding protein_coding MGP_CASTEiJ_T0073333.1 MGP_CASTEiJ_G0028965.1 mouse_genomes_project 5 108978118 109016356 + MGP_CASTEiJ_P0073333 Pigg protein_coding protein_coding MGP_CASTEiJ_T0014539.1 MGP_CASTEiJ_G0012702.1 mouse_genomes_project 5 86834438 86836020 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004648.1 MGP_CASTEiJ_G0004021.1 mouse_genomes_project 5 114925148 114925664 + Gm17122 antisense antisense MGP_CASTEiJ_T0072914.1 MGP_CASTEiJ_G0028872.1 mouse_genomes_project 5 95775128 95859953 - MGP_CASTEiJ_P0072914 Cnot6l protein_coding protein_coding MGP_CASTEiJ_T0072915.1 MGP_CASTEiJ_G0028872.1 mouse_genomes_project 5 95777907 95789225 - Cnot6l protein_coding retained_intron MGP_CASTEiJ_T0072916.1 MGP_CASTEiJ_G0028872.1 mouse_genomes_project 5 95777920 95859069 - MGP_CASTEiJ_P0072916 Cnot6l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072917.1 MGP_CASTEiJ_G0028872.1 mouse_genomes_project 5 95778068 95859069 - MGP_CASTEiJ_P0072917 Cnot6l protein_coding protein_coding MGP_CASTEiJ_T0072918.1 MGP_CASTEiJ_G0028872.1 mouse_genomes_project 5 95807748 95827645 - Cnot6l protein_coding retained_intron MGP_CASTEiJ_T0072919.1 MGP_CASTEiJ_G0028872.1 mouse_genomes_project 5 95808437 95859056 - MGP_CASTEiJ_P0072919 Cnot6l protein_coding protein_coding MGP_CASTEiJ_T0072920.1 MGP_CASTEiJ_G0028872.1 mouse_genomes_project 5 95827645 95859185 - MGP_CASTEiJ_P0072920 Cnot6l protein_coding protein_coding MGP_CASTEiJ_T0072921.1 MGP_CASTEiJ_G0028872.1 mouse_genomes_project 5 95827681 95862847 - MGP_CASTEiJ_P0072921 Cnot6l protein_coding protein_coding MGP_CASTEiJ_T0072922.1 MGP_CASTEiJ_G0028872.1 mouse_genomes_project 5 95827792 95859077 - MGP_CASTEiJ_P0072922 Cnot6l protein_coding protein_coding MGP_CASTEiJ_T0101109.1 MGP_CASTEiJ_G0038022.1 mouse_genomes_project 5 37244138 37244267 - Gm25377 snoRNA snoRNA MGP_CASTEiJ_T0017429.1 MGP_CASTEiJ_G0014926.1 mouse_genomes_project 5 110970478 110977974 - Gm15787 processed_transcript antisense MGP_CASTEiJ_T0017430.1 MGP_CASTEiJ_G0014926.1 mouse_genomes_project 5 110971091 110993529 - Gm15787 processed_transcript processed_transcript MGP_CASTEiJ_T0017431.1 MGP_CASTEiJ_G0014926.1 mouse_genomes_project 5 110977984 110993468 - Gm15787 processed_transcript antisense MGP_CASTEiJ_T0017432.1 MGP_CASTEiJ_G0014926.1 mouse_genomes_project 5 110983334 110993529 - Gm15787 processed_transcript antisense MGP_CASTEiJ_T0017433.1 MGP_CASTEiJ_G0014926.1 mouse_genomes_project 5 110984021 110993491 - Gm15787 processed_transcript antisense MGP_CASTEiJ_T0017434.1 MGP_CASTEiJ_G0014926.1 mouse_genomes_project 5 110984082 110985721 - Gm15787 processed_transcript antisense MGP_CASTEiJ_T0017435.1 MGP_CASTEiJ_G0014926.1 mouse_genomes_project 5 110985422 110993529 - Gm15787 processed_transcript antisense MGP_CASTEiJ_T0017436.1 MGP_CASTEiJ_G0014926.1 mouse_genomes_project 5 110985945 110993465 - Gm15787 processed_transcript antisense MGP_CASTEiJ_T0014421.1 MGP_CASTEiJ_G0012584.1 mouse_genomes_project 5 27078663 27079883 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0073870.1 MGP_CASTEiJ_G0029068.1 mouse_genomes_project 5 116519645 116526044 - MGP_CASTEiJ_P0073870 Dynll1 protein_coding protein_coding MGP_CASTEiJ_T0073871.1 MGP_CASTEiJ_G0029068.1 mouse_genomes_project 5 116520956 116525707 - Dynll1 protein_coding retained_intron MGP_CASTEiJ_T0073872.1 MGP_CASTEiJ_G0029068.1 mouse_genomes_project 5 116524605 116525924 - Dynll1 protein_coding processed_transcript MGP_CASTEiJ_T0073873.1 MGP_CASTEiJ_G0029068.1 mouse_genomes_project 5 116525316 116525979 - Dynll1 protein_coding retained_intron MGP_CASTEiJ_T0014445.1 MGP_CASTEiJ_G0012608.1 mouse_genomes_project 5 36253583 36253982 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070714.1 MGP_CASTEiJ_G0028470.1 mouse_genomes_project 5 22462405 22644217 - MGP_CASTEiJ_P0070714 Kmt2c protein_coding unknown_likely_coding MGP_CASTEiJ_T0070715.1 MGP_CASTEiJ_G0028470.1 mouse_genomes_project 5 22462414 22490629 - MGP_CASTEiJ_P0070715 Kmt2c protein_coding protein_coding MGP_CASTEiJ_T0070716.1 MGP_CASTEiJ_G0028470.1 mouse_genomes_project 5 22463039 22499949 - MGP_CASTEiJ_P0070716 Kmt2c protein_coding protein_coding MGP_CASTEiJ_T0070717.1 MGP_CASTEiJ_G0028470.1 mouse_genomes_project 5 22464223 22704005 - MGP_CASTEiJ_P0070717 Kmt2c protein_coding protein_coding MGP_CASTEiJ_T0070718.1 MGP_CASTEiJ_G0028470.1 mouse_genomes_project 5 22466262 22471917 - Kmt2c protein_coding retained_intron MGP_CASTEiJ_T0070719.1 MGP_CASTEiJ_G0028470.1 mouse_genomes_project 5 22479624 22483931 - Kmt2c protein_coding retained_intron MGP_CASTEiJ_T0070720.1 MGP_CASTEiJ_G0028470.1 mouse_genomes_project 5 22507301 22703962 - MGP_CASTEiJ_P0070720 Kmt2c protein_coding protein_coding MGP_CASTEiJ_T0070721.1 MGP_CASTEiJ_G0028470.1 mouse_genomes_project 5 22567510 22704015 - MGP_CASTEiJ_P0070721 Kmt2c protein_coding protein_coding MGP_CASTEiJ_T0070722.1 MGP_CASTEiJ_G0028470.1 mouse_genomes_project 5 22578339 22704043 - Kmt2c protein_coding retained_intron MGP_CASTEiJ_T0072679.1 MGP_CASTEiJ_G0028816.1 mouse_genomes_project 5 88562553 88579155 + MGP_CASTEiJ_P0072679 Enam protein_coding protein_coding MGP_CASTEiJ_T0072680.1 MGP_CASTEiJ_G0028816.1 mouse_genomes_project 5 88562560 88580467 + MGP_CASTEiJ_P0072680 Enam protein_coding protein_coding MGP_CASTEiJ_T0076071.1 MGP_CASTEiJ_G0029476.1 mouse_genomes_project 5 150868591 150931791 - MGP_CASTEiJ_P0076071 Usp12 protein_coding protein_coding MGP_CASTEiJ_T0076072.1 MGP_CASTEiJ_G0029476.1 mouse_genomes_project 5 150868621 150889518 - Usp12 protein_coding processed_transcript MGP_CASTEiJ_T0076073.1 MGP_CASTEiJ_G0029476.1 mouse_genomes_project 5 150877928 150889526 - Usp12 protein_coding processed_transcript MGP_CASTEiJ_T0014362.1 MGP_CASTEiJ_G0012525.1 mouse_genomes_project 5 9683777 9685346 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001402.1 MGP_CASTEiJ_G0001331.1 mouse_genomes_project 5 11455162 11458035 + TEC TEC MGP_CASTEiJ_T0004715.1 MGP_CASTEiJ_G0004068.1 mouse_genomes_project 5 137257600 137259698 + Gm42882 antisense antisense MGP_CASTEiJ_T0075204.1 MGP_CASTEiJ_G0029300.1 mouse_genomes_project 5 138914034 138954101 + MGP_CASTEiJ_P0075204 Dtx2 protein_coding protein_coding MGP_CASTEiJ_T0075205.1 MGP_CASTEiJ_G0029300.1 mouse_genomes_project 5 138914045 138954093 + MGP_CASTEiJ_P0075205 Dtx2 protein_coding protein_coding MGP_CASTEiJ_T0075206.1 MGP_CASTEiJ_G0029300.1 mouse_genomes_project 5 138914078 138954100 + MGP_CASTEiJ_P0075206 Dtx2 protein_coding protein_coding MGP_CASTEiJ_T0075207.1 MGP_CASTEiJ_G0029300.1 mouse_genomes_project 5 138914081 138931489 + MGP_CASTEiJ_P0075207 Dtx2 protein_coding protein_coding MGP_CASTEiJ_T0075208.1 MGP_CASTEiJ_G0029300.1 mouse_genomes_project 5 138914092 138954095 + MGP_CASTEiJ_P0075208 Dtx2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075209.1 MGP_CASTEiJ_G0029300.1 mouse_genomes_project 5 138914111 138954093 + MGP_CASTEiJ_P0075209 Dtx2 protein_coding protein_coding MGP_CASTEiJ_T0075210.1 MGP_CASTEiJ_G0029300.1 mouse_genomes_project 5 138914116 138929406 + MGP_CASTEiJ_P0075210 Dtx2 protein_coding protein_coding MGP_CASTEiJ_T0075211.1 MGP_CASTEiJ_G0029300.1 mouse_genomes_project 5 138914336 138915635 + Dtx2 protein_coding processed_transcript MGP_CASTEiJ_T0075212.1 MGP_CASTEiJ_G0029300.1 mouse_genomes_project 5 138939027 138954093 + Dtx2 protein_coding retained_intron MGP_CASTEiJ_T0073954.1 MGP_CASTEiJ_G0029082.1 mouse_genomes_project 5 117337252 117349814 - MGP_CASTEiJ_P0073954 Prkab1 protein_coding protein_coding MGP_CASTEiJ_T0073955.1 MGP_CASTEiJ_G0029082.1 mouse_genomes_project 5 117337256 117349860 - MGP_CASTEiJ_P0073955 Prkab1 protein_coding protein_coding MGP_CASTEiJ_T0073956.1 MGP_CASTEiJ_G0029082.1 mouse_genomes_project 5 117337838 117338832 - Prkab1 protein_coding retained_intron MGP_CASTEiJ_T0073957.1 MGP_CASTEiJ_G0029082.1 mouse_genomes_project 5 117337987 117341938 - Prkab1 protein_coding retained_intron MGP_CASTEiJ_T0073958.1 MGP_CASTEiJ_G0029082.1 mouse_genomes_project 5 117338106 117349708 - MGP_CASTEiJ_P0073958 Prkab1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073959.1 MGP_CASTEiJ_G0029082.1 mouse_genomes_project 5 117338321 117349803 - MGP_CASTEiJ_P0073959 Prkab1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073960.1 MGP_CASTEiJ_G0029082.1 mouse_genomes_project 5 117341527 117349749 - Prkab1 protein_coding retained_intron MGP_CASTEiJ_T0073961.1 MGP_CASTEiJ_G0029082.1 mouse_genomes_project 5 117343433 117347014 - Prkab1 protein_coding retained_intron MGP_CASTEiJ_T0073962.1 MGP_CASTEiJ_G0029082.1 mouse_genomes_project 5 117349249 117349811 - Prkab1 protein_coding retained_intron MGP_CASTEiJ_T0004681.1 MGP_CASTEiJ_G0004043.1 mouse_genomes_project 5 123275008 123276581 + Gm42918 antisense antisense MGP_CASTEiJ_T0070657.1 MGP_CASTEiJ_G0028456.1 mouse_genomes_project 5 21631732 21659573 - MGP_CASTEiJ_P0070657 Gbx1 protein_coding protein_coding MGP_CASTEiJ_T0076239.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 154589846 154833589 + MGP_CASTEiJ_P0076239 Fry protein_coding protein_coding MGP_CASTEiJ_T0076240.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 154589868 154846415 + Fry protein_coding retained_intron MGP_CASTEiJ_T0076241.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 154589868 154841514 + MGP_CASTEiJ_P0076241 Fry protein_coding protein_coding MGP_CASTEiJ_T0076242.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 154673751 154833564 + MGP_CASTEiJ_P0076242 Fry protein_coding protein_coding MGP_CASTEiJ_T0076243.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 154742213 154744530 + Fry protein_coding retained_intron MGP_CASTEiJ_T0076244.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 154744391 155003629 + MGP_CASTEiJ_P0076244 Fry protein_coding protein_coding MGP_CASTEiJ_T0076245.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 154786112 154892018 + Fry protein_coding retained_intron MGP_CASTEiJ_T0076246.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 154901758 154904413 + Fry protein_coding retained_intron MGP_CASTEiJ_T0076247.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 154911720 154915014 + Fry protein_coding retained_intron MGP_CASTEiJ_T0076248.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 154934072 154936204 + Fry protein_coding retained_intron MGP_CASTEiJ_T0076249.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 154941022 155003629 + MGP_CASTEiJ_P0076249 Fry protein_coding protein_coding MGP_CASTEiJ_T0076250.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 154953484 155003629 + MGP_CASTEiJ_P0076250 Fry protein_coding protein_coding MGP_CASTEiJ_T0076251.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 154960193 155002688 + Fry protein_coding retained_intron MGP_CASTEiJ_T0076252.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 154963127 154966793 + Fry protein_coding retained_intron MGP_CASTEiJ_T0076253.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 154993094 154995704 + Fry protein_coding retained_intron MGP_CASTEiJ_T0076254.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 154996014 154997934 + Fry protein_coding retained_intron MGP_CASTEiJ_T0076255.1 MGP_CASTEiJ_G0029506.1 mouse_genomes_project 5 155001761 155003511 + Fry protein_coding retained_intron MGP_CASTEiJ_T0004519.1 MGP_CASTEiJ_G0003923.1 mouse_genomes_project 5 24696383 24697700 - Gm16058 antisense antisense MGP_CASTEiJ_T0075024.1 MGP_CASTEiJ_G0029263.1 mouse_genomes_project 5 137412023 137430722 - MGP_CASTEiJ_P0075024 Lat2 protein_coding protein_coding MGP_CASTEiJ_T0075025.1 MGP_CASTEiJ_G0029263.1 mouse_genomes_project 5 137412104 137430687 - MGP_CASTEiJ_P0075025 Lat2 protein_coding protein_coding MGP_CASTEiJ_T0075026.1 MGP_CASTEiJ_G0029263.1 mouse_genomes_project 5 137412239 137424108 - MGP_CASTEiJ_P0075026 Lat2 protein_coding protein_coding MGP_CASTEiJ_T0075027.1 MGP_CASTEiJ_G0029263.1 mouse_genomes_project 5 137412432 137421422 - MGP_CASTEiJ_P0075027 Lat2 protein_coding protein_coding MGP_CASTEiJ_T0075028.1 MGP_CASTEiJ_G0029263.1 mouse_genomes_project 5 137412570 137420867 - Lat2 protein_coding processed_transcript MGP_CASTEiJ_T0075029.1 MGP_CASTEiJ_G0029263.1 mouse_genomes_project 5 137412800 137430703 - MGP_CASTEiJ_P0075029 Lat2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075030.1 MGP_CASTEiJ_G0029263.1 mouse_genomes_project 5 137412813 137417567 - Lat2 protein_coding retained_intron MGP_CASTEiJ_T0075031.1 MGP_CASTEiJ_G0029263.1 mouse_genomes_project 5 137419836 137430682 - Lat2 protein_coding processed_transcript MGP_CASTEiJ_T0075032.1 MGP_CASTEiJ_G0029263.1 mouse_genomes_project 5 137420996 137430663 - MGP_CASTEiJ_P0075032 Lat2 protein_coding protein_coding MGP_CASTEiJ_T0075033.1 MGP_CASTEiJ_G0029263.1 mouse_genomes_project 5 137421101 137423240 - Lat2 protein_coding retained_intron MGP_CASTEiJ_T0008034.1 MGP_CASTEiJ_G0006563.1 mouse_genomes_project 5 103396990 103398663 + Gm42618 lincRNA lincRNA MGP_CASTEiJ_T0075540.1 MGP_CASTEiJ_G0029361.1 mouse_genomes_project 5 141263552 141270594 + MGP_CASTEiJ_P0075540 Cnpy4 protein_coding protein_coding MGP_CASTEiJ_T0075541.1 MGP_CASTEiJ_G0029361.1 mouse_genomes_project 5 141265970 141269271 + MGP_CASTEiJ_P0075541 Cnpy4 protein_coding protein_coding MGP_CASTEiJ_T0075542.1 MGP_CASTEiJ_G0029361.1 mouse_genomes_project 5 141266165 141268843 + Cnpy4 protein_coding retained_intron MGP_CASTEiJ_T0074636.1 MGP_CASTEiJ_G0029197.1 mouse_genomes_project 5 126601632 126624106 + MGP_CASTEiJ_P0074636 Kmt5a protein_coding protein_coding MGP_CASTEiJ_T0074637.1 MGP_CASTEiJ_G0029197.1 mouse_genomes_project 5 126601687 126602957 + Kmt5a protein_coding retained_intron MGP_CASTEiJ_T0074638.1 MGP_CASTEiJ_G0029197.1 mouse_genomes_project 5 126607063 126624060 + MGP_CASTEiJ_P0074638 Kmt5a protein_coding unknown_likely_coding MGP_CASTEiJ_T0074639.1 MGP_CASTEiJ_G0029197.1 mouse_genomes_project 5 126607255 126624091 + MGP_CASTEiJ_P0074639 Kmt5a protein_coding unknown_likely_coding MGP_CASTEiJ_T0074640.1 MGP_CASTEiJ_G0029197.1 mouse_genomes_project 5 126607478 126613012 + Kmt5a protein_coding retained_intron MGP_CASTEiJ_T0074641.1 MGP_CASTEiJ_G0029197.1 mouse_genomes_project 5 126608398 126619732 + Kmt5a protein_coding processed_transcript MGP_CASTEiJ_T0074642.1 MGP_CASTEiJ_G0029197.1 mouse_genomes_project 5 126608656 126623203 + Kmt5a protein_coding processed_transcript MGP_CASTEiJ_T0074643.1 MGP_CASTEiJ_G0029197.1 mouse_genomes_project 5 126608699 126612484 + Kmt5a protein_coding processed_transcript MGP_CASTEiJ_T0074644.1 MGP_CASTEiJ_G0029197.1 mouse_genomes_project 5 126608892 126623203 + MGP_CASTEiJ_P0074644 Kmt5a protein_coding protein_coding MGP_CASTEiJ_T0074645.1 MGP_CASTEiJ_G0029197.1 mouse_genomes_project 5 126611870 126622398 + Kmt5a protein_coding processed_transcript MGP_CASTEiJ_T0074646.1 MGP_CASTEiJ_G0029197.1 mouse_genomes_project 5 126612083 126622549 + Kmt5a protein_coding retained_intron MGP_CASTEiJ_T0007992.1 MGP_CASTEiJ_G0006529.1 mouse_genomes_project 5 88873744 88893902 + Gm42912 lincRNA lincRNA MGP_CASTEiJ_T0001829.1 MGP_CASTEiJ_G0001750.1 mouse_genomes_project 5 144846118 144848513 - TEC TEC MGP_CASTEiJ_T0004621.1 MGP_CASTEiJ_G0004001.1 mouse_genomes_project 5 100792085 100798478 - 4930458D05Rik antisense antisense MGP_CASTEiJ_T0007908.1 MGP_CASTEiJ_G0006461.1 mouse_genomes_project 5 37179160 37197913 + Gm42524 lincRNA lincRNA MGP_CASTEiJ_T0004611.1 MGP_CASTEiJ_G0003995.1 mouse_genomes_project 5 99493568 99494794 + 4930405H06Rik antisense antisense MGP_CASTEiJ_T0001431.1 MGP_CASTEiJ_G0001359.1 mouse_genomes_project 5 28127554 28129617 - TEC TEC MGP_CASTEiJ_T0073796.1 MGP_CASTEiJ_G0029051.1 mouse_genomes_project 5 115977303 115992833 - MGP_CASTEiJ_P0073796 Gm20499 protein_coding protein_coding MGP_CASTEiJ_T0004600.1 MGP_CASTEiJ_G0003988.1 mouse_genomes_project 5 88626584 88626904 + antisense antisense MGP_CASTEiJ_T0001659.1 MGP_CASTEiJ_G0001582.1 mouse_genomes_project 5 96610491 96613737 + TEC TEC MGP_CASTEiJ_T0074474.1 MGP_CASTEiJ_G0029173.1 mouse_genomes_project 5 125584041 125585995 - MGP_CASTEiJ_P0074474 Il31 protein_coding protein_coding MGP_CASTEiJ_T0074475.1 MGP_CASTEiJ_G0029173.1 mouse_genomes_project 5 125584042 125586489 - MGP_CASTEiJ_P0074475 Il31 protein_coding protein_coding MGP_CASTEiJ_T0074476.1 MGP_CASTEiJ_G0029173.1 mouse_genomes_project 5 125584287 125595710 - MGP_CASTEiJ_P0074476 Il31 protein_coding protein_coding MGP_CASTEiJ_T0074477.1 MGP_CASTEiJ_G0029173.1 mouse_genomes_project 5 125586057 125586418 - Il31 protein_coding processed_transcript MGP_CASTEiJ_T0074396.1 MGP_CASTEiJ_G0029161.1 mouse_genomes_project 5 124894618 124917130 + MGP_CASTEiJ_P0074396 Rnf34 protein_coding protein_coding MGP_CASTEiJ_T0074397.1 MGP_CASTEiJ_G0029161.1 mouse_genomes_project 5 124894727 124911018 + MGP_CASTEiJ_P0074397 Rnf34 protein_coding protein_coding MGP_CASTEiJ_T0070491.1 MGP_CASTEiJ_G0028429.1 mouse_genomes_project 5 18710596 18754616 - MGP_CASTEiJ_P0070491 Napepld protein_coding protein_coding MGP_CASTEiJ_T0070492.1 MGP_CASTEiJ_G0028429.1 mouse_genomes_project 5 18710598 18754618 - MGP_CASTEiJ_P0070492 Napepld protein_coding protein_coding MGP_CASTEiJ_T0001538.1 MGP_CASTEiJ_G0001463.1 mouse_genomes_project 5 50252437 50256624 + TEC TEC MGP_CASTEiJ_T0098386.1 MGP_CASTEiJ_G0035317.1 mouse_genomes_project 5 42783287 42783669 - pseudogene pseudogene MGP_CASTEiJ_T0010433.1 MGP_CASTEiJ_G0008621.1 mouse_genomes_project 5 141241720 141241802 - Mir106b miRNA miRNA MGP_CASTEiJ_T0101105.1 MGP_CASTEiJ_G0038018.1 mouse_genomes_project 5 19450640 19450754 - Gm25459 snoRNA snoRNA MGP_CASTEiJ_T0014518.1 MGP_CASTEiJ_G0012681.1 mouse_genomes_project 5 72484133 72485022 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004533.1 MGP_CASTEiJ_G0003934.1 mouse_genomes_project 5 31643892 31644893 + Gm42846 antisense antisense MGP_CASTEiJ_T0098962.1 MGP_CASTEiJ_G0035886.1 mouse_genomes_project 5 42468537 42475470 - Gm3364 sense_intronic sense_intronic MGP_CASTEiJ_T0001767.1 MGP_CASTEiJ_G0001689.1 mouse_genomes_project 5 129324733 129327596 + TEC TEC MGP_CASTEiJ_T0004722.1 MGP_CASTEiJ_G0004073.1 mouse_genomes_project 5 137864268 137865430 - Abhd11os antisense antisense MGP_CASTEiJ_T0004723.1 MGP_CASTEiJ_G0004073.1 mouse_genomes_project 5 137864276 137865331 - Abhd11os antisense antisense MGP_CASTEiJ_T0001396.1 MGP_CASTEiJ_G0001325.1 mouse_genomes_project 5 10601352 10605262 + TEC TEC MGP_CASTEiJ_T0004556.1 MGP_CASTEiJ_G0003952.1 mouse_genomes_project 5 42411251 42432608 + Gm43507 antisense antisense MGP_CASTEiJ_T0004557.1 MGP_CASTEiJ_G0003952.1 mouse_genomes_project 5 42422898 42434019 + Gm43507 antisense antisense MGP_CASTEiJ_T0001710.1 MGP_CASTEiJ_G0001633.1 mouse_genomes_project 5 115233076 115234959 + TEC TEC MGP_CASTEiJ_T0014467.1 MGP_CASTEiJ_G0012630.1 mouse_genomes_project 5 50622142 50623995 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008008.1 MGP_CASTEiJ_G0006545.1 mouse_genomes_project 5 97091169 97120084 + Gm33969 lincRNA lincRNA MGP_CASTEiJ_T0073037.1 MGP_CASTEiJ_G0028898.1 mouse_genomes_project 5 100486262 100509323 - MGP_CASTEiJ_P0073037 Plac8 protein_coding protein_coding MGP_CASTEiJ_T0073038.1 MGP_CASTEiJ_G0028898.1 mouse_genomes_project 5 100486263 100496528 - MGP_CASTEiJ_P0073038 Plac8 protein_coding protein_coding MGP_CASTEiJ_T0073039.1 MGP_CASTEiJ_G0028898.1 mouse_genomes_project 5 100486264 100497093 - MGP_CASTEiJ_P0073039 Plac8 protein_coding protein_coding MGP_CASTEiJ_T0073040.1 MGP_CASTEiJ_G0028898.1 mouse_genomes_project 5 100496107 100509270 - Plac8 protein_coding retained_intron MGP_CASTEiJ_T0070214.1 MGP_CASTEiJ_G0028384.1 mouse_genomes_project 5 1765461 2268191 - MGP_CASTEiJ_P0070214 Cdk14 protein_coding protein_coding MGP_CASTEiJ_T0070215.1 MGP_CASTEiJ_G0028384.1 mouse_genomes_project 5 1765461 2390027 - MGP_CASTEiJ_P0070215 Cdk14 protein_coding protein_coding MGP_CASTEiJ_T0070216.1 MGP_CASTEiJ_G0028384.1 mouse_genomes_project 5 1767903 2267433 - MGP_CASTEiJ_P0070216 Cdk14 protein_coding protein_coding MGP_CASTEiJ_T0070217.1 MGP_CASTEiJ_G0028384.1 mouse_genomes_project 5 1768758 2268288 - MGP_CASTEiJ_P0070217 Cdk14 protein_coding protein_coding MGP_CASTEiJ_T0070218.1 MGP_CASTEiJ_G0028384.1 mouse_genomes_project 5 1850380 1853809 - Cdk14 protein_coding retained_intron MGP_CASTEiJ_T0070219.1 MGP_CASTEiJ_G0028384.1 mouse_genomes_project 5 1886651 2268105 - Cdk14 protein_coding retained_intron MGP_CASTEiJ_T0070220.1 MGP_CASTEiJ_G0028384.1 mouse_genomes_project 5 1901346 2006522 - Cdk14 protein_coding processed_transcript MGP_CASTEiJ_T0070221.1 MGP_CASTEiJ_G0028384.1 mouse_genomes_project 5 1978339 2390054 - Cdk14 protein_coding retained_intron MGP_CASTEiJ_T0070222.1 MGP_CASTEiJ_G0028384.1 mouse_genomes_project 5 2072041 2390081 - Cdk14 protein_coding retained_intron MGP_CASTEiJ_T0070223.1 MGP_CASTEiJ_G0028384.1 mouse_genomes_project 5 2116704 2390023 - Cdk14 protein_coding retained_intron MGP_CASTEiJ_T0070224.1 MGP_CASTEiJ_G0028384.1 mouse_genomes_project 5 2168820 2180971 - Cdk14 protein_coding processed_transcript MGP_CASTEiJ_T0070225.1 MGP_CASTEiJ_G0028384.1 mouse_genomes_project 5 2227681 2268415 - MGP_CASTEiJ_P0070225 Cdk14 protein_coding protein_coding MGP_CASTEiJ_T0070226.1 MGP_CASTEiJ_G0028384.1 mouse_genomes_project 5 2227682 2425232 - MGP_CASTEiJ_P0070226 Cdk14 protein_coding protein_coding MGP_CASTEiJ_T0070227.1 MGP_CASTEiJ_G0028384.1 mouse_genomes_project 5 2251433 2268426 - Cdk14 protein_coding processed_transcript MGP_CASTEiJ_T0074022.1 MGP_CASTEiJ_G0029095.1 mouse_genomes_project 5 119468665 119502275 + MGP_CASTEiJ_P0074022 Fbxo21 protein_coding protein_coding MGP_CASTEiJ_T0074023.1 MGP_CASTEiJ_G0029095.1 mouse_genomes_project 5 119468709 119479535 + Fbxo21 protein_coding retained_intron MGP_CASTEiJ_T0074024.1 MGP_CASTEiJ_G0029095.1 mouse_genomes_project 5 119468719 119502274 + MGP_CASTEiJ_P0074024 Fbxo21 protein_coding protein_coding MGP_CASTEiJ_T0074025.1 MGP_CASTEiJ_G0029095.1 mouse_genomes_project 5 119468763 119502276 + MGP_CASTEiJ_P0074025 Fbxo21 protein_coding protein_coding MGP_CASTEiJ_T0074026.1 MGP_CASTEiJ_G0029095.1 mouse_genomes_project 5 119469250 119478184 + Fbxo21 protein_coding processed_transcript MGP_CASTEiJ_T0074027.1 MGP_CASTEiJ_G0029095.1 mouse_genomes_project 5 119471303 119478070 + Fbxo21 protein_coding processed_transcript MGP_CASTEiJ_T0074073.1 MGP_CASTEiJ_G0029106.1 mouse_genomes_project 5 122182992 122201626 - MGP_CASTEiJ_P0074073 Sdsl protein_coding protein_coding MGP_CASTEiJ_T0074074.1 MGP_CASTEiJ_G0029106.1 mouse_genomes_project 5 122183008 122201673 - MGP_CASTEiJ_P0074074 Sdsl protein_coding protein_coding MGP_CASTEiJ_T0074075.1 MGP_CASTEiJ_G0029106.1 mouse_genomes_project 5 122185491 122193627 - MGP_CASTEiJ_P0074075 Sdsl protein_coding protein_coding MGP_CASTEiJ_T0007858.1 MGP_CASTEiJ_G0006431.1 mouse_genomes_project 5 20454560 20492138 - lincRNA lincRNA MGP_CASTEiJ_T0007859.1 MGP_CASTEiJ_G0006431.1 mouse_genomes_project 5 20489367 20492721 - lincRNA lincRNA MGP_CASTEiJ_T0007860.1 MGP_CASTEiJ_G0006431.1 mouse_genomes_project 5 20489844 20493071 - lincRNA lincRNA MGP_CASTEiJ_T0075496.1 MGP_CASTEiJ_G0029354.1 mouse_genomes_project 5 141154730 141177453 + MGP_CASTEiJ_P0075496 Zkscan1 protein_coding protein_coding MGP_CASTEiJ_T0075497.1 MGP_CASTEiJ_G0029354.1 mouse_genomes_project 5 141154730 141177453 + MGP_CASTEiJ_P0075497 Zkscan1 protein_coding protein_coding MGP_CASTEiJ_T0075498.1 MGP_CASTEiJ_G0029354.1 mouse_genomes_project 5 141154766 141174149 + MGP_CASTEiJ_P0075498 Zkscan1 protein_coding protein_coding MGP_CASTEiJ_T0075499.1 MGP_CASTEiJ_G0029354.1 mouse_genomes_project 5 141162289 141174148 + MGP_CASTEiJ_P0075499 Zkscan1 protein_coding protein_coding MGP_CASTEiJ_T0072883.1 MGP_CASTEiJ_G0028865.1 mouse_genomes_project 5 92876691 93177640 + MGP_CASTEiJ_P0072883 Shroom3 protein_coding protein_coding MGP_CASTEiJ_T0072884.1 MGP_CASTEiJ_G0028865.1 mouse_genomes_project 5 92876733 93178415 + MGP_CASTEiJ_P0072884 Shroom3 protein_coding protein_coding MGP_CASTEiJ_T0072885.1 MGP_CASTEiJ_G0028865.1 mouse_genomes_project 5 93009703 93015027 + Shroom3 protein_coding processed_transcript MGP_CASTEiJ_T0072886.1 MGP_CASTEiJ_G0028865.1 mouse_genomes_project 5 93015008 93044824 + Shroom3 protein_coding processed_transcript MGP_CASTEiJ_T0072887.1 MGP_CASTEiJ_G0028865.1 mouse_genomes_project 5 93136935 93152236 + MGP_CASTEiJ_P0072887 Shroom3 protein_coding protein_coding MGP_CASTEiJ_T0072888.1 MGP_CASTEiJ_G0028865.1 mouse_genomes_project 5 93150420 93154028 + Shroom3 protein_coding retained_intron MGP_CASTEiJ_T0072889.1 MGP_CASTEiJ_G0028865.1 mouse_genomes_project 5 93160770 93161680 + Shroom3 protein_coding retained_intron MGP_CASTEiJ_T0072890.1 MGP_CASTEiJ_G0028865.1 mouse_genomes_project 5 93174952 93177668 + Shroom3 protein_coding retained_intron MGP_CASTEiJ_T0001415.1 MGP_CASTEiJ_G0001344.1 mouse_genomes_project 5 19041069 19042935 - TEC TEC MGP_CASTEiJ_T0072067.1 MGP_CASTEiJ_G0028692.1 mouse_genomes_project 5 64546898 64584715 + MGP_CASTEiJ_P0072067 Rhoh protein_coding protein_coding MGP_CASTEiJ_T0072068.1 MGP_CASTEiJ_G0028692.1 mouse_genomes_project 5 64549624 64581446 + MGP_CASTEiJ_P0072068 Rhoh protein_coding protein_coding MGP_CASTEiJ_T0072069.1 MGP_CASTEiJ_G0028692.1 mouse_genomes_project 5 64550197 64554552 + Rhoh protein_coding processed_transcript MGP_CASTEiJ_T0072070.1 MGP_CASTEiJ_G0028692.1 mouse_genomes_project 5 64550235 64555040 + Rhoh protein_coding retained_intron MGP_CASTEiJ_T0098614.1 MGP_CASTEiJ_G0035545.1 mouse_genomes_project 5 75201690 75201813 - Gm24738 rRNA rRNA MGP_CASTEiJ_T0099895.1 MGP_CASTEiJ_G0036808.1 mouse_genomes_project 5 83365785 83365907 - Gm25806 snRNA snRNA MGP_CASTEiJ_T0072950.1 MGP_CASTEiJ_G0028879.1 mouse_genomes_project 5 97155981 97166329 - MGP_CASTEiJ_P0072950 Naa11 protein_coding protein_coding MGP_CASTEiJ_T0076299.1 MGP_CASTEiJ_G0029514.1 mouse_genomes_project 5 155640747 156028167 - MGP_CASTEiJ_P0076299 Gm42906 protein_coding protein_coding MGP_CASTEiJ_T0073348.1 MGP_CASTEiJ_G0028971.1 mouse_genomes_project 5 109249174 109271332 - MGP_CASTEiJ_P0073348 Gak protein_coding protein_coding MGP_CASTEiJ_T0073349.1 MGP_CASTEiJ_G0028971.1 mouse_genomes_project 5 109249177 109311740 - MGP_CASTEiJ_P0073349 Gak protein_coding protein_coding MGP_CASTEiJ_T0073350.1 MGP_CASTEiJ_G0028971.1 mouse_genomes_project 5 109249177 109311740 - MGP_CASTEiJ_P0073350 Gak protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073351.1 MGP_CASTEiJ_G0028971.1 mouse_genomes_project 5 109249183 109311740 - MGP_CASTEiJ_P0073351 Gak protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073352.1 MGP_CASTEiJ_G0028971.1 mouse_genomes_project 5 109249936 109251640 - Gak protein_coding retained_intron MGP_CASTEiJ_T0073353.1 MGP_CASTEiJ_G0028971.1 mouse_genomes_project 5 109251199 109311756 - MGP_CASTEiJ_P0073353 Gak protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073354.1 MGP_CASTEiJ_G0028971.1 mouse_genomes_project 5 109251745 109257014 - Gak protein_coding processed_transcript MGP_CASTEiJ_T0073355.1 MGP_CASTEiJ_G0028971.1 mouse_genomes_project 5 109256670 109260743 - Gak protein_coding retained_intron MGP_CASTEiJ_T0073356.1 MGP_CASTEiJ_G0028971.1 mouse_genomes_project 5 109259863 109307074 - Gak protein_coding retained_intron MGP_CASTEiJ_T0073357.1 MGP_CASTEiJ_G0028971.1 mouse_genomes_project 5 109262879 109271368 - MGP_CASTEiJ_P0073357 Gak protein_coding protein_coding MGP_CASTEiJ_T0073358.1 MGP_CASTEiJ_G0028971.1 mouse_genomes_project 5 109264155 109277832 - MGP_CASTEiJ_P0073358 Gak protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073359.1 MGP_CASTEiJ_G0028971.1 mouse_genomes_project 5 109294893 109311424 - Gak protein_coding processed_transcript MGP_CASTEiJ_T0073360.1 MGP_CASTEiJ_G0028971.1 mouse_genomes_project 5 109305294 109311694 - MGP_CASTEiJ_P0073360 Gak protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0004564.1 MGP_CASTEiJ_G0003957.1 mouse_genomes_project 5 50576288 50577544 + Gm43685 antisense antisense MGP_CASTEiJ_T0075922.1 MGP_CASTEiJ_G0029443.1 mouse_genomes_project 5 147627129 147636250 + MGP_CASTEiJ_P0075922 Gm42421 protein_coding protein_coding MGP_CASTEiJ_T0001711.1 MGP_CASTEiJ_G0001634.1 mouse_genomes_project 5 116163482 116166247 + TEC TEC MGP_CASTEiJ_T0014367.1 MGP_CASTEiJ_G0012530.1 mouse_genomes_project 5 13166545 13167329 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001802.1 MGP_CASTEiJ_G0001724.1 mouse_genomes_project 5 135110923 135113798 - TEC TEC MGP_CASTEiJ_T0071085.1 MGP_CASTEiJ_G0028532.1 mouse_genomes_project 5 28583891 28622561 + MGP_CASTEiJ_P0071085 Gckr protein_coding protein_coding MGP_CASTEiJ_T0071086.1 MGP_CASTEiJ_G0028532.1 mouse_genomes_project 5 28584002 28622542 + Gckr protein_coding retained_intron MGP_CASTEiJ_T0071087.1 MGP_CASTEiJ_G0028532.1 mouse_genomes_project 5 28584029 28622549 + MGP_CASTEiJ_P0071087 Gckr protein_coding protein_coding MGP_CASTEiJ_T0071088.1 MGP_CASTEiJ_G0028532.1 mouse_genomes_project 5 28584060 28587168 + MGP_CASTEiJ_P0071088 Gckr protein_coding protein_coding MGP_CASTEiJ_T0071089.1 MGP_CASTEiJ_G0028532.1 mouse_genomes_project 5 28585151 28593038 + Gckr protein_coding retained_intron MGP_CASTEiJ_T0071090.1 MGP_CASTEiJ_G0028532.1 mouse_genomes_project 5 28585955 28591944 + Gckr protein_coding retained_intron MGP_CASTEiJ_T0071091.1 MGP_CASTEiJ_G0028532.1 mouse_genomes_project 5 28621477 28622544 + Gckr protein_coding retained_intron MGP_CASTEiJ_T0001813.1 MGP_CASTEiJ_G0001734.1 mouse_genomes_project 5 137282246 137287530 - TEC TEC MGP_CASTEiJ_T0075188.1 MGP_CASTEiJ_G0029296.1 mouse_genomes_project 5 138801602 138803261 + MGP_CASTEiJ_P0075188 Hspb1 protein_coding protein_coding MGP_CASTEiJ_T0075189.1 MGP_CASTEiJ_G0029296.1 mouse_genomes_project 5 138801701 138803259 + MGP_CASTEiJ_P0075189 Hspb1 protein_coding protein_coding MGP_CASTEiJ_T0101621.1 MGP_CASTEiJ_G0038478.1 mouse_genomes_project 5 73398292 73398750 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0075532.1 MGP_CASTEiJ_G0029360.1 mouse_genomes_project 5 141254697 141263294 - MGP_CASTEiJ_P0075532 Taf6 protein_coding protein_coding MGP_CASTEiJ_T0075533.1 MGP_CASTEiJ_G0029360.1 mouse_genomes_project 5 141254697 141263519 - MGP_CASTEiJ_P0075533 Taf6 protein_coding protein_coding MGP_CASTEiJ_T0075534.1 MGP_CASTEiJ_G0029360.1 mouse_genomes_project 5 141254700 141263273 - MGP_CASTEiJ_P0075534 Taf6 protein_coding protein_coding MGP_CASTEiJ_T0075535.1 MGP_CASTEiJ_G0029360.1 mouse_genomes_project 5 141254708 141263289 - MGP_CASTEiJ_P0075535 Taf6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075536.1 MGP_CASTEiJ_G0029360.1 mouse_genomes_project 5 141256257 141257526 - Taf6 protein_coding retained_intron MGP_CASTEiJ_T0075537.1 MGP_CASTEiJ_G0029360.1 mouse_genomes_project 5 141258731 141263294 - MGP_CASTEiJ_P0075537 Taf6 protein_coding protein_coding MGP_CASTEiJ_T0075538.1 MGP_CASTEiJ_G0029360.1 mouse_genomes_project 5 141259986 141263283 - MGP_CASTEiJ_P0075538 Taf6 protein_coding protein_coding MGP_CASTEiJ_T0075539.1 MGP_CASTEiJ_G0029360.1 mouse_genomes_project 5 141262141 141263284 - Taf6 protein_coding processed_transcript MGP_CASTEiJ_T0072220.1 MGP_CASTEiJ_G0028715.1 mouse_genomes_project 5 70347702 70456454 - protein_coding processed_transcript MGP_CASTEiJ_T0072221.1 MGP_CASTEiJ_G0028715.1 mouse_genomes_project 5 70347857 70348089 - protein_coding transcribed_processed_pseudogene MGP_CASTEiJ_T0004625.1 MGP_CASTEiJ_G0004003.1 mouse_genomes_project 5 102504806 102514568 - 1700013M08Rik antisense antisense MGP_CASTEiJ_T0004626.1 MGP_CASTEiJ_G0004003.1 mouse_genomes_project 5 102509659 102510445 - 1700013M08Rik antisense antisense MGP_CASTEiJ_T0101136.1 MGP_CASTEiJ_G0038049.1 mouse_genomes_project 5 100782061 100782195 + Gm26286 snoRNA snoRNA MGP_CASTEiJ_T0004674.1 MGP_CASTEiJ_G0004037.1 mouse_genomes_project 5 121799210 121817217 - Gm10390 antisense antisense MGP_CASTEiJ_T0004675.1 MGP_CASTEiJ_G0004037.1 mouse_genomes_project 5 121809329 121817219 - Gm10390 antisense antisense MGP_CASTEiJ_T0072701.1 MGP_CASTEiJ_G0028822.1 mouse_genomes_project 5 88842355 88861912 + MGP_CASTEiJ_P0072701 Dck protein_coding protein_coding MGP_CASTEiJ_T0072702.1 MGP_CASTEiJ_G0028822.1 mouse_genomes_project 5 88847186 88848004 + Dck protein_coding retained_intron MGP_CASTEiJ_T0001715.1 MGP_CASTEiJ_G0001638.1 mouse_genomes_project 5 117181795 117184032 + TEC TEC MGP_CASTEiJ_T0001543.1 MGP_CASTEiJ_G0001468.1 mouse_genomes_project 5 53689677 53693284 + TEC TEC MGP_CASTEiJ_T0004569.1 MGP_CASTEiJ_G0003962.1 mouse_genomes_project 5 64251168 64255577 - Gm42726 antisense antisense MGP_CASTEiJ_T0008104.1 MGP_CASTEiJ_G0006606.1 mouse_genomes_project 5 116526164 116545768 + Gm13830 lincRNA lincRNA MGP_CASTEiJ_T0008105.1 MGP_CASTEiJ_G0006606.1 mouse_genomes_project 5 116526180 116527371 + Gm13830 lincRNA lincRNA MGP_CASTEiJ_T0008106.1 MGP_CASTEiJ_G0006606.1 mouse_genomes_project 5 116526181 116544141 + Gm13830 lincRNA lincRNA MGP_CASTEiJ_T0008107.1 MGP_CASTEiJ_G0006606.1 mouse_genomes_project 5 116526191 116527404 + Gm13830 lincRNA lincRNA MGP_CASTEiJ_T0008108.1 MGP_CASTEiJ_G0006606.1 mouse_genomes_project 5 116526251 116526781 + Gm13830 lincRNA lincRNA MGP_CASTEiJ_T0007931.1 MGP_CASTEiJ_G0006481.1 mouse_genomes_project 5 51361361 51363037 + lincRNA lincRNA MGP_CASTEiJ_T0099862.1 MGP_CASTEiJ_G0036775.1 mouse_genomes_project 5 17248197 17248297 + Gm22755 snRNA snRNA MGP_CASTEiJ_T0014556.1 MGP_CASTEiJ_G0012719.1 mouse_genomes_project 5 90865926 90866240 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008045.1 MGP_CASTEiJ_G0006569.1 mouse_genomes_project 5 106595439 106603762 + Gm32736 lincRNA lincRNA MGP_CASTEiJ_T0073167.1 MGP_CASTEiJ_G0028932.1 mouse_genomes_project 5 105717186 105773317 - MGP_CASTEiJ_P0073167 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0001720.1 MGP_CASTEiJ_G0001643.1 mouse_genomes_project 5 118230676 118231135 + TEC TEC MGP_CASTEiJ_T0071312.1 MGP_CASTEiJ_G0028567.1 mouse_genomes_project 5 31622221 31639559 - MGP_CASTEiJ_P0071312 Haus3 protein_coding protein_coding MGP_CASTEiJ_T0071313.1 MGP_CASTEiJ_G0028567.1 mouse_genomes_project 5 31631660 31639480 - Haus3 protein_coding retained_intron MGP_CASTEiJ_T0071314.1 MGP_CASTEiJ_G0028567.1 mouse_genomes_project 5 31637962 31639484 - Haus3 protein_coding processed_transcript MGP_CASTEiJ_T0071315.1 MGP_CASTEiJ_G0028567.1 mouse_genomes_project 5 31638054 31639535 - MGP_CASTEiJ_P0071315 Haus3 protein_coding protein_coding MGP_CASTEiJ_T0071316.1 MGP_CASTEiJ_G0028567.1 mouse_genomes_project 5 31638267 31639465 - MGP_CASTEiJ_P0071316 Haus3 protein_coding protein_coding MGP_CASTEiJ_T0074267.1 MGP_CASTEiJ_G0029143.1 mouse_genomes_project 5 124096254 124100575 + MGP_CASTEiJ_P0074267 Myl2 protein_coding protein_coding MGP_CASTEiJ_T0074268.1 MGP_CASTEiJ_G0029143.1 mouse_genomes_project 5 124096324 124102732 + MGP_CASTEiJ_P0074268 Myl2 protein_coding protein_coding MGP_CASTEiJ_T0074269.1 MGP_CASTEiJ_G0029143.1 mouse_genomes_project 5 124096329 124100318 + MGP_CASTEiJ_P0074269 Myl2 protein_coding protein_coding MGP_CASTEiJ_T0074270.1 MGP_CASTEiJ_G0029143.1 mouse_genomes_project 5 124096458 124098048 + Myl2 protein_coding processed_transcript MGP_CASTEiJ_T0074271.1 MGP_CASTEiJ_G0029143.1 mouse_genomes_project 5 124096877 124099204 + MGP_CASTEiJ_P0074271 Myl2 protein_coding protein_coding MGP_CASTEiJ_T0074272.1 MGP_CASTEiJ_G0029143.1 mouse_genomes_project 5 124097094 124099988 + MGP_CASTEiJ_P0074272 Myl2 protein_coding protein_coding MGP_CASTEiJ_T0074273.1 MGP_CASTEiJ_G0029143.1 mouse_genomes_project 5 124098474 124102724 + Myl2 protein_coding processed_transcript MGP_CASTEiJ_T0074274.1 MGP_CASTEiJ_G0029143.1 mouse_genomes_project 5 124098476 124102730 + Myl2 protein_coding processed_transcript MGP_CASTEiJ_T0074275.1 MGP_CASTEiJ_G0029143.1 mouse_genomes_project 5 124099188 124100285 + MGP_CASTEiJ_P0074275 Myl2 protein_coding protein_coding MGP_CASTEiJ_T0004542.1 MGP_CASTEiJ_G0003943.1 mouse_genomes_project 5 34660466 34663928 - Gm26647 antisense antisense MGP_CASTEiJ_T0071833.1 MGP_CASTEiJ_G0028649.1 mouse_genomes_project 5 47868299 47981924 - MGP_CASTEiJ_P0071833 Adgra3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071834.1 MGP_CASTEiJ_G0028649.1 mouse_genomes_project 5 47871914 47982077 - MGP_CASTEiJ_P0071834 Adgra3 protein_coding protein_coding MGP_CASTEiJ_T0071835.1 MGP_CASTEiJ_G0028649.1 mouse_genomes_project 5 47878077 47884043 - Adgra3 protein_coding processed_transcript MGP_CASTEiJ_T0071836.1 MGP_CASTEiJ_G0028649.1 mouse_genomes_project 5 47903212 47917661 - Adgra3 protein_coding processed_transcript MGP_CASTEiJ_T0071837.1 MGP_CASTEiJ_G0028649.1 mouse_genomes_project 5 47924452 47930888 - Adgra3 protein_coding retained_intron MGP_CASTEiJ_T0071838.1 MGP_CASTEiJ_G0028649.1 mouse_genomes_project 5 47973473 47976458 - Adgra3 protein_coding retained_intron MGP_CASTEiJ_T0071839.1 MGP_CASTEiJ_G0028649.1 mouse_genomes_project 5 47973948 47981716 - Adgra3 protein_coding processed_transcript MGP_CASTEiJ_T0071840.1 MGP_CASTEiJ_G0028649.1 mouse_genomes_project 5 47981197 47981716 - Adgra3 protein_coding retained_intron MGP_CASTEiJ_T0072660.1 MGP_CASTEiJ_G0028804.1 mouse_genomes_project 5 87889859 87897318 + MGP_CASTEiJ_P0072660 Csn3 protein_coding protein_coding MGP_CASTEiJ_T0072661.1 MGP_CASTEiJ_G0028804.1 mouse_genomes_project 5 87889887 87895688 + MGP_CASTEiJ_P0072661 Csn3 protein_coding protein_coding MGP_CASTEiJ_T0072662.1 MGP_CASTEiJ_G0028804.1 mouse_genomes_project 5 87889892 87894124 + Csn3 protein_coding retained_intron MGP_CASTEiJ_T0072663.1 MGP_CASTEiJ_G0028804.1 mouse_genomes_project 5 87889907 87894124 + Csn3 protein_coding retained_intron MGP_CASTEiJ_T0072664.1 MGP_CASTEiJ_G0028804.1 mouse_genomes_project 5 87889915 87896910 + MGP_CASTEiJ_P0072664 Csn3 protein_coding protein_coding MGP_CASTEiJ_T0072665.1 MGP_CASTEiJ_G0028804.1 mouse_genomes_project 5 87892690 87894811 + Csn3 protein_coding retained_intron MGP_CASTEiJ_T0070213.1 MGP_CASTEiJ_G0028383.1 mouse_genomes_project 5 1711404 1715607 - MGP_CASTEiJ_P0070213 Fzd1 protein_coding protein_coding MGP_CASTEiJ_T0008240.1 MGP_CASTEiJ_G0006700.1 mouse_genomes_project 5 153287827 153344379 - Gm15406 lincRNA lincRNA MGP_CASTEiJ_T0008242.1 MGP_CASTEiJ_G0006700.1 mouse_genomes_project 5 153293606 153344322 - Gm15406 lincRNA lincRNA MGP_CASTEiJ_T0017454.1 MGP_CASTEiJ_G0014932.1 mouse_genomes_project 5 142484121 142487230 - Gm15672 processed_transcript processed_transcript MGP_CASTEiJ_T0073752.1 MGP_CASTEiJ_G0029044.1 mouse_genomes_project 5 115731665 115776634 + MGP_CASTEiJ_P0073752 Fam222a protein_coding protein_coding MGP_CASTEiJ_T0073753.1 MGP_CASTEiJ_G0029044.1 mouse_genomes_project 5 115731666 115758069 + Fam222a protein_coding processed_transcript MGP_CASTEiJ_T0099929.1 MGP_CASTEiJ_G0036842.1 mouse_genomes_project 5 141542578 141542685 + Gm25525 snRNA snRNA MGP_CASTEiJ_T0075899.1 MGP_CASTEiJ_G0029439.1 mouse_genomes_project 5 147559588 147602414 + MGP_CASTEiJ_P0075899 Eif2ak1 protein_coding protein_coding MGP_CASTEiJ_T0075900.1 MGP_CASTEiJ_G0029439.1 mouse_genomes_project 5 147559631 147578374 + Eif2ak1 protein_coding retained_intron MGP_CASTEiJ_T0075901.1 MGP_CASTEiJ_G0029439.1 mouse_genomes_project 5 147559746 147568625 + Eif2ak1 protein_coding retained_intron MGP_CASTEiJ_T0014449.1 MGP_CASTEiJ_G0012612.1 mouse_genomes_project 5 39164959 39165428 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075045.1 MGP_CASTEiJ_G0029266.1 mouse_genomes_project 5 137525383 137572247 - MGP_CASTEiJ_P0075045 Eln protein_coding protein_coding MGP_CASTEiJ_T0075046.1 MGP_CASTEiJ_G0029266.1 mouse_genomes_project 5 137525627 137548091 - Eln protein_coding retained_intron MGP_CASTEiJ_T0075047.1 MGP_CASTEiJ_G0029266.1 mouse_genomes_project 5 137525627 137572170 - MGP_CASTEiJ_P0075047 Eln protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075048.1 MGP_CASTEiJ_G0029266.1 mouse_genomes_project 5 137528115 137552218 - MGP_CASTEiJ_P0075048 Eln protein_coding unknown_likely_coding MGP_CASTEiJ_T0075049.1 MGP_CASTEiJ_G0029266.1 mouse_genomes_project 5 137548404 137551917 - Eln protein_coding retained_intron MGP_CASTEiJ_T0075050.1 MGP_CASTEiJ_G0029266.1 mouse_genomes_project 5 137569650 137572177 - Eln protein_coding retained_intron MGP_CASTEiJ_T0101130.1 MGP_CASTEiJ_G0038043.1 mouse_genomes_project 5 92370331 92370475 + Gm25290 snoRNA snoRNA MGP_CASTEiJ_T0001609.1 MGP_CASTEiJ_G0001533.1 mouse_genomes_project 5 66737895 66739248 + TEC TEC MGP_CASTEiJ_T0008255.1 MGP_CASTEiJ_G0006711.1 mouse_genomes_project 5 153762505 153790964 + BC028471 lincRNA lincRNA MGP_CASTEiJ_T0008256.1 MGP_CASTEiJ_G0006711.1 mouse_genomes_project 5 153763877 153772902 + BC028471 lincRNA lincRNA MGP_CASTEiJ_T0008257.1 MGP_CASTEiJ_G0006711.1 mouse_genomes_project 5 153763879 153783634 + BC028471 lincRNA lincRNA MGP_CASTEiJ_T0008258.1 MGP_CASTEiJ_G0006711.1 mouse_genomes_project 5 153764094 153789854 + BC028471 lincRNA lincRNA MGP_CASTEiJ_T0008259.1 MGP_CASTEiJ_G0006711.1 mouse_genomes_project 5 153772867 153790964 + BC028471 lincRNA lincRNA MGP_CASTEiJ_T0008260.1 MGP_CASTEiJ_G0006711.1 mouse_genomes_project 5 153772879 153773699 + BC028471 lincRNA lincRNA MGP_CASTEiJ_T0073695.1 MGP_CASTEiJ_G0029034.1 mouse_genomes_project 5 115178750 115203174 + Usp30 protein_coding processed_transcript MGP_CASTEiJ_T0073696.1 MGP_CASTEiJ_G0029034.1 mouse_genomes_project 5 115178803 115220043 + MGP_CASTEiJ_P0073696 Usp30 protein_coding protein_coding MGP_CASTEiJ_T0073697.1 MGP_CASTEiJ_G0029034.1 mouse_genomes_project 5 115179039 115200693 + Usp30 protein_coding processed_transcript MGP_CASTEiJ_T0073698.1 MGP_CASTEiJ_G0029034.1 mouse_genomes_project 5 115214506 115244636 + MGP_CASTEiJ_P0073698 Usp30 protein_coding protein_coding MGP_CASTEiJ_T0073699.1 MGP_CASTEiJ_G0029034.1 mouse_genomes_project 5 115214551 115241020 + MGP_CASTEiJ_P0073699 Usp30 protein_coding protein_coding MGP_CASTEiJ_T0073700.1 MGP_CASTEiJ_G0029034.1 mouse_genomes_project 5 115217903 115229542 + Usp30 protein_coding retained_intron MGP_CASTEiJ_T0073701.1 MGP_CASTEiJ_G0029034.1 mouse_genomes_project 5 115228351 115228871 + Usp30 protein_coding retained_intron MGP_CASTEiJ_T0001798.1 MGP_CASTEiJ_G0001720.1 mouse_genomes_project 5 134687184 134694500 - TEC TEC MGP_CASTEiJ_T0099859.1 MGP_CASTEiJ_G0036772.1 mouse_genomes_project 5 6778584 6778686 - Gm23312 snRNA snRNA MGP_CASTEiJ_T0075065.1 MGP_CASTEiJ_G0029272.1 mouse_genomes_project 5 137861320 137864286 + MGP_CASTEiJ_P0075065 Abhd11 protein_coding protein_coding MGP_CASTEiJ_T0075066.1 MGP_CASTEiJ_G0029272.1 mouse_genomes_project 5 137861467 137864331 + MGP_CASTEiJ_P0075066 Abhd11 protein_coding protein_coding MGP_CASTEiJ_T0075067.1 MGP_CASTEiJ_G0029272.1 mouse_genomes_project 5 137861581 137862225 + MGP_CASTEiJ_P0075067 Abhd11 protein_coding protein_coding MGP_CASTEiJ_T0075068.1 MGP_CASTEiJ_G0029272.1 mouse_genomes_project 5 137861624 137864325 + MGP_CASTEiJ_P0075068 Abhd11 protein_coding protein_coding MGP_CASTEiJ_T0075069.1 MGP_CASTEiJ_G0029272.1 mouse_genomes_project 5 137861856 137864325 + MGP_CASTEiJ_P0075069 Abhd11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075070.1 MGP_CASTEiJ_G0029272.1 mouse_genomes_project 5 137861871 137864325 + MGP_CASTEiJ_P0075070 Abhd11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075071.1 MGP_CASTEiJ_G0029272.1 mouse_genomes_project 5 137862138 137864131 + MGP_CASTEiJ_P0075071 Abhd11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073480.1 MGP_CASTEiJ_G0028993.1 mouse_genomes_project 5 111389423 111471248 + MGP_CASTEiJ_P0073480 Galnt9 protein_coding protein_coding MGP_CASTEiJ_T0073481.1 MGP_CASTEiJ_G0028993.1 mouse_genomes_project 5 111449298 111471250 + MGP_CASTEiJ_P0073481 Galnt9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073482.1 MGP_CASTEiJ_G0028993.1 mouse_genomes_project 5 111449299 111471253 + MGP_CASTEiJ_P0073482 Galnt9 protein_coding protein_coding MGP_CASTEiJ_T0075756.1 MGP_CASTEiJ_G0029407.1 mouse_genomes_project 5 144178344 144194778 + MGP_CASTEiJ_P0075756 Brat1 protein_coding protein_coding MGP_CASTEiJ_T0075757.1 MGP_CASTEiJ_G0029407.1 mouse_genomes_project 5 144178361 144194567 + MGP_CASTEiJ_P0075757 Brat1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075758.1 MGP_CASTEiJ_G0029407.1 mouse_genomes_project 5 144178388 144191360 + Brat1 protein_coding retained_intron MGP_CASTEiJ_T0075759.1 MGP_CASTEiJ_G0029407.1 mouse_genomes_project 5 144178390 144190869 + Brat1 protein_coding retained_intron MGP_CASTEiJ_T0075760.1 MGP_CASTEiJ_G0029407.1 mouse_genomes_project 5 144178404 144194773 + MGP_CASTEiJ_P0075760 Brat1 protein_coding protein_coding MGP_CASTEiJ_T0008016.1 MGP_CASTEiJ_G0006550.1 mouse_genomes_project 5 99368653 99371303 + Gm43253 lincRNA lincRNA MGP_CASTEiJ_T0074304.1 MGP_CASTEiJ_G0029149.1 mouse_genomes_project 5 124334735 124368702 - MGP_CASTEiJ_P0074304 Rad9b protein_coding protein_coding MGP_CASTEiJ_T0074305.1 MGP_CASTEiJ_G0029149.1 mouse_genomes_project 5 124337005 124365763 - MGP_CASTEiJ_P0074305 Rad9b protein_coding protein_coding MGP_CASTEiJ_T0074306.1 MGP_CASTEiJ_G0029149.1 mouse_genomes_project 5 124337007 124368703 - MGP_CASTEiJ_P0074306 Rad9b protein_coding protein_coding MGP_CASTEiJ_T0074307.1 MGP_CASTEiJ_G0029149.1 mouse_genomes_project 5 124365740 124367255 - MGP_CASTEiJ_P0074307 Rad9b protein_coding protein_coding MGP_CASTEiJ_T0074308.1 MGP_CASTEiJ_G0029149.1 mouse_genomes_project 5 124366963 124368690 - Rad9b protein_coding retained_intron MGP_CASTEiJ_T0074984.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137151718 137257867 - MGP_CASTEiJ_P0074984 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0074985.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137151718 137258321 - MGP_CASTEiJ_P0074985 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0074986.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137151723 137258293 - MGP_CASTEiJ_P0074986 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0074987.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137151725 137157468 - MGP_CASTEiJ_P0074987 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0074988.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137151731 137258321 - MGP_CASTEiJ_P0074988 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0074989.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137151741 137258181 - MGP_CASTEiJ_P0074989 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0074990.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137151741 137258181 - MGP_CASTEiJ_P0074990 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0074991.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137151741 137258189 - MGP_CASTEiJ_P0074991 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0074992.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137151759 137258194 - MGP_CASTEiJ_P0074992 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0074993.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137151848 137171169 - MGP_CASTEiJ_P0074993 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0074994.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137152639 137258194 - MGP_CASTEiJ_P0074994 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0074995.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137152639 137258181 - MGP_CASTEiJ_P0074995 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0074996.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137152700 137258297 - MGP_CASTEiJ_P0074996 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0074997.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137152711 137258191 - MGP_CASTEiJ_P0074997 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0074998.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137154360 137155332 - Gtf2ird1 protein_coding retained_intron MGP_CASTEiJ_T0074999.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137154423 137179950 - MGP_CASTEiJ_P0074999 Gtf2ird1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075000.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137155910 137183376 - MGP_CASTEiJ_P0075000 Gtf2ird1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075001.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137157525 137183355 - MGP_CASTEiJ_P0075001 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0075002.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137169609 137257888 - Gtf2ird1 protein_coding retained_intron MGP_CASTEiJ_T0075003.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137176407 137193943 - MGP_CASTEiJ_P0075003 Gtf2ird1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075004.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137176407 137193943 - MGP_CASTEiJ_P0075004 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0075005.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137176616 137179433 - Gtf2ird1 protein_coding retained_intron MGP_CASTEiJ_T0075006.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137176619 137193943 - MGP_CASTEiJ_P0075006 Gtf2ird1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075007.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137178710 137193943 - MGP_CASTEiJ_P0075007 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0075008.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137179698 137193847 - Gtf2ird1 protein_coding retained_intron MGP_CASTEiJ_T0075009.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137179814 137200489 - Gtf2ird1 protein_coding retained_intron MGP_CASTEiJ_T0075010.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137186678 137213456 - MGP_CASTEiJ_P0075010 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0075011.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137201203 137258284 - Gtf2ird1 protein_coding retained_intron MGP_CASTEiJ_T0075012.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137203078 137258279 - Gtf2ird1 protein_coding processed_transcript MGP_CASTEiJ_T0075013.1 MGP_CASTEiJ_G0029259.1 mouse_genomes_project 5 137209375 137257551 - MGP_CASTEiJ_P0075013 Gtf2ird1 protein_coding protein_coding MGP_CASTEiJ_T0001838.1 MGP_CASTEiJ_G0001759.1 mouse_genomes_project 5 152839169 152839816 - TEC TEC MGP_CASTEiJ_T0001725.1 MGP_CASTEiJ_G0001648.1 mouse_genomes_project 5 120106789 120108137 - TEC TEC MGP_CASTEiJ_T0070461.1 MGP_CASTEiJ_G0028422.1 mouse_genomes_project 5 18204580 18272502 + Gsap protein_coding retained_intron MGP_CASTEiJ_T0070462.1 MGP_CASTEiJ_G0028422.1 mouse_genomes_project 5 18204592 18304147 + MGP_CASTEiJ_P0070462 Gsap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070463.1 MGP_CASTEiJ_G0028422.1 mouse_genomes_project 5 18204614 18304169 + MGP_CASTEiJ_P0070463 Gsap protein_coding protein_coding MGP_CASTEiJ_T0070464.1 MGP_CASTEiJ_G0028422.1 mouse_genomes_project 5 18204624 18210143 + Gsap protein_coding processed_transcript MGP_CASTEiJ_T0070465.1 MGP_CASTEiJ_G0028422.1 mouse_genomes_project 5 18204637 18264472 + MGP_CASTEiJ_P0070465 Gsap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070466.1 MGP_CASTEiJ_G0028422.1 mouse_genomes_project 5 18204638 18301100 + MGP_CASTEiJ_P0070466 Gsap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070467.1 MGP_CASTEiJ_G0028422.1 mouse_genomes_project 5 18204638 18301100 + MGP_CASTEiJ_P0070467 Gsap protein_coding protein_coding MGP_CASTEiJ_T0070468.1 MGP_CASTEiJ_G0028422.1 mouse_genomes_project 5 18263827 18271014 + Gsap protein_coding retained_intron MGP_CASTEiJ_T0070469.1 MGP_CASTEiJ_G0028422.1 mouse_genomes_project 5 18302246 18332051 + MGP_CASTEiJ_P0070469 Gsap protein_coding protein_coding MGP_CASTEiJ_T0070470.1 MGP_CASTEiJ_G0028422.1 mouse_genomes_project 5 18302326 18332052 + Gsap protein_coding processed_transcript MGP_CASTEiJ_T0008030.1 MGP_CASTEiJ_G0006560.1 mouse_genomes_project 5 101713610 101715871 + Gm43270 lincRNA lincRNA MGP_CASTEiJ_T0075735.1 MGP_CASTEiJ_G0029404.1 mouse_genomes_project 5 144068804 144078144 + MGP_CASTEiJ_P0075735 Lfng protein_coding protein_coding MGP_CASTEiJ_T0075736.1 MGP_CASTEiJ_G0029404.1 mouse_genomes_project 5 144074107 144075931 + Lfng protein_coding processed_transcript MGP_CASTEiJ_T0075737.1 MGP_CASTEiJ_G0029404.1 mouse_genomes_project 5 144074283 144077273 + Lfng protein_coding retained_intron MGP_CASTEiJ_T0008141.1 MGP_CASTEiJ_G0006633.1 mouse_genomes_project 5 121631195 121635304 + Gm43277 lincRNA lincRNA MGP_CASTEiJ_T0014355.1 MGP_CASTEiJ_G0012518.1 mouse_genomes_project 5 5958572 5958766 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074012.1 MGP_CASTEiJ_G0029093.1 mouse_genomes_project 5 118859468 119019029 + Ksr2 protein_coding retained_intron MGP_CASTEiJ_T0074013.1 MGP_CASTEiJ_G0029093.1 mouse_genomes_project 5 118859468 119249984 + MGP_CASTEiJ_P0074013 Ksr2 protein_coding protein_coding MGP_CASTEiJ_T0074014.1 MGP_CASTEiJ_G0029093.1 mouse_genomes_project 5 118860296 119240500 + MGP_CASTEiJ_P0074014 Ksr2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0074852.1 MGP_CASTEiJ_G0029239.1 mouse_genomes_project 5 132395872 132398612 + MGP_CASTEiJ_P0074852 Nupr1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074853.1 MGP_CASTEiJ_G0029239.1 mouse_genomes_project 5 132395874 132401163 + MGP_CASTEiJ_P0074853 Nupr1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074854.1 MGP_CASTEiJ_G0029239.1 mouse_genomes_project 5 132395901 132397734 + MGP_CASTEiJ_P0074854 Nupr1l protein_coding protein_coding MGP_CASTEiJ_T0074855.1 MGP_CASTEiJ_G0029239.1 mouse_genomes_project 5 132398300 132398612 + Nupr1l protein_coding processed_transcript MGP_CASTEiJ_T0076257.1 MGP_CASTEiJ_G0029508.1 mouse_genomes_project 5 155033648 155040497 + Brca2 protein_coding retained_intron MGP_CASTEiJ_T0076258.1 MGP_CASTEiJ_G0029508.1 mouse_genomes_project 5 155033648 155082502 + MGP_CASTEiJ_P0076258 Brca2 protein_coding protein_coding MGP_CASTEiJ_T0076259.1 MGP_CASTEiJ_G0029508.1 mouse_genomes_project 5 155033650 155047840 + Brca2 protein_coding retained_intron MGP_CASTEiJ_T0076260.1 MGP_CASTEiJ_G0029508.1 mouse_genomes_project 5 155033650 155050646 + MGP_CASTEiJ_P0076260 Brca2 protein_coding protein_coding MGP_CASTEiJ_T0076261.1 MGP_CASTEiJ_G0029508.1 mouse_genomes_project 5 155033668 155082503 + MGP_CASTEiJ_P0076261 Brca2 protein_coding protein_coding MGP_CASTEiJ_T0076262.1 MGP_CASTEiJ_G0029508.1 mouse_genomes_project 5 155033714 155037718 + Brca2 protein_coding processed_transcript MGP_CASTEiJ_T0076263.1 MGP_CASTEiJ_G0029508.1 mouse_genomes_project 5 155039840 155043067 + Brca2 protein_coding processed_transcript MGP_CASTEiJ_T0076264.1 MGP_CASTEiJ_G0029508.1 mouse_genomes_project 5 155064939 155067165 + Brca2 protein_coding retained_intron MGP_CASTEiJ_T0076265.1 MGP_CASTEiJ_G0029508.1 mouse_genomes_project 5 155066440 155069455 + Brca2 protein_coding retained_intron MGP_CASTEiJ_T0076266.1 MGP_CASTEiJ_G0029508.1 mouse_genomes_project 5 155069525 155072498 + Brca2 protein_coding retained_intron MGP_CASTEiJ_T0076267.1 MGP_CASTEiJ_G0029508.1 mouse_genomes_project 5 155079238 155082502 + Brca2 protein_coding processed_transcript MGP_CASTEiJ_T0076268.1 MGP_CASTEiJ_G0029508.1 mouse_genomes_project 5 155079519 155082088 + Brca2 protein_coding retained_intron MGP_CASTEiJ_T0076269.1 MGP_CASTEiJ_G0029508.1 mouse_genomes_project 5 155081399 155083085 + Brca2 protein_coding retained_intron MGP_CASTEiJ_T0008060.1 MGP_CASTEiJ_G0006583.1 mouse_genomes_project 5 109037411 109040482 + Gm10419 lincRNA lincRNA MGP_CASTEiJ_T0008061.1 MGP_CASTEiJ_G0006583.1 mouse_genomes_project 5 109037433 109043559 + Gm10419 lincRNA lincRNA MGP_CASTEiJ_T0008062.1 MGP_CASTEiJ_G0006583.1 mouse_genomes_project 5 109037877 109046603 + Gm10419 lincRNA lincRNA MGP_CASTEiJ_T0008063.1 MGP_CASTEiJ_G0006583.1 mouse_genomes_project 5 109040660 109048978 + Gm10419 lincRNA lincRNA MGP_CASTEiJ_T0008064.1 MGP_CASTEiJ_G0006583.1 mouse_genomes_project 5 109041636 109043560 + Gm10419 lincRNA lincRNA MGP_CASTEiJ_T0073745.1 MGP_CASTEiJ_G0029043.1 mouse_genomes_project 5 115592324 115602422 + MGP_CASTEiJ_P0073745 Mvk protein_coding protein_coding MGP_CASTEiJ_T0073746.1 MGP_CASTEiJ_G0029043.1 mouse_genomes_project 5 115592341 115610077 + MGP_CASTEiJ_P0073746 Mvk protein_coding protein_coding MGP_CASTEiJ_T0073747.1 MGP_CASTEiJ_G0029043.1 mouse_genomes_project 5 115592349 115610184 + Mvk protein_coding retained_intron MGP_CASTEiJ_T0073748.1 MGP_CASTEiJ_G0029043.1 mouse_genomes_project 5 115592358 115604757 + MGP_CASTEiJ_P0073748 Mvk protein_coding protein_coding MGP_CASTEiJ_T0073749.1 MGP_CASTEiJ_G0029043.1 mouse_genomes_project 5 115592358 115602422 + MGP_CASTEiJ_P0073749 Mvk protein_coding protein_coding MGP_CASTEiJ_T0073750.1 MGP_CASTEiJ_G0029043.1 mouse_genomes_project 5 115592361 115610191 + MGP_CASTEiJ_P0073750 Mvk protein_coding protein_coding MGP_CASTEiJ_T0073751.1 MGP_CASTEiJ_G0029043.1 mouse_genomes_project 5 115601693 115610172 + MGP_CASTEiJ_P0073751 Mvk protein_coding protein_coding MGP_CASTEiJ_T0008036.1 MGP_CASTEiJ_G0006565.1 mouse_genomes_project 5 104343911 104351321 - Gm42792 lincRNA lincRNA MGP_CASTEiJ_T0014613.1 MGP_CASTEiJ_G0012776.1 mouse_genomes_project 5 111877351 111877718 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098608.1 MGP_CASTEiJ_G0035539.1 mouse_genomes_project 5 20743409 20743502 - Gm24009 rRNA rRNA MGP_CASTEiJ_T0072193.1 MGP_CASTEiJ_G0028711.1 mouse_genomes_project 5 68421606 68437646 + MGP_CASTEiJ_P0072193 Guf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072194.1 MGP_CASTEiJ_G0028711.1 mouse_genomes_project 5 68421634 68455069 + MGP_CASTEiJ_P0072194 Guf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0072195.1 MGP_CASTEiJ_G0028711.1 mouse_genomes_project 5 68421636 68431406 + Guf1 protein_coding retained_intron MGP_CASTEiJ_T0072196.1 MGP_CASTEiJ_G0028711.1 mouse_genomes_project 5 68421636 68431565 + MGP_CASTEiJ_P0072196 Guf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072197.1 MGP_CASTEiJ_G0028711.1 mouse_genomes_project 5 68421644 68439030 + MGP_CASTEiJ_P0072197 Guf1 protein_coding protein_coding MGP_CASTEiJ_T0072198.1 MGP_CASTEiJ_G0028711.1 mouse_genomes_project 5 68421671 68437647 + MGP_CASTEiJ_P0072198 Guf1 protein_coding protein_coding MGP_CASTEiJ_T0072199.1 MGP_CASTEiJ_G0028711.1 mouse_genomes_project 5 68421756 68432425 + MGP_CASTEiJ_P0072199 Guf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072200.1 MGP_CASTEiJ_G0028711.1 mouse_genomes_project 5 68421777 68437691 + MGP_CASTEiJ_P0072200 Guf1 protein_coding protein_coding MGP_CASTEiJ_T0072201.1 MGP_CASTEiJ_G0028711.1 mouse_genomes_project 5 68431420 68443114 + Guf1 protein_coding retained_intron MGP_CASTEiJ_T0072202.1 MGP_CASTEiJ_G0028711.1 mouse_genomes_project 5 68434844 68437399 + Guf1 protein_coding retained_intron MGP_CASTEiJ_T0004590.1 MGP_CASTEiJ_G0003980.1 mouse_genomes_project 5 76196533 76197010 + antisense antisense MGP_CASTEiJ_T0004591.1 MGP_CASTEiJ_G0003980.1 mouse_genomes_project 5 76196773 76206897 + antisense antisense MGP_CASTEiJ_T0073841.1 MGP_CASTEiJ_G0029063.1 mouse_genomes_project 5 116356172 116371185 - MGP_CASTEiJ_P0073841 Mlec protein_coding protein_coding MGP_CASTEiJ_T0073842.1 MGP_CASTEiJ_G0029063.1 mouse_genomes_project 5 116361304 116364030 - Mlec protein_coding processed_transcript MGP_CASTEiJ_T0073270.1 MGP_CASTEiJ_G0028955.1 mouse_genomes_project 5 108227205 108276461 + MGP_CASTEiJ_P0073270 Rpap2 protein_coding protein_coding MGP_CASTEiJ_T0073271.1 MGP_CASTEiJ_G0028955.1 mouse_genomes_project 5 108227492 108295542 + MGP_CASTEiJ_P0073271 Rpap2 protein_coding protein_coding MGP_CASTEiJ_T0073272.1 MGP_CASTEiJ_G0028955.1 mouse_genomes_project 5 108227512 108276461 + MGP_CASTEiJ_P0073272 Rpap2 protein_coding protein_coding MGP_CASTEiJ_T0073273.1 MGP_CASTEiJ_G0028955.1 mouse_genomes_project 5 108227516 108231720 + Rpap2 protein_coding processed_transcript MGP_CASTEiJ_T0073274.1 MGP_CASTEiJ_G0028955.1 mouse_genomes_project 5 108227530 108295542 + MGP_CASTEiJ_P0073274 Rpap2 protein_coding protein_coding MGP_CASTEiJ_T0073275.1 MGP_CASTEiJ_G0028955.1 mouse_genomes_project 5 108227569 108276461 + MGP_CASTEiJ_P0073275 Rpap2 protein_coding protein_coding MGP_CASTEiJ_T0073276.1 MGP_CASTEiJ_G0028955.1 mouse_genomes_project 5 108227755 108231548 + MGP_CASTEiJ_P0073276 Rpap2 protein_coding protein_coding MGP_CASTEiJ_T0073277.1 MGP_CASTEiJ_G0028955.1 mouse_genomes_project 5 108227776 108238971 + MGP_CASTEiJ_P0073277 Rpap2 protein_coding protein_coding MGP_CASTEiJ_T0071223.1 MGP_CASTEiJ_G0028553.1 mouse_genomes_project 5 30820575 30855825 + Uvssa protein_coding retained_intron MGP_CASTEiJ_T0071224.1 MGP_CASTEiJ_G0028553.1 mouse_genomes_project 5 30820722 30865215 + MGP_CASTEiJ_P0071224 Uvssa protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071225.1 MGP_CASTEiJ_G0028553.1 mouse_genomes_project 5 30820722 30865215 + MGP_CASTEiJ_P0071225 Uvssa protein_coding protein_coding MGP_CASTEiJ_T0071226.1 MGP_CASTEiJ_G0028553.1 mouse_genomes_project 5 30820798 30865215 + MGP_CASTEiJ_P0071226 Uvssa protein_coding protein_coding MGP_CASTEiJ_T0001483.1 MGP_CASTEiJ_G0001409.1 mouse_genomes_project 5 42436584 42440336 - TEC TEC MGP_CASTEiJ_T0072503.1 MGP_CASTEiJ_G0028764.1 mouse_genomes_project 5 76571842 76593730 + MGP_CASTEiJ_P0072503 Rest protein_coding protein_coding MGP_CASTEiJ_T0072504.1 MGP_CASTEiJ_G0028764.1 mouse_genomes_project 5 76572547 76593730 + MGP_CASTEiJ_P0072504 Rest protein_coding protein_coding MGP_CASTEiJ_T0001661.1 MGP_CASTEiJ_G0001584.1 mouse_genomes_project 5 96673548 96674064 + TEC TEC MGP_CASTEiJ_T0014580.1 MGP_CASTEiJ_G0012743.1 mouse_genomes_project 5 103320664 103321252 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001837.1 MGP_CASTEiJ_G0001758.1 mouse_genomes_project 5 152484959 152485644 + TEC TEC MGP_CASTEiJ_T0075388.1 MGP_CASTEiJ_G0029334.1 mouse_genomes_project 5 140564720 140565514 - Gnb2 protein_coding retained_intron MGP_CASTEiJ_T0075389.1 MGP_CASTEiJ_G0029334.1 mouse_genomes_project 5 140564749 140568349 - MGP_CASTEiJ_P0075389 Gnb2 protein_coding protein_coding MGP_CASTEiJ_T0075390.1 MGP_CASTEiJ_G0029334.1 mouse_genomes_project 5 140565096 140570918 - MGP_CASTEiJ_P0075390 Gnb2 protein_coding protein_coding MGP_CASTEiJ_T0075391.1 MGP_CASTEiJ_G0029334.1 mouse_genomes_project 5 140565096 140567345 - MGP_CASTEiJ_P0075391 Gnb2 protein_coding protein_coding MGP_CASTEiJ_T0075392.1 MGP_CASTEiJ_G0029334.1 mouse_genomes_project 5 140565158 140567493 - Gnb2 protein_coding retained_intron MGP_CASTEiJ_T0075393.1 MGP_CASTEiJ_G0029334.1 mouse_genomes_project 5 140565365 140566456 - Gnb2 protein_coding retained_intron MGP_CASTEiJ_T0075394.1 MGP_CASTEiJ_G0029334.1 mouse_genomes_project 5 140565389 140566414 - Gnb2 protein_coding retained_intron MGP_CASTEiJ_T0075395.1 MGP_CASTEiJ_G0029334.1 mouse_genomes_project 5 140565466 140566370 - Gnb2 protein_coding retained_intron MGP_CASTEiJ_T0075396.1 MGP_CASTEiJ_G0029334.1 mouse_genomes_project 5 140565613 140567627 - MGP_CASTEiJ_P0075396 Gnb2 protein_coding protein_coding MGP_CASTEiJ_T0075397.1 MGP_CASTEiJ_G0029334.1 mouse_genomes_project 5 140565731 140568543 - MGP_CASTEiJ_P0075397 Gnb2 protein_coding protein_coding MGP_CASTEiJ_T0014458.1 MGP_CASTEiJ_G0012621.1 mouse_genomes_project 5 45466532 45467340 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074749.1 MGP_CASTEiJ_G0029219.1 mouse_genomes_project 5 129900641 129942743 - MGP_CASTEiJ_P0074749 Slc15a4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0074750.1 MGP_CASTEiJ_G0029219.1 mouse_genomes_project 5 129917486 129942691 - MGP_CASTEiJ_P0074750 Slc15a4 protein_coding protein_coding MGP_CASTEiJ_T0074751.1 MGP_CASTEiJ_G0029219.1 mouse_genomes_project 5 129917489 129942501 - MGP_CASTEiJ_P0074751 Slc15a4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074752.1 MGP_CASTEiJ_G0029219.1 mouse_genomes_project 5 129917489 129942693 - MGP_CASTEiJ_P0074752 Slc15a4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074753.1 MGP_CASTEiJ_G0029219.1 mouse_genomes_project 5 129918478 129928580 - MGP_CASTEiJ_P0074753 Slc15a4 protein_coding protein_coding MGP_CASTEiJ_T0074754.1 MGP_CASTEiJ_G0029219.1 mouse_genomes_project 5 129925827 129961498 - MGP_CASTEiJ_P0074754 Slc15a4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074755.1 MGP_CASTEiJ_G0029219.1 mouse_genomes_project 5 129927679 129928507 - Slc15a4 protein_coding processed_transcript MGP_CASTEiJ_T0074756.1 MGP_CASTEiJ_G0029219.1 mouse_genomes_project 5 129927679 129928507 - Slc15a4 protein_coding processed_transcript MGP_CASTEiJ_T0074757.1 MGP_CASTEiJ_G0029219.1 mouse_genomes_project 5 129927705 129933324 - MGP_CASTEiJ_P0074757 Slc15a4 protein_coding protein_coding MGP_CASTEiJ_T0074758.1 MGP_CASTEiJ_G0029219.1 mouse_genomes_project 5 129928505 129942158 - Slc15a4 protein_coding processed_transcript MGP_CASTEiJ_T0074759.1 MGP_CASTEiJ_G0029219.1 mouse_genomes_project 5 129932694 129961515 - MGP_CASTEiJ_P0074759 Slc15a4 protein_coding protein_coding MGP_CASTEiJ_T0074760.1 MGP_CASTEiJ_G0029219.1 mouse_genomes_project 5 129938485 129942656 - Slc15a4 protein_coding retained_intron MGP_CASTEiJ_T0073690.1 MGP_CASTEiJ_G0029033.1 mouse_genomes_project 5 115133509 115205278 - MGP_CASTEiJ_P0073690 Svop protein_coding protein_coding MGP_CASTEiJ_T0073691.1 MGP_CASTEiJ_G0029033.1 mouse_genomes_project 5 115134723 115178508 - Svop protein_coding processed_transcript MGP_CASTEiJ_T0073692.1 MGP_CASTEiJ_G0029033.1 mouse_genomes_project 5 115141551 115151028 - Svop protein_coding retained_intron MGP_CASTEiJ_T0073693.1 MGP_CASTEiJ_G0029033.1 mouse_genomes_project 5 115161906 115205092 - Svop protein_coding retained_intron MGP_CASTEiJ_T0073694.1 MGP_CASTEiJ_G0029033.1 mouse_genomes_project 5 115162674 115205079 - MGP_CASTEiJ_P0073694 Svop protein_coding protein_coding MGP_CASTEiJ_T0008103.1 MGP_CASTEiJ_G0006605.1 mouse_genomes_project 5 115713597 115716326 + Gm13790 lincRNA lincRNA MGP_CASTEiJ_T0099928.1 MGP_CASTEiJ_G0036841.1 mouse_genomes_project 5 141283626 141283704 + Gm22956 snRNA snRNA MGP_CASTEiJ_T0074589.1 MGP_CASTEiJ_G0029192.1 mouse_genomes_project 5 126260001 126260955 + MGP_CASTEiJ_P0074589 Arl6ip4 protein_coding protein_coding MGP_CASTEiJ_T0074590.1 MGP_CASTEiJ_G0029192.1 mouse_genomes_project 5 126260011 126262109 + MGP_CASTEiJ_P0074590 Arl6ip4 protein_coding protein_coding MGP_CASTEiJ_T0074591.1 MGP_CASTEiJ_G0029192.1 mouse_genomes_project 5 126260034 126262009 + MGP_CASTEiJ_P0074591 Arl6ip4 protein_coding protein_coding MGP_CASTEiJ_T0074592.1 MGP_CASTEiJ_G0029192.1 mouse_genomes_project 5 126260591 126261947 + MGP_CASTEiJ_P0074592 Arl6ip4 protein_coding protein_coding MGP_CASTEiJ_T0074593.1 MGP_CASTEiJ_G0029192.1 mouse_genomes_project 5 126261223 126262104 + MGP_CASTEiJ_P0074593 Arl6ip4 protein_coding protein_coding MGP_CASTEiJ_T0073754.1 MGP_CASTEiJ_G0029045.1 mouse_genomes_project 5 115785458 115821747 - MGP_CASTEiJ_P0073754 Trpv4 protein_coding protein_coding MGP_CASTEiJ_T0073755.1 MGP_CASTEiJ_G0029045.1 mouse_genomes_project 5 115785460 115821744 - MGP_CASTEiJ_P0073755 Trpv4 protein_coding protein_coding MGP_CASTEiJ_T0073756.1 MGP_CASTEiJ_G0029045.1 mouse_genomes_project 5 115785463 115799502 - Trpv4 protein_coding retained_intron MGP_CASTEiJ_T0073757.1 MGP_CASTEiJ_G0029045.1 mouse_genomes_project 5 115785947 115808417 - MGP_CASTEiJ_P0073757 Trpv4 protein_coding protein_coding MGP_CASTEiJ_T0073758.1 MGP_CASTEiJ_G0029045.1 mouse_genomes_project 5 115785947 115808417 - MGP_CASTEiJ_P0073758 Trpv4 protein_coding protein_coding MGP_CASTEiJ_T0073759.1 MGP_CASTEiJ_G0029045.1 mouse_genomes_project 5 115785947 115808417 - MGP_CASTEiJ_P0073759 Trpv4 protein_coding protein_coding MGP_CASTEiJ_T0073760.1 MGP_CASTEiJ_G0029045.1 mouse_genomes_project 5 115790432 115794237 - Trpv4 protein_coding retained_intron MGP_CASTEiJ_T0073147.1 MGP_CASTEiJ_G0028922.1 mouse_genomes_project 5 104400382 104413850 + MGP_CASTEiJ_P0073147 Ibsp protein_coding protein_coding MGP_CASTEiJ_T0014586.1 MGP_CASTEiJ_G0012749.1 mouse_genomes_project 5 106284638 106285031 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076145.1 MGP_CASTEiJ_G0029492.1 mouse_genomes_project 5 152222198 152592443 + MGP_CASTEiJ_P0076145 Mtus2 protein_coding protein_coding MGP_CASTEiJ_T0076146.1 MGP_CASTEiJ_G0029492.1 mouse_genomes_project 5 152222220 152346942 + MGP_CASTEiJ_P0076146 Mtus2 protein_coding protein_coding MGP_CASTEiJ_T0076147.1 MGP_CASTEiJ_G0029492.1 mouse_genomes_project 5 152353411 152505072 + Mtus2 protein_coding retained_intron MGP_CASTEiJ_T0076148.1 MGP_CASTEiJ_G0029492.1 mouse_genomes_project 5 152364796 152482741 + Mtus2 protein_coding processed_transcript MGP_CASTEiJ_T0076149.1 MGP_CASTEiJ_G0029492.1 mouse_genomes_project 5 152507471 152510669 + Mtus2 protein_coding retained_intron MGP_CASTEiJ_T0076150.1 MGP_CASTEiJ_G0029492.1 mouse_genomes_project 5 152537222 152590106 + MGP_CASTEiJ_P0076150 Mtus2 protein_coding protein_coding MGP_CASTEiJ_T0076151.1 MGP_CASTEiJ_G0029492.1 mouse_genomes_project 5 152537226 152589926 + MGP_CASTEiJ_P0076151 Mtus2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076152.1 MGP_CASTEiJ_G0029492.1 mouse_genomes_project 5 152537314 152592440 + MGP_CASTEiJ_P0076152 Mtus2 protein_coding protein_coding MGP_CASTEiJ_T0076153.1 MGP_CASTEiJ_G0029492.1 mouse_genomes_project 5 152579675 152589834 + MGP_CASTEiJ_P0076153 Mtus2 protein_coding protein_coding MGP_CASTEiJ_T0076154.1 MGP_CASTEiJ_G0029492.1 mouse_genomes_project 5 152579684 152590373 + MGP_CASTEiJ_P0076154 Mtus2 protein_coding protein_coding MGP_CASTEiJ_T0004649.1 MGP_CASTEiJ_G0004022.1 mouse_genomes_project 5 115881407 115881973 - Gm42789 antisense antisense MGP_CASTEiJ_T0102363.1 MGP_CASTEiJ_G0039088.1 mouse_genomes_project 5 146819582 146820521 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0007841.1 MGP_CASTEiJ_G0006420.1 mouse_genomes_project 5 4692412 4935579 - lincRNA lincRNA MGP_CASTEiJ_T0001632.1 MGP_CASTEiJ_G0001555.1 mouse_genomes_project 5 73139037 73141762 - TEC TEC MGP_CASTEiJ_T0075881.1 MGP_CASTEiJ_G0029435.1 mouse_genomes_project 5 147225070 147253790 - MGP_CASTEiJ_P0075881 Rac1 protein_coding protein_coding MGP_CASTEiJ_T0075882.1 MGP_CASTEiJ_G0029435.1 mouse_genomes_project 5 147229310 147253551 - MGP_CASTEiJ_P0075882 Rac1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0075883.1 MGP_CASTEiJ_G0029435.1 mouse_genomes_project 5 147229950 147243970 - Rac1 protein_coding processed_transcript MGP_CASTEiJ_T0075884.1 MGP_CASTEiJ_G0029435.1 mouse_genomes_project 5 147240453 147243396 - Rac1 protein_coding processed_transcript MGP_CASTEiJ_T0076046.1 MGP_CASTEiJ_G0029469.1 mouse_genomes_project 5 150016889 150056856 + MGP_CASTEiJ_P0076046 Cyp3a25 protein_coding unknown_likely_coding MGP_CASTEiJ_T0004678.1 MGP_CASTEiJ_G0004040.1 mouse_genomes_project 5 122372642 122373949 - Gm43579 antisense antisense MGP_CASTEiJ_T0101117.1 MGP_CASTEiJ_G0038030.1 mouse_genomes_project 5 60633792 60633924 - Gm22273 snoRNA snoRNA MGP_CASTEiJ_T0072167.1 MGP_CASTEiJ_G0028704.1 mouse_genomes_project 5 66466506 66472674 + MGP_CASTEiJ_P0072167 Shisa3 protein_coding protein_coding MGP_CASTEiJ_T0072168.1 MGP_CASTEiJ_G0028704.1 mouse_genomes_project 5 66466593 66482217 + MGP_CASTEiJ_P0072168 Shisa3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0017391.1 MGP_CASTEiJ_G0014911.1 mouse_genomes_project 5 34203744 34233299 - Gm42936 processed_transcript processed_transcript MGP_CASTEiJ_T0014593.1 MGP_CASTEiJ_G0012756.1 mouse_genomes_project 5 107848965 107849710 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071953.1 MGP_CASTEiJ_G0028673.1 mouse_genomes_project 5 62641705 62678874 + MGP_CASTEiJ_P0071953 Pgm1 protein_coding protein_coding MGP_CASTEiJ_T0071954.1 MGP_CASTEiJ_G0028673.1 mouse_genomes_project 5 62654714 62663158 + MGP_CASTEiJ_P0071954 Pgm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071955.1 MGP_CASTEiJ_G0028673.1 mouse_genomes_project 5 62659003 62660886 + Pgm1 protein_coding retained_intron MGP_CASTEiJ_T0071956.1 MGP_CASTEiJ_G0028673.1 mouse_genomes_project 5 62664928 62678691 + MGP_CASTEiJ_P0071956 Pgm1 protein_coding protein_coding MGP_CASTEiJ_T0004744.1 MGP_CASTEiJ_G0004089.1 mouse_genomes_project 5 145137378 145152144 - Gm16036 antisense antisense MGP_CASTEiJ_T0072342.1 MGP_CASTEiJ_G0028738.1 mouse_genomes_project 5 73027120 73111176 - MGP_CASTEiJ_P0072342 Usp46 protein_coding protein_coding MGP_CASTEiJ_T0072343.1 MGP_CASTEiJ_G0028738.1 mouse_genomes_project 5 73027381 73111187 - MGP_CASTEiJ_P0072343 Usp46 protein_coding protein_coding MGP_CASTEiJ_T0072344.1 MGP_CASTEiJ_G0028738.1 mouse_genomes_project 5 73030484 73072261 - Usp46 protein_coding processed_transcript MGP_CASTEiJ_T0072345.1 MGP_CASTEiJ_G0028738.1 mouse_genomes_project 5 73061228 73065986 - MGP_CASTEiJ_P0072345 Usp46 protein_coding protein_coding MGP_CASTEiJ_T0072346.1 MGP_CASTEiJ_G0028738.1 mouse_genomes_project 5 73065887 73069218 - Usp46 protein_coding retained_intron MGP_CASTEiJ_T0072347.1 MGP_CASTEiJ_G0028738.1 mouse_genomes_project 5 73065933 73107206 - MGP_CASTEiJ_P0072347 Usp46 protein_coding protein_coding MGP_CASTEiJ_T0007967.1 MGP_CASTEiJ_G0006509.1 mouse_genomes_project 5 74229114 74268292 + Gm19583 lincRNA lincRNA MGP_CASTEiJ_T0007971.1 MGP_CASTEiJ_G0006512.1 mouse_genomes_project 5 74915490 74920808 - Gm43100 lincRNA lincRNA MGP_CASTEiJ_T0071279.1 MGP_CASTEiJ_G0028562.1 mouse_genomes_project 5 31295042 31375915 + MGP_CASTEiJ_P0071279 Whsc1 protein_coding protein_coding MGP_CASTEiJ_T0071280.1 MGP_CASTEiJ_G0028562.1 mouse_genomes_project 5 31295061 31350025 + MGP_CASTEiJ_P0071280 Whsc1 protein_coding protein_coding MGP_CASTEiJ_T0071281.1 MGP_CASTEiJ_G0028562.1 mouse_genomes_project 5 31295146 31322703 + MGP_CASTEiJ_P0071281 Whsc1 protein_coding protein_coding MGP_CASTEiJ_T0071282.1 MGP_CASTEiJ_G0028562.1 mouse_genomes_project 5 31319632 31354751 + MGP_CASTEiJ_P0071282 Whsc1 protein_coding protein_coding MGP_CASTEiJ_T0071283.1 MGP_CASTEiJ_G0028562.1 mouse_genomes_project 5 31319632 31375924 + MGP_CASTEiJ_P0071283 Whsc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071284.1 MGP_CASTEiJ_G0028562.1 mouse_genomes_project 5 31319632 31375924 + MGP_CASTEiJ_P0071284 Whsc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071285.1 MGP_CASTEiJ_G0028562.1 mouse_genomes_project 5 31319632 31375915 + MGP_CASTEiJ_P0071285 Whsc1 protein_coding protein_coding MGP_CASTEiJ_T0071286.1 MGP_CASTEiJ_G0028562.1 mouse_genomes_project 5 31319661 31373659 + MGP_CASTEiJ_P0071286 Whsc1 protein_coding protein_coding MGP_CASTEiJ_T0071287.1 MGP_CASTEiJ_G0028562.1 mouse_genomes_project 5 31319716 31373442 + MGP_CASTEiJ_P0071287 Whsc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071288.1 MGP_CASTEiJ_G0028562.1 mouse_genomes_project 5 31338665 31354759 + MGP_CASTEiJ_P0071288 Whsc1 protein_coding protein_coding MGP_CASTEiJ_T0071289.1 MGP_CASTEiJ_G0028562.1 mouse_genomes_project 5 31355682 31357567 + Whsc1 protein_coding retained_intron MGP_CASTEiJ_T0071290.1 MGP_CASTEiJ_G0028562.1 mouse_genomes_project 5 31356621 31373373 + MGP_CASTEiJ_P0071290 Whsc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071291.1 MGP_CASTEiJ_G0028562.1 mouse_genomes_project 5 31363462 31369624 + Whsc1 protein_coding retained_intron MGP_CASTEiJ_T0071292.1 MGP_CASTEiJ_G0028562.1 mouse_genomes_project 5 31363476 31365676 + Whsc1 protein_coding retained_intron MGP_CASTEiJ_T0071293.1 MGP_CASTEiJ_G0028562.1 mouse_genomes_project 5 31369854 31373042 + Whsc1 protein_coding retained_intron MGP_CASTEiJ_T0001555.1 MGP_CASTEiJ_G0001480.1 mouse_genomes_project 5 56245295 56247399 + TEC TEC MGP_CASTEiJ_T0070535.1 MGP_CASTEiJ_G0028436.1 mouse_genomes_project 5 19819904 20382023 + MGP_CASTEiJ_P0070535 Lhfpl3 protein_coding protein_coding MGP_CASTEiJ_T0070537.1 MGP_CASTEiJ_G0028436.1 mouse_genomes_project 5 20204138 20382014 + MGP_CASTEiJ_P0070537 Lhfpl3 protein_coding protein_coding MGP_CASTEiJ_T0075292.1 MGP_CASTEiJ_G0029313.1 mouse_genomes_project 5 139901128 139908312 + MGP_CASTEiJ_P0075292 Ift22 protein_coding protein_coding MGP_CASTEiJ_T0075293.1 MGP_CASTEiJ_G0029313.1 mouse_genomes_project 5 139901176 139905957 + MGP_CASTEiJ_P0075293 Ift22 protein_coding protein_coding MGP_CASTEiJ_T0075294.1 MGP_CASTEiJ_G0029313.1 mouse_genomes_project 5 139901180 139905053 + MGP_CASTEiJ_P0075294 Ift22 protein_coding protein_coding MGP_CASTEiJ_T0075295.1 MGP_CASTEiJ_G0029313.1 mouse_genomes_project 5 139901221 139906166 + MGP_CASTEiJ_P0075295 Ift22 protein_coding protein_coding MGP_CASTEiJ_T0075296.1 MGP_CASTEiJ_G0029313.1 mouse_genomes_project 5 139903726 139904336 + Ift22 protein_coding retained_intron MGP_CASTEiJ_T0072333.1 MGP_CASTEiJ_G0028735.1 mouse_genomes_project 5 72624327 72651618 - MGP_CASTEiJ_P0072333 Lrrc66 protein_coding protein_coding MGP_CASTEiJ_T0072334.1 MGP_CASTEiJ_G0028735.1 mouse_genomes_project 5 72648776 72649413 - MGP_CASTEiJ_P0072334 Lrrc66 protein_coding protein_coding MGP_CASTEiJ_T0073834.1 MGP_CASTEiJ_G0029061.1 mouse_genomes_project 5 116322302 116333355 - Acads protein_coding retained_intron MGP_CASTEiJ_T0073835.1 MGP_CASTEiJ_G0029061.1 mouse_genomes_project 5 116322302 116333414 - MGP_CASTEiJ_P0073835 Acads protein_coding protein_coding MGP_CASTEiJ_T0073836.1 MGP_CASTEiJ_G0029061.1 mouse_genomes_project 5 116323998 116333378 - Acads protein_coding processed_transcript MGP_CASTEiJ_T0073837.1 MGP_CASTEiJ_G0029061.1 mouse_genomes_project 5 116324786 116333343 - Acads protein_coding retained_intron MGP_CASTEiJ_T0014459.1 MGP_CASTEiJ_G0012622.1 mouse_genomes_project 5 45528484 45528932 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001793.1 MGP_CASTEiJ_G0001715.1 mouse_genomes_project 5 134601310 134604873 - TEC TEC MGP_CASTEiJ_T0072736.1 MGP_CASTEiJ_G0028830.1 mouse_genomes_project 5 90566854 90582261 + MGP_CASTEiJ_P0072736 Alb protein_coding protein_coding MGP_CASTEiJ_T0072737.1 MGP_CASTEiJ_G0028830.1 mouse_genomes_project 5 90568284 90568688 + Alb protein_coding processed_transcript MGP_CASTEiJ_T0072738.1 MGP_CASTEiJ_G0028830.1 mouse_genomes_project 5 90568665 90580320 + Alb protein_coding processed_transcript MGP_CASTEiJ_T0075233.1 MGP_CASTEiJ_G0029304.1 mouse_genomes_project 5 139055743 139062060 + MGP_CASTEiJ_P0075233 Polr2j protein_coding protein_coding MGP_CASTEiJ_T0075234.1 MGP_CASTEiJ_G0029304.1 mouse_genomes_project 5 139055743 139061836 + MGP_CASTEiJ_P0075234 Polr2j protein_coding protein_coding MGP_CASTEiJ_T0075235.1 MGP_CASTEiJ_G0029304.1 mouse_genomes_project 5 139055814 139062049 + MGP_CASTEiJ_P0075235 Polr2j protein_coding protein_coding MGP_CASTEiJ_T0001451.1 MGP_CASTEiJ_G0001377.1 mouse_genomes_project 5 31965790 31968184 + TEC TEC MGP_CASTEiJ_T0001724.1 MGP_CASTEiJ_G0001647.1 mouse_genomes_project 5 119519668 119520588 - TEC TEC MGP_CASTEiJ_T0073111.1 MGP_CASTEiJ_G0028911.1 mouse_genomes_project 5 103671562 103697641 - MGP_CASTEiJ_P0073111 Slc10a6 protein_coding protein_coding MGP_CASTEiJ_T0010386.1 MGP_CASTEiJ_G0008574.1 mouse_genomes_project 5 64713324 64713398 + Gm25952 miRNA miRNA MGP_CASTEiJ_T0070538.1 MGP_CASTEiJ_G0028438.1 mouse_genomes_project 5 20493242 20548991 + MGP_CASTEiJ_P0070538 Kmt2e protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070539.1 MGP_CASTEiJ_G0028438.1 mouse_genomes_project 5 20493250 20566568 + MGP_CASTEiJ_P0070539 Kmt2e protein_coding protein_coding MGP_CASTEiJ_T0070540.1 MGP_CASTEiJ_G0028438.1 mouse_genomes_project 5 20541169 20548042 + Kmt2e protein_coding processed_transcript MGP_CASTEiJ_T0070541.1 MGP_CASTEiJ_G0028438.1 mouse_genomes_project 5 20548091 20558818 + MGP_CASTEiJ_P0070541 Kmt2e protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070542.1 MGP_CASTEiJ_G0028438.1 mouse_genomes_project 5 20548139 20565204 + MGP_CASTEiJ_P0070542 Kmt2e protein_coding protein_coding MGP_CASTEiJ_T0070543.1 MGP_CASTEiJ_G0028438.1 mouse_genomes_project 5 20555023 20563091 + MGP_CASTEiJ_P0070543 Kmt2e protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070544.1 MGP_CASTEiJ_G0028438.1 mouse_genomes_project 5 20555562 20558968 + Kmt2e protein_coding retained_intron MGP_CASTEiJ_T0070545.1 MGP_CASTEiJ_G0028438.1 mouse_genomes_project 5 20560882 20563134 + MGP_CASTEiJ_P0070545 Kmt2e protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072098.1 MGP_CASTEiJ_G0028696.1 mouse_genomes_project 5 65028425 65067395 + MGP_CASTEiJ_P0072098 Nsun7 protein_coding protein_coding MGP_CASTEiJ_T0072099.1 MGP_CASTEiJ_G0028696.1 mouse_genomes_project 5 65028440 65068361 + MGP_CASTEiJ_P0072099 Nsun7 protein_coding protein_coding MGP_CASTEiJ_T0072100.1 MGP_CASTEiJ_G0028696.1 mouse_genomes_project 5 65028546 65034289 + Nsun7 protein_coding retained_intron MGP_CASTEiJ_T0072101.1 MGP_CASTEiJ_G0028696.1 mouse_genomes_project 5 65028840 65068350 + MGP_CASTEiJ_P0072101 Nsun7 protein_coding protein_coding MGP_CASTEiJ_T0073528.1 MGP_CASTEiJ_G0029000.1 mouse_genomes_project 5 111693822 111695174 + MGP_CASTEiJ_P0073528 Chek2 protein_coding protein_coding MGP_CASTEiJ_T0073529.1 MGP_CASTEiJ_G0029000.1 mouse_genomes_project 5 111693826 111728950 + MGP_CASTEiJ_P0073529 Chek2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073530.1 MGP_CASTEiJ_G0029000.1 mouse_genomes_project 5 111693843 111728962 + MGP_CASTEiJ_P0073530 Chek2 protein_coding protein_coding MGP_CASTEiJ_T0073531.1 MGP_CASTEiJ_G0029000.1 mouse_genomes_project 5 111694072 111695180 + MGP_CASTEiJ_P0073531 Chek2 protein_coding protein_coding MGP_CASTEiJ_T0073532.1 MGP_CASTEiJ_G0029000.1 mouse_genomes_project 5 111695294 111704919 + Chek2 protein_coding retained_intron MGP_CASTEiJ_T0014398.1 MGP_CASTEiJ_G0012561.1 mouse_genomes_project 5 21354812 21356279 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008263.1 MGP_CASTEiJ_G0006714.1 mouse_genomes_project 5 154318523 154321149 - Gm43450 lincRNA lincRNA MGP_CASTEiJ_T0075214.1 MGP_CASTEiJ_G0029302.1 mouse_genomes_project 5 138981406 138991149 + Upk3bl protein_coding processed_transcript MGP_CASTEiJ_T0075215.1 MGP_CASTEiJ_G0029302.1 mouse_genomes_project 5 138984131 138991149 + MGP_CASTEiJ_P0075215 Upk3bl protein_coding protein_coding MGP_CASTEiJ_T0075216.1 MGP_CASTEiJ_G0029302.1 mouse_genomes_project 5 138984207 138991151 + MGP_CASTEiJ_P0075216 Upk3bl protein_coding protein_coding MGP_CASTEiJ_T0075217.1 MGP_CASTEiJ_G0029302.1 mouse_genomes_project 5 138984207 138991144 + MGP_CASTEiJ_P0075217 Upk3bl protein_coding protein_coding MGP_CASTEiJ_T0075218.1 MGP_CASTEiJ_G0029302.1 mouse_genomes_project 5 138986974 138991135 + Upk3bl protein_coding processed_transcript MGP_CASTEiJ_T0075219.1 MGP_CASTEiJ_G0029302.1 mouse_genomes_project 5 138987047 138991137 + MGP_CASTEiJ_P0075219 Upk3bl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001471.1 MGP_CASTEiJ_G0001397.1 mouse_genomes_project 5 41494961 41497284 - TEC TEC MGP_CASTEiJ_T0014415.1 MGP_CASTEiJ_G0012578.1 mouse_genomes_project 5 25190165 25191466 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075461.1 MGP_CASTEiJ_G0029345.1 mouse_genomes_project 5 140786075 140796047 - MGP_CASTEiJ_P0075461 Nyap1 protein_coding protein_coding MGP_CASTEiJ_T0075462.1 MGP_CASTEiJ_G0029345.1 mouse_genomes_project 5 140787111 140797662 - MGP_CASTEiJ_P0075462 Nyap1 protein_coding protein_coding MGP_CASTEiJ_T0075463.1 MGP_CASTEiJ_G0029345.1 mouse_genomes_project 5 140787874 140795767 - MGP_CASTEiJ_P0075463 Nyap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0075464.1 MGP_CASTEiJ_G0029345.1 mouse_genomes_project 5 140789123 140797157 - MGP_CASTEiJ_P0075464 Nyap1 protein_coding protein_coding MGP_CASTEiJ_T0001464.1 MGP_CASTEiJ_G0001390.1 mouse_genomes_project 5 40842381 40848689 - TEC TEC MGP_CASTEiJ_T0001730.1 MGP_CASTEiJ_G0001653.1 mouse_genomes_project 5 120263397 120266090 + TEC TEC MGP_CASTEiJ_T0010365.1 MGP_CASTEiJ_G0008553.1 mouse_genomes_project 5 11079718 11079823 - Gm24054 miRNA miRNA MGP_CASTEiJ_T0001477.1 MGP_CASTEiJ_G0001403.1 mouse_genomes_project 5 42100156 42100511 + TEC TEC MGP_CASTEiJ_T0071551.1 MGP_CASTEiJ_G0028605.1 mouse_genomes_project 5 34587452 34610565 - MGP_CASTEiJ_P0071551 Wfs1 protein_coding protein_coding MGP_CASTEiJ_T0071552.1 MGP_CASTEiJ_G0028605.1 mouse_genomes_project 5 34587455 34610293 - MGP_CASTEiJ_P0071552 Wfs1 protein_coding protein_coding MGP_CASTEiJ_T0071553.1 MGP_CASTEiJ_G0028605.1 mouse_genomes_project 5 34588167 34610244 - MGP_CASTEiJ_P0071553 Wfs1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071554.1 MGP_CASTEiJ_G0028605.1 mouse_genomes_project 5 34589849 34598344 - MGP_CASTEiJ_P0071554 Wfs1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000002.1 MGP_CASTEiJ_G0000002.1 mouse_genomes_project 5 17699998 17703802 + Gm29254 3prime_overlapping_ncRNA 3prime_overlapping_ncRNA MGP_CASTEiJ_T0000003.1 MGP_CASTEiJ_G0000002.1 mouse_genomes_project 5 17699998 17703800 + Gm29254 3prime_overlapping_ncRNA 3prime_overlapping_ncRNA MGP_CASTEiJ_T0007941.1 MGP_CASTEiJ_G0006490.1 mouse_genomes_project 5 62954046 62958887 + lincRNA lincRNA MGP_CASTEiJ_T0072603.1 MGP_CASTEiJ_G0028787.1 mouse_genomes_project 5 87018400 87036337 - MGP_CASTEiJ_P0072603 protein_coding protein_coding MGP_CASTEiJ_T0072815.1 MGP_CASTEiJ_G0028853.1 mouse_genomes_project 5 92388184 92393702 - MGP_CASTEiJ_P0072815 U90926 protein_coding protein_coding MGP_CASTEiJ_T0072816.1 MGP_CASTEiJ_G0028853.1 mouse_genomes_project 5 92388187 92393702 - MGP_CASTEiJ_P0072816 U90926 protein_coding protein_coding MGP_CASTEiJ_T0072817.1 MGP_CASTEiJ_G0028853.1 mouse_genomes_project 5 92388405 92390656 - U90926 protein_coding retained_intron MGP_CASTEiJ_T0071989.1 MGP_CASTEiJ_G0028681.1 mouse_genomes_project 5 63835661 63900185 + MGP_CASTEiJ_P0071989 Wdr19 protein_coding protein_coding MGP_CASTEiJ_T0071990.1 MGP_CASTEiJ_G0028681.1 mouse_genomes_project 5 63835663 63900194 + MGP_CASTEiJ_P0071990 Wdr19 protein_coding protein_coding MGP_CASTEiJ_T0071991.1 MGP_CASTEiJ_G0028681.1 mouse_genomes_project 5 63835665 63841272 + Wdr19 protein_coding retained_intron MGP_CASTEiJ_T0071992.1 MGP_CASTEiJ_G0028681.1 mouse_genomes_project 5 63835682 63882148 + Wdr19 protein_coding retained_intron MGP_CASTEiJ_T0071993.1 MGP_CASTEiJ_G0028681.1 mouse_genomes_project 5 63835696 63868898 + Wdr19 protein_coding retained_intron MGP_CASTEiJ_T0071994.1 MGP_CASTEiJ_G0028681.1 mouse_genomes_project 5 63835705 63861048 + Wdr19 protein_coding retained_intron MGP_CASTEiJ_T0071995.1 MGP_CASTEiJ_G0028681.1 mouse_genomes_project 5 63838561 63900189 + Wdr19 protein_coding retained_intron MGP_CASTEiJ_T0071996.1 MGP_CASTEiJ_G0028681.1 mouse_genomes_project 5 63896230 63900188 + MGP_CASTEiJ_P0071996 Wdr19 protein_coding protein_coding MGP_CASTEiJ_T0101107.1 MGP_CASTEiJ_G0038020.1 mouse_genomes_project 5 20779330 20779395 - Mir3096 snoRNA snoRNA MGP_CASTEiJ_T0072472.1 MGP_CASTEiJ_G0028757.1 mouse_genomes_project 5 76181348 76210724 - MGP_CASTEiJ_P0072472 Ppat protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072473.1 MGP_CASTEiJ_G0028757.1 mouse_genomes_project 5 76181375 76210730 - MGP_CASTEiJ_P0072473 Ppat protein_coding protein_coding MGP_CASTEiJ_T0072474.1 MGP_CASTEiJ_G0028757.1 mouse_genomes_project 5 76183144 76210317 - Ppat protein_coding retained_intron MGP_CASTEiJ_T0010425.1 MGP_CASTEiJ_G0008613.1 mouse_genomes_project 5 139045244 139045326 + Mir7035 miRNA miRNA MGP_CASTEiJ_T0011281.1 MGP_CASTEiJ_G0009469.1 mouse_genomes_project 5 126409334 126409597 + Gm23171 misc_RNA misc_RNA MGP_CASTEiJ_T0014565.1 MGP_CASTEiJ_G0012728.1 mouse_genomes_project 5 95872611 95873025 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075093.1 MGP_CASTEiJ_G0029275.1 mouse_genomes_project 5 137914447 137915968 + MGP_CASTEiJ_P0075093 Dnajc30 protein_coding protein_coding MGP_CASTEiJ_T0070319.1 MGP_CASTEiJ_G0028397.1 mouse_genomes_project 5 5409318 5442085 + MGP_CASTEiJ_P0070319 Slc25a40 protein_coding protein_coding MGP_CASTEiJ_T0070320.1 MGP_CASTEiJ_G0028397.1 mouse_genomes_project 5 5409326 5415106 + Slc25a40 protein_coding retained_intron MGP_CASTEiJ_T0070321.1 MGP_CASTEiJ_G0028397.1 mouse_genomes_project 5 5409326 5442077 + MGP_CASTEiJ_P0070321 Slc25a40 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070322.1 MGP_CASTEiJ_G0028397.1 mouse_genomes_project 5 5409341 5442042 + Slc25a40 protein_coding retained_intron MGP_CASTEiJ_T0070323.1 MGP_CASTEiJ_G0028397.1 mouse_genomes_project 5 5409367 5442024 + MGP_CASTEiJ_P0070323 Slc25a40 protein_coding protein_coding MGP_CASTEiJ_T0070324.1 MGP_CASTEiJ_G0028397.1 mouse_genomes_project 5 5411303 5429853 + MGP_CASTEiJ_P0070324 Slc25a40 protein_coding protein_coding MGP_CASTEiJ_T0070325.1 MGP_CASTEiJ_G0028397.1 mouse_genomes_project 5 5416610 5417032 + Slc25a40 protein_coding retained_intron MGP_CASTEiJ_T0070326.1 MGP_CASTEiJ_G0028397.1 mouse_genomes_project 5 5431185 5437226 + Slc25a40 protein_coding retained_intron MGP_CASTEiJ_T0007934.1 MGP_CASTEiJ_G0006484.1 mouse_genomes_project 5 56742099 56752875 - 4930459L07Rik lincRNA lincRNA MGP_CASTEiJ_T0076185.1 MGP_CASTEiJ_G0029498.1 mouse_genomes_project 5 153567483 153598235 + MGP_CASTEiJ_P0076185 Uspl1 protein_coding protein_coding MGP_CASTEiJ_T0076186.1 MGP_CASTEiJ_G0029498.1 mouse_genomes_project 5 153567670 153598241 + MGP_CASTEiJ_P0076186 Uspl1 protein_coding protein_coding MGP_CASTEiJ_T0076187.1 MGP_CASTEiJ_G0029498.1 mouse_genomes_project 5 153567773 153598237 + MGP_CASTEiJ_P0076187 Uspl1 protein_coding protein_coding MGP_CASTEiJ_T0076188.1 MGP_CASTEiJ_G0029498.1 mouse_genomes_project 5 153567776 153598238 + MGP_CASTEiJ_P0076188 Uspl1 protein_coding protein_coding MGP_CASTEiJ_T0076189.1 MGP_CASTEiJ_G0029498.1 mouse_genomes_project 5 153567777 153598237 + MGP_CASTEiJ_P0076189 Uspl1 protein_coding protein_coding MGP_CASTEiJ_T0076190.1 MGP_CASTEiJ_G0029498.1 mouse_genomes_project 5 153567788 153577448 + MGP_CASTEiJ_P0076190 Uspl1 protein_coding protein_coding MGP_CASTEiJ_T0076191.1 MGP_CASTEiJ_G0029498.1 mouse_genomes_project 5 153567788 153598237 + MGP_CASTEiJ_P0076191 Uspl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076192.1 MGP_CASTEiJ_G0029498.1 mouse_genomes_project 5 153567826 153598240 + MGP_CASTEiJ_P0076192 Uspl1 protein_coding protein_coding MGP_CASTEiJ_T0076193.1 MGP_CASTEiJ_G0029498.1 mouse_genomes_project 5 153567891 153577215 + Uspl1 protein_coding processed_transcript MGP_CASTEiJ_T0076194.1 MGP_CASTEiJ_G0029498.1 mouse_genomes_project 5 153569364 153572122 + Uspl1 protein_coding retained_intron MGP_CASTEiJ_T0076195.1 MGP_CASTEiJ_G0029498.1 mouse_genomes_project 5 153571976 153573258 + Uspl1 protein_coding retained_intron MGP_CASTEiJ_T0076196.1 MGP_CASTEiJ_G0029498.1 mouse_genomes_project 5 153574458 153598241 + Uspl1 protein_coding retained_intron MGP_CASTEiJ_T0073221.1 MGP_CASTEiJ_G0028944.1 mouse_genomes_project 5 107411331 107469679 - MGP_CASTEiJ_P0073221 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073222.1 MGP_CASTEiJ_G0028944.1 mouse_genomes_project 5 107411333 107503592 - MGP_CASTEiJ_P0073222 protein_coding protein_coding MGP_CASTEiJ_T0073223.1 MGP_CASTEiJ_G0028944.1 mouse_genomes_project 5 107411336 107502585 - MGP_CASTEiJ_P0073223 protein_coding protein_coding MGP_CASTEiJ_T0073224.1 MGP_CASTEiJ_G0028944.1 mouse_genomes_project 5 107412701 107464323 - MGP_CASTEiJ_P0073224 protein_coding protein_coding MGP_CASTEiJ_T0073225.1 MGP_CASTEiJ_G0028944.1 mouse_genomes_project 5 107476761 107501647 - protein_coding retained_intron MGP_CASTEiJ_T0073226.1 MGP_CASTEiJ_G0028944.1 mouse_genomes_project 5 107476761 107502585 - MGP_CASTEiJ_P0073226 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073227.1 MGP_CASTEiJ_G0028944.1 mouse_genomes_project 5 107478055 107502547 - MGP_CASTEiJ_P0073227 protein_coding protein_coding MGP_CASTEiJ_T0075718.1 MGP_CASTEiJ_G0029399.1 mouse_genomes_project 5 143761142 143764776 - MGP_CASTEiJ_P0075718 Mrm2 protein_coding protein_coding MGP_CASTEiJ_T0098980.1 MGP_CASTEiJ_G0035903.1 mouse_genomes_project 5 146719198 146719785 - Gm43378 sense_intronic sense_intronic MGP_CASTEiJ_T0008198.1 MGP_CASTEiJ_G0006664.1 mouse_genomes_project 5 135245411 135246571 + Gm28616 lincRNA lincRNA MGP_CASTEiJ_T0070453.1 MGP_CASTEiJ_G0028421.1 mouse_genomes_project 5 18000800 18078431 - MGP_CASTEiJ_P0070453 Ptpn12 protein_coding protein_coding MGP_CASTEiJ_T0070454.1 MGP_CASTEiJ_G0028421.1 mouse_genomes_project 5 18000801 18003417 - Ptpn12 protein_coding retained_intron MGP_CASTEiJ_T0070455.1 MGP_CASTEiJ_G0028421.1 mouse_genomes_project 5 18001310 18078295 - MGP_CASTEiJ_P0070455 Ptpn12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070456.1 MGP_CASTEiJ_G0028421.1 mouse_genomes_project 5 18012084 18016288 - Ptpn12 protein_coding retained_intron MGP_CASTEiJ_T0070457.1 MGP_CASTEiJ_G0028421.1 mouse_genomes_project 5 18012258 18029482 - Ptpn12 protein_coding retained_intron MGP_CASTEiJ_T0070458.1 MGP_CASTEiJ_G0028421.1 mouse_genomes_project 5 18016164 18078273 - MGP_CASTEiJ_P0070458 Ptpn12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070459.1 MGP_CASTEiJ_G0028421.1 mouse_genomes_project 5 18020237 18078417 - MGP_CASTEiJ_P0070459 Ptpn12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070460.1 MGP_CASTEiJ_G0028421.1 mouse_genomes_project 5 18029319 18078245 - MGP_CASTEiJ_P0070460 Ptpn12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070692.1 MGP_CASTEiJ_G0028465.1 mouse_genomes_project 5 21963479 22005575 - MGP_CASTEiJ_P0070692 Rheb protein_coding protein_coding MGP_CASTEiJ_T0070693.1 MGP_CASTEiJ_G0028465.1 mouse_genomes_project 5 21964323 21975741 - Rheb protein_coding retained_intron MGP_CASTEiJ_T0070694.1 MGP_CASTEiJ_G0028465.1 mouse_genomes_project 5 21970713 22005379 - Rheb protein_coding retained_intron MGP_CASTEiJ_T0070695.1 MGP_CASTEiJ_G0028465.1 mouse_genomes_project 5 22002980 22005560 - Rheb protein_coding retained_intron MGP_CASTEiJ_T0014402.1 MGP_CASTEiJ_G0012565.1 mouse_genomes_project 5 22650655 22651257 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075190.1 MGP_CASTEiJ_G0029297.1 mouse_genomes_project 5 138824782 138852043 - MGP_CASTEiJ_P0075190 Ywhag protein_coding protein_coding MGP_CASTEiJ_T0075191.1 MGP_CASTEiJ_G0029297.1 mouse_genomes_project 5 138824782 138851998 - MGP_CASTEiJ_P0075191 Ywhag protein_coding protein_coding MGP_CASTEiJ_T0075192.1 MGP_CASTEiJ_G0029297.1 mouse_genomes_project 5 138846743 138852041 - Ywhag protein_coding retained_intron MGP_CASTEiJ_T0075193.1 MGP_CASTEiJ_G0029297.1 mouse_genomes_project 5 138846748 138852060 - Ywhag protein_coding processed_transcript MGP_CASTEiJ_T0075194.1 MGP_CASTEiJ_G0029297.1 mouse_genomes_project 5 138846824 138851994 - Ywhag protein_coding processed_transcript MGP_CASTEiJ_T0072388.1 MGP_CASTEiJ_G0028745.1 mouse_genomes_project 5 74273467 74308697 + MGP_CASTEiJ_P0072388 Pdgfra protein_coding protein_coding MGP_CASTEiJ_T0072389.1 MGP_CASTEiJ_G0028745.1 mouse_genomes_project 5 74273481 74324456 + MGP_CASTEiJ_P0072389 Pdgfra protein_coding protein_coding MGP_CASTEiJ_T0072390.1 MGP_CASTEiJ_G0028745.1 mouse_genomes_project 5 74273527 74300235 + MGP_CASTEiJ_P0072390 Pdgfra protein_coding non_stop_decay MGP_CASTEiJ_T0072391.1 MGP_CASTEiJ_G0028745.1 mouse_genomes_project 5 74275351 74309313 + MGP_CASTEiJ_P0072391 Pdgfra protein_coding protein_coding MGP_CASTEiJ_T0072392.1 MGP_CASTEiJ_G0028745.1 mouse_genomes_project 5 74276002 74286235 + Pdgfra protein_coding retained_intron MGP_CASTEiJ_T0072393.1 MGP_CASTEiJ_G0028745.1 mouse_genomes_project 5 74277496 74287263 + MGP_CASTEiJ_P0072393 Pdgfra protein_coding protein_coding MGP_CASTEiJ_T0072394.1 MGP_CASTEiJ_G0028745.1 mouse_genomes_project 5 74278257 74324442 + MGP_CASTEiJ_P0072394 Pdgfra protein_coding protein_coding MGP_CASTEiJ_T0072395.1 MGP_CASTEiJ_G0028745.1 mouse_genomes_project 5 74279187 74289989 + MGP_CASTEiJ_P0072395 Pdgfra protein_coding protein_coding MGP_CASTEiJ_T0072396.1 MGP_CASTEiJ_G0028745.1 mouse_genomes_project 5 74285355 74291487 + MGP_CASTEiJ_P0072396 Pdgfra protein_coding protein_coding MGP_CASTEiJ_T0072184.1 MGP_CASTEiJ_G0028706.1 mouse_genomes_project 5 66784324 66803472 - MGP_CASTEiJ_P0072184 Gm21905 protein_coding protein_coding MGP_CASTEiJ_T0008024.1 MGP_CASTEiJ_G0006556.1 mouse_genomes_project 5 100342170 100355267 - 5430416N02Rik lincRNA lincRNA MGP_CASTEiJ_T0008025.1 MGP_CASTEiJ_G0006556.1 mouse_genomes_project 5 100354459 100355107 - 5430416N02Rik lincRNA lincRNA MGP_CASTEiJ_T0008026.1 MGP_CASTEiJ_G0006556.1 mouse_genomes_project 5 100354726 100355247 - 5430416N02Rik lincRNA lincRNA MGP_CASTEiJ_T0001820.1 MGP_CASTEiJ_G0001741.1 mouse_genomes_project 5 139477101 139484529 - TEC TEC MGP_CASTEiJ_T0001518.1 MGP_CASTEiJ_G0001443.1 mouse_genomes_project 5 47009830 47011478 - TEC TEC MGP_CASTEiJ_T0004706.1 MGP_CASTEiJ_G0004061.1 mouse_genomes_project 5 129567197 129585657 - Tmem132cos antisense antisense MGP_CASTEiJ_T0004707.1 MGP_CASTEiJ_G0004061.1 mouse_genomes_project 5 129567213 129585617 - Tmem132cos antisense antisense MGP_CASTEiJ_T0004708.1 MGP_CASTEiJ_G0004061.1 mouse_genomes_project 5 129567275 129585620 - Tmem132cos antisense antisense MGP_CASTEiJ_T0008185.1 MGP_CASTEiJ_G0006658.1 mouse_genomes_project 5 130827821 130832782 + Gm42495 lincRNA lincRNA MGP_CASTEiJ_T0073798.1 MGP_CASTEiJ_G0029053.1 mouse_genomes_project 5 116036804 116072967 + MGP_CASTEiJ_P0073798 4930519G04Rik protein_coding protein_coding MGP_CASTEiJ_T0073800.1 MGP_CASTEiJ_G0029053.1 mouse_genomes_project 5 116045842 116065418 + 4930519G04Rik protein_coding retained_intron MGP_CASTEiJ_T0073801.1 MGP_CASTEiJ_G0029053.1 mouse_genomes_project 5 116051953 116068503 + MGP_CASTEiJ_P0073801 4930519G04Rik protein_coding protein_coding MGP_CASTEiJ_T0073802.1 MGP_CASTEiJ_G0029053.1 mouse_genomes_project 5 116053977 116068503 + MGP_CASTEiJ_P0073802 4930519G04Rik protein_coding protein_coding MGP_CASTEiJ_T0004528.1 MGP_CASTEiJ_G0003929.1 mouse_genomes_project 5 29335190 29340071 - Gm17130 antisense antisense MGP_CASTEiJ_T0076105.1 MGP_CASTEiJ_G0029487.1 mouse_genomes_project 5 151527844 151609035 - MGP_CASTEiJ_P0076105 Flt3 protein_coding protein_coding MGP_CASTEiJ_T0076106.1 MGP_CASTEiJ_G0029487.1 mouse_genomes_project 5 151564466 151609035 - Flt3 protein_coding processed_transcript MGP_CASTEiJ_T0099920.1 MGP_CASTEiJ_G0036833.1 mouse_genomes_project 5 125451740 125451907 + Gm23458 snRNA snRNA MGP_CASTEiJ_T0014552.1 MGP_CASTEiJ_G0012715.1 mouse_genomes_project 5 88884013 88885643 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014675.1 MGP_CASTEiJ_G0012838.1 mouse_genomes_project 5 148830719 148831169 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014369.1 MGP_CASTEiJ_G0012532.1 mouse_genomes_project 5 13837328 13837581 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070194.1 MGP_CASTEiJ_G0028381.1 mouse_genomes_project 5 847447 874765 + Akap9 protein_coding retained_intron MGP_CASTEiJ_T0070195.1 MGP_CASTEiJ_G0028381.1 mouse_genomes_project 5 847571 880980 + MGP_CASTEiJ_P0070195 Akap9 protein_coding protein_coding MGP_CASTEiJ_T0070196.1 MGP_CASTEiJ_G0028381.1 mouse_genomes_project 5 847660 1011831 + MGP_CASTEiJ_P0070196 Akap9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070197.1 MGP_CASTEiJ_G0028381.1 mouse_genomes_project 5 847667 868808 + Akap9 protein_coding retained_intron MGP_CASTEiJ_T0070198.1 MGP_CASTEiJ_G0028381.1 mouse_genomes_project 5 847667 1012735 + MGP_CASTEiJ_P0070198 Akap9 protein_coding protein_coding MGP_CASTEiJ_T0070199.1 MGP_CASTEiJ_G0028381.1 mouse_genomes_project 5 871264 877659 + Akap9 protein_coding processed_transcript MGP_CASTEiJ_T0070200.1 MGP_CASTEiJ_G0028381.1 mouse_genomes_project 5 871275 871859 + Akap9 protein_coding retained_intron MGP_CASTEiJ_T0070201.1 MGP_CASTEiJ_G0028381.1 mouse_genomes_project 5 874714 877715 + Akap9 protein_coding retained_intron MGP_CASTEiJ_T0070202.1 MGP_CASTEiJ_G0028381.1 mouse_genomes_project 5 895772 896687 + MGP_CASTEiJ_P0070202 Akap9 protein_coding protein_coding MGP_CASTEiJ_T0070203.1 MGP_CASTEiJ_G0028381.1 mouse_genomes_project 5 956726 958849 + Akap9 protein_coding retained_intron MGP_CASTEiJ_T0070204.1 MGP_CASTEiJ_G0028381.1 mouse_genomes_project 5 988152 989825 + Akap9 protein_coding retained_intron MGP_CASTEiJ_T0070205.1 MGP_CASTEiJ_G0028381.1 mouse_genomes_project 5 993229 994232 + MGP_CASTEiJ_P0070205 Akap9 protein_coding protein_coding MGP_CASTEiJ_T0070206.1 MGP_CASTEiJ_G0028381.1 mouse_genomes_project 5 993351 993830 + Akap9 protein_coding retained_intron MGP_CASTEiJ_T0070207.1 MGP_CASTEiJ_G0028381.1 mouse_genomes_project 5 994151 1001990 + MGP_CASTEiJ_P0070207 Akap9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070208.1 MGP_CASTEiJ_G0028381.1 mouse_genomes_project 5 996217 996721 + Akap9 protein_coding retained_intron MGP_CASTEiJ_T0001689.1 MGP_CASTEiJ_G0001612.1 mouse_genomes_project 5 108505043 108506209 + TEC TEC MGP_CASTEiJ_T0007978.1 MGP_CASTEiJ_G0006518.1 mouse_genomes_project 5 76400796 76407054 - Gm15831 lincRNA lincRNA MGP_CASTEiJ_T0014410.1 MGP_CASTEiJ_G0012573.1 mouse_genomes_project 5 24008855 24008990 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071925.1 MGP_CASTEiJ_G0028666.1 mouse_genomes_project 5 55981500 56425407 + MGP_CASTEiJ_P0071925 Pcdh7 protein_coding protein_coding MGP_CASTEiJ_T0071926.1 MGP_CASTEiJ_G0028666.1 mouse_genomes_project 5 55981553 55992976 + MGP_CASTEiJ_P0071926 Pcdh7 protein_coding protein_coding MGP_CASTEiJ_T0071927.1 MGP_CASTEiJ_G0028666.1 mouse_genomes_project 5 55982629 56421515 + MGP_CASTEiJ_P0071927 Pcdh7 protein_coding protein_coding MGP_CASTEiJ_T0071928.1 MGP_CASTEiJ_G0028666.1 mouse_genomes_project 5 55983655 56191885 + MGP_CASTEiJ_P0071928 Pcdh7 protein_coding protein_coding MGP_CASTEiJ_T0071929.1 MGP_CASTEiJ_G0028666.1 mouse_genomes_project 5 55984694 56421961 + MGP_CASTEiJ_P0071929 Pcdh7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071930.1 MGP_CASTEiJ_G0028666.1 mouse_genomes_project 5 55985445 56189613 + MGP_CASTEiJ_P0071930 Pcdh7 protein_coding protein_coding MGP_CASTEiJ_T0071931.1 MGP_CASTEiJ_G0028666.1 mouse_genomes_project 5 55985741 56421618 + MGP_CASTEiJ_P0071931 Pcdh7 protein_coding protein_coding MGP_CASTEiJ_T0074036.1 MGP_CASTEiJ_G0029098.1 mouse_genomes_project 5 119668365 119689280 + Hrk protein_coding processed_transcript MGP_CASTEiJ_T0074037.1 MGP_CASTEiJ_G0029098.1 mouse_genomes_project 5 119673360 119693918 + MGP_CASTEiJ_P0074037 Hrk protein_coding protein_coding MGP_CASTEiJ_T0001628.1 MGP_CASTEiJ_G0001551.1 mouse_genomes_project 5 72314945 72316070 + TEC TEC MGP_CASTEiJ_T0010440.1 MGP_CASTEiJ_G0008628.1 mouse_genomes_project 5 146841037 146841163 + Gm44405 miRNA miRNA MGP_CASTEiJ_T0008214.1 MGP_CASTEiJ_G0006677.1 mouse_genomes_project 5 140738073 140743597 - Gm15498 lincRNA lincRNA MGP_CASTEiJ_T0073334.1 MGP_CASTEiJ_G0028966.1 mouse_genomes_project 5 109059129 109106680 + MGP_CASTEiJ_P0073334 Pde6b protein_coding protein_coding MGP_CASTEiJ_T0073335.1 MGP_CASTEiJ_G0028966.1 mouse_genomes_project 5 109059164 109106604 + Pde6b protein_coding retained_intron MGP_CASTEiJ_T0073336.1 MGP_CASTEiJ_G0028966.1 mouse_genomes_project 5 109105315 109107334 + Pde6b protein_coding retained_intron MGP_CASTEiJ_T0102349.1 MGP_CASTEiJ_G0039074.1 mouse_genomes_project 5 87053597 87063804 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0001755.1 MGP_CASTEiJ_G0001678.1 mouse_genomes_project 5 125658100 125658554 - TEC TEC MGP_CASTEiJ_T0070556.1 MGP_CASTEiJ_G0028440.1 mouse_genomes_project 5 20810121 20861342 - MGP_CASTEiJ_P0070556 Pus7 protein_coding protein_coding MGP_CASTEiJ_T0070557.1 MGP_CASTEiJ_G0028440.1 mouse_genomes_project 5 20810122 20861184 - MGP_CASTEiJ_P0070557 Pus7 protein_coding protein_coding MGP_CASTEiJ_T0070558.1 MGP_CASTEiJ_G0028440.1 mouse_genomes_project 5 20810129 20857100 - MGP_CASTEiJ_P0070558 Pus7 protein_coding protein_coding MGP_CASTEiJ_T0070559.1 MGP_CASTEiJ_G0028440.1 mouse_genomes_project 5 20812471 20861159 - MGP_CASTEiJ_P0070559 Pus7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070560.1 MGP_CASTEiJ_G0028440.1 mouse_genomes_project 5 20813126 20820930 - Pus7 protein_coding processed_transcript MGP_CASTEiJ_T0070561.1 MGP_CASTEiJ_G0028440.1 mouse_genomes_project 5 20814234 20835162 - MGP_CASTEiJ_P0070561 Pus7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070562.1 MGP_CASTEiJ_G0028440.1 mouse_genomes_project 5 20820195 20835199 - Pus7 protein_coding processed_transcript MGP_CASTEiJ_T0070563.1 MGP_CASTEiJ_G0028440.1 mouse_genomes_project 5 20821492 20826858 - Pus7 protein_coding processed_transcript MGP_CASTEiJ_T0070564.1 MGP_CASTEiJ_G0028440.1 mouse_genomes_project 5 20832544 20854285 - MGP_CASTEiJ_P0070564 Pus7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070565.1 MGP_CASTEiJ_G0028440.1 mouse_genomes_project 5 20848440 20851565 - Pus7 protein_coding retained_intron MGP_CASTEiJ_T0001783.1 MGP_CASTEiJ_G0001705.1 mouse_genomes_project 5 133486085 133488016 - TEC TEC MGP_CASTEiJ_T0070752.1 MGP_CASTEiJ_G0028478.1 mouse_genomes_project 5 25369276 25375590 + MGP_CASTEiJ_P0070752 En2 protein_coding protein_coding MGP_CASTEiJ_T0010413.1 MGP_CASTEiJ_G0008601.1 mouse_genomes_project 5 124073387 124073478 + Mir92-2 miRNA miRNA MGP_CASTEiJ_T0010441.1 MGP_CASTEiJ_G0008629.1 mouse_genomes_project 5 148692144 148692230 - Mir7039 miRNA miRNA MGP_CASTEiJ_T0073455.1 MGP_CASTEiJ_G0028989.1 mouse_genomes_project 5 111099953 111157432 + MGP_CASTEiJ_P0073455 Pole protein_coding protein_coding MGP_CASTEiJ_T0073456.1 MGP_CASTEiJ_G0028989.1 mouse_genomes_project 5 111099988 111104682 + MGP_CASTEiJ_P0073456 Pole protein_coding protein_coding MGP_CASTEiJ_T0073457.1 MGP_CASTEiJ_G0028989.1 mouse_genomes_project 5 111100024 111124868 + Pole protein_coding retained_intron MGP_CASTEiJ_T0073458.1 MGP_CASTEiJ_G0028989.1 mouse_genomes_project 5 111136930 111139066 + Pole protein_coding retained_intron MGP_CASTEiJ_T0073459.1 MGP_CASTEiJ_G0028989.1 mouse_genomes_project 5 111147593 111157409 + Pole protein_coding retained_intron MGP_CASTEiJ_T0073460.1 MGP_CASTEiJ_G0028989.1 mouse_genomes_project 5 111150675 111157411 + MGP_CASTEiJ_P0073460 Pole protein_coding protein_coding MGP_CASTEiJ_T0073461.1 MGP_CASTEiJ_G0028989.1 mouse_genomes_project 5 111153398 111157394 + Pole protein_coding retained_intron MGP_CASTEiJ_T0004565.1 MGP_CASTEiJ_G0003958.1 mouse_genomes_project 5 51112365 51113849 - Gm17182 antisense antisense MGP_CASTEiJ_T0070471.1 MGP_CASTEiJ_G0028423.1 mouse_genomes_project 5 18305387 18443345 - MGP_CASTEiJ_P0070471 Ccdc146 protein_coding protein_coding MGP_CASTEiJ_T0070472.1 MGP_CASTEiJ_G0028423.1 mouse_genomes_project 5 18334719 18443345 - MGP_CASTEiJ_P0070472 Ccdc146 protein_coding protein_coding MGP_CASTEiJ_T0070473.1 MGP_CASTEiJ_G0028423.1 mouse_genomes_project 5 18335001 18351063 - Ccdc146 protein_coding retained_intron MGP_CASTEiJ_T0070474.1 MGP_CASTEiJ_G0028423.1 mouse_genomes_project 5 18335921 18340711 - Ccdc146 protein_coding retained_intron MGP_CASTEiJ_T0070475.1 MGP_CASTEiJ_G0028423.1 mouse_genomes_project 5 18340764 18351277 - Ccdc146 protein_coding processed_transcript MGP_CASTEiJ_T0070651.1 MGP_CASTEiJ_G0028455.1 mouse_genomes_project 5 21574565 21631038 + MGP_CASTEiJ_P0070651 Agap3 protein_coding protein_coding MGP_CASTEiJ_T0070652.1 MGP_CASTEiJ_G0028455.1 mouse_genomes_project 5 21574595 21612167 + MGP_CASTEiJ_P0070652 Agap3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070653.1 MGP_CASTEiJ_G0028455.1 mouse_genomes_project 5 21574722 21611303 + Agap3 protein_coding processed_transcript MGP_CASTEiJ_T0070654.1 MGP_CASTEiJ_G0028455.1 mouse_genomes_project 5 21601734 21612159 + MGP_CASTEiJ_P0070654 Agap3 protein_coding protein_coding MGP_CASTEiJ_T0070655.1 MGP_CASTEiJ_G0028455.1 mouse_genomes_project 5 21608833 21631028 + MGP_CASTEiJ_P0070655 Agap3 protein_coding protein_coding MGP_CASTEiJ_T0070656.1 MGP_CASTEiJ_G0028455.1 mouse_genomes_project 5 21609252 21612157 + Agap3 protein_coding processed_transcript MGP_CASTEiJ_T0014535.1 MGP_CASTEiJ_G0012698.1 mouse_genomes_project 5 82965142 82966009 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074283.1 MGP_CASTEiJ_G0029145.1 mouse_genomes_project 5 124163287 124181972 + MGP_CASTEiJ_P0074283 Ppp1cc protein_coding protein_coding MGP_CASTEiJ_T0074284.1 MGP_CASTEiJ_G0029145.1 mouse_genomes_project 5 124163365 124181972 + MGP_CASTEiJ_P0074284 Ppp1cc protein_coding protein_coding MGP_CASTEiJ_T0074285.1 MGP_CASTEiJ_G0029145.1 mouse_genomes_project 5 124163365 124181972 + MGP_CASTEiJ_P0074285 Ppp1cc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074286.1 MGP_CASTEiJ_G0029145.1 mouse_genomes_project 5 124163365 124181968 + MGP_CASTEiJ_P0074286 Ppp1cc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074287.1 MGP_CASTEiJ_G0029145.1 mouse_genomes_project 5 124163599 124181795 + MGP_CASTEiJ_P0074287 Ppp1cc protein_coding protein_coding MGP_CASTEiJ_T0074288.1 MGP_CASTEiJ_G0029145.1 mouse_genomes_project 5 124163963 124174741 + Ppp1cc protein_coding retained_intron MGP_CASTEiJ_T0074289.1 MGP_CASTEiJ_G0029145.1 mouse_genomes_project 5 124173929 124181964 + MGP_CASTEiJ_P0074289 Ppp1cc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074290.1 MGP_CASTEiJ_G0029145.1 mouse_genomes_project 5 124178116 124179327 + Ppp1cc protein_coding retained_intron MGP_CASTEiJ_T0074291.1 MGP_CASTEiJ_G0029145.1 mouse_genomes_project 5 124178390 124181964 + MGP_CASTEiJ_P0074291 Ppp1cc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074292.1 MGP_CASTEiJ_G0029145.1 mouse_genomes_project 5 124179198 124181168 + MGP_CASTEiJ_P0074292 Ppp1cc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072781.1 MGP_CASTEiJ_G0028846.1 mouse_genomes_project 5 91469943 91519576 - MGP_CASTEiJ_P0072781 Btc protein_coding protein_coding MGP_CASTEiJ_T0072782.1 MGP_CASTEiJ_G0028846.1 mouse_genomes_project 5 91470071 91519404 - Btc protein_coding retained_intron MGP_CASTEiJ_T0072783.1 MGP_CASTEiJ_G0028846.1 mouse_genomes_project 5 91471599 91519442 - MGP_CASTEiJ_P0072783 Btc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072784.1 MGP_CASTEiJ_G0028846.1 mouse_genomes_project 5 91478483 91490886 - Btc protein_coding processed_transcript MGP_CASTEiJ_T0075261.1 MGP_CASTEiJ_G0029310.1 mouse_genomes_project 5 139188883 139301447 - MGP_CASTEiJ_P0075261 Cux1 protein_coding protein_coding MGP_CASTEiJ_T0075262.1 MGP_CASTEiJ_G0029310.1 mouse_genomes_project 5 139188883 139518726 - MGP_CASTEiJ_P0075262 Cux1 protein_coding protein_coding MGP_CASTEiJ_T0075263.1 MGP_CASTEiJ_G0029310.1 mouse_genomes_project 5 139188883 139518710 - MGP_CASTEiJ_P0075263 Cux1 protein_coding protein_coding MGP_CASTEiJ_T0075264.1 MGP_CASTEiJ_G0029310.1 mouse_genomes_project 5 139189255 139518740 - MGP_CASTEiJ_P0075264 Cux1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075265.1 MGP_CASTEiJ_G0029310.1 mouse_genomes_project 5 139191269 139518725 - MGP_CASTEiJ_P0075265 Cux1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075266.1 MGP_CASTEiJ_G0029310.1 mouse_genomes_project 5 139209179 139518907 - MGP_CASTEiJ_P0075266 Cux1 protein_coding protein_coding MGP_CASTEiJ_T0075267.1 MGP_CASTEiJ_G0029310.1 mouse_genomes_project 5 139211135 139518708 - MGP_CASTEiJ_P0075267 Cux1 protein_coding protein_coding MGP_CASTEiJ_T0075268.1 MGP_CASTEiJ_G0029310.1 mouse_genomes_project 5 139217220 139517811 - MGP_CASTEiJ_P0075268 Cux1 protein_coding protein_coding MGP_CASTEiJ_T0075269.1 MGP_CASTEiJ_G0029310.1 mouse_genomes_project 5 139217250 139516892 - MGP_CASTEiJ_P0075269 Cux1 protein_coding protein_coding MGP_CASTEiJ_T0075270.1 MGP_CASTEiJ_G0029310.1 mouse_genomes_project 5 139217257 139246752 - Cux1 protein_coding processed_transcript MGP_CASTEiJ_T0075271.1 MGP_CASTEiJ_G0029310.1 mouse_genomes_project 5 139217555 139518681 - MGP_CASTEiJ_P0075271 Cux1 protein_coding protein_coding MGP_CASTEiJ_T0075272.1 MGP_CASTEiJ_G0029310.1 mouse_genomes_project 5 139257432 139304697 - MGP_CASTEiJ_P0075272 Cux1 protein_coding protein_coding MGP_CASTEiJ_T0075273.1 MGP_CASTEiJ_G0029310.1 mouse_genomes_project 5 139303722 139518714 - Cux1 protein_coding retained_intron MGP_CASTEiJ_T0075274.1 MGP_CASTEiJ_G0029310.1 mouse_genomes_project 5 139426309 139518946 - Cux1 protein_coding retained_intron MGP_CASTEiJ_T0072713.1 MGP_CASTEiJ_G0028825.1 mouse_genomes_project 5 89595756 89655736 + MGP_CASTEiJ_P0072713 Npffr2 protein_coding protein_coding MGP_CASTEiJ_T0072669.1 MGP_CASTEiJ_G0028808.1 mouse_genomes_project 5 87984696 87991768 + MGP_CASTEiJ_P0072669 Smr3a protein_coding protein_coding MGP_CASTEiJ_T0072670.1 MGP_CASTEiJ_G0028808.1 mouse_genomes_project 5 87984700 87991771 + MGP_CASTEiJ_P0072670 Smr3a protein_coding protein_coding MGP_CASTEiJ_T0001566.1 MGP_CASTEiJ_G0001490.1 mouse_genomes_project 5 62796398 62798709 + TEC TEC MGP_CASTEiJ_T0098621.1 MGP_CASTEiJ_G0035552.1 mouse_genomes_project 5 134215507 134215630 + Gm27266 rRNA rRNA MGP_CASTEiJ_T0001546.1 MGP_CASTEiJ_G0001471.1 mouse_genomes_project 5 55987898 55990484 + TEC TEC MGP_CASTEiJ_T0074293.1 MGP_CASTEiJ_G0029146.1 mouse_genomes_project 5 124209288 124237135 + MGP_CASTEiJ_P0074293 Hvcn1 protein_coding protein_coding MGP_CASTEiJ_T0074294.1 MGP_CASTEiJ_G0029146.1 mouse_genomes_project 5 124211966 124247843 + MGP_CASTEiJ_P0074294 Hvcn1 protein_coding protein_coding MGP_CASTEiJ_T0074295.1 MGP_CASTEiJ_G0029146.1 mouse_genomes_project 5 124212046 124242127 + MGP_CASTEiJ_P0074295 Hvcn1 protein_coding protein_coding MGP_CASTEiJ_T0074296.1 MGP_CASTEiJ_G0029146.1 mouse_genomes_project 5 124212250 124241397 + MGP_CASTEiJ_P0074296 Hvcn1 protein_coding protein_coding MGP_CASTEiJ_T0074297.1 MGP_CASTEiJ_G0029146.1 mouse_genomes_project 5 124212271 124247843 + MGP_CASTEiJ_P0074297 Hvcn1 protein_coding protein_coding MGP_CASTEiJ_T0074828.1 MGP_CASTEiJ_G0029233.1 mouse_genomes_project 5 132236027 132270180 + MGP_CASTEiJ_P0074828 Gbas protein_coding protein_coding MGP_CASTEiJ_T0074829.1 MGP_CASTEiJ_G0029233.1 mouse_genomes_project 5 132236063 132270103 + MGP_CASTEiJ_P0074829 Gbas protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074830.1 MGP_CASTEiJ_G0029233.1 mouse_genomes_project 5 132236065 132269228 + MGP_CASTEiJ_P0074830 Gbas protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074831.1 MGP_CASTEiJ_G0029233.1 mouse_genomes_project 5 132264718 132269057 + Gbas protein_coding retained_intron MGP_CASTEiJ_T0074832.1 MGP_CASTEiJ_G0029233.1 mouse_genomes_project 5 132265290 132266930 + Gbas protein_coding processed_transcript MGP_CASTEiJ_T0014530.1 MGP_CASTEiJ_G0012693.1 mouse_genomes_project 5 77906205 77906569 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074742.1 MGP_CASTEiJ_G0029217.1 mouse_genomes_project 5 127740100 127834893 + MGP_CASTEiJ_P0074742 Tmem132b protein_coding protein_coding MGP_CASTEiJ_T0074743.1 MGP_CASTEiJ_G0029217.1 mouse_genomes_project 5 127742167 128004764 + MGP_CASTEiJ_P0074743 Tmem132b protein_coding protein_coding MGP_CASTEiJ_T0074744.1 MGP_CASTEiJ_G0029217.1 mouse_genomes_project 5 127834600 127916238 + Tmem132b protein_coding retained_intron MGP_CASTEiJ_T0073171.1 MGP_CASTEiJ_G0028935.1 mouse_genomes_project 5 105807525 105829334 - MGP_CASTEiJ_P0073171 protein_coding protein_coding MGP_CASTEiJ_T0073172.1 MGP_CASTEiJ_G0028935.1 mouse_genomes_project 5 105807526 105829334 - protein_coding retained_intron MGP_CASTEiJ_T0073176.1 MGP_CASTEiJ_G0028935.1 mouse_genomes_project 5 105810050 105812694 - protein_coding processed_transcript MGP_CASTEiJ_T0072652.1 MGP_CASTEiJ_G0028801.1 mouse_genomes_project 5 87758774 87778311 + MGP_CASTEiJ_P0072652 Csn1s2b protein_coding protein_coding MGP_CASTEiJ_T0072653.1 MGP_CASTEiJ_G0028801.1 mouse_genomes_project 5 87758815 87778300 + MGP_CASTEiJ_P0072653 Csn1s2b protein_coding protein_coding MGP_CASTEiJ_T0072654.1 MGP_CASTEiJ_G0028801.1 mouse_genomes_project 5 87758816 87772213 + MGP_CASTEiJ_P0072654 Csn1s2b protein_coding protein_coding MGP_CASTEiJ_T0072655.1 MGP_CASTEiJ_G0028801.1 mouse_genomes_project 5 87762331 87765388 + Csn1s2b protein_coding retained_intron MGP_CASTEiJ_T0075252.1 MGP_CASTEiJ_G0029308.1 mouse_genomes_project 5 139120534 139141330 - MGP_CASTEiJ_P0075252 Prkrip1 protein_coding protein_coding MGP_CASTEiJ_T0075253.1 MGP_CASTEiJ_G0029308.1 mouse_genomes_project 5 139123630 139141277 - Prkrip1 protein_coding processed_transcript MGP_CASTEiJ_T0075254.1 MGP_CASTEiJ_G0029308.1 mouse_genomes_project 5 139123968 139140185 - MGP_CASTEiJ_P0075254 Prkrip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075255.1 MGP_CASTEiJ_G0029308.1 mouse_genomes_project 5 139123973 139141275 - MGP_CASTEiJ_P0075255 Prkrip1 protein_coding protein_coding MGP_CASTEiJ_T0072337.1 MGP_CASTEiJ_G0028737.1 mouse_genomes_project 5 72670431 72698479 + MGP_CASTEiJ_P0072337 Spata18 protein_coding protein_coding MGP_CASTEiJ_T0072338.1 MGP_CASTEiJ_G0028737.1 mouse_genomes_project 5 72670434 72694395 + MGP_CASTEiJ_P0072338 Spata18 protein_coding non_stop_decay MGP_CASTEiJ_T0072339.1 MGP_CASTEiJ_G0028737.1 mouse_genomes_project 5 72670492 72700694 + MGP_CASTEiJ_P0072339 Spata18 protein_coding unknown_likely_coding MGP_CASTEiJ_T0072340.1 MGP_CASTEiJ_G0028737.1 mouse_genomes_project 5 72676646 72698449 + MGP_CASTEiJ_P0072340 Spata18 protein_coding protein_coding MGP_CASTEiJ_T0072341.1 MGP_CASTEiJ_G0028737.1 mouse_genomes_project 5 72678384 72698451 + MGP_CASTEiJ_P0072341 Spata18 protein_coding protein_coding MGP_CASTEiJ_T0001670.1 MGP_CASTEiJ_G0001593.1 mouse_genomes_project 5 100841230 100843583 + TEC TEC MGP_CASTEiJ_T0101116.1 MGP_CASTEiJ_G0038029.1 mouse_genomes_project 5 59135722 59135845 - Gm23708 snoRNA snoRNA MGP_CASTEiJ_T0074252.1 MGP_CASTEiJ_G0029141.1 mouse_genomes_project 5 123813200 123818849 + MGP_CASTEiJ_P0074252 Fam109a protein_coding protein_coding MGP_CASTEiJ_T0074253.1 MGP_CASTEiJ_G0029141.1 mouse_genomes_project 5 123813211 123818816 + MGP_CASTEiJ_P0074253 Fam109a protein_coding protein_coding MGP_CASTEiJ_T0074254.1 MGP_CASTEiJ_G0029141.1 mouse_genomes_project 5 123813221 123817101 + MGP_CASTEiJ_P0074254 Fam109a protein_coding protein_coding MGP_CASTEiJ_T0001812.1 MGP_CASTEiJ_G0001733.1 mouse_genomes_project 5 137045528 137049366 - TEC TEC MGP_CASTEiJ_T0008109.1 MGP_CASTEiJ_G0006607.1 mouse_genomes_project 5 116578182 116582193 + Gm42903 lincRNA lincRNA MGP_CASTEiJ_T0073262.1 MGP_CASTEiJ_G0028954.1 mouse_genomes_project 5 108177830 108227472 - MGP_CASTEiJ_P0073262 Glmn protein_coding protein_coding MGP_CASTEiJ_T0073263.1 MGP_CASTEiJ_G0028954.1 mouse_genomes_project 5 108177832 108227410 - MGP_CASTEiJ_P0073263 Glmn protein_coding protein_coding MGP_CASTEiJ_T0073264.1 MGP_CASTEiJ_G0028954.1 mouse_genomes_project 5 108177885 108179996 - Glmn protein_coding retained_intron MGP_CASTEiJ_T0073265.1 MGP_CASTEiJ_G0028954.1 mouse_genomes_project 5 108177886 108227683 - MGP_CASTEiJ_P0073265 Glmn protein_coding protein_coding MGP_CASTEiJ_T0073266.1 MGP_CASTEiJ_G0028954.1 mouse_genomes_project 5 108177887 108227377 - MGP_CASTEiJ_P0073266 Glmn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073267.1 MGP_CASTEiJ_G0028954.1 mouse_genomes_project 5 108202933 108227399 - Glmn protein_coding processed_transcript MGP_CASTEiJ_T0073268.1 MGP_CASTEiJ_G0028954.1 mouse_genomes_project 5 108205980 108227472 - Glmn protein_coding processed_transcript MGP_CASTEiJ_T0073269.1 MGP_CASTEiJ_G0028954.1 mouse_genomes_project 5 108206014 108227379 - MGP_CASTEiJ_P0073269 Glmn protein_coding protein_coding MGP_CASTEiJ_T0074792.1 MGP_CASTEiJ_G0029227.1 mouse_genomes_project 5 131553750 131679125 + MGP_CASTEiJ_P0074792 Adgrd1 protein_coding protein_coding MGP_CASTEiJ_T0074793.1 MGP_CASTEiJ_G0029227.1 mouse_genomes_project 5 131553757 131557504 + Adgrd1 protein_coding retained_intron MGP_CASTEiJ_T0074794.1 MGP_CASTEiJ_G0029227.1 mouse_genomes_project 5 131553757 131678207 + MGP_CASTEiJ_P0074794 Adgrd1 protein_coding protein_coding MGP_CASTEiJ_T0014623.1 MGP_CASTEiJ_G0012786.1 mouse_genomes_project 5 118020675 118021332 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071822.1 MGP_CASTEiJ_G0028648.1 mouse_genomes_project 5 46255492 46624516 - Kcnip4 protein_coding processed_transcript MGP_CASTEiJ_T0071823.1 MGP_CASTEiJ_G0028648.1 mouse_genomes_project 5 46255492 46469120 - MGP_CASTEiJ_P0071823 Kcnip4 protein_coding protein_coding MGP_CASTEiJ_T0071824.1 MGP_CASTEiJ_G0028648.1 mouse_genomes_project 5 46255492 47435377 - MGP_CASTEiJ_P0071824 Kcnip4 protein_coding protein_coding MGP_CASTEiJ_T0071825.1 MGP_CASTEiJ_G0028648.1 mouse_genomes_project 5 46255492 46769568 - MGP_CASTEiJ_P0071825 Kcnip4 protein_coding protein_coding MGP_CASTEiJ_T0071826.1 MGP_CASTEiJ_G0028648.1 mouse_genomes_project 5 46255493 46363353 - Kcnip4 protein_coding processed_transcript MGP_CASTEiJ_T0071827.1 MGP_CASTEiJ_G0028648.1 mouse_genomes_project 5 46255497 47435234 - MGP_CASTEiJ_P0071827 Kcnip4 protein_coding protein_coding MGP_CASTEiJ_T0071828.1 MGP_CASTEiJ_G0028648.1 mouse_genomes_project 5 46255502 47183454 - MGP_CASTEiJ_P0071828 Kcnip4 protein_coding protein_coding MGP_CASTEiJ_T0071831.1 MGP_CASTEiJ_G0028648.1 mouse_genomes_project 5 46262014 46624516 - Kcnip4 protein_coding processed_transcript MGP_CASTEiJ_T0001598.1 MGP_CASTEiJ_G0001522.1 mouse_genomes_project 5 65489679 65492146 + TEC TEC MGP_CASTEiJ_T0004756.1 MGP_CASTEiJ_G0004096.1 mouse_genomes_project 5 153285563 153287797 - Gm15410 antisense antisense MGP_CASTEiJ_T0072943.1 MGP_CASTEiJ_G0028877.1 mouse_genomes_project 5 96831540 96861994 - MGP_CASTEiJ_P0072943 Paqr3 protein_coding protein_coding MGP_CASTEiJ_T0072944.1 MGP_CASTEiJ_G0028877.1 mouse_genomes_project 5 96836343 96861972 - MGP_CASTEiJ_P0072944 Paqr3 protein_coding protein_coding MGP_CASTEiJ_T0072945.1 MGP_CASTEiJ_G0028877.1 mouse_genomes_project 5 96845306 96847111 - Paqr3 protein_coding retained_intron MGP_CASTEiJ_T0072946.1 MGP_CASTEiJ_G0028877.1 mouse_genomes_project 5 96846883 96860676 - MGP_CASTEiJ_P0072946 Paqr3 protein_coding protein_coding MGP_CASTEiJ_T0072947.1 MGP_CASTEiJ_G0028877.1 mouse_genomes_project 5 96851412 96860737 - MGP_CASTEiJ_P0072947 Paqr3 protein_coding protein_coding MGP_CASTEiJ_T0072948.1 MGP_CASTEiJ_G0028877.1 mouse_genomes_project 5 96853856 96861982 - Paqr3 protein_coding retained_intron MGP_CASTEiJ_T0008159.1 MGP_CASTEiJ_G0006643.1 mouse_genomes_project 5 126255138 126256288 - Gm16001 lincRNA lincRNA MGP_CASTEiJ_T0008160.1 MGP_CASTEiJ_G0006643.1 mouse_genomes_project 5 126255167 126256241 - Gm16001 lincRNA lincRNA MGP_CASTEiJ_T0073165.1 MGP_CASTEiJ_G0028931.1 mouse_genomes_project 5 105525763 105534684 - MGP_CASTEiJ_P0073165 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0073166.1 MGP_CASTEiJ_G0028931.1 mouse_genomes_project 5 105525763 105533638 - MGP_CASTEiJ_P0073166 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0010393.1 MGP_CASTEiJ_G0008581.1 mouse_genomes_project 5 83136375 83136458 + Gm44303 miRNA miRNA MGP_CASTEiJ_T0001413.1 MGP_CASTEiJ_G0001342.1 mouse_genomes_project 5 18051411 18052742 + TEC TEC MGP_CASTEiJ_T0071078.1 MGP_CASTEiJ_G0028531.1 mouse_genomes_project 5 28577939 28581635 - MGP_CASTEiJ_P0071078 Fndc4 protein_coding protein_coding MGP_CASTEiJ_T0071079.1 MGP_CASTEiJ_G0028531.1 mouse_genomes_project 5 28578584 28579401 - MGP_CASTEiJ_P0071079 Fndc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071080.1 MGP_CASTEiJ_G0028531.1 mouse_genomes_project 5 28578584 28581570 - MGP_CASTEiJ_P0071080 Fndc4 protein_coding protein_coding MGP_CASTEiJ_T0071081.1 MGP_CASTEiJ_G0028531.1 mouse_genomes_project 5 28578970 28579654 - Fndc4 protein_coding retained_intron MGP_CASTEiJ_T0071082.1 MGP_CASTEiJ_G0028531.1 mouse_genomes_project 5 28579373 28581120 - MGP_CASTEiJ_P0071082 Fndc4 protein_coding protein_coding MGP_CASTEiJ_T0071083.1 MGP_CASTEiJ_G0028531.1 mouse_genomes_project 5 28579773 28580946 - Fndc4 protein_coding retained_intron MGP_CASTEiJ_T0071084.1 MGP_CASTEiJ_G0028531.1 mouse_genomes_project 5 28580402 28581778 - MGP_CASTEiJ_P0071084 Fndc4 protein_coding protein_coding MGP_CASTEiJ_T0073561.1 MGP_CASTEiJ_G0029008.1 mouse_genomes_project 5 113282790 113294417 + MGP_CASTEiJ_P0073561 Tfip11 protein_coding protein_coding MGP_CASTEiJ_T0073562.1 MGP_CASTEiJ_G0029008.1 mouse_genomes_project 5 113282853 113288311 + MGP_CASTEiJ_P0073562 Tfip11 protein_coding protein_coding MGP_CASTEiJ_T0073563.1 MGP_CASTEiJ_G0029008.1 mouse_genomes_project 5 113282924 113284598 + MGP_CASTEiJ_P0073563 Tfip11 protein_coding protein_coding MGP_CASTEiJ_T0073564.1 MGP_CASTEiJ_G0029008.1 mouse_genomes_project 5 113291990 113293613 + Tfip11 protein_coding retained_intron MGP_CASTEiJ_T0008055.1 MGP_CASTEiJ_G0006578.1 mouse_genomes_project 5 108293136 108316834 - Gm26692 lincRNA lincRNA MGP_CASTEiJ_T0001530.1 MGP_CASTEiJ_G0001455.1 mouse_genomes_project 5 49475821 49479220 - TEC TEC MGP_CASTEiJ_T0075406.1 MGP_CASTEiJ_G0029336.1 mouse_genomes_project 5 140611521 140633764 + MGP_CASTEiJ_P0075406 Tfr2 protein_coding protein_coding MGP_CASTEiJ_T0075407.1 MGP_CASTEiJ_G0029336.1 mouse_genomes_project 5 140611532 140633766 + MGP_CASTEiJ_P0075407 Tfr2 protein_coding protein_coding MGP_CASTEiJ_T0075408.1 MGP_CASTEiJ_G0029336.1 mouse_genomes_project 5 140611545 140613049 + Tfr2 protein_coding retained_intron MGP_CASTEiJ_T0075409.1 MGP_CASTEiJ_G0029336.1 mouse_genomes_project 5 140611550 140633764 + MGP_CASTEiJ_P0075409 Tfr2 protein_coding protein_coding MGP_CASTEiJ_T0075410.1 MGP_CASTEiJ_G0029336.1 mouse_genomes_project 5 140612405 140633750 + MGP_CASTEiJ_P0075410 Tfr2 protein_coding protein_coding MGP_CASTEiJ_T0075411.1 MGP_CASTEiJ_G0029336.1 mouse_genomes_project 5 140612491 140633761 + MGP_CASTEiJ_P0075411 Tfr2 protein_coding protein_coding MGP_CASTEiJ_T0075412.1 MGP_CASTEiJ_G0029336.1 mouse_genomes_project 5 140613137 140615898 + Tfr2 protein_coding retained_intron MGP_CASTEiJ_T0075413.1 MGP_CASTEiJ_G0029336.1 mouse_genomes_project 5 140615990 140620709 + Tfr2 protein_coding retained_intron MGP_CASTEiJ_T0075414.1 MGP_CASTEiJ_G0029336.1 mouse_genomes_project 5 140621834 140623771 + MGP_CASTEiJ_P0075414 Tfr2 protein_coding protein_coding MGP_CASTEiJ_T0075415.1 MGP_CASTEiJ_G0029336.1 mouse_genomes_project 5 140627408 140628234 + Tfr2 protein_coding retained_intron MGP_CASTEiJ_T0075416.1 MGP_CASTEiJ_G0029336.1 mouse_genomes_project 5 140627408 140633274 + Tfr2 protein_coding retained_intron MGP_CASTEiJ_T0071793.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 45813798 46168671 + MGP_CASTEiJ_P0071793 Slit2 protein_coding protein_coding MGP_CASTEiJ_T0071794.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 45813814 45822503 + Slit2 protein_coding retained_intron MGP_CASTEiJ_T0071795.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 45813814 46030357 + Slit2 protein_coding retained_intron MGP_CASTEiJ_T0071796.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 45813814 46166446 + MGP_CASTEiJ_P0071796 Slit2 protein_coding protein_coding MGP_CASTEiJ_T0071797.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 45813814 46165333 + MGP_CASTEiJ_P0071797 Slit2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071798.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 45813814 46166446 + MGP_CASTEiJ_P0071798 Slit2 protein_coding protein_coding MGP_CASTEiJ_T0071799.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 45813814 46166446 + MGP_CASTEiJ_P0071799 Slit2 protein_coding protein_coding MGP_CASTEiJ_T0071800.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 45813818 45923346 + Slit2 protein_coding processed_transcript MGP_CASTEiJ_T0071801.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 45813837 45816331 + Slit2 protein_coding retained_intron MGP_CASTEiJ_T0071802.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 45815655 46020384 + Slit2 protein_coding processed_transcript MGP_CASTEiJ_T0071803.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 45820093 46037580 + MGP_CASTEiJ_P0071803 Slit2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071804.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 46015146 46038780 + Slit2 protein_coding processed_transcript MGP_CASTEiJ_T0071805.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 46021450 46026236 + Slit2 protein_coding retained_intron MGP_CASTEiJ_T0071806.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 46029306 46070096 + Slit2 protein_coding retained_intron MGP_CASTEiJ_T0071807.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 46036492 46082567 + Slit2 protein_coding processed_transcript MGP_CASTEiJ_T0071808.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 46075370 46091749 + Slit2 protein_coding processed_transcript MGP_CASTEiJ_T0071809.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 46083931 46143265 + Slit2 protein_coding retained_intron MGP_CASTEiJ_T0071810.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 46091797 46117344 + MGP_CASTEiJ_P0071810 Slit2 protein_coding protein_coding MGP_CASTEiJ_T0071811.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 46101630 46105810 + Slit2 protein_coding retained_intron MGP_CASTEiJ_T0071812.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 46106374 46120436 + Slit2 protein_coding retained_intron MGP_CASTEiJ_T0071813.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 46114315 46117298 + Slit2 protein_coding retained_intron MGP_CASTEiJ_T0071814.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 46135571 46142107 + Slit2 protein_coding retained_intron MGP_CASTEiJ_T0071815.1 MGP_CASTEiJ_G0028646.1 mouse_genomes_project 5 46142085 46163449 + MGP_CASTEiJ_P0071815 Slit2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001722.1 MGP_CASTEiJ_G0001645.1 mouse_genomes_project 5 118979104 118980068 + TEC TEC MGP_CASTEiJ_T0074095.1 MGP_CASTEiJ_G0029112.1 mouse_genomes_project 5 122337155 122357014 - MGP_CASTEiJ_P0074095 Rita1 protein_coding protein_coding MGP_CASTEiJ_T0074097.1 MGP_CASTEiJ_G0029112.1 mouse_genomes_project 5 122344961 122356312 - MGP_CASTEiJ_P0074097 Rita1 protein_coding protein_coding MGP_CASTEiJ_T0074098.1 MGP_CASTEiJ_G0029112.1 mouse_genomes_project 5 122344962 122348531 - Rita1 protein_coding processed_transcript MGP_CASTEiJ_T0074099.1 MGP_CASTEiJ_G0029112.1 mouse_genomes_project 5 122351730 122357264 - Rita1 protein_coding processed_transcript MGP_CASTEiJ_T0074100.1 MGP_CASTEiJ_G0029112.1 mouse_genomes_project 5 122353747 122357264 - MGP_CASTEiJ_P0074100 Rita1 protein_coding protein_coding MGP_CASTEiJ_T0074101.1 MGP_CASTEiJ_G0029112.1 mouse_genomes_project 5 122353747 122357264 - MGP_CASTEiJ_P0074101 Rita1 protein_coding protein_coding MGP_CASTEiJ_T0074102.1 MGP_CASTEiJ_G0029112.1 mouse_genomes_project 5 122354600 122357245 - MGP_CASTEiJ_P0074102 Rita1 protein_coding protein_coding MGP_CASTEiJ_T0014588.1 MGP_CASTEiJ_G0012751.1 mouse_genomes_project 5 106476575 106477185 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014417.1 MGP_CASTEiJ_G0012580.1 mouse_genomes_project 5 26755155 26755508 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001488.1 MGP_CASTEiJ_G0001414.1 mouse_genomes_project 5 43483610 43484617 - TEC TEC MGP_CASTEiJ_T0075729.1 MGP_CASTEiJ_G0029401.1 mouse_genomes_project 5 143855896 143878900 + MGP_CASTEiJ_P0075729 Eif3b protein_coding protein_coding MGP_CASTEiJ_T0075730.1 MGP_CASTEiJ_G0029401.1 mouse_genomes_project 5 143863679 143867248 + Eif3b protein_coding retained_intron MGP_CASTEiJ_T0075731.1 MGP_CASTEiJ_G0029401.1 mouse_genomes_project 5 143875522 143878238 + MGP_CASTEiJ_P0075731 Eif3b protein_coding protein_coding MGP_CASTEiJ_T0070412.1 MGP_CASTEiJ_G0028412.1 mouse_genomes_project 5 13388561 13408872 + Hgf protein_coding retained_intron MGP_CASTEiJ_T0070413.1 MGP_CASTEiJ_G0028412.1 mouse_genomes_project 5 13388606 13463746 + MGP_CASTEiJ_P0070413 Hgf protein_coding unknown_likely_coding MGP_CASTEiJ_T0070414.1 MGP_CASTEiJ_G0028412.1 mouse_genomes_project 5 13388645 13404459 + Hgf protein_coding retained_intron MGP_CASTEiJ_T0070415.1 MGP_CASTEiJ_G0028412.1 mouse_genomes_project 5 13389511 13405033 + Hgf protein_coding retained_intron MGP_CASTEiJ_T0070416.1 MGP_CASTEiJ_G0028412.1 mouse_genomes_project 5 13389688 13463763 + MGP_CASTEiJ_P0070416 Hgf protein_coding protein_coding MGP_CASTEiJ_T0071690.1 MGP_CASTEiJ_G0028629.1 mouse_genomes_project 5 40930438 40987561 + MGP_CASTEiJ_P0071690 Cpeb2 protein_coding protein_coding MGP_CASTEiJ_T0071691.1 MGP_CASTEiJ_G0028629.1 mouse_genomes_project 5 40930731 40987566 + MGP_CASTEiJ_P0071691 Cpeb2 protein_coding protein_coding MGP_CASTEiJ_T0071692.1 MGP_CASTEiJ_G0028629.1 mouse_genomes_project 5 40931195 40935181 + Cpeb2 protein_coding retained_intron MGP_CASTEiJ_T0071693.1 MGP_CASTEiJ_G0028629.1 mouse_genomes_project 5 40932303 40979167 + MGP_CASTEiJ_P0071693 Cpeb2 protein_coding protein_coding MGP_CASTEiJ_T0071694.1 MGP_CASTEiJ_G0028629.1 mouse_genomes_project 5 40932315 40933151 + Cpeb2 protein_coding processed_transcript MGP_CASTEiJ_T0071695.1 MGP_CASTEiJ_G0028629.1 mouse_genomes_project 5 40934576 40943795 + Cpeb2 protein_coding processed_transcript MGP_CASTEiJ_T0074731.1 MGP_CASTEiJ_G0029214.1 mouse_genomes_project 5 127608208 127628264 - MGP_CASTEiJ_P0074731 Dhx37 protein_coding protein_coding MGP_CASTEiJ_T0074732.1 MGP_CASTEiJ_G0029214.1 mouse_genomes_project 5 127609110 127610220 - MGP_CASTEiJ_P0074732 Dhx37 protein_coding protein_coding MGP_CASTEiJ_T0074733.1 MGP_CASTEiJ_G0029214.1 mouse_genomes_project 5 127610622 127613173 - Dhx37 protein_coding retained_intron MGP_CASTEiJ_T0074734.1 MGP_CASTEiJ_G0029214.1 mouse_genomes_project 5 127617907 127621047 - MGP_CASTEiJ_P0074734 Dhx37 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073828.1 MGP_CASTEiJ_G0029059.1 mouse_genomes_project 5 116207515 116266103 + Sppl3 protein_coding processed_transcript MGP_CASTEiJ_T0073829.1 MGP_CASTEiJ_G0029059.1 mouse_genomes_project 5 116209301 116308053 + MGP_CASTEiJ_P0073829 Sppl3 protein_coding protein_coding MGP_CASTEiJ_T0073830.1 MGP_CASTEiJ_G0029059.1 mouse_genomes_project 5 116209564 116292388 + MGP_CASTEiJ_P0073830 Sppl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073831.1 MGP_CASTEiJ_G0029059.1 mouse_genomes_project 5 116280253 116282755 + Sppl3 protein_coding retained_intron MGP_CASTEiJ_T0073832.1 MGP_CASTEiJ_G0029059.1 mouse_genomes_project 5 116304019 116307519 + Sppl3 protein_coding retained_intron MGP_CASTEiJ_T0014361.1 MGP_CASTEiJ_G0012524.1 mouse_genomes_project 5 7786566 7786821 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014663.1 MGP_CASTEiJ_G0012826.1 mouse_genomes_project 5 143890886 143891361 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001630.1 MGP_CASTEiJ_G0001553.1 mouse_genomes_project 5 73085966 73093062 - TEC TEC MGP_CASTEiJ_T0014555.1 MGP_CASTEiJ_G0012718.1 mouse_genomes_project 5 90227877 90228324 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008085.1 MGP_CASTEiJ_G0006594.1 mouse_genomes_project 5 112871213 112879096 - lincRNA lincRNA MGP_CASTEiJ_T0076065.1 MGP_CASTEiJ_G0029474.1 mouse_genomes_project 5 150437479 150529844 + MGP_CASTEiJ_P0076065 Wasf3 protein_coding protein_coding MGP_CASTEiJ_T0076013.1 MGP_CASTEiJ_G0029461.1 mouse_genomes_project 5 148979289 149001535 - MGP_CASTEiJ_P0076013 Ptcd1 protein_coding protein_coding MGP_CASTEiJ_T0076014.1 MGP_CASTEiJ_G0029461.1 mouse_genomes_project 5 148999867 149001383 - MGP_CASTEiJ_P0076014 Ptcd1 protein_coding protein_coding MGP_CASTEiJ_T0073679.1 MGP_CASTEiJ_G0029031.1 mouse_genomes_project 5 115029073 115093232 - MGP_CASTEiJ_P0073679 Ssh1 protein_coding protein_coding MGP_CASTEiJ_T0073680.1 MGP_CASTEiJ_G0029031.1 mouse_genomes_project 5 115031728 115093117 - MGP_CASTEiJ_P0073680 Ssh1 protein_coding protein_coding MGP_CASTEiJ_T0073681.1 MGP_CASTEiJ_G0029031.1 mouse_genomes_project 5 115034154 115089064 - MGP_CASTEiJ_P0073681 Ssh1 protein_coding protein_coding MGP_CASTEiJ_T0073682.1 MGP_CASTEiJ_G0029031.1 mouse_genomes_project 5 115055833 115093165 - MGP_CASTEiJ_P0073682 Ssh1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073683.1 MGP_CASTEiJ_G0029031.1 mouse_genomes_project 5 115064592 115065750 - MGP_CASTEiJ_P0073683 Ssh1 protein_coding protein_coding MGP_CASTEiJ_T0073684.1 MGP_CASTEiJ_G0029031.1 mouse_genomes_project 5 115065597 115093105 - Ssh1 protein_coding retained_intron MGP_CASTEiJ_T0008181.1 MGP_CASTEiJ_G0006655.1 mouse_genomes_project 5 129471351 129486991 + 4930572K03Rik lincRNA lincRNA MGP_CASTEiJ_T0008182.1 MGP_CASTEiJ_G0006655.1 mouse_genomes_project 5 129471356 129487005 + 4930572K03Rik lincRNA lincRNA MGP_CASTEiJ_T0004748.1 MGP_CASTEiJ_G0004091.1 mouse_genomes_project 5 147105417 147119207 - Gm20635 antisense antisense MGP_CASTEiJ_T0072500.1 MGP_CASTEiJ_G0028763.1 mouse_genomes_project 5 76502813 76508623 - MGP_CASTEiJ_P0072500 Spink2 protein_coding protein_coding MGP_CASTEiJ_T0072501.1 MGP_CASTEiJ_G0028763.1 mouse_genomes_project 5 76502813 76508590 - MGP_CASTEiJ_P0072501 Spink2 protein_coding protein_coding MGP_CASTEiJ_T0072502.1 MGP_CASTEiJ_G0028763.1 mouse_genomes_project 5 76502818 76508357 - MGP_CASTEiJ_P0072502 Spink2 protein_coding protein_coding MGP_CASTEiJ_T0001426.1 MGP_CASTEiJ_G0001354.1 mouse_genomes_project 5 25224154 25228353 - TEC TEC MGP_CASTEiJ_T0072658.1 MGP_CASTEiJ_G0028803.1 mouse_genomes_project 5 87843751 87854908 + MGP_CASTEiJ_P0072658 Odam protein_coding protein_coding MGP_CASTEiJ_T0072659.1 MGP_CASTEiJ_G0028803.1 mouse_genomes_project 5 87844419 87853469 + MGP_CASTEiJ_P0072659 Odam protein_coding protein_coding MGP_CASTEiJ_T0008114.1 MGP_CASTEiJ_G0006611.1 mouse_genomes_project 5 117351745 117354005 - Gm13842 lincRNA lincRNA MGP_CASTEiJ_T0008115.1 MGP_CASTEiJ_G0006611.1 mouse_genomes_project 5 117352184 117354400 - Gm13842 lincRNA lincRNA MGP_CASTEiJ_T0074303.1 MGP_CASTEiJ_G0029148.1 mouse_genomes_project 5 124295450 124332387 + MGP_CASTEiJ_P0074303 Pptc7 protein_coding protein_coding MGP_CASTEiJ_T0070160.1 MGP_CASTEiJ_G0028374.1 mouse_genomes_project 5 517693 525180 - MGP_CASTEiJ_P0070160 Gatad1 protein_coding protein_coding MGP_CASTEiJ_T0070164.1 MGP_CASTEiJ_G0028374.1 mouse_genomes_project 5 525030 531255 - MGP_CASTEiJ_P0070164 Gatad1 protein_coding protein_coding MGP_CASTEiJ_T0070165.1 MGP_CASTEiJ_G0028374.1 mouse_genomes_project 5 526716 531442 - MGP_CASTEiJ_P0070165 Gatad1 protein_coding protein_coding MGP_CASTEiJ_T0072617.1 MGP_CASTEiJ_G0028797.1 mouse_genomes_project 5 87489274 87507312 - MGP_CASTEiJ_P0072617 Sult1e1 protein_coding protein_coding MGP_CASTEiJ_T0014517.1 MGP_CASTEiJ_G0012680.1 mouse_genomes_project 5 72404135 72405023 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001692.1 MGP_CASTEiJ_G0001615.1 mouse_genomes_project 5 109279524 109281607 - TEC TEC MGP_CASTEiJ_T0001707.1 MGP_CASTEiJ_G0001630.1 mouse_genomes_project 5 114360502 114361796 + TEC TEC MGP_CASTEiJ_T0073409.1 MGP_CASTEiJ_G0028982.1 mouse_genomes_project 5 110917412 110918731 - Gtpbp6 protein_coding retained_intron MGP_CASTEiJ_T0073410.1 MGP_CASTEiJ_G0028982.1 mouse_genomes_project 5 110917413 110920591 - Gtpbp6 protein_coding retained_intron MGP_CASTEiJ_T0073411.1 MGP_CASTEiJ_G0028982.1 mouse_genomes_project 5 110917455 110921561 - MGP_CASTEiJ_P0073411 Gtpbp6 protein_coding protein_coding MGP_CASTEiJ_T0073412.1 MGP_CASTEiJ_G0028982.1 mouse_genomes_project 5 110918303 110920565 - Gtpbp6 protein_coding processed_transcript MGP_CASTEiJ_T0073413.1 MGP_CASTEiJ_G0028982.1 mouse_genomes_project 5 110918627 110920805 - MGP_CASTEiJ_P0073413 Gtpbp6 protein_coding protein_coding MGP_CASTEiJ_T0073414.1 MGP_CASTEiJ_G0028982.1 mouse_genomes_project 5 110919186 110920313 - Gtpbp6 protein_coding retained_intron MGP_CASTEiJ_T0073415.1 MGP_CASTEiJ_G0028982.1 mouse_genomes_project 5 110920037 110921530 - Gtpbp6 protein_coding processed_transcript MGP_CASTEiJ_T0073416.1 MGP_CASTEiJ_G0028982.1 mouse_genomes_project 5 110920089 110920997 - Gtpbp6 protein_coding retained_intron MGP_CASTEiJ_T0073417.1 MGP_CASTEiJ_G0028982.1 mouse_genomes_project 5 110920236 110920821 - Gtpbp6 protein_coding retained_intron MGP_CASTEiJ_T0073418.1 MGP_CASTEiJ_G0028982.1 mouse_genomes_project 5 110920424 110921101 - Gtpbp6 protein_coding retained_intron MGP_CASTEiJ_T0073419.1 MGP_CASTEiJ_G0028982.1 mouse_genomes_project 5 110920437 110921551 - Gtpbp6 protein_coding retained_intron MGP_CASTEiJ_T0073934.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117157271 117243650 + Cit protein_coding retained_intron MGP_CASTEiJ_T0073935.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117157273 117187086 + MGP_CASTEiJ_P0073935 Cit protein_coding protein_coding MGP_CASTEiJ_T0073936.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117157274 117187104 + MGP_CASTEiJ_P0073936 Cit protein_coding protein_coding MGP_CASTEiJ_T0073937.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117157637 117243657 + Cit protein_coding retained_intron MGP_CASTEiJ_T0073938.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117157637 117332664 + MGP_CASTEiJ_P0073938 Cit protein_coding protein_coding MGP_CASTEiJ_T0073939.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117157637 117327374 + MGP_CASTEiJ_P0073939 Cit protein_coding protein_coding MGP_CASTEiJ_T0073940.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117158364 117327349 + MGP_CASTEiJ_P0073940 Cit protein_coding protein_coding MGP_CASTEiJ_T0073941.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117158364 117327349 + MGP_CASTEiJ_P0073941 Cit protein_coding protein_coding MGP_CASTEiJ_T0073942.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117158454 117166716 + Cit protein_coding processed_transcript MGP_CASTEiJ_T0073943.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117162959 117174745 + Cit protein_coding retained_intron MGP_CASTEiJ_T0073944.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117202490 117203680 + Cit protein_coding retained_intron MGP_CASTEiJ_T0073945.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117225470 117327349 + MGP_CASTEiJ_P0073945 Cit protein_coding unknown_likely_coding MGP_CASTEiJ_T0073946.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117225640 117243548 + Cit protein_coding retained_intron MGP_CASTEiJ_T0073947.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117243588 117327829 + Cit protein_coding processed_transcript MGP_CASTEiJ_T0073948.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117244030 117327389 + Cit protein_coding processed_transcript MGP_CASTEiJ_T0073949.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117251594 117264910 + Cit protein_coding processed_transcript MGP_CASTEiJ_T0073950.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117263280 117317376 + Cit protein_coding retained_intron MGP_CASTEiJ_T0073951.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117270342 117271892 + Cit protein_coding processed_transcript MGP_CASTEiJ_T0073952.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117287229 117327386 + MGP_CASTEiJ_P0073952 Cit protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073953.1 MGP_CASTEiJ_G0029081.1 mouse_genomes_project 5 117306404 117309999 + Cit protein_coding retained_intron MGP_CASTEiJ_T0074772.1 MGP_CASTEiJ_G0029224.1 mouse_genomes_project 5 131169702 131237624 - MGP_CASTEiJ_P0074772 Rimbp2 protein_coding protein_coding MGP_CASTEiJ_T0074773.1 MGP_CASTEiJ_G0029224.1 mouse_genomes_project 5 131169706 131237577 - MGP_CASTEiJ_P0074773 Rimbp2 protein_coding protein_coding MGP_CASTEiJ_T0074774.1 MGP_CASTEiJ_G0029224.1 mouse_genomes_project 5 131172991 131387393 - MGP_CASTEiJ_P0074774 Rimbp2 protein_coding protein_coding MGP_CASTEiJ_T0074775.1 MGP_CASTEiJ_G0029224.1 mouse_genomes_project 5 131172991 131388457 - MGP_CASTEiJ_P0074775 Rimbp2 protein_coding protein_coding MGP_CASTEiJ_T0074776.1 MGP_CASTEiJ_G0029224.1 mouse_genomes_project 5 131173281 131388577 - MGP_CASTEiJ_P0074776 Rimbp2 protein_coding protein_coding MGP_CASTEiJ_T0074777.1 MGP_CASTEiJ_G0029224.1 mouse_genomes_project 5 131222074 131301434 - MGP_CASTEiJ_P0074777 Rimbp2 protein_coding protein_coding MGP_CASTEiJ_T0074778.1 MGP_CASTEiJ_G0029224.1 mouse_genomes_project 5 131258528 131387371 - Rimbp2 protein_coding processed_transcript MGP_CASTEiJ_T0014537.1 MGP_CASTEiJ_G0012700.1 mouse_genomes_project 5 84633253 84633920 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001428.1 MGP_CASTEiJ_G0001356.1 mouse_genomes_project 5 25763649 25765336 + TEC TEC MGP_CASTEiJ_T0073890.1 MGP_CASTEiJ_G0029074.1 mouse_genomes_project 5 116723745 116732709 + MGP_CASTEiJ_P0073890 Pla2g1b protein_coding protein_coding MGP_CASTEiJ_T0073891.1 MGP_CASTEiJ_G0029074.1 mouse_genomes_project 5 116723749 116732697 + Pla2g1b protein_coding processed_transcript MGP_CASTEiJ_T0073892.1 MGP_CASTEiJ_G0029074.1 mouse_genomes_project 5 116723749 116732723 + MGP_CASTEiJ_P0073892 Pla2g1b protein_coding protein_coding MGP_CASTEiJ_T0073893.1 MGP_CASTEiJ_G0029074.1 mouse_genomes_project 5 116723755 116732562 + MGP_CASTEiJ_P0073893 Pla2g1b protein_coding protein_coding MGP_CASTEiJ_T0073894.1 MGP_CASTEiJ_G0029074.1 mouse_genomes_project 5 116723755 116728644 + MGP_CASTEiJ_P0073894 Pla2g1b protein_coding protein_coding MGP_CASTEiJ_T0073644.1 MGP_CASTEiJ_G0029025.1 mouse_genomes_project 5 114815407 114820685 + MGP_CASTEiJ_P0073644 Ficd protein_coding protein_coding MGP_CASTEiJ_T0001536.1 MGP_CASTEiJ_G0001461.1 mouse_genomes_project 5 50145213 50148093 - TEC TEC MGP_CASTEiJ_T0010394.1 MGP_CASTEiJ_G0008582.1 mouse_genomes_project 5 87512544 87512636 - Mir3969 miRNA miRNA MGP_CASTEiJ_T0007949.1 MGP_CASTEiJ_G0006495.1 mouse_genomes_project 5 63208319 63210228 - Gm42564 lincRNA lincRNA MGP_CASTEiJ_T0001539.1 MGP_CASTEiJ_G0001464.1 mouse_genomes_project 5 50580353 50582777 - TEC TEC MGP_CASTEiJ_T0001732.1 MGP_CASTEiJ_G0001655.1 mouse_genomes_project 5 121234599 121236972 - TEC TEC MGP_CASTEiJ_T0074160.1 MGP_CASTEiJ_G0029127.1 mouse_genomes_project 5 123260583 123261987 - Trafd1 protein_coding retained_intron MGP_CASTEiJ_T0074161.1 MGP_CASTEiJ_G0029127.1 mouse_genomes_project 5 123260583 123275119 - MGP_CASTEiJ_P0074161 Trafd1 protein_coding protein_coding MGP_CASTEiJ_T0074162.1 MGP_CASTEiJ_G0029127.1 mouse_genomes_project 5 123260583 123267248 - MGP_CASTEiJ_P0074162 Trafd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074163.1 MGP_CASTEiJ_G0029127.1 mouse_genomes_project 5 123260588 123275058 - MGP_CASTEiJ_P0074163 Trafd1 protein_coding protein_coding MGP_CASTEiJ_T0074164.1 MGP_CASTEiJ_G0029127.1 mouse_genomes_project 5 123260590 123262330 - MGP_CASTEiJ_P0074164 Trafd1 protein_coding protein_coding MGP_CASTEiJ_T0074165.1 MGP_CASTEiJ_G0029127.1 mouse_genomes_project 5 123267055 123273928 - MGP_CASTEiJ_P0074165 Trafd1 protein_coding protein_coding MGP_CASTEiJ_T0074166.1 MGP_CASTEiJ_G0029127.1 mouse_genomes_project 5 123267301 123275064 - MGP_CASTEiJ_P0074166 Trafd1 protein_coding protein_coding MGP_CASTEiJ_T0074167.1 MGP_CASTEiJ_G0029127.1 mouse_genomes_project 5 123268020 123275116 - MGP_CASTEiJ_P0074167 Trafd1 protein_coding protein_coding MGP_CASTEiJ_T0074168.1 MGP_CASTEiJ_G0029127.1 mouse_genomes_project 5 123272683 123273879 - Trafd1 protein_coding processed_transcript MGP_CASTEiJ_T0008019.1 MGP_CASTEiJ_G0006552.1 mouse_genomes_project 5 99802647 99813251 + lincRNA lincRNA MGP_CASTEiJ_T0004725.1 MGP_CASTEiJ_G0004075.1 mouse_genomes_project 5 138747687 138749553 - Srrm3os antisense antisense MGP_CASTEiJ_T0004501.1 MGP_CASTEiJ_G0003908.1 mouse_genomes_project 5 5734871 5759934 - Gm5106 antisense antisense MGP_CASTEiJ_T0001408.1 MGP_CASTEiJ_G0001337.1 mouse_genomes_project 5 12910932 12913604 + TEC TEC MGP_CASTEiJ_T0007993.1 MGP_CASTEiJ_G0006530.1 mouse_genomes_project 5 90940111 90943689 + Gm43086 lincRNA lincRNA MGP_CASTEiJ_T0001828.1 MGP_CASTEiJ_G0001749.1 mouse_genomes_project 5 144837743 144838424 - TEC TEC MGP_CASTEiJ_T0071875.1 MGP_CASTEiJ_G0028658.1 mouse_genomes_project 5 50889808 50926102 + MGP_CASTEiJ_P0071875 Anapc4 protein_coding protein_coding MGP_CASTEiJ_T0071876.1 MGP_CASTEiJ_G0028658.1 mouse_genomes_project 5 50889922 50925051 + MGP_CASTEiJ_P0071876 Anapc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071877.1 MGP_CASTEiJ_G0028658.1 mouse_genomes_project 5 50900101 50905992 + Anapc4 protein_coding retained_intron MGP_CASTEiJ_T0071878.1 MGP_CASTEiJ_G0028658.1 mouse_genomes_project 5 50900217 50907890 + MGP_CASTEiJ_P0071878 Anapc4 protein_coding protein_coding MGP_CASTEiJ_T0071879.1 MGP_CASTEiJ_G0028658.1 mouse_genomes_project 5 50900230 50907877 + MGP_CASTEiJ_P0071879 Anapc4 protein_coding protein_coding MGP_CASTEiJ_T0071880.1 MGP_CASTEiJ_G0028658.1 mouse_genomes_project 5 50904929 50906067 + Anapc4 protein_coding retained_intron MGP_CASTEiJ_T0071881.1 MGP_CASTEiJ_G0028658.1 mouse_genomes_project 5 50907514 50916182 + Anapc4 protein_coding retained_intron MGP_CASTEiJ_T0071882.1 MGP_CASTEiJ_G0028658.1 mouse_genomes_project 5 50912577 50914011 + Anapc4 protein_coding retained_intron MGP_CASTEiJ_T0071883.1 MGP_CASTEiJ_G0028658.1 mouse_genomes_project 5 50916074 50924305 + Anapc4 protein_coding retained_intron MGP_CASTEiJ_T0071884.1 MGP_CASTEiJ_G0028658.1 mouse_genomes_project 5 50919179 50920824 + Anapc4 protein_coding retained_intron MGP_CASTEiJ_T0071885.1 MGP_CASTEiJ_G0028658.1 mouse_genomes_project 5 50919421 50922964 + Anapc4 protein_coding retained_intron MGP_CASTEiJ_T0071886.1 MGP_CASTEiJ_G0028658.1 mouse_genomes_project 5 50923921 50925043 + Anapc4 protein_coding retained_intron MGP_CASTEiJ_T0001719.1 MGP_CASTEiJ_G0001642.1 mouse_genomes_project 5 117877409 117878734 - TEC TEC MGP_CASTEiJ_T0014645.1 MGP_CASTEiJ_G0012808.1 mouse_genomes_project 5 138579122 138581356 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098390.1 MGP_CASTEiJ_G0035321.1 mouse_genomes_project 5 138801816 138803128 + pseudogene pseudogene MGP_CASTEiJ_T0001676.1 MGP_CASTEiJ_G0001599.1 mouse_genomes_project 5 103394384 103395512 + TEC TEC MGP_CASTEiJ_T0073867.1 MGP_CASTEiJ_G0029067.1 mouse_genomes_project 5 116502189 116519508 + MGP_CASTEiJ_P0073867 Coq5 protein_coding protein_coding MGP_CASTEiJ_T0073868.1 MGP_CASTEiJ_G0029067.1 mouse_genomes_project 5 116502218 116503383 + Coq5 protein_coding retained_intron MGP_CASTEiJ_T0073869.1 MGP_CASTEiJ_G0029067.1 mouse_genomes_project 5 116506176 116518854 + MGP_CASTEiJ_P0073869 Coq5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073533.1 MGP_CASTEiJ_G0029001.1 mouse_genomes_project 5 111734566 112165351 + MGP_CASTEiJ_P0073533 Ttc28 protein_coding protein_coding MGP_CASTEiJ_T0073534.1 MGP_CASTEiJ_G0029001.1 mouse_genomes_project 5 111734566 112165350 + MGP_CASTEiJ_P0073534 Ttc28 protein_coding protein_coding MGP_CASTEiJ_T0073535.1 MGP_CASTEiJ_G0029001.1 mouse_genomes_project 5 111734585 111772439 + Ttc28 protein_coding processed_transcript MGP_CASTEiJ_T0073536.1 MGP_CASTEiJ_G0029001.1 mouse_genomes_project 5 112096415 112101018 + Ttc28 protein_coding retained_intron MGP_CASTEiJ_T0073537.1 MGP_CASTEiJ_G0029001.1 mouse_genomes_project 5 112104809 112110637 + Ttc28 protein_coding processed_transcript MGP_CASTEiJ_T0073538.1 MGP_CASTEiJ_G0029001.1 mouse_genomes_project 5 112107498 112140726 + Ttc28 protein_coding retained_intron MGP_CASTEiJ_T0001615.1 MGP_CASTEiJ_G0001539.1 mouse_genomes_project 5 68128166 68131599 - TEC TEC MGP_CASTEiJ_T0073173.1 MGP_CASTEiJ_G0028936.1 mouse_genomes_project 5 105808279 105830843 - MGP_CASTEiJ_P0073173 protein_coding protein_coding MGP_CASTEiJ_T0071845.1 MGP_CASTEiJ_G0028651.1 mouse_genomes_project 5 50155724 50196892 - MGP_CASTEiJ_P0071845 Dhx15 protein_coding protein_coding MGP_CASTEiJ_T0071846.1 MGP_CASTEiJ_G0028651.1 mouse_genomes_project 5 50156214 50196755 - MGP_CASTEiJ_P0071846 Dhx15 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071847.1 MGP_CASTEiJ_G0028651.1 mouse_genomes_project 5 50158911 50164329 - Dhx15 protein_coding retained_intron MGP_CASTEiJ_T0071848.1 MGP_CASTEiJ_G0028651.1 mouse_genomes_project 5 50159334 50196867 - MGP_CASTEiJ_P0071848 Dhx15 protein_coding protein_coding MGP_CASTEiJ_T0071849.1 MGP_CASTEiJ_G0028651.1 mouse_genomes_project 5 50165185 50168149 - Dhx15 protein_coding retained_intron MGP_CASTEiJ_T0071850.1 MGP_CASTEiJ_G0028651.1 mouse_genomes_project 5 50173271 50196872 - MGP_CASTEiJ_P0071850 Dhx15 protein_coding protein_coding MGP_CASTEiJ_T0071851.1 MGP_CASTEiJ_G0028651.1 mouse_genomes_project 5 50191208 50193813 - Dhx15 protein_coding retained_intron MGP_CASTEiJ_T0070785.1 MGP_CASTEiJ_G0028484.1 mouse_genomes_project 5 26643782 26669108 + MGP_CASTEiJ_P0070785 Nom1 protein_coding protein_coding MGP_CASTEiJ_T0070786.1 MGP_CASTEiJ_G0028484.1 mouse_genomes_project 5 26650339 26655347 + Nom1 protein_coding retained_intron MGP_CASTEiJ_T0070501.1 MGP_CASTEiJ_G0028431.1 mouse_genomes_project 5 18820604 18851517 - MGP_CASTEiJ_P0070501 Dnajc2 protein_coding protein_coding MGP_CASTEiJ_T0070502.1 MGP_CASTEiJ_G0028431.1 mouse_genomes_project 5 18820606 18851385 - MGP_CASTEiJ_P0070502 Dnajc2 protein_coding protein_coding MGP_CASTEiJ_T0070503.1 MGP_CASTEiJ_G0028431.1 mouse_genomes_project 5 18820613 18851503 - Dnajc2 protein_coding retained_intron MGP_CASTEiJ_T0070504.1 MGP_CASTEiJ_G0028431.1 mouse_genomes_project 5 18834907 18836836 - Dnajc2 protein_coding retained_intron MGP_CASTEiJ_T0070505.1 MGP_CASTEiJ_G0028431.1 mouse_genomes_project 5 18841537 18851487 - Dnajc2 protein_coding retained_intron MGP_CASTEiJ_T0070506.1 MGP_CASTEiJ_G0028431.1 mouse_genomes_project 5 18842520 18851518 - MGP_CASTEiJ_P0070506 Dnajc2 protein_coding protein_coding MGP_CASTEiJ_T0014511.1 MGP_CASTEiJ_G0012674.1 mouse_genomes_project 5 69422565 69423179 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072325.1 MGP_CASTEiJ_G0028734.1 mouse_genomes_project 5 72488669 72577065 + MGP_CASTEiJ_P0072325 Dcun1d4 protein_coding protein_coding MGP_CASTEiJ_T0072326.1 MGP_CASTEiJ_G0028734.1 mouse_genomes_project 5 72495296 72573561 + Dcun1d4 protein_coding processed_transcript MGP_CASTEiJ_T0072327.1 MGP_CASTEiJ_G0028734.1 mouse_genomes_project 5 72501866 72577065 + MGP_CASTEiJ_P0072327 Dcun1d4 protein_coding protein_coding MGP_CASTEiJ_T0072328.1 MGP_CASTEiJ_G0028734.1 mouse_genomes_project 5 72501908 72559363 + MGP_CASTEiJ_P0072328 Dcun1d4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072329.1 MGP_CASTEiJ_G0028734.1 mouse_genomes_project 5 72501964 72546965 + MGP_CASTEiJ_P0072329 Dcun1d4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072330.1 MGP_CASTEiJ_G0028734.1 mouse_genomes_project 5 72502008 72577058 + MGP_CASTEiJ_P0072330 Dcun1d4 protein_coding protein_coding MGP_CASTEiJ_T0072331.1 MGP_CASTEiJ_G0028734.1 mouse_genomes_project 5 72506084 72534785 + Dcun1d4 protein_coding processed_transcript MGP_CASTEiJ_T0072332.1 MGP_CASTEiJ_G0028734.1 mouse_genomes_project 5 72523856 72550179 + MGP_CASTEiJ_P0072332 Dcun1d4 protein_coding protein_coding MGP_CASTEiJ_T0070981.1 MGP_CASTEiJ_G0028519.1 mouse_genomes_project 5 28414428 28415195 - MGP_CASTEiJ_P0070981 Ucn protein_coding protein_coding MGP_CASTEiJ_T0070982.1 MGP_CASTEiJ_G0028519.1 mouse_genomes_project 5 28414428 28415195 - MGP_CASTEiJ_P0070982 Ucn protein_coding protein_coding MGP_CASTEiJ_T0014607.1 MGP_CASTEiJ_G0012770.1 mouse_genomes_project 5 110246069 110248023 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001570.1 MGP_CASTEiJ_G0001494.1 mouse_genomes_project 5 63950183 63951370 - TEC TEC MGP_CASTEiJ_T0001635.1 MGP_CASTEiJ_G0001558.1 mouse_genomes_project 5 73447416 73450186 - TEC TEC MGP_CASTEiJ_T0014641.1 MGP_CASTEiJ_G0012804.1 mouse_genomes_project 5 136671929 136672773 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070536.1 MGP_CASTEiJ_G0028437.1 mouse_genomes_project 5 20024936 20025698 - MGP_CASTEiJ_P0070536 Rpl10 protein_coding protein_coding MGP_CASTEiJ_T0014375.1 MGP_CASTEiJ_G0012538.1 mouse_genomes_project 5 17577870 17578176 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0071721.1 MGP_CASTEiJ_G0028635.1 mouse_genomes_project 5 41698038 41701012 - MGP_CASTEiJ_P0071721 Fgfbp1 protein_coding protein_coding MGP_CASTEiJ_T0071722.1 MGP_CASTEiJ_G0028635.1 mouse_genomes_project 5 41698040 41700997 - MGP_CASTEiJ_P0071722 Fgfbp1 protein_coding protein_coding MGP_CASTEiJ_T0071723.1 MGP_CASTEiJ_G0028635.1 mouse_genomes_project 5 41698043 41700251 - MGP_CASTEiJ_P0071723 Fgfbp1 protein_coding protein_coding MGP_CASTEiJ_T0073662.1 MGP_CASTEiJ_G0029029.1 mouse_genomes_project 5 114898776 114899800 - MGP_CASTEiJ_P0073662 Selplg protein_coding protein_coding MGP_CASTEiJ_T0073663.1 MGP_CASTEiJ_G0029029.1 mouse_genomes_project 5 114898787 114912340 - MGP_CASTEiJ_P0073663 Selplg protein_coding protein_coding MGP_CASTEiJ_T0073664.1 MGP_CASTEiJ_G0029029.1 mouse_genomes_project 5 114898795 114899557 - MGP_CASTEiJ_P0073664 Selplg protein_coding protein_coding MGP_CASTEiJ_T0073665.1 MGP_CASTEiJ_G0029029.1 mouse_genomes_project 5 114898795 114899497 - MGP_CASTEiJ_P0073665 Selplg protein_coding protein_coding MGP_CASTEiJ_T0073666.1 MGP_CASTEiJ_G0029029.1 mouse_genomes_project 5 114900285 114914489 - MGP_CASTEiJ_P0073666 Selplg protein_coding protein_coding MGP_CASTEiJ_T0073667.1 MGP_CASTEiJ_G0029029.1 mouse_genomes_project 5 114908189 114912311 - Selplg protein_coding retained_intron MGP_CASTEiJ_T0102365.1 MGP_CASTEiJ_G0039090.1 mouse_genomes_project 5 152734336 152740950 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008176.1 MGP_CASTEiJ_G0006652.1 mouse_genomes_project 5 129097462 129116325 - Gm42953 lincRNA lincRNA MGP_CASTEiJ_T0070956.1 MGP_CASTEiJ_G0028515.1 mouse_genomes_project 5 28329385 28353126 + MGP_CASTEiJ_P0070956 Cad protein_coding protein_coding MGP_CASTEiJ_T0070957.1 MGP_CASTEiJ_G0028515.1 mouse_genomes_project 5 28329416 28342389 + MGP_CASTEiJ_P0070957 Cad protein_coding protein_coding MGP_CASTEiJ_T0070958.1 MGP_CASTEiJ_G0028515.1 mouse_genomes_project 5 28329533 28352874 + MGP_CASTEiJ_P0070958 Cad protein_coding protein_coding MGP_CASTEiJ_T0070959.1 MGP_CASTEiJ_G0028515.1 mouse_genomes_project 5 28329533 28352874 + MGP_CASTEiJ_P0070959 Cad protein_coding protein_coding MGP_CASTEiJ_T0070960.1 MGP_CASTEiJ_G0028515.1 mouse_genomes_project 5 28329560 28352837 + MGP_CASTEiJ_P0070960 Cad protein_coding protein_coding MGP_CASTEiJ_T0070961.1 MGP_CASTEiJ_G0028515.1 mouse_genomes_project 5 28333146 28334437 + Cad protein_coding retained_intron MGP_CASTEiJ_T0070962.1 MGP_CASTEiJ_G0028515.1 mouse_genomes_project 5 28336265 28341595 + Cad protein_coding retained_intron MGP_CASTEiJ_T0070963.1 MGP_CASTEiJ_G0028515.1 mouse_genomes_project 5 28340921 28341806 + Cad protein_coding processed_transcript MGP_CASTEiJ_T0070964.1 MGP_CASTEiJ_G0028515.1 mouse_genomes_project 5 28344981 28346814 + Cad protein_coding processed_transcript MGP_CASTEiJ_T0070965.1 MGP_CASTEiJ_G0028515.1 mouse_genomes_project 5 28345094 28347341 + Cad protein_coding retained_intron MGP_CASTEiJ_T0070966.1 MGP_CASTEiJ_G0028515.1 mouse_genomes_project 5 28345180 28347618 + Cad protein_coding retained_intron MGP_CASTEiJ_T0070967.1 MGP_CASTEiJ_G0028515.1 mouse_genomes_project 5 28346928 28348216 + Cad protein_coding retained_intron MGP_CASTEiJ_T0070968.1 MGP_CASTEiJ_G0028515.1 mouse_genomes_project 5 28348750 28350662 + MGP_CASTEiJ_P0070968 Cad protein_coding protein_coding MGP_CASTEiJ_T0070969.1 MGP_CASTEiJ_G0028515.1 mouse_genomes_project 5 28350446 28351299 + Cad protein_coding retained_intron MGP_CASTEiJ_T0011267.1 MGP_CASTEiJ_G0009455.1 mouse_genomes_project 5 92140220 92140496 + Gm24113 misc_RNA misc_RNA MGP_CASTEiJ_T0014450.1 MGP_CASTEiJ_G0012613.1 mouse_genomes_project 5 39585282 39586174 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007864.1 MGP_CASTEiJ_G0006435.1 mouse_genomes_project 5 22707669 22710142 + 4831440E17Rik lincRNA lincRNA MGP_CASTEiJ_T0071613.1 MGP_CASTEiJ_G0028615.1 mouse_genomes_project 5 35857905 35874431 - Zbtb49 protein_coding processed_transcript MGP_CASTEiJ_T0071614.1 MGP_CASTEiJ_G0028615.1 mouse_genomes_project 5 35868338 35890694 - MGP_CASTEiJ_P0071614 Zbtb49 protein_coding protein_coding MGP_CASTEiJ_T0071615.1 MGP_CASTEiJ_G0028615.1 mouse_genomes_project 5 35868503 35890650 - MGP_CASTEiJ_P0071615 Zbtb49 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071616.1 MGP_CASTEiJ_G0028615.1 mouse_genomes_project 5 35868506 35890662 - MGP_CASTEiJ_P0071616 Zbtb49 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071617.1 MGP_CASTEiJ_G0028615.1 mouse_genomes_project 5 35868898 35890662 - MGP_CASTEiJ_P0071617 Zbtb49 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071618.1 MGP_CASTEiJ_G0028615.1 mouse_genomes_project 5 35868898 35890664 - MGP_CASTEiJ_P0071618 Zbtb49 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071619.1 MGP_CASTEiJ_G0028615.1 mouse_genomes_project 5 35871514 35872064 - MGP_CASTEiJ_P0071619 Zbtb49 protein_coding protein_coding MGP_CASTEiJ_T0071620.1 MGP_CASTEiJ_G0028615.1 mouse_genomes_project 5 35872015 35881820 - MGP_CASTEiJ_P0071620 Zbtb49 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071621.1 MGP_CASTEiJ_G0028615.1 mouse_genomes_project 5 35872071 35890668 - MGP_CASTEiJ_P0071621 Zbtb49 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071622.1 MGP_CASTEiJ_G0028615.1 mouse_genomes_project 5 35880305 35890691 - MGP_CASTEiJ_P0071622 Zbtb49 protein_coding protein_coding MGP_CASTEiJ_T0071623.1 MGP_CASTEiJ_G0028615.1 mouse_genomes_project 5 35883647 35890661 - Zbtb49 protein_coding retained_intron MGP_CASTEiJ_T0014606.1 MGP_CASTEiJ_G0012769.1 mouse_genomes_project 5 110172889 110173473 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075876.1 MGP_CASTEiJ_G0029433.1 mouse_genomes_project 5 147119296 147141014 + MGP_CASTEiJ_P0075876 Kdelr2 protein_coding protein_coding MGP_CASTEiJ_T0001395.1 MGP_CASTEiJ_G0001324.1 mouse_genomes_project 5 10203937 10206462 - TEC TEC MGP_CASTEiJ_T0004563.1 MGP_CASTEiJ_G0003956.1 mouse_genomes_project 5 46460293 46469431 + Gm20700 antisense antisense MGP_CASTEiJ_T0072826.1 MGP_CASTEiJ_G0028856.1 mouse_genomes_project 5 92465523 92495365 - MGP_CASTEiJ_P0072826 Sdad1 protein_coding protein_coding MGP_CASTEiJ_T0072827.1 MGP_CASTEiJ_G0028856.1 mouse_genomes_project 5 92468249 92495331 - MGP_CASTEiJ_P0072827 Sdad1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0072828.1 MGP_CASTEiJ_G0028856.1 mouse_genomes_project 5 92468254 92495235 - MGP_CASTEiJ_P0072828 Sdad1 protein_coding protein_coding MGP_CASTEiJ_T0072829.1 MGP_CASTEiJ_G0028856.1 mouse_genomes_project 5 92476071 92481390 - Sdad1 protein_coding retained_intron MGP_CASTEiJ_T0072830.1 MGP_CASTEiJ_G0028856.1 mouse_genomes_project 5 92476898 92485649 - Sdad1 protein_coding retained_intron MGP_CASTEiJ_T0072831.1 MGP_CASTEiJ_G0028856.1 mouse_genomes_project 5 92486953 92495330 - Sdad1 protein_coding retained_intron MGP_CASTEiJ_T0072832.1 MGP_CASTEiJ_G0028856.1 mouse_genomes_project 5 92488965 92489979 - Sdad1 protein_coding retained_intron MGP_CASTEiJ_T0072833.1 MGP_CASTEiJ_G0028856.1 mouse_genomes_project 5 92491017 92495821 - MGP_CASTEiJ_P0072833 Sdad1 protein_coding protein_coding MGP_CASTEiJ_T0007935.1 MGP_CASTEiJ_G0006485.1 mouse_genomes_project 5 56752914 56755028 + 1700029E06Rik lincRNA lincRNA MGP_CASTEiJ_T0070529.1 MGP_CASTEiJ_G0028435.1 mouse_genomes_project 5 19558938 19620849 - Orc5 protein_coding retained_intron MGP_CASTEiJ_T0070530.1 MGP_CASTEiJ_G0028435.1 mouse_genomes_project 5 19558942 19620923 - MGP_CASTEiJ_P0070530 Orc5 protein_coding protein_coding MGP_CASTEiJ_T0070531.1 MGP_CASTEiJ_G0028435.1 mouse_genomes_project 5 19585429 19590715 - Orc5 protein_coding retained_intron MGP_CASTEiJ_T0070532.1 MGP_CASTEiJ_G0028435.1 mouse_genomes_project 5 19591568 19620064 - MGP_CASTEiJ_P0070532 Orc5 protein_coding protein_coding MGP_CASTEiJ_T0070533.1 MGP_CASTEiJ_G0028435.1 mouse_genomes_project 5 19591603 19620923 - Orc5 protein_coding processed_transcript MGP_CASTEiJ_T0070534.1 MGP_CASTEiJ_G0028435.1 mouse_genomes_project 5 19616942 19620977 - Orc5 protein_coding processed_transcript MGP_CASTEiJ_T0007865.1 MGP_CASTEiJ_G0006436.1 mouse_genomes_project 5 22737209 22738664 + 1700096K18Rik lincRNA lincRNA MGP_CASTEiJ_T0071634.1 MGP_CASTEiJ_G0028617.1 mouse_genomes_project 5 35931703 35944000 + MGP_CASTEiJ_P0071634 Tmem128 protein_coding protein_coding MGP_CASTEiJ_T0071635.1 MGP_CASTEiJ_G0028617.1 mouse_genomes_project 5 35931889 35933821 + Tmem128 protein_coding retained_intron MGP_CASTEiJ_T0071636.1 MGP_CASTEiJ_G0028617.1 mouse_genomes_project 5 35931902 35939453 + MGP_CASTEiJ_P0071636 Tmem128 protein_coding protein_coding MGP_CASTEiJ_T0071637.1 MGP_CASTEiJ_G0028617.1 mouse_genomes_project 5 35931906 35936934 + Tmem128 protein_coding retained_intron MGP_CASTEiJ_T0071638.1 MGP_CASTEiJ_G0028617.1 mouse_genomes_project 5 35936437 35939450 + MGP_CASTEiJ_P0071638 Tmem128 protein_coding protein_coding MGP_CASTEiJ_T0004570.1 MGP_CASTEiJ_G0003963.1 mouse_genomes_project 5 64895813 64922586 + Gm26725 antisense antisense MGP_CASTEiJ_T0070143.1 MGP_CASTEiJ_G0028372.1 mouse_genomes_project 5 467535 481578 - MGP_CASTEiJ_P0070143 Rbm48 protein_coding protein_coding MGP_CASTEiJ_T0070144.1 MGP_CASTEiJ_G0028372.1 mouse_genomes_project 5 468333 481052 - MGP_CASTEiJ_P0070144 Rbm48 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070145.1 MGP_CASTEiJ_G0028372.1 mouse_genomes_project 5 475759 477135 - Rbm48 protein_coding retained_intron MGP_CASTEiJ_T0070146.1 MGP_CASTEiJ_G0028372.1 mouse_genomes_project 5 476474 481075 - Rbm48 protein_coding retained_intron MGP_CASTEiJ_T0070147.1 MGP_CASTEiJ_G0028372.1 mouse_genomes_project 5 477249 481195 - MGP_CASTEiJ_P0070147 Rbm48 protein_coding protein_coding MGP_CASTEiJ_T0001594.1 MGP_CASTEiJ_G0001518.1 mouse_genomes_project 5 65228766 65229395 - TEC TEC MGP_CASTEiJ_T0075172.1 MGP_CASTEiJ_G0029293.1 mouse_genomes_project 5 138639427 138674067 - MGP_CASTEiJ_P0075172 Styxl1 protein_coding protein_coding MGP_CASTEiJ_T0075173.1 MGP_CASTEiJ_G0029293.1 mouse_genomes_project 5 138639457 138666168 - MGP_CASTEiJ_P0075173 Styxl1 protein_coding protein_coding MGP_CASTEiJ_T0075174.1 MGP_CASTEiJ_G0029293.1 mouse_genomes_project 5 138649202 138674141 - MGP_CASTEiJ_P0075174 Styxl1 protein_coding protein_coding MGP_CASTEiJ_T0004516.1 MGP_CASTEiJ_G0003920.1 mouse_genomes_project 5 21854100 21861902 - Gm26648 antisense antisense MGP_CASTEiJ_T0014387.1 MGP_CASTEiJ_G0012550.1 mouse_genomes_project 5 19770406 19771457 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008074.1 MGP_CASTEiJ_G0006589.1 mouse_genomes_project 5 112476119 112482625 + C130026L21Rik lincRNA lincRNA MGP_CASTEiJ_T0008075.1 MGP_CASTEiJ_G0006589.1 mouse_genomes_project 5 112476258 112481833 + C130026L21Rik lincRNA lincRNA MGP_CASTEiJ_T0008076.1 MGP_CASTEiJ_G0006589.1 mouse_genomes_project 5 112476265 112477572 + C130026L21Rik lincRNA lincRNA MGP_CASTEiJ_T0008077.1 MGP_CASTEiJ_G0006589.1 mouse_genomes_project 5 112477129 112502563 + C130026L21Rik lincRNA lincRNA MGP_CASTEiJ_T0073729.1 MGP_CASTEiJ_G0029040.1 mouse_genomes_project 5 115510311 115526985 - MGP_CASTEiJ_P0073729 Kctd10 protein_coding protein_coding MGP_CASTEiJ_T0073730.1 MGP_CASTEiJ_G0029040.1 mouse_genomes_project 5 115511206 115526966 - MGP_CASTEiJ_P0073730 Kctd10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073731.1 MGP_CASTEiJ_G0029040.1 mouse_genomes_project 5 115512244 115526591 - MGP_CASTEiJ_P0073731 Kctd10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073732.1 MGP_CASTEiJ_G0029040.1 mouse_genomes_project 5 115512367 115526960 - MGP_CASTEiJ_P0073732 Kctd10 protein_coding protein_coding MGP_CASTEiJ_T0073733.1 MGP_CASTEiJ_G0029040.1 mouse_genomes_project 5 115512451 115518988 - Kctd10 protein_coding processed_transcript MGP_CASTEiJ_T0073734.1 MGP_CASTEiJ_G0029040.1 mouse_genomes_project 5 115513628 115515393 - Kctd10 protein_coding retained_intron MGP_CASTEiJ_T0073735.1 MGP_CASTEiJ_G0029040.1 mouse_genomes_project 5 115513648 115517059 - Kctd10 protein_coding retained_intron MGP_CASTEiJ_T0073736.1 MGP_CASTEiJ_G0029040.1 mouse_genomes_project 5 115513729 115516107 - Kctd10 protein_coding retained_intron MGP_CASTEiJ_T0098951.1 MGP_CASTEiJ_G0035875.1 mouse_genomes_project 5 1782174 1785275 - Gm43112 sense_intronic sense_intronic MGP_CASTEiJ_T0004757.1 MGP_CASTEiJ_G0004097.1 mouse_genomes_project 5 153678187 153685602 - Gm19719 antisense antisense MGP_CASTEiJ_T0008102.1 MGP_CASTEiJ_G0006604.1 mouse_genomes_project 5 115016253 115018445 - Gm42797 lincRNA lincRNA MGP_CASTEiJ_T0070658.1 MGP_CASTEiJ_G0028457.1 mouse_genomes_project 5 21665008 21672820 - MGP_CASTEiJ_P0070658 Asb10 protein_coding protein_coding MGP_CASTEiJ_T0070659.1 MGP_CASTEiJ_G0028457.1 mouse_genomes_project 5 21665951 21673342 - MGP_CASTEiJ_P0070659 Asb10 protein_coding protein_coding MGP_CASTEiJ_T0070660.1 MGP_CASTEiJ_G0028457.1 mouse_genomes_project 5 21665969 21672955 - MGP_CASTEiJ_P0070660 Asb10 protein_coding protein_coding MGP_CASTEiJ_T0101623.1 MGP_CASTEiJ_G0038480.1 mouse_genomes_project 5 76843283 76843663 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101624.1 MGP_CASTEiJ_G0038480.1 mouse_genomes_project 5 76843299 76843848 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0071098.1 MGP_CASTEiJ_G0028534.1 mouse_genomes_project 5 28757447 28760184 + 4930548H24Rik protein_coding retained_intron MGP_CASTEiJ_T0071099.1 MGP_CASTEiJ_G0028534.1 mouse_genomes_project 5 28757566 28760184 + MGP_CASTEiJ_P0071099 4930548H24Rik protein_coding protein_coding MGP_CASTEiJ_T0001629.1 MGP_CASTEiJ_G0001552.1 mouse_genomes_project 5 72666080 72666656 - TEC TEC MGP_CASTEiJ_T0098986.1 MGP_CASTEiJ_G0035906.1 mouse_genomes_project 5 153843177 153844895 + 4933425D22Rik sense_intronic sense_intronic MGP_CASTEiJ_T0099921.1 MGP_CASTEiJ_G0036834.1 mouse_genomes_project 5 125731202 125731349 + Gm24840 snRNA snRNA MGP_CASTEiJ_T0001605.1 MGP_CASTEiJ_G0001529.1 mouse_genomes_project 5 66492305 66493809 - TEC TEC MGP_CASTEiJ_T0004680.1 MGP_CASTEiJ_G0004042.1 mouse_genomes_project 5 123272532 123284375 + Gm42917 antisense antisense MGP_CASTEiJ_T0001759.1 MGP_CASTEiJ_G0001682.1 mouse_genomes_project 5 126426352 126427962 - TEC TEC MGP_CASTEiJ_T0073119.1 MGP_CASTEiJ_G0028913.1 mouse_genomes_project 5 103756943 103897812 + Aff1 protein_coding retained_intron MGP_CASTEiJ_T0073120.1 MGP_CASTEiJ_G0028913.1 mouse_genomes_project 5 103829573 103936672 + MGP_CASTEiJ_P0073120 Aff1 protein_coding protein_coding MGP_CASTEiJ_T0073121.1 MGP_CASTEiJ_G0028913.1 mouse_genomes_project 5 103832016 103923698 + MGP_CASTEiJ_P0073121 Aff1 protein_coding protein_coding MGP_CASTEiJ_T0073122.1 MGP_CASTEiJ_G0028913.1 mouse_genomes_project 5 103832025 103936672 + MGP_CASTEiJ_P0073122 Aff1 protein_coding protein_coding MGP_CASTEiJ_T0073123.1 MGP_CASTEiJ_G0028913.1 mouse_genomes_project 5 103864132 103892804 + Aff1 protein_coding retained_intron MGP_CASTEiJ_T0074137.1 MGP_CASTEiJ_G0029123.1 mouse_genomes_project 5 122775532 122852178 - MGP_CASTEiJ_P0074137 Rph3a protein_coding unknown_likely_coding MGP_CASTEiJ_T0074138.1 MGP_CASTEiJ_G0029123.1 mouse_genomes_project 5 122775535 122852110 - MGP_CASTEiJ_P0074138 Rph3a protein_coding protein_coding MGP_CASTEiJ_T0074139.1 MGP_CASTEiJ_G0029123.1 mouse_genomes_project 5 122775535 122852655 - MGP_CASTEiJ_P0074139 Rph3a protein_coding protein_coding MGP_CASTEiJ_T0074140.1 MGP_CASTEiJ_G0029123.1 mouse_genomes_project 5 122776854 122851117 - MGP_CASTEiJ_P0074140 Rph3a protein_coding protein_coding MGP_CASTEiJ_T0074141.1 MGP_CASTEiJ_G0029123.1 mouse_genomes_project 5 122809436 122852667 - MGP_CASTEiJ_P0074141 Rph3a protein_coding protein_coding MGP_CASTEiJ_T0071416.1 MGP_CASTEiJ_G0028581.1 mouse_genomes_project 5 32455762 32544888 + MGP_CASTEiJ_P0071416 Rgs12 protein_coding protein_coding MGP_CASTEiJ_T0071417.1 MGP_CASTEiJ_G0028581.1 mouse_genomes_project 5 32455765 32531342 + Rgs12 protein_coding retained_intron MGP_CASTEiJ_T0071418.1 MGP_CASTEiJ_G0028581.1 mouse_genomes_project 5 32474533 32550741 + MGP_CASTEiJ_P0071418 Rgs12 protein_coding protein_coding MGP_CASTEiJ_T0071419.1 MGP_CASTEiJ_G0028581.1 mouse_genomes_project 5 32483585 32485050 + Rgs12 protein_coding processed_transcript MGP_CASTEiJ_T0071420.1 MGP_CASTEiJ_G0028581.1 mouse_genomes_project 5 32484760 32530753 + Rgs12 protein_coding processed_transcript MGP_CASTEiJ_T0071421.1 MGP_CASTEiJ_G0028581.1 mouse_genomes_project 5 32499311 32534467 + MGP_CASTEiJ_P0071421 Rgs12 protein_coding protein_coding MGP_CASTEiJ_T0071422.1 MGP_CASTEiJ_G0028581.1 mouse_genomes_project 5 32499732 32550732 + MGP_CASTEiJ_P0071422 Rgs12 protein_coding protein_coding MGP_CASTEiJ_T0071423.1 MGP_CASTEiJ_G0028581.1 mouse_genomes_project 5 32499998 32544746 + MGP_CASTEiJ_P0071423 Rgs12 protein_coding protein_coding MGP_CASTEiJ_T0071424.1 MGP_CASTEiJ_G0028581.1 mouse_genomes_project 5 32509247 32544884 + MGP_CASTEiJ_P0071424 Rgs12 protein_coding protein_coding MGP_CASTEiJ_T0071425.1 MGP_CASTEiJ_G0028581.1 mouse_genomes_project 5 32509374 32550732 + MGP_CASTEiJ_P0071425 Rgs12 protein_coding protein_coding MGP_CASTEiJ_T0071426.1 MGP_CASTEiJ_G0028581.1 mouse_genomes_project 5 32531362 32533957 + Rgs12 protein_coding retained_intron MGP_CASTEiJ_T0071428.1 MGP_CASTEiJ_G0028581.1 mouse_genomes_project 5 32534125 32535630 + Rgs12 protein_coding retained_intron MGP_CASTEiJ_T0071429.1 MGP_CASTEiJ_G0028581.1 mouse_genomes_project 5 32535634 32541383 + MGP_CASTEiJ_P0071429 Rgs12 protein_coding protein_coding MGP_CASTEiJ_T0071430.1 MGP_CASTEiJ_G0028581.1 mouse_genomes_project 5 32538195 32543345 + Rgs12 protein_coding processed_transcript MGP_CASTEiJ_T0071431.1 MGP_CASTEiJ_G0028581.1 mouse_genomes_project 5 32538262 32550733 + MGP_CASTEiJ_P0071431 Rgs12 protein_coding protein_coding MGP_CASTEiJ_T0073072.1 MGP_CASTEiJ_G0028904.1 mouse_genomes_project 5 100797027 100798125 + MGP_CASTEiJ_P0073072 Agpat9 protein_coding protein_coding MGP_CASTEiJ_T0073073.1 MGP_CASTEiJ_G0028904.1 mouse_genomes_project 5 100797444 100861056 + MGP_CASTEiJ_P0073073 Agpat9 protein_coding protein_coding MGP_CASTEiJ_T0073074.1 MGP_CASTEiJ_G0028904.1 mouse_genomes_project 5 100797533 100861056 + MGP_CASTEiJ_P0073074 Agpat9 protein_coding protein_coding MGP_CASTEiJ_T0073075.1 MGP_CASTEiJ_G0028904.1 mouse_genomes_project 5 100797678 100861059 + MGP_CASTEiJ_P0073075 Agpat9 protein_coding protein_coding MGP_CASTEiJ_T0073076.1 MGP_CASTEiJ_G0028904.1 mouse_genomes_project 5 100797731 100798165 + MGP_CASTEiJ_P0073076 Agpat9 protein_coding protein_coding MGP_CASTEiJ_T0014381.1 MGP_CASTEiJ_G0012544.1 mouse_genomes_project 5 18742157 18742705 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070566.1 MGP_CASTEiJ_G0028441.1 mouse_genomes_project 5 20865312 20867609 + MGP_CASTEiJ_P0070566 Rint1 protein_coding protein_coding MGP_CASTEiJ_T0070567.1 MGP_CASTEiJ_G0028441.1 mouse_genomes_project 5 20865312 20896464 + MGP_CASTEiJ_P0070567 Rint1 protein_coding protein_coding MGP_CASTEiJ_T0070568.1 MGP_CASTEiJ_G0028441.1 mouse_genomes_project 5 20865313 20871764 + MGP_CASTEiJ_P0070568 Rint1 protein_coding protein_coding MGP_CASTEiJ_T0070569.1 MGP_CASTEiJ_G0028441.1 mouse_genomes_project 5 20865316 20896392 + MGP_CASTEiJ_P0070569 Rint1 protein_coding protein_coding MGP_CASTEiJ_T0070570.1 MGP_CASTEiJ_G0028441.1 mouse_genomes_project 5 20865320 20896463 + Rint1 protein_coding retained_intron MGP_CASTEiJ_T0070571.1 MGP_CASTEiJ_G0028441.1 mouse_genomes_project 5 20865322 20867634 + Rint1 protein_coding retained_intron MGP_CASTEiJ_T0070572.1 MGP_CASTEiJ_G0028441.1 mouse_genomes_project 5 20865342 20874895 + Rint1 protein_coding processed_transcript MGP_CASTEiJ_T0070573.1 MGP_CASTEiJ_G0028441.1 mouse_genomes_project 5 20882962 20886324 + Rint1 protein_coding retained_intron MGP_CASTEiJ_T0070574.1 MGP_CASTEiJ_G0028441.1 mouse_genomes_project 5 20887919 20891955 + Rint1 protein_coding processed_transcript MGP_CASTEiJ_T0007857.1 MGP_CASTEiJ_G0006430.1 mouse_genomes_project 5 20441871 20443348 + 4930580E04Rik lincRNA lincRNA MGP_CASTEiJ_T0008209.1 MGP_CASTEiJ_G0006672.1 mouse_genomes_project 5 140199783 140212647 + lincRNA lincRNA MGP_CASTEiJ_T0101121.1 MGP_CASTEiJ_G0038034.1 mouse_genomes_project 5 67388557 67388684 - Gm23605 snoRNA snoRNA MGP_CASTEiJ_T0017392.1 MGP_CASTEiJ_G0014912.1 mouse_genomes_project 5 41798448 41819878 - Gm42716 processed_transcript sense_intronic MGP_CASTEiJ_T0017393.1 MGP_CASTEiJ_G0014912.1 mouse_genomes_project 5 41814696 41819822 - Gm42716 processed_transcript sense_intronic MGP_CASTEiJ_T0017394.1 MGP_CASTEiJ_G0014912.1 mouse_genomes_project 5 41819372 41821171 - Gm42716 processed_transcript retained_intron MGP_CASTEiJ_T0075566.1 MGP_CASTEiJ_G0029369.1 mouse_genomes_project 5 141440833 141452830 + MGP_CASTEiJ_P0075566 Stag3 protein_coding protein_coding MGP_CASTEiJ_T0075567.1 MGP_CASTEiJ_G0029369.1 mouse_genomes_project 5 141441102 141474417 + Stag3 protein_coding retained_intron MGP_CASTEiJ_T0075568.1 MGP_CASTEiJ_G0029369.1 mouse_genomes_project 5 141441119 141474414 + Stag3 protein_coding retained_intron MGP_CASTEiJ_T0075569.1 MGP_CASTEiJ_G0029369.1 mouse_genomes_project 5 141441119 141474417 + MGP_CASTEiJ_P0075569 Stag3 protein_coding protein_coding MGP_CASTEiJ_T0075570.1 MGP_CASTEiJ_G0029369.1 mouse_genomes_project 5 141441141 141474417 + MGP_CASTEiJ_P0075570 Stag3 protein_coding protein_coding MGP_CASTEiJ_T0075571.1 MGP_CASTEiJ_G0029369.1 mouse_genomes_project 5 141441153 141452485 + MGP_CASTEiJ_P0075571 Stag3 protein_coding protein_coding MGP_CASTEiJ_T0075572.1 MGP_CASTEiJ_G0029369.1 mouse_genomes_project 5 141461556 141463822 + Stag3 protein_coding processed_transcript MGP_CASTEiJ_T0075573.1 MGP_CASTEiJ_G0029369.1 mouse_genomes_project 5 141466788 141471583 + MGP_CASTEiJ_P0075573 Stag3 protein_coding protein_coding MGP_CASTEiJ_T0075574.1 MGP_CASTEiJ_G0029369.1 mouse_genomes_project 5 141471537 141474410 + MGP_CASTEiJ_P0075574 Stag3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001765.1 MGP_CASTEiJ_G0001687.1 mouse_genomes_project 5 127671924 127676197 + TEC TEC MGP_CASTEiJ_T0075871.1 MGP_CASTEiJ_G0029432.1 mouse_genomes_project 5 147070524 147107003 + MGP_CASTEiJ_P0075871 Grid2ip protein_coding protein_coding MGP_CASTEiJ_T0075872.1 MGP_CASTEiJ_G0029432.1 mouse_genomes_project 5 147076960 147107333 + MGP_CASTEiJ_P0075872 Grid2ip protein_coding protein_coding MGP_CASTEiJ_T0075873.1 MGP_CASTEiJ_G0029432.1 mouse_genomes_project 5 147083230 147107003 + MGP_CASTEiJ_P0075873 Grid2ip protein_coding protein_coding MGP_CASTEiJ_T0075874.1 MGP_CASTEiJ_G0029432.1 mouse_genomes_project 5 147086008 147088778 + Grid2ip protein_coding retained_intron MGP_CASTEiJ_T0075875.1 MGP_CASTEiJ_G0029432.1 mouse_genomes_project 5 147088505 147094486 + Grid2ip protein_coding retained_intron MGP_CASTEiJ_T0001501.1 MGP_CASTEiJ_G0001427.1 mouse_genomes_project 5 46578489 46582722 - TEC TEC MGP_CASTEiJ_T0001403.1 MGP_CASTEiJ_G0001332.1 mouse_genomes_project 5 11790210 11793479 + TEC TEC MGP_CASTEiJ_T0098611.1 MGP_CASTEiJ_G0035542.1 mouse_genomes_project 5 51429649 51429763 - n-R5s172 rRNA rRNA MGP_CASTEiJ_T0071643.1 MGP_CASTEiJ_G0028619.1 mouse_genomes_project 5 35995043 35998203 + MGP_CASTEiJ_P0071643 Drd5 protein_coding protein_coding MGP_CASTEiJ_T0098609.1 MGP_CASTEiJ_G0035540.1 mouse_genomes_project 5 34715875 34715978 - Gm25551 rRNA rRNA MGP_CASTEiJ_T0076107.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151646380 151775136 + MGP_CASTEiJ_P0076107 Pan3 protein_coding protein_coding MGP_CASTEiJ_T0076108.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151646672 151775130 + MGP_CASTEiJ_P0076108 Pan3 protein_coding protein_coding MGP_CASTEiJ_T0076109.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151646799 151728913 + MGP_CASTEiJ_P0076109 Pan3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076110.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151647115 151675395 + Pan3 protein_coding retained_intron MGP_CASTEiJ_T0076111.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151647115 151673785 + Pan3 protein_coding processed_transcript MGP_CASTEiJ_T0076112.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151647115 151753846 + MGP_CASTEiJ_P0076112 Pan3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076113.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151669627 151712479 + Pan3 protein_coding retained_intron MGP_CASTEiJ_T0076114.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151669631 151772618 + MGP_CASTEiJ_P0076114 Pan3 protein_coding protein_coding MGP_CASTEiJ_T0076115.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151669631 151772618 + MGP_CASTEiJ_P0076115 Pan3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076116.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151669711 151753469 + MGP_CASTEiJ_P0076116 Pan3 protein_coding protein_coding MGP_CASTEiJ_T0076117.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151671999 151674164 + Pan3 protein_coding retained_intron MGP_CASTEiJ_T0076118.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151673311 151717635 + Pan3 protein_coding processed_transcript MGP_CASTEiJ_T0076119.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151673342 151775130 + MGP_CASTEiJ_P0076119 Pan3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076120.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151743250 151747025 + Pan3 protein_coding retained_intron MGP_CASTEiJ_T0076121.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151745043 151753499 + Pan3 protein_coding retained_intron MGP_CASTEiJ_T0076122.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151745446 151775130 + MGP_CASTEiJ_P0076122 Pan3 protein_coding protein_coding MGP_CASTEiJ_T0076123.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151752910 151753827 + Pan3 protein_coding retained_intron MGP_CASTEiJ_T0076124.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151756529 151775122 + Pan3 protein_coding retained_intron MGP_CASTEiJ_T0076125.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151756735 151758536 + Pan3 protein_coding retained_intron MGP_CASTEiJ_T0076126.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151756811 151760143 + Pan3 protein_coding processed_transcript MGP_CASTEiJ_T0076127.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151758190 151760089 + Pan3 protein_coding retained_intron MGP_CASTEiJ_T0076128.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151763076 151769861 + Pan3 protein_coding retained_intron MGP_CASTEiJ_T0076129.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151763968 151772356 + Pan3 protein_coding processed_transcript MGP_CASTEiJ_T0076130.1 MGP_CASTEiJ_G0029488.1 mouse_genomes_project 5 151766007 151775127 + MGP_CASTEiJ_P0076130 Pan3 protein_coding protein_coding MGP_CASTEiJ_T0004620.1 MGP_CASTEiJ_G0004000.1 mouse_genomes_project 5 100617431 100624376 + Gm15777 antisense antisense MGP_CASTEiJ_T0073278.1 MGP_CASTEiJ_G0028956.1 mouse_genomes_project 5 108345809 108353513 - MGP_CASTEiJ_P0073278 Gfi1 protein_coding protein_coding MGP_CASTEiJ_T0073279.1 MGP_CASTEiJ_G0028956.1 mouse_genomes_project 5 108345809 108354982 - MGP_CASTEiJ_P0073279 Gfi1 protein_coding protein_coding MGP_CASTEiJ_T0073280.1 MGP_CASTEiJ_G0028956.1 mouse_genomes_project 5 108345818 108354982 - MGP_CASTEiJ_P0073280 Gfi1 protein_coding protein_coding MGP_CASTEiJ_T0073281.1 MGP_CASTEiJ_G0028956.1 mouse_genomes_project 5 108346376 108353131 - MGP_CASTEiJ_P0073281 Gfi1 protein_coding protein_coding MGP_CASTEiJ_T0073282.1 MGP_CASTEiJ_G0028956.1 mouse_genomes_project 5 108350781 108355213 - MGP_CASTEiJ_P0073282 Gfi1 protein_coding protein_coding MGP_CASTEiJ_T0071166.1 MGP_CASTEiJ_G0028543.1 mouse_genomes_project 5 29817559 29854883 + MGP_CASTEiJ_P0071166 Ppp1cb protein_coding protein_coding MGP_CASTEiJ_T0071167.1 MGP_CASTEiJ_G0028543.1 mouse_genomes_project 5 29817868 29878184 + MGP_CASTEiJ_P0071167 Ppp1cb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071168.1 MGP_CASTEiJ_G0028543.1 mouse_genomes_project 5 29817902 29822464 + Ppp1cb protein_coding retained_intron MGP_CASTEiJ_T0071169.1 MGP_CASTEiJ_G0028543.1 mouse_genomes_project 5 29817938 29850413 + MGP_CASTEiJ_P0071169 Ppp1cb protein_coding protein_coding MGP_CASTEiJ_T0071170.1 MGP_CASTEiJ_G0028543.1 mouse_genomes_project 5 29836306 29843383 + Ppp1cb protein_coding processed_transcript MGP_CASTEiJ_T0071171.1 MGP_CASTEiJ_G0028543.1 mouse_genomes_project 5 29844041 29852131 + MGP_CASTEiJ_P0071171 Ppp1cb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074120.1 MGP_CASTEiJ_G0029117.1 mouse_genomes_project 5 122488457 122509454 - MGP_CASTEiJ_P0074120 Oas2 protein_coding protein_coding MGP_CASTEiJ_T0074121.1 MGP_CASTEiJ_G0029117.1 mouse_genomes_project 5 122488458 122509454 - MGP_CASTEiJ_P0074121 Oas2 protein_coding protein_coding MGP_CASTEiJ_T0074122.1 MGP_CASTEiJ_G0029117.1 mouse_genomes_project 5 122488460 122493683 - Oas2 protein_coding retained_intron MGP_CASTEiJ_T0074123.1 MGP_CASTEiJ_G0029117.1 mouse_genomes_project 5 122491411 122496500 - MGP_CASTEiJ_P0074123 Oas2 protein_coding protein_coding MGP_CASTEiJ_T0001583.1 MGP_CASTEiJ_G0001507.1 mouse_genomes_project 5 64542772 64543686 + TEC TEC MGP_CASTEiJ_T0075856.1 MGP_CASTEiJ_G0029430.1 mouse_genomes_project 5 147008475 147027395 - E130309D02Rik protein_coding processed_transcript MGP_CASTEiJ_T0075857.1 MGP_CASTEiJ_G0029430.1 mouse_genomes_project 5 147008487 147027691 - MGP_CASTEiJ_P0075857 E130309D02Rik protein_coding protein_coding MGP_CASTEiJ_T0075858.1 MGP_CASTEiJ_G0029430.1 mouse_genomes_project 5 147008489 147027462 - E130309D02Rik protein_coding retained_intron MGP_CASTEiJ_T0075859.1 MGP_CASTEiJ_G0029430.1 mouse_genomes_project 5 147018015 147027671 - E130309D02Rik protein_coding processed_transcript MGP_CASTEiJ_T0070616.1 MGP_CASTEiJ_G0028452.1 mouse_genomes_project 5 21543920 21547695 + MGP_CASTEiJ_P0070616 Slc4a2 protein_coding protein_coding MGP_CASTEiJ_T0070617.1 MGP_CASTEiJ_G0028452.1 mouse_genomes_project 5 21543936 21550237 + Slc4a2 protein_coding processed_transcript MGP_CASTEiJ_T0070618.1 MGP_CASTEiJ_G0028452.1 mouse_genomes_project 5 21543942 21549970 + MGP_CASTEiJ_P0070618 Slc4a2 protein_coding protein_coding MGP_CASTEiJ_T0070619.1 MGP_CASTEiJ_G0028452.1 mouse_genomes_project 5 21545312 21562478 + MGP_CASTEiJ_P0070619 Slc4a2 protein_coding protein_coding MGP_CASTEiJ_T0070620.1 MGP_CASTEiJ_G0028452.1 mouse_genomes_project 5 21545356 21547672 + Slc4a2 protein_coding processed_transcript MGP_CASTEiJ_T0070621.1 MGP_CASTEiJ_G0028452.1 mouse_genomes_project 5 21545365 21547786 + Slc4a2 protein_coding processed_transcript MGP_CASTEiJ_T0070622.1 MGP_CASTEiJ_G0028452.1 mouse_genomes_project 5 21546911 21549940 + MGP_CASTEiJ_P0070622 Slc4a2 protein_coding protein_coding MGP_CASTEiJ_T0070623.1 MGP_CASTEiJ_G0028452.1 mouse_genomes_project 5 21548296 21562475 + MGP_CASTEiJ_P0070623 Slc4a2 protein_coding protein_coding MGP_CASTEiJ_T0070624.1 MGP_CASTEiJ_G0028452.1 mouse_genomes_project 5 21548351 21549926 + Slc4a2 protein_coding processed_transcript MGP_CASTEiJ_T0070625.1 MGP_CASTEiJ_G0028452.1 mouse_genomes_project 5 21548511 21562475 + MGP_CASTEiJ_P0070625 Slc4a2 protein_coding protein_coding MGP_CASTEiJ_T0070626.1 MGP_CASTEiJ_G0028452.1 mouse_genomes_project 5 21549105 21549867 + Slc4a2 protein_coding retained_intron MGP_CASTEiJ_T0070627.1 MGP_CASTEiJ_G0028452.1 mouse_genomes_project 5 21551423 21554441 + Slc4a2 protein_coding retained_intron MGP_CASTEiJ_T0070628.1 MGP_CASTEiJ_G0028452.1 mouse_genomes_project 5 21555633 21556576 + Slc4a2 protein_coding retained_intron MGP_CASTEiJ_T0070629.1 MGP_CASTEiJ_G0028452.1 mouse_genomes_project 5 21556848 21560784 + Slc4a2 protein_coding retained_intron MGP_CASTEiJ_T0070632.1 MGP_CASTEiJ_G0028452.1 mouse_genomes_project 5 21561273 21562100 + Slc4a2 protein_coding retained_intron MGP_CASTEiJ_T0075954.1 MGP_CASTEiJ_G0029451.1 mouse_genomes_project 5 148008516 148109108 - MGP_CASTEiJ_P0075954 Baiap2l1 protein_coding protein_coding MGP_CASTEiJ_T0075955.1 MGP_CASTEiJ_G0029451.1 mouse_genomes_project 5 148029459 148036253 - Baiap2l1 protein_coding processed_transcript MGP_CASTEiJ_T0001745.1 MGP_CASTEiJ_G0001668.1 mouse_genomes_project 5 124394558 124394883 + TEC TEC MGP_CASTEiJ_T0014374.1 MGP_CASTEiJ_G0012537.1 mouse_genomes_project 5 17245008 17245348 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075959.1 MGP_CASTEiJ_G0029454.1 mouse_genomes_project 5 148562927 148563851 + Trrap protein_coding processed_transcript MGP_CASTEiJ_T0075960.1 MGP_CASTEiJ_G0029454.1 mouse_genomes_project 5 148563250 148584329 + Trrap protein_coding retained_intron MGP_CASTEiJ_T0075961.1 MGP_CASTEiJ_G0029454.1 mouse_genomes_project 5 148563703 148572242 + MGP_CASTEiJ_P0075961 Trrap protein_coding protein_coding MGP_CASTEiJ_T0075962.1 MGP_CASTEiJ_G0029454.1 mouse_genomes_project 5 148563953 148657732 + MGP_CASTEiJ_P0075962 Trrap protein_coding protein_coding MGP_CASTEiJ_T0075963.1 MGP_CASTEiJ_G0029454.1 mouse_genomes_project 5 148566255 148657705 + MGP_CASTEiJ_P0075963 Trrap protein_coding protein_coding MGP_CASTEiJ_T0075964.1 MGP_CASTEiJ_G0029454.1 mouse_genomes_project 5 148566255 148657730 + MGP_CASTEiJ_P0075964 Trrap protein_coding protein_coding MGP_CASTEiJ_T0075965.1 MGP_CASTEiJ_G0029454.1 mouse_genomes_project 5 148566316 148657739 + MGP_CASTEiJ_P0075965 Trrap protein_coding unknown_likely_coding MGP_CASTEiJ_T0075966.1 MGP_CASTEiJ_G0029454.1 mouse_genomes_project 5 148580618 148657730 + MGP_CASTEiJ_P0075966 Trrap protein_coding protein_coding MGP_CASTEiJ_T0075967.1 MGP_CASTEiJ_G0029454.1 mouse_genomes_project 5 148587636 148589799 + Trrap protein_coding retained_intron MGP_CASTEiJ_T0075968.1 MGP_CASTEiJ_G0029454.1 mouse_genomes_project 5 148603043 148632839 + Trrap protein_coding retained_intron MGP_CASTEiJ_T0075969.1 MGP_CASTEiJ_G0029454.1 mouse_genomes_project 5 148610325 148612081 + Trrap protein_coding retained_intron MGP_CASTEiJ_T0075970.1 MGP_CASTEiJ_G0029454.1 mouse_genomes_project 5 148618049 148621332 + Trrap protein_coding retained_intron MGP_CASTEiJ_T0075971.1 MGP_CASTEiJ_G0029454.1 mouse_genomes_project 5 148637284 148638744 + Trrap protein_coding retained_intron MGP_CASTEiJ_T0075972.1 MGP_CASTEiJ_G0029454.1 mouse_genomes_project 5 148653610 148657731 + Trrap protein_coding retained_intron MGP_CASTEiJ_T0075973.1 MGP_CASTEiJ_G0029454.1 mouse_genomes_project 5 148655133 148657293 + Trrap protein_coding processed_transcript MGP_CASTEiJ_T0014682.1 MGP_CASTEiJ_G0012845.1 mouse_genomes_project 5 150089341 150090100 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075121.1 MGP_CASTEiJ_G0029281.1 mouse_genomes_project 5 138106760 138109053 - MGP_CASTEiJ_P0075121 Fzd9 protein_coding protein_coding MGP_CASTEiJ_T0011498.1 MGP_CASTEiJ_G0009664.1 mouse_genomes_project 5 105809220 105830843 - MGP_CASTEiJ_P0011498 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0073803.1 MGP_CASTEiJ_G0029055.1 mouse_genomes_project 5 116080135 116096342 + MGP_CASTEiJ_P0073803 Oasl2 protein_coding protein_coding MGP_CASTEiJ_T0073804.1 MGP_CASTEiJ_G0029055.1 mouse_genomes_project 5 116080200 116083370 + MGP_CASTEiJ_P0073804 Oasl2 protein_coding protein_coding MGP_CASTEiJ_T0073805.1 MGP_CASTEiJ_G0029055.1 mouse_genomes_project 5 116080229 116083154 + MGP_CASTEiJ_P0073805 Oasl2 protein_coding protein_coding MGP_CASTEiJ_T0073806.1 MGP_CASTEiJ_G0029055.1 mouse_genomes_project 5 116080731 116081538 + Oasl2 protein_coding retained_intron MGP_CASTEiJ_T0073807.1 MGP_CASTEiJ_G0029055.1 mouse_genomes_project 5 116080775 116083459 + Oasl2 protein_coding retained_intron MGP_CASTEiJ_T0073808.1 MGP_CASTEiJ_G0029055.1 mouse_genomes_project 5 116080941 116096332 + MGP_CASTEiJ_P0073808 Oasl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073809.1 MGP_CASTEiJ_G0029055.1 mouse_genomes_project 5 116084561 116095331 + MGP_CASTEiJ_P0073809 Oasl2 protein_coding protein_coding MGP_CASTEiJ_T0073810.1 MGP_CASTEiJ_G0029055.1 mouse_genomes_project 5 116085047 116087149 + Oasl2 protein_coding retained_intron MGP_CASTEiJ_T0073811.1 MGP_CASTEiJ_G0029055.1 mouse_genomes_project 5 116087640 116089936 + Oasl2 protein_coding retained_intron MGP_CASTEiJ_T0001743.1 MGP_CASTEiJ_G0001666.1 mouse_genomes_project 5 123811928 123813061 - TEC TEC MGP_CASTEiJ_T0014508.1 MGP_CASTEiJ_G0012671.1 mouse_genomes_project 5 67123655 67123978 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0074053.1 MGP_CASTEiJ_G0029102.1 mouse_genomes_project 5 121317420 121320419 + Tbx3 protein_coding retained_intron MGP_CASTEiJ_T0074054.1 MGP_CASTEiJ_G0029102.1 mouse_genomes_project 5 121317420 121333245 + MGP_CASTEiJ_P0074054 Tbx3 protein_coding protein_coding MGP_CASTEiJ_T0074055.1 MGP_CASTEiJ_G0029102.1 mouse_genomes_project 5 121317613 121333411 + MGP_CASTEiJ_P0074055 Tbx3 protein_coding protein_coding MGP_CASTEiJ_T0074056.1 MGP_CASTEiJ_G0029102.1 mouse_genomes_project 5 121317769 121333411 + MGP_CASTEiJ_P0074056 Tbx3 protein_coding protein_coding MGP_CASTEiJ_T0074057.1 MGP_CASTEiJ_G0029102.1 mouse_genomes_project 5 121322210 121327330 + Tbx3 protein_coding retained_intron MGP_CASTEiJ_T0074058.1 MGP_CASTEiJ_G0029102.1 mouse_genomes_project 5 121326948 121327532 + Tbx3 protein_coding processed_transcript MGP_CASTEiJ_T0074539.1 MGP_CASTEiJ_G0029181.1 mouse_genomes_project 5 125860712 125865046 + Kntc1 protein_coding retained_intron MGP_CASTEiJ_T0074540.1 MGP_CASTEiJ_G0029181.1 mouse_genomes_project 5 125860722 125934259 + MGP_CASTEiJ_P0074540 Kntc1 protein_coding protein_coding MGP_CASTEiJ_T0074541.1 MGP_CASTEiJ_G0029181.1 mouse_genomes_project 5 125882383 125934204 + MGP_CASTEiJ_P0074541 Kntc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0074542.1 MGP_CASTEiJ_G0029181.1 mouse_genomes_project 5 125885515 125892315 + Kntc1 protein_coding processed_transcript MGP_CASTEiJ_T0074543.1 MGP_CASTEiJ_G0029181.1 mouse_genomes_project 5 125893861 125894752 + MGP_CASTEiJ_P0074543 Kntc1 protein_coding protein_coding MGP_CASTEiJ_T0074544.1 MGP_CASTEiJ_G0029181.1 mouse_genomes_project 5 125899825 125902754 + Kntc1 protein_coding retained_intron MGP_CASTEiJ_T0074545.1 MGP_CASTEiJ_G0029181.1 mouse_genomes_project 5 125924105 125934257 + MGP_CASTEiJ_P0074545 Kntc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074546.1 MGP_CASTEiJ_G0029181.1 mouse_genomes_project 5 125932244 125934258 + Kntc1 protein_coding retained_intron MGP_CASTEiJ_T0073341.1 MGP_CASTEiJ_G0028969.1 mouse_genomes_project 5 109141463 109171291 + MGP_CASTEiJ_P0073341 Pcgf3 protein_coding protein_coding MGP_CASTEiJ_T0073342.1 MGP_CASTEiJ_G0028969.1 mouse_genomes_project 5 109141463 109187206 + MGP_CASTEiJ_P0073342 Pcgf3 protein_coding protein_coding MGP_CASTEiJ_T0073343.1 MGP_CASTEiJ_G0028969.1 mouse_genomes_project 5 109141544 109168507 + MGP_CASTEiJ_P0073343 Pcgf3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073344.1 MGP_CASTEiJ_G0028969.1 mouse_genomes_project 5 109154119 109158733 + Pcgf3 protein_coding retained_intron MGP_CASTEiJ_T0073345.1 MGP_CASTEiJ_G0028969.1 mouse_genomes_project 5 109168555 109176493 + Pcgf3 protein_coding retained_intron MGP_CASTEiJ_T0001806.1 MGP_CASTEiJ_G0001728.1 mouse_genomes_project 5 135226173 135226998 - TEC TEC MGP_CASTEiJ_T0072428.1 MGP_CASTEiJ_G0028752.1 mouse_genomes_project 5 75550315 75581824 - MGP_CASTEiJ_P0072428 Nmu protein_coding protein_coding MGP_CASTEiJ_T0073077.1 MGP_CASTEiJ_G0028905.1 mouse_genomes_project 5 101664991 101674109 - MGP_CASTEiJ_P0073077 Nkx6-1 protein_coding protein_coding MGP_CASTEiJ_T0001390.1 MGP_CASTEiJ_G0001319.1 mouse_genomes_project 5 5987304 5987535 + TEC TEC MGP_CASTEiJ_T0074218.1 MGP_CASTEiJ_G0029138.1 mouse_genomes_project 5 123594219 123622945 + MGP_CASTEiJ_P0074218 Brap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074219.1 MGP_CASTEiJ_G0029138.1 mouse_genomes_project 5 123594246 123597594 + Brap protein_coding retained_intron MGP_CASTEiJ_T0074220.1 MGP_CASTEiJ_G0029138.1 mouse_genomes_project 5 123594412 123622951 + MGP_CASTEiJ_P0074220 Brap protein_coding protein_coding MGP_CASTEiJ_T0074221.1 MGP_CASTEiJ_G0029138.1 mouse_genomes_project 5 123595681 123608771 + MGP_CASTEiJ_P0074221 Brap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074222.1 MGP_CASTEiJ_G0029138.1 mouse_genomes_project 5 123595720 123597334 + Brap protein_coding retained_intron MGP_CASTEiJ_T0074223.1 MGP_CASTEiJ_G0029138.1 mouse_genomes_project 5 123599964 123622950 + Brap protein_coding processed_transcript MGP_CASTEiJ_T0074224.1 MGP_CASTEiJ_G0029138.1 mouse_genomes_project 5 123618667 123622947 + Brap protein_coding retained_intron MGP_CASTEiJ_T0070585.1 MGP_CASTEiJ_G0028445.1 mouse_genomes_project 5 21278284 21297036 + MGP_CASTEiJ_P0070585 Nupl2 protein_coding protein_coding MGP_CASTEiJ_T0070586.1 MGP_CASTEiJ_G0028445.1 mouse_genomes_project 5 21278321 21295856 + MGP_CASTEiJ_P0070586 Nupl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070587.1 MGP_CASTEiJ_G0028445.1 mouse_genomes_project 5 21280823 21283185 + Nupl2 protein_coding retained_intron MGP_CASTEiJ_T0070588.1 MGP_CASTEiJ_G0028445.1 mouse_genomes_project 5 21291224 21294451 + Nupl2 protein_coding retained_intron MGP_CASTEiJ_T0004524.1 MGP_CASTEiJ_G0003926.1 mouse_genomes_project 5 28074982 28080932 - Gm15461 antisense antisense MGP_CASTEiJ_T0014694.1 MGP_CASTEiJ_G0012857.1 mouse_genomes_project 5 154094115 154094574 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101142.1 MGP_CASTEiJ_G0038055.1 mouse_genomes_project 5 119772905 119773037 + Gm25076 snoRNA snoRNA MGP_CASTEiJ_T0099914.1 MGP_CASTEiJ_G0036827.1 mouse_genomes_project 5 116759879 116760020 + Gm24265 snRNA snRNA MGP_CASTEiJ_T0099923.1 MGP_CASTEiJ_G0036836.1 mouse_genomes_project 5 128651726 128651833 - Gm23151 snRNA snRNA MGP_CASTEiJ_T0072475.1 MGP_CASTEiJ_G0028758.1 mouse_genomes_project 5 76210458 76230693 + MGP_CASTEiJ_P0072475 Paics protein_coding protein_coding MGP_CASTEiJ_T0072476.1 MGP_CASTEiJ_G0028758.1 mouse_genomes_project 5 76210499 76230697 + MGP_CASTEiJ_P0072476 Paics protein_coding protein_coding MGP_CASTEiJ_T0072477.1 MGP_CASTEiJ_G0028758.1 mouse_genomes_project 5 76210519 76230501 + MGP_CASTEiJ_P0072477 Paics protein_coding protein_coding MGP_CASTEiJ_T0072478.1 MGP_CASTEiJ_G0028758.1 mouse_genomes_project 5 76210533 76221141 + MGP_CASTEiJ_P0072478 Paics protein_coding protein_coding MGP_CASTEiJ_T0072479.1 MGP_CASTEiJ_G0028758.1 mouse_genomes_project 5 76210928 76225706 + MGP_CASTEiJ_P0072479 Paics protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072480.1 MGP_CASTEiJ_G0028758.1 mouse_genomes_project 5 76210971 76230698 + MGP_CASTEiJ_P0072480 Paics protein_coding unknown_likely_coding MGP_CASTEiJ_T0072481.1 MGP_CASTEiJ_G0028758.1 mouse_genomes_project 5 76223358 76226197 + Paics protein_coding retained_intron MGP_CASTEiJ_T0072482.1 MGP_CASTEiJ_G0028758.1 mouse_genomes_project 5 76229344 76230029 + Paics protein_coding retained_intron MGP_CASTEiJ_T0076277.1 MGP_CASTEiJ_G0029510.1 mouse_genomes_project 5 155119203 155159590 - N4bp2l2 protein_coding processed_transcript MGP_CASTEiJ_T0076278.1 MGP_CASTEiJ_G0029510.1 mouse_genomes_project 5 155148194 155191161 - MGP_CASTEiJ_P0076278 N4bp2l2 protein_coding protein_coding MGP_CASTEiJ_T0076279.1 MGP_CASTEiJ_G0029510.1 mouse_genomes_project 5 155152961 155160327 - N4bp2l2 protein_coding retained_intron MGP_CASTEiJ_T0076280.1 MGP_CASTEiJ_G0029510.1 mouse_genomes_project 5 155155239 155176747 - MGP_CASTEiJ_P0076280 N4bp2l2 protein_coding protein_coding MGP_CASTEiJ_T0076281.1 MGP_CASTEiJ_G0029510.1 mouse_genomes_project 5 155155252 155159863 - N4bp2l2 protein_coding retained_intron MGP_CASTEiJ_T0076282.1 MGP_CASTEiJ_G0029510.1 mouse_genomes_project 5 155160275 155191126 - N4bp2l2 protein_coding retained_intron MGP_CASTEiJ_T0076283.1 MGP_CASTEiJ_G0029510.1 mouse_genomes_project 5 155177676 155190896 - MGP_CASTEiJ_P0076283 N4bp2l2 protein_coding protein_coding MGP_CASTEiJ_T0076284.1 MGP_CASTEiJ_G0029510.1 mouse_genomes_project 5 155190724 155191728 - N4bp2l2 protein_coding retained_intron MGP_CASTEiJ_T0001651.1 MGP_CASTEiJ_G0001574.1 mouse_genomes_project 5 90923847 90926978 + TEC TEC MGP_CASTEiJ_T0001750.1 MGP_CASTEiJ_G0001673.1 mouse_genomes_project 5 124958323 124959922 - TEC TEC MGP_CASTEiJ_T0075619.1 MGP_CASTEiJ_G0029378.1 mouse_genomes_project 5 142486759 142523088 + MGP_CASTEiJ_P0075619 Dnaaf5 protein_coding protein_coding MGP_CASTEiJ_T0075620.1 MGP_CASTEiJ_G0029378.1 mouse_genomes_project 5 142486765 142522608 + MGP_CASTEiJ_P0075620 Dnaaf5 protein_coding protein_coding MGP_CASTEiJ_T0075621.1 MGP_CASTEiJ_G0029378.1 mouse_genomes_project 5 142503620 142514478 + Dnaaf5 protein_coding processed_transcript MGP_CASTEiJ_T0014442.1 MGP_CASTEiJ_G0012605.1 mouse_genomes_project 5 34934498 34934650 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075738.1 MGP_CASTEiJ_G0029405.1 mouse_genomes_project 5 144086291 144119871 - MGP_CASTEiJ_P0075738 Ttyh3 protein_coding protein_coding MGP_CASTEiJ_T0075739.1 MGP_CASTEiJ_G0029405.1 mouse_genomes_project 5 144086291 144119877 - MGP_CASTEiJ_P0075739 Ttyh3 protein_coding protein_coding MGP_CASTEiJ_T0075740.1 MGP_CASTEiJ_G0029405.1 mouse_genomes_project 5 144090813 144094946 - MGP_CASTEiJ_P0075740 Ttyh3 protein_coding protein_coding MGP_CASTEiJ_T0075741.1 MGP_CASTEiJ_G0029405.1 mouse_genomes_project 5 144098532 144099000 - Ttyh3 protein_coding retained_intron MGP_CASTEiJ_T0075742.1 MGP_CASTEiJ_G0029405.1 mouse_genomes_project 5 144098909 144103838 - Ttyh3 protein_coding retained_intron MGP_CASTEiJ_T0075743.1 MGP_CASTEiJ_G0029405.1 mouse_genomes_project 5 144119316 144119843 - Ttyh3 protein_coding processed_transcript MGP_CASTEiJ_T0001766.1 MGP_CASTEiJ_G0001688.1 mouse_genomes_project 5 128721581 128722578 + TEC TEC MGP_CASTEiJ_T0008113.1 MGP_CASTEiJ_G0006610.1 mouse_genomes_project 5 116918855 116919619 - 1110006O24Rik lincRNA lincRNA MGP_CASTEiJ_T0073838.1 MGP_CASTEiJ_G0029062.1 mouse_genomes_project 5 116336647 116348686 - MGP_CASTEiJ_P0073838 Unc119b protein_coding protein_coding MGP_CASTEiJ_T0073839.1 MGP_CASTEiJ_G0029062.1 mouse_genomes_project 5 116339523 116342052 - Unc119b protein_coding retained_intron MGP_CASTEiJ_T0073840.1 MGP_CASTEiJ_G0029062.1 mouse_genomes_project 5 116344163 116348636 - Unc119b protein_coding retained_intron MGP_CASTEiJ_T0011258.1 MGP_CASTEiJ_G0009446.1 mouse_genomes_project 5 20549988 20550318 - Gm25219 misc_RNA misc_RNA MGP_CASTEiJ_T0075488.1 MGP_CASTEiJ_G0029350.1 mouse_genomes_project 5 140890214 140905825 - MGP_CASTEiJ_P0075488 protein_coding protein_coding MGP_CASTEiJ_T0075489.1 MGP_CASTEiJ_G0029350.1 mouse_genomes_project 5 140890314 140898372 - protein_coding retained_intron MGP_CASTEiJ_T0074190.1 MGP_CASTEiJ_G0029132.1 mouse_genomes_project 5 123416023 123418581 - MGP_CASTEiJ_P0074190 protein_coding protein_coding MGP_CASTEiJ_T0007848.1 MGP_CASTEiJ_G0006425.1 mouse_genomes_project 5 12710976 12721184 - Gm3510 lincRNA lincRNA MGP_CASTEiJ_T0071205.1 MGP_CASTEiJ_G0028551.1 mouse_genomes_project 5 30688425 30715695 - MGP_CASTEiJ_P0071205 Ctbp1 protein_coding protein_coding MGP_CASTEiJ_T0071206.1 MGP_CASTEiJ_G0028551.1 mouse_genomes_project 5 30688456 30715693 - MGP_CASTEiJ_P0071206 Ctbp1 protein_coding protein_coding MGP_CASTEiJ_T0071207.1 MGP_CASTEiJ_G0028551.1 mouse_genomes_project 5 30688727 30715682 - MGP_CASTEiJ_P0071207 Ctbp1 protein_coding protein_coding MGP_CASTEiJ_T0071208.1 MGP_CASTEiJ_G0028551.1 mouse_genomes_project 5 30688870 30689953 - Ctbp1 protein_coding retained_intron MGP_CASTEiJ_T0071209.1 MGP_CASTEiJ_G0028551.1 mouse_genomes_project 5 30688963 30690256 - Ctbp1 protein_coding retained_intron MGP_CASTEiJ_T0071210.1 MGP_CASTEiJ_G0028551.1 mouse_genomes_project 5 30689202 30715672 - MGP_CASTEiJ_P0071210 Ctbp1 protein_coding protein_coding MGP_CASTEiJ_T0071211.1 MGP_CASTEiJ_G0028551.1 mouse_genomes_project 5 30691085 30710183 - MGP_CASTEiJ_P0071211 Ctbp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071212.1 MGP_CASTEiJ_G0028551.1 mouse_genomes_project 5 30691560 30715680 - MGP_CASTEiJ_P0071212 Ctbp1 protein_coding protein_coding MGP_CASTEiJ_T0071213.1 MGP_CASTEiJ_G0028551.1 mouse_genomes_project 5 30699998 30710331 - MGP_CASTEiJ_P0071213 Ctbp1 protein_coding protein_coding MGP_CASTEiJ_T0071214.1 MGP_CASTEiJ_G0028551.1 mouse_genomes_project 5 30701340 30710219 - Ctbp1 protein_coding retained_intron MGP_CASTEiJ_T0071215.1 MGP_CASTEiJ_G0028551.1 mouse_genomes_project 5 30701757 30715282 - MGP_CASTEiJ_P0071215 Ctbp1 protein_coding protein_coding MGP_CASTEiJ_T0071216.1 MGP_CASTEiJ_G0028551.1 mouse_genomes_project 5 30707649 30715293 - MGP_CASTEiJ_P0071216 Ctbp1 protein_coding protein_coding MGP_CASTEiJ_T0075711.1 MGP_CASTEiJ_G0029397.1 mouse_genomes_project 5 143414490 143754792 - MGP_CASTEiJ_P0075711 Mad1l1 protein_coding protein_coding MGP_CASTEiJ_T0075712.1 MGP_CASTEiJ_G0029397.1 mouse_genomes_project 5 143414490 143754790 - MGP_CASTEiJ_P0075712 Mad1l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075713.1 MGP_CASTEiJ_G0029397.1 mouse_genomes_project 5 143414495 143593219 - Mad1l1 protein_coding processed_transcript MGP_CASTEiJ_T0075714.1 MGP_CASTEiJ_G0029397.1 mouse_genomes_project 5 143495389 143522460 - Mad1l1 protein_coding processed_transcript MGP_CASTEiJ_T0075715.1 MGP_CASTEiJ_G0029397.1 mouse_genomes_project 5 143559777 143592960 - Mad1l1 protein_coding processed_transcript MGP_CASTEiJ_T0075716.1 MGP_CASTEiJ_G0029397.1 mouse_genomes_project 5 143585485 143689668 - Mad1l1 protein_coding processed_transcript MGP_CASTEiJ_T0074478.1 MGP_CASTEiJ_G0029174.1 mouse_genomes_project 5 125595553 125617034 + MGP_CASTEiJ_P0074478 Lrrc43 protein_coding protein_coding MGP_CASTEiJ_T0074479.1 MGP_CASTEiJ_G0029174.1 mouse_genomes_project 5 125595556 125617004 + MGP_CASTEiJ_P0074479 Lrrc43 protein_coding protein_coding MGP_CASTEiJ_T0070683.1 MGP_CASTEiJ_G0028462.1 mouse_genomes_project 5 21840654 21867615 + MGP_CASTEiJ_P0070683 Nub1 protein_coding protein_coding MGP_CASTEiJ_T0070684.1 MGP_CASTEiJ_G0028462.1 mouse_genomes_project 5 21840946 21867617 + MGP_CASTEiJ_P0070684 Nub1 protein_coding protein_coding MGP_CASTEiJ_T0070685.1 MGP_CASTEiJ_G0028462.1 mouse_genomes_project 5 21841109 21867615 + Nub1 protein_coding retained_intron MGP_CASTEiJ_T0075545.1 MGP_CASTEiJ_G0029364.1 mouse_genomes_project 5 141416110 141420069 + MGP_CASTEiJ_P0075545 Lamtor4 protein_coding protein_coding MGP_CASTEiJ_T0075546.1 MGP_CASTEiJ_G0029364.1 mouse_genomes_project 5 141416461 141420072 + Lamtor4 protein_coding processed_transcript MGP_CASTEiJ_T0010392.1 MGP_CASTEiJ_G0008580.1 mouse_genomes_project 5 82437374 82437500 - Mir1187 miRNA miRNA MGP_CASTEiJ_T0001663.1 MGP_CASTEiJ_G0001586.1 mouse_genomes_project 5 96795459 96796086 + TEC TEC MGP_CASTEiJ_T0075051.1 MGP_CASTEiJ_G0029267.1 mouse_genomes_project 5 137745122 137752227 - MGP_CASTEiJ_P0075051 Wbscr28 protein_coding protein_coding MGP_CASTEiJ_T0075052.1 MGP_CASTEiJ_G0029267.1 mouse_genomes_project 5 137745123 137752227 - MGP_CASTEiJ_P0075052 Wbscr28 protein_coding protein_coding MGP_CASTEiJ_T0074735.1 MGP_CASTEiJ_G0029215.1 mouse_genomes_project 5 127636983 127652619 + MGP_CASTEiJ_P0074735 Bri3bp protein_coding protein_coding MGP_CASTEiJ_T0001550.1 MGP_CASTEiJ_G0001475.1 mouse_genomes_project 5 56179818 56182506 + TEC TEC MGP_CASTEiJ_T0075167.1 MGP_CASTEiJ_G0029292.1 mouse_genomes_project 5 138624833 138633805 - MGP_CASTEiJ_P0075167 Tmem120a protein_coding protein_coding MGP_CASTEiJ_T0075168.1 MGP_CASTEiJ_G0029292.1 mouse_genomes_project 5 138624852 138625939 - Tmem120a protein_coding retained_intron MGP_CASTEiJ_T0075169.1 MGP_CASTEiJ_G0029292.1 mouse_genomes_project 5 138624886 138626585 - Tmem120a protein_coding processed_transcript MGP_CASTEiJ_T0075170.1 MGP_CASTEiJ_G0029292.1 mouse_genomes_project 5 138625603 138631756 - Tmem120a protein_coding retained_intron MGP_CASTEiJ_T0075171.1 MGP_CASTEiJ_G0029292.1 mouse_genomes_project 5 138626556 138633565 - MGP_CASTEiJ_P0075171 Tmem120a protein_coding protein_coding MGP_CASTEiJ_T0072185.1 MGP_CASTEiJ_G0028707.1 mouse_genomes_project 5 66798727 66838092 + MGP_CASTEiJ_P0072185 Gm5108 protein_coding protein_coding MGP_CASTEiJ_T0072186.1 MGP_CASTEiJ_G0028707.1 mouse_genomes_project 5 66798797 66838022 + Gm5108 protein_coding antisense MGP_CASTEiJ_T0072187.1 MGP_CASTEiJ_G0028707.1 mouse_genomes_project 5 66798797 66838027 + Gm5108 protein_coding antisense MGP_CASTEiJ_T0074761.1 MGP_CASTEiJ_G0029220.1 mouse_genomes_project 5 129960879 130034457 + Glt1d1 protein_coding retained_intron MGP_CASTEiJ_T0074762.1 MGP_CASTEiJ_G0029220.1 mouse_genomes_project 5 129960879 130056501 + MGP_CASTEiJ_P0074762 Glt1d1 protein_coding protein_coding MGP_CASTEiJ_T0074763.1 MGP_CASTEiJ_G0029220.1 mouse_genomes_project 5 129988177 130032424 + Glt1d1 protein_coding retained_intron MGP_CASTEiJ_T0004658.1 MGP_CASTEiJ_G0004028.1 mouse_genomes_project 5 117333021 117339664 + Gm14508 antisense antisense MGP_CASTEiJ_T0101606.1 MGP_CASTEiJ_G0038467.1 mouse_genomes_project 5 21792278 21795327 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101607.1 MGP_CASTEiJ_G0038467.1 mouse_genomes_project 5 21794150 21795201 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0007886.1 MGP_CASTEiJ_G0006449.1 mouse_genomes_project 5 30882075 30882915 - Gm43851 lincRNA lincRNA MGP_CASTEiJ_T0098607.1 MGP_CASTEiJ_G0035538.1 mouse_genomes_project 5 19507061 19507174 - n-R5s170 rRNA rRNA MGP_CASTEiJ_T0001624.1 MGP_CASTEiJ_G0001547.1 mouse_genomes_project 5 72019402 72022717 - TEC TEC MGP_CASTEiJ_T0102362.1 MGP_CASTEiJ_G0039087.1 mouse_genomes_project 5 146161039 146161552 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008202.1 MGP_CASTEiJ_G0006668.1 mouse_genomes_project 5 137764902 137765762 + 4933439J24Rik lincRNA lincRNA MGP_CASTEiJ_T0073203.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107164765 107253317 - MGP_CASTEiJ_P0073203 Zfp644 protein_coding protein_coding MGP_CASTEiJ_T0073204.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107164767 107252462 - MGP_CASTEiJ_P0073204 Zfp644 protein_coding protein_coding MGP_CASTEiJ_T0073205.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107164768 107253317 - MGP_CASTEiJ_P0073205 Zfp644 protein_coding protein_coding MGP_CASTEiJ_T0073206.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107164770 107253084 - MGP_CASTEiJ_P0073206 Zfp644 protein_coding protein_coding MGP_CASTEiJ_T0073207.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107165099 107172419 - Zfp644 protein_coding processed_transcript MGP_CASTEiJ_T0073208.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107165999 107253292 - Zfp644 protein_coding processed_transcript MGP_CASTEiJ_T0073209.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107184900 107253313 - MGP_CASTEiJ_P0073209 Zfp644 protein_coding protein_coding MGP_CASTEiJ_T0073210.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107185911 107253051 - MGP_CASTEiJ_P0073210 Zfp644 protein_coding protein_coding MGP_CASTEiJ_T0073211.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107186162 107217832 - MGP_CASTEiJ_P0073211 Zfp644 protein_coding protein_coding MGP_CASTEiJ_T0073212.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107186330 107253137 - MGP_CASTEiJ_P0073212 Zfp644 protein_coding protein_coding MGP_CASTEiJ_T0073213.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107186377 107253051 - MGP_CASTEiJ_P0073213 Zfp644 protein_coding protein_coding MGP_CASTEiJ_T0073214.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107186520 107253137 - MGP_CASTEiJ_P0073214 Zfp644 protein_coding protein_coding MGP_CASTEiJ_T0073215.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107245271 107251516 - Zfp644 protein_coding retained_intron MGP_CASTEiJ_T0073216.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107246322 107252653 - Zfp644 protein_coding retained_intron MGP_CASTEiJ_T0073217.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107247096 107253033 - Zfp644 protein_coding processed_transcript MGP_CASTEiJ_T0073218.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107247109 107253031 - Zfp644 protein_coding processed_transcript MGP_CASTEiJ_T0073219.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107251547 107253774 - Zfp644 protein_coding processed_transcript MGP_CASTEiJ_T0073220.1 MGP_CASTEiJ_G0028943.1 mouse_genomes_project 5 107251852 107252499 - Zfp644 protein_coding processed_transcript MGP_CASTEiJ_T0011283.1 MGP_CASTEiJ_G0009471.1 mouse_genomes_project 5 136982290 136982578 + Gm24139 misc_RNA misc_RNA MGP_CASTEiJ_T0008021.1 MGP_CASTEiJ_G0006554.1 mouse_genomes_project 5 100092437 100096519 + Gm9932 lincRNA lincRNA MGP_CASTEiJ_T0001489.1 MGP_CASTEiJ_G0001415.1 mouse_genomes_project 5 43581566 43585450 - TEC TEC MGP_CASTEiJ_T0073251.1 MGP_CASTEiJ_G0028951.1 mouse_genomes_project 5 108103179 108140769 + MGP_CASTEiJ_P0073251 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073252.1 MGP_CASTEiJ_G0028951.1 mouse_genomes_project 5 108122697 108138437 + MGP_CASTEiJ_P0073252 protein_coding protein_coding MGP_CASTEiJ_T0073253.1 MGP_CASTEiJ_G0028951.1 mouse_genomes_project 5 108123064 108139782 + MGP_CASTEiJ_P0073253 protein_coding protein_coding MGP_CASTEiJ_T0073254.1 MGP_CASTEiJ_G0028951.1 mouse_genomes_project 5 108123095 108134320 + MGP_CASTEiJ_P0073254 protein_coding protein_coding MGP_CASTEiJ_T0073255.1 MGP_CASTEiJ_G0028951.1 mouse_genomes_project 5 108123098 108137438 + MGP_CASTEiJ_P0073255 protein_coding protein_coding MGP_CASTEiJ_T0073256.1 MGP_CASTEiJ_G0028951.1 mouse_genomes_project 5 108131191 108134452 + protein_coding processed_transcript MGP_CASTEiJ_T0004595.1 MGP_CASTEiJ_G0003984.1 mouse_genomes_project 5 86531606 86562145 + Gm16579 antisense antisense MGP_CASTEiJ_T0075974.1 MGP_CASTEiJ_G0029455.1 mouse_genomes_project 5 148670204 148680127 - Smurf1 protein_coding retained_intron MGP_CASTEiJ_T0075975.1 MGP_CASTEiJ_G0029455.1 mouse_genomes_project 5 148670204 148763546 - MGP_CASTEiJ_P0075975 Smurf1 protein_coding protein_coding MGP_CASTEiJ_T0075976.1 MGP_CASTEiJ_G0029455.1 mouse_genomes_project 5 148670211 148763554 - MGP_CASTEiJ_P0075976 Smurf1 protein_coding protein_coding MGP_CASTEiJ_T0075977.1 MGP_CASTEiJ_G0029455.1 mouse_genomes_project 5 148672819 148763554 - MGP_CASTEiJ_P0075977 Smurf1 protein_coding protein_coding MGP_CASTEiJ_T0075978.1 MGP_CASTEiJ_G0029455.1 mouse_genomes_project 5 148678286 148693408 - MGP_CASTEiJ_P0075978 Smurf1 protein_coding protein_coding MGP_CASTEiJ_T0008177.1 MGP_CASTEiJ_G0006653.1 mouse_genomes_project 5 129331290 129348744 + 4933438B17Rik lincRNA lincRNA MGP_CASTEiJ_T0008178.1 MGP_CASTEiJ_G0006653.1 mouse_genomes_project 5 129334754 129392684 + 4933438B17Rik lincRNA lincRNA MGP_CASTEiJ_T0008179.1 MGP_CASTEiJ_G0006653.1 mouse_genomes_project 5 129334761 129348599 + 4933438B17Rik lincRNA lincRNA MGP_CASTEiJ_T0001399.1 MGP_CASTEiJ_G0001328.1 mouse_genomes_project 5 10737716 10739916 + TEC TEC MGP_CASTEiJ_T0014631.1 MGP_CASTEiJ_G0012794.1 mouse_genomes_project 5 124453075 124453397 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0072975.1 MGP_CASTEiJ_G0028889.1 mouse_genomes_project 5 99144172 99606853 - MGP_CASTEiJ_P0072975 protein_coding protein_coding MGP_CASTEiJ_T0072976.1 MGP_CASTEiJ_G0028889.1 mouse_genomes_project 5 99225907 99606870 - MGP_CASTEiJ_P0072976 protein_coding protein_coding MGP_CASTEiJ_T0072977.1 MGP_CASTEiJ_G0028889.1 mouse_genomes_project 5 99418397 99606873 - protein_coding retained_intron MGP_CASTEiJ_T0072978.1 MGP_CASTEiJ_G0028889.1 mouse_genomes_project 5 99553134 99606629 - protein_coding processed_transcript MGP_CASTEiJ_T0072979.1 MGP_CASTEiJ_G0028889.1 mouse_genomes_project 5 99601304 99606864 - MGP_CASTEiJ_P0072979 protein_coding protein_coding MGP_CASTEiJ_T0070148.1 MGP_CASTEiJ_G0028373.1 mouse_genomes_project 5 481058 521993 + MGP_CASTEiJ_P0070148 Pex1 protein_coding protein_coding MGP_CASTEiJ_T0070149.1 MGP_CASTEiJ_G0028373.1 mouse_genomes_project 5 481058 521995 + MGP_CASTEiJ_P0070149 Pex1 protein_coding protein_coding MGP_CASTEiJ_T0070150.1 MGP_CASTEiJ_G0028373.1 mouse_genomes_project 5 481191 491779 + MGP_CASTEiJ_P0070150 Pex1 protein_coding protein_coding MGP_CASTEiJ_T0070151.1 MGP_CASTEiJ_G0028373.1 mouse_genomes_project 5 481363 508796 + MGP_CASTEiJ_P0070151 Pex1 protein_coding protein_coding MGP_CASTEiJ_T0070152.1 MGP_CASTEiJ_G0028373.1 mouse_genomes_project 5 481381 521618 + MGP_CASTEiJ_P0070152 Pex1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070153.1 MGP_CASTEiJ_G0028373.1 mouse_genomes_project 5 490765 492038 + Pex1 protein_coding retained_intron MGP_CASTEiJ_T0070154.1 MGP_CASTEiJ_G0028373.1 mouse_genomes_project 5 492118 505435 + MGP_CASTEiJ_P0070154 Pex1 protein_coding protein_coding MGP_CASTEiJ_T0070155.1 MGP_CASTEiJ_G0028373.1 mouse_genomes_project 5 495471 502842 + Pex1 protein_coding retained_intron MGP_CASTEiJ_T0070156.1 MGP_CASTEiJ_G0028373.1 mouse_genomes_project 5 503613 509269 + MGP_CASTEiJ_P0070156 Pex1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070157.1 MGP_CASTEiJ_G0028373.1 mouse_genomes_project 5 504484 505481 + Pex1 protein_coding retained_intron MGP_CASTEiJ_T0070158.1 MGP_CASTEiJ_G0028373.1 mouse_genomes_project 5 508830 509233 + Pex1 protein_coding retained_intron MGP_CASTEiJ_T0070159.1 MGP_CASTEiJ_G0028373.1 mouse_genomes_project 5 511970 512608 + Pex1 protein_coding retained_intron MGP_CASTEiJ_T0070161.1 MGP_CASTEiJ_G0028373.1 mouse_genomes_project 5 519932 520673 + Pex1 protein_coding retained_intron MGP_CASTEiJ_T0070162.1 MGP_CASTEiJ_G0028373.1 mouse_genomes_project 5 520376 521724 + Pex1 protein_coding retained_intron MGP_CASTEiJ_T0070163.1 MGP_CASTEiJ_G0028373.1 mouse_genomes_project 5 520912 521581 + Pex1 protein_coding retained_intron MGP_CASTEiJ_T0004627.1 MGP_CASTEiJ_G0004004.1 mouse_genomes_project 5 103576540 103597544 - Gm42620 antisense antisense MGP_CASTEiJ_T0007998.1 MGP_CASTEiJ_G0006535.1 mouse_genomes_project 5 92071123 92073122 - Gm43688 lincRNA lincRNA MGP_CASTEiJ_T0014383.1 MGP_CASTEiJ_G0012546.1 mouse_genomes_project 5 19036793 19037480 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102350.1 MGP_CASTEiJ_G0039075.1 mouse_genomes_project 5 87083040 87083799 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0004606.1 MGP_CASTEiJ_G0003994.1 mouse_genomes_project 5 97976321 97979169 - A730035I17Rik antisense antisense MGP_CASTEiJ_T0004607.1 MGP_CASTEiJ_G0003994.1 mouse_genomes_project 5 97976337 97978395 - A730035I17Rik antisense antisense MGP_CASTEiJ_T0004608.1 MGP_CASTEiJ_G0003994.1 mouse_genomes_project 5 97977224 97978967 - A730035I17Rik antisense antisense MGP_CASTEiJ_T0004609.1 MGP_CASTEiJ_G0003994.1 mouse_genomes_project 5 97977647 97978398 - A730035I17Rik antisense antisense MGP_CASTEiJ_T0004610.1 MGP_CASTEiJ_G0003994.1 mouse_genomes_project 5 97978480 97979169 - A730035I17Rik antisense pseudogene MGP_CASTEiJ_T0008072.1 MGP_CASTEiJ_G0006587.1 mouse_genomes_project 5 111513320 111514925 + Gm42595 lincRNA lincRNA MGP_CASTEiJ_T0098956.1 MGP_CASTEiJ_G0035880.1 mouse_genomes_project 5 2311289 2313884 - Gm43728 sense_intronic sense_intronic MGP_CASTEiJ_T0072671.1 MGP_CASTEiJ_G0028809.1 mouse_genomes_project 5 88097823 88098362 + MGP_CASTEiJ_P0072671 Smr2 protein_coding protein_coding MGP_CASTEiJ_T0070166.1 MGP_CASTEiJ_G0028375.1 mouse_genomes_project 5 534678 559359 + MGP_CASTEiJ_P0070166 Tmbim7 protein_coding protein_coding MGP_CASTEiJ_T0070167.1 MGP_CASTEiJ_G0028375.1 mouse_genomes_project 5 541122 568849 + MGP_CASTEiJ_P0070167 Tmbim7 protein_coding protein_coding MGP_CASTEiJ_T0070168.1 MGP_CASTEiJ_G0028375.1 mouse_genomes_project 5 541297 553479 + Tmbim7 protein_coding retained_intron MGP_CASTEiJ_T0070169.1 MGP_CASTEiJ_G0028375.1 mouse_genomes_project 5 541298 568976 + MGP_CASTEiJ_P0070169 Tmbim7 protein_coding protein_coding MGP_CASTEiJ_T0070170.1 MGP_CASTEiJ_G0028375.1 mouse_genomes_project 5 548067 569760 + MGP_CASTEiJ_P0070170 Tmbim7 protein_coding protein_coding MGP_CASTEiJ_T0004577.1 MGP_CASTEiJ_G0003969.1 mouse_genomes_project 5 66260611 66270868 + Gm26756 antisense antisense MGP_CASTEiJ_T0007950.1 MGP_CASTEiJ_G0006496.1 mouse_genomes_project 5 63208776 63210494 + Gm42565 lincRNA lincRNA MGP_CASTEiJ_T0070794.1 MGP_CASTEiJ_G0028487.1 mouse_genomes_project 5 26969696 26969996 - MGP_CASTEiJ_P0070794 Gm5129 protein_coding protein_coding MGP_CASTEiJ_T0010437.1 MGP_CASTEiJ_G0008625.1 mouse_genomes_project 5 143863936 143864007 + Mir7038 miRNA miRNA MGP_CASTEiJ_T0004691.1 MGP_CASTEiJ_G0004052.1 mouse_genomes_project 5 125423806 125435240 - Gm15860 antisense antisense MGP_CASTEiJ_T0004692.1 MGP_CASTEiJ_G0004052.1 mouse_genomes_project 5 125425396 125435342 - Gm15860 antisense antisense MGP_CASTEiJ_T0004693.1 MGP_CASTEiJ_G0004052.1 mouse_genomes_project 5 125425529 125432832 - Gm15860 antisense antisense MGP_CASTEiJ_T0073156.1 MGP_CASTEiJ_G0028925.1 mouse_genomes_project 5 104570861 104616067 + MGP_CASTEiJ_P0073156 Pkd2 protein_coding protein_coding MGP_CASTEiJ_T0073157.1 MGP_CASTEiJ_G0028925.1 mouse_genomes_project 5 104570981 104600353 + Pkd2 protein_coding processed_transcript MGP_CASTEiJ_T0073158.1 MGP_CASTEiJ_G0028925.1 mouse_genomes_project 5 104602802 104611611 + Pkd2 protein_coding retained_intron MGP_CASTEiJ_T0007955.1 MGP_CASTEiJ_G0006500.1 mouse_genomes_project 5 71589206 71591340 + 4933408A14Rik lincRNA lincRNA MGP_CASTEiJ_T0007915.1 MGP_CASTEiJ_G0006466.1 mouse_genomes_project 5 41049476 41051648 - Gm43020 lincRNA lincRNA MGP_CASTEiJ_T0008049.1 MGP_CASTEiJ_G0006573.1 mouse_genomes_project 5 106906579 106908405 + Gm42916 lincRNA lincRNA MGP_CASTEiJ_T0070239.1 MGP_CASTEiJ_G0028387.1 mouse_genomes_project 5 2542365 2563814 - MGP_CASTEiJ_P0070239 Gtpbp10 protein_coding protein_coding MGP_CASTEiJ_T0070240.1 MGP_CASTEiJ_G0028387.1 mouse_genomes_project 5 2544132 2563789 - MGP_CASTEiJ_P0070240 Gtpbp10 protein_coding protein_coding MGP_CASTEiJ_T0070241.1 MGP_CASTEiJ_G0028387.1 mouse_genomes_project 5 2546572 2548915 - Gtpbp10 protein_coding retained_intron MGP_CASTEiJ_T0070242.1 MGP_CASTEiJ_G0028387.1 mouse_genomes_project 5 2546592 2548169 - Gtpbp10 protein_coding retained_intron MGP_CASTEiJ_T0070243.1 MGP_CASTEiJ_G0028387.1 mouse_genomes_project 5 2547073 2561521 - MGP_CASTEiJ_P0070243 Gtpbp10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070244.1 MGP_CASTEiJ_G0028387.1 mouse_genomes_project 5 2548789 2563737 - MGP_CASTEiJ_P0070244 Gtpbp10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070245.1 MGP_CASTEiJ_G0028387.1 mouse_genomes_project 5 2548833 2560034 - Gtpbp10 protein_coding retained_intron MGP_CASTEiJ_T0070246.1 MGP_CASTEiJ_G0028387.1 mouse_genomes_project 5 2548870 2551976 - Gtpbp10 protein_coding retained_intron MGP_CASTEiJ_T0070247.1 MGP_CASTEiJ_G0028387.1 mouse_genomes_project 5 2551082 2563758 - MGP_CASTEiJ_P0070247 Gtpbp10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070248.1 MGP_CASTEiJ_G0028387.1 mouse_genomes_project 5 2563151 2563792 - MGP_CASTEiJ_P0070248 Gtpbp10 protein_coding protein_coding MGP_CASTEiJ_T0070481.1 MGP_CASTEiJ_G0028426.1 mouse_genomes_project 5 18511565 18692252 - MGP_CASTEiJ_P0070481 Fbxl13 protein_coding protein_coding MGP_CASTEiJ_T0070482.1 MGP_CASTEiJ_G0028426.1 mouse_genomes_project 5 18519466 18692234 - Fbxl13 protein_coding retained_intron MGP_CASTEiJ_T0070483.1 MGP_CASTEiJ_G0028426.1 mouse_genomes_project 5 18550841 18692204 - MGP_CASTEiJ_P0070483 Fbxl13 protein_coding protein_coding MGP_CASTEiJ_T0070486.1 MGP_CASTEiJ_G0028426.1 mouse_genomes_project 5 18690188 18692281 - Fbxl13 protein_coding retained_intron MGP_CASTEiJ_T0014653.1 MGP_CASTEiJ_G0012816.1 mouse_genomes_project 5 140961303 140962055 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102347.1 MGP_CASTEiJ_G0039072.1 mouse_genomes_project 5 86848497 86885293 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0001567.1 MGP_CASTEiJ_G0001491.1 mouse_genomes_project 5 63042968 63043922 + TEC TEC MGP_CASTEiJ_T0076169.1 MGP_CASTEiJ_G0029495.1 mouse_genomes_project 5 153200051 153264725 - MGP_CASTEiJ_P0076169 Katnal1 protein_coding protein_coding MGP_CASTEiJ_T0076170.1 MGP_CASTEiJ_G0029495.1 mouse_genomes_project 5 153204199 153207719 - Katnal1 protein_coding retained_intron MGP_CASTEiJ_T0076171.1 MGP_CASTEiJ_G0029495.1 mouse_genomes_project 5 153215066 153265078 - Katnal1 protein_coding processed_transcript MGP_CASTEiJ_T0076172.1 MGP_CASTEiJ_G0029495.1 mouse_genomes_project 5 153226356 153265397 - MGP_CASTEiJ_P0076172 Katnal1 protein_coding protein_coding MGP_CASTEiJ_T0076174.1 MGP_CASTEiJ_G0029495.1 mouse_genomes_project 5 153237183 153264706 - MGP_CASTEiJ_P0076174 Katnal1 protein_coding protein_coding MGP_CASTEiJ_T0076175.1 MGP_CASTEiJ_G0029495.1 mouse_genomes_project 5 153260697 153264743 - Katnal1 protein_coding processed_transcript MGP_CASTEiJ_T0071912.1 MGP_CASTEiJ_G0028664.1 mouse_genomes_project 5 51926470 51959595 + MGP_CASTEiJ_P0071912 Tbc1d19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071913.1 MGP_CASTEiJ_G0028664.1 mouse_genomes_project 5 51926491 52017111 + MGP_CASTEiJ_P0071913 Tbc1d19 protein_coding protein_coding MGP_CASTEiJ_T0071914.1 MGP_CASTEiJ_G0028664.1 mouse_genomes_project 5 51926512 51952796 + Tbc1d19 protein_coding processed_transcript MGP_CASTEiJ_T0071915.1 MGP_CASTEiJ_G0028664.1 mouse_genomes_project 5 51926513 51948594 + Tbc1d19 protein_coding retained_intron MGP_CASTEiJ_T0071916.1 MGP_CASTEiJ_G0028664.1 mouse_genomes_project 5 51926518 52017109 + MGP_CASTEiJ_P0071916 Tbc1d19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071917.1 MGP_CASTEiJ_G0028664.1 mouse_genomes_project 5 51926543 51954337 + MGP_CASTEiJ_P0071917 Tbc1d19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0071918.1 MGP_CASTEiJ_G0028664.1 mouse_genomes_project 5 51950418 51954279 + Tbc1d19 protein_coding retained_intron MGP_CASTEiJ_T0071919.1 MGP_CASTEiJ_G0028664.1 mouse_genomes_project 5 51952785 51963231 + Tbc1d19 protein_coding processed_transcript MGP_CASTEiJ_T0071920.1 MGP_CASTEiJ_G0028664.1 mouse_genomes_project 5 52004245 52016883 + Tbc1d19 protein_coding processed_transcript MGP_CASTEiJ_T0072586.1 MGP_CASTEiJ_G0028782.1 mouse_genomes_project 5 86621763 86655133 + MGP_CASTEiJ_P0072586 Ythdc1 protein_coding protein_coding MGP_CASTEiJ_T0072587.1 MGP_CASTEiJ_G0028782.1 mouse_genomes_project 5 86621775 86655138 + MGP_CASTEiJ_P0072587 Ythdc1 protein_coding protein_coding MGP_CASTEiJ_T0072588.1 MGP_CASTEiJ_G0028782.1 mouse_genomes_project 5 86622038 86655138 + MGP_CASTEiJ_P0072588 Ythdc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0072589.1 MGP_CASTEiJ_G0028782.1 mouse_genomes_project 5 86622106 86647104 + MGP_CASTEiJ_P0072589 Ythdc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0072590.1 MGP_CASTEiJ_G0028782.1 mouse_genomes_project 5 86622106 86655136 + MGP_CASTEiJ_P0072590 Ythdc1 protein_coding protein_coding MGP_CASTEiJ_T0072591.1 MGP_CASTEiJ_G0028782.1 mouse_genomes_project 5 86623945 86627260 + Ythdc1 protein_coding retained_intron MGP_CASTEiJ_T0072592.1 MGP_CASTEiJ_G0028782.1 mouse_genomes_project 5 86632818 86655138 + Ythdc1 protein_coding retained_intron MGP_CASTEiJ_T0072593.1 MGP_CASTEiJ_G0028782.1 mouse_genomes_project 5 86640342 86645368 + Ythdc1 protein_coding retained_intron MGP_CASTEiJ_T0072594.1 MGP_CASTEiJ_G0028782.1 mouse_genomes_project 5 86646352 86652763 + Ythdc1 protein_coding processed_transcript MGP_CASTEiJ_T0072595.1 MGP_CASTEiJ_G0028782.1 mouse_genomes_project 5 86648797 86655136 + Ythdc1 protein_coding retained_intron MGP_CASTEiJ_T0072210.1 MGP_CASTEiJ_G0028713.1 mouse_genomes_project 5 69646920 69741665 - MGP_CASTEiJ_P0072210 Gabrg1 protein_coding protein_coding MGP_CASTEiJ_T0072211.1 MGP_CASTEiJ_G0028713.1 mouse_genomes_project 5 69648964 69741379 - MGP_CASTEiJ_P0072211 Gabrg1 protein_coding protein_coding MGP_CASTEiJ_T0072212.1 MGP_CASTEiJ_G0028713.1 mouse_genomes_project 5 69664164 69741362 - Gabrg1 protein_coding retained_intron MGP_CASTEiJ_T0072213.1 MGP_CASTEiJ_G0028713.1 mouse_genomes_project 5 69708092 69741362 - Gabrg1 protein_coding retained_intron MGP_CASTEiJ_T0004530.1 MGP_CASTEiJ_G0003931.1 mouse_genomes_project 5 29867437 29948850 - antisense antisense MGP_CASTEiJ_T0070209.1 MGP_CASTEiJ_G0028382.1 mouse_genomes_project 5 1012638 1037604 - MGP_CASTEiJ_P0070209 Cyp51 protein_coding protein_coding MGP_CASTEiJ_T0070210.1 MGP_CASTEiJ_G0028382.1 mouse_genomes_project 5 1014617 1037201 - Cyp51 protein_coding processed_transcript MGP_CASTEiJ_T0070211.1 MGP_CASTEiJ_G0028382.1 mouse_genomes_project 5 1032138 1036239 - Cyp51 protein_coding retained_intron MGP_CASTEiJ_T0070212.1 MGP_CASTEiJ_G0028382.1 mouse_genomes_project 5 1033916 1037279 - Cyp51 protein_coding retained_intron MGP_CASTEiJ_T0072610.1 MGP_CASTEiJ_G0028794.1 mouse_genomes_project 5 87365690 87396040 - MGP_CASTEiJ_P0072610 protein_coding protein_coding MGP_CASTEiJ_T0008175.1 MGP_CASTEiJ_G0006651.1 mouse_genomes_project 5 129013867 129016865 - Gm43754 lincRNA lincRNA MGP_CASTEiJ_T0001700.1 MGP_CASTEiJ_G0001623.1 mouse_genomes_project 5 113331094 113331461 - TEC TEC MGP_CASTEiJ_T0073489.1 MGP_CASTEiJ_G0028995.1 mouse_genomes_project 5 111505353 111512438 + MGP_CASTEiJ_P0073489 Ddx51 protein_coding unknown_likely_coding MGP_CASTEiJ_T0073490.1 MGP_CASTEiJ_G0028995.1 mouse_genomes_project 5 111505365 111512434 + MGP_CASTEiJ_P0073490 Ddx51 protein_coding protein_coding MGP_CASTEiJ_T0073491.1 MGP_CASTEiJ_G0028995.1 mouse_genomes_project 5 111505460 111507079 + Ddx51 protein_coding retained_intron MGP_CASTEiJ_T0073492.1 MGP_CASTEiJ_G0028995.1 mouse_genomes_project 5 111507070 111507838 + Ddx51 protein_coding retained_intron MGP_CASTEiJ_T0073493.1 MGP_CASTEiJ_G0028995.1 mouse_genomes_project 5 111508567 111509043 + Ddx51 protein_coding retained_intron MGP_CASTEiJ_T0073494.1 MGP_CASTEiJ_G0028995.1 mouse_genomes_project 5 111508794 111509804 + MGP_CASTEiJ_P0073494 Ddx51 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001831.1 MGP_CASTEiJ_G0001752.1 mouse_genomes_project 5 147110687 147113445 + TEC TEC MGP_CASTEiJ_T0001660.1 MGP_CASTEiJ_G0001583.1 mouse_genomes_project 5 96648042 96648584 - TEC TEC MGP_CASTEiJ_T0073789.1 MGP_CASTEiJ_G0029049.1 mouse_genomes_project 5 115941753 115974098 + MGP_CASTEiJ_P0073789 Ankrd13a protein_coding protein_coding MGP_CASTEiJ_T0073790.1 MGP_CASTEiJ_G0029049.1 mouse_genomes_project 5 115942021 115974491 + Ankrd13a protein_coding processed_transcript MGP_CASTEiJ_T0073791.1 MGP_CASTEiJ_G0029049.1 mouse_genomes_project 5 115953064 115971889 + MGP_CASTEiJ_P0073791 Ankrd13a protein_coding protein_coding MGP_CASTEiJ_T0073792.1 MGP_CASTEiJ_G0029049.1 mouse_genomes_project 5 115962714 115974491 + Ankrd13a protein_coding processed_transcript MGP_CASTEiJ_T0073793.1 MGP_CASTEiJ_G0029049.1 mouse_genomes_project 5 115966459 115974491 + Ankrd13a protein_coding processed_transcript MGP_CASTEiJ_T0073794.1 MGP_CASTEiJ_G0029049.1 mouse_genomes_project 5 115966573 115968611 + Ankrd13a protein_coding retained_intron MGP_CASTEiJ_T0073590.1 MGP_CASTEiJ_G0029014.1 mouse_genomes_project 5 113411777 113414102 + MGP_CASTEiJ_P0073590 Gm6588 protein_coding protein_coding MGP_CASTEiJ_T0075938.1 MGP_CASTEiJ_G0029448.1 mouse_genomes_project 5 147918920 147923068 + MGP_CASTEiJ_P0075938 Bhlha15 protein_coding protein_coding MGP_CASTEiJ_T0098965.1 MGP_CASTEiJ_G0035889.1 mouse_genomes_project 5 92937878 92939098 + Gm20500 sense_intronic sense_intronic MGP_CASTEiJ_T0072188.1 MGP_CASTEiJ_G0028708.1 mouse_genomes_project 5 66892808 67021087 + MGP_CASTEiJ_P0072188 Grxcr1 protein_coding protein_coding MGP_CASTEiJ_T0074298.1 MGP_CASTEiJ_G0029147.1 mouse_genomes_project 5 124241464 124272258 - MGP_CASTEiJ_P0074298 Tctn1 protein_coding protein_coding MGP_CASTEiJ_T0074299.1 MGP_CASTEiJ_G0029147.1 mouse_genomes_project 5 124246825 124272258 - MGP_CASTEiJ_P0074299 Tctn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0074300.1 MGP_CASTEiJ_G0029147.1 mouse_genomes_project 5 124251110 124258462 - Tctn1 protein_coding processed_transcript MGP_CASTEiJ_T0074301.1 MGP_CASTEiJ_G0029147.1 mouse_genomes_project 5 124253976 124262147 - Tctn1 protein_coding retained_intron MGP_CASTEiJ_T0074302.1 MGP_CASTEiJ_G0029147.1 mouse_genomes_project 5 124259107 124272213 - Tctn1 protein_coding retained_intron MGP_CASTEiJ_T0014497.1 MGP_CASTEiJ_G0012660.1 mouse_genomes_project 5 62543674 62544169 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0075137.1 MGP_CASTEiJ_G0029285.1 mouse_genomes_project 5 138239165 138260142 - MGP_CASTEiJ_P0075137 Pom121 protein_coding protein_coding MGP_CASTEiJ_T0070370.1 MGP_CASTEiJ_G0028405.1 mouse_genomes_project 5 6266655 6489907 + MGP_CASTEiJ_P0070370 9330182L06Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070371.1 MGP_CASTEiJ_G0028405.1 mouse_genomes_project 5 6266664 6472786 + MGP_CASTEiJ_P0070371 9330182L06Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070372.1 MGP_CASTEiJ_G0028405.1 mouse_genomes_project 5 6266667 6417534 + 9330182L06Rik protein_coding retained_intron MGP_CASTEiJ_T0070373.1 MGP_CASTEiJ_G0028405.1 mouse_genomes_project 5 6266669 6490888 + MGP_CASTEiJ_P0070373 9330182L06Rik protein_coding protein_coding MGP_CASTEiJ_T0070374.1 MGP_CASTEiJ_G0028405.1 mouse_genomes_project 5 6266669 6473170 + MGP_CASTEiJ_P0070374 9330182L06Rik protein_coding protein_coding MGP_CASTEiJ_T0070375.1 MGP_CASTEiJ_G0028405.1 mouse_genomes_project 5 6266686 6491996 + MGP_CASTEiJ_P0070375 9330182L06Rik protein_coding protein_coding MGP_CASTEiJ_T0070376.1 MGP_CASTEiJ_G0028405.1 mouse_genomes_project 5 6266712 6470664 + MGP_CASTEiJ_P0070376 9330182L06Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070377.1 MGP_CASTEiJ_G0028405.1 mouse_genomes_project 5 6426769 6431544 + 9330182L06Rik protein_coding retained_intron MGP_CASTEiJ_T0076074.1 MGP_CASTEiJ_G0029477.1 mouse_genomes_project 5 150980185 150984348 + MGP_CASTEiJ_P0076074 Rpl21 protein_coding protein_coding MGP_CASTEiJ_T0076075.1 MGP_CASTEiJ_G0029477.1 mouse_genomes_project 5 150980441 150981898 + Rpl21 protein_coding retained_intron MGP_CASTEiJ_T0076076.1 MGP_CASTEiJ_G0029477.1 mouse_genomes_project 5 150980490 150983286 + MGP_CASTEiJ_P0076076 Rpl21 protein_coding protein_coding MGP_CASTEiJ_T0076077.1 MGP_CASTEiJ_G0029477.1 mouse_genomes_project 5 150980497 150983287 + MGP_CASTEiJ_P0076077 Rpl21 protein_coding protein_coding MGP_CASTEiJ_T0076078.1 MGP_CASTEiJ_G0029477.1 mouse_genomes_project 5 150981480 150982257 + Rpl21 protein_coding retained_intron MGP_CASTEiJ_T0076079.1 MGP_CASTEiJ_G0029477.1 mouse_genomes_project 5 150982498 150983287 + Rpl21 protein_coding retained_intron MGP_CASTEiJ_T0071684.1 MGP_CASTEiJ_G0028627.1 mouse_genomes_project 5 39517582 39576351 - MGP_CASTEiJ_P0071684 Bod1l protein_coding protein_coding MGP_CASTEiJ_T0071685.1 MGP_CASTEiJ_G0028627.1 mouse_genomes_project 5 39517582 39576351 - MGP_CASTEiJ_P0071685 Bod1l protein_coding protein_coding MGP_CASTEiJ_T0071686.1 MGP_CASTEiJ_G0028627.1 mouse_genomes_project 5 39521688 39576084 - MGP_CASTEiJ_P0071686 Bod1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0071687.1 MGP_CASTEiJ_G0028627.1 mouse_genomes_project 5 39553100 39556771 - Bod1l protein_coding processed_transcript MGP_CASTEiJ_T0071688.1 MGP_CASTEiJ_G0028627.1 mouse_genomes_project 5 39553992 39576328 - Bod1l protein_coding retained_intron MGP_CASTEiJ_T0072416.1 MGP_CASTEiJ_G0028749.1 mouse_genomes_project 5 75394176 75420186 + MGP_CASTEiJ_P0072416 Tmem165 protein_coding protein_coding MGP_CASTEiJ_T0072417.1 MGP_CASTEiJ_G0028749.1 mouse_genomes_project 5 75394254 75407379 + Tmem165 protein_coding processed_transcript MGP_CASTEiJ_T0072418.1 MGP_CASTEiJ_G0028749.1 mouse_genomes_project 5 75409838 75416768 + Tmem165 protein_coding retained_intron MGP_CASTEiJ_T0072419.1 MGP_CASTEiJ_G0028749.1 mouse_genomes_project 5 75415732 75417649 + Tmem165 protein_coding processed_transcript MGP_CASTEiJ_T0073595.1 MGP_CASTEiJ_G0029016.1 mouse_genomes_project 5 113908680 114020665 - MGP_CASTEiJ_P0073595 Adrbk2 protein_coding protein_coding MGP_CASTEiJ_T0073596.1 MGP_CASTEiJ_G0029016.1 mouse_genomes_project 5 113910794 114020665 - MGP_CASTEiJ_P0073596 Adrbk2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073597.1 MGP_CASTEiJ_G0029016.1 mouse_genomes_project 5 113914289 113922585 - Adrbk2 protein_coding retained_intron MGP_CASTEiJ_T0073598.1 MGP_CASTEiJ_G0029016.1 mouse_genomes_project 5 113915886 114020942 - MGP_CASTEiJ_P0073598 Adrbk2 protein_coding protein_coding MGP_CASTEiJ_T0073599.1 MGP_CASTEiJ_G0029016.1 mouse_genomes_project 5 113918187 113924038 - Adrbk2 protein_coding retained_intron MGP_CASTEiJ_T0073600.1 MGP_CASTEiJ_G0029016.1 mouse_genomes_project 5 113958619 114020654 - MGP_CASTEiJ_P0073600 Adrbk2 protein_coding protein_coding MGP_CASTEiJ_T0070795.1 MGP_CASTEiJ_G0028488.1 mouse_genomes_project 5 26969747 27027098 + MGP_CASTEiJ_P0070795 Dnajb6 protein_coding protein_coding MGP_CASTEiJ_T0070796.1 MGP_CASTEiJ_G0028488.1 mouse_genomes_project 5 26970048 27026260 + MGP_CASTEiJ_P0070796 Dnajb6 protein_coding protein_coding MGP_CASTEiJ_T0070797.1 MGP_CASTEiJ_G0028488.1 mouse_genomes_project 5 26970054 26996503 + MGP_CASTEiJ_P0070797 Dnajb6 protein_coding protein_coding MGP_CASTEiJ_T0070798.1 MGP_CASTEiJ_G0028488.1 mouse_genomes_project 5 26970083 26974058 + Dnajb6 protein_coding processed_transcript MGP_CASTEiJ_T0070799.1 MGP_CASTEiJ_G0028488.1 mouse_genomes_project 5 26970092 27063793 + MGP_CASTEiJ_P0070799 Dnajb6 protein_coding protein_coding MGP_CASTEiJ_T0070800.1 MGP_CASTEiJ_G0028488.1 mouse_genomes_project 5 26972213 26986158 + MGP_CASTEiJ_P0070800 Dnajb6 protein_coding protein_coding MGP_CASTEiJ_T0070801.1 MGP_CASTEiJ_G0028488.1 mouse_genomes_project 5 26988149 26990201 + Dnajb6 protein_coding retained_intron MGP_CASTEiJ_T0070802.1 MGP_CASTEiJ_G0028488.1 mouse_genomes_project 5 26992661 26996494 + Dnajb6 protein_coding processed_transcript MGP_CASTEiJ_T0070803.1 MGP_CASTEiJ_G0028488.1 mouse_genomes_project 5 27004109 27005837 + Dnajb6 protein_coding retained_intron MGP_CASTEiJ_T0070804.1 MGP_CASTEiJ_G0028488.1 mouse_genomes_project 5 27004403 27021587 + MGP_CASTEiJ_P0070804 Dnajb6 protein_coding protein_coding MGP_CASTEiJ_T0001533.1 MGP_CASTEiJ_G0001458.1 mouse_genomes_project 5 49885273 49886503 - TEC TEC MGP_CASTEiJ_T0076211.1 MGP_CASTEiJ_G0029502.1 mouse_genomes_project 5 153947662 154042789 + MGP_CASTEiJ_P0076211 Wdr95 protein_coding protein_coding MGP_CASTEiJ_T0076212.1 MGP_CASTEiJ_G0029502.1 mouse_genomes_project 5 153950574 153990262 + Wdr95 protein_coding retained_intron MGP_CASTEiJ_T0076213.1 MGP_CASTEiJ_G0029502.1 mouse_genomes_project 5 153950580 154030956 + MGP_CASTEiJ_P0076213 Wdr95 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076214.1 MGP_CASTEiJ_G0029502.1 mouse_genomes_project 5 153950622 153991349 + Wdr95 protein_coding retained_intron MGP_CASTEiJ_T0076215.1 MGP_CASTEiJ_G0029502.1 mouse_genomes_project 5 153950622 154042789 + MGP_CASTEiJ_P0076215 Wdr95 protein_coding protein_coding MGP_CASTEiJ_T0076216.1 MGP_CASTEiJ_G0029502.1 mouse_genomes_project 5 153958934 153990262 + Wdr95 protein_coding retained_intron MGP_CASTEiJ_T0076217.1 MGP_CASTEiJ_G0029502.1 mouse_genomes_project 5 154010108 154016433 + Wdr95 protein_coding retained_intron MGP_CASTEiJ_T0071198.1 MGP_CASTEiJ_G0028548.1 mouse_genomes_project 5 30443495 30445680 + protein_coding retained_intron MGP_CASTEiJ_T0010363.1 MGP_CASTEiJ_G0008551.1 mouse_genomes_project 5 4880780 4880893 + Gm22196 miRNA miRNA MGP_CASTEiJ_T0014408.1 MGP_CASTEiJ_G0012571.1 mouse_genomes_project 5 23746471 23746583 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007876.1 MGP_CASTEiJ_G0006442.1 mouse_genomes_project 5 26579021 26591883 + 4632411P08Rik lincRNA lincRNA MGP_CASTEiJ_T0098978.1 MGP_CASTEiJ_G0035901.1 mouse_genomes_project 5 139853189 139859584 - Gm20485 sense_intronic sense_intronic MGP_CASTEiJ_T0001785.1 MGP_CASTEiJ_G0001707.1 mouse_genomes_project 5 133650873 133652511 - TEC TEC MGP_CASTEiJ_T0075559.1 MGP_CASTEiJ_G0029368.1 mouse_genomes_project 5 141434247 141440600 - MGP_CASTEiJ_P0075559 protein_coding protein_coding MGP_CASTEiJ_T0075560.1 MGP_CASTEiJ_G0029368.1 mouse_genomes_project 5 141434249 141440580 - protein_coding retained_intron MGP_CASTEiJ_T0075561.1 MGP_CASTEiJ_G0029368.1 mouse_genomes_project 5 141434249 141440557 - protein_coding retained_intron MGP_CASTEiJ_T0075562.1 MGP_CASTEiJ_G0029368.1 mouse_genomes_project 5 141434249 141440577 - MGP_CASTEiJ_P0075562 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075563.1 MGP_CASTEiJ_G0029368.1 mouse_genomes_project 5 141434252 141440560 - MGP_CASTEiJ_P0075563 protein_coding protein_coding MGP_CASTEiJ_T0075564.1 MGP_CASTEiJ_G0029368.1 mouse_genomes_project 5 141436117 141438832 - protein_coding retained_intron MGP_CASTEiJ_T0075565.1 MGP_CASTEiJ_G0029368.1 mouse_genomes_project 5 141437230 141440558 - protein_coding processed_transcript MGP_CASTEiJ_T0008124.1 MGP_CASTEiJ_G0006619.1 mouse_genomes_project 5 118832495 118836859 + Gm15728 lincRNA lincRNA MGP_CASTEiJ_T0008125.1 MGP_CASTEiJ_G0006619.1 mouse_genomes_project 5 118832571 118833944 + Gm15728 lincRNA lincRNA MGP_CASTEiJ_T0072775.1 MGP_CASTEiJ_G0028843.1 mouse_genomes_project 5 91137019 91147342 + MGP_CASTEiJ_P0072775 Epgn protein_coding protein_coding MGP_CASTEiJ_T0072776.1 MGP_CASTEiJ_G0028843.1 mouse_genomes_project 5 91137019 91148344 + MGP_CASTEiJ_P0072776 Epgn protein_coding protein_coding MGP_CASTEiJ_T0008173.1 MGP_CASTEiJ_G0006650.1 mouse_genomes_project 5 128995600 129025989 + Gm43757 lincRNA lincRNA MGP_CASTEiJ_T0008174.1 MGP_CASTEiJ_G0006650.1 mouse_genomes_project 5 128995622 129000511 + Gm43757 lincRNA lincRNA MGP_CASTEiJ_T0004694.1 MGP_CASTEiJ_G0004053.1 mouse_genomes_project 5 125489079 125493395 - Gm15747 antisense antisense MGP_CASTEiJ_T0004695.1 MGP_CASTEiJ_G0004053.1 mouse_genomes_project 5 125489090 125490499 - Gm15747 antisense antisense MGP_CASTEiJ_T0098953.1 MGP_CASTEiJ_G0035877.1 mouse_genomes_project 5 1832783 1834705 - Gm43111 sense_intronic sense_intronic MGP_CASTEiJ_T0071656.1 MGP_CASTEiJ_G0028621.1 mouse_genomes_project 5 36200605 36237058 - MGP_CASTEiJ_P0071656 Wdr1 protein_coding protein_coding MGP_CASTEiJ_T0071657.1 MGP_CASTEiJ_G0028621.1 mouse_genomes_project 5 36201370 36203900 - Wdr1 protein_coding retained_intron MGP_CASTEiJ_T0071658.1 MGP_CASTEiJ_G0028621.1 mouse_genomes_project 5 36201511 36203788 - Wdr1 protein_coding retained_intron MGP_CASTEiJ_T0071659.1 MGP_CASTEiJ_G0028621.1 mouse_genomes_project 5 36202968 36203624 - Wdr1 protein_coding retained_intron MGP_CASTEiJ_T0071660.1 MGP_CASTEiJ_G0028621.1 mouse_genomes_project 5 36203741 36205768 - Wdr1 protein_coding processed_transcript MGP_CASTEiJ_T0071661.1 MGP_CASTEiJ_G0028621.1 mouse_genomes_project 5 36212395 36237058 - MGP_CASTEiJ_P0071661 Wdr1 protein_coding protein_coding MGP_CASTEiJ_T0071662.1 MGP_CASTEiJ_G0028621.1 mouse_genomes_project 5 36215472 36236802 - Wdr1 protein_coding retained_intron MGP_CASTEiJ_T0071663.1 MGP_CASTEiJ_G0028621.1 mouse_genomes_project 5 36220981 36238476 - Wdr1 protein_coding processed_transcript MGP_CASTEiJ_T0071664.1 MGP_CASTEiJ_G0028621.1 mouse_genomes_project 5 36226528 36237058 - Wdr1 protein_coding retained_intron MGP_CASTEiJ_T0071665.1 MGP_CASTEiJ_G0028621.1 mouse_genomes_project 5 36232933 36236795 - Wdr1 protein_coding retained_intron MGP_CASTEiJ_T0071666.1 MGP_CASTEiJ_G0028621.1 mouse_genomes_project 5 36236160 36236827 - Wdr1 protein_coding retained_intron MGP_CASTEiJ_T0073451.1 MGP_CASTEiJ_G0028988.1 mouse_genomes_project 5 111088126 111099853 - MGP_CASTEiJ_P0073451 Pxmp2 protein_coding protein_coding MGP_CASTEiJ_T0073452.1 MGP_CASTEiJ_G0028988.1 mouse_genomes_project 5 111088139 111099688 - MGP_CASTEiJ_P0073452 Pxmp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0073453.1 MGP_CASTEiJ_G0028988.1 mouse_genomes_project 5 111094535 111099669 - Pxmp2 protein_coding processed_transcript MGP_CASTEiJ_T0073454.1 MGP_CASTEiJ_G0028988.1 mouse_genomes_project 5 111097221 111099786 - Pxmp2 protein_coding retained_intron MGP_CASTEiJ_T0070352.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6113040 6157350 - MGP_CASTEiJ_P0070352 Dmtf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070353.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6113041 6157357 - MGP_CASTEiJ_P0070353 Dmtf1 protein_coding protein_coding MGP_CASTEiJ_T0070354.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6113044 6157380 - MGP_CASTEiJ_P0070354 Dmtf1 protein_coding protein_coding MGP_CASTEiJ_T0070355.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6113045 6157390 - MGP_CASTEiJ_P0070355 Dmtf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070356.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6113045 6157383 - MGP_CASTEiJ_P0070356 Dmtf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070357.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6113049 6148689 - MGP_CASTEiJ_P0070357 Dmtf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070358.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6113049 6157374 - MGP_CASTEiJ_P0070358 Dmtf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070359.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6113242 6157302 - MGP_CASTEiJ_P0070359 Dmtf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070360.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6113971 6114908 - Dmtf1 protein_coding retained_intron MGP_CASTEiJ_T0070361.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6115630 6121225 - MGP_CASTEiJ_P0070361 Dmtf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070362.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6116234 6157374 - Dmtf1 protein_coding processed_transcript MGP_CASTEiJ_T0070363.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6124014 6157368 - Dmtf1 protein_coding retained_intron MGP_CASTEiJ_T0070364.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6125929 6157347 - MGP_CASTEiJ_P0070364 Dmtf1 protein_coding protein_coding MGP_CASTEiJ_T0070365.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6127201 6147583 - MGP_CASTEiJ_P0070365 Dmtf1 protein_coding protein_coding MGP_CASTEiJ_T0070366.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6135602 6157365 - Dmtf1 protein_coding retained_intron MGP_CASTEiJ_T0070367.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6141920 6157380 - Dmtf1 protein_coding retained_intron MGP_CASTEiJ_T0070368.1 MGP_CASTEiJ_G0028404.1 mouse_genomes_project 5 6145989 6148479 - MGP_CASTEiJ_P0070368 Dmtf1 protein_coding protein_coding MGP_CASTEiJ_T0075847.1 MGP_CASTEiJ_G0029427.1 mouse_genomes_project 5 146939618 146952138 + MGP_CASTEiJ_P0075847 Zfp12 protein_coding protein_coding MGP_CASTEiJ_T0075848.1 MGP_CASTEiJ_G0029427.1 mouse_genomes_project 5 146939629 146953024 + MGP_CASTEiJ_P0075848 Zfp12 protein_coding protein_coding MGP_CASTEiJ_T0075849.1 MGP_CASTEiJ_G0029427.1 mouse_genomes_project 5 146939702 146952146 + MGP_CASTEiJ_P0075849 Zfp12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075850.1 MGP_CASTEiJ_G0029427.1 mouse_genomes_project 5 146940234 146944326 + MGP_CASTEiJ_P0075850 Zfp12 protein_coding protein_coding MGP_CASTEiJ_T0075851.1 MGP_CASTEiJ_G0029427.1 mouse_genomes_project 5 146944284 146948820 + Zfp12 protein_coding processed_transcript MGP_CASTEiJ_T0001608.1 MGP_CASTEiJ_G0001532.1 mouse_genomes_project 5 66704043 66705354 - TEC TEC MGP_CASTEiJ_T0001575.1 MGP_CASTEiJ_G0001499.1 mouse_genomes_project 5 64193931 64197946 - TEC TEC MGP_CASTEiJ_T0071719.1 MGP_CASTEiJ_G0028634.1 mouse_genomes_project 5 41583244 41629165 + MGP_CASTEiJ_P0071719 Cd38 protein_coding protein_coding MGP_CASTEiJ_T0071720.1 MGP_CASTEiJ_G0028634.1 mouse_genomes_project 5 41583551 41584432 + Cd38 protein_coding retained_intron MGP_CASTEiJ_T0014423.1 MGP_CASTEiJ_G0012586.1 mouse_genomes_project 5 28311755 28316912 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001389.1 MGP_CASTEiJ_G0001318.1 mouse_genomes_project 5 5797071 5797349 + TEC TEC MGP_CASTEiJ_T0001519.1 MGP_CASTEiJ_G0001444.1 mouse_genomes_project 5 47018598 47022781 - TEC TEC MGP_CASTEiJ_T0001495.1 MGP_CASTEiJ_G0001421.1 mouse_genomes_project 5 45969377 45970990 + TEC TEC MGP_CASTEiJ_T0074418.1 MGP_CASTEiJ_G0029163.1 mouse_genomes_project 5 125072210 125089379 + MGP_CASTEiJ_P0074418 Orai1 protein_coding protein_coding MGP_CASTEiJ_T0074419.1 MGP_CASTEiJ_G0029163.1 mouse_genomes_project 5 125072210 125089679 + MGP_CASTEiJ_P0074419 Orai1 protein_coding protein_coding MGP_CASTEiJ_T0074420.1 MGP_CASTEiJ_G0029163.1 mouse_genomes_project 5 125072484 125088705 + Orai1 protein_coding processed_transcript MGP_CASTEiJ_T0007909.1 MGP_CASTEiJ_G0006462.1 mouse_genomes_project 5 37182802 37323123 - 4930513D17Rik lincRNA lincRNA MGP_CASTEiJ_T0007910.1 MGP_CASTEiJ_G0006462.1 mouse_genomes_project 5 37183613 37323166 - 4930513D17Rik lincRNA lincRNA MGP_CASTEiJ_T0007911.1 MGP_CASTEiJ_G0006462.1 mouse_genomes_project 5 37197216 37323121 - 4930513D17Rik lincRNA lincRNA MGP_CASTEiJ_T0071396.1 MGP_CASTEiJ_G0028577.1 mouse_genomes_project 5 32124920 32151080 - MGP_CASTEiJ_P0071396 Nop14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0071397.1 MGP_CASTEiJ_G0028577.1 mouse_genomes_project 5 32124927 32150538 - MGP_CASTEiJ_P0071397 Nop14 protein_coding protein_coding MGP_CASTEiJ_T0071398.1 MGP_CASTEiJ_G0028577.1 mouse_genomes_project 5 32127712 32133144 - MGP_CASTEiJ_P0071398 Nop14 protein_coding protein_coding MGP_CASTEiJ_T0071399.1 MGP_CASTEiJ_G0028577.1 mouse_genomes_project 5 32129909 32137408 - Nop14 protein_coding retained_intron MGP_CASTEiJ_T0017412.1 MGP_CASTEiJ_G0014918.1 mouse_genomes_project 5 64435233 64438119 - N4bp2os processed_transcript antisense MGP_CASTEiJ_T0017413.1 MGP_CASTEiJ_G0014918.1 mouse_genomes_project 5 64435687 64437610 - N4bp2os processed_transcript antisense MGP_CASTEiJ_T0017414.1 MGP_CASTEiJ_G0014918.1 mouse_genomes_project 5 64436624 64438653 - N4bp2os processed_transcript retained_intron MGP_CASTEiJ_T0073346.1 MGP_CASTEiJ_G0028970.1 mouse_genomes_project 5 109198751 109230009 - MGP_CASTEiJ_P0073346 Cplx1 protein_coding protein_coding MGP_CASTEiJ_T0073347.1 MGP_CASTEiJ_G0028970.1 mouse_genomes_project 5 109200455 109229985 - MGP_CASTEiJ_P0073347 Cplx1 protein_coding protein_coding MGP_CASTEiJ_T0075855.1 MGP_CASTEiJ_G0029429.1 mouse_genomes_project 5 146994799 146999454 - MGP_CASTEiJ_P0075855 Zfp853 protein_coding protein_coding MGP_CASTEiJ_T0010375.1 MGP_CASTEiJ_G0008563.1 mouse_genomes_project 5 32230561 32230675 - Mir467g miRNA miRNA MGP_CASTEiJ_T0101615.1 MGP_CASTEiJ_G0038474.1 mouse_genomes_project 5 56174906 56175484 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101610.1 MGP_CASTEiJ_G0038470.1 mouse_genomes_project 5 30579126 30580290 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101611.1 MGP_CASTEiJ_G0038470.1 mouse_genomes_project 5 30579815 30580602 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0074736.1 MGP_CASTEiJ_G0029216.1 mouse_genomes_project 5 127677691 127725818 + MGP_CASTEiJ_P0074736 Aacs protein_coding protein_coding MGP_CASTEiJ_T0074737.1 MGP_CASTEiJ_G0029216.1 mouse_genomes_project 5 127711899 127721135 + Aacs protein_coding retained_intron MGP_CASTEiJ_T0074738.1 MGP_CASTEiJ_G0029216.1 mouse_genomes_project 5 127717886 127720295 + Aacs protein_coding retained_intron MGP_CASTEiJ_T0074739.1 MGP_CASTEiJ_G0029216.1 mouse_genomes_project 5 127721096 127721610 + Aacs protein_coding processed_transcript MGP_CASTEiJ_T0074740.1 MGP_CASTEiJ_G0029216.1 mouse_genomes_project 5 127722605 127723403 + Aacs protein_coding processed_transcript MGP_CASTEiJ_T0074741.1 MGP_CASTEiJ_G0029216.1 mouse_genomes_project 5 127723651 127724764 + Aacs protein_coding processed_transcript MGP_CASTEiJ_T0014460.1 MGP_CASTEiJ_G0012623.1 mouse_genomes_project 5 45805621 45805974 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008126.1 MGP_CASTEiJ_G0006620.1 mouse_genomes_project 5 119923455 119923962 - Gm28563 lincRNA lincRNA MGP_CASTEiJ_T0017472.1 MGP_CASTEiJ_G0014938.1 mouse_genomes_project 5 155960454 155977760 + processed_transcript retained_intron MGP_CASTEiJ_T0017473.1 MGP_CASTEiJ_G0014938.1 mouse_genomes_project 5 155960488 155991730 + processed_transcript lincRNA MGP_CASTEiJ_T0017474.1 MGP_CASTEiJ_G0014938.1 mouse_genomes_project 5 155960497 156010990 + processed_transcript lincRNA MGP_CASTEiJ_T0017475.1 MGP_CASTEiJ_G0014938.1 mouse_genomes_project 5 155995713 156010783 + processed_transcript lincRNA MGP_CASTEiJ_T0017476.1 MGP_CASTEiJ_G0014938.1 mouse_genomes_project 5 156002094 156032142 + processed_transcript lincRNA MGP_CASTEiJ_T0017477.1 MGP_CASTEiJ_G0014938.1 mouse_genomes_project 5 156002116 156030542 + processed_transcript lincRNA MGP_CASTEiJ_T0076057.1 MGP_CASTEiJ_G0029473.1 mouse_genomes_project 5 150263692 150340216 + MGP_CASTEiJ_P0076057 Cdk8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076058.1 MGP_CASTEiJ_G0029473.1 mouse_genomes_project 5 150263750 150329063 + MGP_CASTEiJ_P0076058 Cdk8 protein_coding protein_coding MGP_CASTEiJ_T0076059.1 MGP_CASTEiJ_G0029473.1 mouse_genomes_project 5 150263847 150305924 + MGP_CASTEiJ_P0076059 Cdk8 protein_coding protein_coding MGP_CASTEiJ_T0076060.1 MGP_CASTEiJ_G0029473.1 mouse_genomes_project 5 150264155 150340219 + MGP_CASTEiJ_P0076060 Cdk8 protein_coding protein_coding MGP_CASTEiJ_T0076061.1 MGP_CASTEiJ_G0029473.1 mouse_genomes_project 5 150291039 150293235 + Cdk8 protein_coding retained_intron MGP_CASTEiJ_T0076062.1 MGP_CASTEiJ_G0029473.1 mouse_genomes_project 5 150322488 150328493 + Cdk8 protein_coding processed_transcript MGP_CASTEiJ_T0076063.1 MGP_CASTEiJ_G0029473.1 mouse_genomes_project 5 150331247 150340161 + Cdk8 protein_coding retained_intron MGP_CASTEiJ_T0076064.1 MGP_CASTEiJ_G0029473.1 mouse_genomes_project 5 150332701 150335858 + Cdk8 protein_coding retained_intron MGP_CASTEiJ_T0072386.1 MGP_CASTEiJ_G0028744.1 mouse_genomes_project 5 74187742 74190035 + MGP_CASTEiJ_P0072386 Gsx2 protein_coding protein_coding MGP_CASTEiJ_T0072387.1 MGP_CASTEiJ_G0028744.1 mouse_genomes_project 5 74187743 74189767 + MGP_CASTEiJ_P0072387 Gsx2 protein_coding protein_coding MGP_CASTEiJ_T0070274.1 MGP_CASTEiJ_G0028392.1 mouse_genomes_project 5 4321838 4322211 + 4921511H03Rik protein_coding processed_transcript MGP_CASTEiJ_T0070275.1 MGP_CASTEiJ_G0028392.1 mouse_genomes_project 5 4321844 4329216 + MGP_CASTEiJ_P0070275 4921511H03Rik protein_coding protein_coding MGP_CASTEiJ_T0070276.1 MGP_CASTEiJ_G0028392.1 mouse_genomes_project 5 4321851 4325295 + MGP_CASTEiJ_P0070276 4921511H03Rik protein_coding protein_coding MGP_CASTEiJ_T0070277.1 MGP_CASTEiJ_G0028392.1 mouse_genomes_project 5 4321865 4323529 + MGP_CASTEiJ_P0070277 4921511H03Rik protein_coding protein_coding MGP_CASTEiJ_T0070426.1 MGP_CASTEiJ_G0028416.1 mouse_genomes_project 5 15209137 15300500 - MGP_CASTEiJ_P0070426 Gnai1 protein_coding protein_coding MGP_CASTEiJ_T0075678.1 MGP_CASTEiJ_G0029388.1 mouse_genomes_project 5 142830532 142846290 - MGP_CASTEiJ_P0075678 Zfand2a protein_coding protein_coding MGP_CASTEiJ_T0075679.1 MGP_CASTEiJ_G0029388.1 mouse_genomes_project 5 142830537 142846258 - MGP_CASTEiJ_P0075679 Zfand2a protein_coding protein_coding MGP_CASTEiJ_T0075680.1 MGP_CASTEiJ_G0029388.1 mouse_genomes_project 5 142834215 142840008 - Zfand2a protein_coding processed_transcript MGP_CASTEiJ_T0075681.1 MGP_CASTEiJ_G0029388.1 mouse_genomes_project 5 142839547 142846205 - MGP_CASTEiJ_P0075681 Zfand2a protein_coding protein_coding MGP_CASTEiJ_T0075682.1 MGP_CASTEiJ_G0029388.1 mouse_genomes_project 5 142840140 142846169 - Zfand2a protein_coding processed_transcript MGP_CASTEiJ_T0072631.1 MGP_CASTEiJ_G0028799.1 mouse_genomes_project 5 87616838 87623877 - MGP_CASTEiJ_P0072631 Csn2 protein_coding protein_coding MGP_CASTEiJ_T0072632.1 MGP_CASTEiJ_G0028799.1 mouse_genomes_project 5 87616839 87623656 - Csn2 protein_coding retained_intron MGP_CASTEiJ_T0072633.1 MGP_CASTEiJ_G0028799.1 mouse_genomes_project 5 87616842 87620847 - Csn2 protein_coding retained_intron MGP_CASTEiJ_T0072634.1 MGP_CASTEiJ_G0028799.1 mouse_genomes_project 5 87616842 87623672 - MGP_CASTEiJ_P0072634 Csn2 protein_coding protein_coding MGP_CASTEiJ_T0072635.1 MGP_CASTEiJ_G0028799.1 mouse_genomes_project 5 87617018 87623656 - MGP_CASTEiJ_P0072635 Csn2 protein_coding protein_coding MGP_CASTEiJ_T0072636.1 MGP_CASTEiJ_G0028799.1 mouse_genomes_project 5 87617082 87623668 - MGP_CASTEiJ_P0072636 Csn2 protein_coding protein_coding MGP_CASTEiJ_T0072637.1 MGP_CASTEiJ_G0028799.1 mouse_genomes_project 5 87617142 87623668 - MGP_CASTEiJ_P0072637 Csn2 protein_coding protein_coding MGP_CASTEiJ_T0072638.1 MGP_CASTEiJ_G0028799.1 mouse_genomes_project 5 87618057 87622319 - MGP_CASTEiJ_P0072638 Csn2 protein_coding protein_coding MGP_CASTEiJ_T0072639.1 MGP_CASTEiJ_G0028799.1 mouse_genomes_project 5 87618745 87620722 - Csn2 protein_coding processed_transcript MGP_CASTEiJ_T0072640.1 MGP_CASTEiJ_G0028799.1 mouse_genomes_project 5 87622035 87623668 - Csn2 protein_coding retained_intron MGP_CASTEiJ_T0072641.1 MGP_CASTEiJ_G0028799.1 mouse_genomes_project 5 87622119 87623668 - Csn2 protein_coding retained_intron MGP_CASTEiJ_T0071667.1 MGP_CASTEiJ_G0028622.1 mouse_genomes_project 5 36359600 36376534 - MGP_CASTEiJ_P0071667 Zfp518b protein_coding protein_coding MGP_CASTEiJ_T0071668.1 MGP_CASTEiJ_G0028622.1 mouse_genomes_project 5 36359602 36376458 - MGP_CASTEiJ_P0071668 Zfp518b protein_coding protein_coding MGP_CASTEiJ_T0071669.1 MGP_CASTEiJ_G0028622.1 mouse_genomes_project 5 36365288 36376534 - MGP_CASTEiJ_P0071669 Zfp518b protein_coding protein_coding MGP_CASTEiJ_T0071670.1 MGP_CASTEiJ_G0028622.1 mouse_genomes_project 5 36365739 36376465 - MGP_CASTEiJ_P0071670 Zfp518b protein_coding protein_coding MGP_CASTEiJ_T0017442.1 MGP_CASTEiJ_G0014930.1 mouse_genomes_project 5 126774697 126804944 + Tctn2 processed_transcript processed_transcript MGP_CASTEiJ_T0017443.1 MGP_CASTEiJ_G0014930.1 mouse_genomes_project 5 126774697 126778130 + Tctn2 processed_transcript retained_intron MGP_CASTEiJ_T0017444.1 MGP_CASTEiJ_G0014930.1 mouse_genomes_project 5 126774732 126781678 + Tctn2 processed_transcript retained_intron MGP_CASTEiJ_T0017445.1 MGP_CASTEiJ_G0014930.1 mouse_genomes_project 5 126774735 126779360 + Tctn2 processed_transcript retained_intron MGP_CASTEiJ_T0017446.1 MGP_CASTEiJ_G0014930.1 mouse_genomes_project 5 126774740 126795734 + Tctn2 processed_transcript retained_intron MGP_CASTEiJ_T0017447.1 MGP_CASTEiJ_G0014930.1 mouse_genomes_project 5 126774745 126804664 + Tctn2 processed_transcript processed_transcript MGP_CASTEiJ_T0008249.1 MGP_CASTEiJ_G0006706.1 mouse_genomes_project 5 153505272 153506644 + Gm42787 lincRNA lincRNA MGP_CASTEiJ_T0101124.1 MGP_CASTEiJ_G0038037.1 mouse_genomes_project 5 78175366 78175502 + Gm25756 snoRNA snoRNA MGP_CASTEiJ_T0075832.1 MGP_CASTEiJ_G0029423.1 mouse_genomes_project 5 146664083 146786646 - MGP_CASTEiJ_P0075832 Rnf216 protein_coding protein_coding MGP_CASTEiJ_T0075833.1 MGP_CASTEiJ_G0029423.1 mouse_genomes_project 5 146665009 146786632 - MGP_CASTEiJ_P0075833 Rnf216 protein_coding protein_coding MGP_CASTEiJ_T0075834.1 MGP_CASTEiJ_G0029423.1 mouse_genomes_project 5 146665806 146772579 - MGP_CASTEiJ_P0075834 Rnf216 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075835.1 MGP_CASTEiJ_G0029423.1 mouse_genomes_project 5 146665838 146772579 - MGP_CASTEiJ_P0075835 Rnf216 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0075836.1 MGP_CASTEiJ_G0029423.1 mouse_genomes_project 5 146685530 146686932 - Rnf216 protein_coding retained_intron MGP_CASTEiJ_T0075837.1 MGP_CASTEiJ_G0029423.1 mouse_genomes_project 5 146739347 146786632 - Rnf216 protein_coding retained_intron MGP_CASTEiJ_T0075838.1 MGP_CASTEiJ_G0029423.1 mouse_genomes_project 5 146755160 146761950 - Rnf216 protein_coding retained_intron MGP_CASTEiJ_T0075839.1 MGP_CASTEiJ_G0029423.1 mouse_genomes_project 5 146764401 146786632 - Rnf216 protein_coding processed_transcript MGP_CASTEiJ_T0075840.1 MGP_CASTEiJ_G0029423.1 mouse_genomes_project 5 146764590 146786634 - Rnf216 protein_coding processed_transcript MGP_CASTEiJ_T0068646.1 MGP_CASTEiJ_G0028063.1 mouse_genomes_project 4 133557104 133565525 - Tmem57 protein_coding processed_transcript MGP_CASTEiJ_T0068647.1 MGP_CASTEiJ_G0028063.1 mouse_genomes_project 4 133557104 133612689 - MGP_CASTEiJ_P0068647 Tmem57 protein_coding protein_coding MGP_CASTEiJ_T0068648.1 MGP_CASTEiJ_G0028063.1 mouse_genomes_project 4 133558602 133612504 - MGP_CASTEiJ_P0068648 Tmem57 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068649.1 MGP_CASTEiJ_G0028063.1 mouse_genomes_project 4 133558602 133612528 - MGP_CASTEiJ_P0068649 Tmem57 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068650.1 MGP_CASTEiJ_G0028063.1 mouse_genomes_project 4 133565505 133612493 - MGP_CASTEiJ_P0068650 Tmem57 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068651.1 MGP_CASTEiJ_G0028063.1 mouse_genomes_project 4 133584554 133612607 - MGP_CASTEiJ_P0068651 Tmem57 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068652.1 MGP_CASTEiJ_G0028063.1 mouse_genomes_project 4 133594599 133612661 - Tmem57 protein_coding retained_intron MGP_CASTEiJ_T0069363.1 MGP_CASTEiJ_G0028241.1 mouse_genomes_project 4 147737682 147761554 + MGP_CASTEiJ_P0069363 Exosc10 protein_coding protein_coding MGP_CASTEiJ_T0069364.1 MGP_CASTEiJ_G0028241.1 mouse_genomes_project 4 147737684 147761543 + Exosc10 protein_coding processed_transcript MGP_CASTEiJ_T0069365.1 MGP_CASTEiJ_G0028241.1 mouse_genomes_project 4 147737708 147761546 + MGP_CASTEiJ_P0069365 Exosc10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069366.1 MGP_CASTEiJ_G0028241.1 mouse_genomes_project 4 147737715 147761554 + MGP_CASTEiJ_P0069366 Exosc10 protein_coding protein_coding MGP_CASTEiJ_T0069367.1 MGP_CASTEiJ_G0028241.1 mouse_genomes_project 4 147742211 147743303 + MGP_CASTEiJ_P0069367 Exosc10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069368.1 MGP_CASTEiJ_G0028241.1 mouse_genomes_project 4 147745516 147755773 + Exosc10 protein_coding retained_intron MGP_CASTEiJ_T0069369.1 MGP_CASTEiJ_G0028241.1 mouse_genomes_project 4 147747579 147755661 + Exosc10 protein_coding retained_intron MGP_CASTEiJ_T0069370.1 MGP_CASTEiJ_G0028241.1 mouse_genomes_project 4 147755324 147761474 + Exosc10 protein_coding processed_transcript MGP_CASTEiJ_T0014239.1 MGP_CASTEiJ_G0012402.1 mouse_genomes_project 4 112958326 112961155 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014244.1 MGP_CASTEiJ_G0012407.1 mouse_genomes_project 4 114499049 114499362 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068452.1 MGP_CASTEiJ_G0028021.1 mouse_genomes_project 4 131908092 131959563 - MGP_CASTEiJ_P0068452 Wdtc1 protein_coding protein_coding MGP_CASTEiJ_T0068453.1 MGP_CASTEiJ_G0028021.1 mouse_genomes_project 4 131909667 131959634 - MGP_CASTEiJ_P0068453 Wdtc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068454.1 MGP_CASTEiJ_G0028021.1 mouse_genomes_project 4 131909668 131959635 - MGP_CASTEiJ_P0068454 Wdtc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068455.1 MGP_CASTEiJ_G0028021.1 mouse_genomes_project 4 131909668 131959805 - MGP_CASTEiJ_P0068455 Wdtc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068456.1 MGP_CASTEiJ_G0028021.1 mouse_genomes_project 4 131926112 131974615 - Wdtc1 protein_coding processed_transcript MGP_CASTEiJ_T0068457.1 MGP_CASTEiJ_G0028021.1 mouse_genomes_project 4 131932223 131941237 - Wdtc1 protein_coding processed_transcript MGP_CASTEiJ_T0068458.1 MGP_CASTEiJ_G0028021.1 mouse_genomes_project 4 131932845 131975189 - Wdtc1 protein_coding processed_transcript MGP_CASTEiJ_T0004429.1 MGP_CASTEiJ_G0003855.1 mouse_genomes_project 4 136931521 136933106 - Gm13012 antisense antisense MGP_CASTEiJ_T0004430.1 MGP_CASTEiJ_G0003855.1 mouse_genomes_project 4 136931521 136933117 - Gm13012 antisense antisense MGP_CASTEiJ_T0004431.1 MGP_CASTEiJ_G0003855.1 mouse_genomes_project 4 136931521 136932592 - Gm13012 antisense antisense MGP_CASTEiJ_T0069838.1 MGP_CASTEiJ_G0028317.1 mouse_genomes_project 4 154643941 154653888 - MGP_CASTEiJ_P0069838 Tnfrsf14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069839.1 MGP_CASTEiJ_G0028317.1 mouse_genomes_project 4 154643941 154653888 - MGP_CASTEiJ_P0069839 Tnfrsf14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069840.1 MGP_CASTEiJ_G0028317.1 mouse_genomes_project 4 154643941 154653888 - MGP_CASTEiJ_P0069840 Tnfrsf14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069841.1 MGP_CASTEiJ_G0028317.1 mouse_genomes_project 4 154644843 154653557 - MGP_CASTEiJ_P0069841 Tnfrsf14 protein_coding protein_coding MGP_CASTEiJ_T0069842.1 MGP_CASTEiJ_G0028317.1 mouse_genomes_project 4 154644843 154653432 - MGP_CASTEiJ_P0069842 Tnfrsf14 protein_coding protein_coding MGP_CASTEiJ_T0069843.1 MGP_CASTEiJ_G0028317.1 mouse_genomes_project 4 154644877 154653401 - MGP_CASTEiJ_P0069843 Tnfrsf14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069844.1 MGP_CASTEiJ_G0028317.1 mouse_genomes_project 4 154644894 154653907 - MGP_CASTEiJ_P0069844 Tnfrsf14 protein_coding protein_coding MGP_CASTEiJ_T0069845.1 MGP_CASTEiJ_G0028317.1 mouse_genomes_project 4 154647104 154653907 - Tnfrsf14 protein_coding processed_transcript MGP_CASTEiJ_T0069846.1 MGP_CASTEiJ_G0028317.1 mouse_genomes_project 4 154651980 154653918 - Tnfrsf14 protein_coding processed_transcript MGP_CASTEiJ_T0067359.1 MGP_CASTEiJ_G0027786.1 mouse_genomes_project 4 115592299 115598008 - MGP_CASTEiJ_P0067359 Ccdc24 protein_coding protein_coding MGP_CASTEiJ_T0067360.1 MGP_CASTEiJ_G0027786.1 mouse_genomes_project 4 115593424 115594743 - Ccdc24 protein_coding processed_transcript MGP_CASTEiJ_T0067361.1 MGP_CASTEiJ_G0027786.1 mouse_genomes_project 4 115594517 115597075 - Ccdc24 protein_coding retained_intron MGP_CASTEiJ_T0067362.1 MGP_CASTEiJ_G0027786.1 mouse_genomes_project 4 115595029 115598327 - MGP_CASTEiJ_P0067362 Ccdc24 protein_coding protein_coding MGP_CASTEiJ_T0067363.1 MGP_CASTEiJ_G0027786.1 mouse_genomes_project 4 115595278 115596881 - MGP_CASTEiJ_P0067363 Ccdc24 protein_coding protein_coding MGP_CASTEiJ_T0067364.1 MGP_CASTEiJ_G0027786.1 mouse_genomes_project 4 115595393 115598293 - MGP_CASTEiJ_P0067364 Ccdc24 protein_coding protein_coding MGP_CASTEiJ_T0067365.1 MGP_CASTEiJ_G0027786.1 mouse_genomes_project 4 115595534 115597109 - Ccdc24 protein_coding processed_transcript MGP_CASTEiJ_T0067366.1 MGP_CASTEiJ_G0027786.1 mouse_genomes_project 4 115595912 115598330 - MGP_CASTEiJ_P0067366 Ccdc24 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067367.1 MGP_CASTEiJ_G0027786.1 mouse_genomes_project 4 115596309 115598293 - MGP_CASTEiJ_P0067367 Ccdc24 protein_coding protein_coding MGP_CASTEiJ_T0065816.1 MGP_CASTEiJ_G0027460.1 mouse_genomes_project 4 56352594 56366710 - MGP_CASTEiJ_P0065816 Txn1 protein_coding protein_coding MGP_CASTEiJ_T0068268.1 MGP_CASTEiJ_G0027986.1 mouse_genomes_project 4 130209625 130293625 - MGP_CASTEiJ_P0068268 Ptpru protein_coding unknown_likely_coding MGP_CASTEiJ_T0068269.1 MGP_CASTEiJ_G0027986.1 mouse_genomes_project 4 130219801 130293712 - MGP_CASTEiJ_P0068269 Ptpru protein_coding protein_coding MGP_CASTEiJ_T0068270.1 MGP_CASTEiJ_G0027986.1 mouse_genomes_project 4 130219802 130220269 - Ptpru protein_coding processed_transcript MGP_CASTEiJ_T0068271.1 MGP_CASTEiJ_G0027986.1 mouse_genomes_project 4 130220745 130293622 - MGP_CASTEiJ_P0068271 Ptpru protein_coding unknown_likely_coding MGP_CASTEiJ_T0068272.1 MGP_CASTEiJ_G0027986.1 mouse_genomes_project 4 130220845 130293655 - MGP_CASTEiJ_P0068272 Ptpru protein_coding protein_coding MGP_CASTEiJ_T0068273.1 MGP_CASTEiJ_G0027986.1 mouse_genomes_project 4 130223479 130293676 - Ptpru protein_coding processed_transcript MGP_CASTEiJ_T0068274.1 MGP_CASTEiJ_G0027986.1 mouse_genomes_project 4 130234517 130276888 - MGP_CASTEiJ_P0068274 Ptpru protein_coding protein_coding MGP_CASTEiJ_T0068275.1 MGP_CASTEiJ_G0027986.1 mouse_genomes_project 4 130239798 130257113 - Ptpru protein_coding processed_transcript MGP_CASTEiJ_T0068276.1 MGP_CASTEiJ_G0027986.1 mouse_genomes_project 4 130246014 130250783 - Ptpru protein_coding retained_intron MGP_CASTEiJ_T0068277.1 MGP_CASTEiJ_G0027986.1 mouse_genomes_project 4 130253856 130257737 - Ptpru protein_coding retained_intron MGP_CASTEiJ_T0065400.1 MGP_CASTEiJ_G0027361.1 mouse_genomes_project 4 41408414 41413053 - MGP_CASTEiJ_P0065400 Olfr71 protein_coding protein_coding MGP_CASTEiJ_T0065401.1 MGP_CASTEiJ_G0027361.1 mouse_genomes_project 4 41408414 41409353 - MGP_CASTEiJ_P0065401 Olfr71 protein_coding protein_coding MGP_CASTEiJ_T0010319.1 MGP_CASTEiJ_G0008507.1 mouse_genomes_project 4 118725425 118725517 - Mir30e miRNA miRNA MGP_CASTEiJ_T0004404.1 MGP_CASTEiJ_G0003834.1 mouse_genomes_project 4 123039288 123071929 - Gm12930 antisense antisense MGP_CASTEiJ_T0069528.1 MGP_CASTEiJ_G0028268.1 mouse_genomes_project 4 149582218 149589767 + MGP_CASTEiJ_P0069528 Eno1b protein_coding protein_coding MGP_CASTEiJ_T0069529.1 MGP_CASTEiJ_G0028268.1 mouse_genomes_project 4 149582449 149597492 + MGP_CASTEiJ_P0069529 Eno1b protein_coding protein_coding MGP_CASTEiJ_T0069530.1 MGP_CASTEiJ_G0028268.1 mouse_genomes_project 4 149582603 149597493 + MGP_CASTEiJ_P0069530 Eno1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0069531.1 MGP_CASTEiJ_G0028268.1 mouse_genomes_project 4 149582737 149588207 + Eno1b protein_coding retained_intron MGP_CASTEiJ_T0069532.1 MGP_CASTEiJ_G0028268.1 mouse_genomes_project 4 149582737 149590826 + MGP_CASTEiJ_P0069532 Eno1b protein_coding protein_coding MGP_CASTEiJ_T0069533.1 MGP_CASTEiJ_G0028268.1 mouse_genomes_project 4 149582740 149585431 + Eno1b protein_coding retained_intron MGP_CASTEiJ_T0069534.1 MGP_CASTEiJ_G0028268.1 mouse_genomes_project 4 149583201 149587622 + MGP_CASTEiJ_P0069534 Eno1b protein_coding protein_coding MGP_CASTEiJ_T0069535.1 MGP_CASTEiJ_G0028268.1 mouse_genomes_project 4 149588963 149597486 + MGP_CASTEiJ_P0069535 Eno1b protein_coding protein_coding MGP_CASTEiJ_T0069536.1 MGP_CASTEiJ_G0028268.1 mouse_genomes_project 4 149589712 149595091 + Eno1b protein_coding retained_intron MGP_CASTEiJ_T0069537.1 MGP_CASTEiJ_G0028268.1 mouse_genomes_project 4 149594585 149595757 + Eno1b protein_coding retained_intron MGP_CASTEiJ_T0069538.1 MGP_CASTEiJ_G0028268.1 mouse_genomes_project 4 149595659 149596487 + Eno1b protein_coding retained_intron MGP_CASTEiJ_T0069539.1 MGP_CASTEiJ_G0028268.1 mouse_genomes_project 4 149595764 149596829 + Eno1b protein_coding retained_intron MGP_CASTEiJ_T0004471.1 MGP_CASTEiJ_G0003885.1 mouse_genomes_project 4 149210095 149214257 + Gm13070 antisense antisense MGP_CASTEiJ_T0101093.1 MGP_CASTEiJ_G0038006.1 mouse_genomes_project 4 130818018 130818092 + Snord99 snoRNA snoRNA MGP_CASTEiJ_T0101064.1 MGP_CASTEiJ_G0037977.1 mouse_genomes_project 4 91175523 91175651 - Gm23443 snoRNA snoRNA MGP_CASTEiJ_T0065085.1 MGP_CASTEiJ_G0027307.1 mouse_genomes_project 4 38630675 38645306 - MGP_CASTEiJ_P0065085 Aqp7 protein_coding protein_coding MGP_CASTEiJ_T0065086.1 MGP_CASTEiJ_G0027307.1 mouse_genomes_project 4 38630675 38647999 - MGP_CASTEiJ_P0065086 Aqp7 protein_coding protein_coding MGP_CASTEiJ_T0065087.1 MGP_CASTEiJ_G0027307.1 mouse_genomes_project 4 38634219 38639405 - Aqp7 protein_coding processed_transcript MGP_CASTEiJ_T0065088.1 MGP_CASTEiJ_G0027307.1 mouse_genomes_project 4 38634461 38635646 - Aqp7 protein_coding processed_transcript MGP_CASTEiJ_T0004460.1 MGP_CASTEiJ_G0003878.1 mouse_genomes_project 4 148178313 148185972 + Gm17029 antisense antisense MGP_CASTEiJ_T0004461.1 MGP_CASTEiJ_G0003878.1 mouse_genomes_project 4 148178342 148202605 + Gm17029 antisense antisense MGP_CASTEiJ_T0004462.1 MGP_CASTEiJ_G0003878.1 mouse_genomes_project 4 148178376 148185009 + Gm17029 antisense antisense MGP_CASTEiJ_T0007703.1 MGP_CASTEiJ_G0006316.1 mouse_genomes_project 4 92696920 92699261 - 4930551L18Rik lincRNA lincRNA MGP_CASTEiJ_T0069021.1 MGP_CASTEiJ_G0028147.1 mouse_genomes_project 4 138533189 138659322 + MGP_CASTEiJ_P0069021 Ubr4 protein_coding protein_coding MGP_CASTEiJ_T0069023.1 MGP_CASTEiJ_G0028147.1 mouse_genomes_project 4 138561016 138642209 + MGP_CASTEiJ_P0069023 Ubr4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069024.1 MGP_CASTEiJ_G0028147.1 mouse_genomes_project 4 138561062 138681485 + MGP_CASTEiJ_P0069024 Ubr4 protein_coding protein_coding MGP_CASTEiJ_T0069025.1 MGP_CASTEiJ_G0028147.1 mouse_genomes_project 4 138561062 138681427 + MGP_CASTEiJ_P0069025 Ubr4 protein_coding protein_coding MGP_CASTEiJ_T0069026.1 MGP_CASTEiJ_G0028147.1 mouse_genomes_project 4 138561072 138579640 + Ubr4 protein_coding processed_transcript MGP_CASTEiJ_T0069027.1 MGP_CASTEiJ_G0028147.1 mouse_genomes_project 4 138596484 138641552 + MGP_CASTEiJ_P0069027 Ubr4 protein_coding protein_coding MGP_CASTEiJ_T0069028.1 MGP_CASTEiJ_G0028147.1 mouse_genomes_project 4 138598246 138599061 + Ubr4 protein_coding retained_intron MGP_CASTEiJ_T0069029.1 MGP_CASTEiJ_G0028147.1 mouse_genomes_project 4 138624604 138627731 + MGP_CASTEiJ_P0069029 Ubr4 protein_coding protein_coding MGP_CASTEiJ_T0069030.1 MGP_CASTEiJ_G0028147.1 mouse_genomes_project 4 138652819 138653536 + Ubr4 protein_coding retained_intron MGP_CASTEiJ_T0069031.1 MGP_CASTEiJ_G0028147.1 mouse_genomes_project 4 138666643 138671617 + Ubr4 protein_coding retained_intron MGP_CASTEiJ_T0069032.1 MGP_CASTEiJ_G0028147.1 mouse_genomes_project 4 138669750 138673405 + Ubr4 protein_coding processed_transcript MGP_CASTEiJ_T0069033.1 MGP_CASTEiJ_G0028147.1 mouse_genomes_project 4 138669933 138671860 + Ubr4 protein_coding retained_intron MGP_CASTEiJ_T0069034.1 MGP_CASTEiJ_G0028147.1 mouse_genomes_project 4 138671186 138673487 + Ubr4 protein_coding retained_intron MGP_CASTEiJ_T0067164.1 MGP_CASTEiJ_G0027751.1 mouse_genomes_project 4 113776291 113781347 - MGP_CASTEiJ_P0067164 Tspan1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067165.1 MGP_CASTEiJ_G0027751.1 mouse_genomes_project 4 113777000 113781300 - MGP_CASTEiJ_P0067165 Tspan1 protein_coding protein_coding MGP_CASTEiJ_T0067166.1 MGP_CASTEiJ_G0027751.1 mouse_genomes_project 4 113777024 113778526 - Tspan1 protein_coding retained_intron MGP_CASTEiJ_T0069361.1 MGP_CASTEiJ_G0028240.1 mouse_genomes_project 4 147668707 147674064 - MGP_CASTEiJ_P0069361 Angptl7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067492.1 MGP_CASTEiJ_G0027821.1 mouse_genomes_project 4 117056397 117069438 - MGP_CASTEiJ_P0067492 4930538K18Rik protein_coding protein_coding MGP_CASTEiJ_T0001379.1 MGP_CASTEiJ_G0001308.1 mouse_genomes_project 4 151525378 151528238 - TEC TEC MGP_CASTEiJ_T0067120.1 MGP_CASTEiJ_G0027744.1 mouse_genomes_project 4 113554193 113615899 - Faah protein_coding retained_intron MGP_CASTEiJ_T0067121.1 MGP_CASTEiJ_G0027744.1 mouse_genomes_project 4 113588423 113615940 - Faah protein_coding retained_intron MGP_CASTEiJ_T0067122.1 MGP_CASTEiJ_G0027744.1 mouse_genomes_project 4 113588423 113616150 - MGP_CASTEiJ_P0067122 Faah protein_coding protein_coding MGP_CASTEiJ_T0067123.1 MGP_CASTEiJ_G0027744.1 mouse_genomes_project 4 113589948 113615951 - Faah protein_coding retained_intron MGP_CASTEiJ_T0067124.1 MGP_CASTEiJ_G0027744.1 mouse_genomes_project 4 113590061 113591824 - Faah protein_coding retained_intron MGP_CASTEiJ_T0067125.1 MGP_CASTEiJ_G0027744.1 mouse_genomes_project 4 113590469 113591693 - Faah protein_coding retained_intron MGP_CASTEiJ_T0067126.1 MGP_CASTEiJ_G0027744.1 mouse_genomes_project 4 113593470 113615899 - Faah protein_coding processed_transcript MGP_CASTEiJ_T0067127.1 MGP_CASTEiJ_G0027744.1 mouse_genomes_project 4 113597479 113615921 - Faah protein_coding processed_transcript MGP_CASTEiJ_T0004459.1 MGP_CASTEiJ_G0003877.1 mouse_genomes_project 4 148165508 148166931 - Gm13205 antisense antisense MGP_CASTEiJ_T0069934.1 MGP_CASTEiJ_G0028331.1 mouse_genomes_project 4 155333600 155369059 + MGP_CASTEiJ_P0069934 Nadk protein_coding protein_coding MGP_CASTEiJ_T0069935.1 MGP_CASTEiJ_G0028331.1 mouse_genomes_project 4 155334869 155369063 + MGP_CASTEiJ_P0069935 Nadk protein_coding protein_coding MGP_CASTEiJ_T0069936.1 MGP_CASTEiJ_G0028331.1 mouse_genomes_project 4 155334996 155350026 + Nadk protein_coding processed_transcript MGP_CASTEiJ_T0069937.1 MGP_CASTEiJ_G0028331.1 mouse_genomes_project 4 155335008 155363221 + MGP_CASTEiJ_P0069937 Nadk protein_coding unknown_likely_coding MGP_CASTEiJ_T0069938.1 MGP_CASTEiJ_G0028331.1 mouse_genomes_project 4 155335008 155363221 + MGP_CASTEiJ_P0069938 Nadk protein_coding unknown_likely_coding MGP_CASTEiJ_T0069939.1 MGP_CASTEiJ_G0028331.1 mouse_genomes_project 4 155335012 155350020 + MGP_CASTEiJ_P0069939 Nadk protein_coding protein_coding MGP_CASTEiJ_T0069940.1 MGP_CASTEiJ_G0028331.1 mouse_genomes_project 4 155335078 155352290 + MGP_CASTEiJ_P0069940 Nadk protein_coding protein_coding MGP_CASTEiJ_T0069941.1 MGP_CASTEiJ_G0028331.1 mouse_genomes_project 4 155335242 155352244 + MGP_CASTEiJ_P0069941 Nadk protein_coding protein_coding MGP_CASTEiJ_T0069942.1 MGP_CASTEiJ_G0028331.1 mouse_genomes_project 4 155349948 155361913 + MGP_CASTEiJ_P0069942 Nadk protein_coding unknown_likely_coding MGP_CASTEiJ_T0069943.1 MGP_CASTEiJ_G0028331.1 mouse_genomes_project 4 155356680 155369063 + MGP_CASTEiJ_P0069943 Nadk protein_coding protein_coding MGP_CASTEiJ_T0004491.1 MGP_CASTEiJ_G0003901.1 mouse_genomes_project 4 155813702 155815552 - Gm16008 antisense antisense MGP_CASTEiJ_T0004492.1 MGP_CASTEiJ_G0003901.1 mouse_genomes_project 4 155815454 155824485 - Gm16008 antisense antisense MGP_CASTEiJ_T0004493.1 MGP_CASTEiJ_G0003901.1 mouse_genomes_project 4 155819258 155824464 - Gm16008 antisense antisense MGP_CASTEiJ_T0065371.1 MGP_CASTEiJ_G0027355.1 mouse_genomes_project 4 41330767 41352008 + MGP_CASTEiJ_P0065371 Npr2 protein_coding protein_coding MGP_CASTEiJ_T0065372.1 MGP_CASTEiJ_G0027355.1 mouse_genomes_project 4 41331017 41352008 + MGP_CASTEiJ_P0065372 Npr2 protein_coding protein_coding MGP_CASTEiJ_T0065373.1 MGP_CASTEiJ_G0027355.1 mouse_genomes_project 4 41341852 41352008 + Npr2 protein_coding processed_transcript MGP_CASTEiJ_T0065374.1 MGP_CASTEiJ_G0027355.1 mouse_genomes_project 4 41341991 41343832 + Npr2 protein_coding processed_transcript MGP_CASTEiJ_T0065375.1 MGP_CASTEiJ_G0027355.1 mouse_genomes_project 4 41341998 41345116 + MGP_CASTEiJ_P0065375 Npr2 protein_coding protein_coding MGP_CASTEiJ_T0065376.1 MGP_CASTEiJ_G0027355.1 mouse_genomes_project 4 41342020 41352008 + MGP_CASTEiJ_P0065376 Npr2 protein_coding protein_coding MGP_CASTEiJ_T0065377.1 MGP_CASTEiJ_G0027355.1 mouse_genomes_project 4 41344872 41348938 + Npr2 protein_coding processed_transcript MGP_CASTEiJ_T0065378.1 MGP_CASTEiJ_G0027355.1 mouse_genomes_project 4 41347296 41351073 + Npr2 protein_coding processed_transcript MGP_CASTEiJ_T0065379.1 MGP_CASTEiJ_G0027355.1 mouse_genomes_project 4 41347933 41349165 + Npr2 protein_coding processed_transcript MGP_CASTEiJ_T0065380.1 MGP_CASTEiJ_G0027355.1 mouse_genomes_project 4 41348764 41350994 + Npr2 protein_coding processed_transcript MGP_CASTEiJ_T0065073.1 MGP_CASTEiJ_G0027303.1 mouse_genomes_project 4 38514229 38526777 + MGP_CASTEiJ_P0065073 Spink4 protein_coding protein_coding MGP_CASTEiJ_T0065074.1 MGP_CASTEiJ_G0027303.1 mouse_genomes_project 4 38514231 38519218 + Spink4 protein_coding processed_transcript MGP_CASTEiJ_T0004448.1 MGP_CASTEiJ_G0003870.1 mouse_genomes_project 4 141534552 141539265 + Tmem51os1 antisense antisense MGP_CASTEiJ_T0004449.1 MGP_CASTEiJ_G0003870.1 mouse_genomes_project 4 141534881 141539324 + Tmem51os1 antisense antisense MGP_CASTEiJ_T0004450.1 MGP_CASTEiJ_G0003870.1 mouse_genomes_project 4 141534923 141539258 + Tmem51os1 antisense antisense MGP_CASTEiJ_T0004451.1 MGP_CASTEiJ_G0003870.1 mouse_genomes_project 4 141535439 141539302 + Tmem51os1 antisense antisense MGP_CASTEiJ_T0067246.1 MGP_CASTEiJ_G0027766.1 mouse_genomes_project 4 114464400 114478366 + MGP_CASTEiJ_P0067246 Mutyh protein_coding protein_coding MGP_CASTEiJ_T0067247.1 MGP_CASTEiJ_G0027766.1 mouse_genomes_project 4 114464402 114473851 + MGP_CASTEiJ_P0067247 Mutyh protein_coding protein_coding MGP_CASTEiJ_T0067248.1 MGP_CASTEiJ_G0027766.1 mouse_genomes_project 4 114464415 114478373 + Mutyh protein_coding retained_intron MGP_CASTEiJ_T0067249.1 MGP_CASTEiJ_G0027766.1 mouse_genomes_project 4 114464425 114477709 + Mutyh protein_coding retained_intron MGP_CASTEiJ_T0067250.1 MGP_CASTEiJ_G0027766.1 mouse_genomes_project 4 114464432 114478373 + MGP_CASTEiJ_P0067250 Mutyh protein_coding unknown_likely_coding MGP_CASTEiJ_T0067251.1 MGP_CASTEiJ_G0027766.1 mouse_genomes_project 4 114464649 114478373 + MGP_CASTEiJ_P0067251 Mutyh protein_coding unknown_likely_coding MGP_CASTEiJ_T0067252.1 MGP_CASTEiJ_G0027766.1 mouse_genomes_project 4 114464649 114478373 + MGP_CASTEiJ_P0067252 Mutyh protein_coding unknown_likely_coding MGP_CASTEiJ_T0067253.1 MGP_CASTEiJ_G0027766.1 mouse_genomes_project 4 114464649 114478373 + MGP_CASTEiJ_P0067253 Mutyh protein_coding unknown_likely_coding MGP_CASTEiJ_T0067254.1 MGP_CASTEiJ_G0027766.1 mouse_genomes_project 4 114464649 114478373 + MGP_CASTEiJ_P0067254 Mutyh protein_coding unknown_likely_coding MGP_CASTEiJ_T0067255.1 MGP_CASTEiJ_G0027766.1 mouse_genomes_project 4 114471730 114478318 + MGP_CASTEiJ_P0067255 Mutyh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067256.1 MGP_CASTEiJ_G0027766.1 mouse_genomes_project 4 114471788 114475977 + Mutyh protein_coding retained_intron MGP_CASTEiJ_T0067257.1 MGP_CASTEiJ_G0027766.1 mouse_genomes_project 4 114476635 114478375 + Mutyh protein_coding retained_intron MGP_CASTEiJ_T0014255.1 MGP_CASTEiJ_G0012418.1 mouse_genomes_project 4 116264074 116264501 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014145.1 MGP_CASTEiJ_G0012308.1 mouse_genomes_project 4 74105098 74105445 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066968.1 MGP_CASTEiJ_G0027704.1 mouse_genomes_project 4 107563554 107590912 - MGP_CASTEiJ_P0066968 4930522H14Rik protein_coding protein_coding MGP_CASTEiJ_T0066969.1 MGP_CASTEiJ_G0027704.1 mouse_genomes_project 4 107563582 107590819 - MGP_CASTEiJ_P0066969 4930522H14Rik protein_coding protein_coding MGP_CASTEiJ_T0013932.1 MGP_CASTEiJ_G0012095.1 mouse_genomes_project 4 354235 354821 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068025.1 MGP_CASTEiJ_G0027943.1 mouse_genomes_project 4 127525504 127531347 + MGP_CASTEiJ_P0068025 Fndc5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068026.1 MGP_CASTEiJ_G0027943.1 mouse_genomes_project 4 127525585 127533236 + MGP_CASTEiJ_P0068026 Fndc5 protein_coding protein_coding MGP_CASTEiJ_T0014251.1 MGP_CASTEiJ_G0012414.1 mouse_genomes_project 4 115477980 115478303 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011247.1 MGP_CASTEiJ_G0009435.1 mouse_genomes_project 4 107205730 107206004 - Gm23743 misc_RNA misc_RNA MGP_CASTEiJ_T0014275.1 MGP_CASTEiJ_G0012438.1 mouse_genomes_project 4 121391339 121391657 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067221.1 MGP_CASTEiJ_G0027763.1 mouse_genomes_project 4 114353435 114354911 + MGP_CASTEiJ_P0067221 Ccdc163 protein_coding protein_coding MGP_CASTEiJ_T0067222.1 MGP_CASTEiJ_G0027763.1 mouse_genomes_project 4 114353437 114354627 + MGP_CASTEiJ_P0067222 Ccdc163 protein_coding protein_coding MGP_CASTEiJ_T0067223.1 MGP_CASTEiJ_G0027763.1 mouse_genomes_project 4 114353448 114355049 + MGP_CASTEiJ_P0067223 Ccdc163 protein_coding protein_coding MGP_CASTEiJ_T0067224.1 MGP_CASTEiJ_G0027763.1 mouse_genomes_project 4 114353454 114354582 + Ccdc163 protein_coding processed_transcript MGP_CASTEiJ_T0067225.1 MGP_CASTEiJ_G0027763.1 mouse_genomes_project 4 114353463 114355270 + Ccdc163 protein_coding retained_intron MGP_CASTEiJ_T0067226.1 MGP_CASTEiJ_G0027763.1 mouse_genomes_project 4 114353543 114354330 + MGP_CASTEiJ_P0067226 Ccdc163 protein_coding protein_coding MGP_CASTEiJ_T0067227.1 MGP_CASTEiJ_G0027763.1 mouse_genomes_project 4 114353768 114360089 + MGP_CASTEiJ_P0067227 Ccdc163 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067228.1 MGP_CASTEiJ_G0027763.1 mouse_genomes_project 4 114353856 114359943 + MGP_CASTEiJ_P0067228 Ccdc163 protein_coding protein_coding MGP_CASTEiJ_T0067229.1 MGP_CASTEiJ_G0027763.1 mouse_genomes_project 4 114357684 114388977 + Ccdc163 protein_coding processed_transcript MGP_CASTEiJ_T0067230.1 MGP_CASTEiJ_G0027763.1 mouse_genomes_project 4 114357983 114402736 + Ccdc163 protein_coding processed_transcript MGP_CASTEiJ_T0067231.1 MGP_CASTEiJ_G0027763.1 mouse_genomes_project 4 114358050 114360084 + MGP_CASTEiJ_P0067231 Ccdc163 protein_coding protein_coding MGP_CASTEiJ_T0099811.1 MGP_CASTEiJ_G0036724.1 mouse_genomes_project 4 106012126 106012230 - Gm23354 snRNA snRNA MGP_CASTEiJ_T0014081.1 MGP_CASTEiJ_G0012244.1 mouse_genomes_project 4 50583717 50583975 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065265.1 MGP_CASTEiJ_G0027340.1 mouse_genomes_project 4 40936452 41018760 + Atp8b5 protein_coding retained_intron MGP_CASTEiJ_T0065266.1 MGP_CASTEiJ_G0027340.1 mouse_genomes_project 4 40936463 41052162 + MGP_CASTEiJ_P0065266 Atp8b5 protein_coding protein_coding MGP_CASTEiJ_T0065267.1 MGP_CASTEiJ_G0027340.1 mouse_genomes_project 4 40936478 40994186 + MGP_CASTEiJ_P0065267 Atp8b5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065268.1 MGP_CASTEiJ_G0027340.1 mouse_genomes_project 4 40936478 41052164 + MGP_CASTEiJ_P0065268 Atp8b5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065269.1 MGP_CASTEiJ_G0027340.1 mouse_genomes_project 4 40936484 40998834 + MGP_CASTEiJ_P0065269 Atp8b5 protein_coding protein_coding MGP_CASTEiJ_T0065270.1 MGP_CASTEiJ_G0027340.1 mouse_genomes_project 4 41016160 41051222 + MGP_CASTEiJ_P0065270 Atp8b5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0017374.1 MGP_CASTEiJ_G0014904.1 mouse_genomes_project 4 155845923 155853035 - Gm13648 processed_transcript processed_transcript MGP_CASTEiJ_T0064791.1 MGP_CASTEiJ_G0027243.1 mouse_genomes_project 4 18480946 18489438 - Prdm13 protein_coding processed_transcript MGP_CASTEiJ_T0064792.1 MGP_CASTEiJ_G0027243.1 mouse_genomes_project 4 18480947 18489258 - MGP_CASTEiJ_P0064792 Prdm13 protein_coding protein_coding MGP_CASTEiJ_T0064793.1 MGP_CASTEiJ_G0027243.1 mouse_genomes_project 4 18480947 18489438 - MGP_CASTEiJ_P0064793 Prdm13 protein_coding protein_coding MGP_CASTEiJ_T0064794.1 MGP_CASTEiJ_G0027243.1 mouse_genomes_project 4 18483131 18489258 - Prdm13 protein_coding processed_transcript MGP_CASTEiJ_T0064795.1 MGP_CASTEiJ_G0027243.1 mouse_genomes_project 4 18483213 18489256 - Prdm13 protein_coding processed_transcript MGP_CASTEiJ_T0064796.1 MGP_CASTEiJ_G0027243.1 mouse_genomes_project 4 18485774 18489320 - Prdm13 protein_coding retained_intron MGP_CASTEiJ_T0099851.1 MGP_CASTEiJ_G0036764.1 mouse_genomes_project 4 149537411 149537518 - Gm22885 snRNA snRNA MGP_CASTEiJ_T0014122.1 MGP_CASTEiJ_G0012285.1 mouse_genomes_project 4 68791465 68793195 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065012.1 MGP_CASTEiJ_G0027289.1 mouse_genomes_project 4 32324381 32535387 - MGP_CASTEiJ_P0065012 Mob3b protein_coding protein_coding MGP_CASTEiJ_T0065013.1 MGP_CASTEiJ_G0027289.1 mouse_genomes_project 4 32457391 32535387 - Mob3b protein_coding processed_transcript MGP_CASTEiJ_T0069241.1 MGP_CASTEiJ_G0028198.1 mouse_genomes_project 4 142956143 142961842 + MGP_CASTEiJ_P0069241 Pramel1 protein_coding protein_coding MGP_CASTEiJ_T0067511.1 MGP_CASTEiJ_G0027824.1 mouse_genomes_project 4 117131994 117152213 - MGP_CASTEiJ_P0067511 Ybx1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067512.1 MGP_CASTEiJ_G0027824.1 mouse_genomes_project 4 117132654 117152454 - MGP_CASTEiJ_P0067512 Ybx1 protein_coding protein_coding MGP_CASTEiJ_T0067513.1 MGP_CASTEiJ_G0027824.1 mouse_genomes_project 4 117132663 117138199 - MGP_CASTEiJ_P0067513 Ybx1 protein_coding protein_coding MGP_CASTEiJ_T0067514.1 MGP_CASTEiJ_G0027824.1 mouse_genomes_project 4 117132934 117152324 - MGP_CASTEiJ_P0067514 Ybx1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067515.1 MGP_CASTEiJ_G0027824.1 mouse_genomes_project 4 117132934 117152324 - MGP_CASTEiJ_P0067515 Ybx1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067516.1 MGP_CASTEiJ_G0027824.1 mouse_genomes_project 4 117133070 117134365 - Ybx1 protein_coding processed_transcript MGP_CASTEiJ_T0067517.1 MGP_CASTEiJ_G0027824.1 mouse_genomes_project 4 117135838 117136882 - Ybx1 protein_coding processed_transcript MGP_CASTEiJ_T0067518.1 MGP_CASTEiJ_G0027824.1 mouse_genomes_project 4 117136968 117152340 - Ybx1 protein_coding processed_transcript MGP_CASTEiJ_T0067519.1 MGP_CASTEiJ_G0027824.1 mouse_genomes_project 4 117140400 117152330 - Ybx1 protein_coding processed_transcript MGP_CASTEiJ_T0067520.1 MGP_CASTEiJ_G0027824.1 mouse_genomes_project 4 117151472 117152350 - Ybx1 protein_coding processed_transcript MGP_CASTEiJ_T0017311.1 MGP_CASTEiJ_G0014866.1 mouse_genomes_project 4 69295854 69312489 + C630043F03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0007783.1 MGP_CASTEiJ_G0006373.1 mouse_genomes_project 4 130091152 130119283 - Gm12962 lincRNA lincRNA MGP_CASTEiJ_T0007784.1 MGP_CASTEiJ_G0006373.1 mouse_genomes_project 4 130091480 130125595 - Gm12962 lincRNA lincRNA MGP_CASTEiJ_T0068533.1 MGP_CASTEiJ_G0028039.1 mouse_genomes_project 4 132748225 132781108 + MGP_CASTEiJ_P0068533 Aim1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0068534.1 MGP_CASTEiJ_G0028039.1 mouse_genomes_project 4 132748225 132781108 + MGP_CASTEiJ_P0068534 Aim1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0068535.1 MGP_CASTEiJ_G0028039.1 mouse_genomes_project 4 132748254 132781022 + MGP_CASTEiJ_P0068535 Aim1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0068536.1 MGP_CASTEiJ_G0028039.1 mouse_genomes_project 4 132753343 132761560 + MGP_CASTEiJ_P0068536 Aim1l protein_coding protein_coding MGP_CASTEiJ_T0068537.1 MGP_CASTEiJ_G0028039.1 mouse_genomes_project 4 132755803 132781119 + MGP_CASTEiJ_P0068537 Aim1l protein_coding protein_coding MGP_CASTEiJ_T0068538.1 MGP_CASTEiJ_G0028039.1 mouse_genomes_project 4 132767662 132771511 + Aim1l protein_coding processed_transcript MGP_CASTEiJ_T0068539.1 MGP_CASTEiJ_G0028039.1 mouse_genomes_project 4 132767743 132776103 + MGP_CASTEiJ_P0068539 Aim1l protein_coding protein_coding MGP_CASTEiJ_T0068540.1 MGP_CASTEiJ_G0028039.1 mouse_genomes_project 4 132771136 132779707 + Aim1l protein_coding retained_intron MGP_CASTEiJ_T0068541.1 MGP_CASTEiJ_G0028039.1 mouse_genomes_project 4 132771136 132781116 + Aim1l protein_coding retained_intron MGP_CASTEiJ_T0068542.1 MGP_CASTEiJ_G0028039.1 mouse_genomes_project 4 132771139 132778094 + Aim1l protein_coding retained_intron MGP_CASTEiJ_T0068543.1 MGP_CASTEiJ_G0028039.1 mouse_genomes_project 4 132771174 132777658 + Aim1l protein_coding retained_intron MGP_CASTEiJ_T0068544.1 MGP_CASTEiJ_G0028039.1 mouse_genomes_project 4 132771260 132771713 + Aim1l protein_coding retained_intron MGP_CASTEiJ_T0068546.1 MGP_CASTEiJ_G0028039.1 mouse_genomes_project 4 132779425 132781001 + Aim1l protein_coding retained_intron MGP_CASTEiJ_T0068547.1 MGP_CASTEiJ_G0028039.1 mouse_genomes_project 4 132779760 132781111 + Aim1l protein_coding processed_transcript MGP_CASTEiJ_T0007834.1 MGP_CASTEiJ_G0006413.1 mouse_genomes_project 4 152834653 152835091 + Gm13174 lincRNA lincRNA MGP_CASTEiJ_T0004322.1 MGP_CASTEiJ_G0003773.1 mouse_genomes_project 4 42777838 42787013 - Gm12679 antisense antisense MGP_CASTEiJ_T0101074.1 MGP_CASTEiJ_G0037987.1 mouse_genomes_project 4 114828719 114828823 - Gm26330 snoRNA snoRNA MGP_CASTEiJ_T0064731.1 MGP_CASTEiJ_G0027220.1 mouse_genomes_project 4 11182924 11310747 - MGP_CASTEiJ_P0064731 Slc26a7 protein_coding protein_coding MGP_CASTEiJ_T0064732.1 MGP_CASTEiJ_G0027220.1 mouse_genomes_project 4 11185800 11199647 - Slc26a7 protein_coding processed_transcript MGP_CASTEiJ_T0064733.1 MGP_CASTEiJ_G0027220.1 mouse_genomes_project 4 11255070 11310471 - MGP_CASTEiJ_P0064733 Slc26a7 protein_coding protein_coding MGP_CASTEiJ_T0064734.1 MGP_CASTEiJ_G0027220.1 mouse_genomes_project 4 11280304 11310611 - MGP_CASTEiJ_P0064734 Slc26a7 protein_coding protein_coding MGP_CASTEiJ_T0099787.1 MGP_CASTEiJ_G0036700.1 mouse_genomes_project 4 41817762 41817874 - Gm22706 snRNA snRNA MGP_CASTEiJ_T0065755.1 MGP_CASTEiJ_G0027447.1 mouse_genomes_project 4 55066330 55067638 + MGP_CASTEiJ_P0065755 Gm26657 protein_coding protein_coding MGP_CASTEiJ_T0101056.1 MGP_CASTEiJ_G0037969.1 mouse_genomes_project 4 71779439 71779577 + Gm26379 snoRNA snoRNA MGP_CASTEiJ_T0067139.1 MGP_CASTEiJ_G0027747.1 mouse_genomes_project 4 113685011 113708184 + MGP_CASTEiJ_P0067139 Lrrc41 protein_coding protein_coding MGP_CASTEiJ_T0067140.1 MGP_CASTEiJ_G0027747.1 mouse_genomes_project 4 113685205 113694087 + Lrrc41 protein_coding processed_transcript MGP_CASTEiJ_T0067141.1 MGP_CASTEiJ_G0027747.1 mouse_genomes_project 4 113685287 113699660 + Lrrc41 protein_coding processed_transcript MGP_CASTEiJ_T0067142.1 MGP_CASTEiJ_G0027747.1 mouse_genomes_project 4 113686616 113699729 + Lrrc41 protein_coding processed_transcript MGP_CASTEiJ_T0067143.1 MGP_CASTEiJ_G0027747.1 mouse_genomes_project 4 113689163 113694085 + Lrrc41 protein_coding processed_transcript MGP_CASTEiJ_T0067144.1 MGP_CASTEiJ_G0027747.1 mouse_genomes_project 4 113700612 113704456 + Lrrc41 protein_coding processed_transcript MGP_CASTEiJ_T0069152.1 MGP_CASTEiJ_G0028178.1 mouse_genomes_project 4 140848719 140872359 + MGP_CASTEiJ_P0069152 Zbtb17 protein_coding protein_coding MGP_CASTEiJ_T0069153.1 MGP_CASTEiJ_G0028178.1 mouse_genomes_project 4 140848749 140873063 + Zbtb17 protein_coding processed_transcript MGP_CASTEiJ_T0069154.1 MGP_CASTEiJ_G0028178.1 mouse_genomes_project 4 140848764 140872359 + Zbtb17 protein_coding processed_transcript MGP_CASTEiJ_T0069155.1 MGP_CASTEiJ_G0028178.1 mouse_genomes_project 4 140848771 140864458 + Zbtb17 protein_coding processed_transcript MGP_CASTEiJ_T0069156.1 MGP_CASTEiJ_G0028178.1 mouse_genomes_project 4 140868520 140870181 + Zbtb17 protein_coding processed_transcript MGP_CASTEiJ_T0069157.1 MGP_CASTEiJ_G0028178.1 mouse_genomes_project 4 140869951 140871202 + Zbtb17 protein_coding processed_transcript MGP_CASTEiJ_T0069158.1 MGP_CASTEiJ_G0028178.1 mouse_genomes_project 4 140870548 140872203 + Zbtb17 protein_coding processed_transcript MGP_CASTEiJ_T0065341.1 MGP_CASTEiJ_G0027350.1 mouse_genomes_project 4 41219446 41251575 - MGP_CASTEiJ_P0065341 Tln1 protein_coding protein_coding MGP_CASTEiJ_T0065342.1 MGP_CASTEiJ_G0027350.1 mouse_genomes_project 4 41234621 41236859 - MGP_CASTEiJ_P0065342 Tln1 protein_coding protein_coding MGP_CASTEiJ_T0065343.1 MGP_CASTEiJ_G0027350.1 mouse_genomes_project 4 41236033 41240472 - MGP_CASTEiJ_P0065343 Tln1 protein_coding protein_coding MGP_CASTEiJ_T0065344.1 MGP_CASTEiJ_G0027350.1 mouse_genomes_project 4 41236813 41251320 - MGP_CASTEiJ_P0065344 Tln1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065345.1 MGP_CASTEiJ_G0027350.1 mouse_genomes_project 4 41242611 41243614 - Tln1 protein_coding processed_transcript MGP_CASTEiJ_T0065346.1 MGP_CASTEiJ_G0027350.1 mouse_genomes_project 4 41243676 41251310 - Tln1 protein_coding processed_transcript MGP_CASTEiJ_T0065347.1 MGP_CASTEiJ_G0027350.1 mouse_genomes_project 4 41244270 41247610 - MGP_CASTEiJ_P0065347 Tln1 protein_coding protein_coding MGP_CASTEiJ_T0065348.1 MGP_CASTEiJ_G0027350.1 mouse_genomes_project 4 41244728 41245111 - Tln1 protein_coding processed_transcript MGP_CASTEiJ_T0065349.1 MGP_CASTEiJ_G0027350.1 mouse_genomes_project 4 41248494 41251843 - Tln1 protein_coding processed_transcript MGP_CASTEiJ_T0007663.1 MGP_CASTEiJ_G0006280.1 mouse_genomes_project 4 53835020 53876908 + Gm12511 lincRNA lincRNA MGP_CASTEiJ_T0014233.1 MGP_CASTEiJ_G0012396.1 mouse_genomes_project 4 108596075 108597038 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013963.1 MGP_CASTEiJ_G0012126.1 mouse_genomes_project 4 12192708 12193820 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068574.1 MGP_CASTEiJ_G0028045.1 mouse_genomes_project 4 132917147 132935670 - MGP_CASTEiJ_P0068574 Catsper4 protein_coding protein_coding MGP_CASTEiJ_T0068575.1 MGP_CASTEiJ_G0028045.1 mouse_genomes_project 4 132917147 132935670 - MGP_CASTEiJ_P0068575 Catsper4 protein_coding protein_coding MGP_CASTEiJ_T0068576.1 MGP_CASTEiJ_G0028045.1 mouse_genomes_project 4 132933916 132935659 - MGP_CASTEiJ_P0068576 Catsper4 protein_coding protein_coding MGP_CASTEiJ_T0068577.1 MGP_CASTEiJ_G0028045.1 mouse_genomes_project 4 132934784 132935637 - Catsper4 protein_coding processed_transcript MGP_CASTEiJ_T0004317.1 MGP_CASTEiJ_G0003768.1 mouse_genomes_project 4 41278466 41305304 + Gm12472 antisense antisense MGP_CASTEiJ_T0064779.1 MGP_CASTEiJ_G0027237.1 mouse_genomes_project 4 16442023 16540636 - MGP_CASTEiJ_P0064779 Wwp1 protein_coding protein_coding MGP_CASTEiJ_T0064780.1 MGP_CASTEiJ_G0027237.1 mouse_genomes_project 4 16443401 16509492 - MGP_CASTEiJ_P0064780 Wwp1 protein_coding protein_coding MGP_CASTEiJ_T0064781.1 MGP_CASTEiJ_G0027237.1 mouse_genomes_project 4 16445315 16540680 - MGP_CASTEiJ_P0064781 Wwp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067018.1 MGP_CASTEiJ_G0027713.1 mouse_genomes_project 4 109949405 109958408 - protein_coding processed_transcript MGP_CASTEiJ_T0067019.1 MGP_CASTEiJ_G0027713.1 mouse_genomes_project 4 109950833 109973153 - MGP_CASTEiJ_P0067019 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067020.1 MGP_CASTEiJ_G0027713.1 mouse_genomes_project 4 109951465 109954604 - protein_coding processed_transcript MGP_CASTEiJ_T0067021.1 MGP_CASTEiJ_G0027713.1 mouse_genomes_project 4 109964360 109970438 - MGP_CASTEiJ_P0067021 protein_coding protein_coding MGP_CASTEiJ_T0067022.1 MGP_CASTEiJ_G0027713.1 mouse_genomes_project 4 109964689 109966189 - protein_coding processed_transcript MGP_CASTEiJ_T0067023.1 MGP_CASTEiJ_G0027713.1 mouse_genomes_project 4 109964728 109965454 - protein_coding processed_transcript MGP_CASTEiJ_T0014249.1 MGP_CASTEiJ_G0012412.1 mouse_genomes_project 4 114822682 114822886 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066290.1 MGP_CASTEiJ_G0027567.1 mouse_genomes_project 4 86183469 86184507 + MGP_CASTEiJ_P0066290 Gm26566 protein_coding protein_coding MGP_CASTEiJ_T0068403.1 MGP_CASTEiJ_G0028011.1 mouse_genomes_project 4 131405242 131444490 - MGP_CASTEiJ_P0068403 Stx12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068404.1 MGP_CASTEiJ_G0028011.1 mouse_genomes_project 4 131406468 131444655 - MGP_CASTEiJ_P0068404 Stx12 protein_coding protein_coding MGP_CASTEiJ_T0068405.1 MGP_CASTEiJ_G0028011.1 mouse_genomes_project 4 131410013 131421485 - Stx12 protein_coding processed_transcript MGP_CASTEiJ_T0067374.1 MGP_CASTEiJ_G0027788.1 mouse_genomes_project 4 115610106 115613049 - MGP_CASTEiJ_P0067374 Atp6v0b protein_coding protein_coding MGP_CASTEiJ_T0067375.1 MGP_CASTEiJ_G0027788.1 mouse_genomes_project 4 115610112 115611655 - Atp6v0b protein_coding retained_intron MGP_CASTEiJ_T0067376.1 MGP_CASTEiJ_G0027788.1 mouse_genomes_project 4 115610227 115611561 - Atp6v0b protein_coding retained_intron MGP_CASTEiJ_T0067377.1 MGP_CASTEiJ_G0027788.1 mouse_genomes_project 4 115610924 115612397 - Atp6v0b protein_coding retained_intron MGP_CASTEiJ_T0067378.1 MGP_CASTEiJ_G0027788.1 mouse_genomes_project 4 115610991 115612319 - MGP_CASTEiJ_P0067378 Atp6v0b protein_coding protein_coding MGP_CASTEiJ_T0067379.1 MGP_CASTEiJ_G0027788.1 mouse_genomes_project 4 115611395 115613049 - MGP_CASTEiJ_P0067379 Atp6v0b protein_coding protein_coding MGP_CASTEiJ_T0067380.1 MGP_CASTEiJ_G0027788.1 mouse_genomes_project 4 115612041 115613095 - MGP_CASTEiJ_P0067380 Atp6v0b protein_coding protein_coding MGP_CASTEiJ_T0067669.1 MGP_CASTEiJ_G0027862.1 mouse_genomes_project 4 121017837 121019399 + MGP_CASTEiJ_P0067669 protein_coding protein_coding MGP_CASTEiJ_T0069412.1 MGP_CASTEiJ_G0028246.1 mouse_genomes_project 4 148009020 148172913 + MGP_CASTEiJ_P0069412 Casz1 protein_coding protein_coding MGP_CASTEiJ_T0069413.1 MGP_CASTEiJ_G0028246.1 mouse_genomes_project 4 148009020 148163147 + MGP_CASTEiJ_P0069413 Casz1 protein_coding protein_coding MGP_CASTEiJ_T0069414.1 MGP_CASTEiJ_G0028246.1 mouse_genomes_project 4 148009056 148050332 + Casz1 protein_coding processed_transcript MGP_CASTEiJ_T0069415.1 MGP_CASTEiJ_G0028246.1 mouse_genomes_project 4 148104530 148107077 + Casz1 protein_coding processed_transcript MGP_CASTEiJ_T0069416.1 MGP_CASTEiJ_G0028246.1 mouse_genomes_project 4 148116254 148150925 + MGP_CASTEiJ_P0069416 Casz1 protein_coding protein_coding MGP_CASTEiJ_T0069417.1 MGP_CASTEiJ_G0028246.1 mouse_genomes_project 4 148145245 148170648 + MGP_CASTEiJ_P0069417 Casz1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069418.1 MGP_CASTEiJ_G0028246.1 mouse_genomes_project 4 148151142 148158567 + MGP_CASTEiJ_P0069418 Casz1 protein_coding protein_coding MGP_CASTEiJ_T0101012.1 MGP_CASTEiJ_G0037925.1 mouse_genomes_project 4 92310 92437 + Gm22541 snoRNA snoRNA MGP_CASTEiJ_T0066629.1 MGP_CASTEiJ_G0027643.1 mouse_genomes_project 4 102624441 102679644 - MGP_CASTEiJ_P0066629 C8a protein_coding unknown_likely_coding MGP_CASTEiJ_T0066630.1 MGP_CASTEiJ_G0027643.1 mouse_genomes_project 4 102624441 102680234 - MGP_CASTEiJ_P0066630 C8a protein_coding unknown_likely_coding MGP_CASTEiJ_T0066631.1 MGP_CASTEiJ_G0027643.1 mouse_genomes_project 4 102626250 102679488 - MGP_CASTEiJ_P0066631 C8a protein_coding protein_coding MGP_CASTEiJ_T0066050.1 MGP_CASTEiJ_G0027522.1 mouse_genomes_project 4 69207215 69295426 - MGP_CASTEiJ_P0066050 Tle1 protein_coding protein_coding MGP_CASTEiJ_T0066051.1 MGP_CASTEiJ_G0027522.1 mouse_genomes_project 4 69207878 69295364 - MGP_CASTEiJ_P0066051 Tle1 protein_coding protein_coding MGP_CASTEiJ_T0066052.1 MGP_CASTEiJ_G0027522.1 mouse_genomes_project 4 69207880 69295361 - MGP_CASTEiJ_P0066052 Tle1 protein_coding protein_coding MGP_CASTEiJ_T0066053.1 MGP_CASTEiJ_G0027522.1 mouse_genomes_project 4 69207883 69293597 - Tle1 protein_coding retained_intron MGP_CASTEiJ_T0066054.1 MGP_CASTEiJ_G0027522.1 mouse_genomes_project 4 69208280 69294657 - MGP_CASTEiJ_P0066054 Tle1 protein_coding protein_coding MGP_CASTEiJ_T0066055.1 MGP_CASTEiJ_G0027522.1 mouse_genomes_project 4 69208295 69210820 - Tle1 protein_coding processed_transcript MGP_CASTEiJ_T0066056.1 MGP_CASTEiJ_G0027522.1 mouse_genomes_project 4 69208323 69294690 - MGP_CASTEiJ_P0066056 Tle1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066057.1 MGP_CASTEiJ_G0027522.1 mouse_genomes_project 4 69230451 69233187 - MGP_CASTEiJ_P0066057 Tle1 protein_coding protein_coding MGP_CASTEiJ_T0066058.1 MGP_CASTEiJ_G0027522.1 mouse_genomes_project 4 69249882 69295369 - MGP_CASTEiJ_P0066058 Tle1 protein_coding protein_coding MGP_CASTEiJ_T0066059.1 MGP_CASTEiJ_G0027522.1 mouse_genomes_project 4 69250574 69293997 - MGP_CASTEiJ_P0066059 Tle1 protein_coding protein_coding MGP_CASTEiJ_T0066060.1 MGP_CASTEiJ_G0027522.1 mouse_genomes_project 4 69259490 69295400 - Tle1 protein_coding processed_transcript MGP_CASTEiJ_T0069782.1 MGP_CASTEiJ_G0028306.1 mouse_genomes_project 4 153725511 153777051 - MGP_CASTEiJ_P0069782 Trp73 protein_coding protein_coding MGP_CASTEiJ_T0069783.1 MGP_CASTEiJ_G0028306.1 mouse_genomes_project 4 153725518 153768742 - MGP_CASTEiJ_P0069783 Trp73 protein_coding protein_coding MGP_CASTEiJ_T0069784.1 MGP_CASTEiJ_G0028306.1 mouse_genomes_project 4 153727776 153768742 - MGP_CASTEiJ_P0069784 Trp73 protein_coding protein_coding MGP_CASTEiJ_T0069785.1 MGP_CASTEiJ_G0028306.1 mouse_genomes_project 4 153728253 153768736 - MGP_CASTEiJ_P0069785 Trp73 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069786.1 MGP_CASTEiJ_G0028306.1 mouse_genomes_project 4 153733805 153755645 - MGP_CASTEiJ_P0069786 Trp73 protein_coding protein_coding MGP_CASTEiJ_T0069787.1 MGP_CASTEiJ_G0028306.1 mouse_genomes_project 4 153737478 153788277 - MGP_CASTEiJ_P0069787 Trp73 protein_coding protein_coding MGP_CASTEiJ_T0014313.1 MGP_CASTEiJ_G0012476.1 mouse_genomes_project 4 135211653 135212176 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067076.1 MGP_CASTEiJ_G0027733.1 mouse_genomes_project 4 113081905 113102188 + MGP_CASTEiJ_P0067076 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0007613.1 MGP_CASTEiJ_G0006236.1 mouse_genomes_project 4 7922956 7946405 + Gm26663 lincRNA lincRNA MGP_CASTEiJ_T0068851.1 MGP_CASTEiJ_G0028111.1 mouse_genomes_project 4 136452858 136455027 + MGP_CASTEiJ_P0068851 1700013G24Rik protein_coding protein_coding MGP_CASTEiJ_T0066651.1 MGP_CASTEiJ_G0027653.1 mouse_genomes_project 4 104455672 104487029 - MGP_CASTEiJ_P0066651 Lexm protein_coding protein_coding MGP_CASTEiJ_T0066652.1 MGP_CASTEiJ_G0027653.1 mouse_genomes_project 4 104455672 104487032 - MGP_CASTEiJ_P0066652 Lexm protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066653.1 MGP_CASTEiJ_G0027653.1 mouse_genomes_project 4 104455672 104474380 - MGP_CASTEiJ_P0066653 Lexm protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066654.1 MGP_CASTEiJ_G0027653.1 mouse_genomes_project 4 104456074 104487029 - MGP_CASTEiJ_P0066654 Lexm protein_coding protein_coding MGP_CASTEiJ_T0007618.1 MGP_CASTEiJ_G0006241.1 mouse_genomes_project 4 10595184 10684467 - Gm11823 lincRNA lincRNA MGP_CASTEiJ_T0013990.1 MGP_CASTEiJ_G0012153.1 mouse_genomes_project 4 20336212 20337407 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004360.1 MGP_CASTEiJ_G0003799.1 mouse_genomes_project 4 97379249 97436187 - Gm12682 antisense antisense MGP_CASTEiJ_T0014039.1 MGP_CASTEiJ_G0012202.1 mouse_genomes_project 4 33865362 33866168 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102312.1 MGP_CASTEiJ_G0039037.1 mouse_genomes_project 4 93775591 93775796 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099822.1 MGP_CASTEiJ_G0036735.1 mouse_genomes_project 4 114872851 114872967 + Gm23143 snRNA snRNA MGP_CASTEiJ_T0013946.1 MGP_CASTEiJ_G0012109.1 mouse_genomes_project 4 5191311 5192260 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064979.1 MGP_CASTEiJ_G0027281.1 mouse_genomes_project 4 31951166 31998029 + MGP_CASTEiJ_P0064979 Rars2 protein_coding protein_coding MGP_CASTEiJ_T0064980.1 MGP_CASTEiJ_G0027281.1 mouse_genomes_project 4 31951170 31955129 + Rars2 protein_coding processed_transcript MGP_CASTEiJ_T0064981.1 MGP_CASTEiJ_G0027281.1 mouse_genomes_project 4 31951178 31961654 + Rars2 protein_coding processed_transcript MGP_CASTEiJ_T0064982.1 MGP_CASTEiJ_G0027281.1 mouse_genomes_project 4 31951183 31998025 + Rars2 protein_coding processed_transcript MGP_CASTEiJ_T0064983.1 MGP_CASTEiJ_G0027281.1 mouse_genomes_project 4 31951185 31966782 + MGP_CASTEiJ_P0064983 Rars2 protein_coding protein_coding MGP_CASTEiJ_T0064984.1 MGP_CASTEiJ_G0027281.1 mouse_genomes_project 4 31951187 31959646 + Rars2 protein_coding processed_transcript MGP_CASTEiJ_T0064985.1 MGP_CASTEiJ_G0027281.1 mouse_genomes_project 4 31983743 31993349 + Rars2 protein_coding processed_transcript MGP_CASTEiJ_T0065164.1 MGP_CASTEiJ_G0027326.1 mouse_genomes_project 4 39438297 39441765 + MGP_CASTEiJ_P0065164 Galt protein_coding protein_coding MGP_CASTEiJ_T0065165.1 MGP_CASTEiJ_G0027326.1 mouse_genomes_project 4 39438297 39441765 + MGP_CASTEiJ_P0065165 Galt protein_coding protein_coding MGP_CASTEiJ_T0065166.1 MGP_CASTEiJ_G0027326.1 mouse_genomes_project 4 39438322 39440619 + Galt protein_coding processed_transcript MGP_CASTEiJ_T0065167.1 MGP_CASTEiJ_G0027326.1 mouse_genomes_project 4 39438322 39439517 + Galt protein_coding processed_transcript MGP_CASTEiJ_T0065168.1 MGP_CASTEiJ_G0027326.1 mouse_genomes_project 4 39438827 39440550 + Galt protein_coding processed_transcript MGP_CASTEiJ_T0065169.1 MGP_CASTEiJ_G0027326.1 mouse_genomes_project 4 39438909 39440342 + Galt protein_coding processed_transcript MGP_CASTEiJ_T0065170.1 MGP_CASTEiJ_G0027326.1 mouse_genomes_project 4 39439030 39440550 + Galt protein_coding processed_transcript MGP_CASTEiJ_T0065171.1 MGP_CASTEiJ_G0027326.1 mouse_genomes_project 4 39439279 39441765 + Galt protein_coding processed_transcript MGP_CASTEiJ_T0065172.1 MGP_CASTEiJ_G0027326.1 mouse_genomes_project 4 39439323 39441308 + Galt protein_coding processed_transcript MGP_CASTEiJ_T0065173.1 MGP_CASTEiJ_G0027326.1 mouse_genomes_project 4 39439331 39440848 + Galt protein_coding processed_transcript MGP_CASTEiJ_T0007643.1 MGP_CASTEiJ_G0006265.1 mouse_genomes_project 4 41434762 41439306 + lincRNA lincRNA MGP_CASTEiJ_T0066497.1 MGP_CASTEiJ_G0027620.1 mouse_genomes_project 4 97792163 98155057 + MGP_CASTEiJ_P0066497 Ror1 protein_coding protein_coding MGP_CASTEiJ_T0066498.1 MGP_CASTEiJ_G0027620.1 mouse_genomes_project 4 98115037 98155228 + MGP_CASTEiJ_P0066498 Ror1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068608.1 MGP_CASTEiJ_G0028054.1 mouse_genomes_project 4 133071650 133091874 - MGP_CASTEiJ_P0068608 Extl1 protein_coding protein_coding MGP_CASTEiJ_T0068609.1 MGP_CASTEiJ_G0028054.1 mouse_genomes_project 4 133072858 133091835 - MGP_CASTEiJ_P0068609 Extl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068610.1 MGP_CASTEiJ_G0028054.1 mouse_genomes_project 4 133079490 133102436 - Extl1 protein_coding processed_transcript MGP_CASTEiJ_T0068611.1 MGP_CASTEiJ_G0028054.1 mouse_genomes_project 4 133081594 133084302 - Extl1 protein_coding processed_transcript MGP_CASTEiJ_T0066421.1 MGP_CASTEiJ_G0027605.1 mouse_genomes_project 4 95988781 96025859 - MGP_CASTEiJ_P0066421 Tm2d1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066422.1 MGP_CASTEiJ_G0027605.1 mouse_genomes_project 4 95988786 96007677 - MGP_CASTEiJ_P0066422 Tm2d1 protein_coding protein_coding MGP_CASTEiJ_T0066423.1 MGP_CASTEiJ_G0027605.1 mouse_genomes_project 4 95988786 96007677 - MGP_CASTEiJ_P0066423 Tm2d1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0014124.1 MGP_CASTEiJ_G0012287.1 mouse_genomes_project 4 69635490 69635823 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064986.1 MGP_CASTEiJ_G0027282.1 mouse_genomes_project 4 32001116 32026596 - MGP_CASTEiJ_P0064986 Slc35a1 protein_coding protein_coding MGP_CASTEiJ_T0064987.1 MGP_CASTEiJ_G0027282.1 mouse_genomes_project 4 32001752 32022620 - Slc35a1 protein_coding processed_transcript MGP_CASTEiJ_T0064988.1 MGP_CASTEiJ_G0027282.1 mouse_genomes_project 4 32007367 32022527 - MGP_CASTEiJ_P0064988 Slc35a1 protein_coding protein_coding MGP_CASTEiJ_T0064989.1 MGP_CASTEiJ_G0027282.1 mouse_genomes_project 4 32014106 32026413 - Slc35a1 protein_coding processed_transcript MGP_CASTEiJ_T0064990.1 MGP_CASTEiJ_G0027282.1 mouse_genomes_project 4 32022498 32026554 - Slc35a1 protein_coding processed_transcript MGP_CASTEiJ_T0101081.1 MGP_CASTEiJ_G0037994.1 mouse_genomes_project 4 121227443 121227574 + Gm22154 snoRNA snoRNA MGP_CASTEiJ_T0069613.1 MGP_CASTEiJ_G0028280.1 mouse_genomes_project 4 151492408 151499919 - MGP_CASTEiJ_P0069613 Thap3 protein_coding protein_coding MGP_CASTEiJ_T0069614.1 MGP_CASTEiJ_G0028280.1 mouse_genomes_project 4 151492571 151499892 - MGP_CASTEiJ_P0069614 Thap3 protein_coding protein_coding MGP_CASTEiJ_T0069615.1 MGP_CASTEiJ_G0028280.1 mouse_genomes_project 4 151495625 151499902 - Thap3 protein_coding retained_intron MGP_CASTEiJ_T0007690.1 MGP_CASTEiJ_G0006305.1 mouse_genomes_project 4 81448798 81452743 - Gm12414 lincRNA lincRNA MGP_CASTEiJ_T0001375.1 MGP_CASTEiJ_G0001304.1 mouse_genomes_project 4 142298696 142298915 + TEC TEC MGP_CASTEiJ_T0007812.1 MGP_CASTEiJ_G0006392.1 mouse_genomes_project 4 139188950 139198516 + Gm13028 lincRNA lincRNA MGP_CASTEiJ_T0102314.1 MGP_CASTEiJ_G0039039.1 mouse_genomes_project 4 93805580 93805758 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101062.1 MGP_CASTEiJ_G0037975.1 mouse_genomes_project 4 86713340 86713480 - Gm26490 snoRNA snoRNA MGP_CASTEiJ_T0069811.1 MGP_CASTEiJ_G0028311.1 mouse_genomes_project 4 154016738 154356188 - MGP_CASTEiJ_P0069811 Prdm16 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069812.1 MGP_CASTEiJ_G0028311.1 mouse_genomes_project 4 154016738 154356188 - MGP_CASTEiJ_P0069812 Prdm16 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069813.1 MGP_CASTEiJ_G0028311.1 mouse_genomes_project 4 154016746 154356117 - Prdm16 protein_coding processed_transcript MGP_CASTEiJ_T0069814.1 MGP_CASTEiJ_G0028311.1 mouse_genomes_project 4 154016746 154356117 - MGP_CASTEiJ_P0069814 Prdm16 protein_coding protein_coding MGP_CASTEiJ_T0069815.1 MGP_CASTEiJ_G0028311.1 mouse_genomes_project 4 154016746 154356117 - MGP_CASTEiJ_P0069815 Prdm16 protein_coding protein_coding MGP_CASTEiJ_T0069816.1 MGP_CASTEiJ_G0028311.1 mouse_genomes_project 4 154016746 154356117 - MGP_CASTEiJ_P0069816 Prdm16 protein_coding protein_coding MGP_CASTEiJ_T0069817.1 MGP_CASTEiJ_G0028311.1 mouse_genomes_project 4 154016746 154356117 - MGP_CASTEiJ_P0069817 Prdm16 protein_coding protein_coding MGP_CASTEiJ_T0069818.1 MGP_CASTEiJ_G0028311.1 mouse_genomes_project 4 154016746 154356117 - MGP_CASTEiJ_P0069818 Prdm16 protein_coding protein_coding MGP_CASTEiJ_T0069819.1 MGP_CASTEiJ_G0028311.1 mouse_genomes_project 4 154016746 154356117 - MGP_CASTEiJ_P0069819 Prdm16 protein_coding protein_coding MGP_CASTEiJ_T0069820.1 MGP_CASTEiJ_G0028311.1 mouse_genomes_project 4 154023957 154035472 - Prdm16 protein_coding processed_transcript MGP_CASTEiJ_T0069821.1 MGP_CASTEiJ_G0028311.1 mouse_genomes_project 4 154028869 154035542 - Prdm16 protein_coding processed_transcript MGP_CASTEiJ_T0069823.1 MGP_CASTEiJ_G0028311.1 mouse_genomes_project 4 154046732 154049051 - Prdm16 protein_coding processed_transcript MGP_CASTEiJ_T0069824.1 MGP_CASTEiJ_G0028311.1 mouse_genomes_project 4 154057662 154356124 - MGP_CASTEiJ_P0069824 Prdm16 protein_coding protein_coding MGP_CASTEiJ_T0069825.1 MGP_CASTEiJ_G0028311.1 mouse_genomes_project 4 154186213 154242094 - Prdm16 protein_coding processed_transcript MGP_CASTEiJ_T0069826.1 MGP_CASTEiJ_G0028311.1 mouse_genomes_project 4 154186244 154356048 - Prdm16 protein_coding processed_transcript MGP_CASTEiJ_T0064876.1 MGP_CASTEiJ_G0027259.1 mouse_genomes_project 4 23137336 23162431 - MGP_CASTEiJ_P0064876 Manea protein_coding protein_coding MGP_CASTEiJ_T0064877.1 MGP_CASTEiJ_G0027259.1 mouse_genomes_project 4 23138573 23162190 - MGP_CASTEiJ_P0064877 Manea protein_coding unknown_likely_coding MGP_CASTEiJ_T0064878.1 MGP_CASTEiJ_G0027259.1 mouse_genomes_project 4 23140876 23156426 - Manea protein_coding processed_transcript MGP_CASTEiJ_T0064879.1 MGP_CASTEiJ_G0027259.1 mouse_genomes_project 4 23155990 23162394 - Manea protein_coding processed_transcript MGP_CASTEiJ_T0064880.1 MGP_CASTEiJ_G0027259.1 mouse_genomes_project 4 23156281 23162431 - MGP_CASTEiJ_P0064880 Manea protein_coding protein_coding MGP_CASTEiJ_T0068714.1 MGP_CASTEiJ_G0028074.1 mouse_genomes_project 4 134312903 134338505 + Stpg1 protein_coding processed_transcript MGP_CASTEiJ_T0068715.1 MGP_CASTEiJ_G0028074.1 mouse_genomes_project 4 134314072 134357146 + Stpg1 protein_coding processed_transcript MGP_CASTEiJ_T0068716.1 MGP_CASTEiJ_G0028074.1 mouse_genomes_project 4 134314082 134360952 + MGP_CASTEiJ_P0068716 Stpg1 protein_coding protein_coding MGP_CASTEiJ_T0010317.1 MGP_CASTEiJ_G0008505.1 mouse_genomes_project 4 118722348 118722437 - Mir30c-1 miRNA miRNA MGP_CASTEiJ_T0064749.1 MGP_CASTEiJ_G0027226.1 mouse_genomes_project 4 12610931 12641828 + MGP_CASTEiJ_P0064749 Calb1 protein_coding protein_coding MGP_CASTEiJ_T0064750.1 MGP_CASTEiJ_G0027226.1 mouse_genomes_project 4 12610933 12629570 + Calb1 protein_coding retained_intron MGP_CASTEiJ_T0064751.1 MGP_CASTEiJ_G0027226.1 mouse_genomes_project 4 12616052 12629870 + Calb1 protein_coding retained_intron MGP_CASTEiJ_T0067189.1 MGP_CASTEiJ_G0027756.1 mouse_genomes_project 4 114180669 114184756 - MGP_CASTEiJ_P0067189 Tmem69 protein_coding protein_coding MGP_CASTEiJ_T0067190.1 MGP_CASTEiJ_G0027756.1 mouse_genomes_project 4 114180933 114181953 - Tmem69 protein_coding processed_transcript MGP_CASTEiJ_T0067191.1 MGP_CASTEiJ_G0027756.1 mouse_genomes_project 4 114181792 114184755 - MGP_CASTEiJ_P0067191 Tmem69 protein_coding protein_coding MGP_CASTEiJ_T0007631.1 MGP_CASTEiJ_G0006253.1 mouse_genomes_project 4 26083075 26084124 + Gm11916 lincRNA lincRNA MGP_CASTEiJ_T0066861.1 MGP_CASTEiJ_G0027686.1 mouse_genomes_project 4 106406236 106414599 - MGP_CASTEiJ_P0066861 Gpx7 protein_coding protein_coding MGP_CASTEiJ_T0066862.1 MGP_CASTEiJ_G0027686.1 mouse_genomes_project 4 106406695 106414362 - MGP_CASTEiJ_P0066862 Gpx7 protein_coding protein_coding MGP_CASTEiJ_T0004387.1 MGP_CASTEiJ_G0003820.1 mouse_genomes_project 4 115609403 115611756 + Gm12841 antisense antisense MGP_CASTEiJ_T0007718.1 MGP_CASTEiJ_G0006328.1 mouse_genomes_project 4 101058685 101079838 + 4930456L15Rik lincRNA lincRNA MGP_CASTEiJ_T0069184.1 MGP_CASTEiJ_G0028181.1 mouse_genomes_project 4 141045161 141051694 - MGP_CASTEiJ_P0069184 Tmem82 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069185.1 MGP_CASTEiJ_G0028181.1 mouse_genomes_project 4 141046022 141050018 - MGP_CASTEiJ_P0069185 Tmem82 protein_coding protein_coding MGP_CASTEiJ_T0069186.1 MGP_CASTEiJ_G0028181.1 mouse_genomes_project 4 141046026 141049761 - Tmem82 protein_coding retained_intron MGP_CASTEiJ_T0065561.1 MGP_CASTEiJ_G0027392.1 mouse_genomes_project 4 44014312 44048974 + MGP_CASTEiJ_P0065561 Ncbp1 protein_coding protein_coding MGP_CASTEiJ_T0065563.1 MGP_CASTEiJ_G0027392.1 mouse_genomes_project 4 44034747 44036895 + Ncbp1 protein_coding processed_transcript MGP_CASTEiJ_T0065564.1 MGP_CASTEiJ_G0027392.1 mouse_genomes_project 4 44041748 44048550 + Ncbp1 protein_coding processed_transcript MGP_CASTEiJ_T0065842.1 MGP_CASTEiJ_G0027465.1 mouse_genomes_project 4 57218905 57219847 - MGP_CASTEiJ_P0065842 Olfr267 protein_coding protein_coding MGP_CASTEiJ_T0067094.1 MGP_CASTEiJ_G0027738.1 mouse_genomes_project 4 113361262 113362448 - MGP_CASTEiJ_P0067094 Tex38 protein_coding protein_coding MGP_CASTEiJ_T0004453.1 MGP_CASTEiJ_G0003872.1 mouse_genomes_project 4 143992918 143994352 + Pramef12os antisense antisense MGP_CASTEiJ_T0067910.1 MGP_CASTEiJ_G0027918.1 mouse_genomes_project 4 125089029 125202888 - MGP_CASTEiJ_P0067910 Zmym4 protein_coding protein_coding MGP_CASTEiJ_T0067911.1 MGP_CASTEiJ_G0027918.1 mouse_genomes_project 4 125089029 125202888 - MGP_CASTEiJ_P0067911 Zmym4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067912.1 MGP_CASTEiJ_G0027918.1 mouse_genomes_project 4 125093915 125095722 - Zmym4 protein_coding processed_transcript MGP_CASTEiJ_T0067913.1 MGP_CASTEiJ_G0027918.1 mouse_genomes_project 4 125132885 125145207 - Zmym4 protein_coding processed_transcript MGP_CASTEiJ_T0067914.1 MGP_CASTEiJ_G0027918.1 mouse_genomes_project 4 125138131 125145095 - Zmym4 protein_coding processed_transcript MGP_CASTEiJ_T0067915.1 MGP_CASTEiJ_G0027918.1 mouse_genomes_project 4 125144924 125154320 - Zmym4 protein_coding processed_transcript MGP_CASTEiJ_T0067916.1 MGP_CASTEiJ_G0027918.1 mouse_genomes_project 4 125153958 125156684 - Zmym4 protein_coding processed_transcript MGP_CASTEiJ_T0067917.1 MGP_CASTEiJ_G0027918.1 mouse_genomes_project 4 125156682 125202857 - Zmym4 protein_coding processed_transcript MGP_CASTEiJ_T0067918.1 MGP_CASTEiJ_G0027918.1 mouse_genomes_project 4 125156715 125202881 - Zmym4 protein_coding processed_transcript MGP_CASTEiJ_T0066902.1 MGP_CASTEiJ_G0027695.1 mouse_genomes_project 4 106880160 106881381 - MGP_CASTEiJ_P0066902 A730015C16Rik protein_coding protein_coding MGP_CASTEiJ_T0065502.1 MGP_CASTEiJ_G0027380.1 mouse_genomes_project 4 43008466 43089869 + MGP_CASTEiJ_P0065502 Frmpd1 protein_coding protein_coding MGP_CASTEiJ_T0065503.1 MGP_CASTEiJ_G0027380.1 mouse_genomes_project 4 43008497 43113976 + MGP_CASTEiJ_P0065503 Frmpd1 protein_coding protein_coding MGP_CASTEiJ_T0065504.1 MGP_CASTEiJ_G0027380.1 mouse_genomes_project 4 43023755 43113982 + MGP_CASTEiJ_P0065504 Frmpd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065505.1 MGP_CASTEiJ_G0027380.1 mouse_genomes_project 4 43026899 43113976 + MGP_CASTEiJ_P0065505 Frmpd1 protein_coding protein_coding MGP_CASTEiJ_T0066010.1 MGP_CASTEiJ_G0027506.1 mouse_genomes_project 4 60539549 60554719 - MGP_CASTEiJ_P0066010 1700018C11Rik protein_coding protein_coding MGP_CASTEiJ_T0066011.1 MGP_CASTEiJ_G0027506.1 mouse_genomes_project 4 60539549 60554731 - MGP_CASTEiJ_P0066011 1700018C11Rik protein_coding protein_coding MGP_CASTEiJ_T0064862.1 MGP_CASTEiJ_G0027254.1 mouse_genomes_project 4 21735233 21740633 + Ndufaf4 protein_coding processed_transcript MGP_CASTEiJ_T0064863.1 MGP_CASTEiJ_G0027254.1 mouse_genomes_project 4 21735240 21740629 + MGP_CASTEiJ_P0064863 Ndufaf4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064864.1 MGP_CASTEiJ_G0027254.1 mouse_genomes_project 4 21735278 21740613 + MGP_CASTEiJ_P0064864 Ndufaf4 protein_coding protein_coding MGP_CASTEiJ_T0102324.1 MGP_CASTEiJ_G0039049.1 mouse_genomes_project 4 114819033 114822397 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0069283.1 MGP_CASTEiJ_G0028220.1 mouse_genomes_project 4 144857282 144908427 - MGP_CASTEiJ_P0069283 Tnfrsf8 protein_coding protein_coding MGP_CASTEiJ_T0069284.1 MGP_CASTEiJ_G0028220.1 mouse_genomes_project 4 144857284 144908444 - MGP_CASTEiJ_P0069284 Tnfrsf8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064670.1 MGP_CASTEiJ_G0027205.1 mouse_genomes_project 4 7935478 7992172 - MGP_CASTEiJ_P0064670 Esrp1 protein_coding protein_coding MGP_CASTEiJ_T0064671.1 MGP_CASTEiJ_G0027205.1 mouse_genomes_project 4 7935478 7992276 - MGP_CASTEiJ_P0064671 Esrp1 protein_coding protein_coding MGP_CASTEiJ_T0064672.1 MGP_CASTEiJ_G0027205.1 mouse_genomes_project 4 7935583 7992276 - MGP_CASTEiJ_P0064672 Esrp1 protein_coding protein_coding MGP_CASTEiJ_T0064673.1 MGP_CASTEiJ_G0027205.1 mouse_genomes_project 4 7936550 7992172 - MGP_CASTEiJ_P0064673 Esrp1 protein_coding protein_coding MGP_CASTEiJ_T0064674.1 MGP_CASTEiJ_G0027205.1 mouse_genomes_project 4 7936550 7972488 - MGP_CASTEiJ_P0064674 Esrp1 protein_coding protein_coding MGP_CASTEiJ_T0064675.1 MGP_CASTEiJ_G0027205.1 mouse_genomes_project 4 7936599 7992038 - MGP_CASTEiJ_P0064675 Esrp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064676.1 MGP_CASTEiJ_G0027205.1 mouse_genomes_project 4 7944191 7947679 - Esrp1 protein_coding processed_transcript MGP_CASTEiJ_T0064677.1 MGP_CASTEiJ_G0027205.1 mouse_genomes_project 4 7962284 7991887 - MGP_CASTEiJ_P0064677 Esrp1 protein_coding protein_coding MGP_CASTEiJ_T0066101.1 MGP_CASTEiJ_G0027530.1 mouse_genomes_project 4 77310942 77313720 - MGP_CASTEiJ_P0066101 mt-Nd6 protein_coding protein_coding MGP_CASTEiJ_T0068725.1 MGP_CASTEiJ_G0028079.1 mouse_genomes_project 4 134701778 134710746 + MGP_CASTEiJ_P0068725 protein_coding protein_coding MGP_CASTEiJ_T0068726.1 MGP_CASTEiJ_G0028079.1 mouse_genomes_project 4 134701778 134721324 + MGP_CASTEiJ_P0068726 protein_coding protein_coding MGP_CASTEiJ_T0068727.1 MGP_CASTEiJ_G0028079.1 mouse_genomes_project 4 134701778 134719377 + MGP_CASTEiJ_P0068727 protein_coding protein_coding MGP_CASTEiJ_T0068728.1 MGP_CASTEiJ_G0028079.1 mouse_genomes_project 4 134701909 134719377 + protein_coding processed_transcript MGP_CASTEiJ_T0068729.1 MGP_CASTEiJ_G0028079.1 mouse_genomes_project 4 134702143 134704838 + protein_coding processed_transcript MGP_CASTEiJ_T0068730.1 MGP_CASTEiJ_G0028079.1 mouse_genomes_project 4 134702163 134705268 + protein_coding processed_transcript MGP_CASTEiJ_T0068731.1 MGP_CASTEiJ_G0028079.1 mouse_genomes_project 4 134702234 134707941 + MGP_CASTEiJ_P0068731 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068732.1 MGP_CASTEiJ_G0028079.1 mouse_genomes_project 4 134707818 134715597 + protein_coding processed_transcript MGP_CASTEiJ_T0068733.1 MGP_CASTEiJ_G0028079.1 mouse_genomes_project 4 134715064 134715915 + MGP_CASTEiJ_P0068733 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014152.1 MGP_CASTEiJ_G0012315.1 mouse_genomes_project 4 77743812 77744296 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017365.1 MGP_CASTEiJ_G0014899.1 mouse_genomes_project 4 151969506 151973033 - Gm16334 processed_transcript processed_transcript MGP_CASTEiJ_T0068562.1 MGP_CASTEiJ_G0028042.1 mouse_genomes_project 4 132821927 132823312 - MGP_CASTEiJ_P0068562 Sh3bgrl3 protein_coding protein_coding MGP_CASTEiJ_T0068563.1 MGP_CASTEiJ_G0028042.1 mouse_genomes_project 4 132821934 132823262 - MGP_CASTEiJ_P0068563 Sh3bgrl3 protein_coding protein_coding MGP_CASTEiJ_T0068564.1 MGP_CASTEiJ_G0028042.1 mouse_genomes_project 4 132822361 132823260 - Sh3bgrl3 protein_coding retained_intron MGP_CASTEiJ_T0065491.1 MGP_CASTEiJ_G0027377.1 mouse_genomes_project 4 42827720 42842774 + MGP_CASTEiJ_P0065491 Polr1e protein_coding protein_coding MGP_CASTEiJ_T0065492.1 MGP_CASTEiJ_G0027377.1 mouse_genomes_project 4 42827799 42841448 + MGP_CASTEiJ_P0065492 Polr1e protein_coding protein_coding MGP_CASTEiJ_T0065493.1 MGP_CASTEiJ_G0027377.1 mouse_genomes_project 4 42827800 42845640 + MGP_CASTEiJ_P0065493 Polr1e protein_coding protein_coding MGP_CASTEiJ_T0065494.1 MGP_CASTEiJ_G0027377.1 mouse_genomes_project 4 42827834 42835963 + Polr1e protein_coding processed_transcript MGP_CASTEiJ_T0065495.1 MGP_CASTEiJ_G0027377.1 mouse_genomes_project 4 42828373 42841188 + MGP_CASTEiJ_P0065495 Polr1e protein_coding protein_coding MGP_CASTEiJ_T0065496.1 MGP_CASTEiJ_G0027377.1 mouse_genomes_project 4 42838213 42840452 + Polr1e protein_coding processed_transcript MGP_CASTEiJ_T0065497.1 MGP_CASTEiJ_G0027377.1 mouse_genomes_project 4 42840343 42841443 + Polr1e protein_coding processed_transcript MGP_CASTEiJ_T0014191.1 MGP_CASTEiJ_G0012354.1 mouse_genomes_project 4 95758817 95759273 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066974.1 MGP_CASTEiJ_G0027707.1 mouse_genomes_project 4 108064307 108069744 + MGP_CASTEiJ_P0066974 Dmrta2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0010281.1 MGP_CASTEiJ_G0008469.1 mouse_genomes_project 4 12672946 12673038 - Mir6400 miRNA miRNA MGP_CASTEiJ_T0014264.1 MGP_CASTEiJ_G0012427.1 mouse_genomes_project 4 119083822 119084345 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010312.1 MGP_CASTEiJ_G0008500.1 mouse_genomes_project 4 106061842 106061935 + Mir6397 miRNA miRNA MGP_CASTEiJ_T0069068.1 MGP_CASTEiJ_G0028158.1 mouse_genomes_project 4 140086926 140120719 - MGP_CASTEiJ_P0069068 Padi4 protein_coding protein_coding MGP_CASTEiJ_T0069069.1 MGP_CASTEiJ_G0028158.1 mouse_genomes_project 4 140093306 140098912 - Padi4 protein_coding processed_transcript MGP_CASTEiJ_T0069070.1 MGP_CASTEiJ_G0028158.1 mouse_genomes_project 4 140096896 140102809 - Padi4 protein_coding processed_transcript MGP_CASTEiJ_T0069071.1 MGP_CASTEiJ_G0028158.1 mouse_genomes_project 4 140099080 140102802 - Padi4 protein_coding processed_transcript MGP_CASTEiJ_T0010286.1 MGP_CASTEiJ_G0008474.1 mouse_genomes_project 4 34066378 34066459 - Mir876 miRNA miRNA MGP_CASTEiJ_T0014021.1 MGP_CASTEiJ_G0012184.1 mouse_genomes_project 4 29391955 29392900 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069518.1 MGP_CASTEiJ_G0028265.1 mouse_genomes_project 4 149446913 149472859 + MGP_CASTEiJ_P0069518 Slc2a5 protein_coding protein_coding MGP_CASTEiJ_T0069519.1 MGP_CASTEiJ_G0028265.1 mouse_genomes_project 4 149456517 149468117 + Slc2a5 protein_coding processed_transcript MGP_CASTEiJ_T0069520.1 MGP_CASTEiJ_G0028265.1 mouse_genomes_project 4 149467429 149470328 + Slc2a5 protein_coding retained_intron MGP_CASTEiJ_T0069521.1 MGP_CASTEiJ_G0028265.1 mouse_genomes_project 4 149467630 149470913 + Slc2a5 protein_coding processed_transcript MGP_CASTEiJ_T0099817.1 MGP_CASTEiJ_G0036730.1 mouse_genomes_project 4 112523018 112523151 - Gm23230 snRNA snRNA MGP_CASTEiJ_T0013937.1 MGP_CASTEiJ_G0012100.1 mouse_genomes_project 4 2395401 2396373 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099782.1 MGP_CASTEiJ_G0036695.1 mouse_genomes_project 4 38651309 38651413 + Gm25637 snRNA snRNA MGP_CASTEiJ_T0010339.1 MGP_CASTEiJ_G0008527.1 mouse_genomes_project 4 135543796 135543855 - Gm22180 miRNA miRNA MGP_CASTEiJ_T0014183.1 MGP_CASTEiJ_G0012346.1 mouse_genomes_project 4 91420187 91420445 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066292.1 MGP_CASTEiJ_G0027569.1 mouse_genomes_project 4 86293324 86295219 + MGP_CASTEiJ_P0066292 protein_coding protein_coding MGP_CASTEiJ_T0065580.1 MGP_CASTEiJ_G0027397.1 mouse_genomes_project 4 44339399 44362738 + MGP_CASTEiJ_P0065580 Anp32b protein_coding protein_coding MGP_CASTEiJ_T0065581.1 MGP_CASTEiJ_G0027397.1 mouse_genomes_project 4 44339749 44362741 + MGP_CASTEiJ_P0065581 Anp32b protein_coding unknown_likely_coding MGP_CASTEiJ_T0069585.1 MGP_CASTEiJ_G0028277.1 mouse_genomes_project 4 150477492 150490957 - MGP_CASTEiJ_P0069585 Vamp3 protein_coding protein_coding MGP_CASTEiJ_T0069586.1 MGP_CASTEiJ_G0028277.1 mouse_genomes_project 4 150480594 150490950 - Vamp3 protein_coding retained_intron MGP_CASTEiJ_T0069587.1 MGP_CASTEiJ_G0028277.1 mouse_genomes_project 4 150488917 150490967 - Vamp3 protein_coding retained_intron MGP_CASTEiJ_T0066015.1 MGP_CASTEiJ_G0027509.1 mouse_genomes_project 4 60774314 60804848 - MGP_CASTEiJ_P0066015 Tnfsf8 protein_coding protein_coding MGP_CASTEiJ_T0065807.1 MGP_CASTEiJ_G0027458.1 mouse_genomes_project 4 56112218 56260036 + protein_coding processed_transcript MGP_CASTEiJ_T0065808.1 MGP_CASTEiJ_G0027458.1 mouse_genomes_project 4 56136755 56300924 + MGP_CASTEiJ_P0065808 protein_coding protein_coding MGP_CASTEiJ_T0065809.1 MGP_CASTEiJ_G0027458.1 mouse_genomes_project 4 56146868 56300929 + MGP_CASTEiJ_P0065809 protein_coding protein_coding MGP_CASTEiJ_T0065810.1 MGP_CASTEiJ_G0027458.1 mouse_genomes_project 4 56185250 56258304 + MGP_CASTEiJ_P0065810 protein_coding protein_coding MGP_CASTEiJ_T0065811.1 MGP_CASTEiJ_G0027458.1 mouse_genomes_project 4 56232207 56258151 + MGP_CASTEiJ_P0065811 protein_coding protein_coding MGP_CASTEiJ_T0065813.1 MGP_CASTEiJ_G0027458.1 mouse_genomes_project 4 56256750 56300924 + MGP_CASTEiJ_P0065813 protein_coding protein_coding MGP_CASTEiJ_T0065814.1 MGP_CASTEiJ_G0027458.1 mouse_genomes_project 4 56256750 56300924 + MGP_CASTEiJ_P0065814 protein_coding protein_coding MGP_CASTEiJ_T0069711.1 MGP_CASTEiJ_G0028296.1 mouse_genomes_project 4 151886550 151941470 + MGP_CASTEiJ_P0069711 Chd5 protein_coding protein_coding MGP_CASTEiJ_T0069712.1 MGP_CASTEiJ_G0028296.1 mouse_genomes_project 4 151886550 151941470 + MGP_CASTEiJ_P0069712 Chd5 protein_coding protein_coding MGP_CASTEiJ_T0069713.1 MGP_CASTEiJ_G0028296.1 mouse_genomes_project 4 151886786 151941457 + MGP_CASTEiJ_P0069713 Chd5 protein_coding protein_coding MGP_CASTEiJ_T0069714.1 MGP_CASTEiJ_G0028296.1 mouse_genomes_project 4 151886789 151933081 + MGP_CASTEiJ_P0069714 Chd5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069715.1 MGP_CASTEiJ_G0028296.1 mouse_genomes_project 4 151889492 151901508 + Chd5 protein_coding processed_transcript MGP_CASTEiJ_T0069716.1 MGP_CASTEiJ_G0028296.1 mouse_genomes_project 4 151919358 151941457 + Chd5 protein_coding processed_transcript MGP_CASTEiJ_T0067458.1 MGP_CASTEiJ_G0027805.1 mouse_genomes_project 4 116443819 116444767 + MGP_CASTEiJ_P0067458 Olfr62 protein_coding protein_coding MGP_CASTEiJ_T0101036.1 MGP_CASTEiJ_G0037949.1 mouse_genomes_project 4 42167333 42167460 - Gm24376 snoRNA snoRNA MGP_CASTEiJ_T0014185.1 MGP_CASTEiJ_G0012348.1 mouse_genomes_project 4 92113138 92113715 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007827.1 MGP_CASTEiJ_G0006406.1 mouse_genomes_project 4 149082153 149091564 + Gm16188 lincRNA lincRNA MGP_CASTEiJ_T0070109.1 MGP_CASTEiJ_G0028361.1 mouse_genomes_project 4 155952608 155956404 - Agrn protein_coding retained_intron MGP_CASTEiJ_T0070110.1 MGP_CASTEiJ_G0028361.1 mouse_genomes_project 4 155952608 155973200 - MGP_CASTEiJ_P0070110 Agrn protein_coding protein_coding MGP_CASTEiJ_T0070111.1 MGP_CASTEiJ_G0028361.1 mouse_genomes_project 4 155952608 155973200 - MGP_CASTEiJ_P0070111 Agrn protein_coding protein_coding MGP_CASTEiJ_T0070112.1 MGP_CASTEiJ_G0028361.1 mouse_genomes_project 4 155952608 155973200 - MGP_CASTEiJ_P0070112 Agrn protein_coding protein_coding MGP_CASTEiJ_T0070113.1 MGP_CASTEiJ_G0028361.1 mouse_genomes_project 4 155952612 155973406 - Agrn protein_coding retained_intron MGP_CASTEiJ_T0070114.1 MGP_CASTEiJ_G0028361.1 mouse_genomes_project 4 155953096 155984771 - MGP_CASTEiJ_P0070114 Agrn protein_coding protein_coding MGP_CASTEiJ_T0070115.1 MGP_CASTEiJ_G0028361.1 mouse_genomes_project 4 155959627 155961061 - Agrn protein_coding processed_transcript MGP_CASTEiJ_T0004342.1 MGP_CASTEiJ_G0003791.1 mouse_genomes_project 4 83962788 83964168 + Saxo1os antisense antisense MGP_CASTEiJ_T0065843.1 MGP_CASTEiJ_G0027466.1 mouse_genomes_project 4 57238404 57358386 - MGP_CASTEiJ_P0065843 AI314180 protein_coding protein_coding MGP_CASTEiJ_T0065844.1 MGP_CASTEiJ_G0027466.1 mouse_genomes_project 4 57250120 57251340 - AI314180 protein_coding processed_transcript MGP_CASTEiJ_T0065845.1 MGP_CASTEiJ_G0027466.1 mouse_genomes_project 4 57250926 57357562 - MGP_CASTEiJ_P0065845 AI314180 protein_coding protein_coding MGP_CASTEiJ_T0065846.1 MGP_CASTEiJ_G0027466.1 mouse_genomes_project 4 57254778 57259046 - AI314180 protein_coding processed_transcript MGP_CASTEiJ_T0065847.1 MGP_CASTEiJ_G0027466.1 mouse_genomes_project 4 57258796 57274620 - AI314180 protein_coding processed_transcript MGP_CASTEiJ_T0065848.1 MGP_CASTEiJ_G0027466.1 mouse_genomes_project 4 57271096 57357559 - MGP_CASTEiJ_P0065848 AI314180 protein_coding protein_coding MGP_CASTEiJ_T0065849.1 MGP_CASTEiJ_G0027466.1 mouse_genomes_project 4 57273258 57275469 - AI314180 protein_coding processed_transcript MGP_CASTEiJ_T0065850.1 MGP_CASTEiJ_G0027466.1 mouse_genomes_project 4 57276609 57286058 - AI314180 protein_coding processed_transcript MGP_CASTEiJ_T0065851.1 MGP_CASTEiJ_G0027466.1 mouse_genomes_project 4 57285321 57358341 - MGP_CASTEiJ_P0065851 AI314180 protein_coding protein_coding MGP_CASTEiJ_T0065852.1 MGP_CASTEiJ_G0027466.1 mouse_genomes_project 4 57303091 57358386 - MGP_CASTEiJ_P0065852 AI314180 protein_coding protein_coding MGP_CASTEiJ_T0065853.1 MGP_CASTEiJ_G0027466.1 mouse_genomes_project 4 57313775 57357534 - MGP_CASTEiJ_P0065853 AI314180 protein_coding protein_coding MGP_CASTEiJ_T0068982.1 MGP_CASTEiJ_G0028138.1 mouse_genomes_project 4 138122526 138174219 + MGP_CASTEiJ_P0068982 Tmco4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068983.1 MGP_CASTEiJ_G0028138.1 mouse_genomes_project 4 138122605 138142034 + MGP_CASTEiJ_P0068983 Tmco4 protein_coding protein_coding MGP_CASTEiJ_T0068984.1 MGP_CASTEiJ_G0028138.1 mouse_genomes_project 4 138122609 138215429 + MGP_CASTEiJ_P0068984 Tmco4 protein_coding protein_coding MGP_CASTEiJ_T0068985.1 MGP_CASTEiJ_G0028138.1 mouse_genomes_project 4 138122622 138215425 + MGP_CASTEiJ_P0068985 Tmco4 protein_coding protein_coding MGP_CASTEiJ_T0068986.1 MGP_CASTEiJ_G0028138.1 mouse_genomes_project 4 138122626 138191396 + Tmco4 protein_coding processed_transcript MGP_CASTEiJ_T0070037.1 MGP_CASTEiJ_G0028350.1 mouse_genomes_project 4 155680787 155699488 + Cpsf3l protein_coding processed_transcript MGP_CASTEiJ_T0070038.1 MGP_CASTEiJ_G0028350.1 mouse_genomes_project 4 155680787 155699892 + MGP_CASTEiJ_P0070038 Cpsf3l protein_coding protein_coding MGP_CASTEiJ_T0070039.1 MGP_CASTEiJ_G0028350.1 mouse_genomes_project 4 155680787 155699474 + MGP_CASTEiJ_P0070039 Cpsf3l protein_coding protein_coding MGP_CASTEiJ_T0070040.1 MGP_CASTEiJ_G0028350.1 mouse_genomes_project 4 155680808 155683546 + Cpsf3l protein_coding retained_intron MGP_CASTEiJ_T0070041.1 MGP_CASTEiJ_G0028350.1 mouse_genomes_project 4 155680856 155697719 + MGP_CASTEiJ_P0070041 Cpsf3l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070042.1 MGP_CASTEiJ_G0028350.1 mouse_genomes_project 4 155698577 155699277 + Cpsf3l protein_coding retained_intron MGP_CASTEiJ_T0070044.1 MGP_CASTEiJ_G0028350.1 mouse_genomes_project 4 155698915 155699522 + Cpsf3l protein_coding retained_intron MGP_CASTEiJ_T0066687.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104812853 104938677 + Ssbp3 protein_coding processed_transcript MGP_CASTEiJ_T0066688.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104815376 104958544 + MGP_CASTEiJ_P0066688 Ssbp3 protein_coding protein_coding MGP_CASTEiJ_T0066689.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104815417 104947645 + MGP_CASTEiJ_P0066689 Ssbp3 protein_coding protein_coding MGP_CASTEiJ_T0066690.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104815439 104957417 + MGP_CASTEiJ_P0066690 Ssbp3 protein_coding protein_coding MGP_CASTEiJ_T0066691.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104815573 104957348 + MGP_CASTEiJ_P0066691 Ssbp3 protein_coding protein_coding MGP_CASTEiJ_T0066692.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104815767 104918238 + Ssbp3 protein_coding processed_transcript MGP_CASTEiJ_T0066693.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104816204 104957365 + Ssbp3 protein_coding processed_transcript MGP_CASTEiJ_T0066694.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104827086 104938629 + Ssbp3 protein_coding processed_transcript MGP_CASTEiJ_T0066695.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104827126 104947151 + Ssbp3 protein_coding processed_transcript MGP_CASTEiJ_T0066696.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104846641 104957394 + Ssbp3 protein_coding processed_transcript MGP_CASTEiJ_T0066697.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104861987 104957542 + Ssbp3 protein_coding processed_transcript MGP_CASTEiJ_T0066698.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104874149 104938675 + MGP_CASTEiJ_P0066698 Ssbp3 protein_coding protein_coding MGP_CASTEiJ_T0066699.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104935810 104946270 + Ssbp3 protein_coding processed_transcript MGP_CASTEiJ_T0066700.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104938439 104939093 + Ssbp3 protein_coding processed_transcript MGP_CASTEiJ_T0066701.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104947104 104957369 + Ssbp3 protein_coding processed_transcript MGP_CASTEiJ_T0066702.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104947135 104949556 + Ssbp3 protein_coding processed_transcript MGP_CASTEiJ_T0066703.1 MGP_CASTEiJ_G0027660.1 mouse_genomes_project 4 104955801 104957300 + Ssbp3 protein_coding processed_transcript MGP_CASTEiJ_T0068052.1 MGP_CASTEiJ_G0027946.1 mouse_genomes_project 4 127615619 127623953 - MGP_CASTEiJ_P0068052 C77080 protein_coding protein_coding MGP_CASTEiJ_T0068053.1 MGP_CASTEiJ_G0027946.1 mouse_genomes_project 4 127615619 127637401 - MGP_CASTEiJ_P0068053 C77080 protein_coding protein_coding MGP_CASTEiJ_T0068054.1 MGP_CASTEiJ_G0027946.1 mouse_genomes_project 4 127617467 127646604 - MGP_CASTEiJ_P0068054 C77080 protein_coding protein_coding MGP_CASTEiJ_T0068055.1 MGP_CASTEiJ_G0027946.1 mouse_genomes_project 4 127621401 127664208 - MGP_CASTEiJ_P0068055 C77080 protein_coding protein_coding MGP_CASTEiJ_T0068852.1 MGP_CASTEiJ_G0028112.1 mouse_genomes_project 4 136469325 136580256 + MGP_CASTEiJ_P0068852 Hspg2 protein_coding protein_coding MGP_CASTEiJ_T0068853.1 MGP_CASTEiJ_G0028112.1 mouse_genomes_project 4 136469357 136580255 + MGP_CASTEiJ_P0068853 Hspg2 protein_coding protein_coding MGP_CASTEiJ_T0068854.1 MGP_CASTEiJ_G0028112.1 mouse_genomes_project 4 136578788 136579742 + Hspg2 protein_coding processed_transcript MGP_CASTEiJ_T0004394.1 MGP_CASTEiJ_G0003827.1 mouse_genomes_project 4 118199432 118213811 + Foxo6os antisense antisense MGP_CASTEiJ_T0066829.1 MGP_CASTEiJ_G0027680.1 mouse_genomes_project 4 106015364 106096570 - protein_coding processed_transcript MGP_CASTEiJ_T0066830.1 MGP_CASTEiJ_G0027680.1 mouse_genomes_project 4 106016941 106096630 - MGP_CASTEiJ_P0066830 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066831.1 MGP_CASTEiJ_G0027680.1 mouse_genomes_project 4 106061497 106096598 - MGP_CASTEiJ_P0066831 protein_coding protein_coding MGP_CASTEiJ_T0066832.1 MGP_CASTEiJ_G0027680.1 mouse_genomes_project 4 106065528 106096489 - protein_coding processed_transcript MGP_CASTEiJ_T0066833.1 MGP_CASTEiJ_G0027680.1 mouse_genomes_project 4 106065841 106125564 - protein_coding processed_transcript MGP_CASTEiJ_T0066834.1 MGP_CASTEiJ_G0027680.1 mouse_genomes_project 4 106077707 106125568 - MGP_CASTEiJ_P0066834 protein_coding protein_coding MGP_CASTEiJ_T0102331.1 MGP_CASTEiJ_G0039056.1 mouse_genomes_project 4 120593767 120598227 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102310.1 MGP_CASTEiJ_G0039035.1 mouse_genomes_project 4 86155495 86156005 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0065090.1 MGP_CASTEiJ_G0027309.1 mouse_genomes_project 4 38734022 38744736 - MGP_CASTEiJ_P0065090 Nol6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065091.1 MGP_CASTEiJ_G0027309.1 mouse_genomes_project 4 38734023 38744946 - MGP_CASTEiJ_P0065091 Nol6 protein_coding protein_coding MGP_CASTEiJ_T0065092.1 MGP_CASTEiJ_G0027309.1 mouse_genomes_project 4 38740941 38742910 - Nol6 protein_coding processed_transcript MGP_CASTEiJ_T0065093.1 MGP_CASTEiJ_G0027309.1 mouse_genomes_project 4 38741157 38743145 - Nol6 protein_coding processed_transcript MGP_CASTEiJ_T0065094.1 MGP_CASTEiJ_G0027309.1 mouse_genomes_project 4 38741489 38742365 - Nol6 protein_coding processed_transcript MGP_CASTEiJ_T0068992.1 MGP_CASTEiJ_G0028141.1 mouse_genomes_project 4 138269529 138296186 - MGP_CASTEiJ_P0068992 Minos1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068993.1 MGP_CASTEiJ_G0028141.1 mouse_genomes_project 4 138269657 138271816 - Minos1 protein_coding processed_transcript MGP_CASTEiJ_T0068994.1 MGP_CASTEiJ_G0028141.1 mouse_genomes_project 4 138269689 138277292 - Minos1 protein_coding processed_transcript MGP_CASTEiJ_T0068995.1 MGP_CASTEiJ_G0028141.1 mouse_genomes_project 4 138269768 138296164 - Minos1 protein_coding processed_transcript MGP_CASTEiJ_T0014043.1 MGP_CASTEiJ_G0012206.1 mouse_genomes_project 4 36217039 36218845 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070117.1 MGP_CASTEiJ_G0028363.1 mouse_genomes_project 4 155990958 155992799 + MGP_CASTEiJ_P0070117 AW011738 protein_coding protein_coding MGP_CASTEiJ_T0069214.1 MGP_CASTEiJ_G0028191.1 mouse_genomes_project 4 141294013 141310989 - MGP_CASTEiJ_P0069214 Efhd2 protein_coding protein_coding MGP_CASTEiJ_T0014294.1 MGP_CASTEiJ_G0012457.1 mouse_genomes_project 4 128213199 128213488 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014089.1 MGP_CASTEiJ_G0012252.1 mouse_genomes_project 4 53080328 53081910 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014143.1 MGP_CASTEiJ_G0012306.1 mouse_genomes_project 4 73974219 73974456 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066900.1 MGP_CASTEiJ_G0027694.1 mouse_genomes_project 4 106867418 106894907 + MGP_CASTEiJ_P0066900 Txndc12 protein_coding protein_coding MGP_CASTEiJ_T0066901.1 MGP_CASTEiJ_G0027694.1 mouse_genomes_project 4 106867452 106879237 + Txndc12 protein_coding processed_transcript MGP_CASTEiJ_T0066904.1 MGP_CASTEiJ_G0027694.1 mouse_genomes_project 4 106890261 106892067 + Txndc12 protein_coding processed_transcript MGP_CASTEiJ_T0068826.1 MGP_CASTEiJ_G0028100.1 mouse_genomes_project 4 135558133 135579895 + MGP_CASTEiJ_P0068826 Lactbl1 protein_coding protein_coding MGP_CASTEiJ_T0067690.1 MGP_CASTEiJ_G0027868.1 mouse_genomes_project 4 121246896 121294850 - MGP_CASTEiJ_P0067690 Bmp8a protein_coding protein_coding MGP_CASTEiJ_T0067691.1 MGP_CASTEiJ_G0027868.1 mouse_genomes_project 4 121258070 121294210 - MGP_CASTEiJ_P0067691 Bmp8a protein_coding unknown_likely_coding MGP_CASTEiJ_T0014049.1 MGP_CASTEiJ_G0012212.1 mouse_genomes_project 4 37646915 37648802 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007600.1 MGP_CASTEiJ_G0006228.1 mouse_genomes_project 4 132533 140330 + 2210414B05Rik lincRNA lincRNA MGP_CASTEiJ_T0010321.1 MGP_CASTEiJ_G0008509.1 mouse_genomes_project 4 121584695 121584797 + Mir6398 miRNA miRNA MGP_CASTEiJ_T0013999.1 MGP_CASTEiJ_G0012162.1 mouse_genomes_project 4 22694012 22694480 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068666.1 MGP_CASTEiJ_G0028067.1 mouse_genomes_project 4 133694688 133703141 + MGP_CASTEiJ_P0068666 Syf2 protein_coding protein_coding MGP_CASTEiJ_T0068667.1 MGP_CASTEiJ_G0028067.1 mouse_genomes_project 4 133694692 133698794 + Syf2 protein_coding retained_intron MGP_CASTEiJ_T0068668.1 MGP_CASTEiJ_G0028067.1 mouse_genomes_project 4 133694800 133699819 + Syf2 protein_coding retained_intron MGP_CASTEiJ_T0067814.1 MGP_CASTEiJ_G0027899.1 mouse_genomes_project 4 124266409 124268349 + MGP_CASTEiJ_P0067814 Lsm10 protein_coding protein_coding MGP_CASTEiJ_T0067815.1 MGP_CASTEiJ_G0027899.1 mouse_genomes_project 4 124266439 124268346 + MGP_CASTEiJ_P0067815 Lsm10 protein_coding protein_coding MGP_CASTEiJ_T0067816.1 MGP_CASTEiJ_G0027899.1 mouse_genomes_project 4 124266446 124267898 + MGP_CASTEiJ_P0067816 Lsm10 protein_coding protein_coding MGP_CASTEiJ_T0065735.1 MGP_CASTEiJ_G0027442.1 mouse_genomes_project 4 52028369 52067288 + MGP_CASTEiJ_P0065735 Tmem38b protein_coding unknown_likely_coding MGP_CASTEiJ_T0065736.1 MGP_CASTEiJ_G0027442.1 mouse_genomes_project 4 52028438 52068704 + MGP_CASTEiJ_P0065736 Tmem38b protein_coding protein_coding MGP_CASTEiJ_T0065737.1 MGP_CASTEiJ_G0027442.1 mouse_genomes_project 4 52028448 52035061 + Tmem38b protein_coding processed_transcript MGP_CASTEiJ_T0065738.1 MGP_CASTEiJ_G0027442.1 mouse_genomes_project 4 52028450 52050887 + Tmem38b protein_coding processed_transcript MGP_CASTEiJ_T0065739.1 MGP_CASTEiJ_G0027442.1 mouse_genomes_project 4 52043510 52061739 + MGP_CASTEiJ_P0065739 Tmem38b protein_coding protein_coding MGP_CASTEiJ_T0014018.1 MGP_CASTEiJ_G0012181.1 mouse_genomes_project 4 27804414 27804975 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070087.1 MGP_CASTEiJ_G0028358.1 mouse_genomes_project 4 155819126 155821849 + MGP_CASTEiJ_P0070087 Tnfrsf18 protein_coding protein_coding MGP_CASTEiJ_T0070088.1 MGP_CASTEiJ_G0028358.1 mouse_genomes_project 4 155819293 155821845 + Tnfrsf18 protein_coding retained_intron MGP_CASTEiJ_T0070089.1 MGP_CASTEiJ_G0028358.1 mouse_genomes_project 4 155819303 155821845 + MGP_CASTEiJ_P0070089 Tnfrsf18 protein_coding protein_coding MGP_CASTEiJ_T0070090.1 MGP_CASTEiJ_G0028358.1 mouse_genomes_project 4 155819303 155821845 + MGP_CASTEiJ_P0070090 Tnfrsf18 protein_coding protein_coding MGP_CASTEiJ_T0070091.1 MGP_CASTEiJ_G0028358.1 mouse_genomes_project 4 155819339 155821328 + Tnfrsf18 protein_coding processed_transcript MGP_CASTEiJ_T0070092.1 MGP_CASTEiJ_G0028358.1 mouse_genomes_project 4 155821324 155821849 + Tnfrsf18 protein_coding processed_transcript MGP_CASTEiJ_T0065781.1 MGP_CASTEiJ_G0027453.1 mouse_genomes_project 4 55296587 55333816 - MGP_CASTEiJ_P0065781 Frrs1l protein_coding protein_coding MGP_CASTEiJ_T0065782.1 MGP_CASTEiJ_G0027453.1 mouse_genomes_project 4 55299543 55333561 - MGP_CASTEiJ_P0065782 Frrs1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065783.1 MGP_CASTEiJ_G0027453.1 mouse_genomes_project 4 55302306 55333733 - MGP_CASTEiJ_P0065783 Frrs1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0010326.1 MGP_CASTEiJ_G0008514.1 mouse_genomes_project 4 127992741 127992870 - Mir8119 miRNA miRNA MGP_CASTEiJ_T0068072.1 MGP_CASTEiJ_G0027952.1 mouse_genomes_project 4 127884595 127911303 + MGP_CASTEiJ_P0068072 Bsdc1 protein_coding protein_coding MGP_CASTEiJ_T0068073.1 MGP_CASTEiJ_G0027952.1 mouse_genomes_project 4 127884660 127911687 + MGP_CASTEiJ_P0068073 Bsdc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068074.1 MGP_CASTEiJ_G0027952.1 mouse_genomes_project 4 127884686 127890057 + Bsdc1 protein_coding processed_transcript MGP_CASTEiJ_T0068075.1 MGP_CASTEiJ_G0027952.1 mouse_genomes_project 4 127884698 127893232 + Bsdc1 protein_coding retained_intron MGP_CASTEiJ_T0068076.1 MGP_CASTEiJ_G0027952.1 mouse_genomes_project 4 127884698 127890045 + Bsdc1 protein_coding processed_transcript MGP_CASTEiJ_T0068077.1 MGP_CASTEiJ_G0027952.1 mouse_genomes_project 4 127884701 127889014 + Bsdc1 protein_coding retained_intron MGP_CASTEiJ_T0068078.1 MGP_CASTEiJ_G0027952.1 mouse_genomes_project 4 127884850 127890057 + MGP_CASTEiJ_P0068078 Bsdc1 protein_coding protein_coding MGP_CASTEiJ_T0068079.1 MGP_CASTEiJ_G0027952.1 mouse_genomes_project 4 127887592 127888595 + Bsdc1 protein_coding processed_transcript MGP_CASTEiJ_T0068080.1 MGP_CASTEiJ_G0027952.1 mouse_genomes_project 4 127894939 127896979 + Bsdc1 protein_coding retained_intron MGP_CASTEiJ_T0011251.1 MGP_CASTEiJ_G0009439.1 mouse_genomes_project 4 119098234 119098553 + Gm22982 misc_RNA misc_RNA MGP_CASTEiJ_T0065530.1 MGP_CASTEiJ_G0027386.1 mouse_genomes_project 4 43672533 43691026 - MGP_CASTEiJ_P0065530 Igfbpl1 protein_coding protein_coding MGP_CASTEiJ_T0065531.1 MGP_CASTEiJ_G0027386.1 mouse_genomes_project 4 43675797 43679194 - Igfbpl1 protein_coding processed_transcript MGP_CASTEiJ_T0102305.1 MGP_CASTEiJ_G0039030.1 mouse_genomes_project 4 58482869 58988962 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0067317.1 MGP_CASTEiJ_G0027779.1 mouse_genomes_project 4 114932435 114952754 + MGP_CASTEiJ_P0067317 Tmem53 protein_coding protein_coding MGP_CASTEiJ_T0067318.1 MGP_CASTEiJ_G0027779.1 mouse_genomes_project 4 114932524 114952688 + MGP_CASTEiJ_P0067318 Tmem53 protein_coding protein_coding MGP_CASTEiJ_T0067319.1 MGP_CASTEiJ_G0027779.1 mouse_genomes_project 4 114932526 114952756 + MGP_CASTEiJ_P0067319 Tmem53 protein_coding protein_coding MGP_CASTEiJ_T0067320.1 MGP_CASTEiJ_G0027779.1 mouse_genomes_project 4 114932546 114952070 + Tmem53 protein_coding processed_transcript MGP_CASTEiJ_T0067321.1 MGP_CASTEiJ_G0027779.1 mouse_genomes_project 4 114932825 114952754 + MGP_CASTEiJ_P0067321 Tmem53 protein_coding protein_coding MGP_CASTEiJ_T0067322.1 MGP_CASTEiJ_G0027779.1 mouse_genomes_project 4 114949546 114952756 + Tmem53 protein_coding processed_transcript MGP_CASTEiJ_T0065528.1 MGP_CASTEiJ_G0027385.1 mouse_genomes_project 4 43657951 43663415 + MGP_CASTEiJ_P0065528 Aldh1b1 protein_coding protein_coding MGP_CASTEiJ_T0065529.1 MGP_CASTEiJ_G0027385.1 mouse_genomes_project 4 43658050 43661667 + MGP_CASTEiJ_P0065529 Aldh1b1 protein_coding protein_coding MGP_CASTEiJ_T0066905.1 MGP_CASTEiJ_G0027697.1 mouse_genomes_project 4 106912944 106979480 + MGP_CASTEiJ_P0066905 Rab3b protein_coding protein_coding MGP_CASTEiJ_T0066906.1 MGP_CASTEiJ_G0027697.1 mouse_genomes_project 4 106913081 106976341 + MGP_CASTEiJ_P0066906 Rab3b protein_coding protein_coding MGP_CASTEiJ_T0066907.1 MGP_CASTEiJ_G0027697.1 mouse_genomes_project 4 106923701 106976344 + MGP_CASTEiJ_P0066907 Rab3b protein_coding protein_coding MGP_CASTEiJ_T0066908.1 MGP_CASTEiJ_G0027697.1 mouse_genomes_project 4 106974312 106976062 + Rab3b protein_coding processed_transcript MGP_CASTEiJ_T0069827.1 MGP_CASTEiJ_G0028313.1 mouse_genomes_project 4 154389130 154390565 - MGP_CASTEiJ_P0069827 Actrt2 protein_coding protein_coding MGP_CASTEiJ_T0098942.1 MGP_CASTEiJ_G0035866.1 mouse_genomes_project 4 92757236 92765429 + Gm28096 sense_intronic sense_intronic MGP_CASTEiJ_T0010353.1 MGP_CASTEiJ_G0008541.1 mouse_genomes_project 4 148947837 148947901 - Mir7023 miRNA miRNA MGP_CASTEiJ_T0102325.1 MGP_CASTEiJ_G0039050.1 mouse_genomes_project 4 116451133 116452048 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0014126.1 MGP_CASTEiJ_G0012289.1 mouse_genomes_project 4 70143336 70151456 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066448.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96599373 96797230 - MGP_CASTEiJ_P0066448 Dock7 protein_coding protein_coding MGP_CASTEiJ_T0066449.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96599556 96616870 - Dock7 protein_coding processed_transcript MGP_CASTEiJ_T0066450.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96599557 96797089 - MGP_CASTEiJ_P0066450 Dock7 protein_coding protein_coding MGP_CASTEiJ_T0066451.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96599559 96797089 - MGP_CASTEiJ_P0066451 Dock7 protein_coding protein_coding MGP_CASTEiJ_T0066452.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96599559 96695074 - MGP_CASTEiJ_P0066452 Dock7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066453.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96599933 96699549 - MGP_CASTEiJ_P0066453 Dock7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066454.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96599961 96797089 - MGP_CASTEiJ_P0066454 Dock7 protein_coding protein_coding MGP_CASTEiJ_T0066455.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96606696 96607651 - Dock7 protein_coding retained_intron MGP_CASTEiJ_T0066456.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96606699 96612812 - Dock7 protein_coding retained_intron MGP_CASTEiJ_T0066457.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96607103 96619278 - Dock7 protein_coding processed_transcript MGP_CASTEiJ_T0066458.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96608008 96622357 - MGP_CASTEiJ_P0066458 Dock7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066459.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96619644 96627520 - Dock7 protein_coding retained_intron MGP_CASTEiJ_T0066460.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96623226 96624153 - Dock7 protein_coding processed_transcript MGP_CASTEiJ_T0066461.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96655645 96678847 - MGP_CASTEiJ_P0066461 Dock7 protein_coding protein_coding MGP_CASTEiJ_T0066462.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96659197 96678812 - MGP_CASTEiJ_P0066462 Dock7 protein_coding protein_coding MGP_CASTEiJ_T0066463.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96660426 96662665 - Dock7 protein_coding retained_intron MGP_CASTEiJ_T0066464.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96670127 96678022 - Dock7 protein_coding processed_transcript MGP_CASTEiJ_T0066465.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96677482 96728093 - MGP_CASTEiJ_P0066465 Dock7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066469.1 MGP_CASTEiJ_G0027611.1 mouse_genomes_project 4 96736521 96739835 - Dock7 protein_coding retained_intron MGP_CASTEiJ_T0010313.1 MGP_CASTEiJ_G0008501.1 mouse_genomes_project 4 107055518 107055594 + Mir761 miRNA miRNA MGP_CASTEiJ_T0066014.1 MGP_CASTEiJ_G0027508.1 mouse_genomes_project 4 60669085 60686409 - MGP_CASTEiJ_P0066014 Tnfsf15 protein_coding protein_coding MGP_CASTEiJ_T0066944.1 MGP_CASTEiJ_G0027701.1 mouse_genomes_project 4 107331443 107437083 + MGP_CASTEiJ_P0066944 Eps15 protein_coding protein_coding MGP_CASTEiJ_T0066945.1 MGP_CASTEiJ_G0027701.1 mouse_genomes_project 4 107331478 107434940 + MGP_CASTEiJ_P0066945 Eps15 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066946.1 MGP_CASTEiJ_G0027701.1 mouse_genomes_project 4 107331551 107362175 + MGP_CASTEiJ_P0066946 Eps15 protein_coding protein_coding MGP_CASTEiJ_T0066947.1 MGP_CASTEiJ_G0027701.1 mouse_genomes_project 4 107331587 107434725 + MGP_CASTEiJ_P0066947 Eps15 protein_coding protein_coding MGP_CASTEiJ_T0066948.1 MGP_CASTEiJ_G0027701.1 mouse_genomes_project 4 107331587 107434725 + MGP_CASTEiJ_P0066948 Eps15 protein_coding protein_coding MGP_CASTEiJ_T0066949.1 MGP_CASTEiJ_G0027701.1 mouse_genomes_project 4 107353635 107355099 + Eps15 protein_coding retained_intron MGP_CASTEiJ_T0066950.1 MGP_CASTEiJ_G0027701.1 mouse_genomes_project 4 107358412 107362474 + Eps15 protein_coding retained_intron MGP_CASTEiJ_T0066951.1 MGP_CASTEiJ_G0027701.1 mouse_genomes_project 4 107395274 107435819 + MGP_CASTEiJ_P0066951 Eps15 protein_coding protein_coding MGP_CASTEiJ_T0066952.1 MGP_CASTEiJ_G0027701.1 mouse_genomes_project 4 107395468 107412769 + Eps15 protein_coding retained_intron MGP_CASTEiJ_T0066953.1 MGP_CASTEiJ_G0027701.1 mouse_genomes_project 4 107418747 107435036 + MGP_CASTEiJ_P0066953 Eps15 protein_coding protein_coding MGP_CASTEiJ_T0066954.1 MGP_CASTEiJ_G0027701.1 mouse_genomes_project 4 107418791 107432132 + Eps15 protein_coding processed_transcript MGP_CASTEiJ_T0064744.1 MGP_CASTEiJ_G0027224.1 mouse_genomes_project 4 11641671 11833347 - MGP_CASTEiJ_P0064744 Necab1 protein_coding protein_coding MGP_CASTEiJ_T0064745.1 MGP_CASTEiJ_G0027224.1 mouse_genomes_project 4 11644354 11834010 - MGP_CASTEiJ_P0064745 Necab1 protein_coding protein_coding MGP_CASTEiJ_T0064746.1 MGP_CASTEiJ_G0027224.1 mouse_genomes_project 4 11794224 11833177 - Necab1 protein_coding processed_transcript MGP_CASTEiJ_T0017364.1 MGP_CASTEiJ_G0014898.1 mouse_genomes_project 4 151900116 151901523 - Gm13645 processed_transcript processed_transcript MGP_CASTEiJ_T0014044.1 MGP_CASTEiJ_G0012207.1 mouse_genomes_project 4 36836571 36837331 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014146.1 MGP_CASTEiJ_G0012309.1 mouse_genomes_project 4 75488625 75489567 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004340.1 MGP_CASTEiJ_G0003789.1 mouse_genomes_project 4 79973577 79974457 + Gm11269 antisense antisense MGP_CASTEiJ_T0013974.1 MGP_CASTEiJ_G0012137.1 mouse_genomes_project 4 14023766 14024027 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004309.1 MGP_CASTEiJ_G0003761.1 mouse_genomes_project 4 32341508 32346254 + Gm12364 antisense antisense MGP_CASTEiJ_T0068479.1 MGP_CASTEiJ_G0028028.1 mouse_genomes_project 4 132223333 132233023 + MGP_CASTEiJ_P0068479 Gpatch3 protein_coding protein_coding MGP_CASTEiJ_T0068480.1 MGP_CASTEiJ_G0028028.1 mouse_genomes_project 4 132228190 132231503 + Gpatch3 protein_coding processed_transcript MGP_CASTEiJ_T0066403.1 MGP_CASTEiJ_G0027602.1 mouse_genomes_project 4 94756247 94756573 - MGP_CASTEiJ_P0066403 Gm10192 protein_coding protein_coding MGP_CASTEiJ_T0014259.1 MGP_CASTEiJ_G0012422.1 mouse_genomes_project 4 117378187 117378601 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064806.1 MGP_CASTEiJ_G0027246.1 mouse_genomes_project 4 18576928 18596838 + Usp45 protein_coding processed_transcript MGP_CASTEiJ_T0064807.1 MGP_CASTEiJ_G0027246.1 mouse_genomes_project 4 18587530 18603920 + Usp45 protein_coding retained_intron MGP_CASTEiJ_T0064808.1 MGP_CASTEiJ_G0027246.1 mouse_genomes_project 4 18587541 18660351 + MGP_CASTEiJ_P0064808 Usp45 protein_coding protein_coding MGP_CASTEiJ_T0064809.1 MGP_CASTEiJ_G0027246.1 mouse_genomes_project 4 18587541 18660353 + MGP_CASTEiJ_P0064809 Usp45 protein_coding protein_coding MGP_CASTEiJ_T0064810.1 MGP_CASTEiJ_G0027246.1 mouse_genomes_project 4 18587550 18618354 + MGP_CASTEiJ_P0064810 Usp45 protein_coding protein_coding MGP_CASTEiJ_T0064811.1 MGP_CASTEiJ_G0027246.1 mouse_genomes_project 4 18587567 18660353 + MGP_CASTEiJ_P0064811 Usp45 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064812.1 MGP_CASTEiJ_G0027246.1 mouse_genomes_project 4 18596097 18660351 + MGP_CASTEiJ_P0064812 Usp45 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064813.1 MGP_CASTEiJ_G0027246.1 mouse_genomes_project 4 18603803 18637756 + MGP_CASTEiJ_P0064813 Usp45 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0099792.1 MGP_CASTEiJ_G0036705.1 mouse_genomes_project 4 59093983 59094090 + Gm23148 snRNA snRNA MGP_CASTEiJ_T0065571.1 MGP_CASTEiJ_G0027394.1 mouse_genomes_project 4 44218636 44221440 + MGP_CASTEiJ_P0065571 Foxe1 protein_coding protein_coding MGP_CASTEiJ_T0017367.1 MGP_CASTEiJ_G0014901.1 mouse_genomes_project 4 154689676 154690585 - Gm20421 processed_transcript processed_transcript MGP_CASTEiJ_T0065131.1 MGP_CASTEiJ_G0027318.1 mouse_genomes_project 4 39170023 39225501 - MGP_CASTEiJ_P0065131 Fam219a protein_coding protein_coding MGP_CASTEiJ_T0065132.1 MGP_CASTEiJ_G0027318.1 mouse_genomes_project 4 39170023 39225529 - MGP_CASTEiJ_P0065132 Fam219a protein_coding protein_coding MGP_CASTEiJ_T0065133.1 MGP_CASTEiJ_G0027318.1 mouse_genomes_project 4 39170023 39225529 - MGP_CASTEiJ_P0065133 Fam219a protein_coding protein_coding MGP_CASTEiJ_T0065134.1 MGP_CASTEiJ_G0027318.1 mouse_genomes_project 4 39173872 39178323 - Fam219a protein_coding processed_transcript MGP_CASTEiJ_T0065135.1 MGP_CASTEiJ_G0027318.1 mouse_genomes_project 4 39177668 39225530 - Fam219a protein_coding processed_transcript MGP_CASTEiJ_T0065586.1 MGP_CASTEiJ_G0027399.1 mouse_genomes_project 4 44385367 44429141 - MGP_CASTEiJ_P0065586 Trim14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065587.1 MGP_CASTEiJ_G0027399.1 mouse_genomes_project 4 44386405 44427432 - Trim14 protein_coding processed_transcript MGP_CASTEiJ_T0065588.1 MGP_CASTEiJ_G0027399.1 mouse_genomes_project 4 44400723 44429160 - MGP_CASTEiJ_P0065588 Trim14 protein_coding protein_coding MGP_CASTEiJ_T0065589.1 MGP_CASTEiJ_G0027399.1 mouse_genomes_project 4 44401264 44427460 - Trim14 protein_coding processed_transcript MGP_CASTEiJ_T0065590.1 MGP_CASTEiJ_G0027399.1 mouse_genomes_project 4 44404263 44429133 - MGP_CASTEiJ_P0065590 Trim14 protein_coding protein_coding MGP_CASTEiJ_T0065591.1 MGP_CASTEiJ_G0027399.1 mouse_genomes_project 4 44412586 44427622 - Trim14 protein_coding processed_transcript MGP_CASTEiJ_T0101086.1 MGP_CASTEiJ_G0037999.1 mouse_genomes_project 4 129145872 129145955 + Gm23711 snoRNA snoRNA MGP_CASTEiJ_T0069037.1 MGP_CASTEiJ_G0028149.1 mouse_genomes_project 4 138812058 138877668 + MGP_CASTEiJ_P0069037 Gm21969 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0014140.1 MGP_CASTEiJ_G0012303.1 mouse_genomes_project 4 73540907 73541846 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067692.1 MGP_CASTEiJ_G0027869.1 mouse_genomes_project 4 121258079 121259644 - MGP_CASTEiJ_P0067692 protein_coding protein_coding MGP_CASTEiJ_T0014029.1 MGP_CASTEiJ_G0012192.1 mouse_genomes_project 4 30729020 30729419 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069738.1 MGP_CASTEiJ_G0028299.1 mouse_genomes_project 4 152996195 153114669 - MGP_CASTEiJ_P0069738 Ajap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069739.1 MGP_CASTEiJ_G0028299.1 mouse_genomes_project 4 153000907 153115252 - MGP_CASTEiJ_P0069739 Ajap1 protein_coding protein_coding MGP_CASTEiJ_T0069740.1 MGP_CASTEiJ_G0028299.1 mouse_genomes_project 4 153001914 153114620 - MGP_CASTEiJ_P0069740 Ajap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066921.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107098710 107159420 - MGP_CASTEiJ_P0066921 Osbpl9 protein_coding protein_coding MGP_CASTEiJ_T0066922.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107099185 107250348 - MGP_CASTEiJ_P0066922 Osbpl9 protein_coding protein_coding MGP_CASTEiJ_T0066923.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107099220 107159434 - MGP_CASTEiJ_P0066923 Osbpl9 protein_coding protein_coding MGP_CASTEiJ_T0066924.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107099225 107250386 - MGP_CASTEiJ_P0066924 Osbpl9 protein_coding protein_coding MGP_CASTEiJ_T0066925.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107099225 107250331 - MGP_CASTEiJ_P0066925 Osbpl9 protein_coding protein_coding MGP_CASTEiJ_T0066926.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107099225 107250348 - MGP_CASTEiJ_P0066926 Osbpl9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066927.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107099544 107127159 - Osbpl9 protein_coding processed_transcript MGP_CASTEiJ_T0066928.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107099649 107250386 - MGP_CASTEiJ_P0066928 Osbpl9 protein_coding protein_coding MGP_CASTEiJ_T0066929.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107099657 107200959 - MGP_CASTEiJ_P0066929 Osbpl9 protein_coding protein_coding MGP_CASTEiJ_T0066930.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107103066 107104618 - Osbpl9 protein_coding processed_transcript MGP_CASTEiJ_T0066931.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107106632 107110659 - Osbpl9 protein_coding processed_transcript MGP_CASTEiJ_T0066932.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107106986 107159094 - Osbpl9 protein_coding processed_transcript MGP_CASTEiJ_T0066933.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107122793 107151202 - Osbpl9 protein_coding processed_transcript MGP_CASTEiJ_T0066934.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107122917 107201145 - Osbpl9 protein_coding retained_intron MGP_CASTEiJ_T0066935.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107126099 107128489 - Osbpl9 protein_coding retained_intron MGP_CASTEiJ_T0066936.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107127119 107149469 - Osbpl9 protein_coding processed_transcript MGP_CASTEiJ_T0066937.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107127156 107201477 - Osbpl9 protein_coding processed_transcript MGP_CASTEiJ_T0066938.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107176632 107250350 - Osbpl9 protein_coding processed_transcript MGP_CASTEiJ_T0066939.1 MGP_CASTEiJ_G0027699.1 mouse_genomes_project 4 107217812 107250348 - Osbpl9 protein_coding retained_intron MGP_CASTEiJ_T0068241.1 MGP_CASTEiJ_G0027981.1 mouse_genomes_project 4 128931335 128976304 + MGP_CASTEiJ_P0068241 Nkain1 protein_coding protein_coding MGP_CASTEiJ_T0068242.1 MGP_CASTEiJ_G0027981.1 mouse_genomes_project 4 128931542 128976320 + MGP_CASTEiJ_P0068242 Nkain1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068243.1 MGP_CASTEiJ_G0027981.1 mouse_genomes_project 4 128949899 128968741 + Nkain1 protein_coding processed_transcript MGP_CASTEiJ_T0001358.1 MGP_CASTEiJ_G0001288.1 mouse_genomes_project 4 42437005 42438582 + TEC TEC MGP_CASTEiJ_T0068532.1 MGP_CASTEiJ_G0028038.1 mouse_genomes_project 4 132741291 132746444 + MGP_CASTEiJ_P0068532 Zfp683 protein_coding protein_coding MGP_CASTEiJ_T0066161.1 MGP_CASTEiJ_G0027541.1 mouse_genomes_project 4 80756064 80787371 - MGP_CASTEiJ_P0066161 Psip1 protein_coding protein_coding MGP_CASTEiJ_T0066162.1 MGP_CASTEiJ_G0027541.1 mouse_genomes_project 4 80756181 80761337 - MGP_CASTEiJ_P0066162 Psip1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066163.1 MGP_CASTEiJ_G0027541.1 mouse_genomes_project 4 80758189 80760347 - Psip1 protein_coding retained_intron MGP_CASTEiJ_T0066164.1 MGP_CASTEiJ_G0027541.1 mouse_genomes_project 4 80761925 80764971 - MGP_CASTEiJ_P0066164 Psip1 protein_coding protein_coding MGP_CASTEiJ_T0066165.1 MGP_CASTEiJ_G0027541.1 mouse_genomes_project 4 80761925 80787405 - MGP_CASTEiJ_P0066165 Psip1 protein_coding protein_coding MGP_CASTEiJ_T0066166.1 MGP_CASTEiJ_G0027541.1 mouse_genomes_project 4 80761925 80787410 - MGP_CASTEiJ_P0066166 Psip1 protein_coding protein_coding MGP_CASTEiJ_T0066167.1 MGP_CASTEiJ_G0027541.1 mouse_genomes_project 4 80762869 80765050 - Psip1 protein_coding retained_intron MGP_CASTEiJ_T0066169.1 MGP_CASTEiJ_G0027541.1 mouse_genomes_project 4 80776291 80787130 - MGP_CASTEiJ_P0066169 Psip1 protein_coding protein_coding MGP_CASTEiJ_T0014318.1 MGP_CASTEiJ_G0012481.1 mouse_genomes_project 4 138525976 138526734 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001355.1 MGP_CASTEiJ_G0001285.1 mouse_genomes_project 4 13116026 13116632 + TEC TEC MGP_CASTEiJ_T0066066.1 MGP_CASTEiJ_G0027525.1 mouse_genomes_project 4 71113130 71326170 + MGP_CASTEiJ_P0066066 Frmd3 protein_coding protein_coding MGP_CASTEiJ_T0066067.1 MGP_CASTEiJ_G0027525.1 mouse_genomes_project 4 71113132 71312024 + MGP_CASTEiJ_P0066067 Frmd3 protein_coding protein_coding MGP_CASTEiJ_T0066068.1 MGP_CASTEiJ_G0027525.1 mouse_genomes_project 4 71290148 71311096 + Frmd3 protein_coding processed_transcript MGP_CASTEiJ_T0014117.1 MGP_CASTEiJ_G0012280.1 mouse_genomes_project 4 65292314 65294356 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017355.1 MGP_CASTEiJ_G0014894.1 mouse_genomes_project 4 130361297 130382938 - Gm12992 processed_transcript processed_transcript MGP_CASTEiJ_T0017356.1 MGP_CASTEiJ_G0014894.1 mouse_genomes_project 4 130375320 130378371 - Gm12992 processed_transcript processed_transcript MGP_CASTEiJ_T0064964.1 MGP_CASTEiJ_G0027278.1 mouse_genomes_project 4 31345872 31365270 - MGP_CASTEiJ_P0064964 Spaca1 protein_coding protein_coding MGP_CASTEiJ_T0064965.1 MGP_CASTEiJ_G0027278.1 mouse_genomes_project 4 31345874 31356321 - MGP_CASTEiJ_P0064965 Spaca1 protein_coding protein_coding MGP_CASTEiJ_T0064966.1 MGP_CASTEiJ_G0027278.1 mouse_genomes_project 4 31349312 31365422 - MGP_CASTEiJ_P0064966 Spaca1 protein_coding protein_coding MGP_CASTEiJ_T0068437.1 MGP_CASTEiJ_G0028018.1 mouse_genomes_project 4 131853554 131865621 + MGP_CASTEiJ_P0068437 Map3k6 protein_coding protein_coding MGP_CASTEiJ_T0068438.1 MGP_CASTEiJ_G0028018.1 mouse_genomes_project 4 131854144 131865626 + MGP_CASTEiJ_P0068438 Map3k6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068439.1 MGP_CASTEiJ_G0028018.1 mouse_genomes_project 4 131859897 131860761 + Map3k6 protein_coding processed_transcript MGP_CASTEiJ_T0068440.1 MGP_CASTEiJ_G0028018.1 mouse_genomes_project 4 131859973 131860789 + Map3k6 protein_coding processed_transcript MGP_CASTEiJ_T0068441.1 MGP_CASTEiJ_G0028018.1 mouse_genomes_project 4 131863539 131865620 + Map3k6 protein_coding processed_transcript MGP_CASTEiJ_T0066124.1 MGP_CASTEiJ_G0027535.1 mouse_genomes_project 4 79485157 79778101 - MGP_CASTEiJ_P0066124 Nfib protein_coding protein_coding MGP_CASTEiJ_T0066125.1 MGP_CASTEiJ_G0027535.1 mouse_genomes_project 4 79564362 79777997 - MGP_CASTEiJ_P0066125 Nfib protein_coding protein_coding MGP_CASTEiJ_T0066126.1 MGP_CASTEiJ_G0027535.1 mouse_genomes_project 4 79595274 79778547 - Nfib protein_coding retained_intron MGP_CASTEiJ_T0066127.1 MGP_CASTEiJ_G0027535.1 mouse_genomes_project 4 79597054 79778547 - Nfib protein_coding retained_intron MGP_CASTEiJ_T0066128.1 MGP_CASTEiJ_G0027535.1 mouse_genomes_project 4 79621311 79779001 - Nfib protein_coding retained_intron MGP_CASTEiJ_T0066129.1 MGP_CASTEiJ_G0027535.1 mouse_genomes_project 4 79769222 79779016 - Nfib protein_coding retained_intron MGP_CASTEiJ_T0066130.1 MGP_CASTEiJ_G0027535.1 mouse_genomes_project 4 79771564 79986530 - MGP_CASTEiJ_P0066130 Nfib protein_coding protein_coding MGP_CASTEiJ_T0066131.1 MGP_CASTEiJ_G0027535.1 mouse_genomes_project 4 79771787 79772553 - Nfib protein_coding processed_transcript MGP_CASTEiJ_T0014308.1 MGP_CASTEiJ_G0012471.1 mouse_genomes_project 4 134590223 134590701 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007798.1 MGP_CASTEiJ_G0006381.1 mouse_genomes_project 4 132484028 132485224 + Gm12974 lincRNA lincRNA MGP_CASTEiJ_T0065740.1 MGP_CASTEiJ_G0027443.1 mouse_genomes_project 4 53176253 53245925 + MGP_CASTEiJ_P0065740 Zfp462 protein_coding protein_coding MGP_CASTEiJ_T0065741.1 MGP_CASTEiJ_G0027443.1 mouse_genomes_project 4 53179148 53322355 + MGP_CASTEiJ_P0065741 Zfp462 protein_coding protein_coding MGP_CASTEiJ_T0065742.1 MGP_CASTEiJ_G0027443.1 mouse_genomes_project 4 53245033 53319869 + MGP_CASTEiJ_P0065742 Zfp462 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065743.1 MGP_CASTEiJ_G0027443.1 mouse_genomes_project 4 53245033 53319869 + MGP_CASTEiJ_P0065743 Zfp462 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065744.1 MGP_CASTEiJ_G0027443.1 mouse_genomes_project 4 53245039 53322157 + MGP_CASTEiJ_P0065744 Zfp462 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065745.1 MGP_CASTEiJ_G0027443.1 mouse_genomes_project 4 53248976 53320150 + MGP_CASTEiJ_P0065745 Zfp462 protein_coding protein_coding MGP_CASTEiJ_T0065746.1 MGP_CASTEiJ_G0027443.1 mouse_genomes_project 4 53249090 53320122 + MGP_CASTEiJ_P0065746 Zfp462 protein_coding protein_coding MGP_CASTEiJ_T0069043.1 MGP_CASTEiJ_G0028152.1 mouse_genomes_project 4 138937619 139078749 - MGP_CASTEiJ_P0069043 Pax7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069044.1 MGP_CASTEiJ_G0028152.1 mouse_genomes_project 4 138968777 139079585 - MGP_CASTEiJ_P0069044 Pax7 protein_coding protein_coding MGP_CASTEiJ_T0069045.1 MGP_CASTEiJ_G0028152.1 mouse_genomes_project 4 138972418 139079129 - MGP_CASTEiJ_P0069045 Pax7 protein_coding protein_coding MGP_CASTEiJ_T0007626.1 MGP_CASTEiJ_G0006248.1 mouse_genomes_project 4 20105618 20236149 + Gm11884 lincRNA lincRNA MGP_CASTEiJ_T0007808.1 MGP_CASTEiJ_G0006388.1 mouse_genomes_project 4 136361856 136362946 - 2810405F17Rik lincRNA lincRNA MGP_CASTEiJ_T0014161.1 MGP_CASTEiJ_G0012324.1 mouse_genomes_project 4 82547659 82548062 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014277.1 MGP_CASTEiJ_G0012440.1 mouse_genomes_project 4 121825041 121826435 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067461.1 MGP_CASTEiJ_G0027808.1 mouse_genomes_project 4 116500720 116501668 + MGP_CASTEiJ_P0067461 Olfr1340 protein_coding protein_coding MGP_CASTEiJ_T0004433.1 MGP_CASTEiJ_G0003857.1 mouse_genomes_project 4 137475798 137479280 + AB041806 antisense antisense MGP_CASTEiJ_T0098595.1 MGP_CASTEiJ_G0035526.1 mouse_genomes_project 4 9476487 9476594 + n-R5s182 rRNA rRNA MGP_CASTEiJ_T0067406.1 MGP_CASTEiJ_G0027794.1 mouse_genomes_project 4 115959057 116042904 - MGP_CASTEiJ_P0067406 Ptprf protein_coding protein_coding MGP_CASTEiJ_T0067407.1 MGP_CASTEiJ_G0027794.1 mouse_genomes_project 4 115959834 115968520 - Ptprf protein_coding processed_transcript MGP_CASTEiJ_T0067408.1 MGP_CASTEiJ_G0027794.1 mouse_genomes_project 4 115959850 115987338 - MGP_CASTEiJ_P0067408 Ptprf protein_coding protein_coding MGP_CASTEiJ_T0067409.1 MGP_CASTEiJ_G0027794.1 mouse_genomes_project 4 115959855 115986909 - MGP_CASTEiJ_P0067409 Ptprf protein_coding protein_coding MGP_CASTEiJ_T0067410.1 MGP_CASTEiJ_G0027794.1 mouse_genomes_project 4 115960705 115961589 - Ptprf protein_coding processed_transcript MGP_CASTEiJ_T0067411.1 MGP_CASTEiJ_G0027794.1 mouse_genomes_project 4 115976980 115982086 - Ptprf protein_coding processed_transcript MGP_CASTEiJ_T0066638.1 MGP_CASTEiJ_G0027648.1 mouse_genomes_project 4 103615835 103620377 + MGP_CASTEiJ_P0066638 Gm12728 protein_coding protein_coding MGP_CASTEiJ_T0066639.1 MGP_CASTEiJ_G0027648.1 mouse_genomes_project 4 103616502 103620377 + MGP_CASTEiJ_P0066639 Gm12728 protein_coding protein_coding MGP_CASTEiJ_T0065650.1 MGP_CASTEiJ_G0027414.1 mouse_genomes_project 4 46542988 46566485 + MGP_CASTEiJ_P0065650 Msantd3 protein_coding protein_coding MGP_CASTEiJ_T0065651.1 MGP_CASTEiJ_G0027414.1 mouse_genomes_project 4 46543132 46566143 + MGP_CASTEiJ_P0065651 Msantd3 protein_coding protein_coding MGP_CASTEiJ_T0065652.1 MGP_CASTEiJ_G0027414.1 mouse_genomes_project 4 46564517 46566485 + Msantd3 protein_coding processed_transcript MGP_CASTEiJ_T0007706.1 MGP_CASTEiJ_G0006318.1 mouse_genomes_project 4 93004698 93005511 - Gm29064 lincRNA lincRNA MGP_CASTEiJ_T0067446.1 MGP_CASTEiJ_G0027802.1 mouse_genomes_project 4 116309475 116312263 - MGP_CASTEiJ_P0067446 Tmem125 protein_coding protein_coding MGP_CASTEiJ_T0067447.1 MGP_CASTEiJ_G0027802.1 mouse_genomes_project 4 116310393 116312580 - MGP_CASTEiJ_P0067447 Tmem125 protein_coding protein_coding MGP_CASTEiJ_T0067448.1 MGP_CASTEiJ_G0027802.1 mouse_genomes_project 4 116310551 116311497 - MGP_CASTEiJ_P0067448 Tmem125 protein_coding protein_coding MGP_CASTEiJ_T0067449.1 MGP_CASTEiJ_G0027802.1 mouse_genomes_project 4 116310601 116311824 - MGP_CASTEiJ_P0067449 Tmem125 protein_coding protein_coding MGP_CASTEiJ_T0067450.1 MGP_CASTEiJ_G0027802.1 mouse_genomes_project 4 116311136 116311784 - Tmem125 protein_coding processed_transcript MGP_CASTEiJ_T0065419.1 MGP_CASTEiJ_G0027370.1 mouse_genomes_project 4 41764594 41820648 - MGP_CASTEiJ_P0065419 Gne protein_coding protein_coding MGP_CASTEiJ_T0065420.1 MGP_CASTEiJ_G0027370.1 mouse_genomes_project 4 41767388 41788609 - MGP_CASTEiJ_P0065420 Gne protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065421.1 MGP_CASTEiJ_G0027370.1 mouse_genomes_project 4 41767403 41806355 - MGP_CASTEiJ_P0065421 Gne protein_coding unknown_likely_coding MGP_CASTEiJ_T0065422.1 MGP_CASTEiJ_G0027370.1 mouse_genomes_project 4 41767404 41806490 - MGP_CASTEiJ_P0065422 Gne protein_coding protein_coding MGP_CASTEiJ_T0065423.1 MGP_CASTEiJ_G0027370.1 mouse_genomes_project 4 41767408 41800673 - MGP_CASTEiJ_P0065423 Gne protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065424.1 MGP_CASTEiJ_G0027370.1 mouse_genomes_project 4 41767536 41800713 - MGP_CASTEiJ_P0065424 Gne protein_coding protein_coding MGP_CASTEiJ_T0065425.1 MGP_CASTEiJ_G0027370.1 mouse_genomes_project 4 41779321 41806336 - MGP_CASTEiJ_P0065425 Gne protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065426.1 MGP_CASTEiJ_G0027370.1 mouse_genomes_project 4 41786192 41800814 - MGP_CASTEiJ_P0065426 Gne protein_coding protein_coding MGP_CASTEiJ_T0065427.1 MGP_CASTEiJ_G0027370.1 mouse_genomes_project 4 41788616 41798134 - Gne protein_coding retained_intron MGP_CASTEiJ_T0065428.1 MGP_CASTEiJ_G0027370.1 mouse_genomes_project 4 41792905 41820638 - Gne protein_coding retained_intron MGP_CASTEiJ_T0065429.1 MGP_CASTEiJ_G0027370.1 mouse_genomes_project 4 41793073 41820394 - MGP_CASTEiJ_P0065429 Gne protein_coding protein_coding MGP_CASTEiJ_T0065430.1 MGP_CASTEiJ_G0027370.1 mouse_genomes_project 4 41793177 41806448 - Gne protein_coding processed_transcript MGP_CASTEiJ_T0065431.1 MGP_CASTEiJ_G0027370.1 mouse_genomes_project 4 41793196 41806314 - MGP_CASTEiJ_P0065431 Gne protein_coding protein_coding MGP_CASTEiJ_T0065432.1 MGP_CASTEiJ_G0027370.1 mouse_genomes_project 4 41793308 41806729 - MGP_CASTEiJ_P0065432 Gne protein_coding protein_coding MGP_CASTEiJ_T0065433.1 MGP_CASTEiJ_G0027370.1 mouse_genomes_project 4 41793317 41806730 - MGP_CASTEiJ_P0065433 Gne protein_coding protein_coding MGP_CASTEiJ_T0102303.1 MGP_CASTEiJ_G0039028.1 mouse_genomes_project 4 41472882 41473184 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0067391.1 MGP_CASTEiJ_G0027791.1 mouse_genomes_project 4 115652768 115656383 - MGP_CASTEiJ_P0067391 Artn protein_coding protein_coding MGP_CASTEiJ_T0067392.1 MGP_CASTEiJ_G0027791.1 mouse_genomes_project 4 115652769 115656117 - MGP_CASTEiJ_P0067392 Artn protein_coding protein_coding MGP_CASTEiJ_T0067393.1 MGP_CASTEiJ_G0027791.1 mouse_genomes_project 4 115654653 115656097 - Artn protein_coding processed_transcript MGP_CASTEiJ_T0067394.1 MGP_CASTEiJ_G0027791.1 mouse_genomes_project 4 115654755 115656033 - Artn protein_coding processed_transcript MGP_CASTEiJ_T0004305.1 MGP_CASTEiJ_G0003759.1 mouse_genomes_project 4 25806098 25806880 - Gm11915 antisense antisense MGP_CASTEiJ_T0069159.1 MGP_CASTEiJ_G0028179.1 mouse_genomes_project 4 140873022 140949541 - MGP_CASTEiJ_P0069159 Spen protein_coding protein_coding MGP_CASTEiJ_T0069160.1 MGP_CASTEiJ_G0028179.1 mouse_genomes_project 4 140873022 140949689 - MGP_CASTEiJ_P0069160 Spen protein_coding protein_coding MGP_CASTEiJ_T0069161.1 MGP_CASTEiJ_G0028179.1 mouse_genomes_project 4 140873584 140876609 - Spen protein_coding processed_transcript MGP_CASTEiJ_T0069162.1 MGP_CASTEiJ_G0028179.1 mouse_genomes_project 4 140873948 140949375 - MGP_CASTEiJ_P0069162 Spen protein_coding unknown_likely_coding MGP_CASTEiJ_T0069163.1 MGP_CASTEiJ_G0028179.1 mouse_genomes_project 4 140873948 140949375 - MGP_CASTEiJ_P0069163 Spen protein_coding unknown_likely_coding MGP_CASTEiJ_T0069164.1 MGP_CASTEiJ_G0028179.1 mouse_genomes_project 4 140873948 140949375 - MGP_CASTEiJ_P0069164 Spen protein_coding unknown_likely_coding MGP_CASTEiJ_T0069165.1 MGP_CASTEiJ_G0028179.1 mouse_genomes_project 4 140873948 140949375 - MGP_CASTEiJ_P0069165 Spen protein_coding unknown_likely_coding MGP_CASTEiJ_T0069166.1 MGP_CASTEiJ_G0028179.1 mouse_genomes_project 4 140891587 140895319 - Spen protein_coding processed_transcript MGP_CASTEiJ_T0069167.1 MGP_CASTEiJ_G0028179.1 mouse_genomes_project 4 140902316 140926804 - Spen protein_coding processed_transcript MGP_CASTEiJ_T0069168.1 MGP_CASTEiJ_G0028179.1 mouse_genomes_project 4 140931411 140949345 - Spen protein_coding processed_transcript MGP_CASTEiJ_T0099847.1 MGP_CASTEiJ_G0036760.1 mouse_genomes_project 4 147616111 147616263 - Gm23303 snRNA snRNA MGP_CASTEiJ_T0011231.1 MGP_CASTEiJ_G0009419.1 mouse_genomes_project 4 41628430 41628507 + Gm27265 misc_RNA misc_RNA MGP_CASTEiJ_T0004391.1 MGP_CASTEiJ_G0003824.1 mouse_genomes_project 4 116973249 116973959 - Gm12867 antisense antisense MGP_CASTEiJ_T0066287.1 MGP_CASTEiJ_G0027564.1 mouse_genomes_project 4 86129822 86131059 - MGP_CASTEiJ_P0066287 Ifna16 protein_coding protein_coding MGP_CASTEiJ_T0067168.1 MGP_CASTEiJ_G0027753.1 mouse_genomes_project 4 113840617 113884668 + MGP_CASTEiJ_P0067168 Pik3r3 protein_coding protein_coding MGP_CASTEiJ_T0067169.1 MGP_CASTEiJ_G0027753.1 mouse_genomes_project 4 113840660 113925035 + MGP_CASTEiJ_P0067169 Pik3r3 protein_coding protein_coding MGP_CASTEiJ_T0067170.1 MGP_CASTEiJ_G0027753.1 mouse_genomes_project 4 113840695 113921809 + MGP_CASTEiJ_P0067170 Pik3r3 protein_coding protein_coding MGP_CASTEiJ_T0069151.1 MGP_CASTEiJ_G0028177.1 mouse_genomes_project 4 140837571 140841258 - MGP_CASTEiJ_P0069151 Gm694 protein_coding protein_coding MGP_CASTEiJ_T0004405.1 MGP_CASTEiJ_G0003835.1 mouse_genomes_project 4 123176910 123178833 - Gm12932 antisense antisense MGP_CASTEiJ_T0099798.1 MGP_CASTEiJ_G0036711.1 mouse_genomes_project 4 80837093 80837234 - Gm25899 snRNA snRNA MGP_CASTEiJ_T0014321.1 MGP_CASTEiJ_G0012484.1 mouse_genomes_project 4 141414299 141414864 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007657.1 MGP_CASTEiJ_G0006275.1 mouse_genomes_project 4 52375202 52375692 - lincRNA lincRNA MGP_CASTEiJ_T0099842.1 MGP_CASTEiJ_G0036755.1 mouse_genomes_project 4 136294782 136294870 + Gm25772 snRNA snRNA MGP_CASTEiJ_T0013981.1 MGP_CASTEiJ_G0012144.1 mouse_genomes_project 4 17235150 17236454 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014289.1 MGP_CASTEiJ_G0012452.1 mouse_genomes_project 4 125389337 125389547 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064942.1 MGP_CASTEiJ_G0027271.1 mouse_genomes_project 4 30299643 30340586 + MGP_CASTEiJ_P0064942 Gabrr2 protein_coding protein_coding MGP_CASTEiJ_T0064943.1 MGP_CASTEiJ_G0027271.1 mouse_genomes_project 4 30299756 30340586 + MGP_CASTEiJ_P0064943 Gabrr2 protein_coding protein_coding MGP_CASTEiJ_T0064944.1 MGP_CASTEiJ_G0027271.1 mouse_genomes_project 4 30318541 30326163 + MGP_CASTEiJ_P0064944 Gabrr2 protein_coding protein_coding MGP_CASTEiJ_T0064945.1 MGP_CASTEiJ_G0027271.1 mouse_genomes_project 4 30321271 30326419 + MGP_CASTEiJ_P0064945 Gabrr2 protein_coding protein_coding MGP_CASTEiJ_T0014309.1 MGP_CASTEiJ_G0012472.1 mouse_genomes_project 4 134699709 134700209 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014168.1 MGP_CASTEiJ_G0012331.1 mouse_genomes_project 4 86687695 86688188 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013978.1 MGP_CASTEiJ_G0012141.1 mouse_genomes_project 4 15630896 15632315 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007678.1 MGP_CASTEiJ_G0006293.1 mouse_genomes_project 4 61206688 61231271 - Gm11217 lincRNA lincRNA MGP_CASTEiJ_T0014270.1 MGP_CASTEiJ_G0012433.1 mouse_genomes_project 4 119269187 119269512 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102330.1 MGP_CASTEiJ_G0039055.1 mouse_genomes_project 4 120223020 120458636 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011238.1 MGP_CASTEiJ_G0009426.1 mouse_genomes_project 4 52932158 52932447 + Gm24628 misc_RNA misc_RNA MGP_CASTEiJ_T0064693.1 MGP_CASTEiJ_G0027211.1 mouse_genomes_project 4 8604499 8612771 - MGP_CASTEiJ_P0064693 Pdp1 protein_coding protein_coding MGP_CASTEiJ_T0064694.1 MGP_CASTEiJ_G0027211.1 mouse_genomes_project 4 8606125 8612304 - MGP_CASTEiJ_P0064694 Pdp1 protein_coding protein_coding MGP_CASTEiJ_T0064695.1 MGP_CASTEiJ_G0027211.1 mouse_genomes_project 4 8606125 8612144 - MGP_CASTEiJ_P0064695 Pdp1 protein_coding protein_coding MGP_CASTEiJ_T0064696.1 MGP_CASTEiJ_G0027211.1 mouse_genomes_project 4 8606125 8612250 - MGP_CASTEiJ_P0064696 Pdp1 protein_coding protein_coding MGP_CASTEiJ_T0064697.1 MGP_CASTEiJ_G0027211.1 mouse_genomes_project 4 8606125 8612746 - MGP_CASTEiJ_P0064697 Pdp1 protein_coding protein_coding MGP_CASTEiJ_T0064698.1 MGP_CASTEiJ_G0027211.1 mouse_genomes_project 4 8606129 8612739 - MGP_CASTEiJ_P0064698 Pdp1 protein_coding protein_coding MGP_CASTEiJ_T0014027.1 MGP_CASTEiJ_G0012190.1 mouse_genomes_project 4 30289409 30289863 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013982.1 MGP_CASTEiJ_G0012145.1 mouse_genomes_project 4 17877179 17878224 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004321.1 MGP_CASTEiJ_G0003772.1 mouse_genomes_project 4 42775032 42778361 + Gm12493 antisense antisense MGP_CASTEiJ_T0065708.1 MGP_CASTEiJ_G0027435.1 mouse_genomes_project 4 51172260 51188505 + MGP_CASTEiJ_P0065708 Nipsnap3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065709.1 MGP_CASTEiJ_G0027435.1 mouse_genomes_project 4 51172272 51188512 + MGP_CASTEiJ_P0065709 Nipsnap3a protein_coding protein_coding MGP_CASTEiJ_T0065710.1 MGP_CASTEiJ_G0027435.1 mouse_genomes_project 4 51172406 51188821 + MGP_CASTEiJ_P0065710 Nipsnap3a protein_coding protein_coding MGP_CASTEiJ_T0065711.1 MGP_CASTEiJ_G0027435.1 mouse_genomes_project 4 51187906 51188504 + Nipsnap3a protein_coding retained_intron MGP_CASTEiJ_T0069197.1 MGP_CASTEiJ_G0028186.1 mouse_genomes_project 4 141181534 141193820 + MGP_CASTEiJ_P0069197 Agmat protein_coding protein_coding MGP_CASTEiJ_T0013971.1 MGP_CASTEiJ_G0012134.1 mouse_genomes_project 4 12989979 12990838 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067463.1 MGP_CASTEiJ_G0027810.1 mouse_genomes_project 4 116637839 116641156 - MGP_CASTEiJ_P0067463 protein_coding protein_coding MGP_CASTEiJ_T0014186.1 MGP_CASTEiJ_G0012349.1 mouse_genomes_project 4 92641258 92645014 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066170.1 MGP_CASTEiJ_G0027542.1 mouse_genomes_project 4 80833737 81178249 + MGP_CASTEiJ_P0066170 Ccdc171 protein_coding protein_coding MGP_CASTEiJ_T0066171.1 MGP_CASTEiJ_G0027542.1 mouse_genomes_project 4 80833789 81014775 + MGP_CASTEiJ_P0066171 Ccdc171 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066172.1 MGP_CASTEiJ_G0027542.1 mouse_genomes_project 4 80833806 80864636 + MGP_CASTEiJ_P0066172 Ccdc171 protein_coding protein_coding MGP_CASTEiJ_T0066173.1 MGP_CASTEiJ_G0027542.1 mouse_genomes_project 4 80833831 81178164 + MGP_CASTEiJ_P0066173 Ccdc171 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066174.1 MGP_CASTEiJ_G0027542.1 mouse_genomes_project 4 80858653 80867917 + Ccdc171 protein_coding processed_transcript MGP_CASTEiJ_T0066175.1 MGP_CASTEiJ_G0027542.1 mouse_genomes_project 4 81007073 81110685 + Ccdc171 protein_coding processed_transcript MGP_CASTEiJ_T0004325.1 MGP_CASTEiJ_G0003775.1 mouse_genomes_project 4 43060363 43069721 - Frmpd1os antisense antisense MGP_CASTEiJ_T0066720.1 MGP_CASTEiJ_G0027663.1 mouse_genomes_project 4 105010640 105021325 + MGP_CASTEiJ_P0066720 Cdcp2 protein_coding protein_coding MGP_CASTEiJ_T0068068.1 MGP_CASTEiJ_G0027951.1 mouse_genomes_project 4 127845517 127860329 - MGP_CASTEiJ_P0068068 Zbtb8b protein_coding protein_coding MGP_CASTEiJ_T0068069.1 MGP_CASTEiJ_G0027951.1 mouse_genomes_project 4 127845517 127860294 - MGP_CASTEiJ_P0068069 Zbtb8b protein_coding protein_coding MGP_CASTEiJ_T0068070.1 MGP_CASTEiJ_G0027951.1 mouse_genomes_project 4 127846023 127852261 - Zbtb8b protein_coding processed_transcript MGP_CASTEiJ_T0068071.1 MGP_CASTEiJ_G0027951.1 mouse_genomes_project 4 127848893 127860296 - Zbtb8b protein_coding retained_intron MGP_CASTEiJ_T0007695.1 MGP_CASTEiJ_G0006309.1 mouse_genomes_project 4 86758698 86803504 - lincRNA lincRNA MGP_CASTEiJ_T0007696.1 MGP_CASTEiJ_G0006309.1 mouse_genomes_project 4 86758716 86804270 - lincRNA lincRNA MGP_CASTEiJ_T0013976.1 MGP_CASTEiJ_G0012139.1 mouse_genomes_project 4 15283915 15284360 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007726.1 MGP_CASTEiJ_G0006334.1 mouse_genomes_project 4 105627636 105706394 + 1700047F07Rik lincRNA lincRNA MGP_CASTEiJ_T0007727.1 MGP_CASTEiJ_G0006334.1 mouse_genomes_project 4 105627668 105647682 + 1700047F07Rik lincRNA lincRNA MGP_CASTEiJ_T0007728.1 MGP_CASTEiJ_G0006334.1 mouse_genomes_project 4 105646128 105659947 + 1700047F07Rik lincRNA lincRNA MGP_CASTEiJ_T0007729.1 MGP_CASTEiJ_G0006334.1 mouse_genomes_project 4 105646151 105647739 + 1700047F07Rik lincRNA lincRNA MGP_CASTEiJ_T0068359.1 MGP_CASTEiJ_G0028002.1 mouse_genomes_project 4 131068842 131071942 - MGP_CASTEiJ_P0068359 Atpif1 protein_coding protein_coding MGP_CASTEiJ_T0068360.1 MGP_CASTEiJ_G0028002.1 mouse_genomes_project 4 131070776 131071884 - Atpif1 protein_coding retained_intron MGP_CASTEiJ_T0065987.1 MGP_CASTEiJ_G0027503.1 mouse_genomes_project 4 60322235 60415313 - MGP_CASTEiJ_P0065987 Whrn protein_coding unknown_likely_coding MGP_CASTEiJ_T0065988.1 MGP_CASTEiJ_G0027503.1 mouse_genomes_project 4 60322235 60415312 - MGP_CASTEiJ_P0065988 Whrn protein_coding protein_coding MGP_CASTEiJ_T0065989.1 MGP_CASTEiJ_G0027503.1 mouse_genomes_project 4 60322235 60415312 - MGP_CASTEiJ_P0065989 Whrn protein_coding unknown_likely_coding MGP_CASTEiJ_T0065990.1 MGP_CASTEiJ_G0027503.1 mouse_genomes_project 4 60322240 60413652 - Whrn protein_coding processed_transcript MGP_CASTEiJ_T0065991.1 MGP_CASTEiJ_G0027503.1 mouse_genomes_project 4 60322240 60344080 - Whrn protein_coding retained_intron MGP_CASTEiJ_T0065992.1 MGP_CASTEiJ_G0027503.1 mouse_genomes_project 4 60322240 60344080 - Whrn protein_coding retained_intron MGP_CASTEiJ_T0065993.1 MGP_CASTEiJ_G0027503.1 mouse_genomes_project 4 60322240 60416002 - MGP_CASTEiJ_P0065993 Whrn protein_coding protein_coding MGP_CASTEiJ_T0065994.1 MGP_CASTEiJ_G0027503.1 mouse_genomes_project 4 60322240 60416002 - MGP_CASTEiJ_P0065994 Whrn protein_coding protein_coding MGP_CASTEiJ_T0065995.1 MGP_CASTEiJ_G0027503.1 mouse_genomes_project 4 60322240 60416002 - MGP_CASTEiJ_P0065995 Whrn protein_coding protein_coding MGP_CASTEiJ_T0065996.1 MGP_CASTEiJ_G0027503.1 mouse_genomes_project 4 60328598 60341125 - MGP_CASTEiJ_P0065996 Whrn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065997.1 MGP_CASTEiJ_G0027503.1 mouse_genomes_project 4 60334877 60341198 - Whrn protein_coding processed_transcript MGP_CASTEiJ_T0065998.1 MGP_CASTEiJ_G0027503.1 mouse_genomes_project 4 60340623 60416042 - MGP_CASTEiJ_P0065998 Whrn protein_coding protein_coding MGP_CASTEiJ_T0065999.1 MGP_CASTEiJ_G0027503.1 mouse_genomes_project 4 60345561 60378863 - Whrn protein_coding retained_intron MGP_CASTEiJ_T0066000.1 MGP_CASTEiJ_G0027503.1 mouse_genomes_project 4 60347020 60391645 - MGP_CASTEiJ_P0066000 Whrn protein_coding protein_coding MGP_CASTEiJ_T0066001.1 MGP_CASTEiJ_G0027503.1 mouse_genomes_project 4 60377718 60414810 - MGP_CASTEiJ_P0066001 Whrn protein_coding protein_coding MGP_CASTEiJ_T0066002.1 MGP_CASTEiJ_G0027503.1 mouse_genomes_project 4 60378379 60414728 - Whrn protein_coding retained_intron MGP_CASTEiJ_T0065751.1 MGP_CASTEiJ_G0027445.1 mouse_genomes_project 4 53797956 53803723 - MGP_CASTEiJ_P0065751 Klf4 protein_coding protein_coding MGP_CASTEiJ_T0065752.1 MGP_CASTEiJ_G0027445.1 mouse_genomes_project 4 53801831 53802999 - MGP_CASTEiJ_P0065752 Klf4 protein_coding protein_coding MGP_CASTEiJ_T0065753.1 MGP_CASTEiJ_G0027445.1 mouse_genomes_project 4 53801940 53803710 - MGP_CASTEiJ_P0065753 Klf4 protein_coding protein_coding MGP_CASTEiJ_T0007800.1 MGP_CASTEiJ_G0006383.1 mouse_genomes_project 4 134457304 134460841 + 1700029M20Rik lincRNA lincRNA MGP_CASTEiJ_T0007801.1 MGP_CASTEiJ_G0006383.1 mouse_genomes_project 4 134457423 134459133 + 1700029M20Rik lincRNA lincRNA MGP_CASTEiJ_T0007802.1 MGP_CASTEiJ_G0006383.1 mouse_genomes_project 4 134457467 134459133 + 1700029M20Rik lincRNA lincRNA MGP_CASTEiJ_T0007803.1 MGP_CASTEiJ_G0006383.1 mouse_genomes_project 4 134457902 134458635 + 1700029M20Rik lincRNA lincRNA MGP_CASTEiJ_T0069579.1 MGP_CASTEiJ_G0028276.1 mouse_genomes_project 4 150431191 150473397 - MGP_CASTEiJ_P0069579 Per3 protein_coding protein_coding MGP_CASTEiJ_T0069580.1 MGP_CASTEiJ_G0028276.1 mouse_genomes_project 4 150431325 150444981 - Per3 protein_coding processed_transcript MGP_CASTEiJ_T0069581.1 MGP_CASTEiJ_G0028276.1 mouse_genomes_project 4 150440166 150460325 - Per3 protein_coding retained_intron MGP_CASTEiJ_T0069582.1 MGP_CASTEiJ_G0028276.1 mouse_genomes_project 4 150440166 150473397 - MGP_CASTEiJ_P0069582 Per3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069583.1 MGP_CASTEiJ_G0028276.1 mouse_genomes_project 4 150441692 150472909 - MGP_CASTEiJ_P0069583 Per3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069584.1 MGP_CASTEiJ_G0028276.1 mouse_genomes_project 4 150453014 150473397 - Per3 protein_coding retained_intron MGP_CASTEiJ_T0001380.1 MGP_CASTEiJ_G0001309.1 mouse_genomes_project 4 155810239 155814378 - TEC TEC MGP_CASTEiJ_T0001373.1 MGP_CASTEiJ_G0001303.1 mouse_genomes_project 4 140616640 140617902 - TEC TEC MGP_CASTEiJ_T0001374.1 MGP_CASTEiJ_G0001303.1 mouse_genomes_project 4 140616646 140617902 - TEC TEC MGP_CASTEiJ_T0067728.1 MGP_CASTEiJ_G0027878.1 mouse_genomes_project 4 122716064 122719909 + MGP_CASTEiJ_P0067728 Pou3f1 protein_coding protein_coding MGP_CASTEiJ_T0014234.1 MGP_CASTEiJ_G0012397.1 mouse_genomes_project 4 109354831 109356443 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004362.1 MGP_CASTEiJ_G0003801.1 mouse_genomes_project 4 100730645 100752825 - Gm12709 antisense antisense MGP_CASTEiJ_T0069767.1 MGP_CASTEiJ_G0028304.1 mouse_genomes_project 4 153689628 153694562 - MGP_CASTEiJ_P0069767 Smim1 protein_coding protein_coding MGP_CASTEiJ_T0069768.1 MGP_CASTEiJ_G0028304.1 mouse_genomes_project 4 153689746 153694858 - MGP_CASTEiJ_P0069768 Smim1 protein_coding protein_coding MGP_CASTEiJ_T0069769.1 MGP_CASTEiJ_G0028304.1 mouse_genomes_project 4 153689746 153694912 - MGP_CASTEiJ_P0069769 Smim1 protein_coding protein_coding MGP_CASTEiJ_T0069770.1 MGP_CASTEiJ_G0028304.1 mouse_genomes_project 4 153690607 153695176 - MGP_CASTEiJ_P0069770 Smim1 protein_coding protein_coding MGP_CASTEiJ_T0069771.1 MGP_CASTEiJ_G0028304.1 mouse_genomes_project 4 153690612 153695098 - MGP_CASTEiJ_P0069771 Smim1 protein_coding protein_coding MGP_CASTEiJ_T0069772.1 MGP_CASTEiJ_G0028304.1 mouse_genomes_project 4 153692260 153694562 - MGP_CASTEiJ_P0069772 Smim1 protein_coding protein_coding MGP_CASTEiJ_T0069773.1 MGP_CASTEiJ_G0028304.1 mouse_genomes_project 4 153692260 153694882 - MGP_CASTEiJ_P0069773 Smim1 protein_coding protein_coding MGP_CASTEiJ_T0069774.1 MGP_CASTEiJ_G0028304.1 mouse_genomes_project 4 153692260 153694813 - MGP_CASTEiJ_P0069774 Smim1 protein_coding protein_coding MGP_CASTEiJ_T0069775.1 MGP_CASTEiJ_G0028304.1 mouse_genomes_project 4 153692261 153693303 - MGP_CASTEiJ_P0069775 Smim1 protein_coding protein_coding MGP_CASTEiJ_T0069776.1 MGP_CASTEiJ_G0028304.1 mouse_genomes_project 4 153692261 153695096 - MGP_CASTEiJ_P0069776 Smim1 protein_coding protein_coding MGP_CASTEiJ_T0069777.1 MGP_CASTEiJ_G0028304.1 mouse_genomes_project 4 153692528 153694983 - MGP_CASTEiJ_P0069777 Smim1 protein_coding protein_coding MGP_CASTEiJ_T0069778.1 MGP_CASTEiJ_G0028304.1 mouse_genomes_project 4 153692646 153694609 - MGP_CASTEiJ_P0069778 Smim1 protein_coding protein_coding MGP_CASTEiJ_T0069779.1 MGP_CASTEiJ_G0028304.1 mouse_genomes_project 4 153692671 153693271 - MGP_CASTEiJ_P0069779 Smim1 protein_coding protein_coding MGP_CASTEiJ_T0069780.1 MGP_CASTEiJ_G0028304.1 mouse_genomes_project 4 153694251 153694858 - Smim1 protein_coding processed_transcript MGP_CASTEiJ_T0099769.1 MGP_CASTEiJ_G0036682.1 mouse_genomes_project 4 6275526 6275689 - Gm24152 snRNA snRNA MGP_CASTEiJ_T0013997.1 MGP_CASTEiJ_G0012160.1 mouse_genomes_project 4 22372490 22373310 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066257.1 MGP_CASTEiJ_G0027555.1 mouse_genomes_project 4 85225783 85505395 - MGP_CASTEiJ_P0066257 Mllt3 protein_coding protein_coding MGP_CASTEiJ_T0066258.1 MGP_CASTEiJ_G0027555.1 mouse_genomes_project 4 85228542 85267961 - MGP_CASTEiJ_P0066258 Mllt3 protein_coding protein_coding MGP_CASTEiJ_T0066259.1 MGP_CASTEiJ_G0027555.1 mouse_genomes_project 4 85229770 85267970 - MGP_CASTEiJ_P0066259 Mllt3 protein_coding protein_coding MGP_CASTEiJ_T0066260.1 MGP_CASTEiJ_G0027555.1 mouse_genomes_project 4 85229807 85267941 - MGP_CASTEiJ_P0066260 Mllt3 protein_coding protein_coding MGP_CASTEiJ_T0066261.1 MGP_CASTEiJ_G0027555.1 mouse_genomes_project 4 85250213 85505312 - Mllt3 protein_coding processed_transcript MGP_CASTEiJ_T0066262.1 MGP_CASTEiJ_G0027555.1 mouse_genomes_project 4 85296193 85341140 - Mllt3 protein_coding processed_transcript MGP_CASTEiJ_T0066263.1 MGP_CASTEiJ_G0027555.1 mouse_genomes_project 4 85300983 85503903 - Mllt3 protein_coding retained_intron MGP_CASTEiJ_T0066264.1 MGP_CASTEiJ_G0027555.1 mouse_genomes_project 4 85304648 85503903 - MGP_CASTEiJ_P0066264 Mllt3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0099803.1 MGP_CASTEiJ_G0036716.1 mouse_genomes_project 4 93125044 93125206 + Gm25004 snRNA snRNA MGP_CASTEiJ_T0007824.1 MGP_CASTEiJ_G0006403.1 mouse_genomes_project 4 147466942 147478610 + Gm13206 lincRNA lincRNA MGP_CASTEiJ_T0066404.1 MGP_CASTEiJ_G0027603.1 mouse_genomes_project 4 95149517 95168449 - E130114P18Rik protein_coding processed_transcript MGP_CASTEiJ_T0066405.1 MGP_CASTEiJ_G0027603.1 mouse_genomes_project 4 95149517 95168465 - E130114P18Rik protein_coding processed_transcript MGP_CASTEiJ_T0066406.1 MGP_CASTEiJ_G0027603.1 mouse_genomes_project 4 95149517 95168425 - E130114P18Rik protein_coding processed_transcript MGP_CASTEiJ_T0066407.1 MGP_CASTEiJ_G0027603.1 mouse_genomes_project 4 95149517 95168436 - MGP_CASTEiJ_P0066407 E130114P18Rik protein_coding protein_coding MGP_CASTEiJ_T0066408.1 MGP_CASTEiJ_G0027603.1 mouse_genomes_project 4 95149517 95371230 - MGP_CASTEiJ_P0066408 E130114P18Rik protein_coding protein_coding MGP_CASTEiJ_T0066409.1 MGP_CASTEiJ_G0027603.1 mouse_genomes_project 4 95149517 95168458 - MGP_CASTEiJ_P0066409 E130114P18Rik protein_coding protein_coding MGP_CASTEiJ_T0066410.1 MGP_CASTEiJ_G0027603.1 mouse_genomes_project 4 95150559 95280983 - MGP_CASTEiJ_P0066410 E130114P18Rik protein_coding protein_coding MGP_CASTEiJ_T0066411.1 MGP_CASTEiJ_G0027603.1 mouse_genomes_project 4 95157176 95168441 - E130114P18Rik protein_coding processed_transcript MGP_CASTEiJ_T0066412.1 MGP_CASTEiJ_G0027603.1 mouse_genomes_project 4 95269490 95371260 - E130114P18Rik protein_coding processed_transcript MGP_CASTEiJ_T0065112.1 MGP_CASTEiJ_G0027314.1 mouse_genomes_project 4 39039602 39113359 - MGP_CASTEiJ_P0065112 Kif24 protein_coding protein_coding MGP_CASTEiJ_T0065113.1 MGP_CASTEiJ_G0027314.1 mouse_genomes_project 4 39040468 39113367 - MGP_CASTEiJ_P0065113 Kif24 protein_coding protein_coding MGP_CASTEiJ_T0065114.1 MGP_CASTEiJ_G0027314.1 mouse_genomes_project 4 39040839 39113146 - MGP_CASTEiJ_P0065114 Kif24 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065115.1 MGP_CASTEiJ_G0027314.1 mouse_genomes_project 4 39044042 39059796 - Kif24 protein_coding processed_transcript MGP_CASTEiJ_T0065116.1 MGP_CASTEiJ_G0027314.1 mouse_genomes_project 4 39052655 39054141 - Kif24 protein_coding processed_transcript MGP_CASTEiJ_T0065117.1 MGP_CASTEiJ_G0027314.1 mouse_genomes_project 4 39064980 39113359 - Kif24 protein_coding processed_transcript MGP_CASTEiJ_T0065118.1 MGP_CASTEiJ_G0027314.1 mouse_genomes_project 4 39081073 39113365 - MGP_CASTEiJ_P0065118 Kif24 protein_coding protein_coding MGP_CASTEiJ_T0065119.1 MGP_CASTEiJ_G0027314.1 mouse_genomes_project 4 39099823 39113365 - Kif24 protein_coding processed_transcript MGP_CASTEiJ_T0017313.1 MGP_CASTEiJ_G0014868.1 mouse_genomes_project 4 75466614 75468870 + B230208B08Rik processed_transcript processed_transcript MGP_CASTEiJ_T0013931.1 MGP_CASTEiJ_G0012094.1 mouse_genomes_project 4 199220 199814 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099813.1 MGP_CASTEiJ_G0036726.1 mouse_genomes_project 4 106510599 106510702 + Gm23138 snRNA snRNA MGP_CASTEiJ_T0067260.1 MGP_CASTEiJ_G0027769.1 mouse_genomes_project 4 114652351 114656736 - MGP_CASTEiJ_P0067260 Urod protein_coding protein_coding MGP_CASTEiJ_T0067261.1 MGP_CASTEiJ_G0027769.1 mouse_genomes_project 4 114652543 114653992 - Urod protein_coding retained_intron MGP_CASTEiJ_T0067262.1 MGP_CASTEiJ_G0027769.1 mouse_genomes_project 4 114652611 114654213 - Urod protein_coding retained_intron MGP_CASTEiJ_T0067263.1 MGP_CASTEiJ_G0027769.1 mouse_genomes_project 4 114653402 114656687 - Urod protein_coding retained_intron MGP_CASTEiJ_T0067264.1 MGP_CASTEiJ_G0027769.1 mouse_genomes_project 4 114653787 114656680 - MGP_CASTEiJ_P0067264 Urod protein_coding protein_coding MGP_CASTEiJ_T0067265.1 MGP_CASTEiJ_G0027769.1 mouse_genomes_project 4 114654605 114656669 - Urod protein_coding retained_intron MGP_CASTEiJ_T0067266.1 MGP_CASTEiJ_G0027769.1 mouse_genomes_project 4 114655105 114656668 - Urod protein_coding retained_intron MGP_CASTEiJ_T0067267.1 MGP_CASTEiJ_G0027769.1 mouse_genomes_project 4 114655274 114655919 - Urod protein_coding processed_transcript MGP_CASTEiJ_T0067268.1 MGP_CASTEiJ_G0027769.1 mouse_genomes_project 4 114655429 114656663 - Urod protein_coding retained_intron MGP_CASTEiJ_T0067269.1 MGP_CASTEiJ_G0027769.1 mouse_genomes_project 4 114655601 114656703 - Urod protein_coding retained_intron MGP_CASTEiJ_T0065863.1 MGP_CASTEiJ_G0027472.1 mouse_genomes_project 4 57497654 57575181 - MGP_CASTEiJ_P0065863 AI481877 protein_coding protein_coding MGP_CASTEiJ_T0065864.1 MGP_CASTEiJ_G0027472.1 mouse_genomes_project 4 57538195 57569866 - AI481877 protein_coding retained_intron MGP_CASTEiJ_T0066003.1 MGP_CASTEiJ_G0027504.1 mouse_genomes_project 4 60472138 60480658 + MGP_CASTEiJ_P0066003 Atp6v1g1 protein_coding protein_coding MGP_CASTEiJ_T0066004.1 MGP_CASTEiJ_G0027504.1 mouse_genomes_project 4 60472162 60489418 + MGP_CASTEiJ_P0066004 Atp6v1g1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099788.1 MGP_CASTEiJ_G0036701.1 mouse_genomes_project 4 43388079 43388186 + Gm22055 snRNA snRNA MGP_CASTEiJ_T0069250.1 MGP_CASTEiJ_G0028202.1 mouse_genomes_project 4 143463668 143466429 + MGP_CASTEiJ_P0069250 Gm13088 protein_coding protein_coding MGP_CASTEiJ_T0098385.1 MGP_CASTEiJ_G0035316.1 mouse_genomes_project 4 155481404 155483547 + pseudogene pseudogene MGP_CASTEiJ_T0014252.1 MGP_CASTEiJ_G0012415.1 mouse_genomes_project 4 115477988 115478303 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007765.1 MGP_CASTEiJ_G0006360.1 mouse_genomes_project 4 126988637 126989614 + Gm12958 lincRNA lincRNA MGP_CASTEiJ_T0014242.1 MGP_CASTEiJ_G0012405.1 mouse_genomes_project 4 113291068 113292146 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014246.1 MGP_CASTEiJ_G0012409.1 mouse_genomes_project 4 114537374 114538249 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101049.1 MGP_CASTEiJ_G0037962.1 mouse_genomes_project 4 59669891 59670024 + Gm24117 snoRNA snoRNA MGP_CASTEiJ_T0014013.1 MGP_CASTEiJ_G0012176.1 mouse_genomes_project 4 25615052 25615471 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004423.1 MGP_CASTEiJ_G0003849.1 mouse_genomes_project 4 133924568 133925483 - Gm16224 antisense antisense MGP_CASTEiJ_T0069524.1 MGP_CASTEiJ_G0028267.1 mouse_genomes_project 4 149521727 149536489 - MGP_CASTEiJ_P0069524 Car6 protein_coding protein_coding MGP_CASTEiJ_T0069525.1 MGP_CASTEiJ_G0028267.1 mouse_genomes_project 4 149521727 149533773 - MGP_CASTEiJ_P0069525 Car6 protein_coding protein_coding MGP_CASTEiJ_T0069526.1 MGP_CASTEiJ_G0028267.1 mouse_genomes_project 4 149521924 149531427 - Car6 protein_coding processed_transcript MGP_CASTEiJ_T0069527.1 MGP_CASTEiJ_G0028267.1 mouse_genomes_project 4 149522957 149533506 - Car6 protein_coding processed_transcript MGP_CASTEiJ_T0066297.1 MGP_CASTEiJ_G0027574.1 mouse_genomes_project 4 86658768 86709689 + MGP_CASTEiJ_P0066297 Mtap protein_coding protein_coding MGP_CASTEiJ_T0066298.1 MGP_CASTEiJ_G0027574.1 mouse_genomes_project 4 86659138 86709690 + MGP_CASTEiJ_P0066298 Mtap protein_coding unknown_likely_coding MGP_CASTEiJ_T0066299.1 MGP_CASTEiJ_G0027574.1 mouse_genomes_project 4 86704968 86708082 + Mtap protein_coding processed_transcript MGP_CASTEiJ_T0069830.1 MGP_CASTEiJ_G0028315.1 mouse_genomes_project 4 154590155 154619832 + MGP_CASTEiJ_P0069830 Mmel1 protein_coding protein_coding MGP_CASTEiJ_T0069831.1 MGP_CASTEiJ_G0028315.1 mouse_genomes_project 4 154590155 154619825 + MGP_CASTEiJ_P0069831 Mmel1 protein_coding protein_coding MGP_CASTEiJ_T0069832.1 MGP_CASTEiJ_G0028315.1 mouse_genomes_project 4 154590206 154619832 + MGP_CASTEiJ_P0069832 Mmel1 protein_coding protein_coding MGP_CASTEiJ_T0069833.1 MGP_CASTEiJ_G0028315.1 mouse_genomes_project 4 154592144 154619825 + MGP_CASTEiJ_P0069833 Mmel1 protein_coding protein_coding MGP_CASTEiJ_T0069834.1 MGP_CASTEiJ_G0028315.1 mouse_genomes_project 4 154592178 154619825 + MGP_CASTEiJ_P0069834 Mmel1 protein_coding protein_coding MGP_CASTEiJ_T0069835.1 MGP_CASTEiJ_G0028315.1 mouse_genomes_project 4 154603097 154607199 + MGP_CASTEiJ_P0069835 Mmel1 protein_coding protein_coding MGP_CASTEiJ_T0069836.1 MGP_CASTEiJ_G0028315.1 mouse_genomes_project 4 154617119 154618251 + Mmel1 protein_coding retained_intron MGP_CASTEiJ_T0069371.1 MGP_CASTEiJ_G0028242.1 mouse_genomes_project 4 147770773 147773897 + MGP_CASTEiJ_P0069371 Srm protein_coding protein_coding MGP_CASTEiJ_T0069372.1 MGP_CASTEiJ_G0028242.1 mouse_genomes_project 4 147771187 147773477 + Srm protein_coding retained_intron MGP_CASTEiJ_T0069373.1 MGP_CASTEiJ_G0028242.1 mouse_genomes_project 4 147773170 147774271 + Srm protein_coding processed_transcript MGP_CASTEiJ_T0010309.1 MGP_CASTEiJ_G0008497.1 mouse_genomes_project 4 97374456 97374545 + Gm23366 miRNA miRNA MGP_CASTEiJ_T0069072.1 MGP_CASTEiJ_G0028159.1 mouse_genomes_project 4 140134039 140159404 - MGP_CASTEiJ_P0069072 Padi3 protein_coding protein_coding MGP_CASTEiJ_T0069073.1 MGP_CASTEiJ_G0028159.1 mouse_genomes_project 4 140134043 140152630 - MGP_CASTEiJ_P0069073 Padi3 protein_coding protein_coding MGP_CASTEiJ_T0014330.1 MGP_CASTEiJ_G0012493.1 mouse_genomes_project 4 147154469 147155230 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099829.1 MGP_CASTEiJ_G0036742.1 mouse_genomes_project 4 124373403 124373500 - Gm25323 snRNA snRNA MGP_CASTEiJ_T0068631.1 MGP_CASTEiJ_G0028059.1 mouse_genomes_project 4 133254734 133264458 - MGP_CASTEiJ_P0068631 Mtfr1l protein_coding protein_coding MGP_CASTEiJ_T0068632.1 MGP_CASTEiJ_G0028059.1 mouse_genomes_project 4 133254741 133264577 - MGP_CASTEiJ_P0068632 Mtfr1l protein_coding protein_coding MGP_CASTEiJ_T0068633.1 MGP_CASTEiJ_G0028059.1 mouse_genomes_project 4 133254748 133264488 - MGP_CASTEiJ_P0068633 Mtfr1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068634.1 MGP_CASTEiJ_G0028059.1 mouse_genomes_project 4 133257556 133264448 - Mtfr1l protein_coding retained_intron MGP_CASTEiJ_T0068635.1 MGP_CASTEiJ_G0028059.1 mouse_genomes_project 4 133258297 133264286 - MGP_CASTEiJ_P0068635 Mtfr1l protein_coding protein_coding MGP_CASTEiJ_T0068636.1 MGP_CASTEiJ_G0028059.1 mouse_genomes_project 4 133258332 133264577 - MGP_CASTEiJ_P0068636 Mtfr1l protein_coding protein_coding MGP_CASTEiJ_T0068637.1 MGP_CASTEiJ_G0028059.1 mouse_genomes_project 4 133258404 133264234 - Mtfr1l protein_coding retained_intron MGP_CASTEiJ_T0007685.1 MGP_CASTEiJ_G0006300.1 mouse_genomes_project 4 79309028 79335283 - Gm11264 lincRNA lincRNA MGP_CASTEiJ_T0068485.1 MGP_CASTEiJ_G0028031.1 mouse_genomes_project 4 132256812 132284480 - MGP_CASTEiJ_P0068485 Zdhhc18 protein_coding protein_coding MGP_CASTEiJ_T0068486.1 MGP_CASTEiJ_G0028031.1 mouse_genomes_project 4 132260181 132266558 - Zdhhc18 protein_coding retained_intron MGP_CASTEiJ_T0068487.1 MGP_CASTEiJ_G0028031.1 mouse_genomes_project 4 132260251 132263995 - Zdhhc18 protein_coding processed_transcript MGP_CASTEiJ_T0068488.1 MGP_CASTEiJ_G0028031.1 mouse_genomes_project 4 132264276 132266333 - Zdhhc18 protein_coding retained_intron MGP_CASTEiJ_T0068489.1 MGP_CASTEiJ_G0028031.1 mouse_genomes_project 4 132278339 132302521 - Zdhhc18 protein_coding processed_transcript MGP_CASTEiJ_T0069427.1 MGP_CASTEiJ_G0028249.1 mouse_genomes_project 4 148357180 148359323 - MGP_CASTEiJ_P0069427 Cort protein_coding unknown_likely_coding MGP_CASTEiJ_T0069428.1 MGP_CASTEiJ_G0028249.1 mouse_genomes_project 4 148357180 148358765 - MGP_CASTEiJ_P0069428 Cort protein_coding protein_coding MGP_CASTEiJ_T0066294.1 MGP_CASTEiJ_G0027571.1 mouse_genomes_project 4 86323127 86323688 + MGP_CASTEiJ_P0066294 protein_coding protein_coding MGP_CASTEiJ_T0004442.1 MGP_CASTEiJ_G0003865.1 mouse_genomes_project 4 141045814 141047390 + AI507597 antisense antisense MGP_CASTEiJ_T0004443.1 MGP_CASTEiJ_G0003865.1 mouse_genomes_project 4 141046143 141047390 + AI507597 antisense antisense MGP_CASTEiJ_T0067072.1 MGP_CASTEiJ_G0027730.1 mouse_genomes_project 4 112980022 113039449 + MGP_CASTEiJ_P0067072 protein_coding protein_coding MGP_CASTEiJ_T0069090.1 MGP_CASTEiJ_G0028164.1 mouse_genomes_project 4 140376604 140382038 + MGP_CASTEiJ_P0069090 Mfap2 protein_coding protein_coding MGP_CASTEiJ_T0069091.1 MGP_CASTEiJ_G0028164.1 mouse_genomes_project 4 140376820 140381236 + Mfap2 protein_coding processed_transcript MGP_CASTEiJ_T0069092.1 MGP_CASTEiJ_G0028164.1 mouse_genomes_project 4 140376827 140382208 + MGP_CASTEiJ_P0069092 Mfap2 protein_coding protein_coding MGP_CASTEiJ_T0069093.1 MGP_CASTEiJ_G0028164.1 mouse_genomes_project 4 140376842 140382206 + MGP_CASTEiJ_P0069093 Mfap2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065182.1 MGP_CASTEiJ_G0027330.1 mouse_genomes_project 4 40495006 40501191 - MGP_CASTEiJ_P0065182 Fam205c protein_coding protein_coding MGP_CASTEiJ_T0065183.1 MGP_CASTEiJ_G0027330.1 mouse_genomes_project 4 40495205 40501183 - MGP_CASTEiJ_P0065183 Fam205c protein_coding protein_coding MGP_CASTEiJ_T0065184.1 MGP_CASTEiJ_G0027330.1 mouse_genomes_project 4 40495206 40552006 - MGP_CASTEiJ_P0065184 Fam205c protein_coding unknown_likely_coding MGP_CASTEiJ_T0065185.1 MGP_CASTEiJ_G0027330.1 mouse_genomes_project 4 40498508 40500708 - Fam205c protein_coding processed_transcript MGP_CASTEiJ_T0065186.1 MGP_CASTEiJ_G0027330.1 mouse_genomes_project 4 40498696 40501222 - Fam205c protein_coding processed_transcript MGP_CASTEiJ_T0067550.1 MGP_CASTEiJ_G0027830.1 mouse_genomes_project 4 117399323 117408538 - MGP_CASTEiJ_P0067550 AA415398 protein_coding protein_coding MGP_CASTEiJ_T0067551.1 MGP_CASTEiJ_G0027830.1 mouse_genomes_project 4 117401411 117405009 - AA415398 protein_coding processed_transcript MGP_CASTEiJ_T0067552.1 MGP_CASTEiJ_G0027830.1 mouse_genomes_project 4 117401638 117408898 - AA415398 protein_coding processed_transcript MGP_CASTEiJ_T0067553.1 MGP_CASTEiJ_G0027830.1 mouse_genomes_project 4 117403303 117409297 - AA415398 protein_coding processed_transcript MGP_CASTEiJ_T0004464.1 MGP_CASTEiJ_G0003880.1 mouse_genomes_project 4 148593271 148593714 + Ube4bos2 antisense antisense MGP_CASTEiJ_T0068945.1 MGP_CASTEiJ_G0028124.1 mouse_genomes_project 4 137412963 137418189 - Cda protein_coding retained_intron MGP_CASTEiJ_T0068946.1 MGP_CASTEiJ_G0028124.1 mouse_genomes_project 4 137413067 137445227 - MGP_CASTEiJ_P0068946 Cda protein_coding protein_coding MGP_CASTEiJ_T0004488.1 MGP_CASTEiJ_G0003899.1 mouse_genomes_project 4 155555155 155565549 + Atad3aos antisense antisense MGP_CASTEiJ_T0004489.1 MGP_CASTEiJ_G0003899.1 mouse_genomes_project 4 155555169 155556233 + Atad3aos antisense antisense MGP_CASTEiJ_T0014296.1 MGP_CASTEiJ_G0012459.1 mouse_genomes_project 4 130737541 130737862 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069910.1 MGP_CASTEiJ_G0028328.1 mouse_genomes_project 4 155167404 155227892 + MGP_CASTEiJ_P0069910 protein_coding protein_coding MGP_CASTEiJ_T0069911.1 MGP_CASTEiJ_G0028328.1 mouse_genomes_project 4 155167450 155174251 + protein_coding retained_intron MGP_CASTEiJ_T0069912.1 MGP_CASTEiJ_G0028328.1 mouse_genomes_project 4 155167518 155202741 + protein_coding processed_transcript MGP_CASTEiJ_T0069913.1 MGP_CASTEiJ_G0028328.1 mouse_genomes_project 4 155167518 155180303 + MGP_CASTEiJ_P0069913 protein_coding protein_coding MGP_CASTEiJ_T0069914.1 MGP_CASTEiJ_G0028328.1 mouse_genomes_project 4 155167518 155228296 + MGP_CASTEiJ_P0069914 protein_coding protein_coding MGP_CASTEiJ_T0069915.1 MGP_CASTEiJ_G0028328.1 mouse_genomes_project 4 155180303 155208650 + protein_coding retained_intron MGP_CASTEiJ_T0069916.1 MGP_CASTEiJ_G0028328.1 mouse_genomes_project 4 155188080 155208483 + protein_coding processed_transcript MGP_CASTEiJ_T0069917.1 MGP_CASTEiJ_G0028328.1 mouse_genomes_project 4 155212736 155227892 + protein_coding retained_intron MGP_CASTEiJ_T0069918.1 MGP_CASTEiJ_G0028328.1 mouse_genomes_project 4 155223489 155228017 + protein_coding retained_intron MGP_CASTEiJ_T0069919.1 MGP_CASTEiJ_G0028328.1 mouse_genomes_project 4 155223536 155227967 + protein_coding retained_intron MGP_CASTEiJ_T0064929.1 MGP_CASTEiJ_G0027267.1 mouse_genomes_project 4 30023462 30174068 - MGP_CASTEiJ_P0064929 Ankrd6 protein_coding protein_coding MGP_CASTEiJ_T0064930.1 MGP_CASTEiJ_G0027267.1 mouse_genomes_project 4 30025167 30079849 - MGP_CASTEiJ_P0064930 Ankrd6 protein_coding protein_coding MGP_CASTEiJ_T0064931.1 MGP_CASTEiJ_G0027267.1 mouse_genomes_project 4 30025540 30084036 - MGP_CASTEiJ_P0064931 Ankrd6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064932.1 MGP_CASTEiJ_G0027267.1 mouse_genomes_project 4 30040680 30042205 - Ankrd6 protein_coding processed_transcript MGP_CASTEiJ_T0064933.1 MGP_CASTEiJ_G0027267.1 mouse_genomes_project 4 30043866 30145037 - Ankrd6 protein_coding processed_transcript MGP_CASTEiJ_T0064934.1 MGP_CASTEiJ_G0027267.1 mouse_genomes_project 4 30046526 30080090 - Ankrd6 protein_coding processed_transcript MGP_CASTEiJ_T0066657.1 MGP_CASTEiJ_G0027655.1 mouse_genomes_project 4 104523280 104525728 + MGP_CASTEiJ_P0066657 Pars2 protein_coding protein_coding MGP_CASTEiJ_T0066658.1 MGP_CASTEiJ_G0027655.1 mouse_genomes_project 4 104523309 104527469 + MGP_CASTEiJ_P0066658 Pars2 protein_coding protein_coding MGP_CASTEiJ_T0066659.1 MGP_CASTEiJ_G0027655.1 mouse_genomes_project 4 104523314 104525055 + Pars2 protein_coding processed_transcript MGP_CASTEiJ_T0066660.1 MGP_CASTEiJ_G0027655.1 mouse_genomes_project 4 104523317 104527471 + MGP_CASTEiJ_P0066660 Pars2 protein_coding protein_coding MGP_CASTEiJ_T0010327.1 MGP_CASTEiJ_G0008515.1 mouse_genomes_project 4 128130787 128130859 - Mir7016 miRNA miRNA MGP_CASTEiJ_T0068229.1 MGP_CASTEiJ_G0027976.1 mouse_genomes_project 4 128797547 128818804 - MGP_CASTEiJ_P0068229 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0007701.1 MGP_CASTEiJ_G0006314.1 mouse_genomes_project 4 91081976 91303684 - Gm12649 lincRNA lincRNA MGP_CASTEiJ_T0017331.1 MGP_CASTEiJ_G0014883.1 mouse_genomes_project 4 107699901 107711151 - processed_transcript processed_transcript MGP_CASTEiJ_T0017332.1 MGP_CASTEiJ_G0014883.1 mouse_genomes_project 4 107700857 107711177 - processed_transcript processed_transcript MGP_CASTEiJ_T0017333.1 MGP_CASTEiJ_G0014883.1 mouse_genomes_project 4 107700984 107707442 - processed_transcript processed_transcript MGP_CASTEiJ_T0017334.1 MGP_CASTEiJ_G0014883.1 mouse_genomes_project 4 107701935 107710932 - processed_transcript processed_transcript MGP_CASTEiJ_T0004425.1 MGP_CASTEiJ_G0003851.1 mouse_genomes_project 4 134873308 134881224 + Gm13008 antisense antisense MGP_CASTEiJ_T0064752.1 MGP_CASTEiJ_G0027227.1 mouse_genomes_project 4 12647487 12675544 - MGP_CASTEiJ_P0064752 Decr1 protein_coding protein_coding MGP_CASTEiJ_T0064753.1 MGP_CASTEiJ_G0027227.1 mouse_genomes_project 4 12663002 12675312 - Decr1 protein_coding processed_transcript MGP_CASTEiJ_T0064754.1 MGP_CASTEiJ_G0027227.1 mouse_genomes_project 4 12673729 12674526 - Decr1 protein_coding processed_transcript MGP_CASTEiJ_T0101018.1 MGP_CASTEiJ_G0037931.1 mouse_genomes_project 4 3393023 3393155 - Gm22473 snoRNA snoRNA MGP_CASTEiJ_T0007787.1 MGP_CASTEiJ_G0006376.1 mouse_genomes_project 4 130760384 130763185 + Gm28874 lincRNA lincRNA MGP_CASTEiJ_T0007821.1 MGP_CASTEiJ_G0006400.1 mouse_genomes_project 4 140741929 140744982 + Gm13074 lincRNA lincRNA MGP_CASTEiJ_T0068100.1 MGP_CASTEiJ_G0027957.1 mouse_genomes_project 4 128013932 128014575 - Fam167b protein_coding processed_transcript MGP_CASTEiJ_T0068101.1 MGP_CASTEiJ_G0027957.1 mouse_genomes_project 4 128013932 128015667 - MGP_CASTEiJ_P0068101 Fam167b protein_coding protein_coding MGP_CASTEiJ_T0066286.1 MGP_CASTEiJ_G0027563.1 mouse_genomes_project 4 86103047 86103866 - MGP_CASTEiJ_P0066286 Ifna13 protein_coding protein_coding MGP_CASTEiJ_T0007603.1 MGP_CASTEiJ_G0006231.1 mouse_genomes_project 4 2185109 2195428 + 4930423M02Rik lincRNA lincRNA MGP_CASTEiJ_T0007604.1 MGP_CASTEiJ_G0006231.1 mouse_genomes_project 4 2185117 2194900 + 4930423M02Rik lincRNA lincRNA MGP_CASTEiJ_T0067192.1 MGP_CASTEiJ_G0027757.1 mouse_genomes_project 4 114186302 114229203 + MGP_CASTEiJ_P0067192 Gpbp1l1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067193.1 MGP_CASTEiJ_G0027757.1 mouse_genomes_project 4 114186477 114229198 + MGP_CASTEiJ_P0067193 Gpbp1l1 protein_coding protein_coding MGP_CASTEiJ_T0067194.1 MGP_CASTEiJ_G0027757.1 mouse_genomes_project 4 114186898 114228374 + MGP_CASTEiJ_P0067194 Gpbp1l1 protein_coding protein_coding MGP_CASTEiJ_T0067195.1 MGP_CASTEiJ_G0027757.1 mouse_genomes_project 4 114209780 114213653 + Gpbp1l1 protein_coding processed_transcript MGP_CASTEiJ_T0067196.1 MGP_CASTEiJ_G0027757.1 mouse_genomes_project 4 114213563 114223145 + Gpbp1l1 protein_coding processed_transcript MGP_CASTEiJ_T0014305.1 MGP_CASTEiJ_G0012468.1 mouse_genomes_project 4 134107017 134107207 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068244.1 MGP_CASTEiJ_G0027982.1 mouse_genomes_project 4 129028984 129152301 + MGP_CASTEiJ_P0068244 Pum1 protein_coding protein_coding MGP_CASTEiJ_T0068245.1 MGP_CASTEiJ_G0027982.1 mouse_genomes_project 4 129029022 129152299 + MGP_CASTEiJ_P0068245 Pum1 protein_coding protein_coding MGP_CASTEiJ_T0068246.1 MGP_CASTEiJ_G0027982.1 mouse_genomes_project 4 129029022 129152299 + MGP_CASTEiJ_P0068246 Pum1 protein_coding protein_coding MGP_CASTEiJ_T0068247.1 MGP_CASTEiJ_G0027982.1 mouse_genomes_project 4 129029029 129087280 + Pum1 protein_coding retained_intron MGP_CASTEiJ_T0068248.1 MGP_CASTEiJ_G0027982.1 mouse_genomes_project 4 129029030 129115477 + MGP_CASTEiJ_P0068248 Pum1 protein_coding protein_coding MGP_CASTEiJ_T0068249.1 MGP_CASTEiJ_G0027982.1 mouse_genomes_project 4 129029049 129151003 + MGP_CASTEiJ_P0068249 Pum1 protein_coding protein_coding MGP_CASTEiJ_T0068250.1 MGP_CASTEiJ_G0027982.1 mouse_genomes_project 4 129029069 129150991 + MGP_CASTEiJ_P0068250 Pum1 protein_coding protein_coding MGP_CASTEiJ_T0007721.1 MGP_CASTEiJ_G0006330.1 mouse_genomes_project 4 103920271 103939776 - Gm12729 lincRNA lincRNA MGP_CASTEiJ_T0010311.1 MGP_CASTEiJ_G0008499.1 mouse_genomes_project 4 105377066 105377151 + Gm24804 miRNA miRNA MGP_CASTEiJ_T0066882.1 MGP_CASTEiJ_G0027690.1 mouse_genomes_project 4 106637620 106651153 + MGP_CASTEiJ_P0066882 Cc2d1b protein_coding protein_coding MGP_CASTEiJ_T0066883.1 MGP_CASTEiJ_G0027690.1 mouse_genomes_project 4 106641107 106643603 + MGP_CASTEiJ_P0066883 Cc2d1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066884.1 MGP_CASTEiJ_G0027690.1 mouse_genomes_project 4 106643351 106644359 + Cc2d1b protein_coding retained_intron MGP_CASTEiJ_T0066885.1 MGP_CASTEiJ_G0027690.1 mouse_genomes_project 4 106643616 106644700 + Cc2d1b protein_coding retained_intron MGP_CASTEiJ_T0066886.1 MGP_CASTEiJ_G0027690.1 mouse_genomes_project 4 106643644 106651660 + Cc2d1b protein_coding retained_intron MGP_CASTEiJ_T0066887.1 MGP_CASTEiJ_G0027690.1 mouse_genomes_project 4 106647162 106647975 + Cc2d1b protein_coding retained_intron MGP_CASTEiJ_T0066888.1 MGP_CASTEiJ_G0027690.1 mouse_genomes_project 4 106647196 106648006 + Cc2d1b protein_coding processed_transcript MGP_CASTEiJ_T0066889.1 MGP_CASTEiJ_G0027690.1 mouse_genomes_project 4 106648022 106650818 + Cc2d1b protein_coding retained_intron MGP_CASTEiJ_T0065875.1 MGP_CASTEiJ_G0027475.1 mouse_genomes_project 4 57955774 58037400 - MGP_CASTEiJ_P0065875 Ptbp3 protein_coding protein_coding MGP_CASTEiJ_T0065876.1 MGP_CASTEiJ_G0027475.1 mouse_genomes_project 4 57959157 58037529 - MGP_CASTEiJ_P0065876 Ptbp3 protein_coding protein_coding MGP_CASTEiJ_T0065877.1 MGP_CASTEiJ_G0027475.1 mouse_genomes_project 4 57960834 57969753 - Ptbp3 protein_coding retained_intron MGP_CASTEiJ_T0065878.1 MGP_CASTEiJ_G0027475.1 mouse_genomes_project 4 57965377 57978480 - MGP_CASTEiJ_P0065878 Ptbp3 protein_coding protein_coding MGP_CASTEiJ_T0065879.1 MGP_CASTEiJ_G0027475.1 mouse_genomes_project 4 57965382 58037497 - MGP_CASTEiJ_P0065879 Ptbp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065880.1 MGP_CASTEiJ_G0027475.1 mouse_genomes_project 4 57978383 58037502 - MGP_CASTEiJ_P0065880 Ptbp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065881.1 MGP_CASTEiJ_G0027475.1 mouse_genomes_project 4 57978433 58037510 - MGP_CASTEiJ_P0065881 Ptbp3 protein_coding protein_coding MGP_CASTEiJ_T0065882.1 MGP_CASTEiJ_G0027475.1 mouse_genomes_project 4 57985794 57999975 - Ptbp3 protein_coding retained_intron MGP_CASTEiJ_T0065883.1 MGP_CASTEiJ_G0027475.1 mouse_genomes_project 4 58004011 58036980 - MGP_CASTEiJ_P0065883 Ptbp3 protein_coding protein_coding MGP_CASTEiJ_T0007829.1 MGP_CASTEiJ_G0006408.1 mouse_genomes_project 4 149359495 149369109 + Gm13067 lincRNA lincRNA MGP_CASTEiJ_T0014003.1 MGP_CASTEiJ_G0012166.1 mouse_genomes_project 4 23976552 23976800 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068478.1 MGP_CASTEiJ_G0028027.1 mouse_genomes_project 4 132197678 132200755 + MGP_CASTEiJ_P0068478 Nr0b2 protein_coding protein_coding MGP_CASTEiJ_T0068465.1 MGP_CASTEiJ_G0028024.1 mouse_genomes_project 4 132129658 132138118 - MGP_CASTEiJ_P0068465 Trnp1 protein_coding protein_coding MGP_CASTEiJ_T0068466.1 MGP_CASTEiJ_G0028024.1 mouse_genomes_project 4 132129676 132137287 - Trnp1 protein_coding processed_transcript MGP_CASTEiJ_T0068467.1 MGP_CASTEiJ_G0028024.1 mouse_genomes_project 4 132130068 132137395 - MGP_CASTEiJ_P0068467 Trnp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070124.1 MGP_CASTEiJ_G0028368.1 mouse_genomes_project 4 156039788 156048606 - MGP_CASTEiJ_P0070124 Samd11 protein_coding protein_coding MGP_CASTEiJ_T0070125.1 MGP_CASTEiJ_G0028368.1 mouse_genomes_project 4 156040478 156056265 - MGP_CASTEiJ_P0070125 Samd11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070126.1 MGP_CASTEiJ_G0028368.1 mouse_genomes_project 4 156040478 156056265 - MGP_CASTEiJ_P0070126 Samd11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070127.1 MGP_CASTEiJ_G0028368.1 mouse_genomes_project 4 156040528 156050347 - MGP_CASTEiJ_P0070127 Samd11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014103.1 MGP_CASTEiJ_G0012266.1 mouse_genomes_project 4 57548014 57548758 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064771.1 MGP_CASTEiJ_G0027233.1 mouse_genomes_project 4 16080066 16338534 + MGP_CASTEiJ_P0064771 Cngb3 protein_coding protein_coding MGP_CASTEiJ_T0014197.1 MGP_CASTEiJ_G0012360.1 mouse_genomes_project 4 97120049 97120446 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007717.1 MGP_CASTEiJ_G0006327.1 mouse_genomes_project 4 100987999 100989831 + Gm44037 lincRNA lincRNA MGP_CASTEiJ_T0010336.1 MGP_CASTEiJ_G0008524.1 mouse_genomes_project 4 133301949 133302078 - Mir6403 miRNA miRNA MGP_CASTEiJ_T0067710.1 MGP_CASTEiJ_G0027872.1 mouse_genomes_project 4 121718832 121735676 - MGP_CASTEiJ_P0067710 Akirin1 protein_coding protein_coding MGP_CASTEiJ_T0067711.1 MGP_CASTEiJ_G0027872.1 mouse_genomes_project 4 121722684 121728350 - Akirin1 protein_coding processed_transcript MGP_CASTEiJ_T0067712.1 MGP_CASTEiJ_G0027872.1 mouse_genomes_project 4 121723810 121735562 - Akirin1 protein_coding processed_transcript MGP_CASTEiJ_T0065032.1 MGP_CASTEiJ_G0027294.1 mouse_genomes_project 4 37712960 37774155 + MGP_CASTEiJ_P0065032 Aco1 protein_coding protein_coding MGP_CASTEiJ_T0065033.1 MGP_CASTEiJ_G0027294.1 mouse_genomes_project 4 37735293 37740918 + Aco1 protein_coding processed_transcript MGP_CASTEiJ_T0065034.1 MGP_CASTEiJ_G0027294.1 mouse_genomes_project 4 37738451 37747219 + Aco1 protein_coding processed_transcript MGP_CASTEiJ_T0065035.1 MGP_CASTEiJ_G0027294.1 mouse_genomes_project 4 37747895 37773538 + MGP_CASTEiJ_P0065035 Aco1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065036.1 MGP_CASTEiJ_G0027294.1 mouse_genomes_project 4 37762703 37772241 + Aco1 protein_coding processed_transcript MGP_CASTEiJ_T0065757.1 MGP_CASTEiJ_G0027449.1 mouse_genomes_project 4 55075955 55130202 - MGP_CASTEiJ_P0065757 Ikbkap protein_coding protein_coding MGP_CASTEiJ_T0065758.1 MGP_CASTEiJ_G0027449.1 mouse_genomes_project 4 55077287 55084617 - Ikbkap protein_coding retained_intron MGP_CASTEiJ_T0065759.1 MGP_CASTEiJ_G0027449.1 mouse_genomes_project 4 55077290 55090658 - Ikbkap protein_coding retained_intron MGP_CASTEiJ_T0065760.1 MGP_CASTEiJ_G0027449.1 mouse_genomes_project 4 55081274 55085713 - Ikbkap protein_coding retained_intron MGP_CASTEiJ_T0065761.1 MGP_CASTEiJ_G0027449.1 mouse_genomes_project 4 55095183 55100763 - Ikbkap protein_coding retained_intron MGP_CASTEiJ_T0065762.1 MGP_CASTEiJ_G0027449.1 mouse_genomes_project 4 55104608 55107906 - Ikbkap protein_coding retained_intron MGP_CASTEiJ_T0010329.1 MGP_CASTEiJ_G0008517.1 mouse_genomes_project 4 130707836 130707940 - Gm22033 miRNA miRNA MGP_CASTEiJ_T0098596.1 MGP_CASTEiJ_G0035527.1 mouse_genomes_project 4 38943445 38943560 + n-R5s183 rRNA rRNA MGP_CASTEiJ_T0064544.1 MGP_CASTEiJ_G0027181.1 mouse_genomes_project 4 581842 598611 - MGP_CASTEiJ_P0064544 Sdr16c5 protein_coding protein_coding MGP_CASTEiJ_T0064545.1 MGP_CASTEiJ_G0027181.1 mouse_genomes_project 4 591319 595571 - Sdr16c5 protein_coding processed_transcript MGP_CASTEiJ_T0068996.1 MGP_CASTEiJ_G0028142.1 mouse_genomes_project 4 138359491 138458039 + MGP_CASTEiJ_P0068996 Capzb protein_coding protein_coding MGP_CASTEiJ_T0068997.1 MGP_CASTEiJ_G0028142.1 mouse_genomes_project 4 138359536 138458095 + Capzb protein_coding processed_transcript MGP_CASTEiJ_T0068998.1 MGP_CASTEiJ_G0028142.1 mouse_genomes_project 4 138359556 138457550 + MGP_CASTEiJ_P0068998 Capzb protein_coding protein_coding MGP_CASTEiJ_T0068999.1 MGP_CASTEiJ_G0028142.1 mouse_genomes_project 4 138360563 138457719 + MGP_CASTEiJ_P0068999 Capzb protein_coding protein_coding MGP_CASTEiJ_T0069000.1 MGP_CASTEiJ_G0028142.1 mouse_genomes_project 4 138360678 138405644 + Capzb protein_coding retained_intron MGP_CASTEiJ_T0069001.1 MGP_CASTEiJ_G0028142.1 mouse_genomes_project 4 138365834 138428254 + MGP_CASTEiJ_P0069001 Capzb protein_coding protein_coding MGP_CASTEiJ_T0069002.1 MGP_CASTEiJ_G0028142.1 mouse_genomes_project 4 138393151 138453368 + MGP_CASTEiJ_P0069002 Capzb protein_coding protein_coding MGP_CASTEiJ_T0069003.1 MGP_CASTEiJ_G0028142.1 mouse_genomes_project 4 138455221 138456091 + Capzb protein_coding processed_transcript MGP_CASTEiJ_T0068933.1 MGP_CASTEiJ_G0028120.1 mouse_genomes_project 4 137313772 137324739 + MGP_CASTEiJ_P0068933 Sh2d5 protein_coding protein_coding MGP_CASTEiJ_T0068934.1 MGP_CASTEiJ_G0028120.1 mouse_genomes_project 4 137313782 137320683 + MGP_CASTEiJ_P0068934 Sh2d5 protein_coding protein_coding MGP_CASTEiJ_T0068935.1 MGP_CASTEiJ_G0028120.1 mouse_genomes_project 4 137313818 137319090 + Sh2d5 protein_coding processed_transcript MGP_CASTEiJ_T0068936.1 MGP_CASTEiJ_G0028120.1 mouse_genomes_project 4 137313859 137324739 + MGP_CASTEiJ_P0068936 Sh2d5 protein_coding protein_coding MGP_CASTEiJ_T0068937.1 MGP_CASTEiJ_G0028120.1 mouse_genomes_project 4 137320138 137322504 + Sh2d5 protein_coding retained_intron MGP_CASTEiJ_T0007640.1 MGP_CASTEiJ_G0006262.1 mouse_genomes_project 4 38300787 38303054 - Gm6297 lincRNA lincRNA MGP_CASTEiJ_T0014017.1 MGP_CASTEiJ_G0012180.1 mouse_genomes_project 4 27284644 27285180 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067063.1 MGP_CASTEiJ_G0027728.1 mouse_genomes_project 4 112781296 112786506 + MGP_CASTEiJ_P0067063 Pdzk1ip1 protein_coding protein_coding MGP_CASTEiJ_T0067064.1 MGP_CASTEiJ_G0027728.1 mouse_genomes_project 4 112781296 112786506 + MGP_CASTEiJ_P0067064 Pdzk1ip1 protein_coding protein_coding MGP_CASTEiJ_T0067065.1 MGP_CASTEiJ_G0027728.1 mouse_genomes_project 4 112781311 112786511 + MGP_CASTEiJ_P0067065 Pdzk1ip1 protein_coding protein_coding MGP_CASTEiJ_T0067066.1 MGP_CASTEiJ_G0027728.1 mouse_genomes_project 4 112781311 112786511 + MGP_CASTEiJ_P0067066 Pdzk1ip1 protein_coding protein_coding MGP_CASTEiJ_T0067067.1 MGP_CASTEiJ_G0027728.1 mouse_genomes_project 4 112781624 112783960 + Pdzk1ip1 protein_coding processed_transcript MGP_CASTEiJ_T0067068.1 MGP_CASTEiJ_G0027728.1 mouse_genomes_project 4 112782801 112786476 + Pdzk1ip1 protein_coding processed_transcript MGP_CASTEiJ_T0067069.1 MGP_CASTEiJ_G0027728.1 mouse_genomes_project 4 112782868 112783845 + Pdzk1ip1 protein_coding processed_transcript MGP_CASTEiJ_T0067070.1 MGP_CASTEiJ_G0027728.1 mouse_genomes_project 4 112783545 112786476 + Pdzk1ip1 protein_coding processed_transcript MGP_CASTEiJ_T0014286.1 MGP_CASTEiJ_G0012449.1 mouse_genomes_project 4 125016255 125017198 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007796.1 MGP_CASTEiJ_G0006379.1 mouse_genomes_project 4 130865299 130866907 + Gm17300 lincRNA lincRNA MGP_CASTEiJ_T0066575.1 MGP_CASTEiJ_G0027634.1 mouse_genomes_project 4 100743309 100767916 + MGP_CASTEiJ_P0066575 Tctex1d1 protein_coding protein_coding MGP_CASTEiJ_T0066576.1 MGP_CASTEiJ_G0027634.1 mouse_genomes_project 4 100749387 100768146 + MGP_CASTEiJ_P0066576 Tctex1d1 protein_coding protein_coding MGP_CASTEiJ_T0066577.1 MGP_CASTEiJ_G0027634.1 mouse_genomes_project 4 100751643 100769166 + MGP_CASTEiJ_P0066577 Tctex1d1 protein_coding protein_coding MGP_CASTEiJ_T0066578.1 MGP_CASTEiJ_G0027634.1 mouse_genomes_project 4 100754882 100755950 + Tctex1d1 protein_coding processed_transcript MGP_CASTEiJ_T0064725.1 MGP_CASTEiJ_G0027219.1 mouse_genomes_project 4 10398764 10563694 + MGP_CASTEiJ_P0064725 Runx1t1 protein_coding protein_coding MGP_CASTEiJ_T0064726.1 MGP_CASTEiJ_G0027219.1 mouse_genomes_project 4 10406626 10511002 + Runx1t1 protein_coding processed_transcript MGP_CASTEiJ_T0064727.1 MGP_CASTEiJ_G0027219.1 mouse_genomes_project 4 10406626 10563671 + MGP_CASTEiJ_P0064727 Runx1t1 protein_coding protein_coding MGP_CASTEiJ_T0064728.1 MGP_CASTEiJ_G0027219.1 mouse_genomes_project 4 10429991 10560349 + MGP_CASTEiJ_P0064728 Runx1t1 protein_coding protein_coding MGP_CASTEiJ_T0064729.1 MGP_CASTEiJ_G0027219.1 mouse_genomes_project 4 10444895 10561134 + MGP_CASTEiJ_P0064729 Runx1t1 protein_coding protein_coding MGP_CASTEiJ_T0064730.1 MGP_CASTEiJ_G0027219.1 mouse_genomes_project 4 10559257 10559988 + Runx1t1 protein_coding processed_transcript MGP_CASTEiJ_T0067661.1 MGP_CASTEiJ_G0027859.1 mouse_genomes_project 4 120883628 120884717 + MGP_CASTEiJ_P0067661 protein_coding protein_coding MGP_CASTEiJ_T0067662.1 MGP_CASTEiJ_G0027859.1 mouse_genomes_project 4 120883976 120888549 + MGP_CASTEiJ_P0067662 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067663.1 MGP_CASTEiJ_G0027859.1 mouse_genomes_project 4 120886850 120888438 + protein_coding processed_transcript MGP_CASTEiJ_T0067664.1 MGP_CASTEiJ_G0027859.1 mouse_genomes_project 4 120887309 120888488 + protein_coding processed_transcript MGP_CASTEiJ_T0099821.1 MGP_CASTEiJ_G0036734.1 mouse_genomes_project 4 114867735 114867851 + Gm25099 snRNA snRNA MGP_CASTEiJ_T0067882.1 MGP_CASTEiJ_G0027912.1 mouse_genomes_project 4 124767486 124805006 + MGP_CASTEiJ_P0067882 Clspn protein_coding protein_coding MGP_CASTEiJ_T0067883.1 MGP_CASTEiJ_G0027912.1 mouse_genomes_project 4 124767546 124770832 + MGP_CASTEiJ_P0067883 Clspn protein_coding protein_coding MGP_CASTEiJ_T0067884.1 MGP_CASTEiJ_G0027912.1 mouse_genomes_project 4 124767556 124774378 + Clspn protein_coding processed_transcript MGP_CASTEiJ_T0067885.1 MGP_CASTEiJ_G0027912.1 mouse_genomes_project 4 124770823 124776813 + MGP_CASTEiJ_P0067885 Clspn protein_coding protein_coding MGP_CASTEiJ_T0067886.1 MGP_CASTEiJ_G0027912.1 mouse_genomes_project 4 124777109 124788330 + MGP_CASTEiJ_P0067886 Clspn protein_coding protein_coding MGP_CASTEiJ_T0067887.1 MGP_CASTEiJ_G0027912.1 mouse_genomes_project 4 124782963 124785830 + Clspn protein_coding processed_transcript MGP_CASTEiJ_T0067888.1 MGP_CASTEiJ_G0027912.1 mouse_genomes_project 4 124791895 124802435 + Clspn protein_coding processed_transcript MGP_CASTEiJ_T0101017.1 MGP_CASTEiJ_G0037930.1 mouse_genomes_project 4 2243308 2243435 - Gm24337 snoRNA snoRNA MGP_CASTEiJ_T0069781.1 MGP_CASTEiJ_G0028305.1 mouse_genomes_project 4 153695585 153711633 - MGP_CASTEiJ_P0069781 Ccdc27 protein_coding protein_coding MGP_CASTEiJ_T0017339.1 MGP_CASTEiJ_G0014887.1 mouse_genomes_project 4 116802650 116833305 + Gm12861 processed_transcript processed_transcript MGP_CASTEiJ_T0064905.1 MGP_CASTEiJ_G0027263.1 mouse_genomes_project 4 29806540 29808653 - MGP_CASTEiJ_P0064905 Gja10 protein_coding protein_coding MGP_CASTEiJ_T0014262.1 MGP_CASTEiJ_G0012425.1 mouse_genomes_project 4 117424793 117425196 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066103.1 MGP_CASTEiJ_G0027532.1 mouse_genomes_project 4 78129126 78132693 + MGP_CASTEiJ_P0066103 Tyrp1 protein_coding protein_coding MGP_CASTEiJ_T0066104.1 MGP_CASTEiJ_G0027532.1 mouse_genomes_project 4 78129233 78148024 + MGP_CASTEiJ_P0066104 Tyrp1 protein_coding protein_coding MGP_CASTEiJ_T0066105.1 MGP_CASTEiJ_G0027532.1 mouse_genomes_project 4 78129307 78148025 + MGP_CASTEiJ_P0066105 Tyrp1 protein_coding protein_coding MGP_CASTEiJ_T0066106.1 MGP_CASTEiJ_G0027532.1 mouse_genomes_project 4 78142930 78147322 + MGP_CASTEiJ_P0066106 Tyrp1 protein_coding protein_coding MGP_CASTEiJ_T0069234.1 MGP_CASTEiJ_G0028195.1 mouse_genomes_project 4 142640794 142754270 - MGP_CASTEiJ_P0069234 Prdm2 protein_coding protein_coding MGP_CASTEiJ_T0069235.1 MGP_CASTEiJ_G0028195.1 mouse_genomes_project 4 142697483 142734027 - MGP_CASTEiJ_P0069235 Prdm2 protein_coding protein_coding MGP_CASTEiJ_T0069236.1 MGP_CASTEiJ_G0028195.1 mouse_genomes_project 4 142697507 142754274 - MGP_CASTEiJ_P0069236 Prdm2 protein_coding protein_coding MGP_CASTEiJ_T0069237.1 MGP_CASTEiJ_G0028195.1 mouse_genomes_project 4 142717185 142754554 - Prdm2 protein_coding processed_transcript MGP_CASTEiJ_T0067349.1 MGP_CASTEiJ_G0027785.1 mouse_genomes_project 4 115559646 115569027 + MGP_CASTEiJ_P0067349 Slc6a9 protein_coding protein_coding MGP_CASTEiJ_T0067350.1 MGP_CASTEiJ_G0027785.1 mouse_genomes_project 4 115559984 115600969 + MGP_CASTEiJ_P0067350 Slc6a9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067351.1 MGP_CASTEiJ_G0027785.1 mouse_genomes_project 4 115560029 115594042 + MGP_CASTEiJ_P0067351 Slc6a9 protein_coding protein_coding MGP_CASTEiJ_T0067352.1 MGP_CASTEiJ_G0027785.1 mouse_genomes_project 4 115560036 115594039 + MGP_CASTEiJ_P0067352 Slc6a9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067353.1 MGP_CASTEiJ_G0027785.1 mouse_genomes_project 4 115560089 115582939 + Slc6a9 protein_coding processed_transcript MGP_CASTEiJ_T0067354.1 MGP_CASTEiJ_G0027785.1 mouse_genomes_project 4 115575113 115589792 + MGP_CASTEiJ_P0067354 Slc6a9 protein_coding protein_coding MGP_CASTEiJ_T0067355.1 MGP_CASTEiJ_G0027785.1 mouse_genomes_project 4 115575119 115589792 + MGP_CASTEiJ_P0067355 Slc6a9 protein_coding protein_coding MGP_CASTEiJ_T0067356.1 MGP_CASTEiJ_G0027785.1 mouse_genomes_project 4 115575290 115594194 + MGP_CASTEiJ_P0067356 Slc6a9 protein_coding protein_coding MGP_CASTEiJ_T0067357.1 MGP_CASTEiJ_G0027785.1 mouse_genomes_project 4 115581260 115583195 + MGP_CASTEiJ_P0067357 Slc6a9 protein_coding protein_coding MGP_CASTEiJ_T0067358.1 MGP_CASTEiJ_G0027785.1 mouse_genomes_project 4 115581312 115581796 + Slc6a9 protein_coding processed_transcript MGP_CASTEiJ_T0067370.1 MGP_CASTEiJ_G0027785.1 mouse_genomes_project 4 115599854 115600971 + Slc6a9 protein_coding retained_intron MGP_CASTEiJ_T0007789.1 MGP_CASTEiJ_G0006378.1 mouse_genomes_project 4 130816006 130818350 + Snhg12 lincRNA lincRNA MGP_CASTEiJ_T0007790.1 MGP_CASTEiJ_G0006378.1 mouse_genomes_project 4 130816006 130817297 + Snhg12 lincRNA lincRNA MGP_CASTEiJ_T0007791.1 MGP_CASTEiJ_G0006378.1 mouse_genomes_project 4 130816006 130818352 + Snhg12 lincRNA lincRNA MGP_CASTEiJ_T0007792.1 MGP_CASTEiJ_G0006378.1 mouse_genomes_project 4 130816021 130818087 + Snhg12 lincRNA lincRNA MGP_CASTEiJ_T0007793.1 MGP_CASTEiJ_G0006378.1 mouse_genomes_project 4 130816953 130818352 + Snhg12 lincRNA lincRNA MGP_CASTEiJ_T0007794.1 MGP_CASTEiJ_G0006378.1 mouse_genomes_project 4 130817143 130818323 + Snhg12 lincRNA lincRNA MGP_CASTEiJ_T0007795.1 MGP_CASTEiJ_G0006378.1 mouse_genomes_project 4 130817512 130818352 + Snhg12 lincRNA lincRNA MGP_CASTEiJ_T0067729.1 MGP_CASTEiJ_G0027879.1 mouse_genomes_project 4 122737273 122752485 - MGP_CASTEiJ_P0067729 Utp11l protein_coding protein_coding MGP_CASTEiJ_T0067730.1 MGP_CASTEiJ_G0027879.1 mouse_genomes_project 4 122737960 122752419 - Utp11l protein_coding processed_transcript MGP_CASTEiJ_T0067731.1 MGP_CASTEiJ_G0027879.1 mouse_genomes_project 4 122737963 122752450 - MGP_CASTEiJ_P0067731 Utp11l protein_coding unknown_likely_coding MGP_CASTEiJ_T0011255.1 MGP_CASTEiJ_G0009443.1 mouse_genomes_project 4 142896170 142896478 + Gm26313 misc_RNA misc_RNA MGP_CASTEiJ_T0013953.1 MGP_CASTEiJ_G0012116.1 mouse_genomes_project 4 7721036 7721318 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017288.1 MGP_CASTEiJ_G0014851.1 mouse_genomes_project 4 15214882 15683178 + processed_transcript processed_transcript MGP_CASTEiJ_T0069837.1 MGP_CASTEiJ_G0028316.1 mouse_genomes_project 4 154620760 154636113 - MGP_CASTEiJ_P0069837 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067637.1 MGP_CASTEiJ_G0027850.1 mouse_genomes_project 4 119073874 119077450 - MGP_CASTEiJ_P0067637 Tmco2 protein_coding protein_coding MGP_CASTEiJ_T0014224.1 MGP_CASTEiJ_G0012387.1 mouse_genomes_project 4 106321208 106321516 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068387.1 MGP_CASTEiJ_G0028006.1 mouse_genomes_project 4 131262244 131269918 - MGP_CASTEiJ_P0068387 Xkr8 protein_coding protein_coding MGP_CASTEiJ_T0068388.1 MGP_CASTEiJ_G0028006.1 mouse_genomes_project 4 131265859 131269900 - Xkr8 protein_coding processed_transcript MGP_CASTEiJ_T0068389.1 MGP_CASTEiJ_G0028006.1 mouse_genomes_project 4 131268279 131269855 - Xkr8 protein_coding processed_transcript MGP_CASTEiJ_T0014040.1 MGP_CASTEiJ_G0012203.1 mouse_genomes_project 4 34704703 34705172 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065692.1 MGP_CASTEiJ_G0027428.1 mouse_genomes_project 4 49343419 49357727 + MGP_CASTEiJ_P0065692 protein_coding protein_coding MGP_CASTEiJ_T0065693.1 MGP_CASTEiJ_G0027428.1 mouse_genomes_project 4 49343419 49357383 + MGP_CASTEiJ_P0065693 protein_coding protein_coding MGP_CASTEiJ_T0067071.1 MGP_CASTEiJ_G0027729.1 mouse_genomes_project 4 112800542 112828605 - MGP_CASTEiJ_P0067071 Cyp4x1 protein_coding protein_coding MGP_CASTEiJ_T0099855.1 MGP_CASTEiJ_G0036768.1 mouse_genomes_project 4 155814785 155814886 - Gm25982 snRNA snRNA MGP_CASTEiJ_T0066542.1 MGP_CASTEiJ_G0027631.1 mouse_genomes_project 4 99682271 99689911 + MGP_CASTEiJ_P0066542 Gm12789 protein_coding protein_coding MGP_CASTEiJ_T0066543.1 MGP_CASTEiJ_G0027631.1 mouse_genomes_project 4 99685801 99688942 + Gm12789 protein_coding processed_transcript MGP_CASTEiJ_T0066544.1 MGP_CASTEiJ_G0027631.1 mouse_genomes_project 4 99687976 99689872 + MGP_CASTEiJ_P0066544 Gm12789 protein_coding protein_coding MGP_CASTEiJ_T0067451.1 MGP_CASTEiJ_G0027803.1 mouse_genomes_project 4 116322874 116397209 - MGP_CASTEiJ_P0067451 Cfap57 protein_coding unknown_likely_coding MGP_CASTEiJ_T0004388.1 MGP_CASTEiJ_G0003821.1 mouse_genomes_project 4 115706581 115726984 + 9530034E10Rik antisense antisense MGP_CASTEiJ_T0014216.1 MGP_CASTEiJ_G0012379.1 mouse_genomes_project 4 103973960 103975628 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014031.1 MGP_CASTEiJ_G0012194.1 mouse_genomes_project 4 31740402 31740856 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007775.1 MGP_CASTEiJ_G0006367.1 mouse_genomes_project 4 128439562 128442739 + 1700003M07Rik lincRNA lincRNA MGP_CASTEiJ_T0007776.1 MGP_CASTEiJ_G0006367.1 mouse_genomes_project 4 128439988 128442876 + 1700003M07Rik lincRNA lincRNA MGP_CASTEiJ_T0004436.1 MGP_CASTEiJ_G0003860.1 mouse_genomes_project 4 139420917 139422676 + Gm13029 antisense antisense MGP_CASTEiJ_T0014293.1 MGP_CASTEiJ_G0012456.1 mouse_genomes_project 4 127794533 127794869 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065211.1 MGP_CASTEiJ_G0027335.1 mouse_genomes_project 4 40643499 40651899 - Fancg protein_coding retained_intron MGP_CASTEiJ_T0065212.1 MGP_CASTEiJ_G0027335.1 mouse_genomes_project 4 40643499 40651766 - MGP_CASTEiJ_P0065212 Fancg protein_coding protein_coding MGP_CASTEiJ_T0065213.1 MGP_CASTEiJ_G0027335.1 mouse_genomes_project 4 40644077 40645090 - Fancg protein_coding retained_intron MGP_CASTEiJ_T0065214.1 MGP_CASTEiJ_G0027335.1 mouse_genomes_project 4 40644166 40647948 - Fancg protein_coding processed_transcript MGP_CASTEiJ_T0065215.1 MGP_CASTEiJ_G0027335.1 mouse_genomes_project 4 40644415 40647993 - Fancg protein_coding processed_transcript MGP_CASTEiJ_T0065216.1 MGP_CASTEiJ_G0027335.1 mouse_genomes_project 4 40645070 40648259 - Fancg protein_coding processed_transcript MGP_CASTEiJ_T0065217.1 MGP_CASTEiJ_G0027335.1 mouse_genomes_project 4 40646734 40650552 - Fancg protein_coding processed_transcript MGP_CASTEiJ_T0065218.1 MGP_CASTEiJ_G0027335.1 mouse_genomes_project 4 40650465 40651581 - Fancg protein_coding retained_intron MGP_CASTEiJ_T0065219.1 MGP_CASTEiJ_G0027335.1 mouse_genomes_project 4 40650556 40651633 - Fancg protein_coding retained_intron MGP_CASTEiJ_T0065220.1 MGP_CASTEiJ_G0027335.1 mouse_genomes_project 4 40651453 40651917 - Fancg protein_coding processed_transcript MGP_CASTEiJ_T0014138.1 MGP_CASTEiJ_G0012301.1 mouse_genomes_project 4 72951339 72952170 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004330.1 MGP_CASTEiJ_G0003779.1 mouse_genomes_project 4 51444701 51450873 + 4930522O17Rik antisense antisense MGP_CASTEiJ_T0067082.1 MGP_CASTEiJ_G0027736.1 mouse_genomes_project 4 113234377 113253164 - MGP_CASTEiJ_P0067082 Cyp4b1 protein_coding protein_coding MGP_CASTEiJ_T0067083.1 MGP_CASTEiJ_G0027736.1 mouse_genomes_project 4 113234377 113246035 - MGP_CASTEiJ_P0067083 Cyp4b1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067084.1 MGP_CASTEiJ_G0027736.1 mouse_genomes_project 4 113235257 113247506 - MGP_CASTEiJ_P0067084 Cyp4b1 protein_coding protein_coding MGP_CASTEiJ_T0067085.1 MGP_CASTEiJ_G0027736.1 mouse_genomes_project 4 113238645 113241567 - Cyp4b1 protein_coding retained_intron MGP_CASTEiJ_T0010337.1 MGP_CASTEiJ_G0008525.1 mouse_genomes_project 4 134225520 134225599 - Mir700 miRNA miRNA MGP_CASTEiJ_T0068430.1 MGP_CASTEiJ_G0028016.1 mouse_genomes_project 4 131821178 131823697 - MGP_CASTEiJ_P0068430 Gpr3 protein_coding protein_coding MGP_CASTEiJ_T0068431.1 MGP_CASTEiJ_G0028016.1 mouse_genomes_project 4 131822206 131824375 - MGP_CASTEiJ_P0068431 Gpr3 protein_coding protein_coding MGP_CASTEiJ_T0068432.1 MGP_CASTEiJ_G0028016.1 mouse_genomes_project 4 131822909 131824153 - MGP_CASTEiJ_P0068432 Gpr3 protein_coding protein_coding MGP_CASTEiJ_T0065412.1 MGP_CASTEiJ_G0027368.1 mouse_genomes_project 4 41710935 41712876 + MGP_CASTEiJ_P0065412 Ccin protein_coding protein_coding MGP_CASTEiJ_T0014090.1 MGP_CASTEiJ_G0012253.1 mouse_genomes_project 4 53355467 53355821 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014047.1 MGP_CASTEiJ_G0012210.1 mouse_genomes_project 4 37427434 37428122 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065756.1 MGP_CASTEiJ_G0027448.1 mouse_genomes_project 4 55069693 55071206 + MGP_CASTEiJ_P0065756 Actl7a protein_coding protein_coding MGP_CASTEiJ_T0068703.1 MGP_CASTEiJ_G0028072.1 mouse_genomes_project 4 134221274 134244754 - MGP_CASTEiJ_P0068703 Rcan3 protein_coding protein_coding MGP_CASTEiJ_T0068704.1 MGP_CASTEiJ_G0028072.1 mouse_genomes_project 4 134221274 134236268 - MGP_CASTEiJ_P0068704 Rcan3 protein_coding protein_coding MGP_CASTEiJ_T0068705.1 MGP_CASTEiJ_G0028072.1 mouse_genomes_project 4 134227406 134244724 - MGP_CASTEiJ_P0068705 Rcan3 protein_coding protein_coding MGP_CASTEiJ_T0067073.1 MGP_CASTEiJ_G0027731.1 mouse_genomes_project 4 113055646 113065605 - MGP_CASTEiJ_P0067073 Cyp4a14 protein_coding protein_coding MGP_CASTEiJ_T0067074.1 MGP_CASTEiJ_G0027731.1 mouse_genomes_project 4 113063529 113065603 - Cyp4a14 protein_coding processed_transcript MGP_CASTEiJ_T0098938.1 MGP_CASTEiJ_G0035862.1 mouse_genomes_project 4 29437395 29451487 + Bach2it1 sense_intronic sense_intronic MGP_CASTEiJ_T0067043.1 MGP_CASTEiJ_G0027720.1 mouse_genomes_project 4 111718087 111928177 + MGP_CASTEiJ_P0067043 protein_coding protein_coding MGP_CASTEiJ_T0067044.1 MGP_CASTEiJ_G0027720.1 mouse_genomes_project 4 111718087 111928177 + MGP_CASTEiJ_P0067044 protein_coding protein_coding MGP_CASTEiJ_T0004439.1 MGP_CASTEiJ_G0003863.1 mouse_genomes_project 4 140641003 140644113 - antisense antisense MGP_CASTEiJ_T0014123.1 MGP_CASTEiJ_G0012286.1 mouse_genomes_project 4 68977792 68978789 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017307.1 MGP_CASTEiJ_G0014865.1 mouse_genomes_project 4 60930521 61110491 + 8030451A03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017308.1 MGP_CASTEiJ_G0014865.1 mouse_genomes_project 4 60930610 61005709 + 8030451A03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017309.1 MGP_CASTEiJ_G0014865.1 mouse_genomes_project 4 60930627 60934059 + 8030451A03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017310.1 MGP_CASTEiJ_G0014865.1 mouse_genomes_project 4 61109121 61109515 + 8030451A03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0004334.1 MGP_CASTEiJ_G0003783.1 mouse_genomes_project 4 58960553 58967780 + Gm12910 antisense antisense MGP_CASTEiJ_T0068841.1 MGP_CASTEiJ_G0028106.1 mouse_genomes_project 4 135911794 135999284 - MGP_CASTEiJ_P0068841 Zbtb40 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068842.1 MGP_CASTEiJ_G0028106.1 mouse_genomes_project 4 135930907 135999283 - MGP_CASTEiJ_P0068842 Zbtb40 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068843.1 MGP_CASTEiJ_G0028106.1 mouse_genomes_project 4 135930910 135999180 - MGP_CASTEiJ_P0068843 Zbtb40 protein_coding protein_coding MGP_CASTEiJ_T0068844.1 MGP_CASTEiJ_G0028106.1 mouse_genomes_project 4 135965260 135999287 - Zbtb40 protein_coding retained_intron MGP_CASTEiJ_T0004415.1 MGP_CASTEiJ_G0003842.1 mouse_genomes_project 4 129187800 129188575 - Gm12970 antisense antisense MGP_CASTEiJ_T0067805.1 MGP_CASTEiJ_G0027897.1 mouse_genomes_project 4 124210846 124221175 + MGP_CASTEiJ_P0067805 Mrps15 protein_coding protein_coding MGP_CASTEiJ_T0067806.1 MGP_CASTEiJ_G0027897.1 mouse_genomes_project 4 124210898 124217606 + Mrps15 protein_coding processed_transcript MGP_CASTEiJ_T0067807.1 MGP_CASTEiJ_G0027897.1 mouse_genomes_project 4 124211155 124216126 + Mrps15 protein_coding processed_transcript MGP_CASTEiJ_T0068695.1 MGP_CASTEiJ_G0028071.1 mouse_genomes_project 4 134173879 134206942 - MGP_CASTEiJ_P0068695 Ncmap protein_coding protein_coding MGP_CASTEiJ_T0068696.1 MGP_CASTEiJ_G0028071.1 mouse_genomes_project 4 134173879 134206911 - MGP_CASTEiJ_P0068696 Ncmap protein_coding protein_coding MGP_CASTEiJ_T0068697.1 MGP_CASTEiJ_G0028071.1 mouse_genomes_project 4 134173879 134191391 - MGP_CASTEiJ_P0068697 Ncmap protein_coding protein_coding MGP_CASTEiJ_T0068698.1 MGP_CASTEiJ_G0028071.1 mouse_genomes_project 4 134173880 134191408 - MGP_CASTEiJ_P0068698 Ncmap protein_coding protein_coding MGP_CASTEiJ_T0068699.1 MGP_CASTEiJ_G0028071.1 mouse_genomes_project 4 134174757 134191381 - MGP_CASTEiJ_P0068699 Ncmap protein_coding protein_coding MGP_CASTEiJ_T0068700.1 MGP_CASTEiJ_G0028071.1 mouse_genomes_project 4 134175047 134179111 - Ncmap protein_coding processed_transcript MGP_CASTEiJ_T0068701.1 MGP_CASTEiJ_G0028071.1 mouse_genomes_project 4 134175182 134191408 - MGP_CASTEiJ_P0068701 Ncmap protein_coding protein_coding MGP_CASTEiJ_T0068702.1 MGP_CASTEiJ_G0028071.1 mouse_genomes_project 4 134176467 134206948 - MGP_CASTEiJ_P0068702 Ncmap protein_coding protein_coding MGP_CASTEiJ_T0068848.1 MGP_CASTEiJ_G0028109.1 mouse_genomes_project 4 136375665 136384971 - MGP_CASTEiJ_P0068848 Cela3a protein_coding protein_coding MGP_CASTEiJ_T0007653.1 MGP_CASTEiJ_G0006274.1 mouse_genomes_project 4 51460820 51469597 - AI427809 lincRNA lincRNA MGP_CASTEiJ_T0007654.1 MGP_CASTEiJ_G0006274.1 mouse_genomes_project 4 51461357 51461999 - AI427809 lincRNA lincRNA MGP_CASTEiJ_T0007655.1 MGP_CASTEiJ_G0006274.1 mouse_genomes_project 4 51461906 51464857 - AI427809 lincRNA lincRNA MGP_CASTEiJ_T0007656.1 MGP_CASTEiJ_G0006274.1 mouse_genomes_project 4 51462183 51463199 - AI427809 lincRNA lincRNA MGP_CASTEiJ_T0013938.1 MGP_CASTEiJ_G0012101.1 mouse_genomes_project 4 2605413 2606167 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007770.1 MGP_CASTEiJ_G0006365.1 mouse_genomes_project 4 127719144 127730377 + Gm26722 lincRNA lincRNA MGP_CASTEiJ_T0007754.1 MGP_CASTEiJ_G0006354.1 mouse_genomes_project 4 123337038 123350157 + 1700041M05Rik lincRNA lincRNA MGP_CASTEiJ_T0014119.1 MGP_CASTEiJ_G0012282.1 mouse_genomes_project 4 66737203 66737784 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070060.1 MGP_CASTEiJ_G0028353.1 mouse_genomes_project 4 155733652 155747776 + MGP_CASTEiJ_P0070060 protein_coding protein_coding MGP_CASTEiJ_T0070061.1 MGP_CASTEiJ_G0028353.1 mouse_genomes_project 4 155733652 155749668 + MGP_CASTEiJ_P0070061 protein_coding protein_coding MGP_CASTEiJ_T0070062.1 MGP_CASTEiJ_G0028353.1 mouse_genomes_project 4 155733671 155749668 + MGP_CASTEiJ_P0070062 protein_coding protein_coding MGP_CASTEiJ_T0070063.1 MGP_CASTEiJ_G0028353.1 mouse_genomes_project 4 155733682 155738914 + MGP_CASTEiJ_P0070063 protein_coding protein_coding MGP_CASTEiJ_T0070064.1 MGP_CASTEiJ_G0028353.1 mouse_genomes_project 4 155733685 155741345 + protein_coding processed_transcript MGP_CASTEiJ_T0070065.1 MGP_CASTEiJ_G0028353.1 mouse_genomes_project 4 155733690 155747776 + MGP_CASTEiJ_P0070065 protein_coding protein_coding MGP_CASTEiJ_T0070066.1 MGP_CASTEiJ_G0028353.1 mouse_genomes_project 4 155733731 155747163 + MGP_CASTEiJ_P0070066 protein_coding protein_coding MGP_CASTEiJ_T0070067.1 MGP_CASTEiJ_G0028353.1 mouse_genomes_project 4 155733813 155747631 + MGP_CASTEiJ_P0070067 protein_coding protein_coding MGP_CASTEiJ_T0070068.1 MGP_CASTEiJ_G0028353.1 mouse_genomes_project 4 155733821 155741512 + protein_coding retained_intron MGP_CASTEiJ_T0070069.1 MGP_CASTEiJ_G0028353.1 mouse_genomes_project 4 155733979 155747776 + MGP_CASTEiJ_P0070069 protein_coding protein_coding MGP_CASTEiJ_T0070070.1 MGP_CASTEiJ_G0028353.1 mouse_genomes_project 4 155733979 155747779 + MGP_CASTEiJ_P0070070 protein_coding protein_coding MGP_CASTEiJ_T0070071.1 MGP_CASTEiJ_G0028353.1 mouse_genomes_project 4 155744905 155746455 + protein_coding retained_intron MGP_CASTEiJ_T0070072.1 MGP_CASTEiJ_G0028353.1 mouse_genomes_project 4 155746063 155747549 + protein_coding processed_transcript MGP_CASTEiJ_T0017303.1 MGP_CASTEiJ_G0014862.1 mouse_genomes_project 4 50981475 50995328 + 4930552N02Rik processed_transcript processed_transcript MGP_CASTEiJ_T0067925.1 MGP_CASTEiJ_G0027920.1 mouse_genomes_project 4 125283396 125300370 - MGP_CASTEiJ_P0067925 Zmym1 protein_coding protein_coding MGP_CASTEiJ_T0067926.1 MGP_CASTEiJ_G0027920.1 mouse_genomes_project 4 125283895 125296142 - MGP_CASTEiJ_P0067926 Zmym1 protein_coding protein_coding MGP_CASTEiJ_T0067927.1 MGP_CASTEiJ_G0027920.1 mouse_genomes_project 4 125283944 125300278 - Zmym1 protein_coding processed_transcript MGP_CASTEiJ_T0067928.1 MGP_CASTEiJ_G0027920.1 mouse_genomes_project 4 125283944 125300342 - MGP_CASTEiJ_P0067928 Zmym1 protein_coding protein_coding MGP_CASTEiJ_T0067929.1 MGP_CASTEiJ_G0027920.1 mouse_genomes_project 4 125283944 125300369 - MGP_CASTEiJ_P0067929 Zmym1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067930.1 MGP_CASTEiJ_G0027920.1 mouse_genomes_project 4 125284967 125296037 - Zmym1 protein_coding processed_transcript MGP_CASTEiJ_T0067931.1 MGP_CASTEiJ_G0027920.1 mouse_genomes_project 4 125290523 125294727 - Zmym1 protein_coding processed_transcript MGP_CASTEiJ_T0067932.1 MGP_CASTEiJ_G0027920.1 mouse_genomes_project 4 125290562 125300304 - MGP_CASTEiJ_P0067932 Zmym1 protein_coding protein_coding MGP_CASTEiJ_T0068316.1 MGP_CASTEiJ_G0027993.1 mouse_genomes_project 4 130670341 130700335 - MGP_CASTEiJ_P0068316 protein_coding protein_coding MGP_CASTEiJ_T0007742.1 MGP_CASTEiJ_G0006346.1 mouse_genomes_project 4 116892543 116908540 - Gm12866 lincRNA lincRNA MGP_CASTEiJ_T0066970.1 MGP_CASTEiJ_G0027705.1 mouse_genomes_project 4 107714205 107722079 - MGP_CASTEiJ_P0066970 Cdkn2c protein_coding protein_coding MGP_CASTEiJ_T0066971.1 MGP_CASTEiJ_G0027705.1 mouse_genomes_project 4 107714205 107720262 - MGP_CASTEiJ_P0066971 Cdkn2c protein_coding protein_coding MGP_CASTEiJ_T0007737.1 MGP_CASTEiJ_G0006341.1 mouse_genomes_project 4 113395915 113399722 + Gm12847 lincRNA lincRNA MGP_CASTEiJ_T0070002.1 MGP_CASTEiJ_G0028344.1 mouse_genomes_project 4 155613018 155636886 + MGP_CASTEiJ_P0070002 Ccnl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070003.1 MGP_CASTEiJ_G0028344.1 mouse_genomes_project 4 155613018 155636886 + MGP_CASTEiJ_P0070003 Ccnl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070004.1 MGP_CASTEiJ_G0028344.1 mouse_genomes_project 4 155613018 155636886 + MGP_CASTEiJ_P0070004 Ccnl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070005.1 MGP_CASTEiJ_G0028344.1 mouse_genomes_project 4 155613095 155628816 + MGP_CASTEiJ_P0070005 Ccnl2 protein_coding protein_coding MGP_CASTEiJ_T0070006.1 MGP_CASTEiJ_G0028344.1 mouse_genomes_project 4 155613107 155628816 + Ccnl2 protein_coding retained_intron MGP_CASTEiJ_T0070007.1 MGP_CASTEiJ_G0028344.1 mouse_genomes_project 4 155613125 155626119 + Ccnl2 protein_coding retained_intron MGP_CASTEiJ_T0070008.1 MGP_CASTEiJ_G0028344.1 mouse_genomes_project 4 155613384 155616458 + Ccnl2 protein_coding retained_intron MGP_CASTEiJ_T0070009.1 MGP_CASTEiJ_G0028344.1 mouse_genomes_project 4 155614097 155628576 + MGP_CASTEiJ_P0070009 Ccnl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070010.1 MGP_CASTEiJ_G0028344.1 mouse_genomes_project 4 155621274 155628626 + MGP_CASTEiJ_P0070010 Ccnl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069324.1 MGP_CASTEiJ_G0028231.1 mouse_genomes_project 4 147204898 147220256 - MGP_CASTEiJ_P0069324 Agtrap protein_coding protein_coding MGP_CASTEiJ_T0069325.1 MGP_CASTEiJ_G0028231.1 mouse_genomes_project 4 147209701 147213939 - Agtrap protein_coding processed_transcript MGP_CASTEiJ_T0069326.1 MGP_CASTEiJ_G0028231.1 mouse_genomes_project 4 147213044 147220256 - Agtrap protein_coding retained_intron MGP_CASTEiJ_T0101031.1 MGP_CASTEiJ_G0037944.1 mouse_genomes_project 4 38057437 38057534 - Gm23338 snoRNA snoRNA MGP_CASTEiJ_T0101072.1 MGP_CASTEiJ_G0037985.1 mouse_genomes_project 4 114827620 114827689 - Gm22980 snoRNA snoRNA MGP_CASTEiJ_T0067114.1 MGP_CASTEiJ_G0027741.1 mouse_genomes_project 4 113467708 113471273 + MGP_CASTEiJ_P0067114 Kncn protein_coding protein_coding MGP_CASTEiJ_T0067115.1 MGP_CASTEiJ_G0027741.1 mouse_genomes_project 4 113469171 113472837 + Kncn protein_coding processed_transcript MGP_CASTEiJ_T0065941.1 MGP_CASTEiJ_G0027493.1 mouse_genomes_project 4 59372075 59400336 + MGP_CASTEiJ_P0065941 4933430I17Rik protein_coding protein_coding MGP_CASTEiJ_T0065942.1 MGP_CASTEiJ_G0027493.1 mouse_genomes_project 4 59372517 59400105 + MGP_CASTEiJ_P0065942 4933430I17Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0065943.1 MGP_CASTEiJ_G0027493.1 mouse_genomes_project 4 59391933 59402236 + MGP_CASTEiJ_P0065943 4933430I17Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0013954.1 MGP_CASTEiJ_G0012117.1 mouse_genomes_project 4 7733554 7734112 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011244.1 MGP_CASTEiJ_G0009432.1 mouse_genomes_project 4 95904696 95904806 + Gm24203 misc_RNA misc_RNA MGP_CASTEiJ_T0013943.1 MGP_CASTEiJ_G0012106.1 mouse_genomes_project 4 3597021 3597489 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068749.1 MGP_CASTEiJ_G0028084.1 mouse_genomes_project 4 134828731 134834941 + MGP_CASTEiJ_P0068749 Gale protein_coding protein_coding MGP_CASTEiJ_T0068750.1 MGP_CASTEiJ_G0028084.1 mouse_genomes_project 4 134828761 134830631 + MGP_CASTEiJ_P0068750 Gale protein_coding protein_coding MGP_CASTEiJ_T0068751.1 MGP_CASTEiJ_G0028084.1 mouse_genomes_project 4 134828764 134831867 + Gale protein_coding retained_intron MGP_CASTEiJ_T0068752.1 MGP_CASTEiJ_G0028084.1 mouse_genomes_project 4 134828821 134830621 + MGP_CASTEiJ_P0068752 Gale protein_coding protein_coding MGP_CASTEiJ_T0068753.1 MGP_CASTEiJ_G0028084.1 mouse_genomes_project 4 134830169 134834941 + MGP_CASTEiJ_P0068753 Gale protein_coding protein_coding MGP_CASTEiJ_T0068754.1 MGP_CASTEiJ_G0028084.1 mouse_genomes_project 4 134830199 134831921 + Gale protein_coding retained_intron MGP_CASTEiJ_T0068755.1 MGP_CASTEiJ_G0028084.1 mouse_genomes_project 4 134830620 134834466 + Gale protein_coding retained_intron MGP_CASTEiJ_T0065541.1 MGP_CASTEiJ_G0027389.1 mouse_genomes_project 4 43825470 43898019 + MGP_CASTEiJ_P0065541 Tdrd7 protein_coding protein_coding MGP_CASTEiJ_T0065542.1 MGP_CASTEiJ_G0027389.1 mouse_genomes_project 4 43832309 43898019 + MGP_CASTEiJ_P0065542 Tdrd7 protein_coding protein_coding MGP_CASTEiJ_T0065543.1 MGP_CASTEiJ_G0027389.1 mouse_genomes_project 4 43832910 43847613 + Tdrd7 protein_coding processed_transcript MGP_CASTEiJ_T0065544.1 MGP_CASTEiJ_G0027389.1 mouse_genomes_project 4 43850153 43867429 + Tdrd7 protein_coding processed_transcript MGP_CASTEiJ_T0065545.1 MGP_CASTEiJ_G0027389.1 mouse_genomes_project 4 43887118 43898019 + Tdrd7 protein_coding processed_transcript MGP_CASTEiJ_T0001369.1 MGP_CASTEiJ_G0001299.1 mouse_genomes_project 4 130577693 130584905 - TEC TEC MGP_CASTEiJ_T0068606.1 MGP_CASTEiJ_G0028053.1 mouse_genomes_project 4 133058497 133067965 + MGP_CASTEiJ_P0068606 Slc30a2 protein_coding protein_coding MGP_CASTEiJ_T0068607.1 MGP_CASTEiJ_G0028053.1 mouse_genomes_project 4 133058535 133069768 + MGP_CASTEiJ_P0068607 Slc30a2 protein_coding protein_coding MGP_CASTEiJ_T0099833.1 MGP_CASTEiJ_G0036746.1 mouse_genomes_project 4 128371294 128371446 + Gm23845 snRNA snRNA MGP_CASTEiJ_T0013986.1 MGP_CASTEiJ_G0012149.1 mouse_genomes_project 4 18961366 18961765 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101084.1 MGP_CASTEiJ_G0037997.1 mouse_genomes_project 4 129118083 129118156 + Snord85 snoRNA snoRNA MGP_CASTEiJ_T0101042.1 MGP_CASTEiJ_G0037955.1 mouse_genomes_project 4 52115769 52115894 + Gm23745 snoRNA snoRNA MGP_CASTEiJ_T0069616.1 MGP_CASTEiJ_G0028281.1 mouse_genomes_project 4 151500556 151506830 - MGP_CASTEiJ_P0069616 Phf13 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064881.1 MGP_CASTEiJ_G0027260.1 mouse_genomes_project 4 25804932 25968299 + MGP_CASTEiJ_P0064881 Epha7 protein_coding protein_coding MGP_CASTEiJ_T0064882.1 MGP_CASTEiJ_G0027260.1 mouse_genomes_project 4 25804932 25948277 + MGP_CASTEiJ_P0064882 Epha7 protein_coding protein_coding MGP_CASTEiJ_T0064883.1 MGP_CASTEiJ_G0027260.1 mouse_genomes_project 4 25804953 25967616 + MGP_CASTEiJ_P0064883 Epha7 protein_coding protein_coding MGP_CASTEiJ_T0064884.1 MGP_CASTEiJ_G0027260.1 mouse_genomes_project 4 25805051 25968299 + MGP_CASTEiJ_P0064884 Epha7 protein_coding protein_coding MGP_CASTEiJ_T0064885.1 MGP_CASTEiJ_G0027260.1 mouse_genomes_project 4 25805083 26044791 + MGP_CASTEiJ_P0064885 Epha7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064886.1 MGP_CASTEiJ_G0027260.1 mouse_genomes_project 4 25805127 25866966 + Epha7 protein_coding processed_transcript MGP_CASTEiJ_T0064887.1 MGP_CASTEiJ_G0027260.1 mouse_genomes_project 4 25807232 25812808 + Epha7 protein_coding processed_transcript MGP_CASTEiJ_T0064888.1 MGP_CASTEiJ_G0027260.1 mouse_genomes_project 4 25865030 25944723 + Epha7 protein_coding processed_transcript MGP_CASTEiJ_T0064889.1 MGP_CASTEiJ_G0027260.1 mouse_genomes_project 4 25865113 25947564 + Epha7 protein_coding processed_transcript MGP_CASTEiJ_T0014336.1 MGP_CASTEiJ_G0012499.1 mouse_genomes_project 4 149123037 149123594 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067889.1 MGP_CASTEiJ_G0027913.1 mouse_genomes_project 4 124821426 124825857 + MGP_CASTEiJ_P0067889 5730409E04Rik protein_coding protein_coding MGP_CASTEiJ_T0067890.1 MGP_CASTEiJ_G0027913.1 mouse_genomes_project 4 124821462 124825857 + MGP_CASTEiJ_P0067890 5730409E04Rik protein_coding protein_coding MGP_CASTEiJ_T0014037.1 MGP_CASTEiJ_G0012200.1 mouse_genomes_project 4 32813520 32814088 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069328.1 MGP_CASTEiJ_G0028233.1 mouse_genomes_project 4 147266495 147278159 + Mad2l2 protein_coding processed_transcript MGP_CASTEiJ_T0069329.1 MGP_CASTEiJ_G0028233.1 mouse_genomes_project 4 147277284 147283071 + MGP_CASTEiJ_P0069329 Mad2l2 protein_coding protein_coding MGP_CASTEiJ_T0069330.1 MGP_CASTEiJ_G0028233.1 mouse_genomes_project 4 147277550 147282508 + MGP_CASTEiJ_P0069330 Mad2l2 protein_coding protein_coding MGP_CASTEiJ_T0069331.1 MGP_CASTEiJ_G0028233.1 mouse_genomes_project 4 147278091 147282507 + MGP_CASTEiJ_P0069331 Mad2l2 protein_coding protein_coding MGP_CASTEiJ_T0069332.1 MGP_CASTEiJ_G0028233.1 mouse_genomes_project 4 147278129 147280842 + Mad2l2 protein_coding retained_intron MGP_CASTEiJ_T0069333.1 MGP_CASTEiJ_G0028233.1 mouse_genomes_project 4 147282176 147282838 + Mad2l2 protein_coding retained_intron MGP_CASTEiJ_T0013950.1 MGP_CASTEiJ_G0012113.1 mouse_genomes_project 4 7150054 7150345 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004475.1 MGP_CASTEiJ_G0003889.1 mouse_genomes_project 4 151962033 151962500 + Gm16333 antisense antisense MGP_CASTEiJ_T0065011.1 MGP_CASTEiJ_G0027288.1 mouse_genomes_project 4 32315842 32316184 - MGP_CASTEiJ_P0065011 protein_coding protein_coding MGP_CASTEiJ_T0064778.1 MGP_CASTEiJ_G0027236.1 mouse_genomes_project 4 16439177 16488785 + MGP_CASTEiJ_P0064778 Gm12353 protein_coding protein_coding MGP_CASTEiJ_T0067341.1 MGP_CASTEiJ_G0027782.1 mouse_genomes_project 4 115383707 115391263 - Dmap1 protein_coding processed_transcript MGP_CASTEiJ_T0067342.1 MGP_CASTEiJ_G0027782.1 mouse_genomes_project 4 115383712 115390994 - Dmap1 protein_coding processed_transcript MGP_CASTEiJ_T0067343.1 MGP_CASTEiJ_G0027782.1 mouse_genomes_project 4 115383761 115391259 - MGP_CASTEiJ_P0067343 Dmap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067344.1 MGP_CASTEiJ_G0027782.1 mouse_genomes_project 4 115389927 115391231 - Dmap1 protein_coding processed_transcript MGP_CASTEiJ_T0067345.1 MGP_CASTEiJ_G0027782.1 mouse_genomes_project 4 115390312 115391221 - Dmap1 protein_coding processed_transcript MGP_CASTEiJ_T0067346.1 MGP_CASTEiJ_G0027782.1 mouse_genomes_project 4 115390597 115391281 - Dmap1 protein_coding processed_transcript MGP_CASTEiJ_T0102317.1 MGP_CASTEiJ_G0039042.1 mouse_genomes_project 4 110214431 110230368 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0064738.1 MGP_CASTEiJ_G0027222.1 mouse_genomes_project 4 11483978 11500859 - MGP_CASTEiJ_P0064738 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064739.1 MGP_CASTEiJ_G0027222.1 mouse_genomes_project 4 11484281 11500929 - MGP_CASTEiJ_P0064739 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064740.1 MGP_CASTEiJ_G0027222.1 mouse_genomes_project 4 11492116 11500995 - MGP_CASTEiJ_P0064740 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066303.1 MGP_CASTEiJ_G0027577.1 mouse_genomes_project 4 87198954 87216167 + Dmrta1 protein_coding processed_transcript MGP_CASTEiJ_T0066304.1 MGP_CASTEiJ_G0027577.1 mouse_genomes_project 4 87212461 87219020 + MGP_CASTEiJ_P0066304 Dmrta1 protein_coding protein_coding MGP_CASTEiJ_T0101077.1 MGP_CASTEiJ_G0037990.1 mouse_genomes_project 4 116813089 116813214 + Gm24352 snoRNA snoRNA MGP_CASTEiJ_T0004303.1 MGP_CASTEiJ_G0003757.1 mouse_genomes_project 4 17192408 17196520 + Gm11872 antisense antisense MGP_CASTEiJ_T0068658.1 MGP_CASTEiJ_G0028066.1 mouse_genomes_project 4 133685233 133689312 + Rsrp1 protein_coding retained_intron MGP_CASTEiJ_T0068659.1 MGP_CASTEiJ_G0028066.1 mouse_genomes_project 4 133685233 133689312 + MGP_CASTEiJ_P0068659 Rsrp1 protein_coding protein_coding MGP_CASTEiJ_T0068660.1 MGP_CASTEiJ_G0028066.1 mouse_genomes_project 4 133685234 133687068 + Rsrp1 protein_coding processed_transcript MGP_CASTEiJ_T0068661.1 MGP_CASTEiJ_G0028066.1 mouse_genomes_project 4 133685267 133686978 + Rsrp1 protein_coding processed_transcript MGP_CASTEiJ_T0068662.1 MGP_CASTEiJ_G0028066.1 mouse_genomes_project 4 133685286 133689013 + Rsrp1 protein_coding processed_transcript MGP_CASTEiJ_T0068663.1 MGP_CASTEiJ_G0028066.1 mouse_genomes_project 4 133686107 133689013 + Rsrp1 protein_coding processed_transcript MGP_CASTEiJ_T0068664.1 MGP_CASTEiJ_G0028066.1 mouse_genomes_project 4 133686357 133687000 + Rsrp1 protein_coding processed_transcript MGP_CASTEiJ_T0068665.1 MGP_CASTEiJ_G0028066.1 mouse_genomes_project 4 133687090 133688594 + Rsrp1 protein_coding processed_transcript MGP_CASTEiJ_T0066049.1 MGP_CASTEiJ_G0027521.1 mouse_genomes_project 4 68872048 68874367 - MGP_CASTEiJ_P0066049 Gm11232 protein_coding protein_coding MGP_CASTEiJ_T0064681.1 MGP_CASTEiJ_G0027207.1 mouse_genomes_project 4 8172456 8210421 + Rad54b protein_coding processed_transcript MGP_CASTEiJ_T0064682.1 MGP_CASTEiJ_G0027207.1 mouse_genomes_project 4 8172476 8202052 + MGP_CASTEiJ_P0064682 Rad54b protein_coding protein_coding MGP_CASTEiJ_T0064683.1 MGP_CASTEiJ_G0027207.1 mouse_genomes_project 4 8172483 8194046 + MGP_CASTEiJ_P0064683 Rad54b protein_coding protein_coding MGP_CASTEiJ_T0064684.1 MGP_CASTEiJ_G0027207.1 mouse_genomes_project 4 8172506 8233050 + MGP_CASTEiJ_P0064684 Rad54b protein_coding protein_coding MGP_CASTEiJ_T0064685.1 MGP_CASTEiJ_G0027207.1 mouse_genomes_project 4 8191727 8212564 + Rad54b protein_coding processed_transcript MGP_CASTEiJ_T0064687.1 MGP_CASTEiJ_G0027207.1 mouse_genomes_project 4 8212663 8222854 + MGP_CASTEiJ_P0064687 Rad54b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064688.1 MGP_CASTEiJ_G0027207.1 mouse_genomes_project 4 8226088 8227489 + Rad54b protein_coding retained_intron MGP_CASTEiJ_T0007836.1 MGP_CASTEiJ_G0006415.1 mouse_genomes_project 4 154366180 154366799 - Gm27202 lincRNA lincRNA MGP_CASTEiJ_T0069434.1 MGP_CASTEiJ_G0028251.1 mouse_genomes_project 4 148391795 148410783 - MGP_CASTEiJ_P0069434 Pgd protein_coding protein_coding MGP_CASTEiJ_T0069435.1 MGP_CASTEiJ_G0028251.1 mouse_genomes_project 4 148399217 148404029 - Pgd protein_coding retained_intron MGP_CASTEiJ_T0069436.1 MGP_CASTEiJ_G0028251.1 mouse_genomes_project 4 148403956 148410847 - Pgd protein_coding retained_intron MGP_CASTEiJ_T0069437.1 MGP_CASTEiJ_G0028251.1 mouse_genomes_project 4 148404322 148405702 - Pgd protein_coding retained_intron MGP_CASTEiJ_T0069438.1 MGP_CASTEiJ_G0028251.1 mouse_genomes_project 4 148405433 148410736 - Pgd protein_coding retained_intron MGP_CASTEiJ_T0007664.1 MGP_CASTEiJ_G0006281.1 mouse_genomes_project 4 53882745 53915241 + Gm12506 lincRNA lincRNA MGP_CASTEiJ_T0064689.1 MGP_CASTEiJ_G0027209.1 mouse_genomes_project 4 8337563 8347959 + MGP_CASTEiJ_P0064689 Gem protein_coding protein_coding MGP_CASTEiJ_T0064690.1 MGP_CASTEiJ_G0027209.1 mouse_genomes_project 4 8338913 8347959 + MGP_CASTEiJ_P0064690 Gem protein_coding protein_coding MGP_CASTEiJ_T0014333.1 MGP_CASTEiJ_G0012496.1 mouse_genomes_project 4 148324154 148324474 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004294.1 MGP_CASTEiJ_G0003750.1 mouse_genomes_project 4 6012727 6027850 - Gm11817 antisense antisense MGP_CASTEiJ_T0014187.1 MGP_CASTEiJ_G0012350.1 mouse_genomes_project 4 92641258 92644995 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004383.1 MGP_CASTEiJ_G0003817.1 mouse_genomes_project 4 114665118 114665965 - 1700021J08Rik antisense antisense MGP_CASTEiJ_T0017338.1 MGP_CASTEiJ_G0014886.1 mouse_genomes_project 4 114892160 114892609 - 1700012C08Rik processed_transcript processed_transcript MGP_CASTEiJ_T0067599.1 MGP_CASTEiJ_G0027840.1 mouse_genomes_project 4 118520481 118547716 + MGP_CASTEiJ_P0067599 Gm8439 protein_coding protein_coding MGP_CASTEiJ_T0069979.1 MGP_CASTEiJ_G0028339.1 mouse_genomes_project 4 155532696 155555018 - MGP_CASTEiJ_P0069979 Atad3a protein_coding unknown_likely_coding MGP_CASTEiJ_T0069980.1 MGP_CASTEiJ_G0028339.1 mouse_genomes_project 4 155532696 155555018 - MGP_CASTEiJ_P0069980 Atad3a protein_coding unknown_likely_coding MGP_CASTEiJ_T0069981.1 MGP_CASTEiJ_G0028339.1 mouse_genomes_project 4 155532696 155554981 - MGP_CASTEiJ_P0069981 Atad3a protein_coding unknown_likely_coding MGP_CASTEiJ_T0069982.1 MGP_CASTEiJ_G0028339.1 mouse_genomes_project 4 155532700 155555071 - MGP_CASTEiJ_P0069982 Atad3a protein_coding protein_coding MGP_CASTEiJ_T0069983.1 MGP_CASTEiJ_G0028339.1 mouse_genomes_project 4 155532893 155538403 - Atad3a protein_coding retained_intron MGP_CASTEiJ_T0069984.1 MGP_CASTEiJ_G0028339.1 mouse_genomes_project 4 155538121 155543401 - Atad3a protein_coding retained_intron MGP_CASTEiJ_T0069985.1 MGP_CASTEiJ_G0028339.1 mouse_genomes_project 4 155539252 155543269 - Atad3a protein_coding retained_intron MGP_CASTEiJ_T0069986.1 MGP_CASTEiJ_G0028339.1 mouse_genomes_project 4 155544285 155550088 - MGP_CASTEiJ_P0069986 Atad3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069987.1 MGP_CASTEiJ_G0028339.1 mouse_genomes_project 4 155544589 155548786 - MGP_CASTEiJ_P0069987 Atad3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069988.1 MGP_CASTEiJ_G0028339.1 mouse_genomes_project 4 155545568 155554906 - MGP_CASTEiJ_P0069988 Atad3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069989.1 MGP_CASTEiJ_G0028339.1 mouse_genomes_project 4 155547646 155555046 - MGP_CASTEiJ_P0069989 Atad3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069990.1 MGP_CASTEiJ_G0028339.1 mouse_genomes_project 4 155549849 155555065 - Atad3a protein_coding retained_intron MGP_CASTEiJ_T0067547.1 MGP_CASTEiJ_G0027829.1 mouse_genomes_project 4 117330140 117358180 - MGP_CASTEiJ_P0067547 Rimkla protein_coding protein_coding MGP_CASTEiJ_T0067548.1 MGP_CASTEiJ_G0027829.1 mouse_genomes_project 4 117332587 117358054 - MGP_CASTEiJ_P0067548 Rimkla protein_coding unknown_likely_coding MGP_CASTEiJ_T0067549.1 MGP_CASTEiJ_G0027829.1 mouse_genomes_project 4 117340175 117358067 - Rimkla protein_coding processed_transcript MGP_CASTEiJ_T0068210.1 MGP_CASTEiJ_G0027972.1 mouse_genomes_project 4 128635371 128644422 - MGP_CASTEiJ_P0068210 Hcrtr1 protein_coding protein_coding MGP_CASTEiJ_T0068211.1 MGP_CASTEiJ_G0027972.1 mouse_genomes_project 4 128635371 128643614 - MGP_CASTEiJ_P0068211 Hcrtr1 protein_coding protein_coding MGP_CASTEiJ_T0068212.1 MGP_CASTEiJ_G0027972.1 mouse_genomes_project 4 128635371 128644225 - MGP_CASTEiJ_P0068212 Hcrtr1 protein_coding protein_coding MGP_CASTEiJ_T0068213.1 MGP_CASTEiJ_G0027972.1 mouse_genomes_project 4 128635767 128644124 - MGP_CASTEiJ_P0068213 Hcrtr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068214.1 MGP_CASTEiJ_G0027972.1 mouse_genomes_project 4 128635995 128642765 - MGP_CASTEiJ_P0068214 Hcrtr1 protein_coding protein_coding MGP_CASTEiJ_T0064912.1 MGP_CASTEiJ_G0027265.1 mouse_genomes_project 4 29873014 29996319 + MGP_CASTEiJ_P0064912 Mdn1 protein_coding protein_coding MGP_CASTEiJ_T0064913.1 MGP_CASTEiJ_G0027265.1 mouse_genomes_project 4 29873014 29996309 + MGP_CASTEiJ_P0064913 Mdn1 protein_coding protein_coding MGP_CASTEiJ_T0064914.1 MGP_CASTEiJ_G0027265.1 mouse_genomes_project 4 29873078 29880134 + Mdn1 protein_coding processed_transcript MGP_CASTEiJ_T0064915.1 MGP_CASTEiJ_G0027265.1 mouse_genomes_project 4 29873116 29912095 + MGP_CASTEiJ_P0064915 Mdn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064916.1 MGP_CASTEiJ_G0027265.1 mouse_genomes_project 4 29873116 29912095 + MGP_CASTEiJ_P0064916 Mdn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064917.1 MGP_CASTEiJ_G0027265.1 mouse_genomes_project 4 29887506 29895525 + Mdn1 protein_coding processed_transcript MGP_CASTEiJ_T0064918.1 MGP_CASTEiJ_G0027265.1 mouse_genomes_project 4 29912137 29913184 + Mdn1 protein_coding processed_transcript MGP_CASTEiJ_T0064919.1 MGP_CASTEiJ_G0027265.1 mouse_genomes_project 4 29912206 29995394 + MGP_CASTEiJ_P0064919 Mdn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064920.1 MGP_CASTEiJ_G0027265.1 mouse_genomes_project 4 29922345 29996300 + Mdn1 protein_coding processed_transcript MGP_CASTEiJ_T0064921.1 MGP_CASTEiJ_G0027265.1 mouse_genomes_project 4 29940564 29949155 + Mdn1 protein_coding processed_transcript MGP_CASTEiJ_T0064922.1 MGP_CASTEiJ_G0027265.1 mouse_genomes_project 4 29943558 29945921 + Mdn1 protein_coding processed_transcript MGP_CASTEiJ_T0064923.1 MGP_CASTEiJ_G0027265.1 mouse_genomes_project 4 29968024 29973195 + Mdn1 protein_coding processed_transcript MGP_CASTEiJ_T0064924.1 MGP_CASTEiJ_G0027265.1 mouse_genomes_project 4 29968024 29971110 + Mdn1 protein_coding processed_transcript MGP_CASTEiJ_T0064925.1 MGP_CASTEiJ_G0027265.1 mouse_genomes_project 4 29983421 29985548 + Mdn1 protein_coding processed_transcript MGP_CASTEiJ_T0014116.1 MGP_CASTEiJ_G0012279.1 mouse_genomes_project 4 64469409 64470035 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068409.1 MGP_CASTEiJ_G0028013.1 mouse_genomes_project 4 131553528 131563758 + Fgr protein_coding processed_transcript MGP_CASTEiJ_T0068410.1 MGP_CASTEiJ_G0028013.1 mouse_genomes_project 4 131553685 131586145 + MGP_CASTEiJ_P0068410 Fgr protein_coding unknown_likely_coding MGP_CASTEiJ_T0068411.1 MGP_CASTEiJ_G0028013.1 mouse_genomes_project 4 131556561 131585081 + Fgr protein_coding processed_transcript MGP_CASTEiJ_T0067385.1 MGP_CASTEiJ_G0027790.1 mouse_genomes_project 4 115620055 115626230 - Ipo13 protein_coding processed_transcript MGP_CASTEiJ_T0067386.1 MGP_CASTEiJ_G0027790.1 mouse_genomes_project 4 115620055 115640246 - MGP_CASTEiJ_P0067386 Ipo13 protein_coding protein_coding MGP_CASTEiJ_T0067387.1 MGP_CASTEiJ_G0027790.1 mouse_genomes_project 4 115620196 115620684 - Ipo13 protein_coding processed_transcript MGP_CASTEiJ_T0067388.1 MGP_CASTEiJ_G0027790.1 mouse_genomes_project 4 115620461 115621429 - Ipo13 protein_coding processed_transcript MGP_CASTEiJ_T0067389.1 MGP_CASTEiJ_G0027790.1 mouse_genomes_project 4 115620909 115621448 - Ipo13 protein_coding processed_transcript MGP_CASTEiJ_T0067390.1 MGP_CASTEiJ_G0027790.1 mouse_genomes_project 4 115626522 115629412 - Ipo13 protein_coding processed_transcript MGP_CASTEiJ_T0014048.1 MGP_CASTEiJ_G0012211.1 mouse_genomes_project 4 37469489 37470444 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004412.1 MGP_CASTEiJ_G0003841.1 mouse_genomes_project 4 128514649 128541916 - Gm12963 antisense antisense MGP_CASTEiJ_T0004413.1 MGP_CASTEiJ_G0003841.1 mouse_genomes_project 4 128517153 128541916 - Gm12963 antisense antisense MGP_CASTEiJ_T0004414.1 MGP_CASTEiJ_G0003841.1 mouse_genomes_project 4 128517157 128518778 - Gm12963 antisense antisense MGP_CASTEiJ_T0066374.1 MGP_CASTEiJ_G0027592.1 mouse_genomes_project 4 93582422 93651530 + MGP_CASTEiJ_P0066374 protein_coding protein_coding MGP_CASTEiJ_T0066375.1 MGP_CASTEiJ_G0027592.1 mouse_genomes_project 4 93582545 93639186 + protein_coding processed_transcript MGP_CASTEiJ_T0066376.1 MGP_CASTEiJ_G0027592.1 mouse_genomes_project 4 93582551 93622979 + MGP_CASTEiJ_P0066376 protein_coding protein_coding MGP_CASTEiJ_T0066377.1 MGP_CASTEiJ_G0027592.1 mouse_genomes_project 4 93582647 93637145 + MGP_CASTEiJ_P0066377 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066378.1 MGP_CASTEiJ_G0027592.1 mouse_genomes_project 4 93589524 93648469 + protein_coding processed_transcript MGP_CASTEiJ_T0066379.1 MGP_CASTEiJ_G0027592.1 mouse_genomes_project 4 93625854 93633247 + protein_coding processed_transcript MGP_CASTEiJ_T0066380.1 MGP_CASTEiJ_G0027592.1 mouse_genomes_project 4 93627028 93633638 + protein_coding processed_transcript MGP_CASTEiJ_T0066381.1 MGP_CASTEiJ_G0027592.1 mouse_genomes_project 4 93628140 93648611 + protein_coding processed_transcript MGP_CASTEiJ_T0066382.1 MGP_CASTEiJ_G0027592.1 mouse_genomes_project 4 93633080 93662326 + MGP_CASTEiJ_P0066382 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066383.1 MGP_CASTEiJ_G0027592.1 mouse_genomes_project 4 93633080 93662326 + MGP_CASTEiJ_P0066383 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066384.1 MGP_CASTEiJ_G0027592.1 mouse_genomes_project 4 93633080 93662326 + MGP_CASTEiJ_P0066384 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066385.1 MGP_CASTEiJ_G0027592.1 mouse_genomes_project 4 93637002 93644167 + protein_coding processed_transcript MGP_CASTEiJ_T0066386.1 MGP_CASTEiJ_G0027592.1 mouse_genomes_project 4 93639887 93642224 + protein_coding processed_transcript MGP_CASTEiJ_T0066387.1 MGP_CASTEiJ_G0027592.1 mouse_genomes_project 4 93644549 93648358 + protein_coding processed_transcript MGP_CASTEiJ_T0066388.1 MGP_CASTEiJ_G0027592.1 mouse_genomes_project 4 93647367 93651508 + protein_coding processed_transcript MGP_CASTEiJ_T0004323.1 MGP_CASTEiJ_G0003774.1 mouse_genomes_project 4 42820843 42824572 + 1700055D18Rik antisense antisense MGP_CASTEiJ_T0004324.1 MGP_CASTEiJ_G0003774.1 mouse_genomes_project 4 42821987 42823565 + 1700055D18Rik antisense antisense MGP_CASTEiJ_T0067471.1 MGP_CASTEiJ_G0027816.1 mouse_genomes_project 4 116951652 116980957 + MGP_CASTEiJ_P0067471 Slc2a1 protein_coding protein_coding MGP_CASTEiJ_T0067472.1 MGP_CASTEiJ_G0027816.1 mouse_genomes_project 4 116951747 116975571 + MGP_CASTEiJ_P0067472 Slc2a1 protein_coding protein_coding MGP_CASTEiJ_T0067473.1 MGP_CASTEiJ_G0027816.1 mouse_genomes_project 4 116951802 116975543 + MGP_CASTEiJ_P0067473 Slc2a1 protein_coding protein_coding MGP_CASTEiJ_T0067474.1 MGP_CASTEiJ_G0027816.1 mouse_genomes_project 4 116951857 116980304 + MGP_CASTEiJ_P0067474 Slc2a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068373.1 MGP_CASTEiJ_G0028004.1 mouse_genomes_project 4 131105023 131125174 + MGP_CASTEiJ_P0068373 Ptafr protein_coding protein_coding MGP_CASTEiJ_T0069075.1 MGP_CASTEiJ_G0028161.1 mouse_genomes_project 4 140267956 140313189 + MGP_CASTEiJ_P0069075 Padi2 protein_coding protein_coding MGP_CASTEiJ_T0069076.1 MGP_CASTEiJ_G0028161.1 mouse_genomes_project 4 140289440 140298187 + Padi2 protein_coding processed_transcript MGP_CASTEiJ_T0069077.1 MGP_CASTEiJ_G0028161.1 mouse_genomes_project 4 140307037 140310306 + Padi2 protein_coding processed_transcript MGP_CASTEiJ_T0069041.1 MGP_CASTEiJ_G0028151.1 mouse_genomes_project 4 138866887 138887334 + MGP_CASTEiJ_P0069041 Tas1r2 protein_coding protein_coding MGP_CASTEiJ_T0069042.1 MGP_CASTEiJ_G0028151.1 mouse_genomes_project 4 138866898 138886914 + MGP_CASTEiJ_P0069042 Tas1r2 protein_coding protein_coding MGP_CASTEiJ_T0004315.1 MGP_CASTEiJ_G0003767.1 mouse_genomes_project 4 41187791 41192114 - Gm12454 antisense antisense MGP_CASTEiJ_T0004316.1 MGP_CASTEiJ_G0003767.1 mouse_genomes_project 4 41189021 41192137 - Gm12454 antisense antisense MGP_CASTEiJ_T0013964.1 MGP_CASTEiJ_G0012127.1 mouse_genomes_project 4 12242113 12242568 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017357.1 MGP_CASTEiJ_G0014895.1 mouse_genomes_project 4 130860627 130867189 - Snhg3 processed_transcript processed_transcript MGP_CASTEiJ_T0017358.1 MGP_CASTEiJ_G0014895.1 mouse_genomes_project 4 130865462 130867212 - Snhg3 processed_transcript processed_transcript MGP_CASTEiJ_T0017359.1 MGP_CASTEiJ_G0014895.1 mouse_genomes_project 4 130865463 130867159 - Snhg3 processed_transcript processed_transcript MGP_CASTEiJ_T0017360.1 MGP_CASTEiJ_G0014895.1 mouse_genomes_project 4 130865463 130866456 - Snhg3 processed_transcript processed_transcript MGP_CASTEiJ_T0017361.1 MGP_CASTEiJ_G0014895.1 mouse_genomes_project 4 130865533 130866857 - Snhg3 processed_transcript processed_transcript MGP_CASTEiJ_T0067891.1 MGP_CASTEiJ_G0027914.1 mouse_genomes_project 4 124896584 124931218 + MGP_CASTEiJ_P0067891 Psmb2 protein_coding protein_coding MGP_CASTEiJ_T0067892.1 MGP_CASTEiJ_G0027914.1 mouse_genomes_project 4 124896605 124931220 + MGP_CASTEiJ_P0067892 Psmb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067893.1 MGP_CASTEiJ_G0027914.1 mouse_genomes_project 4 124896633 124906201 + Psmb2 protein_coding processed_transcript MGP_CASTEiJ_T0067894.1 MGP_CASTEiJ_G0027914.1 mouse_genomes_project 4 124896658 124928987 + Psmb2 protein_coding processed_transcript MGP_CASTEiJ_T0007682.1 MGP_CASTEiJ_G0006297.1 mouse_genomes_project 4 69077401 69091974 + lincRNA lincRNA MGP_CASTEiJ_T0101061.1 MGP_CASTEiJ_G0037974.1 mouse_genomes_project 4 80352234 80352353 + Gm24884 snoRNA snoRNA MGP_CASTEiJ_T0101060.1 MGP_CASTEiJ_G0037973.1 mouse_genomes_project 4 78635247 78635378 - Gm25803 snoRNA snoRNA MGP_CASTEiJ_T0065450.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42283974 42479081 - MGP_CASTEiJ_P0065450 Pax5 protein_coding protein_coding MGP_CASTEiJ_T0065451.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42290326 42479013 - MGP_CASTEiJ_P0065451 Pax5 protein_coding protein_coding MGP_CASTEiJ_T0065452.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42290326 42479013 - MGP_CASTEiJ_P0065452 Pax5 protein_coding protein_coding MGP_CASTEiJ_T0065453.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42290326 42479013 - MGP_CASTEiJ_P0065453 Pax5 protein_coding protein_coding MGP_CASTEiJ_T0065454.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42290326 42479013 - MGP_CASTEiJ_P0065454 Pax5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065455.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42290326 42479013 - MGP_CASTEiJ_P0065455 Pax5 protein_coding protein_coding MGP_CASTEiJ_T0065456.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42290680 42479003 - MGP_CASTEiJ_P0065456 Pax5 protein_coding protein_coding MGP_CASTEiJ_T0065457.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42290680 42479003 - MGP_CASTEiJ_P0065457 Pax5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065458.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42290680 42479003 - MGP_CASTEiJ_P0065458 Pax5 protein_coding protein_coding MGP_CASTEiJ_T0065459.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42290680 42479003 - MGP_CASTEiJ_P0065459 Pax5 protein_coding protein_coding MGP_CASTEiJ_T0065460.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42290680 42479003 - MGP_CASTEiJ_P0065460 Pax5 protein_coding protein_coding MGP_CASTEiJ_T0065461.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42290680 42479003 - MGP_CASTEiJ_P0065461 Pax5 protein_coding protein_coding MGP_CASTEiJ_T0065462.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42290680 42479003 - MGP_CASTEiJ_P0065462 Pax5 protein_coding protein_coding MGP_CASTEiJ_T0065463.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42290687 42412548 - MGP_CASTEiJ_P0065463 Pax5 protein_coding protein_coding MGP_CASTEiJ_T0065464.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42330560 42451409 - Pax5 protein_coding processed_transcript MGP_CASTEiJ_T0065465.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42447018 42472601 - MGP_CASTEiJ_P0065465 Pax5 protein_coding protein_coding MGP_CASTEiJ_T0065466.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42447032 42472008 - Pax5 protein_coding processed_transcript MGP_CASTEiJ_T0065467.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42447032 42472008 - Pax5 protein_coding processed_transcript MGP_CASTEiJ_T0065468.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42447032 42472008 - Pax5 protein_coding processed_transcript MGP_CASTEiJ_T0065469.1 MGP_CASTEiJ_G0027373.1 mouse_genomes_project 4 42447032 42472008 - MGP_CASTEiJ_P0065469 Pax5 protein_coding protein_coding MGP_CASTEiJ_T0069150.1 MGP_CASTEiJ_G0028176.1 mouse_genomes_project 4 140825685 140829269 + MGP_CASTEiJ_P0069150 Hspb7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0011227.1 MGP_CASTEiJ_G0009415.1 mouse_genomes_project 4 16344005 16344294 - Gm25655 misc_RNA misc_RNA MGP_CASTEiJ_T0014316.1 MGP_CASTEiJ_G0012479.1 mouse_genomes_project 4 136184556 136185238 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069898.1 MGP_CASTEiJ_G0028326.1 mouse_genomes_project 4 155009853 155116138 - MGP_CASTEiJ_P0069898 Prkcz protein_coding protein_coding MGP_CASTEiJ_T0069899.1 MGP_CASTEiJ_G0028326.1 mouse_genomes_project 4 155011869 155020218 - Prkcz protein_coding processed_transcript MGP_CASTEiJ_T0069900.1 MGP_CASTEiJ_G0028326.1 mouse_genomes_project 4 155023036 155025160 - Prkcz protein_coding processed_transcript MGP_CASTEiJ_T0069901.1 MGP_CASTEiJ_G0028326.1 mouse_genomes_project 4 155045099 155095480 - MGP_CASTEiJ_P0069901 Prkcz protein_coding protein_coding MGP_CASTEiJ_T0069902.1 MGP_CASTEiJ_G0028326.1 mouse_genomes_project 4 155045099 155095697 - MGP_CASTEiJ_P0069902 Prkcz protein_coding protein_coding MGP_CASTEiJ_T0069903.1 MGP_CASTEiJ_G0028326.1 mouse_genomes_project 4 155045102 155095577 - Prkcz protein_coding processed_transcript MGP_CASTEiJ_T0069904.1 MGP_CASTEiJ_G0028326.1 mouse_genomes_project 4 155050400 155057295 - Prkcz protein_coding processed_transcript MGP_CASTEiJ_T0069905.1 MGP_CASTEiJ_G0028326.1 mouse_genomes_project 4 155050475 155095055 - Prkcz protein_coding processed_transcript MGP_CASTEiJ_T0069906.1 MGP_CASTEiJ_G0028326.1 mouse_genomes_project 4 155111102 155116256 - MGP_CASTEiJ_P0069906 Prkcz protein_coding protein_coding MGP_CASTEiJ_T0065546.1 MGP_CASTEiJ_G0027390.1 mouse_genomes_project 4 43902197 43988402 + MGP_CASTEiJ_P0065546 Tmod1 protein_coding protein_coding MGP_CASTEiJ_T0065547.1 MGP_CASTEiJ_G0027390.1 mouse_genomes_project 4 43902471 43960072 + MGP_CASTEiJ_P0065547 Tmod1 protein_coding protein_coding MGP_CASTEiJ_T0065548.1 MGP_CASTEiJ_G0027390.1 mouse_genomes_project 4 43941129 43968892 + Tmod1 protein_coding processed_transcript MGP_CASTEiJ_T0065549.1 MGP_CASTEiJ_G0027390.1 mouse_genomes_project 4 43950853 43960056 + Tmod1 protein_coding processed_transcript MGP_CASTEiJ_T0065550.1 MGP_CASTEiJ_G0027390.1 mouse_genomes_project 4 43969407 43984320 + Tmod1 protein_coding processed_transcript MGP_CASTEiJ_T0007702.1 MGP_CASTEiJ_G0006315.1 mouse_genomes_project 4 91708838 92038887 - lincRNA lincRNA MGP_CASTEiJ_T0101044.1 MGP_CASTEiJ_G0037957.1 mouse_genomes_project 4 53547625 53547816 - Gm25419 snoRNA snoRNA MGP_CASTEiJ_T0067650.1 MGP_CASTEiJ_G0027857.1 mouse_genomes_project 4 120731082 120760004 - MGP_CASTEiJ_P0067650 Cap1 protein_coding protein_coding MGP_CASTEiJ_T0067651.1 MGP_CASTEiJ_G0027857.1 mouse_genomes_project 4 120731082 120760149 - MGP_CASTEiJ_P0067651 Cap1 protein_coding protein_coding MGP_CASTEiJ_T0067652.1 MGP_CASTEiJ_G0027857.1 mouse_genomes_project 4 120731082 120760137 - MGP_CASTEiJ_P0067652 Cap1 protein_coding protein_coding MGP_CASTEiJ_T0067653.1 MGP_CASTEiJ_G0027857.1 mouse_genomes_project 4 120733897 120736112 - Cap1 protein_coding processed_transcript MGP_CASTEiJ_T0067654.1 MGP_CASTEiJ_G0027857.1 mouse_genomes_project 4 120738803 120760058 - MGP_CASTEiJ_P0067654 Cap1 protein_coding protein_coding MGP_CASTEiJ_T0067655.1 MGP_CASTEiJ_G0027857.1 mouse_genomes_project 4 120742144 120759953 - Cap1 protein_coding processed_transcript MGP_CASTEiJ_T0067656.1 MGP_CASTEiJ_G0027857.1 mouse_genomes_project 4 120743235 120759957 - Cap1 protein_coding processed_transcript MGP_CASTEiJ_T0011242.1 MGP_CASTEiJ_G0009430.1 mouse_genomes_project 4 86962510 86962659 + Gm27580 misc_RNA misc_RNA MGP_CASTEiJ_T0065149.1 MGP_CASTEiJ_G0027323.1 mouse_genomes_project 4 39396170 39404554 - MGP_CASTEiJ_P0065149 Dctn3 protein_coding protein_coding MGP_CASTEiJ_T0065150.1 MGP_CASTEiJ_G0027323.1 mouse_genomes_project 4 39396170 39404547 - MGP_CASTEiJ_P0065150 Dctn3 protein_coding protein_coding MGP_CASTEiJ_T0065151.1 MGP_CASTEiJ_G0027323.1 mouse_genomes_project 4 39401144 39404521 - Dctn3 protein_coding processed_transcript MGP_CASTEiJ_T0068058.1 MGP_CASTEiJ_G0027948.1 mouse_genomes_project 4 127717156 127748184 - MGP_CASTEiJ_P0068058 Rbbp4 protein_coding protein_coding MGP_CASTEiJ_T0068059.1 MGP_CASTEiJ_G0027948.1 mouse_genomes_project 4 127719580 127747459 - Rbbp4 protein_coding processed_transcript MGP_CASTEiJ_T0068060.1 MGP_CASTEiJ_G0027948.1 mouse_genomes_project 4 127737596 127748063 - Rbbp4 protein_coding retained_intron MGP_CASTEiJ_T0068061.1 MGP_CASTEiJ_G0027948.1 mouse_genomes_project 4 127741471 127747897 - MGP_CASTEiJ_P0068061 Rbbp4 protein_coding protein_coding MGP_CASTEiJ_T0064840.1 MGP_CASTEiJ_G0027251.1 mouse_genomes_project 4 19369045 19374593 - MGP_CASTEiJ_P0064840 Pou3f2 protein_coding protein_coding MGP_CASTEiJ_T0099808.1 MGP_CASTEiJ_G0036721.1 mouse_genomes_project 4 98806714 98806777 - Gm22100 snRNA snRNA MGP_CASTEiJ_T0101034.1 MGP_CASTEiJ_G0037947.1 mouse_genomes_project 4 38849718 38849796 - Gm23090 snoRNA snoRNA MGP_CASTEiJ_T0068856.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136605629 136617777 + MGP_CASTEiJ_P0068856 Usp48 protein_coding protein_coding MGP_CASTEiJ_T0068857.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136606014 136675755 + MGP_CASTEiJ_P0068857 Usp48 protein_coding protein_coding MGP_CASTEiJ_T0068858.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136606081 136641613 + MGP_CASTEiJ_P0068858 Usp48 protein_coding protein_coding MGP_CASTEiJ_T0068859.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136606081 136675755 + MGP_CASTEiJ_P0068859 Usp48 protein_coding protein_coding MGP_CASTEiJ_T0068860.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136606102 136641613 + MGP_CASTEiJ_P0068860 Usp48 protein_coding protein_coding MGP_CASTEiJ_T0068861.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136606214 136672547 + MGP_CASTEiJ_P0068861 Usp48 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068862.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136606214 136672547 + MGP_CASTEiJ_P0068862 Usp48 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068863.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136606214 136672547 + MGP_CASTEiJ_P0068863 Usp48 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068864.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136606214 136672547 + MGP_CASTEiJ_P0068864 Usp48 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068865.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136606214 136672547 + MGP_CASTEiJ_P0068865 Usp48 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068866.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136606214 136673465 + MGP_CASTEiJ_P0068866 Usp48 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068867.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136606214 136672547 + MGP_CASTEiJ_P0068867 Usp48 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068868.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136634795 136641613 + MGP_CASTEiJ_P0068868 Usp48 protein_coding protein_coding MGP_CASTEiJ_T0068869.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136636052 136639693 + Usp48 protein_coding processed_transcript MGP_CASTEiJ_T0068870.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136637483 136649493 + Usp48 protein_coding processed_transcript MGP_CASTEiJ_T0068871.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136639693 136649928 + MGP_CASTEiJ_P0068871 Usp48 protein_coding protein_coding MGP_CASTEiJ_T0068872.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136641484 136675761 + Usp48 protein_coding processed_transcript MGP_CASTEiJ_T0068873.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136649666 136671565 + MGP_CASTEiJ_P0068873 Usp48 protein_coding protein_coding MGP_CASTEiJ_T0068874.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136649737 136653740 + MGP_CASTEiJ_P0068874 Usp48 protein_coding protein_coding MGP_CASTEiJ_T0068875.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136650142 136669318 + MGP_CASTEiJ_P0068875 Usp48 protein_coding protein_coding MGP_CASTEiJ_T0068876.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136660657 136671558 + MGP_CASTEiJ_P0068876 Usp48 protein_coding protein_coding MGP_CASTEiJ_T0068877.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136660742 136669152 + MGP_CASTEiJ_P0068877 Usp48 protein_coding protein_coding MGP_CASTEiJ_T0068878.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136666612 136673559 + MGP_CASTEiJ_P0068878 Usp48 protein_coding protein_coding MGP_CASTEiJ_T0068879.1 MGP_CASTEiJ_G0028114.1 mouse_genomes_project 4 136674618 136675754 + Usp48 protein_coding processed_transcript MGP_CASTEiJ_T0004301.1 MGP_CASTEiJ_G0003755.1 mouse_genomes_project 4 11711023 11721043 + Gm11844 antisense antisense MGP_CASTEiJ_T0014165.1 MGP_CASTEiJ_G0012328.1 mouse_genomes_project 4 85033595 85034153 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068565.1 MGP_CASTEiJ_G0028043.1 mouse_genomes_project 4 132824378 132882191 - MGP_CASTEiJ_P0068565 Cep85 protein_coding protein_coding MGP_CASTEiJ_T0068566.1 MGP_CASTEiJ_G0028043.1 mouse_genomes_project 4 132824386 132882060 - MGP_CASTEiJ_P0068566 Cep85 protein_coding protein_coding MGP_CASTEiJ_T0068567.1 MGP_CASTEiJ_G0028043.1 mouse_genomes_project 4 132825619 132828046 - Cep85 protein_coding processed_transcript MGP_CASTEiJ_T0068568.1 MGP_CASTEiJ_G0028043.1 mouse_genomes_project 4 132827635 132834671 - Cep85 protein_coding retained_intron MGP_CASTEiJ_T0068569.1 MGP_CASTEiJ_G0028043.1 mouse_genomes_project 4 132851183 132853423 - Cep85 protein_coding retained_intron MGP_CASTEiJ_T0068570.1 MGP_CASTEiJ_G0028043.1 mouse_genomes_project 4 132854839 132855860 - Cep85 protein_coding processed_transcript MGP_CASTEiJ_T0068571.1 MGP_CASTEiJ_G0028043.1 mouse_genomes_project 4 132855035 132882164 - MGP_CASTEiJ_P0068571 Cep85 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068572.1 MGP_CASTEiJ_G0028043.1 mouse_genomes_project 4 132867981 132882130 - Cep85 protein_coding retained_intron MGP_CASTEiJ_T0010352.1 MGP_CASTEiJ_G0008540.1 mouse_genomes_project 4 148806280 148806340 + Mir5616 miRNA miRNA MGP_CASTEiJ_T0067676.1 MGP_CASTEiJ_G0027864.1 mouse_genomes_project 4 121109986 121121792 + MGP_CASTEiJ_P0067676 Hpcal4 protein_coding protein_coding MGP_CASTEiJ_T0067677.1 MGP_CASTEiJ_G0027864.1 mouse_genomes_project 4 121109998 121118587 + MGP_CASTEiJ_P0067677 Hpcal4 protein_coding protein_coding MGP_CASTEiJ_T0067678.1 MGP_CASTEiJ_G0027864.1 mouse_genomes_project 4 121110258 121115569 + MGP_CASTEiJ_P0067678 Hpcal4 protein_coding protein_coding MGP_CASTEiJ_T0067679.1 MGP_CASTEiJ_G0027864.1 mouse_genomes_project 4 121110275 121110941 + Hpcal4 protein_coding processed_transcript MGP_CASTEiJ_T0067680.1 MGP_CASTEiJ_G0027864.1 mouse_genomes_project 4 121110488 121117818 + MGP_CASTEiJ_P0067680 Hpcal4 protein_coding protein_coding MGP_CASTEiJ_T0064686.1 MGP_CASTEiJ_G0027208.1 mouse_genomes_project 4 8194753 8204347 + MGP_CASTEiJ_P0064686 Fsbp protein_coding protein_coding MGP_CASTEiJ_T0067097.1 MGP_CASTEiJ_G0027739.1 mouse_genomes_project 4 113405157 113413246 + MGP_CASTEiJ_P0067097 Mob3c protein_coding protein_coding MGP_CASTEiJ_T0067098.1 MGP_CASTEiJ_G0027739.1 mouse_genomes_project 4 113405162 113408770 + Mob3c protein_coding retained_intron MGP_CASTEiJ_T0067099.1 MGP_CASTEiJ_G0027739.1 mouse_genomes_project 4 113405723 113408600 + MGP_CASTEiJ_P0067099 Mob3c protein_coding protein_coding MGP_CASTEiJ_T0014022.1 MGP_CASTEiJ_G0012185.1 mouse_genomes_project 4 29824882 29825312 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066016.1 MGP_CASTEiJ_G0027510.1 mouse_genomes_project 4 60907231 60969153 - MGP_CASTEiJ_P0066016 Tnc protein_coding unknown_likely_coding MGP_CASTEiJ_T0066017.1 MGP_CASTEiJ_G0027510.1 mouse_genomes_project 4 60908349 60971898 - MGP_CASTEiJ_P0066017 Tnc protein_coding protein_coding MGP_CASTEiJ_T0066018.1 MGP_CASTEiJ_G0027510.1 mouse_genomes_project 4 60908349 61002847 - MGP_CASTEiJ_P0066018 Tnc protein_coding protein_coding MGP_CASTEiJ_T0066019.1 MGP_CASTEiJ_G0027510.1 mouse_genomes_project 4 60908349 60971898 - MGP_CASTEiJ_P0066019 Tnc protein_coding protein_coding MGP_CASTEiJ_T0066020.1 MGP_CASTEiJ_G0027510.1 mouse_genomes_project 4 60963796 60971898 - MGP_CASTEiJ_P0066020 Tnc protein_coding protein_coding MGP_CASTEiJ_T0068081.1 MGP_CASTEiJ_G0027953.1 mouse_genomes_project 4 127911810 127913817 - MGP_CASTEiJ_P0068081 Tssk3 protein_coding protein_coding MGP_CASTEiJ_T0068082.1 MGP_CASTEiJ_G0027953.1 mouse_genomes_project 4 127911815 127914464 - MGP_CASTEiJ_P0068082 Tssk3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070011.1 MGP_CASTEiJ_G0028345.1 mouse_genomes_project 4 155636844 155638352 + MGP_CASTEiJ_P0070011 Aurkaip1 protein_coding protein_coding MGP_CASTEiJ_T0070012.1 MGP_CASTEiJ_G0028345.1 mouse_genomes_project 4 155636923 155638740 + MGP_CASTEiJ_P0070012 Aurkaip1 protein_coding protein_coding MGP_CASTEiJ_T0070013.1 MGP_CASTEiJ_G0028345.1 mouse_genomes_project 4 155637148 155638681 + MGP_CASTEiJ_P0070013 Aurkaip1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070014.1 MGP_CASTEiJ_G0028345.1 mouse_genomes_project 4 155637231 155638078 + Aurkaip1 protein_coding retained_intron MGP_CASTEiJ_T0070015.1 MGP_CASTEiJ_G0028345.1 mouse_genomes_project 4 155637271 155638671 + MGP_CASTEiJ_P0070015 Aurkaip1 protein_coding protein_coding MGP_CASTEiJ_T0070016.1 MGP_CASTEiJ_G0028345.1 mouse_genomes_project 4 155637277 155638142 + Aurkaip1 protein_coding processed_transcript MGP_CASTEiJ_T0070017.1 MGP_CASTEiJ_G0028345.1 mouse_genomes_project 4 155637281 155638645 + MGP_CASTEiJ_P0070017 Aurkaip1 protein_coding protein_coding MGP_CASTEiJ_T0067186.1 MGP_CASTEiJ_G0027755.1 mouse_genomes_project 4 114139894 114172931 + MGP_CASTEiJ_P0067186 Ipp protein_coding protein_coding MGP_CASTEiJ_T0067187.1 MGP_CASTEiJ_G0027755.1 mouse_genomes_project 4 114139897 114172939 + MGP_CASTEiJ_P0067187 Ipp protein_coding protein_coding MGP_CASTEiJ_T0067188.1 MGP_CASTEiJ_G0027755.1 mouse_genomes_project 4 114139969 114175675 + MGP_CASTEiJ_P0067188 Ipp protein_coding unknown_likely_coding MGP_CASTEiJ_T0069249.1 MGP_CASTEiJ_G0028201.1 mouse_genomes_project 4 143419841 143464716 + MGP_CASTEiJ_P0069249 protein_coding protein_coding MGP_CASTEiJ_T0065666.1 MGP_CASTEiJ_G0027421.1 mouse_genomes_project 4 47555916 47565095 - MGP_CASTEiJ_P0065666 Mrpl50 protein_coding protein_coding MGP_CASTEiJ_T0004311.1 MGP_CASTEiJ_G0003763.1 mouse_genomes_project 4 37848217 37849606 + antisense antisense MGP_CASTEiJ_T0017342.1 MGP_CASTEiJ_G0014890.1 mouse_genomes_project 4 122796379 122814385 - Gm12915 processed_transcript processed_transcript MGP_CASTEiJ_T0101088.1 MGP_CASTEiJ_G0038001.1 mouse_genomes_project 4 129651497 129651631 + Gm25261 snoRNA snoRNA MGP_CASTEiJ_T0064548.1 MGP_CASTEiJ_G0027183.1 mouse_genomes_project 4 698660 703875 - MGP_CASTEiJ_P0064548 Penk protein_coding unknown_likely_coding MGP_CASTEiJ_T0064549.1 MGP_CASTEiJ_G0027183.1 mouse_genomes_project 4 699213 703976 - MGP_CASTEiJ_P0064549 Penk protein_coding protein_coding MGP_CASTEiJ_T0099816.1 MGP_CASTEiJ_G0036729.1 mouse_genomes_project 4 107035703 107035808 - Gm23589 snRNA snRNA MGP_CASTEiJ_T0013968.1 MGP_CASTEiJ_G0012131.1 mouse_genomes_project 4 12700557 12700895 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065249.1 MGP_CASTEiJ_G0027339.1 mouse_genomes_project 4 40706931 40823109 + Unc13b protein_coding retained_intron MGP_CASTEiJ_T0065250.1 MGP_CASTEiJ_G0027339.1 mouse_genomes_project 4 40706947 40932545 + MGP_CASTEiJ_P0065250 Unc13b protein_coding protein_coding MGP_CASTEiJ_T0065251.1 MGP_CASTEiJ_G0027339.1 mouse_genomes_project 4 40706954 40828462 + Unc13b protein_coding processed_transcript MGP_CASTEiJ_T0065252.1 MGP_CASTEiJ_G0027339.1 mouse_genomes_project 4 40706962 40825538 + Unc13b protein_coding retained_intron MGP_CASTEiJ_T0065253.1 MGP_CASTEiJ_G0027339.1 mouse_genomes_project 4 40707051 40931302 + MGP_CASTEiJ_P0065253 Unc13b protein_coding protein_coding MGP_CASTEiJ_T0065254.1 MGP_CASTEiJ_G0027339.1 mouse_genomes_project 4 40707051 40931302 + MGP_CASTEiJ_P0065254 Unc13b protein_coding protein_coding MGP_CASTEiJ_T0065255.1 MGP_CASTEiJ_G0027339.1 mouse_genomes_project 4 40707058 40931285 + MGP_CASTEiJ_P0065255 Unc13b protein_coding protein_coding MGP_CASTEiJ_T0065256.1 MGP_CASTEiJ_G0027339.1 mouse_genomes_project 4 40766251 40903926 + Unc13b protein_coding processed_transcript MGP_CASTEiJ_T0065257.1 MGP_CASTEiJ_G0027339.1 mouse_genomes_project 4 40834945 40898702 + Unc13b protein_coding processed_transcript MGP_CASTEiJ_T0065258.1 MGP_CASTEiJ_G0027339.1 mouse_genomes_project 4 40837562 40903248 + MGP_CASTEiJ_P0065258 Unc13b protein_coding protein_coding MGP_CASTEiJ_T0065259.1 MGP_CASTEiJ_G0027339.1 mouse_genomes_project 4 40872503 40932554 + MGP_CASTEiJ_P0065259 Unc13b protein_coding unknown_likely_coding MGP_CASTEiJ_T0065260.1 MGP_CASTEiJ_G0027339.1 mouse_genomes_project 4 40896268 40899117 + Unc13b protein_coding retained_intron MGP_CASTEiJ_T0065261.1 MGP_CASTEiJ_G0027339.1 mouse_genomes_project 4 40899965 40913110 + Unc13b protein_coding retained_intron MGP_CASTEiJ_T0065262.1 MGP_CASTEiJ_G0027339.1 mouse_genomes_project 4 40915740 40922774 + Unc13b protein_coding retained_intron MGP_CASTEiJ_T0065263.1 MGP_CASTEiJ_G0027339.1 mouse_genomes_project 4 40922052 40924945 + MGP_CASTEiJ_P0065263 Unc13b protein_coding protein_coding MGP_CASTEiJ_T0065264.1 MGP_CASTEiJ_G0027339.1 mouse_genomes_project 4 40923336 40928273 + Unc13b protein_coding retained_intron MGP_CASTEiJ_T0069944.1 MGP_CASTEiJ_G0028332.1 mouse_genomes_project 4 155382794 155406863 + MGP_CASTEiJ_P0069944 Slc35e2 protein_coding protein_coding MGP_CASTEiJ_T0069945.1 MGP_CASTEiJ_G0028332.1 mouse_genomes_project 4 155382989 155403465 + MGP_CASTEiJ_P0069945 Slc35e2 protein_coding protein_coding MGP_CASTEiJ_T0069946.1 MGP_CASTEiJ_G0028332.1 mouse_genomes_project 4 155383339 155402694 + MGP_CASTEiJ_P0069946 Slc35e2 protein_coding protein_coding MGP_CASTEiJ_T0069947.1 MGP_CASTEiJ_G0028332.1 mouse_genomes_project 4 155392247 155402571 + Slc35e2 protein_coding processed_transcript MGP_CASTEiJ_T0066494.1 MGP_CASTEiJ_G0027619.1 mouse_genomes_project 4 97619898 97676758 + MGP_CASTEiJ_P0066494 Pgm2 protein_coding protein_coding MGP_CASTEiJ_T0066495.1 MGP_CASTEiJ_G0027619.1 mouse_genomes_project 4 97619987 97715593 + MGP_CASTEiJ_P0066495 Pgm2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066496.1 MGP_CASTEiJ_G0027619.1 mouse_genomes_project 4 97643436 97676758 + MGP_CASTEiJ_P0066496 Pgm2 protein_coding protein_coding MGP_CASTEiJ_T0069792.1 MGP_CASTEiJ_G0028308.1 mouse_genomes_project 4 153833982 153837154 - MGP_CASTEiJ_P0069792 Tprgl protein_coding protein_coding MGP_CASTEiJ_T0069793.1 MGP_CASTEiJ_G0028308.1 mouse_genomes_project 4 153834637 153837154 - Tprgl protein_coding processed_transcript MGP_CASTEiJ_T0069794.1 MGP_CASTEiJ_G0028308.1 mouse_genomes_project 4 153834853 153837120 - MGP_CASTEiJ_P0069794 Tprgl protein_coding protein_coding MGP_CASTEiJ_T0069795.1 MGP_CASTEiJ_G0028308.1 mouse_genomes_project 4 153834970 153836664 - Tprgl protein_coding processed_transcript MGP_CASTEiJ_T0069796.1 MGP_CASTEiJ_G0028308.1 mouse_genomes_project 4 153836064 153837094 - Tprgl protein_coding processed_transcript MGP_CASTEiJ_T0007832.1 MGP_CASTEiJ_G0006411.1 mouse_genomes_project 4 152273450 152276460 + Gm833 lincRNA lincRNA MGP_CASTEiJ_T0069381.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147790671 147807456 - MGP_CASTEiJ_P0069381 Tardbp protein_coding protein_coding MGP_CASTEiJ_T0069382.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147790671 147807456 - MGP_CASTEiJ_P0069382 Tardbp protein_coding protein_coding MGP_CASTEiJ_T0069383.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147790671 147807479 - MGP_CASTEiJ_P0069383 Tardbp protein_coding protein_coding MGP_CASTEiJ_T0069384.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147790671 147807456 - MGP_CASTEiJ_P0069384 Tardbp protein_coding protein_coding MGP_CASTEiJ_T0069385.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147790676 147807223 - MGP_CASTEiJ_P0069385 Tardbp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069386.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147790677 147794430 - Tardbp protein_coding processed_transcript MGP_CASTEiJ_T0069387.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147790677 147797572 - MGP_CASTEiJ_P0069387 Tardbp protein_coding protein_coding MGP_CASTEiJ_T0069388.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147790774 147798077 - MGP_CASTEiJ_P0069388 Tardbp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069389.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147793757 147796876 - Tardbp protein_coding processed_transcript MGP_CASTEiJ_T0069390.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147793901 147795272 - Tardbp protein_coding processed_transcript MGP_CASTEiJ_T0069391.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147794050 147796653 - Tardbp protein_coding processed_transcript MGP_CASTEiJ_T0069392.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147794210 147807226 - MGP_CASTEiJ_P0069392 Tardbp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069393.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147794927 147797168 - MGP_CASTEiJ_P0069393 Tardbp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069394.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147795007 147800801 - MGP_CASTEiJ_P0069394 Tardbp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069395.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147795012 147799492 - MGP_CASTEiJ_P0069395 Tardbp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069396.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147795016 147807219 - MGP_CASTEiJ_P0069396 Tardbp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069397.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147795016 147799487 - MGP_CASTEiJ_P0069397 Tardbp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069398.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147795017 147798151 - MGP_CASTEiJ_P0069398 Tardbp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069399.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147795017 147807219 - MGP_CASTEiJ_P0069399 Tardbp protein_coding protein_coding MGP_CASTEiJ_T0069400.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147795154 147799414 - MGP_CASTEiJ_P0069400 Tardbp protein_coding protein_coding MGP_CASTEiJ_T0069401.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147795337 147797481 - MGP_CASTEiJ_P0069401 Tardbp protein_coding protein_coding MGP_CASTEiJ_T0069402.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147795599 147798087 - MGP_CASTEiJ_P0069402 Tardbp protein_coding protein_coding MGP_CASTEiJ_T0069403.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147795742 147804181 - MGP_CASTEiJ_P0069403 Tardbp protein_coding protein_coding MGP_CASTEiJ_T0069404.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147795845 147804181 - MGP_CASTEiJ_P0069404 Tardbp protein_coding protein_coding MGP_CASTEiJ_T0069405.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147795845 147804181 - MGP_CASTEiJ_P0069405 Tardbp protein_coding protein_coding MGP_CASTEiJ_T0069406.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147796408 147800908 - MGP_CASTEiJ_P0069406 Tardbp protein_coding protein_coding MGP_CASTEiJ_T0069407.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147796835 147807231 - MGP_CASTEiJ_P0069407 Tardbp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069408.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147797405 147807215 - MGP_CASTEiJ_P0069408 Tardbp protein_coding protein_coding MGP_CASTEiJ_T0069409.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147799489 147806787 - MGP_CASTEiJ_P0069409 Tardbp protein_coding protein_coding MGP_CASTEiJ_T0069410.1 MGP_CASTEiJ_G0028244.1 mouse_genomes_project 4 147803903 147807219 - Tardbp protein_coding retained_intron MGP_CASTEiJ_T0014173.1 MGP_CASTEiJ_G0012336.1 mouse_genomes_project 4 88112562 88113186 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010278.1 MGP_CASTEiJ_G0008466.1 mouse_genomes_project 4 6248139 6248211 + Gm25677 miRNA miRNA MGP_CASTEiJ_T0066812.1 MGP_CASTEiJ_G0027677.1 mouse_genomes_project 4 105858195 105878976 - MGP_CASTEiJ_P0066812 Cpt2 protein_coding protein_coding MGP_CASTEiJ_T0066813.1 MGP_CASTEiJ_G0027677.1 mouse_genomes_project 4 105858197 105878926 - MGP_CASTEiJ_P0066813 Cpt2 protein_coding protein_coding MGP_CASTEiJ_T0066814.1 MGP_CASTEiJ_G0027677.1 mouse_genomes_project 4 105863068 105878911 - MGP_CASTEiJ_P0066814 Cpt2 protein_coding protein_coding MGP_CASTEiJ_T0066815.1 MGP_CASTEiJ_G0027677.1 mouse_genomes_project 4 105863155 105868130 - Cpt2 protein_coding retained_intron MGP_CASTEiJ_T0066816.1 MGP_CASTEiJ_G0027677.1 mouse_genomes_project 4 105863302 105878813 - Cpt2 protein_coding processed_transcript MGP_CASTEiJ_T0066817.1 MGP_CASTEiJ_G0027677.1 mouse_genomes_project 4 105863657 105878954 - MGP_CASTEiJ_P0066817 Cpt2 protein_coding protein_coding MGP_CASTEiJ_T0010335.1 MGP_CASTEiJ_G0008523.1 mouse_genomes_project 4 133193614 133193705 + Gm23634 miRNA miRNA MGP_CASTEiJ_T0064948.1 MGP_CASTEiJ_G0027273.1 mouse_genomes_project 4 30426151 30441206 - MGP_CASTEiJ_P0064948 Pm20d2 protein_coding protein_coding MGP_CASTEiJ_T0064949.1 MGP_CASTEiJ_G0027273.1 mouse_genomes_project 4 30433448 30441510 - MGP_CASTEiJ_P0064949 Pm20d2 protein_coding protein_coding MGP_CASTEiJ_T0064950.1 MGP_CASTEiJ_G0027273.1 mouse_genomes_project 4 30433871 30441235 - MGP_CASTEiJ_P0064950 Pm20d2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065010.1 MGP_CASTEiJ_G0027287.1 mouse_genomes_project 4 32257326 32274218 + MGP_CASTEiJ_P0065010 Cga protein_coding protein_coding MGP_CASTEiJ_T0066307.1 MGP_CASTEiJ_G0027579.1 mouse_genomes_project 4 88832189 88986265 - MGP_CASTEiJ_P0066307 Elavl2 protein_coding protein_coding MGP_CASTEiJ_T0066308.1 MGP_CASTEiJ_G0027579.1 mouse_genomes_project 4 88832189 88958277 - MGP_CASTEiJ_P0066308 Elavl2 protein_coding protein_coding MGP_CASTEiJ_T0066309.1 MGP_CASTEiJ_G0027579.1 mouse_genomes_project 4 88832189 88958242 - MGP_CASTEiJ_P0066309 Elavl2 protein_coding protein_coding MGP_CASTEiJ_T0066310.1 MGP_CASTEiJ_G0027579.1 mouse_genomes_project 4 88832189 88958262 - MGP_CASTEiJ_P0066310 Elavl2 protein_coding protein_coding MGP_CASTEiJ_T0066311.1 MGP_CASTEiJ_G0027579.1 mouse_genomes_project 4 88834505 88836014 - Elavl2 protein_coding retained_intron MGP_CASTEiJ_T0066312.1 MGP_CASTEiJ_G0027579.1 mouse_genomes_project 4 88834665 88897546 - MGP_CASTEiJ_P0066312 Elavl2 protein_coding protein_coding MGP_CASTEiJ_T0066313.1 MGP_CASTEiJ_G0027579.1 mouse_genomes_project 4 88834665 88895781 - MGP_CASTEiJ_P0066313 Elavl2 protein_coding protein_coding MGP_CASTEiJ_T0066314.1 MGP_CASTEiJ_G0027579.1 mouse_genomes_project 4 88840092 88962518 - Elavl2 protein_coding retained_intron MGP_CASTEiJ_T0066315.1 MGP_CASTEiJ_G0027579.1 mouse_genomes_project 4 88845546 88942888 - MGP_CASTEiJ_P0066315 Elavl2 protein_coding protein_coding MGP_CASTEiJ_T0066316.1 MGP_CASTEiJ_G0027579.1 mouse_genomes_project 4 88892820 88959238 - MGP_CASTEiJ_P0066316 Elavl2 protein_coding protein_coding MGP_CASTEiJ_T0066317.1 MGP_CASTEiJ_G0027579.1 mouse_genomes_project 4 88892914 88958164 - MGP_CASTEiJ_P0066317 Elavl2 protein_coding protein_coding MGP_CASTEiJ_T0066318.1 MGP_CASTEiJ_G0027579.1 mouse_genomes_project 4 88966645 88986257 - Elavl2 protein_coding processed_transcript MGP_CASTEiJ_T0066319.1 MGP_CASTEiJ_G0027579.1 mouse_genomes_project 4 88986175 88987787 - Elavl2 protein_coding processed_transcript MGP_CASTEiJ_T0067737.1 MGP_CASTEiJ_G0027882.1 mouse_genomes_project 4 122804712 122868132 + MGP_CASTEiJ_P0067737 Inpp5b protein_coding protein_coding MGP_CASTEiJ_T0067738.1 MGP_CASTEiJ_G0027882.1 mouse_genomes_project 4 122804720 122814510 + MGP_CASTEiJ_P0067738 Inpp5b protein_coding protein_coding MGP_CASTEiJ_T0067739.1 MGP_CASTEiJ_G0027882.1 mouse_genomes_project 4 122804734 122868126 + MGP_CASTEiJ_P0067739 Inpp5b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067740.1 MGP_CASTEiJ_G0027882.1 mouse_genomes_project 4 122804740 122814472 + MGP_CASTEiJ_P0067740 Inpp5b protein_coding protein_coding MGP_CASTEiJ_T0067741.1 MGP_CASTEiJ_G0027882.1 mouse_genomes_project 4 122833083 122847395 + Inpp5b protein_coding processed_transcript MGP_CASTEiJ_T0067742.1 MGP_CASTEiJ_G0027882.1 mouse_genomes_project 4 122833189 122847448 + Inpp5b protein_coding processed_transcript MGP_CASTEiJ_T0067743.1 MGP_CASTEiJ_G0027882.1 mouse_genomes_project 4 122861933 122864533 + Inpp5b protein_coding processed_transcript MGP_CASTEiJ_T0067744.1 MGP_CASTEiJ_G0027882.1 mouse_genomes_project 4 122866168 122867731 + Inpp5b protein_coding processed_transcript MGP_CASTEiJ_T0066987.1 MGP_CASTEiJ_G0027709.1 mouse_genomes_project 4 108487339 109033711 + MGP_CASTEiJ_P0066987 Agbl4 protein_coding protein_coding MGP_CASTEiJ_T0066988.1 MGP_CASTEiJ_G0027709.1 mouse_genomes_project 4 108487376 109638216 + MGP_CASTEiJ_P0066988 Agbl4 protein_coding protein_coding MGP_CASTEiJ_T0066989.1 MGP_CASTEiJ_G0027709.1 mouse_genomes_project 4 108487376 108738459 + MGP_CASTEiJ_P0066989 Agbl4 protein_coding protein_coding MGP_CASTEiJ_T0066990.1 MGP_CASTEiJ_G0027709.1 mouse_genomes_project 4 108487376 109736674 + MGP_CASTEiJ_P0066990 Agbl4 protein_coding protein_coding MGP_CASTEiJ_T0066991.1 MGP_CASTEiJ_G0027709.1 mouse_genomes_project 4 108487469 109729975 + MGP_CASTEiJ_P0066991 Agbl4 protein_coding protein_coding MGP_CASTEiJ_T0066992.1 MGP_CASTEiJ_G0027709.1 mouse_genomes_project 4 108487469 109729975 + MGP_CASTEiJ_P0066992 Agbl4 protein_coding protein_coding MGP_CASTEiJ_T0066993.1 MGP_CASTEiJ_G0027709.1 mouse_genomes_project 4 109197560 109325035 + Agbl4 protein_coding processed_transcript MGP_CASTEiJ_T0066994.1 MGP_CASTEiJ_G0027709.1 mouse_genomes_project 4 109197630 109692790 + MGP_CASTEiJ_P0066994 Agbl4 protein_coding protein_coding MGP_CASTEiJ_T0067002.1 MGP_CASTEiJ_G0027709.1 mouse_genomes_project 4 109637900 109729034 + Agbl4 protein_coding processed_transcript MGP_CASTEiJ_T0067003.1 MGP_CASTEiJ_G0027709.1 mouse_genomes_project 4 109637930 109729972 + Agbl4 protein_coding processed_transcript MGP_CASTEiJ_T0069467.1 MGP_CASTEiJ_G0028255.1 mouse_genomes_project 4 148732511 148750105 - MGP_CASTEiJ_P0069467 Nmnat1 protein_coding protein_coding MGP_CASTEiJ_T0069468.1 MGP_CASTEiJ_G0028255.1 mouse_genomes_project 4 148733379 148750075 - MGP_CASTEiJ_P0069468 Nmnat1 protein_coding protein_coding MGP_CASTEiJ_T0069469.1 MGP_CASTEiJ_G0028255.1 mouse_genomes_project 4 148733379 148750101 - MGP_CASTEiJ_P0069469 Nmnat1 protein_coding protein_coding MGP_CASTEiJ_T0069470.1 MGP_CASTEiJ_G0028255.1 mouse_genomes_project 4 148739263 148750066 - MGP_CASTEiJ_P0069470 Nmnat1 protein_coding protein_coding MGP_CASTEiJ_T0014205.1 MGP_CASTEiJ_G0012368.1 mouse_genomes_project 4 99070328 99071047 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014282.1 MGP_CASTEiJ_G0012445.1 mouse_genomes_project 4 123107858 123108182 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004446.1 MGP_CASTEiJ_G0003868.1 mouse_genomes_project 4 141420538 141424353 + Fhad1os1 antisense antisense MGP_CASTEiJ_T0069797.1 MGP_CASTEiJ_G0028309.1 mouse_genomes_project 4 153856208 153967329 + MGP_CASTEiJ_P0069797 Megf6 protein_coding protein_coding MGP_CASTEiJ_T0069798.1 MGP_CASTEiJ_G0028309.1 mouse_genomes_project 4 153925257 153963377 + MGP_CASTEiJ_P0069798 Megf6 protein_coding protein_coding MGP_CASTEiJ_T0069799.1 MGP_CASTEiJ_G0028309.1 mouse_genomes_project 4 153936997 153941601 + Megf6 protein_coding retained_intron MGP_CASTEiJ_T0069800.1 MGP_CASTEiJ_G0028309.1 mouse_genomes_project 4 153953928 153966822 + Megf6 protein_coding processed_transcript MGP_CASTEiJ_T0069801.1 MGP_CASTEiJ_G0028309.1 mouse_genomes_project 4 153955473 153959949 + MGP_CASTEiJ_P0069801 Megf6 protein_coding protein_coding MGP_CASTEiJ_T0069802.1 MGP_CASTEiJ_G0028309.1 mouse_genomes_project 4 153959203 153965766 + Megf6 protein_coding retained_intron MGP_CASTEiJ_T0069803.1 MGP_CASTEiJ_G0028309.1 mouse_genomes_project 4 153959299 153960451 + Megf6 protein_coding retained_intron MGP_CASTEiJ_T0066346.1 MGP_CASTEiJ_G0027589.1 mouse_genomes_project 4 92536498 92549110 - Mysm1 protein_coding processed_transcript MGP_CASTEiJ_T0066347.1 MGP_CASTEiJ_G0027589.1 mouse_genomes_project 4 92540133 92578459 - MGP_CASTEiJ_P0066347 Mysm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066348.1 MGP_CASTEiJ_G0027589.1 mouse_genomes_project 4 92542887 92549242 - Mysm1 protein_coding processed_transcript MGP_CASTEiJ_T0066349.1 MGP_CASTEiJ_G0027589.1 mouse_genomes_project 4 92560087 92578437 - Mysm1 protein_coding processed_transcript MGP_CASTEiJ_T0066350.1 MGP_CASTEiJ_G0027589.1 mouse_genomes_project 4 92561314 92578404 - Mysm1 protein_coding processed_transcript MGP_CASTEiJ_T0066351.1 MGP_CASTEiJ_G0027589.1 mouse_genomes_project 4 92561354 92567944 - Mysm1 protein_coding processed_transcript MGP_CASTEiJ_T0066352.1 MGP_CASTEiJ_G0027589.1 mouse_genomes_project 4 92561446 92578440 - Mysm1 protein_coding processed_transcript MGP_CASTEiJ_T0066353.1 MGP_CASTEiJ_G0027589.1 mouse_genomes_project 4 92567572 92578415 - Mysm1 protein_coding processed_transcript MGP_CASTEiJ_T0066354.1 MGP_CASTEiJ_G0027589.1 mouse_genomes_project 4 92569731 92578437 - Mysm1 protein_coding processed_transcript MGP_CASTEiJ_T0064783.1 MGP_CASTEiJ_G0027239.1 mouse_genomes_project 4 16710295 16763453 - MGP_CASTEiJ_P0064783 Atp6v0d2 protein_coding protein_coding MGP_CASTEiJ_T0064784.1 MGP_CASTEiJ_G0027239.1 mouse_genomes_project 4 16724319 16757838 - MGP_CASTEiJ_P0064784 Atp6v0d2 protein_coding protein_coding MGP_CASTEiJ_T0014304.1 MGP_CASTEiJ_G0012467.1 mouse_genomes_project 4 134087589 134087900 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069224.1 MGP_CASTEiJ_G0028193.1 mouse_genomes_project 4 141477021 141534888 - MGP_CASTEiJ_P0069224 Tmem51 protein_coding protein_coding MGP_CASTEiJ_T0068011.1 MGP_CASTEiJ_G0027941.1 mouse_genomes_project 4 127484312 127505694 - MGP_CASTEiJ_P0068011 Hpca protein_coding unknown_likely_coding MGP_CASTEiJ_T0068016.1 MGP_CASTEiJ_G0027941.1 mouse_genomes_project 4 127497001 127505841 - MGP_CASTEiJ_P0068016 Hpca protein_coding protein_coding MGP_CASTEiJ_T0068017.1 MGP_CASTEiJ_G0027941.1 mouse_genomes_project 4 127497001 127508909 - MGP_CASTEiJ_P0068017 Hpca protein_coding protein_coding MGP_CASTEiJ_T0068018.1 MGP_CASTEiJ_G0027941.1 mouse_genomes_project 4 127497007 127508165 - MGP_CASTEiJ_P0068018 Hpca protein_coding protein_coding MGP_CASTEiJ_T0068019.1 MGP_CASTEiJ_G0027941.1 mouse_genomes_project 4 127497007 127508613 - MGP_CASTEiJ_P0068019 Hpca protein_coding protein_coding MGP_CASTEiJ_T0068020.1 MGP_CASTEiJ_G0027941.1 mouse_genomes_project 4 127497703 127507820 - MGP_CASTEiJ_P0068020 Hpca protein_coding protein_coding MGP_CASTEiJ_T0068021.1 MGP_CASTEiJ_G0027941.1 mouse_genomes_project 4 127497717 127508762 - MGP_CASTEiJ_P0068021 Hpca protein_coding protein_coding MGP_CASTEiJ_T0068022.1 MGP_CASTEiJ_G0027941.1 mouse_genomes_project 4 127497892 127508798 - MGP_CASTEiJ_P0068022 Hpca protein_coding protein_coding MGP_CASTEiJ_T0068023.1 MGP_CASTEiJ_G0027941.1 mouse_genomes_project 4 127499530 127508612 - MGP_CASTEiJ_P0068023 Hpca protein_coding protein_coding MGP_CASTEiJ_T0068024.1 MGP_CASTEiJ_G0027941.1 mouse_genomes_project 4 127505478 127508581 - MGP_CASTEiJ_P0068024 Hpca protein_coding protein_coding MGP_CASTEiJ_T0067783.1 MGP_CASTEiJ_G0027891.1 mouse_genomes_project 4 123147550 123159715 - MGP_CASTEiJ_P0067783 Dnali1 protein_coding protein_coding MGP_CASTEiJ_T0004402.1 MGP_CASTEiJ_G0003832.1 mouse_genomes_project 4 122578444 122716427 - Gm27247 antisense antisense MGP_CASTEiJ_T0065000.1 MGP_CASTEiJ_G0027285.1 mouse_genomes_project 4 32120479 32133607 - MGP_CASTEiJ_P0065000 Smim8 protein_coding protein_coding MGP_CASTEiJ_T0065001.1 MGP_CASTEiJ_G0027285.1 mouse_genomes_project 4 32120479 32133729 - MGP_CASTEiJ_P0065001 Smim8 protein_coding protein_coding MGP_CASTEiJ_T0065002.1 MGP_CASTEiJ_G0027285.1 mouse_genomes_project 4 32120479 32133622 - MGP_CASTEiJ_P0065002 Smim8 protein_coding protein_coding MGP_CASTEiJ_T0065003.1 MGP_CASTEiJ_G0027285.1 mouse_genomes_project 4 32120479 32133595 - MGP_CASTEiJ_P0065003 Smim8 protein_coding protein_coding MGP_CASTEiJ_T0065004.1 MGP_CASTEiJ_G0027285.1 mouse_genomes_project 4 32120479 32133528 - MGP_CASTEiJ_P0065004 Smim8 protein_coding protein_coding MGP_CASTEiJ_T0065005.1 MGP_CASTEiJ_G0027285.1 mouse_genomes_project 4 32120490 32133589 - Smim8 protein_coding processed_transcript MGP_CASTEiJ_T0065006.1 MGP_CASTEiJ_G0027285.1 mouse_genomes_project 4 32122703 32133613 - Smim8 protein_coding retained_intron MGP_CASTEiJ_T0065007.1 MGP_CASTEiJ_G0027285.1 mouse_genomes_project 4 32123061 32133476 - Smim8 protein_coding processed_transcript MGP_CASTEiJ_T0065470.1 MGP_CASTEiJ_G0027374.1 mouse_genomes_project 4 42527284 42533350 + MGP_CASTEiJ_P0065470 Zcchc7 protein_coding protein_coding MGP_CASTEiJ_T0065471.1 MGP_CASTEiJ_G0027374.1 mouse_genomes_project 4 42527951 42711083 + MGP_CASTEiJ_P0065471 Zcchc7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065472.1 MGP_CASTEiJ_G0027374.1 mouse_genomes_project 4 42527975 42732090 + MGP_CASTEiJ_P0065472 Zcchc7 protein_coding protein_coding MGP_CASTEiJ_T0065473.1 MGP_CASTEiJ_G0027374.1 mouse_genomes_project 4 42527995 42709140 + Zcchc7 protein_coding retained_intron MGP_CASTEiJ_T0065474.1 MGP_CASTEiJ_G0027374.1 mouse_genomes_project 4 42528046 42533607 + MGP_CASTEiJ_P0065474 Zcchc7 protein_coding protein_coding MGP_CASTEiJ_T0065475.1 MGP_CASTEiJ_G0027374.1 mouse_genomes_project 4 42528054 42707293 + MGP_CASTEiJ_P0065475 Zcchc7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065476.1 MGP_CASTEiJ_G0027374.1 mouse_genomes_project 4 42531822 42710202 + Zcchc7 protein_coding retained_intron MGP_CASTEiJ_T0065477.1 MGP_CASTEiJ_G0027374.1 mouse_genomes_project 4 42704659 42731248 + Zcchc7 protein_coding processed_transcript MGP_CASTEiJ_T0065478.1 MGP_CASTEiJ_G0027374.1 mouse_genomes_project 4 42722958 42732102 + MGP_CASTEiJ_P0065478 Zcchc7 protein_coding protein_coding MGP_CASTEiJ_T0065479.1 MGP_CASTEiJ_G0027374.1 mouse_genomes_project 4 42725848 42731248 + MGP_CASTEiJ_P0065479 Zcchc7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070116.1 MGP_CASTEiJ_G0028362.1 mouse_genomes_project 4 155986456 155987857 - MGP_CASTEiJ_P0070116 Isg15 protein_coding protein_coding MGP_CASTEiJ_T0010285.1 MGP_CASTEiJ_G0008473.1 mouse_genomes_project 4 30713834 30713963 + Mir8118 miRNA miRNA MGP_CASTEiJ_T0004417.1 MGP_CASTEiJ_G0003844.1 mouse_genomes_project 4 131039012 131045074 - Gm12981 antisense antisense MGP_CASTEiJ_T0069253.1 MGP_CASTEiJ_G0028205.1 mouse_genomes_project 4 143902289 143905523 + MGP_CASTEiJ_P0069253 protein_coding protein_coding MGP_CASTEiJ_T0101057.1 MGP_CASTEiJ_G0037970.1 mouse_genomes_project 4 71779444 71779576 + Gm26379 snoRNA snoRNA MGP_CASTEiJ_T0066028.1 MGP_CASTEiJ_G0027515.1 mouse_genomes_project 4 62586299 62600991 + MGP_CASTEiJ_P0066028 Trim32 protein_coding protein_coding MGP_CASTEiJ_T0066029.1 MGP_CASTEiJ_G0027515.1 mouse_genomes_project 4 62586299 62600991 + MGP_CASTEiJ_P0066029 Trim32 protein_coding protein_coding MGP_CASTEiJ_T0066030.1 MGP_CASTEiJ_G0027515.1 mouse_genomes_project 4 62586562 62598373 + MGP_CASTEiJ_P0066030 Trim32 protein_coding protein_coding MGP_CASTEiJ_T0066031.1 MGP_CASTEiJ_G0027515.1 mouse_genomes_project 4 62586562 62598513 + MGP_CASTEiJ_P0066031 Trim32 protein_coding protein_coding MGP_CASTEiJ_T0014311.1 MGP_CASTEiJ_G0012474.1 mouse_genomes_project 4 134861608 134861972 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001368.1 MGP_CASTEiJ_G0001298.1 mouse_genomes_project 4 130339336 130343948 + TEC TEC MGP_CASTEiJ_T0068295.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130386276 130401683 - MGP_CASTEiJ_P0068295 Epb41 protein_coding protein_coding MGP_CASTEiJ_T0068296.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130386314 130401720 - Epb41 protein_coding processed_transcript MGP_CASTEiJ_T0068297.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130386314 130544828 - Epb41 protein_coding processed_transcript MGP_CASTEiJ_T0068298.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130386314 130544799 - MGP_CASTEiJ_P0068298 Epb41 protein_coding protein_coding MGP_CASTEiJ_T0068299.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130386314 130544799 - MGP_CASTEiJ_P0068299 Epb41 protein_coding protein_coding MGP_CASTEiJ_T0068300.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130386314 130474928 - MGP_CASTEiJ_P0068300 Epb41 protein_coding protein_coding MGP_CASTEiJ_T0068301.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130386314 130433601 - MGP_CASTEiJ_P0068301 Epb41 protein_coding protein_coding MGP_CASTEiJ_T0068302.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130386314 130471311 - MGP_CASTEiJ_P0068302 Epb41 protein_coding protein_coding MGP_CASTEiJ_T0068303.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130386314 130433632 - MGP_CASTEiJ_P0068303 Epb41 protein_coding protein_coding MGP_CASTEiJ_T0068304.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130386314 130474929 - MGP_CASTEiJ_P0068304 Epb41 protein_coding protein_coding MGP_CASTEiJ_T0068305.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130386324 130517524 - MGP_CASTEiJ_P0068305 Epb41 protein_coding protein_coding MGP_CASTEiJ_T0068306.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130386324 130541634 - MGP_CASTEiJ_P0068306 Epb41 protein_coding protein_coding MGP_CASTEiJ_T0068307.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130386324 130517524 - MGP_CASTEiJ_P0068307 Epb41 protein_coding protein_coding MGP_CASTEiJ_T0068308.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130387025 130541634 - Epb41 protein_coding processed_transcript MGP_CASTEiJ_T0068309.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130389414 130474922 - MGP_CASTEiJ_P0068309 Epb41 protein_coding protein_coding MGP_CASTEiJ_T0068310.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130421252 130478293 - MGP_CASTEiJ_P0068310 Epb41 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068311.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130423348 130517537 - MGP_CASTEiJ_P0068311 Epb41 protein_coding protein_coding MGP_CASTEiJ_T0068312.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130455734 130467830 - Epb41 protein_coding processed_transcript MGP_CASTEiJ_T0068313.1 MGP_CASTEiJ_G0027990.1 mouse_genomes_project 4 130471292 130544771 - Epb41 protein_coding processed_transcript MGP_CASTEiJ_T0013955.1 MGP_CASTEiJ_G0012118.1 mouse_genomes_project 4 8018995 8019828 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068484.1 MGP_CASTEiJ_G0028030.1 mouse_genomes_project 4 132250885 132253873 - MGP_CASTEiJ_P0068484 Sfn protein_coding protein_coding MGP_CASTEiJ_T0065884.1 MGP_CASTEiJ_G0027476.1 mouse_genomes_project 4 58070468 58117684 + MGP_CASTEiJ_P0065884 Hsdl2 protein_coding protein_coding MGP_CASTEiJ_T0065885.1 MGP_CASTEiJ_G0027476.1 mouse_genomes_project 4 58070550 58117684 + MGP_CASTEiJ_P0065885 Hsdl2 protein_coding protein_coding MGP_CASTEiJ_T0065886.1 MGP_CASTEiJ_G0027476.1 mouse_genomes_project 4 58070569 58117059 + MGP_CASTEiJ_P0065886 Hsdl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065887.1 MGP_CASTEiJ_G0027476.1 mouse_genomes_project 4 58086088 58093244 + MGP_CASTEiJ_P0065887 Hsdl2 protein_coding protein_coding MGP_CASTEiJ_T0014033.1 MGP_CASTEiJ_G0012196.1 mouse_genomes_project 4 32207044 32207712 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067600.1 MGP_CASTEiJ_G0027841.1 mouse_genomes_project 4 118607231 118608480 + MGP_CASTEiJ_P0067600 Cited4 protein_coding protein_coding MGP_CASTEiJ_T0004335.1 MGP_CASTEiJ_G0003784.1 mouse_genomes_project 4 59478014 59484034 - Gm11209 antisense antisense MGP_CASTEiJ_T0099850.1 MGP_CASTEiJ_G0036763.1 mouse_genomes_project 4 148781794 148781898 - Gm24381 snRNA snRNA MGP_CASTEiJ_T0069956.1 MGP_CASTEiJ_G0028334.1 mouse_genomes_project 4 155439791 155442511 - MGP_CASTEiJ_P0069956 Mmp23 protein_coding protein_coding MGP_CASTEiJ_T0069957.1 MGP_CASTEiJ_G0028334.1 mouse_genomes_project 4 155439793 155441152 - Mmp23 protein_coding retained_intron MGP_CASTEiJ_T0069958.1 MGP_CASTEiJ_G0028334.1 mouse_genomes_project 4 155441379 155442335 - Mmp23 protein_coding retained_intron MGP_CASTEiJ_T0069959.1 MGP_CASTEiJ_G0028334.1 mouse_genomes_project 4 155441396 155442020 - Mmp23 protein_coding retained_intron MGP_CASTEiJ_T0007667.1 MGP_CASTEiJ_G0006284.1 mouse_genomes_project 4 55662890 55670143 + Gm12536 lincRNA lincRNA MGP_CASTEiJ_T0064906.1 MGP_CASTEiJ_G0027264.1 mouse_genomes_project 4 29829014 29847476 + Casp8ap2 protein_coding processed_transcript MGP_CASTEiJ_T0064907.1 MGP_CASTEiJ_G0027264.1 mouse_genomes_project 4 29829033 29855314 + Casp8ap2 protein_coding processed_transcript MGP_CASTEiJ_T0064908.1 MGP_CASTEiJ_G0027264.1 mouse_genomes_project 4 29829036 29868779 + MGP_CASTEiJ_P0064908 Casp8ap2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064909.1 MGP_CASTEiJ_G0027264.1 mouse_genomes_project 4 29829036 29869136 + MGP_CASTEiJ_P0064909 Casp8ap2 protein_coding protein_coding MGP_CASTEiJ_T0064910.1 MGP_CASTEiJ_G0027264.1 mouse_genomes_project 4 29829041 29869136 + MGP_CASTEiJ_P0064910 Casp8ap2 protein_coding protein_coding MGP_CASTEiJ_T0064911.1 MGP_CASTEiJ_G0027264.1 mouse_genomes_project 4 29838355 29869136 + MGP_CASTEiJ_P0064911 Casp8ap2 protein_coding protein_coding MGP_CASTEiJ_T0070122.1 MGP_CASTEiJ_G0028367.1 mouse_genomes_project 4 156031654 156040419 + MGP_CASTEiJ_P0070122 Noc2l protein_coding protein_coding MGP_CASTEiJ_T0070123.1 MGP_CASTEiJ_G0028367.1 mouse_genomes_project 4 156031735 156040018 + MGP_CASTEiJ_P0070123 Noc2l protein_coding unknown_likely_coding MGP_CASTEiJ_T0014078.1 MGP_CASTEiJ_G0012241.1 mouse_genomes_project 4 50220280 50222597 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066265.1 MGP_CASTEiJ_G0027556.1 mouse_genomes_project 4 85562157 85593366 + Focad protein_coding retained_intron MGP_CASTEiJ_T0066266.1 MGP_CASTEiJ_G0027556.1 mouse_genomes_project 4 85562158 85875166 + MGP_CASTEiJ_P0066266 Focad protein_coding protein_coding MGP_CASTEiJ_T0066267.1 MGP_CASTEiJ_G0027556.1 mouse_genomes_project 4 85562173 85653416 + Focad protein_coding retained_intron MGP_CASTEiJ_T0066268.1 MGP_CASTEiJ_G0027556.1 mouse_genomes_project 4 85592852 85875164 + MGP_CASTEiJ_P0066268 Focad protein_coding protein_coding MGP_CASTEiJ_T0066269.1 MGP_CASTEiJ_G0027556.1 mouse_genomes_project 4 85595926 85623826 + Focad protein_coding retained_intron MGP_CASTEiJ_T0066270.1 MGP_CASTEiJ_G0027556.1 mouse_genomes_project 4 85770093 85796090 + Focad protein_coding retained_intron MGP_CASTEiJ_T0066271.1 MGP_CASTEiJ_G0027556.1 mouse_genomes_project 4 85815932 85875169 + Focad protein_coding retained_intron MGP_CASTEiJ_T0066273.1 MGP_CASTEiJ_G0027556.1 mouse_genomes_project 4 85862389 85871347 + Focad protein_coding processed_transcript MGP_CASTEiJ_T0066274.1 MGP_CASTEiJ_G0027556.1 mouse_genomes_project 4 85862604 85875171 + MGP_CASTEiJ_P0066274 Focad protein_coding protein_coding MGP_CASTEiJ_T0067134.1 MGP_CASTEiJ_G0027746.1 mouse_genomes_project 4 113674700 113684777 - Uqcrh protein_coding processed_transcript MGP_CASTEiJ_T0067135.1 MGP_CASTEiJ_G0027746.1 mouse_genomes_project 4 113674700 113684814 - MGP_CASTEiJ_P0067135 Uqcrh protein_coding protein_coding MGP_CASTEiJ_T0067136.1 MGP_CASTEiJ_G0027746.1 mouse_genomes_project 4 113674700 113684774 - MGP_CASTEiJ_P0067136 Uqcrh protein_coding protein_coding MGP_CASTEiJ_T0067137.1 MGP_CASTEiJ_G0027746.1 mouse_genomes_project 4 113674701 113679806 - Uqcrh protein_coding retained_intron MGP_CASTEiJ_T0067138.1 MGP_CASTEiJ_G0027746.1 mouse_genomes_project 4 113679828 113684802 - Uqcrh protein_coding retained_intron MGP_CASTEiJ_T0067596.1 MGP_CASTEiJ_G0027839.1 mouse_genomes_project 4 118469548 118501030 - MGP_CASTEiJ_P0067596 Ctps protein_coding unknown_likely_coding MGP_CASTEiJ_T0067597.1 MGP_CASTEiJ_G0027839.1 mouse_genomes_project 4 118470777 118473954 - Ctps protein_coding processed_transcript MGP_CASTEiJ_T0067598.1 MGP_CASTEiJ_G0027839.1 mouse_genomes_project 4 118470835 118477029 - Ctps protein_coding processed_transcript MGP_CASTEiJ_T0014086.1 MGP_CASTEiJ_G0012249.1 mouse_genomes_project 4 52084242 52084655 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068825.1 MGP_CASTEiJ_G0028099.1 mouse_genomes_project 4 135544428 135547217 + MGP_CASTEiJ_P0068825 4930549C01Rik protein_coding protein_coding MGP_CASTEiJ_T0069703.1 MGP_CASTEiJ_G0028295.1 mouse_genomes_project 4 151873585 151880415 + Rpl22 protein_coding processed_transcript MGP_CASTEiJ_T0069704.1 MGP_CASTEiJ_G0028295.1 mouse_genomes_project 4 151873696 151880419 + MGP_CASTEiJ_P0069704 Rpl22 protein_coding protein_coding MGP_CASTEiJ_T0069705.1 MGP_CASTEiJ_G0028295.1 mouse_genomes_project 4 151873710 151882002 + MGP_CASTEiJ_P0069705 Rpl22 protein_coding protein_coding MGP_CASTEiJ_T0069706.1 MGP_CASTEiJ_G0028295.1 mouse_genomes_project 4 151873712 151882001 + MGP_CASTEiJ_P0069706 Rpl22 protein_coding protein_coding MGP_CASTEiJ_T0069707.1 MGP_CASTEiJ_G0028295.1 mouse_genomes_project 4 151874918 151877911 + Rpl22 protein_coding processed_transcript MGP_CASTEiJ_T0069708.1 MGP_CASTEiJ_G0028295.1 mouse_genomes_project 4 151874977 151878140 + Rpl22 protein_coding processed_transcript MGP_CASTEiJ_T0069709.1 MGP_CASTEiJ_G0028295.1 mouse_genomes_project 4 151875342 151880412 + Rpl22 protein_coding processed_transcript MGP_CASTEiJ_T0069710.1 MGP_CASTEiJ_G0028295.1 mouse_genomes_project 4 151875419 151880413 + Rpl22 protein_coding processed_transcript MGP_CASTEiJ_T0069295.1 MGP_CASTEiJ_G0028223.1 mouse_genomes_project 4 146968314 146969624 + MGP_CASTEiJ_P0069295 Fv1 protein_coding protein_coding MGP_CASTEiJ_T0068760.1 MGP_CASTEiJ_G0028086.1 mouse_genomes_project 4 134842360 134856024 - MGP_CASTEiJ_P0068760 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068761.1 MGP_CASTEiJ_G0028086.1 mouse_genomes_project 4 134842831 134854745 - protein_coding processed_transcript MGP_CASTEiJ_T0068762.1 MGP_CASTEiJ_G0028086.1 mouse_genomes_project 4 134843159 134846913 - protein_coding retained_intron MGP_CASTEiJ_T0068763.1 MGP_CASTEiJ_G0028086.1 mouse_genomes_project 4 134843161 134855139 - MGP_CASTEiJ_P0068763 protein_coding protein_coding MGP_CASTEiJ_T0068764.1 MGP_CASTEiJ_G0028086.1 mouse_genomes_project 4 134843972 134855734 - MGP_CASTEiJ_P0068764 protein_coding protein_coding MGP_CASTEiJ_T0068765.1 MGP_CASTEiJ_G0028086.1 mouse_genomes_project 4 134846340 134855898 - protein_coding retained_intron MGP_CASTEiJ_T0068766.1 MGP_CASTEiJ_G0028086.1 mouse_genomes_project 4 134855230 134855904 - protein_coding processed_transcript MGP_CASTEiJ_T0004390.1 MGP_CASTEiJ_G0003823.1 mouse_genomes_project 4 116783452 116784110 - Gm12863 antisense antisense MGP_CASTEiJ_T0011248.1 MGP_CASTEiJ_G0009436.1 mouse_genomes_project 4 112676276 112676374 + Gm24045 misc_RNA misc_RNA MGP_CASTEiJ_T0004399.1 MGP_CASTEiJ_G0003830.1 mouse_genomes_project 4 121820869 121842370 - 1700121C08Rik antisense antisense MGP_CASTEiJ_T0067601.1 MGP_CASTEiJ_G0027842.1 mouse_genomes_project 4 118644027 118697410 - MGP_CASTEiJ_P0067601 Kcnq4 protein_coding protein_coding MGP_CASTEiJ_T0067602.1 MGP_CASTEiJ_G0027842.1 mouse_genomes_project 4 118663120 118698584 - Kcnq4 protein_coding processed_transcript MGP_CASTEiJ_T0004482.1 MGP_CASTEiJ_G0003895.1 mouse_genomes_project 4 154584747 154590058 - Gm13112 antisense antisense MGP_CASTEiJ_T0004483.1 MGP_CASTEiJ_G0003895.1 mouse_genomes_project 4 154585287 154592553 - Gm13112 antisense antisense MGP_CASTEiJ_T0069828.1 MGP_CASTEiJ_G0028314.1 mouse_genomes_project 4 154568757 154586020 + MGP_CASTEiJ_P0069828 protein_coding protein_coding MGP_CASTEiJ_T0069829.1 MGP_CASTEiJ_G0028314.1 mouse_genomes_project 4 154580856 154581939 + protein_coding processed_transcript MGP_CASTEiJ_T0069419.1 MGP_CASTEiJ_G0028247.1 mouse_genomes_project 4 148178551 148327394 - MGP_CASTEiJ_P0069419 Pex14 protein_coding protein_coding MGP_CASTEiJ_T0069420.1 MGP_CASTEiJ_G0028247.1 mouse_genomes_project 4 148181243 148327334 - Pex14 protein_coding retained_intron MGP_CASTEiJ_T0069421.1 MGP_CASTEiJ_G0028247.1 mouse_genomes_project 4 148201287 148327333 - Pex14 protein_coding processed_transcript MGP_CASTEiJ_T0069422.1 MGP_CASTEiJ_G0028247.1 mouse_genomes_project 4 148202038 148327327 - MGP_CASTEiJ_P0069422 Pex14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069423.1 MGP_CASTEiJ_G0028247.1 mouse_genomes_project 4 148235344 148327346 - Pex14 protein_coding processed_transcript MGP_CASTEiJ_T0065653.1 MGP_CASTEiJ_G0027415.1 mouse_genomes_project 4 46590010 46665675 + MGP_CASTEiJ_P0065653 protein_coding protein_coding MGP_CASTEiJ_T0065654.1 MGP_CASTEiJ_G0027415.1 mouse_genomes_project 4 46609087 46665013 + MGP_CASTEiJ_P0065654 protein_coding protein_coding MGP_CASTEiJ_T0065655.1 MGP_CASTEiJ_G0027415.1 mouse_genomes_project 4 46637977 46662767 + MGP_CASTEiJ_P0065655 protein_coding protein_coding MGP_CASTEiJ_T0099770.1 MGP_CASTEiJ_G0036683.1 mouse_genomes_project 4 7874504 7874659 - Gm22940 snRNA snRNA MGP_CASTEiJ_T0065050.1 MGP_CASTEiJ_G0027298.1 mouse_genomes_project 4 38064939 38071263 + MGP_CASTEiJ_P0065050 Tmem215 protein_coding protein_coding MGP_CASTEiJ_T0065051.1 MGP_CASTEiJ_G0027298.1 mouse_genomes_project 4 38065889 38068438 + MGP_CASTEiJ_P0065051 Tmem215 protein_coding protein_coding MGP_CASTEiJ_T0068517.1 MGP_CASTEiJ_G0028036.1 mouse_genomes_project 4 132641876 132676633 - MGP_CASTEiJ_P0068517 Dhdds protein_coding protein_coding MGP_CASTEiJ_T0068518.1 MGP_CASTEiJ_G0028036.1 mouse_genomes_project 4 132641905 132676630 - MGP_CASTEiJ_P0068518 Dhdds protein_coding protein_coding MGP_CASTEiJ_T0068519.1 MGP_CASTEiJ_G0028036.1 mouse_genomes_project 4 132641906 132653502 - Dhdds protein_coding processed_transcript MGP_CASTEiJ_T0068520.1 MGP_CASTEiJ_G0028036.1 mouse_genomes_project 4 132641911 132676136 - Dhdds protein_coding processed_transcript MGP_CASTEiJ_T0068521.1 MGP_CASTEiJ_G0028036.1 mouse_genomes_project 4 132642023 132676614 - Dhdds protein_coding processed_transcript MGP_CASTEiJ_T0068522.1 MGP_CASTEiJ_G0028036.1 mouse_genomes_project 4 132643039 132676614 - MGP_CASTEiJ_P0068522 Dhdds protein_coding protein_coding MGP_CASTEiJ_T0068523.1 MGP_CASTEiJ_G0028036.1 mouse_genomes_project 4 132643767 132668360 - MGP_CASTEiJ_P0068523 Dhdds protein_coding protein_coding MGP_CASTEiJ_T0068524.1 MGP_CASTEiJ_G0028036.1 mouse_genomes_project 4 132643795 132676136 - MGP_CASTEiJ_P0068524 Dhdds protein_coding protein_coding MGP_CASTEiJ_T0068525.1 MGP_CASTEiJ_G0028036.1 mouse_genomes_project 4 132643827 132676136 - MGP_CASTEiJ_P0068525 Dhdds protein_coding protein_coding MGP_CASTEiJ_T0068526.1 MGP_CASTEiJ_G0028036.1 mouse_genomes_project 4 132644089 132676660 - MGP_CASTEiJ_P0068526 Dhdds protein_coding protein_coding MGP_CASTEiJ_T0068527.1 MGP_CASTEiJ_G0028036.1 mouse_genomes_project 4 132653089 132671075 - Dhdds protein_coding processed_transcript MGP_CASTEiJ_T0014220.1 MGP_CASTEiJ_G0012383.1 mouse_genomes_project 4 105257467 105258483 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007806.1 MGP_CASTEiJ_G0006386.1 mouse_genomes_project 4 136070657 136071675 - Gm13001 lincRNA lincRNA MGP_CASTEiJ_T0007785.1 MGP_CASTEiJ_G0006374.1 mouse_genomes_project 4 130144746 130160568 - Gm16080 lincRNA lincRNA MGP_CASTEiJ_T0069374.1 MGP_CASTEiJ_G0028243.1 mouse_genomes_project 4 147781771 147783635 + MGP_CASTEiJ_P0069374 Masp2 protein_coding protein_coding MGP_CASTEiJ_T0069375.1 MGP_CASTEiJ_G0028243.1 mouse_genomes_project 4 147781774 147793857 + MGP_CASTEiJ_P0069375 Masp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069376.1 MGP_CASTEiJ_G0028243.1 mouse_genomes_project 4 147781774 147793857 + MGP_CASTEiJ_P0069376 Masp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069377.1 MGP_CASTEiJ_G0028243.1 mouse_genomes_project 4 147781774 147793857 + MGP_CASTEiJ_P0069377 Masp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069378.1 MGP_CASTEiJ_G0028243.1 mouse_genomes_project 4 147781781 147793791 + MGP_CASTEiJ_P0069378 Masp2 protein_coding protein_coding MGP_CASTEiJ_T0069379.1 MGP_CASTEiJ_G0028243.1 mouse_genomes_project 4 147781785 147788484 + Masp2 protein_coding retained_intron MGP_CASTEiJ_T0069380.1 MGP_CASTEiJ_G0028243.1 mouse_genomes_project 4 147781792 147783635 + Masp2 protein_coding retained_intron MGP_CASTEiJ_T0014268.1 MGP_CASTEiJ_G0012431.1 mouse_genomes_project 4 119267553 119267798 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098943.1 MGP_CASTEiJ_G0035867.1 mouse_genomes_project 4 97818112 97819334 + Gm12701 sense_intronic sense_intronic MGP_CASTEiJ_T0066645.1 MGP_CASTEiJ_G0027650.1 mouse_genomes_project 4 104286469 104320227 - MGP_CASTEiJ_P0066645 Pcsk9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066646.1 MGP_CASTEiJ_G0027650.1 mouse_genomes_project 4 104297459 104320605 - MGP_CASTEiJ_P0066646 Pcsk9 protein_coding protein_coding MGP_CASTEiJ_T0066647.1 MGP_CASTEiJ_G0027650.1 mouse_genomes_project 4 104298476 104320186 - MGP_CASTEiJ_P0066647 Pcsk9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014066.1 MGP_CASTEiJ_G0012229.1 mouse_genomes_project 4 45110294 45110429 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004437.1 MGP_CASTEiJ_G0003861.1 mouse_genomes_project 4 140308235 140319329 - Gm13031 antisense antisense MGP_CASTEiJ_T0004452.1 MGP_CASTEiJ_G0003871.1 mouse_genomes_project 4 141645162 141648696 + Gm13062 antisense antisense MGP_CASTEiJ_T0065318.1 MGP_CASTEiJ_G0027347.1 mouse_genomes_project 4 41179509 41180606 - MGP_CASTEiJ_P0065318 Arhgef39 protein_coding protein_coding MGP_CASTEiJ_T0065319.1 MGP_CASTEiJ_G0027347.1 mouse_genomes_project 4 41179509 41183055 - MGP_CASTEiJ_P0065319 Arhgef39 protein_coding protein_coding MGP_CASTEiJ_T0065320.1 MGP_CASTEiJ_G0027347.1 mouse_genomes_project 4 41179513 41182979 - Arhgef39 protein_coding processed_transcript MGP_CASTEiJ_T0065321.1 MGP_CASTEiJ_G0027347.1 mouse_genomes_project 4 41179515 41180585 - Arhgef39 protein_coding processed_transcript MGP_CASTEiJ_T0065322.1 MGP_CASTEiJ_G0027347.1 mouse_genomes_project 4 41179891 41183021 - Arhgef39 protein_coding processed_transcript MGP_CASTEiJ_T0065323.1 MGP_CASTEiJ_G0027347.1 mouse_genomes_project 4 41180192 41182968 - MGP_CASTEiJ_P0065323 Arhgef39 protein_coding protein_coding MGP_CASTEiJ_T0065324.1 MGP_CASTEiJ_G0027347.1 mouse_genomes_project 4 41180591 41182475 - Arhgef39 protein_coding processed_transcript MGP_CASTEiJ_T0065325.1 MGP_CASTEiJ_G0027347.1 mouse_genomes_project 4 41180632 41182435 - Arhgef39 protein_coding processed_transcript MGP_CASTEiJ_T0065326.1 MGP_CASTEiJ_G0027347.1 mouse_genomes_project 4 41181091 41182971 - Arhgef39 protein_coding processed_transcript MGP_CASTEiJ_T0065327.1 MGP_CASTEiJ_G0027347.1 mouse_genomes_project 4 41182506 41183021 - Arhgef39 protein_coding processed_transcript MGP_CASTEiJ_T0014157.1 MGP_CASTEiJ_G0012320.1 mouse_genomes_project 4 80805731 80805994 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068551.1 MGP_CASTEiJ_G0028041.1 mouse_genomes_project 4 132793995 132821448 + MGP_CASTEiJ_P0068551 Ubxn11 protein_coding protein_coding MGP_CASTEiJ_T0068552.1 MGP_CASTEiJ_G0028041.1 mouse_genomes_project 4 132794085 132819698 + Ubxn11 protein_coding processed_transcript MGP_CASTEiJ_T0068553.1 MGP_CASTEiJ_G0028041.1 mouse_genomes_project 4 132794118 132820307 + Ubxn11 protein_coding processed_transcript MGP_CASTEiJ_T0068554.1 MGP_CASTEiJ_G0028041.1 mouse_genomes_project 4 132794130 132821297 + Ubxn11 protein_coding processed_transcript MGP_CASTEiJ_T0068555.1 MGP_CASTEiJ_G0028041.1 mouse_genomes_project 4 132794133 132810747 + MGP_CASTEiJ_P0068555 Ubxn11 protein_coding protein_coding MGP_CASTEiJ_T0068556.1 MGP_CASTEiJ_G0028041.1 mouse_genomes_project 4 132794134 132803029 + Ubxn11 protein_coding processed_transcript MGP_CASTEiJ_T0068557.1 MGP_CASTEiJ_G0028041.1 mouse_genomes_project 4 132801183 132807588 + Ubxn11 protein_coding processed_transcript MGP_CASTEiJ_T0068558.1 MGP_CASTEiJ_G0028041.1 mouse_genomes_project 4 132807168 132818131 + Ubxn11 protein_coding processed_transcript MGP_CASTEiJ_T0068559.1 MGP_CASTEiJ_G0028041.1 mouse_genomes_project 4 132818001 132821296 + Ubxn11 protein_coding processed_transcript MGP_CASTEiJ_T0068560.1 MGP_CASTEiJ_G0028041.1 mouse_genomes_project 4 132818583 132821022 + MGP_CASTEiJ_P0068560 Ubxn11 protein_coding protein_coding MGP_CASTEiJ_T0068561.1 MGP_CASTEiJ_G0028041.1 mouse_genomes_project 4 132820459 132821297 + Ubxn11 protein_coding processed_transcript MGP_CASTEiJ_T0065037.1 MGP_CASTEiJ_G0027295.1 mouse_genomes_project 4 37774117 37817736 - MGP_CASTEiJ_P0065037 Ddx58 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065038.1 MGP_CASTEiJ_G0027295.1 mouse_genomes_project 4 37779556 37784352 - Ddx58 protein_coding processed_transcript MGP_CASTEiJ_T0065039.1 MGP_CASTEiJ_G0027295.1 mouse_genomes_project 4 37779560 37797896 - Ddx58 protein_coding processed_transcript MGP_CASTEiJ_T0065040.1 MGP_CASTEiJ_G0027295.1 mouse_genomes_project 4 37780634 37817845 - MGP_CASTEiJ_P0065040 Ddx58 protein_coding protein_coding MGP_CASTEiJ_T0065041.1 MGP_CASTEiJ_G0027295.1 mouse_genomes_project 4 37784597 37789690 - Ddx58 protein_coding processed_transcript MGP_CASTEiJ_T0065042.1 MGP_CASTEiJ_G0027295.1 mouse_genomes_project 4 37784679 37817717 - MGP_CASTEiJ_P0065042 Ddx58 protein_coding protein_coding MGP_CASTEiJ_T0065043.1 MGP_CASTEiJ_G0027295.1 mouse_genomes_project 4 37800730 37817772 - Ddx58 protein_coding processed_transcript MGP_CASTEiJ_T0065044.1 MGP_CASTEiJ_G0027295.1 mouse_genomes_project 4 37801175 37817739 - Ddx58 protein_coding processed_transcript MGP_CASTEiJ_T0065045.1 MGP_CASTEiJ_G0027295.1 mouse_genomes_project 4 37804274 37806083 - Ddx58 protein_coding processed_transcript MGP_CASTEiJ_T0065046.1 MGP_CASTEiJ_G0027295.1 mouse_genomes_project 4 37804785 37817842 - Ddx58 protein_coding processed_transcript MGP_CASTEiJ_T0014303.1 MGP_CASTEiJ_G0012466.1 mouse_genomes_project 4 133220197 133220947 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065939.1 MGP_CASTEiJ_G0027492.1 mouse_genomes_project 4 59369349 59371775 - MGP_CASTEiJ_P0065939 Pole3 protein_coding protein_coding MGP_CASTEiJ_T0065940.1 MGP_CASTEiJ_G0027492.1 mouse_genomes_project 4 59371035 59371745 - Pole3 protein_coding retained_intron MGP_CASTEiJ_T0065717.1 MGP_CASTEiJ_G0027438.1 mouse_genomes_project 4 51645790 51761007 + MGP_CASTEiJ_P0065717 Slc44a1 protein_coding protein_coding MGP_CASTEiJ_T0065718.1 MGP_CASTEiJ_G0027438.1 mouse_genomes_project 4 51645790 51833828 + MGP_CASTEiJ_P0065718 Slc44a1 protein_coding protein_coding MGP_CASTEiJ_T0065719.1 MGP_CASTEiJ_G0027438.1 mouse_genomes_project 4 51646048 51739473 + Slc44a1 protein_coding processed_transcript MGP_CASTEiJ_T0065720.1 MGP_CASTEiJ_G0027438.1 mouse_genomes_project 4 51646061 51778163 + MGP_CASTEiJ_P0065720 Slc44a1 protein_coding protein_coding MGP_CASTEiJ_T0065721.1 MGP_CASTEiJ_G0027438.1 mouse_genomes_project 4 51646061 51773818 + MGP_CASTEiJ_P0065721 Slc44a1 protein_coding protein_coding MGP_CASTEiJ_T0065722.1 MGP_CASTEiJ_G0027438.1 mouse_genomes_project 4 51807908 51833335 + Slc44a1 protein_coding processed_transcript MGP_CASTEiJ_T0068906.1 MGP_CASTEiJ_G0028118.1 mouse_genomes_project 4 137044628 137172935 + MGP_CASTEiJ_P0068906 Eif4g3 protein_coding protein_coding MGP_CASTEiJ_T0068907.1 MGP_CASTEiJ_G0028118.1 mouse_genomes_project 4 137044628 137183745 + MGP_CASTEiJ_P0068907 Eif4g3 protein_coding protein_coding MGP_CASTEiJ_T0068908.1 MGP_CASTEiJ_G0028118.1 mouse_genomes_project 4 137044628 137160254 + MGP_CASTEiJ_P0068908 Eif4g3 protein_coding protein_coding MGP_CASTEiJ_T0068909.1 MGP_CASTEiJ_G0028118.1 mouse_genomes_project 4 137045062 137265687 + MGP_CASTEiJ_P0068909 Eif4g3 protein_coding protein_coding MGP_CASTEiJ_T0068910.1 MGP_CASTEiJ_G0028118.1 mouse_genomes_project 4 137045062 137265687 + MGP_CASTEiJ_P0068910 Eif4g3 protein_coding protein_coding MGP_CASTEiJ_T0068911.1 MGP_CASTEiJ_G0028118.1 mouse_genomes_project 4 137045082 137045766 + Eif4g3 protein_coding processed_transcript MGP_CASTEiJ_T0068912.1 MGP_CASTEiJ_G0028118.1 mouse_genomes_project 4 137045090 137111489 + Eif4g3 protein_coding processed_transcript MGP_CASTEiJ_T0068913.1 MGP_CASTEiJ_G0028118.1 mouse_genomes_project 4 137045119 137264768 + MGP_CASTEiJ_P0068913 Eif4g3 protein_coding protein_coding MGP_CASTEiJ_T0068914.1 MGP_CASTEiJ_G0028118.1 mouse_genomes_project 4 137045554 137265696 + MGP_CASTEiJ_P0068914 Eif4g3 protein_coding protein_coding MGP_CASTEiJ_T0068915.1 MGP_CASTEiJ_G0028118.1 mouse_genomes_project 4 137056747 137158229 + MGP_CASTEiJ_P0068915 Eif4g3 protein_coding protein_coding MGP_CASTEiJ_T0068916.1 MGP_CASTEiJ_G0028118.1 mouse_genomes_project 4 137209047 137267113 + MGP_CASTEiJ_P0068916 Eif4g3 protein_coding protein_coding MGP_CASTEiJ_T0068917.1 MGP_CASTEiJ_G0028118.1 mouse_genomes_project 4 137236850 137267113 + Eif4g3 protein_coding processed_transcript MGP_CASTEiJ_T0068918.1 MGP_CASTEiJ_G0028118.1 mouse_genomes_project 4 137239501 137247371 + Eif4g3 protein_coding retained_intron MGP_CASTEiJ_T0068919.1 MGP_CASTEiJ_G0028118.1 mouse_genomes_project 4 137243419 137247149 + Eif4g3 protein_coding processed_transcript MGP_CASTEiJ_T0068920.1 MGP_CASTEiJ_G0028118.1 mouse_genomes_project 4 137260322 137262052 + Eif4g3 protein_coding processed_transcript MGP_CASTEiJ_T0067145.1 MGP_CASTEiJ_G0027748.1 mouse_genomes_project 4 113705415 113711193 - Rad54l protein_coding processed_transcript MGP_CASTEiJ_T0067146.1 MGP_CASTEiJ_G0027748.1 mouse_genomes_project 4 113708301 113734418 - MGP_CASTEiJ_P0067146 Rad54l protein_coding unknown_likely_coding MGP_CASTEiJ_T0067147.1 MGP_CASTEiJ_G0027748.1 mouse_genomes_project 4 113720890 113733655 - Rad54l protein_coding processed_transcript MGP_CASTEiJ_T0067148.1 MGP_CASTEiJ_G0027748.1 mouse_genomes_project 4 113722187 113723687 - Rad54l protein_coding processed_transcript MGP_CASTEiJ_T0067149.1 MGP_CASTEiJ_G0027748.1 mouse_genomes_project 4 113728924 113734364 - Rad54l protein_coding processed_transcript MGP_CASTEiJ_T0065624.1 MGP_CASTEiJ_G0027408.1 mouse_genomes_project 4 45428875 45437677 + MGP_CASTEiJ_P0065624 protein_coding protein_coding MGP_CASTEiJ_T0065625.1 MGP_CASTEiJ_G0027408.1 mouse_genomes_project 4 45428981 45437279 + MGP_CASTEiJ_P0065625 protein_coding protein_coding MGP_CASTEiJ_T0065626.1 MGP_CASTEiJ_G0027408.1 mouse_genomes_project 4 45429025 45437245 + MGP_CASTEiJ_P0065626 protein_coding protein_coding MGP_CASTEiJ_T0065627.1 MGP_CASTEiJ_G0027408.1 mouse_genomes_project 4 45429165 45434941 + protein_coding retained_intron MGP_CASTEiJ_T0101021.1 MGP_CASTEiJ_G0037934.1 mouse_genomes_project 4 10923661 10923788 + Gm24908 snoRNA snoRNA MGP_CASTEiJ_T0065699.1 MGP_CASTEiJ_G0027430.1 mouse_genomes_project 4 50749303 50765576 + MGP_CASTEiJ_P0065699 Toporsl protein_coding protein_coding MGP_CASTEiJ_T0065700.1 MGP_CASTEiJ_G0027430.1 mouse_genomes_project 4 50760282 50765573 + MGP_CASTEiJ_P0065700 Toporsl protein_coding protein_coding MGP_CASTEiJ_T0068585.1 MGP_CASTEiJ_G0028048.1 mouse_genomes_project 4 132951774 132953186 + MGP_CASTEiJ_P0068585 E130218I03Rik protein_coding protein_coding MGP_CASTEiJ_T0068586.1 MGP_CASTEiJ_G0028048.1 mouse_genomes_project 4 132951875 132953986 + MGP_CASTEiJ_P0068586 E130218I03Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068587.1 MGP_CASTEiJ_G0028048.1 mouse_genomes_project 4 132951875 132953982 + MGP_CASTEiJ_P0068587 E130218I03Rik protein_coding protein_coding MGP_CASTEiJ_T0068588.1 MGP_CASTEiJ_G0028048.1 mouse_genomes_project 4 132951888 132953102 + MGP_CASTEiJ_P0068588 E130218I03Rik protein_coding protein_coding MGP_CASTEiJ_T0068589.1 MGP_CASTEiJ_G0028048.1 mouse_genomes_project 4 132951888 132953425 + MGP_CASTEiJ_P0068589 E130218I03Rik protein_coding protein_coding MGP_CASTEiJ_T0068590.1 MGP_CASTEiJ_G0028048.1 mouse_genomes_project 4 132951889 132953665 + MGP_CASTEiJ_P0068590 E130218I03Rik protein_coding protein_coding MGP_CASTEiJ_T0068591.1 MGP_CASTEiJ_G0028048.1 mouse_genomes_project 4 132951890 132953632 + MGP_CASTEiJ_P0068591 E130218I03Rik protein_coding protein_coding MGP_CASTEiJ_T0068592.1 MGP_CASTEiJ_G0028048.1 mouse_genomes_project 4 132952095 132953390 + E130218I03Rik protein_coding processed_transcript MGP_CASTEiJ_T0065637.1 MGP_CASTEiJ_G0027411.1 mouse_genomes_project 4 46170500 46263505 - MGP_CASTEiJ_P0065637 Erp44 protein_coding protein_coding MGP_CASTEiJ_T0065638.1 MGP_CASTEiJ_G0027411.1 mouse_genomes_project 4 46171667 46174204 - Erp44 protein_coding processed_transcript MGP_CASTEiJ_T0065639.1 MGP_CASTEiJ_G0027411.1 mouse_genomes_project 4 46217164 46224409 - Erp44 protein_coding processed_transcript MGP_CASTEiJ_T0065640.1 MGP_CASTEiJ_G0027411.1 mouse_genomes_project 4 46219804 46263399 - Erp44 protein_coding processed_transcript MGP_CASTEiJ_T0070121.1 MGP_CASTEiJ_G0028366.1 mouse_genomes_project 4 156024252 156029274 - MGP_CASTEiJ_P0070121 Klhl17 protein_coding protein_coding MGP_CASTEiJ_T0067899.1 MGP_CASTEiJ_G0027917.1 mouse_genomes_project 4 124977025 125012678 + MGP_CASTEiJ_P0067899 AU040320 protein_coding protein_coding MGP_CASTEiJ_T0067900.1 MGP_CASTEiJ_G0027917.1 mouse_genomes_project 4 124977034 125012789 + MGP_CASTEiJ_P0067900 AU040320 protein_coding protein_coding MGP_CASTEiJ_T0067901.1 MGP_CASTEiJ_G0027917.1 mouse_genomes_project 4 124977036 125095319 + MGP_CASTEiJ_P0067901 AU040320 protein_coding protein_coding MGP_CASTEiJ_T0067902.1 MGP_CASTEiJ_G0027917.1 mouse_genomes_project 4 124977251 125095319 + MGP_CASTEiJ_P0067902 AU040320 protein_coding protein_coding MGP_CASTEiJ_T0067903.1 MGP_CASTEiJ_G0027917.1 mouse_genomes_project 4 124977251 125077909 + MGP_CASTEiJ_P0067903 AU040320 protein_coding protein_coding MGP_CASTEiJ_T0067904.1 MGP_CASTEiJ_G0027917.1 mouse_genomes_project 4 124977275 125012692 + MGP_CASTEiJ_P0067904 AU040320 protein_coding protein_coding MGP_CASTEiJ_T0067905.1 MGP_CASTEiJ_G0027917.1 mouse_genomes_project 4 124977295 125009081 + AU040320 protein_coding processed_transcript MGP_CASTEiJ_T0067906.1 MGP_CASTEiJ_G0027917.1 mouse_genomes_project 4 124977307 124978222 + AU040320 protein_coding processed_transcript MGP_CASTEiJ_T0067907.1 MGP_CASTEiJ_G0027917.1 mouse_genomes_project 4 125038087 125054110 + AU040320 protein_coding processed_transcript MGP_CASTEiJ_T0067908.1 MGP_CASTEiJ_G0027917.1 mouse_genomes_project 4 125057330 125063345 + AU040320 protein_coding processed_transcript MGP_CASTEiJ_T0067909.1 MGP_CASTEiJ_G0027917.1 mouse_genomes_project 4 125074086 125077097 + AU040320 protein_coding processed_transcript MGP_CASTEiJ_T0014184.1 MGP_CASTEiJ_G0012347.1 mouse_genomes_project 4 92007807 92008395 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101014.1 MGP_CASTEiJ_G0037927.1 mouse_genomes_project 4 402699 402767 - Gm24016 snoRNA snoRNA MGP_CASTEiJ_T0070119.1 MGP_CASTEiJ_G0028365.1 mouse_genomes_project 4 156015708 156024197 - MGP_CASTEiJ_P0070119 Plekhn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070120.1 MGP_CASTEiJ_G0028365.1 mouse_genomes_project 4 156016671 156023765 - MGP_CASTEiJ_P0070120 Plekhn1 protein_coding protein_coding MGP_CASTEiJ_T0014071.1 MGP_CASTEiJ_G0012234.1 mouse_genomes_project 4 47400306 47401309 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004472.1 MGP_CASTEiJ_G0003886.1 mouse_genomes_project 4 149941057 149942731 - Gm13091 antisense antisense MGP_CASTEiJ_T0014028.1 MGP_CASTEiJ_G0012191.1 mouse_genomes_project 4 30459119 30459310 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014082.1 MGP_CASTEiJ_G0012245.1 mouse_genomes_project 4 51074357 51078418 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068981.1 MGP_CASTEiJ_G0028137.1 mouse_genomes_project 4 138116828 138118077 + MGP_CASTEiJ_P0068981 Rnf186 protein_coding protein_coding MGP_CASTEiJ_T0065070.1 MGP_CASTEiJ_G0027302.1 mouse_genomes_project 4 38394713 38446147 - MGP_CASTEiJ_P0065070 B4galt1 protein_coding protein_coding MGP_CASTEiJ_T0065071.1 MGP_CASTEiJ_G0027302.1 mouse_genomes_project 4 38396537 38445996 - MGP_CASTEiJ_P0065071 B4galt1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065072.1 MGP_CASTEiJ_G0027302.1 mouse_genomes_project 4 38399270 38446147 - MGP_CASTEiJ_P0065072 B4galt1 protein_coding protein_coding MGP_CASTEiJ_T0007786.1 MGP_CASTEiJ_G0006375.1 mouse_genomes_project 4 130516626 130517411 + Gm13063 lincRNA lincRNA MGP_CASTEiJ_T0066859.1 MGP_CASTEiJ_G0027685.1 mouse_genomes_project 4 106372698 106389498 - MGP_CASTEiJ_P0066859 Fam159a protein_coding unknown_likely_coding MGP_CASTEiJ_T0066860.1 MGP_CASTEiJ_G0027685.1 mouse_genomes_project 4 106372715 106389471 - MGP_CASTEiJ_P0066860 Fam159a protein_coding protein_coding MGP_CASTEiJ_T0014077.1 MGP_CASTEiJ_G0012240.1 mouse_genomes_project 4 50036516 50037743 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013961.1 MGP_CASTEiJ_G0012124.1 mouse_genomes_project 4 11111456 11111906 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014241.1 MGP_CASTEiJ_G0012404.1 mouse_genomes_project 4 113050271 113050748 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066021.1 MGP_CASTEiJ_G0027511.1 mouse_genomes_project 4 62099470 62342912 + MGP_CASTEiJ_P0066021 Pappa protein_coding protein_coding MGP_CASTEiJ_T0066022.1 MGP_CASTEiJ_G0027511.1 mouse_genomes_project 4 62099812 62353880 + MGP_CASTEiJ_P0066022 Pappa protein_coding unknown_likely_coding MGP_CASTEiJ_T0066023.1 MGP_CASTEiJ_G0027511.1 mouse_genomes_project 4 62099813 62353880 + MGP_CASTEiJ_P0066023 Pappa protein_coding unknown_likely_coding MGP_CASTEiJ_T0007691.1 MGP_CASTEiJ_G0006306.1 mouse_genomes_project 4 82084217 82085028 + Gm12415 lincRNA lincRNA MGP_CASTEiJ_T0099831.1 MGP_CASTEiJ_G0036744.1 mouse_genomes_project 4 125550450 125550553 - Gm22221 snRNA snRNA MGP_CASTEiJ_T0067117.1 MGP_CASTEiJ_G0027743.1 mouse_genomes_project 4 113499394 113509963 - MGP_CASTEiJ_P0067117 Dmbx1 protein_coding protein_coding MGP_CASTEiJ_T0067118.1 MGP_CASTEiJ_G0027743.1 mouse_genomes_project 4 113499394 113526816 - MGP_CASTEiJ_P0067118 Dmbx1 protein_coding protein_coding MGP_CASTEiJ_T0067119.1 MGP_CASTEiJ_G0027743.1 mouse_genomes_project 4 113499395 113526816 - MGP_CASTEiJ_P0067119 Dmbx1 protein_coding protein_coding MGP_CASTEiJ_T0065572.1 MGP_CASTEiJ_G0027395.1 mouse_genomes_project 4 44254064 44267381 - MGP_CASTEiJ_P0065572 Trmo protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065573.1 MGP_CASTEiJ_G0027395.1 mouse_genomes_project 4 44254531 44267385 - MGP_CASTEiJ_P0065573 Trmo protein_coding unknown_likely_coding MGP_CASTEiJ_T0065574.1 MGP_CASTEiJ_G0027395.1 mouse_genomes_project 4 44254539 44267386 - MGP_CASTEiJ_P0065574 Trmo protein_coding protein_coding MGP_CASTEiJ_T0065575.1 MGP_CASTEiJ_G0027395.1 mouse_genomes_project 4 44257402 44267400 - MGP_CASTEiJ_P0065575 Trmo protein_coding protein_coding MGP_CASTEiJ_T0065576.1 MGP_CASTEiJ_G0027395.1 mouse_genomes_project 4 44257479 44267379 - MGP_CASTEiJ_P0065576 Trmo protein_coding unknown_likely_coding MGP_CASTEiJ_T0065776.1 MGP_CASTEiJ_G0027452.1 mouse_genomes_project 4 55200458 55286080 - MGP_CASTEiJ_P0065776 Tmem245 protein_coding protein_coding MGP_CASTEiJ_T0065777.1 MGP_CASTEiJ_G0027452.1 mouse_genomes_project 4 55211851 55276553 - Tmem245 protein_coding processed_transcript MGP_CASTEiJ_T0065778.1 MGP_CASTEiJ_G0027452.1 mouse_genomes_project 4 55211851 55260564 - MGP_CASTEiJ_P0065778 Tmem245 protein_coding protein_coding MGP_CASTEiJ_T0065779.1 MGP_CASTEiJ_G0027452.1 mouse_genomes_project 4 55212222 55286054 - MGP_CASTEiJ_P0065779 Tmem245 protein_coding protein_coding MGP_CASTEiJ_T0065780.1 MGP_CASTEiJ_G0027452.1 mouse_genomes_project 4 55217573 55286067 - Tmem245 protein_coding processed_transcript MGP_CASTEiJ_T0098944.1 MGP_CASTEiJ_G0035868.1 mouse_genomes_project 4 106526101 106529160 + Gm12737 sense_intronic sense_intronic MGP_CASTEiJ_T0007707.1 MGP_CASTEiJ_G0006319.1 mouse_genomes_project 4 96823704 96839630 - Gm12681 lincRNA lincRNA MGP_CASTEiJ_T0066288.1 MGP_CASTEiJ_G0027565.1 mouse_genomes_project 4 86140974 86141873 - MGP_CASTEiJ_P0066288 Ifna2 protein_coding protein_coding MGP_CASTEiJ_T0014203.1 MGP_CASTEiJ_G0012366.1 mouse_genomes_project 4 98279237 98279689 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066798.1 MGP_CASTEiJ_G0027676.1 mouse_genomes_project 4 105841113 105850715 + MGP_CASTEiJ_P0066798 0610037L13Rik protein_coding protein_coding MGP_CASTEiJ_T0066799.1 MGP_CASTEiJ_G0027676.1 mouse_genomes_project 4 105841125 105848317 + MGP_CASTEiJ_P0066799 0610037L13Rik protein_coding protein_coding MGP_CASTEiJ_T0066800.1 MGP_CASTEiJ_G0027676.1 mouse_genomes_project 4 105841149 105848599 + 0610037L13Rik protein_coding processed_transcript MGP_CASTEiJ_T0066801.1 MGP_CASTEiJ_G0027676.1 mouse_genomes_project 4 105841163 105848455 + MGP_CASTEiJ_P0066801 0610037L13Rik protein_coding protein_coding MGP_CASTEiJ_T0066802.1 MGP_CASTEiJ_G0027676.1 mouse_genomes_project 4 105841166 105847213 + MGP_CASTEiJ_P0066802 0610037L13Rik protein_coding protein_coding MGP_CASTEiJ_T0066803.1 MGP_CASTEiJ_G0027676.1 mouse_genomes_project 4 105841169 105846688 + MGP_CASTEiJ_P0066803 0610037L13Rik protein_coding protein_coding MGP_CASTEiJ_T0066804.1 MGP_CASTEiJ_G0027676.1 mouse_genomes_project 4 105841199 105848455 + MGP_CASTEiJ_P0066804 0610037L13Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066805.1 MGP_CASTEiJ_G0027676.1 mouse_genomes_project 4 105841200 105849138 + MGP_CASTEiJ_P0066805 0610037L13Rik protein_coding protein_coding MGP_CASTEiJ_T0066806.1 MGP_CASTEiJ_G0027676.1 mouse_genomes_project 4 105841209 105843314 + MGP_CASTEiJ_P0066806 0610037L13Rik protein_coding protein_coding MGP_CASTEiJ_T0066807.1 MGP_CASTEiJ_G0027676.1 mouse_genomes_project 4 105841420 105848501 + 0610037L13Rik protein_coding processed_transcript MGP_CASTEiJ_T0066808.1 MGP_CASTEiJ_G0027676.1 mouse_genomes_project 4 105841528 105848394 + 0610037L13Rik protein_coding processed_transcript MGP_CASTEiJ_T0066809.1 MGP_CASTEiJ_G0027676.1 mouse_genomes_project 4 105841541 105848455 + 0610037L13Rik protein_coding processed_transcript MGP_CASTEiJ_T0066810.1 MGP_CASTEiJ_G0027676.1 mouse_genomes_project 4 105844486 105848390 + 0610037L13Rik protein_coding retained_intron MGP_CASTEiJ_T0066811.1 MGP_CASTEiJ_G0027676.1 mouse_genomes_project 4 105844682 105848455 + MGP_CASTEiJ_P0066811 0610037L13Rik protein_coding protein_coding MGP_CASTEiJ_T0066247.1 MGP_CASTEiJ_G0027554.1 mouse_genomes_project 4 84391390 84675822 - MGP_CASTEiJ_P0066247 Slc24a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066248.1 MGP_CASTEiJ_G0027554.1 mouse_genomes_project 4 84409960 84675940 - MGP_CASTEiJ_P0066248 Slc24a2 protein_coding protein_coding MGP_CASTEiJ_T0066249.1 MGP_CASTEiJ_G0027554.1 mouse_genomes_project 4 84409965 84673415 - MGP_CASTEiJ_P0066249 Slc24a2 protein_coding protein_coding MGP_CASTEiJ_T0066250.1 MGP_CASTEiJ_G0027554.1 mouse_genomes_project 4 84418032 84673329 - MGP_CASTEiJ_P0066250 Slc24a2 protein_coding protein_coding MGP_CASTEiJ_T0066251.1 MGP_CASTEiJ_G0027554.1 mouse_genomes_project 4 84418032 84673325 - MGP_CASTEiJ_P0066251 Slc24a2 protein_coding protein_coding MGP_CASTEiJ_T0066252.1 MGP_CASTEiJ_G0027554.1 mouse_genomes_project 4 84424448 84443704 - Slc24a2 protein_coding processed_transcript MGP_CASTEiJ_T0066253.1 MGP_CASTEiJ_G0027554.1 mouse_genomes_project 4 84464241 84619846 - MGP_CASTEiJ_P0066253 Slc24a2 protein_coding protein_coding MGP_CASTEiJ_T0066254.1 MGP_CASTEiJ_G0027554.1 mouse_genomes_project 4 84510935 84675886 - Slc24a2 protein_coding processed_transcript MGP_CASTEiJ_T0066255.1 MGP_CASTEiJ_G0027554.1 mouse_genomes_project 4 84511323 84675885 - Slc24a2 protein_coding processed_transcript MGP_CASTEiJ_T0066256.1 MGP_CASTEiJ_G0027554.1 mouse_genomes_project 4 84619344 84675930 - Slc24a2 protein_coding processed_transcript MGP_CASTEiJ_T0001370.1 MGP_CASTEiJ_G0001300.1 mouse_genomes_project 4 134271774 134272097 + TEC TEC MGP_CASTEiJ_T0010341.1 MGP_CASTEiJ_G0008529.1 mouse_genomes_project 4 136544910 136544995 + Mir7018 miRNA miRNA MGP_CASTEiJ_T0004476.1 MGP_CASTEiJ_G0003890.1 mouse_genomes_project 4 153614388 153617275 - BC039966 antisense antisense MGP_CASTEiJ_T0014026.1 MGP_CASTEiJ_G0012189.1 mouse_genomes_project 4 30233110 30233437 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068836.1 MGP_CASTEiJ_G0028103.1 mouse_genomes_project 4 135839408 135842684 - MGP_CASTEiJ_P0068836 C1qc protein_coding protein_coding MGP_CASTEiJ_T0068837.1 MGP_CASTEiJ_G0028103.1 mouse_genomes_project 4 135841256 135842495 - C1qc protein_coding processed_transcript MGP_CASTEiJ_T0069065.1 MGP_CASTEiJ_G0028157.1 mouse_genomes_project 4 140067299 140083778 - MGP_CASTEiJ_P0069065 Padi6 protein_coding protein_coding MGP_CASTEiJ_T0069066.1 MGP_CASTEiJ_G0028157.1 mouse_genomes_project 4 140072149 140072911 - Padi6 protein_coding processed_transcript MGP_CASTEiJ_T0069067.1 MGP_CASTEiJ_G0028157.1 mouse_genomes_project 4 140077218 140082782 - MGP_CASTEiJ_P0069067 Padi6 protein_coding protein_coding MGP_CASTEiJ_T0069081.1 MGP_CASTEiJ_G0028163.1 mouse_genomes_project 4 140353930 140371993 + MGP_CASTEiJ_P0069081 Atp13a2 protein_coding protein_coding MGP_CASTEiJ_T0069082.1 MGP_CASTEiJ_G0028163.1 mouse_genomes_project 4 140353957 140374228 + Atp13a2 protein_coding retained_intron MGP_CASTEiJ_T0069083.1 MGP_CASTEiJ_G0028163.1 mouse_genomes_project 4 140354047 140365279 + Atp13a2 protein_coding retained_intron MGP_CASTEiJ_T0069084.1 MGP_CASTEiJ_G0028163.1 mouse_genomes_project 4 140354065 140374234 + MGP_CASTEiJ_P0069084 Atp13a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069085.1 MGP_CASTEiJ_G0028163.1 mouse_genomes_project 4 140354069 140374234 + MGP_CASTEiJ_P0069085 Atp13a2 protein_coding protein_coding MGP_CASTEiJ_T0069086.1 MGP_CASTEiJ_G0028163.1 mouse_genomes_project 4 140362712 140368839 + Atp13a2 protein_coding processed_transcript MGP_CASTEiJ_T0069087.1 MGP_CASTEiJ_G0028163.1 mouse_genomes_project 4 140363322 140367778 + Atp13a2 protein_coding processed_transcript MGP_CASTEiJ_T0069088.1 MGP_CASTEiJ_G0028163.1 mouse_genomes_project 4 140367615 140368995 + Atp13a2 protein_coding processed_transcript MGP_CASTEiJ_T0069089.1 MGP_CASTEiJ_G0028163.1 mouse_genomes_project 4 140371321 140373621 + Atp13a2 protein_coding retained_intron MGP_CASTEiJ_T0014248.1 MGP_CASTEiJ_G0012411.1 mouse_genomes_project 4 114678046 114678686 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068789.1 MGP_CASTEiJ_G0028093.1 mouse_genomes_project 4 135186088 135191733 + MGP_CASTEiJ_P0068789 Zfp46 protein_coding protein_coding MGP_CASTEiJ_T0068790.1 MGP_CASTEiJ_G0028093.1 mouse_genomes_project 4 135186180 135191490 + MGP_CASTEiJ_P0068790 Zfp46 protein_coding protein_coding MGP_CASTEiJ_T0068791.1 MGP_CASTEiJ_G0028093.1 mouse_genomes_project 4 135186474 135187866 + Zfp46 protein_coding processed_transcript MGP_CASTEiJ_T0068792.1 MGP_CASTEiJ_G0028093.1 mouse_genomes_project 4 135187457 135195339 + MGP_CASTEiJ_P0068792 Zfp46 protein_coding protein_coding MGP_CASTEiJ_T0068793.1 MGP_CASTEiJ_G0028093.1 mouse_genomes_project 4 135187494 135191654 + MGP_CASTEiJ_P0068793 Zfp46 protein_coding protein_coding MGP_CASTEiJ_T0069907.1 MGP_CASTEiJ_G0028327.1 mouse_genomes_project 4 155142618 155155297 - Gabrd protein_coding processed_transcript MGP_CASTEiJ_T0069908.1 MGP_CASTEiJ_G0028327.1 mouse_genomes_project 4 155142618 155155362 - MGP_CASTEiJ_P0069908 Gabrd protein_coding protein_coding MGP_CASTEiJ_T0069909.1 MGP_CASTEiJ_G0028327.1 mouse_genomes_project 4 155146199 155155286 - Gabrd protein_coding processed_transcript MGP_CASTEiJ_T0065413.1 MGP_CASTEiJ_G0027369.1 mouse_genomes_project 4 41735455 41763361 + MGP_CASTEiJ_P0065413 Clta protein_coding protein_coding MGP_CASTEiJ_T0065414.1 MGP_CASTEiJ_G0027369.1 mouse_genomes_project 4 41743073 41763361 + MGP_CASTEiJ_P0065414 Clta protein_coding protein_coding MGP_CASTEiJ_T0065415.1 MGP_CASTEiJ_G0027369.1 mouse_genomes_project 4 41743078 41763360 + MGP_CASTEiJ_P0065415 Clta protein_coding protein_coding MGP_CASTEiJ_T0065416.1 MGP_CASTEiJ_G0027369.1 mouse_genomes_project 4 41743113 41763361 + MGP_CASTEiJ_P0065416 Clta protein_coding protein_coding MGP_CASTEiJ_T0065417.1 MGP_CASTEiJ_G0027369.1 mouse_genomes_project 4 41743113 41763361 + MGP_CASTEiJ_P0065417 Clta protein_coding protein_coding MGP_CASTEiJ_T0065418.1 MGP_CASTEiJ_G0027369.1 mouse_genomes_project 4 41743121 41763361 + MGP_CASTEiJ_P0065418 Clta protein_coding protein_coding MGP_CASTEiJ_T0064951.1 MGP_CASTEiJ_G0027274.1 mouse_genomes_project 4 30467288 30491447 + MGP_CASTEiJ_P0064951 Srsf12 protein_coding protein_coding MGP_CASTEiJ_T0064952.1 MGP_CASTEiJ_G0027274.1 mouse_genomes_project 4 30467603 30491457 + MGP_CASTEiJ_P0064952 Srsf12 protein_coding protein_coding MGP_CASTEiJ_T0069464.1 MGP_CASTEiJ_G0028254.1 mouse_genomes_project 4 148710994 148719401 - MGP_CASTEiJ_P0069464 Rbp7 protein_coding protein_coding MGP_CASTEiJ_T0069465.1 MGP_CASTEiJ_G0028254.1 mouse_genomes_project 4 148710994 148717848 - MGP_CASTEiJ_P0069465 Rbp7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069466.1 MGP_CASTEiJ_G0028254.1 mouse_genomes_project 4 148711010 148719393 - Rbp7 protein_coding processed_transcript MGP_CASTEiJ_T0011245.1 MGP_CASTEiJ_G0009433.1 mouse_genomes_project 4 99262220 99262490 + Gm22533 misc_RNA misc_RNA MGP_CASTEiJ_T0007642.1 MGP_CASTEiJ_G0006264.1 mouse_genomes_project 4 40689294 40698748 + Gm26881 lincRNA lincRNA MGP_CASTEiJ_T0014020.1 MGP_CASTEiJ_G0012183.1 mouse_genomes_project 4 29332959 29333396 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101087.1 MGP_CASTEiJ_G0038000.1 mouse_genomes_project 4 129240349 129240479 - Gm22660 snoRNA snoRNA MGP_CASTEiJ_T0004477.1 MGP_CASTEiJ_G0003891.1 mouse_genomes_project 4 153765036 153769924 + Trp73os antisense antisense MGP_CASTEiJ_T0070033.1 MGP_CASTEiJ_G0028348.1 mouse_genomes_project 4 155670526 155674612 - MGP_CASTEiJ_P0070033 Tas1r3 protein_coding protein_coding MGP_CASTEiJ_T0069225.1 MGP_CASTEiJ_G0028194.1 mouse_genomes_project 4 141557773 141676193 - MGP_CASTEiJ_P0069225 protein_coding protein_coding MGP_CASTEiJ_T0069226.1 MGP_CASTEiJ_G0028194.1 mouse_genomes_project 4 141567536 141573487 - protein_coding processed_transcript MGP_CASTEiJ_T0069227.1 MGP_CASTEiJ_G0028194.1 mouse_genomes_project 4 141573608 141619383 - MGP_CASTEiJ_P0069227 protein_coding protein_coding MGP_CASTEiJ_T0069228.1 MGP_CASTEiJ_G0028194.1 mouse_genomes_project 4 141598024 141705077 - MGP_CASTEiJ_P0069228 protein_coding protein_coding MGP_CASTEiJ_T0069229.1 MGP_CASTEiJ_G0028194.1 mouse_genomes_project 4 141598031 141676095 - MGP_CASTEiJ_P0069229 protein_coding protein_coding MGP_CASTEiJ_T0069230.1 MGP_CASTEiJ_G0028194.1 mouse_genomes_project 4 141598032 141606772 - protein_coding retained_intron MGP_CASTEiJ_T0069231.1 MGP_CASTEiJ_G0028194.1 mouse_genomes_project 4 141600329 141676193 - MGP_CASTEiJ_P0069231 protein_coding protein_coding MGP_CASTEiJ_T0069232.1 MGP_CASTEiJ_G0028194.1 mouse_genomes_project 4 141607076 141614919 - protein_coding retained_intron MGP_CASTEiJ_T0013959.1 MGP_CASTEiJ_G0012122.1 mouse_genomes_project 4 10082278 10082651 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065694.1 MGP_CASTEiJ_G0027429.1 mouse_genomes_project 4 50577385 50633120 + MGP_CASTEiJ_P0065694 Smc2 protein_coding protein_coding MGP_CASTEiJ_T0065695.1 MGP_CASTEiJ_G0027429.1 mouse_genomes_project 4 50577385 50633120 + MGP_CASTEiJ_P0065695 Smc2 protein_coding protein_coding MGP_CASTEiJ_T0065696.1 MGP_CASTEiJ_G0027429.1 mouse_genomes_project 4 50577394 50587581 + Smc2 protein_coding processed_transcript MGP_CASTEiJ_T0065697.1 MGP_CASTEiJ_G0027429.1 mouse_genomes_project 4 50577408 50591145 + Smc2 protein_coding processed_transcript MGP_CASTEiJ_T0065698.1 MGP_CASTEiJ_G0027429.1 mouse_genomes_project 4 50577411 50598460 + MGP_CASTEiJ_P0065698 Smc2 protein_coding protein_coding MGP_CASTEiJ_T0067462.1 MGP_CASTEiJ_G0027809.1 mouse_genomes_project 4 116508999 116509947 + MGP_CASTEiJ_P0067462 Olfr1339 protein_coding protein_coding MGP_CASTEiJ_T0065959.1 MGP_CASTEiJ_G0027495.1 mouse_genomes_project 4 59912672 59992883 + MGP_CASTEiJ_P0065959 Zfp618 protein_coding protein_coding MGP_CASTEiJ_T0065960.1 MGP_CASTEiJ_G0027495.1 mouse_genomes_project 4 59929203 60017026 + MGP_CASTEiJ_P0065960 Zfp618 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065961.1 MGP_CASTEiJ_G0027495.1 mouse_genomes_project 4 59929203 60017026 + MGP_CASTEiJ_P0065961 Zfp618 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065962.1 MGP_CASTEiJ_G0027495.1 mouse_genomes_project 4 59936079 60011632 + MGP_CASTEiJ_P0065962 Zfp618 protein_coding protein_coding MGP_CASTEiJ_T0065963.1 MGP_CASTEiJ_G0027495.1 mouse_genomes_project 4 59936079 60017295 + MGP_CASTEiJ_P0065963 Zfp618 protein_coding protein_coding MGP_CASTEiJ_T0065964.1 MGP_CASTEiJ_G0027495.1 mouse_genomes_project 4 59997538 59998568 + Zfp618 protein_coding processed_transcript MGP_CASTEiJ_T0014312.1 MGP_CASTEiJ_G0012475.1 mouse_genomes_project 4 134952238 134952472 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004368.1 MGP_CASTEiJ_G0003807.1 mouse_genomes_project 4 105283411 105285723 - Gm12869 antisense antisense MGP_CASTEiJ_T0069960.1 MGP_CASTEiJ_G0028335.1 mouse_genomes_project 4 155443802 155460588 - MGP_CASTEiJ_P0069960 Mib2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069961.1 MGP_CASTEiJ_G0028335.1 mouse_genomes_project 4 155443802 155461125 - MGP_CASTEiJ_P0069961 Mib2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069962.1 MGP_CASTEiJ_G0028335.1 mouse_genomes_project 4 155443802 155460588 - MGP_CASTEiJ_P0069962 Mib2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069963.1 MGP_CASTEiJ_G0028335.1 mouse_genomes_project 4 155443807 155447088 - Mib2 protein_coding processed_transcript MGP_CASTEiJ_T0069964.1 MGP_CASTEiJ_G0028335.1 mouse_genomes_project 4 155443812 155458942 - Mib2 protein_coding processed_transcript MGP_CASTEiJ_T0069965.1 MGP_CASTEiJ_G0028335.1 mouse_genomes_project 4 155443812 155460876 - MGP_CASTEiJ_P0069965 Mib2 protein_coding protein_coding MGP_CASTEiJ_T0069966.1 MGP_CASTEiJ_G0028335.1 mouse_genomes_project 4 155443813 155445836 - Mib2 protein_coding processed_transcript MGP_CASTEiJ_T0069967.1 MGP_CASTEiJ_G0028335.1 mouse_genomes_project 4 155444946 155445836 - Mib2 protein_coding processed_transcript MGP_CASTEiJ_T0069968.1 MGP_CASTEiJ_G0028335.1 mouse_genomes_project 4 155446051 155448689 - MGP_CASTEiJ_P0069968 Mib2 protein_coding protein_coding MGP_CASTEiJ_T0069969.1 MGP_CASTEiJ_G0028335.1 mouse_genomes_project 4 155446732 155447442 - Mib2 protein_coding processed_transcript MGP_CASTEiJ_T0069970.1 MGP_CASTEiJ_G0028335.1 mouse_genomes_project 4 155450489 155460875 - Mib2 protein_coding processed_transcript MGP_CASTEiJ_T0069971.1 MGP_CASTEiJ_G0028335.1 mouse_genomes_project 4 155458879 155460871 - Mib2 protein_coding processed_transcript MGP_CASTEiJ_T0102327.1 MGP_CASTEiJ_G0039052.1 mouse_genomes_project 4 119283152 119290430 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0066704.1 MGP_CASTEiJ_G0027661.1 mouse_genomes_project 4 104967809 104980500 - MGP_CASTEiJ_P0066704 Mrpl37 protein_coding protein_coding MGP_CASTEiJ_T0066705.1 MGP_CASTEiJ_G0027661.1 mouse_genomes_project 4 104967820 104971837 - Mrpl37 protein_coding retained_intron MGP_CASTEiJ_T0066706.1 MGP_CASTEiJ_G0027661.1 mouse_genomes_project 4 104967903 104978421 - Mrpl37 protein_coding processed_transcript MGP_CASTEiJ_T0066707.1 MGP_CASTEiJ_G0027661.1 mouse_genomes_project 4 104967910 104980452 - Mrpl37 protein_coding processed_transcript MGP_CASTEiJ_T0066708.1 MGP_CASTEiJ_G0027661.1 mouse_genomes_project 4 104978046 104978989 - Mrpl37 protein_coding retained_intron MGP_CASTEiJ_T0014328.1 MGP_CASTEiJ_G0012491.1 mouse_genomes_project 4 145172983 145173077 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101037.1 MGP_CASTEiJ_G0037950.1 mouse_genomes_project 4 44386741 44386871 + Gm22247 snoRNA snoRNA MGP_CASTEiJ_T0010332.1 MGP_CASTEiJ_G0008520.1 mouse_genomes_project 4 131991380 131991469 + Mir5122 miRNA miRNA MGP_CASTEiJ_T0101083.1 MGP_CASTEiJ_G0037996.1 mouse_genomes_project 4 125086220 125086353 - Gm25604 snoRNA snoRNA MGP_CASTEiJ_T0064869.1 MGP_CASTEiJ_G0027257.1 mouse_genomes_project 4 22090192 22130126 - Ufl1 protein_coding retained_intron MGP_CASTEiJ_T0064870.1 MGP_CASTEiJ_G0027257.1 mouse_genomes_project 4 22091419 22130220 - MGP_CASTEiJ_P0064870 Ufl1 protein_coding protein_coding MGP_CASTEiJ_T0064871.1 MGP_CASTEiJ_G0027257.1 mouse_genomes_project 4 22110893 22130155 - MGP_CASTEiJ_P0064871 Ufl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064872.1 MGP_CASTEiJ_G0027257.1 mouse_genomes_project 4 22114884 22130114 - Ufl1 protein_coding processed_transcript MGP_CASTEiJ_T0069009.1 MGP_CASTEiJ_G0028144.1 mouse_genomes_project 4 138481143 138490405 + MGP_CASTEiJ_P0069009 Akr7a5 protein_coding protein_coding MGP_CASTEiJ_T0069010.1 MGP_CASTEiJ_G0028144.1 mouse_genomes_project 4 138488560 138489389 + Akr7a5 protein_coding processed_transcript MGP_CASTEiJ_T0067232.1 MGP_CASTEiJ_G0027764.1 mouse_genomes_project 4 114365944 114460917 + MGP_CASTEiJ_P0067232 Tesk2 protein_coding protein_coding MGP_CASTEiJ_T0067233.1 MGP_CASTEiJ_G0027764.1 mouse_genomes_project 4 114365965 114462632 + MGP_CASTEiJ_P0067233 Tesk2 protein_coding protein_coding MGP_CASTEiJ_T0067234.1 MGP_CASTEiJ_G0027764.1 mouse_genomes_project 4 114388800 114460777 + MGP_CASTEiJ_P0067234 Tesk2 protein_coding protein_coding MGP_CASTEiJ_T0067235.1 MGP_CASTEiJ_G0027764.1 mouse_genomes_project 4 114426750 114458934 + Tesk2 protein_coding processed_transcript MGP_CASTEiJ_T0004479.1 MGP_CASTEiJ_G0003893.1 mouse_genomes_project 4 154319158 154322164 + Gm13134 antisense antisense MGP_CASTEiJ_T0004480.1 MGP_CASTEiJ_G0003893.1 mouse_genomes_project 4 154319276 154320666 + Gm13134 antisense antisense MGP_CASTEiJ_T0065399.1 MGP_CASTEiJ_G0027360.1 mouse_genomes_project 4 41398224 41404033 - MGP_CASTEiJ_P0065399 Olfr70 protein_coding protein_coding MGP_CASTEiJ_T0064529.1 MGP_CASTEiJ_G0027180.1 mouse_genomes_project 4 515211 519865 + MGP_CASTEiJ_P0064529 Chchd7 protein_coding protein_coding MGP_CASTEiJ_T0064530.1 MGP_CASTEiJ_G0027180.1 mouse_genomes_project 4 515211 519860 + MGP_CASTEiJ_P0064530 Chchd7 protein_coding protein_coding MGP_CASTEiJ_T0064531.1 MGP_CASTEiJ_G0027180.1 mouse_genomes_project 4 515213 519809 + MGP_CASTEiJ_P0064531 Chchd7 protein_coding protein_coding MGP_CASTEiJ_T0064532.1 MGP_CASTEiJ_G0027180.1 mouse_genomes_project 4 515237 519858 + MGP_CASTEiJ_P0064532 Chchd7 protein_coding protein_coding MGP_CASTEiJ_T0064533.1 MGP_CASTEiJ_G0027180.1 mouse_genomes_project 4 515237 519865 + MGP_CASTEiJ_P0064533 Chchd7 protein_coding protein_coding MGP_CASTEiJ_T0064534.1 MGP_CASTEiJ_G0027180.1 mouse_genomes_project 4 515237 527355 + MGP_CASTEiJ_P0064534 Chchd7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064535.1 MGP_CASTEiJ_G0027180.1 mouse_genomes_project 4 515237 519865 + MGP_CASTEiJ_P0064535 Chchd7 protein_coding protein_coding MGP_CASTEiJ_T0064536.1 MGP_CASTEiJ_G0027180.1 mouse_genomes_project 4 515237 519387 + MGP_CASTEiJ_P0064536 Chchd7 protein_coding protein_coding MGP_CASTEiJ_T0064537.1 MGP_CASTEiJ_G0027180.1 mouse_genomes_project 4 515243 519841 + MGP_CASTEiJ_P0064537 Chchd7 protein_coding protein_coding MGP_CASTEiJ_T0064538.1 MGP_CASTEiJ_G0027180.1 mouse_genomes_project 4 515366 519743 + MGP_CASTEiJ_P0064538 Chchd7 protein_coding protein_coding MGP_CASTEiJ_T0064539.1 MGP_CASTEiJ_G0027180.1 mouse_genomes_project 4 515744 517751 + Chchd7 protein_coding retained_intron MGP_CASTEiJ_T0064540.1 MGP_CASTEiJ_G0027180.1 mouse_genomes_project 4 515822 519863 + MGP_CASTEiJ_P0064540 Chchd7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064541.1 MGP_CASTEiJ_G0027180.1 mouse_genomes_project 4 517185 519862 + MGP_CASTEiJ_P0064541 Chchd7 protein_coding protein_coding MGP_CASTEiJ_T0064542.1 MGP_CASTEiJ_G0027180.1 mouse_genomes_project 4 519750 526520 + Chchd7 protein_coding processed_transcript MGP_CASTEiJ_T0064543.1 MGP_CASTEiJ_G0027180.1 mouse_genomes_project 4 523136 526181 + Chchd7 protein_coding retained_intron MGP_CASTEiJ_T0017321.1 MGP_CASTEiJ_G0014874.1 mouse_genomes_project 4 92630927 92654398 - Gm12703 processed_transcript processed_transcript MGP_CASTEiJ_T0065532.1 MGP_CASTEiJ_G0027387.1 mouse_genomes_project 4 43701815 43744057 + MGP_CASTEiJ_P0065532 Stra6l protein_coding protein_coding MGP_CASTEiJ_T0065533.1 MGP_CASTEiJ_G0027387.1 mouse_genomes_project 4 43702960 43744057 + MGP_CASTEiJ_P0065533 Stra6l protein_coding protein_coding MGP_CASTEiJ_T0065534.1 MGP_CASTEiJ_G0027387.1 mouse_genomes_project 4 43703091 43744057 + MGP_CASTEiJ_P0065534 Stra6l protein_coding protein_coding MGP_CASTEiJ_T0065535.1 MGP_CASTEiJ_G0027387.1 mouse_genomes_project 4 43703141 43715468 + Stra6l protein_coding processed_transcript MGP_CASTEiJ_T0065536.1 MGP_CASTEiJ_G0027387.1 mouse_genomes_project 4 43729305 43743667 + Stra6l protein_coding retained_intron MGP_CASTEiJ_T0014045.1 MGP_CASTEiJ_G0012208.1 mouse_genomes_project 4 37354101 37354896 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000307.1 MGP_CASTEiJ_G0000256.1 mouse_genomes_project 4 77314944 77315007 + mt-Tt Mt_tRNA Mt_tRNA MGP_CASTEiJ_T0001357.1 MGP_CASTEiJ_G0001287.1 mouse_genomes_project 4 39378067 39378536 - TEC TEC MGP_CASTEiJ_T0066424.1 MGP_CASTEiJ_G0027606.1 mouse_genomes_project 4 96025943 96035806 + Inadl protein_coding processed_transcript MGP_CASTEiJ_T0066425.1 MGP_CASTEiJ_G0027606.1 mouse_genomes_project 4 96025949 96353305 + MGP_CASTEiJ_P0066425 Inadl protein_coding protein_coding MGP_CASTEiJ_T0066426.1 MGP_CASTEiJ_G0027606.1 mouse_genomes_project 4 96026013 96179901 + MGP_CASTEiJ_P0066426 Inadl protein_coding protein_coding MGP_CASTEiJ_T0066427.1 MGP_CASTEiJ_G0027606.1 mouse_genomes_project 4 96026013 96299990 + MGP_CASTEiJ_P0066427 Inadl protein_coding protein_coding MGP_CASTEiJ_T0066428.1 MGP_CASTEiJ_G0027606.1 mouse_genomes_project 4 96026050 96084574 + MGP_CASTEiJ_P0066428 Inadl protein_coding protein_coding MGP_CASTEiJ_T0066429.1 MGP_CASTEiJ_G0027606.1 mouse_genomes_project 4 96046085 96062173 + Inadl protein_coding processed_transcript MGP_CASTEiJ_T0066430.1 MGP_CASTEiJ_G0027606.1 mouse_genomes_project 4 96067256 96071424 + Inadl protein_coding processed_transcript MGP_CASTEiJ_T0066431.1 MGP_CASTEiJ_G0027606.1 mouse_genomes_project 4 96071362 96127195 + MGP_CASTEiJ_P0066431 Inadl protein_coding protein_coding MGP_CASTEiJ_T0066432.1 MGP_CASTEiJ_G0027606.1 mouse_genomes_project 4 96080785 96352059 + MGP_CASTEiJ_P0066432 Inadl protein_coding protein_coding MGP_CASTEiJ_T0066433.1 MGP_CASTEiJ_G0027606.1 mouse_genomes_project 4 96124618 96137791 + Inadl protein_coding processed_transcript MGP_CASTEiJ_T0066434.1 MGP_CASTEiJ_G0027606.1 mouse_genomes_project 4 96148602 96164361 + MGP_CASTEiJ_P0066434 Inadl protein_coding protein_coding MGP_CASTEiJ_T0066435.1 MGP_CASTEiJ_G0027606.1 mouse_genomes_project 4 96171950 96353305 + MGP_CASTEiJ_P0066435 Inadl protein_coding protein_coding MGP_CASTEiJ_T0066436.1 MGP_CASTEiJ_G0027606.1 mouse_genomes_project 4 96172192 96315814 + MGP_CASTEiJ_P0066436 Inadl protein_coding protein_coding MGP_CASTEiJ_T0102315.1 MGP_CASTEiJ_G0039040.1 mouse_genomes_project 4 93852374 93868739 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0004374.1 MGP_CASTEiJ_G0003810.1 mouse_genomes_project 4 106978998 107004495 - 8030443G20Rik antisense antisense MGP_CASTEiJ_T0101054.1 MGP_CASTEiJ_G0037967.1 mouse_genomes_project 4 70239150 70240703 + Gm25769 snoRNA snoRNA MGP_CASTEiJ_T0014052.1 MGP_CASTEiJ_G0012215.1 mouse_genomes_project 4 38296412 38296810 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067443.1 MGP_CASTEiJ_G0027801.1 mouse_genomes_project 4 116295516 116298369 + MGP_CASTEiJ_P0067443 2610528J11Rik protein_coding protein_coding MGP_CASTEiJ_T0067444.1 MGP_CASTEiJ_G0027801.1 mouse_genomes_project 4 116295684 116303597 + MGP_CASTEiJ_P0067444 2610528J11Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0067445.1 MGP_CASTEiJ_G0027801.1 mouse_genomes_project 4 116295760 116298742 + MGP_CASTEiJ_P0067445 2610528J11Rik protein_coding protein_coding MGP_CASTEiJ_T0065689.1 MGP_CASTEiJ_G0027427.1 mouse_genomes_project 4 47730582 47733865 - MGP_CASTEiJ_P0065689 Ppp3r2 protein_coding protein_coding MGP_CASTEiJ_T0014177.1 MGP_CASTEiJ_G0012340.1 mouse_genomes_project 4 89953454 89953752 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069617.1 MGP_CASTEiJ_G0028282.1 mouse_genomes_project 4 151527421 151536148 + MGP_CASTEiJ_P0069617 Klhl21 protein_coding protein_coding MGP_CASTEiJ_T0069618.1 MGP_CASTEiJ_G0028282.1 mouse_genomes_project 4 151527530 151536158 + MGP_CASTEiJ_P0069618 Klhl21 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064940.1 MGP_CASTEiJ_G0027270.1 mouse_genomes_project 4 30265934 30287924 + MGP_CASTEiJ_P0064940 Ube2j1 protein_coding protein_coding MGP_CASTEiJ_T0064941.1 MGP_CASTEiJ_G0027270.1 mouse_genomes_project 4 30266034 30280657 + MGP_CASTEiJ_P0064941 Ube2j1 protein_coding protein_coding MGP_CASTEiJ_T0069198.1 MGP_CASTEiJ_G0028187.1 mouse_genomes_project 4 141194745 141225066 - MGP_CASTEiJ_P0069198 Dnajc16 protein_coding protein_coding MGP_CASTEiJ_T0069199.1 MGP_CASTEiJ_G0028187.1 mouse_genomes_project 4 141204442 141208790 - Dnajc16 protein_coding processed_transcript MGP_CASTEiJ_T0069200.1 MGP_CASTEiJ_G0028187.1 mouse_genomes_project 4 141217265 141225106 - MGP_CASTEiJ_P0069200 Dnajc16 protein_coding protein_coding MGP_CASTEiJ_T0068374.1 MGP_CASTEiJ_G0028005.1 mouse_genomes_project 4 131180834 131235634 + MGP_CASTEiJ_P0068374 Eya3 protein_coding protein_coding MGP_CASTEiJ_T0068375.1 MGP_CASTEiJ_G0028005.1 mouse_genomes_project 4 131180893 131262113 + MGP_CASTEiJ_P0068375 Eya3 protein_coding protein_coding MGP_CASTEiJ_T0068376.1 MGP_CASTEiJ_G0028005.1 mouse_genomes_project 4 131180893 131262110 + MGP_CASTEiJ_P0068376 Eya3 protein_coding protein_coding MGP_CASTEiJ_T0068377.1 MGP_CASTEiJ_G0028005.1 mouse_genomes_project 4 131180893 131262110 + MGP_CASTEiJ_P0068377 Eya3 protein_coding protein_coding MGP_CASTEiJ_T0068378.1 MGP_CASTEiJ_G0028005.1 mouse_genomes_project 4 131180903 131262110 + MGP_CASTEiJ_P0068378 Eya3 protein_coding protein_coding MGP_CASTEiJ_T0068379.1 MGP_CASTEiJ_G0028005.1 mouse_genomes_project 4 131180905 131239969 + Eya3 protein_coding processed_transcript MGP_CASTEiJ_T0068380.1 MGP_CASTEiJ_G0028005.1 mouse_genomes_project 4 131180911 131233843 + Eya3 protein_coding processed_transcript MGP_CASTEiJ_T0068381.1 MGP_CASTEiJ_G0028005.1 mouse_genomes_project 4 131180926 131259450 + Eya3 protein_coding processed_transcript MGP_CASTEiJ_T0068382.1 MGP_CASTEiJ_G0028005.1 mouse_genomes_project 4 131180932 131260783 + Eya3 protein_coding processed_transcript MGP_CASTEiJ_T0068383.1 MGP_CASTEiJ_G0028005.1 mouse_genomes_project 4 131180964 131235819 + Eya3 protein_coding processed_transcript MGP_CASTEiJ_T0068384.1 MGP_CASTEiJ_G0028005.1 mouse_genomes_project 4 131199692 131260749 + Eya3 protein_coding processed_transcript MGP_CASTEiJ_T0068385.1 MGP_CASTEiJ_G0028005.1 mouse_genomes_project 4 131241934 131251141 + Eya3 protein_coding processed_transcript MGP_CASTEiJ_T0068386.1 MGP_CASTEiJ_G0028005.1 mouse_genomes_project 4 131245238 131258961 + Eya3 protein_coding processed_transcript MGP_CASTEiJ_T0068781.1 MGP_CASTEiJ_G0028090.1 mouse_genomes_project 4 135061531 135086720 + MGP_CASTEiJ_P0068781 E2f2 protein_coding protein_coding MGP_CASTEiJ_T0068782.1 MGP_CASTEiJ_G0028090.1 mouse_genomes_project 4 135069913 135077354 + E2f2 protein_coding processed_transcript MGP_CASTEiJ_T0007764.1 MGP_CASTEiJ_G0006359.1 mouse_genomes_project 4 126115331 126116855 - 1700112K13Rik lincRNA lincRNA MGP_CASTEiJ_T0067801.1 MGP_CASTEiJ_G0027896.1 mouse_genomes_project 4 124183950 124207781 + MGP_CASTEiJ_P0067801 Csf3r protein_coding protein_coding MGP_CASTEiJ_T0067802.1 MGP_CASTEiJ_G0027896.1 mouse_genomes_project 4 124184126 124191309 + Csf3r protein_coding processed_transcript MGP_CASTEiJ_T0067803.1 MGP_CASTEiJ_G0027896.1 mouse_genomes_project 4 124186694 124207780 + MGP_CASTEiJ_P0067803 Csf3r protein_coding protein_coding MGP_CASTEiJ_T0067804.1 MGP_CASTEiJ_G0027896.1 mouse_genomes_project 4 124198228 124207209 + Csf3r protein_coding processed_transcript MGP_CASTEiJ_T0068947.1 MGP_CASTEiJ_G0028125.1 mouse_genomes_project 4 137474693 137477129 - MGP_CASTEiJ_P0068947 Fam43b protein_coding protein_coding MGP_CASTEiJ_T0017296.1 MGP_CASTEiJ_G0014857.1 mouse_genomes_project 4 32601923 32612263 + Gm12367 processed_transcript processed_transcript MGP_CASTEiJ_T0017297.1 MGP_CASTEiJ_G0014857.1 mouse_genomes_project 4 32601941 32612361 + Gm12367 processed_transcript processed_transcript MGP_CASTEiJ_T0017298.1 MGP_CASTEiJ_G0014857.1 mouse_genomes_project 4 32601958 32641249 + Gm12367 processed_transcript processed_transcript MGP_CASTEiJ_T0014097.1 MGP_CASTEiJ_G0012260.1 mouse_genomes_project 4 54469357 54469673 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066680.1 MGP_CASTEiJ_G0027659.1 mouse_genomes_project 4 104624463 104687644 - MGP_CASTEiJ_P0066680 Acot11 protein_coding protein_coding MGP_CASTEiJ_T0066681.1 MGP_CASTEiJ_G0027659.1 mouse_genomes_project 4 104627031 104692854 - MGP_CASTEiJ_P0066681 Acot11 protein_coding protein_coding MGP_CASTEiJ_T0066682.1 MGP_CASTEiJ_G0027659.1 mouse_genomes_project 4 104627187 104655185 - MGP_CASTEiJ_P0066682 Acot11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066683.1 MGP_CASTEiJ_G0027659.1 mouse_genomes_project 4 104635720 104637967 - Acot11 protein_coding processed_transcript MGP_CASTEiJ_T0066684.1 MGP_CASTEiJ_G0027659.1 mouse_genomes_project 4 104643777 104687641 - MGP_CASTEiJ_P0066684 Acot11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066685.1 MGP_CASTEiJ_G0027659.1 mouse_genomes_project 4 104645184 104687588 - MGP_CASTEiJ_P0066685 Acot11 protein_coding protein_coding MGP_CASTEiJ_T0066686.1 MGP_CASTEiJ_G0027659.1 mouse_genomes_project 4 104645227 104688047 - MGP_CASTEiJ_P0066686 Acot11 protein_coding protein_coding MGP_CASTEiJ_T0067273.1 MGP_CASTEiJ_G0027771.1 mouse_genomes_project 4 114684814 114748163 + MGP_CASTEiJ_P0067273 Eif2b3 protein_coding protein_coding MGP_CASTEiJ_T0067274.1 MGP_CASTEiJ_G0027771.1 mouse_genomes_project 4 114684820 114740049 + MGP_CASTEiJ_P0067274 Eif2b3 protein_coding protein_coding MGP_CASTEiJ_T0067275.1 MGP_CASTEiJ_G0027771.1 mouse_genomes_project 4 114687562 114737585 + MGP_CASTEiJ_P0067275 Eif2b3 protein_coding protein_coding MGP_CASTEiJ_T0067276.1 MGP_CASTEiJ_G0027771.1 mouse_genomes_project 4 114709528 114726084 + Eif2b3 protein_coding processed_transcript MGP_CASTEiJ_T0067277.1 MGP_CASTEiJ_G0027771.1 mouse_genomes_project 4 114733182 114741093 + Eif2b3 protein_coding processed_transcript MGP_CASTEiJ_T0065300.1 MGP_CASTEiJ_G0027344.1 mouse_genomes_project 4 41126181 41134436 - MGP_CASTEiJ_P0065300 Cd72 protein_coding protein_coding MGP_CASTEiJ_T0065301.1 MGP_CASTEiJ_G0027344.1 mouse_genomes_project 4 41127443 41134393 - MGP_CASTEiJ_P0065301 Cd72 protein_coding protein_coding MGP_CASTEiJ_T0065302.1 MGP_CASTEiJ_G0027344.1 mouse_genomes_project 4 41127443 41134372 - MGP_CASTEiJ_P0065302 Cd72 protein_coding protein_coding MGP_CASTEiJ_T0065303.1 MGP_CASTEiJ_G0027344.1 mouse_genomes_project 4 41127443 41134437 - MGP_CASTEiJ_P0065303 Cd72 protein_coding protein_coding MGP_CASTEiJ_T0065304.1 MGP_CASTEiJ_G0027344.1 mouse_genomes_project 4 41127454 41134435 - MGP_CASTEiJ_P0065304 Cd72 protein_coding protein_coding MGP_CASTEiJ_T0065305.1 MGP_CASTEiJ_G0027344.1 mouse_genomes_project 4 41127748 41129606 - Cd72 protein_coding retained_intron MGP_CASTEiJ_T0065306.1 MGP_CASTEiJ_G0027344.1 mouse_genomes_project 4 41129508 41132183 - Cd72 protein_coding retained_intron MGP_CASTEiJ_T0065307.1 MGP_CASTEiJ_G0027344.1 mouse_genomes_project 4 41132120 41134421 - Cd72 protein_coding retained_intron MGP_CASTEiJ_T0065308.1 MGP_CASTEiJ_G0027344.1 mouse_genomes_project 4 41132131 41134132 - Cd72 protein_coding processed_transcript MGP_CASTEiJ_T0065309.1 MGP_CASTEiJ_G0027344.1 mouse_genomes_project 4 41132411 41134435 - Cd72 protein_coding processed_transcript MGP_CASTEiJ_T0067770.1 MGP_CASTEiJ_G0027889.1 mouse_genomes_project 4 123071350 123093996 + MGP_CASTEiJ_P0067770 Rspo1 protein_coding protein_coding MGP_CASTEiJ_T0067771.1 MGP_CASTEiJ_G0027889.1 mouse_genomes_project 4 123071549 123093492 + MGP_CASTEiJ_P0067771 Rspo1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067772.1 MGP_CASTEiJ_G0027889.1 mouse_genomes_project 4 123092370 123093416 + Rspo1 protein_coding processed_transcript MGP_CASTEiJ_T0101066.1 MGP_CASTEiJ_G0037979.1 mouse_genomes_project 4 92104043 92104144 + Gm22804 snoRNA snoRNA MGP_CASTEiJ_T0069105.1 MGP_CASTEiJ_G0028166.1 mouse_genomes_project 4 140435949 140447897 - Necap2 protein_coding processed_transcript MGP_CASTEiJ_T0069106.1 MGP_CASTEiJ_G0028166.1 mouse_genomes_project 4 140435949 140447912 - MGP_CASTEiJ_P0069106 Necap2 protein_coding protein_coding MGP_CASTEiJ_T0069107.1 MGP_CASTEiJ_G0028166.1 mouse_genomes_project 4 140436785 140444599 - Necap2 protein_coding retained_intron MGP_CASTEiJ_T0069108.1 MGP_CASTEiJ_G0028166.1 mouse_genomes_project 4 140436833 140438279 - Necap2 protein_coding retained_intron MGP_CASTEiJ_T0069109.1 MGP_CASTEiJ_G0028166.1 mouse_genomes_project 4 140436954 140441274 - Necap2 protein_coding retained_intron MGP_CASTEiJ_T0069110.1 MGP_CASTEiJ_G0028166.1 mouse_genomes_project 4 140437001 140443140 - MGP_CASTEiJ_P0069110 Necap2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069111.1 MGP_CASTEiJ_G0028166.1 mouse_genomes_project 4 140437647 140447912 - Necap2 protein_coding processed_transcript MGP_CASTEiJ_T0069112.1 MGP_CASTEiJ_G0028166.1 mouse_genomes_project 4 140439522 140447912 - Necap2 protein_coding processed_transcript MGP_CASTEiJ_T0069113.1 MGP_CASTEiJ_G0028166.1 mouse_genomes_project 4 140439592 140441208 - Necap2 protein_coding retained_intron MGP_CASTEiJ_T0069114.1 MGP_CASTEiJ_G0028166.1 mouse_genomes_project 4 140439620 140447849 - Necap2 protein_coding retained_intron MGP_CASTEiJ_T0069115.1 MGP_CASTEiJ_G0028166.1 mouse_genomes_project 4 140441763 140447912 - Necap2 protein_coding retained_intron MGP_CASTEiJ_T0101058.1 MGP_CASTEiJ_G0037971.1 mouse_genomes_project 4 72353272 72353394 - Gm22864 snoRNA snoRNA MGP_CASTEiJ_T0068224.1 MGP_CASTEiJ_G0027975.1 mouse_genomes_project 4 128771140 128794806 - MGP_CASTEiJ_P0068224 Serinc2 protein_coding protein_coding MGP_CASTEiJ_T0068225.1 MGP_CASTEiJ_G0027975.1 mouse_genomes_project 4 128771140 128794438 - MGP_CASTEiJ_P0068225 Serinc2 protein_coding protein_coding MGP_CASTEiJ_T0068226.1 MGP_CASTEiJ_G0027975.1 mouse_genomes_project 4 128771540 128798423 - MGP_CASTEiJ_P0068226 Serinc2 protein_coding protein_coding MGP_CASTEiJ_T0068227.1 MGP_CASTEiJ_G0027975.1 mouse_genomes_project 4 128780645 128794752 - MGP_CASTEiJ_P0068227 Serinc2 protein_coding protein_coding MGP_CASTEiJ_T0068228.1 MGP_CASTEiJ_G0027975.1 mouse_genomes_project 4 128782922 128794765 - MGP_CASTEiJ_P0068228 Serinc2 protein_coding protein_coding MGP_CASTEiJ_T0068327.1 MGP_CASTEiJ_G0027996.1 mouse_genomes_project 4 130808090 130809288 - MGP_CASTEiJ_P0068327 Rab42 protein_coding protein_coding MGP_CASTEiJ_T0064589.1 MGP_CASTEiJ_G0027193.1 mouse_genomes_project 4 5052720 5131038 + MGP_CASTEiJ_P0064589 Rab2a protein_coding protein_coding MGP_CASTEiJ_T0066272.1 MGP_CASTEiJ_G0027557.1 mouse_genomes_project 4 85856879 85902090 - MGP_CASTEiJ_P0066272 Hacd4 protein_coding protein_coding MGP_CASTEiJ_T0066275.1 MGP_CASTEiJ_G0027557.1 mouse_genomes_project 4 85874500 85902103 - MGP_CASTEiJ_P0066275 Hacd4 protein_coding protein_coding MGP_CASTEiJ_T0066276.1 MGP_CASTEiJ_G0027557.1 mouse_genomes_project 4 85876765 85902102 - MGP_CASTEiJ_P0066276 Hacd4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099840.1 MGP_CASTEiJ_G0036753.1 mouse_genomes_project 4 134410054 134410155 + Gm23106 snRNA snRNA MGP_CASTEiJ_T0004481.1 MGP_CASTEiJ_G0003894.1 mouse_genomes_project 4 154356797 154364004 + Gm13111 antisense antisense MGP_CASTEiJ_T0065446.1 MGP_CASTEiJ_G0027372.1 mouse_genomes_project 4 42052780 42115438 + MGP_CASTEiJ_P0065446 Melk protein_coding protein_coding MGP_CASTEiJ_T0065447.1 MGP_CASTEiJ_G0027372.1 mouse_genomes_project 4 42054600 42080737 + MGP_CASTEiJ_P0065447 Melk protein_coding protein_coding MGP_CASTEiJ_T0065448.1 MGP_CASTEiJ_G0027372.1 mouse_genomes_project 4 42055528 42079268 + Melk protein_coding processed_transcript MGP_CASTEiJ_T0065449.1 MGP_CASTEiJ_G0027372.1 mouse_genomes_project 4 42055528 42071599 + MGP_CASTEiJ_P0065449 Melk protein_coding protein_coding MGP_CASTEiJ_T0067657.1 MGP_CASTEiJ_G0027858.1 mouse_genomes_project 4 120827549 120843536 - Mfsd2a protein_coding processed_transcript MGP_CASTEiJ_T0067658.1 MGP_CASTEiJ_G0027858.1 mouse_genomes_project 4 120827549 120843572 - MGP_CASTEiJ_P0067658 Mfsd2a protein_coding protein_coding MGP_CASTEiJ_T0067659.1 MGP_CASTEiJ_G0027858.1 mouse_genomes_project 4 120839091 120842370 - Mfsd2a protein_coding processed_transcript MGP_CASTEiJ_T0067660.1 MGP_CASTEiJ_G0027858.1 mouse_genomes_project 4 120839118 120843572 - MGP_CASTEiJ_P0067660 Mfsd2a protein_coding protein_coding MGP_CASTEiJ_T0068155.1 MGP_CASTEiJ_G0027964.1 mouse_genomes_project 4 128086805 128118980 - MGP_CASTEiJ_P0068155 Kpna6 protein_coding protein_coding MGP_CASTEiJ_T0068156.1 MGP_CASTEiJ_G0027964.1 mouse_genomes_project 4 128096492 128097767 - Kpna6 protein_coding retained_intron MGP_CASTEiJ_T0068157.1 MGP_CASTEiJ_G0027964.1 mouse_genomes_project 4 128097140 128099552 - Kpna6 protein_coding retained_intron MGP_CASTEiJ_T0068158.1 MGP_CASTEiJ_G0027964.1 mouse_genomes_project 4 128100270 128118828 - MGP_CASTEiJ_P0068158 Kpna6 protein_coding protein_coding MGP_CASTEiJ_T0068159.1 MGP_CASTEiJ_G0027964.1 mouse_genomes_project 4 128103817 128119067 - Kpna6 protein_coding retained_intron MGP_CASTEiJ_T0066146.1 MGP_CASTEiJ_G0027539.1 mouse_genomes_project 4 80502227 80612371 - MGP_CASTEiJ_P0066146 Ttc39b protein_coding protein_coding MGP_CASTEiJ_T0066147.1 MGP_CASTEiJ_G0027539.1 mouse_genomes_project 4 80508382 80515133 - Ttc39b protein_coding retained_intron MGP_CASTEiJ_T0066148.1 MGP_CASTEiJ_G0027539.1 mouse_genomes_project 4 80523015 80612355 - MGP_CASTEiJ_P0066148 Ttc39b protein_coding protein_coding MGP_CASTEiJ_T0066149.1 MGP_CASTEiJ_G0027539.1 mouse_genomes_project 4 80530757 80549859 - Ttc39b protein_coding processed_transcript MGP_CASTEiJ_T0066150.1 MGP_CASTEiJ_G0027539.1 mouse_genomes_project 4 80536205 80570215 - MGP_CASTEiJ_P0066150 Ttc39b protein_coding protein_coding MGP_CASTEiJ_T0066151.1 MGP_CASTEiJ_G0027539.1 mouse_genomes_project 4 80543131 80612305 - MGP_CASTEiJ_P0066151 Ttc39b protein_coding protein_coding MGP_CASTEiJ_T0066152.1 MGP_CASTEiJ_G0027539.1 mouse_genomes_project 4 80543262 80564480 - MGP_CASTEiJ_P0066152 Ttc39b protein_coding protein_coding MGP_CASTEiJ_T0014041.1 MGP_CASTEiJ_G0012204.1 mouse_genomes_project 4 35372304 35382132 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065095.1 MGP_CASTEiJ_G0027310.1 mouse_genomes_project 4 38757867 38827532 + MGP_CASTEiJ_P0065095 Ube2r2 protein_coding protein_coding MGP_CASTEiJ_T0065096.1 MGP_CASTEiJ_G0027310.1 mouse_genomes_project 4 38816180 38824778 + Ube2r2 protein_coding retained_intron MGP_CASTEiJ_T0065097.1 MGP_CASTEiJ_G0027310.1 mouse_genomes_project 4 38822136 38824991 + Ube2r2 protein_coding retained_intron MGP_CASTEiJ_T0065661.1 MGP_CASTEiJ_G0027418.1 mouse_genomes_project 4 47493377 47497142 - MGP_CASTEiJ_P0065661 Acnat1 protein_coding protein_coding MGP_CASTEiJ_T0014299.1 MGP_CASTEiJ_G0012462.1 mouse_genomes_project 4 131893980 131894436 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007675.1 MGP_CASTEiJ_G0006290.1 mouse_genomes_project 4 60528644 60537769 - lincRNA lincRNA MGP_CASTEiJ_T0007831.1 MGP_CASTEiJ_G0006410.1 mouse_genomes_project 4 150236656 150251865 + Gm13049 lincRNA lincRNA MGP_CASTEiJ_T0064507.1 MGP_CASTEiJ_G0027174.1 mouse_genomes_project 4 19777 48184 - MGP_CASTEiJ_P0064507 Tmem68 protein_coding protein_coding MGP_CASTEiJ_T0064508.1 MGP_CASTEiJ_G0027174.1 mouse_genomes_project 4 19777 48140 - MGP_CASTEiJ_P0064508 Tmem68 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064509.1 MGP_CASTEiJ_G0027174.1 mouse_genomes_project 4 21064 22981 - Tmem68 protein_coding retained_intron MGP_CASTEiJ_T0064510.1 MGP_CASTEiJ_G0027174.1 mouse_genomes_project 4 41894 48135 - Tmem68 protein_coding retained_intron MGP_CASTEiJ_T0064511.1 MGP_CASTEiJ_G0027174.1 mouse_genomes_project 4 41913 48135 - Tmem68 protein_coding processed_transcript MGP_CASTEiJ_T0064512.1 MGP_CASTEiJ_G0027174.1 mouse_genomes_project 4 42088 47066 - MGP_CASTEiJ_P0064512 Tmem68 protein_coding protein_coding MGP_CASTEiJ_T0014034.1 MGP_CASTEiJ_G0012197.1 mouse_genomes_project 4 32288751 32294633 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013965.1 MGP_CASTEiJ_G0012128.1 mouse_genomes_project 4 12364024 12364348 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004332.1 MGP_CASTEiJ_G0003781.1 mouse_genomes_project 4 55528446 55532947 + Gm12530 antisense antisense MGP_CASTEiJ_T0069242.1 MGP_CASTEiJ_G0028199.1 mouse_genomes_project 4 142975840 142984462 + MGP_CASTEiJ_P0069242 Pramef8 protein_coding protein_coding MGP_CASTEiJ_T0069243.1 MGP_CASTEiJ_G0028199.1 mouse_genomes_project 4 142976381 142980229 + MGP_CASTEiJ_P0069243 Pramef8 protein_coding protein_coding MGP_CASTEiJ_T0069244.1 MGP_CASTEiJ_G0028199.1 mouse_genomes_project 4 142976396 142984462 + MGP_CASTEiJ_P0069244 Pramef8 protein_coding protein_coding MGP_CASTEiJ_T0069245.1 MGP_CASTEiJ_G0028199.1 mouse_genomes_project 4 142976418 142981055 + MGP_CASTEiJ_P0069245 Pramef8 protein_coding protein_coding MGP_CASTEiJ_T0069246.1 MGP_CASTEiJ_G0028199.1 mouse_genomes_project 4 142976419 142977762 + Pramef8 protein_coding processed_transcript MGP_CASTEiJ_T0014166.1 MGP_CASTEiJ_G0012329.1 mouse_genomes_project 4 85515883 85516121 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017363.1 MGP_CASTEiJ_G0014897.1 mouse_genomes_project 4 140159748 140166326 + Gm13032 processed_transcript processed_transcript MGP_CASTEiJ_T0069352.1 MGP_CASTEiJ_G0028237.1 mouse_genomes_project 4 147391549 147444628 - MGP_CASTEiJ_P0069352 Ptchd2 protein_coding protein_coding MGP_CASTEiJ_T0069353.1 MGP_CASTEiJ_G0028237.1 mouse_genomes_project 4 147412188 147414785 - Ptchd2 protein_coding retained_intron MGP_CASTEiJ_T0069354.1 MGP_CASTEiJ_G0028237.1 mouse_genomes_project 4 147413850 147415265 - Ptchd2 protein_coding processed_transcript MGP_CASTEiJ_T0066047.1 MGP_CASTEiJ_G0027520.1 mouse_genomes_project 4 67473295 67581550 - MGP_CASTEiJ_P0066047 Megf9 protein_coding protein_coding MGP_CASTEiJ_T0066048.1 MGP_CASTEiJ_G0027520.1 mouse_genomes_project 4 67510035 67581617 - MGP_CASTEiJ_P0066048 Megf9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0007816.1 MGP_CASTEiJ_G0006395.1 mouse_genomes_project 4 139690633 139695998 + Gm13017 lincRNA lincRNA MGP_CASTEiJ_T0014141.1 MGP_CASTEiJ_G0012304.1 mouse_genomes_project 4 73850446 73852899 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014283.1 MGP_CASTEiJ_G0012446.1 mouse_genomes_project 4 124729217 124729861 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065237.1 MGP_CASTEiJ_G0027338.1 mouse_genomes_project 4 40675031 40689481 - MGP_CASTEiJ_P0065237 Fam214b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065238.1 MGP_CASTEiJ_G0027338.1 mouse_genomes_project 4 40675031 40689086 - MGP_CASTEiJ_P0065238 Fam214b protein_coding protein_coding MGP_CASTEiJ_T0065239.1 MGP_CASTEiJ_G0027338.1 mouse_genomes_project 4 40675031 40689058 - MGP_CASTEiJ_P0065239 Fam214b protein_coding protein_coding MGP_CASTEiJ_T0065240.1 MGP_CASTEiJ_G0027338.1 mouse_genomes_project 4 40675031 40689481 - MGP_CASTEiJ_P0065240 Fam214b protein_coding protein_coding MGP_CASTEiJ_T0065241.1 MGP_CASTEiJ_G0027338.1 mouse_genomes_project 4 40675031 40683564 - MGP_CASTEiJ_P0065241 Fam214b protein_coding protein_coding MGP_CASTEiJ_T0065242.1 MGP_CASTEiJ_G0027338.1 mouse_genomes_project 4 40675031 40683567 - MGP_CASTEiJ_P0065242 Fam214b protein_coding protein_coding MGP_CASTEiJ_T0065243.1 MGP_CASTEiJ_G0027338.1 mouse_genomes_project 4 40676031 40683306 - MGP_CASTEiJ_P0065243 Fam214b protein_coding unknown_likely_coding MGP_CASTEiJ_T0065244.1 MGP_CASTEiJ_G0027338.1 mouse_genomes_project 4 40676031 40683306 - MGP_CASTEiJ_P0065244 Fam214b protein_coding unknown_likely_coding MGP_CASTEiJ_T0065245.1 MGP_CASTEiJ_G0027338.1 mouse_genomes_project 4 40678931 40683571 - MGP_CASTEiJ_P0065245 Fam214b protein_coding protein_coding MGP_CASTEiJ_T0065246.1 MGP_CASTEiJ_G0027338.1 mouse_genomes_project 4 40679212 40679914 - MGP_CASTEiJ_P0065246 Fam214b protein_coding protein_coding MGP_CASTEiJ_T0065247.1 MGP_CASTEiJ_G0027338.1 mouse_genomes_project 4 40679315 40682607 - MGP_CASTEiJ_P0065247 Fam214b protein_coding protein_coding MGP_CASTEiJ_T0065248.1 MGP_CASTEiJ_G0027338.1 mouse_genomes_project 4 40679589 40689020 - Fam214b protein_coding processed_transcript MGP_CASTEiJ_T0068612.1 MGP_CASTEiJ_G0028055.1 mouse_genomes_project 4 133114541 133138545 + Pafah2 protein_coding processed_transcript MGP_CASTEiJ_T0068613.1 MGP_CASTEiJ_G0028055.1 mouse_genomes_project 4 133114578 133132324 + Pafah2 protein_coding processed_transcript MGP_CASTEiJ_T0068614.1 MGP_CASTEiJ_G0028055.1 mouse_genomes_project 4 133115348 133130072 + Pafah2 protein_coding processed_transcript MGP_CASTEiJ_T0068615.1 MGP_CASTEiJ_G0028055.1 mouse_genomes_project 4 133115474 133147877 + MGP_CASTEiJ_P0068615 Pafah2 protein_coding protein_coding MGP_CASTEiJ_T0068616.1 MGP_CASTEiJ_G0028055.1 mouse_genomes_project 4 133122040 133124204 + MGP_CASTEiJ_P0068616 Pafah2 protein_coding protein_coding MGP_CASTEiJ_T0068617.1 MGP_CASTEiJ_G0028055.1 mouse_genomes_project 4 133122098 133143005 + Pafah2 protein_coding processed_transcript MGP_CASTEiJ_T0010340.1 MGP_CASTEiJ_G0008528.1 mouse_genomes_project 4 136143235 136143311 + Gm23263 miRNA miRNA MGP_CASTEiJ_T0014327.1 MGP_CASTEiJ_G0012490.1 mouse_genomes_project 4 145172941 145173079 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064546.1 MGP_CASTEiJ_G0027182.1 mouse_genomes_project 4 632178 654361 - MGP_CASTEiJ_P0064546 Sdr16c6 protein_coding protein_coding MGP_CASTEiJ_T0064547.1 MGP_CASTEiJ_G0027182.1 mouse_genomes_project 4 632180 654947 - MGP_CASTEiJ_P0064547 Sdr16c6 protein_coding protein_coding MGP_CASTEiJ_T0066616.1 MGP_CASTEiJ_G0027641.1 mouse_genomes_project 4 101387181 101962765 + Dab1 protein_coding processed_transcript MGP_CASTEiJ_T0066617.1 MGP_CASTEiJ_G0027641.1 mouse_genomes_project 4 101387487 102483788 + MGP_CASTEiJ_P0066617 Dab1 protein_coding protein_coding MGP_CASTEiJ_T0066618.1 MGP_CASTEiJ_G0027641.1 mouse_genomes_project 4 102151934 102482902 + MGP_CASTEiJ_P0066618 Dab1 protein_coding protein_coding MGP_CASTEiJ_T0066619.1 MGP_CASTEiJ_G0027641.1 mouse_genomes_project 4 102152411 102547607 + MGP_CASTEiJ_P0066619 Dab1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066620.1 MGP_CASTEiJ_G0027641.1 mouse_genomes_project 4 102152411 102550640 + MGP_CASTEiJ_P0066620 Dab1 protein_coding protein_coding MGP_CASTEiJ_T0066621.1 MGP_CASTEiJ_G0027641.1 mouse_genomes_project 4 102152494 102548677 + MGP_CASTEiJ_P0066621 Dab1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066622.1 MGP_CASTEiJ_G0027641.1 mouse_genomes_project 4 102306001 102483788 + MGP_CASTEiJ_P0066622 Dab1 protein_coding protein_coding MGP_CASTEiJ_T0066623.1 MGP_CASTEiJ_G0027641.1 mouse_genomes_project 4 102391275 102482198 + Dab1 protein_coding processed_transcript MGP_CASTEiJ_T0066624.1 MGP_CASTEiJ_G0027641.1 mouse_genomes_project 4 102405148 102519570 + MGP_CASTEiJ_P0066624 Dab1 protein_coding protein_coding MGP_CASTEiJ_T0011254.1 MGP_CASTEiJ_G0009442.1 mouse_genomes_project 4 132306350 132306621 + Gm22662 misc_RNA misc_RNA MGP_CASTEiJ_T0004359.1 MGP_CASTEiJ_G0003798.1 mouse_genomes_project 4 96792726 96794615 + Gm12705 antisense antisense MGP_CASTEiJ_T0014265.1 MGP_CASTEiJ_G0012428.1 mouse_genomes_project 4 119083822 119084029 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007766.1 MGP_CASTEiJ_G0006361.1 mouse_genomes_project 4 127208229 127238328 + Gm12968 lincRNA lincRNA MGP_CASTEiJ_T0007712.1 MGP_CASTEiJ_G0006324.1 mouse_genomes_project 4 98996308 99030794 - Gm12796 lincRNA lincRNA MGP_CASTEiJ_T0007799.1 MGP_CASTEiJ_G0006382.1 mouse_genomes_project 4 133899303 133901530 - Gm16225 lincRNA lincRNA MGP_CASTEiJ_T0017330.1 MGP_CASTEiJ_G0014882.1 mouse_genomes_project 4 107620388 107710110 + Gm12811 processed_transcript processed_transcript MGP_CASTEiJ_T0068000.1 MGP_CASTEiJ_G0027939.1 mouse_genomes_project 4 127364091 127374961 + Ak2 protein_coding processed_transcript MGP_CASTEiJ_T0068001.1 MGP_CASTEiJ_G0027939.1 mouse_genomes_project 4 127365340 127382488 + MGP_CASTEiJ_P0068001 Ak2 protein_coding protein_coding MGP_CASTEiJ_T0068002.1 MGP_CASTEiJ_G0027939.1 mouse_genomes_project 4 127365391 127385214 + MGP_CASTEiJ_P0068002 Ak2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068003.1 MGP_CASTEiJ_G0027939.1 mouse_genomes_project 4 127365469 127382316 + MGP_CASTEiJ_P0068003 Ak2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068067.1 MGP_CASTEiJ_G0027950.1 mouse_genomes_project 4 127766453 127792808 - MGP_CASTEiJ_P0068067 Zbtb8a protein_coding protein_coding MGP_CASTEiJ_T0065824.1 MGP_CASTEiJ_G0027463.1 mouse_genomes_project 4 56686079 56819591 + MGP_CASTEiJ_P0065824 Musk protein_coding unknown_likely_coding MGP_CASTEiJ_T0065825.1 MGP_CASTEiJ_G0027463.1 mouse_genomes_project 4 56710207 56808055 + MGP_CASTEiJ_P0065825 Musk protein_coding protein_coding MGP_CASTEiJ_T0065826.1 MGP_CASTEiJ_G0027463.1 mouse_genomes_project 4 56710209 56808055 + MGP_CASTEiJ_P0065826 Musk protein_coding protein_coding MGP_CASTEiJ_T0065827.1 MGP_CASTEiJ_G0027463.1 mouse_genomes_project 4 56710209 56808056 + MGP_CASTEiJ_P0065827 Musk protein_coding protein_coding MGP_CASTEiJ_T0065828.1 MGP_CASTEiJ_G0027463.1 mouse_genomes_project 4 56710209 56808055 + MGP_CASTEiJ_P0065828 Musk protein_coding protein_coding MGP_CASTEiJ_T0065829.1 MGP_CASTEiJ_G0027463.1 mouse_genomes_project 4 56710209 56808055 + MGP_CASTEiJ_P0065829 Musk protein_coding protein_coding MGP_CASTEiJ_T0065830.1 MGP_CASTEiJ_G0027463.1 mouse_genomes_project 4 56710209 56808056 + MGP_CASTEiJ_P0065830 Musk protein_coding protein_coding MGP_CASTEiJ_T0065831.1 MGP_CASTEiJ_G0027463.1 mouse_genomes_project 4 56710209 56808056 + MGP_CASTEiJ_P0065831 Musk protein_coding protein_coding MGP_CASTEiJ_T0065832.1 MGP_CASTEiJ_G0027463.1 mouse_genomes_project 4 56710412 56731963 + Musk protein_coding processed_transcript MGP_CASTEiJ_T0065833.1 MGP_CASTEiJ_G0027463.1 mouse_genomes_project 4 56797379 56819591 + MGP_CASTEiJ_P0065833 Musk protein_coding unknown_likely_coding MGP_CASTEiJ_T0014221.1 MGP_CASTEiJ_G0012384.1 mouse_genomes_project 4 105626200 105626720 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065870.1 MGP_CASTEiJ_G0027474.1 mouse_genomes_project 4 57792729 57794000 - Susd1 protein_coding retained_intron MGP_CASTEiJ_T0065871.1 MGP_CASTEiJ_G0027474.1 mouse_genomes_project 4 57792729 57920443 - MGP_CASTEiJ_P0065871 Susd1 protein_coding protein_coding MGP_CASTEiJ_T0065872.1 MGP_CASTEiJ_G0027474.1 mouse_genomes_project 4 57792800 57920443 - MGP_CASTEiJ_P0065872 Susd1 protein_coding protein_coding MGP_CASTEiJ_T0065873.1 MGP_CASTEiJ_G0027474.1 mouse_genomes_project 4 57808508 57812276 - Susd1 protein_coding retained_intron MGP_CASTEiJ_T0065874.1 MGP_CASTEiJ_G0027474.1 mouse_genomes_project 4 57811210 57839096 - Susd1 protein_coding retained_intron MGP_CASTEiJ_T0101013.1 MGP_CASTEiJ_G0037926.1 mouse_genomes_project 4 327592 327724 - Gm22781 snoRNA snoRNA MGP_CASTEiJ_T0007710.1 MGP_CASTEiJ_G0006322.1 mouse_genomes_project 4 97741385 97757178 + Gm12702 lincRNA lincRNA MGP_CASTEiJ_T0065608.1 MGP_CASTEiJ_G0027405.1 mouse_genomes_project 4 45152202 45256499 + MGP_CASTEiJ_P0065608 Col15a1 protein_coding protein_coding MGP_CASTEiJ_T0065609.1 MGP_CASTEiJ_G0027405.1 mouse_genomes_project 4 45152202 45256503 + MGP_CASTEiJ_P0065609 Col15a1 protein_coding protein_coding MGP_CASTEiJ_T0065610.1 MGP_CASTEiJ_G0027405.1 mouse_genomes_project 4 45177350 45189233 + Col15a1 protein_coding processed_transcript MGP_CASTEiJ_T0065611.1 MGP_CASTEiJ_G0027405.1 mouse_genomes_project 4 45202184 45205730 + Col15a1 protein_coding processed_transcript MGP_CASTEiJ_T0065612.1 MGP_CASTEiJ_G0027405.1 mouse_genomes_project 4 45202505 45205919 + Col15a1 protein_coding processed_transcript MGP_CASTEiJ_T0065613.1 MGP_CASTEiJ_G0027405.1 mouse_genomes_project 4 45231532 45236698 + MGP_CASTEiJ_P0065613 Col15a1 protein_coding protein_coding MGP_CASTEiJ_T0065614.1 MGP_CASTEiJ_G0027405.1 mouse_genomes_project 4 45231544 45256503 + MGP_CASTEiJ_P0065614 Col15a1 protein_coding protein_coding MGP_CASTEiJ_T0065615.1 MGP_CASTEiJ_G0027405.1 mouse_genomes_project 4 45231762 45242763 + MGP_CASTEiJ_P0065615 Col15a1 protein_coding protein_coding MGP_CASTEiJ_T0065616.1 MGP_CASTEiJ_G0027405.1 mouse_genomes_project 4 45247182 45256498 + MGP_CASTEiJ_P0065616 Col15a1 protein_coding protein_coding MGP_CASTEiJ_T0067258.1 MGP_CASTEiJ_G0027767.1 mouse_genomes_project 4 114478838 114480642 - MGP_CASTEiJ_P0067258 Hpdl protein_coding protein_coding MGP_CASTEiJ_T0067645.1 MGP_CASTEiJ_G0027855.1 mouse_genomes_project 4 120188205 120203072 - MGP_CASTEiJ_P0067645 9530002B09Rik protein_coding protein_coding MGP_CASTEiJ_T0065664.1 MGP_CASTEiJ_G0027420.1 mouse_genomes_project 4 47533761 47549884 - MGP_CASTEiJ_P0065664 Baat protein_coding protein_coding MGP_CASTEiJ_T0065665.1 MGP_CASTEiJ_G0027420.1 mouse_genomes_project 4 47534159 47546474 - MGP_CASTEiJ_P0065665 Baat protein_coding protein_coding MGP_CASTEiJ_T0014261.1 MGP_CASTEiJ_G0012424.1 mouse_genomes_project 4 117389998 117390372 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014315.1 MGP_CASTEiJ_G0012478.1 mouse_genomes_project 4 136181759 136182347 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068083.1 MGP_CASTEiJ_G0027954.1 mouse_genomes_project 4 127913984 127914751 + MGP_CASTEiJ_P0068083 Fam229a protein_coding protein_coding MGP_CASTEiJ_T0068084.1 MGP_CASTEiJ_G0027954.1 mouse_genomes_project 4 127914034 127914751 + Fam229a protein_coding retained_intron MGP_CASTEiJ_T0014253.1 MGP_CASTEiJ_G0012416.1 mouse_genomes_project 4 115549835 115550311 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099796.1 MGP_CASTEiJ_G0036709.1 mouse_genomes_project 4 66151041 66151148 + Gm24697 snRNA snRNA MGP_CASTEiJ_T0004304.1 MGP_CASTEiJ_G0003758.1 mouse_genomes_project 4 21625431 21636202 + Gm11899 antisense antisense MGP_CASTEiJ_T0014206.1 MGP_CASTEiJ_G0012369.1 mouse_genomes_project 4 99124963 99173003 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014329.1 MGP_CASTEiJ_G0012492.1 mouse_genomes_project 4 146999303 146999624 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014163.1 MGP_CASTEiJ_G0012326.1 mouse_genomes_project 4 83847976 83848305 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065898.1 MGP_CASTEiJ_G0027480.1 mouse_genomes_project 4 58431004 58440979 - MGP_CASTEiJ_P0065898 Slc46a2 protein_coding protein_coding MGP_CASTEiJ_T0069748.1 MGP_CASTEiJ_G0028301.1 mouse_genomes_project 4 153631263 153638494 - MGP_CASTEiJ_P0069748 Dffb protein_coding unknown_likely_coding MGP_CASTEiJ_T0069749.1 MGP_CASTEiJ_G0028301.1 mouse_genomes_project 4 153631271 153641581 - MGP_CASTEiJ_P0069749 Dffb protein_coding protein_coding MGP_CASTEiJ_T0069750.1 MGP_CASTEiJ_G0028301.1 mouse_genomes_project 4 153631960 153641600 - MGP_CASTEiJ_P0069750 Dffb protein_coding unknown_likely_coding MGP_CASTEiJ_T0069751.1 MGP_CASTEiJ_G0028301.1 mouse_genomes_project 4 153635665 153641506 - Dffb protein_coding processed_transcript MGP_CASTEiJ_T0069752.1 MGP_CASTEiJ_G0028301.1 mouse_genomes_project 4 153639042 153641512 - Dffb protein_coding retained_intron MGP_CASTEiJ_T0069753.1 MGP_CASTEiJ_G0028301.1 mouse_genomes_project 4 153639190 153641444 - MGP_CASTEiJ_P0069753 Dffb protein_coding unknown_likely_coding MGP_CASTEiJ_T0069754.1 MGP_CASTEiJ_G0028301.1 mouse_genomes_project 4 153640957 153641536 - Dffb protein_coding retained_intron MGP_CASTEiJ_T0065656.1 MGP_CASTEiJ_G0027416.1 mouse_genomes_project 4 46666058 46676033 + MGP_CASTEiJ_P0065656 Murc protein_coding protein_coding MGP_CASTEiJ_T0014237.1 MGP_CASTEiJ_G0012400.1 mouse_genomes_project 4 109871771 109872761 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068573.1 MGP_CASTEiJ_G0028044.1 mouse_genomes_project 4 132890438 132904770 - MGP_CASTEiJ_P0068573 Gm7534 protein_coding protein_coding MGP_CASTEiJ_T0064720.1 MGP_CASTEiJ_G0027218.1 mouse_genomes_project 4 9560919 9628706 + MGP_CASTEiJ_P0064720 Triqk protein_coding protein_coding MGP_CASTEiJ_T0064721.1 MGP_CASTEiJ_G0027218.1 mouse_genomes_project 4 9560938 9628441 + MGP_CASTEiJ_P0064721 Triqk protein_coding unknown_likely_coding MGP_CASTEiJ_T0064722.1 MGP_CASTEiJ_G0027218.1 mouse_genomes_project 4 9560938 9628441 + MGP_CASTEiJ_P0064722 Triqk protein_coding unknown_likely_coding MGP_CASTEiJ_T0064723.1 MGP_CASTEiJ_G0027218.1 mouse_genomes_project 4 9560939 9633414 + MGP_CASTEiJ_P0064723 Triqk protein_coding protein_coding MGP_CASTEiJ_T0064724.1 MGP_CASTEiJ_G0027218.1 mouse_genomes_project 4 9572290 9628903 + Triqk protein_coding processed_transcript MGP_CASTEiJ_T0067823.1 MGP_CASTEiJ_G0027901.1 mouse_genomes_project 4 124320493 124322625 + MGP_CASTEiJ_P0067823 Eva1b protein_coding protein_coding MGP_CASTEiJ_T0067824.1 MGP_CASTEiJ_G0027901.1 mouse_genomes_project 4 124320753 124322626 + MGP_CASTEiJ_P0067824 Eva1b protein_coding protein_coding MGP_CASTEiJ_T0067825.1 MGP_CASTEiJ_G0027901.1 mouse_genomes_project 4 124321282 124322616 + MGP_CASTEiJ_P0067825 Eva1b protein_coding protein_coding MGP_CASTEiJ_T0014010.1 MGP_CASTEiJ_G0012173.1 mouse_genomes_project 4 25562005 25562748 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069885.1 MGP_CASTEiJ_G0028324.1 mouse_genomes_project 4 154892073 154966278 - MGP_CASTEiJ_P0069885 Ski protein_coding unknown_likely_coding MGP_CASTEiJ_T0069886.1 MGP_CASTEiJ_G0028324.1 mouse_genomes_project 4 154892081 154932043 - Ski protein_coding processed_transcript MGP_CASTEiJ_T0101089.1 MGP_CASTEiJ_G0038002.1 mouse_genomes_project 4 130816788 130816925 + Snora16a snoRNA snoRNA MGP_CASTEiJ_T0067693.1 MGP_CASTEiJ_G0027870.1 mouse_genomes_project 4 121301244 121322724 - MGP_CASTEiJ_P0067693 Macf1 protein_coding protein_coding MGP_CASTEiJ_T0067694.1 MGP_CASTEiJ_G0027870.1 mouse_genomes_project 4 121301244 121660628 - MGP_CASTEiJ_P0067694 Macf1 protein_coding protein_coding MGP_CASTEiJ_T0067695.1 MGP_CASTEiJ_G0027870.1 mouse_genomes_project 4 121301327 121433039 - MGP_CASTEiJ_P0067695 Macf1 protein_coding protein_coding MGP_CASTEiJ_T0067696.1 MGP_CASTEiJ_G0027870.1 mouse_genomes_project 4 121301327 121317856 - MGP_CASTEiJ_P0067696 Macf1 protein_coding protein_coding MGP_CASTEiJ_T0067697.1 MGP_CASTEiJ_G0027870.1 mouse_genomes_project 4 121301327 121660628 - MGP_CASTEiJ_P0067697 Macf1 protein_coding protein_coding MGP_CASTEiJ_T0067698.1 MGP_CASTEiJ_G0027870.1 mouse_genomes_project 4 121301327 121459352 - MGP_CASTEiJ_P0067698 Macf1 protein_coding protein_coding MGP_CASTEiJ_T0067699.1 MGP_CASTEiJ_G0027870.1 mouse_genomes_project 4 121301327 121325158 - MGP_CASTEiJ_P0067699 Macf1 protein_coding protein_coding MGP_CASTEiJ_T0067700.1 MGP_CASTEiJ_G0027870.1 mouse_genomes_project 4 121301327 121507500 - MGP_CASTEiJ_P0067700 Macf1 protein_coding protein_coding MGP_CASTEiJ_T0067701.1 MGP_CASTEiJ_G0027870.1 mouse_genomes_project 4 121301329 121489383 - MGP_CASTEiJ_P0067701 Macf1 protein_coding protein_coding MGP_CASTEiJ_T0067702.1 MGP_CASTEiJ_G0027870.1 mouse_genomes_project 4 121301329 121660628 - MGP_CASTEiJ_P0067702 Macf1 protein_coding protein_coding MGP_CASTEiJ_T0067703.1 MGP_CASTEiJ_G0027870.1 mouse_genomes_project 4 121301331 121660628 - MGP_CASTEiJ_P0067703 Macf1 protein_coding protein_coding MGP_CASTEiJ_T0067704.1 MGP_CASTEiJ_G0027870.1 mouse_genomes_project 4 121335833 121343257 - MGP_CASTEiJ_P0067704 Macf1 protein_coding protein_coding MGP_CASTEiJ_T0067705.1 MGP_CASTEiJ_G0027870.1 mouse_genomes_project 4 121349992 121360343 - Macf1 protein_coding processed_transcript MGP_CASTEiJ_T0067706.1 MGP_CASTEiJ_G0027870.1 mouse_genomes_project 4 121412060 121637277 - MGP_CASTEiJ_P0067706 Macf1 protein_coding protein_coding MGP_CASTEiJ_T0067707.1 MGP_CASTEiJ_G0027870.1 mouse_genomes_project 4 121412060 121489572 - MGP_CASTEiJ_P0067707 Macf1 protein_coding protein_coding MGP_CASTEiJ_T0067708.1 MGP_CASTEiJ_G0027870.1 mouse_genomes_project 4 121501976 121528543 - Macf1 protein_coding processed_transcript MGP_CASTEiJ_T0069296.1 MGP_CASTEiJ_G0028224.1 mouse_genomes_project 4 146975429 147010992 - MGP_CASTEiJ_P0069296 Mfn2 protein_coding protein_coding MGP_CASTEiJ_T0069297.1 MGP_CASTEiJ_G0028224.1 mouse_genomes_project 4 146975429 147011009 - MGP_CASTEiJ_P0069297 Mfn2 protein_coding protein_coding MGP_CASTEiJ_T0069298.1 MGP_CASTEiJ_G0028224.1 mouse_genomes_project 4 146975846 147011003 - MGP_CASTEiJ_P0069298 Mfn2 protein_coding protein_coding MGP_CASTEiJ_T0069299.1 MGP_CASTEiJ_G0028224.1 mouse_genomes_project 4 146987119 147011003 - MGP_CASTEiJ_P0069299 Mfn2 protein_coding protein_coding MGP_CASTEiJ_T0069300.1 MGP_CASTEiJ_G0028224.1 mouse_genomes_project 4 146991333 146993149 - Mfn2 protein_coding processed_transcript MGP_CASTEiJ_T0069301.1 MGP_CASTEiJ_G0028224.1 mouse_genomes_project 4 146992959 147009702 - MGP_CASTEiJ_P0069301 Mfn2 protein_coding protein_coding MGP_CASTEiJ_T0069302.1 MGP_CASTEiJ_G0028224.1 mouse_genomes_project 4 147000217 147010963 - MGP_CASTEiJ_P0069302 Mfn2 protein_coding protein_coding MGP_CASTEiJ_T0014193.1 MGP_CASTEiJ_G0012356.1 mouse_genomes_project 4 95898038 95898510 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067441.1 MGP_CASTEiJ_G0027800.1 mouse_genomes_project 4 116244454 116263014 - MGP_CASTEiJ_P0067441 Tie1 protein_coding protein_coding MGP_CASTEiJ_T0067442.1 MGP_CASTEiJ_G0027800.1 mouse_genomes_project 4 116251319 116263073 - Tie1 protein_coding processed_transcript MGP_CASTEiJ_T0066835.1 MGP_CASTEiJ_G0027681.1 mouse_genomes_project 4 106154687 106169970 + MGP_CASTEiJ_P0066835 Echdc2 protein_coding protein_coding MGP_CASTEiJ_T0066836.1 MGP_CASTEiJ_G0027681.1 mouse_genomes_project 4 106154716 106169722 + MGP_CASTEiJ_P0066836 Echdc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066837.1 MGP_CASTEiJ_G0027681.1 mouse_genomes_project 4 106154716 106169969 + MGP_CASTEiJ_P0066837 Echdc2 protein_coding protein_coding MGP_CASTEiJ_T0066838.1 MGP_CASTEiJ_G0027681.1 mouse_genomes_project 4 106154738 106169968 + MGP_CASTEiJ_P0066838 Echdc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066839.1 MGP_CASTEiJ_G0027681.1 mouse_genomes_project 4 106154768 106169719 + MGP_CASTEiJ_P0066839 Echdc2 protein_coding protein_coding MGP_CASTEiJ_T0066840.1 MGP_CASTEiJ_G0027681.1 mouse_genomes_project 4 106160056 106169583 + MGP_CASTEiJ_P0066840 Echdc2 protein_coding protein_coding MGP_CASTEiJ_T0066841.1 MGP_CASTEiJ_G0027681.1 mouse_genomes_project 4 106160128 106165922 + Echdc2 protein_coding retained_intron MGP_CASTEiJ_T0066842.1 MGP_CASTEiJ_G0027681.1 mouse_genomes_project 4 106160484 106169969 + Echdc2 protein_coding processed_transcript MGP_CASTEiJ_T0066843.1 MGP_CASTEiJ_G0027681.1 mouse_genomes_project 4 106160495 106164371 + Echdc2 protein_coding processed_transcript MGP_CASTEiJ_T0066844.1 MGP_CASTEiJ_G0027681.1 mouse_genomes_project 4 106162578 106169810 + MGP_CASTEiJ_P0066844 Echdc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066845.1 MGP_CASTEiJ_G0027681.1 mouse_genomes_project 4 106163080 106167581 + Echdc2 protein_coding retained_intron MGP_CASTEiJ_T0066846.1 MGP_CASTEiJ_G0027681.1 mouse_genomes_project 4 106164210 106169710 + Echdc2 protein_coding retained_intron MGP_CASTEiJ_T0066847.1 MGP_CASTEiJ_G0027681.1 mouse_genomes_project 4 106164329 106169739 + MGP_CASTEiJ_P0066847 Echdc2 protein_coding protein_coding MGP_CASTEiJ_T0004447.1 MGP_CASTEiJ_G0003869.1 mouse_genomes_project 4 141464269 141474963 + 4930455G09Rik antisense antisense MGP_CASTEiJ_T0007686.1 MGP_CASTEiJ_G0006301.1 mouse_genomes_project 4 79335265 79337176 + lincRNA lincRNA MGP_CASTEiJ_T0013985.1 MGP_CASTEiJ_G0012148.1 mouse_genomes_project 4 18839474 18840896 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007825.1 MGP_CASTEiJ_G0006404.1 mouse_genomes_project 4 147520192 147523325 - Gm13200 lincRNA lincRNA MGP_CASTEiJ_T0065363.1 MGP_CASTEiJ_G0027353.1 mouse_genomes_project 4 41267911 41277882 + MGP_CASTEiJ_P0065363 Rgp1 protein_coding protein_coding MGP_CASTEiJ_T0065364.1 MGP_CASTEiJ_G0027353.1 mouse_genomes_project 4 41267931 41277880 + MGP_CASTEiJ_P0065364 Rgp1 protein_coding protein_coding MGP_CASTEiJ_T0065365.1 MGP_CASTEiJ_G0027353.1 mouse_genomes_project 4 41268150 41270092 + Rgp1 protein_coding processed_transcript MGP_CASTEiJ_T0065366.1 MGP_CASTEiJ_G0027353.1 mouse_genomes_project 4 41268154 41272302 + MGP_CASTEiJ_P0065366 Rgp1 protein_coding protein_coding MGP_CASTEiJ_T0065367.1 MGP_CASTEiJ_G0027353.1 mouse_genomes_project 4 41268179 41268807 + Rgp1 protein_coding retained_intron MGP_CASTEiJ_T0065368.1 MGP_CASTEiJ_G0027353.1 mouse_genomes_project 4 41268921 41270088 + Rgp1 protein_coding retained_intron MGP_CASTEiJ_T0065369.1 MGP_CASTEiJ_G0027353.1 mouse_genomes_project 4 41270381 41270888 + Rgp1 protein_coding retained_intron MGP_CASTEiJ_T0014314.1 MGP_CASTEiJ_G0012477.1 mouse_genomes_project 4 135514945 135515434 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099774.1 MGP_CASTEiJ_G0036687.1 mouse_genomes_project 4 22775413 22775583 + Gm24965 snRNA snRNA MGP_CASTEiJ_T0007697.1 MGP_CASTEiJ_G0006310.1 mouse_genomes_project 4 87736867 87741893 + lincRNA lincRNA MGP_CASTEiJ_T0068160.1 MGP_CASTEiJ_G0027965.1 mouse_genomes_project 4 128122647 128148168 - MGP_CASTEiJ_P0068160 Tmem39b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068161.1 MGP_CASTEiJ_G0027965.1 mouse_genomes_project 4 128122647 128148210 - MGP_CASTEiJ_P0068161 Tmem39b protein_coding protein_coding MGP_CASTEiJ_T0068162.1 MGP_CASTEiJ_G0027965.1 mouse_genomes_project 4 128122892 128125141 - Tmem39b protein_coding retained_intron MGP_CASTEiJ_T0068163.1 MGP_CASTEiJ_G0027965.1 mouse_genomes_project 4 128140498 128147992 - MGP_CASTEiJ_P0068163 Tmem39b protein_coding protein_coding MGP_CASTEiJ_T0068164.1 MGP_CASTEiJ_G0027965.1 mouse_genomes_project 4 128140574 128148116 - MGP_CASTEiJ_P0068164 Tmem39b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067971.1 MGP_CASTEiJ_G0027933.1 mouse_genomes_project 4 126964589 126967766 - MGP_CASTEiJ_P0067971 Tlr12 protein_coding protein_coding MGP_CASTEiJ_T0067972.1 MGP_CASTEiJ_G0027933.1 mouse_genomes_project 4 126966648 126967739 - Tlr12 protein_coding processed_transcript MGP_CASTEiJ_T0065865.1 MGP_CASTEiJ_G0027473.1 mouse_genomes_project 4 57653350 57689433 + MGP_CASTEiJ_P0065865 Ugcg protein_coding protein_coding MGP_CASTEiJ_T0065866.1 MGP_CASTEiJ_G0027473.1 mouse_genomes_project 4 57653654 57678619 + Ugcg protein_coding processed_transcript MGP_CASTEiJ_T0065867.1 MGP_CASTEiJ_G0027473.1 mouse_genomes_project 4 57653709 57687072 + MGP_CASTEiJ_P0065867 Ugcg protein_coding unknown_likely_coding MGP_CASTEiJ_T0065868.1 MGP_CASTEiJ_G0027473.1 mouse_genomes_project 4 57678135 57680325 + Ugcg protein_coding processed_transcript MGP_CASTEiJ_T0065869.1 MGP_CASTEiJ_G0027473.1 mouse_genomes_project 4 57679071 57680709 + Ugcg protein_coding processed_transcript MGP_CASTEiJ_T0065701.1 MGP_CASTEiJ_G0027431.1 mouse_genomes_project 4 50992487 50993447 + MGP_CASTEiJ_P0065701 Olfr275 protein_coding protein_coding MGP_CASTEiJ_T0065667.1 MGP_CASTEiJ_G0027422.1 mouse_genomes_project 4 47565177 47575440 + MGP_CASTEiJ_P0065667 Zfp189 protein_coding protein_coding MGP_CASTEiJ_T0065668.1 MGP_CASTEiJ_G0027422.1 mouse_genomes_project 4 47565218 47575440 + MGP_CASTEiJ_P0065668 Zfp189 protein_coding protein_coding MGP_CASTEiJ_T0065669.1 MGP_CASTEiJ_G0027422.1 mouse_genomes_project 4 47565281 47579000 + MGP_CASTEiJ_P0065669 Zfp189 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014288.1 MGP_CASTEiJ_G0012451.1 mouse_genomes_project 4 125282687 125282907 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014229.1 MGP_CASTEiJ_G0012392.1 mouse_genomes_project 4 107421845 107423957 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014222.1 MGP_CASTEiJ_G0012385.1 mouse_genomes_project 4 105707435 105707874 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010343.1 MGP_CASTEiJ_G0008531.1 mouse_genomes_project 4 137385862 137385931 - Mir7019 miRNA miRNA MGP_CASTEiJ_T0067045.1 MGP_CASTEiJ_G0027721.1 mouse_genomes_project 4 112052208 112279821 + MGP_CASTEiJ_P0067045 Trabd2b protein_coding protein_coding MGP_CASTEiJ_T0064865.1 MGP_CASTEiJ_G0027255.1 mouse_genomes_project 4 21804330 21846932 + Gpr63 protein_coding processed_transcript MGP_CASTEiJ_T0064866.1 MGP_CASTEiJ_G0027255.1 mouse_genomes_project 4 21811326 21848861 + MGP_CASTEiJ_P0064866 Gpr63 protein_coding protein_coding MGP_CASTEiJ_T0004386.1 MGP_CASTEiJ_G0003819.1 mouse_genomes_project 4 115141970 115152264 + Gm12828 antisense antisense MGP_CASTEiJ_T0013935.1 MGP_CASTEiJ_G0012098.1 mouse_genomes_project 4 1553303 1553671 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068266.1 MGP_CASTEiJ_G0027985.1 mouse_genomes_project 4 129341719 129355172 + MGP_CASTEiJ_P0068266 Matn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068267.1 MGP_CASTEiJ_G0027985.1 mouse_genomes_project 4 129343035 129356220 + MGP_CASTEiJ_P0068267 Matn1 protein_coding protein_coding MGP_CASTEiJ_T0067795.1 MGP_CASTEiJ_G0027894.1 mouse_genomes_project 4 123204231 123223919 - MGP_CASTEiJ_P0067795 Zc3h12a protein_coding unknown_likely_coding MGP_CASTEiJ_T0067796.1 MGP_CASTEiJ_G0027894.1 mouse_genomes_project 4 123212948 123223953 - MGP_CASTEiJ_P0067796 Zc3h12a protein_coding protein_coding MGP_CASTEiJ_T0067797.1 MGP_CASTEiJ_G0027894.1 mouse_genomes_project 4 123214609 123217029 - Zc3h12a protein_coding retained_intron MGP_CASTEiJ_T0101022.1 MGP_CASTEiJ_G0037935.1 mouse_genomes_project 4 12645311 12645379 - Gm26148 snoRNA snoRNA MGP_CASTEiJ_T0099839.1 MGP_CASTEiJ_G0036752.1 mouse_genomes_project 4 132551521 132551621 - Gm22523 snRNA snRNA MGP_CASTEiJ_T0001372.1 MGP_CASTEiJ_G0001302.1 mouse_genomes_project 4 139617230 139619875 - TEC TEC MGP_CASTEiJ_T0014271.1 MGP_CASTEiJ_G0012434.1 mouse_genomes_project 4 119589238 119589570 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066731.1 MGP_CASTEiJ_G0027665.1 mouse_genomes_project 4 105094457 105119209 + MGP_CASTEiJ_P0066731 Tmem59 protein_coding protein_coding MGP_CASTEiJ_T0066732.1 MGP_CASTEiJ_G0027665.1 mouse_genomes_project 4 105094585 105106716 + MGP_CASTEiJ_P0066732 Tmem59 protein_coding protein_coding MGP_CASTEiJ_T0066733.1 MGP_CASTEiJ_G0027665.1 mouse_genomes_project 4 105094585 105118912 + MGP_CASTEiJ_P0066733 Tmem59 protein_coding protein_coding MGP_CASTEiJ_T0066734.1 MGP_CASTEiJ_G0027665.1 mouse_genomes_project 4 105094725 105106919 + Tmem59 protein_coding retained_intron MGP_CASTEiJ_T0066735.1 MGP_CASTEiJ_G0027665.1 mouse_genomes_project 4 105094784 105118718 + MGP_CASTEiJ_P0066735 Tmem59 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066736.1 MGP_CASTEiJ_G0027665.1 mouse_genomes_project 4 105095070 105119207 + Tmem59 protein_coding processed_transcript MGP_CASTEiJ_T0014209.1 MGP_CASTEiJ_G0012372.1 mouse_genomes_project 4 101310685 101312039 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065517.1 MGP_CASTEiJ_G0027383.1 mouse_genomes_project 4 43165398 43204585 + MGP_CASTEiJ_P0065517 Dcaf10 protein_coding protein_coding MGP_CASTEiJ_T0065518.1 MGP_CASTEiJ_G0027383.1 mouse_genomes_project 4 43165417 43195095 + Dcaf10 protein_coding processed_transcript MGP_CASTEiJ_T0065519.1 MGP_CASTEiJ_G0027383.1 mouse_genomes_project 4 43165479 43199779 + Dcaf10 protein_coding processed_transcript MGP_CASTEiJ_T0065520.1 MGP_CASTEiJ_G0027383.1 mouse_genomes_project 4 43165895 43199170 + MGP_CASTEiJ_P0065520 Dcaf10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065521.1 MGP_CASTEiJ_G0027383.1 mouse_genomes_project 4 43194961 43200499 + MGP_CASTEiJ_P0065521 Dcaf10 protein_coding protein_coding MGP_CASTEiJ_T0065522.1 MGP_CASTEiJ_G0027384.1 mouse_genomes_project 4 43254479 43318826 - Shb protein_coding processed_transcript MGP_CASTEiJ_T0065523.1 MGP_CASTEiJ_G0027384.1 mouse_genomes_project 4 43254479 43366582 - MGP_CASTEiJ_P0065523 Shb protein_coding protein_coding MGP_CASTEiJ_T0065524.1 MGP_CASTEiJ_G0027384.1 mouse_genomes_project 4 43277415 43328894 - Shb protein_coding processed_transcript MGP_CASTEiJ_T0065525.1 MGP_CASTEiJ_G0027384.1 mouse_genomes_project 4 43280210 43325452 - Shb protein_coding retained_intron MGP_CASTEiJ_T0065526.1 MGP_CASTEiJ_G0027384.1 mouse_genomes_project 4 43292452 43325844 - MGP_CASTEiJ_P0065526 Shb protein_coding protein_coding MGP_CASTEiJ_T0065527.1 MGP_CASTEiJ_G0027384.1 mouse_genomes_project 4 43292643 43368744 - MGP_CASTEiJ_P0065527 Shb protein_coding protein_coding MGP_CASTEiJ_T0065066.1 MGP_CASTEiJ_G0027301.1 mouse_genomes_project 4 38318268 38343477 - MGP_CASTEiJ_P0065066 Smu1 protein_coding protein_coding MGP_CASTEiJ_T0065067.1 MGP_CASTEiJ_G0027301.1 mouse_genomes_project 4 38326630 38343437 - Smu1 protein_coding processed_transcript MGP_CASTEiJ_T0065068.1 MGP_CASTEiJ_G0027301.1 mouse_genomes_project 4 38339953 38343385 - Smu1 protein_coding processed_transcript MGP_CASTEiJ_T0065069.1 MGP_CASTEiJ_G0027301.1 mouse_genomes_project 4 38341239 38342952 - Smu1 protein_coding processed_transcript MGP_CASTEiJ_T0007638.1 MGP_CASTEiJ_G0006260.1 mouse_genomes_project 4 37889200 37893654 + 4930509K18Rik lincRNA lincRNA MGP_CASTEiJ_T0007809.1 MGP_CASTEiJ_G0006389.1 mouse_genomes_project 4 137274315 137274791 + 2310026L22Rik lincRNA lincRNA MGP_CASTEiJ_T0069503.1 MGP_CASTEiJ_G0028262.1 mouse_genomes_project 4 149202507 149260711 - MGP_CASTEiJ_P0069503 Spsb1 protein_coding protein_coding MGP_CASTEiJ_T0069504.1 MGP_CASTEiJ_G0028262.1 mouse_genomes_project 4 149204192 149215921 - MGP_CASTEiJ_P0069504 Spsb1 protein_coding protein_coding MGP_CASTEiJ_T0069505.1 MGP_CASTEiJ_G0028262.1 mouse_genomes_project 4 149204439 149213398 - MGP_CASTEiJ_P0069505 Spsb1 protein_coding protein_coding MGP_CASTEiJ_T0069506.1 MGP_CASTEiJ_G0028262.1 mouse_genomes_project 4 149212615 149259475 - MGP_CASTEiJ_P0069506 Spsb1 protein_coding protein_coding MGP_CASTEiJ_T0069507.1 MGP_CASTEiJ_G0028262.1 mouse_genomes_project 4 149213099 149228235 - MGP_CASTEiJ_P0069507 Spsb1 protein_coding protein_coding MGP_CASTEiJ_T0069508.1 MGP_CASTEiJ_G0028262.1 mouse_genomes_project 4 149213103 149237248 - MGP_CASTEiJ_P0069508 Spsb1 protein_coding protein_coding MGP_CASTEiJ_T0069509.1 MGP_CASTEiJ_G0028262.1 mouse_genomes_project 4 149213108 149248288 - MGP_CASTEiJ_P0069509 Spsb1 protein_coding protein_coding MGP_CASTEiJ_T0069510.1 MGP_CASTEiJ_G0028262.1 mouse_genomes_project 4 149213157 149251762 - MGP_CASTEiJ_P0069510 Spsb1 protein_coding protein_coding MGP_CASTEiJ_T0069511.1 MGP_CASTEiJ_G0028262.1 mouse_genomes_project 4 149213250 149260711 - Spsb1 protein_coding processed_transcript MGP_CASTEiJ_T0069512.1 MGP_CASTEiJ_G0028262.1 mouse_genomes_project 4 149215669 149260699 - Spsb1 protein_coding processed_transcript MGP_CASTEiJ_T0069476.1 MGP_CASTEiJ_G0028257.1 mouse_genomes_project 4 148782893 148837931 + MGP_CASTEiJ_P0069476 Ctnnbip1 protein_coding protein_coding MGP_CASTEiJ_T0069477.1 MGP_CASTEiJ_G0028257.1 mouse_genomes_project 4 148814835 148836003 + MGP_CASTEiJ_P0069477 Ctnnbip1 protein_coding protein_coding MGP_CASTEiJ_T0014104.1 MGP_CASTEiJ_G0012267.1 mouse_genomes_project 4 57844453 57845017 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067564.1 MGP_CASTEiJ_G0027832.1 mouse_genomes_project 4 117511392 117513157 + MGP_CASTEiJ_P0067564 Guca2a protein_coding protein_coding MGP_CASTEiJ_T0017326.1 MGP_CASTEiJ_G0014878.1 mouse_genomes_project 4 95346572 95349766 - Gm12676 processed_transcript processed_transcript MGP_CASTEiJ_T0007730.1 MGP_CASTEiJ_G0006335.1 mouse_genomes_project 4 105717408 105722729 + Gm12907 lincRNA lincRNA MGP_CASTEiJ_T0069673.1 MGP_CASTEiJ_G0028289.1 mouse_genomes_project 4 151695009 151698630 + MGP_CASTEiJ_P0069673 Hes2 protein_coding protein_coding MGP_CASTEiJ_T0069674.1 MGP_CASTEiJ_G0028289.1 mouse_genomes_project 4 151695691 151696743 + Hes2 protein_coding processed_transcript MGP_CASTEiJ_T0010296.1 MGP_CASTEiJ_G0008484.1 mouse_genomes_project 4 46190233 46190330 - Mir1958 miRNA miRNA MGP_CASTEiJ_T0011246.1 MGP_CASTEiJ_G0009434.1 mouse_genomes_project 4 103798816 103799127 - Gm24363 misc_RNA misc_RNA MGP_CASTEiJ_T0004463.1 MGP_CASTEiJ_G0003879.1 mouse_genomes_project 4 148589637 148590922 + Ube4bos3 antisense antisense MGP_CASTEiJ_T0014073.1 MGP_CASTEiJ_G0012236.1 mouse_genomes_project 4 47421885 47422006 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069920.1 MGP_CASTEiJ_G0028329.1 mouse_genomes_project 4 155230574 155231874 + Tmem52 protein_coding retained_intron MGP_CASTEiJ_T0069921.1 MGP_CASTEiJ_G0028329.1 mouse_genomes_project 4 155230574 155232318 + MGP_CASTEiJ_P0069921 Tmem52 protein_coding protein_coding MGP_CASTEiJ_T0069922.1 MGP_CASTEiJ_G0028329.1 mouse_genomes_project 4 155230574 155232318 + MGP_CASTEiJ_P0069922 Tmem52 protein_coding protein_coding MGP_CASTEiJ_T0069923.1 MGP_CASTEiJ_G0028329.1 mouse_genomes_project 4 155230591 155232317 + MGP_CASTEiJ_P0069923 Tmem52 protein_coding protein_coding MGP_CASTEiJ_T0069924.1 MGP_CASTEiJ_G0028329.1 mouse_genomes_project 4 155230605 155232249 + Tmem52 protein_coding retained_intron MGP_CASTEiJ_T0069011.1 MGP_CASTEiJ_G0028145.1 mouse_genomes_project 4 138527986 138530219 - Mrto4 protein_coding processed_transcript MGP_CASTEiJ_T0069012.1 MGP_CASTEiJ_G0028145.1 mouse_genomes_project 4 138527996 138532879 - MGP_CASTEiJ_P0069012 Mrto4 protein_coding protein_coding MGP_CASTEiJ_T0069013.1 MGP_CASTEiJ_G0028145.1 mouse_genomes_project 4 138528007 138532916 - MGP_CASTEiJ_P0069013 Mrto4 protein_coding protein_coding MGP_CASTEiJ_T0069014.1 MGP_CASTEiJ_G0028145.1 mouse_genomes_project 4 138528713 138530237 - Mrto4 protein_coding retained_intron MGP_CASTEiJ_T0069015.1 MGP_CASTEiJ_G0028145.1 mouse_genomes_project 4 138529377 138533114 - Mrto4 protein_coding retained_intron MGP_CASTEiJ_T0069016.1 MGP_CASTEiJ_G0028145.1 mouse_genomes_project 4 138530490 138532891 - Mrto4 protein_coding retained_intron MGP_CASTEiJ_T0067460.1 MGP_CASTEiJ_G0027807.1 mouse_genomes_project 4 116486524 116487463 + MGP_CASTEiJ_P0067460 Olfr1341 protein_coding protein_coding MGP_CASTEiJ_T0004306.1 MGP_CASTEiJ_G0003760.1 mouse_genomes_project 4 29762935 29775331 - Bach2os antisense antisense MGP_CASTEiJ_T0004307.1 MGP_CASTEiJ_G0003760.1 mouse_genomes_project 4 29766318 29775286 - Bach2os antisense antisense MGP_CASTEiJ_T0004308.1 MGP_CASTEiJ_G0003760.1 mouse_genomes_project 4 29768862 29775377 - Bach2os antisense antisense MGP_CASTEiJ_T0069238.1 MGP_CASTEiJ_G0028196.1 mouse_genomes_project 4 142811211 142855839 - MGP_CASTEiJ_P0069238 Pdpn protein_coding unknown_likely_coding MGP_CASTEiJ_T0069239.1 MGP_CASTEiJ_G0028196.1 mouse_genomes_project 4 142812128 142855787 - MGP_CASTEiJ_P0069239 Pdpn protein_coding protein_coding MGP_CASTEiJ_T0068256.1 MGP_CASTEiJ_G0027984.1 mouse_genomes_project 4 129308637 129333076 + MGP_CASTEiJ_P0068256 Laptm5 protein_coding protein_coding MGP_CASTEiJ_T0068257.1 MGP_CASTEiJ_G0027984.1 mouse_genomes_project 4 129308815 129324053 + MGP_CASTEiJ_P0068257 Laptm5 protein_coding protein_coding MGP_CASTEiJ_T0068258.1 MGP_CASTEiJ_G0027984.1 mouse_genomes_project 4 129308821 129320450 + Laptm5 protein_coding processed_transcript MGP_CASTEiJ_T0068259.1 MGP_CASTEiJ_G0027984.1 mouse_genomes_project 4 129308827 129324056 + Laptm5 protein_coding processed_transcript MGP_CASTEiJ_T0068260.1 MGP_CASTEiJ_G0027984.1 mouse_genomes_project 4 129308828 129321747 + Laptm5 protein_coding processed_transcript MGP_CASTEiJ_T0068261.1 MGP_CASTEiJ_G0027984.1 mouse_genomes_project 4 129308865 129330710 + MGP_CASTEiJ_P0068261 Laptm5 protein_coding protein_coding MGP_CASTEiJ_T0068262.1 MGP_CASTEiJ_G0027984.1 mouse_genomes_project 4 129310953 129324074 + Laptm5 protein_coding processed_transcript MGP_CASTEiJ_T0068263.1 MGP_CASTEiJ_G0027984.1 mouse_genomes_project 4 129311151 129322234 + Laptm5 protein_coding processed_transcript MGP_CASTEiJ_T0068264.1 MGP_CASTEiJ_G0027984.1 mouse_genomes_project 4 129311434 129332121 + MGP_CASTEiJ_P0068264 Laptm5 protein_coding protein_coding MGP_CASTEiJ_T0068265.1 MGP_CASTEiJ_G0027984.1 mouse_genomes_project 4 129327407 129330994 + Laptm5 protein_coding processed_transcript MGP_CASTEiJ_T0007733.1 MGP_CASTEiJ_G0006337.1 mouse_genomes_project 4 105912897 105919726 + 4930407G08Rik lincRNA lincRNA MGP_CASTEiJ_T0067713.1 MGP_CASTEiJ_G0027873.1 mouse_genomes_project 4 121764424 121789780 + Rhbdl2 protein_coding processed_transcript MGP_CASTEiJ_T0067714.1 MGP_CASTEiJ_G0027873.1 mouse_genomes_project 4 121764425 121817230 + MGP_CASTEiJ_P0067714 Rhbdl2 protein_coding protein_coding MGP_CASTEiJ_T0067715.1 MGP_CASTEiJ_G0027873.1 mouse_genomes_project 4 121774927 121788419 + Rhbdl2 protein_coding processed_transcript MGP_CASTEiJ_T0067716.1 MGP_CASTEiJ_G0027873.1 mouse_genomes_project 4 121788191 121817230 + MGP_CASTEiJ_P0067716 Rhbdl2 protein_coding protein_coding MGP_CASTEiJ_T0064797.1 MGP_CASTEiJ_G0027244.1 mouse_genomes_project 4 18531905 18556609 + MGP_CASTEiJ_P0064797 Ccnc protein_coding protein_coding MGP_CASTEiJ_T0064798.1 MGP_CASTEiJ_G0027244.1 mouse_genomes_project 4 18531930 18556609 + MGP_CASTEiJ_P0064798 Ccnc protein_coding protein_coding MGP_CASTEiJ_T0064799.1 MGP_CASTEiJ_G0027244.1 mouse_genomes_project 4 18531930 18570229 + MGP_CASTEiJ_P0064799 Ccnc protein_coding protein_coding MGP_CASTEiJ_T0064800.1 MGP_CASTEiJ_G0027244.1 mouse_genomes_project 4 18531945 18542163 + Ccnc protein_coding processed_transcript MGP_CASTEiJ_T0064801.1 MGP_CASTEiJ_G0027244.1 mouse_genomes_project 4 18531957 18553551 + Ccnc protein_coding processed_transcript MGP_CASTEiJ_T0064802.1 MGP_CASTEiJ_G0027244.1 mouse_genomes_project 4 18531959 18553551 + MGP_CASTEiJ_P0064802 Ccnc protein_coding protein_coding MGP_CASTEiJ_T0064803.1 MGP_CASTEiJ_G0027244.1 mouse_genomes_project 4 18531962 18536200 + Ccnc protein_coding processed_transcript MGP_CASTEiJ_T0064804.1 MGP_CASTEiJ_G0027244.1 mouse_genomes_project 4 18531971 18554145 + Ccnc protein_coding processed_transcript MGP_CASTEiJ_T0066890.1 MGP_CASTEiJ_G0027691.1 mouse_genomes_project 4 106654945 106803666 - MGP_CASTEiJ_P0066890 protein_coding protein_coding MGP_CASTEiJ_T0066891.1 MGP_CASTEiJ_G0027691.1 mouse_genomes_project 4 106654946 106803381 - MGP_CASTEiJ_P0066891 protein_coding protein_coding MGP_CASTEiJ_T0066892.1 MGP_CASTEiJ_G0027691.1 mouse_genomes_project 4 106656706 106740850 - MGP_CASTEiJ_P0066892 protein_coding protein_coding MGP_CASTEiJ_T0069847.1 MGP_CASTEiJ_G0028318.1 mouse_genomes_project 4 154689829 154691278 + MGP_CASTEiJ_P0069847 Hes5 protein_coding protein_coding MGP_CASTEiJ_T0069848.1 MGP_CASTEiJ_G0028318.1 mouse_genomes_project 4 154689877 154690313 + Hes5 protein_coding processed_transcript MGP_CASTEiJ_T0007673.1 MGP_CASTEiJ_G0006288.1 mouse_genomes_project 4 59559739 59572733 + Gm11210 lincRNA lincRNA MGP_CASTEiJ_T0011224.1 MGP_CASTEiJ_G0009412.1 mouse_genomes_project 4 8573768 8574084 + Gm22477 misc_RNA misc_RNA MGP_CASTEiJ_T0066796.1 MGP_CASTEiJ_G0027675.1 mouse_genomes_project 4 105831039 105838734 + MGP_CASTEiJ_P0066796 Magoh protein_coding protein_coding MGP_CASTEiJ_T0066797.1 MGP_CASTEiJ_G0027675.1 mouse_genomes_project 4 105834265 105838697 + Magoh protein_coding processed_transcript MGP_CASTEiJ_T0010316.1 MGP_CASTEiJ_G0008504.1 mouse_genomes_project 4 116972736 116972802 + Mir1957a miRNA miRNA MGP_CASTEiJ_T0007606.1 MGP_CASTEiJ_G0006233.1 mouse_genomes_project 4 5833730 5836379 - Gm26548 lincRNA lincRNA MGP_CASTEiJ_T0010334.1 MGP_CASTEiJ_G0008522.1 mouse_genomes_project 4 132372122 132372173 - Mir7227 miRNA miRNA MGP_CASTEiJ_T0068138.1 MGP_CASTEiJ_G0027962.1 mouse_genomes_project 4 128062471 128063613 - Ccdc28b protein_coding processed_transcript MGP_CASTEiJ_T0068139.1 MGP_CASTEiJ_G0027962.1 mouse_genomes_project 4 128062471 128066945 - MGP_CASTEiJ_P0068139 Ccdc28b protein_coding protein_coding MGP_CASTEiJ_T0068140.1 MGP_CASTEiJ_G0027962.1 mouse_genomes_project 4 128062472 128063936 - Ccdc28b protein_coding retained_intron MGP_CASTEiJ_T0068141.1 MGP_CASTEiJ_G0027962.1 mouse_genomes_project 4 128062473 128064442 - Ccdc28b protein_coding processed_transcript MGP_CASTEiJ_T0068142.1 MGP_CASTEiJ_G0027962.1 mouse_genomes_project 4 128062473 128066835 - MGP_CASTEiJ_P0068142 Ccdc28b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068143.1 MGP_CASTEiJ_G0027962.1 mouse_genomes_project 4 128063496 128066876 - MGP_CASTEiJ_P0068143 Ccdc28b protein_coding protein_coding MGP_CASTEiJ_T0068144.1 MGP_CASTEiJ_G0027962.1 mouse_genomes_project 4 128063769 128065728 - Ccdc28b protein_coding processed_transcript MGP_CASTEiJ_T0068145.1 MGP_CASTEiJ_G0027962.1 mouse_genomes_project 4 128064023 128066884 - MGP_CASTEiJ_P0068145 Ccdc28b protein_coding protein_coding MGP_CASTEiJ_T0068146.1 MGP_CASTEiJ_G0027962.1 mouse_genomes_project 4 128065175 128066842 - Ccdc28b protein_coding retained_intron MGP_CASTEiJ_T0068147.1 MGP_CASTEiJ_G0027962.1 mouse_genomes_project 4 128066302 128066897 - Ccdc28b protein_coding retained_intron MGP_CASTEiJ_T0014211.1 MGP_CASTEiJ_G0012374.1 mouse_genomes_project 4 101715647 101716630 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067467.1 MGP_CASTEiJ_G0027813.1 mouse_genomes_project 4 116711478 116712560 + MGP_CASTEiJ_P0067467 Olfr1330 protein_coding protein_coding MGP_CASTEiJ_T0014137.1 MGP_CASTEiJ_G0012300.1 mouse_genomes_project 4 72446027 72446746 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064521.1 MGP_CASTEiJ_G0027177.1 mouse_genomes_project 4 398935 403285 - MGP_CASTEiJ_P0064521 Rps20 protein_coding protein_coding MGP_CASTEiJ_T0064522.1 MGP_CASTEiJ_G0027177.1 mouse_genomes_project 4 402084 402853 - Rps20 protein_coding retained_intron MGP_CASTEiJ_T0064523.1 MGP_CASTEiJ_G0027177.1 mouse_genomes_project 4 402087 403108 - Rps20 protein_coding retained_intron MGP_CASTEiJ_T0014180.1 MGP_CASTEiJ_G0012343.1 mouse_genomes_project 4 90867466 90868344 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067852.1 MGP_CASTEiJ_G0027905.1 mouse_genomes_project 4 124447439 124461814 + MGP_CASTEiJ_P0067852 Trappc3 protein_coding protein_coding MGP_CASTEiJ_T0067853.1 MGP_CASTEiJ_G0027905.1 mouse_genomes_project 4 124447514 124459682 + Trappc3 protein_coding processed_transcript MGP_CASTEiJ_T0067854.1 MGP_CASTEiJ_G0027905.1 mouse_genomes_project 4 124447558 124464609 + MGP_CASTEiJ_P0067854 Trappc3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0007630.1 MGP_CASTEiJ_G0006252.1 mouse_genomes_project 4 26060804 26082529 + Gm11917 lincRNA lincRNA MGP_CASTEiJ_T0068739.1 MGP_CASTEiJ_G0028082.1 mouse_genomes_project 4 134776669 134798695 + MGP_CASTEiJ_P0068739 Fuca1 protein_coding protein_coding MGP_CASTEiJ_T0068740.1 MGP_CASTEiJ_G0028082.1 mouse_genomes_project 4 134786015 134790873 + Fuca1 protein_coding processed_transcript MGP_CASTEiJ_T0068741.1 MGP_CASTEiJ_G0028082.1 mouse_genomes_project 4 134789095 134795503 + Fuca1 protein_coding processed_transcript MGP_CASTEiJ_T0068742.1 MGP_CASTEiJ_G0028082.1 mouse_genomes_project 4 134789222 134791513 + Fuca1 protein_coding processed_transcript MGP_CASTEiJ_T0068743.1 MGP_CASTEiJ_G0028082.1 mouse_genomes_project 4 134792879 134795503 + Fuca1 protein_coding processed_transcript MGP_CASTEiJ_T0007743.1 MGP_CASTEiJ_G0006347.1 mouse_genomes_project 4 118553844 118560626 + Gm12860 lincRNA lincRNA MGP_CASTEiJ_T0066219.1 MGP_CASTEiJ_G0027547.1 mouse_genomes_project 4 83851749 83941809 - Saxo1 protein_coding processed_transcript MGP_CASTEiJ_T0066220.1 MGP_CASTEiJ_G0027547.1 mouse_genomes_project 4 83851749 83962646 - MGP_CASTEiJ_P0066220 Saxo1 protein_coding protein_coding MGP_CASTEiJ_T0066221.1 MGP_CASTEiJ_G0027547.1 mouse_genomes_project 4 83876931 83962338 - Saxo1 protein_coding processed_transcript MGP_CASTEiJ_T0066222.1 MGP_CASTEiJ_G0027547.1 mouse_genomes_project 4 83879471 83962671 - Saxo1 protein_coding processed_transcript MGP_CASTEiJ_T0066443.1 MGP_CASTEiJ_G0027609.1 mouse_genomes_project 4 96463728 96469105 - MGP_CASTEiJ_P0066443 I0C0044D17Rik protein_coding protein_coding MGP_CASTEiJ_T0066444.1 MGP_CASTEiJ_G0027609.1 mouse_genomes_project 4 96465075 96465585 - MGP_CASTEiJ_P0066444 I0C0044D17Rik protein_coding protein_coding MGP_CASTEiJ_T0014084.1 MGP_CASTEiJ_G0012247.1 mouse_genomes_project 4 51874435 51875478 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102336.1 MGP_CASTEiJ_G0039061.1 mouse_genomes_project 4 143917387 143918062 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0064583.1 MGP_CASTEiJ_G0027190.1 mouse_genomes_project 4 2981105 2996538 + MGP_CASTEiJ_P0064583 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0098380.1 MGP_CASTEiJ_G0035311.1 mouse_genomes_project 4 58037398 58037870 + pseudogene pseudogene MGP_CASTEiJ_T0014175.1 MGP_CASTEiJ_G0012338.1 mouse_genomes_project 4 88951589 88952158 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064712.1 MGP_CASTEiJ_G0027217.1 mouse_genomes_project 4 8827044 8845528 - MGP_CASTEiJ_P0064712 Fam92a protein_coding unknown_likely_coding MGP_CASTEiJ_T0064713.1 MGP_CASTEiJ_G0027217.1 mouse_genomes_project 4 8827044 8845525 - MGP_CASTEiJ_P0064713 Fam92a protein_coding unknown_likely_coding MGP_CASTEiJ_T0064714.1 MGP_CASTEiJ_G0027217.1 mouse_genomes_project 4 8829404 8845760 - MGP_CASTEiJ_P0064714 Fam92a protein_coding protein_coding MGP_CASTEiJ_T0064715.1 MGP_CASTEiJ_G0027217.1 mouse_genomes_project 4 8829404 8845780 - MGP_CASTEiJ_P0064715 Fam92a protein_coding protein_coding MGP_CASTEiJ_T0064716.1 MGP_CASTEiJ_G0027217.1 mouse_genomes_project 4 8829466 8844933 - MGP_CASTEiJ_P0064716 Fam92a protein_coding protein_coding MGP_CASTEiJ_T0064717.1 MGP_CASTEiJ_G0027217.1 mouse_genomes_project 4 8837936 8845636 - MGP_CASTEiJ_P0064717 Fam92a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064718.1 MGP_CASTEiJ_G0027217.1 mouse_genomes_project 4 8839167 8845760 - Fam92a protein_coding retained_intron MGP_CASTEiJ_T0064719.1 MGP_CASTEiJ_G0027217.1 mouse_genomes_project 4 8839430 8845499 - Fam92a protein_coding retained_intron MGP_CASTEiJ_T0102332.1 MGP_CASTEiJ_G0039057.1 mouse_genomes_project 4 120631508 120650621 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0069048.1 MGP_CASTEiJ_G0028155.1 mouse_genomes_project 4 139819626 139904915 - MGP_CASTEiJ_P0069048 Arhgef10l protein_coding unknown_likely_coding MGP_CASTEiJ_T0069049.1 MGP_CASTEiJ_G0028155.1 mouse_genomes_project 4 139819626 139970779 - MGP_CASTEiJ_P0069049 Arhgef10l protein_coding unknown_likely_coding MGP_CASTEiJ_T0069050.1 MGP_CASTEiJ_G0028155.1 mouse_genomes_project 4 139819626 139970779 - MGP_CASTEiJ_P0069050 Arhgef10l protein_coding protein_coding MGP_CASTEiJ_T0069051.1 MGP_CASTEiJ_G0028155.1 mouse_genomes_project 4 139819631 139890539 - MGP_CASTEiJ_P0069051 Arhgef10l protein_coding protein_coding MGP_CASTEiJ_T0069052.1 MGP_CASTEiJ_G0028155.1 mouse_genomes_project 4 139819631 139884140 - MGP_CASTEiJ_P0069052 Arhgef10l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069053.1 MGP_CASTEiJ_G0028155.1 mouse_genomes_project 4 139819631 139970793 - MGP_CASTEiJ_P0069053 Arhgef10l protein_coding protein_coding MGP_CASTEiJ_T0069054.1 MGP_CASTEiJ_G0028155.1 mouse_genomes_project 4 139819631 139970793 - MGP_CASTEiJ_P0069054 Arhgef10l protein_coding protein_coding MGP_CASTEiJ_T0069055.1 MGP_CASTEiJ_G0028155.1 mouse_genomes_project 4 139851834 139875423 - MGP_CASTEiJ_P0069055 Arhgef10l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069056.1 MGP_CASTEiJ_G0028155.1 mouse_genomes_project 4 139882462 139890523 - MGP_CASTEiJ_P0069056 Arhgef10l protein_coding protein_coding MGP_CASTEiJ_T0069057.1 MGP_CASTEiJ_G0028155.1 mouse_genomes_project 4 139889578 139902778 - Arhgef10l protein_coding retained_intron MGP_CASTEiJ_T0069058.1 MGP_CASTEiJ_G0028155.1 mouse_genomes_project 4 139902669 139971403 - MGP_CASTEiJ_P0069058 Arhgef10l protein_coding protein_coding MGP_CASTEiJ_T0069059.1 MGP_CASTEiJ_G0028155.1 mouse_genomes_project 4 139903922 139931314 - MGP_CASTEiJ_P0069059 Arhgef10l protein_coding protein_coding MGP_CASTEiJ_T0068412.1 MGP_CASTEiJ_G0028014.1 mouse_genomes_project 4 131599241 131648573 + Ahdc1 protein_coding processed_transcript MGP_CASTEiJ_T0068413.1 MGP_CASTEiJ_G0028014.1 mouse_genomes_project 4 131599415 131666941 + MGP_CASTEiJ_P0068413 Ahdc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068414.1 MGP_CASTEiJ_G0028014.1 mouse_genomes_project 4 131599487 131667304 + MGP_CASTEiJ_P0068414 Ahdc1 protein_coding protein_coding MGP_CASTEiJ_T0068415.1 MGP_CASTEiJ_G0028014.1 mouse_genomes_project 4 131599487 131667551 + MGP_CASTEiJ_P0068415 Ahdc1 protein_coding protein_coding MGP_CASTEiJ_T0068416.1 MGP_CASTEiJ_G0028014.1 mouse_genomes_project 4 131599524 131648864 + Ahdc1 protein_coding processed_transcript MGP_CASTEiJ_T0068417.1 MGP_CASTEiJ_G0028014.1 mouse_genomes_project 4 131599546 131643043 + Ahdc1 protein_coding processed_transcript MGP_CASTEiJ_T0068418.1 MGP_CASTEiJ_G0028014.1 mouse_genomes_project 4 131599819 131667090 + Ahdc1 protein_coding processed_transcript MGP_CASTEiJ_T0068419.1 MGP_CASTEiJ_G0028014.1 mouse_genomes_project 4 131600031 131648575 + Ahdc1 protein_coding processed_transcript MGP_CASTEiJ_T0068420.1 MGP_CASTEiJ_G0028014.1 mouse_genomes_project 4 131600073 131649529 + Ahdc1 protein_coding processed_transcript MGP_CASTEiJ_T0068421.1 MGP_CASTEiJ_G0028014.1 mouse_genomes_project 4 131600185 131667091 + MGP_CASTEiJ_P0068421 Ahdc1 protein_coding protein_coding MGP_CASTEiJ_T0068422.1 MGP_CASTEiJ_G0028014.1 mouse_genomes_project 4 131627410 131666764 + MGP_CASTEiJ_P0068422 Ahdc1 protein_coding protein_coding MGP_CASTEiJ_T0068423.1 MGP_CASTEiJ_G0028014.1 mouse_genomes_project 4 131654004 131661548 + Ahdc1 protein_coding processed_transcript MGP_CASTEiJ_T0004440.1 MGP_CASTEiJ_G0003864.1 mouse_genomes_project 4 140801386 140812518 + Gm13075 antisense antisense MGP_CASTEiJ_T0004441.1 MGP_CASTEiJ_G0003864.1 mouse_genomes_project 4 140801414 140815314 + Gm13075 antisense antisense MGP_CASTEiJ_T0068128.1 MGP_CASTEiJ_G0027960.1 mouse_genomes_project 4 128051473 128057435 - MGP_CASTEiJ_P0068128 Dcdc2b protein_coding protein_coding MGP_CASTEiJ_T0068129.1 MGP_CASTEiJ_G0027960.1 mouse_genomes_project 4 128051671 128052383 - Dcdc2b protein_coding retained_intron MGP_CASTEiJ_T0068130.1 MGP_CASTEiJ_G0027960.1 mouse_genomes_project 4 128051882 128057432 - MGP_CASTEiJ_P0068130 Dcdc2b protein_coding protein_coding MGP_CASTEiJ_T0064678.1 MGP_CASTEiJ_G0027206.1 mouse_genomes_project 4 8097416 8164631 + MGP_CASTEiJ_P0064678 1110037F02Rik protein_coding protein_coding MGP_CASTEiJ_T0064679.1 MGP_CASTEiJ_G0027206.1 mouse_genomes_project 4 8097416 8140488 + MGP_CASTEiJ_P0064679 1110037F02Rik protein_coding protein_coding MGP_CASTEiJ_T0064680.1 MGP_CASTEiJ_G0027206.1 mouse_genomes_project 4 8097501 8164631 + MGP_CASTEiJ_P0064680 1110037F02Rik protein_coding protein_coding MGP_CASTEiJ_T0007628.1 MGP_CASTEiJ_G0006250.1 mouse_genomes_project 4 21292597 21293116 - Gm27243 lincRNA lincRNA MGP_CASTEiJ_T0099791.1 MGP_CASTEiJ_G0036704.1 mouse_genomes_project 4 56160439 56160543 + Gm24277 snRNA snRNA MGP_CASTEiJ_T0064755.1 MGP_CASTEiJ_G0027228.1 mouse_genomes_project 4 12688062 12725962 + MGP_CASTEiJ_P0064755 Nbn protein_coding protein_coding MGP_CASTEiJ_T0064756.1 MGP_CASTEiJ_G0027228.1 mouse_genomes_project 4 12688104 12714358 + MGP_CASTEiJ_P0064756 Nbn protein_coding protein_coding MGP_CASTEiJ_T0065370.1 MGP_CASTEiJ_G0027354.1 mouse_genomes_project 4 41272387 41273666 - MGP_CASTEiJ_P0065370 Msmp protein_coding protein_coding MGP_CASTEiJ_T0069822.1 MGP_CASTEiJ_G0028312.1 mouse_genomes_project 4 154036716 154050512 + MGP_CASTEiJ_P0069822 B230104I21Rik protein_coding protein_coding MGP_CASTEiJ_T0064814.1 MGP_CASTEiJ_G0027247.1 mouse_genomes_project 4 18669204 18699354 + MGP_CASTEiJ_P0064814 Pnisr protein_coding protein_coding MGP_CASTEiJ_T0064815.1 MGP_CASTEiJ_G0027247.1 mouse_genomes_project 4 18669670 18696631 + MGP_CASTEiJ_P0064815 Pnisr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064816.1 MGP_CASTEiJ_G0027247.1 mouse_genomes_project 4 18669677 18699346 + MGP_CASTEiJ_P0064816 Pnisr protein_coding protein_coding MGP_CASTEiJ_T0064817.1 MGP_CASTEiJ_G0027247.1 mouse_genomes_project 4 18669680 18682098 + Pnisr protein_coding processed_transcript MGP_CASTEiJ_T0064818.1 MGP_CASTEiJ_G0027247.1 mouse_genomes_project 4 18669680 18694212 + MGP_CASTEiJ_P0064818 Pnisr protein_coding protein_coding MGP_CASTEiJ_T0064819.1 MGP_CASTEiJ_G0027247.1 mouse_genomes_project 4 18669686 18679621 + Pnisr protein_coding processed_transcript MGP_CASTEiJ_T0064820.1 MGP_CASTEiJ_G0027247.1 mouse_genomes_project 4 18669695 18676546 + Pnisr protein_coding processed_transcript MGP_CASTEiJ_T0064821.1 MGP_CASTEiJ_G0027247.1 mouse_genomes_project 4 18669703 18683753 + Pnisr protein_coding processed_transcript MGP_CASTEiJ_T0064822.1 MGP_CASTEiJ_G0027247.1 mouse_genomes_project 4 18675689 18680833 + Pnisr protein_coding processed_transcript MGP_CASTEiJ_T0064823.1 MGP_CASTEiJ_G0027247.1 mouse_genomes_project 4 18680356 18683673 + Pnisr protein_coding processed_transcript MGP_CASTEiJ_T0064824.1 MGP_CASTEiJ_G0027247.1 mouse_genomes_project 4 18680629 18682516 + Pnisr protein_coding processed_transcript MGP_CASTEiJ_T0064825.1 MGP_CASTEiJ_G0027247.1 mouse_genomes_project 4 18693903 18696740 + Pnisr protein_coding processed_transcript MGP_CASTEiJ_T0064826.1 MGP_CASTEiJ_G0027247.1 mouse_genomes_project 4 18697079 18698134 + Pnisr protein_coding processed_transcript MGP_CASTEiJ_T0068348.1 MGP_CASTEiJ_G0027999.1 mouse_genomes_project 4 130869391 130942261 - MGP_CASTEiJ_P0068348 protein_coding protein_coding MGP_CASTEiJ_T0068349.1 MGP_CASTEiJ_G0027999.1 mouse_genomes_project 4 130869398 130942218 - MGP_CASTEiJ_P0068349 protein_coding protein_coding MGP_CASTEiJ_T0068350.1 MGP_CASTEiJ_G0027999.1 mouse_genomes_project 4 130871635 130942202 - MGP_CASTEiJ_P0068350 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068351.1 MGP_CASTEiJ_G0027999.1 mouse_genomes_project 4 130871635 130942202 - MGP_CASTEiJ_P0068351 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068352.1 MGP_CASTEiJ_G0027999.1 mouse_genomes_project 4 130871786 130917435 - MGP_CASTEiJ_P0068352 protein_coding protein_coding MGP_CASTEiJ_T0068353.1 MGP_CASTEiJ_G0027999.1 mouse_genomes_project 4 130874216 130885405 - protein_coding processed_transcript MGP_CASTEiJ_T0068354.1 MGP_CASTEiJ_G0027999.1 mouse_genomes_project 4 130885824 130942213 - MGP_CASTEiJ_P0068354 protein_coding protein_coding MGP_CASTEiJ_T0068355.1 MGP_CASTEiJ_G0027999.1 mouse_genomes_project 4 130894156 130917423 - MGP_CASTEiJ_P0068355 protein_coding protein_coding MGP_CASTEiJ_T0066821.1 MGP_CASTEiJ_G0027679.1 mouse_genomes_project 4 105974888 105994968 - MGP_CASTEiJ_P0066821 Podn protein_coding protein_coding MGP_CASTEiJ_T0066822.1 MGP_CASTEiJ_G0027679.1 mouse_genomes_project 4 105974890 105984450 - MGP_CASTEiJ_P0066822 Podn protein_coding protein_coding MGP_CASTEiJ_T0066823.1 MGP_CASTEiJ_G0027679.1 mouse_genomes_project 4 105974894 106070821 - MGP_CASTEiJ_P0066823 Podn protein_coding protein_coding MGP_CASTEiJ_T0066824.1 MGP_CASTEiJ_G0027679.1 mouse_genomes_project 4 105974948 105994831 - MGP_CASTEiJ_P0066824 Podn protein_coding protein_coding MGP_CASTEiJ_T0066825.1 MGP_CASTEiJ_G0027679.1 mouse_genomes_project 4 105974951 105994832 - Podn protein_coding processed_transcript MGP_CASTEiJ_T0066826.1 MGP_CASTEiJ_G0027679.1 mouse_genomes_project 4 105977828 105981666 - MGP_CASTEiJ_P0066826 Podn protein_coding protein_coding MGP_CASTEiJ_T0066827.1 MGP_CASTEiJ_G0027679.1 mouse_genomes_project 4 105989885 105993864 - Podn protein_coding processed_transcript MGP_CASTEiJ_T0066828.1 MGP_CASTEiJ_G0027679.1 mouse_genomes_project 4 105990057 105995223 - Podn protein_coding processed_transcript MGP_CASTEiJ_T0069285.1 MGP_CASTEiJ_G0028221.1 mouse_genomes_project 4 146923577 146945552 - MGP_CASTEiJ_P0069285 Zfp933 protein_coding protein_coding MGP_CASTEiJ_T0069286.1 MGP_CASTEiJ_G0028221.1 mouse_genomes_project 4 146927154 146945552 - MGP_CASTEiJ_P0069286 Zfp933 protein_coding protein_coding MGP_CASTEiJ_T0013944.1 MGP_CASTEiJ_G0012107.1 mouse_genomes_project 4 4721015 4721471 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007645.1 MGP_CASTEiJ_G0006267.1 mouse_genomes_project 4 43488025 43490509 + lincRNA lincRNA MGP_CASTEiJ_T0066633.1 MGP_CASTEiJ_G0027645.1 mouse_genomes_project 4 102718972 102823653 + MGP_CASTEiJ_P0066633 1700024P16Rik protein_coding protein_coding MGP_CASTEiJ_T0066634.1 MGP_CASTEiJ_G0027645.1 mouse_genomes_project 4 102719040 102823653 + MGP_CASTEiJ_P0066634 1700024P16Rik protein_coding protein_coding MGP_CASTEiJ_T0014276.1 MGP_CASTEiJ_G0012439.1 mouse_genomes_project 4 121600705 121601114 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065271.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41060698 41107646 + MGP_CASTEiJ_P0065271 Rusc2 protein_coding protein_coding MGP_CASTEiJ_T0065272.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41060776 41094945 + MGP_CASTEiJ_P0065272 Rusc2 protein_coding protein_coding MGP_CASTEiJ_T0065273.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41060789 41096339 + Rusc2 protein_coding processed_transcript MGP_CASTEiJ_T0065274.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41062165 41094989 + MGP_CASTEiJ_P0065274 Rusc2 protein_coding protein_coding MGP_CASTEiJ_T0065275.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41062226 41094904 + MGP_CASTEiJ_P0065275 Rusc2 protein_coding protein_coding MGP_CASTEiJ_T0065276.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41063000 41102475 + Rusc2 protein_coding processed_transcript MGP_CASTEiJ_T0065277.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41063053 41095042 + MGP_CASTEiJ_P0065277 Rusc2 protein_coding protein_coding MGP_CASTEiJ_T0065278.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41079565 41107631 + Rusc2 protein_coding retained_intron MGP_CASTEiJ_T0065279.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41079580 41094888 + MGP_CASTEiJ_P0065279 Rusc2 protein_coding protein_coding MGP_CASTEiJ_T0065280.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41084819 41107646 + MGP_CASTEiJ_P0065280 Rusc2 protein_coding protein_coding MGP_CASTEiJ_T0065281.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41084886 41103010 + Rusc2 protein_coding processed_transcript MGP_CASTEiJ_T0065282.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41084941 41095328 + MGP_CASTEiJ_P0065282 Rusc2 protein_coding protein_coding MGP_CASTEiJ_T0065283.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41094844 41107194 + MGP_CASTEiJ_P0065283 Rusc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065284.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41094844 41107646 + MGP_CASTEiJ_P0065284 Rusc2 protein_coding protein_coding MGP_CASTEiJ_T0065285.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41095350 41107293 + MGP_CASTEiJ_P0065285 Rusc2 protein_coding protein_coding MGP_CASTEiJ_T0065286.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41096586 41106910 + Rusc2 protein_coding processed_transcript MGP_CASTEiJ_T0065287.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41103046 41104924 + Rusc2 protein_coding retained_intron MGP_CASTEiJ_T0065288.1 MGP_CASTEiJ_G0027341.1 mouse_genomes_project 4 41104145 41104562 + Rusc2 protein_coding retained_intron MGP_CASTEiJ_T0004331.1 MGP_CASTEiJ_G0003780.1 mouse_genomes_project 4 51773350 51775061 - 1700060J05Rik antisense antisense MGP_CASTEiJ_T0066610.1 MGP_CASTEiJ_G0027639.1 mouse_genomes_project 4 101002205 101058589 - MGP_CASTEiJ_P0066610 4921539E11Rik protein_coding protein_coding MGP_CASTEiJ_T0066611.1 MGP_CASTEiJ_G0027639.1 mouse_genomes_project 4 101002205 101058589 - MGP_CASTEiJ_P0066611 4921539E11Rik protein_coding protein_coding MGP_CASTEiJ_T0066612.1 MGP_CASTEiJ_G0027639.1 mouse_genomes_project 4 101007628 101058589 - MGP_CASTEiJ_P0066612 4921539E11Rik protein_coding protein_coding MGP_CASTEiJ_T0069265.1 MGP_CASTEiJ_G0028216.1 mouse_genomes_project 4 144362578 144371919 - MGP_CASTEiJ_P0069265 Gm438 protein_coding protein_coding MGP_CASTEiJ_T0098601.1 MGP_CASTEiJ_G0035532.1 mouse_genomes_project 4 79189717 79189828 + n-R5s187 rRNA rRNA MGP_CASTEiJ_T0066649.1 MGP_CASTEiJ_G0027652.1 mouse_genomes_project 4 104423880 104453897 + MGP_CASTEiJ_P0066649 Dhcr24 protein_coding protein_coding MGP_CASTEiJ_T0066650.1 MGP_CASTEiJ_G0027652.1 mouse_genomes_project 4 104423977 104463566 + MGP_CASTEiJ_P0066650 Dhcr24 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014320.1 MGP_CASTEiJ_G0012483.1 mouse_genomes_project 4 140754688 140754893 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068756.1 MGP_CASTEiJ_G0028085.1 mouse_genomes_project 4 134834989 134839414 - MGP_CASTEiJ_P0068756 Lypla2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068757.1 MGP_CASTEiJ_G0028085.1 mouse_genomes_project 4 134835463 134837230 - Lypla2 protein_coding retained_intron MGP_CASTEiJ_T0068758.1 MGP_CASTEiJ_G0028085.1 mouse_genomes_project 4 134835526 134839353 - Lypla2 protein_coding retained_intron MGP_CASTEiJ_T0068759.1 MGP_CASTEiJ_G0028085.1 mouse_genomes_project 4 134837409 134839368 - Lypla2 protein_coding retained_intron MGP_CASTEiJ_T0069993.1 MGP_CASTEiJ_G0028341.1 mouse_genomes_project 4 155578931 155583317 - MGP_CASTEiJ_P0069993 Tmem88b protein_coding protein_coding MGP_CASTEiJ_T0068288.1 MGP_CASTEiJ_G0027988.1 mouse_genomes_project 4 130334323 130363539 + MGP_CASTEiJ_P0068288 Srsf4 protein_coding protein_coding MGP_CASTEiJ_T0068289.1 MGP_CASTEiJ_G0027988.1 mouse_genomes_project 4 130334522 130352854 + MGP_CASTEiJ_P0068289 Srsf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068290.1 MGP_CASTEiJ_G0027988.1 mouse_genomes_project 4 130345009 130359653 + MGP_CASTEiJ_P0068290 Srsf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068291.1 MGP_CASTEiJ_G0027988.1 mouse_genomes_project 4 130345653 130362907 + MGP_CASTEiJ_P0068291 Srsf4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068292.1 MGP_CASTEiJ_G0027988.1 mouse_genomes_project 4 130345922 130363539 + Srsf4 protein_coding retained_intron MGP_CASTEiJ_T0068293.1 MGP_CASTEiJ_G0027988.1 mouse_genomes_project 4 130346132 130363540 + MGP_CASTEiJ_P0068293 Srsf4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014060.1 MGP_CASTEiJ_G0012223.1 mouse_genomes_project 4 43162044 43162341 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070077.1 MGP_CASTEiJ_G0028356.1 mouse_genomes_project 4 155784240 155800988 + MGP_CASTEiJ_P0070077 Sdf4 protein_coding protein_coding MGP_CASTEiJ_T0070078.1 MGP_CASTEiJ_G0028356.1 mouse_genomes_project 4 155784284 155805237 + MGP_CASTEiJ_P0070078 Sdf4 protein_coding protein_coding MGP_CASTEiJ_T0070079.1 MGP_CASTEiJ_G0028356.1 mouse_genomes_project 4 155784543 155793628 + MGP_CASTEiJ_P0070079 Sdf4 protein_coding protein_coding MGP_CASTEiJ_T0070080.1 MGP_CASTEiJ_G0028356.1 mouse_genomes_project 4 155784750 155801096 + MGP_CASTEiJ_P0070080 Sdf4 protein_coding protein_coding MGP_CASTEiJ_T0070081.1 MGP_CASTEiJ_G0028356.1 mouse_genomes_project 4 155784805 155800992 + MGP_CASTEiJ_P0070081 Sdf4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070082.1 MGP_CASTEiJ_G0028356.1 mouse_genomes_project 4 155790917 155792426 + Sdf4 protein_coding retained_intron MGP_CASTEiJ_T0070083.1 MGP_CASTEiJ_G0028356.1 mouse_genomes_project 4 155799287 155800635 + Sdf4 protein_coding retained_intron MGP_CASTEiJ_T0001367.1 MGP_CASTEiJ_G0001297.1 mouse_genomes_project 4 122308194 122309499 - TEC TEC MGP_CASTEiJ_T0010328.1 MGP_CASTEiJ_G0008516.1 mouse_genomes_project 4 130458398 130458470 - Gm27445 miRNA miRNA MGP_CASTEiJ_T0064524.1 MGP_CASTEiJ_G0027178.1 mouse_genomes_project 4 439145 440600 - MGP_CASTEiJ_P0064524 Mos protein_coding protein_coding MGP_CASTEiJ_T0069260.1 MGP_CASTEiJ_G0028211.1 mouse_genomes_project 4 144124525 144133313 + MGP_CASTEiJ_P0069260 9430007A20Rik protein_coding protein_coding MGP_CASTEiJ_T0065031.1 MGP_CASTEiJ_G0027293.1 mouse_genomes_project 4 37020891 37022373 + MGP_CASTEiJ_P0065031 1700009N14Rik protein_coding protein_coding MGP_CASTEiJ_T0010279.1 MGP_CASTEiJ_G0008467.1 mouse_genomes_project 4 7416005 7417553 - miRNA miRNA MGP_CASTEiJ_T0065577.1 MGP_CASTEiJ_G0027396.1 mouse_genomes_project 4 44271882 44296247 - MGP_CASTEiJ_P0065577 Hemgn protein_coding protein_coding MGP_CASTEiJ_T0065578.1 MGP_CASTEiJ_G0027396.1 mouse_genomes_project 4 44271882 44282669 - MGP_CASTEiJ_P0065578 Hemgn protein_coding protein_coding MGP_CASTEiJ_T0065579.1 MGP_CASTEiJ_G0027396.1 mouse_genomes_project 4 44272425 44282705 - MGP_CASTEiJ_P0065579 Hemgn protein_coding unknown_likely_coding MGP_CASTEiJ_T0004314.1 MGP_CASTEiJ_G0003766.1 mouse_genomes_project 4 39300947 39301840 + Gm12405 antisense antisense MGP_CASTEiJ_T0067211.1 MGP_CASTEiJ_G0027760.1 mouse_genomes_project 4 114276732 114291834 - MGP_CASTEiJ_P0067211 Akr1a1 protein_coding protein_coding MGP_CASTEiJ_T0067212.1 MGP_CASTEiJ_G0027760.1 mouse_genomes_project 4 114276733 114278229 - Akr1a1 protein_coding processed_transcript MGP_CASTEiJ_T0067213.1 MGP_CASTEiJ_G0027760.1 mouse_genomes_project 4 114276733 114291550 - Akr1a1 protein_coding processed_transcript MGP_CASTEiJ_T0067214.1 MGP_CASTEiJ_G0027760.1 mouse_genomes_project 4 114279309 114289625 - MGP_CASTEiJ_P0067214 Akr1a1 protein_coding protein_coding MGP_CASTEiJ_T0068638.1 MGP_CASTEiJ_G0028060.1 mouse_genomes_project 4 133267379 133281724 - MGP_CASTEiJ_P0068638 Sepn1 protein_coding protein_coding MGP_CASTEiJ_T0068639.1 MGP_CASTEiJ_G0028060.1 mouse_genomes_project 4 133269069 133270512 - Sepn1 protein_coding processed_transcript MGP_CASTEiJ_T0014326.1 MGP_CASTEiJ_G0012489.1 mouse_genomes_project 4 144148472 144151536 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099789.1 MGP_CASTEiJ_G0036702.1 mouse_genomes_project 4 47333197 47333303 + Gm22685 snRNA snRNA MGP_CASTEiJ_T0064953.1 MGP_CASTEiJ_G0027275.1 mouse_genomes_project 4 30503584 30506672 - MGP_CASTEiJ_P0064953 Pnrc1 protein_coding protein_coding MGP_CASTEiJ_T0064954.1 MGP_CASTEiJ_G0027275.1 mouse_genomes_project 4 30504165 30505737 - Pnrc1 protein_coding processed_transcript MGP_CASTEiJ_T0064955.1 MGP_CASTEiJ_G0027275.1 mouse_genomes_project 4 30504173 30548885 - Pnrc1 protein_coding processed_transcript MGP_CASTEiJ_T0013984.1 MGP_CASTEiJ_G0012147.1 mouse_genomes_project 4 18473552 18473817 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010305.1 MGP_CASTEiJ_G0008493.1 mouse_genomes_project 4 88959492 88959572 - Mir6402 miRNA miRNA MGP_CASTEiJ_T0069804.1 MGP_CASTEiJ_G0028310.1 mouse_genomes_project 4 153972224 153996291 - Arhgef16 protein_coding retained_intron MGP_CASTEiJ_T0069805.1 MGP_CASTEiJ_G0028310.1 mouse_genomes_project 4 153972224 153976369 - Arhgef16 protein_coding retained_intron MGP_CASTEiJ_T0069806.1 MGP_CASTEiJ_G0028310.1 mouse_genomes_project 4 153972224 153996453 - MGP_CASTEiJ_P0069806 Arhgef16 protein_coding protein_coding MGP_CASTEiJ_T0069807.1 MGP_CASTEiJ_G0028310.1 mouse_genomes_project 4 153972514 153998054 - MGP_CASTEiJ_P0069807 Arhgef16 protein_coding protein_coding MGP_CASTEiJ_T0069808.1 MGP_CASTEiJ_G0028310.1 mouse_genomes_project 4 153975887 153980956 - Arhgef16 protein_coding processed_transcript MGP_CASTEiJ_T0069809.1 MGP_CASTEiJ_G0028310.1 mouse_genomes_project 4 153980907 153996291 - MGP_CASTEiJ_P0069809 Arhgef16 protein_coding protein_coding MGP_CASTEiJ_T0069810.1 MGP_CASTEiJ_G0028310.1 mouse_genomes_project 4 153985031 153998067 - MGP_CASTEiJ_P0069810 Arhgef16 protein_coding protein_coding MGP_CASTEiJ_T0101023.1 MGP_CASTEiJ_G0037936.1 mouse_genomes_project 4 18160850 18160935 + Gm25977 snoRNA snoRNA MGP_CASTEiJ_T0067150.1 MGP_CASTEiJ_G0027749.1 mouse_genomes_project 4 113734513 113749526 + Pomgnt1 protein_coding processed_transcript MGP_CASTEiJ_T0067152.1 MGP_CASTEiJ_G0027749.1 mouse_genomes_project 4 113747903 113773531 + MGP_CASTEiJ_P0067152 Pomgnt1 protein_coding protein_coding MGP_CASTEiJ_T0067153.1 MGP_CASTEiJ_G0027749.1 mouse_genomes_project 4 113747918 113773532 + Pomgnt1 protein_coding retained_intron MGP_CASTEiJ_T0067155.1 MGP_CASTEiJ_G0027749.1 mouse_genomes_project 4 113748421 113773527 + MGP_CASTEiJ_P0067155 Pomgnt1 protein_coding protein_coding MGP_CASTEiJ_T0067156.1 MGP_CASTEiJ_G0027749.1 mouse_genomes_project 4 113764185 113773527 + MGP_CASTEiJ_P0067156 Pomgnt1 protein_coding protein_coding MGP_CASTEiJ_T0067157.1 MGP_CASTEiJ_G0027749.1 mouse_genomes_project 4 113764192 113773527 + MGP_CASTEiJ_P0067157 Pomgnt1 protein_coding protein_coding MGP_CASTEiJ_T0067158.1 MGP_CASTEiJ_G0027749.1 mouse_genomes_project 4 113765098 113773120 + MGP_CASTEiJ_P0067158 Pomgnt1 protein_coding protein_coding MGP_CASTEiJ_T0067159.1 MGP_CASTEiJ_G0027749.1 mouse_genomes_project 4 113768270 113769468 + Pomgnt1 protein_coding processed_transcript MGP_CASTEiJ_T0067160.1 MGP_CASTEiJ_G0027749.1 mouse_genomes_project 4 113768994 113772677 + Pomgnt1 protein_coding retained_intron MGP_CASTEiJ_T0067161.1 MGP_CASTEiJ_G0027749.1 mouse_genomes_project 4 113769612 113770329 + Pomgnt1 protein_coding retained_intron MGP_CASTEiJ_T0067162.1 MGP_CASTEiJ_G0027749.1 mouse_genomes_project 4 113769624 113772741 + Pomgnt1 protein_coding processed_transcript MGP_CASTEiJ_T0067163.1 MGP_CASTEiJ_G0027749.1 mouse_genomes_project 4 113771066 113772708 + Pomgnt1 protein_coding retained_intron MGP_CASTEiJ_T0069136.1 MGP_CASTEiJ_G0028172.1 mouse_genomes_project 4 140691599 140723999 + MGP_CASTEiJ_P0069136 Epha2 protein_coding protein_coding MGP_CASTEiJ_T0069137.1 MGP_CASTEiJ_G0028172.1 mouse_genomes_project 4 140692766 140701631 + Epha2 protein_coding processed_transcript MGP_CASTEiJ_T0069138.1 MGP_CASTEiJ_G0028172.1 mouse_genomes_project 4 140701790 140703871 + Epha2 protein_coding processed_transcript MGP_CASTEiJ_T0069139.1 MGP_CASTEiJ_G0028172.1 mouse_genomes_project 4 140709892 140715760 + Epha2 protein_coding processed_transcript MGP_CASTEiJ_T0007679.1 MGP_CASTEiJ_G0006294.1 mouse_genomes_project 4 65001496 65114070 + lincRNA lincRNA MGP_CASTEiJ_T0065606.1 MGP_CASTEiJ_G0027404.1 mouse_genomes_project 4 45023890 45057268 + MGP_CASTEiJ_P0065606 Galnt12 protein_coding protein_coding MGP_CASTEiJ_T0065607.1 MGP_CASTEiJ_G0027404.1 mouse_genomes_project 4 45023904 45057241 + MGP_CASTEiJ_P0065607 Galnt12 protein_coding protein_coding MGP_CASTEiJ_T0101050.1 MGP_CASTEiJ_G0037963.1 mouse_genomes_project 4 59806264 59806398 + Gm25391 snoRNA snoRNA MGP_CASTEiJ_T0014218.1 MGP_CASTEiJ_G0012381.1 mouse_genomes_project 4 104658221 104658435 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066024.1 MGP_CASTEiJ_G0027512.1 mouse_genomes_project 4 62362028 62586272 - MGP_CASTEiJ_P0066024 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0007735.1 MGP_CASTEiJ_G0006339.1 mouse_genomes_project 4 112344079 112344724 - Gm28864 lincRNA lincRNA MGP_CASTEiJ_T0067488.1 MGP_CASTEiJ_G0027819.1 mouse_genomes_project 4 117045887 117052456 + MGP_CASTEiJ_P0067488 Svbp protein_coding protein_coding MGP_CASTEiJ_T0067489.1 MGP_CASTEiJ_G0027819.1 mouse_genomes_project 4 117045988 117052456 + MGP_CASTEiJ_P0067489 Svbp protein_coding protein_coding MGP_CASTEiJ_T0067490.1 MGP_CASTEiJ_G0027819.1 mouse_genomes_project 4 117046077 117052456 + MGP_CASTEiJ_P0067490 Svbp protein_coding protein_coding MGP_CASTEiJ_T0004396.1 MGP_CASTEiJ_G0003829.1 mouse_genomes_project 4 121638405 121641251 + Gm12925 antisense antisense MGP_CASTEiJ_T0004397.1 MGP_CASTEiJ_G0003829.1 mouse_genomes_project 4 121639978 121643733 + Gm12925 antisense antisense MGP_CASTEiJ_T0004398.1 MGP_CASTEiJ_G0003829.1 mouse_genomes_project 4 121640140 121643740 + Gm12925 antisense antisense MGP_CASTEiJ_T0007636.1 MGP_CASTEiJ_G0006258.1 mouse_genomes_project 4 34724094 34812175 + Gm12374 lincRNA lincRNA MGP_CASTEiJ_T0004367.1 MGP_CASTEiJ_G0003806.1 mouse_genomes_project 4 105039526 105049183 + Gm12802 antisense antisense MGP_CASTEiJ_T0065120.1 MGP_CASTEiJ_G0027315.1 mouse_genomes_project 4 39113669 39130862 + MGP_CASTEiJ_P0065120 Nudt2 protein_coding protein_coding MGP_CASTEiJ_T0007744.1 MGP_CASTEiJ_G0006348.1 mouse_genomes_project 4 121880677 121886906 - Gm26606 lincRNA lincRNA MGP_CASTEiJ_T0067459.1 MGP_CASTEiJ_G0027806.1 mouse_genomes_project 4 116463741 116464716 - MGP_CASTEiJ_P0067459 Olfr1342 protein_coding protein_coding MGP_CASTEiJ_T0069481.1 MGP_CASTEiJ_G0028259.1 mouse_genomes_project 4 148941501 148995500 - MGP_CASTEiJ_P0069481 Pik3cd protein_coding protein_coding MGP_CASTEiJ_T0069482.1 MGP_CASTEiJ_G0028259.1 mouse_genomes_project 4 148941501 148995510 - MGP_CASTEiJ_P0069482 Pik3cd protein_coding protein_coding MGP_CASTEiJ_T0069483.1 MGP_CASTEiJ_G0028259.1 mouse_genomes_project 4 148941503 148998395 - MGP_CASTEiJ_P0069483 Pik3cd protein_coding protein_coding MGP_CASTEiJ_T0069484.1 MGP_CASTEiJ_G0028259.1 mouse_genomes_project 4 148941503 148970290 - MGP_CASTEiJ_P0069484 Pik3cd protein_coding protein_coding MGP_CASTEiJ_T0069485.1 MGP_CASTEiJ_G0028259.1 mouse_genomes_project 4 148941504 148972158 - MGP_CASTEiJ_P0069485 Pik3cd protein_coding protein_coding MGP_CASTEiJ_T0069486.1 MGP_CASTEiJ_G0028259.1 mouse_genomes_project 4 148942154 148995407 - MGP_CASTEiJ_P0069486 Pik3cd protein_coding protein_coding MGP_CASTEiJ_T0069487.1 MGP_CASTEiJ_G0028259.1 mouse_genomes_project 4 148942977 148957021 - MGP_CASTEiJ_P0069487 Pik3cd protein_coding protein_coding MGP_CASTEiJ_T0069488.1 MGP_CASTEiJ_G0028259.1 mouse_genomes_project 4 148953526 148971282 - MGP_CASTEiJ_P0069488 Pik3cd protein_coding protein_coding MGP_CASTEiJ_T0069489.1 MGP_CASTEiJ_G0028259.1 mouse_genomes_project 4 148953605 148971721 - MGP_CASTEiJ_P0069489 Pik3cd protein_coding protein_coding MGP_CASTEiJ_T0069490.1 MGP_CASTEiJ_G0028259.1 mouse_genomes_project 4 148953767 148995406 - MGP_CASTEiJ_P0069490 Pik3cd protein_coding protein_coding MGP_CASTEiJ_T0069491.1 MGP_CASTEiJ_G0028259.1 mouse_genomes_project 4 148953932 148995354 - MGP_CASTEiJ_P0069491 Pik3cd protein_coding protein_coding MGP_CASTEiJ_T0069492.1 MGP_CASTEiJ_G0028259.1 mouse_genomes_project 4 148956889 148999370 - MGP_CASTEiJ_P0069492 Pik3cd protein_coding protein_coding MGP_CASTEiJ_T0069493.1 MGP_CASTEiJ_G0028259.1 mouse_genomes_project 4 148969541 148972207 - Pik3cd protein_coding processed_transcript MGP_CASTEiJ_T0069494.1 MGP_CASTEiJ_G0028259.1 mouse_genomes_project 4 148969860 148998395 - Pik3cd protein_coding processed_transcript MGP_CASTEiJ_T0004409.1 MGP_CASTEiJ_G0003838.1 mouse_genomes_project 4 126599605 126601607 + Hmgb4os antisense antisense MGP_CASTEiJ_T0004486.1 MGP_CASTEiJ_G0003898.1 mouse_genomes_project 4 155524586 155526764 - 1500002C15Rik antisense antisense MGP_CASTEiJ_T0004487.1 MGP_CASTEiJ_G0003898.1 mouse_genomes_project 4 155524589 155526664 - 1500002C15Rik antisense antisense MGP_CASTEiJ_T0007722.1 MGP_CASTEiJ_G0006331.1 mouse_genomes_project 4 104145292 104146279 + Gm12730 lincRNA lincRNA MGP_CASTEiJ_T0069118.1 MGP_CASTEiJ_G0028168.1 mouse_genomes_project 4 140484993 140513969 - Szrd1 protein_coding processed_transcript MGP_CASTEiJ_T0069119.1 MGP_CASTEiJ_G0028168.1 mouse_genomes_project 4 140484993 140513969 - Szrd1 protein_coding processed_transcript MGP_CASTEiJ_T0069120.1 MGP_CASTEiJ_G0028168.1 mouse_genomes_project 4 140484993 140513960 - MGP_CASTEiJ_P0069120 Szrd1 protein_coding protein_coding MGP_CASTEiJ_T0069121.1 MGP_CASTEiJ_G0028168.1 mouse_genomes_project 4 140484993 140513921 - MGP_CASTEiJ_P0069121 Szrd1 protein_coding protein_coding MGP_CASTEiJ_T0069122.1 MGP_CASTEiJ_G0028168.1 mouse_genomes_project 4 140488559 140513934 - Szrd1 protein_coding processed_transcript MGP_CASTEiJ_T0066476.1 MGP_CASTEiJ_G0027616.1 mouse_genomes_project 4 97439126 97454621 + Alg6 protein_coding retained_intron MGP_CASTEiJ_T0066477.1 MGP_CASTEiJ_G0027616.1 mouse_genomes_project 4 97439127 97481770 + Alg6 protein_coding retained_intron MGP_CASTEiJ_T0066478.1 MGP_CASTEiJ_G0027616.1 mouse_genomes_project 4 97439127 97482930 + MGP_CASTEiJ_P0066478 Alg6 protein_coding protein_coding MGP_CASTEiJ_T0066479.1 MGP_CASTEiJ_G0027616.1 mouse_genomes_project 4 97439138 97464173 + Alg6 protein_coding processed_transcript MGP_CASTEiJ_T0066480.1 MGP_CASTEiJ_G0027616.1 mouse_genomes_project 4 97439138 97472584 + MGP_CASTEiJ_P0066480 Alg6 protein_coding protein_coding MGP_CASTEiJ_T0066481.1 MGP_CASTEiJ_G0027616.1 mouse_genomes_project 4 97439138 97472393 + MGP_CASTEiJ_P0066481 Alg6 protein_coding protein_coding MGP_CASTEiJ_T0066482.1 MGP_CASTEiJ_G0027616.1 mouse_genomes_project 4 97443597 97457169 + Alg6 protein_coding retained_intron MGP_CASTEiJ_T0099854.1 MGP_CASTEiJ_G0036767.1 mouse_genomes_project 4 155510677 155510779 - Gm22573 snRNA snRNA MGP_CASTEiJ_T0014223.1 MGP_CASTEiJ_G0012386.1 mouse_genomes_project 4 106306698 106307494 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068180.1 MGP_CASTEiJ_G0027969.1 mouse_genomes_project 4 128470361 128513025 + MGP_CASTEiJ_P0068180 Adgrb2 protein_coding protein_coding MGP_CASTEiJ_T0068181.1 MGP_CASTEiJ_G0027969.1 mouse_genomes_project 4 128470465 128513025 + MGP_CASTEiJ_P0068181 Adgrb2 protein_coding protein_coding MGP_CASTEiJ_T0068182.1 MGP_CASTEiJ_G0027969.1 mouse_genomes_project 4 128473324 128512788 + MGP_CASTEiJ_P0068182 Adgrb2 protein_coding protein_coding MGP_CASTEiJ_T0068183.1 MGP_CASTEiJ_G0027969.1 mouse_genomes_project 4 128473324 128512788 + MGP_CASTEiJ_P0068183 Adgrb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068184.1 MGP_CASTEiJ_G0027969.1 mouse_genomes_project 4 128477259 128513025 + MGP_CASTEiJ_P0068184 Adgrb2 protein_coding protein_coding MGP_CASTEiJ_T0068185.1 MGP_CASTEiJ_G0027969.1 mouse_genomes_project 4 128477260 128512731 + MGP_CASTEiJ_P0068185 Adgrb2 protein_coding protein_coding MGP_CASTEiJ_T0068186.1 MGP_CASTEiJ_G0027969.1 mouse_genomes_project 4 128477260 128512731 + MGP_CASTEiJ_P0068186 Adgrb2 protein_coding protein_coding MGP_CASTEiJ_T0068187.1 MGP_CASTEiJ_G0027969.1 mouse_genomes_project 4 128477260 128512731 + MGP_CASTEiJ_P0068187 Adgrb2 protein_coding protein_coding MGP_CASTEiJ_T0068188.1 MGP_CASTEiJ_G0027969.1 mouse_genomes_project 4 128500247 128502237 + Adgrb2 protein_coding retained_intron MGP_CASTEiJ_T0068189.1 MGP_CASTEiJ_G0027969.1 mouse_genomes_project 4 128500440 128502917 + Adgrb2 protein_coding retained_intron MGP_CASTEiJ_T0068190.1 MGP_CASTEiJ_G0027969.1 mouse_genomes_project 4 128502571 128502948 + Adgrb2 protein_coding retained_intron MGP_CASTEiJ_T0068191.1 MGP_CASTEiJ_G0027969.1 mouse_genomes_project 4 128504040 128504968 + Adgrb2 protein_coding retained_intron MGP_CASTEiJ_T0068192.1 MGP_CASTEiJ_G0027969.1 mouse_genomes_project 4 128509168 128511956 + Adgrb2 protein_coding retained_intron MGP_CASTEiJ_T0068193.1 MGP_CASTEiJ_G0027969.1 mouse_genomes_project 4 128511507 128512823 + Adgrb2 protein_coding retained_intron MGP_CASTEiJ_T0068629.1 MGP_CASTEiJ_G0028058.1 mouse_genomes_project 4 133239138 133253139 + MGP_CASTEiJ_P0068629 Aunip protein_coding protein_coding MGP_CASTEiJ_T0068630.1 MGP_CASTEiJ_G0028058.1 mouse_genomes_project 4 133239224 133255053 + MGP_CASTEiJ_P0068630 Aunip protein_coding unknown_likely_coding MGP_CASTEiJ_T0014194.1 MGP_CASTEiJ_G0012357.1 mouse_genomes_project 4 95984654 95984992 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004292.1 MGP_CASTEiJ_G0003749.1 mouse_genomes_project 4 5852258 5855629 - Gm11816 antisense antisense MGP_CASTEiJ_T0004293.1 MGP_CASTEiJ_G0003749.1 mouse_genomes_project 4 5854121 5855573 - Gm11816 antisense antisense MGP_CASTEiJ_T0014290.1 MGP_CASTEiJ_G0012453.1 mouse_genomes_project 4 125563642 125564322 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065506.1 MGP_CASTEiJ_G0027381.1 mouse_genomes_project 4 43120213 43139345 + MGP_CASTEiJ_P0065506 Trmt10b protein_coding protein_coding MGP_CASTEiJ_T0065507.1 MGP_CASTEiJ_G0027381.1 mouse_genomes_project 4 43120241 43127457 + MGP_CASTEiJ_P0065507 Trmt10b protein_coding protein_coding MGP_CASTEiJ_T0065508.1 MGP_CASTEiJ_G0027381.1 mouse_genomes_project 4 43123481 43133270 + Trmt10b protein_coding processed_transcript MGP_CASTEiJ_T0065509.1 MGP_CASTEiJ_G0027381.1 mouse_genomes_project 4 43123501 43127454 + Trmt10b protein_coding processed_transcript MGP_CASTEiJ_T0065510.1 MGP_CASTEiJ_G0027381.1 mouse_genomes_project 4 43123501 43138377 + Trmt10b protein_coding processed_transcript MGP_CASTEiJ_T0065511.1 MGP_CASTEiJ_G0027381.1 mouse_genomes_project 4 43123501 43138377 + MGP_CASTEiJ_P0065511 Trmt10b protein_coding protein_coding MGP_CASTEiJ_T0065512.1 MGP_CASTEiJ_G0027381.1 mouse_genomes_project 4 43137334 43138283 + Trmt10b protein_coding processed_transcript MGP_CASTEiJ_T0014079.1 MGP_CASTEiJ_G0012242.1 mouse_genomes_project 4 50377975 50378595 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007687.1 MGP_CASTEiJ_G0006302.1 mouse_genomes_project 4 80677131 80690072 + Gm11184 lincRNA lincRNA MGP_CASTEiJ_T0101015.1 MGP_CASTEiJ_G0037928.1 mouse_genomes_project 4 425691 425828 - Gm24125 snoRNA snoRNA MGP_CASTEiJ_T0014278.1 MGP_CASTEiJ_G0012441.1 mouse_genomes_project 4 121884463 121885023 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004379.1 MGP_CASTEiJ_G0003813.1 mouse_genomes_project 4 112496614 112585011 - 9130410C08Rik antisense antisense MGP_CASTEiJ_T0014114.1 MGP_CASTEiJ_G0012277.1 mouse_genomes_project 4 63671796 63672271 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064552.1 MGP_CASTEiJ_G0027185.1 mouse_genomes_project 4 2197180 2343188 + Fam110b protein_coding processed_transcript MGP_CASTEiJ_T0064553.1 MGP_CASTEiJ_G0027185.1 mouse_genomes_project 4 2197201 2345905 + MGP_CASTEiJ_P0064553 Fam110b protein_coding protein_coding MGP_CASTEiJ_T0064554.1 MGP_CASTEiJ_G0027185.1 mouse_genomes_project 4 2197205 2284748 + Fam110b protein_coding retained_intron MGP_CASTEiJ_T0064555.1 MGP_CASTEiJ_G0027185.1 mouse_genomes_project 4 2197270 2343300 + Fam110b protein_coding processed_transcript MGP_CASTEiJ_T0064556.1 MGP_CASTEiJ_G0027185.1 mouse_genomes_project 4 2197315 2648701 + Fam110b protein_coding processed_transcript MGP_CASTEiJ_T0064557.1 MGP_CASTEiJ_G0027185.1 mouse_genomes_project 4 2275567 2345907 + MGP_CASTEiJ_P0064557 Fam110b protein_coding protein_coding MGP_CASTEiJ_T0064558.1 MGP_CASTEiJ_G0027185.1 mouse_genomes_project 4 2317956 2343651 + MGP_CASTEiJ_P0064558 Fam110b protein_coding protein_coding MGP_CASTEiJ_T0064559.1 MGP_CASTEiJ_G0027185.1 mouse_genomes_project 4 2317956 2344752 + MGP_CASTEiJ_P0064559 Fam110b protein_coding protein_coding MGP_CASTEiJ_T0064560.1 MGP_CASTEiJ_G0027185.1 mouse_genomes_project 4 2342889 2343337 + Fam110b protein_coding processed_transcript MGP_CASTEiJ_T0001365.1 MGP_CASTEiJ_G0001295.1 mouse_genomes_project 4 106640524 106642813 - TEC TEC MGP_CASTEiJ_T0068356.1 MGP_CASTEiJ_G0028000.1 mouse_genomes_project 4 130989870 130996833 - MGP_CASTEiJ_P0068356 Med18 protein_coding protein_coding MGP_CASTEiJ_T0068357.1 MGP_CASTEiJ_G0028000.1 mouse_genomes_project 4 130990996 130996243 - MGP_CASTEiJ_P0068357 Med18 protein_coding protein_coding MGP_CASTEiJ_T0065754.1 MGP_CASTEiJ_G0027446.1 mouse_genomes_project 4 55066265 55067704 - MGP_CASTEiJ_P0065754 Actl7b protein_coding protein_coding MGP_CASTEiJ_T0064597.1 MGP_CASTEiJ_G0027195.1 mouse_genomes_project 4 5835756 5850755 + Clvs1 protein_coding processed_transcript MGP_CASTEiJ_T0064598.1 MGP_CASTEiJ_G0027195.1 mouse_genomes_project 4 5835780 5925336 + Clvs1 protein_coding processed_transcript MGP_CASTEiJ_T0064599.1 MGP_CASTEiJ_G0027195.1 mouse_genomes_project 4 5835780 6032366 + MGP_CASTEiJ_P0064599 Clvs1 protein_coding protein_coding MGP_CASTEiJ_T0064600.1 MGP_CASTEiJ_G0027195.1 mouse_genomes_project 4 5835793 5850753 + Clvs1 protein_coding processed_transcript MGP_CASTEiJ_T0064601.1 MGP_CASTEiJ_G0027195.1 mouse_genomes_project 4 5835810 5849915 + Clvs1 protein_coding processed_transcript MGP_CASTEiJ_T0064602.1 MGP_CASTEiJ_G0027195.1 mouse_genomes_project 4 5837919 6032366 + MGP_CASTEiJ_P0064602 Clvs1 protein_coding protein_coding MGP_CASTEiJ_T0064603.1 MGP_CASTEiJ_G0027195.1 mouse_genomes_project 4 5880882 6010560 + Clvs1 protein_coding processed_transcript MGP_CASTEiJ_T0064604.1 MGP_CASTEiJ_G0027195.1 mouse_genomes_project 4 5907400 6010597 + Clvs1 protein_coding processed_transcript MGP_CASTEiJ_T0013936.1 MGP_CASTEiJ_G0012099.1 mouse_genomes_project 4 2156527 2157000 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014227.1 MGP_CASTEiJ_G0012390.1 mouse_genomes_project 4 106748345 106748901 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004329.1 MGP_CASTEiJ_G0003778.1 mouse_genomes_project 4 50563968 50577108 - Smc2os antisense antisense MGP_CASTEiJ_T0017292.1 MGP_CASTEiJ_G0014854.1 mouse_genomes_project 4 30260461 30265830 - 4933421O10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0069187.1 MGP_CASTEiJ_G0028182.1 mouse_genomes_project 4 141051884 141058186 - MGP_CASTEiJ_P0069187 Slc25a34 protein_coding protein_coding MGP_CASTEiJ_T0007763.1 MGP_CASTEiJ_G0006358.1 mouse_genomes_project 4 125823656 125852769 + A630031M04Rik lincRNA lincRNA MGP_CASTEiJ_T0067381.1 MGP_CASTEiJ_G0027789.1 mouse_genomes_project 4 115614405 115617779 - MGP_CASTEiJ_P0067381 Dph2 protein_coding protein_coding MGP_CASTEiJ_T0067382.1 MGP_CASTEiJ_G0027789.1 mouse_genomes_project 4 115614669 115617767 - Dph2 protein_coding retained_intron MGP_CASTEiJ_T0067383.1 MGP_CASTEiJ_G0027789.1 mouse_genomes_project 4 115614678 115617770 - MGP_CASTEiJ_P0067383 Dph2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067384.1 MGP_CASTEiJ_G0027789.1 mouse_genomes_project 4 115616835 115617733 - Dph2 protein_coding retained_intron MGP_CASTEiJ_T0004363.1 MGP_CASTEiJ_G0003802.1 mouse_genomes_project 4 100767678 100775506 - BB031773 antisense antisense MGP_CASTEiJ_T0010322.1 MGP_CASTEiJ_G0008510.1 mouse_genomes_project 4 122792369 122792478 + Mir697 miRNA miRNA MGP_CASTEiJ_T0067236.1 MGP_CASTEiJ_G0027765.1 mouse_genomes_project 4 114451102 114464231 - MGP_CASTEiJ_P0067236 Toe1 protein_coding protein_coding MGP_CASTEiJ_T0067237.1 MGP_CASTEiJ_G0027765.1 mouse_genomes_project 4 114460563 114464289 - MGP_CASTEiJ_P0067237 Toe1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067238.1 MGP_CASTEiJ_G0027765.1 mouse_genomes_project 4 114460563 114464289 - MGP_CASTEiJ_P0067238 Toe1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067239.1 MGP_CASTEiJ_G0027765.1 mouse_genomes_project 4 114460676 114464318 - MGP_CASTEiJ_P0067239 Toe1 protein_coding protein_coding MGP_CASTEiJ_T0067240.1 MGP_CASTEiJ_G0027765.1 mouse_genomes_project 4 114460686 114461867 - Toe1 protein_coding processed_transcript MGP_CASTEiJ_T0067241.1 MGP_CASTEiJ_G0027765.1 mouse_genomes_project 4 114461348 114462288 - Toe1 protein_coding retained_intron MGP_CASTEiJ_T0067242.1 MGP_CASTEiJ_G0027765.1 mouse_genomes_project 4 114461456 114463199 - MGP_CASTEiJ_P0067242 Toe1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067243.1 MGP_CASTEiJ_G0027765.1 mouse_genomes_project 4 114461950 114463276 - Toe1 protein_coding retained_intron MGP_CASTEiJ_T0067244.1 MGP_CASTEiJ_G0027765.1 mouse_genomes_project 4 114462393 114464289 - Toe1 protein_coding processed_transcript MGP_CASTEiJ_T0067245.1 MGP_CASTEiJ_G0027765.1 mouse_genomes_project 4 114462499 114464231 - Toe1 protein_coding retained_intron MGP_CASTEiJ_T0014102.1 MGP_CASTEiJ_G0012265.1 mouse_genomes_project 4 57027042 57027459 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007767.1 MGP_CASTEiJ_G0006362.1 mouse_genomes_project 4 127425550 127436838 - 1700086P04Rik lincRNA lincRNA MGP_CASTEiJ_T0007817.1 MGP_CASTEiJ_G0006396.1 mouse_genomes_project 4 139726880 139734254 + Gm13021 lincRNA lincRNA MGP_CASTEiJ_T0010347.1 MGP_CASTEiJ_G0008535.1 mouse_genomes_project 4 140024388 140024484 + Gm23045 miRNA miRNA MGP_CASTEiJ_T0014188.1 MGP_CASTEiJ_G0012351.1 mouse_genomes_project 4 93162935 93165059 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069522.1 MGP_CASTEiJ_G0028266.1 mouse_genomes_project 4 149477639 149501977 + MGP_CASTEiJ_P0069522 Slc2a7 protein_coding protein_coding MGP_CASTEiJ_T0069523.1 MGP_CASTEiJ_G0028266.1 mouse_genomes_project 4 149489525 149490398 + Slc2a7 protein_coding retained_intron MGP_CASTEiJ_T0101065.1 MGP_CASTEiJ_G0037978.1 mouse_genomes_project 4 91717780 91717909 + Gm23836 snoRNA snoRNA MGP_CASTEiJ_T0102313.1 MGP_CASTEiJ_G0039038.1 mouse_genomes_project 4 93786305 93786484 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010330.1 MGP_CASTEiJ_G0008518.1 mouse_genomes_project 4 130928704 130928800 + Gm25707 miRNA miRNA MGP_CASTEiJ_T0014256.1 MGP_CASTEiJ_G0012419.1 mouse_genomes_project 4 116290470 116291062 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067985.1 MGP_CASTEiJ_G0027935.1 mouse_genomes_project 4 127106208 127119901 + MGP_CASTEiJ_P0067985 A3galt2 protein_coding protein_coding MGP_CASTEiJ_T0067986.1 MGP_CASTEiJ_G0027935.1 mouse_genomes_project 4 127110090 127120611 + MGP_CASTEiJ_P0067986 A3galt2 protein_coding protein_coding MGP_CASTEiJ_T0070076.1 MGP_CASTEiJ_G0028355.1 mouse_genomes_project 4 155780847 155784007 - MGP_CASTEiJ_P0070076 B3galt6 protein_coding protein_coding MGP_CASTEiJ_T0007805.1 MGP_CASTEiJ_G0006385.1 mouse_genomes_project 4 136070223 136071108 - 1700037C06Rik lincRNA lincRNA MGP_CASTEiJ_T0068464.1 MGP_CASTEiJ_G0028023.1 mouse_genomes_project 4 132114445 132126446 + MGP_CASTEiJ_P0068464 Fam46b protein_coding unknown_likely_coding MGP_CASTEiJ_T0099848.1 MGP_CASTEiJ_G0036761.1 mouse_genomes_project 4 147716520 147716624 + Gm24002 snRNA snRNA MGP_CASTEiJ_T0010284.1 MGP_CASTEiJ_G0008472.1 mouse_genomes_project 4 27804390 27804499 - Gm22831 miRNA miRNA MGP_CASTEiJ_T0068596.1 MGP_CASTEiJ_G0028051.1 mouse_genomes_project 4 132985726 132997998 - MGP_CASTEiJ_P0068596 Pdik1l protein_coding protein_coding MGP_CASTEiJ_T0068597.1 MGP_CASTEiJ_G0028051.1 mouse_genomes_project 4 132985726 132998654 - MGP_CASTEiJ_P0068597 Pdik1l protein_coding protein_coding MGP_CASTEiJ_T0068598.1 MGP_CASTEiJ_G0028051.1 mouse_genomes_project 4 132985727 132998012 - MGP_CASTEiJ_P0068598 Pdik1l protein_coding protein_coding MGP_CASTEiJ_T0068599.1 MGP_CASTEiJ_G0028051.1 mouse_genomes_project 4 132989267 132997984 - MGP_CASTEiJ_P0068599 Pdik1l protein_coding protein_coding MGP_CASTEiJ_T0068600.1 MGP_CASTEiJ_G0028051.1 mouse_genomes_project 4 132990054 132998009 - MGP_CASTEiJ_P0068600 Pdik1l protein_coding protein_coding MGP_CASTEiJ_T0068601.1 MGP_CASTEiJ_G0028051.1 mouse_genomes_project 4 132994321 132997984 - Pdik1l protein_coding processed_transcript MGP_CASTEiJ_T0065767.1 MGP_CASTEiJ_G0027451.1 mouse_genomes_project 4 55138819 55198724 - MGP_CASTEiJ_P0065767 Ctnnal1 protein_coding protein_coding MGP_CASTEiJ_T0065768.1 MGP_CASTEiJ_G0027451.1 mouse_genomes_project 4 55140026 55142597 - Ctnnal1 protein_coding processed_transcript MGP_CASTEiJ_T0065769.1 MGP_CASTEiJ_G0027451.1 mouse_genomes_project 4 55145271 55145944 - Ctnnal1 protein_coding processed_transcript MGP_CASTEiJ_T0065770.1 MGP_CASTEiJ_G0027451.1 mouse_genomes_project 4 55152849 55169254 - Ctnnal1 protein_coding processed_transcript MGP_CASTEiJ_T0065771.1 MGP_CASTEiJ_G0027451.1 mouse_genomes_project 4 55154760 55198704 - Ctnnal1 protein_coding processed_transcript MGP_CASTEiJ_T0065772.1 MGP_CASTEiJ_G0027451.1 mouse_genomes_project 4 55155023 55158485 - Ctnnal1 protein_coding processed_transcript MGP_CASTEiJ_T0065773.1 MGP_CASTEiJ_G0027451.1 mouse_genomes_project 4 55158156 55168201 - Ctnnal1 protein_coding processed_transcript MGP_CASTEiJ_T0065774.1 MGP_CASTEiJ_G0027451.1 mouse_genomes_project 4 55170311 55198690 - MGP_CASTEiJ_P0065774 Ctnnal1 protein_coding protein_coding MGP_CASTEiJ_T0065775.1 MGP_CASTEiJ_G0027451.1 mouse_genomes_project 4 55177543 55178969 - Ctnnal1 protein_coding processed_transcript MGP_CASTEiJ_T0069976.1 MGP_CASTEiJ_G0028338.1 mouse_genomes_project 4 155526836 155532202 + MGP_CASTEiJ_P0069976 Tmem240 protein_coding protein_coding MGP_CASTEiJ_T0069977.1 MGP_CASTEiJ_G0028338.1 mouse_genomes_project 4 155526840 155532624 + Tmem240 protein_coding retained_intron MGP_CASTEiJ_T0069978.1 MGP_CASTEiJ_G0028338.1 mouse_genomes_project 4 155526910 155532624 + MGP_CASTEiJ_P0069978 Tmem240 protein_coding protein_coding MGP_CASTEiJ_T0066635.1 MGP_CASTEiJ_G0027646.1 mouse_genomes_project 4 102835553 102918346 - MGP_CASTEiJ_P0066635 Prkaa2 protein_coding protein_coding MGP_CASTEiJ_T0013983.1 MGP_CASTEiJ_G0012146.1 mouse_genomes_project 4 18434521 18435320 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007797.1 MGP_CASTEiJ_G0006380.1 mouse_genomes_project 4 131675486 131678670 + Gm26615 lincRNA lincRNA MGP_CASTEiJ_T0065121.1 MGP_CASTEiJ_G0027316.1 mouse_genomes_project 4 39146405 39153916 - MGP_CASTEiJ_P0065121 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065122.1 MGP_CASTEiJ_G0027316.1 mouse_genomes_project 4 39150301 39153476 - MGP_CASTEiJ_P0065122 protein_coding protein_coding MGP_CASTEiJ_T0014113.1 MGP_CASTEiJ_G0012276.1 mouse_genomes_project 4 63335377 63335715 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014307.1 MGP_CASTEiJ_G0012470.1 mouse_genomes_project 4 134211773 134212241 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067077.1 MGP_CASTEiJ_G0027734.1 mouse_genomes_project 4 113175220 113177958 + MGP_CASTEiJ_P0067077 protein_coding protein_coding MGP_CASTEiJ_T0067078.1 MGP_CASTEiJ_G0027734.1 mouse_genomes_project 4 113175255 113218870 + MGP_CASTEiJ_P0067078 protein_coding protein_coding MGP_CASTEiJ_T0067079.1 MGP_CASTEiJ_G0027734.1 mouse_genomes_project 4 113212279 113232162 + MGP_CASTEiJ_P0067079 protein_coding protein_coding MGP_CASTEiJ_T0014008.1 MGP_CASTEiJ_G0012171.1 mouse_genomes_project 4 25341262 25342258 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065391.1 MGP_CASTEiJ_G0027358.1 mouse_genomes_project 4 41360434 41372329 - MGP_CASTEiJ_P0065391 Fam221b protein_coding protein_coding MGP_CASTEiJ_T0065392.1 MGP_CASTEiJ_G0027358.1 mouse_genomes_project 4 41365545 41372333 - Fam221b protein_coding retained_intron MGP_CASTEiJ_T0067215.1 MGP_CASTEiJ_G0027761.1 mouse_genomes_project 4 114329582 114331879 + Prdx1 protein_coding retained_intron MGP_CASTEiJ_T0067216.1 MGP_CASTEiJ_G0027761.1 mouse_genomes_project 4 114329582 114337880 + MGP_CASTEiJ_P0067216 Prdx1 protein_coding protein_coding MGP_CASTEiJ_T0067217.1 MGP_CASTEiJ_G0027761.1 mouse_genomes_project 4 114329589 114345273 + MGP_CASTEiJ_P0067217 Prdx1 protein_coding protein_coding MGP_CASTEiJ_T0067218.1 MGP_CASTEiJ_G0027761.1 mouse_genomes_project 4 114329844 114337045 + MGP_CASTEiJ_P0067218 Prdx1 protein_coding protein_coding MGP_CASTEiJ_T0069206.1 MGP_CASTEiJ_G0028189.1 mouse_genomes_project 4 141245424 141249694 - Cela2a protein_coding retained_intron MGP_CASTEiJ_T0069207.1 MGP_CASTEiJ_G0028189.1 mouse_genomes_project 4 141245424 141256896 - MGP_CASTEiJ_P0069207 Cela2a protein_coding protein_coding MGP_CASTEiJ_T0069209.1 MGP_CASTEiJ_G0028189.1 mouse_genomes_project 4 141255701 141256737 - Cela2a protein_coding retained_intron MGP_CASTEiJ_T0066613.1 MGP_CASTEiJ_G0027640.1 mouse_genomes_project 4 101081704 101137069 + MGP_CASTEiJ_P0066613 Oma1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066614.1 MGP_CASTEiJ_G0027640.1 mouse_genomes_project 4 101092242 101098436 + Oma1 protein_coding processed_transcript MGP_CASTEiJ_T0066615.1 MGP_CASTEiJ_G0027640.1 mouse_genomes_project 4 101098454 101144166 + Oma1 protein_coding processed_transcript MGP_CASTEiJ_T0101029.1 MGP_CASTEiJ_G0037942.1 mouse_genomes_project 4 34770383 34770508 + Gm22732 snoRNA snoRNA MGP_CASTEiJ_T0066012.1 MGP_CASTEiJ_G0027507.1 mouse_genomes_project 4 60595386 60596406 - protein_coding translated_processed_pseudogene MGP_CASTEiJ_T0066013.1 MGP_CASTEiJ_G0027507.1 mouse_genomes_project 4 60595386 60595937 - MGP_CASTEiJ_P0066013 protein_coding protein_coding MGP_CASTEiJ_T0065934.1 MGP_CASTEiJ_G0027490.1 mouse_genomes_project 4 59345906 59349179 - MGP_CASTEiJ_P0065934 Hdhd3 protein_coding protein_coding MGP_CASTEiJ_T0065935.1 MGP_CASTEiJ_G0027490.1 mouse_genomes_project 4 59346841 59350366 - Hdhd3 protein_coding processed_transcript MGP_CASTEiJ_T0007625.1 MGP_CASTEiJ_G0006247.1 mouse_genomes_project 4 19807266 19817573 - 1700025O08Rik lincRNA lincRNA MGP_CASTEiJ_T0067567.1 MGP_CASTEiJ_G0027834.1 mouse_genomes_project 4 117607764 117759047 + MGP_CASTEiJ_P0067567 Hivep3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067568.1 MGP_CASTEiJ_G0027834.1 mouse_genomes_project 4 117607812 117759671 + Hivep3 protein_coding processed_transcript MGP_CASTEiJ_T0067569.1 MGP_CASTEiJ_G0027834.1 mouse_genomes_project 4 117607812 117699253 + Hivep3 protein_coding processed_transcript MGP_CASTEiJ_T0067570.1 MGP_CASTEiJ_G0027834.1 mouse_genomes_project 4 117607824 117610825 + MGP_CASTEiJ_P0067570 Hivep3 protein_coding protein_coding MGP_CASTEiJ_T0067571.1 MGP_CASTEiJ_G0027834.1 mouse_genomes_project 4 117607869 117758565 + Hivep3 protein_coding processed_transcript MGP_CASTEiJ_T0067572.1 MGP_CASTEiJ_G0027834.1 mouse_genomes_project 4 117639043 117759034 + Hivep3 protein_coding processed_transcript MGP_CASTEiJ_T0067573.1 MGP_CASTEiJ_G0027834.1 mouse_genomes_project 4 117698835 117886327 + Hivep3 protein_coding processed_transcript MGP_CASTEiJ_T0067574.1 MGP_CASTEiJ_G0027834.1 mouse_genomes_project 4 117698859 117759671 + Hivep3 protein_coding processed_transcript MGP_CASTEiJ_T0067575.1 MGP_CASTEiJ_G0027834.1 mouse_genomes_project 4 117698999 118031982 + MGP_CASTEiJ_P0067575 Hivep3 protein_coding protein_coding MGP_CASTEiJ_T0067576.1 MGP_CASTEiJ_G0027834.1 mouse_genomes_project 4 117987831 118028532 + MGP_CASTEiJ_P0067576 Hivep3 protein_coding protein_coding MGP_CASTEiJ_T0101599.1 MGP_CASTEiJ_G0038462.1 mouse_genomes_project 4 6508842 6510267 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101600.1 MGP_CASTEiJ_G0038462.1 mouse_genomes_project 4 6509507 6510505 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0067335.1 MGP_CASTEiJ_G0027781.1 mouse_genomes_project 4 115255337 115383324 + MGP_CASTEiJ_P0067335 Eri3 protein_coding protein_coding MGP_CASTEiJ_T0067336.1 MGP_CASTEiJ_G0027781.1 mouse_genomes_project 4 115257582 115288820 + MGP_CASTEiJ_P0067336 Eri3 protein_coding protein_coding MGP_CASTEiJ_T0067337.1 MGP_CASTEiJ_G0027781.1 mouse_genomes_project 4 115269642 115383324 + Eri3 protein_coding processed_transcript MGP_CASTEiJ_T0067338.1 MGP_CASTEiJ_G0027781.1 mouse_genomes_project 4 115288789 115321620 + MGP_CASTEiJ_P0067338 Eri3 protein_coding protein_coding MGP_CASTEiJ_T0067339.1 MGP_CASTEiJ_G0027781.1 mouse_genomes_project 4 115295187 115321279 + Eri3 protein_coding processed_transcript MGP_CASTEiJ_T0067340.1 MGP_CASTEiJ_G0027781.1 mouse_genomes_project 4 115344897 115383308 + Eri3 protein_coding processed_transcript MGP_CASTEiJ_T0069973.1 MGP_CASTEiJ_G0028337.1 mouse_genomes_project 4 155491833 155525914 + MGP_CASTEiJ_P0069973 Ssu72 protein_coding protein_coding MGP_CASTEiJ_T0069974.1 MGP_CASTEiJ_G0028337.1 mouse_genomes_project 4 155492158 155507566 + Ssu72 protein_coding retained_intron MGP_CASTEiJ_T0069975.1 MGP_CASTEiJ_G0028337.1 mouse_genomes_project 4 155492169 155524231 + MGP_CASTEiJ_P0069975 Ssu72 protein_coding protein_coding MGP_CASTEiJ_T0065820.1 MGP_CASTEiJ_G0027462.1 mouse_genomes_project 4 56449223 56624948 - MGP_CASTEiJ_P0065820 Svep1 protein_coding protein_coding MGP_CASTEiJ_T0065821.1 MGP_CASTEiJ_G0027462.1 mouse_genomes_project 4 56558241 56624964 - Svep1 protein_coding processed_transcript MGP_CASTEiJ_T0065822.1 MGP_CASTEiJ_G0027462.1 mouse_genomes_project 4 56559645 56625211 - Svep1 protein_coding processed_transcript MGP_CASTEiJ_T0065823.1 MGP_CASTEiJ_G0027462.1 mouse_genomes_project 4 56596052 56625040 - Svep1 protein_coding processed_transcript MGP_CASTEiJ_T0065562.1 MGP_CASTEiJ_G0027393.1 mouse_genomes_project 4 44030997 44074806 - MGP_CASTEiJ_P0065562 Xpa protein_coding protein_coding MGP_CASTEiJ_T0065565.1 MGP_CASTEiJ_G0027393.1 mouse_genomes_project 4 44051785 44074635 - MGP_CASTEiJ_P0065565 Xpa protein_coding unknown_likely_coding MGP_CASTEiJ_T0065566.1 MGP_CASTEiJ_G0027393.1 mouse_genomes_project 4 44051790 44062307 - Xpa protein_coding processed_transcript MGP_CASTEiJ_T0065567.1 MGP_CASTEiJ_G0027393.1 mouse_genomes_project 4 44051790 44062274 - MGP_CASTEiJ_P0065567 Xpa protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065568.1 MGP_CASTEiJ_G0027393.1 mouse_genomes_project 4 44051790 44074806 - MGP_CASTEiJ_P0065568 Xpa protein_coding protein_coding MGP_CASTEiJ_T0065569.1 MGP_CASTEiJ_G0027393.1 mouse_genomes_project 4 44059595 44074799 - MGP_CASTEiJ_P0065569 Xpa protein_coding protein_coding MGP_CASTEiJ_T0065570.1 MGP_CASTEiJ_G0027393.1 mouse_genomes_project 4 44061036 44063192 - Xpa protein_coding processed_transcript MGP_CASTEiJ_T0064525.1 MGP_CASTEiJ_G0027179.1 mouse_genomes_project 4 473060 514744 - MGP_CASTEiJ_P0064525 Plag1 protein_coding protein_coding MGP_CASTEiJ_T0064526.1 MGP_CASTEiJ_G0027179.1 mouse_genomes_project 4 476933 514767 - MGP_CASTEiJ_P0064526 Plag1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064527.1 MGP_CASTEiJ_G0027179.1 mouse_genomes_project 4 477592 514785 - MGP_CASTEiJ_P0064527 Plag1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064528.1 MGP_CASTEiJ_G0027179.1 mouse_genomes_project 4 485265 514755 - Plag1 protein_coding retained_intron MGP_CASTEiJ_T0014148.1 MGP_CASTEiJ_G0012311.1 mouse_genomes_project 4 77183507 77183910 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099801.1 MGP_CASTEiJ_G0036714.1 mouse_genomes_project 4 90465479 90465587 - Gm22605 snRNA snRNA MGP_CASTEiJ_T0014182.1 MGP_CASTEiJ_G0012345.1 mouse_genomes_project 4 91418436 91418694 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067634.1 MGP_CASTEiJ_G0027849.1 mouse_genomes_project 4 119025945 119066698 - MGP_CASTEiJ_P0067634 Zmpste24 protein_coding protein_coding MGP_CASTEiJ_T0067635.1 MGP_CASTEiJ_G0027849.1 mouse_genomes_project 4 119035723 119046146 - Zmpste24 protein_coding processed_transcript MGP_CASTEiJ_T0067636.1 MGP_CASTEiJ_G0027849.1 mouse_genomes_project 4 119051386 119064124 - MGP_CASTEiJ_P0067636 Zmpste24 protein_coding protein_coding MGP_CASTEiJ_T0067603.1 MGP_CASTEiJ_G0027843.1 mouse_genomes_project 4 118710219 118780857 - MGP_CASTEiJ_P0067603 Nfyc protein_coding protein_coding MGP_CASTEiJ_T0067604.1 MGP_CASTEiJ_G0027843.1 mouse_genomes_project 4 118710219 118770852 - MGP_CASTEiJ_P0067604 Nfyc protein_coding protein_coding MGP_CASTEiJ_T0067605.1 MGP_CASTEiJ_G0027843.1 mouse_genomes_project 4 118710219 118790286 - MGP_CASTEiJ_P0067605 Nfyc protein_coding protein_coding MGP_CASTEiJ_T0067606.1 MGP_CASTEiJ_G0027843.1 mouse_genomes_project 4 118710735 118714961 - Nfyc protein_coding processed_transcript MGP_CASTEiJ_T0067607.1 MGP_CASTEiJ_G0027843.1 mouse_genomes_project 4 118710958 118745287 - MGP_CASTEiJ_P0067607 Nfyc protein_coding protein_coding MGP_CASTEiJ_T0067608.1 MGP_CASTEiJ_G0027843.1 mouse_genomes_project 4 118710978 118718216 - Nfyc protein_coding processed_transcript MGP_CASTEiJ_T0067609.1 MGP_CASTEiJ_G0027843.1 mouse_genomes_project 4 118714450 118721032 - Nfyc protein_coding processed_transcript MGP_CASTEiJ_T0067610.1 MGP_CASTEiJ_G0027843.1 mouse_genomes_project 4 118718039 118780835 - MGP_CASTEiJ_P0067610 Nfyc protein_coding protein_coding MGP_CASTEiJ_T0067611.1 MGP_CASTEiJ_G0027843.1 mouse_genomes_project 4 118721693 118780847 - MGP_CASTEiJ_P0067611 Nfyc protein_coding protein_coding MGP_CASTEiJ_T0067612.1 MGP_CASTEiJ_G0027843.1 mouse_genomes_project 4 118734430 118780858 - MGP_CASTEiJ_P0067612 Nfyc protein_coding protein_coding MGP_CASTEiJ_T0064741.1 MGP_CASTEiJ_G0027223.1 mouse_genomes_project 4 11542563 11596780 + MGP_CASTEiJ_P0064741 Tmem55a protein_coding protein_coding MGP_CASTEiJ_T0007699.1 MGP_CASTEiJ_G0006312.1 mouse_genomes_project 4 89507853 89508952 - 4930577H14Rik lincRNA lincRNA MGP_CASTEiJ_T0067959.1 MGP_CASTEiJ_G0027931.1 mouse_genomes_project 4 126598773 126599519 - MGP_CASTEiJ_P0067959 Hmgb4 protein_coding protein_coding MGP_CASTEiJ_T0070118.1 MGP_CASTEiJ_G0028364.1 mouse_genomes_project 4 156008971 156016523 + MGP_CASTEiJ_P0070118 Perm1 protein_coding protein_coding MGP_CASTEiJ_T0068501.1 MGP_CASTEiJ_G0028034.1 mouse_genomes_project 4 132514443 132557804 - MGP_CASTEiJ_P0068501 Rps6ka1 protein_coding protein_coding MGP_CASTEiJ_T0068502.1 MGP_CASTEiJ_G0028034.1 mouse_genomes_project 4 132514452 132557956 - MGP_CASTEiJ_P0068502 Rps6ka1 protein_coding protein_coding MGP_CASTEiJ_T0068503.1 MGP_CASTEiJ_G0028034.1 mouse_genomes_project 4 132514452 132540859 - MGP_CASTEiJ_P0068503 Rps6ka1 protein_coding protein_coding MGP_CASTEiJ_T0068504.1 MGP_CASTEiJ_G0028034.1 mouse_genomes_project 4 132514983 132538455 - MGP_CASTEiJ_P0068504 Rps6ka1 protein_coding protein_coding MGP_CASTEiJ_T0068505.1 MGP_CASTEiJ_G0028034.1 mouse_genomes_project 4 132515224 132539173 - MGP_CASTEiJ_P0068505 Rps6ka1 protein_coding protein_coding MGP_CASTEiJ_T0068506.1 MGP_CASTEiJ_G0028034.1 mouse_genomes_project 4 132517664 132527336 - Rps6ka1 protein_coding retained_intron MGP_CASTEiJ_T0068507.1 MGP_CASTEiJ_G0028034.1 mouse_genomes_project 4 132526573 132527448 - Rps6ka1 protein_coding retained_intron MGP_CASTEiJ_T0068508.1 MGP_CASTEiJ_G0028034.1 mouse_genomes_project 4 132538105 132557746 - Rps6ka1 protein_coding processed_transcript MGP_CASTEiJ_T0014263.1 MGP_CASTEiJ_G0012426.1 mouse_genomes_project 4 118862127 118862541 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066874.1 MGP_CASTEiJ_G0027688.1 mouse_genomes_project 4 106578514 106582362 - Prpf38a protein_coding processed_transcript MGP_CASTEiJ_T0066875.1 MGP_CASTEiJ_G0027688.1 mouse_genomes_project 4 106580205 106595621 - MGP_CASTEiJ_P0066875 Prpf38a protein_coding protein_coding MGP_CASTEiJ_T0066876.1 MGP_CASTEiJ_G0027688.1 mouse_genomes_project 4 106580208 106588059 - Prpf38a protein_coding processed_transcript MGP_CASTEiJ_T0067933.1 MGP_CASTEiJ_G0027921.1 mouse_genomes_project 4 125319833 125369950 + MGP_CASTEiJ_P0067933 Zmym6 protein_coding protein_coding MGP_CASTEiJ_T0067934.1 MGP_CASTEiJ_G0027921.1 mouse_genomes_project 4 125319847 125369952 + MGP_CASTEiJ_P0067934 Zmym6 protein_coding protein_coding MGP_CASTEiJ_T0067935.1 MGP_CASTEiJ_G0027921.1 mouse_genomes_project 4 125319892 125352886 + Zmym6 protein_coding processed_transcript MGP_CASTEiJ_T0067936.1 MGP_CASTEiJ_G0027921.1 mouse_genomes_project 4 125320028 125348821 + MGP_CASTEiJ_P0067936 Zmym6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067937.1 MGP_CASTEiJ_G0027921.1 mouse_genomes_project 4 125320028 125348721 + MGP_CASTEiJ_P0067937 Zmym6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067938.1 MGP_CASTEiJ_G0027921.1 mouse_genomes_project 4 125320741 125330761 + Zmym6 protein_coding processed_transcript MGP_CASTEiJ_T0067939.1 MGP_CASTEiJ_G0027921.1 mouse_genomes_project 4 125329023 125330904 + Zmym6 protein_coding processed_transcript MGP_CASTEiJ_T0067940.1 MGP_CASTEiJ_G0027921.1 mouse_genomes_project 4 125348868 125368686 + MGP_CASTEiJ_P0067940 Zmym6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067941.1 MGP_CASTEiJ_G0027921.1 mouse_genomes_project 4 125348868 125368686 + MGP_CASTEiJ_P0067941 Zmym6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067942.1 MGP_CASTEiJ_G0027921.1 mouse_genomes_project 4 125349237 125352764 + Zmym6 protein_coding processed_transcript MGP_CASTEiJ_T0013998.1 MGP_CASTEiJ_G0012161.1 mouse_genomes_project 4 22681480 22681865 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065187.1 MGP_CASTEiJ_G0027331.1 mouse_genomes_project 4 40551553 40572583 + Phf24 protein_coding processed_transcript MGP_CASTEiJ_T0065188.1 MGP_CASTEiJ_G0027331.1 mouse_genomes_project 4 40551574 40568529 + MGP_CASTEiJ_P0065188 Phf24 protein_coding protein_coding MGP_CASTEiJ_T0065189.1 MGP_CASTEiJ_G0027331.1 mouse_genomes_project 4 40552144 40579447 + MGP_CASTEiJ_P0065189 Phf24 protein_coding protein_coding MGP_CASTEiJ_T0065190.1 MGP_CASTEiJ_G0027331.1 mouse_genomes_project 4 40552163 40579447 + MGP_CASTEiJ_P0065190 Phf24 protein_coding protein_coding MGP_CASTEiJ_T0065191.1 MGP_CASTEiJ_G0027331.1 mouse_genomes_project 4 40552227 40575049 + MGP_CASTEiJ_P0065191 Phf24 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065192.1 MGP_CASTEiJ_G0027331.1 mouse_genomes_project 4 40557125 40568495 + MGP_CASTEiJ_P0065192 Phf24 protein_coding protein_coding MGP_CASTEiJ_T0065193.1 MGP_CASTEiJ_G0027331.1 mouse_genomes_project 4 40568256 40575519 + MGP_CASTEiJ_P0065193 Phf24 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065194.1 MGP_CASTEiJ_G0027331.1 mouse_genomes_project 4 40568616 40574196 + MGP_CASTEiJ_P0065194 Phf24 protein_coding protein_coding MGP_CASTEiJ_T0065195.1 MGP_CASTEiJ_G0027331.1 mouse_genomes_project 4 40572936 40574529 + MGP_CASTEiJ_P0065195 Phf24 protein_coding protein_coding MGP_CASTEiJ_T0014226.1 MGP_CASTEiJ_G0012389.1 mouse_genomes_project 4 106496113 106496496 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064789.1 MGP_CASTEiJ_G0027242.1 mouse_genomes_project 4 16969397 17644280 - MGP_CASTEiJ_P0064789 Nkain3 protein_coding protein_coding MGP_CASTEiJ_T0064790.1 MGP_CASTEiJ_G0027242.1 mouse_genomes_project 4 17092403 17644639 - MGP_CASTEiJ_P0064790 Nkain3 protein_coding protein_coding MGP_CASTEiJ_T0014335.1 MGP_CASTEiJ_G0012498.1 mouse_genomes_project 4 149101379 149101520 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067151.1 MGP_CASTEiJ_G0027750.1 mouse_genomes_project 4 113743059 113755311 - MGP_CASTEiJ_P0067151 Lurap1 protein_coding protein_coding MGP_CASTEiJ_T0067154.1 MGP_CASTEiJ_G0027750.1 mouse_genomes_project 4 113748186 113765006 - Lurap1 protein_coding processed_transcript MGP_CASTEiJ_T0098382.1 MGP_CASTEiJ_G0035313.1 mouse_genomes_project 4 121884170 121885692 - pseudogene pseudogene MGP_CASTEiJ_T0069731.1 MGP_CASTEiJ_G0028298.1 mouse_genomes_project 4 152030474 152119998 + Nphp4 protein_coding processed_transcript MGP_CASTEiJ_T0069732.1 MGP_CASTEiJ_G0028298.1 mouse_genomes_project 4 152031679 152120006 + MGP_CASTEiJ_P0069732 Nphp4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069733.1 MGP_CASTEiJ_G0028298.1 mouse_genomes_project 4 152031919 152120133 + MGP_CASTEiJ_P0069733 Nphp4 protein_coding protein_coding MGP_CASTEiJ_T0069734.1 MGP_CASTEiJ_G0028298.1 mouse_genomes_project 4 152031955 152046279 + Nphp4 protein_coding processed_transcript MGP_CASTEiJ_T0069735.1 MGP_CASTEiJ_G0028298.1 mouse_genomes_project 4 152038181 152119996 + MGP_CASTEiJ_P0069735 Nphp4 protein_coding protein_coding MGP_CASTEiJ_T0069736.1 MGP_CASTEiJ_G0028298.1 mouse_genomes_project 4 152044186 152053986 + Nphp4 protein_coding processed_transcript MGP_CASTEiJ_T0069737.1 MGP_CASTEiJ_G0028298.1 mouse_genomes_project 4 152058686 152071647 + Nphp4 protein_coding processed_transcript MGP_CASTEiJ_T0068459.1 MGP_CASTEiJ_G0028022.1 mouse_genomes_project 4 131991310 132043892 + MGP_CASTEiJ_P0068459 Slc9a1 protein_coding protein_coding MGP_CASTEiJ_T0068460.1 MGP_CASTEiJ_G0028022.1 mouse_genomes_project 4 131992248 132032483 + Slc9a1 protein_coding processed_transcript MGP_CASTEiJ_T0068461.1 MGP_CASTEiJ_G0028022.1 mouse_genomes_project 4 132036635 132040745 + Slc9a1 protein_coding processed_transcript MGP_CASTEiJ_T0068462.1 MGP_CASTEiJ_G0028022.1 mouse_genomes_project 4 132039670 132040355 + Slc9a1 protein_coding processed_transcript MGP_CASTEiJ_T0068463.1 MGP_CASTEiJ_G0028022.1 mouse_genomes_project 4 132040161 132042510 + Slc9a1 protein_coding processed_transcript MGP_CASTEiJ_T0014149.1 MGP_CASTEiJ_G0012312.1 mouse_genomes_project 4 77310003 77310935 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069255.1 MGP_CASTEiJ_G0028207.1 mouse_genomes_project 4 143977142 143996510 - MGP_CASTEiJ_P0069255 Pramef12 protein_coding protein_coding MGP_CASTEiJ_T0069256.1 MGP_CASTEiJ_G0028207.1 mouse_genomes_project 4 143980494 143996463 - MGP_CASTEiJ_P0069256 Pramef12 protein_coding protein_coding MGP_CASTEiJ_T0067987.1 MGP_CASTEiJ_G0027936.1 mouse_genomes_project 4 127124383 127148740 - MGP_CASTEiJ_P0067987 Zfp362 protein_coding protein_coding MGP_CASTEiJ_T0067988.1 MGP_CASTEiJ_G0027936.1 mouse_genomes_project 4 127124399 127148652 - MGP_CASTEiJ_P0067988 Zfp362 protein_coding protein_coding MGP_CASTEiJ_T0067989.1 MGP_CASTEiJ_G0027936.1 mouse_genomes_project 4 127128378 127144038 - MGP_CASTEiJ_P0067989 Zfp362 protein_coding protein_coding MGP_CASTEiJ_T0067990.1 MGP_CASTEiJ_G0027936.1 mouse_genomes_project 4 127143045 127143817 - Zfp362 protein_coding processed_transcript MGP_CASTEiJ_T0102311.1 MGP_CASTEiJ_G0039036.1 mouse_genomes_project 4 86167150 86167695 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0067278.1 MGP_CASTEiJ_G0027772.1 mouse_genomes_project 4 114766422 114785751 + MGP_CASTEiJ_P0067278 Ptch2 protein_coding protein_coding MGP_CASTEiJ_T0067279.1 MGP_CASTEiJ_G0027772.1 mouse_genomes_project 4 114766443 114785751 + MGP_CASTEiJ_P0067279 Ptch2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067280.1 MGP_CASTEiJ_G0027772.1 mouse_genomes_project 4 114775558 114776904 + Ptch2 protein_coding retained_intron MGP_CASTEiJ_T0067281.1 MGP_CASTEiJ_G0027772.1 mouse_genomes_project 4 114775885 114779170 + MGP_CASTEiJ_P0067281 Ptch2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067282.1 MGP_CASTEiJ_G0027772.1 mouse_genomes_project 4 114780889 114781743 + Ptch2 protein_coding retained_intron MGP_CASTEiJ_T0067283.1 MGP_CASTEiJ_G0027772.1 mouse_genomes_project 4 114783927 114788041 + Ptch2 protein_coding retained_intron MGP_CASTEiJ_T0099781.1 MGP_CASTEiJ_G0036694.1 mouse_genomes_project 4 37553855 37553917 - Gm26087 snRNA snRNA MGP_CASTEiJ_T0007649.1 MGP_CASTEiJ_G0006270.1 mouse_genomes_project 4 44929605 44932101 - Gm568 lincRNA lincRNA MGP_CASTEiJ_T0068618.1 MGP_CASTEiJ_G0028056.1 mouse_genomes_project 4 133193570 133199326 + MGP_CASTEiJ_P0068618 Stmn1 protein_coding protein_coding MGP_CASTEiJ_T0068619.1 MGP_CASTEiJ_G0028056.1 mouse_genomes_project 4 133193649 133195938 + Stmn1 protein_coding processed_transcript MGP_CASTEiJ_T0068620.1 MGP_CASTEiJ_G0028056.1 mouse_genomes_project 4 133193656 133198406 + MGP_CASTEiJ_P0068620 Stmn1 protein_coding protein_coding MGP_CASTEiJ_T0068621.1 MGP_CASTEiJ_G0028056.1 mouse_genomes_project 4 133193659 133199147 + MGP_CASTEiJ_P0068621 Stmn1 protein_coding protein_coding MGP_CASTEiJ_T0068622.1 MGP_CASTEiJ_G0028056.1 mouse_genomes_project 4 133194998 133198982 + MGP_CASTEiJ_P0068622 Stmn1 protein_coding protein_coding MGP_CASTEiJ_T0065702.1 MGP_CASTEiJ_G0027432.1 mouse_genomes_project 4 51025853 51026908 - MGP_CASTEiJ_P0065702 Olfr273 protein_coding protein_coding MGP_CASTEiJ_T0065703.1 MGP_CASTEiJ_G0027432.1 mouse_genomes_project 4 51025893 51028794 - MGP_CASTEiJ_P0065703 Olfr273 protein_coding protein_coding MGP_CASTEiJ_T0014300.1 MGP_CASTEiJ_G0012463.1 mouse_genomes_project 4 132551067 132551250 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014208.1 MGP_CASTEiJ_G0012371.1 mouse_genomes_project 4 100870654 100870870 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013934.1 MGP_CASTEiJ_G0012097.1 mouse_genomes_project 4 1102186 1102702 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064747.1 MGP_CASTEiJ_G0027225.1 mouse_genomes_project 4 11944114 11967541 + MGP_CASTEiJ_P0064747 Tmem64 protein_coding protein_coding MGP_CASTEiJ_T0064748.1 MGP_CASTEiJ_G0027225.1 mouse_genomes_project 4 11944137 11990037 + MGP_CASTEiJ_P0064748 Tmem64 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068148.1 MGP_CASTEiJ_G0027963.1 mouse_genomes_project 4 128069086 128083892 - MGP_CASTEiJ_P0068148 Txlna protein_coding protein_coding MGP_CASTEiJ_T0068149.1 MGP_CASTEiJ_G0027963.1 mouse_genomes_project 4 128069091 128083469 - Txlna protein_coding retained_intron MGP_CASTEiJ_T0068150.1 MGP_CASTEiJ_G0027963.1 mouse_genomes_project 4 128069091 128083632 - MGP_CASTEiJ_P0068150 Txlna protein_coding protein_coding MGP_CASTEiJ_T0068151.1 MGP_CASTEiJ_G0027963.1 mouse_genomes_project 4 128075177 128083892 - MGP_CASTEiJ_P0068151 Txlna protein_coding protein_coding MGP_CASTEiJ_T0068152.1 MGP_CASTEiJ_G0027963.1 mouse_genomes_project 4 128077399 128083805 - MGP_CASTEiJ_P0068152 Txlna protein_coding protein_coding MGP_CASTEiJ_T0068153.1 MGP_CASTEiJ_G0027963.1 mouse_genomes_project 4 128077415 128083786 - MGP_CASTEiJ_P0068153 Txlna protein_coding protein_coding MGP_CASTEiJ_T0068154.1 MGP_CASTEiJ_G0027963.1 mouse_genomes_project 4 128082291 128083787 - MGP_CASTEiJ_P0068154 Txlna protein_coding protein_coding MGP_CASTEiJ_T0068717.1 MGP_CASTEiJ_G0028075.1 mouse_genomes_project 4 134364954 134399986 - MGP_CASTEiJ_P0068717 Grhl3 protein_coding protein_coding MGP_CASTEiJ_T0068718.1 MGP_CASTEiJ_G0028075.1 mouse_genomes_project 4 134365637 134402014 - MGP_CASTEiJ_P0068718 Grhl3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068719.1 MGP_CASTEiJ_G0028075.1 mouse_genomes_project 4 134365722 134399780 - MGP_CASTEiJ_P0068719 Grhl3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067798.1 MGP_CASTEiJ_G0027895.1 mouse_genomes_project 4 123616677 123846928 + MGP_CASTEiJ_P0067798 Grik3 protein_coding protein_coding MGP_CASTEiJ_T0067799.1 MGP_CASTEiJ_G0027895.1 mouse_genomes_project 4 123616696 123839409 + MGP_CASTEiJ_P0067799 Grik3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067800.1 MGP_CASTEiJ_G0027895.1 mouse_genomes_project 4 123616818 123839551 + MGP_CASTEiJ_P0067800 Grik3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067080.1 MGP_CASTEiJ_G0027735.1 mouse_genomes_project 4 113212298 113218848 + protein_coding processed_transcript MGP_CASTEiJ_T0067081.1 MGP_CASTEiJ_G0027735.1 mouse_genomes_project 4 113212304 113227294 + MGP_CASTEiJ_P0067081 protein_coding protein_coding MGP_CASTEiJ_T0068583.1 MGP_CASTEiJ_G0028047.1 mouse_genomes_project 4 132951397 132953705 - MGP_CASTEiJ_P0068583 Zfp593 protein_coding protein_coding MGP_CASTEiJ_T0068584.1 MGP_CASTEiJ_G0028047.1 mouse_genomes_project 4 132951415 132953655 - Zfp593 protein_coding processed_transcript MGP_CASTEiJ_T0067554.1 MGP_CASTEiJ_G0027831.1 mouse_genomes_project 4 117406764 117445879 + MGP_CASTEiJ_P0067554 Foxj3 protein_coding protein_coding MGP_CASTEiJ_T0067555.1 MGP_CASTEiJ_G0027831.1 mouse_genomes_project 4 117409428 117502516 + MGP_CASTEiJ_P0067555 Foxj3 protein_coding protein_coding MGP_CASTEiJ_T0067556.1 MGP_CASTEiJ_G0027831.1 mouse_genomes_project 4 117409452 117462129 + MGP_CASTEiJ_P0067556 Foxj3 protein_coding protein_coding MGP_CASTEiJ_T0067557.1 MGP_CASTEiJ_G0027831.1 mouse_genomes_project 4 117409455 117502516 + MGP_CASTEiJ_P0067557 Foxj3 protein_coding protein_coding MGP_CASTEiJ_T0067558.1 MGP_CASTEiJ_G0027831.1 mouse_genomes_project 4 117409459 117475469 + Foxj3 protein_coding retained_intron MGP_CASTEiJ_T0067559.1 MGP_CASTEiJ_G0027831.1 mouse_genomes_project 4 117409465 117462138 + MGP_CASTEiJ_P0067559 Foxj3 protein_coding protein_coding MGP_CASTEiJ_T0067560.1 MGP_CASTEiJ_G0027831.1 mouse_genomes_project 4 117409474 117435109 + Foxj3 protein_coding retained_intron MGP_CASTEiJ_T0067561.1 MGP_CASTEiJ_G0027831.1 mouse_genomes_project 4 117409546 117445906 + MGP_CASTEiJ_P0067561 Foxj3 protein_coding protein_coding MGP_CASTEiJ_T0067562.1 MGP_CASTEiJ_G0027831.1 mouse_genomes_project 4 117410291 117446007 + MGP_CASTEiJ_P0067562 Foxj3 protein_coding protein_coding MGP_CASTEiJ_T0067563.1 MGP_CASTEiJ_G0027831.1 mouse_genomes_project 4 117493287 117495355 + Foxj3 protein_coding processed_transcript MGP_CASTEiJ_T0013942.1 MGP_CASTEiJ_G0012105.1 mouse_genomes_project 4 3070846 3071451 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007769.1 MGP_CASTEiJ_G0006364.1 mouse_genomes_project 4 127666542 127667782 + lincRNA lincRNA MGP_CASTEiJ_T0067973.1 MGP_CASTEiJ_G0027934.1 mouse_genomes_project 4 127005129 127103759 + MGP_CASTEiJ_P0067973 Phc2 protein_coding protein_coding MGP_CASTEiJ_T0067974.1 MGP_CASTEiJ_G0027934.1 mouse_genomes_project 4 127005165 127062828 + MGP_CASTEiJ_P0067974 Phc2 protein_coding protein_coding MGP_CASTEiJ_T0067975.1 MGP_CASTEiJ_G0027934.1 mouse_genomes_project 4 127039125 127056254 + Phc2 protein_coding retained_intron MGP_CASTEiJ_T0067976.1 MGP_CASTEiJ_G0027934.1 mouse_genomes_project 4 127039182 127103759 + MGP_CASTEiJ_P0067976 Phc2 protein_coding protein_coding MGP_CASTEiJ_T0067977.1 MGP_CASTEiJ_G0027934.1 mouse_genomes_project 4 127060797 127075242 + Phc2 protein_coding retained_intron MGP_CASTEiJ_T0067978.1 MGP_CASTEiJ_G0027934.1 mouse_genomes_project 4 127078443 127103759 + MGP_CASTEiJ_P0067978 Phc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067979.1 MGP_CASTEiJ_G0027934.1 mouse_genomes_project 4 127078447 127103759 + MGP_CASTEiJ_P0067979 Phc2 protein_coding protein_coding MGP_CASTEiJ_T0067980.1 MGP_CASTEiJ_G0027934.1 mouse_genomes_project 4 127078544 127099105 + MGP_CASTEiJ_P0067980 Phc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067981.1 MGP_CASTEiJ_G0027934.1 mouse_genomes_project 4 127078572 127095899 + MGP_CASTEiJ_P0067981 Phc2 protein_coding protein_coding MGP_CASTEiJ_T0067982.1 MGP_CASTEiJ_G0027934.1 mouse_genomes_project 4 127078795 127098962 + MGP_CASTEiJ_P0067982 Phc2 protein_coding protein_coding MGP_CASTEiJ_T0067983.1 MGP_CASTEiJ_G0027934.1 mouse_genomes_project 4 127078833 127094361 + MGP_CASTEiJ_P0067983 Phc2 protein_coding protein_coding MGP_CASTEiJ_T0067984.1 MGP_CASTEiJ_G0027934.1 mouse_genomes_project 4 127078844 127098022 + MGP_CASTEiJ_P0067984 Phc2 protein_coding protein_coding MGP_CASTEiJ_T0004465.1 MGP_CASTEiJ_G0003881.1 mouse_genomes_project 4 148604677 148621846 + Ube4bos1 antisense antisense MGP_CASTEiJ_T0004466.1 MGP_CASTEiJ_G0003881.1 mouse_genomes_project 4 148604706 148615934 + Ube4bos1 antisense antisense MGP_CASTEiJ_T0069675.1 MGP_CASTEiJ_G0028290.1 mouse_genomes_project 4 151715226 151819972 + MGP_CASTEiJ_P0069675 Acot7 protein_coding protein_coding MGP_CASTEiJ_T0069676.1 MGP_CASTEiJ_G0028290.1 mouse_genomes_project 4 151722861 151764545 + Acot7 protein_coding processed_transcript MGP_CASTEiJ_T0069677.1 MGP_CASTEiJ_G0028290.1 mouse_genomes_project 4 151723230 151819975 + MGP_CASTEiJ_P0069677 Acot7 protein_coding protein_coding MGP_CASTEiJ_T0069678.1 MGP_CASTEiJ_G0028290.1 mouse_genomes_project 4 151723302 151819967 + MGP_CASTEiJ_P0069678 Acot7 protein_coding protein_coding MGP_CASTEiJ_T0069679.1 MGP_CASTEiJ_G0028290.1 mouse_genomes_project 4 151744142 151819967 + MGP_CASTEiJ_P0069679 Acot7 protein_coding protein_coding MGP_CASTEiJ_T0069680.1 MGP_CASTEiJ_G0028290.1 mouse_genomes_project 4 151744197 151764625 + Acot7 protein_coding processed_transcript MGP_CASTEiJ_T0010318.1 MGP_CASTEiJ_G0008506.1 mouse_genomes_project 4 118725425 118725517 + Mir30f miRNA miRNA MGP_CASTEiJ_T0067167.1 MGP_CASTEiJ_G0027752.1 mouse_genomes_project 4 113788641 113789567 + MGP_CASTEiJ_P0067167 1700042G07Rik protein_coding protein_coding MGP_CASTEiJ_T0068361.1 MGP_CASTEiJ_G0028003.1 mouse_genomes_project 4 131073788 131086159 + MGP_CASTEiJ_P0068361 Dnajc8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068362.1 MGP_CASTEiJ_G0028003.1 mouse_genomes_project 4 131073788 131094113 + MGP_CASTEiJ_P0068362 Dnajc8 protein_coding protein_coding MGP_CASTEiJ_T0068363.1 MGP_CASTEiJ_G0028003.1 mouse_genomes_project 4 131073805 131094032 + Dnajc8 protein_coding retained_intron MGP_CASTEiJ_T0068364.1 MGP_CASTEiJ_G0028003.1 mouse_genomes_project 4 131073814 131083729 + MGP_CASTEiJ_P0068364 Dnajc8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068365.1 MGP_CASTEiJ_G0028003.1 mouse_genomes_project 4 131073815 131093565 + MGP_CASTEiJ_P0068365 Dnajc8 protein_coding protein_coding MGP_CASTEiJ_T0068366.1 MGP_CASTEiJ_G0028003.1 mouse_genomes_project 4 131073819 131090982 + MGP_CASTEiJ_P0068366 Dnajc8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068367.1 MGP_CASTEiJ_G0028003.1 mouse_genomes_project 4 131073819 131093588 + MGP_CASTEiJ_P0068367 Dnajc8 protein_coding protein_coding MGP_CASTEiJ_T0068368.1 MGP_CASTEiJ_G0028003.1 mouse_genomes_project 4 131073878 131093507 + MGP_CASTEiJ_P0068368 Dnajc8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068369.1 MGP_CASTEiJ_G0028003.1 mouse_genomes_project 4 131073897 131093826 + MGP_CASTEiJ_P0068369 Dnajc8 protein_coding protein_coding MGP_CASTEiJ_T0068370.1 MGP_CASTEiJ_G0028003.1 mouse_genomes_project 4 131074266 131084148 + Dnajc8 protein_coding retained_intron MGP_CASTEiJ_T0068371.1 MGP_CASTEiJ_G0028003.1 mouse_genomes_project 4 131086171 131093562 + MGP_CASTEiJ_P0068371 Dnajc8 protein_coding protein_coding MGP_CASTEiJ_T0068372.1 MGP_CASTEiJ_G0028003.1 mouse_genomes_project 4 131091681 131093811 + Dnajc8 protein_coding retained_intron MGP_CASTEiJ_T0066519.1 MGP_CASTEiJ_G0027626.1 mouse_genomes_project 4 99124419 99176333 + MGP_CASTEiJ_P0066519 Ak4 protein_coding protein_coding MGP_CASTEiJ_T0066520.1 MGP_CASTEiJ_G0027626.1 mouse_genomes_project 4 99124431 99176333 + MGP_CASTEiJ_P0066520 Ak4 protein_coding protein_coding MGP_CASTEiJ_T0066521.1 MGP_CASTEiJ_G0027626.1 mouse_genomes_project 4 99124461 99176333 + MGP_CASTEiJ_P0066521 Ak4 protein_coding protein_coding MGP_CASTEiJ_T0066522.1 MGP_CASTEiJ_G0027626.1 mouse_genomes_project 4 99124848 99169850 + MGP_CASTEiJ_P0066522 Ak4 protein_coding protein_coding MGP_CASTEiJ_T0066523.1 MGP_CASTEiJ_G0027626.1 mouse_genomes_project 4 99124875 99172335 + MGP_CASTEiJ_P0066523 Ak4 protein_coding protein_coding MGP_CASTEiJ_T0066524.1 MGP_CASTEiJ_G0027626.1 mouse_genomes_project 4 99125643 99173016 + Ak4 protein_coding processed_transcript MGP_CASTEiJ_T0066525.1 MGP_CASTEiJ_G0027626.1 mouse_genomes_project 4 99155247 99173115 + MGP_CASTEiJ_P0066525 Ak4 protein_coding protein_coding MGP_CASTEiJ_T0017314.1 MGP_CASTEiJ_G0014869.1 mouse_genomes_project 4 82885214 83179522 + processed_transcript processed_transcript MGP_CASTEiJ_T0065904.1 MGP_CASTEiJ_G0027483.1 mouse_genomes_project 4 59136190 59167190 - Fkbp15 protein_coding processed_transcript MGP_CASTEiJ_T0065905.1 MGP_CASTEiJ_G0027483.1 mouse_genomes_project 4 59136190 59198485 - MGP_CASTEiJ_P0065905 Fkbp15 protein_coding protein_coding MGP_CASTEiJ_T0065906.1 MGP_CASTEiJ_G0027483.1 mouse_genomes_project 4 59145188 59198563 - MGP_CASTEiJ_P0065906 Fkbp15 protein_coding protein_coding MGP_CASTEiJ_T0065907.1 MGP_CASTEiJ_G0027483.1 mouse_genomes_project 4 59152620 59198509 - MGP_CASTEiJ_P0065907 Fkbp15 protein_coding protein_coding MGP_CASTEiJ_T0065908.1 MGP_CASTEiJ_G0027483.1 mouse_genomes_project 4 59154651 59198549 - MGP_CASTEiJ_P0065908 Fkbp15 protein_coding protein_coding MGP_CASTEiJ_T0065909.1 MGP_CASTEiJ_G0027483.1 mouse_genomes_project 4 59179831 59198484 - Fkbp15 protein_coding processed_transcript MGP_CASTEiJ_T0065008.1 MGP_CASTEiJ_G0027286.1 mouse_genomes_project 4 32163919 32248576 - MGP_CASTEiJ_P0065008 Zfp292 protein_coding protein_coding MGP_CASTEiJ_T0065009.1 MGP_CASTEiJ_G0027286.1 mouse_genomes_project 4 32163919 32248546 - MGP_CASTEiJ_P0065009 Zfp292 protein_coding protein_coding MGP_CASTEiJ_T0069558.1 MGP_CASTEiJ_G0028272.1 mouse_genomes_project 4 150312495 150326143 - MGP_CASTEiJ_P0069558 Park7 protein_coding protein_coding MGP_CASTEiJ_T0069559.1 MGP_CASTEiJ_G0028272.1 mouse_genomes_project 4 150312495 150330677 - MGP_CASTEiJ_P0069559 Park7 protein_coding protein_coding MGP_CASTEiJ_T0069560.1 MGP_CASTEiJ_G0028272.1 mouse_genomes_project 4 150312507 150325843 - MGP_CASTEiJ_P0069560 Park7 protein_coding protein_coding MGP_CASTEiJ_T0069561.1 MGP_CASTEiJ_G0028272.1 mouse_genomes_project 4 150312598 150324621 - MGP_CASTEiJ_P0069561 Park7 protein_coding protein_coding MGP_CASTEiJ_T0069562.1 MGP_CASTEiJ_G0028272.1 mouse_genomes_project 4 150312601 150325868 - MGP_CASTEiJ_P0069562 Park7 protein_coding protein_coding MGP_CASTEiJ_T0069563.1 MGP_CASTEiJ_G0028272.1 mouse_genomes_project 4 150312746 150317239 - Park7 protein_coding processed_transcript MGP_CASTEiJ_T0069564.1 MGP_CASTEiJ_G0028272.1 mouse_genomes_project 4 150316421 150325700 - MGP_CASTEiJ_P0069564 Park7 protein_coding protein_coding MGP_CASTEiJ_T0069565.1 MGP_CASTEiJ_G0028272.1 mouse_genomes_project 4 150318965 150326045 - Park7 protein_coding retained_intron MGP_CASTEiJ_T0069566.1 MGP_CASTEiJ_G0028272.1 mouse_genomes_project 4 150321319 150326085 - MGP_CASTEiJ_P0069566 Park7 protein_coding protein_coding MGP_CASTEiJ_T0069567.1 MGP_CASTEiJ_G0028272.1 mouse_genomes_project 4 150321443 150330446 - MGP_CASTEiJ_P0069567 Park7 protein_coding protein_coding MGP_CASTEiJ_T0101073.1 MGP_CASTEiJ_G0037986.1 mouse_genomes_project 4 114828047 114828118 - Snord38a snoRNA snoRNA MGP_CASTEiJ_T0011249.1 MGP_CASTEiJ_G0009437.1 mouse_genomes_project 4 114371462 114371553 + Gm27688 misc_RNA misc_RNA MGP_CASTEiJ_T0065792.1 MGP_CASTEiJ_G0027455.1 mouse_genomes_project 4 55536076 55663109 - MGP_CASTEiJ_P0065792 Ptpn3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065793.1 MGP_CASTEiJ_G0027455.1 mouse_genomes_project 4 55547809 55630053 - MGP_CASTEiJ_P0065793 Ptpn3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065794.1 MGP_CASTEiJ_G0027455.1 mouse_genomes_project 4 55551216 55663113 - MGP_CASTEiJ_P0065794 Ptpn3 protein_coding protein_coding MGP_CASTEiJ_T0065795.1 MGP_CASTEiJ_G0027455.1 mouse_genomes_project 4 55576212 55579912 - Ptpn3 protein_coding processed_transcript MGP_CASTEiJ_T0065796.1 MGP_CASTEiJ_G0027455.1 mouse_genomes_project 4 55603095 55663170 - MGP_CASTEiJ_P0065796 Ptpn3 protein_coding protein_coding MGP_CASTEiJ_T0065797.1 MGP_CASTEiJ_G0027455.1 mouse_genomes_project 4 55612873 55663710 - Ptpn3 protein_coding processed_transcript MGP_CASTEiJ_T0065798.1 MGP_CASTEiJ_G0027455.1 mouse_genomes_project 4 55623039 55664285 - MGP_CASTEiJ_P0065798 Ptpn3 protein_coding protein_coding MGP_CASTEiJ_T0065799.1 MGP_CASTEiJ_G0027455.1 mouse_genomes_project 4 55627972 55663551 - MGP_CASTEiJ_P0065799 Ptpn3 protein_coding protein_coding MGP_CASTEiJ_T0064841.1 MGP_CASTEiJ_G0027252.1 mouse_genomes_project 4 21335682 21419954 + Mms22l protein_coding retained_intron MGP_CASTEiJ_T0064842.1 MGP_CASTEiJ_G0027252.1 mouse_genomes_project 4 21335682 21441701 + MGP_CASTEiJ_P0064842 Mms22l protein_coding protein_coding MGP_CASTEiJ_T0064843.1 MGP_CASTEiJ_G0027252.1 mouse_genomes_project 4 21335693 21342223 + MGP_CASTEiJ_P0064843 Mms22l protein_coding protein_coding MGP_CASTEiJ_T0064844.1 MGP_CASTEiJ_G0027252.1 mouse_genomes_project 4 21335696 21336278 + Mms22l protein_coding processed_transcript MGP_CASTEiJ_T0064845.1 MGP_CASTEiJ_G0027252.1 mouse_genomes_project 4 21335775 21441697 + MGP_CASTEiJ_P0064845 Mms22l protein_coding protein_coding MGP_CASTEiJ_T0064846.1 MGP_CASTEiJ_G0027252.1 mouse_genomes_project 4 21336110 21484188 + MGP_CASTEiJ_P0064846 Mms22l protein_coding unknown_likely_coding MGP_CASTEiJ_T0064847.1 MGP_CASTEiJ_G0027252.1 mouse_genomes_project 4 21336110 21484188 + MGP_CASTEiJ_P0064847 Mms22l protein_coding unknown_likely_coding MGP_CASTEiJ_T0064848.1 MGP_CASTEiJ_G0027252.1 mouse_genomes_project 4 21336110 21463348 + MGP_CASTEiJ_P0064848 Mms22l protein_coding unknown_likely_coding MGP_CASTEiJ_T0064849.1 MGP_CASTEiJ_G0027252.1 mouse_genomes_project 4 21337109 21368157 + MGP_CASTEiJ_P0064849 Mms22l protein_coding protein_coding MGP_CASTEiJ_T0064850.1 MGP_CASTEiJ_G0027252.1 mouse_genomes_project 4 21344001 21441700 + Mms22l protein_coding retained_intron MGP_CASTEiJ_T0064851.1 MGP_CASTEiJ_G0027252.1 mouse_genomes_project 4 21346320 21438755 + MGP_CASTEiJ_P0064851 Mms22l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064852.1 MGP_CASTEiJ_G0027252.1 mouse_genomes_project 4 21375374 21413538 + MGP_CASTEiJ_P0064852 Mms22l protein_coding protein_coding MGP_CASTEiJ_T0064853.1 MGP_CASTEiJ_G0027252.1 mouse_genomes_project 4 21417449 21429880 + Mms22l protein_coding processed_transcript MGP_CASTEiJ_T0004485.1 MGP_CASTEiJ_G0003897.1 mouse_genomes_project 4 155093973 155094756 + Gm27200 antisense antisense MGP_CASTEiJ_T0010324.1 MGP_CASTEiJ_G0008512.1 mouse_genomes_project 4 124770407 124770464 + Mir7119 miRNA miRNA MGP_CASTEiJ_T0014012.1 MGP_CASTEiJ_G0012175.1 mouse_genomes_project 4 25596882 25597146 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066965.1 MGP_CASTEiJ_G0027703.1 mouse_genomes_project 4 107501479 107533588 - MGP_CASTEiJ_P0066965 Rnf11 protein_coding protein_coding MGP_CASTEiJ_T0066966.1 MGP_CASTEiJ_G0027703.1 mouse_genomes_project 4 107503281 107533894 - MGP_CASTEiJ_P0066966 Rnf11 protein_coding protein_coding MGP_CASTEiJ_T0066967.1 MGP_CASTEiJ_G0027703.1 mouse_genomes_project 4 107504665 107541613 - MGP_CASTEiJ_P0066967 Rnf11 protein_coding protein_coding MGP_CASTEiJ_T0068943.1 MGP_CASTEiJ_G0028123.1 mouse_genomes_project 4 137382693 137397182 - MGP_CASTEiJ_P0068943 Pink1 protein_coding protein_coding MGP_CASTEiJ_T0068944.1 MGP_CASTEiJ_G0028123.1 mouse_genomes_project 4 137383649 137397203 - MGP_CASTEiJ_P0068944 Pink1 protein_coding protein_coding MGP_CASTEiJ_T0013941.1 MGP_CASTEiJ_G0012104.1 mouse_genomes_project 4 3070708 3071454 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064710.1 MGP_CASTEiJ_G0027216.1 mouse_genomes_project 4 8810641 8820990 + MGP_CASTEiJ_P0064710 protein_coding protein_coding MGP_CASTEiJ_T0064711.1 MGP_CASTEiJ_G0027216.1 mouse_genomes_project 4 8810643 8821080 + MGP_CASTEiJ_P0064711 protein_coding protein_coding MGP_CASTEiJ_T0064935.1 MGP_CASTEiJ_G0027268.1 mouse_genomes_project 4 30189901 30191594 + MGP_CASTEiJ_P0064935 protein_coding protein_coding MGP_CASTEiJ_T0066756.1 MGP_CASTEiJ_G0027670.1 mouse_genomes_project 4 105244308 105295864 + MGP_CASTEiJ_P0066756 Yipf1 protein_coding protein_coding MGP_CASTEiJ_T0066757.1 MGP_CASTEiJ_G0027670.1 mouse_genomes_project 4 105244314 105251397 + Yipf1 protein_coding processed_transcript MGP_CASTEiJ_T0066758.1 MGP_CASTEiJ_G0027670.1 mouse_genomes_project 4 105244329 105284855 + MGP_CASTEiJ_P0066758 Yipf1 protein_coding protein_coding MGP_CASTEiJ_T0066759.1 MGP_CASTEiJ_G0027670.1 mouse_genomes_project 4 105244357 105277704 + MGP_CASTEiJ_P0066759 Yipf1 protein_coding protein_coding MGP_CASTEiJ_T0066760.1 MGP_CASTEiJ_G0027670.1 mouse_genomes_project 4 105244382 105248974 + MGP_CASTEiJ_P0066760 Yipf1 protein_coding protein_coding MGP_CASTEiJ_T0066761.1 MGP_CASTEiJ_G0027670.1 mouse_genomes_project 4 105245076 105245786 + Yipf1 protein_coding processed_transcript MGP_CASTEiJ_T0066762.1 MGP_CASTEiJ_G0027670.1 mouse_genomes_project 4 105245711 105277316 + Yipf1 protein_coding processed_transcript MGP_CASTEiJ_T0066763.1 MGP_CASTEiJ_G0027670.1 mouse_genomes_project 4 105248928 105295865 + Yipf1 protein_coding processed_transcript MGP_CASTEiJ_T0066764.1 MGP_CASTEiJ_G0027670.1 mouse_genomes_project 4 105254634 105267317 + Yipf1 protein_coding processed_transcript MGP_CASTEiJ_T0066765.1 MGP_CASTEiJ_G0027670.1 mouse_genomes_project 4 105275750 105285958 + Yipf1 protein_coding processed_transcript MGP_CASTEiJ_T0066766.1 MGP_CASTEiJ_G0027670.1 mouse_genomes_project 4 105277191 105295864 + Yipf1 protein_coding processed_transcript MGP_CASTEiJ_T0066747.1 MGP_CASTEiJ_G0027669.1 mouse_genomes_project 4 105219391 105236222 - MGP_CASTEiJ_P0066747 Dio1 protein_coding protein_coding MGP_CASTEiJ_T0066748.1 MGP_CASTEiJ_G0027669.1 mouse_genomes_project 4 105220060 105236288 - MGP_CASTEiJ_P0066748 Dio1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066749.1 MGP_CASTEiJ_G0027669.1 mouse_genomes_project 4 105220093 105236195 - MGP_CASTEiJ_P0066749 Dio1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066750.1 MGP_CASTEiJ_G0027669.1 mouse_genomes_project 4 105220260 105236177 - MGP_CASTEiJ_P0066750 Dio1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066751.1 MGP_CASTEiJ_G0027669.1 mouse_genomes_project 4 105220264 105236177 - MGP_CASTEiJ_P0066751 Dio1 protein_coding protein_coding MGP_CASTEiJ_T0066752.1 MGP_CASTEiJ_G0027669.1 mouse_genomes_project 4 105220294 105236171 - MGP_CASTEiJ_P0066752 Dio1 protein_coding protein_coding MGP_CASTEiJ_T0066753.1 MGP_CASTEiJ_G0027669.1 mouse_genomes_project 4 105220294 105236171 - MGP_CASTEiJ_P0066753 Dio1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066754.1 MGP_CASTEiJ_G0027669.1 mouse_genomes_project 4 105220294 105236171 - MGP_CASTEiJ_P0066754 Dio1 protein_coding protein_coding MGP_CASTEiJ_T0066755.1 MGP_CASTEiJ_G0027669.1 mouse_genomes_project 4 105229017 105236119 - Dio1 protein_coding processed_transcript MGP_CASTEiJ_T0014105.1 MGP_CASTEiJ_G0012268.1 mouse_genomes_project 4 58021009 58021277 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007815.1 MGP_CASTEiJ_G0006394.1 mouse_genomes_project 4 139680016 139684965 + Gm13016 lincRNA lincRNA MGP_CASTEiJ_T0099768.1 MGP_CASTEiJ_G0036681.1 mouse_genomes_project 4 5767063 5767169 + Gm23423 snRNA snRNA MGP_CASTEiJ_T0069125.1 MGP_CASTEiJ_G0028170.1 mouse_genomes_project 4 140590481 140596355 + MGP_CASTEiJ_P0069125 Rsg1 protein_coding protein_coding MGP_CASTEiJ_T0069126.1 MGP_CASTEiJ_G0028170.1 mouse_genomes_project 4 140590970 140594886 + Rsg1 protein_coding processed_transcript MGP_CASTEiJ_T0069127.1 MGP_CASTEiJ_G0028170.1 mouse_genomes_project 4 140594857 140604376 + Rsg1 protein_coding processed_transcript MGP_CASTEiJ_T0017362.1 MGP_CASTEiJ_G0014896.1 mouse_genomes_project 4 132698189 132700217 + Gm13061 processed_transcript processed_transcript MGP_CASTEiJ_T0007659.1 MGP_CASTEiJ_G0006277.1 mouse_genomes_project 4 52884037 52914937 + Gm12478 lincRNA lincRNA MGP_CASTEiJ_T0067734.1 MGP_CASTEiJ_G0027881.1 mouse_genomes_project 4 122772939 122793133 + MGP_CASTEiJ_P0067734 Sf3a3 protein_coding protein_coding MGP_CASTEiJ_T0067735.1 MGP_CASTEiJ_G0027881.1 mouse_genomes_project 4 122773046 122776853 + Sf3a3 protein_coding processed_transcript MGP_CASTEiJ_T0067736.1 MGP_CASTEiJ_G0027881.1 mouse_genomes_project 4 122780561 122782233 + Sf3a3 protein_coding processed_transcript MGP_CASTEiJ_T0064708.1 MGP_CASTEiJ_G0027215.1 mouse_genomes_project 4 8810422 8810872 + protein_coding processed_transcript MGP_CASTEiJ_T0064709.1 MGP_CASTEiJ_G0027215.1 mouse_genomes_project 4 8810475 8820988 + MGP_CASTEiJ_P0064709 protein_coding protein_coding MGP_CASTEiJ_T0068251.1 MGP_CASTEiJ_G0027983.1 mouse_genomes_project 4 129164615 129202502 + MGP_CASTEiJ_P0068251 Sdc3 protein_coding protein_coding MGP_CASTEiJ_T0068252.1 MGP_CASTEiJ_G0027983.1 mouse_genomes_project 4 129164782 129193423 + Sdc3 protein_coding retained_intron MGP_CASTEiJ_T0068253.1 MGP_CASTEiJ_G0027983.1 mouse_genomes_project 4 129188121 129195211 + MGP_CASTEiJ_P0068253 Sdc3 protein_coding protein_coding MGP_CASTEiJ_T0068254.1 MGP_CASTEiJ_G0027983.1 mouse_genomes_project 4 129190454 129195211 + MGP_CASTEiJ_P0068254 Sdc3 protein_coding protein_coding MGP_CASTEiJ_T0068255.1 MGP_CASTEiJ_G0027983.1 mouse_genomes_project 4 129192994 129198434 + Sdc3 protein_coding retained_intron MGP_CASTEiJ_T0066466.1 MGP_CASTEiJ_G0027612.1 mouse_genomes_project 4 96702598 96710713 + MGP_CASTEiJ_P0066466 Angptl3 protein_coding protein_coding MGP_CASTEiJ_T0066467.1 MGP_CASTEiJ_G0027612.1 mouse_genomes_project 4 96705864 96710606 + Angptl3 protein_coding processed_transcript MGP_CASTEiJ_T0066468.1 MGP_CASTEiJ_G0027612.1 mouse_genomes_project 4 96705888 96718771 + Angptl3 protein_coding processed_transcript MGP_CASTEiJ_T0010291.1 MGP_CASTEiJ_G0008479.1 mouse_genomes_project 4 41330257 41330390 + Gm25262 miRNA miRNA MGP_CASTEiJ_T0010280.1 MGP_CASTEiJ_G0008468.1 mouse_genomes_project 4 7441653 7441761 + n-TSaga9 miRNA miRNA MGP_CASTEiJ_T0101069.1 MGP_CASTEiJ_G0037982.1 mouse_genomes_project 4 103956507 103956622 - Gm26047 snoRNA snoRNA MGP_CASTEiJ_T0067171.1 MGP_CASTEiJ_G0027754.1 mouse_genomes_project 4 113929943 114094865 - MGP_CASTEiJ_P0067171 Mast2 protein_coding protein_coding MGP_CASTEiJ_T0067172.1 MGP_CASTEiJ_G0027754.1 mouse_genomes_project 4 113929944 114095297 - MGP_CASTEiJ_P0067172 Mast2 protein_coding protein_coding MGP_CASTEiJ_T0067173.1 MGP_CASTEiJ_G0027754.1 mouse_genomes_project 4 113929944 114095297 - MGP_CASTEiJ_P0067173 Mast2 protein_coding protein_coding MGP_CASTEiJ_T0067174.1 MGP_CASTEiJ_G0027754.1 mouse_genomes_project 4 113929995 114095029 - MGP_CASTEiJ_P0067174 Mast2 protein_coding protein_coding MGP_CASTEiJ_T0067175.1 MGP_CASTEiJ_G0027754.1 mouse_genomes_project 4 113931188 113932386 - Mast2 protein_coding processed_transcript MGP_CASTEiJ_T0067176.1 MGP_CASTEiJ_G0027754.1 mouse_genomes_project 4 113932760 113933982 - Mast2 protein_coding processed_transcript MGP_CASTEiJ_T0067177.1 MGP_CASTEiJ_G0027754.1 mouse_genomes_project 4 113932792 113933829 - Mast2 protein_coding processed_transcript MGP_CASTEiJ_T0067178.1 MGP_CASTEiJ_G0027754.1 mouse_genomes_project 4 113935461 113939247 - Mast2 protein_coding processed_transcript MGP_CASTEiJ_T0067179.1 MGP_CASTEiJ_G0027754.1 mouse_genomes_project 4 113936023 113940932 - Mast2 protein_coding processed_transcript MGP_CASTEiJ_T0067180.1 MGP_CASTEiJ_G0027754.1 mouse_genomes_project 4 113940891 113950832 - Mast2 protein_coding processed_transcript MGP_CASTEiJ_T0067181.1 MGP_CASTEiJ_G0027754.1 mouse_genomes_project 4 113943020 113953622 - Mast2 protein_coding processed_transcript MGP_CASTEiJ_T0067182.1 MGP_CASTEiJ_G0027754.1 mouse_genomes_project 4 113945611 114034345 - MGP_CASTEiJ_P0067182 Mast2 protein_coding protein_coding MGP_CASTEiJ_T0067183.1 MGP_CASTEiJ_G0027754.1 mouse_genomes_project 4 113950652 114034361 - MGP_CASTEiJ_P0067183 Mast2 protein_coding protein_coding MGP_CASTEiJ_T0067184.1 MGP_CASTEiJ_G0027754.1 mouse_genomes_project 4 113955830 114035167 - Mast2 protein_coding processed_transcript MGP_CASTEiJ_T0067185.1 MGP_CASTEiJ_G0027754.1 mouse_genomes_project 4 113956119 114063232 - Mast2 protein_coding processed_transcript MGP_CASTEiJ_T0007709.1 MGP_CASTEiJ_G0006321.1 mouse_genomes_project 4 97368919 97371660 - lincRNA lincRNA MGP_CASTEiJ_T0066852.1 MGP_CASTEiJ_G0027683.1 mouse_genomes_project 4 106230497 106297321 - MGP_CASTEiJ_P0066852 Zyg11b protein_coding protein_coding MGP_CASTEiJ_T0066853.1 MGP_CASTEiJ_G0027683.1 mouse_genomes_project 4 106242232 106242899 - Zyg11b protein_coding processed_transcript MGP_CASTEiJ_T0066526.1 MGP_CASTEiJ_G0027627.1 mouse_genomes_project 4 99200712 99326676 + MGP_CASTEiJ_P0066526 Dnajc6 protein_coding protein_coding MGP_CASTEiJ_T0066527.1 MGP_CASTEiJ_G0027627.1 mouse_genomes_project 4 99211886 99362354 + MGP_CASTEiJ_P0066527 Dnajc6 protein_coding protein_coding MGP_CASTEiJ_T0066528.1 MGP_CASTEiJ_G0027627.1 mouse_genomes_project 4 99211991 99330643 + MGP_CASTEiJ_P0066528 Dnajc6 protein_coding protein_coding MGP_CASTEiJ_T0066529.1 MGP_CASTEiJ_G0027627.1 mouse_genomes_project 4 99212045 99320191 + Dnajc6 protein_coding processed_transcript MGP_CASTEiJ_T0066530.1 MGP_CASTEiJ_G0027627.1 mouse_genomes_project 4 99239329 99362362 + MGP_CASTEiJ_P0066530 Dnajc6 protein_coding protein_coding MGP_CASTEiJ_T0066531.1 MGP_CASTEiJ_G0027627.1 mouse_genomes_project 4 99257675 99362337 + MGP_CASTEiJ_P0066531 Dnajc6 protein_coding protein_coding MGP_CASTEiJ_T0068004.1 MGP_CASTEiJ_G0027940.1 mouse_genomes_project 4 127437125 127467801 + MGP_CASTEiJ_P0068004 Rnf19b protein_coding protein_coding MGP_CASTEiJ_T0068005.1 MGP_CASTEiJ_G0027940.1 mouse_genomes_project 4 127438748 127462671 + MGP_CASTEiJ_P0068005 Rnf19b protein_coding protein_coding MGP_CASTEiJ_T0068006.1 MGP_CASTEiJ_G0027940.1 mouse_genomes_project 4 127438770 127466594 + MGP_CASTEiJ_P0068006 Rnf19b protein_coding protein_coding MGP_CASTEiJ_T0068007.1 MGP_CASTEiJ_G0027940.1 mouse_genomes_project 4 127439080 127466598 + MGP_CASTEiJ_P0068007 Rnf19b protein_coding unknown_likely_coding MGP_CASTEiJ_T0068008.1 MGP_CASTEiJ_G0027940.1 mouse_genomes_project 4 127439106 127466594 + MGP_CASTEiJ_P0068008 Rnf19b protein_coding protein_coding MGP_CASTEiJ_T0068009.1 MGP_CASTEiJ_G0027940.1 mouse_genomes_project 4 127460984 127467952 + MGP_CASTEiJ_P0068009 Rnf19b protein_coding protein_coding MGP_CASTEiJ_T0068010.1 MGP_CASTEiJ_G0027940.1 mouse_genomes_project 4 127465952 127467952 + Rnf19b protein_coding processed_transcript MGP_CASTEiJ_T0014133.1 MGP_CASTEiJ_G0012296.1 mouse_genomes_project 4 72155902 72156103 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066075.1 MGP_CASTEiJ_G0027527.1 mouse_genomes_project 4 72349987 72350938 - MGP_CASTEiJ_P0066075 Tmem261 protein_coding protein_coding MGP_CASTEiJ_T0067817.1 MGP_CASTEiJ_G0027900.1 mouse_genomes_project 4 124273760 124311057 + MGP_CASTEiJ_P0067817 Stk40 protein_coding protein_coding MGP_CASTEiJ_T0067818.1 MGP_CASTEiJ_G0027900.1 mouse_genomes_project 4 124273775 124311058 + MGP_CASTEiJ_P0067818 Stk40 protein_coding protein_coding MGP_CASTEiJ_T0067819.1 MGP_CASTEiJ_G0027900.1 mouse_genomes_project 4 124273804 124294865 + MGP_CASTEiJ_P0067819 Stk40 protein_coding protein_coding MGP_CASTEiJ_T0067820.1 MGP_CASTEiJ_G0027900.1 mouse_genomes_project 4 124273838 124287512 + Stk40 protein_coding processed_transcript MGP_CASTEiJ_T0067821.1 MGP_CASTEiJ_G0027900.1 mouse_genomes_project 4 124288086 124299030 + MGP_CASTEiJ_P0067821 Stk40 protein_coding protein_coding MGP_CASTEiJ_T0067822.1 MGP_CASTEiJ_G0027900.1 mouse_genomes_project 4 124298880 124302856 + Stk40 protein_coding processed_transcript MGP_CASTEiJ_T0013948.1 MGP_CASTEiJ_G0012111.1 mouse_genomes_project 4 6628831 6629494 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066499.1 MGP_CASTEiJ_G0027621.1 mouse_genomes_project 4 98187432 98257964 + MGP_CASTEiJ_P0066499 Ube2u protein_coding protein_coding MGP_CASTEiJ_T0066500.1 MGP_CASTEiJ_G0027621.1 mouse_genomes_project 4 98187765 98191997 + MGP_CASTEiJ_P0066500 Ube2u protein_coding unknown_likely_coding MGP_CASTEiJ_T0066501.1 MGP_CASTEiJ_G0027621.1 mouse_genomes_project 4 98194016 98257974 + MGP_CASTEiJ_P0066501 Ube2u protein_coding protein_coding MGP_CASTEiJ_T0066767.1 MGP_CASTEiJ_G0027671.1 mouse_genomes_project 4 105303761 105355990 + MGP_CASTEiJ_P0066767 Ndc1 protein_coding protein_coding MGP_CASTEiJ_T0066768.1 MGP_CASTEiJ_G0027671.1 mouse_genomes_project 4 105303857 105353965 + MGP_CASTEiJ_P0066768 Ndc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066769.1 MGP_CASTEiJ_G0027671.1 mouse_genomes_project 4 105303892 105355967 + MGP_CASTEiJ_P0066769 Ndc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066770.1 MGP_CASTEiJ_G0027671.1 mouse_genomes_project 4 105304029 105350781 + MGP_CASTEiJ_P0066770 Ndc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066771.1 MGP_CASTEiJ_G0027671.1 mouse_genomes_project 4 105318652 105324031 + Ndc1 protein_coding processed_transcript MGP_CASTEiJ_T0066772.1 MGP_CASTEiJ_G0027671.1 mouse_genomes_project 4 105319029 105327652 + Ndc1 protein_coding retained_intron MGP_CASTEiJ_T0065917.1 MGP_CASTEiJ_G0027486.1 mouse_genomes_project 4 59252357 59270856 + MGP_CASTEiJ_P0065917 Prpf4 protein_coding protein_coding MGP_CASTEiJ_T0065918.1 MGP_CASTEiJ_G0027486.1 mouse_genomes_project 4 59265715 59267201 + Prpf4 protein_coding processed_transcript MGP_CASTEiJ_T0069887.1 MGP_CASTEiJ_G0028325.1 mouse_genomes_project 4 154995632 155004603 + Faap20 protein_coding processed_transcript MGP_CASTEiJ_T0069888.1 MGP_CASTEiJ_G0028325.1 mouse_genomes_project 4 154995691 154996776 + Faap20 protein_coding processed_transcript MGP_CASTEiJ_T0069889.1 MGP_CASTEiJ_G0028325.1 mouse_genomes_project 4 154995707 154996634 + Faap20 protein_coding processed_transcript MGP_CASTEiJ_T0069890.1 MGP_CASTEiJ_G0028325.1 mouse_genomes_project 4 154995727 155004647 + Faap20 protein_coding processed_transcript MGP_CASTEiJ_T0069891.1 MGP_CASTEiJ_G0028325.1 mouse_genomes_project 4 154995788 155004873 + MGP_CASTEiJ_P0069891 Faap20 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069892.1 MGP_CASTEiJ_G0028325.1 mouse_genomes_project 4 154995795 155004867 + MGP_CASTEiJ_P0069892 Faap20 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069893.1 MGP_CASTEiJ_G0028325.1 mouse_genomes_project 4 154995795 155004871 + MGP_CASTEiJ_P0069893 Faap20 protein_coding protein_coding MGP_CASTEiJ_T0069894.1 MGP_CASTEiJ_G0028325.1 mouse_genomes_project 4 154995818 155004567 + MGP_CASTEiJ_P0069894 Faap20 protein_coding protein_coding MGP_CASTEiJ_T0069895.1 MGP_CASTEiJ_G0028325.1 mouse_genomes_project 4 154995832 155004868 + MGP_CASTEiJ_P0069895 Faap20 protein_coding protein_coding MGP_CASTEiJ_T0069896.1 MGP_CASTEiJ_G0028325.1 mouse_genomes_project 4 154996149 155004602 + MGP_CASTEiJ_P0069896 Faap20 protein_coding protein_coding MGP_CASTEiJ_T0069897.1 MGP_CASTEiJ_G0028325.1 mouse_genomes_project 4 154996519 155004632 + Faap20 protein_coding retained_intron MGP_CASTEiJ_T0007676.1 MGP_CASTEiJ_G0006291.1 mouse_genomes_project 4 60568956 60575882 + Gm11482 lincRNA lincRNA MGP_CASTEiJ_T0017340.1 MGP_CASTEiJ_G0014888.1 mouse_genomes_project 4 117074053 117076452 + Gm12898 processed_transcript processed_transcript MGP_CASTEiJ_T0064805.1 MGP_CASTEiJ_G0027245.1 mouse_genomes_project 4 18563391 18576985 - MGP_CASTEiJ_P0064805 Tstd3 protein_coding protein_coding MGP_CASTEiJ_T0007633.1 MGP_CASTEiJ_G0006255.1 mouse_genomes_project 4 27764011 27915569 + 4930556G01Rik lincRNA lincRNA MGP_CASTEiJ_T0010359.1 MGP_CASTEiJ_G0008547.1 mouse_genomes_project 4 156025267 156025324 - Mir7658 miRNA miRNA MGP_CASTEiJ_T0014192.1 MGP_CASTEiJ_G0012355.1 mouse_genomes_project 4 95859434 95859952 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065178.1 MGP_CASTEiJ_G0027328.1 mouse_genomes_project 4 39453900 39457866 + MGP_CASTEiJ_P0065178 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065179.1 MGP_CASTEiJ_G0027328.1 mouse_genomes_project 4 39454959 39456954 + protein_coding retained_intron MGP_CASTEiJ_T0065180.1 MGP_CASTEiJ_G0027328.1 mouse_genomes_project 4 39454961 39457674 + protein_coding retained_intron MGP_CASTEiJ_T0067430.1 MGP_CASTEiJ_G0027798.1 mouse_genomes_project 4 116197583 116202047 - MGP_CASTEiJ_P0067430 Cdc20 protein_coding protein_coding MGP_CASTEiJ_T0067431.1 MGP_CASTEiJ_G0027798.1 mouse_genomes_project 4 116197787 116201273 - MGP_CASTEiJ_P0067431 Cdc20 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067432.1 MGP_CASTEiJ_G0027798.1 mouse_genomes_project 4 116198230 116200516 - Cdc20 protein_coding retained_intron MGP_CASTEiJ_T0068358.1 MGP_CASTEiJ_G0028001.1 mouse_genomes_project 4 131027680 131045930 - MGP_CASTEiJ_P0068358 Sesn2 protein_coding protein_coding MGP_CASTEiJ_T0004373.1 MGP_CASTEiJ_G0003809.1 mouse_genomes_project 4 105779625 105780196 - antisense antisense MGP_CASTEiJ_T0007833.1 MGP_CASTEiJ_G0006412.1 mouse_genomes_project 4 152749919 152751303 - Gm13173 lincRNA lincRNA MGP_CASTEiJ_T0007804.1 MGP_CASTEiJ_G0006384.1 mouse_genomes_project 4 135256250 135257842 - Gm27022 lincRNA lincRNA MGP_CASTEiJ_T0017294.1 MGP_CASTEiJ_G0014856.1 mouse_genomes_project 4 32272966 32278324 - Platr9 processed_transcript processed_transcript MGP_CASTEiJ_T0017295.1 MGP_CASTEiJ_G0014856.1 mouse_genomes_project 4 32276631 32278324 - Platr9 processed_transcript processed_transcript MGP_CASTEiJ_T0014202.1 MGP_CASTEiJ_G0012365.1 mouse_genomes_project 4 98269848 98270773 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014160.1 MGP_CASTEiJ_G0012323.1 mouse_genomes_project 4 82038337 82039385 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068107.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042044 128050682 + MGP_CASTEiJ_P0068107 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068108.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042044 128051260 + MGP_CASTEiJ_P0068108 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068109.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042045 128062789 + MGP_CASTEiJ_P0068109 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068110.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042057 128050671 + MGP_CASTEiJ_P0068110 protein_coding protein_coding MGP_CASTEiJ_T0068111.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042063 128050861 + MGP_CASTEiJ_P0068111 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068112.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042067 128050706 + MGP_CASTEiJ_P0068112 protein_coding protein_coding MGP_CASTEiJ_T0068113.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042067 128067057 + MGP_CASTEiJ_P0068113 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068114.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042067 128050941 + MGP_CASTEiJ_P0068114 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068115.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042071 128050950 + MGP_CASTEiJ_P0068115 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068116.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042076 128051664 + MGP_CASTEiJ_P0068116 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068117.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042077 128050286 + MGP_CASTEiJ_P0068117 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068118.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042078 128051002 + protein_coding retained_intron MGP_CASTEiJ_T0068119.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042079 128050303 + MGP_CASTEiJ_P0068119 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068120.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042080 128046122 + protein_coding processed_transcript MGP_CASTEiJ_T0068121.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042083 128042867 + MGP_CASTEiJ_P0068121 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068122.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042094 128051678 + MGP_CASTEiJ_P0068122 protein_coding protein_coding MGP_CASTEiJ_T0068123.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042359 128050817 + MGP_CASTEiJ_P0068123 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068124.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042359 128045354 + MGP_CASTEiJ_P0068124 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068125.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042464 128045162 + protein_coding retained_intron MGP_CASTEiJ_T0068126.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128042607 128045640 + protein_coding retained_intron MGP_CASTEiJ_T0068127.1 MGP_CASTEiJ_G0027959.1 mouse_genomes_project 4 128045434 128050454 + protein_coding retained_intron MGP_CASTEiJ_T0069287.1 MGP_CASTEiJ_G0028222.1 mouse_genomes_project 4 146959196 146968055 - MGP_CASTEiJ_P0069287 Miip protein_coding protein_coding MGP_CASTEiJ_T0069288.1 MGP_CASTEiJ_G0028222.1 mouse_genomes_project 4 146959204 146968152 - MGP_CASTEiJ_P0069288 Miip protein_coding protein_coding MGP_CASTEiJ_T0069289.1 MGP_CASTEiJ_G0028222.1 mouse_genomes_project 4 146959208 146961193 - Miip protein_coding retained_intron MGP_CASTEiJ_T0069290.1 MGP_CASTEiJ_G0028222.1 mouse_genomes_project 4 146959209 146967835 - Miip protein_coding retained_intron MGP_CASTEiJ_T0069291.1 MGP_CASTEiJ_G0028222.1 mouse_genomes_project 4 146959209 146967819 - MGP_CASTEiJ_P0069291 Miip protein_coding protein_coding MGP_CASTEiJ_T0069292.1 MGP_CASTEiJ_G0028222.1 mouse_genomes_project 4 146961230 146968002 - Miip protein_coding retained_intron MGP_CASTEiJ_T0069293.1 MGP_CASTEiJ_G0028222.1 mouse_genomes_project 4 146961986 146964906 - Miip protein_coding retained_intron MGP_CASTEiJ_T0069294.1 MGP_CASTEiJ_G0028222.1 mouse_genomes_project 4 146965493 146967859 - Miip protein_coding retained_intron MGP_CASTEiJ_T0068056.1 MGP_CASTEiJ_G0027947.1 mouse_genomes_project 4 127694975 127718601 + MGP_CASTEiJ_P0068056 Sync protein_coding protein_coding MGP_CASTEiJ_T0068057.1 MGP_CASTEiJ_G0027947.1 mouse_genomes_project 4 127694989 127717420 + Sync protein_coding retained_intron MGP_CASTEiJ_T0065058.1 MGP_CASTEiJ_G0027300.1 mouse_genomes_project 4 38302805 38304452 + Dnaja1 protein_coding processed_transcript MGP_CASTEiJ_T0065059.1 MGP_CASTEiJ_G0027300.1 mouse_genomes_project 4 38303214 38311934 + Dnaja1 protein_coding processed_transcript MGP_CASTEiJ_T0065060.1 MGP_CASTEiJ_G0027300.1 mouse_genomes_project 4 38303577 38318876 + MGP_CASTEiJ_P0065060 Dnaja1 protein_coding protein_coding MGP_CASTEiJ_T0065061.1 MGP_CASTEiJ_G0027300.1 mouse_genomes_project 4 38303585 38313500 + MGP_CASTEiJ_P0065061 Dnaja1 protein_coding protein_coding MGP_CASTEiJ_T0065062.1 MGP_CASTEiJ_G0027300.1 mouse_genomes_project 4 38303600 38309895 + MGP_CASTEiJ_P0065062 Dnaja1 protein_coding protein_coding MGP_CASTEiJ_T0065063.1 MGP_CASTEiJ_G0027300.1 mouse_genomes_project 4 38303772 38307895 + MGP_CASTEiJ_P0065063 Dnaja1 protein_coding protein_coding MGP_CASTEiJ_T0065064.1 MGP_CASTEiJ_G0027300.1 mouse_genomes_project 4 38304017 38305828 + Dnaja1 protein_coding processed_transcript MGP_CASTEiJ_T0065065.1 MGP_CASTEiJ_G0027300.1 mouse_genomes_project 4 38304705 38314004 + Dnaja1 protein_coding processed_transcript MGP_CASTEiJ_T0014094.1 MGP_CASTEiJ_G0012257.1 mouse_genomes_project 4 53642197 53650953 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065402.1 MGP_CASTEiJ_G0027362.1 mouse_genomes_project 4 41431927 41433386 + MGP_CASTEiJ_P0065402 Hrct1 protein_coding protein_coding MGP_CASTEiJ_T0064625.1 MGP_CASTEiJ_G0027197.1 mouse_genomes_project 4 6428151 6446027 + MGP_CASTEiJ_P0064625 Gdf6 protein_coding protein_coding MGP_CASTEiJ_T0064626.1 MGP_CASTEiJ_G0027197.1 mouse_genomes_project 4 6428225 6450267 + MGP_CASTEiJ_P0064626 Gdf6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0004454.1 MGP_CASTEiJ_G0003873.1 mouse_genomes_project 4 147120573 147123371 - Gm13054 antisense antisense MGP_CASTEiJ_T0007723.1 MGP_CASTEiJ_G0006332.1 mouse_genomes_project 4 104357821 104365348 - Tmem61 lincRNA lincRNA MGP_CASTEiJ_T0007724.1 MGP_CASTEiJ_G0006332.1 mouse_genomes_project 4 104358053 104362106 - Tmem61 lincRNA lincRNA MGP_CASTEiJ_T0098722.1 MGP_CASTEiJ_G0035653.1 mouse_genomes_project 4 41176140 41176411 - Rmrp ribozyme ribozyme MGP_CASTEiJ_T0014057.1 MGP_CASTEiJ_G0012220.1 mouse_genomes_project 4 42065414 42067566 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007713.1 MGP_CASTEiJ_G0006325.1 mouse_genomes_project 4 99054076 99063802 - E130102H24Rik lincRNA lincRNA MGP_CASTEiJ_T0007715.1 MGP_CASTEiJ_G0006325.1 mouse_genomes_project 4 99063595 99064289 - E130102H24Rik lincRNA lincRNA MGP_CASTEiJ_T0099806.1 MGP_CASTEiJ_G0036719.1 mouse_genomes_project 4 95957734 95957824 + Gm24960 snRNA snRNA MGP_CASTEiJ_T0067954.1 MGP_CASTEiJ_G0027929.1 mouse_genomes_project 4 126150211 126301075 - MGP_CASTEiJ_P0067954 CK137956 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067955.1 MGP_CASTEiJ_G0027929.1 mouse_genomes_project 4 126240309 126283545 - MGP_CASTEiJ_P0067955 CK137956 protein_coding protein_coding MGP_CASTEiJ_T0017335.1 MGP_CASTEiJ_G0014884.1 mouse_genomes_project 4 112591389 112603057 + Foxd2os processed_transcript processed_transcript MGP_CASTEiJ_T0017336.1 MGP_CASTEiJ_G0014884.1 mouse_genomes_project 4 112591389 112603696 + Foxd2os processed_transcript processed_transcript MGP_CASTEiJ_T0069116.1 MGP_CASTEiJ_G0028167.1 mouse_genomes_project 4 140458744 140484753 + MGP_CASTEiJ_P0069116 Spata21 protein_coding protein_coding MGP_CASTEiJ_T0069117.1 MGP_CASTEiJ_G0028167.1 mouse_genomes_project 4 140476026 140483536 + Spata21 protein_coding retained_intron MGP_CASTEiJ_T0069303.1 MGP_CASTEiJ_G0028225.1 mouse_genomes_project 4 147017474 147047870 - MGP_CASTEiJ_P0069303 Plod1 protein_coding protein_coding MGP_CASTEiJ_T0069304.1 MGP_CASTEiJ_G0028225.1 mouse_genomes_project 4 147025251 147030548 - MGP_CASTEiJ_P0069304 Plod1 protein_coding protein_coding MGP_CASTEiJ_T0069305.1 MGP_CASTEiJ_G0028225.1 mouse_genomes_project 4 147031851 147047845 - Plod1 protein_coding retained_intron MGP_CASTEiJ_T0069306.1 MGP_CASTEiJ_G0028225.1 mouse_genomes_project 4 147032231 147033125 - Plod1 protein_coding retained_intron MGP_CASTEiJ_T0069307.1 MGP_CASTEiJ_G0028225.1 mouse_genomes_project 4 147037063 147047828 - MGP_CASTEiJ_P0069307 Plod1 protein_coding protein_coding MGP_CASTEiJ_T0069308.1 MGP_CASTEiJ_G0028225.1 mouse_genomes_project 4 147041126 147047811 - Plod1 protein_coding processed_transcript MGP_CASTEiJ_T0065052.1 MGP_CASTEiJ_G0027299.1 mouse_genomes_project 4 38258689 38281795 - MGP_CASTEiJ_P0065052 Aptx protein_coding protein_coding MGP_CASTEiJ_T0065053.1 MGP_CASTEiJ_G0027299.1 mouse_genomes_project 4 38258689 38282075 - MGP_CASTEiJ_P0065053 Aptx protein_coding protein_coding MGP_CASTEiJ_T0065054.1 MGP_CASTEiJ_G0027299.1 mouse_genomes_project 4 38263219 38282043 - MGP_CASTEiJ_P0065054 Aptx protein_coding protein_coding MGP_CASTEiJ_T0065055.1 MGP_CASTEiJ_G0027299.1 mouse_genomes_project 4 38264096 38282068 - MGP_CASTEiJ_P0065055 Aptx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065056.1 MGP_CASTEiJ_G0027299.1 mouse_genomes_project 4 38270152 38273423 - Aptx protein_coding processed_transcript MGP_CASTEiJ_T0065057.1 MGP_CASTEiJ_G0027299.1 mouse_genomes_project 4 38273935 38281597 - MGP_CASTEiJ_P0065057 Aptx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068092.1 MGP_CASTEiJ_G0027956.1 mouse_genomes_project 4 127982133 127993431 - MGP_CASTEiJ_P0068092 Lck protein_coding protein_coding MGP_CASTEiJ_T0068093.1 MGP_CASTEiJ_G0027956.1 mouse_genomes_project 4 127982138 127993450 - MGP_CASTEiJ_P0068093 Lck protein_coding protein_coding MGP_CASTEiJ_T0068094.1 MGP_CASTEiJ_G0027956.1 mouse_genomes_project 4 127982138 128011048 - MGP_CASTEiJ_P0068094 Lck protein_coding protein_coding MGP_CASTEiJ_T0068095.1 MGP_CASTEiJ_G0027956.1 mouse_genomes_project 4 127982684 127990918 - Lck protein_coding retained_intron MGP_CASTEiJ_T0068096.1 MGP_CASTEiJ_G0027956.1 mouse_genomes_project 4 127985822 127991301 - Lck protein_coding retained_intron MGP_CASTEiJ_T0068097.1 MGP_CASTEiJ_G0027956.1 mouse_genomes_project 4 127990545 127991531 - Lck protein_coding retained_intron MGP_CASTEiJ_T0068098.1 MGP_CASTEiJ_G0027956.1 mouse_genomes_project 4 127991919 127993146 - Lck protein_coding retained_intron MGP_CASTEiJ_T0068099.1 MGP_CASTEiJ_G0027956.1 mouse_genomes_project 4 127992423 127993431 - MGP_CASTEiJ_P0068099 Lck protein_coding protein_coding MGP_CASTEiJ_T0068433.1 MGP_CASTEiJ_G0028017.1 mouse_genomes_project 4 131823970 131833392 + Cd164l2 protein_coding processed_transcript MGP_CASTEiJ_T0068434.1 MGP_CASTEiJ_G0028017.1 mouse_genomes_project 4 131832435 131836165 + MGP_CASTEiJ_P0068434 Cd164l2 protein_coding protein_coding MGP_CASTEiJ_T0068435.1 MGP_CASTEiJ_G0028017.1 mouse_genomes_project 4 131833069 131836165 + Cd164l2 protein_coding processed_transcript MGP_CASTEiJ_T0068436.1 MGP_CASTEiJ_G0028017.1 mouse_genomes_project 4 131833155 131835852 + Cd164l2 protein_coding retained_intron MGP_CASTEiJ_T0013962.1 MGP_CASTEiJ_G0012125.1 mouse_genomes_project 4 11838590 11838916 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067400.1 MGP_CASTEiJ_G0027793.1 mouse_genomes_project 4 115886879 115933086 - MGP_CASTEiJ_P0067400 Kdm4a protein_coding protein_coding MGP_CASTEiJ_T0067401.1 MGP_CASTEiJ_G0027793.1 mouse_genomes_project 4 115886881 115932697 - MGP_CASTEiJ_P0067401 Kdm4a protein_coding protein_coding MGP_CASTEiJ_T0067402.1 MGP_CASTEiJ_G0027793.1 mouse_genomes_project 4 115886928 115933021 - MGP_CASTEiJ_P0067402 Kdm4a protein_coding protein_coding MGP_CASTEiJ_T0067403.1 MGP_CASTEiJ_G0027793.1 mouse_genomes_project 4 115891961 115932989 - MGP_CASTEiJ_P0067403 Kdm4a protein_coding protein_coding MGP_CASTEiJ_T0067404.1 MGP_CASTEiJ_G0027793.1 mouse_genomes_project 4 115895715 115896691 - Kdm4a protein_coding processed_transcript MGP_CASTEiJ_T0067405.1 MGP_CASTEiJ_G0027793.1 mouse_genomes_project 4 115898982 115911594 - Kdm4a protein_coding processed_transcript MGP_CASTEiJ_T0069196.1 MGP_CASTEiJ_G0028185.1 mouse_genomes_project 4 141119231 141120980 - MGP_CASTEiJ_P0069196 protein_coding protein_coding MGP_CASTEiJ_T0101098.1 MGP_CASTEiJ_G0038011.1 mouse_genomes_project 4 142743127 142743259 + Gm22039 snoRNA snoRNA MGP_CASTEiJ_T0007762.1 MGP_CASTEiJ_G0006357.1 mouse_genomes_project 4 125810257 125811517 + 1700080G11Rik lincRNA lincRNA MGP_CASTEiJ_T0067100.1 MGP_CASTEiJ_G0027740.1 mouse_genomes_project 4 113416227 113461495 + MGP_CASTEiJ_P0067100 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067101.1 MGP_CASTEiJ_G0027740.1 mouse_genomes_project 4 113416256 113462561 + protein_coding processed_transcript MGP_CASTEiJ_T0067102.1 MGP_CASTEiJ_G0027740.1 mouse_genomes_project 4 113416279 113447912 + MGP_CASTEiJ_P0067102 protein_coding protein_coding MGP_CASTEiJ_T0067103.1 MGP_CASTEiJ_G0027740.1 mouse_genomes_project 4 113416281 113457171 + protein_coding processed_transcript MGP_CASTEiJ_T0067104.1 MGP_CASTEiJ_G0027740.1 mouse_genomes_project 4 113416285 113461568 + MGP_CASTEiJ_P0067104 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067105.1 MGP_CASTEiJ_G0027740.1 mouse_genomes_project 4 113416291 113431699 + protein_coding processed_transcript MGP_CASTEiJ_T0067106.1 MGP_CASTEiJ_G0027740.1 mouse_genomes_project 4 113416293 113449879 + MGP_CASTEiJ_P0067106 protein_coding protein_coding MGP_CASTEiJ_T0067107.1 MGP_CASTEiJ_G0027740.1 mouse_genomes_project 4 113416298 113447949 + MGP_CASTEiJ_P0067107 protein_coding protein_coding MGP_CASTEiJ_T0067108.1 MGP_CASTEiJ_G0027740.1 mouse_genomes_project 4 113416302 113440465 + MGP_CASTEiJ_P0067108 protein_coding protein_coding MGP_CASTEiJ_T0067109.1 MGP_CASTEiJ_G0027740.1 mouse_genomes_project 4 113416318 113446608 + protein_coding processed_transcript MGP_CASTEiJ_T0067110.1 MGP_CASTEiJ_G0027740.1 mouse_genomes_project 4 113440399 113461975 + protein_coding processed_transcript MGP_CASTEiJ_T0067111.1 MGP_CASTEiJ_G0027740.1 mouse_genomes_project 4 113440473 113459916 + protein_coding processed_transcript MGP_CASTEiJ_T0067112.1 MGP_CASTEiJ_G0027740.1 mouse_genomes_project 4 113449613 113450674 + protein_coding processed_transcript MGP_CASTEiJ_T0067113.1 MGP_CASTEiJ_G0027740.1 mouse_genomes_project 4 113458071 113460358 + protein_coding processed_transcript MGP_CASTEiJ_T0065715.1 MGP_CASTEiJ_G0027437.1 mouse_genomes_project 4 51217996 51347536 - MGP_CASTEiJ_P0065715 Abca1 protein_coding protein_coding MGP_CASTEiJ_T0065716.1 MGP_CASTEiJ_G0027437.1 mouse_genomes_project 4 51222687 51228275 - Abca1 protein_coding processed_transcript MGP_CASTEiJ_T0101053.1 MGP_CASTEiJ_G0037966.1 mouse_genomes_project 4 70029436 70029569 - Gm25653 snoRNA snoRNA MGP_CASTEiJ_T0099786.1 MGP_CASTEiJ_G0036699.1 mouse_genomes_project 4 40863066 40863131 - Gm25010 snRNA snRNA MGP_CASTEiJ_T0068494.1 MGP_CASTEiJ_G0028033.1 mouse_genomes_project 4 132325978 132348915 - MGP_CASTEiJ_P0068494 Arid1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0068495.1 MGP_CASTEiJ_G0028033.1 mouse_genomes_project 4 132334112 132413287 - MGP_CASTEiJ_P0068495 Arid1a protein_coding protein_coding MGP_CASTEiJ_T0068496.1 MGP_CASTEiJ_G0028033.1 mouse_genomes_project 4 132334112 132413287 - MGP_CASTEiJ_P0068496 Arid1a protein_coding protein_coding MGP_CASTEiJ_T0068497.1 MGP_CASTEiJ_G0028033.1 mouse_genomes_project 4 132335045 132418063 - MGP_CASTEiJ_P0068497 Arid1a protein_coding protein_coding MGP_CASTEiJ_T0068498.1 MGP_CASTEiJ_G0028033.1 mouse_genomes_project 4 132344565 132378109 - Arid1a protein_coding retained_intron MGP_CASTEiJ_T0068499.1 MGP_CASTEiJ_G0028033.1 mouse_genomes_project 4 132374417 132375831 - Arid1a protein_coding retained_intron MGP_CASTEiJ_T0068500.1 MGP_CASTEiJ_G0028033.1 mouse_genomes_project 4 132375833 132378936 - MGP_CASTEiJ_P0068500 Arid1a protein_coding protein_coding MGP_CASTEiJ_T0064632.1 MGP_CASTEiJ_G0027199.1 mouse_genomes_project 4 7569473 7593273 - MGP_CASTEiJ_P0064632 Plekhf2 protein_coding protein_coding MGP_CASTEiJ_T0064633.1 MGP_CASTEiJ_G0027199.1 mouse_genomes_project 4 7571664 7593524 - MGP_CASTEiJ_P0064633 Plekhf2 protein_coding protein_coding MGP_CASTEiJ_T0007648.1 MGP_CASTEiJ_G0006269.1 mouse_genomes_project 4 43569368 43570623 + Gm12410 lincRNA lincRNA MGP_CASTEiJ_T0068706.1 MGP_CASTEiJ_G0028073.1 mouse_genomes_project 4 134266517 134312620 - MGP_CASTEiJ_P0068706 Nipal3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068707.1 MGP_CASTEiJ_G0028073.1 mouse_genomes_project 4 134267234 134312620 - MGP_CASTEiJ_P0068707 Nipal3 protein_coding protein_coding MGP_CASTEiJ_T0068708.1 MGP_CASTEiJ_G0028073.1 mouse_genomes_project 4 134269777 134312737 - MGP_CASTEiJ_P0068708 Nipal3 protein_coding protein_coding MGP_CASTEiJ_T0068709.1 MGP_CASTEiJ_G0028073.1 mouse_genomes_project 4 134272772 134288505 - MGP_CASTEiJ_P0068709 Nipal3 protein_coding protein_coding MGP_CASTEiJ_T0068710.1 MGP_CASTEiJ_G0028073.1 mouse_genomes_project 4 134273063 134275961 - Nipal3 protein_coding processed_transcript MGP_CASTEiJ_T0068711.1 MGP_CASTEiJ_G0028073.1 mouse_genomes_project 4 134273153 134276233 - Nipal3 protein_coding processed_transcript MGP_CASTEiJ_T0068712.1 MGP_CASTEiJ_G0028073.1 mouse_genomes_project 4 134293704 134313083 - MGP_CASTEiJ_P0068712 Nipal3 protein_coding protein_coding MGP_CASTEiJ_T0068713.1 MGP_CASTEiJ_G0028073.1 mouse_genomes_project 4 134296829 134313152 - MGP_CASTEiJ_P0068713 Nipal3 protein_coding protein_coding MGP_CASTEiJ_T0069868.1 MGP_CASTEiJ_G0028321.1 mouse_genomes_project 4 154796230 154801636 + MGP_CASTEiJ_P0069868 Pex10 protein_coding protein_coding MGP_CASTEiJ_T0069869.1 MGP_CASTEiJ_G0028321.1 mouse_genomes_project 4 154796268 154798090 + Pex10 protein_coding processed_transcript MGP_CASTEiJ_T0069870.1 MGP_CASTEiJ_G0028321.1 mouse_genomes_project 4 154796271 154801384 + Pex10 protein_coding processed_transcript MGP_CASTEiJ_T0069871.1 MGP_CASTEiJ_G0028321.1 mouse_genomes_project 4 154796273 154798325 + Pex10 protein_coding processed_transcript MGP_CASTEiJ_T0069872.1 MGP_CASTEiJ_G0028321.1 mouse_genomes_project 4 154796273 154797236 + Pex10 protein_coding processed_transcript MGP_CASTEiJ_T0069873.1 MGP_CASTEiJ_G0028321.1 mouse_genomes_project 4 154796398 154801068 + MGP_CASTEiJ_P0069873 Pex10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014000.1 MGP_CASTEiJ_G0012163.1 mouse_genomes_project 4 23259206 23259934 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014258.1 MGP_CASTEiJ_G0012421.1 mouse_genomes_project 4 117368912 117369589 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011230.1 MGP_CASTEiJ_G0009418.1 mouse_genomes_project 4 32023036 32023343 + Gm22849 misc_RNA misc_RNA MGP_CASTEiJ_T0064898.1 MGP_CASTEiJ_G0027262.1 mouse_genomes_project 4 29423635 29789551 + MGP_CASTEiJ_P0064898 Bach2 protein_coding protein_coding MGP_CASTEiJ_T0064899.1 MGP_CASTEiJ_G0027262.1 mouse_genomes_project 4 29423781 29784657 + MGP_CASTEiJ_P0064899 Bach2 protein_coding protein_coding MGP_CASTEiJ_T0064900.1 MGP_CASTEiJ_G0027262.1 mouse_genomes_project 4 29423908 29700542 + Bach2 protein_coding processed_transcript MGP_CASTEiJ_T0064901.1 MGP_CASTEiJ_G0027262.1 mouse_genomes_project 4 29432590 29502920 + Bach2 protein_coding processed_transcript MGP_CASTEiJ_T0064902.1 MGP_CASTEiJ_G0027262.1 mouse_genomes_project 4 29610109 29789555 + MGP_CASTEiJ_P0064902 Bach2 protein_coding protein_coding MGP_CASTEiJ_T0064903.1 MGP_CASTEiJ_G0027262.1 mouse_genomes_project 4 29700405 29701532 + Bach2 protein_coding processed_transcript MGP_CASTEiJ_T0064904.1 MGP_CASTEiJ_G0027262.1 mouse_genomes_project 4 29778578 29783296 + Bach2 protein_coding processed_transcript MGP_CASTEiJ_T0010315.1 MGP_CASTEiJ_G0008503.1 mouse_genomes_project 4 115961350 115961410 - Mir7226 miRNA miRNA MGP_CASTEiJ_T0102334.1 MGP_CASTEiJ_G0039059.1 mouse_genomes_project 4 142963851 142964921 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0066322.1 MGP_CASTEiJ_G0027581.1 mouse_genomes_project 4 90944972 90946348 - MGP_CASTEiJ_P0066322 Tusc1 protein_coding protein_coding MGP_CASTEiJ_T0065148.1 MGP_CASTEiJ_G0027322.1 mouse_genomes_project 4 39393405 39394907 - MGP_CASTEiJ_P0065148 Rpp25l protein_coding protein_coding MGP_CASTEiJ_T0067665.1 MGP_CASTEiJ_G0027860.1 mouse_genomes_project 4 120908073 120950832 + Trit1 protein_coding processed_transcript MGP_CASTEiJ_T0067666.1 MGP_CASTEiJ_G0027860.1 mouse_genomes_project 4 120908073 120950832 + MGP_CASTEiJ_P0067666 Trit1 protein_coding protein_coding MGP_CASTEiJ_T0067667.1 MGP_CASTEiJ_G0027860.1 mouse_genomes_project 4 120944635 120950083 + Trit1 protein_coding processed_transcript MGP_CASTEiJ_T0014215.1 MGP_CASTEiJ_G0012378.1 mouse_genomes_project 4 103331135 103331586 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068398.1 MGP_CASTEiJ_G0028010.1 mouse_genomes_project 4 131379979 131396101 - MGP_CASTEiJ_P0068398 Ppp1r8 protein_coding protein_coding MGP_CASTEiJ_T0068399.1 MGP_CASTEiJ_G0028010.1 mouse_genomes_project 4 131380876 131396055 - MGP_CASTEiJ_P0068399 Ppp1r8 protein_coding protein_coding MGP_CASTEiJ_T0068400.1 MGP_CASTEiJ_G0028010.1 mouse_genomes_project 4 131382041 131385872 - Ppp1r8 protein_coding processed_transcript MGP_CASTEiJ_T0068401.1 MGP_CASTEiJ_G0028010.1 mouse_genomes_project 4 131383459 131396056 - Ppp1r8 protein_coding processed_transcript MGP_CASTEiJ_T0068402.1 MGP_CASTEiJ_G0028010.1 mouse_genomes_project 4 131387591 131396066 - Ppp1r8 protein_coding processed_transcript MGP_CASTEiJ_T0065335.1 MGP_CASTEiJ_G0027349.1 mouse_genomes_project 4 41199833 41210430 - MGP_CASTEiJ_P0065335 Tpm2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065336.1 MGP_CASTEiJ_G0027349.1 mouse_genomes_project 4 41199840 41210285 - Tpm2 protein_coding processed_transcript MGP_CASTEiJ_T0065337.1 MGP_CASTEiJ_G0027349.1 mouse_genomes_project 4 41199840 41210311 - MGP_CASTEiJ_P0065337 Tpm2 protein_coding protein_coding MGP_CASTEiJ_T0065338.1 MGP_CASTEiJ_G0027349.1 mouse_genomes_project 4 41199841 41210235 - MGP_CASTEiJ_P0065338 Tpm2 protein_coding protein_coding MGP_CASTEiJ_T0065339.1 MGP_CASTEiJ_G0027349.1 mouse_genomes_project 4 41200811 41206530 - Tpm2 protein_coding processed_transcript MGP_CASTEiJ_T0065340.1 MGP_CASTEiJ_G0027349.1 mouse_genomes_project 4 41206528 41210612 - MGP_CASTEiJ_P0065340 Tpm2 protein_coding protein_coding MGP_CASTEiJ_T0014004.1 MGP_CASTEiJ_G0012167.1 mouse_genomes_project 4 24073345 24073615 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014093.1 MGP_CASTEiJ_G0012256.1 mouse_genomes_project 4 53528854 53529097 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101019.1 MGP_CASTEiJ_G0037932.1 mouse_genomes_project 4 4385126 4385258 + Gm23860 snoRNA snoRNA MGP_CASTEiJ_T0068237.1 MGP_CASTEiJ_G0027980.1 mouse_genomes_project 4 128888012 128916522 + MGP_CASTEiJ_P0068237 Snrnp40 protein_coding protein_coding MGP_CASTEiJ_T0068238.1 MGP_CASTEiJ_G0027980.1 mouse_genomes_project 4 128888074 128901787 + Snrnp40 protein_coding processed_transcript MGP_CASTEiJ_T0068239.1 MGP_CASTEiJ_G0027980.1 mouse_genomes_project 4 128890494 128893293 + Snrnp40 protein_coding processed_transcript MGP_CASTEiJ_T0068240.1 MGP_CASTEiJ_G0027980.1 mouse_genomes_project 4 128911541 128915103 + Snrnp40 protein_coding processed_transcript MGP_CASTEiJ_T0004407.1 MGP_CASTEiJ_G0003837.1 mouse_genomes_project 4 126453696 126488180 - Csmd2os antisense antisense MGP_CASTEiJ_T0004408.1 MGP_CASTEiJ_G0003837.1 mouse_genomes_project 4 126453696 126491062 - Csmd2os antisense antisense MGP_CASTEiJ_T0010303.1 MGP_CASTEiJ_G0008491.1 mouse_genomes_project 4 85593593 85593679 + Mir491 miRNA miRNA MGP_CASTEiJ_T0007780.1 MGP_CASTEiJ_G0006371.1 mouse_genomes_project 4 129403313 129408433 - A930031H19Rik lincRNA lincRNA MGP_CASTEiJ_T0007781.1 MGP_CASTEiJ_G0006371.1 mouse_genomes_project 4 129403313 129414185 - A930031H19Rik lincRNA lincRNA MGP_CASTEiJ_T0011240.1 MGP_CASTEiJ_G0009428.1 mouse_genomes_project 4 75925434 75925520 + Gm22262 misc_RNA misc_RNA MGP_CASTEiJ_T0014189.1 MGP_CASTEiJ_G0012352.1 mouse_genomes_project 4 93698768 93699047 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068807.1 MGP_CASTEiJ_G0028096.1 mouse_genomes_project 4 135381630 135383342 + MGP_CASTEiJ_P0068807 protein_coding protein_coding MGP_CASTEiJ_T0001371.1 MGP_CASTEiJ_G0001301.1 mouse_genomes_project 4 135580251 135582712 + TEC TEC MGP_CASTEiJ_T0065480.1 MGP_CASTEiJ_G0027375.1 mouse_genomes_project 4 42790070 42800433 + MGP_CASTEiJ_P0065480 Grhpr protein_coding unknown_likely_coding MGP_CASTEiJ_T0065481.1 MGP_CASTEiJ_G0027375.1 mouse_genomes_project 4 42790086 42799402 + MGP_CASTEiJ_P0065481 Grhpr protein_coding protein_coding MGP_CASTEiJ_T0065482.1 MGP_CASTEiJ_G0027375.1 mouse_genomes_project 4 42790094 42792631 + MGP_CASTEiJ_P0065482 Grhpr protein_coding protein_coding MGP_CASTEiJ_T0065483.1 MGP_CASTEiJ_G0027375.1 mouse_genomes_project 4 42790123 42797690 + MGP_CASTEiJ_P0065483 Grhpr protein_coding protein_coding MGP_CASTEiJ_T0065484.1 MGP_CASTEiJ_G0027375.1 mouse_genomes_project 4 42790124 42796021 + Grhpr protein_coding processed_transcript MGP_CASTEiJ_T0065485.1 MGP_CASTEiJ_G0027375.1 mouse_genomes_project 4 42790152 42795942 + MGP_CASTEiJ_P0065485 Grhpr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065486.1 MGP_CASTEiJ_G0027375.1 mouse_genomes_project 4 42790191 42795070 + Grhpr protein_coding processed_transcript MGP_CASTEiJ_T0064518.1 MGP_CASTEiJ_G0027176.1 mouse_genomes_project 4 155865 322651 + MGP_CASTEiJ_P0064518 Lyn protein_coding protein_coding MGP_CASTEiJ_T0064519.1 MGP_CASTEiJ_G0027176.1 mouse_genomes_project 4 155877 322650 + MGP_CASTEiJ_P0064519 Lyn protein_coding protein_coding MGP_CASTEiJ_T0064520.1 MGP_CASTEiJ_G0027176.1 mouse_genomes_project 4 155880 248610 + Lyn protein_coding processed_transcript MGP_CASTEiJ_T0066661.1 MGP_CASTEiJ_G0027656.1 mouse_genomes_project 4 104534391 104551414 - MGP_CASTEiJ_P0066661 Ttc4 protein_coding protein_coding MGP_CASTEiJ_T0066662.1 MGP_CASTEiJ_G0027656.1 mouse_genomes_project 4 104534395 104551156 - Ttc4 protein_coding processed_transcript MGP_CASTEiJ_T0066663.1 MGP_CASTEiJ_G0027656.1 mouse_genomes_project 4 104534567 104539720 - Ttc4 protein_coding processed_transcript MGP_CASTEiJ_T0066664.1 MGP_CASTEiJ_G0027656.1 mouse_genomes_project 4 104535200 104551336 - MGP_CASTEiJ_P0066664 Ttc4 protein_coding protein_coding MGP_CASTEiJ_T0066665.1 MGP_CASTEiJ_G0027656.1 mouse_genomes_project 4 104539816 104543831 - Ttc4 protein_coding processed_transcript MGP_CASTEiJ_T0066666.1 MGP_CASTEiJ_G0027656.1 mouse_genomes_project 4 104540319 104543178 - Ttc4 protein_coding processed_transcript MGP_CASTEiJ_T0066667.1 MGP_CASTEiJ_G0027656.1 mouse_genomes_project 4 104542611 104551361 - MGP_CASTEiJ_P0066667 Ttc4 protein_coding protein_coding MGP_CASTEiJ_T0066668.1 MGP_CASTEiJ_G0027656.1 mouse_genomes_project 4 104543885 104551371 - Ttc4 protein_coding processed_transcript MGP_CASTEiJ_T0066669.1 MGP_CASTEiJ_G0027656.1 mouse_genomes_project 4 104548429 104551359 - Ttc4 protein_coding processed_transcript MGP_CASTEiJ_T0014106.1 MGP_CASTEiJ_G0012269.1 mouse_genomes_project 4 58628334 58649332 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068340.1 MGP_CASTEiJ_G0027998.1 mouse_genomes_project 4 130840612 130855920 - MGP_CASTEiJ_P0068340 Rcc1 protein_coding protein_coding MGP_CASTEiJ_T0068341.1 MGP_CASTEiJ_G0027998.1 mouse_genomes_project 4 130840616 130855878 - MGP_CASTEiJ_P0068341 Rcc1 protein_coding protein_coding MGP_CASTEiJ_T0068342.1 MGP_CASTEiJ_G0027998.1 mouse_genomes_project 4 130840616 130865167 - MGP_CASTEiJ_P0068342 Rcc1 protein_coding protein_coding MGP_CASTEiJ_T0068343.1 MGP_CASTEiJ_G0027998.1 mouse_genomes_project 4 130847865 130850143 - Rcc1 protein_coding processed_transcript MGP_CASTEiJ_T0068344.1 MGP_CASTEiJ_G0027998.1 mouse_genomes_project 4 130848032 130867131 - MGP_CASTEiJ_P0068344 Rcc1 protein_coding protein_coding MGP_CASTEiJ_T0068345.1 MGP_CASTEiJ_G0027998.1 mouse_genomes_project 4 130848924 130855874 - Rcc1 protein_coding retained_intron MGP_CASTEiJ_T0068346.1 MGP_CASTEiJ_G0027998.1 mouse_genomes_project 4 130849170 130855530 - Rcc1 protein_coding retained_intron MGP_CASTEiJ_T0068347.1 MGP_CASTEiJ_G0027998.1 mouse_genomes_project 4 130849702 130855865 - Rcc1 protein_coding retained_intron MGP_CASTEiJ_T0102306.1 MGP_CASTEiJ_G0039031.1 mouse_genomes_project 4 60243394 60246826 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0067086.1 MGP_CASTEiJ_G0027737.1 mouse_genomes_project 4 113312966 113333825 + Efcab14 protein_coding processed_transcript MGP_CASTEiJ_T0067087.1 MGP_CASTEiJ_G0027737.1 mouse_genomes_project 4 113312966 113349413 + MGP_CASTEiJ_P0067087 Efcab14 protein_coding protein_coding MGP_CASTEiJ_T0067088.1 MGP_CASTEiJ_G0027737.1 mouse_genomes_project 4 113312967 113329338 + Efcab14 protein_coding processed_transcript MGP_CASTEiJ_T0067089.1 MGP_CASTEiJ_G0027737.1 mouse_genomes_project 4 113313260 113357665 + MGP_CASTEiJ_P0067089 Efcab14 protein_coding protein_coding MGP_CASTEiJ_T0067090.1 MGP_CASTEiJ_G0027737.1 mouse_genomes_project 4 113313630 113354442 + MGP_CASTEiJ_P0067090 Efcab14 protein_coding protein_coding MGP_CASTEiJ_T0067091.1 MGP_CASTEiJ_G0027737.1 mouse_genomes_project 4 113313815 113355488 + MGP_CASTEiJ_P0067091 Efcab14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067092.1 MGP_CASTEiJ_G0027737.1 mouse_genomes_project 4 113313815 113357670 + MGP_CASTEiJ_P0067092 Efcab14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067093.1 MGP_CASTEiJ_G0027737.1 mouse_genomes_project 4 113343184 113355552 + Efcab14 protein_coding processed_transcript MGP_CASTEiJ_T0007680.1 MGP_CASTEiJ_G0006295.1 mouse_genomes_project 4 65298314 65307598 - Gm12911 lincRNA lincRNA MGP_CASTEiJ_T0007658.1 MGP_CASTEiJ_G0006276.1 mouse_genomes_project 4 52883307 52883775 - Gm29067 lincRNA lincRNA MGP_CASTEiJ_T0068195.1 MGP_CASTEiJ_G0027970.1 mouse_genomes_project 4 128541981 128604242 + MGP_CASTEiJ_P0068195 Col16a1 protein_coding protein_coding MGP_CASTEiJ_T0068196.1 MGP_CASTEiJ_G0027970.1 mouse_genomes_project 4 128542016 128543897 + MGP_CASTEiJ_P0068196 Col16a1 protein_coding protein_coding MGP_CASTEiJ_T0068197.1 MGP_CASTEiJ_G0027970.1 mouse_genomes_project 4 128542026 128595024 + Col16a1 protein_coding processed_transcript MGP_CASTEiJ_T0068198.1 MGP_CASTEiJ_G0027970.1 mouse_genomes_project 4 128542050 128578972 + Col16a1 protein_coding processed_transcript MGP_CASTEiJ_T0068199.1 MGP_CASTEiJ_G0027970.1 mouse_genomes_project 4 128542086 128545989 + MGP_CASTEiJ_P0068199 Col16a1 protein_coding protein_coding MGP_CASTEiJ_T0068200.1 MGP_CASTEiJ_G0027970.1 mouse_genomes_project 4 128542103 128604248 + MGP_CASTEiJ_P0068200 Col16a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068201.1 MGP_CASTEiJ_G0027970.1 mouse_genomes_project 4 128549128 128552701 + MGP_CASTEiJ_P0068201 Col16a1 protein_coding protein_coding MGP_CASTEiJ_T0068202.1 MGP_CASTEiJ_G0027970.1 mouse_genomes_project 4 128549173 128550143 + Col16a1 protein_coding retained_intron MGP_CASTEiJ_T0068203.1 MGP_CASTEiJ_G0027970.1 mouse_genomes_project 4 128550105 128604242 + MGP_CASTEiJ_P0068203 Col16a1 protein_coding protein_coding MGP_CASTEiJ_T0068204.1 MGP_CASTEiJ_G0027970.1 mouse_genomes_project 4 128563859 128580076 + Col16a1 protein_coding processed_transcript MGP_CASTEiJ_T0068205.1 MGP_CASTEiJ_G0027970.1 mouse_genomes_project 4 128575702 128578779 + Col16a1 protein_coding processed_transcript MGP_CASTEiJ_T0068206.1 MGP_CASTEiJ_G0027970.1 mouse_genomes_project 4 128577667 128579191 + Col16a1 protein_coding processed_transcript MGP_CASTEiJ_T0068207.1 MGP_CASTEiJ_G0027970.1 mouse_genomes_project 4 128602574 128604241 + Col16a1 protein_coding processed_transcript MGP_CASTEiJ_T0069281.1 MGP_CASTEiJ_G0028219.1 mouse_genomes_project 4 144802349 144835753 - MGP_CASTEiJ_P0069281 Tnfrsf1b protein_coding protein_coding MGP_CASTEiJ_T0069282.1 MGP_CASTEiJ_G0028219.1 mouse_genomes_project 4 144814261 144835753 - MGP_CASTEiJ_P0069282 Tnfrsf1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067846.1 MGP_CASTEiJ_G0027904.1 mouse_genomes_project 4 124413013 124423404 - MGP_CASTEiJ_P0067846 Map7d1 protein_coding protein_coding MGP_CASTEiJ_T0067847.1 MGP_CASTEiJ_G0027904.1 mouse_genomes_project 4 124413013 124441406 - MGP_CASTEiJ_P0067847 Map7d1 protein_coding protein_coding MGP_CASTEiJ_T0067848.1 MGP_CASTEiJ_G0027904.1 mouse_genomes_project 4 124413013 124441472 - MGP_CASTEiJ_P0067848 Map7d1 protein_coding protein_coding MGP_CASTEiJ_T0067849.1 MGP_CASTEiJ_G0027904.1 mouse_genomes_project 4 124413013 124441412 - MGP_CASTEiJ_P0067849 Map7d1 protein_coding protein_coding MGP_CASTEiJ_T0067850.1 MGP_CASTEiJ_G0027904.1 mouse_genomes_project 4 124413804 124414390 - Map7d1 protein_coding retained_intron MGP_CASTEiJ_T0067851.1 MGP_CASTEiJ_G0027904.1 mouse_genomes_project 4 124414461 124415618 - Map7d1 protein_coding retained_intron MGP_CASTEiJ_T0065763.1 MGP_CASTEiJ_G0027450.1 mouse_genomes_project 4 55130215 55132496 + Fam206a protein_coding retained_intron MGP_CASTEiJ_T0065764.1 MGP_CASTEiJ_G0027450.1 mouse_genomes_project 4 55130219 55137487 + MGP_CASTEiJ_P0065764 Fam206a protein_coding protein_coding MGP_CASTEiJ_T0065765.1 MGP_CASTEiJ_G0027450.1 mouse_genomes_project 4 55130222 55137487 + MGP_CASTEiJ_P0065765 Fam206a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065766.1 MGP_CASTEiJ_G0027450.1 mouse_genomes_project 4 55130488 55133817 + MGP_CASTEiJ_P0065766 Fam206a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0007681.1 MGP_CASTEiJ_G0006296.1 mouse_genomes_project 4 68149439 68210529 - Gm11228 lincRNA lincRNA MGP_CASTEiJ_T0065174.1 MGP_CASTEiJ_G0027327.1 mouse_genomes_project 4 39443567 39457526 + protein_coding retained_intron MGP_CASTEiJ_T0065175.1 MGP_CASTEiJ_G0027327.1 mouse_genomes_project 4 39443581 39455409 + protein_coding retained_intron MGP_CASTEiJ_T0065176.1 MGP_CASTEiJ_G0027327.1 mouse_genomes_project 4 39445464 39457674 + protein_coding retained_intron MGP_CASTEiJ_T0065177.1 MGP_CASTEiJ_G0027327.1 mouse_genomes_project 4 39452389 39452924 + protein_coding retained_intron MGP_CASTEiJ_T0099818.1 MGP_CASTEiJ_G0036731.1 mouse_genomes_project 4 114316809 114316916 + Gm25137 snRNA snRNA MGP_CASTEiJ_T0004438.1 MGP_CASTEiJ_G0003862.1 mouse_genomes_project 4 140487653 140490067 + 4921514A10Rik antisense antisense MGP_CASTEiJ_T0069717.1 MGP_CASTEiJ_G0028297.1 mouse_genomes_project 4 151942033 152001081 - MGP_CASTEiJ_P0069717 Kcnab2 protein_coding protein_coding MGP_CASTEiJ_T0069718.1 MGP_CASTEiJ_G0028297.1 mouse_genomes_project 4 151942035 152031649 - MGP_CASTEiJ_P0069718 Kcnab2 protein_coding protein_coding MGP_CASTEiJ_T0069719.1 MGP_CASTEiJ_G0028297.1 mouse_genomes_project 4 151942036 152031303 - MGP_CASTEiJ_P0069719 Kcnab2 protein_coding protein_coding MGP_CASTEiJ_T0069720.1 MGP_CASTEiJ_G0028297.1 mouse_genomes_project 4 151944024 152031211 - MGP_CASTEiJ_P0069720 Kcnab2 protein_coding protein_coding MGP_CASTEiJ_T0069721.1 MGP_CASTEiJ_G0028297.1 mouse_genomes_project 4 151944085 152001081 - MGP_CASTEiJ_P0069721 Kcnab2 protein_coding protein_coding MGP_CASTEiJ_T0069722.1 MGP_CASTEiJ_G0028297.1 mouse_genomes_project 4 151946303 151973941 - Kcnab2 protein_coding processed_transcript MGP_CASTEiJ_T0069723.1 MGP_CASTEiJ_G0028297.1 mouse_genomes_project 4 151952089 151981816 - Kcnab2 protein_coding processed_transcript MGP_CASTEiJ_T0069724.1 MGP_CASTEiJ_G0028297.1 mouse_genomes_project 4 151953005 152007311 - MGP_CASTEiJ_P0069724 Kcnab2 protein_coding protein_coding MGP_CASTEiJ_T0069725.1 MGP_CASTEiJ_G0028297.1 mouse_genomes_project 4 151954294 152000982 - Kcnab2 protein_coding processed_transcript MGP_CASTEiJ_T0069726.1 MGP_CASTEiJ_G0028297.1 mouse_genomes_project 4 151963080 152031322 - Kcnab2 protein_coding retained_intron MGP_CASTEiJ_T0069727.1 MGP_CASTEiJ_G0028297.1 mouse_genomes_project 4 151963234 151977035 - Kcnab2 protein_coding processed_transcript MGP_CASTEiJ_T0069728.1 MGP_CASTEiJ_G0028297.1 mouse_genomes_project 4 151964059 151969631 - Kcnab2 protein_coding processed_transcript MGP_CASTEiJ_T0069729.1 MGP_CASTEiJ_G0028297.1 mouse_genomes_project 4 151977604 152000982 - Kcnab2 protein_coding processed_transcript MGP_CASTEiJ_T0069730.1 MGP_CASTEiJ_G0028297.1 mouse_genomes_project 4 151986066 152031273 - MGP_CASTEiJ_P0069730 Kcnab2 protein_coding protein_coding MGP_CASTEiJ_T0013945.1 MGP_CASTEiJ_G0012108.1 mouse_genomes_project 4 4976239 4976572 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067950.1 MGP_CASTEiJ_G0027925.1 mouse_genomes_project 4 125580173 125582796 - MGP_CASTEiJ_P0067950 Gja4 protein_coding protein_coding MGP_CASTEiJ_T0066198.1 MGP_CASTEiJ_G0027544.1 mouse_genomes_project 4 82238679 82502320 + MGP_CASTEiJ_P0066198 Cntln protein_coding protein_coding MGP_CASTEiJ_T0066199.1 MGP_CASTEiJ_G0027544.1 mouse_genomes_project 4 82238774 82312930 + MGP_CASTEiJ_P0066199 Cntln protein_coding protein_coding MGP_CASTEiJ_T0066200.1 MGP_CASTEiJ_G0027544.1 mouse_genomes_project 4 82238835 82502316 + MGP_CASTEiJ_P0066200 Cntln protein_coding protein_coding MGP_CASTEiJ_T0066201.1 MGP_CASTEiJ_G0027544.1 mouse_genomes_project 4 82465981 82502317 + MGP_CASTEiJ_P0066201 Cntln protein_coding protein_coding MGP_CASTEiJ_T0069351.1 MGP_CASTEiJ_G0028236.1 mouse_genomes_project 4 147302239 147309264 + MGP_CASTEiJ_P0069351 Fbxo2 protein_coding protein_coding MGP_CASTEiJ_T0068545.1 MGP_CASTEiJ_G0028040.1 mouse_genomes_project 4 132771272 132783655 - Cd52 protein_coding processed_transcript MGP_CASTEiJ_T0068548.1 MGP_CASTEiJ_G0028040.1 mouse_genomes_project 4 132782145 132788645 - MGP_CASTEiJ_P0068548 Cd52 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068549.1 MGP_CASTEiJ_G0028040.1 mouse_genomes_project 4 132782149 132783696 - MGP_CASTEiJ_P0068549 Cd52 protein_coding protein_coding MGP_CASTEiJ_T0068550.1 MGP_CASTEiJ_G0028040.1 mouse_genomes_project 4 132782689 132783652 - Cd52 protein_coding processed_transcript MGP_CASTEiJ_T0065712.1 MGP_CASTEiJ_G0027436.1 mouse_genomes_project 4 51198791 51216733 + MGP_CASTEiJ_P0065712 Nipsnap3b protein_coding unknown_likely_coding MGP_CASTEiJ_T0065713.1 MGP_CASTEiJ_G0027436.1 mouse_genomes_project 4 51198795 51208739 + MGP_CASTEiJ_P0065713 Nipsnap3b protein_coding protein_coding MGP_CASTEiJ_T0065714.1 MGP_CASTEiJ_G0027436.1 mouse_genomes_project 4 51208138 51208668 + Nipsnap3b protein_coding processed_transcript MGP_CASTEiJ_T0066069.1 MGP_CASTEiJ_G0027526.1 mouse_genomes_project 4 71379184 71563262 + MGP_CASTEiJ_P0066069 Kdm4c protein_coding protein_coding MGP_CASTEiJ_T0066070.1 MGP_CASTEiJ_G0027526.1 mouse_genomes_project 4 71388416 71563262 + MGP_CASTEiJ_P0066070 Kdm4c protein_coding protein_coding MGP_CASTEiJ_T0066071.1 MGP_CASTEiJ_G0027526.1 mouse_genomes_project 4 71400309 71477747 + Kdm4c protein_coding processed_transcript MGP_CASTEiJ_T0066072.1 MGP_CASTEiJ_G0027526.1 mouse_genomes_project 4 71400309 71481499 + MGP_CASTEiJ_P0066072 Kdm4c protein_coding protein_coding MGP_CASTEiJ_T0066073.1 MGP_CASTEiJ_G0027526.1 mouse_genomes_project 4 71400310 71411054 + Kdm4c protein_coding processed_transcript MGP_CASTEiJ_T0066074.1 MGP_CASTEiJ_G0027526.1 mouse_genomes_project 4 71400310 71407094 + Kdm4c protein_coding processed_transcript MGP_CASTEiJ_T0014214.1 MGP_CASTEiJ_G0012377.1 mouse_genomes_project 4 103196104 103196597 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014087.1 MGP_CASTEiJ_G0012250.1 mouse_genomes_project 4 52458439 52458646 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007620.1 MGP_CASTEiJ_G0006243.1 mouse_genomes_project 4 13206396 13259914 + Gm11861 lincRNA lincRNA MGP_CASTEiJ_T0067496.1 MGP_CASTEiJ_G0027822.1 mouse_genomes_project 4 117084566 117101542 + MGP_CASTEiJ_P0067496 P3h1 protein_coding protein_coding MGP_CASTEiJ_T0067497.1 MGP_CASTEiJ_G0027822.1 mouse_genomes_project 4 117084590 117101545 + MGP_CASTEiJ_P0067497 P3h1 protein_coding protein_coding MGP_CASTEiJ_T0067498.1 MGP_CASTEiJ_G0027822.1 mouse_genomes_project 4 117084597 117100938 + P3h1 protein_coding processed_transcript MGP_CASTEiJ_T0067499.1 MGP_CASTEiJ_G0027822.1 mouse_genomes_project 4 117084597 117101542 + MGP_CASTEiJ_P0067499 P3h1 protein_coding protein_coding MGP_CASTEiJ_T0067500.1 MGP_CASTEiJ_G0027822.1 mouse_genomes_project 4 117084605 117100940 + MGP_CASTEiJ_P0067500 P3h1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067501.1 MGP_CASTEiJ_G0027822.1 mouse_genomes_project 4 117084676 117100946 + MGP_CASTEiJ_P0067501 P3h1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067502.1 MGP_CASTEiJ_G0027822.1 mouse_genomes_project 4 117085451 117089502 + P3h1 protein_coding processed_transcript MGP_CASTEiJ_T0067503.1 MGP_CASTEiJ_G0027822.1 mouse_genomes_project 4 117085483 117101543 + MGP_CASTEiJ_P0067503 P3h1 protein_coding protein_coding MGP_CASTEiJ_T0067504.1 MGP_CASTEiJ_G0027822.1 mouse_genomes_project 4 117086994 117094082 + P3h1 protein_coding processed_transcript MGP_CASTEiJ_T0067505.1 MGP_CASTEiJ_G0027822.1 mouse_genomes_project 4 117090528 117096747 + P3h1 protein_coding processed_transcript MGP_CASTEiJ_T0067506.1 MGP_CASTEiJ_G0027822.1 mouse_genomes_project 4 117097605 117100704 + P3h1 protein_coding processed_transcript MGP_CASTEiJ_T0067507.1 MGP_CASTEiJ_G0027822.1 mouse_genomes_project 4 117099209 117100943 + P3h1 protein_coding processed_transcript MGP_CASTEiJ_T0067508.1 MGP_CASTEiJ_G0027822.1 mouse_genomes_project 4 117099432 117100625 + P3h1 protein_coding retained_intron MGP_CASTEiJ_T0007747.1 MGP_CASTEiJ_G0006351.1 mouse_genomes_project 4 122357848 122364044 - 4933435F18Rik lincRNA lincRNA MGP_CASTEiJ_T0007748.1 MGP_CASTEiJ_G0006351.1 mouse_genomes_project 4 122362941 122364003 - 4933435F18Rik lincRNA lincRNA MGP_CASTEiJ_T0064936.1 MGP_CASTEiJ_G0027269.1 mouse_genomes_project 4 30212417 30254977 + MGP_CASTEiJ_P0064936 Rragd protein_coding protein_coding MGP_CASTEiJ_T0064937.1 MGP_CASTEiJ_G0027269.1 mouse_genomes_project 4 30212535 30254977 + MGP_CASTEiJ_P0064937 Rragd protein_coding protein_coding MGP_CASTEiJ_T0064938.1 MGP_CASTEiJ_G0027269.1 mouse_genomes_project 4 30212832 30254977 + MGP_CASTEiJ_P0064938 Rragd protein_coding protein_coding MGP_CASTEiJ_T0064939.1 MGP_CASTEiJ_G0027269.1 mouse_genomes_project 4 30237071 30251615 + Rragd protein_coding processed_transcript MGP_CASTEiJ_T0004424.1 MGP_CASTEiJ_G0003850.1 mouse_genomes_project 4 134106588 134108768 + Gm12984 antisense antisense MGP_CASTEiJ_T0099812.1 MGP_CASTEiJ_G0036725.1 mouse_genomes_project 4 106477598 106477705 - Gm24967 snRNA snRNA MGP_CASTEiJ_T0098761.1 MGP_CASTEiJ_G0035692.1 mouse_genomes_project 4 83994553 83994684 - Scarna8 scaRNA scaRNA MGP_CASTEiJ_T0099836.1 MGP_CASTEiJ_G0036749.1 mouse_genomes_project 4 131086616 131086720 - Gm24762 snRNA snRNA MGP_CASTEiJ_T0014230.1 MGP_CASTEiJ_G0012393.1 mouse_genomes_project 4 107680694 107681838 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101085.1 MGP_CASTEiJ_G0037998.1 mouse_genomes_project 4 129134559 129134642 + Gm24091 snoRNA snoRNA MGP_CASTEiJ_T0065855.1 MGP_CASTEiJ_G0027468.1 mouse_genomes_project 4 57415280 57436949 - MGP_CASTEiJ_P0065855 Ptgr1 protein_coding protein_coding MGP_CASTEiJ_T0067197.1 MGP_CASTEiJ_G0027758.1 mouse_genomes_project 4 114234422 114237971 + Ccdc17 protein_coding processed_transcript MGP_CASTEiJ_T0067198.1 MGP_CASTEiJ_G0027758.1 mouse_genomes_project 4 114234496 114238036 + MGP_CASTEiJ_P0067198 Ccdc17 protein_coding protein_coding MGP_CASTEiJ_T0067199.1 MGP_CASTEiJ_G0027758.1 mouse_genomes_project 4 114234569 114235970 + Ccdc17 protein_coding processed_transcript MGP_CASTEiJ_T0067200.1 MGP_CASTEiJ_G0027758.1 mouse_genomes_project 4 114235529 114237992 + Ccdc17 protein_coding processed_transcript MGP_CASTEiJ_T0067201.1 MGP_CASTEiJ_G0027758.1 mouse_genomes_project 4 114236261 114236934 + Ccdc17 protein_coding processed_transcript MGP_CASTEiJ_T0014225.1 MGP_CASTEiJ_G0012388.1 mouse_genomes_project 4 106459320 106459856 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065136.1 MGP_CASTEiJ_G0027319.1 mouse_genomes_project 4 39225766 39296921 + MGP_CASTEiJ_P0065136 Dnaic1 protein_coding protein_coding MGP_CASTEiJ_T0065137.1 MGP_CASTEiJ_G0027319.1 mouse_genomes_project 4 39225766 39296798 + MGP_CASTEiJ_P0065137 Dnaic1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065138.1 MGP_CASTEiJ_G0027319.1 mouse_genomes_project 4 39290406 39296921 + Dnaic1 protein_coding retained_intron MGP_CASTEiJ_T0065139.1 MGP_CASTEiJ_G0027319.1 mouse_genomes_project 4 39292110 39296921 + MGP_CASTEiJ_P0065139 Dnaic1 protein_coding protein_coding MGP_CASTEiJ_T0069262.1 MGP_CASTEiJ_G0028213.1 mouse_genomes_project 4 144223512 144233179 - MGP_CASTEiJ_P0069262 Gm13177 protein_coding protein_coding MGP_CASTEiJ_T0004427.1 MGP_CASTEiJ_G0003853.1 mouse_genomes_project 4 136415580 136430306 - antisense antisense MGP_CASTEiJ_T0014285.1 MGP_CASTEiJ_G0012448.1 mouse_genomes_project 4 124795045 124795344 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069355.1 MGP_CASTEiJ_G0028238.1 mouse_genomes_project 4 147606615 147617549 - MGP_CASTEiJ_P0069355 Ubiad1 protein_coding protein_coding MGP_CASTEiJ_T0069356.1 MGP_CASTEiJ_G0028238.1 mouse_genomes_project 4 147608609 147617539 - Ubiad1 protein_coding processed_transcript MGP_CASTEiJ_T0007621.1 MGP_CASTEiJ_G0006244.1 mouse_genomes_project 4 16549551 16553511 - Gm12354 lincRNA lincRNA MGP_CASTEiJ_T0007622.1 MGP_CASTEiJ_G0006244.1 mouse_genomes_project 4 16549551 16553198 - Gm12354 lincRNA lincRNA MGP_CASTEiJ_T0014287.1 MGP_CASTEiJ_G0012450.1 mouse_genomes_project 4 125221239 125221404 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069261.1 MGP_CASTEiJ_G0028212.1 mouse_genomes_project 4 144157858 144167907 - MGP_CASTEiJ_P0069261 protein_coding protein_coding MGP_CASTEiJ_T0101035.1 MGP_CASTEiJ_G0037948.1 mouse_genomes_project 4 40782959 40783089 - Gm23709 snoRNA snoRNA MGP_CASTEiJ_T0007668.1 MGP_CASTEiJ_G0006285.1 mouse_genomes_project 4 55730514 55733902 - 1700042G15Rik lincRNA lincRNA MGP_CASTEiJ_T0007669.1 MGP_CASTEiJ_G0006285.1 mouse_genomes_project 4 55730838 55733921 - 1700042G15Rik lincRNA lincRNA MGP_CASTEiJ_T0007670.1 MGP_CASTEiJ_G0006285.1 mouse_genomes_project 4 55730940 55733881 - 1700042G15Rik lincRNA lincRNA MGP_CASTEiJ_T0065747.1 MGP_CASTEiJ_G0027444.1 mouse_genomes_project 4 53606335 53653042 + MGP_CASTEiJ_P0065747 Rad23b protein_coding protein_coding MGP_CASTEiJ_T0065748.1 MGP_CASTEiJ_G0027444.1 mouse_genomes_project 4 53606342 53625999 + Rad23b protein_coding processed_transcript MGP_CASTEiJ_T0065749.1 MGP_CASTEiJ_G0027444.1 mouse_genomes_project 4 53606344 53607477 + Rad23b protein_coding processed_transcript MGP_CASTEiJ_T0065750.1 MGP_CASTEiJ_G0027444.1 mouse_genomes_project 4 53606382 53639880 + Rad23b protein_coding processed_transcript MGP_CASTEiJ_T0070101.1 MGP_CASTEiJ_G0028360.1 mouse_genomes_project 4 155910297 155927753 + MGP_CASTEiJ_P0070101 9430015G10Rik protein_coding protein_coding MGP_CASTEiJ_T0070102.1 MGP_CASTEiJ_G0028360.1 mouse_genomes_project 4 155910300 155927753 + 9430015G10Rik protein_coding processed_transcript MGP_CASTEiJ_T0070103.1 MGP_CASTEiJ_G0028360.1 mouse_genomes_project 4 155910313 155927751 + MGP_CASTEiJ_P0070103 9430015G10Rik protein_coding protein_coding MGP_CASTEiJ_T0070104.1 MGP_CASTEiJ_G0028360.1 mouse_genomes_project 4 155910314 155926710 + MGP_CASTEiJ_P0070104 9430015G10Rik protein_coding protein_coding MGP_CASTEiJ_T0070105.1 MGP_CASTEiJ_G0028360.1 mouse_genomes_project 4 155910334 155922683 + 9430015G10Rik protein_coding processed_transcript MGP_CASTEiJ_T0070106.1 MGP_CASTEiJ_G0028360.1 mouse_genomes_project 4 155910345 155922917 + 9430015G10Rik protein_coding processed_transcript MGP_CASTEiJ_T0070107.1 MGP_CASTEiJ_G0028360.1 mouse_genomes_project 4 155910354 155917115 + 9430015G10Rik protein_coding processed_transcript MGP_CASTEiJ_T0070108.1 MGP_CASTEiJ_G0028360.1 mouse_genomes_project 4 155914620 155920032 + 9430015G10Rik protein_coding processed_transcript MGP_CASTEiJ_T0065140.1 MGP_CASTEiJ_G0027320.1 mouse_genomes_project 4 39296906 39299087 - MGP_CASTEiJ_P0065140 Enho protein_coding protein_coding MGP_CASTEiJ_T0014046.1 MGP_CASTEiJ_G0012209.1 mouse_genomes_project 4 37407407 37408326 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067426.1 MGP_CASTEiJ_G0027797.1 mouse_genomes_project 4 116192709 116197303 + MGP_CASTEiJ_P0067426 Elovl1 protein_coding protein_coding MGP_CASTEiJ_T0067427.1 MGP_CASTEiJ_G0027797.1 mouse_genomes_project 4 116192813 116193514 + Elovl1 protein_coding processed_transcript MGP_CASTEiJ_T0067428.1 MGP_CASTEiJ_G0027797.1 mouse_genomes_project 4 116192857 116196630 + Elovl1 protein_coding processed_transcript MGP_CASTEiJ_T0067429.1 MGP_CASTEiJ_G0027797.1 mouse_genomes_project 4 116192891 116195758 + Elovl1 protein_coding processed_transcript MGP_CASTEiJ_T0066032.1 MGP_CASTEiJ_G0027516.1 mouse_genomes_project 4 62625700 63240702 - MGP_CASTEiJ_P0066032 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0066033.1 MGP_CASTEiJ_G0027516.1 mouse_genomes_project 4 62625700 63240702 - MGP_CASTEiJ_P0066033 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0014098.1 MGP_CASTEiJ_G0012261.1 mouse_genomes_project 4 54712782 54713561 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014006.1 MGP_CASTEiJ_G0012169.1 mouse_genomes_project 4 24942646 24942969 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014260.1 MGP_CASTEiJ_G0012423.1 mouse_genomes_project 4 117388140 117389083 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014154.1 MGP_CASTEiJ_G0012317.1 mouse_genomes_project 4 78998201 78998911 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004411.1 MGP_CASTEiJ_G0003840.1 mouse_genomes_project 4 127914763 127938598 - Gm12979 antisense antisense MGP_CASTEiJ_T0014171.1 MGP_CASTEiJ_G0012334.1 mouse_genomes_project 4 87920802 87921794 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013933.1 MGP_CASTEiJ_G0012096.1 mouse_genomes_project 4 554727 555227 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013996.1 MGP_CASTEiJ_G0012159.1 mouse_genomes_project 4 22269662 22271788 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068987.1 MGP_CASTEiJ_G0028139.1 mouse_genomes_project 4 138218842 138235098 - MGP_CASTEiJ_P0068987 Htr6 protein_coding protein_coding MGP_CASTEiJ_T0068988.1 MGP_CASTEiJ_G0028139.1 mouse_genomes_project 4 138219143 138234317 - MGP_CASTEiJ_P0068988 Htr6 protein_coding protein_coding MGP_CASTEiJ_T0069264.1 MGP_CASTEiJ_G0028215.1 mouse_genomes_project 4 144299487 144321033 - MGP_CASTEiJ_P0069264 Gm13178 protein_coding protein_coding MGP_CASTEiJ_T0101092.1 MGP_CASTEiJ_G0038005.1 mouse_genomes_project 4 130817565 130817695 + Snora61 snoRNA snoRNA MGP_CASTEiJ_T0014339.1 MGP_CASTEiJ_G0012502.1 mouse_genomes_project 4 153717062 153717168 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001354.1 MGP_CASTEiJ_G0001284.1 mouse_genomes_project 4 9245316 9328808 + TEC TEC MGP_CASTEiJ_T0065706.1 MGP_CASTEiJ_G0027434.1 mouse_genomes_project 4 51153635 51154580 + MGP_CASTEiJ_P0065706 Olfr270 protein_coding protein_coding MGP_CASTEiJ_T0065707.1 MGP_CASTEiJ_G0027434.1 mouse_genomes_project 4 51153641 51154580 + MGP_CASTEiJ_P0065707 Olfr270 protein_coding protein_coding MGP_CASTEiJ_T0065405.1 MGP_CASTEiJ_G0027365.1 mouse_genomes_project 4 41570932 41574645 + MGP_CASTEiJ_P0065405 Olfr155 protein_coding protein_coding MGP_CASTEiJ_T0065406.1 MGP_CASTEiJ_G0027365.1 mouse_genomes_project 4 41573666 41574838 + MGP_CASTEiJ_P0065406 Olfr155 protein_coding protein_coding MGP_CASTEiJ_T0017329.1 MGP_CASTEiJ_G0014881.1 mouse_genomes_project 4 106607472 106637441 - Gm12743 processed_transcript processed_transcript MGP_CASTEiJ_T0065312.1 MGP_CASTEiJ_G0027346.1 mouse_genomes_project 4 41176252 41177548 + Ccdc107 protein_coding processed_transcript MGP_CASTEiJ_T0065313.1 MGP_CASTEiJ_G0027346.1 mouse_genomes_project 4 41176713 41179263 + MGP_CASTEiJ_P0065313 Ccdc107 protein_coding protein_coding MGP_CASTEiJ_T0065314.1 MGP_CASTEiJ_G0027346.1 mouse_genomes_project 4 41176728 41177162 + Ccdc107 protein_coding processed_transcript MGP_CASTEiJ_T0065315.1 MGP_CASTEiJ_G0027346.1 mouse_genomes_project 4 41176740 41179263 + MGP_CASTEiJ_P0065315 Ccdc107 protein_coding protein_coding MGP_CASTEiJ_T0065316.1 MGP_CASTEiJ_G0027346.1 mouse_genomes_project 4 41176768 41179206 + Ccdc107 protein_coding processed_transcript MGP_CASTEiJ_T0065317.1 MGP_CASTEiJ_G0027346.1 mouse_genomes_project 4 41176768 41179213 + Ccdc107 protein_coding processed_transcript MGP_CASTEiJ_T0007837.1 MGP_CASTEiJ_G0006416.1 mouse_genomes_project 4 154567859 154569296 + lincRNA lincRNA MGP_CASTEiJ_T0014162.1 MGP_CASTEiJ_G0012325.1 mouse_genomes_project 4 82608832 82609134 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004320.1 MGP_CASTEiJ_G0003771.1 mouse_genomes_project 4 42432010 42452894 + Gm12462 antisense antisense MGP_CASTEiJ_T0065784.1 MGP_CASTEiJ_G0027454.1 mouse_genomes_project 4 55335396 55498379 - MGP_CASTEiJ_P0065784 protein_coding protein_coding MGP_CASTEiJ_T0065785.1 MGP_CASTEiJ_G0027454.1 mouse_genomes_project 4 55339103 55373393 - MGP_CASTEiJ_P0065785 protein_coding protein_coding MGP_CASTEiJ_T0065786.1 MGP_CASTEiJ_G0027454.1 mouse_genomes_project 4 55343674 55498239 - MGP_CASTEiJ_P0065786 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065787.1 MGP_CASTEiJ_G0027454.1 mouse_genomes_project 4 55408327 55498379 - MGP_CASTEiJ_P0065787 protein_coding protein_coding MGP_CASTEiJ_T0065788.1 MGP_CASTEiJ_G0027454.1 mouse_genomes_project 4 55409637 55417187 - protein_coding processed_transcript MGP_CASTEiJ_T0065789.1 MGP_CASTEiJ_G0027454.1 mouse_genomes_project 4 55419935 55450325 - protein_coding processed_transcript MGP_CASTEiJ_T0065790.1 MGP_CASTEiJ_G0027454.1 mouse_genomes_project 4 55425544 55493047 - protein_coding processed_transcript MGP_CASTEiJ_T0065791.1 MGP_CASTEiJ_G0027454.1 mouse_genomes_project 4 55434635 55471999 - protein_coding processed_transcript MGP_CASTEiJ_T0007674.1 MGP_CASTEiJ_G0006289.1 mouse_genomes_project 4 59570548 59574489 - Gm11211 lincRNA lincRNA MGP_CASTEiJ_T0014054.1 MGP_CASTEiJ_G0012217.1 mouse_genomes_project 4 38796076 38797032 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068578.1 MGP_CASTEiJ_G0028046.1 mouse_genomes_project 4 132936325 132946735 - MGP_CASTEiJ_P0068578 Cnksr1 protein_coding protein_coding MGP_CASTEiJ_T0068579.1 MGP_CASTEiJ_G0028046.1 mouse_genomes_project 4 132936333 132946675 - Cnksr1 protein_coding processed_transcript MGP_CASTEiJ_T0068580.1 MGP_CASTEiJ_G0028046.1 mouse_genomes_project 4 132937684 132938732 - Cnksr1 protein_coding processed_transcript MGP_CASTEiJ_T0068581.1 MGP_CASTEiJ_G0028046.1 mouse_genomes_project 4 132938721 132941477 - Cnksr1 protein_coding processed_transcript MGP_CASTEiJ_T0068582.1 MGP_CASTEiJ_G0028046.1 mouse_genomes_project 4 132940788 132944264 - Cnksr1 protein_coding processed_transcript MGP_CASTEiJ_T0102307.1 MGP_CASTEiJ_G0039032.1 mouse_genomes_project 4 70953911 70954607 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099837.1 MGP_CASTEiJ_G0036750.1 mouse_genomes_project 4 131508174 131508281 - Gm24913 snRNA snRNA MGP_CASTEiJ_T0065075.1 MGP_CASTEiJ_G0027304.1 mouse_genomes_project 4 38531905 38544106 - MGP_CASTEiJ_P0065075 Bag1 protein_coding protein_coding MGP_CASTEiJ_T0065076.1 MGP_CASTEiJ_G0027304.1 mouse_genomes_project 4 38532121 38544065 - MGP_CASTEiJ_P0065076 Bag1 protein_coding protein_coding MGP_CASTEiJ_T0068655.1 MGP_CASTEiJ_G0028065.1 mouse_genomes_project 4 133658207 133675137 - MGP_CASTEiJ_P0068655 Tmem50a protein_coding protein_coding MGP_CASTEiJ_T0068656.1 MGP_CASTEiJ_G0028065.1 mouse_genomes_project 4 133658697 133679964 - MGP_CASTEiJ_P0068656 Tmem50a protein_coding unknown_likely_coding MGP_CASTEiJ_T0068657.1 MGP_CASTEiJ_G0028065.1 mouse_genomes_project 4 133658743 133675128 - MGP_CASTEiJ_P0068657 Tmem50a protein_coding protein_coding MGP_CASTEiJ_T0066305.1 MGP_CASTEiJ_G0027578.1 mouse_genomes_project 4 87773285 87783687 + MGP_CASTEiJ_P0066305 Zfp352 protein_coding protein_coding MGP_CASTEiJ_T0066306.1 MGP_CASTEiJ_G0027578.1 mouse_genomes_project 4 87781594 87783250 + MGP_CASTEiJ_P0066306 Zfp352 protein_coding protein_coding MGP_CASTEiJ_T0102320.1 MGP_CASTEiJ_G0039045.1 mouse_genomes_project 4 112872937 112873983 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0069874.1 MGP_CASTEiJ_G0028322.1 mouse_genomes_project 4 154804629 154819801 - MGP_CASTEiJ_P0069874 Rer1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069875.1 MGP_CASTEiJ_G0028322.1 mouse_genomes_project 4 154805864 154819780 - Rer1 protein_coding processed_transcript MGP_CASTEiJ_T0069876.1 MGP_CASTEiJ_G0028322.1 mouse_genomes_project 4 154816088 154819791 - Rer1 protein_coding processed_transcript MGP_CASTEiJ_T0066289.1 MGP_CASTEiJ_G0027566.1 mouse_genomes_project 4 86179945 86184130 - MGP_CASTEiJ_P0066289 Klhl9 protein_coding protein_coding MGP_CASTEiJ_T0067419.1 MGP_CASTEiJ_G0027796.1 mouse_genomes_project 4 116170956 116180551 + MGP_CASTEiJ_P0067419 Med8 protein_coding protein_coding MGP_CASTEiJ_T0067420.1 MGP_CASTEiJ_G0027796.1 mouse_genomes_project 4 116170974 116179878 + MGP_CASTEiJ_P0067420 Med8 protein_coding protein_coding MGP_CASTEiJ_T0067421.1 MGP_CASTEiJ_G0027796.1 mouse_genomes_project 4 116170975 116178602 + Med8 protein_coding processed_transcript MGP_CASTEiJ_T0067422.1 MGP_CASTEiJ_G0027796.1 mouse_genomes_project 4 116171000 116179557 + MGP_CASTEiJ_P0067422 Med8 protein_coding protein_coding MGP_CASTEiJ_T0067423.1 MGP_CASTEiJ_G0027796.1 mouse_genomes_project 4 116171967 116173416 + Med8 protein_coding processed_transcript MGP_CASTEiJ_T0067424.1 MGP_CASTEiJ_G0027796.1 mouse_genomes_project 4 116173056 116174143 + Med8 protein_coding processed_transcript MGP_CASTEiJ_T0067425.1 MGP_CASTEiJ_G0027796.1 mouse_genomes_project 4 116173247 116178812 + Med8 protein_coding processed_transcript MGP_CASTEiJ_T0098384.1 MGP_CASTEiJ_G0035315.1 mouse_genomes_project 4 140956951 140958668 + pseudogene pseudogene MGP_CASTEiJ_T0101025.1 MGP_CASTEiJ_G0037938.1 mouse_genomes_project 4 22347476 22347599 - Gm25975 snoRNA snoRNA MGP_CASTEiJ_T0069996.1 MGP_CASTEiJ_G0028343.1 mouse_genomes_project 4 155603280 155604031 + Mrpl20 protein_coding processed_transcript MGP_CASTEiJ_T0069997.1 MGP_CASTEiJ_G0028343.1 mouse_genomes_project 4 155603909 155609523 + MGP_CASTEiJ_P0069997 Mrpl20 protein_coding protein_coding MGP_CASTEiJ_T0069998.1 MGP_CASTEiJ_G0028343.1 mouse_genomes_project 4 155604035 155609490 + MGP_CASTEiJ_P0069998 Mrpl20 protein_coding protein_coding MGP_CASTEiJ_T0069999.1 MGP_CASTEiJ_G0028343.1 mouse_genomes_project 4 155604038 155610656 + MGP_CASTEiJ_P0069999 Mrpl20 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0070000.1 MGP_CASTEiJ_G0028343.1 mouse_genomes_project 4 155604040 155607847 + MGP_CASTEiJ_P0070000 Mrpl20 protein_coding protein_coding MGP_CASTEiJ_T0070001.1 MGP_CASTEiJ_G0028343.1 mouse_genomes_project 4 155604147 155609486 + Mrpl20 protein_coding processed_transcript MGP_CASTEiJ_T0065919.1 MGP_CASTEiJ_G0027487.1 mouse_genomes_project 4 59271410 59280553 - MGP_CASTEiJ_P0065919 Rnf183 protein_coding protein_coding MGP_CASTEiJ_T0065920.1 MGP_CASTEiJ_G0027487.1 mouse_genomes_project 4 59271412 59280021 - MGP_CASTEiJ_P0065920 Rnf183 protein_coding protein_coding MGP_CASTEiJ_T0065921.1 MGP_CASTEiJ_G0027487.1 mouse_genomes_project 4 59271857 59272430 - MGP_CASTEiJ_P0065921 Rnf183 protein_coding protein_coding MGP_CASTEiJ_T0064867.1 MGP_CASTEiJ_G0027256.1 mouse_genomes_project 4 22036461 22082836 - MGP_CASTEiJ_P0064867 Fhl5 protein_coding protein_coding MGP_CASTEiJ_T0064868.1 MGP_CASTEiJ_G0027256.1 mouse_genomes_project 4 22036461 22082836 - MGP_CASTEiJ_P0064868 Fhl5 protein_coding protein_coding MGP_CASTEiJ_T0007615.1 MGP_CASTEiJ_G0006238.1 mouse_genomes_project 4 8646478 8656054 - Gm11840 lincRNA lincRNA MGP_CASTEiJ_T0066893.1 MGP_CASTEiJ_G0027692.1 mouse_genomes_project 4 106735034 106804780 + MGP_CASTEiJ_P0066893 3110021N24Rik protein_coding protein_coding MGP_CASTEiJ_T0065381.1 MGP_CASTEiJ_G0027356.1 mouse_genomes_project 4 41352098 41352922 - MGP_CASTEiJ_P0065381 Spag8 protein_coding protein_coding MGP_CASTEiJ_T0065382.1 MGP_CASTEiJ_G0027356.1 mouse_genomes_project 4 41352098 41354315 - MGP_CASTEiJ_P0065382 Spag8 protein_coding protein_coding MGP_CASTEiJ_T0065383.1 MGP_CASTEiJ_G0027356.1 mouse_genomes_project 4 41352439 41354357 - MGP_CASTEiJ_P0065383 Spag8 protein_coding protein_coding MGP_CASTEiJ_T0014128.1 MGP_CASTEiJ_G0012291.1 mouse_genomes_project 4 70597960 70598826 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068778.1 MGP_CASTEiJ_G0028089.1 mouse_genomes_project 4 135029788 135031685 + MGP_CASTEiJ_P0068778 Id3 protein_coding protein_coding MGP_CASTEiJ_T0068779.1 MGP_CASTEiJ_G0028089.1 mouse_genomes_project 4 135030156 135031009 + Id3 protein_coding retained_intron MGP_CASTEiJ_T0068780.1 MGP_CASTEiJ_G0028089.1 mouse_genomes_project 4 135031266 135032048 + Id3 protein_coding processed_transcript MGP_CASTEiJ_T0101020.1 MGP_CASTEiJ_G0037933.1 mouse_genomes_project 4 10763371 10763503 - Gm24068 snoRNA snoRNA MGP_CASTEiJ_T0069755.1 MGP_CASTEiJ_G0028302.1 mouse_genomes_project 4 153641648 153677288 + MGP_CASTEiJ_P0069755 Cep104 protein_coding protein_coding MGP_CASTEiJ_T0069756.1 MGP_CASTEiJ_G0028302.1 mouse_genomes_project 4 153641999 153677099 + MGP_CASTEiJ_P0069756 Cep104 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069757.1 MGP_CASTEiJ_G0028302.1 mouse_genomes_project 4 153647850 153677296 + MGP_CASTEiJ_P0069757 Cep104 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069758.1 MGP_CASTEiJ_G0028302.1 mouse_genomes_project 4 153654854 153677288 + MGP_CASTEiJ_P0069758 Cep104 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069759.1 MGP_CASTEiJ_G0028302.1 mouse_genomes_project 4 153655596 153656467 + Cep104 protein_coding retained_intron MGP_CASTEiJ_T0069972.1 MGP_CASTEiJ_G0028336.1 mouse_genomes_project 4 155481404 155483547 + MGP_CASTEiJ_P0069972 Fndc10 protein_coding protein_coding MGP_CASTEiJ_T0068012.1 MGP_CASTEiJ_G0027942.1 mouse_genomes_project 4 127491031 127497058 + MGP_CASTEiJ_P0068012 Tmem54 protein_coding protein_coding MGP_CASTEiJ_T0068013.1 MGP_CASTEiJ_G0027942.1 mouse_genomes_project 4 127491057 127497058 + MGP_CASTEiJ_P0068013 Tmem54 protein_coding protein_coding MGP_CASTEiJ_T0068014.1 MGP_CASTEiJ_G0027942.1 mouse_genomes_project 4 127491084 127496949 + MGP_CASTEiJ_P0068014 Tmem54 protein_coding protein_coding MGP_CASTEiJ_T0068015.1 MGP_CASTEiJ_G0027942.1 mouse_genomes_project 4 127492352 127495975 + MGP_CASTEiJ_P0068015 Tmem54 protein_coding protein_coding MGP_CASTEiJ_T0101026.1 MGP_CASTEiJ_G0037939.1 mouse_genomes_project 4 25353117 25353241 + Gm25378 snoRNA snoRNA MGP_CASTEiJ_T0007632.1 MGP_CASTEiJ_G0006254.1 mouse_genomes_project 4 27538511 27637163 + Gm11924 lincRNA lincRNA MGP_CASTEiJ_T0010354.1 MGP_CASTEiJ_G0008542.1 mouse_genomes_project 4 149380844 149380946 + Mir34a miRNA miRNA MGP_CASTEiJ_T0014280.1 MGP_CASTEiJ_G0012443.1 mouse_genomes_project 4 122765958 122766598 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004420.1 MGP_CASTEiJ_G0003847.1 mouse_genomes_project 4 132537971 132542686 + Gm12977 antisense antisense MGP_CASTEiJ_T0004421.1 MGP_CASTEiJ_G0003847.1 mouse_genomes_project 4 132538615 132541889 + Gm12977 antisense antisense MGP_CASTEiJ_T0069141.1 MGP_CASTEiJ_G0028174.1 mouse_genomes_project 4 140785740 140801282 - MGP_CASTEiJ_P0069141 Clcnka protein_coding protein_coding MGP_CASTEiJ_T0069142.1 MGP_CASTEiJ_G0028174.1 mouse_genomes_project 4 140785740 140800762 - MGP_CASTEiJ_P0069142 Clcnka protein_coding protein_coding MGP_CASTEiJ_T0069143.1 MGP_CASTEiJ_G0028174.1 mouse_genomes_project 4 140793983 140797444 - Clcnka protein_coding retained_intron MGP_CASTEiJ_T0069144.1 MGP_CASTEiJ_G0028174.1 mouse_genomes_project 4 140797736 140801132 - MGP_CASTEiJ_P0069144 Clcnka protein_coding protein_coding MGP_CASTEiJ_T0010355.1 MGP_CASTEiJ_G0008543.1 mouse_genomes_project 4 152603955 152604050 - Gm25779 miRNA miRNA MGP_CASTEiJ_T0066279.1 MGP_CASTEiJ_G0027560.1 mouse_genomes_project 4 86058071 86058871 - MGP_CASTEiJ_P0066279 protein_coding protein_coding MGP_CASTEiJ_T0007813.1 MGP_CASTEiJ_G0006393.1 mouse_genomes_project 4 139191601 139205761 - 4933427I22Rik lincRNA lincRNA MGP_CASTEiJ_T0007814.1 MGP_CASTEiJ_G0006393.1 mouse_genomes_project 4 139192173 139198420 - 4933427I22Rik lincRNA lincRNA MGP_CASTEiJ_T0013988.1 MGP_CASTEiJ_G0012151.1 mouse_genomes_project 4 19421570 19422142 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014176.1 MGP_CASTEiJ_G0012339.1 mouse_genomes_project 4 89280116 89281448 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068968.1 MGP_CASTEiJ_G0028132.1 mouse_genomes_project 4 137905546 137910909 + MGP_CASTEiJ_P0068968 Pla2g2d protein_coding protein_coding MGP_CASTEiJ_T0067867.1 MGP_CASTEiJ_G0027909.1 mouse_genomes_project 4 124521619 124540400 - MGP_CASTEiJ_P0067867 protein_coding protein_coding MGP_CASTEiJ_T0067868.1 MGP_CASTEiJ_G0027909.1 mouse_genomes_project 4 124531644 124625598 - MGP_CASTEiJ_P0067868 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067869.1 MGP_CASTEiJ_G0027909.1 mouse_genomes_project 4 124532849 124625598 - MGP_CASTEiJ_P0067869 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067870.1 MGP_CASTEiJ_G0027909.1 mouse_genomes_project 4 124535681 124540985 - MGP_CASTEiJ_P0067870 protein_coding protein_coding MGP_CASTEiJ_T0067871.1 MGP_CASTEiJ_G0027909.1 mouse_genomes_project 4 124567685 124600172 - protein_coding processed_transcript MGP_CASTEiJ_T0067872.1 MGP_CASTEiJ_G0027909.1 mouse_genomes_project 4 124592235 124600213 - protein_coding processed_transcript MGP_CASTEiJ_T0067873.1 MGP_CASTEiJ_G0027909.1 mouse_genomes_project 4 124604334 124625621 - protein_coding processed_transcript MGP_CASTEiJ_T0068278.1 MGP_CASTEiJ_G0027987.1 mouse_genomes_project 4 130298934 130327114 + MGP_CASTEiJ_P0068278 Mecr protein_coding protein_coding MGP_CASTEiJ_T0068279.1 MGP_CASTEiJ_G0027987.1 mouse_genomes_project 4 130298957 130319002 + MGP_CASTEiJ_P0068279 Mecr protein_coding protein_coding MGP_CASTEiJ_T0068280.1 MGP_CASTEiJ_G0027987.1 mouse_genomes_project 4 130298969 130299473 + Mecr protein_coding processed_transcript MGP_CASTEiJ_T0068281.1 MGP_CASTEiJ_G0027987.1 mouse_genomes_project 4 130311839 130319137 + Mecr protein_coding processed_transcript MGP_CASTEiJ_T0068282.1 MGP_CASTEiJ_G0027987.1 mouse_genomes_project 4 130311898 130316309 + Mecr protein_coding processed_transcript MGP_CASTEiJ_T0068283.1 MGP_CASTEiJ_G0027987.1 mouse_genomes_project 4 130315874 130324662 + Mecr protein_coding processed_transcript MGP_CASTEiJ_T0068284.1 MGP_CASTEiJ_G0027987.1 mouse_genomes_project 4 130315900 130327114 + Mecr protein_coding processed_transcript MGP_CASTEiJ_T0068285.1 MGP_CASTEiJ_G0027987.1 mouse_genomes_project 4 130318371 130324404 + Mecr protein_coding processed_transcript MGP_CASTEiJ_T0068286.1 MGP_CASTEiJ_G0027987.1 mouse_genomes_project 4 130319848 130326929 + Mecr protein_coding processed_transcript MGP_CASTEiJ_T0068287.1 MGP_CASTEiJ_G0027987.1 mouse_genomes_project 4 130324107 130327104 + Mecr protein_coding processed_transcript MGP_CASTEiJ_T0011233.1 MGP_CASTEiJ_G0009421.1 mouse_genomes_project 4 45552179 45552306 + Gm27601 misc_RNA misc_RNA MGP_CASTEiJ_T0017299.1 MGP_CASTEiJ_G0014858.1 mouse_genomes_project 4 39174246 39179376 + Gm12404 processed_transcript processed_transcript MGP_CASTEiJ_T0098602.1 MGP_CASTEiJ_G0035533.1 mouse_genomes_project 4 79711068 79711173 + n-R5s188 rRNA rRNA MGP_CASTEiJ_T0064854.1 MGP_CASTEiJ_G0027253.1 mouse_genomes_project 4 21451746 21683702 - MGP_CASTEiJ_P0064854 Klhl32 protein_coding protein_coding MGP_CASTEiJ_T0064855.1 MGP_CASTEiJ_G0027253.1 mouse_genomes_project 4 21451746 21636816 - MGP_CASTEiJ_P0064855 Klhl32 protein_coding protein_coding MGP_CASTEiJ_T0064856.1 MGP_CASTEiJ_G0027253.1 mouse_genomes_project 4 21455172 21579274 - MGP_CASTEiJ_P0064856 Klhl32 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064857.1 MGP_CASTEiJ_G0027253.1 mouse_genomes_project 4 21455261 21683509 - MGP_CASTEiJ_P0064857 Klhl32 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064858.1 MGP_CASTEiJ_G0027253.1 mouse_genomes_project 4 21456476 21683664 - MGP_CASTEiJ_P0064858 Klhl32 protein_coding protein_coding MGP_CASTEiJ_T0064859.1 MGP_CASTEiJ_G0027253.1 mouse_genomes_project 4 21477628 21683510 - MGP_CASTEiJ_P0064859 Klhl32 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064860.1 MGP_CASTEiJ_G0027253.1 mouse_genomes_project 4 21485244 21683509 - Klhl32 protein_coding retained_intron MGP_CASTEiJ_T0064861.1 MGP_CASTEiJ_G0027253.1 mouse_genomes_project 4 21485786 21511842 - Klhl32 protein_coding processed_transcript MGP_CASTEiJ_T0101095.1 MGP_CASTEiJ_G0038008.1 mouse_genomes_project 4 130866297 130866502 - Snora73a snoRNA snoRNA MGP_CASTEiJ_T0010349.1 MGP_CASTEiJ_G0008537.1 mouse_genomes_project 4 140740281 140740358 + Gm25690 miRNA miRNA MGP_CASTEiJ_T0013940.1 MGP_CASTEiJ_G0012103.1 mouse_genomes_project 4 3038478 3038922 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010333.1 MGP_CASTEiJ_G0008521.1 mouse_genomes_project 4 132203053 132203179 - Gm23158 miRNA miRNA MGP_CASTEiJ_T0065201.1 MGP_CASTEiJ_G0027333.1 mouse_genomes_project 4 40609566 40612487 + 1700022I11Rik protein_coding processed_transcript MGP_CASTEiJ_T0065202.1 MGP_CASTEiJ_G0027333.1 mouse_genomes_project 4 40609593 40612453 + MGP_CASTEiJ_P0065202 1700022I11Rik protein_coding protein_coding MGP_CASTEiJ_T0065203.1 MGP_CASTEiJ_G0027333.1 mouse_genomes_project 4 40609894 40612643 + MGP_CASTEiJ_P0065203 1700022I11Rik protein_coding protein_coding MGP_CASTEiJ_T0065204.1 MGP_CASTEiJ_G0027333.1 mouse_genomes_project 4 40609906 40624950 + MGP_CASTEiJ_P0065204 1700022I11Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065205.1 MGP_CASTEiJ_G0027333.1 mouse_genomes_project 4 40609906 40615460 + MGP_CASTEiJ_P0065205 1700022I11Rik protein_coding protein_coding MGP_CASTEiJ_T0070024.1 MGP_CASTEiJ_G0028347.1 mouse_genomes_project 4 155658598 155670561 + MGP_CASTEiJ_P0070024 Dvl1 protein_coding protein_coding MGP_CASTEiJ_T0070025.1 MGP_CASTEiJ_G0028347.1 mouse_genomes_project 4 155658657 155670138 + MGP_CASTEiJ_P0070025 Dvl1 protein_coding protein_coding MGP_CASTEiJ_T0070026.1 MGP_CASTEiJ_G0028347.1 mouse_genomes_project 4 155658662 155670560 + Dvl1 protein_coding retained_intron MGP_CASTEiJ_T0070027.1 MGP_CASTEiJ_G0028347.1 mouse_genomes_project 4 155658762 155670561 + Dvl1 protein_coding retained_intron MGP_CASTEiJ_T0070028.1 MGP_CASTEiJ_G0028347.1 mouse_genomes_project 4 155658782 155670561 + Dvl1 protein_coding retained_intron MGP_CASTEiJ_T0070029.1 MGP_CASTEiJ_G0028347.1 mouse_genomes_project 4 155658867 155670561 + Dvl1 protein_coding retained_intron MGP_CASTEiJ_T0070030.1 MGP_CASTEiJ_G0028347.1 mouse_genomes_project 4 155658898 155670691 + MGP_CASTEiJ_P0070030 Dvl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0070031.1 MGP_CASTEiJ_G0028347.1 mouse_genomes_project 4 155664666 155665208 + Dvl1 protein_coding processed_transcript MGP_CASTEiJ_T0070032.1 MGP_CASTEiJ_G0028347.1 mouse_genomes_project 4 155665828 155667488 + Dvl1 protein_coding retained_intron MGP_CASTEiJ_T0066441.1 MGP_CASTEiJ_G0027608.1 mouse_genomes_project 4 96396123 96462791 - MGP_CASTEiJ_P0066441 Kank4 protein_coding protein_coding MGP_CASTEiJ_T0066442.1 MGP_CASTEiJ_G0027608.1 mouse_genomes_project 4 96397537 96413143 - Kank4 protein_coding processed_transcript MGP_CASTEiJ_T0064561.1 MGP_CASTEiJ_G0027186.1 mouse_genomes_project 4 2706628 2738762 + MGP_CASTEiJ_P0064561 Ubxn2b protein_coding protein_coding MGP_CASTEiJ_T0069266.1 MGP_CASTEiJ_G0028217.1 mouse_genomes_project 4 144464660 144492303 + Dhrs3 protein_coding processed_transcript MGP_CASTEiJ_T0069267.1 MGP_CASTEiJ_G0028217.1 mouse_genomes_project 4 144464666 144492229 + MGP_CASTEiJ_P0069267 Dhrs3 protein_coding protein_coding MGP_CASTEiJ_T0069268.1 MGP_CASTEiJ_G0028217.1 mouse_genomes_project 4 144464748 144499710 + MGP_CASTEiJ_P0069268 Dhrs3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069269.1 MGP_CASTEiJ_G0028217.1 mouse_genomes_project 4 144465045 144499720 + MGP_CASTEiJ_P0069269 Dhrs3 protein_coding protein_coding MGP_CASTEiJ_T0069270.1 MGP_CASTEiJ_G0028217.1 mouse_genomes_project 4 144491205 144492303 + Dhrs3 protein_coding retained_intron MGP_CASTEiJ_T0069259.1 MGP_CASTEiJ_G0028210.1 mouse_genomes_project 4 144051745 144061793 - MGP_CASTEiJ_P0069259 Aadacl3 protein_coding protein_coding MGP_CASTEiJ_T0066995.1 MGP_CASTEiJ_G0027710.1 mouse_genomes_project 4 109405664 109486687 - MGP_CASTEiJ_P0066995 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0013947.1 MGP_CASTEiJ_G0012110.1 mouse_genomes_project 4 5471288 5471685 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069578.1 MGP_CASTEiJ_G0028275.1 mouse_genomes_project 4 150423026 150427758 + MGP_CASTEiJ_P0069578 Uts2 protein_coding protein_coding MGP_CASTEiJ_T0014053.1 MGP_CASTEiJ_G0012216.1 mouse_genomes_project 4 38754677 38755011 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069429.1 MGP_CASTEiJ_G0028250.1 mouse_genomes_project 4 148359122 148379408 - MGP_CASTEiJ_P0069429 Apitd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069430.1 MGP_CASTEiJ_G0028250.1 mouse_genomes_project 4 148360342 148379433 - MGP_CASTEiJ_P0069430 Apitd1 protein_coding protein_coding MGP_CASTEiJ_T0069431.1 MGP_CASTEiJ_G0028250.1 mouse_genomes_project 4 148360538 148379429 - MGP_CASTEiJ_P0069431 Apitd1 protein_coding protein_coding MGP_CASTEiJ_T0069432.1 MGP_CASTEiJ_G0028250.1 mouse_genomes_project 4 148360545 148362456 - Apitd1 protein_coding retained_intron MGP_CASTEiJ_T0069433.1 MGP_CASTEiJ_G0028250.1 mouse_genomes_project 4 148363357 148379437 - MGP_CASTEiJ_P0069433 Apitd1 protein_coding protein_coding MGP_CASTEiJ_T0014210.1 MGP_CASTEiJ_G0012373.1 mouse_genomes_project 4 101712869 101713110 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014153.1 MGP_CASTEiJ_G0012316.1 mouse_genomes_project 4 78745881 78752823 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068231.1 MGP_CASTEiJ_G0027978.1 mouse_genomes_project 4 128835363 128842315 + MGP_CASTEiJ_P0068231 Fabp3 protein_coding protein_coding MGP_CASTEiJ_T0007693.1 MGP_CASTEiJ_G0006308.1 mouse_genomes_project 4 86560910 86600618 + Gm12603 lincRNA lincRNA MGP_CASTEiJ_T0007694.1 MGP_CASTEiJ_G0006308.1 mouse_genomes_project 4 86573657 86600721 + Gm12603 lincRNA lincRNA MGP_CASTEiJ_T0011228.1 MGP_CASTEiJ_G0009416.1 mouse_genomes_project 4 29713565 29713832 + Gm24371 misc_RNA misc_RNA MGP_CASTEiJ_T0069849.1 MGP_CASTEiJ_G0028319.1 mouse_genomes_project 4 154693030 154710197 + MGP_CASTEiJ_P0069849 Pank4 protein_coding protein_coding MGP_CASTEiJ_T0069850.1 MGP_CASTEiJ_G0028319.1 mouse_genomes_project 4 154693040 154710264 + MGP_CASTEiJ_P0069850 Pank4 protein_coding protein_coding MGP_CASTEiJ_T0069851.1 MGP_CASTEiJ_G0028319.1 mouse_genomes_project 4 154699362 154710215 + MGP_CASTEiJ_P0069851 Pank4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069852.1 MGP_CASTEiJ_G0028319.1 mouse_genomes_project 4 154703867 154710264 + Pank4 protein_coding retained_intron MGP_CASTEiJ_T0069853.1 MGP_CASTEiJ_G0028319.1 mouse_genomes_project 4 154705593 154708477 + Pank4 protein_coding retained_intron MGP_CASTEiJ_T0069854.1 MGP_CASTEiJ_G0028319.1 mouse_genomes_project 4 154705601 154708547 + Pank4 protein_coding retained_intron MGP_CASTEiJ_T0069855.1 MGP_CASTEiJ_G0028319.1 mouse_genomes_project 4 154705900 154710260 + Pank4 protein_coding retained_intron MGP_CASTEiJ_T0066138.1 MGP_CASTEiJ_G0027537.1 mouse_genomes_project 4 80151568 80154955 - MGP_CASTEiJ_P0066138 Cer1 protein_coding protein_coding MGP_CASTEiJ_T0014322.1 MGP_CASTEiJ_G0012485.1 mouse_genomes_project 4 142687999 142688458 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010293.1 MGP_CASTEiJ_G0008481.1 mouse_genomes_project 4 42371847 42371925 - Mir5120 miRNA miRNA MGP_CASTEiJ_T0017319.1 MGP_CASTEiJ_G0014873.1 mouse_genomes_project 4 92077113 92093197 - Gm12655 processed_transcript processed_transcript MGP_CASTEiJ_T0017320.1 MGP_CASTEiJ_G0014873.1 mouse_genomes_project 4 92078169 92093184 - Gm12655 processed_transcript processed_transcript MGP_CASTEiJ_T0066335.1 MGP_CASTEiJ_G0027585.1 mouse_genomes_project 4 92236187 92325485 + MGP_CASTEiJ_P0066335 Ift74 protein_coding protein_coding MGP_CASTEiJ_T0066336.1 MGP_CASTEiJ_G0027585.1 mouse_genomes_project 4 92236187 92293422 + MGP_CASTEiJ_P0066336 Ift74 protein_coding protein_coding MGP_CASTEiJ_T0066339.1 MGP_CASTEiJ_G0027585.1 mouse_genomes_project 4 92306277 92319416 + Ift74 protein_coding processed_transcript MGP_CASTEiJ_T0101039.1 MGP_CASTEiJ_G0037952.1 mouse_genomes_project 4 46911272 46911397 + Gm23746 snoRNA snoRNA MGP_CASTEiJ_T0069263.1 MGP_CASTEiJ_G0028214.1 mouse_genomes_project 4 144262947 144277153 - MGP_CASTEiJ_P0069263 Gm436 protein_coding protein_coding MGP_CASTEiJ_T0014272.1 MGP_CASTEiJ_G0012435.1 mouse_genomes_project 4 120117049 120117952 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067128.1 MGP_CASTEiJ_G0027745.1 mouse_genomes_project 4 113639089 113661429 - MGP_CASTEiJ_P0067128 protein_coding protein_coding MGP_CASTEiJ_T0067129.1 MGP_CASTEiJ_G0027745.1 mouse_genomes_project 4 113639252 113654944 - MGP_CASTEiJ_P0067129 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067130.1 MGP_CASTEiJ_G0027745.1 mouse_genomes_project 4 113640159 113660933 - MGP_CASTEiJ_P0067130 protein_coding protein_coding MGP_CASTEiJ_T0067131.1 MGP_CASTEiJ_G0027745.1 mouse_genomes_project 4 113646251 113653413 - protein_coding processed_transcript MGP_CASTEiJ_T0067132.1 MGP_CASTEiJ_G0027745.1 mouse_genomes_project 4 113652217 113654813 - protein_coding retained_intron MGP_CASTEiJ_T0067133.1 MGP_CASTEiJ_G0027745.1 mouse_genomes_project 4 113654913 113655850 - protein_coding processed_transcript MGP_CASTEiJ_T0067895.1 MGP_CASTEiJ_G0027915.1 mouse_genomes_project 4 124938667 124958876 - MGP_CASTEiJ_P0067895 Tfap2e protein_coding protein_coding MGP_CASTEiJ_T0007745.1 MGP_CASTEiJ_G0006349.1 mouse_genomes_project 4 122323838 122329881 - Gm12916 lincRNA lincRNA MGP_CASTEiJ_T0069240.1 MGP_CASTEiJ_G0028197.1 mouse_genomes_project 4 142905675 142930531 + MGP_CASTEiJ_P0069240 Lrrc38 protein_coding protein_coding MGP_CASTEiJ_T0101047.1 MGP_CASTEiJ_G0037960.1 mouse_genomes_project 4 55089272 55089388 - Gm22952 snoRNA snoRNA MGP_CASTEiJ_T0014036.1 MGP_CASTEiJ_G0012199.1 mouse_genomes_project 4 32782855 32783288 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014127.1 MGP_CASTEiJ_G0012290.1 mouse_genomes_project 4 70523187 70524363 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064967.1 MGP_CASTEiJ_G0027279.1 mouse_genomes_project 4 31882015 31900391 + MGP_CASTEiJ_P0064967 Akirin2 protein_coding protein_coding MGP_CASTEiJ_T0064968.1 MGP_CASTEiJ_G0027279.1 mouse_genomes_project 4 31882029 31896252 + Akirin2 protein_coding processed_transcript MGP_CASTEiJ_T0101080.1 MGP_CASTEiJ_G0037993.1 mouse_genomes_project 4 121225635 121225766 + Gm25788 snoRNA snoRNA MGP_CASTEiJ_T0069568.1 MGP_CASTEiJ_G0028273.1 mouse_genomes_project 4 150330801 150355930 + MGP_CASTEiJ_P0069568 Tnfrsf9 protein_coding protein_coding MGP_CASTEiJ_T0069570.1 MGP_CASTEiJ_G0028273.1 mouse_genomes_project 4 150336450 150368918 + MGP_CASTEiJ_P0069570 Tnfrsf9 protein_coding protein_coding MGP_CASTEiJ_T0069571.1 MGP_CASTEiJ_G0028273.1 mouse_genomes_project 4 150336485 150368918 + MGP_CASTEiJ_P0069571 Tnfrsf9 protein_coding protein_coding MGP_CASTEiJ_T0069572.1 MGP_CASTEiJ_G0028273.1 mouse_genomes_project 4 150344924 150368085 + MGP_CASTEiJ_P0069572 Tnfrsf9 protein_coding protein_coding MGP_CASTEiJ_T0069573.1 MGP_CASTEiJ_G0028273.1 mouse_genomes_project 4 150349442 150355921 + MGP_CASTEiJ_P0069573 Tnfrsf9 protein_coding protein_coding MGP_CASTEiJ_T0069574.1 MGP_CASTEiJ_G0028273.1 mouse_genomes_project 4 150349523 150351469 + Tnfrsf9 protein_coding processed_transcript MGP_CASTEiJ_T0069575.1 MGP_CASTEiJ_G0028273.1 mouse_genomes_project 4 150349523 150368918 + MGP_CASTEiJ_P0069575 Tnfrsf9 protein_coding protein_coding MGP_CASTEiJ_T0069576.1 MGP_CASTEiJ_G0028273.1 mouse_genomes_project 4 150351196 150367924 + MGP_CASTEiJ_P0069576 Tnfrsf9 protein_coding protein_coding MGP_CASTEiJ_T0069577.1 MGP_CASTEiJ_G0028273.1 mouse_genomes_project 4 150351317 150357075 + MGP_CASTEiJ_P0069577 Tnfrsf9 protein_coding protein_coding MGP_CASTEiJ_T0068390.1 MGP_CASTEiJ_G0028007.1 mouse_genomes_project 4 131270335 131298060 - MGP_CASTEiJ_P0068390 Smpdl3b protein_coding protein_coding MGP_CASTEiJ_T0014080.1 MGP_CASTEiJ_G0012243.1 mouse_genomes_project 4 50497240 50498629 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004400.1 MGP_CASTEiJ_G0003831.1 mouse_genomes_project 4 121887125 121901186 - Gm12905 antisense antisense MGP_CASTEiJ_T0004401.1 MGP_CASTEiJ_G0003831.1 mouse_genomes_project 4 121887293 121887572 - Gm12905 antisense antisense MGP_CASTEiJ_T0010298.1 MGP_CASTEiJ_G0008486.1 mouse_genomes_project 4 56865564 56865651 - Mir3095 miRNA miRNA MGP_CASTEiJ_T0066278.1 MGP_CASTEiJ_G0027559.1 mouse_genomes_project 4 86016201 86103792 - MGP_CASTEiJ_P0066278 Ifna6 protein_coding protein_coding MGP_CASTEiJ_T0007617.1 MGP_CASTEiJ_G0006240.1 mouse_genomes_project 4 9706485 9726711 + Gm11820 lincRNA lincRNA MGP_CASTEiJ_T0068027.1 MGP_CASTEiJ_G0027944.1 mouse_genomes_project 4 127536299 127583472 - MGP_CASTEiJ_P0068027 S100pbp protein_coding protein_coding MGP_CASTEiJ_T0068028.1 MGP_CASTEiJ_G0027944.1 mouse_genomes_project 4 127536299 127583656 - MGP_CASTEiJ_P0068028 S100pbp protein_coding protein_coding MGP_CASTEiJ_T0068029.1 MGP_CASTEiJ_G0027944.1 mouse_genomes_project 4 127536299 127583509 - MGP_CASTEiJ_P0068029 S100pbp protein_coding protein_coding MGP_CASTEiJ_T0068030.1 MGP_CASTEiJ_G0027944.1 mouse_genomes_project 4 127538648 127576513 - MGP_CASTEiJ_P0068030 S100pbp protein_coding protein_coding MGP_CASTEiJ_T0068031.1 MGP_CASTEiJ_G0027944.1 mouse_genomes_project 4 127539636 127583554 - MGP_CASTEiJ_P0068031 S100pbp protein_coding unknown_likely_coding MGP_CASTEiJ_T0068032.1 MGP_CASTEiJ_G0027944.1 mouse_genomes_project 4 127539636 127583414 - MGP_CASTEiJ_P0068032 S100pbp protein_coding unknown_likely_coding MGP_CASTEiJ_T0068033.1 MGP_CASTEiJ_G0027944.1 mouse_genomes_project 4 127539827 127583507 - S100pbp protein_coding processed_transcript MGP_CASTEiJ_T0068034.1 MGP_CASTEiJ_G0027944.1 mouse_genomes_project 4 127540106 127574381 - S100pbp protein_coding retained_intron MGP_CASTEiJ_T0068035.1 MGP_CASTEiJ_G0027944.1 mouse_genomes_project 4 127540106 127583507 - S100pbp protein_coding retained_intron MGP_CASTEiJ_T0068036.1 MGP_CASTEiJ_G0027944.1 mouse_genomes_project 4 127540312 127583442 - MGP_CASTEiJ_P0068036 S100pbp protein_coding protein_coding MGP_CASTEiJ_T0068037.1 MGP_CASTEiJ_G0027944.1 mouse_genomes_project 4 127540312 127583539 - MGP_CASTEiJ_P0068037 S100pbp protein_coding protein_coding MGP_CASTEiJ_T0068038.1 MGP_CASTEiJ_G0027944.1 mouse_genomes_project 4 127555421 127583547 - S100pbp protein_coding processed_transcript MGP_CASTEiJ_T0068039.1 MGP_CASTEiJ_G0027944.1 mouse_genomes_project 4 127560611 127571106 - S100pbp protein_coding processed_transcript MGP_CASTEiJ_T0068040.1 MGP_CASTEiJ_G0027944.1 mouse_genomes_project 4 127569962 127583556 - MGP_CASTEiJ_P0068040 S100pbp protein_coding protein_coding MGP_CASTEiJ_T0068041.1 MGP_CASTEiJ_G0027944.1 mouse_genomes_project 4 127575724 127583599 - S100pbp protein_coding processed_transcript MGP_CASTEiJ_T0068042.1 MGP_CASTEiJ_G0027944.1 mouse_genomes_project 4 127575782 127583428 - S100pbp protein_coding processed_transcript MGP_CASTEiJ_T0014151.1 MGP_CASTEiJ_G0012314.1 mouse_genomes_project 4 77313800 77314943 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017328.1 MGP_CASTEiJ_G0014880.1 mouse_genomes_project 4 104088021 104144054 + Gm12724 processed_transcript processed_transcript MGP_CASTEiJ_T0004344.1 MGP_CASTEiJ_G0003793.1 mouse_genomes_project 4 86197787 86204789 - Gm13274 antisense antisense MGP_CASTEiJ_T0004345.1 MGP_CASTEiJ_G0003793.1 mouse_genomes_project 4 86197880 86204788 - Gm13274 antisense antisense MGP_CASTEiJ_T0067646.1 MGP_CASTEiJ_G0027856.1 mouse_genomes_project 4 120708613 120731114 + MGP_CASTEiJ_P0067646 Ppt1 protein_coding protein_coding MGP_CASTEiJ_T0067647.1 MGP_CASTEiJ_G0027856.1 mouse_genomes_project 4 120708617 120721010 + MGP_CASTEiJ_P0067647 Ppt1 protein_coding protein_coding MGP_CASTEiJ_T0067648.1 MGP_CASTEiJ_G0027856.1 mouse_genomes_project 4 120708621 120731211 + MGP_CASTEiJ_P0067648 Ppt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067649.1 MGP_CASTEiJ_G0027856.1 mouse_genomes_project 4 120708625 120722291 + MGP_CASTEiJ_P0067649 Ppt1 protein_coding protein_coding MGP_CASTEiJ_T0065350.1 MGP_CASTEiJ_G0027351.1 mouse_genomes_project 4 41251484 41256202 + MGP_CASTEiJ_P0065350 Creb3 protein_coding protein_coding MGP_CASTEiJ_T0065351.1 MGP_CASTEiJ_G0027351.1 mouse_genomes_project 4 41251964 41255939 + MGP_CASTEiJ_P0065351 Creb3 protein_coding protein_coding MGP_CASTEiJ_T0065352.1 MGP_CASTEiJ_G0027351.1 mouse_genomes_project 4 41252098 41254461 + MGP_CASTEiJ_P0065352 Creb3 protein_coding protein_coding MGP_CASTEiJ_T0065353.1 MGP_CASTEiJ_G0027351.1 mouse_genomes_project 4 41252418 41255669 + Creb3 protein_coding retained_intron MGP_CASTEiJ_T0065354.1 MGP_CASTEiJ_G0027351.1 mouse_genomes_project 4 41252581 41254695 + Creb3 protein_coding retained_intron MGP_CASTEiJ_T0065355.1 MGP_CASTEiJ_G0027351.1 mouse_genomes_project 4 41255156 41255846 + Creb3 protein_coding retained_intron MGP_CASTEiJ_T0013966.1 MGP_CASTEiJ_G0012129.1 mouse_genomes_project 4 12472619 12473457 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069074.1 MGP_CASTEiJ_G0028160.1 mouse_genomes_project 4 140161757 140197677 - MGP_CASTEiJ_P0069074 Padi1 protein_coding protein_coding MGP_CASTEiJ_T0068232.1 MGP_CASTEiJ_G0027979.1 mouse_genomes_project 4 128842234 128887824 - MGP_CASTEiJ_P0068232 Zcchc17 protein_coding protein_coding MGP_CASTEiJ_T0068233.1 MGP_CASTEiJ_G0027979.1 mouse_genomes_project 4 128843129 128845579 - Zcchc17 protein_coding processed_transcript MGP_CASTEiJ_T0068234.1 MGP_CASTEiJ_G0027979.1 mouse_genomes_project 4 128843544 128872612 - Zcchc17 protein_coding processed_transcript MGP_CASTEiJ_T0068235.1 MGP_CASTEiJ_G0027979.1 mouse_genomes_project 4 128864858 128866578 - Zcchc17 protein_coding processed_transcript MGP_CASTEiJ_T0068236.1 MGP_CASTEiJ_G0027979.1 mouse_genomes_project 4 128880067 128887797 - Zcchc17 protein_coding retained_intron MGP_CASTEiJ_T0064564.1 MGP_CASTEiJ_G0027188.1 mouse_genomes_project 4 2887630 2918921 + MGP_CASTEiJ_P0064564 Sdcbp protein_coding protein_coding MGP_CASTEiJ_T0064565.1 MGP_CASTEiJ_G0027188.1 mouse_genomes_project 4 2887657 2918292 + MGP_CASTEiJ_P0064565 Sdcbp protein_coding protein_coding MGP_CASTEiJ_T0064566.1 MGP_CASTEiJ_G0027188.1 mouse_genomes_project 4 2887688 2896107 + Sdcbp protein_coding processed_transcript MGP_CASTEiJ_T0064567.1 MGP_CASTEiJ_G0027188.1 mouse_genomes_project 4 2887689 2915751 + MGP_CASTEiJ_P0064567 Sdcbp protein_coding protein_coding MGP_CASTEiJ_T0064568.1 MGP_CASTEiJ_G0027188.1 mouse_genomes_project 4 2887692 2906929 + Sdcbp protein_coding processed_transcript MGP_CASTEiJ_T0064569.1 MGP_CASTEiJ_G0027188.1 mouse_genomes_project 4 2887693 2907764 + MGP_CASTEiJ_P0064569 Sdcbp protein_coding protein_coding MGP_CASTEiJ_T0064570.1 MGP_CASTEiJ_G0027188.1 mouse_genomes_project 4 2887693 2933858 + MGP_CASTEiJ_P0064570 Sdcbp protein_coding protein_coding MGP_CASTEiJ_T0064571.1 MGP_CASTEiJ_G0027188.1 mouse_genomes_project 4 2898818 2915635 + MGP_CASTEiJ_P0064571 Sdcbp protein_coding protein_coding MGP_CASTEiJ_T0067993.1 MGP_CASTEiJ_G0027938.1 mouse_genomes_project 4 127297668 127331220 - MGP_CASTEiJ_P0067993 Azin2 protein_coding protein_coding MGP_CASTEiJ_T0067994.1 MGP_CASTEiJ_G0027938.1 mouse_genomes_project 4 127299447 127331228 - MGP_CASTEiJ_P0067994 Azin2 protein_coding protein_coding MGP_CASTEiJ_T0067995.1 MGP_CASTEiJ_G0027938.1 mouse_genomes_project 4 127299447 127331239 - MGP_CASTEiJ_P0067995 Azin2 protein_coding protein_coding MGP_CASTEiJ_T0067996.1 MGP_CASTEiJ_G0027938.1 mouse_genomes_project 4 127313268 127331239 - Azin2 protein_coding retained_intron MGP_CASTEiJ_T0067997.1 MGP_CASTEiJ_G0027938.1 mouse_genomes_project 4 127313581 127330191 - MGP_CASTEiJ_P0067997 Azin2 protein_coding protein_coding MGP_CASTEiJ_T0067998.1 MGP_CASTEiJ_G0027938.1 mouse_genomes_project 4 127314679 127331242 - Azin2 protein_coding retained_intron MGP_CASTEiJ_T0067999.1 MGP_CASTEiJ_G0027938.1 mouse_genomes_project 4 127329497 127331228 - Azin2 protein_coding retained_intron MGP_CASTEiJ_T0013987.1 MGP_CASTEiJ_G0012150.1 mouse_genomes_project 4 19139379 19139885 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067627.1 MGP_CASTEiJ_G0027847.1 mouse_genomes_project 4 118929093 118979627 - MGP_CASTEiJ_P0067627 Smap2 protein_coding protein_coding MGP_CASTEiJ_T0067628.1 MGP_CASTEiJ_G0027847.1 mouse_genomes_project 4 118932662 118936487 - Smap2 protein_coding processed_transcript MGP_CASTEiJ_T0013970.1 MGP_CASTEiJ_G0012133.1 mouse_genomes_project 4 12856705 12856835 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065310.1 MGP_CASTEiJ_G0027345.1 mouse_genomes_project 4 41165318 41166972 - MGP_CASTEiJ_P0065310 Sit1 protein_coding protein_coding MGP_CASTEiJ_T0065311.1 MGP_CASTEiJ_G0027345.1 mouse_genomes_project 4 41165424 41166460 - Sit1 protein_coding processed_transcript MGP_CASTEiJ_T0010356.1 MGP_CASTEiJ_G0008544.1 mouse_genomes_project 4 155847122 155847205 - Mir429 miRNA miRNA MGP_CASTEiJ_T0011229.1 MGP_CASTEiJ_G0009417.1 mouse_genomes_project 4 31783729 31783834 + Gm23466 misc_RNA misc_RNA MGP_CASTEiJ_T0064642.1 MGP_CASTEiJ_G0027201.1 mouse_genomes_project 4 7745277 7763301 + MGP_CASTEiJ_P0064642 Trp53inp1 protein_coding protein_coding MGP_CASTEiJ_T0064643.1 MGP_CASTEiJ_G0027201.1 mouse_genomes_project 4 7745287 7763301 + Trp53inp1 protein_coding processed_transcript MGP_CASTEiJ_T0064644.1 MGP_CASTEiJ_G0027201.1 mouse_genomes_project 4 7745290 7755247 + Trp53inp1 protein_coding processed_transcript MGP_CASTEiJ_T0064645.1 MGP_CASTEiJ_G0027201.1 mouse_genomes_project 4 7745348 7758704 + MGP_CASTEiJ_P0064645 Trp53inp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064646.1 MGP_CASTEiJ_G0027201.1 mouse_genomes_project 4 7753292 7756871 + Trp53inp1 protein_coding processed_transcript MGP_CASTEiJ_T0067527.1 MGP_CASTEiJ_G0027826.1 mouse_genomes_project 4 117182702 117220659 - Ccdc30 protein_coding retained_intron MGP_CASTEiJ_T0067528.1 MGP_CASTEiJ_G0027826.1 mouse_genomes_project 4 117183653 117276028 - MGP_CASTEiJ_P0067528 Ccdc30 protein_coding protein_coding MGP_CASTEiJ_T0067529.1 MGP_CASTEiJ_G0027826.1 mouse_genomes_project 4 117201647 117214127 - Ccdc30 protein_coding retained_intron MGP_CASTEiJ_T0067530.1 MGP_CASTEiJ_G0027826.1 mouse_genomes_project 4 117213253 117276013 - MGP_CASTEiJ_P0067530 Ccdc30 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067531.1 MGP_CASTEiJ_G0027826.1 mouse_genomes_project 4 117213260 117244806 - MGP_CASTEiJ_P0067531 Ccdc30 protein_coding protein_coding MGP_CASTEiJ_T0067532.1 MGP_CASTEiJ_G0027826.1 mouse_genomes_project 4 117213261 117220452 - Ccdc30 protein_coding processed_transcript MGP_CASTEiJ_T0067533.1 MGP_CASTEiJ_G0027826.1 mouse_genomes_project 4 117214216 117254606 - MGP_CASTEiJ_P0067533 Ccdc30 protein_coding protein_coding MGP_CASTEiJ_T0067534.1 MGP_CASTEiJ_G0027826.1 mouse_genomes_project 4 117220563 117236684 - Ccdc30 protein_coding processed_transcript MGP_CASTEiJ_T0067535.1 MGP_CASTEiJ_G0027826.1 mouse_genomes_project 4 117227221 117244880 - Ccdc30 protein_coding processed_transcript MGP_CASTEiJ_T0067536.1 MGP_CASTEiJ_G0027826.1 mouse_genomes_project 4 117227223 117238647 - Ccdc30 protein_coding retained_intron MGP_CASTEiJ_T0067537.1 MGP_CASTEiJ_G0027826.1 mouse_genomes_project 4 117227231 117244806 - MGP_CASTEiJ_P0067537 Ccdc30 protein_coding protein_coding MGP_CASTEiJ_T0067538.1 MGP_CASTEiJ_G0027826.1 mouse_genomes_project 4 117232912 117244792 - Ccdc30 protein_coding retained_intron MGP_CASTEiJ_T0067539.1 MGP_CASTEiJ_G0027826.1 mouse_genomes_project 4 117253835 117261766 - Ccdc30 protein_coding processed_transcript MGP_CASTEiJ_T0068397.1 MGP_CASTEiJ_G0028009.1 mouse_genomes_project 4 131327091 131344366 - MGP_CASTEiJ_P0068397 Themis2 protein_coding protein_coding MGP_CASTEiJ_T0068846.1 MGP_CASTEiJ_G0028108.1 mouse_genomes_project 4 136288894 136333405 - MGP_CASTEiJ_P0068846 Cdc42 protein_coding protein_coding MGP_CASTEiJ_T0068847.1 MGP_CASTEiJ_G0028108.1 mouse_genomes_project 4 136290965 136333384 - MGP_CASTEiJ_P0068847 Cdc42 protein_coding protein_coding MGP_CASTEiJ_T0066848.1 MGP_CASTEiJ_G0027682.1 mouse_genomes_project 4 106172371 106215098 - MGP_CASTEiJ_P0066848 Zyg11a protein_coding unknown_likely_coding MGP_CASTEiJ_T0066849.1 MGP_CASTEiJ_G0027682.1 mouse_genomes_project 4 106172371 106215098 - MGP_CASTEiJ_P0066849 Zyg11a protein_coding protein_coding MGP_CASTEiJ_T0066850.1 MGP_CASTEiJ_G0027682.1 mouse_genomes_project 4 106172484 106206859 - MGP_CASTEiJ_P0066850 Zyg11a protein_coding unknown_likely_coding MGP_CASTEiJ_T0066851.1 MGP_CASTEiJ_G0027682.1 mouse_genomes_project 4 106172680 106214970 - MGP_CASTEiJ_P0066851 Zyg11a protein_coding protein_coding MGP_CASTEiJ_T0017304.1 MGP_CASTEiJ_G0014863.1 mouse_genomes_project 4 51392608 51409631 - 4930412L05Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017305.1 MGP_CASTEiJ_G0014863.1 mouse_genomes_project 4 51406897 51409928 - 4930412L05Rik processed_transcript processed_transcript MGP_CASTEiJ_T0065206.1 MGP_CASTEiJ_G0027334.1 mouse_genomes_project 4 40621106 40641622 - MGP_CASTEiJ_P0065206 Vcp protein_coding protein_coding MGP_CASTEiJ_T0065207.1 MGP_CASTEiJ_G0027334.1 mouse_genomes_project 4 40625675 40627129 - Vcp protein_coding processed_transcript MGP_CASTEiJ_T0065208.1 MGP_CASTEiJ_G0027334.1 mouse_genomes_project 4 40627563 40630658 - Vcp protein_coding processed_transcript MGP_CASTEiJ_T0065209.1 MGP_CASTEiJ_G0027334.1 mouse_genomes_project 4 40633852 40634876 - Vcp protein_coding processed_transcript MGP_CASTEiJ_T0065210.1 MGP_CASTEiJ_G0027334.1 mouse_genomes_project 4 40634829 40641548 - Vcp protein_coding processed_transcript MGP_CASTEiJ_T0102316.1 MGP_CASTEiJ_G0039041.1 mouse_genomes_project 4 93951728 93967200 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099838.1 MGP_CASTEiJ_G0036751.1 mouse_genomes_project 4 132463182 132463320 - Gm25270 snRNA snRNA MGP_CASTEiJ_T0007683.1 MGP_CASTEiJ_G0006298.1 mouse_genomes_project 4 79036588 79039934 + Gm11412 lincRNA lincRNA MGP_CASTEiJ_T0069046.1 MGP_CASTEiJ_G0028153.1 mouse_genomes_project 4 139218477 139225845 - MGP_CASTEiJ_P0069046 Klhdc7a protein_coding protein_coding MGP_CASTEiJ_T0013979.1 MGP_CASTEiJ_G0012142.1 mouse_genomes_project 4 15761678 15762625 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068490.1 MGP_CASTEiJ_G0028032.1 mouse_genomes_project 4 132311978 132325405 - MGP_CASTEiJ_P0068490 Pigv protein_coding unknown_likely_coding MGP_CASTEiJ_T0068491.1 MGP_CASTEiJ_G0028032.1 mouse_genomes_project 4 132312303 132325709 - MGP_CASTEiJ_P0068491 Pigv protein_coding protein_coding MGP_CASTEiJ_T0068492.1 MGP_CASTEiJ_G0028032.1 mouse_genomes_project 4 132314164 132325709 - MGP_CASTEiJ_P0068492 Pigv protein_coding protein_coding MGP_CASTEiJ_T0068493.1 MGP_CASTEiJ_G0028032.1 mouse_genomes_project 4 132321815 132325709 - Pigv protein_coding processed_transcript MGP_CASTEiJ_T0010325.1 MGP_CASTEiJ_G0008513.1 mouse_genomes_project 4 127689812 127689894 - Gm22994 miRNA miRNA MGP_CASTEiJ_T0066773.1 MGP_CASTEiJ_G0027672.1 mouse_genomes_project 4 105377085 105378528 + Glis1 protein_coding processed_transcript MGP_CASTEiJ_T0066774.1 MGP_CASTEiJ_G0027672.1 mouse_genomes_project 4 105377111 105500976 + MGP_CASTEiJ_P0066774 Glis1 protein_coding protein_coding MGP_CASTEiJ_T0066775.1 MGP_CASTEiJ_G0027672.1 mouse_genomes_project 4 105377130 105579752 + MGP_CASTEiJ_P0066775 Glis1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066776.1 MGP_CASTEiJ_G0027672.1 mouse_genomes_project 4 105377213 105579744 + MGP_CASTEiJ_P0066776 Glis1 protein_coding protein_coding MGP_CASTEiJ_T0066777.1 MGP_CASTEiJ_G0027672.1 mouse_genomes_project 4 105377977 105579752 + MGP_CASTEiJ_P0066777 Glis1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066778.1 MGP_CASTEiJ_G0027672.1 mouse_genomes_project 4 105381504 105579744 + MGP_CASTEiJ_P0066778 Glis1 protein_coding protein_coding MGP_CASTEiJ_T0066779.1 MGP_CASTEiJ_G0027672.1 mouse_genomes_project 4 105522125 105570549 + Glis1 protein_coding processed_transcript MGP_CASTEiJ_T0066780.1 MGP_CASTEiJ_G0027672.1 mouse_genomes_project 4 105558040 105575466 + Glis1 protein_coding processed_transcript MGP_CASTEiJ_T0007700.1 MGP_CASTEiJ_G0006313.1 mouse_genomes_project 4 90107413 90126964 + Gm12637 lincRNA lincRNA MGP_CASTEiJ_T0004310.1 MGP_CASTEiJ_G0003762.1 mouse_genomes_project 4 36959198 37020846 - Gm17094 antisense antisense MGP_CASTEiJ_T0001361.1 MGP_CASTEiJ_G0001291.1 mouse_genomes_project 4 96965548 96968023 + TEC TEC MGP_CASTEiJ_T0014007.1 MGP_CASTEiJ_G0012170.1 mouse_genomes_project 4 25006353 25007374 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007677.1 MGP_CASTEiJ_G0006292.1 mouse_genomes_project 4 61038148 61046391 + Gm11216 lincRNA lincRNA MGP_CASTEiJ_T0065384.1 MGP_CASTEiJ_G0027357.1 mouse_genomes_project 4 41354989 41357245 - Hint2 protein_coding processed_transcript MGP_CASTEiJ_T0065385.1 MGP_CASTEiJ_G0027357.1 mouse_genomes_project 4 41354989 41357240 - Hint2 protein_coding processed_transcript MGP_CASTEiJ_T0065386.1 MGP_CASTEiJ_G0027357.1 mouse_genomes_project 4 41354990 41355727 - Hint2 protein_coding processed_transcript MGP_CASTEiJ_T0065387.1 MGP_CASTEiJ_G0027357.1 mouse_genomes_project 4 41354991 41355490 - Hint2 protein_coding processed_transcript MGP_CASTEiJ_T0065388.1 MGP_CASTEiJ_G0027357.1 mouse_genomes_project 4 41354991 41357263 - MGP_CASTEiJ_P0065388 Hint2 protein_coding protein_coding MGP_CASTEiJ_T0065389.1 MGP_CASTEiJ_G0027357.1 mouse_genomes_project 4 41354992 41357245 - Hint2 protein_coding processed_transcript MGP_CASTEiJ_T0065390.1 MGP_CASTEiJ_G0027357.1 mouse_genomes_project 4 41355436 41356541 - Hint2 protein_coding processed_transcript MGP_CASTEiJ_T0067949.1 MGP_CASTEiJ_G0027924.1 mouse_genomes_project 4 125504433 125508486 + MGP_CASTEiJ_P0067949 Smim12 protein_coding protein_coding MGP_CASTEiJ_T0068803.1 MGP_CASTEiJ_G0028095.1 mouse_genomes_project 4 135341440 135363515 + MGP_CASTEiJ_P0068803 Htr1d protein_coding protein_coding MGP_CASTEiJ_T0068804.1 MGP_CASTEiJ_G0028095.1 mouse_genomes_project 4 135341442 135362879 + MGP_CASTEiJ_P0068804 Htr1d protein_coding protein_coding MGP_CASTEiJ_T0068805.1 MGP_CASTEiJ_G0028095.1 mouse_genomes_project 4 135341446 135362879 + MGP_CASTEiJ_P0068805 Htr1d protein_coding protein_coding MGP_CASTEiJ_T0068806.1 MGP_CASTEiJ_G0028095.1 mouse_genomes_project 4 135342536 135361085 + Htr1d protein_coding processed_transcript MGP_CASTEiJ_T0007835.1 MGP_CASTEiJ_G0006414.1 mouse_genomes_project 4 153574421 153575707 + Gm13115 lincRNA lincRNA MGP_CASTEiJ_T0066940.1 MGP_CASTEiJ_G0027700.1 mouse_genomes_project 4 107266440 107303861 + MGP_CASTEiJ_P0066940 Calr4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066941.1 MGP_CASTEiJ_G0027700.1 mouse_genomes_project 4 107266484 107303730 + MGP_CASTEiJ_P0066941 Calr4 protein_coding protein_coding MGP_CASTEiJ_T0066942.1 MGP_CASTEiJ_G0027700.1 mouse_genomes_project 4 107283651 107303980 + MGP_CASTEiJ_P0066942 Calr4 protein_coding protein_coding MGP_CASTEiJ_T0066943.1 MGP_CASTEiJ_G0027700.1 mouse_genomes_project 4 107292575 107303552 + Calr4 protein_coding processed_transcript MGP_CASTEiJ_T0010342.1 MGP_CASTEiJ_G0008530.1 mouse_genomes_project 4 137220731 137220811 + Mir6399 miRNA miRNA MGP_CASTEiJ_T0065141.1 MGP_CASTEiJ_G0027321.1 mouse_genomes_project 4 39317103 39376211 - MGP_CASTEiJ_P0065141 Cntfr protein_coding protein_coding MGP_CASTEiJ_T0065142.1 MGP_CASTEiJ_G0027321.1 mouse_genomes_project 4 39317103 39377829 - MGP_CASTEiJ_P0065142 Cntfr protein_coding protein_coding MGP_CASTEiJ_T0065143.1 MGP_CASTEiJ_G0027321.1 mouse_genomes_project 4 39317639 39376156 - MGP_CASTEiJ_P0065143 Cntfr protein_coding unknown_likely_coding MGP_CASTEiJ_T0065144.1 MGP_CASTEiJ_G0027321.1 mouse_genomes_project 4 39322818 39323585 - Cntfr protein_coding processed_transcript MGP_CASTEiJ_T0065145.1 MGP_CASTEiJ_G0027321.1 mouse_genomes_project 4 39330788 39377878 - MGP_CASTEiJ_P0065145 Cntfr protein_coding protein_coding MGP_CASTEiJ_T0065146.1 MGP_CASTEiJ_G0027321.1 mouse_genomes_project 4 39330788 39376214 - MGP_CASTEiJ_P0065146 Cntfr protein_coding protein_coding MGP_CASTEiJ_T0065147.1 MGP_CASTEiJ_G0027321.1 mouse_genomes_project 4 39332096 39376704 - MGP_CASTEiJ_P0065147 Cntfr protein_coding protein_coding MGP_CASTEiJ_T0066139.1 MGP_CASTEiJ_G0027538.1 mouse_genomes_project 4 80167867 80297884 - MGP_CASTEiJ_P0066139 Frem1 protein_coding protein_coding MGP_CASTEiJ_T0066140.1 MGP_CASTEiJ_G0027538.1 mouse_genomes_project 4 80167867 80332409 - MGP_CASTEiJ_P0066140 Frem1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066141.1 MGP_CASTEiJ_G0027538.1 mouse_genomes_project 4 80170505 80185239 - Frem1 protein_coding processed_transcript MGP_CASTEiJ_T0066142.1 MGP_CASTEiJ_G0027538.1 mouse_genomes_project 4 80186437 80195604 - Frem1 protein_coding retained_intron MGP_CASTEiJ_T0066143.1 MGP_CASTEiJ_G0027538.1 mouse_genomes_project 4 80207123 80211888 - Frem1 protein_coding retained_intron MGP_CASTEiJ_T0066144.1 MGP_CASTEiJ_G0027538.1 mouse_genomes_project 4 80209444 80243693 - MGP_CASTEiJ_P0066144 Frem1 protein_coding protein_coding MGP_CASTEiJ_T0066145.1 MGP_CASTEiJ_G0027538.1 mouse_genomes_project 4 80267976 80332592 - Frem1 protein_coding processed_transcript MGP_CASTEiJ_T0069452.1 MGP_CASTEiJ_G0028253.1 mouse_genomes_project 4 148583367 148692057 - MGP_CASTEiJ_P0069452 Ube4b protein_coding protein_coding MGP_CASTEiJ_T0069453.1 MGP_CASTEiJ_G0028253.1 mouse_genomes_project 4 148583373 148590139 - MGP_CASTEiJ_P0069453 Ube4b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069454.1 MGP_CASTEiJ_G0028253.1 mouse_genomes_project 4 148584445 148586784 - Ube4b protein_coding processed_transcript MGP_CASTEiJ_T0069455.1 MGP_CASTEiJ_G0028253.1 mouse_genomes_project 4 148584622 148691213 - MGP_CASTEiJ_P0069455 Ube4b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069456.1 MGP_CASTEiJ_G0028253.1 mouse_genomes_project 4 148584622 148691213 - MGP_CASTEiJ_P0069456 Ube4b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069457.1 MGP_CASTEiJ_G0028253.1 mouse_genomes_project 4 148590226 148591133 - Ube4b protein_coding processed_transcript MGP_CASTEiJ_T0069458.1 MGP_CASTEiJ_G0028253.1 mouse_genomes_project 4 148607230 148608214 - Ube4b protein_coding retained_intron MGP_CASTEiJ_T0069459.1 MGP_CASTEiJ_G0028253.1 mouse_genomes_project 4 148621956 148691939 - Ube4b protein_coding retained_intron MGP_CASTEiJ_T0069460.1 MGP_CASTEiJ_G0028253.1 mouse_genomes_project 4 148643223 148691908 - Ube4b protein_coding processed_transcript MGP_CASTEiJ_T0069461.1 MGP_CASTEiJ_G0028253.1 mouse_genomes_project 4 148645185 148645769 - Ube4b protein_coding processed_transcript MGP_CASTEiJ_T0069462.1 MGP_CASTEiJ_G0028253.1 mouse_genomes_project 4 148660288 148691524 - Ube4b protein_coding retained_intron MGP_CASTEiJ_T0069463.1 MGP_CASTEiJ_G0028253.1 mouse_genomes_project 4 148660300 148661176 - Ube4b protein_coding processed_transcript MGP_CASTEiJ_T0099835.1 MGP_CASTEiJ_G0036748.1 mouse_genomes_project 4 130969727 130969821 + Gm23055 snRNA snRNA MGP_CASTEiJ_T0014130.1 MGP_CASTEiJ_G0012293.1 mouse_genomes_project 4 71362796 71364328 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007651.1 MGP_CASTEiJ_G0006272.1 mouse_genomes_project 4 46913368 46986039 + lincRNA lincRNA MGP_CASTEiJ_T0066721.1 MGP_CASTEiJ_G0027664.1 mouse_genomes_project 4 105047084 105094606 - MGP_CASTEiJ_P0066721 Tceanc2 protein_coding protein_coding MGP_CASTEiJ_T0066722.1 MGP_CASTEiJ_G0027664.1 mouse_genomes_project 4 105053198 105094318 - MGP_CASTEiJ_P0066722 Tceanc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066723.1 MGP_CASTEiJ_G0027664.1 mouse_genomes_project 4 105053500 105094425 - MGP_CASTEiJ_P0066723 Tceanc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066724.1 MGP_CASTEiJ_G0027664.1 mouse_genomes_project 4 105053555 105094342 - Tceanc2 protein_coding processed_transcript MGP_CASTEiJ_T0066725.1 MGP_CASTEiJ_G0027664.1 mouse_genomes_project 4 105053763 105095156 - MGP_CASTEiJ_P0066725 Tceanc2 protein_coding protein_coding MGP_CASTEiJ_T0066726.1 MGP_CASTEiJ_G0027664.1 mouse_genomes_project 4 105053807 105094341 - MGP_CASTEiJ_P0066726 Tceanc2 protein_coding protein_coding MGP_CASTEiJ_T0066727.1 MGP_CASTEiJ_G0027664.1 mouse_genomes_project 4 105053927 105095169 - MGP_CASTEiJ_P0066727 Tceanc2 protein_coding protein_coding MGP_CASTEiJ_T0066728.1 MGP_CASTEiJ_G0027664.1 mouse_genomes_project 4 105081689 105093910 - Tceanc2 protein_coding processed_transcript MGP_CASTEiJ_T0066729.1 MGP_CASTEiJ_G0027664.1 mouse_genomes_project 4 105089066 105094267 - Tceanc2 protein_coding processed_transcript MGP_CASTEiJ_T0066730.1 MGP_CASTEiJ_G0027664.1 mouse_genomes_project 4 105092673 105093727 - Tceanc2 protein_coding processed_transcript MGP_CASTEiJ_T0068989.1 MGP_CASTEiJ_G0028140.1 mouse_genomes_project 4 138248215 138258843 - MGP_CASTEiJ_P0068989 Nbl1 protein_coding protein_coding MGP_CASTEiJ_T0068990.1 MGP_CASTEiJ_G0028140.1 mouse_genomes_project 4 138249138 138257956 - Nbl1 protein_coding processed_transcript MGP_CASTEiJ_T0068991.1 MGP_CASTEiJ_G0028140.1 mouse_genomes_project 4 138257925 138258818 - Nbl1 protein_coding processed_transcript MGP_CASTEiJ_T0069188.1 MGP_CASTEiJ_G0028183.1 mouse_genomes_project 4 141060067 141099037 - MGP_CASTEiJ_P0069188 Plekhm2 protein_coding protein_coding MGP_CASTEiJ_T0069189.1 MGP_CASTEiJ_G0028183.1 mouse_genomes_project 4 141060067 141099818 - MGP_CASTEiJ_P0069189 Plekhm2 protein_coding protein_coding MGP_CASTEiJ_T0069190.1 MGP_CASTEiJ_G0028183.1 mouse_genomes_project 4 141062600 141063799 - Plekhm2 protein_coding retained_intron MGP_CASTEiJ_T0069191.1 MGP_CASTEiJ_G0028183.1 mouse_genomes_project 4 141064709 141065310 - Plekhm2 protein_coding retained_intron MGP_CASTEiJ_T0069192.1 MGP_CASTEiJ_G0028183.1 mouse_genomes_project 4 141066744 141075558 - Plekhm2 protein_coding retained_intron MGP_CASTEiJ_T0069193.1 MGP_CASTEiJ_G0028183.1 mouse_genomes_project 4 141074691 141076123 - Plekhm2 protein_coding retained_intron MGP_CASTEiJ_T0014070.1 MGP_CASTEiJ_G0012233.1 mouse_genomes_project 4 47390434 47390765 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067681.1 MGP_CASTEiJ_G0027865.1 mouse_genomes_project 4 121132633 121147449 + MGP_CASTEiJ_P0067681 Nt5c1a protein_coding protein_coding MGP_CASTEiJ_T0014074.1 MGP_CASTEiJ_G0012237.1 mouse_genomes_project 4 47801590 47802108 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017278.1 MGP_CASTEiJ_G0014847.1 mouse_genomes_project 4 703477 745635 + A830012C17Rik processed_transcript processed_transcript MGP_CASTEiJ_T0065894.1 MGP_CASTEiJ_G0027479.1 mouse_genomes_project 4 58323518 58430637 + MGP_CASTEiJ_P0065894 Snx30 protein_coding protein_coding MGP_CASTEiJ_T0065895.1 MGP_CASTEiJ_G0027479.1 mouse_genomes_project 4 58323558 58353838 + Snx30 protein_coding processed_transcript MGP_CASTEiJ_T0065896.1 MGP_CASTEiJ_G0027479.1 mouse_genomes_project 4 58409157 58426414 + Snx30 protein_coding processed_transcript MGP_CASTEiJ_T0065897.1 MGP_CASTEiJ_G0027479.1 mouse_genomes_project 4 58409243 58420278 + Snx30 protein_coding processed_transcript MGP_CASTEiJ_T0014338.1 MGP_CASTEiJ_G0012501.1 mouse_genomes_project 4 153712704 153713476 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069317.1 MGP_CASTEiJ_G0028230.1 mouse_genomes_project 4 147161966 147179922 + MGP_CASTEiJ_P0069317 Mthfr protein_coding protein_coding MGP_CASTEiJ_T0069318.1 MGP_CASTEiJ_G0028230.1 mouse_genomes_project 4 147162048 147168283 + MGP_CASTEiJ_P0069318 Mthfr protein_coding protein_coding MGP_CASTEiJ_T0069319.1 MGP_CASTEiJ_G0028230.1 mouse_genomes_project 4 147163699 147167176 + Mthfr protein_coding retained_intron MGP_CASTEiJ_T0069320.1 MGP_CASTEiJ_G0028230.1 mouse_genomes_project 4 147164080 147183289 + MGP_CASTEiJ_P0069320 Mthfr protein_coding protein_coding MGP_CASTEiJ_T0069321.1 MGP_CASTEiJ_G0028230.1 mouse_genomes_project 4 147164176 147183289 + MGP_CASTEiJ_P0069321 Mthfr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069322.1 MGP_CASTEiJ_G0028230.1 mouse_genomes_project 4 147164491 147167684 + Mthfr protein_coding retained_intron MGP_CASTEiJ_T0069323.1 MGP_CASTEiJ_G0028230.1 mouse_genomes_project 4 147176454 147183286 + MGP_CASTEiJ_P0069323 Mthfr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0014212.1 MGP_CASTEiJ_G0012375.1 mouse_genomes_project 4 102777200 102777468 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004355.1 MGP_CASTEiJ_G0003796.1 mouse_genomes_project 4 95946332 95947792 + 0610025J13Rik antisense antisense MGP_CASTEiJ_T0004356.1 MGP_CASTEiJ_G0003796.1 mouse_genomes_project 4 95946382 95956588 + 0610025J13Rik antisense antisense MGP_CASTEiJ_T0004357.1 MGP_CASTEiJ_G0003796.1 mouse_genomes_project 4 95946382 95956588 + 0610025J13Rik antisense antisense MGP_CASTEiJ_T0014058.1 MGP_CASTEiJ_G0012221.1 mouse_genomes_project 4 42133319 42133735 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099802.1 MGP_CASTEiJ_G0036715.1 mouse_genomes_project 4 91233305 91233412 + Gm24796 snRNA snRNA MGP_CASTEiJ_T0067577.1 MGP_CASTEiJ_G0027835.1 mouse_genomes_project 4 118059289 118065418 + MGP_CASTEiJ_P0067577 Edn2 protein_coding protein_coding MGP_CASTEiJ_T0007788.1 MGP_CASTEiJ_G0006377.1 mouse_genomes_project 4 130764390 130764548 + Gm28872 lincRNA lincRNA MGP_CASTEiJ_T0014199.1 MGP_CASTEiJ_G0012362.1 mouse_genomes_project 4 97226822 97227229 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101027.1 MGP_CASTEiJ_G0037940.1 mouse_genomes_project 4 30974776 30974901 - Gm24341 snoRNA snoRNA MGP_CASTEiJ_T0065983.1 MGP_CASTEiJ_G0027501.1 mouse_genomes_project 4 60268735 60272152 + MGP_CASTEiJ_P0065983 Orm2 protein_coding protein_coding MGP_CASTEiJ_T0004410.1 MGP_CASTEiJ_G0003839.1 mouse_genomes_project 4 127303415 127307706 + Gm15904 antisense antisense MGP_CASTEiJ_T0098939.1 MGP_CASTEiJ_G0035863.1 mouse_genomes_project 4 57599871 57602263 - Gm12594 sense_intronic sense_intronic MGP_CASTEiJ_T0067348.1 MGP_CASTEiJ_G0027784.1 mouse_genomes_project 4 115475143 115484127 - MGP_CASTEiJ_P0067348 Klf17 protein_coding protein_coding MGP_CASTEiJ_T0064562.1 MGP_CASTEiJ_G0027187.1 mouse_genomes_project 4 2788385 2798441 - MGP_CASTEiJ_P0064562 Cyp7a1 protein_coding protein_coding MGP_CASTEiJ_T0064563.1 MGP_CASTEiJ_G0027187.1 mouse_genomes_project 4 2795769 2798443 - Cyp7a1 protein_coding processed_transcript MGP_CASTEiJ_T0001376.1 MGP_CASTEiJ_G0001305.1 mouse_genomes_project 4 144529961 144531655 - TEC TEC MGP_CASTEiJ_T0099785.1 MGP_CASTEiJ_G0036698.1 mouse_genomes_project 4 38987987 38988091 - Gm26084 snRNA snRNA MGP_CASTEiJ_T0065817.1 MGP_CASTEiJ_G0027461.1 mouse_genomes_project 4 56395868 56421290 - Txndc8 protein_coding processed_transcript MGP_CASTEiJ_T0065818.1 MGP_CASTEiJ_G0027461.1 mouse_genomes_project 4 56395868 56421389 - MGP_CASTEiJ_P0065818 Txndc8 protein_coding protein_coding MGP_CASTEiJ_T0065819.1 MGP_CASTEiJ_G0027461.1 mouse_genomes_project 4 56395870 56412562 - MGP_CASTEiJ_P0065819 Txndc8 protein_coding protein_coding MGP_CASTEiJ_T0007619.1 MGP_CASTEiJ_G0006242.1 mouse_genomes_project 4 10906779 10921549 - 1700120G11Rik lincRNA lincRNA MGP_CASTEiJ_T0065592.1 MGP_CASTEiJ_G0027400.1 mouse_genomes_project 4 44429958 44461664 - MGP_CASTEiJ_P0065592 Coro2a protein_coding protein_coding MGP_CASTEiJ_T0065593.1 MGP_CASTEiJ_G0027400.1 mouse_genomes_project 4 44429964 44493227 - MGP_CASTEiJ_P0065593 Coro2a protein_coding protein_coding MGP_CASTEiJ_T0065594.1 MGP_CASTEiJ_G0027400.1 mouse_genomes_project 4 44429964 44461682 - MGP_CASTEiJ_P0065594 Coro2a protein_coding protein_coding MGP_CASTEiJ_T0065595.1 MGP_CASTEiJ_G0027400.1 mouse_genomes_project 4 44436253 44492916 - Coro2a protein_coding retained_intron MGP_CASTEiJ_T0066397.1 MGP_CASTEiJ_G0027597.1 mouse_genomes_project 4 94018602 94073162 - MGP_CASTEiJ_P0066397 Cyp2j8 protein_coding protein_coding MGP_CASTEiJ_T0001378.1 MGP_CASTEiJ_G0001307.1 mouse_genomes_project 4 151413142 151413563 - TEC TEC MGP_CASTEiJ_T0067745.1 MGP_CASTEiJ_G0027883.1 mouse_genomes_project 4 122868723 122919464 + MGP_CASTEiJ_P0067745 Mtf1 protein_coding protein_coding MGP_CASTEiJ_T0067746.1 MGP_CASTEiJ_G0027883.1 mouse_genomes_project 4 122869168 122888682 + MGP_CASTEiJ_P0067746 Mtf1 protein_coding protein_coding MGP_CASTEiJ_T0067747.1 MGP_CASTEiJ_G0027883.1 mouse_genomes_project 4 122869168 122919885 + MGP_CASTEiJ_P0067747 Mtf1 protein_coding protein_coding MGP_CASTEiJ_T0067748.1 MGP_CASTEiJ_G0027883.1 mouse_genomes_project 4 122869201 122873742 + Mtf1 protein_coding retained_intron MGP_CASTEiJ_T0067749.1 MGP_CASTEiJ_G0027883.1 mouse_genomes_project 4 122869297 122873104 + MGP_CASTEiJ_P0067749 Mtf1 protein_coding protein_coding MGP_CASTEiJ_T0069251.1 MGP_CASTEiJ_G0028203.1 mouse_genomes_project 4 143777007 143782334 - MGP_CASTEiJ_P0069251 protein_coding protein_coding MGP_CASTEiJ_T0014091.1 MGP_CASTEiJ_G0012254.1 mouse_genomes_project 4 53404003 53404612 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007652.1 MGP_CASTEiJ_G0006273.1 mouse_genomes_project 4 50105148 50199007 - C630028M04Rik lincRNA lincRNA MGP_CASTEiJ_T0069327.1 MGP_CASTEiJ_G0028232.1 mouse_genomes_project 4 147234007 147261824 - MGP_CASTEiJ_P0069327 Draxin protein_coding unknown_likely_coding MGP_CASTEiJ_T0066293.1 MGP_CASTEiJ_G0027570.1 mouse_genomes_project 4 86297081 86297656 + MGP_CASTEiJ_P0066293 protein_coding protein_coding MGP_CASTEiJ_T0101096.1 MGP_CASTEiJ_G0038009.1 mouse_genomes_project 4 132863140 132863228 - Gm27619 snoRNA snoRNA MGP_CASTEiJ_T0004337.1 MGP_CASTEiJ_G0003786.1 mouse_genomes_project 4 69261073 69261756 + Gm11250 antisense antisense MGP_CASTEiJ_T0064513.1 MGP_CASTEiJ_G0027175.1 mouse_genomes_project 4 48205 89738 + MGP_CASTEiJ_P0064513 Tgs1 protein_coding protein_coding MGP_CASTEiJ_T0064514.1 MGP_CASTEiJ_G0027175.1 mouse_genomes_project 4 48280 57241 + Tgs1 protein_coding retained_intron MGP_CASTEiJ_T0064515.1 MGP_CASTEiJ_G0027175.1 mouse_genomes_project 4 66904 71973 + Tgs1 protein_coding processed_transcript MGP_CASTEiJ_T0064516.1 MGP_CASTEiJ_G0027175.1 mouse_genomes_project 4 71920 75575 + Tgs1 protein_coding retained_intron MGP_CASTEiJ_T0064517.1 MGP_CASTEiJ_G0027175.1 mouse_genomes_project 4 78654 87666 + Tgs1 protein_coding retained_intron MGP_CASTEiJ_T0014340.1 MGP_CASTEiJ_G0012503.1 mouse_genomes_project 4 153908224 153908697 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065854.1 MGP_CASTEiJ_G0027467.1 mouse_genomes_project 4 57390621 57406927 + MGP_CASTEiJ_P0065854 Zkscan16 protein_coding protein_coding MGP_CASTEiJ_T0068979.1 MGP_CASTEiJ_G0028136.1 mouse_genomes_project 4 138032272 138056916 - MGP_CASTEiJ_P0068979 Otud3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068980.1 MGP_CASTEiJ_G0028136.1 mouse_genomes_project 4 138032272 138056918 - MGP_CASTEiJ_P0068980 Otud3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014100.1 MGP_CASTEiJ_G0012263.1 mouse_genomes_project 4 55829783 55831774 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068593.1 MGP_CASTEiJ_G0028049.1 mouse_genomes_project 4 132955047 132958156 + MGP_CASTEiJ_P0068593 Gm30191 protein_coding protein_coding MGP_CASTEiJ_T0067732.1 MGP_CASTEiJ_G0027880.1 mouse_genomes_project 4 122759450 122766598 + MGP_CASTEiJ_P0067732 Fhl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067733.1 MGP_CASTEiJ_G0027880.1 mouse_genomes_project 4 122759484 122767352 + MGP_CASTEiJ_P0067733 Fhl3 protein_coding protein_coding MGP_CASTEiJ_T0101091.1 MGP_CASTEiJ_G0038004.1 mouse_genomes_project 4 130817266 130817395 + Snora44 snoRNA snoRNA MGP_CASTEiJ_T0068324.1 MGP_CASTEiJ_G0027995.1 mouse_genomes_project 4 130770446 130797174 + MGP_CASTEiJ_P0068324 Taf12 protein_coding protein_coding MGP_CASTEiJ_T0068325.1 MGP_CASTEiJ_G0027995.1 mouse_genomes_project 4 130770484 130772861 + Taf12 protein_coding processed_transcript MGP_CASTEiJ_T0068326.1 MGP_CASTEiJ_G0027995.1 mouse_genomes_project 4 130770487 130793544 + MGP_CASTEiJ_P0068326 Taf12 protein_coding protein_coding MGP_CASTEiJ_T0014231.1 MGP_CASTEiJ_G0012394.1 mouse_genomes_project 4 107810478 107810882 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067521.1 MGP_CASTEiJ_G0027825.1 mouse_genomes_project 4 117157974 117180288 - MGP_CASTEiJ_P0067521 Ppih protein_coding protein_coding MGP_CASTEiJ_T0067522.1 MGP_CASTEiJ_G0027825.1 mouse_genomes_project 4 117157974 117180275 - MGP_CASTEiJ_P0067522 Ppih protein_coding protein_coding MGP_CASTEiJ_T0067523.1 MGP_CASTEiJ_G0027825.1 mouse_genomes_project 4 117157974 117180337 - MGP_CASTEiJ_P0067523 Ppih protein_coding protein_coding MGP_CASTEiJ_T0067524.1 MGP_CASTEiJ_G0027825.1 mouse_genomes_project 4 117164506 117180208 - MGP_CASTEiJ_P0067524 Ppih protein_coding protein_coding MGP_CASTEiJ_T0067525.1 MGP_CASTEiJ_G0027825.1 mouse_genomes_project 4 117165078 117180275 - MGP_CASTEiJ_P0067525 Ppih protein_coding protein_coding MGP_CASTEiJ_T0067526.1 MGP_CASTEiJ_G0027825.1 mouse_genomes_project 4 117169991 117180290 - MGP_CASTEiJ_P0067526 Ppih protein_coding protein_coding MGP_CASTEiJ_T0014213.1 MGP_CASTEiJ_G0012376.1 mouse_genomes_project 4 103196101 103196592 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067024.1 MGP_CASTEiJ_G0027714.1 mouse_genomes_project 4 110000121 110012548 + protein_coding processed_transcript MGP_CASTEiJ_T0067025.1 MGP_CASTEiJ_G0027714.1 mouse_genomes_project 4 110000127 110017029 + MGP_CASTEiJ_P0067025 protein_coding protein_coding MGP_CASTEiJ_T0067026.1 MGP_CASTEiJ_G0027714.1 mouse_genomes_project 4 110000222 110015256 + protein_coding retained_intron MGP_CASTEiJ_T0067027.1 MGP_CASTEiJ_G0027714.1 mouse_genomes_project 4 110011013 110026905 + MGP_CASTEiJ_P0067027 protein_coding protein_coding MGP_CASTEiJ_T0013975.1 MGP_CASTEiJ_G0012138.1 mouse_genomes_project 4 14788218 14789228 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069038.1 MGP_CASTEiJ_G0028150.1 mouse_genomes_project 4 138833625 138860580 + MGP_CASTEiJ_P0069038 Aldh4a1 protein_coding protein_coding MGP_CASTEiJ_T0069039.1 MGP_CASTEiJ_G0028150.1 mouse_genomes_project 4 138833653 138860577 + Aldh4a1 protein_coding processed_transcript MGP_CASTEiJ_T0069040.1 MGP_CASTEiJ_G0028150.1 mouse_genomes_project 4 138833868 138846341 + Aldh4a1 protein_coding processed_transcript MGP_CASTEiJ_T0064699.1 MGP_CASTEiJ_G0027212.1 mouse_genomes_project 4 8625858 8627570 - MGP_CASTEiJ_P0064699 Gm10604 protein_coding protein_coding MGP_CASTEiJ_T0099794.1 MGP_CASTEiJ_G0036707.1 mouse_genomes_project 4 60566238 60566345 - Gm24234 snRNA snRNA MGP_CASTEiJ_T0065014.1 MGP_CASTEiJ_G0027290.1 mouse_genomes_project 4 32529943 32531822 + MGP_CASTEiJ_P0065014 Ifnk protein_coding protein_coding MGP_CASTEiJ_T0064829.1 MGP_CASTEiJ_G0027249.1 mouse_genomes_project 4 18761988 18825290 + Faxc protein_coding processed_transcript MGP_CASTEiJ_T0064830.1 MGP_CASTEiJ_G0027249.1 mouse_genomes_project 4 18761990 18825896 + MGP_CASTEiJ_P0064830 Faxc protein_coding protein_coding MGP_CASTEiJ_T0064831.1 MGP_CASTEiJ_G0027249.1 mouse_genomes_project 4 18761992 18779922 + Faxc protein_coding processed_transcript MGP_CASTEiJ_T0064832.1 MGP_CASTEiJ_G0027249.1 mouse_genomes_project 4 18762016 18827989 + Faxc protein_coding processed_transcript MGP_CASTEiJ_T0064833.1 MGP_CASTEiJ_G0027249.1 mouse_genomes_project 4 18762130 18797587 + MGP_CASTEiJ_P0064833 Faxc protein_coding unknown_likely_coding MGP_CASTEiJ_T0064834.1 MGP_CASTEiJ_G0027249.1 mouse_genomes_project 4 18790101 18792432 + Faxc protein_coding processed_transcript MGP_CASTEiJ_T0099783.1 MGP_CASTEiJ_G0036696.1 mouse_genomes_project 4 38800171 38800274 - Gm24650 snRNA snRNA MGP_CASTEiJ_T0070084.1 MGP_CASTEiJ_G0028357.1 mouse_genomes_project 4 155805469 155808296 + MGP_CASTEiJ_P0070084 Tnfrsf4 protein_coding protein_coding MGP_CASTEiJ_T0070085.1 MGP_CASTEiJ_G0028357.1 mouse_genomes_project 4 155805482 155808283 + Tnfrsf4 protein_coding processed_transcript MGP_CASTEiJ_T0070086.1 MGP_CASTEiJ_G0028357.1 mouse_genomes_project 4 155805875 155806885 + Tnfrsf4 protein_coding processed_transcript MGP_CASTEiJ_T0098603.1 MGP_CASTEiJ_G0035534.1 mouse_genomes_project 4 92670411 92670525 + n-R5s189 rRNA rRNA MGP_CASTEiJ_T0069123.1 MGP_CASTEiJ_G0028169.1 mouse_genomes_project 4 140523138 140581945 + MGP_CASTEiJ_P0069123 Fbxo42 protein_coding protein_coding MGP_CASTEiJ_T0069124.1 MGP_CASTEiJ_G0028169.1 mouse_genomes_project 4 140523147 140573199 + Fbxo42 protein_coding processed_transcript MGP_CASTEiJ_T0014245.1 MGP_CASTEiJ_G0012408.1 mouse_genomes_project 4 114514033 114514480 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065551.1 MGP_CASTEiJ_G0027391.1 mouse_genomes_project 4 43984626 44014175 - MGP_CASTEiJ_P0065551 Tstd2 protein_coding protein_coding MGP_CASTEiJ_T0065552.1 MGP_CASTEiJ_G0027391.1 mouse_genomes_project 4 43984628 44014375 - MGP_CASTEiJ_P0065552 Tstd2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065553.1 MGP_CASTEiJ_G0027391.1 mouse_genomes_project 4 43988101 44014140 - MGP_CASTEiJ_P0065553 Tstd2 protein_coding protein_coding MGP_CASTEiJ_T0065554.1 MGP_CASTEiJ_G0027391.1 mouse_genomes_project 4 43989396 44014145 - MGP_CASTEiJ_P0065554 Tstd2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065555.1 MGP_CASTEiJ_G0027391.1 mouse_genomes_project 4 43997427 44014115 - Tstd2 protein_coding retained_intron MGP_CASTEiJ_T0065556.1 MGP_CASTEiJ_G0027391.1 mouse_genomes_project 4 44002765 44007608 - Tstd2 protein_coding retained_intron MGP_CASTEiJ_T0065557.1 MGP_CASTEiJ_G0027391.1 mouse_genomes_project 4 44007618 44014394 - MGP_CASTEiJ_P0065557 Tstd2 protein_coding protein_coding MGP_CASTEiJ_T0065558.1 MGP_CASTEiJ_G0027391.1 mouse_genomes_project 4 44007681 44014111 - MGP_CASTEiJ_P0065558 Tstd2 protein_coding protein_coding MGP_CASTEiJ_T0065559.1 MGP_CASTEiJ_G0027391.1 mouse_genomes_project 4 44007830 44011461 - MGP_CASTEiJ_P0065559 Tstd2 protein_coding protein_coding MGP_CASTEiJ_T0065560.1 MGP_CASTEiJ_G0027391.1 mouse_genomes_project 4 44011184 44014157 - MGP_CASTEiJ_P0065560 Tstd2 protein_coding protein_coding MGP_CASTEiJ_T0014064.1 MGP_CASTEiJ_G0012227.1 mouse_genomes_project 4 44302676 44302999 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004297.1 MGP_CASTEiJ_G0003753.1 mouse_genomes_project 4 8682918 8696446 + Gm11842 antisense antisense MGP_CASTEiJ_T0014056.1 MGP_CASTEiJ_G0012219.1 mouse_genomes_project 4 41503806 41505171 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064647.1 MGP_CASTEiJ_G0027202.1 mouse_genomes_project 4 7781388 7784143 + Ccne2 protein_coding processed_transcript MGP_CASTEiJ_T0064648.1 MGP_CASTEiJ_G0027202.1 mouse_genomes_project 4 7781391 7794788 + MGP_CASTEiJ_P0064648 Ccne2 protein_coding protein_coding MGP_CASTEiJ_T0064649.1 MGP_CASTEiJ_G0027202.1 mouse_genomes_project 4 7781746 7785337 + Ccne2 protein_coding processed_transcript MGP_CASTEiJ_T0064650.1 MGP_CASTEiJ_G0027202.1 mouse_genomes_project 4 7781763 7794892 + MGP_CASTEiJ_P0064650 Ccne2 protein_coding protein_coding MGP_CASTEiJ_T0064651.1 MGP_CASTEiJ_G0027202.1 mouse_genomes_project 4 7781767 7794795 + MGP_CASTEiJ_P0064651 Ccne2 protein_coding protein_coding MGP_CASTEiJ_T0064652.1 MGP_CASTEiJ_G0027202.1 mouse_genomes_project 4 7781773 7785219 + Ccne2 protein_coding processed_transcript MGP_CASTEiJ_T0064653.1 MGP_CASTEiJ_G0027202.1 mouse_genomes_project 4 7782633 7783272 + Ccne2 protein_coding processed_transcript MGP_CASTEiJ_T0017291.1 MGP_CASTEiJ_G0014853.1 mouse_genomes_project 4 21804440 22116832 + processed_transcript processed_transcript MGP_CASTEiJ_T0014125.1 MGP_CASTEiJ_G0012288.1 mouse_genomes_project 4 70016350 70016948 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013969.1 MGP_CASTEiJ_G0012132.1 mouse_genomes_project 4 12745139 12746459 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017301.1 MGP_CASTEiJ_G0014860.1 mouse_genomes_project 4 43619111 43620958 - Gm12409 processed_transcript processed_transcript MGP_CASTEiJ_T0007731.1 MGP_CASTEiJ_G0006336.1 mouse_genomes_project 4 105735673 105741823 + 4933424M12Rik lincRNA lincRNA MGP_CASTEiJ_T0007732.1 MGP_CASTEiJ_G0006336.1 mouse_genomes_project 4 105739737 105741823 + 4933424M12Rik lincRNA lincRNA MGP_CASTEiJ_T0007627.1 MGP_CASTEiJ_G0006249.1 mouse_genomes_project 4 20806647 20807110 - Gm28448 lincRNA lincRNA MGP_CASTEiJ_T0014337.1 MGP_CASTEiJ_G0012500.1 mouse_genomes_project 4 152251424 152251680 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014172.1 MGP_CASTEiJ_G0012335.1 mouse_genomes_project 4 88008450 88009202 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065632.1 MGP_CASTEiJ_G0027410.1 mouse_genomes_project 4 46104752 46163127 + MGP_CASTEiJ_P0065632 Stx17 protein_coding protein_coding MGP_CASTEiJ_T0065633.1 MGP_CASTEiJ_G0027410.1 mouse_genomes_project 4 46104760 46141060 + MGP_CASTEiJ_P0065633 Stx17 protein_coding protein_coding MGP_CASTEiJ_T0065634.1 MGP_CASTEiJ_G0027410.1 mouse_genomes_project 4 46104763 46163721 + MGP_CASTEiJ_P0065634 Stx17 protein_coding protein_coding MGP_CASTEiJ_T0065635.1 MGP_CASTEiJ_G0027410.1 mouse_genomes_project 4 46104772 46159451 + MGP_CASTEiJ_P0065635 Stx17 protein_coding protein_coding MGP_CASTEiJ_T0065636.1 MGP_CASTEiJ_G0027410.1 mouse_genomes_project 4 46104792 46162544 + MGP_CASTEiJ_P0065636 Stx17 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068623.1 MGP_CASTEiJ_G0028057.1 mouse_genomes_project 4 133225089 133236914 + MGP_CASTEiJ_P0068623 Paqr7 protein_coding protein_coding MGP_CASTEiJ_T0068624.1 MGP_CASTEiJ_G0028057.1 mouse_genomes_project 4 133225367 133235315 + MGP_CASTEiJ_P0068624 Paqr7 protein_coding protein_coding MGP_CASTEiJ_T0068625.1 MGP_CASTEiJ_G0028057.1 mouse_genomes_project 4 133225367 133235646 + MGP_CASTEiJ_P0068625 Paqr7 protein_coding protein_coding MGP_CASTEiJ_T0068626.1 MGP_CASTEiJ_G0028057.1 mouse_genomes_project 4 133225373 133235375 + MGP_CASTEiJ_P0068626 Paqr7 protein_coding protein_coding MGP_CASTEiJ_T0068627.1 MGP_CASTEiJ_G0028057.1 mouse_genomes_project 4 133225396 133238371 + MGP_CASTEiJ_P0068627 Paqr7 protein_coding protein_coding MGP_CASTEiJ_T0068628.1 MGP_CASTEiJ_G0028057.1 mouse_genomes_project 4 133225433 133235095 + Paqr7 protein_coding processed_transcript MGP_CASTEiJ_T0067750.1 MGP_CASTEiJ_G0027884.1 mouse_genomes_project 4 122919164 122920415 - protein_coding retained_intron MGP_CASTEiJ_T0067751.1 MGP_CASTEiJ_G0027884.1 mouse_genomes_project 4 122919567 122920689 - MGP_CASTEiJ_P0067751 protein_coding protein_coding MGP_CASTEiJ_T0067752.1 MGP_CASTEiJ_G0027884.1 mouse_genomes_project 4 122919569 122920894 - MGP_CASTEiJ_P0067752 protein_coding protein_coding MGP_CASTEiJ_T0067753.1 MGP_CASTEiJ_G0027884.1 mouse_genomes_project 4 122919570 122920746 - MGP_CASTEiJ_P0067753 protein_coding protein_coding MGP_CASTEiJ_T0067754.1 MGP_CASTEiJ_G0027884.1 mouse_genomes_project 4 122919574 122921292 - MGP_CASTEiJ_P0067754 protein_coding protein_coding MGP_CASTEiJ_T0068230.1 MGP_CASTEiJ_G0027977.1 mouse_genomes_project 4 128834930 128835443 - MGP_CASTEiJ_P0068230 Gm10570 protein_coding protein_coding MGP_CASTEiJ_T0066909.1 MGP_CASTEiJ_G0027698.1 mouse_genomes_project 4 107037759 107099348 + MGP_CASTEiJ_P0066909 Nrd1 protein_coding protein_coding MGP_CASTEiJ_T0066910.1 MGP_CASTEiJ_G0027698.1 mouse_genomes_project 4 107037759 107099348 + MGP_CASTEiJ_P0066910 Nrd1 protein_coding protein_coding MGP_CASTEiJ_T0066911.1 MGP_CASTEiJ_G0027698.1 mouse_genomes_project 4 107037874 107098727 + MGP_CASTEiJ_P0066911 Nrd1 protein_coding protein_coding MGP_CASTEiJ_T0066912.1 MGP_CASTEiJ_G0027698.1 mouse_genomes_project 4 107054638 107082090 + MGP_CASTEiJ_P0066912 Nrd1 protein_coding protein_coding MGP_CASTEiJ_T0066913.1 MGP_CASTEiJ_G0027698.1 mouse_genomes_project 4 107061658 107070213 + Nrd1 protein_coding retained_intron MGP_CASTEiJ_T0066914.1 MGP_CASTEiJ_G0027698.1 mouse_genomes_project 4 107069907 107080855 + Nrd1 protein_coding retained_intron MGP_CASTEiJ_T0066915.1 MGP_CASTEiJ_G0027698.1 mouse_genomes_project 4 107077183 107081552 + Nrd1 protein_coding retained_intron MGP_CASTEiJ_T0066916.1 MGP_CASTEiJ_G0027698.1 mouse_genomes_project 4 107077626 107099041 + Nrd1 protein_coding processed_transcript MGP_CASTEiJ_T0066917.1 MGP_CASTEiJ_G0027698.1 mouse_genomes_project 4 107083704 107088402 + Nrd1 protein_coding processed_transcript MGP_CASTEiJ_T0066918.1 MGP_CASTEiJ_G0027698.1 mouse_genomes_project 4 107092500 107094422 + Nrd1 protein_coding retained_intron MGP_CASTEiJ_T0066919.1 MGP_CASTEiJ_G0027698.1 mouse_genomes_project 4 107096502 107097366 + Nrd1 protein_coding retained_intron MGP_CASTEiJ_T0066920.1 MGP_CASTEiJ_G0027698.1 mouse_genomes_project 4 107096559 107098246 + Nrd1 protein_coding retained_intron MGP_CASTEiJ_T0014134.1 MGP_CASTEiJ_G0012297.1 mouse_genomes_project 4 72203925 72204240 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099810.1 MGP_CASTEiJ_G0036723.1 mouse_genomes_project 4 98975129 98975300 + Gm25124 snRNA snRNA MGP_CASTEiJ_T0067433.1 MGP_CASTEiJ_G0027799.1 mouse_genomes_project 4 116207787 116226934 - MGP_CASTEiJ_P0067433 Mpl protein_coding unknown_likely_coding MGP_CASTEiJ_T0067434.1 MGP_CASTEiJ_G0027799.1 mouse_genomes_project 4 116207787 116226934 - MGP_CASTEiJ_P0067434 Mpl protein_coding unknown_likely_coding MGP_CASTEiJ_T0067435.1 MGP_CASTEiJ_G0027799.1 mouse_genomes_project 4 116207787 116226934 - MGP_CASTEiJ_P0067435 Mpl protein_coding unknown_likely_coding MGP_CASTEiJ_T0067436.1 MGP_CASTEiJ_G0027799.1 mouse_genomes_project 4 116207787 116226934 - MGP_CASTEiJ_P0067436 Mpl protein_coding unknown_likely_coding MGP_CASTEiJ_T0067437.1 MGP_CASTEiJ_G0027799.1 mouse_genomes_project 4 116207796 116226909 - MGP_CASTEiJ_P0067437 Mpl protein_coding protein_coding MGP_CASTEiJ_T0067438.1 MGP_CASTEiJ_G0027799.1 mouse_genomes_project 4 116207798 116226891 - MGP_CASTEiJ_P0067438 Mpl protein_coding protein_coding MGP_CASTEiJ_T0067439.1 MGP_CASTEiJ_G0027799.1 mouse_genomes_project 4 116208650 116226853 - MGP_CASTEiJ_P0067439 Mpl protein_coding protein_coding MGP_CASTEiJ_T0067440.1 MGP_CASTEiJ_G0027799.1 mouse_genomes_project 4 116208807 116226846 - MGP_CASTEiJ_P0067440 Mpl protein_coding protein_coding MGP_CASTEiJ_T0064835.1 MGP_CASTEiJ_G0027250.1 mouse_genomes_project 4 19241679 19257837 + Fbxl4 protein_coding processed_transcript MGP_CASTEiJ_T0064836.1 MGP_CASTEiJ_G0027250.1 mouse_genomes_project 4 19241679 19320031 + MGP_CASTEiJ_P0064836 Fbxl4 protein_coding protein_coding MGP_CASTEiJ_T0064837.1 MGP_CASTEiJ_G0027250.1 mouse_genomes_project 4 19241696 19320004 + MGP_CASTEiJ_P0064837 Fbxl4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064838.1 MGP_CASTEiJ_G0027250.1 mouse_genomes_project 4 19241707 19320028 + MGP_CASTEiJ_P0064838 Fbxl4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064839.1 MGP_CASTEiJ_G0027250.1 mouse_genomes_project 4 19241752 19320015 + MGP_CASTEiJ_P0064839 Fbxl4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067953.1 MGP_CASTEiJ_G0027928.1 mouse_genomes_project 4 125624519 125627892 - MGP_CASTEiJ_P0067953 Gjb5 protein_coding protein_coding MGP_CASTEiJ_T0066413.1 MGP_CASTEiJ_G0027604.1 mouse_genomes_project 4 95365138 95604691 + MGP_CASTEiJ_P0066413 Nfia protein_coding protein_coding MGP_CASTEiJ_T0066414.1 MGP_CASTEiJ_G0027604.1 mouse_genomes_project 4 95370808 95732876 + MGP_CASTEiJ_P0066414 Nfia protein_coding protein_coding MGP_CASTEiJ_T0066415.1 MGP_CASTEiJ_G0027604.1 mouse_genomes_project 4 95370809 95725322 + MGP_CASTEiJ_P0066415 Nfia protein_coding unknown_likely_coding MGP_CASTEiJ_T0066416.1 MGP_CASTEiJ_G0027604.1 mouse_genomes_project 4 95370809 95725392 + MGP_CASTEiJ_P0066416 Nfia protein_coding unknown_likely_coding MGP_CASTEiJ_T0066417.1 MGP_CASTEiJ_G0027604.1 mouse_genomes_project 4 95371001 95732873 + MGP_CASTEiJ_P0066417 Nfia protein_coding protein_coding MGP_CASTEiJ_T0066418.1 MGP_CASTEiJ_G0027604.1 mouse_genomes_project 4 95371016 95732873 + MGP_CASTEiJ_P0066418 Nfia protein_coding protein_coding MGP_CASTEiJ_T0066419.1 MGP_CASTEiJ_G0027604.1 mouse_genomes_project 4 95477531 95676004 + MGP_CASTEiJ_P0066419 Nfia protein_coding protein_coding MGP_CASTEiJ_T0066420.1 MGP_CASTEiJ_G0027604.1 mouse_genomes_project 4 95510562 95651217 + Nfia protein_coding processed_transcript MGP_CASTEiJ_T0004395.1 MGP_CASTEiJ_G0003828.1 mouse_genomes_project 4 120991270 120994552 - antisense antisense MGP_CASTEiJ_T0014062.1 MGP_CASTEiJ_G0012225.1 mouse_genomes_project 4 44108001 44108881 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099853.1 MGP_CASTEiJ_G0036766.1 mouse_genomes_project 4 150387271 150387430 + Gm23405 snRNA snRNA MGP_CASTEiJ_T0065513.1 MGP_CASTEiJ_G0027382.1 mouse_genomes_project 4 43139826 43143859 - MGP_CASTEiJ_P0065513 Exosc3 protein_coding protein_coding MGP_CASTEiJ_T0065514.1 MGP_CASTEiJ_G0027382.1 mouse_genomes_project 4 43140007 43143566 - Exosc3 protein_coding processed_transcript MGP_CASTEiJ_T0065515.1 MGP_CASTEiJ_G0027382.1 mouse_genomes_project 4 43140167 43166030 - MGP_CASTEiJ_P0065515 Exosc3 protein_coding protein_coding MGP_CASTEiJ_T0065516.1 MGP_CASTEiJ_G0027382.1 mouse_genomes_project 4 43140700 43143834 - Exosc3 protein_coding processed_transcript MGP_CASTEiJ_T0007823.1 MGP_CASTEiJ_G0006402.1 mouse_genomes_project 4 141781517 141825255 - lincRNA lincRNA MGP_CASTEiJ_T0010277.1 MGP_CASTEiJ_G0008465.1 mouse_genomes_project 4 7388 7490 + Mir3471-2 miRNA miRNA MGP_CASTEiJ_T0065932.1 MGP_CASTEiJ_G0027489.1 mouse_genomes_project 4 59325853 59344205 + MGP_CASTEiJ_P0065932 Bspry protein_coding protein_coding MGP_CASTEiJ_T0065933.1 MGP_CASTEiJ_G0027489.1 mouse_genomes_project 4 59325891 59333376 + MGP_CASTEiJ_P0065933 Bspry protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0014306.1 MGP_CASTEiJ_G0012469.1 mouse_genomes_project 4 134181745 134181823 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014088.1 MGP_CASTEiJ_G0012251.1 mouse_genomes_project 4 52901976 52902544 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014174.1 MGP_CASTEiJ_G0012337.1 mouse_genomes_project 4 88443651 88444146 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014254.1 MGP_CASTEiJ_G0012417.1 mouse_genomes_project 4 116206402 116206610 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067874.1 MGP_CASTEiJ_G0027910.1 mouse_genomes_project 4 124626416 124667618 - MGP_CASTEiJ_P0067874 Ago1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067875.1 MGP_CASTEiJ_G0027910.1 mouse_genomes_project 4 124631089 124667683 - MGP_CASTEiJ_P0067875 Ago1 protein_coding protein_coding MGP_CASTEiJ_T0067876.1 MGP_CASTEiJ_G0027910.1 mouse_genomes_project 4 124634387 124660269 - MGP_CASTEiJ_P0067876 Ago1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067877.1 MGP_CASTEiJ_G0027910.1 mouse_genomes_project 4 124635570 124657693 - MGP_CASTEiJ_P0067877 Ago1 protein_coding protein_coding MGP_CASTEiJ_T0067878.1 MGP_CASTEiJ_G0027910.1 mouse_genomes_project 4 124640157 124640918 - Ago1 protein_coding retained_intron MGP_CASTEiJ_T0067879.1 MGP_CASTEiJ_G0027910.1 mouse_genomes_project 4 124657800 124658611 - Ago1 protein_coding retained_intron MGP_CASTEiJ_T0066243.1 MGP_CASTEiJ_G0027553.1 mouse_genomes_project 4 84286702 84335137 + MGP_CASTEiJ_P0066243 Acer2 protein_coding protein_coding MGP_CASTEiJ_T0066244.1 MGP_CASTEiJ_G0027553.1 mouse_genomes_project 4 84286720 84349550 + Acer2 protein_coding processed_transcript MGP_CASTEiJ_T0066245.1 MGP_CASTEiJ_G0027553.1 mouse_genomes_project 4 84286720 84335137 + MGP_CASTEiJ_P0066245 Acer2 protein_coding protein_coding MGP_CASTEiJ_T0066246.1 MGP_CASTEiJ_G0027553.1 mouse_genomes_project 4 84347788 84351863 + Acer2 protein_coding processed_transcript MGP_CASTEiJ_T0001359.1 MGP_CASTEiJ_G0001289.1 mouse_genomes_project 4 42471394 42473704 + TEC TEC MGP_CASTEiJ_T0004365.1 MGP_CASTEiJ_G0003804.1 mouse_genomes_project 4 104451897 104453892 - Gm12744 antisense antisense MGP_CASTEiJ_T0007782.1 MGP_CASTEiJ_G0006372.1 mouse_genomes_project 4 129915432 129934063 + Gm831 lincRNA lincRNA MGP_CASTEiJ_T0007684.1 MGP_CASTEiJ_G0006299.1 mouse_genomes_project 4 79199360 79201259 - Gm12914 lincRNA lincRNA MGP_CASTEiJ_T0014069.1 MGP_CASTEiJ_G0012232.1 mouse_genomes_project 4 46994539 46994877 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099804.1 MGP_CASTEiJ_G0036717.1 mouse_genomes_project 4 94491689 94491752 + Gm27579 snRNA snRNA MGP_CASTEiJ_T0067621.1 MGP_CASTEiJ_G0027846.1 mouse_genomes_project 4 118894085 118911240 - MGP_CASTEiJ_P0067621 Zfp69 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067622.1 MGP_CASTEiJ_G0027846.1 mouse_genomes_project 4 118894093 118911475 - MGP_CASTEiJ_P0067622 Zfp69 protein_coding protein_coding MGP_CASTEiJ_T0067623.1 MGP_CASTEiJ_G0027846.1 mouse_genomes_project 4 118894309 118909205 - MGP_CASTEiJ_P0067623 Zfp69 protein_coding protein_coding MGP_CASTEiJ_T0067624.1 MGP_CASTEiJ_G0027846.1 mouse_genomes_project 4 118895262 118907603 - MGP_CASTEiJ_P0067624 Zfp69 protein_coding protein_coding MGP_CASTEiJ_T0067625.1 MGP_CASTEiJ_G0027846.1 mouse_genomes_project 4 118895263 118898640 - Zfp69 protein_coding retained_intron MGP_CASTEiJ_T0067626.1 MGP_CASTEiJ_G0027846.1 mouse_genomes_project 4 118895343 118911240 - MGP_CASTEiJ_P0067626 Zfp69 protein_coding unknown_likely_coding MGP_CASTEiJ_T0011239.1 MGP_CASTEiJ_G0009427.1 mouse_genomes_project 4 67458218 67458524 - Gm26320 misc_RNA misc_RNA MGP_CASTEiJ_T0065984.1 MGP_CASTEiJ_G0027502.1 mouse_genomes_project 4 60274576 60311082 - MGP_CASTEiJ_P0065984 Akna protein_coding protein_coding MGP_CASTEiJ_T0065985.1 MGP_CASTEiJ_G0027502.1 mouse_genomes_project 4 60275365 60311082 - MGP_CASTEiJ_P0065985 Akna protein_coding unknown_likely_coding MGP_CASTEiJ_T0065986.1 MGP_CASTEiJ_G0027502.1 mouse_genomes_project 4 60287288 60288568 - Akna protein_coding processed_transcript MGP_CASTEiJ_T0066100.1 MGP_CASTEiJ_G0027529.1 mouse_genomes_project 4 77305681 77312104 + MGP_CASTEiJ_P0066100 protein_coding protein_coding MGP_CASTEiJ_T0102326.1 MGP_CASTEiJ_G0039051.1 mouse_genomes_project 4 116711559 116712514 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0004381.1 MGP_CASTEiJ_G0003815.1 mouse_genomes_project 4 113461627 113461887 - Gm29434 antisense antisense MGP_CASTEiJ_T0014009.1 MGP_CASTEiJ_G0012172.1 mouse_genomes_project 4 25481195 25481542 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068676.1 MGP_CASTEiJ_G0028069.1 mouse_genomes_project 4 133997538 134068034 - MGP_CASTEiJ_P0068676 Clic4 protein_coding protein_coding MGP_CASTEiJ_T0068677.1 MGP_CASTEiJ_G0028069.1 mouse_genomes_project 4 134006870 134068034 - Clic4 protein_coding retained_intron MGP_CASTEiJ_T0065834.1 MGP_CASTEiJ_G0027464.1 mouse_genomes_project 4 56859980 56925826 - MGP_CASTEiJ_P0065834 Lpar1 protein_coding protein_coding MGP_CASTEiJ_T0065835.1 MGP_CASTEiJ_G0027464.1 mouse_genomes_project 4 56859980 56984822 - MGP_CASTEiJ_P0065835 Lpar1 protein_coding protein_coding MGP_CASTEiJ_T0065836.1 MGP_CASTEiJ_G0027464.1 mouse_genomes_project 4 56859980 56985018 - MGP_CASTEiJ_P0065836 Lpar1 protein_coding protein_coding MGP_CASTEiJ_T0065837.1 MGP_CASTEiJ_G0027464.1 mouse_genomes_project 4 56859980 56984776 - MGP_CASTEiJ_P0065837 Lpar1 protein_coding protein_coding MGP_CASTEiJ_T0065838.1 MGP_CASTEiJ_G0027464.1 mouse_genomes_project 4 56859980 56985093 - MGP_CASTEiJ_P0065838 Lpar1 protein_coding protein_coding MGP_CASTEiJ_T0065839.1 MGP_CASTEiJ_G0027464.1 mouse_genomes_project 4 56913585 56979837 - MGP_CASTEiJ_P0065839 Lpar1 protein_coding protein_coding MGP_CASTEiJ_T0065840.1 MGP_CASTEiJ_G0027464.1 mouse_genomes_project 4 56913640 56985363 - MGP_CASTEiJ_P0065840 Lpar1 protein_coding protein_coding MGP_CASTEiJ_T0065841.1 MGP_CASTEiJ_G0027464.1 mouse_genomes_project 4 56913674 56984649 - MGP_CASTEiJ_P0065841 Lpar1 protein_coding protein_coding MGP_CASTEiJ_T0065967.1 MGP_CASTEiJ_G0027497.1 mouse_genomes_project 4 60047697 60054149 - Kif12 protein_coding processed_transcript MGP_CASTEiJ_T0065968.1 MGP_CASTEiJ_G0027497.1 mouse_genomes_project 4 60047700 60054234 - MGP_CASTEiJ_P0065968 Kif12 protein_coding protein_coding MGP_CASTEiJ_T0065969.1 MGP_CASTEiJ_G0027497.1 mouse_genomes_project 4 60049563 60052885 - Kif12 protein_coding processed_transcript MGP_CASTEiJ_T0065970.1 MGP_CASTEiJ_G0027497.1 mouse_genomes_project 4 60049816 60053277 - Kif12 protein_coding processed_transcript MGP_CASTEiJ_T0065971.1 MGP_CASTEiJ_G0027497.1 mouse_genomes_project 4 60051494 60053833 - Kif12 protein_coding processed_transcript MGP_CASTEiJ_T0068954.1 MGP_CASTEiJ_G0028128.1 mouse_genomes_project 4 137670147 137745590 - MGP_CASTEiJ_P0068954 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068955.1 MGP_CASTEiJ_G0028128.1 mouse_genomes_project 4 137676946 137688576 - MGP_CASTEiJ_P0068955 protein_coding protein_coding MGP_CASTEiJ_T0068956.1 MGP_CASTEiJ_G0028128.1 mouse_genomes_project 4 137689122 137745548 - MGP_CASTEiJ_P0068956 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068957.1 MGP_CASTEiJ_G0028128.1 mouse_genomes_project 4 137701605 137715099 - protein_coding processed_transcript MGP_CASTEiJ_T0068958.1 MGP_CASTEiJ_G0028128.1 mouse_genomes_project 4 137708711 137715569 - protein_coding processed_transcript MGP_CASTEiJ_T0067046.1 MGP_CASTEiJ_G0027722.1 mouse_genomes_project 4 112499857 112534038 + MGP_CASTEiJ_P0067046 Gm12830 protein_coding protein_coding MGP_CASTEiJ_T0067030.1 MGP_CASTEiJ_G0027716.1 mouse_genomes_project 4 110089048 110110323 + MGP_CASTEiJ_P0067030 Skint1 protein_coding protein_coding MGP_CASTEiJ_T0067031.1 MGP_CASTEiJ_G0027716.1 mouse_genomes_project 4 110089048 110114194 + MGP_CASTEiJ_P0067031 Skint1 protein_coding protein_coding MGP_CASTEiJ_T0067032.1 MGP_CASTEiJ_G0027716.1 mouse_genomes_project 4 110089048 110110323 + MGP_CASTEiJ_P0067032 Skint1 protein_coding protein_coding MGP_CASTEiJ_T0067033.1 MGP_CASTEiJ_G0027716.1 mouse_genomes_project 4 110089048 110104381 + MGP_CASTEiJ_P0067033 Skint1 protein_coding protein_coding MGP_CASTEiJ_T0067034.1 MGP_CASTEiJ_G0027716.1 mouse_genomes_project 4 110089061 110096081 + Skint1 protein_coding retained_intron MGP_CASTEiJ_T0011236.1 MGP_CASTEiJ_G0009424.1 mouse_genomes_project 4 51927958 51928257 - Gm25445 misc_RNA misc_RNA MGP_CASTEiJ_T0066063.1 MGP_CASTEiJ_G0027524.1 mouse_genomes_project 4 71034622 71037023 - 2310002L09Rik protein_coding processed_transcript MGP_CASTEiJ_T0066064.1 MGP_CASTEiJ_G0027524.1 mouse_genomes_project 4 71034622 71048553 - MGP_CASTEiJ_P0066064 2310002L09Rik protein_coding protein_coding MGP_CASTEiJ_T0066065.1 MGP_CASTEiJ_G0027524.1 mouse_genomes_project 4 71036800 71048552 - MGP_CASTEiJ_P0066065 2310002L09Rik protein_coding protein_coding MGP_CASTEiJ_T0064691.1 MGP_CASTEiJ_G0027210.1 mouse_genomes_project 4 8394038 8462047 + MGP_CASTEiJ_P0064691 Cdh17 protein_coding protein_coding MGP_CASTEiJ_T0064692.1 MGP_CASTEiJ_G0027210.1 mouse_genomes_project 4 8394084 8453161 + MGP_CASTEiJ_P0064692 Cdh17 protein_coding protein_coding MGP_CASTEiJ_T0069424.1 MGP_CASTEiJ_G0028248.1 mouse_genomes_project 4 148331421 148351302 + MGP_CASTEiJ_P0069424 Dffa protein_coding protein_coding MGP_CASTEiJ_T0069425.1 MGP_CASTEiJ_G0028248.1 mouse_genomes_project 4 148331421 148348606 + MGP_CASTEiJ_P0069425 Dffa protein_coding protein_coding MGP_CASTEiJ_T0069426.1 MGP_CASTEiJ_G0028248.1 mouse_genomes_project 4 148335053 148335519 + Dffa protein_coding processed_transcript MGP_CASTEiJ_T0101024.1 MGP_CASTEiJ_G0037937.1 mouse_genomes_project 4 19277732 19277865 + Gm24607 snoRNA snoRNA MGP_CASTEiJ_T0013949.1 MGP_CASTEiJ_G0012112.1 mouse_genomes_project 4 6629708 6630631 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014302.1 MGP_CASTEiJ_G0012465.1 mouse_genomes_project 4 133048588 133048849 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069628.1 MGP_CASTEiJ_G0028284.1 mouse_genomes_project 4 151546374 151549489 - MGP_CASTEiJ_P0069628 Tas1r1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069629.1 MGP_CASTEiJ_G0028284.1 mouse_genomes_project 4 151546383 151558332 - MGP_CASTEiJ_P0069629 Tas1r1 protein_coding protein_coding MGP_CASTEiJ_T0069630.1 MGP_CASTEiJ_G0028284.1 mouse_genomes_project 4 151546535 151557183 - MGP_CASTEiJ_P0069630 Tas1r1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069631.1 MGP_CASTEiJ_G0028284.1 mouse_genomes_project 4 151551306 151557229 - MGP_CASTEiJ_P0069631 Tas1r1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068959.1 MGP_CASTEiJ_G0028129.1 mouse_genomes_project 4 137834944 137850837 - MGP_CASTEiJ_P0068959 Ubxn10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068960.1 MGP_CASTEiJ_G0028129.1 mouse_genomes_project 4 137843862 137850881 - MGP_CASTEiJ_P0068960 Ubxn10 protein_coding protein_coding MGP_CASTEiJ_T0068961.1 MGP_CASTEiJ_G0028129.1 mouse_genomes_project 4 137843862 137864901 - MGP_CASTEiJ_P0068961 Ubxn10 protein_coding protein_coding MGP_CASTEiJ_T0068962.1 MGP_CASTEiJ_G0028129.1 mouse_genomes_project 4 137844485 137850474 - MGP_CASTEiJ_P0068962 Ubxn10 protein_coding protein_coding MGP_CASTEiJ_T0068966.1 MGP_CASTEiJ_G0028129.1 mouse_genomes_project 4 137857535 137864870 - Ubxn10 protein_coding processed_transcript MGP_CASTEiJ_T0007820.1 MGP_CASTEiJ_G0006399.1 mouse_genomes_project 4 140665673 140666943 + Gm13056 lincRNA lincRNA MGP_CASTEiJ_T0066972.1 MGP_CASTEiJ_G0027706.1 mouse_genomes_project 4 107733372 108045719 + MGP_CASTEiJ_P0066972 Faf1 protein_coding protein_coding MGP_CASTEiJ_T0066973.1 MGP_CASTEiJ_G0027706.1 mouse_genomes_project 4 107733781 107740126 + Faf1 protein_coding processed_transcript MGP_CASTEiJ_T0004343.1 MGP_CASTEiJ_G0003792.1 mouse_genomes_project 4 85505531 85507038 + Gm12631 antisense antisense MGP_CASTEiJ_T0066396.1 MGP_CASTEiJ_G0027596.1 mouse_genomes_project 4 93886531 93942519 - MGP_CASTEiJ_P0066396 Cyp2j11 protein_coding protein_coding MGP_CASTEiJ_T0014204.1 MGP_CASTEiJ_G0012367.1 mouse_genomes_project 4 98910890 98912387 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014179.1 MGP_CASTEiJ_G0012342.1 mouse_genomes_project 4 90704083 90707013 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004318.1 MGP_CASTEiJ_G0003769.1 mouse_genomes_project 4 41330371 41342270 - Gm12473 antisense antisense MGP_CASTEiJ_T0014195.1 MGP_CASTEiJ_G0012358.1 mouse_genomes_project 4 96777813 96780567 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069517.1 MGP_CASTEiJ_G0028264.1 mouse_genomes_project 4 149405984 149423752 + MGP_CASTEiJ_P0069517 Gpr157 protein_coding protein_coding MGP_CASTEiJ_T0004364.1 MGP_CASTEiJ_G0003803.1 mouse_genomes_project 4 104417453 104420689 - 2700068H02Rik antisense antisense MGP_CASTEiJ_T0068953.1 MGP_CASTEiJ_G0028127.1 mouse_genomes_project 4 137545913 137551713 + MGP_CASTEiJ_P0068953 Camk2n1 protein_coding protein_coding MGP_CASTEiJ_T0068294.1 MGP_CASTEiJ_G0027989.1 mouse_genomes_project 4 130382852 130386273 + MGP_CASTEiJ_P0068294 Tmem200b protein_coding unknown_likely_coding MGP_CASTEiJ_T0017337.1 MGP_CASTEiJ_G0014885.1 mouse_genomes_project 4 114225323 114235400 - C530005A16Rik processed_transcript processed_transcript MGP_CASTEiJ_T0014132.1 MGP_CASTEiJ_G0012295.1 mouse_genomes_project 4 71786332 71786985 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066224.1 MGP_CASTEiJ_G0027549.1 mouse_genomes_project 4 83985796 84021382 - MGP_CASTEiJ_P0066224 Haus6 protein_coding protein_coding MGP_CASTEiJ_T0066225.1 MGP_CASTEiJ_G0027549.1 mouse_genomes_project 4 83993138 84021382 - Haus6 protein_coding processed_transcript MGP_CASTEiJ_T0066226.1 MGP_CASTEiJ_G0027549.1 mouse_genomes_project 4 84011161 84021346 - Haus6 protein_coding processed_transcript MGP_CASTEiJ_T0066227.1 MGP_CASTEiJ_G0027549.1 mouse_genomes_project 4 84013919 84021376 - MGP_CASTEiJ_P0066227 Haus6 protein_coding protein_coding MGP_CASTEiJ_T0066955.1 MGP_CASTEiJ_G0027702.1 mouse_genomes_project 4 107457227 107479637 + MGP_CASTEiJ_P0066955 Ttc39a protein_coding protein_coding MGP_CASTEiJ_T0066956.1 MGP_CASTEiJ_G0027702.1 mouse_genomes_project 4 107457688 107495299 + MGP_CASTEiJ_P0066956 Ttc39a protein_coding protein_coding MGP_CASTEiJ_T0066957.1 MGP_CASTEiJ_G0027702.1 mouse_genomes_project 4 107457711 107475736 + MGP_CASTEiJ_P0066957 Ttc39a protein_coding protein_coding MGP_CASTEiJ_T0066958.1 MGP_CASTEiJ_G0027702.1 mouse_genomes_project 4 107457730 107474422 + Ttc39a protein_coding processed_transcript MGP_CASTEiJ_T0066959.1 MGP_CASTEiJ_G0027702.1 mouse_genomes_project 4 107457730 107495046 + MGP_CASTEiJ_P0066959 Ttc39a protein_coding unknown_likely_coding MGP_CASTEiJ_T0066960.1 MGP_CASTEiJ_G0027702.1 mouse_genomes_project 4 107457730 107495046 + MGP_CASTEiJ_P0066960 Ttc39a protein_coding unknown_likely_coding MGP_CASTEiJ_T0066961.1 MGP_CASTEiJ_G0027702.1 mouse_genomes_project 4 107465344 107479705 + MGP_CASTEiJ_P0066961 Ttc39a protein_coding protein_coding MGP_CASTEiJ_T0066962.1 MGP_CASTEiJ_G0027702.1 mouse_genomes_project 4 107466212 107494937 + MGP_CASTEiJ_P0066962 Ttc39a protein_coding protein_coding MGP_CASTEiJ_T0066963.1 MGP_CASTEiJ_G0027702.1 mouse_genomes_project 4 107466338 107472864 + Ttc39a protein_coding processed_transcript MGP_CASTEiJ_T0066964.1 MGP_CASTEiJ_G0027702.1 mouse_genomes_project 4 107472428 107477862 + MGP_CASTEiJ_P0066964 Ttc39a protein_coding protein_coding MGP_CASTEiJ_T0067956.1 MGP_CASTEiJ_G0027930.1 mouse_genomes_project 4 126300480 126682904 + Csmd2 protein_coding processed_transcript MGP_CASTEiJ_T0067957.1 MGP_CASTEiJ_G0027930.1 mouse_genomes_project 4 126300662 126764754 + Csmd2 protein_coding retained_intron MGP_CASTEiJ_T0067958.1 MGP_CASTEiJ_G0027930.1 mouse_genomes_project 4 126300688 126912701 + MGP_CASTEiJ_P0067958 Csmd2 protein_coding protein_coding MGP_CASTEiJ_T0067960.1 MGP_CASTEiJ_G0027930.1 mouse_genomes_project 4 126816407 126842426 + Csmd2 protein_coding processed_transcript MGP_CASTEiJ_T0067961.1 MGP_CASTEiJ_G0027930.1 mouse_genomes_project 4 126864425 126873526 + Csmd2 protein_coding processed_transcript MGP_CASTEiJ_T0067962.1 MGP_CASTEiJ_G0027930.1 mouse_genomes_project 4 126893010 126897755 + Csmd2 protein_coding processed_transcript MGP_CASTEiJ_T0013992.1 MGP_CASTEiJ_G0012155.1 mouse_genomes_project 4 21106183 21107386 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098379.1 MGP_CASTEiJ_G0035310.1 mouse_genomes_project 4 34401959 34402297 - pseudogene pseudogene MGP_CASTEiJ_T0013951.1 MGP_CASTEiJ_G0012114.1 mouse_genomes_project 4 7380090 7381276 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065078.1 MGP_CASTEiJ_G0027306.1 mouse_genomes_project 4 38566474 38608486 + MGP_CASTEiJ_P0065078 Nfx1 protein_coding protein_coding MGP_CASTEiJ_T0065079.1 MGP_CASTEiJ_G0027306.1 mouse_genomes_project 4 38566474 38609750 + MGP_CASTEiJ_P0065079 Nfx1 protein_coding protein_coding MGP_CASTEiJ_T0065080.1 MGP_CASTEiJ_G0027306.1 mouse_genomes_project 4 38566474 38623461 + MGP_CASTEiJ_P0065080 Nfx1 protein_coding protein_coding MGP_CASTEiJ_T0065081.1 MGP_CASTEiJ_G0027306.1 mouse_genomes_project 4 38598092 38608047 + Nfx1 protein_coding processed_transcript MGP_CASTEiJ_T0065082.1 MGP_CASTEiJ_G0027306.1 mouse_genomes_project 4 38605095 38620208 + Nfx1 protein_coding processed_transcript MGP_CASTEiJ_T0065083.1 MGP_CASTEiJ_G0027306.1 mouse_genomes_project 4 38619258 38622635 + Nfx1 protein_coding processed_transcript MGP_CASTEiJ_T0065084.1 MGP_CASTEiJ_G0027306.1 mouse_genomes_project 4 38620679 38622014 + Nfx1 protein_coding processed_transcript MGP_CASTEiJ_T0067368.1 MGP_CASTEiJ_G0027787.1 mouse_genomes_project 4 115598793 115609259 - MGP_CASTEiJ_P0067368 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067369.1 MGP_CASTEiJ_G0027787.1 mouse_genomes_project 4 115599592 115608909 - MGP_CASTEiJ_P0067369 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067371.1 MGP_CASTEiJ_G0027787.1 mouse_genomes_project 4 115603357 115608938 - MGP_CASTEiJ_P0067371 protein_coding protein_coding MGP_CASTEiJ_T0067372.1 MGP_CASTEiJ_G0027787.1 mouse_genomes_project 4 115606798 115609002 - protein_coding processed_transcript MGP_CASTEiJ_T0067373.1 MGP_CASTEiJ_G0027787.1 mouse_genomes_project 4 115607172 115608074 - MGP_CASTEiJ_P0067373 protein_coding protein_coding MGP_CASTEiJ_T0007779.1 MGP_CASTEiJ_G0006370.1 mouse_genomes_project 4 129374713 129403821 + Gm12973 lincRNA lincRNA MGP_CASTEiJ_T0014076.1 MGP_CASTEiJ_G0012239.1 mouse_genomes_project 4 49303724 49304080 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065800.1 MGP_CASTEiJ_G0027456.1 mouse_genomes_project 4 55811131 56104529 + MGP_CASTEiJ_P0065800 Palm2 protein_coding protein_coding MGP_CASTEiJ_T0065801.1 MGP_CASTEiJ_G0027456.1 mouse_genomes_project 4 55953054 56104316 + MGP_CASTEiJ_P0065801 Palm2 protein_coding protein_coding MGP_CASTEiJ_T0065803.1 MGP_CASTEiJ_G0027456.1 mouse_genomes_project 4 55953211 56102748 + MGP_CASTEiJ_P0065803 Palm2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065806.1 MGP_CASTEiJ_G0027456.1 mouse_genomes_project 4 56027154 56102008 + Palm2 protein_coding retained_intron MGP_CASTEiJ_T0064776.1 MGP_CASTEiJ_G0027235.1 mouse_genomes_project 4 16407221 16432361 + MGP_CASTEiJ_P0064776 Rmdn1 protein_coding protein_coding MGP_CASTEiJ_T0064777.1 MGP_CASTEiJ_G0027235.1 mouse_genomes_project 4 16407266 16440650 + MGP_CASTEiJ_P0064777 Rmdn1 protein_coding protein_coding MGP_CASTEiJ_T0098941.1 MGP_CASTEiJ_G0035865.1 mouse_genomes_project 4 81064885 81065364 + Gm26968 sense_intronic sense_intronic MGP_CASTEiJ_T0064991.1 MGP_CASTEiJ_G0027283.1 mouse_genomes_project 4 32034833 32078218 - MGP_CASTEiJ_P0064991 Cfap206 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064992.1 MGP_CASTEiJ_G0027283.1 mouse_genomes_project 4 32035224 32067190 - Cfap206 protein_coding processed_transcript MGP_CASTEiJ_T0064993.1 MGP_CASTEiJ_G0027283.1 mouse_genomes_project 4 32048694 32078215 - MGP_CASTEiJ_P0064993 Cfap206 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064994.1 MGP_CASTEiJ_G0027283.1 mouse_genomes_project 4 32048694 32078216 - MGP_CASTEiJ_P0064994 Cfap206 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064995.1 MGP_CASTEiJ_G0027283.1 mouse_genomes_project 4 32057246 32078195 - MGP_CASTEiJ_P0064995 Cfap206 protein_coding protein_coding MGP_CASTEiJ_T0064996.1 MGP_CASTEiJ_G0027283.1 mouse_genomes_project 4 32068967 32078212 - MGP_CASTEiJ_P0064996 Cfap206 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064997.1 MGP_CASTEiJ_G0027283.1 mouse_genomes_project 4 32068998 32078212 - MGP_CASTEiJ_P0064997 Cfap206 protein_coding protein_coding MGP_CASTEiJ_T0064998.1 MGP_CASTEiJ_G0027283.1 mouse_genomes_project 4 32071129 32078212 - Cfap206 protein_coding processed_transcript MGP_CASTEiJ_T0065802.1 MGP_CASTEiJ_G0027457.1 mouse_genomes_project 4 55953074 56300924 + MGP_CASTEiJ_P0065802 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065804.1 MGP_CASTEiJ_G0027457.1 mouse_genomes_project 4 55953221 56257686 + MGP_CASTEiJ_P0065804 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065805.1 MGP_CASTEiJ_G0027457.1 mouse_genomes_project 4 56026991 56298650 + MGP_CASTEiJ_P0065805 protein_coding protein_coding MGP_CASTEiJ_T0065812.1 MGP_CASTEiJ_G0027457.1 mouse_genomes_project 4 56248005 56300926 + MGP_CASTEiJ_P0065812 protein_coding protein_coding MGP_CASTEiJ_T0014096.1 MGP_CASTEiJ_G0012259.1 mouse_genomes_project 4 53672151 53672503 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068653.1 MGP_CASTEiJ_G0028064.1 mouse_genomes_project 4 133623516 133656581 + MGP_CASTEiJ_P0068653 Rhd protein_coding protein_coding MGP_CASTEiJ_T0068654.1 MGP_CASTEiJ_G0028064.1 mouse_genomes_project 4 133640862 133650756 + Rhd protein_coding retained_intron MGP_CASTEiJ_T0068640.1 MGP_CASTEiJ_G0028061.1 mouse_genomes_project 4 133296075 133455542 - MGP_CASTEiJ_P0068640 Man1c1 protein_coding protein_coding MGP_CASTEiJ_T0068641.1 MGP_CASTEiJ_G0028061.1 mouse_genomes_project 4 133296075 133455542 - MGP_CASTEiJ_P0068641 Man1c1 protein_coding protein_coding MGP_CASTEiJ_T0068642.1 MGP_CASTEiJ_G0028061.1 mouse_genomes_project 4 133302115 133455019 - Man1c1 protein_coding retained_intron MGP_CASTEiJ_T0066709.1 MGP_CASTEiJ_G0027662.1 mouse_genomes_project 4 104980619 104991913 + Cyb5rl protein_coding retained_intron MGP_CASTEiJ_T0066710.1 MGP_CASTEiJ_G0027662.1 mouse_genomes_project 4 104980619 104999443 + MGP_CASTEiJ_P0066710 Cyb5rl protein_coding protein_coding MGP_CASTEiJ_T0066711.1 MGP_CASTEiJ_G0027662.1 mouse_genomes_project 4 104980627 105001179 + MGP_CASTEiJ_P0066711 Cyb5rl protein_coding protein_coding MGP_CASTEiJ_T0066712.1 MGP_CASTEiJ_G0027662.1 mouse_genomes_project 4 104980627 104984549 + MGP_CASTEiJ_P0066712 Cyb5rl protein_coding protein_coding MGP_CASTEiJ_T0066713.1 MGP_CASTEiJ_G0027662.1 mouse_genomes_project 4 104980650 105001917 + MGP_CASTEiJ_P0066713 Cyb5rl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066714.1 MGP_CASTEiJ_G0027662.1 mouse_genomes_project 4 104980655 104984565 + MGP_CASTEiJ_P0066714 Cyb5rl protein_coding protein_coding MGP_CASTEiJ_T0066715.1 MGP_CASTEiJ_G0027662.1 mouse_genomes_project 4 104982236 104999443 + MGP_CASTEiJ_P0066715 Cyb5rl protein_coding protein_coding MGP_CASTEiJ_T0066716.1 MGP_CASTEiJ_G0027662.1 mouse_genomes_project 4 104982274 105001640 + MGP_CASTEiJ_P0066716 Cyb5rl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066717.1 MGP_CASTEiJ_G0027662.1 mouse_genomes_project 4 104983801 104998424 + MGP_CASTEiJ_P0066717 Cyb5rl protein_coding protein_coding MGP_CASTEiJ_T0066718.1 MGP_CASTEiJ_G0027662.1 mouse_genomes_project 4 104984503 104997959 + MGP_CASTEiJ_P0066718 Cyb5rl protein_coding protein_coding MGP_CASTEiJ_T0066719.1 MGP_CASTEiJ_G0027662.1 mouse_genomes_project 4 104994644 105001393 + MGP_CASTEiJ_P0066719 Cyb5rl protein_coding protein_coding MGP_CASTEiJ_T0010310.1 MGP_CASTEiJ_G0008498.1 mouse_genomes_project 4 99054490 99054573 - Mir101a miRNA miRNA MGP_CASTEiJ_T0014196.1 MGP_CASTEiJ_G0012359.1 mouse_genomes_project 4 97119774 97119988 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069685.1 MGP_CASTEiJ_G0028292.1 mouse_genomes_project 4 151835039 151836212 - MGP_CASTEiJ_P0069685 Hes3 protein_coding protein_coding MGP_CASTEiJ_T0007828.1 MGP_CASTEiJ_G0006407.1 mouse_genomes_project 4 149085925 149086613 - Gm13073 lincRNA lincRNA MGP_CASTEiJ_T0017350.1 MGP_CASTEiJ_G0014892.1 mouse_genomes_project 4 124513531 124515170 + Gm12945 processed_transcript processed_transcript MGP_CASTEiJ_T0013995.1 MGP_CASTEiJ_G0012158.1 mouse_genomes_project 4 22203955 22204779 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066632.1 MGP_CASTEiJ_G0027644.1 mouse_genomes_project 4 102659892 102662266 + MGP_CASTEiJ_P0066632 Gm17662 protein_coding protein_coding MGP_CASTEiJ_T0069309.1 MGP_CASTEiJ_G0028226.1 mouse_genomes_project 4 147051997 147058430 + MGP_CASTEiJ_P0069309 2510039O18Rik protein_coding protein_coding MGP_CASTEiJ_T0011253.1 MGP_CASTEiJ_G0009441.1 mouse_genomes_project 4 131777330 131777618 - Gm24636 misc_RNA misc_RNA MGP_CASTEiJ_T0066302.1 MGP_CASTEiJ_G0027576.1 mouse_genomes_project 4 86845520 86850270 - MGP_CASTEiJ_P0066302 Cdkn2b protein_coding protein_coding MGP_CASTEiJ_T0065856.1 MGP_CASTEiJ_G0027469.1 mouse_genomes_project 4 57444789 57472330 + MGP_CASTEiJ_P0065856 Dnajc25 protein_coding protein_coding MGP_CASTEiJ_T0065857.1 MGP_CASTEiJ_G0027469.1 mouse_genomes_project 4 57454340 57478444 + MGP_CASTEiJ_P0065857 Dnajc25 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065858.1 MGP_CASTEiJ_G0027469.1 mouse_genomes_project 4 57454351 57478444 + MGP_CASTEiJ_P0065858 Dnajc25 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065860.1 MGP_CASTEiJ_G0027469.1 mouse_genomes_project 4 57454389 57474847 + MGP_CASTEiJ_P0065860 Dnajc25 protein_coding protein_coding MGP_CASTEiJ_T0099784.1 MGP_CASTEiJ_G0036697.1 mouse_genomes_project 4 38952418 38952526 - Gm26049 snRNA snRNA MGP_CASTEiJ_T0068215.1 MGP_CASTEiJ_G0027973.1 mouse_genomes_project 4 128673217 128683194 - MGP_CASTEiJ_P0068215 Tinagl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068216.1 MGP_CASTEiJ_G0027973.1 mouse_genomes_project 4 128674014 128675018 - Tinagl1 protein_coding retained_intron MGP_CASTEiJ_T0068217.1 MGP_CASTEiJ_G0027973.1 mouse_genomes_project 4 128674014 128683169 - MGP_CASTEiJ_P0068217 Tinagl1 protein_coding protein_coding MGP_CASTEiJ_T0068218.1 MGP_CASTEiJ_G0027973.1 mouse_genomes_project 4 128675383 128677864 - Tinagl1 protein_coding retained_intron MGP_CASTEiJ_T0068219.1 MGP_CASTEiJ_G0027973.1 mouse_genomes_project 4 128677492 128683068 - MGP_CASTEiJ_P0068219 Tinagl1 protein_coding protein_coding MGP_CASTEiJ_T0068220.1 MGP_CASTEiJ_G0027973.1 mouse_genomes_project 4 128679773 128683169 - Tinagl1 protein_coding processed_transcript MGP_CASTEiJ_T0068221.1 MGP_CASTEiJ_G0027973.1 mouse_genomes_project 4 128682087 128683197 - Tinagl1 protein_coding retained_intron MGP_CASTEiJ_T0099843.1 MGP_CASTEiJ_G0036756.1 mouse_genomes_project 4 137694922 137695028 - Gm22961 snRNA snRNA MGP_CASTEiJ_T0065673.1 MGP_CASTEiJ_G0027424.1 mouse_genomes_project 4 47628810 47642184 - MGP_CASTEiJ_P0065673 Tmem246 protein_coding protein_coding MGP_CASTEiJ_T0065674.1 MGP_CASTEiJ_G0027424.1 mouse_genomes_project 4 47631070 47641778 - MGP_CASTEiJ_P0065674 Tmem246 protein_coding protein_coding MGP_CASTEiJ_T0065675.1 MGP_CASTEiJ_G0027424.1 mouse_genomes_project 4 47631356 47638205 - MGP_CASTEiJ_P0065675 Tmem246 protein_coding protein_coding MGP_CASTEiJ_T0069600.1 MGP_CASTEiJ_G0028279.1 mouse_genomes_project 4 151433086 151491915 + MGP_CASTEiJ_P0069600 Dnajc11 protein_coding protein_coding MGP_CASTEiJ_T0069601.1 MGP_CASTEiJ_G0028279.1 mouse_genomes_project 4 151433120 151490563 + MGP_CASTEiJ_P0069601 Dnajc11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069602.1 MGP_CASTEiJ_G0028279.1 mouse_genomes_project 4 151433126 151484754 + Dnajc11 protein_coding retained_intron MGP_CASTEiJ_T0069603.1 MGP_CASTEiJ_G0028279.1 mouse_genomes_project 4 151433129 151459026 + Dnajc11 protein_coding retained_intron MGP_CASTEiJ_T0069604.1 MGP_CASTEiJ_G0028279.1 mouse_genomes_project 4 151433134 151490997 + Dnajc11 protein_coding retained_intron MGP_CASTEiJ_T0069605.1 MGP_CASTEiJ_G0028279.1 mouse_genomes_project 4 151433139 151491001 + MGP_CASTEiJ_P0069605 Dnajc11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069606.1 MGP_CASTEiJ_G0028279.1 mouse_genomes_project 4 151447750 151474646 + MGP_CASTEiJ_P0069606 Dnajc11 protein_coding protein_coding MGP_CASTEiJ_T0069607.1 MGP_CASTEiJ_G0028279.1 mouse_genomes_project 4 151458660 151479650 + Dnajc11 protein_coding processed_transcript MGP_CASTEiJ_T0069608.1 MGP_CASTEiJ_G0028279.1 mouse_genomes_project 4 151473867 151482345 + Dnajc11 protein_coding processed_transcript MGP_CASTEiJ_T0069609.1 MGP_CASTEiJ_G0028279.1 mouse_genomes_project 4 151475782 151485124 + Dnajc11 protein_coding retained_intron MGP_CASTEiJ_T0069610.1 MGP_CASTEiJ_G0028279.1 mouse_genomes_project 4 151475851 151479647 + Dnajc11 protein_coding retained_intron MGP_CASTEiJ_T0069611.1 MGP_CASTEiJ_G0028279.1 mouse_genomes_project 4 151488762 151490515 + Dnajc11 protein_coding retained_intron MGP_CASTEiJ_T0069612.1 MGP_CASTEiJ_G0028279.1 mouse_genomes_project 4 151489521 151491006 + Dnajc11 protein_coding retained_intron MGP_CASTEiJ_T0065356.1 MGP_CASTEiJ_G0027352.1 mouse_genomes_project 4 41256069 41267734 - Gba2 protein_coding retained_intron MGP_CASTEiJ_T0065357.1 MGP_CASTEiJ_G0027352.1 mouse_genomes_project 4 41256069 41267286 - Gba2 protein_coding retained_intron MGP_CASTEiJ_T0065358.1 MGP_CASTEiJ_G0027352.1 mouse_genomes_project 4 41256069 41268070 - MGP_CASTEiJ_P0065358 Gba2 protein_coding protein_coding MGP_CASTEiJ_T0065359.1 MGP_CASTEiJ_G0027352.1 mouse_genomes_project 4 41256070 41267286 - Gba2 protein_coding retained_intron MGP_CASTEiJ_T0065360.1 MGP_CASTEiJ_G0027352.1 mouse_genomes_project 4 41257535 41258784 - Gba2 protein_coding retained_intron MGP_CASTEiJ_T0065361.1 MGP_CASTEiJ_G0027352.1 mouse_genomes_project 4 41259504 41263224 - Gba2 protein_coding processed_transcript MGP_CASTEiJ_T0065362.1 MGP_CASTEiJ_G0027352.1 mouse_genomes_project 4 41259918 41267833 - MGP_CASTEiJ_P0065362 Gba2 protein_coding protein_coding MGP_CASTEiJ_T0066300.1 MGP_CASTEiJ_G0027575.1 mouse_genomes_project 4 86805375 86816196 - MGP_CASTEiJ_P0066300 Cdkn2a protein_coding protein_coding MGP_CASTEiJ_T0066301.1 MGP_CASTEiJ_G0027575.1 mouse_genomes_project 4 86805447 86833109 - MGP_CASTEiJ_P0066301 Cdkn2a protein_coding protein_coding MGP_CASTEiJ_T0069877.1 MGP_CASTEiJ_G0028323.1 mouse_genomes_project 4 154819985 154882398 + MGP_CASTEiJ_P0069877 Morn1 protein_coding protein_coding MGP_CASTEiJ_T0069878.1 MGP_CASTEiJ_G0028323.1 mouse_genomes_project 4 154819985 154847490 + MGP_CASTEiJ_P0069878 Morn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069879.1 MGP_CASTEiJ_G0028323.1 mouse_genomes_project 4 154819997 154826476 + MGP_CASTEiJ_P0069879 Morn1 protein_coding protein_coding MGP_CASTEiJ_T0069880.1 MGP_CASTEiJ_G0028323.1 mouse_genomes_project 4 154820011 154826757 + MGP_CASTEiJ_P0069880 Morn1 protein_coding protein_coding MGP_CASTEiJ_T0069881.1 MGP_CASTEiJ_G0028323.1 mouse_genomes_project 4 154820022 154877633 + Morn1 protein_coding processed_transcript MGP_CASTEiJ_T0069882.1 MGP_CASTEiJ_G0028323.1 mouse_genomes_project 4 154820036 154877611 + Morn1 protein_coding processed_transcript MGP_CASTEiJ_T0069883.1 MGP_CASTEiJ_G0028323.1 mouse_genomes_project 4 154835754 154864987 + Morn1 protein_coding retained_intron MGP_CASTEiJ_T0069884.1 MGP_CASTEiJ_G0028323.1 mouse_genomes_project 4 154845998 154864551 + Morn1 protein_coding retained_intron MGP_CASTEiJ_T0004406.1 MGP_CASTEiJ_G0003836.1 mouse_genomes_project 4 124318724 124320485 + Gm12946 antisense antisense MGP_CASTEiJ_T0011243.1 MGP_CASTEiJ_G0009431.1 mouse_genomes_project 4 92049190 92049450 - Gm26410 misc_RNA misc_RNA MGP_CASTEiJ_T0066677.1 MGP_CASTEiJ_G0027658.1 mouse_genomes_project 4 104612209 104628089 + MGP_CASTEiJ_P0066677 Fam151a protein_coding protein_coding MGP_CASTEiJ_T0066678.1 MGP_CASTEiJ_G0027658.1 mouse_genomes_project 4 104612387 104627880 + MGP_CASTEiJ_P0066678 Fam151a protein_coding unknown_likely_coding MGP_CASTEiJ_T0066679.1 MGP_CASTEiJ_G0027658.1 mouse_genomes_project 4 104612387 104628030 + MGP_CASTEiJ_P0066679 Fam151a protein_coding unknown_likely_coding MGP_CASTEiJ_T0014055.1 MGP_CASTEiJ_G0012218.1 mouse_genomes_project 4 38891164 38891379 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065434.1 MGP_CASTEiJ_G0027371.1 mouse_genomes_project 4 41862226 41907029 - MGP_CASTEiJ_P0065434 Rnf38 protein_coding protein_coding MGP_CASTEiJ_T0065435.1 MGP_CASTEiJ_G0027371.1 mouse_genomes_project 4 41865435 41949460 - MGP_CASTEiJ_P0065435 Rnf38 protein_coding protein_coding MGP_CASTEiJ_T0065436.1 MGP_CASTEiJ_G0027371.1 mouse_genomes_project 4 41865439 41907069 - MGP_CASTEiJ_P0065436 Rnf38 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065437.1 MGP_CASTEiJ_G0027371.1 mouse_genomes_project 4 41865521 41874917 - Rnf38 protein_coding processed_transcript MGP_CASTEiJ_T0065438.1 MGP_CASTEiJ_G0027371.1 mouse_genomes_project 4 41865523 41874796 - Rnf38 protein_coding processed_transcript MGP_CASTEiJ_T0065439.1 MGP_CASTEiJ_G0027371.1 mouse_genomes_project 4 41876380 41907613 - MGP_CASTEiJ_P0065439 Rnf38 protein_coding protein_coding MGP_CASTEiJ_T0065440.1 MGP_CASTEiJ_G0027371.1 mouse_genomes_project 4 41876434 41896559 - MGP_CASTEiJ_P0065440 Rnf38 protein_coding protein_coding MGP_CASTEiJ_T0065441.1 MGP_CASTEiJ_G0027371.1 mouse_genomes_project 4 41876478 41907426 - MGP_CASTEiJ_P0065441 Rnf38 protein_coding protein_coding MGP_CASTEiJ_T0065442.1 MGP_CASTEiJ_G0027371.1 mouse_genomes_project 4 41886602 41906956 - Rnf38 protein_coding processed_transcript MGP_CASTEiJ_T0065443.1 MGP_CASTEiJ_G0027371.1 mouse_genomes_project 4 41886609 41976765 - Rnf38 protein_coding processed_transcript MGP_CASTEiJ_T0065444.1 MGP_CASTEiJ_G0027371.1 mouse_genomes_project 4 41886638 41907343 - Rnf38 protein_coding processed_transcript MGP_CASTEiJ_T0065445.1 MGP_CASTEiJ_G0027371.1 mouse_genomes_project 4 41896477 41906913 - Rnf38 protein_coding processed_transcript MGP_CASTEiJ_T0065106.1 MGP_CASTEiJ_G0027312.1 mouse_genomes_project 4 38931590 38955205 - MGP_CASTEiJ_P0065106 Dcaf12 protein_coding protein_coding MGP_CASTEiJ_T0066474.1 MGP_CASTEiJ_G0027614.1 mouse_genomes_project 4 96990177 96991537 + MGP_CASTEiJ_P0066474 Gm12689 protein_coding protein_coding MGP_CASTEiJ_T0067644.1 MGP_CASTEiJ_G0027854.1 mouse_genomes_project 4 119556293 119568365 - MGP_CASTEiJ_P0067644 Gm12887 protein_coding protein_coding MGP_CASTEiJ_T0065077.1 MGP_CASTEiJ_G0027305.1 mouse_genomes_project 4 38544296 38560913 + MGP_CASTEiJ_P0065077 Chmp5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067543.1 MGP_CASTEiJ_G0027828.1 mouse_genomes_project 4 117283390 117317497 + MGP_CASTEiJ_P0067543 Zmynd12 protein_coding protein_coding MGP_CASTEiJ_T0067544.1 MGP_CASTEiJ_G0027828.1 mouse_genomes_project 4 117283414 117317413 + MGP_CASTEiJ_P0067544 Zmynd12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067545.1 MGP_CASTEiJ_G0027828.1 mouse_genomes_project 4 117283448 117313843 + Zmynd12 protein_coding processed_transcript MGP_CASTEiJ_T0067546.1 MGP_CASTEiJ_G0027828.1 mouse_genomes_project 4 117306603 117332301 + Zmynd12 protein_coding processed_transcript MGP_CASTEiJ_T0007692.1 MGP_CASTEiJ_G0006307.1 mouse_genomes_project 4 84760492 84761148 + lincRNA lincRNA MGP_CASTEiJ_T0007614.1 MGP_CASTEiJ_G0006237.1 mouse_genomes_project 4 8626969 8634751 + Gm26895 lincRNA lincRNA MGP_CASTEiJ_T0004369.1 MGP_CASTEiJ_G0003808.1 mouse_genomes_project 4 105757927 105774940 - Lrp8os2 antisense antisense MGP_CASTEiJ_T0004370.1 MGP_CASTEiJ_G0003808.1 mouse_genomes_project 4 105757927 105762822 - Lrp8os2 antisense antisense MGP_CASTEiJ_T0004371.1 MGP_CASTEiJ_G0003808.1 mouse_genomes_project 4 105759867 105774892 - Lrp8os2 antisense antisense MGP_CASTEiJ_T0004372.1 MGP_CASTEiJ_G0003808.1 mouse_genomes_project 4 105762681 105774928 - Lrp8os2 antisense antisense MGP_CASTEiJ_T0101075.1 MGP_CASTEiJ_G0037988.1 mouse_genomes_project 4 114829303 114829382 - Snord55 snoRNA snoRNA MGP_CASTEiJ_T0068317.1 MGP_CASTEiJ_G0027994.1 mouse_genomes_project 4 130710228 130744905 - MGP_CASTEiJ_P0068317 Gmeb1 protein_coding protein_coding MGP_CASTEiJ_T0068318.1 MGP_CASTEiJ_G0027994.1 mouse_genomes_project 4 130712161 130755271 - MGP_CASTEiJ_P0068318 Gmeb1 protein_coding protein_coding MGP_CASTEiJ_T0068319.1 MGP_CASTEiJ_G0027994.1 mouse_genomes_project 4 130714245 130744261 - MGP_CASTEiJ_P0068319 Gmeb1 protein_coding protein_coding MGP_CASTEiJ_T0068320.1 MGP_CASTEiJ_G0027994.1 mouse_genomes_project 4 130714897 130755352 - MGP_CASTEiJ_P0068320 Gmeb1 protein_coding protein_coding MGP_CASTEiJ_T0068321.1 MGP_CASTEiJ_G0027994.1 mouse_genomes_project 4 130722022 130725617 - Gmeb1 protein_coding retained_intron MGP_CASTEiJ_T0068322.1 MGP_CASTEiJ_G0027994.1 mouse_genomes_project 4 130728294 130738633 - Gmeb1 protein_coding retained_intron MGP_CASTEiJ_T0068323.1 MGP_CASTEiJ_G0027994.1 mouse_genomes_project 4 130744172 130746663 - Gmeb1 protein_coding processed_transcript MGP_CASTEiJ_T0101068.1 MGP_CASTEiJ_G0037981.1 mouse_genomes_project 4 101357781 101357910 - Gm25877 snoRNA snoRNA MGP_CASTEiJ_T0101099.1 MGP_CASTEiJ_G0038012.1 mouse_genomes_project 4 153542839 153542971 + Gm25880 snoRNA snoRNA MGP_CASTEiJ_T0064770.1 MGP_CASTEiJ_G0027232.1 mouse_genomes_project 4 15649116 15928836 - MGP_CASTEiJ_P0064770 Cnbd1 protein_coding protein_coding MGP_CASTEiJ_T0065501.1 MGP_CASTEiJ_G0027379.1 mouse_genomes_project 4 42918650 42922278 - MGP_CASTEiJ_P0065501 protein_coding protein_coding MGP_CASTEiJ_T0010323.1 MGP_CASTEiJ_G0008511.1 mouse_genomes_project 4 122806644 122806753 + Mir698 miRNA miRNA MGP_CASTEiJ_T0065972.1 MGP_CASTEiJ_G0027498.1 mouse_genomes_project 4 60099846 60183045 + Col27a1 protein_coding retained_intron MGP_CASTEiJ_T0065973.1 MGP_CASTEiJ_G0027498.1 mouse_genomes_project 4 60100225 60226228 + MGP_CASTEiJ_P0065973 Col27a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065974.1 MGP_CASTEiJ_G0027498.1 mouse_genomes_project 4 60101254 60164977 + Col27a1 protein_coding retained_intron MGP_CASTEiJ_T0065975.1 MGP_CASTEiJ_G0027498.1 mouse_genomes_project 4 60101277 60226229 + MGP_CASTEiJ_P0065975 Col27a1 protein_coding protein_coding MGP_CASTEiJ_T0065976.1 MGP_CASTEiJ_G0027498.1 mouse_genomes_project 4 60120203 60224970 + MGP_CASTEiJ_P0065976 Col27a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065977.1 MGP_CASTEiJ_G0027498.1 mouse_genomes_project 4 60172601 60224977 + MGP_CASTEiJ_P0065977 Col27a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065978.1 MGP_CASTEiJ_G0027498.1 mouse_genomes_project 4 60173447 60225006 + Col27a1 protein_coding retained_intron MGP_CASTEiJ_T0065979.1 MGP_CASTEiJ_G0027498.1 mouse_genomes_project 4 60221478 60225395 + Col27a1 protein_coding processed_transcript MGP_CASTEiJ_T0004291.1 MGP_CASTEiJ_G0003748.1 mouse_genomes_project 4 3211510 3227475 + Gm11802 antisense antisense MGP_CASTEiJ_T0069619.1 MGP_CASTEiJ_G0028283.1 mouse_genomes_project 4 151538246 151546149 - MGP_CASTEiJ_P0069619 Zbtb48 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069620.1 MGP_CASTEiJ_G0028283.1 mouse_genomes_project 4 151538251 151546131 - MGP_CASTEiJ_P0069620 Zbtb48 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069621.1 MGP_CASTEiJ_G0028283.1 mouse_genomes_project 4 151538251 151546131 - MGP_CASTEiJ_P0069621 Zbtb48 protein_coding protein_coding MGP_CASTEiJ_T0069622.1 MGP_CASTEiJ_G0028283.1 mouse_genomes_project 4 151538253 151546141 - Zbtb48 protein_coding retained_intron MGP_CASTEiJ_T0069623.1 MGP_CASTEiJ_G0028283.1 mouse_genomes_project 4 151538277 151539094 - Zbtb48 protein_coding processed_transcript MGP_CASTEiJ_T0069624.1 MGP_CASTEiJ_G0028283.1 mouse_genomes_project 4 151539586 151540584 - Zbtb48 protein_coding processed_transcript MGP_CASTEiJ_T0069625.1 MGP_CASTEiJ_G0028283.1 mouse_genomes_project 4 151540069 151544922 - MGP_CASTEiJ_P0069625 Zbtb48 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069626.1 MGP_CASTEiJ_G0028283.1 mouse_genomes_project 4 151540963 151544525 - Zbtb48 protein_coding retained_intron MGP_CASTEiJ_T0069627.1 MGP_CASTEiJ_G0028283.1 mouse_genomes_project 4 151544955 151546107 - MGP_CASTEiJ_P0069627 Zbtb48 protein_coding protein_coding MGP_CASTEiJ_T0068594.1 MGP_CASTEiJ_G0028050.1 mouse_genomes_project 4 132959205 132962203 - MGP_CASTEiJ_P0068594 Grrp1 protein_coding protein_coding MGP_CASTEiJ_T0068595.1 MGP_CASTEiJ_G0028050.1 mouse_genomes_project 4 132959802 132961120 - Grrp1 protein_coding processed_transcript MGP_CASTEiJ_T0010357.1 MGP_CASTEiJ_G0008545.1 mouse_genomes_project 4 155848111 155848201 - Mir200a miRNA miRNA MGP_CASTEiJ_T0017289.1 MGP_CASTEiJ_G0014852.1 mouse_genomes_project 4 21800328 21804992 - C230012O17Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017290.1 MGP_CASTEiJ_G0014852.1 mouse_genomes_project 4 21804295 21805358 - C230012O17Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017327.1 MGP_CASTEiJ_G0014879.1 mouse_genomes_project 4 101307038 101319920 - Gm12720 processed_transcript processed_transcript MGP_CASTEiJ_T0069342.1 MGP_CASTEiJ_G0028235.1 mouse_genomes_project 4 147293439 147301711 - MGP_CASTEiJ_P0069342 Fbxo44 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069343.1 MGP_CASTEiJ_G0028235.1 mouse_genomes_project 4 147293903 147301494 - MGP_CASTEiJ_P0069343 Fbxo44 protein_coding protein_coding MGP_CASTEiJ_T0069344.1 MGP_CASTEiJ_G0028235.1 mouse_genomes_project 4 147294075 147301674 - MGP_CASTEiJ_P0069344 Fbxo44 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069345.1 MGP_CASTEiJ_G0028235.1 mouse_genomes_project 4 147294173 147299253 - MGP_CASTEiJ_P0069345 Fbxo44 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069346.1 MGP_CASTEiJ_G0028235.1 mouse_genomes_project 4 147294208 147301492 - MGP_CASTEiJ_P0069346 Fbxo44 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069347.1 MGP_CASTEiJ_G0028235.1 mouse_genomes_project 4 147294208 147301266 - MGP_CASTEiJ_P0069347 Fbxo44 protein_coding protein_coding MGP_CASTEiJ_T0069348.1 MGP_CASTEiJ_G0028235.1 mouse_genomes_project 4 147296138 147301468 - MGP_CASTEiJ_P0069348 Fbxo44 protein_coding protein_coding MGP_CASTEiJ_T0069349.1 MGP_CASTEiJ_G0028235.1 mouse_genomes_project 4 147296787 147301466 - MGP_CASTEiJ_P0069349 Fbxo44 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069350.1 MGP_CASTEiJ_G0028235.1 mouse_genomes_project 4 147296807 147302099 - MGP_CASTEiJ_P0069350 Fbxo44 protein_coding protein_coding MGP_CASTEiJ_T0014269.1 MGP_CASTEiJ_G0012432.1 mouse_genomes_project 4 119268358 119268683 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101071.1 MGP_CASTEiJ_G0037984.1 mouse_genomes_project 4 107598050 107598181 + Gm22497 snoRNA snoRNA MGP_CASTEiJ_T0099809.1 MGP_CASTEiJ_G0036722.1 mouse_genomes_project 4 98887190 98887294 + Gm24468 snRNA snRNA MGP_CASTEiJ_T0017317.1 MGP_CASTEiJ_G0014871.1 mouse_genomes_project 4 86894063 86914266 + Gm12609 processed_transcript processed_transcript MGP_CASTEiJ_T0066506.1 MGP_CASTEiJ_G0027623.1 mouse_genomes_project 4 98718143 98718500 - MGP_CASTEiJ_P0066506 Gm10577 protein_coding protein_coding MGP_CASTEiJ_T0014319.1 MGP_CASTEiJ_G0012482.1 mouse_genomes_project 4 140455699 140456513 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011232.1 MGP_CASTEiJ_G0009420.1 mouse_genomes_project 4 43990555 43990822 + Gm23250 misc_RNA misc_RNA MGP_CASTEiJ_T0010307.1 MGP_CASTEiJ_G0008495.1 mouse_genomes_project 4 96183014 96183140 - Gm22625 miRNA miRNA MGP_CASTEiJ_T0067004.1 MGP_CASTEiJ_G0027712.1 mouse_genomes_project 4 109794588 109908945 + MGP_CASTEiJ_P0067004 Spata6 protein_coding protein_coding MGP_CASTEiJ_T0067005.1 MGP_CASTEiJ_G0027712.1 mouse_genomes_project 4 109794613 109847305 + MGP_CASTEiJ_P0067005 Spata6 protein_coding protein_coding MGP_CASTEiJ_T0067006.1 MGP_CASTEiJ_G0027712.1 mouse_genomes_project 4 109794614 109886656 + Spata6 protein_coding processed_transcript MGP_CASTEiJ_T0067007.1 MGP_CASTEiJ_G0027712.1 mouse_genomes_project 4 109794642 109859721 + MGP_CASTEiJ_P0067007 Spata6 protein_coding protein_coding MGP_CASTEiJ_T0067008.1 MGP_CASTEiJ_G0027712.1 mouse_genomes_project 4 109794663 109847365 + Spata6 protein_coding processed_transcript MGP_CASTEiJ_T0067009.1 MGP_CASTEiJ_G0027712.1 mouse_genomes_project 4 109794667 109860432 + Spata6 protein_coding processed_transcript MGP_CASTEiJ_T0067010.1 MGP_CASTEiJ_G0027712.1 mouse_genomes_project 4 109794707 109861015 + Spata6 protein_coding processed_transcript MGP_CASTEiJ_T0067011.1 MGP_CASTEiJ_G0027712.1 mouse_genomes_project 4 109794733 109860482 + Spata6 protein_coding processed_transcript MGP_CASTEiJ_T0067012.1 MGP_CASTEiJ_G0027712.1 mouse_genomes_project 4 109794809 109908987 + MGP_CASTEiJ_P0067012 Spata6 protein_coding protein_coding MGP_CASTEiJ_T0067013.1 MGP_CASTEiJ_G0027712.1 mouse_genomes_project 4 109856234 109907997 + Spata6 protein_coding processed_transcript MGP_CASTEiJ_T0067014.1 MGP_CASTEiJ_G0027712.1 mouse_genomes_project 4 109858995 109908937 + Spata6 protein_coding processed_transcript MGP_CASTEiJ_T0067015.1 MGP_CASTEiJ_G0027712.1 mouse_genomes_project 4 109859034 109861690 + Spata6 protein_coding processed_transcript MGP_CASTEiJ_T0067016.1 MGP_CASTEiJ_G0027712.1 mouse_genomes_project 4 109885626 109902686 + Spata6 protein_coding processed_transcript MGP_CASTEiJ_T0067017.1 MGP_CASTEiJ_G0027712.1 mouse_genomes_project 4 109902137 109908005 + Spata6 protein_coding processed_transcript MGP_CASTEiJ_T0099814.1 MGP_CASTEiJ_G0036727.1 mouse_genomes_project 4 106534280 106534387 - Gm25827 snRNA snRNA MGP_CASTEiJ_T0014298.1 MGP_CASTEiJ_G0012461.1 mouse_genomes_project 4 131444908 131446767 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007623.1 MGP_CASTEiJ_G0006245.1 mouse_genomes_project 4 16882021 16892095 - 4930598A11Rik lincRNA lincRNA MGP_CASTEiJ_T0069991.1 MGP_CASTEiJ_G0028340.1 mouse_genomes_project 4 155564500 155571002 - MGP_CASTEiJ_P0069991 Vwa1 protein_coding protein_coding MGP_CASTEiJ_T0069992.1 MGP_CASTEiJ_G0028340.1 mouse_genomes_project 4 155565584 155570978 - MGP_CASTEiJ_P0069992 Vwa1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0101046.1 MGP_CASTEiJ_G0037959.1 mouse_genomes_project 4 55000028 55000160 - Gm26144 snoRNA snoRNA MGP_CASTEiJ_T0099820.1 MGP_CASTEiJ_G0036733.1 mouse_genomes_project 4 114692618 114692717 + Gm22335 snRNA snRNA MGP_CASTEiJ_T0068468.1 MGP_CASTEiJ_G0028025.1 mouse_genomes_project 4 132159983 132169794 + MGP_CASTEiJ_P0068468 Kdf1 protein_coding protein_coding MGP_CASTEiJ_T0068469.1 MGP_CASTEiJ_G0028025.1 mouse_genomes_project 4 132160012 132171825 + MGP_CASTEiJ_P0068469 Kdf1 protein_coding protein_coding MGP_CASTEiJ_T0068470.1 MGP_CASTEiJ_G0028025.1 mouse_genomes_project 4 132160043 132169517 + MGP_CASTEiJ_P0068470 Kdf1 protein_coding protein_coding MGP_CASTEiJ_T0068471.1 MGP_CASTEiJ_G0028025.1 mouse_genomes_project 4 132160065 132171548 + MGP_CASTEiJ_P0068471 Kdf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068472.1 MGP_CASTEiJ_G0028025.1 mouse_genomes_project 4 132160075 132171820 + MGP_CASTEiJ_P0068472 Kdf1 protein_coding protein_coding MGP_CASTEiJ_T0068473.1 MGP_CASTEiJ_G0028025.1 mouse_genomes_project 4 132160103 132171822 + MGP_CASTEiJ_P0068473 Kdf1 protein_coding protein_coding MGP_CASTEiJ_T0069637.1 MGP_CASTEiJ_G0028286.1 mouse_genomes_project 4 151594068 151642786 + MGP_CASTEiJ_P0069637 Plekhg5 protein_coding protein_coding MGP_CASTEiJ_T0069638.1 MGP_CASTEiJ_G0028286.1 mouse_genomes_project 4 151609377 151642786 + MGP_CASTEiJ_P0069638 Plekhg5 protein_coding protein_coding MGP_CASTEiJ_T0069639.1 MGP_CASTEiJ_G0028286.1 mouse_genomes_project 4 151609419 151642322 + MGP_CASTEiJ_P0069639 Plekhg5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069640.1 MGP_CASTEiJ_G0028286.1 mouse_genomes_project 4 151624200 151642796 + MGP_CASTEiJ_P0069640 Plekhg5 protein_coding protein_coding MGP_CASTEiJ_T0069641.1 MGP_CASTEiJ_G0028286.1 mouse_genomes_project 4 151624200 151642786 + MGP_CASTEiJ_P0069641 Plekhg5 protein_coding protein_coding MGP_CASTEiJ_T0069642.1 MGP_CASTEiJ_G0028286.1 mouse_genomes_project 4 151631984 151633675 + Plekhg5 protein_coding retained_intron MGP_CASTEiJ_T0069643.1 MGP_CASTEiJ_G0028286.1 mouse_genomes_project 4 151635133 151642790 + Plekhg5 protein_coding retained_intron MGP_CASTEiJ_T0069644.1 MGP_CASTEiJ_G0028286.1 mouse_genomes_project 4 151635226 151635707 + Plekhg5 protein_coding retained_intron MGP_CASTEiJ_T0065730.1 MGP_CASTEiJ_G0027440.1 mouse_genomes_project 4 51921128 51973299 + MGP_CASTEiJ_P0065730 Fktn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065731.1 MGP_CASTEiJ_G0027440.1 mouse_genomes_project 4 51921131 51976323 + MGP_CASTEiJ_P0065731 Fktn protein_coding unknown_likely_coding MGP_CASTEiJ_T0065732.1 MGP_CASTEiJ_G0027440.1 mouse_genomes_project 4 51921351 51976323 + MGP_CASTEiJ_P0065732 Fktn protein_coding unknown_likely_coding MGP_CASTEiJ_T0065733.1 MGP_CASTEiJ_G0027440.1 mouse_genomes_project 4 51921491 51976323 + MGP_CASTEiJ_P0065733 Fktn protein_coding protein_coding MGP_CASTEiJ_T0067919.1 MGP_CASTEiJ_G0027919.1 mouse_genomes_project 4 125255820 125265733 + MGP_CASTEiJ_P0067919 Sfpq protein_coding protein_coding MGP_CASTEiJ_T0067920.1 MGP_CASTEiJ_G0027919.1 mouse_genomes_project 4 125257884 125261819 + Sfpq protein_coding processed_transcript MGP_CASTEiJ_T0067921.1 MGP_CASTEiJ_G0027919.1 mouse_genomes_project 4 125258028 125273489 + Sfpq protein_coding processed_transcript MGP_CASTEiJ_T0067922.1 MGP_CASTEiJ_G0027919.1 mouse_genomes_project 4 125260426 125261117 + Sfpq protein_coding processed_transcript MGP_CASTEiJ_T0067923.1 MGP_CASTEiJ_G0027919.1 mouse_genomes_project 4 125260458 125262518 + Sfpq protein_coding processed_transcript MGP_CASTEiJ_T0067924.1 MGP_CASTEiJ_G0027919.1 mouse_genomes_project 4 125260947 125262052 + Sfpq protein_coding processed_transcript MGP_CASTEiJ_T0098721.1 MGP_CASTEiJ_G0035652.1 mouse_genomes_project 4 18104570 18104926 + Gm22817 ribozyme ribozyme MGP_CASTEiJ_T0017323.1 MGP_CASTEiJ_G0014876.1 mouse_genomes_project 4 93088922 93092372 + Gm12707 processed_transcript processed_transcript MGP_CASTEiJ_T0066399.1 MGP_CASTEiJ_G0027599.1 mouse_genomes_project 4 94142608 94167806 - MGP_CASTEiJ_P0066399 Cyp2j9 protein_coding protein_coding MGP_CASTEiJ_T0066400.1 MGP_CASTEiJ_G0027599.1 mouse_genomes_project 4 94152538 94167806 - Cyp2j9 protein_coding retained_intron MGP_CASTEiJ_T0011486.1 MGP_CASTEiJ_G0009661.1 mouse_genomes_project 4 137968994 137972319 + MGP_CASTEiJ_P0011486 Pla2g2a polymorphic_pseudogene protein_coding MGP_CASTEiJ_T0011487.1 MGP_CASTEiJ_G0009661.1 mouse_genomes_project 4 137968997 137972322 + MGP_CASTEiJ_P0011487 Pla2g2a polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0011488.1 MGP_CASTEiJ_G0009661.1 mouse_genomes_project 4 137969013 137971006 + Pla2g2a polymorphic_pseudogene processed_transcript MGP_CASTEiJ_T0011489.1 MGP_CASTEiJ_G0009661.1 mouse_genomes_project 4 137970395 137972322 + Pla2g2a polymorphic_pseudogene retained_intron MGP_CASTEiJ_T0068974.1 MGP_CASTEiJ_G0009661.1 mouse_genomes_project 4 137969809 137972331 + MGP_CASTEiJ_P0068974 Pla2g2a polymorphic_pseudogene unknown_likely_coding MGP_CASTEiJ_T0068784.1 MGP_CASTEiJ_G0028092.1 mouse_genomes_project 4 135140473 135172824 + Tcea3 protein_coding processed_transcript MGP_CASTEiJ_T0068785.1 MGP_CASTEiJ_G0028092.1 mouse_genomes_project 4 135140696 135176494 + MGP_CASTEiJ_P0068785 Tcea3 protein_coding protein_coding MGP_CASTEiJ_T0068786.1 MGP_CASTEiJ_G0028092.1 mouse_genomes_project 4 135140717 135161938 + MGP_CASTEiJ_P0068786 Tcea3 protein_coding protein_coding MGP_CASTEiJ_T0068787.1 MGP_CASTEiJ_G0028092.1 mouse_genomes_project 4 135140744 135176491 + MGP_CASTEiJ_P0068787 Tcea3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068788.1 MGP_CASTEiJ_G0028092.1 mouse_genomes_project 4 135140744 135176491 + MGP_CASTEiJ_P0068788 Tcea3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014131.1 MGP_CASTEiJ_G0012294.1 mouse_genomes_project 4 71363039 71364317 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067479.1 MGP_CASTEiJ_G0027818.1 mouse_genomes_project 4 117024891 117040588 - MGP_CASTEiJ_P0067479 Ermap protein_coding protein_coding MGP_CASTEiJ_T0067480.1 MGP_CASTEiJ_G0027818.1 mouse_genomes_project 4 117025025 117040553 - MGP_CASTEiJ_P0067480 Ermap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067481.1 MGP_CASTEiJ_G0027818.1 mouse_genomes_project 4 117026984 117040553 - Ermap protein_coding retained_intron MGP_CASTEiJ_T0067482.1 MGP_CASTEiJ_G0027818.1 mouse_genomes_project 4 117027992 117040533 - Ermap protein_coding processed_transcript MGP_CASTEiJ_T0067483.1 MGP_CASTEiJ_G0027818.1 mouse_genomes_project 4 117035140 117039336 - MGP_CASTEiJ_P0067483 Ermap protein_coding protein_coding MGP_CASTEiJ_T0067484.1 MGP_CASTEiJ_G0027818.1 mouse_genomes_project 4 117035201 117040528 - MGP_CASTEiJ_P0067484 Ermap protein_coding protein_coding MGP_CASTEiJ_T0067485.1 MGP_CASTEiJ_G0027818.1 mouse_genomes_project 4 117037783 117040573 - MGP_CASTEiJ_P0067485 Ermap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067486.1 MGP_CASTEiJ_G0027818.1 mouse_genomes_project 4 117037916 117040570 - MGP_CASTEiJ_P0067486 Ermap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067487.1 MGP_CASTEiJ_G0027818.1 mouse_genomes_project 4 117037924 117040588 - MGP_CASTEiJ_P0067487 Ermap protein_coding protein_coding MGP_CASTEiJ_T0069741.1 MGP_CASTEiJ_G0028300.1 mouse_genomes_project 4 153624023 153628759 + MGP_CASTEiJ_P0069741 A430005L14Rik protein_coding protein_coding MGP_CASTEiJ_T0069742.1 MGP_CASTEiJ_G0028300.1 mouse_genomes_project 4 153624023 153628752 + MGP_CASTEiJ_P0069742 A430005L14Rik protein_coding protein_coding MGP_CASTEiJ_T0069743.1 MGP_CASTEiJ_G0028300.1 mouse_genomes_project 4 153624041 153626914 + A430005L14Rik protein_coding retained_intron MGP_CASTEiJ_T0069744.1 MGP_CASTEiJ_G0028300.1 mouse_genomes_project 4 153624052 153628366 + MGP_CASTEiJ_P0069744 A430005L14Rik protein_coding protein_coding MGP_CASTEiJ_T0069745.1 MGP_CASTEiJ_G0028300.1 mouse_genomes_project 4 153624052 153628656 + MGP_CASTEiJ_P0069745 A430005L14Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069746.1 MGP_CASTEiJ_G0028300.1 mouse_genomes_project 4 153624115 153627579 + A430005L14Rik protein_coding processed_transcript MGP_CASTEiJ_T0069747.1 MGP_CASTEiJ_G0028300.1 mouse_genomes_project 4 153626582 153627934 + A430005L14Rik protein_coding retained_intron MGP_CASTEiJ_T0007777.1 MGP_CASTEiJ_G0006368.1 mouse_genomes_project 4 129144948 129149989 - Gm26516 lincRNA lincRNA MGP_CASTEiJ_T0101030.1 MGP_CASTEiJ_G0037943.1 mouse_genomes_project 4 36858662 36858788 + Gm23607 snoRNA snoRNA MGP_CASTEiJ_T0067826.1 MGP_CASTEiJ_G0027902.1 mouse_genomes_project 4 124323352 124335387 - Sh3d21 protein_coding processed_transcript MGP_CASTEiJ_T0067827.1 MGP_CASTEiJ_G0027902.1 mouse_genomes_project 4 124323352 124335348 - MGP_CASTEiJ_P0067827 Sh3d21 protein_coding protein_coding MGP_CASTEiJ_T0067828.1 MGP_CASTEiJ_G0027902.1 mouse_genomes_project 4 124323352 124336213 - MGP_CASTEiJ_P0067828 Sh3d21 protein_coding protein_coding MGP_CASTEiJ_T0067829.1 MGP_CASTEiJ_G0027902.1 mouse_genomes_project 4 124323358 124335323 - Sh3d21 protein_coding processed_transcript MGP_CASTEiJ_T0067830.1 MGP_CASTEiJ_G0027902.1 mouse_genomes_project 4 124324308 124335378 - Sh3d21 protein_coding processed_transcript MGP_CASTEiJ_T0066605.1 MGP_CASTEiJ_G0027638.1 mouse_genomes_project 4 100939528 100985459 - MGP_CASTEiJ_P0066605 Slc35d1 protein_coding protein_coding MGP_CASTEiJ_T0066606.1 MGP_CASTEiJ_G0027638.1 mouse_genomes_project 4 100939535 100985098 - MGP_CASTEiJ_P0066606 Slc35d1 protein_coding protein_coding MGP_CASTEiJ_T0066607.1 MGP_CASTEiJ_G0027638.1 mouse_genomes_project 4 100971794 100985098 - MGP_CASTEiJ_P0066607 Slc35d1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066608.1 MGP_CASTEiJ_G0027638.1 mouse_genomes_project 4 100980615 100985094 - Slc35d1 protein_coding retained_intron MGP_CASTEiJ_T0066609.1 MGP_CASTEiJ_G0027638.1 mouse_genomes_project 4 100980838 100984967 - Slc35d1 protein_coding retained_intron MGP_CASTEiJ_T0067465.1 MGP_CASTEiJ_G0027812.1 mouse_genomes_project 4 116671376 116678229 + MGP_CASTEiJ_P0067465 Olfr1331 protein_coding protein_coding MGP_CASTEiJ_T0067466.1 MGP_CASTEiJ_G0027812.1 mouse_genomes_project 4 116676563 116678229 + MGP_CASTEiJ_P0067466 Olfr1331 protein_coding protein_coding MGP_CASTEiJ_T0066202.1 MGP_CASTEiJ_G0027545.1 mouse_genomes_project 4 82575699 82775613 + MGP_CASTEiJ_P0066202 Sh3gl2 protein_coding protein_coding MGP_CASTEiJ_T0066203.1 MGP_CASTEiJ_G0027545.1 mouse_genomes_project 4 82576015 82765146 + MGP_CASTEiJ_P0066203 Sh3gl2 protein_coding protein_coding MGP_CASTEiJ_T0066204.1 MGP_CASTEiJ_G0027545.1 mouse_genomes_project 4 82576043 83017197 + MGP_CASTEiJ_P0066204 Sh3gl2 protein_coding protein_coding MGP_CASTEiJ_T0066205.1 MGP_CASTEiJ_G0027545.1 mouse_genomes_project 4 82576109 82753645 + MGP_CASTEiJ_P0066205 Sh3gl2 protein_coding protein_coding MGP_CASTEiJ_T0066206.1 MGP_CASTEiJ_G0027545.1 mouse_genomes_project 4 82752289 82763452 + MGP_CASTEiJ_P0066206 Sh3gl2 protein_coding protein_coding MGP_CASTEiJ_T0099828.1 MGP_CASTEiJ_G0036741.1 mouse_genomes_project 4 122756213 122756316 - Gm24480 snRNA snRNA MGP_CASTEiJ_T0098946.1 MGP_CASTEiJ_G0035870.1 mouse_genomes_project 4 134241107 134241750 - Gm15979 sense_intronic sense_intronic MGP_CASTEiJ_T0067755.1 MGP_CASTEiJ_G0027885.1 mouse_genomes_project 4 122920763 122925327 + MGP_CASTEiJ_P0067755 Yrdc protein_coding protein_coding MGP_CASTEiJ_T0067756.1 MGP_CASTEiJ_G0027885.1 mouse_genomes_project 4 122920879 122924979 + MGP_CASTEiJ_P0067756 Yrdc protein_coding protein_coding MGP_CASTEiJ_T0067757.1 MGP_CASTEiJ_G0027885.1 mouse_genomes_project 4 122921990 122924808 + Yrdc protein_coding retained_intron MGP_CASTEiJ_T0065181.1 MGP_CASTEiJ_G0027329.1 mouse_genomes_project 4 40373463 40374076 + MGP_CASTEiJ_P0065181 Gm10931 protein_coding protein_coding MGP_CASTEiJ_T0013939.1 MGP_CASTEiJ_G0012102.1 mouse_genomes_project 4 2782851 2783726 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064765.1 MGP_CASTEiJ_G0027231.1 mouse_genomes_project 4 14619416 14904604 + MGP_CASTEiJ_P0064765 Mmp16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064766.1 MGP_CASTEiJ_G0027231.1 mouse_genomes_project 4 14619614 14769281 + MGP_CASTEiJ_P0064766 Mmp16 protein_coding protein_coding MGP_CASTEiJ_T0064767.1 MGP_CASTEiJ_G0027231.1 mouse_genomes_project 4 14619975 14906292 + MGP_CASTEiJ_P0064767 Mmp16 protein_coding protein_coding MGP_CASTEiJ_T0064768.1 MGP_CASTEiJ_G0027231.1 mouse_genomes_project 4 14620110 14830321 + Mmp16 protein_coding retained_intron MGP_CASTEiJ_T0064769.1 MGP_CASTEiJ_G0027231.1 mouse_genomes_project 4 14827391 14875940 + Mmp16 protein_coding retained_intron MGP_CASTEiJ_T0004455.1 MGP_CASTEiJ_G0003874.1 mouse_genomes_project 4 147197186 147198803 - Gm13201 antisense antisense MGP_CASTEiJ_T0004456.1 MGP_CASTEiJ_G0003874.1 mouse_genomes_project 4 147197401 147203256 - Gm13201 antisense antisense MGP_CASTEiJ_T0066132.1 MGP_CASTEiJ_G0027536.1 mouse_genomes_project 4 80062333 80127874 - MGP_CASTEiJ_P0066132 Zdhhc21 protein_coding protein_coding MGP_CASTEiJ_T0066133.1 MGP_CASTEiJ_G0027536.1 mouse_genomes_project 4 80067677 80127762 - MGP_CASTEiJ_P0066133 Zdhhc21 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066134.1 MGP_CASTEiJ_G0027536.1 mouse_genomes_project 4 80069839 80128159 - MGP_CASTEiJ_P0066134 Zdhhc21 protein_coding protein_coding MGP_CASTEiJ_T0066135.1 MGP_CASTEiJ_G0027536.1 mouse_genomes_project 4 80106813 80119030 - MGP_CASTEiJ_P0066135 Zdhhc21 protein_coding protein_coding MGP_CASTEiJ_T0066136.1 MGP_CASTEiJ_G0027536.1 mouse_genomes_project 4 80108871 80127755 - Zdhhc21 protein_coding retained_intron MGP_CASTEiJ_T0066137.1 MGP_CASTEiJ_G0027536.1 mouse_genomes_project 4 80115834 80127774 - MGP_CASTEiJ_P0066137 Zdhhc21 protein_coding protein_coding MGP_CASTEiJ_T0007629.1 MGP_CASTEiJ_G0006251.1 mouse_genomes_project 4 23444236 23512229 - 4930548K13Rik lincRNA lincRNA MGP_CASTEiJ_T0014323.1 MGP_CASTEiJ_G0012486.1 mouse_genomes_project 4 142950352 142951110 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004289.1 MGP_CASTEiJ_G0003747.1 mouse_genomes_project 4 2871657 2879500 - 4930430E12Rik antisense antisense MGP_CASTEiJ_T0004290.1 MGP_CASTEiJ_G0003747.1 mouse_genomes_project 4 2872294 2879500 - 4930430E12Rik antisense antisense MGP_CASTEiJ_T0069004.1 MGP_CASTEiJ_G0028143.1 mouse_genomes_project 4 138460299 138481085 - MGP_CASTEiJ_P0069004 Pqlc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069005.1 MGP_CASTEiJ_G0028143.1 mouse_genomes_project 4 138465857 138481108 - MGP_CASTEiJ_P0069005 Pqlc2 protein_coding protein_coding MGP_CASTEiJ_T0069006.1 MGP_CASTEiJ_G0028143.1 mouse_genomes_project 4 138465859 138481065 - MGP_CASTEiJ_P0069006 Pqlc2 protein_coding protein_coding MGP_CASTEiJ_T0069007.1 MGP_CASTEiJ_G0028143.1 mouse_genomes_project 4 138465859 138481078 - MGP_CASTEiJ_P0069007 Pqlc2 protein_coding protein_coding MGP_CASTEiJ_T0069008.1 MGP_CASTEiJ_G0028143.1 mouse_genomes_project 4 138468654 138481037 - MGP_CASTEiJ_P0069008 Pqlc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067763.1 MGP_CASTEiJ_G0027888.1 mouse_genomes_project 4 123000433 123017119 - MGP_CASTEiJ_P0067763 Cdca8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067764.1 MGP_CASTEiJ_G0027888.1 mouse_genomes_project 4 123001077 123017118 - MGP_CASTEiJ_P0067764 Cdca8 protein_coding protein_coding MGP_CASTEiJ_T0067765.1 MGP_CASTEiJ_G0027888.1 mouse_genomes_project 4 123001475 123016652 - Cdca8 protein_coding processed_transcript MGP_CASTEiJ_T0067766.1 MGP_CASTEiJ_G0027888.1 mouse_genomes_project 4 123005635 123017026 - Cdca8 protein_coding processed_transcript MGP_CASTEiJ_T0067767.1 MGP_CASTEiJ_G0027888.1 mouse_genomes_project 4 123005815 123017087 - Cdca8 protein_coding retained_intron MGP_CASTEiJ_T0067768.1 MGP_CASTEiJ_G0027888.1 mouse_genomes_project 4 123008691 123019498 - MGP_CASTEiJ_P0067768 Cdca8 protein_coding protein_coding MGP_CASTEiJ_T0066207.1 MGP_CASTEiJ_G0027546.1 mouse_genomes_project 4 83451665 83486549 + Adamtsl1 protein_coding retained_intron MGP_CASTEiJ_T0066208.1 MGP_CASTEiJ_G0027546.1 mouse_genomes_project 4 83451665 83834252 + MGP_CASTEiJ_P0066208 Adamtsl1 protein_coding protein_coding MGP_CASTEiJ_T0066209.1 MGP_CASTEiJ_G0027546.1 mouse_genomes_project 4 83451673 83656817 + MGP_CASTEiJ_P0066209 Adamtsl1 protein_coding protein_coding MGP_CASTEiJ_T0066210.1 MGP_CASTEiJ_G0027546.1 mouse_genomes_project 4 83451678 83834255 + MGP_CASTEiJ_P0066210 Adamtsl1 protein_coding protein_coding MGP_CASTEiJ_T0066211.1 MGP_CASTEiJ_G0027546.1 mouse_genomes_project 4 83451725 83598725 + MGP_CASTEiJ_P0066211 Adamtsl1 protein_coding protein_coding MGP_CASTEiJ_T0066212.1 MGP_CASTEiJ_G0027546.1 mouse_genomes_project 4 83451770 83637087 + Adamtsl1 protein_coding retained_intron MGP_CASTEiJ_T0066213.1 MGP_CASTEiJ_G0027546.1 mouse_genomes_project 4 83451786 83833685 + MGP_CASTEiJ_P0066213 Adamtsl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066214.1 MGP_CASTEiJ_G0027546.1 mouse_genomes_project 4 83486386 83512363 + Adamtsl1 protein_coding retained_intron MGP_CASTEiJ_T0066215.1 MGP_CASTEiJ_G0027546.1 mouse_genomes_project 4 83598418 83651990 + MGP_CASTEiJ_P0066215 Adamtsl1 protein_coding protein_coding MGP_CASTEiJ_T0066216.1 MGP_CASTEiJ_G0027546.1 mouse_genomes_project 4 83674511 83675125 + Adamtsl1 protein_coding processed_transcript MGP_CASTEiJ_T0066217.1 MGP_CASTEiJ_G0027546.1 mouse_genomes_project 4 83674788 83834252 + Adamtsl1 protein_coding retained_intron MGP_CASTEiJ_T0066218.1 MGP_CASTEiJ_G0027546.1 mouse_genomes_project 4 83736657 83788621 + MGP_CASTEiJ_P0066218 Adamtsl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066863.1 MGP_CASTEiJ_G0027687.1 mouse_genomes_project 4 106470080 106490791 + MGP_CASTEiJ_P0066863 Zcchc11 protein_coding protein_coding MGP_CASTEiJ_T0066864.1 MGP_CASTEiJ_G0027687.1 mouse_genomes_project 4 106470080 106574764 + MGP_CASTEiJ_P0066864 Zcchc11 protein_coding protein_coding MGP_CASTEiJ_T0066865.1 MGP_CASTEiJ_G0027687.1 mouse_genomes_project 4 106470666 106574770 + MGP_CASTEiJ_P0066865 Zcchc11 protein_coding protein_coding MGP_CASTEiJ_T0066866.1 MGP_CASTEiJ_G0027687.1 mouse_genomes_project 4 106490718 106536707 + MGP_CASTEiJ_P0066866 Zcchc11 protein_coding protein_coding MGP_CASTEiJ_T0066867.1 MGP_CASTEiJ_G0027687.1 mouse_genomes_project 4 106538862 106541674 + Zcchc11 protein_coding processed_transcript MGP_CASTEiJ_T0066868.1 MGP_CASTEiJ_G0027687.1 mouse_genomes_project 4 106555030 106561912 + Zcchc11 protein_coding processed_transcript MGP_CASTEiJ_T0066869.1 MGP_CASTEiJ_G0027687.1 mouse_genomes_project 4 106555129 106555997 + Zcchc11 protein_coding processed_transcript MGP_CASTEiJ_T0066870.1 MGP_CASTEiJ_G0027687.1 mouse_genomes_project 4 106555182 106555990 + Zcchc11 protein_coding processed_transcript MGP_CASTEiJ_T0066871.1 MGP_CASTEiJ_G0027687.1 mouse_genomes_project 4 106562710 106568576 + Zcchc11 protein_coding processed_transcript MGP_CASTEiJ_T0066872.1 MGP_CASTEiJ_G0027687.1 mouse_genomes_project 4 106568592 106574764 + Zcchc11 protein_coding processed_transcript MGP_CASTEiJ_T0066873.1 MGP_CASTEiJ_G0027687.1 mouse_genomes_project 4 106568876 106574142 + MGP_CASTEiJ_P0066873 Zcchc11 protein_coding protein_coding MGP_CASTEiJ_T0065498.1 MGP_CASTEiJ_G0027378.1 mouse_genomes_project 4 42843328 42895491 - MGP_CASTEiJ_P0065498 Fbxo10 protein_coding protein_coding MGP_CASTEiJ_T0065499.1 MGP_CASTEiJ_G0027378.1 mouse_genomes_project 4 42843329 42872462 - MGP_CASTEiJ_P0065499 Fbxo10 protein_coding protein_coding MGP_CASTEiJ_T0065500.1 MGP_CASTEiJ_G0027378.1 mouse_genomes_project 4 42856510 42869198 - Fbxo10 protein_coding processed_transcript MGP_CASTEiJ_T0067727.1 MGP_CASTEiJ_G0027877.1 mouse_genomes_project 4 122663984 122664858 - MGP_CASTEiJ_P0067727 3100002H09Rik protein_coding protein_coding MGP_CASTEiJ_T0064785.1 MGP_CASTEiJ_G0027240.1 mouse_genomes_project 4 16853818 16868847 + MGP_CASTEiJ_P0064785 Ttpa protein_coding protein_coding MGP_CASTEiJ_T0064786.1 MGP_CASTEiJ_G0027240.1 mouse_genomes_project 4 16854237 16879972 + MGP_CASTEiJ_P0064786 Ttpa protein_coding protein_coding MGP_CASTEiJ_T0064787.1 MGP_CASTEiJ_G0027240.1 mouse_genomes_project 4 16854240 16877943 + MGP_CASTEiJ_P0064787 Ttpa protein_coding protein_coding MGP_CASTEiJ_T0067721.1 MGP_CASTEiJ_G0027875.1 mouse_genomes_project 4 121901362 121921541 + MGP_CASTEiJ_P0067721 Rragc protein_coding protein_coding MGP_CASTEiJ_T0067722.1 MGP_CASTEiJ_G0027875.1 mouse_genomes_project 4 121901390 121921537 + MGP_CASTEiJ_P0067722 Rragc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067724.1 MGP_CASTEiJ_G0027875.1 mouse_genomes_project 4 121903000 121904905 + Rragc protein_coding processed_transcript MGP_CASTEiJ_T0067725.1 MGP_CASTEiJ_G0027875.1 mouse_genomes_project 4 121904820 121913897 + Rragc protein_coding retained_intron MGP_CASTEiJ_T0067726.1 MGP_CASTEiJ_G0027875.1 mouse_genomes_project 4 121905195 121920090 + Rragc protein_coding processed_transcript MGP_CASTEiJ_T0066402.1 MGP_CASTEiJ_G0027601.1 mouse_genomes_project 4 94301010 94364278 - MGP_CASTEiJ_P0066402 Gm12695 protein_coding protein_coding MGP_CASTEiJ_T0065196.1 MGP_CASTEiJ_G0027332.1 mouse_genomes_project 4 40584616 40595659 + MGP_CASTEiJ_P0065196 Dnajb5 protein_coding protein_coding MGP_CASTEiJ_T0065197.1 MGP_CASTEiJ_G0027332.1 mouse_genomes_project 4 40584616 40595659 + MGP_CASTEiJ_P0065197 Dnajb5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065198.1 MGP_CASTEiJ_G0027332.1 mouse_genomes_project 4 40584634 40585465 + Dnajb5 protein_coding processed_transcript MGP_CASTEiJ_T0065199.1 MGP_CASTEiJ_G0027332.1 mouse_genomes_project 4 40585071 40596725 + Dnajb5 protein_coding retained_intron MGP_CASTEiJ_T0065200.1 MGP_CASTEiJ_G0027332.1 mouse_genomes_project 4 40585160 40588030 + Dnajb5 protein_coding processed_transcript MGP_CASTEiJ_T0065723.1 MGP_CASTEiJ_G0027439.1 mouse_genomes_project 4 51842730 51913984 + MGP_CASTEiJ_P0065723 Fsd1l protein_coding protein_coding MGP_CASTEiJ_T0065724.1 MGP_CASTEiJ_G0027439.1 mouse_genomes_project 4 51842749 51863004 + Fsd1l protein_coding retained_intron MGP_CASTEiJ_T0065725.1 MGP_CASTEiJ_G0027439.1 mouse_genomes_project 4 51842750 51859141 + Fsd1l protein_coding retained_intron MGP_CASTEiJ_T0065726.1 MGP_CASTEiJ_G0027439.1 mouse_genomes_project 4 51842828 51907633 + MGP_CASTEiJ_P0065726 Fsd1l protein_coding protein_coding MGP_CASTEiJ_T0065727.1 MGP_CASTEiJ_G0027439.1 mouse_genomes_project 4 51842833 51907631 + MGP_CASTEiJ_P0065727 Fsd1l protein_coding protein_coding MGP_CASTEiJ_T0065728.1 MGP_CASTEiJ_G0027439.1 mouse_genomes_project 4 51842969 51871817 + MGP_CASTEiJ_P0065728 Fsd1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065729.1 MGP_CASTEiJ_G0027439.1 mouse_genomes_project 4 51854522 51913984 + MGP_CASTEiJ_P0065729 Fsd1l protein_coding protein_coding MGP_CASTEiJ_T0014247.1 MGP_CASTEiJ_G0012410.1 mouse_genomes_project 4 114602989 114603793 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007826.1 MGP_CASTEiJ_G0006405.1 mouse_genomes_project 4 147903939 147906801 + Gm13203 lincRNA lincRNA MGP_CASTEiJ_T0066327.1 MGP_CASTEiJ_G0027584.1 mouse_genomes_project 4 92185740 92222509 - MGP_CASTEiJ_P0066327 Plaa protein_coding unknown_likely_coding MGP_CASTEiJ_T0066328.1 MGP_CASTEiJ_G0027584.1 mouse_genomes_project 4 92186110 92195020 - Plaa protein_coding processed_transcript MGP_CASTEiJ_T0066329.1 MGP_CASTEiJ_G0027584.1 mouse_genomes_project 4 92187763 92222693 - MGP_CASTEiJ_P0066329 Plaa protein_coding protein_coding MGP_CASTEiJ_T0066330.1 MGP_CASTEiJ_G0027584.1 mouse_genomes_project 4 92190277 92204014 - MGP_CASTEiJ_P0066330 Plaa protein_coding protein_coding MGP_CASTEiJ_T0066331.1 MGP_CASTEiJ_G0027584.1 mouse_genomes_project 4 92192492 92203993 - Plaa protein_coding processed_transcript MGP_CASTEiJ_T0066332.1 MGP_CASTEiJ_G0027584.1 mouse_genomes_project 4 92198917 92222507 - MGP_CASTEiJ_P0066332 Plaa protein_coding unknown_likely_coding MGP_CASTEiJ_T0066333.1 MGP_CASTEiJ_G0027584.1 mouse_genomes_project 4 92206263 92222584 - Plaa protein_coding processed_transcript MGP_CASTEiJ_T0066334.1 MGP_CASTEiJ_G0027584.1 mouse_genomes_project 4 92210191 92222630 - Plaa protein_coding processed_transcript MGP_CASTEiJ_T0010351.1 MGP_CASTEiJ_G0008539.1 mouse_genomes_project 4 147284325 147284386 - Mir7022 miRNA miRNA MGP_CASTEiJ_T0066355.1 MGP_CASTEiJ_G0027590.1 mouse_genomes_project 4 92655061 92658255 - MGP_CASTEiJ_P0066355 Jun protein_coding protein_coding MGP_CASTEiJ_T0010292.1 MGP_CASTEiJ_G0008480.1 mouse_genomes_project 4 41966965 41967038 - Mir5106 miRNA miRNA MGP_CASTEiJ_T0010297.1 MGP_CASTEiJ_G0008485.1 mouse_genomes_project 4 55228250 55228320 - Mir32 miRNA miRNA MGP_CASTEiJ_T0069271.1 MGP_CASTEiJ_G0028218.1 mouse_genomes_project 4 144546968 144784069 - MGP_CASTEiJ_P0069271 Vps13d protein_coding protein_coding MGP_CASTEiJ_T0069272.1 MGP_CASTEiJ_G0028218.1 mouse_genomes_project 4 144546973 144779727 - MGP_CASTEiJ_P0069272 Vps13d protein_coding protein_coding MGP_CASTEiJ_T0069273.1 MGP_CASTEiJ_G0028218.1 mouse_genomes_project 4 144546973 144671129 - MGP_CASTEiJ_P0069273 Vps13d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069274.1 MGP_CASTEiJ_G0028218.1 mouse_genomes_project 4 144548943 144741043 - MGP_CASTEiJ_P0069274 Vps13d protein_coding protein_coding MGP_CASTEiJ_T0069275.1 MGP_CASTEiJ_G0028218.1 mouse_genomes_project 4 144549273 144558281 - Vps13d protein_coding processed_transcript MGP_CASTEiJ_T0069276.1 MGP_CASTEiJ_G0028218.1 mouse_genomes_project 4 144554623 144630016 - Vps13d protein_coding retained_intron MGP_CASTEiJ_T0069277.1 MGP_CASTEiJ_G0028218.1 mouse_genomes_project 4 144592613 144626905 - Vps13d protein_coding processed_transcript MGP_CASTEiJ_T0069278.1 MGP_CASTEiJ_G0028218.1 mouse_genomes_project 4 144628852 144637360 - Vps13d protein_coding retained_intron MGP_CASTEiJ_T0069279.1 MGP_CASTEiJ_G0028218.1 mouse_genomes_project 4 144649136 144651775 - Vps13d protein_coding retained_intron MGP_CASTEiJ_T0069280.1 MGP_CASTEiJ_G0028218.1 mouse_genomes_project 4 144762523 144784059 - Vps13d protein_coding retained_intron MGP_CASTEiJ_T0066076.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73065991 73386526 - MGP_CASTEiJ_P0066076 Ptprd protein_coding protein_coding MGP_CASTEiJ_T0066077.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73065992 73272074 - MGP_CASTEiJ_P0066077 Ptprd protein_coding protein_coding MGP_CASTEiJ_T0066078.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73069517 73742825 - MGP_CASTEiJ_P0066078 Ptprd protein_coding protein_coding MGP_CASTEiJ_T0066079.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73069656 73385976 - MGP_CASTEiJ_P0066079 Ptprd protein_coding protein_coding MGP_CASTEiJ_T0066080.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73069656 73385976 - MGP_CASTEiJ_P0066080 Ptprd protein_coding protein_coding MGP_CASTEiJ_T0066081.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73069656 73385976 - MGP_CASTEiJ_P0066081 Ptprd protein_coding protein_coding MGP_CASTEiJ_T0066082.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73069656 73385976 - MGP_CASTEiJ_P0066082 Ptprd protein_coding protein_coding MGP_CASTEiJ_T0066083.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73069656 73488994 - MGP_CASTEiJ_P0066083 Ptprd protein_coding protein_coding MGP_CASTEiJ_T0066084.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73069656 73385976 - MGP_CASTEiJ_P0066084 Ptprd protein_coding protein_coding MGP_CASTEiJ_T0066085.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73082001 73436263 - MGP_CASTEiJ_P0066085 Ptprd protein_coding unknown_likely_coding MGP_CASTEiJ_T0066086.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73082001 73436263 - MGP_CASTEiJ_P0066086 Ptprd protein_coding unknown_likely_coding MGP_CASTEiJ_T0066087.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73134475 73280252 - MGP_CASTEiJ_P0066087 Ptprd protein_coding unknown_likely_coding MGP_CASTEiJ_T0066088.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73218250 73239126 - Ptprd protein_coding retained_intron MGP_CASTEiJ_T0066089.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73220373 73222521 - MGP_CASTEiJ_P0066089 Ptprd protein_coding protein_coding MGP_CASTEiJ_T0066090.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73237094 73246328 - MGP_CASTEiJ_P0066090 Ptprd protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066091.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73271350 73272335 - MGP_CASTEiJ_P0066091 Ptprd protein_coding protein_coding MGP_CASTEiJ_T0066092.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73278970 75464546 - Ptprd protein_coding processed_transcript MGP_CASTEiJ_T0066093.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73279946 73385976 - Ptprd protein_coding processed_transcript MGP_CASTEiJ_T0066094.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73739849 75464518 - Ptprd protein_coding processed_transcript MGP_CASTEiJ_T0066095.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 73742076 75464390 - Ptprd protein_coding processed_transcript MGP_CASTEiJ_T0066096.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 74380117 75464390 - Ptprd protein_coding retained_intron MGP_CASTEiJ_T0066097.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 74556111 75466621 - Ptprd protein_coding processed_transcript MGP_CASTEiJ_T0066098.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 75166506 75464503 - Ptprd protein_coding processed_transcript MGP_CASTEiJ_T0066099.1 MGP_CASTEiJ_G0027528.1 mouse_genomes_project 4 75177154 75464494 - Ptprd protein_coding retained_intron MGP_CASTEiJ_T0004328.1 MGP_CASTEiJ_G0003777.1 mouse_genomes_project 4 45138466 45152501 - Gm12426 antisense antisense MGP_CASTEiJ_T0067293.1 MGP_CASTEiJ_G0027774.1 mouse_genomes_project 4 114798529 114800083 + MGP_CASTEiJ_P0067293 Tctex1d4 protein_coding protein_coding MGP_CASTEiJ_T0067294.1 MGP_CASTEiJ_G0027774.1 mouse_genomes_project 4 114798548 114800485 + MGP_CASTEiJ_P0067294 Tctex1d4 protein_coding protein_coding MGP_CASTEiJ_T0067295.1 MGP_CASTEiJ_G0027774.1 mouse_genomes_project 4 114798903 114800262 + MGP_CASTEiJ_P0067295 Tctex1d4 protein_coding protein_coding MGP_CASTEiJ_T0102329.1 MGP_CASTEiJ_G0039054.1 mouse_genomes_project 4 120188208 120202978 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010282.1 MGP_CASTEiJ_G0008470.1 mouse_genomes_project 4 19617924 19618027 + Gm24078 miRNA miRNA MGP_CASTEiJ_T0013973.1 MGP_CASTEiJ_G0012136.1 mouse_genomes_project 4 13785617 13786096 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004426.1 MGP_CASTEiJ_G0003852.1 mouse_genomes_project 4 134887989 134888392 - Gm24362 antisense antisense MGP_CASTEiJ_T0004295.1 MGP_CASTEiJ_G0003751.1 mouse_genomes_project 4 8112988 8114376 - Gm11831 antisense antisense MGP_CASTEiJ_T0014108.1 MGP_CASTEiJ_G0012271.1 mouse_genomes_project 4 59806444 59806699 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067464.1 MGP_CASTEiJ_G0027811.1 mouse_genomes_project 4 116638841 116640141 + MGP_CASTEiJ_P0067464 Olfr1335 protein_coding protein_coding MGP_CASTEiJ_T0064926.1 MGP_CASTEiJ_G0027266.1 mouse_genomes_project 4 30017936 30024591 + MGP_CASTEiJ_P0064926 Lyrm2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064927.1 MGP_CASTEiJ_G0027266.1 mouse_genomes_project 4 30017972 30019249 + Lyrm2 protein_coding retained_intron MGP_CASTEiJ_T0064928.1 MGP_CASTEiJ_G0027266.1 mouse_genomes_project 4 30017975 30018669 + Lyrm2 protein_coding retained_intron MGP_CASTEiJ_T0067579.1 MGP_CASTEiJ_G0027837.1 mouse_genomes_project 4 118331864 118380433 + Scmh1 protein_coding processed_transcript MGP_CASTEiJ_T0067580.1 MGP_CASTEiJ_G0027837.1 mouse_genomes_project 4 118331884 118459421 + MGP_CASTEiJ_P0067580 Scmh1 protein_coding protein_coding MGP_CASTEiJ_T0067581.1 MGP_CASTEiJ_G0027837.1 mouse_genomes_project 4 118331943 118389032 + Scmh1 protein_coding processed_transcript MGP_CASTEiJ_T0067582.1 MGP_CASTEiJ_G0027837.1 mouse_genomes_project 4 118331958 118374637 + Scmh1 protein_coding processed_transcript MGP_CASTEiJ_T0067583.1 MGP_CASTEiJ_G0027837.1 mouse_genomes_project 4 118331970 118458763 + MGP_CASTEiJ_P0067583 Scmh1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067584.1 MGP_CASTEiJ_G0027837.1 mouse_genomes_project 4 118332005 118388997 + MGP_CASTEiJ_P0067584 Scmh1 protein_coding protein_coding MGP_CASTEiJ_T0067585.1 MGP_CASTEiJ_G0027837.1 mouse_genomes_project 4 118373054 118459421 + MGP_CASTEiJ_P0067585 Scmh1 protein_coding protein_coding MGP_CASTEiJ_T0067586.1 MGP_CASTEiJ_G0027837.1 mouse_genomes_project 4 118379160 118459399 + MGP_CASTEiJ_P0067586 Scmh1 protein_coding protein_coding MGP_CASTEiJ_T0067587.1 MGP_CASTEiJ_G0027837.1 mouse_genomes_project 4 118387992 118458496 + MGP_CASTEiJ_P0067587 Scmh1 protein_coding protein_coding MGP_CASTEiJ_T0067588.1 MGP_CASTEiJ_G0027837.1 mouse_genomes_project 4 118429946 118459421 + Scmh1 protein_coding processed_transcript MGP_CASTEiJ_T0067589.1 MGP_CASTEiJ_G0027837.1 mouse_genomes_project 4 118431475 118451936 + MGP_CASTEiJ_P0067589 Scmh1 protein_coding protein_coding MGP_CASTEiJ_T0067590.1 MGP_CASTEiJ_G0027837.1 mouse_genomes_project 4 118447007 118459421 + Scmh1 protein_coding processed_transcript MGP_CASTEiJ_T0067591.1 MGP_CASTEiJ_G0027837.1 mouse_genomes_project 4 118447060 118459038 + Scmh1 protein_coding processed_transcript MGP_CASTEiJ_T0067592.1 MGP_CASTEiJ_G0027837.1 mouse_genomes_project 4 118457065 118458457 + Scmh1 protein_coding processed_transcript MGP_CASTEiJ_T0067593.1 MGP_CASTEiJ_G0027837.1 mouse_genomes_project 4 118458391 118459423 + Scmh1 protein_coding processed_transcript MGP_CASTEiJ_T0069140.1 MGP_CASTEiJ_G0028173.1 mouse_genomes_project 4 140765998 140785332 + MGP_CASTEiJ_P0069140 Fam131c protein_coding protein_coding MGP_CASTEiJ_T0101051.1 MGP_CASTEiJ_G0037964.1 mouse_genomes_project 4 61395894 61396023 + Gm23950 snoRNA snoRNA MGP_CASTEiJ_T0014051.1 MGP_CASTEiJ_G0012214.1 mouse_genomes_project 4 38253745 38254192 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010288.1 MGP_CASTEiJ_G0008476.1 mouse_genomes_project 4 34095451 34095528 + Mir873b miRNA miRNA MGP_CASTEiJ_T0017284.1 MGP_CASTEiJ_G0014849.1 mouse_genomes_project 4 8612883 8640565 + 1700123M08Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017285.1 MGP_CASTEiJ_G0014849.1 mouse_genomes_project 4 8612892 8640280 + 1700123M08Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017286.1 MGP_CASTEiJ_G0014849.1 mouse_genomes_project 4 8626462 8627966 + 1700123M08Rik processed_transcript processed_transcript MGP_CASTEiJ_T0001353.1 MGP_CASTEiJ_G0001283.1 mouse_genomes_project 4 2900010 2900285 + TEC TEC MGP_CASTEiJ_T0014032.1 MGP_CASTEiJ_G0012195.1 mouse_genomes_project 4 31800226 31800518 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068734.1 MGP_CASTEiJ_G0028080.1 mouse_genomes_project 4 134723487 134726419 - MGP_CASTEiJ_P0068734 Pnrc2 protein_coding protein_coding MGP_CASTEiJ_T0068735.1 MGP_CASTEiJ_G0028080.1 mouse_genomes_project 4 134724892 134726139 - MGP_CASTEiJ_P0068735 Pnrc2 protein_coding protein_coding MGP_CASTEiJ_T0068736.1 MGP_CASTEiJ_G0028080.1 mouse_genomes_project 4 134725019 134725630 - MGP_CASTEiJ_P0068736 Pnrc2 protein_coding protein_coding MGP_CASTEiJ_T0014038.1 MGP_CASTEiJ_G0012201.1 mouse_genomes_project 4 33390098 33391040 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013957.1 MGP_CASTEiJ_G0012120.1 mouse_genomes_project 4 8271699 8272552 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064634.1 MGP_CASTEiJ_G0027200.1 mouse_genomes_project 4 7641042 7664631 - MGP_CASTEiJ_P0064634 Ndufaf6 protein_coding protein_coding MGP_CASTEiJ_T0064635.1 MGP_CASTEiJ_G0027200.1 mouse_genomes_project 4 7641046 7647137 - Ndufaf6 protein_coding processed_transcript MGP_CASTEiJ_T0064636.1 MGP_CASTEiJ_G0027200.1 mouse_genomes_project 4 7641048 7664603 - MGP_CASTEiJ_P0064636 Ndufaf6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064637.1 MGP_CASTEiJ_G0027200.1 mouse_genomes_project 4 7641209 7664576 - Ndufaf6 protein_coding processed_transcript MGP_CASTEiJ_T0064638.1 MGP_CASTEiJ_G0027200.1 mouse_genomes_project 4 7647126 7664576 - Ndufaf6 protein_coding processed_transcript MGP_CASTEiJ_T0064639.1 MGP_CASTEiJ_G0027200.1 mouse_genomes_project 4 7650087 7664610 - Ndufaf6 protein_coding processed_transcript MGP_CASTEiJ_T0064640.1 MGP_CASTEiJ_G0027200.1 mouse_genomes_project 4 7658680 7664632 - Ndufaf6 protein_coding processed_transcript MGP_CASTEiJ_T0064641.1 MGP_CASTEiJ_G0027200.1 mouse_genomes_project 4 7661442 7664615 - Ndufaf6 protein_coding processed_transcript MGP_CASTEiJ_T0064772.1 MGP_CASTEiJ_G0027234.1 mouse_genomes_project 4 16348761 16402177 - MGP_CASTEiJ_P0064772 Cpne3 protein_coding protein_coding MGP_CASTEiJ_T0064773.1 MGP_CASTEiJ_G0027234.1 mouse_genomes_project 4 16349309 16402094 - MGP_CASTEiJ_P0064773 Cpne3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064774.1 MGP_CASTEiJ_G0027234.1 mouse_genomes_project 4 16369829 16372934 - Cpne3 protein_coding processed_transcript MGP_CASTEiJ_T0064775.1 MGP_CASTEiJ_G0027234.1 mouse_genomes_project 4 16375786 16402152 - Cpne3 protein_coding retained_intron MGP_CASTEiJ_T0065404.1 MGP_CASTEiJ_G0027364.1 mouse_genomes_project 4 41552772 41556429 - MGP_CASTEiJ_P0065404 protein_coding protein_coding MGP_CASTEiJ_T0069540.1 MGP_CASTEiJ_G0028269.1 mouse_genomes_project 4 149635455 150000996 + MGP_CASTEiJ_P0069540 Rere protein_coding protein_coding MGP_CASTEiJ_T0069541.1 MGP_CASTEiJ_G0028269.1 mouse_genomes_project 4 149635620 149636275 + Rere protein_coding processed_transcript MGP_CASTEiJ_T0069542.1 MGP_CASTEiJ_G0028269.1 mouse_genomes_project 4 149733743 149993416 + MGP_CASTEiJ_P0069542 Rere protein_coding unknown_likely_coding MGP_CASTEiJ_T0069543.1 MGP_CASTEiJ_G0028269.1 mouse_genomes_project 4 149767331 149996869 + MGP_CASTEiJ_P0069543 Rere protein_coding unknown_likely_coding MGP_CASTEiJ_T0069544.1 MGP_CASTEiJ_G0028269.1 mouse_genomes_project 4 149769566 149834130 + MGP_CASTEiJ_P0069544 Rere protein_coding protein_coding MGP_CASTEiJ_T0069545.1 MGP_CASTEiJ_G0028269.1 mouse_genomes_project 4 149831273 149996996 + MGP_CASTEiJ_P0069545 Rere protein_coding unknown_likely_coding MGP_CASTEiJ_T0069546.1 MGP_CASTEiJ_G0028269.1 mouse_genomes_project 4 149854246 150000992 + MGP_CASTEiJ_P0069546 Rere protein_coding protein_coding MGP_CASTEiJ_T0069547.1 MGP_CASTEiJ_G0028269.1 mouse_genomes_project 4 149943774 149944678 + Rere protein_coding processed_transcript MGP_CASTEiJ_T0069548.1 MGP_CASTEiJ_G0028269.1 mouse_genomes_project 4 149943843 149989442 + Rere protein_coding processed_transcript MGP_CASTEiJ_T0069549.1 MGP_CASTEiJ_G0028269.1 mouse_genomes_project 4 149994648 149997208 + MGP_CASTEiJ_P0069549 Rere protein_coding protein_coding MGP_CASTEiJ_T0066034.1 MGP_CASTEiJ_G0027517.1 mouse_genomes_project 4 63777107 63792351 + MGP_CASTEiJ_P0066034 Tlr4 protein_coding protein_coding MGP_CASTEiJ_T0066035.1 MGP_CASTEiJ_G0027517.1 mouse_genomes_project 4 63777136 63880084 + MGP_CASTEiJ_P0066035 Tlr4 protein_coding protein_coding MGP_CASTEiJ_T0066036.1 MGP_CASTEiJ_G0027517.1 mouse_genomes_project 4 63777142 63788981 + Tlr4 protein_coding processed_transcript MGP_CASTEiJ_T0066037.1 MGP_CASTEiJ_G0027517.1 mouse_genomes_project 4 63777332 63865698 + MGP_CASTEiJ_P0066037 Tlr4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066038.1 MGP_CASTEiJ_G0027517.1 mouse_genomes_project 4 63777722 63789170 + Tlr4 protein_coding processed_transcript MGP_CASTEiJ_T0004445.1 MGP_CASTEiJ_G0003867.1 mouse_genomes_project 4 141324826 141338842 + Fhad1os2 antisense antisense MGP_CASTEiJ_T0068643.1 MGP_CASTEiJ_G0028062.1 mouse_genomes_project 4 133492449 133518841 - MGP_CASTEiJ_P0068643 Ldlrap1 protein_coding protein_coding MGP_CASTEiJ_T0068644.1 MGP_CASTEiJ_G0028062.1 mouse_genomes_project 4 133497414 133500967 - Ldlrap1 protein_coding retained_intron MGP_CASTEiJ_T0068645.1 MGP_CASTEiJ_G0028062.1 mouse_genomes_project 4 133500276 133501708 - Ldlrap1 protein_coding retained_intron MGP_CASTEiJ_T0099849.1 MGP_CASTEiJ_G0036762.1 mouse_genomes_project 4 147734947 147735055 + Gm23318 snRNA snRNA MGP_CASTEiJ_T0065295.1 MGP_CASTEiJ_G0027343.1 mouse_genomes_project 4 41121653 41127783 + MGP_CASTEiJ_P0065295 Tesk1 protein_coding protein_coding MGP_CASTEiJ_T0065296.1 MGP_CASTEiJ_G0027343.1 mouse_genomes_project 4 41123036 41127514 + MGP_CASTEiJ_P0065296 Tesk1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065297.1 MGP_CASTEiJ_G0027343.1 mouse_genomes_project 4 41124298 41125104 + Tesk1 protein_coding retained_intron MGP_CASTEiJ_T0065298.1 MGP_CASTEiJ_G0027343.1 mouse_genomes_project 4 41124431 41125541 + Tesk1 protein_coding retained_intron MGP_CASTEiJ_T0065299.1 MGP_CASTEiJ_G0027343.1 mouse_genomes_project 4 41124673 41125735 + Tesk1 protein_coding retained_intron MGP_CASTEiJ_T0014190.1 MGP_CASTEiJ_G0012353.1 mouse_genomes_project 4 95137794 95138461 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098945.1 MGP_CASTEiJ_G0035869.1 mouse_genomes_project 4 129127032 129130618 + Gm12971 sense_intronic sense_intronic MGP_CASTEiJ_T0069310.1 MGP_CASTEiJ_G0028227.1 mouse_genomes_project 4 147103973 147105385 + MGP_CASTEiJ_P0069310 Nppb protein_coding protein_coding MGP_CASTEiJ_T0014085.1 MGP_CASTEiJ_G0012248.1 mouse_genomes_project 4 52002219 52002605 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066559.1 MGP_CASTEiJ_G0027633.1 mouse_genomes_project 4 100497413 100634160 + Sgip1 protein_coding retained_intron MGP_CASTEiJ_T0066560.1 MGP_CASTEiJ_G0027633.1 mouse_genomes_project 4 100518692 100734057 + MGP_CASTEiJ_P0066560 Sgip1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066561.1 MGP_CASTEiJ_G0027633.1 mouse_genomes_project 4 100519423 100735099 + MGP_CASTEiJ_P0066561 Sgip1 protein_coding protein_coding MGP_CASTEiJ_T0066562.1 MGP_CASTEiJ_G0027633.1 mouse_genomes_project 4 100519616 100627262 + Sgip1 protein_coding processed_transcript MGP_CASTEiJ_T0066563.1 MGP_CASTEiJ_G0027633.1 mouse_genomes_project 4 100519633 100734981 + MGP_CASTEiJ_P0066563 Sgip1 protein_coding protein_coding MGP_CASTEiJ_T0066564.1 MGP_CASTEiJ_G0027633.1 mouse_genomes_project 4 100519640 100633290 + MGP_CASTEiJ_P0066564 Sgip1 protein_coding protein_coding MGP_CASTEiJ_T0066565.1 MGP_CASTEiJ_G0027633.1 mouse_genomes_project 4 100519643 100624703 + Sgip1 protein_coding processed_transcript MGP_CASTEiJ_T0066566.1 MGP_CASTEiJ_G0027633.1 mouse_genomes_project 4 100519651 100734295 + MGP_CASTEiJ_P0066566 Sgip1 protein_coding protein_coding MGP_CASTEiJ_T0066567.1 MGP_CASTEiJ_G0027633.1 mouse_genomes_project 4 100519663 100633553 + Sgip1 protein_coding processed_transcript MGP_CASTEiJ_T0066568.1 MGP_CASTEiJ_G0027633.1 mouse_genomes_project 4 100519753 100678468 + MGP_CASTEiJ_P0066568 Sgip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066569.1 MGP_CASTEiJ_G0027633.1 mouse_genomes_project 4 100519813 100736743 + MGP_CASTEiJ_P0066569 Sgip1 protein_coding protein_coding MGP_CASTEiJ_T0066570.1 MGP_CASTEiJ_G0027633.1 mouse_genomes_project 4 100519844 100733197 + MGP_CASTEiJ_P0066570 Sgip1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066571.1 MGP_CASTEiJ_G0027633.1 mouse_genomes_project 4 100633897 100733721 + MGP_CASTEiJ_P0066571 Sgip1 protein_coding protein_coding MGP_CASTEiJ_T0066572.1 MGP_CASTEiJ_G0027633.1 mouse_genomes_project 4 100680643 100688083 + Sgip1 protein_coding processed_transcript MGP_CASTEiJ_T0066573.1 MGP_CASTEiJ_G0027633.1 mouse_genomes_project 4 100686533 100688256 + Sgip1 protein_coding processed_transcript MGP_CASTEiJ_T0066574.1 MGP_CASTEiJ_G0027633.1 mouse_genomes_project 4 100723507 100731297 + Sgip1 protein_coding processed_transcript MGP_CASTEiJ_T0007807.1 MGP_CASTEiJ_G0006387.1 mouse_genomes_project 4 136116949 136122956 - Gm13003 lincRNA lincRNA MGP_CASTEiJ_T0007768.1 MGP_CASTEiJ_G0006363.1 mouse_genomes_project 4 127523645 127525491 + Gm15906 lincRNA lincRNA MGP_CASTEiJ_T0014200.1 MGP_CASTEiJ_G0012363.1 mouse_genomes_project 4 97327584 97328290 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014015.1 MGP_CASTEiJ_G0012178.1 mouse_genomes_project 4 26194780 26195501 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067786.1 MGP_CASTEiJ_G0027893.1 mouse_genomes_project 4 123179019 123207720 + MGP_CASTEiJ_P0067786 Meaf6 protein_coding protein_coding MGP_CASTEiJ_T0067787.1 MGP_CASTEiJ_G0027893.1 mouse_genomes_project 4 123179036 123204387 + MGP_CASTEiJ_P0067787 Meaf6 protein_coding protein_coding MGP_CASTEiJ_T0067788.1 MGP_CASTEiJ_G0027893.1 mouse_genomes_project 4 123179039 123203982 + MGP_CASTEiJ_P0067788 Meaf6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067789.1 MGP_CASTEiJ_G0027893.1 mouse_genomes_project 4 123179049 123204212 + MGP_CASTEiJ_P0067789 Meaf6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067790.1 MGP_CASTEiJ_G0027893.1 mouse_genomes_project 4 123179050 123184046 + Meaf6 protein_coding processed_transcript MGP_CASTEiJ_T0067791.1 MGP_CASTEiJ_G0027893.1 mouse_genomes_project 4 123179146 123203951 + MGP_CASTEiJ_P0067791 Meaf6 protein_coding protein_coding MGP_CASTEiJ_T0067792.1 MGP_CASTEiJ_G0027893.1 mouse_genomes_project 4 123180074 123203956 + MGP_CASTEiJ_P0067792 Meaf6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067793.1 MGP_CASTEiJ_G0027893.1 mouse_genomes_project 4 123183783 123198151 + Meaf6 protein_coding processed_transcript MGP_CASTEiJ_T0067794.1 MGP_CASTEiJ_G0027893.1 mouse_genomes_project 4 123202486 123203927 + Meaf6 protein_coding retained_intron MGP_CASTEiJ_T0017341.1 MGP_CASTEiJ_G0014889.1 mouse_genomes_project 4 120843692 120845954 + 4933421A08Rik processed_transcript processed_transcript MGP_CASTEiJ_T0014267.1 MGP_CASTEiJ_G0012430.1 mouse_genomes_project 4 119187082 119187455 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067671.1 MGP_CASTEiJ_G0027863.1 mouse_genomes_project 4 121045529 121059636 - MGP_CASTEiJ_P0067671 Ppie protein_coding unknown_likely_coding MGP_CASTEiJ_T0067672.1 MGP_CASTEiJ_G0027863.1 mouse_genomes_project 4 121045529 121059624 - MGP_CASTEiJ_P0067672 Ppie protein_coding protein_coding MGP_CASTEiJ_T0067673.1 MGP_CASTEiJ_G0027863.1 mouse_genomes_project 4 121045732 121056577 - Ppie protein_coding processed_transcript MGP_CASTEiJ_T0067674.1 MGP_CASTEiJ_G0027863.1 mouse_genomes_project 4 121046113 121058695 - Ppie protein_coding processed_transcript MGP_CASTEiJ_T0067675.1 MGP_CASTEiJ_G0027863.1 mouse_genomes_project 4 121056077 121059599 - Ppie protein_coding processed_transcript MGP_CASTEiJ_T0064999.1 MGP_CASTEiJ_G0027284.1 mouse_genomes_project 4 32095570 32110745 - MGP_CASTEiJ_P0064999 Gm136 protein_coding protein_coding MGP_CASTEiJ_T0013994.1 MGP_CASTEiJ_G0012157.1 mouse_genomes_project 4 22155175 22155875 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101078.1 MGP_CASTEiJ_G0037991.1 mouse_genomes_project 4 119044198 119044323 - Gm26186 snoRNA snoRNA MGP_CASTEiJ_T0065704.1 MGP_CASTEiJ_G0027433.1 mouse_genomes_project 4 51086567 51094969 - MGP_CASTEiJ_P0065704 Olfr272 protein_coding protein_coding MGP_CASTEiJ_T0065705.1 MGP_CASTEiJ_G0027433.1 mouse_genomes_project 4 51086567 51087529 - MGP_CASTEiJ_P0065705 Olfr272 protein_coding protein_coding MGP_CASTEiJ_T0066475.1 MGP_CASTEiJ_G0027615.1 mouse_genomes_project 4 97372999 97375334 + MGP_CASTEiJ_P0066475 Foxd3 protein_coding protein_coding MGP_CASTEiJ_T0017322.1 MGP_CASTEiJ_G0014875.1 mouse_genomes_project 4 93068075 93092365 - Gm830 processed_transcript processed_transcript MGP_CASTEiJ_T0004382.1 MGP_CASTEiJ_G0003816.1 mouse_genomes_project 4 114483789 114489600 + Gm12996 antisense antisense MGP_CASTEiJ_T0068721.1 MGP_CASTEiJ_G0028077.1 mouse_genomes_project 4 134558807 134585670 + MGP_CASTEiJ_P0068721 Il22ra1 protein_coding protein_coding MGP_CASTEiJ_T0014144.1 MGP_CASTEiJ_G0012307.1 mouse_genomes_project 4 74002148 74003185 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098947.1 MGP_CASTEiJ_G0035871.1 mouse_genomes_project 4 141490484 141496167 - Gm13053 sense_intronic sense_intronic MGP_CASTEiJ_T0007734.1 MGP_CASTEiJ_G0006338.1 mouse_genomes_project 4 106651397 106654922 - Gm17354 lincRNA lincRNA MGP_CASTEiJ_T0102335.1 MGP_CASTEiJ_G0039060.1 mouse_genomes_project 4 143040367 143040868 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0064788.1 MGP_CASTEiJ_G0027241.1 mouse_genomes_project 4 16893556 16921758 + MGP_CASTEiJ_P0064788 Ggh protein_coding protein_coding MGP_CASTEiJ_T0069334.1 MGP_CASTEiJ_G0028234.1 mouse_genomes_project 4 147283102 147292772 - MGP_CASTEiJ_P0069334 Fbxo6 protein_coding protein_coding MGP_CASTEiJ_T0069335.1 MGP_CASTEiJ_G0028234.1 mouse_genomes_project 4 147283102 147291815 - MGP_CASTEiJ_P0069335 Fbxo6 protein_coding protein_coding MGP_CASTEiJ_T0069336.1 MGP_CASTEiJ_G0028234.1 mouse_genomes_project 4 147283173 147291820 - MGP_CASTEiJ_P0069336 Fbxo6 protein_coding protein_coding MGP_CASTEiJ_T0069337.1 MGP_CASTEiJ_G0028234.1 mouse_genomes_project 4 147283174 147292696 - MGP_CASTEiJ_P0069337 Fbxo6 protein_coding protein_coding MGP_CASTEiJ_T0069338.1 MGP_CASTEiJ_G0028234.1 mouse_genomes_project 4 147283395 147292777 - MGP_CASTEiJ_P0069338 Fbxo6 protein_coding protein_coding MGP_CASTEiJ_T0069339.1 MGP_CASTEiJ_G0028234.1 mouse_genomes_project 4 147283478 147287121 - MGP_CASTEiJ_P0069339 Fbxo6 protein_coding protein_coding MGP_CASTEiJ_T0069340.1 MGP_CASTEiJ_G0028234.1 mouse_genomes_project 4 147283504 147291832 - MGP_CASTEiJ_P0069340 Fbxo6 protein_coding protein_coding MGP_CASTEiJ_T0069341.1 MGP_CASTEiJ_G0028234.1 mouse_genomes_project 4 147286845 147291553 - MGP_CASTEiJ_P0069341 Fbxo6 protein_coding protein_coding MGP_CASTEiJ_T0067638.1 MGP_CASTEiJ_G0027851.1 mouse_genomes_project 4 119107138 119142983 - MGP_CASTEiJ_P0067638 Rlf protein_coding protein_coding MGP_CASTEiJ_T0067639.1 MGP_CASTEiJ_G0027851.1 mouse_genomes_project 4 119107649 119172941 - MGP_CASTEiJ_P0067639 Rlf protein_coding protein_coding MGP_CASTEiJ_T0067640.1 MGP_CASTEiJ_G0027851.1 mouse_genomes_project 4 119107876 119172990 - MGP_CASTEiJ_P0067640 Rlf protein_coding unknown_likely_coding MGP_CASTEiJ_T0067641.1 MGP_CASTEiJ_G0027851.1 mouse_genomes_project 4 119131973 119142983 - MGP_CASTEiJ_P0067641 Rlf protein_coding protein_coding MGP_CASTEiJ_T0017368.1 MGP_CASTEiJ_G0014902.1 mouse_genomes_project 4 155156012 155180303 - 5830444B04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017369.1 MGP_CASTEiJ_G0014902.1 mouse_genomes_project 4 155166533 155173042 - 5830444B04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017370.1 MGP_CASTEiJ_G0014902.1 mouse_genomes_project 4 155166534 155180303 - 5830444B04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017371.1 MGP_CASTEiJ_G0014902.1 mouse_genomes_project 4 155167779 155173021 - 5830444B04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0067039.1 MGP_CASTEiJ_G0027718.1 mouse_genomes_project 4 110294245 110364304 - MGP_CASTEiJ_P0067039 Skint10 protein_coding protein_coding MGP_CASTEiJ_T0067040.1 MGP_CASTEiJ_G0027718.1 mouse_genomes_project 4 110358428 110364345 - MGP_CASTEiJ_P0067040 Skint10 protein_coding protein_coding MGP_CASTEiJ_T0067041.1 MGP_CASTEiJ_G0027718.1 mouse_genomes_project 4 110359853 110364306 - Skint10 protein_coding processed_transcript MGP_CASTEiJ_T0007602.1 MGP_CASTEiJ_G0006230.1 mouse_genomes_project 4 2099466 2105493 - Gm11782 lincRNA lincRNA MGP_CASTEiJ_T0065221.1 MGP_CASTEiJ_G0027336.1 mouse_genomes_project 4 40657553 40667640 - MGP_CASTEiJ_P0065221 Pigo protein_coding protein_coding MGP_CASTEiJ_T0065222.1 MGP_CASTEiJ_G0027336.1 mouse_genomes_project 4 40657553 40668316 - MGP_CASTEiJ_P0065222 Pigo protein_coding protein_coding MGP_CASTEiJ_T0065223.1 MGP_CASTEiJ_G0027336.1 mouse_genomes_project 4 40657825 40662266 - Pigo protein_coding processed_transcript MGP_CASTEiJ_T0065224.1 MGP_CASTEiJ_G0027336.1 mouse_genomes_project 4 40657827 40667633 - MGP_CASTEiJ_P0065224 Pigo protein_coding protein_coding MGP_CASTEiJ_T0065225.1 MGP_CASTEiJ_G0027336.1 mouse_genomes_project 4 40667262 40668027 - Pigo protein_coding processed_transcript MGP_CASTEiJ_T0066356.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93158775 93541256 + MGP_CASTEiJ_P0066356 Fggy protein_coding protein_coding MGP_CASTEiJ_T0066357.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93158779 93450377 + Fggy protein_coding processed_transcript MGP_CASTEiJ_T0066358.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93158787 93541252 + Fggy protein_coding processed_transcript MGP_CASTEiJ_T0066359.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93158788 93205013 + MGP_CASTEiJ_P0066359 Fggy protein_coding protein_coding MGP_CASTEiJ_T0066360.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93182440 93432567 + MGP_CASTEiJ_P0066360 Fggy protein_coding protein_coding MGP_CASTEiJ_T0066361.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93182503 93208440 + Fggy protein_coding processed_transcript MGP_CASTEiJ_T0066362.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93182508 93205019 + MGP_CASTEiJ_P0066362 Fggy protein_coding protein_coding MGP_CASTEiJ_T0066363.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93182513 93380180 + MGP_CASTEiJ_P0066363 Fggy protein_coding protein_coding MGP_CASTEiJ_T0066364.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93188601 93541121 + MGP_CASTEiJ_P0066364 Fggy protein_coding protein_coding MGP_CASTEiJ_T0066365.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93188601 93422402 + MGP_CASTEiJ_P0066365 Fggy protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066366.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93190272 93348064 + Fggy protein_coding processed_transcript MGP_CASTEiJ_T0066367.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93231020 93488920 + Fggy protein_coding processed_transcript MGP_CASTEiJ_T0066368.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93231027 93348121 + MGP_CASTEiJ_P0066368 Fggy protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066369.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93244463 93432980 + Fggy protein_coding processed_transcript MGP_CASTEiJ_T0066370.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93347606 93380189 + Fggy protein_coding processed_transcript MGP_CASTEiJ_T0066371.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93380252 93541256 + MGP_CASTEiJ_P0066371 Fggy protein_coding protein_coding MGP_CASTEiJ_T0066372.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93432975 93541121 + MGP_CASTEiJ_P0066372 Fggy protein_coding protein_coding MGP_CASTEiJ_T0066373.1 MGP_CASTEiJ_G0027591.1 mouse_genomes_project 4 93459451 93541251 + MGP_CASTEiJ_P0066373 Fggy protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0014238.1 MGP_CASTEiJ_G0012401.1 mouse_genomes_project 4 109871774 109872761 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067991.1 MGP_CASTEiJ_G0027937.1 mouse_genomes_project 4 127248286 127269635 + MGP_CASTEiJ_P0067991 Trim62 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067992.1 MGP_CASTEiJ_G0027937.1 mouse_genomes_project 4 127248294 127277171 + MGP_CASTEiJ_P0067992 Trim62 protein_coding protein_coding MGP_CASTEiJ_T0010301.1 MGP_CASTEiJ_G0008489.1 mouse_genomes_project 4 74137139 74137216 - Gm23159 miRNA miRNA MGP_CASTEiJ_T0066534.1 MGP_CASTEiJ_G0027629.1 mouse_genomes_project 4 99445242 99533861 + MGP_CASTEiJ_P0066534 Lepr protein_coding protein_coding MGP_CASTEiJ_T0066535.1 MGP_CASTEiJ_G0027629.1 mouse_genomes_project 4 99445242 99612951 + MGP_CASTEiJ_P0066535 Lepr protein_coding protein_coding MGP_CASTEiJ_T0066536.1 MGP_CASTEiJ_G0027629.1 mouse_genomes_project 4 99445242 99515186 + MGP_CASTEiJ_P0066536 Lepr protein_coding protein_coding MGP_CASTEiJ_T0066537.1 MGP_CASTEiJ_G0027629.1 mouse_genomes_project 4 99445245 99460602 + MGP_CASTEiJ_P0066537 Lepr protein_coding protein_coding MGP_CASTEiJ_T0066538.1 MGP_CASTEiJ_G0027629.1 mouse_genomes_project 4 99491066 99503790 + Lepr protein_coding processed_transcript MGP_CASTEiJ_T0066539.1 MGP_CASTEiJ_G0027629.1 mouse_genomes_project 4 99494577 99507909 + Lepr protein_coding processed_transcript MGP_CASTEiJ_T0066540.1 MGP_CASTEiJ_G0027629.1 mouse_genomes_project 4 99511824 99515084 + Lepr protein_coding processed_transcript MGP_CASTEiJ_T0065899.1 MGP_CASTEiJ_G0027481.1 mouse_genomes_project 4 59021400 59040287 - MGP_CASTEiJ_P0065899 Zfp37 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065900.1 MGP_CASTEiJ_G0027481.1 mouse_genomes_project 4 59021404 59040372 - MGP_CASTEiJ_P0065900 Zfp37 protein_coding protein_coding MGP_CASTEiJ_T0065901.1 MGP_CASTEiJ_G0027481.1 mouse_genomes_project 4 59024416 59040128 - Zfp37 protein_coding processed_transcript MGP_CASTEiJ_T0065902.1 MGP_CASTEiJ_G0027481.1 mouse_genomes_project 4 59024467 59039815 - Zfp37 protein_coding processed_transcript MGP_CASTEiJ_T0013972.1 MGP_CASTEiJ_G0012135.1 mouse_genomes_project 4 13458395 13459054 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004336.1 MGP_CASTEiJ_G0003785.1 mouse_genomes_project 4 60288722 60301775 + Aknaos antisense antisense MGP_CASTEiJ_T0014019.1 MGP_CASTEiJ_G0012182.1 mouse_genomes_project 4 28543089 28543561 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014118.1 MGP_CASTEiJ_G0012281.1 mouse_genomes_project 4 66328285 66333020 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069078.1 MGP_CASTEiJ_G0028162.1 mouse_genomes_project 4 140322640 140344806 + MGP_CASTEiJ_P0069078 Sdhb protein_coding protein_coding MGP_CASTEiJ_T0069079.1 MGP_CASTEiJ_G0028162.1 mouse_genomes_project 4 140322838 140342510 + Sdhb protein_coding processed_transcript MGP_CASTEiJ_T0069080.1 MGP_CASTEiJ_G0028162.1 mouse_genomes_project 4 140322840 140340002 + Sdhb protein_coding processed_transcript MGP_CASTEiJ_T0004457.1 MGP_CASTEiJ_G0003875.1 mouse_genomes_project 4 147763893 147765182 - Gm13209 antisense antisense MGP_CASTEiJ_T0099778.1 MGP_CASTEiJ_G0036691.1 mouse_genomes_project 4 34186716 34186823 + Gm23314 snRNA snRNA MGP_CASTEiJ_T0068744.1 MGP_CASTEiJ_G0028083.1 mouse_genomes_project 4 134806898 134825468 + MGP_CASTEiJ_P0068744 Hmgcl protein_coding protein_coding MGP_CASTEiJ_T0068745.1 MGP_CASTEiJ_G0028083.1 mouse_genomes_project 4 134806915 134823757 + Hmgcl protein_coding processed_transcript MGP_CASTEiJ_T0068746.1 MGP_CASTEiJ_G0028083.1 mouse_genomes_project 4 134808955 134821592 + Hmgcl protein_coding processed_transcript MGP_CASTEiJ_T0068747.1 MGP_CASTEiJ_G0028083.1 mouse_genomes_project 4 134822575 134825468 + Hmgcl protein_coding processed_transcript MGP_CASTEiJ_T0068748.1 MGP_CASTEiJ_G0028083.1 mouse_genomes_project 4 134823180 134825065 + Hmgcl protein_coding processed_transcript MGP_CASTEiJ_T0067855.1 MGP_CASTEiJ_G0027906.1 mouse_genomes_project 4 124473739 124504132 + MGP_CASTEiJ_P0067855 Col8a2 protein_coding protein_coding MGP_CASTEiJ_T0067856.1 MGP_CASTEiJ_G0027906.1 mouse_genomes_project 4 124473838 124504136 + MGP_CASTEiJ_P0067856 Col8a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067857.1 MGP_CASTEiJ_G0027906.1 mouse_genomes_project 4 124489160 124499600 + MGP_CASTEiJ_P0067857 Col8a2 protein_coding protein_coding MGP_CASTEiJ_T0004392.1 MGP_CASTEiJ_G0003825.1 mouse_genomes_project 4 116976719 116981835 - Gm12868 antisense antisense MGP_CASTEiJ_T0068845.1 MGP_CASTEiJ_G0028107.1 mouse_genomes_project 4 136246986 136269070 + MGP_CASTEiJ_P0068845 Wnt4 protein_coding protein_coding MGP_CASTEiJ_T0068222.1 MGP_CASTEiJ_G0027974.1 mouse_genomes_project 4 128724291 128725039 - Gm853 protein_coding processed_transcript MGP_CASTEiJ_T0068223.1 MGP_CASTEiJ_G0027974.1 mouse_genomes_project 4 128724291 128738425 - MGP_CASTEiJ_P0068223 Gm853 protein_coding protein_coding MGP_CASTEiJ_T0067682.1 MGP_CASTEiJ_G0027866.1 mouse_genomes_project 4 121166585 121183603 + MGP_CASTEiJ_P0067682 Heyl protein_coding protein_coding MGP_CASTEiJ_T0067683.1 MGP_CASTEiJ_G0027866.1 mouse_genomes_project 4 121166882 121173639 + Heyl protein_coding processed_transcript MGP_CASTEiJ_T0067684.1 MGP_CASTEiJ_G0027866.1 mouse_genomes_project 4 121172737 121179725 + Heyl protein_coding processed_transcript MGP_CASTEiJ_T0007711.1 MGP_CASTEiJ_G0006323.1 mouse_genomes_project 4 98988065 98989048 + Gm12801 lincRNA lincRNA MGP_CASTEiJ_T0101032.1 MGP_CASTEiJ_G0037945.1 mouse_genomes_project 4 38839002 38839079 - Gm22888 snoRNA snoRNA MGP_CASTEiJ_T0014120.1 MGP_CASTEiJ_G0012283.1 mouse_genomes_project 4 67098265 67099273 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017300.1 MGP_CASTEiJ_G0014859.1 mouse_genomes_project 4 41829706 41846747 + Gm12503 processed_transcript processed_transcript MGP_CASTEiJ_T0004346.1 MGP_CASTEiJ_G0003794.1 mouse_genomes_project 4 92578564 92629515 + Gm12694 antisense antisense MGP_CASTEiJ_T0007810.1 MGP_CASTEiJ_G0006390.1 mouse_genomes_project 4 138556755 138560783 - 2700016F22Rik lincRNA lincRNA MGP_CASTEiJ_T0064664.1 MGP_CASTEiJ_G0027204.1 mouse_genomes_project 4 7854105 7902110 - MGP_CASTEiJ_P0064664 Dpy19l4 protein_coding protein_coding MGP_CASTEiJ_T0064665.1 MGP_CASTEiJ_G0027204.1 mouse_genomes_project 4 7854105 7923151 - MGP_CASTEiJ_P0064665 Dpy19l4 protein_coding protein_coding MGP_CASTEiJ_T0064666.1 MGP_CASTEiJ_G0027204.1 mouse_genomes_project 4 7871998 7923151 - MGP_CASTEiJ_P0064666 Dpy19l4 protein_coding protein_coding MGP_CASTEiJ_T0064667.1 MGP_CASTEiJ_G0027204.1 mouse_genomes_project 4 7875214 7923089 - MGP_CASTEiJ_P0064667 Dpy19l4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064668.1 MGP_CASTEiJ_G0027204.1 mouse_genomes_project 4 7901253 7923061 - Dpy19l4 protein_coding processed_transcript MGP_CASTEiJ_T0064669.1 MGP_CASTEiJ_G0027204.1 mouse_genomes_project 4 7916629 7923114 - Dpy19l4 protein_coding processed_transcript MGP_CASTEiJ_T0067314.1 MGP_CASTEiJ_G0027778.1 mouse_genomes_project 4 114892159 114932402 - MGP_CASTEiJ_P0067314 Gm1661 protein_coding protein_coding MGP_CASTEiJ_T0067315.1 MGP_CASTEiJ_G0027778.1 mouse_genomes_project 4 114893921 114932402 - MGP_CASTEiJ_P0067315 Gm1661 protein_coding protein_coding MGP_CASTEiJ_T0067316.1 MGP_CASTEiJ_G0027778.1 mouse_genomes_project 4 114923614 114932610 - Gm1661 protein_coding processed_transcript MGP_CASTEiJ_T0017318.1 MGP_CASTEiJ_G0014872.1 mouse_genomes_project 4 86934209 86980449 + Gm12610 processed_transcript processed_transcript MGP_CASTEiJ_T0007746.1 MGP_CASTEiJ_G0006350.1 mouse_genomes_project 4 122334371 122343004 - 1700021L23Rik lincRNA lincRNA MGP_CASTEiJ_T0004473.1 MGP_CASTEiJ_G0003887.1 mouse_genomes_project 4 150239140 150269215 - 1700045H11Rik antisense antisense MGP_CASTEiJ_T0007641.1 MGP_CASTEiJ_G0006263.1 mouse_genomes_project 4 40673623 40675103 + Gm26643 lincRNA lincRNA MGP_CASTEiJ_T0067059.1 MGP_CASTEiJ_G0027727.1 mouse_genomes_project 4 112748333 112763575 + MGP_CASTEiJ_P0067059 Tal1 protein_coding protein_coding MGP_CASTEiJ_T0067060.1 MGP_CASTEiJ_G0027727.1 mouse_genomes_project 4 112749345 112755434 + MGP_CASTEiJ_P0067060 Tal1 protein_coding protein_coding MGP_CASTEiJ_T0067061.1 MGP_CASTEiJ_G0027727.1 mouse_genomes_project 4 112749718 112763043 + MGP_CASTEiJ_P0067061 Tal1 protein_coding protein_coding MGP_CASTEiJ_T0067062.1 MGP_CASTEiJ_G0027727.1 mouse_genomes_project 4 112751394 112762291 + MGP_CASTEiJ_P0067062 Tal1 protein_coding protein_coding MGP_CASTEiJ_T0067643.1 MGP_CASTEiJ_G0027853.1 mouse_genomes_project 4 119555517 119827217 - MGP_CASTEiJ_P0067643 protein_coding protein_coding MGP_CASTEiJ_T0064584.1 MGP_CASTEiJ_G0027191.1 mouse_genomes_project 4 3209723 3543471 - MGP_CASTEiJ_P0064584 Tox protein_coding protein_coding MGP_CASTEiJ_T0064585.1 MGP_CASTEiJ_G0027191.1 mouse_genomes_project 4 3211387 3212694 - Tox protein_coding processed_transcript MGP_CASTEiJ_T0064586.1 MGP_CASTEiJ_G0027191.1 mouse_genomes_project 4 3266794 3544229 - Tox protein_coding retained_intron MGP_CASTEiJ_T0064587.1 MGP_CASTEiJ_G0027191.1 mouse_genomes_project 4 3350290 3543175 - Tox protein_coding retained_intron MGP_CASTEiJ_T0067668.1 MGP_CASTEiJ_G0027861.1 mouse_genomes_project 4 121006658 121044506 + MGP_CASTEiJ_P0067668 Bmp8b protein_coding protein_coding MGP_CASTEiJ_T0067670.1 MGP_CASTEiJ_G0027861.1 mouse_genomes_project 4 121034747 121051802 + Bmp8b protein_coding processed_transcript MGP_CASTEiJ_T0066510.1 MGP_CASTEiJ_G0027625.1 mouse_genomes_project 4 98852935 98967674 - MGP_CASTEiJ_P0066510 Jak1 protein_coding protein_coding MGP_CASTEiJ_T0066511.1 MGP_CASTEiJ_G0027625.1 mouse_genomes_project 4 98854090 98889547 - MGP_CASTEiJ_P0066511 Jak1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066512.1 MGP_CASTEiJ_G0027625.1 mouse_genomes_project 4 98854822 98855693 - Jak1 protein_coding processed_transcript MGP_CASTEiJ_T0066513.1 MGP_CASTEiJ_G0027625.1 mouse_genomes_project 4 98880050 98885858 - Jak1 protein_coding processed_transcript MGP_CASTEiJ_T0066514.1 MGP_CASTEiJ_G0027625.1 mouse_genomes_project 4 98881480 98885882 - Jak1 protein_coding processed_transcript MGP_CASTEiJ_T0066515.1 MGP_CASTEiJ_G0027625.1 mouse_genomes_project 4 98882321 98967673 - Jak1 protein_coding processed_transcript MGP_CASTEiJ_T0066516.1 MGP_CASTEiJ_G0027625.1 mouse_genomes_project 4 98882361 98967615 - Jak1 protein_coding processed_transcript MGP_CASTEiJ_T0066517.1 MGP_CASTEiJ_G0027625.1 mouse_genomes_project 4 98892043 98967665 - MGP_CASTEiJ_P0066517 Jak1 protein_coding protein_coding MGP_CASTEiJ_T0066518.1 MGP_CASTEiJ_G0027625.1 mouse_genomes_project 4 98898232 98967618 - Jak1 protein_coding processed_transcript MGP_CASTEiJ_T0067296.1 MGP_CASTEiJ_G0027775.1 mouse_genomes_project 4 114800393 114805619 - MGP_CASTEiJ_P0067296 Plk3 protein_coding protein_coding MGP_CASTEiJ_T0067297.1 MGP_CASTEiJ_G0027775.1 mouse_genomes_project 4 114800393 114805166 - MGP_CASTEiJ_P0067297 Plk3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067298.1 MGP_CASTEiJ_G0027775.1 mouse_genomes_project 4 114800401 114805699 - Plk3 protein_coding processed_transcript MGP_CASTEiJ_T0007736.1 MGP_CASTEiJ_G0006340.1 mouse_genomes_project 4 112352185 112358925 + Gm12829 lincRNA lincRNA MGP_CASTEiJ_T0064890.1 MGP_CASTEiJ_G0027261.1 mouse_genomes_project 4 29150199 29208668 + MGP_CASTEiJ_P0064890 Map3k7 protein_coding protein_coding MGP_CASTEiJ_T0064891.1 MGP_CASTEiJ_G0027261.1 mouse_genomes_project 4 29150315 29164863 + MGP_CASTEiJ_P0064891 Map3k7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064892.1 MGP_CASTEiJ_G0027261.1 mouse_genomes_project 4 29150342 29208674 + MGP_CASTEiJ_P0064892 Map3k7 protein_coding protein_coding MGP_CASTEiJ_T0064893.1 MGP_CASTEiJ_G0027261.1 mouse_genomes_project 4 29162439 29172322 + Map3k7 protein_coding processed_transcript MGP_CASTEiJ_T0064894.1 MGP_CASTEiJ_G0027261.1 mouse_genomes_project 4 29164637 29169408 + Map3k7 protein_coding processed_transcript MGP_CASTEiJ_T0064895.1 MGP_CASTEiJ_G0027261.1 mouse_genomes_project 4 29166718 29176491 + Map3k7 protein_coding processed_transcript MGP_CASTEiJ_T0064896.1 MGP_CASTEiJ_G0027261.1 mouse_genomes_project 4 29169353 29201206 + Map3k7 protein_coding processed_transcript MGP_CASTEiJ_T0064897.1 MGP_CASTEiJ_G0027261.1 mouse_genomes_project 4 29176181 29204769 + Map3k7 protein_coding processed_transcript MGP_CASTEiJ_T0068838.1 MGP_CASTEiJ_G0028104.1 mouse_genomes_project 4 135845553 135848357 - MGP_CASTEiJ_P0068838 C1qa protein_coding protein_coding MGP_CASTEiJ_T0010287.1 MGP_CASTEiJ_G0008475.1 mouse_genomes_project 4 34095451 34095528 - Mir873a miRNA miRNA MGP_CASTEiJ_T0067831.1 MGP_CASTEiJ_G0027903.1 mouse_genomes_project 4 124336798 124374872 - MGP_CASTEiJ_P0067831 Thrap3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067832.1 MGP_CASTEiJ_G0027903.1 mouse_genomes_project 4 124336802 124374979 - MGP_CASTEiJ_P0067832 Thrap3 protein_coding protein_coding MGP_CASTEiJ_T0067833.1 MGP_CASTEiJ_G0027903.1 mouse_genomes_project 4 124338928 124339474 - Thrap3 protein_coding processed_transcript MGP_CASTEiJ_T0067834.1 MGP_CASTEiJ_G0027903.1 mouse_genomes_project 4 124338928 124347453 - MGP_CASTEiJ_P0067834 Thrap3 protein_coding protein_coding MGP_CASTEiJ_T0067835.1 MGP_CASTEiJ_G0027903.1 mouse_genomes_project 4 124339045 124345531 - MGP_CASTEiJ_P0067835 Thrap3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067836.1 MGP_CASTEiJ_G0027903.1 mouse_genomes_project 4 124347371 124350534 - MGP_CASTEiJ_P0067836 Thrap3 protein_coding protein_coding MGP_CASTEiJ_T0067837.1 MGP_CASTEiJ_G0027903.1 mouse_genomes_project 4 124352620 124366398 - MGP_CASTEiJ_P0067837 Thrap3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067838.1 MGP_CASTEiJ_G0027903.1 mouse_genomes_project 4 124352796 124373342 - MGP_CASTEiJ_P0067838 Thrap3 protein_coding protein_coding MGP_CASTEiJ_T0067839.1 MGP_CASTEiJ_G0027903.1 mouse_genomes_project 4 124352805 124374808 - MGP_CASTEiJ_P0067839 Thrap3 protein_coding protein_coding MGP_CASTEiJ_T0067840.1 MGP_CASTEiJ_G0027903.1 mouse_genomes_project 4 124358065 124374842 - Thrap3 protein_coding retained_intron MGP_CASTEiJ_T0067841.1 MGP_CASTEiJ_G0027903.1 mouse_genomes_project 4 124358246 124374878 - Thrap3 protein_coding retained_intron MGP_CASTEiJ_T0067842.1 MGP_CASTEiJ_G0027903.1 mouse_genomes_project 4 124358484 124374866 - MGP_CASTEiJ_P0067842 Thrap3 protein_coding protein_coding MGP_CASTEiJ_T0067843.1 MGP_CASTEiJ_G0027903.1 mouse_genomes_project 4 124358490 124374595 - MGP_CASTEiJ_P0067843 Thrap3 protein_coding protein_coding MGP_CASTEiJ_T0067844.1 MGP_CASTEiJ_G0027903.1 mouse_genomes_project 4 124358496 124374609 - MGP_CASTEiJ_P0067844 Thrap3 protein_coding protein_coding MGP_CASTEiJ_T0067845.1 MGP_CASTEiJ_G0027903.1 mouse_genomes_project 4 124365922 124374889 - Thrap3 protein_coding processed_transcript MGP_CASTEiJ_T0099799.1 MGP_CASTEiJ_G0036712.1 mouse_genomes_project 4 83436763 83436864 - Gm25811 snRNA snRNA MGP_CASTEiJ_T0011225.1 MGP_CASTEiJ_G0009413.1 mouse_genomes_project 4 15504084 15504361 + Gm25971 misc_RNA misc_RNA MGP_CASTEiJ_T0065617.1 MGP_CASTEiJ_G0027406.1 mouse_genomes_project 4 45298382 45389494 + MGP_CASTEiJ_P0065617 Tgfbr1 protein_coding protein_coding MGP_CASTEiJ_T0065618.1 MGP_CASTEiJ_G0027406.1 mouse_genomes_project 4 45298537 45359617 + MGP_CASTEiJ_P0065618 Tgfbr1 protein_coding protein_coding MGP_CASTEiJ_T0065619.1 MGP_CASTEiJ_G0027406.1 mouse_genomes_project 4 45298542 45362415 + MGP_CASTEiJ_P0065619 Tgfbr1 protein_coding protein_coding MGP_CASTEiJ_T0065620.1 MGP_CASTEiJ_G0027406.1 mouse_genomes_project 4 45298828 45306544 + Tgfbr1 protein_coding processed_transcript MGP_CASTEiJ_T0068835.1 MGP_CASTEiJ_G0028102.1 mouse_genomes_project 4 135828761 135835975 - MGP_CASTEiJ_P0068835 C1qb protein_coding protein_coding MGP_CASTEiJ_T0004338.1 MGP_CASTEiJ_G0003787.1 mouse_genomes_project 4 71386807 71388195 - A230083N12Rik antisense antisense MGP_CASTEiJ_T0068827.1 MGP_CASTEiJ_G0028101.1 mouse_genomes_project 4 135589219 135784424 - MGP_CASTEiJ_P0068827 Ephb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068828.1 MGP_CASTEiJ_G0028101.1 mouse_genomes_project 4 135589227 135784547 - MGP_CASTEiJ_P0068828 Ephb2 protein_coding protein_coding MGP_CASTEiJ_T0068829.1 MGP_CASTEiJ_G0028101.1 mouse_genomes_project 4 135595295 135784418 - MGP_CASTEiJ_P0068829 Ephb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068830.1 MGP_CASTEiJ_G0028101.1 mouse_genomes_project 4 135595301 135784515 - MGP_CASTEiJ_P0068830 Ephb2 protein_coding protein_coding MGP_CASTEiJ_T0068831.1 MGP_CASTEiJ_G0028101.1 mouse_genomes_project 4 135596366 135784402 - MGP_CASTEiJ_P0068831 Ephb2 protein_coding protein_coding MGP_CASTEiJ_T0068832.1 MGP_CASTEiJ_G0028101.1 mouse_genomes_project 4 135601423 135603561 - Ephb2 protein_coding retained_intron MGP_CASTEiJ_T0068833.1 MGP_CASTEiJ_G0028101.1 mouse_genomes_project 4 135603371 135638639 - MGP_CASTEiJ_P0068833 Ephb2 protein_coding protein_coding MGP_CASTEiJ_T0068834.1 MGP_CASTEiJ_G0028101.1 mouse_genomes_project 4 135717532 135784533 - Ephb2 protein_coding retained_intron MGP_CASTEiJ_T0011481.1 MGP_CASTEiJ_G0009660.1 mouse_genomes_project 4 116121451 116124228 + MGP_CASTEiJ_P0011481 Hyi polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0011482.1 MGP_CASTEiJ_G0009660.1 mouse_genomes_project 4 116121460 116124228 + MGP_CASTEiJ_P0011482 Hyi polymorphic_pseudogene nonsense_mediated_decay MGP_CASTEiJ_T0011483.1 MGP_CASTEiJ_G0009660.1 mouse_genomes_project 4 116121460 116122780 + Hyi polymorphic_pseudogene retained_intron MGP_CASTEiJ_T0011484.1 MGP_CASTEiJ_G0009660.1 mouse_genomes_project 4 116121475 116124228 + MGP_CASTEiJ_P0011484 Hyi polymorphic_pseudogene protein_coding MGP_CASTEiJ_T0011485.1 MGP_CASTEiJ_G0009660.1 mouse_genomes_project 4 116122799 116123979 + Hyi polymorphic_pseudogene retained_intron MGP_CASTEiJ_T0067412.1 MGP_CASTEiJ_G0009660.1 mouse_genomes_project 4 116121494 116124235 + MGP_CASTEiJ_P0067412 Hyi polymorphic_pseudogene unknown_likely_coding MGP_CASTEiJ_T0014207.1 MGP_CASTEiJ_G0012370.1 mouse_genomes_project 4 99632658 99634615 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065602.1 MGP_CASTEiJ_G0027403.1 mouse_genomes_project 4 44937003 44983491 - MGP_CASTEiJ_P0065602 Anks6 protein_coding protein_coding MGP_CASTEiJ_T0065603.1 MGP_CASTEiJ_G0027403.1 mouse_genomes_project 4 44937023 44983491 - MGP_CASTEiJ_P0065603 Anks6 protein_coding protein_coding MGP_CASTEiJ_T0065604.1 MGP_CASTEiJ_G0027403.1 mouse_genomes_project 4 44938353 44947083 - Anks6 protein_coding processed_transcript MGP_CASTEiJ_T0065605.1 MGP_CASTEiJ_G0027403.1 mouse_genomes_project 4 44960448 44962135 - Anks6 protein_coding processed_transcript MGP_CASTEiJ_T0067491.1 MGP_CASTEiJ_G0027820.1 mouse_genomes_project 4 117054834 117084360 - AU022252 protein_coding processed_transcript MGP_CASTEiJ_T0067493.1 MGP_CASTEiJ_G0027820.1 mouse_genomes_project 4 117071059 117084364 - MGP_CASTEiJ_P0067493 AU022252 protein_coding protein_coding MGP_CASTEiJ_T0067494.1 MGP_CASTEiJ_G0027820.1 mouse_genomes_project 4 117078052 117084330 - AU022252 protein_coding processed_transcript MGP_CASTEiJ_T0067495.1 MGP_CASTEiJ_G0027820.1 mouse_genomes_project 4 117078142 117084337 - AU022252 protein_coding processed_transcript MGP_CASTEiJ_T0068062.1 MGP_CASTEiJ_G0027949.1 mouse_genomes_project 4 127748508 127767352 + MGP_CASTEiJ_P0068062 Zbtb8os protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068063.1 MGP_CASTEiJ_G0027949.1 mouse_genomes_project 4 127748804 127760190 + MGP_CASTEiJ_P0068063 Zbtb8os protein_coding unknown_likely_coding MGP_CASTEiJ_T0068064.1 MGP_CASTEiJ_G0027949.1 mouse_genomes_project 4 127748809 127760235 + MGP_CASTEiJ_P0068064 Zbtb8os protein_coding protein_coding MGP_CASTEiJ_T0068065.1 MGP_CASTEiJ_G0027949.1 mouse_genomes_project 4 127748844 127760307 + MGP_CASTEiJ_P0068065 Zbtb8os protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068066.1 MGP_CASTEiJ_G0027949.1 mouse_genomes_project 4 127756710 127760230 + Zbtb8os protein_coding retained_intron MGP_CASTEiJ_T0099827.1 MGP_CASTEiJ_G0036740.1 mouse_genomes_project 4 122367084 122367188 - Gm22983 snRNA snRNA MGP_CASTEiJ_T0014025.1 MGP_CASTEiJ_G0012188.1 mouse_genomes_project 4 30190011 30191577 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102323.1 MGP_CASTEiJ_G0039048.1 mouse_genomes_project 4 113234696 113235500 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0017351.1 MGP_CASTEiJ_G0014893.1 mouse_genomes_project 4 125268221 125273489 + Gm12940 processed_transcript processed_transcript MGP_CASTEiJ_T0017352.1 MGP_CASTEiJ_G0014893.1 mouse_genomes_project 4 125269934 125273489 + Gm12940 processed_transcript processed_transcript MGP_CASTEiJ_T0017353.1 MGP_CASTEiJ_G0014893.1 mouse_genomes_project 4 125272170 125285701 + Gm12940 processed_transcript processed_transcript MGP_CASTEiJ_T0017354.1 MGP_CASTEiJ_G0014893.1 mouse_genomes_project 4 125272269 125273426 + Gm12940 processed_transcript processed_transcript MGP_CASTEiJ_T0007660.1 MGP_CASTEiJ_G0006278.1 mouse_genomes_project 4 53369934 53526298 - Gm12514 lincRNA lincRNA MGP_CASTEiJ_T0007661.1 MGP_CASTEiJ_G0006278.1 mouse_genomes_project 4 53370202 53374289 - Gm12514 lincRNA lincRNA MGP_CASTEiJ_T0004422.1 MGP_CASTEiJ_G0003848.1 mouse_genomes_project 4 133171974 133173375 - 1700021N21Rik antisense antisense MGP_CASTEiJ_T0017312.1 MGP_CASTEiJ_G0014867.1 mouse_genomes_project 4 70890135 70903331 + processed_transcript processed_transcript MGP_CASTEiJ_T0007639.1 MGP_CASTEiJ_G0006261.1 mouse_genomes_project 4 38076909 38120837 - 4933428C19Rik lincRNA lincRNA MGP_CASTEiJ_T0065910.1 MGP_CASTEiJ_G0027484.1 mouse_genomes_project 4 59198741 59233886 + MGP_CASTEiJ_P0065910 Slc31a1 protein_coding protein_coding MGP_CASTEiJ_T0065911.1 MGP_CASTEiJ_G0027484.1 mouse_genomes_project 4 59198773 59233886 + MGP_CASTEiJ_P0065911 Slc31a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065913.1 MGP_CASTEiJ_G0027484.1 mouse_genomes_project 4 59227767 59233886 + MGP_CASTEiJ_P0065913 Slc31a1 protein_coding protein_coding MGP_CASTEiJ_T0066743.1 MGP_CASTEiJ_G0027668.1 mouse_genomes_project 4 105176224 105187049 + Hspb11 protein_coding processed_transcript MGP_CASTEiJ_T0066744.1 MGP_CASTEiJ_G0027668.1 mouse_genomes_project 4 105176229 105202723 + MGP_CASTEiJ_P0066744 Hspb11 protein_coding protein_coding MGP_CASTEiJ_T0066745.1 MGP_CASTEiJ_G0027668.1 mouse_genomes_project 4 105176251 105202713 + MGP_CASTEiJ_P0066745 Hspb11 protein_coding protein_coding MGP_CASTEiJ_T0066746.1 MGP_CASTEiJ_G0027668.1 mouse_genomes_project 4 105184727 105202717 + Hspb11 protein_coding processed_transcript MGP_CASTEiJ_T0065226.1 MGP_CASTEiJ_G0027337.1 mouse_genomes_project 4 40670303 40674334 - MGP_CASTEiJ_P0065226 Stoml2 protein_coding protein_coding MGP_CASTEiJ_T0065227.1 MGP_CASTEiJ_G0027337.1 mouse_genomes_project 4 40670631 40672452 - Stoml2 protein_coding processed_transcript MGP_CASTEiJ_T0065228.1 MGP_CASTEiJ_G0027337.1 mouse_genomes_project 4 40670647 40672529 - Stoml2 protein_coding processed_transcript MGP_CASTEiJ_T0065229.1 MGP_CASTEiJ_G0027337.1 mouse_genomes_project 4 40670834 40674080 - MGP_CASTEiJ_P0065229 Stoml2 protein_coding protein_coding MGP_CASTEiJ_T0065230.1 MGP_CASTEiJ_G0027337.1 mouse_genomes_project 4 40670846 40673209 - MGP_CASTEiJ_P0065230 Stoml2 protein_coding protein_coding MGP_CASTEiJ_T0065231.1 MGP_CASTEiJ_G0027337.1 mouse_genomes_project 4 40672178 40674074 - Stoml2 protein_coding processed_transcript MGP_CASTEiJ_T0065232.1 MGP_CASTEiJ_G0027337.1 mouse_genomes_project 4 40672211 40673994 - MGP_CASTEiJ_P0065232 Stoml2 protein_coding protein_coding MGP_CASTEiJ_T0065233.1 MGP_CASTEiJ_G0027337.1 mouse_genomes_project 4 40672229 40673115 - Stoml2 protein_coding processed_transcript MGP_CASTEiJ_T0065234.1 MGP_CASTEiJ_G0027337.1 mouse_genomes_project 4 40672387 40673216 - Stoml2 protein_coding processed_transcript MGP_CASTEiJ_T0065235.1 MGP_CASTEiJ_G0027337.1 mouse_genomes_project 4 40672655 40673982 - Stoml2 protein_coding processed_transcript MGP_CASTEiJ_T0065236.1 MGP_CASTEiJ_G0027337.1 mouse_genomes_project 4 40673108 40674060 - Stoml2 protein_coding processed_transcript MGP_CASTEiJ_T0004375.1 MGP_CASTEiJ_G0003811.1 mouse_genomes_project 4 107454347 107454763 - Ttc39aos1 antisense antisense MGP_CASTEiJ_T0004376.1 MGP_CASTEiJ_G0003811.1 mouse_genomes_project 4 107454362 107456760 - Ttc39aos1 antisense antisense MGP_CASTEiJ_T0065098.1 MGP_CASTEiJ_G0027311.1 mouse_genomes_project 4 38828463 38914927 - MGP_CASTEiJ_P0065098 Ubap2 protein_coding protein_coding MGP_CASTEiJ_T0065099.1 MGP_CASTEiJ_G0027311.1 mouse_genomes_project 4 38828466 38914918 - MGP_CASTEiJ_P0065099 Ubap2 protein_coding protein_coding MGP_CASTEiJ_T0065100.1 MGP_CASTEiJ_G0027311.1 mouse_genomes_project 4 38829326 38829899 - MGP_CASTEiJ_P0065100 Ubap2 protein_coding protein_coding MGP_CASTEiJ_T0065101.1 MGP_CASTEiJ_G0027311.1 mouse_genomes_project 4 38835182 38836044 - Ubap2 protein_coding processed_transcript MGP_CASTEiJ_T0065102.1 MGP_CASTEiJ_G0027311.1 mouse_genomes_project 4 38842839 38849771 - MGP_CASTEiJ_P0065102 Ubap2 protein_coding protein_coding MGP_CASTEiJ_T0065103.1 MGP_CASTEiJ_G0027311.1 mouse_genomes_project 4 38857485 38890167 - MGP_CASTEiJ_P0065103 Ubap2 protein_coding protein_coding MGP_CASTEiJ_T0065104.1 MGP_CASTEiJ_G0027311.1 mouse_genomes_project 4 38857488 38914899 - Ubap2 protein_coding processed_transcript MGP_CASTEiJ_T0065105.1 MGP_CASTEiJ_G0027311.1 mouse_genomes_project 4 38913850 38914910 - Ubap2 protein_coding processed_transcript MGP_CASTEiJ_T0005474.1 MGP_CASTEiJ_G0004621.1 mouse_genomes_project 4 105745068 105753910 - Lrp8os3 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0007611.1 MGP_CASTEiJ_G0006235.1 mouse_genomes_project 4 7710628 7714939 + Gm11827 lincRNA lincRNA MGP_CASTEiJ_T0007612.1 MGP_CASTEiJ_G0006235.1 mouse_genomes_project 4 7711770 7714939 + Gm11827 lincRNA lincRNA MGP_CASTEiJ_T0069312.1 MGP_CASTEiJ_G0028229.1 mouse_genomes_project 4 147123615 147161711 - MGP_CASTEiJ_P0069312 Clcn6 protein_coding protein_coding MGP_CASTEiJ_T0069313.1 MGP_CASTEiJ_G0028229.1 mouse_genomes_project 4 147125494 147161703 - MGP_CASTEiJ_P0069313 Clcn6 protein_coding protein_coding MGP_CASTEiJ_T0069314.1 MGP_CASTEiJ_G0028229.1 mouse_genomes_project 4 147125949 147161660 - MGP_CASTEiJ_P0069314 Clcn6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069315.1 MGP_CASTEiJ_G0028229.1 mouse_genomes_project 4 147146303 147161653 - Clcn6 protein_coding processed_transcript MGP_CASTEiJ_T0069316.1 MGP_CASTEiJ_G0028229.1 mouse_genomes_project 4 147148254 147161452 - MGP_CASTEiJ_P0069316 Clcn6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068170.1 MGP_CASTEiJ_G0027967.1 mouse_genomes_project 4 128269461 128301630 + Ptp4a2 protein_coding processed_transcript MGP_CASTEiJ_T0068171.1 MGP_CASTEiJ_G0027967.1 mouse_genomes_project 4 128269464 128270763 + Ptp4a2 protein_coding retained_intron MGP_CASTEiJ_T0068172.1 MGP_CASTEiJ_G0027967.1 mouse_genomes_project 4 128279794 128311837 + MGP_CASTEiJ_P0068172 Ptp4a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068173.1 MGP_CASTEiJ_G0027967.1 mouse_genomes_project 4 128279952 128301594 + Ptp4a2 protein_coding processed_transcript MGP_CASTEiJ_T0068174.1 MGP_CASTEiJ_G0027967.1 mouse_genomes_project 4 128279993 128301764 + Ptp4a2 protein_coding processed_transcript MGP_CASTEiJ_T0068175.1 MGP_CASTEiJ_G0027967.1 mouse_genomes_project 4 128301547 128308982 + Ptp4a2 protein_coding processed_transcript MGP_CASTEiJ_T0068176.1 MGP_CASTEiJ_G0027967.1 mouse_genomes_project 4 128301980 128312457 + MGP_CASTEiJ_P0068176 Ptp4a2 protein_coding protein_coding MGP_CASTEiJ_T0004313.1 MGP_CASTEiJ_G0003765.1 mouse_genomes_project 4 39298140 39300179 + Gm12406 antisense antisense MGP_CASTEiJ_T0068816.1 MGP_CASTEiJ_G0028098.1 mouse_genomes_project 4 135480458 135535453 - MGP_CASTEiJ_P0068816 Kdm1a protein_coding protein_coding MGP_CASTEiJ_T0068817.1 MGP_CASTEiJ_G0028098.1 mouse_genomes_project 4 135480462 135535417 - MGP_CASTEiJ_P0068817 Kdm1a protein_coding protein_coding MGP_CASTEiJ_T0068818.1 MGP_CASTEiJ_G0028098.1 mouse_genomes_project 4 135480768 135535038 - MGP_CASTEiJ_P0068818 Kdm1a protein_coding protein_coding MGP_CASTEiJ_T0068819.1 MGP_CASTEiJ_G0028098.1 mouse_genomes_project 4 135480797 135482459 - Kdm1a protein_coding retained_intron MGP_CASTEiJ_T0068820.1 MGP_CASTEiJ_G0028098.1 mouse_genomes_project 4 135481794 135483089 - Kdm1a protein_coding retained_intron MGP_CASTEiJ_T0068821.1 MGP_CASTEiJ_G0028098.1 mouse_genomes_project 4 135483037 135485689 - Kdm1a protein_coding retained_intron MGP_CASTEiJ_T0068822.1 MGP_CASTEiJ_G0028098.1 mouse_genomes_project 4 135485571 135491633 - Kdm1a protein_coding retained_intron MGP_CASTEiJ_T0068823.1 MGP_CASTEiJ_G0028098.1 mouse_genomes_project 4 135485599 135498735 - MGP_CASTEiJ_P0068823 Kdm1a protein_coding protein_coding MGP_CASTEiJ_T0068824.1 MGP_CASTEiJ_G0028098.1 mouse_genomes_project 4 135488675 135508100 - MGP_CASTEiJ_P0068824 Kdm1a protein_coding protein_coding MGP_CASTEiJ_T0017302.1 MGP_CASTEiJ_G0014861.1 mouse_genomes_project 4 44428919 44433046 + Gm16731 processed_transcript processed_transcript MGP_CASTEiJ_T0014030.1 MGP_CASTEiJ_G0012193.1 mouse_genomes_project 4 31730688 31731532 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064873.1 MGP_CASTEiJ_G0027258.1 mouse_genomes_project 4 22433146 22634824 - MGP_CASTEiJ_P0064873 Fut9 protein_coding protein_coding MGP_CASTEiJ_T0064874.1 MGP_CASTEiJ_G0027258.1 mouse_genomes_project 4 22442385 22634922 - MGP_CASTEiJ_P0064874 Fut9 protein_coding protein_coding MGP_CASTEiJ_T0064875.1 MGP_CASTEiJ_G0027258.1 mouse_genomes_project 4 22632371 22634533 - Fut9 protein_coding processed_transcript MGP_CASTEiJ_T0069501.1 MGP_CASTEiJ_G0028261.1 mouse_genomes_project 4 149049598 149080189 - MGP_CASTEiJ_P0069501 Slc25a33 protein_coding protein_coding MGP_CASTEiJ_T0069502.1 MGP_CASTEiJ_G0028261.1 mouse_genomes_project 4 149050242 149079995 - MGP_CASTEiJ_P0069502 Slc25a33 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065670.1 MGP_CASTEiJ_G0027423.1 mouse_genomes_project 4 47579896 47593418 - MGP_CASTEiJ_P0065670 Aldob protein_coding protein_coding MGP_CASTEiJ_T0065671.1 MGP_CASTEiJ_G0027423.1 mouse_genomes_project 4 47580938 47582775 - Aldob protein_coding processed_transcript MGP_CASTEiJ_T0065672.1 MGP_CASTEiJ_G0027423.1 mouse_genomes_project 4 47582445 47583795 - Aldob protein_coding processed_transcript MGP_CASTEiJ_T0070043.1 MGP_CASTEiJ_G0028351.1 mouse_genomes_project 4 155698671 155700302 - Pusl1 protein_coding processed_transcript MGP_CASTEiJ_T0070045.1 MGP_CASTEiJ_G0028351.1 mouse_genomes_project 4 155699650 155702566 - MGP_CASTEiJ_P0070045 Pusl1 protein_coding protein_coding MGP_CASTEiJ_T0070046.1 MGP_CASTEiJ_G0028351.1 mouse_genomes_project 4 155701166 155701994 - Pusl1 protein_coding retained_intron MGP_CASTEiJ_T0070047.1 MGP_CASTEiJ_G0028351.1 mouse_genomes_project 4 155701280 155702511 - Pusl1 protein_coding retained_intron MGP_CASTEiJ_T0070048.1 MGP_CASTEiJ_G0028351.1 mouse_genomes_project 4 155701561 155702540 - Pusl1 protein_coding retained_intron MGP_CASTEiJ_T0070049.1 MGP_CASTEiJ_G0028351.1 mouse_genomes_project 4 155701622 155702554 - Pusl1 protein_coding processed_transcript MGP_CASTEiJ_T0070050.1 MGP_CASTEiJ_G0028351.1 mouse_genomes_project 4 155701836 155702513 - Pusl1 protein_coding retained_intron MGP_CASTEiJ_T0101048.1 MGP_CASTEiJ_G0037961.1 mouse_genomes_project 4 55248019 55248145 + Gm22300 snoRNA snoRNA MGP_CASTEiJ_T0066648.1 MGP_CASTEiJ_G0027651.1 mouse_genomes_project 4 104341533 104351306 - MGP_CASTEiJ_P0066648 Bsnd protein_coding protein_coding MGP_CASTEiJ_T0065657.1 MGP_CASTEiJ_G0027417.1 mouse_genomes_project 4 47078687 47245790 + Plppr1 protein_coding retained_intron MGP_CASTEiJ_T0065658.1 MGP_CASTEiJ_G0027417.1 mouse_genomes_project 4 47078696 47388956 + MGP_CASTEiJ_P0065658 Plppr1 protein_coding protein_coding MGP_CASTEiJ_T0065659.1 MGP_CASTEiJ_G0027417.1 mouse_genomes_project 4 47078916 47347569 + Plppr1 protein_coding retained_intron MGP_CASTEiJ_T0065660.1 MGP_CASTEiJ_G0027417.1 mouse_genomes_project 4 47243639 47388960 + MGP_CASTEiJ_P0065660 Plppr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014110.1 MGP_CASTEiJ_G0012273.1 mouse_genomes_project 4 60501560 60501808 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066670.1 MGP_CASTEiJ_G0027657.1 mouse_genomes_project 4 104552934 104606551 - MGP_CASTEiJ_P0066670 Mroh7 protein_coding protein_coding MGP_CASTEiJ_T0066671.1 MGP_CASTEiJ_G0027657.1 mouse_genomes_project 4 104552941 104585296 - Mroh7 protein_coding processed_transcript MGP_CASTEiJ_T0066672.1 MGP_CASTEiJ_G0027657.1 mouse_genomes_project 4 104552941 104583812 - Mroh7 protein_coding retained_intron MGP_CASTEiJ_T0066673.1 MGP_CASTEiJ_G0027657.1 mouse_genomes_project 4 104553154 104584978 - Mroh7 protein_coding processed_transcript MGP_CASTEiJ_T0066674.1 MGP_CASTEiJ_G0027657.1 mouse_genomes_project 4 104563349 104572945 - Mroh7 protein_coding processed_transcript MGP_CASTEiJ_T0066675.1 MGP_CASTEiJ_G0027657.1 mouse_genomes_project 4 104583753 104606597 - MGP_CASTEiJ_P0066675 Mroh7 protein_coding protein_coding MGP_CASTEiJ_T0066676.1 MGP_CASTEiJ_G0027657.1 mouse_genomes_project 4 104597221 104609541 - MGP_CASTEiJ_P0066676 Mroh7 protein_coding protein_coding MGP_CASTEiJ_T0101603.1 MGP_CASTEiJ_G0038464.1 mouse_genomes_project 4 58353408 58353951 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0099779.1 MGP_CASTEiJ_G0036692.1 mouse_genomes_project 4 36830702 36830866 - Gm25581 snRNA snRNA MGP_CASTEiJ_T0014201.1 MGP_CASTEiJ_G0012364.1 mouse_genomes_project 4 98066875 98067579 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007822.1 MGP_CASTEiJ_G0006401.1 mouse_genomes_project 4 141311780 141313176 + Gm29367 lincRNA lincRNA MGP_CASTEiJ_T0069691.1 MGP_CASTEiJ_G0028294.1 mouse_genomes_project 4 151854561 151866797 - MGP_CASTEiJ_P0069691 Rnf207 protein_coding protein_coding MGP_CASTEiJ_T0069692.1 MGP_CASTEiJ_G0028294.1 mouse_genomes_project 4 151854853 151856549 - Rnf207 protein_coding retained_intron MGP_CASTEiJ_T0069693.1 MGP_CASTEiJ_G0028294.1 mouse_genomes_project 4 151858913 151866647 - MGP_CASTEiJ_P0069693 Rnf207 protein_coding protein_coding MGP_CASTEiJ_T0069694.1 MGP_CASTEiJ_G0028294.1 mouse_genomes_project 4 151859086 151860932 - Rnf207 protein_coding retained_intron MGP_CASTEiJ_T0069695.1 MGP_CASTEiJ_G0028294.1 mouse_genomes_project 4 151859245 151860877 - Rnf207 protein_coding retained_intron MGP_CASTEiJ_T0069696.1 MGP_CASTEiJ_G0028294.1 mouse_genomes_project 4 151860362 151860929 - Rnf207 protein_coding retained_intron MGP_CASTEiJ_T0069697.1 MGP_CASTEiJ_G0028294.1 mouse_genomes_project 4 151860921 151866670 - MGP_CASTEiJ_P0069697 Rnf207 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069698.1 MGP_CASTEiJ_G0028294.1 mouse_genomes_project 4 151860931 151864154 - Rnf207 protein_coding retained_intron MGP_CASTEiJ_T0069699.1 MGP_CASTEiJ_G0028294.1 mouse_genomes_project 4 151862708 151867190 - Rnf207 protein_coding retained_intron MGP_CASTEiJ_T0069700.1 MGP_CASTEiJ_G0028294.1 mouse_genomes_project 4 151862710 151866808 - Rnf207 protein_coding retained_intron MGP_CASTEiJ_T0069701.1 MGP_CASTEiJ_G0028294.1 mouse_genomes_project 4 151863045 151866814 - Rnf207 protein_coding retained_intron MGP_CASTEiJ_T0069702.1 MGP_CASTEiJ_G0028294.1 mouse_genomes_project 4 151863649 151864517 - Rnf207 protein_coding retained_intron MGP_CASTEiJ_T0101055.1 MGP_CASTEiJ_G0037968.1 mouse_genomes_project 4 70686945 70687078 - Gm24170 snoRNA snoRNA MGP_CASTEiJ_T0014317.1 MGP_CASTEiJ_G0012480.1 mouse_genomes_project 4 138315509 138316118 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010295.1 MGP_CASTEiJ_G0008483.1 mouse_genomes_project 4 43336716 43336784 - Gm22518 miRNA miRNA MGP_CASTEiJ_T0014170.1 MGP_CASTEiJ_G0012333.1 mouse_genomes_project 4 87910018 87911722 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067862.1 MGP_CASTEiJ_G0027908.1 mouse_genomes_project 4 124512082 124515620 - MGP_CASTEiJ_P0067862 Tekt2 protein_coding protein_coding MGP_CASTEiJ_T0067863.1 MGP_CASTEiJ_G0027908.1 mouse_genomes_project 4 124512084 124515132 - MGP_CASTEiJ_P0067863 Tekt2 protein_coding protein_coding MGP_CASTEiJ_T0067864.1 MGP_CASTEiJ_G0027908.1 mouse_genomes_project 4 124513640 124515562 - Tekt2 protein_coding retained_intron MGP_CASTEiJ_T0067865.1 MGP_CASTEiJ_G0027908.1 mouse_genomes_project 4 124514272 124515575 - MGP_CASTEiJ_P0067865 Tekt2 protein_coding protein_coding MGP_CASTEiJ_T0067866.1 MGP_CASTEiJ_G0027908.1 mouse_genomes_project 4 124514816 124515367 - MGP_CASTEiJ_P0067866 Tekt2 protein_coding protein_coding MGP_CASTEiJ_T0069035.1 MGP_CASTEiJ_G0028148.1 mouse_genomes_project 4 138782774 138831168 + MGP_CASTEiJ_P0069035 Iffo2 protein_coding protein_coding MGP_CASTEiJ_T0069036.1 MGP_CASTEiJ_G0028148.1 mouse_genomes_project 4 138783002 138831172 + MGP_CASTEiJ_P0069036 Iffo2 protein_coding protein_coding MGP_CASTEiJ_T0014164.1 MGP_CASTEiJ_G0012327.1 mouse_genomes_project 4 84224939 84225711 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099800.1 MGP_CASTEiJ_G0036713.1 mouse_genomes_project 4 83909261 83909334 + Gm26017 snRNA snRNA MGP_CASTEiJ_T0066340.1 MGP_CASTEiJ_G0027587.1 mouse_genomes_project 4 92365879 92489186 + MGP_CASTEiJ_P0066340 Tek protein_coding protein_coding MGP_CASTEiJ_T0066341.1 MGP_CASTEiJ_G0027587.1 mouse_genomes_project 4 92365890 92489149 + MGP_CASTEiJ_P0066341 Tek protein_coding protein_coding MGP_CASTEiJ_T0066342.1 MGP_CASTEiJ_G0027587.1 mouse_genomes_project 4 92366108 92488892 + MGP_CASTEiJ_P0066342 Tek protein_coding protein_coding MGP_CASTEiJ_T0066343.1 MGP_CASTEiJ_G0027587.1 mouse_genomes_project 4 92428233 92437311 + Tek protein_coding processed_transcript MGP_CASTEiJ_T0007760.1 MGP_CASTEiJ_G0006356.1 mouse_genomes_project 4 125753329 125755392 + 4930471C06Rik lincRNA lincRNA MGP_CASTEiJ_T0007761.1 MGP_CASTEiJ_G0006356.1 mouse_genomes_project 4 125753415 125755392 + 4930471C06Rik lincRNA lincRNA MGP_CASTEiJ_T0069645.1 MGP_CASTEiJ_G0028287.1 mouse_genomes_project 4 151643329 151647532 + MGP_CASTEiJ_P0069645 Tnfrsf25 protein_coding protein_coding MGP_CASTEiJ_T0069646.1 MGP_CASTEiJ_G0028287.1 mouse_genomes_project 4 151643469 151647530 + MGP_CASTEiJ_P0069646 Tnfrsf25 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069647.1 MGP_CASTEiJ_G0028287.1 mouse_genomes_project 4 151643737 151647524 + MGP_CASTEiJ_P0069647 Tnfrsf25 protein_coding protein_coding MGP_CASTEiJ_T0069648.1 MGP_CASTEiJ_G0028287.1 mouse_genomes_project 4 151643793 151644382 + Tnfrsf25 protein_coding processed_transcript MGP_CASTEiJ_T0069649.1 MGP_CASTEiJ_G0028287.1 mouse_genomes_project 4 151645366 151646736 + Tnfrsf25 protein_coding processed_transcript MGP_CASTEiJ_T0007698.1 MGP_CASTEiJ_G0006311.1 mouse_genomes_project 4 89220352 89225525 + Gm12670 lincRNA lincRNA MGP_CASTEiJ_T0067468.1 MGP_CASTEiJ_G0027814.1 mouse_genomes_project 4 116736502 116740006 - MGP_CASTEiJ_P0067468 Olfr1329 protein_coding protein_coding MGP_CASTEiJ_T0066337.1 MGP_CASTEiJ_G0027586.1 mouse_genomes_project 4 92262202 92277287 - MGP_CASTEiJ_P0066337 Lrrc19 protein_coding protein_coding MGP_CASTEiJ_T0066338.1 MGP_CASTEiJ_G0027586.1 mouse_genomes_project 4 92262202 92277315 - MGP_CASTEiJ_P0066338 Lrrc19 protein_coding protein_coding MGP_CASTEiJ_T0014158.1 MGP_CASTEiJ_G0012321.1 mouse_genomes_project 4 80911370 80911832 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068938.1 MGP_CASTEiJ_G0028121.1 mouse_genomes_project 4 137325627 137367585 + MGP_CASTEiJ_P0068938 Kif17 protein_coding protein_coding MGP_CASTEiJ_T0068939.1 MGP_CASTEiJ_G0028121.1 mouse_genomes_project 4 137325867 137367475 + MGP_CASTEiJ_P0068939 Kif17 protein_coding protein_coding MGP_CASTEiJ_T0068940.1 MGP_CASTEiJ_G0028121.1 mouse_genomes_project 4 137325894 137353488 + Kif17 protein_coding retained_intron MGP_CASTEiJ_T0068941.1 MGP_CASTEiJ_G0028121.1 mouse_genomes_project 4 137325965 137368060 + MGP_CASTEiJ_P0068941 Kif17 protein_coding protein_coding MGP_CASTEiJ_T0099790.1 MGP_CASTEiJ_G0036703.1 mouse_genomes_project 4 47513968 47514072 + Gm26424 snRNA snRNA MGP_CASTEiJ_T0067880.1 MGP_CASTEiJ_G0027911.1 mouse_genomes_project 4 124691917 124742910 - MGP_CASTEiJ_P0067880 Ago4 protein_coding protein_coding MGP_CASTEiJ_T0067881.1 MGP_CASTEiJ_G0027911.1 mouse_genomes_project 4 124721158 124722569 - Ago4 protein_coding processed_transcript MGP_CASTEiJ_T0014219.1 MGP_CASTEiJ_G0012382.1 mouse_genomes_project 4 105192695 105193173 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014284.1 MGP_CASTEiJ_G0012447.1 mouse_genomes_project 4 124731992 124732335 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101043.1 MGP_CASTEiJ_G0037956.1 mouse_genomes_project 4 52214560 52214691 + Gm24177 snoRNA snoRNA MGP_CASTEiJ_T0065410.1 MGP_CASTEiJ_G0027367.1 mouse_genomes_project 4 41682327 41706583 + MGP_CASTEiJ_P0065410 Glipr2 protein_coding protein_coding MGP_CASTEiJ_T0065411.1 MGP_CASTEiJ_G0027367.1 mouse_genomes_project 4 41682618 41706583 + MGP_CASTEiJ_P0065411 Glipr2 protein_coding protein_coding MGP_CASTEiJ_T0004296.1 MGP_CASTEiJ_G0003752.1 mouse_genomes_project 4 8227849 8232252 - Gm11832 antisense antisense MGP_CASTEiJ_T0067116.1 MGP_CASTEiJ_G0027742.1 mouse_genomes_project 4 113473975 113482543 + MGP_CASTEiJ_P0067116 6430628N08Rik protein_coding protein_coding MGP_CASTEiJ_T0064762.1 MGP_CASTEiJ_G0027230.1 mouse_genomes_project 4 12858641 12899419 - MGP_CASTEiJ_P0064762 Ripk2 protein_coding protein_coding MGP_CASTEiJ_T0064763.1 MGP_CASTEiJ_G0027230.1 mouse_genomes_project 4 12858649 12899415 - MGP_CASTEiJ_P0064763 Ripk2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064764.1 MGP_CASTEiJ_G0027230.1 mouse_genomes_project 4 12866892 12899195 - MGP_CASTEiJ_P0064764 Ripk2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068043.1 MGP_CASTEiJ_G0027945.1 mouse_genomes_project 4 127583688 127615649 + MGP_CASTEiJ_P0068043 Yars protein_coding protein_coding MGP_CASTEiJ_T0068044.1 MGP_CASTEiJ_G0027945.1 mouse_genomes_project 4 127583833 127591414 + Yars protein_coding retained_intron MGP_CASTEiJ_T0068045.1 MGP_CASTEiJ_G0027945.1 mouse_genomes_project 4 127583914 127615286 + MGP_CASTEiJ_P0068045 Yars protein_coding unknown_likely_coding MGP_CASTEiJ_T0068046.1 MGP_CASTEiJ_G0027945.1 mouse_genomes_project 4 127591087 127605604 + MGP_CASTEiJ_P0068046 Yars protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068047.1 MGP_CASTEiJ_G0027945.1 mouse_genomes_project 4 127591206 127603653 + Yars protein_coding processed_transcript MGP_CASTEiJ_T0068048.1 MGP_CASTEiJ_G0027945.1 mouse_genomes_project 4 127604578 127605863 + Yars protein_coding retained_intron MGP_CASTEiJ_T0068049.1 MGP_CASTEiJ_G0027945.1 mouse_genomes_project 4 127607249 127611847 + Yars protein_coding retained_intron MGP_CASTEiJ_T0068050.1 MGP_CASTEiJ_G0027945.1 mouse_genomes_project 4 127607701 127614705 + Yars protein_coding processed_transcript MGP_CASTEiJ_T0068051.1 MGP_CASTEiJ_G0027945.1 mouse_genomes_project 4 127609887 127611055 + Yars protein_coding retained_intron MGP_CASTEiJ_T0068678.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134121706 134156477 - MGP_CASTEiJ_P0068678 Srrm1 protein_coding protein_coding MGP_CASTEiJ_T0068679.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134121713 134156400 - MGP_CASTEiJ_P0068679 Srrm1 protein_coding protein_coding MGP_CASTEiJ_T0068680.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134122317 134156400 - MGP_CASTEiJ_P0068680 Srrm1 protein_coding protein_coding MGP_CASTEiJ_T0068681.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134122507 134156414 - MGP_CASTEiJ_P0068681 Srrm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068682.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134122507 134156414 - MGP_CASTEiJ_P0068682 Srrm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068683.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134123257 134156292 - MGP_CASTEiJ_P0068683 Srrm1 protein_coding protein_coding MGP_CASTEiJ_T0068684.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134123497 134128447 - MGP_CASTEiJ_P0068684 Srrm1 protein_coding protein_coding MGP_CASTEiJ_T0068685.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134123683 134156290 - Srrm1 protein_coding retained_intron MGP_CASTEiJ_T0068686.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134124992 134126059 - Srrm1 protein_coding retained_intron MGP_CASTEiJ_T0068687.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134130395 134133463 - Srrm1 protein_coding retained_intron MGP_CASTEiJ_T0068688.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134132702 134141527 - Srrm1 protein_coding retained_intron MGP_CASTEiJ_T0068689.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134133387 134145894 - MGP_CASTEiJ_P0068689 Srrm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068690.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134141722 134145950 - Srrm1 protein_coding retained_intron MGP_CASTEiJ_T0068691.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134145842 134156298 - MGP_CASTEiJ_P0068691 Srrm1 protein_coding protein_coding MGP_CASTEiJ_T0068692.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134147066 134156307 - Srrm1 protein_coding retained_intron MGP_CASTEiJ_T0068693.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134147951 134150629 - MGP_CASTEiJ_P0068693 Srrm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068694.1 MGP_CASTEiJ_G0028070.1 mouse_genomes_project 4 134149115 134156358 - Srrm1 protein_coding processed_transcript MGP_CASTEiJ_T0004389.1 MGP_CASTEiJ_G0003822.1 mouse_genomes_project 4 116409757 116412919 - Gm12853 antisense antisense MGP_CASTEiJ_T0066532.1 MGP_CASTEiJ_G0027628.1 mouse_genomes_project 4 99367302 99380964 + MGP_CASTEiJ_P0066532 Leprot protein_coding unknown_likely_coding MGP_CASTEiJ_T0066533.1 MGP_CASTEiJ_G0027628.1 mouse_genomes_project 4 99367347 99381348 + MGP_CASTEiJ_P0066533 Leprot protein_coding protein_coding MGP_CASTEiJ_T0014067.1 MGP_CASTEiJ_G0012230.1 mouse_genomes_project 4 46677648 46678011 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065582.1 MGP_CASTEiJ_G0027398.1 mouse_genomes_project 4 44380811 44397514 + MGP_CASTEiJ_P0065582 Nans protein_coding protein_coding MGP_CASTEiJ_T0065583.1 MGP_CASTEiJ_G0027398.1 mouse_genomes_project 4 44380882 44386723 + Nans protein_coding processed_transcript MGP_CASTEiJ_T0065584.1 MGP_CASTEiJ_G0027398.1 mouse_genomes_project 4 44380937 44390663 + Nans protein_coding processed_transcript MGP_CASTEiJ_T0065585.1 MGP_CASTEiJ_G0027398.1 mouse_genomes_project 4 44381544 44392321 + Nans protein_coding processed_transcript MGP_CASTEiJ_T0064550.1 MGP_CASTEiJ_G0027184.1 mouse_genomes_project 4 1344769 1382353 - MGP_CASTEiJ_P0064550 Impad1 protein_coding protein_coding MGP_CASTEiJ_T0064551.1 MGP_CASTEiJ_G0027184.1 mouse_genomes_project 4 1348728 1381955 - MGP_CASTEiJ_P0064551 Impad1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014061.1 MGP_CASTEiJ_G0012224.1 mouse_genomes_project 4 43634521 43634852 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007671.1 MGP_CASTEiJ_G0006286.1 mouse_genomes_project 4 56596196 56624987 + Gm26889 lincRNA lincRNA MGP_CASTEiJ_T0007634.1 MGP_CASTEiJ_G0006256.1 mouse_genomes_project 4 31454079 31458026 + Gm12753 lincRNA lincRNA MGP_CASTEiJ_T0065815.1 MGP_CASTEiJ_G0027459.1 mouse_genomes_project 4 56312520 56320903 - MGP_CASTEiJ_P0065815 D630039A03Rik protein_coding protein_coding MGP_CASTEiJ_T0007646.1 MGP_CASTEiJ_G0006268.1 mouse_genomes_project 4 43529626 43577548 + Gm829 lincRNA lincRNA MGP_CASTEiJ_T0007647.1 MGP_CASTEiJ_G0006268.1 mouse_genomes_project 4 43529626 43540412 + Gm829 lincRNA lincRNA MGP_CASTEiJ_T0064757.1 MGP_CASTEiJ_G0027229.1 mouse_genomes_project 4 12731290 12748025 - MGP_CASTEiJ_P0064757 Osgin2 protein_coding protein_coding MGP_CASTEiJ_T0064758.1 MGP_CASTEiJ_G0027229.1 mouse_genomes_project 4 12731396 12736211 - Osgin2 protein_coding processed_transcript MGP_CASTEiJ_T0064759.1 MGP_CASTEiJ_G0027229.1 mouse_genomes_project 4 12736053 12747933 - MGP_CASTEiJ_P0064759 Osgin2 protein_coding protein_coding MGP_CASTEiJ_T0064760.1 MGP_CASTEiJ_G0027229.1 mouse_genomes_project 4 12736628 12747958 - Osgin2 protein_coding processed_transcript MGP_CASTEiJ_T0064761.1 MGP_CASTEiJ_G0027229.1 mouse_genomes_project 4 12738985 12740496 - Osgin2 protein_coding processed_transcript MGP_CASTEiJ_T0010314.1 MGP_CASTEiJ_G0008502.1 mouse_genomes_project 4 115275026 115275100 + Gm25559 miRNA miRNA MGP_CASTEiJ_T0069252.1 MGP_CASTEiJ_G0028204.1 mouse_genomes_project 4 143902289 143905531 + MGP_CASTEiJ_P0069252 protein_coding protein_coding MGP_CASTEiJ_T0068442.1 MGP_CASTEiJ_G0028019.1 mouse_genomes_project 4 131865778 131875786 - MGP_CASTEiJ_P0068442 Sytl1 protein_coding protein_coding MGP_CASTEiJ_T0068443.1 MGP_CASTEiJ_G0028019.1 mouse_genomes_project 4 131865778 131875760 - MGP_CASTEiJ_P0068443 Sytl1 protein_coding protein_coding MGP_CASTEiJ_T0068444.1 MGP_CASTEiJ_G0028019.1 mouse_genomes_project 4 131865786 131875760 - Sytl1 protein_coding processed_transcript MGP_CASTEiJ_T0068445.1 MGP_CASTEiJ_G0028019.1 mouse_genomes_project 4 131865848 131875725 - Sytl1 protein_coding processed_transcript MGP_CASTEiJ_T0066655.1 MGP_CASTEiJ_G0027654.1 mouse_genomes_project 4 104492195 104509971 + MGP_CASTEiJ_P0066655 Ttc22 protein_coding protein_coding MGP_CASTEiJ_T0066656.1 MGP_CASTEiJ_G0027654.1 mouse_genomes_project 4 104505757 104507407 + Ttc22 protein_coding processed_transcript MGP_CASTEiJ_T0013993.1 MGP_CASTEiJ_G0012156.1 mouse_genomes_project 4 21285746 21287462 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004366.1 MGP_CASTEiJ_G0003805.1 mouse_genomes_project 4 104925625 104930187 - Gm12786 antisense antisense MGP_CASTEiJ_T0067219.1 MGP_CASTEiJ_G0027762.1 mouse_genomes_project 4 114347591 114353246 - MGP_CASTEiJ_P0067219 Mmachc protein_coding protein_coding MGP_CASTEiJ_T0067220.1 MGP_CASTEiJ_G0027762.1 mouse_genomes_project 4 114349599 114353128 - Mmachc protein_coding processed_transcript MGP_CASTEiJ_T0007811.1 MGP_CASTEiJ_G0006391.1 mouse_genomes_project 4 139172581 139175469 + lincRNA lincRNA MGP_CASTEiJ_T0014181.1 MGP_CASTEiJ_G0012344.1 mouse_genomes_project 4 91231513 91231823 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065734.1 MGP_CASTEiJ_G0027441.1 mouse_genomes_project 4 51990312 51999863 + MGP_CASTEiJ_P0065734 Tal2 protein_coding protein_coding MGP_CASTEiJ_T0070073.1 MGP_CASTEiJ_G0028354.1 mouse_genomes_project 4 155754164 155758444 + MGP_CASTEiJ_P0070073 Fam132a protein_coding protein_coding MGP_CASTEiJ_T0070074.1 MGP_CASTEiJ_G0028354.1 mouse_genomes_project 4 155756387 155757009 + Fam132a protein_coding processed_transcript MGP_CASTEiJ_T0070075.1 MGP_CASTEiJ_G0028354.1 mouse_genomes_project 4 155756923 155758436 + Fam132a protein_coding processed_transcript MGP_CASTEiJ_T0010350.1 MGP_CASTEiJ_G0008538.1 mouse_genomes_project 4 142669494 142669557 - Mir7021 miRNA miRNA MGP_CASTEiJ_T0014129.1 MGP_CASTEiJ_G0012292.1 mouse_genomes_project 4 71146560 71147356 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011250.1 MGP_CASTEiJ_G0009438.1 mouse_genomes_project 4 114579664 114579931 + Gm25435 misc_RNA misc_RNA MGP_CASTEiJ_T0000001.1 MGP_CASTEiJ_G0000001.1 mouse_genomes_project 4 115559950 115594327 - Gm17114 3prime_overlapping_ncRNA 3prime_overlapping_ncRNA MGP_CASTEiJ_T0067759.1 MGP_CASTEiJ_G0027887.1 mouse_genomes_project 4 122956522 122965047 + MGP_CASTEiJ_P0067759 protein_coding protein_coding MGP_CASTEiJ_T0067760.1 MGP_CASTEiJ_G0027887.1 mouse_genomes_project 4 122958229 122996912 + MGP_CASTEiJ_P0067760 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067761.1 MGP_CASTEiJ_G0027887.1 mouse_genomes_project 4 122963986 122999729 + MGP_CASTEiJ_P0067761 protein_coding protein_coding MGP_CASTEiJ_T0067762.1 MGP_CASTEiJ_G0027887.1 mouse_genomes_project 4 122977991 122981397 + protein_coding processed_transcript MGP_CASTEiJ_T0066877.1 MGP_CASTEiJ_G0027689.1 mouse_genomes_project 4 106595707 106610505 + Orc1 protein_coding processed_transcript MGP_CASTEiJ_T0066878.1 MGP_CASTEiJ_G0027689.1 mouse_genomes_project 4 106595718 106610646 + Orc1 protein_coding processed_transcript MGP_CASTEiJ_T0066879.1 MGP_CASTEiJ_G0027689.1 mouse_genomes_project 4 106595738 106632425 + MGP_CASTEiJ_P0066879 Orc1 protein_coding protein_coding MGP_CASTEiJ_T0066880.1 MGP_CASTEiJ_G0027689.1 mouse_genomes_project 4 106603100 106603853 + Orc1 protein_coding processed_transcript MGP_CASTEiJ_T0066881.1 MGP_CASTEiJ_G0027689.1 mouse_genomes_project 4 106621906 106623858 + Orc1 protein_coding processed_transcript MGP_CASTEiJ_T0066640.1 MGP_CASTEiJ_G0027649.1 mouse_genomes_project 4 104174796 104296448 + MGP_CASTEiJ_P0066640 Usp24 protein_coding protein_coding MGP_CASTEiJ_T0066641.1 MGP_CASTEiJ_G0027649.1 mouse_genomes_project 4 104174803 104218643 + Usp24 protein_coding retained_intron MGP_CASTEiJ_T0066642.1 MGP_CASTEiJ_G0027649.1 mouse_genomes_project 4 104174817 104296453 + MGP_CASTEiJ_P0066642 Usp24 protein_coding protein_coding MGP_CASTEiJ_T0066643.1 MGP_CASTEiJ_G0027649.1 mouse_genomes_project 4 104175027 104266428 + MGP_CASTEiJ_P0066643 Usp24 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066644.1 MGP_CASTEiJ_G0027649.1 mouse_genomes_project 4 104283701 104286061 + Usp24 protein_coding processed_transcript MGP_CASTEiJ_T0064605.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6028726 6060836 - Asph protein_coding processed_transcript MGP_CASTEiJ_T0064606.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6029736 6248023 - MGP_CASTEiJ_P0064606 Asph protein_coding protein_coding MGP_CASTEiJ_T0064607.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6029736 6248023 - MGP_CASTEiJ_P0064607 Asph protein_coding protein_coding MGP_CASTEiJ_T0064608.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6029736 6248205 - MGP_CASTEiJ_P0064608 Asph protein_coding protein_coding MGP_CASTEiJ_T0064609.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6158966 6172529 - Asph protein_coding processed_transcript MGP_CASTEiJ_T0064610.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6159341 6248023 - MGP_CASTEiJ_P0064610 Asph protein_coding protein_coding MGP_CASTEiJ_T0064611.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6159341 6222034 - MGP_CASTEiJ_P0064611 Asph protein_coding protein_coding MGP_CASTEiJ_T0064612.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6159341 6248023 - MGP_CASTEiJ_P0064612 Asph protein_coding protein_coding MGP_CASTEiJ_T0064613.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6159341 6222034 - MGP_CASTEiJ_P0064613 Asph protein_coding protein_coding MGP_CASTEiJ_T0064614.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6159341 6222034 - MGP_CASTEiJ_P0064614 Asph protein_coding protein_coding MGP_CASTEiJ_T0064615.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6182817 6217554 - Asph protein_coding processed_transcript MGP_CASTEiJ_T0064616.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6186121 6222034 - MGP_CASTEiJ_P0064616 Asph protein_coding protein_coding MGP_CASTEiJ_T0064617.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6189227 6248023 - MGP_CASTEiJ_P0064617 Asph protein_coding protein_coding MGP_CASTEiJ_T0064618.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6199220 6222034 - MGP_CASTEiJ_P0064618 Asph protein_coding protein_coding MGP_CASTEiJ_T0064619.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6200049 6248023 - MGP_CASTEiJ_P0064619 Asph protein_coding protein_coding MGP_CASTEiJ_T0064620.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6207413 6248023 - MGP_CASTEiJ_P0064620 Asph protein_coding protein_coding MGP_CASTEiJ_T0064621.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6208943 6248023 - MGP_CASTEiJ_P0064621 Asph protein_coding protein_coding MGP_CASTEiJ_T0064622.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6209323 6248182 - MGP_CASTEiJ_P0064622 Asph protein_coding protein_coding MGP_CASTEiJ_T0064623.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6211494 6222034 - Asph protein_coding processed_transcript MGP_CASTEiJ_T0064624.1 MGP_CASTEiJ_G0027196.1 mouse_genomes_project 4 6247139 6247931 - Asph protein_coding processed_transcript MGP_CASTEiJ_T0010338.1 MGP_CASTEiJ_G0008526.1 mouse_genomes_project 4 134331125 134331254 - Gm25317 miRNA miRNA MGP_CASTEiJ_T0101070.1 MGP_CASTEiJ_G0037983.1 mouse_genomes_project 4 103956507 103956620 - Gm26047 snoRNA snoRNA MGP_CASTEiJ_T0064782.1 MGP_CASTEiJ_G0027238.1 mouse_genomes_project 4 16646711 16671335 + MGP_CASTEiJ_P0064782 Slc7a13 protein_coding protein_coding MGP_CASTEiJ_T0069128.1 MGP_CASTEiJ_G0028171.1 mouse_genomes_project 4 140617947 140624888 + MGP_CASTEiJ_P0069128 Arhgef19 protein_coding protein_coding MGP_CASTEiJ_T0069129.1 MGP_CASTEiJ_G0028171.1 mouse_genomes_project 4 140618098 140626004 + Arhgef19 protein_coding retained_intron MGP_CASTEiJ_T0069130.1 MGP_CASTEiJ_G0028171.1 mouse_genomes_project 4 140621312 140624832 + MGP_CASTEiJ_P0069130 Arhgef19 protein_coding protein_coding MGP_CASTEiJ_T0069131.1 MGP_CASTEiJ_G0028171.1 mouse_genomes_project 4 140621326 140636796 + MGP_CASTEiJ_P0069131 Arhgef19 protein_coding protein_coding MGP_CASTEiJ_T0069132.1 MGP_CASTEiJ_G0028171.1 mouse_genomes_project 4 140621350 140625515 + MGP_CASTEiJ_P0069132 Arhgef19 protein_coding protein_coding MGP_CASTEiJ_T0069133.1 MGP_CASTEiJ_G0028171.1 mouse_genomes_project 4 140623892 140625958 + MGP_CASTEiJ_P0069133 Arhgef19 protein_coding protein_coding MGP_CASTEiJ_T0069134.1 MGP_CASTEiJ_G0028171.1 mouse_genomes_project 4 140624871 140626623 + MGP_CASTEiJ_P0069134 Arhgef19 protein_coding protein_coding MGP_CASTEiJ_T0069135.1 MGP_CASTEiJ_G0028171.1 mouse_genomes_project 4 140625439 140626490 + Arhgef19 protein_coding retained_intron MGP_CASTEiJ_T0101016.1 MGP_CASTEiJ_G0037929.1 mouse_genomes_project 4 1318090 1318222 + Gm26436 snoRNA snoRNA MGP_CASTEiJ_T0068768.1 MGP_CASTEiJ_G0028088.1 mouse_genomes_project 4 134898423 134898961 - protein_coding processed_transcript MGP_CASTEiJ_T0068769.1 MGP_CASTEiJ_G0028088.1 mouse_genomes_project 4 134898423 134927623 - protein_coding processed_transcript MGP_CASTEiJ_T0068770.1 MGP_CASTEiJ_G0028088.1 mouse_genomes_project 4 134924636 134928332 - MGP_CASTEiJ_P0068770 protein_coding protein_coding MGP_CASTEiJ_T0068771.1 MGP_CASTEiJ_G0028088.1 mouse_genomes_project 4 134924852 134925428 - protein_coding processed_transcript MGP_CASTEiJ_T0068772.1 MGP_CASTEiJ_G0028088.1 mouse_genomes_project 4 134924895 134927935 - protein_coding processed_transcript MGP_CASTEiJ_T0068773.1 MGP_CASTEiJ_G0028088.1 mouse_genomes_project 4 134925185 134928029 - MGP_CASTEiJ_P0068773 protein_coding protein_coding MGP_CASTEiJ_T0068774.1 MGP_CASTEiJ_G0028088.1 mouse_genomes_project 4 134925237 134927692 - protein_coding processed_transcript MGP_CASTEiJ_T0068775.1 MGP_CASTEiJ_G0028088.1 mouse_genomes_project 4 134925534 134927644 - protein_coding processed_transcript MGP_CASTEiJ_T0068776.1 MGP_CASTEiJ_G0028088.1 mouse_genomes_project 4 134925929 134927654 - protein_coding processed_transcript MGP_CASTEiJ_T0068777.1 MGP_CASTEiJ_G0028088.1 mouse_genomes_project 4 134926142 134928367 - protein_coding processed_transcript MGP_CASTEiJ_T0099773.1 MGP_CASTEiJ_G0036686.1 mouse_genomes_project 4 14319813 14319916 - Gm23384 snRNA snRNA MGP_CASTEiJ_T0101601.1 MGP_CASTEiJ_G0038463.1 mouse_genomes_project 4 41857967 41860145 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101602.1 MGP_CASTEiJ_G0038463.1 mouse_genomes_project 4 41859304 41859610 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0066854.1 MGP_CASTEiJ_G0027684.1 mouse_genomes_project 4 106328060 106341128 + MGP_CASTEiJ_P0066854 Coa7 protein_coding protein_coding MGP_CASTEiJ_T0066855.1 MGP_CASTEiJ_G0027684.1 mouse_genomes_project 4 106328073 106338045 + Coa7 protein_coding processed_transcript MGP_CASTEiJ_T0066856.1 MGP_CASTEiJ_G0027684.1 mouse_genomes_project 4 106328076 106338277 + Coa7 protein_coding processed_transcript MGP_CASTEiJ_T0066857.1 MGP_CASTEiJ_G0027684.1 mouse_genomes_project 4 106328098 106337772 + Coa7 protein_coding processed_transcript MGP_CASTEiJ_T0066858.1 MGP_CASTEiJ_G0027684.1 mouse_genomes_project 4 106328109 106332551 + Coa7 protein_coding processed_transcript MGP_CASTEiJ_T0067395.1 MGP_CASTEiJ_G0027792.1 mouse_genomes_project 4 115658784 115884813 - MGP_CASTEiJ_P0067395 St3gal3 protein_coding protein_coding MGP_CASTEiJ_T0067396.1 MGP_CASTEiJ_G0027792.1 mouse_genomes_project 4 115658788 115884837 - MGP_CASTEiJ_P0067396 St3gal3 protein_coding protein_coding MGP_CASTEiJ_T0067397.1 MGP_CASTEiJ_G0027792.1 mouse_genomes_project 4 115658790 115884805 - MGP_CASTEiJ_P0067397 St3gal3 protein_coding protein_coding MGP_CASTEiJ_T0067398.1 MGP_CASTEiJ_G0027792.1 mouse_genomes_project 4 115667818 115772316 - MGP_CASTEiJ_P0067398 St3gal3 protein_coding protein_coding MGP_CASTEiJ_T0067399.1 MGP_CASTEiJ_G0027792.1 mouse_genomes_project 4 115667910 115698428 - MGP_CASTEiJ_P0067399 St3gal3 protein_coding protein_coding MGP_CASTEiJ_T0007688.1 MGP_CASTEiJ_G0006303.1 mouse_genomes_project 4 81199446 81203574 - Gm11415 lincRNA lincRNA MGP_CASTEiJ_T0066295.1 MGP_CASTEiJ_G0027572.1 mouse_genomes_project 4 86356879 86357377 - MGP_CASTEiJ_P0066295 4930553M12Rik protein_coding protein_coding MGP_CASTEiJ_T0066636.1 MGP_CASTEiJ_G0027647.1 mouse_genomes_project 4 102967641 103046301 + MGP_CASTEiJ_P0066636 Plpp3 protein_coding protein_coding MGP_CASTEiJ_T0066637.1 MGP_CASTEiJ_G0027647.1 mouse_genomes_project 4 102968087 103145007 + MGP_CASTEiJ_P0066637 Plpp3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014042.1 MGP_CASTEiJ_G0012205.1 mouse_genomes_project 4 35532397 35532826 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101604.1 MGP_CASTEiJ_G0038465.1 mouse_genomes_project 4 84245757 84260309 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0014341.1 MGP_CASTEiJ_G0012504.1 mouse_genomes_project 4 155268012 155268403 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065861.1 MGP_CASTEiJ_G0027471.1 mouse_genomes_project 4 57486972 57495808 + MGP_CASTEiJ_P0065861 Gng10 protein_coding protein_coding MGP_CASTEiJ_T0065862.1 MGP_CASTEiJ_G0027471.1 mouse_genomes_project 4 57487656 57495808 + Gng10 protein_coding processed_transcript MGP_CASTEiJ_T0013960.1 MGP_CASTEiJ_G0012123.1 mouse_genomes_project 4 10268321 10269057 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065403.1 MGP_CASTEiJ_G0027363.1 mouse_genomes_project 4 41475659 41476744 - MGP_CASTEiJ_P0065403 Olfr159 protein_coding protein_coding MGP_CASTEiJ_T0099780.1 MGP_CASTEiJ_G0036693.1 mouse_genomes_project 4 37444419 37444501 + Gm22850 snRNA snRNA MGP_CASTEiJ_T0007665.1 MGP_CASTEiJ_G0006282.1 mouse_genomes_project 4 54265160 54295032 - Gm12519 lincRNA lincRNA MGP_CASTEiJ_T0066176.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81607589 82012694 - MGP_CASTEiJ_P0066176 Bnc2 protein_coding protein_coding MGP_CASTEiJ_T0066177.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81607723 82012727 - MGP_CASTEiJ_P0066177 Bnc2 protein_coding protein_coding MGP_CASTEiJ_T0066178.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81607846 82012935 - MGP_CASTEiJ_P0066178 Bnc2 protein_coding protein_coding MGP_CASTEiJ_T0066179.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81607874 81624197 - MGP_CASTEiJ_P0066179 Bnc2 protein_coding protein_coding MGP_CASTEiJ_T0066180.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81608094 82012746 - MGP_CASTEiJ_P0066180 Bnc2 protein_coding protein_coding MGP_CASTEiJ_T0066181.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81608643 81624370 - MGP_CASTEiJ_P0066181 Bnc2 protein_coding protein_coding MGP_CASTEiJ_T0066182.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81608729 81624586 - MGP_CASTEiJ_P0066182 Bnc2 protein_coding protein_coding MGP_CASTEiJ_T0066183.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81608928 81624308 - MGP_CASTEiJ_P0066183 Bnc2 protein_coding protein_coding MGP_CASTEiJ_T0066184.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81608928 81624308 - MGP_CASTEiJ_P0066184 Bnc2 protein_coding protein_coding MGP_CASTEiJ_T0066185.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81625653 82012656 - MGP_CASTEiJ_P0066185 Bnc2 protein_coding protein_coding MGP_CASTEiJ_T0066186.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81625653 82012656 - MGP_CASTEiJ_P0066186 Bnc2 protein_coding protein_coding MGP_CASTEiJ_T0066187.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81625677 81844168 - Bnc2 protein_coding processed_transcript MGP_CASTEiJ_T0066188.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81626016 82012687 - MGP_CASTEiJ_P0066188 Bnc2 protein_coding protein_coding MGP_CASTEiJ_T0066189.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81626043 82012657 - MGP_CASTEiJ_P0066189 Bnc2 protein_coding protein_coding MGP_CASTEiJ_T0066190.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81626074 81869506 - Bnc2 protein_coding processed_transcript MGP_CASTEiJ_T0066191.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81722153 82012659 - Bnc2 protein_coding retained_intron MGP_CASTEiJ_T0066192.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81724392 82012657 - MGP_CASTEiJ_P0066192 Bnc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066193.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81724424 81882915 - Bnc2 protein_coding processed_transcript MGP_CASTEiJ_T0066194.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81724517 82012738 - MGP_CASTEiJ_P0066194 Bnc2 protein_coding protein_coding MGP_CASTEiJ_T0066195.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81744683 81882586 - MGP_CASTEiJ_P0066195 Bnc2 protein_coding protein_coding MGP_CASTEiJ_T0066196.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81744708 81860027 - Bnc2 protein_coding processed_transcript MGP_CASTEiJ_T0066197.1 MGP_CASTEiJ_G0027543.1 mouse_genomes_project 4 81882507 82012659 - MGP_CASTEiJ_P0066197 Bnc2 protein_coding protein_coding MGP_CASTEiJ_T0069357.1 MGP_CASTEiJ_G0028239.1 mouse_genomes_project 4 147621405 147627838 + Mtor protein_coding retained_intron MGP_CASTEiJ_T0069358.1 MGP_CASTEiJ_G0028239.1 mouse_genomes_project 4 147621405 147736927 + MGP_CASTEiJ_P0069358 Mtor protein_coding protein_coding MGP_CASTEiJ_T0069359.1 MGP_CASTEiJ_G0028239.1 mouse_genomes_project 4 147621419 147627842 + MGP_CASTEiJ_P0069359 Mtor protein_coding protein_coding MGP_CASTEiJ_T0069360.1 MGP_CASTEiJ_G0028239.1 mouse_genomes_project 4 147621474 147665871 + MGP_CASTEiJ_P0069360 Mtor protein_coding unknown_likely_coding MGP_CASTEiJ_T0069362.1 MGP_CASTEiJ_G0028239.1 mouse_genomes_project 4 147722744 147726046 + Mtor protein_coding retained_intron MGP_CASTEiJ_T0066502.1 MGP_CASTEiJ_G0027622.1 mouse_genomes_project 4 98479613 98726966 + MGP_CASTEiJ_P0066502 Cachd1 protein_coding protein_coding MGP_CASTEiJ_T0066503.1 MGP_CASTEiJ_G0027622.1 mouse_genomes_project 4 98479613 98710460 + MGP_CASTEiJ_P0066503 Cachd1 protein_coding protein_coding MGP_CASTEiJ_T0066504.1 MGP_CASTEiJ_G0027622.1 mouse_genomes_project 4 98700594 98708952 + Cachd1 protein_coding processed_transcript MGP_CASTEiJ_T0066505.1 MGP_CASTEiJ_G0027622.1 mouse_genomes_project 4 98700693 98709122 + Cachd1 protein_coding processed_transcript MGP_CASTEiJ_T0098598.1 MGP_CASTEiJ_G0035529.1 mouse_genomes_project 4 46782437 46782549 - Gm24573 rRNA rRNA MGP_CASTEiJ_T0068942.1 MGP_CASTEiJ_G0028122.1 mouse_genomes_project 4 137372803 137382359 + MGP_CASTEiJ_P0068942 Ddost protein_coding protein_coding MGP_CASTEiJ_T0066541.1 MGP_CASTEiJ_G0027630.1 mouse_genomes_project 4 99620492 99621473 - MGP_CASTEiJ_P0066541 C130073F10Rik protein_coding protein_coding MGP_CASTEiJ_T0099826.1 MGP_CASTEiJ_G0036739.1 mouse_genomes_project 4 119052437 119052601 - Gm23540 snRNA snRNA MGP_CASTEiJ_T0067075.1 MGP_CASTEiJ_G0027732.1 mouse_genomes_project 4 113079917 113095855 + MGP_CASTEiJ_P0067075 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0066393.1 MGP_CASTEiJ_G0027594.1 mouse_genomes_project 4 93720232 93765352 - MGP_CASTEiJ_P0066393 Cyp2j12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066394.1 MGP_CASTEiJ_G0027594.1 mouse_genomes_project 4 93720487 93765338 - MGP_CASTEiJ_P0066394 Cyp2j12 protein_coding protein_coding MGP_CASTEiJ_T0064700.1 MGP_CASTEiJ_G0027213.1 mouse_genomes_project 4 8694908 8747065 - MGP_CASTEiJ_P0064700 protein_coding protein_coding MGP_CASTEiJ_T0064701.1 MGP_CASTEiJ_G0027213.1 mouse_genomes_project 4 8694916 8747046 - MGP_CASTEiJ_P0064701 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0064702.1 MGP_CASTEiJ_G0027213.1 mouse_genomes_project 4 8695198 8749343 - MGP_CASTEiJ_P0064702 protein_coding protein_coding MGP_CASTEiJ_T0064703.1 MGP_CASTEiJ_G0027213.1 mouse_genomes_project 4 8695331 8747158 - MGP_CASTEiJ_P0064703 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064704.1 MGP_CASTEiJ_G0027213.1 mouse_genomes_project 4 8715111 8747115 - protein_coding retained_intron MGP_CASTEiJ_T0064705.1 MGP_CASTEiJ_G0027213.1 mouse_genomes_project 4 8728234 8747035 - protein_coding retained_intron MGP_CASTEiJ_T0064706.1 MGP_CASTEiJ_G0027213.1 mouse_genomes_project 4 8737609 8747040 - protein_coding retained_intron MGP_CASTEiJ_T0099852.1 MGP_CASTEiJ_G0036765.1 mouse_genomes_project 4 149676294 149676404 + Gm23209 snRNA snRNA MGP_CASTEiJ_T0068328.1 MGP_CASTEiJ_G0027997.1 mouse_genomes_project 4 130819060 130838189 - MGP_CASTEiJ_P0068328 Trnau1ap protein_coding protein_coding MGP_CASTEiJ_T0068329.1 MGP_CASTEiJ_G0027997.1 mouse_genomes_project 4 130819060 130838238 - MGP_CASTEiJ_P0068329 Trnau1ap protein_coding protein_coding MGP_CASTEiJ_T0068330.1 MGP_CASTEiJ_G0027997.1 mouse_genomes_project 4 130819062 130838216 - Trnau1ap protein_coding retained_intron MGP_CASTEiJ_T0068331.1 MGP_CASTEiJ_G0027997.1 mouse_genomes_project 4 130819146 130838194 - Trnau1ap protein_coding processed_transcript MGP_CASTEiJ_T0068332.1 MGP_CASTEiJ_G0027997.1 mouse_genomes_project 4 130819162 130838089 - MGP_CASTEiJ_P0068332 Trnau1ap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068333.1 MGP_CASTEiJ_G0027997.1 mouse_genomes_project 4 130821479 130838114 - MGP_CASTEiJ_P0068333 Trnau1ap protein_coding protein_coding MGP_CASTEiJ_T0068334.1 MGP_CASTEiJ_G0027997.1 mouse_genomes_project 4 130821585 130838204 - MGP_CASTEiJ_P0068334 Trnau1ap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068335.1 MGP_CASTEiJ_G0027997.1 mouse_genomes_project 4 130821622 130838182 - Trnau1ap protein_coding processed_transcript MGP_CASTEiJ_T0068336.1 MGP_CASTEiJ_G0027997.1 mouse_genomes_project 4 130821625 130838238 - MGP_CASTEiJ_P0068336 Trnau1ap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068337.1 MGP_CASTEiJ_G0027997.1 mouse_genomes_project 4 130828261 130833969 - Trnau1ap protein_coding retained_intron MGP_CASTEiJ_T0068338.1 MGP_CASTEiJ_G0027997.1 mouse_genomes_project 4 130828739 130838238 - MGP_CASTEiJ_P0068338 Trnau1ap protein_coding protein_coding MGP_CASTEiJ_T0068339.1 MGP_CASTEiJ_G0027997.1 mouse_genomes_project 4 130836803 130838215 - Trnau1ap protein_coding retained_intron MGP_CASTEiJ_T0068165.1 MGP_CASTEiJ_G0027966.1 mouse_genomes_project 4 128154565 128193051 - MGP_CASTEiJ_P0068165 Khdrbs1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068166.1 MGP_CASTEiJ_G0027966.1 mouse_genomes_project 4 128155129 128192654 - MGP_CASTEiJ_P0068166 Khdrbs1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068167.1 MGP_CASTEiJ_G0027966.1 mouse_genomes_project 4 128155227 128164425 - Khdrbs1 protein_coding retained_intron MGP_CASTEiJ_T0068168.1 MGP_CASTEiJ_G0027966.1 mouse_genomes_project 4 128164423 128193050 - MGP_CASTEiJ_P0068168 Khdrbs1 protein_coding protein_coding MGP_CASTEiJ_T0068169.1 MGP_CASTEiJ_G0027966.1 mouse_genomes_project 4 128178706 128193057 - Khdrbs1 protein_coding retained_intron MGP_CASTEiJ_T0066320.1 MGP_CASTEiJ_G0027580.1 mouse_genomes_project 4 89720941 89723832 - MGP_CASTEiJ_P0066320 Izumo3 protein_coding protein_coding MGP_CASTEiJ_T0066321.1 MGP_CASTEiJ_G0027580.1 mouse_genomes_project 4 89720950 89723845 - MGP_CASTEiJ_P0066321 Izumo3 protein_coding protein_coding MGP_CASTEiJ_T0014075.1 MGP_CASTEiJ_G0012238.1 mouse_genomes_project 4 48129701 48130196 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066326.1 MGP_CASTEiJ_G0027583.1 mouse_genomes_project 4 92175174 92175706 + MGP_CASTEiJ_P0066326 Gm10306 protein_coding protein_coding MGP_CASTEiJ_T0067952.1 MGP_CASTEiJ_G0027927.1 mouse_genomes_project 4 125620792 125623786 - MGP_CASTEiJ_P0067952 Gjb4 protein_coding protein_coding MGP_CASTEiJ_T0099795.1 MGP_CASTEiJ_G0036708.1 mouse_genomes_project 4 65168592 65168763 + Gm23738 snRNA snRNA MGP_CASTEiJ_T0014274.1 MGP_CASTEiJ_G0012437.1 mouse_genomes_project 4 121209134 121209707 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069439.1 MGP_CASTEiJ_G0028252.1 mouse_genomes_project 4 148420644 148563451 - MGP_CASTEiJ_P0069439 Kif1b protein_coding protein_coding MGP_CASTEiJ_T0069440.1 MGP_CASTEiJ_G0028252.1 mouse_genomes_project 4 148422338 148431266 - Kif1b protein_coding retained_intron MGP_CASTEiJ_T0069441.1 MGP_CASTEiJ_G0028252.1 mouse_genomes_project 4 148423183 148447679 - MGP_CASTEiJ_P0069441 Kif1b protein_coding protein_coding MGP_CASTEiJ_T0069442.1 MGP_CASTEiJ_G0028252.1 mouse_genomes_project 4 148424557 148563265 - MGP_CASTEiJ_P0069442 Kif1b protein_coding protein_coding MGP_CASTEiJ_T0069443.1 MGP_CASTEiJ_G0028252.1 mouse_genomes_project 4 148425027 148563263 - MGP_CASTEiJ_P0069443 Kif1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0069444.1 MGP_CASTEiJ_G0028252.1 mouse_genomes_project 4 148425027 148563263 - MGP_CASTEiJ_P0069444 Kif1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0069445.1 MGP_CASTEiJ_G0028252.1 mouse_genomes_project 4 148456349 148460066 - Kif1b protein_coding retained_intron MGP_CASTEiJ_T0069446.1 MGP_CASTEiJ_G0028252.1 mouse_genomes_project 4 148456748 148463744 - Kif1b protein_coding retained_intron MGP_CASTEiJ_T0069447.1 MGP_CASTEiJ_G0028252.1 mouse_genomes_project 4 148464987 148473604 - Kif1b protein_coding retained_intron MGP_CASTEiJ_T0069448.1 MGP_CASTEiJ_G0028252.1 mouse_genomes_project 4 148483381 148563382 - MGP_CASTEiJ_P0069448 Kif1b protein_coding protein_coding MGP_CASTEiJ_T0069449.1 MGP_CASTEiJ_G0028252.1 mouse_genomes_project 4 148495061 148497686 - Kif1b protein_coding retained_intron MGP_CASTEiJ_T0069450.1 MGP_CASTEiJ_G0028252.1 mouse_genomes_project 4 148515876 148563452 - Kif1b protein_coding retained_intron MGP_CASTEiJ_T0069451.1 MGP_CASTEiJ_G0028252.1 mouse_genomes_project 4 148544927 148563423 - Kif1b protein_coding retained_intron MGP_CASTEiJ_T0007749.1 MGP_CASTEiJ_G0006352.1 mouse_genomes_project 4 122450318 122454585 - 1700057H15Rik lincRNA lincRNA MGP_CASTEiJ_T0007750.1 MGP_CASTEiJ_G0006352.1 mouse_genomes_project 4 122450318 122489216 - 1700057H15Rik lincRNA lincRNA MGP_CASTEiJ_T0007751.1 MGP_CASTEiJ_G0006352.1 mouse_genomes_project 4 122487823 122531972 - 1700057H15Rik lincRNA lincRNA MGP_CASTEiJ_T0007752.1 MGP_CASTEiJ_G0006352.1 mouse_genomes_project 4 122488155 122489206 - 1700057H15Rik lincRNA lincRNA MGP_CASTEiJ_T0064969.1 MGP_CASTEiJ_G0027280.1 mouse_genomes_project 4 31904278 31951154 - MGP_CASTEiJ_P0064969 Orc3 protein_coding protein_coding MGP_CASTEiJ_T0064970.1 MGP_CASTEiJ_G0027280.1 mouse_genomes_project 4 31904278 31951123 - MGP_CASTEiJ_P0064970 Orc3 protein_coding protein_coding MGP_CASTEiJ_T0064971.1 MGP_CASTEiJ_G0027280.1 mouse_genomes_project 4 31905047 31933519 - Orc3 protein_coding processed_transcript MGP_CASTEiJ_T0064972.1 MGP_CASTEiJ_G0027280.1 mouse_genomes_project 4 31905880 31910412 - Orc3 protein_coding processed_transcript MGP_CASTEiJ_T0064973.1 MGP_CASTEiJ_G0027280.1 mouse_genomes_project 4 31911158 31951121 - Orc3 protein_coding processed_transcript MGP_CASTEiJ_T0064974.1 MGP_CASTEiJ_G0027280.1 mouse_genomes_project 4 31927300 31929956 - Orc3 protein_coding processed_transcript MGP_CASTEiJ_T0064975.1 MGP_CASTEiJ_G0027280.1 mouse_genomes_project 4 31927826 31951103 - MGP_CASTEiJ_P0064975 Orc3 protein_coding protein_coding MGP_CASTEiJ_T0064976.1 MGP_CASTEiJ_G0027280.1 mouse_genomes_project 4 31933469 31951113 - Orc3 protein_coding processed_transcript MGP_CASTEiJ_T0064977.1 MGP_CASTEiJ_G0027280.1 mouse_genomes_project 4 31933557 31951119 - Orc3 protein_coding processed_transcript MGP_CASTEiJ_T0064978.1 MGP_CASTEiJ_G0027280.1 mouse_genomes_project 4 31934143 31951114 - Orc3 protein_coding processed_transcript MGP_CASTEiJ_T0004339.1 MGP_CASTEiJ_G0003788.1 mouse_genomes_project 4 79781152 79825297 + Gm11266 antisense antisense MGP_CASTEiJ_T0007738.1 MGP_CASTEiJ_G0006342.1 mouse_genomes_project 4 113791524 113793003 + Gm12951 lincRNA lincRNA MGP_CASTEiJ_T0067469.1 MGP_CASTEiJ_G0027815.1 mouse_genomes_project 4 116792990 116800234 + MGP_CASTEiJ_P0067469 Lao1 protein_coding protein_coding MGP_CASTEiJ_T0067470.1 MGP_CASTEiJ_G0027815.1 mouse_genomes_project 4 116796763 116799407 + Lao1 protein_coding processed_transcript MGP_CASTEiJ_T0069471.1 MGP_CASTEiJ_G0028256.1 mouse_genomes_project 4 148750131 148753162 + MGP_CASTEiJ_P0069471 protein_coding protein_coding MGP_CASTEiJ_T0069472.1 MGP_CASTEiJ_G0028256.1 mouse_genomes_project 4 148750133 148753190 + MGP_CASTEiJ_P0069472 protein_coding protein_coding MGP_CASTEiJ_T0069473.1 MGP_CASTEiJ_G0028256.1 mouse_genomes_project 4 148750142 148750642 + protein_coding processed_transcript MGP_CASTEiJ_T0069474.1 MGP_CASTEiJ_G0028256.1 mouse_genomes_project 4 148750153 148765212 + MGP_CASTEiJ_P0069474 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069475.1 MGP_CASTEiJ_G0028256.1 mouse_genomes_project 4 148750234 148750903 + protein_coding processed_transcript MGP_CASTEiJ_T0068481.1 MGP_CASTEiJ_G0028029.1 mouse_genomes_project 4 132233175 132240449 + MGP_CASTEiJ_P0068481 Gpn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068482.1 MGP_CASTEiJ_G0028029.1 mouse_genomes_project 4 132233175 132240449 + MGP_CASTEiJ_P0068482 Gpn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068483.1 MGP_CASTEiJ_G0028029.1 mouse_genomes_project 4 132233207 132234917 + Gpn2 protein_coding processed_transcript MGP_CASTEiJ_T0101041.1 MGP_CASTEiJ_G0037954.1 mouse_genomes_project 4 49792981 49793090 + Gm23043 snoRNA snoRNA MGP_CASTEiJ_T0067202.1 MGP_CASTEiJ_G0027759.1 mouse_genomes_project 4 114238825 114268264 - MGP_CASTEiJ_P0067202 Nasp protein_coding protein_coding MGP_CASTEiJ_T0067203.1 MGP_CASTEiJ_G0027759.1 mouse_genomes_project 4 114239374 114268259 - MGP_CASTEiJ_P0067203 Nasp protein_coding unknown_likely_coding MGP_CASTEiJ_T0067204.1 MGP_CASTEiJ_G0027759.1 mouse_genomes_project 4 114239382 114268708 - MGP_CASTEiJ_P0067204 Nasp protein_coding protein_coding MGP_CASTEiJ_T0067205.1 MGP_CASTEiJ_G0027759.1 mouse_genomes_project 4 114239382 114268245 - MGP_CASTEiJ_P0067205 Nasp protein_coding protein_coding MGP_CASTEiJ_T0067206.1 MGP_CASTEiJ_G0027759.1 mouse_genomes_project 4 114240510 114243807 - Nasp protein_coding processed_transcript MGP_CASTEiJ_T0067207.1 MGP_CASTEiJ_G0027759.1 mouse_genomes_project 4 114240576 114242511 - Nasp protein_coding processed_transcript MGP_CASTEiJ_T0067208.1 MGP_CASTEiJ_G0027759.1 mouse_genomes_project 4 114249036 114268260 - Nasp protein_coding processed_transcript MGP_CASTEiJ_T0067209.1 MGP_CASTEiJ_G0027759.1 mouse_genomes_project 4 114256508 114264732 - Nasp protein_coding processed_transcript MGP_CASTEiJ_T0067210.1 MGP_CASTEiJ_G0027759.1 mouse_genomes_project 4 114258110 114268215 - Nasp protein_coding processed_transcript MGP_CASTEiJ_T0066996.1 MGP_CASTEiJ_G0027711.1 mouse_genomes_project 4 109486773 109531970 + MGP_CASTEiJ_P0066996 Bend5 protein_coding protein_coding MGP_CASTEiJ_T0066997.1 MGP_CASTEiJ_G0027711.1 mouse_genomes_project 4 109486814 109505184 + Bend5 protein_coding processed_transcript MGP_CASTEiJ_T0066998.1 MGP_CASTEiJ_G0027711.1 mouse_genomes_project 4 109486855 109531592 + Bend5 protein_coding processed_transcript MGP_CASTEiJ_T0066999.1 MGP_CASTEiJ_G0027711.1 mouse_genomes_project 4 109486974 109492322 + Bend5 protein_coding processed_transcript MGP_CASTEiJ_T0067000.1 MGP_CASTEiJ_G0027711.1 mouse_genomes_project 4 109505134 109531968 + MGP_CASTEiJ_P0067000 Bend5 protein_coding protein_coding MGP_CASTEiJ_T0067001.1 MGP_CASTEiJ_G0027711.1 mouse_genomes_project 4 109505256 109531599 + Bend5 protein_coding processed_transcript MGP_CASTEiJ_T0067028.1 MGP_CASTEiJ_G0027715.1 mouse_genomes_project 4 110011023 110026905 + MGP_CASTEiJ_P0067028 protein_coding protein_coding MGP_CASTEiJ_T0067029.1 MGP_CASTEiJ_G0027715.1 mouse_genomes_project 4 110015945 110063849 + protein_coding retained_intron MGP_CASTEiJ_T0066042.1 MGP_CASTEiJ_G0027519.1 mouse_genomes_project 4 67267945 67456015 - MGP_CASTEiJ_P0066042 Cdk5rap2 protein_coding protein_coding MGP_CASTEiJ_T0066043.1 MGP_CASTEiJ_G0027519.1 mouse_genomes_project 4 67274132 67455990 - MGP_CASTEiJ_P0066043 Cdk5rap2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066044.1 MGP_CASTEiJ_G0027519.1 mouse_genomes_project 4 67292850 67318961 - MGP_CASTEiJ_P0066044 Cdk5rap2 protein_coding protein_coding MGP_CASTEiJ_T0066045.1 MGP_CASTEiJ_G0027519.1 mouse_genomes_project 4 67296897 67298276 - Cdk5rap2 protein_coding processed_transcript MGP_CASTEiJ_T0066046.1 MGP_CASTEiJ_G0027519.1 mouse_genomes_project 4 67444083 67448691 - Cdk5rap2 protein_coding processed_transcript MGP_CASTEiJ_T0069215.1 MGP_CASTEiJ_G0028192.1 mouse_genomes_project 4 141331969 141461450 - MGP_CASTEiJ_P0069215 Fhad1 protein_coding protein_coding MGP_CASTEiJ_T0069216.1 MGP_CASTEiJ_G0028192.1 mouse_genomes_project 4 141332388 141457987 - MGP_CASTEiJ_P0069216 Fhad1 protein_coding protein_coding MGP_CASTEiJ_T0069217.1 MGP_CASTEiJ_G0028192.1 mouse_genomes_project 4 141332388 141461448 - MGP_CASTEiJ_P0069217 Fhad1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069218.1 MGP_CASTEiJ_G0028192.1 mouse_genomes_project 4 141359993 141366151 - Fhad1 protein_coding processed_transcript MGP_CASTEiJ_T0069219.1 MGP_CASTEiJ_G0028192.1 mouse_genomes_project 4 141359993 141376869 - MGP_CASTEiJ_P0069219 Fhad1 protein_coding protein_coding MGP_CASTEiJ_T0069220.1 MGP_CASTEiJ_G0028192.1 mouse_genomes_project 4 141372145 141393816 - Fhad1 protein_coding processed_transcript MGP_CASTEiJ_T0069221.1 MGP_CASTEiJ_G0028192.1 mouse_genomes_project 4 141376561 141395924 - Fhad1 protein_coding processed_transcript MGP_CASTEiJ_T0069222.1 MGP_CASTEiJ_G0028192.1 mouse_genomes_project 4 141406469 141461465 - Fhad1 protein_coding retained_intron MGP_CASTEiJ_T0069223.1 MGP_CASTEiJ_G0028192.1 mouse_genomes_project 4 141460160 141461422 - Fhad1 protein_coding processed_transcript MGP_CASTEiJ_T0014050.1 MGP_CASTEiJ_G0012213.1 mouse_genomes_project 4 37689592 37690010 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017343.1 MGP_CASTEiJ_G0014891.1 mouse_genomes_project 4 123017292 123018834 + 9930104L06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017344.1 MGP_CASTEiJ_G0014891.1 mouse_genomes_project 4 123017302 123019641 + 9930104L06Rik processed_transcript retained_intron MGP_CASTEiJ_T0017345.1 MGP_CASTEiJ_G0014891.1 mouse_genomes_project 4 123017306 123022544 + 9930104L06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017346.1 MGP_CASTEiJ_G0014891.1 mouse_genomes_project 4 123017309 123024620 + 9930104L06Rik processed_transcript retained_intron MGP_CASTEiJ_T0017347.1 MGP_CASTEiJ_G0014891.1 mouse_genomes_project 4 123017318 123024621 + 9930104L06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017348.1 MGP_CASTEiJ_G0014891.1 mouse_genomes_project 4 123018973 123022693 + 9930104L06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017349.1 MGP_CASTEiJ_G0014891.1 mouse_genomes_project 4 123023093 123023828 + 9930104L06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0007739.1 MGP_CASTEiJ_G0006343.1 mouse_genomes_project 4 115198264 115202426 + Gm12827 lincRNA lincRNA MGP_CASTEiJ_T0066232.1 MGP_CASTEiJ_G0027551.1 mouse_genomes_project 4 84159089 84261469 + MGP_CASTEiJ_P0066232 Dennd4c protein_coding protein_coding MGP_CASTEiJ_T0066233.1 MGP_CASTEiJ_G0027551.1 mouse_genomes_project 4 84159089 84237487 + MGP_CASTEiJ_P0066233 Dennd4c protein_coding protein_coding MGP_CASTEiJ_T0066234.1 MGP_CASTEiJ_G0027551.1 mouse_genomes_project 4 84178487 84259926 + MGP_CASTEiJ_P0066234 Dennd4c protein_coding protein_coding MGP_CASTEiJ_T0066235.1 MGP_CASTEiJ_G0027551.1 mouse_genomes_project 4 84183267 84186977 + Dennd4c protein_coding processed_transcript MGP_CASTEiJ_T0066039.1 MGP_CASTEiJ_G0027518.1 mouse_genomes_project 4 65793181 66007227 - MGP_CASTEiJ_P0066039 Brinp1 protein_coding protein_coding MGP_CASTEiJ_T0066040.1 MGP_CASTEiJ_G0027518.1 mouse_genomes_project 4 65829180 65881718 - Brinp1 protein_coding processed_transcript MGP_CASTEiJ_T0066041.1 MGP_CASTEiJ_G0027518.1 mouse_genomes_project 4 65865881 65868593 - Brinp1 protein_coding processed_transcript MGP_CASTEiJ_T0068783.1 MGP_CASTEiJ_G0028091.1 mouse_genomes_project 4 135097272 135137966 + MGP_CASTEiJ_P0068783 Asap3 protein_coding protein_coding MGP_CASTEiJ_T0007704.1 MGP_CASTEiJ_G0006317.1 mouse_genomes_project 4 92804762 92825419 + Gm12708 lincRNA lincRNA MGP_CASTEiJ_T0007705.1 MGP_CASTEiJ_G0006317.1 mouse_genomes_project 4 92804811 92821939 + Gm12708 lincRNA lincRNA MGP_CASTEiJ_T0068424.1 MGP_CASTEiJ_G0028015.1 mouse_genomes_project 4 131725140 131810485 + MGP_CASTEiJ_P0068424 Wasf2 protein_coding protein_coding MGP_CASTEiJ_T0068425.1 MGP_CASTEiJ_G0028015.1 mouse_genomes_project 4 131725175 131791850 + MGP_CASTEiJ_P0068425 Wasf2 protein_coding protein_coding MGP_CASTEiJ_T0068426.1 MGP_CASTEiJ_G0028015.1 mouse_genomes_project 4 131725264 131783329 + Wasf2 protein_coding processed_transcript MGP_CASTEiJ_T0068427.1 MGP_CASTEiJ_G0028015.1 mouse_genomes_project 4 131782769 131783381 + Wasf2 protein_coding processed_transcript MGP_CASTEiJ_T0068428.1 MGP_CASTEiJ_G0028015.1 mouse_genomes_project 4 131783139 131807253 + MGP_CASTEiJ_P0068428 Wasf2 protein_coding protein_coding MGP_CASTEiJ_T0068429.1 MGP_CASTEiJ_G0028015.1 mouse_genomes_project 4 131795830 131797359 + Wasf2 protein_coding processed_transcript MGP_CASTEiJ_T0001362.1 MGP_CASTEiJ_G0001292.1 mouse_genomes_project 4 97074428 97084049 - TEC TEC MGP_CASTEiJ_T0004403.1 MGP_CASTEiJ_G0003833.1 mouse_genomes_project 4 122969450 122973371 - 1700125G02Rik antisense antisense MGP_CASTEiJ_T0069247.1 MGP_CASTEiJ_G0028200.1 mouse_genomes_project 4 143009416 143021932 - MGP_CASTEiJ_P0069247 Oog4 protein_coding protein_coding MGP_CASTEiJ_T0069248.1 MGP_CASTEiJ_G0028200.1 mouse_genomes_project 4 143009417 143021910 - MGP_CASTEiJ_P0069248 Oog4 protein_coding protein_coding MGP_CASTEiJ_T0065596.1 MGP_CASTEiJ_G0027401.1 mouse_genomes_project 4 44495440 44541773 - MGP_CASTEiJ_P0065596 Tbc1d2 protein_coding protein_coding MGP_CASTEiJ_T0065597.1 MGP_CASTEiJ_G0027401.1 mouse_genomes_project 4 44523640 44541773 - MGP_CASTEiJ_P0065597 Tbc1d2 protein_coding protein_coding MGP_CASTEiJ_T0099793.1 MGP_CASTEiJ_G0036706.1 mouse_genomes_project 4 60501809 60501916 - Gm24448 snRNA snRNA MGP_CASTEiJ_T0065687.1 MGP_CASTEiJ_G0027426.1 mouse_genomes_project 4 47712095 47903272 - MGP_CASTEiJ_P0065687 Grin3a protein_coding protein_coding MGP_CASTEiJ_T0065688.1 MGP_CASTEiJ_G0027426.1 mouse_genomes_project 4 47712095 47903272 - MGP_CASTEiJ_P0065688 Grin3a protein_coding protein_coding MGP_CASTEiJ_T0065690.1 MGP_CASTEiJ_G0027426.1 mouse_genomes_project 4 47760496 47779390 - Grin3a protein_coding processed_transcript MGP_CASTEiJ_T0065691.1 MGP_CASTEiJ_G0027426.1 mouse_genomes_project 4 47824794 47903467 - Grin3a protein_coding processed_transcript MGP_CASTEiJ_T0069258.1 MGP_CASTEiJ_G0028209.1 mouse_genomes_project 4 144050983 144051292 - MGP_CASTEiJ_P0069258 Gm9944 protein_coding protein_coding MGP_CASTEiJ_T0010346.1 MGP_CASTEiJ_G0008534.1 mouse_genomes_project 4 139225344 139225439 - Mir2139 miRNA miRNA MGP_CASTEiJ_T0067047.1 MGP_CASTEiJ_G0027723.1 mouse_genomes_project 4 112588407 112591006 - MGP_CASTEiJ_P0067047 Foxd2 protein_coding protein_coding MGP_CASTEiJ_T0066389.1 MGP_CASTEiJ_G0027593.1 mouse_genomes_project 4 93655076 93686499 - MGP_CASTEiJ_P0066389 Cyp2j13 protein_coding protein_coding MGP_CASTEiJ_T0066390.1 MGP_CASTEiJ_G0027593.1 mouse_genomes_project 4 93671548 93703165 - MGP_CASTEiJ_P0066390 Cyp2j13 protein_coding protein_coding MGP_CASTEiJ_T0066391.1 MGP_CASTEiJ_G0027593.1 mouse_genomes_project 4 93674129 93703171 - MGP_CASTEiJ_P0066391 Cyp2j13 protein_coding protein_coding MGP_CASTEiJ_T0066392.1 MGP_CASTEiJ_G0027593.1 mouse_genomes_project 4 93674129 93703149 - MGP_CASTEiJ_P0066392 Cyp2j13 protein_coding protein_coding MGP_CASTEiJ_T0014101.1 MGP_CASTEiJ_G0012264.1 mouse_genomes_project 4 56909778 56910352 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069948.1 MGP_CASTEiJ_G0028333.1 mouse_genomes_project 4 155408378 155439060 + MGP_CASTEiJ_P0069948 Cdk11b protein_coding unknown_likely_coding MGP_CASTEiJ_T0069949.1 MGP_CASTEiJ_G0028333.1 mouse_genomes_project 4 155408389 155414804 + Cdk11b protein_coding processed_transcript MGP_CASTEiJ_T0069950.1 MGP_CASTEiJ_G0028333.1 mouse_genomes_project 4 155408404 155439065 + MGP_CASTEiJ_P0069950 Cdk11b protein_coding protein_coding MGP_CASTEiJ_T0069951.1 MGP_CASTEiJ_G0028333.1 mouse_genomes_project 4 155408415 155409232 + Cdk11b protein_coding processed_transcript MGP_CASTEiJ_T0069952.1 MGP_CASTEiJ_G0028333.1 mouse_genomes_project 4 155408418 155439065 + MGP_CASTEiJ_P0069952 Cdk11b protein_coding protein_coding MGP_CASTEiJ_T0069953.1 MGP_CASTEiJ_G0028333.1 mouse_genomes_project 4 155420017 155426707 + Cdk11b protein_coding processed_transcript MGP_CASTEiJ_T0069954.1 MGP_CASTEiJ_G0028333.1 mouse_genomes_project 4 155436330 155437535 + Cdk11b protein_coding processed_transcript MGP_CASTEiJ_T0069955.1 MGP_CASTEiJ_G0028333.1 mouse_genomes_project 4 155436495 155437422 + Cdk11b protein_coding processed_transcript MGP_CASTEiJ_T0067347.1 MGP_CASTEiJ_G0027783.1 mouse_genomes_project 4 115425956 115428417 + MGP_CASTEiJ_P0067347 Gm12845 protein_coding protein_coding MGP_CASTEiJ_T0004384.1 MGP_CASTEiJ_G0003818.1 mouse_genomes_project 4 114983754 114985645 + Gm12843 antisense antisense MGP_CASTEiJ_T0004385.1 MGP_CASTEiJ_G0003818.1 mouse_genomes_project 4 114984081 114985293 + Gm12843 antisense antisense MGP_CASTEiJ_T0004478.1 MGP_CASTEiJ_G0003892.1 mouse_genomes_project 4 154266476 154273857 + Gm13133 antisense antisense MGP_CASTEiJ_T0069257.1 MGP_CASTEiJ_G0028208.1 mouse_genomes_project 4 144009452 144032767 - MGP_CASTEiJ_P0069257 1700012P22Rik protein_coding protein_coding MGP_CASTEiJ_T0013958.1 MGP_CASTEiJ_G0012121.1 mouse_genomes_project 4 8787581 8787852 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066589.1 MGP_CASTEiJ_G0027637.1 mouse_genomes_project 4 100881461 100882976 + protein_coding processed_transcript MGP_CASTEiJ_T0066590.1 MGP_CASTEiJ_G0027637.1 mouse_genomes_project 4 100881466 100934483 + MGP_CASTEiJ_P0066590 protein_coding protein_coding MGP_CASTEiJ_T0066591.1 MGP_CASTEiJ_G0027637.1 mouse_genomes_project 4 100881492 100907788 + MGP_CASTEiJ_P0066591 protein_coding protein_coding MGP_CASTEiJ_T0066592.1 MGP_CASTEiJ_G0027637.1 mouse_genomes_project 4 100881502 100898709 + protein_coding processed_transcript MGP_CASTEiJ_T0066593.1 MGP_CASTEiJ_G0027637.1 mouse_genomes_project 4 100881536 100911499 + protein_coding processed_transcript MGP_CASTEiJ_T0066594.1 MGP_CASTEiJ_G0027637.1 mouse_genomes_project 4 100882027 100885743 + protein_coding processed_transcript MGP_CASTEiJ_T0066595.1 MGP_CASTEiJ_G0027637.1 mouse_genomes_project 4 100882343 100894980 + MGP_CASTEiJ_P0066595 protein_coding protein_coding MGP_CASTEiJ_T0066596.1 MGP_CASTEiJ_G0027637.1 mouse_genomes_project 4 100882631 100934478 + MGP_CASTEiJ_P0066596 protein_coding protein_coding MGP_CASTEiJ_T0066597.1 MGP_CASTEiJ_G0027637.1 mouse_genomes_project 4 100882709 100934478 + MGP_CASTEiJ_P0066597 protein_coding protein_coding MGP_CASTEiJ_T0066598.1 MGP_CASTEiJ_G0027637.1 mouse_genomes_project 4 100884370 100885667 + protein_coding processed_transcript MGP_CASTEiJ_T0066599.1 MGP_CASTEiJ_G0027637.1 mouse_genomes_project 4 100886362 100934481 + MGP_CASTEiJ_P0066599 protein_coding protein_coding MGP_CASTEiJ_T0066600.1 MGP_CASTEiJ_G0027637.1 mouse_genomes_project 4 100886466 100910878 + protein_coding retained_intron MGP_CASTEiJ_T0066601.1 MGP_CASTEiJ_G0027637.1 mouse_genomes_project 4 100886486 100912753 + protein_coding retained_intron MGP_CASTEiJ_T0066602.1 MGP_CASTEiJ_G0027637.1 mouse_genomes_project 4 100886547 100931513 + MGP_CASTEiJ_P0066602 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066603.1 MGP_CASTEiJ_G0027637.1 mouse_genomes_project 4 100908162 100931513 + MGP_CASTEiJ_P0066603 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066604.1 MGP_CASTEiJ_G0027637.1 mouse_genomes_project 4 100926964 100931530 + protein_coding processed_transcript MGP_CASTEiJ_T0065598.1 MGP_CASTEiJ_G0027402.1 mouse_genomes_project 4 44553640 44914130 - MGP_CASTEiJ_P0065598 Gabbr2 protein_coding protein_coding MGP_CASTEiJ_T0065599.1 MGP_CASTEiJ_G0027402.1 mouse_genomes_project 4 44555823 44586741 - Gabbr2 protein_coding processed_transcript MGP_CASTEiJ_T0065600.1 MGP_CASTEiJ_G0027402.1 mouse_genomes_project 4 44574712 44626315 - MGP_CASTEiJ_P0065600 Gabbr2 protein_coding protein_coding MGP_CASTEiJ_T0065601.1 MGP_CASTEiJ_G0027402.1 mouse_genomes_project 4 44705379 44769677 - Gabbr2 protein_coding processed_transcript MGP_CASTEiJ_T0067943.1 MGP_CASTEiJ_G0027922.1 mouse_genomes_project 4 125369270 125375226 + MGP_CASTEiJ_P0067943 Tmem35b protein_coding protein_coding MGP_CASTEiJ_T0067944.1 MGP_CASTEiJ_G0027922.1 mouse_genomes_project 4 125371620 125375226 + MGP_CASTEiJ_P0067944 Tmem35b protein_coding protein_coding MGP_CASTEiJ_T0098597.1 MGP_CASTEiJ_G0035528.1 mouse_genomes_project 4 41395892 41396024 + Gm23257 rRNA rRNA MGP_CASTEiJ_T0098378.1 MGP_CASTEiJ_G0035309.1 mouse_genomes_project 4 2970453 2973308 - pseudogene pseudogene MGP_CASTEiJ_T0014257.1 MGP_CASTEiJ_G0012420.1 mouse_genomes_project 4 116819601 116820606 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001364.1 MGP_CASTEiJ_G0001294.1 mouse_genomes_project 4 104147361 104148403 - TEC TEC MGP_CASTEiJ_T0068722.1 MGP_CASTEiJ_G0028078.1 mouse_genomes_project 4 134594979 134659747 + MGP_CASTEiJ_P0068722 Myom3 protein_coding protein_coding MGP_CASTEiJ_T0068723.1 MGP_CASTEiJ_G0028078.1 mouse_genomes_project 4 134640529 134659747 + Myom3 protein_coding retained_intron MGP_CASTEiJ_T0068724.1 MGP_CASTEiJ_G0028078.1 mouse_genomes_project 4 134644680 134650126 + Myom3 protein_coding retained_intron MGP_CASTEiJ_T0068880.1 MGP_CASTEiJ_G0028115.1 mouse_genomes_project 4 136683136 136742317 + Rap1gap protein_coding processed_transcript MGP_CASTEiJ_T0068881.1 MGP_CASTEiJ_G0028115.1 mouse_genomes_project 4 136683164 136735561 + Rap1gap protein_coding retained_intron MGP_CASTEiJ_T0068882.1 MGP_CASTEiJ_G0028115.1 mouse_genomes_project 4 136700481 136756594 + MGP_CASTEiJ_P0068882 Rap1gap protein_coding protein_coding MGP_CASTEiJ_T0068883.1 MGP_CASTEiJ_G0028115.1 mouse_genomes_project 4 136700481 136741537 + MGP_CASTEiJ_P0068883 Rap1gap protein_coding protein_coding MGP_CASTEiJ_T0068884.1 MGP_CASTEiJ_G0028115.1 mouse_genomes_project 4 136700481 136744713 + MGP_CASTEiJ_P0068884 Rap1gap protein_coding protein_coding MGP_CASTEiJ_T0068885.1 MGP_CASTEiJ_G0028115.1 mouse_genomes_project 4 136703758 136756593 + MGP_CASTEiJ_P0068885 Rap1gap protein_coding protein_coding MGP_CASTEiJ_T0068886.1 MGP_CASTEiJ_G0028115.1 mouse_genomes_project 4 136709570 136741568 + Rap1gap protein_coding processed_transcript MGP_CASTEiJ_T0068887.1 MGP_CASTEiJ_G0028115.1 mouse_genomes_project 4 136731310 136756594 + MGP_CASTEiJ_P0068887 Rap1gap protein_coding protein_coding MGP_CASTEiJ_T0068888.1 MGP_CASTEiJ_G0028115.1 mouse_genomes_project 4 136745627 136755084 + MGP_CASTEiJ_P0068888 Rap1gap protein_coding protein_coding MGP_CASTEiJ_T0068889.1 MGP_CASTEiJ_G0028115.1 mouse_genomes_project 4 136750761 136756594 + Rap1gap protein_coding retained_intron MGP_CASTEiJ_T0068890.1 MGP_CASTEiJ_G0028115.1 mouse_genomes_project 4 136752102 136753829 + Rap1gap protein_coding retained_intron MGP_CASTEiJ_T0068891.1 MGP_CASTEiJ_G0028115.1 mouse_genomes_project 4 136754534 136755662 + Rap1gap protein_coding retained_intron MGP_CASTEiJ_T0068892.1 MGP_CASTEiJ_G0028115.1 mouse_genomes_project 4 136754906 136755545 + Rap1gap protein_coding retained_intron MGP_CASTEiJ_T0068893.1 MGP_CASTEiJ_G0028115.1 mouse_genomes_project 4 136754936 136756435 + Rap1gap protein_coding retained_intron MGP_CASTEiJ_T0007830.1 MGP_CASTEiJ_G0006409.1 mouse_genomes_project 4 149436977 149446894 - lincRNA lincRNA MGP_CASTEiJ_T0004490.1 MGP_CASTEiJ_G0003900.1 mouse_genomes_project 4 155650044 155650731 - Mxra8os antisense antisense MGP_CASTEiJ_T0065289.1 MGP_CASTEiJ_G0027342.1 mouse_genomes_project 4 41107576 41109692 - MGP_CASTEiJ_P0065289 Fam166b protein_coding protein_coding MGP_CASTEiJ_T0065290.1 MGP_CASTEiJ_G0027342.1 mouse_genomes_project 4 41107633 41109675 - MGP_CASTEiJ_P0065290 Fam166b protein_coding protein_coding MGP_CASTEiJ_T0065291.1 MGP_CASTEiJ_G0027342.1 mouse_genomes_project 4 41107697 41108582 - MGP_CASTEiJ_P0065291 Fam166b protein_coding protein_coding MGP_CASTEiJ_T0065292.1 MGP_CASTEiJ_G0027342.1 mouse_genomes_project 4 41107697 41109647 - MGP_CASTEiJ_P0065292 Fam166b protein_coding protein_coding MGP_CASTEiJ_T0065293.1 MGP_CASTEiJ_G0027342.1 mouse_genomes_project 4 41107740 41109647 - MGP_CASTEiJ_P0065293 Fam166b protein_coding protein_coding MGP_CASTEiJ_T0065294.1 MGP_CASTEiJ_G0027342.1 mouse_genomes_project 4 41108145 41109647 - MGP_CASTEiJ_P0065294 Fam166b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0007601.1 MGP_CASTEiJ_G0006229.1 mouse_genomes_project 4 155867 167392 - Gm26857 lincRNA lincRNA MGP_CASTEiJ_T0010306.1 MGP_CASTEiJ_G0008494.1 mouse_genomes_project 4 92293868 92293949 + Mir872 miRNA miRNA MGP_CASTEiJ_T0068102.1 MGP_CASTEiJ_G0027958.1 mouse_genomes_project 4 128033429 128042025 - MGP_CASTEiJ_P0068102 Eif3i protein_coding protein_coding MGP_CASTEiJ_T0068103.1 MGP_CASTEiJ_G0027958.1 mouse_genomes_project 4 128034799 128037211 - Eif3i protein_coding retained_intron MGP_CASTEiJ_T0068104.1 MGP_CASTEiJ_G0027958.1 mouse_genomes_project 4 128034996 128041976 - MGP_CASTEiJ_P0068104 Eif3i protein_coding protein_coding MGP_CASTEiJ_T0068105.1 MGP_CASTEiJ_G0027958.1 mouse_genomes_project 4 128036569 128041976 - Eif3i protein_coding processed_transcript MGP_CASTEiJ_T0068106.1 MGP_CASTEiJ_G0027958.1 mouse_genomes_project 4 128039583 128041993 - Eif3i protein_coding retained_intron MGP_CASTEiJ_T0017293.1 MGP_CASTEiJ_G0014855.1 mouse_genomes_project 4 30573230 30580358 - Gm11934 processed_transcript processed_transcript MGP_CASTEiJ_T0066818.1 MGP_CASTEiJ_G0027678.1 mouse_genomes_project 4 105928631 105973616 + MGP_CASTEiJ_P0066818 Slc1a7 protein_coding protein_coding MGP_CASTEiJ_T0066819.1 MGP_CASTEiJ_G0027678.1 mouse_genomes_project 4 105952678 105972611 + MGP_CASTEiJ_P0066819 Slc1a7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066820.1 MGP_CASTEiJ_G0027678.1 mouse_genomes_project 4 105970299 105973610 + Slc1a7 protein_coding retained_intron MGP_CASTEiJ_T0067896.1 MGP_CASTEiJ_G0027916.1 mouse_genomes_project 4 124967269 124976891 - MGP_CASTEiJ_P0067896 Ncdn protein_coding protein_coding MGP_CASTEiJ_T0067897.1 MGP_CASTEiJ_G0027916.1 mouse_genomes_project 4 124968250 124976920 - Ncdn protein_coding processed_transcript MGP_CASTEiJ_T0067898.1 MGP_CASTEiJ_G0027916.1 mouse_genomes_project 4 124968250 124976909 - MGP_CASTEiJ_P0067898 Ncdn protein_coding protein_coding MGP_CASTEiJ_T0007778.1 MGP_CASTEiJ_G0006369.1 mouse_genomes_project 4 129156357 129158155 + Gm12972 lincRNA lincRNA MGP_CASTEiJ_T0004312.1 MGP_CASTEiJ_G0003764.1 mouse_genomes_project 4 39169769 39172477 + antisense antisense MGP_CASTEiJ_T0014228.1 MGP_CASTEiJ_G0012391.1 mouse_genomes_project 4 106968722 106968958 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067773.1 MGP_CASTEiJ_G0027890.1 mouse_genomes_project 4 123104951 123128078 + MGP_CASTEiJ_P0067773 Gnl2 protein_coding protein_coding MGP_CASTEiJ_T0067774.1 MGP_CASTEiJ_G0027890.1 mouse_genomes_project 4 123118046 123147589 + MGP_CASTEiJ_P0067774 Gnl2 protein_coding protein_coding MGP_CASTEiJ_T0067775.1 MGP_CASTEiJ_G0027890.1 mouse_genomes_project 4 123118074 123147594 + MGP_CASTEiJ_P0067775 Gnl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067776.1 MGP_CASTEiJ_G0027890.1 mouse_genomes_project 4 123118089 123147594 + MGP_CASTEiJ_P0067776 Gnl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067777.1 MGP_CASTEiJ_G0027890.1 mouse_genomes_project 4 123118089 123147594 + MGP_CASTEiJ_P0067777 Gnl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067778.1 MGP_CASTEiJ_G0027890.1 mouse_genomes_project 4 123118096 123147594 + MGP_CASTEiJ_P0067778 Gnl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067779.1 MGP_CASTEiJ_G0027890.1 mouse_genomes_project 4 123118112 123131583 + Gnl2 protein_coding processed_transcript MGP_CASTEiJ_T0067780.1 MGP_CASTEiJ_G0027890.1 mouse_genomes_project 4 123131296 123133260 + Gnl2 protein_coding processed_transcript MGP_CASTEiJ_T0067781.1 MGP_CASTEiJ_G0027890.1 mouse_genomes_project 4 123133572 123136609 + Gnl2 protein_coding processed_transcript MGP_CASTEiJ_T0067782.1 MGP_CASTEiJ_G0027890.1 mouse_genomes_project 4 123145366 123147593 + Gnl2 protein_coding processed_transcript MGP_CASTEiJ_T0014301.1 MGP_CASTEiJ_G0012464.1 mouse_genomes_project 4 132899535 132899856 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0070051.1 MGP_CASTEiJ_G0028352.1 mouse_genomes_project 4 155702606 155717880 + MGP_CASTEiJ_P0070051 Acap3 protein_coding protein_coding MGP_CASTEiJ_T0070052.1 MGP_CASTEiJ_G0028352.1 mouse_genomes_project 4 155702659 155717881 + MGP_CASTEiJ_P0070052 Acap3 protein_coding protein_coding MGP_CASTEiJ_T0070053.1 MGP_CASTEiJ_G0028352.1 mouse_genomes_project 4 155702686 155710084 + Acap3 protein_coding processed_transcript MGP_CASTEiJ_T0070054.1 MGP_CASTEiJ_G0028352.1 mouse_genomes_project 4 155703056 155710226 + Acap3 protein_coding processed_transcript MGP_CASTEiJ_T0070055.1 MGP_CASTEiJ_G0028352.1 mouse_genomes_project 4 155703096 155717881 + Acap3 protein_coding processed_transcript MGP_CASTEiJ_T0070056.1 MGP_CASTEiJ_G0028352.1 mouse_genomes_project 4 155712192 155713295 + Acap3 protein_coding retained_intron MGP_CASTEiJ_T0070057.1 MGP_CASTEiJ_G0028352.1 mouse_genomes_project 4 155713183 155715732 + Acap3 protein_coding retained_intron MGP_CASTEiJ_T0070058.1 MGP_CASTEiJ_G0028352.1 mouse_genomes_project 4 155713845 155715963 + Acap3 protein_coding processed_transcript MGP_CASTEiJ_T0070059.1 MGP_CASTEiJ_G0028352.1 mouse_genomes_project 4 155715980 155716539 + Acap3 protein_coding processed_transcript MGP_CASTEiJ_T0098762.1 MGP_CASTEiJ_G0035693.1 mouse_genomes_project 4 131391261 131391426 - Gm22767 scaRNA scaRNA MGP_CASTEiJ_T0004418.1 MGP_CASTEiJ_G0003845.1 mouse_genomes_project 4 131070975 131071890 + Gm12999 antisense antisense MGP_CASTEiJ_T0065047.1 MGP_CASTEiJ_G0027296.1 mouse_genomes_project 4 37838269 37848499 - MGP_CASTEiJ_P0065047 Topors protein_coding protein_coding MGP_CASTEiJ_T0014150.1 MGP_CASTEiJ_G0012313.1 mouse_genomes_project 4 77310942 77311456 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068737.1 MGP_CASTEiJ_G0028081.1 mouse_genomes_project 4 134748353 134776142 + MGP_CASTEiJ_P0068737 Cnr2 protein_coding protein_coding MGP_CASTEiJ_T0068738.1 MGP_CASTEiJ_G0028081.1 mouse_genomes_project 4 134764853 134776142 + MGP_CASTEiJ_P0068738 Cnr2 protein_coding protein_coding MGP_CASTEiJ_T0069554.1 MGP_CASTEiJ_G0028271.1 mouse_genomes_project 4 150268160 150282941 + MGP_CASTEiJ_P0069554 Errfi1 protein_coding protein_coding MGP_CASTEiJ_T0069555.1 MGP_CASTEiJ_G0028271.1 mouse_genomes_project 4 150269338 150270080 + Errfi1 protein_coding processed_transcript MGP_CASTEiJ_T0069556.1 MGP_CASTEiJ_G0028271.1 mouse_genomes_project 4 150269338 150282936 + MGP_CASTEiJ_P0069556 Errfi1 protein_coding protein_coding MGP_CASTEiJ_T0069557.1 MGP_CASTEiJ_G0028271.1 mouse_genomes_project 4 150269343 150283049 + MGP_CASTEiJ_P0069557 Errfi1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0007755.1 MGP_CASTEiJ_G0006355.1 mouse_genomes_project 4 124035340 124047674 - 2610028E06Rik lincRNA lincRNA MGP_CASTEiJ_T0007756.1 MGP_CASTEiJ_G0006355.1 mouse_genomes_project 4 124035340 124072435 - 2610028E06Rik lincRNA lincRNA MGP_CASTEiJ_T0007757.1 MGP_CASTEiJ_G0006355.1 mouse_genomes_project 4 124035687 124072542 - 2610028E06Rik lincRNA lincRNA MGP_CASTEiJ_T0007758.1 MGP_CASTEiJ_G0006355.1 mouse_genomes_project 4 124037899 124067256 - 2610028E06Rik lincRNA lincRNA MGP_CASTEiJ_T0007759.1 MGP_CASTEiJ_G0006355.1 mouse_genomes_project 4 124068667 124072542 - 2610028E06Rik lincRNA lincRNA MGP_CASTEiJ_T0001366.1 MGP_CASTEiJ_G0001296.1 mouse_genomes_project 4 117152877 117153311 - TEC TEC MGP_CASTEiJ_T0010290.1 MGP_CASTEiJ_G0008478.1 mouse_genomes_project 4 38589255 38589319 + Mir3094 miRNA miRNA MGP_CASTEiJ_T0067323.1 MGP_CASTEiJ_G0027780.1 mouse_genomes_project 4 114957212 115198865 - MGP_CASTEiJ_P0067323 Rnf220 protein_coding protein_coding MGP_CASTEiJ_T0067324.1 MGP_CASTEiJ_G0027780.1 mouse_genomes_project 4 114957703 114977349 - MGP_CASTEiJ_P0067324 Rnf220 protein_coding protein_coding MGP_CASTEiJ_T0067325.1 MGP_CASTEiJ_G0027780.1 mouse_genomes_project 4 114957703 114977229 - MGP_CASTEiJ_P0067325 Rnf220 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067326.1 MGP_CASTEiJ_G0027780.1 mouse_genomes_project 4 114959537 115068487 - MGP_CASTEiJ_P0067326 Rnf220 protein_coding protein_coding MGP_CASTEiJ_T0067327.1 MGP_CASTEiJ_G0027780.1 mouse_genomes_project 4 114964100 114973407 - Rnf220 protein_coding processed_transcript MGP_CASTEiJ_T0067328.1 MGP_CASTEiJ_G0027780.1 mouse_genomes_project 4 114965008 114977832 - MGP_CASTEiJ_P0067328 Rnf220 protein_coding protein_coding MGP_CASTEiJ_T0067329.1 MGP_CASTEiJ_G0027780.1 mouse_genomes_project 4 114973024 114977450 - Rnf220 protein_coding processed_transcript MGP_CASTEiJ_T0067330.1 MGP_CASTEiJ_G0027780.1 mouse_genomes_project 4 114973311 114977119 - Rnf220 protein_coding processed_transcript MGP_CASTEiJ_T0067331.1 MGP_CASTEiJ_G0027780.1 mouse_genomes_project 4 114973829 114987957 - Rnf220 protein_coding processed_transcript MGP_CASTEiJ_T0067332.1 MGP_CASTEiJ_G0027780.1 mouse_genomes_project 4 114981670 115192509 - MGP_CASTEiJ_P0067332 Rnf220 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067333.1 MGP_CASTEiJ_G0027780.1 mouse_genomes_project 4 114996156 115198762 - Rnf220 protein_coding processed_transcript MGP_CASTEiJ_T0067334.1 MGP_CASTEiJ_G0027780.1 mouse_genomes_project 4 115192201 115196970 - Rnf220 protein_coding processed_transcript MGP_CASTEiJ_T0069856.1 MGP_CASTEiJ_G0028320.1 mouse_genomes_project 4 154712423 154740321 - MGP_CASTEiJ_P0069856 Plch2 protein_coding protein_coding MGP_CASTEiJ_T0069857.1 MGP_CASTEiJ_G0028320.1 mouse_genomes_project 4 154712434 154725529 - Plch2 protein_coding retained_intron MGP_CASTEiJ_T0069858.1 MGP_CASTEiJ_G0028320.1 mouse_genomes_project 4 154712675 154749156 - MGP_CASTEiJ_P0069858 Plch2 protein_coding protein_coding MGP_CASTEiJ_T0069859.1 MGP_CASTEiJ_G0028320.1 mouse_genomes_project 4 154712675 154736346 - MGP_CASTEiJ_P0069859 Plch2 protein_coding protein_coding MGP_CASTEiJ_T0069860.1 MGP_CASTEiJ_G0028320.1 mouse_genomes_project 4 154712681 154721974 - Plch2 protein_coding retained_intron MGP_CASTEiJ_T0069861.1 MGP_CASTEiJ_G0028320.1 mouse_genomes_project 4 154712685 154740321 - MGP_CASTEiJ_P0069861 Plch2 protein_coding protein_coding MGP_CASTEiJ_T0069862.1 MGP_CASTEiJ_G0028320.1 mouse_genomes_project 4 154712686 154772538 - MGP_CASTEiJ_P0069862 Plch2 protein_coding protein_coding MGP_CASTEiJ_T0069863.1 MGP_CASTEiJ_G0028320.1 mouse_genomes_project 4 154712970 154772593 - MGP_CASTEiJ_P0069863 Plch2 protein_coding protein_coding MGP_CASTEiJ_T0069864.1 MGP_CASTEiJ_G0028320.1 mouse_genomes_project 4 154715010 154784290 - MGP_CASTEiJ_P0069864 Plch2 protein_coding protein_coding MGP_CASTEiJ_T0069865.1 MGP_CASTEiJ_G0028320.1 mouse_genomes_project 4 154727512 154740321 - MGP_CASTEiJ_P0069865 Plch2 protein_coding protein_coding MGP_CASTEiJ_T0069866.1 MGP_CASTEiJ_G0028320.1 mouse_genomes_project 4 154736409 154786001 - MGP_CASTEiJ_P0069866 Plch2 protein_coding protein_coding MGP_CASTEiJ_T0069867.1 MGP_CASTEiJ_G0028320.1 mouse_genomes_project 4 154738415 154749152 - MGP_CASTEiJ_P0069867 Plch2 protein_coding protein_coding MGP_CASTEiJ_T0067035.1 MGP_CASTEiJ_G0027717.1 mouse_genomes_project 4 110203044 110217164 + MGP_CASTEiJ_P0067035 Skint2 protein_coding protein_coding MGP_CASTEiJ_T0067036.1 MGP_CASTEiJ_G0027717.1 mouse_genomes_project 4 110203187 110235783 + MGP_CASTEiJ_P0067036 Skint2 protein_coding protein_coding MGP_CASTEiJ_T0067037.1 MGP_CASTEiJ_G0027717.1 mouse_genomes_project 4 110203198 110231319 + Skint2 protein_coding processed_transcript MGP_CASTEiJ_T0067038.1 MGP_CASTEiJ_G0027717.1 mouse_genomes_project 4 110207024 110231319 + MGP_CASTEiJ_P0067038 Skint2 protein_coding protein_coding MGP_CASTEiJ_T0099815.1 MGP_CASTEiJ_G0036728.1 mouse_genomes_project 4 106550229 106550336 - Gm22345 snRNA snRNA MGP_CASTEiJ_T0014240.1 MGP_CASTEiJ_G0012403.1 mouse_genomes_project 4 112981207 112981532 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067685.1 MGP_CASTEiJ_G0027867.1 mouse_genomes_project 4 121197510 121221277 + Pabpc4 protein_coding processed_transcript MGP_CASTEiJ_T0067686.1 MGP_CASTEiJ_G0027867.1 mouse_genomes_project 4 121217349 121233119 + MGP_CASTEiJ_P0067686 Pabpc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067687.1 MGP_CASTEiJ_G0027867.1 mouse_genomes_project 4 121218156 121233130 + MGP_CASTEiJ_P0067687 Pabpc4 protein_coding protein_coding MGP_CASTEiJ_T0067688.1 MGP_CASTEiJ_G0027867.1 mouse_genomes_project 4 121229251 121232306 + Pabpc4 protein_coding processed_transcript MGP_CASTEiJ_T0067689.1 MGP_CASTEiJ_G0027867.1 mouse_genomes_project 4 121231469 121233129 + Pabpc4 protein_coding retained_intron MGP_CASTEiJ_T0066581.1 MGP_CASTEiJ_G0027636.1 mouse_genomes_project 4 100793727 100835919 - MGP_CASTEiJ_P0066581 Wdr78 protein_coding protein_coding MGP_CASTEiJ_T0066582.1 MGP_CASTEiJ_G0027636.1 mouse_genomes_project 4 100798338 100836098 - Wdr78 protein_coding retained_intron MGP_CASTEiJ_T0066583.1 MGP_CASTEiJ_G0027636.1 mouse_genomes_project 4 100798338 100881371 - MGP_CASTEiJ_P0066583 Wdr78 protein_coding protein_coding MGP_CASTEiJ_T0066584.1 MGP_CASTEiJ_G0027636.1 mouse_genomes_project 4 100798342 100881627 - MGP_CASTEiJ_P0066584 Wdr78 protein_coding protein_coding MGP_CASTEiJ_T0066585.1 MGP_CASTEiJ_G0027636.1 mouse_genomes_project 4 100798342 100881296 - MGP_CASTEiJ_P0066585 Wdr78 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066586.1 MGP_CASTEiJ_G0027636.1 mouse_genomes_project 4 100798374 100838711 - Wdr78 protein_coding retained_intron MGP_CASTEiJ_T0066587.1 MGP_CASTEiJ_G0027636.1 mouse_genomes_project 4 100799627 100801988 - Wdr78 protein_coding processed_transcript MGP_CASTEiJ_T0066588.1 MGP_CASTEiJ_G0027636.1 mouse_genomes_project 4 100847271 100853809 - MGP_CASTEiJ_P0066588 Wdr78 protein_coding protein_coding MGP_CASTEiJ_T0011252.1 MGP_CASTEiJ_G0009440.1 mouse_genomes_project 4 121447765 121447871 + Gm23548 misc_RNA misc_RNA MGP_CASTEiJ_T0099805.1 MGP_CASTEiJ_G0036718.1 mouse_genomes_project 4 94491764 94491828 + Gm27521 snRNA snRNA MGP_CASTEiJ_T0102333.1 MGP_CASTEiJ_G0039058.1 mouse_genomes_project 4 138523203 138524383 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0067578.1 MGP_CASTEiJ_G0027836.1 mouse_genomes_project 4 118175117 118195427 - MGP_CASTEiJ_P0067578 Foxo6 protein_coding protein_coding MGP_CASTEiJ_T0069208.1 MGP_CASTEiJ_G0028190.1 mouse_genomes_project 4 141245424 141283275 - MGP_CASTEiJ_P0069208 Ctrc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069210.1 MGP_CASTEiJ_G0028190.1 mouse_genomes_project 4 141275816 141283369 - Ctrc protein_coding processed_transcript MGP_CASTEiJ_T0069211.1 MGP_CASTEiJ_G0028190.1 mouse_genomes_project 4 141275816 141283295 - MGP_CASTEiJ_P0069211 Ctrc protein_coding protein_coding MGP_CASTEiJ_T0069212.1 MGP_CASTEiJ_G0028190.1 mouse_genomes_project 4 141275816 141283371 - MGP_CASTEiJ_P0069212 Ctrc protein_coding protein_coding MGP_CASTEiJ_T0069213.1 MGP_CASTEiJ_G0028190.1 mouse_genomes_project 4 141281830 141282224 - Ctrc protein_coding processed_transcript MGP_CASTEiJ_T0014035.1 MGP_CASTEiJ_G0012198.1 mouse_genomes_project 4 32315842 32316184 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065123.1 MGP_CASTEiJ_G0027317.1 mouse_genomes_project 4 39157371 39160127 - 1110017D15Rik protein_coding processed_transcript MGP_CASTEiJ_T0065124.1 MGP_CASTEiJ_G0027317.1 mouse_genomes_project 4 39157371 39160117 - 1110017D15Rik protein_coding processed_transcript MGP_CASTEiJ_T0065125.1 MGP_CASTEiJ_G0027317.1 mouse_genomes_project 4 39157371 39160122 - 1110017D15Rik protein_coding processed_transcript MGP_CASTEiJ_T0065126.1 MGP_CASTEiJ_G0027317.1 mouse_genomes_project 4 39157371 39169666 - MGP_CASTEiJ_P0065126 1110017D15Rik protein_coding protein_coding MGP_CASTEiJ_T0065127.1 MGP_CASTEiJ_G0027317.1 mouse_genomes_project 4 39157371 39163832 - MGP_CASTEiJ_P0065127 1110017D15Rik protein_coding protein_coding MGP_CASTEiJ_T0065128.1 MGP_CASTEiJ_G0027317.1 mouse_genomes_project 4 39157371 39169666 - MGP_CASTEiJ_P0065128 1110017D15Rik protein_coding protein_coding MGP_CASTEiJ_T0065129.1 MGP_CASTEiJ_G0027317.1 mouse_genomes_project 4 39159487 39169661 - 1110017D15Rik protein_coding processed_transcript MGP_CASTEiJ_T0065130.1 MGP_CASTEiJ_G0027317.1 mouse_genomes_project 4 39160894 39161325 - 1110017D15Rik protein_coding processed_transcript MGP_CASTEiJ_T0007635.1 MGP_CASTEiJ_G0006257.1 mouse_genomes_project 4 34403519 34445090 + Gm12371 lincRNA lincRNA MGP_CASTEiJ_T0001360.1 MGP_CASTEiJ_G0001290.1 mouse_genomes_project 4 45793619 45901870 - TEC TEC MGP_CASTEiJ_T0011237.1 MGP_CASTEiJ_G0009425.1 mouse_genomes_project 4 52706216 52706458 + Gm25687 misc_RNA misc_RNA MGP_CASTEiJ_T0067509.1 MGP_CASTEiJ_G0027823.1 mouse_genomes_project 4 117108054 117112473 + MGP_CASTEiJ_P0067509 Cldn19 protein_coding protein_coding MGP_CASTEiJ_T0067510.1 MGP_CASTEiJ_G0027823.1 mouse_genomes_project 4 117108149 117115940 + MGP_CASTEiJ_P0067510 Cldn19 protein_coding protein_coding MGP_CASTEiJ_T0101082.1 MGP_CASTEiJ_G0037995.1 mouse_genomes_project 4 125039826 125039956 - Gm24161 snoRNA snoRNA MGP_CASTEiJ_T0069681.1 MGP_CASTEiJ_G0028291.1 mouse_genomes_project 4 151822382 151833489 + MGP_CASTEiJ_P0069681 Gpr153 protein_coding protein_coding MGP_CASTEiJ_T0069682.1 MGP_CASTEiJ_G0028291.1 mouse_genomes_project 4 151822512 151833489 + MGP_CASTEiJ_P0069682 Gpr153 protein_coding protein_coding MGP_CASTEiJ_T0069683.1 MGP_CASTEiJ_G0028291.1 mouse_genomes_project 4 151827167 151833489 + MGP_CASTEiJ_P0069683 Gpr153 protein_coding protein_coding MGP_CASTEiJ_T0069684.1 MGP_CASTEiJ_G0028291.1 mouse_genomes_project 4 151830514 151833488 + Gpr153 protein_coding processed_transcript MGP_CASTEiJ_T0069047.1 MGP_CASTEiJ_G0028154.1 mouse_genomes_project 4 139292982 139536859 - MGP_CASTEiJ_P0069047 Igsf21 protein_coding protein_coding MGP_CASTEiJ_T0064961.1 MGP_CASTEiJ_G0027277.1 mouse_genomes_project 4 31235187 31247351 + Cnr1 protein_coding processed_transcript MGP_CASTEiJ_T0064962.1 MGP_CASTEiJ_G0027277.1 mouse_genomes_project 4 31235226 31260871 + MGP_CASTEiJ_P0064962 Cnr1 protein_coding protein_coding MGP_CASTEiJ_T0064963.1 MGP_CASTEiJ_G0027277.1 mouse_genomes_project 4 31236796 31260859 + MGP_CASTEiJ_P0064963 Cnr1 protein_coding protein_coding MGP_CASTEiJ_T0101033.1 MGP_CASTEiJ_G0037946.1 mouse_genomes_project 4 38847438 38847519 - Gm24837 snoRNA snoRNA MGP_CASTEiJ_T0067299.1 MGP_CASTEiJ_G0027776.1 mouse_genomes_project 4 114827355 114829777 - MGP_CASTEiJ_P0067299 Rps8 protein_coding protein_coding MGP_CASTEiJ_T0067300.1 MGP_CASTEiJ_G0027776.1 mouse_genomes_project 4 114827362 114828031 - Rps8 protein_coding retained_intron MGP_CASTEiJ_T0067301.1 MGP_CASTEiJ_G0027776.1 mouse_genomes_project 4 114827908 114828715 - Rps8 protein_coding retained_intron MGP_CASTEiJ_T0067302.1 MGP_CASTEiJ_G0027776.1 mouse_genomes_project 4 114827927 114829618 - Rps8 protein_coding retained_intron MGP_CASTEiJ_T0067303.1 MGP_CASTEiJ_G0027776.1 mouse_genomes_project 4 114828043 114829603 - Rps8 protein_coding retained_intron MGP_CASTEiJ_T0067304.1 MGP_CASTEiJ_G0027776.1 mouse_genomes_project 4 114828219 114829606 - Rps8 protein_coding retained_intron MGP_CASTEiJ_T0010289.1 MGP_CASTEiJ_G0008477.1 mouse_genomes_project 4 38303572 38303651 + Mir207 miRNA miRNA MGP_CASTEiJ_T0014156.1 MGP_CASTEiJ_G0012319.1 mouse_genomes_project 4 80402970 80403171 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102319.1 MGP_CASTEiJ_G0039044.1 mouse_genomes_project 4 111647291 111648301 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0066545.1 MGP_CASTEiJ_G0027632.1 mouse_genomes_project 4 99795132 100355499 + MGP_CASTEiJ_P0066545 Pde4b protein_coding protein_coding MGP_CASTEiJ_T0066546.1 MGP_CASTEiJ_G0027632.1 mouse_genomes_project 4 99795314 99908622 + Pde4b protein_coding retained_intron MGP_CASTEiJ_T0066547.1 MGP_CASTEiJ_G0027632.1 mouse_genomes_project 4 99795330 100305908 + MGP_CASTEiJ_P0066547 Pde4b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066548.1 MGP_CASTEiJ_G0027632.1 mouse_genomes_project 4 99976248 100304229 + MGP_CASTEiJ_P0066548 Pde4b protein_coding protein_coding MGP_CASTEiJ_T0066549.1 MGP_CASTEiJ_G0027632.1 mouse_genomes_project 4 99976508 100356929 + MGP_CASTEiJ_P0066549 Pde4b protein_coding protein_coding MGP_CASTEiJ_T0066550.1 MGP_CASTEiJ_G0027632.1 mouse_genomes_project 4 99976735 100252853 + MGP_CASTEiJ_P0066550 Pde4b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066551.1 MGP_CASTEiJ_G0027632.1 mouse_genomes_project 4 100163640 100355203 + MGP_CASTEiJ_P0066551 Pde4b protein_coding protein_coding MGP_CASTEiJ_T0066552.1 MGP_CASTEiJ_G0027632.1 mouse_genomes_project 4 100172200 100290801 + MGP_CASTEiJ_P0066552 Pde4b protein_coding protein_coding MGP_CASTEiJ_T0066553.1 MGP_CASTEiJ_G0027632.1 mouse_genomes_project 4 100214748 100235730 + Pde4b protein_coding retained_intron MGP_CASTEiJ_T0066554.1 MGP_CASTEiJ_G0027632.1 mouse_genomes_project 4 100234982 100355085 + MGP_CASTEiJ_P0066554 Pde4b protein_coding protein_coding MGP_CASTEiJ_T0066555.1 MGP_CASTEiJ_G0027632.1 mouse_genomes_project 4 100234987 100351729 + MGP_CASTEiJ_P0066555 Pde4b protein_coding unknown_likely_coding MGP_CASTEiJ_T0066556.1 MGP_CASTEiJ_G0027632.1 mouse_genomes_project 4 100318388 100355519 + MGP_CASTEiJ_P0066556 Pde4b protein_coding protein_coding MGP_CASTEiJ_T0066557.1 MGP_CASTEiJ_G0027632.1 mouse_genomes_project 4 100339349 100355533 + MGP_CASTEiJ_P0066557 Pde4b protein_coding protein_coding MGP_CASTEiJ_T0066558.1 MGP_CASTEiJ_G0027632.1 mouse_genomes_project 4 100339469 100353116 + MGP_CASTEiJ_P0066558 Pde4b protein_coding protein_coding MGP_CASTEiJ_T0004326.1 MGP_CASTEiJ_G0003776.1 mouse_genomes_project 4 44166969 44218447 - Gm12446 antisense antisense MGP_CASTEiJ_T0004327.1 MGP_CASTEiJ_G0003776.1 mouse_genomes_project 4 44202604 44220543 - Gm12446 antisense antisense MGP_CASTEiJ_T0007637.1 MGP_CASTEiJ_G0006259.1 mouse_genomes_project 4 36128023 36425106 - lincRNA lincRNA MGP_CASTEiJ_T0099823.1 MGP_CASTEiJ_G0036736.1 mouse_genomes_project 4 114888265 114888381 + Gm23287 snRNA snRNA MGP_CASTEiJ_T0065621.1 MGP_CASTEiJ_G0027407.1 mouse_genomes_project 4 45419305 45424991 - Alg2 protein_coding processed_transcript MGP_CASTEiJ_T0065622.1 MGP_CASTEiJ_G0027407.1 mouse_genomes_project 4 45424053 45428551 - MGP_CASTEiJ_P0065622 Alg2 protein_coding protein_coding MGP_CASTEiJ_T0065623.1 MGP_CASTEiJ_G0027407.1 mouse_genomes_project 4 45426114 45428195 - MGP_CASTEiJ_P0065623 Alg2 protein_coding protein_coding MGP_CASTEiJ_T0067305.1 MGP_CASTEiJ_G0027777.1 mouse_genomes_project 4 114834138 114858135 - MGP_CASTEiJ_P0067305 Kif2c protein_coding protein_coding MGP_CASTEiJ_T0067306.1 MGP_CASTEiJ_G0027777.1 mouse_genomes_project 4 114834657 114858099 - MGP_CASTEiJ_P0067306 Kif2c protein_coding unknown_likely_coding MGP_CASTEiJ_T0067307.1 MGP_CASTEiJ_G0027777.1 mouse_genomes_project 4 114834669 114853258 - MGP_CASTEiJ_P0067307 Kif2c protein_coding protein_coding MGP_CASTEiJ_T0067308.1 MGP_CASTEiJ_G0027777.1 mouse_genomes_project 4 114839204 114839938 - Kif2c protein_coding retained_intron MGP_CASTEiJ_T0067309.1 MGP_CASTEiJ_G0027777.1 mouse_genomes_project 4 114848196 114858038 - Kif2c protein_coding retained_intron MGP_CASTEiJ_T0067310.1 MGP_CASTEiJ_G0027777.1 mouse_genomes_project 4 114848198 114858102 - Kif2c protein_coding processed_transcript MGP_CASTEiJ_T0067311.1 MGP_CASTEiJ_G0027777.1 mouse_genomes_project 4 114848963 114858088 - Kif2c protein_coding retained_intron MGP_CASTEiJ_T0067312.1 MGP_CASTEiJ_G0027777.1 mouse_genomes_project 4 114849503 114853240 - Kif2c protein_coding processed_transcript MGP_CASTEiJ_T0067313.1 MGP_CASTEiJ_G0027777.1 mouse_genomes_project 4 114849546 114853256 - MGP_CASTEiJ_P0067313 Kif2c protein_coding protein_coding MGP_CASTEiJ_T0068406.1 MGP_CASTEiJ_G0028012.1 mouse_genomes_project 4 131463349 131496059 - MGP_CASTEiJ_P0068406 Fam76a protein_coding protein_coding MGP_CASTEiJ_T0068407.1 MGP_CASTEiJ_G0028012.1 mouse_genomes_project 4 131465184 131496025 - MGP_CASTEiJ_P0068407 Fam76a protein_coding unknown_likely_coding MGP_CASTEiJ_T0068408.1 MGP_CASTEiJ_G0028012.1 mouse_genomes_project 4 131479792 131492766 - MGP_CASTEiJ_P0068408 Fam76a protein_coding protein_coding MGP_CASTEiJ_T0069311.1 MGP_CASTEiJ_G0028228.1 mouse_genomes_project 4 147120202 147121563 + MGP_CASTEiJ_P0069311 Nppa protein_coding protein_coding MGP_CASTEiJ_T0065676.1 MGP_CASTEiJ_G0027425.1 mouse_genomes_project 4 47682435 47689186 + MGP_CASTEiJ_P0065676 Rnf20 protein_coding protein_coding MGP_CASTEiJ_T0065677.1 MGP_CASTEiJ_G0027425.1 mouse_genomes_project 4 47682489 47707353 + MGP_CASTEiJ_P0065677 Rnf20 protein_coding protein_coding MGP_CASTEiJ_T0065678.1 MGP_CASTEiJ_G0027425.1 mouse_genomes_project 4 47682489 47700716 + MGP_CASTEiJ_P0065678 Rnf20 protein_coding protein_coding MGP_CASTEiJ_T0065679.1 MGP_CASTEiJ_G0027425.1 mouse_genomes_project 4 47682495 47707354 + MGP_CASTEiJ_P0065679 Rnf20 protein_coding protein_coding MGP_CASTEiJ_T0065680.1 MGP_CASTEiJ_G0027425.1 mouse_genomes_project 4 47682522 47695001 + MGP_CASTEiJ_P0065680 Rnf20 protein_coding protein_coding MGP_CASTEiJ_T0065681.1 MGP_CASTEiJ_G0027425.1 mouse_genomes_project 4 47682566 47690494 + Rnf20 protein_coding processed_transcript MGP_CASTEiJ_T0065682.1 MGP_CASTEiJ_G0027425.1 mouse_genomes_project 4 47682588 47693440 + Rnf20 protein_coding processed_transcript MGP_CASTEiJ_T0065683.1 MGP_CASTEiJ_G0027425.1 mouse_genomes_project 4 47682869 47706886 + MGP_CASTEiJ_P0065683 Rnf20 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065684.1 MGP_CASTEiJ_G0027425.1 mouse_genomes_project 4 47692198 47698904 + Rnf20 protein_coding processed_transcript MGP_CASTEiJ_T0065685.1 MGP_CASTEiJ_G0027425.1 mouse_genomes_project 4 47700727 47703288 + Rnf20 protein_coding processed_transcript MGP_CASTEiJ_T0065686.1 MGP_CASTEiJ_G0027425.1 mouse_genomes_project 4 47701432 47703012 + Rnf20 protein_coding processed_transcript MGP_CASTEiJ_T0067642.1 MGP_CASTEiJ_G0027852.1 mouse_genomes_project 4 119239670 119247098 - MGP_CASTEiJ_P0067642 Gm12886 protein_coding protein_coding MGP_CASTEiJ_T0069760.1 MGP_CASTEiJ_G0028303.1 mouse_genomes_project 4 153680282 153690665 + MGP_CASTEiJ_P0069760 Lrrc47 protein_coding protein_coding MGP_CASTEiJ_T0069761.1 MGP_CASTEiJ_G0028303.1 mouse_genomes_project 4 153680349 153689762 + MGP_CASTEiJ_P0069761 Lrrc47 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069762.1 MGP_CASTEiJ_G0028303.1 mouse_genomes_project 4 153680349 153689632 + MGP_CASTEiJ_P0069762 Lrrc47 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069763.1 MGP_CASTEiJ_G0028303.1 mouse_genomes_project 4 153680350 153690670 + MGP_CASTEiJ_P0069763 Lrrc47 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069764.1 MGP_CASTEiJ_G0028303.1 mouse_genomes_project 4 153685884 153688231 + Lrrc47 protein_coding retained_intron MGP_CASTEiJ_T0069765.1 MGP_CASTEiJ_G0028303.1 mouse_genomes_project 4 153688113 153690050 + MGP_CASTEiJ_P0069765 Lrrc47 protein_coding protein_coding MGP_CASTEiJ_T0069766.1 MGP_CASTEiJ_G0028303.1 mouse_genomes_project 4 153688810 153689826 + MGP_CASTEiJ_P0069766 Lrrc47 protein_coding protein_coding MGP_CASTEiJ_T0010344.1 MGP_CASTEiJ_G0008532.1 mouse_genomes_project 4 137396942 137397052 - Gm27646 miRNA miRNA MGP_CASTEiJ_T0010299.1 MGP_CASTEiJ_G0008487.1 mouse_genomes_project 4 60146834 60146916 + Mir455 miRNA miRNA MGP_CASTEiJ_T0014169.1 MGP_CASTEiJ_G0012332.1 mouse_genomes_project 4 86959648 86961936 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069017.1 MGP_CASTEiJ_G0028146.1 mouse_genomes_project 4 138533167 138559115 + MGP_CASTEiJ_P0069017 Emc1 protein_coding protein_coding MGP_CASTEiJ_T0069018.1 MGP_CASTEiJ_G0028146.1 mouse_genomes_project 4 138533173 138559115 + MGP_CASTEiJ_P0069018 Emc1 protein_coding protein_coding MGP_CASTEiJ_T0069019.1 MGP_CASTEiJ_G0028146.1 mouse_genomes_project 4 138533173 138559115 + MGP_CASTEiJ_P0069019 Emc1 protein_coding protein_coding MGP_CASTEiJ_T0069020.1 MGP_CASTEiJ_G0028146.1 mouse_genomes_project 4 138533189 138534887 + Emc1 protein_coding processed_transcript MGP_CASTEiJ_T0069022.1 MGP_CASTEiJ_G0028146.1 mouse_genomes_project 4 138539512 138556127 + Emc1 protein_coding processed_transcript MGP_CASTEiJ_T0014273.1 MGP_CASTEiJ_G0012436.1 mouse_genomes_project 4 121193241 121194096 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011226.1 MGP_CASTEiJ_G0009414.1 mouse_genomes_project 4 15515220 15515519 - Gm24419 misc_RNA misc_RNA MGP_CASTEiJ_T0014279.1 MGP_CASTEiJ_G0012442.1 mouse_genomes_project 4 121910155 121910482 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066625.1 MGP_CASTEiJ_G0027642.1 mouse_genomes_project 4 102571390 102614367 + MGP_CASTEiJ_P0066625 C8b protein_coding unknown_likely_coding MGP_CASTEiJ_T0066626.1 MGP_CASTEiJ_G0027642.1 mouse_genomes_project 4 102573062 102613533 + MGP_CASTEiJ_P0066626 C8b protein_coding protein_coding MGP_CASTEiJ_T0066627.1 MGP_CASTEiJ_G0027642.1 mouse_genomes_project 4 102573140 102613156 + MGP_CASTEiJ_P0066627 C8b protein_coding protein_coding MGP_CASTEiJ_T0066628.1 MGP_CASTEiJ_G0027642.1 mouse_genomes_project 4 102608183 102613525 + C8b protein_coding processed_transcript MGP_CASTEiJ_T0068967.1 MGP_CASTEiJ_G0028131.1 mouse_genomes_project 4 137878294 137885380 - MGP_CASTEiJ_P0068967 Pla2g2f protein_coding protein_coding MGP_CASTEiJ_T0004444.1 MGP_CASTEiJ_G0003866.1 mouse_genomes_project 4 141281289 141283984 + Ctrcos antisense antisense MGP_CASTEiJ_T0014159.1 MGP_CASTEiJ_G0012322.1 mouse_genomes_project 4 81763640 81763947 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065021.1 MGP_CASTEiJ_G0027292.1 mouse_genomes_project 4 33080874 33223331 - MGP_CASTEiJ_P0065021 Lingo2 protein_coding protein_coding MGP_CASTEiJ_T0065022.1 MGP_CASTEiJ_G0027292.1 mouse_genomes_project 4 33081633 34401777 - MGP_CASTEiJ_P0065022 Lingo2 protein_coding protein_coding MGP_CASTEiJ_T0065023.1 MGP_CASTEiJ_G0027292.1 mouse_genomes_project 4 33081633 33530433 - MGP_CASTEiJ_P0065023 Lingo2 protein_coding protein_coding MGP_CASTEiJ_T0065024.1 MGP_CASTEiJ_G0027292.1 mouse_genomes_project 4 33081633 33223331 - MGP_CASTEiJ_P0065024 Lingo2 protein_coding protein_coding MGP_CASTEiJ_T0065025.1 MGP_CASTEiJ_G0027292.1 mouse_genomes_project 4 33082070 33442157 - MGP_CASTEiJ_P0065025 Lingo2 protein_coding protein_coding MGP_CASTEiJ_T0065026.1 MGP_CASTEiJ_G0027292.1 mouse_genomes_project 4 33442154 34401038 - Lingo2 protein_coding processed_transcript MGP_CASTEiJ_T0065027.1 MGP_CASTEiJ_G0027292.1 mouse_genomes_project 4 34145815 34402298 - Lingo2 protein_coding processed_transcript MGP_CASTEiJ_T0065028.1 MGP_CASTEiJ_G0027292.1 mouse_genomes_project 4 34148547 34401019 - Lingo2 protein_coding processed_transcript MGP_CASTEiJ_T0065029.1 MGP_CASTEiJ_G0027292.1 mouse_genomes_project 4 34148792 34401041 - Lingo2 protein_coding processed_transcript MGP_CASTEiJ_T0065030.1 MGP_CASTEiJ_G0027292.1 mouse_genomes_project 4 34401653 34402301 - Lingo2 protein_coding processed_transcript MGP_CASTEiJ_T0004361.1 MGP_CASTEiJ_G0003800.1 mouse_genomes_project 4 98230129 98234669 - Ube2uos antisense antisense MGP_CASTEiJ_T0011235.1 MGP_CASTEiJ_G0009423.1 mouse_genomes_project 4 49679473 49679742 + Gm22563 misc_RNA misc_RNA MGP_CASTEiJ_T0067284.1 MGP_CASTEiJ_G0027773.1 mouse_genomes_project 4 114791146 114794263 - Btbd19 protein_coding processed_transcript MGP_CASTEiJ_T0067285.1 MGP_CASTEiJ_G0027773.1 mouse_genomes_project 4 114791809 114794318 - Btbd19 protein_coding processed_transcript MGP_CASTEiJ_T0067286.1 MGP_CASTEiJ_G0027773.1 mouse_genomes_project 4 114792107 114797341 - MGP_CASTEiJ_P0067286 Btbd19 protein_coding protein_coding MGP_CASTEiJ_T0067287.1 MGP_CASTEiJ_G0027773.1 mouse_genomes_project 4 114792583 114794292 - Btbd19 protein_coding processed_transcript MGP_CASTEiJ_T0067288.1 MGP_CASTEiJ_G0027773.1 mouse_genomes_project 4 114792638 114793198 - Btbd19 protein_coding retained_intron MGP_CASTEiJ_T0067289.1 MGP_CASTEiJ_G0027773.1 mouse_genomes_project 4 114792661 114793810 - Btbd19 protein_coding retained_intron MGP_CASTEiJ_T0067290.1 MGP_CASTEiJ_G0027773.1 mouse_genomes_project 4 114793245 114797448 - MGP_CASTEiJ_P0067290 Btbd19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067291.1 MGP_CASTEiJ_G0027773.1 mouse_genomes_project 4 114793372 114797381 - MGP_CASTEiJ_P0067291 Btbd19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067292.1 MGP_CASTEiJ_G0027773.1 mouse_genomes_project 4 114795664 114796889 - Btbd19 protein_coding processed_transcript MGP_CASTEiJ_T0099844.1 MGP_CASTEiJ_G0036757.1 mouse_genomes_project 4 137964507 137964615 - Gm25280 snRNA snRNA MGP_CASTEiJ_T0017366.1 MGP_CASTEiJ_G0014900.1 mouse_genomes_project 4 154366850 154376473 - Gm13110 processed_transcript processed_transcript MGP_CASTEiJ_T0017279.1 MGP_CASTEiJ_G0014848.1 mouse_genomes_project 4 6348686 6396617 + 4930412C18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017280.1 MGP_CASTEiJ_G0014848.1 mouse_genomes_project 4 6348686 6398076 + 4930412C18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017281.1 MGP_CASTEiJ_G0014848.1 mouse_genomes_project 4 6348752 6355125 + 4930412C18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017282.1 MGP_CASTEiJ_G0014848.1 mouse_genomes_project 4 6348780 6359123 + 4930412C18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017283.1 MGP_CASTEiJ_G0014848.1 mouse_genomes_project 4 6348898 6394948 + 4930412C18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0014014.1 MGP_CASTEiJ_G0012177.1 mouse_genomes_project 4 26119870 26120049 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065944.1 MGP_CASTEiJ_G0027494.1 mouse_genomes_project 4 59411342 59510170 + MGP_CASTEiJ_P0065944 protein_coding protein_coding MGP_CASTEiJ_T0065945.1 MGP_CASTEiJ_G0027494.1 mouse_genomes_project 4 59431405 59507769 + MGP_CASTEiJ_P0065945 protein_coding protein_coding MGP_CASTEiJ_T0065946.1 MGP_CASTEiJ_G0027494.1 mouse_genomes_project 4 59453831 59474297 + protein_coding processed_transcript MGP_CASTEiJ_T0065947.1 MGP_CASTEiJ_G0027494.1 mouse_genomes_project 4 59469937 59510170 + MGP_CASTEiJ_P0065947 protein_coding protein_coding MGP_CASTEiJ_T0065948.1 MGP_CASTEiJ_G0027494.1 mouse_genomes_project 4 59473911 59481666 + protein_coding processed_transcript MGP_CASTEiJ_T0065949.1 MGP_CASTEiJ_G0027494.1 mouse_genomes_project 4 59474089 59476869 + protein_coding retained_intron MGP_CASTEiJ_T0065950.1 MGP_CASTEiJ_G0027494.1 mouse_genomes_project 4 59484689 59551700 + protein_coding retained_intron MGP_CASTEiJ_T0065951.1 MGP_CASTEiJ_G0027494.1 mouse_genomes_project 4 59484689 59556790 + protein_coding retained_intron MGP_CASTEiJ_T0065952.1 MGP_CASTEiJ_G0027494.1 mouse_genomes_project 4 59502896 59510170 + protein_coding retained_intron MGP_CASTEiJ_T0065953.1 MGP_CASTEiJ_G0027494.1 mouse_genomes_project 4 59520691 59551263 + MGP_CASTEiJ_P0065953 protein_coding protein_coding MGP_CASTEiJ_T0065954.1 MGP_CASTEiJ_G0027494.1 mouse_genomes_project 4 59527807 59543544 + protein_coding processed_transcript MGP_CASTEiJ_T0065955.1 MGP_CASTEiJ_G0027494.1 mouse_genomes_project 4 59543041 59556792 + MGP_CASTEiJ_P0065955 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065956.1 MGP_CASTEiJ_G0027494.1 mouse_genomes_project 4 59553235 59556790 + protein_coding retained_intron MGP_CASTEiJ_T0065957.1 MGP_CASTEiJ_G0027494.1 mouse_genomes_project 4 59553449 59554924 + protein_coding processed_transcript MGP_CASTEiJ_T0065958.1 MGP_CASTEiJ_G0027494.1 mouse_genomes_project 4 59553460 59557760 + MGP_CASTEiJ_P0065958 protein_coding protein_coding MGP_CASTEiJ_T0011256.1 MGP_CASTEiJ_G0009444.1 mouse_genomes_project 4 151746139 151746457 - Gm27500 misc_RNA misc_RNA MGP_CASTEiJ_T0014198.1 MGP_CASTEiJ_G0012361.1 mouse_genomes_project 4 97137288 97138287 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069254.1 MGP_CASTEiJ_G0028206.1 mouse_genomes_project 4 143950603 143961395 - MGP_CASTEiJ_P0069254 Gm13125 protein_coding protein_coding MGP_CASTEiJ_T0007689.1 MGP_CASTEiJ_G0006304.1 mouse_genomes_project 4 81359668 81362509 - 6030471H07Rik lincRNA lincRNA MGP_CASTEiJ_T0013991.1 MGP_CASTEiJ_G0012154.1 mouse_genomes_project 4 20502639 20503056 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066470.1 MGP_CASTEiJ_G0027613.1 mouse_genomes_project 4 96875249 96952703 + MGP_CASTEiJ_P0066470 Atg4c protein_coding protein_coding MGP_CASTEiJ_T0066471.1 MGP_CASTEiJ_G0027613.1 mouse_genomes_project 4 96875462 96952699 + MGP_CASTEiJ_P0066471 Atg4c protein_coding protein_coding MGP_CASTEiJ_T0066472.1 MGP_CASTEiJ_G0027613.1 mouse_genomes_project 4 96875489 96950774 + MGP_CASTEiJ_P0066472 Atg4c protein_coding unknown_likely_coding MGP_CASTEiJ_T0066473.1 MGP_CASTEiJ_G0027613.1 mouse_genomes_project 4 96901534 96916250 + Atg4c protein_coding processed_transcript MGP_CASTEiJ_T0004428.1 MGP_CASTEiJ_G0003854.1 mouse_genomes_project 4 136718723 136730379 - Rap1gapos antisense antisense MGP_CASTEiJ_T0067048.1 MGP_CASTEiJ_G0027724.1 mouse_genomes_project 4 112606872 112607739 - MGP_CASTEiJ_P0067048 Foxe3 protein_coding protein_coding MGP_CASTEiJ_T0065393.1 MGP_CASTEiJ_G0027359.1 mouse_genomes_project 4 41372743 41389640 + protein_coding processed_transcript MGP_CASTEiJ_T0065394.1 MGP_CASTEiJ_G0027359.1 mouse_genomes_project 4 41372807 41393595 + MGP_CASTEiJ_P0065394 protein_coding protein_coding MGP_CASTEiJ_T0065395.1 MGP_CASTEiJ_G0027359.1 mouse_genomes_project 4 41373041 41388843 + MGP_CASTEiJ_P0065395 protein_coding protein_coding MGP_CASTEiJ_T0065396.1 MGP_CASTEiJ_G0027359.1 mouse_genomes_project 4 41373102 41384536 + protein_coding processed_transcript MGP_CASTEiJ_T0065397.1 MGP_CASTEiJ_G0027359.1 mouse_genomes_project 4 41377631 41389432 + protein_coding processed_transcript MGP_CASTEiJ_T0065398.1 MGP_CASTEiJ_G0027359.1 mouse_genomes_project 4 41392922 41393729 + protein_coding processed_transcript MGP_CASTEiJ_T0068948.1 MGP_CASTEiJ_G0028126.1 mouse_genomes_project 4 137512708 137535409 + MGP_CASTEiJ_P0068948 Mul1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068949.1 MGP_CASTEiJ_G0028126.1 mouse_genomes_project 4 137522899 137532179 + MGP_CASTEiJ_P0068949 Mul1 protein_coding protein_coding MGP_CASTEiJ_T0068950.1 MGP_CASTEiJ_G0028126.1 mouse_genomes_project 4 137522905 137532176 + MGP_CASTEiJ_P0068950 Mul1 protein_coding protein_coding MGP_CASTEiJ_T0068951.1 MGP_CASTEiJ_G0028126.1 mouse_genomes_project 4 137522946 137535409 + MGP_CASTEiJ_P0068951 Mul1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068952.1 MGP_CASTEiJ_G0028126.1 mouse_genomes_project 4 137522951 137527243 + MGP_CASTEiJ_P0068952 Mul1 protein_coding protein_coding MGP_CASTEiJ_T0004474.1 MGP_CASTEiJ_G0003888.1 mouse_genomes_project 4 150823516 150826623 + 4930589P08Rik antisense antisense MGP_CASTEiJ_T0099841.1 MGP_CASTEiJ_G0036754.1 mouse_genomes_project 4 135023756 135023859 + Gm26001 snRNA snRNA MGP_CASTEiJ_T0007725.1 MGP_CASTEiJ_G0006333.1 mouse_genomes_project 4 104734912 104741355 - Gm12746 lincRNA lincRNA MGP_CASTEiJ_T0017372.1 MGP_CASTEiJ_G0014903.1 mouse_genomes_project 4 155390122 155408290 - Gm16023 processed_transcript processed_transcript MGP_CASTEiJ_T0017373.1 MGP_CASTEiJ_G0014903.1 mouse_genomes_project 4 155397797 155408015 - Gm16023 processed_transcript processed_transcript MGP_CASTEiJ_T0067808.1 MGP_CASTEiJ_G0027898.1 mouse_genomes_project 4 124224460 124261580 + MGP_CASTEiJ_P0067808 Oscp1 protein_coding protein_coding MGP_CASTEiJ_T0067809.1 MGP_CASTEiJ_G0027898.1 mouse_genomes_project 4 124224508 124258007 + MGP_CASTEiJ_P0067809 Oscp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067810.1 MGP_CASTEiJ_G0027898.1 mouse_genomes_project 4 124224576 124261588 + MGP_CASTEiJ_P0067810 Oscp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067811.1 MGP_CASTEiJ_G0027898.1 mouse_genomes_project 4 124231731 124257778 + Oscp1 protein_coding processed_transcript MGP_CASTEiJ_T0067812.1 MGP_CASTEiJ_G0027898.1 mouse_genomes_project 4 124252309 124253803 + Oscp1 protein_coding processed_transcript MGP_CASTEiJ_T0067813.1 MGP_CASTEiJ_G0027898.1 mouse_genomes_project 4 124257024 124257996 + Oscp1 protein_coding processed_transcript MGP_CASTEiJ_T0066324.1 MGP_CASTEiJ_G0027582.1 mouse_genomes_project 4 92116188 92175425 - MGP_CASTEiJ_P0066324 Caap1 protein_coding protein_coding MGP_CASTEiJ_T0066325.1 MGP_CASTEiJ_G0027582.1 mouse_genomes_project 4 92167490 92175395 - Caap1 protein_coding processed_transcript MGP_CASTEiJ_T0013977.1 MGP_CASTEiJ_G0012140.1 mouse_genomes_project 4 15284434 15286557 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004380.1 MGP_CASTEiJ_G0003814.1 mouse_genomes_project 4 112828459 112833316 + Cyp4x1os antisense antisense MGP_CASTEiJ_T0066223.1 MGP_CASTEiJ_G0027548.1 mouse_genomes_project 4 83982614 83984232 + MGP_CASTEiJ_P0066223 Rraga protein_coding protein_coding MGP_CASTEiJ_T0064707.1 MGP_CASTEiJ_G0027214.1 mouse_genomes_project 4 8798161 8799994 + MGP_CASTEiJ_P0064707 protein_coding protein_coding MGP_CASTEiJ_T0066445.1 MGP_CASTEiJ_G0027610.1 mouse_genomes_project 4 96580595 96598275 + MGP_CASTEiJ_P0066445 protein_coding protein_coding MGP_CASTEiJ_T0066446.1 MGP_CASTEiJ_G0027610.1 mouse_genomes_project 4 96580749 96585053 + MGP_CASTEiJ_P0066446 protein_coding protein_coding MGP_CASTEiJ_T0066447.1 MGP_CASTEiJ_G0027610.1 mouse_genomes_project 4 96584879 96587674 + MGP_CASTEiJ_P0066447 protein_coding protein_coding MGP_CASTEiJ_T0066102.1 MGP_CASTEiJ_G0027531.1 mouse_genomes_project 4 77313800 77314944 + MGP_CASTEiJ_P0066102 protein_coding protein_coding MGP_CASTEiJ_T0007607.1 MGP_CASTEiJ_G0006234.1 mouse_genomes_project 4 7048475 7298390 - lincRNA lincRNA MGP_CASTEiJ_T0007608.1 MGP_CASTEiJ_G0006234.1 mouse_genomes_project 4 7071039 7364274 - lincRNA lincRNA MGP_CASTEiJ_T0007609.1 MGP_CASTEiJ_G0006234.1 mouse_genomes_project 4 7301202 7364258 - lincRNA lincRNA MGP_CASTEiJ_T0007610.1 MGP_CASTEiJ_G0006234.1 mouse_genomes_project 4 7301478 7364261 - lincRNA lincRNA MGP_CASTEiJ_T0007753.1 MGP_CASTEiJ_G0006353.1 mouse_genomes_project 4 122619939 122627097 + 4933407E24Rik lincRNA lincRNA MGP_CASTEiJ_T0101028.1 MGP_CASTEiJ_G0037941.1 mouse_genomes_project 4 31329810 31329897 + Gm22010 snoRNA snoRNA MGP_CASTEiJ_T0069925.1 MGP_CASTEiJ_G0028330.1 mouse_genomes_project 4 155256054 155330486 + MGP_CASTEiJ_P0069925 Gnb1 protein_coding protein_coding MGP_CASTEiJ_T0069926.1 MGP_CASTEiJ_G0028330.1 mouse_genomes_project 4 155256057 155330486 + MGP_CASTEiJ_P0069926 Gnb1 protein_coding protein_coding MGP_CASTEiJ_T0069927.1 MGP_CASTEiJ_G0028330.1 mouse_genomes_project 4 155256063 155330486 + MGP_CASTEiJ_P0069927 Gnb1 protein_coding protein_coding MGP_CASTEiJ_T0069928.1 MGP_CASTEiJ_G0028330.1 mouse_genomes_project 4 155257612 155312395 + MGP_CASTEiJ_P0069928 Gnb1 protein_coding protein_coding MGP_CASTEiJ_T0069929.1 MGP_CASTEiJ_G0028330.1 mouse_genomes_project 4 155289126 155326379 + MGP_CASTEiJ_P0069929 Gnb1 protein_coding protein_coding MGP_CASTEiJ_T0069930.1 MGP_CASTEiJ_G0028330.1 mouse_genomes_project 4 155289300 155310762 + Gnb1 protein_coding retained_intron MGP_CASTEiJ_T0069931.1 MGP_CASTEiJ_G0028330.1 mouse_genomes_project 4 155297088 155330484 + MGP_CASTEiJ_P0069931 Gnb1 protein_coding protein_coding MGP_CASTEiJ_T0069932.1 MGP_CASTEiJ_G0028330.1 mouse_genomes_project 4 155312235 155326448 + Gnb1 protein_coding retained_intron MGP_CASTEiJ_T0069933.1 MGP_CASTEiJ_G0028330.1 mouse_genomes_project 4 155324460 155328896 + Gnb1 protein_coding retained_intron MGP_CASTEiJ_T0010294.1 MGP_CASTEiJ_G0008482.1 mouse_genomes_project 4 42652094 42652218 + Gm22639 miRNA miRNA MGP_CASTEiJ_T0066236.1 MGP_CASTEiJ_G0027552.1 mouse_genomes_project 4 84263682 84269402 - MGP_CASTEiJ_P0066236 Rps6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066237.1 MGP_CASTEiJ_G0027552.1 mouse_genomes_project 4 84263682 84269402 - MGP_CASTEiJ_P0066237 Rps6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066238.1 MGP_CASTEiJ_G0027552.1 mouse_genomes_project 4 84263682 84269402 - MGP_CASTEiJ_P0066238 Rps6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066239.1 MGP_CASTEiJ_G0027552.1 mouse_genomes_project 4 84265531 84269444 - MGP_CASTEiJ_P0066239 Rps6 protein_coding protein_coding MGP_CASTEiJ_T0066240.1 MGP_CASTEiJ_G0027552.1 mouse_genomes_project 4 84265573 84269358 - MGP_CASTEiJ_P0066240 Rps6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066241.1 MGP_CASTEiJ_G0027552.1 mouse_genomes_project 4 84265675 84269377 - Rps6 protein_coding processed_transcript MGP_CASTEiJ_T0066242.1 MGP_CASTEiJ_G0027552.1 mouse_genomes_project 4 84267890 84269364 - Rps6 protein_coding processed_transcript MGP_CASTEiJ_T0068177.1 MGP_CASTEiJ_G0027968.1 mouse_genomes_project 4 128404866 128436691 + MGP_CASTEiJ_P0068177 Spocd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068178.1 MGP_CASTEiJ_G0027968.1 mouse_genomes_project 4 128425181 128433134 + MGP_CASTEiJ_P0068178 Spocd1 protein_coding protein_coding MGP_CASTEiJ_T0068179.1 MGP_CASTEiJ_G0027968.1 mouse_genomes_project 4 128425355 128436684 + MGP_CASTEiJ_P0068179 Spocd1 protein_coding protein_coding MGP_CASTEiJ_T0017306.1 MGP_CASTEiJ_G0014864.1 mouse_genomes_project 4 56155599 56161756 - Gm12526 processed_transcript processed_transcript MGP_CASTEiJ_T0004347.1 MGP_CASTEiJ_G0003795.1 mouse_genomes_project 4 92657566 92675175 + Junos antisense antisense MGP_CASTEiJ_T0004348.1 MGP_CASTEiJ_G0003795.1 mouse_genomes_project 4 92659007 92668415 + Junos antisense antisense MGP_CASTEiJ_T0004349.1 MGP_CASTEiJ_G0003795.1 mouse_genomes_project 4 92659296 92767016 + Junos antisense antisense MGP_CASTEiJ_T0004350.1 MGP_CASTEiJ_G0003795.1 mouse_genomes_project 4 92684857 92764188 + Junos antisense antisense MGP_CASTEiJ_T0004351.1 MGP_CASTEiJ_G0003795.1 mouse_genomes_project 4 92685004 92743581 + Junos antisense antisense MGP_CASTEiJ_T0004352.1 MGP_CASTEiJ_G0003795.1 mouse_genomes_project 4 92701355 92769001 + Junos antisense antisense MGP_CASTEiJ_T0004353.1 MGP_CASTEiJ_G0003795.1 mouse_genomes_project 4 92708417 92775228 + Junos antisense antisense MGP_CASTEiJ_T0004354.1 MGP_CASTEiJ_G0003795.1 mouse_genomes_project 4 92729643 92776639 + Junos antisense antisense MGP_CASTEiJ_T0065645.1 MGP_CASTEiJ_G0027413.1 mouse_genomes_project 4 46428627 46478212 - MGP_CASTEiJ_P0065645 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065646.1 MGP_CASTEiJ_G0027413.1 mouse_genomes_project 4 46428687 46473529 - MGP_CASTEiJ_P0065646 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065647.1 MGP_CASTEiJ_G0027413.1 mouse_genomes_project 4 46461601 46462737 - protein_coding retained_intron MGP_CASTEiJ_T0065648.1 MGP_CASTEiJ_G0027413.1 mouse_genomes_project 4 46472311 46474598 - protein_coding processed_transcript MGP_CASTEiJ_T0065649.1 MGP_CASTEiJ_G0027413.1 mouse_genomes_project 4 46473812 46478471 - protein_coding retained_intron MGP_CASTEiJ_T0065537.1 MGP_CASTEiJ_G0027388.1 mouse_genomes_project 4 43747356 43766373 + Ccdc180 protein_coding processed_transcript MGP_CASTEiJ_T0065538.1 MGP_CASTEiJ_G0027388.1 mouse_genomes_project 4 43747356 43812491 + MGP_CASTEiJ_P0065538 Ccdc180 protein_coding protein_coding MGP_CASTEiJ_T0065539.1 MGP_CASTEiJ_G0027388.1 mouse_genomes_project 4 43747907 43812484 + MGP_CASTEiJ_P0065539 Ccdc180 protein_coding protein_coding MGP_CASTEiJ_T0065540.1 MGP_CASTEiJ_G0027388.1 mouse_genomes_project 4 43771101 43779827 + MGP_CASTEiJ_P0065540 Ccdc180 protein_coding protein_coding MGP_CASTEiJ_T0066025.1 MGP_CASTEiJ_G0027513.1 mouse_genomes_project 4 62362028 62586273 - MGP_CASTEiJ_P0066025 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0007819.1 MGP_CASTEiJ_G0006398.1 mouse_genomes_project 4 140236510 140241890 + 4930515B02Rik lincRNA lincRNA MGP_CASTEiJ_T0014178.1 MGP_CASTEiJ_G0012341.1 mouse_genomes_project 4 90565418 90565911 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004298.1 MGP_CASTEiJ_G0003754.1 mouse_genomes_project 4 11615502 11642320 + Gm11837 antisense antisense MGP_CASTEiJ_T0004299.1 MGP_CASTEiJ_G0003754.1 mouse_genomes_project 4 11617067 11642457 + Gm11837 antisense antisense MGP_CASTEiJ_T0004300.1 MGP_CASTEiJ_G0003754.1 mouse_genomes_project 4 11617082 11642332 + Gm11837 antisense antisense MGP_CASTEiJ_T0017315.1 MGP_CASTEiJ_G0014870.1 mouse_genomes_project 4 86622566 86649803 - Gm12602 processed_transcript processed_transcript MGP_CASTEiJ_T0017316.1 MGP_CASTEiJ_G0014870.1 mouse_genomes_project 4 86645497 86649758 - Gm12602 processed_transcript processed_transcript MGP_CASTEiJ_T0101045.1 MGP_CASTEiJ_G0037958.1 mouse_genomes_project 4 53731536 53731670 - Gm22150 snoRNA snoRNA MGP_CASTEiJ_T0010283.1 MGP_CASTEiJ_G0008471.1 mouse_genomes_project 4 20475517 20475607 - Gm25978 miRNA miRNA MGP_CASTEiJ_T0007741.1 MGP_CASTEiJ_G0006345.1 mouse_genomes_project 4 116833506 116834332 - Gm12862 lincRNA lincRNA MGP_CASTEiJ_T0014281.1 MGP_CASTEiJ_G0012444.1 mouse_genomes_project 4 122777806 122778460 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066005.1 MGP_CASTEiJ_G0027505.1 mouse_genomes_project 4 60491956 60516989 + MGP_CASTEiJ_P0066005 Tmem268 protein_coding protein_coding MGP_CASTEiJ_T0066006.1 MGP_CASTEiJ_G0027505.1 mouse_genomes_project 4 60492031 60495655 + Tmem268 protein_coding processed_transcript MGP_CASTEiJ_T0066007.1 MGP_CASTEiJ_G0027505.1 mouse_genomes_project 4 60493400 60504216 + MGP_CASTEiJ_P0066007 Tmem268 protein_coding protein_coding MGP_CASTEiJ_T0066008.1 MGP_CASTEiJ_G0027505.1 mouse_genomes_project 4 60493400 60504247 + MGP_CASTEiJ_P0066008 Tmem268 protein_coding protein_coding MGP_CASTEiJ_T0066009.1 MGP_CASTEiJ_G0027505.1 mouse_genomes_project 4 60493533 60516985 + MGP_CASTEiJ_P0066009 Tmem268 protein_coding protein_coding MGP_CASTEiJ_T0004341.1 MGP_CASTEiJ_G0003790.1 mouse_genomes_project 4 80670400 80688630 - Gm11413 antisense antisense MGP_CASTEiJ_T0004435.1 MGP_CASTEiJ_G0003859.1 mouse_genomes_project 4 139409064 139410394 + Gm13027 antisense antisense MGP_CASTEiJ_T0007650.1 MGP_CASTEiJ_G0006271.1 mouse_genomes_project 4 45973517 45975575 + Gm12434 lincRNA lincRNA MGP_CASTEiJ_T0066291.1 MGP_CASTEiJ_G0027568.1 mouse_genomes_project 4 86293321 86295219 + MGP_CASTEiJ_P0066291 protein_coding protein_coding MGP_CASTEiJ_T0099777.1 MGP_CASTEiJ_G0036690.1 mouse_genomes_project 4 31404584 31404692 + Gm25623 snRNA snRNA MGP_CASTEiJ_T0067629.1 MGP_CASTEiJ_G0027848.1 mouse_genomes_project 4 119005365 119022047 + MGP_CASTEiJ_P0067629 Col9a2 protein_coding protein_coding MGP_CASTEiJ_T0067630.1 MGP_CASTEiJ_G0027848.1 mouse_genomes_project 4 119005640 119028430 + MGP_CASTEiJ_P0067630 Col9a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067631.1 MGP_CASTEiJ_G0027848.1 mouse_genomes_project 4 119005666 119020820 + MGP_CASTEiJ_P0067631 Col9a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067632.1 MGP_CASTEiJ_G0027848.1 mouse_genomes_project 4 119005728 119011105 + Col9a2 protein_coding retained_intron MGP_CASTEiJ_T0067633.1 MGP_CASTEiJ_G0027848.1 mouse_genomes_project 4 119019720 119021545 + Col9a2 protein_coding processed_transcript MGP_CASTEiJ_T0007616.1 MGP_CASTEiJ_G0006239.1 mouse_genomes_project 4 8933987 8978161 + Gm11846 lincRNA lincRNA MGP_CASTEiJ_T0098940.1 MGP_CASTEiJ_G0035864.1 mouse_genomes_project 4 79868498 79870755 - Gm11267 sense_intronic sense_intronic MGP_CASTEiJ_T0067259.1 MGP_CASTEiJ_G0027768.1 mouse_genomes_project 4 114540170 114651650 + MGP_CASTEiJ_P0067259 Zswim5 protein_coding protein_coding MGP_CASTEiJ_T0066281.1 MGP_CASTEiJ_G0027562.1 mouse_genomes_project 4 86081137 86087860 - MGP_CASTEiJ_P0066281 C87499 protein_coding protein_coding MGP_CASTEiJ_T0066282.1 MGP_CASTEiJ_G0027562.1 mouse_genomes_project 4 86081137 86087908 - MGP_CASTEiJ_P0066282 C87499 protein_coding protein_coding MGP_CASTEiJ_T0066283.1 MGP_CASTEiJ_G0027562.1 mouse_genomes_project 4 86081986 86088060 - MGP_CASTEiJ_P0066283 C87499 protein_coding protein_coding MGP_CASTEiJ_T0066284.1 MGP_CASTEiJ_G0027562.1 mouse_genomes_project 4 86082715 86087791 - MGP_CASTEiJ_P0066284 C87499 protein_coding protein_coding MGP_CASTEiJ_T0066285.1 MGP_CASTEiJ_G0027562.1 mouse_genomes_project 4 86083005 86087840 - MGP_CASTEiJ_P0066285 C87499 protein_coding protein_coding MGP_CASTEiJ_T0101076.1 MGP_CASTEiJ_G0037989.1 mouse_genomes_project 4 115915334 115915438 + Gm23382 snoRNA snoRNA MGP_CASTEiJ_T0070034.1 MGP_CASTEiJ_G0028349.1 mouse_genomes_project 4 155675970 155680682 - MGP_CASTEiJ_P0070034 Cptp protein_coding protein_coding MGP_CASTEiJ_T0070035.1 MGP_CASTEiJ_G0028349.1 mouse_genomes_project 4 155676545 155680604 - Cptp protein_coding processed_transcript MGP_CASTEiJ_T0070036.1 MGP_CASTEiJ_G0028349.1 mouse_genomes_project 4 155677616 155680061 - MGP_CASTEiJ_P0070036 Cptp protein_coding protein_coding MGP_CASTEiJ_T0064627.1 MGP_CASTEiJ_G0027198.1 mouse_genomes_project 4 7442086 7471074 + MGP_CASTEiJ_P0064627 2610301B20Rik protein_coding protein_coding MGP_CASTEiJ_T0064628.1 MGP_CASTEiJ_G0027198.1 mouse_genomes_project 4 7442113 7465139 + 2610301B20Rik protein_coding processed_transcript MGP_CASTEiJ_T0064629.1 MGP_CASTEiJ_G0027198.1 mouse_genomes_project 4 7442153 7469733 + 2610301B20Rik protein_coding processed_transcript MGP_CASTEiJ_T0064630.1 MGP_CASTEiJ_G0027198.1 mouse_genomes_project 4 7442156 7471078 + MGP_CASTEiJ_P0064630 2610301B20Rik protein_coding protein_coding MGP_CASTEiJ_T0064631.1 MGP_CASTEiJ_G0027198.1 mouse_genomes_project 4 7447854 7462802 + 2610301B20Rik protein_coding processed_transcript MGP_CASTEiJ_T0065089.1 MGP_CASTEiJ_G0027308.1 mouse_genomes_project 4 38708072 38713612 - MGP_CASTEiJ_P0065089 Aqp3 protein_coding protein_coding MGP_CASTEiJ_T0065922.1 MGP_CASTEiJ_G0027488.1 mouse_genomes_project 4 59294364 59313744 - MGP_CASTEiJ_P0065922 Wdr31 protein_coding protein_coding MGP_CASTEiJ_T0065923.1 MGP_CASTEiJ_G0027488.1 mouse_genomes_project 4 59295343 59313744 - MGP_CASTEiJ_P0065923 Wdr31 protein_coding protein_coding MGP_CASTEiJ_T0065924.1 MGP_CASTEiJ_G0027488.1 mouse_genomes_project 4 59295343 59302109 - MGP_CASTEiJ_P0065924 Wdr31 protein_coding protein_coding MGP_CASTEiJ_T0065925.1 MGP_CASTEiJ_G0027488.1 mouse_genomes_project 4 59295343 59313744 - MGP_CASTEiJ_P0065925 Wdr31 protein_coding protein_coding MGP_CASTEiJ_T0065926.1 MGP_CASTEiJ_G0027488.1 mouse_genomes_project 4 59295456 59313803 - MGP_CASTEiJ_P0065926 Wdr31 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065927.1 MGP_CASTEiJ_G0027488.1 mouse_genomes_project 4 59295566 59313803 - MGP_CASTEiJ_P0065927 Wdr31 protein_coding unknown_likely_coding MGP_CASTEiJ_T0065928.1 MGP_CASTEiJ_G0027488.1 mouse_genomes_project 4 59299235 59300979 - Wdr31 protein_coding retained_intron MGP_CASTEiJ_T0065929.1 MGP_CASTEiJ_G0027488.1 mouse_genomes_project 4 59300092 59302546 - Wdr31 protein_coding retained_intron MGP_CASTEiJ_T0065930.1 MGP_CASTEiJ_G0027488.1 mouse_genomes_project 4 59306198 59313753 - MGP_CASTEiJ_P0065930 Wdr31 protein_coding protein_coding MGP_CASTEiJ_T0065931.1 MGP_CASTEiJ_G0027488.1 mouse_genomes_project 4 59306853 59313731 - MGP_CASTEiJ_P0065931 Wdr31 protein_coding protein_coding MGP_CASTEiJ_T0064572.1 MGP_CASTEiJ_G0027189.1 mouse_genomes_project 4 2918843 2981171 - Nsmaf protein_coding retained_intron MGP_CASTEiJ_T0064573.1 MGP_CASTEiJ_G0027189.1 mouse_genomes_project 4 2918843 2981171 - MGP_CASTEiJ_P0064573 Nsmaf protein_coding protein_coding MGP_CASTEiJ_T0064574.1 MGP_CASTEiJ_G0027189.1 mouse_genomes_project 4 2919047 2923315 - Nsmaf protein_coding retained_intron MGP_CASTEiJ_T0064575.1 MGP_CASTEiJ_G0027189.1 mouse_genomes_project 4 2919405 2980996 - Nsmaf protein_coding processed_transcript MGP_CASTEiJ_T0064576.1 MGP_CASTEiJ_G0027189.1 mouse_genomes_project 4 2931834 2981155 - Nsmaf protein_coding processed_transcript MGP_CASTEiJ_T0064577.1 MGP_CASTEiJ_G0027189.1 mouse_genomes_project 4 2934452 2949448 - Nsmaf protein_coding retained_intron MGP_CASTEiJ_T0064578.1 MGP_CASTEiJ_G0027189.1 mouse_genomes_project 4 2950029 2957207 - Nsmaf protein_coding retained_intron MGP_CASTEiJ_T0064579.1 MGP_CASTEiJ_G0027189.1 mouse_genomes_project 4 2953916 2980479 - Nsmaf protein_coding processed_transcript MGP_CASTEiJ_T0064580.1 MGP_CASTEiJ_G0027189.1 mouse_genomes_project 4 2955195 2971743 - Nsmaf protein_coding processed_transcript MGP_CASTEiJ_T0064581.1 MGP_CASTEiJ_G0027189.1 mouse_genomes_project 4 2957780 2980997 - MGP_CASTEiJ_P0064581 Nsmaf protein_coding protein_coding MGP_CASTEiJ_T0064582.1 MGP_CASTEiJ_G0027189.1 mouse_genomes_project 4 2962421 2969811 - Nsmaf protein_coding processed_transcript MGP_CASTEiJ_T0066395.1 MGP_CASTEiJ_G0027595.1 mouse_genomes_project 4 93810702 93843375 - MGP_CASTEiJ_P0066395 Cyp2j7 protein_coding protein_coding MGP_CASTEiJ_T0069194.1 MGP_CASTEiJ_G0028184.1 mouse_genomes_project 4 141112860 141158624 - MGP_CASTEiJ_P0069194 protein_coding protein_coding MGP_CASTEiJ_T0069195.1 MGP_CASTEiJ_G0028184.1 mouse_genomes_project 4 141118945 141158624 - MGP_CASTEiJ_P0069195 protein_coding protein_coding MGP_CASTEiJ_T0066344.1 MGP_CASTEiJ_G0027588.1 mouse_genomes_project 4 92507503 92523508 - MGP_CASTEiJ_P0066344 Eqtn protein_coding protein_coding MGP_CASTEiJ_T0066345.1 MGP_CASTEiJ_G0027588.1 mouse_genomes_project 4 92507667 92523459 - MGP_CASTEiJ_P0066345 Eqtn protein_coding protein_coding MGP_CASTEiJ_T0066738.1 MGP_CASTEiJ_G0027667.1 mouse_genomes_project 4 105152515 105175908 - MGP_CASTEiJ_P0066738 Lrrc42 protein_coding protein_coding MGP_CASTEiJ_T0066739.1 MGP_CASTEiJ_G0027667.1 mouse_genomes_project 4 105152518 105162315 - Lrrc42 protein_coding retained_intron MGP_CASTEiJ_T0066740.1 MGP_CASTEiJ_G0027667.1 mouse_genomes_project 4 105152760 105154971 - Lrrc42 protein_coding retained_intron MGP_CASTEiJ_T0066741.1 MGP_CASTEiJ_G0027667.1 mouse_genomes_project 4 105152940 105158695 - MGP_CASTEiJ_P0066741 Lrrc42 protein_coding protein_coding MGP_CASTEiJ_T0066742.1 MGP_CASTEiJ_G0027667.1 mouse_genomes_project 4 105168822 105175535 - MGP_CASTEiJ_P0066742 Lrrc42 protein_coding protein_coding MGP_CASTEiJ_T0067617.1 MGP_CASTEiJ_G0027845.1 mouse_genomes_project 4 118882412 118883247 - MGP_CASTEiJ_P0067617 Exo5 protein_coding protein_coding MGP_CASTEiJ_T0067618.1 MGP_CASTEiJ_G0027845.1 mouse_genomes_project 4 118882412 118888228 - MGP_CASTEiJ_P0067618 Exo5 protein_coding protein_coding MGP_CASTEiJ_T0067619.1 MGP_CASTEiJ_G0027845.1 mouse_genomes_project 4 118882418 118888228 - MGP_CASTEiJ_P0067619 Exo5 protein_coding protein_coding MGP_CASTEiJ_T0067620.1 MGP_CASTEiJ_G0027845.1 mouse_genomes_project 4 118883491 118888240 - MGP_CASTEiJ_P0067620 Exo5 protein_coding protein_coding MGP_CASTEiJ_T0065048.1 MGP_CASTEiJ_G0027297.1 mouse_genomes_project 4 37849256 37857702 - MGP_CASTEiJ_P0065048 Ndufb6 protein_coding protein_coding MGP_CASTEiJ_T0065049.1 MGP_CASTEiJ_G0027297.1 mouse_genomes_project 4 37849330 37857690 - MGP_CASTEiJ_P0065049 Ndufb6 protein_coding protein_coding MGP_CASTEiJ_T0068839.1 MGP_CASTEiJ_G0028105.1 mouse_genomes_project 4 135874836 135908044 - MGP_CASTEiJ_P0068839 Epha8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068840.1 MGP_CASTEiJ_G0028105.1 mouse_genomes_project 4 135878822 135908043 - MGP_CASTEiJ_P0068840 Epha8 protein_coding protein_coding MGP_CASTEiJ_T0068446.1 MGP_CASTEiJ_G0028020.1 mouse_genomes_project 4 131878706 131890894 - MGP_CASTEiJ_P0068446 Tmem222 protein_coding protein_coding MGP_CASTEiJ_T0068447.1 MGP_CASTEiJ_G0028020.1 mouse_genomes_project 4 131879491 131890764 - MGP_CASTEiJ_P0068447 Tmem222 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068448.1 MGP_CASTEiJ_G0028020.1 mouse_genomes_project 4 131879537 131890872 - MGP_CASTEiJ_P0068448 Tmem222 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068449.1 MGP_CASTEiJ_G0028020.1 mouse_genomes_project 4 131879548 131890720 - MGP_CASTEiJ_P0068449 Tmem222 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0068450.1 MGP_CASTEiJ_G0028020.1 mouse_genomes_project 4 131879563 131882779 - Tmem222 protein_coding retained_intron MGP_CASTEiJ_T0068451.1 MGP_CASTEiJ_G0028020.1 mouse_genomes_project 4 131883553 131890853 - Tmem222 protein_coding retained_intron MGP_CASTEiJ_T0066061.1 MGP_CASTEiJ_G0027523.1 mouse_genomes_project 4 70819808 70889492 - MGP_CASTEiJ_P0066061 Rasef protein_coding protein_coding MGP_CASTEiJ_T0066062.1 MGP_CASTEiJ_G0027523.1 mouse_genomes_project 4 70819808 70889599 - MGP_CASTEiJ_P0066062 Rasef protein_coding protein_coding MGP_CASTEiJ_T0065891.1 MGP_CASTEiJ_G0027478.1 mouse_genomes_project 4 58281662 58292659 - MGP_CASTEiJ_P0065891 Inip protein_coding protein_coding MGP_CASTEiJ_T0065892.1 MGP_CASTEiJ_G0027478.1 mouse_genomes_project 4 58283532 58292625 - Inip protein_coding processed_transcript MGP_CASTEiJ_T0065893.1 MGP_CASTEiJ_G0027478.1 mouse_genomes_project 4 58289800 58292636 - Inip protein_coding processed_transcript MGP_CASTEiJ_T0069686.1 MGP_CASTEiJ_G0028293.1 mouse_genomes_project 4 151844835 151854663 + MGP_CASTEiJ_P0069686 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0069687.1 MGP_CASTEiJ_G0028293.1 mouse_genomes_project 4 151844879 151854669 + MGP_CASTEiJ_P0069687 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069688.1 MGP_CASTEiJ_G0028293.1 mouse_genomes_project 4 151844879 151854669 + MGP_CASTEiJ_P0069688 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069689.1 MGP_CASTEiJ_G0028293.1 mouse_genomes_project 4 151845187 151848284 + protein_coding processed_transcript MGP_CASTEiJ_T0069690.1 MGP_CASTEiJ_G0028293.1 mouse_genomes_project 4 151852926 151854611 + protein_coding processed_transcript MGP_CASTEiJ_T0004458.1 MGP_CASTEiJ_G0003876.1 mouse_genomes_project 4 148128502 148129317 - Gm15969 antisense antisense MGP_CASTEiJ_T0007624.1 MGP_CASTEiJ_G0006246.1 mouse_genomes_project 4 19377259 19381971 + lincRNA lincRNA MGP_CASTEiJ_T0010300.1 MGP_CASTEiJ_G0008488.1 mouse_genomes_project 4 64596375 64596470 + Gm44497 miRNA miRNA MGP_CASTEiJ_T0099807.1 MGP_CASTEiJ_G0036720.1 mouse_genomes_project 4 97600418 97600500 + Gm26425 snRNA snRNA MGP_CASTEiJ_T0099797.1 MGP_CASTEiJ_G0036710.1 mouse_genomes_project 4 80570843 80570950 - Gm23412 snRNA snRNA MGP_CASTEiJ_T0067945.1 MGP_CASTEiJ_G0027923.1 mouse_genomes_project 4 125424047 125497644 + MGP_CASTEiJ_P0067945 Dlgap3 protein_coding protein_coding MGP_CASTEiJ_T0067946.1 MGP_CASTEiJ_G0027923.1 mouse_genomes_project 4 125427676 125497644 + MGP_CASTEiJ_P0067946 Dlgap3 protein_coding protein_coding MGP_CASTEiJ_T0067947.1 MGP_CASTEiJ_G0027923.1 mouse_genomes_project 4 125450566 125496990 + MGP_CASTEiJ_P0067947 Dlgap3 protein_coding protein_coding MGP_CASTEiJ_T0067948.1 MGP_CASTEiJ_G0027923.1 mouse_genomes_project 4 125463223 125474160 + Dlgap3 protein_coding processed_transcript MGP_CASTEiJ_T0007818.1 MGP_CASTEiJ_G0006397.1 mouse_genomes_project 4 139740101 139764927 + Gm13026 lincRNA lincRNA MGP_CASTEiJ_T0013952.1 MGP_CASTEiJ_G0012115.1 mouse_genomes_project 4 7525113 7525597 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004432.1 MGP_CASTEiJ_G0003856.1 mouse_genomes_project 4 137193617 137194542 - 1700095J12Rik antisense antisense MGP_CASTEiJ_T0004393.1 MGP_CASTEiJ_G0003826.1 mouse_genomes_project 4 117105167 117109585 - Gm12927 antisense antisense MGP_CASTEiJ_T0066026.1 MGP_CASTEiJ_G0027514.1 mouse_genomes_project 4 62368115 63380357 - MGP_CASTEiJ_P0066026 Astn2 protein_coding protein_coding MGP_CASTEiJ_T0066027.1 MGP_CASTEiJ_G0027514.1 mouse_genomes_project 4 62368115 63380229 - MGP_CASTEiJ_P0066027 Astn2 protein_coding protein_coding MGP_CASTEiJ_T0102304.1 MGP_CASTEiJ_G0039029.1 mouse_genomes_project 4 51112930 51113882 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099825.1 MGP_CASTEiJ_G0036738.1 mouse_genomes_project 4 118864329 118864433 + Gm24678 snRNA snRNA MGP_CASTEiJ_T0014121.1 MGP_CASTEiJ_G0012284.1 mouse_genomes_project 4 68367052 68367489 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068474.1 MGP_CASTEiJ_G0028026.1 mouse_genomes_project 4 132174462 132188394 - MGP_CASTEiJ_P0068474 Nudc protein_coding unknown_likely_coding MGP_CASTEiJ_T0068475.1 MGP_CASTEiJ_G0028026.1 mouse_genomes_project 4 132174466 132188489 - MGP_CASTEiJ_P0068475 Nudc protein_coding protein_coding MGP_CASTEiJ_T0068476.1 MGP_CASTEiJ_G0028026.1 mouse_genomes_project 4 132175066 132175362 - Nudc protein_coding processed_transcript MGP_CASTEiJ_T0068477.1 MGP_CASTEiJ_G0028026.1 mouse_genomes_project 4 132176168 132177823 - Nudc protein_coding processed_transcript MGP_CASTEiJ_T0004302.1 MGP_CASTEiJ_G0003756.1 mouse_genomes_project 4 16825997 16831350 - 4930480G23Rik antisense antisense MGP_CASTEiJ_T0014232.1 MGP_CASTEiJ_G0012395.1 mouse_genomes_project 4 108593384 108593652 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068976.1 MGP_CASTEiJ_G0028134.1 mouse_genomes_project 4 138005496 138021269 + MGP_CASTEiJ_P0068976 Pla2g2e protein_coding protein_coding MGP_CASTEiJ_T0068978.1 MGP_CASTEiJ_G0028134.1 mouse_genomes_project 4 138016592 138021147 + MGP_CASTEiJ_P0068978 Pla2g2e protein_coding protein_coding MGP_CASTEiJ_T0013989.1 MGP_CASTEiJ_G0012152.1 mouse_genomes_project 4 19577592 19578295 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066296.1 MGP_CASTEiJ_G0027573.1 mouse_genomes_project 4 86370002 86370666 - MGP_CASTEiJ_P0066296 Ifne protein_coding protein_coding MGP_CASTEiJ_T0067452.1 MGP_CASTEiJ_G0027804.1 mouse_genomes_project 4 116397278 116404668 + MGP_CASTEiJ_P0067452 Ebna1bp2 protein_coding protein_coding MGP_CASTEiJ_T0067453.1 MGP_CASTEiJ_G0027804.1 mouse_genomes_project 4 116397306 116402876 + MGP_CASTEiJ_P0067453 Ebna1bp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067454.1 MGP_CASTEiJ_G0027804.1 mouse_genomes_project 4 116397327 116398413 + Ebna1bp2 protein_coding processed_transcript MGP_CASTEiJ_T0067455.1 MGP_CASTEiJ_G0027804.1 mouse_genomes_project 4 116397329 116398144 + Ebna1bp2 protein_coding processed_transcript MGP_CASTEiJ_T0067456.1 MGP_CASTEiJ_G0027804.1 mouse_genomes_project 4 116397639 116401083 + MGP_CASTEiJ_P0067456 Ebna1bp2 protein_coding protein_coding MGP_CASTEiJ_T0067457.1 MGP_CASTEiJ_G0027804.1 mouse_genomes_project 4 116397705 116402509 + Ebna1bp2 protein_coding processed_transcript MGP_CASTEiJ_T0098723.1 MGP_CASTEiJ_G0035654.1 mouse_genomes_project 4 49943850 49944283 + Gm24943 ribozyme ribozyme MGP_CASTEiJ_T0099834.1 MGP_CASTEiJ_G0036747.1 mouse_genomes_project 4 130764414 130764548 - Rnu11 snRNA snRNA MGP_CASTEiJ_T0068528.1 MGP_CASTEiJ_G0028037.1 mouse_genomes_project 4 132679058 132698883 - MGP_CASTEiJ_P0068528 Lin28a protein_coding protein_coding MGP_CASTEiJ_T0068529.1 MGP_CASTEiJ_G0028037.1 mouse_genomes_project 4 132681969 132690159 - MGP_CASTEiJ_P0068529 Lin28a protein_coding protein_coding MGP_CASTEiJ_T0068530.1 MGP_CASTEiJ_G0028037.1 mouse_genomes_project 4 132681975 132687153 - MGP_CASTEiJ_P0068530 Lin28a protein_coding protein_coding MGP_CASTEiJ_T0068531.1 MGP_CASTEiJ_G0028037.1 mouse_genomes_project 4 132683661 132698424 - MGP_CASTEiJ_P0068531 Lin28a protein_coding protein_coding MGP_CASTEiJ_T0066401.1 MGP_CASTEiJ_G0027600.1 mouse_genomes_project 4 94206695 94243147 - MGP_CASTEiJ_P0066401 Cyp2j5 protein_coding protein_coding MGP_CASTEiJ_T0099846.1 MGP_CASTEiJ_G0036759.1 mouse_genomes_project 4 144355234 144355400 - Gm25938 snRNA snRNA MGP_CASTEiJ_T0001356.1 MGP_CASTEiJ_G0001286.1 mouse_genomes_project 4 19293066 19296730 + TEC TEC MGP_CASTEiJ_T0066975.1 MGP_CASTEiJ_G0027708.1 mouse_genomes_project 4 108288002 108375388 - MGP_CASTEiJ_P0066975 Elavl4 protein_coding protein_coding MGP_CASTEiJ_T0066976.1 MGP_CASTEiJ_G0027708.1 mouse_genomes_project 4 108288017 108380694 - MGP_CASTEiJ_P0066976 Elavl4 protein_coding protein_coding MGP_CASTEiJ_T0066977.1 MGP_CASTEiJ_G0027708.1 mouse_genomes_project 4 108288017 108374752 - MGP_CASTEiJ_P0066977 Elavl4 protein_coding protein_coding MGP_CASTEiJ_T0066978.1 MGP_CASTEiJ_G0027708.1 mouse_genomes_project 4 108288017 108435596 - MGP_CASTEiJ_P0066978 Elavl4 protein_coding protein_coding MGP_CASTEiJ_T0066979.1 MGP_CASTEiJ_G0027708.1 mouse_genomes_project 4 108288017 108374752 - MGP_CASTEiJ_P0066979 Elavl4 protein_coding protein_coding MGP_CASTEiJ_T0066980.1 MGP_CASTEiJ_G0027708.1 mouse_genomes_project 4 108288017 108378170 - MGP_CASTEiJ_P0066980 Elavl4 protein_coding protein_coding MGP_CASTEiJ_T0066981.1 MGP_CASTEiJ_G0027708.1 mouse_genomes_project 4 108288017 108375388 - MGP_CASTEiJ_P0066981 Elavl4 protein_coding protein_coding MGP_CASTEiJ_T0066982.1 MGP_CASTEiJ_G0027708.1 mouse_genomes_project 4 108290641 108307232 - Elavl4 protein_coding processed_transcript MGP_CASTEiJ_T0066983.1 MGP_CASTEiJ_G0027708.1 mouse_genomes_project 4 108297367 108374479 - MGP_CASTEiJ_P0066983 Elavl4 protein_coding protein_coding MGP_CASTEiJ_T0066984.1 MGP_CASTEiJ_G0027708.1 mouse_genomes_project 4 108309732 108362067 - Elavl4 protein_coding processed_transcript MGP_CASTEiJ_T0066985.1 MGP_CASTEiJ_G0027708.1 mouse_genomes_project 4 108310761 108375388 - MGP_CASTEiJ_P0066985 Elavl4 protein_coding protein_coding MGP_CASTEiJ_T0066986.1 MGP_CASTEiJ_G0027708.1 mouse_genomes_project 4 108336673 108378814 - MGP_CASTEiJ_P0066986 Elavl4 protein_coding protein_coding MGP_CASTEiJ_T0011234.1 MGP_CASTEiJ_G0009422.1 mouse_genomes_project 4 45562748 45562868 + Gm27668 misc_RNA misc_RNA MGP_CASTEiJ_T0004434.1 MGP_CASTEiJ_G0003858.1 mouse_genomes_project 4 138341056 138346314 - Gm16287 antisense antisense MGP_CASTEiJ_T0066398.1 MGP_CASTEiJ_G0027598.1 mouse_genomes_project 4 94084340 94122733 - MGP_CASTEiJ_P0066398 Cyp2j6 protein_coding protein_coding MGP_CASTEiJ_T0066277.1 MGP_CASTEiJ_G0027558.1 mouse_genomes_project 4 85977827 85978577 - MGP_CASTEiJ_P0066277 Ifnb1 protein_coding protein_coding MGP_CASTEiJ_T0001363.1 MGP_CASTEiJ_G0001293.1 mouse_genomes_project 4 97232722 97237417 + TEC TEC MGP_CASTEiJ_T0069513.1 MGP_CASTEiJ_G0028263.1 mouse_genomes_project 4 149284401 149308840 - MGP_CASTEiJ_P0069513 H6pd protein_coding protein_coding MGP_CASTEiJ_T0069514.1 MGP_CASTEiJ_G0028263.1 mouse_genomes_project 4 149284401 149315695 - MGP_CASTEiJ_P0069514 H6pd protein_coding protein_coding MGP_CASTEiJ_T0069515.1 MGP_CASTEiJ_G0028263.1 mouse_genomes_project 4 149301562 149306978 - MGP_CASTEiJ_P0069515 H6pd protein_coding protein_coding MGP_CASTEiJ_T0069516.1 MGP_CASTEiJ_G0028263.1 mouse_genomes_project 4 149305488 149307003 - H6pd protein_coding processed_transcript MGP_CASTEiJ_T0065936.1 MGP_CASTEiJ_G0027491.1 mouse_genomes_project 4 59356066 59366569 - Alad protein_coding processed_transcript MGP_CASTEiJ_T0065937.1 MGP_CASTEiJ_G0027491.1 mouse_genomes_project 4 59356066 59366606 - MGP_CASTEiJ_P0065937 Alad protein_coding protein_coding MGP_CASTEiJ_T0065938.1 MGP_CASTEiJ_G0027491.1 mouse_genomes_project 4 59356066 59366582 - MGP_CASTEiJ_P0065938 Alad protein_coding protein_coding MGP_CASTEiJ_T0067784.1 MGP_CASTEiJ_G0027892.1 mouse_genomes_project 4 123160676 123168062 + MGP_CASTEiJ_P0067784 Snip1 protein_coding protein_coding MGP_CASTEiJ_T0067785.1 MGP_CASTEiJ_G0027892.1 mouse_genomes_project 4 123160706 123165313 + Snip1 protein_coding processed_transcript MGP_CASTEiJ_T0014072.1 MGP_CASTEiJ_G0012235.1 mouse_genomes_project 4 47400442 47401876 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068902.1 MGP_CASTEiJ_G0028117.1 mouse_genomes_project 4 136908709 136969605 + MGP_CASTEiJ_P0068902 Ece1 protein_coding protein_coding MGP_CASTEiJ_T0068903.1 MGP_CASTEiJ_G0028117.1 mouse_genomes_project 4 136969220 136995224 + MGP_CASTEiJ_P0068903 Ece1 protein_coding protein_coding MGP_CASTEiJ_T0068904.1 MGP_CASTEiJ_G0028117.1 mouse_genomes_project 4 136969432 136983722 + Ece1 protein_coding processed_transcript MGP_CASTEiJ_T0068905.1 MGP_CASTEiJ_G0028117.1 mouse_genomes_project 4 136969476 137025883 + MGP_CASTEiJ_P0068905 Ece1 protein_coding protein_coding MGP_CASTEiJ_T0014155.1 MGP_CASTEiJ_G0012318.1 mouse_genomes_project 4 79928288 79928555 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010302.1 MGP_CASTEiJ_G0008490.1 mouse_genomes_project 4 78270650 78270746 + Gm27452 miRNA miRNA MGP_CASTEiJ_T0099832.1 MGP_CASTEiJ_G0036745.1 mouse_genomes_project 4 127879913 127880053 + Gm24621 snRNA snRNA MGP_CASTEiJ_T0065328.1 MGP_CASTEiJ_G0027348.1 mouse_genomes_project 4 41190372 41198880 + MGP_CASTEiJ_P0065328 Car9 protein_coding protein_coding MGP_CASTEiJ_T0065329.1 MGP_CASTEiJ_G0027348.1 mouse_genomes_project 4 41190391 41198859 + Car9 protein_coding processed_transcript MGP_CASTEiJ_T0065330.1 MGP_CASTEiJ_G0027348.1 mouse_genomes_project 4 41190679 41198091 + MGP_CASTEiJ_P0065330 Car9 protein_coding protein_coding MGP_CASTEiJ_T0065331.1 MGP_CASTEiJ_G0027348.1 mouse_genomes_project 4 41191263 41192364 + Car9 protein_coding processed_transcript MGP_CASTEiJ_T0065332.1 MGP_CASTEiJ_G0027348.1 mouse_genomes_project 4 41191932 41192425 + Car9 protein_coding processed_transcript MGP_CASTEiJ_T0065333.1 MGP_CASTEiJ_G0027348.1 mouse_genomes_project 4 41192326 41197488 + Car9 protein_coding processed_transcript MGP_CASTEiJ_T0065334.1 MGP_CASTEiJ_G0027348.1 mouse_genomes_project 4 41197164 41197975 + Car9 protein_coding processed_transcript MGP_CASTEiJ_T0067858.1 MGP_CASTEiJ_G0027907.1 mouse_genomes_project 4 124505970 124511331 - Adprhl2 protein_coding processed_transcript MGP_CASTEiJ_T0067859.1 MGP_CASTEiJ_G0027907.1 mouse_genomes_project 4 124505970 124511665 - MGP_CASTEiJ_P0067859 Adprhl2 protein_coding protein_coding MGP_CASTEiJ_T0067860.1 MGP_CASTEiJ_G0027907.1 mouse_genomes_project 4 124505975 124511429 - Adprhl2 protein_coding processed_transcript MGP_CASTEiJ_T0067861.1 MGP_CASTEiJ_G0027907.1 mouse_genomes_project 4 124508071 124511323 - Adprhl2 protein_coding processed_transcript MGP_CASTEiJ_T0102309.1 MGP_CASTEiJ_G0039034.1 mouse_genomes_project 4 86071033 86072424 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0013967.1 MGP_CASTEiJ_G0012130.1 mouse_genomes_project 4 12557459 12559576 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069632.1 MGP_CASTEiJ_G0028285.1 mouse_genomes_project 4 151559085 151573156 + Nol9 protein_coding retained_intron MGP_CASTEiJ_T0069633.1 MGP_CASTEiJ_G0028285.1 mouse_genomes_project 4 151559091 151582055 + MGP_CASTEiJ_P0069633 Nol9 protein_coding protein_coding MGP_CASTEiJ_T0069634.1 MGP_CASTEiJ_G0028285.1 mouse_genomes_project 4 151559100 151578420 + Nol9 protein_coding retained_intron MGP_CASTEiJ_T0069635.1 MGP_CASTEiJ_G0028285.1 mouse_genomes_project 4 151559100 151583509 + MGP_CASTEiJ_P0069635 Nol9 protein_coding protein_coding MGP_CASTEiJ_T0069636.1 MGP_CASTEiJ_G0028285.1 mouse_genomes_project 4 151559127 151582073 + MGP_CASTEiJ_P0069636 Nol9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0014310.1 MGP_CASTEiJ_G0012473.1 mouse_genomes_project 4 134743237 134743462 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065156.1 MGP_CASTEiJ_G0027325.1 mouse_genomes_project 4 39421514 39424380 - MGP_CASTEiJ_P0065156 Sigmar1 protein_coding protein_coding MGP_CASTEiJ_T0065157.1 MGP_CASTEiJ_G0027325.1 mouse_genomes_project 4 39421514 39424380 - MGP_CASTEiJ_P0065157 Sigmar1 protein_coding protein_coding MGP_CASTEiJ_T0065158.1 MGP_CASTEiJ_G0027325.1 mouse_genomes_project 4 39422121 39428153 - Sigmar1 protein_coding processed_transcript MGP_CASTEiJ_T0065159.1 MGP_CASTEiJ_G0027325.1 mouse_genomes_project 4 39422526 39438469 - Sigmar1 protein_coding processed_transcript MGP_CASTEiJ_T0065160.1 MGP_CASTEiJ_G0027325.1 mouse_genomes_project 4 39423469 39424207 - Sigmar1 protein_coding retained_intron MGP_CASTEiJ_T0065161.1 MGP_CASTEiJ_G0027325.1 mouse_genomes_project 4 39423601 39424069 - Sigmar1 protein_coding retained_intron MGP_CASTEiJ_T0065162.1 MGP_CASTEiJ_G0027325.1 mouse_genomes_project 4 39423623 39424341 - Sigmar1 protein_coding processed_transcript MGP_CASTEiJ_T0065163.1 MGP_CASTEiJ_G0027325.1 mouse_genomes_project 4 39437897 39439227 - Sigmar1 protein_coding processed_transcript MGP_CASTEiJ_T0014095.1 MGP_CASTEiJ_G0012258.1 mouse_genomes_project 4 53653126 53653508 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099775.1 MGP_CASTEiJ_G0036688.1 mouse_genomes_project 4 28313547 28313651 - Gm25705 snRNA snRNA MGP_CASTEiJ_T0064588.1 MGP_CASTEiJ_G0027192.1 mouse_genomes_project 4 4696818 4786932 - MGP_CASTEiJ_P0064588 Car8 protein_coding protein_coding MGP_CASTEiJ_T0068085.1 MGP_CASTEiJ_G0027955.1 mouse_genomes_project 4 127945695 127975149 - MGP_CASTEiJ_P0068085 Gm10093 protein_coding protein_coding MGP_CASTEiJ_T0068086.1 MGP_CASTEiJ_G0027955.1 mouse_genomes_project 4 127945700 127975104 - MGP_CASTEiJ_P0068086 Gm10093 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068087.1 MGP_CASTEiJ_G0027955.1 mouse_genomes_project 4 127947266 127951906 - Gm10093 protein_coding retained_intron MGP_CASTEiJ_T0068088.1 MGP_CASTEiJ_G0027955.1 mouse_genomes_project 4 127951606 127959012 - Gm10093 protein_coding retained_intron MGP_CASTEiJ_T0068089.1 MGP_CASTEiJ_G0027955.1 mouse_genomes_project 4 127951753 127954425 - Gm10093 protein_coding retained_intron MGP_CASTEiJ_T0068090.1 MGP_CASTEiJ_G0027955.1 mouse_genomes_project 4 127951941 127954383 - Gm10093 protein_coding retained_intron MGP_CASTEiJ_T0068091.1 MGP_CASTEiJ_G0027955.1 mouse_genomes_project 4 127958599 127975127 - Gm10093 protein_coding retained_intron MGP_CASTEiJ_T0066781.1 MGP_CASTEiJ_G0027673.1 mouse_genomes_project 4 105612399 105619531 - MGP_CASTEiJ_P0066781 protein_coding protein_coding MGP_CASTEiJ_T0066782.1 MGP_CASTEiJ_G0027673.1 mouse_genomes_project 4 105613013 105616904 - protein_coding retained_intron MGP_CASTEiJ_T0066783.1 MGP_CASTEiJ_G0027673.1 mouse_genomes_project 4 105613041 105624298 - MGP_CASTEiJ_P0066783 protein_coding unknown_likely_coding MGP_CASTEiJ_T0101063.1 MGP_CASTEiJ_G0037976.1 mouse_genomes_project 4 88581311 88581443 - Gm25244 snoRNA snoRNA MGP_CASTEiJ_T0069145.1 MGP_CASTEiJ_G0028175.1 mouse_genomes_project 4 140806838 140819906 - MGP_CASTEiJ_P0069145 Clcnkb protein_coding protein_coding MGP_CASTEiJ_T0069146.1 MGP_CASTEiJ_G0028175.1 mouse_genomes_project 4 140806838 140807842 - MGP_CASTEiJ_P0069146 Clcnkb protein_coding protein_coding MGP_CASTEiJ_T0069147.1 MGP_CASTEiJ_G0028175.1 mouse_genomes_project 4 140806838 140819906 - MGP_CASTEiJ_P0069147 Clcnkb protein_coding protein_coding MGP_CASTEiJ_T0069148.1 MGP_CASTEiJ_G0028175.1 mouse_genomes_project 4 140806903 140815855 - MGP_CASTEiJ_P0069148 Clcnkb protein_coding unknown_likely_coding MGP_CASTEiJ_T0069149.1 MGP_CASTEiJ_G0028175.1 mouse_genomes_project 4 140818353 140819853 - Clcnkb protein_coding processed_transcript MGP_CASTEiJ_T0068315.1 MGP_CASTEiJ_G0027992.1 mouse_genomes_project 4 130586312 130625381 - MGP_CASTEiJ_P0068315 Oprd1 protein_coding protein_coding MGP_CASTEiJ_T0066108.1 MGP_CASTEiJ_G0027534.1 mouse_genomes_project 4 78573782 78730698 - MGP_CASTEiJ_P0066108 Mpdz protein_coding protein_coding MGP_CASTEiJ_T0066109.1 MGP_CASTEiJ_G0027534.1 mouse_genomes_project 4 78573787 78730700 - MGP_CASTEiJ_P0066109 Mpdz protein_coding protein_coding MGP_CASTEiJ_T0066110.1 MGP_CASTEiJ_G0027534.1 mouse_genomes_project 4 78573787 78632849 - MGP_CASTEiJ_P0066110 Mpdz protein_coding protein_coding MGP_CASTEiJ_T0066111.1 MGP_CASTEiJ_G0027534.1 mouse_genomes_project 4 78574517 78580779 - Mpdz protein_coding retained_intron MGP_CASTEiJ_T0066112.1 MGP_CASTEiJ_G0027534.1 mouse_genomes_project 4 78574620 78592084 - MGP_CASTEiJ_P0066112 Mpdz protein_coding protein_coding MGP_CASTEiJ_T0066113.1 MGP_CASTEiJ_G0027534.1 mouse_genomes_project 4 78574902 78730781 - MGP_CASTEiJ_P0066113 Mpdz protein_coding unknown_likely_coding MGP_CASTEiJ_T0066114.1 MGP_CASTEiJ_G0027534.1 mouse_genomes_project 4 78578233 78579941 - Mpdz protein_coding retained_intron MGP_CASTEiJ_T0066115.1 MGP_CASTEiJ_G0027534.1 mouse_genomes_project 4 78578617 78589115 - MGP_CASTEiJ_P0066115 Mpdz protein_coding protein_coding MGP_CASTEiJ_T0066116.1 MGP_CASTEiJ_G0027534.1 mouse_genomes_project 4 78579818 78583317 - Mpdz protein_coding retained_intron MGP_CASTEiJ_T0066117.1 MGP_CASTEiJ_G0027534.1 mouse_genomes_project 4 78585131 78589332 - Mpdz protein_coding retained_intron MGP_CASTEiJ_T0066118.1 MGP_CASTEiJ_G0027534.1 mouse_genomes_project 4 78589061 78589676 - Mpdz protein_coding retained_intron MGP_CASTEiJ_T0066119.1 MGP_CASTEiJ_G0027534.1 mouse_genomes_project 4 78603305 78616986 - MGP_CASTEiJ_P0066119 Mpdz protein_coding protein_coding MGP_CASTEiJ_T0066120.1 MGP_CASTEiJ_G0027534.1 mouse_genomes_project 4 78616808 78629853 - MGP_CASTEiJ_P0066120 Mpdz protein_coding protein_coding MGP_CASTEiJ_T0066121.1 MGP_CASTEiJ_G0027534.1 mouse_genomes_project 4 78616830 78632807 - MGP_CASTEiJ_P0066121 Mpdz protein_coding protein_coding MGP_CASTEiJ_T0066122.1 MGP_CASTEiJ_G0027534.1 mouse_genomes_project 4 78638018 78653890 - MGP_CASTEiJ_P0066122 Mpdz protein_coding protein_coding MGP_CASTEiJ_T0066123.1 MGP_CASTEiJ_G0027534.1 mouse_genomes_project 4 78702684 78730708 - Mpdz protein_coding retained_intron MGP_CASTEiJ_T0098948.1 MGP_CASTEiJ_G0035872.1 mouse_genomes_project 4 151748210 151748549 + Gm13096 sense_intronic sense_intronic MGP_CASTEiJ_T0069478.1 MGP_CASTEiJ_G0028258.1 mouse_genomes_project 4 148860273 148939966 + MGP_CASTEiJ_P0069478 Clstn1 protein_coding protein_coding MGP_CASTEiJ_T0069479.1 MGP_CASTEiJ_G0028258.1 mouse_genomes_project 4 148860325 148939968 + MGP_CASTEiJ_P0069479 Clstn1 protein_coding protein_coding MGP_CASTEiJ_T0069480.1 MGP_CASTEiJ_G0028258.1 mouse_genomes_project 4 148917854 148922662 + Clstn1 protein_coding retained_intron MGP_CASTEiJ_T0101094.1 MGP_CASTEiJ_G0038007.1 mouse_genomes_project 4 130865851 130866056 - Snora73b snoRNA snoRNA MGP_CASTEiJ_T0102328.1 MGP_CASTEiJ_G0039053.1 mouse_genomes_project 4 120105151 120132456 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0069994.1 MGP_CASTEiJ_G0028342.1 mouse_genomes_project 4 155589888 155592622 + MGP_CASTEiJ_P0069994 Ankrd65 protein_coding protein_coding MGP_CASTEiJ_T0069995.1 MGP_CASTEiJ_G0028342.1 mouse_genomes_project 4 155590621 155600246 + MGP_CASTEiJ_P0069995 Ankrd65 protein_coding protein_coding MGP_CASTEiJ_T0014295.1 MGP_CASTEiJ_G0012458.1 mouse_genomes_project 4 130565276 130565684 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065107.1 MGP_CASTEiJ_G0027313.1 mouse_genomes_project 4 38992814 39039383 + MGP_CASTEiJ_P0065107 Ubap1 protein_coding protein_coding MGP_CASTEiJ_T0065108.1 MGP_CASTEiJ_G0027313.1 mouse_genomes_project 4 38992814 39038624 + MGP_CASTEiJ_P0065108 Ubap1 protein_coding protein_coding MGP_CASTEiJ_T0065109.1 MGP_CASTEiJ_G0027313.1 mouse_genomes_project 4 38992866 39018985 + Ubap1 protein_coding processed_transcript MGP_CASTEiJ_T0065110.1 MGP_CASTEiJ_G0027313.1 mouse_genomes_project 4 39018947 39028299 + Ubap1 protein_coding processed_transcript MGP_CASTEiJ_T0065111.1 MGP_CASTEiJ_G0027313.1 mouse_genomes_project 4 39019424 39037550 + MGP_CASTEiJ_P0065111 Ubap1 protein_coding protein_coding MGP_CASTEiJ_T0068808.1 MGP_CASTEiJ_G0028097.1 mouse_genomes_project 4 135389769 135479234 + MGP_CASTEiJ_P0068808 Luzp1 protein_coding protein_coding MGP_CASTEiJ_T0068809.1 MGP_CASTEiJ_G0028097.1 mouse_genomes_project 4 135389769 135479230 + MGP_CASTEiJ_P0068809 Luzp1 protein_coding protein_coding MGP_CASTEiJ_T0068810.1 MGP_CASTEiJ_G0028097.1 mouse_genomes_project 4 135389811 135447907 + Luzp1 protein_coding retained_intron MGP_CASTEiJ_T0068811.1 MGP_CASTEiJ_G0028097.1 mouse_genomes_project 4 135389834 135478881 + MGP_CASTEiJ_P0068811 Luzp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068812.1 MGP_CASTEiJ_G0028097.1 mouse_genomes_project 4 135389858 135470581 + MGP_CASTEiJ_P0068812 Luzp1 protein_coding protein_coding MGP_CASTEiJ_T0068813.1 MGP_CASTEiJ_G0028097.1 mouse_genomes_project 4 135447590 135476309 + MGP_CASTEiJ_P0068813 Luzp1 protein_coding protein_coding MGP_CASTEiJ_T0068814.1 MGP_CASTEiJ_G0028097.1 mouse_genomes_project 4 135470267 135479233 + MGP_CASTEiJ_P0068814 Luzp1 protein_coding protein_coding MGP_CASTEiJ_T0068815.1 MGP_CASTEiJ_G0028097.1 mouse_genomes_project 4 135475179 135484697 + MGP_CASTEiJ_P0068815 Luzp1 protein_coding protein_coding MGP_CASTEiJ_T0064946.1 MGP_CASTEiJ_G0027272.1 mouse_genomes_project 4 30381003 30416036 + MGP_CASTEiJ_P0064946 Gabrr1 protein_coding protein_coding MGP_CASTEiJ_T0064947.1 MGP_CASTEiJ_G0027272.1 mouse_genomes_project 4 30381137 30415326 + MGP_CASTEiJ_P0064947 Gabrr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066153.1 MGP_CASTEiJ_G0027540.1 mouse_genomes_project 4 80720844 80761901 + MGP_CASTEiJ_P0066153 Snapc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066154.1 MGP_CASTEiJ_G0027540.1 mouse_genomes_project 4 80720844 80750608 + MGP_CASTEiJ_P0066154 Snapc3 protein_coding protein_coding MGP_CASTEiJ_T0066155.1 MGP_CASTEiJ_G0027540.1 mouse_genomes_project 4 80720851 80745771 + MGP_CASTEiJ_P0066155 Snapc3 protein_coding protein_coding MGP_CASTEiJ_T0066156.1 MGP_CASTEiJ_G0027540.1 mouse_genomes_project 4 80720864 80751297 + MGP_CASTEiJ_P0066156 Snapc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066157.1 MGP_CASTEiJ_G0027540.1 mouse_genomes_project 4 80720864 80767222 + MGP_CASTEiJ_P0066157 Snapc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066158.1 MGP_CASTEiJ_G0027540.1 mouse_genomes_project 4 80720869 80767674 + MGP_CASTEiJ_P0066158 Snapc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066159.1 MGP_CASTEiJ_G0027540.1 mouse_genomes_project 4 80751069 80767169 + Snapc3 protein_coding processed_transcript MGP_CASTEiJ_T0066160.1 MGP_CASTEiJ_G0027540.1 mouse_genomes_project 4 80751217 80766131 + Snapc3 protein_coding processed_transcript MGP_CASTEiJ_T0066168.1 MGP_CASTEiJ_G0027540.1 mouse_genomes_project 4 80764014 80767214 + Snapc3 protein_coding retained_intron MGP_CASTEiJ_T0065641.1 MGP_CASTEiJ_G0027412.1 mouse_genomes_project 4 46263748 46429785 + MGP_CASTEiJ_P0065641 protein_coding protein_coding MGP_CASTEiJ_T0065642.1 MGP_CASTEiJ_G0027412.1 mouse_genomes_project 4 46263762 46270167 + protein_coding processed_transcript MGP_CASTEiJ_T0065643.1 MGP_CASTEiJ_G0027412.1 mouse_genomes_project 4 46263772 46425188 + MGP_CASTEiJ_P0065643 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065644.1 MGP_CASTEiJ_G0027412.1 mouse_genomes_project 4 46378087 46392669 + protein_coding processed_transcript MGP_CASTEiJ_T0098600.1 MGP_CASTEiJ_G0035531.1 mouse_genomes_project 4 57385037 57385121 + Gm26400 rRNA rRNA MGP_CASTEiJ_T0067758.1 MGP_CASTEiJ_G0027886.1 mouse_genomes_project 4 122925323 122932263 - MGP_CASTEiJ_P0067758 Maneal protein_coding protein_coding MGP_CASTEiJ_T0068855.1 MGP_CASTEiJ_G0028113.1 mouse_genomes_project 4 136581707 136584191 - MGP_CASTEiJ_P0068855 Ldlrad2 protein_coding protein_coding MGP_CASTEiJ_T0014016.1 MGP_CASTEiJ_G0012179.1 mouse_genomes_project 4 26504166 26504674 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067709.1 MGP_CASTEiJ_G0027871.1 mouse_genomes_project 4 121700980 121708178 - MGP_CASTEiJ_P0067709 Ndufs5 protein_coding protein_coding MGP_CASTEiJ_T0070018.1 MGP_CASTEiJ_G0028346.1 mouse_genomes_project 4 155650232 155652676 + MGP_CASTEiJ_P0070018 Mxra8 protein_coding protein_coding MGP_CASTEiJ_T0070019.1 MGP_CASTEiJ_G0028346.1 mouse_genomes_project 4 155650278 155655534 + MGP_CASTEiJ_P0070019 Mxra8 protein_coding protein_coding MGP_CASTEiJ_T0070020.1 MGP_CASTEiJ_G0028346.1 mouse_genomes_project 4 155650382 155651831 + Mxra8 protein_coding retained_intron MGP_CASTEiJ_T0070021.1 MGP_CASTEiJ_G0028346.1 mouse_genomes_project 4 155653884 155654910 + Mxra8 protein_coding retained_intron MGP_CASTEiJ_T0070022.1 MGP_CASTEiJ_G0028346.1 mouse_genomes_project 4 155653905 155655023 + Mxra8 protein_coding retained_intron MGP_CASTEiJ_T0070023.1 MGP_CASTEiJ_G0028346.1 mouse_genomes_project 4 155654356 155655211 + Mxra8 protein_coding processed_transcript MGP_CASTEiJ_T0068669.1 MGP_CASTEiJ_G0028068.1 mouse_genomes_project 4 133901734 133963504 + MGP_CASTEiJ_P0068669 Runx3 protein_coding protein_coding MGP_CASTEiJ_T0068670.1 MGP_CASTEiJ_G0028068.1 mouse_genomes_project 4 133902184 133997652 + MGP_CASTEiJ_P0068670 Runx3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0068671.1 MGP_CASTEiJ_G0028068.1 mouse_genomes_project 4 133933746 133961738 + MGP_CASTEiJ_P0068671 Runx3 protein_coding protein_coding MGP_CASTEiJ_T0068672.1 MGP_CASTEiJ_G0028068.1 mouse_genomes_project 4 133936637 133939300 + Runx3 protein_coding retained_intron MGP_CASTEiJ_T0068673.1 MGP_CASTEiJ_G0028068.1 mouse_genomes_project 4 133936859 133939062 + Runx3 protein_coding processed_transcript MGP_CASTEiJ_T0068674.1 MGP_CASTEiJ_G0028068.1 mouse_genomes_project 4 133937204 133939117 + Runx3 protein_coding processed_transcript MGP_CASTEiJ_T0068675.1 MGP_CASTEiJ_G0028068.1 mouse_genomes_project 4 133938127 133939033 + Runx3 protein_coding processed_transcript MGP_CASTEiJ_T0014115.1 MGP_CASTEiJ_G0012278.1 mouse_genomes_project 4 64114556 64114925 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066483.1 MGP_CASTEiJ_G0027617.1 mouse_genomes_project 4 97484478 97550222 - MGP_CASTEiJ_P0066483 Itgb3bp protein_coding protein_coding MGP_CASTEiJ_T0066484.1 MGP_CASTEiJ_G0027617.1 mouse_genomes_project 4 97484978 97620298 - Itgb3bp protein_coding processed_transcript MGP_CASTEiJ_T0066485.1 MGP_CASTEiJ_G0027617.1 mouse_genomes_project 4 97486407 97550128 - Itgb3bp protein_coding processed_transcript MGP_CASTEiJ_T0066486.1 MGP_CASTEiJ_G0027617.1 mouse_genomes_project 4 97486560 97550189 - MGP_CASTEiJ_P0066486 Itgb3bp protein_coding unknown_likely_coding MGP_CASTEiJ_T0066487.1 MGP_CASTEiJ_G0027617.1 mouse_genomes_project 4 97491083 97550170 - Itgb3bp protein_coding processed_transcript MGP_CASTEiJ_T0068602.1 MGP_CASTEiJ_G0028052.1 mouse_genomes_project 4 133027294 133041637 + MGP_CASTEiJ_P0068602 Trim63 protein_coding protein_coding MGP_CASTEiJ_T0068603.1 MGP_CASTEiJ_G0028052.1 mouse_genomes_project 4 133027296 133041615 + MGP_CASTEiJ_P0068603 Trim63 protein_coding protein_coding MGP_CASTEiJ_T0068604.1 MGP_CASTEiJ_G0028052.1 mouse_genomes_project 4 133027386 133029542 + Trim63 protein_coding retained_intron MGP_CASTEiJ_T0068605.1 MGP_CASTEiJ_G0028052.1 mouse_genomes_project 4 133032150 133041634 + Trim63 protein_coding processed_transcript MGP_CASTEiJ_T0065912.1 MGP_CASTEiJ_G0027485.1 mouse_genomes_project 4 59225951 59252203 - MGP_CASTEiJ_P0065912 Cdc26 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0065914.1 MGP_CASTEiJ_G0027485.1 mouse_genomes_project 4 59236702 59252203 - MGP_CASTEiJ_P0065914 Cdc26 protein_coding protein_coding MGP_CASTEiJ_T0065915.1 MGP_CASTEiJ_G0027485.1 mouse_genomes_project 4 59236753 59252186 - MGP_CASTEiJ_P0065915 Cdc26 protein_coding protein_coding MGP_CASTEiJ_T0065916.1 MGP_CASTEiJ_G0027485.1 mouse_genomes_project 4 59244276 59248968 - Cdc26 protein_coding retained_intron MGP_CASTEiJ_T0099824.1 MGP_CASTEiJ_G0036737.1 mouse_genomes_project 4 117397007 117397114 + Rnu6-ps2 snRNA snRNA MGP_CASTEiJ_T0066579.1 MGP_CASTEiJ_G0027635.1 mouse_genomes_project 4 100781604 100784871 - MGP_CASTEiJ_P0066579 Insl5 protein_coding protein_coding MGP_CASTEiJ_T0066580.1 MGP_CASTEiJ_G0027635.1 mouse_genomes_project 4 100781844 100784971 - MGP_CASTEiJ_P0066580 Insl5 protein_coding protein_coding MGP_CASTEiJ_T0067963.1 MGP_CASTEiJ_G0027932.1 mouse_genomes_project 4 126927548 126958741 - MGP_CASTEiJ_P0067963 Zscan20 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067964.1 MGP_CASTEiJ_G0027932.1 mouse_genomes_project 4 126927548 126958741 - MGP_CASTEiJ_P0067964 Zscan20 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067965.1 MGP_CASTEiJ_G0027932.1 mouse_genomes_project 4 126929185 126935604 - Zscan20 protein_coding processed_transcript MGP_CASTEiJ_T0067966.1 MGP_CASTEiJ_G0027932.1 mouse_genomes_project 4 126929193 126958726 - MGP_CASTEiJ_P0067966 Zscan20 protein_coding protein_coding MGP_CASTEiJ_T0067967.1 MGP_CASTEiJ_G0027932.1 mouse_genomes_project 4 126931021 126958670 - MGP_CASTEiJ_P0067967 Zscan20 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067968.1 MGP_CASTEiJ_G0027932.1 mouse_genomes_project 4 126947050 126958662 - Zscan20 protein_coding retained_intron MGP_CASTEiJ_T0067969.1 MGP_CASTEiJ_G0027932.1 mouse_genomes_project 4 126953002 126958623 - MGP_CASTEiJ_P0067969 Zscan20 protein_coding protein_coding MGP_CASTEiJ_T0067970.1 MGP_CASTEiJ_G0027932.1 mouse_genomes_project 4 126953036 126958609 - MGP_CASTEiJ_P0067970 Zscan20 protein_coding protein_coding MGP_CASTEiJ_T0007708.1 MGP_CASTEiJ_G0006320.1 mouse_genomes_project 4 97279216 97282757 + Gm12690 lincRNA lincRNA MGP_CASTEiJ_T0007838.1 MGP_CASTEiJ_G0006417.1 mouse_genomes_project 4 155566257 155572457 + Gm26840 lincRNA lincRNA MGP_CASTEiJ_T0101079.1 MGP_CASTEiJ_G0037992.1 mouse_genomes_project 4 120551429 120551559 - Gm26162 snoRNA snoRNA MGP_CASTEiJ_T0013980.1 MGP_CASTEiJ_G0012143.1 mouse_genomes_project 4 16056203 16057051 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014236.1 MGP_CASTEiJ_G0012399.1 mouse_genomes_project 4 109871771 109872817 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014068.1 MGP_CASTEiJ_G0012231.1 mouse_genomes_project 4 46762928 46763265 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065965.1 MGP_CASTEiJ_G0027496.1 mouse_genomes_project 4 60020808 60031766 - MGP_CASTEiJ_P0065965 Ambp protein_coding protein_coding MGP_CASTEiJ_T0065966.1 MGP_CASTEiJ_G0027496.1 mouse_genomes_project 4 60030257 60032386 - MGP_CASTEiJ_P0065966 Ambp protein_coding protein_coding MGP_CASTEiJ_T0010331.1 MGP_CASTEiJ_G0008519.1 mouse_genomes_project 4 131806403 131806465 + Mir7017 miRNA miRNA MGP_CASTEiJ_T0101097.1 MGP_CASTEiJ_G0038010.1 mouse_genomes_project 4 135976458 135976587 + Gm23834 snoRNA snoRNA MGP_CASTEiJ_T0007605.1 MGP_CASTEiJ_G0006232.1 mouse_genomes_project 4 4121079 4134170 + 8430436N08Rik lincRNA lincRNA MGP_CASTEiJ_T0099819.1 MGP_CASTEiJ_G0036732.1 mouse_genomes_project 4 114568171 114568275 + Gm26355 snRNA snRNA MGP_CASTEiJ_T0066488.1 MGP_CASTEiJ_G0027618.1 mouse_genomes_project 4 97550233 97552616 + MGP_CASTEiJ_P0066488 Efcab7 protein_coding protein_coding MGP_CASTEiJ_T0066489.1 MGP_CASTEiJ_G0027618.1 mouse_genomes_project 4 97550256 97603230 + MGP_CASTEiJ_P0066489 Efcab7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066490.1 MGP_CASTEiJ_G0027618.1 mouse_genomes_project 4 97550475 97552616 + MGP_CASTEiJ_P0066490 Efcab7 protein_coding protein_coding MGP_CASTEiJ_T0066491.1 MGP_CASTEiJ_G0027618.1 mouse_genomes_project 4 97550535 97552616 + MGP_CASTEiJ_P0066491 Efcab7 protein_coding protein_coding MGP_CASTEiJ_T0066492.1 MGP_CASTEiJ_G0027618.1 mouse_genomes_project 4 97552429 97603230 + MGP_CASTEiJ_P0066492 Efcab7 protein_coding protein_coding MGP_CASTEiJ_T0066493.1 MGP_CASTEiJ_G0027618.1 mouse_genomes_project 4 97600201 97603408 + MGP_CASTEiJ_P0066493 Efcab7 protein_coding protein_coding MGP_CASTEiJ_T0001377.1 MGP_CASTEiJ_G0001306.1 mouse_genomes_project 4 149380929 149383201 + TEC TEC MGP_CASTEiJ_T0010320.1 MGP_CASTEiJ_G0008508.1 mouse_genomes_project 4 118934035 118934099 - Mir7015 miRNA miRNA MGP_CASTEiJ_T0014107.1 MGP_CASTEiJ_G0012270.1 mouse_genomes_project 4 59527966 59556017 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014111.1 MGP_CASTEiJ_G0012274.1 mouse_genomes_project 4 61815942 61817156 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014334.1 MGP_CASTEiJ_G0012497.1 mouse_genomes_project 4 148765358 148765777 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068963.1 MGP_CASTEiJ_G0028130.1 mouse_genomes_project 4 137850409 137873887 + MGP_CASTEiJ_P0068963 Pla2g2c protein_coding protein_coding MGP_CASTEiJ_T0068964.1 MGP_CASTEiJ_G0028130.1 mouse_genomes_project 4 137850941 137871448 + MGP_CASTEiJ_P0068964 Pla2g2c protein_coding protein_coding MGP_CASTEiJ_T0068965.1 MGP_CASTEiJ_G0028130.1 mouse_genomes_project 4 137850941 137872329 + MGP_CASTEiJ_P0068965 Pla2g2c protein_coding protein_coding MGP_CASTEiJ_T0014147.1 MGP_CASTEiJ_G0012310.1 mouse_genomes_project 4 75954051 75955328 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017324.1 MGP_CASTEiJ_G0014877.1 mouse_genomes_project 4 93574167 93582838 - 9530080O11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017325.1 MGP_CASTEiJ_G0014877.1 mouse_genomes_project 4 93574702 93582218 - 9530080O11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0014023.1 MGP_CASTEiJ_G0012186.1 mouse_genomes_project 4 29871804 29871964 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069788.1 MGP_CASTEiJ_G0028307.1 mouse_genomes_project 4 153819867 153833314 + MGP_CASTEiJ_P0069788 Wrap73 protein_coding protein_coding MGP_CASTEiJ_T0069789.1 MGP_CASTEiJ_G0028307.1 mouse_genomes_project 4 153819904 153833314 + Wrap73 protein_coding processed_transcript MGP_CASTEiJ_T0069790.1 MGP_CASTEiJ_G0028307.1 mouse_genomes_project 4 153828460 153831807 + MGP_CASTEiJ_P0069790 Wrap73 protein_coding protein_coding MGP_CASTEiJ_T0069791.1 MGP_CASTEiJ_G0028307.1 mouse_genomes_project 4 153831741 153848992 + Wrap73 protein_coding processed_transcript MGP_CASTEiJ_T0069595.1 MGP_CASTEiJ_G0028278.1 mouse_genomes_project 4 150522550 150524430 + MGP_CASTEiJ_P0069595 Gm13090 protein_coding protein_coding MGP_CASTEiJ_T0014083.1 MGP_CASTEiJ_G0012246.1 mouse_genomes_project 4 51507398 51507848 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007719.1 MGP_CASTEiJ_G0006329.1 mouse_genomes_project 4 101148415 101256216 + Gm12718 lincRNA lincRNA MGP_CASTEiJ_T0007720.1 MGP_CASTEiJ_G0006329.1 mouse_genomes_project 4 101148436 101256198 + Gm12718 lincRNA lincRNA MGP_CASTEiJ_T0014235.1 MGP_CASTEiJ_G0012398.1 mouse_genomes_project 4 109386308 109387358 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101038.1 MGP_CASTEiJ_G0037951.1 mouse_genomes_project 4 45894226 45894369 + Gm22670 snoRNA snoRNA MGP_CASTEiJ_T0067049.1 MGP_CASTEiJ_G0027725.1 mouse_genomes_project 4 112645737 112675550 - MGP_CASTEiJ_P0067049 protein_coding protein_coding MGP_CASTEiJ_T0067050.1 MGP_CASTEiJ_G0027725.1 mouse_genomes_project 4 112650860 112675458 - MGP_CASTEiJ_P0067050 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067051.1 MGP_CASTEiJ_G0027725.1 mouse_genomes_project 4 112656799 112675381 - MGP_CASTEiJ_P0067051 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067052.1 MGP_CASTEiJ_G0027725.1 mouse_genomes_project 4 112673129 112675458 - protein_coding processed_transcript MGP_CASTEiJ_T0014109.1 MGP_CASTEiJ_G0012272.1 mouse_genomes_project 4 59806835 59807499 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068131.1 MGP_CASTEiJ_G0027961.1 mouse_genomes_project 4 128056993 128062284 - MGP_CASTEiJ_P0068131 Iqcc protein_coding unknown_likely_coding MGP_CASTEiJ_T0068132.1 MGP_CASTEiJ_G0027961.1 mouse_genomes_project 4 128056993 128062284 - MGP_CASTEiJ_P0068132 Iqcc protein_coding unknown_likely_coding MGP_CASTEiJ_T0068133.1 MGP_CASTEiJ_G0027961.1 mouse_genomes_project 4 128058326 128062296 - MGP_CASTEiJ_P0068133 Iqcc protein_coding protein_coding MGP_CASTEiJ_T0068134.1 MGP_CASTEiJ_G0027961.1 mouse_genomes_project 4 128058954 128060229 - Iqcc protein_coding processed_transcript MGP_CASTEiJ_T0068135.1 MGP_CASTEiJ_G0027961.1 mouse_genomes_project 4 128060537 128062273 - Iqcc protein_coding retained_intron MGP_CASTEiJ_T0068136.1 MGP_CASTEiJ_G0027961.1 mouse_genomes_project 4 128061296 128062293 - MGP_CASTEiJ_P0068136 Iqcc protein_coding protein_coding MGP_CASTEiJ_T0068137.1 MGP_CASTEiJ_G0027961.1 mouse_genomes_project 4 128061440 128062277 - Iqcc protein_coding processed_transcript MGP_CASTEiJ_T0004467.1 MGP_CASTEiJ_G0003882.1 mouse_genomes_project 4 148743464 148748371 + antisense antisense MGP_CASTEiJ_T0068314.1 MGP_CASTEiJ_G0027991.1 mouse_genomes_project 4 130544203 130546481 + MGP_CASTEiJ_P0068314 Gm10300 protein_coding protein_coding MGP_CASTEiJ_T0011241.1 MGP_CASTEiJ_G0009429.1 mouse_genomes_project 4 83306954 83307231 + Gm26069 misc_RNA misc_RNA MGP_CASTEiJ_T0004469.1 MGP_CASTEiJ_G0003884.1 mouse_genomes_project 4 149051882 149052788 + antisense antisense MGP_CASTEiJ_T0004470.1 MGP_CASTEiJ_G0003884.1 mouse_genomes_project 4 149051882 149052913 + antisense antisense MGP_CASTEiJ_T0066784.1 MGP_CASTEiJ_G0027674.1 mouse_genomes_project 4 105754106 105825520 + MGP_CASTEiJ_P0066784 Lrp8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0066785.1 MGP_CASTEiJ_G0027674.1 mouse_genomes_project 4 105754122 105824169 + MGP_CASTEiJ_P0066785 Lrp8 protein_coding protein_coding MGP_CASTEiJ_T0066786.1 MGP_CASTEiJ_G0027674.1 mouse_genomes_project 4 105754159 105825252 + MGP_CASTEiJ_P0066786 Lrp8 protein_coding protein_coding MGP_CASTEiJ_T0066787.1 MGP_CASTEiJ_G0027674.1 mouse_genomes_project 4 105754258 105824169 + MGP_CASTEiJ_P0066787 Lrp8 protein_coding protein_coding MGP_CASTEiJ_T0066788.1 MGP_CASTEiJ_G0027674.1 mouse_genomes_project 4 105754258 105823733 + MGP_CASTEiJ_P0066788 Lrp8 protein_coding protein_coding MGP_CASTEiJ_T0066789.1 MGP_CASTEiJ_G0027674.1 mouse_genomes_project 4 105754739 105801747 + Lrp8 protein_coding processed_transcript MGP_CASTEiJ_T0066790.1 MGP_CASTEiJ_G0027674.1 mouse_genomes_project 4 105755148 105824169 + Lrp8 protein_coding processed_transcript MGP_CASTEiJ_T0066791.1 MGP_CASTEiJ_G0027674.1 mouse_genomes_project 4 105775078 105824169 + Lrp8 protein_coding processed_transcript MGP_CASTEiJ_T0066792.1 MGP_CASTEiJ_G0027674.1 mouse_genomes_project 4 105780316 105786531 + Lrp8 protein_coding retained_intron MGP_CASTEiJ_T0066793.1 MGP_CASTEiJ_G0027674.1 mouse_genomes_project 4 105780336 105828211 + MGP_CASTEiJ_P0066793 Lrp8 protein_coding protein_coding MGP_CASTEiJ_T0066794.1 MGP_CASTEiJ_G0027674.1 mouse_genomes_project 4 105796517 105798629 + Lrp8 protein_coding retained_intron MGP_CASTEiJ_T0066795.1 MGP_CASTEiJ_G0027674.1 mouse_genomes_project 4 105800502 105807597 + Lrp8 protein_coding processed_transcript MGP_CASTEiJ_T0098599.1 MGP_CASTEiJ_G0035530.1 mouse_genomes_project 4 52067338 52067457 + n-R5s185 rRNA rRNA MGP_CASTEiJ_T0014297.1 MGP_CASTEiJ_G0012460.1 mouse_genomes_project 4 131351013 131351295 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065407.1 MGP_CASTEiJ_G0027366.1 mouse_genomes_project 4 41596225 41667576 + Reck protein_coding processed_transcript MGP_CASTEiJ_T0065408.1 MGP_CASTEiJ_G0027366.1 mouse_genomes_project 4 41596225 41667637 + MGP_CASTEiJ_P0065408 Reck protein_coding protein_coding MGP_CASTEiJ_T0065409.1 MGP_CASTEiJ_G0027366.1 mouse_genomes_project 4 41663197 41665213 + Reck protein_coding processed_transcript MGP_CASTEiJ_T0014135.1 MGP_CASTEiJ_G0012298.1 mouse_genomes_project 4 72216209 72217590 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098605.1 MGP_CASTEiJ_G0035536.1 mouse_genomes_project 4 122889275 122889394 + n-R5s192 rRNA rRNA MGP_CASTEiJ_T0101040.1 MGP_CASTEiJ_G0037953.1 mouse_genomes_project 4 48384520 48384652 + Gm25485 snoRNA snoRNA MGP_CASTEiJ_T0068208.1 MGP_CASTEiJ_G0027971.1 mouse_genomes_project 4 128607537 128633287 + MGP_CASTEiJ_P0068208 Pef1 protein_coding protein_coding MGP_CASTEiJ_T0068209.1 MGP_CASTEiJ_G0027971.1 mouse_genomes_project 4 128612601 128633286 + MGP_CASTEiJ_P0068209 Pef1 protein_coding protein_coding MGP_CASTEiJ_T0007771.1 MGP_CASTEiJ_G0006366.1 mouse_genomes_project 4 128381609 128384541 + E330017L17Rik lincRNA lincRNA MGP_CASTEiJ_T0007772.1 MGP_CASTEiJ_G0006366.1 mouse_genomes_project 4 128381619 128384406 + E330017L17Rik lincRNA lincRNA MGP_CASTEiJ_T0007773.1 MGP_CASTEiJ_G0006366.1 mouse_genomes_project 4 128381651 128384160 + E330017L17Rik lincRNA lincRNA MGP_CASTEiJ_T0007774.1 MGP_CASTEiJ_G0006366.1 mouse_genomes_project 4 128381826 128394640 + E330017L17Rik lincRNA lincRNA MGP_CASTEiJ_T0102322.1 MGP_CASTEiJ_G0039047.1 mouse_genomes_project 4 113108032 113109672 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0014139.1 MGP_CASTEiJ_G0012302.1 mouse_genomes_project 4 73001311 73002207 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014332.1 MGP_CASTEiJ_G0012495.1 mouse_genomes_project 4 147748220 147749041 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068921.1 MGP_CASTEiJ_G0028119.1 mouse_genomes_project 4 137274908 137306659 + MGP_CASTEiJ_P0068921 Hp1bp3 protein_coding protein_coding MGP_CASTEiJ_T0068922.1 MGP_CASTEiJ_G0028119.1 mouse_genomes_project 4 137275231 137280340 + Hp1bp3 protein_coding processed_transcript MGP_CASTEiJ_T0068923.1 MGP_CASTEiJ_G0028119.1 mouse_genomes_project 4 137275250 137306662 + MGP_CASTEiJ_P0068923 Hp1bp3 protein_coding protein_coding MGP_CASTEiJ_T0068924.1 MGP_CASTEiJ_G0028119.1 mouse_genomes_project 4 137275257 137286917 + MGP_CASTEiJ_P0068924 Hp1bp3 protein_coding protein_coding MGP_CASTEiJ_T0068925.1 MGP_CASTEiJ_G0028119.1 mouse_genomes_project 4 137275258 137305120 + MGP_CASTEiJ_P0068925 Hp1bp3 protein_coding protein_coding MGP_CASTEiJ_T0068926.1 MGP_CASTEiJ_G0028119.1 mouse_genomes_project 4 137275265 137289616 + MGP_CASTEiJ_P0068926 Hp1bp3 protein_coding protein_coding MGP_CASTEiJ_T0068927.1 MGP_CASTEiJ_G0028119.1 mouse_genomes_project 4 137275266 137306659 + MGP_CASTEiJ_P0068927 Hp1bp3 protein_coding protein_coding MGP_CASTEiJ_T0068928.1 MGP_CASTEiJ_G0028119.1 mouse_genomes_project 4 137275758 137290587 + MGP_CASTEiJ_P0068928 Hp1bp3 protein_coding protein_coding MGP_CASTEiJ_T0068929.1 MGP_CASTEiJ_G0028119.1 mouse_genomes_project 4 137275930 137290574 + Hp1bp3 protein_coding retained_intron MGP_CASTEiJ_T0068930.1 MGP_CASTEiJ_G0028119.1 mouse_genomes_project 4 137275956 137282217 + MGP_CASTEiJ_P0068930 Hp1bp3 protein_coding protein_coding MGP_CASTEiJ_T0068931.1 MGP_CASTEiJ_G0028119.1 mouse_genomes_project 4 137289423 137302705 + MGP_CASTEiJ_P0068931 Hp1bp3 protein_coding protein_coding MGP_CASTEiJ_T0068932.1 MGP_CASTEiJ_G0028119.1 mouse_genomes_project 4 137290486 137295275 + Hp1bp3 protein_coding processed_transcript MGP_CASTEiJ_T0004416.1 MGP_CASTEiJ_G0003843.1 mouse_genomes_project 4 129200576 129202496 - Gm26716 antisense antisense MGP_CASTEiJ_T0004358.1 MGP_CASTEiJ_G0003797.1 mouse_genomes_project 4 96437444 96443083 + Kank4os antisense antisense MGP_CASTEiJ_T0066903.1 MGP_CASTEiJ_G0027696.1 mouse_genomes_project 4 106880546 106882169 + MGP_CASTEiJ_P0066903 Kti12 protein_coding protein_coding MGP_CASTEiJ_T0102318.1 MGP_CASTEiJ_G0039043.1 mouse_genomes_project 4 110288198 110289265 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0007740.1 MGP_CASTEiJ_G0006344.1 mouse_genomes_project 4 116816627 116831048 - Gm12865 lincRNA lincRNA MGP_CASTEiJ_T0067270.1 MGP_CASTEiJ_G0027770.1 mouse_genomes_project 4 114657699 114668245 + MGP_CASTEiJ_P0067270 Hectd3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067271.1 MGP_CASTEiJ_G0027770.1 mouse_genomes_project 4 114661483 114663263 + Hectd3 protein_coding retained_intron MGP_CASTEiJ_T0067272.1 MGP_CASTEiJ_G0027770.1 mouse_genomes_project 4 114665808 114666411 + Hectd3 protein_coding retained_intron MGP_CASTEiJ_T0098604.1 MGP_CASTEiJ_G0035535.1 mouse_genomes_project 4 109499744 109499853 - n-R5s191 rRNA rRNA MGP_CASTEiJ_T0014059.1 MGP_CASTEiJ_G0012222.1 mouse_genomes_project 4 42951020 42951383 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0013956.1 MGP_CASTEiJ_G0012119.1 mouse_genomes_project 4 8029684 8030100 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0064956.1 MGP_CASTEiJ_G0027276.1 mouse_genomes_project 4 30580532 30785303 + MGP_CASTEiJ_P0064956 Rngtt protein_coding protein_coding MGP_CASTEiJ_T0064957.1 MGP_CASTEiJ_G0027276.1 mouse_genomes_project 4 30580549 30783603 + MGP_CASTEiJ_P0064957 Rngtt protein_coding protein_coding MGP_CASTEiJ_T0064958.1 MGP_CASTEiJ_G0027276.1 mouse_genomes_project 4 30592461 30596268 + Rngtt protein_coding processed_transcript MGP_CASTEiJ_T0064959.1 MGP_CASTEiJ_G0027276.1 mouse_genomes_project 4 30595122 30609456 + Rngtt protein_coding processed_transcript MGP_CASTEiJ_T0064960.1 MGP_CASTEiJ_G0027276.1 mouse_genomes_project 4 30601222 30628726 + Rngtt protein_coding processed_transcript MGP_CASTEiJ_T0065152.1 MGP_CASTEiJ_G0027324.1 mouse_genomes_project 4 39405219 39412348 - MGP_CASTEiJ_P0065152 Arid3c protein_coding protein_coding MGP_CASTEiJ_T0065153.1 MGP_CASTEiJ_G0027324.1 mouse_genomes_project 4 39405522 39411675 - MGP_CASTEiJ_P0065153 Arid3c protein_coding protein_coding MGP_CASTEiJ_T0065154.1 MGP_CASTEiJ_G0027324.1 mouse_genomes_project 4 39405522 39411675 - MGP_CASTEiJ_P0065154 Arid3c protein_coding protein_coding MGP_CASTEiJ_T0065155.1 MGP_CASTEiJ_G0027324.1 mouse_genomes_project 4 39411314 39412348 - MGP_CASTEiJ_P0065155 Arid3c protein_coding protein_coding MGP_CASTEiJ_T0069550.1 MGP_CASTEiJ_G0028270.1 mouse_genomes_project 4 150007608 150032431 - MGP_CASTEiJ_P0069550 Slc45a1 protein_coding protein_coding MGP_CASTEiJ_T0069551.1 MGP_CASTEiJ_G0028270.1 mouse_genomes_project 4 150008430 150024895 - MGP_CASTEiJ_P0069551 Slc45a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0069552.1 MGP_CASTEiJ_G0028270.1 mouse_genomes_project 4 150009077 150032354 - MGP_CASTEiJ_P0069552 Slc45a1 protein_coding protein_coding MGP_CASTEiJ_T0069553.1 MGP_CASTEiJ_G0028270.1 mouse_genomes_project 4 150023770 150024571 - Slc45a1 protein_coding retained_intron MGP_CASTEiJ_T0004468.1 MGP_CASTEiJ_G0003883.1 mouse_genomes_project 4 148837115 148839291 - Gm13066 antisense antisense MGP_CASTEiJ_T0065628.1 MGP_CASTEiJ_G0027409.1 mouse_genomes_project 4 46024626 46065880 + MGP_CASTEiJ_P0065628 Nr4a3 protein_coding protein_coding MGP_CASTEiJ_T0065629.1 MGP_CASTEiJ_G0027409.1 mouse_genomes_project 4 46024704 46029647 + Nr4a3 protein_coding processed_transcript MGP_CASTEiJ_T0065630.1 MGP_CASTEiJ_G0027409.1 mouse_genomes_project 4 46028592 46065881 + MGP_CASTEiJ_P0065630 Nr4a3 protein_coding protein_coding MGP_CASTEiJ_T0065631.1 MGP_CASTEiJ_G0027409.1 mouse_genomes_project 4 46030729 46036205 + Nr4a3 protein_coding processed_transcript MGP_CASTEiJ_T0065888.1 MGP_CASTEiJ_G0027477.1 mouse_genomes_project 4 58125211 58269435 + MGP_CASTEiJ_P0065888 E130308A19Rik protein_coding protein_coding MGP_CASTEiJ_T0065889.1 MGP_CASTEiJ_G0027477.1 mouse_genomes_project 4 58125243 58228387 + MGP_CASTEiJ_P0065889 E130308A19Rik protein_coding protein_coding MGP_CASTEiJ_T0065890.1 MGP_CASTEiJ_G0027477.1 mouse_genomes_project 4 58197122 58227230 + E130308A19Rik protein_coding processed_transcript MGP_CASTEiJ_T0010358.1 MGP_CASTEiJ_G0008546.1 mouse_genomes_project 4 155848896 155848966 - Mir200b miRNA miRNA MGP_CASTEiJ_T0004319.1 MGP_CASTEiJ_G0003770.1 mouse_genomes_project 4 41458038 41462716 + antisense antisense MGP_CASTEiJ_T0014217.1 MGP_CASTEiJ_G0012380.1 mouse_genomes_project 4 104102735 104103004 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0066437.1 MGP_CASTEiJ_G0027607.1 mouse_genomes_project 4 96362200 96370953 + MGP_CASTEiJ_P0066437 L1td1 protein_coding protein_coding MGP_CASTEiJ_T0066438.1 MGP_CASTEiJ_G0027607.1 mouse_genomes_project 4 96362214 96376873 + MGP_CASTEiJ_P0066438 L1td1 protein_coding protein_coding MGP_CASTEiJ_T0066439.1 MGP_CASTEiJ_G0027607.1 mouse_genomes_project 4 96362259 96370869 + MGP_CASTEiJ_P0066439 L1td1 protein_coding protein_coding MGP_CASTEiJ_T0066440.1 MGP_CASTEiJ_G0027607.1 mouse_genomes_project 4 96370511 96376515 + MGP_CASTEiJ_P0066440 L1td1 protein_coding protein_coding MGP_CASTEiJ_T0067565.1 MGP_CASTEiJ_G0027833.1 mouse_genomes_project 4 117523875 117527384 - MGP_CASTEiJ_P0067565 Guca2b protein_coding protein_coding MGP_CASTEiJ_T0067566.1 MGP_CASTEiJ_G0027833.1 mouse_genomes_project 4 117523875 117527211 - MGP_CASTEiJ_P0067566 Guca2b protein_coding protein_coding MGP_CASTEiJ_T0004419.1 MGP_CASTEiJ_G0003846.1 mouse_genomes_project 4 132113599 132116774 - Gm13257 antisense antisense MGP_CASTEiJ_T0066280.1 MGP_CASTEiJ_G0027561.1 mouse_genomes_project 4 86058230 86058803 - MGP_CASTEiJ_P0066280 protein_coding protein_coding MGP_CASTEiJ_T0014266.1 MGP_CASTEiJ_G0012429.1 mouse_genomes_project 4 119092627 119094857 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101059.1 MGP_CASTEiJ_G0037972.1 mouse_genomes_project 4 76526525 76526648 - Gm25836 snoRNA snoRNA MGP_CASTEiJ_T0099771.1 MGP_CASTEiJ_G0036684.1 mouse_genomes_project 4 12069622 12069729 + Gm24317 snRNA snRNA MGP_CASTEiJ_T0014291.1 MGP_CASTEiJ_G0012454.1 mouse_genomes_project 4 125683267 125683690 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102321.1 MGP_CASTEiJ_G0039046.1 mouse_genomes_project 4 112985867 113039446 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0065859.1 MGP_CASTEiJ_G0027470.1 mouse_genomes_project 4 57454368 57495793 + MGP_CASTEiJ_P0065859 Gm20503 protein_coding protein_coding MGP_CASTEiJ_T0014142.1 MGP_CASTEiJ_G0012305.1 mouse_genomes_project 4 73956460 73956854 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014250.1 MGP_CASTEiJ_G0012413.1 mouse_genomes_project 4 115216362 115216748 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010345.1 MGP_CASTEiJ_G0008533.1 mouse_genomes_project 4 138854854 138854924 + Mir7020 miRNA miRNA MGP_CASTEiJ_T0017287.1 MGP_CASTEiJ_G0014850.1 mouse_genomes_project 4 12899849 13009717 + A530072M11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0069060.1 MGP_CASTEiJ_G0028156.1 mouse_genomes_project 4 140038869 140063163 + MGP_CASTEiJ_P0069060 Rcc2 protein_coding protein_coding MGP_CASTEiJ_T0069061.1 MGP_CASTEiJ_G0028156.1 mouse_genomes_project 4 140039801 140063163 + MGP_CASTEiJ_P0069061 Rcc2 protein_coding protein_coding MGP_CASTEiJ_T0069062.1 MGP_CASTEiJ_G0028156.1 mouse_genomes_project 4 140039801 140050687 + MGP_CASTEiJ_P0069062 Rcc2 protein_coding protein_coding MGP_CASTEiJ_T0069063.1 MGP_CASTEiJ_G0028156.1 mouse_genomes_project 4 140054617 140057246 + Rcc2 protein_coding processed_transcript MGP_CASTEiJ_T0069064.1 MGP_CASTEiJ_G0028156.1 mouse_genomes_project 4 140054644 140057154 + Rcc2 protein_coding processed_transcript MGP_CASTEiJ_T0013930.1 MGP_CASTEiJ_G0012093.1 mouse_genomes_project 4 199217 199814 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014099.1 MGP_CASTEiJ_G0012262.1 mouse_genomes_project 4 55790124 55790586 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069411.1 MGP_CASTEiJ_G0028245.1 mouse_genomes_project 4 147825902 147857776 + MGP_CASTEiJ_P0069411 Gm572 protein_coding protein_coding MGP_CASTEiJ_T0068767.1 MGP_CASTEiJ_G0028087.1 mouse_genomes_project 4 134873110 134891660 - MGP_CASTEiJ_P0068767 Tceb3 protein_coding protein_coding MGP_CASTEiJ_T0010304.1 MGP_CASTEiJ_G0008492.1 mouse_genomes_project 4 86405519 86405625 - Mir31 miRNA miRNA MGP_CASTEiJ_T0014331.1 MGP_CASTEiJ_G0012494.1 mouse_genomes_project 4 147164101 147167391 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067475.1 MGP_CASTEiJ_G0027817.1 mouse_genomes_project 4 117018931 117023259 - MGP_CASTEiJ_P0067475 Zfp691 protein_coding protein_coding MGP_CASTEiJ_T0067476.1 MGP_CASTEiJ_G0027817.1 mouse_genomes_project 4 117018931 117023598 - MGP_CASTEiJ_P0067476 Zfp691 protein_coding protein_coding MGP_CASTEiJ_T0067477.1 MGP_CASTEiJ_G0027817.1 mouse_genomes_project 4 117018934 117023259 - MGP_CASTEiJ_P0067477 Zfp691 protein_coding protein_coding MGP_CASTEiJ_T0067478.1 MGP_CASTEiJ_G0027817.1 mouse_genomes_project 4 117020398 117023259 - MGP_CASTEiJ_P0067478 Zfp691 protein_coding protein_coding MGP_CASTEiJ_T0099845.1 MGP_CASTEiJ_G0036758.1 mouse_genomes_project 4 140281576 140281692 + Gm26226 snRNA snRNA MGP_CASTEiJ_T0068391.1 MGP_CASTEiJ_G0028008.1 mouse_genomes_project 4 131308883 131319798 + Rpa2 protein_coding processed_transcript MGP_CASTEiJ_T0068392.1 MGP_CASTEiJ_G0028008.1 mouse_genomes_project 4 131308886 131321818 + MGP_CASTEiJ_P0068392 Rpa2 protein_coding protein_coding MGP_CASTEiJ_T0068393.1 MGP_CASTEiJ_G0028008.1 mouse_genomes_project 4 131308927 131317339 + Rpa2 protein_coding retained_intron MGP_CASTEiJ_T0068394.1 MGP_CASTEiJ_G0028008.1 mouse_genomes_project 4 131309186 131315460 + Rpa2 protein_coding retained_intron MGP_CASTEiJ_T0068395.1 MGP_CASTEiJ_G0028008.1 mouse_genomes_project 4 131312764 131315648 + Rpa2 protein_coding retained_intron MGP_CASTEiJ_T0068396.1 MGP_CASTEiJ_G0028008.1 mouse_genomes_project 4 131318230 131320242 + MGP_CASTEiJ_P0068396 Rpa2 protein_coding protein_coding MGP_CASTEiJ_T0014292.1 MGP_CASTEiJ_G0012455.1 mouse_genomes_project 4 127233124 127234019 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069650.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151647743 151685993 - MGP_CASTEiJ_P0069650 Espn protein_coding protein_coding MGP_CASTEiJ_T0069651.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151647748 151686157 - MGP_CASTEiJ_P0069651 Espn protein_coding protein_coding MGP_CASTEiJ_T0069652.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151648269 151658074 - MGP_CASTEiJ_P0069652 Espn protein_coding protein_coding MGP_CASTEiJ_T0069653.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151648280 151686008 - MGP_CASTEiJ_P0069653 Espn protein_coding protein_coding MGP_CASTEiJ_T0069654.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151648282 151661008 - MGP_CASTEiJ_P0069654 Espn protein_coding protein_coding MGP_CASTEiJ_T0069655.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151648294 151661480 - Espn protein_coding processed_transcript MGP_CASTEiJ_T0069656.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151648402 151686069 - MGP_CASTEiJ_P0069656 Espn protein_coding unknown_likely_coding MGP_CASTEiJ_T0069657.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151648402 151686069 - MGP_CASTEiJ_P0069657 Espn protein_coding unknown_likely_coding MGP_CASTEiJ_T0069658.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151648402 151686069 - MGP_CASTEiJ_P0069658 Espn protein_coding unknown_likely_coding MGP_CASTEiJ_T0069659.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151648533 151665482 - MGP_CASTEiJ_P0069659 Espn protein_coding protein_coding MGP_CASTEiJ_T0069660.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151648533 151665439 - MGP_CASTEiJ_P0069660 Espn protein_coding protein_coding MGP_CASTEiJ_T0069661.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151648533 151665482 - MGP_CASTEiJ_P0069661 Espn protein_coding protein_coding MGP_CASTEiJ_T0069662.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151648533 151665482 - MGP_CASTEiJ_P0069662 Espn protein_coding protein_coding MGP_CASTEiJ_T0069663.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151648533 151665439 - MGP_CASTEiJ_P0069663 Espn protein_coding protein_coding MGP_CASTEiJ_T0069664.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151648533 151665482 - MGP_CASTEiJ_P0069664 Espn protein_coding protein_coding MGP_CASTEiJ_T0069665.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151648533 151665439 - MGP_CASTEiJ_P0069665 Espn protein_coding protein_coding MGP_CASTEiJ_T0069666.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151648533 151665439 - MGP_CASTEiJ_P0069666 Espn protein_coding protein_coding MGP_CASTEiJ_T0069667.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151648544 151660984 - Espn protein_coding processed_transcript MGP_CASTEiJ_T0069668.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151652062 151661009 - Espn protein_coding processed_transcript MGP_CASTEiJ_T0069669.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151652877 151682876 - MGP_CASTEiJ_P0069669 Espn protein_coding protein_coding MGP_CASTEiJ_T0069670.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151653433 151686070 - MGP_CASTEiJ_P0069670 Espn protein_coding unknown_likely_coding MGP_CASTEiJ_T0069671.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151656942 151661000 - Espn protein_coding processed_transcript MGP_CASTEiJ_T0069672.1 MGP_CASTEiJ_G0028288.1 mouse_genomes_project 4 151657290 151660373 - Espn protein_coding processed_transcript MGP_CASTEiJ_T0014011.1 MGP_CASTEiJ_G0012174.1 mouse_genomes_project 4 25595613 25596878 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101052.1 MGP_CASTEiJ_G0037965.1 mouse_genomes_project 4 63518296 63518429 + Gm25480 snoRNA snoRNA MGP_CASTEiJ_T0014243.1 MGP_CASTEiJ_G0012406.1 mouse_genomes_project 4 114078336 114078752 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0067951.1 MGP_CASTEiJ_G0027926.1 mouse_genomes_project 4 125593859 125599041 - MGP_CASTEiJ_P0067951 Gjb3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067613.1 MGP_CASTEiJ_G0027844.1 mouse_genomes_project 4 118811770 118843992 + Rims3 protein_coding processed_transcript MGP_CASTEiJ_T0067614.1 MGP_CASTEiJ_G0027844.1 mouse_genomes_project 4 118811773 118857613 + MGP_CASTEiJ_P0067614 Rims3 protein_coding protein_coding MGP_CASTEiJ_T0067615.1 MGP_CASTEiJ_G0027844.1 mouse_genomes_project 4 118818728 118857613 + MGP_CASTEiJ_P0067615 Rims3 protein_coding protein_coding MGP_CASTEiJ_T0067616.1 MGP_CASTEiJ_G0027844.1 mouse_genomes_project 4 118837378 118852591 + MGP_CASTEiJ_P0067616 Rims3 protein_coding protein_coding MGP_CASTEiJ_T0014136.1 MGP_CASTEiJ_G0012299.1 mouse_genomes_project 4 72394542 72395722 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0065487.1 MGP_CASTEiJ_G0027376.1 mouse_genomes_project 4 42799877 42821552 - MGP_CASTEiJ_P0065487 protein_coding protein_coding MGP_CASTEiJ_T0065488.1 MGP_CASTEiJ_G0027376.1 mouse_genomes_project 4 42799880 42821570 - MGP_CASTEiJ_P0065488 protein_coding protein_coding MGP_CASTEiJ_T0065489.1 MGP_CASTEiJ_G0027376.1 mouse_genomes_project 4 42801584 42821570 - MGP_CASTEiJ_P0065489 protein_coding protein_coding MGP_CASTEiJ_T0065490.1 MGP_CASTEiJ_G0027376.1 mouse_genomes_project 4 42804025 42821303 - MGP_CASTEiJ_P0065490 protein_coding protein_coding MGP_CASTEiJ_T0014092.1 MGP_CASTEiJ_G0012255.1 mouse_genomes_project 4 53501721 53502181 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007714.1 MGP_CASTEiJ_G0006326.1 mouse_genomes_project 4 99061345 99111262 + 0610043K17Rik lincRNA lincRNA MGP_CASTEiJ_T0007716.1 MGP_CASTEiJ_G0006326.1 mouse_genomes_project 4 99075516 99101711 + 0610043K17Rik lincRNA lincRNA MGP_CASTEiJ_T0064590.1 MGP_CASTEiJ_G0027194.1 mouse_genomes_project 4 5211916 5279338 + Chd7 protein_coding retained_intron MGP_CASTEiJ_T0064591.1 MGP_CASTEiJ_G0027194.1 mouse_genomes_project 4 5211980 5309949 + MGP_CASTEiJ_P0064591 Chd7 protein_coding protein_coding MGP_CASTEiJ_T0064592.1 MGP_CASTEiJ_G0027194.1 mouse_genomes_project 4 5212431 5392711 + MGP_CASTEiJ_P0064592 Chd7 protein_coding protein_coding MGP_CASTEiJ_T0064593.1 MGP_CASTEiJ_G0027194.1 mouse_genomes_project 4 5212875 5394660 + MGP_CASTEiJ_P0064593 Chd7 protein_coding protein_coding MGP_CASTEiJ_T0064594.1 MGP_CASTEiJ_G0027194.1 mouse_genomes_project 4 5233437 5275004 + MGP_CASTEiJ_P0064594 Chd7 protein_coding protein_coding MGP_CASTEiJ_T0064595.1 MGP_CASTEiJ_G0027194.1 mouse_genomes_project 4 5274879 5393125 + MGP_CASTEiJ_P0064595 Chd7 protein_coding protein_coding MGP_CASTEiJ_T0064596.1 MGP_CASTEiJ_G0027194.1 mouse_genomes_project 4 5366200 5370649 + Chd7 protein_coding processed_transcript MGP_CASTEiJ_T0067723.1 MGP_CASTEiJ_G0027876.1 mouse_genomes_project 4 121901420 121901939 - MGP_CASTEiJ_P0067723 4930535I16Rik protein_coding protein_coding MGP_CASTEiJ_T0102308.1 MGP_CASTEiJ_G0039033.1 mouse_genomes_project 4 86035938 86037627 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0014005.1 MGP_CASTEiJ_G0012168.1 mouse_genomes_project 4 24457972 24458409 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004484.1 MGP_CASTEiJ_G0003896.1 mouse_genomes_project 4 154771484 154774856 + Gm10564 antisense antisense MGP_CASTEiJ_T0066737.1 MGP_CASTEiJ_G0027666.1 mouse_genomes_project 4 105127329 105135995 + MGP_CASTEiJ_P0066737 Ldlrad1 protein_coding protein_coding MGP_CASTEiJ_T0064654.1 MGP_CASTEiJ_G0027203.1 mouse_genomes_project 4 7789350 7846019 - MGP_CASTEiJ_P0064654 Ints8 protein_coding protein_coding MGP_CASTEiJ_T0064655.1 MGP_CASTEiJ_G0027203.1 mouse_genomes_project 4 7794225 7803644 - Ints8 protein_coding processed_transcript MGP_CASTEiJ_T0064656.1 MGP_CASTEiJ_G0027203.1 mouse_genomes_project 4 7794495 7845988 - MGP_CASTEiJ_P0064656 Ints8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064657.1 MGP_CASTEiJ_G0027203.1 mouse_genomes_project 4 7794496 7826956 - Ints8 protein_coding processed_transcript MGP_CASTEiJ_T0064658.1 MGP_CASTEiJ_G0027203.1 mouse_genomes_project 4 7794498 7846019 - MGP_CASTEiJ_P0064658 Ints8 protein_coding protein_coding MGP_CASTEiJ_T0064659.1 MGP_CASTEiJ_G0027203.1 mouse_genomes_project 4 7794498 7846019 - MGP_CASTEiJ_P0064659 Ints8 protein_coding protein_coding MGP_CASTEiJ_T0064660.1 MGP_CASTEiJ_G0027203.1 mouse_genomes_project 4 7794499 7804211 - Ints8 protein_coding processed_transcript MGP_CASTEiJ_T0064661.1 MGP_CASTEiJ_G0027203.1 mouse_genomes_project 4 7798854 7810367 - Ints8 protein_coding processed_transcript MGP_CASTEiJ_T0064662.1 MGP_CASTEiJ_G0027203.1 mouse_genomes_project 4 7809026 7845975 - MGP_CASTEiJ_P0064662 Ints8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0064663.1 MGP_CASTEiJ_G0027203.1 mouse_genomes_project 4 7823985 7827352 - Ints8 protein_coding processed_transcript MGP_CASTEiJ_T0065980.1 MGP_CASTEiJ_G0027499.1 mouse_genomes_project 4 60237299 60240924 + MGP_CASTEiJ_P0065980 Orm1 protein_coding protein_coding MGP_CASTEiJ_T0064735.1 MGP_CASTEiJ_G0027221.1 mouse_genomes_project 4 11312569 11466220 - MGP_CASTEiJ_P0064735 Lrrc69 protein_coding protein_coding MGP_CASTEiJ_T0064736.1 MGP_CASTEiJ_G0027221.1 mouse_genomes_project 4 11340230 11422224 - Lrrc69 protein_coding processed_transcript MGP_CASTEiJ_T0064737.1 MGP_CASTEiJ_G0027221.1 mouse_genomes_project 4 11340230 11466212 - MGP_CASTEiJ_P0064737 Lrrc69 protein_coding protein_coding MGP_CASTEiJ_T0068894.1 MGP_CASTEiJ_G0028116.1 mouse_genomes_project 4 136768529 136832032 - MGP_CASTEiJ_P0068894 Alpl protein_coding protein_coding MGP_CASTEiJ_T0068895.1 MGP_CASTEiJ_G0028116.1 mouse_genomes_project 4 136773245 136773973 - Alpl protein_coding processed_transcript MGP_CASTEiJ_T0068896.1 MGP_CASTEiJ_G0028116.1 mouse_genomes_project 4 136779375 136796010 - MGP_CASTEiJ_P0068896 Alpl protein_coding protein_coding MGP_CASTEiJ_T0068897.1 MGP_CASTEiJ_G0028116.1 mouse_genomes_project 4 136782505 136817962 - MGP_CASTEiJ_P0068897 Alpl protein_coding protein_coding MGP_CASTEiJ_T0068898.1 MGP_CASTEiJ_G0028116.1 mouse_genomes_project 4 136783768 136821144 - MGP_CASTEiJ_P0068898 Alpl protein_coding protein_coding MGP_CASTEiJ_T0068899.1 MGP_CASTEiJ_G0028116.1 mouse_genomes_project 4 136784312 136831878 - Alpl protein_coding processed_transcript MGP_CASTEiJ_T0068900.1 MGP_CASTEiJ_G0028116.1 mouse_genomes_project 4 136787333 136801072 - Alpl protein_coding processed_transcript MGP_CASTEiJ_T0068901.1 MGP_CASTEiJ_G0028116.1 mouse_genomes_project 4 136787333 136801277 - Alpl protein_coding processed_transcript MGP_CASTEiJ_T0010308.1 MGP_CASTEiJ_G0008496.1 mouse_genomes_project 4 96286420 96286516 + Gm26154 miRNA miRNA MGP_CASTEiJ_T0101100.1 MGP_CASTEiJ_G0038013.1 mouse_genomes_project 4 153812478 153812622 + Gm26036 snoRNA snoRNA MGP_CASTEiJ_T0065903.1 MGP_CASTEiJ_G0027482.1 mouse_genomes_project 4 59121583 59133323 + MGP_CASTEiJ_P0065903 Slc31a2 protein_coding protein_coding MGP_CASTEiJ_T0099772.1 MGP_CASTEiJ_G0036685.1 mouse_genomes_project 4 13594095 13594201 - Gm23975 snRNA snRNA MGP_CASTEiJ_T0004377.1 MGP_CASTEiJ_G0003812.1 mouse_genomes_project 4 108062744 108063821 - Dmrta2os antisense antisense MGP_CASTEiJ_T0004378.1 MGP_CASTEiJ_G0003812.1 mouse_genomes_project 4 108062753 108063499 - Dmrta2os antisense antisense MGP_CASTEiJ_T0068720.1 MGP_CASTEiJ_G0028076.1 mouse_genomes_project 4 134513821 134538995 + MGP_CASTEiJ_P0068720 Ifnlr1 protein_coding protein_coding MGP_CASTEiJ_T0064827.1 MGP_CASTEiJ_G0027248.1 mouse_genomes_project 4 18702559 18738487 + MGP_CASTEiJ_P0064827 Coq3 protein_coding protein_coding MGP_CASTEiJ_T0064828.1 MGP_CASTEiJ_G0027248.1 mouse_genomes_project 4 18725155 18726890 + Coq3 protein_coding processed_transcript MGP_CASTEiJ_T0007672.1 MGP_CASTEiJ_G0006287.1 mouse_genomes_project 4 57732366 57735571 + Gm12596 lincRNA lincRNA MGP_CASTEiJ_T0007666.1 MGP_CASTEiJ_G0006283.1 mouse_genomes_project 4 54529581 54533361 - 2310081O03Rik lincRNA lincRNA MGP_CASTEiJ_T0069169.1 MGP_CASTEiJ_G0028180.1 mouse_genomes_project 4 140997226 141037838 - MGP_CASTEiJ_P0069169 Fblim1 protein_coding protein_coding MGP_CASTEiJ_T0069170.1 MGP_CASTEiJ_G0028180.1 mouse_genomes_project 4 140997226 141030207 - MGP_CASTEiJ_P0069170 Fblim1 protein_coding protein_coding MGP_CASTEiJ_T0069171.1 MGP_CASTEiJ_G0028180.1 mouse_genomes_project 4 140997226 141028506 - MGP_CASTEiJ_P0069171 Fblim1 protein_coding protein_coding MGP_CASTEiJ_T0069172.1 MGP_CASTEiJ_G0028180.1 mouse_genomes_project 4 141016090 141030118 - MGP_CASTEiJ_P0069172 Fblim1 protein_coding protein_coding MGP_CASTEiJ_T0069173.1 MGP_CASTEiJ_G0028180.1 mouse_genomes_project 4 141016112 141037882 - MGP_CASTEiJ_P0069173 Fblim1 protein_coding protein_coding MGP_CASTEiJ_T0069174.1 MGP_CASTEiJ_G0028180.1 mouse_genomes_project 4 141016112 141037823 - MGP_CASTEiJ_P0069174 Fblim1 protein_coding protein_coding MGP_CASTEiJ_T0069175.1 MGP_CASTEiJ_G0028180.1 mouse_genomes_project 4 141016135 141028799 - MGP_CASTEiJ_P0069175 Fblim1 protein_coding protein_coding MGP_CASTEiJ_T0069176.1 MGP_CASTEiJ_G0028180.1 mouse_genomes_project 4 141016777 141030315 - MGP_CASTEiJ_P0069176 Fblim1 protein_coding protein_coding MGP_CASTEiJ_T0069177.1 MGP_CASTEiJ_G0028180.1 mouse_genomes_project 4 141016840 141024912 - Fblim1 protein_coding processed_transcript MGP_CASTEiJ_T0069178.1 MGP_CASTEiJ_G0028180.1 mouse_genomes_project 4 141016856 141030171 - MGP_CASTEiJ_P0069178 Fblim1 protein_coding protein_coding MGP_CASTEiJ_T0069179.1 MGP_CASTEiJ_G0028180.1 mouse_genomes_project 4 141016857 141028506 - MGP_CASTEiJ_P0069179 Fblim1 protein_coding protein_coding MGP_CASTEiJ_T0069180.1 MGP_CASTEiJ_G0028180.1 mouse_genomes_project 4 141016867 141028488 - MGP_CASTEiJ_P0069180 Fblim1 protein_coding protein_coding MGP_CASTEiJ_T0069181.1 MGP_CASTEiJ_G0028180.1 mouse_genomes_project 4 141023676 141037811 - MGP_CASTEiJ_P0069181 Fblim1 protein_coding protein_coding MGP_CASTEiJ_T0069182.1 MGP_CASTEiJ_G0028180.1 mouse_genomes_project 4 141023727 141037822 - MGP_CASTEiJ_P0069182 Fblim1 protein_coding protein_coding MGP_CASTEiJ_T0069183.1 MGP_CASTEiJ_G0028180.1 mouse_genomes_project 4 141023794 141037813 - MGP_CASTEiJ_P0069183 Fblim1 protein_coding protein_coding MGP_CASTEiJ_T0067540.1 MGP_CASTEiJ_G0027827.1 mouse_genomes_project 4 117279104 117282935 - Ppcs protein_coding retained_intron MGP_CASTEiJ_T0067541.1 MGP_CASTEiJ_G0027827.1 mouse_genomes_project 4 117279104 117282997 - MGP_CASTEiJ_P0067541 Ppcs protein_coding protein_coding MGP_CASTEiJ_T0067542.1 MGP_CASTEiJ_G0027827.1 mouse_genomes_project 4 117279104 117282953 - MGP_CASTEiJ_P0067542 Ppcs protein_coding protein_coding MGP_CASTEiJ_T0068977.1 MGP_CASTEiJ_G0028135.1 mouse_genomes_project 4 138011146 138021101 - MGP_CASTEiJ_P0068977 protein_coding protein_coding MGP_CASTEiJ_T0069495.1 MGP_CASTEiJ_G0028260.1 mouse_genomes_project 4 149017170 149042615 - MGP_CASTEiJ_P0069495 Tmem201 protein_coding protein_coding MGP_CASTEiJ_T0069496.1 MGP_CASTEiJ_G0028260.1 mouse_genomes_project 4 149017178 149042615 - MGP_CASTEiJ_P0069496 Tmem201 protein_coding protein_coding MGP_CASTEiJ_T0069497.1 MGP_CASTEiJ_G0028260.1 mouse_genomes_project 4 149027333 149035208 - Tmem201 protein_coding retained_intron MGP_CASTEiJ_T0069498.1 MGP_CASTEiJ_G0028260.1 mouse_genomes_project 4 149027333 149042615 - MGP_CASTEiJ_P0069498 Tmem201 protein_coding protein_coding MGP_CASTEiJ_T0069499.1 MGP_CASTEiJ_G0028260.1 mouse_genomes_project 4 149031249 149042569 - Tmem201 protein_coding retained_intron MGP_CASTEiJ_T0069500.1 MGP_CASTEiJ_G0028260.1 mouse_genomes_project 4 149035684 149042341 - Tmem201 protein_coding processed_transcript MGP_CASTEiJ_T0067717.1 MGP_CASTEiJ_G0027874.1 mouse_genomes_project 4 121886895 121894374 + MGP_CASTEiJ_P0067717 Mycbp protein_coding protein_coding MGP_CASTEiJ_T0067718.1 MGP_CASTEiJ_G0027874.1 mouse_genomes_project 4 121886977 121893184 + MGP_CASTEiJ_P0067718 Mycbp protein_coding protein_coding MGP_CASTEiJ_T0067719.1 MGP_CASTEiJ_G0027874.1 mouse_genomes_project 4 121887104 121891837 + Mycbp protein_coding processed_transcript MGP_CASTEiJ_T0067720.1 MGP_CASTEiJ_G0027874.1 mouse_genomes_project 4 121887199 121893350 + Mycbp protein_coding processed_transcript MGP_CASTEiJ_T0066107.1 MGP_CASTEiJ_G0027533.1 mouse_genomes_project 4 78207071 78263856 + MGP_CASTEiJ_P0066107 Lurap1l protein_coding protein_coding MGP_CASTEiJ_T0010348.1 MGP_CASTEiJ_G0008536.1 mouse_genomes_project 4 140057088 140057152 + Gm25951 miRNA miRNA MGP_CASTEiJ_T0069094.1 MGP_CASTEiJ_G0028165.1 mouse_genomes_project 4 140382860 140388349 - Crocc protein_coding retained_intron MGP_CASTEiJ_T0069095.1 MGP_CASTEiJ_G0028165.1 mouse_genomes_project 4 140382860 140395498 - Crocc protein_coding retained_intron MGP_CASTEiJ_T0069096.1 MGP_CASTEiJ_G0028165.1 mouse_genomes_project 4 140382860 140426678 - MGP_CASTEiJ_P0069096 Crocc protein_coding protein_coding MGP_CASTEiJ_T0069097.1 MGP_CASTEiJ_G0028165.1 mouse_genomes_project 4 140382860 140419883 - MGP_CASTEiJ_P0069097 Crocc protein_coding protein_coding MGP_CASTEiJ_T0069098.1 MGP_CASTEiJ_G0028165.1 mouse_genomes_project 4 140382863 140419822 - MGP_CASTEiJ_P0069098 Crocc protein_coding protein_coding MGP_CASTEiJ_T0069099.1 MGP_CASTEiJ_G0028165.1 mouse_genomes_project 4 140382863 140424327 - MGP_CASTEiJ_P0069099 Crocc protein_coding protein_coding MGP_CASTEiJ_T0069100.1 MGP_CASTEiJ_G0028165.1 mouse_genomes_project 4 140383206 140385028 - Crocc protein_coding retained_intron MGP_CASTEiJ_T0069101.1 MGP_CASTEiJ_G0028165.1 mouse_genomes_project 4 140385952 140388741 - Crocc protein_coding retained_intron MGP_CASTEiJ_T0069102.1 MGP_CASTEiJ_G0028165.1 mouse_genomes_project 4 140387775 140388771 - Crocc protein_coding retained_intron MGP_CASTEiJ_T0069103.1 MGP_CASTEiJ_G0028165.1 mouse_genomes_project 4 140411952 140424237 - Crocc protein_coding retained_intron MGP_CASTEiJ_T0069104.1 MGP_CASTEiJ_G0028165.1 mouse_genomes_project 4 140413190 140426673 - MGP_CASTEiJ_P0069104 Crocc protein_coding protein_coding MGP_CASTEiJ_T0007644.1 MGP_CASTEiJ_G0006266.1 mouse_genomes_project 4 42743637 42750832 + Gm12678 lincRNA lincRNA MGP_CASTEiJ_T0004333.1 MGP_CASTEiJ_G0003782.1 mouse_genomes_project 4 58414445 58420648 - Gm12542 antisense antisense MGP_CASTEiJ_T0067053.1 MGP_CASTEiJ_G0027726.1 mouse_genomes_project 4 112688483 112734949 + MGP_CASTEiJ_P0067053 Stil protein_coding protein_coding MGP_CASTEiJ_T0067054.1 MGP_CASTEiJ_G0027726.1 mouse_genomes_project 4 112688506 112731132 + MGP_CASTEiJ_P0067054 Stil protein_coding protein_coding MGP_CASTEiJ_T0067055.1 MGP_CASTEiJ_G0027726.1 mouse_genomes_project 4 112688506 112734949 + MGP_CASTEiJ_P0067055 Stil protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067056.1 MGP_CASTEiJ_G0027726.1 mouse_genomes_project 4 112695120 112704561 + MGP_CASTEiJ_P0067056 Stil protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067057.1 MGP_CASTEiJ_G0027726.1 mouse_genomes_project 4 112698484 112710894 + Stil protein_coding processed_transcript MGP_CASTEiJ_T0067058.1 MGP_CASTEiJ_G0027726.1 mouse_genomes_project 4 112704495 112712443 + Stil protein_coding retained_intron MGP_CASTEiJ_T0098383.1 MGP_CASTEiJ_G0035314.1 mouse_genomes_project 4 128317576 128319217 + pseudogene pseudogene MGP_CASTEiJ_T0014024.1 MGP_CASTEiJ_G0012187.1 mouse_genomes_project 4 30113942 30114565 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099776.1 MGP_CASTEiJ_G0036689.1 mouse_genomes_project 4 29182388 29182506 - Gm26254 snRNA snRNA MGP_CASTEiJ_T0101067.1 MGP_CASTEiJ_G0037980.1 mouse_genomes_project 4 100490922 100491050 + Gm24869 snoRNA snoRNA MGP_CASTEiJ_T0065981.1 MGP_CASTEiJ_G0027500.1 mouse_genomes_project 4 60260373 60263728 + MGP_CASTEiJ_P0065981 Orm3 protein_coding protein_coding MGP_CASTEiJ_T0065982.1 MGP_CASTEiJ_G0027500.1 mouse_genomes_project 4 60260375 60263726 + MGP_CASTEiJ_P0065982 Orm3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014001.1 MGP_CASTEiJ_G0012164.1 mouse_genomes_project 4 23318057 23318274 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0069569.1 MGP_CASTEiJ_G0028274.1 mouse_genomes_project 4 150333550 151351885 - MGP_CASTEiJ_P0069569 Camta1 protein_coding protein_coding MGP_CASTEiJ_T0069588.1 MGP_CASTEiJ_G0028274.1 mouse_genomes_project 4 150492522 151352092 - MGP_CASTEiJ_P0069588 Camta1 protein_coding protein_coding MGP_CASTEiJ_T0069589.1 MGP_CASTEiJ_G0028274.1 mouse_genomes_project 4 150492523 150512789 - MGP_CASTEiJ_P0069589 Camta1 protein_coding protein_coding MGP_CASTEiJ_T0069590.1 MGP_CASTEiJ_G0028274.1 mouse_genomes_project 4 150492523 151351962 - MGP_CASTEiJ_P0069590 Camta1 protein_coding protein_coding MGP_CASTEiJ_T0069591.1 MGP_CASTEiJ_G0028274.1 mouse_genomes_project 4 150492811 150562970 - MGP_CASTEiJ_P0069591 Camta1 protein_coding protein_coding MGP_CASTEiJ_T0069592.1 MGP_CASTEiJ_G0028274.1 mouse_genomes_project 4 150492811 150541513 - MGP_CASTEiJ_P0069592 Camta1 protein_coding protein_coding MGP_CASTEiJ_T0069593.1 MGP_CASTEiJ_G0028274.1 mouse_genomes_project 4 150519000 150572929 - Camta1 protein_coding processed_transcript MGP_CASTEiJ_T0069594.1 MGP_CASTEiJ_G0028274.1 mouse_genomes_project 4 150519085 150541240 - MGP_CASTEiJ_P0069594 Camta1 protein_coding protein_coding MGP_CASTEiJ_T0069596.1 MGP_CASTEiJ_G0028274.1 mouse_genomes_project 4 150923593 151351866 - Camta1 protein_coding processed_transcript MGP_CASTEiJ_T0069597.1 MGP_CASTEiJ_G0028274.1 mouse_genomes_project 4 151271877 151351920 - Camta1 protein_coding processed_transcript MGP_CASTEiJ_T0069598.1 MGP_CASTEiJ_G0028274.1 mouse_genomes_project 4 151273543 151351954 - Camta1 protein_coding processed_transcript MGP_CASTEiJ_T0069599.1 MGP_CASTEiJ_G0028274.1 mouse_genomes_project 4 151273807 151351885 - MGP_CASTEiJ_P0069599 Camta1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0067413.1 MGP_CASTEiJ_G0027795.1 mouse_genomes_project 4 116124226 116170893 - MGP_CASTEiJ_P0067413 Szt2 protein_coding protein_coding MGP_CASTEiJ_T0067414.1 MGP_CASTEiJ_G0027795.1 mouse_genomes_project 4 116124230 116135500 - MGP_CASTEiJ_P0067414 Szt2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0067415.1 MGP_CASTEiJ_G0027795.1 mouse_genomes_project 4 116124890 116126550 - Szt2 protein_coding processed_transcript MGP_CASTEiJ_T0067416.1 MGP_CASTEiJ_G0027795.1 mouse_genomes_project 4 116130213 116131104 - Szt2 protein_coding retained_intron MGP_CASTEiJ_T0067417.1 MGP_CASTEiJ_G0027795.1 mouse_genomes_project 4 116133898 116135051 - Szt2 protein_coding retained_intron MGP_CASTEiJ_T0067418.1 MGP_CASTEiJ_G0027795.1 mouse_genomes_project 4 116150546 116151347 - Szt2 protein_coding processed_transcript MGP_CASTEiJ_T0065015.1 MGP_CASTEiJ_G0027291.1 mouse_genomes_project 4 32566556 32601843 - MGP_CASTEiJ_P0065015 3110043O21Rik protein_coding protein_coding MGP_CASTEiJ_T0065016.1 MGP_CASTEiJ_G0027291.1 mouse_genomes_project 4 32566561 32602150 - MGP_CASTEiJ_P0065016 3110043O21Rik protein_coding protein_coding MGP_CASTEiJ_T0065017.1 MGP_CASTEiJ_G0027291.1 mouse_genomes_project 4 32573294 32585599 - 3110043O21Rik protein_coding retained_intron MGP_CASTEiJ_T0065018.1 MGP_CASTEiJ_G0027291.1 mouse_genomes_project 4 32588443 32602202 - 3110043O21Rik protein_coding retained_intron MGP_CASTEiJ_T0065019.1 MGP_CASTEiJ_G0027291.1 mouse_genomes_project 4 32594416 32602150 - 3110043O21Rik protein_coding processed_transcript MGP_CASTEiJ_T0065020.1 MGP_CASTEiJ_G0027291.1 mouse_genomes_project 4 32594600 32602150 - 3110043O21Rik protein_coding processed_transcript MGP_CASTEiJ_T0067594.1 MGP_CASTEiJ_G0027838.1 mouse_genomes_project 4 118461272 118465670 + MGP_CASTEiJ_P0067594 Slfnl1 protein_coding protein_coding MGP_CASTEiJ_T0067595.1 MGP_CASTEiJ_G0027838.1 mouse_genomes_project 4 118462500 118465676 + MGP_CASTEiJ_P0067595 Slfnl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0066507.1 MGP_CASTEiJ_G0027624.1 mouse_genomes_project 4 98762582 98852939 + MGP_CASTEiJ_P0066507 Raver2 protein_coding protein_coding MGP_CASTEiJ_T0066508.1 MGP_CASTEiJ_G0027624.1 mouse_genomes_project 4 98762582 98835885 + MGP_CASTEiJ_P0066508 Raver2 protein_coding protein_coding MGP_CASTEiJ_T0066509.1 MGP_CASTEiJ_G0027624.1 mouse_genomes_project 4 98763078 98806935 + Raver2 protein_coding processed_transcript MGP_CASTEiJ_T0066894.1 MGP_CASTEiJ_G0027693.1 mouse_genomes_project 4 106845140 106866440 - MGP_CASTEiJ_P0066894 Btf3l4 protein_coding protein_coding MGP_CASTEiJ_T0066895.1 MGP_CASTEiJ_G0027693.1 mouse_genomes_project 4 106847570 106866387 - MGP_CASTEiJ_P0066895 Btf3l4 protein_coding protein_coding MGP_CASTEiJ_T0066896.1 MGP_CASTEiJ_G0027693.1 mouse_genomes_project 4 106847643 106866377 - MGP_CASTEiJ_P0066896 Btf3l4 protein_coding protein_coding MGP_CASTEiJ_T0066897.1 MGP_CASTEiJ_G0027693.1 mouse_genomes_project 4 106847684 106864753 - MGP_CASTEiJ_P0066897 Btf3l4 protein_coding protein_coding MGP_CASTEiJ_T0066898.1 MGP_CASTEiJ_G0027693.1 mouse_genomes_project 4 106849638 106857959 - Btf3l4 protein_coding processed_transcript MGP_CASTEiJ_T0066899.1 MGP_CASTEiJ_G0027693.1 mouse_genomes_project 4 106857467 106863375 - Btf3l4 protein_coding processed_transcript MGP_CASTEiJ_T0014324.1 MGP_CASTEiJ_G0012487.1 mouse_genomes_project 4 143033011 143035980 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014167.1 MGP_CASTEiJ_G0012330.1 mouse_genomes_project 4 85620816 85621091 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098381.1 MGP_CASTEiJ_G0035312.1 mouse_genomes_project 4 96384130 96384218 + pseudogene pseudogene MGP_CASTEiJ_T0014325.1 MGP_CASTEiJ_G0012488.1 mouse_genomes_project 4 143229512 143230073 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014002.1 MGP_CASTEiJ_G0012165.1 mouse_genomes_project 4 23398132 23398810 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099830.1 MGP_CASTEiJ_G0036743.1 mouse_genomes_project 4 125353706 125353812 - Gm25600 snRNA snRNA MGP_CASTEiJ_T0101090.1 MGP_CASTEiJ_G0038003.1 mouse_genomes_project 4 130816789 130816925 + Snora16a snoRNA snoRNA MGP_CASTEiJ_T0070093.1 MGP_CASTEiJ_G0028359.1 mouse_genomes_project 4 155827659 155852647 - MGP_CASTEiJ_P0070093 Ttll10 protein_coding protein_coding MGP_CASTEiJ_T0070094.1 MGP_CASTEiJ_G0028359.1 mouse_genomes_project 4 155827664 155844066 - MGP_CASTEiJ_P0070094 Ttll10 protein_coding protein_coding MGP_CASTEiJ_T0070095.1 MGP_CASTEiJ_G0028359.1 mouse_genomes_project 4 155828178 155843714 - MGP_CASTEiJ_P0070095 Ttll10 protein_coding protein_coding MGP_CASTEiJ_T0070096.1 MGP_CASTEiJ_G0028359.1 mouse_genomes_project 4 155828683 155837406 - Ttll10 protein_coding processed_transcript MGP_CASTEiJ_T0070097.1 MGP_CASTEiJ_G0028359.1 mouse_genomes_project 4 155835749 155852574 - Ttll10 protein_coding retained_intron MGP_CASTEiJ_T0070098.1 MGP_CASTEiJ_G0028359.1 mouse_genomes_project 4 155836481 155838267 - Ttll10 protein_coding processed_transcript MGP_CASTEiJ_T0070099.1 MGP_CASTEiJ_G0028359.1 mouse_genomes_project 4 155836491 155841217 - Ttll10 protein_coding processed_transcript MGP_CASTEiJ_T0070100.1 MGP_CASTEiJ_G0028359.1 mouse_genomes_project 4 155840031 155841185 - Ttll10 protein_coding retained_intron MGP_CASTEiJ_T0067042.1 MGP_CASTEiJ_G0027719.1 mouse_genomes_project 4 111499484 111543918 - protein_coding retained_intron MGP_CASTEiJ_T0014065.1 MGP_CASTEiJ_G0012228.1 mouse_genomes_project 4 44963611 44963974 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0068509.1 MGP_CASTEiJ_G0028035.1 mouse_genomes_project 4 132638300 132641499 - MGP_CASTEiJ_P0068509 protein_coding protein_coding MGP_CASTEiJ_T0068510.1 MGP_CASTEiJ_G0028035.1 mouse_genomes_project 4 132638362 132640745 - protein_coding retained_intron MGP_CASTEiJ_T0068511.1 MGP_CASTEiJ_G0028035.1 mouse_genomes_project 4 132638362 132640115 - protein_coding processed_transcript MGP_CASTEiJ_T0068512.1 MGP_CASTEiJ_G0028035.1 mouse_genomes_project 4 132638362 132640091 - protein_coding processed_transcript MGP_CASTEiJ_T0068513.1 MGP_CASTEiJ_G0028035.1 mouse_genomes_project 4 132638362 132641499 - protein_coding processed_transcript MGP_CASTEiJ_T0068514.1 MGP_CASTEiJ_G0028035.1 mouse_genomes_project 4 132638362 132640730 - MGP_CASTEiJ_P0068514 protein_coding protein_coding MGP_CASTEiJ_T0068515.1 MGP_CASTEiJ_G0028035.1 mouse_genomes_project 4 132638416 132640727 - protein_coding retained_intron MGP_CASTEiJ_T0068516.1 MGP_CASTEiJ_G0028035.1 mouse_genomes_project 4 132638426 132640697 - protein_coding retained_intron MGP_CASTEiJ_T0014063.1 MGP_CASTEiJ_G0012226.1 mouse_genomes_project 4 44135560 44138463 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014112.1 MGP_CASTEiJ_G0012275.1 mouse_genomes_project 4 61982272 61982631 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0007662.1 MGP_CASTEiJ_G0006279.1 mouse_genomes_project 4 53710633 53728378 - Gm12510 lincRNA lincRNA MGP_CASTEiJ_T0077007.1 MGP_CASTEiJ_G0029645.1 mouse_genomes_project 6 28346118 28349168 - MGP_CASTEiJ_P0077007 Klf14 protein_coding protein_coding MGP_CASTEiJ_T0004855.1 MGP_CASTEiJ_G0004172.1 mouse_genomes_project 6 83302602 83309256 - Gm15624 antisense antisense MGP_CASTEiJ_T0004856.1 MGP_CASTEiJ_G0004172.1 mouse_genomes_project 6 83305801 83309278 - Gm15624 antisense antisense MGP_CASTEiJ_T0004857.1 MGP_CASTEiJ_G0004172.1 mouse_genomes_project 6 83306263 83309077 - Gm15624 antisense antisense MGP_CASTEiJ_T0076968.1 MGP_CASTEiJ_G0029638.1 mouse_genomes_project 6 27961628 27985728 + MGP_CASTEiJ_P0076968 Cpa4 protein_coding protein_coding MGP_CASTEiJ_T0011315.1 MGP_CASTEiJ_G0009503.1 mouse_genomes_project 6 50612937 50613028 + Gm27695 misc_RNA misc_RNA MGP_CASTEiJ_T0004975.1 MGP_CASTEiJ_G0004255.1 mouse_genomes_project 6 144034494 144038518 - Gm28523 antisense antisense MGP_CASTEiJ_T0101152.1 MGP_CASTEiJ_G0038065.1 mouse_genomes_project 6 4673803 4673932 + Gm22276 snoRNA snoRNA MGP_CASTEiJ_T0002086.1 MGP_CASTEiJ_G0002006.1 mouse_genomes_project 6 136350904 136352758 + TEC TEC MGP_CASTEiJ_T0079992.1 MGP_CASTEiJ_G0030287.1 mouse_genomes_project 6 121926438 122060561 - MGP_CASTEiJ_P0079992 B4galnt3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079994.1 MGP_CASTEiJ_G0030287.1 mouse_genomes_project 6 121964551 122002764 - B4galnt3 protein_coding processed_transcript MGP_CASTEiJ_T0079995.1 MGP_CASTEiJ_G0030287.1 mouse_genomes_project 6 121964569 122060564 - MGP_CASTEiJ_P0079995 B4galnt3 protein_coding protein_coding MGP_CASTEiJ_T0079996.1 MGP_CASTEiJ_G0030287.1 mouse_genomes_project 6 121965284 122060525 - MGP_CASTEiJ_P0079996 B4galnt3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0081310.1 MGP_CASTEiJ_G0030580.1 mouse_genomes_project 6 152132013 152251631 - MGP_CASTEiJ_P0081310 Dennd5b protein_coding protein_coding MGP_CASTEiJ_T0081311.1 MGP_CASTEiJ_G0030580.1 mouse_genomes_project 6 152157329 152160780 - Dennd5b protein_coding retained_intron MGP_CASTEiJ_T0081312.1 MGP_CASTEiJ_G0030580.1 mouse_genomes_project 6 152157467 152251489 - Dennd5b protein_coding retained_intron MGP_CASTEiJ_T0081313.1 MGP_CASTEiJ_G0030580.1 mouse_genomes_project 6 152184191 152188974 - Dennd5b protein_coding retained_intron MGP_CASTEiJ_T0081314.1 MGP_CASTEiJ_G0030580.1 mouse_genomes_project 6 152216991 152231262 - MGP_CASTEiJ_P0081314 Dennd5b protein_coding protein_coding MGP_CASTEiJ_T0081315.1 MGP_CASTEiJ_G0030580.1 mouse_genomes_project 6 152217014 152251535 - MGP_CASTEiJ_P0081315 Dennd5b protein_coding protein_coding MGP_CASTEiJ_T0081316.1 MGP_CASTEiJ_G0030580.1 mouse_genomes_project 6 152232363 152235322 - Dennd5b protein_coding retained_intron MGP_CASTEiJ_T0081070.1 MGP_CASTEiJ_G0030542.1 mouse_genomes_project 6 145632731 145654136 - MGP_CASTEiJ_P0081070 Sult6b2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081071.1 MGP_CASTEiJ_G0030542.1 mouse_genomes_project 6 145633308 145654100 - MGP_CASTEiJ_P0081071 Sult6b2 protein_coding protein_coding MGP_CASTEiJ_T0078407.1 MGP_CASTEiJ_G0029992.1 mouse_genomes_project 6 82458307 82462563 + Tacr1 protein_coding retained_intron MGP_CASTEiJ_T0078408.1 MGP_CASTEiJ_G0029992.1 mouse_genomes_project 6 82460721 82635076 + MGP_CASTEiJ_P0078408 Tacr1 protein_coding protein_coding MGP_CASTEiJ_T0078409.1 MGP_CASTEiJ_G0029992.1 mouse_genomes_project 6 82460724 82635071 + MGP_CASTEiJ_P0078409 Tacr1 protein_coding protein_coding MGP_CASTEiJ_T0081258.1 MGP_CASTEiJ_G0030573.1 mouse_genomes_project 6 150551108 150586824 + MGP_CASTEiJ_P0081258 Ccdc91 protein_coding protein_coding MGP_CASTEiJ_T0081259.1 MGP_CASTEiJ_G0030573.1 mouse_genomes_project 6 150551151 150718378 + MGP_CASTEiJ_P0081259 Ccdc91 protein_coding protein_coding MGP_CASTEiJ_T0081260.1 MGP_CASTEiJ_G0030573.1 mouse_genomes_project 6 150551271 150611140 + MGP_CASTEiJ_P0081260 Ccdc91 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081261.1 MGP_CASTEiJ_G0030573.1 mouse_genomes_project 6 150608441 150619900 + Ccdc91 protein_coding processed_transcript MGP_CASTEiJ_T0078376.1 MGP_CASTEiJ_G0029983.1 mouse_genomes_project 6 78332426 78335379 + MGP_CASTEiJ_P0078376 Reg2 protein_coding protein_coding MGP_CASTEiJ_T0014778.1 MGP_CASTEiJ_G0012941.1 mouse_genomes_project 6 38893859 38894240 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000151.1 MGP_CASTEiJ_G0000115.1 mouse_genomes_project 6 67354146 67354617 + MGP_CASTEiJ_P0000151 Igkv14-126 IG_V_gene IG_V_gene MGP_CASTEiJ_T0014800.1 MGP_CASTEiJ_G0012963.1 mouse_genomes_project 6 47095566 47096242 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004958.1 MGP_CASTEiJ_G0004241.1 mouse_genomes_project 6 130837296 130909446 + Gm10069 antisense antisense MGP_CASTEiJ_T0004959.1 MGP_CASTEiJ_G0004241.1 mouse_genomes_project 6 130877713 130893961 + Gm10069 antisense antisense MGP_CASTEiJ_T0080735.1 MGP_CASTEiJ_G0030472.1 mouse_genomes_project 6 135491467 135492467 - MGP_CASTEiJ_P0080735 Tas2r140 protein_coding protein_coding MGP_CASTEiJ_T0079349.1 MGP_CASTEiJ_G0030177.1 mouse_genomes_project 6 103316099 103320246 - Cntn3 protein_coding retained_intron MGP_CASTEiJ_T0079350.1 MGP_CASTEiJ_G0030177.1 mouse_genomes_project 6 103316763 103614226 - MGP_CASTEiJ_P0079350 Cntn3 protein_coding protein_coding MGP_CASTEiJ_T0079351.1 MGP_CASTEiJ_G0030177.1 mouse_genomes_project 6 103316765 103614230 - MGP_CASTEiJ_P0079351 Cntn3 protein_coding protein_coding MGP_CASTEiJ_T0080925.1 MGP_CASTEiJ_G0030511.1 mouse_genomes_project 6 140624057 140703042 - Slc15a5 protein_coding retained_intron MGP_CASTEiJ_T0080926.1 MGP_CASTEiJ_G0030511.1 mouse_genomes_project 6 140624057 140707272 - MGP_CASTEiJ_P0080926 Slc15a5 protein_coding protein_coding MGP_CASTEiJ_T0080927.1 MGP_CASTEiJ_G0030511.1 mouse_genomes_project 6 140624817 140702751 - MGP_CASTEiJ_P0080927 Slc15a5 protein_coding protein_coding MGP_CASTEiJ_T0080928.1 MGP_CASTEiJ_G0030511.1 mouse_genomes_project 6 140660282 140671895 - MGP_CASTEiJ_P0080928 Slc15a5 protein_coding protein_coding MGP_CASTEiJ_T0080929.1 MGP_CASTEiJ_G0030511.1 mouse_genomes_project 6 140668290 140678740 - MGP_CASTEiJ_P0080929 Slc15a5 protein_coding protein_coding MGP_CASTEiJ_T0080930.1 MGP_CASTEiJ_G0030511.1 mouse_genomes_project 6 140672068 140692058 - Slc15a5 protein_coding retained_intron MGP_CASTEiJ_T0000167.1 MGP_CASTEiJ_G0000127.1 mouse_genomes_project 6 68185720 68186193 + MGP_CASTEiJ_P0000167 Igkv12-98 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000168.1 MGP_CASTEiJ_G0000127.1 mouse_genomes_project 6 68185720 68186193 + MGP_CASTEiJ_P0000168 Igkv12-98 IG_V_gene IG_V_gene MGP_CASTEiJ_T0004832.1 MGP_CASTEiJ_G0004154.1 mouse_genomes_project 6 57545702 57553132 + Gm45060 antisense antisense MGP_CASTEiJ_T0014786.1 MGP_CASTEiJ_G0012949.1 mouse_genomes_project 6 41751137 41753511 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014707.1 MGP_CASTEiJ_G0012870.1 mouse_genomes_project 6 3047256 3047631 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001991.1 MGP_CASTEiJ_G0001912.1 mouse_genomes_project 6 88004720 88007356 + TEC TEC MGP_CASTEiJ_T0078971.1 MGP_CASTEiJ_G0030101.1 mouse_genomes_project 6 89260619 89262184 + Mgll protein_coding processed_transcript MGP_CASTEiJ_T0078972.1 MGP_CASTEiJ_G0030101.1 mouse_genomes_project 6 89260630 89364816 + MGP_CASTEiJ_P0078972 Mgll protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078973.1 MGP_CASTEiJ_G0030101.1 mouse_genomes_project 6 89260643 89367411 + MGP_CASTEiJ_P0078973 Mgll protein_coding protein_coding MGP_CASTEiJ_T0078974.1 MGP_CASTEiJ_G0030101.1 mouse_genomes_project 6 89260745 89304842 + MGP_CASTEiJ_P0078974 Mgll protein_coding protein_coding MGP_CASTEiJ_T0078975.1 MGP_CASTEiJ_G0030101.1 mouse_genomes_project 6 89261226 89367297 + MGP_CASTEiJ_P0078975 Mgll protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078976.1 MGP_CASTEiJ_G0030101.1 mouse_genomes_project 6 89261300 89369791 + MGP_CASTEiJ_P0078976 Mgll protein_coding protein_coding MGP_CASTEiJ_T0078977.1 MGP_CASTEiJ_G0030101.1 mouse_genomes_project 6 89364562 89367260 + Mgll protein_coding retained_intron MGP_CASTEiJ_T0004835.1 MGP_CASTEiJ_G0004157.1 mouse_genomes_project 6 65099599 65110301 - Gm16838 antisense antisense MGP_CASTEiJ_T0079399.1 MGP_CASTEiJ_G0030187.1 mouse_genomes_project 6 109529959 109869554 + MGP_CASTEiJ_P0079399 Itpr1 protein_coding protein_coding MGP_CASTEiJ_T0079400.1 MGP_CASTEiJ_G0030187.1 mouse_genomes_project 6 109529961 109869562 + MGP_CASTEiJ_P0079400 Itpr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079401.1 MGP_CASTEiJ_G0030187.1 mouse_genomes_project 6 109530065 109869554 + MGP_CASTEiJ_P0079401 Itpr1 protein_coding protein_coding MGP_CASTEiJ_T0079402.1 MGP_CASTEiJ_G0030187.1 mouse_genomes_project 6 109575159 109708706 + Itpr1 protein_coding retained_intron MGP_CASTEiJ_T0079403.1 MGP_CASTEiJ_G0030187.1 mouse_genomes_project 6 109670551 109693518 + MGP_CASTEiJ_P0079403 Itpr1 protein_coding protein_coding MGP_CASTEiJ_T0079404.1 MGP_CASTEiJ_G0030187.1 mouse_genomes_project 6 109730919 109734711 + Itpr1 protein_coding retained_intron MGP_CASTEiJ_T0079405.1 MGP_CASTEiJ_G0030187.1 mouse_genomes_project 6 109732465 109758030 + MGP_CASTEiJ_P0079405 Itpr1 protein_coding protein_coding MGP_CASTEiJ_T0079406.1 MGP_CASTEiJ_G0030187.1 mouse_genomes_project 6 109732532 109790086 + MGP_CASTEiJ_P0079406 Itpr1 protein_coding protein_coding MGP_CASTEiJ_T0079407.1 MGP_CASTEiJ_G0030187.1 mouse_genomes_project 6 109733561 109757985 + MGP_CASTEiJ_P0079407 Itpr1 protein_coding protein_coding MGP_CASTEiJ_T0079408.1 MGP_CASTEiJ_G0030187.1 mouse_genomes_project 6 109776041 109787569 + Itpr1 protein_coding processed_transcript MGP_CASTEiJ_T0079409.1 MGP_CASTEiJ_G0030187.1 mouse_genomes_project 6 109825136 109829938 + Itpr1 protein_coding retained_intron MGP_CASTEiJ_T0079410.1 MGP_CASTEiJ_G0030187.1 mouse_genomes_project 6 109836984 109837928 + Itpr1 protein_coding retained_intron MGP_CASTEiJ_T0077983.1 MGP_CASTEiJ_G0029892.1 mouse_genomes_project 6 56074018 56101999 - MGP_CASTEiJ_P0077983 Ppm1k protein_coding protein_coding MGP_CASTEiJ_T0077984.1 MGP_CASTEiJ_G0029892.1 mouse_genomes_project 6 56081912 56083894 - MGP_CASTEiJ_P0077984 Ppm1k protein_coding protein_coding MGP_CASTEiJ_T0077985.1 MGP_CASTEiJ_G0029892.1 mouse_genomes_project 6 56101007 56102043 - Ppm1k protein_coding processed_transcript MGP_CASTEiJ_T0077981.1 MGP_CASTEiJ_G0029890.1 mouse_genomes_project 6 55920156 55921143 - MGP_CASTEiJ_P0077981 Vmn1r16 protein_coding protein_coding MGP_CASTEiJ_T0004869.1 MGP_CASTEiJ_G0004179.1 mouse_genomes_project 6 86466658 86469405 - Gm44089 antisense antisense MGP_CASTEiJ_T0076486.1 MGP_CASTEiJ_G0029551.1 mouse_genomes_project 6 6854469 6856618 - MGP_CASTEiJ_P0076486 protein_coding protein_coding MGP_CASTEiJ_T0000265.1 MGP_CASTEiJ_G0000214.1 mouse_genomes_project 6 67160707 67160960 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0004937.1 MGP_CASTEiJ_G0004222.1 mouse_genomes_project 6 122782926 122783889 + Gm43916 antisense antisense MGP_CASTEiJ_T0000278.1 MGP_CASTEiJ_G0000227.1 mouse_genomes_project 6 68244861 68245567 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0081203.1 MGP_CASTEiJ_G0030560.1 mouse_genomes_project 6 149639876 149673722 - MGP_CASTEiJ_P0081203 Tm7sf3 protein_coding protein_coding MGP_CASTEiJ_T0081204.1 MGP_CASTEiJ_G0030560.1 mouse_genomes_project 6 149648405 149673623 - MGP_CASTEiJ_P0081204 Tm7sf3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081205.1 MGP_CASTEiJ_G0030560.1 mouse_genomes_project 6 149657820 149681541 - Tm7sf3 protein_coding processed_transcript MGP_CASTEiJ_T0081206.1 MGP_CASTEiJ_G0030560.1 mouse_genomes_project 6 149659829 149681551 - Tm7sf3 protein_coding processed_transcript MGP_CASTEiJ_T0002038.1 MGP_CASTEiJ_G0001959.1 mouse_genomes_project 6 102484123 102484951 - TEC TEC MGP_CASTEiJ_T0008484.1 MGP_CASTEiJ_G0006869.1 mouse_genomes_project 6 114168158 114175961 + Gm26799 lincRNA lincRNA MGP_CASTEiJ_T0010486.1 MGP_CASTEiJ_G0008674.1 mouse_genomes_project 6 95467778 95467830 - Mir7041 miRNA miRNA MGP_CASTEiJ_T0098994.1 MGP_CASTEiJ_G0035914.1 mouse_genomes_project 6 88868200 88868667 - Gm44265 sense_intronic sense_intronic MGP_CASTEiJ_T0014900.1 MGP_CASTEiJ_G0013063.1 mouse_genomes_project 6 75959720 75960980 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080442.1 MGP_CASTEiJ_G0030379.1 mouse_genomes_project 6 127506063 127506737 + Tnfrsf1a protein_coding processed_transcript MGP_CASTEiJ_T0080443.1 MGP_CASTEiJ_G0030379.1 mouse_genomes_project 6 127506152 127517005 + MGP_CASTEiJ_P0080443 Tnfrsf1a protein_coding protein_coding MGP_CASTEiJ_T0080444.1 MGP_CASTEiJ_G0030379.1 mouse_genomes_project 6 127506424 127522182 + MGP_CASTEiJ_P0080444 Tnfrsf1a protein_coding protein_coding MGP_CASTEiJ_T0080445.1 MGP_CASTEiJ_G0030379.1 mouse_genomes_project 6 127517059 127520802 + MGP_CASTEiJ_P0080445 Tnfrsf1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080446.1 MGP_CASTEiJ_G0030379.1 mouse_genomes_project 6 127517461 127521475 + MGP_CASTEiJ_P0080446 Tnfrsf1a protein_coding protein_coding MGP_CASTEiJ_T0080447.1 MGP_CASTEiJ_G0030379.1 mouse_genomes_project 6 127520123 127521571 + Tnfrsf1a protein_coding retained_intron MGP_CASTEiJ_T0011339.1 MGP_CASTEiJ_G0009527.1 mouse_genomes_project 6 143285533 143285786 + Gm25780 misc_RNA misc_RNA MGP_CASTEiJ_T0014938.1 MGP_CASTEiJ_G0013101.1 mouse_genomes_project 6 92969278 92969434 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014710.1 MGP_CASTEiJ_G0012873.1 mouse_genomes_project 6 3163910 3164135 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002495.1 MGP_CASTEiJ_G0002404.1 mouse_genomes_project 6 39377086 39377135 + MGP_CASTEiJ_P0002495 Trbj2-3 TR_J_gene TR_J_gene MGP_CASTEiJ_T0008490.1 MGP_CASTEiJ_G0006875.1 mouse_genomes_project 6 118991966 118994984 - Gm4640 lincRNA lincRNA MGP_CASTEiJ_T0078576.1 MGP_CASTEiJ_G0030024.1 mouse_genomes_project 6 83851436 83857858 - MGP_CASTEiJ_P0078576 Cd207 protein_coding protein_coding MGP_CASTEiJ_T0014847.1 MGP_CASTEiJ_G0013010.1 mouse_genomes_project 6 64305693 64306260 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078009.1 MGP_CASTEiJ_G0029900.1 mouse_genomes_project 6 56458062 56458971 - MGP_CASTEiJ_P0078009 protein_coding protein_coding MGP_CASTEiJ_T0077915.1 MGP_CASTEiJ_G0029869.1 mouse_genomes_project 6 53847104 53861203 + MGP_CASTEiJ_P0077915 Aqp1 protein_coding protein_coding MGP_CASTEiJ_T0000165.1 MGP_CASTEiJ_G0000126.1 mouse_genomes_project 6 68150874 68151653 + MGP_CASTEiJ_P0000165 Igkv1-99 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000166.1 MGP_CASTEiJ_G0000126.1 mouse_genomes_project 6 68150888 68151653 + MGP_CASTEiJ_P0000166 Igkv1-99 IG_V_gene IG_V_gene MGP_CASTEiJ_T0010502.1 MGP_CASTEiJ_G0008690.1 mouse_genomes_project 6 121792129 121792214 - Mir706 miRNA miRNA MGP_CASTEiJ_T0014865.1 MGP_CASTEiJ_G0013028.1 mouse_genomes_project 6 65962844 65963599 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080278.1 MGP_CASTEiJ_G0030349.1 mouse_genomes_project 6 126873912 126883346 - MGP_CASTEiJ_P0080278 Lrrc23 protein_coding protein_coding MGP_CASTEiJ_T0080279.1 MGP_CASTEiJ_G0030349.1 mouse_genomes_project 6 126873918 126883355 - MGP_CASTEiJ_P0080279 Lrrc23 protein_coding protein_coding MGP_CASTEiJ_T0080280.1 MGP_CASTEiJ_G0030349.1 mouse_genomes_project 6 126874660 126878234 - Lrrc23 protein_coding retained_intron MGP_CASTEiJ_T0080281.1 MGP_CASTEiJ_G0030349.1 mouse_genomes_project 6 126881888 126883345 - MGP_CASTEiJ_P0080281 Lrrc23 protein_coding protein_coding MGP_CASTEiJ_T0080282.1 MGP_CASTEiJ_G0030349.1 mouse_genomes_project 6 126882528 126883332 - MGP_CASTEiJ_P0080282 Lrrc23 protein_coding protein_coding MGP_CASTEiJ_T0008472.1 MGP_CASTEiJ_G0006859.1 mouse_genomes_project 6 101581414 101588984 + 1700049E22Rik lincRNA lincRNA MGP_CASTEiJ_T0080648.1 MGP_CASTEiJ_G0030429.1 mouse_genomes_project 6 131982963 132006113 - MGP_CASTEiJ_P0080648 Olr1 protein_coding protein_coding MGP_CASTEiJ_T0080649.1 MGP_CASTEiJ_G0030429.1 mouse_genomes_project 6 131985324 132006055 - MGP_CASTEiJ_P0080649 Olr1 protein_coding protein_coding MGP_CASTEiJ_T0080650.1 MGP_CASTEiJ_G0030429.1 mouse_genomes_project 6 131985324 132006055 - MGP_CASTEiJ_P0080650 Olr1 protein_coding protein_coding MGP_CASTEiJ_T0080651.1 MGP_CASTEiJ_G0030429.1 mouse_genomes_project 6 131985363 131994455 - MGP_CASTEiJ_P0080651 Olr1 protein_coding protein_coding MGP_CASTEiJ_T0080652.1 MGP_CASTEiJ_G0030429.1 mouse_genomes_project 6 131998856 132006113 - MGP_CASTEiJ_P0080652 Olr1 protein_coding protein_coding MGP_CASTEiJ_T0077711.1 MGP_CASTEiJ_G0029824.1 mouse_genomes_project 6 47996833 48003648 + MGP_CASTEiJ_P0077711 Npy protein_coding protein_coding MGP_CASTEiJ_T0078742.1 MGP_CASTEiJ_G0030057.1 mouse_genomes_project 6 86389975 86394660 + Figla protein_coding processed_transcript MGP_CASTEiJ_T0078743.1 MGP_CASTEiJ_G0030057.1 mouse_genomes_project 6 86391037 86394870 + MGP_CASTEiJ_P0078743 Figla protein_coding protein_coding MGP_CASTEiJ_T0014876.1 MGP_CASTEiJ_G0013039.1 mouse_genomes_project 6 67153447 67153621 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078697.1 MGP_CASTEiJ_G0030044.1 mouse_genomes_project 6 85766357 85783077 - MGP_CASTEiJ_P0078697 Fbxo41 protein_coding unknown_likely_coding MGP_CASTEiJ_T0078698.1 MGP_CASTEiJ_G0030044.1 mouse_genomes_project 6 85766361 85806278 - MGP_CASTEiJ_P0078698 Fbxo41 protein_coding protein_coding MGP_CASTEiJ_T0078699.1 MGP_CASTEiJ_G0030044.1 mouse_genomes_project 6 85766365 85806170 - MGP_CASTEiJ_P0078699 Fbxo41 protein_coding protein_coding MGP_CASTEiJ_T0078700.1 MGP_CASTEiJ_G0030044.1 mouse_genomes_project 6 85766367 85806142 - MGP_CASTEiJ_P0078700 Fbxo41 protein_coding protein_coding MGP_CASTEiJ_T0014845.1 MGP_CASTEiJ_G0013008.1 mouse_genomes_project 6 64186168 64186838 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079881.1 MGP_CASTEiJ_G0030275.1 mouse_genomes_project 6 120148672 120216835 - MGP_CASTEiJ_P0079881 Ankrd26 protein_coding protein_coding MGP_CASTEiJ_T0079882.1 MGP_CASTEiJ_G0030275.1 mouse_genomes_project 6 120170508 120175548 - Ankrd26 protein_coding retained_intron MGP_CASTEiJ_T0079883.1 MGP_CASTEiJ_G0030275.1 mouse_genomes_project 6 120197434 120203677 - Ankrd26 protein_coding retained_intron MGP_CASTEiJ_T0080390.1 MGP_CASTEiJ_G0030369.1 mouse_genomes_project 6 127274471 127297322 + Iffo1 protein_coding retained_intron MGP_CASTEiJ_T0080391.1 MGP_CASTEiJ_G0030369.1 mouse_genomes_project 6 127274471 127297322 + MGP_CASTEiJ_P0080391 Iffo1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080392.1 MGP_CASTEiJ_G0030369.1 mouse_genomes_project 6 127274471 127297322 + MGP_CASTEiJ_P0080392 Iffo1 protein_coding protein_coding MGP_CASTEiJ_T0080393.1 MGP_CASTEiJ_G0030369.1 mouse_genomes_project 6 127274481 127297316 + MGP_CASTEiJ_P0080393 Iffo1 protein_coding protein_coding MGP_CASTEiJ_T0080394.1 MGP_CASTEiJ_G0030369.1 mouse_genomes_project 6 127274496 127297316 + Iffo1 protein_coding retained_intron MGP_CASTEiJ_T0080395.1 MGP_CASTEiJ_G0030369.1 mouse_genomes_project 6 127275031 127297316 + MGP_CASTEiJ_P0080395 Iffo1 protein_coding protein_coding MGP_CASTEiJ_T0080396.1 MGP_CASTEiJ_G0030369.1 mouse_genomes_project 6 127275256 127297316 + Iffo1 protein_coding retained_intron MGP_CASTEiJ_T0080397.1 MGP_CASTEiJ_G0030369.1 mouse_genomes_project 6 127278236 127280772 + Iffo1 protein_coding processed_transcript MGP_CASTEiJ_T0080398.1 MGP_CASTEiJ_G0030369.1 mouse_genomes_project 6 127278757 127282015 + Iffo1 protein_coding retained_intron MGP_CASTEiJ_T0080399.1 MGP_CASTEiJ_G0030369.1 mouse_genomes_project 6 127282632 127296597 + Iffo1 protein_coding retained_intron MGP_CASTEiJ_T0002010.1 MGP_CASTEiJ_G0001931.1 mouse_genomes_project 6 91817176 91817770 - TEC TEC MGP_CASTEiJ_T0077808.1 MGP_CASTEiJ_G0029849.1 mouse_genomes_project 6 50935692 51038942 - MGP_CASTEiJ_P0077808 Hibadh protein_coding protein_coding MGP_CASTEiJ_T0077809.1 MGP_CASTEiJ_G0029849.1 mouse_genomes_project 6 50936170 51028212 - Hibadh protein_coding retained_intron MGP_CASTEiJ_T0077810.1 MGP_CASTEiJ_G0029849.1 mouse_genomes_project 6 50938270 50947302 - Hibadh protein_coding retained_intron MGP_CASTEiJ_T0077811.1 MGP_CASTEiJ_G0029849.1 mouse_genomes_project 6 50944791 50946892 - Hibadh protein_coding retained_intron MGP_CASTEiJ_T0077812.1 MGP_CASTEiJ_G0029849.1 mouse_genomes_project 6 51032171 51038868 - Hibadh protein_coding retained_intron MGP_CASTEiJ_T0000152.1 MGP_CASTEiJ_G0000116.1 mouse_genomes_project 6 67401624 67402104 + MGP_CASTEiJ_P0000152 Igkv11-125 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000153.1 MGP_CASTEiJ_G0000116.1 mouse_genomes_project 6 67401624 67402104 + MGP_CASTEiJ_P0000153 Igkv11-125 IG_V_gene IG_V_gene MGP_CASTEiJ_T0015100.1 MGP_CASTEiJ_G0013263.1 mouse_genomes_project 6 151341975 151342378 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079580.1 MGP_CASTEiJ_G0030217.1 mouse_genomes_project 6 115058930 115131137 + MGP_CASTEiJ_P0079580 Fancd2 protein_coding protein_coding MGP_CASTEiJ_T0079581.1 MGP_CASTEiJ_G0030217.1 mouse_genomes_project 6 115058952 115065956 + Fancd2 protein_coding retained_intron MGP_CASTEiJ_T0079582.1 MGP_CASTEiJ_G0030217.1 mouse_genomes_project 6 115058952 115065071 + Fancd2 protein_coding retained_intron MGP_CASTEiJ_T0079583.1 MGP_CASTEiJ_G0030217.1 mouse_genomes_project 6 115058952 115130393 + MGP_CASTEiJ_P0079583 Fancd2 protein_coding protein_coding MGP_CASTEiJ_T0079584.1 MGP_CASTEiJ_G0030217.1 mouse_genomes_project 6 115081947 115084135 + Fancd2 protein_coding retained_intron MGP_CASTEiJ_T0079585.1 MGP_CASTEiJ_G0030217.1 mouse_genomes_project 6 115081951 115092377 + MGP_CASTEiJ_P0079585 Fancd2 protein_coding protein_coding MGP_CASTEiJ_T0079586.1 MGP_CASTEiJ_G0030217.1 mouse_genomes_project 6 115098556 115104350 + MGP_CASTEiJ_P0079586 Fancd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079587.1 MGP_CASTEiJ_G0030217.1 mouse_genomes_project 6 115114892 115117465 + Fancd2 protein_coding retained_intron MGP_CASTEiJ_T0080481.1 MGP_CASTEiJ_G0030388.1 mouse_genomes_project 6 129054052 129081413 - MGP_CASTEiJ_P0080481 Ndufa9 protein_coding protein_coding MGP_CASTEiJ_T0080482.1 MGP_CASTEiJ_G0030388.1 mouse_genomes_project 6 129054282 129081412 - MGP_CASTEiJ_P0080482 Ndufa9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0080483.1 MGP_CASTEiJ_G0030388.1 mouse_genomes_project 6 129054327 129081413 - MGP_CASTEiJ_P0080483 Ndufa9 protein_coding protein_coding MGP_CASTEiJ_T0080484.1 MGP_CASTEiJ_G0030388.1 mouse_genomes_project 6 129076052 129081424 - Ndufa9 protein_coding retained_intron MGP_CASTEiJ_T0014965.1 MGP_CASTEiJ_G0013128.1 mouse_genomes_project 6 103815442 103817533 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008481.1 MGP_CASTEiJ_G0006866.1 mouse_genomes_project 6 108481626 108593885 - Gm44398 lincRNA lincRNA MGP_CASTEiJ_T0001949.1 MGP_CASTEiJ_G0001870.1 mouse_genomes_project 6 72941163 72943155 + TEC TEC MGP_CASTEiJ_T0015060.1 MGP_CASTEiJ_G0013223.1 mouse_genomes_project 6 133904807 133905098 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000270.1 MGP_CASTEiJ_G0000219.1 mouse_genomes_project 6 67653445 67654135 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0014821.1 MGP_CASTEiJ_G0012984.1 mouse_genomes_project 6 51591380 51592566 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078952.1 MGP_CASTEiJ_G0030099.1 mouse_genomes_project 6 89027098 89043542 - MGP_CASTEiJ_P0078952 Sec61a1 protein_coding protein_coding MGP_CASTEiJ_T0078953.1 MGP_CASTEiJ_G0030099.1 mouse_genomes_project 6 89028320 89029895 - Sec61a1 protein_coding processed_transcript MGP_CASTEiJ_T0078954.1 MGP_CASTEiJ_G0030099.1 mouse_genomes_project 6 89029692 89037039 - Sec61a1 protein_coding processed_transcript MGP_CASTEiJ_T0078955.1 MGP_CASTEiJ_G0030099.1 mouse_genomes_project 6 89029852 89038528 - Sec61a1 protein_coding retained_intron MGP_CASTEiJ_T0078956.1 MGP_CASTEiJ_G0030099.1 mouse_genomes_project 6 89032204 89037357 - Sec61a1 protein_coding retained_intron MGP_CASTEiJ_T0078957.1 MGP_CASTEiJ_G0030099.1 mouse_genomes_project 6 89036672 89037429 - Sec61a1 protein_coding retained_intron MGP_CASTEiJ_T0078958.1 MGP_CASTEiJ_G0030099.1 mouse_genomes_project 6 89038437 89043410 - Sec61a1 protein_coding retained_intron MGP_CASTEiJ_T0078959.1 MGP_CASTEiJ_G0030099.1 mouse_genomes_project 6 89038833 89040607 - Sec61a1 protein_coding retained_intron MGP_CASTEiJ_T0078960.1 MGP_CASTEiJ_G0030099.1 mouse_genomes_project 6 89039952 89043465 - Sec61a1 protein_coding retained_intron MGP_CASTEiJ_T0078961.1 MGP_CASTEiJ_G0030099.1 mouse_genomes_project 6 89039990 89043428 - Sec61a1 protein_coding processed_transcript MGP_CASTEiJ_T0078962.1 MGP_CASTEiJ_G0030099.1 mouse_genomes_project 6 89040010 89043540 - Sec61a1 protein_coding retained_intron MGP_CASTEiJ_T0078963.1 MGP_CASTEiJ_G0030099.1 mouse_genomes_project 6 89042814 89043430 - Sec61a1 protein_coding processed_transcript MGP_CASTEiJ_T0080171.1 MGP_CASTEiJ_G0030325.1 mouse_genomes_project 6 124911089 124928682 + MGP_CASTEiJ_P0080171 Clec4a4 protein_coding protein_coding MGP_CASTEiJ_T0102443.1 MGP_CASTEiJ_G0039168.1 mouse_genomes_project 6 135731577 135733212 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008505.1 MGP_CASTEiJ_G0006888.1 mouse_genomes_project 6 126373235 126375975 + Gm43971 lincRNA lincRNA MGP_CASTEiJ_T0077315.1 MGP_CASTEiJ_G0029703.1 mouse_genomes_project 6 38193239 38266832 + MGP_CASTEiJ_P0077315 Agk protein_coding protein_coding MGP_CASTEiJ_T0077316.1 MGP_CASTEiJ_G0029703.1 mouse_genomes_project 6 38193552 38238914 + Agk protein_coding retained_intron MGP_CASTEiJ_T0077317.1 MGP_CASTEiJ_G0029703.1 mouse_genomes_project 6 38193554 38194835 + Agk protein_coding retained_intron MGP_CASTEiJ_T0077318.1 MGP_CASTEiJ_G0029703.1 mouse_genomes_project 6 38193575 38219496 + Agk protein_coding retained_intron MGP_CASTEiJ_T0077319.1 MGP_CASTEiJ_G0029703.1 mouse_genomes_project 6 38199543 38218145 + Agk protein_coding processed_transcript MGP_CASTEiJ_T0077320.1 MGP_CASTEiJ_G0029703.1 mouse_genomes_project 6 38199543 38227560 + MGP_CASTEiJ_P0077320 Agk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077321.1 MGP_CASTEiJ_G0029703.1 mouse_genomes_project 6 38220040 38223043 + Agk protein_coding retained_intron MGP_CASTEiJ_T0077322.1 MGP_CASTEiJ_G0029703.1 mouse_genomes_project 6 38246064 38265838 + Agk protein_coding retained_intron MGP_CASTEiJ_T0076791.1 MGP_CASTEiJ_G0029612.1 mouse_genomes_project 6 26389795 26432989 - MGP_CASTEiJ_P0076791 Rbm28 protein_coding protein_coding MGP_CASTEiJ_T0076792.1 MGP_CASTEiJ_G0029612.1 mouse_genomes_project 6 26391207 26421495 - Rbm28 protein_coding retained_intron MGP_CASTEiJ_T0076793.1 MGP_CASTEiJ_G0029612.1 mouse_genomes_project 6 26391241 26397316 - MGP_CASTEiJ_P0076793 Rbm28 protein_coding protein_coding MGP_CASTEiJ_T0076794.1 MGP_CASTEiJ_G0029612.1 mouse_genomes_project 6 26403475 26419245 - Rbm28 protein_coding retained_intron MGP_CASTEiJ_T0076795.1 MGP_CASTEiJ_G0029612.1 mouse_genomes_project 6 26423089 26426537 - Rbm28 protein_coding retained_intron MGP_CASTEiJ_T0076796.1 MGP_CASTEiJ_G0029612.1 mouse_genomes_project 6 26423420 26426312 - Rbm28 protein_coding retained_intron MGP_CASTEiJ_T0008407.1 MGP_CASTEiJ_G0006810.1 mouse_genomes_project 6 65839924 65847702 - lincRNA lincRNA MGP_CASTEiJ_T0008408.1 MGP_CASTEiJ_G0006810.1 mouse_genomes_project 6 65842167 65847744 - lincRNA lincRNA MGP_CASTEiJ_T0001966.1 MGP_CASTEiJ_G0001887.1 mouse_genomes_project 6 80409471 80415720 + TEC TEC MGP_CASTEiJ_T0080813.1 MGP_CASTEiJ_G0030490.1 mouse_genomes_project 6 137629697 137640406 - MGP_CASTEiJ_P0080813 Gsg1 protein_coding protein_coding MGP_CASTEiJ_T0080814.1 MGP_CASTEiJ_G0030490.1 mouse_genomes_project 6 137629700 137646617 - MGP_CASTEiJ_P0080814 Gsg1 protein_coding protein_coding MGP_CASTEiJ_T0080815.1 MGP_CASTEiJ_G0030490.1 mouse_genomes_project 6 137629700 137646773 - MGP_CASTEiJ_P0080815 Gsg1 protein_coding protein_coding MGP_CASTEiJ_T0080816.1 MGP_CASTEiJ_G0030490.1 mouse_genomes_project 6 137629707 137646798 - MGP_CASTEiJ_P0080816 Gsg1 protein_coding protein_coding MGP_CASTEiJ_T0008393.1 MGP_CASTEiJ_G0006797.1 mouse_genomes_project 6 50875984 50883706 + 1700094M24Rik lincRNA lincRNA MGP_CASTEiJ_T0015027.1 MGP_CASTEiJ_G0013190.1 mouse_genomes_project 6 125892693 125893540 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101212.1 MGP_CASTEiJ_G0038125.1 mouse_genomes_project 6 126814868 126815133 + Gm23547 snoRNA snoRNA MGP_CASTEiJ_T0079808.1 MGP_CASTEiJ_G0030256.1 mouse_genomes_project 6 118114130 118115606 + MGP_CASTEiJ_P0079808 protein_coding protein_coding MGP_CASTEiJ_T0002018.1 MGP_CASTEiJ_G0001939.1 mouse_genomes_project 6 92618107 92619365 - TEC TEC MGP_CASTEiJ_T0001875.1 MGP_CASTEiJ_G0001796.1 mouse_genomes_project 6 26855583 26857125 - TEC TEC MGP_CASTEiJ_T0098991.1 MGP_CASTEiJ_G0035911.1 mouse_genomes_project 6 46104449 46104857 - sense_intronic sense_intronic MGP_CASTEiJ_T0080911.1 MGP_CASTEiJ_G0030510.1 mouse_genomes_project 6 140369848 140377898 + Dera protein_coding processed_transcript MGP_CASTEiJ_T0080912.1 MGP_CASTEiJ_G0030510.1 mouse_genomes_project 6 140369848 140400176 + Dera protein_coding retained_intron MGP_CASTEiJ_T0080913.1 MGP_CASTEiJ_G0030510.1 mouse_genomes_project 6 140369858 140462933 + MGP_CASTEiJ_P0080913 Dera protein_coding protein_coding MGP_CASTEiJ_T0080914.1 MGP_CASTEiJ_G0030510.1 mouse_genomes_project 6 140369860 140463372 + MGP_CASTEiJ_P0080914 Dera protein_coding protein_coding MGP_CASTEiJ_T0080915.1 MGP_CASTEiJ_G0030510.1 mouse_genomes_project 6 140369878 140482077 + MGP_CASTEiJ_P0080915 Dera protein_coding protein_coding MGP_CASTEiJ_T0080916.1 MGP_CASTEiJ_G0030510.1 mouse_genomes_project 6 140369893 140381008 + Dera protein_coding processed_transcript MGP_CASTEiJ_T0080917.1 MGP_CASTEiJ_G0030510.1 mouse_genomes_project 6 140369917 140462912 + MGP_CASTEiJ_P0080917 Dera protein_coding protein_coding MGP_CASTEiJ_T0080918.1 MGP_CASTEiJ_G0030510.1 mouse_genomes_project 6 140377601 140377899 + Dera protein_coding TEC MGP_CASTEiJ_T0080919.1 MGP_CASTEiJ_G0030510.1 mouse_genomes_project 6 140390271 140401005 + Dera protein_coding processed_transcript MGP_CASTEiJ_T0080920.1 MGP_CASTEiJ_G0030510.1 mouse_genomes_project 6 140395893 140397561 + Dera protein_coding retained_intron MGP_CASTEiJ_T0080921.1 MGP_CASTEiJ_G0030510.1 mouse_genomes_project 6 140398734 140462959 + MGP_CASTEiJ_P0080921 Dera protein_coding protein_coding MGP_CASTEiJ_T0080922.1 MGP_CASTEiJ_G0030510.1 mouse_genomes_project 6 140415948 140428648 + Dera protein_coding processed_transcript MGP_CASTEiJ_T0080923.1 MGP_CASTEiJ_G0030510.1 mouse_genomes_project 6 140451159 140481549 + MGP_CASTEiJ_P0080923 Dera protein_coding protein_coding MGP_CASTEiJ_T0080924.1 MGP_CASTEiJ_G0030510.1 mouse_genomes_project 6 140459514 140463558 + Dera protein_coding retained_intron MGP_CASTEiJ_T0011332.1 MGP_CASTEiJ_G0009520.1 mouse_genomes_project 6 113061263 113061559 + Gm24005 misc_RNA misc_RNA MGP_CASTEiJ_T0002081.1 MGP_CASTEiJ_G0002001.1 mouse_genomes_project 6 132023148 132026135 + TEC TEC MGP_CASTEiJ_T0081065.1 MGP_CASTEiJ_G0030541.1 mouse_genomes_project 6 145604434 145623485 + MGP_CASTEiJ_P0081065 Cmas protein_coding protein_coding MGP_CASTEiJ_T0081066.1 MGP_CASTEiJ_G0030541.1 mouse_genomes_project 6 145604475 145618363 + MGP_CASTEiJ_P0081066 Cmas protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081067.1 MGP_CASTEiJ_G0030541.1 mouse_genomes_project 6 145604485 145622430 + MGP_CASTEiJ_P0081067 Cmas protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081068.1 MGP_CASTEiJ_G0030541.1 mouse_genomes_project 6 145604496 145619983 + MGP_CASTEiJ_P0081068 Cmas protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081069.1 MGP_CASTEiJ_G0030541.1 mouse_genomes_project 6 145617738 145619074 + Cmas protein_coding retained_intron MGP_CASTEiJ_T0004847.1 MGP_CASTEiJ_G0004167.1 mouse_genomes_project 6 79879773 79969554 - Gm4409 antisense antisense MGP_CASTEiJ_T0010489.1 MGP_CASTEiJ_G0008677.1 mouse_genomes_project 6 100471395 100471507 - Gm22328 miRNA miRNA MGP_CASTEiJ_T0078047.1 MGP_CASTEiJ_G0029912.1 mouse_genomes_project 6 57804320 57807484 + MGP_CASTEiJ_P0078047 Tigd2 protein_coding protein_coding MGP_CASTEiJ_T0008321.1 MGP_CASTEiJ_G0006750.1 mouse_genomes_project 6 28293705 28332772 + 4930412F09Rik lincRNA lincRNA MGP_CASTEiJ_T0017535.1 MGP_CASTEiJ_G0014955.1 mouse_genomes_project 6 66410241 66460238 + E230016M11Rik processed_transcript bidirectional_promoter_lncRNA MGP_CASTEiJ_T0017536.1 MGP_CASTEiJ_G0014955.1 mouse_genomes_project 6 66410247 66440059 + E230016M11Rik processed_transcript bidirectional_promoter_lncRNA MGP_CASTEiJ_T0017537.1 MGP_CASTEiJ_G0014955.1 mouse_genomes_project 6 66410297 66459723 + E230016M11Rik processed_transcript retained_intron MGP_CASTEiJ_T0017538.1 MGP_CASTEiJ_G0014955.1 mouse_genomes_project 6 66455797 66459681 + E230016M11Rik processed_transcript retained_intron MGP_CASTEiJ_T0015105.1 MGP_CASTEiJ_G0013268.1 mouse_genomes_project 6 152534695 152535095 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002001.1 MGP_CASTEiJ_G0001922.1 mouse_genomes_project 6 89274381 89277543 + TEC TEC MGP_CASTEiJ_T0002072.1 MGP_CASTEiJ_G0001992.1 mouse_genomes_project 6 129579811 129580181 - TEC TEC MGP_CASTEiJ_T0102374.1 MGP_CASTEiJ_G0039099.1 mouse_genomes_project 6 36283525 36287763 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0079374.1 MGP_CASTEiJ_G0030181.1 mouse_genomes_project 6 108015857 108058644 - MGP_CASTEiJ_P0079374 Il5ra protein_coding protein_coding MGP_CASTEiJ_T0079375.1 MGP_CASTEiJ_G0030181.1 mouse_genomes_project 6 108016106 108058555 - MGP_CASTEiJ_P0079375 Il5ra protein_coding protein_coding MGP_CASTEiJ_T0079376.1 MGP_CASTEiJ_G0030181.1 mouse_genomes_project 6 108017475 108054409 - MGP_CASTEiJ_P0079376 Il5ra protein_coding protein_coding MGP_CASTEiJ_T0004976.1 MGP_CASTEiJ_G0004256.1 mouse_genomes_project 6 145447498 145459654 + 5330439B14Rik antisense antisense MGP_CASTEiJ_T0077605.1 MGP_CASTEiJ_G0029798.1 mouse_genomes_project 6 46711491 46716676 + MGP_CASTEiJ_P0077605 Repin1 protein_coding protein_coding MGP_CASTEiJ_T0077606.1 MGP_CASTEiJ_G0029798.1 mouse_genomes_project 6 46711491 46716676 + MGP_CASTEiJ_P0077606 Repin1 protein_coding protein_coding MGP_CASTEiJ_T0077607.1 MGP_CASTEiJ_G0029798.1 mouse_genomes_project 6 46711491 46714983 + MGP_CASTEiJ_P0077607 Repin1 protein_coding protein_coding MGP_CASTEiJ_T0077608.1 MGP_CASTEiJ_G0029798.1 mouse_genomes_project 6 46711499 46716677 + MGP_CASTEiJ_P0077608 Repin1 protein_coding protein_coding MGP_CASTEiJ_T0077609.1 MGP_CASTEiJ_G0029798.1 mouse_genomes_project 6 46711508 46716676 + MGP_CASTEiJ_P0077609 Repin1 protein_coding protein_coding MGP_CASTEiJ_T0077610.1 MGP_CASTEiJ_G0029798.1 mouse_genomes_project 6 46711548 46712940 + Repin1 protein_coding retained_intron MGP_CASTEiJ_T0077613.1 MGP_CASTEiJ_G0029798.1 mouse_genomes_project 6 46711925 46714219 + Repin1 protein_coding retained_intron MGP_CASTEiJ_T0101210.1 MGP_CASTEiJ_G0038123.1 mouse_genomes_project 6 126198567 126198677 + Gm23554 snoRNA snoRNA MGP_CASTEiJ_T0078858.1 MGP_CASTEiJ_G0030076.1 mouse_genomes_project 6 87584565 87795345 - MGP_CASTEiJ_P0078858 Antxr1 protein_coding protein_coding MGP_CASTEiJ_T0078859.1 MGP_CASTEiJ_G0030076.1 mouse_genomes_project 6 87584568 87764589 - MGP_CASTEiJ_P0078859 Antxr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078860.1 MGP_CASTEiJ_G0030076.1 mouse_genomes_project 6 87613837 87795305 - MGP_CASTEiJ_P0078860 Antxr1 protein_coding protein_coding MGP_CASTEiJ_T0078861.1 MGP_CASTEiJ_G0030076.1 mouse_genomes_project 6 87638681 87795345 - MGP_CASTEiJ_P0078861 Antxr1 protein_coding protein_coding MGP_CASTEiJ_T0078862.1 MGP_CASTEiJ_G0030076.1 mouse_genomes_project 6 87658000 87726396 - Antxr1 protein_coding processed_transcript MGP_CASTEiJ_T0078863.1 MGP_CASTEiJ_G0030076.1 mouse_genomes_project 6 87736775 87795402 - Antxr1 protein_coding retained_intron MGP_CASTEiJ_T0000269.1 MGP_CASTEiJ_G0000218.1 mouse_genomes_project 6 67627057 67627514 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0078179.1 MGP_CASTEiJ_G0029944.1 mouse_genomes_project 6 70824217 70839323 + MGP_CASTEiJ_P0078179 Krcc1 protein_coding protein_coding MGP_CASTEiJ_T0078180.1 MGP_CASTEiJ_G0029944.1 mouse_genomes_project 6 70824241 70838244 + MGP_CASTEiJ_P0078180 Krcc1 protein_coding protein_coding MGP_CASTEiJ_T0078181.1 MGP_CASTEiJ_G0029944.1 mouse_genomes_project 6 70824559 70839323 + MGP_CASTEiJ_P0078181 Krcc1 protein_coding protein_coding MGP_CASTEiJ_T0078182.1 MGP_CASTEiJ_G0029944.1 mouse_genomes_project 6 70836285 70839322 + MGP_CASTEiJ_P0078182 Krcc1 protein_coding protein_coding MGP_CASTEiJ_T0000155.1 MGP_CASTEiJ_G0000118.1 mouse_genomes_project 6 67434199 67434486 - MGP_CASTEiJ_P0000155 IG_V_gene IG_V_gene MGP_CASTEiJ_T0080724.1 MGP_CASTEiJ_G0030461.1 mouse_genomes_project 6 135227711 135228695 - MGP_CASTEiJ_P0080724 Tas2r136 protein_coding protein_coding MGP_CASTEiJ_T0000146.1 MGP_CASTEiJ_G0000112.1 mouse_genomes_project 6 67165658 67166372 + MGP_CASTEiJ_P0000146 Igkv1-132 IG_V_gene IG_V_gene MGP_CASTEiJ_T0001933.1 MGP_CASTEiJ_G0001854.1 mouse_genomes_project 6 70635889 70636815 - TEC TEC MGP_CASTEiJ_T0079538.1 MGP_CASTEiJ_G0030209.1 mouse_genomes_project 6 114927260 114931285 - MGP_CASTEiJ_P0079538 Rpusd3 protein_coding protein_coding MGP_CASTEiJ_T0079539.1 MGP_CASTEiJ_G0030209.1 mouse_genomes_project 6 114927270 114931264 - MGP_CASTEiJ_P0079539 Rpusd3 protein_coding protein_coding MGP_CASTEiJ_T0079540.1 MGP_CASTEiJ_G0030209.1 mouse_genomes_project 6 114927489 114928394 - Rpusd3 protein_coding retained_intron MGP_CASTEiJ_T0079541.1 MGP_CASTEiJ_G0030209.1 mouse_genomes_project 6 114928047 114931264 - MGP_CASTEiJ_P0079541 Rpusd3 protein_coding protein_coding MGP_CASTEiJ_T0079542.1 MGP_CASTEiJ_G0030209.1 mouse_genomes_project 6 114928251 114931255 - MGP_CASTEiJ_P0079542 Rpusd3 protein_coding protein_coding MGP_CASTEiJ_T0079543.1 MGP_CASTEiJ_G0030209.1 mouse_genomes_project 6 114928730 114931264 - Rpusd3 protein_coding retained_intron MGP_CASTEiJ_T0079544.1 MGP_CASTEiJ_G0030209.1 mouse_genomes_project 6 114928835 114931259 - MGP_CASTEiJ_P0079544 Rpusd3 protein_coding protein_coding MGP_CASTEiJ_T0079545.1 MGP_CASTEiJ_G0030209.1 mouse_genomes_project 6 114929137 114930993 - Rpusd3 protein_coding retained_intron MGP_CASTEiJ_T0079546.1 MGP_CASTEiJ_G0030209.1 mouse_genomes_project 6 114929164 114931276 - MGP_CASTEiJ_P0079546 Rpusd3 protein_coding protein_coding MGP_CASTEiJ_T0079547.1 MGP_CASTEiJ_G0030209.1 mouse_genomes_project 6 114930245 114931268 - Rpusd3 protein_coding retained_intron MGP_CASTEiJ_T0081075.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145876068 145971952 - MGP_CASTEiJ_P0081075 C2cd5 protein_coding protein_coding MGP_CASTEiJ_T0081076.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145876068 145971952 - MGP_CASTEiJ_P0081076 C2cd5 protein_coding protein_coding MGP_CASTEiJ_T0081077.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145876073 145971935 - MGP_CASTEiJ_P0081077 C2cd5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081078.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145876076 145971598 - MGP_CASTEiJ_P0081078 C2cd5 protein_coding protein_coding MGP_CASTEiJ_T0081079.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145876630 145971589 - MGP_CASTEiJ_P0081079 C2cd5 protein_coding protein_coding MGP_CASTEiJ_T0081080.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145876875 145971636 - MGP_CASTEiJ_P0081080 C2cd5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0081081.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145876881 145971916 - MGP_CASTEiJ_P0081081 C2cd5 protein_coding protein_coding MGP_CASTEiJ_T0081082.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145876887 145880415 - C2cd5 protein_coding retained_intron MGP_CASTEiJ_T0081083.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145877085 145971850 - MGP_CASTEiJ_P0081083 C2cd5 protein_coding protein_coding MGP_CASTEiJ_T0081084.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145886445 145889438 - C2cd5 protein_coding retained_intron MGP_CASTEiJ_T0081085.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145895633 145971952 - C2cd5 protein_coding retained_intron MGP_CASTEiJ_T0081086.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145909677 145938829 - MGP_CASTEiJ_P0081086 C2cd5 protein_coding protein_coding MGP_CASTEiJ_T0081087.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145916107 145919452 - C2cd5 protein_coding retained_intron MGP_CASTEiJ_T0081088.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145942431 145971671 - C2cd5 protein_coding retained_intron MGP_CASTEiJ_T0081089.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145944504 145953244 - C2cd5 protein_coding processed_transcript MGP_CASTEiJ_T0081090.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145949855 145951835 - C2cd5 protein_coding retained_intron MGP_CASTEiJ_T0081091.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145950222 145971986 - MGP_CASTEiJ_P0081091 C2cd5 protein_coding protein_coding MGP_CASTEiJ_T0081092.1 MGP_CASTEiJ_G0030544.1 mouse_genomes_project 6 145954674 145971923 - C2cd5 protein_coding retained_intron MGP_CASTEiJ_T0015031.1 MGP_CASTEiJ_G0013194.1 mouse_genomes_project 6 127073219 127073669 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014816.1 MGP_CASTEiJ_G0012979.1 mouse_genomes_project 6 50488816 50489085 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008546.1 MGP_CASTEiJ_G0006915.1 mouse_genomes_project 6 146421618 146423169 - 4930579D09Rik lincRNA lincRNA MGP_CASTEiJ_T0080449.1 MGP_CASTEiJ_G0030381.1 mouse_genomes_project 6 127615001 127653055 - MGP_CASTEiJ_P0080449 Cd9 protein_coding protein_coding MGP_CASTEiJ_T0080450.1 MGP_CASTEiJ_G0030381.1 mouse_genomes_project 6 127615325 127633044 - Cd9 protein_coding processed_transcript MGP_CASTEiJ_T0080451.1 MGP_CASTEiJ_G0030381.1 mouse_genomes_project 6 127616849 127617755 - Cd9 protein_coding retained_intron MGP_CASTEiJ_T0078536.1 MGP_CASTEiJ_G0030017.1 mouse_genomes_project 6 83485574 83495666 + Mob1a protein_coding processed_transcript MGP_CASTEiJ_T0078537.1 MGP_CASTEiJ_G0030017.1 mouse_genomes_project 6 83485592 83492044 + MGP_CASTEiJ_P0078537 Mob1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078538.1 MGP_CASTEiJ_G0030017.1 mouse_genomes_project 6 83485636 83504943 + MGP_CASTEiJ_P0078538 Mob1a protein_coding protein_coding MGP_CASTEiJ_T0078539.1 MGP_CASTEiJ_G0030017.1 mouse_genomes_project 6 83485810 83504868 + MGP_CASTEiJ_P0078539 Mob1a protein_coding protein_coding MGP_CASTEiJ_T0079475.1 MGP_CASTEiJ_G0030200.1 mouse_genomes_project 6 114655552 114688517 - MGP_CASTEiJ_P0079475 Lhfpl4 protein_coding protein_coding MGP_CASTEiJ_T0079476.1 MGP_CASTEiJ_G0030200.1 mouse_genomes_project 6 114662286 114683692 - MGP_CASTEiJ_P0079476 Lhfpl4 protein_coding protein_coding MGP_CASTEiJ_T0077468.1 MGP_CASTEiJ_G0029762.1 mouse_genomes_project 6 40675332 40676286 + MGP_CASTEiJ_P0077468 Olfr452 protein_coding protein_coding MGP_CASTEiJ_T0004820.1 MGP_CASTEiJ_G0004146.1 mouse_genomes_project 6 50537254 50558194 + Hoxaas3 antisense antisense MGP_CASTEiJ_T0004821.1 MGP_CASTEiJ_G0004146.1 mouse_genomes_project 6 50537272 50581348 + Hoxaas3 antisense antisense MGP_CASTEiJ_T0004824.1 MGP_CASTEiJ_G0004146.1 mouse_genomes_project 6 50566298 50579892 + Hoxaas3 antisense antisense MGP_CASTEiJ_T0014890.1 MGP_CASTEiJ_G0013053.1 mouse_genomes_project 6 71689939 71691039 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011294.1 MGP_CASTEiJ_G0009482.1 mouse_genomes_project 6 14619812 14619921 + Gm27762 misc_RNA misc_RNA MGP_CASTEiJ_T0002026.1 MGP_CASTEiJ_G0001947.1 mouse_genomes_project 6 98482014 98483684 - TEC TEC MGP_CASTEiJ_T0078372.1 MGP_CASTEiJ_G0029981.1 mouse_genomes_project 6 78304759 78307749 - MGP_CASTEiJ_P0078372 Reg3d protein_coding protein_coding MGP_CASTEiJ_T0078373.1 MGP_CASTEiJ_G0029981.1 mouse_genomes_project 6 78304759 78307749 - MGP_CASTEiJ_P0078373 Reg3d protein_coding protein_coding MGP_CASTEiJ_T0078374.1 MGP_CASTEiJ_G0029981.1 mouse_genomes_project 6 78304809 78307398 - MGP_CASTEiJ_P0078374 Reg3d protein_coding protein_coding MGP_CASTEiJ_T0080851.1 MGP_CASTEiJ_G0030497.1 mouse_genomes_project 6 139204485 139298361 - MGP_CASTEiJ_P0080851 Gucy2c protein_coding protein_coding MGP_CASTEiJ_T0080852.1 MGP_CASTEiJ_G0030497.1 mouse_genomes_project 6 139204486 139298338 - MGP_CASTEiJ_P0080852 Gucy2c protein_coding protein_coding MGP_CASTEiJ_T0099954.1 MGP_CASTEiJ_G0036867.1 mouse_genomes_project 6 63711214 63711317 + Gm25205 snRNA snRNA MGP_CASTEiJ_T0079730.1 MGP_CASTEiJ_G0030245.1 mouse_genomes_project 6 117381035 117450838 + MGP_CASTEiJ_P0079730 Ift122 protein_coding protein_coding MGP_CASTEiJ_T0079731.1 MGP_CASTEiJ_G0030245.1 mouse_genomes_project 6 117381095 117450828 + MGP_CASTEiJ_P0079731 Ift122 protein_coding protein_coding MGP_CASTEiJ_T0079732.1 MGP_CASTEiJ_G0030245.1 mouse_genomes_project 6 117381145 117450831 + MGP_CASTEiJ_P0079732 Ift122 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079733.1 MGP_CASTEiJ_G0030245.1 mouse_genomes_project 6 117381153 117383648 + Ift122 protein_coding retained_intron MGP_CASTEiJ_T0079734.1 MGP_CASTEiJ_G0030245.1 mouse_genomes_project 6 117381200 117450469 + MGP_CASTEiJ_P0079734 Ift122 protein_coding protein_coding MGP_CASTEiJ_T0079735.1 MGP_CASTEiJ_G0030245.1 mouse_genomes_project 6 117381210 117401185 + Ift122 protein_coding processed_transcript MGP_CASTEiJ_T0079736.1 MGP_CASTEiJ_G0030245.1 mouse_genomes_project 6 117403154 117413156 + Ift122 protein_coding processed_transcript MGP_CASTEiJ_T0079737.1 MGP_CASTEiJ_G0030245.1 mouse_genomes_project 6 117411765 117413161 + Ift122 protein_coding processed_transcript MGP_CASTEiJ_T0079738.1 MGP_CASTEiJ_G0030245.1 mouse_genomes_project 6 117412940 117414633 + Ift122 protein_coding retained_intron MGP_CASTEiJ_T0079739.1 MGP_CASTEiJ_G0030245.1 mouse_genomes_project 6 117419759 117425374 + Ift122 protein_coding retained_intron MGP_CASTEiJ_T0079740.1 MGP_CASTEiJ_G0030245.1 mouse_genomes_project 6 117424864 117450832 + Ift122 protein_coding processed_transcript MGP_CASTEiJ_T0079741.1 MGP_CASTEiJ_G0030245.1 mouse_genomes_project 6 117428384 117450833 + Ift122 protein_coding retained_intron MGP_CASTEiJ_T0014851.1 MGP_CASTEiJ_G0013014.1 mouse_genomes_project 6 64542071 64543469 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099982.1 MGP_CASTEiJ_G0036895.1 mouse_genomes_project 6 131639966 131640029 + Gm26160 snRNA snRNA MGP_CASTEiJ_T0079291.1 MGP_CASTEiJ_G0030166.1 mouse_genomes_project 6 99169525 99283735 - MGP_CASTEiJ_P0079291 Gm765 protein_coding protein_coding MGP_CASTEiJ_T0079292.1 MGP_CASTEiJ_G0030166.1 mouse_genomes_project 6 99282445 99283640 - Gm765 protein_coding retained_intron MGP_CASTEiJ_T0076319.1 MGP_CASTEiJ_G0029518.1 mouse_genomes_project 6 220282 333667 + MGP_CASTEiJ_P0076319 Vps50 protein_coding protein_coding MGP_CASTEiJ_T0076320.1 MGP_CASTEiJ_G0029518.1 mouse_genomes_project 6 220304 331209 + MGP_CASTEiJ_P0076320 Vps50 protein_coding protein_coding MGP_CASTEiJ_T0076321.1 MGP_CASTEiJ_G0029518.1 mouse_genomes_project 6 220322 333451 + MGP_CASTEiJ_P0076321 Vps50 protein_coding protein_coding MGP_CASTEiJ_T0076322.1 MGP_CASTEiJ_G0029518.1 mouse_genomes_project 6 220326 244675 + Vps50 protein_coding retained_intron MGP_CASTEiJ_T0076323.1 MGP_CASTEiJ_G0029518.1 mouse_genomes_project 6 239806 258433 + Vps50 protein_coding processed_transcript MGP_CASTEiJ_T0076324.1 MGP_CASTEiJ_G0029518.1 mouse_genomes_project 6 289996 333451 + Vps50 protein_coding retained_intron MGP_CASTEiJ_T0076325.1 MGP_CASTEiJ_G0029518.1 mouse_genomes_project 6 302165 333451 + Vps50 protein_coding processed_transcript MGP_CASTEiJ_T0076326.1 MGP_CASTEiJ_G0029518.1 mouse_genomes_project 6 316636 321661 + Vps50 protein_coding retained_intron MGP_CASTEiJ_T0076327.1 MGP_CASTEiJ_G0029518.1 mouse_genomes_project 6 322626 330359 + Vps50 protein_coding processed_transcript MGP_CASTEiJ_T0077979.1 MGP_CASTEiJ_G0029888.1 mouse_genomes_project 6 55833691 55835219 + MGP_CASTEiJ_P0077979 Vmn1r14 protein_coding protein_coding MGP_CASTEiJ_T0079283.1 MGP_CASTEiJ_G0030165.1 mouse_genomes_project 6 98717206 98933496 + MGP_CASTEiJ_P0079283 Mitf protein_coding protein_coding MGP_CASTEiJ_T0079284.1 MGP_CASTEiJ_G0030165.1 mouse_genomes_project 6 98717212 98855563 + Mitf protein_coding retained_intron MGP_CASTEiJ_T0079285.1 MGP_CASTEiJ_G0030165.1 mouse_genomes_project 6 98717212 98936261 + MGP_CASTEiJ_P0079285 Mitf protein_coding protein_coding MGP_CASTEiJ_T0079286.1 MGP_CASTEiJ_G0030165.1 mouse_genomes_project 6 98842318 98933622 + MGP_CASTEiJ_P0079286 Mitf protein_coding protein_coding MGP_CASTEiJ_T0079287.1 MGP_CASTEiJ_G0030165.1 mouse_genomes_project 6 98854307 98933622 + MGP_CASTEiJ_P0079287 Mitf protein_coding protein_coding MGP_CASTEiJ_T0079288.1 MGP_CASTEiJ_G0030165.1 mouse_genomes_project 6 98905391 98933622 + MGP_CASTEiJ_P0079288 Mitf protein_coding protein_coding MGP_CASTEiJ_T0079289.1 MGP_CASTEiJ_G0030165.1 mouse_genomes_project 6 98905418 98933400 + MGP_CASTEiJ_P0079289 Mitf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079290.1 MGP_CASTEiJ_G0030165.1 mouse_genomes_project 6 98905520 98933078 + MGP_CASTEiJ_P0079290 Mitf protein_coding protein_coding MGP_CASTEiJ_T0080808.1 MGP_CASTEiJ_G0030489.1 mouse_genomes_project 6 137577535 137628598 + MGP_CASTEiJ_P0080808 Fam234b protein_coding protein_coding MGP_CASTEiJ_T0080809.1 MGP_CASTEiJ_G0030489.1 mouse_genomes_project 6 137577535 137637330 + MGP_CASTEiJ_P0080809 Fam234b protein_coding protein_coding MGP_CASTEiJ_T0080810.1 MGP_CASTEiJ_G0030489.1 mouse_genomes_project 6 137577667 137588860 + MGP_CASTEiJ_P0080810 Fam234b protein_coding protein_coding MGP_CASTEiJ_T0080811.1 MGP_CASTEiJ_G0030489.1 mouse_genomes_project 6 137577970 137588889 + MGP_CASTEiJ_P0080811 Fam234b protein_coding protein_coding MGP_CASTEiJ_T0080812.1 MGP_CASTEiJ_G0030489.1 mouse_genomes_project 6 137624005 137628594 + Fam234b protein_coding retained_intron MGP_CASTEiJ_T0079590.1 MGP_CASTEiJ_G0030219.1 mouse_genomes_project 6 115138435 115149982 + MGP_CASTEiJ_P0079590 Brk1 protein_coding protein_coding MGP_CASTEiJ_T0002048.1 MGP_CASTEiJ_G0001969.1 mouse_genomes_project 6 113760606 113763121 + TEC TEC MGP_CASTEiJ_T0080657.1 MGP_CASTEiJ_G0030431.1 mouse_genomes_project 6 132033495 132042734 + MGP_CASTEiJ_P0080657 Gabarapl1 protein_coding protein_coding MGP_CASTEiJ_T0080658.1 MGP_CASTEiJ_G0030431.1 mouse_genomes_project 6 132033535 132041894 + MGP_CASTEiJ_P0080658 Gabarapl1 protein_coding protein_coding MGP_CASTEiJ_T0080659.1 MGP_CASTEiJ_G0030431.1 mouse_genomes_project 6 132033711 132041822 + MGP_CASTEiJ_P0080659 Gabarapl1 protein_coding protein_coding MGP_CASTEiJ_T0080660.1 MGP_CASTEiJ_G0030431.1 mouse_genomes_project 6 132033886 132041625 + MGP_CASTEiJ_P0080660 Gabarapl1 protein_coding protein_coding MGP_CASTEiJ_T0008479.1 MGP_CASTEiJ_G0006864.1 mouse_genomes_project 6 106735574 106739365 - lincRNA lincRNA MGP_CASTEiJ_T0078307.1 MGP_CASTEiJ_G0029968.1 mouse_genomes_project 6 72212445 72231817 + MGP_CASTEiJ_P0078307 Capg protein_coding protein_coding MGP_CASTEiJ_T0078308.1 MGP_CASTEiJ_G0029968.1 mouse_genomes_project 6 72212591 72231815 + MGP_CASTEiJ_P0078308 Capg protein_coding protein_coding MGP_CASTEiJ_T0078309.1 MGP_CASTEiJ_G0029968.1 mouse_genomes_project 6 72214870 72225117 + MGP_CASTEiJ_P0078309 Capg protein_coding protein_coding MGP_CASTEiJ_T0078310.1 MGP_CASTEiJ_G0029968.1 mouse_genomes_project 6 72217095 72226626 + MGP_CASTEiJ_P0078310 Capg protein_coding protein_coding MGP_CASTEiJ_T0078311.1 MGP_CASTEiJ_G0029968.1 mouse_genomes_project 6 72218374 72231817 + MGP_CASTEiJ_P0078311 Capg protein_coding protein_coding MGP_CASTEiJ_T0078312.1 MGP_CASTEiJ_G0029968.1 mouse_genomes_project 6 72218533 72226597 + Capg protein_coding retained_intron MGP_CASTEiJ_T0078313.1 MGP_CASTEiJ_G0029968.1 mouse_genomes_project 6 72218552 72224731 + MGP_CASTEiJ_P0078313 Capg protein_coding protein_coding MGP_CASTEiJ_T0078314.1 MGP_CASTEiJ_G0029968.1 mouse_genomes_project 6 72218559 72224500 + Capg protein_coding retained_intron MGP_CASTEiJ_T0078315.1 MGP_CASTEiJ_G0029968.1 mouse_genomes_project 6 72218753 72224689 + MGP_CASTEiJ_P0078315 Capg protein_coding protein_coding MGP_CASTEiJ_T0078316.1 MGP_CASTEiJ_G0029968.1 mouse_genomes_project 6 72222092 72227113 + MGP_CASTEiJ_P0078316 Capg protein_coding protein_coding MGP_CASTEiJ_T0078317.1 MGP_CASTEiJ_G0029968.1 mouse_genomes_project 6 72224843 72226703 + Capg protein_coding retained_intron MGP_CASTEiJ_T0099965.1 MGP_CASTEiJ_G0036878.1 mouse_genomes_project 6 97374905 97375002 - Gm22971 snRNA snRNA MGP_CASTEiJ_T0014924.1 MGP_CASTEiJ_G0013087.1 mouse_genomes_project 6 85416559 85417499 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102433.1 MGP_CASTEiJ_G0039158.1 mouse_genomes_project 6 135189229 135189594 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015004.1 MGP_CASTEiJ_G0013167.1 mouse_genomes_project 6 119603234 119604020 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014793.1 MGP_CASTEiJ_G0012956.1 mouse_genomes_project 6 45100457 45100716 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079329.1 MGP_CASTEiJ_G0030171.1 mouse_genomes_project 6 100711927 100726987 - MGP_CASTEiJ_P0079329 Prok2 protein_coding protein_coding MGP_CASTEiJ_T0079330.1 MGP_CASTEiJ_G0030171.1 mouse_genomes_project 6 100711978 100726948 - MGP_CASTEiJ_P0079330 Prok2 protein_coding protein_coding MGP_CASTEiJ_T0079331.1 MGP_CASTEiJ_G0030171.1 mouse_genomes_project 6 100712631 100726978 - MGP_CASTEiJ_P0079331 Prok2 protein_coding protein_coding MGP_CASTEiJ_T0079332.1 MGP_CASTEiJ_G0030171.1 mouse_genomes_project 6 100722712 100726987 - MGP_CASTEiJ_P0079332 Prok2 protein_coding protein_coding MGP_CASTEiJ_T0002034.1 MGP_CASTEiJ_G0001955.1 mouse_genomes_project 6 102263533 102266349 + TEC TEC MGP_CASTEiJ_T0078865.1 MGP_CASTEiJ_G0030078.1 mouse_genomes_project 6 87835374 87841499 + MGP_CASTEiJ_P0078865 Gkn2 protein_coding protein_coding MGP_CASTEiJ_T0001936.1 MGP_CASTEiJ_G0001857.1 mouse_genomes_project 6 71035698 71038541 - TEC TEC MGP_CASTEiJ_T0102393.1 MGP_CASTEiJ_G0039118.1 mouse_genomes_project 6 56544117 56544251 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0001900.1 MGP_CASTEiJ_G0001821.1 mouse_genomes_project 6 43272630 43273905 + TEC TEC MGP_CASTEiJ_T0077393.1 MGP_CASTEiJ_G0029737.1 mouse_genomes_project 6 39714456 39728678 + MGP_CASTEiJ_P0077393 Sval2 protein_coding protein_coding MGP_CASTEiJ_T0077394.1 MGP_CASTEiJ_G0029737.1 mouse_genomes_project 6 39724484 39728637 + MGP_CASTEiJ_P0077394 Sval2 protein_coding protein_coding MGP_CASTEiJ_T0077395.1 MGP_CASTEiJ_G0029737.1 mouse_genomes_project 6 39726037 39728637 + MGP_CASTEiJ_P0077395 Sval2 protein_coding protein_coding MGP_CASTEiJ_T0077396.1 MGP_CASTEiJ_G0029737.1 mouse_genomes_project 6 39727601 39728554 + Sval2 protein_coding retained_intron MGP_CASTEiJ_T0004954.1 MGP_CASTEiJ_G0004237.1 mouse_genomes_project 6 130069631 130071360 + Gm42738 antisense antisense MGP_CASTEiJ_T0008375.1 MGP_CASTEiJ_G0006785.1 mouse_genomes_project 6 48227042 48285403 + Gm3455 lincRNA lincRNA MGP_CASTEiJ_T0008486.1 MGP_CASTEiJ_G0006871.1 mouse_genomes_project 6 115165817 115167319 - 1700015O11Rik lincRNA lincRNA MGP_CASTEiJ_T0002601.1 MGP_CASTEiJ_G0002496.1 mouse_genomes_project 6 39013566 39014037 + MGP_CASTEiJ_P0002601 Trbv15 TR_V_gene TR_V_gene MGP_CASTEiJ_T0008369.1 MGP_CASTEiJ_G0006780.1 mouse_genomes_project 6 46487380 46501903 - Gm44696 lincRNA lincRNA MGP_CASTEiJ_T0099969.1 MGP_CASTEiJ_G0036882.1 mouse_genomes_project 6 104766231 104766293 + Gm24784 snRNA snRNA MGP_CASTEiJ_T0076818.1 MGP_CASTEiJ_G0029618.1 mouse_genomes_project 6 26642681 26670423 + MGP_CASTEiJ_P0076818 Calu protein_coding protein_coding MGP_CASTEiJ_T0076819.1 MGP_CASTEiJ_G0029618.1 mouse_genomes_project 6 26642681 26670423 + MGP_CASTEiJ_P0076819 Calu protein_coding protein_coding MGP_CASTEiJ_T0076820.1 MGP_CASTEiJ_G0029618.1 mouse_genomes_project 6 26642718 26672592 + MGP_CASTEiJ_P0076820 Calu protein_coding protein_coding MGP_CASTEiJ_T0076821.1 MGP_CASTEiJ_G0029618.1 mouse_genomes_project 6 26642731 26672046 + MGP_CASTEiJ_P0076821 Calu protein_coding protein_coding MGP_CASTEiJ_T0076822.1 MGP_CASTEiJ_G0029618.1 mouse_genomes_project 6 26642738 26672593 + MGP_CASTEiJ_P0076822 Calu protein_coding protein_coding MGP_CASTEiJ_T0076823.1 MGP_CASTEiJ_G0029618.1 mouse_genomes_project 6 26651083 26670944 + MGP_CASTEiJ_P0076823 Calu protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076824.1 MGP_CASTEiJ_G0029618.1 mouse_genomes_project 6 26656085 26669323 + MGP_CASTEiJ_P0076824 Calu protein_coding protein_coding MGP_CASTEiJ_T0076825.1 MGP_CASTEiJ_G0029618.1 mouse_genomes_project 6 26667586 26674697 + MGP_CASTEiJ_P0076825 Calu protein_coding protein_coding MGP_CASTEiJ_T0076826.1 MGP_CASTEiJ_G0029618.1 mouse_genomes_project 6 26669635 26670950 + Calu protein_coding processed_transcript MGP_CASTEiJ_T0001965.1 MGP_CASTEiJ_G0001886.1 mouse_genomes_project 6 80288465 80290020 + TEC TEC MGP_CASTEiJ_T0076456.1 MGP_CASTEiJ_G0029546.1 mouse_genomes_project 6 5063465 5273203 + MGP_CASTEiJ_P0076456 Umad1 protein_coding protein_coding MGP_CASTEiJ_T0076457.1 MGP_CASTEiJ_G0029546.1 mouse_genomes_project 6 5063527 5238951 + MGP_CASTEiJ_P0076457 Umad1 protein_coding protein_coding MGP_CASTEiJ_T0076458.1 MGP_CASTEiJ_G0029546.1 mouse_genomes_project 6 5063559 5240580 + MGP_CASTEiJ_P0076458 Umad1 protein_coding protein_coding MGP_CASTEiJ_T0076459.1 MGP_CASTEiJ_G0029546.1 mouse_genomes_project 6 5063605 5239092 + MGP_CASTEiJ_P0076459 Umad1 protein_coding protein_coding MGP_CASTEiJ_T0076460.1 MGP_CASTEiJ_G0029546.1 mouse_genomes_project 6 5063607 5240576 + MGP_CASTEiJ_P0076460 Umad1 protein_coding protein_coding MGP_CASTEiJ_T0076461.1 MGP_CASTEiJ_G0029546.1 mouse_genomes_project 6 5063621 5085273 + Umad1 protein_coding processed_transcript MGP_CASTEiJ_T0076463.1 MGP_CASTEiJ_G0029546.1 mouse_genomes_project 6 5076085 5240583 + MGP_CASTEiJ_P0076463 Umad1 protein_coding protein_coding MGP_CASTEiJ_T0076464.1 MGP_CASTEiJ_G0029546.1 mouse_genomes_project 6 5230879 5240054 + Umad1 protein_coding processed_transcript MGP_CASTEiJ_T0000285.1 MGP_CASTEiJ_G0000234.1 mouse_genomes_project 6 68760616 68761285 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0102435.1 MGP_CASTEiJ_G0039160.1 mouse_genomes_project 6 135255699 135256682 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0078015.1 MGP_CASTEiJ_G0029906.1 mouse_genomes_project 6 56813245 56814268 + MGP_CASTEiJ_P0078015 Vmn1r29 protein_coding protein_coding MGP_CASTEiJ_T0078658.1 MGP_CASTEiJ_G0030037.1 mouse_genomes_project 6 85467247 85490125 + MGP_CASTEiJ_P0078658 Emx1 protein_coding protein_coding MGP_CASTEiJ_T0078659.1 MGP_CASTEiJ_G0030037.1 mouse_genomes_project 6 85477881 85490229 + Emx1 protein_coding retained_intron MGP_CASTEiJ_T0015005.1 MGP_CASTEiJ_G0013168.1 mouse_genomes_project 6 120275208 120276808 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076438.1 MGP_CASTEiJ_G0029541.1 mouse_genomes_project 6 4469937 4488502 - MGP_CASTEiJ_P0076438 Asns protein_coding unknown_likely_coding MGP_CASTEiJ_T0076439.1 MGP_CASTEiJ_G0029541.1 mouse_genomes_project 6 4469943 4488788 - MGP_CASTEiJ_P0076439 Asns protein_coding protein_coding MGP_CASTEiJ_T0076440.1 MGP_CASTEiJ_G0029541.1 mouse_genomes_project 6 4469943 4488405 - MGP_CASTEiJ_P0076440 Asns protein_coding protein_coding MGP_CASTEiJ_T0076441.1 MGP_CASTEiJ_G0029541.1 mouse_genomes_project 6 4470244 4472159 - Asns protein_coding processed_transcript MGP_CASTEiJ_T0076442.1 MGP_CASTEiJ_G0029541.1 mouse_genomes_project 6 4476090 4478202 - Asns protein_coding retained_intron MGP_CASTEiJ_T0076443.1 MGP_CASTEiJ_G0029541.1 mouse_genomes_project 6 4478116 4488644 - MGP_CASTEiJ_P0076443 Asns protein_coding protein_coding MGP_CASTEiJ_T0076444.1 MGP_CASTEiJ_G0029541.1 mouse_genomes_project 6 4480821 4487764 - MGP_CASTEiJ_P0076444 Asns protein_coding protein_coding MGP_CASTEiJ_T0076445.1 MGP_CASTEiJ_G0029541.1 mouse_genomes_project 6 4480913 4488406 - MGP_CASTEiJ_P0076445 Asns protein_coding protein_coding MGP_CASTEiJ_T0076763.1 MGP_CASTEiJ_G0029606.1 mouse_genomes_project 6 25666084 25669286 + MGP_CASTEiJ_P0076763 Arf5 protein_coding protein_coding MGP_CASTEiJ_T0076764.1 MGP_CASTEiJ_G0029606.1 mouse_genomes_project 6 25666108 25669030 + MGP_CASTEiJ_P0076764 Arf5 protein_coding protein_coding MGP_CASTEiJ_T0076765.1 MGP_CASTEiJ_G0029606.1 mouse_genomes_project 6 25666227 25667151 + Arf5 protein_coding retained_intron MGP_CASTEiJ_T0102425.1 MGP_CASTEiJ_G0039150.1 mouse_genomes_project 6 132302254 132310880 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002039.1 MGP_CASTEiJ_G0001960.1 mouse_genomes_project 6 102684183 102686291 + TEC TEC MGP_CASTEiJ_T0001980.1 MGP_CASTEiJ_G0001901.1 mouse_genomes_project 6 86915777 86917528 + TEC TEC MGP_CASTEiJ_T0080102.1 MGP_CASTEiJ_G0030311.1 mouse_genomes_project 6 124157253 124181296 + MGP_CASTEiJ_P0080102 M6pr protein_coding protein_coding MGP_CASTEiJ_T0080103.1 MGP_CASTEiJ_G0030311.1 mouse_genomes_project 6 124157253 124181296 + MGP_CASTEiJ_P0080103 M6pr protein_coding protein_coding MGP_CASTEiJ_T0080104.1 MGP_CASTEiJ_G0030311.1 mouse_genomes_project 6 124157532 124174680 + M6pr protein_coding retained_intron MGP_CASTEiJ_T0011290.1 MGP_CASTEiJ_G0009478.1 mouse_genomes_project 6 3705735 3705881 - Dlx6os1 misc_RNA misc_RNA MGP_CASTEiJ_T0078702.1 MGP_CASTEiJ_G0030046.1 mouse_genomes_project 6 85895192 86013050 + MGP_CASTEiJ_P0078702 Alms1 protein_coding protein_coding MGP_CASTEiJ_T0078703.1 MGP_CASTEiJ_G0030046.1 mouse_genomes_project 6 85895307 86132613 + MGP_CASTEiJ_P0078703 Alms1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0078704.1 MGP_CASTEiJ_G0030046.1 mouse_genomes_project 6 85954048 85956779 + Alms1 protein_coding retained_intron MGP_CASTEiJ_T0078705.1 MGP_CASTEiJ_G0030046.1 mouse_genomes_project 6 85961325 85966137 + Alms1 protein_coding retained_intron MGP_CASTEiJ_T0078707.1 MGP_CASTEiJ_G0030046.1 mouse_genomes_project 6 86085484 86088526 + Alms1 protein_coding retained_intron MGP_CASTEiJ_T0081264.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151257983 151292198 - MGP_CASTEiJ_P0081264 Ergic2 protein_coding protein_coding MGP_CASTEiJ_T0081265.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151260118 151291931 - MGP_CASTEiJ_P0081265 Ergic2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081266.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151260212 151266937 - MGP_CASTEiJ_P0081266 Ergic2 protein_coding protein_coding MGP_CASTEiJ_T0081267.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151260267 151262111 - MGP_CASTEiJ_P0081267 Ergic2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081268.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151260547 151274101 - MGP_CASTEiJ_P0081268 Ergic2 protein_coding protein_coding MGP_CASTEiJ_T0081269.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151260830 151275086 - Ergic2 protein_coding retained_intron MGP_CASTEiJ_T0081270.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151261948 151268552 - Ergic2 protein_coding retained_intron MGP_CASTEiJ_T0081271.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151262600 151292198 - Ergic2 protein_coding processed_transcript MGP_CASTEiJ_T0081272.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151266881 151275371 - Ergic2 protein_coding retained_intron MGP_CASTEiJ_T0081273.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151268345 151274084 - Ergic2 protein_coding processed_transcript MGP_CASTEiJ_T0081274.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151268391 151291846 - MGP_CASTEiJ_P0081274 Ergic2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081275.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151269764 151275188 - Ergic2 protein_coding processed_transcript MGP_CASTEiJ_T0081276.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151274038 151282623 - Ergic2 protein_coding retained_intron MGP_CASTEiJ_T0081277.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151278793 151291801 - Ergic2 protein_coding retained_intron MGP_CASTEiJ_T0081278.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151281325 151291846 - MGP_CASTEiJ_P0081278 Ergic2 protein_coding protein_coding MGP_CASTEiJ_T0081279.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151282080 151291845 - Ergic2 protein_coding retained_intron MGP_CASTEiJ_T0081280.1 MGP_CASTEiJ_G0030575.1 mouse_genomes_project 6 151282533 151291829 - Ergic2 protein_coding processed_transcript MGP_CASTEiJ_T0098992.1 MGP_CASTEiJ_G0035912.1 mouse_genomes_project 6 84159134 84161906 + Gm43920 sense_intronic sense_intronic MGP_CASTEiJ_T0101154.1 MGP_CASTEiJ_G0038067.1 mouse_genomes_project 6 9920207 9920336 + Gm24985 snoRNA snoRNA MGP_CASTEiJ_T0077477.1 MGP_CASTEiJ_G0029768.1 mouse_genomes_project 6 40953657 41104248 + MGP_CASTEiJ_P0077477 Olfr434 protein_coding protein_coding MGP_CASTEiJ_T0077487.1 MGP_CASTEiJ_G0029768.1 mouse_genomes_project 6 41103749 41104805 + MGP_CASTEiJ_P0077487 Olfr434 protein_coding protein_coding MGP_CASTEiJ_T0076731.1 MGP_CASTEiJ_G0029599.1 mouse_genomes_project 6 22043183 22076688 + MGP_CASTEiJ_P0076731 Hyal5 protein_coding protein_coding MGP_CASTEiJ_T0076732.1 MGP_CASTEiJ_G0029599.1 mouse_genomes_project 6 22064457 22076538 + MGP_CASTEiJ_P0076732 Hyal5 protein_coding protein_coding MGP_CASTEiJ_T0076733.1 MGP_CASTEiJ_G0029599.1 mouse_genomes_project 6 22075253 22076478 + Hyal5 protein_coding processed_transcript MGP_CASTEiJ_T0015091.1 MGP_CASTEiJ_G0013254.1 mouse_genomes_project 6 144954605 144955670 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077131.1 MGP_CASTEiJ_G0029665.1 mouse_genomes_project 6 32493814 32527036 - MGP_CASTEiJ_P0077131 protein_coding protein_coding MGP_CASTEiJ_T0077132.1 MGP_CASTEiJ_G0029665.1 mouse_genomes_project 6 32494465 32534556 - MGP_CASTEiJ_P0077132 protein_coding protein_coding MGP_CASTEiJ_T0077133.1 MGP_CASTEiJ_G0029665.1 mouse_genomes_project 6 32495992 32497055 - protein_coding processed_transcript MGP_CASTEiJ_T0077134.1 MGP_CASTEiJ_G0029665.1 mouse_genomes_project 6 32496913 32504431 - MGP_CASTEiJ_P0077134 protein_coding protein_coding MGP_CASTEiJ_T0077135.1 MGP_CASTEiJ_G0029665.1 mouse_genomes_project 6 32502308 32528085 - MGP_CASTEiJ_P0077135 protein_coding protein_coding MGP_CASTEiJ_T0000162.1 MGP_CASTEiJ_G0000124.1 mouse_genomes_project 6 68078151 68078594 + MGP_CASTEiJ_P0000162 Igkv20-101-2 IG_V_gene IG_V_gene MGP_CASTEiJ_T0001993.1 MGP_CASTEiJ_G0001914.1 mouse_genomes_project 6 88289059 88289934 - TEC TEC MGP_CASTEiJ_T0001974.1 MGP_CASTEiJ_G0001895.1 mouse_genomes_project 6 83581623 83585210 - TEC TEC MGP_CASTEiJ_T0080736.1 MGP_CASTEiJ_G0030473.1 mouse_genomes_project 6 135541480 135543398 + MGP_CASTEiJ_P0080736 Smim10l1 protein_coding protein_coding MGP_CASTEiJ_T0080737.1 MGP_CASTEiJ_G0030473.1 mouse_genomes_project 6 135541836 135551903 + MGP_CASTEiJ_P0080737 Smim10l1 protein_coding protein_coding MGP_CASTEiJ_T0080738.1 MGP_CASTEiJ_G0030473.1 mouse_genomes_project 6 135541870 135551905 + MGP_CASTEiJ_P0080738 Smim10l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0014848.1 MGP_CASTEiJ_G0013011.1 mouse_genomes_project 6 64452138 64452570 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004916.1 MGP_CASTEiJ_G0004206.1 mouse_genomes_project 6 109895509 109982560 - 0610040F04Rik antisense antisense MGP_CASTEiJ_T0004917.1 MGP_CASTEiJ_G0004206.1 mouse_genomes_project 6 109930203 109933850 - 0610040F04Rik antisense antisense MGP_CASTEiJ_T0080172.1 MGP_CASTEiJ_G0030326.1 mouse_genomes_project 6 124954968 124978180 + MGP_CASTEiJ_P0080172 Clec4b1 protein_coding protein_coding MGP_CASTEiJ_T0004803.1 MGP_CASTEiJ_G0004133.1 mouse_genomes_project 6 37402494 37412463 - Gm16272 antisense antisense MGP_CASTEiJ_T0011297.1 MGP_CASTEiJ_G0009485.1 mouse_genomes_project 6 14622773 14623030 + Gm27542 misc_RNA misc_RNA MGP_CASTEiJ_T0077652.1 MGP_CASTEiJ_G0029811.1 mouse_genomes_project 6 46956389 46963937 - MGP_CASTEiJ_P0077652 Tmem176b protein_coding protein_coding MGP_CASTEiJ_T0077653.1 MGP_CASTEiJ_G0029811.1 mouse_genomes_project 6 46956396 46963543 - MGP_CASTEiJ_P0077653 Tmem176b protein_coding protein_coding MGP_CASTEiJ_T0077654.1 MGP_CASTEiJ_G0029811.1 mouse_genomes_project 6 46956401 46963680 - MGP_CASTEiJ_P0077654 Tmem176b protein_coding protein_coding MGP_CASTEiJ_T0077655.1 MGP_CASTEiJ_G0029811.1 mouse_genomes_project 6 46956443 46963933 - MGP_CASTEiJ_P0077655 Tmem176b protein_coding protein_coding MGP_CASTEiJ_T0077656.1 MGP_CASTEiJ_G0029811.1 mouse_genomes_project 6 46956577 46963700 - MGP_CASTEiJ_P0077656 Tmem176b protein_coding protein_coding MGP_CASTEiJ_T0077657.1 MGP_CASTEiJ_G0029811.1 mouse_genomes_project 6 46957077 46963011 - MGP_CASTEiJ_P0077657 Tmem176b protein_coding protein_coding MGP_CASTEiJ_T0077658.1 MGP_CASTEiJ_G0029811.1 mouse_genomes_project 6 46957192 46963324 - MGP_CASTEiJ_P0077658 Tmem176b protein_coding protein_coding MGP_CASTEiJ_T0077659.1 MGP_CASTEiJ_G0029811.1 mouse_genomes_project 6 46957997 46963641 - MGP_CASTEiJ_P0077659 Tmem176b protein_coding protein_coding MGP_CASTEiJ_T0077660.1 MGP_CASTEiJ_G0029811.1 mouse_genomes_project 6 46957997 46964059 - MGP_CASTEiJ_P0077660 Tmem176b protein_coding protein_coding MGP_CASTEiJ_T0077661.1 MGP_CASTEiJ_G0029811.1 mouse_genomes_project 6 46957999 46963311 - MGP_CASTEiJ_P0077661 Tmem176b protein_coding protein_coding MGP_CASTEiJ_T0077662.1 MGP_CASTEiJ_G0029811.1 mouse_genomes_project 6 46958066 46963151 - MGP_CASTEiJ_P0077662 Tmem176b protein_coding protein_coding MGP_CASTEiJ_T0077663.1 MGP_CASTEiJ_G0029811.1 mouse_genomes_project 6 46958351 46963011 - Tmem176b protein_coding retained_intron MGP_CASTEiJ_T0079508.1 MGP_CASTEiJ_G0030204.1 mouse_genomes_project 6 114824350 114833553 + MGP_CASTEiJ_P0079508 Ogg1 protein_coding protein_coding MGP_CASTEiJ_T0079509.1 MGP_CASTEiJ_G0030204.1 mouse_genomes_project 6 114824363 114828086 + Ogg1 protein_coding retained_intron MGP_CASTEiJ_T0079510.1 MGP_CASTEiJ_G0030204.1 mouse_genomes_project 6 114824378 114833549 + MGP_CASTEiJ_P0079510 Ogg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079511.1 MGP_CASTEiJ_G0030204.1 mouse_genomes_project 6 114824387 114828593 + Ogg1 protein_coding processed_transcript MGP_CASTEiJ_T0079512.1 MGP_CASTEiJ_G0030204.1 mouse_genomes_project 6 114824392 114833350 + MGP_CASTEiJ_P0079512 Ogg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079513.1 MGP_CASTEiJ_G0030204.1 mouse_genomes_project 6 114824490 114828217 + Ogg1 protein_coding retained_intron MGP_CASTEiJ_T0079514.1 MGP_CASTEiJ_G0030204.1 mouse_genomes_project 6 114832679 114834433 + Ogg1 protein_coding retained_intron MGP_CASTEiJ_T0014893.1 MGP_CASTEiJ_G0013056.1 mouse_genomes_project 6 73024733 73025157 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101185.1 MGP_CASTEiJ_G0038098.1 mouse_genomes_project 6 74060963 74061095 + Gm26179 snoRNA snoRNA MGP_CASTEiJ_T0002053.1 MGP_CASTEiJ_G0001974.1 mouse_genomes_project 6 115232476 115233014 + TEC TEC MGP_CASTEiJ_T0079767.1 MGP_CASTEiJ_G0030250.1 mouse_genomes_project 6 117756297 117807069 + MGP_CASTEiJ_P0079767 Fam21 protein_coding protein_coding MGP_CASTEiJ_T0079768.1 MGP_CASTEiJ_G0030250.1 mouse_genomes_project 6 117756305 117799410 + MGP_CASTEiJ_P0079768 Fam21 protein_coding protein_coding MGP_CASTEiJ_T0079769.1 MGP_CASTEiJ_G0030250.1 mouse_genomes_project 6 117756315 117768815 + MGP_CASTEiJ_P0079769 Fam21 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079770.1 MGP_CASTEiJ_G0030250.1 mouse_genomes_project 6 117756354 117757582 + Fam21 protein_coding retained_intron MGP_CASTEiJ_T0079771.1 MGP_CASTEiJ_G0030250.1 mouse_genomes_project 6 117756381 117762231 + MGP_CASTEiJ_P0079771 Fam21 protein_coding protein_coding MGP_CASTEiJ_T0079772.1 MGP_CASTEiJ_G0030250.1 mouse_genomes_project 6 117756396 117764411 + MGP_CASTEiJ_P0079772 Fam21 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079773.1 MGP_CASTEiJ_G0030250.1 mouse_genomes_project 6 117756465 117807048 + Fam21 protein_coding retained_intron MGP_CASTEiJ_T0079774.1 MGP_CASTEiJ_G0030250.1 mouse_genomes_project 6 117756775 117803314 + MGP_CASTEiJ_P0079774 Fam21 protein_coding protein_coding MGP_CASTEiJ_T0079775.1 MGP_CASTEiJ_G0030250.1 mouse_genomes_project 6 117768819 117773062 + Fam21 protein_coding retained_intron MGP_CASTEiJ_T0079776.1 MGP_CASTEiJ_G0030250.1 mouse_genomes_project 6 117770146 117775296 + MGP_CASTEiJ_P0079776 Fam21 protein_coding protein_coding MGP_CASTEiJ_T0079777.1 MGP_CASTEiJ_G0030250.1 mouse_genomes_project 6 117773829 117777698 + Fam21 protein_coding retained_intron MGP_CASTEiJ_T0079778.1 MGP_CASTEiJ_G0030250.1 mouse_genomes_project 6 117800143 117801164 + Fam21 protein_coding retained_intron MGP_CASTEiJ_T0079779.1 MGP_CASTEiJ_G0030250.1 mouse_genomes_project 6 117800891 117803299 + Fam21 protein_coding retained_intron MGP_CASTEiJ_T0078168.1 MGP_CASTEiJ_G0029941.1 mouse_genomes_project 6 70660998 70677242 - MGP_CASTEiJ_P0078168 Thnsl2 protein_coding protein_coding MGP_CASTEiJ_T0078169.1 MGP_CASTEiJ_G0029941.1 mouse_genomes_project 6 70661225 70677150 - MGP_CASTEiJ_P0078169 Thnsl2 protein_coding protein_coding MGP_CASTEiJ_T0078170.1 MGP_CASTEiJ_G0029941.1 mouse_genomes_project 6 70661483 70664784 - MGP_CASTEiJ_P0078170 Thnsl2 protein_coding protein_coding MGP_CASTEiJ_T0078171.1 MGP_CASTEiJ_G0029941.1 mouse_genomes_project 6 70664577 70677134 - Thnsl2 protein_coding processed_transcript MGP_CASTEiJ_T0004941.1 MGP_CASTEiJ_G0004226.1 mouse_genomes_project 6 126595825 126598032 - Gm44096 antisense antisense MGP_CASTEiJ_T0010453.1 MGP_CASTEiJ_G0008641.1 mouse_genomes_project 6 26694739 26694828 + Gm26220 miRNA miRNA MGP_CASTEiJ_T0010515.1 MGP_CASTEiJ_G0008703.1 mouse_genomes_project 6 138176310 138176415 + Gm22892 miRNA miRNA MGP_CASTEiJ_T0011327.1 MGP_CASTEiJ_G0009515.1 mouse_genomes_project 6 85316902 85317157 + Gm26353 misc_RNA misc_RNA MGP_CASTEiJ_T0001858.1 MGP_CASTEiJ_G0001779.1 mouse_genomes_project 6 12678155 12679789 + TEC TEC MGP_CASTEiJ_T0014752.1 MGP_CASTEiJ_G0012915.1 mouse_genomes_project 6 22023061 22023888 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008515.1 MGP_CASTEiJ_G0006898.1 mouse_genomes_project 6 131003512 131005893 - Gm44009 lincRNA lincRNA MGP_CASTEiJ_T0001847.1 MGP_CASTEiJ_G0001768.1 mouse_genomes_project 6 1703246 1704425 + TEC TEC MGP_CASTEiJ_T0078886.1 MGP_CASTEiJ_G0030087.1 mouse_genomes_project 6 88272561 88322643 - MGP_CASTEiJ_P0078886 Gm45140 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078890.1 MGP_CASTEiJ_G0030087.1 mouse_genomes_project 6 88276058 88304957 - MGP_CASTEiJ_P0078890 Gm45140 protein_coding protein_coding MGP_CASTEiJ_T0002041.1 MGP_CASTEiJ_G0001962.1 mouse_genomes_project 6 104706786 104712259 + TEC TEC MGP_CASTEiJ_T0078092.1 MGP_CASTEiJ_G0029921.1 mouse_genomes_project 6 64691258 64755449 + MGP_CASTEiJ_P0078092 C130060K24Rik protein_coding protein_coding MGP_CASTEiJ_T0078093.1 MGP_CASTEiJ_G0029921.1 mouse_genomes_project 6 64691362 64763117 + MGP_CASTEiJ_P0078093 C130060K24Rik protein_coding protein_coding MGP_CASTEiJ_T0078094.1 MGP_CASTEiJ_G0029921.1 mouse_genomes_project 6 64740487 64755477 + MGP_CASTEiJ_P0078094 C130060K24Rik protein_coding protein_coding MGP_CASTEiJ_T0008287.1 MGP_CASTEiJ_G0006728.1 mouse_genomes_project 6 3293061 3322665 - Gm20617 lincRNA lincRNA MGP_CASTEiJ_T0008288.1 MGP_CASTEiJ_G0006728.1 mouse_genomes_project 6 3293465 3322831 - Gm20617 lincRNA lincRNA MGP_CASTEiJ_T0077505.1 MGP_CASTEiJ_G0029779.1 mouse_genomes_project 6 43011009 45441917 + MGP_CASTEiJ_P0077505 Cntnap2 protein_coding protein_coding MGP_CASTEiJ_T0077506.1 MGP_CASTEiJ_G0029779.1 mouse_genomes_project 6 44176237 44444858 + Cntnap2 protein_coding processed_transcript MGP_CASTEiJ_T0077507.1 MGP_CASTEiJ_G0029779.1 mouse_genomes_project 6 45047429 45161186 + MGP_CASTEiJ_P0077507 Cntnap2 protein_coding protein_coding MGP_CASTEiJ_T0077508.1 MGP_CASTEiJ_G0029779.1 mouse_genomes_project 6 45378172 45441790 + MGP_CASTEiJ_P0077508 Cntnap2 protein_coding protein_coding MGP_CASTEiJ_T0077509.1 MGP_CASTEiJ_G0029779.1 mouse_genomes_project 6 45378238 45437254 + MGP_CASTEiJ_P0077509 Cntnap2 protein_coding protein_coding MGP_CASTEiJ_T0080425.1 MGP_CASTEiJ_G0030374.1 mouse_genomes_project 6 127366027 127373960 - MGP_CASTEiJ_P0080425 Tapbpl protein_coding protein_coding MGP_CASTEiJ_T0010513.1 MGP_CASTEiJ_G0008701.1 mouse_genomes_project 6 131422014 131422070 - Mir7649 miRNA miRNA MGP_CASTEiJ_T0080817.1 MGP_CASTEiJ_G0030491.1 mouse_genomes_project 6 137701097 137702373 - MGP_CASTEiJ_P0080817 Pbp2 protein_coding protein_coding MGP_CASTEiJ_T0002006.1 MGP_CASTEiJ_G0001927.1 mouse_genomes_project 6 89914894 89916316 + TEC TEC MGP_CASTEiJ_T0077447.1 MGP_CASTEiJ_G0029753.1 mouse_genomes_project 6 40330740 40331747 - MGP_CASTEiJ_P0077447 Olfr457 protein_coding protein_coding MGP_CASTEiJ_T0077449.1 MGP_CASTEiJ_G0029753.1 mouse_genomes_project 6 40330772 40347836 - MGP_CASTEiJ_P0077449 Olfr457 protein_coding protein_coding MGP_CASTEiJ_T0077450.1 MGP_CASTEiJ_G0029753.1 mouse_genomes_project 6 40331337 40347826 - MGP_CASTEiJ_P0077450 Olfr457 protein_coding protein_coding MGP_CASTEiJ_T0077484.1 MGP_CASTEiJ_G0029773.1 mouse_genomes_project 6 41060047 41061101 + MGP_CASTEiJ_P0077484 Olfr13 protein_coding protein_coding MGP_CASTEiJ_T0077028.1 MGP_CASTEiJ_G0029649.1 mouse_genomes_project 6 29577603 29965418 - MGP_CASTEiJ_P0077028 Plxna4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077029.1 MGP_CASTEiJ_G0029649.1 mouse_genomes_project 6 29578761 30037065 - MGP_CASTEiJ_P0077029 Plxna4 protein_coding protein_coding MGP_CASTEiJ_T0077030.1 MGP_CASTEiJ_G0029649.1 mouse_genomes_project 6 29661177 29662603 - Plxna4 protein_coding retained_intron MGP_CASTEiJ_T0004961.1 MGP_CASTEiJ_G0004243.1 mouse_genomes_project 6 136462003 136465126 - Gm17088 antisense antisense MGP_CASTEiJ_T0080491.1 MGP_CASTEiJ_G0030391.1 mouse_genomes_project 6 129150744 129167246 - MGP_CASTEiJ_P0080491 Rad51ap1 protein_coding protein_coding MGP_CASTEiJ_T0080492.1 MGP_CASTEiJ_G0030391.1 mouse_genomes_project 6 129151109 129153525 - Rad51ap1 protein_coding retained_intron MGP_CASTEiJ_T0080493.1 MGP_CASTEiJ_G0030391.1 mouse_genomes_project 6 129151109 129167246 - MGP_CASTEiJ_P0080493 Rad51ap1 protein_coding protein_coding MGP_CASTEiJ_T0080494.1 MGP_CASTEiJ_G0030391.1 mouse_genomes_project 6 129151873 129153431 - Rad51ap1 protein_coding processed_transcript MGP_CASTEiJ_T0080495.1 MGP_CASTEiJ_G0030391.1 mouse_genomes_project 6 129152684 129155972 - Rad51ap1 protein_coding retained_intron MGP_CASTEiJ_T0080496.1 MGP_CASTEiJ_G0030391.1 mouse_genomes_project 6 129154057 129167230 - MGP_CASTEiJ_P0080496 Rad51ap1 protein_coding protein_coding MGP_CASTEiJ_T0080497.1 MGP_CASTEiJ_G0030391.1 mouse_genomes_project 6 129154073 129155810 - Rad51ap1 protein_coding retained_intron MGP_CASTEiJ_T0080498.1 MGP_CASTEiJ_G0030391.1 mouse_genomes_project 6 129155346 129167205 - Rad51ap1 protein_coding processed_transcript MGP_CASTEiJ_T0080499.1 MGP_CASTEiJ_G0030391.1 mouse_genomes_project 6 129155808 129167234 - MGP_CASTEiJ_P0080499 Rad51ap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080500.1 MGP_CASTEiJ_G0030391.1 mouse_genomes_project 6 129156379 129167246 - Rad51ap1 protein_coding retained_intron MGP_CASTEiJ_T0101809.1 MGP_CASTEiJ_G0038575.1 mouse_genomes_project 6 131460854 131467261 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101810.1 MGP_CASTEiJ_G0038575.1 mouse_genomes_project 6 131465315 131467253 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0078921.1 MGP_CASTEiJ_G0030091.1 mouse_genomes_project 6 88401819 88426448 + MGP_CASTEiJ_P0078921 Hmces protein_coding protein_coding MGP_CASTEiJ_T0078922.1 MGP_CASTEiJ_G0030091.1 mouse_genomes_project 6 88401834 88422786 + Hmces protein_coding processed_transcript MGP_CASTEiJ_T0078923.1 MGP_CASTEiJ_G0030091.1 mouse_genomes_project 6 88401842 88402888 + Hmces protein_coding processed_transcript MGP_CASTEiJ_T0078924.1 MGP_CASTEiJ_G0030091.1 mouse_genomes_project 6 88401863 88409456 + MGP_CASTEiJ_P0078924 Hmces protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078925.1 MGP_CASTEiJ_G0030091.1 mouse_genomes_project 6 88402205 88426448 + MGP_CASTEiJ_P0078925 Hmces protein_coding protein_coding MGP_CASTEiJ_T0078926.1 MGP_CASTEiJ_G0030091.1 mouse_genomes_project 6 88405802 88423163 + Hmces protein_coding processed_transcript MGP_CASTEiJ_T0078927.1 MGP_CASTEiJ_G0030091.1 mouse_genomes_project 6 88422730 88426348 + Hmces protein_coding retained_intron MGP_CASTEiJ_T0101801.1 MGP_CASTEiJ_G0038570.1 mouse_genomes_project 6 85399863 85400879 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101802.1 MGP_CASTEiJ_G0038570.1 mouse_genomes_project 6 85400118 85401082 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0101803.1 MGP_CASTEiJ_G0038570.1 mouse_genomes_project 6 85400574 85406706 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0017508.1 MGP_CASTEiJ_G0014946.1 mouse_genomes_project 6 50527446 50531234 + Hoxaas2 processed_transcript antisense MGP_CASTEiJ_T0017509.1 MGP_CASTEiJ_G0014946.1 mouse_genomes_project 6 50528300 50531347 + Hoxaas2 processed_transcript retained_intron MGP_CASTEiJ_T0017510.1 MGP_CASTEiJ_G0014946.1 mouse_genomes_project 6 50530293 50531347 + Hoxaas2 processed_transcript processed_transcript MGP_CASTEiJ_T0079128.1 MGP_CASTEiJ_G0030132.1 mouse_genomes_project 6 92016756 92066114 - MGP_CASTEiJ_P0079128 Wnt7a protein_coding protein_coding MGP_CASTEiJ_T0079129.1 MGP_CASTEiJ_G0030132.1 mouse_genomes_project 6 92016758 92017877 - Wnt7a protein_coding processed_transcript MGP_CASTEiJ_T0079130.1 MGP_CASTEiJ_G0030132.1 mouse_genomes_project 6 92016760 92017851 - Wnt7a protein_coding processed_transcript MGP_CASTEiJ_T0099966.1 MGP_CASTEiJ_G0036879.1 mouse_genomes_project 6 97471671 97471775 - Gm26011 snRNA snRNA MGP_CASTEiJ_T0099000.1 MGP_CASTEiJ_G0035920.1 mouse_genomes_project 6 131920866 131921460 + Gm43914 sense_intronic sense_intronic MGP_CASTEiJ_T0080377.1 MGP_CASTEiJ_G0030366.1 mouse_genomes_project 6 127192355 127206949 + MGP_CASTEiJ_P0080377 Lpar5 protein_coding protein_coding MGP_CASTEiJ_T0080378.1 MGP_CASTEiJ_G0030366.1 mouse_genomes_project 6 127195732 127206285 + MGP_CASTEiJ_P0080378 Lpar5 protein_coding protein_coding MGP_CASTEiJ_T0080379.1 MGP_CASTEiJ_G0030366.1 mouse_genomes_project 6 127195732 127206949 + MGP_CASTEiJ_P0080379 Lpar5 protein_coding protein_coding MGP_CASTEiJ_T0080604.1 MGP_CASTEiJ_G0030414.1 mouse_genomes_project 6 131037269 131247503 - MGP_CASTEiJ_P0080604 protein_coding protein_coding MGP_CASTEiJ_T0080609.1 MGP_CASTEiJ_G0030414.1 mouse_genomes_project 6 131197585 131247440 - MGP_CASTEiJ_P0080609 protein_coding protein_coding MGP_CASTEiJ_T0015086.1 MGP_CASTEiJ_G0013249.1 mouse_genomes_project 6 143172427 143172913 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077402.1 MGP_CASTEiJ_G0029742.1 mouse_genomes_project 6 40072961 40073921 + MGP_CASTEiJ_P0077402 Tas2r144 protein_coding protein_coding MGP_CASTEiJ_T0011295.1 MGP_CASTEiJ_G0009483.1 mouse_genomes_project 6 14620776 14620959 + Gm27960 misc_RNA misc_RNA MGP_CASTEiJ_T0078013.1 MGP_CASTEiJ_G0029904.1 mouse_genomes_project 6 56637332 56638418 - MGP_CASTEiJ_P0078013 protein_coding protein_coding MGP_CASTEiJ_T0077770.1 MGP_CASTEiJ_G0029834.1 mouse_genomes_project 6 50191075 50354578 - MGP_CASTEiJ_P0077770 Skap2 protein_coding protein_coding MGP_CASTEiJ_T0077771.1 MGP_CASTEiJ_G0029834.1 mouse_genomes_project 6 50192754 50205584 - Skap2 protein_coding processed_transcript MGP_CASTEiJ_T0077772.1 MGP_CASTEiJ_G0029834.1 mouse_genomes_project 6 50192816 50354544 - MGP_CASTEiJ_P0077772 Skap2 protein_coding protein_coding MGP_CASTEiJ_T0077773.1 MGP_CASTEiJ_G0029834.1 mouse_genomes_project 6 50193697 50245214 - MGP_CASTEiJ_P0077773 Skap2 protein_coding protein_coding MGP_CASTEiJ_T0077774.1 MGP_CASTEiJ_G0029834.1 mouse_genomes_project 6 50203842 50206324 - Skap2 protein_coding retained_intron MGP_CASTEiJ_T0077775.1 MGP_CASTEiJ_G0029834.1 mouse_genomes_project 6 50208119 50271299 - Skap2 protein_coding processed_transcript MGP_CASTEiJ_T0077776.1 MGP_CASTEiJ_G0029834.1 mouse_genomes_project 6 50332527 50354561 - Skap2 protein_coding retained_intron MGP_CASTEiJ_T0078355.1 MGP_CASTEiJ_G0029978.1 mouse_genomes_project 6 76746800 77912098 - MGP_CASTEiJ_P0078355 Ctnna2 protein_coding protein_coding MGP_CASTEiJ_T0078356.1 MGP_CASTEiJ_G0029978.1 mouse_genomes_project 6 76746800 77912098 - MGP_CASTEiJ_P0078356 Ctnna2 protein_coding protein_coding MGP_CASTEiJ_T0078357.1 MGP_CASTEiJ_G0029978.1 mouse_genomes_project 6 76746803 77911949 - MGP_CASTEiJ_P0078357 Ctnna2 protein_coding protein_coding MGP_CASTEiJ_T0078358.1 MGP_CASTEiJ_G0029978.1 mouse_genomes_project 6 76747715 77911959 - MGP_CASTEiJ_P0078358 Ctnna2 protein_coding protein_coding MGP_CASTEiJ_T0078359.1 MGP_CASTEiJ_G0029978.1 mouse_genomes_project 6 76747921 76771170 - Ctnna2 protein_coding retained_intron MGP_CASTEiJ_T0078360.1 MGP_CASTEiJ_G0029978.1 mouse_genomes_project 6 76784745 77032010 - MGP_CASTEiJ_P0078360 Ctnna2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078361.1 MGP_CASTEiJ_G0029978.1 mouse_genomes_project 6 76800356 77102540 - MGP_CASTEiJ_P0078361 Ctnna2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0078366.1 MGP_CASTEiJ_G0029978.1 mouse_genomes_project 6 77515238 77911959 - MGP_CASTEiJ_P0078366 Ctnna2 protein_coding protein_coding MGP_CASTEiJ_T0078367.1 MGP_CASTEiJ_G0029978.1 mouse_genomes_project 6 77855997 77911984 - Ctnna2 protein_coding processed_transcript MGP_CASTEiJ_T0099002.1 MGP_CASTEiJ_G0035922.1 mouse_genomes_project 6 140037538 140037845 + Gm44258 sense_intronic sense_intronic MGP_CASTEiJ_T0008366.1 MGP_CASTEiJ_G0006777.1 mouse_genomes_project 6 41980991 41983853 - Gm35216 lincRNA lincRNA MGP_CASTEiJ_T0077777.1 MGP_CASTEiJ_G0029835.1 mouse_genomes_project 6 50517310 50520057 - MGP_CASTEiJ_P0077777 Hoxa1 protein_coding protein_coding MGP_CASTEiJ_T0077778.1 MGP_CASTEiJ_G0029835.1 mouse_genomes_project 6 50517315 50520057 - MGP_CASTEiJ_P0077778 Hoxa1 protein_coding protein_coding MGP_CASTEiJ_T0002635.1 MGP_CASTEiJ_G0002525.1 mouse_genomes_project 6 38958573 38958858 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0001848.1 MGP_CASTEiJ_G0001769.1 mouse_genomes_project 6 1715614 1715934 + TEC TEC MGP_CASTEiJ_T0008420.1 MGP_CASTEiJ_G0006822.1 mouse_genomes_project 6 73282338 73309248 - Gm31747 lincRNA lincRNA MGP_CASTEiJ_T0076686.1 MGP_CASTEiJ_G0029584.1 mouse_genomes_project 6 20262971 20331254 - MGP_CASTEiJ_P0076686 Aass protein_coding protein_coding MGP_CASTEiJ_T0076687.1 MGP_CASTEiJ_G0029584.1 mouse_genomes_project 6 20288234 20325623 - Aass protein_coding processed_transcript MGP_CASTEiJ_T0076688.1 MGP_CASTEiJ_G0029584.1 mouse_genomes_project 6 20288234 20325655 - MGP_CASTEiJ_P0076688 Aass protein_coding protein_coding MGP_CASTEiJ_T0076689.1 MGP_CASTEiJ_G0029584.1 mouse_genomes_project 6 20306516 20331184 - Aass protein_coding processed_transcript MGP_CASTEiJ_T0002068.1 MGP_CASTEiJ_G0001988.1 mouse_genomes_project 6 126817250 126817548 - TEC TEC MGP_CASTEiJ_T0008334.1 MGP_CASTEiJ_G0006758.1 mouse_genomes_project 6 28995030 28996779 + Gm6117 lincRNA lincRNA MGP_CASTEiJ_T0080908.1 MGP_CASTEiJ_G0030509.1 mouse_genomes_project 6 140350189 140367223 + MGP_CASTEiJ_P0080908 Strap protein_coding protein_coding MGP_CASTEiJ_T0080909.1 MGP_CASTEiJ_G0030509.1 mouse_genomes_project 6 140360408 140364027 + Strap protein_coding processed_transcript MGP_CASTEiJ_T0080910.1 MGP_CASTEiJ_G0030509.1 mouse_genomes_project 6 140364498 140365966 + Strap protein_coding retained_intron MGP_CASTEiJ_T0077152.1 MGP_CASTEiJ_G0029668.1 mouse_genomes_project 6 32848929 32892914 - MGP_CASTEiJ_P0077152 Slc13a4 protein_coding protein_coding MGP_CASTEiJ_T0077153.1 MGP_CASTEiJ_G0029668.1 mouse_genomes_project 6 32864352 32871969 - Slc13a4 protein_coding retained_intron MGP_CASTEiJ_T0077154.1 MGP_CASTEiJ_G0029668.1 mouse_genomes_project 6 32870337 32892912 - Slc13a4 protein_coding retained_intron MGP_CASTEiJ_T0015026.1 MGP_CASTEiJ_G0013189.1 mouse_genomes_project 6 125892693 125893543 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002047.1 MGP_CASTEiJ_G0001968.1 mouse_genomes_project 6 113535963 113536519 - TEC TEC MGP_CASTEiJ_T0076726.1 MGP_CASTEiJ_G0029597.1 mouse_genomes_project 6 21932782 21954050 + MGP_CASTEiJ_P0076726 Hyal4 protein_coding protein_coding MGP_CASTEiJ_T0076931.1 MGP_CASTEiJ_G0029633.1 mouse_genomes_project 6 27750422 27775464 - MGP_CASTEiJ_P0076931 Zc3hc1 protein_coding protein_coding MGP_CASTEiJ_T0076932.1 MGP_CASTEiJ_G0029633.1 mouse_genomes_project 6 27750426 27775443 - MGP_CASTEiJ_P0076932 Zc3hc1 protein_coding protein_coding MGP_CASTEiJ_T0076933.1 MGP_CASTEiJ_G0029633.1 mouse_genomes_project 6 27750430 27752111 - Zc3hc1 protein_coding retained_intron MGP_CASTEiJ_T0076934.1 MGP_CASTEiJ_G0029633.1 mouse_genomes_project 6 27750430 27775469 - MGP_CASTEiJ_P0076934 Zc3hc1 protein_coding protein_coding MGP_CASTEiJ_T0076935.1 MGP_CASTEiJ_G0029633.1 mouse_genomes_project 6 27750516 27775451 - MGP_CASTEiJ_P0076935 Zc3hc1 protein_coding protein_coding MGP_CASTEiJ_T0076936.1 MGP_CASTEiJ_G0029633.1 mouse_genomes_project 6 27754918 27757631 - Zc3hc1 protein_coding retained_intron MGP_CASTEiJ_T0076937.1 MGP_CASTEiJ_G0029633.1 mouse_genomes_project 6 27757572 27775447 - MGP_CASTEiJ_P0076937 Zc3hc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076938.1 MGP_CASTEiJ_G0029633.1 mouse_genomes_project 6 27759473 27767247 - Zc3hc1 protein_coding processed_transcript MGP_CASTEiJ_T0076939.1 MGP_CASTEiJ_G0029633.1 mouse_genomes_project 6 27760651 27775430 - MGP_CASTEiJ_P0076939 Zc3hc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076940.1 MGP_CASTEiJ_G0029633.1 mouse_genomes_project 6 27769381 27775451 - Zc3hc1 protein_coding retained_intron MGP_CASTEiJ_T0076941.1 MGP_CASTEiJ_G0029633.1 mouse_genomes_project 6 27771927 27775455 - Zc3hc1 protein_coding retained_intron MGP_CASTEiJ_T0078577.1 MGP_CASTEiJ_G0030025.1 mouse_genomes_project 6 83897039 83926930 + MGP_CASTEiJ_P0078577 Vax2 protein_coding protein_coding MGP_CASTEiJ_T0008549.1 MGP_CASTEiJ_G0006918.1 mouse_genomes_project 6 148305398 148310957 + 2010013B24Rik lincRNA lincRNA MGP_CASTEiJ_T0004985.1 MGP_CASTEiJ_G0004264.1 mouse_genomes_project 6 148027662 148033585 + antisense antisense MGP_CASTEiJ_T0080220.1 MGP_CASTEiJ_G0030341.1 mouse_genomes_project 6 126749739 126803878 + Lpcat3 protein_coding retained_intron MGP_CASTEiJ_T0080221.1 MGP_CASTEiJ_G0030341.1 mouse_genomes_project 6 126749739 126803926 + MGP_CASTEiJ_P0080221 Lpcat3 protein_coding protein_coding MGP_CASTEiJ_T0080222.1 MGP_CASTEiJ_G0030341.1 mouse_genomes_project 6 126749884 126801798 + MGP_CASTEiJ_P0080222 Lpcat3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080223.1 MGP_CASTEiJ_G0030341.1 mouse_genomes_project 6 126749893 126799007 + Lpcat3 protein_coding retained_intron MGP_CASTEiJ_T0080224.1 MGP_CASTEiJ_G0030341.1 mouse_genomes_project 6 126749927 126800070 + Lpcat3 protein_coding retained_intron MGP_CASTEiJ_T0080225.1 MGP_CASTEiJ_G0030341.1 mouse_genomes_project 6 126800929 126802121 + Lpcat3 protein_coding retained_intron MGP_CASTEiJ_T0080226.1 MGP_CASTEiJ_G0030341.1 mouse_genomes_project 6 126801764 126802566 + Lpcat3 protein_coding processed_transcript MGP_CASTEiJ_T0080227.1 MGP_CASTEiJ_G0030341.1 mouse_genomes_project 6 126802262 126803436 + Lpcat3 protein_coding retained_intron MGP_CASTEiJ_T0080228.1 MGP_CASTEiJ_G0030341.1 mouse_genomes_project 6 126802512 126803525 + Lpcat3 protein_coding retained_intron MGP_CASTEiJ_T0000173.1 MGP_CASTEiJ_G0000131.1 mouse_genomes_project 6 68313643 68314111 - MGP_CASTEiJ_P0000173 Igkv19-93 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000174.1 MGP_CASTEiJ_G0000131.1 mouse_genomes_project 6 68313643 68314127 - MGP_CASTEiJ_P0000174 Igkv19-93 IG_V_gene IG_V_gene MGP_CASTEiJ_T0077290.1 MGP_CASTEiJ_G0029697.1 mouse_genomes_project 6 37392497 37406950 + MGP_CASTEiJ_P0077290 protein_coding protein_coding MGP_CASTEiJ_T0077291.1 MGP_CASTEiJ_G0029697.1 mouse_genomes_project 6 37392583 37402465 + MGP_CASTEiJ_P0077291 protein_coding protein_coding MGP_CASTEiJ_T0077292.1 MGP_CASTEiJ_G0029697.1 mouse_genomes_project 6 37392588 37405935 + MGP_CASTEiJ_P0077292 protein_coding protein_coding MGP_CASTEiJ_T0077293.1 MGP_CASTEiJ_G0029697.1 mouse_genomes_project 6 37393608 37398606 + protein_coding retained_intron MGP_CASTEiJ_T0077294.1 MGP_CASTEiJ_G0029697.1 mouse_genomes_project 6 37395038 37400648 + MGP_CASTEiJ_P0077294 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077295.1 MGP_CASTEiJ_G0029697.1 mouse_genomes_project 6 37402347 37404128 + protein_coding retained_intron MGP_CASTEiJ_T0014833.1 MGP_CASTEiJ_G0012996.1 mouse_genomes_project 6 57792739 57792943 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000194.1 MGP_CASTEiJ_G0000147.1 mouse_genomes_project 6 69430026 69430588 - MGP_CASTEiJ_P0000194 Igkv5-37 IG_V_gene IG_V_gene MGP_CASTEiJ_T0078481.1 MGP_CASTEiJ_G0030008.1 mouse_genomes_project 6 83244380 83247783 + MGP_CASTEiJ_P0078481 Mogs protein_coding protein_coding MGP_CASTEiJ_T0078482.1 MGP_CASTEiJ_G0030008.1 mouse_genomes_project 6 83245400 83246236 + Mogs protein_coding retained_intron MGP_CASTEiJ_T0077055.1 MGP_CASTEiJ_G0029653.1 mouse_genomes_project 6 31646322 31670055 - MGP_CASTEiJ_P0077055 Slc35b4 protein_coding protein_coding MGP_CASTEiJ_T0077056.1 MGP_CASTEiJ_G0029653.1 mouse_genomes_project 6 31649686 31656393 - Slc35b4 protein_coding retained_intron MGP_CASTEiJ_T0077057.1 MGP_CASTEiJ_G0029653.1 mouse_genomes_project 6 31651052 31669914 - Slc35b4 protein_coding retained_intron MGP_CASTEiJ_T0077058.1 MGP_CASTEiJ_G0029653.1 mouse_genomes_project 6 31653431 31670026 - MGP_CASTEiJ_P0077058 Slc35b4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0014933.1 MGP_CASTEiJ_G0013096.1 mouse_genomes_project 6 90500982 90501942 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000263.1 MGP_CASTEiJ_G0000212.1 mouse_genomes_project 6 67116876 67434673 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0004979.1 MGP_CASTEiJ_G0004259.1 mouse_genomes_project 6 147418691 147439733 + Sox5os2 antisense antisense MGP_CASTEiJ_T0080971.1 MGP_CASTEiJ_G0030520.1 mouse_genomes_project 6 143176322 143359559 + MGP_CASTEiJ_P0080971 Plekha5 protein_coding protein_coding MGP_CASTEiJ_T0080972.1 MGP_CASTEiJ_G0030520.1 mouse_genomes_project 6 143176424 143349344 + MGP_CASTEiJ_P0080972 Plekha5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080973.1 MGP_CASTEiJ_G0030520.1 mouse_genomes_project 6 143176425 143346316 + MGP_CASTEiJ_P0080973 Plekha5 protein_coding protein_coding MGP_CASTEiJ_T0080974.1 MGP_CASTEiJ_G0030520.1 mouse_genomes_project 6 143185358 143307212 + MGP_CASTEiJ_P0080974 Plekha5 protein_coding protein_coding MGP_CASTEiJ_T0080975.1 MGP_CASTEiJ_G0030520.1 mouse_genomes_project 6 143271283 143307213 + MGP_CASTEiJ_P0080975 Plekha5 protein_coding protein_coding MGP_CASTEiJ_T0080976.1 MGP_CASTEiJ_G0030520.1 mouse_genomes_project 6 143279754 143346316 + MGP_CASTEiJ_P0080976 Plekha5 protein_coding protein_coding MGP_CASTEiJ_T0080977.1 MGP_CASTEiJ_G0030520.1 mouse_genomes_project 6 143289713 143359559 + Plekha5 protein_coding processed_transcript MGP_CASTEiJ_T0080978.1 MGP_CASTEiJ_G0030520.1 mouse_genomes_project 6 143298405 143359559 + MGP_CASTEiJ_P0080978 Plekha5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080979.1 MGP_CASTEiJ_G0030520.1 mouse_genomes_project 6 143298431 143312151 + Plekha5 protein_coding processed_transcript MGP_CASTEiJ_T0080980.1 MGP_CASTEiJ_G0030520.1 mouse_genomes_project 6 143298435 143359559 + MGP_CASTEiJ_P0080980 Plekha5 protein_coding protein_coding MGP_CASTEiJ_T0080981.1 MGP_CASTEiJ_G0030520.1 mouse_genomes_project 6 143298570 143359559 + MGP_CASTEiJ_P0080981 Plekha5 protein_coding protein_coding MGP_CASTEiJ_T0080982.1 MGP_CASTEiJ_G0030520.1 mouse_genomes_project 6 143322707 143359565 + MGP_CASTEiJ_P0080982 Plekha5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0080983.1 MGP_CASTEiJ_G0030520.1 mouse_genomes_project 6 143323539 143339433 + Plekha5 protein_coding retained_intron MGP_CASTEiJ_T0080984.1 MGP_CASTEiJ_G0030520.1 mouse_genomes_project 6 143334269 143339440 + Plekha5 protein_coding retained_intron MGP_CASTEiJ_T0080985.1 MGP_CASTEiJ_G0030520.1 mouse_genomes_project 6 143334457 143359559 + MGP_CASTEiJ_P0080985 Plekha5 protein_coding protein_coding MGP_CASTEiJ_T0080986.1 MGP_CASTEiJ_G0030520.1 mouse_genomes_project 6 143341508 143343978 + Plekha5 protein_coding retained_intron MGP_CASTEiJ_T0080173.1 MGP_CASTEiJ_G0030327.1 mouse_genomes_project 6 125026258 125045966 + MGP_CASTEiJ_P0080173 Clec4a2 protein_coding protein_coding MGP_CASTEiJ_T0080174.1 MGP_CASTEiJ_G0030327.1 mouse_genomes_project 6 125044983 125050248 + MGP_CASTEiJ_P0080174 Clec4a2 protein_coding protein_coding MGP_CASTEiJ_T0080175.1 MGP_CASTEiJ_G0030327.1 mouse_genomes_project 6 125044985 125063344 + MGP_CASTEiJ_P0080175 Clec4a2 protein_coding protein_coding MGP_CASTEiJ_T0080176.1 MGP_CASTEiJ_G0030327.1 mouse_genomes_project 6 125045762 125063512 + MGP_CASTEiJ_P0080176 Clec4a2 protein_coding protein_coding MGP_CASTEiJ_T0079112.1 MGP_CASTEiJ_G0030130.1 mouse_genomes_project 6 91799802 91818430 + MGP_CASTEiJ_P0079112 Hdac11 protein_coding protein_coding MGP_CASTEiJ_T0079113.1 MGP_CASTEiJ_G0030130.1 mouse_genomes_project 6 91799870 91802769 + Hdac11 protein_coding retained_intron MGP_CASTEiJ_T0079114.1 MGP_CASTEiJ_G0030130.1 mouse_genomes_project 6 91799878 91810286 + MGP_CASTEiJ_P0079114 Hdac11 protein_coding protein_coding MGP_CASTEiJ_T0079115.1 MGP_CASTEiJ_G0030130.1 mouse_genomes_project 6 91800216 91811612 + Hdac11 protein_coding retained_intron MGP_CASTEiJ_T0079116.1 MGP_CASTEiJ_G0030130.1 mouse_genomes_project 6 91800449 91817268 + MGP_CASTEiJ_P0079116 Hdac11 protein_coding protein_coding MGP_CASTEiJ_T0079117.1 MGP_CASTEiJ_G0030130.1 mouse_genomes_project 6 91809414 91813218 + MGP_CASTEiJ_P0079117 Hdac11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079118.1 MGP_CASTEiJ_G0030130.1 mouse_genomes_project 6 91815539 91817035 + Hdac11 protein_coding retained_intron MGP_CASTEiJ_T0008402.1 MGP_CASTEiJ_G0006805.1 mouse_genomes_project 6 58491804 58495717 - lincRNA lincRNA MGP_CASTEiJ_T0101222.1 MGP_CASTEiJ_G0038135.1 mouse_genomes_project 6 151754915 151755052 - Gm23456 snoRNA snoRNA MGP_CASTEiJ_T0015072.1 MGP_CASTEiJ_G0013235.1 mouse_genomes_project 6 136132738 136133406 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014862.1 MGP_CASTEiJ_G0013025.1 mouse_genomes_project 6 65778486 65778652 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008524.1 MGP_CASTEiJ_G0006902.1 mouse_genomes_project 6 134461465 134462331 + Gm43974 lincRNA lincRNA MGP_CASTEiJ_T0001881.1 MGP_CASTEiJ_G0001802.1 mouse_genomes_project 6 30489287 30492315 - TEC TEC MGP_CASTEiJ_T0078318.1 MGP_CASTEiJ_G0029969.1 mouse_genomes_project 6 72234854 72267767 - MGP_CASTEiJ_P0078318 Elmod3 protein_coding protein_coding MGP_CASTEiJ_T0078319.1 MGP_CASTEiJ_G0029969.1 mouse_genomes_project 6 72234866 72267768 - MGP_CASTEiJ_P0078319 Elmod3 protein_coding protein_coding MGP_CASTEiJ_T0078320.1 MGP_CASTEiJ_G0029969.1 mouse_genomes_project 6 72236497 72267819 - MGP_CASTEiJ_P0078320 Elmod3 protein_coding protein_coding MGP_CASTEiJ_T0078321.1 MGP_CASTEiJ_G0029969.1 mouse_genomes_project 6 72238291 72267785 - MGP_CASTEiJ_P0078321 Elmod3 protein_coding protein_coding MGP_CASTEiJ_T0078322.1 MGP_CASTEiJ_G0029969.1 mouse_genomes_project 6 72253487 72264431 - Elmod3 protein_coding processed_transcript MGP_CASTEiJ_T0078323.1 MGP_CASTEiJ_G0029969.1 mouse_genomes_project 6 72257009 72267837 - MGP_CASTEiJ_P0078323 Elmod3 protein_coding protein_coding MGP_CASTEiJ_T0079391.1 MGP_CASTEiJ_G0030185.1 mouse_genomes_project 6 109370850 109386964 + MGP_CASTEiJ_P0079391 Setmar protein_coding protein_coding MGP_CASTEiJ_T0079392.1 MGP_CASTEiJ_G0030185.1 mouse_genomes_project 6 109370867 109386964 + MGP_CASTEiJ_P0079392 Setmar protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0004799.1 MGP_CASTEiJ_G0004130.1 mouse_genomes_project 6 36836495 36840215 - 1700025N23Rik antisense antisense MGP_CASTEiJ_T0079852.1 MGP_CASTEiJ_G0030268.1 mouse_genomes_project 6 119536615 119540747 - MGP_CASTEiJ_P0079852 Fxyd4 protein_coding protein_coding MGP_CASTEiJ_T0079853.1 MGP_CASTEiJ_G0030268.1 mouse_genomes_project 6 119536616 119540390 - MGP_CASTEiJ_P0079853 Fxyd4 protein_coding protein_coding MGP_CASTEiJ_T0079854.1 MGP_CASTEiJ_G0030268.1 mouse_genomes_project 6 119536616 119540390 - MGP_CASTEiJ_P0079854 Fxyd4 protein_coding protein_coding MGP_CASTEiJ_T0079855.1 MGP_CASTEiJ_G0030268.1 mouse_genomes_project 6 119536616 119540390 - MGP_CASTEiJ_P0079855 Fxyd4 protein_coding protein_coding MGP_CASTEiJ_T0079856.1 MGP_CASTEiJ_G0030268.1 mouse_genomes_project 6 119536616 119540390 - MGP_CASTEiJ_P0079856 Fxyd4 protein_coding protein_coding MGP_CASTEiJ_T0079857.1 MGP_CASTEiJ_G0030268.1 mouse_genomes_project 6 119536785 119540390 - MGP_CASTEiJ_P0079857 Fxyd4 protein_coding protein_coding MGP_CASTEiJ_T0079858.1 MGP_CASTEiJ_G0030268.1 mouse_genomes_project 6 119537975 119540390 - Fxyd4 protein_coding retained_intron MGP_CASTEiJ_T0079859.1 MGP_CASTEiJ_G0030268.1 mouse_genomes_project 6 119537975 119540390 - Fxyd4 protein_coding retained_intron MGP_CASTEiJ_T0079860.1 MGP_CASTEiJ_G0030268.1 mouse_genomes_project 6 119537975 119538997 - Fxyd4 protein_coding retained_intron MGP_CASTEiJ_T0080405.1 MGP_CASTEiJ_G0030371.1 mouse_genomes_project 6 127303358 127304661 - Ncapd2 protein_coding retained_intron MGP_CASTEiJ_T0080406.1 MGP_CASTEiJ_G0030371.1 mouse_genomes_project 6 127303358 127327192 - MGP_CASTEiJ_P0080406 Ncapd2 protein_coding protein_coding MGP_CASTEiJ_T0080407.1 MGP_CASTEiJ_G0030371.1 mouse_genomes_project 6 127305177 127306465 - Ncapd2 protein_coding retained_intron MGP_CASTEiJ_T0080408.1 MGP_CASTEiJ_G0030371.1 mouse_genomes_project 6 127306315 127307181 - Ncapd2 protein_coding retained_intron MGP_CASTEiJ_T0080409.1 MGP_CASTEiJ_G0030371.1 mouse_genomes_project 6 127306426 127309290 - Ncapd2 protein_coding retained_intron MGP_CASTEiJ_T0080410.1 MGP_CASTEiJ_G0030371.1 mouse_genomes_project 6 127307206 127309272 - Ncapd2 protein_coding retained_intron MGP_CASTEiJ_T0080411.1 MGP_CASTEiJ_G0030371.1 mouse_genomes_project 6 127308736 127309904 - Ncapd2 protein_coding retained_intron MGP_CASTEiJ_T0080412.1 MGP_CASTEiJ_G0030371.1 mouse_genomes_project 6 127308831 127312092 - Ncapd2 protein_coding retained_intron MGP_CASTEiJ_T0080413.1 MGP_CASTEiJ_G0030371.1 mouse_genomes_project 6 127311198 127312743 - Ncapd2 protein_coding retained_intron MGP_CASTEiJ_T0080414.1 MGP_CASTEiJ_G0030371.1 mouse_genomes_project 6 127312566 127314798 - Ncapd2 protein_coding retained_intron MGP_CASTEiJ_T0080415.1 MGP_CASTEiJ_G0030371.1 mouse_genomes_project 6 127319669 127327094 - MGP_CASTEiJ_P0080415 Ncapd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080416.1 MGP_CASTEiJ_G0030371.1 mouse_genomes_project 6 127319893 127321963 - Ncapd2 protein_coding retained_intron MGP_CASTEiJ_T0080417.1 MGP_CASTEiJ_G0030371.1 mouse_genomes_project 6 127321169 127326981 - MGP_CASTEiJ_P0080417 Ncapd2 protein_coding protein_coding MGP_CASTEiJ_T0010471.1 MGP_CASTEiJ_G0008659.1 mouse_genomes_project 6 50596320 50596405 - Mir196b miRNA miRNA MGP_CASTEiJ_T0014734.1 MGP_CASTEiJ_G0012897.1 mouse_genomes_project 6 13109910 13110159 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001911.1 MGP_CASTEiJ_G0001832.1 mouse_genomes_project 6 44421881 44424413 + TEC TEC MGP_CASTEiJ_T0079867.1 MGP_CASTEiJ_G0030271.1 mouse_genomes_project 6 119774133 119826474 - MGP_CASTEiJ_P0079867 Ret protein_coding protein_coding MGP_CASTEiJ_T0079868.1 MGP_CASTEiJ_G0030271.1 mouse_genomes_project 6 119776964 119827059 - MGP_CASTEiJ_P0079868 Ret protein_coding protein_coding MGP_CASTEiJ_T0101195.1 MGP_CASTEiJ_G0038108.1 mouse_genomes_project 6 98700805 98700948 + Gm23703 snoRNA snoRNA MGP_CASTEiJ_T0000291.1 MGP_CASTEiJ_G0000240.1 mouse_genomes_project 6 69244748 69245226 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0080019.1 MGP_CASTEiJ_G0030292.1 mouse_genomes_project 6 122281409 122286235 - MGP_CASTEiJ_P0080019 Cecr6 protein_coding protein_coding MGP_CASTEiJ_T0099988.1 MGP_CASTEiJ_G0036901.1 mouse_genomes_project 6 138903360 138903445 + Gm25882 snRNA snRNA MGP_CASTEiJ_T0004776.1 MGP_CASTEiJ_G0004110.1 mouse_genomes_project 6 14774824 14775425 - Gm26738 antisense antisense MGP_CASTEiJ_T0080370.1 MGP_CASTEiJ_G0030365.1 mouse_genomes_project 6 127169636 127174328 + MGP_CASTEiJ_P0080370 Acrbp protein_coding protein_coding MGP_CASTEiJ_T0080371.1 MGP_CASTEiJ_G0030365.1 mouse_genomes_project 6 127169894 127171459 + MGP_CASTEiJ_P0080371 Acrbp protein_coding protein_coding MGP_CASTEiJ_T0080372.1 MGP_CASTEiJ_G0030365.1 mouse_genomes_project 6 127169906 127183493 + MGP_CASTEiJ_P0080372 Acrbp protein_coding protein_coding MGP_CASTEiJ_T0080373.1 MGP_CASTEiJ_G0030365.1 mouse_genomes_project 6 127169914 127171509 + MGP_CASTEiJ_P0080373 Acrbp protein_coding protein_coding MGP_CASTEiJ_T0080374.1 MGP_CASTEiJ_G0030365.1 mouse_genomes_project 6 127171814 127174327 + Acrbp protein_coding processed_transcript MGP_CASTEiJ_T0080375.1 MGP_CASTEiJ_G0030365.1 mouse_genomes_project 6 127173935 127175364 + Acrbp protein_coding retained_intron MGP_CASTEiJ_T0080376.1 MGP_CASTEiJ_G0030365.1 mouse_genomes_project 6 127182414 127183468 + Acrbp protein_coding retained_intron MGP_CASTEiJ_T0008399.1 MGP_CASTEiJ_G0006802.1 mouse_genomes_project 6 53917147 53933643 + 6430584L05Rik lincRNA lincRNA MGP_CASTEiJ_T0078368.1 MGP_CASTEiJ_G0029980.1 mouse_genomes_project 6 78299549 78301792 + MGP_CASTEiJ_P0078368 Reg3b protein_coding protein_coding MGP_CASTEiJ_T0078369.1 MGP_CASTEiJ_G0029980.1 mouse_genomes_project 6 78299753 78302360 + MGP_CASTEiJ_P0078369 Reg3b protein_coding protein_coding MGP_CASTEiJ_T0078370.1 MGP_CASTEiJ_G0029980.1 mouse_genomes_project 6 78299790 78301802 + MGP_CASTEiJ_P0078370 Reg3b protein_coding protein_coding MGP_CASTEiJ_T0078371.1 MGP_CASTEiJ_G0029980.1 mouse_genomes_project 6 78301424 78302312 + Reg3b protein_coding retained_intron MGP_CASTEiJ_T0076359.1 MGP_CASTEiJ_G0029526.1 mouse_genomes_project 6 1410962 1492116 - MGP_CASTEiJ_P0076359 Sgce protein_coding protein_coding MGP_CASTEiJ_T0076360.1 MGP_CASTEiJ_G0029526.1 mouse_genomes_project 6 1410962 1492144 - MGP_CASTEiJ_P0076360 Sgce protein_coding protein_coding MGP_CASTEiJ_T0076361.1 MGP_CASTEiJ_G0029526.1 mouse_genomes_project 6 1410966 1492147 - MGP_CASTEiJ_P0076361 Sgce protein_coding protein_coding MGP_CASTEiJ_T0076362.1 MGP_CASTEiJ_G0029526.1 mouse_genomes_project 6 1410966 1492097 - MGP_CASTEiJ_P0076362 Sgce protein_coding protein_coding MGP_CASTEiJ_T0076363.1 MGP_CASTEiJ_G0029526.1 mouse_genomes_project 6 1410996 1492056 - MGP_CASTEiJ_P0076363 Sgce protein_coding protein_coding MGP_CASTEiJ_T0076364.1 MGP_CASTEiJ_G0029526.1 mouse_genomes_project 6 1411030 1492064 - MGP_CASTEiJ_P0076364 Sgce protein_coding protein_coding MGP_CASTEiJ_T0076365.1 MGP_CASTEiJ_G0029526.1 mouse_genomes_project 6 1411030 1492128 - MGP_CASTEiJ_P0076365 Sgce protein_coding protein_coding MGP_CASTEiJ_T0076366.1 MGP_CASTEiJ_G0029526.1 mouse_genomes_project 6 1415296 1492097 - Sgce protein_coding retained_intron MGP_CASTEiJ_T0076367.1 MGP_CASTEiJ_G0029526.1 mouse_genomes_project 6 1427345 1492020 - Sgce protein_coding retained_intron MGP_CASTEiJ_T0076368.1 MGP_CASTEiJ_G0029526.1 mouse_genomes_project 6 1430155 1492010 - Sgce protein_coding processed_transcript MGP_CASTEiJ_T0076369.1 MGP_CASTEiJ_G0029526.1 mouse_genomes_project 6 1430327 1492003 - MGP_CASTEiJ_P0076369 Sgce protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076370.1 MGP_CASTEiJ_G0029526.1 mouse_genomes_project 6 1446246 1452123 - Sgce protein_coding retained_intron MGP_CASTEiJ_T0076371.1 MGP_CASTEiJ_G0029526.1 mouse_genomes_project 6 1480849 1483925 - Sgce protein_coding retained_intron MGP_CASTEiJ_T0101223.1 MGP_CASTEiJ_G0038136.1 mouse_genomes_project 6 152109357 152109479 + Gm25539 snoRNA snoRNA MGP_CASTEiJ_T0078185.1 MGP_CASTEiJ_G0029946.1 mouse_genomes_project 6 70930222 70935078 + Cd8a protein_coding retained_intron MGP_CASTEiJ_T0078186.1 MGP_CASTEiJ_G0029946.1 mouse_genomes_project 6 70930227 70936553 + MGP_CASTEiJ_P0078186 Cd8a protein_coding protein_coding MGP_CASTEiJ_T0079477.1 MGP_CASTEiJ_G0030201.1 mouse_genomes_project 6 114731914 114778608 + MGP_CASTEiJ_P0079477 protein_coding protein_coding MGP_CASTEiJ_T0079478.1 MGP_CASTEiJ_G0030201.1 mouse_genomes_project 6 114731922 114768005 + MGP_CASTEiJ_P0079478 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079479.1 MGP_CASTEiJ_G0030201.1 mouse_genomes_project 6 114731968 114778603 + MGP_CASTEiJ_P0079479 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079480.1 MGP_CASTEiJ_G0030201.1 mouse_genomes_project 6 114735165 114752815 + MGP_CASTEiJ_P0079480 protein_coding protein_coding MGP_CASTEiJ_T0079481.1 MGP_CASTEiJ_G0030201.1 mouse_genomes_project 6 114749884 114766720 + MGP_CASTEiJ_P0079481 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079482.1 MGP_CASTEiJ_G0030201.1 mouse_genomes_project 6 114751602 114763233 + MGP_CASTEiJ_P0079482 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079483.1 MGP_CASTEiJ_G0030201.1 mouse_genomes_project 6 114756398 114775154 + MGP_CASTEiJ_P0079483 protein_coding protein_coding MGP_CASTEiJ_T0079484.1 MGP_CASTEiJ_G0030201.1 mouse_genomes_project 6 114763166 114778135 + MGP_CASTEiJ_P0079484 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079485.1 MGP_CASTEiJ_G0030201.1 mouse_genomes_project 6 114763197 114778412 + MGP_CASTEiJ_P0079485 protein_coding protein_coding MGP_CASTEiJ_T0079486.1 MGP_CASTEiJ_G0030201.1 mouse_genomes_project 6 114766759 114778303 + MGP_CASTEiJ_P0079486 protein_coding protein_coding MGP_CASTEiJ_T0014748.1 MGP_CASTEiJ_G0012911.1 mouse_genomes_project 6 19929087 19930273 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081234.1 MGP_CASTEiJ_G0030567.1 mouse_genomes_project 6 149986529 149990637 - MGP_CASTEiJ_P0081234 1700034J05Rik protein_coding protein_coding MGP_CASTEiJ_T0081235.1 MGP_CASTEiJ_G0030567.1 mouse_genomes_project 6 149987501 149990629 - MGP_CASTEiJ_P0081235 1700034J05Rik protein_coding protein_coding MGP_CASTEiJ_T0001978.1 MGP_CASTEiJ_G0001899.1 mouse_genomes_project 6 86660156 86662519 - TEC TEC MGP_CASTEiJ_T0004837.1 MGP_CASTEiJ_G0004159.1 mouse_genomes_project 6 66570381 66571236 - antisense antisense MGP_CASTEiJ_T0008303.1 MGP_CASTEiJ_G0006738.1 mouse_genomes_project 6 13422370 13456145 + Gm43998 lincRNA lincRNA MGP_CASTEiJ_T0077779.1 MGP_CASTEiJ_G0029836.1 mouse_genomes_project 6 50524197 50526614 - MGP_CASTEiJ_P0077779 Hoxa2 protein_coding protein_coding MGP_CASTEiJ_T0011299.1 MGP_CASTEiJ_G0009487.1 mouse_genomes_project 6 14850718 14850855 + Gm27444 misc_RNA misc_RNA MGP_CASTEiJ_T0078336.1 MGP_CASTEiJ_G0029973.1 mouse_genomes_project 6 72529461 72591259 - MGP_CASTEiJ_P0078336 Kcmf1 protein_coding protein_coding MGP_CASTEiJ_T0078337.1 MGP_CASTEiJ_G0029973.1 mouse_genomes_project 6 72529577 72591333 - MGP_CASTEiJ_P0078337 Kcmf1 protein_coding protein_coding MGP_CASTEiJ_T0078338.1 MGP_CASTEiJ_G0029973.1 mouse_genomes_project 6 72533761 72536803 - Kcmf1 protein_coding retained_intron MGP_CASTEiJ_T0078339.1 MGP_CASTEiJ_G0029973.1 mouse_genomes_project 6 72535625 72546127 - Kcmf1 protein_coding processed_transcript MGP_CASTEiJ_T0008485.1 MGP_CASTEiJ_G0006870.1 mouse_genomes_project 6 114421538 114423834 + Gm44081 lincRNA lincRNA MGP_CASTEiJ_T0014774.1 MGP_CASTEiJ_G0012937.1 mouse_genomes_project 6 37480075 37480591 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077401.1 MGP_CASTEiJ_G0029741.1 mouse_genomes_project 6 40024622 40025579 + MGP_CASTEiJ_P0077401 Tas2r139 protein_coding protein_coding MGP_CASTEiJ_T0011319.1 MGP_CASTEiJ_G0009507.1 mouse_genomes_project 6 50629894 50629954 + Gm27280 misc_RNA misc_RNA MGP_CASTEiJ_T0078653.1 MGP_CASTEiJ_G0030035.1 mouse_genomes_project 6 85374177 85391324 - protein_coding lincRNA MGP_CASTEiJ_T0076565.1 MGP_CASTEiJ_G0029565.1 mouse_genomes_project 6 13962722 14002864 + MGP_CASTEiJ_P0076565 Tes protein_coding unknown_likely_coding MGP_CASTEiJ_T0076566.1 MGP_CASTEiJ_G0029565.1 mouse_genomes_project 6 13962769 14003798 + MGP_CASTEiJ_P0076566 Tes protein_coding protein_coding MGP_CASTEiJ_T0076567.1 MGP_CASTEiJ_G0029565.1 mouse_genomes_project 6 13962780 13966571 + Tes protein_coding retained_intron MGP_CASTEiJ_T0076568.1 MGP_CASTEiJ_G0029565.1 mouse_genomes_project 6 13962788 13994203 + MGP_CASTEiJ_P0076568 Tes protein_coding protein_coding MGP_CASTEiJ_T0076569.1 MGP_CASTEiJ_G0029565.1 mouse_genomes_project 6 13962812 13985625 + Tes protein_coding processed_transcript MGP_CASTEiJ_T0076570.1 MGP_CASTEiJ_G0029565.1 mouse_genomes_project 6 13962844 14003803 + MGP_CASTEiJ_P0076570 Tes protein_coding protein_coding MGP_CASTEiJ_T0014749.1 MGP_CASTEiJ_G0012912.1 mouse_genomes_project 6 19969527 19970223 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002075.1 MGP_CASTEiJ_G0001995.1 mouse_genomes_project 6 130078512 130080774 - TEC TEC MGP_CASTEiJ_T0002092.1 MGP_CASTEiJ_G0002012.1 mouse_genomes_project 6 139331277 139331810 + TEC TEC MGP_CASTEiJ_T0004819.1 MGP_CASTEiJ_G0004145.1 mouse_genomes_project 6 50534669 50536109 + Gm15050 antisense antisense MGP_CASTEiJ_T0014943.1 MGP_CASTEiJ_G0013106.1 mouse_genomes_project 6 95193746 95194137 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077258.1 MGP_CASTEiJ_G0029691.1 mouse_genomes_project 6 36859896 36895684 - MGP_CASTEiJ_P0077258 Parp12 protein_coding protein_coding MGP_CASTEiJ_T0077259.1 MGP_CASTEiJ_G0029691.1 mouse_genomes_project 6 36862500 36864540 - Parp12 protein_coding retained_intron MGP_CASTEiJ_T0014755.1 MGP_CASTEiJ_G0012918.1 mouse_genomes_project 6 24005315 24006056 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080640.1 MGP_CASTEiJ_G0030427.1 mouse_genomes_project 6 131910033 131927460 + MGP_CASTEiJ_P0080640 Clec9a protein_coding protein_coding MGP_CASTEiJ_T0080641.1 MGP_CASTEiJ_G0030427.1 mouse_genomes_project 6 131910034 131925273 + MGP_CASTEiJ_P0080641 Clec9a protein_coding protein_coding MGP_CASTEiJ_T0080642.1 MGP_CASTEiJ_G0030427.1 mouse_genomes_project 6 131910126 131925062 + MGP_CASTEiJ_P0080642 Clec9a protein_coding protein_coding MGP_CASTEiJ_T0080643.1 MGP_CASTEiJ_G0030427.1 mouse_genomes_project 6 131910126 131925062 + MGP_CASTEiJ_P0080643 Clec9a protein_coding protein_coding MGP_CASTEiJ_T0002109.1 MGP_CASTEiJ_G0002029.1 mouse_genomes_project 6 148905773 148907676 + TEC TEC MGP_CASTEiJ_T0010499.1 MGP_CASTEiJ_G0008687.1 mouse_genomes_project 6 119538532 119538657 - Gm25535 miRNA miRNA MGP_CASTEiJ_T0015098.1 MGP_CASTEiJ_G0013261.1 mouse_genomes_project 6 150065904 150066363 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080785.1 MGP_CASTEiJ_G0030483.1 mouse_genomes_project 6 137272072 137278914 + MGP_CASTEiJ_P0080785 Cdkn1b protein_coding protein_coding MGP_CASTEiJ_T0080786.1 MGP_CASTEiJ_G0030483.1 mouse_genomes_project 6 137272072 137278914 + MGP_CASTEiJ_P0080786 Cdkn1b protein_coding protein_coding MGP_CASTEiJ_T0080787.1 MGP_CASTEiJ_G0030483.1 mouse_genomes_project 6 137272185 137277006 + MGP_CASTEiJ_P0080787 Cdkn1b protein_coding protein_coding MGP_CASTEiJ_T0081163.1 MGP_CASTEiJ_G0030554.1 mouse_genomes_project 6 148786483 148863328 + MGP_CASTEiJ_P0081163 Rassf8 protein_coding protein_coding MGP_CASTEiJ_T0081164.1 MGP_CASTEiJ_G0030554.1 mouse_genomes_project 6 148790307 148857442 + MGP_CASTEiJ_P0081164 Rassf8 protein_coding protein_coding MGP_CASTEiJ_T0081165.1 MGP_CASTEiJ_G0030554.1 mouse_genomes_project 6 148850666 148859839 + MGP_CASTEiJ_P0081165 Rassf8 protein_coding protein_coding MGP_CASTEiJ_T0081166.1 MGP_CASTEiJ_G0030554.1 mouse_genomes_project 6 148862192 148863323 + MGP_CASTEiJ_P0081166 Rassf8 protein_coding protein_coding MGP_CASTEiJ_T0102385.1 MGP_CASTEiJ_G0039110.1 mouse_genomes_project 6 40971838 40972154 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008491.1 MGP_CASTEiJ_G0006876.1 mouse_genomes_project 6 119068273 119073107 + Gm43983 lincRNA lincRNA MGP_CASTEiJ_T0011300.1 MGP_CASTEiJ_G0009488.1 mouse_genomes_project 6 14852182 14852302 + Gm27402 misc_RNA misc_RNA MGP_CASTEiJ_T0001879.1 MGP_CASTEiJ_G0001800.1 mouse_genomes_project 6 28540101 28542399 - TEC TEC MGP_CASTEiJ_T0002112.1 MGP_CASTEiJ_G0002032.1 mouse_genomes_project 6 149801775 149803004 + TEC TEC MGP_CASTEiJ_T0000274.1 MGP_CASTEiJ_G0000223.1 mouse_genomes_project 6 67900147 67900449 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0081013.1 MGP_CASTEiJ_G0030528.1 mouse_genomes_project 6 144723246 144773549 - MGP_CASTEiJ_P0081013 Slco1a1 protein_coding protein_coding MGP_CASTEiJ_T0081014.1 MGP_CASTEiJ_G0030528.1 mouse_genomes_project 6 144723826 144773701 - MGP_CASTEiJ_P0081014 Slco1a1 protein_coding protein_coding MGP_CASTEiJ_T0081015.1 MGP_CASTEiJ_G0030528.1 mouse_genomes_project 6 144746898 144773555 - Slco1a1 protein_coding retained_intron MGP_CASTEiJ_T0000264.1 MGP_CASTEiJ_G0000213.1 mouse_genomes_project 6 67116876 67434673 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0081331.1 MGP_CASTEiJ_G0030583.1 mouse_genomes_project 6 152487383 152504950 + MGP_CASTEiJ_P0081331 2810474O19Rik protein_coding protein_coding MGP_CASTEiJ_T0081332.1 MGP_CASTEiJ_G0030583.1 mouse_genomes_project 6 152487397 152513946 + MGP_CASTEiJ_P0081332 2810474O19Rik protein_coding protein_coding MGP_CASTEiJ_T0081333.1 MGP_CASTEiJ_G0030583.1 mouse_genomes_project 6 152487425 152507256 + MGP_CASTEiJ_P0081333 2810474O19Rik protein_coding protein_coding MGP_CASTEiJ_T0081334.1 MGP_CASTEiJ_G0030583.1 mouse_genomes_project 6 152487443 152513213 + MGP_CASTEiJ_P0081334 2810474O19Rik protein_coding protein_coding MGP_CASTEiJ_T0081335.1 MGP_CASTEiJ_G0030583.1 mouse_genomes_project 6 152487443 152513213 + MGP_CASTEiJ_P0081335 2810474O19Rik protein_coding protein_coding MGP_CASTEiJ_T0081336.1 MGP_CASTEiJ_G0030583.1 mouse_genomes_project 6 152487542 152488425 + 2810474O19Rik protein_coding retained_intron MGP_CASTEiJ_T0081337.1 MGP_CASTEiJ_G0030583.1 mouse_genomes_project 6 152487697 152503768 + MGP_CASTEiJ_P0081337 2810474O19Rik protein_coding protein_coding MGP_CASTEiJ_T0081338.1 MGP_CASTEiJ_G0030583.1 mouse_genomes_project 6 152489385 152492331 + 2810474O19Rik protein_coding retained_intron MGP_CASTEiJ_T0081339.1 MGP_CASTEiJ_G0030583.1 mouse_genomes_project 6 152495271 152504246 + MGP_CASTEiJ_P0081339 2810474O19Rik protein_coding protein_coding MGP_CASTEiJ_T0081340.1 MGP_CASTEiJ_G0030583.1 mouse_genomes_project 6 152502910 152504052 + MGP_CASTEiJ_P0081340 2810474O19Rik protein_coding protein_coding MGP_CASTEiJ_T0081341.1 MGP_CASTEiJ_G0030583.1 mouse_genomes_project 6 152503736 152513941 + MGP_CASTEiJ_P0081341 2810474O19Rik protein_coding protein_coding MGP_CASTEiJ_T0015030.1 MGP_CASTEiJ_G0013193.1 mouse_genomes_project 6 126382984 126383257 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078701.1 MGP_CASTEiJ_G0030045.1 mouse_genomes_project 6 85815364 85817697 - MGP_CASTEiJ_P0078701 Egr4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002490.1 MGP_CASTEiJ_G0002400.1 mouse_genomes_project 6 39369521 39369574 + MGP_CASTEiJ_P0002490 Trbj1-6 TR_J_gene TR_J_gene MGP_CASTEiJ_T0011330.1 MGP_CASTEiJ_G0009518.1 mouse_genomes_project 6 100905426 100905748 - Gm24248 misc_RNA misc_RNA MGP_CASTEiJ_T0014714.1 MGP_CASTEiJ_G0012877.1 mouse_genomes_project 6 4347490 4347851 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015001.1 MGP_CASTEiJ_G0013164.1 mouse_genomes_project 6 118541635 118542044 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008347.1 MGP_CASTEiJ_G0006769.1 mouse_genomes_project 6 32178677 32181234 - Gm13861 lincRNA lincRNA MGP_CASTEiJ_T0017521.1 MGP_CASTEiJ_G0014949.1 mouse_genomes_project 6 52703920 52713079 - Gm15527 processed_transcript retained_intron MGP_CASTEiJ_T0017522.1 MGP_CASTEiJ_G0014949.1 mouse_genomes_project 6 52706342 52737226 - Gm15527 processed_transcript antisense MGP_CASTEiJ_T0017523.1 MGP_CASTEiJ_G0014949.1 mouse_genomes_project 6 52706358 52737228 - Gm15527 processed_transcript antisense MGP_CASTEiJ_T0002031.1 MGP_CASTEiJ_G0001952.1 mouse_genomes_project 6 101730475 101731923 - TEC TEC MGP_CASTEiJ_T0102417.1 MGP_CASTEiJ_G0039142.1 mouse_genomes_project 6 90861369 90862318 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0078893.1 MGP_CASTEiJ_G0030088.1 mouse_genomes_project 6 88297805 88325685 - MGP_CASTEiJ_P0078893 Isy1 protein_coding protein_coding MGP_CASTEiJ_T0078894.1 MGP_CASTEiJ_G0030088.1 mouse_genomes_project 6 88304833 88325625 - MGP_CASTEiJ_P0078894 Isy1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078895.1 MGP_CASTEiJ_G0030088.1 mouse_genomes_project 6 88304903 88305896 - Isy1 protein_coding retained_intron MGP_CASTEiJ_T0078896.1 MGP_CASTEiJ_G0030088.1 mouse_genomes_project 6 88305722 88325587 - MGP_CASTEiJ_P0078896 Isy1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078897.1 MGP_CASTEiJ_G0030088.1 mouse_genomes_project 6 88308607 88325643 - Isy1 protein_coding retained_intron MGP_CASTEiJ_T0078898.1 MGP_CASTEiJ_G0030088.1 mouse_genomes_project 6 88310366 88325600 - Isy1 protein_coding retained_intron MGP_CASTEiJ_T0078899.1 MGP_CASTEiJ_G0030088.1 mouse_genomes_project 6 88312668 88325634 - MGP_CASTEiJ_P0078899 Isy1 protein_coding protein_coding MGP_CASTEiJ_T0078900.1 MGP_CASTEiJ_G0030088.1 mouse_genomes_project 6 88320413 88325643 - Isy1 protein_coding retained_intron MGP_CASTEiJ_T0080306.1 MGP_CASTEiJ_G0030354.1 mouse_genomes_project 6 126937350 126943378 - MGP_CASTEiJ_P0080306 Gnb3 protein_coding protein_coding MGP_CASTEiJ_T0080307.1 MGP_CASTEiJ_G0030354.1 mouse_genomes_project 6 126937357 126943060 - Gnb3 protein_coding retained_intron MGP_CASTEiJ_T0080308.1 MGP_CASTEiJ_G0030354.1 mouse_genomes_project 6 126937789 126939400 - Gnb3 protein_coding processed_transcript MGP_CASTEiJ_T0080309.1 MGP_CASTEiJ_G0030354.1 mouse_genomes_project 6 126942201 126943186 - Gnb3 protein_coding retained_intron MGP_CASTEiJ_T0008426.1 MGP_CASTEiJ_G0006828.1 mouse_genomes_project 6 82056231 82057222 - Gm44202 lincRNA lincRNA MGP_CASTEiJ_T0076584.1 MGP_CASTEiJ_G0029568.1 mouse_genomes_project 6 14371858 14489616 + MGP_CASTEiJ_P0076584 Met protein_coding protein_coding MGP_CASTEiJ_T0076585.1 MGP_CASTEiJ_G0029568.1 mouse_genomes_project 6 14371885 14401131 + MGP_CASTEiJ_P0076585 Met protein_coding protein_coding MGP_CASTEiJ_T0076586.1 MGP_CASTEiJ_G0029568.1 mouse_genomes_project 6 14372096 14487863 + MGP_CASTEiJ_P0076586 Met protein_coding protein_coding MGP_CASTEiJ_T0076587.1 MGP_CASTEiJ_G0029568.1 mouse_genomes_project 6 14372165 14455444 + Met protein_coding retained_intron MGP_CASTEiJ_T0076588.1 MGP_CASTEiJ_G0029568.1 mouse_genomes_project 6 14400624 14485902 + MGP_CASTEiJ_P0076588 Met protein_coding protein_coding MGP_CASTEiJ_T0076589.1 MGP_CASTEiJ_G0029568.1 mouse_genomes_project 6 14449549 14461271 + MGP_CASTEiJ_P0076589 Met protein_coding protein_coding MGP_CASTEiJ_T0076590.1 MGP_CASTEiJ_G0029568.1 mouse_genomes_project 6 14461033 14467363 + MGP_CASTEiJ_P0076590 Met protein_coding protein_coding MGP_CASTEiJ_T0078173.1 MGP_CASTEiJ_G0029943.1 mouse_genomes_project 6 70732504 70737695 + MGP_CASTEiJ_P0078173 Fabp1 protein_coding protein_coding MGP_CASTEiJ_T0077379.1 MGP_CASTEiJ_G0029732.1 mouse_genomes_project 6 39496029 39526956 - MGP_CASTEiJ_P0077379 Trpv5 protein_coding protein_coding MGP_CASTEiJ_T0077380.1 MGP_CASTEiJ_G0029732.1 mouse_genomes_project 6 39496985 39550412 - MGP_CASTEiJ_P0077380 Trpv5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077381.1 MGP_CASTEiJ_G0029732.1 mouse_genomes_project 6 39496985 39526842 - MGP_CASTEiJ_P0077381 Trpv5 protein_coding protein_coding MGP_CASTEiJ_T0015012.1 MGP_CASTEiJ_G0013175.1 mouse_genomes_project 6 123436912 123437300 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081008.1 MGP_CASTEiJ_G0030526.1 mouse_genomes_project 6 144510090 144572574 - MGP_CASTEiJ_P0081008 Gm5724 protein_coding protein_coding MGP_CASTEiJ_T0080939.1 MGP_CASTEiJ_G0030513.1 mouse_genomes_project 6 141005328 141245784 - MGP_CASTEiJ_P0080939 Lmo3 protein_coding protein_coding MGP_CASTEiJ_T0080940.1 MGP_CASTEiJ_G0030513.1 mouse_genomes_project 6 141006608 141069982 - MGP_CASTEiJ_P0080940 Lmo3 protein_coding protein_coding MGP_CASTEiJ_T0080941.1 MGP_CASTEiJ_G0030513.1 mouse_genomes_project 6 141007361 141073062 - MGP_CASTEiJ_P0080941 Lmo3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080942.1 MGP_CASTEiJ_G0030513.1 mouse_genomes_project 6 141007990 141071476 - MGP_CASTEiJ_P0080942 Lmo3 protein_coding protein_coding MGP_CASTEiJ_T0080943.1 MGP_CASTEiJ_G0030513.1 mouse_genomes_project 6 141007994 141071419 - MGP_CASTEiJ_P0080943 Lmo3 protein_coding protein_coding MGP_CASTEiJ_T0080944.1 MGP_CASTEiJ_G0030513.1 mouse_genomes_project 6 141008298 141075608 - MGP_CASTEiJ_P0080944 Lmo3 protein_coding protein_coding MGP_CASTEiJ_T0080945.1 MGP_CASTEiJ_G0030513.1 mouse_genomes_project 6 141023805 141071501 - MGP_CASTEiJ_P0080945 Lmo3 protein_coding protein_coding MGP_CASTEiJ_T0080946.1 MGP_CASTEiJ_G0030513.1 mouse_genomes_project 6 141065366 141075262 - MGP_CASTEiJ_P0080946 Lmo3 protein_coding protein_coding MGP_CASTEiJ_T0076354.1 MGP_CASTEiJ_G0029525.1 mouse_genomes_project 6 1330250 1377651 + MGP_CASTEiJ_P0076354 Casd1 protein_coding protein_coding MGP_CASTEiJ_T0076355.1 MGP_CASTEiJ_G0029525.1 mouse_genomes_project 6 1330360 1357157 + MGP_CASTEiJ_P0076355 Casd1 protein_coding protein_coding MGP_CASTEiJ_T0076356.1 MGP_CASTEiJ_G0029525.1 mouse_genomes_project 6 1330557 1340434 + MGP_CASTEiJ_P0076356 Casd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076357.1 MGP_CASTEiJ_G0029525.1 mouse_genomes_project 6 1330614 1353987 + MGP_CASTEiJ_P0076357 Casd1 protein_coding protein_coding MGP_CASTEiJ_T0076358.1 MGP_CASTEiJ_G0029525.1 mouse_genomes_project 6 1364547 1375277 + MGP_CASTEiJ_P0076358 Casd1 protein_coding protein_coding MGP_CASTEiJ_T0102373.1 MGP_CASTEiJ_G0039098.1 mouse_genomes_project 6 31900267 31901077 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011326.1 MGP_CASTEiJ_G0009514.1 mouse_genomes_project 6 83896514 83896708 + Gm27893 misc_RNA misc_RNA MGP_CASTEiJ_T0080661.1 MGP_CASTEiJ_G0030432.1 mouse_genomes_project 6 132084000 132093895 + MGP_CASTEiJ_P0080661 Klre1 protein_coding protein_coding MGP_CASTEiJ_T0080662.1 MGP_CASTEiJ_G0030432.1 mouse_genomes_project 6 132084346 132093845 + MGP_CASTEiJ_P0080662 Klre1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080663.1 MGP_CASTEiJ_G0030432.1 mouse_genomes_project 6 132089527 132093892 + Klre1 protein_coding retained_intron MGP_CASTEiJ_T0014721.1 MGP_CASTEiJ_G0012884.1 mouse_genomes_project 6 7014049 7015112 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014758.1 MGP_CASTEiJ_G0012921.1 mouse_genomes_project 6 27300922 27302076 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008434.1 MGP_CASTEiJ_G0006831.1 mouse_genomes_project 6 84447115 84515380 + Gm44127 lincRNA lincRNA MGP_CASTEiJ_T0079700.1 MGP_CASTEiJ_G0030238.1 mouse_genomes_project 6 117112425 117132856 + MGP_CASTEiJ_P0079700 Mkrn2 protein_coding protein_coding MGP_CASTEiJ_T0079701.1 MGP_CASTEiJ_G0030238.1 mouse_genomes_project 6 117112484 117123720 + Mkrn2 protein_coding processed_transcript MGP_CASTEiJ_T0079702.1 MGP_CASTEiJ_G0030238.1 mouse_genomes_project 6 117121665 117122731 + Mkrn2 protein_coding retained_intron MGP_CASTEiJ_T0079180.1 MGP_CASTEiJ_G0030142.1 mouse_genomes_project 6 92782273 92862593 + MGP_CASTEiJ_P0079180 Nr2c2 protein_coding protein_coding MGP_CASTEiJ_T0079181.1 MGP_CASTEiJ_G0030142.1 mouse_genomes_project 6 92783316 92857089 + MGP_CASTEiJ_P0079181 Nr2c2 protein_coding protein_coding MGP_CASTEiJ_T0079182.1 MGP_CASTEiJ_G0030142.1 mouse_genomes_project 6 92822176 92823993 + MGP_CASTEiJ_P0079182 Nr2c2 protein_coding protein_coding MGP_CASTEiJ_T0079183.1 MGP_CASTEiJ_G0030142.1 mouse_genomes_project 6 92822775 92826407 + Nr2c2 protein_coding retained_intron MGP_CASTEiJ_T0079184.1 MGP_CASTEiJ_G0030142.1 mouse_genomes_project 6 92823956 92858051 + MGP_CASTEiJ_P0079184 Nr2c2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079185.1 MGP_CASTEiJ_G0030142.1 mouse_genomes_project 6 92831858 92842698 + Nr2c2 protein_coding processed_transcript MGP_CASTEiJ_T0079186.1 MGP_CASTEiJ_G0030142.1 mouse_genomes_project 6 92843050 92844897 + Nr2c2 protein_coding retained_intron MGP_CASTEiJ_T0079187.1 MGP_CASTEiJ_G0030142.1 mouse_genomes_project 6 92850247 92864178 + Nr2c2 protein_coding processed_transcript MGP_CASTEiJ_T0076947.1 MGP_CASTEiJ_G0029635.1 mouse_genomes_project 6 27872400 27902973 - MGP_CASTEiJ_P0076947 Tmem209 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076948.1 MGP_CASTEiJ_G0029635.1 mouse_genomes_project 6 27874137 27902984 - MGP_CASTEiJ_P0076948 Tmem209 protein_coding protein_coding MGP_CASTEiJ_T0076949.1 MGP_CASTEiJ_G0029635.1 mouse_genomes_project 6 27874366 27902985 - MGP_CASTEiJ_P0076949 Tmem209 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076950.1 MGP_CASTEiJ_G0029635.1 mouse_genomes_project 6 27874576 27903052 - MGP_CASTEiJ_P0076950 Tmem209 protein_coding protein_coding MGP_CASTEiJ_T0076951.1 MGP_CASTEiJ_G0029635.1 mouse_genomes_project 6 27875763 27902987 - MGP_CASTEiJ_P0076951 Tmem209 protein_coding protein_coding MGP_CASTEiJ_T0076952.1 MGP_CASTEiJ_G0029635.1 mouse_genomes_project 6 27876149 27902984 - MGP_CASTEiJ_P0076952 Tmem209 protein_coding protein_coding MGP_CASTEiJ_T0076953.1 MGP_CASTEiJ_G0029635.1 mouse_genomes_project 6 27883697 27885525 - Tmem209 protein_coding retained_intron MGP_CASTEiJ_T0076954.1 MGP_CASTEiJ_G0029635.1 mouse_genomes_project 6 27895655 27903018 - MGP_CASTEiJ_P0076954 Tmem209 protein_coding protein_coding MGP_CASTEiJ_T0076955.1 MGP_CASTEiJ_G0029635.1 mouse_genomes_project 6 27898006 27902991 - Tmem209 protein_coding retained_intron MGP_CASTEiJ_T0076956.1 MGP_CASTEiJ_G0029635.1 mouse_genomes_project 6 27899018 27902993 - MGP_CASTEiJ_P0076956 Tmem209 protein_coding protein_coding MGP_CASTEiJ_T0078117.1 MGP_CASTEiJ_G0029930.1 mouse_genomes_project 6 66206985 66208018 - MGP_CASTEiJ_P0078117 protein_coding protein_coding MGP_CASTEiJ_T0015006.1 MGP_CASTEiJ_G0013169.1 mouse_genomes_project 6 121643754 121644638 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077418.1 MGP_CASTEiJ_G0029746.1 mouse_genomes_project 6 40147943 40176546 + MGP_CASTEiJ_P0077418 Clcn1 protein_coding protein_coding MGP_CASTEiJ_T0077419.1 MGP_CASTEiJ_G0029746.1 mouse_genomes_project 6 40148025 40176068 + MGP_CASTEiJ_P0077419 Clcn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077420.1 MGP_CASTEiJ_G0029746.1 mouse_genomes_project 6 40148114 40176119 + MGP_CASTEiJ_P0077420 Clcn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077421.1 MGP_CASTEiJ_G0029746.1 mouse_genomes_project 6 40148114 40176068 + MGP_CASTEiJ_P0077421 Clcn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077422.1 MGP_CASTEiJ_G0029746.1 mouse_genomes_project 6 40148114 40176068 + MGP_CASTEiJ_P0077422 Clcn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077423.1 MGP_CASTEiJ_G0029746.1 mouse_genomes_project 6 40148114 40176068 + MGP_CASTEiJ_P0077423 Clcn1 protein_coding protein_coding MGP_CASTEiJ_T0077424.1 MGP_CASTEiJ_G0029746.1 mouse_genomes_project 6 40148124 40175847 + MGP_CASTEiJ_P0077424 Clcn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077425.1 MGP_CASTEiJ_G0029746.1 mouse_genomes_project 6 40160165 40177641 + Clcn1 protein_coding processed_transcript MGP_CASTEiJ_T0077426.1 MGP_CASTEiJ_G0029746.1 mouse_genomes_project 6 40172023 40174952 + MGP_CASTEiJ_P0077426 Clcn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077427.1 MGP_CASTEiJ_G0029746.1 mouse_genomes_project 6 40174379 40175232 + Clcn1 protein_coding retained_intron MGP_CASTEiJ_T0078152.1 MGP_CASTEiJ_G0029934.1 mouse_genomes_project 6 66686767 66736654 - MGP_CASTEiJ_P0078152 Il12rb2 protein_coding protein_coding MGP_CASTEiJ_T0078153.1 MGP_CASTEiJ_G0029934.1 mouse_genomes_project 6 66687404 66780279 - MGP_CASTEiJ_P0078153 Il12rb2 protein_coding protein_coding MGP_CASTEiJ_T0077694.1 MGP_CASTEiJ_G0029820.1 mouse_genomes_project 6 47388388 47408426 - MGP_CASTEiJ_P0077694 Tra2a protein_coding protein_coding MGP_CASTEiJ_T0077695.1 MGP_CASTEiJ_G0029820.1 mouse_genomes_project 6 47388388 47408427 - MGP_CASTEiJ_P0077695 Tra2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077696.1 MGP_CASTEiJ_G0029820.1 mouse_genomes_project 6 47388392 47408449 - Tra2a protein_coding retained_intron MGP_CASTEiJ_T0077697.1 MGP_CASTEiJ_G0029820.1 mouse_genomes_project 6 47388392 47408446 - MGP_CASTEiJ_P0077697 Tra2a protein_coding protein_coding MGP_CASTEiJ_T0077698.1 MGP_CASTEiJ_G0029820.1 mouse_genomes_project 6 47404655 47408446 - Tra2a protein_coding retained_intron MGP_CASTEiJ_T0014720.1 MGP_CASTEiJ_G0012883.1 mouse_genomes_project 6 5974922 5975235 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080070.1 MGP_CASTEiJ_G0030302.1 mouse_genomes_project 6 123096995 123125101 + MGP_CASTEiJ_P0080070 Usp18 protein_coding protein_coding MGP_CASTEiJ_T0080071.1 MGP_CASTEiJ_G0030302.1 mouse_genomes_project 6 123106401 123108361 + Usp18 protein_coding retained_intron MGP_CASTEiJ_T0080072.1 MGP_CASTEiJ_G0030302.1 mouse_genomes_project 6 123114059 123115818 + Usp18 protein_coding retained_intron MGP_CASTEiJ_T0080073.1 MGP_CASTEiJ_G0030302.1 mouse_genomes_project 6 123121133 123122049 + MGP_CASTEiJ_P0080073 Usp18 protein_coding protein_coding MGP_CASTEiJ_T0099937.1 MGP_CASTEiJ_G0036850.1 mouse_genomes_project 6 11278431 11278537 - Gm23013 snRNA snRNA MGP_CASTEiJ_T0004790.1 MGP_CASTEiJ_G0004122.1 mouse_genomes_project 6 29957631 29962144 + Plxna4os1 antisense antisense MGP_CASTEiJ_T0077021.1 MGP_CASTEiJ_G0029647.1 mouse_genomes_project 6 28938587 28982998 - MGP_CASTEiJ_P0077021 Podxl protein_coding unknown_likely_coding MGP_CASTEiJ_T0077022.1 MGP_CASTEiJ_G0029647.1 mouse_genomes_project 6 28938589 28983291 - MGP_CASTEiJ_P0077022 Podxl protein_coding protein_coding MGP_CASTEiJ_T0077023.1 MGP_CASTEiJ_G0029647.1 mouse_genomes_project 6 28942081 28943401 - Podxl protein_coding processed_transcript MGP_CASTEiJ_T0078645.1 MGP_CASTEiJ_G0030034.1 mouse_genomes_project 6 84863361 85320233 - MGP_CASTEiJ_P0078645 Exoc6b protein_coding protein_coding MGP_CASTEiJ_T0078646.1 MGP_CASTEiJ_G0030034.1 mouse_genomes_project 6 85062499 85320233 - Exoc6b protein_coding retained_intron MGP_CASTEiJ_T0078647.1 MGP_CASTEiJ_G0030034.1 mouse_genomes_project 6 85063373 85320177 - Exoc6b protein_coding retained_intron MGP_CASTEiJ_T0078648.1 MGP_CASTEiJ_G0030034.1 mouse_genomes_project 6 85081929 85320222 - MGP_CASTEiJ_P0078648 Exoc6b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078649.1 MGP_CASTEiJ_G0030034.1 mouse_genomes_project 6 85122178 85126151 - Exoc6b protein_coding retained_intron MGP_CASTEiJ_T0078650.1 MGP_CASTEiJ_G0030034.1 mouse_genomes_project 6 85185479 85320222 - Exoc6b protein_coding processed_transcript MGP_CASTEiJ_T0078651.1 MGP_CASTEiJ_G0030034.1 mouse_genomes_project 6 85228578 85320188 - Exoc6b protein_coding retained_intron MGP_CASTEiJ_T0078652.1 MGP_CASTEiJ_G0030034.1 mouse_genomes_project 6 85248444 85320195 - Exoc6b protein_coding retained_intron MGP_CASTEiJ_T0081009.1 MGP_CASTEiJ_G0030527.1 mouse_genomes_project 6 144604666 144673596 - MGP_CASTEiJ_P0081009 Slco1a4 protein_coding protein_coding MGP_CASTEiJ_T0081010.1 MGP_CASTEiJ_G0030527.1 mouse_genomes_project 6 144605953 144662907 - MGP_CASTEiJ_P0081010 Slco1a4 protein_coding protein_coding MGP_CASTEiJ_T0081011.1 MGP_CASTEiJ_G0030527.1 mouse_genomes_project 6 144651623 144673624 - MGP_CASTEiJ_P0081011 Slco1a4 protein_coding protein_coding MGP_CASTEiJ_T0081012.1 MGP_CASTEiJ_G0030527.1 mouse_genomes_project 6 144668459 144671103 - Slco1a4 protein_coding retained_intron MGP_CASTEiJ_T0004931.1 MGP_CASTEiJ_G0004216.1 mouse_genomes_project 6 115566025 115616163 + Gm15083 antisense antisense MGP_CASTEiJ_T0080687.1 MGP_CASTEiJ_G0030441.1 mouse_genomes_project 6 132332324 132362230 - MGP_CASTEiJ_P0080687 Klra17 protein_coding protein_coding MGP_CASTEiJ_T0080688.1 MGP_CASTEiJ_G0030441.1 mouse_genomes_project 6 132332334 132362232 - MGP_CASTEiJ_P0080688 Klra17 protein_coding protein_coding MGP_CASTEiJ_T0004830.1 MGP_CASTEiJ_G0004152.1 mouse_genomes_project 6 53169547 53170535 - Gm28402 antisense antisense MGP_CASTEiJ_T0002008.1 MGP_CASTEiJ_G0001929.1 mouse_genomes_project 6 91004138 91006702 + TEC TEC MGP_CASTEiJ_T0099945.1 MGP_CASTEiJ_G0036858.1 mouse_genomes_project 6 32824574 32824730 + Gm23435 snRNA snRNA MGP_CASTEiJ_T0015103.1 MGP_CASTEiJ_G0013266.1 mouse_genomes_project 6 152187073 152187396 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079864.1 MGP_CASTEiJ_G0030270.1 mouse_genomes_project 6 119726015 119748770 - Csgalnact2 protein_coding retained_intron MGP_CASTEiJ_T0079865.1 MGP_CASTEiJ_G0030270.1 mouse_genomes_project 6 119726015 119759483 - MGP_CASTEiJ_P0079865 Csgalnact2 protein_coding protein_coding MGP_CASTEiJ_T0079866.1 MGP_CASTEiJ_G0030270.1 mouse_genomes_project 6 119727899 119745571 - MGP_CASTEiJ_P0079866 Csgalnact2 protein_coding protein_coding MGP_CASTEiJ_T0001958.1 MGP_CASTEiJ_G0001879.1 mouse_genomes_project 6 77607968 77614423 - TEC TEC MGP_CASTEiJ_T0078712.1 MGP_CASTEiJ_G0030049.1 mouse_genomes_project 6 86139027 86139713 - MGP_CASTEiJ_P0078712 protein_coding protein_coding MGP_CASTEiJ_T0077993.1 MGP_CASTEiJ_G0029895.1 mouse_genomes_project 6 56257463 56298101 + MGP_CASTEiJ_P0077993 Lancl2 protein_coding protein_coding MGP_CASTEiJ_T0077994.1 MGP_CASTEiJ_G0029895.1 mouse_genomes_project 6 56257559 56297138 + MGP_CASTEiJ_P0077994 Lancl2 protein_coding protein_coding MGP_CASTEiJ_T0077995.1 MGP_CASTEiJ_G0029895.1 mouse_genomes_project 6 56257983 56298106 + MGP_CASTEiJ_P0077995 Lancl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077996.1 MGP_CASTEiJ_G0029895.1 mouse_genomes_project 6 56258010 56298100 + MGP_CASTEiJ_P0077996 Lancl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077997.1 MGP_CASTEiJ_G0029895.1 mouse_genomes_project 6 56258034 56298106 + MGP_CASTEiJ_P0077997 Lancl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077859.1 MGP_CASTEiJ_G0029857.1 mouse_genomes_project 6 52894985 52977631 + MGP_CASTEiJ_P0077859 Wipf3 protein_coding protein_coding MGP_CASTEiJ_T0077860.1 MGP_CASTEiJ_G0029857.1 mouse_genomes_project 6 52894985 52977631 + MGP_CASTEiJ_P0077860 Wipf3 protein_coding protein_coding MGP_CASTEiJ_T0077861.1 MGP_CASTEiJ_G0029857.1 mouse_genomes_project 6 52921761 52977634 + MGP_CASTEiJ_P0077861 Wipf3 protein_coding protein_coding MGP_CASTEiJ_T0077862.1 MGP_CASTEiJ_G0029857.1 mouse_genomes_project 6 52921761 52977634 + MGP_CASTEiJ_P0077862 Wipf3 protein_coding protein_coding MGP_CASTEiJ_T0077863.1 MGP_CASTEiJ_G0029857.1 mouse_genomes_project 6 52941807 52956885 + Wipf3 protein_coding processed_transcript MGP_CASTEiJ_T0077864.1 MGP_CASTEiJ_G0029857.1 mouse_genomes_project 6 52960421 52964064 + Wipf3 protein_coding retained_intron MGP_CASTEiJ_T0000273.1 MGP_CASTEiJ_G0000222.1 mouse_genomes_project 6 67829650 67830381 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0008503.1 MGP_CASTEiJ_G0006886.1 mouse_genomes_project 6 123107803 123126869 - Gm44148 lincRNA lincRNA MGP_CASTEiJ_T0015040.1 MGP_CASTEiJ_G0013203.1 mouse_genomes_project 6 129413461 129413981 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008552.1 MGP_CASTEiJ_G0006921.1 mouse_genomes_project 6 149698208 149708121 + 4930479D17Rik lincRNA lincRNA MGP_CASTEiJ_T0080653.1 MGP_CASTEiJ_G0030430.1 mouse_genomes_project 6 132012669 132019816 + MGP_CASTEiJ_P0080653 Tmem52b protein_coding protein_coding MGP_CASTEiJ_T0080654.1 MGP_CASTEiJ_G0030430.1 mouse_genomes_project 6 132012727 132017542 + MGP_CASTEiJ_P0080654 Tmem52b protein_coding protein_coding MGP_CASTEiJ_T0080655.1 MGP_CASTEiJ_G0030430.1 mouse_genomes_project 6 132015897 132017573 + Tmem52b protein_coding retained_intron MGP_CASTEiJ_T0080656.1 MGP_CASTEiJ_G0030430.1 mouse_genomes_project 6 132016639 132017623 + Tmem52b protein_coding retained_intron MGP_CASTEiJ_T0004968.1 MGP_CASTEiJ_G0004250.1 mouse_genomes_project 6 138313687 138323215 + Gm14330 antisense antisense MGP_CASTEiJ_T0080235.1 MGP_CASTEiJ_G0030343.1 mouse_genomes_project 6 126811861 126813492 + Phb2 protein_coding retained_intron MGP_CASTEiJ_T0080236.1 MGP_CASTEiJ_G0030343.1 mouse_genomes_project 6 126811861 126816586 + Phb2 protein_coding retained_intron MGP_CASTEiJ_T0080237.1 MGP_CASTEiJ_G0030343.1 mouse_genomes_project 6 126811861 126812594 + Phb2 protein_coding retained_intron MGP_CASTEiJ_T0080238.1 MGP_CASTEiJ_G0030343.1 mouse_genomes_project 6 126811861 126816586 + MGP_CASTEiJ_P0080238 Phb2 protein_coding protein_coding MGP_CASTEiJ_T0080239.1 MGP_CASTEiJ_G0030343.1 mouse_genomes_project 6 126812291 126814437 + MGP_CASTEiJ_P0080239 Phb2 protein_coding protein_coding MGP_CASTEiJ_T0080240.1 MGP_CASTEiJ_G0030343.1 mouse_genomes_project 6 126812647 126816276 + MGP_CASTEiJ_P0080240 Phb2 protein_coding protein_coding MGP_CASTEiJ_T0080241.1 MGP_CASTEiJ_G0030343.1 mouse_genomes_project 6 126814977 126816586 + Phb2 protein_coding retained_intron MGP_CASTEiJ_T0080242.1 MGP_CASTEiJ_G0030343.1 mouse_genomes_project 6 126814992 126816172 + Phb2 protein_coding processed_transcript MGP_CASTEiJ_T0077617.1 MGP_CASTEiJ_G0029801.1 mouse_genomes_project 6 46741747 46750175 + MGP_CASTEiJ_P0077617 AI854703 protein_coding protein_coding MGP_CASTEiJ_T0077618.1 MGP_CASTEiJ_G0029801.1 mouse_genomes_project 6 46742205 46744446 + MGP_CASTEiJ_P0077618 AI854703 protein_coding protein_coding MGP_CASTEiJ_T0077619.1 MGP_CASTEiJ_G0029801.1 mouse_genomes_project 6 46742263 46744446 + MGP_CASTEiJ_P0077619 AI854703 protein_coding protein_coding MGP_CASTEiJ_T0077620.1 MGP_CASTEiJ_G0029801.1 mouse_genomes_project 6 46742917 46750179 + MGP_CASTEiJ_P0077620 AI854703 protein_coding protein_coding MGP_CASTEiJ_T0014790.1 MGP_CASTEiJ_G0012953.1 mouse_genomes_project 6 44640440 44641431 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077978.1 MGP_CASTEiJ_G0029887.1 mouse_genomes_project 6 55816910 55817813 + MGP_CASTEiJ_P0077978 Vmn1r13 protein_coding protein_coding MGP_CASTEiJ_T0010493.1 MGP_CASTEiJ_G0008681.1 mouse_genomes_project 6 109806678 109806739 + Mir7661 miRNA miRNA MGP_CASTEiJ_T0014917.1 MGP_CASTEiJ_G0013080.1 mouse_genomes_project 6 84037656 84038406 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010458.1 MGP_CASTEiJ_G0008646.1 mouse_genomes_project 6 28143439 28143537 + Mir335 miRNA miRNA MGP_CASTEiJ_T0010510.1 MGP_CASTEiJ_G0008698.1 mouse_genomes_project 6 130091484 130091544 - Mir7233 miRNA miRNA MGP_CASTEiJ_T0079822.1 MGP_CASTEiJ_G0030262.1 mouse_genomes_project 6 118232940 118235146 + MGP_CASTEiJ_P0079822 8430408G22Rik protein_coding protein_coding MGP_CASTEiJ_T0079823.1 MGP_CASTEiJ_G0030262.1 mouse_genomes_project 6 118232959 118235146 + MGP_CASTEiJ_P0079823 8430408G22Rik protein_coding protein_coding MGP_CASTEiJ_T0079824.1 MGP_CASTEiJ_G0030262.1 mouse_genomes_project 6 118233027 118234246 + MGP_CASTEiJ_P0079824 8430408G22Rik protein_coding protein_coding MGP_CASTEiJ_T0078053.1 MGP_CASTEiJ_G0029915.1 mouse_genomes_project 6 60048095 60066317 + Mmrn1 protein_coding retained_intron MGP_CASTEiJ_T0078054.1 MGP_CASTEiJ_G0029915.1 mouse_genomes_project 6 60064674 60111961 + MGP_CASTEiJ_P0078054 Mmrn1 protein_coding protein_coding MGP_CASTEiJ_T0078055.1 MGP_CASTEiJ_G0029915.1 mouse_genomes_project 6 60064676 60111961 + MGP_CASTEiJ_P0078055 Mmrn1 protein_coding protein_coding MGP_CASTEiJ_T0078056.1 MGP_CASTEiJ_G0029915.1 mouse_genomes_project 6 60092126 60130669 + MGP_CASTEiJ_P0078056 Mmrn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0078584.1 MGP_CASTEiJ_G0030027.1 mouse_genomes_project 6 83954586 83960273 + MGP_CASTEiJ_P0078584 Ankrd53 protein_coding protein_coding MGP_CASTEiJ_T0078585.1 MGP_CASTEiJ_G0030027.1 mouse_genomes_project 6 83954628 83959984 + MGP_CASTEiJ_P0078585 Ankrd53 protein_coding protein_coding MGP_CASTEiJ_T0080598.1 MGP_CASTEiJ_G0030412.1 mouse_genomes_project 6 130956448 130960069 - BC048546 protein_coding retained_intron MGP_CASTEiJ_T0080599.1 MGP_CASTEiJ_G0030412.1 mouse_genomes_project 6 130956454 130999428 - MGP_CASTEiJ_P0080599 BC048546 protein_coding protein_coding MGP_CASTEiJ_T0080600.1 MGP_CASTEiJ_G0030412.1 mouse_genomes_project 6 130965050 130969870 - BC048546 protein_coding retained_intron MGP_CASTEiJ_T0080601.1 MGP_CASTEiJ_G0030412.1 mouse_genomes_project 6 130975035 130976270 - BC048546 protein_coding retained_intron MGP_CASTEiJ_T0080602.1 MGP_CASTEiJ_G0030412.1 mouse_genomes_project 6 130992014 130994570 - BC048546 protein_coding retained_intron MGP_CASTEiJ_T0015063.1 MGP_CASTEiJ_G0013226.1 mouse_genomes_project 6 134315575 134315785 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079548.1 MGP_CASTEiJ_G0030210.1 mouse_genomes_project 6 114936858 114949015 - MGP_CASTEiJ_P0079548 Cidec protein_coding protein_coding MGP_CASTEiJ_T0079549.1 MGP_CASTEiJ_G0030210.1 mouse_genomes_project 6 114940916 114948894 - MGP_CASTEiJ_P0079549 Cidec protein_coding protein_coding MGP_CASTEiJ_T0014888.1 MGP_CASTEiJ_G0013051.1 mouse_genomes_project 6 71480767 71481561 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015007.1 MGP_CASTEiJ_G0013170.1 mouse_genomes_project 6 122377537 122377869 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077079.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32122482 32311828 + MGP_CASTEiJ_P0077079 Cald1 protein_coding protein_coding MGP_CASTEiJ_T0077080.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32122494 32288669 + MGP_CASTEiJ_P0077080 Cald1 protein_coding protein_coding MGP_CASTEiJ_T0077081.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32122526 32219563 + Cald1 protein_coding retained_intron MGP_CASTEiJ_T0077082.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32122526 32274942 + Cald1 protein_coding retained_intron MGP_CASTEiJ_T0077083.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32122546 32311840 + MGP_CASTEiJ_P0077083 Cald1 protein_coding protein_coding MGP_CASTEiJ_T0077084.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32122547 32311840 + MGP_CASTEiJ_P0077084 Cald1 protein_coding protein_coding MGP_CASTEiJ_T0077085.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32122602 32191487 + Cald1 protein_coding retained_intron MGP_CASTEiJ_T0077086.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32242278 32311847 + MGP_CASTEiJ_P0077086 Cald1 protein_coding protein_coding MGP_CASTEiJ_T0077087.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32242326 32243589 + Cald1 protein_coding retained_intron MGP_CASTEiJ_T0077088.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32242326 32311842 + MGP_CASTEiJ_P0077088 Cald1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077089.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32242470 32310074 + MGP_CASTEiJ_P0077089 Cald1 protein_coding protein_coding MGP_CASTEiJ_T0077090.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32279625 32291005 + MGP_CASTEiJ_P0077090 Cald1 protein_coding protein_coding MGP_CASTEiJ_T0077091.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32279654 32290915 + MGP_CASTEiJ_P0077091 Cald1 protein_coding protein_coding MGP_CASTEiJ_T0077092.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32279680 32290915 + MGP_CASTEiJ_P0077092 Cald1 protein_coding protein_coding MGP_CASTEiJ_T0077093.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32280059 32298527 + MGP_CASTEiJ_P0077093 Cald1 protein_coding protein_coding MGP_CASTEiJ_T0077094.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32281459 32288588 + Cald1 protein_coding retained_intron MGP_CASTEiJ_T0077095.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32299237 32303204 + Cald1 protein_coding retained_intron MGP_CASTEiJ_T0077096.1 MGP_CASTEiJ_G0029659.1 mouse_genomes_project 6 32301325 32303011 + Cald1 protein_coding retained_intron MGP_CASTEiJ_T0014815.1 MGP_CASTEiJ_G0012978.1 mouse_genomes_project 6 50475639 50476281 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014811.1 MGP_CASTEiJ_G0012974.1 mouse_genomes_project 6 48035066 48037695 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014794.1 MGP_CASTEiJ_G0012957.1 mouse_genomes_project 6 45752412 45752602 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011316.1 MGP_CASTEiJ_G0009504.1 mouse_genomes_project 6 50613640 50613873 + Gm27817 misc_RNA misc_RNA MGP_CASTEiJ_T0008338.1 MGP_CASTEiJ_G0006761.1 mouse_genomes_project 6 29091636 29095554 - lincRNA lincRNA MGP_CASTEiJ_T0008415.1 MGP_CASTEiJ_G0006817.1 mouse_genomes_project 6 70910665 70917507 - Gm44175 lincRNA lincRNA MGP_CASTEiJ_T0076960.1 MGP_CASTEiJ_G0029637.1 mouse_genomes_project 6 27935046 27957826 + MGP_CASTEiJ_P0076960 Cpa2 protein_coding protein_coding MGP_CASTEiJ_T0076961.1 MGP_CASTEiJ_G0029637.1 mouse_genomes_project 6 27935106 27937937 + Cpa2 protein_coding retained_intron MGP_CASTEiJ_T0076962.1 MGP_CASTEiJ_G0029637.1 mouse_genomes_project 6 27935134 27940568 + Cpa2 protein_coding processed_transcript MGP_CASTEiJ_T0076963.1 MGP_CASTEiJ_G0029637.1 mouse_genomes_project 6 27936676 27938457 + Cpa2 protein_coding retained_intron MGP_CASTEiJ_T0076964.1 MGP_CASTEiJ_G0029637.1 mouse_genomes_project 6 27937380 27945516 + Cpa2 protein_coding retained_intron MGP_CASTEiJ_T0076965.1 MGP_CASTEiJ_G0029637.1 mouse_genomes_project 6 27937949 27942750 + Cpa2 protein_coding retained_intron MGP_CASTEiJ_T0076966.1 MGP_CASTEiJ_G0029637.1 mouse_genomes_project 6 27940101 27940613 + Cpa2 protein_coding processed_transcript MGP_CASTEiJ_T0076967.1 MGP_CASTEiJ_G0029637.1 mouse_genomes_project 6 27945362 27957598 + Cpa2 protein_coding retained_intron MGP_CASTEiJ_T0080088.1 MGP_CASTEiJ_G0030305.1 mouse_genomes_project 6 123239173 123347042 - MGP_CASTEiJ_P0080088 Iqsec3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080089.1 MGP_CASTEiJ_G0030305.1 mouse_genomes_project 6 123239173 123347084 - MGP_CASTEiJ_P0080089 Iqsec3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080090.1 MGP_CASTEiJ_G0030305.1 mouse_genomes_project 6 123239173 123347097 - MGP_CASTEiJ_P0080090 Iqsec3 protein_coding protein_coding MGP_CASTEiJ_T0080091.1 MGP_CASTEiJ_G0030305.1 mouse_genomes_project 6 123246197 123347111 - MGP_CASTEiJ_P0080091 Iqsec3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0080092.1 MGP_CASTEiJ_G0030305.1 mouse_genomes_project 6 123273494 123347097 - MGP_CASTEiJ_P0080092 Iqsec3 protein_coding protein_coding MGP_CASTEiJ_T0002090.1 MGP_CASTEiJ_G0002010.1 mouse_genomes_project 6 137703440 137703696 - TEC TEC MGP_CASTEiJ_T0001865.1 MGP_CASTEiJ_G0001786.1 mouse_genomes_project 6 18826793 18830868 + TEC TEC MGP_CASTEiJ_T0101173.1 MGP_CASTEiJ_G0038086.1 mouse_genomes_project 6 55137721 55137853 - Gm22493 snoRNA snoRNA MGP_CASTEiJ_T0002078.1 MGP_CASTEiJ_G0001998.1 mouse_genomes_project 6 130746300 130746765 + TEC TEC MGP_CASTEiJ_T0011344.1 MGP_CASTEiJ_G0009532.1 mouse_genomes_project 6 148286370 148286700 - Gm22793 misc_RNA misc_RNA MGP_CASTEiJ_T0077581.1 MGP_CASTEiJ_G0029792.1 mouse_genomes_project 6 46555268 46609678 + MGP_CASTEiJ_P0077581 Sspo protein_coding protein_coding MGP_CASTEiJ_T0077582.1 MGP_CASTEiJ_G0029792.1 mouse_genomes_project 6 46555268 46609693 + MGP_CASTEiJ_P0077582 Sspo protein_coding protein_coding MGP_CASTEiJ_T0077583.1 MGP_CASTEiJ_G0029792.1 mouse_genomes_project 6 46555268 46609700 + MGP_CASTEiJ_P0077583 Sspo protein_coding unknown_likely_coding MGP_CASTEiJ_T0077584.1 MGP_CASTEiJ_G0029792.1 mouse_genomes_project 6 46555268 46609700 + MGP_CASTEiJ_P0077584 Sspo protein_coding unknown_likely_coding MGP_CASTEiJ_T0077585.1 MGP_CASTEiJ_G0029792.1 mouse_genomes_project 6 46589088 46595978 + Sspo protein_coding retained_intron MGP_CASTEiJ_T0077586.1 MGP_CASTEiJ_G0029792.1 mouse_genomes_project 6 46596534 46609693 + MGP_CASTEiJ_P0077586 Sspo protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077587.1 MGP_CASTEiJ_G0029792.1 mouse_genomes_project 6 46602240 46604648 + MGP_CASTEiJ_P0077587 Sspo protein_coding protein_coding MGP_CASTEiJ_T0010447.1 MGP_CASTEiJ_G0008635.1 mouse_genomes_project 6 12254820 12254931 + Gm25470 miRNA miRNA MGP_CASTEiJ_T0077499.1 MGP_CASTEiJ_G0029778.1 mouse_genomes_project 6 41238824 41565069 - MGP_CASTEiJ_P0077499 Tpk1 protein_coding protein_coding MGP_CASTEiJ_T0077500.1 MGP_CASTEiJ_G0029778.1 mouse_genomes_project 6 41238896 41532922 - Tpk1 protein_coding processed_transcript MGP_CASTEiJ_T0077501.1 MGP_CASTEiJ_G0029778.1 mouse_genomes_project 6 41239097 41564966 - MGP_CASTEiJ_P0077501 Tpk1 protein_coding protein_coding MGP_CASTEiJ_T0077502.1 MGP_CASTEiJ_G0029778.1 mouse_genomes_project 6 41240653 41376364 - Tpk1 protein_coding processed_transcript MGP_CASTEiJ_T0077503.1 MGP_CASTEiJ_G0029778.1 mouse_genomes_project 6 41496431 41565010 - Tpk1 protein_coding processed_transcript MGP_CASTEiJ_T0077504.1 MGP_CASTEiJ_G0029778.1 mouse_genomes_project 6 41498823 41564667 - Tpk1 protein_coding processed_transcript MGP_CASTEiJ_T0002057.1 MGP_CASTEiJ_G0001978.1 mouse_genomes_project 6 117804820 117808477 - TEC TEC MGP_CASTEiJ_T0014957.1 MGP_CASTEiJ_G0013120.1 mouse_genomes_project 6 100776764 100777230 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010476.1 MGP_CASTEiJ_G0008664.1 mouse_genomes_project 6 81955370 81955444 - Mir7232 miRNA miRNA MGP_CASTEiJ_T0077919.1 MGP_CASTEiJ_G0029871.1 mouse_genomes_project 6 53975253 54028073 + MGP_CASTEiJ_P0077919 Adcyap1r1 protein_coding protein_coding MGP_CASTEiJ_T0077920.1 MGP_CASTEiJ_G0029871.1 mouse_genomes_project 6 53975303 54030610 + MGP_CASTEiJ_P0077920 Adcyap1r1 protein_coding protein_coding MGP_CASTEiJ_T0077921.1 MGP_CASTEiJ_G0029871.1 mouse_genomes_project 6 53975332 54004506 + MGP_CASTEiJ_P0077921 Adcyap1r1 protein_coding protein_coding MGP_CASTEiJ_T0077922.1 MGP_CASTEiJ_G0029871.1 mouse_genomes_project 6 53975452 53983561 + MGP_CASTEiJ_P0077922 Adcyap1r1 protein_coding protein_coding MGP_CASTEiJ_T0077923.1 MGP_CASTEiJ_G0029871.1 mouse_genomes_project 6 53983551 54026598 + MGP_CASTEiJ_P0077923 Adcyap1r1 protein_coding protein_coding MGP_CASTEiJ_T0077924.1 MGP_CASTEiJ_G0029871.1 mouse_genomes_project 6 53983551 54026341 + MGP_CASTEiJ_P0077924 Adcyap1r1 protein_coding protein_coding MGP_CASTEiJ_T0077925.1 MGP_CASTEiJ_G0029871.1 mouse_genomes_project 6 53983551 54026341 + MGP_CASTEiJ_P0077925 Adcyap1r1 protein_coding protein_coding MGP_CASTEiJ_T0077926.1 MGP_CASTEiJ_G0029871.1 mouse_genomes_project 6 53983551 54026341 + MGP_CASTEiJ_P0077926 Adcyap1r1 protein_coding protein_coding MGP_CASTEiJ_T0077729.1 MGP_CASTEiJ_G0029827.1 mouse_genomes_project 6 48478898 48568205 - MGP_CASTEiJ_P0077729 Osbpl3 protein_coding protein_coding MGP_CASTEiJ_T0077730.1 MGP_CASTEiJ_G0029827.1 mouse_genomes_project 6 48480750 48485873 - Osbpl3 protein_coding retained_intron MGP_CASTEiJ_T0077731.1 MGP_CASTEiJ_G0029827.1 mouse_genomes_project 6 48481255 48555368 - MGP_CASTEiJ_P0077731 Osbpl3 protein_coding protein_coding MGP_CASTEiJ_T0077732.1 MGP_CASTEiJ_G0029827.1 mouse_genomes_project 6 48482370 48647165 - MGP_CASTEiJ_P0077732 Osbpl3 protein_coding protein_coding MGP_CASTEiJ_T0077733.1 MGP_CASTEiJ_G0029827.1 mouse_genomes_project 6 48482376 48555471 - MGP_CASTEiJ_P0077733 Osbpl3 protein_coding protein_coding MGP_CASTEiJ_T0077734.1 MGP_CASTEiJ_G0029827.1 mouse_genomes_project 6 48485735 48568205 - Osbpl3 protein_coding retained_intron MGP_CASTEiJ_T0077735.1 MGP_CASTEiJ_G0029827.1 mouse_genomes_project 6 48512726 48538826 - MGP_CASTEiJ_P0077735 Osbpl3 protein_coding protein_coding MGP_CASTEiJ_T0077736.1 MGP_CASTEiJ_G0029827.1 mouse_genomes_project 6 48534999 48647156 - MGP_CASTEiJ_P0077736 Osbpl3 protein_coding protein_coding MGP_CASTEiJ_T0077737.1 MGP_CASTEiJ_G0029827.1 mouse_genomes_project 6 48539687 48583811 - MGP_CASTEiJ_P0077737 Osbpl3 protein_coding protein_coding MGP_CASTEiJ_T0077738.1 MGP_CASTEiJ_G0029827.1 mouse_genomes_project 6 48598040 48647196 - Osbpl3 protein_coding processed_transcript MGP_CASTEiJ_T0077496.1 MGP_CASTEiJ_G0029777.1 mouse_genomes_project 6 41199020 41204942 - MGP_CASTEiJ_P0077496 Nobox protein_coding protein_coding MGP_CASTEiJ_T0077497.1 MGP_CASTEiJ_G0029777.1 mouse_genomes_project 6 41199046 41200483 - Nobox protein_coding processed_transcript MGP_CASTEiJ_T0077498.1 MGP_CASTEiJ_G0029777.1 mouse_genomes_project 6 41199244 41202581 - MGP_CASTEiJ_P0077498 Nobox protein_coding protein_coding MGP_CASTEiJ_T0004895.1 MGP_CASTEiJ_G0004193.1 mouse_genomes_project 6 89874408 89897391 + Gm26811 antisense antisense MGP_CASTEiJ_T0014894.1 MGP_CASTEiJ_G0013057.1 mouse_genomes_project 6 73230632 73231051 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004796.1 MGP_CASTEiJ_G0004127.1 mouse_genomes_project 6 32259988 32268128 - Gm14547 antisense antisense MGP_CASTEiJ_T0077144.1 MGP_CASTEiJ_G0029667.1 mouse_genomes_project 6 32744540 32828646 + MGP_CASTEiJ_P0077144 Nup205 protein_coding protein_coding MGP_CASTEiJ_T0077145.1 MGP_CASTEiJ_G0029667.1 mouse_genomes_project 6 32744549 32828646 + MGP_CASTEiJ_P0077145 Nup205 protein_coding protein_coding MGP_CASTEiJ_T0077146.1 MGP_CASTEiJ_G0029667.1 mouse_genomes_project 6 32744716 32817123 + MGP_CASTEiJ_P0077146 Nup205 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077147.1 MGP_CASTEiJ_G0029667.1 mouse_genomes_project 6 32744735 32776238 + Nup205 protein_coding retained_intron MGP_CASTEiJ_T0077148.1 MGP_CASTEiJ_G0029667.1 mouse_genomes_project 6 32744748 32828640 + MGP_CASTEiJ_P0077148 Nup205 protein_coding protein_coding MGP_CASTEiJ_T0077149.1 MGP_CASTEiJ_G0029667.1 mouse_genomes_project 6 32775631 32828646 + Nup205 protein_coding processed_transcript MGP_CASTEiJ_T0077150.1 MGP_CASTEiJ_G0029667.1 mouse_genomes_project 6 32800827 32819186 + Nup205 protein_coding retained_intron MGP_CASTEiJ_T0077151.1 MGP_CASTEiJ_G0029667.1 mouse_genomes_project 6 32826160 32827527 + Nup205 protein_coding retained_intron MGP_CASTEiJ_T0076705.1 MGP_CASTEiJ_G0029588.1 mouse_genomes_project 6 20841882 20843121 - MGP_CASTEiJ_P0076705 Rnf148 protein_coding protein_coding MGP_CASTEiJ_T0079089.1 MGP_CASTEiJ_G0030127.1 mouse_genomes_project 6 91224012 91265669 + MGP_CASTEiJ_P0079089 Slc41a3 protein_coding protein_coding MGP_CASTEiJ_T0079090.1 MGP_CASTEiJ_G0030127.1 mouse_genomes_project 6 91238431 91265669 + MGP_CASTEiJ_P0079090 Slc41a3 protein_coding protein_coding MGP_CASTEiJ_T0008296.1 MGP_CASTEiJ_G0006734.1 mouse_genomes_project 6 7789426 7798019 - AA545190 lincRNA lincRNA MGP_CASTEiJ_T0008297.1 MGP_CASTEiJ_G0006734.1 mouse_genomes_project 6 7789865 7797994 - AA545190 lincRNA lincRNA MGP_CASTEiJ_T0008298.1 MGP_CASTEiJ_G0006734.1 mouse_genomes_project 6 7789924 7792792 - AA545190 lincRNA lincRNA MGP_CASTEiJ_T0004789.1 MGP_CASTEiJ_G0004121.1 mouse_genomes_project 6 29896514 29900089 + Plxna4os2 antisense antisense MGP_CASTEiJ_T0014988.1 MGP_CASTEiJ_G0013151.1 mouse_genomes_project 6 114470784 114471261 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002592.1 MGP_CASTEiJ_G0002488.1 mouse_genomes_project 6 38928046 38928539 + MGP_CASTEiJ_P0002592 Trbv4 TR_V_gene TR_V_gene MGP_CASTEiJ_T0081326.1 MGP_CASTEiJ_G0030582.1 mouse_genomes_project 6 152309189 152341886 - MGP_CASTEiJ_P0081326 Amn1 protein_coding protein_coding MGP_CASTEiJ_T0081327.1 MGP_CASTEiJ_G0030582.1 mouse_genomes_project 6 152309637 152341859 - MGP_CASTEiJ_P0081327 Amn1 protein_coding protein_coding MGP_CASTEiJ_T0081328.1 MGP_CASTEiJ_G0030582.1 mouse_genomes_project 6 152325922 152341869 - Amn1 protein_coding processed_transcript MGP_CASTEiJ_T0081329.1 MGP_CASTEiJ_G0030582.1 mouse_genomes_project 6 152325963 152341861 - MGP_CASTEiJ_P0081329 Amn1 protein_coding protein_coding MGP_CASTEiJ_T0081330.1 MGP_CASTEiJ_G0030582.1 mouse_genomes_project 6 152327951 152341876 - Amn1 protein_coding retained_intron MGP_CASTEiJ_T0098634.1 MGP_CASTEiJ_G0035565.1 mouse_genomes_project 6 113698434 113698534 - n-R5s165 rRNA rRNA MGP_CASTEiJ_T0000048.1 MGP_CASTEiJ_G0000040.1 mouse_genomes_project 6 70235129 70235165 + Igkj3 IG_J_gene processed_transcript MGP_CASTEiJ_T0000049.1 MGP_CASTEiJ_G0000040.1 mouse_genomes_project 6 70235129 70235167 + MGP_CASTEiJ_P0000049 Igkj3 IG_J_gene IG_J_gene MGP_CASTEiJ_T0008567.1 MGP_CASTEiJ_G0006932.1 mouse_genomes_project 6 152354699 152373669 - 1700003I16Rik lincRNA lincRNA MGP_CASTEiJ_T0076703.1 MGP_CASTEiJ_G0029587.1 mouse_genomes_project 6 20836854 20838291 - MGP_CASTEiJ_P0076703 Rnf133 protein_coding protein_coding MGP_CASTEiJ_T0076704.1 MGP_CASTEiJ_G0029587.1 mouse_genomes_project 6 20836859 20838192 - MGP_CASTEiJ_P0076704 Rnf133 protein_coding protein_coding MGP_CASTEiJ_T0014829.1 MGP_CASTEiJ_G0012992.1 mouse_genomes_project 6 56962269 56962699 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101160.1 MGP_CASTEiJ_G0038073.1 mouse_genomes_project 6 26509357 26509488 + Gm26021 snoRNA snoRNA MGP_CASTEiJ_T0101220.1 MGP_CASTEiJ_G0038133.1 mouse_genomes_project 6 148373418 148373505 + Gm23498 snoRNA snoRNA MGP_CASTEiJ_T0001887.1 MGP_CASTEiJ_G0001808.1 mouse_genomes_project 6 37883417 37885138 + TEC TEC MGP_CASTEiJ_T0014935.1 MGP_CASTEiJ_G0013098.1 mouse_genomes_project 6 92096635 92098412 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014858.1 MGP_CASTEiJ_G0013021.1 mouse_genomes_project 6 65222925 65223490 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076405.1 MGP_CASTEiJ_G0029533.1 mouse_genomes_project 6 2268339 2281129 - MGP_CASTEiJ_P0076405 Pdk4 protein_coding protein_coding MGP_CASTEiJ_T0076406.1 MGP_CASTEiJ_G0029533.1 mouse_genomes_project 6 2269894 2281022 - MGP_CASTEiJ_P0076406 Pdk4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076407.1 MGP_CASTEiJ_G0029533.1 mouse_genomes_project 6 2276444 2281081 - MGP_CASTEiJ_P0076407 Pdk4 protein_coding protein_coding MGP_CASTEiJ_T0076408.1 MGP_CASTEiJ_G0029533.1 mouse_genomes_project 6 2279703 2281095 - Pdk4 protein_coding retained_intron MGP_CASTEiJ_T0076483.1 MGP_CASTEiJ_G0029550.1 mouse_genomes_project 6 5768779 5772798 + Nxph1 protein_coding processed_transcript MGP_CASTEiJ_T0076484.1 MGP_CASTEiJ_G0029550.1 mouse_genomes_project 6 5768962 6083850 + MGP_CASTEiJ_P0076484 Nxph1 protein_coding protein_coding MGP_CASTEiJ_T0076485.1 MGP_CASTEiJ_G0029550.1 mouse_genomes_project 6 5770024 6083848 + MGP_CASTEiJ_P0076485 Nxph1 protein_coding protein_coding MGP_CASTEiJ_T0004846.1 MGP_CASTEiJ_G0004166.1 mouse_genomes_project 6 72721294 72730363 + Gm44031 antisense antisense MGP_CASTEiJ_T0008431.1 MGP_CASTEiJ_G0006830.1 mouse_genomes_project 6 82983716 82989038 - 2310069B03Rik lincRNA lincRNA MGP_CASTEiJ_T0008432.1 MGP_CASTEiJ_G0006830.1 mouse_genomes_project 6 82984381 82989038 - 2310069B03Rik lincRNA lincRNA MGP_CASTEiJ_T0008433.1 MGP_CASTEiJ_G0006830.1 mouse_genomes_project 6 82985280 82989017 - 2310069B03Rik lincRNA lincRNA MGP_CASTEiJ_T0080448.1 MGP_CASTEiJ_G0030380.1 mouse_genomes_project 6 127522357 127540916 - MGP_CASTEiJ_P0080448 Plekhg6 protein_coding protein_coding MGP_CASTEiJ_T0077213.1 MGP_CASTEiJ_G0029684.1 mouse_genomes_project 6 36169987 36248326 + MGP_CASTEiJ_P0077213 Ubn2 protein_coding protein_coding MGP_CASTEiJ_T0077214.1 MGP_CASTEiJ_G0029684.1 mouse_genomes_project 6 36170210 36238560 + MGP_CASTEiJ_P0077214 Ubn2 protein_coding protein_coding MGP_CASTEiJ_T0077215.1 MGP_CASTEiJ_G0029684.1 mouse_genomes_project 6 36170326 36218807 + MGP_CASTEiJ_P0077215 Ubn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077216.1 MGP_CASTEiJ_G0029684.1 mouse_genomes_project 6 36176566 36263712 + MGP_CASTEiJ_P0077216 Ubn2 protein_coding protein_coding MGP_CASTEiJ_T0077217.1 MGP_CASTEiJ_G0029684.1 mouse_genomes_project 6 36198153 36198934 + Ubn2 protein_coding retained_intron MGP_CASTEiJ_T0077218.1 MGP_CASTEiJ_G0029684.1 mouse_genomes_project 6 36199092 36220814 + Ubn2 protein_coding retained_intron MGP_CASTEiJ_T0077219.1 MGP_CASTEiJ_G0029684.1 mouse_genomes_project 6 36219082 36223442 + Ubn2 protein_coding retained_intron MGP_CASTEiJ_T0077220.1 MGP_CASTEiJ_G0029684.1 mouse_genomes_project 6 36219180 36224326 + Ubn2 protein_coding processed_transcript MGP_CASTEiJ_T0077221.1 MGP_CASTEiJ_G0029684.1 mouse_genomes_project 6 36220054 36238560 + Ubn2 protein_coding retained_intron MGP_CASTEiJ_T0077222.1 MGP_CASTEiJ_G0029684.1 mouse_genomes_project 6 36226986 36263746 + MGP_CASTEiJ_P0077222 Ubn2 protein_coding protein_coding MGP_CASTEiJ_T0001977.1 MGP_CASTEiJ_G0001898.1 mouse_genomes_project 6 86415276 86417138 + TEC TEC MGP_CASTEiJ_T0077885.1 MGP_CASTEiJ_G0029863.1 mouse_genomes_project 6 53429896 53485908 - MGP_CASTEiJ_P0077885 Nod1 protein_coding protein_coding MGP_CASTEiJ_T0077886.1 MGP_CASTEiJ_G0029863.1 mouse_genomes_project 6 53429896 53484958 - MGP_CASTEiJ_P0077886 Nod1 protein_coding protein_coding MGP_CASTEiJ_T0077887.1 MGP_CASTEiJ_G0029863.1 mouse_genomes_project 6 53430739 53435674 - Nod1 protein_coding processed_transcript MGP_CASTEiJ_T0077888.1 MGP_CASTEiJ_G0029863.1 mouse_genomes_project 6 53435664 53450790 - MGP_CASTEiJ_P0077888 Nod1 protein_coding protein_coding MGP_CASTEiJ_T0077889.1 MGP_CASTEiJ_G0029863.1 mouse_genomes_project 6 53444689 53447185 - Nod1 protein_coding processed_transcript MGP_CASTEiJ_T0077890.1 MGP_CASTEiJ_G0029863.1 mouse_genomes_project 6 53456804 53478199 - MGP_CASTEiJ_P0077890 Nod1 protein_coding protein_coding MGP_CASTEiJ_T0001968.1 MGP_CASTEiJ_G0001889.1 mouse_genomes_project 6 80834257 80836920 + TEC TEC MGP_CASTEiJ_T0014844.1 MGP_CASTEiJ_G0013007.1 mouse_genomes_project 6 63390381 63390546 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004793.1 MGP_CASTEiJ_G0004125.1 mouse_genomes_project 6 31802977 31838319 + Gm14546 antisense antisense MGP_CASTEiJ_T0079450.1 MGP_CASTEiJ_G0030198.1 mouse_genomes_project 6 114528372 114551099 + MGP_CASTEiJ_P0079450 Thumpd3 protein_coding protein_coding MGP_CASTEiJ_T0079451.1 MGP_CASTEiJ_G0030198.1 mouse_genomes_project 6 114528449 114538115 + MGP_CASTEiJ_P0079451 Thumpd3 protein_coding protein_coding MGP_CASTEiJ_T0079452.1 MGP_CASTEiJ_G0030198.1 mouse_genomes_project 6 114528462 114543589 + Thumpd3 protein_coding retained_intron MGP_CASTEiJ_T0079453.1 MGP_CASTEiJ_G0030198.1 mouse_genomes_project 6 114528474 114531689 + Thumpd3 protein_coding retained_intron MGP_CASTEiJ_T0079454.1 MGP_CASTEiJ_G0030198.1 mouse_genomes_project 6 114528504 114530165 + Thumpd3 protein_coding retained_intron MGP_CASTEiJ_T0079455.1 MGP_CASTEiJ_G0030198.1 mouse_genomes_project 6 114528605 114529825 + MGP_CASTEiJ_P0079455 Thumpd3 protein_coding protein_coding MGP_CASTEiJ_T0079456.1 MGP_CASTEiJ_G0030198.1 mouse_genomes_project 6 114528902 114529851 + MGP_CASTEiJ_P0079456 Thumpd3 protein_coding protein_coding MGP_CASTEiJ_T0079457.1 MGP_CASTEiJ_G0030198.1 mouse_genomes_project 6 114529564 114533190 + Thumpd3 protein_coding processed_transcript MGP_CASTEiJ_T0079458.1 MGP_CASTEiJ_G0030198.1 mouse_genomes_project 6 114540725 114543813 + Thumpd3 protein_coding retained_intron MGP_CASTEiJ_T0079459.1 MGP_CASTEiJ_G0030198.1 mouse_genomes_project 6 114548229 114550717 + Thumpd3 protein_coding retained_intron MGP_CASTEiJ_T0080033.1 MGP_CASTEiJ_G0030296.1 mouse_genomes_project 6 122615647 122623542 - Atp6v1e1 protein_coding retained_intron MGP_CASTEiJ_T0080034.1 MGP_CASTEiJ_G0030296.1 mouse_genomes_project 6 122616576 122640547 - MGP_CASTEiJ_P0080034 Atp6v1e1 protein_coding protein_coding MGP_CASTEiJ_T0080035.1 MGP_CASTEiJ_G0030296.1 mouse_genomes_project 6 122616586 122636135 - MGP_CASTEiJ_P0080035 Atp6v1e1 protein_coding protein_coding MGP_CASTEiJ_T0080036.1 MGP_CASTEiJ_G0030296.1 mouse_genomes_project 6 122624862 122640439 - Atp6v1e1 protein_coding retained_intron MGP_CASTEiJ_T0080037.1 MGP_CASTEiJ_G0030296.1 mouse_genomes_project 6 122625200 122640446 - MGP_CASTEiJ_P0080037 Atp6v1e1 protein_coding protein_coding MGP_CASTEiJ_T0080038.1 MGP_CASTEiJ_G0030296.1 mouse_genomes_project 6 122630591 122640293 - MGP_CASTEiJ_P0080038 Atp6v1e1 protein_coding protein_coding MGP_CASTEiJ_T0081033.1 MGP_CASTEiJ_G0030534.1 mouse_genomes_project 6 145171415 145212148 - MGP_CASTEiJ_P0081033 Recql protein_coding protein_coding MGP_CASTEiJ_T0081035.1 MGP_CASTEiJ_G0030534.1 mouse_genomes_project 6 145178414 145212186 - MGP_CASTEiJ_P0081035 Recql protein_coding protein_coding MGP_CASTEiJ_T0081036.1 MGP_CASTEiJ_G0030534.1 mouse_genomes_project 6 145178418 145191156 - MGP_CASTEiJ_P0081036 Recql protein_coding protein_coding MGP_CASTEiJ_T0081037.1 MGP_CASTEiJ_G0030534.1 mouse_genomes_project 6 145179327 145185121 - Recql protein_coding processed_transcript MGP_CASTEiJ_T0081038.1 MGP_CASTEiJ_G0030534.1 mouse_genomes_project 6 145182834 145212199 - MGP_CASTEiJ_P0081038 Recql protein_coding protein_coding MGP_CASTEiJ_T0081039.1 MGP_CASTEiJ_G0030534.1 mouse_genomes_project 6 145183579 145185033 - MGP_CASTEiJ_P0081039 Recql protein_coding protein_coding MGP_CASTEiJ_T0081040.1 MGP_CASTEiJ_G0030534.1 mouse_genomes_project 6 145188950 145192931 - Recql protein_coding processed_transcript MGP_CASTEiJ_T0081041.1 MGP_CASTEiJ_G0030534.1 mouse_genomes_project 6 145191685 145192097 - Recql protein_coding retained_intron MGP_CASTEiJ_T0081042.1 MGP_CASTEiJ_G0030534.1 mouse_genomes_project 6 145199753 145212121 - MGP_CASTEiJ_P0081042 Recql protein_coding protein_coding MGP_CASTEiJ_T0081043.1 MGP_CASTEiJ_G0030534.1 mouse_genomes_project 6 145199753 145212086 - MGP_CASTEiJ_P0081043 Recql protein_coding protein_coding MGP_CASTEiJ_T0081044.1 MGP_CASTEiJ_G0030534.1 mouse_genomes_project 6 145201857 145212194 - MGP_CASTEiJ_P0081044 Recql protein_coding protein_coding MGP_CASTEiJ_T0080623.1 MGP_CASTEiJ_G0030421.1 mouse_genomes_project 6 131538121 131553623 - MGP_CASTEiJ_P0080623 Clec2e protein_coding protein_coding MGP_CASTEiJ_T0078155.1 MGP_CASTEiJ_G0029936.1 mouse_genomes_project 6 66936592 66938325 - MGP_CASTEiJ_P0078155 Tacstd2 protein_coding protein_coding MGP_CASTEiJ_T0015022.1 MGP_CASTEiJ_G0013185.1 mouse_genomes_project 6 124463976 124464737 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080008.1 MGP_CASTEiJ_G0030290.1 mouse_genomes_project 6 122135457 122199479 + MGP_CASTEiJ_P0080008 Kdm5a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080009.1 MGP_CASTEiJ_G0030290.1 mouse_genomes_project 6 122135457 122225477 + MGP_CASTEiJ_P0080009 Kdm5a protein_coding protein_coding MGP_CASTEiJ_T0080010.1 MGP_CASTEiJ_G0030290.1 mouse_genomes_project 6 122135465 122141180 + Kdm5a protein_coding retained_intron MGP_CASTEiJ_T0080011.1 MGP_CASTEiJ_G0030290.1 mouse_genomes_project 6 122135791 122199452 + MGP_CASTEiJ_P0080011 Kdm5a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080012.1 MGP_CASTEiJ_G0030290.1 mouse_genomes_project 6 122146598 122159622 + MGP_CASTEiJ_P0080012 Kdm5a protein_coding protein_coding MGP_CASTEiJ_T0080013.1 MGP_CASTEiJ_G0030290.1 mouse_genomes_project 6 122178008 122193850 + Kdm5a protein_coding retained_intron MGP_CASTEiJ_T0080014.1 MGP_CASTEiJ_G0030290.1 mouse_genomes_project 6 122203068 122205949 + Kdm5a protein_coding retained_intron MGP_CASTEiJ_T0080015.1 MGP_CASTEiJ_G0030290.1 mouse_genomes_project 6 122205870 122220620 + Kdm5a protein_coding processed_transcript MGP_CASTEiJ_T0015049.1 MGP_CASTEiJ_G0013212.1 mouse_genomes_project 6 130942992 130943398 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076619.1 MGP_CASTEiJ_G0029571.1 mouse_genomes_project 6 14935524 14976902 - MGP_CASTEiJ_P0076619 Wnt2 protein_coding protein_coding MGP_CASTEiJ_T0008370.1 MGP_CASTEiJ_G0006781.1 mouse_genomes_project 6 46643878 46644776 - 1700026J14Rik lincRNA lincRNA MGP_CASTEiJ_T0001845.1 MGP_CASTEiJ_G0001766.1 mouse_genomes_project 6 1518697 1520561 + TEC TEC MGP_CASTEiJ_T0000280.1 MGP_CASTEiJ_G0000229.1 mouse_genomes_project 6 68346498 68346906 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0077262.1 MGP_CASTEiJ_G0029693.1 mouse_genomes_project 6 37128776 37173414 - MGP_CASTEiJ_P0077262 Slc37a3 protein_coding protein_coding MGP_CASTEiJ_T0077263.1 MGP_CASTEiJ_G0029693.1 mouse_genomes_project 6 37129988 37173411 - MGP_CASTEiJ_P0077263 Slc37a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077264.1 MGP_CASTEiJ_G0029693.1 mouse_genomes_project 6 37129989 37141729 - Slc37a3 protein_coding processed_transcript MGP_CASTEiJ_T0077265.1 MGP_CASTEiJ_G0029693.1 mouse_genomes_project 6 37129992 37168675 - MGP_CASTEiJ_P0077265 Slc37a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077266.1 MGP_CASTEiJ_G0029693.1 mouse_genomes_project 6 37130609 37141149 - Slc37a3 protein_coding processed_transcript MGP_CASTEiJ_T0077267.1 MGP_CASTEiJ_G0029693.1 mouse_genomes_project 6 37137655 37141121 - Slc37a3 protein_coding retained_intron MGP_CASTEiJ_T0077268.1 MGP_CASTEiJ_G0029693.1 mouse_genomes_project 6 37148679 37173398 - MGP_CASTEiJ_P0077268 Slc37a3 protein_coding protein_coding MGP_CASTEiJ_T0077269.1 MGP_CASTEiJ_G0029693.1 mouse_genomes_project 6 37151198 37173411 - MGP_CASTEiJ_P0077269 Slc37a3 protein_coding protein_coding MGP_CASTEiJ_T0077270.1 MGP_CASTEiJ_G0029693.1 mouse_genomes_project 6 37153063 37173386 - MGP_CASTEiJ_P0077270 Slc37a3 protein_coding protein_coding MGP_CASTEiJ_T0077271.1 MGP_CASTEiJ_G0029693.1 mouse_genomes_project 6 37153088 37173375 - MGP_CASTEiJ_P0077271 Slc37a3 protein_coding protein_coding MGP_CASTEiJ_T0077272.1 MGP_CASTEiJ_G0029693.1 mouse_genomes_project 6 37153090 37173401 - MGP_CASTEiJ_P0077272 Slc37a3 protein_coding protein_coding MGP_CASTEiJ_T0077273.1 MGP_CASTEiJ_G0029693.1 mouse_genomes_project 6 37159730 37173396 - MGP_CASTEiJ_P0077273 Slc37a3 protein_coding protein_coding MGP_CASTEiJ_T0077274.1 MGP_CASTEiJ_G0029693.1 mouse_genomes_project 6 37162575 37173378 - Slc37a3 protein_coding processed_transcript MGP_CASTEiJ_T0077275.1 MGP_CASTEiJ_G0029693.1 mouse_genomes_project 6 37162584 37173357 - Slc37a3 protein_coding processed_transcript MGP_CASTEiJ_T0008551.1 MGP_CASTEiJ_G0006920.1 mouse_genomes_project 6 149047772 149050078 - Gm44269 lincRNA lincRNA MGP_CASTEiJ_T0101189.1 MGP_CASTEiJ_G0038102.1 mouse_genomes_project 6 91483815 91483911 + Gm25185 snoRNA snoRNA MGP_CASTEiJ_T0001947.1 MGP_CASTEiJ_G0001868.1 mouse_genomes_project 6 72426087 72428862 - TEC TEC MGP_CASTEiJ_T0077208.1 MGP_CASTEiJ_G0029683.1 mouse_genomes_project 6 36108215 36163660 + MGP_CASTEiJ_P0077208 Ttc26 protein_coding protein_coding MGP_CASTEiJ_T0077209.1 MGP_CASTEiJ_G0029683.1 mouse_genomes_project 6 36108271 36163660 + MGP_CASTEiJ_P0077209 Ttc26 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077210.1 MGP_CASTEiJ_G0029683.1 mouse_genomes_project 6 36108271 36124442 + MGP_CASTEiJ_P0077210 Ttc26 protein_coding protein_coding MGP_CASTEiJ_T0077211.1 MGP_CASTEiJ_G0029683.1 mouse_genomes_project 6 36108275 36127659 + MGP_CASTEiJ_P0077211 Ttc26 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077212.1 MGP_CASTEiJ_G0029683.1 mouse_genomes_project 6 36120750 36124780 + Ttc26 protein_coding retained_intron MGP_CASTEiJ_T0077108.1 MGP_CASTEiJ_G0029661.1 mouse_genomes_project 6 32402509 32410981 + Tmem140 protein_coding processed_transcript MGP_CASTEiJ_T0077109.1 MGP_CASTEiJ_G0029661.1 mouse_genomes_project 6 32402509 32414333 + MGP_CASTEiJ_P0077109 Tmem140 protein_coding protein_coding MGP_CASTEiJ_T0077110.1 MGP_CASTEiJ_G0029661.1 mouse_genomes_project 6 32402625 32412002 + MGP_CASTEiJ_P0077110 Tmem140 protein_coding protein_coding MGP_CASTEiJ_T0077111.1 MGP_CASTEiJ_G0029661.1 mouse_genomes_project 6 32406463 32408227 + Tmem140 protein_coding processed_transcript MGP_CASTEiJ_T0077112.1 MGP_CASTEiJ_G0029661.1 mouse_genomes_project 6 32406495 32412127 + MGP_CASTEiJ_P0077112 Tmem140 protein_coding protein_coding MGP_CASTEiJ_T0077115.1 MGP_CASTEiJ_G0029661.1 mouse_genomes_project 6 32412102 32412945 + Tmem140 protein_coding processed_transcript MGP_CASTEiJ_T0015043.1 MGP_CASTEiJ_G0013206.1 mouse_genomes_project 6 129631099 129631632 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078672.1 MGP_CASTEiJ_G0030040.1 mouse_genomes_project 6 85719501 85724383 + MGP_CASTEiJ_P0078672 Noto protein_coding protein_coding MGP_CASTEiJ_T0078673.1 MGP_CASTEiJ_G0030040.1 mouse_genomes_project 6 85719683 85723787 + MGP_CASTEiJ_P0078673 Noto protein_coding protein_coding MGP_CASTEiJ_T0081342.1 MGP_CASTEiJ_G0030584.1 mouse_genomes_project 6 152589394 152602534 + Bicd1 protein_coding retained_intron MGP_CASTEiJ_T0081343.1 MGP_CASTEiJ_G0030584.1 mouse_genomes_project 6 152589492 152764827 + MGP_CASTEiJ_P0081343 Bicd1 protein_coding protein_coding MGP_CASTEiJ_T0081344.1 MGP_CASTEiJ_G0030584.1 mouse_genomes_project 6 152589524 152755358 + MGP_CASTEiJ_P0081344 Bicd1 protein_coding protein_coding MGP_CASTEiJ_T0081345.1 MGP_CASTEiJ_G0030584.1 mouse_genomes_project 6 152589577 152688897 + Bicd1 protein_coding retained_intron MGP_CASTEiJ_T0081346.1 MGP_CASTEiJ_G0030584.1 mouse_genomes_project 6 152589934 152754271 + MGP_CASTEiJ_P0081346 Bicd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081347.1 MGP_CASTEiJ_G0030584.1 mouse_genomes_project 6 152589934 152754271 + MGP_CASTEiJ_P0081347 Bicd1 protein_coding protein_coding MGP_CASTEiJ_T0081348.1 MGP_CASTEiJ_G0030584.1 mouse_genomes_project 6 152700907 152706346 + Bicd1 protein_coding retained_intron MGP_CASTEiJ_T0081349.1 MGP_CASTEiJ_G0030584.1 mouse_genomes_project 6 152703943 152712132 + MGP_CASTEiJ_P0081349 Bicd1 protein_coding protein_coding MGP_CASTEiJ_T0081350.1 MGP_CASTEiJ_G0030584.1 mouse_genomes_project 6 152741201 152756401 + Bicd1 protein_coding retained_intron MGP_CASTEiJ_T0080139.1 MGP_CASTEiJ_G0030316.1 mouse_genomes_project 6 124477084 124502223 - MGP_CASTEiJ_P0080139 Apobec1 protein_coding protein_coding MGP_CASTEiJ_T0080140.1 MGP_CASTEiJ_G0030316.1 mouse_genomes_project 6 124477091 124499903 - MGP_CASTEiJ_P0080140 Apobec1 protein_coding protein_coding MGP_CASTEiJ_T0080141.1 MGP_CASTEiJ_G0030316.1 mouse_genomes_project 6 124477093 124502149 - MGP_CASTEiJ_P0080141 Apobec1 protein_coding protein_coding MGP_CASTEiJ_T0080142.1 MGP_CASTEiJ_G0030316.1 mouse_genomes_project 6 124481486 124502165 - MGP_CASTEiJ_P0080142 Apobec1 protein_coding protein_coding MGP_CASTEiJ_T0080143.1 MGP_CASTEiJ_G0030316.1 mouse_genomes_project 6 124481512 124500134 - MGP_CASTEiJ_P0080143 Apobec1 protein_coding protein_coding MGP_CASTEiJ_T0080144.1 MGP_CASTEiJ_G0030316.1 mouse_genomes_project 6 124481694 124502106 - MGP_CASTEiJ_P0080144 Apobec1 protein_coding protein_coding MGP_CASTEiJ_T0080145.1 MGP_CASTEiJ_G0030316.1 mouse_genomes_project 6 124487014 124502148 - MGP_CASTEiJ_P0080145 Apobec1 protein_coding protein_coding MGP_CASTEiJ_T0080146.1 MGP_CASTEiJ_G0030316.1 mouse_genomes_project 6 124487759 124502142 - Apobec1 protein_coding retained_intron MGP_CASTEiJ_T0080147.1 MGP_CASTEiJ_G0030316.1 mouse_genomes_project 6 124496357 124500214 - Apobec1 protein_coding retained_intron MGP_CASTEiJ_T0004948.1 MGP_CASTEiJ_G0004232.1 mouse_genomes_project 6 128943645 128968689 + Gm26673 antisense antisense MGP_CASTEiJ_T0077398.1 MGP_CASTEiJ_G0029739.1 mouse_genomes_project 6 39887214 39892195 + MGP_CASTEiJ_P0077398 Sval3 protein_coding protein_coding MGP_CASTEiJ_T0001894.1 MGP_CASTEiJ_G0001815.1 mouse_genomes_project 6 43036868 43040677 + TEC TEC MGP_CASTEiJ_T0102404.1 MGP_CASTEiJ_G0039129.1 mouse_genomes_project 6 66160227 66167035 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015090.1 MGP_CASTEiJ_G0013253.1 mouse_genomes_project 6 144954605 144955675 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004962.1 MGP_CASTEiJ_G0004244.1 mouse_genomes_project 6 136528645 136539180 - Gm17089 antisense antisense MGP_CASTEiJ_T0077339.1 MGP_CASTEiJ_G0029708.1 mouse_genomes_project 6 38372117 38373130 + MGP_CASTEiJ_P0077339 Tas2r108 protein_coding protein_coding MGP_CASTEiJ_T0000287.1 MGP_CASTEiJ_G0000236.1 mouse_genomes_project 6 68983719 68984236 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0014967.1 MGP_CASTEiJ_G0013130.1 mouse_genomes_project 6 104442952 104443388 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077534.1 MGP_CASTEiJ_G0029782.1 mouse_genomes_project 6 45854391 45873352 - MGP_CASTEiJ_P0077534 Pdia4 protein_coding protein_coding MGP_CASTEiJ_T0077535.1 MGP_CASTEiJ_G0029782.1 mouse_genomes_project 6 45867037 45873286 - Pdia4 protein_coding processed_transcript MGP_CASTEiJ_T0002489.1 MGP_CASTEiJ_G0002399.1 mouse_genomes_project 6 39369051 39369101 + MGP_CASTEiJ_P0002489 Trbj1-5 TR_J_gene TR_J_gene MGP_CASTEiJ_T0011343.1 MGP_CASTEiJ_G0009531.1 mouse_genomes_project 6 145052183 145052472 - Gm25430 misc_RNA misc_RNA MGP_CASTEiJ_T0098630.1 MGP_CASTEiJ_G0035561.1 mouse_genomes_project 6 87737437 87737549 + n-R5s164 rRNA rRNA MGP_CASTEiJ_T0004849.1 MGP_CASTEiJ_G0004169.1 mouse_genomes_project 6 82854159 82857178 + Gm17034 antisense antisense MGP_CASTEiJ_T0076969.1 MGP_CASTEiJ_G0029639.1 mouse_genomes_project 6 28004201 28025667 + MGP_CASTEiJ_P0076969 Cpa5 protein_coding protein_coding MGP_CASTEiJ_T0076970.1 MGP_CASTEiJ_G0029639.1 mouse_genomes_project 6 28004242 28024641 + MGP_CASTEiJ_P0076970 Cpa5 protein_coding protein_coding MGP_CASTEiJ_T0076971.1 MGP_CASTEiJ_G0029639.1 mouse_genomes_project 6 28005383 28025665 + MGP_CASTEiJ_P0076971 Cpa5 protein_coding protein_coding MGP_CASTEiJ_T0076972.1 MGP_CASTEiJ_G0029639.1 mouse_genomes_project 6 28005750 28024557 + MGP_CASTEiJ_P0076972 Cpa5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080987.1 MGP_CASTEiJ_G0030521.1 mouse_genomes_project 6 143390553 143448126 + MGP_CASTEiJ_P0080987 Aebp2 protein_coding protein_coding MGP_CASTEiJ_T0080988.1 MGP_CASTEiJ_G0030521.1 mouse_genomes_project 6 143390559 143426542 + MGP_CASTEiJ_P0080988 Aebp2 protein_coding protein_coding MGP_CASTEiJ_T0080989.1 MGP_CASTEiJ_G0030521.1 mouse_genomes_project 6 143391162 143447027 + MGP_CASTEiJ_P0080989 Aebp2 protein_coding protein_coding MGP_CASTEiJ_T0080990.1 MGP_CASTEiJ_G0030521.1 mouse_genomes_project 6 143391775 143424488 + MGP_CASTEiJ_P0080990 Aebp2 protein_coding protein_coding MGP_CASTEiJ_T0080991.1 MGP_CASTEiJ_G0030521.1 mouse_genomes_project 6 143393769 143425571 + MGP_CASTEiJ_P0080991 Aebp2 protein_coding protein_coding MGP_CASTEiJ_T0080992.1 MGP_CASTEiJ_G0030521.1 mouse_genomes_project 6 143405197 143407746 + Aebp2 protein_coding retained_intron MGP_CASTEiJ_T0080993.1 MGP_CASTEiJ_G0030521.1 mouse_genomes_project 6 143407330 143427167 + MGP_CASTEiJ_P0080993 Aebp2 protein_coding protein_coding MGP_CASTEiJ_T0080994.1 MGP_CASTEiJ_G0030521.1 mouse_genomes_project 6 143413034 143424774 + Aebp2 protein_coding processed_transcript MGP_CASTEiJ_T0080995.1 MGP_CASTEiJ_G0030521.1 mouse_genomes_project 6 143419555 143421128 + Aebp2 protein_coding processed_transcript MGP_CASTEiJ_T0079595.1 MGP_CASTEiJ_G0030221.1 mouse_genomes_project 6 115176298 115237443 + MGP_CASTEiJ_P0079595 Irak2 protein_coding protein_coding MGP_CASTEiJ_T0079596.1 MGP_CASTEiJ_G0030221.1 mouse_genomes_project 6 115176319 115236396 + MGP_CASTEiJ_P0079596 Irak2 protein_coding protein_coding MGP_CASTEiJ_T0079597.1 MGP_CASTEiJ_G0030221.1 mouse_genomes_project 6 115176332 115206055 + Irak2 protein_coding retained_intron MGP_CASTEiJ_T0079598.1 MGP_CASTEiJ_G0030221.1 mouse_genomes_project 6 115176359 115237426 + MGP_CASTEiJ_P0079598 Irak2 protein_coding protein_coding MGP_CASTEiJ_T0079599.1 MGP_CASTEiJ_G0030221.1 mouse_genomes_project 6 115176367 115213142 + MGP_CASTEiJ_P0079599 Irak2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079600.1 MGP_CASTEiJ_G0030221.1 mouse_genomes_project 6 115208951 115213048 + Irak2 protein_coding processed_transcript MGP_CASTEiJ_T0079601.1 MGP_CASTEiJ_G0030221.1 mouse_genomes_project 6 115209908 115236396 + Irak2 protein_coding retained_intron MGP_CASTEiJ_T0079602.1 MGP_CASTEiJ_G0030221.1 mouse_genomes_project 6 115233366 115236511 + Irak2 protein_coding retained_intron MGP_CASTEiJ_T0079603.1 MGP_CASTEiJ_G0030221.1 mouse_genomes_project 6 115235343 115236608 + Irak2 protein_coding processed_transcript MGP_CASTEiJ_T0102444.1 MGP_CASTEiJ_G0039169.1 mouse_genomes_project 6 135880532 135882553 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0077882.1 MGP_CASTEiJ_G0029862.1 mouse_genomes_project 6 53312782 53394302 + MGP_CASTEiJ_P0077882 Znrf2 protein_coding protein_coding MGP_CASTEiJ_T0077883.1 MGP_CASTEiJ_G0029862.1 mouse_genomes_project 6 53313136 53377672 + MGP_CASTEiJ_P0077883 Znrf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077884.1 MGP_CASTEiJ_G0029862.1 mouse_genomes_project 6 53313314 53385925 + MGP_CASTEiJ_P0077884 Znrf2 protein_coding protein_coding MGP_CASTEiJ_T0076447.1 MGP_CASTEiJ_G0029543.1 mouse_genomes_project 6 4785330 4993456 - MGP_CASTEiJ_P0076447 Col28a1 protein_coding protein_coding MGP_CASTEiJ_T0076448.1 MGP_CASTEiJ_G0029543.1 mouse_genomes_project 6 4785999 4975182 - MGP_CASTEiJ_P0076448 Col28a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076449.1 MGP_CASTEiJ_G0029543.1 mouse_genomes_project 6 4807966 4809444 - Col28a1 protein_coding processed_transcript MGP_CASTEiJ_T0076450.1 MGP_CASTEiJ_G0029543.1 mouse_genomes_project 6 4865236 4870094 - Col28a1 protein_coding retained_intron MGP_CASTEiJ_T0080048.1 MGP_CASTEiJ_G0030299.1 mouse_genomes_project 6 122762509 122831415 - Mical3 protein_coding processed_transcript MGP_CASTEiJ_T0080049.1 MGP_CASTEiJ_G0030299.1 mouse_genomes_project 6 122765583 122789661 - Mical3 protein_coding processed_transcript MGP_CASTEiJ_T0080050.1 MGP_CASTEiJ_G0030299.1 mouse_genomes_project 6 122765627 122766336 - Mical3 protein_coding retained_intron MGP_CASTEiJ_T0080051.1 MGP_CASTEiJ_G0030299.1 mouse_genomes_project 6 122781500 122788749 - Mical3 protein_coding processed_transcript MGP_CASTEiJ_T0080052.1 MGP_CASTEiJ_G0030299.1 mouse_genomes_project 6 122789368 122831415 - Mical3 protein_coding processed_transcript MGP_CASTEiJ_T0080053.1 MGP_CASTEiJ_G0030299.1 mouse_genomes_project 6 122791037 122797094 - Mical3 protein_coding processed_transcript MGP_CASTEiJ_T0080054.1 MGP_CASTEiJ_G0030299.1 mouse_genomes_project 6 122825085 122852842 - MGP_CASTEiJ_P0080054 Mical3 protein_coding protein_coding MGP_CASTEiJ_T0080055.1 MGP_CASTEiJ_G0030299.1 mouse_genomes_project 6 122835506 122912153 - MGP_CASTEiJ_P0080055 Mical3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080056.1 MGP_CASTEiJ_G0030299.1 mouse_genomes_project 6 122835506 122912155 - MGP_CASTEiJ_P0080056 Mical3 protein_coding protein_coding MGP_CASTEiJ_T0080057.1 MGP_CASTEiJ_G0030299.1 mouse_genomes_project 6 122835507 122852857 - MGP_CASTEiJ_P0080057 Mical3 protein_coding protein_coding MGP_CASTEiJ_T0080058.1 MGP_CASTEiJ_G0030299.1 mouse_genomes_project 6 122845690 122852879 - Mical3 protein_coding processed_transcript MGP_CASTEiJ_T0080059.1 MGP_CASTEiJ_G0030299.1 mouse_genomes_project 6 122845690 122942794 - Mical3 protein_coding retained_intron MGP_CASTEiJ_T0080060.1 MGP_CASTEiJ_G0030299.1 mouse_genomes_project 6 122852800 122973605 - MGP_CASTEiJ_P0080060 Mical3 protein_coding protein_coding MGP_CASTEiJ_T0080061.1 MGP_CASTEiJ_G0030299.1 mouse_genomes_project 6 122852979 122856336 - Mical3 protein_coding retained_intron MGP_CASTEiJ_T0080062.1 MGP_CASTEiJ_G0030299.1 mouse_genomes_project 6 122855322 122855982 - Mical3 protein_coding processed_transcript MGP_CASTEiJ_T0080063.1 MGP_CASTEiJ_G0030299.1 mouse_genomes_project 6 122859513 122861336 - Mical3 protein_coding retained_intron MGP_CASTEiJ_T0077197.1 MGP_CASTEiJ_G0029680.1 mouse_genomes_project 6 35835281 35973118 - MGP_CASTEiJ_P0077197 D630045J12Rik protein_coding protein_coding MGP_CASTEiJ_T0077198.1 MGP_CASTEiJ_G0029680.1 mouse_genomes_project 6 35838125 35862478 - D630045J12Rik protein_coding retained_intron MGP_CASTEiJ_T0077199.1 MGP_CASTEiJ_G0029680.1 mouse_genomes_project 6 35838131 35862421 - D630045J12Rik protein_coding retained_intron MGP_CASTEiJ_T0077200.1 MGP_CASTEiJ_G0029680.1 mouse_genomes_project 6 35851424 35914571 - D630045J12Rik protein_coding retained_intron MGP_CASTEiJ_T0077201.1 MGP_CASTEiJ_G0029680.1 mouse_genomes_project 6 35875004 35886271 - D630045J12Rik protein_coding retained_intron MGP_CASTEiJ_T0015078.1 MGP_CASTEiJ_G0013241.1 mouse_genomes_project 6 138980304 138980697 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001903.1 MGP_CASTEiJ_G0001824.1 mouse_genomes_project 6 43381908 43383864 + TEC TEC MGP_CASTEiJ_T0077878.1 MGP_CASTEiJ_G0029860.1 mouse_genomes_project 6 53081011 53133791 + MGP_CASTEiJ_P0077878 Plekha8 protein_coding protein_coding MGP_CASTEiJ_T0080732.1 MGP_CASTEiJ_G0030469.1 mouse_genomes_project 6 135400532 135401534 - MGP_CASTEiJ_P0080732 Tas2r123 protein_coding protein_coding MGP_CASTEiJ_T0000051.1 MGP_CASTEiJ_G0000042.1 mouse_genomes_project 6 70235792 70235834 + Igkj5 IG_J_gene processed_transcript MGP_CASTEiJ_T0000052.1 MGP_CASTEiJ_G0000042.1 mouse_genomes_project 6 70235792 70235830 + MGP_CASTEiJ_P0000052 Igkj5 IG_J_gene IG_J_gene MGP_CASTEiJ_T0000050.1 MGP_CASTEiJ_G0000041.1 mouse_genomes_project 6 70235454 70235492 + MGP_CASTEiJ_P0000050 Igkj4 IG_J_gene IG_J_gene MGP_CASTEiJ_T0079616.1 MGP_CASTEiJ_G0030224.1 mouse_genomes_project 6 115273414 115286169 - MGP_CASTEiJ_P0079616 Sec13 protein_coding protein_coding MGP_CASTEiJ_T0079617.1 MGP_CASTEiJ_G0030224.1 mouse_genomes_project 6 115275800 115280470 - Sec13 protein_coding retained_intron MGP_CASTEiJ_T0079618.1 MGP_CASTEiJ_G0030224.1 mouse_genomes_project 6 115275966 115280470 - Sec13 protein_coding retained_intron MGP_CASTEiJ_T0079619.1 MGP_CASTEiJ_G0030224.1 mouse_genomes_project 6 115284556 115286153 - Sec13 protein_coding retained_intron MGP_CASTEiJ_T0080258.1 MGP_CASTEiJ_G0030346.1 mouse_genomes_project 6 126842035 126858847 - MGP_CASTEiJ_P0080258 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0004801.1 MGP_CASTEiJ_G0004132.1 mouse_genomes_project 6 37222227 37223243 + Gm10244 antisense antisense MGP_CASTEiJ_T0004802.1 MGP_CASTEiJ_G0004132.1 mouse_genomes_project 6 37222718 37223635 + Gm10244 antisense antisense MGP_CASTEiJ_T0076753.1 MGP_CASTEiJ_G0029604.1 mouse_genomes_project 6 25471138 25494153 - MGP_CASTEiJ_P0076753 Zfp800 protein_coding protein_coding MGP_CASTEiJ_T0076754.1 MGP_CASTEiJ_G0029604.1 mouse_genomes_project 6 25471451 25641402 - MGP_CASTEiJ_P0076754 Zfp800 protein_coding protein_coding MGP_CASTEiJ_T0076755.1 MGP_CASTEiJ_G0029604.1 mouse_genomes_project 6 25472363 25494165 - MGP_CASTEiJ_P0076755 Zfp800 protein_coding protein_coding MGP_CASTEiJ_T0076756.1 MGP_CASTEiJ_G0029604.1 mouse_genomes_project 6 25473875 25493259 - MGP_CASTEiJ_P0076756 Zfp800 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076757.1 MGP_CASTEiJ_G0029604.1 mouse_genomes_project 6 25474460 25494156 - MGP_CASTEiJ_P0076757 Zfp800 protein_coding protein_coding MGP_CASTEiJ_T0076758.1 MGP_CASTEiJ_G0029604.1 mouse_genomes_project 6 25475387 25494174 - MGP_CASTEiJ_P0076758 Zfp800 protein_coding protein_coding MGP_CASTEiJ_T0008367.1 MGP_CASTEiJ_G0006778.1 mouse_genomes_project 6 45713825 45718848 + Gm26625 lincRNA lincRNA MGP_CASTEiJ_T0002497.1 MGP_CASTEiJ_G0002406.1 mouse_genomes_project 6 39377316 39377365 + MGP_CASTEiJ_P0002497 Trbj2-5 TR_J_gene TR_J_gene MGP_CASTEiJ_T0002042.1 MGP_CASTEiJ_G0001963.1 mouse_genomes_project 6 104747522 104749997 + TEC TEC MGP_CASTEiJ_T0077916.1 MGP_CASTEiJ_G0029870.1 mouse_genomes_project 6 53890160 53896702 + Ghrhr protein_coding retained_intron MGP_CASTEiJ_T0077917.1 MGP_CASTEiJ_G0029870.1 mouse_genomes_project 6 53890208 53907178 + MGP_CASTEiJ_P0077917 Ghrhr protein_coding protein_coding MGP_CASTEiJ_T0077918.1 MGP_CASTEiJ_G0029870.1 mouse_genomes_project 6 53890230 53906967 + MGP_CASTEiJ_P0077918 Ghrhr protein_coding protein_coding MGP_CASTEiJ_T0002597.1 MGP_CASTEiJ_G0002492.1 mouse_genomes_project 6 38989528 38990088 + MGP_CASTEiJ_P0002597 Trbv12-2 TR_V_gene TR_V_gene MGP_CASTEiJ_T0079055.1 MGP_CASTEiJ_G0030116.1 mouse_genomes_project 6 90676442 90677964 - MGP_CASTEiJ_P0079055 protein_coding protein_coding MGP_CASTEiJ_T0001855.1 MGP_CASTEiJ_G0001776.1 mouse_genomes_project 6 9698767 9699710 + TEC TEC MGP_CASTEiJ_T0081228.1 MGP_CASTEiJ_G0030565.1 mouse_genomes_project 6 149886351 149908854 + MGP_CASTEiJ_P0081228 Smco2 protein_coding protein_coding MGP_CASTEiJ_T0081229.1 MGP_CASTEiJ_G0030565.1 mouse_genomes_project 6 149886404 149892371 + Smco2 protein_coding retained_intron MGP_CASTEiJ_T0081230.1 MGP_CASTEiJ_G0030565.1 mouse_genomes_project 6 149893038 149900069 + Smco2 protein_coding processed_transcript MGP_CASTEiJ_T0008406.1 MGP_CASTEiJ_G0006809.1 mouse_genomes_project 6 60267458 60268028 - lincRNA lincRNA MGP_CASTEiJ_T0015093.1 MGP_CASTEiJ_G0013256.1 mouse_genomes_project 6 146011720 146011923 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001948.1 MGP_CASTEiJ_G0001869.1 mouse_genomes_project 6 72586587 72587543 - TEC TEC MGP_CASTEiJ_T0001981.1 MGP_CASTEiJ_G0001902.1 mouse_genomes_project 6 87010680 87014376 + TEC TEC MGP_CASTEiJ_T0078978.1 MGP_CASTEiJ_G0030102.1 mouse_genomes_project 6 89376679 89382664 - MGP_CASTEiJ_P0078978 Abtb1 protein_coding protein_coding MGP_CASTEiJ_T0078979.1 MGP_CASTEiJ_G0030102.1 mouse_genomes_project 6 89376689 89382658 - MGP_CASTEiJ_P0078979 Abtb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078980.1 MGP_CASTEiJ_G0030102.1 mouse_genomes_project 6 89376913 89382748 - MGP_CASTEiJ_P0078980 Abtb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078981.1 MGP_CASTEiJ_G0030102.1 mouse_genomes_project 6 89377043 89379483 - Abtb1 protein_coding retained_intron MGP_CASTEiJ_T0078982.1 MGP_CASTEiJ_G0030102.1 mouse_genomes_project 6 89377188 89379633 - MGP_CASTEiJ_P0078982 Abtb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078983.1 MGP_CASTEiJ_G0030102.1 mouse_genomes_project 6 89377450 89379847 - MGP_CASTEiJ_P0078983 Abtb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078984.1 MGP_CASTEiJ_G0030102.1 mouse_genomes_project 6 89378882 89379919 - MGP_CASTEiJ_P0078984 Abtb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078985.1 MGP_CASTEiJ_G0030102.1 mouse_genomes_project 6 89379221 89382630 - MGP_CASTEiJ_P0078985 Abtb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078986.1 MGP_CASTEiJ_G0030102.1 mouse_genomes_project 6 89379424 89380353 - Abtb1 protein_coding retained_intron MGP_CASTEiJ_T0078987.1 MGP_CASTEiJ_G0030102.1 mouse_genomes_project 6 89379611 89382646 - MGP_CASTEiJ_P0078987 Abtb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078988.1 MGP_CASTEiJ_G0030102.1 mouse_genomes_project 6 89379784 89382594 - Abtb1 protein_coding retained_intron MGP_CASTEiJ_T0078989.1 MGP_CASTEiJ_G0030102.1 mouse_genomes_project 6 89380428 89382699 - MGP_CASTEiJ_P0078989 Abtb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0014760.1 MGP_CASTEiJ_G0012923.1 mouse_genomes_project 6 28120200 28120431 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102395.1 MGP_CASTEiJ_G0039120.1 mouse_genomes_project 6 56637411 56638320 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0080074.1 MGP_CASTEiJ_G0030303.1 mouse_genomes_project 6 123159661 123198767 + MGP_CASTEiJ_P0080074 Slc6a13 protein_coding protein_coding MGP_CASTEiJ_T0080075.1 MGP_CASTEiJ_G0030303.1 mouse_genomes_project 6 123159723 123162720 + Slc6a13 protein_coding retained_intron MGP_CASTEiJ_T0080076.1 MGP_CASTEiJ_G0030303.1 mouse_genomes_project 6 123159723 123194599 + Slc6a13 protein_coding retained_intron MGP_CASTEiJ_T0080077.1 MGP_CASTEiJ_G0030303.1 mouse_genomes_project 6 123160217 123185338 + MGP_CASTEiJ_P0080077 Slc6a13 protein_coding protein_coding MGP_CASTEiJ_T0102396.1 MGP_CASTEiJ_G0039121.1 mouse_genomes_project 6 56667577 56667879 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0077960.1 MGP_CASTEiJ_G0029879.1 mouse_genomes_project 6 55387212 55437283 + MGP_CASTEiJ_P0077960 Fkbp9 protein_coding protein_coding MGP_CASTEiJ_T0077961.1 MGP_CASTEiJ_G0029879.1 mouse_genomes_project 6 55403562 55404890 + Fkbp9 protein_coding retained_intron MGP_CASTEiJ_T0076882.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27100617 27101334 + MGP_CASTEiJ_P0076882 Ahcyl2 protein_coding protein_coding MGP_CASTEiJ_T0076883.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27101049 27204886 + Ahcyl2 protein_coding retained_intron MGP_CASTEiJ_T0076884.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27101098 27251549 + MGP_CASTEiJ_P0076884 Ahcyl2 protein_coding protein_coding MGP_CASTEiJ_T0076885.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27101104 27103253 + Ahcyl2 protein_coding retained_intron MGP_CASTEiJ_T0076886.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27101134 27207946 + MGP_CASTEiJ_P0076886 Ahcyl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076887.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27101144 27251555 + MGP_CASTEiJ_P0076887 Ahcyl2 protein_coding protein_coding MGP_CASTEiJ_T0076888.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27134164 27221428 + MGP_CASTEiJ_P0076888 Ahcyl2 protein_coding protein_coding MGP_CASTEiJ_T0076889.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27191239 27248453 + MGP_CASTEiJ_P0076889 Ahcyl2 protein_coding protein_coding MGP_CASTEiJ_T0076890.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27191246 27200703 + MGP_CASTEiJ_P0076890 Ahcyl2 protein_coding protein_coding MGP_CASTEiJ_T0076891.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27191248 27207958 + MGP_CASTEiJ_P0076891 Ahcyl2 protein_coding protein_coding MGP_CASTEiJ_T0076892.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27191253 27218333 + MGP_CASTEiJ_P0076892 Ahcyl2 protein_coding protein_coding MGP_CASTEiJ_T0076893.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27191370 27204886 + Ahcyl2 protein_coding retained_intron MGP_CASTEiJ_T0076894.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27196852 27251543 + MGP_CASTEiJ_P0076894 Ahcyl2 protein_coding protein_coding MGP_CASTEiJ_T0076895.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27197157 27221437 + MGP_CASTEiJ_P0076895 Ahcyl2 protein_coding protein_coding MGP_CASTEiJ_T0076896.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27197182 27221430 + MGP_CASTEiJ_P0076896 Ahcyl2 protein_coding protein_coding MGP_CASTEiJ_T0076897.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27202853 27208548 + Ahcyl2 protein_coding processed_transcript MGP_CASTEiJ_T0076898.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27207621 27251548 + Ahcyl2 protein_coding retained_intron MGP_CASTEiJ_T0076899.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27213738 27216104 + Ahcyl2 protein_coding retained_intron MGP_CASTEiJ_T0076900.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27231542 27233952 + Ahcyl2 protein_coding retained_intron MGP_CASTEiJ_T0076901.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27234593 27248293 + Ahcyl2 protein_coding retained_intron MGP_CASTEiJ_T0076902.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27241294 27248445 + Ahcyl2 protein_coding processed_transcript MGP_CASTEiJ_T0076903.1 MGP_CASTEiJ_G0029629.1 mouse_genomes_project 6 27241766 27248389 + Ahcyl2 protein_coding processed_transcript MGP_CASTEiJ_T0077343.1 MGP_CASTEiJ_G0029711.1 mouse_genomes_project 6 38435910 38436970 + MGP_CASTEiJ_P0077343 Olfr460 protein_coding protein_coding MGP_CASTEiJ_T0000207.1 MGP_CASTEiJ_G0000156.1 mouse_genomes_project 6 69699579 69699876 + MGP_CASTEiJ_P0000207 Igkv8-19 IG_V_gene IG_V_gene MGP_CASTEiJ_T0079361.1 MGP_CASTEiJ_G0030180.1 mouse_genomes_project 6 106931663 107104763 + Cntn4 protein_coding processed_transcript MGP_CASTEiJ_T0079362.1 MGP_CASTEiJ_G0030180.1 mouse_genomes_project 6 106931748 107978644 + MGP_CASTEiJ_P0079362 Cntn4 protein_coding protein_coding MGP_CASTEiJ_T0079363.1 MGP_CASTEiJ_G0030180.1 mouse_genomes_project 6 106931748 108002883 + MGP_CASTEiJ_P0079363 Cntn4 protein_coding protein_coding MGP_CASTEiJ_T0079364.1 MGP_CASTEiJ_G0030180.1 mouse_genomes_project 6 106931778 108002888 + MGP_CASTEiJ_P0079364 Cntn4 protein_coding protein_coding MGP_CASTEiJ_T0079365.1 MGP_CASTEiJ_G0030180.1 mouse_genomes_project 6 107201421 107978650 + MGP_CASTEiJ_P0079365 Cntn4 protein_coding protein_coding MGP_CASTEiJ_T0079366.1 MGP_CASTEiJ_G0030180.1 mouse_genomes_project 6 107393772 107916571 + MGP_CASTEiJ_P0079366 Cntn4 protein_coding protein_coding MGP_CASTEiJ_T0079367.1 MGP_CASTEiJ_G0030180.1 mouse_genomes_project 6 107393925 107820860 + Cntn4 protein_coding processed_transcript MGP_CASTEiJ_T0079368.1 MGP_CASTEiJ_G0030180.1 mouse_genomes_project 6 107394013 107977866 + MGP_CASTEiJ_P0079368 Cntn4 protein_coding protein_coding MGP_CASTEiJ_T0079369.1 MGP_CASTEiJ_G0030180.1 mouse_genomes_project 6 107394062 107631713 + Cntn4 protein_coding processed_transcript MGP_CASTEiJ_T0079370.1 MGP_CASTEiJ_G0030180.1 mouse_genomes_project 6 107808237 108001335 + Cntn4 protein_coding processed_transcript MGP_CASTEiJ_T0079371.1 MGP_CASTEiJ_G0030180.1 mouse_genomes_project 6 107957727 108002770 + Cntn4 protein_coding processed_transcript MGP_CASTEiJ_T0079372.1 MGP_CASTEiJ_G0030180.1 mouse_genomes_project 6 107983643 107984618 + Cntn4 protein_coding retained_intron MGP_CASTEiJ_T0079373.1 MGP_CASTEiJ_G0030180.1 mouse_genomes_project 6 107997895 108001479 + Cntn4 protein_coding processed_transcript MGP_CASTEiJ_T0001886.1 MGP_CASTEiJ_G0001807.1 mouse_genomes_project 6 36904419 36905629 - TEC TEC MGP_CASTEiJ_T0002122.1 MGP_CASTEiJ_G0002042.1 mouse_genomes_project 6 152772771 152776025 + TEC TEC MGP_CASTEiJ_T0004839.1 MGP_CASTEiJ_G0004161.1 mouse_genomes_project 6 71572741 71575372 - Gm26628 antisense antisense MGP_CASTEiJ_T0014895.1 MGP_CASTEiJ_G0013058.1 mouse_genomes_project 6 73572821 73573007 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008559.1 MGP_CASTEiJ_G0006925.1 mouse_genomes_project 6 150798432 150801534 - lincRNA lincRNA MGP_CASTEiJ_T0077549.1 MGP_CASTEiJ_G0029788.1 mouse_genomes_project 6 46080607 46106837 - MGP_CASTEiJ_P0077549 Zfp777 protein_coding protein_coding MGP_CASTEiJ_T0077550.1 MGP_CASTEiJ_G0029788.1 mouse_genomes_project 6 46080624 46107570 - MGP_CASTEiJ_P0077550 Zfp777 protein_coding protein_coding MGP_CASTEiJ_T0077551.1 MGP_CASTEiJ_G0029788.1 mouse_genomes_project 6 46086805 46103145 - MGP_CASTEiJ_P0077551 Zfp777 protein_coding protein_coding MGP_CASTEiJ_T0077552.1 MGP_CASTEiJ_G0029788.1 mouse_genomes_project 6 46103064 46106837 - MGP_CASTEiJ_P0077552 Zfp777 protein_coding protein_coding MGP_CASTEiJ_T0077553.1 MGP_CASTEiJ_G0029788.1 mouse_genomes_project 6 46103346 46106617 - MGP_CASTEiJ_P0077553 Zfp777 protein_coding protein_coding MGP_CASTEiJ_T0077251.1 MGP_CASTEiJ_G0029690.1 mouse_genomes_project 6 36640833 36719884 + MGP_CASTEiJ_P0077251 Tbxas1 protein_coding protein_coding MGP_CASTEiJ_T0077252.1 MGP_CASTEiJ_G0029690.1 mouse_genomes_project 6 36686087 36858054 + MGP_CASTEiJ_P0077252 Tbxas1 protein_coding protein_coding MGP_CASTEiJ_T0077253.1 MGP_CASTEiJ_G0029690.1 mouse_genomes_project 6 36686112 36798817 + Tbxas1 protein_coding retained_intron MGP_CASTEiJ_T0077254.1 MGP_CASTEiJ_G0029690.1 mouse_genomes_project 6 36686131 36858054 + Tbxas1 protein_coding retained_intron MGP_CASTEiJ_T0077255.1 MGP_CASTEiJ_G0029690.1 mouse_genomes_project 6 36708365 36770120 + MGP_CASTEiJ_P0077255 Tbxas1 protein_coding protein_coding MGP_CASTEiJ_T0077256.1 MGP_CASTEiJ_G0029690.1 mouse_genomes_project 6 36738739 36752181 + Tbxas1 protein_coding processed_transcript MGP_CASTEiJ_T0077257.1 MGP_CASTEiJ_G0029690.1 mouse_genomes_project 6 36751964 36845833 + Tbxas1 protein_coding retained_intron MGP_CASTEiJ_T0101174.1 MGP_CASTEiJ_G0038087.1 mouse_genomes_project 6 56415462 56415591 - Gm25726 snoRNA snoRNA MGP_CASTEiJ_T0081072.1 MGP_CASTEiJ_G0030543.1 mouse_genomes_project 6 145673826 145824051 - MGP_CASTEiJ_P0081072 St8sia1 protein_coding protein_coding MGP_CASTEiJ_T0081073.1 MGP_CASTEiJ_G0030543.1 mouse_genomes_project 6 145680330 145823740 - MGP_CASTEiJ_P0081073 St8sia1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081074.1 MGP_CASTEiJ_G0030543.1 mouse_genomes_project 6 145680959 145751306 - St8sia1 protein_coding processed_transcript MGP_CASTEiJ_T0014724.1 MGP_CASTEiJ_G0012887.1 mouse_genomes_project 6 7704351 7710522 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079051.1 MGP_CASTEiJ_G0030114.1 mouse_genomes_project 6 90485709 90501193 + MGP_CASTEiJ_P0079051 Vmn1r44 protein_coding protein_coding MGP_CASTEiJ_T0079052.1 MGP_CASTEiJ_G0030114.1 mouse_genomes_project 6 90500885 90501993 + MGP_CASTEiJ_P0079052 Vmn1r44 protein_coding protein_coding MGP_CASTEiJ_T0077554.1 MGP_CASTEiJ_G0029789.1 mouse_genomes_project 6 46124372 46150671 - MGP_CASTEiJ_P0077554 Zfp746 protein_coding protein_coding MGP_CASTEiJ_T0077555.1 MGP_CASTEiJ_G0029789.1 mouse_genomes_project 6 46124372 46150671 - MGP_CASTEiJ_P0077555 Zfp746 protein_coding protein_coding MGP_CASTEiJ_T0077556.1 MGP_CASTEiJ_G0029789.1 mouse_genomes_project 6 46126732 46129347 - MGP_CASTEiJ_P0077556 Zfp746 protein_coding protein_coding MGP_CASTEiJ_T0077557.1 MGP_CASTEiJ_G0029789.1 mouse_genomes_project 6 46128192 46144262 - Zfp746 protein_coding retained_intron MGP_CASTEiJ_T0077558.1 MGP_CASTEiJ_G0029789.1 mouse_genomes_project 6 46143605 46147190 - Zfp746 protein_coding retained_intron MGP_CASTEiJ_T0077559.1 MGP_CASTEiJ_G0029789.1 mouse_genomes_project 6 46147215 46150624 - Zfp746 protein_coding retained_intron MGP_CASTEiJ_T0079515.1 MGP_CASTEiJ_G0030205.1 mouse_genomes_project 6 114833488 114843123 - MGP_CASTEiJ_P0079515 Camk1 protein_coding protein_coding MGP_CASTEiJ_T0079516.1 MGP_CASTEiJ_G0030205.1 mouse_genomes_project 6 114833492 114836002 - Camk1 protein_coding retained_intron MGP_CASTEiJ_T0079517.1 MGP_CASTEiJ_G0030205.1 mouse_genomes_project 6 114833501 114843043 - Camk1 protein_coding retained_intron MGP_CASTEiJ_T0079518.1 MGP_CASTEiJ_G0030205.1 mouse_genomes_project 6 114836095 114840057 - Camk1 protein_coding retained_intron MGP_CASTEiJ_T0079519.1 MGP_CASTEiJ_G0030205.1 mouse_genomes_project 6 114837268 114843117 - MGP_CASTEiJ_P0079519 Camk1 protein_coding protein_coding MGP_CASTEiJ_T0079520.1 MGP_CASTEiJ_G0030205.1 mouse_genomes_project 6 114840041 114843102 - Camk1 protein_coding retained_intron MGP_CASTEiJ_T0014706.1 MGP_CASTEiJ_G0012869.1 mouse_genomes_project 6 1576043 1576211 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015000.1 MGP_CASTEiJ_G0013163.1 mouse_genomes_project 6 118511058 118511489 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079223.1 MGP_CASTEiJ_G0030151.1 mouse_genomes_project 6 95357542 95466091 + MGP_CASTEiJ_P0079223 Slc25a26 protein_coding protein_coding MGP_CASTEiJ_T0079224.1 MGP_CASTEiJ_G0030151.1 mouse_genomes_project 6 95357544 95465475 + MGP_CASTEiJ_P0079224 Slc25a26 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079225.1 MGP_CASTEiJ_G0030151.1 mouse_genomes_project 6 95357580 95466091 + MGP_CASTEiJ_P0079225 Slc25a26 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079226.1 MGP_CASTEiJ_G0030151.1 mouse_genomes_project 6 95357760 95370083 + Slc25a26 protein_coding processed_transcript MGP_CASTEiJ_T0079227.1 MGP_CASTEiJ_G0030151.1 mouse_genomes_project 6 95366758 95457553 + MGP_CASTEiJ_P0079227 Slc25a26 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079228.1 MGP_CASTEiJ_G0030151.1 mouse_genomes_project 6 95393156 95465283 + Slc25a26 protein_coding processed_transcript MGP_CASTEiJ_T0079229.1 MGP_CASTEiJ_G0030151.1 mouse_genomes_project 6 95440036 95465003 + Slc25a26 protein_coding processed_transcript MGP_CASTEiJ_T0001864.1 MGP_CASTEiJ_G0001785.1 mouse_genomes_project 6 18383509 18390135 + TEC TEC MGP_CASTEiJ_T0014896.1 MGP_CASTEiJ_G0013059.1 mouse_genomes_project 6 74936891 74937393 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076620.1 MGP_CASTEiJ_G0029572.1 mouse_genomes_project 6 14999689 15060689 - MGP_CASTEiJ_P0076620 Asz1 protein_coding protein_coding MGP_CASTEiJ_T0076621.1 MGP_CASTEiJ_G0029572.1 mouse_genomes_project 6 14999708 15060676 - Asz1 protein_coding retained_intron MGP_CASTEiJ_T0076622.1 MGP_CASTEiJ_G0029572.1 mouse_genomes_project 6 15024542 15025846 - Asz1 protein_coding retained_intron MGP_CASTEiJ_T0076623.1 MGP_CASTEiJ_G0029572.1 mouse_genomes_project 6 15026514 15060677 - MGP_CASTEiJ_P0076623 Asz1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076624.1 MGP_CASTEiJ_G0029572.1 mouse_genomes_project 6 15027801 15060693 - Asz1 protein_coding processed_transcript MGP_CASTEiJ_T0008352.1 MGP_CASTEiJ_G0006772.1 mouse_genomes_project 6 33168224 33172803 - Gm42931 lincRNA lincRNA MGP_CASTEiJ_T0015053.1 MGP_CASTEiJ_G0013216.1 mouse_genomes_project 6 131369954 131370067 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017506.1 MGP_CASTEiJ_G0014945.1 mouse_genomes_project 6 46971406 46992658 - Gm44764 processed_transcript lincRNA MGP_CASTEiJ_T0017507.1 MGP_CASTEiJ_G0014945.1 mouse_genomes_project 6 46991783 46992665 - Gm44764 processed_transcript retained_intron MGP_CASTEiJ_T0078932.1 MGP_CASTEiJ_G0030094.1 mouse_genomes_project 6 88571085 88592644 + MGP_CASTEiJ_P0078932 Rpn1 protein_coding protein_coding MGP_CASTEiJ_T0078933.1 MGP_CASTEiJ_G0030094.1 mouse_genomes_project 6 88571166 88582918 + MGP_CASTEiJ_P0078933 Rpn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078934.1 MGP_CASTEiJ_G0030094.1 mouse_genomes_project 6 88581166 88588343 + Rpn1 protein_coding retained_intron MGP_CASTEiJ_T0078935.1 MGP_CASTEiJ_G0030094.1 mouse_genomes_project 6 88586546 88588600 + Rpn1 protein_coding retained_intron MGP_CASTEiJ_T0078936.1 MGP_CASTEiJ_G0030094.1 mouse_genomes_project 6 88588808 88590728 + Rpn1 protein_coding retained_intron MGP_CASTEiJ_T0000171.1 MGP_CASTEiJ_G0000130.1 mouse_genomes_project 6 68277967 68278437 - MGP_CASTEiJ_P0000171 IG_V_gene IG_V_gene MGP_CASTEiJ_T0101216.1 MGP_CASTEiJ_G0038129.1 mouse_genomes_project 6 137523938 137524072 + Gm22881 snoRNA snoRNA MGP_CASTEiJ_T0017556.1 MGP_CASTEiJ_G0014962.1 mouse_genomes_project 6 122895348 122900810 + Gm4651 processed_transcript antisense MGP_CASTEiJ_T0017557.1 MGP_CASTEiJ_G0014962.1 mouse_genomes_project 6 122895481 122897012 + Gm4651 processed_transcript retained_intron MGP_CASTEiJ_T0002062.1 MGP_CASTEiJ_G0001982.1 mouse_genomes_project 6 119516902 119518103 - TEC TEC MGP_CASTEiJ_T0098639.1 MGP_CASTEiJ_G0035570.1 mouse_genomes_project 6 148009470 148009585 - Gm23071 rRNA rRNA MGP_CASTEiJ_T0008411.1 MGP_CASTEiJ_G0006813.1 mouse_genomes_project 6 70698643 70699934 + Gm44427 lincRNA lincRNA MGP_CASTEiJ_T0004850.1 MGP_CASTEiJ_G0004170.1 mouse_genomes_project 6 83235619 83238066 - Ccdc142os antisense antisense MGP_CASTEiJ_T0004851.1 MGP_CASTEiJ_G0004170.1 mouse_genomes_project 6 83235630 83238065 - Ccdc142os antisense antisense MGP_CASTEiJ_T0004852.1 MGP_CASTEiJ_G0004170.1 mouse_genomes_project 6 83235878 83237999 - Ccdc142os antisense antisense MGP_CASTEiJ_T0004853.1 MGP_CASTEiJ_G0004170.1 mouse_genomes_project 6 83236758 83238066 - Ccdc142os antisense antisense MGP_CASTEiJ_T0008279.1 MGP_CASTEiJ_G0006726.1 mouse_genomes_project 6 1548194 1548573 - Gm20714 lincRNA lincRNA MGP_CASTEiJ_T0008280.1 MGP_CASTEiJ_G0006726.1 mouse_genomes_project 6 1548194 1559376 - Gm20714 lincRNA lincRNA MGP_CASTEiJ_T0008281.1 MGP_CASTEiJ_G0006726.1 mouse_genomes_project 6 1548196 1556170 - Gm20714 lincRNA lincRNA MGP_CASTEiJ_T0001913.1 MGP_CASTEiJ_G0001834.1 mouse_genomes_project 6 44791404 44795123 + TEC TEC MGP_CASTEiJ_T0098638.1 MGP_CASTEiJ_G0035569.1 mouse_genomes_project 6 143067901 143068005 + n-R5s168 rRNA rRNA MGP_CASTEiJ_T0077622.1 MGP_CASTEiJ_G0029803.1 mouse_genomes_project 6 46792753 46796226 + MGP_CASTEiJ_P0077622 protein_coding protein_coding MGP_CASTEiJ_T0077623.1 MGP_CASTEiJ_G0029803.1 mouse_genomes_project 6 46795035 46796635 + MGP_CASTEiJ_P0077623 protein_coding protein_coding MGP_CASTEiJ_T0101815.1 MGP_CASTEiJ_G0038579.1 mouse_genomes_project 6 135880507 135882659 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0078744.1 MGP_CASTEiJ_G0030058.1 mouse_genomes_project 6 86402549 86481464 + Add2 protein_coding retained_intron MGP_CASTEiJ_T0078745.1 MGP_CASTEiJ_G0030058.1 mouse_genomes_project 6 86402561 86503471 + MGP_CASTEiJ_P0078745 Add2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0078746.1 MGP_CASTEiJ_G0030058.1 mouse_genomes_project 6 86402615 86494152 + MGP_CASTEiJ_P0078746 Add2 protein_coding protein_coding MGP_CASTEiJ_T0078747.1 MGP_CASTEiJ_G0030058.1 mouse_genomes_project 6 86428434 86475884 + MGP_CASTEiJ_P0078747 Add2 protein_coding protein_coding MGP_CASTEiJ_T0078748.1 MGP_CASTEiJ_G0030058.1 mouse_genomes_project 6 86460290 86494150 + MGP_CASTEiJ_P0078748 Add2 protein_coding protein_coding MGP_CASTEiJ_T0078749.1 MGP_CASTEiJ_G0030058.1 mouse_genomes_project 6 86465057 86492981 + MGP_CASTEiJ_P0078749 Add2 protein_coding protein_coding MGP_CASTEiJ_T0078750.1 MGP_CASTEiJ_G0030058.1 mouse_genomes_project 6 86468155 86503491 + MGP_CASTEiJ_P0078750 Add2 protein_coding protein_coding MGP_CASTEiJ_T0015101.1 MGP_CASTEiJ_G0013264.1 mouse_genomes_project 6 151811913 151812519 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001899.1 MGP_CASTEiJ_G0001820.1 mouse_genomes_project 6 43266774 43268180 + TEC TEC MGP_CASTEiJ_T0076843.1 MGP_CASTEiJ_G0029621.1 mouse_genomes_project 6 26737168 26742943 + Flnc protein_coding retained_intron MGP_CASTEiJ_T0076844.1 MGP_CASTEiJ_G0029621.1 mouse_genomes_project 6 26737188 26765563 + MGP_CASTEiJ_P0076844 Flnc protein_coding protein_coding MGP_CASTEiJ_T0076845.1 MGP_CASTEiJ_G0029621.1 mouse_genomes_project 6 26737188 26765563 + MGP_CASTEiJ_P0076845 Flnc protein_coding protein_coding MGP_CASTEiJ_T0079693.1 MGP_CASTEiJ_G0030236.1 mouse_genomes_project 6 117051353 117062648 + MGP_CASTEiJ_P0079693 Tsen2 protein_coding protein_coding MGP_CASTEiJ_T0079694.1 MGP_CASTEiJ_G0030236.1 mouse_genomes_project 6 117051353 117088622 + MGP_CASTEiJ_P0079694 Tsen2 protein_coding protein_coding MGP_CASTEiJ_T0079695.1 MGP_CASTEiJ_G0030236.1 mouse_genomes_project 6 117051391 117068038 + Tsen2 protein_coding processed_transcript MGP_CASTEiJ_T0079696.1 MGP_CASTEiJ_G0030236.1 mouse_genomes_project 6 117051395 117060736 + Tsen2 protein_coding retained_intron MGP_CASTEiJ_T0079697.1 MGP_CASTEiJ_G0030236.1 mouse_genomes_project 6 117084454 117087985 + Tsen2 protein_coding retained_intron MGP_CASTEiJ_T0076489.1 MGP_CASTEiJ_G0029553.1 mouse_genomes_project 6 8676463 8702769 + MGP_CASTEiJ_P0076489 Phf14 protein_coding protein_coding MGP_CASTEiJ_T0076490.1 MGP_CASTEiJ_G0029553.1 mouse_genomes_project 6 8676538 8728676 + MGP_CASTEiJ_P0076490 Phf14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076491.1 MGP_CASTEiJ_G0029553.1 mouse_genomes_project 6 8695177 8805813 + MGP_CASTEiJ_P0076491 Phf14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076492.1 MGP_CASTEiJ_G0029553.1 mouse_genomes_project 6 8695189 8769960 + MGP_CASTEiJ_P0076492 Phf14 protein_coding protein_coding MGP_CASTEiJ_T0076493.1 MGP_CASTEiJ_G0029553.1 mouse_genomes_project 6 8695223 8770028 + MGP_CASTEiJ_P0076493 Phf14 protein_coding protein_coding MGP_CASTEiJ_T0076494.1 MGP_CASTEiJ_G0029553.1 mouse_genomes_project 6 8695224 8852335 + MGP_CASTEiJ_P0076494 Phf14 protein_coding protein_coding MGP_CASTEiJ_T0076495.1 MGP_CASTEiJ_G0029553.1 mouse_genomes_project 6 8695512 8852292 + MGP_CASTEiJ_P0076495 Phf14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076496.1 MGP_CASTEiJ_G0029553.1 mouse_genomes_project 6 8696099 8748391 + MGP_CASTEiJ_P0076496 Phf14 protein_coding protein_coding MGP_CASTEiJ_T0076497.1 MGP_CASTEiJ_G0029553.1 mouse_genomes_project 6 8748996 8750593 + Phf14 protein_coding retained_intron MGP_CASTEiJ_T0076498.1 MGP_CASTEiJ_G0029553.1 mouse_genomes_project 6 8752791 8757213 + Phf14 protein_coding retained_intron MGP_CASTEiJ_T0076499.1 MGP_CASTEiJ_G0029553.1 mouse_genomes_project 6 8768766 8852230 + MGP_CASTEiJ_P0076499 Phf14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076500.1 MGP_CASTEiJ_G0029553.1 mouse_genomes_project 6 8808092 8814112 + Phf14 protein_coding retained_intron MGP_CASTEiJ_T0014949.1 MGP_CASTEiJ_G0013112.1 mouse_genomes_project 6 96121679 96122030 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015038.1 MGP_CASTEiJ_G0013201.1 mouse_genomes_project 6 129214052 129216836 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008341.1 MGP_CASTEiJ_G0006763.1 mouse_genomes_project 6 29224857 29355091 + Gm13849 lincRNA lincRNA MGP_CASTEiJ_T0079566.1 MGP_CASTEiJ_G0030214.1 mouse_genomes_project 6 115000192 115011931 + MGP_CASTEiJ_P0079566 Creld1 protein_coding protein_coding MGP_CASTEiJ_T0079567.1 MGP_CASTEiJ_G0030214.1 mouse_genomes_project 6 115000311 115007977 + Creld1 protein_coding retained_intron MGP_CASTEiJ_T0079568.1 MGP_CASTEiJ_G0030214.1 mouse_genomes_project 6 115000743 115007142 + Creld1 protein_coding retained_intron MGP_CASTEiJ_T0079569.1 MGP_CASTEiJ_G0030214.1 mouse_genomes_project 6 115006230 115008463 + Creld1 protein_coding retained_intron MGP_CASTEiJ_T0079570.1 MGP_CASTEiJ_G0030214.1 mouse_genomes_project 6 115010608 115011936 + Creld1 protein_coding retained_intron MGP_CASTEiJ_T0079571.1 MGP_CASTEiJ_G0030214.1 mouse_genomes_project 6 115010610 115011928 + Creld1 protein_coding retained_intron MGP_CASTEiJ_T0008561.1 MGP_CASTEiJ_G0006927.1 mouse_genomes_project 6 151720280 151723213 - Gm6313 lincRNA lincRNA MGP_CASTEiJ_T0008562.1 MGP_CASTEiJ_G0006927.1 mouse_genomes_project 6 151720280 151727839 - Gm6313 lincRNA lincRNA MGP_CASTEiJ_T0077362.1 MGP_CASTEiJ_G0029721.1 mouse_genomes_project 6 38899620 38904862 - MGP_CASTEiJ_P0077362 2210010C04Rik protein_coding protein_coding MGP_CASTEiJ_T0014902.1 MGP_CASTEiJ_G0013065.1 mouse_genomes_project 6 77994166 77995186 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099959.1 MGP_CASTEiJ_G0036872.1 mouse_genomes_project 6 76048818 76048981 - Gm22283 snRNA snRNA MGP_CASTEiJ_T0014850.1 MGP_CASTEiJ_G0013013.1 mouse_genomes_project 6 64499756 64500494 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002064.1 MGP_CASTEiJ_G0001984.1 mouse_genomes_project 6 122740463 122742551 - TEC TEC MGP_CASTEiJ_T0079998.1 MGP_CASTEiJ_G0030289.1 mouse_genomes_project 6 122061995 122135501 - MGP_CASTEiJ_P0079998 Ccdc77 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079999.1 MGP_CASTEiJ_G0030289.1 mouse_genomes_project 6 122093605 122135708 - MGP_CASTEiJ_P0079999 Ccdc77 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080000.1 MGP_CASTEiJ_G0030289.1 mouse_genomes_project 6 122093605 122126695 - MGP_CASTEiJ_P0080000 Ccdc77 protein_coding protein_coding MGP_CASTEiJ_T0080001.1 MGP_CASTEiJ_G0030289.1 mouse_genomes_project 6 122094319 122126738 - MGP_CASTEiJ_P0080001 Ccdc77 protein_coding protein_coding MGP_CASTEiJ_T0080002.1 MGP_CASTEiJ_G0030289.1 mouse_genomes_project 6 122098857 122126676 - MGP_CASTEiJ_P0080002 Ccdc77 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080003.1 MGP_CASTEiJ_G0030289.1 mouse_genomes_project 6 122101827 122126633 - MGP_CASTEiJ_P0080003 Ccdc77 protein_coding protein_coding MGP_CASTEiJ_T0080004.1 MGP_CASTEiJ_G0030289.1 mouse_genomes_project 6 122101860 122126606 - MGP_CASTEiJ_P0080004 Ccdc77 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080005.1 MGP_CASTEiJ_G0030289.1 mouse_genomes_project 6 122104664 122126643 - Ccdc77 protein_coding retained_intron MGP_CASTEiJ_T0080006.1 MGP_CASTEiJ_G0030289.1 mouse_genomes_project 6 122117970 122135690 - MGP_CASTEiJ_P0080006 Ccdc77 protein_coding protein_coding MGP_CASTEiJ_T0080007.1 MGP_CASTEiJ_G0030289.1 mouse_genomes_project 6 122121159 122126633 - Ccdc77 protein_coding retained_intron MGP_CASTEiJ_T0011308.1 MGP_CASTEiJ_G0009496.1 mouse_genomes_project 6 45846347 45846459 - Rny1 misc_RNA misc_RNA MGP_CASTEiJ_T0077239.1 MGP_CASTEiJ_G0029687.1 mouse_genomes_project 6 36360713 36383744 - MGP_CASTEiJ_P0077239 Klrg2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077240.1 MGP_CASTEiJ_G0029687.1 mouse_genomes_project 6 36370052 36383835 - MGP_CASTEiJ_P0077240 Klrg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077241.1 MGP_CASTEiJ_G0029687.1 mouse_genomes_project 6 36371022 36383835 - MGP_CASTEiJ_P0077241 Klrg2 protein_coding protein_coding MGP_CASTEiJ_T0077242.1 MGP_CASTEiJ_G0029687.1 mouse_genomes_project 6 36371621 36383844 - MGP_CASTEiJ_P0077242 Klrg2 protein_coding protein_coding MGP_CASTEiJ_T0014904.1 MGP_CASTEiJ_G0013067.1 mouse_genomes_project 6 78415672 78416168 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102382.1 MGP_CASTEiJ_G0039107.1 mouse_genomes_project 6 40610785 40611132 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0014860.1 MGP_CASTEiJ_G0013023.1 mouse_genomes_project 6 65336621 65337315 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002095.1 MGP_CASTEiJ_G0002015.1 mouse_genomes_project 6 139737681 139738735 - TEC TEC MGP_CASTEiJ_T0004858.1 MGP_CASTEiJ_G0004173.1 mouse_genomes_project 6 83876502 83897949 - Vax2os antisense antisense MGP_CASTEiJ_T0004859.1 MGP_CASTEiJ_G0004173.1 mouse_genomes_project 6 83883823 83896708 - Vax2os antisense antisense MGP_CASTEiJ_T0004860.1 MGP_CASTEiJ_G0004173.1 mouse_genomes_project 6 83888021 83889426 - Vax2os antisense antisense MGP_CASTEiJ_T0004861.1 MGP_CASTEiJ_G0004173.1 mouse_genomes_project 6 83888372 83889505 - Vax2os antisense antisense MGP_CASTEiJ_T0102375.1 MGP_CASTEiJ_G0039100.1 mouse_genomes_project 6 38670690 38740228 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101213.1 MGP_CASTEiJ_G0038126.1 mouse_genomes_project 6 127321726 127322051 - Scarna10 snoRNA snoRNA MGP_CASTEiJ_T0077928.1 MGP_CASTEiJ_G0029873.1 mouse_genomes_project 6 54381971 54536111 + MGP_CASTEiJ_P0077928 Ccdc129 protein_coding protein_coding MGP_CASTEiJ_T0077929.1 MGP_CASTEiJ_G0029873.1 mouse_genomes_project 6 54439797 54536224 + Ccdc129 protein_coding processed_transcript MGP_CASTEiJ_T0001995.1 MGP_CASTEiJ_G0001916.1 mouse_genomes_project 6 88338791 88339876 + TEC TEC MGP_CASTEiJ_T0080288.1 MGP_CASTEiJ_G0030351.1 mouse_genomes_project 6 126910531 126916692 - MGP_CASTEiJ_P0080288 Tpi1 protein_coding protein_coding MGP_CASTEiJ_T0080289.1 MGP_CASTEiJ_G0030351.1 mouse_genomes_project 6 126911173 126914777 - MGP_CASTEiJ_P0080289 Tpi1 protein_coding protein_coding MGP_CASTEiJ_T0080290.1 MGP_CASTEiJ_G0030351.1 mouse_genomes_project 6 126913951 126914536 - Tpi1 protein_coding retained_intron MGP_CASTEiJ_T0076708.1 MGP_CASTEiJ_G0029590.1 mouse_genomes_project 6 21251029 21342897 - MGP_CASTEiJ_P0076708 Slc13a1 protein_coding protein_coding MGP_CASTEiJ_T0076709.1 MGP_CASTEiJ_G0029590.1 mouse_genomes_project 6 21251295 21274649 - Slc13a1 protein_coding processed_transcript MGP_CASTEiJ_T0076710.1 MGP_CASTEiJ_G0029590.1 mouse_genomes_project 6 21271364 21274646 - Slc13a1 protein_coding retained_intron MGP_CASTEiJ_T0076711.1 MGP_CASTEiJ_G0029590.1 mouse_genomes_project 6 21305343 21342895 - Slc13a1 protein_coding retained_intron MGP_CASTEiJ_T0080434.1 MGP_CASTEiJ_G0030376.1 mouse_genomes_project 6 127427757 127435539 - MGP_CASTEiJ_P0080434 Tuba3a protein_coding protein_coding MGP_CASTEiJ_T0002593.1 MGP_CASTEiJ_G0002489.1 mouse_genomes_project 6 38932229 38932700 + MGP_CASTEiJ_P0002593 Trbv5 TR_V_gene TR_V_gene MGP_CASTEiJ_T0077823.1 MGP_CASTEiJ_G0029852.1 mouse_genomes_project 6 51712728 51823054 + 9430076C15Rik protein_coding retained_intron MGP_CASTEiJ_T0077824.1 MGP_CASTEiJ_G0029852.1 mouse_genomes_project 6 51712728 52139099 + MGP_CASTEiJ_P0077824 9430076C15Rik protein_coding protein_coding MGP_CASTEiJ_T0077825.1 MGP_CASTEiJ_G0029852.1 mouse_genomes_project 6 51712744 51827246 + 9430076C15Rik protein_coding processed_transcript MGP_CASTEiJ_T0077826.1 MGP_CASTEiJ_G0029852.1 mouse_genomes_project 6 51712753 51829741 + 9430076C15Rik protein_coding processed_transcript MGP_CASTEiJ_T0077827.1 MGP_CASTEiJ_G0029852.1 mouse_genomes_project 6 51712776 51820463 + 9430076C15Rik protein_coding processed_transcript MGP_CASTEiJ_T0077828.1 MGP_CASTEiJ_G0029852.1 mouse_genomes_project 6 51712776 52083690 + 9430076C15Rik protein_coding processed_transcript MGP_CASTEiJ_T0077829.1 MGP_CASTEiJ_G0029852.1 mouse_genomes_project 6 51712776 51714184 + 9430076C15Rik protein_coding processed_transcript MGP_CASTEiJ_T0077830.1 MGP_CASTEiJ_G0029852.1 mouse_genomes_project 6 51712776 52045322 + 9430076C15Rik protein_coding retained_intron MGP_CASTEiJ_T0077831.1 MGP_CASTEiJ_G0029852.1 mouse_genomes_project 6 51712779 51843780 + 9430076C15Rik protein_coding processed_transcript MGP_CASTEiJ_T0077832.1 MGP_CASTEiJ_G0029852.1 mouse_genomes_project 6 51715899 52132263 + MGP_CASTEiJ_P0077832 9430076C15Rik protein_coding protein_coding MGP_CASTEiJ_T0077833.1 MGP_CASTEiJ_G0029852.1 mouse_genomes_project 6 51739167 52132263 + MGP_CASTEiJ_P0077833 9430076C15Rik protein_coding protein_coding MGP_CASTEiJ_T0077834.1 MGP_CASTEiJ_G0029852.1 mouse_genomes_project 6 52005354 52139090 + MGP_CASTEiJ_P0077834 9430076C15Rik protein_coding protein_coding MGP_CASTEiJ_T0077835.1 MGP_CASTEiJ_G0029852.1 mouse_genomes_project 6 52005429 52047818 + 9430076C15Rik protein_coding retained_intron MGP_CASTEiJ_T0077836.1 MGP_CASTEiJ_G0029852.1 mouse_genomes_project 6 52005430 52043677 + MGP_CASTEiJ_P0077836 9430076C15Rik protein_coding protein_coding MGP_CASTEiJ_T0002016.1 MGP_CASTEiJ_G0001937.1 mouse_genomes_project 6 92377776 92379719 - TEC TEC MGP_CASTEiJ_T0002603.1 MGP_CASTEiJ_G0002498.1 mouse_genomes_project 6 39037028 39037523 + MGP_CASTEiJ_P0002603 Trbv17 TR_V_gene TR_V_gene MGP_CASTEiJ_T0101217.1 MGP_CASTEiJ_G0038130.1 mouse_genomes_project 6 138005190 138005305 + Gm25136 snoRNA snoRNA MGP_CASTEiJ_T0102400.1 MGP_CASTEiJ_G0039125.1 mouse_genomes_project 6 56813274 56814217 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0079050.1 MGP_CASTEiJ_G0030113.1 mouse_genomes_project 6 90465756 90466825 - MGP_CASTEiJ_P0079050 Vmn1r43 protein_coding protein_coding MGP_CASTEiJ_T0099956.1 MGP_CASTEiJ_G0036869.1 mouse_genomes_project 6 65332407 65332507 - Gm23625 snRNA snRNA MGP_CASTEiJ_T0014920.1 MGP_CASTEiJ_G0013083.1 mouse_genomes_project 6 85343080 85343624 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015073.1 MGP_CASTEiJ_G0013236.1 mouse_genomes_project 6 137183146 137183555 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101202.1 MGP_CASTEiJ_G0038115.1 mouse_genomes_project 6 119730470 119730602 - Gm23908 snoRNA snoRNA MGP_CASTEiJ_T0011317.1 MGP_CASTEiJ_G0009505.1 mouse_genomes_project 6 50614550 50614754 + Gm27454 misc_RNA misc_RNA MGP_CASTEiJ_T0014973.1 MGP_CASTEiJ_G0013136.1 mouse_genomes_project 6 108646111 108646337 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077399.1 MGP_CASTEiJ_G0029740.1 mouse_genomes_project 6 39921076 39929425 + MGP_CASTEiJ_P0077399 Sva protein_coding protein_coding MGP_CASTEiJ_T0077400.1 MGP_CASTEiJ_G0029740.1 mouse_genomes_project 6 39921076 39929431 + MGP_CASTEiJ_P0077400 Sva protein_coding protein_coding MGP_CASTEiJ_T0001950.1 MGP_CASTEiJ_G0001871.1 mouse_genomes_project 6 75363761 75365127 - TEC TEC MGP_CASTEiJ_T0001989.1 MGP_CASTEiJ_G0001910.1 mouse_genomes_project 6 87779541 87780321 - TEC TEC MGP_CASTEiJ_T0002119.1 MGP_CASTEiJ_G0002039.1 mouse_genomes_project 6 152032570 152034108 - TEC TEC MGP_CASTEiJ_T0079609.1 MGP_CASTEiJ_G0030223.1 mouse_genomes_project 6 115261521 115265247 - MGP_CASTEiJ_P0079609 Ghrl protein_coding protein_coding MGP_CASTEiJ_T0079610.1 MGP_CASTEiJ_G0030223.1 mouse_genomes_project 6 115261521 115263094 - MGP_CASTEiJ_P0079610 Ghrl protein_coding protein_coding MGP_CASTEiJ_T0079611.1 MGP_CASTEiJ_G0030223.1 mouse_genomes_project 6 115261526 115264816 - MGP_CASTEiJ_P0079611 Ghrl protein_coding protein_coding MGP_CASTEiJ_T0079612.1 MGP_CASTEiJ_G0030223.1 mouse_genomes_project 6 115261534 115265215 - MGP_CASTEiJ_P0079612 Ghrl protein_coding protein_coding MGP_CASTEiJ_T0079613.1 MGP_CASTEiJ_G0030223.1 mouse_genomes_project 6 115261574 115264805 - MGP_CASTEiJ_P0079613 Ghrl protein_coding protein_coding MGP_CASTEiJ_T0079614.1 MGP_CASTEiJ_G0030223.1 mouse_genomes_project 6 115261652 115264787 - MGP_CASTEiJ_P0079614 Ghrl protein_coding protein_coding MGP_CASTEiJ_T0079615.1 MGP_CASTEiJ_G0030223.1 mouse_genomes_project 6 115264532 115264812 - Ghrl protein_coding retained_intron MGP_CASTEiJ_T0014839.1 MGP_CASTEiJ_G0013002.1 mouse_genomes_project 6 61483945 61485477 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011331.1 MGP_CASTEiJ_G0009519.1 mouse_genomes_project 6 109773536 109773891 + Gm27813 misc_RNA misc_RNA MGP_CASTEiJ_T0078755.1 MGP_CASTEiJ_G0030060.1 mouse_genomes_project 6 86769383 86778175 + MGP_CASTEiJ_P0078755 Fam136a protein_coding protein_coding MGP_CASTEiJ_T0078756.1 MGP_CASTEiJ_G0030060.1 mouse_genomes_project 6 86769451 86770748 + Fam136a protein_coding retained_intron MGP_CASTEiJ_T0078757.1 MGP_CASTEiJ_G0030060.1 mouse_genomes_project 6 86769461 86772518 + MGP_CASTEiJ_P0078757 Fam136a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000272.1 MGP_CASTEiJ_G0000221.1 mouse_genomes_project 6 67767683 67768462 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0001888.1 MGP_CASTEiJ_G0001809.1 mouse_genomes_project 6 37958951 37962462 + TEC TEC MGP_CASTEiJ_T0002110.1 MGP_CASTEiJ_G0002030.1 mouse_genomes_project 6 148989459 148992325 + TEC TEC MGP_CASTEiJ_T0002024.1 MGP_CASTEiJ_G0001945.1 mouse_genomes_project 6 95668937 95669938 + TEC TEC MGP_CASTEiJ_T0002101.1 MGP_CASTEiJ_G0002021.1 mouse_genomes_project 6 143057819 143058486 + TEC TEC MGP_CASTEiJ_T0008526.1 MGP_CASTEiJ_G0006904.1 mouse_genomes_project 6 137285322 137314878 + Lockd lincRNA lincRNA MGP_CASTEiJ_T0008527.1 MGP_CASTEiJ_G0006904.1 mouse_genomes_project 6 137285328 137309848 + Lockd lincRNA lincRNA MGP_CASTEiJ_T0008528.1 MGP_CASTEiJ_G0006904.1 mouse_genomes_project 6 137285363 137309846 + Lockd lincRNA lincRNA MGP_CASTEiJ_T0008529.1 MGP_CASTEiJ_G0006904.1 mouse_genomes_project 6 137285385 137309989 + Lockd lincRNA lincRNA MGP_CASTEiJ_T0014741.1 MGP_CASTEiJ_G0012904.1 mouse_genomes_project 6 16117038 16118351 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008489.1 MGP_CASTEiJ_G0006874.1 mouse_genomes_project 6 118724303 118726310 + D030044L04Rik lincRNA lincRNA MGP_CASTEiJ_T0002071.1 MGP_CASTEiJ_G0001991.1 mouse_genomes_project 6 129572567 129574793 + TEC TEC MGP_CASTEiJ_T0004825.1 MGP_CASTEiJ_G0004148.1 mouse_genomes_project 6 50683656 50690134 - Evx1os antisense antisense MGP_CASTEiJ_T0004826.1 MGP_CASTEiJ_G0004148.1 mouse_genomes_project 6 50686109 50688807 - Evx1os antisense antisense MGP_CASTEiJ_T0077945.1 MGP_CASTEiJ_G0029876.1 mouse_genomes_project 6 55245325 55248789 - MGP_CASTEiJ_P0077945 Lsm5 protein_coding protein_coding MGP_CASTEiJ_T0077946.1 MGP_CASTEiJ_G0029876.1 mouse_genomes_project 6 55245327 55248756 - Lsm5 protein_coding retained_intron MGP_CASTEiJ_T0077947.1 MGP_CASTEiJ_G0029876.1 mouse_genomes_project 6 55245385 55248735 - MGP_CASTEiJ_P0077947 Lsm5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077948.1 MGP_CASTEiJ_G0029876.1 mouse_genomes_project 6 55245519 55248747 - MGP_CASTEiJ_P0077948 Lsm5 protein_coding protein_coding MGP_CASTEiJ_T0077453.1 MGP_CASTEiJ_G0029757.1 mouse_genomes_project 6 40458899 40461599 - Tcaf3 protein_coding processed_transcript MGP_CASTEiJ_T0077454.1 MGP_CASTEiJ_G0029757.1 mouse_genomes_project 6 40461182 40471318 - MGP_CASTEiJ_P0077454 Tcaf3 protein_coding protein_coding MGP_CASTEiJ_T0077455.1 MGP_CASTEiJ_G0029757.1 mouse_genomes_project 6 40468109 40471638 - MGP_CASTEiJ_P0077455 Tcaf3 protein_coding protein_coding MGP_CASTEiJ_T0076864.1 MGP_CASTEiJ_G0029626.1 mouse_genomes_project 6 26849815 26918470 - MGP_CASTEiJ_P0076864 Tnpo3 protein_coding protein_coding MGP_CASTEiJ_T0076865.1 MGP_CASTEiJ_G0029626.1 mouse_genomes_project 6 26849815 26918190 - MGP_CASTEiJ_P0076865 Tnpo3 protein_coding protein_coding MGP_CASTEiJ_T0076866.1 MGP_CASTEiJ_G0029626.1 mouse_genomes_project 6 26849974 26869004 - MGP_CASTEiJ_P0076866 Tnpo3 protein_coding protein_coding MGP_CASTEiJ_T0076868.1 MGP_CASTEiJ_G0029626.1 mouse_genomes_project 6 26850568 26918394 - MGP_CASTEiJ_P0076868 Tnpo3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076869.1 MGP_CASTEiJ_G0029626.1 mouse_genomes_project 6 26863798 26865989 - Tnpo3 protein_coding retained_intron MGP_CASTEiJ_T0076870.1 MGP_CASTEiJ_G0029626.1 mouse_genomes_project 6 26873805 26918206 - Tnpo3 protein_coding retained_intron MGP_CASTEiJ_T0076871.1 MGP_CASTEiJ_G0029626.1 mouse_genomes_project 6 26877370 26880451 - Tnpo3 protein_coding retained_intron MGP_CASTEiJ_T0076872.1 MGP_CASTEiJ_G0029626.1 mouse_genomes_project 6 26887261 26891040 - Tnpo3 protein_coding retained_intron MGP_CASTEiJ_T0076873.1 MGP_CASTEiJ_G0029626.1 mouse_genomes_project 6 26888756 26918402 - Tnpo3 protein_coding retained_intron MGP_CASTEiJ_T0076874.1 MGP_CASTEiJ_G0029626.1 mouse_genomes_project 6 26891995 26918217 - Tnpo3 protein_coding retained_intron MGP_CASTEiJ_T0076875.1 MGP_CASTEiJ_G0029626.1 mouse_genomes_project 6 26897762 26918196 - Tnpo3 protein_coding processed_transcript MGP_CASTEiJ_T0015020.1 MGP_CASTEiJ_G0013183.1 mouse_genomes_project 6 124298166 124298460 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015014.1 MGP_CASTEiJ_G0013177.1 mouse_genomes_project 6 123571512 123571919 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014940.1 MGP_CASTEiJ_G0013103.1 mouse_genomes_project 6 93276143 93277140 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001844.1 MGP_CASTEiJ_G0001765.1 mouse_genomes_project 6 1342163 1343100 + TEC TEC MGP_CASTEiJ_T0102442.1 MGP_CASTEiJ_G0039167.1 mouse_genomes_project 6 135634507 135636590 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101798.1 MGP_CASTEiJ_G0038568.1 mouse_genomes_project 6 56243840 56244057 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0077342.1 MGP_CASTEiJ_G0029710.1 mouse_genomes_project 6 38419365 38420307 - MGP_CASTEiJ_P0077342 Olfr461 protein_coding protein_coding MGP_CASTEiJ_T0014750.1 MGP_CASTEiJ_G0012913.1 mouse_genomes_project 6 21309817 21311839 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014837.1 MGP_CASTEiJ_G0013000.1 mouse_genomes_project 6 60538472 60538896 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001954.1 MGP_CASTEiJ_G0001875.1 mouse_genomes_project 6 77331932 77336781 - TEC TEC MGP_CASTEiJ_T0011311.1 MGP_CASTEiJ_G0009499.1 mouse_genomes_project 6 50523789 50523891 + Gm27868 misc_RNA misc_RNA MGP_CASTEiJ_T0014980.1 MGP_CASTEiJ_G0013143.1 mouse_genomes_project 6 110719022 110719468 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080676.1 MGP_CASTEiJ_G0030435.1 mouse_genomes_project 6 132152293 132177956 - MGP_CASTEiJ_P0080676 Klrc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080677.1 MGP_CASTEiJ_G0030435.1 mouse_genomes_project 6 132152293 132177956 - MGP_CASTEiJ_P0080677 Klrc3 protein_coding protein_coding MGP_CASTEiJ_T0080678.1 MGP_CASTEiJ_G0030435.1 mouse_genomes_project 6 132152314 132177956 - MGP_CASTEiJ_P0080678 Klrc3 protein_coding protein_coding MGP_CASTEiJ_T0102415.1 MGP_CASTEiJ_G0039140.1 mouse_genomes_project 6 90661179 90661417 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008444.1 MGP_CASTEiJ_G0006840.1 mouse_genomes_project 6 88153415 88169711 - 1810020O05Rik lincRNA lincRNA MGP_CASTEiJ_T0080488.1 MGP_CASTEiJ_G0030390.1 mouse_genomes_project 6 129108310 129149536 - MGP_CASTEiJ_P0080488 Dyrk4 protein_coding protein_coding MGP_CASTEiJ_T0080489.1 MGP_CASTEiJ_G0030390.1 mouse_genomes_project 6 129108483 129117664 - MGP_CASTEiJ_P0080489 Dyrk4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080490.1 MGP_CASTEiJ_G0030390.1 mouse_genomes_project 6 129108489 129135123 - Dyrk4 protein_coding processed_transcript MGP_CASTEiJ_T0015013.1 MGP_CASTEiJ_G0013176.1 mouse_genomes_project 6 123502659 123503395 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014779.1 MGP_CASTEiJ_G0012942.1 mouse_genomes_project 6 39196631 39197193 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079842.1 MGP_CASTEiJ_G0030266.1 mouse_genomes_project 6 119455547 119465833 + Zfp239 protein_coding processed_transcript MGP_CASTEiJ_T0079843.1 MGP_CASTEiJ_G0030266.1 mouse_genomes_project 6 119456767 119465794 + Zfp239 protein_coding processed_transcript MGP_CASTEiJ_T0079844.1 MGP_CASTEiJ_G0030266.1 mouse_genomes_project 6 119456767 119468395 + MGP_CASTEiJ_P0079844 Zfp239 protein_coding protein_coding MGP_CASTEiJ_T0079845.1 MGP_CASTEiJ_G0030266.1 mouse_genomes_project 6 119456767 119467831 + MGP_CASTEiJ_P0079845 Zfp239 protein_coding protein_coding MGP_CASTEiJ_T0079846.1 MGP_CASTEiJ_G0030266.1 mouse_genomes_project 6 119456774 119464973 + Zfp239 protein_coding retained_intron MGP_CASTEiJ_T0079847.1 MGP_CASTEiJ_G0030266.1 mouse_genomes_project 6 119456774 119465522 + Zfp239 protein_coding processed_transcript MGP_CASTEiJ_T0079848.1 MGP_CASTEiJ_G0030266.1 mouse_genomes_project 6 119456774 119465789 + Zfp239 protein_coding processed_transcript MGP_CASTEiJ_T0011321.1 MGP_CASTEiJ_G0009509.1 mouse_genomes_project 6 50632099 50632461 + Gm27383 misc_RNA misc_RNA MGP_CASTEiJ_T0077542.1 MGP_CASTEiJ_G0029785.1 mouse_genomes_project 6 45931879 45964117 + MGP_CASTEiJ_P0077542 Zfp282 protein_coding protein_coding MGP_CASTEiJ_T0077543.1 MGP_CASTEiJ_G0029785.1 mouse_genomes_project 6 45932333 45947724 + Zfp282 protein_coding retained_intron MGP_CASTEiJ_T0077678.1 MGP_CASTEiJ_G0029816.1 mouse_genomes_project 6 47125697 47130621 + MGP_CASTEiJ_P0077678 Svs1 protein_coding protein_coding MGP_CASTEiJ_T0001986.1 MGP_CASTEiJ_G0001907.1 mouse_genomes_project 6 87589508 87591611 - TEC TEC MGP_CASTEiJ_T0079879.1 MGP_CASTEiJ_G0030274.1 mouse_genomes_project 6 120108550 120128611 - MGP_CASTEiJ_P0079879 Zfp9 protein_coding protein_coding MGP_CASTEiJ_T0079880.1 MGP_CASTEiJ_G0030274.1 mouse_genomes_project 6 120114241 120115932 - Zfp9 protein_coding retained_intron MGP_CASTEiJ_T0004805.1 MGP_CASTEiJ_G0004135.1 mouse_genomes_project 6 38068583 38074508 - Gm26807 antisense antisense MGP_CASTEiJ_T0014928.1 MGP_CASTEiJ_G0013091.1 mouse_genomes_project 6 86295478 86296177 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077458.1 MGP_CASTEiJ_G0029759.1 mouse_genomes_project 6 40546510 40597575 - MGP_CASTEiJ_P0077458 Tcaf1 protein_coding protein_coding MGP_CASTEiJ_T0077459.1 MGP_CASTEiJ_G0029759.1 mouse_genomes_project 6 40548447 40580046 - MGP_CASTEiJ_P0077459 Tcaf1 protein_coding protein_coding MGP_CASTEiJ_T0077460.1 MGP_CASTEiJ_G0029759.1 mouse_genomes_project 6 40549536 40580018 - MGP_CASTEiJ_P0077460 Tcaf1 protein_coding protein_coding MGP_CASTEiJ_T0077461.1 MGP_CASTEiJ_G0029759.1 mouse_genomes_project 6 40556519 40579962 - Tcaf1 protein_coding retained_intron MGP_CASTEiJ_T0077462.1 MGP_CASTEiJ_G0029759.1 mouse_genomes_project 6 40558848 40597558 - Tcaf1 protein_coding processed_transcript MGP_CASTEiJ_T0077463.1 MGP_CASTEiJ_G0029759.1 mouse_genomes_project 6 40572184 40597558 - Tcaf1 protein_coding retained_intron MGP_CASTEiJ_T0077464.1 MGP_CASTEiJ_G0029759.1 mouse_genomes_project 6 40577244 40579967 - Tcaf1 protein_coding processed_transcript MGP_CASTEiJ_T0077465.1 MGP_CASTEiJ_G0029759.1 mouse_genomes_project 6 40596583 40597559 - Tcaf1 protein_coding processed_transcript MGP_CASTEiJ_T0004950.1 MGP_CASTEiJ_G0004234.1 mouse_genomes_project 6 129347044 129349123 + antisense antisense MGP_CASTEiJ_T0101649.1 MGP_CASTEiJ_G0038492.1 mouse_genomes_project 6 148400153 148414662 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101650.1 MGP_CASTEiJ_G0038492.1 mouse_genomes_project 6 148400154 148404797 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101651.1 MGP_CASTEiJ_G0038492.1 mouse_genomes_project 6 148402866 148404606 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101652.1 MGP_CASTEiJ_G0038492.1 mouse_genomes_project 6 148403982 148404723 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0014765.1 MGP_CASTEiJ_G0012928.1 mouse_genomes_project 6 32348513 32348710 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101211.1 MGP_CASTEiJ_G0038124.1 mouse_genomes_project 6 126390526 126390658 - Gm25311 snoRNA snoRNA MGP_CASTEiJ_T0004813.1 MGP_CASTEiJ_G0004142.1 mouse_genomes_project 6 47125452 47138477 - 4930563H07Rik antisense antisense MGP_CASTEiJ_T0078669.1 MGP_CASTEiJ_G0030039.1 mouse_genomes_project 6 85623042 85665629 - MGP_CASTEiJ_P0078669 protein_coding protein_coding MGP_CASTEiJ_T0078670.1 MGP_CASTEiJ_G0030039.1 mouse_genomes_project 6 85623047 85665699 - MGP_CASTEiJ_P0078670 protein_coding protein_coding MGP_CASTEiJ_T0078671.1 MGP_CASTEiJ_G0030039.1 mouse_genomes_project 6 85625708 85629718 - protein_coding processed_transcript MGP_CASTEiJ_T0101172.1 MGP_CASTEiJ_G0038085.1 mouse_genomes_project 6 55119069 55119201 - Gm24709 snoRNA snoRNA MGP_CASTEiJ_T0079240.1 MGP_CASTEiJ_G0030154.1 mouse_genomes_project 6 96211143 96211241 + MGP_CASTEiJ_P0079240 Gm10234 protein_coding protein_coding MGP_CASTEiJ_T0014798.1 MGP_CASTEiJ_G0012961.1 mouse_genomes_project 6 46940597 46943234 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008437.1 MGP_CASTEiJ_G0006834.1 mouse_genomes_project 6 86377776 86382725 + 4930553P18Rik lincRNA lincRNA MGP_CASTEiJ_T0004848.1 MGP_CASTEiJ_G0004168.1 mouse_genomes_project 6 82110993 82113119 - Gm15864 antisense antisense MGP_CASTEiJ_T0080723.1 MGP_CASTEiJ_G0030460.1 mouse_genomes_project 6 135206888 135207932 + MGP_CASTEiJ_P0080723 Tas2r102 protein_coding protein_coding MGP_CASTEiJ_T0102439.1 MGP_CASTEiJ_G0039164.1 mouse_genomes_project 6 135426491 135427394 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0014855.1 MGP_CASTEiJ_G0013018.1 mouse_genomes_project 6 64719468 64721081 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076333.1 MGP_CASTEiJ_G0029520.1 mouse_genomes_project 6 682997 689172 - MGP_CASTEiJ_P0076333 Tfpi2 protein_coding protein_coding MGP_CASTEiJ_T0076334.1 MGP_CASTEiJ_G0029520.1 mouse_genomes_project 6 683786 713966 - MGP_CASTEiJ_P0076334 Tfpi2 protein_coding protein_coding MGP_CASTEiJ_T0076335.1 MGP_CASTEiJ_G0029520.1 mouse_genomes_project 6 685926 714027 - MGP_CASTEiJ_P0076335 Tfpi2 protein_coding protein_coding MGP_CASTEiJ_T0008383.1 MGP_CASTEiJ_G0006791.1 mouse_genomes_project 6 49659236 49673481 - Gm26677 lincRNA lincRNA MGP_CASTEiJ_T0080948.1 MGP_CASTEiJ_G0030515.1 mouse_genomes_project 6 142232069 142241030 - MGP_CASTEiJ_P0080948 Rergl protein_coding protein_coding MGP_CASTEiJ_T0077891.1 MGP_CASTEiJ_G0029864.1 mouse_genomes_project 6 53494935 53505320 - MGP_CASTEiJ_P0077891 Ggct protein_coding protein_coding MGP_CASTEiJ_T0077892.1 MGP_CASTEiJ_G0029864.1 mouse_genomes_project 6 53497999 53505077 - Ggct protein_coding processed_transcript MGP_CASTEiJ_T0077893.1 MGP_CASTEiJ_G0029864.1 mouse_genomes_project 6 53498283 53505231 - MGP_CASTEiJ_P0077893 Ggct protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077894.1 MGP_CASTEiJ_G0029864.1 mouse_genomes_project 6 53498307 53505233 - MGP_CASTEiJ_P0077894 Ggct protein_coding protein_coding MGP_CASTEiJ_T0077895.1 MGP_CASTEiJ_G0029864.1 mouse_genomes_project 6 53498832 53505233 - Ggct protein_coding retained_intron MGP_CASTEiJ_T0077896.1 MGP_CASTEiJ_G0029864.1 mouse_genomes_project 6 53501223 53504994 - Ggct protein_coding retained_intron MGP_CASTEiJ_T0078660.1 MGP_CASTEiJ_G0030038.1 mouse_genomes_project 6 85498836 85621503 - MGP_CASTEiJ_P0078660 Sfxn5 protein_coding protein_coding MGP_CASTEiJ_T0078661.1 MGP_CASTEiJ_G0030038.1 mouse_genomes_project 6 85515066 85550571 - Sfxn5 protein_coding processed_transcript MGP_CASTEiJ_T0078662.1 MGP_CASTEiJ_G0030038.1 mouse_genomes_project 6 85520115 85621500 - MGP_CASTEiJ_P0078662 Sfxn5 protein_coding protein_coding MGP_CASTEiJ_T0078663.1 MGP_CASTEiJ_G0030038.1 mouse_genomes_project 6 85554353 85621487 - Sfxn5 protein_coding retained_intron MGP_CASTEiJ_T0078664.1 MGP_CASTEiJ_G0030038.1 mouse_genomes_project 6 85582332 85621500 - Sfxn5 protein_coding processed_transcript MGP_CASTEiJ_T0078665.1 MGP_CASTEiJ_G0030038.1 mouse_genomes_project 6 85586204 85621503 - MGP_CASTEiJ_P0078665 Sfxn5 protein_coding protein_coding MGP_CASTEiJ_T0078666.1 MGP_CASTEiJ_G0030038.1 mouse_genomes_project 6 85586206 85608496 - Sfxn5 protein_coding processed_transcript MGP_CASTEiJ_T0078667.1 MGP_CASTEiJ_G0030038.1 mouse_genomes_project 6 85606969 85620831 - MGP_CASTEiJ_P0078667 Sfxn5 protein_coding protein_coding MGP_CASTEiJ_T0078668.1 MGP_CASTEiJ_G0030038.1 mouse_genomes_project 6 85617034 85621503 - Sfxn5 protein_coding retained_intron MGP_CASTEiJ_T0076985.1 MGP_CASTEiJ_G0029642.1 mouse_genomes_project 6 28123885 28144723 + MGP_CASTEiJ_P0076985 Mest protein_coding protein_coding MGP_CASTEiJ_T0076986.1 MGP_CASTEiJ_G0029642.1 mouse_genomes_project 6 28123885 28133111 + MGP_CASTEiJ_P0076986 Mest protein_coding protein_coding MGP_CASTEiJ_T0076987.1 MGP_CASTEiJ_G0029642.1 mouse_genomes_project 6 28132364 28144727 + MGP_CASTEiJ_P0076987 Mest protein_coding protein_coding MGP_CASTEiJ_T0076988.1 MGP_CASTEiJ_G0029642.1 mouse_genomes_project 6 28133850 28144985 + MGP_CASTEiJ_P0076988 Mest protein_coding protein_coding MGP_CASTEiJ_T0076989.1 MGP_CASTEiJ_G0029642.1 mouse_genomes_project 6 28133902 28152048 + MGP_CASTEiJ_P0076989 Mest protein_coding protein_coding MGP_CASTEiJ_T0076990.1 MGP_CASTEiJ_G0029642.1 mouse_genomes_project 6 28138520 28152048 + MGP_CASTEiJ_P0076990 Mest protein_coding protein_coding MGP_CASTEiJ_T0076991.1 MGP_CASTEiJ_G0029642.1 mouse_genomes_project 6 28138523 28152051 + MGP_CASTEiJ_P0076991 Mest protein_coding protein_coding MGP_CASTEiJ_T0076992.1 MGP_CASTEiJ_G0029642.1 mouse_genomes_project 6 28138525 28139349 + Mest protein_coding processed_transcript MGP_CASTEiJ_T0076993.1 MGP_CASTEiJ_G0029642.1 mouse_genomes_project 6 28142922 28145291 + Mest protein_coding retained_intron MGP_CASTEiJ_T0076994.1 MGP_CASTEiJ_G0029642.1 mouse_genomes_project 6 28144218 28145289 + Mest protein_coding retained_intron MGP_CASTEiJ_T0076995.1 MGP_CASTEiJ_G0029642.1 mouse_genomes_project 6 28144231 28145298 + Mest protein_coding retained_intron MGP_CASTEiJ_T0078400.1 MGP_CASTEiJ_G0029990.1 mouse_genomes_project 6 82024772 82032724 - MGP_CASTEiJ_P0078400 Mrpl19 protein_coding protein_coding MGP_CASTEiJ_T0078401.1 MGP_CASTEiJ_G0029990.1 mouse_genomes_project 6 82028716 82029584 - Mrpl19 protein_coding retained_intron MGP_CASTEiJ_T0078402.1 MGP_CASTEiJ_G0029990.1 mouse_genomes_project 6 82029147 82032373 - Mrpl19 protein_coding processed_transcript MGP_CASTEiJ_T0079069.1 MGP_CASTEiJ_G0030124.1 mouse_genomes_project 6 91021020 91048141 - MGP_CASTEiJ_P0079069 Cfap100 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079070.1 MGP_CASTEiJ_G0030124.1 mouse_genomes_project 6 91021277 91047786 - MGP_CASTEiJ_P0079070 Cfap100 protein_coding protein_coding MGP_CASTEiJ_T0079071.1 MGP_CASTEiJ_G0030124.1 mouse_genomes_project 6 91021278 91033281 - MGP_CASTEiJ_P0079071 Cfap100 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079072.1 MGP_CASTEiJ_G0030124.1 mouse_genomes_project 6 91021279 91047767 - MGP_CASTEiJ_P0079072 Cfap100 protein_coding protein_coding MGP_CASTEiJ_T0079073.1 MGP_CASTEiJ_G0030124.1 mouse_genomes_project 6 91038404 91048151 - MGP_CASTEiJ_P0079073 Cfap100 protein_coding protein_coding MGP_CASTEiJ_T0079074.1 MGP_CASTEiJ_G0030124.1 mouse_genomes_project 6 91038617 91047789 - MGP_CASTEiJ_P0079074 Cfap100 protein_coding protein_coding MGP_CASTEiJ_T0079075.1 MGP_CASTEiJ_G0030124.1 mouse_genomes_project 6 91045836 91047749 - MGP_CASTEiJ_P0079075 Cfap100 protein_coding protein_coding MGP_CASTEiJ_T0079076.1 MGP_CASTEiJ_G0030124.1 mouse_genomes_project 6 91047249 91047939 - Cfap100 protein_coding processed_transcript MGP_CASTEiJ_T0002029.1 MGP_CASTEiJ_G0001950.1 mouse_genomes_project 6 101291809 101294340 - TEC TEC MGP_CASTEiJ_T0004978.1 MGP_CASTEiJ_G0004258.1 mouse_genomes_project 6 146924481 146926351 + Sox5os1 antisense antisense MGP_CASTEiJ_T0015016.1 MGP_CASTEiJ_G0013179.1 mouse_genomes_project 6 123821789 123821921 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004807.1 MGP_CASTEiJ_G0004137.1 mouse_genomes_project 6 40192175 40213261 - Gm44284 antisense antisense MGP_CASTEiJ_T0099943.1 MGP_CASTEiJ_G0036856.1 mouse_genomes_project 6 27303478 27303585 + Gm24536 snRNA snRNA MGP_CASTEiJ_T0078483.1 MGP_CASTEiJ_G0030009.1 mouse_genomes_project 6 83247922 83250162 - MGP_CASTEiJ_P0078483 Wbp1 protein_coding protein_coding MGP_CASTEiJ_T0078484.1 MGP_CASTEiJ_G0030009.1 mouse_genomes_project 6 83247928 83250450 - MGP_CASTEiJ_P0078484 Wbp1 protein_coding protein_coding MGP_CASTEiJ_T0078485.1 MGP_CASTEiJ_G0030009.1 mouse_genomes_project 6 83247929 83250450 - Wbp1 protein_coding retained_intron MGP_CASTEiJ_T0078486.1 MGP_CASTEiJ_G0030009.1 mouse_genomes_project 6 83248191 83250278 - MGP_CASTEiJ_P0078486 Wbp1 protein_coding protein_coding MGP_CASTEiJ_T0078487.1 MGP_CASTEiJ_G0030009.1 mouse_genomes_project 6 83248434 83249093 - MGP_CASTEiJ_P0078487 Wbp1 protein_coding protein_coding MGP_CASTEiJ_T0078488.1 MGP_CASTEiJ_G0030009.1 mouse_genomes_project 6 83248519 83249768 - Wbp1 protein_coding retained_intron MGP_CASTEiJ_T0078489.1 MGP_CASTEiJ_G0030009.1 mouse_genomes_project 6 83248524 83250150 - Wbp1 protein_coding processed_transcript MGP_CASTEiJ_T0078490.1 MGP_CASTEiJ_G0030009.1 mouse_genomes_project 6 83249443 83250165 - MGP_CASTEiJ_P0078490 Wbp1 protein_coding protein_coding MGP_CASTEiJ_T0000295.1 MGP_CASTEiJ_G0000244.1 mouse_genomes_project 6 69500696 69501006 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0010444.1 MGP_CASTEiJ_G0008632.1 mouse_genomes_project 6 436446 436531 - Mir653 miRNA miRNA MGP_CASTEiJ_T0078720.1 MGP_CASTEiJ_G0030055.1 mouse_genomes_project 6 86271146 86277349 + Tprkb protein_coding processed_transcript MGP_CASTEiJ_T0078721.1 MGP_CASTEiJ_G0030055.1 mouse_genomes_project 6 86271158 86291739 + MGP_CASTEiJ_P0078721 Tprkb protein_coding protein_coding MGP_CASTEiJ_T0078722.1 MGP_CASTEiJ_G0030055.1 mouse_genomes_project 6 86271172 86277735 + Tprkb protein_coding processed_transcript MGP_CASTEiJ_T0078723.1 MGP_CASTEiJ_G0030055.1 mouse_genomes_project 6 86271188 86287183 + Tprkb protein_coding processed_transcript MGP_CASTEiJ_T0078724.1 MGP_CASTEiJ_G0030055.1 mouse_genomes_project 6 86276205 86278169 + Tprkb protein_coding retained_intron MGP_CASTEiJ_T0078725.1 MGP_CASTEiJ_G0030055.1 mouse_genomes_project 6 86277842 86290414 + MGP_CASTEiJ_P0078725 Tprkb protein_coding protein_coding MGP_CASTEiJ_T0078726.1 MGP_CASTEiJ_G0030055.1 mouse_genomes_project 6 86277861 86293090 + MGP_CASTEiJ_P0078726 Tprkb protein_coding protein_coding MGP_CASTEiJ_T0078727.1 MGP_CASTEiJ_G0030055.1 mouse_genomes_project 6 86277861 86290901 + MGP_CASTEiJ_P0078727 Tprkb protein_coding protein_coding MGP_CASTEiJ_T0078728.1 MGP_CASTEiJ_G0030055.1 mouse_genomes_project 6 86277870 86293088 + MGP_CASTEiJ_P0078728 Tprkb protein_coding protein_coding MGP_CASTEiJ_T0078729.1 MGP_CASTEiJ_G0030055.1 mouse_genomes_project 6 86277870 86291326 + MGP_CASTEiJ_P0078729 Tprkb protein_coding protein_coding MGP_CASTEiJ_T0078730.1 MGP_CASTEiJ_G0030055.1 mouse_genomes_project 6 86277878 86291831 + MGP_CASTEiJ_P0078730 Tprkb protein_coding protein_coding MGP_CASTEiJ_T0078731.1 MGP_CASTEiJ_G0030055.1 mouse_genomes_project 6 86277879 86287422 + Tprkb protein_coding processed_transcript MGP_CASTEiJ_T0078732.1 MGP_CASTEiJ_G0030055.1 mouse_genomes_project 6 86277880 86290697 + MGP_CASTEiJ_P0078732 Tprkb protein_coding protein_coding MGP_CASTEiJ_T0078733.1 MGP_CASTEiJ_G0030055.1 mouse_genomes_project 6 86277921 86290746 + MGP_CASTEiJ_P0078733 Tprkb protein_coding protein_coding MGP_CASTEiJ_T0014715.1 MGP_CASTEiJ_G0012878.1 mouse_genomes_project 6 4440475 4441112 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000296.1 MGP_CASTEiJ_G0000245.1 mouse_genomes_project 6 69513347 69513916 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0001996.1 MGP_CASTEiJ_G0001917.1 mouse_genomes_project 6 88466860 88470420 + TEC TEC MGP_CASTEiJ_T0099955.1 MGP_CASTEiJ_G0036868.1 mouse_genomes_project 6 65204835 65204941 - Gm23543 snRNA snRNA MGP_CASTEiJ_T0077982.1 MGP_CASTEiJ_G0029891.1 mouse_genomes_project 6 56022470 56027319 - MGP_CASTEiJ_P0077982 Vmn1r27 protein_coding protein_coding MGP_CASTEiJ_T0014931.1 MGP_CASTEiJ_G0013094.1 mouse_genomes_project 6 88437750 88438163 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001946.1 MGP_CASTEiJ_G0001867.1 mouse_genomes_project 6 72324140 72327048 + TEC TEC MGP_CASTEiJ_T0004970.1 MGP_CASTEiJ_G0004252.1 mouse_genomes_project 6 141071594 141077411 + A830011K09Rik antisense antisense MGP_CASTEiJ_T0004971.1 MGP_CASTEiJ_G0004252.1 mouse_genomes_project 6 141071689 141076133 + A830011K09Rik antisense antisense MGP_CASTEiJ_T0004972.1 MGP_CASTEiJ_G0004252.1 mouse_genomes_project 6 141071760 141078030 + A830011K09Rik antisense antisense MGP_CASTEiJ_T0080788.1 MGP_CASTEiJ_G0030484.1 mouse_genomes_project 6 137344522 137349683 + MGP_CASTEiJ_P0080788 Apold1 protein_coding protein_coding MGP_CASTEiJ_T0077361.1 MGP_CASTEiJ_G0029720.1 mouse_genomes_project 6 38858205 38862578 + MGP_CASTEiJ_P0077361 1810009J06Rik protein_coding protein_coding MGP_CASTEiJ_T0014897.1 MGP_CASTEiJ_G0013060.1 mouse_genomes_project 6 74953301 74954283 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080835.1 MGP_CASTEiJ_G0030495.1 mouse_genomes_project 6 139014732 139114410 + MGP_CASTEiJ_P0080835 Atf7ip protein_coding protein_coding MGP_CASTEiJ_T0080836.1 MGP_CASTEiJ_G0030495.1 mouse_genomes_project 6 139014736 139061313 + MGP_CASTEiJ_P0080836 Atf7ip protein_coding protein_coding MGP_CASTEiJ_T0080837.1 MGP_CASTEiJ_G0030495.1 mouse_genomes_project 6 139014771 139086176 + MGP_CASTEiJ_P0080837 Atf7ip protein_coding protein_coding MGP_CASTEiJ_T0080838.1 MGP_CASTEiJ_G0030495.1 mouse_genomes_project 6 139014776 139020330 + Atf7ip protein_coding retained_intron MGP_CASTEiJ_T0080839.1 MGP_CASTEiJ_G0030495.1 mouse_genomes_project 6 139014827 139110682 + MGP_CASTEiJ_P0080839 Atf7ip protein_coding unknown_likely_coding MGP_CASTEiJ_T0080840.1 MGP_CASTEiJ_G0030495.1 mouse_genomes_project 6 139028794 139091013 + MGP_CASTEiJ_P0080840 Atf7ip protein_coding protein_coding MGP_CASTEiJ_T0080841.1 MGP_CASTEiJ_G0030495.1 mouse_genomes_project 6 139048743 139057451 + MGP_CASTEiJ_P0080841 Atf7ip protein_coding protein_coding MGP_CASTEiJ_T0080842.1 MGP_CASTEiJ_G0030495.1 mouse_genomes_project 6 139051530 139057634 + MGP_CASTEiJ_P0080842 Atf7ip protein_coding protein_coding MGP_CASTEiJ_T0080843.1 MGP_CASTEiJ_G0030495.1 mouse_genomes_project 6 139051548 139052740 + Atf7ip protein_coding retained_intron MGP_CASTEiJ_T0080844.1 MGP_CASTEiJ_G0030495.1 mouse_genomes_project 6 139058383 139072852 + MGP_CASTEiJ_P0080844 Atf7ip protein_coding protein_coding MGP_CASTEiJ_T0080845.1 MGP_CASTEiJ_G0030495.1 mouse_genomes_project 6 139079008 139086123 + Atf7ip protein_coding retained_intron MGP_CASTEiJ_T0080846.1 MGP_CASTEiJ_G0030495.1 mouse_genomes_project 6 139099152 139111864 + Atf7ip protein_coding retained_intron MGP_CASTEiJ_T0002116.1 MGP_CASTEiJ_G0002036.1 mouse_genomes_project 6 151453845 151458995 - TEC TEC MGP_CASTEiJ_T0079415.1 MGP_CASTEiJ_G0030189.1 mouse_genomes_project 6 110124111 110172985 + MGP_CASTEiJ_P0079415 Arl8b protein_coding protein_coding MGP_CASTEiJ_T0079416.1 MGP_CASTEiJ_G0030189.1 mouse_genomes_project 6 110124231 110166185 + MGP_CASTEiJ_P0079416 Arl8b protein_coding unknown_likely_coding MGP_CASTEiJ_T0079417.1 MGP_CASTEiJ_G0030189.1 mouse_genomes_project 6 110136777 110169490 + MGP_CASTEiJ_P0079417 Arl8b protein_coding protein_coding MGP_CASTEiJ_T0015074.1 MGP_CASTEiJ_G0013237.1 mouse_genomes_project 6 137549681 137550576 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077684.1 MGP_CASTEiJ_G0029818.1 mouse_genomes_project 6 47210369 47225024 + MGP_CASTEiJ_P0077684 Malsu1 protein_coding protein_coding MGP_CASTEiJ_T0077685.1 MGP_CASTEiJ_G0029818.1 mouse_genomes_project 6 47210422 47225024 + MGP_CASTEiJ_P0077685 Malsu1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077686.1 MGP_CASTEiJ_G0029818.1 mouse_genomes_project 6 47210466 47218409 + Malsu1 protein_coding processed_transcript MGP_CASTEiJ_T0077687.1 MGP_CASTEiJ_G0029818.1 mouse_genomes_project 6 47210648 47221807 + Malsu1 protein_coding processed_transcript MGP_CASTEiJ_T0077688.1 MGP_CASTEiJ_G0029818.1 mouse_genomes_project 6 47220857 47222951 + Malsu1 protein_coding retained_intron MGP_CASTEiJ_T0081170.1 MGP_CASTEiJ_G0030556.1 mouse_genomes_project 6 148974371 149007527 + MGP_CASTEiJ_P0081170 Sspn protein_coding protein_coding MGP_CASTEiJ_T0081171.1 MGP_CASTEiJ_G0030556.1 mouse_genomes_project 6 148976567 149007527 + MGP_CASTEiJ_P0081171 Sspn protein_coding protein_coding MGP_CASTEiJ_T0081172.1 MGP_CASTEiJ_G0030556.1 mouse_genomes_project 6 148995814 149007527 + MGP_CASTEiJ_P0081172 Sspn protein_coding protein_coding MGP_CASTEiJ_T0011318.1 MGP_CASTEiJ_G0009506.1 mouse_genomes_project 6 50615521 50615698 + Gm27543 misc_RNA misc_RNA MGP_CASTEiJ_T0078430.1 MGP_CASTEiJ_G0029998.1 mouse_genomes_project 6 83152234 83155619 + Loxl3 protein_coding processed_transcript MGP_CASTEiJ_T0078431.1 MGP_CASTEiJ_G0029998.1 mouse_genomes_project 6 83152234 83172459 + MGP_CASTEiJ_P0078431 Loxl3 protein_coding protein_coding MGP_CASTEiJ_T0078432.1 MGP_CASTEiJ_G0029998.1 mouse_genomes_project 6 83152234 83172459 + MGP_CASTEiJ_P0078432 Loxl3 protein_coding protein_coding MGP_CASTEiJ_T0078433.1 MGP_CASTEiJ_G0029998.1 mouse_genomes_project 6 83156481 83163103 + Loxl3 protein_coding processed_transcript MGP_CASTEiJ_T0078434.1 MGP_CASTEiJ_G0029998.1 mouse_genomes_project 6 83168223 83169024 + Loxl3 protein_coding retained_intron MGP_CASTEiJ_T0077975.1 MGP_CASTEiJ_G0029884.1 mouse_genomes_project 6 55574265 55574890 - MGP_CASTEiJ_P0077975 protein_coding protein_coding MGP_CASTEiJ_T0079825.1 MGP_CASTEiJ_G0030263.1 mouse_genomes_project 6 118272518 118295224 - MGP_CASTEiJ_P0079825 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079826.1 MGP_CASTEiJ_G0030263.1 mouse_genomes_project 6 118272741 118295376 - MGP_CASTEiJ_P0079826 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0014744.1 MGP_CASTEiJ_G0012907.1 mouse_genomes_project 6 18056385 18056941 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002491.1 MGP_CASTEiJ_G0002401.1 mouse_genomes_project 6 39369609 39369655 + MGP_CASTEiJ_P0002491 Trbj1-7 TR_J_gene TR_J_gene MGP_CASTEiJ_T0002492.1 MGP_CASTEiJ_G0002401.1 mouse_genomes_project 6 39369609 39369654 + Trbj1-7 TR_J_gene processed_transcript MGP_CASTEiJ_T0014842.1 MGP_CASTEiJ_G0013005.1 mouse_genomes_project 6 62042566 62043092 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000170.1 MGP_CASTEiJ_G0000129.1 mouse_genomes_project 6 68276062 68278449 - MGP_CASTEiJ_P0000170 Igkv10-96 IG_V_gene IG_V_gene MGP_CASTEiJ_T0014942.1 MGP_CASTEiJ_G0013105.1 mouse_genomes_project 6 95165653 95166417 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010485.1 MGP_CASTEiJ_G0008673.1 mouse_genomes_project 6 91300482 91300645 - Gm24816 miRNA miRNA MGP_CASTEiJ_T0076402.1 MGP_CASTEiJ_G0029532.1 mouse_genomes_project 6 2165311 2220359 + MGP_CASTEiJ_P0076402 Asb4 protein_coding protein_coding MGP_CASTEiJ_T0076403.1 MGP_CASTEiJ_G0029532.1 mouse_genomes_project 6 2172253 2185826 + MGP_CASTEiJ_P0076403 Asb4 protein_coding protein_coding MGP_CASTEiJ_T0076404.1 MGP_CASTEiJ_G0029532.1 mouse_genomes_project 6 2172342 2221656 + MGP_CASTEiJ_P0076404 Asb4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014812.1 MGP_CASTEiJ_G0012975.1 mouse_genomes_project 6 48810358 48810730 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001930.1 MGP_CASTEiJ_G0001851.1 mouse_genomes_project 6 59913685 59917715 - TEC TEC MGP_CASTEiJ_T0001850.1 MGP_CASTEiJ_G0001771.1 mouse_genomes_project 6 2070710 2072531 + TEC TEC MGP_CASTEiJ_T0080197.1 MGP_CASTEiJ_G0030335.1 mouse_genomes_project 6 126390885 126419424 + MGP_CASTEiJ_P0080197 Cd163 protein_coding protein_coding MGP_CASTEiJ_T0080198.1 MGP_CASTEiJ_G0030335.1 mouse_genomes_project 6 126390929 126419424 + MGP_CASTEiJ_P0080198 Cd163 protein_coding protein_coding MGP_CASTEiJ_T0080199.1 MGP_CASTEiJ_G0030335.1 mouse_genomes_project 6 126409357 126419416 + Cd163 protein_coding retained_intron MGP_CASTEiJ_T0014709.1 MGP_CASTEiJ_G0012872.1 mouse_genomes_project 6 3163682 3163907 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008299.1 MGP_CASTEiJ_G0006735.1 mouse_genomes_project 6 9390807 9429188 + lincRNA lincRNA MGP_CASTEiJ_T0078797.1 MGP_CASTEiJ_G0030065.1 mouse_genomes_project 6 86850495 86885902 + MGP_CASTEiJ_P0078797 C87436 protein_coding protein_coding MGP_CASTEiJ_T0078798.1 MGP_CASTEiJ_G0030065.1 mouse_genomes_project 6 86850510 86857651 + MGP_CASTEiJ_P0078798 C87436 protein_coding protein_coding MGP_CASTEiJ_T0078799.1 MGP_CASTEiJ_G0030065.1 mouse_genomes_project 6 86850799 86885902 + MGP_CASTEiJ_P0078799 C87436 protein_coding protein_coding MGP_CASTEiJ_T0078800.1 MGP_CASTEiJ_G0030065.1 mouse_genomes_project 6 86850799 86885902 + MGP_CASTEiJ_P0078800 C87436 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078801.1 MGP_CASTEiJ_G0030065.1 mouse_genomes_project 6 86850815 86851596 + C87436 protein_coding processed_transcript MGP_CASTEiJ_T0078802.1 MGP_CASTEiJ_G0030065.1 mouse_genomes_project 6 86850834 86885902 + MGP_CASTEiJ_P0078802 C87436 protein_coding protein_coding MGP_CASTEiJ_T0078803.1 MGP_CASTEiJ_G0030065.1 mouse_genomes_project 6 86855813 86889000 + MGP_CASTEiJ_P0078803 C87436 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078804.1 MGP_CASTEiJ_G0030065.1 mouse_genomes_project 6 86879510 86885461 + C87436 protein_coding processed_transcript MGP_CASTEiJ_T0004986.1 MGP_CASTEiJ_G0004265.1 mouse_genomes_project 6 148173993 148179350 + Gm15543 antisense antisense MGP_CASTEiJ_T0014766.1 MGP_CASTEiJ_G0012929.1 mouse_genomes_project 6 32358069 32358765 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080557.1 MGP_CASTEiJ_G0030404.1 mouse_genomes_project 6 130743784 130749608 - MGP_CASTEiJ_P0080557 protein_coding protein_coding MGP_CASTEiJ_T0080558.1 MGP_CASTEiJ_G0030404.1 mouse_genomes_project 6 130744144 130749664 - MGP_CASTEiJ_P0080558 protein_coding protein_coding MGP_CASTEiJ_T0080559.1 MGP_CASTEiJ_G0030404.1 mouse_genomes_project 6 130744149 130749664 - MGP_CASTEiJ_P0080559 protein_coding protein_coding MGP_CASTEiJ_T0080560.1 MGP_CASTEiJ_G0030404.1 mouse_genomes_project 6 130744755 130749375 - MGP_CASTEiJ_P0080560 protein_coding protein_coding MGP_CASTEiJ_T0080561.1 MGP_CASTEiJ_G0030404.1 mouse_genomes_project 6 130745996 130749491 - MGP_CASTEiJ_P0080561 protein_coding protein_coding MGP_CASTEiJ_T0080562.1 MGP_CASTEiJ_G0030404.1 mouse_genomes_project 6 130748670 130749707 - protein_coding processed_transcript MGP_CASTEiJ_T0015082.1 MGP_CASTEiJ_G0013245.1 mouse_genomes_project 6 142789414 142790603 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017539.1 MGP_CASTEiJ_G0014956.1 mouse_genomes_project 6 66499494 66558300 + A430010J10Rik processed_transcript lincRNA MGP_CASTEiJ_T0017540.1 MGP_CASTEiJ_G0014956.1 mouse_genomes_project 6 66499498 66500867 + A430010J10Rik processed_transcript retained_intron MGP_CASTEiJ_T0017541.1 MGP_CASTEiJ_G0014956.1 mouse_genomes_project 6 66554750 66557984 + A430010J10Rik processed_transcript retained_intron MGP_CASTEiJ_T0017542.1 MGP_CASTEiJ_G0014956.1 mouse_genomes_project 6 66555021 66555434 + A430010J10Rik processed_transcript pseudogene MGP_CASTEiJ_T0077370.1 MGP_CASTEiJ_G0029728.1 mouse_genomes_project 6 39260777 39262102 - MGP_CASTEiJ_P0077370 protein_coding protein_coding MGP_CASTEiJ_T0008409.1 MGP_CASTEiJ_G0006811.1 mouse_genomes_project 6 66935019 66970389 + lincRNA lincRNA MGP_CASTEiJ_T0098996.1 MGP_CASTEiJ_G0035916.1 mouse_genomes_project 6 100367019 100370938 - Gm20705 sense_intronic sense_intronic MGP_CASTEiJ_T0079869.1 MGP_CASTEiJ_G0030272.1 mouse_genomes_project 6 120030866 120067823 - MGP_CASTEiJ_P0079869 Bms1 protein_coding protein_coding MGP_CASTEiJ_T0079870.1 MGP_CASTEiJ_G0030272.1 mouse_genomes_project 6 120045353 120067753 - Bms1 protein_coding retained_intron MGP_CASTEiJ_T0079871.1 MGP_CASTEiJ_G0030272.1 mouse_genomes_project 6 120062176 120067761 - Bms1 protein_coding processed_transcript MGP_CASTEiJ_T0079906.1 MGP_CASTEiJ_G0030277.1 mouse_genomes_project 6 120870860 120913763 + MGP_CASTEiJ_P0079906 Dcp1b protein_coding protein_coding MGP_CASTEiJ_T0079907.1 MGP_CASTEiJ_G0030277.1 mouse_genomes_project 6 120870895 120912328 + MGP_CASTEiJ_P0079907 Dcp1b protein_coding protein_coding MGP_CASTEiJ_T0079908.1 MGP_CASTEiJ_G0030277.1 mouse_genomes_project 6 120888969 120912349 + Dcp1b protein_coding retained_intron MGP_CASTEiJ_T0079909.1 MGP_CASTEiJ_G0030277.1 mouse_genomes_project 6 120897059 120906972 + Dcp1b protein_coding retained_intron MGP_CASTEiJ_T0079910.1 MGP_CASTEiJ_G0030277.1 mouse_genomes_project 6 120909662 120913761 + Dcp1b protein_coding retained_intron MGP_CASTEiJ_T0080043.1 MGP_CASTEiJ_G0030298.1 mouse_genomes_project 6 122715583 122744386 - MGP_CASTEiJ_P0080043 Bid protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080044.1 MGP_CASTEiJ_G0030298.1 mouse_genomes_project 6 122716511 122744403 - MGP_CASTEiJ_P0080044 Bid protein_coding protein_coding MGP_CASTEiJ_T0080045.1 MGP_CASTEiJ_G0030298.1 mouse_genomes_project 6 122719271 122721212 - Bid protein_coding retained_intron MGP_CASTEiJ_T0080046.1 MGP_CASTEiJ_G0030298.1 mouse_genomes_project 6 122723692 122744348 - MGP_CASTEiJ_P0080046 Bid protein_coding protein_coding MGP_CASTEiJ_T0080047.1 MGP_CASTEiJ_G0030298.1 mouse_genomes_project 6 122732605 122744353 - Bid protein_coding processed_transcript MGP_CASTEiJ_T0080529.1 MGP_CASTEiJ_G0030398.1 mouse_genomes_project 6 129847171 129921161 + MGP_CASTEiJ_P0080529 Cracr2a protein_coding protein_coding MGP_CASTEiJ_T0080530.1 MGP_CASTEiJ_G0030398.1 mouse_genomes_project 6 129863811 129921066 + MGP_CASTEiJ_P0080530 Cracr2a protein_coding protein_coding MGP_CASTEiJ_T0077992.1 MGP_CASTEiJ_G0029894.1 mouse_genomes_project 6 56240981 56246173 - MGP_CASTEiJ_P0077992 Pyurf protein_coding protein_coding MGP_CASTEiJ_T0078529.1 MGP_CASTEiJ_G0030016.1 mouse_genomes_project 6 83458301 83471268 - MGP_CASTEiJ_P0078529 Mthfd2 protein_coding protein_coding MGP_CASTEiJ_T0078530.1 MGP_CASTEiJ_G0030016.1 mouse_genomes_project 6 83459012 83471215 - MGP_CASTEiJ_P0078530 Mthfd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078531.1 MGP_CASTEiJ_G0030016.1 mouse_genomes_project 6 83459172 83462965 - Mthfd2 protein_coding retained_intron MGP_CASTEiJ_T0078532.1 MGP_CASTEiJ_G0030016.1 mouse_genomes_project 6 83462991 83464223 - Mthfd2 protein_coding retained_intron MGP_CASTEiJ_T0078533.1 MGP_CASTEiJ_G0030016.1 mouse_genomes_project 6 83463209 83465284 - Mthfd2 protein_coding retained_intron MGP_CASTEiJ_T0078534.1 MGP_CASTEiJ_G0030016.1 mouse_genomes_project 6 83465035 83466075 - Mthfd2 protein_coding retained_intron MGP_CASTEiJ_T0078535.1 MGP_CASTEiJ_G0030016.1 mouse_genomes_project 6 83465539 83485465 - MGP_CASTEiJ_P0078535 Mthfd2 protein_coding protein_coding MGP_CASTEiJ_T0008421.1 MGP_CASTEiJ_G0006823.1 mouse_genomes_project 6 75797492 75804826 - Gm44113 lincRNA lincRNA MGP_CASTEiJ_T0000204.1 MGP_CASTEiJ_G0000154.1 mouse_genomes_project 6 69659520 69660084 - MGP_CASTEiJ_P0000204 Igkv8-24 IG_V_gene IG_V_gene MGP_CASTEiJ_T0078283.1 MGP_CASTEiJ_G0029963.1 mouse_genomes_project 6 72017421 72021754 - MGP_CASTEiJ_P0078283 Vamp5 protein_coding protein_coding MGP_CASTEiJ_T0078284.1 MGP_CASTEiJ_G0029963.1 mouse_genomes_project 6 72017638 72030808 - MGP_CASTEiJ_P0078284 Vamp5 protein_coding protein_coding MGP_CASTEiJ_T0078285.1 MGP_CASTEiJ_G0029963.1 mouse_genomes_project 6 72017644 72030854 - MGP_CASTEiJ_P0078285 Vamp5 protein_coding protein_coding MGP_CASTEiJ_T0002104.1 MGP_CASTEiJ_G0002024.1 mouse_genomes_project 6 144237168 144240687 + TEC TEC MGP_CASTEiJ_T0076759.1 MGP_CASTEiJ_G0029605.1 mouse_genomes_project 6 25658638 25664268 - MGP_CASTEiJ_P0076759 Gcc1 protein_coding protein_coding MGP_CASTEiJ_T0076760.1 MGP_CASTEiJ_G0029605.1 mouse_genomes_project 6 25660376 25671123 - MGP_CASTEiJ_P0076760 Gcc1 protein_coding protein_coding MGP_CASTEiJ_T0076761.1 MGP_CASTEiJ_G0029605.1 mouse_genomes_project 6 25662209 25663402 - MGP_CASTEiJ_P0076761 Gcc1 protein_coding protein_coding MGP_CASTEiJ_T0076762.1 MGP_CASTEiJ_G0029605.1 mouse_genomes_project 6 25663823 25666672 - MGP_CASTEiJ_P0076762 Gcc1 protein_coding protein_coding MGP_CASTEiJ_T0004932.1 MGP_CASTEiJ_G0004217.1 mouse_genomes_project 6 116955003 116968167 - Gm44079 antisense antisense MGP_CASTEiJ_T0000298.1 MGP_CASTEiJ_G0000247.1 mouse_genomes_project 6 69900945 69901217 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0098631.1 MGP_CASTEiJ_G0035562.1 mouse_genomes_project 6 89817635 89817770 - Gm25961 rRNA rRNA MGP_CASTEiJ_T0008428.1 MGP_CASTEiJ_G0006829.1 mouse_genomes_project 6 82920631 82937590 + Gm43878 lincRNA lincRNA MGP_CASTEiJ_T0008429.1 MGP_CASTEiJ_G0006829.1 mouse_genomes_project 6 82929812 82937602 + Gm43878 lincRNA lincRNA MGP_CASTEiJ_T0008430.1 MGP_CASTEiJ_G0006829.1 mouse_genomes_project 6 82929847 82940455 + Gm43878 lincRNA lincRNA MGP_CASTEiJ_T0080741.1 MGP_CASTEiJ_G0030475.1 mouse_genomes_project 6 136302144 136565538 + MGP_CASTEiJ_P0080741 Etv6 protein_coding protein_coding MGP_CASTEiJ_T0080742.1 MGP_CASTEiJ_G0030475.1 mouse_genomes_project 6 136302412 136543726 + MGP_CASTEiJ_P0080742 Etv6 protein_coding protein_coding MGP_CASTEiJ_T0080743.1 MGP_CASTEiJ_G0030475.1 mouse_genomes_project 6 136430037 136565544 + MGP_CASTEiJ_P0080743 Etv6 protein_coding protein_coding MGP_CASTEiJ_T0080744.1 MGP_CASTEiJ_G0030475.1 mouse_genomes_project 6 136518437 136583970 + MGP_CASTEiJ_P0080744 Etv6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0080745.1 MGP_CASTEiJ_G0030475.1 mouse_genomes_project 6 136529087 136557396 + Etv6 protein_coding retained_intron MGP_CASTEiJ_T0080746.1 MGP_CASTEiJ_G0030475.1 mouse_genomes_project 6 136543006 136543999 + Etv6 protein_coding processed_transcript MGP_CASTEiJ_T0102438.1 MGP_CASTEiJ_G0039163.1 mouse_genomes_project 6 135426491 135427393 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0076574.1 MGP_CASTEiJ_G0029567.1 mouse_genomes_project 6 14207327 14249310 + MGP_CASTEiJ_P0076574 Cav1 protein_coding protein_coding MGP_CASTEiJ_T0076575.1 MGP_CASTEiJ_G0029567.1 mouse_genomes_project 6 14207337 14248415 + MGP_CASTEiJ_P0076575 Cav1 protein_coding protein_coding MGP_CASTEiJ_T0076576.1 MGP_CASTEiJ_G0029567.1 mouse_genomes_project 6 14207402 14247267 + MGP_CASTEiJ_P0076576 Cav1 protein_coding protein_coding MGP_CASTEiJ_T0076577.1 MGP_CASTEiJ_G0029567.1 mouse_genomes_project 6 14207403 14232200 + Cav1 protein_coding processed_transcript MGP_CASTEiJ_T0076578.1 MGP_CASTEiJ_G0029567.1 mouse_genomes_project 6 14207403 14247322 + MGP_CASTEiJ_P0076578 Cav1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076579.1 MGP_CASTEiJ_G0029567.1 mouse_genomes_project 6 14207415 14209202 + MGP_CASTEiJ_P0076579 Cav1 protein_coding protein_coding MGP_CASTEiJ_T0076580.1 MGP_CASTEiJ_G0029567.1 mouse_genomes_project 6 14208046 14247124 + MGP_CASTEiJ_P0076580 Cav1 protein_coding protein_coding MGP_CASTEiJ_T0076581.1 MGP_CASTEiJ_G0029567.1 mouse_genomes_project 6 14208276 14247490 + MGP_CASTEiJ_P0076581 Cav1 protein_coding protein_coding MGP_CASTEiJ_T0076582.1 MGP_CASTEiJ_G0029567.1 mouse_genomes_project 6 14208638 14250601 + MGP_CASTEiJ_P0076582 Cav1 protein_coding protein_coding MGP_CASTEiJ_T0076583.1 MGP_CASTEiJ_G0029567.1 mouse_genomes_project 6 14208721 14232191 + Cav1 protein_coding processed_transcript MGP_CASTEiJ_T0102392.1 MGP_CASTEiJ_G0039117.1 mouse_genomes_project 6 56429416 56429918 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015058.1 MGP_CASTEiJ_G0013221.1 mouse_genomes_project 6 133731877 133731992 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008506.1 MGP_CASTEiJ_G0006889.1 mouse_genomes_project 6 126446481 126447683 - 1700027F06Rik lincRNA lincRNA MGP_CASTEiJ_T0102436.1 MGP_CASTEiJ_G0039161.1 mouse_genomes_project 6 135322607 135323540 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010462.1 MGP_CASTEiJ_G0008650.1 mouse_genomes_project 6 33982413 33982497 + Mir490 miRNA miRNA MGP_CASTEiJ_T0008461.1 MGP_CASTEiJ_G0006851.1 mouse_genomes_project 6 92258197 92264472 + Gm45218 lincRNA lincRNA MGP_CASTEiJ_T0001919.1 MGP_CASTEiJ_G0001840.1 mouse_genomes_project 6 50995720 50999466 - TEC TEC MGP_CASTEiJ_T0078524.1 MGP_CASTEiJ_G0030015.1 mouse_genomes_project 6 83361627 83457546 + MGP_CASTEiJ_P0078524 Slc4a5 protein_coding protein_coding MGP_CASTEiJ_T0078525.1 MGP_CASTEiJ_G0030015.1 mouse_genomes_project 6 83375407 83406316 + Slc4a5 protein_coding processed_transcript MGP_CASTEiJ_T0078526.1 MGP_CASTEiJ_G0030015.1 mouse_genomes_project 6 83375617 83457549 + MGP_CASTEiJ_P0078526 Slc4a5 protein_coding protein_coding MGP_CASTEiJ_T0078527.1 MGP_CASTEiJ_G0030015.1 mouse_genomes_project 6 83426865 83439680 + Slc4a5 protein_coding processed_transcript MGP_CASTEiJ_T0078528.1 MGP_CASTEiJ_G0030015.1 mouse_genomes_project 6 83438857 83449460 + Slc4a5 protein_coding processed_transcript MGP_CASTEiJ_T0080485.1 MGP_CASTEiJ_G0030389.1 mouse_genomes_project 6 129085388 129106535 + MGP_CASTEiJ_P0080485 Akap3 protein_coding protein_coding MGP_CASTEiJ_T0080486.1 MGP_CASTEiJ_G0030389.1 mouse_genomes_project 6 129085434 129106532 + MGP_CASTEiJ_P0080486 Akap3 protein_coding protein_coding MGP_CASTEiJ_T0080487.1 MGP_CASTEiJ_G0030389.1 mouse_genomes_project 6 129085450 129106535 + MGP_CASTEiJ_P0080487 Akap3 protein_coding protein_coding MGP_CASTEiJ_T0000179.1 MGP_CASTEiJ_G0000135.1 mouse_genomes_project 6 68443922 68444689 - MGP_CASTEiJ_P0000179 Igkv1-88 IG_V_gene IG_V_gene MGP_CASTEiJ_T0078427.1 MGP_CASTEiJ_G0029997.1 mouse_genomes_project 6 83148995 83151533 - MGP_CASTEiJ_P0078427 Dok1 protein_coding protein_coding MGP_CASTEiJ_T0078428.1 MGP_CASTEiJ_G0029997.1 mouse_genomes_project 6 83149001 83151530 - MGP_CASTEiJ_P0078428 Dok1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078429.1 MGP_CASTEiJ_G0029997.1 mouse_genomes_project 6 83149912 83150623 - MGP_CASTEiJ_P0078429 Dok1 protein_coding protein_coding MGP_CASTEiJ_T0077813.1 MGP_CASTEiJ_G0029850.1 mouse_genomes_project 6 51117219 51176202 + MGP_CASTEiJ_P0077813 Tax1bp1 protein_coding protein_coding MGP_CASTEiJ_T0077814.1 MGP_CASTEiJ_G0029850.1 mouse_genomes_project 6 51117240 51136709 + MGP_CASTEiJ_P0077814 Tax1bp1 protein_coding protein_coding MGP_CASTEiJ_T0077815.1 MGP_CASTEiJ_G0029850.1 mouse_genomes_project 6 51117253 51135030 + Tax1bp1 protein_coding retained_intron MGP_CASTEiJ_T0077816.1 MGP_CASTEiJ_G0029850.1 mouse_genomes_project 6 51117709 51136743 + MGP_CASTEiJ_P0077816 Tax1bp1 protein_coding protein_coding MGP_CASTEiJ_T0077817.1 MGP_CASTEiJ_G0029850.1 mouse_genomes_project 6 51117840 51130784 + MGP_CASTEiJ_P0077817 Tax1bp1 protein_coding protein_coding MGP_CASTEiJ_T0077818.1 MGP_CASTEiJ_G0029850.1 mouse_genomes_project 6 51145034 51146956 + Tax1bp1 protein_coding processed_transcript MGP_CASTEiJ_T0077819.1 MGP_CASTEiJ_G0029850.1 mouse_genomes_project 6 51167019 51171738 + Tax1bp1 protein_coding retained_intron MGP_CASTEiJ_T0002608.1 MGP_CASTEiJ_G0002502.1 mouse_genomes_project 6 39105010 39105463 + MGP_CASTEiJ_P0002608 Trbv23 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002609.1 MGP_CASTEiJ_G0002502.1 mouse_genomes_project 6 39105010 39105463 + MGP_CASTEiJ_P0002609 Trbv23 TR_V_gene TR_V_gene MGP_CASTEiJ_T0008525.1 MGP_CASTEiJ_G0006903.1 mouse_genomes_project 6 136921190 136923621 - Gm43949 lincRNA lincRNA MGP_CASTEiJ_T0078012.1 MGP_CASTEiJ_G0029903.1 mouse_genomes_project 6 56613774 56614769 - MGP_CASTEiJ_P0078012 protein_coding protein_coding MGP_CASTEiJ_T0002096.1 MGP_CASTEiJ_G0002016.1 mouse_genomes_project 6 140204732 140206319 - TEC TEC MGP_CASTEiJ_T0077621.1 MGP_CASTEiJ_G0029802.1 mouse_genomes_project 6 46764516 46776499 + MGP_CASTEiJ_P0077621 Gimap8 protein_coding protein_coding MGP_CASTEiJ_T0098998.1 MGP_CASTEiJ_G0035918.1 mouse_genomes_project 6 127321728 127322009 - Gm28967 sense_intronic sense_intronic MGP_CASTEiJ_T0002088.1 MGP_CASTEiJ_G0002008.1 mouse_genomes_project 6 136541116 136541812 - TEC TEC MGP_CASTEiJ_T0080243.1 MGP_CASTEiJ_G0030344.1 mouse_genomes_project 6 126820291 126834060 - MGP_CASTEiJ_P0080243 Ptpn6 protein_coding protein_coding MGP_CASTEiJ_T0080244.1 MGP_CASTEiJ_G0030344.1 mouse_genomes_project 6 126820291 126841561 - MGP_CASTEiJ_P0080244 Ptpn6 protein_coding protein_coding MGP_CASTEiJ_T0080245.1 MGP_CASTEiJ_G0030344.1 mouse_genomes_project 6 126820291 126841472 - MGP_CASTEiJ_P0080245 Ptpn6 protein_coding protein_coding MGP_CASTEiJ_T0080246.1 MGP_CASTEiJ_G0030344.1 mouse_genomes_project 6 126820304 126821427 - MGP_CASTEiJ_P0080246 Ptpn6 protein_coding protein_coding MGP_CASTEiJ_T0080247.1 MGP_CASTEiJ_G0030344.1 mouse_genomes_project 6 126820692 126841431 - MGP_CASTEiJ_P0080247 Ptpn6 protein_coding protein_coding MGP_CASTEiJ_T0080248.1 MGP_CASTEiJ_G0030344.1 mouse_genomes_project 6 126826500 126828368 - MGP_CASTEiJ_P0080248 Ptpn6 protein_coding protein_coding MGP_CASTEiJ_T0080249.1 MGP_CASTEiJ_G0030344.1 mouse_genomes_project 6 126826548 126828318 - MGP_CASTEiJ_P0080249 Ptpn6 protein_coding protein_coding MGP_CASTEiJ_T0080250.1 MGP_CASTEiJ_G0030344.1 mouse_genomes_project 6 126828653 126829615 - Ptpn6 protein_coding retained_intron MGP_CASTEiJ_T0080251.1 MGP_CASTEiJ_G0030344.1 mouse_genomes_project 6 126829807 126833677 - Ptpn6 protein_coding processed_transcript MGP_CASTEiJ_T0080252.1 MGP_CASTEiJ_G0030344.1 mouse_genomes_project 6 126833267 126833988 - MGP_CASTEiJ_P0080252 Ptpn6 protein_coding protein_coding MGP_CASTEiJ_T0080253.1 MGP_CASTEiJ_G0030344.1 mouse_genomes_project 6 126833560 126834016 - Ptpn6 protein_coding retained_intron MGP_CASTEiJ_T0101645.1 MGP_CASTEiJ_G0038490.1 mouse_genomes_project 6 101282310 101283342 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101646.1 MGP_CASTEiJ_G0038490.1 mouse_genomes_project 6 101283213 101285429 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0011306.1 MGP_CASTEiJ_G0009494.1 mouse_genomes_project 6 44037196 44037500 + Gm22839 misc_RNA misc_RNA MGP_CASTEiJ_T0011289.1 MGP_CASTEiJ_G0009477.1 mouse_genomes_project 6 3650682 3650889 + Gm27905 misc_RNA misc_RNA MGP_CASTEiJ_T0004955.1 MGP_CASTEiJ_G0004238.1 mouse_genomes_project 6 130256331 130268072 - Gm15870 antisense antisense MGP_CASTEiJ_T0101633.1 MGP_CASTEiJ_G0038485.1 mouse_genomes_project 6 31943186 31964035 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101634.1 MGP_CASTEiJ_G0038485.1 mouse_genomes_project 6 31943342 31961617 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101635.1 MGP_CASTEiJ_G0038485.1 mouse_genomes_project 6 31961585 31961758 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101636.1 MGP_CASTEiJ_G0038485.1 mouse_genomes_project 6 31962032 31964036 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0008541.1 MGP_CASTEiJ_G0006914.1 mouse_genomes_project 6 146130340 146181908 + D6Ertd474e lincRNA lincRNA MGP_CASTEiJ_T0008542.1 MGP_CASTEiJ_G0006914.1 mouse_genomes_project 6 146130340 146133565 + D6Ertd474e lincRNA lincRNA MGP_CASTEiJ_T0008543.1 MGP_CASTEiJ_G0006914.1 mouse_genomes_project 6 146130345 146183462 + D6Ertd474e lincRNA lincRNA MGP_CASTEiJ_T0008544.1 MGP_CASTEiJ_G0006914.1 mouse_genomes_project 6 146130345 146182263 + D6Ertd474e lincRNA lincRNA MGP_CASTEiJ_T0008545.1 MGP_CASTEiJ_G0006914.1 mouse_genomes_project 6 146171213 146182227 + D6Ertd474e lincRNA lincRNA MGP_CASTEiJ_T0078377.1 MGP_CASTEiJ_G0029984.1 mouse_genomes_project 6 78350788 78362004 + MGP_CASTEiJ_P0078377 Reg1 protein_coding protein_coding MGP_CASTEiJ_T0078378.1 MGP_CASTEiJ_G0029984.1 mouse_genomes_project 6 78350848 78362004 + MGP_CASTEiJ_P0078378 Reg1 protein_coding protein_coding MGP_CASTEiJ_T0078379.1 MGP_CASTEiJ_G0029984.1 mouse_genomes_project 6 78359316 78362003 + MGP_CASTEiJ_P0078379 Reg1 protein_coding protein_coding MGP_CASTEiJ_T0101219.1 MGP_CASTEiJ_G0038132.1 mouse_genomes_project 6 147773177 147773310 - Gm22792 snoRNA snoRNA MGP_CASTEiJ_T0101167.1 MGP_CASTEiJ_G0038080.1 mouse_genomes_project 6 47073921 47074055 + Gm24348 snoRNA snoRNA MGP_CASTEiJ_T0077397.1 MGP_CASTEiJ_G0029738.1 mouse_genomes_project 6 39871170 39875583 + MGP_CASTEiJ_P0077397 Sval1 protein_coding protein_coding MGP_CASTEiJ_T0099001.1 MGP_CASTEiJ_G0035921.1 mouse_genomes_project 6 137238880 137241115 - Gm44366 sense_intronic sense_intronic MGP_CASTEiJ_T0017571.1 MGP_CASTEiJ_G0014968.1 mouse_genomes_project 6 145666518 145685593 + Gm7457 processed_transcript antisense MGP_CASTEiJ_T0017572.1 MGP_CASTEiJ_G0014968.1 mouse_genomes_project 6 145666672 145669237 + Gm7457 processed_transcript retained_intron MGP_CASTEiJ_T0015061.1 MGP_CASTEiJ_G0013224.1 mouse_genomes_project 6 133904807 133906661 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011287.1 MGP_CASTEiJ_G0009475.1 mouse_genomes_project 6 1100566 1100893 + Gm24442 misc_RNA misc_RNA MGP_CASTEiJ_T0101171.1 MGP_CASTEiJ_G0038084.1 mouse_genomes_project 6 53488670 53488799 + Gm24230 snoRNA snoRNA MGP_CASTEiJ_T0098394.1 MGP_CASTEiJ_G0035325.1 mouse_genomes_project 6 69508811 69509041 + pseudogene pseudogene MGP_CASTEiJ_T0076813.1 MGP_CASTEiJ_G0029617.1 mouse_genomes_project 6 26609842 26617509 + Fam71f1 protein_coding processed_transcript MGP_CASTEiJ_T0076814.1 MGP_CASTEiJ_G0029617.1 mouse_genomes_project 6 26609842 26628676 + MGP_CASTEiJ_P0076814 Fam71f1 protein_coding protein_coding MGP_CASTEiJ_T0076815.1 MGP_CASTEiJ_G0029617.1 mouse_genomes_project 6 26609859 26628511 + MGP_CASTEiJ_P0076815 Fam71f1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076816.1 MGP_CASTEiJ_G0029617.1 mouse_genomes_project 6 26609859 26628511 + MGP_CASTEiJ_P0076816 Fam71f1 protein_coding protein_coding MGP_CASTEiJ_T0076817.1 MGP_CASTEiJ_G0029617.1 mouse_genomes_project 6 26609901 26628511 + MGP_CASTEiJ_P0076817 Fam71f1 protein_coding protein_coding MGP_CASTEiJ_T0008404.1 MGP_CASTEiJ_G0006807.1 mouse_genomes_project 6 59711302 59715711 + Gm35386 lincRNA lincRNA MGP_CASTEiJ_T0015011.1 MGP_CASTEiJ_G0013174.1 mouse_genomes_project 6 123424602 123424884 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015010.1 MGP_CASTEiJ_G0013173.1 mouse_genomes_project 6 123416079 123416407 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081296.1 MGP_CASTEiJ_G0030578.1 mouse_genomes_project 6 151969627 151970790 - Caprin2 protein_coding retained_intron MGP_CASTEiJ_T0081297.1 MGP_CASTEiJ_G0030578.1 mouse_genomes_project 6 151969627 152029212 - MGP_CASTEiJ_P0081297 Caprin2 protein_coding protein_coding MGP_CASTEiJ_T0081298.1 MGP_CASTEiJ_G0030578.1 mouse_genomes_project 6 151969628 151979422 - MGP_CASTEiJ_P0081298 Caprin2 protein_coding protein_coding MGP_CASTEiJ_T0081299.1 MGP_CASTEiJ_G0030578.1 mouse_genomes_project 6 151969628 152029125 - MGP_CASTEiJ_P0081299 Caprin2 protein_coding protein_coding MGP_CASTEiJ_T0081300.1 MGP_CASTEiJ_G0030578.1 mouse_genomes_project 6 151971171 151977217 - Caprin2 protein_coding retained_intron MGP_CASTEiJ_T0081301.1 MGP_CASTEiJ_G0030578.1 mouse_genomes_project 6 151971708 151979393 - Caprin2 protein_coding processed_transcript MGP_CASTEiJ_T0081302.1 MGP_CASTEiJ_G0030578.1 mouse_genomes_project 6 151975644 151991352 - Caprin2 protein_coding processed_transcript MGP_CASTEiJ_T0081303.1 MGP_CASTEiJ_G0030578.1 mouse_genomes_project 6 152009781 152028434 - MGP_CASTEiJ_P0081303 Caprin2 protein_coding protein_coding MGP_CASTEiJ_T0081304.1 MGP_CASTEiJ_G0030578.1 mouse_genomes_project 6 152017475 152023749 - Caprin2 protein_coding retained_intron MGP_CASTEiJ_T0081305.1 MGP_CASTEiJ_G0030578.1 mouse_genomes_project 6 152020609 152029137 - Caprin2 protein_coding processed_transcript MGP_CASTEiJ_T0081306.1 MGP_CASTEiJ_G0030578.1 mouse_genomes_project 6 152027144 152028584 - Caprin2 protein_coding processed_transcript MGP_CASTEiJ_T0000277.1 MGP_CASTEiJ_G0000226.1 mouse_genomes_project 6 68084941 68085239 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0077976.1 MGP_CASTEiJ_G0029885.1 mouse_genomes_project 6 55739227 55740254 + MGP_CASTEiJ_P0077976 Vmn1r11 protein_coding protein_coding MGP_CASTEiJ_T0014799.1 MGP_CASTEiJ_G0012962.1 mouse_genomes_project 6 47078815 47079144 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017484.1 MGP_CASTEiJ_G0014941.1 mouse_genomes_project 6 13324403 13342698 - processed_transcript lincRNA MGP_CASTEiJ_T0017485.1 MGP_CASTEiJ_G0014941.1 mouse_genomes_project 6 13340099 13342652 - processed_transcript retained_intron MGP_CASTEiJ_T0079911.1 MGP_CASTEiJ_G0030278.1 mouse_genomes_project 6 120928596 121058348 + MGP_CASTEiJ_P0079911 Cacna2d4 protein_coding protein_coding MGP_CASTEiJ_T0079912.1 MGP_CASTEiJ_G0030278.1 mouse_genomes_project 6 120928597 120977870 + Cacna2d4 protein_coding retained_intron MGP_CASTEiJ_T0079913.1 MGP_CASTEiJ_G0030278.1 mouse_genomes_project 6 120928665 121056400 + MGP_CASTEiJ_P0079913 Cacna2d4 protein_coding protein_coding MGP_CASTEiJ_T0079914.1 MGP_CASTEiJ_G0030278.1 mouse_genomes_project 6 120946650 121005478 + Cacna2d4 protein_coding processed_transcript MGP_CASTEiJ_T0079915.1 MGP_CASTEiJ_G0030278.1 mouse_genomes_project 6 120949734 120972890 + Cacna2d4 protein_coding processed_transcript MGP_CASTEiJ_T0079916.1 MGP_CASTEiJ_G0030278.1 mouse_genomes_project 6 120967563 120972188 + Cacna2d4 protein_coding processed_transcript MGP_CASTEiJ_T0079917.1 MGP_CASTEiJ_G0030278.1 mouse_genomes_project 6 120967764 120972231 + Cacna2d4 protein_coding retained_intron MGP_CASTEiJ_T0079922.1 MGP_CASTEiJ_G0030278.1 mouse_genomes_project 6 121036357 121049930 + Cacna2d4 protein_coding processed_transcript MGP_CASTEiJ_T0079923.1 MGP_CASTEiJ_G0030278.1 mouse_genomes_project 6 121036390 121043996 + Cacna2d4 protein_coding retained_intron MGP_CASTEiJ_T0079924.1 MGP_CASTEiJ_G0030278.1 mouse_genomes_project 6 121036471 121058356 + MGP_CASTEiJ_P0079924 Cacna2d4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079925.1 MGP_CASTEiJ_G0030278.1 mouse_genomes_project 6 121038562 121053135 + Cacna2d4 protein_coding processed_transcript MGP_CASTEiJ_T0077467.1 MGP_CASTEiJ_G0029761.1 mouse_genomes_project 6 40652916 40653684 + MGP_CASTEiJ_P0077467 Olfr38 protein_coding protein_coding MGP_CASTEiJ_T0000282.1 MGP_CASTEiJ_G0000231.1 mouse_genomes_project 6 68475982 68476383 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0010483.1 MGP_CASTEiJ_G0008671.1 mouse_genomes_project 6 88462312 88462440 - miRNA miRNA MGP_CASTEiJ_T0101175.1 MGP_CASTEiJ_G0038088.1 mouse_genomes_project 6 57688644 57688776 + Gm22367 snoRNA snoRNA MGP_CASTEiJ_T0099054.1 MGP_CASTEiJ_G0035968.1 mouse_genomes_project 6 38958565 38963757 + sense_overlapping sense_overlapping MGP_CASTEiJ_T0014704.1 MGP_CASTEiJ_G0012867.1 mouse_genomes_project 6 1109774 1110096 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002070.1 MGP_CASTEiJ_G0001990.1 mouse_genomes_project 6 128767533 128768056 - TEC TEC MGP_CASTEiJ_T0010494.1 MGP_CASTEiJ_G0008682.1 mouse_genomes_project 6 114934101 114934201 + Gm24387 miRNA miRNA MGP_CASTEiJ_T0078762.1 MGP_CASTEiJ_G0030062.1 mouse_genomes_project 6 86794608 86807112 - MGP_CASTEiJ_P0078762 Pcyox1 protein_coding protein_coding MGP_CASTEiJ_T0078763.1 MGP_CASTEiJ_G0030062.1 mouse_genomes_project 6 86797279 86807099 - MGP_CASTEiJ_P0078763 Pcyox1 protein_coding protein_coding MGP_CASTEiJ_T0078764.1 MGP_CASTEiJ_G0030062.1 mouse_genomes_project 6 86797597 86800960 - MGP_CASTEiJ_P0078764 Pcyox1 protein_coding protein_coding MGP_CASTEiJ_T0078765.1 MGP_CASTEiJ_G0030062.1 mouse_genomes_project 6 86800299 86807101 - MGP_CASTEiJ_P0078765 Pcyox1 protein_coding protein_coding MGP_CASTEiJ_T0078766.1 MGP_CASTEiJ_G0030062.1 mouse_genomes_project 6 86803138 86806584 - Pcyox1 protein_coding retained_intron MGP_CASTEiJ_T0078767.1 MGP_CASTEiJ_G0030062.1 mouse_genomes_project 6 86805740 86807077 - Pcyox1 protein_coding retained_intron MGP_CASTEiJ_T0011301.1 MGP_CASTEiJ_G0009489.1 mouse_genomes_project 6 16031584 16031892 + Gm22718 misc_RNA misc_RNA MGP_CASTEiJ_T0098990.1 MGP_CASTEiJ_G0035910.1 mouse_genomes_project 6 37980076 37994028 + Gm26638 sense_intronic sense_intronic MGP_CASTEiJ_T0080729.1 MGP_CASTEiJ_G0030466.1 mouse_genomes_project 6 135358521 135359451 - MGP_CASTEiJ_P0080729 Tas2r113 protein_coding protein_coding MGP_CASTEiJ_T0076465.1 MGP_CASTEiJ_G0029548.1 mouse_genomes_project 6 5331210 5416648 + MGP_CASTEiJ_P0076465 Glcci1 protein_coding protein_coding MGP_CASTEiJ_T0076466.1 MGP_CASTEiJ_G0029548.1 mouse_genomes_project 6 5332830 5396122 + MGP_CASTEiJ_P0076466 Glcci1 protein_coding protein_coding MGP_CASTEiJ_T0076467.1 MGP_CASTEiJ_G0029548.1 mouse_genomes_project 6 5341074 5412619 + MGP_CASTEiJ_P0076467 Glcci1 protein_coding protein_coding MGP_CASTEiJ_T0076468.1 MGP_CASTEiJ_G0029548.1 mouse_genomes_project 6 5341112 5412510 + MGP_CASTEiJ_P0076468 Glcci1 protein_coding protein_coding MGP_CASTEiJ_T0076469.1 MGP_CASTEiJ_G0029548.1 mouse_genomes_project 6 5354792 5413064 + MGP_CASTEiJ_P0076469 Glcci1 protein_coding protein_coding MGP_CASTEiJ_T0076470.1 MGP_CASTEiJ_G0029548.1 mouse_genomes_project 6 5396179 5408884 + Glcci1 protein_coding processed_transcript MGP_CASTEiJ_T0014785.1 MGP_CASTEiJ_G0012948.1 mouse_genomes_project 6 41268618 41270366 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008474.1 MGP_CASTEiJ_G0006861.1 mouse_genomes_project 6 102664865 102682750 + Gm44169 lincRNA lincRNA MGP_CASTEiJ_T0000293.1 MGP_CASTEiJ_G0000242.1 mouse_genomes_project 6 69290886 69291337 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0078464.1 MGP_CASTEiJ_G0030002.1 mouse_genomes_project 6 83188566 83190461 - MGP_CASTEiJ_P0078464 Tlx2 protein_coding protein_coding MGP_CASTEiJ_T0078465.1 MGP_CASTEiJ_G0030002.1 mouse_genomes_project 6 83188833 83190529 - MGP_CASTEiJ_P0078465 Tlx2 protein_coding protein_coding MGP_CASTEiJ_T0076737.1 MGP_CASTEiJ_G0029602.1 mouse_genomes_project 6 22887162 22959223 - MGP_CASTEiJ_P0076737 Pot1a protein_coding protein_coding MGP_CASTEiJ_T0076738.1 MGP_CASTEiJ_G0029602.1 mouse_genomes_project 6 22887927 22889570 - Pot1a protein_coding retained_intron MGP_CASTEiJ_T0076739.1 MGP_CASTEiJ_G0029602.1 mouse_genomes_project 6 22888007 22947567 - MGP_CASTEiJ_P0076739 Pot1a protein_coding protein_coding MGP_CASTEiJ_T0076740.1 MGP_CASTEiJ_G0029602.1 mouse_genomes_project 6 22891403 22959223 - Pot1a protein_coding retained_intron MGP_CASTEiJ_T0076741.1 MGP_CASTEiJ_G0029602.1 mouse_genomes_project 6 22903409 22959191 - MGP_CASTEiJ_P0076741 Pot1a protein_coding protein_coding MGP_CASTEiJ_T0076742.1 MGP_CASTEiJ_G0029602.1 mouse_genomes_project 6 22918132 22959219 - Pot1a protein_coding processed_transcript MGP_CASTEiJ_T0076743.1 MGP_CASTEiJ_G0029602.1 mouse_genomes_project 6 22944074 22959243 - Pot1a protein_coding retained_intron MGP_CASTEiJ_T0076744.1 MGP_CASTEiJ_G0029602.1 mouse_genomes_project 6 22948092 22959213 - Pot1a protein_coding retained_intron MGP_CASTEiJ_T0099952.1 MGP_CASTEiJ_G0036865.1 mouse_genomes_project 6 51862594 51862758 + Gm25818 snRNA snRNA MGP_CASTEiJ_T0077476.1 MGP_CASTEiJ_G0029767.1 mouse_genomes_project 6 40813279 40814272 + MGP_CASTEiJ_P0077476 Olfr446 protein_coding protein_coding MGP_CASTEiJ_T0015039.1 MGP_CASTEiJ_G0013202.1 mouse_genomes_project 6 129222044 129222322 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078184.1 MGP_CASTEiJ_G0029945.1 mouse_genomes_project 6 70875115 70890976 + MGP_CASTEiJ_P0078184 Cd8b1 protein_coding protein_coding MGP_CASTEiJ_T0079328.1 MGP_CASTEiJ_G0030170.1 mouse_genomes_project 6 100693487 100695876 + MGP_CASTEiJ_P0079328 Gpr27 protein_coding protein_coding MGP_CASTEiJ_T0000160.1 MGP_CASTEiJ_G0000122.1 mouse_genomes_project 6 68029679 68030180 + MGP_CASTEiJ_P0000160 Igkv16-104 IG_V_gene IG_V_gene MGP_CASTEiJ_T0008482.1 MGP_CASTEiJ_G0006867.1 mouse_genomes_project 6 108943929 108948722 + 4933431M02Rik lincRNA lincRNA MGP_CASTEiJ_T0078048.1 MGP_CASTEiJ_G0029913.1 mouse_genomes_project 6 57943662 58028339 - MGP_CASTEiJ_P0078048 Gprin3 protein_coding protein_coding MGP_CASTEiJ_T0079056.1 MGP_CASTEiJ_G0030117.1 mouse_genomes_project 6 90676442 90685143 - MGP_CASTEiJ_P0079056 protein_coding protein_coding MGP_CASTEiJ_T0014700.1 MGP_CASTEiJ_G0012863.1 mouse_genomes_project 6 581381 581780 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077303.1 MGP_CASTEiJ_G0029700.1 mouse_genomes_project 6 37423887 37555261 - MGP_CASTEiJ_P0077303 Braf protein_coding protein_coding MGP_CASTEiJ_T0077304.1 MGP_CASTEiJ_G0029700.1 mouse_genomes_project 6 37434780 37554991 - MGP_CASTEiJ_P0077304 Braf protein_coding protein_coding MGP_CASTEiJ_T0077305.1 MGP_CASTEiJ_G0029700.1 mouse_genomes_project 6 37463910 37469295 - Braf protein_coding retained_intron MGP_CASTEiJ_T0077306.1 MGP_CASTEiJ_G0029700.1 mouse_genomes_project 6 37464946 37467765 - Braf protein_coding retained_intron MGP_CASTEiJ_T0077307.1 MGP_CASTEiJ_G0029700.1 mouse_genomes_project 6 37476787 37491432 - Braf protein_coding retained_intron MGP_CASTEiJ_T0077136.1 MGP_CASTEiJ_G0029666.1 mouse_genomes_project 6 32571622 32575443 - Cnot4 protein_coding retained_intron MGP_CASTEiJ_T0077137.1 MGP_CASTEiJ_G0029666.1 mouse_genomes_project 6 32571622 32693003 - MGP_CASTEiJ_P0077137 Cnot4 protein_coding protein_coding MGP_CASTEiJ_T0077138.1 MGP_CASTEiJ_G0029666.1 mouse_genomes_project 6 32571623 32693072 - MGP_CASTEiJ_P0077138 Cnot4 protein_coding protein_coding MGP_CASTEiJ_T0077139.1 MGP_CASTEiJ_G0029666.1 mouse_genomes_project 6 32571628 32693067 - MGP_CASTEiJ_P0077139 Cnot4 protein_coding protein_coding MGP_CASTEiJ_T0077140.1 MGP_CASTEiJ_G0029666.1 mouse_genomes_project 6 32595484 32693093 - MGP_CASTEiJ_P0077140 Cnot4 protein_coding protein_coding MGP_CASTEiJ_T0077141.1 MGP_CASTEiJ_G0029666.1 mouse_genomes_project 6 32596785 32640679 - MGP_CASTEiJ_P0077141 Cnot4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077142.1 MGP_CASTEiJ_G0029666.1 mouse_genomes_project 6 32604386 32608354 - Cnot4 protein_coding retained_intron MGP_CASTEiJ_T0077143.1 MGP_CASTEiJ_G0029666.1 mouse_genomes_project 6 32604820 32693065 - Cnot4 protein_coding processed_transcript MGP_CASTEiJ_T0008414.1 MGP_CASTEiJ_G0006816.1 mouse_genomes_project 6 70909350 70929959 + Gm44174 lincRNA lincRNA MGP_CASTEiJ_T0010449.1 MGP_CASTEiJ_G0008637.1 mouse_genomes_project 6 16565856 16565976 + Mir6370 miRNA miRNA MGP_CASTEiJ_T0015025.1 MGP_CASTEiJ_G0013188.1 mouse_genomes_project 6 125069661 125069755 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015047.1 MGP_CASTEiJ_G0013210.1 mouse_genomes_project 6 130674450 130674847 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077388.1 MGP_CASTEiJ_G0029735.1 mouse_genomes_project 6 39638295 39639404 - MGP_CASTEiJ_P0077388 Olfr459 protein_coding protein_coding MGP_CASTEiJ_T0077389.1 MGP_CASTEiJ_G0029735.1 mouse_genomes_project 6 39638295 39642184 - MGP_CASTEiJ_P0077389 Olfr459 protein_coding protein_coding MGP_CASTEiJ_T0008473.1 MGP_CASTEiJ_G0006860.1 mouse_genomes_project 6 102140399 102199666 + Gm43950 lincRNA lincRNA MGP_CASTEiJ_T0008410.1 MGP_CASTEiJ_G0006812.1 mouse_genomes_project 6 70230987 70251497 + Gm43291 lincRNA lincRNA MGP_CASTEiJ_T0017532.1 MGP_CASTEiJ_G0014953.1 mouse_genomes_project 6 62485693 62490270 - processed_transcript retained_intron MGP_CASTEiJ_T0002035.1 MGP_CASTEiJ_G0001956.1 mouse_genomes_project 6 102415899 102418584 - TEC TEC MGP_CASTEiJ_T0002105.1 MGP_CASTEiJ_G0002025.1 mouse_genomes_project 6 146888312 146890455 - TEC TEC MGP_CASTEiJ_T0014991.1 MGP_CASTEiJ_G0013154.1 mouse_genomes_project 6 115094538 115094763 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002032.1 MGP_CASTEiJ_G0001953.1 mouse_genomes_project 6 101875510 101877572 + TEC TEC MGP_CASTEiJ_T0080520.1 MGP_CASTEiJ_G0030397.1 mouse_genomes_project 6 129719045 129756707 + MGP_CASTEiJ_P0080520 Parp11 protein_coding protein_coding MGP_CASTEiJ_T0080521.1 MGP_CASTEiJ_G0030397.1 mouse_genomes_project 6 129723401 129745559 + Parp11 protein_coding retained_intron MGP_CASTEiJ_T0080522.1 MGP_CASTEiJ_G0030397.1 mouse_genomes_project 6 129723429 129756658 + MGP_CASTEiJ_P0080522 Parp11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080523.1 MGP_CASTEiJ_G0030397.1 mouse_genomes_project 6 129723432 129775887 + MGP_CASTEiJ_P0080523 Parp11 protein_coding protein_coding MGP_CASTEiJ_T0080524.1 MGP_CASTEiJ_G0030397.1 mouse_genomes_project 6 129723447 129744457 + Parp11 protein_coding retained_intron MGP_CASTEiJ_T0080525.1 MGP_CASTEiJ_G0030397.1 mouse_genomes_project 6 129723456 129757629 + MGP_CASTEiJ_P0080525 Parp11 protein_coding protein_coding MGP_CASTEiJ_T0080526.1 MGP_CASTEiJ_G0030397.1 mouse_genomes_project 6 129745057 129746815 + Parp11 protein_coding retained_intron MGP_CASTEiJ_T0080527.1 MGP_CASTEiJ_G0030397.1 mouse_genomes_project 6 129749546 129757520 + Parp11 protein_coding retained_intron MGP_CASTEiJ_T0080528.1 MGP_CASTEiJ_G0030397.1 mouse_genomes_project 6 129756228 129774198 + Parp11 protein_coding retained_intron MGP_CASTEiJ_T0076640.1 MGP_CASTEiJ_G0029575.1 mouse_genomes_project 6 15829639 15835138 + MGP_CASTEiJ_P0076640 Lsm8 protein_coding protein_coding MGP_CASTEiJ_T0076641.1 MGP_CASTEiJ_G0029575.1 mouse_genomes_project 6 15829701 15836789 + Lsm8 protein_coding retained_intron MGP_CASTEiJ_T0076642.1 MGP_CASTEiJ_G0029575.1 mouse_genomes_project 6 15829716 15831480 + Lsm8 protein_coding retained_intron MGP_CASTEiJ_T0076643.1 MGP_CASTEiJ_G0029575.1 mouse_genomes_project 6 15829728 15834833 + MGP_CASTEiJ_P0076643 Lsm8 protein_coding protein_coding MGP_CASTEiJ_T0078074.1 MGP_CASTEiJ_G0029919.1 mouse_genomes_project 6 64367192 64381535 + MGP_CASTEiJ_P0078074 Smarcad1 protein_coding protein_coding MGP_CASTEiJ_T0078075.1 MGP_CASTEiJ_G0029919.1 mouse_genomes_project 6 64367218 64439576 + MGP_CASTEiJ_P0078075 Smarcad1 protein_coding protein_coding MGP_CASTEiJ_T0078076.1 MGP_CASTEiJ_G0029919.1 mouse_genomes_project 6 64367230 64368171 + Smarcad1 protein_coding retained_intron MGP_CASTEiJ_T0078077.1 MGP_CASTEiJ_G0029919.1 mouse_genomes_project 6 64367276 64368741 + MGP_CASTEiJ_P0078077 Smarcad1 protein_coding protein_coding MGP_CASTEiJ_T0078078.1 MGP_CASTEiJ_G0029919.1 mouse_genomes_project 6 64367445 64368813 + MGP_CASTEiJ_P0078078 Smarcad1 protein_coding protein_coding MGP_CASTEiJ_T0078079.1 MGP_CASTEiJ_G0029919.1 mouse_genomes_project 6 64367467 64377364 + MGP_CASTEiJ_P0078079 Smarcad1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078080.1 MGP_CASTEiJ_G0029919.1 mouse_genomes_project 6 64367475 64377453 + MGP_CASTEiJ_P0078080 Smarcad1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078081.1 MGP_CASTEiJ_G0029919.1 mouse_genomes_project 6 64367488 64408510 + Smarcad1 protein_coding processed_transcript MGP_CASTEiJ_T0078082.1 MGP_CASTEiJ_G0029919.1 mouse_genomes_project 6 64367822 64439110 + MGP_CASTEiJ_P0078082 Smarcad1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078083.1 MGP_CASTEiJ_G0029919.1 mouse_genomes_project 6 64377486 64394471 + Smarcad1 protein_coding retained_intron MGP_CASTEiJ_T0078084.1 MGP_CASTEiJ_G0029919.1 mouse_genomes_project 6 64382709 64401838 + Smarcad1 protein_coding processed_transcript MGP_CASTEiJ_T0078085.1 MGP_CASTEiJ_G0029919.1 mouse_genomes_project 6 64402003 64421853 + MGP_CASTEiJ_P0078085 Smarcad1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078086.1 MGP_CASTEiJ_G0029919.1 mouse_genomes_project 6 64404355 64407386 + Smarcad1 protein_coding retained_intron MGP_CASTEiJ_T0078087.1 MGP_CASTEiJ_G0029919.1 mouse_genomes_project 6 64423343 64423991 + Smarcad1 protein_coding retained_intron MGP_CASTEiJ_T0078088.1 MGP_CASTEiJ_G0029919.1 mouse_genomes_project 6 64429671 64433493 + Smarcad1 protein_coding retained_intron MGP_CASTEiJ_T0000185.1 MGP_CASTEiJ_G0000140.1 mouse_genomes_project 6 69083435 69083897 - MGP_CASTEiJ_P0000185 Igkv4-80 IG_V_gene IG_V_gene MGP_CASTEiJ_T0001934.1 MGP_CASTEiJ_G0001855.1 mouse_genomes_project 6 70830503 70833358 + TEC TEC MGP_CASTEiJ_T0078864.1 MGP_CASTEiJ_G0030077.1 mouse_genomes_project 6 87806442 87811725 - MGP_CASTEiJ_P0078864 Gkn1 protein_coding protein_coding MGP_CASTEiJ_T0008535.1 MGP_CASTEiJ_G0006909.1 mouse_genomes_project 6 142292729 142294836 - Gm44272 lincRNA lincRNA MGP_CASTEiJ_T0076336.1 MGP_CASTEiJ_G0029521.1 mouse_genomes_project 6 718892 722561 + MGP_CASTEiJ_P0076336 Gngt1 protein_coding protein_coding MGP_CASTEiJ_T0076337.1 MGP_CASTEiJ_G0029521.1 mouse_genomes_project 6 718897 722025 + Gngt1 protein_coding retained_intron MGP_CASTEiJ_T0001967.1 MGP_CASTEiJ_G0001888.1 mouse_genomes_project 6 80489021 80491734 + TEC TEC MGP_CASTEiJ_T0081251.1 MGP_CASTEiJ_G0030570.1 mouse_genomes_project 6 150118046 150128061 - MGP_CASTEiJ_P0081251 Mansc4 protein_coding protein_coding MGP_CASTEiJ_T0081252.1 MGP_CASTEiJ_G0030570.1 mouse_genomes_project 6 150121366 150128030 - MGP_CASTEiJ_P0081252 Mansc4 protein_coding protein_coding MGP_CASTEiJ_T0001849.1 MGP_CASTEiJ_G0001770.1 mouse_genomes_project 6 1999053 2004729 - TEC TEC MGP_CASTEiJ_T0080310.1 MGP_CASTEiJ_G0030355.1 mouse_genomes_project 6 126944186 126963569 - MGP_CASTEiJ_P0080310 P3h3 protein_coding protein_coding MGP_CASTEiJ_T0080311.1 MGP_CASTEiJ_G0030355.1 mouse_genomes_project 6 126946224 126963546 - MGP_CASTEiJ_P0080311 P3h3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080312.1 MGP_CASTEiJ_G0030355.1 mouse_genomes_project 6 126946512 126947812 - P3h3 protein_coding retained_intron MGP_CASTEiJ_T0080313.1 MGP_CASTEiJ_G0030355.1 mouse_genomes_project 6 126950534 126956797 - P3h3 protein_coding retained_intron MGP_CASTEiJ_T0080314.1 MGP_CASTEiJ_G0030355.1 mouse_genomes_project 6 126951183 126960729 - P3h3 protein_coding retained_intron MGP_CASTEiJ_T0080315.1 MGP_CASTEiJ_G0030355.1 mouse_genomes_project 6 126951225 126960632 - P3h3 protein_coding retained_intron MGP_CASTEiJ_T0080316.1 MGP_CASTEiJ_G0030355.1 mouse_genomes_project 6 126960200 126960975 - P3h3 protein_coding retained_intron MGP_CASTEiJ_T0014983.1 MGP_CASTEiJ_G0013146.1 mouse_genomes_project 6 111384412 111384956 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102376.1 MGP_CASTEiJ_G0039101.1 mouse_genomes_project 6 38887432 38888074 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0004865.1 MGP_CASTEiJ_G0004175.1 mouse_genomes_project 6 84204350 84207555 - Gm43918 antisense antisense MGP_CASTEiJ_T0078375.1 MGP_CASTEiJ_G0029982.1 mouse_genomes_project 6 78311068 78317459 + MGP_CASTEiJ_P0078375 Reg3a protein_coding protein_coding MGP_CASTEiJ_T0014836.1 MGP_CASTEiJ_G0012999.1 mouse_genomes_project 6 60146116 60147002 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077604.1 MGP_CASTEiJ_G0029797.1 mouse_genomes_project 6 46706155 46730620 + MGP_CASTEiJ_P0077604 Gm45021 protein_coding protein_coding MGP_CASTEiJ_T0010480.1 MGP_CASTEiJ_G0008668.1 mouse_genomes_project 6 83564658 83564765 - Mir6374 miRNA miRNA MGP_CASTEiJ_T0078166.1 MGP_CASTEiJ_G0029940.1 mouse_genomes_project 6 70478631 70483172 + MGP_CASTEiJ_P0078166 protein_coding protein_coding MGP_CASTEiJ_T0078167.1 MGP_CASTEiJ_G0029940.1 mouse_genomes_project 6 70478706 70483175 + MGP_CASTEiJ_P0078167 protein_coding protein_coding MGP_CASTEiJ_T0099985.1 MGP_CASTEiJ_G0036898.1 mouse_genomes_project 6 132529495 132529569 + Gm23977 snRNA snRNA MGP_CASTEiJ_T0081112.1 MGP_CASTEiJ_G0030547.1 mouse_genomes_project 6 147962259 148020155 - MGP_CASTEiJ_P0081112 Bcat1 protein_coding protein_coding MGP_CASTEiJ_T0081113.1 MGP_CASTEiJ_G0030547.1 mouse_genomes_project 6 147967640 148054356 - MGP_CASTEiJ_P0081113 Bcat1 protein_coding protein_coding MGP_CASTEiJ_T0081114.1 MGP_CASTEiJ_G0030547.1 mouse_genomes_project 6 147972610 148054356 - MGP_CASTEiJ_P0081114 Bcat1 protein_coding protein_coding MGP_CASTEiJ_T0081115.1 MGP_CASTEiJ_G0030547.1 mouse_genomes_project 6 147972890 148005041 - Bcat1 protein_coding processed_transcript MGP_CASTEiJ_T0081116.1 MGP_CASTEiJ_G0030547.1 mouse_genomes_project 6 147977121 148019953 - MGP_CASTEiJ_P0081116 Bcat1 protein_coding protein_coding MGP_CASTEiJ_T0081117.1 MGP_CASTEiJ_G0030547.1 mouse_genomes_project 6 147984978 148002350 - MGP_CASTEiJ_P0081117 Bcat1 protein_coding protein_coding MGP_CASTEiJ_T0081118.1 MGP_CASTEiJ_G0030547.1 mouse_genomes_project 6 147988329 148019194 - MGP_CASTEiJ_P0081118 Bcat1 protein_coding protein_coding MGP_CASTEiJ_T0081119.1 MGP_CASTEiJ_G0030547.1 mouse_genomes_project 6 148002296 148012143 - Bcat1 protein_coding processed_transcript MGP_CASTEiJ_T0081120.1 MGP_CASTEiJ_G0030547.1 mouse_genomes_project 6 148002315 148019002 - MGP_CASTEiJ_P0081120 Bcat1 protein_coding protein_coding MGP_CASTEiJ_T0081121.1 MGP_CASTEiJ_G0030547.1 mouse_genomes_project 6 148002379 148012255 - Bcat1 protein_coding processed_transcript MGP_CASTEiJ_T0079041.1 MGP_CASTEiJ_G0030108.1 mouse_genomes_project 6 89952613 90164419 - MGP_CASTEiJ_P0079041 Chchd6 protein_coding protein_coding MGP_CASTEiJ_T0079042.1 MGP_CASTEiJ_G0030108.1 mouse_genomes_project 6 89952618 90164419 - MGP_CASTEiJ_P0079042 Chchd6 protein_coding protein_coding MGP_CASTEiJ_T0079043.1 MGP_CASTEiJ_G0030108.1 mouse_genomes_project 6 89987477 90164371 - Chchd6 protein_coding retained_intron MGP_CASTEiJ_T0079044.1 MGP_CASTEiJ_G0030108.1 mouse_genomes_project 6 90138106 90164378 - MGP_CASTEiJ_P0079044 Chchd6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0010491.1 MGP_CASTEiJ_G0008679.1 mouse_genomes_project 6 106665317 106665397 + Gm25570 miRNA miRNA MGP_CASTEiJ_T0078234.1 MGP_CASTEiJ_G0029954.1 mouse_genomes_project 6 71492455 71497231 - Ptcd3 protein_coding retained_intron MGP_CASTEiJ_T0078235.1 MGP_CASTEiJ_G0029954.1 mouse_genomes_project 6 71492457 71523580 - MGP_CASTEiJ_P0078235 Ptcd3 protein_coding protein_coding MGP_CASTEiJ_T0078236.1 MGP_CASTEiJ_G0029954.1 mouse_genomes_project 6 71492458 71523580 - MGP_CASTEiJ_P0078236 Ptcd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078237.1 MGP_CASTEiJ_G0029954.1 mouse_genomes_project 6 71492460 71504525 - Ptcd3 protein_coding retained_intron MGP_CASTEiJ_T0078238.1 MGP_CASTEiJ_G0029954.1 mouse_genomes_project 6 71499737 71504450 - Ptcd3 protein_coding retained_intron MGP_CASTEiJ_T0078239.1 MGP_CASTEiJ_G0029954.1 mouse_genomes_project 6 71502096 71523574 - Ptcd3 protein_coding retained_intron MGP_CASTEiJ_T0078240.1 MGP_CASTEiJ_G0029954.1 mouse_genomes_project 6 71503456 71511989 - MGP_CASTEiJ_P0078240 Ptcd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078241.1 MGP_CASTEiJ_G0029954.1 mouse_genomes_project 6 71507816 71509971 - Ptcd3 protein_coding retained_intron MGP_CASTEiJ_T0078242.1 MGP_CASTEiJ_G0029954.1 mouse_genomes_project 6 71510129 71513277 - Ptcd3 protein_coding retained_intron MGP_CASTEiJ_T0078243.1 MGP_CASTEiJ_G0029954.1 mouse_genomes_project 6 71513233 71523548 - MGP_CASTEiJ_P0078243 Ptcd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078244.1 MGP_CASTEiJ_G0029954.1 mouse_genomes_project 6 71517519 71518305 - Ptcd3 protein_coding retained_intron MGP_CASTEiJ_T0010509.1 MGP_CASTEiJ_G0008697.1 mouse_genomes_project 6 127376771 127376902 - Mir8113 miRNA miRNA MGP_CASTEiJ_T0101209.1 MGP_CASTEiJ_G0038122.1 mouse_genomes_project 6 126150259 126150377 + Gm22916 snoRNA snoRNA MGP_CASTEiJ_T0077544.1 MGP_CASTEiJ_G0029786.1 mouse_genomes_project 6 45978111 45993447 + MGP_CASTEiJ_P0077544 Zfp212 protein_coding protein_coding MGP_CASTEiJ_T0077545.1 MGP_CASTEiJ_G0029786.1 mouse_genomes_project 6 45983929 45984770 + Zfp212 protein_coding retained_intron MGP_CASTEiJ_T0077451.1 MGP_CASTEiJ_G0029755.1 mouse_genomes_project 6 40357801 40358853 - MGP_CASTEiJ_P0077451 Olfr456 protein_coding protein_coding MGP_CASTEiJ_T0004900.1 MGP_CASTEiJ_G0004198.1 mouse_genomes_project 6 93674274 94018504 + antisense antisense MGP_CASTEiJ_T0004901.1 MGP_CASTEiJ_G0004198.1 mouse_genomes_project 6 93674314 94018414 + antisense antisense MGP_CASTEiJ_T0004902.1 MGP_CASTEiJ_G0004198.1 mouse_genomes_project 6 93674523 93847135 + antisense antisense MGP_CASTEiJ_T0004903.1 MGP_CASTEiJ_G0004198.1 mouse_genomes_project 6 93674527 94018502 + antisense antisense MGP_CASTEiJ_T0004904.1 MGP_CASTEiJ_G0004198.1 mouse_genomes_project 6 93674527 93884511 + antisense antisense MGP_CASTEiJ_T0004905.1 MGP_CASTEiJ_G0004198.1 mouse_genomes_project 6 93674527 93847417 + antisense antisense MGP_CASTEiJ_T0008395.1 MGP_CASTEiJ_G0006799.1 mouse_genomes_project 6 51638821 51642634 + Gm4872 lincRNA lincRNA MGP_CASTEiJ_T0080105.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124181346 124203196 - MGP_CASTEiJ_P0080105 Phc1 protein_coding protein_coding MGP_CASTEiJ_T0080106.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124181346 124203196 - MGP_CASTEiJ_P0080106 Phc1 protein_coding protein_coding MGP_CASTEiJ_T0080107.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124181353 124205839 - MGP_CASTEiJ_P0080107 Phc1 protein_coding protein_coding MGP_CASTEiJ_T0080108.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124181364 124205839 - MGP_CASTEiJ_P0080108 Phc1 protein_coding protein_coding MGP_CASTEiJ_T0080109.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124181365 124205050 - MGP_CASTEiJ_P0080109 Phc1 protein_coding protein_coding MGP_CASTEiJ_T0080110.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124181465 124205832 - MGP_CASTEiJ_P0080110 Phc1 protein_coding protein_coding MGP_CASTEiJ_T0080111.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124181909 124205781 - MGP_CASTEiJ_P0080111 Phc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0080112.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124181918 124205799 - Phc1 protein_coding retained_intron MGP_CASTEiJ_T0080113.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124181918 124205799 - MGP_CASTEiJ_P0080113 Phc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080114.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124181919 124207790 - MGP_CASTEiJ_P0080114 Phc1 protein_coding protein_coding MGP_CASTEiJ_T0080115.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124189171 124203100 - MGP_CASTEiJ_P0080115 Phc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080116.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124189563 124207735 - MGP_CASTEiJ_P0080116 Phc1 protein_coding protein_coding MGP_CASTEiJ_T0080117.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124198058 124200745 - Phc1 protein_coding retained_intron MGP_CASTEiJ_T0080118.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124198786 124207452 - MGP_CASTEiJ_P0080118 Phc1 protein_coding protein_coding MGP_CASTEiJ_T0080119.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124199733 124205839 - MGP_CASTEiJ_P0080119 Phc1 protein_coding protein_coding MGP_CASTEiJ_T0080120.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124199734 124203477 - MGP_CASTEiJ_P0080120 Phc1 protein_coding protein_coding MGP_CASTEiJ_T0080121.1 MGP_CASTEiJ_G0030312.1 mouse_genomes_project 6 124199738 124205814 - MGP_CASTEiJ_P0080121 Phc1 protein_coding protein_coding MGP_CASTEiJ_T0008382.1 MGP_CASTEiJ_G0006790.1 mouse_genomes_project 6 49659236 49673495 + Gm6559 lincRNA lincRNA MGP_CASTEiJ_T0081016.1 MGP_CASTEiJ_G0030529.1 mouse_genomes_project 6 144797729 144854567 - MGP_CASTEiJ_P0081016 Gm6614 protein_coding protein_coding MGP_CASTEiJ_T0081017.1 MGP_CASTEiJ_G0030529.1 mouse_genomes_project 6 144797729 144854567 - MGP_CASTEiJ_P0081017 Gm6614 protein_coding protein_coding MGP_CASTEiJ_T0081018.1 MGP_CASTEiJ_G0030529.1 mouse_genomes_project 6 144798083 144851896 - MGP_CASTEiJ_P0081018 Gm6614 protein_coding protein_coding MGP_CASTEiJ_T0080832.1 MGP_CASTEiJ_G0030494.1 mouse_genomes_project 6 138882184 138901201 - MGP_CASTEiJ_P0080832 E330021D16Rik protein_coding protein_coding MGP_CASTEiJ_T0080833.1 MGP_CASTEiJ_G0030494.1 mouse_genomes_project 6 138882762 138883878 - MGP_CASTEiJ_P0080833 E330021D16Rik protein_coding protein_coding MGP_CASTEiJ_T0080834.1 MGP_CASTEiJ_G0030494.1 mouse_genomes_project 6 138883542 138901196 - MGP_CASTEiJ_P0080834 E330021D16Rik protein_coding protein_coding MGP_CASTEiJ_T0078549.1 MGP_CASTEiJ_G0030019.1 mouse_genomes_project 6 83529446 83621530 - MGP_CASTEiJ_P0078549 Tet3 protein_coding protein_coding MGP_CASTEiJ_T0078550.1 MGP_CASTEiJ_G0030019.1 mouse_genomes_project 6 83529446 83606648 - MGP_CASTEiJ_P0078550 Tet3 protein_coding protein_coding MGP_CASTEiJ_T0078551.1 MGP_CASTEiJ_G0030019.1 mouse_genomes_project 6 83562103 83606749 - Tet3 protein_coding processed_transcript MGP_CASTEiJ_T0078552.1 MGP_CASTEiJ_G0030019.1 mouse_genomes_project 6 83568503 83624214 - MGP_CASTEiJ_P0078552 Tet3 protein_coding protein_coding MGP_CASTEiJ_T0078553.1 MGP_CASTEiJ_G0030019.1 mouse_genomes_project 6 83601937 83606703 - Tet3 protein_coding retained_intron MGP_CASTEiJ_T0002003.1 MGP_CASTEiJ_G0001924.1 mouse_genomes_project 6 89324072 89327196 - TEC TEC MGP_CASTEiJ_T0079698.1 MGP_CASTEiJ_G0030237.1 mouse_genomes_project 6 117093511 117103348 - MGP_CASTEiJ_P0079698 Mkrn2os protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079699.1 MGP_CASTEiJ_G0030237.1 mouse_genomes_project 6 117095089 117103375 - MGP_CASTEiJ_P0079699 Mkrn2os protein_coding protein_coding MGP_CASTEiJ_T0015036.1 MGP_CASTEiJ_G0013199.1 mouse_genomes_project 6 128539909 128540322 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101181.1 MGP_CASTEiJ_G0038094.1 mouse_genomes_project 6 68138012 68138145 + Gm25833 snoRNA snoRNA MGP_CASTEiJ_T0008315.1 MGP_CASTEiJ_G0006747.1 mouse_genomes_project 6 27325201 27336688 + Smkr-ps lincRNA lincRNA MGP_CASTEiJ_T0008316.1 MGP_CASTEiJ_G0006747.1 mouse_genomes_project 6 27325203 27336934 + Smkr-ps lincRNA lincRNA MGP_CASTEiJ_T0080965.1 MGP_CASTEiJ_G0030518.1 mouse_genomes_project 6 142719574 142772655 - MGP_CASTEiJ_P0080965 Plcz1 protein_coding protein_coding MGP_CASTEiJ_T0080966.1 MGP_CASTEiJ_G0030518.1 mouse_genomes_project 6 142719623 142772629 - MGP_CASTEiJ_P0080966 Plcz1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080967.1 MGP_CASTEiJ_G0030518.1 mouse_genomes_project 6 142719625 142772610 - MGP_CASTEiJ_P0080967 Plcz1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080968.1 MGP_CASTEiJ_G0030518.1 mouse_genomes_project 6 142750410 142772610 - MGP_CASTEiJ_P0080968 Plcz1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0102389.1 MGP_CASTEiJ_G0039114.1 mouse_genomes_project 6 55884872 55885231 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0078274.1 MGP_CASTEiJ_G0029961.1 mouse_genomes_project 6 72002112 72008275 + MGP_CASTEiJ_P0078274 Tmem150a protein_coding protein_coding MGP_CASTEiJ_T0078275.1 MGP_CASTEiJ_G0029961.1 mouse_genomes_project 6 72002112 72008275 + MGP_CASTEiJ_P0078275 Tmem150a protein_coding protein_coding MGP_CASTEiJ_T0078276.1 MGP_CASTEiJ_G0029961.1 mouse_genomes_project 6 72002139 72005121 + MGP_CASTEiJ_P0078276 Tmem150a protein_coding protein_coding MGP_CASTEiJ_T0078277.1 MGP_CASTEiJ_G0029961.1 mouse_genomes_project 6 72002839 72006054 + Tmem150a protein_coding processed_transcript MGP_CASTEiJ_T0078278.1 MGP_CASTEiJ_G0029961.1 mouse_genomes_project 6 72002936 72005472 + MGP_CASTEiJ_P0078278 Tmem150a protein_coding protein_coding MGP_CASTEiJ_T0010482.1 MGP_CASTEiJ_G0008670.1 mouse_genomes_project 6 86992859 86992921 - Gm22184 miRNA miRNA MGP_CASTEiJ_T0001867.1 MGP_CASTEiJ_G0001788.1 mouse_genomes_project 6 21836009 21838625 - TEC TEC MGP_CASTEiJ_T0002494.1 MGP_CASTEiJ_G0002403.1 mouse_genomes_project 6 39376820 39376871 + MGP_CASTEiJ_P0002494 Trbj2-2 TR_J_gene TR_J_gene MGP_CASTEiJ_T0080162.1 MGP_CASTEiJ_G0030321.1 mouse_genomes_project 6 124779041 124788750 - MGP_CASTEiJ_P0080162 C3ar1 protein_coding protein_coding MGP_CASTEiJ_T0101182.1 MGP_CASTEiJ_G0038095.1 mouse_genomes_project 6 70370358 70370494 + Gm23346 snoRNA snoRNA MGP_CASTEiJ_T0077785.1 MGP_CASTEiJ_G0029840.1 mouse_genomes_project 6 50553120 50555203 - MGP_CASTEiJ_P0077785 Hoxa4 protein_coding protein_coding MGP_CASTEiJ_T0080703.1 MGP_CASTEiJ_G0030446.1 mouse_genomes_project 6 133836258 133861890 - MGP_CASTEiJ_P0080703 Ybx3 protein_coding protein_coding MGP_CASTEiJ_T0080704.1 MGP_CASTEiJ_G0030446.1 mouse_genomes_project 6 133836258 133861852 - MGP_CASTEiJ_P0080704 Ybx3 protein_coding protein_coding MGP_CASTEiJ_T0080705.1 MGP_CASTEiJ_G0030446.1 mouse_genomes_project 6 133836493 133851695 - Ybx3 protein_coding processed_transcript MGP_CASTEiJ_T0080706.1 MGP_CASTEiJ_G0030446.1 mouse_genomes_project 6 133836503 133841382 - Ybx3 protein_coding retained_intron MGP_CASTEiJ_T0080707.1 MGP_CASTEiJ_G0030446.1 mouse_genomes_project 6 133848441 133851956 - Ybx3 protein_coding processed_transcript MGP_CASTEiJ_T0014818.1 MGP_CASTEiJ_G0012981.1 mouse_genomes_project 6 51126118 51126419 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011293.1 MGP_CASTEiJ_G0009481.1 mouse_genomes_project 6 14619292 14619424 + Gm27755 misc_RNA misc_RNA MGP_CASTEiJ_T0001853.1 MGP_CASTEiJ_G0001774.1 mouse_genomes_project 6 4190067 4192745 + TEC TEC MGP_CASTEiJ_T0079352.1 MGP_CASTEiJ_G0030178.1 mouse_genomes_project 6 104690675 104930023 + MGP_CASTEiJ_P0079352 Chl1 protein_coding protein_coding MGP_CASTEiJ_T0079353.1 MGP_CASTEiJ_G0030178.1 mouse_genomes_project 6 104691052 104826037 + Chl1 protein_coding retained_intron MGP_CASTEiJ_T0079354.1 MGP_CASTEiJ_G0030178.1 mouse_genomes_project 6 104691158 104910068 + MGP_CASTEiJ_P0079354 Chl1 protein_coding protein_coding MGP_CASTEiJ_T0079355.1 MGP_CASTEiJ_G0030178.1 mouse_genomes_project 6 104691263 104906462 + MGP_CASTEiJ_P0079355 Chl1 protein_coding protein_coding MGP_CASTEiJ_T0079356.1 MGP_CASTEiJ_G0030178.1 mouse_genomes_project 6 104691419 104845703 + MGP_CASTEiJ_P0079356 Chl1 protein_coding protein_coding MGP_CASTEiJ_T0079357.1 MGP_CASTEiJ_G0030178.1 mouse_genomes_project 6 104880614 104906819 + MGP_CASTEiJ_P0079357 Chl1 protein_coding protein_coding MGP_CASTEiJ_T0001928.1 MGP_CASTEiJ_G0001849.1 mouse_genomes_project 6 56403299 56406044 + TEC TEC MGP_CASTEiJ_T0008387.1 MGP_CASTEiJ_G0006794.1 mouse_genomes_project 6 50354629 50370725 + Gm44077 lincRNA lincRNA MGP_CASTEiJ_T0079931.1 MGP_CASTEiJ_G0030281.1 mouse_genomes_project 6 121150633 121168029 - MGP_CASTEiJ_P0079931 Wnt5b protein_coding protein_coding MGP_CASTEiJ_T0079932.1 MGP_CASTEiJ_G0030281.1 mouse_genomes_project 6 121150633 121272959 - MGP_CASTEiJ_P0079932 Wnt5b protein_coding protein_coding MGP_CASTEiJ_T0079933.1 MGP_CASTEiJ_G0030281.1 mouse_genomes_project 6 121150635 121186129 - MGP_CASTEiJ_P0079933 Wnt5b protein_coding protein_coding MGP_CASTEiJ_T0079934.1 MGP_CASTEiJ_G0030281.1 mouse_genomes_project 6 121150636 121272930 - MGP_CASTEiJ_P0079934 Wnt5b protein_coding protein_coding MGP_CASTEiJ_T0002065.1 MGP_CASTEiJ_G0001985.1 mouse_genomes_project 6 123042361 123043846 - TEC TEC MGP_CASTEiJ_T0077331.1 MGP_CASTEiJ_G0029706.1 mouse_genomes_project 6 38347268 38362511 + MGP_CASTEiJ_P0077331 Ssbp1 protein_coding protein_coding MGP_CASTEiJ_T0077332.1 MGP_CASTEiJ_G0029706.1 mouse_genomes_project 6 38347331 38355516 + MGP_CASTEiJ_P0077332 Ssbp1 protein_coding protein_coding MGP_CASTEiJ_T0077333.1 MGP_CASTEiJ_G0029706.1 mouse_genomes_project 6 38347369 38350279 + Ssbp1 protein_coding retained_intron MGP_CASTEiJ_T0077334.1 MGP_CASTEiJ_G0029706.1 mouse_genomes_project 6 38347384 38358823 + MGP_CASTEiJ_P0077334 Ssbp1 protein_coding protein_coding MGP_CASTEiJ_T0077335.1 MGP_CASTEiJ_G0029706.1 mouse_genomes_project 6 38347391 38358820 + MGP_CASTEiJ_P0077335 Ssbp1 protein_coding protein_coding MGP_CASTEiJ_T0077336.1 MGP_CASTEiJ_G0029706.1 mouse_genomes_project 6 38347442 38352520 + MGP_CASTEiJ_P0077336 Ssbp1 protein_coding protein_coding MGP_CASTEiJ_T0077337.1 MGP_CASTEiJ_G0029706.1 mouse_genomes_project 6 38352487 38354333 + Ssbp1 protein_coding retained_intron MGP_CASTEiJ_T0080435.1 MGP_CASTEiJ_G0030377.1 mouse_genomes_project 6 127456627 127467483 - MGP_CASTEiJ_P0080435 Ltbr protein_coding protein_coding MGP_CASTEiJ_T0080436.1 MGP_CASTEiJ_G0030377.1 mouse_genomes_project 6 127462525 127462979 - Ltbr protein_coding retained_intron MGP_CASTEiJ_T0080437.1 MGP_CASTEiJ_G0030377.1 mouse_genomes_project 6 127466332 127466865 - Ltbr protein_coding retained_intron MGP_CASTEiJ_T0079806.1 MGP_CASTEiJ_G0030255.1 mouse_genomes_project 6 118039155 118044109 + MGP_CASTEiJ_P0079806 Olfr211 protein_coding protein_coding MGP_CASTEiJ_T0079807.1 MGP_CASTEiJ_G0030255.1 mouse_genomes_project 6 118043179 118044109 + MGP_CASTEiJ_P0079807 Olfr211 protein_coding protein_coding MGP_CASTEiJ_T0002638.1 MGP_CASTEiJ_G0002528.1 mouse_genomes_project 6 38997607 38998078 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0008475.1 MGP_CASTEiJ_G0006862.1 mouse_genomes_project 6 102890624 102920248 + Gm9871 lincRNA lincRNA MGP_CASTEiJ_T0008476.1 MGP_CASTEiJ_G0006862.1 mouse_genomes_project 6 102899710 102920081 + Gm9871 lincRNA lincRNA MGP_CASTEiJ_T0008477.1 MGP_CASTEiJ_G0006862.1 mouse_genomes_project 6 102911634 102919876 + Gm9871 lincRNA lincRNA MGP_CASTEiJ_T0076719.1 MGP_CASTEiJ_G0029594.1 mouse_genomes_project 6 21772453 21780125 + MGP_CASTEiJ_P0076719 Lmod2 protein_coding protein_coding MGP_CASTEiJ_T0076720.1 MGP_CASTEiJ_G0029594.1 mouse_genomes_project 6 21772504 21788517 + MGP_CASTEiJ_P0076720 Lmod2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0011500.1 MGP_CASTEiJ_G0009666.1 mouse_genomes_project 6 40686025 40686961 + MGP_CASTEiJ_P0011500 Olfr451-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0076654.1 MGP_CASTEiJ_G0029579.1 mouse_genomes_project 6 19092457 19118562 + MGP_CASTEiJ_P0076654 Ing3 protein_coding protein_coding MGP_CASTEiJ_T0076655.1 MGP_CASTEiJ_G0029579.1 mouse_genomes_project 6 19092534 19117051 + Ing3 protein_coding retained_intron MGP_CASTEiJ_T0076656.1 MGP_CASTEiJ_G0029579.1 mouse_genomes_project 6 19092539 19116652 + MGP_CASTEiJ_P0076656 Ing3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076657.1 MGP_CASTEiJ_G0029579.1 mouse_genomes_project 6 19092542 19117424 + MGP_CASTEiJ_P0076657 Ing3 protein_coding protein_coding MGP_CASTEiJ_T0076658.1 MGP_CASTEiJ_G0029579.1 mouse_genomes_project 6 19092555 19112521 + MGP_CASTEiJ_P0076658 Ing3 protein_coding protein_coding MGP_CASTEiJ_T0076659.1 MGP_CASTEiJ_G0029579.1 mouse_genomes_project 6 19092570 19116247 + MGP_CASTEiJ_P0076659 Ing3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076660.1 MGP_CASTEiJ_G0029579.1 mouse_genomes_project 6 19092905 19110157 + MGP_CASTEiJ_P0076660 Ing3 protein_coding protein_coding MGP_CASTEiJ_T0076661.1 MGP_CASTEiJ_G0029579.1 mouse_genomes_project 6 19094940 19096847 + Ing3 protein_coding retained_intron MGP_CASTEiJ_T0004785.1 MGP_CASTEiJ_G0004118.1 mouse_genomes_project 6 28068384 28076722 + Gm13782 antisense antisense MGP_CASTEiJ_T0014951.1 MGP_CASTEiJ_G0013114.1 mouse_genomes_project 6 96817478 96818629 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078874.1 MGP_CASTEiJ_G0030083.1 mouse_genomes_project 6 88101640 88149985 - MGP_CASTEiJ_P0078874 Aplf protein_coding protein_coding MGP_CASTEiJ_T0078875.1 MGP_CASTEiJ_G0030083.1 mouse_genomes_project 6 88102430 88149902 - MGP_CASTEiJ_P0078875 Aplf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078876.1 MGP_CASTEiJ_G0030083.1 mouse_genomes_project 6 88102435 88150031 - MGP_CASTEiJ_P0078876 Aplf protein_coding protein_coding MGP_CASTEiJ_T0078877.1 MGP_CASTEiJ_G0030083.1 mouse_genomes_project 6 88126040 88149967 - Aplf protein_coding retained_intron MGP_CASTEiJ_T0079749.1 MGP_CASTEiJ_G0030247.1 mouse_genomes_project 6 117469176 117474467 + MGP_CASTEiJ_P0079749 H1foo protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079750.1 MGP_CASTEiJ_G0030247.1 mouse_genomes_project 6 117469176 117474472 + MGP_CASTEiJ_P0079750 H1foo protein_coding protein_coding MGP_CASTEiJ_T0079751.1 MGP_CASTEiJ_G0030247.1 mouse_genomes_project 6 117469176 117474467 + MGP_CASTEiJ_P0079751 H1foo protein_coding protein_coding MGP_CASTEiJ_T0079752.1 MGP_CASTEiJ_G0030247.1 mouse_genomes_project 6 117469191 117474157 + MGP_CASTEiJ_P0079752 H1foo protein_coding protein_coding MGP_CASTEiJ_T0079753.1 MGP_CASTEiJ_G0030247.1 mouse_genomes_project 6 117472991 117474461 + MGP_CASTEiJ_P0079753 H1foo protein_coding protein_coding MGP_CASTEiJ_T0004765.1 MGP_CASTEiJ_G0004105.1 mouse_genomes_project 6 3649741 3695915 - Dlx6os1 antisense antisense MGP_CASTEiJ_T0004766.1 MGP_CASTEiJ_G0004105.1 mouse_genomes_project 6 3650096 3705840 - Dlx6os1 antisense antisense MGP_CASTEiJ_T0077931.1 MGP_CASTEiJ_G0029875.1 mouse_genomes_project 6 54636768 54904992 - MGP_CASTEiJ_P0077931 Pde1c protein_coding protein_coding MGP_CASTEiJ_T0077932.1 MGP_CASTEiJ_G0029875.1 mouse_genomes_project 6 54638657 55103301 - MGP_CASTEiJ_P0077932 Pde1c protein_coding protein_coding MGP_CASTEiJ_T0077933.1 MGP_CASTEiJ_G0029875.1 mouse_genomes_project 6 54639267 54904455 - Pde1c protein_coding processed_transcript MGP_CASTEiJ_T0077934.1 MGP_CASTEiJ_G0029875.1 mouse_genomes_project 6 54644964 54905119 - MGP_CASTEiJ_P0077934 Pde1c protein_coding protein_coding MGP_CASTEiJ_T0077935.1 MGP_CASTEiJ_G0029875.1 mouse_genomes_project 6 54649025 54915290 - MGP_CASTEiJ_P0077935 Pde1c protein_coding protein_coding MGP_CASTEiJ_T0077936.1 MGP_CASTEiJ_G0029875.1 mouse_genomes_project 6 54649140 54690735 - MGP_CASTEiJ_P0077936 Pde1c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077937.1 MGP_CASTEiJ_G0029875.1 mouse_genomes_project 6 54649193 54915309 - MGP_CASTEiJ_P0077937 Pde1c protein_coding protein_coding MGP_CASTEiJ_T0077938.1 MGP_CASTEiJ_G0029875.1 mouse_genomes_project 6 54668226 54904911 - MGP_CASTEiJ_P0077938 Pde1c protein_coding protein_coding MGP_CASTEiJ_T0077939.1 MGP_CASTEiJ_G0029875.1 mouse_genomes_project 6 54671806 54915338 - MGP_CASTEiJ_P0077939 Pde1c protein_coding protein_coding MGP_CASTEiJ_T0077940.1 MGP_CASTEiJ_G0029875.1 mouse_genomes_project 6 54673506 54907114 - MGP_CASTEiJ_P0077940 Pde1c protein_coding protein_coding MGP_CASTEiJ_T0077941.1 MGP_CASTEiJ_G0029875.1 mouse_genomes_project 6 54673960 54904966 - MGP_CASTEiJ_P0077941 Pde1c protein_coding protein_coding MGP_CASTEiJ_T0077942.1 MGP_CASTEiJ_G0029875.1 mouse_genomes_project 6 54748450 54904974 - Pde1c protein_coding retained_intron MGP_CASTEiJ_T0077943.1 MGP_CASTEiJ_G0029875.1 mouse_genomes_project 6 54884476 54904913 - Pde1c protein_coding retained_intron MGP_CASTEiJ_T0077944.1 MGP_CASTEiJ_G0029875.1 mouse_genomes_project 6 54887682 54915311 - Pde1c protein_coding retained_intron MGP_CASTEiJ_T0010518.1 MGP_CASTEiJ_G0008706.1 mouse_genomes_project 6 140553317 140553431 - Gm24308 miRNA miRNA MGP_CASTEiJ_T0076680.1 MGP_CASTEiJ_G0029583.1 mouse_genomes_project 6 20051229 20248132 + MGP_CASTEiJ_P0076680 Ptprz1 protein_coding protein_coding MGP_CASTEiJ_T0076681.1 MGP_CASTEiJ_G0029583.1 mouse_genomes_project 6 20051443 20195831 + MGP_CASTEiJ_P0076681 Ptprz1 protein_coding protein_coding MGP_CASTEiJ_T0076682.1 MGP_CASTEiJ_G0029583.1 mouse_genomes_project 6 20051498 20247833 + MGP_CASTEiJ_P0076682 Ptprz1 protein_coding protein_coding MGP_CASTEiJ_T0076683.1 MGP_CASTEiJ_G0029583.1 mouse_genomes_project 6 20159540 20159975 + Ptprz1 protein_coding retained_intron MGP_CASTEiJ_T0076684.1 MGP_CASTEiJ_G0029583.1 mouse_genomes_project 6 20176990 20190555 + Ptprz1 protein_coding retained_intron MGP_CASTEiJ_T0076685.1 MGP_CASTEiJ_G0029583.1 mouse_genomes_project 6 20243541 20246750 + Ptprz1 protein_coding retained_intron MGP_CASTEiJ_T0077480.1 MGP_CASTEiJ_G0029771.1 mouse_genomes_project 6 41035415 41036451 + MGP_CASTEiJ_P0077480 protein_coding protein_coding MGP_CASTEiJ_T0078503.1 MGP_CASTEiJ_G0030012.1 mouse_genomes_project 6 83279284 83286256 - MGP_CASTEiJ_P0078503 Wdr54 protein_coding protein_coding MGP_CASTEiJ_T0078505.1 MGP_CASTEiJ_G0030012.1 mouse_genomes_project 6 83282630 83286079 - Wdr54 protein_coding retained_intron MGP_CASTEiJ_T0078506.1 MGP_CASTEiJ_G0030012.1 mouse_genomes_project 6 83282634 83286224 - Wdr54 protein_coding retained_intron MGP_CASTEiJ_T0078507.1 MGP_CASTEiJ_G0030012.1 mouse_genomes_project 6 83283174 83286124 - Wdr54 protein_coding processed_transcript MGP_CASTEiJ_T0078508.1 MGP_CASTEiJ_G0030012.1 mouse_genomes_project 6 83284417 83286256 - MGP_CASTEiJ_P0078508 Wdr54 protein_coding protein_coding MGP_CASTEiJ_T0078509.1 MGP_CASTEiJ_G0030012.1 mouse_genomes_project 6 83285075 83286238 - Wdr54 protein_coding processed_transcript MGP_CASTEiJ_T0077806.1 MGP_CASTEiJ_G0029848.1 mouse_genomes_project 6 50688799 50693685 + MGP_CASTEiJ_P0077806 Evx1 protein_coding protein_coding MGP_CASTEiJ_T0077807.1 MGP_CASTEiJ_G0029848.1 mouse_genomes_project 6 50688853 50691955 + MGP_CASTEiJ_P0077807 Evx1 protein_coding protein_coding MGP_CASTEiJ_T0002496.1 MGP_CASTEiJ_G0002405.1 mouse_genomes_project 6 39377225 39377274 + MGP_CASTEiJ_P0002496 Trbj2-4 TR_J_gene TR_J_gene MGP_CASTEiJ_T0078016.1 MGP_CASTEiJ_G0029907.1 mouse_genomes_project 6 56931354 56932407 - MGP_CASTEiJ_P0078016 Vmn1r25 protein_coding protein_coding MGP_CASTEiJ_T0008325.1 MGP_CASTEiJ_G0006754.1 mouse_genomes_project 6 28497749 28499496 + Gm13833 lincRNA lincRNA MGP_CASTEiJ_T0079411.1 MGP_CASTEiJ_G0030188.1 mouse_genomes_project 6 109982254 109988565 + MGP_CASTEiJ_P0079411 Bhlhe40 protein_coding protein_coding MGP_CASTEiJ_T0079412.1 MGP_CASTEiJ_G0030188.1 mouse_genomes_project 6 109982424 109982960 + Bhlhe40 protein_coding retained_intron MGP_CASTEiJ_T0079413.1 MGP_CASTEiJ_G0030188.1 mouse_genomes_project 6 109982499 109984329 + MGP_CASTEiJ_P0079413 Bhlhe40 protein_coding protein_coding MGP_CASTEiJ_T0079414.1 MGP_CASTEiJ_G0030188.1 mouse_genomes_project 6 109984676 109987305 + Bhlhe40 protein_coding retained_intron MGP_CASTEiJ_T0001880.1 MGP_CASTEiJ_G0001801.1 mouse_genomes_project 6 28691837 28694565 + TEC TEC MGP_CASTEiJ_T0008464.1 MGP_CASTEiJ_G0006854.1 mouse_genomes_project 6 99487452 99505257 - Gm44197 lincRNA lincRNA MGP_CASTEiJ_T0102387.1 MGP_CASTEiJ_G0039112.1 mouse_genomes_project 6 41074635 41075156 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0079057.1 MGP_CASTEiJ_G0030118.1 mouse_genomes_project 6 90832733 90833855 - MGP_CASTEiJ_P0079057 Vmn1r53 protein_coding protein_coding MGP_CASTEiJ_T0077466.1 MGP_CASTEiJ_G0029760.1 mouse_genomes_project 6 40632314 40633268 + MGP_CASTEiJ_P0077466 Olfr453 protein_coding protein_coding MGP_CASTEiJ_T0078990.1 MGP_CASTEiJ_G0030103.1 mouse_genomes_project 6 89383321 89384484 - Podxl2 protein_coding processed_transcript MGP_CASTEiJ_T0078991.1 MGP_CASTEiJ_G0030103.1 mouse_genomes_project 6 89383530 89417077 - MGP_CASTEiJ_P0078991 Podxl2 protein_coding protein_coding MGP_CASTEiJ_T0078992.1 MGP_CASTEiJ_G0030103.1 mouse_genomes_project 6 89384301 89386681 - Podxl2 protein_coding retained_intron MGP_CASTEiJ_T0078993.1 MGP_CASTEiJ_G0030103.1 mouse_genomes_project 6 89384939 89390408 - Podxl2 protein_coding processed_transcript MGP_CASTEiJ_T0078994.1 MGP_CASTEiJ_G0030103.1 mouse_genomes_project 6 89387987 89389870 - Podxl2 protein_coding retained_intron MGP_CASTEiJ_T0078995.1 MGP_CASTEiJ_G0030103.1 mouse_genomes_project 6 89390709 89416836 - MGP_CASTEiJ_P0078995 Podxl2 protein_coding protein_coding MGP_CASTEiJ_T0078996.1 MGP_CASTEiJ_G0030103.1 mouse_genomes_project 6 89390709 89416894 - MGP_CASTEiJ_P0078996 Podxl2 protein_coding protein_coding MGP_CASTEiJ_T0078997.1 MGP_CASTEiJ_G0030103.1 mouse_genomes_project 6 89390844 89407037 - Podxl2 protein_coding processed_transcript MGP_CASTEiJ_T0078998.1 MGP_CASTEiJ_G0030103.1 mouse_genomes_project 6 89406040 89417087 - Podxl2 protein_coding retained_intron MGP_CASTEiJ_T0078999.1 MGP_CASTEiJ_G0030103.1 mouse_genomes_project 6 89406581 89416474 - Podxl2 protein_coding retained_intron MGP_CASTEiJ_T0079637.1 MGP_CASTEiJ_G0030228.1 mouse_genomes_project 6 115985577 116074312 + MGP_CASTEiJ_P0079637 Hrh1 protein_coding protein_coding MGP_CASTEiJ_T0079638.1 MGP_CASTEiJ_G0030228.1 mouse_genomes_project 6 115985727 116070879 + MGP_CASTEiJ_P0079638 Hrh1 protein_coding protein_coding MGP_CASTEiJ_T0079639.1 MGP_CASTEiJ_G0030228.1 mouse_genomes_project 6 115991303 116073482 + MGP_CASTEiJ_P0079639 Hrh1 protein_coding protein_coding MGP_CASTEiJ_T0079640.1 MGP_CASTEiJ_G0030228.1 mouse_genomes_project 6 115991456 116073416 + MGP_CASTEiJ_P0079640 Hrh1 protein_coding protein_coding MGP_CASTEiJ_T0079641.1 MGP_CASTEiJ_G0030228.1 mouse_genomes_project 6 116047662 116073480 + MGP_CASTEiJ_P0079641 Hrh1 protein_coding protein_coding MGP_CASTEiJ_T0010501.1 MGP_CASTEiJ_G0008689.1 mouse_genomes_project 6 120077068 120077151 + Gm25953 miRNA miRNA MGP_CASTEiJ_T0080824.1 MGP_CASTEiJ_G0030493.1 mouse_genomes_project 6 138148335 138626007 - MGP_CASTEiJ_P0080824 Grin2b protein_coding protein_coding MGP_CASTEiJ_T0080825.1 MGP_CASTEiJ_G0030493.1 mouse_genomes_project 6 138165159 138629638 - MGP_CASTEiJ_P0080825 Grin2b protein_coding protein_coding MGP_CASTEiJ_T0080826.1 MGP_CASTEiJ_G0030493.1 mouse_genomes_project 6 138166854 138487487 - MGP_CASTEiJ_P0080826 Grin2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0080827.1 MGP_CASTEiJ_G0030493.1 mouse_genomes_project 6 138307900 138629638 - MGP_CASTEiJ_P0080827 Grin2b protein_coding protein_coding MGP_CASTEiJ_T0080828.1 MGP_CASTEiJ_G0030493.1 mouse_genomes_project 6 138487266 138624773 - MGP_CASTEiJ_P0080828 Grin2b protein_coding protein_coding MGP_CASTEiJ_T0080829.1 MGP_CASTEiJ_G0030493.1 mouse_genomes_project 6 138487269 138629638 - MGP_CASTEiJ_P0080829 Grin2b protein_coding protein_coding MGP_CASTEiJ_T0080830.1 MGP_CASTEiJ_G0030493.1 mouse_genomes_project 6 138487269 138629638 - MGP_CASTEiJ_P0080830 Grin2b protein_coding protein_coding MGP_CASTEiJ_T0080831.1 MGP_CASTEiJ_G0030493.1 mouse_genomes_project 6 138624646 138627159 - Grin2b protein_coding processed_transcript MGP_CASTEiJ_T0004949.1 MGP_CASTEiJ_G0004233.1 mouse_genomes_project 6 129054708 129057498 + Gm42574 antisense antisense MGP_CASTEiJ_T0002077.1 MGP_CASTEiJ_G0001997.1 mouse_genomes_project 6 130508058 130509499 - TEC TEC MGP_CASTEiJ_T0076690.1 MGP_CASTEiJ_G0029585.1 mouse_genomes_project 6 20452928 20458479 - MGP_CASTEiJ_P0076690 Fezf1 protein_coding protein_coding MGP_CASTEiJ_T0015087.1 MGP_CASTEiJ_G0013250.1 mouse_genomes_project 6 143562608 143562802 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014936.1 MGP_CASTEiJ_G0013099.1 mouse_genomes_project 6 92251972 92252367 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014877.1 MGP_CASTEiJ_G0013040.1 mouse_genomes_project 6 67153450 67153621 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080477.1 MGP_CASTEiJ_G0030387.1 mouse_genomes_project 6 128932150 128965649 - MGP_CASTEiJ_P0080477 Kcna6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080478.1 MGP_CASTEiJ_G0030387.1 mouse_genomes_project 6 128932152 128961798 - Kcna6 protein_coding processed_transcript MGP_CASTEiJ_T0080479.1 MGP_CASTEiJ_G0030387.1 mouse_genomes_project 6 128932153 128965661 - MGP_CASTEiJ_P0080479 Kcna6 protein_coding protein_coding MGP_CASTEiJ_T0080480.1 MGP_CASTEiJ_G0030387.1 mouse_genomes_project 6 128961674 128965138 - MGP_CASTEiJ_P0080480 Kcna6 protein_coding protein_coding MGP_CASTEiJ_T0098770.1 MGP_CASTEiJ_G0035701.1 mouse_genomes_project 6 127251065 127251201 + Gm23751 scaRNA scaRNA MGP_CASTEiJ_T0099944.1 MGP_CASTEiJ_G0036857.1 mouse_genomes_project 6 30543560 30543664 - Gm22321 snRNA snRNA MGP_CASTEiJ_T0098626.1 MGP_CASTEiJ_G0035557.1 mouse_genomes_project 6 20826038 20826171 - Gm24217 rRNA rRNA MGP_CASTEiJ_T0080710.1 MGP_CASTEiJ_G0030448.1 mouse_genomes_project 6 134118427 134119517 - MGP_CASTEiJ_P0080710 Tas2r130 protein_coding protein_coding MGP_CASTEiJ_T0099983.1 MGP_CASTEiJ_G0036896.1 mouse_genomes_project 6 132385143 132385218 + Gm24676 snRNA snRNA MGP_CASTEiJ_T0080361.1 MGP_CASTEiJ_G0030364.1 mouse_genomes_project 6 127158909 127168950 + MGP_CASTEiJ_P0080361 Ing4 protein_coding protein_coding MGP_CASTEiJ_T0080362.1 MGP_CASTEiJ_G0030364.1 mouse_genomes_project 6 127158985 127166123 + Ing4 protein_coding retained_intron MGP_CASTEiJ_T0080363.1 MGP_CASTEiJ_G0030364.1 mouse_genomes_project 6 127158985 127169212 + MGP_CASTEiJ_P0080363 Ing4 protein_coding protein_coding MGP_CASTEiJ_T0080364.1 MGP_CASTEiJ_G0030364.1 mouse_genomes_project 6 127158997 127167516 + Ing4 protein_coding retained_intron MGP_CASTEiJ_T0080365.1 MGP_CASTEiJ_G0030364.1 mouse_genomes_project 6 127159010 127168756 + Ing4 protein_coding retained_intron MGP_CASTEiJ_T0080366.1 MGP_CASTEiJ_G0030364.1 mouse_genomes_project 6 127159010 127169213 + MGP_CASTEiJ_P0080366 Ing4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080367.1 MGP_CASTEiJ_G0030364.1 mouse_genomes_project 6 127162882 127167954 + Ing4 protein_coding retained_intron MGP_CASTEiJ_T0080368.1 MGP_CASTEiJ_G0030364.1 mouse_genomes_project 6 127165459 127169213 + Ing4 protein_coding retained_intron MGP_CASTEiJ_T0080369.1 MGP_CASTEiJ_G0030364.1 mouse_genomes_project 6 127167583 127168566 + Ing4 protein_coding retained_intron MGP_CASTEiJ_T0004845.1 MGP_CASTEiJ_G0004165.1 mouse_genomes_project 6 72375292 72381172 + Gm15402 antisense antisense MGP_CASTEiJ_T0080078.1 MGP_CASTEiJ_G0030304.1 mouse_genomes_project 6 123208079 123230300 + MGP_CASTEiJ_P0080078 Slc6a12 protein_coding protein_coding MGP_CASTEiJ_T0080079.1 MGP_CASTEiJ_G0030304.1 mouse_genomes_project 6 123208402 123212624 + MGP_CASTEiJ_P0080079 Slc6a12 protein_coding protein_coding MGP_CASTEiJ_T0080080.1 MGP_CASTEiJ_G0030304.1 mouse_genomes_project 6 123211632 123230703 + MGP_CASTEiJ_P0080080 Slc6a12 protein_coding protein_coding MGP_CASTEiJ_T0080081.1 MGP_CASTEiJ_G0030304.1 mouse_genomes_project 6 123212435 123220323 + MGP_CASTEiJ_P0080081 Slc6a12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080082.1 MGP_CASTEiJ_G0030304.1 mouse_genomes_project 6 123212435 123230300 + MGP_CASTEiJ_P0080082 Slc6a12 protein_coding protein_coding MGP_CASTEiJ_T0080083.1 MGP_CASTEiJ_G0030304.1 mouse_genomes_project 6 123221808 123226913 + Slc6a12 protein_coding retained_intron MGP_CASTEiJ_T0080084.1 MGP_CASTEiJ_G0030304.1 mouse_genomes_project 6 123221821 123228330 + Slc6a12 protein_coding retained_intron MGP_CASTEiJ_T0080085.1 MGP_CASTEiJ_G0030304.1 mouse_genomes_project 6 123221906 123230300 + MGP_CASTEiJ_P0080085 Slc6a12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080086.1 MGP_CASTEiJ_G0030304.1 mouse_genomes_project 6 123221906 123230300 + MGP_CASTEiJ_P0080086 Slc6a12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080087.1 MGP_CASTEiJ_G0030304.1 mouse_genomes_project 6 123223972 123228860 + Slc6a12 protein_coding retained_intron MGP_CASTEiJ_T0102369.1 MGP_CASTEiJ_G0039094.1 mouse_genomes_project 6 6854141 6854822 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000046.1 MGP_CASTEiJ_G0000039.1 mouse_genomes_project 6 70234822 70234865 + Igkj2 IG_J_gene processed_transcript MGP_CASTEiJ_T0000047.1 MGP_CASTEiJ_G0000039.1 mouse_genomes_project 6 70234822 70234861 + MGP_CASTEiJ_P0000047 Igkj2 IG_J_gene IG_J_gene MGP_CASTEiJ_T0002418.1 MGP_CASTEiJ_G0002334.1 mouse_genomes_project 6 39372142 39382214 + MGP_CASTEiJ_P0002418 Trbc2 TR_C_gene TR_C_gene MGP_CASTEiJ_T0076745.1 MGP_CASTEiJ_G0029603.1 mouse_genomes_project 6 24436822 25364173 - MGP_CASTEiJ_P0076745 Grm8 protein_coding protein_coding MGP_CASTEiJ_T0076746.1 MGP_CASTEiJ_G0029603.1 mouse_genomes_project 6 24436832 25355732 - MGP_CASTEiJ_P0076746 Grm8 protein_coding protein_coding MGP_CASTEiJ_T0076747.1 MGP_CASTEiJ_G0029603.1 mouse_genomes_project 6 24437315 25355802 - MGP_CASTEiJ_P0076747 Grm8 protein_coding protein_coding MGP_CASTEiJ_T0076748.1 MGP_CASTEiJ_G0029603.1 mouse_genomes_project 6 24817399 25364789 - MGP_CASTEiJ_P0076748 Grm8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076749.1 MGP_CASTEiJ_G0029603.1 mouse_genomes_project 6 24965403 25362965 - MGP_CASTEiJ_P0076749 Grm8 protein_coding protein_coding MGP_CASTEiJ_T0076750.1 MGP_CASTEiJ_G0029603.1 mouse_genomes_project 6 25150378 25364806 - Grm8 protein_coding processed_transcript MGP_CASTEiJ_T0076751.1 MGP_CASTEiJ_G0029603.1 mouse_genomes_project 6 25355670 25362769 - MGP_CASTEiJ_P0076751 Grm8 protein_coding protein_coding MGP_CASTEiJ_T0076752.1 MGP_CASTEiJ_G0029603.1 mouse_genomes_project 6 25361665 25364013 - Grm8 protein_coding processed_transcript MGP_CASTEiJ_T0001961.1 MGP_CASTEiJ_G0001882.1 mouse_genomes_project 6 80002845 80005490 + TEC TEC MGP_CASTEiJ_T0000199.1 MGP_CASTEiJ_G0000150.1 mouse_genomes_project 6 69505967 69515924 - MGP_CASTEiJ_P0000199 Igkv8-34 IG_V_gene IG_V_gene MGP_CASTEiJ_T0014828.1 MGP_CASTEiJ_G0012991.1 mouse_genomes_project 6 56645574 56646755 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079237.1 MGP_CASTEiJ_G0030153.1 mouse_genomes_project 6 95992844 95999069 + MGP_CASTEiJ_P0079237 Kbtbd8 protein_coding protein_coding MGP_CASTEiJ_T0079238.1 MGP_CASTEiJ_G0030153.1 mouse_genomes_project 6 95993552 96008121 + MGP_CASTEiJ_P0079238 Kbtbd8 protein_coding protein_coding MGP_CASTEiJ_T0079239.1 MGP_CASTEiJ_G0030153.1 mouse_genomes_project 6 95993577 95998976 + Kbtbd8 protein_coding processed_transcript MGP_CASTEiJ_T0076625.1 MGP_CASTEiJ_G0029573.1 mouse_genomes_project 6 15117231 15286183 + MGP_CASTEiJ_P0076625 Cftr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076626.1 MGP_CASTEiJ_G0029573.1 mouse_genomes_project 6 15117231 15286184 + MGP_CASTEiJ_P0076626 Cftr protein_coding protein_coding MGP_CASTEiJ_T0076627.1 MGP_CASTEiJ_G0029573.1 mouse_genomes_project 6 15117231 15286183 + MGP_CASTEiJ_P0076627 Cftr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076628.1 MGP_CASTEiJ_G0029573.1 mouse_genomes_project 6 15117315 15192569 + MGP_CASTEiJ_P0076628 Cftr protein_coding protein_coding MGP_CASTEiJ_T0076629.1 MGP_CASTEiJ_G0029573.1 mouse_genomes_project 6 15117368 15284444 + MGP_CASTEiJ_P0076629 Cftr protein_coding protein_coding MGP_CASTEiJ_T0076630.1 MGP_CASTEiJ_G0029573.1 mouse_genomes_project 6 15214485 15225719 + Cftr protein_coding retained_intron MGP_CASTEiJ_T0001940.1 MGP_CASTEiJ_G0001861.1 mouse_genomes_project 6 71435510 71436132 - TEC TEC MGP_CASTEiJ_T0077008.1 MGP_CASTEiJ_G0029646.1 mouse_genomes_project 6 28809351 28935889 + MGP_CASTEiJ_P0077008 Mkln1 protein_coding protein_coding MGP_CASTEiJ_T0077009.1 MGP_CASTEiJ_G0029646.1 mouse_genomes_project 6 28809444 28889104 + Mkln1 protein_coding retained_intron MGP_CASTEiJ_T0077010.1 MGP_CASTEiJ_G0029646.1 mouse_genomes_project 6 28809445 28851217 + Mkln1 protein_coding retained_intron MGP_CASTEiJ_T0077011.1 MGP_CASTEiJ_G0029646.1 mouse_genomes_project 6 28809452 28831594 + Mkln1 protein_coding retained_intron MGP_CASTEiJ_T0077012.1 MGP_CASTEiJ_G0029646.1 mouse_genomes_project 6 28809461 28842971 + Mkln1 protein_coding retained_intron MGP_CASTEiJ_T0077013.1 MGP_CASTEiJ_G0029646.1 mouse_genomes_project 6 28809461 28816683 + Mkln1 protein_coding retained_intron MGP_CASTEiJ_T0077014.1 MGP_CASTEiJ_G0029646.1 mouse_genomes_project 6 28809475 28848331 + Mkln1 protein_coding processed_transcript MGP_CASTEiJ_T0077015.1 MGP_CASTEiJ_G0029646.1 mouse_genomes_project 6 28842785 28908647 + Mkln1 protein_coding processed_transcript MGP_CASTEiJ_T0077016.1 MGP_CASTEiJ_G0029646.1 mouse_genomes_project 6 28842819 28892604 + Mkln1 protein_coding processed_transcript MGP_CASTEiJ_T0077017.1 MGP_CASTEiJ_G0029646.1 mouse_genomes_project 6 28886368 28911743 + Mkln1 protein_coding retained_intron MGP_CASTEiJ_T0077018.1 MGP_CASTEiJ_G0029646.1 mouse_genomes_project 6 28895117 28899788 + Mkln1 protein_coding retained_intron MGP_CASTEiJ_T0077019.1 MGP_CASTEiJ_G0029646.1 mouse_genomes_project 6 28908629 28927029 + MGP_CASTEiJ_P0077019 Mkln1 protein_coding protein_coding MGP_CASTEiJ_T0077020.1 MGP_CASTEiJ_G0029646.1 mouse_genomes_project 6 28911670 28926908 + Mkln1 protein_coding retained_intron MGP_CASTEiJ_T0010505.1 MGP_CASTEiJ_G0008693.1 mouse_genomes_project 6 126817517 126817589 - Mir141 miRNA miRNA MGP_CASTEiJ_T0001868.1 MGP_CASTEiJ_G0001789.1 mouse_genomes_project 6 24620451 24624190 - TEC TEC MGP_CASTEiJ_T0076734.1 MGP_CASTEiJ_G0029600.1 mouse_genomes_project 6 22129879 22135042 - MGP_CASTEiJ_P0076734 Tmem229a protein_coding protein_coding MGP_CASTEiJ_T0076850.1 MGP_CASTEiJ_G0029624.1 mouse_genomes_project 6 26776781 26791445 - Kcp protein_coding retained_intron MGP_CASTEiJ_T0076851.1 MGP_CASTEiJ_G0029624.1 mouse_genomes_project 6 26789311 26815199 - MGP_CASTEiJ_P0076851 Kcp protein_coding protein_coding MGP_CASTEiJ_T0076852.1 MGP_CASTEiJ_G0029624.1 mouse_genomes_project 6 26789315 26803137 - MGP_CASTEiJ_P0076852 Kcp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076853.1 MGP_CASTEiJ_G0029624.1 mouse_genomes_project 6 26789315 26792169 - MGP_CASTEiJ_P0076853 Kcp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076854.1 MGP_CASTEiJ_G0029624.1 mouse_genomes_project 6 26789315 26815210 - MGP_CASTEiJ_P0076854 Kcp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076855.1 MGP_CASTEiJ_G0029624.1 mouse_genomes_project 6 26790993 26792281 - Kcp protein_coding retained_intron MGP_CASTEiJ_T0076856.1 MGP_CASTEiJ_G0029624.1 mouse_genomes_project 6 26804068 26805829 - Kcp protein_coding retained_intron MGP_CASTEiJ_T0076857.1 MGP_CASTEiJ_G0029624.1 mouse_genomes_project 6 26805153 26810056 - MGP_CASTEiJ_P0076857 Kcp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076858.1 MGP_CASTEiJ_G0029624.1 mouse_genomes_project 6 26809506 26815225 - MGP_CASTEiJ_P0076858 Kcp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078014.1 MGP_CASTEiJ_G0029905.1 mouse_genomes_project 6 56749966 56751065 - MGP_CASTEiJ_P0078014 Vmn1r19 protein_coding protein_coding MGP_CASTEiJ_T0001861.1 MGP_CASTEiJ_G0001782.1 mouse_genomes_project 6 14860006 14865536 + TEC TEC MGP_CASTEiJ_T0001859.1 MGP_CASTEiJ_G0001780.1 mouse_genomes_project 6 14648498 14650989 + TEC TEC MGP_CASTEiJ_T0077478.1 MGP_CASTEiJ_G0029769.1 mouse_genomes_project 6 40980663 41036375 + MGP_CASTEiJ_P0077478 protein_coding protein_coding MGP_CASTEiJ_T0077481.1 MGP_CASTEiJ_G0029769.1 mouse_genomes_project 6 41035456 41036375 + MGP_CASTEiJ_P0077481 protein_coding protein_coding MGP_CASTEiJ_T0004798.1 MGP_CASTEiJ_G0004129.1 mouse_genomes_project 6 36684195 36752986 - Gm42962 antisense antisense MGP_CASTEiJ_T0078554.1 MGP_CASTEiJ_G0030020.1 mouse_genomes_project 6 83647646 83675514 - MGP_CASTEiJ_P0078554 Dguok protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078555.1 MGP_CASTEiJ_G0030020.1 mouse_genomes_project 6 83647736 83675492 - MGP_CASTEiJ_P0078555 Dguok protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078556.1 MGP_CASTEiJ_G0030020.1 mouse_genomes_project 6 83647837 83675610 - MGP_CASTEiJ_P0078556 Dguok protein_coding protein_coding MGP_CASTEiJ_T0078557.1 MGP_CASTEiJ_G0030020.1 mouse_genomes_project 6 83648292 83662406 - Dguok protein_coding processed_transcript MGP_CASTEiJ_T0078558.1 MGP_CASTEiJ_G0030020.1 mouse_genomes_project 6 83648640 83654401 - Dguok protein_coding processed_transcript MGP_CASTEiJ_T0078559.1 MGP_CASTEiJ_G0030020.1 mouse_genomes_project 6 83655369 83657824 - Dguok protein_coding retained_intron MGP_CASTEiJ_T0078560.1 MGP_CASTEiJ_G0030020.1 mouse_genomes_project 6 83657611 83675578 - Dguok protein_coding retained_intron MGP_CASTEiJ_T0078135.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66628964 66665963 + Serbp1 protein_coding processed_transcript MGP_CASTEiJ_T0078136.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66661328 66693157 + MGP_CASTEiJ_P0078136 Serbp1 protein_coding protein_coding MGP_CASTEiJ_T0078137.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66661686 66679464 + MGP_CASTEiJ_P0078137 Serbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0078138.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66661688 66679770 + MGP_CASTEiJ_P0078138 Serbp1 protein_coding protein_coding MGP_CASTEiJ_T0078139.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66661693 66664051 + Serbp1 protein_coding retained_intron MGP_CASTEiJ_T0078140.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66661710 66679530 + MGP_CASTEiJ_P0078140 Serbp1 protein_coding protein_coding MGP_CASTEiJ_T0078141.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66661715 66679513 + MGP_CASTEiJ_P0078141 Serbp1 protein_coding protein_coding MGP_CASTEiJ_T0078142.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66661716 66668703 + Serbp1 protein_coding retained_intron MGP_CASTEiJ_T0078143.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66661716 66679775 + MGP_CASTEiJ_P0078143 Serbp1 protein_coding protein_coding MGP_CASTEiJ_T0078144.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66661716 66679513 + MGP_CASTEiJ_P0078144 Serbp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078145.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66661721 66669346 + Serbp1 protein_coding retained_intron MGP_CASTEiJ_T0078146.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66661743 66672503 + MGP_CASTEiJ_P0078146 Serbp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078147.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66661776 66679480 + MGP_CASTEiJ_P0078147 Serbp1 protein_coding protein_coding MGP_CASTEiJ_T0078148.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66661784 66666931 + Serbp1 protein_coding retained_intron MGP_CASTEiJ_T0078149.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66661962 66667548 + MGP_CASTEiJ_P0078149 Serbp1 protein_coding protein_coding MGP_CASTEiJ_T0078150.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66662035 66676469 + MGP_CASTEiJ_P0078150 Serbp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078151.1 MGP_CASTEiJ_G0029933.1 mouse_genomes_project 6 66666569 66676486 + Serbp1 protein_coding retained_intron MGP_CASTEiJ_T0000163.1 MGP_CASTEiJ_G0000125.1 mouse_genomes_project 6 68122902 68123368 + MGP_CASTEiJ_P0000163 Igkv14-100 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000164.1 MGP_CASTEiJ_G0000125.1 mouse_genomes_project 6 68122902 68123368 + MGP_CASTEiJ_P0000164 Igkv14-100 IG_V_gene IG_V_gene MGP_CASTEiJ_T0102401.1 MGP_CASTEiJ_G0039126.1 mouse_genomes_project 6 57005056 57005956 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011288.1 MGP_CASTEiJ_G0009476.1 mouse_genomes_project 6 3650495 3650675 + Gm27699 misc_RNA misc_RNA MGP_CASTEiJ_T0101206.1 MGP_CASTEiJ_G0038119.1 mouse_genomes_project 6 125797887 125798004 - Gm23079 snoRNA snoRNA MGP_CASTEiJ_T0017478.1 MGP_CASTEiJ_G0014939.1 mouse_genomes_project 6 27254 33504 - processed_transcript retained_intron MGP_CASTEiJ_T0002022.1 MGP_CASTEiJ_G0001943.1 mouse_genomes_project 6 93986691 93989166 + TEC TEC MGP_CASTEiJ_T0077308.1 MGP_CASTEiJ_G0029701.1 mouse_genomes_project 6 37647055 37657967 - MGP_CASTEiJ_P0077308 Mrps33 protein_coding protein_coding MGP_CASTEiJ_T0077309.1 MGP_CASTEiJ_G0029701.1 mouse_genomes_project 6 37647443 37657864 - MGP_CASTEiJ_P0077309 Mrps33 protein_coding protein_coding MGP_CASTEiJ_T0077310.1 MGP_CASTEiJ_G0029701.1 mouse_genomes_project 6 37647635 37653249 - MGP_CASTEiJ_P0077310 Mrps33 protein_coding protein_coding MGP_CASTEiJ_T0077311.1 MGP_CASTEiJ_G0029701.1 mouse_genomes_project 6 37652441 37657872 - Mrps33 protein_coding retained_intron MGP_CASTEiJ_T0077296.1 MGP_CASTEiJ_G0029698.1 mouse_genomes_project 6 37403942 37417311 + MGP_CASTEiJ_P0077296 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0008351.1 MGP_CASTEiJ_G0006771.1 mouse_genomes_project 6 32914609 32920631 + 1700065J11Rik lincRNA lincRNA MGP_CASTEiJ_T0079270.1 MGP_CASTEiJ_G0030163.1 mouse_genomes_project 6 98123451 98139954 - MGP_CASTEiJ_P0079270 Lmod3 protein_coding protein_coding MGP_CASTEiJ_T0077689.1 MGP_CASTEiJ_G0029819.1 mouse_genomes_project 6 47223495 47357984 - MGP_CASTEiJ_P0077689 Igf2bp3 protein_coding protein_coding MGP_CASTEiJ_T0077690.1 MGP_CASTEiJ_G0029819.1 mouse_genomes_project 6 47226413 47232505 - Igf2bp3 protein_coding retained_intron MGP_CASTEiJ_T0077691.1 MGP_CASTEiJ_G0029819.1 mouse_genomes_project 6 47231392 47357190 - Igf2bp3 protein_coding retained_intron MGP_CASTEiJ_T0077692.1 MGP_CASTEiJ_G0029819.1 mouse_genomes_project 6 47245800 47249335 - Igf2bp3 protein_coding processed_transcript MGP_CASTEiJ_T0077693.1 MGP_CASTEiJ_G0029819.1 mouse_genomes_project 6 47306555 47357735 - Igf2bp3 protein_coding processed_transcript MGP_CASTEiJ_T0014740.1 MGP_CASTEiJ_G0012903.1 mouse_genomes_project 6 15770751 15771015 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080680.1 MGP_CASTEiJ_G0030437.1 mouse_genomes_project 6 132183848 132196672 - MGP_CASTEiJ_P0080680 Klrc1 protein_coding protein_coding MGP_CASTEiJ_T0080681.1 MGP_CASTEiJ_G0030437.1 mouse_genomes_project 6 132192927 132196638 - MGP_CASTEiJ_P0080681 Klrc1 protein_coding protein_coding MGP_CASTEiJ_T0080682.1 MGP_CASTEiJ_G0030437.1 mouse_genomes_project 6 132192927 132196672 - MGP_CASTEiJ_P0080682 Klrc1 protein_coding protein_coding MGP_CASTEiJ_T0080473.1 MGP_CASTEiJ_G0030385.1 mouse_genomes_project 6 128744963 128747835 - MGP_CASTEiJ_P0080473 Kcna5 protein_coding protein_coding MGP_CASTEiJ_T0002056.1 MGP_CASTEiJ_G0001977.1 mouse_genomes_project 6 117459918 117460757 - TEC TEC MGP_CASTEiJ_T0078201.1 MGP_CASTEiJ_G0029950.1 mouse_genomes_project 6 71162034 71206673 - MGP_CASTEiJ_P0078201 Kdm3a protein_coding protein_coding MGP_CASTEiJ_T0078202.1 MGP_CASTEiJ_G0029950.1 mouse_genomes_project 6 71162036 71206454 - MGP_CASTEiJ_P0078202 Kdm3a protein_coding protein_coding MGP_CASTEiJ_T0078203.1 MGP_CASTEiJ_G0029950.1 mouse_genomes_project 6 71162099 71206758 - MGP_CASTEiJ_P0078203 Kdm3a protein_coding protein_coding MGP_CASTEiJ_T0078204.1 MGP_CASTEiJ_G0029950.1 mouse_genomes_project 6 71163189 71165009 - Kdm3a protein_coding retained_intron MGP_CASTEiJ_T0078205.1 MGP_CASTEiJ_G0029950.1 mouse_genomes_project 6 71163618 71165648 - Kdm3a protein_coding retained_intron MGP_CASTEiJ_T0078206.1 MGP_CASTEiJ_G0029950.1 mouse_genomes_project 6 71164583 71206081 - MGP_CASTEiJ_P0078206 Kdm3a protein_coding unknown_likely_coding MGP_CASTEiJ_T0078207.1 MGP_CASTEiJ_G0029950.1 mouse_genomes_project 6 71167043 71170244 - Kdm3a protein_coding retained_intron MGP_CASTEiJ_T0078208.1 MGP_CASTEiJ_G0029950.1 mouse_genomes_project 6 71167688 71182873 - Kdm3a protein_coding processed_transcript MGP_CASTEiJ_T0078209.1 MGP_CASTEiJ_G0029950.1 mouse_genomes_project 6 71170033 71172470 - Kdm3a protein_coding retained_intron MGP_CASTEiJ_T0078210.1 MGP_CASTEiJ_G0029950.1 mouse_genomes_project 6 71172376 71206454 - MGP_CASTEiJ_P0078210 Kdm3a protein_coding protein_coding MGP_CASTEiJ_T0078211.1 MGP_CASTEiJ_G0029950.1 mouse_genomes_project 6 71172477 71174205 - Kdm3a protein_coding retained_intron MGP_CASTEiJ_T0078212.1 MGP_CASTEiJ_G0029950.1 mouse_genomes_project 6 71173772 71185735 - MGP_CASTEiJ_P0078212 Kdm3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078213.1 MGP_CASTEiJ_G0029950.1 mouse_genomes_project 6 71175791 71195454 - Kdm3a protein_coding retained_intron MGP_CASTEiJ_T0078214.1 MGP_CASTEiJ_G0029950.1 mouse_genomes_project 6 71176180 71177029 - Kdm3a protein_coding processed_transcript MGP_CASTEiJ_T0078215.1 MGP_CASTEiJ_G0029950.1 mouse_genomes_project 6 71185476 71195177 - Kdm3a protein_coding processed_transcript MGP_CASTEiJ_T0102429.1 MGP_CASTEiJ_G0039154.1 mouse_genomes_project 6 133456319 133538397 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000300.1 MGP_CASTEiJ_G0000249.1 mouse_genomes_project 6 70064297 70064599 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0014955.1 MGP_CASTEiJ_G0013118.1 mouse_genomes_project 6 99716787 99717067 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017543.1 MGP_CASTEiJ_G0014957.1 mouse_genomes_project 6 72279246 72285221 + Gm20536 processed_transcript processed_transcript MGP_CASTEiJ_T0014891.1 MGP_CASTEiJ_G0013054.1 mouse_genomes_project 6 71709290 71709791 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011305.1 MGP_CASTEiJ_G0009493.1 mouse_genomes_project 6 28136434 28136533 + Gm27568 misc_RNA misc_RNA MGP_CASTEiJ_T0008364.1 MGP_CASTEiJ_G0006776.1 mouse_genomes_project 6 38924546 38932999 + 5830405F06Rik lincRNA lincRNA MGP_CASTEiJ_T0008365.1 MGP_CASTEiJ_G0006776.1 mouse_genomes_project 6 38924547 38931041 + 5830405F06Rik lincRNA lincRNA MGP_CASTEiJ_T0080708.1 MGP_CASTEiJ_G0030447.1 mouse_genomes_project 6 133971978 133985636 + MGP_CASTEiJ_P0080708 protein_coding protein_coding MGP_CASTEiJ_T0080709.1 MGP_CASTEiJ_G0030447.1 mouse_genomes_project 6 133981463 133985642 + MGP_CASTEiJ_P0080709 protein_coding protein_coding MGP_CASTEiJ_T0077364.1 MGP_CASTEiJ_G0029723.1 mouse_genomes_project 6 39201653 39207180 - MGP_CASTEiJ_P0077364 Try5 protein_coding protein_coding MGP_CASTEiJ_T0077365.1 MGP_CASTEiJ_G0029723.1 mouse_genomes_project 6 39201661 39205189 - MGP_CASTEiJ_P0077365 Try5 protein_coding protein_coding MGP_CASTEiJ_T0080624.1 MGP_CASTEiJ_G0030422.1 mouse_genomes_project 6 131750018 131758499 - MGP_CASTEiJ_P0080624 Cd69 protein_coding protein_coding MGP_CASTEiJ_T0080625.1 MGP_CASTEiJ_G0030422.1 mouse_genomes_project 6 131750952 131758429 - MGP_CASTEiJ_P0080625 Cd69 protein_coding protein_coding MGP_CASTEiJ_T0080626.1 MGP_CASTEiJ_G0030422.1 mouse_genomes_project 6 131752143 131758432 - Cd69 protein_coding retained_intron MGP_CASTEiJ_T0080627.1 MGP_CASTEiJ_G0030422.1 mouse_genomes_project 6 131753101 131758432 - Cd69 protein_coding retained_intron MGP_CASTEiJ_T0080628.1 MGP_CASTEiJ_G0030422.1 mouse_genomes_project 6 131754186 131758432 - Cd69 protein_coding retained_intron MGP_CASTEiJ_T0017560.1 MGP_CASTEiJ_G0014964.1 mouse_genomes_project 6 127158965 127171504 + Gm44597 processed_transcript retained_intron MGP_CASTEiJ_T0017561.1 MGP_CASTEiJ_G0014964.1 mouse_genomes_project 6 127158994 127171461 + Gm44597 processed_transcript retained_intron MGP_CASTEiJ_T0002076.1 MGP_CASTEiJ_G0001996.1 mouse_genomes_project 6 130111400 130114162 - TEC TEC MGP_CASTEiJ_T0080418.1 MGP_CASTEiJ_G0030372.1 mouse_genomes_project 6 127327291 127329961 + Mrpl51 protein_coding processed_transcript MGP_CASTEiJ_T0080419.1 MGP_CASTEiJ_G0030372.1 mouse_genomes_project 6 127327655 127332692 + MGP_CASTEiJ_P0080419 Mrpl51 protein_coding protein_coding MGP_CASTEiJ_T0080420.1 MGP_CASTEiJ_G0030372.1 mouse_genomes_project 6 127327707 127328369 + Mrpl51 protein_coding retained_intron MGP_CASTEiJ_T0008363.1 MGP_CASTEiJ_G0006775.1 mouse_genomes_project 6 37022546 37024994 + Gm43479 lincRNA lincRNA MGP_CASTEiJ_T0078807.1 MGP_CASTEiJ_G0030068.1 mouse_genomes_project 6 87072629 87094531 - MGP_CASTEiJ_P0078807 Mxd1 protein_coding protein_coding MGP_CASTEiJ_T0078808.1 MGP_CASTEiJ_G0030068.1 mouse_genomes_project 6 87074597 87088503 - MGP_CASTEiJ_P0078808 Mxd1 protein_coding protein_coding MGP_CASTEiJ_T0078809.1 MGP_CASTEiJ_G0030068.1 mouse_genomes_project 6 87076376 87094470 - MGP_CASTEiJ_P0078809 Mxd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078810.1 MGP_CASTEiJ_G0030068.1 mouse_genomes_project 6 87091570 87094487 - Mxd1 protein_coding retained_intron MGP_CASTEiJ_T0002017.1 MGP_CASTEiJ_G0001938.1 mouse_genomes_project 6 92554164 92555207 - TEC TEC MGP_CASTEiJ_T0008290.1 MGP_CASTEiJ_G0006730.1 mouse_genomes_project 6 3440427 3517356 - Gm20618 lincRNA lincRNA MGP_CASTEiJ_T0008291.1 MGP_CASTEiJ_G0006730.1 mouse_genomes_project 6 3471023 3524490 - Gm20618 lincRNA lincRNA MGP_CASTEiJ_T0001920.1 MGP_CASTEiJ_G0001841.1 mouse_genomes_project 6 51116834 51117446 - TEC TEC MGP_CASTEiJ_T0014921.1 MGP_CASTEiJ_G0013084.1 mouse_genomes_project 6 85347772 85347914 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099941.1 MGP_CASTEiJ_G0036854.1 mouse_genomes_project 6 26379634 26379800 - Gm25589 snRNA snRNA MGP_CASTEiJ_T0014975.1 MGP_CASTEiJ_G0013138.1 mouse_genomes_project 6 109193228 109193824 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002080.1 MGP_CASTEiJ_G0002000.1 mouse_genomes_project 6 131489631 131489826 - TEC TEC MGP_CASTEiJ_T0014746.1 MGP_CASTEiJ_G0012909.1 mouse_genomes_project 6 19827011 19827792 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014867.1 MGP_CASTEiJ_G0013030.1 mouse_genomes_project 6 66384775 66385162 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078708.1 MGP_CASTEiJ_G0030048.1 mouse_genomes_project 6 86138513 86150831 - MGP_CASTEiJ_P0078708 protein_coding protein_coding MGP_CASTEiJ_T0078711.1 MGP_CASTEiJ_G0030048.1 mouse_genomes_project 6 86139027 86140410 - MGP_CASTEiJ_P0078711 protein_coding protein_coding MGP_CASTEiJ_T0011314.1 MGP_CASTEiJ_G0009502.1 mouse_genomes_project 6 50612618 50612805 + Gm27492 misc_RNA misc_RNA MGP_CASTEiJ_T0080148.1 MGP_CASTEiJ_G0030317.1 mouse_genomes_project 6 124506838 124511614 - MGP_CASTEiJ_P0080148 Gdf3 protein_coding protein_coding MGP_CASTEiJ_T0080149.1 MGP_CASTEiJ_G0030317.1 mouse_genomes_project 6 124509554 124511351 - Gdf3 protein_coding processed_transcript MGP_CASTEiJ_T0102421.1 MGP_CASTEiJ_G0039146.1 mouse_genomes_project 6 126203075 126259130 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102386.1 MGP_CASTEiJ_G0039111.1 mouse_genomes_project 6 41017945 41018252 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101177.1 MGP_CASTEiJ_G0038090.1 mouse_genomes_project 6 67199193 67199331 - snoRNA snoRNA MGP_CASTEiJ_T0080428.1 MGP_CASTEiJ_G0030375.1 mouse_genomes_project 6 127374725 127380902 - MGP_CASTEiJ_P0080428 Cd27 protein_coding protein_coding MGP_CASTEiJ_T0080429.1 MGP_CASTEiJ_G0030375.1 mouse_genomes_project 6 127375240 127380886 - MGP_CASTEiJ_P0080429 Cd27 protein_coding protein_coding MGP_CASTEiJ_T0080430.1 MGP_CASTEiJ_G0030375.1 mouse_genomes_project 6 127375311 127380845 - MGP_CASTEiJ_P0080430 Cd27 protein_coding protein_coding MGP_CASTEiJ_T0080431.1 MGP_CASTEiJ_G0030375.1 mouse_genomes_project 6 127375645 127376906 - Cd27 protein_coding retained_intron MGP_CASTEiJ_T0080432.1 MGP_CASTEiJ_G0030375.1 mouse_genomes_project 6 127375781 127376764 - Cd27 protein_coding retained_intron MGP_CASTEiJ_T0080433.1 MGP_CASTEiJ_G0030375.1 mouse_genomes_project 6 127379996 127380895 - Cd27 protein_coding retained_intron MGP_CASTEiJ_T0008342.1 MGP_CASTEiJ_G0006764.1 mouse_genomes_project 6 29545654 29546738 + Gm13850 lincRNA lincRNA MGP_CASTEiJ_T0101165.1 MGP_CASTEiJ_G0038078.1 mouse_genomes_project 6 41780618 41780749 + Gm22939 snoRNA snoRNA MGP_CASTEiJ_T0077430.1 MGP_CASTEiJ_G0029748.1 mouse_genomes_project 6 40212028 40213547 + MGP_CASTEiJ_P0077430 Zyx protein_coding protein_coding MGP_CASTEiJ_T0077431.1 MGP_CASTEiJ_G0029748.1 mouse_genomes_project 6 40212178 40214006 + MGP_CASTEiJ_P0077431 Zyx protein_coding protein_coding MGP_CASTEiJ_T0077432.1 MGP_CASTEiJ_G0029748.1 mouse_genomes_project 6 40212226 40220863 + MGP_CASTEiJ_P0077432 Zyx protein_coding protein_coding MGP_CASTEiJ_T0077433.1 MGP_CASTEiJ_G0029748.1 mouse_genomes_project 6 40212267 40220694 + MGP_CASTEiJ_P0077433 Zyx protein_coding protein_coding MGP_CASTEiJ_T0077434.1 MGP_CASTEiJ_G0029748.1 mouse_genomes_project 6 40212431 40220694 + Zyx protein_coding retained_intron MGP_CASTEiJ_T0077435.1 MGP_CASTEiJ_G0029748.1 mouse_genomes_project 6 40212431 40220694 + MGP_CASTEiJ_P0077435 Zyx protein_coding protein_coding MGP_CASTEiJ_T0077436.1 MGP_CASTEiJ_G0029748.1 mouse_genomes_project 6 40212436 40214163 + Zyx protein_coding processed_transcript MGP_CASTEiJ_T0077437.1 MGP_CASTEiJ_G0029748.1 mouse_genomes_project 6 40212437 40222514 + MGP_CASTEiJ_P0077437 Zyx protein_coding protein_coding MGP_CASTEiJ_T0077438.1 MGP_CASTEiJ_G0029748.1 mouse_genomes_project 6 40212469 40213463 + MGP_CASTEiJ_P0077438 Zyx protein_coding protein_coding MGP_CASTEiJ_T0077439.1 MGP_CASTEiJ_G0029748.1 mouse_genomes_project 6 40215822 40218336 + Zyx protein_coding processed_transcript MGP_CASTEiJ_T0077440.1 MGP_CASTEiJ_G0029748.1 mouse_genomes_project 6 40217451 40218560 + Zyx protein_coding processed_transcript MGP_CASTEiJ_T0011303.1 MGP_CASTEiJ_G0009491.1 mouse_genomes_project 6 27497249 27497576 - Gm25580 misc_RNA misc_RNA MGP_CASTEiJ_T0002067.1 MGP_CASTEiJ_G0001987.1 mouse_genomes_project 6 126468431 126471747 - TEC TEC MGP_CASTEiJ_T0080093.1 MGP_CASTEiJ_G0030306.1 mouse_genomes_project 6 123512190 123514997 + MGP_CASTEiJ_P0080093 A2m protein_coding protein_coding MGP_CASTEiJ_T0080094.1 MGP_CASTEiJ_G0030306.1 mouse_genomes_project 6 123513042 123551538 + MGP_CASTEiJ_P0080094 A2m protein_coding protein_coding MGP_CASTEiJ_T0080095.1 MGP_CASTEiJ_G0030306.1 mouse_genomes_project 6 123530880 123533458 + A2m protein_coding retained_intron MGP_CASTEiJ_T0076507.1 MGP_CASTEiJ_G0029555.1 mouse_genomes_project 6 9873142 9878478 + MGP_CASTEiJ_P0076507 Tmem106b protein_coding protein_coding MGP_CASTEiJ_T0076508.1 MGP_CASTEiJ_G0029555.1 mouse_genomes_project 6 9873199 9875337 + MGP_CASTEiJ_P0076508 Tmem106b protein_coding protein_coding MGP_CASTEiJ_T0076509.1 MGP_CASTEiJ_G0029555.1 mouse_genomes_project 6 9873222 9894359 + MGP_CASTEiJ_P0076509 Tmem106b protein_coding protein_coding MGP_CASTEiJ_T0076510.1 MGP_CASTEiJ_G0029555.1 mouse_genomes_project 6 9873234 9878769 + Tmem106b protein_coding retained_intron MGP_CASTEiJ_T0076511.1 MGP_CASTEiJ_G0029555.1 mouse_genomes_project 6 9873237 9879751 + Tmem106b protein_coding processed_transcript MGP_CASTEiJ_T0076512.1 MGP_CASTEiJ_G0029555.1 mouse_genomes_project 6 9873634 9886131 + MGP_CASTEiJ_P0076512 Tmem106b protein_coding protein_coding MGP_CASTEiJ_T0004913.1 MGP_CASTEiJ_G0004204.1 mouse_genomes_project 6 103418715 103458998 + Gm44188 antisense antisense MGP_CASTEiJ_T0004914.1 MGP_CASTEiJ_G0004204.1 mouse_genomes_project 6 103418737 103491604 + Gm44188 antisense antisense MGP_CASTEiJ_T0004777.1 MGP_CASTEiJ_G0004111.1 mouse_genomes_project 6 15227713 15249621 - Gm15592 antisense antisense MGP_CASTEiJ_T0001973.1 MGP_CASTEiJ_G0001894.1 mouse_genomes_project 6 83467808 83470605 - TEC TEC MGP_CASTEiJ_T0010473.1 MGP_CASTEiJ_G0008661.1 mouse_genomes_project 6 54742691 54742795 - Gm44413 miRNA miRNA MGP_CASTEiJ_T0080685.1 MGP_CASTEiJ_G0030440.1 mouse_genomes_project 6 132300656 132310889 - MGP_CASTEiJ_P0080685 Gm156 protein_coding protein_coding MGP_CASTEiJ_T0080686.1 MGP_CASTEiJ_G0030440.1 mouse_genomes_project 6 132300664 132314412 - MGP_CASTEiJ_P0080686 Gm156 protein_coding protein_coding MGP_CASTEiJ_T0080721.1 MGP_CASTEiJ_G0030458.1 mouse_genomes_project 6 135177612 135178646 - MGP_CASTEiJ_P0080721 Tas2r115 protein_coding protein_coding MGP_CASTEiJ_T0014822.1 MGP_CASTEiJ_G0012985.1 mouse_genomes_project 6 52217577 52218341 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078476.1 MGP_CASTEiJ_G0030006.1 mouse_genomes_project 6 83230921 83238951 + MGP_CASTEiJ_P0078476 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077051.1 MGP_CASTEiJ_G0029652.1 mouse_genomes_project 6 31513357 31626051 + MGP_CASTEiJ_P0077051 Lrguk protein_coding protein_coding MGP_CASTEiJ_T0077052.1 MGP_CASTEiJ_G0029652.1 mouse_genomes_project 6 31513359 31533484 + MGP_CASTEiJ_P0077052 Lrguk protein_coding protein_coding MGP_CASTEiJ_T0077053.1 MGP_CASTEiJ_G0029652.1 mouse_genomes_project 6 31513393 31592242 + MGP_CASTEiJ_P0077053 Lrguk protein_coding unknown_likely_coding MGP_CASTEiJ_T0077054.1 MGP_CASTEiJ_G0029652.1 mouse_genomes_project 6 31524090 31533499 + MGP_CASTEiJ_P0077054 Lrguk protein_coding protein_coding MGP_CASTEiJ_T0014792.1 MGP_CASTEiJ_G0012955.1 mouse_genomes_project 6 45047525 45050204 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099975.1 MGP_CASTEiJ_G0036888.1 mouse_genomes_project 6 114543489 114543595 + Gm22591 snRNA snRNA MGP_CASTEiJ_T0014770.1 MGP_CASTEiJ_G0012933.1 mouse_genomes_project 6 35335814 35339578 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080195.1 MGP_CASTEiJ_G0030333.1 mouse_genomes_project 6 125738652 125808751 + MGP_CASTEiJ_P0080195 Vmn2r24 protein_coding protein_coding MGP_CASTEiJ_T0014751.1 MGP_CASTEiJ_G0012914.1 mouse_genomes_project 6 21768233 21768958 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079659.1 MGP_CASTEiJ_G0030230.1 mouse_genomes_project 6 116319336 116332600 - Vgll4 protein_coding processed_transcript MGP_CASTEiJ_T0079660.1 MGP_CASTEiJ_G0030230.1 mouse_genomes_project 6 116320147 116389264 - MGP_CASTEiJ_P0079660 Vgll4 protein_coding protein_coding MGP_CASTEiJ_T0079661.1 MGP_CASTEiJ_G0030230.1 mouse_genomes_project 6 116320915 116332513 - Vgll4 protein_coding processed_transcript MGP_CASTEiJ_T0079662.1 MGP_CASTEiJ_G0030230.1 mouse_genomes_project 6 116320915 116323468 - Vgll4 protein_coding processed_transcript MGP_CASTEiJ_T0079663.1 MGP_CASTEiJ_G0030230.1 mouse_genomes_project 6 116321045 116437281 - MGP_CASTEiJ_P0079663 Vgll4 protein_coding protein_coding MGP_CASTEiJ_T0079664.1 MGP_CASTEiJ_G0030230.1 mouse_genomes_project 6 116321488 116438095 - MGP_CASTEiJ_P0079664 Vgll4 protein_coding protein_coding MGP_CASTEiJ_T0079665.1 MGP_CASTEiJ_G0030230.1 mouse_genomes_project 6 116387496 116389259 - Vgll4 protein_coding retained_intron MGP_CASTEiJ_T0079172.1 MGP_CASTEiJ_G0030140.1 mouse_genomes_project 6 92580782 92582685 + 4930590J08Rik protein_coding retained_intron MGP_CASTEiJ_T0079173.1 MGP_CASTEiJ_G0030140.1 mouse_genomes_project 6 92582205 92630604 + MGP_CASTEiJ_P0079173 4930590J08Rik protein_coding protein_coding MGP_CASTEiJ_T0079174.1 MGP_CASTEiJ_G0030140.1 mouse_genomes_project 6 92594051 92630520 + MGP_CASTEiJ_P0079174 4930590J08Rik protein_coding protein_coding MGP_CASTEiJ_T0079175.1 MGP_CASTEiJ_G0030140.1 mouse_genomes_project 6 92624115 92629910 + MGP_CASTEiJ_P0079175 4930590J08Rik protein_coding protein_coding MGP_CASTEiJ_T0000184.1 MGP_CASTEiJ_G0000139.1 mouse_genomes_project 6 69083364 69083897 - MGP_CASTEiJ_P0000184 Igkv4-86 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000268.1 MGP_CASTEiJ_G0000217.1 mouse_genomes_project 6 67401630 67402104 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0080689.1 MGP_CASTEiJ_G0030442.1 mouse_genomes_project 6 132643681 132654592 + protein_coding retained_intron MGP_CASTEiJ_T0078901.1 MGP_CASTEiJ_G0030089.1 mouse_genomes_project 6 88329458 88338689 - MGP_CASTEiJ_P0078901 Cnbp protein_coding protein_coding MGP_CASTEiJ_T0078902.1 MGP_CASTEiJ_G0030089.1 mouse_genomes_project 6 88329458 88338689 - MGP_CASTEiJ_P0078902 Cnbp protein_coding protein_coding MGP_CASTEiJ_T0078903.1 MGP_CASTEiJ_G0030089.1 mouse_genomes_project 6 88329925 88338663 - MGP_CASTEiJ_P0078903 Cnbp protein_coding protein_coding MGP_CASTEiJ_T0078904.1 MGP_CASTEiJ_G0030089.1 mouse_genomes_project 6 88329925 88338613 - MGP_CASTEiJ_P0078904 Cnbp protein_coding protein_coding MGP_CASTEiJ_T0078905.1 MGP_CASTEiJ_G0030089.1 mouse_genomes_project 6 88331232 88338643 - MGP_CASTEiJ_P0078905 Cnbp protein_coding protein_coding MGP_CASTEiJ_T0078906.1 MGP_CASTEiJ_G0030089.1 mouse_genomes_project 6 88331264 88338610 - Cnbp protein_coding retained_intron MGP_CASTEiJ_T0078907.1 MGP_CASTEiJ_G0030089.1 mouse_genomes_project 6 88331284 88338605 - Cnbp protein_coding retained_intron MGP_CASTEiJ_T0078908.1 MGP_CASTEiJ_G0030089.1 mouse_genomes_project 6 88331345 88338642 - Cnbp protein_coding retained_intron MGP_CASTEiJ_T0078909.1 MGP_CASTEiJ_G0030089.1 mouse_genomes_project 6 88333125 88333903 - Cnbp protein_coding retained_intron MGP_CASTEiJ_T0078383.1 MGP_CASTEiJ_G0029987.1 mouse_genomes_project 6 79763672 79764123 + MGP_CASTEiJ_P0078383 Gm20594 protein_coding protein_coding MGP_CASTEiJ_T0080184.1 MGP_CASTEiJ_G0030330.1 mouse_genomes_project 6 125165664 125178419 + MGP_CASTEiJ_P0080184 Clec4d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080185.1 MGP_CASTEiJ_G0030330.1 mouse_genomes_project 6 125165670 125178761 + MGP_CASTEiJ_P0080185 Clec4d protein_coding protein_coding MGP_CASTEiJ_T0080186.1 MGP_CASTEiJ_G0030330.1 mouse_genomes_project 6 125171290 125178208 + Clec4d protein_coding retained_intron MGP_CASTEiJ_T0077260.1 MGP_CASTEiJ_G0029692.1 mouse_genomes_project 6 36915326 36989067 - MGP_CASTEiJ_P0077260 Kdm7a protein_coding protein_coding MGP_CASTEiJ_T0077261.1 MGP_CASTEiJ_G0029692.1 mouse_genomes_project 6 36920590 36933817 - Kdm7a protein_coding processed_transcript MGP_CASTEiJ_T0077073.1 MGP_CASTEiJ_G0029657.1 mouse_genomes_project 6 31936193 31946947 + MGP_CASTEiJ_P0077073 Akr1b7 protein_coding protein_coding MGP_CASTEiJ_T0079252.1 MGP_CASTEiJ_G0030159.1 mouse_genomes_project 6 97985031 98027376 - MGP_CASTEiJ_P0079252 Eogt protein_coding protein_coding MGP_CASTEiJ_T0079253.1 MGP_CASTEiJ_G0030159.1 mouse_genomes_project 6 97986989 98027077 - Eogt protein_coding processed_transcript MGP_CASTEiJ_T0079254.1 MGP_CASTEiJ_G0030159.1 mouse_genomes_project 6 97987018 98027121 - MGP_CASTEiJ_P0079254 Eogt protein_coding protein_coding MGP_CASTEiJ_T0079255.1 MGP_CASTEiJ_G0030159.1 mouse_genomes_project 6 97987203 97993710 - Eogt protein_coding processed_transcript MGP_CASTEiJ_T0079256.1 MGP_CASTEiJ_G0030159.1 mouse_genomes_project 6 98014813 98025978 - MGP_CASTEiJ_P0079256 Eogt protein_coding protein_coding MGP_CASTEiJ_T0079257.1 MGP_CASTEiJ_G0030159.1 mouse_genomes_project 6 98022178 98025988 - MGP_CASTEiJ_P0079257 Eogt protein_coding protein_coding MGP_CASTEiJ_T0079258.1 MGP_CASTEiJ_G0030159.1 mouse_genomes_project 6 98023469 98027054 - MGP_CASTEiJ_P0079258 Eogt protein_coding protein_coding MGP_CASTEiJ_T0079259.1 MGP_CASTEiJ_G0030159.1 mouse_genomes_project 6 98023523 98027118 - MGP_CASTEiJ_P0079259 Eogt protein_coding protein_coding MGP_CASTEiJ_T0101644.1 MGP_CASTEiJ_G0038489.1 mouse_genomes_project 6 83770657 83771426 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0001921.1 MGP_CASTEiJ_G0001842.1 mouse_genomes_project 6 52102382 52105821 + TEC TEC MGP_CASTEiJ_T0014717.1 MGP_CASTEiJ_G0012880.1 mouse_genomes_project 6 4657552 4657742 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004930.1 MGP_CASTEiJ_G0004215.1 mouse_genomes_project 6 115492812 115495283 + Gm15082 antisense antisense MGP_CASTEiJ_T0008344.1 MGP_CASTEiJ_G0006766.1 mouse_genomes_project 6 31474384 31475450 - lincRNA lincRNA MGP_CASTEiJ_T0077408.1 MGP_CASTEiJ_G0029745.1 mouse_genomes_project 6 40126229 40143779 + MGP_CASTEiJ_P0077408 Casp2 protein_coding protein_coding MGP_CASTEiJ_T0077409.1 MGP_CASTEiJ_G0029745.1 mouse_genomes_project 6 40126300 40130370 + Casp2 protein_coding retained_intron MGP_CASTEiJ_T0077410.1 MGP_CASTEiJ_G0029745.1 mouse_genomes_project 6 40126364 40141756 + MGP_CASTEiJ_P0077410 Casp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077411.1 MGP_CASTEiJ_G0029745.1 mouse_genomes_project 6 40128635 40129275 + Casp2 protein_coding processed_transcript MGP_CASTEiJ_T0077412.1 MGP_CASTEiJ_G0029745.1 mouse_genomes_project 6 40129254 40130856 + Casp2 protein_coding retained_intron MGP_CASTEiJ_T0077413.1 MGP_CASTEiJ_G0029745.1 mouse_genomes_project 6 40130533 40141161 + Casp2 protein_coding processed_transcript MGP_CASTEiJ_T0077414.1 MGP_CASTEiJ_G0029745.1 mouse_genomes_project 6 40137763 40141797 + Casp2 protein_coding retained_intron MGP_CASTEiJ_T0077415.1 MGP_CASTEiJ_G0029745.1 mouse_genomes_project 6 40140901 40141754 + Casp2 protein_coding processed_transcript MGP_CASTEiJ_T0077416.1 MGP_CASTEiJ_G0029745.1 mouse_genomes_project 6 40141044 40141905 + Casp2 protein_coding processed_transcript MGP_CASTEiJ_T0077417.1 MGP_CASTEiJ_G0029745.1 mouse_genomes_project 6 40141070 40142031 + Casp2 protein_coding processed_transcript MGP_CASTEiJ_T0099958.1 MGP_CASTEiJ_G0036871.1 mouse_genomes_project 6 70568515 70568670 - Gm23485 snRNA snRNA MGP_CASTEiJ_T0004988.1 MGP_CASTEiJ_G0004267.1 mouse_genomes_project 6 148994040 148999915 - Sspnos antisense antisense MGP_CASTEiJ_T0077741.1 MGP_CASTEiJ_G0029830.1 mouse_genomes_project 6 49722162 49751330 + MGP_CASTEiJ_P0077741 Nfe2l3 protein_coding protein_coding MGP_CASTEiJ_T0077742.1 MGP_CASTEiJ_G0029830.1 mouse_genomes_project 6 49722241 49726432 + Nfe2l3 protein_coding processed_transcript MGP_CASTEiJ_T0077743.1 MGP_CASTEiJ_G0029830.1 mouse_genomes_project 6 49722241 49749426 + MGP_CASTEiJ_P0077743 Nfe2l3 protein_coding protein_coding MGP_CASTEiJ_T0015054.1 MGP_CASTEiJ_G0013217.1 mouse_genomes_project 6 132054020 132054469 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099946.1 MGP_CASTEiJ_G0036859.1 mouse_genomes_project 6 35830513 35830617 + Gm23231 snRNA snRNA MGP_CASTEiJ_T0099981.1 MGP_CASTEiJ_G0036894.1 mouse_genomes_project 6 128077624 128077734 + Gm24947 snRNA snRNA MGP_CASTEiJ_T0002073.1 MGP_CASTEiJ_G0001993.1 mouse_genomes_project 6 129769950 129772274 + TEC TEC MGP_CASTEiJ_T0078878.1 MGP_CASTEiJ_G0030084.1 mouse_genomes_project 6 88215944 88219083 + Efcc1 protein_coding retained_intron MGP_CASTEiJ_T0078879.1 MGP_CASTEiJ_G0030084.1 mouse_genomes_project 6 88215944 88240592 + MGP_CASTEiJ_P0078879 Efcc1 protein_coding protein_coding MGP_CASTEiJ_T0078880.1 MGP_CASTEiJ_G0030084.1 mouse_genomes_project 6 88215968 88241049 + MGP_CASTEiJ_P0078880 Efcc1 protein_coding protein_coding MGP_CASTEiJ_T0078881.1 MGP_CASTEiJ_G0030084.1 mouse_genomes_project 6 88217854 88237017 + Efcc1 protein_coding processed_transcript MGP_CASTEiJ_T0078882.1 MGP_CASTEiJ_G0030084.1 mouse_genomes_project 6 88238661 88239902 + Efcc1 protein_coding retained_intron MGP_CASTEiJ_T0079327.1 MGP_CASTEiJ_G0030169.1 mouse_genomes_project 6 100622379 100666010 - MGP_CASTEiJ_P0079327 Eif4e3 protein_coding protein_coding MGP_CASTEiJ_T0008301.1 MGP_CASTEiJ_G0006737.1 mouse_genomes_project 6 10654526 10852364 + lincRNA lincRNA MGP_CASTEiJ_T0008302.1 MGP_CASTEiJ_G0006737.1 mouse_genomes_project 6 10654569 10679256 + lincRNA lincRNA MGP_CASTEiJ_T0079431.1 MGP_CASTEiJ_G0030193.1 mouse_genomes_project 6 113828179 113858528 - MGP_CASTEiJ_P0079431 Ssu2 protein_coding protein_coding MGP_CASTEiJ_T0079432.1 MGP_CASTEiJ_G0030193.1 mouse_genomes_project 6 113839283 113858504 - MGP_CASTEiJ_P0079432 Ssu2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079433.1 MGP_CASTEiJ_G0030193.1 mouse_genomes_project 6 113839291 113848210 - Ssu2 protein_coding processed_transcript MGP_CASTEiJ_T0079434.1 MGP_CASTEiJ_G0030193.1 mouse_genomes_project 6 113839826 113846212 - Ssu2 protein_coding retained_intron MGP_CASTEiJ_T0002485.1 MGP_CASTEiJ_G0002396.1 mouse_genomes_project 6 39367966 39368014 + MGP_CASTEiJ_P0002485 Trbj1-2 TR_J_gene TR_J_gene MGP_CASTEiJ_T0010467.1 MGP_CASTEiJ_G0008655.1 mouse_genomes_project 6 46527027 46527101 + Gm24325 miRNA miRNA MGP_CASTEiJ_T0079436.1 MGP_CASTEiJ_G0030195.1 mouse_genomes_project 6 113947716 113967421 - MGP_CASTEiJ_P0079436 Oxtr protein_coding protein_coding MGP_CASTEiJ_T0079437.1 MGP_CASTEiJ_G0030195.1 mouse_genomes_project 6 113947720 113965866 - MGP_CASTEiJ_P0079437 Oxtr protein_coding protein_coding MGP_CASTEiJ_T0014912.1 MGP_CASTEiJ_G0013075.1 mouse_genomes_project 6 83108532 83109289 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004812.1 MGP_CASTEiJ_G0004141.1 mouse_genomes_project 6 46731345 46737345 - Gm44119 antisense antisense MGP_CASTEiJ_T0077630.1 MGP_CASTEiJ_G0029805.1 mouse_genomes_project 6 46821978 46829257 - MGP_CASTEiJ_P0077630 Gimap6 protein_coding protein_coding MGP_CASTEiJ_T0077631.1 MGP_CASTEiJ_G0029805.1 mouse_genomes_project 6 46821979 46829245 - MGP_CASTEiJ_P0077631 Gimap6 protein_coding protein_coding MGP_CASTEiJ_T0077632.1 MGP_CASTEiJ_G0029805.1 mouse_genomes_project 6 46824141 46829228 - MGP_CASTEiJ_P0077632 Gimap6 protein_coding protein_coding MGP_CASTEiJ_T0077633.1 MGP_CASTEiJ_G0029805.1 mouse_genomes_project 6 46824829 46826644 - Gimap6 protein_coding processed_transcript MGP_CASTEiJ_T0076644.1 MGP_CASTEiJ_G0029576.1 mouse_genomes_project 6 15848569 15859101 + MGP_CASTEiJ_P0076644 Ankrd7 protein_coding protein_coding MGP_CASTEiJ_T0076645.1 MGP_CASTEiJ_G0029576.1 mouse_genomes_project 6 15848601 15859097 + MGP_CASTEiJ_P0076645 Ankrd7 protein_coding protein_coding MGP_CASTEiJ_T0004928.1 MGP_CASTEiJ_G0004213.1 mouse_genomes_project 6 115178393 115179349 - Gm43964 antisense antisense MGP_CASTEiJ_T0080159.1 MGP_CASTEiJ_G0030320.1 mouse_genomes_project 6 124749544 124777329 + MGP_CASTEiJ_P0080159 Foxj2 protein_coding protein_coding MGP_CASTEiJ_T0080160.1 MGP_CASTEiJ_G0030320.1 mouse_genomes_project 6 124750141 124777304 + MGP_CASTEiJ_P0080160 Foxj2 protein_coding protein_coding MGP_CASTEiJ_T0080161.1 MGP_CASTEiJ_G0030320.1 mouse_genomes_project 6 124757159 124764482 + MGP_CASTEiJ_P0080161 Foxj2 protein_coding protein_coding MGP_CASTEiJ_T0080716.1 MGP_CASTEiJ_G0030454.1 mouse_genomes_project 6 135068058 135070385 - A630073D07Rik protein_coding processed_transcript MGP_CASTEiJ_T0080717.1 MGP_CASTEiJ_G0030454.1 mouse_genomes_project 6 135068058 135070437 - MGP_CASTEiJ_P0080717 A630073D07Rik protein_coding protein_coding MGP_CASTEiJ_T0076727.1 MGP_CASTEiJ_G0029598.1 mouse_genomes_project 6 21975575 21988117 + MGP_CASTEiJ_P0076727 Spam1 protein_coding protein_coding MGP_CASTEiJ_T0076728.1 MGP_CASTEiJ_G0029598.1 mouse_genomes_project 6 21975588 21988117 + MGP_CASTEiJ_P0076728 Spam1 protein_coding protein_coding MGP_CASTEiJ_T0076729.1 MGP_CASTEiJ_G0029598.1 mouse_genomes_project 6 21975602 21981206 + Spam1 protein_coding retained_intron MGP_CASTEiJ_T0076730.1 MGP_CASTEiJ_G0029598.1 mouse_genomes_project 6 21979979 21988117 + MGP_CASTEiJ_P0076730 Spam1 protein_coding protein_coding MGP_CASTEiJ_T0079188.1 MGP_CASTEiJ_G0030143.1 mouse_genomes_project 6 92860954 92873877 - MGP_CASTEiJ_P0079188 Mrps25 protein_coding protein_coding MGP_CASTEiJ_T0079189.1 MGP_CASTEiJ_G0030143.1 mouse_genomes_project 6 92864721 92865786 - Mrps25 protein_coding retained_intron MGP_CASTEiJ_T0079190.1 MGP_CASTEiJ_G0030143.1 mouse_genomes_project 6 92868190 92873815 - Mrps25 protein_coding retained_intron MGP_CASTEiJ_T0014958.1 MGP_CASTEiJ_G0013121.1 mouse_genomes_project 6 101263102 101327608 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004881.1 MGP_CASTEiJ_G0004183.1 mouse_genomes_project 6 87733997 87736004 + Gm44418 antisense antisense MGP_CASTEiJ_T0102379.1 MGP_CASTEiJ_G0039104.1 mouse_genomes_project 6 39298919 39300088 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0077171.1 MGP_CASTEiJ_G0029674.1 mouse_genomes_project 6 34946989 35070936 - MGP_CASTEiJ_P0077171 Creb3l2 protein_coding protein_coding MGP_CASTEiJ_T0077172.1 MGP_CASTEiJ_G0029674.1 mouse_genomes_project 6 34949163 35070726 - MGP_CASTEiJ_P0077172 Creb3l2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077173.1 MGP_CASTEiJ_G0029674.1 mouse_genomes_project 6 34957286 34959527 - Creb3l2 protein_coding processed_transcript MGP_CASTEiJ_T0079951.1 MGP_CASTEiJ_G0030284.1 mouse_genomes_project 6 121652512 121665708 + Rad52 protein_coding processed_transcript MGP_CASTEiJ_T0079952.1 MGP_CASTEiJ_G0030284.1 mouse_genomes_project 6 121652517 121672998 + MGP_CASTEiJ_P0079952 Rad52 protein_coding protein_coding MGP_CASTEiJ_T0079953.1 MGP_CASTEiJ_G0030284.1 mouse_genomes_project 6 121652517 121673003 + MGP_CASTEiJ_P0079953 Rad52 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079954.1 MGP_CASTEiJ_G0030284.1 mouse_genomes_project 6 121652519 121664089 + Rad52 protein_coding retained_intron MGP_CASTEiJ_T0079955.1 MGP_CASTEiJ_G0030284.1 mouse_genomes_project 6 121652519 121663467 + Rad52 protein_coding processed_transcript MGP_CASTEiJ_T0079956.1 MGP_CASTEiJ_G0030284.1 mouse_genomes_project 6 121652542 121671677 + Rad52 protein_coding retained_intron MGP_CASTEiJ_T0079957.1 MGP_CASTEiJ_G0030284.1 mouse_genomes_project 6 121652548 121669484 + Rad52 protein_coding processed_transcript MGP_CASTEiJ_T0079958.1 MGP_CASTEiJ_G0030284.1 mouse_genomes_project 6 121652548 121669484 + Rad52 protein_coding processed_transcript MGP_CASTEiJ_T0079959.1 MGP_CASTEiJ_G0030284.1 mouse_genomes_project 6 121652553 121671175 + Rad52 protein_coding retained_intron MGP_CASTEiJ_T0079960.1 MGP_CASTEiJ_G0030284.1 mouse_genomes_project 6 121652590 121672998 + MGP_CASTEiJ_P0079960 Rad52 protein_coding protein_coding MGP_CASTEiJ_T0079961.1 MGP_CASTEiJ_G0030284.1 mouse_genomes_project 6 121663603 121664583 + Rad52 protein_coding retained_intron MGP_CASTEiJ_T0079962.1 MGP_CASTEiJ_G0030284.1 mouse_genomes_project 6 121664315 121669102 + Rad52 protein_coding retained_intron MGP_CASTEiJ_T0079963.1 MGP_CASTEiJ_G0030284.1 mouse_genomes_project 6 121665624 121669247 + Rad52 protein_coding retained_intron MGP_CASTEiJ_T0079964.1 MGP_CASTEiJ_G0030284.1 mouse_genomes_project 6 121668397 121671925 + Rad52 protein_coding retained_intron MGP_CASTEiJ_T0077202.1 MGP_CASTEiJ_G0029681.1 mouse_genomes_project 6 36003275 36014896 - MGP_CASTEiJ_P0077202 Zc3hav1l protein_coding protein_coding MGP_CASTEiJ_T0014872.1 MGP_CASTEiJ_G0013035.1 mouse_genomes_project 6 66790157 66791081 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079997.1 MGP_CASTEiJ_G0030288.1 mouse_genomes_project 6 122060329 122061397 + MGP_CASTEiJ_P0079997 D330020A13Rik protein_coding protein_coding MGP_CASTEiJ_T0015056.1 MGP_CASTEiJ_G0013219.1 mouse_genomes_project 6 133456381 133457440 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001862.1 MGP_CASTEiJ_G0001783.1 mouse_genomes_project 6 15061773 15063593 - TEC TEC MGP_CASTEiJ_T0002040.1 MGP_CASTEiJ_G0001961.1 mouse_genomes_project 6 103058678 103061329 + TEC TEC MGP_CASTEiJ_T0001924.1 MGP_CASTEiJ_G0001845.1 mouse_genomes_project 6 55343406 55344982 + TEC TEC MGP_CASTEiJ_T0008566.1 MGP_CASTEiJ_G0006931.1 mouse_genomes_project 6 152132668 152135160 + Gm26540 lincRNA lincRNA MGP_CASTEiJ_T0014861.1 MGP_CASTEiJ_G0013024.1 mouse_genomes_project 6 65603529 65606979 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008495.1 MGP_CASTEiJ_G0006878.1 mouse_genomes_project 6 119152640 119189856 - Gm45083 lincRNA lincRNA MGP_CASTEiJ_T0004787.1 MGP_CASTEiJ_G0004120.1 mouse_genomes_project 6 29743300 29755832 + Plxna4os3 antisense antisense MGP_CASTEiJ_T0004788.1 MGP_CASTEiJ_G0004120.1 mouse_genomes_project 6 29743384 29755824 + Plxna4os3 antisense antisense MGP_CASTEiJ_T0001892.1 MGP_CASTEiJ_G0001813.1 mouse_genomes_project 6 41169357 41170020 + TEC TEC MGP_CASTEiJ_T0077591.1 MGP_CASTEiJ_G0029794.1 mouse_genomes_project 6 46662034 46682457 + MGP_CASTEiJ_P0077591 Lrrc61 protein_coding protein_coding MGP_CASTEiJ_T0077592.1 MGP_CASTEiJ_G0029794.1 mouse_genomes_project 6 46662037 46678358 + MGP_CASTEiJ_P0077592 Lrrc61 protein_coding protein_coding MGP_CASTEiJ_T0077593.1 MGP_CASTEiJ_G0029794.1 mouse_genomes_project 6 46662037 46678338 + MGP_CASTEiJ_P0077593 Lrrc61 protein_coding protein_coding MGP_CASTEiJ_T0077594.1 MGP_CASTEiJ_G0029794.1 mouse_genomes_project 6 46662043 46682456 + MGP_CASTEiJ_P0077594 Lrrc61 protein_coding protein_coding MGP_CASTEiJ_T0077595.1 MGP_CASTEiJ_G0029794.1 mouse_genomes_project 6 46662049 46678233 + Lrrc61 protein_coding processed_transcript MGP_CASTEiJ_T0077596.1 MGP_CASTEiJ_G0029794.1 mouse_genomes_project 6 46662067 46678541 + MGP_CASTEiJ_P0077596 Lrrc61 protein_coding protein_coding MGP_CASTEiJ_T0081053.1 MGP_CASTEiJ_G0030538.1 mouse_genomes_project 6 145313855 145331560 - MGP_CASTEiJ_P0081053 Ldhb protein_coding protein_coding MGP_CASTEiJ_T0081054.1 MGP_CASTEiJ_G0030538.1 mouse_genomes_project 6 145313855 145319252 - MGP_CASTEiJ_P0081054 Ldhb protein_coding protein_coding MGP_CASTEiJ_T0081055.1 MGP_CASTEiJ_G0030538.1 mouse_genomes_project 6 145313942 145324990 - MGP_CASTEiJ_P0081055 Ldhb protein_coding protein_coding MGP_CASTEiJ_T0081056.1 MGP_CASTEiJ_G0030538.1 mouse_genomes_project 6 145319171 145331408 - MGP_CASTEiJ_P0081056 Ldhb protein_coding protein_coding MGP_CASTEiJ_T0011340.1 MGP_CASTEiJ_G0009528.1 mouse_genomes_project 6 144519076 144519387 - Gm23069 misc_RNA misc_RNA MGP_CASTEiJ_T0099987.1 MGP_CASTEiJ_G0036900.1 mouse_genomes_project 6 138756458 138756648 + Gm26105 snRNA snRNA MGP_CASTEiJ_T0004907.1 MGP_CASTEiJ_G0004200.1 mouse_genomes_project 6 99046617 99182518 + Gm32592 antisense antisense MGP_CASTEiJ_T0102380.1 MGP_CASTEiJ_G0039105.1 mouse_genomes_project 6 39340683 39342226 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0077679.1 MGP_CASTEiJ_G0029817.1 mouse_genomes_project 6 47172571 47174396 + Gpnmb protein_coding retained_intron MGP_CASTEiJ_T0077680.1 MGP_CASTEiJ_G0029817.1 mouse_genomes_project 6 47172640 47195081 + MGP_CASTEiJ_P0077680 Gpnmb protein_coding protein_coding MGP_CASTEiJ_T0077681.1 MGP_CASTEiJ_G0029817.1 mouse_genomes_project 6 47172690 47179816 + MGP_CASTEiJ_P0077681 Gpnmb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077682.1 MGP_CASTEiJ_G0029817.1 mouse_genomes_project 6 47172702 47207502 + MGP_CASTEiJ_P0077682 Gpnmb protein_coding protein_coding MGP_CASTEiJ_T0077683.1 MGP_CASTEiJ_G0029817.1 mouse_genomes_project 6 47184328 47185256 + Gpnmb protein_coding retained_intron MGP_CASTEiJ_T0008403.1 MGP_CASTEiJ_G0006806.1 mouse_genomes_project 6 59547651 59548137 + Gm44410 lincRNA lincRNA MGP_CASTEiJ_T0014970.1 MGP_CASTEiJ_G0013133.1 mouse_genomes_project 6 106331514 106333407 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008478.1 MGP_CASTEiJ_G0006863.1 mouse_genomes_project 6 102979626 102986474 + Gm44176 lincRNA lincRNA MGP_CASTEiJ_T0014926.1 MGP_CASTEiJ_G0013089.1 mouse_genomes_project 6 86233621 86234192 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002644.1 MGP_CASTEiJ_G0002534.1 mouse_genomes_project 6 39154118 39154382 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0000297.1 MGP_CASTEiJ_G0000246.1 mouse_genomes_project 6 69513347 69513916 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0004984.1 MGP_CASTEiJ_G0004263.1 mouse_genomes_project 6 148018899 148021774 + Gm26666 antisense antisense MGP_CASTEiJ_T0078288.1 MGP_CASTEiJ_G0029965.1 mouse_genomes_project 6 72064621 72083843 + MGP_CASTEiJ_P0078288 Ggcx protein_coding protein_coding MGP_CASTEiJ_T0078289.1 MGP_CASTEiJ_G0029965.1 mouse_genomes_project 6 72064654 72083492 + MGP_CASTEiJ_P0078289 Ggcx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078290.1 MGP_CASTEiJ_G0029965.1 mouse_genomes_project 6 72068217 72083333 + MGP_CASTEiJ_P0078290 Ggcx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078291.1 MGP_CASTEiJ_G0029965.1 mouse_genomes_project 6 72068268 72074420 + MGP_CASTEiJ_P0078291 Ggcx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078292.1 MGP_CASTEiJ_G0029965.1 mouse_genomes_project 6 72076999 72082349 + MGP_CASTEiJ_P0078292 Ggcx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0008309.1 MGP_CASTEiJ_G0006742.1 mouse_genomes_project 6 16250882 16286988 - 4930524B17Rik lincRNA lincRNA MGP_CASTEiJ_T0015083.1 MGP_CASTEiJ_G0013246.1 mouse_genomes_project 6 142790596 142791009 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080617.1 MGP_CASTEiJ_G0030420.1 mouse_genomes_project 6 131487148 131500076 + MGP_CASTEiJ_P0080617 Klrb1f protein_coding protein_coding MGP_CASTEiJ_T0080618.1 MGP_CASTEiJ_G0030420.1 mouse_genomes_project 6 131487148 131500076 + MGP_CASTEiJ_P0080618 Klrb1f protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080619.1 MGP_CASTEiJ_G0030420.1 mouse_genomes_project 6 131487167 131499322 + MGP_CASTEiJ_P0080619 Klrb1f protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080620.1 MGP_CASTEiJ_G0030420.1 mouse_genomes_project 6 131487172 131495433 + Klrb1f protein_coding retained_intron MGP_CASTEiJ_T0080621.1 MGP_CASTEiJ_G0030420.1 mouse_genomes_project 6 131487174 131496506 + MGP_CASTEiJ_P0080621 Klrb1f protein_coding protein_coding MGP_CASTEiJ_T0080622.1 MGP_CASTEiJ_G0030420.1 mouse_genomes_project 6 131492109 131496512 + Klrb1f protein_coding processed_transcript MGP_CASTEiJ_T0078929.1 MGP_CASTEiJ_G0030093.1 mouse_genomes_project 6 88482334 88530187 - MGP_CASTEiJ_P0078929 Rab7 protein_coding protein_coding MGP_CASTEiJ_T0078930.1 MGP_CASTEiJ_G0030093.1 mouse_genomes_project 6 88487863 88530148 - MGP_CASTEiJ_P0078930 Rab7 protein_coding protein_coding MGP_CASTEiJ_T0078931.1 MGP_CASTEiJ_G0030093.1 mouse_genomes_project 6 88487921 88530115 - MGP_CASTEiJ_P0078931 Rab7 protein_coding protein_coding MGP_CASTEiJ_T0014974.1 MGP_CASTEiJ_G0013137.1 mouse_genomes_project 6 108817004 108817653 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000200.1 MGP_CASTEiJ_G0000151.1 mouse_genomes_project 6 69524294 69524862 - MGP_CASTEiJ_P0000200 Igkv7-33 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000201.1 MGP_CASTEiJ_G0000151.1 mouse_genomes_project 6 69524294 69524862 - MGP_CASTEiJ_P0000201 Igkv7-33 IG_V_gene IG_V_gene MGP_CASTEiJ_T0077371.1 MGP_CASTEiJ_G0029729.1 mouse_genomes_project 6 39356047 39359320 + MGP_CASTEiJ_P0077371 Prss2 protein_coding protein_coding MGP_CASTEiJ_T0017558.1 MGP_CASTEiJ_G0014963.1 mouse_genomes_project 6 124457281 124468482 - Gm16556 processed_transcript processed_transcript MGP_CASTEiJ_T0017559.1 MGP_CASTEiJ_G0014963.1 mouse_genomes_project 6 124457307 124468458 - Gm16556 processed_transcript processed_transcript MGP_CASTEiJ_T0014802.1 MGP_CASTEiJ_G0012965.1 mouse_genomes_project 6 47119961 47121051 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008488.1 MGP_CASTEiJ_G0006873.1 mouse_genomes_project 6 117035289 117043079 - Gm44082 lincRNA lincRNA MGP_CASTEiJ_T0079393.1 MGP_CASTEiJ_G0030186.1 mouse_genomes_project 6 109415599 109502747 - MGP_CASTEiJ_P0079393 Sumf1 protein_coding protein_coding MGP_CASTEiJ_T0079394.1 MGP_CASTEiJ_G0030186.1 mouse_genomes_project 6 109416917 109434916 - Sumf1 protein_coding processed_transcript MGP_CASTEiJ_T0079395.1 MGP_CASTEiJ_G0030186.1 mouse_genomes_project 6 109417046 109502721 - MGP_CASTEiJ_P0079395 Sumf1 protein_coding protein_coding MGP_CASTEiJ_T0079396.1 MGP_CASTEiJ_G0030186.1 mouse_genomes_project 6 109417046 109502721 - MGP_CASTEiJ_P0079396 Sumf1 protein_coding protein_coding MGP_CASTEiJ_T0079397.1 MGP_CASTEiJ_G0030186.1 mouse_genomes_project 6 109426627 109455316 - MGP_CASTEiJ_P0079397 Sumf1 protein_coding protein_coding MGP_CASTEiJ_T0079398.1 MGP_CASTEiJ_G0030186.1 mouse_genomes_project 6 109454933 109464135 - Sumf1 protein_coding retained_intron MGP_CASTEiJ_T0079358.1 MGP_CASTEiJ_G0030179.1 mouse_genomes_project 6 105717362 105880015 + MGP_CASTEiJ_P0079358 Cntn6 protein_coding protein_coding MGP_CASTEiJ_T0079359.1 MGP_CASTEiJ_G0030179.1 mouse_genomes_project 6 105717626 105799672 + Cntn6 protein_coding retained_intron MGP_CASTEiJ_T0079360.1 MGP_CASTEiJ_G0030179.1 mouse_genomes_project 6 105795758 106109226 + MGP_CASTEiJ_P0079360 Cntn6 protein_coding protein_coding MGP_CASTEiJ_T0014768.1 MGP_CASTEiJ_G0012931.1 mouse_genomes_project 6 34210243 34210671 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077184.1 MGP_CASTEiJ_G0029677.1 mouse_genomes_project 6 35682244 35752797 - MGP_CASTEiJ_P0077184 Svopl protein_coding protein_coding MGP_CASTEiJ_T0077185.1 MGP_CASTEiJ_G0029677.1 mouse_genomes_project 6 35683017 35737600 - MGP_CASTEiJ_P0077185 Svopl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077186.1 MGP_CASTEiJ_G0029677.1 mouse_genomes_project 6 35718164 35728521 - Svopl protein_coding retained_intron MGP_CASTEiJ_T0077187.1 MGP_CASTEiJ_G0029677.1 mouse_genomes_project 6 35718448 35722857 - Svopl protein_coding retained_intron MGP_CASTEiJ_T0077188.1 MGP_CASTEiJ_G0029677.1 mouse_genomes_project 6 35718606 35752797 - Svopl protein_coding retained_intron MGP_CASTEiJ_T0079035.1 MGP_CASTEiJ_G0030107.1 mouse_genomes_project 6 89886085 89927449 - MGP_CASTEiJ_P0079035 Plxna1 protein_coding protein_coding MGP_CASTEiJ_T0079036.1 MGP_CASTEiJ_G0030107.1 mouse_genomes_project 6 89886085 89932301 - MGP_CASTEiJ_P0079036 Plxna1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079037.1 MGP_CASTEiJ_G0030107.1 mouse_genomes_project 6 89890406 89890872 - Plxna1 protein_coding retained_intron MGP_CASTEiJ_T0079038.1 MGP_CASTEiJ_G0030107.1 mouse_genomes_project 6 89892297 89894402 - MGP_CASTEiJ_P0079038 Plxna1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079039.1 MGP_CASTEiJ_G0030107.1 mouse_genomes_project 6 89900146 89902839 - Plxna1 protein_coding processed_transcript MGP_CASTEiJ_T0079040.1 MGP_CASTEiJ_G0030107.1 mouse_genomes_project 6 89905178 89912357 - MGP_CASTEiJ_P0079040 Plxna1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0102378.1 MGP_CASTEiJ_G0039103.1 mouse_genomes_project 6 39298876 39300088 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0004896.1 MGP_CASTEiJ_G0004194.1 mouse_genomes_project 6 91216013 91219251 - Gm15756 antisense antisense MGP_CASTEiJ_T0008304.1 MGP_CASTEiJ_G0006739.1 mouse_genomes_project 6 13956416 13962617 - Gm15473 lincRNA lincRNA MGP_CASTEiJ_T0001923.1 MGP_CASTEiJ_G0001844.1 mouse_genomes_project 6 53405949 53409256 + TEC TEC MGP_CASTEiJ_T0014789.1 MGP_CASTEiJ_G0012952.1 mouse_genomes_project 6 42899938 42900641 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008440.1 MGP_CASTEiJ_G0006836.1 mouse_genomes_project 6 86910413 86911096 - Gm43936 lincRNA lincRNA MGP_CASTEiJ_T0102388.1 MGP_CASTEiJ_G0039113.1 mouse_genomes_project 6 55796255 55797093 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0014966.1 MGP_CASTEiJ_G0013129.1 mouse_genomes_project 6 104329440 104329593 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079577.1 MGP_CASTEiJ_G0030216.1 mouse_genomes_project 6 115037533 115058901 - MGP_CASTEiJ_P0079577 Emc3 protein_coding protein_coding MGP_CASTEiJ_T0079578.1 MGP_CASTEiJ_G0030216.1 mouse_genomes_project 6 115042422 115043539 - Emc3 protein_coding retained_intron MGP_CASTEiJ_T0079579.1 MGP_CASTEiJ_G0030216.1 mouse_genomes_project 6 115057651 115058867 - Emc3 protein_coding retained_intron MGP_CASTEiJ_T0076345.1 MGP_CASTEiJ_G0029524.1 mouse_genomes_project 6 1228879 1241443 + MGP_CASTEiJ_P0076345 Col1a2 protein_coding protein_coding MGP_CASTEiJ_T0076346.1 MGP_CASTEiJ_G0029524.1 mouse_genomes_project 6 1229516 1266515 + MGP_CASTEiJ_P0076346 Col1a2 protein_coding protein_coding MGP_CASTEiJ_T0076347.1 MGP_CASTEiJ_G0029524.1 mouse_genomes_project 6 1229725 1238992 + Col1a2 protein_coding retained_intron MGP_CASTEiJ_T0076348.1 MGP_CASTEiJ_G0029524.1 mouse_genomes_project 6 1229725 1239491 + Col1a2 protein_coding retained_intron MGP_CASTEiJ_T0076349.1 MGP_CASTEiJ_G0029524.1 mouse_genomes_project 6 1235165 1286104 + MGP_CASTEiJ_P0076349 Col1a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076350.1 MGP_CASTEiJ_G0029524.1 mouse_genomes_project 6 1245536 1254375 + Col1a2 protein_coding retained_intron MGP_CASTEiJ_T0076351.1 MGP_CASTEiJ_G0029524.1 mouse_genomes_project 6 1255079 1260823 + Col1a2 protein_coding retained_intron MGP_CASTEiJ_T0076352.1 MGP_CASTEiJ_G0029524.1 mouse_genomes_project 6 1260718 1261561 + Col1a2 protein_coding retained_intron MGP_CASTEiJ_T0076353.1 MGP_CASTEiJ_G0029524.1 mouse_genomes_project 6 1262425 1262927 + Col1a2 protein_coding retained_intron MGP_CASTEiJ_T0078846.1 MGP_CASTEiJ_G0030074.1 mouse_genomes_project 6 87489317 87541091 + MGP_CASTEiJ_P0078846 Gfpt1 protein_coding protein_coding MGP_CASTEiJ_T0078847.1 MGP_CASTEiJ_G0030074.1 mouse_genomes_project 6 87489317 87503573 + MGP_CASTEiJ_P0078847 Gfpt1 protein_coding protein_coding MGP_CASTEiJ_T0078848.1 MGP_CASTEiJ_G0030074.1 mouse_genomes_project 6 87489321 87502121 + Gfpt1 protein_coding processed_transcript MGP_CASTEiJ_T0078849.1 MGP_CASTEiJ_G0030074.1 mouse_genomes_project 6 87489321 87492114 + Gfpt1 protein_coding retained_intron MGP_CASTEiJ_T0078850.1 MGP_CASTEiJ_G0030074.1 mouse_genomes_project 6 87489321 87503573 + MGP_CASTEiJ_P0078850 Gfpt1 protein_coding protein_coding MGP_CASTEiJ_T0078851.1 MGP_CASTEiJ_G0030074.1 mouse_genomes_project 6 87489362 87537134 + MGP_CASTEiJ_P0078851 Gfpt1 protein_coding protein_coding MGP_CASTEiJ_T0078852.1 MGP_CASTEiJ_G0030074.1 mouse_genomes_project 6 87525813 87535469 + Gfpt1 protein_coding retained_intron MGP_CASTEiJ_T0000283.1 MGP_CASTEiJ_G0000232.1 mouse_genomes_project 6 68541543 68542177 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0004926.1 MGP_CASTEiJ_G0004211.1 mouse_genomes_project 6 114805908 114824126 - Gm15492 antisense antisense MGP_CASTEiJ_T0080547.1 MGP_CASTEiJ_G0030403.1 mouse_genomes_project 6 130604222 130681175 - MGP_CASTEiJ_P0080547 Tead4 protein_coding protein_coding MGP_CASTEiJ_T0080548.1 MGP_CASTEiJ_G0030403.1 mouse_genomes_project 6 130605262 130681175 - MGP_CASTEiJ_P0080548 Tead4 protein_coding protein_coding MGP_CASTEiJ_T0080549.1 MGP_CASTEiJ_G0030403.1 mouse_genomes_project 6 130605447 130654465 - MGP_CASTEiJ_P0080549 Tead4 protein_coding protein_coding MGP_CASTEiJ_T0080551.1 MGP_CASTEiJ_G0030403.1 mouse_genomes_project 6 130649506 130681185 - MGP_CASTEiJ_P0080551 Tead4 protein_coding protein_coding MGP_CASTEiJ_T0080552.1 MGP_CASTEiJ_G0030403.1 mouse_genomes_project 6 130649556 130681100 - MGP_CASTEiJ_P0080552 Tead4 protein_coding protein_coding MGP_CASTEiJ_T0008560.1 MGP_CASTEiJ_G0006926.1 mouse_genomes_project 6 151293190 151294397 - Gm17216 lincRNA lincRNA MGP_CASTEiJ_T0076975.1 MGP_CASTEiJ_G0029641.1 mouse_genomes_project 6 28047466 28090613 - MGP_CASTEiJ_P0076975 Cep41 protein_coding protein_coding MGP_CASTEiJ_T0076976.1 MGP_CASTEiJ_G0029641.1 mouse_genomes_project 6 28047468 28090557 - MGP_CASTEiJ_P0076976 Cep41 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076977.1 MGP_CASTEiJ_G0029641.1 mouse_genomes_project 6 28048387 28090559 - MGP_CASTEiJ_P0076977 Cep41 protein_coding protein_coding MGP_CASTEiJ_T0076978.1 MGP_CASTEiJ_G0029641.1 mouse_genomes_project 6 28048388 28063799 - Cep41 protein_coding processed_transcript MGP_CASTEiJ_T0076979.1 MGP_CASTEiJ_G0029641.1 mouse_genomes_project 6 28049541 28050816 - Cep41 protein_coding retained_intron MGP_CASTEiJ_T0076980.1 MGP_CASTEiJ_G0029641.1 mouse_genomes_project 6 28052383 28055799 - Cep41 protein_coding retained_intron MGP_CASTEiJ_T0076981.1 MGP_CASTEiJ_G0029641.1 mouse_genomes_project 6 28055410 28089948 - MGP_CASTEiJ_P0076981 Cep41 protein_coding protein_coding MGP_CASTEiJ_T0076982.1 MGP_CASTEiJ_G0029641.1 mouse_genomes_project 6 28060462 28090540 - MGP_CASTEiJ_P0076982 Cep41 protein_coding protein_coding MGP_CASTEiJ_T0076983.1 MGP_CASTEiJ_G0029641.1 mouse_genomes_project 6 28060748 28074978 - MGP_CASTEiJ_P0076983 Cep41 protein_coding protein_coding MGP_CASTEiJ_T0076984.1 MGP_CASTEiJ_G0029641.1 mouse_genomes_project 6 28073526 28090564 - MGP_CASTEiJ_P0076984 Cep41 protein_coding protein_coding MGP_CASTEiJ_T0008492.1 MGP_CASTEiJ_G0006877.1 mouse_genomes_project 6 119133630 119142111 + Gm9946 lincRNA lincRNA MGP_CASTEiJ_T0008493.1 MGP_CASTEiJ_G0006877.1 mouse_genomes_project 6 119133630 119146216 + Gm9946 lincRNA lincRNA MGP_CASTEiJ_T0008494.1 MGP_CASTEiJ_G0006877.1 mouse_genomes_project 6 119141589 119141973 + Gm9946 lincRNA lincRNA MGP_CASTEiJ_T0078331.1 MGP_CASTEiJ_G0029971.1 mouse_genomes_project 6 72277844 72286032 - MGP_CASTEiJ_P0078331 Tgoln1 protein_coding protein_coding MGP_CASTEiJ_T0101164.1 MGP_CASTEiJ_G0038077.1 mouse_genomes_project 6 40136911 40136989 + Gm25108 snoRNA snoRNA MGP_CASTEiJ_T0081185.1 MGP_CASTEiJ_G0030558.1 mouse_genomes_project 6 149580043 149584994 - MGP_CASTEiJ_P0081185 Asun protein_coding protein_coding MGP_CASTEiJ_T0081186.1 MGP_CASTEiJ_G0030558.1 mouse_genomes_project 6 149580043 149587684 - MGP_CASTEiJ_P0081186 Asun protein_coding protein_coding MGP_CASTEiJ_T0081187.1 MGP_CASTEiJ_G0030558.1 mouse_genomes_project 6 149580043 149611446 - MGP_CASTEiJ_P0081187 Asun protein_coding protein_coding MGP_CASTEiJ_T0081188.1 MGP_CASTEiJ_G0030558.1 mouse_genomes_project 6 149580052 149581791 - Asun protein_coding retained_intron MGP_CASTEiJ_T0081189.1 MGP_CASTEiJ_G0030558.1 mouse_genomes_project 6 149580342 149580813 - Asun protein_coding retained_intron MGP_CASTEiJ_T0081190.1 MGP_CASTEiJ_G0030558.1 mouse_genomes_project 6 149580505 149584447 - Asun protein_coding retained_intron MGP_CASTEiJ_T0081191.1 MGP_CASTEiJ_G0030558.1 mouse_genomes_project 6 149582897 149586598 - Asun protein_coding processed_transcript MGP_CASTEiJ_T0081192.1 MGP_CASTEiJ_G0030558.1 mouse_genomes_project 6 149584493 149585171 - Asun protein_coding retained_intron MGP_CASTEiJ_T0081193.1 MGP_CASTEiJ_G0030558.1 mouse_genomes_project 6 149585363 149609878 - MGP_CASTEiJ_P0081193 Asun protein_coding protein_coding MGP_CASTEiJ_T0081194.1 MGP_CASTEiJ_G0030558.1 mouse_genomes_project 6 149593774 149597087 - Asun protein_coding retained_intron MGP_CASTEiJ_T0081195.1 MGP_CASTEiJ_G0030558.1 mouse_genomes_project 6 149607007 149611391 - Asun protein_coding retained_intron MGP_CASTEiJ_T0002028.1 MGP_CASTEiJ_G0001949.1 mouse_genomes_project 6 101170712 101171116 - TEC TEC MGP_CASTEiJ_T0077486.1 MGP_CASTEiJ_G0029775.1 mouse_genomes_project 6 41103749 41104810 + MGP_CASTEiJ_P0077486 Olfr47 protein_coding protein_coding MGP_CASTEiJ_T0079140.1 MGP_CASTEiJ_G0030136.1 mouse_genomes_project 6 92166487 92175273 + MGP_CASTEiJ_P0079140 Lsm3 protein_coding protein_coding MGP_CASTEiJ_T0079141.1 MGP_CASTEiJ_G0030136.1 mouse_genomes_project 6 92166516 92172479 + Lsm3 protein_coding retained_intron MGP_CASTEiJ_T0079142.1 MGP_CASTEiJ_G0030136.1 mouse_genomes_project 6 92166536 92170657 + Lsm3 protein_coding retained_intron MGP_CASTEiJ_T0079143.1 MGP_CASTEiJ_G0030136.1 mouse_genomes_project 6 92166606 92167995 + Lsm3 protein_coding retained_intron MGP_CASTEiJ_T0079144.1 MGP_CASTEiJ_G0030136.1 mouse_genomes_project 6 92166607 92175268 + MGP_CASTEiJ_P0079144 Lsm3 protein_coding protein_coding MGP_CASTEiJ_T0102420.1 MGP_CASTEiJ_G0039145.1 mouse_genomes_project 6 126195129 126196031 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099003.1 MGP_CASTEiJ_G0035923.1 mouse_genomes_project 6 147621312 147623640 - Sox5it sense_intronic sense_intronic MGP_CASTEiJ_T0076338.1 MGP_CASTEiJ_G0029522.1 mouse_genomes_project 6 729037 733589 + MGP_CASTEiJ_P0076338 Gng11 protein_coding protein_coding MGP_CASTEiJ_T0002599.1 MGP_CASTEiJ_G0002494.1 mouse_genomes_project 6 39000098 39000537 + MGP_CASTEiJ_P0002599 Trbv13-3 TR_V_gene TR_V_gene MGP_CASTEiJ_T0077789.1 MGP_CASTEiJ_G0029843.1 mouse_genomes_project 6 50580762 50586695 - MGP_CASTEiJ_P0077789 Hoxa7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077790.1 MGP_CASTEiJ_G0029843.1 mouse_genomes_project 6 50580769 50583808 - MGP_CASTEiJ_P0077790 Hoxa7 protein_coding protein_coding MGP_CASTEiJ_T0077791.1 MGP_CASTEiJ_G0029843.1 mouse_genomes_project 6 50582057 50585015 - MGP_CASTEiJ_P0077791 Hoxa7 protein_coding protein_coding MGP_CASTEiJ_T0077792.1 MGP_CASTEiJ_G0029843.1 mouse_genomes_project 6 50582313 50588132 - MGP_CASTEiJ_P0077792 Hoxa7 protein_coding protein_coding MGP_CASTEiJ_T0077793.1 MGP_CASTEiJ_G0029843.1 mouse_genomes_project 6 50582744 50583755 - MGP_CASTEiJ_P0077793 Hoxa7 protein_coding protein_coding MGP_CASTEiJ_T0011337.1 MGP_CASTEiJ_G0009525.1 mouse_genomes_project 6 124530596 124530708 + Gm26168 misc_RNA misc_RNA MGP_CASTEiJ_T0008447.1 MGP_CASTEiJ_G0006843.1 mouse_genomes_project 6 89696546 89702794 + Gm1965 lincRNA lincRNA MGP_CASTEiJ_T0008448.1 MGP_CASTEiJ_G0006843.1 mouse_genomes_project 6 89696557 89702777 + Gm1965 lincRNA lincRNA MGP_CASTEiJ_T0008449.1 MGP_CASTEiJ_G0006843.1 mouse_genomes_project 6 89696557 89702812 + Gm1965 lincRNA lincRNA MGP_CASTEiJ_T0008450.1 MGP_CASTEiJ_G0006843.1 mouse_genomes_project 6 89696557 89702098 + Gm1965 lincRNA lincRNA MGP_CASTEiJ_T0078332.1 MGP_CASTEiJ_G0029972.1 mouse_genomes_project 6 72297238 72471246 - MGP_CASTEiJ_P0078332 Tcf7l1 protein_coding protein_coding MGP_CASTEiJ_T0078333.1 MGP_CASTEiJ_G0029972.1 mouse_genomes_project 6 72298119 72470944 - MGP_CASTEiJ_P0078333 Tcf7l1 protein_coding protein_coding MGP_CASTEiJ_T0078334.1 MGP_CASTEiJ_G0029972.1 mouse_genomes_project 6 72305079 72470590 - MGP_CASTEiJ_P0078334 Tcf7l1 protein_coding protein_coding MGP_CASTEiJ_T0078335.1 MGP_CASTEiJ_G0029972.1 mouse_genomes_project 6 72320696 72346182 - Tcf7l1 protein_coding processed_transcript MGP_CASTEiJ_T0002021.1 MGP_CASTEiJ_G0001942.1 mouse_genomes_project 6 93937458 93941451 + TEC TEC MGP_CASTEiJ_T0078004.1 MGP_CASTEiJ_G0029897.1 mouse_genomes_project 6 56401177 56402212 - MGP_CASTEiJ_P0078004 Vmn1r21 protein_coding protein_coding MGP_CASTEiJ_T0078005.1 MGP_CASTEiJ_G0029897.1 mouse_genomes_project 6 56401848 56407721 - MGP_CASTEiJ_P0078005 Vmn1r21 protein_coding protein_coding MGP_CASTEiJ_T0078006.1 MGP_CASTEiJ_G0029897.1 mouse_genomes_project 6 56401855 56407723 - MGP_CASTEiJ_P0078006 Vmn1r21 protein_coding protein_coding MGP_CASTEiJ_T0008458.1 MGP_CASTEiJ_G0006849.1 mouse_genomes_project 6 91758105 91759220 - Gm44278 lincRNA lincRNA MGP_CASTEiJ_T0002417.1 MGP_CASTEiJ_G0002333.1 mouse_genomes_project 6 39372142 39373794 + MGP_CASTEiJ_P0002417 Trbc1 TR_C_gene TR_C_gene MGP_CASTEiJ_T0008353.1 MGP_CASTEiJ_G0006773.1 mouse_genomes_project 6 33760710 33943089 - lincRNA lincRNA MGP_CASTEiJ_T0008354.1 MGP_CASTEiJ_G0006773.1 mouse_genomes_project 6 33763077 33835678 - lincRNA lincRNA MGP_CASTEiJ_T0008355.1 MGP_CASTEiJ_G0006773.1 mouse_genomes_project 6 33827789 33943330 - lincRNA lincRNA MGP_CASTEiJ_T0008356.1 MGP_CASTEiJ_G0006773.1 mouse_genomes_project 6 33886907 33943472 - lincRNA lincRNA MGP_CASTEiJ_T0008357.1 MGP_CASTEiJ_G0006773.1 mouse_genomes_project 6 33942614 33943526 - lincRNA lincRNA MGP_CASTEiJ_T0008358.1 MGP_CASTEiJ_G0006773.1 mouse_genomes_project 6 33942616 33945428 - lincRNA lincRNA MGP_CASTEiJ_T0008359.1 MGP_CASTEiJ_G0006773.1 mouse_genomes_project 6 33942623 33944155 - lincRNA lincRNA MGP_CASTEiJ_T0008360.1 MGP_CASTEiJ_G0006773.1 mouse_genomes_project 6 33942903 33944663 - lincRNA lincRNA MGP_CASTEiJ_T0008361.1 MGP_CASTEiJ_G0006773.1 mouse_genomes_project 6 33942977 33944296 - lincRNA lincRNA MGP_CASTEiJ_T0002097.1 MGP_CASTEiJ_G0002017.1 mouse_genomes_project 6 141266179 141266679 + TEC TEC MGP_CASTEiJ_T0014777.1 MGP_CASTEiJ_G0012940.1 mouse_genomes_project 6 38877652 38877840 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001985.1 MGP_CASTEiJ_G0001906.1 mouse_genomes_project 6 87402023 87403812 + TEC TEC MGP_CASTEiJ_T0014884.1 MGP_CASTEiJ_G0013047.1 mouse_genomes_project 6 68494689 68495142 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015065.1 MGP_CASTEiJ_G0013228.1 mouse_genomes_project 6 134927380 134927813 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017547.1 MGP_CASTEiJ_G0014959.1 mouse_genomes_project 6 96139855 96225411 - AY512915 processed_transcript antisense MGP_CASTEiJ_T0017548.1 MGP_CASTEiJ_G0014959.1 mouse_genomes_project 6 96165706 96225398 - AY512915 processed_transcript antisense MGP_CASTEiJ_T0017549.1 MGP_CASTEiJ_G0014959.1 mouse_genomes_project 6 96180802 96225413 - AY512915 processed_transcript lincRNA MGP_CASTEiJ_T0017550.1 MGP_CASTEiJ_G0014959.1 mouse_genomes_project 6 96201557 96225391 - AY512915 processed_transcript antisense MGP_CASTEiJ_T0017551.1 MGP_CASTEiJ_G0014959.1 mouse_genomes_project 6 96216448 96225397 - AY512915 processed_transcript processed_transcript MGP_CASTEiJ_T0101159.1 MGP_CASTEiJ_G0038072.1 mouse_genomes_project 6 24866427 24866544 + Gm26310 snoRNA snoRNA MGP_CASTEiJ_T0078837.1 MGP_CASTEiJ_G0030073.1 mouse_genomes_project 6 87452491 87473484 + MGP_CASTEiJ_P0078837 Nfu1 protein_coding protein_coding MGP_CASTEiJ_T0078838.1 MGP_CASTEiJ_G0030073.1 mouse_genomes_project 6 87453091 87458947 + Nfu1 protein_coding retained_intron MGP_CASTEiJ_T0078839.1 MGP_CASTEiJ_G0030073.1 mouse_genomes_project 6 87453091 87473477 + MGP_CASTEiJ_P0078839 Nfu1 protein_coding protein_coding MGP_CASTEiJ_T0078840.1 MGP_CASTEiJ_G0030073.1 mouse_genomes_project 6 87453091 87473482 + MGP_CASTEiJ_P0078840 Nfu1 protein_coding protein_coding MGP_CASTEiJ_T0078841.1 MGP_CASTEiJ_G0030073.1 mouse_genomes_project 6 87453135 87455650 + Nfu1 protein_coding retained_intron MGP_CASTEiJ_T0078842.1 MGP_CASTEiJ_G0030073.1 mouse_genomes_project 6 87453144 87456743 + Nfu1 protein_coding retained_intron MGP_CASTEiJ_T0078843.1 MGP_CASTEiJ_G0030073.1 mouse_genomes_project 6 87453144 87467029 + MGP_CASTEiJ_P0078843 Nfu1 protein_coding protein_coding MGP_CASTEiJ_T0078844.1 MGP_CASTEiJ_G0030073.1 mouse_genomes_project 6 87453258 87469415 + Nfu1 protein_coding processed_transcript MGP_CASTEiJ_T0078845.1 MGP_CASTEiJ_G0030073.1 mouse_genomes_project 6 87468862 87473484 + Nfu1 protein_coding retained_intron MGP_CASTEiJ_T0010481.1 MGP_CASTEiJ_G0008669.1 mouse_genomes_project 6 85624372 85624454 - Mir705 miRNA miRNA MGP_CASTEiJ_T0008294.1 MGP_CASTEiJ_G0006732.1 mouse_genomes_project 6 4554055 4570278 + lincRNA lincRNA MGP_CASTEiJ_T0080670.1 MGP_CASTEiJ_G0030434.1 mouse_genomes_project 6 132120678 132136997 - MGP_CASTEiJ_P0080670 Klrk1 protein_coding protein_coding MGP_CASTEiJ_T0080671.1 MGP_CASTEiJ_G0030434.1 mouse_genomes_project 6 132122766 132135877 - MGP_CASTEiJ_P0080671 Klrk1 protein_coding protein_coding MGP_CASTEiJ_T0080672.1 MGP_CASTEiJ_G0030434.1 mouse_genomes_project 6 132122812 132136974 - MGP_CASTEiJ_P0080672 Klrk1 protein_coding protein_coding MGP_CASTEiJ_T0080673.1 MGP_CASTEiJ_G0030434.1 mouse_genomes_project 6 132128490 132135685 - Klrk1 protein_coding retained_intron MGP_CASTEiJ_T0080674.1 MGP_CASTEiJ_G0030434.1 mouse_genomes_project 6 132128565 132135789 - Klrk1 protein_coding retained_intron MGP_CASTEiJ_T0080675.1 MGP_CASTEiJ_G0030434.1 mouse_genomes_project 6 132133706 132136993 - Klrk1 protein_coding retained_intron MGP_CASTEiJ_T0078116.1 MGP_CASTEiJ_G0029929.1 mouse_genomes_project 6 66206863 66208080 - MGP_CASTEiJ_P0078116 protein_coding protein_coding MGP_CASTEiJ_T0014977.1 MGP_CASTEiJ_G0013140.1 mouse_genomes_project 6 110232123 110233442 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101807.1 MGP_CASTEiJ_G0038573.1 mouse_genomes_project 6 125973290 125994496 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0080512.1 MGP_CASTEiJ_G0030396.1 mouse_genomes_project 6 129365283 129394008 - MGP_CASTEiJ_P0080512 Ccnd2 protein_coding protein_coding MGP_CASTEiJ_T0080513.1 MGP_CASTEiJ_G0030396.1 mouse_genomes_project 6 129371850 129382098 - Ccnd2 protein_coding processed_transcript MGP_CASTEiJ_T0080514.1 MGP_CASTEiJ_G0030396.1 mouse_genomes_project 6 129382038 129389631 - Ccnd2 protein_coding processed_transcript MGP_CASTEiJ_T0080515.1 MGP_CASTEiJ_G0030396.1 mouse_genomes_project 6 129388965 129396446 - MGP_CASTEiJ_P0080515 Ccnd2 protein_coding protein_coding MGP_CASTEiJ_T0080516.1 MGP_CASTEiJ_G0030396.1 mouse_genomes_project 6 129390444 129393955 - Ccnd2 protein_coding retained_intron MGP_CASTEiJ_T0080517.1 MGP_CASTEiJ_G0030396.1 mouse_genomes_project 6 129391226 129393981 - MGP_CASTEiJ_P0080517 Ccnd2 protein_coding protein_coding MGP_CASTEiJ_T0080518.1 MGP_CASTEiJ_G0030396.1 mouse_genomes_project 6 129391243 129393955 - MGP_CASTEiJ_P0080518 Ccnd2 protein_coding protein_coding MGP_CASTEiJ_T0080519.1 MGP_CASTEiJ_G0030396.1 mouse_genomes_project 6 129393728 129393909 - Ccnd2 protein_coding processed_transcript MGP_CASTEiJ_T0077781.1 MGP_CASTEiJ_G0029838.1 mouse_genomes_project 6 50530845 50579392 - MGP_CASTEiJ_P0077781 Hoxa3 protein_coding protein_coding MGP_CASTEiJ_T0077782.1 MGP_CASTEiJ_G0029838.1 mouse_genomes_project 6 50534359 50547213 - MGP_CASTEiJ_P0077782 Hoxa3 protein_coding protein_coding MGP_CASTEiJ_T0077784.1 MGP_CASTEiJ_G0029838.1 mouse_genomes_project 6 50543914 50548232 - Hoxa3 protein_coding processed_transcript MGP_CASTEiJ_T0077786.1 MGP_CASTEiJ_G0029838.1 mouse_genomes_project 6 50564323 50579613 - Hoxa3 protein_coding retained_intron MGP_CASTEiJ_T0004925.1 MGP_CASTEiJ_G0004210.1 mouse_genomes_project 6 114773071 114774166 - Gm16161 antisense antisense MGP_CASTEiJ_T0002087.1 MGP_CASTEiJ_G0002007.1 mouse_genomes_project 6 136371702 136375720 + TEC TEC MGP_CASTEiJ_T0080510.1 MGP_CASTEiJ_G0030395.1 mouse_genomes_project 6 129325364 129348206 - MGP_CASTEiJ_P0080510 Tigar protein_coding protein_coding MGP_CASTEiJ_T0080511.1 MGP_CASTEiJ_G0030395.1 mouse_genomes_project 6 129328182 129348213 - MGP_CASTEiJ_P0080511 Tigar protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0102428.1 MGP_CASTEiJ_G0039153.1 mouse_genomes_project 6 133456247 133470162 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101183.1 MGP_CASTEiJ_G0038096.1 mouse_genomes_project 6 71497192 71497329 - Gm22486 snoRNA snoRNA MGP_CASTEiJ_T0004929.1 MGP_CASTEiJ_G0004214.1 mouse_genomes_project 6 115260375 115261524 + Gm26982 antisense antisense MGP_CASTEiJ_T0000161.1 MGP_CASTEiJ_G0000123.1 mouse_genomes_project 6 68042420 68042906 + MGP_CASTEiJ_P0000161 Igkv15-103 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000289.1 MGP_CASTEiJ_G0000238.1 mouse_genomes_project 6 69110245 69110563 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0078491.1 MGP_CASTEiJ_G0030010.1 mouse_genomes_project 6 83250655 83254343 - MGP_CASTEiJ_P0078491 Ino80b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078492.1 MGP_CASTEiJ_G0030010.1 mouse_genomes_project 6 83250655 83254343 - MGP_CASTEiJ_P0078492 Ino80b protein_coding protein_coding MGP_CASTEiJ_T0078493.1 MGP_CASTEiJ_G0030010.1 mouse_genomes_project 6 83250718 83253941 - MGP_CASTEiJ_P0078493 Ino80b protein_coding protein_coding MGP_CASTEiJ_T0078494.1 MGP_CASTEiJ_G0030010.1 mouse_genomes_project 6 83253324 83253780 - Ino80b protein_coding retained_intron MGP_CASTEiJ_T0077074.1 MGP_CASTEiJ_G0029658.1 mouse_genomes_project 6 31995069 32025438 + MGP_CASTEiJ_P0077074 Bpgm protein_coding protein_coding MGP_CASTEiJ_T0077075.1 MGP_CASTEiJ_G0029658.1 mouse_genomes_project 6 31995218 32007948 + Bpgm protein_coding retained_intron MGP_CASTEiJ_T0077076.1 MGP_CASTEiJ_G0029658.1 mouse_genomes_project 6 31995314 32006552 + MGP_CASTEiJ_P0077076 Bpgm protein_coding protein_coding MGP_CASTEiJ_T0077077.1 MGP_CASTEiJ_G0029658.1 mouse_genomes_project 6 31995341 32006612 + MGP_CASTEiJ_P0077077 Bpgm protein_coding protein_coding MGP_CASTEiJ_T0077078.1 MGP_CASTEiJ_G0029658.1 mouse_genomes_project 6 31996004 32006713 + MGP_CASTEiJ_P0077078 Bpgm protein_coding protein_coding MGP_CASTEiJ_T0014831.1 MGP_CASTEiJ_G0012994.1 mouse_genomes_project 6 57362023 57362269 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099960.1 MGP_CASTEiJ_G0036873.1 mouse_genomes_project 6 78829295 78829459 + Gm23727 snRNA snRNA MGP_CASTEiJ_T0008329.1 MGP_CASTEiJ_G0006755.1 mouse_genomes_project 6 28763753 28779386 + Gm14532 lincRNA lincRNA MGP_CASTEiJ_T0078403.1 MGP_CASTEiJ_G0029991.1 mouse_genomes_project 6 82101641 82156095 + MGP_CASTEiJ_P0078403 Eva1a protein_coding protein_coding MGP_CASTEiJ_T0078404.1 MGP_CASTEiJ_G0029991.1 mouse_genomes_project 6 82102225 82157301 + MGP_CASTEiJ_P0078404 Eva1a protein_coding protein_coding MGP_CASTEiJ_T0078405.1 MGP_CASTEiJ_G0029991.1 mouse_genomes_project 6 82102290 82107715 + Eva1a protein_coding processed_transcript MGP_CASTEiJ_T0078406.1 MGP_CASTEiJ_G0029991.1 mouse_genomes_project 6 82112844 82156360 + MGP_CASTEiJ_P0078406 Eva1a protein_coding protein_coding MGP_CASTEiJ_T0080715.1 MGP_CASTEiJ_G0030453.1 mouse_genomes_project 6 134170661 134171592 - MGP_CASTEiJ_P0080715 Tas2r114 protein_coding protein_coding MGP_CASTEiJ_T0014762.1 MGP_CASTEiJ_G0012925.1 mouse_genomes_project 6 30098520 30101081 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081215.1 MGP_CASTEiJ_G0030563.1 mouse_genomes_project 6 149757854 149819467 + MGP_CASTEiJ_P0081215 Stk38l protein_coding protein_coding MGP_CASTEiJ_T0081216.1 MGP_CASTEiJ_G0030563.1 mouse_genomes_project 6 149757895 149817198 + MGP_CASTEiJ_P0081216 Stk38l protein_coding protein_coding MGP_CASTEiJ_T0081217.1 MGP_CASTEiJ_G0030563.1 mouse_genomes_project 6 149758165 149796521 + MGP_CASTEiJ_P0081217 Stk38l protein_coding protein_coding MGP_CASTEiJ_T0000197.1 MGP_CASTEiJ_G0000149.1 mouse_genomes_project 6 69481388 69482113 - MGP_CASTEiJ_P0000197 Igkv1-35 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000198.1 MGP_CASTEiJ_G0000149.1 mouse_genomes_project 6 69481388 69482113 - MGP_CASTEiJ_P0000198 Igkv1-35 IG_V_gene IG_V_gene MGP_CASTEiJ_T0015044.1 MGP_CASTEiJ_G0013207.1 mouse_genomes_project 6 129677447 129680439 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098632.1 MGP_CASTEiJ_G0035563.1 mouse_genomes_project 6 95699090 95699233 - Gm24601 rRNA rRNA MGP_CASTEiJ_T0008396.1 MGP_CASTEiJ_G0006800.1 mouse_genomes_project 6 52260067 52262244 + Gm16499 lincRNA lincRNA MGP_CASTEiJ_T0008397.1 MGP_CASTEiJ_G0006800.1 mouse_genomes_project 6 52260068 52260134 + Gm16499 lincRNA lincRNA MGP_CASTEiJ_T0077701.1 MGP_CASTEiJ_G0029822.1 mouse_genomes_project 6 47526976 47550053 + MGP_CASTEiJ_P0077701 Fam221a protein_coding protein_coding MGP_CASTEiJ_T0077702.1 MGP_CASTEiJ_G0029822.1 mouse_genomes_project 6 47527133 47535124 + MGP_CASTEiJ_P0077702 Fam221a protein_coding protein_coding MGP_CASTEiJ_T0077703.1 MGP_CASTEiJ_G0029822.1 mouse_genomes_project 6 47527146 47548371 + MGP_CASTEiJ_P0077703 Fam221a protein_coding protein_coding MGP_CASTEiJ_T0077704.1 MGP_CASTEiJ_G0029822.1 mouse_genomes_project 6 47537789 47544934 + Fam221a protein_coding processed_transcript MGP_CASTEiJ_T0077705.1 MGP_CASTEiJ_G0029822.1 mouse_genomes_project 6 47544730 47548777 + Fam221a protein_coding retained_intron MGP_CASTEiJ_T0077706.1 MGP_CASTEiJ_G0029822.1 mouse_genomes_project 6 47546965 47548722 + Fam221a protein_coding retained_intron MGP_CASTEiJ_T0001997.1 MGP_CASTEiJ_G0001918.1 mouse_genomes_project 6 88473816 88474857 - TEC TEC MGP_CASTEiJ_T0080999.1 MGP_CASTEiJ_G0030524.1 mouse_genomes_project 6 144325826 144374500 + MGP_CASTEiJ_P0080999 Slco1c1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081000.1 MGP_CASTEiJ_G0030524.1 mouse_genomes_project 6 144325844 144374516 + MGP_CASTEiJ_P0081000 Slco1c1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081001.1 MGP_CASTEiJ_G0030524.1 mouse_genomes_project 6 144325844 144374324 + MGP_CASTEiJ_P0081001 Slco1c1 protein_coding protein_coding MGP_CASTEiJ_T0081002.1 MGP_CASTEiJ_G0030524.1 mouse_genomes_project 6 144325993 144374916 + MGP_CASTEiJ_P0081002 Slco1c1 protein_coding protein_coding MGP_CASTEiJ_T0081003.1 MGP_CASTEiJ_G0030524.1 mouse_genomes_project 6 144350317 144352615 + Slco1c1 protein_coding retained_intron MGP_CASTEiJ_T0079064.1 MGP_CASTEiJ_G0030123.1 mouse_genomes_project 6 90985069 91000718 + MGP_CASTEiJ_P0079064 Zxdc protein_coding protein_coding MGP_CASTEiJ_T0079065.1 MGP_CASTEiJ_G0030123.1 mouse_genomes_project 6 90985071 91021032 + MGP_CASTEiJ_P0079065 Zxdc protein_coding protein_coding MGP_CASTEiJ_T0079066.1 MGP_CASTEiJ_G0030123.1 mouse_genomes_project 6 90985185 90999849 + MGP_CASTEiJ_P0079066 Zxdc protein_coding protein_coding MGP_CASTEiJ_T0079067.1 MGP_CASTEiJ_G0030123.1 mouse_genomes_project 6 90985190 90998739 + MGP_CASTEiJ_P0079067 Zxdc protein_coding protein_coding MGP_CASTEiJ_T0079068.1 MGP_CASTEiJ_G0030123.1 mouse_genomes_project 6 90985195 90990129 + Zxdc protein_coding retained_intron MGP_CASTEiJ_T0102422.1 MGP_CASTEiJ_G0039147.1 mouse_genomes_project 6 131369954 131370067 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0079703.1 MGP_CASTEiJ_G0030239.1 mouse_genomes_project 6 117128335 117144822 - Raf1 protein_coding retained_intron MGP_CASTEiJ_T0079704.1 MGP_CASTEiJ_G0030239.1 mouse_genomes_project 6 117128800 117190179 - MGP_CASTEiJ_P0079704 Raf1 protein_coding protein_coding MGP_CASTEiJ_T0079705.1 MGP_CASTEiJ_G0030239.1 mouse_genomes_project 6 117128800 117189508 - MGP_CASTEiJ_P0079705 Raf1 protein_coding protein_coding MGP_CASTEiJ_T0079706.1 MGP_CASTEiJ_G0030239.1 mouse_genomes_project 6 117128828 117132043 - MGP_CASTEiJ_P0079706 Raf1 protein_coding protein_coding MGP_CASTEiJ_T0079707.1 MGP_CASTEiJ_G0030239.1 mouse_genomes_project 6 117129459 117130537 - Raf1 protein_coding retained_intron MGP_CASTEiJ_T0079708.1 MGP_CASTEiJ_G0030239.1 mouse_genomes_project 6 117129812 117133776 - MGP_CASTEiJ_P0079708 Raf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079709.1 MGP_CASTEiJ_G0030239.1 mouse_genomes_project 6 117130483 117140824 - Raf1 protein_coding retained_intron MGP_CASTEiJ_T0079710.1 MGP_CASTEiJ_G0030239.1 mouse_genomes_project 6 117132033 117137235 - Raf1 protein_coding retained_intron MGP_CASTEiJ_T0079711.1 MGP_CASTEiJ_G0030239.1 mouse_genomes_project 6 117132043 117137273 - Raf1 protein_coding retained_intron MGP_CASTEiJ_T0079712.1 MGP_CASTEiJ_G0030239.1 mouse_genomes_project 6 117133754 117143093 - MGP_CASTEiJ_P0079712 Raf1 protein_coding protein_coding MGP_CASTEiJ_T0079713.1 MGP_CASTEiJ_G0030239.1 mouse_genomes_project 6 117140296 117190179 - Raf1 protein_coding retained_intron MGP_CASTEiJ_T0077456.1 MGP_CASTEiJ_G0029758.1 mouse_genomes_project 6 40503550 40528610 - MGP_CASTEiJ_P0077456 Tcaf2 protein_coding protein_coding MGP_CASTEiJ_T0077457.1 MGP_CASTEiJ_G0029758.1 mouse_genomes_project 6 40506765 40509893 - Tcaf2 protein_coding retained_intron MGP_CASTEiJ_T0004866.1 MGP_CASTEiJ_G0004176.1 mouse_genomes_project 6 84303695 84316236 - Gm15475 antisense antisense MGP_CASTEiJ_T0008305.1 MGP_CASTEiJ_G0006740.1 mouse_genomes_project 6 14096649 14104239 + D830026I12Rik lincRNA lincRNA MGP_CASTEiJ_T0008306.1 MGP_CASTEiJ_G0006740.1 mouse_genomes_project 6 14097009 14105145 + D830026I12Rik lincRNA lincRNA MGP_CASTEiJ_T0008307.1 MGP_CASTEiJ_G0006740.1 mouse_genomes_project 6 14097024 14110155 + D830026I12Rik lincRNA lincRNA MGP_CASTEiJ_T0014775.1 MGP_CASTEiJ_G0012938.1 mouse_genomes_project 6 37676404 37676982 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004936.1 MGP_CASTEiJ_G0004221.1 mouse_genomes_project 6 122308427 122309207 + antisense antisense MGP_CASTEiJ_T0001841.1 MGP_CASTEiJ_G0001762.1 mouse_genomes_project 6 1207399 1208122 - TEC TEC MGP_CASTEiJ_T0076810.1 MGP_CASTEiJ_G0029616.1 mouse_genomes_project 6 26569465 26578061 + MGP_CASTEiJ_P0076810 Fam71f2 protein_coding protein_coding MGP_CASTEiJ_T0076811.1 MGP_CASTEiJ_G0029616.1 mouse_genomes_project 6 26571007 26582797 + MGP_CASTEiJ_P0076811 Fam71f2 protein_coding protein_coding MGP_CASTEiJ_T0076812.1 MGP_CASTEiJ_G0029616.1 mouse_genomes_project 6 26571009 26582792 + MGP_CASTEiJ_P0076812 Fam71f2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078172.1 MGP_CASTEiJ_G0029942.1 mouse_genomes_project 6 70698733 70824231 - MGP_CASTEiJ_P0078172 Smyd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0078174.1 MGP_CASTEiJ_G0029942.1 mouse_genomes_project 6 70746554 70815069 - MGP_CASTEiJ_P0078174 Smyd1 protein_coding protein_coding MGP_CASTEiJ_T0078175.1 MGP_CASTEiJ_G0029942.1 mouse_genomes_project 6 70746556 70815041 - MGP_CASTEiJ_P0078175 Smyd1 protein_coding protein_coding MGP_CASTEiJ_T0078176.1 MGP_CASTEiJ_G0029942.1 mouse_genomes_project 6 70747962 70874555 - MGP_CASTEiJ_P0078176 Smyd1 protein_coding protein_coding MGP_CASTEiJ_T0078177.1 MGP_CASTEiJ_G0029942.1 mouse_genomes_project 6 70748116 70749463 - MGP_CASTEiJ_P0078177 Smyd1 protein_coding protein_coding MGP_CASTEiJ_T0078178.1 MGP_CASTEiJ_G0029942.1 mouse_genomes_project 6 70810566 70815020 - MGP_CASTEiJ_P0078178 Smyd1 protein_coding protein_coding MGP_CASTEiJ_T0078183.1 MGP_CASTEiJ_G0029942.1 mouse_genomes_project 6 70862808 70874528 - MGP_CASTEiJ_P0078183 Smyd1 protein_coding protein_coding MGP_CASTEiJ_T0076471.1 MGP_CASTEiJ_G0029549.1 mouse_genomes_project 6 5441181 5591264 - MGP_CASTEiJ_P0076471 Ica1 protein_coding protein_coding MGP_CASTEiJ_T0076472.1 MGP_CASTEiJ_G0029549.1 mouse_genomes_project 6 5441181 5569228 - MGP_CASTEiJ_P0076472 Ica1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076473.1 MGP_CASTEiJ_G0029549.1 mouse_genomes_project 6 5441181 5591594 - MGP_CASTEiJ_P0076473 Ica1 protein_coding protein_coding MGP_CASTEiJ_T0076474.1 MGP_CASTEiJ_G0029549.1 mouse_genomes_project 6 5441181 5591549 - MGP_CASTEiJ_P0076474 Ica1 protein_coding protein_coding MGP_CASTEiJ_T0076475.1 MGP_CASTEiJ_G0029549.1 mouse_genomes_project 6 5441353 5457310 - Ica1 protein_coding processed_transcript MGP_CASTEiJ_T0076476.1 MGP_CASTEiJ_G0029549.1 mouse_genomes_project 6 5467835 5591264 - MGP_CASTEiJ_P0076476 Ica1 protein_coding protein_coding MGP_CASTEiJ_T0076477.1 MGP_CASTEiJ_G0029549.1 mouse_genomes_project 6 5468540 5481837 - MGP_CASTEiJ_P0076477 Ica1 protein_coding protein_coding MGP_CASTEiJ_T0076478.1 MGP_CASTEiJ_G0029549.1 mouse_genomes_project 6 5468550 5591597 - MGP_CASTEiJ_P0076478 Ica1 protein_coding protein_coding MGP_CASTEiJ_T0076479.1 MGP_CASTEiJ_G0029549.1 mouse_genomes_project 6 5468551 5544910 - MGP_CASTEiJ_P0076479 Ica1 protein_coding protein_coding MGP_CASTEiJ_T0076480.1 MGP_CASTEiJ_G0029549.1 mouse_genomes_project 6 5538247 5591598 - Ica1 protein_coding processed_transcript MGP_CASTEiJ_T0076481.1 MGP_CASTEiJ_G0029549.1 mouse_genomes_project 6 5559729 5582540 - MGP_CASTEiJ_P0076481 Ica1 protein_coding protein_coding MGP_CASTEiJ_T0076482.1 MGP_CASTEiJ_G0029549.1 mouse_genomes_project 6 5565485 5591233 - MGP_CASTEiJ_P0076482 Ica1 protein_coding protein_coding MGP_CASTEiJ_T0098993.1 MGP_CASTEiJ_G0035913.1 mouse_genomes_project 6 87419557 87420205 + Gm44091 sense_intronic sense_intronic MGP_CASTEiJ_T0080634.1 MGP_CASTEiJ_G0030425.1 mouse_genomes_project 6 131868043 131878193 - MGP_CASTEiJ_P0080634 Clec12b protein_coding protein_coding MGP_CASTEiJ_T0080635.1 MGP_CASTEiJ_G0030425.1 mouse_genomes_project 6 131868331 131878564 - MGP_CASTEiJ_P0080635 Clec12b protein_coding protein_coding MGP_CASTEiJ_T0080679.1 MGP_CASTEiJ_G0030436.1 mouse_genomes_project 6 132182563 132195515 - MGP_CASTEiJ_P0080679 protein_coding protein_coding MGP_CASTEiJ_T0077243.1 MGP_CASTEiJ_G0029688.1 mouse_genomes_project 6 36416524 36437493 + MGP_CASTEiJ_P0077243 Clec2l protein_coding protein_coding MGP_CASTEiJ_T0101155.1 MGP_CASTEiJ_G0038068.1 mouse_genomes_project 6 10918114 10918230 + Gm23760 snoRNA snoRNA MGP_CASTEiJ_T0077475.1 MGP_CASTEiJ_G0029766.1 mouse_genomes_project 6 40796249 40797182 + MGP_CASTEiJ_P0077475 Olfr447 protein_coding protein_coding MGP_CASTEiJ_T0004767.1 MGP_CASTEiJ_G0004106.1 mouse_genomes_project 6 5158929 5170337 - Gm16055 antisense antisense MGP_CASTEiJ_T0014868.1 MGP_CASTEiJ_G0013031.1 mouse_genomes_project 6 66394587 66394882 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080200.1 MGP_CASTEiJ_G0030336.1 mouse_genomes_project 6 126429899 126439390 - MGP_CASTEiJ_P0080200 1700013D24Rik protein_coding protein_coding MGP_CASTEiJ_T0080201.1 MGP_CASTEiJ_G0030336.1 mouse_genomes_project 6 126429904 126439373 - 1700013D24Rik protein_coding lincRNA MGP_CASTEiJ_T0080726.1 MGP_CASTEiJ_G0030463.1 mouse_genomes_project 6 135295301 135296337 + MGP_CASTEiJ_P0080726 Tas2r131 protein_coding protein_coding MGP_CASTEiJ_T0001999.1 MGP_CASTEiJ_G0001920.1 mouse_genomes_project 6 88726343 88726601 - TEC TEC MGP_CASTEiJ_T0077634.1 MGP_CASTEiJ_G0029806.1 mouse_genomes_project 6 46840089 46874978 + MGP_CASTEiJ_P0077634 Gm28053 protein_coding protein_coding MGP_CASTEiJ_T0077636.1 MGP_CASTEiJ_G0029806.1 mouse_genomes_project 6 46840136 46851643 + Gm28053 protein_coding retained_intron MGP_CASTEiJ_T0077640.1 MGP_CASTEiJ_G0029806.1 mouse_genomes_project 6 46860963 46875022 + MGP_CASTEiJ_P0077640 Gm28053 protein_coding protein_coding MGP_CASTEiJ_T0077372.1 MGP_CASTEiJ_G0029730.1 mouse_genomes_project 6 39446629 39461651 + MGP_CASTEiJ_P0077372 Ephb6 protein_coding protein_coding MGP_CASTEiJ_T0077373.1 MGP_CASTEiJ_G0029730.1 mouse_genomes_project 6 39454438 39455752 + Ephb6 protein_coding processed_transcript MGP_CASTEiJ_T0077374.1 MGP_CASTEiJ_G0029730.1 mouse_genomes_project 6 39455832 39457899 + MGP_CASTEiJ_P0077374 Ephb6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077375.1 MGP_CASTEiJ_G0029730.1 mouse_genomes_project 6 39461084 39461649 + MGP_CASTEiJ_P0077375 Ephb6 protein_coding protein_coding MGP_CASTEiJ_T0014723.1 MGP_CASTEiJ_G0012886.1 mouse_genomes_project 6 7604698 7605588 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077340.1 MGP_CASTEiJ_G0029709.1 mouse_genomes_project 6 38394024 38398709 - MGP_CASTEiJ_P0077340 Prss37 protein_coding protein_coding MGP_CASTEiJ_T0077341.1 MGP_CASTEiJ_G0029709.1 mouse_genomes_project 6 38398369 38398684 - Prss37 protein_coding processed_transcript MGP_CASTEiJ_T0080531.1 MGP_CASTEiJ_G0030399.1 mouse_genomes_project 6 129984607 130071927 - MGP_CASTEiJ_P0080531 Prmt8 protein_coding protein_coding MGP_CASTEiJ_T0080532.1 MGP_CASTEiJ_G0030399.1 mouse_genomes_project 6 129993244 130032132 - MGP_CASTEiJ_P0080532 Prmt8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076451.1 MGP_CASTEiJ_G0029544.1 mouse_genomes_project 6 5011591 5040672 + MGP_CASTEiJ_P0076451 Mios protein_coding protein_coding MGP_CASTEiJ_T0076452.1 MGP_CASTEiJ_G0029544.1 mouse_genomes_project 6 5030876 5040666 + Mios protein_coding retained_intron MGP_CASTEiJ_T0076453.1 MGP_CASTEiJ_G0029544.1 mouse_genomes_project 6 5033743 5040666 + Mios protein_coding retained_intron MGP_CASTEiJ_T0010511.1 MGP_CASTEiJ_G0008699.1 mouse_genomes_project 6 130428749 130428859 - Gm26338 miRNA miRNA MGP_CASTEiJ_T0099961.1 MGP_CASTEiJ_G0036874.1 mouse_genomes_project 6 81684996 81685155 + Gm26264 snRNA snRNA MGP_CASTEiJ_T0004834.1 MGP_CASTEiJ_G0004156.1 mouse_genomes_project 6 62564511 62567784 - antisense antisense MGP_CASTEiJ_T0004957.1 MGP_CASTEiJ_G0004240.1 mouse_genomes_project 6 130769945 130792023 - Gm15862 antisense antisense MGP_CASTEiJ_T0078868.1 MGP_CASTEiJ_G0030081.1 mouse_genomes_project 6 87923067 87967686 - Arhgap25 protein_coding retained_intron MGP_CASTEiJ_T0078869.1 MGP_CASTEiJ_G0030081.1 mouse_genomes_project 6 87923236 88004199 - MGP_CASTEiJ_P0078869 Arhgap25 protein_coding protein_coding MGP_CASTEiJ_T0078870.1 MGP_CASTEiJ_G0030081.1 mouse_genomes_project 6 87924655 87928185 - Arhgap25 protein_coding retained_intron MGP_CASTEiJ_T0076598.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14618799 14758396 + St7 protein_coding retained_intron MGP_CASTEiJ_T0076599.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14619822 14888882 + MGP_CASTEiJ_P0076599 St7 protein_coding protein_coding MGP_CASTEiJ_T0076600.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14619869 14888882 + MGP_CASTEiJ_P0076600 St7 protein_coding protein_coding MGP_CASTEiJ_T0076601.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14619907 14888827 + MGP_CASTEiJ_P0076601 St7 protein_coding protein_coding MGP_CASTEiJ_T0076602.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14619907 14888827 + MGP_CASTEiJ_P0076602 St7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076603.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14619907 14797166 + MGP_CASTEiJ_P0076603 St7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076604.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14619907 14888885 + MGP_CASTEiJ_P0076604 St7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076605.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14619907 14888827 + MGP_CASTEiJ_P0076605 St7 protein_coding protein_coding MGP_CASTEiJ_T0076606.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14620042 14888827 + MGP_CASTEiJ_P0076606 St7 protein_coding protein_coding MGP_CASTEiJ_T0076607.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14673369 14888827 + MGP_CASTEiJ_P0076607 St7 protein_coding protein_coding MGP_CASTEiJ_T0076608.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14673369 14888827 + MGP_CASTEiJ_P0076608 St7 protein_coding protein_coding MGP_CASTEiJ_T0076609.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14680511 14851518 + St7 protein_coding processed_transcript MGP_CASTEiJ_T0076610.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14680511 14888885 + MGP_CASTEiJ_P0076610 St7 protein_coding protein_coding MGP_CASTEiJ_T0076611.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14680557 14888880 + MGP_CASTEiJ_P0076611 St7 protein_coding protein_coding MGP_CASTEiJ_T0076612.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14680637 14776955 + St7 protein_coding retained_intron MGP_CASTEiJ_T0076613.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14680674 14888882 + St7 protein_coding retained_intron MGP_CASTEiJ_T0076614.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14680737 14888861 + St7 protein_coding retained_intron MGP_CASTEiJ_T0076615.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14781465 14789398 + St7 protein_coding processed_transcript MGP_CASTEiJ_T0076616.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14781484 14849949 + St7 protein_coding processed_transcript MGP_CASTEiJ_T0076617.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14797121 14851504 + St7 protein_coding processed_transcript MGP_CASTEiJ_T0076618.1 MGP_CASTEiJ_G0029570.1 mouse_genomes_project 6 14850594 14888796 + St7 protein_coding processed_transcript MGP_CASTEiJ_T0001945.1 MGP_CASTEiJ_G0001866.1 mouse_genomes_project 6 72314841 72316043 - TEC TEC MGP_CASTEiJ_T0078682.1 MGP_CASTEiJ_G0030042.1 mouse_genomes_project 6 85743822 85747989 - Pradc1 protein_coding retained_intron MGP_CASTEiJ_T0078683.1 MGP_CASTEiJ_G0030042.1 mouse_genomes_project 6 85743823 85748036 - MGP_CASTEiJ_P0078683 Pradc1 protein_coding protein_coding MGP_CASTEiJ_T0078684.1 MGP_CASTEiJ_G0030042.1 mouse_genomes_project 6 85743965 85747967 - MGP_CASTEiJ_P0078684 Pradc1 protein_coding protein_coding MGP_CASTEiJ_T0078685.1 MGP_CASTEiJ_G0030042.1 mouse_genomes_project 6 85743996 85748733 - Pradc1 protein_coding processed_transcript MGP_CASTEiJ_T0078686.1 MGP_CASTEiJ_G0030042.1 mouse_genomes_project 6 85744321 85748012 - Pradc1 protein_coding processed_transcript MGP_CASTEiJ_T0078687.1 MGP_CASTEiJ_G0030042.1 mouse_genomes_project 6 85744336 85748044 - Pradc1 protein_coding retained_intron MGP_CASTEiJ_T0078688.1 MGP_CASTEiJ_G0030042.1 mouse_genomes_project 6 85744468 85748001 - Pradc1 protein_coding processed_transcript MGP_CASTEiJ_T0080283.1 MGP_CASTEiJ_G0030350.1 mouse_genomes_project 6 126908607 126910565 + MGP_CASTEiJ_P0080283 Spsb2 protein_coding protein_coding MGP_CASTEiJ_T0080284.1 MGP_CASTEiJ_G0030350.1 mouse_genomes_project 6 126908831 126910283 + MGP_CASTEiJ_P0080284 Spsb2 protein_coding protein_coding MGP_CASTEiJ_T0080285.1 MGP_CASTEiJ_G0030350.1 mouse_genomes_project 6 126908852 126910565 + MGP_CASTEiJ_P0080285 Spsb2 protein_coding protein_coding MGP_CASTEiJ_T0080286.1 MGP_CASTEiJ_G0030350.1 mouse_genomes_project 6 126908865 126909885 + MGP_CASTEiJ_P0080286 Spsb2 protein_coding protein_coding MGP_CASTEiJ_T0080287.1 MGP_CASTEiJ_G0030350.1 mouse_genomes_project 6 126909244 126910565 + MGP_CASTEiJ_P0080287 Spsb2 protein_coding protein_coding MGP_CASTEiJ_T0001915.1 MGP_CASTEiJ_G0001836.1 mouse_genomes_project 6 49154190 49155160 + TEC TEC MGP_CASTEiJ_T0014763.1 MGP_CASTEiJ_G0012926.1 mouse_genomes_project 6 30703153 30703937 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079342.1 MGP_CASTEiJ_G0030175.1 mouse_genomes_project 6 101914954 101964610 + MGP_CASTEiJ_P0079342 protein_coding protein_coding MGP_CASTEiJ_T0079343.1 MGP_CASTEiJ_G0030175.1 mouse_genomes_project 6 101938508 101957761 + protein_coding retained_intron MGP_CASTEiJ_T0079344.1 MGP_CASTEiJ_G0030175.1 mouse_genomes_project 6 101957899 101960225 + protein_coding retained_intron MGP_CASTEiJ_T0001871.1 MGP_CASTEiJ_G0001792.1 mouse_genomes_project 6 25463518 25468082 - TEC TEC MGP_CASTEiJ_T0014773.1 MGP_CASTEiJ_G0012936.1 mouse_genomes_project 6 36125566 36125988 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078216.1 MGP_CASTEiJ_G0029951.1 mouse_genomes_project 6 71293828 71413032 + MGP_CASTEiJ_P0078216 Reep1 protein_coding protein_coding MGP_CASTEiJ_T0004829.1 MGP_CASTEiJ_G0004151.1 mouse_genomes_project 6 52932159 52942989 - Gm44026 antisense antisense MGP_CASTEiJ_T0076535.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 11723808 12293553 + MGP_CASTEiJ_P0076535 Foxp2 protein_coding protein_coding MGP_CASTEiJ_T0076536.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 11723841 12261777 + Foxp2 protein_coding retained_intron MGP_CASTEiJ_T0076537.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 11723904 11806252 + Foxp2 protein_coding processed_transcript MGP_CASTEiJ_T0076538.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 11723930 12129291 + MGP_CASTEiJ_P0076538 Foxp2 protein_coding protein_coding MGP_CASTEiJ_T0076539.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 11723931 12130273 + Foxp2 protein_coding retained_intron MGP_CASTEiJ_T0076540.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 11725964 12037342 + Foxp2 protein_coding processed_transcript MGP_CASTEiJ_T0076541.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 12023470 12039752 + MGP_CASTEiJ_P0076541 Foxp2 protein_coding protein_coding MGP_CASTEiJ_T0076542.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 12024312 12289600 + MGP_CASTEiJ_P0076542 Foxp2 protein_coding protein_coding MGP_CASTEiJ_T0076543.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 12024312 12292777 + MGP_CASTEiJ_P0076543 Foxp2 protein_coding protein_coding MGP_CASTEiJ_T0076544.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 12024312 12289881 + MGP_CASTEiJ_P0076544 Foxp2 protein_coding protein_coding MGP_CASTEiJ_T0076545.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 12024369 12242183 + MGP_CASTEiJ_P0076545 Foxp2 protein_coding protein_coding MGP_CASTEiJ_T0076546.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 12037331 12245977 + Foxp2 protein_coding retained_intron MGP_CASTEiJ_T0076547.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 12037333 12227878 + MGP_CASTEiJ_P0076547 Foxp2 protein_coding protein_coding MGP_CASTEiJ_T0076548.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 12037333 12255515 + MGP_CASTEiJ_P0076548 Foxp2 protein_coding protein_coding MGP_CASTEiJ_T0076549.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 12037346 12255515 + MGP_CASTEiJ_P0076549 Foxp2 protein_coding protein_coding MGP_CASTEiJ_T0076550.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 12095346 12129291 + Foxp2 protein_coding processed_transcript MGP_CASTEiJ_T0076551.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 12167508 12168692 + Foxp2 protein_coding retained_intron MGP_CASTEiJ_T0076552.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 12224753 12226153 + Foxp2 protein_coding processed_transcript MGP_CASTEiJ_T0076553.1 MGP_CASTEiJ_G0029562.1 mouse_genomes_project 6 12224753 12290625 + MGP_CASTEiJ_P0076553 Foxp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076798.1 MGP_CASTEiJ_G0029614.1 mouse_genomes_project 6 26468415 26485719 - MGP_CASTEiJ_P0076798 Impdh1 protein_coding protein_coding MGP_CASTEiJ_T0076799.1 MGP_CASTEiJ_G0029614.1 mouse_genomes_project 6 26468418 26481638 - MGP_CASTEiJ_P0076799 Impdh1 protein_coding protein_coding MGP_CASTEiJ_T0076800.1 MGP_CASTEiJ_G0029614.1 mouse_genomes_project 6 26468418 26485752 - MGP_CASTEiJ_P0076800 Impdh1 protein_coding protein_coding MGP_CASTEiJ_T0076801.1 MGP_CASTEiJ_G0029614.1 mouse_genomes_project 6 26468418 26481686 - MGP_CASTEiJ_P0076801 Impdh1 protein_coding protein_coding MGP_CASTEiJ_T0076802.1 MGP_CASTEiJ_G0029614.1 mouse_genomes_project 6 26468419 26485730 - MGP_CASTEiJ_P0076802 Impdh1 protein_coding protein_coding MGP_CASTEiJ_T0076803.1 MGP_CASTEiJ_G0029614.1 mouse_genomes_project 6 26468426 26471390 - MGP_CASTEiJ_P0076803 Impdh1 protein_coding protein_coding MGP_CASTEiJ_T0076804.1 MGP_CASTEiJ_G0029614.1 mouse_genomes_project 6 26472559 26474433 - Impdh1 protein_coding retained_intron MGP_CASTEiJ_T0076805.1 MGP_CASTEiJ_G0029614.1 mouse_genomes_project 6 26473104 26485665 - MGP_CASTEiJ_P0076805 Impdh1 protein_coding protein_coding MGP_CASTEiJ_T0076806.1 MGP_CASTEiJ_G0029614.1 mouse_genomes_project 6 26476214 26478999 - Impdh1 protein_coding retained_intron MGP_CASTEiJ_T0076807.1 MGP_CASTEiJ_G0029614.1 mouse_genomes_project 6 26476380 26485317 - MGP_CASTEiJ_P0076807 Impdh1 protein_coding protein_coding MGP_CASTEiJ_T0078255.1 MGP_CASTEiJ_G0029956.1 mouse_genomes_project 6 71719046 71777370 + MGP_CASTEiJ_P0078255 St3gal5 protein_coding protein_coding MGP_CASTEiJ_T0078256.1 MGP_CASTEiJ_G0029956.1 mouse_genomes_project 6 71719077 71777370 + MGP_CASTEiJ_P0078256 St3gal5 protein_coding protein_coding MGP_CASTEiJ_T0078257.1 MGP_CASTEiJ_G0029956.1 mouse_genomes_project 6 71719211 71767392 + MGP_CASTEiJ_P0078257 St3gal5 protein_coding protein_coding MGP_CASTEiJ_T0078258.1 MGP_CASTEiJ_G0029956.1 mouse_genomes_project 6 71736644 71762478 + MGP_CASTEiJ_P0078258 St3gal5 protein_coding protein_coding MGP_CASTEiJ_T0078944.1 MGP_CASTEiJ_G0030097.1 mouse_genomes_project 6 88767396 88970243 - MGP_CASTEiJ_P0078944 Eefsec protein_coding protein_coding MGP_CASTEiJ_T0078945.1 MGP_CASTEiJ_G0030097.1 mouse_genomes_project 6 88767935 88970231 - MGP_CASTEiJ_P0078945 Eefsec protein_coding protein_coding MGP_CASTEiJ_T0078946.1 MGP_CASTEiJ_G0030097.1 mouse_genomes_project 6 88768335 88970218 - MGP_CASTEiJ_P0078946 Eefsec protein_coding protein_coding MGP_CASTEiJ_T0078947.1 MGP_CASTEiJ_G0030097.1 mouse_genomes_project 6 88793322 88970206 - MGP_CASTEiJ_P0078947 Eefsec protein_coding protein_coding MGP_CASTEiJ_T0078948.1 MGP_CASTEiJ_G0030097.1 mouse_genomes_project 6 88811204 88961848 - MGP_CASTEiJ_P0078948 Eefsec protein_coding protein_coding MGP_CASTEiJ_T0078949.1 MGP_CASTEiJ_G0030097.1 mouse_genomes_project 6 88811387 88970188 - MGP_CASTEiJ_P0078949 Eefsec protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076827.1 MGP_CASTEiJ_G0029619.1 mouse_genomes_project 6 26672587 26678085 - MGP_CASTEiJ_P0076827 Opn1sw protein_coding protein_coding MGP_CASTEiJ_T0076828.1 MGP_CASTEiJ_G0029619.1 mouse_genomes_project 6 26674962 26678003 - MGP_CASTEiJ_P0076828 Opn1sw protein_coding protein_coding MGP_CASTEiJ_T0076829.1 MGP_CASTEiJ_G0029619.1 mouse_genomes_project 6 26676502 26677985 - Opn1sw protein_coding processed_transcript MGP_CASTEiJ_T0076830.1 MGP_CASTEiJ_G0029619.1 mouse_genomes_project 6 26676944 26685807 - MGP_CASTEiJ_P0076830 Opn1sw protein_coding protein_coding MGP_CASTEiJ_T0077602.1 MGP_CASTEiJ_G0029796.1 mouse_genomes_project 6 46705990 46707150 + MGP_CASTEiJ_P0077602 protein_coding protein_coding MGP_CASTEiJ_T0077603.1 MGP_CASTEiJ_G0029796.1 mouse_genomes_project 6 46706133 46707084 + protein_coding retained_intron MGP_CASTEiJ_T0078191.1 MGP_CASTEiJ_G0029948.1 mouse_genomes_project 6 71064393 71081351 + MGP_CASTEiJ_P0078191 Rnf103 protein_coding protein_coding MGP_CASTEiJ_T0078192.1 MGP_CASTEiJ_G0029948.1 mouse_genomes_project 6 71064409 71081351 + MGP_CASTEiJ_P0078192 Rnf103 protein_coding protein_coding MGP_CASTEiJ_T0078193.1 MGP_CASTEiJ_G0029948.1 mouse_genomes_project 6 71064502 71081233 + MGP_CASTEiJ_P0078193 Rnf103 protein_coding protein_coding MGP_CASTEiJ_T0078194.1 MGP_CASTEiJ_G0029948.1 mouse_genomes_project 6 71074396 71077677 + Rnf103 protein_coding retained_intron MGP_CASTEiJ_T0076774.1 MGP_CASTEiJ_G0029609.1 mouse_genomes_project 6 25727337 26130455 + MGP_CASTEiJ_P0076774 Snd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076775.1 MGP_CASTEiJ_G0029609.1 mouse_genomes_project 6 25727337 26141525 + MGP_CASTEiJ_P0076775 Snd1 protein_coding protein_coding MGP_CASTEiJ_T0076776.1 MGP_CASTEiJ_G0029609.1 mouse_genomes_project 6 25727348 26186181 + MGP_CASTEiJ_P0076776 Snd1 protein_coding protein_coding MGP_CASTEiJ_T0076777.1 MGP_CASTEiJ_G0029609.1 mouse_genomes_project 6 25727418 25729853 + Snd1 protein_coding retained_intron MGP_CASTEiJ_T0076778.1 MGP_CASTEiJ_G0029609.1 mouse_genomes_project 6 25727554 26046760 + MGP_CASTEiJ_P0076778 Snd1 protein_coding protein_coding MGP_CASTEiJ_T0076779.1 MGP_CASTEiJ_G0029609.1 mouse_genomes_project 6 25810976 25971527 + Snd1 protein_coding processed_transcript MGP_CASTEiJ_T0076781.1 MGP_CASTEiJ_G0029609.1 mouse_genomes_project 6 25951227 25953417 + Snd1 protein_coding processed_transcript MGP_CASTEiJ_T0076782.1 MGP_CASTEiJ_G0029609.1 mouse_genomes_project 6 25952045 25971537 + Snd1 protein_coding processed_transcript MGP_CASTEiJ_T0076783.1 MGP_CASTEiJ_G0029609.1 mouse_genomes_project 6 26013850 26127703 + Snd1 protein_coding processed_transcript MGP_CASTEiJ_T0076784.1 MGP_CASTEiJ_G0029609.1 mouse_genomes_project 6 26025713 26132926 + Snd1 protein_coding processed_transcript MGP_CASTEiJ_T0076786.1 MGP_CASTEiJ_G0029609.1 mouse_genomes_project 6 26084688 26141041 + MGP_CASTEiJ_P0076786 Snd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076787.1 MGP_CASTEiJ_G0029609.1 mouse_genomes_project 6 26101528 26133001 + Snd1 protein_coding processed_transcript MGP_CASTEiJ_T0076788.1 MGP_CASTEiJ_G0029609.1 mouse_genomes_project 6 26132735 26139222 + Snd1 protein_coding retained_intron MGP_CASTEiJ_T0002037.1 MGP_CASTEiJ_G0001958.1 mouse_genomes_project 6 102480450 102481409 - TEC TEC MGP_CASTEiJ_T0078627.1 MGP_CASTEiJ_G0030032.1 mouse_genomes_project 6 84204042 84429732 + MGP_CASTEiJ_P0078627 Dysf protein_coding protein_coding MGP_CASTEiJ_T0078628.1 MGP_CASTEiJ_G0030032.1 mouse_genomes_project 6 84204154 84429568 + MGP_CASTEiJ_P0078628 Dysf protein_coding protein_coding MGP_CASTEiJ_T0078629.1 MGP_CASTEiJ_G0030032.1 mouse_genomes_project 6 84204154 84429568 + MGP_CASTEiJ_P0078629 Dysf protein_coding protein_coding MGP_CASTEiJ_T0078630.1 MGP_CASTEiJ_G0030032.1 mouse_genomes_project 6 84204154 84429568 + MGP_CASTEiJ_P0078630 Dysf protein_coding protein_coding MGP_CASTEiJ_T0078631.1 MGP_CASTEiJ_G0030032.1 mouse_genomes_project 6 84204219 84429568 + MGP_CASTEiJ_P0078631 Dysf protein_coding protein_coding MGP_CASTEiJ_T0078632.1 MGP_CASTEiJ_G0030032.1 mouse_genomes_project 6 84204367 84429731 + MGP_CASTEiJ_P0078632 Dysf protein_coding protein_coding MGP_CASTEiJ_T0078633.1 MGP_CASTEiJ_G0030032.1 mouse_genomes_project 6 84215332 84429529 + MGP_CASTEiJ_P0078633 Dysf protein_coding protein_coding MGP_CASTEiJ_T0078634.1 MGP_CASTEiJ_G0030032.1 mouse_genomes_project 6 84215332 84429529 + MGP_CASTEiJ_P0078634 Dysf protein_coding protein_coding MGP_CASTEiJ_T0078635.1 MGP_CASTEiJ_G0030032.1 mouse_genomes_project 6 84215332 84429529 + MGP_CASTEiJ_P0078635 Dysf protein_coding protein_coding MGP_CASTEiJ_T0078636.1 MGP_CASTEiJ_G0030032.1 mouse_genomes_project 6 84215332 84429731 + MGP_CASTEiJ_P0078636 Dysf protein_coding protein_coding MGP_CASTEiJ_T0078637.1 MGP_CASTEiJ_G0030032.1 mouse_genomes_project 6 84215333 84429732 + MGP_CASTEiJ_P0078637 Dysf protein_coding protein_coding MGP_CASTEiJ_T0078638.1 MGP_CASTEiJ_G0030032.1 mouse_genomes_project 6 84215336 84429731 + MGP_CASTEiJ_P0078638 Dysf protein_coding protein_coding MGP_CASTEiJ_T0078639.1 MGP_CASTEiJ_G0030032.1 mouse_genomes_project 6 84314607 84321349 + Dysf protein_coding processed_transcript MGP_CASTEiJ_T0078640.1 MGP_CASTEiJ_G0030032.1 mouse_genomes_project 6 84315780 84326050 + Dysf protein_coding retained_intron MGP_CASTEiJ_T0078641.1 MGP_CASTEiJ_G0030032.1 mouse_genomes_project 6 84357240 84362924 + Dysf protein_coding processed_transcript MGP_CASTEiJ_T0078642.1 MGP_CASTEiJ_G0030032.1 mouse_genomes_project 6 84429155 84429713 + Dysf protein_coding processed_transcript MGP_CASTEiJ_T0099990.1 MGP_CASTEiJ_G0036903.1 mouse_genomes_project 6 152222445 152222549 - Gm23462 snRNA snRNA MGP_CASTEiJ_T0079936.1 MGP_CASTEiJ_G0030283.1 mouse_genomes_project 6 121300450 121590618 - MGP_CASTEiJ_P0079936 Erc1 protein_coding protein_coding MGP_CASTEiJ_T0079937.1 MGP_CASTEiJ_G0030283.1 mouse_genomes_project 6 121300458 121566073 - MGP_CASTEiJ_P0079937 Erc1 protein_coding protein_coding MGP_CASTEiJ_T0079938.1 MGP_CASTEiJ_G0030283.1 mouse_genomes_project 6 121302284 121590567 - MGP_CASTEiJ_P0079938 Erc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079939.1 MGP_CASTEiJ_G0030283.1 mouse_genomes_project 6 121303338 121590527 - MGP_CASTEiJ_P0079939 Erc1 protein_coding protein_coding MGP_CASTEiJ_T0079940.1 MGP_CASTEiJ_G0030283.1 mouse_genomes_project 6 121304187 121590583 - MGP_CASTEiJ_P0079940 Erc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079941.1 MGP_CASTEiJ_G0030283.1 mouse_genomes_project 6 121304622 121481782 - MGP_CASTEiJ_P0079941 Erc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079942.1 MGP_CASTEiJ_G0030283.1 mouse_genomes_project 6 121304857 121590602 - MGP_CASTEiJ_P0079942 Erc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079943.1 MGP_CASTEiJ_G0030283.1 mouse_genomes_project 6 121304927 121590635 - MGP_CASTEiJ_P0079943 Erc1 protein_coding protein_coding MGP_CASTEiJ_T0079944.1 MGP_CASTEiJ_G0030283.1 mouse_genomes_project 6 121305142 121590557 - MGP_CASTEiJ_P0079944 Erc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079945.1 MGP_CASTEiJ_G0030283.1 mouse_genomes_project 6 121309285 121565801 - MGP_CASTEiJ_P0079945 Erc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079946.1 MGP_CASTEiJ_G0030283.1 mouse_genomes_project 6 121340069 121566688 - MGP_CASTEiJ_P0079946 Erc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079947.1 MGP_CASTEiJ_G0030283.1 mouse_genomes_project 6 121344347 121350197 - Erc1 protein_coding retained_intron MGP_CASTEiJ_T0079948.1 MGP_CASTEiJ_G0030283.1 mouse_genomes_project 6 121459380 121533075 - Erc1 protein_coding processed_transcript MGP_CASTEiJ_T0079949.1 MGP_CASTEiJ_G0030283.1 mouse_genomes_project 6 121508236 121590570 - MGP_CASTEiJ_P0079949 Erc1 protein_coding protein_coding MGP_CASTEiJ_T0079950.1 MGP_CASTEiJ_G0030283.1 mouse_genomes_project 6 121564832 121567314 - Erc1 protein_coding retained_intron MGP_CASTEiJ_T0077031.1 MGP_CASTEiJ_G0029650.1 mouse_genomes_project 6 30239299 30339222 - MGP_CASTEiJ_P0077031 Chchd3 protein_coding protein_coding MGP_CASTEiJ_T0077032.1 MGP_CASTEiJ_G0029650.1 mouse_genomes_project 6 30240541 30510464 - MGP_CASTEiJ_P0077032 Chchd3 protein_coding protein_coding MGP_CASTEiJ_T0077033.1 MGP_CASTEiJ_G0029650.1 mouse_genomes_project 6 30240548 30510440 - MGP_CASTEiJ_P0077033 Chchd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077034.1 MGP_CASTEiJ_G0029650.1 mouse_genomes_project 6 30240961 30346247 - Chchd3 protein_coding processed_transcript MGP_CASTEiJ_T0077035.1 MGP_CASTEiJ_G0029650.1 mouse_genomes_project 6 30240966 30346204 - Chchd3 protein_coding processed_transcript MGP_CASTEiJ_T0077036.1 MGP_CASTEiJ_G0029650.1 mouse_genomes_project 6 30240967 30346197 - Chchd3 protein_coding processed_transcript MGP_CASTEiJ_T0077037.1 MGP_CASTEiJ_G0029650.1 mouse_genomes_project 6 30240978 30251705 - Chchd3 protein_coding processed_transcript MGP_CASTEiJ_T0077038.1 MGP_CASTEiJ_G0029650.1 mouse_genomes_project 6 30241018 30267291 - Chchd3 protein_coding processed_transcript MGP_CASTEiJ_T0077039.1 MGP_CASTEiJ_G0029650.1 mouse_genomes_project 6 30251700 30510441 - MGP_CASTEiJ_P0077039 Chchd3 protein_coding protein_coding MGP_CASTEiJ_T0077040.1 MGP_CASTEiJ_G0029650.1 mouse_genomes_project 6 30298707 30510421 - MGP_CASTEiJ_P0077040 Chchd3 protein_coding protein_coding MGP_CASTEiJ_T0008416.1 MGP_CASTEiJ_G0006818.1 mouse_genomes_project 6 71024411 71031419 + Gm44172 lincRNA lincRNA MGP_CASTEiJ_T0102418.1 MGP_CASTEiJ_G0039143.1 mouse_genomes_project 6 125950605 125958045 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0004939.1 MGP_CASTEiJ_G0004224.1 mouse_genomes_project 6 123075326 123077447 - Gm15856 antisense antisense MGP_CASTEiJ_T0001909.1 MGP_CASTEiJ_G0001830.1 mouse_genomes_project 6 44075892 44080160 + TEC TEC MGP_CASTEiJ_T0079550.1 MGP_CASTEiJ_G0030211.1 mouse_genomes_project 6 114956832 114963729 + MGP_CASTEiJ_P0079550 Jagn1 protein_coding protein_coding MGP_CASTEiJ_T0079551.1 MGP_CASTEiJ_G0030211.1 mouse_genomes_project 6 114956858 114959268 + Jagn1 protein_coding retained_intron MGP_CASTEiJ_T0079552.1 MGP_CASTEiJ_G0030211.1 mouse_genomes_project 6 114956873 114963709 + MGP_CASTEiJ_P0079552 Jagn1 protein_coding protein_coding MGP_CASTEiJ_T0078942.1 MGP_CASTEiJ_G0030096.1 mouse_genomes_project 6 88732334 88733330 + MGP_CASTEiJ_P0078942 Dnajb8 protein_coding protein_coding MGP_CASTEiJ_T0078943.1 MGP_CASTEiJ_G0030096.1 mouse_genomes_project 6 88732951 88764479 + MGP_CASTEiJ_P0078943 Dnajb8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080594.1 MGP_CASTEiJ_G0030411.1 mouse_genomes_project 6 130887635 130940380 - MGP_CASTEiJ_P0080594 Pzp protein_coding protein_coding MGP_CASTEiJ_T0080595.1 MGP_CASTEiJ_G0030411.1 mouse_genomes_project 6 130889317 130891625 - Pzp protein_coding processed_transcript MGP_CASTEiJ_T0080596.1 MGP_CASTEiJ_G0030411.1 mouse_genomes_project 6 130898263 130900145 - Pzp protein_coding retained_intron MGP_CASTEiJ_T0080597.1 MGP_CASTEiJ_G0030411.1 mouse_genomes_project 6 130931227 130940363 - MGP_CASTEiJ_P0080597 Pzp protein_coding protein_coding MGP_CASTEiJ_T0077650.1 MGP_CASTEiJ_G0029810.1 mouse_genomes_project 6 46888841 46896258 - MGP_CASTEiJ_P0077650 Gimap3 protein_coding protein_coding MGP_CASTEiJ_T0077651.1 MGP_CASTEiJ_G0029810.1 mouse_genomes_project 6 46888843 46891348 - MGP_CASTEiJ_P0077651 Gimap3 protein_coding protein_coding MGP_CASTEiJ_T0014825.1 MGP_CASTEiJ_G0012988.1 mouse_genomes_project 6 56496978 56497348 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080563.1 MGP_CASTEiJ_G0030405.1 mouse_genomes_project 6 130749762 130755791 + Foxm1 protein_coding processed_transcript MGP_CASTEiJ_T0080564.1 MGP_CASTEiJ_G0030405.1 mouse_genomes_project 6 130749762 130762913 + MGP_CASTEiJ_P0080564 Foxm1 protein_coding protein_coding MGP_CASTEiJ_T0080565.1 MGP_CASTEiJ_G0030405.1 mouse_genomes_project 6 130752503 130760733 + MGP_CASTEiJ_P0080565 Foxm1 protein_coding protein_coding MGP_CASTEiJ_T0080566.1 MGP_CASTEiJ_G0030405.1 mouse_genomes_project 6 130752965 130760125 + MGP_CASTEiJ_P0080566 Foxm1 protein_coding protein_coding MGP_CASTEiJ_T0080567.1 MGP_CASTEiJ_G0030405.1 mouse_genomes_project 6 130754115 130759638 + MGP_CASTEiJ_P0080567 Foxm1 protein_coding protein_coding MGP_CASTEiJ_T0080568.1 MGP_CASTEiJ_G0030405.1 mouse_genomes_project 6 130754193 130758937 + Foxm1 protein_coding retained_intron MGP_CASTEiJ_T0080569.1 MGP_CASTEiJ_G0030405.1 mouse_genomes_project 6 130756268 130758137 + Foxm1 protein_coding retained_intron MGP_CASTEiJ_T0080570.1 MGP_CASTEiJ_G0030405.1 mouse_genomes_project 6 130757725 130759949 + Foxm1 protein_coding retained_intron MGP_CASTEiJ_T0014982.1 MGP_CASTEiJ_G0013145.1 mouse_genomes_project 6 110890422 110890675 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076513.1 MGP_CASTEiJ_G0029556.1 mouse_genomes_project 6 9969032 10040543 - MGP_CASTEiJ_P0076513 protein_coding protein_coding MGP_CASTEiJ_T0076514.1 MGP_CASTEiJ_G0029556.1 mouse_genomes_project 6 9989546 9993091 - protein_coding retained_intron MGP_CASTEiJ_T0076515.1 MGP_CASTEiJ_G0029556.1 mouse_genomes_project 6 10003568 10040543 - MGP_CASTEiJ_P0076515 protein_coding protein_coding MGP_CASTEiJ_T0076516.1 MGP_CASTEiJ_G0029556.1 mouse_genomes_project 6 10016945 10025779 - protein_coding retained_intron MGP_CASTEiJ_T0080187.1 MGP_CASTEiJ_G0030331.1 mouse_genomes_project 6 125189113 125197155 - MGP_CASTEiJ_P0080187 Clec4e protein_coding protein_coding MGP_CASTEiJ_T0080188.1 MGP_CASTEiJ_G0030331.1 mouse_genomes_project 6 125189273 125197154 - Clec4e protein_coding retained_intron MGP_CASTEiJ_T0080189.1 MGP_CASTEiJ_G0030331.1 mouse_genomes_project 6 125189469 125197155 - Clec4e protein_coding retained_intron MGP_CASTEiJ_T0080190.1 MGP_CASTEiJ_G0030331.1 mouse_genomes_project 6 125189992 125197155 - Clec4e protein_coding retained_intron MGP_CASTEiJ_T0080191.1 MGP_CASTEiJ_G0030331.1 mouse_genomes_project 6 125190820 125197155 - MGP_CASTEiJ_P0080191 Clec4e protein_coding protein_coding MGP_CASTEiJ_T0080192.1 MGP_CASTEiJ_G0030331.1 mouse_genomes_project 6 125191023 125197151 - MGP_CASTEiJ_P0080192 Clec4e protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080193.1 MGP_CASTEiJ_G0030331.1 mouse_genomes_project 6 125195090 125197155 - Clec4e protein_coding processed_transcript MGP_CASTEiJ_T0008455.1 MGP_CASTEiJ_G0006846.1 mouse_genomes_project 6 91075053 91076806 - Gm44117 lincRNA lincRNA MGP_CASTEiJ_T0101207.1 MGP_CASTEiJ_G0038120.1 mouse_genomes_project 6 125970639 125970746 + Gm22763 snoRNA snoRNA MGP_CASTEiJ_T0010460.1 MGP_CASTEiJ_G0008648.1 mouse_genomes_project 6 28457111 28457182 - Mir29b-1 miRNA miRNA MGP_CASTEiJ_T0102427.1 MGP_CASTEiJ_G0039152.1 mouse_genomes_project 6 132814726 132832914 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0001908.1 MGP_CASTEiJ_G0001829.1 mouse_genomes_project 6 44071243 44073782 + TEC TEC MGP_CASTEiJ_T0008518.1 MGP_CASTEiJ_G0006901.1 mouse_genomes_project 6 131690410 131722339 - 2310001H17Rik lincRNA lincRNA MGP_CASTEiJ_T0008519.1 MGP_CASTEiJ_G0006901.1 mouse_genomes_project 6 131695835 131718532 - 2310001H17Rik lincRNA lincRNA MGP_CASTEiJ_T0008520.1 MGP_CASTEiJ_G0006901.1 mouse_genomes_project 6 131699467 131722382 - 2310001H17Rik lincRNA lincRNA MGP_CASTEiJ_T0008521.1 MGP_CASTEiJ_G0006901.1 mouse_genomes_project 6 131715376 131723116 - 2310001H17Rik lincRNA lincRNA MGP_CASTEiJ_T0008522.1 MGP_CASTEiJ_G0006901.1 mouse_genomes_project 6 131715436 131722873 - 2310001H17Rik lincRNA lincRNA MGP_CASTEiJ_T0008523.1 MGP_CASTEiJ_G0006901.1 mouse_genomes_project 6 131715541 131718541 - 2310001H17Rik lincRNA lincRNA MGP_CASTEiJ_T0015066.1 MGP_CASTEiJ_G0013229.1 mouse_genomes_project 6 135205485 135205756 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015081.1 MGP_CASTEiJ_G0013244.1 mouse_genomes_project 6 142764758 142765130 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015084.1 MGP_CASTEiJ_G0013247.1 mouse_genomes_project 6 142802977 142803482 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080789.1 MGP_CASTEiJ_G0030485.1 mouse_genomes_project 6 137374501 137387733 + MGP_CASTEiJ_P0080789 Ddx47 protein_coding protein_coding MGP_CASTEiJ_T0080790.1 MGP_CASTEiJ_G0030485.1 mouse_genomes_project 6 137374511 137381384 + MGP_CASTEiJ_P0080790 Ddx47 protein_coding protein_coding MGP_CASTEiJ_T0080791.1 MGP_CASTEiJ_G0030485.1 mouse_genomes_project 6 137374513 137381348 + MGP_CASTEiJ_P0080791 Ddx47 protein_coding protein_coding MGP_CASTEiJ_T0080792.1 MGP_CASTEiJ_G0030485.1 mouse_genomes_project 6 137374515 137378979 + Ddx47 protein_coding retained_intron MGP_CASTEiJ_T0080793.1 MGP_CASTEiJ_G0030485.1 mouse_genomes_project 6 137374521 137387729 + Ddx47 protein_coding retained_intron MGP_CASTEiJ_T0080794.1 MGP_CASTEiJ_G0030485.1 mouse_genomes_project 6 137374522 137380463 + MGP_CASTEiJ_P0080794 Ddx47 protein_coding protein_coding MGP_CASTEiJ_T0080795.1 MGP_CASTEiJ_G0030485.1 mouse_genomes_project 6 137374524 137377977 + Ddx47 protein_coding retained_intron MGP_CASTEiJ_T0080796.1 MGP_CASTEiJ_G0030485.1 mouse_genomes_project 6 137374533 137385704 + MGP_CASTEiJ_P0080796 Ddx47 protein_coding protein_coding MGP_CASTEiJ_T0080797.1 MGP_CASTEiJ_G0030485.1 mouse_genomes_project 6 137374542 137385727 + MGP_CASTEiJ_P0080797 Ddx47 protein_coding protein_coding MGP_CASTEiJ_T0080798.1 MGP_CASTEiJ_G0030485.1 mouse_genomes_project 6 137377701 137381413 + Ddx47 protein_coding processed_transcript MGP_CASTEiJ_T0080799.1 MGP_CASTEiJ_G0030485.1 mouse_genomes_project 6 137378172 137380881 + Ddx47 protein_coding retained_intron MGP_CASTEiJ_T0080800.1 MGP_CASTEiJ_G0030485.1 mouse_genomes_project 6 137381346 137387729 + MGP_CASTEiJ_P0080800 Ddx47 protein_coding protein_coding MGP_CASTEiJ_T0004977.1 MGP_CASTEiJ_G0004257.1 mouse_genomes_project 6 146082619 146104144 - 1700126G02Rik antisense antisense MGP_CASTEiJ_T0079926.1 MGP_CASTEiJ_G0030280.1 mouse_genomes_project 6 121059087 121134353 - MGP_CASTEiJ_P0079926 Adipor2 protein_coding protein_coding MGP_CASTEiJ_T0079927.1 MGP_CASTEiJ_G0030280.1 mouse_genomes_project 6 121059704 121099072 - MGP_CASTEiJ_P0079927 Adipor2 protein_coding protein_coding MGP_CASTEiJ_T0079928.1 MGP_CASTEiJ_G0030280.1 mouse_genomes_project 6 121061402 121100633 - MGP_CASTEiJ_P0079928 Adipor2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079929.1 MGP_CASTEiJ_G0030280.1 mouse_genomes_project 6 121063625 121134339 - Adipor2 protein_coding retained_intron MGP_CASTEiJ_T0079930.1 MGP_CASTEiJ_G0030280.1 mouse_genomes_project 6 121079429 121134130 - MGP_CASTEiJ_P0079930 Adipor2 protein_coding protein_coding MGP_CASTEiJ_T0080216.1 MGP_CASTEiJ_G0030339.1 mouse_genomes_project 6 126596775 126613023 + MGP_CASTEiJ_P0080216 C1rl protein_coding protein_coding MGP_CASTEiJ_T0002004.1 MGP_CASTEiJ_G0001925.1 mouse_genomes_project 6 89341758 89345719 + TEC TEC MGP_CASTEiJ_T0015051.1 MGP_CASTEiJ_G0013214.1 mouse_genomes_project 6 131353565 131353716 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078828.1 MGP_CASTEiJ_G0030072.1 mouse_genomes_project 6 87285974 87446492 + MGP_CASTEiJ_P0078828 Aak1 protein_coding protein_coding MGP_CASTEiJ_T0078829.1 MGP_CASTEiJ_G0030072.1 mouse_genomes_project 6 87285989 87374031 + MGP_CASTEiJ_P0078829 Aak1 protein_coding protein_coding MGP_CASTEiJ_T0078830.1 MGP_CASTEiJ_G0030072.1 mouse_genomes_project 6 87286085 87390493 + Aak1 protein_coding retained_intron MGP_CASTEiJ_T0078831.1 MGP_CASTEiJ_G0030072.1 mouse_genomes_project 6 87286510 87435113 + MGP_CASTEiJ_P0078831 Aak1 protein_coding protein_coding MGP_CASTEiJ_T0078832.1 MGP_CASTEiJ_G0030072.1 mouse_genomes_project 6 87287642 87374026 + Aak1 protein_coding processed_transcript MGP_CASTEiJ_T0078833.1 MGP_CASTEiJ_G0030072.1 mouse_genomes_project 6 87398853 87439130 + MGP_CASTEiJ_P0078833 Aak1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078834.1 MGP_CASTEiJ_G0030072.1 mouse_genomes_project 6 87410553 87439453 + Aak1 protein_coding processed_transcript MGP_CASTEiJ_T0078835.1 MGP_CASTEiJ_G0030072.1 mouse_genomes_project 6 87428508 87431277 + Aak1 protein_coding retained_intron MGP_CASTEiJ_T0078836.1 MGP_CASTEiJ_G0030072.1 mouse_genomes_project 6 87438244 87439909 + Aak1 protein_coding processed_transcript MGP_CASTEiJ_T0079722.1 MGP_CASTEiJ_G0030243.1 mouse_genomes_project 6 117341025 117365794 - MGP_CASTEiJ_P0079722 Efcab12 protein_coding protein_coding MGP_CASTEiJ_T0079723.1 MGP_CASTEiJ_G0030243.1 mouse_genomes_project 6 117341192 117365794 - MGP_CASTEiJ_P0079723 Efcab12 protein_coding protein_coding MGP_CASTEiJ_T0079724.1 MGP_CASTEiJ_G0030243.1 mouse_genomes_project 6 117341192 117365794 - MGP_CASTEiJ_P0079724 Efcab12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077740.1 MGP_CASTEiJ_G0029829.1 mouse_genomes_project 6 48873562 48877331 - MGP_CASTEiJ_P0077740 Npvf protein_coding protein_coding MGP_CASTEiJ_T0076929.1 MGP_CASTEiJ_G0029632.1 mouse_genomes_project 6 27576894 27678010 - MGP_CASTEiJ_P0076929 Ube2h protein_coding unknown_likely_coding MGP_CASTEiJ_T0076930.1 MGP_CASTEiJ_G0029632.1 mouse_genomes_project 6 27584287 27677960 - Ube2h protein_coding processed_transcript MGP_CASTEiJ_T0008497.1 MGP_CASTEiJ_G0006880.1 mouse_genomes_project 6 119499098 119499420 + Gm29509 lincRNA lincRNA MGP_CASTEiJ_T0002114.1 MGP_CASTEiJ_G0002034.1 mouse_genomes_project 6 150606836 150608350 - TEC TEC MGP_CASTEiJ_T0080545.1 MGP_CASTEiJ_G0030402.1 mouse_genomes_project 6 130583327 130742611 - MGP_CASTEiJ_P0080545 Tulp3 protein_coding protein_coding MGP_CASTEiJ_T0080546.1 MGP_CASTEiJ_G0030402.1 mouse_genomes_project 6 130585114 130587633 - Tulp3 protein_coding processed_transcript MGP_CASTEiJ_T0080550.1 MGP_CASTEiJ_G0030402.1 mouse_genomes_project 6 130605447 130742538 - MGP_CASTEiJ_P0080550 Tulp3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0080553.1 MGP_CASTEiJ_G0030402.1 mouse_genomes_project 6 130711374 130742601 - Tulp3 protein_coding retained_intron MGP_CASTEiJ_T0080554.1 MGP_CASTEiJ_G0030402.1 mouse_genomes_project 6 130713775 130742575 - MGP_CASTEiJ_P0080554 Tulp3 protein_coding protein_coding MGP_CASTEiJ_T0080555.1 MGP_CASTEiJ_G0030402.1 mouse_genomes_project 6 130725133 130728553 - Tulp3 protein_coding retained_intron MGP_CASTEiJ_T0080556.1 MGP_CASTEiJ_G0030402.1 mouse_genomes_project 6 130725812 130742585 - MGP_CASTEiJ_P0080556 Tulp3 protein_coding protein_coding MGP_CASTEiJ_T0008405.1 MGP_CASTEiJ_G0006808.1 mouse_genomes_project 6 60186084 60190552 - Gm43893 lincRNA lincRNA MGP_CASTEiJ_T0000147.1 MGP_CASTEiJ_G0000113.1 mouse_genomes_project 6 67197800 67198266 + MGP_CASTEiJ_P0000147 Igkv14-130 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000148.1 MGP_CASTEiJ_G0000113.1 mouse_genomes_project 6 67197800 67198266 + MGP_CASTEiJ_P0000148 Igkv14-130 IG_V_gene IG_V_gene MGP_CASTEiJ_T0077744.1 MGP_CASTEiJ_G0029831.1 mouse_genomes_project 6 49753485 49762445 - MGP_CASTEiJ_P0077744 Hnrnpa2b1 protein_coding protein_coding MGP_CASTEiJ_T0077745.1 MGP_CASTEiJ_G0029831.1 mouse_genomes_project 6 49753674 49762398 - MGP_CASTEiJ_P0077745 Hnrnpa2b1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077746.1 MGP_CASTEiJ_G0029831.1 mouse_genomes_project 6 49753677 49762396 - MGP_CASTEiJ_P0077746 Hnrnpa2b1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077747.1 MGP_CASTEiJ_G0029831.1 mouse_genomes_project 6 49753677 49762396 - MGP_CASTEiJ_P0077747 Hnrnpa2b1 protein_coding protein_coding MGP_CASTEiJ_T0077748.1 MGP_CASTEiJ_G0029831.1 mouse_genomes_project 6 49753698 49755736 - Hnrnpa2b1 protein_coding retained_intron MGP_CASTEiJ_T0077749.1 MGP_CASTEiJ_G0029831.1 mouse_genomes_project 6 49755312 49762377 - MGP_CASTEiJ_P0077749 Hnrnpa2b1 protein_coding protein_coding MGP_CASTEiJ_T0077750.1 MGP_CASTEiJ_G0029831.1 mouse_genomes_project 6 49755312 49762323 - MGP_CASTEiJ_P0077750 Hnrnpa2b1 protein_coding protein_coding MGP_CASTEiJ_T0077751.1 MGP_CASTEiJ_G0029831.1 mouse_genomes_project 6 49755312 49762323 - MGP_CASTEiJ_P0077751 Hnrnpa2b1 protein_coding protein_coding MGP_CASTEiJ_T0077752.1 MGP_CASTEiJ_G0029831.1 mouse_genomes_project 6 49755352 49756716 - Hnrnpa2b1 protein_coding retained_intron MGP_CASTEiJ_T0077753.1 MGP_CASTEiJ_G0029831.1 mouse_genomes_project 6 49756023 49759259 - MGP_CASTEiJ_P0077753 Hnrnpa2b1 protein_coding protein_coding MGP_CASTEiJ_T0077754.1 MGP_CASTEiJ_G0029831.1 mouse_genomes_project 6 49756809 49762289 - MGP_CASTEiJ_P0077754 Hnrnpa2b1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077755.1 MGP_CASTEiJ_G0029831.1 mouse_genomes_project 6 49757187 49758795 - Hnrnpa2b1 protein_coding retained_intron MGP_CASTEiJ_T0077756.1 MGP_CASTEiJ_G0029831.1 mouse_genomes_project 6 49757557 49759225 - Hnrnpa2b1 protein_coding retained_intron MGP_CASTEiJ_T0077757.1 MGP_CASTEiJ_G0029831.1 mouse_genomes_project 6 49758375 49762435 - Hnrnpa2b1 protein_coding retained_intron MGP_CASTEiJ_T0001870.1 MGP_CASTEiJ_G0001791.1 mouse_genomes_project 6 25448348 25455375 - TEC TEC MGP_CASTEiJ_T0010452.1 MGP_CASTEiJ_G0008640.1 mouse_genomes_project 6 26282075 26282148 + Mir129-1 miRNA miRNA MGP_CASTEiJ_T0098999.1 MGP_CASTEiJ_G0035919.1 mouse_genomes_project 6 130734215 130735648 - Gm44190 sense_intronic sense_intronic MGP_CASTEiJ_T0076789.1 MGP_CASTEiJ_G0029611.1 mouse_genomes_project 6 26320801 26335949 + MGP_CASTEiJ_P0076789 Lep protein_coding protein_coding MGP_CASTEiJ_T0076790.1 MGP_CASTEiJ_G0029611.1 mouse_genomes_project 6 26327540 26333055 + MGP_CASTEiJ_P0076790 Lep protein_coding protein_coding MGP_CASTEiJ_T0015075.1 MGP_CASTEiJ_G0013238.1 mouse_genomes_project 6 137612780 137613154 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004969.1 MGP_CASTEiJ_G0004251.1 mouse_genomes_project 6 138625942 138632138 + antisense antisense MGP_CASTEiJ_T0010461.1 MGP_CASTEiJ_G0008649.1 mouse_genomes_project 6 33074176 33074260 - Gm23053 miRNA miRNA MGP_CASTEiJ_T0002058.1 MGP_CASTEiJ_G0001979.1 mouse_genomes_project 6 118212675 118215363 + TEC TEC MGP_CASTEiJ_T0078540.1 MGP_CASTEiJ_G0030018.1 mouse_genomes_project 6 83508911 83519810 + MGP_CASTEiJ_P0078540 Bola3 protein_coding protein_coding MGP_CASTEiJ_T0078541.1 MGP_CASTEiJ_G0030018.1 mouse_genomes_project 6 83508980 83519785 + MGP_CASTEiJ_P0078541 Bola3 protein_coding protein_coding MGP_CASTEiJ_T0078542.1 MGP_CASTEiJ_G0030018.1 mouse_genomes_project 6 83509210 83521552 + MGP_CASTEiJ_P0078542 Bola3 protein_coding protein_coding MGP_CASTEiJ_T0078543.1 MGP_CASTEiJ_G0030018.1 mouse_genomes_project 6 83509255 83510165 + Bola3 protein_coding processed_transcript MGP_CASTEiJ_T0078544.1 MGP_CASTEiJ_G0030018.1 mouse_genomes_project 6 83509284 83512957 + Bola3 protein_coding retained_intron MGP_CASTEiJ_T0078545.1 MGP_CASTEiJ_G0030018.1 mouse_genomes_project 6 83510804 83512968 + Bola3 protein_coding retained_intron MGP_CASTEiJ_T0078546.1 MGP_CASTEiJ_G0030018.1 mouse_genomes_project 6 83510804 83519830 + Bola3 protein_coding retained_intron MGP_CASTEiJ_T0078547.1 MGP_CASTEiJ_G0030018.1 mouse_genomes_project 6 83511859 83519747 + Bola3 protein_coding processed_transcript MGP_CASTEiJ_T0078548.1 MGP_CASTEiJ_G0030018.1 mouse_genomes_project 6 83513072 83520665 + Bola3 protein_coding processed_transcript MGP_CASTEiJ_T0102414.1 MGP_CASTEiJ_G0039139.1 mouse_genomes_project 6 90511758 90512544 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0077359.1 MGP_CASTEiJ_G0029718.1 mouse_genomes_project 6 38828650 38832158 - MGP_CASTEiJ_P0077359 Gm4744 protein_coding protein_coding MGP_CASTEiJ_T0011310.1 MGP_CASTEiJ_G0009498.1 mouse_genomes_project 6 50522798 50523012 + Gm27861 misc_RNA misc_RNA MGP_CASTEiJ_T0014705.1 MGP_CASTEiJ_G0012868.1 mouse_genomes_project 6 1298386 1301360 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014703.1 MGP_CASTEiJ_G0012866.1 mouse_genomes_project 6 1079813 1080420 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017527.1 MGP_CASTEiJ_G0014951.1 mouse_genomes_project 6 56148521 56183507 + processed_transcript processed_transcript MGP_CASTEiJ_T0101196.1 MGP_CASTEiJ_G0038109.1 mouse_genomes_project 6 101548466 101548600 - Gm23234 snoRNA snoRNA MGP_CASTEiJ_T0078928.1 MGP_CASTEiJ_G0030092.1 mouse_genomes_project 6 88461120 88462336 - MGP_CASTEiJ_P0078928 H1fx protein_coding protein_coding MGP_CASTEiJ_T0101214.1 MGP_CASTEiJ_G0038127.1 mouse_genomes_project 6 127404875 127405004 - Gm24175 snoRNA snoRNA MGP_CASTEiJ_T0008531.1 MGP_CASTEiJ_G0006906.1 mouse_genomes_project 6 138086793 138112551 + 4930425L21Rik lincRNA lincRNA MGP_CASTEiJ_T0008532.1 MGP_CASTEiJ_G0006906.1 mouse_genomes_project 6 138108153 138113688 + 4930425L21Rik lincRNA lincRNA MGP_CASTEiJ_T0008508.1 MGP_CASTEiJ_G0006891.1 mouse_genomes_project 6 128486500 128530796 - Gm10415 lincRNA lincRNA MGP_CASTEiJ_T0000275.1 MGP_CASTEiJ_G0000224.1 mouse_genomes_project 6 68070508 68070795 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0017533.1 MGP_CASTEiJ_G0014954.1 mouse_genomes_project 6 66272311 66273116 - 4930597O21Rik processed_transcript retained_intron MGP_CASTEiJ_T0017534.1 MGP_CASTEiJ_G0014954.1 mouse_genomes_project 6 66272313 66274125 - 4930597O21Rik processed_transcript bidirectional_promoter_lncRNA MGP_CASTEiJ_T0078362.1 MGP_CASTEiJ_G0029979.1 mouse_genomes_project 6 77138107 77153022 + MGP_CASTEiJ_P0078362 Lrrtm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078363.1 MGP_CASTEiJ_G0029979.1 mouse_genomes_project 6 77138115 77140935 + MGP_CASTEiJ_P0078363 Lrrtm1 protein_coding protein_coding MGP_CASTEiJ_T0078364.1 MGP_CASTEiJ_G0029979.1 mouse_genomes_project 6 77138136 77140929 + MGP_CASTEiJ_P0078364 Lrrtm1 protein_coding protein_coding MGP_CASTEiJ_T0078365.1 MGP_CASTEiJ_G0029979.1 mouse_genomes_project 6 77138340 77139530 + MGP_CASTEiJ_P0078365 Lrrtm1 protein_coding protein_coding MGP_CASTEiJ_T0002085.1 MGP_CASTEiJ_G0002005.1 mouse_genomes_project 6 135551482 135553306 + TEC TEC MGP_CASTEiJ_T0080739.1 MGP_CASTEiJ_G0030474.1 mouse_genomes_project 6 136111992 136115856 - MGP_CASTEiJ_P0080739 Kap protein_coding protein_coding MGP_CASTEiJ_T0080740.1 MGP_CASTEiJ_G0030474.1 mouse_genomes_project 6 136112095 136115767 - MGP_CASTEiJ_P0080740 Kap protein_coding protein_coding MGP_CASTEiJ_T0008340.1 MGP_CASTEiJ_G0006762.1 mouse_genomes_project 6 29136513 29141112 - Gm43293 lincRNA lincRNA MGP_CASTEiJ_T0098629.1 MGP_CASTEiJ_G0035560.1 mouse_genomes_project 6 59151724 59151843 + n-R5s162 rRNA rRNA MGP_CASTEiJ_T0077972.1 MGP_CASTEiJ_G0029882.1 mouse_genomes_project 6 55541708 55542775 + MGP_CASTEiJ_P0077972 protein_coding protein_coding MGP_CASTEiJ_T0004910.1 MGP_CASTEiJ_G0004203.1 mouse_genomes_project 6 102319923 102331631 + Gm26911 antisense antisense MGP_CASTEiJ_T0004911.1 MGP_CASTEiJ_G0004203.1 mouse_genomes_project 6 102319940 102341468 + Gm26911 antisense antisense MGP_CASTEiJ_T0004912.1 MGP_CASTEiJ_G0004203.1 mouse_genomes_project 6 102320012 102330241 + Gm26911 antisense antisense MGP_CASTEiJ_T0077312.1 MGP_CASTEiJ_G0029702.1 mouse_genomes_project 6 37723378 38121999 + MGP_CASTEiJ_P0077312 Tmem178b protein_coding protein_coding MGP_CASTEiJ_T0077313.1 MGP_CASTEiJ_G0029702.1 mouse_genomes_project 6 37971542 38115314 + MGP_CASTEiJ_P0077313 Tmem178b protein_coding protein_coding MGP_CASTEiJ_T0077314.1 MGP_CASTEiJ_G0029702.1 mouse_genomes_project 6 38115777 38122074 + Tmem178b protein_coding retained_intron MGP_CASTEiJ_T0101153.1 MGP_CASTEiJ_G0038066.1 mouse_genomes_project 6 5322841 5322962 - Gm26075 snoRNA snoRNA MGP_CASTEiJ_T0078600.1 MGP_CASTEiJ_G0030030.1 mouse_genomes_project 6 83999073 84025190 - MGP_CASTEiJ_P0078600 Paip2b protein_coding protein_coding MGP_CASTEiJ_T0078601.1 MGP_CASTEiJ_G0030030.1 mouse_genomes_project 6 84002327 84003865 - Paip2b protein_coding retained_intron MGP_CASTEiJ_T0078602.1 MGP_CASTEiJ_G0030030.1 mouse_genomes_project 6 84003378 84025162 - Paip2b protein_coding retained_intron MGP_CASTEiJ_T0078603.1 MGP_CASTEiJ_G0030030.1 mouse_genomes_project 6 84006526 84025162 - Paip2b protein_coding retained_intron MGP_CASTEiJ_T0078604.1 MGP_CASTEiJ_G0030030.1 mouse_genomes_project 6 84024905 84025149 - Paip2b protein_coding retained_intron MGP_CASTEiJ_T0004909.1 MGP_CASTEiJ_G0004202.1 mouse_genomes_project 6 102171178 102319368 + Gm43948 antisense antisense MGP_CASTEiJ_T0004906.1 MGP_CASTEiJ_G0004199.1 mouse_genomes_project 6 95989584 95993225 - Kbtbd8os antisense antisense MGP_CASTEiJ_T0008512.1 MGP_CASTEiJ_G0006895.1 mouse_genomes_project 6 129938585 129953619 + Gm43634 lincRNA lincRNA MGP_CASTEiJ_T0014992.1 MGP_CASTEiJ_G0013155.1 mouse_genomes_project 6 115626187 115626239 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101799.1 MGP_CASTEiJ_G0038569.1 mouse_genomes_project 6 62255267 62258247 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101800.1 MGP_CASTEiJ_G0038569.1 mouse_genomes_project 6 62255617 62257024 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0079527.1 MGP_CASTEiJ_G0030207.1 mouse_genomes_project 6 114885008 114900592 + MGP_CASTEiJ_P0079527 Arpc4 protein_coding protein_coding MGP_CASTEiJ_T0079528.1 MGP_CASTEiJ_G0030207.1 mouse_genomes_project 6 114885101 114898918 + MGP_CASTEiJ_P0079528 Arpc4 protein_coding protein_coding MGP_CASTEiJ_T0078111.1 MGP_CASTEiJ_G0029926.1 mouse_genomes_project 6 65895605 65897733 + MGP_CASTEiJ_P0078111 Tpm3-rs7 protein_coding protein_coding MGP_CASTEiJ_T0014824.1 MGP_CASTEiJ_G0012987.1 mouse_genomes_project 6 56175365 56175618 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010457.1 MGP_CASTEiJ_G0008645.1 mouse_genomes_project 6 27523669 27523739 - Mir183 miRNA miRNA MGP_CASTEiJ_T0008310.1 MGP_CASTEiJ_G0006743.1 mouse_genomes_project 6 18992481 18997681 - Gm3289 lincRNA lincRNA MGP_CASTEiJ_T0002422.1 MGP_CASTEiJ_G0002337.1 mouse_genomes_project 6 39367141 39367153 + MGP_CASTEiJ_P0002422 Trbd1 TR_D_gene TR_D_gene MGP_CASTEiJ_T0001878.1 MGP_CASTEiJ_G0001799.1 mouse_genomes_project 6 28503696 28505793 - TEC TEC MGP_CASTEiJ_T0077376.1 MGP_CASTEiJ_G0029731.1 mouse_genomes_project 6 39461762 39478209 - MGP_CASTEiJ_P0077376 protein_coding protein_coding MGP_CASTEiJ_T0077377.1 MGP_CASTEiJ_G0029731.1 mouse_genomes_project 6 39461765 39478209 - MGP_CASTEiJ_P0077377 protein_coding protein_coding MGP_CASTEiJ_T0077378.1 MGP_CASTEiJ_G0029731.1 mouse_genomes_project 6 39464608 39478184 - protein_coding retained_intron MGP_CASTEiJ_T0014882.1 MGP_CASTEiJ_G0013045.1 mouse_genomes_project 6 67991005 67992527 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079861.1 MGP_CASTEiJ_G0030269.1 mouse_genomes_project 6 119616935 119710537 + MGP_CASTEiJ_P0079861 Rasgef1a protein_coding protein_coding MGP_CASTEiJ_T0079862.1 MGP_CASTEiJ_G0030269.1 mouse_genomes_project 6 119683844 119709495 + MGP_CASTEiJ_P0079862 Rasgef1a protein_coding protein_coding MGP_CASTEiJ_T0079863.1 MGP_CASTEiJ_G0030269.1 mouse_genomes_project 6 119683844 119709566 + MGP_CASTEiJ_P0079863 Rasgef1a protein_coding protein_coding MGP_CASTEiJ_T0080818.1 MGP_CASTEiJ_G0030492.1 mouse_genomes_project 6 137763847 137784497 + MGP_CASTEiJ_P0080818 Emp1 protein_coding protein_coding MGP_CASTEiJ_T0080819.1 MGP_CASTEiJ_G0030492.1 mouse_genomes_project 6 137764234 137784497 + MGP_CASTEiJ_P0080819 Emp1 protein_coding protein_coding MGP_CASTEiJ_T0080820.1 MGP_CASTEiJ_G0030492.1 mouse_genomes_project 6 137764234 137784497 + MGP_CASTEiJ_P0080820 Emp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080821.1 MGP_CASTEiJ_G0030492.1 mouse_genomes_project 6 137764311 137781701 + Emp1 protein_coding retained_intron MGP_CASTEiJ_T0080822.1 MGP_CASTEiJ_G0030492.1 mouse_genomes_project 6 137764371 137766961 + Emp1 protein_coding retained_intron MGP_CASTEiJ_T0080823.1 MGP_CASTEiJ_G0030492.1 mouse_genomes_project 6 137768805 137784497 + MGP_CASTEiJ_P0080823 Emp1 protein_coding protein_coding MGP_CASTEiJ_T0077837.1 MGP_CASTEiJ_G0029853.1 mouse_genomes_project 6 52255564 52260924 - MGP_CASTEiJ_P0077837 Tril protein_coding protein_coding MGP_CASTEiJ_T0014725.1 MGP_CASTEiJ_G0012888.1 mouse_genomes_project 6 8905328 8905626 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076996.1 MGP_CASTEiJ_G0029643.1 mouse_genomes_project 6 28149695 28293546 - MGP_CASTEiJ_P0076996 Copg2 protein_coding protein_coding MGP_CASTEiJ_T0076997.1 MGP_CASTEiJ_G0029643.1 mouse_genomes_project 6 28151997 28293601 - MGP_CASTEiJ_P0076997 Copg2 protein_coding protein_coding MGP_CASTEiJ_T0076998.1 MGP_CASTEiJ_G0029643.1 mouse_genomes_project 6 28214173 28293517 - Copg2 protein_coding processed_transcript MGP_CASTEiJ_T0076999.1 MGP_CASTEiJ_G0029643.1 mouse_genomes_project 6 28214506 28293571 - Copg2 protein_coding processed_transcript MGP_CASTEiJ_T0077000.1 MGP_CASTEiJ_G0029643.1 mouse_genomes_project 6 28251842 28293537 - Copg2 protein_coding processed_transcript MGP_CASTEiJ_T0077001.1 MGP_CASTEiJ_G0029643.1 mouse_genomes_project 6 28252218 28293192 - Copg2 protein_coding processed_transcript MGP_CASTEiJ_T0077002.1 MGP_CASTEiJ_G0029643.1 mouse_genomes_project 6 28291664 28293203 - Copg2 protein_coding processed_transcript MGP_CASTEiJ_T0077003.1 MGP_CASTEiJ_G0029643.1 mouse_genomes_project 6 28292880 28293555 - Copg2 protein_coding processed_transcript MGP_CASTEiJ_T0015080.1 MGP_CASTEiJ_G0013243.1 mouse_genomes_project 6 141539925 141540529 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076391.1 MGP_CASTEiJ_G0029530.1 mouse_genomes_project 6 2007060 2048246 - MGP_CASTEiJ_P0076391 Pon3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076392.1 MGP_CASTEiJ_G0029530.1 mouse_genomes_project 6 2007060 2048299 - MGP_CASTEiJ_P0076392 Pon3 protein_coding protein_coding MGP_CASTEiJ_T0076393.1 MGP_CASTEiJ_G0029530.1 mouse_genomes_project 6 2021496 2048248 - MGP_CASTEiJ_P0076393 Pon3 protein_coding protein_coding MGP_CASTEiJ_T0076394.1 MGP_CASTEiJ_G0029530.1 mouse_genomes_project 6 2025529 2048227 - Pon3 protein_coding retained_intron MGP_CASTEiJ_T0076395.1 MGP_CASTEiJ_G0029530.1 mouse_genomes_project 6 2025965 2046876 - Pon3 protein_coding retained_intron MGP_CASTEiJ_T0076396.1 MGP_CASTEiJ_G0029530.1 mouse_genomes_project 6 2046589 2047577 - Pon3 protein_coding processed_transcript MGP_CASTEiJ_T0002604.1 MGP_CASTEiJ_G0002499.1 mouse_genomes_project 6 39061021 39061693 + MGP_CASTEiJ_P0002604 Trbv19 TR_V_gene TR_V_gene MGP_CASTEiJ_T0101639.1 MGP_CASTEiJ_G0038487.1 mouse_genomes_project 6 64631926 64633011 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101640.1 MGP_CASTEiJ_G0038487.1 mouse_genomes_project 6 64632046 64632767 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0008330.1 MGP_CASTEiJ_G0006756.1 mouse_genomes_project 6 28773875 28809390 - Mkln1os lincRNA lincRNA MGP_CASTEiJ_T0008332.1 MGP_CASTEiJ_G0006756.1 mouse_genomes_project 6 28792772 28809370 - Mkln1os lincRNA lincRNA MGP_CASTEiJ_T0008333.1 MGP_CASTEiJ_G0006756.1 mouse_genomes_project 6 28794429 28809376 - Mkln1os lincRNA lincRNA MGP_CASTEiJ_T0008368.1 MGP_CASTEiJ_G0006779.1 mouse_genomes_project 6 46196063 46210128 - lincRNA lincRNA MGP_CASTEiJ_T0101178.1 MGP_CASTEiJ_G0038091.1 mouse_genomes_project 6 67199198 67199331 - snoRNA snoRNA MGP_CASTEiJ_T0077519.1 MGP_CASTEiJ_G0029781.1 mouse_genomes_project 6 45698405 45707903 - MGP_CASTEiJ_P0077519 Ezh2 protein_coding protein_coding MGP_CASTEiJ_T0077520.1 MGP_CASTEiJ_G0029781.1 mouse_genomes_project 6 45698405 45762017 - MGP_CASTEiJ_P0077520 Ezh2 protein_coding protein_coding MGP_CASTEiJ_T0077521.1 MGP_CASTEiJ_G0029781.1 mouse_genomes_project 6 45698405 45762017 - MGP_CASTEiJ_P0077521 Ezh2 protein_coding protein_coding MGP_CASTEiJ_T0077522.1 MGP_CASTEiJ_G0029781.1 mouse_genomes_project 6 45698405 45762017 - MGP_CASTEiJ_P0077522 Ezh2 protein_coding protein_coding MGP_CASTEiJ_T0077523.1 MGP_CASTEiJ_G0029781.1 mouse_genomes_project 6 45698585 45700371 - Ezh2 protein_coding retained_intron MGP_CASTEiJ_T0077524.1 MGP_CASTEiJ_G0029781.1 mouse_genomes_project 6 45698807 45744892 - MGP_CASTEiJ_P0077524 Ezh2 protein_coding protein_coding MGP_CASTEiJ_T0077525.1 MGP_CASTEiJ_G0029781.1 mouse_genomes_project 6 45700264 45703370 - Ezh2 protein_coding retained_intron MGP_CASTEiJ_T0077526.1 MGP_CASTEiJ_G0029781.1 mouse_genomes_project 6 45700879 45707877 - Ezh2 protein_coding retained_intron MGP_CASTEiJ_T0077527.1 MGP_CASTEiJ_G0029781.1 mouse_genomes_project 6 45701990 45713043 - Ezh2 protein_coding retained_intron MGP_CASTEiJ_T0077528.1 MGP_CASTEiJ_G0029781.1 mouse_genomes_project 6 45708010 45718905 - MGP_CASTEiJ_P0077528 Ezh2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077529.1 MGP_CASTEiJ_G0029781.1 mouse_genomes_project 6 45711163 45718905 - MGP_CASTEiJ_P0077529 Ezh2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077530.1 MGP_CASTEiJ_G0029781.1 mouse_genomes_project 6 45712942 45721368 - MGP_CASTEiJ_P0077530 Ezh2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077531.1 MGP_CASTEiJ_G0029781.1 mouse_genomes_project 6 45712995 45762045 - MGP_CASTEiJ_P0077531 Ezh2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077532.1 MGP_CASTEiJ_G0029781.1 mouse_genomes_project 6 45719538 45762328 - MGP_CASTEiJ_P0077532 Ezh2 protein_coding protein_coding MGP_CASTEiJ_T0077533.1 MGP_CASTEiJ_G0029781.1 mouse_genomes_project 6 45723185 45745241 - Ezh2 protein_coding processed_transcript MGP_CASTEiJ_T0001896.1 MGP_CASTEiJ_G0001817.1 mouse_genomes_project 6 43154757 43158555 + TEC TEC MGP_CASTEiJ_T0077176.1 MGP_CASTEiJ_G0029676.1 mouse_genomes_project 6 35537412 35608318 + Trim24 protein_coding retained_intron MGP_CASTEiJ_T0077177.1 MGP_CASTEiJ_G0029676.1 mouse_genomes_project 6 35537412 35647163 + Trim24 protein_coding retained_intron MGP_CASTEiJ_T0077178.1 MGP_CASTEiJ_G0029676.1 mouse_genomes_project 6 35537412 35669607 + MGP_CASTEiJ_P0077178 Trim24 protein_coding protein_coding MGP_CASTEiJ_T0077179.1 MGP_CASTEiJ_G0029676.1 mouse_genomes_project 6 35537412 35669607 + MGP_CASTEiJ_P0077179 Trim24 protein_coding protein_coding MGP_CASTEiJ_T0077180.1 MGP_CASTEiJ_G0029676.1 mouse_genomes_project 6 35542895 35619478 + Trim24 protein_coding processed_transcript MGP_CASTEiJ_T0077181.1 MGP_CASTEiJ_G0029676.1 mouse_genomes_project 6 35584507 35669244 + MGP_CASTEiJ_P0077181 Trim24 protein_coding protein_coding MGP_CASTEiJ_T0077182.1 MGP_CASTEiJ_G0029676.1 mouse_genomes_project 6 35599199 35614573 + Trim24 protein_coding retained_intron MGP_CASTEiJ_T0077183.1 MGP_CASTEiJ_G0029676.1 mouse_genomes_project 6 35648919 35653964 + Trim24 protein_coding retained_intron MGP_CASTEiJ_T0004965.1 MGP_CASTEiJ_G0004247.1 mouse_genomes_project 6 137247010 137250102 + 2810454H06Rik antisense antisense MGP_CASTEiJ_T0078871.1 MGP_CASTEiJ_G0030082.1 mouse_genomes_project 6 88049985 88062276 - MGP_CASTEiJ_P0078871 Prokr1 protein_coding protein_coding MGP_CASTEiJ_T0078872.1 MGP_CASTEiJ_G0030082.1 mouse_genomes_project 6 88049986 88062253 - MGP_CASTEiJ_P0078872 Prokr1 protein_coding protein_coding MGP_CASTEiJ_T0078873.1 MGP_CASTEiJ_G0030082.1 mouse_genomes_project 6 88059947 88062252 - MGP_CASTEiJ_P0078873 Prokr1 protein_coding protein_coding MGP_CASTEiJ_T0004838.1 MGP_CASTEiJ_G0004160.1 mouse_genomes_project 6 71113068 71113991 - 1700040L08Rik antisense antisense MGP_CASTEiJ_T0099942.1 MGP_CASTEiJ_G0036855.1 mouse_genomes_project 6 26795031 26795137 - Gm26484 snRNA snRNA MGP_CASTEiJ_T0081245.1 MGP_CASTEiJ_G0030568.1 mouse_genomes_project 6 150070484 150072147 + MGP_CASTEiJ_P0081245 Rep15 protein_coding protein_coding MGP_CASTEiJ_T0011338.1 MGP_CASTEiJ_G0009526.1 mouse_genomes_project 6 130158369 130158668 + Gm23098 misc_RNA misc_RNA MGP_CASTEiJ_T0014852.1 MGP_CASTEiJ_G0013015.1 mouse_genomes_project 6 64551002 64551348 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014757.1 MGP_CASTEiJ_G0012920.1 mouse_genomes_project 6 27082761 27083130 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002007.1 MGP_CASTEiJ_G0001928.1 mouse_genomes_project 6 90909495 90912635 + TEC TEC MGP_CASTEiJ_T0002059.1 MGP_CASTEiJ_G0001980.1 mouse_genomes_project 6 118701995 118702842 + TEC TEC MGP_CASTEiJ_T0015046.1 MGP_CASTEiJ_G0013209.1 mouse_genomes_project 6 130535296 130540958 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001883.1 MGP_CASTEiJ_G0001804.1 mouse_genomes_project 6 31171445 31173553 - TEC TEC MGP_CASTEiJ_T0014832.1 MGP_CASTEiJ_G0012995.1 mouse_genomes_project 6 57624745 57627181 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002005.1 MGP_CASTEiJ_G0001926.1 mouse_genomes_project 6 89463121 89466048 + TEC TEC MGP_CASTEiJ_T0077024.1 MGP_CASTEiJ_G0029648.1 mouse_genomes_project 6 29487790 29496414 + 1700012A03Rik protein_coding processed_transcript MGP_CASTEiJ_T0077025.1 MGP_CASTEiJ_G0029648.1 mouse_genomes_project 6 29487812 29496414 + 1700012A03Rik protein_coding processed_transcript MGP_CASTEiJ_T0077026.1 MGP_CASTEiJ_G0029648.1 mouse_genomes_project 6 29487829 29496408 + MGP_CASTEiJ_P0077026 1700012A03Rik protein_coding protein_coding MGP_CASTEiJ_T0077027.1 MGP_CASTEiJ_G0029648.1 mouse_genomes_project 6 29495633 29496114 + 1700012A03Rik protein_coding processed_transcript MGP_CASTEiJ_T0014873.1 MGP_CASTEiJ_G0013036.1 mouse_genomes_project 6 66811398 66811819 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015035.1 MGP_CASTEiJ_G0013198.1 mouse_genomes_project 6 127919597 127919988 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008378.1 MGP_CASTEiJ_G0006787.1 mouse_genomes_project 6 49036310 49040276 - Gm44109 lincRNA lincRNA MGP_CASTEiJ_T0015018.1 MGP_CASTEiJ_G0013181.1 mouse_genomes_project 6 124143071 124143453 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078057.1 MGP_CASTEiJ_G0029916.1 mouse_genomes_project 6 60306844 61557096 + MGP_CASTEiJ_P0078057 Ccser1 protein_coding protein_coding MGP_CASTEiJ_T0078058.1 MGP_CASTEiJ_G0029916.1 mouse_genomes_project 6 60307057 60442970 + Ccser1 protein_coding retained_intron MGP_CASTEiJ_T0078059.1 MGP_CASTEiJ_G0029916.1 mouse_genomes_project 6 60307058 60442601 + Ccser1 protein_coding retained_intron MGP_CASTEiJ_T0078060.1 MGP_CASTEiJ_G0029916.1 mouse_genomes_project 6 60440844 61554466 + MGP_CASTEiJ_P0078060 Ccser1 protein_coding protein_coding MGP_CASTEiJ_T0078061.1 MGP_CASTEiJ_G0029916.1 mouse_genomes_project 6 60444357 60708712 + Ccser1 protein_coding retained_intron MGP_CASTEiJ_T0078062.1 MGP_CASTEiJ_G0029916.1 mouse_genomes_project 6 60450122 60708474 + Ccser1 protein_coding processed_transcript MGP_CASTEiJ_T0078063.1 MGP_CASTEiJ_G0029916.1 mouse_genomes_project 6 60512228 60962455 + MGP_CASTEiJ_P0078063 Ccser1 protein_coding protein_coding MGP_CASTEiJ_T0078064.1 MGP_CASTEiJ_G0029916.1 mouse_genomes_project 6 60512236 60871587 + Ccser1 protein_coding retained_intron MGP_CASTEiJ_T0078065.1 MGP_CASTEiJ_G0029916.1 mouse_genomes_project 6 60512271 60609753 + Ccser1 protein_coding processed_transcript MGP_CASTEiJ_T0078066.1 MGP_CASTEiJ_G0029916.1 mouse_genomes_project 6 60707779 60971340 + MGP_CASTEiJ_P0078066 Ccser1 protein_coding protein_coding MGP_CASTEiJ_T0011302.1 MGP_CASTEiJ_G0009490.1 mouse_genomes_project 6 16349198 16349456 - Gm24213 misc_RNA misc_RNA MGP_CASTEiJ_T0079157.1 MGP_CASTEiJ_G0030138.1 mouse_genomes_project 6 92431994 92520011 - MGP_CASTEiJ_P0079157 Grip2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079158.1 MGP_CASTEiJ_G0030138.1 mouse_genomes_project 6 92431998 92482856 - MGP_CASTEiJ_P0079158 Grip2 protein_coding protein_coding MGP_CASTEiJ_T0079159.1 MGP_CASTEiJ_G0030138.1 mouse_genomes_project 6 92431998 92503583 - MGP_CASTEiJ_P0079159 Grip2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079160.1 MGP_CASTEiJ_G0030138.1 mouse_genomes_project 6 92433937 92482718 - MGP_CASTEiJ_P0079160 Grip2 protein_coding protein_coding MGP_CASTEiJ_T0079161.1 MGP_CASTEiJ_G0030138.1 mouse_genomes_project 6 92442454 92482718 - MGP_CASTEiJ_P0079161 Grip2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079162.1 MGP_CASTEiJ_G0030138.1 mouse_genomes_project 6 92453150 92482793 - MGP_CASTEiJ_P0079162 Grip2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079163.1 MGP_CASTEiJ_G0030138.1 mouse_genomes_project 6 92454207 92471761 - MGP_CASTEiJ_P0079163 Grip2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079164.1 MGP_CASTEiJ_G0030138.1 mouse_genomes_project 6 92467266 92471777 - Grip2 protein_coding retained_intron MGP_CASTEiJ_T0080573.1 MGP_CASTEiJ_G0030407.1 mouse_genomes_project 6 130762269 130799765 + MGP_CASTEiJ_P0080573 protein_coding protein_coding MGP_CASTEiJ_T0080769.1 MGP_CASTEiJ_G0030481.1 mouse_genomes_project 6 137177465 137206881 + MGP_CASTEiJ_P0080769 Crebl2 protein_coding protein_coding MGP_CASTEiJ_T0080770.1 MGP_CASTEiJ_G0030481.1 mouse_genomes_project 6 137177539 137197538 + Crebl2 protein_coding retained_intron MGP_CASTEiJ_T0080771.1 MGP_CASTEiJ_G0030481.1 mouse_genomes_project 6 137177566 137204116 + MGP_CASTEiJ_P0080771 Crebl2 protein_coding protein_coding MGP_CASTEiJ_T0080772.1 MGP_CASTEiJ_G0030481.1 mouse_genomes_project 6 137199111 137202567 + Crebl2 protein_coding retained_intron MGP_CASTEiJ_T0000186.1 MGP_CASTEiJ_G0000141.1 mouse_genomes_project 6 69083435 69083897 - MGP_CASTEiJ_P0000186 Igkv4-81 IG_V_gene IG_V_gene MGP_CASTEiJ_T0008555.1 MGP_CASTEiJ_G0006923.1 mouse_genomes_project 6 150313239 150314512 - Gm15767 lincRNA lincRNA MGP_CASTEiJ_T0008556.1 MGP_CASTEiJ_G0006923.1 mouse_genomes_project 6 150313435 150314504 - Gm15767 lincRNA lincRNA MGP_CASTEiJ_T0014830.1 MGP_CASTEiJ_G0012993.1 mouse_genomes_project 6 57019862 57020123 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008507.1 MGP_CASTEiJ_G0006890.1 mouse_genomes_project 6 126456850 126459528 + Gm44006 lincRNA lincRNA MGP_CASTEiJ_T0076674.1 MGP_CASTEiJ_G0029582.1 mouse_genomes_project 6 19486292 19536147 - MGP_CASTEiJ_P0076674 Fam3c protein_coding protein_coding MGP_CASTEiJ_T0076675.1 MGP_CASTEiJ_G0029582.1 mouse_genomes_project 6 19487649 19536224 - MGP_CASTEiJ_P0076675 Fam3c protein_coding protein_coding MGP_CASTEiJ_T0076676.1 MGP_CASTEiJ_G0029582.1 mouse_genomes_project 6 19487649 19536079 - MGP_CASTEiJ_P0076676 Fam3c protein_coding protein_coding MGP_CASTEiJ_T0076677.1 MGP_CASTEiJ_G0029582.1 mouse_genomes_project 6 19488227 19509456 - Fam3c protein_coding processed_transcript MGP_CASTEiJ_T0076678.1 MGP_CASTEiJ_G0029582.1 mouse_genomes_project 6 19489088 19536054 - MGP_CASTEiJ_P0076678 Fam3c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076679.1 MGP_CASTEiJ_G0029582.1 mouse_genomes_project 6 19502267 19523879 - MGP_CASTEiJ_P0076679 Fam3c protein_coding protein_coding MGP_CASTEiJ_T0014735.1 MGP_CASTEiJ_G0012898.1 mouse_genomes_project 6 13116506 13117115 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010503.1 MGP_CASTEiJ_G0008691.1 mouse_genomes_project 6 122618900 122618995 - Gm25193 miRNA miRNA MGP_CASTEiJ_T0004768.1 MGP_CASTEiJ_G0004107.1 mouse_genomes_project 6 5231210 5256711 - Gm16043 antisense antisense MGP_CASTEiJ_T0099971.1 MGP_CASTEiJ_G0036884.1 mouse_genomes_project 6 108318108 108318290 + Gm22418 snRNA snRNA MGP_CASTEiJ_T0014801.1 MGP_CASTEiJ_G0012964.1 mouse_genomes_project 6 47101997 47103241 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081253.1 MGP_CASTEiJ_G0030571.1 mouse_genomes_project 6 150132194 150156641 + MGP_CASTEiJ_P0081253 Klhl42 protein_coding protein_coding MGP_CASTEiJ_T0081254.1 MGP_CASTEiJ_G0030571.1 mouse_genomes_project 6 150147606 150152016 + Klhl42 protein_coding processed_transcript MGP_CASTEiJ_T0081255.1 MGP_CASTEiJ_G0030571.1 mouse_genomes_project 6 150151936 150154441 + MGP_CASTEiJ_P0081255 Klhl42 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080862.1 MGP_CASTEiJ_G0030500.1 mouse_genomes_project 6 139368166 139374702 + BC049715 protein_coding retained_intron MGP_CASTEiJ_T0080863.1 MGP_CASTEiJ_G0030500.1 mouse_genomes_project 6 139368520 139393686 + MGP_CASTEiJ_P0080863 BC049715 protein_coding protein_coding MGP_CASTEiJ_T0080864.1 MGP_CASTEiJ_G0030500.1 mouse_genomes_project 6 139369378 139394424 + MGP_CASTEiJ_P0080864 BC049715 protein_coding protein_coding MGP_CASTEiJ_T0080865.1 MGP_CASTEiJ_G0030500.1 mouse_genomes_project 6 139371445 139394550 + MGP_CASTEiJ_P0080865 BC049715 protein_coding protein_coding MGP_CASTEiJ_T0080866.1 MGP_CASTEiJ_G0030500.1 mouse_genomes_project 6 139393651 139394395 + MGP_CASTEiJ_P0080866 BC049715 protein_coding protein_coding MGP_CASTEiJ_T0079345.1 MGP_CASTEiJ_G0030176.1 mouse_genomes_project 6 102268852 102516747 - MGP_CASTEiJ_P0079345 Pdzrn3 protein_coding protein_coding MGP_CASTEiJ_T0079346.1 MGP_CASTEiJ_G0030176.1 mouse_genomes_project 6 102277072 102494244 - Pdzrn3 protein_coding processed_transcript MGP_CASTEiJ_T0079347.1 MGP_CASTEiJ_G0030176.1 mouse_genomes_project 6 102291175 102320551 - Pdzrn3 protein_coding retained_intron MGP_CASTEiJ_T0079348.1 MGP_CASTEiJ_G0030176.1 mouse_genomes_project 6 102301255 102516192 - Pdzrn3 protein_coding processed_transcript MGP_CASTEiJ_T0076409.1 MGP_CASTEiJ_G0029534.1 mouse_genomes_project 6 2522527 2837746 + MGP_CASTEiJ_P0076409 Dync1i1 protein_coding protein_coding MGP_CASTEiJ_T0076410.1 MGP_CASTEiJ_G0029534.1 mouse_genomes_project 6 2522651 2837737 + MGP_CASTEiJ_P0076410 Dync1i1 protein_coding protein_coding MGP_CASTEiJ_T0076411.1 MGP_CASTEiJ_G0029534.1 mouse_genomes_project 6 2522679 2837746 + MGP_CASTEiJ_P0076411 Dync1i1 protein_coding protein_coding MGP_CASTEiJ_T0076412.1 MGP_CASTEiJ_G0029534.1 mouse_genomes_project 6 2522700 2837746 + MGP_CASTEiJ_P0076412 Dync1i1 protein_coding protein_coding MGP_CASTEiJ_T0076413.1 MGP_CASTEiJ_G0029534.1 mouse_genomes_project 6 2522706 2568220 + MGP_CASTEiJ_P0076413 Dync1i1 protein_coding protein_coding MGP_CASTEiJ_T0076414.1 MGP_CASTEiJ_G0029534.1 mouse_genomes_project 6 2553842 2838348 + MGP_CASTEiJ_P0076414 Dync1i1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076415.1 MGP_CASTEiJ_G0029534.1 mouse_genomes_project 6 2558592 2588286 + MGP_CASTEiJ_P0076415 Dync1i1 protein_coding protein_coding MGP_CASTEiJ_T0076416.1 MGP_CASTEiJ_G0029534.1 mouse_genomes_project 6 2815724 2837494 + Dync1i1 protein_coding retained_intron MGP_CASTEiJ_T0080463.1 MGP_CASTEiJ_G0030383.1 mouse_genomes_project 6 127867174 128150633 + Ano2 protein_coding retained_intron MGP_CASTEiJ_T0080464.1 MGP_CASTEiJ_G0030383.1 mouse_genomes_project 6 127867174 128229698 + MGP_CASTEiJ_P0080464 Ano2 protein_coding protein_coding MGP_CASTEiJ_T0080465.1 MGP_CASTEiJ_G0030383.1 mouse_genomes_project 6 127867391 128229731 + MGP_CASTEiJ_P0080465 Ano2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0080466.1 MGP_CASTEiJ_G0030383.1 mouse_genomes_project 6 127890095 128229698 + MGP_CASTEiJ_P0080466 Ano2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080467.1 MGP_CASTEiJ_G0030383.1 mouse_genomes_project 6 127890945 127978412 + Ano2 protein_coding processed_transcript MGP_CASTEiJ_T0080468.1 MGP_CASTEiJ_G0030383.1 mouse_genomes_project 6 128004016 128095300 + Ano2 protein_coding processed_transcript MGP_CASTEiJ_T0080469.1 MGP_CASTEiJ_G0030383.1 mouse_genomes_project 6 128004017 128229696 + MGP_CASTEiJ_P0080469 Ano2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000187.1 MGP_CASTEiJ_G0000142.1 mouse_genomes_project 6 69083435 69083933 - MGP_CASTEiJ_P0000187 Igkv4-74 IG_V_gene IG_V_gene MGP_CASTEiJ_T0008487.1 MGP_CASTEiJ_G0006872.1 mouse_genomes_project 6 115270573 115271504 + Gm44053 lincRNA lincRNA MGP_CASTEiJ_T0014796.1 MGP_CASTEiJ_G0012959.1 mouse_genomes_project 6 45909977 45910373 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101631.1 MGP_CASTEiJ_G0038484.1 mouse_genomes_project 6 8872968 8886798 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101632.1 MGP_CASTEiJ_G0038484.1 mouse_genomes_project 6 8873159 8873719 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0078324.1 MGP_CASTEiJ_G0029970.1 mouse_genomes_project 6 72267771 72276898 + MGP_CASTEiJ_P0078324 Retsat protein_coding unknown_likely_coding MGP_CASTEiJ_T0078325.1 MGP_CASTEiJ_G0029970.1 mouse_genomes_project 6 72267898 72277838 + MGP_CASTEiJ_P0078325 Retsat protein_coding protein_coding MGP_CASTEiJ_T0078326.1 MGP_CASTEiJ_G0029970.1 mouse_genomes_project 6 72268051 72276790 + MGP_CASTEiJ_P0078326 Retsat protein_coding protein_coding MGP_CASTEiJ_T0078327.1 MGP_CASTEiJ_G0029970.1 mouse_genomes_project 6 72268051 72276790 + MGP_CASTEiJ_P0078327 Retsat protein_coding protein_coding MGP_CASTEiJ_T0078328.1 MGP_CASTEiJ_G0029970.1 mouse_genomes_project 6 72273786 72275798 + Retsat protein_coding processed_transcript MGP_CASTEiJ_T0078329.1 MGP_CASTEiJ_G0029970.1 mouse_genomes_project 6 72275380 72276851 + MGP_CASTEiJ_P0078329 Retsat protein_coding protein_coding MGP_CASTEiJ_T0078330.1 MGP_CASTEiJ_G0029970.1 mouse_genomes_project 6 72276053 72276620 + MGP_CASTEiJ_P0078330 Retsat protein_coding protein_coding MGP_CASTEiJ_T0014964.1 MGP_CASTEiJ_G0013127.1 mouse_genomes_project 6 103222092 103222877 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077479.1 MGP_CASTEiJ_G0029770.1 mouse_genomes_project 6 41035411 41036397 + MGP_CASTEiJ_P0077479 protein_coding protein_coding MGP_CASTEiJ_T0079620.1 MGP_CASTEiJ_G0030225.1 mouse_genomes_project 6 115289202 115603974 - MGP_CASTEiJ_P0079620 Atp2b2 protein_coding protein_coding MGP_CASTEiJ_T0079621.1 MGP_CASTEiJ_G0030225.1 mouse_genomes_project 6 115291041 115442040 - MGP_CASTEiJ_P0079621 Atp2b2 protein_coding protein_coding MGP_CASTEiJ_T0079622.1 MGP_CASTEiJ_G0030225.1 mouse_genomes_project 6 115292441 115442040 - MGP_CASTEiJ_P0079622 Atp2b2 protein_coding protein_coding MGP_CASTEiJ_T0079623.1 MGP_CASTEiJ_G0030225.1 mouse_genomes_project 6 115293667 115489750 - MGP_CASTEiJ_P0079623 Atp2b2 protein_coding protein_coding MGP_CASTEiJ_T0079624.1 MGP_CASTEiJ_G0030225.1 mouse_genomes_project 6 115297067 115394384 - MGP_CASTEiJ_P0079624 Atp2b2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079625.1 MGP_CASTEiJ_G0030225.1 mouse_genomes_project 6 115355418 115441871 - Atp2b2 protein_coding retained_intron MGP_CASTEiJ_T0079626.1 MGP_CASTEiJ_G0030225.1 mouse_genomes_project 6 115394384 115464156 - Atp2b2 protein_coding processed_transcript MGP_CASTEiJ_T0079627.1 MGP_CASTEiJ_G0030225.1 mouse_genomes_project 6 115394602 115606713 - Atp2b2 protein_coding processed_transcript MGP_CASTEiJ_T0079725.1 MGP_CASTEiJ_G0030244.1 mouse_genomes_project 6 117368186 117380937 - MGP_CASTEiJ_P0079725 Mbd4 protein_coding protein_coding MGP_CASTEiJ_T0079726.1 MGP_CASTEiJ_G0030244.1 mouse_genomes_project 6 117368688 117376273 - Mbd4 protein_coding processed_transcript MGP_CASTEiJ_T0079727.1 MGP_CASTEiJ_G0030244.1 mouse_genomes_project 6 117370100 117380931 - MGP_CASTEiJ_P0079727 Mbd4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079728.1 MGP_CASTEiJ_G0030244.1 mouse_genomes_project 6 117370100 117376534 - MGP_CASTEiJ_P0079728 Mbd4 protein_coding protein_coding MGP_CASTEiJ_T0079729.1 MGP_CASTEiJ_G0030244.1 mouse_genomes_project 6 117375259 117380854 - MGP_CASTEiJ_P0079729 Mbd4 protein_coding protein_coding MGP_CASTEiJ_T0080711.1 MGP_CASTEiJ_G0030449.1 mouse_genomes_project 6 134141080 134142112 - MGP_CASTEiJ_P0080711 Tas2r107 protein_coding protein_coding MGP_CASTEiJ_T0078041.1 MGP_CASTEiJ_G0029911.1 mouse_genomes_project 6 57511711 57610152 - MGP_CASTEiJ_P0078041 Fam13a protein_coding protein_coding MGP_CASTEiJ_T0078042.1 MGP_CASTEiJ_G0029911.1 mouse_genomes_project 6 57515206 57609943 - MGP_CASTEiJ_P0078042 Fam13a protein_coding protein_coding MGP_CASTEiJ_T0078043.1 MGP_CASTEiJ_G0029911.1 mouse_genomes_project 6 57523826 57609976 - MGP_CASTEiJ_P0078043 Fam13a protein_coding unknown_likely_coding MGP_CASTEiJ_T0078044.1 MGP_CASTEiJ_G0029911.1 mouse_genomes_project 6 57555009 57610025 - Fam13a protein_coding processed_transcript MGP_CASTEiJ_T0078045.1 MGP_CASTEiJ_G0029911.1 mouse_genomes_project 6 57591019 57610107 - Fam13a protein_coding retained_intron MGP_CASTEiJ_T0078046.1 MGP_CASTEiJ_G0029911.1 mouse_genomes_project 6 57605733 57610046 - Fam13a protein_coding retained_intron MGP_CASTEiJ_T0004778.1 MGP_CASTEiJ_G0004112.1 mouse_genomes_project 6 15389180 15392360 + Gm15594 antisense antisense MGP_CASTEiJ_T0079498.1 MGP_CASTEiJ_G0030203.1 mouse_genomes_project 6 114804378 114822242 + MGP_CASTEiJ_P0079498 Brpf1 protein_coding protein_coding MGP_CASTEiJ_T0079499.1 MGP_CASTEiJ_G0030203.1 mouse_genomes_project 6 114804407 114822086 + MGP_CASTEiJ_P0079499 Brpf1 protein_coding protein_coding MGP_CASTEiJ_T0079500.1 MGP_CASTEiJ_G0030203.1 mouse_genomes_project 6 114804433 114822105 + MGP_CASTEiJ_P0079500 Brpf1 protein_coding protein_coding MGP_CASTEiJ_T0079501.1 MGP_CASTEiJ_G0030203.1 mouse_genomes_project 6 114804433 114822245 + MGP_CASTEiJ_P0079501 Brpf1 protein_coding protein_coding MGP_CASTEiJ_T0079502.1 MGP_CASTEiJ_G0030203.1 mouse_genomes_project 6 114804465 114822226 + MGP_CASTEiJ_P0079502 Brpf1 protein_coding protein_coding MGP_CASTEiJ_T0079503.1 MGP_CASTEiJ_G0030203.1 mouse_genomes_project 6 114804555 114822007 + MGP_CASTEiJ_P0079503 Brpf1 protein_coding protein_coding MGP_CASTEiJ_T0079504.1 MGP_CASTEiJ_G0030203.1 mouse_genomes_project 6 114804671 114822107 + MGP_CASTEiJ_P0079504 Brpf1 protein_coding protein_coding MGP_CASTEiJ_T0079505.1 MGP_CASTEiJ_G0030203.1 mouse_genomes_project 6 114814567 114815859 + Brpf1 protein_coding retained_intron MGP_CASTEiJ_T0079506.1 MGP_CASTEiJ_G0030203.1 mouse_genomes_project 6 114817773 114819691 + Brpf1 protein_coding retained_intron MGP_CASTEiJ_T0079507.1 MGP_CASTEiJ_G0030203.1 mouse_genomes_project 6 114817931 114822086 + Brpf1 protein_coding retained_intron MGP_CASTEiJ_T0014742.1 MGP_CASTEiJ_G0012905.1 mouse_genomes_project 6 16324420 16327300 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076859.1 MGP_CASTEiJ_G0029625.1 mouse_genomes_project 6 26834611 26846268 + MGP_CASTEiJ_P0076859 Irf5 protein_coding protein_coding MGP_CASTEiJ_T0076860.1 MGP_CASTEiJ_G0029625.1 mouse_genomes_project 6 26834694 26850869 + MGP_CASTEiJ_P0076860 Irf5 protein_coding protein_coding MGP_CASTEiJ_T0076861.1 MGP_CASTEiJ_G0029625.1 mouse_genomes_project 6 26836254 26842946 + MGP_CASTEiJ_P0076861 Irf5 protein_coding protein_coding MGP_CASTEiJ_T0076862.1 MGP_CASTEiJ_G0029625.1 mouse_genomes_project 6 26838245 26846268 + MGP_CASTEiJ_P0076862 Irf5 protein_coding protein_coding MGP_CASTEiJ_T0076863.1 MGP_CASTEiJ_G0029625.1 mouse_genomes_project 6 26840187 26844295 + MGP_CASTEiJ_P0076863 Irf5 protein_coding protein_coding MGP_CASTEiJ_T0076867.1 MGP_CASTEiJ_G0029625.1 mouse_genomes_project 6 26850144 26850856 + Irf5 protein_coding processed_transcript MGP_CASTEiJ_T0001992.1 MGP_CASTEiJ_G0001913.1 mouse_genomes_project 6 88279645 88282803 - TEC TEC MGP_CASTEiJ_T0081231.1 MGP_CASTEiJ_G0030566.1 mouse_genomes_project 6 149925880 150069926 + MGP_CASTEiJ_P0081231 Ppfibp1 protein_coding protein_coding MGP_CASTEiJ_T0081232.1 MGP_CASTEiJ_G0030566.1 mouse_genomes_project 6 149925902 150016075 + MGP_CASTEiJ_P0081232 Ppfibp1 protein_coding protein_coding MGP_CASTEiJ_T0081233.1 MGP_CASTEiJ_G0030566.1 mouse_genomes_project 6 149925982 150069926 + MGP_CASTEiJ_P0081233 Ppfibp1 protein_coding protein_coding MGP_CASTEiJ_T0081236.1 MGP_CASTEiJ_G0030566.1 mouse_genomes_project 6 150014503 150030301 + MGP_CASTEiJ_P0081236 Ppfibp1 protein_coding protein_coding MGP_CASTEiJ_T0081237.1 MGP_CASTEiJ_G0030566.1 mouse_genomes_project 6 150030345 150043842 + MGP_CASTEiJ_P0081237 Ppfibp1 protein_coding protein_coding MGP_CASTEiJ_T0081238.1 MGP_CASTEiJ_G0030566.1 mouse_genomes_project 6 150034329 150040081 + Ppfibp1 protein_coding processed_transcript MGP_CASTEiJ_T0081239.1 MGP_CASTEiJ_G0030566.1 mouse_genomes_project 6 150037374 150069924 + Ppfibp1 protein_coding retained_intron MGP_CASTEiJ_T0081240.1 MGP_CASTEiJ_G0030566.1 mouse_genomes_project 6 150038144 150055350 + Ppfibp1 protein_coding retained_intron MGP_CASTEiJ_T0081241.1 MGP_CASTEiJ_G0030566.1 mouse_genomes_project 6 150039525 150043870 + Ppfibp1 protein_coding retained_intron MGP_CASTEiJ_T0081242.1 MGP_CASTEiJ_G0030566.1 mouse_genomes_project 6 150040074 150057084 + MGP_CASTEiJ_P0081242 Ppfibp1 protein_coding protein_coding MGP_CASTEiJ_T0081243.1 MGP_CASTEiJ_G0030566.1 mouse_genomes_project 6 150042942 150044191 + Ppfibp1 protein_coding retained_intron MGP_CASTEiJ_T0081244.1 MGP_CASTEiJ_G0030566.1 mouse_genomes_project 6 150048793 150057491 + MGP_CASTEiJ_P0081244 Ppfibp1 protein_coding protein_coding MGP_CASTEiJ_T0000292.1 MGP_CASTEiJ_G0000241.1 mouse_genomes_project 6 69275511 69277536 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0101812.1 MGP_CASTEiJ_G0038577.1 mouse_genomes_project 6 133456319 133538396 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0014950.1 MGP_CASTEiJ_G0013113.1 mouse_genomes_project 6 96134412 96138627 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005486.1 MGP_CASTEiJ_G0004628.1 mouse_genomes_project 6 139010894 139014962 - Gm44140 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0077485.1 MGP_CASTEiJ_G0029774.1 mouse_genomes_project 6 41087884 41088826 + MGP_CASTEiJ_P0077485 Olfr435 protein_coding protein_coding MGP_CASTEiJ_T0078038.1 MGP_CASTEiJ_G0029910.1 mouse_genomes_project 6 57481579 57483425 - MGP_CASTEiJ_P0078038 Nap1l5 protein_coding protein_coding MGP_CASTEiJ_T0078039.1 MGP_CASTEiJ_G0029910.1 mouse_genomes_project 6 57482150 57483022 - MGP_CASTEiJ_P0078039 Nap1l5 protein_coding protein_coding MGP_CASTEiJ_T0102424.1 MGP_CASTEiJ_G0039149.1 mouse_genomes_project 6 131471407 131472247 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0080178.1 MGP_CASTEiJ_G0030329.1 mouse_genomes_project 6 125133951 125149211 + MGP_CASTEiJ_P0080178 Clec4n protein_coding protein_coding MGP_CASTEiJ_T0080179.1 MGP_CASTEiJ_G0030329.1 mouse_genomes_project 6 125133962 125149209 + MGP_CASTEiJ_P0080179 Clec4n protein_coding protein_coding MGP_CASTEiJ_T0080180.1 MGP_CASTEiJ_G0030329.1 mouse_genomes_project 6 125133965 125134919 + Clec4n protein_coding processed_transcript MGP_CASTEiJ_T0080181.1 MGP_CASTEiJ_G0030329.1 mouse_genomes_project 6 125133965 125149209 + MGP_CASTEiJ_P0080181 Clec4n protein_coding protein_coding MGP_CASTEiJ_T0080182.1 MGP_CASTEiJ_G0030329.1 mouse_genomes_project 6 125133965 125149209 + MGP_CASTEiJ_P0080182 Clec4n protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080183.1 MGP_CASTEiJ_G0030329.1 mouse_genomes_project 6 125134127 125148774 + MGP_CASTEiJ_P0080183 Clec4n protein_coding protein_coding MGP_CASTEiJ_T0099977.1 MGP_CASTEiJ_G0036890.1 mouse_genomes_project 6 122154429 122154534 - Gm24592 snRNA snRNA MGP_CASTEiJ_T0081051.1 MGP_CASTEiJ_G0030537.1 mouse_genomes_project 6 145244504 145292202 - MGP_CASTEiJ_P0081051 Gys2 protein_coding protein_coding MGP_CASTEiJ_T0081052.1 MGP_CASTEiJ_G0030537.1 mouse_genomes_project 6 145244508 145245511 - MGP_CASTEiJ_P0081052 Gys2 protein_coding protein_coding MGP_CASTEiJ_T0017562.1 MGP_CASTEiJ_G0014965.1 mouse_genomes_project 6 127414501 127436787 + processed_transcript antisense MGP_CASTEiJ_T0017563.1 MGP_CASTEiJ_G0014965.1 mouse_genomes_project 6 127414550 127415571 + processed_transcript retained_intron MGP_CASTEiJ_T0017564.1 MGP_CASTEiJ_G0014965.1 mouse_genomes_project 6 127414570 127419531 + processed_transcript antisense MGP_CASTEiJ_T0017565.1 MGP_CASTEiJ_G0014965.1 mouse_genomes_project 6 127414644 127422550 + processed_transcript antisense MGP_CASTEiJ_T0008533.1 MGP_CASTEiJ_G0006907.1 mouse_genomes_project 6 138168218 138179626 + Gm14329 lincRNA lincRNA MGP_CASTEiJ_T0008536.1 MGP_CASTEiJ_G0006910.1 mouse_genomes_project 6 143733794 143819488 + Gm30524 lincRNA lincRNA MGP_CASTEiJ_T0008537.1 MGP_CASTEiJ_G0006910.1 mouse_genomes_project 6 143733820 143817788 + Gm30524 lincRNA lincRNA MGP_CASTEiJ_T0004783.1 MGP_CASTEiJ_G0004116.1 mouse_genomes_project 6 26814997 26818388 + antisense antisense MGP_CASTEiJ_T0077059.1 MGP_CASTEiJ_G0029654.1 mouse_genomes_project 6 31792983 31831198 - MGP_CASTEiJ_P0077059 Akr1b3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077060.1 MGP_CASTEiJ_G0029654.1 mouse_genomes_project 6 31815150 31821279 - Akr1b3 protein_coding retained_intron MGP_CASTEiJ_T0077061.1 MGP_CASTEiJ_G0029654.1 mouse_genomes_project 6 31816613 31831262 - MGP_CASTEiJ_P0077061 Akr1b3 protein_coding protein_coding MGP_CASTEiJ_T0077062.1 MGP_CASTEiJ_G0029654.1 mouse_genomes_project 6 31821444 31831225 - Akr1b3 protein_coding retained_intron MGP_CASTEiJ_T0077063.1 MGP_CASTEiJ_G0029654.1 mouse_genomes_project 6 31823585 31831214 - Akr1b3 protein_coding retained_intron MGP_CASTEiJ_T0077064.1 MGP_CASTEiJ_G0029654.1 mouse_genomes_project 6 31824398 31831243 - MGP_CASTEiJ_P0077064 Akr1b3 protein_coding protein_coding MGP_CASTEiJ_T0076554.1 MGP_CASTEiJ_G0029563.1 mouse_genomes_project 6 12556284 12642773 + MGP_CASTEiJ_P0076554 Mdfic protein_coding protein_coding MGP_CASTEiJ_T0076555.1 MGP_CASTEiJ_G0029563.1 mouse_genomes_project 6 12556284 12642769 + MGP_CASTEiJ_P0076555 Mdfic protein_coding protein_coding MGP_CASTEiJ_T0076556.1 MGP_CASTEiJ_G0029563.1 mouse_genomes_project 6 12556326 12612035 + MGP_CASTEiJ_P0076556 Mdfic protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076557.1 MGP_CASTEiJ_G0029563.1 mouse_genomes_project 6 12556344 12614109 + MGP_CASTEiJ_P0076557 Mdfic protein_coding protein_coding MGP_CASTEiJ_T0076558.1 MGP_CASTEiJ_G0029563.1 mouse_genomes_project 6 12556710 12641422 + MGP_CASTEiJ_P0076558 Mdfic protein_coding protein_coding MGP_CASTEiJ_T0076559.1 MGP_CASTEiJ_G0029563.1 mouse_genomes_project 6 12566244 12611100 + MGP_CASTEiJ_P0076559 Mdfic protein_coding protein_coding MGP_CASTEiJ_T0017566.1 MGP_CASTEiJ_G0014966.1 mouse_genomes_project 6 127652687 127668812 + Gm26728 processed_transcript antisense MGP_CASTEiJ_T0017567.1 MGP_CASTEiJ_G0014966.1 mouse_genomes_project 6 127652691 127654235 + Gm26728 processed_transcript retained_intron MGP_CASTEiJ_T0017568.1 MGP_CASTEiJ_G0014966.1 mouse_genomes_project 6 127652693 127657982 + Gm26728 processed_transcript antisense MGP_CASTEiJ_T0102441.1 MGP_CASTEiJ_G0039166.1 mouse_genomes_project 6 135535852 135536794 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010456.1 MGP_CASTEiJ_G0008644.1 mouse_genomes_project 6 27523447 27523553 - Mir96 miRNA miRNA MGP_CASTEiJ_T0099980.1 MGP_CASTEiJ_G0036893.1 mouse_genomes_project 6 127086786 127086889 + Gm23851 snRNA snRNA MGP_CASTEiJ_T0001998.1 MGP_CASTEiJ_G0001919.1 mouse_genomes_project 6 88523809 88527418 - TEC TEC MGP_CASTEiJ_T0080590.1 MGP_CASTEiJ_G0030410.1 mouse_genomes_project 6 130827482 130836647 - Fkbp4 protein_coding retained_intron MGP_CASTEiJ_T0080591.1 MGP_CASTEiJ_G0030410.1 mouse_genomes_project 6 130827854 130836647 - MGP_CASTEiJ_P0080591 Fkbp4 protein_coding protein_coding MGP_CASTEiJ_T0080592.1 MGP_CASTEiJ_G0030410.1 mouse_genomes_project 6 130831173 130836110 - MGP_CASTEiJ_P0080592 Fkbp4 protein_coding protein_coding MGP_CASTEiJ_T0080593.1 MGP_CASTEiJ_G0030410.1 mouse_genomes_project 6 130831738 130835623 - MGP_CASTEiJ_P0080593 Fkbp4 protein_coding protein_coding MGP_CASTEiJ_T0099963.1 MGP_CASTEiJ_G0036876.1 mouse_genomes_project 6 94580720 94580827 + Gm23035 snRNA snRNA MGP_CASTEiJ_T0017569.1 MGP_CASTEiJ_G0014967.1 mouse_genomes_project 6 132032279 132034153 - 1700101I11Rik processed_transcript TEC MGP_CASTEiJ_T0017570.1 MGP_CASTEiJ_G0014967.1 mouse_genomes_project 6 132032429 132033620 - 1700101I11Rik processed_transcript antisense MGP_CASTEiJ_T0001856.1 MGP_CASTEiJ_G0001777.1 mouse_genomes_project 6 12471270 12473511 + TEC TEC MGP_CASTEiJ_T0077189.1 MGP_CASTEiJ_G0029678.1 mouse_genomes_project 6 35754284 35757367 - Atp6v0a4 protein_coding processed_transcript MGP_CASTEiJ_T0077190.1 MGP_CASTEiJ_G0029678.1 mouse_genomes_project 6 35754284 35836698 - MGP_CASTEiJ_P0077190 Atp6v0a4 protein_coding protein_coding MGP_CASTEiJ_T0077191.1 MGP_CASTEiJ_G0029678.1 mouse_genomes_project 6 35754284 35821956 - MGP_CASTEiJ_P0077191 Atp6v0a4 protein_coding protein_coding MGP_CASTEiJ_T0077192.1 MGP_CASTEiJ_G0029678.1 mouse_genomes_project 6 35757085 35760920 - Atp6v0a4 protein_coding retained_intron MGP_CASTEiJ_T0077193.1 MGP_CASTEiJ_G0029678.1 mouse_genomes_project 6 35786536 35791004 - Atp6v0a4 protein_coding retained_intron MGP_CASTEiJ_T0077194.1 MGP_CASTEiJ_G0029678.1 mouse_genomes_project 6 35796336 35804904 - Atp6v0a4 protein_coding retained_intron MGP_CASTEiJ_T0077195.1 MGP_CASTEiJ_G0029678.1 mouse_genomes_project 6 35801354 35836601 - Atp6v0a4 protein_coding retained_intron MGP_CASTEiJ_T0078301.1 MGP_CASTEiJ_G0029967.1 mouse_genomes_project 6 72178473 72180121 - Sh2d6 protein_coding processed_transcript MGP_CASTEiJ_T0078302.1 MGP_CASTEiJ_G0029967.1 mouse_genomes_project 6 72178483 72185667 - MGP_CASTEiJ_P0078302 Sh2d6 protein_coding protein_coding MGP_CASTEiJ_T0078303.1 MGP_CASTEiJ_G0029967.1 mouse_genomes_project 6 72178485 72185756 - MGP_CASTEiJ_P0078303 Sh2d6 protein_coding protein_coding MGP_CASTEiJ_T0078304.1 MGP_CASTEiJ_G0029967.1 mouse_genomes_project 6 72178485 72185780 - MGP_CASTEiJ_P0078304 Sh2d6 protein_coding protein_coding MGP_CASTEiJ_T0078305.1 MGP_CASTEiJ_G0029967.1 mouse_genomes_project 6 72180157 72185100 - Sh2d6 protein_coding processed_transcript MGP_CASTEiJ_T0078306.1 MGP_CASTEiJ_G0029967.1 mouse_genomes_project 6 72182250 72186765 - Sh2d6 protein_coding retained_intron MGP_CASTEiJ_T0101811.1 MGP_CASTEiJ_G0038576.1 mouse_genomes_project 6 132643766 132654885 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0002117.1 MGP_CASTEiJ_G0002037.1 mouse_genomes_project 6 151482555 151489297 - TEC TEC MGP_CASTEiJ_T0014791.1 MGP_CASTEiJ_G0012954.1 mouse_genomes_project 6 44782878 44783358 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015068.1 MGP_CASTEiJ_G0013231.1 mouse_genomes_project 6 135421479 135421856 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080300.1 MGP_CASTEiJ_G0030353.1 mouse_genomes_project 6 126931910 126935771 + MGP_CASTEiJ_P0080300 Cdca3 protein_coding protein_coding MGP_CASTEiJ_T0080301.1 MGP_CASTEiJ_G0030353.1 mouse_genomes_project 6 126932051 126936808 + MGP_CASTEiJ_P0080301 Cdca3 protein_coding protein_coding MGP_CASTEiJ_T0080302.1 MGP_CASTEiJ_G0030353.1 mouse_genomes_project 6 126932583 126935692 + MGP_CASTEiJ_P0080302 Cdca3 protein_coding protein_coding MGP_CASTEiJ_T0080303.1 MGP_CASTEiJ_G0030353.1 mouse_genomes_project 6 126932601 126936639 + Cdca3 protein_coding retained_intron MGP_CASTEiJ_T0080304.1 MGP_CASTEiJ_G0030353.1 mouse_genomes_project 6 126932729 126935139 + Cdca3 protein_coding retained_intron MGP_CASTEiJ_T0080305.1 MGP_CASTEiJ_G0030353.1 mouse_genomes_project 6 126932741 126935546 + MGP_CASTEiJ_P0080305 Cdca3 protein_coding protein_coding MGP_CASTEiJ_T0077611.1 MGP_CASTEiJ_G0029799.1 mouse_genomes_project 6 46711549 46730621 + Gm44965 protein_coding processed_transcript MGP_CASTEiJ_T0077612.1 MGP_CASTEiJ_G0029799.1 mouse_genomes_project 6 46711552 46734249 + MGP_CASTEiJ_P0077612 Gm44965 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0001963.1 MGP_CASTEiJ_G0001884.1 mouse_genomes_project 6 80241483 80245050 + TEC TEC MGP_CASTEiJ_T0014879.1 MGP_CASTEiJ_G0013042.1 mouse_genomes_project 6 67657931 67658588 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004987.1 MGP_CASTEiJ_G0004266.1 mouse_genomes_project 6 148460060 148462316 + Gm15499 antisense antisense MGP_CASTEiJ_T0011341.1 MGP_CASTEiJ_G0009529.1 mouse_genomes_project 6 144731081 144731298 - Gm22036 misc_RNA misc_RNA MGP_CASTEiJ_T0078017.1 MGP_CASTEiJ_G0029908.1 mouse_genomes_project 6 57121175 57231503 + MGP_CASTEiJ_P0078017 Abcg2 protein_coding protein_coding MGP_CASTEiJ_T0078018.1 MGP_CASTEiJ_G0029908.1 mouse_genomes_project 6 57134380 57268641 + MGP_CASTEiJ_P0078018 Abcg2 protein_coding protein_coding MGP_CASTEiJ_T0078019.1 MGP_CASTEiJ_G0029908.1 mouse_genomes_project 6 57204501 57231759 + Abcg2 protein_coding retained_intron MGP_CASTEiJ_T0078020.1 MGP_CASTEiJ_G0029908.1 mouse_genomes_project 6 57204515 57232220 + MGP_CASTEiJ_P0078020 Abcg2 protein_coding protein_coding MGP_CASTEiJ_T0078021.1 MGP_CASTEiJ_G0029908.1 mouse_genomes_project 6 57204515 57265833 + MGP_CASTEiJ_P0078021 Abcg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078022.1 MGP_CASTEiJ_G0029908.1 mouse_genomes_project 6 57204519 57263503 + MGP_CASTEiJ_P0078022 Abcg2 protein_coding protein_coding MGP_CASTEiJ_T0078023.1 MGP_CASTEiJ_G0029908.1 mouse_genomes_project 6 57204519 57265475 + MGP_CASTEiJ_P0078023 Abcg2 protein_coding protein_coding MGP_CASTEiJ_T0078024.1 MGP_CASTEiJ_G0029908.1 mouse_genomes_project 6 57204537 57232220 + MGP_CASTEiJ_P0078024 Abcg2 protein_coding protein_coding MGP_CASTEiJ_T0078025.1 MGP_CASTEiJ_G0029908.1 mouse_genomes_project 6 57230382 57231719 + Abcg2 protein_coding retained_intron MGP_CASTEiJ_T0078026.1 MGP_CASTEiJ_G0029908.1 mouse_genomes_project 6 57241288 57265338 + MGP_CASTEiJ_P0078026 Abcg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078027.1 MGP_CASTEiJ_G0029908.1 mouse_genomes_project 6 57244627 57255644 + Abcg2 protein_coding retained_intron MGP_CASTEiJ_T0010448.1 MGP_CASTEiJ_G0008636.1 mouse_genomes_project 6 15413393 15413463 - Gm26233 miRNA miRNA MGP_CASTEiJ_T0078567.1 MGP_CASTEiJ_G0030022.1 mouse_genomes_project 6 83712570 83739322 - Stambp protein_coding retained_intron MGP_CASTEiJ_T0078568.1 MGP_CASTEiJ_G0030022.1 mouse_genomes_project 6 83712576 83739328 - MGP_CASTEiJ_P0078568 Stambp protein_coding protein_coding MGP_CASTEiJ_T0078569.1 MGP_CASTEiJ_G0030022.1 mouse_genomes_project 6 83712583 83742411 - MGP_CASTEiJ_P0078569 Stambp protein_coding protein_coding MGP_CASTEiJ_T0078570.1 MGP_CASTEiJ_G0030022.1 mouse_genomes_project 6 83712713 83718565 - Stambp protein_coding retained_intron MGP_CASTEiJ_T0078571.1 MGP_CASTEiJ_G0030022.1 mouse_genomes_project 6 83713112 83739312 - MGP_CASTEiJ_P0078571 Stambp protein_coding protein_coding MGP_CASTEiJ_T0078572.1 MGP_CASTEiJ_G0030022.1 mouse_genomes_project 6 83717989 83718393 - Stambp protein_coding retained_intron MGP_CASTEiJ_T0078573.1 MGP_CASTEiJ_G0030022.1 mouse_genomes_project 6 83737997 83739334 - Stambp protein_coding retained_intron MGP_CASTEiJ_T0079630.1 MGP_CASTEiJ_G0030227.1 mouse_genomes_project 6 115861552 115895570 + MGP_CASTEiJ_P0079630 Slc6a1 protein_coding protein_coding MGP_CASTEiJ_T0079631.1 MGP_CASTEiJ_G0030227.1 mouse_genomes_project 6 115861707 115890991 + Slc6a1 protein_coding retained_intron MGP_CASTEiJ_T0079632.1 MGP_CASTEiJ_G0030227.1 mouse_genomes_project 6 115861707 115886021 + Slc6a1 protein_coding retained_intron MGP_CASTEiJ_T0079633.1 MGP_CASTEiJ_G0030227.1 mouse_genomes_project 6 115878939 115880844 + Slc6a1 protein_coding processed_transcript MGP_CASTEiJ_T0079634.1 MGP_CASTEiJ_G0030227.1 mouse_genomes_project 6 115880160 115880844 + Slc6a1 protein_coding retained_intron MGP_CASTEiJ_T0079635.1 MGP_CASTEiJ_G0030227.1 mouse_genomes_project 6 115880764 115893628 + MGP_CASTEiJ_P0079635 Slc6a1 protein_coding protein_coding MGP_CASTEiJ_T0079636.1 MGP_CASTEiJ_G0030227.1 mouse_genomes_project 6 115891384 115893651 + Slc6a1 protein_coding retained_intron MGP_CASTEiJ_T0015095.1 MGP_CASTEiJ_G0013258.1 mouse_genomes_project 6 149481656 149481938 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014722.1 MGP_CASTEiJ_G0012885.1 mouse_genomes_project 6 7167430 7168055 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002074.1 MGP_CASTEiJ_G0001994.1 mouse_genomes_project 6 130074854 130077133 - TEC TEC MGP_CASTEiJ_T0014909.1 MGP_CASTEiJ_G0013072.1 mouse_genomes_project 6 82302386 82303058 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079321.1 MGP_CASTEiJ_G0030168.1 mouse_genomes_project 6 100232985 100666036 - MGP_CASTEiJ_P0079321 Gm20696 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079324.1 MGP_CASTEiJ_G0030168.1 mouse_genomes_project 6 100419606 100430357 - Gm20696 protein_coding retained_intron MGP_CASTEiJ_T0079325.1 MGP_CASTEiJ_G0030168.1 mouse_genomes_project 6 100419637 100629593 - Gm20696 protein_coding retained_intron MGP_CASTEiJ_T0077225.1 MGP_CASTEiJ_G0029686.1 mouse_genomes_project 6 36292843 36349113 + MGP_CASTEiJ_P0077225 Luc7l2 protein_coding protein_coding MGP_CASTEiJ_T0077226.1 MGP_CASTEiJ_G0029686.1 mouse_genomes_project 6 36292974 36353323 + MGP_CASTEiJ_P0077226 Luc7l2 protein_coding protein_coding MGP_CASTEiJ_T0077227.1 MGP_CASTEiJ_G0029686.1 mouse_genomes_project 6 36292974 36350460 + MGP_CASTEiJ_P0077227 Luc7l2 protein_coding protein_coding MGP_CASTEiJ_T0077228.1 MGP_CASTEiJ_G0029686.1 mouse_genomes_project 6 36293022 36353321 + MGP_CASTEiJ_P0077228 Luc7l2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077229.1 MGP_CASTEiJ_G0029686.1 mouse_genomes_project 6 36293039 36301134 + Luc7l2 protein_coding retained_intron MGP_CASTEiJ_T0077230.1 MGP_CASTEiJ_G0029686.1 mouse_genomes_project 6 36293039 36301003 + Luc7l2 protein_coding processed_transcript MGP_CASTEiJ_T0077231.1 MGP_CASTEiJ_G0029686.1 mouse_genomes_project 6 36293039 36295820 + Luc7l2 protein_coding processed_transcript MGP_CASTEiJ_T0077232.1 MGP_CASTEiJ_G0029686.1 mouse_genomes_project 6 36293224 36346952 + MGP_CASTEiJ_P0077232 Luc7l2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077233.1 MGP_CASTEiJ_G0029686.1 mouse_genomes_project 6 36293311 36353280 + MGP_CASTEiJ_P0077233 Luc7l2 protein_coding protein_coding MGP_CASTEiJ_T0077234.1 MGP_CASTEiJ_G0029686.1 mouse_genomes_project 6 36293351 36326730 + Luc7l2 protein_coding processed_transcript MGP_CASTEiJ_T0077235.1 MGP_CASTEiJ_G0029686.1 mouse_genomes_project 6 36297533 36330667 + MGP_CASTEiJ_P0077235 Luc7l2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077236.1 MGP_CASTEiJ_G0029686.1 mouse_genomes_project 6 36300725 36352798 + MGP_CASTEiJ_P0077236 Luc7l2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077237.1 MGP_CASTEiJ_G0029686.1 mouse_genomes_project 6 36302299 36312675 + Luc7l2 protein_coding retained_intron MGP_CASTEiJ_T0077238.1 MGP_CASTEiJ_G0029686.1 mouse_genomes_project 6 36313211 36350095 + Luc7l2 protein_coding retained_intron MGP_CASTEiJ_T0014945.1 MGP_CASTEiJ_G0013108.1 mouse_genomes_project 6 95269719 95270136 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081047.1 MGP_CASTEiJ_G0030536.1 mouse_genomes_project 6 145235388 145240534 + MGP_CASTEiJ_P0081047 Spx protein_coding protein_coding MGP_CASTEiJ_T0081048.1 MGP_CASTEiJ_G0030536.1 mouse_genomes_project 6 145235388 145240534 + MGP_CASTEiJ_P0081048 Spx protein_coding unknown_likely_coding MGP_CASTEiJ_T0081049.1 MGP_CASTEiJ_G0030536.1 mouse_genomes_project 6 145235963 145241711 + Spx protein_coding retained_intron MGP_CASTEiJ_T0081050.1 MGP_CASTEiJ_G0030536.1 mouse_genomes_project 6 145236473 145241711 + Spx protein_coding retained_intron MGP_CASTEiJ_T0011328.1 MGP_CASTEiJ_G0009516.1 mouse_genomes_project 6 88928145 88928469 + Gm25178 misc_RNA misc_RNA MGP_CASTEiJ_T0080714.1 MGP_CASTEiJ_G0030452.1 mouse_genomes_project 6 134168045 134169009 - MGP_CASTEiJ_P0080714 Tas2r105 protein_coding protein_coding MGP_CASTEiJ_T0079884.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120240816 120892841 - MGP_CASTEiJ_P0079884 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079885.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120247288 120250408 - Cacna1c protein_coding processed_transcript MGP_CASTEiJ_T0079886.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120247303 120419398 - Cacna1c protein_coding processed_transcript MGP_CASTEiJ_T0079887.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120247448 120800040 - MGP_CASTEiJ_P0079887 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079888.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120247927 120800087 - MGP_CASTEiJ_P0079888 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079889.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120247927 120800040 - MGP_CASTEiJ_P0079889 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079890.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120248067 120893028 - MGP_CASTEiJ_P0079890 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079891.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120248632 120892997 - MGP_CASTEiJ_P0079891 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079892.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120248632 120800317 - MGP_CASTEiJ_P0079892 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079893.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120248779 120799826 - MGP_CASTEiJ_P0079893 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079894.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120248779 120799826 - MGP_CASTEiJ_P0079894 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079895.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120248779 120799826 - MGP_CASTEiJ_P0079895 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079896.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120248779 120799826 - MGP_CASTEiJ_P0079896 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079897.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120248779 120799826 - MGP_CASTEiJ_P0079897 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079898.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120248779 120799826 - MGP_CASTEiJ_P0079898 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079899.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120248785 120771980 - MGP_CASTEiJ_P0079899 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079900.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120248878 120892841 - MGP_CASTEiJ_P0079900 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079901.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120248878 120799826 - MGP_CASTEiJ_P0079901 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079902.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120248878 120799826 - MGP_CASTEiJ_P0079902 Cacna1c protein_coding protein_coding MGP_CASTEiJ_T0079903.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120271625 120285215 - Cacna1c protein_coding processed_transcript MGP_CASTEiJ_T0079904.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120361650 120366584 - Cacna1c protein_coding retained_intron MGP_CASTEiJ_T0079905.1 MGP_CASTEiJ_G0030276.1 mouse_genomes_project 6 120624181 120893019 - Cacna1c protein_coding processed_transcript MGP_CASTEiJ_T0014981.1 MGP_CASTEiJ_G0013144.1 mouse_genomes_project 6 110785016 110785641 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078217.1 MGP_CASTEiJ_G0029952.1 mouse_genomes_project 6 71415324 71426157 - MGP_CASTEiJ_P0078217 Mrpl35 protein_coding protein_coding MGP_CASTEiJ_T0078218.1 MGP_CASTEiJ_G0029952.1 mouse_genomes_project 6 71418481 71426110 - MGP_CASTEiJ_P0078218 Mrpl35 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078219.1 MGP_CASTEiJ_G0029952.1 mouse_genomes_project 6 71419987 71429323 - Mrpl35 protein_coding processed_transcript MGP_CASTEiJ_T0077980.1 MGP_CASTEiJ_G0029889.1 mouse_genomes_project 6 55860356 55861256 + MGP_CASTEiJ_P0077980 Vmn1r15 protein_coding protein_coding MGP_CASTEiJ_T0015037.1 MGP_CASTEiJ_G0013200.1 mouse_genomes_project 6 129159390 129160284 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078392.1 MGP_CASTEiJ_G0029989.1 mouse_genomes_project 6 81986214 82026843 + MGP_CASTEiJ_P0078392 Gcfc2 protein_coding protein_coding MGP_CASTEiJ_T0078393.1 MGP_CASTEiJ_G0029989.1 mouse_genomes_project 6 81986218 82026184 + MGP_CASTEiJ_P0078393 Gcfc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078394.1 MGP_CASTEiJ_G0029989.1 mouse_genomes_project 6 81986225 82008365 + Gcfc2 protein_coding retained_intron MGP_CASTEiJ_T0078395.1 MGP_CASTEiJ_G0029989.1 mouse_genomes_project 6 81993141 81993588 + Gcfc2 protein_coding retained_intron MGP_CASTEiJ_T0078396.1 MGP_CASTEiJ_G0029989.1 mouse_genomes_project 6 81995289 81996717 + Gcfc2 protein_coding retained_intron MGP_CASTEiJ_T0078397.1 MGP_CASTEiJ_G0029989.1 mouse_genomes_project 6 82005473 82007871 + Gcfc2 protein_coding retained_intron MGP_CASTEiJ_T0078398.1 MGP_CASTEiJ_G0029989.1 mouse_genomes_project 6 82011993 82024984 + MGP_CASTEiJ_P0078398 Gcfc2 protein_coding protein_coding MGP_CASTEiJ_T0078399.1 MGP_CASTEiJ_G0029989.1 mouse_genomes_project 6 82015118 82023873 + Gcfc2 protein_coding retained_intron MGP_CASTEiJ_T0080728.1 MGP_CASTEiJ_G0030465.1 mouse_genomes_project 6 135340221 135341158 - MGP_CASTEiJ_P0080728 Tas2r125 protein_coding protein_coding MGP_CASTEiJ_T0001962.1 MGP_CASTEiJ_G0001883.1 mouse_genomes_project 6 80183565 80185572 + TEC TEC MGP_CASTEiJ_T0002634.1 MGP_CASTEiJ_G0002524.1 mouse_genomes_project 6 38954206 38954608 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0001926.1 MGP_CASTEiJ_G0001847.1 mouse_genomes_project 6 55502428 55505425 - TEC TEC MGP_CASTEiJ_T0077041.1 MGP_CASTEiJ_G0029651.1 mouse_genomes_project 6 30709477 31458902 + MGP_CASTEiJ_P0077041 Exoc4 protein_coding protein_coding MGP_CASTEiJ_T0077042.1 MGP_CASTEiJ_G0029651.1 mouse_genomes_project 6 30709520 30820733 + Exoc4 protein_coding retained_intron MGP_CASTEiJ_T0077043.1 MGP_CASTEiJ_G0029651.1 mouse_genomes_project 6 30709520 31296847 + Exoc4 protein_coding processed_transcript MGP_CASTEiJ_T0077044.1 MGP_CASTEiJ_G0029651.1 mouse_genomes_project 6 30709520 30958784 + MGP_CASTEiJ_P0077044 Exoc4 protein_coding protein_coding MGP_CASTEiJ_T0077045.1 MGP_CASTEiJ_G0029651.1 mouse_genomes_project 6 30709524 31066212 + MGP_CASTEiJ_P0077045 Exoc4 protein_coding protein_coding MGP_CASTEiJ_T0077046.1 MGP_CASTEiJ_G0029651.1 mouse_genomes_project 6 30709528 30788358 + Exoc4 protein_coding processed_transcript MGP_CASTEiJ_T0077047.1 MGP_CASTEiJ_G0029651.1 mouse_genomes_project 6 30801683 30984885 + Exoc4 protein_coding processed_transcript MGP_CASTEiJ_T0077048.1 MGP_CASTEiJ_G0029651.1 mouse_genomes_project 6 30802742 30818142 + Exoc4 protein_coding retained_intron MGP_CASTEiJ_T0077049.1 MGP_CASTEiJ_G0029651.1 mouse_genomes_project 6 31182834 31342223 + Exoc4 protein_coding processed_transcript MGP_CASTEiJ_T0077050.1 MGP_CASTEiJ_G0029651.1 mouse_genomes_project 6 31342162 31356157 + Exoc4 protein_coding processed_transcript MGP_CASTEiJ_T0014807.1 MGP_CASTEiJ_G0012970.1 mouse_genomes_project 6 47313293 47313495 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000288.1 MGP_CASTEiJ_G0000237.1 mouse_genomes_project 6 69110102 69110565 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0081214.1 MGP_CASTEiJ_G0030562.1 mouse_genomes_project 6 149685920 149686335 - MGP_CASTEiJ_P0081214 protein_coding protein_coding MGP_CASTEiJ_T0004960.1 MGP_CASTEiJ_G0004242.1 mouse_genomes_project 6 131490061 131492485 - Gm44000 antisense antisense MGP_CASTEiJ_T0017554.1 MGP_CASTEiJ_G0014961.1 mouse_genomes_project 6 117888695 117892194 - Gm44957 processed_transcript retained_intron MGP_CASTEiJ_T0017555.1 MGP_CASTEiJ_G0014961.1 mouse_genomes_project 6 117888710 117892680 - Gm44957 processed_transcript bidirectional_promoter_lncRNA MGP_CASTEiJ_T0004944.1 MGP_CASTEiJ_G0004229.1 mouse_genomes_project 6 127033184 127042008 + A230083G16Rik antisense antisense MGP_CASTEiJ_T0004942.1 MGP_CASTEiJ_G0004227.1 mouse_genomes_project 6 126815203 126818439 - Gm15884 antisense antisense MGP_CASTEiJ_T0001976.1 MGP_CASTEiJ_G0001897.1 mouse_genomes_project 6 85947503 85950605 + TEC TEC MGP_CASTEiJ_T0014817.1 MGP_CASTEiJ_G0012980.1 mouse_genomes_project 6 50730935 50731209 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001917.1 MGP_CASTEiJ_G0001838.1 mouse_genomes_project 6 50669667 50670397 + TEC TEC MGP_CASTEiJ_T0001938.1 MGP_CASTEiJ_G0001859.1 mouse_genomes_project 6 71387256 71392230 + TEC TEC MGP_CASTEiJ_T0076904.1 MGP_CASTEiJ_G0029630.1 mouse_genomes_project 6 27256286 27299596 + MGP_CASTEiJ_P0076904 Strip2 protein_coding protein_coding MGP_CASTEiJ_T0076905.1 MGP_CASTEiJ_G0029630.1 mouse_genomes_project 6 27256287 27285671 + Strip2 protein_coding retained_intron MGP_CASTEiJ_T0076906.1 MGP_CASTEiJ_G0029630.1 mouse_genomes_project 6 27256287 27297689 + Strip2 protein_coding retained_intron MGP_CASTEiJ_T0076907.1 MGP_CASTEiJ_G0029630.1 mouse_genomes_project 6 27256287 27299602 + MGP_CASTEiJ_P0076907 Strip2 protein_coding protein_coding MGP_CASTEiJ_T0076908.1 MGP_CASTEiJ_G0029630.1 mouse_genomes_project 6 27256287 27287201 + MGP_CASTEiJ_P0076908 Strip2 protein_coding protein_coding MGP_CASTEiJ_T0076957.1 MGP_CASTEiJ_G0029636.1 mouse_genomes_project 6 27903117 27913495 + MGP_CASTEiJ_P0076957 Ssmem1 protein_coding protein_coding MGP_CASTEiJ_T0076958.1 MGP_CASTEiJ_G0029636.1 mouse_genomes_project 6 27905557 27913496 + MGP_CASTEiJ_P0076958 Ssmem1 protein_coding protein_coding MGP_CASTEiJ_T0076959.1 MGP_CASTEiJ_G0029636.1 mouse_genomes_project 6 27906967 27912788 + MGP_CASTEiJ_P0076959 Ssmem1 protein_coding protein_coding MGP_CASTEiJ_T0080606.1 MGP_CASTEiJ_G0030415.1 mouse_genomes_project 6 131107895 131109860 - Klrb1 protein_coding processed_transcript MGP_CASTEiJ_T0080607.1 MGP_CASTEiJ_G0030415.1 mouse_genomes_project 6 131108510 131129222 - MGP_CASTEiJ_P0080607 Klrb1 protein_coding protein_coding MGP_CASTEiJ_T0010469.1 MGP_CASTEiJ_G0008657.1 mouse_genomes_project 6 49540282 49540381 - Mir148a miRNA miRNA MGP_CASTEiJ_T0080151.1 MGP_CASTEiJ_G0030319.1 mouse_genomes_project 6 124647415 124662807 - MGP_CASTEiJ_P0080151 Slc2a3 protein_coding protein_coding MGP_CASTEiJ_T0080152.1 MGP_CASTEiJ_G0030319.1 mouse_genomes_project 6 124647432 124662281 - Slc2a3 protein_coding retained_intron MGP_CASTEiJ_T0080153.1 MGP_CASTEiJ_G0030319.1 mouse_genomes_project 6 124649532 124662149 - MGP_CASTEiJ_P0080153 Slc2a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080154.1 MGP_CASTEiJ_G0030319.1 mouse_genomes_project 6 124650941 124652380 - Slc2a3 protein_coding retained_intron MGP_CASTEiJ_T0080155.1 MGP_CASTEiJ_G0030319.1 mouse_genomes_project 6 124656768 124728363 - MGP_CASTEiJ_P0080155 Slc2a3 protein_coding protein_coding MGP_CASTEiJ_T0080156.1 MGP_CASTEiJ_G0030319.1 mouse_genomes_project 6 124656961 124702747 - MGP_CASTEiJ_P0080156 Slc2a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080157.1 MGP_CASTEiJ_G0030319.1 mouse_genomes_project 6 124659560 124662021 - MGP_CASTEiJ_P0080157 Slc2a3 protein_coding protein_coding MGP_CASTEiJ_T0080158.1 MGP_CASTEiJ_G0030319.1 mouse_genomes_project 6 124659619 124662985 - MGP_CASTEiJ_P0080158 Slc2a3 protein_coding protein_coding MGP_CASTEiJ_T0099936.1 MGP_CASTEiJ_G0036849.1 mouse_genomes_project 6 3761986 3762148 - Gm22155 snRNA snRNA MGP_CASTEiJ_T0004952.1 MGP_CASTEiJ_G0004236.1 mouse_genomes_project 6 129392333 129459300 + 9330179D12Rik antisense antisense MGP_CASTEiJ_T0004953.1 MGP_CASTEiJ_G0004236.1 mouse_genomes_project 6 129392570 129459592 + 9330179D12Rik antisense antisense MGP_CASTEiJ_T0014880.1 MGP_CASTEiJ_G0013043.1 mouse_genomes_project 6 67833194 67833919 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080683.1 MGP_CASTEiJ_G0030438.1 mouse_genomes_project 6 132222260 132243002 - MGP_CASTEiJ_P0080683 Klri1 protein_coding protein_coding MGP_CASTEiJ_T0015024.1 MGP_CASTEiJ_G0013187.1 mouse_genomes_project 6 125037212 125037363 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002093.1 MGP_CASTEiJ_G0002013.1 mouse_genomes_project 6 139401652 139402158 - TEC TEC MGP_CASTEiJ_T0077482.1 MGP_CASTEiJ_G0029772.1 mouse_genomes_project 6 41047354 41051819 + MGP_CASTEiJ_P0077482 Olfr437 protein_coding protein_coding MGP_CASTEiJ_T0077483.1 MGP_CASTEiJ_G0029772.1 mouse_genomes_project 6 41050801 41051819 + MGP_CASTEiJ_P0077483 Olfr437 protein_coding protein_coding MGP_CASTEiJ_T0080636.1 MGP_CASTEiJ_G0030426.1 mouse_genomes_project 6 131897076 131906491 + MGP_CASTEiJ_P0080636 Clec1b protein_coding protein_coding MGP_CASTEiJ_T0080637.1 MGP_CASTEiJ_G0030426.1 mouse_genomes_project 6 131897386 131906421 + MGP_CASTEiJ_P0080637 Clec1b protein_coding protein_coding MGP_CASTEiJ_T0080638.1 MGP_CASTEiJ_G0030426.1 mouse_genomes_project 6 131897389 131906417 + MGP_CASTEiJ_P0080638 Clec1b protein_coding protein_coding MGP_CASTEiJ_T0080639.1 MGP_CASTEiJ_G0030426.1 mouse_genomes_project 6 131903399 131910507 + Clec1b protein_coding retained_intron MGP_CASTEiJ_T0099974.1 MGP_CASTEiJ_G0036887.1 mouse_genomes_project 6 114518476 114518568 - Gm23244 snRNA snRNA MGP_CASTEiJ_T0077674.1 MGP_CASTEiJ_G0029814.1 mouse_genomes_project 6 47069019 47072814 + MGP_CASTEiJ_P0077674 1600015I10Rik protein_coding protein_coding MGP_CASTEiJ_T0001885.1 MGP_CASTEiJ_G0001806.1 mouse_genomes_project 6 33737756 33740145 - TEC TEC MGP_CASTEiJ_T0015015.1 MGP_CASTEiJ_G0013178.1 mouse_genomes_project 6 123754569 123754701 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099976.1 MGP_CASTEiJ_G0036889.1 mouse_genomes_project 6 120498626 120498727 + Gm25905 snRNA snRNA MGP_CASTEiJ_T0008435.1 MGP_CASTEiJ_G0006832.1 mouse_genomes_project 6 84643018 84654064 - Gm10445 lincRNA lincRNA MGP_CASTEiJ_T0004797.1 MGP_CASTEiJ_G0004128.1 mouse_genomes_project 6 34535939 34581495 + 1700111E14Rik antisense antisense MGP_CASTEiJ_T0076397.1 MGP_CASTEiJ_G0029531.1 mouse_genomes_project 6 2051197 2091172 - MGP_CASTEiJ_P0076397 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076398.1 MGP_CASTEiJ_G0029531.1 mouse_genomes_project 6 2055115 2091274 - MGP_CASTEiJ_P0076398 protein_coding protein_coding MGP_CASTEiJ_T0076399.1 MGP_CASTEiJ_G0029531.1 mouse_genomes_project 6 2061155 2091149 - protein_coding retained_intron MGP_CASTEiJ_T0076400.1 MGP_CASTEiJ_G0029531.1 mouse_genomes_project 6 2063982 2080056 - protein_coding processed_transcript MGP_CASTEiJ_T0076401.1 MGP_CASTEiJ_G0029531.1 mouse_genomes_project 6 2068547 2071390 - protein_coding retained_intron MGP_CASTEiJ_T0014753.1 MGP_CASTEiJ_G0012916.1 mouse_genomes_project 6 22233107 22233905 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008331.1 MGP_CASTEiJ_G0006757.1 mouse_genomes_project 6 28779911 28793623 + Gm13844 lincRNA lincRNA MGP_CASTEiJ_T0080969.1 MGP_CASTEiJ_G0030519.1 mouse_genomes_project 6 142772449 142773356 + Capza3 protein_coding processed_transcript MGP_CASTEiJ_T0080970.1 MGP_CASTEiJ_G0030519.1 mouse_genomes_project 6 142772754 142773975 + MGP_CASTEiJ_P0080970 Capza3 protein_coding protein_coding MGP_CASTEiJ_T0101199.1 MGP_CASTEiJ_G0038112.1 mouse_genomes_project 6 117338274 117338414 - Snora7a snoRNA snoRNA MGP_CASTEiJ_T0004892.1 MGP_CASTEiJ_G0004191.1 mouse_genomes_project 6 89251002 89262003 - Gm26588 antisense antisense MGP_CASTEiJ_T0004893.1 MGP_CASTEiJ_G0004191.1 mouse_genomes_project 6 89253822 89260651 - Gm26588 antisense antisense MGP_CASTEiJ_T0004940.1 MGP_CASTEiJ_G0004225.1 mouse_genomes_project 6 124741831 124750245 - Gm26826 antisense antisense MGP_CASTEiJ_T0078805.1 MGP_CASTEiJ_G0030066.1 mouse_genomes_project 6 86944363 86946201 - MGP_CASTEiJ_P0078805 Pcbp1 protein_coding protein_coding MGP_CASTEiJ_T0015070.1 MGP_CASTEiJ_G0013233.1 mouse_genomes_project 6 135532953 135533602 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001897.1 MGP_CASTEiJ_G0001818.1 mouse_genomes_project 6 43165025 43168704 + TEC TEC MGP_CASTEiJ_T0004842.1 MGP_CASTEiJ_G0004163.1 mouse_genomes_project 6 71991714 71993151 - Gm45051 antisense antisense MGP_CASTEiJ_T0077805.1 MGP_CASTEiJ_G0029847.1 mouse_genomes_project 6 50624712 50628429 - MGP_CASTEiJ_P0077805 Hoxa13 protein_coding protein_coding MGP_CASTEiJ_T0008337.1 MGP_CASTEiJ_G0006760.1 mouse_genomes_project 6 29078830 29091438 + lincRNA lincRNA MGP_CASTEiJ_T0008376.1 MGP_CASTEiJ_G0006786.1 mouse_genomes_project 6 49013349 49052152 + C530044C16Rik lincRNA lincRNA MGP_CASTEiJ_T0008377.1 MGP_CASTEiJ_G0006786.1 mouse_genomes_project 6 49013558 49052291 + C530044C16Rik lincRNA lincRNA MGP_CASTEiJ_T0001905.1 MGP_CASTEiJ_G0001826.1 mouse_genomes_project 6 43881706 43884949 + TEC TEC MGP_CASTEiJ_T0078811.1 MGP_CASTEiJ_G0030069.1 mouse_genomes_project 6 87100524 87109892 - MGP_CASTEiJ_P0078811 Snrnp27 protein_coding protein_coding MGP_CASTEiJ_T0078812.1 MGP_CASTEiJ_G0030069.1 mouse_genomes_project 6 87100778 87109861 - Snrnp27 protein_coding processed_transcript MGP_CASTEiJ_T0078813.1 MGP_CASTEiJ_G0030069.1 mouse_genomes_project 6 87101045 87109892 - MGP_CASTEiJ_P0078813 Snrnp27 protein_coding protein_coding MGP_CASTEiJ_T0078814.1 MGP_CASTEiJ_G0030069.1 mouse_genomes_project 6 87108044 87109887 - Snrnp27 protein_coding processed_transcript MGP_CASTEiJ_T0002011.1 MGP_CASTEiJ_G0001932.1 mouse_genomes_project 6 91851374 91854200 - TEC TEC MGP_CASTEiJ_T0002091.1 MGP_CASTEiJ_G0002011.1 mouse_genomes_project 6 139124046 139126421 + TEC TEC MGP_CASTEiJ_T0079742.1 MGP_CASTEiJ_G0030246.1 mouse_genomes_project 6 117455980 117464282 + MGP_CASTEiJ_P0079742 Rho protein_coding protein_coding MGP_CASTEiJ_T0079743.1 MGP_CASTEiJ_G0030246.1 mouse_genomes_project 6 117456157 117458325 + Rho protein_coding retained_intron MGP_CASTEiJ_T0079744.1 MGP_CASTEiJ_G0030246.1 mouse_genomes_project 6 117456797 117460938 + MGP_CASTEiJ_P0079744 Rho protein_coding protein_coding MGP_CASTEiJ_T0079745.1 MGP_CASTEiJ_G0030246.1 mouse_genomes_project 6 117458568 117461183 + MGP_CASTEiJ_P0079745 Rho protein_coding protein_coding MGP_CASTEiJ_T0079746.1 MGP_CASTEiJ_G0030246.1 mouse_genomes_project 6 117458601 117461303 + MGP_CASTEiJ_P0079746 Rho protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079747.1 MGP_CASTEiJ_G0030246.1 mouse_genomes_project 6 117458967 117460275 + Rho protein_coding retained_intron MGP_CASTEiJ_T0079748.1 MGP_CASTEiJ_G0030246.1 mouse_genomes_project 6 117459427 117460459 + Rho protein_coding retained_intron MGP_CASTEiJ_T0008538.1 MGP_CASTEiJ_G0006911.1 mouse_genomes_project 6 144679726 144686974 + Gm44244 lincRNA lincRNA MGP_CASTEiJ_T0080533.1 MGP_CASTEiJ_G0030400.1 mouse_genomes_project 6 130203863 130277220 + MGP_CASTEiJ_P0080533 Tspan11 protein_coding protein_coding MGP_CASTEiJ_T0080534.1 MGP_CASTEiJ_G0030400.1 mouse_genomes_project 6 130204050 130242604 + Tspan11 protein_coding retained_intron MGP_CASTEiJ_T0080535.1 MGP_CASTEiJ_G0030400.1 mouse_genomes_project 6 130230357 130274113 + MGP_CASTEiJ_P0080535 Tspan11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076372.1 MGP_CASTEiJ_G0029527.1 mouse_genomes_project 6 1492245 1506954 + MGP_CASTEiJ_P0076372 protein_coding protein_coding MGP_CASTEiJ_T0076373.1 MGP_CASTEiJ_G0029527.1 mouse_genomes_project 6 1492245 1506957 + MGP_CASTEiJ_P0076373 protein_coding protein_coding MGP_CASTEiJ_T0076374.1 MGP_CASTEiJ_G0029527.1 mouse_genomes_project 6 1492345 1506957 + MGP_CASTEiJ_P0076374 protein_coding protein_coding MGP_CASTEiJ_T0015059.1 MGP_CASTEiJ_G0013222.1 mouse_genomes_project 6 133755836 133756569 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001912.1 MGP_CASTEiJ_G0001833.1 mouse_genomes_project 6 44496524 44498995 + TEC TEC MGP_CASTEiJ_T0008513.1 MGP_CASTEiJ_G0006896.1 mouse_genomes_project 6 130188288 130191934 - Gm42810 lincRNA lincRNA MGP_CASTEiJ_T0014907.1 MGP_CASTEiJ_G0013070.1 mouse_genomes_project 6 81454418 81454871 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076423.1 MGP_CASTEiJ_G0029536.1 mouse_genomes_project 6 3388757 3410243 - MGP_CASTEiJ_P0076423 Shfm1 protein_coding protein_coding MGP_CASTEiJ_T0076424.1 MGP_CASTEiJ_G0029536.1 mouse_genomes_project 6 3408002 3410248 - Shfm1 protein_coding retained_intron MGP_CASTEiJ_T0014972.1 MGP_CASTEiJ_G0013135.1 mouse_genomes_project 6 108408698 108409152 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017504.1 MGP_CASTEiJ_G0014944.1 mouse_genomes_project 6 46860240 46862493 - Gimap1os processed_transcript antisense MGP_CASTEiJ_T0017505.1 MGP_CASTEiJ_G0014944.1 mouse_genomes_project 6 46861398 46863309 - Gimap1os processed_transcript retained_intron MGP_CASTEiJ_T0004897.1 MGP_CASTEiJ_G0004195.1 mouse_genomes_project 6 91308846 91309945 + Gm44123 antisense antisense MGP_CASTEiJ_T0077910.1 MGP_CASTEiJ_G0029867.1 mouse_genomes_project 6 53682736 53687215 - MGP_CASTEiJ_P0077910 Inmt protein_coding protein_coding MGP_CASTEiJ_T0077911.1 MGP_CASTEiJ_G0029867.1 mouse_genomes_project 6 53684934 53687186 - Inmt protein_coding retained_intron MGP_CASTEiJ_T0011307.1 MGP_CASTEiJ_G0009495.1 mouse_genomes_project 6 45838252 45838354 + Rny3 misc_RNA misc_RNA MGP_CASTEiJ_T0002605.1 MGP_CASTEiJ_G0002500.1 mouse_genomes_project 6 39070927 39071632 + MGP_CASTEiJ_P0002605 Trbv20 TR_V_gene TR_V_gene MGP_CASTEiJ_T0010465.1 MGP_CASTEiJ_G0008653.1 mouse_genomes_project 6 45863560 45863637 - Mir704 miRNA miRNA MGP_CASTEiJ_T0015017.1 MGP_CASTEiJ_G0013180.1 mouse_genomes_project 6 124143070 124143453 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080727.1 MGP_CASTEiJ_G0030464.1 mouse_genomes_project 6 135304618 135305583 - MGP_CASTEiJ_P0080727 Tas2r129 protein_coding protein_coding MGP_CASTEiJ_T0079529.1 MGP_CASTEiJ_G0030208.1 mouse_genomes_project 6 114899404 114909655 + MGP_CASTEiJ_P0079529 Ttll3 protein_coding protein_coding MGP_CASTEiJ_T0079530.1 MGP_CASTEiJ_G0030208.1 mouse_genomes_project 6 114900881 114909055 + Ttll3 protein_coding processed_transcript MGP_CASTEiJ_T0079531.1 MGP_CASTEiJ_G0030208.1 mouse_genomes_project 6 114902604 114926528 + MGP_CASTEiJ_P0079531 Ttll3 protein_coding protein_coding MGP_CASTEiJ_T0079532.1 MGP_CASTEiJ_G0030208.1 mouse_genomes_project 6 114902643 114926514 + MGP_CASTEiJ_P0079532 Ttll3 protein_coding protein_coding MGP_CASTEiJ_T0079533.1 MGP_CASTEiJ_G0030208.1 mouse_genomes_project 6 114903316 114926524 + MGP_CASTEiJ_P0079533 Ttll3 protein_coding protein_coding MGP_CASTEiJ_T0079534.1 MGP_CASTEiJ_G0030208.1 mouse_genomes_project 6 114903333 114920083 + MGP_CASTEiJ_P0079534 Ttll3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079535.1 MGP_CASTEiJ_G0030208.1 mouse_genomes_project 6 114907940 114926507 + Ttll3 protein_coding retained_intron MGP_CASTEiJ_T0079536.1 MGP_CASTEiJ_G0030208.1 mouse_genomes_project 6 114919389 114920083 + Ttll3 protein_coding processed_transcript MGP_CASTEiJ_T0079537.1 MGP_CASTEiJ_G0030208.1 mouse_genomes_project 6 114924775 114926503 + Ttll3 protein_coding processed_transcript MGP_CASTEiJ_T0005483.1 MGP_CASTEiJ_G0004626.1 mouse_genomes_project 6 117189511 117191325 + D830050J10Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0005484.1 MGP_CASTEiJ_G0004626.1 mouse_genomes_project 6 117189538 117190680 + D830050J10Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0008289.1 MGP_CASTEiJ_G0006729.1 mouse_genomes_project 6 3321365 3342389 + Gm20685 lincRNA lincRNA MGP_CASTEiJ_T0004836.1 MGP_CASTEiJ_G0004158.1 mouse_genomes_project 6 66371407 66372644 - antisense antisense MGP_CASTEiJ_T0015069.1 MGP_CASTEiJ_G0013232.1 mouse_genomes_project 6 135421480 135421839 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076766.1 MGP_CASTEiJ_G0029607.1 mouse_genomes_project 6 25670473 25684214 + MGP_CASTEiJ_P0076766 Fscn3 protein_coding protein_coding MGP_CASTEiJ_T0076767.1 MGP_CASTEiJ_G0029607.1 mouse_genomes_project 6 25677455 25679053 + Fscn3 protein_coding processed_transcript MGP_CASTEiJ_T0079685.1 MGP_CASTEiJ_G0030235.1 mouse_genomes_project 6 116860553 116993519 + MGP_CASTEiJ_P0079685 Pparg protein_coding protein_coding MGP_CASTEiJ_T0079686.1 MGP_CASTEiJ_G0030235.1 mouse_genomes_project 6 116861888 116993514 + MGP_CASTEiJ_P0079686 Pparg protein_coding protein_coding MGP_CASTEiJ_T0079687.1 MGP_CASTEiJ_G0030235.1 mouse_genomes_project 6 116861945 116943608 + MGP_CASTEiJ_P0079687 Pparg protein_coding protein_coding MGP_CASTEiJ_T0079688.1 MGP_CASTEiJ_G0030235.1 mouse_genomes_project 6 116861946 116883389 + Pparg protein_coding retained_intron MGP_CASTEiJ_T0079689.1 MGP_CASTEiJ_G0030235.1 mouse_genomes_project 6 116883264 116966394 + MGP_CASTEiJ_P0079689 Pparg protein_coding protein_coding MGP_CASTEiJ_T0079690.1 MGP_CASTEiJ_G0030235.1 mouse_genomes_project 6 116924286 116993519 + MGP_CASTEiJ_P0079690 Pparg protein_coding protein_coding MGP_CASTEiJ_T0079691.1 MGP_CASTEiJ_G0030235.1 mouse_genomes_project 6 116941629 116993523 + MGP_CASTEiJ_P0079691 Pparg protein_coding unknown_likely_coding MGP_CASTEiJ_T0079692.1 MGP_CASTEiJ_G0030235.1 mouse_genomes_project 6 116942054 116966770 + Pparg protein_coding retained_intron MGP_CASTEiJ_T0008565.1 MGP_CASTEiJ_G0006930.1 mouse_genomes_project 6 152052845 152058176 - Gm43913 lincRNA lincRNA MGP_CASTEiJ_T0101201.1 MGP_CASTEiJ_G0038114.1 mouse_genomes_project 6 118331959 118332081 - Gm22882 snoRNA snoRNA MGP_CASTEiJ_T0079642.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116100498 116319323 + MGP_CASTEiJ_P0079642 Atg7 protein_coding protein_coding MGP_CASTEiJ_T0079643.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116100513 116319321 + MGP_CASTEiJ_P0079643 Atg7 protein_coding protein_coding MGP_CASTEiJ_T0079644.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116100517 116142007 + Atg7 protein_coding retained_intron MGP_CASTEiJ_T0079645.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116100519 116135103 + MGP_CASTEiJ_P0079645 Atg7 protein_coding protein_coding MGP_CASTEiJ_T0079646.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116100523 116317852 + MGP_CASTEiJ_P0079646 Atg7 protein_coding protein_coding MGP_CASTEiJ_T0079647.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116100528 116131124 + MGP_CASTEiJ_P0079647 Atg7 protein_coding protein_coding MGP_CASTEiJ_T0079648.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116100528 116317943 + MGP_CASTEiJ_P0079648 Atg7 protein_coding protein_coding MGP_CASTEiJ_T0079649.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116100530 116317952 + MGP_CASTEiJ_P0079649 Atg7 protein_coding protein_coding MGP_CASTEiJ_T0079650.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116100530 116317946 + MGP_CASTEiJ_P0079650 Atg7 protein_coding protein_coding MGP_CASTEiJ_T0079651.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116100532 116143323 + MGP_CASTEiJ_P0079651 Atg7 protein_coding protein_coding MGP_CASTEiJ_T0079652.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116106915 116141611 + MGP_CASTEiJ_P0079652 Atg7 protein_coding protein_coding MGP_CASTEiJ_T0079653.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116110510 116143306 + MGP_CASTEiJ_P0079653 Atg7 protein_coding protein_coding MGP_CASTEiJ_T0079654.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116116073 116131712 + MGP_CASTEiJ_P0079654 Atg7 protein_coding protein_coding MGP_CASTEiJ_T0079655.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116137248 116161366 + Atg7 protein_coding processed_transcript MGP_CASTEiJ_T0079656.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116140374 116142593 + Atg7 protein_coding retained_intron MGP_CASTEiJ_T0079657.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116182363 116317946 + Atg7 protein_coding processed_transcript MGP_CASTEiJ_T0079658.1 MGP_CASTEiJ_G0030229.1 mouse_genomes_project 6 116314867 116317944 + Atg7 protein_coding processed_transcript MGP_CASTEiJ_T0099970.1 MGP_CASTEiJ_G0036883.1 mouse_genomes_project 6 105018485 105018550 - Gm25656 snRNA snRNA MGP_CASTEiJ_T0080749.1 MGP_CASTEiJ_G0030477.1 mouse_genomes_project 6 136750544 136877709 - MGP_CASTEiJ_P0080749 Lrp6 protein_coding protein_coding MGP_CASTEiJ_T0080750.1 MGP_CASTEiJ_G0030477.1 mouse_genomes_project 6 136754553 136778687 - Lrp6 protein_coding retained_intron MGP_CASTEiJ_T0080751.1 MGP_CASTEiJ_G0030477.1 mouse_genomes_project 6 136758545 136877537 - MGP_CASTEiJ_P0080751 Lrp6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0080752.1 MGP_CASTEiJ_G0030477.1 mouse_genomes_project 6 136765918 136770509 - Lrp6 protein_coding retained_intron MGP_CASTEiJ_T0080753.1 MGP_CASTEiJ_G0030477.1 mouse_genomes_project 6 136767062 136773263 - Lrp6 protein_coding retained_intron MGP_CASTEiJ_T0080754.1 MGP_CASTEiJ_G0030477.1 mouse_genomes_project 6 136820196 136877761 - MGP_CASTEiJ_P0080754 Lrp6 protein_coding protein_coding MGP_CASTEiJ_T0080755.1 MGP_CASTEiJ_G0030477.1 mouse_genomes_project 6 136850887 136851869 - Lrp6 protein_coding retained_intron MGP_CASTEiJ_T0001969.1 MGP_CASTEiJ_G0001890.1 mouse_genomes_project 6 81953574 81955115 - TEC TEC MGP_CASTEiJ_T0004870.1 MGP_CASTEiJ_G0004180.1 mouse_genomes_project 6 86780656 86784169 - Gm44941 antisense antisense MGP_CASTEiJ_T0001941.1 MGP_CASTEiJ_G0001862.1 mouse_genomes_project 6 71725643 71728194 + TEC TEC MGP_CASTEiJ_T0077428.1 MGP_CASTEiJ_G0029747.1 mouse_genomes_project 6 40177196 40186535 - MGP_CASTEiJ_P0077428 Fam131b protein_coding protein_coding MGP_CASTEiJ_T0077429.1 MGP_CASTEiJ_G0029747.1 mouse_genomes_project 6 40180044 40186364 - MGP_CASTEiJ_P0077429 Fam131b protein_coding protein_coding MGP_CASTEiJ_T0080064.1 MGP_CASTEiJ_G0030300.1 mouse_genomes_project 6 123029303 123041871 + MGP_CASTEiJ_P0080064 Pex26 protein_coding protein_coding MGP_CASTEiJ_T0080065.1 MGP_CASTEiJ_G0030300.1 mouse_genomes_project 6 123029303 123041878 + MGP_CASTEiJ_P0080065 Pex26 protein_coding protein_coding MGP_CASTEiJ_T0080066.1 MGP_CASTEiJ_G0030300.1 mouse_genomes_project 6 123029438 123032441 + MGP_CASTEiJ_P0080066 Pex26 protein_coding protein_coding MGP_CASTEiJ_T0080067.1 MGP_CASTEiJ_G0030300.1 mouse_genomes_project 6 123029525 123041871 + MGP_CASTEiJ_P0080067 Pex26 protein_coding protein_coding MGP_CASTEiJ_T0080068.1 MGP_CASTEiJ_G0030300.1 mouse_genomes_project 6 123029534 123044447 + MGP_CASTEiJ_P0080068 Pex26 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0008514.1 MGP_CASTEiJ_G0006897.1 mouse_genomes_project 6 130537842 130550193 - Gm10010 lincRNA lincRNA MGP_CASTEiJ_T0076530.1 MGP_CASTEiJ_G0029560.1 mouse_genomes_project 6 10650720 10654519 - MGP_CASTEiJ_P0076530 2610001J05Rik protein_coding protein_coding MGP_CASTEiJ_T0076531.1 MGP_CASTEiJ_G0029560.1 mouse_genomes_project 6 10652815 10654467 - MGP_CASTEiJ_P0076531 2610001J05Rik protein_coding protein_coding MGP_CASTEiJ_T0076532.1 MGP_CASTEiJ_G0029560.1 mouse_genomes_project 6 10652875 10654466 - MGP_CASTEiJ_P0076532 2610001J05Rik protein_coding protein_coding MGP_CASTEiJ_T0076533.1 MGP_CASTEiJ_G0029560.1 mouse_genomes_project 6 10653016 10654466 - MGP_CASTEiJ_P0076533 2610001J05Rik protein_coding protein_coding MGP_CASTEiJ_T0004890.1 MGP_CASTEiJ_G0004189.1 mouse_genomes_project 6 88969394 88970217 + Gm44264 antisense antisense MGP_CASTEiJ_T0080536.1 MGP_CASTEiJ_G0030401.1 mouse_genomes_project 6 130285969 130364751 - MGP_CASTEiJ_P0080536 Tspan9 protein_coding protein_coding MGP_CASTEiJ_T0080537.1 MGP_CASTEiJ_G0030401.1 mouse_genomes_project 6 130285969 130364867 - MGP_CASTEiJ_P0080537 Tspan9 protein_coding protein_coding MGP_CASTEiJ_T0080538.1 MGP_CASTEiJ_G0030401.1 mouse_genomes_project 6 130289830 130291413 - Tspan9 protein_coding retained_intron MGP_CASTEiJ_T0080539.1 MGP_CASTEiJ_G0030401.1 mouse_genomes_project 6 130290357 130365255 - MGP_CASTEiJ_P0080539 Tspan9 protein_coding protein_coding MGP_CASTEiJ_T0080540.1 MGP_CASTEiJ_G0030401.1 mouse_genomes_project 6 130291026 130481321 - MGP_CASTEiJ_P0080540 Tspan9 protein_coding protein_coding MGP_CASTEiJ_T0080541.1 MGP_CASTEiJ_G0030401.1 mouse_genomes_project 6 130291032 130477273 - MGP_CASTEiJ_P0080541 Tspan9 protein_coding protein_coding MGP_CASTEiJ_T0080542.1 MGP_CASTEiJ_G0030401.1 mouse_genomes_project 6 130291676 130481314 - MGP_CASTEiJ_P0080542 Tspan9 protein_coding protein_coding MGP_CASTEiJ_T0080543.1 MGP_CASTEiJ_G0030401.1 mouse_genomes_project 6 130291761 130458568 - MGP_CASTEiJ_P0080543 Tspan9 protein_coding protein_coding MGP_CASTEiJ_T0080544.1 MGP_CASTEiJ_G0030401.1 mouse_genomes_project 6 130415804 130481355 - Tspan9 protein_coding processed_transcript MGP_CASTEiJ_T0078561.1 MGP_CASTEiJ_G0030021.1 mouse_genomes_project 6 83681511 83704427 - MGP_CASTEiJ_P0078561 Actg2 protein_coding protein_coding MGP_CASTEiJ_T0078562.1 MGP_CASTEiJ_G0030021.1 mouse_genomes_project 6 83681518 83696353 - MGP_CASTEiJ_P0078562 Actg2 protein_coding protein_coding MGP_CASTEiJ_T0078563.1 MGP_CASTEiJ_G0030021.1 mouse_genomes_project 6 83688330 83695260 - Actg2 protein_coding processed_transcript MGP_CASTEiJ_T0078564.1 MGP_CASTEiJ_G0030021.1 mouse_genomes_project 6 83688330 83704385 - MGP_CASTEiJ_P0078564 Actg2 protein_coding protein_coding MGP_CASTEiJ_T0078565.1 MGP_CASTEiJ_G0030021.1 mouse_genomes_project 6 83688471 83695849 - MGP_CASTEiJ_P0078565 Actg2 protein_coding protein_coding MGP_CASTEiJ_T0078566.1 MGP_CASTEiJ_G0030021.1 mouse_genomes_project 6 83689245 83696171 - MGP_CASTEiJ_P0078566 Actg2 protein_coding protein_coding MGP_CASTEiJ_T0001935.1 MGP_CASTEiJ_G0001856.1 mouse_genomes_project 6 71001172 71004176 - TEC TEC MGP_CASTEiJ_T0001937.1 MGP_CASTEiJ_G0001858.1 mouse_genomes_project 6 71108454 71111611 - TEC TEC MGP_CASTEiJ_T0004945.1 MGP_CASTEiJ_G0004230.1 mouse_genomes_project 6 127128165 127169799 - Gm43989 antisense antisense MGP_CASTEiJ_T0004964.1 MGP_CASTEiJ_G0004246.1 mouse_genomes_project 6 137083564 137084516 + Gm44025 antisense antisense MGP_CASTEiJ_T0004992.1 MGP_CASTEiJ_G0004270.1 mouse_genomes_project 6 151094099 151128788 - Far2os2 antisense antisense MGP_CASTEiJ_T0004943.1 MGP_CASTEiJ_G0004228.1 mouse_genomes_project 6 126833073 126840887 + Gm20531 antisense antisense MGP_CASTEiJ_T0004915.1 MGP_CASTEiJ_G0004205.1 mouse_genomes_project 6 109837281 109844000 - Gm44040 antisense antisense MGP_CASTEiJ_T0008282.1 MGP_CASTEiJ_G0006727.1 mouse_genomes_project 6 3075984 3113748 + Gm20619 lincRNA lincRNA MGP_CASTEiJ_T0008283.1 MGP_CASTEiJ_G0006727.1 mouse_genomes_project 6 3076012 3199342 + Gm20619 lincRNA lincRNA MGP_CASTEiJ_T0008284.1 MGP_CASTEiJ_G0006727.1 mouse_genomes_project 6 3076015 3214498 + Gm20619 lincRNA lincRNA MGP_CASTEiJ_T0008285.1 MGP_CASTEiJ_G0006727.1 mouse_genomes_project 6 3076043 3113744 + Gm20619 lincRNA lincRNA MGP_CASTEiJ_T0008286.1 MGP_CASTEiJ_G0006727.1 mouse_genomes_project 6 3133045 3199137 + Gm20619 lincRNA lincRNA MGP_CASTEiJ_T0002637.1 MGP_CASTEiJ_G0002527.1 mouse_genomes_project 6 38977873 38978132 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0078423.1 MGP_CASTEiJ_G0029996.1 mouse_genomes_project 6 83061477 83148244 + MGP_CASTEiJ_P0078423 M1ap protein_coding protein_coding MGP_CASTEiJ_T0078424.1 MGP_CASTEiJ_G0029996.1 mouse_genomes_project 6 83123740 83147998 + MGP_CASTEiJ_P0078424 M1ap protein_coding unknown_likely_coding MGP_CASTEiJ_T0078425.1 MGP_CASTEiJ_G0029996.1 mouse_genomes_project 6 83144381 83148370 + MGP_CASTEiJ_P0078425 M1ap protein_coding protein_coding MGP_CASTEiJ_T0078426.1 MGP_CASTEiJ_G0029996.1 mouse_genomes_project 6 83146304 83147884 + M1ap protein_coding retained_intron MGP_CASTEiJ_T0076487.1 MGP_CASTEiJ_G0029552.1 mouse_genomes_project 6 8666195 8676020 - MGP_CASTEiJ_P0076487 Ndufa4 protein_coding protein_coding MGP_CASTEiJ_T0076488.1 MGP_CASTEiJ_G0029552.1 mouse_genomes_project 6 8669026 8676084 - Ndufa4 protein_coding retained_intron MGP_CASTEiJ_T0077348.1 MGP_CASTEiJ_G0029713.1 mouse_genomes_project 6 38480519 38481515 - MGP_CASTEiJ_P0077348 Tas2r138 protein_coding protein_coding MGP_CASTEiJ_T0014756.1 MGP_CASTEiJ_G0012919.1 mouse_genomes_project 6 25600459 25601717 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077119.1 MGP_CASTEiJ_G0029663.1 mouse_genomes_project 6 32419814 32453126 - MGP_CASTEiJ_P0077119 Wdr91 protein_coding protein_coding MGP_CASTEiJ_T0077120.1 MGP_CASTEiJ_G0029663.1 mouse_genomes_project 6 32419814 32453126 - MGP_CASTEiJ_P0077120 Wdr91 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077121.1 MGP_CASTEiJ_G0029663.1 mouse_genomes_project 6 32445491 32452845 - MGP_CASTEiJ_P0077121 Wdr91 protein_coding protein_coding MGP_CASTEiJ_T0077122.1 MGP_CASTEiJ_G0029663.1 mouse_genomes_project 6 32449061 32452912 - MGP_CASTEiJ_P0077122 Wdr91 protein_coding protein_coding MGP_CASTEiJ_T0077123.1 MGP_CASTEiJ_G0029663.1 mouse_genomes_project 6 32450693 32452813 - MGP_CASTEiJ_P0077123 Wdr91 protein_coding protein_coding MGP_CASTEiJ_T0077124.1 MGP_CASTEiJ_G0029663.1 mouse_genomes_project 6 32450948 32453083 - Wdr91 protein_coding retained_intron MGP_CASTEiJ_T0077125.1 MGP_CASTEiJ_G0029663.1 mouse_genomes_project 6 32451697 32453086 - Wdr91 protein_coding processed_transcript MGP_CASTEiJ_T0077126.1 MGP_CASTEiJ_G0029663.1 mouse_genomes_project 6 32451711 32453092 - Wdr91 protein_coding processed_transcript MGP_CASTEiJ_T0079424.1 MGP_CASTEiJ_G0030191.1 mouse_genomes_project 6 112036904 112995712 + MGP_CASTEiJ_P0079424 Grm7 protein_coding protein_coding MGP_CASTEiJ_T0079425.1 MGP_CASTEiJ_G0030191.1 mouse_genomes_project 6 112036904 112929037 + MGP_CASTEiJ_P0079425 Grm7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079426.1 MGP_CASTEiJ_G0030191.1 mouse_genomes_project 6 112036905 112996874 + MGP_CASTEiJ_P0079426 Grm7 protein_coding protein_coding MGP_CASTEiJ_T0079427.1 MGP_CASTEiJ_G0030191.1 mouse_genomes_project 6 112425791 112824296 + MGP_CASTEiJ_P0079427 Grm7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079428.1 MGP_CASTEiJ_G0030191.1 mouse_genomes_project 6 112928093 112931940 + MGP_CASTEiJ_P0079428 Grm7 protein_coding protein_coding MGP_CASTEiJ_T0079429.1 MGP_CASTEiJ_G0030191.1 mouse_genomes_project 6 112928122 112934293 + MGP_CASTEiJ_P0079429 Grm7 protein_coding protein_coding MGP_CASTEiJ_T0001959.1 MGP_CASTEiJ_G0001880.1 mouse_genomes_project 6 77661409 77665458 - TEC TEC MGP_CASTEiJ_T0010492.1 MGP_CASTEiJ_G0008680.1 mouse_genomes_project 6 108762021 108762147 - Gm27690 miRNA miRNA MGP_CASTEiJ_T0077446.1 MGP_CASTEiJ_G0029752.1 mouse_genomes_project 6 40300322 40306387 + MGP_CASTEiJ_P0077446 Tas2r126 protein_coding protein_coding MGP_CASTEiJ_T0078473.1 MGP_CASTEiJ_G0030004.1 mouse_genomes_project 6 83214859 83216692 + MGP_CASTEiJ_P0078473 Lbx2 protein_coding protein_coding MGP_CASTEiJ_T0078474.1 MGP_CASTEiJ_G0030004.1 mouse_genomes_project 6 83215786 83216545 + Lbx2 protein_coding processed_transcript MGP_CASTEiJ_T0001895.1 MGP_CASTEiJ_G0001816.1 mouse_genomes_project 6 43094181 43096409 + TEC TEC MGP_CASTEiJ_T0101169.1 MGP_CASTEiJ_G0038082.1 mouse_genomes_project 6 51037786 51037908 - Gm24355 snoRNA snoRNA MGP_CASTEiJ_T0004973.1 MGP_CASTEiJ_G0004253.1 mouse_genomes_project 6 141091959 141112020 + Gm30332 antisense antisense MGP_CASTEiJ_T0079212.1 MGP_CASTEiJ_G0030150.1 mouse_genomes_project 6 94454232 95114089 - MGP_CASTEiJ_P0079212 Magi1 protein_coding protein_coding MGP_CASTEiJ_T0079213.1 MGP_CASTEiJ_G0030150.1 mouse_genomes_project 6 94454232 95114089 - MGP_CASTEiJ_P0079213 Magi1 protein_coding protein_coding MGP_CASTEiJ_T0079214.1 MGP_CASTEiJ_G0030150.1 mouse_genomes_project 6 94454232 95114684 - MGP_CASTEiJ_P0079214 Magi1 protein_coding protein_coding MGP_CASTEiJ_T0079215.1 MGP_CASTEiJ_G0030150.1 mouse_genomes_project 6 94456835 94705125 - MGP_CASTEiJ_P0079215 Magi1 protein_coding protein_coding MGP_CASTEiJ_T0079216.1 MGP_CASTEiJ_G0030150.1 mouse_genomes_project 6 94460268 94704989 - MGP_CASTEiJ_P0079216 Magi1 protein_coding protein_coding MGP_CASTEiJ_T0079217.1 MGP_CASTEiJ_G0030150.1 mouse_genomes_project 6 94461827 94704398 - MGP_CASTEiJ_P0079217 Magi1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079218.1 MGP_CASTEiJ_G0030150.1 mouse_genomes_project 6 94462661 94605141 - MGP_CASTEiJ_P0079218 Magi1 protein_coding protein_coding MGP_CASTEiJ_T0079219.1 MGP_CASTEiJ_G0030150.1 mouse_genomes_project 6 94462770 95114662 - MGP_CASTEiJ_P0079219 Magi1 protein_coding protein_coding MGP_CASTEiJ_T0079220.1 MGP_CASTEiJ_G0030150.1 mouse_genomes_project 6 94559347 94703940 - MGP_CASTEiJ_P0079220 Magi1 protein_coding protein_coding MGP_CASTEiJ_T0079221.1 MGP_CASTEiJ_G0030150.1 mouse_genomes_project 6 94571723 94579492 - MGP_CASTEiJ_P0079221 Magi1 protein_coding protein_coding MGP_CASTEiJ_T0079222.1 MGP_CASTEiJ_G0030150.1 mouse_genomes_project 6 94947960 95113792 - Magi1 protein_coding processed_transcript MGP_CASTEiJ_T0001942.1 MGP_CASTEiJ_G0001863.1 mouse_genomes_project 6 72092542 72094102 + TEC TEC MGP_CASTEiJ_T0015089.1 MGP_CASTEiJ_G0013252.1 mouse_genomes_project 6 143921038 143921568 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077838.1 MGP_CASTEiJ_G0029854.1 mouse_genomes_project 6 52318035 52423530 - MGP_CASTEiJ_P0077838 Cpvl protein_coding protein_coding MGP_CASTEiJ_T0077839.1 MGP_CASTEiJ_G0029854.1 mouse_genomes_project 6 52318150 52423521 - MGP_CASTEiJ_P0077839 Cpvl protein_coding protein_coding MGP_CASTEiJ_T0077840.1 MGP_CASTEiJ_G0029854.1 mouse_genomes_project 6 52318150 52423521 - MGP_CASTEiJ_P0077840 Cpvl protein_coding protein_coding MGP_CASTEiJ_T0077344.1 MGP_CASTEiJ_G0029712.1 mouse_genomes_project 6 38439407 38453130 - MGP_CASTEiJ_P0077344 Clec5a protein_coding protein_coding MGP_CASTEiJ_T0077345.1 MGP_CASTEiJ_G0029712.1 mouse_genomes_project 6 38441228 38453148 - Clec5a protein_coding processed_transcript MGP_CASTEiJ_T0077346.1 MGP_CASTEiJ_G0029712.1 mouse_genomes_project 6 38442361 38453122 - MGP_CASTEiJ_P0077346 Clec5a protein_coding protein_coding MGP_CASTEiJ_T0077347.1 MGP_CASTEiJ_G0029712.1 mouse_genomes_project 6 38442471 38453117 - MGP_CASTEiJ_P0077347 Clec5a protein_coding protein_coding MGP_CASTEiJ_T0008462.1 MGP_CASTEiJ_G0006852.1 mouse_genomes_project 6 95826030 95833695 + 4930511E03Rik lincRNA lincRNA MGP_CASTEiJ_T0000045.1 MGP_CASTEiJ_G0000038.1 mouse_genomes_project 6 70234468 70234506 + MGP_CASTEiJ_P0000045 Igkj1 IG_J_gene IG_J_gene MGP_CASTEiJ_T0004808.1 MGP_CASTEiJ_G0004138.1 mouse_genomes_project 6 40232961 40242846 + 2010310C07Rik antisense antisense MGP_CASTEiJ_T0004809.1 MGP_CASTEiJ_G0004138.1 mouse_genomes_project 6 40240243 40243506 + 2010310C07Rik antisense antisense MGP_CASTEiJ_T0015048.1 MGP_CASTEiJ_G0013211.1 mouse_genomes_project 6 130845633 130846827 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080099.1 MGP_CASTEiJ_G0030308.1 mouse_genomes_project 6 124010395 124090748 + MGP_CASTEiJ_P0080099 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077328.1 MGP_CASTEiJ_G0029705.1 mouse_genomes_project 6 38313325 38330093 + MGP_CASTEiJ_P0077328 Wee2 protein_coding protein_coding MGP_CASTEiJ_T0077329.1 MGP_CASTEiJ_G0029705.1 mouse_genomes_project 6 38317042 38342556 + MGP_CASTEiJ_P0077329 Wee2 protein_coding protein_coding MGP_CASTEiJ_T0077330.1 MGP_CASTEiJ_G0029705.1 mouse_genomes_project 6 38317117 38318349 + MGP_CASTEiJ_P0077330 Wee2 protein_coding protein_coding MGP_CASTEiJ_T0078245.1 MGP_CASTEiJ_G0029955.1 mouse_genomes_project 6 71523882 71572072 + MGP_CASTEiJ_P0078245 Polr1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078246.1 MGP_CASTEiJ_G0029955.1 mouse_genomes_project 6 71523890 71593905 + MGP_CASTEiJ_P0078246 Polr1a protein_coding protein_coding MGP_CASTEiJ_T0078247.1 MGP_CASTEiJ_G0029955.1 mouse_genomes_project 6 71523898 71536229 + Polr1a protein_coding retained_intron MGP_CASTEiJ_T0078248.1 MGP_CASTEiJ_G0029955.1 mouse_genomes_project 6 71527186 71571957 + Polr1a protein_coding retained_intron MGP_CASTEiJ_T0078249.1 MGP_CASTEiJ_G0029955.1 mouse_genomes_project 6 71540907 71541524 + Polr1a protein_coding retained_intron MGP_CASTEiJ_T0078250.1 MGP_CASTEiJ_G0029955.1 mouse_genomes_project 6 71548320 71548912 + Polr1a protein_coding retained_intron MGP_CASTEiJ_T0078251.1 MGP_CASTEiJ_G0029955.1 mouse_genomes_project 6 71553106 71558488 + Polr1a protein_coding processed_transcript MGP_CASTEiJ_T0078252.1 MGP_CASTEiJ_G0029955.1 mouse_genomes_project 6 71565285 71571758 + MGP_CASTEiJ_P0078252 Polr1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078253.1 MGP_CASTEiJ_G0029955.1 mouse_genomes_project 6 71565286 71566680 + Polr1a protein_coding retained_intron MGP_CASTEiJ_T0078254.1 MGP_CASTEiJ_G0029955.1 mouse_genomes_project 6 71573136 71596370 + MGP_CASTEiJ_P0078254 Polr1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0002012.1 MGP_CASTEiJ_G0001933.1 mouse_genomes_project 6 92066263 92067464 + TEC TEC MGP_CASTEiJ_T0000267.1 MGP_CASTEiJ_G0000216.1 mouse_genomes_project 6 67401628 67402104 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0078262.1 MGP_CASTEiJ_G0029958.1 mouse_genomes_project 6 71949334 71958753 + MGP_CASTEiJ_P0078262 Sftpb protein_coding protein_coding MGP_CASTEiJ_T0078263.1 MGP_CASTEiJ_G0029958.1 mouse_genomes_project 6 71949344 71958749 + MGP_CASTEiJ_P0078263 Sftpb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078264.1 MGP_CASTEiJ_G0029958.1 mouse_genomes_project 6 71949349 71957364 + MGP_CASTEiJ_P0078264 Sftpb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078265.1 MGP_CASTEiJ_G0029958.1 mouse_genomes_project 6 71949349 71957364 + MGP_CASTEiJ_P0078265 Sftpb protein_coding protein_coding MGP_CASTEiJ_T0078266.1 MGP_CASTEiJ_G0029958.1 mouse_genomes_project 6 71950823 71958468 + Sftpb protein_coding retained_intron MGP_CASTEiJ_T0008323.1 MGP_CASTEiJ_G0006752.1 mouse_genomes_project 6 28482695 28482997 - Gm13834 lincRNA lincRNA MGP_CASTEiJ_T0014954.1 MGP_CASTEiJ_G0013117.1 mouse_genomes_project 6 98804706 98804958 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079572.1 MGP_CASTEiJ_G0030215.1 mouse_genomes_project 6 115012231 115020470 - MGP_CASTEiJ_P0079572 Prrt3 protein_coding protein_coding MGP_CASTEiJ_T0079573.1 MGP_CASTEiJ_G0030215.1 mouse_genomes_project 6 115012515 115020518 - MGP_CASTEiJ_P0079573 Prrt3 protein_coding protein_coding MGP_CASTEiJ_T0079574.1 MGP_CASTEiJ_G0030215.1 mouse_genomes_project 6 115012685 115020405 - MGP_CASTEiJ_P0079574 Prrt3 protein_coding protein_coding MGP_CASTEiJ_T0079575.1 MGP_CASTEiJ_G0030215.1 mouse_genomes_project 6 115014858 115020474 - MGP_CASTEiJ_P0079575 Prrt3 protein_coding protein_coding MGP_CASTEiJ_T0079576.1 MGP_CASTEiJ_G0030215.1 mouse_genomes_project 6 115014890 115020480 - MGP_CASTEiJ_P0079576 Prrt3 protein_coding protein_coding MGP_CASTEiJ_T0080692.1 MGP_CASTEiJ_G0030444.1 mouse_genomes_project 6 133748603 133757360 - MGP_CASTEiJ_P0080692 Magohb protein_coding protein_coding MGP_CASTEiJ_T0080693.1 MGP_CASTEiJ_G0030444.1 mouse_genomes_project 6 133748702 133750063 - Magohb protein_coding retained_intron MGP_CASTEiJ_T0080694.1 MGP_CASTEiJ_G0030444.1 mouse_genomes_project 6 133748712 133757326 - MGP_CASTEiJ_P0080694 Magohb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080695.1 MGP_CASTEiJ_G0030444.1 mouse_genomes_project 6 133748854 133753871 - Magohb protein_coding retained_intron MGP_CASTEiJ_T0080696.1 MGP_CASTEiJ_G0030444.1 mouse_genomes_project 6 133748890 133757346 - MGP_CASTEiJ_P0080696 Magohb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080697.1 MGP_CASTEiJ_G0030444.1 mouse_genomes_project 6 133752362 133757346 - MGP_CASTEiJ_P0080697 Magohb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011325.1 MGP_CASTEiJ_G0009513.1 mouse_genomes_project 6 83889400 83889861 + Gm27631 misc_RNA misc_RNA MGP_CASTEiJ_T0014995.1 MGP_CASTEiJ_G0013158.1 mouse_genomes_project 6 116243164 116243552 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002044.1 MGP_CASTEiJ_G0001965.1 mouse_genomes_project 6 104797327 104798821 + TEC TEC MGP_CASTEiJ_T0078267.1 MGP_CASTEiJ_G0029959.1 mouse_genomes_project 6 71962831 71989882 - MGP_CASTEiJ_P0078267 Usp39 protein_coding protein_coding MGP_CASTEiJ_T0078268.1 MGP_CASTEiJ_G0029959.1 mouse_genomes_project 6 71965794 71978168 - Usp39 protein_coding retained_intron MGP_CASTEiJ_T0078269.1 MGP_CASTEiJ_G0029959.1 mouse_genomes_project 6 71981062 71987825 - MGP_CASTEiJ_P0078269 Usp39 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079091.1 MGP_CASTEiJ_G0030128.1 mouse_genomes_project 6 91275283 91335380 - MGP_CASTEiJ_P0079091 Iqsec1 protein_coding protein_coding MGP_CASTEiJ_T0079092.1 MGP_CASTEiJ_G0030128.1 mouse_genomes_project 6 91278834 91281515 - Iqsec1 protein_coding retained_intron MGP_CASTEiJ_T0079093.1 MGP_CASTEiJ_G0030128.1 mouse_genomes_project 6 91278834 91432083 - MGP_CASTEiJ_P0079093 Iqsec1 protein_coding protein_coding MGP_CASTEiJ_T0079094.1 MGP_CASTEiJ_G0030128.1 mouse_genomes_project 6 91281854 91287852 - Iqsec1 protein_coding processed_transcript MGP_CASTEiJ_T0079095.1 MGP_CASTEiJ_G0030128.1 mouse_genomes_project 6 91282021 91287200 - Iqsec1 protein_coding processed_transcript MGP_CASTEiJ_T0079096.1 MGP_CASTEiJ_G0030128.1 mouse_genomes_project 6 91308933 91313760 - Iqsec1 protein_coding processed_transcript MGP_CASTEiJ_T0079097.1 MGP_CASTEiJ_G0030128.1 mouse_genomes_project 6 91309647 91385946 - MGP_CASTEiJ_P0079097 Iqsec1 protein_coding protein_coding MGP_CASTEiJ_T0079098.1 MGP_CASTEiJ_G0030128.1 mouse_genomes_project 6 91309777 91355655 - Iqsec1 protein_coding processed_transcript MGP_CASTEiJ_T0079099.1 MGP_CASTEiJ_G0030128.1 mouse_genomes_project 6 91313662 91379382 - Iqsec1 protein_coding processed_transcript MGP_CASTEiJ_T0077297.1 MGP_CASTEiJ_G0029699.1 mouse_genomes_project 6 37412252 37424030 + MGP_CASTEiJ_P0077297 Ndufb2 protein_coding protein_coding MGP_CASTEiJ_T0077298.1 MGP_CASTEiJ_G0029699.1 mouse_genomes_project 6 37412261 37420122 + MGP_CASTEiJ_P0077298 Ndufb2 protein_coding protein_coding MGP_CASTEiJ_T0077299.1 MGP_CASTEiJ_G0029699.1 mouse_genomes_project 6 37412263 37420073 + Ndufb2 protein_coding processed_transcript MGP_CASTEiJ_T0077300.1 MGP_CASTEiJ_G0029699.1 mouse_genomes_project 6 37412266 37417459 + Ndufb2 protein_coding retained_intron MGP_CASTEiJ_T0077301.1 MGP_CASTEiJ_G0029699.1 mouse_genomes_project 6 37417975 37419944 + Ndufb2 protein_coding retained_intron MGP_CASTEiJ_T0077302.1 MGP_CASTEiJ_G0029699.1 mouse_genomes_project 6 37422440 37423961 + Ndufb2 protein_coding processed_transcript MGP_CASTEiJ_T0014934.1 MGP_CASTEiJ_G0013097.1 mouse_genomes_project 6 92084308 92086113 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001956.1 MGP_CASTEiJ_G0001877.1 mouse_genomes_project 6 77448740 77453109 - TEC TEC MGP_CASTEiJ_T0002002.1 MGP_CASTEiJ_G0001923.1 mouse_genomes_project 6 89278905 89281739 + TEC TEC MGP_CASTEiJ_T0008499.1 MGP_CASTEiJ_G0006882.1 mouse_genomes_project 6 119887898 119890486 + Gm30557 lincRNA lincRNA MGP_CASTEiJ_T0077699.1 MGP_CASTEiJ_G0029821.1 mouse_genomes_project 6 47472142 47494870 + MGP_CASTEiJ_P0077699 Ccdc126 protein_coding protein_coding MGP_CASTEiJ_T0077700.1 MGP_CASTEiJ_G0029821.1 mouse_genomes_project 6 47472175 47494893 + MGP_CASTEiJ_P0077700 Ccdc126 protein_coding protein_coding MGP_CASTEiJ_T0002606.1 MGP_CASTEiJ_G0002501.1 mouse_genomes_project 6 39084053 39084547 + MGP_CASTEiJ_P0002606 Trbv21 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002607.1 MGP_CASTEiJ_G0002501.1 mouse_genomes_project 6 39084259 39084549 + MGP_CASTEiJ_P0002607 Trbv21 TR_V_gene TR_V_gene MGP_CASTEiJ_T0001854.1 MGP_CASTEiJ_G0001775.1 mouse_genomes_project 6 4647176 4649046 + TEC TEC MGP_CASTEiJ_T0014914.1 MGP_CASTEiJ_G0013077.1 mouse_genomes_project 6 83770657 83771552 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004934.1 MGP_CASTEiJ_G0004219.1 mouse_genomes_project 6 117646076 117666479 + Gm20404 antisense antisense MGP_CASTEiJ_T0002590.1 MGP_CASTEiJ_G0002486.1 mouse_genomes_project 6 38917459 38918115 + MGP_CASTEiJ_P0002590 Trbv2 TR_V_gene TR_V_gene MGP_CASTEiJ_T0015042.1 MGP_CASTEiJ_G0013205.1 mouse_genomes_project 6 129536477 129536924 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078819.1 MGP_CASTEiJ_G0030071.1 mouse_genomes_project 6 87163235 87198084 - MGP_CASTEiJ_P0078819 Anxa4 protein_coding protein_coding MGP_CASTEiJ_T0078820.1 MGP_CASTEiJ_G0030071.1 mouse_genomes_project 6 87163236 87226405 - MGP_CASTEiJ_P0078820 Anxa4 protein_coding protein_coding MGP_CASTEiJ_T0078821.1 MGP_CASTEiJ_G0030071.1 mouse_genomes_project 6 87163242 87197998 - MGP_CASTEiJ_P0078821 Anxa4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078822.1 MGP_CASTEiJ_G0030071.1 mouse_genomes_project 6 87164048 87171407 - Anxa4 protein_coding retained_intron MGP_CASTEiJ_T0078823.1 MGP_CASTEiJ_G0030071.1 mouse_genomes_project 6 87164120 87192103 - MGP_CASTEiJ_P0078823 Anxa4 protein_coding protein_coding MGP_CASTEiJ_T0078824.1 MGP_CASTEiJ_G0030071.1 mouse_genomes_project 6 87168271 87197981 - MGP_CASTEiJ_P0078824 Anxa4 protein_coding protein_coding MGP_CASTEiJ_T0078825.1 MGP_CASTEiJ_G0030071.1 mouse_genomes_project 6 87168278 87226385 - MGP_CASTEiJ_P0078825 Anxa4 protein_coding protein_coding MGP_CASTEiJ_T0078826.1 MGP_CASTEiJ_G0030071.1 mouse_genomes_project 6 87169498 87226385 - MGP_CASTEiJ_P0078826 Anxa4 protein_coding protein_coding MGP_CASTEiJ_T0078827.1 MGP_CASTEiJ_G0030071.1 mouse_genomes_project 6 87175372 87198084 - Anxa4 protein_coding retained_intron MGP_CASTEiJ_T0077366.1 MGP_CASTEiJ_G0029724.1 mouse_genomes_project 6 39245587 39249824 + MGP_CASTEiJ_P0077366 Try10 protein_coding protein_coding MGP_CASTEiJ_T0077445.1 MGP_CASTEiJ_G0029751.1 mouse_genomes_project 6 40268851 40269944 + MGP_CASTEiJ_P0077445 Tas2r135 protein_coding protein_coding MGP_CASTEiJ_T0002103.1 MGP_CASTEiJ_G0002023.1 mouse_genomes_project 6 144138239 144142067 + TEC TEC MGP_CASTEiJ_T0014814.1 MGP_CASTEiJ_G0012977.1 mouse_genomes_project 6 49215504 49215742 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099972.1 MGP_CASTEiJ_G0036885.1 mouse_genomes_project 6 113995867 113995970 + Gm27944 snRNA snRNA MGP_CASTEiJ_T0004804.1 MGP_CASTEiJ_G0004134.1 mouse_genomes_project 6 37721639 37722079 - Gm26833 antisense antisense MGP_CASTEiJ_T0079245.1 MGP_CASTEiJ_G0030156.1 mouse_genomes_project 6 97004312 97556756 + MGP_CASTEiJ_P0079245 Fam19a1 protein_coding protein_coding MGP_CASTEiJ_T0079246.1 MGP_CASTEiJ_G0030156.1 mouse_genomes_project 6 97004400 97022946 + Fam19a1 protein_coding processed_transcript MGP_CASTEiJ_T0079247.1 MGP_CASTEiJ_G0030156.1 mouse_genomes_project 6 97005753 97007017 + Fam19a1 protein_coding processed_transcript MGP_CASTEiJ_T0079248.1 MGP_CASTEiJ_G0030156.1 mouse_genomes_project 6 97006410 97556028 + MGP_CASTEiJ_P0079248 Fam19a1 protein_coding protein_coding MGP_CASTEiJ_T0077382.1 MGP_CASTEiJ_G0029733.1 mouse_genomes_project 6 39530593 39531881 + MGP_CASTEiJ_P0077382 1700034O15Rik protein_coding protein_coding MGP_CASTEiJ_T0078866.1 MGP_CASTEiJ_G0030079.1 mouse_genomes_project 6 87845439 87852524 - MGP_CASTEiJ_P0078866 Gkn3 protein_coding protein_coding MGP_CASTEiJ_T0008496.1 MGP_CASTEiJ_G0006879.1 mouse_genomes_project 6 119220338 119268977 - lincRNA lincRNA MGP_CASTEiJ_T0004982.1 MGP_CASTEiJ_G0004261.1 mouse_genomes_project 6 147678683 147719628 + Sox5os4 antisense antisense MGP_CASTEiJ_T0080262.1 MGP_CASTEiJ_G0030348.1 mouse_genomes_project 6 126862869 126866451 - Eno2 protein_coding retained_intron MGP_CASTEiJ_T0080263.1 MGP_CASTEiJ_G0030348.1 mouse_genomes_project 6 126862871 126873723 - MGP_CASTEiJ_P0080263 Eno2 protein_coding protein_coding MGP_CASTEiJ_T0080264.1 MGP_CASTEiJ_G0030348.1 mouse_genomes_project 6 126862871 126873671 - MGP_CASTEiJ_P0080264 Eno2 protein_coding protein_coding MGP_CASTEiJ_T0080265.1 MGP_CASTEiJ_G0030348.1 mouse_genomes_project 6 126863181 126872389 - Eno2 protein_coding retained_intron MGP_CASTEiJ_T0080266.1 MGP_CASTEiJ_G0030348.1 mouse_genomes_project 6 126863721 126873570 - MGP_CASTEiJ_P0080266 Eno2 protein_coding protein_coding MGP_CASTEiJ_T0080267.1 MGP_CASTEiJ_G0030348.1 mouse_genomes_project 6 126863954 126866137 - Eno2 protein_coding retained_intron MGP_CASTEiJ_T0080268.1 MGP_CASTEiJ_G0030348.1 mouse_genomes_project 6 126864013 126866173 - Eno2 protein_coding retained_intron MGP_CASTEiJ_T0080269.1 MGP_CASTEiJ_G0030348.1 mouse_genomes_project 6 126865507 126866760 - Eno2 protein_coding processed_transcript MGP_CASTEiJ_T0080270.1 MGP_CASTEiJ_G0030348.1 mouse_genomes_project 6 126866605 126872382 - MGP_CASTEiJ_P0080270 Eno2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080271.1 MGP_CASTEiJ_G0030348.1 mouse_genomes_project 6 126866708 126872428 - MGP_CASTEiJ_P0080271 Eno2 protein_coding protein_coding MGP_CASTEiJ_T0080272.1 MGP_CASTEiJ_G0030348.1 mouse_genomes_project 6 126870192 126873534 - MGP_CASTEiJ_P0080272 Eno2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080273.1 MGP_CASTEiJ_G0030348.1 mouse_genomes_project 6 126870273 126872383 - MGP_CASTEiJ_P0080273 Eno2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080274.1 MGP_CASTEiJ_G0030348.1 mouse_genomes_project 6 126870336 126873600 - MGP_CASTEiJ_P0080274 Eno2 protein_coding protein_coding MGP_CASTEiJ_T0080275.1 MGP_CASTEiJ_G0030348.1 mouse_genomes_project 6 126870821 126872389 - Eno2 protein_coding retained_intron MGP_CASTEiJ_T0080276.1 MGP_CASTEiJ_G0030348.1 mouse_genomes_project 6 126870999 126873566 - Eno2 protein_coding retained_intron MGP_CASTEiJ_T0080277.1 MGP_CASTEiJ_G0030348.1 mouse_genomes_project 6 126871759 126873536 - MGP_CASTEiJ_P0080277 Eno2 protein_coding protein_coding MGP_CASTEiJ_T0001842.1 MGP_CASTEiJ_G0001763.1 mouse_genomes_project 6 1230115 1231908 + TEC TEC MGP_CASTEiJ_T0011342.1 MGP_CASTEiJ_G0009530.1 mouse_genomes_project 6 144809154 144809393 - Gm23775 misc_RNA misc_RNA MGP_CASTEiJ_T0000180.1 MGP_CASTEiJ_G0000136.1 mouse_genomes_project 6 68462650 68463127 - MGP_CASTEiJ_P0000180 Gm42543 IG_V_gene IG_V_gene MGP_CASTEiJ_T0002120.1 MGP_CASTEiJ_G0002040.1 mouse_genomes_project 6 152198200 152202278 - TEC TEC MGP_CASTEiJ_T0015050.1 MGP_CASTEiJ_G0013213.1 mouse_genomes_project 6 131331614 131332303 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014809.1 MGP_CASTEiJ_G0012972.1 mouse_genomes_project 6 47587446 47588270 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078937.1 MGP_CASTEiJ_G0030095.1 mouse_genomes_project 6 88702863 88715999 + MGP_CASTEiJ_P0078937 Gata2 protein_coding protein_coding MGP_CASTEiJ_T0078938.1 MGP_CASTEiJ_G0030095.1 mouse_genomes_project 6 88707314 88715997 + MGP_CASTEiJ_P0078938 Gata2 protein_coding protein_coding MGP_CASTEiJ_T0078939.1 MGP_CASTEiJ_G0030095.1 mouse_genomes_project 6 88707314 88708640 + MGP_CASTEiJ_P0078939 Gata2 protein_coding protein_coding MGP_CASTEiJ_T0078940.1 MGP_CASTEiJ_G0030095.1 mouse_genomes_project 6 88709895 88711618 + Gata2 protein_coding retained_intron MGP_CASTEiJ_T0078941.1 MGP_CASTEiJ_G0030095.1 mouse_genomes_project 6 88713411 88714738 + Gata2 protein_coding retained_intron MGP_CASTEiJ_T0098628.1 MGP_CASTEiJ_G0035559.1 mouse_genomes_project 6 27763704 27763818 + n-R5s161 rRNA rRNA MGP_CASTEiJ_T0014713.1 MGP_CASTEiJ_G0012876.1 mouse_genomes_project 6 4266183 4266514 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080333.1 MGP_CASTEiJ_G0030360.1 mouse_genomes_project 6 127048359 127056241 + protein_coding retained_intron MGP_CASTEiJ_T0080334.1 MGP_CASTEiJ_G0030360.1 mouse_genomes_project 6 127048377 127052790 + MGP_CASTEiJ_P0080334 protein_coding unknown_likely_coding MGP_CASTEiJ_T0080335.1 MGP_CASTEiJ_G0030360.1 mouse_genomes_project 6 127048378 127051298 + protein_coding retained_intron MGP_CASTEiJ_T0080336.1 MGP_CASTEiJ_G0030360.1 mouse_genomes_project 6 127048378 127049662 + protein_coding retained_intron MGP_CASTEiJ_T0080337.1 MGP_CASTEiJ_G0030360.1 mouse_genomes_project 6 127048398 127051292 + MGP_CASTEiJ_P0080337 protein_coding protein_coding MGP_CASTEiJ_T0080338.1 MGP_CASTEiJ_G0030360.1 mouse_genomes_project 6 127048883 127051284 + MGP_CASTEiJ_P0080338 protein_coding protein_coding MGP_CASTEiJ_T0080339.1 MGP_CASTEiJ_G0030360.1 mouse_genomes_project 6 127049597 127052206 + protein_coding retained_intron MGP_CASTEiJ_T0001951.1 MGP_CASTEiJ_G0001872.1 mouse_genomes_project 6 77225419 77226284 - TEC TEC MGP_CASTEiJ_T0076425.1 MGP_CASTEiJ_G0029537.1 mouse_genomes_project 6 3697658 3702834 + MGP_CASTEiJ_P0076425 Dlx6 protein_coding protein_coding MGP_CASTEiJ_T0076426.1 MGP_CASTEiJ_G0029537.1 mouse_genomes_project 6 3697658 3701684 + MGP_CASTEiJ_P0076426 Dlx6 protein_coding protein_coding MGP_CASTEiJ_T0076427.1 MGP_CASTEiJ_G0029537.1 mouse_genomes_project 6 3698121 3701684 + MGP_CASTEiJ_P0076427 Dlx6 protein_coding protein_coding MGP_CASTEiJ_T0076428.1 MGP_CASTEiJ_G0029537.1 mouse_genomes_project 6 3698122 3699772 + Dlx6 protein_coding retained_intron MGP_CASTEiJ_T0005478.1 MGP_CASTEiJ_G0004623.1 mouse_genomes_project 6 87284856 87285898 - 2610306M01Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0014979.1 MGP_CASTEiJ_G0013142.1 mouse_genomes_project 6 110536622 110537209 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080802.1 MGP_CASTEiJ_G0030487.1 mouse_genomes_project 6 137483244 137505093 - MGP_CASTEiJ_P0080802 Gprc5d protein_coding protein_coding MGP_CASTEiJ_T0080803.1 MGP_CASTEiJ_G0030487.1 mouse_genomes_project 6 137483244 137505056 - MGP_CASTEiJ_P0080803 Gprc5d protein_coding protein_coding MGP_CASTEiJ_T0011296.1 MGP_CASTEiJ_G0009484.1 mouse_genomes_project 6 14621227 14621405 + Gm27365 misc_RNA misc_RNA MGP_CASTEiJ_T0002089.1 MGP_CASTEiJ_G0002009.1 mouse_genomes_project 6 136940929 136941671 + TEC TEC MGP_CASTEiJ_T0017524.1 MGP_CASTEiJ_G0014950.1 mouse_genomes_project 6 52727835 52895586 - 9130019P16Rik processed_transcript antisense MGP_CASTEiJ_T0017525.1 MGP_CASTEiJ_G0014950.1 mouse_genomes_project 6 52760251 52786019 - 9130019P16Rik processed_transcript lincRNA MGP_CASTEiJ_T0017526.1 MGP_CASTEiJ_G0014950.1 mouse_genomes_project 6 52889753 52894920 - 9130019P16Rik processed_transcript lincRNA MGP_CASTEiJ_T0000309.1 MGP_CASTEiJ_G0000258.1 mouse_genomes_project 6 6854896 6854965 + mt-Ts1 Mt_tRNA Mt_tRNA MGP_CASTEiJ_T0000299.1 MGP_CASTEiJ_G0000248.1 mouse_genomes_project 6 70057602 70057903 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0079293.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99885047 100134981 - MGP_CASTEiJ_P0079293 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079294.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99885396 100242022 - MGP_CASTEiJ_P0079294 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079295.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99885400 100420189 - MGP_CASTEiJ_P0079295 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079296.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99885473 99889843 - Foxp1 protein_coding processed_transcript MGP_CASTEiJ_T0079297.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99889239 100507821 - MGP_CASTEiJ_P0079297 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079298.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99890147 99991680 - MGP_CASTEiJ_P0079298 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079299.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99890147 100134981 - MGP_CASTEiJ_P0079299 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079300.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99890147 100134981 - MGP_CASTEiJ_P0079300 Foxp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079301.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99890147 100420189 - MGP_CASTEiJ_P0079301 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079302.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99890147 100420189 - MGP_CASTEiJ_P0079302 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079303.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99890147 100134981 - MGP_CASTEiJ_P0079303 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079304.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99890147 100134981 - MGP_CASTEiJ_P0079304 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079305.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99890147 100134981 - MGP_CASTEiJ_P0079305 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079306.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99890147 100134981 - MGP_CASTEiJ_P0079306 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079307.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99890228 99895652 - Foxp1 protein_coding retained_intron MGP_CASTEiJ_T0079308.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99905701 99991734 - MGP_CASTEiJ_P0079308 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079309.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99912380 99966268 - Foxp1 protein_coding retained_intron MGP_CASTEiJ_T0079310.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99965685 99992362 - MGP_CASTEiJ_P0079310 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079311.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99965980 100010472 - MGP_CASTEiJ_P0079311 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079312.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99969271 99991687 - Foxp1 protein_coding processed_transcript MGP_CASTEiJ_T0079313.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99972509 100065424 - MGP_CASTEiJ_P0079313 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079314.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99972520 100010455 - MGP_CASTEiJ_P0079314 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079315.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 99980018 99991412 - MGP_CASTEiJ_P0079315 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079316.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 100043120 100223942 - MGP_CASTEiJ_P0079316 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079317.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 100124157 100242022 - Foxp1 protein_coding processed_transcript MGP_CASTEiJ_T0079318.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 100133907 100242039 - Foxp1 protein_coding retained_intron MGP_CASTEiJ_T0079319.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 100133907 100242039 - Foxp1 protein_coding retained_intron MGP_CASTEiJ_T0079320.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 100134891 100507986 - MGP_CASTEiJ_P0079320 Foxp1 protein_coding protein_coding MGP_CASTEiJ_T0079322.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 100235851 100510399 - Foxp1 protein_coding processed_transcript MGP_CASTEiJ_T0079323.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 100286843 100421283 - Foxp1 protein_coding processed_transcript MGP_CASTEiJ_T0079326.1 MGP_CASTEiJ_G0030167.1 mouse_genomes_project 6 100420079 100510473 - Foxp1 protein_coding processed_transcript MGP_CASTEiJ_T0076526.1 MGP_CASTEiJ_G0029559.1 mouse_genomes_project 6 10610628 10616098 - MGP_CASTEiJ_P0076526 Gpr85 protein_coding protein_coding MGP_CASTEiJ_T0076527.1 MGP_CASTEiJ_G0029559.1 mouse_genomes_project 6 10611244 10614609 - MGP_CASTEiJ_P0076527 Gpr85 protein_coding protein_coding MGP_CASTEiJ_T0076528.1 MGP_CASTEiJ_G0029559.1 mouse_genomes_project 6 10611253 10613418 - MGP_CASTEiJ_P0076528 Gpr85 protein_coding protein_coding MGP_CASTEiJ_T0076529.1 MGP_CASTEiJ_G0029559.1 mouse_genomes_project 6 10614250 10615652 - Gpr85 protein_coding processed_transcript MGP_CASTEiJ_T0079191.1 MGP_CASTEiJ_G0030144.1 mouse_genomes_project 6 92877914 92908467 - MGP_CASTEiJ_P0079191 Rbsn protein_coding protein_coding MGP_CASTEiJ_T0079192.1 MGP_CASTEiJ_G0030144.1 mouse_genomes_project 6 92881069 92892009 - MGP_CASTEiJ_P0079192 Rbsn protein_coding protein_coding MGP_CASTEiJ_T0079193.1 MGP_CASTEiJ_G0030144.1 mouse_genomes_project 6 92881611 92893918 - Rbsn protein_coding processed_transcript MGP_CASTEiJ_T0079194.1 MGP_CASTEiJ_G0030144.1 mouse_genomes_project 6 92881974 92885316 - Rbsn protein_coding retained_intron MGP_CASTEiJ_T0079195.1 MGP_CASTEiJ_G0030144.1 mouse_genomes_project 6 92899397 92908391 - MGP_CASTEiJ_P0079195 Rbsn protein_coding protein_coding MGP_CASTEiJ_T0079196.1 MGP_CASTEiJ_G0030144.1 mouse_genomes_project 6 92903872 92908111 - MGP_CASTEiJ_P0079196 Rbsn protein_coding protein_coding MGP_CASTEiJ_T0077004.1 MGP_CASTEiJ_G0029644.1 mouse_genomes_project 6 28293787 28300265 - Tsga13 protein_coding processed_transcript MGP_CASTEiJ_T0077005.1 MGP_CASTEiJ_G0029644.1 mouse_genomes_project 6 28293787 28312252 - MGP_CASTEiJ_P0077005 Tsga13 protein_coding protein_coding MGP_CASTEiJ_T0077006.1 MGP_CASTEiJ_G0029644.1 mouse_genomes_project 6 28294021 28297292 - Tsga13 protein_coding retained_intron MGP_CASTEiJ_T0078586.1 MGP_CASTEiJ_G0030028.1 mouse_genomes_project 6 83960831 83968711 - MGP_CASTEiJ_P0078586 Tex261 protein_coding protein_coding MGP_CASTEiJ_T0078587.1 MGP_CASTEiJ_G0030028.1 mouse_genomes_project 6 83962352 83968688 - Tex261 protein_coding retained_intron MGP_CASTEiJ_T0078588.1 MGP_CASTEiJ_G0030028.1 mouse_genomes_project 6 83963123 83964412 - Tex261 protein_coding retained_intron MGP_CASTEiJ_T0078589.1 MGP_CASTEiJ_G0030028.1 mouse_genomes_project 6 83965524 83968656 - Tex261 protein_coding retained_intron MGP_CASTEiJ_T0077799.1 MGP_CASTEiJ_G0029845.1 mouse_genomes_project 6 50597431 50601180 - MGP_CASTEiJ_P0077799 Hoxa10 protein_coding protein_coding MGP_CASTEiJ_T0077800.1 MGP_CASTEiJ_G0029845.1 mouse_genomes_project 6 50597433 50599562 - Hoxa10 protein_coding processed_transcript MGP_CASTEiJ_T0077801.1 MGP_CASTEiJ_G0029845.1 mouse_genomes_project 6 50598159 50607072 - MGP_CASTEiJ_P0077801 Hoxa10 protein_coding protein_coding MGP_CASTEiJ_T0077802.1 MGP_CASTEiJ_G0029845.1 mouse_genomes_project 6 50598319 50607013 - Hoxa10 protein_coding processed_transcript MGP_CASTEiJ_T0014863.1 MGP_CASTEiJ_G0013026.1 mouse_genomes_project 6 65778681 65778907 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004967.1 MGP_CASTEiJ_G0004249.1 mouse_genomes_project 6 137679552 137740079 + Gm44276 antisense antisense MGP_CASTEiJ_T0001990.1 MGP_CASTEiJ_G0001911.1 mouse_genomes_project 6 87792260 87794440 - TEC TEC MGP_CASTEiJ_T0015088.1 MGP_CASTEiJ_G0013251.1 mouse_genomes_project 6 143785537 143785653 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076375.1 MGP_CASTEiJ_G0029528.1 mouse_genomes_project 6 1656081 1933851 + MGP_CASTEiJ_P0076375 Ppp1r9a protein_coding protein_coding MGP_CASTEiJ_T0076376.1 MGP_CASTEiJ_G0029528.1 mouse_genomes_project 6 1656138 1843710 + MGP_CASTEiJ_P0076376 Ppp1r9a protein_coding protein_coding MGP_CASTEiJ_T0076377.1 MGP_CASTEiJ_G0029528.1 mouse_genomes_project 6 1656182 1934482 + MGP_CASTEiJ_P0076377 Ppp1r9a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076378.1 MGP_CASTEiJ_G0029528.1 mouse_genomes_project 6 1659108 1939888 + MGP_CASTEiJ_P0076378 Ppp1r9a protein_coding protein_coding MGP_CASTEiJ_T0076379.1 MGP_CASTEiJ_G0029528.1 mouse_genomes_project 6 1659161 1774904 + MGP_CASTEiJ_P0076379 Ppp1r9a protein_coding protein_coding MGP_CASTEiJ_T0076380.1 MGP_CASTEiJ_G0029528.1 mouse_genomes_project 6 1659220 1938745 + Ppp1r9a protein_coding retained_intron MGP_CASTEiJ_T0076381.1 MGP_CASTEiJ_G0029528.1 mouse_genomes_project 6 1659576 1662587 + MGP_CASTEiJ_P0076381 Ppp1r9a protein_coding protein_coding MGP_CASTEiJ_T0076382.1 MGP_CASTEiJ_G0029528.1 mouse_genomes_project 6 1661215 1934070 + MGP_CASTEiJ_P0076382 Ppp1r9a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076383.1 MGP_CASTEiJ_G0029528.1 mouse_genomes_project 6 1661215 1934078 + MGP_CASTEiJ_P0076383 Ppp1r9a protein_coding protein_coding MGP_CASTEiJ_T0076384.1 MGP_CASTEiJ_G0029528.1 mouse_genomes_project 6 1662206 1928522 + MGP_CASTEiJ_P0076384 Ppp1r9a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076385.1 MGP_CASTEiJ_G0029528.1 mouse_genomes_project 6 1878916 1882065 + Ppp1r9a protein_coding processed_transcript MGP_CASTEiJ_T0076386.1 MGP_CASTEiJ_G0029528.1 mouse_genomes_project 6 1881736 1884839 + Ppp1r9a protein_coding retained_intron MGP_CASTEiJ_T0080421.1 MGP_CASTEiJ_G0030373.1 mouse_genomes_project 6 127357630 127364411 + MGP_CASTEiJ_P0080421 Vamp1 protein_coding protein_coding MGP_CASTEiJ_T0080422.1 MGP_CASTEiJ_G0030373.1 mouse_genomes_project 6 127357660 127364268 + MGP_CASTEiJ_P0080422 Vamp1 protein_coding protein_coding MGP_CASTEiJ_T0080423.1 MGP_CASTEiJ_G0030373.1 mouse_genomes_project 6 127357660 127385149 + MGP_CASTEiJ_P0080423 Vamp1 protein_coding protein_coding MGP_CASTEiJ_T0080424.1 MGP_CASTEiJ_G0030373.1 mouse_genomes_project 6 127360675 127363756 + MGP_CASTEiJ_P0080424 Vamp1 protein_coding protein_coding MGP_CASTEiJ_T0080426.1 MGP_CASTEiJ_G0030373.1 mouse_genomes_project 6 127373375 127389995 + Vamp1 protein_coding processed_transcript MGP_CASTEiJ_T0080427.1 MGP_CASTEiJ_G0030373.1 mouse_genomes_project 6 127373375 127383834 + Vamp1 protein_coding processed_transcript MGP_CASTEiJ_T0077354.1 MGP_CASTEiJ_G0029715.1 mouse_genomes_project 6 38765398 38774997 - MGP_CASTEiJ_P0077354 Moxd2 protein_coding protein_coding MGP_CASTEiJ_T0004784.1 MGP_CASTEiJ_G0004117.1 mouse_genomes_project 6 27966417 27969321 - Gm13781 antisense antisense MGP_CASTEiJ_T0102440.1 MGP_CASTEiJ_G0039165.1 mouse_genomes_project 6 135527249 135528651 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015034.1 MGP_CASTEiJ_G0013197.1 mouse_genomes_project 6 127404537 127404835 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002121.1 MGP_CASTEiJ_G0002041.1 mouse_genomes_project 6 152458152 152461737 - TEC TEC MGP_CASTEiJ_T0101180.1 MGP_CASTEiJ_G0038093.1 mouse_genomes_project 6 67355039 67355179 - Gm25910 snoRNA snoRNA MGP_CASTEiJ_T0014899.1 MGP_CASTEiJ_G0013062.1 mouse_genomes_project 6 75595634 75596033 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077949.1 MGP_CASTEiJ_G0029877.1 mouse_genomes_project 6 55258337 55259751 + Avl9 protein_coding retained_intron MGP_CASTEiJ_T0077950.1 MGP_CASTEiJ_G0029877.1 mouse_genomes_project 6 55258365 55304822 + MGP_CASTEiJ_P0077950 Avl9 protein_coding protein_coding MGP_CASTEiJ_T0077951.1 MGP_CASTEiJ_G0029877.1 mouse_genomes_project 6 55258376 55283587 + MGP_CASTEiJ_P0077951 Avl9 protein_coding protein_coding MGP_CASTEiJ_T0077952.1 MGP_CASTEiJ_G0029877.1 mouse_genomes_project 6 55258380 55272902 + MGP_CASTEiJ_P0077952 Avl9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077953.1 MGP_CASTEiJ_G0029877.1 mouse_genomes_project 6 55258493 55295664 + MGP_CASTEiJ_P0077953 Avl9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077954.1 MGP_CASTEiJ_G0029877.1 mouse_genomes_project 6 55287339 55296181 + Avl9 protein_coding retained_intron MGP_CASTEiJ_T0008445.1 MGP_CASTEiJ_G0006841.1 mouse_genomes_project 6 88259214 88260552 + Gm43904 lincRNA lincRNA MGP_CASTEiJ_T0080196.1 MGP_CASTEiJ_G0030334.1 mouse_genomes_project 6 126280127 126314444 - MGP_CASTEiJ_P0080196 protein_coding protein_coding MGP_CASTEiJ_T0077788.1 MGP_CASTEiJ_G0029842.1 mouse_genomes_project 6 50571450 50575000 - MGP_CASTEiJ_P0077788 Hoxa6 protein_coding protein_coding MGP_CASTEiJ_T0102412.1 MGP_CASTEiJ_G0039137.1 mouse_genomes_project 6 90268775 90269574 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0004885.1 MGP_CASTEiJ_G0004187.1 mouse_genomes_project 6 88461581 88464871 + Gm5577 antisense antisense MGP_CASTEiJ_T0004886.1 MGP_CASTEiJ_G0004187.1 mouse_genomes_project 6 88462381 88464863 + Gm5577 antisense antisense MGP_CASTEiJ_T0004887.1 MGP_CASTEiJ_G0004187.1 mouse_genomes_project 6 88462381 88488239 + Gm5577 antisense antisense MGP_CASTEiJ_T0002642.1 MGP_CASTEiJ_G0002532.1 mouse_genomes_project 6 39111730 39112003 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0080177.1 MGP_CASTEiJ_G0030328.1 mouse_genomes_project 6 125083838 125110110 + MGP_CASTEiJ_P0080177 Clec4b2 protein_coding protein_coding MGP_CASTEiJ_T0014927.1 MGP_CASTEiJ_G0013090.1 mouse_genomes_project 6 86283381 86284225 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002079.1 MGP_CASTEiJ_G0001999.1 mouse_genomes_project 6 130763745 130766147 + TEC TEC MGP_CASTEiJ_T0080470.1 MGP_CASTEiJ_G0030384.1 mouse_genomes_project 6 128296104 128364777 - MGP_CASTEiJ_P0080470 Ntf3 protein_coding protein_coding MGP_CASTEiJ_T0080471.1 MGP_CASTEiJ_G0030384.1 mouse_genomes_project 6 128296104 128362622 - MGP_CASTEiJ_P0080471 Ntf3 protein_coding protein_coding MGP_CASTEiJ_T0080472.1 MGP_CASTEiJ_G0030384.1 mouse_genomes_project 6 128296104 128364977 - MGP_CASTEiJ_P0080472 Ntf3 protein_coding protein_coding MGP_CASTEiJ_T0077277.1 MGP_CASTEiJ_G0029695.1 mouse_genomes_project 6 37197093 37222803 - MGP_CASTEiJ_P0077277 Mkrn1 protein_coding protein_coding MGP_CASTEiJ_T0077278.1 MGP_CASTEiJ_G0029695.1 mouse_genomes_project 6 37197093 37222117 - MGP_CASTEiJ_P0077278 Mkrn1 protein_coding protein_coding MGP_CASTEiJ_T0077279.1 MGP_CASTEiJ_G0029695.1 mouse_genomes_project 6 37198429 37203993 - MGP_CASTEiJ_P0077279 Mkrn1 protein_coding protein_coding MGP_CASTEiJ_T0077280.1 MGP_CASTEiJ_G0029695.1 mouse_genomes_project 6 37200039 37222408 - MGP_CASTEiJ_P0077280 Mkrn1 protein_coding protein_coding MGP_CASTEiJ_T0077281.1 MGP_CASTEiJ_G0029695.1 mouse_genomes_project 6 37200045 37222699 - MGP_CASTEiJ_P0077281 Mkrn1 protein_coding protein_coding MGP_CASTEiJ_T0077282.1 MGP_CASTEiJ_G0029695.1 mouse_genomes_project 6 37200560 37204344 - Mkrn1 protein_coding retained_intron MGP_CASTEiJ_T0077283.1 MGP_CASTEiJ_G0029695.1 mouse_genomes_project 6 37204073 37222098 - MGP_CASTEiJ_P0077283 Mkrn1 protein_coding protein_coding MGP_CASTEiJ_T0077284.1 MGP_CASTEiJ_G0029695.1 mouse_genomes_project 6 37204801 37222639 - MGP_CASTEiJ_P0077284 Mkrn1 protein_coding protein_coding MGP_CASTEiJ_T0014937.1 MGP_CASTEiJ_G0013100.1 mouse_genomes_project 6 92860406 92862593 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014769.1 MGP_CASTEiJ_G0012932.1 mouse_genomes_project 6 35180869 35181409 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014805.1 MGP_CASTEiJ_G0012968.1 mouse_genomes_project 6 47208206 47208516 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076462.1 MGP_CASTEiJ_G0029547.1 mouse_genomes_project 6 5063627 5416580 + MGP_CASTEiJ_P0076462 Gm45062 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0004816.1 MGP_CASTEiJ_G0004144.1 mouse_genomes_project 6 50518622 50520268 + Hotairm1 antisense antisense MGP_CASTEiJ_T0004817.1 MGP_CASTEiJ_G0004144.1 mouse_genomes_project 6 50520171 50523899 + Hotairm1 antisense antisense MGP_CASTEiJ_T0004818.1 MGP_CASTEiJ_G0004144.1 mouse_genomes_project 6 50520263 50523800 + Hotairm1 antisense antisense MGP_CASTEiJ_T0079132.1 MGP_CASTEiJ_G0030134.1 mouse_genomes_project 6 92124452 92139278 + MGP_CASTEiJ_P0079132 Tmem43 protein_coding protein_coding MGP_CASTEiJ_T0079133.1 MGP_CASTEiJ_G0030134.1 mouse_genomes_project 6 92124476 92128440 + Tmem43 protein_coding retained_intron MGP_CASTEiJ_T0079134.1 MGP_CASTEiJ_G0030134.1 mouse_genomes_project 6 92124500 92125225 + Tmem43 protein_coding processed_transcript MGP_CASTEiJ_T0079135.1 MGP_CASTEiJ_G0030134.1 mouse_genomes_project 6 92124508 92129943 + Tmem43 protein_coding retained_intron MGP_CASTEiJ_T0079136.1 MGP_CASTEiJ_G0030134.1 mouse_genomes_project 6 92127406 92129060 + Tmem43 protein_coding processed_transcript MGP_CASTEiJ_T0077794.1 MGP_CASTEiJ_G0029844.1 mouse_genomes_project 6 50589353 50593591 - MGP_CASTEiJ_P0077794 Hoxa9 protein_coding protein_coding MGP_CASTEiJ_T0077795.1 MGP_CASTEiJ_G0029844.1 mouse_genomes_project 6 50590220 50597324 - Hoxa9 protein_coding processed_transcript MGP_CASTEiJ_T0077796.1 MGP_CASTEiJ_G0029844.1 mouse_genomes_project 6 50590377 50592411 - MGP_CASTEiJ_P0077796 Hoxa9 protein_coding protein_coding MGP_CASTEiJ_T0077797.1 MGP_CASTEiJ_G0029844.1 mouse_genomes_project 6 50590579 50596519 - Hoxa9 protein_coding processed_transcript MGP_CASTEiJ_T0077798.1 MGP_CASTEiJ_G0029844.1 mouse_genomes_project 6 50594484 50596769 - Hoxa9 protein_coding retained_intron MGP_CASTEiJ_T0077349.1 MGP_CASTEiJ_G0029714.1 mouse_genomes_project 6 38497022 38530760 + MGP_CASTEiJ_P0077349 Mgam protein_coding protein_coding MGP_CASTEiJ_T0077350.1 MGP_CASTEiJ_G0029714.1 mouse_genomes_project 6 38497022 38650865 + MGP_CASTEiJ_P0077350 Mgam protein_coding protein_coding MGP_CASTEiJ_T0077351.1 MGP_CASTEiJ_G0029714.1 mouse_genomes_project 6 38513429 38628769 + MGP_CASTEiJ_P0077351 Mgam protein_coding unknown_likely_coding MGP_CASTEiJ_T0077352.1 MGP_CASTEiJ_G0029714.1 mouse_genomes_project 6 38628611 38650856 + Mgam protein_coding processed_transcript MGP_CASTEiJ_T0077353.1 MGP_CASTEiJ_G0029714.1 mouse_genomes_project 6 38629040 38630626 + Mgam protein_coding processed_transcript MGP_CASTEiJ_T0002486.1 MGP_CASTEiJ_G0002397.1 mouse_genomes_project 6 39368288 39368342 + Trbj1-3 TR_J_gene processed_transcript MGP_CASTEiJ_T0002487.1 MGP_CASTEiJ_G0002397.1 mouse_genomes_project 6 39368288 39368338 + MGP_CASTEiJ_P0002487 Trbj1-3 TR_J_gene TR_J_gene MGP_CASTEiJ_T0079714.1 MGP_CASTEiJ_G0030240.1 mouse_genomes_project 6 117249620 117282185 - MGP_CASTEiJ_P0079714 Tmem40 protein_coding protein_coding MGP_CASTEiJ_T0079715.1 MGP_CASTEiJ_G0030240.1 mouse_genomes_project 6 117249628 117281870 - MGP_CASTEiJ_P0079715 Tmem40 protein_coding protein_coding MGP_CASTEiJ_T0079716.1 MGP_CASTEiJ_G0030240.1 mouse_genomes_project 6 117249628 117288293 - MGP_CASTEiJ_P0079716 Tmem40 protein_coding protein_coding MGP_CASTEiJ_T0079717.1 MGP_CASTEiJ_G0030240.1 mouse_genomes_project 6 117249633 117254910 - Tmem40 protein_coding processed_transcript MGP_CASTEiJ_T0079718.1 MGP_CASTEiJ_G0030240.1 mouse_genomes_project 6 117250023 117255248 - Tmem40 protein_coding retained_intron MGP_CASTEiJ_T0102416.1 MGP_CASTEiJ_G0039141.1 mouse_genomes_project 6 90661396 90661568 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101204.1 MGP_CASTEiJ_G0038117.1 mouse_genomes_project 6 125308699 125308815 - Gm22722 snoRNA snoRNA MGP_CASTEiJ_T0008463.1 MGP_CASTEiJ_G0006853.1 mouse_genomes_project 6 99460069 99655457 - Gm44196 lincRNA lincRNA MGP_CASTEiJ_T0008465.1 MGP_CASTEiJ_G0006853.1 mouse_genomes_project 6 99618003 99655476 - Gm44196 lincRNA lincRNA MGP_CASTEiJ_T0008466.1 MGP_CASTEiJ_G0006853.1 mouse_genomes_project 6 99651592 99655506 - Gm44196 lincRNA lincRNA MGP_CASTEiJ_T0008398.1 MGP_CASTEiJ_G0006801.1 mouse_genomes_project 6 53666826 53679378 + Gm43995 lincRNA lincRNA MGP_CASTEiJ_T0005475.1 MGP_CASTEiJ_G0004622.1 mouse_genomes_project 6 60296891 60301022 - A730020E08Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0005476.1 MGP_CASTEiJ_G0004622.1 mouse_genomes_project 6 60300479 60306791 - A730020E08Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0005477.1 MGP_CASTEiJ_G0004622.1 mouse_genomes_project 6 60302536 60307331 - A730020E08Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0079430.1 MGP_CASTEiJ_G0030192.1 mouse_genomes_project 6 113739659 113798401 + MGP_CASTEiJ_P0079430 Lmcd1 protein_coding protein_coding MGP_CASTEiJ_T0077546.1 MGP_CASTEiJ_G0029787.1 mouse_genomes_project 6 46015482 46026572 + MGP_CASTEiJ_P0077546 Zfp956 protein_coding protein_coding MGP_CASTEiJ_T0077547.1 MGP_CASTEiJ_G0029787.1 mouse_genomes_project 6 46015537 46018383 + Zfp956 protein_coding retained_intron MGP_CASTEiJ_T0077548.1 MGP_CASTEiJ_G0029787.1 mouse_genomes_project 6 46015539 46026569 + MGP_CASTEiJ_P0077548 Zfp956 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0004764.1 MGP_CASTEiJ_G0004104.1 mouse_genomes_project 6 2770759 2788561 - 1700019G24Rik antisense antisense MGP_CASTEiJ_T0001902.1 MGP_CASTEiJ_G0001823.1 mouse_genomes_project 6 43293327 43293883 + TEC TEC MGP_CASTEiJ_T0014874.1 MGP_CASTEiJ_G0013037.1 mouse_genomes_project 6 66816843 66817425 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014901.1 MGP_CASTEiJ_G0013064.1 mouse_genomes_project 6 76312854 76313328 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002015.1 MGP_CASTEiJ_G0001936.1 mouse_genomes_project 6 92375850 92377682 + TEC TEC MGP_CASTEiJ_T0014946.1 MGP_CASTEiJ_G0013109.1 mouse_genomes_project 6 95339945 95340164 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079061.1 MGP_CASTEiJ_G0030121.1 mouse_genomes_project 6 90924108 90939705 - MGP_CASTEiJ_P0079061 Chst13 protein_coding protein_coding MGP_CASTEiJ_T0001889.1 MGP_CASTEiJ_G0001810.1 mouse_genomes_project 6 38091871 38094699 + TEC TEC MGP_CASTEiJ_T0101804.1 MGP_CASTEiJ_G0038571.1 mouse_genomes_project 6 86086665 86132725 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0101805.1 MGP_CASTEiJ_G0038571.1 mouse_genomes_project 6 86106041 86132725 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0079810.1 MGP_CASTEiJ_G0030258.1 mouse_genomes_project 6 118129222 118132294 + MGP_CASTEiJ_P0079810 Olfr214 protein_coding protein_coding MGP_CASTEiJ_T0079811.1 MGP_CASTEiJ_G0030258.1 mouse_genomes_project 6 118131286 118132294 + MGP_CASTEiJ_P0079811 Olfr214 protein_coding protein_coding MGP_CASTEiJ_T0077155.1 MGP_CASTEiJ_G0029669.1 mouse_genomes_project 6 32897360 32910126 - MGP_CASTEiJ_P0077155 Fam180a protein_coding protein_coding MGP_CASTEiJ_T0014702.1 MGP_CASTEiJ_G0012865.1 mouse_genomes_project 6 991380 991476 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015106.1 MGP_CASTEiJ_G0013269.1 mouse_genomes_project 6 152586302 152587152 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079812.1 MGP_CASTEiJ_G0030259.1 mouse_genomes_project 6 118153819 118154913 - MGP_CASTEiJ_P0079812 Olfr215 protein_coding protein_coding MGP_CASTEiJ_T0081207.1 MGP_CASTEiJ_G0030561.1 mouse_genomes_project 6 149681268 149689111 + Med21 protein_coding processed_transcript MGP_CASTEiJ_T0081208.1 MGP_CASTEiJ_G0030561.1 mouse_genomes_project 6 149681268 149689111 + MGP_CASTEiJ_P0081208 Med21 protein_coding protein_coding MGP_CASTEiJ_T0081209.1 MGP_CASTEiJ_G0030561.1 mouse_genomes_project 6 149681300 149682665 + Med21 protein_coding retained_intron MGP_CASTEiJ_T0081210.1 MGP_CASTEiJ_G0030561.1 mouse_genomes_project 6 149681301 149688042 + MGP_CASTEiJ_P0081210 Med21 protein_coding protein_coding MGP_CASTEiJ_T0081211.1 MGP_CASTEiJ_G0030561.1 mouse_genomes_project 6 149681302 149689111 + Med21 protein_coding processed_transcript MGP_CASTEiJ_T0081212.1 MGP_CASTEiJ_G0030561.1 mouse_genomes_project 6 149681312 149689241 + MGP_CASTEiJ_P0081212 Med21 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081213.1 MGP_CASTEiJ_G0030561.1 mouse_genomes_project 6 149685877 149689111 + Med21 protein_coding retained_intron MGP_CASTEiJ_T0002051.1 MGP_CASTEiJ_G0001972.1 mouse_genomes_project 6 114928413 114931527 + TEC TEC MGP_CASTEiJ_T0098393.1 MGP_CASTEiJ_G0035324.1 mouse_genomes_project 6 68313648 68313930 - pseudogene pseudogene MGP_CASTEiJ_T0077488.1 MGP_CASTEiJ_G0029776.1 mouse_genomes_project 6 41156983 41180936 + MGP_CASTEiJ_P0077488 Arhgef5 protein_coding protein_coding MGP_CASTEiJ_T0077489.1 MGP_CASTEiJ_G0029776.1 mouse_genomes_project 6 41166135 41180935 + MGP_CASTEiJ_P0077489 Arhgef5 protein_coding protein_coding MGP_CASTEiJ_T0077490.1 MGP_CASTEiJ_G0029776.1 mouse_genomes_project 6 41168559 41171560 + Arhgef5 protein_coding retained_intron MGP_CASTEiJ_T0077491.1 MGP_CASTEiJ_G0029776.1 mouse_genomes_project 6 41168668 41178816 + Arhgef5 protein_coding retained_intron MGP_CASTEiJ_T0077492.1 MGP_CASTEiJ_G0029776.1 mouse_genomes_project 6 41171094 41180932 + Arhgef5 protein_coding retained_intron MGP_CASTEiJ_T0077493.1 MGP_CASTEiJ_G0029776.1 mouse_genomes_project 6 41172626 41175200 + Arhgef5 protein_coding retained_intron MGP_CASTEiJ_T0077494.1 MGP_CASTEiJ_G0029776.1 mouse_genomes_project 6 41174247 41180931 + Arhgef5 protein_coding retained_intron MGP_CASTEiJ_T0077495.1 MGP_CASTEiJ_G0029776.1 mouse_genomes_project 6 41174515 41175656 + Arhgef5 protein_coding retained_intron MGP_CASTEiJ_T0010446.1 MGP_CASTEiJ_G0008634.1 mouse_genomes_project 6 1835828 1835933 - Gm44333 miRNA miRNA MGP_CASTEiJ_T0076446.1 MGP_CASTEiJ_G0029542.1 mouse_genomes_project 6 4638215 4669972 + MGP_CASTEiJ_P0076446 C1galt1 protein_coding protein_coding MGP_CASTEiJ_T0008510.1 MGP_CASTEiJ_G0006893.1 mouse_genomes_project 6 129503282 129507509 - Gm43635 lincRNA lincRNA MGP_CASTEiJ_T0015079.1 MGP_CASTEiJ_G0013242.1 mouse_genomes_project 6 139202227 139202516 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102434.1 MGP_CASTEiJ_G0039159.1 mouse_genomes_project 6 135238353 135239345 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0077820.1 MGP_CASTEiJ_G0029851.1 mouse_genomes_project 6 51178742 51323958 - Jazf1 protein_coding processed_transcript MGP_CASTEiJ_T0077821.1 MGP_CASTEiJ_G0029851.1 mouse_genomes_project 6 51178742 51188259 - Jazf1 protein_coding processed_transcript MGP_CASTEiJ_T0077822.1 MGP_CASTEiJ_G0029851.1 mouse_genomes_project 6 51178742 51489210 - MGP_CASTEiJ_P0077822 Jazf1 protein_coding protein_coding MGP_CASTEiJ_T0015009.1 MGP_CASTEiJ_G0013172.1 mouse_genomes_project 6 122954775 122957905 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080603.1 MGP_CASTEiJ_G0030413.1 mouse_genomes_project 6 131032033 131206564 - MGP_CASTEiJ_P0080603 Klrb1a protein_coding protein_coding MGP_CASTEiJ_T0080605.1 MGP_CASTEiJ_G0030413.1 mouse_genomes_project 6 131038227 131207169 - MGP_CASTEiJ_P0080605 Klrb1a protein_coding protein_coding MGP_CASTEiJ_T0014961.1 MGP_CASTEiJ_G0013124.1 mouse_genomes_project 6 102069322 102070957 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077338.1 MGP_CASTEiJ_G0029707.1 mouse_genomes_project 6 38369824 38370893 + MGP_CASTEiJ_P0077338 protein_coding protein_coding MGP_CASTEiJ_T0080608.1 MGP_CASTEiJ_G0030416.1 mouse_genomes_project 6 131195808 131206604 - MGP_CASTEiJ_P0080608 protein_coding protein_coding MGP_CASTEiJ_T0080610.1 MGP_CASTEiJ_G0030416.1 mouse_genomes_project 6 131201853 131207169 - MGP_CASTEiJ_P0080610 protein_coding protein_coding MGP_CASTEiJ_T0008418.1 MGP_CASTEiJ_G0006820.1 mouse_genomes_project 6 72651859 72655671 + Gm26640 lincRNA lincRNA MGP_CASTEiJ_T0099964.1 MGP_CASTEiJ_G0036877.1 mouse_genomes_project 6 95975306 95975413 - Gm26501 snRNA snRNA MGP_CASTEiJ_T0014841.1 MGP_CASTEiJ_G0013004.1 mouse_genomes_project 6 61828807 61829044 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102413.1 MGP_CASTEiJ_G0039138.1 mouse_genomes_project 6 90511719 90512661 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010454.1 MGP_CASTEiJ_G0008642.1 mouse_genomes_project 6 26695556 26695699 - Gm44354 miRNA miRNA MGP_CASTEiJ_T0014823.1 MGP_CASTEiJ_G0012986.1 mouse_genomes_project 6 52633692 52633892 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076707.1 MGP_CASTEiJ_G0029589.1 mouse_genomes_project 6 21153685 21154585 - MGP_CASTEiJ_P0076707 Tas2r118 protein_coding protein_coding MGP_CASTEiJ_T0078758.1 MGP_CASTEiJ_G0030061.1 mouse_genomes_project 6 86779420 86788206 + MGP_CASTEiJ_P0078758 Snrpg protein_coding protein_coding MGP_CASTEiJ_T0078759.1 MGP_CASTEiJ_G0030061.1 mouse_genomes_project 6 86779658 86785643 + Snrpg protein_coding retained_intron MGP_CASTEiJ_T0078760.1 MGP_CASTEiJ_G0030061.1 mouse_genomes_project 6 86779687 86787785 + Snrpg protein_coding processed_transcript MGP_CASTEiJ_T0078761.1 MGP_CASTEiJ_G0030061.1 mouse_genomes_project 6 86779720 86787736 + Snrpg protein_coding processed_transcript MGP_CASTEiJ_T0014903.1 MGP_CASTEiJ_G0013066.1 mouse_genomes_project 6 78408648 78409620 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010470.1 MGP_CASTEiJ_G0008658.1 mouse_genomes_project 6 49932387 49932464 + Gm22914 miRNA miRNA MGP_CASTEiJ_T0080210.1 MGP_CASTEiJ_G0030338.1 mouse_genomes_project 6 126520958 126555686 - MGP_CASTEiJ_P0080210 Clstn3 protein_coding protein_coding MGP_CASTEiJ_T0080211.1 MGP_CASTEiJ_G0030338.1 mouse_genomes_project 6 126521511 126523707 - Clstn3 protein_coding processed_transcript MGP_CASTEiJ_T0080212.1 MGP_CASTEiJ_G0030338.1 mouse_genomes_project 6 126526969 126529074 - Clstn3 protein_coding retained_intron MGP_CASTEiJ_T0080213.1 MGP_CASTEiJ_G0030338.1 mouse_genomes_project 6 126529098 126539448 - Clstn3 protein_coding retained_intron MGP_CASTEiJ_T0080214.1 MGP_CASTEiJ_G0030338.1 mouse_genomes_project 6 126544931 126546880 - Clstn3 protein_coding processed_transcript MGP_CASTEiJ_T0080215.1 MGP_CASTEiJ_G0030338.1 mouse_genomes_project 6 126552842 126555303 - MGP_CASTEiJ_P0080215 Clstn3 protein_coding protein_coding MGP_CASTEiJ_T0004989.1 MGP_CASTEiJ_G0004268.1 mouse_genomes_project 6 150030229 150031870 - Gm44085 antisense antisense MGP_CASTEiJ_T0002610.1 MGP_CASTEiJ_G0002503.1 mouse_genomes_project 6 39117296 39117785 + MGP_CASTEiJ_P0002610 Trbv26 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002611.1 MGP_CASTEiJ_G0002503.1 mouse_genomes_project 6 39117316 39117785 + MGP_CASTEiJ_P0002611 Trbv26 TR_V_gene TR_V_gene MGP_CASTEiJ_T0014960.1 MGP_CASTEiJ_G0013123.1 mouse_genomes_project 6 101801459 101802042 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008400.1 MGP_CASTEiJ_G0006803.1 mouse_genomes_project 6 54213109 54224548 + Gm3279 lincRNA lincRNA MGP_CASTEiJ_T0000149.1 MGP_CASTEiJ_G0000114.1 mouse_genomes_project 6 67303462 67303936 + MGP_CASTEiJ_P0000149 Igkv9-129 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000150.1 MGP_CASTEiJ_G0000114.1 mouse_genomes_project 6 67303462 67303936 + MGP_CASTEiJ_P0000150 Igkv9-129 IG_V_gene IG_V_gene MGP_CASTEiJ_T0077671.1 MGP_CASTEiJ_G0029813.1 mouse_genomes_project 6 47002730 47045713 + MGP_CASTEiJ_P0077671 protein_coding protein_coding MGP_CASTEiJ_T0077672.1 MGP_CASTEiJ_G0029813.1 mouse_genomes_project 6 47042796 47048670 + MGP_CASTEiJ_P0077672 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077673.1 MGP_CASTEiJ_G0029813.1 mouse_genomes_project 6 47047191 47048488 + protein_coding retained_intron MGP_CASTEiJ_T0077174.1 MGP_CASTEiJ_G0029675.1 mouse_genomes_project 6 35169491 35205969 + MGP_CASTEiJ_P0077174 Akr1d1 protein_coding protein_coding MGP_CASTEiJ_T0077175.1 MGP_CASTEiJ_G0029675.1 mouse_genomes_project 6 35178996 35194946 + Akr1d1 protein_coding processed_transcript MGP_CASTEiJ_T0079202.1 MGP_CASTEiJ_G0030147.1 mouse_genomes_project 6 93494926 93677451 - MGP_CASTEiJ_P0079202 Adamts9 protein_coding protein_coding MGP_CASTEiJ_T0079203.1 MGP_CASTEiJ_G0030147.1 mouse_genomes_project 6 93494928 93677290 - MGP_CASTEiJ_P0079203 Adamts9 protein_coding protein_coding MGP_CASTEiJ_T0079204.1 MGP_CASTEiJ_G0030147.1 mouse_genomes_project 6 93501482 93677181 - MGP_CASTEiJ_P0079204 Adamts9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079205.1 MGP_CASTEiJ_G0030147.1 mouse_genomes_project 6 93520861 93589776 - Adamts9 protein_coding retained_intron MGP_CASTEiJ_T0079208.1 MGP_CASTEiJ_G0030147.1 mouse_genomes_project 6 93575329 93589786 - Adamts9 protein_coding retained_intron MGP_CASTEiJ_T0079209.1 MGP_CASTEiJ_G0030147.1 mouse_genomes_project 6 93581671 93584306 - Adamts9 protein_coding retained_intron MGP_CASTEiJ_T0079211.1 MGP_CASTEiJ_G0030147.1 mouse_genomes_project 6 93659123 93677451 - Adamts9 protein_coding processed_transcript MGP_CASTEiJ_T0002063.1 MGP_CASTEiJ_G0001983.1 mouse_genomes_project 6 122379844 122380316 - TEC TEC MGP_CASTEiJ_T0002115.1 MGP_CASTEiJ_G0002035.1 mouse_genomes_project 6 151292076 151295556 + TEC TEC MGP_CASTEiJ_T0008388.1 MGP_CASTEiJ_G0006795.1 mouse_genomes_project 6 50459130 50470236 + Halr1 lincRNA lincRNA MGP_CASTEiJ_T0008389.1 MGP_CASTEiJ_G0006795.1 mouse_genomes_project 6 50459175 50471332 + Halr1 lincRNA lincRNA MGP_CASTEiJ_T0008390.1 MGP_CASTEiJ_G0006795.1 mouse_genomes_project 6 50459184 50469897 + Halr1 lincRNA lincRNA MGP_CASTEiJ_T0079047.1 MGP_CASTEiJ_G0030110.1 mouse_genomes_project 6 90291853 90292786 + MGP_CASTEiJ_P0079047 Vmn1r40 protein_coding protein_coding MGP_CASTEiJ_T0002054.1 MGP_CASTEiJ_G0001975.1 mouse_genomes_project 6 115263939 115264636 + TEC TEC MGP_CASTEiJ_T0101806.1 MGP_CASTEiJ_G0038572.1 mouse_genomes_project 6 123755358 123769629 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0005485.1 MGP_CASTEiJ_G0004627.1 mouse_genomes_project 6 117747593 117756253 - 9530062K07Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0078259.1 MGP_CASTEiJ_G0029957.1 mouse_genomes_project 6 71832120 71869304 - MGP_CASTEiJ_P0078259 Atoh8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078260.1 MGP_CASTEiJ_G0029957.1 mouse_genomes_project 6 71832120 71870350 - MGP_CASTEiJ_P0078260 Atoh8 protein_coding protein_coding MGP_CASTEiJ_T0078261.1 MGP_CASTEiJ_G0029957.1 mouse_genomes_project 6 71854958 71869997 - Atoh8 protein_coding processed_transcript MGP_CASTEiJ_T0077407.1 MGP_CASTEiJ_G0029744.1 mouse_genomes_project 6 40123144 40125802 + MGP_CASTEiJ_P0077407 Tmem139 protein_coding protein_coding MGP_CASTEiJ_T0008417.1 MGP_CASTEiJ_G0006819.1 mouse_genomes_project 6 71785571 71790395 + Gm45050 lincRNA lincRNA MGP_CASTEiJ_T0077285.1 MGP_CASTEiJ_G0029696.1 mouse_genomes_project 6 37271306 37374022 - MGP_CASTEiJ_P0077285 Dennd2a protein_coding protein_coding MGP_CASTEiJ_T0077286.1 MGP_CASTEiJ_G0029696.1 mouse_genomes_project 6 37272194 37302136 - Dennd2a protein_coding retained_intron MGP_CASTEiJ_T0077287.1 MGP_CASTEiJ_G0029696.1 mouse_genomes_project 6 37279169 37281299 - Dennd2a protein_coding retained_intron MGP_CASTEiJ_T0077288.1 MGP_CASTEiJ_G0029696.1 mouse_genomes_project 6 37295125 37299332 - Dennd2a protein_coding retained_intron MGP_CASTEiJ_T0077289.1 MGP_CASTEiJ_G0029696.1 mouse_genomes_project 6 37310188 37374022 - MGP_CASTEiJ_P0077289 Dennd2a protein_coding protein_coding MGP_CASTEiJ_T0076735.1 MGP_CASTEiJ_G0029601.1 mouse_genomes_project 6 22806250 22832092 - MGP_CASTEiJ_P0076735 Gpr37 protein_coding protein_coding MGP_CASTEiJ_T0076736.1 MGP_CASTEiJ_G0029601.1 mouse_genomes_project 6 22809894 22833029 - MGP_CASTEiJ_P0076736 Gpr37 protein_coding protein_coding MGP_CASTEiJ_T0102432.1 MGP_CASTEiJ_G0039157.1 mouse_genomes_project 6 134900982 134904355 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0080163.1 MGP_CASTEiJ_G0030322.1 mouse_genomes_project 6 124808649 124825848 + MGP_CASTEiJ_P0080163 Necap1 protein_coding protein_coding MGP_CASTEiJ_T0080164.1 MGP_CASTEiJ_G0030322.1 mouse_genomes_project 6 124808724 124811527 + Necap1 protein_coding processed_transcript MGP_CASTEiJ_T0080165.1 MGP_CASTEiJ_G0030322.1 mouse_genomes_project 6 124808746 124818036 + Necap1 protein_coding retained_intron MGP_CASTEiJ_T0080166.1 MGP_CASTEiJ_G0030322.1 mouse_genomes_project 6 124808756 124816751 + Necap1 protein_coding retained_intron MGP_CASTEiJ_T0000175.1 MGP_CASTEiJ_G0000132.1 mouse_genomes_project 6 68331774 68332329 - MGP_CASTEiJ_P0000175 Igkv4-92 IG_V_gene IG_V_gene MGP_CASTEiJ_T0080024.1 MGP_CASTEiJ_G0030294.1 mouse_genomes_project 6 122476106 122540233 + Cecr2 protein_coding retained_intron MGP_CASTEiJ_T0080025.1 MGP_CASTEiJ_G0030294.1 mouse_genomes_project 6 122476158 122592559 + MGP_CASTEiJ_P0080025 Cecr2 protein_coding protein_coding MGP_CASTEiJ_T0080026.1 MGP_CASTEiJ_G0030294.1 mouse_genomes_project 6 122476272 122540061 + Cecr2 protein_coding processed_transcript MGP_CASTEiJ_T0080027.1 MGP_CASTEiJ_G0030294.1 mouse_genomes_project 6 122476319 122588265 + MGP_CASTEiJ_P0080027 Cecr2 protein_coding protein_coding MGP_CASTEiJ_T0080028.1 MGP_CASTEiJ_G0030294.1 mouse_genomes_project 6 122549684 122577782 + Cecr2 protein_coding processed_transcript MGP_CASTEiJ_T0080029.1 MGP_CASTEiJ_G0030294.1 mouse_genomes_project 6 122549751 122576660 + MGP_CASTEiJ_P0080029 Cecr2 protein_coding protein_coding MGP_CASTEiJ_T0080030.1 MGP_CASTEiJ_G0030294.1 mouse_genomes_project 6 122550899 122559063 + Cecr2 protein_coding retained_intron MGP_CASTEiJ_T0080031.1 MGP_CASTEiJ_G0030294.1 mouse_genomes_project 6 122579245 122582862 + MGP_CASTEiJ_P0080031 Cecr2 protein_coding protein_coding MGP_CASTEiJ_T0077355.1 MGP_CASTEiJ_G0029716.1 mouse_genomes_project 6 38782766 38789056 - MGP_CASTEiJ_P0077355 Prss58 protein_coding protein_coding MGP_CASTEiJ_T0081218.1 MGP_CASTEiJ_G0030564.1 mouse_genomes_project 6 149829601 149839408 + Arntl2 protein_coding processed_transcript MGP_CASTEiJ_T0081219.1 MGP_CASTEiJ_G0030564.1 mouse_genomes_project 6 149829611 149866361 + MGP_CASTEiJ_P0081219 Arntl2 protein_coding protein_coding MGP_CASTEiJ_T0081220.1 MGP_CASTEiJ_G0030564.1 mouse_genomes_project 6 149829626 149865351 + MGP_CASTEiJ_P0081220 Arntl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0081221.1 MGP_CASTEiJ_G0030564.1 mouse_genomes_project 6 149839359 149865351 + MGP_CASTEiJ_P0081221 Arntl2 protein_coding protein_coding MGP_CASTEiJ_T0081222.1 MGP_CASTEiJ_G0030564.1 mouse_genomes_project 6 149839359 149865351 + MGP_CASTEiJ_P0081222 Arntl2 protein_coding protein_coding MGP_CASTEiJ_T0081223.1 MGP_CASTEiJ_G0030564.1 mouse_genomes_project 6 149839359 149865351 + MGP_CASTEiJ_P0081223 Arntl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081224.1 MGP_CASTEiJ_G0030564.1 mouse_genomes_project 6 149839359 149865351 + MGP_CASTEiJ_P0081224 Arntl2 protein_coding protein_coding MGP_CASTEiJ_T0081225.1 MGP_CASTEiJ_G0030564.1 mouse_genomes_project 6 149853073 149855776 + Arntl2 protein_coding retained_intron MGP_CASTEiJ_T0081226.1 MGP_CASTEiJ_G0030564.1 mouse_genomes_project 6 149855233 149856524 + Arntl2 protein_coding retained_intron MGP_CASTEiJ_T0081227.1 MGP_CASTEiJ_G0030564.1 mouse_genomes_project 6 149863072 149866354 + Arntl2 protein_coding retained_intron MGP_CASTEiJ_T0008498.1 MGP_CASTEiJ_G0006881.1 mouse_genomes_project 6 119872977 119874729 - 1700069P05Rik lincRNA lincRNA MGP_CASTEiJ_T0008471.1 MGP_CASTEiJ_G0006858.1 mouse_genomes_project 6 101552230 101553626 + Gm44107 lincRNA lincRNA MGP_CASTEiJ_T0079197.1 MGP_CASTEiJ_G0030145.1 mouse_genomes_project 6 92939297 92941824 - MGP_CASTEiJ_P0079197 Trh protein_coding protein_coding MGP_CASTEiJ_T0014788.1 MGP_CASTEiJ_G0012951.1 mouse_genomes_project 6 42740933 42741830 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077448.1 MGP_CASTEiJ_G0029754.1 mouse_genomes_project 6 40330769 40331689 - MGP_CASTEiJ_P0077448 Olfr458 protein_coding protein_coding MGP_CASTEiJ_T0004935.1 MGP_CASTEiJ_G0004220.1 mouse_genomes_project 6 121300595 121307691 + Gm44317 antisense antisense MGP_CASTEiJ_T0014990.1 MGP_CASTEiJ_G0013153.1 mouse_genomes_project 6 114954752 114955161 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077974.1 MGP_CASTEiJ_G0029883.1 mouse_genomes_project 6 55541717 55542771 + MGP_CASTEiJ_P0077974 Vmn1r5 protein_coding protein_coding MGP_CASTEiJ_T0011313.1 MGP_CASTEiJ_G0009501.1 mouse_genomes_project 6 50612228 50612324 + Gm28032 misc_RNA misc_RNA MGP_CASTEiJ_T0077614.1 MGP_CASTEiJ_G0029800.1 mouse_genomes_project 6 46719648 46738146 + MGP_CASTEiJ_P0077614 Zfp775 protein_coding protein_coding MGP_CASTEiJ_T0077615.1 MGP_CASTEiJ_G0029800.1 mouse_genomes_project 6 46723167 46734713 + MGP_CASTEiJ_P0077615 Zfp775 protein_coding protein_coding MGP_CASTEiJ_T0077616.1 MGP_CASTEiJ_G0029800.1 mouse_genomes_project 6 46730549 46738146 + MGP_CASTEiJ_P0077616 Zfp775 protein_coding protein_coding MGP_CASTEiJ_T0102368.1 MGP_CASTEiJ_G0039093.1 mouse_genomes_project 6 6854138 6854822 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0080895.1 MGP_CASTEiJ_G0030508.1 mouse_genomes_project 6 140085482 140260986 - MGP_CASTEiJ_P0080895 Eps8 protein_coding protein_coding MGP_CASTEiJ_T0080896.1 MGP_CASTEiJ_G0030508.1 mouse_genomes_project 6 140085905 140183738 - MGP_CASTEiJ_P0080896 Eps8 protein_coding protein_coding MGP_CASTEiJ_T0080897.1 MGP_CASTEiJ_G0030508.1 mouse_genomes_project 6 140086415 140260986 - MGP_CASTEiJ_P0080897 Eps8 protein_coding protein_coding MGP_CASTEiJ_T0080898.1 MGP_CASTEiJ_G0030508.1 mouse_genomes_project 6 140110438 140260001 - MGP_CASTEiJ_P0080898 Eps8 protein_coding protein_coding MGP_CASTEiJ_T0080899.1 MGP_CASTEiJ_G0030508.1 mouse_genomes_project 6 140125136 140131113 - Eps8 protein_coding processed_transcript MGP_CASTEiJ_T0080900.1 MGP_CASTEiJ_G0030508.1 mouse_genomes_project 6 140127880 140268056 - MGP_CASTEiJ_P0080900 Eps8 protein_coding protein_coding MGP_CASTEiJ_T0080901.1 MGP_CASTEiJ_G0030508.1 mouse_genomes_project 6 140127904 140131056 - Eps8 protein_coding retained_intron MGP_CASTEiJ_T0080902.1 MGP_CASTEiJ_G0030508.1 mouse_genomes_project 6 140134540 140201756 - MGP_CASTEiJ_P0080902 Eps8 protein_coding protein_coding MGP_CASTEiJ_T0080903.1 MGP_CASTEiJ_G0030508.1 mouse_genomes_project 6 140140228 140260930 - Eps8 protein_coding processed_transcript MGP_CASTEiJ_T0080904.1 MGP_CASTEiJ_G0030508.1 mouse_genomes_project 6 140147772 140150873 - Eps8 protein_coding retained_intron MGP_CASTEiJ_T0080905.1 MGP_CASTEiJ_G0030508.1 mouse_genomes_project 6 140150422 140260001 - MGP_CASTEiJ_P0080905 Eps8 protein_coding protein_coding MGP_CASTEiJ_T0080906.1 MGP_CASTEiJ_G0030508.1 mouse_genomes_project 6 140152120 140260943 - MGP_CASTEiJ_P0080906 Eps8 protein_coding protein_coding MGP_CASTEiJ_T0080907.1 MGP_CASTEiJ_G0030508.1 mouse_genomes_project 6 140179864 140183480 - Eps8 protein_coding retained_intron MGP_CASTEiJ_T0014787.1 MGP_CASTEiJ_G0012950.1 mouse_genomes_project 6 42587516 42587661 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101221.1 MGP_CASTEiJ_G0038134.1 mouse_genomes_project 6 148487174 148487289 + Gm25373 snoRNA snoRNA MGP_CASTEiJ_T0081149.1 MGP_CASTEiJ_G0030551.1 mouse_genomes_project 6 148208643 148246097 - MGP_CASTEiJ_P0081149 Kras protein_coding protein_coding MGP_CASTEiJ_T0081150.1 MGP_CASTEiJ_G0030551.1 mouse_genomes_project 6 148211949 148222787 - Kras protein_coding processed_transcript MGP_CASTEiJ_T0081151.1 MGP_CASTEiJ_G0030551.1 mouse_genomes_project 6 148212194 148246097 - MGP_CASTEiJ_P0081151 Kras protein_coding protein_coding MGP_CASTEiJ_T0081152.1 MGP_CASTEiJ_G0030551.1 mouse_genomes_project 6 148212218 148246035 - MGP_CASTEiJ_P0081152 Kras protein_coding protein_coding MGP_CASTEiJ_T0081153.1 MGP_CASTEiJ_G0030551.1 mouse_genomes_project 6 148212270 148246028 - MGP_CASTEiJ_P0081153 Kras protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081154.1 MGP_CASTEiJ_G0030551.1 mouse_genomes_project 6 148212584 148217516 - Kras protein_coding retained_intron MGP_CASTEiJ_T0081155.1 MGP_CASTEiJ_G0030551.1 mouse_genomes_project 6 148239879 148246060 - MGP_CASTEiJ_P0081155 Kras protein_coding protein_coding MGP_CASTEiJ_T0004792.1 MGP_CASTEiJ_G0004124.1 mouse_genomes_project 6 31644870 31667210 + Gm13856 antisense antisense MGP_CASTEiJ_T0010484.1 MGP_CASTEiJ_G0008672.1 mouse_genomes_project 6 88591471 88591602 - Mir6376 miRNA miRNA MGP_CASTEiJ_T0080328.1 MGP_CASTEiJ_G0030359.1 mouse_genomes_project 6 127030013 127034268 - MGP_CASTEiJ_P0080328 Ptms protein_coding protein_coding MGP_CASTEiJ_T0080329.1 MGP_CASTEiJ_G0030359.1 mouse_genomes_project 6 127030020 127031004 - Ptms protein_coding processed_transcript MGP_CASTEiJ_T0080330.1 MGP_CASTEiJ_G0030359.1 mouse_genomes_project 6 127030096 127036398 - Ptms protein_coding processed_transcript MGP_CASTEiJ_T0080331.1 MGP_CASTEiJ_G0030359.1 mouse_genomes_project 6 127030375 127031554 - Ptms protein_coding retained_intron MGP_CASTEiJ_T0080332.1 MGP_CASTEiJ_G0030359.1 mouse_genomes_project 6 127030970 127031853 - Ptms protein_coding processed_transcript MGP_CASTEiJ_T0014859.1 MGP_CASTEiJ_G0013022.1 mouse_genomes_project 6 65325045 65326621 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076780.1 MGP_CASTEiJ_G0029610.1 mouse_genomes_project 6 25906527 26081620 - MGP_CASTEiJ_P0076780 Lrrc4 protein_coding protein_coding MGP_CASTEiJ_T0076785.1 MGP_CASTEiJ_G0029610.1 mouse_genomes_project 6 26079406 26083022 - MGP_CASTEiJ_P0076785 Lrrc4 protein_coding protein_coding MGP_CASTEiJ_T0011291.1 MGP_CASTEiJ_G0009479.1 mouse_genomes_project 6 5250397 5250709 + Gm24059 misc_RNA misc_RNA MGP_CASTEiJ_T0017486.1 MGP_CASTEiJ_G0014942.1 mouse_genomes_project 6 28618932 28742949 + 2210408F21Rik processed_transcript lincRNA MGP_CASTEiJ_T0017487.1 MGP_CASTEiJ_G0014942.1 mouse_genomes_project 6 28618932 28743103 + 2210408F21Rik processed_transcript lincRNA MGP_CASTEiJ_T0017488.1 MGP_CASTEiJ_G0014942.1 mouse_genomes_project 6 28618932 28743075 + 2210408F21Rik processed_transcript lincRNA MGP_CASTEiJ_T0017489.1 MGP_CASTEiJ_G0014942.1 mouse_genomes_project 6 28618938 28743092 + 2210408F21Rik processed_transcript lincRNA MGP_CASTEiJ_T0017490.1 MGP_CASTEiJ_G0014942.1 mouse_genomes_project 6 28618989 28743088 + 2210408F21Rik processed_transcript lincRNA MGP_CASTEiJ_T0017491.1 MGP_CASTEiJ_G0014942.1 mouse_genomes_project 6 28618989 28743079 + 2210408F21Rik processed_transcript lincRNA MGP_CASTEiJ_T0017492.1 MGP_CASTEiJ_G0014942.1 mouse_genomes_project 6 28619006 28734080 + 2210408F21Rik processed_transcript lincRNA MGP_CASTEiJ_T0017493.1 MGP_CASTEiJ_G0014942.1 mouse_genomes_project 6 28619006 28743012 + 2210408F21Rik processed_transcript lincRNA MGP_CASTEiJ_T0017494.1 MGP_CASTEiJ_G0014942.1 mouse_genomes_project 6 28619019 28743096 + 2210408F21Rik processed_transcript lincRNA MGP_CASTEiJ_T0017495.1 MGP_CASTEiJ_G0014942.1 mouse_genomes_project 6 28619025 28743075 + 2210408F21Rik processed_transcript lincRNA MGP_CASTEiJ_T0017496.1 MGP_CASTEiJ_G0014942.1 mouse_genomes_project 6 28619031 28743099 + 2210408F21Rik processed_transcript lincRNA MGP_CASTEiJ_T0017497.1 MGP_CASTEiJ_G0014942.1 mouse_genomes_project 6 28680785 28696096 + 2210408F21Rik processed_transcript lincRNA MGP_CASTEiJ_T0017498.1 MGP_CASTEiJ_G0014942.1 mouse_genomes_project 6 28687932 28743102 + 2210408F21Rik processed_transcript lincRNA MGP_CASTEiJ_T0017499.1 MGP_CASTEiJ_G0014942.1 mouse_genomes_project 6 28695405 28696553 + 2210408F21Rik processed_transcript TEC MGP_CASTEiJ_T0017500.1 MGP_CASTEiJ_G0014942.1 mouse_genomes_project 6 28727743 28743088 + 2210408F21Rik processed_transcript lincRNA MGP_CASTEiJ_T0001925.1 MGP_CASTEiJ_G0001846.1 mouse_genomes_project 6 55463947 55464619 - TEC TEC MGP_CASTEiJ_T0010475.1 MGP_CASTEiJ_G0008663.1 mouse_genomes_project 6 70824211 70824342 + Mir8112 miRNA miRNA MGP_CASTEiJ_T0014767.1 MGP_CASTEiJ_G0012930.1 mouse_genomes_project 6 34149885 34150090 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014976.1 MGP_CASTEiJ_G0013139.1 mouse_genomes_project 6 109196509 109196998 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014997.1 MGP_CASTEiJ_G0013160.1 mouse_genomes_project 6 116637222 116638057 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014803.1 MGP_CASTEiJ_G0012966.1 mouse_genomes_project 6 47134096 47136518 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017511.1 MGP_CASTEiJ_G0014947.1 mouse_genomes_project 6 50610613 50616014 + Hoxa11os processed_transcript antisense MGP_CASTEiJ_T0017512.1 MGP_CASTEiJ_G0014947.1 mouse_genomes_project 6 50611463 50615992 + Hoxa11os processed_transcript antisense MGP_CASTEiJ_T0017513.1 MGP_CASTEiJ_G0014947.1 mouse_genomes_project 6 50612188 50616018 + Hoxa11os processed_transcript antisense MGP_CASTEiJ_T0017514.1 MGP_CASTEiJ_G0014947.1 mouse_genomes_project 6 50612208 50616013 + Hoxa11os processed_transcript antisense MGP_CASTEiJ_T0017515.1 MGP_CASTEiJ_G0014947.1 mouse_genomes_project 6 50612440 50615603 + Hoxa11os processed_transcript retained_intron MGP_CASTEiJ_T0017516.1 MGP_CASTEiJ_G0014947.1 mouse_genomes_project 6 50614640 50616022 + Hoxa11os processed_transcript antisense MGP_CASTEiJ_T0078643.1 MGP_CASTEiJ_G0030033.1 mouse_genomes_project 6 84817990 84831897 - MGP_CASTEiJ_P0078643 Cyp26b1 protein_coding protein_coding MGP_CASTEiJ_T0078644.1 MGP_CASTEiJ_G0030033.1 mouse_genomes_project 6 84818088 84831869 - MGP_CASTEiJ_P0078644 Cyp26b1 protein_coding protein_coding MGP_CASTEiJ_T0015028.1 MGP_CASTEiJ_G0013191.1 mouse_genomes_project 6 126339935 126340869 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079263.1 MGP_CASTEiJ_G0030161.1 mouse_genomes_project 6 98063628 98085128 - MGP_CASTEiJ_P0079263 Uba3 protein_coding protein_coding MGP_CASTEiJ_T0079264.1 MGP_CASTEiJ_G0030161.1 mouse_genomes_project 6 98063777 98085127 - MGP_CASTEiJ_P0079264 Uba3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079265.1 MGP_CASTEiJ_G0030161.1 mouse_genomes_project 6 98063956 98085215 - MGP_CASTEiJ_P0079265 Uba3 protein_coding protein_coding MGP_CASTEiJ_T0079266.1 MGP_CASTEiJ_G0030161.1 mouse_genomes_project 6 98074937 98077083 - Uba3 protein_coding retained_intron MGP_CASTEiJ_T0079267.1 MGP_CASTEiJ_G0030161.1 mouse_genomes_project 6 98082584 98085133 - Uba3 protein_coding retained_intron MGP_CASTEiJ_T0079268.1 MGP_CASTEiJ_G0030161.1 mouse_genomes_project 6 98083660 98085136 - Uba3 protein_coding retained_intron MGP_CASTEiJ_T0078512.1 MGP_CASTEiJ_G0030014.1 mouse_genomes_project 6 83302370 83339239 + MGP_CASTEiJ_P0078512 Dctn1 protein_coding protein_coding MGP_CASTEiJ_T0078513.1 MGP_CASTEiJ_G0030014.1 mouse_genomes_project 6 83302401 83339240 + MGP_CASTEiJ_P0078513 Dctn1 protein_coding protein_coding MGP_CASTEiJ_T0078514.1 MGP_CASTEiJ_G0030014.1 mouse_genomes_project 6 83302454 83325967 + MGP_CASTEiJ_P0078514 Dctn1 protein_coding protein_coding MGP_CASTEiJ_T0078515.1 MGP_CASTEiJ_G0030014.1 mouse_genomes_project 6 83316097 83339093 + MGP_CASTEiJ_P0078515 Dctn1 protein_coding protein_coding MGP_CASTEiJ_T0078516.1 MGP_CASTEiJ_G0030014.1 mouse_genomes_project 6 83316100 83339239 + MGP_CASTEiJ_P0078516 Dctn1 protein_coding protein_coding MGP_CASTEiJ_T0078517.1 MGP_CASTEiJ_G0030014.1 mouse_genomes_project 6 83316124 83325538 + MGP_CASTEiJ_P0078517 Dctn1 protein_coding protein_coding MGP_CASTEiJ_T0078518.1 MGP_CASTEiJ_G0030014.1 mouse_genomes_project 6 83322327 83339240 + MGP_CASTEiJ_P0078518 Dctn1 protein_coding protein_coding MGP_CASTEiJ_T0078519.1 MGP_CASTEiJ_G0030014.1 mouse_genomes_project 6 83324995 83325992 + Dctn1 protein_coding retained_intron MGP_CASTEiJ_T0078520.1 MGP_CASTEiJ_G0030014.1 mouse_genomes_project 6 83330764 83332001 + Dctn1 protein_coding retained_intron MGP_CASTEiJ_T0078521.1 MGP_CASTEiJ_G0030014.1 mouse_genomes_project 6 83330963 83331708 + Dctn1 protein_coding retained_intron MGP_CASTEiJ_T0078522.1 MGP_CASTEiJ_G0030014.1 mouse_genomes_project 6 83331522 83332489 + Dctn1 protein_coding retained_intron MGP_CASTEiJ_T0078523.1 MGP_CASTEiJ_G0030014.1 mouse_genomes_project 6 83333441 83335044 + Dctn1 protein_coding retained_intron MGP_CASTEiJ_T0002020.1 MGP_CASTEiJ_G0001941.1 mouse_genomes_project 6 93813706 93815170 + TEC TEC MGP_CASTEiJ_T0078964.1 MGP_CASTEiJ_G0030100.1 mouse_genomes_project 6 89070006 89154039 - MGP_CASTEiJ_P0078964 Kbtbd12 protein_coding protein_coding MGP_CASTEiJ_T0078965.1 MGP_CASTEiJ_G0030100.1 mouse_genomes_project 6 89070012 89145116 - MGP_CASTEiJ_P0078965 Kbtbd12 protein_coding protein_coding MGP_CASTEiJ_T0078966.1 MGP_CASTEiJ_G0030100.1 mouse_genomes_project 6 89105225 89112127 - Kbtbd12 protein_coding retained_intron MGP_CASTEiJ_T0078967.1 MGP_CASTEiJ_G0030100.1 mouse_genomes_project 6 89140324 89154045 - Kbtbd12 protein_coding retained_intron MGP_CASTEiJ_T0078968.1 MGP_CASTEiJ_G0030100.1 mouse_genomes_project 6 89140603 89145137 - Kbtbd12 protein_coding processed_transcript MGP_CASTEiJ_T0078969.1 MGP_CASTEiJ_G0030100.1 mouse_genomes_project 6 89144050 89154042 - Kbtbd12 protein_coding retained_intron MGP_CASTEiJ_T0078970.1 MGP_CASTEiJ_G0030100.1 mouse_genomes_project 6 89145231 89166447 - MGP_CASTEiJ_P0078970 Kbtbd12 protein_coding protein_coding MGP_CASTEiJ_T0000284.1 MGP_CASTEiJ_G0000233.1 mouse_genomes_project 6 68760616 68761279 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0079340.1 MGP_CASTEiJ_G0030174.1 mouse_genomes_project 6 101780394 101896606 + MGP_CASTEiJ_P0079340 Gxylt2 protein_coding protein_coding MGP_CASTEiJ_T0079341.1 MGP_CASTEiJ_G0030174.1 mouse_genomes_project 6 101780415 101783333 + Gxylt2 protein_coding processed_transcript MGP_CASTEiJ_T0077639.1 MGP_CASTEiJ_G0029808.1 mouse_genomes_project 6 46860960 46865759 + MGP_CASTEiJ_P0077639 Gimap1 protein_coding protein_coding MGP_CASTEiJ_T0077641.1 MGP_CASTEiJ_G0029808.1 mouse_genomes_project 6 46860979 46864588 + MGP_CASTEiJ_P0077641 Gimap1 protein_coding protein_coding MGP_CASTEiJ_T0077642.1 MGP_CASTEiJ_G0029808.1 mouse_genomes_project 6 46860982 46865763 + MGP_CASTEiJ_P0077642 Gimap1 protein_coding protein_coding MGP_CASTEiJ_T0077643.1 MGP_CASTEiJ_G0029808.1 mouse_genomes_project 6 46860993 46861934 + Gimap1 protein_coding retained_intron MGP_CASTEiJ_T0077644.1 MGP_CASTEiJ_G0029808.1 mouse_genomes_project 6 46861013 46863661 + Gimap1 protein_coding retained_intron MGP_CASTEiJ_T0077645.1 MGP_CASTEiJ_G0029808.1 mouse_genomes_project 6 46864046 46865764 + Gimap1 protein_coding retained_intron MGP_CASTEiJ_T0008453.1 MGP_CASTEiJ_G0006845.1 mouse_genomes_project 6 89832888 89834191 - Gm44204 lincRNA lincRNA MGP_CASTEiJ_T0002052.1 MGP_CASTEiJ_G0001973.1 mouse_genomes_project 6 115217844 115220341 - TEC TEC MGP_CASTEiJ_T0078419.1 MGP_CASTEiJ_G0029995.1 mouse_genomes_project 6 83023174 83054365 - MGP_CASTEiJ_P0078419 Sema4f protein_coding protein_coding MGP_CASTEiJ_T0078420.1 MGP_CASTEiJ_G0029995.1 mouse_genomes_project 6 83026137 83029670 - Sema4f protein_coding processed_transcript MGP_CASTEiJ_T0078421.1 MGP_CASTEiJ_G0029995.1 mouse_genomes_project 6 83028304 83054365 - Sema4f protein_coding retained_intron MGP_CASTEiJ_T0078422.1 MGP_CASTEiJ_G0029995.1 mouse_genomes_project 6 83030684 83054141 - MGP_CASTEiJ_P0078422 Sema4f protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0008511.1 MGP_CASTEiJ_G0006894.1 mouse_genomes_project 6 129550568 129562181 - Gm38404 lincRNA lincRNA MGP_CASTEiJ_T0014971.1 MGP_CASTEiJ_G0013134.1 mouse_genomes_project 6 106790640 106790948 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001873.1 MGP_CASTEiJ_G0001794.1 mouse_genomes_project 6 25817242 25820017 + TEC TEC MGP_CASTEiJ_T0078510.1 MGP_CASTEiJ_G0030013.1 mouse_genomes_project 6 83286262 83298335 + MGP_CASTEiJ_P0078510 1700003E16Rik protein_coding protein_coding MGP_CASTEiJ_T0078511.1 MGP_CASTEiJ_G0030013.1 mouse_genomes_project 6 83286359 83298281 + MGP_CASTEiJ_P0078511 1700003E16Rik protein_coding protein_coding MGP_CASTEiJ_T0102410.1 MGP_CASTEiJ_G0039135.1 mouse_genomes_project 6 86533068 86534121 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0078352.1 MGP_CASTEiJ_G0029977.1 mouse_genomes_project 6 73170625 73171720 - MGP_CASTEiJ_P0078352 4931417E11Rik protein_coding protein_coding MGP_CASTEiJ_T0078353.1 MGP_CASTEiJ_G0029977.1 mouse_genomes_project 6 73170633 73171672 - 4931417E11Rik protein_coding processed_transcript MGP_CASTEiJ_T0078354.1 MGP_CASTEiJ_G0029977.1 mouse_genomes_project 6 73170699 73171617 - 4931417E11Rik protein_coding transcribed_processed_pseudogene MGP_CASTEiJ_T0015019.1 MGP_CASTEiJ_G0013182.1 mouse_genomes_project 6 124143072 124143452 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077635.1 MGP_CASTEiJ_G0029807.1 mouse_genomes_project 6 46840103 46846177 + MGP_CASTEiJ_P0077635 Gimap7 protein_coding protein_coding MGP_CASTEiJ_T0077637.1 MGP_CASTEiJ_G0029807.1 mouse_genomes_project 6 46840139 46845280 + MGP_CASTEiJ_P0077637 Gimap7 protein_coding protein_coding MGP_CASTEiJ_T0077638.1 MGP_CASTEiJ_G0029807.1 mouse_genomes_project 6 46840147 46841153 + Gimap7 protein_coding retained_intron MGP_CASTEiJ_T0078279.1 MGP_CASTEiJ_G0029962.1 mouse_genomes_project 6 72007784 72010967 - protein_coding retained_intron MGP_CASTEiJ_T0078280.1 MGP_CASTEiJ_G0029962.1 mouse_genomes_project 6 72008184 72010534 - protein_coding retained_intron MGP_CASTEiJ_T0078281.1 MGP_CASTEiJ_G0029962.1 mouse_genomes_project 6 72008226 72010662 - protein_coding retained_intron MGP_CASTEiJ_T0078282.1 MGP_CASTEiJ_G0029962.1 mouse_genomes_project 6 72008758 72015477 - MGP_CASTEiJ_P0078282 protein_coding protein_coding MGP_CASTEiJ_T0080122.1 MGP_CASTEiJ_G0030313.1 mouse_genomes_project 6 124337486 124357094 - MGP_CASTEiJ_P0080122 Rimklb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080123.1 MGP_CASTEiJ_G0030313.1 mouse_genomes_project 6 124337488 124342929 - Rimklb protein_coding processed_transcript MGP_CASTEiJ_T0080124.1 MGP_CASTEiJ_G0030313.1 mouse_genomes_project 6 124343298 124377345 - MGP_CASTEiJ_P0080124 Rimklb protein_coding protein_coding MGP_CASTEiJ_T0080125.1 MGP_CASTEiJ_G0030313.1 mouse_genomes_project 6 124344454 124357042 - MGP_CASTEiJ_P0080125 Rimklb protein_coding protein_coding MGP_CASTEiJ_T0080126.1 MGP_CASTEiJ_G0030313.1 mouse_genomes_project 6 124345768 124376771 - MGP_CASTEiJ_P0080126 Rimklb protein_coding unknown_likely_coding MGP_CASTEiJ_T0080127.1 MGP_CASTEiJ_G0030313.1 mouse_genomes_project 6 124348821 124363056 - Rimklb protein_coding processed_transcript MGP_CASTEiJ_T0080128.1 MGP_CASTEiJ_G0030313.1 mouse_genomes_project 6 124354679 124377279 - MGP_CASTEiJ_P0080128 Rimklb protein_coding protein_coding MGP_CASTEiJ_T0080129.1 MGP_CASTEiJ_G0030313.1 mouse_genomes_project 6 124363039 124390193 - MGP_CASTEiJ_P0080129 Rimklb protein_coding protein_coding MGP_CASTEiJ_T0010504.1 MGP_CASTEiJ_G0008692.1 mouse_genomes_project 6 124761780 124761841 + Mir7231 miRNA miRNA MGP_CASTEiJ_T0008483.1 MGP_CASTEiJ_G0006868.1 mouse_genomes_project 6 113677071 113678896 + 1700054K19Rik lincRNA lincRNA MGP_CASTEiJ_T0014745.1 MGP_CASTEiJ_G0012908.1 mouse_genomes_project 6 18627461 18627681 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101166.1 MGP_CASTEiJ_G0038079.1 mouse_genomes_project 6 44491529 44491661 - Gm25161 snoRNA snoRNA MGP_CASTEiJ_T0102390.1 MGP_CASTEiJ_G0039115.1 mouse_genomes_project 6 55902769 55904390 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015062.1 MGP_CASTEiJ_G0013225.1 mouse_genomes_project 6 134100292 134100405 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081027.1 MGP_CASTEiJ_G0030532.1 mouse_genomes_project 6 145116368 145121857 + MGP_CASTEiJ_P0081027 Iapp protein_coding protein_coding MGP_CASTEiJ_T0081028.1 MGP_CASTEiJ_G0030532.1 mouse_genomes_project 6 145116392 145117020 + Iapp protein_coding processed_transcript MGP_CASTEiJ_T0004782.1 MGP_CASTEiJ_G0004115.1 mouse_genomes_project 6 26613506 26613905 - Gm17172 antisense antisense MGP_CASTEiJ_T0004956.1 MGP_CASTEiJ_G0004239.1 mouse_genomes_project 6 130742773 130745604 + Gm26770 antisense antisense MGP_CASTEiJ_T0014898.1 MGP_CASTEiJ_G0013061.1 mouse_genomes_project 6 75152049 75159354 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008438.1 MGP_CASTEiJ_G0006835.1 mouse_genomes_project 6 86898870 86903742 - 2310040G24Rik lincRNA lincRNA MGP_CASTEiJ_T0008439.1 MGP_CASTEiJ_G0006835.1 mouse_genomes_project 6 86898870 86903765 - 2310040G24Rik lincRNA lincRNA MGP_CASTEiJ_T0077244.1 MGP_CASTEiJ_G0029689.1 mouse_genomes_project 6 36444193 36641424 - MGP_CASTEiJ_P0077244 Hipk2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077245.1 MGP_CASTEiJ_G0029689.1 mouse_genomes_project 6 36452723 36641247 - MGP_CASTEiJ_P0077245 Hipk2 protein_coding protein_coding MGP_CASTEiJ_T0077246.1 MGP_CASTEiJ_G0029689.1 mouse_genomes_project 6 36453937 36641353 - MGP_CASTEiJ_P0077246 Hipk2 protein_coding protein_coding MGP_CASTEiJ_T0077247.1 MGP_CASTEiJ_G0029689.1 mouse_genomes_project 6 36453942 36641401 - MGP_CASTEiJ_P0077247 Hipk2 protein_coding protein_coding MGP_CASTEiJ_T0077248.1 MGP_CASTEiJ_G0029689.1 mouse_genomes_project 6 36497152 36505251 - Hipk2 protein_coding processed_transcript MGP_CASTEiJ_T0077249.1 MGP_CASTEiJ_G0029689.1 mouse_genomes_project 6 36507435 36583430 - Hipk2 protein_coding retained_intron MGP_CASTEiJ_T0077250.1 MGP_CASTEiJ_G0029689.1 mouse_genomes_project 6 36582990 36602294 - Hipk2 protein_coding retained_intron MGP_CASTEiJ_T0001957.1 MGP_CASTEiJ_G0001878.1 mouse_genomes_project 6 77502665 77504155 - TEC TEC MGP_CASTEiJ_T0002600.1 MGP_CASTEiJ_G0002495.1 mouse_genomes_project 6 39004766 39005241 + MGP_CASTEiJ_P0002600 Trbv14 TR_V_gene TR_V_gene MGP_CASTEiJ_T0078883.1 MGP_CASTEiJ_G0030085.1 mouse_genomes_project 6 88261152 88262848 + MGP_CASTEiJ_P0078883 Gp9 protein_coding protein_coding MGP_CASTEiJ_T0077323.1 MGP_CASTEiJ_G0029704.1 mouse_genomes_project 6 38274618 38310332 - MGP_CASTEiJ_P0077323 E330009J07Rik protein_coding protein_coding MGP_CASTEiJ_T0077324.1 MGP_CASTEiJ_G0029704.1 mouse_genomes_project 6 38274918 38310374 - MGP_CASTEiJ_P0077324 E330009J07Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0077325.1 MGP_CASTEiJ_G0029704.1 mouse_genomes_project 6 38280743 38310330 - MGP_CASTEiJ_P0077325 E330009J07Rik protein_coding protein_coding MGP_CASTEiJ_T0077326.1 MGP_CASTEiJ_G0029704.1 mouse_genomes_project 6 38292716 38305556 - MGP_CASTEiJ_P0077326 E330009J07Rik protein_coding protein_coding MGP_CASTEiJ_T0077327.1 MGP_CASTEiJ_G0029704.1 mouse_genomes_project 6 38297655 38310312 - E330009J07Rik protein_coding retained_intron MGP_CASTEiJ_T0001979.1 MGP_CASTEiJ_G0001900.1 mouse_genomes_project 6 86911809 86914810 + TEC TEC MGP_CASTEiJ_T0077452.1 MGP_CASTEiJ_G0029756.1 mouse_genomes_project 6 40401916 40402870 - MGP_CASTEiJ_P0077452 Olfr455 protein_coding protein_coding MGP_CASTEiJ_T0079935.1 MGP_CASTEiJ_G0030282.1 mouse_genomes_project 6 121200054 121203017 + MGP_CASTEiJ_P0079935 Fbxl14 protein_coding protein_coding MGP_CASTEiJ_T0076328.1 MGP_CASTEiJ_G0029519.1 mouse_genomes_project 6 403403 481247 - MGP_CASTEiJ_P0076328 Calcr protein_coding protein_coding MGP_CASTEiJ_T0076329.1 MGP_CASTEiJ_G0029519.1 mouse_genomes_project 6 403443 482331 - MGP_CASTEiJ_P0076329 Calcr protein_coding protein_coding MGP_CASTEiJ_T0076330.1 MGP_CASTEiJ_G0029519.1 mouse_genomes_project 6 403456 482275 - MGP_CASTEiJ_P0076330 Calcr protein_coding protein_coding MGP_CASTEiJ_T0076331.1 MGP_CASTEiJ_G0029519.1 mouse_genomes_project 6 404545 470224 - MGP_CASTEiJ_P0076331 Calcr protein_coding protein_coding MGP_CASTEiJ_T0076332.1 MGP_CASTEiJ_G0029519.1 mouse_genomes_project 6 404545 470224 - MGP_CASTEiJ_P0076332 Calcr protein_coding protein_coding MGP_CASTEiJ_T0079827.1 MGP_CASTEiJ_G0030264.1 mouse_genomes_project 6 118732054 118738606 + MGP_CASTEiJ_P0079827 Cxcl12 protein_coding protein_coding MGP_CASTEiJ_T0079828.1 MGP_CASTEiJ_G0030264.1 mouse_genomes_project 6 118732093 118744897 + MGP_CASTEiJ_P0079828 Cxcl12 protein_coding protein_coding MGP_CASTEiJ_T0079829.1 MGP_CASTEiJ_G0030264.1 mouse_genomes_project 6 118732096 118739661 + Cxcl12 protein_coding retained_intron MGP_CASTEiJ_T0079830.1 MGP_CASTEiJ_G0030264.1 mouse_genomes_project 6 118732096 118744898 + MGP_CASTEiJ_P0079830 Cxcl12 protein_coding protein_coding MGP_CASTEiJ_T0079831.1 MGP_CASTEiJ_G0030264.1 mouse_genomes_project 6 118732099 118749718 + MGP_CASTEiJ_P0079831 Cxcl12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0080718.1 MGP_CASTEiJ_G0030455.1 mouse_genomes_project 6 135088238 135089130 + MGP_CASTEiJ_P0080718 Tas2r120 protein_coding protein_coding MGP_CASTEiJ_T0008480.1 MGP_CASTEiJ_G0006865.1 mouse_genomes_project 6 106925907 106930496 - Gm15631 lincRNA lincRNA MGP_CASTEiJ_T0001983.1 MGP_CASTEiJ_G0001904.1 mouse_genomes_project 6 87299397 87301447 + TEC TEC MGP_CASTEiJ_T0004840.1 MGP_CASTEiJ_G0004162.1 mouse_genomes_project 6 71742309 71745031 - 4933431G14Rik antisense antisense MGP_CASTEiJ_T0004841.1 MGP_CASTEiJ_G0004162.1 mouse_genomes_project 6 71742309 71745298 - 4933431G14Rik antisense antisense MGP_CASTEiJ_T0000190.1 MGP_CASTEiJ_G0000145.1 mouse_genomes_project 6 69369570 69370124 - MGP_CASTEiJ_P0000190 Igkv5-39 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000191.1 MGP_CASTEiJ_G0000145.1 mouse_genomes_project 6 69369570 69369857 - MGP_CASTEiJ_P0000191 Igkv5-39 IG_V_gene IG_V_gene MGP_CASTEiJ_T0078415.1 MGP_CASTEiJ_G0029994.1 mouse_genomes_project 6 82804307 82866630 - MGP_CASTEiJ_P0078415 Hk2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0078416.1 MGP_CASTEiJ_G0029994.1 mouse_genomes_project 6 82806571 82866591 - MGP_CASTEiJ_P0078416 Hk2 protein_coding protein_coding MGP_CASTEiJ_T0078417.1 MGP_CASTEiJ_G0029994.1 mouse_genomes_project 6 82806608 82807884 - Hk2 protein_coding processed_transcript MGP_CASTEiJ_T0078418.1 MGP_CASTEiJ_G0029994.1 mouse_genomes_project 6 82849331 82865596 - MGP_CASTEiJ_P0078418 Hk2 protein_coding protein_coding MGP_CASTEiJ_T0076387.1 MGP_CASTEiJ_G0029529.1 mouse_genomes_project 6 1942304 1967840 - MGP_CASTEiJ_P0076387 Pon1 protein_coding protein_coding MGP_CASTEiJ_T0076388.1 MGP_CASTEiJ_G0029529.1 mouse_genomes_project 6 1942709 1967678 - MGP_CASTEiJ_P0076388 Pon1 protein_coding protein_coding MGP_CASTEiJ_T0076389.1 MGP_CASTEiJ_G0029529.1 mouse_genomes_project 6 1945960 1967678 - MGP_CASTEiJ_P0076389 Pon1 protein_coding protein_coding MGP_CASTEiJ_T0076390.1 MGP_CASTEiJ_G0029529.1 mouse_genomes_project 6 1959390 1967657 - Pon1 protein_coding retained_intron MGP_CASTEiJ_T0001882.1 MGP_CASTEiJ_G0001803.1 mouse_genomes_project 6 30914236 30915933 + TEC TEC MGP_CASTEiJ_T0080629.1 MGP_CASTEiJ_G0030423.1 mouse_genomes_project 6 131806989 131816592 - MGP_CASTEiJ_P0080629 4922502D21Rik protein_coding protein_coding MGP_CASTEiJ_T0080630.1 MGP_CASTEiJ_G0030423.1 mouse_genomes_project 6 131807672 131811520 - MGP_CASTEiJ_P0080630 4922502D21Rik protein_coding protein_coding MGP_CASTEiJ_T0102402.1 MGP_CASTEiJ_G0039127.1 mouse_genomes_project 6 60167285 60167550 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015052.1 MGP_CASTEiJ_G0013215.1 mouse_genomes_project 6 131365621 131366111 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076534.1 MGP_CASTEiJ_G0029561.1 mouse_genomes_project 6 11528910 11572342 - MGP_CASTEiJ_P0076534 Ppp1r3a protein_coding protein_coding MGP_CASTEiJ_T0002598.1 MGP_CASTEiJ_G0002493.1 mouse_genomes_project 6 38992072 38992509 + MGP_CASTEiJ_P0002598 Trbv13-2 TR_V_gene TR_V_gene MGP_CASTEiJ_T0079336.1 MGP_CASTEiJ_G0030173.1 mouse_genomes_project 6 101633392 101740736 - MGP_CASTEiJ_P0079336 Shq1 protein_coding protein_coding MGP_CASTEiJ_T0079337.1 MGP_CASTEiJ_G0030173.1 mouse_genomes_project 6 101637586 101740736 - MGP_CASTEiJ_P0079337 Shq1 protein_coding protein_coding MGP_CASTEiJ_T0079338.1 MGP_CASTEiJ_G0030173.1 mouse_genomes_project 6 101637587 101740718 - MGP_CASTEiJ_P0079338 Shq1 protein_coding protein_coding MGP_CASTEiJ_T0079339.1 MGP_CASTEiJ_G0030173.1 mouse_genomes_project 6 101732299 101740710 - Shq1 protein_coding processed_transcript MGP_CASTEiJ_T0000294.1 MGP_CASTEiJ_G0000243.1 mouse_genomes_project 6 69399273 69399555 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0008335.1 MGP_CASTEiJ_G0006759.1 mouse_genomes_project 6 29027402 29182870 + Gm43154 lincRNA lincRNA MGP_CASTEiJ_T0008336.1 MGP_CASTEiJ_G0006759.1 mouse_genomes_project 6 29027480 29183133 + Gm43154 lincRNA lincRNA MGP_CASTEiJ_T0008339.1 MGP_CASTEiJ_G0006759.1 mouse_genomes_project 6 29095600 29183135 + Gm43154 lincRNA lincRNA MGP_CASTEiJ_T0081162.1 MGP_CASTEiJ_G0030553.1 mouse_genomes_project 6 148655981 148661699 + MGP_CASTEiJ_P0081162 Tuba3b protein_coding protein_coding MGP_CASTEiJ_T0014923.1 MGP_CASTEiJ_G0013086.1 mouse_genomes_project 6 85374454 85375031 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011298.1 MGP_CASTEiJ_G0009486.1 mouse_genomes_project 6 14631077 14631263 + Gm28008 misc_RNA misc_RNA MGP_CASTEiJ_T0080870.1 MGP_CASTEiJ_G0030503.1 mouse_genomes_project 6 139478208 139495419 - MGP_CASTEiJ_P0080870 Erp27 protein_coding protein_coding MGP_CASTEiJ_T0080871.1 MGP_CASTEiJ_G0030503.1 mouse_genomes_project 6 139480671 139495419 - Erp27 protein_coding retained_intron MGP_CASTEiJ_T0080872.1 MGP_CASTEiJ_G0030503.1 mouse_genomes_project 6 139492837 139495379 - Erp27 protein_coding retained_intron MGP_CASTEiJ_T0079000.1 MGP_CASTEiJ_G0030104.1 mouse_genomes_project 6 89425174 89440501 - MGP_CASTEiJ_P0079000 Mcm2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079001.1 MGP_CASTEiJ_G0030104.1 mouse_genomes_project 6 89425181 89440597 - MGP_CASTEiJ_P0079001 Mcm2 protein_coding protein_coding MGP_CASTEiJ_T0079002.1 MGP_CASTEiJ_G0030104.1 mouse_genomes_project 6 89430271 89433759 - Mcm2 protein_coding retained_intron MGP_CASTEiJ_T0079003.1 MGP_CASTEiJ_G0030104.1 mouse_genomes_project 6 89431720 89435033 - MGP_CASTEiJ_P0079003 Mcm2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079004.1 MGP_CASTEiJ_G0030104.1 mouse_genomes_project 6 89434889 89440518 - Mcm2 protein_coding processed_transcript MGP_CASTEiJ_T0079005.1 MGP_CASTEiJ_G0030104.1 mouse_genomes_project 6 89435000 89440505 - MGP_CASTEiJ_P0079005 Mcm2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079006.1 MGP_CASTEiJ_G0030104.1 mouse_genomes_project 6 89435016 89435575 - Mcm2 protein_coding retained_intron MGP_CASTEiJ_T0079007.1 MGP_CASTEiJ_G0030104.1 mouse_genomes_project 6 89438733 89440494 - Mcm2 protein_coding retained_intron MGP_CASTEiJ_T0080259.1 MGP_CASTEiJ_G0030347.1 mouse_genomes_project 6 126845394 126859269 - MGP_CASTEiJ_P0080259 Atn1 protein_coding protein_coding MGP_CASTEiJ_T0080260.1 MGP_CASTEiJ_G0030347.1 mouse_genomes_project 6 126847995 126848449 - Atn1 protein_coding processed_transcript MGP_CASTEiJ_T0080261.1 MGP_CASTEiJ_G0030347.1 mouse_genomes_project 6 126850542 126858880 - MGP_CASTEiJ_P0080261 Atn1 protein_coding protein_coding MGP_CASTEiJ_T0014708.1 MGP_CASTEiJ_G0012871.1 mouse_genomes_project 6 3047256 3047628 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080882.1 MGP_CASTEiJ_G0030506.1 mouse_genomes_project 6 139637307 139762336 - MGP_CASTEiJ_P0080882 Rerg protein_coding protein_coding MGP_CASTEiJ_T0080883.1 MGP_CASTEiJ_G0030506.1 mouse_genomes_project 6 139637313 139761566 - MGP_CASTEiJ_P0080883 Rerg protein_coding protein_coding MGP_CASTEiJ_T0080884.1 MGP_CASTEiJ_G0030506.1 mouse_genomes_project 6 139638586 139761519 - MGP_CASTEiJ_P0080884 Rerg protein_coding protein_coding MGP_CASTEiJ_T0080885.1 MGP_CASTEiJ_G0030506.1 mouse_genomes_project 6 139638876 139729131 - MGP_CASTEiJ_P0080885 Rerg protein_coding protein_coding MGP_CASTEiJ_T0080886.1 MGP_CASTEiJ_G0030506.1 mouse_genomes_project 6 139707219 139761542 - MGP_CASTEiJ_P0080886 Rerg protein_coding protein_coding MGP_CASTEiJ_T0001901.1 MGP_CASTEiJ_G0001822.1 mouse_genomes_project 6 43290481 43292755 + TEC TEC MGP_CASTEiJ_T0081167.1 MGP_CASTEiJ_G0030555.1 mouse_genomes_project 6 148900686 148908062 - MGP_CASTEiJ_P0081167 Bhlhe41 protein_coding protein_coding MGP_CASTEiJ_T0081168.1 MGP_CASTEiJ_G0030555.1 mouse_genomes_project 6 148905981 148907806 - MGP_CASTEiJ_P0081168 Bhlhe41 protein_coding protein_coding MGP_CASTEiJ_T0081169.1 MGP_CASTEiJ_G0030555.1 mouse_genomes_project 6 148907163 148907856 - Bhlhe41 protein_coding retained_intron MGP_CASTEiJ_T0011323.1 MGP_CASTEiJ_G0009511.1 mouse_genomes_project 6 83761743 83762066 - Gm24990 misc_RNA misc_RNA MGP_CASTEiJ_T0081256.1 MGP_CASTEiJ_G0030572.1 mouse_genomes_project 6 150322750 150337229 - MGP_CASTEiJ_P0081256 Pthlh protein_coding protein_coding MGP_CASTEiJ_T0081257.1 MGP_CASTEiJ_G0030572.1 mouse_genomes_project 6 150322758 150337245 - MGP_CASTEiJ_P0081257 Pthlh protein_coding protein_coding MGP_CASTEiJ_T0004806.1 MGP_CASTEiJ_G0004136.1 mouse_genomes_project 6 38830503 38830801 + Gm29588 antisense antisense MGP_CASTEiJ_T0079832.1 MGP_CASTEiJ_G0030265.1 mouse_genomes_project 6 119430214 119433555 + Zfp637 protein_coding retained_intron MGP_CASTEiJ_T0079833.1 MGP_CASTEiJ_G0030265.1 mouse_genomes_project 6 119430214 119434182 + MGP_CASTEiJ_P0079833 Zfp637 protein_coding protein_coding MGP_CASTEiJ_T0079834.1 MGP_CASTEiJ_G0030265.1 mouse_genomes_project 6 119430215 119434489 + MGP_CASTEiJ_P0079834 Zfp637 protein_coding protein_coding MGP_CASTEiJ_T0079835.1 MGP_CASTEiJ_G0030265.1 mouse_genomes_project 6 119430276 119434925 + MGP_CASTEiJ_P0079835 Zfp637 protein_coding protein_coding MGP_CASTEiJ_T0079836.1 MGP_CASTEiJ_G0030265.1 mouse_genomes_project 6 119430280 119434926 + MGP_CASTEiJ_P0079836 Zfp637 protein_coding protein_coding MGP_CASTEiJ_T0079837.1 MGP_CASTEiJ_G0030265.1 mouse_genomes_project 6 119430302 119434383 + MGP_CASTEiJ_P0079837 Zfp637 protein_coding protein_coding MGP_CASTEiJ_T0079838.1 MGP_CASTEiJ_G0030265.1 mouse_genomes_project 6 119430302 119434383 + MGP_CASTEiJ_P0079838 Zfp637 protein_coding protein_coding MGP_CASTEiJ_T0079839.1 MGP_CASTEiJ_G0030265.1 mouse_genomes_project 6 119430315 119434926 + MGP_CASTEiJ_P0079839 Zfp637 protein_coding protein_coding MGP_CASTEiJ_T0079840.1 MGP_CASTEiJ_G0030265.1 mouse_genomes_project 6 119430315 119434383 + MGP_CASTEiJ_P0079840 Zfp637 protein_coding protein_coding MGP_CASTEiJ_T0079841.1 MGP_CASTEiJ_G0030265.1 mouse_genomes_project 6 119432289 119434545 + Zfp637 protein_coding retained_intron MGP_CASTEiJ_T0010517.1 MGP_CASTEiJ_G0008705.1 mouse_genomes_project 6 139349901 139350012 - Gm44498 miRNA miRNA MGP_CASTEiJ_T0080508.1 MGP_CASTEiJ_G0030393.1 mouse_genomes_project 6 129249640 129263102 + MGP_CASTEiJ_P0080508 Fgf6 protein_coding protein_coding MGP_CASTEiJ_T0004775.1 MGP_CASTEiJ_G0004109.1 mouse_genomes_project 6 14106273 14297866 - Gm15581 antisense antisense MGP_CASTEiJ_T0076339.1 MGP_CASTEiJ_G0029523.1 mouse_genomes_project 6 808546 822627 - MGP_CASTEiJ_P0076339 Bet1 protein_coding protein_coding MGP_CASTEiJ_T0076340.1 MGP_CASTEiJ_G0029523.1 mouse_genomes_project 6 809367 822574 - Bet1 protein_coding processed_transcript MGP_CASTEiJ_T0076341.1 MGP_CASTEiJ_G0029523.1 mouse_genomes_project 6 809521 815061 - Bet1 protein_coding retained_intron MGP_CASTEiJ_T0076342.1 MGP_CASTEiJ_G0029523.1 mouse_genomes_project 6 815303 822627 - Bet1 protein_coding retained_intron MGP_CASTEiJ_T0076343.1 MGP_CASTEiJ_G0029523.1 mouse_genomes_project 6 817159 822585 - Bet1 protein_coding processed_transcript MGP_CASTEiJ_T0076344.1 MGP_CASTEiJ_G0029523.1 mouse_genomes_project 6 817182 822585 - Bet1 protein_coding processed_transcript MGP_CASTEiJ_T0014963.1 MGP_CASTEiJ_G0013126.1 mouse_genomes_project 6 102775352 102775817 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101161.1 MGP_CASTEiJ_G0038074.1 mouse_genomes_project 6 33529311 33529446 + Gm23273 snoRNA snoRNA MGP_CASTEiJ_T0076571.1 MGP_CASTEiJ_G0029566.1 mouse_genomes_project 6 14181361 14190516 + MGP_CASTEiJ_P0076571 Cav2 protein_coding protein_coding MGP_CASTEiJ_T0076572.1 MGP_CASTEiJ_G0029566.1 mouse_genomes_project 6 14181503 14182855 + MGP_CASTEiJ_P0076572 Cav2 protein_coding protein_coding MGP_CASTEiJ_T0076573.1 MGP_CASTEiJ_G0029566.1 mouse_genomes_project 6 14181535 14187606 + MGP_CASTEiJ_P0076573 Cav2 protein_coding protein_coding MGP_CASTEiJ_T0002030.1 MGP_CASTEiJ_G0001951.1 mouse_genomes_project 6 101308616 101309506 - TEC TEC MGP_CASTEiJ_T0014772.1 MGP_CASTEiJ_G0012935.1 mouse_genomes_project 6 36000398 36000822 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014853.1 MGP_CASTEiJ_G0013016.1 mouse_genomes_project 6 64590585 64591010 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101188.1 MGP_CASTEiJ_G0038101.1 mouse_genomes_project 6 85412493 85412609 - Gm22893 snoRNA snoRNA MGP_CASTEiJ_T0015076.1 MGP_CASTEiJ_G0013239.1 mouse_genomes_project 6 138862507 138863701 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002111.1 MGP_CASTEiJ_G0002031.1 mouse_genomes_project 6 149280096 149282464 - TEC TEC MGP_CASTEiJ_T0076591.1 MGP_CASTEiJ_G0029569.1 mouse_genomes_project 6 14559334 14582495 + Capza2 protein_coding processed_transcript MGP_CASTEiJ_T0076592.1 MGP_CASTEiJ_G0029569.1 mouse_genomes_project 6 14560087 14593000 + MGP_CASTEiJ_P0076592 Capza2 protein_coding protein_coding MGP_CASTEiJ_T0076593.1 MGP_CASTEiJ_G0029569.1 mouse_genomes_project 6 14560139 14585608 + Capza2 protein_coding retained_intron MGP_CASTEiJ_T0076594.1 MGP_CASTEiJ_G0029569.1 mouse_genomes_project 6 14560146 14582445 + Capza2 protein_coding processed_transcript MGP_CASTEiJ_T0076595.1 MGP_CASTEiJ_G0029569.1 mouse_genomes_project 6 14560214 14591622 + MGP_CASTEiJ_P0076595 Capza2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076596.1 MGP_CASTEiJ_G0029569.1 mouse_genomes_project 6 14560217 14586809 + MGP_CASTEiJ_P0076596 Capza2 protein_coding protein_coding MGP_CASTEiJ_T0076597.1 MGP_CASTEiJ_G0029569.1 mouse_genomes_project 6 14586604 14591714 + Capza2 protein_coding retained_intron MGP_CASTEiJ_T0077977.1 MGP_CASTEiJ_G0029886.1 mouse_genomes_project 6 55760579 55761514 + MGP_CASTEiJ_P0077977 Vmn1r12 protein_coding protein_coding MGP_CASTEiJ_T0076647.1 MGP_CASTEiJ_G0029578.1 mouse_genomes_project 6 18873839 18991319 - MGP_CASTEiJ_P0076647 Tspan12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076648.1 MGP_CASTEiJ_G0029578.1 mouse_genomes_project 6 18912523 18991601 - MGP_CASTEiJ_P0076648 Tspan12 protein_coding protein_coding MGP_CASTEiJ_T0076649.1 MGP_CASTEiJ_G0029578.1 mouse_genomes_project 6 18912523 18992017 - MGP_CASTEiJ_P0076649 Tspan12 protein_coding protein_coding MGP_CASTEiJ_T0076650.1 MGP_CASTEiJ_G0029578.1 mouse_genomes_project 6 18940473 18991494 - MGP_CASTEiJ_P0076650 Tspan12 protein_coding protein_coding MGP_CASTEiJ_T0076651.1 MGP_CASTEiJ_G0029578.1 mouse_genomes_project 6 18944828 18991427 - MGP_CASTEiJ_P0076651 Tspan12 protein_coding protein_coding MGP_CASTEiJ_T0076652.1 MGP_CASTEiJ_G0029578.1 mouse_genomes_project 6 18977212 18991682 - MGP_CASTEiJ_P0076652 Tspan12 protein_coding protein_coding MGP_CASTEiJ_T0076653.1 MGP_CASTEiJ_G0029578.1 mouse_genomes_project 6 18990526 18991341 - MGP_CASTEiJ_P0076653 Tspan12 protein_coding protein_coding MGP_CASTEiJ_T0001952.1 MGP_CASTEiJ_G0001873.1 mouse_genomes_project 6 77279803 77281987 - TEC TEC MGP_CASTEiJ_T0077712.1 MGP_CASTEiJ_G0029825.1 mouse_genomes_project 6 48287976 48382906 + MGP_CASTEiJ_P0077712 Mpp6 protein_coding protein_coding MGP_CASTEiJ_T0077713.1 MGP_CASTEiJ_G0029825.1 mouse_genomes_project 6 48287984 48382895 + MGP_CASTEiJ_P0077713 Mpp6 protein_coding protein_coding MGP_CASTEiJ_T0077714.1 MGP_CASTEiJ_G0029825.1 mouse_genomes_project 6 48288013 48383247 + MGP_CASTEiJ_P0077714 Mpp6 protein_coding protein_coding MGP_CASTEiJ_T0077715.1 MGP_CASTEiJ_G0029825.1 mouse_genomes_project 6 48288015 48293485 + Mpp6 protein_coding retained_intron MGP_CASTEiJ_T0077716.1 MGP_CASTEiJ_G0029825.1 mouse_genomes_project 6 48288118 48382732 + MGP_CASTEiJ_P0077716 Mpp6 protein_coding protein_coding MGP_CASTEiJ_T0077717.1 MGP_CASTEiJ_G0029825.1 mouse_genomes_project 6 48288142 48347960 + MGP_CASTEiJ_P0077717 Mpp6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077718.1 MGP_CASTEiJ_G0029825.1 mouse_genomes_project 6 48290515 48363498 + MGP_CASTEiJ_P0077718 Mpp6 protein_coding protein_coding MGP_CASTEiJ_T0077719.1 MGP_CASTEiJ_G0029825.1 mouse_genomes_project 6 48363184 48381140 + Mpp6 protein_coding processed_transcript MGP_CASTEiJ_T0077722.1 MGP_CASTEiJ_G0029825.1 mouse_genomes_project 6 48377299 48382635 + Mpp6 protein_coding retained_intron MGP_CASTEiJ_T0077723.1 MGP_CASTEiJ_G0029825.1 mouse_genomes_project 6 48380199 48382692 + MGP_CASTEiJ_P0077723 Mpp6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079241.1 MGP_CASTEiJ_G0030155.1 mouse_genomes_project 6 96369837 96615513 - MGP_CASTEiJ_P0079241 Suclg2 protein_coding protein_coding MGP_CASTEiJ_T0079242.1 MGP_CASTEiJ_G0030155.1 mouse_genomes_project 6 96464547 96542628 - Suclg2 protein_coding processed_transcript MGP_CASTEiJ_T0079243.1 MGP_CASTEiJ_G0030155.1 mouse_genomes_project 6 96492684 96555715 - MGP_CASTEiJ_P0079243 Suclg2 protein_coding protein_coding MGP_CASTEiJ_T0079244.1 MGP_CASTEiJ_G0030155.1 mouse_genomes_project 6 96553041 96615538 - Suclg2 protein_coding retained_intron MGP_CASTEiJ_T0079045.1 MGP_CASTEiJ_G0030109.1 mouse_genomes_project 6 90215506 90249488 + MGP_CASTEiJ_P0079045 Txnrd3 protein_coding protein_coding MGP_CASTEiJ_T0079046.1 MGP_CASTEiJ_G0030109.1 mouse_genomes_project 6 90215506 90249488 + MGP_CASTEiJ_P0079046 Txnrd3 protein_coding protein_coding MGP_CASTEiJ_T0077196.1 MGP_CASTEiJ_G0029679.1 mouse_genomes_project 6 35821661 35827962 + MGP_CASTEiJ_P0077196 Tmem213 protein_coding protein_coding MGP_CASTEiJ_T0080684.1 MGP_CASTEiJ_G0030439.1 mouse_genomes_project 6 132261040 132272146 - MGP_CASTEiJ_P0080684 Klri2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0010506.1 MGP_CASTEiJ_G0008694.1 mouse_genomes_project 6 126817927 126817996 - Mir200c miRNA miRNA MGP_CASTEiJ_T0014797.1 MGP_CASTEiJ_G0012960.1 mouse_genomes_project 6 46782316 46782774 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010497.1 MGP_CASTEiJ_G0008685.1 mouse_genomes_project 6 117300922 117300985 + Mir7660 miRNA miRNA MGP_CASTEiJ_T0002613.1 MGP_CASTEiJ_G0002505.1 mouse_genomes_project 6 39168092 39168709 + MGP_CASTEiJ_P0002613 Trbv30 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002614.1 MGP_CASTEiJ_G0002505.1 mouse_genomes_project 6 39168092 39168709 + MGP_CASTEiJ_P0002614 Trbv30 TR_V_gene TR_V_gene MGP_CASTEiJ_T0001939.1 MGP_CASTEiJ_G0001860.1 mouse_genomes_project 6 71405241 71406492 + TEC TEC MGP_CASTEiJ_T0078714.1 MGP_CASTEiJ_G0030051.1 mouse_genomes_project 6 86161547 86163242 - MGP_CASTEiJ_P0078714 Nat8 protein_coding protein_coding MGP_CASTEiJ_T0008550.1 MGP_CASTEiJ_G0006919.1 mouse_genomes_project 6 148778433 148786009 - Gm15704 lincRNA lincRNA MGP_CASTEiJ_T0076973.1 MGP_CASTEiJ_G0029640.1 mouse_genomes_project 6 28033179 28039339 + MGP_CASTEiJ_P0076973 Cpa1 protein_coding protein_coding MGP_CASTEiJ_T0076974.1 MGP_CASTEiJ_G0029640.1 mouse_genomes_project 6 28034298 28035850 + Cpa1 protein_coding retained_intron MGP_CASTEiJ_T0080664.1 MGP_CASTEiJ_G0030433.1 mouse_genomes_project 6 132099821 132106190 + MGP_CASTEiJ_P0080664 Klrd1 protein_coding protein_coding MGP_CASTEiJ_T0080665.1 MGP_CASTEiJ_G0030433.1 mouse_genomes_project 6 132099821 132107818 + MGP_CASTEiJ_P0080665 Klrd1 protein_coding protein_coding MGP_CASTEiJ_T0080666.1 MGP_CASTEiJ_G0030433.1 mouse_genomes_project 6 132099849 132107813 + MGP_CASTEiJ_P0080666 Klrd1 protein_coding protein_coding MGP_CASTEiJ_T0080667.1 MGP_CASTEiJ_G0030433.1 mouse_genomes_project 6 132099864 132106334 + MGP_CASTEiJ_P0080667 Klrd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080668.1 MGP_CASTEiJ_G0030433.1 mouse_genomes_project 6 132103171 132106174 + MGP_CASTEiJ_P0080668 Klrd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080669.1 MGP_CASTEiJ_G0030433.1 mouse_genomes_project 6 132104224 132106173 + Klrd1 protein_coding retained_intron MGP_CASTEiJ_T0002484.1 MGP_CASTEiJ_G0002395.1 mouse_genomes_project 6 39367829 39367877 + MGP_CASTEiJ_P0002484 Trbj1-1 TR_J_gene TR_J_gene MGP_CASTEiJ_T0008391.1 MGP_CASTEiJ_G0006796.1 mouse_genomes_project 6 50631826 50636589 + Hottip lincRNA lincRNA MGP_CASTEiJ_T0008392.1 MGP_CASTEiJ_G0006796.1 mouse_genomes_project 6 50631835 50636066 + Hottip lincRNA lincRNA MGP_CASTEiJ_T0077474.1 MGP_CASTEiJ_G0029765.1 mouse_genomes_project 6 40780125 40781058 + MGP_CASTEiJ_P0077474 Olfr448 protein_coding protein_coding MGP_CASTEiJ_T0098637.1 MGP_CASTEiJ_G0035568.1 mouse_genomes_project 6 142902738 142902849 - Gm24174 rRNA rRNA MGP_CASTEiJ_T0001863.1 MGP_CASTEiJ_G0001784.1 mouse_genomes_project 6 15393990 15395598 - TEC TEC MGP_CASTEiJ_T0002045.1 MGP_CASTEiJ_G0001966.1 mouse_genomes_project 6 109786791 109789021 - TEC TEC MGP_CASTEiJ_T0004822.1 MGP_CASTEiJ_G0004147.1 mouse_genomes_project 6 50546466 50553375 + Gm29430 antisense antisense MGP_CASTEiJ_T0004823.1 MGP_CASTEiJ_G0004147.1 mouse_genomes_project 6 50547082 50553302 + Gm29430 antisense antisense MGP_CASTEiJ_T0078270.1 MGP_CASTEiJ_G0029960.1 mouse_genomes_project 6 71992003 71995912 + 0610030E20Rik protein_coding retained_intron MGP_CASTEiJ_T0078271.1 MGP_CASTEiJ_G0029960.1 mouse_genomes_project 6 71992012 71993868 + 0610030E20Rik protein_coding retained_intron MGP_CASTEiJ_T0078272.1 MGP_CASTEiJ_G0029960.1 mouse_genomes_project 6 71992020 71999820 + MGP_CASTEiJ_P0078272 0610030E20Rik protein_coding protein_coding MGP_CASTEiJ_T0078273.1 MGP_CASTEiJ_G0029960.1 mouse_genomes_project 6 71992053 71995313 + 0610030E20Rik protein_coding retained_intron MGP_CASTEiJ_T0000188.1 MGP_CASTEiJ_G0000143.1 mouse_genomes_project 6 69116872 69117392 - MGP_CASTEiJ_P0000188 Igkv4-90 IG_V_gene IG_V_gene MGP_CASTEiJ_T0014925.1 MGP_CASTEiJ_G0013088.1 mouse_genomes_project 6 85833659 85834128 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014764.1 MGP_CASTEiJ_G0012927.1 mouse_genomes_project 6 30843824 30847139 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078867.1 MGP_CASTEiJ_G0030080.1 mouse_genomes_project 6 87885110 87893428 + MGP_CASTEiJ_P0078867 Bmp10 protein_coding protein_coding MGP_CASTEiJ_T0001916.1 MGP_CASTEiJ_G0001837.1 mouse_genomes_project 6 50623237 50624479 - TEC TEC MGP_CASTEiJ_T0004884.1 MGP_CASTEiJ_G0004186.1 mouse_genomes_project 6 88396768 88402359 - Gm26636 antisense antisense MGP_CASTEiJ_T0008502.1 MGP_CASTEiJ_G0006885.1 mouse_genomes_project 6 122353718 122361687 + 1700072O05Rik lincRNA lincRNA MGP_CASTEiJ_T0008530.1 MGP_CASTEiJ_G0006905.1 mouse_genomes_project 6 137704139 137712434 - Gm44275 lincRNA lincRNA MGP_CASTEiJ_T0080229.1 MGP_CASTEiJ_G0030342.1 mouse_genomes_project 6 126803592 126807924 - Emg1 protein_coding retained_intron MGP_CASTEiJ_T0080230.1 MGP_CASTEiJ_G0030342.1 mouse_genomes_project 6 126803888 126811704 - MGP_CASTEiJ_P0080230 Emg1 protein_coding protein_coding MGP_CASTEiJ_T0080231.1 MGP_CASTEiJ_G0030342.1 mouse_genomes_project 6 126803889 126805167 - Emg1 protein_coding processed_transcript MGP_CASTEiJ_T0080232.1 MGP_CASTEiJ_G0030342.1 mouse_genomes_project 6 126803965 126811595 - Emg1 protein_coding retained_intron MGP_CASTEiJ_T0080233.1 MGP_CASTEiJ_G0030342.1 mouse_genomes_project 6 126804458 126811667 - Emg1 protein_coding retained_intron MGP_CASTEiJ_T0080234.1 MGP_CASTEiJ_G0030342.1 mouse_genomes_project 6 126804667 126811583 - MGP_CASTEiJ_P0080234 Emg1 protein_coding protein_coding MGP_CASTEiJ_T0015032.1 MGP_CASTEiJ_G0013195.1 mouse_genomes_project 6 127261599 127267033 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001890.1 MGP_CASTEiJ_G0001811.1 mouse_genomes_project 6 38777038 38778377 - TEC TEC MGP_CASTEiJ_T0102411.1 MGP_CASTEiJ_G0039136.1 mouse_genomes_project 6 86751576 86752716 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0077367.1 MGP_CASTEiJ_G0029725.1 mouse_genomes_project 6 39260747 39264696 - MGP_CASTEiJ_P0077367 protein_coding protein_coding MGP_CASTEiJ_T0008563.1 MGP_CASTEiJ_G0006928.1 mouse_genomes_project 6 151774021 151792543 - 4930528G23Rik lincRNA lincRNA MGP_CASTEiJ_T0076429.1 MGP_CASTEiJ_G0029538.1 mouse_genomes_project 6 3713059 3717344 - MGP_CASTEiJ_P0076429 Dlx5 protein_coding protein_coding MGP_CASTEiJ_T0076430.1 MGP_CASTEiJ_G0029538.1 mouse_genomes_project 6 3713059 3717327 - MGP_CASTEiJ_P0076430 Dlx5 protein_coding protein_coding MGP_CASTEiJ_T0076431.1 MGP_CASTEiJ_G0029538.1 mouse_genomes_project 6 3715942 3717341 - Dlx5 protein_coding retained_intron MGP_CASTEiJ_T0077156.1 MGP_CASTEiJ_G0029670.1 mouse_genomes_project 6 33056377 33089300 - MGP_CASTEiJ_P0077156 Mtpn protein_coding protein_coding MGP_CASTEiJ_T0077157.1 MGP_CASTEiJ_G0029670.1 mouse_genomes_project 6 33070338 33089211 - MGP_CASTEiJ_P0077157 Mtpn protein_coding protein_coding MGP_CASTEiJ_T0004831.1 MGP_CASTEiJ_G0004153.1 mouse_genomes_project 6 53807353 53818866 - Gm44073 antisense antisense MGP_CASTEiJ_T0098627.1 MGP_CASTEiJ_G0035558.1 mouse_genomes_project 6 27723246 27723342 - Gm25625 rRNA rRNA MGP_CASTEiJ_T0079206.1 MGP_CASTEiJ_G0030148.1 mouse_genomes_project 6 93544062 93573205 + MGP_CASTEiJ_P0079206 A730049H05Rik protein_coding protein_coding MGP_CASTEiJ_T0079207.1 MGP_CASTEiJ_G0030148.1 mouse_genomes_project 6 93556580 93576862 + A730049H05Rik protein_coding processed_transcript MGP_CASTEiJ_T0101162.1 MGP_CASTEiJ_G0038075.1 mouse_genomes_project 6 36782440 36782566 + Gm23010 snoRNA snoRNA MGP_CASTEiJ_T0004899.1 MGP_CASTEiJ_G0004197.1 mouse_genomes_project 6 92694636 92698362 - 4930466I24Rik antisense antisense MGP_CASTEiJ_T0080747.1 MGP_CASTEiJ_G0030476.1 mouse_genomes_project 6 136701641 136743037 + MGP_CASTEiJ_P0080747 protein_coding protein_coding MGP_CASTEiJ_T0080748.1 MGP_CASTEiJ_G0030476.1 mouse_genomes_project 6 136701668 136708659 + protein_coding processed_transcript MGP_CASTEiJ_T0000308.1 MGP_CASTEiJ_G0000257.1 mouse_genomes_project 6 6854823 6854893 - mt-Td Mt_tRNA Mt_tRNA MGP_CASTEiJ_T0080194.1 MGP_CASTEiJ_G0030332.1 mouse_genomes_project 6 125657548 125715882 + MGP_CASTEiJ_P0080194 Vmn2r23 protein_coding protein_coding MGP_CASTEiJ_T0004891.1 MGP_CASTEiJ_G0004190.1 mouse_genomes_project 6 89027124 89027797 + Gm44170 antisense antisense MGP_CASTEiJ_T0076797.1 MGP_CASTEiJ_G0029613.1 mouse_genomes_project 6 26437157 26447198 - MGP_CASTEiJ_P0076797 Prrt4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077276.1 MGP_CASTEiJ_G0029694.1 mouse_genomes_project 6 37176715 37187622 + MGP_CASTEiJ_P0077276 Rab19 protein_coding protein_coding MGP_CASTEiJ_T0077539.1 MGP_CASTEiJ_G0029784.1 mouse_genomes_project 6 45895486 45905915 + Zfp398 protein_coding retained_intron MGP_CASTEiJ_T0077540.1 MGP_CASTEiJ_G0029784.1 mouse_genomes_project 6 45895489 45922300 + MGP_CASTEiJ_P0077540 Zfp398 protein_coding protein_coding MGP_CASTEiJ_T0077541.1 MGP_CASTEiJ_G0029784.1 mouse_genomes_project 6 45895520 45928142 + MGP_CASTEiJ_P0077541 Zfp398 protein_coding protein_coding MGP_CASTEiJ_T0079561.1 MGP_CASTEiJ_G0030213.1 mouse_genomes_project 6 114988290 115000036 + MGP_CASTEiJ_P0079561 Il17rc protein_coding protein_coding MGP_CASTEiJ_T0079562.1 MGP_CASTEiJ_G0030213.1 mouse_genomes_project 6 114989152 114993305 + MGP_CASTEiJ_P0079562 Il17rc protein_coding protein_coding MGP_CASTEiJ_T0079563.1 MGP_CASTEiJ_G0030213.1 mouse_genomes_project 6 114989663 115000036 + MGP_CASTEiJ_P0079563 Il17rc protein_coding protein_coding MGP_CASTEiJ_T0079564.1 MGP_CASTEiJ_G0030213.1 mouse_genomes_project 6 114991101 114993611 + MGP_CASTEiJ_P0079564 Il17rc protein_coding protein_coding MGP_CASTEiJ_T0079565.1 MGP_CASTEiJ_G0030213.1 mouse_genomes_project 6 114993454 114996213 + Il17rc protein_coding retained_intron MGP_CASTEiJ_T0014783.1 MGP_CASTEiJ_G0012946.1 mouse_genomes_project 6 40614432 40614862 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102405.1 MGP_CASTEiJ_G0039130.1 mouse_genomes_project 6 67116902 67434673 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0077162.1 MGP_CASTEiJ_G0029673.1 mouse_genomes_project 6 34434836 34768907 - MGP_CASTEiJ_P0077162 Dgki protein_coding unknown_likely_coding MGP_CASTEiJ_T0077163.1 MGP_CASTEiJ_G0029673.1 mouse_genomes_project 6 34438799 34917140 - MGP_CASTEiJ_P0077163 Dgki protein_coding protein_coding MGP_CASTEiJ_T0077164.1 MGP_CASTEiJ_G0029673.1 mouse_genomes_project 6 34439759 34917350 - MGP_CASTEiJ_P0077164 Dgki protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077165.1 MGP_CASTEiJ_G0029673.1 mouse_genomes_project 6 34439759 34917350 - MGP_CASTEiJ_P0077165 Dgki protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077166.1 MGP_CASTEiJ_G0029673.1 mouse_genomes_project 6 34439759 34917350 - MGP_CASTEiJ_P0077166 Dgki protein_coding protein_coding MGP_CASTEiJ_T0077167.1 MGP_CASTEiJ_G0029673.1 mouse_genomes_project 6 34439934 34916803 - MGP_CASTEiJ_P0077167 Dgki protein_coding protein_coding MGP_CASTEiJ_T0077168.1 MGP_CASTEiJ_G0029673.1 mouse_genomes_project 6 34507650 34627146 - Dgki protein_coding processed_transcript MGP_CASTEiJ_T0077169.1 MGP_CASTEiJ_G0029673.1 mouse_genomes_project 6 34630766 34660711 - Dgki protein_coding processed_transcript MGP_CASTEiJ_T0077170.1 MGP_CASTEiJ_G0029673.1 mouse_genomes_project 6 34839724 34916910 - Dgki protein_coding processed_transcript MGP_CASTEiJ_T0014994.1 MGP_CASTEiJ_G0013157.1 mouse_genomes_project 6 116211449 116211882 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101192.1 MGP_CASTEiJ_G0038105.1 mouse_genomes_project 6 94682387 94682523 + Gm22840 snoRNA snoRNA MGP_CASTEiJ_T0077927.1 MGP_CASTEiJ_G0029872.1 mouse_genomes_project 6 54206367 54209819 - MGP_CASTEiJ_P0077927 Neurod6 protein_coding protein_coding MGP_CASTEiJ_T0014878.1 MGP_CASTEiJ_G0013041.1 mouse_genomes_project 6 67184963 67186042 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080733.1 MGP_CASTEiJ_G0030470.1 mouse_genomes_project 6 135426483 135427395 - MGP_CASTEiJ_P0080733 protein_coding protein_coding MGP_CASTEiJ_T0079521.1 MGP_CASTEiJ_G0030206.1 mouse_genomes_project 6 114873433 114884408 - MGP_CASTEiJ_P0079521 Tada3 protein_coding protein_coding MGP_CASTEiJ_T0079522.1 MGP_CASTEiJ_G0030206.1 mouse_genomes_project 6 114873446 114884845 - MGP_CASTEiJ_P0079522 Tada3 protein_coding protein_coding MGP_CASTEiJ_T0079523.1 MGP_CASTEiJ_G0030206.1 mouse_genomes_project 6 114873693 114877970 - Tada3 protein_coding retained_intron MGP_CASTEiJ_T0079524.1 MGP_CASTEiJ_G0030206.1 mouse_genomes_project 6 114881260 114884630 - Tada3 protein_coding retained_intron MGP_CASTEiJ_T0079525.1 MGP_CASTEiJ_G0030206.1 mouse_genomes_project 6 114881356 114884630 - Tada3 protein_coding retained_intron MGP_CASTEiJ_T0079526.1 MGP_CASTEiJ_G0030206.1 mouse_genomes_project 6 114882881 114884647 - MGP_CASTEiJ_P0079526 Tada3 protein_coding protein_coding MGP_CASTEiJ_T0015077.1 MGP_CASTEiJ_G0013240.1 mouse_genomes_project 6 138978085 138979180 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008413.1 MGP_CASTEiJ_G0006815.1 mouse_genomes_project 6 70893136 70893784 - Gm44110 lincRNA lincRNA MGP_CASTEiJ_T0081196.1 MGP_CASTEiJ_G0030559.1 mouse_genomes_project 6 149610811 149627675 + MGP_CASTEiJ_P0081196 Fgfr1op2 protein_coding protein_coding MGP_CASTEiJ_T0081197.1 MGP_CASTEiJ_G0030559.1 mouse_genomes_project 6 149611469 149635055 + MGP_CASTEiJ_P0081197 Fgfr1op2 protein_coding protein_coding MGP_CASTEiJ_T0081198.1 MGP_CASTEiJ_G0030559.1 mouse_genomes_project 6 149611469 149635055 + MGP_CASTEiJ_P0081198 Fgfr1op2 protein_coding protein_coding MGP_CASTEiJ_T0081199.1 MGP_CASTEiJ_G0030559.1 mouse_genomes_project 6 149611531 149627675 + MGP_CASTEiJ_P0081199 Fgfr1op2 protein_coding protein_coding MGP_CASTEiJ_T0081200.1 MGP_CASTEiJ_G0030559.1 mouse_genomes_project 6 149611550 149624808 + Fgfr1op2 protein_coding processed_transcript MGP_CASTEiJ_T0081201.1 MGP_CASTEiJ_G0030559.1 mouse_genomes_project 6 149611552 149622106 + Fgfr1op2 protein_coding retained_intron MGP_CASTEiJ_T0081202.1 MGP_CASTEiJ_G0030559.1 mouse_genomes_project 6 149623112 149632070 + Fgfr1op2 protein_coding processed_transcript MGP_CASTEiJ_T0076517.1 MGP_CASTEiJ_G0029557.1 mouse_genomes_project 6 10355752 10384927 - MGP_CASTEiJ_P0076517 Tmem168 protein_coding protein_coding MGP_CASTEiJ_T0076518.1 MGP_CASTEiJ_G0029557.1 mouse_genomes_project 6 10355752 10384927 - MGP_CASTEiJ_P0076518 Tmem168 protein_coding protein_coding MGP_CASTEiJ_T0076519.1 MGP_CASTEiJ_G0029557.1 mouse_genomes_project 6 10380197 10384575 - Tmem168 protein_coding processed_transcript MGP_CASTEiJ_T0076520.1 MGP_CASTEiJ_G0029557.1 mouse_genomes_project 6 10380213 10384832 - Tmem168 protein_coding processed_transcript MGP_CASTEiJ_T0076521.1 MGP_CASTEiJ_G0029557.1 mouse_genomes_project 6 10382753 10384871 - Tmem168 protein_coding processed_transcript MGP_CASTEiJ_T0076522.1 MGP_CASTEiJ_G0029557.1 mouse_genomes_project 6 10383415 10384846 - Tmem168 protein_coding processed_transcript MGP_CASTEiJ_T0076523.1 MGP_CASTEiJ_G0029557.1 mouse_genomes_project 6 10384113 10384854 - Tmem168 protein_coding processed_transcript MGP_CASTEiJ_T0002014.1 MGP_CASTEiJ_G0001935.1 mouse_genomes_project 6 92353599 92355289 - TEC TEC MGP_CASTEiJ_T0077369.1 MGP_CASTEiJ_G0029727.1 mouse_genomes_project 6 39260751 39262096 - MGP_CASTEiJ_P0077369 protein_coding protein_coding MGP_CASTEiJ_T0002594.1 MGP_CASTEiJ_G0002490.1 mouse_genomes_project 6 38984154 38984690 + MGP_CASTEiJ_P0002594 Trbv12-1 TR_V_gene TR_V_gene MGP_CASTEiJ_T0101637.1 MGP_CASTEiJ_G0038486.1 mouse_genomes_project 6 40001449 40002297 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101638.1 MGP_CASTEiJ_G0038486.1 mouse_genomes_project 6 40001856 40002216 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0004898.1 MGP_CASTEiJ_G0004196.1 mouse_genomes_project 6 91801764 91802308 - Gm14573 antisense antisense MGP_CASTEiJ_T0081281.1 MGP_CASTEiJ_G0030576.1 mouse_genomes_project 6 151312253 151542039 - MGP_CASTEiJ_P0081281 Tmtc1 protein_coding protein_coding MGP_CASTEiJ_T0081282.1 MGP_CASTEiJ_G0030576.1 mouse_genomes_project 6 151312253 151542039 - MGP_CASTEiJ_P0081282 Tmtc1 protein_coding protein_coding MGP_CASTEiJ_T0081283.1 MGP_CASTEiJ_G0030576.1 mouse_genomes_project 6 151327557 151539297 - MGP_CASTEiJ_P0081283 Tmtc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081284.1 MGP_CASTEiJ_G0030576.1 mouse_genomes_project 6 151509486 151539297 - MGP_CASTEiJ_P0081284 Tmtc1 protein_coding protein_coding MGP_CASTEiJ_T0014939.1 MGP_CASTEiJ_G0013102.1 mouse_genomes_project 6 92976562 92977037 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080631.1 MGP_CASTEiJ_G0030424.1 mouse_genomes_project 6 131836837 131841555 + Clec12a protein_coding retained_intron MGP_CASTEiJ_T0080632.1 MGP_CASTEiJ_G0030424.1 mouse_genomes_project 6 131837059 131855149 + MGP_CASTEiJ_P0080632 Clec12a protein_coding protein_coding MGP_CASTEiJ_T0080633.1 MGP_CASTEiJ_G0030424.1 mouse_genomes_project 6 131844733 131854260 + Clec12a protein_coding retained_intron MGP_CASTEiJ_T0079780.1 MGP_CASTEiJ_G0030251.1 mouse_genomes_project 6 117808603 117883723 + MGP_CASTEiJ_P0079780 Zfand4 protein_coding protein_coding MGP_CASTEiJ_T0099940.1 MGP_CASTEiJ_G0036853.1 mouse_genomes_project 6 23621900 23622040 - Gm24691 snRNA snRNA MGP_CASTEiJ_T0014843.1 MGP_CASTEiJ_G0013006.1 mouse_genomes_project 6 62391754 62392445 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010495.1 MGP_CASTEiJ_G0008683.1 mouse_genomes_project 6 115250638 115250696 + Mir7042 miRNA miRNA MGP_CASTEiJ_T0101198.1 MGP_CASTEiJ_G0038111.1 mouse_genomes_project 6 117242158 117242296 - Gm24008 snoRNA snoRNA MGP_CASTEiJ_T0098625.1 MGP_CASTEiJ_G0035556.1 mouse_genomes_project 6 9512565 9512685 + n-R5s160 rRNA rRNA MGP_CASTEiJ_T0078346.1 MGP_CASTEiJ_G0029976.1 mouse_genomes_project 6 72966126 72994576 + MGP_CASTEiJ_P0078346 Suclg1 protein_coding protein_coding MGP_CASTEiJ_T0078347.1 MGP_CASTEiJ_G0029976.1 mouse_genomes_project 6 72966396 72981977 + MGP_CASTEiJ_P0078347 Suclg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078348.1 MGP_CASTEiJ_G0029976.1 mouse_genomes_project 6 72966404 72994569 + MGP_CASTEiJ_P0078348 Suclg1 protein_coding protein_coding MGP_CASTEiJ_T0078349.1 MGP_CASTEiJ_G0029976.1 mouse_genomes_project 6 72966405 72975179 + Suclg1 protein_coding processed_transcript MGP_CASTEiJ_T0078350.1 MGP_CASTEiJ_G0029976.1 mouse_genomes_project 6 72966412 72980588 + Suclg1 protein_coding retained_intron MGP_CASTEiJ_T0078351.1 MGP_CASTEiJ_G0029976.1 mouse_genomes_project 6 72977930 72981973 + Suclg1 protein_coding retained_intron MGP_CASTEiJ_T0001877.1 MGP_CASTEiJ_G0001798.1 mouse_genomes_project 6 27526887 27529109 + TEC TEC MGP_CASTEiJ_T0079031.1 MGP_CASTEiJ_G0030106.1 mouse_genomes_project 6 89651202 89666644 + protein_coding lincRNA MGP_CASTEiJ_T0079032.1 MGP_CASTEiJ_G0030106.1 mouse_genomes_project 6 89651202 89664533 + protein_coding lincRNA MGP_CASTEiJ_T0079033.1 MGP_CASTEiJ_G0030106.1 mouse_genomes_project 6 89656000 89664847 + protein_coding lincRNA MGP_CASTEiJ_T0079034.1 MGP_CASTEiJ_G0030106.1 mouse_genomes_project 6 89656439 89666643 + MGP_CASTEiJ_P0079034 protein_coding protein_coding MGP_CASTEiJ_T0011309.1 MGP_CASTEiJ_G0009497.1 mouse_genomes_project 6 50520171 50520296 + Gm27867 misc_RNA misc_RNA MGP_CASTEiJ_T0010477.1 MGP_CASTEiJ_G0008665.1 mouse_genomes_project 6 81956381 81956459 - Mir468 miRNA miRNA MGP_CASTEiJ_T0078578.1 MGP_CASTEiJ_G0030026.1 mouse_genomes_project 6 83931595 83950451 + MGP_CASTEiJ_P0078578 Atp6v1b1 protein_coding protein_coding MGP_CASTEiJ_T0078579.1 MGP_CASTEiJ_G0030026.1 mouse_genomes_project 6 83931654 83940177 + Atp6v1b1 protein_coding processed_transcript MGP_CASTEiJ_T0078580.1 MGP_CASTEiJ_G0030026.1 mouse_genomes_project 6 83931669 83940705 + MGP_CASTEiJ_P0078580 Atp6v1b1 protein_coding protein_coding MGP_CASTEiJ_T0078581.1 MGP_CASTEiJ_G0030026.1 mouse_genomes_project 6 83931699 83944155 + MGP_CASTEiJ_P0078581 Atp6v1b1 protein_coding protein_coding MGP_CASTEiJ_T0078582.1 MGP_CASTEiJ_G0030026.1 mouse_genomes_project 6 83941232 83943247 + Atp6v1b1 protein_coding retained_intron MGP_CASTEiJ_T0078583.1 MGP_CASTEiJ_G0030026.1 mouse_genomes_project 6 83948721 83949828 + Atp6v1b1 protein_coding retained_intron MGP_CASTEiJ_T0099947.1 MGP_CASTEiJ_G0036860.1 mouse_genomes_project 6 37048172 37048277 - Gm26008 snRNA snRNA MGP_CASTEiJ_T0010516.1 MGP_CASTEiJ_G0008704.1 mouse_genomes_project 6 139349844 139349985 - Gm44364 miRNA miRNA MGP_CASTEiJ_T0079991.1 MGP_CASTEiJ_G0030286.1 mouse_genomes_project 6 121856698 121961812 + MGP_CASTEiJ_P0079991 Ninj2 protein_coding protein_coding MGP_CASTEiJ_T0079993.1 MGP_CASTEiJ_G0030286.1 mouse_genomes_project 6 121955382 121961807 + MGP_CASTEiJ_P0079993 Ninj2 protein_coding protein_coding MGP_CASTEiJ_T0077675.1 MGP_CASTEiJ_G0029815.1 mouse_genomes_project 6 47113788 47117584 + MGP_CASTEiJ_P0077675 Doxl2 protein_coding protein_coding MGP_CASTEiJ_T0077676.1 MGP_CASTEiJ_G0029815.1 mouse_genomes_project 6 47113899 47117585 + MGP_CASTEiJ_P0077676 Doxl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077677.1 MGP_CASTEiJ_G0029815.1 mouse_genomes_project 6 47116058 47117582 + Doxl2 protein_coding retained_intron MGP_CASTEiJ_T0080997.1 MGP_CASTEiJ_G0030523.1 mouse_genomes_project 6 144037777 144307615 + MGP_CASTEiJ_P0080997 Pde3a protein_coding protein_coding MGP_CASTEiJ_T0080998.1 MGP_CASTEiJ_G0030523.1 mouse_genomes_project 6 144038474 144267446 + Pde3a protein_coding retained_intron MGP_CASTEiJ_T0101808.1 MGP_CASTEiJ_G0038574.1 mouse_genomes_project 6 131440549 131455473 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101176.1 MGP_CASTEiJ_G0038089.1 mouse_genomes_project 6 58295366 58295495 - Gm22723 snoRNA snoRNA MGP_CASTEiJ_T0008500.1 MGP_CASTEiJ_G0006883.1 mouse_genomes_project 6 119933839 119943062 - Gm30498 lincRNA lincRNA MGP_CASTEiJ_T0080847.1 MGP_CASTEiJ_G0030496.1 mouse_genomes_project 6 139115616 139163779 - MGP_CASTEiJ_P0080847 Plbd1 protein_coding protein_coding MGP_CASTEiJ_T0080848.1 MGP_CASTEiJ_G0030496.1 mouse_genomes_project 6 139116857 139163724 - Plbd1 protein_coding retained_intron MGP_CASTEiJ_T0080849.1 MGP_CASTEiJ_G0030496.1 mouse_genomes_project 6 139117427 139136333 - Plbd1 protein_coding retained_intron MGP_CASTEiJ_T0080850.1 MGP_CASTEiJ_G0030496.1 mouse_genomes_project 6 139142136 139163414 - MGP_CASTEiJ_P0080850 Plbd1 protein_coding protein_coding MGP_CASTEiJ_T0004918.1 MGP_CASTEiJ_G0004207.1 mouse_genomes_project 6 112031068 112037241 - Gm20387 antisense antisense MGP_CASTEiJ_T0010500.1 MGP_CASTEiJ_G0008688.1 mouse_genomes_project 6 119702490 119702562 + Mir7044 miRNA miRNA MGP_CASTEiJ_T0080996.1 MGP_CASTEiJ_G0030522.1 mouse_genomes_project 6 143504706 143532827 + MGP_CASTEiJ_P0080996 Gm11077 protein_coding protein_coding MGP_CASTEiJ_T0078462.1 MGP_CASTEiJ_G0030001.1 mouse_genomes_project 6 83177731 83187547 + MGP_CASTEiJ_P0078462 Dqx1 protein_coding protein_coding MGP_CASTEiJ_T0078463.1 MGP_CASTEiJ_G0030001.1 mouse_genomes_project 6 83177984 83179876 + MGP_CASTEiJ_P0078463 Dqx1 protein_coding non_stop_decay MGP_CASTEiJ_T0079797.1 MGP_CASTEiJ_G0030254.1 mouse_genomes_project 6 117966823 118018590 - MGP_CASTEiJ_P0079797 Alox5 protein_coding protein_coding MGP_CASTEiJ_T0079798.1 MGP_CASTEiJ_G0030254.1 mouse_genomes_project 6 117967014 118018559 - MGP_CASTEiJ_P0079798 Alox5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079799.1 MGP_CASTEiJ_G0030254.1 mouse_genomes_project 6 117967020 118018543 - Alox5 protein_coding retained_intron MGP_CASTEiJ_T0079800.1 MGP_CASTEiJ_G0030254.1 mouse_genomes_project 6 117967022 117969577 - Alox5 protein_coding retained_intron MGP_CASTEiJ_T0079801.1 MGP_CASTEiJ_G0030254.1 mouse_genomes_project 6 117967353 118018436 - MGP_CASTEiJ_P0079801 Alox5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079802.1 MGP_CASTEiJ_G0030254.1 mouse_genomes_project 6 117967465 118018436 - MGP_CASTEiJ_P0079802 Alox5 protein_coding protein_coding MGP_CASTEiJ_T0079803.1 MGP_CASTEiJ_G0030254.1 mouse_genomes_project 6 117967465 118018436 - MGP_CASTEiJ_P0079803 Alox5 protein_coding protein_coding MGP_CASTEiJ_T0079804.1 MGP_CASTEiJ_G0030254.1 mouse_genomes_project 6 117969375 117970842 - Alox5 protein_coding retained_intron MGP_CASTEiJ_T0079805.1 MGP_CASTEiJ_G0030254.1 mouse_genomes_project 6 117972289 117982928 - Alox5 protein_coding processed_transcript MGP_CASTEiJ_T0015057.1 MGP_CASTEiJ_G0013220.1 mouse_genomes_project 6 133538262 133538368 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008314.1 MGP_CASTEiJ_G0006746.1 mouse_genomes_project 6 26239681 26288420 + Gm3294 lincRNA lincRNA MGP_CASTEiJ_T0002050.1 MGP_CASTEiJ_G0001971.1 mouse_genomes_project 6 114802863 114803916 - TEC TEC MGP_CASTEiJ_T0080100.1 MGP_CASTEiJ_G0030309.1 mouse_genomes_project 6 124116451 124130595 - MGP_CASTEiJ_P0080100 Klrg1 protein_coding protein_coding MGP_CASTEiJ_T0004894.1 MGP_CASTEiJ_G0004192.1 mouse_genomes_project 6 89383617 89388297 + Gm15612 antisense antisense MGP_CASTEiJ_T0011324.1 MGP_CASTEiJ_G0009512.1 mouse_genomes_project 6 83888383 83888561 + Gm27772 misc_RNA misc_RNA MGP_CASTEiJ_T0102381.1 MGP_CASTEiJ_G0039106.1 mouse_genomes_project 6 40315652 40315794 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0017528.1 MGP_CASTEiJ_G0014952.1 mouse_genomes_project 6 58822069 58951845 + processed_transcript lincRNA MGP_CASTEiJ_T0017529.1 MGP_CASTEiJ_G0014952.1 mouse_genomes_project 6 58822078 58836791 + processed_transcript lincRNA MGP_CASTEiJ_T0017530.1 MGP_CASTEiJ_G0014952.1 mouse_genomes_project 6 58822096 58830778 + processed_transcript lincRNA MGP_CASTEiJ_T0017531.1 MGP_CASTEiJ_G0014952.1 mouse_genomes_project 6 58822105 58830794 + processed_transcript lincRNA MGP_CASTEiJ_T0001927.1 MGP_CASTEiJ_G0001848.1 mouse_genomes_project 6 56239163 56241984 - TEC TEC MGP_CASTEiJ_T0001869.1 MGP_CASTEiJ_G0001790.1 mouse_genomes_project 6 25440234 25444042 - TEC TEC MGP_CASTEiJ_T0102403.1 MGP_CASTEiJ_G0039128.1 mouse_genomes_project 6 62152288 62152618 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0080801.1 MGP_CASTEiJ_G0030486.1 mouse_genomes_project 6 137437985 137458563 + MGP_CASTEiJ_P0080801 Gprc5a protein_coding protein_coding MGP_CASTEiJ_T0002118.1 MGP_CASTEiJ_G0002038.1 mouse_genomes_project 6 151957499 151959129 + TEC TEC MGP_CASTEiJ_T0077780.1 MGP_CASTEiJ_G0029837.1 mouse_genomes_project 6 50525140 50579616 - MGP_CASTEiJ_P0077780 Gm28308 protein_coding protein_coding MGP_CASTEiJ_T0077065.1 MGP_CASTEiJ_G0029655.1 mouse_genomes_project 6 31870773 31884657 + MGP_CASTEiJ_P0077065 Akr1b8 protein_coding protein_coding MGP_CASTEiJ_T0077066.1 MGP_CASTEiJ_G0029655.1 mouse_genomes_project 6 31872757 31881423 + Akr1b8 protein_coding processed_transcript MGP_CASTEiJ_T0008456.1 MGP_CASTEiJ_G0006847.1 mouse_genomes_project 6 91093798 91094985 + Gm44421 lincRNA lincRNA MGP_CASTEiJ_T0002591.1 MGP_CASTEiJ_G0002487.1 mouse_genomes_project 6 38919011 38919550 + MGP_CASTEiJ_P0002591 Trbv3 TR_V_gene TR_V_gene MGP_CASTEiJ_T0014999.1 MGP_CASTEiJ_G0013162.1 mouse_genomes_project 6 118198840 118201878 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002055.1 MGP_CASTEiJ_G0001976.1 mouse_genomes_project 6 117118534 117118948 + TEC TEC MGP_CASTEiJ_T0078713.1 MGP_CASTEiJ_G0030050.1 mouse_genomes_project 6 86147096 86150849 - MGP_CASTEiJ_P0078713 Nat8f5 protein_coding protein_coding MGP_CASTEiJ_T0014870.1 MGP_CASTEiJ_G0013033.1 mouse_genomes_project 6 66612839 66613482 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000192.1 MGP_CASTEiJ_G0000146.1 mouse_genomes_project 6 69417473 69417936 - MGP_CASTEiJ_P0000192 Igkv12-38 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000193.1 MGP_CASTEiJ_G0000146.1 mouse_genomes_project 6 69417473 69417936 - MGP_CASTEiJ_P0000193 Igkv12-38 IG_V_gene IG_V_gene MGP_CASTEiJ_T0098995.1 MGP_CASTEiJ_G0035915.1 mouse_genomes_project 6 91415938 91416530 - Gm44105 sense_intronic sense_intronic MGP_CASTEiJ_T0077955.1 MGP_CASTEiJ_G0029878.1 mouse_genomes_project 6 55322544 55343552 - MGP_CASTEiJ_P0077955 Kbtbd2 protein_coding protein_coding MGP_CASTEiJ_T0077956.1 MGP_CASTEiJ_G0029878.1 mouse_genomes_project 6 55322545 55343629 - MGP_CASTEiJ_P0077956 Kbtbd2 protein_coding protein_coding MGP_CASTEiJ_T0077957.1 MGP_CASTEiJ_G0029878.1 mouse_genomes_project 6 55323792 55343333 - MGP_CASTEiJ_P0077957 Kbtbd2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077958.1 MGP_CASTEiJ_G0029878.1 mouse_genomes_project 6 55335243 55343095 - MGP_CASTEiJ_P0077958 Kbtbd2 protein_coding protein_coding MGP_CASTEiJ_T0077959.1 MGP_CASTEiJ_G0029878.1 mouse_genomes_project 6 55335388 55342574 - Kbtbd2 protein_coding processed_transcript MGP_CASTEiJ_T0004993.1 MGP_CASTEiJ_G0004271.1 mouse_genomes_project 6 151451499 151454818 + Gm44020 antisense antisense MGP_CASTEiJ_T0014743.1 MGP_CASTEiJ_G0012906.1 mouse_genomes_project 6 16794651 16795417 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101200.1 MGP_CASTEiJ_G0038113.1 mouse_genomes_project 6 117931359 117931489 - Gm23527 snoRNA snoRNA MGP_CASTEiJ_T0001876.1 MGP_CASTEiJ_G0001797.1 mouse_genomes_project 6 27251261 27254908 - TEC TEC MGP_CASTEiJ_T0001984.1 MGP_CASTEiJ_G0001905.1 mouse_genomes_project 6 87312363 87314051 + TEC TEC MGP_CASTEiJ_T0002066.1 MGP_CASTEiJ_G0001986.1 mouse_genomes_project 6 124739383 124741750 + TEC TEC MGP_CASTEiJ_T0002100.1 MGP_CASTEiJ_G0002020.1 mouse_genomes_project 6 143043344 143044338 - TEC TEC MGP_CASTEiJ_T0000286.1 MGP_CASTEiJ_G0000235.1 mouse_genomes_project 6 68983703 68984236 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0015102.1 MGP_CASTEiJ_G0013265.1 mouse_genomes_project 6 152147588 152148000 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077368.1 MGP_CASTEiJ_G0029726.1 mouse_genomes_project 6 39260751 39264696 - MGP_CASTEiJ_P0077368 protein_coding protein_coding MGP_CASTEiJ_T0076314.1 MGP_CASTEiJ_G0029517.1 mouse_genomes_project 6 177143 216508 - MGP_CASTEiJ_P0076314 Hepacam2 protein_coding protein_coding MGP_CASTEiJ_T0076315.1 MGP_CASTEiJ_G0029517.1 mouse_genomes_project 6 177442 208408 - Hepacam2 protein_coding retained_intron MGP_CASTEiJ_T0076316.1 MGP_CASTEiJ_G0029517.1 mouse_genomes_project 6 196956 208422 - MGP_CASTEiJ_P0076316 Hepacam2 protein_coding protein_coding MGP_CASTEiJ_T0076317.1 MGP_CASTEiJ_G0029517.1 mouse_genomes_project 6 204308 220199 - MGP_CASTEiJ_P0076317 Hepacam2 protein_coding protein_coding MGP_CASTEiJ_T0076318.1 MGP_CASTEiJ_G0029517.1 mouse_genomes_project 6 204597 208389 - Hepacam2 protein_coding retained_intron MGP_CASTEiJ_T0014736.1 MGP_CASTEiJ_G0012899.1 mouse_genomes_project 6 13820161 13821857 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080254.1 MGP_CASTEiJ_G0030345.1 mouse_genomes_project 6 126842029 126843542 - Grcc10 protein_coding processed_transcript MGP_CASTEiJ_T0080255.1 MGP_CASTEiJ_G0030345.1 mouse_genomes_project 6 126842029 126844221 - MGP_CASTEiJ_P0080255 Grcc10 protein_coding protein_coding MGP_CASTEiJ_T0080256.1 MGP_CASTEiJ_G0030345.1 mouse_genomes_project 6 126842032 126843912 - Grcc10 protein_coding retained_intron MGP_CASTEiJ_T0080257.1 MGP_CASTEiJ_G0030345.1 mouse_genomes_project 6 126842033 126843562 - Grcc10 protein_coding retained_intron MGP_CASTEiJ_T0101197.1 MGP_CASTEiJ_G0038110.1 mouse_genomes_project 6 106501123 106501262 + Gm23339 snoRNA snoRNA MGP_CASTEiJ_T0008386.1 MGP_CASTEiJ_G0006793.1 mouse_genomes_project 6 50008209 50026482 - Gm44191 lincRNA lincRNA MGP_CASTEiJ_T0079918.1 MGP_CASTEiJ_G0030279.1 mouse_genomes_project 6 121020891 121036355 - MGP_CASTEiJ_P0079918 Lrtm2 protein_coding protein_coding MGP_CASTEiJ_T0079919.1 MGP_CASTEiJ_G0030279.1 mouse_genomes_project 6 121020891 121034790 - MGP_CASTEiJ_P0079919 Lrtm2 protein_coding protein_coding MGP_CASTEiJ_T0079920.1 MGP_CASTEiJ_G0030279.1 mouse_genomes_project 6 121020891 121036346 - MGP_CASTEiJ_P0079920 Lrtm2 protein_coding protein_coding MGP_CASTEiJ_T0079921.1 MGP_CASTEiJ_G0030279.1 mouse_genomes_project 6 121029437 121034790 - MGP_CASTEiJ_P0079921 Lrtm2 protein_coding protein_coding MGP_CASTEiJ_T0078435.1 MGP_CASTEiJ_G0029999.1 mouse_genomes_project 6 83169623 83174333 - MGP_CASTEiJ_P0078435 Htra2 protein_coding protein_coding MGP_CASTEiJ_T0078436.1 MGP_CASTEiJ_G0029999.1 mouse_genomes_project 6 83169623 83174462 - MGP_CASTEiJ_P0078436 Htra2 protein_coding protein_coding MGP_CASTEiJ_T0078437.1 MGP_CASTEiJ_G0029999.1 mouse_genomes_project 6 83169637 83174462 - MGP_CASTEiJ_P0078437 Htra2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078438.1 MGP_CASTEiJ_G0029999.1 mouse_genomes_project 6 83169641 83175162 - Htra2 protein_coding retained_intron MGP_CASTEiJ_T0078439.1 MGP_CASTEiJ_G0029999.1 mouse_genomes_project 6 83169744 83173577 - MGP_CASTEiJ_P0078439 Htra2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078440.1 MGP_CASTEiJ_G0029999.1 mouse_genomes_project 6 83169834 83173728 - MGP_CASTEiJ_P0078440 Htra2 protein_coding protein_coding MGP_CASTEiJ_T0078441.1 MGP_CASTEiJ_G0029999.1 mouse_genomes_project 6 83169843 83173728 - Htra2 protein_coding retained_intron MGP_CASTEiJ_T0078442.1 MGP_CASTEiJ_G0029999.1 mouse_genomes_project 6 83171718 83173928 - MGP_CASTEiJ_P0078442 Htra2 protein_coding protein_coding MGP_CASTEiJ_T0078443.1 MGP_CASTEiJ_G0029999.1 mouse_genomes_project 6 83172928 83175054 - Htra2 protein_coding processed_transcript MGP_CASTEiJ_T0078444.1 MGP_CASTEiJ_G0029999.1 mouse_genomes_project 6 83173037 83173776 - Htra2 protein_coding processed_transcript MGP_CASTEiJ_T0008300.1 MGP_CASTEiJ_G0006736.1 mouse_genomes_project 6 10211656 10231056 + lincRNA lincRNA MGP_CASTEiJ_T0015003.1 MGP_CASTEiJ_G0013166.1 mouse_genomes_project 6 119046328 119046752 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008362.1 MGP_CASTEiJ_G0006774.1 mouse_genomes_project 6 36293039 36295820 - Gm26699 lincRNA lincRNA MGP_CASTEiJ_T0077930.1 MGP_CASTEiJ_G0029874.1 mouse_genomes_project 6 54581245 54597703 + MGP_CASTEiJ_P0077930 Ppp1r17 protein_coding protein_coding MGP_CASTEiJ_T0004882.1 MGP_CASTEiJ_G0004184.1 mouse_genomes_project 6 88135880 88141845 + Gm44097 antisense antisense MGP_CASTEiJ_T0101787.1 MGP_CASTEiJ_G0038567.1 mouse_genomes_project 6 46004634 46016642 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101788.1 MGP_CASTEiJ_G0038567.1 mouse_genomes_project 6 46004658 46010142 + transcribed_unprocessed_pseudogene retained_intron MGP_CASTEiJ_T0101789.1 MGP_CASTEiJ_G0038567.1 mouse_genomes_project 6 46004666 46010159 + transcribed_unprocessed_pseudogene retained_intron MGP_CASTEiJ_T0101790.1 MGP_CASTEiJ_G0038567.1 mouse_genomes_project 6 46004671 46015246 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101791.1 MGP_CASTEiJ_G0038567.1 mouse_genomes_project 6 46004671 46008722 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101792.1 MGP_CASTEiJ_G0038567.1 mouse_genomes_project 6 46004713 46015667 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101793.1 MGP_CASTEiJ_G0038567.1 mouse_genomes_project 6 46007426 46010979 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0101794.1 MGP_CASTEiJ_G0038567.1 mouse_genomes_project 6 46007494 46013348 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101795.1 MGP_CASTEiJ_G0038567.1 mouse_genomes_project 6 46007885 46018041 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101796.1 MGP_CASTEiJ_G0038567.1 mouse_genomes_project 6 46007898 46015668 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101797.1 MGP_CASTEiJ_G0038567.1 mouse_genomes_project 6 46008668 46015667 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0002615.1 MGP_CASTEiJ_G0002506.1 mouse_genomes_project 6 39392293 39392975 - MGP_CASTEiJ_P0002615 Trbv31 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002616.1 MGP_CASTEiJ_G0002506.1 mouse_genomes_project 6 39392295 39393056 - MGP_CASTEiJ_P0002616 Trbv31 TR_V_gene TR_V_gene MGP_CASTEiJ_T0000261.1 MGP_CASTEiJ_G0000210.1 mouse_genomes_project 6 66984763 66985061 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0004862.1 MGP_CASTEiJ_G0004174.1 mouse_genomes_project 6 83953707 83954451 - 1700124L16Rik antisense antisense MGP_CASTEiJ_T0004863.1 MGP_CASTEiJ_G0004174.1 mouse_genomes_project 6 83953707 83954808 - 1700124L16Rik antisense antisense MGP_CASTEiJ_T0004864.1 MGP_CASTEiJ_G0004174.1 mouse_genomes_project 6 83953707 83954785 - 1700124L16Rik antisense antisense MGP_CASTEiJ_T0079487.1 MGP_CASTEiJ_G0030202.1 mouse_genomes_project 6 114779523 114802866 + Cpne9 protein_coding retained_intron MGP_CASTEiJ_T0079488.1 MGP_CASTEiJ_G0030202.1 mouse_genomes_project 6 114779523 114802808 + MGP_CASTEiJ_P0079488 Cpne9 protein_coding protein_coding MGP_CASTEiJ_T0079489.1 MGP_CASTEiJ_G0030202.1 mouse_genomes_project 6 114779526 114802064 + MGP_CASTEiJ_P0079489 Cpne9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079490.1 MGP_CASTEiJ_G0030202.1 mouse_genomes_project 6 114779551 114780657 + Cpne9 protein_coding retained_intron MGP_CASTEiJ_T0079491.1 MGP_CASTEiJ_G0030202.1 mouse_genomes_project 6 114779552 114782501 + Cpne9 protein_coding retained_intron MGP_CASTEiJ_T0079492.1 MGP_CASTEiJ_G0030202.1 mouse_genomes_project 6 114779555 114780735 + Cpne9 protein_coding retained_intron MGP_CASTEiJ_T0079493.1 MGP_CASTEiJ_G0030202.1 mouse_genomes_project 6 114779580 114781202 + Cpne9 protein_coding processed_transcript MGP_CASTEiJ_T0079494.1 MGP_CASTEiJ_G0030202.1 mouse_genomes_project 6 114779581 114781657 + Cpne9 protein_coding processed_transcript MGP_CASTEiJ_T0079495.1 MGP_CASTEiJ_G0030202.1 mouse_genomes_project 6 114779690 114801861 + MGP_CASTEiJ_P0079495 Cpne9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079496.1 MGP_CASTEiJ_G0030202.1 mouse_genomes_project 6 114785717 114802810 + Cpne9 protein_coding retained_intron MGP_CASTEiJ_T0079497.1 MGP_CASTEiJ_G0030202.1 mouse_genomes_project 6 114791558 114798926 + Cpne9 protein_coding processed_transcript MGP_CASTEiJ_T0002033.1 MGP_CASTEiJ_G0001954.1 mouse_genomes_project 6 102024243 102024831 - TEC TEC MGP_CASTEiJ_T0000276.1 MGP_CASTEiJ_G0000225.1 mouse_genomes_project 6 68082836 68083094 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0000266.1 MGP_CASTEiJ_G0000215.1 mouse_genomes_project 6 67313434 67313900 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0078067.1 MGP_CASTEiJ_G0029917.1 mouse_genomes_project 6 62488520 62553133 + Grid2 protein_coding processed_transcript MGP_CASTEiJ_T0078068.1 MGP_CASTEiJ_G0029917.1 mouse_genomes_project 6 62488650 63475775 + Grid2 protein_coding processed_transcript MGP_CASTEiJ_T0078069.1 MGP_CASTEiJ_G0029917.1 mouse_genomes_project 6 62488671 63965769 + MGP_CASTEiJ_P0078069 Grid2 protein_coding protein_coding MGP_CASTEiJ_T0078070.1 MGP_CASTEiJ_G0029917.1 mouse_genomes_project 6 62488839 62765580 + Grid2 protein_coding retained_intron MGP_CASTEiJ_T0078071.1 MGP_CASTEiJ_G0029917.1 mouse_genomes_project 6 62489470 63574317 + Grid2 protein_coding retained_intron MGP_CASTEiJ_T0078072.1 MGP_CASTEiJ_G0029917.1 mouse_genomes_project 6 63373765 63392993 + Grid2 protein_coding retained_intron MGP_CASTEiJ_T0081317.1 MGP_CASTEiJ_G0030581.1 mouse_genomes_project 6 152286466 152291981 + MGP_CASTEiJ_P0081317 Mettl20 protein_coding protein_coding MGP_CASTEiJ_T0081318.1 MGP_CASTEiJ_G0030581.1 mouse_genomes_project 6 152288206 152303116 + MGP_CASTEiJ_P0081318 Mettl20 protein_coding protein_coding MGP_CASTEiJ_T0081319.1 MGP_CASTEiJ_G0030581.1 mouse_genomes_project 6 152288206 152303111 + MGP_CASTEiJ_P0081319 Mettl20 protein_coding protein_coding MGP_CASTEiJ_T0081320.1 MGP_CASTEiJ_G0030581.1 mouse_genomes_project 6 152288209 152296252 + MGP_CASTEiJ_P0081320 Mettl20 protein_coding protein_coding MGP_CASTEiJ_T0081321.1 MGP_CASTEiJ_G0030581.1 mouse_genomes_project 6 152288247 152296252 + MGP_CASTEiJ_P0081321 Mettl20 protein_coding protein_coding MGP_CASTEiJ_T0081322.1 MGP_CASTEiJ_G0030581.1 mouse_genomes_project 6 152288257 152302343 + MGP_CASTEiJ_P0081322 Mettl20 protein_coding protein_coding MGP_CASTEiJ_T0081323.1 MGP_CASTEiJ_G0030581.1 mouse_genomes_project 6 152288267 152303116 + MGP_CASTEiJ_P0081323 Mettl20 protein_coding protein_coding MGP_CASTEiJ_T0081324.1 MGP_CASTEiJ_G0030581.1 mouse_genomes_project 6 152288331 152302358 + MGP_CASTEiJ_P0081324 Mettl20 protein_coding protein_coding MGP_CASTEiJ_T0081325.1 MGP_CASTEiJ_G0030581.1 mouse_genomes_project 6 152288339 152303116 + MGP_CASTEiJ_P0081325 Mettl20 protein_coding protein_coding MGP_CASTEiJ_T0079813.1 MGP_CASTEiJ_G0030260.1 mouse_genomes_project 6 118205559 118211440 - MGP_CASTEiJ_P0079813 Zfp422 protein_coding protein_coding MGP_CASTEiJ_T0079814.1 MGP_CASTEiJ_G0030260.1 mouse_genomes_project 6 118205851 118209062 - Zfp422 protein_coding processed_transcript MGP_CASTEiJ_T0077356.1 MGP_CASTEiJ_G0029717.1 mouse_genomes_project 6 38801732 38820731 - MGP_CASTEiJ_P0077356 1700074P13Rik protein_coding protein_coding MGP_CASTEiJ_T0077357.1 MGP_CASTEiJ_G0029717.1 mouse_genomes_project 6 38801755 38820791 - MGP_CASTEiJ_P0077357 1700074P13Rik protein_coding protein_coding MGP_CASTEiJ_T0077358.1 MGP_CASTEiJ_G0029717.1 mouse_genomes_project 6 38803084 38810987 - MGP_CASTEiJ_P0077358 1700074P13Rik protein_coding protein_coding MGP_CASTEiJ_T0000189.1 MGP_CASTEiJ_G0000144.1 mouse_genomes_project 6 69223560 69224126 - MGP_CASTEiJ_P0000189 Igkv5-48 IG_V_gene IG_V_gene MGP_CASTEiJ_T0014906.1 MGP_CASTEiJ_G0013069.1 mouse_genomes_project 6 79474892 79475652 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077912.1 MGP_CASTEiJ_G0029868.1 mouse_genomes_project 6 53713231 53832119 + MGP_CASTEiJ_P0077912 Fam188b protein_coding protein_coding MGP_CASTEiJ_T0077913.1 MGP_CASTEiJ_G0029868.1 mouse_genomes_project 6 53713231 53787615 + MGP_CASTEiJ_P0077913 Fam188b protein_coding protein_coding MGP_CASTEiJ_T0077914.1 MGP_CASTEiJ_G0029868.1 mouse_genomes_project 6 53787144 53830230 + Fam188b protein_coding processed_transcript MGP_CASTEiJ_T0080354.1 MGP_CASTEiJ_G0030363.1 mouse_genomes_project 6 127127180 127155317 + protein_coding retained_intron MGP_CASTEiJ_T0080355.1 MGP_CASTEiJ_G0030363.1 mouse_genomes_project 6 127127268 127151113 + protein_coding processed_transcript MGP_CASTEiJ_T0080356.1 MGP_CASTEiJ_G0030363.1 mouse_genomes_project 6 127127627 127155868 + MGP_CASTEiJ_P0080356 protein_coding unknown_likely_coding MGP_CASTEiJ_T0080357.1 MGP_CASTEiJ_G0030363.1 mouse_genomes_project 6 127127705 127143981 + protein_coding processed_transcript MGP_CASTEiJ_T0080358.1 MGP_CASTEiJ_G0030363.1 mouse_genomes_project 6 127127707 127144127 + MGP_CASTEiJ_P0080358 protein_coding protein_coding MGP_CASTEiJ_T0080359.1 MGP_CASTEiJ_G0030363.1 mouse_genomes_project 6 127127737 127151988 + protein_coding retained_intron MGP_CASTEiJ_T0080360.1 MGP_CASTEiJ_G0030363.1 mouse_genomes_project 6 127144000 127151984 + protein_coding retained_intron MGP_CASTEiJ_T0008319.1 MGP_CASTEiJ_G0006749.1 mouse_genomes_project 6 27851550 27855620 + 1700012C14Rik lincRNA lincRNA MGP_CASTEiJ_T0008320.1 MGP_CASTEiJ_G0006749.1 mouse_genomes_project 6 27852412 27855672 + 1700012C14Rik lincRNA lincRNA MGP_CASTEiJ_T0004779.1 MGP_CASTEiJ_G0004113.1 mouse_genomes_project 6 18991919 18992984 + Gm42582 antisense antisense MGP_CASTEiJ_T0008470.1 MGP_CASTEiJ_G0006857.1 mouse_genomes_project 6 100986396 101013051 - Gm44290 lincRNA lincRNA MGP_CASTEiJ_T0010466.1 MGP_CASTEiJ_G0008654.1 mouse_genomes_project 6 46107371 46107454 + Gm24563 miRNA miRNA MGP_CASTEiJ_T0002108.1 MGP_CASTEiJ_G0002028.1 mouse_genomes_project 6 148306555 148307428 + TEC TEC MGP_CASTEiJ_T0008412.1 MGP_CASTEiJ_G0006814.1 mouse_genomes_project 6 70847971 70855425 + Gm1070 lincRNA lincRNA MGP_CASTEiJ_T0079053.1 MGP_CASTEiJ_G0030115.1 mouse_genomes_project 6 90577080 90586368 + MGP_CASTEiJ_P0079053 Vmn1r46 protein_coding protein_coding MGP_CASTEiJ_T0079054.1 MGP_CASTEiJ_G0030115.1 mouse_genomes_project 6 90585411 90586341 + MGP_CASTEiJ_P0079054 Vmn1r46 protein_coding protein_coding MGP_CASTEiJ_T0014804.1 MGP_CASTEiJ_G0012967.1 mouse_genomes_project 6 47208187 47208499 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099951.1 MGP_CASTEiJ_G0036864.1 mouse_genomes_project 6 40718321 40718426 + Gm23982 snRNA snRNA MGP_CASTEiJ_T0080757.1 MGP_CASTEiJ_G0030479.1 mouse_genomes_project 6 136958957 137034776 + MGP_CASTEiJ_P0080757 Borcs5 protein_coding protein_coding MGP_CASTEiJ_T0080758.1 MGP_CASTEiJ_G0030479.1 mouse_genomes_project 6 136960411 137035608 + MGP_CASTEiJ_P0080758 Borcs5 protein_coding protein_coding MGP_CASTEiJ_T0080759.1 MGP_CASTEiJ_G0030479.1 mouse_genomes_project 6 136960432 136964162 + Borcs5 protein_coding retained_intron MGP_CASTEiJ_T0080760.1 MGP_CASTEiJ_G0030479.1 mouse_genomes_project 6 136960726 137012216 + Borcs5 protein_coding retained_intron MGP_CASTEiJ_T0080761.1 MGP_CASTEiJ_G0030479.1 mouse_genomes_project 6 137024179 137034876 + Borcs5 protein_coding processed_transcript MGP_CASTEiJ_T0008278.1 MGP_CASTEiJ_G0006725.1 mouse_genomes_project 6 757021 775932 - Gm43986 lincRNA lincRNA MGP_CASTEiJ_T0008373.1 MGP_CASTEiJ_G0006784.1 mouse_genomes_project 6 46989824 46995700 + Gm7932 lincRNA lincRNA MGP_CASTEiJ_T0008374.1 MGP_CASTEiJ_G0006784.1 mouse_genomes_project 6 46989919 46994061 + Gm7932 lincRNA lincRNA MGP_CASTEiJ_T0080719.1 MGP_CASTEiJ_G0030456.1 mouse_genomes_project 6 135135402 135136320 - MGP_CASTEiJ_P0080719 Tas2r121 protein_coding protein_coding MGP_CASTEiJ_T0078095.1 MGP_CASTEiJ_G0029922.1 mouse_genomes_project 6 64823814 64932585 + MGP_CASTEiJ_P0078095 Tnip3 protein_coding protein_coding MGP_CASTEiJ_T0078096.1 MGP_CASTEiJ_G0029922.1 mouse_genomes_project 6 64888031 64897827 + Tnip3 protein_coding retained_intron MGP_CASTEiJ_T0078097.1 MGP_CASTEiJ_G0029922.1 mouse_genomes_project 6 64888043 64889281 + Tnip3 protein_coding processed_transcript MGP_CASTEiJ_T0078098.1 MGP_CASTEiJ_G0029922.1 mouse_genomes_project 6 64888074 64891345 + Tnip3 protein_coding retained_intron MGP_CASTEiJ_T0078099.1 MGP_CASTEiJ_G0029922.1 mouse_genomes_project 6 64888102 64892759 + Tnip3 protein_coding retained_intron MGP_CASTEiJ_T0078100.1 MGP_CASTEiJ_G0029922.1 mouse_genomes_project 6 64895228 64897850 + Tnip3 protein_coding retained_intron MGP_CASTEiJ_T0099979.1 MGP_CASTEiJ_G0036892.1 mouse_genomes_project 6 126844071 126844133 - Rnu7 snRNA snRNA MGP_CASTEiJ_T0079062.1 MGP_CASTEiJ_G0030122.1 mouse_genomes_project 6 90947782 90980089 + MGP_CASTEiJ_P0079062 Uroc1 protein_coding protein_coding MGP_CASTEiJ_T0079063.1 MGP_CASTEiJ_G0030122.1 mouse_genomes_project 6 90947787 90980084 + MGP_CASTEiJ_P0079063 Uroc1 protein_coding protein_coding MGP_CASTEiJ_T0014733.1 MGP_CASTEiJ_G0012896.1 mouse_genomes_project 6 12953905 12954179 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081004.1 MGP_CASTEiJ_G0030525.1 mouse_genomes_project 6 144422518 144486592 + MGP_CASTEiJ_P0081004 Slco1b2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0081005.1 MGP_CASTEiJ_G0030525.1 mouse_genomes_project 6 144429403 144486592 + MGP_CASTEiJ_P0081005 Slco1b2 protein_coding protein_coding MGP_CASTEiJ_T0081006.1 MGP_CASTEiJ_G0030525.1 mouse_genomes_project 6 144449687 144454310 + Slco1b2 protein_coding retained_intron MGP_CASTEiJ_T0081007.1 MGP_CASTEiJ_G0030525.1 mouse_genomes_project 6 144482221 144486595 + Slco1b2 protein_coding retained_intron MGP_CASTEiJ_T0081059.1 MGP_CASTEiJ_G0030540.1 mouse_genomes_project 6 145418427 145546409 - MGP_CASTEiJ_P0081059 Abcc9 protein_coding protein_coding MGP_CASTEiJ_T0081060.1 MGP_CASTEiJ_G0030540.1 mouse_genomes_project 6 145418427 145546353 - MGP_CASTEiJ_P0081060 Abcc9 protein_coding protein_coding MGP_CASTEiJ_T0081061.1 MGP_CASTEiJ_G0030540.1 mouse_genomes_project 6 145418427 145546409 - MGP_CASTEiJ_P0081061 Abcc9 protein_coding protein_coding MGP_CASTEiJ_T0081062.1 MGP_CASTEiJ_G0030540.1 mouse_genomes_project 6 145419695 145546353 - MGP_CASTEiJ_P0081062 Abcc9 protein_coding protein_coding MGP_CASTEiJ_T0081063.1 MGP_CASTEiJ_G0030540.1 mouse_genomes_project 6 145425827 145546408 - MGP_CASTEiJ_P0081063 Abcc9 protein_coding protein_coding MGP_CASTEiJ_T0081064.1 MGP_CASTEiJ_G0030540.1 mouse_genomes_project 6 145536108 145546450 - MGP_CASTEiJ_P0081064 Abcc9 protein_coding protein_coding MGP_CASTEiJ_T0014819.1 MGP_CASTEiJ_G0012982.1 mouse_genomes_project 6 51250978 51251570 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101208.1 MGP_CASTEiJ_G0038121.1 mouse_genomes_project 6 126104501 126104577 - Gm24843 snoRNA snoRNA MGP_CASTEiJ_T0101203.1 MGP_CASTEiJ_G0038116.1 mouse_genomes_project 6 125308699 125308831 - Gm25065 snoRNA snoRNA MGP_CASTEiJ_T0010468.1 MGP_CASTEiJ_G0008656.1 mouse_genomes_project 6 48782252 48782363 + Mir6371 miRNA miRNA MGP_CASTEiJ_T0079377.1 MGP_CASTEiJ_G0030182.1 mouse_genomes_project 6 108078978 108087437 + MGP_CASTEiJ_P0079377 Trnt1 protein_coding protein_coding MGP_CASTEiJ_T0079378.1 MGP_CASTEiJ_G0030182.1 mouse_genomes_project 6 108078999 108091601 + MGP_CASTEiJ_P0079378 Trnt1 protein_coding protein_coding MGP_CASTEiJ_T0079379.1 MGP_CASTEiJ_G0030182.1 mouse_genomes_project 6 108079024 108092193 + MGP_CASTEiJ_P0079379 Trnt1 protein_coding protein_coding MGP_CASTEiJ_T0079380.1 MGP_CASTEiJ_G0030182.1 mouse_genomes_project 6 108079024 108091384 + MGP_CASTEiJ_P0079380 Trnt1 protein_coding protein_coding MGP_CASTEiJ_T0079381.1 MGP_CASTEiJ_G0030182.1 mouse_genomes_project 6 108079028 108079910 + Trnt1 protein_coding retained_intron MGP_CASTEiJ_T0079382.1 MGP_CASTEiJ_G0030182.1 mouse_genomes_project 6 108079071 108082823 + Trnt1 protein_coding processed_transcript MGP_CASTEiJ_T0079383.1 MGP_CASTEiJ_G0030182.1 mouse_genomes_project 6 108079144 108083119 + MGP_CASTEiJ_P0079383 Trnt1 protein_coding protein_coding MGP_CASTEiJ_T0079384.1 MGP_CASTEiJ_G0030182.1 mouse_genomes_project 6 108079365 108084229 + MGP_CASTEiJ_P0079384 Trnt1 protein_coding protein_coding MGP_CASTEiJ_T0008548.1 MGP_CASTEiJ_G0006917.1 mouse_genomes_project 6 148246386 148248162 + Gm15706 lincRNA lincRNA MGP_CASTEiJ_T0010498.1 MGP_CASTEiJ_G0008686.1 mouse_genomes_project 6 118228312 118228382 - Mir7043 miRNA miRNA MGP_CASTEiJ_T0079782.1 MGP_CASTEiJ_G0030253.1 mouse_genomes_project 6 117892754 117966287 + MGP_CASTEiJ_P0079782 protein_coding protein_coding MGP_CASTEiJ_T0079783.1 MGP_CASTEiJ_G0030253.1 mouse_genomes_project 6 117892757 117966290 + MGP_CASTEiJ_P0079783 protein_coding protein_coding MGP_CASTEiJ_T0079784.1 MGP_CASTEiJ_G0030253.1 mouse_genomes_project 6 117892763 117966287 + MGP_CASTEiJ_P0079784 protein_coding protein_coding MGP_CASTEiJ_T0079785.1 MGP_CASTEiJ_G0030253.1 mouse_genomes_project 6 117892774 117962500 + MGP_CASTEiJ_P0079785 protein_coding protein_coding MGP_CASTEiJ_T0079786.1 MGP_CASTEiJ_G0030253.1 mouse_genomes_project 6 117892783 117962488 + MGP_CASTEiJ_P0079786 protein_coding protein_coding MGP_CASTEiJ_T0079787.1 MGP_CASTEiJ_G0030253.1 mouse_genomes_project 6 117892794 117936188 + MGP_CASTEiJ_P0079787 protein_coding protein_coding MGP_CASTEiJ_T0079788.1 MGP_CASTEiJ_G0030253.1 mouse_genomes_project 6 117905849 117908913 + protein_coding retained_intron MGP_CASTEiJ_T0079789.1 MGP_CASTEiJ_G0030253.1 mouse_genomes_project 6 117906331 117960304 + MGP_CASTEiJ_P0079789 protein_coding protein_coding MGP_CASTEiJ_T0079790.1 MGP_CASTEiJ_G0030253.1 mouse_genomes_project 6 117906372 117936249 + MGP_CASTEiJ_P0079790 protein_coding protein_coding MGP_CASTEiJ_T0079791.1 MGP_CASTEiJ_G0030253.1 mouse_genomes_project 6 117936078 117958307 + protein_coding retained_intron MGP_CASTEiJ_T0079792.1 MGP_CASTEiJ_G0030253.1 mouse_genomes_project 6 117945516 117962971 + MGP_CASTEiJ_P0079792 protein_coding protein_coding MGP_CASTEiJ_T0079793.1 MGP_CASTEiJ_G0030253.1 mouse_genomes_project 6 117945542 117962881 + protein_coding retained_intron MGP_CASTEiJ_T0079794.1 MGP_CASTEiJ_G0030253.1 mouse_genomes_project 6 117949398 117958733 + protein_coding processed_transcript MGP_CASTEiJ_T0079795.1 MGP_CASTEiJ_G0030253.1 mouse_genomes_project 6 117959867 117962529 + protein_coding processed_transcript MGP_CASTEiJ_T0079796.1 MGP_CASTEiJ_G0030253.1 mouse_genomes_project 6 117961923 117963052 + protein_coding processed_transcript MGP_CASTEiJ_T0099978.1 MGP_CASTEiJ_G0036891.1 mouse_genomes_project 6 122322882 122322984 + Gm24391 snRNA snRNA MGP_CASTEiJ_T0078950.1 MGP_CASTEiJ_G0030098.1 mouse_genomes_project 6 88988554 89021084 + MGP_CASTEiJ_P0078950 Ruvbl1 protein_coding protein_coding MGP_CASTEiJ_T0078951.1 MGP_CASTEiJ_G0030098.1 mouse_genomes_project 6 88988872 89006584 + MGP_CASTEiJ_P0078951 Ruvbl1 protein_coding protein_coding MGP_CASTEiJ_T0015094.1 MGP_CASTEiJ_G0013257.1 mouse_genomes_project 6 148317583 148318579 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079754.1 MGP_CASTEiJ_G0030248.1 mouse_genomes_project 6 117479091 117519019 - MGP_CASTEiJ_P0079754 Plxnd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079755.1 MGP_CASTEiJ_G0030248.1 mouse_genomes_project 6 117479094 117519191 - MGP_CASTEiJ_P0079755 Plxnd1 protein_coding protein_coding MGP_CASTEiJ_T0079756.1 MGP_CASTEiJ_G0030248.1 mouse_genomes_project 6 117479928 117481133 - Plxnd1 protein_coding retained_intron MGP_CASTEiJ_T0079757.1 MGP_CASTEiJ_G0030248.1 mouse_genomes_project 6 117480094 117480659 - Plxnd1 protein_coding retained_intron MGP_CASTEiJ_T0079758.1 MGP_CASTEiJ_G0030248.1 mouse_genomes_project 6 117482851 117484321 - Plxnd1 protein_coding retained_intron MGP_CASTEiJ_T0079759.1 MGP_CASTEiJ_G0030248.1 mouse_genomes_project 6 117491082 117493562 - MGP_CASTEiJ_P0079759 Plxnd1 protein_coding protein_coding MGP_CASTEiJ_T0014857.1 MGP_CASTEiJ_G0013020.1 mouse_genomes_project 6 65086099 65086486 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078410.1 MGP_CASTEiJ_G0029993.1 mouse_genomes_project 6 82696254 82787100 - Pole4 protein_coding processed_transcript MGP_CASTEiJ_T0078411.1 MGP_CASTEiJ_G0029993.1 mouse_genomes_project 6 82699104 82724391 - MGP_CASTEiJ_P0078411 Pole4 protein_coding protein_coding MGP_CASTEiJ_T0078412.1 MGP_CASTEiJ_G0029993.1 mouse_genomes_project 6 82718389 82724450 - MGP_CASTEiJ_P0078412 Pole4 protein_coding protein_coding MGP_CASTEiJ_T0078413.1 MGP_CASTEiJ_G0029993.1 mouse_genomes_project 6 82719003 82724041 - Pole4 protein_coding processed_transcript MGP_CASTEiJ_T0078414.1 MGP_CASTEiJ_G0029993.1 mouse_genomes_project 6 82719532 82724039 - Pole4 protein_coding processed_transcript MGP_CASTEiJ_T0014795.1 MGP_CASTEiJ_G0012958.1 mouse_genomes_project 6 45843184 45843563 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099973.1 MGP_CASTEiJ_G0036886.1 mouse_genomes_project 6 114069323 114069430 - Gm23002 snRNA snRNA MGP_CASTEiJ_T0101641.1 MGP_CASTEiJ_G0038488.1 mouse_genomes_project 6 65612950 65646679 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101642.1 MGP_CASTEiJ_G0038488.1 mouse_genomes_project 6 65623760 65647776 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101643.1 MGP_CASTEiJ_G0038488.1 mouse_genomes_project 6 65646445 65647179 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0014747.1 MGP_CASTEiJ_G0012910.1 mouse_genomes_project 6 19905223 19905988 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010474.1 MGP_CASTEiJ_G0008662.1 mouse_genomes_project 6 69609725 69610808 - miRNA miRNA MGP_CASTEiJ_T0014892.1 MGP_CASTEiJ_G0013055.1 mouse_genomes_project 6 72678422 72679008 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099938.1 MGP_CASTEiJ_G0036851.1 mouse_genomes_project 6 16639660 16639766 + Gm22828 snRNA snRNA MGP_CASTEiJ_T0077624.1 MGP_CASTEiJ_G0029804.1 mouse_genomes_project 6 46804374 46811186 + MGP_CASTEiJ_P0077624 Gimap4 protein_coding protein_coding MGP_CASTEiJ_T0077625.1 MGP_CASTEiJ_G0029804.1 mouse_genomes_project 6 46804403 46811868 + MGP_CASTEiJ_P0077625 Gimap4 protein_coding protein_coding MGP_CASTEiJ_T0077626.1 MGP_CASTEiJ_G0029804.1 mouse_genomes_project 6 46804403 46811868 + MGP_CASTEiJ_P0077626 Gimap4 protein_coding protein_coding MGP_CASTEiJ_T0077627.1 MGP_CASTEiJ_G0029804.1 mouse_genomes_project 6 46804406 46811865 + MGP_CASTEiJ_P0077627 Gimap4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077628.1 MGP_CASTEiJ_G0029804.1 mouse_genomes_project 6 46804406 46811685 + MGP_CASTEiJ_P0077628 Gimap4 protein_coding protein_coding MGP_CASTEiJ_T0077629.1 MGP_CASTEiJ_G0029804.1 mouse_genomes_project 6 46804407 46811868 + MGP_CASTEiJ_P0077629 Gimap4 protein_coding protein_coding MGP_CASTEiJ_T0004980.1 MGP_CASTEiJ_G0004260.1 mouse_genomes_project 6 147623772 147648501 + Sox5os3 antisense antisense MGP_CASTEiJ_T0004981.1 MGP_CASTEiJ_G0004260.1 mouse_genomes_project 6 147632037 147648251 + Sox5os3 antisense antisense MGP_CASTEiJ_T0014806.1 MGP_CASTEiJ_G0012969.1 mouse_genomes_project 6 47218742 47219340 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002094.1 MGP_CASTEiJ_G0002014.1 mouse_genomes_project 6 139563682 139564485 + TEC TEC MGP_CASTEiJ_T0004871.1 MGP_CASTEiJ_G0004181.1 mouse_genomes_project 6 86885790 86896261 - A430078I02Rik antisense antisense MGP_CASTEiJ_T0004872.1 MGP_CASTEiJ_G0004181.1 mouse_genomes_project 6 86886313 86896321 - A430078I02Rik antisense antisense MGP_CASTEiJ_T0078382.1 MGP_CASTEiJ_G0029986.1 mouse_genomes_project 6 78982571 78984010 + MGP_CASTEiJ_P0078382 Tuba1b protein_coding protein_coding MGP_CASTEiJ_T0076631.1 MGP_CASTEiJ_G0029574.1 mouse_genomes_project 6 15330887 15392688 - Cttnbp2 protein_coding retained_intron MGP_CASTEiJ_T0076632.1 MGP_CASTEiJ_G0029574.1 mouse_genomes_project 6 15330974 15398818 - MGP_CASTEiJ_P0076632 Cttnbp2 protein_coding protein_coding MGP_CASTEiJ_T0076633.1 MGP_CASTEiJ_G0029574.1 mouse_genomes_project 6 15331116 15492808 - MGP_CASTEiJ_P0076633 Cttnbp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076634.1 MGP_CASTEiJ_G0029574.1 mouse_genomes_project 6 15331629 15492880 - MGP_CASTEiJ_P0076634 Cttnbp2 protein_coding protein_coding MGP_CASTEiJ_T0076635.1 MGP_CASTEiJ_G0029574.1 mouse_genomes_project 6 15354805 15373915 - MGP_CASTEiJ_P0076635 Cttnbp2 protein_coding protein_coding MGP_CASTEiJ_T0076636.1 MGP_CASTEiJ_G0029574.1 mouse_genomes_project 6 15396298 15492858 - Cttnbp2 protein_coding retained_intron MGP_CASTEiJ_T0076637.1 MGP_CASTEiJ_G0029574.1 mouse_genomes_project 6 15399617 15491156 - MGP_CASTEiJ_P0076637 Cttnbp2 protein_coding protein_coding MGP_CASTEiJ_T0076638.1 MGP_CASTEiJ_G0029574.1 mouse_genomes_project 6 15412374 15479539 - MGP_CASTEiJ_P0076638 Cttnbp2 protein_coding protein_coding MGP_CASTEiJ_T0076639.1 MGP_CASTEiJ_G0029574.1 mouse_genomes_project 6 15479108 15492902 - Cttnbp2 protein_coding retained_intron MGP_CASTEiJ_T0008539.1 MGP_CASTEiJ_G0006912.1 mouse_genomes_project 6 145849479 145849866 + 4930434O05Rik lincRNA lincRNA MGP_CASTEiJ_T0076942.1 MGP_CASTEiJ_G0029634.1 mouse_genomes_project 6 27787614 27841919 + MGP_CASTEiJ_P0076942 Klhdc10 protein_coding protein_coding MGP_CASTEiJ_T0076943.1 MGP_CASTEiJ_G0029634.1 mouse_genomes_project 6 27787740 27843814 + MGP_CASTEiJ_P0076943 Klhdc10 protein_coding protein_coding MGP_CASTEiJ_T0076944.1 MGP_CASTEiJ_G0029634.1 mouse_genomes_project 6 27787744 27839193 + MGP_CASTEiJ_P0076944 Klhdc10 protein_coding protein_coding MGP_CASTEiJ_T0076945.1 MGP_CASTEiJ_G0029634.1 mouse_genomes_project 6 27805272 27836083 + MGP_CASTEiJ_P0076945 Klhdc10 protein_coding protein_coding MGP_CASTEiJ_T0076946.1 MGP_CASTEiJ_G0029634.1 mouse_genomes_project 6 27832389 27839472 + Klhdc10 protein_coding retained_intron MGP_CASTEiJ_T0078103.1 MGP_CASTEiJ_G0029924.1 mouse_genomes_project 6 65110039 65278497 + MGP_CASTEiJ_P0078103 Prdm5 protein_coding protein_coding MGP_CASTEiJ_T0078104.1 MGP_CASTEiJ_G0029924.1 mouse_genomes_project 6 65110073 65170183 + Prdm5 protein_coding retained_intron MGP_CASTEiJ_T0078105.1 MGP_CASTEiJ_G0029924.1 mouse_genomes_project 6 65110073 65278494 + MGP_CASTEiJ_P0078105 Prdm5 protein_coding protein_coding MGP_CASTEiJ_T0078106.1 MGP_CASTEiJ_G0029924.1 mouse_genomes_project 6 65110076 65278419 + MGP_CASTEiJ_P0078106 Prdm5 protein_coding protein_coding MGP_CASTEiJ_T0078107.1 MGP_CASTEiJ_G0029924.1 mouse_genomes_project 6 65110145 65116641 + Prdm5 protein_coding retained_intron MGP_CASTEiJ_T0078108.1 MGP_CASTEiJ_G0029924.1 mouse_genomes_project 6 65110212 65278256 + MGP_CASTEiJ_P0078108 Prdm5 protein_coding protein_coding MGP_CASTEiJ_T0078109.1 MGP_CASTEiJ_G0029924.1 mouse_genomes_project 6 65277214 65279131 + Prdm5 protein_coding retained_intron MGP_CASTEiJ_T0080474.1 MGP_CASTEiJ_G0030386.1 mouse_genomes_project 6 128857734 128862136 - MGP_CASTEiJ_P0080474 Kcna1 protein_coding protein_coding MGP_CASTEiJ_T0080475.1 MGP_CASTEiJ_G0030386.1 mouse_genomes_project 6 128859002 128862153 - MGP_CASTEiJ_P0080475 Kcna1 protein_coding protein_coding MGP_CASTEiJ_T0080476.1 MGP_CASTEiJ_G0030386.1 mouse_genomes_project 6 128861114 128863726 - Kcna1 protein_coding processed_transcript MGP_CASTEiJ_T0076808.1 MGP_CASTEiJ_G0029615.1 mouse_genomes_project 6 26562382 26565084 + MGP_CASTEiJ_P0076808 Hilpda protein_coding protein_coding MGP_CASTEiJ_T0076809.1 MGP_CASTEiJ_G0029615.1 mouse_genomes_project 6 26562520 26565344 + MGP_CASTEiJ_P0076809 Hilpda protein_coding protein_coding MGP_CASTEiJ_T0002612.1 MGP_CASTEiJ_G0002504.1 mouse_genomes_project 6 39158916 39159404 + MGP_CASTEiJ_P0002612 Trbv29 TR_V_gene TR_V_gene MGP_CASTEiJ_T0080137.1 MGP_CASTEiJ_G0030315.1 mouse_genomes_project 6 124451091 124459758 + MGP_CASTEiJ_P0080137 Aicda protein_coding protein_coding MGP_CASTEiJ_T0080138.1 MGP_CASTEiJ_G0030315.1 mouse_genomes_project 6 124451104 124461464 + MGP_CASTEiJ_P0080138 Aicda protein_coding protein_coding MGP_CASTEiJ_T0099953.1 MGP_CASTEiJ_G0036866.1 mouse_genomes_project 6 62436774 62436880 - Gm22212 snRNA snRNA MGP_CASTEiJ_T0008308.1 MGP_CASTEiJ_G0006741.1 mouse_genomes_project 6 14260250 14260859 + Gm29591 lincRNA lincRNA MGP_CASTEiJ_T0079260.1 MGP_CASTEiJ_G0030160.1 mouse_genomes_project 6 98031188 98059079 - MGP_CASTEiJ_P0079260 Tmf1 protein_coding protein_coding MGP_CASTEiJ_T0079261.1 MGP_CASTEiJ_G0030160.1 mouse_genomes_project 6 98033243 98058994 - MGP_CASTEiJ_P0079261 Tmf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079262.1 MGP_CASTEiJ_G0030160.1 mouse_genomes_project 6 98039858 98048752 - Tmf1 protein_coding processed_transcript MGP_CASTEiJ_T0014820.1 MGP_CASTEiJ_G0012983.1 mouse_genomes_project 6 51464917 51465458 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076713.1 MGP_CASTEiJ_G0029592.1 mouse_genomes_project 6 21690947 21695148 - Ndufa5 protein_coding retained_intron MGP_CASTEiJ_T0076714.1 MGP_CASTEiJ_G0029592.1 mouse_genomes_project 6 21690947 21699953 - MGP_CASTEiJ_P0076714 Ndufa5 protein_coding protein_coding MGP_CASTEiJ_T0076715.1 MGP_CASTEiJ_G0029592.1 mouse_genomes_project 6 21690947 21700396 - MGP_CASTEiJ_P0076715 Ndufa5 protein_coding protein_coding MGP_CASTEiJ_T0076716.1 MGP_CASTEiJ_G0029592.1 mouse_genomes_project 6 21690948 21699909 - Ndufa5 protein_coding processed_transcript MGP_CASTEiJ_T0004780.1 MGP_CASTEiJ_G0004114.1 mouse_genomes_project 6 25444815 25493100 + 6530409C15Rik antisense antisense MGP_CASTEiJ_T0004781.1 MGP_CASTEiJ_G0004114.1 mouse_genomes_project 6 25444836 25448105 + 6530409C15Rik antisense antisense MGP_CASTEiJ_T0014887.1 MGP_CASTEiJ_G0013050.1 mouse_genomes_project 6 71262307 71262888 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101158.1 MGP_CASTEiJ_G0038071.1 mouse_genomes_project 6 22376123 22376246 - Gm22529 snoRNA snoRNA MGP_CASTEiJ_T0011329.1 MGP_CASTEiJ_G0009517.1 mouse_genomes_project 6 100569297 100569544 + Gm24936 misc_RNA misc_RNA MGP_CASTEiJ_T0102406.1 MGP_CASTEiJ_G0039131.1 mouse_genomes_project 6 70061559 70061707 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0078286.1 MGP_CASTEiJ_G0029964.1 mouse_genomes_project 6 72037017 72042268 - MGP_CASTEiJ_P0078286 Vamp8 protein_coding protein_coding MGP_CASTEiJ_T0078287.1 MGP_CASTEiJ_G0029964.1 mouse_genomes_project 6 72037022 72041476 - MGP_CASTEiJ_P0078287 Vamp8 protein_coding protein_coding MGP_CASTEiJ_T0008422.1 MGP_CASTEiJ_G0006824.1 mouse_genomes_project 6 78830721 78831044 - Gm29005 lincRNA lincRNA MGP_CASTEiJ_T0015099.1 MGP_CASTEiJ_G0013262.1 mouse_genomes_project 6 150344822 150345625 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076849.1 MGP_CASTEiJ_G0029623.1 mouse_genomes_project 6 26775054 26777085 + MGP_CASTEiJ_P0076849 Gm9047 protein_coding protein_coding MGP_CASTEiJ_T0001972.1 MGP_CASTEiJ_G0001893.1 mouse_genomes_project 6 83194686 83198027 - TEC TEC MGP_CASTEiJ_T0002633.1 MGP_CASTEiJ_G0002523.1 mouse_genomes_project 6 38936764 38937040 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0078112.1 MGP_CASTEiJ_G0029927.1 mouse_genomes_project 6 65921611 65934322 + MGP_CASTEiJ_P0078112 Mad2l1 protein_coding protein_coding MGP_CASTEiJ_T0078113.1 MGP_CASTEiJ_G0029927.1 mouse_genomes_project 6 65921646 65928125 + Mad2l1 protein_coding retained_intron MGP_CASTEiJ_T0078114.1 MGP_CASTEiJ_G0029927.1 mouse_genomes_project 6 65921892 65922287 + Mad2l1 protein_coding processed_transcript MGP_CASTEiJ_T0079418.1 MGP_CASTEiJ_G0030190.1 mouse_genomes_project 6 110176357 110208447 + MGP_CASTEiJ_P0079418 Edem1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079419.1 MGP_CASTEiJ_G0030190.1 mouse_genomes_project 6 110176390 110208439 + MGP_CASTEiJ_P0079419 Edem1 protein_coding protein_coding MGP_CASTEiJ_T0079420.1 MGP_CASTEiJ_G0030190.1 mouse_genomes_project 6 110176411 110204871 + MGP_CASTEiJ_P0079420 Edem1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079421.1 MGP_CASTEiJ_G0030190.1 mouse_genomes_project 6 110184095 110190423 + Edem1 protein_coding processed_transcript MGP_CASTEiJ_T0079422.1 MGP_CASTEiJ_G0030190.1 mouse_genomes_project 6 110196678 110200725 + Edem1 protein_coding retained_intron MGP_CASTEiJ_T0079423.1 MGP_CASTEiJ_G0030190.1 mouse_genomes_project 6 110201480 110204637 + Edem1 protein_coding retained_intron MGP_CASTEiJ_T0076312.1 MGP_CASTEiJ_G0029516.1 mouse_genomes_project 6 64803 119526 - MGP_CASTEiJ_P0076312 Samd9l protein_coding protein_coding MGP_CASTEiJ_T0076313.1 MGP_CASTEiJ_G0029516.1 mouse_genomes_project 6 69496 104855 - MGP_CASTEiJ_P0076313 Samd9l protein_coding protein_coding MGP_CASTEiJ_T0010490.1 MGP_CASTEiJ_G0008678.1 mouse_genomes_project 6 103932618 103932720 + Mir6373 miRNA miRNA MGP_CASTEiJ_T0076717.1 MGP_CASTEiJ_G0029593.1 mouse_genomes_project 6 21700526 21747558 + MGP_CASTEiJ_P0076717 Asb15 protein_coding protein_coding MGP_CASTEiJ_T0076718.1 MGP_CASTEiJ_G0029593.1 mouse_genomes_project 6 21728537 21749776 + MGP_CASTEiJ_P0076718 Asb15 protein_coding protein_coding MGP_CASTEiJ_T0008467.1 MGP_CASTEiJ_G0006855.1 mouse_genomes_project 6 100896608 100909103 - Gm43067 lincRNA lincRNA MGP_CASTEiJ_T0000145.1 MGP_CASTEiJ_G0000111.1 mouse_genomes_project 6 66963693 66970401 + MGP_CASTEiJ_P0000145 Igkv2-137 IG_V_gene IG_V_gene MGP_CASTEiJ_T0079145.1 MGP_CASTEiJ_G0030137.1 mouse_genomes_project 6 92347941 92429556 + MGP_CASTEiJ_P0079145 Slc6a6 protein_coding protein_coding MGP_CASTEiJ_T0079146.1 MGP_CASTEiJ_G0030137.1 mouse_genomes_project 6 92347957 92402962 + Slc6a6 protein_coding processed_transcript MGP_CASTEiJ_T0079147.1 MGP_CASTEiJ_G0030137.1 mouse_genomes_project 6 92347983 92394743 + Slc6a6 protein_coding retained_intron MGP_CASTEiJ_T0079148.1 MGP_CASTEiJ_G0030137.1 mouse_genomes_project 6 92348008 92392750 + MGP_CASTEiJ_P0079148 Slc6a6 protein_coding protein_coding MGP_CASTEiJ_T0079149.1 MGP_CASTEiJ_G0030137.1 mouse_genomes_project 6 92348016 92392785 + MGP_CASTEiJ_P0079149 Slc6a6 protein_coding protein_coding MGP_CASTEiJ_T0079150.1 MGP_CASTEiJ_G0030137.1 mouse_genomes_project 6 92348037 92363007 + Slc6a6 protein_coding retained_intron MGP_CASTEiJ_T0079151.1 MGP_CASTEiJ_G0030137.1 mouse_genomes_project 6 92365350 92392671 + MGP_CASTEiJ_P0079151 Slc6a6 protein_coding protein_coding MGP_CASTEiJ_T0079152.1 MGP_CASTEiJ_G0030137.1 mouse_genomes_project 6 92389631 92429554 + MGP_CASTEiJ_P0079152 Slc6a6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079153.1 MGP_CASTEiJ_G0030137.1 mouse_genomes_project 6 92392766 92412790 + MGP_CASTEiJ_P0079153 Slc6a6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079154.1 MGP_CASTEiJ_G0030137.1 mouse_genomes_project 6 92407406 92408854 + Slc6a6 protein_coding retained_intron MGP_CASTEiJ_T0079155.1 MGP_CASTEiJ_G0030137.1 mouse_genomes_project 6 92418847 92420634 + Slc6a6 protein_coding retained_intron MGP_CASTEiJ_T0079156.1 MGP_CASTEiJ_G0030137.1 mouse_genomes_project 6 92420647 92423242 + Slc6a6 protein_coding retained_intron MGP_CASTEiJ_T0078815.1 MGP_CASTEiJ_G0030070.1 mouse_genomes_project 6 87117125 87159707 - MGP_CASTEiJ_P0078815 Gmcl1 protein_coding protein_coding MGP_CASTEiJ_T0078816.1 MGP_CASTEiJ_G0030070.1 mouse_genomes_project 6 87139547 87142285 - Gmcl1 protein_coding retained_intron MGP_CASTEiJ_T0078817.1 MGP_CASTEiJ_G0030070.1 mouse_genomes_project 6 87139632 87143765 - Gmcl1 protein_coding retained_intron MGP_CASTEiJ_T0078818.1 MGP_CASTEiJ_G0030070.1 mouse_genomes_project 6 87145363 87159564 - MGP_CASTEiJ_P0078818 Gmcl1 protein_coding protein_coding MGP_CASTEiJ_T0101215.1 MGP_CASTEiJ_G0038128.1 mouse_genomes_project 6 133853715 133853849 - Gm22362 snoRNA snoRNA MGP_CASTEiJ_T0080291.1 MGP_CASTEiJ_G0030352.1 mouse_genomes_project 6 126917415 126931848 - MGP_CASTEiJ_P0080291 Usp5 protein_coding protein_coding MGP_CASTEiJ_T0080292.1 MGP_CASTEiJ_G0030352.1 mouse_genomes_project 6 126917434 126931799 - MGP_CASTEiJ_P0080292 Usp5 protein_coding protein_coding MGP_CASTEiJ_T0080293.1 MGP_CASTEiJ_G0030352.1 mouse_genomes_project 6 126917820 126921026 - Usp5 protein_coding retained_intron MGP_CASTEiJ_T0080294.1 MGP_CASTEiJ_G0030352.1 mouse_genomes_project 6 126919634 126920282 - Usp5 protein_coding retained_intron MGP_CASTEiJ_T0080295.1 MGP_CASTEiJ_G0030352.1 mouse_genomes_project 6 126924163 126925858 - Usp5 protein_coding retained_intron MGP_CASTEiJ_T0080296.1 MGP_CASTEiJ_G0030352.1 mouse_genomes_project 6 126925007 126931772 - MGP_CASTEiJ_P0080296 Usp5 protein_coding protein_coding MGP_CASTEiJ_T0080297.1 MGP_CASTEiJ_G0030352.1 mouse_genomes_project 6 126925115 126926012 - Usp5 protein_coding retained_intron MGP_CASTEiJ_T0080298.1 MGP_CASTEiJ_G0030352.1 mouse_genomes_project 6 126925231 126926589 - Usp5 protein_coding retained_intron MGP_CASTEiJ_T0080299.1 MGP_CASTEiJ_G0030352.1 mouse_genomes_project 6 126926524 126931259 - MGP_CASTEiJ_P0080299 Usp5 protein_coding protein_coding MGP_CASTEiJ_T0079604.1 MGP_CASTEiJ_G0030222.1 mouse_genomes_project 6 115239477 115254499 + MGP_CASTEiJ_P0079604 Tatdn2 protein_coding protein_coding MGP_CASTEiJ_T0079605.1 MGP_CASTEiJ_G0030222.1 mouse_genomes_project 6 115239986 115254379 + MGP_CASTEiJ_P0079605 Tatdn2 protein_coding protein_coding MGP_CASTEiJ_T0079606.1 MGP_CASTEiJ_G0030222.1 mouse_genomes_project 6 115240095 115253635 + MGP_CASTEiJ_P0079606 Tatdn2 protein_coding protein_coding MGP_CASTEiJ_T0079607.1 MGP_CASTEiJ_G0030222.1 mouse_genomes_project 6 115248256 115254496 + MGP_CASTEiJ_P0079607 Tatdn2 protein_coding protein_coding MGP_CASTEiJ_T0079608.1 MGP_CASTEiJ_G0030222.1 mouse_genomes_project 6 115250706 115253879 + MGP_CASTEiJ_P0079608 Tatdn2 protein_coding protein_coding MGP_CASTEiJ_T0080101.1 MGP_CASTEiJ_G0030310.1 mouse_genomes_project 6 124143045 124143896 + MGP_CASTEiJ_P0080101 protein_coding protein_coding MGP_CASTEiJ_T0010514.1 MGP_CASTEiJ_G0008702.1 mouse_genomes_project 6 132212563 132212672 + Mir680-1 miRNA miRNA MGP_CASTEiJ_T0078717.1 MGP_CASTEiJ_G0030054.1 mouse_genomes_project 6 86267196 86277811 - MGP_CASTEiJ_P0078717 Nat8f1 protein_coding protein_coding MGP_CASTEiJ_T0078718.1 MGP_CASTEiJ_G0030054.1 mouse_genomes_project 6 86267204 86277790 - Nat8f1 protein_coding processed_transcript MGP_CASTEiJ_T0078719.1 MGP_CASTEiJ_G0030054.1 mouse_genomes_project 6 86269912 86277728 - MGP_CASTEiJ_P0078719 Nat8f1 protein_coding protein_coding MGP_CASTEiJ_T0079059.1 MGP_CASTEiJ_G0030120.1 mouse_genomes_project 6 90917536 90921770 + MGP_CASTEiJ_P0079059 BC048671 protein_coding protein_coding MGP_CASTEiJ_T0079060.1 MGP_CASTEiJ_G0030120.1 mouse_genomes_project 6 90918433 90921770 + MGP_CASTEiJ_P0079060 BC048671 protein_coding protein_coding MGP_CASTEiJ_T0004990.1 MGP_CASTEiJ_G0004269.1 mouse_genomes_project 6 150521451 150551096 - Gm6288 antisense antisense MGP_CASTEiJ_T0004991.1 MGP_CASTEiJ_G0004269.1 mouse_genomes_project 6 150550412 150551327 - Gm6288 antisense antisense MGP_CASTEiJ_T0014728.1 MGP_CASTEiJ_G0012891.1 mouse_genomes_project 6 9856842 9858849 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081246.1 MGP_CASTEiJ_G0030569.1 mouse_genomes_project 6 150084304 150092127 + Mrps35 protein_coding retained_intron MGP_CASTEiJ_T0081247.1 MGP_CASTEiJ_G0030569.1 mouse_genomes_project 6 150084304 150116981 + MGP_CASTEiJ_P0081247 Mrps35 protein_coding protein_coding MGP_CASTEiJ_T0081248.1 MGP_CASTEiJ_G0030569.1 mouse_genomes_project 6 150086133 150097579 + MGP_CASTEiJ_P0081248 Mrps35 protein_coding protein_coding MGP_CASTEiJ_T0081249.1 MGP_CASTEiJ_G0030569.1 mouse_genomes_project 6 150101949 150113771 + Mrps35 protein_coding processed_transcript MGP_CASTEiJ_T0081250.1 MGP_CASTEiJ_G0030569.1 mouse_genomes_project 6 150102962 150113850 + Mrps35 protein_coding processed_transcript MGP_CASTEiJ_T0008451.1 MGP_CASTEiJ_G0006844.1 mouse_genomes_project 6 89793745 89854757 - lincRNA lincRNA MGP_CASTEiJ_T0008452.1 MGP_CASTEiJ_G0006844.1 mouse_genomes_project 6 89793751 89797447 - lincRNA lincRNA MGP_CASTEiJ_T0008454.1 MGP_CASTEiJ_G0006844.1 mouse_genomes_project 6 89853682 89854726 - lincRNA lincRNA MGP_CASTEiJ_T0099950.1 MGP_CASTEiJ_G0036863.1 mouse_genomes_project 6 40659556 40659664 - Gm22363 snRNA snRNA MGP_CASTEiJ_T0080712.1 MGP_CASTEiJ_G0030450.1 mouse_genomes_project 6 134157698 134158625 - MGP_CASTEiJ_P0080712 Tas2r106 protein_coding protein_coding MGP_CASTEiJ_T0000279.1 MGP_CASTEiJ_G0000228.1 mouse_genomes_project 6 68284704 68285415 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0008394.1 MGP_CASTEiJ_G0006798.1 mouse_genomes_project 6 50894518 50898682 + Gm44028 lincRNA lincRNA MGP_CASTEiJ_T0078010.1 MGP_CASTEiJ_G0029901.1 mouse_genomes_project 6 56554036 56555056 - MGP_CASTEiJ_P0078010 Vmn1r26 protein_coding protein_coding MGP_CASTEiJ_T0015092.1 MGP_CASTEiJ_G0013255.1 mouse_genomes_project 6 146001235 146001704 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076712.1 MGP_CASTEiJ_G0029591.1 mouse_genomes_project 6 21618088 21685603 - MGP_CASTEiJ_P0076712 Iqub protein_coding protein_coding MGP_CASTEiJ_T0079719.1 MGP_CASTEiJ_G0030241.1 mouse_genomes_project 6 117299020 117333408 + MGP_CASTEiJ_P0079719 Cand2 protein_coding protein_coding MGP_CASTEiJ_T0010455.1 MGP_CASTEiJ_G0008643.1 mouse_genomes_project 6 27519939 27520014 - Mir182 miRNA miRNA MGP_CASTEiJ_T0080756.1 MGP_CASTEiJ_G0030478.1 mouse_genomes_project 6 136925178 136950056 - MGP_CASTEiJ_P0080756 Mansc1 protein_coding protein_coding MGP_CASTEiJ_T0008442.1 MGP_CASTEiJ_G0006838.1 mouse_genomes_project 6 87159812 87163461 + Gm44036 lincRNA lincRNA MGP_CASTEiJ_T0008372.1 MGP_CASTEiJ_G0006783.1 mouse_genomes_project 6 46877121 46878163 + 4833403J16Rik lincRNA lincRNA MGP_CASTEiJ_T0014737.1 MGP_CASTEiJ_G0012900.1 mouse_genomes_project 6 14642621 14643874 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002043.1 MGP_CASTEiJ_G0001964.1 mouse_genomes_project 6 104783791 104786726 + TEC TEC MGP_CASTEiJ_T0099949.1 MGP_CASTEiJ_G0036862.1 mouse_genomes_project 6 40201237 40201344 - Gm24611 snRNA snRNA MGP_CASTEiJ_T0000182.1 MGP_CASTEiJ_G0000138.1 mouse_genomes_project 6 68983719 68984245 - MGP_CASTEiJ_P0000182 Igkv4-53 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000183.1 MGP_CASTEiJ_G0000138.1 mouse_genomes_project 6 68983719 68983995 - MGP_CASTEiJ_P0000183 Igkv4-53 IG_V_gene IG_V_gene MGP_CASTEiJ_T0079048.1 MGP_CASTEiJ_G0030111.1 mouse_genomes_project 6 90303283 90501915 + MGP_CASTEiJ_P0079048 Vmn1r41 protein_coding protein_coding MGP_CASTEiJ_T0077707.1 MGP_CASTEiJ_G0029823.1 mouse_genomes_project 6 47555100 47641053 + MGP_CASTEiJ_P0077707 Stk31 protein_coding protein_coding MGP_CASTEiJ_T0077708.1 MGP_CASTEiJ_G0029823.1 mouse_genomes_project 6 47555131 47640904 + MGP_CASTEiJ_P0077708 Stk31 protein_coding protein_coding MGP_CASTEiJ_T0077709.1 MGP_CASTEiJ_G0029823.1 mouse_genomes_project 6 47555131 47640904 + MGP_CASTEiJ_P0077709 Stk31 protein_coding protein_coding MGP_CASTEiJ_T0077710.1 MGP_CASTEiJ_G0029823.1 mouse_genomes_project 6 47601523 47641052 + MGP_CASTEiJ_P0077710 Stk31 protein_coding protein_coding MGP_CASTEiJ_T0011334.1 MGP_CASTEiJ_G0009522.1 mouse_genomes_project 6 113445206 113445515 + Gm25454 misc_RNA misc_RNA MGP_CASTEiJ_T0079269.1 MGP_CASTEiJ_G0030162.1 mouse_genomes_project 6 98090941 98118124 + MGP_CASTEiJ_P0079269 Arl6ip5 protein_coding protein_coding MGP_CASTEiJ_T0004963.1 MGP_CASTEiJ_G0004245.1 mouse_genomes_project 6 136608605 136708717 - Gm44293 antisense antisense MGP_CASTEiJ_T0080804.1 MGP_CASTEiJ_G0030488.1 mouse_genomes_project 6 137512873 137546685 - MGP_CASTEiJ_P0080804 Hebp1 protein_coding protein_coding MGP_CASTEiJ_T0080805.1 MGP_CASTEiJ_G0030488.1 mouse_genomes_project 6 137529648 137546662 - Hebp1 protein_coding processed_transcript MGP_CASTEiJ_T0080806.1 MGP_CASTEiJ_G0030488.1 mouse_genomes_project 6 137532059 137577581 - Hebp1 protein_coding processed_transcript MGP_CASTEiJ_T0080807.1 MGP_CASTEiJ_G0030488.1 mouse_genomes_project 6 137543995 137546605 - Hebp1 protein_coding retained_intron MGP_CASTEiJ_T0014726.1 MGP_CASTEiJ_G0012889.1 mouse_genomes_project 6 9345033 9347000 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008401.1 MGP_CASTEiJ_G0006804.1 mouse_genomes_project 6 55116534 55196331 - Gm8239 lincRNA lincRNA MGP_CASTEiJ_T0002595.1 MGP_CASTEiJ_G0002491.1 mouse_genomes_project 6 38986618 38987080 + MGP_CASTEiJ_P0002595 Trbv13-1 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002596.1 MGP_CASTEiJ_G0002491.1 mouse_genomes_project 6 38986647 38987080 + MGP_CASTEiJ_P0002596 Trbv13-1 TR_V_gene TR_V_gene MGP_CASTEiJ_T0001964.1 MGP_CASTEiJ_G0001885.1 mouse_genomes_project 6 80276479 80278225 + TEC TEC MGP_CASTEiJ_T0080611.1 MGP_CASTEiJ_G0030417.1 mouse_genomes_project 6 131234728 131247519 - MGP_CASTEiJ_P0080611 protein_coding protein_coding MGP_CASTEiJ_T0080612.1 MGP_CASTEiJ_G0030417.1 mouse_genomes_project 6 131235405 131247501 - MGP_CASTEiJ_P0080612 protein_coding protein_coding MGP_CASTEiJ_T0080613.1 MGP_CASTEiJ_G0030417.1 mouse_genomes_project 6 131236142 131247478 - MGP_CASTEiJ_P0080613 protein_coding protein_coding MGP_CASTEiJ_T0080614.1 MGP_CASTEiJ_G0030417.1 mouse_genomes_project 6 131240161 131247493 - MGP_CASTEiJ_P0080614 protein_coding protein_coding MGP_CASTEiJ_T0004888.1 MGP_CASTEiJ_G0004188.1 mouse_genomes_project 6 88732668 88735750 - 1700031F10Rik antisense antisense MGP_CASTEiJ_T0004889.1 MGP_CASTEiJ_G0004188.1 mouse_genomes_project 6 88732670 88733712 - 1700031F10Rik antisense antisense MGP_CASTEiJ_T0014993.1 MGP_CASTEiJ_G0013156.1 mouse_genomes_project 6 116198829 116203240 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015008.1 MGP_CASTEiJ_G0013171.1 mouse_genomes_project 6 122835529 122835657 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078884.1 MGP_CASTEiJ_G0030086.1 mouse_genomes_project 6 88272553 88295343 - MGP_CASTEiJ_P0078884 Rab43 protein_coding protein_coding MGP_CASTEiJ_T0078885.1 MGP_CASTEiJ_G0030086.1 mouse_genomes_project 6 88272553 88293317 - MGP_CASTEiJ_P0078885 Rab43 protein_coding protein_coding MGP_CASTEiJ_T0078887.1 MGP_CASTEiJ_G0030086.1 mouse_genomes_project 6 88272565 88273777 - Rab43 protein_coding processed_transcript MGP_CASTEiJ_T0078888.1 MGP_CASTEiJ_G0030086.1 mouse_genomes_project 6 88275205 88293320 - Rab43 protein_coding processed_transcript MGP_CASTEiJ_T0078889.1 MGP_CASTEiJ_G0030086.1 mouse_genomes_project 6 88275764 88295728 - Rab43 protein_coding processed_transcript MGP_CASTEiJ_T0078891.1 MGP_CASTEiJ_G0030086.1 mouse_genomes_project 6 88276406 88295662 - Rab43 protein_coding processed_transcript MGP_CASTEiJ_T0078892.1 MGP_CASTEiJ_G0030086.1 mouse_genomes_project 6 88277577 88295343 - MGP_CASTEiJ_P0078892 Rab43 protein_coding protein_coding MGP_CASTEiJ_T0077597.1 MGP_CASTEiJ_G0029795.1 mouse_genomes_project 6 46681440 46684385 - Rarres2 protein_coding retained_intron MGP_CASTEiJ_T0077598.1 MGP_CASTEiJ_G0029795.1 mouse_genomes_project 6 46681440 46684427 - MGP_CASTEiJ_P0077598 Rarres2 protein_coding protein_coding MGP_CASTEiJ_T0077599.1 MGP_CASTEiJ_G0029795.1 mouse_genomes_project 6 46681440 46684494 - MGP_CASTEiJ_P0077599 Rarres2 protein_coding protein_coding MGP_CASTEiJ_T0077600.1 MGP_CASTEiJ_G0029795.1 mouse_genomes_project 6 46681440 46684526 - MGP_CASTEiJ_P0077600 Rarres2 protein_coding protein_coding MGP_CASTEiJ_T0077601.1 MGP_CASTEiJ_G0029795.1 mouse_genomes_project 6 46681454 46684528 - MGP_CASTEiJ_P0077601 Rarres2 protein_coding protein_coding MGP_CASTEiJ_T0010472.1 MGP_CASTEiJ_G0008660.1 mouse_genomes_project 6 54063521 54063631 + Gm44352 miRNA miRNA MGP_CASTEiJ_T0001944.1 MGP_CASTEiJ_G0001865.1 mouse_genomes_project 6 72307247 72310678 - TEC TEC MGP_CASTEiJ_T0078089.1 MGP_CASTEiJ_G0029920.1 mouse_genomes_project 6 64440810 64471775 - MGP_CASTEiJ_P0078089 Hpgds protein_coding protein_coding MGP_CASTEiJ_T0078090.1 MGP_CASTEiJ_G0029920.1 mouse_genomes_project 6 64442545 64446443 - Hpgds protein_coding retained_intron MGP_CASTEiJ_T0078091.1 MGP_CASTEiJ_G0029920.1 mouse_genomes_project 6 64455572 64461853 - Hpgds protein_coding retained_intron MGP_CASTEiJ_T0076691.1 MGP_CASTEiJ_G0029586.1 mouse_genomes_project 6 20473499 21028675 - MGP_CASTEiJ_P0076691 Cadps2 protein_coding protein_coding MGP_CASTEiJ_T0076692.1 MGP_CASTEiJ_G0029586.1 mouse_genomes_project 6 20473500 21028674 - MGP_CASTEiJ_P0076692 Cadps2 protein_coding protein_coding MGP_CASTEiJ_T0076693.1 MGP_CASTEiJ_G0029586.1 mouse_genomes_project 6 20473500 21028535 - MGP_CASTEiJ_P0076693 Cadps2 protein_coding protein_coding MGP_CASTEiJ_T0076694.1 MGP_CASTEiJ_G0029586.1 mouse_genomes_project 6 20473550 21028479 - MGP_CASTEiJ_P0076694 Cadps2 protein_coding protein_coding MGP_CASTEiJ_T0076695.1 MGP_CASTEiJ_G0029586.1 mouse_genomes_project 6 20473565 21028391 - MGP_CASTEiJ_P0076695 Cadps2 protein_coding protein_coding MGP_CASTEiJ_T0076696.1 MGP_CASTEiJ_G0029586.1 mouse_genomes_project 6 20473566 21028478 - MGP_CASTEiJ_P0076696 Cadps2 protein_coding protein_coding MGP_CASTEiJ_T0076697.1 MGP_CASTEiJ_G0029586.1 mouse_genomes_project 6 20473570 20575011 - Cadps2 protein_coding processed_transcript MGP_CASTEiJ_T0076698.1 MGP_CASTEiJ_G0029586.1 mouse_genomes_project 6 20474218 20778014 - MGP_CASTEiJ_P0076698 Cadps2 protein_coding protein_coding MGP_CASTEiJ_T0076699.1 MGP_CASTEiJ_G0029586.1 mouse_genomes_project 6 20474218 21028397 - MGP_CASTEiJ_P0076699 Cadps2 protein_coding protein_coding MGP_CASTEiJ_T0076700.1 MGP_CASTEiJ_G0029586.1 mouse_genomes_project 6 20474223 20529793 - Cadps2 protein_coding processed_transcript MGP_CASTEiJ_T0076701.1 MGP_CASTEiJ_G0029586.1 mouse_genomes_project 6 20621030 21028517 - MGP_CASTEiJ_P0076701 Cadps2 protein_coding protein_coding MGP_CASTEiJ_T0076702.1 MGP_CASTEiJ_G0029586.1 mouse_genomes_project 6 20772219 21028554 - Cadps2 protein_coding retained_intron MGP_CASTEiJ_T0076706.1 MGP_CASTEiJ_G0029586.1 mouse_genomes_project 6 20872206 21028516 - Cadps2 protein_coding retained_intron MGP_CASTEiJ_T0076524.1 MGP_CASTEiJ_G0029558.1 mouse_genomes_project 6 10403249 10465694 - MGP_CASTEiJ_P0076524 protein_coding protein_coding MGP_CASTEiJ_T0076525.1 MGP_CASTEiJ_G0029558.1 mouse_genomes_project 6 10403254 10465612 - MGP_CASTEiJ_P0076525 protein_coding unknown_likely_coding MGP_CASTEiJ_T0078734.1 MGP_CASTEiJ_G0030056.1 mouse_genomes_project 6 86307160 86328231 - MGP_CASTEiJ_P0078734 Dusp11 protein_coding protein_coding MGP_CASTEiJ_T0078735.1 MGP_CASTEiJ_G0030056.1 mouse_genomes_project 6 86312632 86324964 - MGP_CASTEiJ_P0078735 Dusp11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078736.1 MGP_CASTEiJ_G0030056.1 mouse_genomes_project 6 86315480 86316654 - Dusp11 protein_coding retained_intron MGP_CASTEiJ_T0078737.1 MGP_CASTEiJ_G0030056.1 mouse_genomes_project 6 86315485 86319700 - Dusp11 protein_coding processed_transcript MGP_CASTEiJ_T0078738.1 MGP_CASTEiJ_G0030056.1 mouse_genomes_project 6 86315808 86319584 - Dusp11 protein_coding retained_intron MGP_CASTEiJ_T0078739.1 MGP_CASTEiJ_G0030056.1 mouse_genomes_project 6 86320717 86328231 - Dusp11 protein_coding processed_transcript MGP_CASTEiJ_T0078740.1 MGP_CASTEiJ_G0030056.1 mouse_genomes_project 6 86320819 86328171 - Dusp11 protein_coding processed_transcript MGP_CASTEiJ_T0078741.1 MGP_CASTEiJ_G0030056.1 mouse_genomes_project 6 86326879 86328206 - Dusp11 protein_coding retained_intron MGP_CASTEiJ_T0078706.1 MGP_CASTEiJ_G0030047.1 mouse_genomes_project 6 86044417 86213836 - protein_coding processed_transcript MGP_CASTEiJ_T0078709.1 MGP_CASTEiJ_G0030047.1 mouse_genomes_project 6 86138525 86213826 - MGP_CASTEiJ_P0078709 protein_coding protein_coding MGP_CASTEiJ_T0078710.1 MGP_CASTEiJ_G0030047.1 mouse_genomes_project 6 86138598 86140413 - MGP_CASTEiJ_P0078710 protein_coding protein_coding MGP_CASTEiJ_T0008547.1 MGP_CASTEiJ_G0006916.1 mouse_genomes_project 6 146480499 146543593 - 1700060C16Rik lincRNA lincRNA MGP_CASTEiJ_T0001994.1 MGP_CASTEiJ_G0001915.1 mouse_genomes_project 6 88315273 88320141 - TEC TEC MGP_CASTEiJ_T0014968.1 MGP_CASTEiJ_G0013131.1 mouse_genomes_project 6 105177667 105178047 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014712.1 MGP_CASTEiJ_G0012875.1 mouse_genomes_project 6 4001565 4002510 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077536.1 MGP_CASTEiJ_G0029783.1 mouse_genomes_project 6 45879001 45890744 - MGP_CASTEiJ_P0077536 Zfp786 protein_coding protein_coding MGP_CASTEiJ_T0077537.1 MGP_CASTEiJ_G0029783.1 mouse_genomes_project 6 45881393 45890444 - Zfp786 protein_coding processed_transcript MGP_CASTEiJ_T0077538.1 MGP_CASTEiJ_G0029783.1 mouse_genomes_project 6 45887851 45890380 - Zfp786 protein_coding retained_intron MGP_CASTEiJ_T0002106.1 MGP_CASTEiJ_G0002026.1 mouse_genomes_project 6 148128687 148131862 - TEC TEC MGP_CASTEiJ_T0078110.1 MGP_CASTEiJ_G0029925.1 mouse_genomes_project 6 65296009 65297415 + MGP_CASTEiJ_P0078110 4930544G11Rik protein_coding protein_coding MGP_CASTEiJ_T0014998.1 MGP_CASTEiJ_G0013161.1 mouse_genomes_project 6 118029802 118030326 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014962.1 MGP_CASTEiJ_G0013125.1 mouse_genomes_project 6 102265452 102265692 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010488.1 MGP_CASTEiJ_G0008676.1 mouse_genomes_project 6 100043069 100043216 - miRNA miRNA MGP_CASTEiJ_T0010487.1 MGP_CASTEiJ_G0008675.1 mouse_genomes_project 6 95694901 95694969 + Gm23364 miRNA miRNA MGP_CASTEiJ_T0077570.1 MGP_CASTEiJ_G0029791.1 mouse_genomes_project 6 46533779 46551288 - MGP_CASTEiJ_P0077570 Zfp467 protein_coding protein_coding MGP_CASTEiJ_T0077571.1 MGP_CASTEiJ_G0029791.1 mouse_genomes_project 6 46533779 46552508 - MGP_CASTEiJ_P0077571 Zfp467 protein_coding protein_coding MGP_CASTEiJ_T0077572.1 MGP_CASTEiJ_G0029791.1 mouse_genomes_project 6 46533779 46552611 - MGP_CASTEiJ_P0077572 Zfp467 protein_coding protein_coding MGP_CASTEiJ_T0077573.1 MGP_CASTEiJ_G0029791.1 mouse_genomes_project 6 46540257 46552417 - MGP_CASTEiJ_P0077573 Zfp467 protein_coding protein_coding MGP_CASTEiJ_T0077574.1 MGP_CASTEiJ_G0029791.1 mouse_genomes_project 6 46543811 46552125 - MGP_CASTEiJ_P0077574 Zfp467 protein_coding protein_coding MGP_CASTEiJ_T0077575.1 MGP_CASTEiJ_G0029791.1 mouse_genomes_project 6 46543811 46552869 - MGP_CASTEiJ_P0077575 Zfp467 protein_coding protein_coding MGP_CASTEiJ_T0077576.1 MGP_CASTEiJ_G0029791.1 mouse_genomes_project 6 46543811 46552131 - MGP_CASTEiJ_P0077576 Zfp467 protein_coding protein_coding MGP_CASTEiJ_T0077577.1 MGP_CASTEiJ_G0029791.1 mouse_genomes_project 6 46543835 46552486 - MGP_CASTEiJ_P0077577 Zfp467 protein_coding protein_coding MGP_CASTEiJ_T0077578.1 MGP_CASTEiJ_G0029791.1 mouse_genomes_project 6 46544850 46552737 - MGP_CASTEiJ_P0077578 Zfp467 protein_coding protein_coding MGP_CASTEiJ_T0077579.1 MGP_CASTEiJ_G0029791.1 mouse_genomes_project 6 46546608 46552402 - MGP_CASTEiJ_P0077579 Zfp467 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077580.1 MGP_CASTEiJ_G0029791.1 mouse_genomes_project 6 46550014 46552538 - Zfp467 protein_coding retained_intron MGP_CASTEiJ_T0014985.1 MGP_CASTEiJ_G0013148.1 mouse_genomes_project 6 113863868 113864336 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014913.1 MGP_CASTEiJ_G0013076.1 mouse_genomes_project 6 83770655 83771554 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002643.1 MGP_CASTEiJ_G0002533.1 mouse_genomes_project 6 39145760 39146417 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0076880.1 MGP_CASTEiJ_G0029628.1 mouse_genomes_project 6 27065367 27067861 + Smo protein_coding retained_intron MGP_CASTEiJ_T0076881.1 MGP_CASTEiJ_G0029628.1 mouse_genomes_project 6 27065551 27093385 + MGP_CASTEiJ_P0076881 Smo protein_coding protein_coding MGP_CASTEiJ_T0008322.1 MGP_CASTEiJ_G0006751.1 mouse_genomes_project 6 28457180 28457584 - Gm27019 lincRNA lincRNA MGP_CASTEiJ_T0014919.1 MGP_CASTEiJ_G0013082.1 mouse_genomes_project 6 85313293 85313687 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014781.1 MGP_CASTEiJ_G0012944.1 mouse_genomes_project 6 39333193 39333569 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079781.1 MGP_CASTEiJ_G0030252.1 mouse_genomes_project 6 117833612 117882910 + MGP_CASTEiJ_P0079781 Zfand4 protein_coding protein_coding MGP_CASTEiJ_T0078049.1 MGP_CASTEiJ_G0029914.1 mouse_genomes_project 6 59855034 59955970 - MGP_CASTEiJ_P0078049 Snca protein_coding protein_coding MGP_CASTEiJ_T0078050.1 MGP_CASTEiJ_G0029914.1 mouse_genomes_project 6 59855038 59955116 - MGP_CASTEiJ_P0078050 Snca protein_coding protein_coding MGP_CASTEiJ_T0078051.1 MGP_CASTEiJ_G0029914.1 mouse_genomes_project 6 59932056 59953668 - Snca protein_coding processed_transcript MGP_CASTEiJ_T0078052.1 MGP_CASTEiJ_G0029914.1 mouse_genomes_project 6 59939769 59954984 - Snca protein_coding retained_intron MGP_CASTEiJ_T0077223.1 MGP_CASTEiJ_G0029685.1 mouse_genomes_project 6 36274244 36280231 + Fmc1 protein_coding processed_transcript MGP_CASTEiJ_T0077224.1 MGP_CASTEiJ_G0029685.1 mouse_genomes_project 6 36275568 36280232 + MGP_CASTEiJ_P0077224 Fmc1 protein_coding protein_coding MGP_CASTEiJ_T0001852.1 MGP_CASTEiJ_G0001773.1 mouse_genomes_project 6 3698121 3699492 - TEC TEC MGP_CASTEiJ_T0079077.1 MGP_CASTEiJ_G0030125.1 mouse_genomes_project 6 91077906 91090572 + MGP_CASTEiJ_P0079077 Klf15 protein_coding protein_coding MGP_CASTEiJ_T0079078.1 MGP_CASTEiJ_G0030125.1 mouse_genomes_project 6 91078004 91090572 + MGP_CASTEiJ_P0079078 Klf15 protein_coding protein_coding MGP_CASTEiJ_T0079079.1 MGP_CASTEiJ_G0030125.1 mouse_genomes_project 6 91080631 91090569 + MGP_CASTEiJ_P0079079 Klf15 protein_coding protein_coding MGP_CASTEiJ_T0079080.1 MGP_CASTEiJ_G0030125.1 mouse_genomes_project 6 91081729 91090569 + MGP_CASTEiJ_P0079080 Klf15 protein_coding protein_coding MGP_CASTEiJ_T0079081.1 MGP_CASTEiJ_G0030125.1 mouse_genomes_project 6 91082447 91090557 + MGP_CASTEiJ_P0079081 Klf15 protein_coding protein_coding MGP_CASTEiJ_T0079198.1 MGP_CASTEiJ_G0030146.1 mouse_genomes_project 6 93069051 93427604 - MGP_CASTEiJ_P0079198 Prickle2 protein_coding protein_coding MGP_CASTEiJ_T0079199.1 MGP_CASTEiJ_G0030146.1 mouse_genomes_project 6 93069051 93284431 - MGP_CASTEiJ_P0079199 Prickle2 protein_coding protein_coding MGP_CASTEiJ_T0079200.1 MGP_CASTEiJ_G0030146.1 mouse_genomes_project 6 93069053 93247693 - MGP_CASTEiJ_P0079200 Prickle2 protein_coding protein_coding MGP_CASTEiJ_T0079201.1 MGP_CASTEiJ_G0030146.1 mouse_genomes_project 6 93073508 93194360 - MGP_CASTEiJ_P0079201 Prickle2 protein_coding protein_coding MGP_CASTEiJ_T0008384.1 MGP_CASTEiJ_G0006792.1 mouse_genomes_project 6 49683544 49684798 - 0610033M10Rik lincRNA lincRNA MGP_CASTEiJ_T0008385.1 MGP_CASTEiJ_G0006792.1 mouse_genomes_project 6 49683783 49684612 - 0610033M10Rik lincRNA lincRNA MGP_CASTEiJ_T0008468.1 MGP_CASTEiJ_G0006856.1 mouse_genomes_project 6 100942534 100968327 - Gm44442 lincRNA lincRNA MGP_CASTEiJ_T0008469.1 MGP_CASTEiJ_G0006856.1 mouse_genomes_project 6 100942535 100945823 - Gm44442 lincRNA lincRNA MGP_CASTEiJ_T0079165.1 MGP_CASTEiJ_G0030139.1 mouse_genomes_project 6 92555274 92562269 + Ccdc174 protein_coding retained_intron MGP_CASTEiJ_T0079166.1 MGP_CASTEiJ_G0030139.1 mouse_genomes_project 6 92555274 92577799 + MGP_CASTEiJ_P0079166 Ccdc174 protein_coding protein_coding MGP_CASTEiJ_T0079167.1 MGP_CASTEiJ_G0030139.1 mouse_genomes_project 6 92555274 92577799 + MGP_CASTEiJ_P0079167 Ccdc174 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079168.1 MGP_CASTEiJ_G0030139.1 mouse_genomes_project 6 92555293 92557713 + Ccdc174 protein_coding retained_intron MGP_CASTEiJ_T0079169.1 MGP_CASTEiJ_G0030139.1 mouse_genomes_project 6 92555296 92565602 + Ccdc174 protein_coding retained_intron MGP_CASTEiJ_T0079170.1 MGP_CASTEiJ_G0030139.1 mouse_genomes_project 6 92568860 92571765 + Ccdc174 protein_coding retained_intron MGP_CASTEiJ_T0079171.1 MGP_CASTEiJ_G0030139.1 mouse_genomes_project 6 92569318 92571811 + Ccdc174 protein_coding retained_intron MGP_CASTEiJ_T0080400.1 MGP_CASTEiJ_G0030370.1 mouse_genomes_project 6 127297254 127300368 - protein_coding retained_intron MGP_CASTEiJ_T0080401.1 MGP_CASTEiJ_G0030370.1 mouse_genomes_project 6 127297382 127300967 - MGP_CASTEiJ_P0080401 protein_coding unknown_likely_coding MGP_CASTEiJ_T0080402.1 MGP_CASTEiJ_G0030370.1 mouse_genomes_project 6 127298683 127300969 - MGP_CASTEiJ_P0080402 protein_coding protein_coding MGP_CASTEiJ_T0080403.1 MGP_CASTEiJ_G0030370.1 mouse_genomes_project 6 127298711 127300969 - protein_coding processed_transcript MGP_CASTEiJ_T0080404.1 MGP_CASTEiJ_G0030370.1 mouse_genomes_project 6 127299961 127300971 - protein_coding retained_intron MGP_CASTEiJ_T0001846.1 MGP_CASTEiJ_G0001767.1 mouse_genomes_project 6 1698903 1703035 + TEC TEC MGP_CASTEiJ_T0014883.1 MGP_CASTEiJ_G0013046.1 mouse_genomes_project 6 67991005 67992527 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080580.1 MGP_CASTEiJ_G0030409.1 mouse_genomes_project 6 130801440 130820550 - MGP_CASTEiJ_P0080580 Itfg2 protein_coding protein_coding MGP_CASTEiJ_T0080581.1 MGP_CASTEiJ_G0030409.1 mouse_genomes_project 6 130801494 130802368 - MGP_CASTEiJ_P0080581 Itfg2 protein_coding protein_coding MGP_CASTEiJ_T0080582.1 MGP_CASTEiJ_G0030409.1 mouse_genomes_project 6 130801529 130820537 - MGP_CASTEiJ_P0080582 Itfg2 protein_coding protein_coding MGP_CASTEiJ_T0080583.1 MGP_CASTEiJ_G0030409.1 mouse_genomes_project 6 130802199 130820488 - MGP_CASTEiJ_P0080583 Itfg2 protein_coding protein_coding MGP_CASTEiJ_T0080584.1 MGP_CASTEiJ_G0030409.1 mouse_genomes_project 6 130802245 130802673 - Itfg2 protein_coding retained_intron MGP_CASTEiJ_T0080585.1 MGP_CASTEiJ_G0030409.1 mouse_genomes_project 6 130803575 130808066 - Itfg2 protein_coding retained_intron MGP_CASTEiJ_T0080586.1 MGP_CASTEiJ_G0030409.1 mouse_genomes_project 6 130804995 130820531 - MGP_CASTEiJ_P0080586 Itfg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080587.1 MGP_CASTEiJ_G0030409.1 mouse_genomes_project 6 130805628 130820532 - MGP_CASTEiJ_P0080587 Itfg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080588.1 MGP_CASTEiJ_G0030409.1 mouse_genomes_project 6 130809324 130820549 - Itfg2 protein_coding retained_intron MGP_CASTEiJ_T0080589.1 MGP_CASTEiJ_G0030409.1 mouse_genomes_project 6 130816350 130820537 - Itfg2 protein_coding retained_intron MGP_CASTEiJ_T0077879.1 MGP_CASTEiJ_G0029861.1 mouse_genomes_project 6 53170241 53193143 + MGP_CASTEiJ_P0077879 Mturn protein_coding protein_coding MGP_CASTEiJ_T0077880.1 MGP_CASTEiJ_G0029861.1 mouse_genomes_project 6 53170371 53190434 + MGP_CASTEiJ_P0077880 Mturn protein_coding protein_coding MGP_CASTEiJ_T0077881.1 MGP_CASTEiJ_G0029861.1 mouse_genomes_project 6 53170419 53178198 + Mturn protein_coding retained_intron MGP_CASTEiJ_T0011322.1 MGP_CASTEiJ_G0009510.1 mouse_genomes_project 6 50635570 50635741 + Gm27866 misc_RNA misc_RNA MGP_CASTEiJ_T0015067.1 MGP_CASTEiJ_G0013230.1 mouse_genomes_project 6 135268587 135269013 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002013.1 MGP_CASTEiJ_G0001934.1 mouse_genomes_project 6 92342120 92343146 - TEC TEC MGP_CASTEiJ_T0076768.1 MGP_CASTEiJ_G0029608.1 mouse_genomes_project 6 25688013 25694808 - MGP_CASTEiJ_P0076768 Pax4 protein_coding protein_coding MGP_CASTEiJ_T0076769.1 MGP_CASTEiJ_G0029608.1 mouse_genomes_project 6 25688013 25694910 - MGP_CASTEiJ_P0076769 Pax4 protein_coding protein_coding MGP_CASTEiJ_T0076770.1 MGP_CASTEiJ_G0029608.1 mouse_genomes_project 6 25688018 25694808 - MGP_CASTEiJ_P0076770 Pax4 protein_coding protein_coding MGP_CASTEiJ_T0076771.1 MGP_CASTEiJ_G0029608.1 mouse_genomes_project 6 25688054 25692741 - MGP_CASTEiJ_P0076771 Pax4 protein_coding protein_coding MGP_CASTEiJ_T0076772.1 MGP_CASTEiJ_G0029608.1 mouse_genomes_project 6 25689367 25691938 - Pax4 protein_coding retained_intron MGP_CASTEiJ_T0076773.1 MGP_CASTEiJ_G0029608.1 mouse_genomes_project 6 25690291 25692741 - Pax4 protein_coding retained_intron MGP_CASTEiJ_T0014835.1 MGP_CASTEiJ_G0012998.1 mouse_genomes_project 6 60014329 60014854 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078293.1 MGP_CASTEiJ_G0029966.1 mouse_genomes_project 6 72086094 72093050 - MGP_CASTEiJ_P0078293 Mat2a protein_coding protein_coding MGP_CASTEiJ_T0078294.1 MGP_CASTEiJ_G0029966.1 mouse_genomes_project 6 72086094 72093048 - MGP_CASTEiJ_P0078294 Mat2a protein_coding protein_coding MGP_CASTEiJ_T0078295.1 MGP_CASTEiJ_G0029966.1 mouse_genomes_project 6 72088038 72093048 - MGP_CASTEiJ_P0078295 Mat2a protein_coding protein_coding MGP_CASTEiJ_T0078296.1 MGP_CASTEiJ_G0029966.1 mouse_genomes_project 6 72089304 72092880 - MGP_CASTEiJ_P0078296 Mat2a protein_coding protein_coding MGP_CASTEiJ_T0078297.1 MGP_CASTEiJ_G0029966.1 mouse_genomes_project 6 72089910 72093032 - Mat2a protein_coding retained_intron MGP_CASTEiJ_T0078298.1 MGP_CASTEiJ_G0029966.1 mouse_genomes_project 6 72090241 72093035 - Mat2a protein_coding retained_intron MGP_CASTEiJ_T0078299.1 MGP_CASTEiJ_G0029966.1 mouse_genomes_project 6 72090886 72093040 - Mat2a protein_coding processed_transcript MGP_CASTEiJ_T0078300.1 MGP_CASTEiJ_G0029966.1 mouse_genomes_project 6 72092293 72093048 - Mat2a protein_coding retained_intron MGP_CASTEiJ_T0079008.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89445476 89455593 + MGP_CASTEiJ_P0079008 Tpra1 protein_coding protein_coding MGP_CASTEiJ_T0079009.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89445524 89452780 + Tpra1 protein_coding processed_transcript MGP_CASTEiJ_T0079010.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89445542 89449799 + Tpra1 protein_coding processed_transcript MGP_CASTEiJ_T0079011.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89445542 89449328 + Tpra1 protein_coding retained_intron MGP_CASTEiJ_T0079012.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89445558 89455593 + MGP_CASTEiJ_P0079012 Tpra1 protein_coding protein_coding MGP_CASTEiJ_T0079013.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89445562 89453727 + Tpra1 protein_coding processed_transcript MGP_CASTEiJ_T0079014.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89445567 89453591 + MGP_CASTEiJ_P0079014 Tpra1 protein_coding protein_coding MGP_CASTEiJ_T0079015.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89445577 89453575 + MGP_CASTEiJ_P0079015 Tpra1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079016.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89445678 89455593 + MGP_CASTEiJ_P0079016 Tpra1 protein_coding protein_coding MGP_CASTEiJ_T0079017.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89445731 89455602 + MGP_CASTEiJ_P0079017 Tpra1 protein_coding protein_coding MGP_CASTEiJ_T0079018.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89448864 89452667 + Tpra1 protein_coding processed_transcript MGP_CASTEiJ_T0079019.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89449176 89455593 + MGP_CASTEiJ_P0079019 Tpra1 protein_coding protein_coding MGP_CASTEiJ_T0079020.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89449185 89450995 + Tpra1 protein_coding processed_transcript MGP_CASTEiJ_T0079021.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89449187 89455109 + MGP_CASTEiJ_P0079021 Tpra1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079022.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89449205 89454184 + MGP_CASTEiJ_P0079022 Tpra1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079023.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89449271 89454012 + MGP_CASTEiJ_P0079023 Tpra1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079024.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89451209 89455600 + MGP_CASTEiJ_P0079024 Tpra1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079025.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89451223 89454463 + MGP_CASTEiJ_P0079025 Tpra1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079026.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89451422 89452893 + Tpra1 protein_coding processed_transcript MGP_CASTEiJ_T0079027.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89451422 89452909 + Tpra1 protein_coding retained_intron MGP_CASTEiJ_T0079028.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89453521 89454313 + Tpra1 protein_coding retained_intron MGP_CASTEiJ_T0079029.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89453586 89453862 + Tpra1 protein_coding retained_intron MGP_CASTEiJ_T0079030.1 MGP_CASTEiJ_G0030105.1 mouse_genomes_project 6 89453962 89455117 + Tpra1 protein_coding retained_intron MGP_CASTEiJ_T0077783.1 MGP_CASTEiJ_G0029839.1 mouse_genomes_project 6 50540856 50544206 + MGP_CASTEiJ_P0077783 5730596B20Rik protein_coding protein_coding MGP_CASTEiJ_T0014732.1 MGP_CASTEiJ_G0012895.1 mouse_genomes_project 6 11204986 11205557 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014729.1 MGP_CASTEiJ_G0012892.1 mouse_genomes_project 6 10246984 10247480 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078340.1 MGP_CASTEiJ_G0029974.1 mouse_genomes_project 6 72655835 72656587 - MGP_CASTEiJ_P0078340 protein_coding protein_coding MGP_CASTEiJ_T0079809.1 MGP_CASTEiJ_G0030257.1 mouse_genomes_project 6 118114482 118116732 + MGP_CASTEiJ_P0079809 protein_coding protein_coding MGP_CASTEiJ_T0004833.1 MGP_CASTEiJ_G0004155.1 mouse_genomes_project 6 57546484 57588983 + BB365896 antisense antisense MGP_CASTEiJ_T0008419.1 MGP_CASTEiJ_G0006821.1 mouse_genomes_project 6 73149422 73173091 - lincRNA lincRNA MGP_CASTEiJ_T0102430.1 MGP_CASTEiJ_G0039155.1 mouse_genomes_project 6 133569682 133572230 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0080867.1 MGP_CASTEiJ_G0030501.1 mouse_genomes_project 6 139402359 139414006 - MGP_CASTEiJ_P0080867 Art4 protein_coding protein_coding MGP_CASTEiJ_T0014864.1 MGP_CASTEiJ_G0013027.1 mouse_genomes_project 6 65912482 65914402 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076454.1 MGP_CASTEiJ_G0029545.1 mouse_genomes_project 6 5060151 5063351 - MGP_CASTEiJ_P0076454 Rpa3 protein_coding protein_coding MGP_CASTEiJ_T0076455.1 MGP_CASTEiJ_G0029545.1 mouse_genomes_project 6 5061430 5063318 - Rpa3 protein_coding retained_intron MGP_CASTEiJ_T0002049.1 MGP_CASTEiJ_G0001970.1 mouse_genomes_project 6 114526127 114528296 - TEC TEC MGP_CASTEiJ_T0000156.1 MGP_CASTEiJ_G0000119.1 mouse_genomes_project 6 67455414 67455901 - MGP_CASTEiJ_P0000156 Igkv9-123 IG_V_gene IG_V_gene MGP_CASTEiJ_T0099055.1 MGP_CASTEiJ_G0035969.1 mouse_genomes_project 6 92175057 92185078 + Gm45216 sense_overlapping sense_overlapping MGP_CASTEiJ_T0078495.1 MGP_CASTEiJ_G0030011.1 mouse_genomes_project 6 83265427 83279482 + MGP_CASTEiJ_P0078495 Rtkn protein_coding protein_coding MGP_CASTEiJ_T0078496.1 MGP_CASTEiJ_G0030011.1 mouse_genomes_project 6 83265776 83282500 + MGP_CASTEiJ_P0078496 Rtkn protein_coding protein_coding MGP_CASTEiJ_T0078497.1 MGP_CASTEiJ_G0030011.1 mouse_genomes_project 6 83267101 83282500 + MGP_CASTEiJ_P0078497 Rtkn protein_coding protein_coding MGP_CASTEiJ_T0078498.1 MGP_CASTEiJ_G0030011.1 mouse_genomes_project 6 83267122 83282500 + MGP_CASTEiJ_P0078498 Rtkn protein_coding protein_coding MGP_CASTEiJ_T0078499.1 MGP_CASTEiJ_G0030011.1 mouse_genomes_project 6 83272313 83278081 + MGP_CASTEiJ_P0078499 Rtkn protein_coding protein_coding MGP_CASTEiJ_T0078500.1 MGP_CASTEiJ_G0030011.1 mouse_genomes_project 6 83272363 83282505 + MGP_CASTEiJ_P0078500 Rtkn protein_coding unknown_likely_coding MGP_CASTEiJ_T0078501.1 MGP_CASTEiJ_G0030011.1 mouse_genomes_project 6 83272485 83277590 + MGP_CASTEiJ_P0078501 Rtkn protein_coding protein_coding MGP_CASTEiJ_T0078502.1 MGP_CASTEiJ_G0030011.1 mouse_genomes_project 6 83277749 83280162 + Rtkn protein_coding retained_intron MGP_CASTEiJ_T0078504.1 MGP_CASTEiJ_G0030011.1 mouse_genomes_project 6 83280725 83282125 + Rtkn protein_coding retained_intron MGP_CASTEiJ_T0014952.1 MGP_CASTEiJ_G0013115.1 mouse_genomes_project 6 96917759 96918126 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077865.1 MGP_CASTEiJ_G0029858.1 mouse_genomes_project 6 52975038 52983259 - MGP_CASTEiJ_P0077865 Scrn1 protein_coding protein_coding MGP_CASTEiJ_T0077866.1 MGP_CASTEiJ_G0029858.1 mouse_genomes_project 6 52979756 53047747 - MGP_CASTEiJ_P0077866 Scrn1 protein_coding protein_coding MGP_CASTEiJ_T0077867.1 MGP_CASTEiJ_G0029858.1 mouse_genomes_project 6 52980131 52995942 - MGP_CASTEiJ_P0077867 Scrn1 protein_coding protein_coding MGP_CASTEiJ_T0077868.1 MGP_CASTEiJ_G0029858.1 mouse_genomes_project 6 52983005 52988854 - Scrn1 protein_coding retained_intron MGP_CASTEiJ_T0077869.1 MGP_CASTEiJ_G0029858.1 mouse_genomes_project 6 53012856 53034049 - MGP_CASTEiJ_P0077869 Scrn1 protein_coding protein_coding MGP_CASTEiJ_T0077870.1 MGP_CASTEiJ_G0029858.1 mouse_genomes_project 6 53031361 53034040 - Scrn1 protein_coding processed_transcript MGP_CASTEiJ_T0101647.1 MGP_CASTEiJ_G0038491.1 mouse_genomes_project 6 124836321 124839417 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101648.1 MGP_CASTEiJ_G0038491.1 mouse_genomes_project 6 124836736 124837006 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0001851.1 MGP_CASTEiJ_G0001772.1 mouse_genomes_project 6 3686441 3688467 - TEC TEC MGP_CASTEiJ_T0004908.1 MGP_CASTEiJ_G0004201.1 mouse_genomes_project 6 100726369 100733076 + Gm26748 antisense antisense MGP_CASTEiJ_T0001918.1 MGP_CASTEiJ_G0001839.1 mouse_genomes_project 6 50950944 50953629 + TEC TEC MGP_CASTEiJ_T0079591.1 MGP_CASTEiJ_G0030220.1 mouse_genomes_project 6 115157777 115165802 + MGP_CASTEiJ_P0079591 Vhl protein_coding protein_coding MGP_CASTEiJ_T0079592.1 MGP_CASTEiJ_G0030220.1 mouse_genomes_project 6 115158538 115163936 + Vhl protein_coding processed_transcript MGP_CASTEiJ_T0079593.1 MGP_CASTEiJ_G0030220.1 mouse_genomes_project 6 115158746 115163732 + Vhl protein_coding processed_transcript MGP_CASTEiJ_T0079594.1 MGP_CASTEiJ_G0030220.1 mouse_genomes_project 6 115163681 115165796 + MGP_CASTEiJ_P0079594 Vhl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077363.1 MGP_CASTEiJ_G0029722.1 mouse_genomes_project 6 39191820 39195975 + MGP_CASTEiJ_P0077363 Try4 protein_coding protein_coding MGP_CASTEiJ_T0076721.1 MGP_CASTEiJ_G0029595.1 mouse_genomes_project 6 21788540 21843271 - MGP_CASTEiJ_P0076721 Wasl protein_coding protein_coding MGP_CASTEiJ_T0076722.1 MGP_CASTEiJ_G0029595.1 mouse_genomes_project 6 21802670 21804095 - Wasl protein_coding retained_intron MGP_CASTEiJ_T0076723.1 MGP_CASTEiJ_G0029595.1 mouse_genomes_project 6 21809414 21843250 - MGP_CASTEiJ_P0076723 Wasl protein_coding protein_coding MGP_CASTEiJ_T0076724.1 MGP_CASTEiJ_G0029595.1 mouse_genomes_project 6 21815638 21843200 - Wasl protein_coding processed_transcript MGP_CASTEiJ_T0010508.1 MGP_CASTEiJ_G0008696.1 mouse_genomes_project 6 127332208 127332295 + Mir3098 miRNA miRNA MGP_CASTEiJ_T0014875.1 MGP_CASTEiJ_G0013038.1 mouse_genomes_project 6 66820147 66820481 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080698.1 MGP_CASTEiJ_G0030445.1 mouse_genomes_project 6 133765011 133788424 - MGP_CASTEiJ_P0080698 Styk1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0080699.1 MGP_CASTEiJ_G0030445.1 mouse_genomes_project 6 133765763 133782092 - MGP_CASTEiJ_P0080699 Styk1 protein_coding protein_coding MGP_CASTEiJ_T0080700.1 MGP_CASTEiJ_G0030445.1 mouse_genomes_project 6 133776901 133822260 - Styk1 protein_coding processed_transcript MGP_CASTEiJ_T0080701.1 MGP_CASTEiJ_G0030445.1 mouse_genomes_project 6 133806119 133822257 - Styk1 protein_coding processed_transcript MGP_CASTEiJ_T0080702.1 MGP_CASTEiJ_G0030445.1 mouse_genomes_project 6 133820654 133822260 - Styk1 protein_coding retained_intron MGP_CASTEiJ_T0014889.1 MGP_CASTEiJ_G0013052.1 mouse_genomes_project 6 71533687 71534650 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077390.1 MGP_CASTEiJ_G0029736.1 mouse_genomes_project 6 39709000 39713534 + MGP_CASTEiJ_P0077390 Pip protein_coding protein_coding MGP_CASTEiJ_T0077391.1 MGP_CASTEiJ_G0029736.1 mouse_genomes_project 6 39709033 39713426 + MGP_CASTEiJ_P0077391 Pip protein_coding protein_coding MGP_CASTEiJ_T0077392.1 MGP_CASTEiJ_G0029736.1 mouse_genomes_project 6 39709050 39713058 + MGP_CASTEiJ_P0077392 Pip protein_coding protein_coding MGP_CASTEiJ_T0002102.1 MGP_CASTEiJ_G0002022.1 mouse_genomes_project 6 143387027 143389312 - TEC TEC MGP_CASTEiJ_T0079675.1 MGP_CASTEiJ_G0030232.1 mouse_genomes_project 6 116616059 116767674 + Syn2 protein_coding retained_intron MGP_CASTEiJ_T0079676.1 MGP_CASTEiJ_G0030232.1 mouse_genomes_project 6 116616059 116769142 + MGP_CASTEiJ_P0079676 Syn2 protein_coding protein_coding MGP_CASTEiJ_T0079677.1 MGP_CASTEiJ_G0030232.1 mouse_genomes_project 6 116616074 116774550 + MGP_CASTEiJ_P0079677 Syn2 protein_coding protein_coding MGP_CASTEiJ_T0079678.1 MGP_CASTEiJ_G0030232.1 mouse_genomes_project 6 116616107 116769142 + MGP_CASTEiJ_P0079678 Syn2 protein_coding protein_coding MGP_CASTEiJ_T0079679.1 MGP_CASTEiJ_G0030232.1 mouse_genomes_project 6 116703801 116735545 + Syn2 protein_coding processed_transcript MGP_CASTEiJ_T0079681.1 MGP_CASTEiJ_G0030232.1 mouse_genomes_project 6 116730322 116769142 + Syn2 protein_coding processed_transcript MGP_CASTEiJ_T0079684.1 MGP_CASTEiJ_G0030232.1 mouse_genomes_project 6 116744952 116771279 + Syn2 protein_coding retained_intron MGP_CASTEiJ_T0002493.1 MGP_CASTEiJ_G0002402.1 mouse_genomes_project 6 39376617 39376667 + MGP_CASTEiJ_P0002493 Trbj2-1 TR_J_gene TR_J_gene MGP_CASTEiJ_T0078187.1 MGP_CASTEiJ_G0029947.1 mouse_genomes_project 6 70951975 71009797 - MGP_CASTEiJ_P0078187 Rmnd5a protein_coding protein_coding MGP_CASTEiJ_T0078188.1 MGP_CASTEiJ_G0029947.1 mouse_genomes_project 6 70953802 70959571 - Rmnd5a protein_coding processed_transcript MGP_CASTEiJ_T0078189.1 MGP_CASTEiJ_G0029947.1 mouse_genomes_project 6 70954669 70959476 - Rmnd5a protein_coding processed_transcript MGP_CASTEiJ_T0078190.1 MGP_CASTEiJ_G0029947.1 mouse_genomes_project 6 70957772 70960494 - Rmnd5a protein_coding retained_intron MGP_CASTEiJ_T0077441.1 MGP_CASTEiJ_G0029749.1 mouse_genomes_project 6 40220787 40235560 - MGP_CASTEiJ_P0077441 Epha1 protein_coding protein_coding MGP_CASTEiJ_T0077442.1 MGP_CASTEiJ_G0029749.1 mouse_genomes_project 6 40221016 40235560 - MGP_CASTEiJ_P0077442 Epha1 protein_coding protein_coding MGP_CASTEiJ_T0077443.1 MGP_CASTEiJ_G0029749.1 mouse_genomes_project 6 40229308 40235527 - Epha1 protein_coding retained_intron MGP_CASTEiJ_T0004974.1 MGP_CASTEiJ_G0004254.1 mouse_genomes_project 6 141244106 141264676 + B230110G15Rik antisense antisense MGP_CASTEiJ_T0014996.1 MGP_CASTEiJ_G0013159.1 mouse_genomes_project 6 116583436 116583767 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004868.1 MGP_CASTEiJ_G0004178.1 mouse_genomes_project 6 86328186 86375406 + Gm19265 antisense antisense MGP_CASTEiJ_T0102409.1 MGP_CASTEiJ_G0039134.1 mouse_genomes_project 6 86086672 86132610 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008345.1 MGP_CASTEiJ_G0006767.1 mouse_genomes_project 6 31672170 31679385 + Gm13855 lincRNA lincRNA MGP_CASTEiJ_T0080501.1 MGP_CASTEiJ_G0030392.1 mouse_genomes_project 6 129167620 129198000 + D6Wsu163e protein_coding retained_intron MGP_CASTEiJ_T0080502.1 MGP_CASTEiJ_G0030392.1 mouse_genomes_project 6 129167624 129205445 + MGP_CASTEiJ_P0080502 D6Wsu163e protein_coding protein_coding MGP_CASTEiJ_T0080503.1 MGP_CASTEiJ_G0030392.1 mouse_genomes_project 6 129167629 129170293 + D6Wsu163e protein_coding retained_intron MGP_CASTEiJ_T0080504.1 MGP_CASTEiJ_G0030392.1 mouse_genomes_project 6 129167633 129175078 + D6Wsu163e protein_coding retained_intron MGP_CASTEiJ_T0080505.1 MGP_CASTEiJ_G0030392.1 mouse_genomes_project 6 129167687 129172397 + MGP_CASTEiJ_P0080505 D6Wsu163e protein_coding protein_coding MGP_CASTEiJ_T0080506.1 MGP_CASTEiJ_G0030392.1 mouse_genomes_project 6 129177870 129182685 + D6Wsu163e protein_coding retained_intron MGP_CASTEiJ_T0080507.1 MGP_CASTEiJ_G0030392.1 mouse_genomes_project 6 129202768 129203963 + D6Wsu163e protein_coding retained_intron MGP_CASTEiJ_T0017479.1 MGP_CASTEiJ_G0014940.1 mouse_genomes_project 6 5305299 5332034 - A430035B10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017480.1 MGP_CASTEiJ_G0014940.1 mouse_genomes_project 6 5306456 5319578 - A430035B10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017481.1 MGP_CASTEiJ_G0014940.1 mouse_genomes_project 6 5312266 5330677 - A430035B10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017482.1 MGP_CASTEiJ_G0014940.1 mouse_genomes_project 6 5314027 5330620 - A430035B10Rik processed_transcript retained_intron MGP_CASTEiJ_T0017483.1 MGP_CASTEiJ_G0014940.1 mouse_genomes_project 6 5328656 5330737 - A430035B10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0099986.1 MGP_CASTEiJ_G0036899.1 mouse_genomes_project 6 132550524 132550590 + Gm22555 snRNA snRNA MGP_CASTEiJ_T0001988.1 MGP_CASTEiJ_G0001909.1 mouse_genomes_project 6 87708652 87712015 - TEC TEC MGP_CASTEiJ_T0014846.1 MGP_CASTEiJ_G0013009.1 mouse_genomes_project 6 64283627 64284515 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010450.1 MGP_CASTEiJ_G0008638.1 mouse_genomes_project 6 19939624 19939715 - Gm23961 miRNA miRNA MGP_CASTEiJ_T0077739.1 MGP_CASTEiJ_G0029828.1 mouse_genomes_project 6 48783161 48807134 - MGP_CASTEiJ_P0077739 4921507P07Rik protein_coding protein_coding MGP_CASTEiJ_T0014727.1 MGP_CASTEiJ_G0012890.1 mouse_genomes_project 6 9636471 9637457 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078007.1 MGP_CASTEiJ_G0029898.1 mouse_genomes_project 6 56457939 56459035 - MGP_CASTEiJ_P0078007 Vmn1r22 protein_coding protein_coding MGP_CASTEiJ_T0000018.1 MGP_CASTEiJ_G0000013.1 mouse_genomes_project 6 70238329 70238861 + MGP_CASTEiJ_P0000018 Igkc IG_C_gene IG_C_gene MGP_CASTEiJ_T0014711.1 MGP_CASTEiJ_G0012874.1 mouse_genomes_project 6 3999239 4001467 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015045.1 MGP_CASTEiJ_G0013208.1 mouse_genomes_project 6 130062777 130063003 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079666.1 MGP_CASTEiJ_G0030231.1 mouse_genomes_project 6 116474720 116509816 - MGP_CASTEiJ_P0079666 Tamm41 protein_coding protein_coding MGP_CASTEiJ_T0079667.1 MGP_CASTEiJ_G0030231.1 mouse_genomes_project 6 116474721 116509770 - MGP_CASTEiJ_P0079667 Tamm41 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079668.1 MGP_CASTEiJ_G0030231.1 mouse_genomes_project 6 116474727 116482855 - Tamm41 protein_coding retained_intron MGP_CASTEiJ_T0079669.1 MGP_CASTEiJ_G0030231.1 mouse_genomes_project 6 116478503 116486712 - Tamm41 protein_coding retained_intron MGP_CASTEiJ_T0079670.1 MGP_CASTEiJ_G0030231.1 mouse_genomes_project 6 116481161 116503848 - MGP_CASTEiJ_P0079670 Tamm41 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079671.1 MGP_CASTEiJ_G0030231.1 mouse_genomes_project 6 116482534 116509795 - MGP_CASTEiJ_P0079671 Tamm41 protein_coding protein_coding MGP_CASTEiJ_T0079672.1 MGP_CASTEiJ_G0030231.1 mouse_genomes_project 6 116486539 116509765 - MGP_CASTEiJ_P0079672 Tamm41 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079673.1 MGP_CASTEiJ_G0030231.1 mouse_genomes_project 6 116495002 116509816 - Tamm41 protein_coding retained_intron MGP_CASTEiJ_T0079674.1 MGP_CASTEiJ_G0030231.1 mouse_genomes_project 6 116502861 116503849 - Tamm41 protein_coding processed_transcript MGP_CASTEiJ_T0079965.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121674143 121677436 - Wnk1 protein_coding retained_intron MGP_CASTEiJ_T0079966.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121674143 121796508 - MGP_CASTEiJ_P0079966 Wnk1 protein_coding protein_coding MGP_CASTEiJ_T0079967.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121674145 121796491 - MGP_CASTEiJ_P0079967 Wnk1 protein_coding protein_coding MGP_CASTEiJ_T0079968.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121674145 121796491 - MGP_CASTEiJ_P0079968 Wnk1 protein_coding protein_coding MGP_CASTEiJ_T0079969.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121674795 121795495 - MGP_CASTEiJ_P0079969 Wnk1 protein_coding protein_coding MGP_CASTEiJ_T0079970.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121674795 121795495 - MGP_CASTEiJ_P0079970 Wnk1 protein_coding protein_coding MGP_CASTEiJ_T0079971.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121676753 121686595 - MGP_CASTEiJ_P0079971 Wnk1 protein_coding protein_coding MGP_CASTEiJ_T0079972.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121677299 121687792 - MGP_CASTEiJ_P0079972 Wnk1 protein_coding protein_coding MGP_CASTEiJ_T0079973.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121680007 121684473 - MGP_CASTEiJ_P0079973 Wnk1 protein_coding protein_coding MGP_CASTEiJ_T0079974.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121680007 121684474 - MGP_CASTEiJ_P0079974 Wnk1 protein_coding protein_coding MGP_CASTEiJ_T0079975.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121680921 121683981 - Wnk1 protein_coding retained_intron MGP_CASTEiJ_T0079976.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121687602 121698598 - MGP_CASTEiJ_P0079976 Wnk1 protein_coding protein_coding MGP_CASTEiJ_T0079977.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121687757 121698277 - MGP_CASTEiJ_P0079977 Wnk1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079978.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121687877 121690256 - Wnk1 protein_coding retained_intron MGP_CASTEiJ_T0079979.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121694498 121700325 - Wnk1 protein_coding retained_intron MGP_CASTEiJ_T0079980.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121700493 121702169 - Wnk1 protein_coding retained_intron MGP_CASTEiJ_T0079981.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121701821 121721047 - MGP_CASTEiJ_P0079981 Wnk1 protein_coding protein_coding MGP_CASTEiJ_T0079982.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121701828 121706336 - MGP_CASTEiJ_P0079982 Wnk1 protein_coding protein_coding MGP_CASTEiJ_T0079983.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121703039 121744275 - MGP_CASTEiJ_P0079983 Wnk1 protein_coding protein_coding MGP_CASTEiJ_T0079984.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121703820 121796443 - Wnk1 protein_coding retained_intron MGP_CASTEiJ_T0079985.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121703820 121744234 - Wnk1 protein_coding retained_intron MGP_CASTEiJ_T0079986.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121706261 121714155 - MGP_CASTEiJ_P0079986 Wnk1 protein_coding protein_coding MGP_CASTEiJ_T0079987.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121713532 121714958 - MGP_CASTEiJ_P0079987 Wnk1 protein_coding protein_coding MGP_CASTEiJ_T0079988.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121721938 121746633 - Wnk1 protein_coding processed_transcript MGP_CASTEiJ_T0079989.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121721949 121735619 - Wnk1 protein_coding processed_transcript MGP_CASTEiJ_T0079990.1 MGP_CASTEiJ_G0030285.1 mouse_genomes_project 6 121723131 121726508 - Wnk1 protein_coding retained_intron MGP_CASTEiJ_T0077360.1 MGP_CASTEiJ_G0029719.1 mouse_genomes_project 6 38858190 38862583 + MGP_CASTEiJ_P0077360 protein_coding protein_coding MGP_CASTEiJ_T0010464.1 MGP_CASTEiJ_G0008652.1 mouse_genomes_project 6 36242846 36242915 + Mir7670 miRNA miRNA MGP_CASTEiJ_T0001955.1 MGP_CASTEiJ_G0001876.1 mouse_genomes_project 6 77376548 77379626 - TEC TEC MGP_CASTEiJ_T0015096.1 MGP_CASTEiJ_G0013259.1 mouse_genomes_project 6 149685959 149686307 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001891.1 MGP_CASTEiJ_G0001812.1 mouse_genomes_project 6 39538856 39542403 - TEC TEC MGP_CASTEiJ_T0077470.1 MGP_CASTEiJ_G0029764.1 mouse_genomes_project 6 40719930 40724005 + MGP_CASTEiJ_P0077470 Olfr449 protein_coding protein_coding MGP_CASTEiJ_T0077471.1 MGP_CASTEiJ_G0029764.1 mouse_genomes_project 6 40719930 40723819 + MGP_CASTEiJ_P0077471 Olfr449 protein_coding protein_coding MGP_CASTEiJ_T0077472.1 MGP_CASTEiJ_G0029764.1 mouse_genomes_project 6 40719978 40723485 + MGP_CASTEiJ_P0077472 Olfr449 protein_coding protein_coding MGP_CASTEiJ_T0077473.1 MGP_CASTEiJ_G0029764.1 mouse_genomes_project 6 40723396 40724433 + MGP_CASTEiJ_P0077473 Olfr449 protein_coding protein_coding MGP_CASTEiJ_T0008381.1 MGP_CASTEiJ_G0006789.1 mouse_genomes_project 6 49553951 49558278 - Gm44447 lincRNA lincRNA MGP_CASTEiJ_T0098769.1 MGP_CASTEiJ_G0035700.1 mouse_genomes_project 6 51428113 51428252 - Gm26215 scaRNA scaRNA MGP_CASTEiJ_T0080217.1 MGP_CASTEiJ_G0030340.1 mouse_genomes_project 6 126680919 126685092 - protein_coding retained_intron MGP_CASTEiJ_T0080218.1 MGP_CASTEiJ_G0030340.1 mouse_genomes_project 6 126685035 126694242 - MGP_CASTEiJ_P0080218 protein_coding protein_coding MGP_CASTEiJ_T0080219.1 MGP_CASTEiJ_G0030340.1 mouse_genomes_project 6 126685652 126694248 - MGP_CASTEiJ_P0080219 protein_coding protein_coding MGP_CASTEiJ_T0011292.1 MGP_CASTEiJ_G0009480.1 mouse_genomes_project 6 7678615 7678707 + Gm27894 misc_RNA misc_RNA MGP_CASTEiJ_T0080130.1 MGP_CASTEiJ_G0030314.1 mouse_genomes_project 6 124397261 124406866 + MGP_CASTEiJ_P0080130 Mfap5 protein_coding protein_coding MGP_CASTEiJ_T0080131.1 MGP_CASTEiJ_G0030314.1 mouse_genomes_project 6 124405073 124422728 + MGP_CASTEiJ_P0080131 Mfap5 protein_coding protein_coding MGP_CASTEiJ_T0080132.1 MGP_CASTEiJ_G0030314.1 mouse_genomes_project 6 124405073 124422204 + MGP_CASTEiJ_P0080132 Mfap5 protein_coding protein_coding MGP_CASTEiJ_T0080133.1 MGP_CASTEiJ_G0030314.1 mouse_genomes_project 6 124405149 124422070 + MGP_CASTEiJ_P0080133 Mfap5 protein_coding protein_coding MGP_CASTEiJ_T0080134.1 MGP_CASTEiJ_G0030314.1 mouse_genomes_project 6 124405166 124421776 + MGP_CASTEiJ_P0080134 Mfap5 protein_coding protein_coding MGP_CASTEiJ_T0080135.1 MGP_CASTEiJ_G0030314.1 mouse_genomes_project 6 124405166 124422070 + MGP_CASTEiJ_P0080135 Mfap5 protein_coding protein_coding MGP_CASTEiJ_T0080136.1 MGP_CASTEiJ_G0030314.1 mouse_genomes_project 6 124415885 124422073 + Mfap5 protein_coding retained_intron MGP_CASTEiJ_T0079815.1 MGP_CASTEiJ_G0030261.1 mouse_genomes_project 6 118215425 118257795 - MGP_CASTEiJ_P0079815 Rassf4 protein_coding protein_coding MGP_CASTEiJ_T0079816.1 MGP_CASTEiJ_G0030261.1 mouse_genomes_project 6 118221653 118257652 - MGP_CASTEiJ_P0079816 Rassf4 protein_coding protein_coding MGP_CASTEiJ_T0079817.1 MGP_CASTEiJ_G0030261.1 mouse_genomes_project 6 118221890 118223409 - Rassf4 protein_coding processed_transcript MGP_CASTEiJ_T0079818.1 MGP_CASTEiJ_G0030261.1 mouse_genomes_project 6 118225250 118257632 - Rassf4 protein_coding retained_intron MGP_CASTEiJ_T0079819.1 MGP_CASTEiJ_G0030261.1 mouse_genomes_project 6 118227566 118230268 - Rassf4 protein_coding retained_intron MGP_CASTEiJ_T0079820.1 MGP_CASTEiJ_G0030261.1 mouse_genomes_project 6 118228237 118257614 - MGP_CASTEiJ_P0079820 Rassf4 protein_coding protein_coding MGP_CASTEiJ_T0079821.1 MGP_CASTEiJ_G0030261.1 mouse_genomes_project 6 118228308 118257641 - MGP_CASTEiJ_P0079821 Rassf4 protein_coding protein_coding MGP_CASTEiJ_T0080949.1 MGP_CASTEiJ_G0030516.1 mouse_genomes_project 6 142328203 142368702 + MGP_CASTEiJ_P0080949 protein_coding protein_coding MGP_CASTEiJ_T0080950.1 MGP_CASTEiJ_G0030516.1 mouse_genomes_project 6 142328219 142382799 + MGP_CASTEiJ_P0080950 protein_coding protein_coding MGP_CASTEiJ_T0080951.1 MGP_CASTEiJ_G0030516.1 mouse_genomes_project 6 142340395 142382906 + MGP_CASTEiJ_P0080951 protein_coding protein_coding MGP_CASTEiJ_T0080952.1 MGP_CASTEiJ_G0030516.1 mouse_genomes_project 6 142340398 142407868 + protein_coding processed_transcript MGP_CASTEiJ_T0080953.1 MGP_CASTEiJ_G0030516.1 mouse_genomes_project 6 142359037 142407868 + MGP_CASTEiJ_P0080953 protein_coding protein_coding MGP_CASTEiJ_T0080954.1 MGP_CASTEiJ_G0030516.1 mouse_genomes_project 6 142361246 142697677 + MGP_CASTEiJ_P0080954 protein_coding unknown_likely_coding MGP_CASTEiJ_T0080955.1 MGP_CASTEiJ_G0030516.1 mouse_genomes_project 6 142368102 142382574 + MGP_CASTEiJ_P0080955 protein_coding protein_coding MGP_CASTEiJ_T0080956.1 MGP_CASTEiJ_G0030516.1 mouse_genomes_project 6 142434945 142572136 + protein_coding processed_transcript MGP_CASTEiJ_T0080957.1 MGP_CASTEiJ_G0030516.1 mouse_genomes_project 6 142434945 142697671 + MGP_CASTEiJ_P0080957 protein_coding protein_coding MGP_CASTEiJ_T0080958.1 MGP_CASTEiJ_G0030516.1 mouse_genomes_project 6 142497189 142567589 + protein_coding retained_intron MGP_CASTEiJ_T0080959.1 MGP_CASTEiJ_G0030516.1 mouse_genomes_project 6 142560870 142697671 + protein_coding processed_transcript MGP_CASTEiJ_T0080960.1 MGP_CASTEiJ_G0030516.1 mouse_genomes_project 6 142560928 142583828 + protein_coding processed_transcript MGP_CASTEiJ_T0080961.1 MGP_CASTEiJ_G0030516.1 mouse_genomes_project 6 142561006 142623873 + protein_coding processed_transcript MGP_CASTEiJ_T0080963.1 MGP_CASTEiJ_G0030516.1 mouse_genomes_project 6 142564737 142697671 + MGP_CASTEiJ_P0080963 protein_coding protein_coding MGP_CASTEiJ_T0080964.1 MGP_CASTEiJ_G0030516.1 mouse_genomes_project 6 142642197 142663605 + protein_coding processed_transcript MGP_CASTEiJ_T0080096.1 MGP_CASTEiJ_G0030307.1 mouse_genomes_project 6 123674293 123810451 + protein_coding retained_intron MGP_CASTEiJ_T0080097.1 MGP_CASTEiJ_G0030307.1 mouse_genomes_project 6 123756998 123758512 + protein_coding retained_intron MGP_CASTEiJ_T0080098.1 MGP_CASTEiJ_G0030307.1 mouse_genomes_project 6 123757921 123892938 + protein_coding retained_intron MGP_CASTEiJ_T0079082.1 MGP_CASTEiJ_G0030126.1 mouse_genomes_project 6 91101730 91178563 + Aldh1l1 protein_coding processed_transcript MGP_CASTEiJ_T0079083.1 MGP_CASTEiJ_G0030126.1 mouse_genomes_project 6 91169983 91219506 + MGP_CASTEiJ_P0079083 Aldh1l1 protein_coding protein_coding MGP_CASTEiJ_T0079084.1 MGP_CASTEiJ_G0030126.1 mouse_genomes_project 6 91169999 91218463 + MGP_CASTEiJ_P0079084 Aldh1l1 protein_coding protein_coding MGP_CASTEiJ_T0079085.1 MGP_CASTEiJ_G0030126.1 mouse_genomes_project 6 91170037 91179137 + MGP_CASTEiJ_P0079085 Aldh1l1 protein_coding protein_coding MGP_CASTEiJ_T0079086.1 MGP_CASTEiJ_G0030126.1 mouse_genomes_project 6 91170042 91218454 + MGP_CASTEiJ_P0079086 Aldh1l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079087.1 MGP_CASTEiJ_G0030126.1 mouse_genomes_project 6 91187286 91190464 + Aldh1l1 protein_coding processed_transcript MGP_CASTEiJ_T0079088.1 MGP_CASTEiJ_G0030126.1 mouse_genomes_project 6 91208605 91216391 + Aldh1l1 protein_coding retained_intron MGP_CASTEiJ_T0008346.1 MGP_CASTEiJ_G0006768.1 mouse_genomes_project 6 32054332 32062204 + Gm13860 lincRNA lincRNA MGP_CASTEiJ_T0002027.1 MGP_CASTEiJ_G0001948.1 mouse_genomes_project 6 100657727 100661508 - TEC TEC MGP_CASTEiJ_T0010463.1 MGP_CASTEiJ_G0008651.1 mouse_genomes_project 6 34287557 34287704 + Gm25111 miRNA miRNA MGP_CASTEiJ_T0078341.1 MGP_CASTEiJ_G0029975.1 mouse_genomes_project 6 72726764 72939905 - MGP_CASTEiJ_P0078341 Dnah6 protein_coding protein_coding MGP_CASTEiJ_T0078342.1 MGP_CASTEiJ_G0029975.1 mouse_genomes_project 6 72726767 72939925 - MGP_CASTEiJ_P0078342 Dnah6 protein_coding protein_coding MGP_CASTEiJ_T0078343.1 MGP_CASTEiJ_G0029975.1 mouse_genomes_project 6 72726769 72939962 - MGP_CASTEiJ_P0078343 Dnah6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0078344.1 MGP_CASTEiJ_G0029975.1 mouse_genomes_project 6 72726900 72938059 - MGP_CASTEiJ_P0078344 Dnah6 protein_coding protein_coding MGP_CASTEiJ_T0078345.1 MGP_CASTEiJ_G0029975.1 mouse_genomes_project 6 72799666 72852333 - Dnah6 protein_coding retained_intron MGP_CASTEiJ_T0078674.1 MGP_CASTEiJ_G0030041.1 mouse_genomes_project 6 85727493 85743224 + MGP_CASTEiJ_P0078674 Smyd5 protein_coding protein_coding MGP_CASTEiJ_T0078675.1 MGP_CASTEiJ_G0030041.1 mouse_genomes_project 6 85727506 85737143 + Smyd5 protein_coding retained_intron MGP_CASTEiJ_T0078676.1 MGP_CASTEiJ_G0030041.1 mouse_genomes_project 6 85727577 85728323 + Smyd5 protein_coding retained_intron MGP_CASTEiJ_T0078677.1 MGP_CASTEiJ_G0030041.1 mouse_genomes_project 6 85735944 85738756 + Smyd5 protein_coding retained_intron MGP_CASTEiJ_T0078678.1 MGP_CASTEiJ_G0030041.1 mouse_genomes_project 6 85738430 85742232 + Smyd5 protein_coding retained_intron MGP_CASTEiJ_T0078679.1 MGP_CASTEiJ_G0030041.1 mouse_genomes_project 6 85738525 85741749 + Smyd5 protein_coding processed_transcript MGP_CASTEiJ_T0078680.1 MGP_CASTEiJ_G0030041.1 mouse_genomes_project 6 85738540 85741986 + Smyd5 protein_coding retained_intron MGP_CASTEiJ_T0078681.1 MGP_CASTEiJ_G0030041.1 mouse_genomes_project 6 85739373 85742221 + Smyd5 protein_coding processed_transcript MGP_CASTEiJ_T0080167.1 MGP_CASTEiJ_G0030323.1 mouse_genomes_project 6 124855311 124868376 + MGP_CASTEiJ_P0080167 Clec4a1 protein_coding protein_coding MGP_CASTEiJ_T0078011.1 MGP_CASTEiJ_G0029902.1 mouse_genomes_project 6 56613749 56614770 - MGP_CASTEiJ_P0078011 protein_coding protein_coding MGP_CASTEiJ_T0079438.1 MGP_CASTEiJ_G0030196.1 mouse_genomes_project 6 114094496 114168068 - MGP_CASTEiJ_P0079438 Rad18 protein_coding protein_coding MGP_CASTEiJ_T0079439.1 MGP_CASTEiJ_G0030196.1 mouse_genomes_project 6 114094591 114167986 - MGP_CASTEiJ_P0079439 Rad18 protein_coding protein_coding MGP_CASTEiJ_T0079440.1 MGP_CASTEiJ_G0030196.1 mouse_genomes_project 6 114094619 114167993 - MGP_CASTEiJ_P0079440 Rad18 protein_coding protein_coding MGP_CASTEiJ_T0079441.1 MGP_CASTEiJ_G0030196.1 mouse_genomes_project 6 114094621 114168052 - MGP_CASTEiJ_P0079441 Rad18 protein_coding protein_coding MGP_CASTEiJ_T0079442.1 MGP_CASTEiJ_G0030196.1 mouse_genomes_project 6 114095473 114147366 - MGP_CASTEiJ_P0079442 Rad18 protein_coding protein_coding MGP_CASTEiJ_T0079443.1 MGP_CASTEiJ_G0030196.1 mouse_genomes_project 6 114101023 114168030 - Rad18 protein_coding processed_transcript MGP_CASTEiJ_T0079444.1 MGP_CASTEiJ_G0030196.1 mouse_genomes_project 6 114120757 114168015 - MGP_CASTEiJ_P0079444 Rad18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079445.1 MGP_CASTEiJ_G0030196.1 mouse_genomes_project 6 114134180 114168026 - Rad18 protein_coding retained_intron MGP_CASTEiJ_T0014886.1 MGP_CASTEiJ_G0013049.1 mouse_genomes_project 6 71250506 71251090 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080947.1 MGP_CASTEiJ_G0030514.1 mouse_genomes_project 6 141328329 141329785 - MGP_CASTEiJ_P0080947 Igbp1b protein_coding protein_coding MGP_CASTEiJ_T0077871.1 MGP_CASTEiJ_G0029859.1 mouse_genomes_project 6 53058804 53078677 - MGP_CASTEiJ_P0077871 Fkbp14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077872.1 MGP_CASTEiJ_G0029859.1 mouse_genomes_project 6 53060221 53078706 - MGP_CASTEiJ_P0077872 Fkbp14 protein_coding protein_coding MGP_CASTEiJ_T0077873.1 MGP_CASTEiJ_G0029859.1 mouse_genomes_project 6 53060949 53082896 - MGP_CASTEiJ_P0077873 Fkbp14 protein_coding protein_coding MGP_CASTEiJ_T0077874.1 MGP_CASTEiJ_G0029859.1 mouse_genomes_project 6 53061508 53069967 - Fkbp14 protein_coding retained_intron MGP_CASTEiJ_T0077875.1 MGP_CASTEiJ_G0029859.1 mouse_genomes_project 6 53066514 53069718 - Fkbp14 protein_coding processed_transcript MGP_CASTEiJ_T0077876.1 MGP_CASTEiJ_G0029859.1 mouse_genomes_project 6 53069354 53078691 - Fkbp14 protein_coding retained_intron MGP_CASTEiJ_T0077877.1 MGP_CASTEiJ_G0029859.1 mouse_genomes_project 6 53080843 53082881 - Fkbp14 protein_coding retained_intron MGP_CASTEiJ_T0076725.1 MGP_CASTEiJ_G0029596.1 mouse_genomes_project 6 21915637 21929900 + MGP_CASTEiJ_P0076725 Hyal6 protein_coding protein_coding MGP_CASTEiJ_T0078590.1 MGP_CASTEiJ_G0030029.1 mouse_genomes_project 6 83988782 83996388 + MGP_CASTEiJ_P0078590 Nagk protein_coding protein_coding MGP_CASTEiJ_T0078591.1 MGP_CASTEiJ_G0030029.1 mouse_genomes_project 6 83988828 83996386 + MGP_CASTEiJ_P0078591 Nagk protein_coding protein_coding MGP_CASTEiJ_T0078592.1 MGP_CASTEiJ_G0030029.1 mouse_genomes_project 6 83988961 83992421 + Nagk protein_coding retained_intron MGP_CASTEiJ_T0078593.1 MGP_CASTEiJ_G0030029.1 mouse_genomes_project 6 83989008 83996166 + Nagk protein_coding processed_transcript MGP_CASTEiJ_T0078594.1 MGP_CASTEiJ_G0030029.1 mouse_genomes_project 6 83989035 83997252 + MGP_CASTEiJ_P0078594 Nagk protein_coding protein_coding MGP_CASTEiJ_T0078595.1 MGP_CASTEiJ_G0030029.1 mouse_genomes_project 6 83990042 83990796 + Nagk protein_coding retained_intron MGP_CASTEiJ_T0078596.1 MGP_CASTEiJ_G0030029.1 mouse_genomes_project 6 83990826 83994091 + Nagk protein_coding retained_intron MGP_CASTEiJ_T0078597.1 MGP_CASTEiJ_G0030029.1 mouse_genomes_project 6 83991744 83993165 + Nagk protein_coding retained_intron MGP_CASTEiJ_T0078598.1 MGP_CASTEiJ_G0030029.1 mouse_genomes_project 6 83991777 83994955 + Nagk protein_coding processed_transcript MGP_CASTEiJ_T0078599.1 MGP_CASTEiJ_G0030029.1 mouse_genomes_project 6 83995979 83997846 + Nagk protein_coding retained_intron MGP_CASTEiJ_T0010445.1 MGP_CASTEiJ_G0008633.1 mouse_genomes_project 6 437042 437149 - Mir489 miRNA miRNA MGP_CASTEiJ_T0005482.1 MGP_CASTEiJ_G0004625.1 mouse_genomes_project 6 116608763 116615993 - Gm17733 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0079588.1 MGP_CASTEiJ_G0030218.1 mouse_genomes_project 6 115130880 115134867 - MGP_CASTEiJ_P0079588 Fancd2os protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079589.1 MGP_CASTEiJ_G0030218.1 mouse_genomes_project 6 115130881 115134867 - MGP_CASTEiJ_P0079589 Fancd2os protein_coding protein_coding MGP_CASTEiJ_T0078154.1 MGP_CASTEiJ_G0029935.1 mouse_genomes_project 6 66826350 66903491 - MGP_CASTEiJ_P0078154 Il23r protein_coding protein_coding MGP_CASTEiJ_T0001910.1 MGP_CASTEiJ_G0001831.1 mouse_genomes_project 6 44143301 44147652 + TEC TEC MGP_CASTEiJ_T0001843.1 MGP_CASTEiJ_G0001764.1 mouse_genomes_project 6 1323343 1326142 - TEC TEC MGP_CASTEiJ_T0002113.1 MGP_CASTEiJ_G0002033.1 mouse_genomes_project 6 149882521 149883448 - TEC TEC MGP_CASTEiJ_T0077720.1 MGP_CASTEiJ_G0029826.1 mouse_genomes_project 6 48371773 48376399 - Dfna5 protein_coding retained_intron MGP_CASTEiJ_T0077721.1 MGP_CASTEiJ_G0029826.1 mouse_genomes_project 6 48372250 48448379 - MGP_CASTEiJ_P0077721 Dfna5 protein_coding protein_coding MGP_CASTEiJ_T0077724.1 MGP_CASTEiJ_G0029826.1 mouse_genomes_project 6 48385745 48448371 - MGP_CASTEiJ_P0077724 Dfna5 protein_coding protein_coding MGP_CASTEiJ_T0077725.1 MGP_CASTEiJ_G0029826.1 mouse_genomes_project 6 48392919 48450494 - MGP_CASTEiJ_P0077725 Dfna5 protein_coding protein_coding MGP_CASTEiJ_T0077726.1 MGP_CASTEiJ_G0029826.1 mouse_genomes_project 6 48392921 48448393 - MGP_CASTEiJ_P0077726 Dfna5 protein_coding protein_coding MGP_CASTEiJ_T0077727.1 MGP_CASTEiJ_G0029826.1 mouse_genomes_project 6 48432373 48448650 - MGP_CASTEiJ_P0077727 Dfna5 protein_coding protein_coding MGP_CASTEiJ_T0077728.1 MGP_CASTEiJ_G0029826.1 mouse_genomes_project 6 48446003 48448599 - Dfna5 protein_coding retained_intron MGP_CASTEiJ_T0101191.1 MGP_CASTEiJ_G0038104.1 mouse_genomes_project 6 94264826 94264956 + Gm22312 snoRNA snoRNA MGP_CASTEiJ_T0080722.1 MGP_CASTEiJ_G0030459.1 mouse_genomes_project 6 135199401 135200331 + MGP_CASTEiJ_P0080722 Tas2r124 protein_coding protein_coding MGP_CASTEiJ_T0080039.1 MGP_CASTEiJ_G0030297.1 mouse_genomes_project 6 122654466 122689529 + Bcl2l13 protein_coding retained_intron MGP_CASTEiJ_T0080040.1 MGP_CASTEiJ_G0030297.1 mouse_genomes_project 6 122654466 122687301 + MGP_CASTEiJ_P0080040 Bcl2l13 protein_coding protein_coding MGP_CASTEiJ_T0080041.1 MGP_CASTEiJ_G0030297.1 mouse_genomes_project 6 122654480 122697657 + MGP_CASTEiJ_P0080041 Bcl2l13 protein_coding protein_coding MGP_CASTEiJ_T0080042.1 MGP_CASTEiJ_G0030297.1 mouse_genomes_project 6 122654492 122716500 + MGP_CASTEiJ_P0080042 Bcl2l13 protein_coding protein_coding MGP_CASTEiJ_T0002498.1 MGP_CASTEiJ_G0002407.1 mouse_genomes_project 6 39377673 39377720 + MGP_CASTEiJ_P0002498 Trbj2-7 TR_J_gene TR_J_gene MGP_CASTEiJ_T0077067.1 MGP_CASTEiJ_G0029656.1 mouse_genomes_project 6 31905045 31919047 + MGP_CASTEiJ_P0077067 Akr1b10 protein_coding protein_coding MGP_CASTEiJ_T0077068.1 MGP_CASTEiJ_G0029656.1 mouse_genomes_project 6 31905076 31911707 + Akr1b10 protein_coding retained_intron MGP_CASTEiJ_T0077069.1 MGP_CASTEiJ_G0029656.1 mouse_genomes_project 6 31905108 31918845 + MGP_CASTEiJ_P0077069 Akr1b10 protein_coding protein_coding MGP_CASTEiJ_T0077070.1 MGP_CASTEiJ_G0029656.1 mouse_genomes_project 6 31905108 31919044 + MGP_CASTEiJ_P0077070 Akr1b10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077071.1 MGP_CASTEiJ_G0029656.1 mouse_genomes_project 6 31911726 31912695 + Akr1b10 protein_coding retained_intron MGP_CASTEiJ_T0077072.1 MGP_CASTEiJ_G0029656.1 mouse_genomes_project 6 31913578 31915103 + Akr1b10 protein_coding retained_intron MGP_CASTEiJ_T0079119.1 MGP_CASTEiJ_G0030131.1 mouse_genomes_project 6 91856445 91917965 + MGP_CASTEiJ_P0079119 Fbln2 protein_coding protein_coding MGP_CASTEiJ_T0079120.1 MGP_CASTEiJ_G0030131.1 mouse_genomes_project 6 91856445 91917966 + MGP_CASTEiJ_P0079120 Fbln2 protein_coding protein_coding MGP_CASTEiJ_T0079121.1 MGP_CASTEiJ_G0030131.1 mouse_genomes_project 6 91856812 91877188 + MGP_CASTEiJ_P0079121 Fbln2 protein_coding protein_coding MGP_CASTEiJ_T0079122.1 MGP_CASTEiJ_G0030131.1 mouse_genomes_project 6 91856814 91877367 + MGP_CASTEiJ_P0079122 Fbln2 protein_coding protein_coding MGP_CASTEiJ_T0079123.1 MGP_CASTEiJ_G0030131.1 mouse_genomes_project 6 91856817 91858235 + Fbln2 protein_coding processed_transcript MGP_CASTEiJ_T0079124.1 MGP_CASTEiJ_G0030131.1 mouse_genomes_project 6 91856821 91877387 + MGP_CASTEiJ_P0079124 Fbln2 protein_coding protein_coding MGP_CASTEiJ_T0079125.1 MGP_CASTEiJ_G0030131.1 mouse_genomes_project 6 91900017 91903257 + Fbln2 protein_coding retained_intron MGP_CASTEiJ_T0079126.1 MGP_CASTEiJ_G0030131.1 mouse_genomes_project 6 91900420 91908832 + Fbln2 protein_coding retained_intron MGP_CASTEiJ_T0079127.1 MGP_CASTEiJ_G0030131.1 mouse_genomes_project 6 91911311 91917854 + Fbln2 protein_coding retained_intron MGP_CASTEiJ_T0008516.1 MGP_CASTEiJ_G0006899.1 mouse_genomes_project 6 131296008 131298792 - lincRNA lincRNA MGP_CASTEiJ_T0014866.1 MGP_CASTEiJ_G0013029.1 mouse_genomes_project 6 66108901 66109358 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079250.1 MGP_CASTEiJ_G0030158.1 mouse_genomes_project 6 97719807 97936742 - MGP_CASTEiJ_P0079250 Fam19a4 protein_coding protein_coding MGP_CASTEiJ_T0079251.1 MGP_CASTEiJ_G0030158.1 mouse_genomes_project 6 97932957 97936722 - Fam19a4 protein_coding retained_intron MGP_CASTEiJ_T0080616.1 MGP_CASTEiJ_G0030419.1 mouse_genomes_project 6 131422841 131425286 - MGP_CASTEiJ_P0080616 Isg20l2 protein_coding protein_coding MGP_CASTEiJ_T0002589.1 MGP_CASTEiJ_G0002485.1 mouse_genomes_project 6 38778735 38779392 + MGP_CASTEiJ_P0002589 Trbv1 TR_V_gene TR_V_gene MGP_CASTEiJ_T0014840.1 MGP_CASTEiJ_G0013003.1 mouse_genomes_project 6 61778374 61779506 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078156.1 MGP_CASTEiJ_G0029937.1 mouse_genomes_project 6 70273204 70303441 - MGP_CASTEiJ_P0078156 Rpia protein_coding unknown_likely_coding MGP_CASTEiJ_T0078157.1 MGP_CASTEiJ_G0029937.1 mouse_genomes_project 6 70274309 70303684 - MGP_CASTEiJ_P0078157 Rpia protein_coding protein_coding MGP_CASTEiJ_T0078158.1 MGP_CASTEiJ_G0029937.1 mouse_genomes_project 6 70274873 70283262 - Rpia protein_coding retained_intron MGP_CASTEiJ_T0078159.1 MGP_CASTEiJ_G0029937.1 mouse_genomes_project 6 70292709 70303455 - Rpia protein_coding retained_intron MGP_CASTEiJ_T0081057.1 MGP_CASTEiJ_G0030539.1 mouse_genomes_project 6 145395038 145401817 - MGP_CASTEiJ_P0081057 Kcnj8 protein_coding protein_coding MGP_CASTEiJ_T0081058.1 MGP_CASTEiJ_G0030539.1 mouse_genomes_project 6 145395040 145401574 - MGP_CASTEiJ_P0081058 Kcnj8 protein_coding protein_coding MGP_CASTEiJ_T0015097.1 MGP_CASTEiJ_G0013260.1 mouse_genomes_project 6 149805330 149816388 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000159.1 MGP_CASTEiJ_G0000121.1 mouse_genomes_project 6 67815455 67817942 + MGP_CASTEiJ_P0000159 IG_V_gene IG_V_gene MGP_CASTEiJ_T0001922.1 MGP_CASTEiJ_G0001843.1 mouse_genomes_project 6 53182298 53182710 + TEC TEC MGP_CASTEiJ_T0015021.1 MGP_CASTEiJ_G0013184.1 mouse_genomes_project 6 124460567 124460758 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004933.1 MGP_CASTEiJ_G0004218.1 mouse_genomes_project 6 117363543 117370180 + antisense antisense MGP_CASTEiJ_T0001914.1 MGP_CASTEiJ_G0001835.1 mouse_genomes_project 6 47399508 47400951 + TEC TEC MGP_CASTEiJ_T0080644.1 MGP_CASTEiJ_G0030428.1 mouse_genomes_project 6 131931535 131954430 - MGP_CASTEiJ_P0080644 Clec1a protein_coding protein_coding MGP_CASTEiJ_T0080645.1 MGP_CASTEiJ_G0030428.1 mouse_genomes_project 6 131932584 131954564 - MGP_CASTEiJ_P0080645 Clec1a protein_coding protein_coding MGP_CASTEiJ_T0080646.1 MGP_CASTEiJ_G0030428.1 mouse_genomes_project 6 131932655 131954548 - MGP_CASTEiJ_P0080646 Clec1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0004811.1 MGP_CASTEiJ_G0004140.1 mouse_genomes_project 6 41367815 41374137 + 9430018G01Rik antisense antisense MGP_CASTEiJ_T0077787.1 MGP_CASTEiJ_G0029841.1 mouse_genomes_project 6 50566928 50569763 - MGP_CASTEiJ_P0077787 Hoxa5 protein_coding protein_coding MGP_CASTEiJ_T0077962.1 MGP_CASTEiJ_G0029880.1 mouse_genomes_project 6 55440105 55485002 - MGP_CASTEiJ_P0077962 Nt5c3 protein_coding protein_coding MGP_CASTEiJ_T0077963.1 MGP_CASTEiJ_G0029880.1 mouse_genomes_project 6 55440105 55459935 - MGP_CASTEiJ_P0077963 Nt5c3 protein_coding protein_coding MGP_CASTEiJ_T0077964.1 MGP_CASTEiJ_G0029880.1 mouse_genomes_project 6 55440656 55484889 - MGP_CASTEiJ_P0077964 Nt5c3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077965.1 MGP_CASTEiJ_G0029880.1 mouse_genomes_project 6 55440689 55484946 - MGP_CASTEiJ_P0077965 Nt5c3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077966.1 MGP_CASTEiJ_G0029880.1 mouse_genomes_project 6 55442501 55484794 - MGP_CASTEiJ_P0077966 Nt5c3 protein_coding protein_coding MGP_CASTEiJ_T0077967.1 MGP_CASTEiJ_G0029880.1 mouse_genomes_project 6 55444366 55447564 - Nt5c3 protein_coding retained_intron MGP_CASTEiJ_T0077968.1 MGP_CASTEiJ_G0029880.1 mouse_genomes_project 6 55449211 55484960 - Nt5c3 protein_coding processed_transcript MGP_CASTEiJ_T0077969.1 MGP_CASTEiJ_G0029880.1 mouse_genomes_project 6 55450472 55484927 - Nt5c3 protein_coding processed_transcript MGP_CASTEiJ_T0077970.1 MGP_CASTEiJ_G0029880.1 mouse_genomes_project 6 55453490 55459932 - Nt5c3 protein_coding retained_intron MGP_CASTEiJ_T0004794.1 MGP_CASTEiJ_G0004126.1 mouse_genomes_project 6 32259447 32259681 - Npn2 antisense antisense MGP_CASTEiJ_T0004795.1 MGP_CASTEiJ_G0004126.1 mouse_genomes_project 6 32259605 32259680 - Npn2 antisense antisense MGP_CASTEiJ_T0011336.1 MGP_CASTEiJ_G0009524.1 mouse_genomes_project 6 124154074 124154323 - Gm27826 misc_RNA misc_RNA MGP_CASTEiJ_T0076670.1 MGP_CASTEiJ_G0029581.1 mouse_genomes_project 6 19466816 19472174 + MGP_CASTEiJ_P0076670 Wnt16 protein_coding protein_coding MGP_CASTEiJ_T0076671.1 MGP_CASTEiJ_G0029581.1 mouse_genomes_project 6 19466819 19477210 + MGP_CASTEiJ_P0076671 Wnt16 protein_coding protein_coding MGP_CASTEiJ_T0076672.1 MGP_CASTEiJ_G0029581.1 mouse_genomes_project 6 19466877 19473180 + MGP_CASTEiJ_P0076672 Wnt16 protein_coding protein_coding MGP_CASTEiJ_T0076673.1 MGP_CASTEiJ_G0029581.1 mouse_genomes_project 6 19467451 19476515 + MGP_CASTEiJ_P0076673 Wnt16 protein_coding protein_coding MGP_CASTEiJ_T0080380.1 MGP_CASTEiJ_G0030367.1 mouse_genomes_project 6 127222728 127259959 + MGP_CASTEiJ_P0080380 Chd4 protein_coding protein_coding MGP_CASTEiJ_T0080381.1 MGP_CASTEiJ_G0030367.1 mouse_genomes_project 6 127222728 127259953 + MGP_CASTEiJ_P0080381 Chd4 protein_coding protein_coding MGP_CASTEiJ_T0080382.1 MGP_CASTEiJ_G0030367.1 mouse_genomes_project 6 127222909 127259959 + MGP_CASTEiJ_P0080382 Chd4 protein_coding protein_coding MGP_CASTEiJ_T0080383.1 MGP_CASTEiJ_G0030367.1 mouse_genomes_project 6 127222924 127224117 + Chd4 protein_coding retained_intron MGP_CASTEiJ_T0080384.1 MGP_CASTEiJ_G0030367.1 mouse_genomes_project 6 127223314 127227263 + MGP_CASTEiJ_P0080384 Chd4 protein_coding protein_coding MGP_CASTEiJ_T0080385.1 MGP_CASTEiJ_G0030367.1 mouse_genomes_project 6 127241341 127243963 + Chd4 protein_coding retained_intron MGP_CASTEiJ_T0080386.1 MGP_CASTEiJ_G0030367.1 mouse_genomes_project 6 127241369 127251284 + MGP_CASTEiJ_P0080386 Chd4 protein_coding protein_coding MGP_CASTEiJ_T0080387.1 MGP_CASTEiJ_G0030367.1 mouse_genomes_project 6 127249108 127250207 + Chd4 protein_coding retained_intron MGP_CASTEiJ_T0014930.1 MGP_CASTEiJ_G0013093.1 mouse_genomes_project 6 86683481 86684489 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008534.1 MGP_CASTEiJ_G0006908.1 mouse_genomes_project 6 142028685 142035649 - 4922502N22Rik lincRNA lincRNA MGP_CASTEiJ_T0079435.1 MGP_CASTEiJ_G0030194.1 mouse_genomes_project 6 113933477 113946906 + MGP_CASTEiJ_P0079435 Cav3 protein_coding protein_coding MGP_CASTEiJ_T0008501.1 MGP_CASTEiJ_G0006884.1 mouse_genomes_project 6 121645973 121652468 - 4930540M05Rik lincRNA lincRNA MGP_CASTEiJ_T0077203.1 MGP_CASTEiJ_G0029682.1 mouse_genomes_project 6 36020815 36077965 - MGP_CASTEiJ_P0077203 Zc3hav1 protein_coding protein_coding MGP_CASTEiJ_T0077204.1 MGP_CASTEiJ_G0029682.1 mouse_genomes_project 6 36025879 36077965 - MGP_CASTEiJ_P0077204 Zc3hav1 protein_coding protein_coding MGP_CASTEiJ_T0077205.1 MGP_CASTEiJ_G0029682.1 mouse_genomes_project 6 36031775 36078295 - MGP_CASTEiJ_P0077205 Zc3hav1 protein_coding protein_coding MGP_CASTEiJ_T0077206.1 MGP_CASTEiJ_G0029682.1 mouse_genomes_project 6 36031775 36078295 - MGP_CASTEiJ_P0077206 Zc3hav1 protein_coding protein_coding MGP_CASTEiJ_T0077207.1 MGP_CASTEiJ_G0029682.1 mouse_genomes_project 6 36055239 36077986 - MGP_CASTEiJ_P0077207 Zc3hav1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014986.1 MGP_CASTEiJ_G0013149.1 mouse_genomes_project 6 114040058 114041625 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101205.1 MGP_CASTEiJ_G0038118.1 mouse_genomes_project 6 125708413 125708571 - Gm22724 snoRNA snoRNA MGP_CASTEiJ_T0004927.1 MGP_CASTEiJ_G0004212.1 mouse_genomes_project 6 115143797 115145468 - Gm44199 antisense antisense MGP_CASTEiJ_T0014989.1 MGP_CASTEiJ_G0013152.1 mouse_genomes_project 6 114853900 114859122 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081029.1 MGP_CASTEiJ_G0030533.1 mouse_genomes_project 6 145166723 145184716 + MGP_CASTEiJ_P0081029 Pyroxd1 protein_coding protein_coding MGP_CASTEiJ_T0081030.1 MGP_CASTEiJ_G0030533.1 mouse_genomes_project 6 145166736 145168931 + Pyroxd1 protein_coding retained_intron MGP_CASTEiJ_T0081031.1 MGP_CASTEiJ_G0030533.1 mouse_genomes_project 6 145166747 145183510 + Pyroxd1 protein_coding retained_intron MGP_CASTEiJ_T0081032.1 MGP_CASTEiJ_G0030533.1 mouse_genomes_project 6 145167984 145178988 + Pyroxd1 protein_coding processed_transcript MGP_CASTEiJ_T0081034.1 MGP_CASTEiJ_G0030533.1 mouse_genomes_project 6 145174475 145176204 + Pyroxd1 protein_coding retained_intron MGP_CASTEiJ_T0004983.1 MGP_CASTEiJ_G0004262.1 mouse_genomes_project 6 147681292 147682630 + Sox5os5 antisense antisense MGP_CASTEiJ_T0004946.1 MGP_CASTEiJ_G0004231.1 mouse_genomes_project 6 127637418 127641704 + Gm28809 antisense antisense MGP_CASTEiJ_T0004947.1 MGP_CASTEiJ_G0004231.1 mouse_genomes_project 6 127637999 127639648 + Gm28809 antisense antisense MGP_CASTEiJ_T0002083.1 MGP_CASTEiJ_G0002003.1 mouse_genomes_project 6 132260945 132261330 - TEC TEC MGP_CASTEiJ_T0101157.1 MGP_CASTEiJ_G0038070.1 mouse_genomes_project 6 22263800 22263932 - Gm24443 snoRNA snoRNA MGP_CASTEiJ_T0077841.1 MGP_CASTEiJ_G0029855.1 mouse_genomes_project 6 52489577 52519221 + Chn2 protein_coding processed_transcript MGP_CASTEiJ_T0077842.1 MGP_CASTEiJ_G0029855.1 mouse_genomes_project 6 52489596 52758323 + MGP_CASTEiJ_P0077842 Chn2 protein_coding protein_coding MGP_CASTEiJ_T0077843.1 MGP_CASTEiJ_G0029855.1 mouse_genomes_project 6 52489636 52678890 + MGP_CASTEiJ_P0077843 Chn2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077844.1 MGP_CASTEiJ_G0029855.1 mouse_genomes_project 6 52490062 52680835 + Chn2 protein_coding processed_transcript MGP_CASTEiJ_T0077845.1 MGP_CASTEiJ_G0029855.1 mouse_genomes_project 6 52490109 52652693 + MGP_CASTEiJ_P0077845 Chn2 protein_coding protein_coding MGP_CASTEiJ_T0077846.1 MGP_CASTEiJ_G0029855.1 mouse_genomes_project 6 52549196 52678857 + Chn2 protein_coding processed_transcript MGP_CASTEiJ_T0077847.1 MGP_CASTEiJ_G0029855.1 mouse_genomes_project 6 52666129 52757908 + MGP_CASTEiJ_P0077847 Chn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077848.1 MGP_CASTEiJ_G0029855.1 mouse_genomes_project 6 52722982 52757896 + MGP_CASTEiJ_P0077848 Chn2 protein_coding protein_coding MGP_CASTEiJ_T0077849.1 MGP_CASTEiJ_G0029855.1 mouse_genomes_project 6 52725295 52757688 + MGP_CASTEiJ_P0077849 Chn2 protein_coding protein_coding MGP_CASTEiJ_T0077850.1 MGP_CASTEiJ_G0029855.1 mouse_genomes_project 6 52727310 52757994 + MGP_CASTEiJ_P0077850 Chn2 protein_coding protein_coding MGP_CASTEiJ_T0077851.1 MGP_CASTEiJ_G0029855.1 mouse_genomes_project 6 52730634 52759412 + MGP_CASTEiJ_P0077851 Chn2 protein_coding protein_coding MGP_CASTEiJ_T0077852.1 MGP_CASTEiJ_G0029855.1 mouse_genomes_project 6 52731052 52757847 + MGP_CASTEiJ_P0077852 Chn2 protein_coding protein_coding MGP_CASTEiJ_T0077853.1 MGP_CASTEiJ_G0029855.1 mouse_genomes_project 6 52731052 52757847 + MGP_CASTEiJ_P0077853 Chn2 protein_coding protein_coding MGP_CASTEiJ_T0077854.1 MGP_CASTEiJ_G0029855.1 mouse_genomes_project 6 52731052 52757847 + MGP_CASTEiJ_P0077854 Chn2 protein_coding protein_coding MGP_CASTEiJ_T0077855.1 MGP_CASTEiJ_G0029855.1 mouse_genomes_project 6 52731052 52757847 + MGP_CASTEiJ_P0077855 Chn2 protein_coding protein_coding MGP_CASTEiJ_T0077856.1 MGP_CASTEiJ_G0029855.1 mouse_genomes_project 6 52731052 52757847 + MGP_CASTEiJ_P0077856 Chn2 protein_coding protein_coding MGP_CASTEiJ_T0078220.1 MGP_CASTEiJ_G0029953.1 mouse_genomes_project 6 71435753 71487269 + MGP_CASTEiJ_P0078220 Immt protein_coding protein_coding MGP_CASTEiJ_T0078221.1 MGP_CASTEiJ_G0029953.1 mouse_genomes_project 6 71435755 71487275 + MGP_CASTEiJ_P0078221 Immt protein_coding protein_coding MGP_CASTEiJ_T0078222.1 MGP_CASTEiJ_G0029953.1 mouse_genomes_project 6 71435801 71465295 + Immt protein_coding retained_intron MGP_CASTEiJ_T0078223.1 MGP_CASTEiJ_G0029953.1 mouse_genomes_project 6 71435802 71471238 + MGP_CASTEiJ_P0078223 Immt protein_coding protein_coding MGP_CASTEiJ_T0078224.1 MGP_CASTEiJ_G0029953.1 mouse_genomes_project 6 71435832 71487282 + MGP_CASTEiJ_P0078224 Immt protein_coding protein_coding MGP_CASTEiJ_T0078225.1 MGP_CASTEiJ_G0029953.1 mouse_genomes_project 6 71435835 71487063 + MGP_CASTEiJ_P0078225 Immt protein_coding protein_coding MGP_CASTEiJ_T0078226.1 MGP_CASTEiJ_G0029953.1 mouse_genomes_project 6 71435840 71487275 + MGP_CASTEiJ_P0078226 Immt protein_coding protein_coding MGP_CASTEiJ_T0078227.1 MGP_CASTEiJ_G0029953.1 mouse_genomes_project 6 71435854 71489419 + MGP_CASTEiJ_P0078227 Immt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078228.1 MGP_CASTEiJ_G0029953.1 mouse_genomes_project 6 71435881 71467065 + MGP_CASTEiJ_P0078228 Immt protein_coding protein_coding MGP_CASTEiJ_T0078229.1 MGP_CASTEiJ_G0029953.1 mouse_genomes_project 6 71473538 71477005 + Immt protein_coding retained_intron MGP_CASTEiJ_T0078230.1 MGP_CASTEiJ_G0029953.1 mouse_genomes_project 6 71481584 71484636 + Immt protein_coding retained_intron MGP_CASTEiJ_T0078231.1 MGP_CASTEiJ_G0029953.1 mouse_genomes_project 6 71482691 71487279 + Immt protein_coding retained_intron MGP_CASTEiJ_T0078232.1 MGP_CASTEiJ_G0029953.1 mouse_genomes_project 6 71482969 71487072 + MGP_CASTEiJ_P0078232 Immt protein_coding protein_coding MGP_CASTEiJ_T0078233.1 MGP_CASTEiJ_G0029953.1 mouse_genomes_project 6 71483055 71486089 + MGP_CASTEiJ_P0078233 Immt protein_coding protein_coding MGP_CASTEiJ_T0076646.1 MGP_CASTEiJ_G0029577.1 mouse_genomes_project 6 18337305 18881081 + MGP_CASTEiJ_P0076646 Kcnd2 protein_coding protein_coding MGP_CASTEiJ_T0079872.1 MGP_CASTEiJ_G0030273.1 mouse_genomes_project 6 120075247 120102123 - MGP_CASTEiJ_P0079872 Zfp248 protein_coding protein_coding MGP_CASTEiJ_T0079873.1 MGP_CASTEiJ_G0030273.1 mouse_genomes_project 6 120076585 120102093 - MGP_CASTEiJ_P0079873 Zfp248 protein_coding protein_coding MGP_CASTEiJ_T0079874.1 MGP_CASTEiJ_G0030273.1 mouse_genomes_project 6 120081125 120102014 - Zfp248 protein_coding processed_transcript MGP_CASTEiJ_T0079875.1 MGP_CASTEiJ_G0030273.1 mouse_genomes_project 6 120081203 120101661 - MGP_CASTEiJ_P0079875 Zfp248 protein_coding protein_coding MGP_CASTEiJ_T0079876.1 MGP_CASTEiJ_G0030273.1 mouse_genomes_project 6 120099677 120102097 - Zfp248 protein_coding retained_intron MGP_CASTEiJ_T0079877.1 MGP_CASTEiJ_G0030273.1 mouse_genomes_project 6 120099710 120102066 - Zfp248 protein_coding retained_intron MGP_CASTEiJ_T0079878.1 MGP_CASTEiJ_G0030273.1 mouse_genomes_project 6 120099746 120101336 - Zfp248 protein_coding processed_transcript MGP_CASTEiJ_T0015023.1 MGP_CASTEiJ_G0013186.1 mouse_genomes_project 6 124556671 124557109 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014739.1 MGP_CASTEiJ_G0012902.1 mouse_genomes_project 6 15254885 15255847 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081156.1 MGP_CASTEiJ_G0030552.1 mouse_genomes_project 6 148371689 148654470 - MGP_CASTEiJ_P0081156 Lmntd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081157.1 MGP_CASTEiJ_G0030552.1 mouse_genomes_project 6 148405936 148469345 - MGP_CASTEiJ_P0081157 Lmntd1 protein_coding protein_coding MGP_CASTEiJ_T0081158.1 MGP_CASTEiJ_G0030552.1 mouse_genomes_project 6 148409694 148451418 - MGP_CASTEiJ_P0081158 Lmntd1 protein_coding protein_coding MGP_CASTEiJ_T0081159.1 MGP_CASTEiJ_G0030552.1 mouse_genomes_project 6 148446498 148450574 - MGP_CASTEiJ_P0081159 Lmntd1 protein_coding protein_coding MGP_CASTEiJ_T0081160.1 MGP_CASTEiJ_G0030552.1 mouse_genomes_project 6 148575758 148654516 - Lmntd1 protein_coding processed_transcript MGP_CASTEiJ_T0081161.1 MGP_CASTEiJ_G0030552.1 mouse_genomes_project 6 148615203 148654190 - Lmntd1 protein_coding processed_transcript MGP_CASTEiJ_T0001898.1 MGP_CASTEiJ_G0001819.1 mouse_genomes_project 6 43209660 43212466 + TEC TEC MGP_CASTEiJ_T0079333.1 MGP_CASTEiJ_G0030172.1 mouse_genomes_project 6 101259765 101327753 - MGP_CASTEiJ_P0079333 Rybp protein_coding protein_coding MGP_CASTEiJ_T0079334.1 MGP_CASTEiJ_G0030172.1 mouse_genomes_project 6 101263761 101268242 - Rybp protein_coding retained_intron MGP_CASTEiJ_T0079335.1 MGP_CASTEiJ_G0030172.1 mouse_genomes_project 6 101268204 101325308 - Rybp protein_coding retained_intron MGP_CASTEiJ_T0078466.1 MGP_CASTEiJ_G0030003.1 mouse_genomes_project 6 83199767 83200894 + MGP_CASTEiJ_P0078466 Pcgf1 protein_coding protein_coding MGP_CASTEiJ_T0078467.1 MGP_CASTEiJ_G0030003.1 mouse_genomes_project 6 83200244 83202754 + MGP_CASTEiJ_P0078467 Pcgf1 protein_coding protein_coding MGP_CASTEiJ_T0078468.1 MGP_CASTEiJ_G0030003.1 mouse_genomes_project 6 83200320 83202656 + MGP_CASTEiJ_P0078468 Pcgf1 protein_coding protein_coding MGP_CASTEiJ_T0078469.1 MGP_CASTEiJ_G0030003.1 mouse_genomes_project 6 83200528 83202656 + MGP_CASTEiJ_P0078469 Pcgf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078470.1 MGP_CASTEiJ_G0030003.1 mouse_genomes_project 6 83200589 83202656 + MGP_CASTEiJ_P0078470 Pcgf1 protein_coding protein_coding MGP_CASTEiJ_T0078471.1 MGP_CASTEiJ_G0030003.1 mouse_genomes_project 6 83200616 83201609 + Pcgf1 protein_coding retained_intron MGP_CASTEiJ_T0078472.1 MGP_CASTEiJ_G0030003.1 mouse_genomes_project 6 83201918 83202753 + Pcgf1 protein_coding retained_intron MGP_CASTEiJ_T0077127.1 MGP_CASTEiJ_G0029664.1 mouse_genomes_project 6 32463315 32486950 + MGP_CASTEiJ_P0077127 Stra8 protein_coding protein_coding MGP_CASTEiJ_T0077128.1 MGP_CASTEiJ_G0029664.1 mouse_genomes_project 6 32464124 32486948 + MGP_CASTEiJ_P0077128 Stra8 protein_coding protein_coding MGP_CASTEiJ_T0077129.1 MGP_CASTEiJ_G0029664.1 mouse_genomes_project 6 32464168 32480839 + MGP_CASTEiJ_P0077129 Stra8 protein_coding protein_coding MGP_CASTEiJ_T0077130.1 MGP_CASTEiJ_G0029664.1 mouse_genomes_project 6 32464174 32486948 + MGP_CASTEiJ_P0077130 Stra8 protein_coding protein_coding MGP_CASTEiJ_T0008446.1 MGP_CASTEiJ_G0006842.1 mouse_genomes_project 6 88695962 88698254 - Gm44246 lincRNA lincRNA MGP_CASTEiJ_T0101179.1 MGP_CASTEiJ_G0038092.1 mouse_genomes_project 6 67276241 67276379 - Gm24911 snoRNA snoRNA MGP_CASTEiJ_T0011312.1 MGP_CASTEiJ_G0009500.1 mouse_genomes_project 6 50523904 50524047 + Gm27477 misc_RNA misc_RNA MGP_CASTEiJ_T0008443.1 MGP_CASTEiJ_G0006839.1 mouse_genomes_project 6 88072080 88073536 + Gm44201 lincRNA lincRNA MGP_CASTEiJ_T0014915.1 MGP_CASTEiJ_G0013078.1 mouse_genomes_project 6 83770657 83771426 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080720.1 MGP_CASTEiJ_G0030457.1 mouse_genomes_project 6 135148725 135149655 - MGP_CASTEiJ_P0080720 Tas2r122 protein_coding protein_coding MGP_CASTEiJ_T0001960.1 MGP_CASTEiJ_G0001881.1 mouse_genomes_project 6 77918363 77920415 + TEC TEC MGP_CASTEiJ_T0014953.1 MGP_CASTEiJ_G0013116.1 mouse_genomes_project 6 98343669 98345420 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002084.1 MGP_CASTEiJ_G0002004.1 mouse_genomes_project 6 135386864 135387177 - TEC TEC MGP_CASTEiJ_T0077998.1 MGP_CASTEiJ_G0029896.1 mouse_genomes_project 6 56284830 56382014 - MGP_CASTEiJ_P0077998 Vopp1 protein_coding protein_coding MGP_CASTEiJ_T0077999.1 MGP_CASTEiJ_G0029896.1 mouse_genomes_project 6 56310739 56382037 - MGP_CASTEiJ_P0077999 Vopp1 protein_coding protein_coding MGP_CASTEiJ_T0078000.1 MGP_CASTEiJ_G0029896.1 mouse_genomes_project 6 56313035 56382028 - MGP_CASTEiJ_P0078000 Vopp1 protein_coding protein_coding MGP_CASTEiJ_T0078001.1 MGP_CASTEiJ_G0029896.1 mouse_genomes_project 6 56316814 56382032 - MGP_CASTEiJ_P0078001 Vopp1 protein_coding protein_coding MGP_CASTEiJ_T0078002.1 MGP_CASTEiJ_G0029896.1 mouse_genomes_project 6 56320907 56382032 - MGP_CASTEiJ_P0078002 Vopp1 protein_coding protein_coding MGP_CASTEiJ_T0078003.1 MGP_CASTEiJ_G0029896.1 mouse_genomes_project 6 56321025 56381518 - Vopp1 protein_coding processed_transcript MGP_CASTEiJ_T0004791.1 MGP_CASTEiJ_G0004123.1 mouse_genomes_project 6 30488593 30493419 + Gm14540 antisense antisense MGP_CASTEiJ_T0001866.1 MGP_CASTEiJ_G0001787.1 mouse_genomes_project 6 20461243 20463495 + TEC TEC MGP_CASTEiJ_T0078715.1 MGP_CASTEiJ_G0030052.1 mouse_genomes_project 6 86206061 86209827 - MGP_CASTEiJ_P0078715 Nat8f2 protein_coding protein_coding MGP_CASTEiJ_T0080734.1 MGP_CASTEiJ_G0030471.1 mouse_genomes_project 6 135470906 135471834 - MGP_CASTEiJ_P0080734 Tas2r103 protein_coding protein_coding MGP_CASTEiJ_T0101218.1 MGP_CASTEiJ_G0038131.1 mouse_genomes_project 6 146362482 146362618 - Gm23272 snoRNA snoRNA MGP_CASTEiJ_T0076831.1 MGP_CASTEiJ_G0029620.1 mouse_genomes_project 6 26694431 26697566 + Ccdc136 protein_coding processed_transcript MGP_CASTEiJ_T0076832.1 MGP_CASTEiJ_G0029620.1 mouse_genomes_project 6 26694752 26727737 + MGP_CASTEiJ_P0076832 Ccdc136 protein_coding protein_coding MGP_CASTEiJ_T0076833.1 MGP_CASTEiJ_G0029620.1 mouse_genomes_project 6 26694765 26727732 + MGP_CASTEiJ_P0076833 Ccdc136 protein_coding protein_coding MGP_CASTEiJ_T0076834.1 MGP_CASTEiJ_G0029620.1 mouse_genomes_project 6 26694807 26727778 + MGP_CASTEiJ_P0076834 Ccdc136 protein_coding protein_coding MGP_CASTEiJ_T0076835.1 MGP_CASTEiJ_G0029620.1 mouse_genomes_project 6 26694807 26722903 + MGP_CASTEiJ_P0076835 Ccdc136 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076836.1 MGP_CASTEiJ_G0029620.1 mouse_genomes_project 6 26697048 26727732 + MGP_CASTEiJ_P0076836 Ccdc136 protein_coding protein_coding MGP_CASTEiJ_T0076837.1 MGP_CASTEiJ_G0029620.1 mouse_genomes_project 6 26697048 26727739 + MGP_CASTEiJ_P0076837 Ccdc136 protein_coding protein_coding MGP_CASTEiJ_T0076838.1 MGP_CASTEiJ_G0029620.1 mouse_genomes_project 6 26700970 26727641 + MGP_CASTEiJ_P0076838 Ccdc136 protein_coding protein_coding MGP_CASTEiJ_T0076839.1 MGP_CASTEiJ_G0029620.1 mouse_genomes_project 6 26700988 26721202 + MGP_CASTEiJ_P0076839 Ccdc136 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076840.1 MGP_CASTEiJ_G0029620.1 mouse_genomes_project 6 26710904 26727772 + MGP_CASTEiJ_P0076840 Ccdc136 protein_coding protein_coding MGP_CASTEiJ_T0076841.1 MGP_CASTEiJ_G0029620.1 mouse_genomes_project 6 26713293 26727736 + Ccdc136 protein_coding processed_transcript MGP_CASTEiJ_T0076842.1 MGP_CASTEiJ_G0029620.1 mouse_genomes_project 6 26715768 26727738 + Ccdc136 protein_coding processed_transcript MGP_CASTEiJ_T0102431.1 MGP_CASTEiJ_G0039156.1 mouse_genomes_project 6 134900982 134904357 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102370.1 MGP_CASTEiJ_G0039095.1 mouse_genomes_project 6 6854963 6855454 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0014941.1 MGP_CASTEiJ_G0013104.1 mouse_genomes_project 6 94425518 94426391 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000202.1 MGP_CASTEiJ_G0000152.1 mouse_genomes_project 6 69542032 69542613 - MGP_CASTEiJ_P0000202 Igkv6-32 IG_V_gene IG_V_gene MGP_CASTEiJ_T0014826.1 MGP_CASTEiJ_G0012989.1 mouse_genomes_project 6 56534345 56534509 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078115.1 MGP_CASTEiJ_G0029928.1 mouse_genomes_project 6 66179264 66180654 - MGP_CASTEiJ_P0078115 Vmn1r38 protein_coding protein_coding MGP_CASTEiJ_T0101170.1 MGP_CASTEiJ_G0038083.1 mouse_genomes_project 6 52316778 52316910 - Gm22910 snoRNA snoRNA MGP_CASTEiJ_T0004814.1 MGP_CASTEiJ_G0004143.1 mouse_genomes_project 6 48775672 48805353 + 5430402O13Rik antisense antisense MGP_CASTEiJ_T0004815.1 MGP_CASTEiJ_G0004143.1 mouse_genomes_project 6 48775767 48805310 + 5430402O13Rik antisense antisense MGP_CASTEiJ_T0078768.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815110 86845518 + MGP_CASTEiJ_P0078768 Tia1 protein_coding protein_coding MGP_CASTEiJ_T0078769.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815110 86843313 + MGP_CASTEiJ_P0078769 Tia1 protein_coding protein_coding MGP_CASTEiJ_T0078770.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815126 86816059 + Tia1 protein_coding retained_intron MGP_CASTEiJ_T0078771.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815173 86818003 + Tia1 protein_coding processed_transcript MGP_CASTEiJ_T0078772.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815182 86829258 + Tia1 protein_coding retained_intron MGP_CASTEiJ_T0078773.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815187 86831067 + Tia1 protein_coding processed_transcript MGP_CASTEiJ_T0078774.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815187 86839874 + MGP_CASTEiJ_P0078774 Tia1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078775.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815195 86842884 + Tia1 protein_coding retained_intron MGP_CASTEiJ_T0078776.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815204 86844297 + MGP_CASTEiJ_P0078776 Tia1 protein_coding protein_coding MGP_CASTEiJ_T0078777.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815205 86842883 + MGP_CASTEiJ_P0078777 Tia1 protein_coding protein_coding MGP_CASTEiJ_T0078778.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815208 86839929 + MGP_CASTEiJ_P0078778 Tia1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078779.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815214 86835973 + Tia1 protein_coding processed_transcript MGP_CASTEiJ_T0078780.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815216 86845340 + MGP_CASTEiJ_P0078780 Tia1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078781.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815227 86831113 + Tia1 protein_coding retained_intron MGP_CASTEiJ_T0078782.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815227 86844292 + MGP_CASTEiJ_P0078782 Tia1 protein_coding protein_coding MGP_CASTEiJ_T0078783.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815251 86831148 + Tia1 protein_coding retained_intron MGP_CASTEiJ_T0078784.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86815364 86837395 + Tia1 protein_coding retained_intron MGP_CASTEiJ_T0078785.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86825116 86834234 + Tia1 protein_coding retained_intron MGP_CASTEiJ_T0078786.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86827072 86829721 + Tia1 protein_coding retained_intron MGP_CASTEiJ_T0078787.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86830477 86835725 + Tia1 protein_coding processed_transcript MGP_CASTEiJ_T0078788.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86830669 86837619 + Tia1 protein_coding processed_transcript MGP_CASTEiJ_T0078789.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86831169 86835959 + Tia1 protein_coding retained_intron MGP_CASTEiJ_T0078790.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86831201 86836533 + Tia1 protein_coding retained_intron MGP_CASTEiJ_T0078791.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86831527 86839891 + Tia1 protein_coding retained_intron MGP_CASTEiJ_T0078792.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86833199 86836744 + Tia1 protein_coding retained_intron MGP_CASTEiJ_T0078793.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86835938 86837103 + Tia1 protein_coding retained_intron MGP_CASTEiJ_T0078794.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86837109 86837809 + Tia1 protein_coding retained_intron MGP_CASTEiJ_T0078795.1 MGP_CASTEiJ_G0030063.1 mouse_genomes_project 6 86837584 86842415 + MGP_CASTEiJ_P0078795 Tia1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011304.1 MGP_CASTEiJ_G0009492.1 mouse_genomes_project 6 28134872 28135102 + Gm27522 misc_RNA misc_RNA MGP_CASTEiJ_T0080317.1 MGP_CASTEiJ_G0030356.1 mouse_genomes_project 6 126964260 126969723 - MGP_CASTEiJ_P0080317 Gpr162 protein_coding protein_coding MGP_CASTEiJ_T0080318.1 MGP_CASTEiJ_G0030356.1 mouse_genomes_project 6 126964263 126969518 - Gpr162 protein_coding retained_intron MGP_CASTEiJ_T0080319.1 MGP_CASTEiJ_G0030356.1 mouse_genomes_project 6 126964264 126969789 - MGP_CASTEiJ_P0080319 Gpr162 protein_coding protein_coding MGP_CASTEiJ_T0080320.1 MGP_CASTEiJ_G0030356.1 mouse_genomes_project 6 126967532 126969518 - Gpr162 protein_coding processed_transcript MGP_CASTEiJ_T0077560.1 MGP_CASTEiJ_G0029790.1 mouse_genomes_project 6 46502081 46525811 + MGP_CASTEiJ_P0077560 Krba1 protein_coding protein_coding MGP_CASTEiJ_T0077561.1 MGP_CASTEiJ_G0029790.1 mouse_genomes_project 6 46502109 46523157 + MGP_CASTEiJ_P0077561 Krba1 protein_coding protein_coding MGP_CASTEiJ_T0077562.1 MGP_CASTEiJ_G0029790.1 mouse_genomes_project 6 46502125 46507190 + Krba1 protein_coding retained_intron MGP_CASTEiJ_T0077563.1 MGP_CASTEiJ_G0029790.1 mouse_genomes_project 6 46502127 46523152 + MGP_CASTEiJ_P0077563 Krba1 protein_coding protein_coding MGP_CASTEiJ_T0077564.1 MGP_CASTEiJ_G0029790.1 mouse_genomes_project 6 46502153 46525811 + MGP_CASTEiJ_P0077564 Krba1 protein_coding protein_coding MGP_CASTEiJ_T0077565.1 MGP_CASTEiJ_G0029790.1 mouse_genomes_project 6 46502193 46509982 + Krba1 protein_coding processed_transcript MGP_CASTEiJ_T0077566.1 MGP_CASTEiJ_G0029790.1 mouse_genomes_project 6 46502361 46523727 + MGP_CASTEiJ_P0077566 Krba1 protein_coding protein_coding MGP_CASTEiJ_T0077567.1 MGP_CASTEiJ_G0029790.1 mouse_genomes_project 6 46510557 46514785 + Krba1 protein_coding processed_transcript MGP_CASTEiJ_T0077568.1 MGP_CASTEiJ_G0029790.1 mouse_genomes_project 6 46515446 46525811 + Krba1 protein_coding retained_intron MGP_CASTEiJ_T0077569.1 MGP_CASTEiJ_G0029790.1 mouse_genomes_project 6 46519587 46526047 + Krba1 protein_coding retained_intron MGP_CASTEiJ_T0004800.1 MGP_CASTEiJ_G0004131.1 mouse_genomes_project 6 36895807 36926777 + 4930599N23Rik antisense antisense MGP_CASTEiJ_T0008459.1 MGP_CASTEiJ_G0006850.1 mouse_genomes_project 6 92086087 92093413 - 4930471M09Rik lincRNA lincRNA MGP_CASTEiJ_T0008460.1 MGP_CASTEiJ_G0006850.1 mouse_genomes_project 6 92091553 92093471 - 4930471M09Rik lincRNA lincRNA MGP_CASTEiJ_T0002069.1 MGP_CASTEiJ_G0001989.1 mouse_genomes_project 6 127207904 127208486 + TEC TEC MGP_CASTEiJ_T0008540.1 MGP_CASTEiJ_G0006913.1 mouse_genomes_project 6 145981063 146030558 - Gm31108 lincRNA lincRNA MGP_CASTEiJ_T0080931.1 MGP_CASTEiJ_G0030512.1 mouse_genomes_project 6 140770067 140792208 + MGP_CASTEiJ_P0080931 Mgst1 protein_coding protein_coding MGP_CASTEiJ_T0080932.1 MGP_CASTEiJ_G0030512.1 mouse_genomes_project 6 140770279 140792058 + MGP_CASTEiJ_P0080932 Mgst1 protein_coding protein_coding MGP_CASTEiJ_T0080933.1 MGP_CASTEiJ_G0030512.1 mouse_genomes_project 6 140770305 140791845 + MGP_CASTEiJ_P0080933 Mgst1 protein_coding protein_coding MGP_CASTEiJ_T0080934.1 MGP_CASTEiJ_G0030512.1 mouse_genomes_project 6 140770322 140792195 + MGP_CASTEiJ_P0080934 Mgst1 protein_coding protein_coding MGP_CASTEiJ_T0080935.1 MGP_CASTEiJ_G0030512.1 mouse_genomes_project 6 140770350 140791837 + MGP_CASTEiJ_P0080935 Mgst1 protein_coding protein_coding MGP_CASTEiJ_T0080936.1 MGP_CASTEiJ_G0030512.1 mouse_genomes_project 6 140771125 140792012 + MGP_CASTEiJ_P0080936 Mgst1 protein_coding protein_coding MGP_CASTEiJ_T0080937.1 MGP_CASTEiJ_G0030512.1 mouse_genomes_project 6 140771341 140792065 + MGP_CASTEiJ_P0080937 Mgst1 protein_coding protein_coding MGP_CASTEiJ_T0080938.1 MGP_CASTEiJ_G0030512.1 mouse_genomes_project 6 140772612 140781656 + MGP_CASTEiJ_P0080938 Mgst1 protein_coding protein_coding MGP_CASTEiJ_T0001857.1 MGP_CASTEiJ_G0001778.1 mouse_genomes_project 6 12651925 12653633 + TEC TEC MGP_CASTEiJ_T0000157.1 MGP_CASTEiJ_G0000120.1 mouse_genomes_project 6 67795303 67796029 + MGP_CASTEiJ_P0000157 Igkv2-112 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000158.1 MGP_CASTEiJ_G0000120.1 mouse_genomes_project 6 67795303 67796029 + MGP_CASTEiJ_P0000158 Igkv2-112 IG_V_gene IG_V_gene MGP_CASTEiJ_T0081122.1 MGP_CASTEiJ_G0030548.1 mouse_genomes_project 6 148097949 148166647 + MGP_CASTEiJ_P0081122 Lrmp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081123.1 MGP_CASTEiJ_G0030548.1 mouse_genomes_project 6 148104115 148166653 + MGP_CASTEiJ_P0081123 Lrmp protein_coding protein_coding MGP_CASTEiJ_T0081124.1 MGP_CASTEiJ_G0030548.1 mouse_genomes_project 6 148104118 148159676 + Lrmp protein_coding retained_intron MGP_CASTEiJ_T0081125.1 MGP_CASTEiJ_G0030548.1 mouse_genomes_project 6 148104157 148149670 + Lrmp protein_coding retained_intron MGP_CASTEiJ_T0081126.1 MGP_CASTEiJ_G0030548.1 mouse_genomes_project 6 148124027 148149117 + MGP_CASTEiJ_P0081126 Lrmp protein_coding protein_coding MGP_CASTEiJ_T0081127.1 MGP_CASTEiJ_G0030548.1 mouse_genomes_project 6 148131938 148145516 + Lrmp protein_coding retained_intron MGP_CASTEiJ_T0081128.1 MGP_CASTEiJ_G0030548.1 mouse_genomes_project 6 148131938 148149683 + MGP_CASTEiJ_P0081128 Lrmp protein_coding protein_coding MGP_CASTEiJ_T0081129.1 MGP_CASTEiJ_G0030548.1 mouse_genomes_project 6 148131941 148166647 + MGP_CASTEiJ_P0081129 Lrmp protein_coding protein_coding MGP_CASTEiJ_T0081130.1 MGP_CASTEiJ_G0030548.1 mouse_genomes_project 6 148144598 148162692 + Lrmp protein_coding processed_transcript MGP_CASTEiJ_T0081131.1 MGP_CASTEiJ_G0030548.1 mouse_genomes_project 6 148160496 148166396 + Lrmp protein_coding retained_intron MGP_CASTEiJ_T0008292.1 MGP_CASTEiJ_G0006731.1 mouse_genomes_project 6 4121097 4129020 + Gm19272 lincRNA lincRNA MGP_CASTEiJ_T0008293.1 MGP_CASTEiJ_G0006731.1 mouse_genomes_project 6 4121097 4125952 + Gm19272 lincRNA lincRNA MGP_CASTEiJ_T0101786.1 MGP_CASTEiJ_G0038566.1 mouse_genomes_project 6 40813314 40967333 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0002508.1 MGP_CASTEiJ_G0002417.1 mouse_genomes_project 6 39377461 39377509 + TR_J_pseudogene TR_J_pseudogene MGP_CASTEiJ_T0077763.1 MGP_CASTEiJ_G0029833.1 mouse_genomes_project 6 49829620 49898879 + MGP_CASTEiJ_P0077763 Snx10 protein_coding protein_coding MGP_CASTEiJ_T0077764.1 MGP_CASTEiJ_G0029833.1 mouse_genomes_project 6 49829701 49874372 + Snx10 protein_coding retained_intron MGP_CASTEiJ_T0077765.1 MGP_CASTEiJ_G0029833.1 mouse_genomes_project 6 49829986 49886346 + MGP_CASTEiJ_P0077765 Snx10 protein_coding protein_coding MGP_CASTEiJ_T0077766.1 MGP_CASTEiJ_G0029833.1 mouse_genomes_project 6 49830011 49894326 + MGP_CASTEiJ_P0077766 Snx10 protein_coding protein_coding MGP_CASTEiJ_T0077767.1 MGP_CASTEiJ_G0029833.1 mouse_genomes_project 6 49851504 49898870 + MGP_CASTEiJ_P0077767 Snx10 protein_coding protein_coding MGP_CASTEiJ_T0077768.1 MGP_CASTEiJ_G0029833.1 mouse_genomes_project 6 49851505 49894962 + MGP_CASTEiJ_P0077768 Snx10 protein_coding protein_coding MGP_CASTEiJ_T0077769.1 MGP_CASTEiJ_G0029833.1 mouse_genomes_project 6 49851547 49894933 + MGP_CASTEiJ_P0077769 Snx10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000271.1 MGP_CASTEiJ_G0000220.1 mouse_genomes_project 6 67698496 67698967 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0004854.1 MGP_CASTEiJ_G0004171.1 mouse_genomes_project 6 83251410 83253309 + Gm44287 antisense antisense MGP_CASTEiJ_T0076662.1 MGP_CASTEiJ_G0029580.1 mouse_genomes_project 6 19129185 19415891 + MGP_CASTEiJ_P0076662 Cped1 protein_coding protein_coding MGP_CASTEiJ_T0076663.1 MGP_CASTEiJ_G0029580.1 mouse_genomes_project 6 19129213 19155460 + Cped1 protein_coding processed_transcript MGP_CASTEiJ_T0076664.1 MGP_CASTEiJ_G0029580.1 mouse_genomes_project 6 19129213 19284052 + MGP_CASTEiJ_P0076664 Cped1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076665.1 MGP_CASTEiJ_G0029580.1 mouse_genomes_project 6 19129863 19283080 + MGP_CASTEiJ_P0076665 Cped1 protein_coding protein_coding MGP_CASTEiJ_T0076666.1 MGP_CASTEiJ_G0029580.1 mouse_genomes_project 6 19130160 19219950 + Cped1 protein_coding processed_transcript MGP_CASTEiJ_T0076667.1 MGP_CASTEiJ_G0029580.1 mouse_genomes_project 6 19163606 19399466 + MGP_CASTEiJ_P0076667 Cped1 protein_coding protein_coding MGP_CASTEiJ_T0076668.1 MGP_CASTEiJ_G0029580.1 mouse_genomes_project 6 19173432 19238459 + Cped1 protein_coding processed_transcript MGP_CASTEiJ_T0076669.1 MGP_CASTEiJ_G0029580.1 mouse_genomes_project 6 19287872 19300967 + Cped1 protein_coding retained_intron MGP_CASTEiJ_T0014885.1 MGP_CASTEiJ_G0013048.1 mouse_genomes_project 6 70904986 70905385 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008295.1 MGP_CASTEiJ_G0006733.1 mouse_genomes_project 6 7723798 7787995 + Gm44004 lincRNA lincRNA MGP_CASTEiJ_T0080713.1 MGP_CASTEiJ_G0030451.1 mouse_genomes_project 6 134166348 134167257 - MGP_CASTEiJ_P0080713 Tas2r104 protein_coding protein_coding MGP_CASTEiJ_T0078384.1 MGP_CASTEiJ_G0029988.1 mouse_genomes_project 6 79965095 80809143 + MGP_CASTEiJ_P0078384 Lrrtm4 protein_coding protein_coding MGP_CASTEiJ_T0078385.1 MGP_CASTEiJ_G0029988.1 mouse_genomes_project 6 79965106 79968154 + MGP_CASTEiJ_P0078385 Lrrtm4 protein_coding protein_coding MGP_CASTEiJ_T0078386.1 MGP_CASTEiJ_G0029988.1 mouse_genomes_project 6 79965136 79971321 + MGP_CASTEiJ_P0078386 Lrrtm4 protein_coding protein_coding MGP_CASTEiJ_T0078387.1 MGP_CASTEiJ_G0029988.1 mouse_genomes_project 6 79965136 80808321 + MGP_CASTEiJ_P0078387 Lrrtm4 protein_coding protein_coding MGP_CASTEiJ_T0078388.1 MGP_CASTEiJ_G0029988.1 mouse_genomes_project 6 79965229 80809141 + MGP_CASTEiJ_P0078388 Lrrtm4 protein_coding protein_coding MGP_CASTEiJ_T0078389.1 MGP_CASTEiJ_G0029988.1 mouse_genomes_project 6 79965266 79972307 + MGP_CASTEiJ_P0078389 Lrrtm4 protein_coding protein_coding MGP_CASTEiJ_T0078390.1 MGP_CASTEiJ_G0029988.1 mouse_genomes_project 6 79965558 79968321 + MGP_CASTEiJ_P0078390 Lrrtm4 protein_coding protein_coding MGP_CASTEiJ_T0078391.1 MGP_CASTEiJ_G0029988.1 mouse_genomes_project 6 79965859 79971329 + MGP_CASTEiJ_P0078391 Lrrtm4 protein_coding protein_coding MGP_CASTEiJ_T0101184.1 MGP_CASTEiJ_G0038097.1 mouse_genomes_project 6 72856733 72856929 - Gm24533 snoRNA snoRNA MGP_CASTEiJ_T0014738.1 MGP_CASTEiJ_G0012901.1 mouse_genomes_project 6 15096142 15097149 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102383.1 MGP_CASTEiJ_G0039108.1 mouse_genomes_project 6 40633462 40633526 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000181.1 MGP_CASTEiJ_G0000137.1 mouse_genomes_project 6 68520190 68520653 + MGP_CASTEiJ_P0000181 Igkv13-84 IG_V_gene IG_V_gene MGP_CASTEiJ_T0014916.1 MGP_CASTEiJ_G0013079.1 mouse_genomes_project 6 83986402 83986780 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008425.1 MGP_CASTEiJ_G0006827.1 mouse_genomes_project 6 82054843 82063270 + lincRNA lincRNA MGP_CASTEiJ_T0008427.1 MGP_CASTEiJ_G0006827.1 mouse_genomes_project 6 82062314 82063851 + lincRNA lincRNA MGP_CASTEiJ_T0079553.1 MGP_CASTEiJ_G0030212.1 mouse_genomes_project 6 114973922 114987598 + MGP_CASTEiJ_P0079553 Il17re protein_coding protein_coding MGP_CASTEiJ_T0079554.1 MGP_CASTEiJ_G0030212.1 mouse_genomes_project 6 114974201 114976307 + Il17re protein_coding retained_intron MGP_CASTEiJ_T0079555.1 MGP_CASTEiJ_G0030212.1 mouse_genomes_project 6 114974247 114986847 + MGP_CASTEiJ_P0079555 Il17re protein_coding protein_coding MGP_CASTEiJ_T0079556.1 MGP_CASTEiJ_G0030212.1 mouse_genomes_project 6 114974274 114986808 + MGP_CASTEiJ_P0079556 Il17re protein_coding protein_coding MGP_CASTEiJ_T0079557.1 MGP_CASTEiJ_G0030212.1 mouse_genomes_project 6 114974335 114986576 + MGP_CASTEiJ_P0079557 Il17re protein_coding protein_coding MGP_CASTEiJ_T0079558.1 MGP_CASTEiJ_G0030212.1 mouse_genomes_project 6 114974335 114986576 + MGP_CASTEiJ_P0079558 Il17re protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079559.1 MGP_CASTEiJ_G0030212.1 mouse_genomes_project 6 114980202 114987596 + Il17re protein_coding retained_intron MGP_CASTEiJ_T0079560.1 MGP_CASTEiJ_G0030212.1 mouse_genomes_project 6 114981749 114986420 + Il17re protein_coding retained_intron MGP_CASTEiJ_T0079137.1 MGP_CASTEiJ_G0030135.1 mouse_genomes_project 6 92140119 92166448 - MGP_CASTEiJ_P0079137 Xpc protein_coding protein_coding MGP_CASTEiJ_T0079138.1 MGP_CASTEiJ_G0030135.1 mouse_genomes_project 6 92143090 92166355 - MGP_CASTEiJ_P0079138 Xpc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079139.1 MGP_CASTEiJ_G0030135.1 mouse_genomes_project 6 92157509 92166444 - MGP_CASTEiJ_P0079139 Xpc protein_coding protein_coding MGP_CASTEiJ_T0102423.1 MGP_CASTEiJ_G0039148.1 mouse_genomes_project 6 131464222 131466132 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0080615.1 MGP_CASTEiJ_G0030418.1 mouse_genomes_project 6 131305028 131353856 - MGP_CASTEiJ_P0080615 BC035044 protein_coding protein_coding MGP_CASTEiJ_T0078853.1 MGP_CASTEiJ_G0030075.1 mouse_genomes_project 6 87553468 87562266 + MGP_CASTEiJ_P0078853 D6Ertd527e protein_coding protein_coding MGP_CASTEiJ_T0078854.1 MGP_CASTEiJ_G0030075.1 mouse_genomes_project 6 87553470 87562320 + MGP_CASTEiJ_P0078854 D6Ertd527e protein_coding protein_coding MGP_CASTEiJ_T0078855.1 MGP_CASTEiJ_G0030075.1 mouse_genomes_project 6 87553470 87562319 + MGP_CASTEiJ_P0078855 D6Ertd527e protein_coding protein_coding MGP_CASTEiJ_T0078856.1 MGP_CASTEiJ_G0030075.1 mouse_genomes_project 6 87553504 87560736 + D6Ertd527e protein_coding processed_transcript MGP_CASTEiJ_T0078857.1 MGP_CASTEiJ_G0030075.1 mouse_genomes_project 6 87553535 87560728 + D6Ertd527e protein_coding processed_transcript MGP_CASTEiJ_T0076501.1 MGP_CASTEiJ_G0029554.1 mouse_genomes_project 6 9085493 9521214 - MGP_CASTEiJ_P0076501 Thsd7a protein_coding protein_coding MGP_CASTEiJ_T0076502.1 MGP_CASTEiJ_G0029554.1 mouse_genomes_project 6 9094042 9521371 - MGP_CASTEiJ_P0076502 Thsd7a protein_coding protein_coding MGP_CASTEiJ_T0076503.1 MGP_CASTEiJ_G0029554.1 mouse_genomes_project 6 9094082 9095283 - Thsd7a protein_coding retained_intron MGP_CASTEiJ_T0076504.1 MGP_CASTEiJ_G0029554.1 mouse_genomes_project 6 9094304 9195017 - Thsd7a protein_coding processed_transcript MGP_CASTEiJ_T0076505.1 MGP_CASTEiJ_G0029554.1 mouse_genomes_project 6 9098044 9101941 - Thsd7a protein_coding retained_intron MGP_CASTEiJ_T0076506.1 MGP_CASTEiJ_G0029554.1 mouse_genomes_project 6 9236231 9334703 - Thsd7a protein_coding processed_transcript MGP_CASTEiJ_T0078127.1 MGP_CASTEiJ_G0029932.1 mouse_genomes_project 6 66405922 66410786 - MGP_CASTEiJ_P0078127 Gadd45a protein_coding unknown_likely_coding MGP_CASTEiJ_T0078128.1 MGP_CASTEiJ_G0029932.1 mouse_genomes_project 6 66408739 66411048 - MGP_CASTEiJ_P0078128 Gadd45a protein_coding protein_coding MGP_CASTEiJ_T0078129.1 MGP_CASTEiJ_G0029932.1 mouse_genomes_project 6 66409100 66410843 - Gadd45a protein_coding retained_intron MGP_CASTEiJ_T0078130.1 MGP_CASTEiJ_G0029932.1 mouse_genomes_project 6 66409100 66411006 - MGP_CASTEiJ_P0078130 Gadd45a protein_coding protein_coding MGP_CASTEiJ_T0078131.1 MGP_CASTEiJ_G0029932.1 mouse_genomes_project 6 66409107 66410893 - MGP_CASTEiJ_P0078131 Gadd45a protein_coding protein_coding MGP_CASTEiJ_T0078132.1 MGP_CASTEiJ_G0029932.1 mouse_genomes_project 6 66409220 66410828 - Gadd45a protein_coding retained_intron MGP_CASTEiJ_T0078133.1 MGP_CASTEiJ_G0029932.1 mouse_genomes_project 6 66410013 66411019 - Gadd45a protein_coding retained_intron MGP_CASTEiJ_T0078134.1 MGP_CASTEiJ_G0029932.1 mouse_genomes_project 6 66410539 66411099 - Gadd45a protein_coding retained_intron MGP_CASTEiJ_T0014987.1 MGP_CASTEiJ_G0013150.1 mouse_genomes_project 6 114455055 114455226 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102372.1 MGP_CASTEiJ_G0039097.1 mouse_genomes_project 6 31892782 31901419 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002019.1 MGP_CASTEiJ_G0001940.1 mouse_genomes_project 6 92689832 92691729 + TEC TEC MGP_CASTEiJ_T0014776.1 MGP_CASTEiJ_G0012939.1 mouse_genomes_project 6 38403676 38404086 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014759.1 MGP_CASTEiJ_G0012922.1 mouse_genomes_project 6 27303567 27303774 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002082.1 MGP_CASTEiJ_G0002002.1 mouse_genomes_project 6 132040621 132041303 + TEC TEC MGP_CASTEiJ_T0001893.1 MGP_CASTEiJ_G0001814.1 mouse_genomes_project 6 43025109 43026350 + TEC TEC MGP_CASTEiJ_T0014918.1 MGP_CASTEiJ_G0013081.1 mouse_genomes_project 6 84091636 84092000 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076432.1 MGP_CASTEiJ_G0029539.1 mouse_genomes_project 6 3797746 3857778 + MGP_CASTEiJ_P0076432 Sdhaf3 protein_coding protein_coding MGP_CASTEiJ_T0076433.1 MGP_CASTEiJ_G0029539.1 mouse_genomes_project 6 3797749 3811607 + Sdhaf3 protein_coding processed_transcript MGP_CASTEiJ_T0077588.1 MGP_CASTEiJ_G0029793.1 mouse_genomes_project 6 46644924 46649137 + MGP_CASTEiJ_P0077588 Atp6v0e2 protein_coding protein_coding MGP_CASTEiJ_T0077589.1 MGP_CASTEiJ_G0029793.1 mouse_genomes_project 6 46644947 46647198 + Atp6v0e2 protein_coding retained_intron MGP_CASTEiJ_T0077590.1 MGP_CASTEiJ_G0029793.1 mouse_genomes_project 6 46644974 46649137 + MGP_CASTEiJ_P0077590 Atp6v0e2 protein_coding protein_coding MGP_CASTEiJ_T0002009.1 MGP_CASTEiJ_G0001930.1 mouse_genomes_project 6 91129770 91130283 + TEC TEC MGP_CASTEiJ_T0080168.1 MGP_CASTEiJ_G0030324.1 mouse_genomes_project 6 124886526 124896533 + MGP_CASTEiJ_P0080168 Clec4a3 protein_coding protein_coding MGP_CASTEiJ_T0080169.1 MGP_CASTEiJ_G0030324.1 mouse_genomes_project 6 124886655 124896532 + MGP_CASTEiJ_P0080169 Clec4a3 protein_coding protein_coding MGP_CASTEiJ_T0080170.1 MGP_CASTEiJ_G0030324.1 mouse_genomes_project 6 124886789 124893642 + MGP_CASTEiJ_P0080170 Clec4a3 protein_coding protein_coding MGP_CASTEiJ_T0099968.1 MGP_CASTEiJ_G0036881.1 mouse_genomes_project 6 104012136 104012244 + Gm26022 snRNA snRNA MGP_CASTEiJ_T0098635.1 MGP_CASTEiJ_G0035566.1 mouse_genomes_project 6 134997813 134997934 + n-R5s166 rRNA rRNA MGP_CASTEiJ_T0079390.1 MGP_CASTEiJ_G0030184.1 mouse_genomes_project 6 108844364 108886979 + MGP_CASTEiJ_P0079390 Lrrn1 protein_coding protein_coding MGP_CASTEiJ_T0004919.1 MGP_CASTEiJ_G0004208.1 mouse_genomes_project 6 113753023 113756083 - 5031434C07Rik antisense antisense MGP_CASTEiJ_T0004920.1 MGP_CASTEiJ_G0004208.1 mouse_genomes_project 6 113753235 113756084 - 5031434C07Rik antisense antisense MGP_CASTEiJ_T0080730.1 MGP_CASTEiJ_G0030467.1 mouse_genomes_project 6 135378223 135379225 - MGP_CASTEiJ_P0080730 Tas2r110 protein_coding protein_coding MGP_CASTEiJ_T0078160.1 MGP_CASTEiJ_G0029938.1 mouse_genomes_project 6 70359405 70421865 + MGP_CASTEiJ_P0078160 Eif2ak3 protein_coding protein_coding MGP_CASTEiJ_T0078161.1 MGP_CASTEiJ_G0029938.1 mouse_genomes_project 6 70359443 70379632 + MGP_CASTEiJ_P0078161 Eif2ak3 protein_coding protein_coding MGP_CASTEiJ_T0078162.1 MGP_CASTEiJ_G0029938.1 mouse_genomes_project 6 70359446 70360533 + Eif2ak3 protein_coding retained_intron MGP_CASTEiJ_T0078163.1 MGP_CASTEiJ_G0029938.1 mouse_genomes_project 6 70393397 70408150 + Eif2ak3 protein_coding retained_intron MGP_CASTEiJ_T0078164.1 MGP_CASTEiJ_G0029938.1 mouse_genomes_project 6 70411464 70417793 + Eif2ak3 protein_coding retained_intron MGP_CASTEiJ_T0099989.1 MGP_CASTEiJ_G0036902.1 mouse_genomes_project 6 152199593 152199700 - Gm22578 snRNA snRNA MGP_CASTEiJ_T0010512.1 MGP_CASTEiJ_G0008700.1 mouse_genomes_project 6 131422014 131422069 - Gm27336 miRNA miRNA MGP_CASTEiJ_T0014929.1 MGP_CASTEiJ_G0013092.1 mouse_genomes_project 6 86302147 86302924 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000262.1 MGP_CASTEiJ_G0000211.1 mouse_genomes_project 6 67116876 67434673 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0080326.1 MGP_CASTEiJ_G0030358.1 mouse_genomes_project 6 127017436 127028067 - MGP_CASTEiJ_P0080326 Lag3 protein_coding protein_coding MGP_CASTEiJ_T0080327.1 MGP_CASTEiJ_G0030358.1 mouse_genomes_project 6 127022978 127024423 - Lag3 protein_coding processed_transcript MGP_CASTEiJ_T0080069.1 MGP_CASTEiJ_G0030301.1 mouse_genomes_project 6 123057172 123078142 + MGP_CASTEiJ_P0080069 Tuba8 protein_coding protein_coding MGP_CASTEiJ_T0080762.1 MGP_CASTEiJ_G0030480.1 mouse_genomes_project 6 137039870 137127702 - MGP_CASTEiJ_P0080762 Dusp16 protein_coding protein_coding MGP_CASTEiJ_T0080763.1 MGP_CASTEiJ_G0030480.1 mouse_genomes_project 6 137039875 137127852 - MGP_CASTEiJ_P0080763 Dusp16 protein_coding protein_coding MGP_CASTEiJ_T0080764.1 MGP_CASTEiJ_G0030480.1 mouse_genomes_project 6 137042238 137090558 - MGP_CASTEiJ_P0080764 Dusp16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080765.1 MGP_CASTEiJ_G0030480.1 mouse_genomes_project 6 137043193 137050462 - Dusp16 protein_coding retained_intron MGP_CASTEiJ_T0080766.1 MGP_CASTEiJ_G0030480.1 mouse_genomes_project 6 137043345 137071930 - Dusp16 protein_coding processed_transcript MGP_CASTEiJ_T0080767.1 MGP_CASTEiJ_G0030480.1 mouse_genomes_project 6 137045000 137088351 - MGP_CASTEiJ_P0080767 Dusp16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080768.1 MGP_CASTEiJ_G0030480.1 mouse_genomes_project 6 137064527 137126557 - MGP_CASTEiJ_P0080768 Dusp16 protein_coding protein_coding MGP_CASTEiJ_T0000290.1 MGP_CASTEiJ_G0000239.1 mouse_genomes_project 6 69212389 69212784 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0079131.1 MGP_CASTEiJ_G0030133.1 mouse_genomes_project 6 92122353 92124199 - protein_coding retained_intron MGP_CASTEiJ_T0015085.1 MGP_CASTEiJ_G0013248.1 mouse_genomes_project 6 142870172 142870614 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079176.1 MGP_CASTEiJ_G0030141.1 mouse_genomes_project 6 92658319 92765633 + MGP_CASTEiJ_P0079176 Fgd5 protein_coding protein_coding MGP_CASTEiJ_T0079177.1 MGP_CASTEiJ_G0030141.1 mouse_genomes_project 6 92669318 92765633 + MGP_CASTEiJ_P0079177 Fgd5 protein_coding protein_coding MGP_CASTEiJ_T0079178.1 MGP_CASTEiJ_G0030141.1 mouse_genomes_project 6 92757013 92765633 + Fgd5 protein_coding retained_intron MGP_CASTEiJ_T0079179.1 MGP_CASTEiJ_G0030141.1 mouse_genomes_project 6 92760796 92763840 + Fgd5 protein_coding retained_intron MGP_CASTEiJ_T0099939.1 MGP_CASTEiJ_G0036852.1 mouse_genomes_project 6 18243781 18243884 + Gm26373 snRNA snRNA MGP_CASTEiJ_T0078654.1 MGP_CASTEiJ_G0030036.1 mouse_genomes_project 6 85428918 85434140 + MGP_CASTEiJ_P0078654 Spr protein_coding protein_coding MGP_CASTEiJ_T0078655.1 MGP_CASTEiJ_G0030036.1 mouse_genomes_project 6 85428918 85462220 + MGP_CASTEiJ_P0078655 Spr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078656.1 MGP_CASTEiJ_G0030036.1 mouse_genomes_project 6 85428922 85433818 + MGP_CASTEiJ_P0078656 Spr protein_coding protein_coding MGP_CASTEiJ_T0078657.1 MGP_CASTEiJ_G0030036.1 mouse_genomes_project 6 85428928 85434131 + MGP_CASTEiJ_P0078657 Spr protein_coding protein_coding MGP_CASTEiJ_T0077510.1 MGP_CASTEiJ_G0029780.1 mouse_genomes_project 6 45620483 45663173 + MGP_CASTEiJ_P0077510 Cul1 protein_coding protein_coding MGP_CASTEiJ_T0077511.1 MGP_CASTEiJ_G0029780.1 mouse_genomes_project 6 45620577 45651025 + MGP_CASTEiJ_P0077511 Cul1 protein_coding protein_coding MGP_CASTEiJ_T0077512.1 MGP_CASTEiJ_G0029780.1 mouse_genomes_project 6 45620989 45692042 + MGP_CASTEiJ_P0077512 Cul1 protein_coding protein_coding MGP_CASTEiJ_T0077513.1 MGP_CASTEiJ_G0029780.1 mouse_genomes_project 6 45621405 45694415 + MGP_CASTEiJ_P0077513 Cul1 protein_coding protein_coding MGP_CASTEiJ_T0077514.1 MGP_CASTEiJ_G0029780.1 mouse_genomes_project 6 45621473 45651237 + MGP_CASTEiJ_P0077514 Cul1 protein_coding protein_coding MGP_CASTEiJ_T0077515.1 MGP_CASTEiJ_G0029780.1 mouse_genomes_project 6 45683081 45694334 + Cul1 protein_coding processed_transcript MGP_CASTEiJ_T0077516.1 MGP_CASTEiJ_G0029780.1 mouse_genomes_project 6 45685266 45688053 + Cul1 protein_coding retained_intron MGP_CASTEiJ_T0077517.1 MGP_CASTEiJ_G0029780.1 mouse_genomes_project 6 45687969 45691557 + Cul1 protein_coding retained_intron MGP_CASTEiJ_T0077518.1 MGP_CASTEiJ_G0029780.1 mouse_genomes_project 6 45691839 45694055 + Cul1 protein_coding processed_transcript MGP_CASTEiJ_T0101193.1 MGP_CASTEiJ_G0038106.1 mouse_genomes_project 6 98042392 98042524 - Gm26175 snoRNA snoRNA MGP_CASTEiJ_T0078165.1 MGP_CASTEiJ_G0029939.1 mouse_genomes_project 6 70429616 70435389 - MGP_CASTEiJ_P0078165 Tex37 protein_coding protein_coding MGP_CASTEiJ_T0004828.1 MGP_CASTEiJ_G0004150.1 mouse_genomes_project 6 52600101 52604143 - 9530036M11Rik antisense antisense MGP_CASTEiJ_T0080574.1 MGP_CASTEiJ_G0030408.1 mouse_genomes_project 6 130791578 130800224 + MGP_CASTEiJ_P0080574 protein_coding protein_coding MGP_CASTEiJ_T0080575.1 MGP_CASTEiJ_G0030408.1 mouse_genomes_project 6 130791590 130800117 + MGP_CASTEiJ_P0080575 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080576.1 MGP_CASTEiJ_G0030408.1 mouse_genomes_project 6 130792048 130800930 + MGP_CASTEiJ_P0080576 protein_coding protein_coding MGP_CASTEiJ_T0080577.1 MGP_CASTEiJ_G0030408.1 mouse_genomes_project 6 130792247 130800930 + MGP_CASTEiJ_P0080577 protein_coding protein_coding MGP_CASTEiJ_T0080578.1 MGP_CASTEiJ_G0030408.1 mouse_genomes_project 6 130792325 130800930 + protein_coding retained_intron MGP_CASTEiJ_T0080579.1 MGP_CASTEiJ_G0030408.1 mouse_genomes_project 6 130792570 130810118 + MGP_CASTEiJ_P0080579 protein_coding non_stop_decay MGP_CASTEiJ_T0015055.1 MGP_CASTEiJ_G0013218.1 mouse_genomes_project 6 132387600 132387712 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001953.1 MGP_CASTEiJ_G0001874.1 mouse_genomes_project 6 77314057 77318181 - TEC TEC MGP_CASTEiJ_T0008324.1 MGP_CASTEiJ_G0006753.1 mouse_genomes_project 6 28488634 28617057 - Lncpint lincRNA lincRNA MGP_CASTEiJ_T0008326.1 MGP_CASTEiJ_G0006753.1 mouse_genomes_project 6 28560533 28617016 - Lncpint lincRNA lincRNA MGP_CASTEiJ_T0008327.1 MGP_CASTEiJ_G0006753.1 mouse_genomes_project 6 28561508 28617003 - Lncpint lincRNA lincRNA MGP_CASTEiJ_T0008328.1 MGP_CASTEiJ_G0006753.1 mouse_genomes_project 6 28561556 28616929 - Lncpint lincRNA lincRNA MGP_CASTEiJ_T0008317.1 MGP_CASTEiJ_G0006748.1 mouse_genomes_project 6 27678036 27707184 + 1700095J07Rik lincRNA lincRNA MGP_CASTEiJ_T0008318.1 MGP_CASTEiJ_G0006748.1 mouse_genomes_project 6 27678052 27681154 + 1700095J07Rik lincRNA lincRNA MGP_CASTEiJ_T0002640.1 MGP_CASTEiJ_G0002530.1 mouse_genomes_project 6 39101238 39101530 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0001971.1 MGP_CASTEiJ_G0001892.1 mouse_genomes_project 6 83109353 83110820 + TEC TEC MGP_CASTEiJ_T0014854.1 MGP_CASTEiJ_G0013017.1 mouse_genomes_project 6 64591781 64592976 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001874.1 MGP_CASTEiJ_G0001795.1 mouse_genomes_project 6 26046276 26049517 + TEC TEC MGP_CASTEiJ_T0001975.1 MGP_CASTEiJ_G0001896.1 mouse_genomes_project 6 84064254 84066481 + TEC TEC MGP_CASTEiJ_T0079682.1 MGP_CASTEiJ_G0030234.1 mouse_genomes_project 6 116733269 116743570 - MGP_CASTEiJ_P0079682 Timp4 protein_coding protein_coding MGP_CASTEiJ_T0079683.1 MGP_CASTEiJ_G0030234.1 mouse_genomes_project 6 116738224 116743223 - MGP_CASTEiJ_P0079683 Timp4 protein_coding protein_coding MGP_CASTEiJ_T0076846.1 MGP_CASTEiJ_G0029622.1 mouse_genomes_project 6 26771425 26774129 + MGP_CASTEiJ_P0076846 Atp6v1f protein_coding protein_coding MGP_CASTEiJ_T0076847.1 MGP_CASTEiJ_G0029622.1 mouse_genomes_project 6 26771775 26774129 + MGP_CASTEiJ_P0076847 Atp6v1f protein_coding protein_coding MGP_CASTEiJ_T0076848.1 MGP_CASTEiJ_G0029622.1 mouse_genomes_project 6 26771775 26774129 + MGP_CASTEiJ_P0076848 Atp6v1f protein_coding protein_coding MGP_CASTEiJ_T0014947.1 MGP_CASTEiJ_G0013110.1 mouse_genomes_project 6 95691727 95692715 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014956.1 MGP_CASTEiJ_G0013119.1 mouse_genomes_project 6 99817710 99818186 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014827.1 MGP_CASTEiJ_G0012990.1 mouse_genomes_project 6 56570795 56571233 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078574.1 MGP_CASTEiJ_G0030023.1 mouse_genomes_project 6 83823417 83836542 - MGP_CASTEiJ_P0078574 Clec4f protein_coding protein_coding MGP_CASTEiJ_T0078575.1 MGP_CASTEiJ_G0030023.1 mouse_genomes_project 6 83824093 83836476 - Clec4f protein_coding processed_transcript MGP_CASTEiJ_T0014808.1 MGP_CASTEiJ_G0012971.1 mouse_genomes_project 6 47433353 47433917 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014908.1 MGP_CASTEiJ_G0013071.1 mouse_genomes_project 6 81917876 81918579 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077444.1 MGP_CASTEiJ_G0029750.1 mouse_genomes_project 6 40263845 40264727 + MGP_CASTEiJ_P0077444 Tas2r143 protein_coding protein_coding MGP_CASTEiJ_T0008504.1 MGP_CASTEiJ_G0006887.1 mouse_genomes_project 6 124273386 124274690 + 1700063H04Rik lincRNA lincRNA MGP_CASTEiJ_T0014984.1 MGP_CASTEiJ_G0013147.1 mouse_genomes_project 6 111745683 111746258 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001872.1 MGP_CASTEiJ_G0001793.1 mouse_genomes_project 6 25812649 25814521 + TEC TEC MGP_CASTEiJ_T0081019.1 MGP_CASTEiJ_G0030530.1 mouse_genomes_project 6 144928771 145014106 - MGP_CASTEiJ_P0081019 Slco1a6 protein_coding protein_coding MGP_CASTEiJ_T0081020.1 MGP_CASTEiJ_G0030530.1 mouse_genomes_project 6 144953356 145014102 - Slco1a6 protein_coding retained_intron MGP_CASTEiJ_T0081021.1 MGP_CASTEiJ_G0030530.1 mouse_genomes_project 6 144997234 145022155 - MGP_CASTEiJ_P0081021 Slco1a6 protein_coding protein_coding MGP_CASTEiJ_T0076876.1 MGP_CASTEiJ_G0029627.1 mouse_genomes_project 6 27020160 27044827 + MGP_CASTEiJ_P0076876 Tspan33 protein_coding protein_coding MGP_CASTEiJ_T0076877.1 MGP_CASTEiJ_G0029627.1 mouse_genomes_project 6 27020172 27044825 + MGP_CASTEiJ_P0076877 Tspan33 protein_coding protein_coding MGP_CASTEiJ_T0076878.1 MGP_CASTEiJ_G0029627.1 mouse_genomes_project 6 27020278 27044832 + MGP_CASTEiJ_P0076878 Tspan33 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076879.1 MGP_CASTEiJ_G0029627.1 mouse_genomes_project 6 27034357 27041158 + Tspan33 protein_coding retained_intron MGP_CASTEiJ_T0008509.1 MGP_CASTEiJ_G0006892.1 mouse_genomes_project 6 128533848 128537629 + Gm29009 lincRNA lincRNA MGP_CASTEiJ_T0080016.1 MGP_CASTEiJ_G0030291.1 mouse_genomes_project 6 122250535 122275431 + Il17ra protein_coding retained_intron MGP_CASTEiJ_T0080017.1 MGP_CASTEiJ_G0030291.1 mouse_genomes_project 6 122250535 122280040 + MGP_CASTEiJ_P0080017 Il17ra protein_coding protein_coding MGP_CASTEiJ_T0080018.1 MGP_CASTEiJ_G0030291.1 mouse_genomes_project 6 122265275 122271711 + Il17ra protein_coding processed_transcript MGP_CASTEiJ_T0101190.1 MGP_CASTEiJ_G0038103.1 mouse_genomes_project 6 94087214 94087345 - Gm25094 snoRNA snoRNA MGP_CASTEiJ_T0015033.1 MGP_CASTEiJ_G0013196.1 mouse_genomes_project 6 127349014 127349340 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079720.1 MGP_CASTEiJ_G0030242.1 mouse_genomes_project 6 117335799 117339047 - MGP_CASTEiJ_P0079720 Rpl32 protein_coding protein_coding MGP_CASTEiJ_T0079721.1 MGP_CASTEiJ_G0030242.1 mouse_genomes_project 6 117335806 117338648 - MGP_CASTEiJ_P0079721 Rpl32 protein_coding protein_coding MGP_CASTEiJ_T0010479.1 MGP_CASTEiJ_G0008667.1 mouse_genomes_project 6 83219760 83219837 - Mir3470a miRNA miRNA MGP_CASTEiJ_T0014922.1 MGP_CASTEiJ_G0013085.1 mouse_genomes_project 6 85365578 85366323 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0076434.1 MGP_CASTEiJ_G0029540.1 mouse_genomes_project 6 4362355 4371434 + MGP_CASTEiJ_P0076434 Tac1 protein_coding protein_coding MGP_CASTEiJ_T0076435.1 MGP_CASTEiJ_G0029540.1 mouse_genomes_project 6 4362521 4371428 + MGP_CASTEiJ_P0076435 Tac1 protein_coding protein_coding MGP_CASTEiJ_T0076436.1 MGP_CASTEiJ_G0029540.1 mouse_genomes_project 6 4362543 4371152 + MGP_CASTEiJ_P0076436 Tac1 protein_coding protein_coding MGP_CASTEiJ_T0076437.1 MGP_CASTEiJ_G0029540.1 mouse_genomes_project 6 4370819 4374291 + Tac1 protein_coding processed_transcript MGP_CASTEiJ_T0008441.1 MGP_CASTEiJ_G0006837.1 mouse_genomes_project 6 87113151 87113777 - Gm44214 lincRNA lincRNA MGP_CASTEiJ_T0014911.1 MGP_CASTEiJ_G0013074.1 mouse_genomes_project 6 83068612 83068963 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004769.1 MGP_CASTEiJ_G0004108.1 mouse_genomes_project 6 13962630 14069774 - Gm4876 antisense antisense MGP_CASTEiJ_T0004770.1 MGP_CASTEiJ_G0004108.1 mouse_genomes_project 6 13973881 14070118 - Gm4876 antisense antisense MGP_CASTEiJ_T0004771.1 MGP_CASTEiJ_G0004108.1 mouse_genomes_project 6 13994754 14069750 - Gm4876 antisense antisense MGP_CASTEiJ_T0004772.1 MGP_CASTEiJ_G0004108.1 mouse_genomes_project 6 14008969 14069902 - Gm4876 antisense antisense MGP_CASTEiJ_T0004773.1 MGP_CASTEiJ_G0004108.1 mouse_genomes_project 6 14057248 14070031 - Gm4876 antisense antisense MGP_CASTEiJ_T0004774.1 MGP_CASTEiJ_G0004108.1 mouse_genomes_project 6 14069673 14070095 - Gm4876 antisense antisense MGP_CASTEiJ_T0014754.1 MGP_CASTEiJ_G0012917.1 mouse_genomes_project 6 23130861 23131192 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080150.1 MGP_CASTEiJ_G0030318.1 mouse_genomes_project 6 124533540 124537283 + MGP_CASTEiJ_P0080150 Dppa3 protein_coding protein_coding MGP_CASTEiJ_T0101186.1 MGP_CASTEiJ_G0038099.1 mouse_genomes_project 6 81865079 81865197 + Gm22530 snoRNA snoRNA MGP_CASTEiJ_T0081173.1 MGP_CASTEiJ_G0030557.1 mouse_genomes_project 6 149113378 149530054 - MGP_CASTEiJ_P0081173 Itpr2 protein_coding protein_coding MGP_CASTEiJ_T0081174.1 MGP_CASTEiJ_G0030557.1 mouse_genomes_project 6 149113383 149529754 - MGP_CASTEiJ_P0081174 Itpr2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0081175.1 MGP_CASTEiJ_G0030557.1 mouse_genomes_project 6 149116562 149529788 - MGP_CASTEiJ_P0081175 Itpr2 protein_coding protein_coding MGP_CASTEiJ_T0081176.1 MGP_CASTEiJ_G0030557.1 mouse_genomes_project 6 149125980 149155974 - Itpr2 protein_coding processed_transcript MGP_CASTEiJ_T0081177.1 MGP_CASTEiJ_G0030557.1 mouse_genomes_project 6 149192922 149243044 - MGP_CASTEiJ_P0081177 Itpr2 protein_coding protein_coding MGP_CASTEiJ_T0081178.1 MGP_CASTEiJ_G0030557.1 mouse_genomes_project 6 149192997 149209547 - Itpr2 protein_coding processed_transcript MGP_CASTEiJ_T0081179.1 MGP_CASTEiJ_G0030557.1 mouse_genomes_project 6 149246572 149248073 - Itpr2 protein_coding retained_intron MGP_CASTEiJ_T0081180.1 MGP_CASTEiJ_G0030557.1 mouse_genomes_project 6 149301721 149305572 - Itpr2 protein_coding retained_intron MGP_CASTEiJ_T0081181.1 MGP_CASTEiJ_G0030557.1 mouse_genomes_project 6 149376609 149417034 - MGP_CASTEiJ_P0081181 Itpr2 protein_coding protein_coding MGP_CASTEiJ_T0081182.1 MGP_CASTEiJ_G0030557.1 mouse_genomes_project 6 149393319 149530099 - MGP_CASTEiJ_P0081182 Itpr2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081183.1 MGP_CASTEiJ_G0030557.1 mouse_genomes_project 6 149400322 149530054 - Itpr2 protein_coding retained_intron MGP_CASTEiJ_T0081184.1 MGP_CASTEiJ_G0030557.1 mouse_genomes_project 6 149438936 149529754 - Itpr2 protein_coding processed_transcript MGP_CASTEiJ_T0014881.1 MGP_CASTEiJ_G0013044.1 mouse_genomes_project 6 67833194 67833919 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001932.1 MGP_CASTEiJ_G0001853.1 mouse_genomes_project 6 70398257 70400704 - TEC TEC MGP_CASTEiJ_T0079385.1 MGP_CASTEiJ_G0030183.1 mouse_genomes_project 6 108089953 108109861 - MGP_CASTEiJ_P0079385 Crbn protein_coding protein_coding MGP_CASTEiJ_T0079386.1 MGP_CASTEiJ_G0030183.1 mouse_genomes_project 6 108089953 108109852 - MGP_CASTEiJ_P0079386 Crbn protein_coding protein_coding MGP_CASTEiJ_T0079387.1 MGP_CASTEiJ_G0030183.1 mouse_genomes_project 6 108093182 108108819 - MGP_CASTEiJ_P0079387 Crbn protein_coding protein_coding MGP_CASTEiJ_T0079388.1 MGP_CASTEiJ_G0030183.1 mouse_genomes_project 6 108098433 108109848 - Crbn protein_coding retained_intron MGP_CASTEiJ_T0079389.1 MGP_CASTEiJ_G0030183.1 mouse_genomes_project 6 108106961 108109864 - Crbn protein_coding retained_intron MGP_CASTEiJ_T0079210.1 MGP_CASTEiJ_G0030149.1 mouse_genomes_project 6 93599079 93615459 + MGP_CASTEiJ_P0079210 Gm15737 protein_coding protein_coding MGP_CASTEiJ_T0004921.1 MGP_CASTEiJ_G0004209.1 mouse_genomes_project 6 114550253 114560017 - antisense antisense MGP_CASTEiJ_T0004922.1 MGP_CASTEiJ_G0004209.1 mouse_genomes_project 6 114550479 114560003 - antisense antisense MGP_CASTEiJ_T0004923.1 MGP_CASTEiJ_G0004209.1 mouse_genomes_project 6 114553229 114560036 - antisense antisense MGP_CASTEiJ_T0004924.1 MGP_CASTEiJ_G0004209.1 mouse_genomes_project 6 114553605 114560159 - antisense antisense MGP_CASTEiJ_T0077901.1 MGP_CASTEiJ_G0029866.1 mouse_genomes_project 6 53589710 53627653 - MGP_CASTEiJ_P0077901 Crhr2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077902.1 MGP_CASTEiJ_G0029866.1 mouse_genomes_project 6 53600146 53627617 - MGP_CASTEiJ_P0077902 Crhr2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077903.1 MGP_CASTEiJ_G0029866.1 mouse_genomes_project 6 53600156 53644240 - MGP_CASTEiJ_P0077903 Crhr2 protein_coding protein_coding MGP_CASTEiJ_T0077904.1 MGP_CASTEiJ_G0029866.1 mouse_genomes_project 6 53601292 53627831 - MGP_CASTEiJ_P0077904 Crhr2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077905.1 MGP_CASTEiJ_G0029866.1 mouse_genomes_project 6 53601319 53627759 - MGP_CASTEiJ_P0077905 Crhr2 protein_coding protein_coding MGP_CASTEiJ_T0077906.1 MGP_CASTEiJ_G0029866.1 mouse_genomes_project 6 53602138 53644067 - MGP_CASTEiJ_P0077906 Crhr2 protein_coding protein_coding MGP_CASTEiJ_T0077907.1 MGP_CASTEiJ_G0029866.1 mouse_genomes_project 6 53603079 53610317 - Crhr2 protein_coding retained_intron MGP_CASTEiJ_T0077908.1 MGP_CASTEiJ_G0029866.1 mouse_genomes_project 6 53608378 53644242 - Crhr2 protein_coding retained_intron MGP_CASTEiJ_T0077909.1 MGP_CASTEiJ_G0029866.1 mouse_genomes_project 6 53614580 53627617 - Crhr2 protein_coding retained_intron MGP_CASTEiJ_T0077160.1 MGP_CASTEiJ_G0029672.1 mouse_genomes_project 6 34299243 34405307 - MGP_CASTEiJ_P0077160 Ptn protein_coding protein_coding MGP_CASTEiJ_T0077161.1 MGP_CASTEiJ_G0029672.1 mouse_genomes_project 6 34325337 34405266 - MGP_CASTEiJ_P0077161 Ptn protein_coding protein_coding MGP_CASTEiJ_T0002046.1 MGP_CASTEiJ_G0001967.1 mouse_genomes_project 6 109913648 109914823 - TEC TEC MGP_CASTEiJ_T0000177.1 MGP_CASTEiJ_G0000134.1 mouse_genomes_project 6 68416688 68417159 - MGP_CASTEiJ_P0000177 Igkv12-89 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000178.1 MGP_CASTEiJ_G0000134.1 mouse_genomes_project 6 68416688 68417159 - MGP_CASTEiJ_P0000178 Igkv12-89 IG_V_gene IG_V_gene MGP_CASTEiJ_T0098633.1 MGP_CASTEiJ_G0035564.1 mouse_genomes_project 6 113035556 113035667 + Gm22093 rRNA rRNA MGP_CASTEiJ_T0014719.1 MGP_CASTEiJ_G0012882.1 mouse_genomes_project 6 5414839 5416089 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078910.1 MGP_CASTEiJ_G0030090.1 mouse_genomes_project 6 88376077 88401494 + MGP_CASTEiJ_P0078910 Copg1 protein_coding protein_coding MGP_CASTEiJ_T0078911.1 MGP_CASTEiJ_G0030090.1 mouse_genomes_project 6 88376191 88379017 + MGP_CASTEiJ_P0078911 Copg1 protein_coding protein_coding MGP_CASTEiJ_T0078912.1 MGP_CASTEiJ_G0030090.1 mouse_genomes_project 6 88376203 88381746 + Copg1 protein_coding processed_transcript MGP_CASTEiJ_T0078913.1 MGP_CASTEiJ_G0030090.1 mouse_genomes_project 6 88376220 88382916 + Copg1 protein_coding retained_intron MGP_CASTEiJ_T0078914.1 MGP_CASTEiJ_G0030090.1 mouse_genomes_project 6 88376251 88400348 + MGP_CASTEiJ_P0078914 Copg1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0078915.1 MGP_CASTEiJ_G0030090.1 mouse_genomes_project 6 88381881 88390498 + Copg1 protein_coding retained_intron MGP_CASTEiJ_T0078916.1 MGP_CASTEiJ_G0030090.1 mouse_genomes_project 6 88383069 88384056 + Copg1 protein_coding retained_intron MGP_CASTEiJ_T0078917.1 MGP_CASTEiJ_G0030090.1 mouse_genomes_project 6 88383409 88393014 + Copg1 protein_coding retained_intron MGP_CASTEiJ_T0078918.1 MGP_CASTEiJ_G0030090.1 mouse_genomes_project 6 88383950 88400430 + Copg1 protein_coding retained_intron MGP_CASTEiJ_T0078919.1 MGP_CASTEiJ_G0030090.1 mouse_genomes_project 6 88385767 88390909 + Copg1 protein_coding retained_intron MGP_CASTEiJ_T0078920.1 MGP_CASTEiJ_G0030090.1 mouse_genomes_project 6 88396700 88397980 + Copg1 protein_coding processed_transcript MGP_CASTEiJ_T0000176.1 MGP_CASTEiJ_G0000133.1 mouse_genomes_project 6 68351692 68352324 - MGP_CASTEiJ_P0000176 Igkv4-91 IG_V_gene IG_V_gene MGP_CASTEiJ_T0004786.1 MGP_CASTEiJ_G0004119.1 mouse_genomes_project 6 28135475 28136371 - Gm44296 antisense antisense MGP_CASTEiJ_T0010451.1 MGP_CASTEiJ_G0008639.1 mouse_genomes_project 6 25153426 25153522 - Mir592 miRNA miRNA MGP_CASTEiJ_T0008517.1 MGP_CASTEiJ_G0006900.1 mouse_genomes_project 6 131296008 131298792 + lincRNA lincRNA MGP_CASTEiJ_T0077097.1 MGP_CASTEiJ_G0029660.1 mouse_genomes_project 6 32316896 32385358 + Agbl3 protein_coding retained_intron MGP_CASTEiJ_T0077098.1 MGP_CASTEiJ_G0029660.1 mouse_genomes_project 6 32316896 32397324 + MGP_CASTEiJ_P0077098 Agbl3 protein_coding protein_coding MGP_CASTEiJ_T0077099.1 MGP_CASTEiJ_G0029660.1 mouse_genomes_project 6 32316896 32397324 + MGP_CASTEiJ_P0077099 Agbl3 protein_coding protein_coding MGP_CASTEiJ_T0077100.1 MGP_CASTEiJ_G0029660.1 mouse_genomes_project 6 32316906 32341280 + MGP_CASTEiJ_P0077100 Agbl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077101.1 MGP_CASTEiJ_G0029660.1 mouse_genomes_project 6 32316916 32335382 + Agbl3 protein_coding retained_intron MGP_CASTEiJ_T0077102.1 MGP_CASTEiJ_G0029660.1 mouse_genomes_project 6 32317312 32398855 + MGP_CASTEiJ_P0077102 Agbl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077103.1 MGP_CASTEiJ_G0029660.1 mouse_genomes_project 6 32317339 32343126 + Agbl3 protein_coding retained_intron MGP_CASTEiJ_T0077104.1 MGP_CASTEiJ_G0029660.1 mouse_genomes_project 6 32317339 32322134 + MGP_CASTEiJ_P0077104 Agbl3 protein_coding protein_coding MGP_CASTEiJ_T0077105.1 MGP_CASTEiJ_G0029660.1 mouse_genomes_project 6 32317340 32337949 + Agbl3 protein_coding retained_intron MGP_CASTEiJ_T0077106.1 MGP_CASTEiJ_G0029660.1 mouse_genomes_project 6 32317353 32322059 + MGP_CASTEiJ_P0077106 Agbl3 protein_coding protein_coding MGP_CASTEiJ_T0077107.1 MGP_CASTEiJ_G0029660.1 mouse_genomes_project 6 32317354 32322098 + MGP_CASTEiJ_P0077107 Agbl3 protein_coding protein_coding MGP_CASTEiJ_T0101187.1 MGP_CASTEiJ_G0038100.1 mouse_genomes_project 6 84030439 84030569 - Gm23014 snoRNA snoRNA MGP_CASTEiJ_T0014780.1 MGP_CASTEiJ_G0012943.1 mouse_genomes_project 6 39330812 39331259 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001982.1 MGP_CASTEiJ_G0001903.1 mouse_genomes_project 6 87088576 87090920 - TEC TEC MGP_CASTEiJ_T0001904.1 MGP_CASTEiJ_G0001825.1 mouse_genomes_project 6 43499900 43504152 + TEC TEC MGP_CASTEiJ_T0098392.1 MGP_CASTEiJ_G0035323.1 mouse_genomes_project 6 50596319 50596767 - pseudogene pseudogene MGP_CASTEiJ_T0078475.1 MGP_CASTEiJ_G0030005.1 mouse_genomes_project 6 83230905 83237406 + MGP_CASTEiJ_P0078475 protein_coding protein_coding MGP_CASTEiJ_T0078477.1 MGP_CASTEiJ_G0030005.1 mouse_genomes_project 6 83230962 83233159 + protein_coding retained_intron MGP_CASTEiJ_T0078478.1 MGP_CASTEiJ_G0030005.1 mouse_genomes_project 6 83236112 83236846 + protein_coding retained_intron MGP_CASTEiJ_T0015104.1 MGP_CASTEiJ_G0013267.1 mouse_genomes_project 6 152221137 152222082 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098391.1 MGP_CASTEiJ_G0035322.1 mouse_genomes_project 6 45620861 45621406 - pseudogene pseudogene MGP_CASTEiJ_T0080887.1 MGP_CASTEiJ_G0030507.1 mouse_genomes_project 6 139844472 139983528 + Ptpro protein_coding retained_intron MGP_CASTEiJ_T0080888.1 MGP_CASTEiJ_G0030507.1 mouse_genomes_project 6 139844487 140068080 + MGP_CASTEiJ_P0080888 Ptpro protein_coding protein_coding MGP_CASTEiJ_T0080889.1 MGP_CASTEiJ_G0030507.1 mouse_genomes_project 6 139844618 140068080 + MGP_CASTEiJ_P0080889 Ptpro protein_coding protein_coding MGP_CASTEiJ_T0080890.1 MGP_CASTEiJ_G0030507.1 mouse_genomes_project 6 140017272 140068086 + MGP_CASTEiJ_P0080890 Ptpro protein_coding protein_coding MGP_CASTEiJ_T0080891.1 MGP_CASTEiJ_G0030507.1 mouse_genomes_project 6 140017288 140068086 + MGP_CASTEiJ_P0080891 Ptpro protein_coding protein_coding MGP_CASTEiJ_T0080892.1 MGP_CASTEiJ_G0030507.1 mouse_genomes_project 6 140017310 140020709 + Ptpro protein_coding retained_intron MGP_CASTEiJ_T0080893.1 MGP_CASTEiJ_G0030507.1 mouse_genomes_project 6 140057775 140067157 + Ptpro protein_coding processed_transcript MGP_CASTEiJ_T0080894.1 MGP_CASTEiJ_G0030507.1 mouse_genomes_project 6 140058925 140067475 + Ptpro protein_coding processed_transcript MGP_CASTEiJ_T0008436.1 MGP_CASTEiJ_G0006833.1 mouse_genomes_project 6 84775612 84776268 + lincRNA lincRNA MGP_CASTEiJ_T0004883.1 MGP_CASTEiJ_G0004185.1 mouse_genomes_project 6 88215039 88216224 - Gm44210 antisense antisense MGP_CASTEiJ_T0076417.1 MGP_CASTEiJ_G0029535.1 mouse_genomes_project 6 2841723 3038902 - MGP_CASTEiJ_P0076417 Slc25a13 protein_coding unknown_likely_coding MGP_CASTEiJ_T0076418.1 MGP_CASTEiJ_G0029535.1 mouse_genomes_project 6 2850500 3038954 - MGP_CASTEiJ_P0076418 Slc25a13 protein_coding protein_coding MGP_CASTEiJ_T0076419.1 MGP_CASTEiJ_G0029535.1 mouse_genomes_project 6 2850501 3039009 - MGP_CASTEiJ_P0076419 Slc25a13 protein_coding protein_coding MGP_CASTEiJ_T0076420.1 MGP_CASTEiJ_G0029535.1 mouse_genomes_project 6 2878934 2905768 - Slc25a13 protein_coding processed_transcript MGP_CASTEiJ_T0076421.1 MGP_CASTEiJ_G0029535.1 mouse_genomes_project 6 2925955 2987665 - Slc25a13 protein_coding processed_transcript MGP_CASTEiJ_T0076422.1 MGP_CASTEiJ_G0029535.1 mouse_genomes_project 6 2944249 3009292 - Slc25a13 protein_coding retained_intron MGP_CASTEiJ_T0000195.1 MGP_CASTEiJ_G0000148.1 mouse_genomes_project 6 69473953 69474466 - MGP_CASTEiJ_P0000195 Igkv18-36 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000196.1 MGP_CASTEiJ_G0000148.1 mouse_genomes_project 6 69473953 69474466 - MGP_CASTEiJ_P0000196 Igkv18-36 IG_V_gene IG_V_gene MGP_CASTEiJ_T0008564.1 MGP_CASTEiJ_G0006929.1 mouse_genomes_project 6 151817125 151828379 + Gm44115 lincRNA lincRNA MGP_CASTEiJ_T0077986.1 MGP_CASTEiJ_G0029893.1 mouse_genomes_project 6 56146459 56219324 + MGP_CASTEiJ_P0077986 Herc6 protein_coding protein_coding MGP_CASTEiJ_T0077987.1 MGP_CASTEiJ_G0029893.1 mouse_genomes_project 6 56146467 56150591 + MGP_CASTEiJ_P0077987 Herc6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077988.1 MGP_CASTEiJ_G0029893.1 mouse_genomes_project 6 56164067 56183680 + Herc6 protein_coding retained_intron MGP_CASTEiJ_T0077989.1 MGP_CASTEiJ_G0029893.1 mouse_genomes_project 6 56166552 56170938 + Herc6 protein_coding retained_intron MGP_CASTEiJ_T0077990.1 MGP_CASTEiJ_G0029893.1 mouse_genomes_project 6 56167436 56177000 + Herc6 protein_coding retained_intron MGP_CASTEiJ_T0077991.1 MGP_CASTEiJ_G0029893.1 mouse_genomes_project 6 56170875 56178252 + Herc6 protein_coding retained_intron MGP_CASTEiJ_T0002602.1 MGP_CASTEiJ_G0002497.1 mouse_genomes_project 6 39024314 39024805 + MGP_CASTEiJ_P0002602 Trbv16 TR_V_gene TR_V_gene MGP_CASTEiJ_T0102384.1 MGP_CASTEiJ_G0039109.1 mouse_genomes_project 6 40971834 40972155 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002488.1 MGP_CASTEiJ_G0002398.1 mouse_genomes_project 6 39368778 39368829 + MGP_CASTEiJ_P0002488 Trbj1-4 TR_J_gene TR_J_gene MGP_CASTEiJ_T0014871.1 MGP_CASTEiJ_G0013034.1 mouse_genomes_project 6 66643467 66644231 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077403.1 MGP_CASTEiJ_G0029743.1 mouse_genomes_project 6 40107050 40111666 + MGP_CASTEiJ_P0077403 Gstk1 protein_coding protein_coding MGP_CASTEiJ_T0077404.1 MGP_CASTEiJ_G0029743.1 mouse_genomes_project 6 40107094 40111666 + MGP_CASTEiJ_P0077404 Gstk1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077405.1 MGP_CASTEiJ_G0029743.1 mouse_genomes_project 6 40107104 40111672 + Gstk1 protein_coding retained_intron MGP_CASTEiJ_T0077406.1 MGP_CASTEiJ_G0029743.1 mouse_genomes_project 6 40107138 40111544 + Gstk1 protein_coding processed_transcript MGP_CASTEiJ_T0079460.1 MGP_CASTEiJ_G0030199.1 mouse_genomes_project 6 114560190 114592115 + Setd5 protein_coding retained_intron MGP_CASTEiJ_T0079461.1 MGP_CASTEiJ_G0030199.1 mouse_genomes_project 6 114560190 114642808 + MGP_CASTEiJ_P0079461 Setd5 protein_coding protein_coding MGP_CASTEiJ_T0079462.1 MGP_CASTEiJ_G0030199.1 mouse_genomes_project 6 114561219 114590878 + Setd5 protein_coding processed_transcript MGP_CASTEiJ_T0079463.1 MGP_CASTEiJ_G0030199.1 mouse_genomes_project 6 114561260 114603825 + Setd5 protein_coding processed_transcript MGP_CASTEiJ_T0079464.1 MGP_CASTEiJ_G0030199.1 mouse_genomes_project 6 114561297 114642797 + MGP_CASTEiJ_P0079464 Setd5 protein_coding protein_coding MGP_CASTEiJ_T0079465.1 MGP_CASTEiJ_G0030199.1 mouse_genomes_project 6 114589493 114627225 + Setd5 protein_coding processed_transcript MGP_CASTEiJ_T0079466.1 MGP_CASTEiJ_G0030199.1 mouse_genomes_project 6 114589595 114642808 + MGP_CASTEiJ_P0079466 Setd5 protein_coding protein_coding MGP_CASTEiJ_T0079467.1 MGP_CASTEiJ_G0030199.1 mouse_genomes_project 6 114594785 114642807 + MGP_CASTEiJ_P0079467 Setd5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079468.1 MGP_CASTEiJ_G0030199.1 mouse_genomes_project 6 114594906 114604139 + Setd5 protein_coding retained_intron MGP_CASTEiJ_T0079469.1 MGP_CASTEiJ_G0030199.1 mouse_genomes_project 6 114595897 114641210 + Setd5 protein_coding retained_intron MGP_CASTEiJ_T0079470.1 MGP_CASTEiJ_G0030199.1 mouse_genomes_project 6 114596449 114599719 + Setd5 protein_coding retained_intron MGP_CASTEiJ_T0079471.1 MGP_CASTEiJ_G0030199.1 mouse_genomes_project 6 114596449 114603794 + Setd5 protein_coding retained_intron MGP_CASTEiJ_T0079472.1 MGP_CASTEiJ_G0030199.1 mouse_genomes_project 6 114612458 114617359 + Setd5 protein_coding retained_intron MGP_CASTEiJ_T0079473.1 MGP_CASTEiJ_G0030199.1 mouse_genomes_project 6 114614859 114641229 + Setd5 protein_coding retained_intron MGP_CASTEiJ_T0079474.1 MGP_CASTEiJ_G0030199.1 mouse_genomes_project 6 114615659 114627466 + Setd5 protein_coding processed_transcript MGP_CASTEiJ_T0077469.1 MGP_CASTEiJ_G0029763.1 mouse_genomes_project 6 40704167 40705100 + MGP_CASTEiJ_P0077469 Olfr450 protein_coding protein_coding MGP_CASTEiJ_T0101168.1 MGP_CASTEiJ_G0038081.1 mouse_genomes_project 6 48738425 48738549 - Gm26289 snoRNA snoRNA MGP_CASTEiJ_T0078716.1 MGP_CASTEiJ_G0030053.1 mouse_genomes_project 6 86254590 86257583 - MGP_CASTEiJ_P0078716 Nat8f4 protein_coding protein_coding MGP_CASTEiJ_T0014905.1 MGP_CASTEiJ_G0013068.1 mouse_genomes_project 6 78983165 78983872 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008348.1 MGP_CASTEiJ_G0006770.1 mouse_genomes_project 6 32833590 32844489 + 1810058I24Rik lincRNA lincRNA MGP_CASTEiJ_T0008349.1 MGP_CASTEiJ_G0006770.1 mouse_genomes_project 6 32833652 32842610 + 1810058I24Rik lincRNA lincRNA MGP_CASTEiJ_T0008350.1 MGP_CASTEiJ_G0006770.1 mouse_genomes_project 6 32833668 32842995 + 1810058I24Rik lincRNA lincRNA MGP_CASTEiJ_T0014969.1 MGP_CASTEiJ_G0013132.1 mouse_genomes_project 6 105521587 105522042 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002025.1 MGP_CASTEiJ_G0001946.1 mouse_genomes_project 6 98026387 98029925 + TEC TEC MGP_CASTEiJ_T0001860.1 MGP_CASTEiJ_G0001781.1 mouse_genomes_project 6 14678863 14680242 - TEC TEC MGP_CASTEiJ_T0015041.1 MGP_CASTEiJ_G0013204.1 mouse_genomes_project 6 129430612 129430922 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080032.1 MGP_CASTEiJ_G0030295.1 mouse_genomes_project 6 122594946 122615679 + MGP_CASTEiJ_P0080032 Slc25a18 protein_coding protein_coding MGP_CASTEiJ_T0001884.1 MGP_CASTEiJ_G0001805.1 mouse_genomes_project 6 32399100 32400312 + TEC TEC MGP_CASTEiJ_T0008457.1 MGP_CASTEiJ_G0006848.1 mouse_genomes_project 6 91101696 91135536 + lincRNA lincRNA MGP_CASTEiJ_T0078796.1 MGP_CASTEiJ_G0030064.1 mouse_genomes_project 6 86838769 86857460 + MGP_CASTEiJ_P0078796 Gm44790 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0014730.1 MGP_CASTEiJ_G0012893.1 mouse_genomes_project 6 10808955 10809309 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010478.1 MGP_CASTEiJ_G0008666.1 mouse_genomes_project 6 83168066 83168129 + Mir7040 miRNA miRNA MGP_CASTEiJ_T0015071.1 MGP_CASTEiJ_G0013234.1 mouse_genomes_project 6 135554931 135555277 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078101.1 MGP_CASTEiJ_G0029923.1 mouse_genomes_project 6 64975501 65023446 + MGP_CASTEiJ_P0078101 Ndnf protein_coding protein_coding MGP_CASTEiJ_T0078102.1 MGP_CASTEiJ_G0029923.1 mouse_genomes_project 6 65012724 65014763 + Ndnf protein_coding retained_intron MGP_CASTEiJ_T0015002.1 MGP_CASTEiJ_G0013165.1 mouse_genomes_project 6 118779120 118779510 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0077646.1 MGP_CASTEiJ_G0029809.1 mouse_genomes_project 6 46868142 46876592 + MGP_CASTEiJ_P0077646 Gimap5 protein_coding protein_coding MGP_CASTEiJ_T0077647.1 MGP_CASTEiJ_G0029809.1 mouse_genomes_project 6 46868143 46869438 + Gimap5 protein_coding processed_transcript MGP_CASTEiJ_T0077648.1 MGP_CASTEiJ_G0029809.1 mouse_genomes_project 6 46868144 46869465 + Gimap5 protein_coding processed_transcript MGP_CASTEiJ_T0077649.1 MGP_CASTEiJ_G0029809.1 mouse_genomes_project 6 46868244 46870579 + Gimap5 protein_coding retained_intron MGP_CASTEiJ_T0079680.1 MGP_CASTEiJ_G0030233.1 mouse_genomes_project 6 116719216 116751976 + MGP_CASTEiJ_P0079680 Gm17482 protein_coding protein_coding MGP_CASTEiJ_T0079249.1 MGP_CASTEiJ_G0030157.1 mouse_genomes_project 6 97058928 97060667 - MGP_CASTEiJ_P0079249 1700123L14Rik protein_coding protein_coding MGP_CASTEiJ_T0080202.1 MGP_CASTEiJ_G0030337.1 mouse_genomes_project 6 126484359 126504116 - MGP_CASTEiJ_P0080202 Pex5 protein_coding protein_coding MGP_CASTEiJ_T0080203.1 MGP_CASTEiJ_G0030337.1 mouse_genomes_project 6 126484360 126503482 - MGP_CASTEiJ_P0080203 Pex5 protein_coding protein_coding MGP_CASTEiJ_T0080204.1 MGP_CASTEiJ_G0030337.1 mouse_genomes_project 6 126484360 126504116 - MGP_CASTEiJ_P0080204 Pex5 protein_coding protein_coding MGP_CASTEiJ_T0080205.1 MGP_CASTEiJ_G0030337.1 mouse_genomes_project 6 126484360 126503912 - MGP_CASTEiJ_P0080205 Pex5 protein_coding protein_coding MGP_CASTEiJ_T0080206.1 MGP_CASTEiJ_G0030337.1 mouse_genomes_project 6 126484375 126504086 - MGP_CASTEiJ_P0080206 Pex5 protein_coding protein_coding MGP_CASTEiJ_T0080207.1 MGP_CASTEiJ_G0030337.1 mouse_genomes_project 6 126485451 126488618 - Pex5 protein_coding retained_intron MGP_CASTEiJ_T0080208.1 MGP_CASTEiJ_G0030337.1 mouse_genomes_project 6 126492138 126503073 - Pex5 protein_coding processed_transcript MGP_CASTEiJ_T0080209.1 MGP_CASTEiJ_G0030337.1 mouse_genomes_project 6 126493322 126494377 - Pex5 protein_coding retained_intron MGP_CASTEiJ_T0102371.1 MGP_CASTEiJ_G0039096.1 mouse_genomes_project 6 25712450 25712726 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0014701.1 MGP_CASTEiJ_G0012864.1 mouse_genomes_project 6 988938 989185 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0001840.1 MGP_CASTEiJ_G0001761.1 mouse_genomes_project 6 12905 15004 - TEC TEC MGP_CASTEiJ_T0080773.1 MGP_CASTEiJ_G0030482.1 mouse_genomes_project 6 137218233 137246974 - MGP_CASTEiJ_P0080773 Gpr19 protein_coding protein_coding MGP_CASTEiJ_T0080774.1 MGP_CASTEiJ_G0030482.1 mouse_genomes_project 6 137218233 137246864 - MGP_CASTEiJ_P0080774 Gpr19 protein_coding protein_coding MGP_CASTEiJ_T0080775.1 MGP_CASTEiJ_G0030482.1 mouse_genomes_project 6 137218248 137246907 - MGP_CASTEiJ_P0080775 Gpr19 protein_coding protein_coding MGP_CASTEiJ_T0080776.1 MGP_CASTEiJ_G0030482.1 mouse_genomes_project 6 137218297 137236936 - MGP_CASTEiJ_P0080776 Gpr19 protein_coding protein_coding MGP_CASTEiJ_T0080777.1 MGP_CASTEiJ_G0030482.1 mouse_genomes_project 6 137218302 137246912 - MGP_CASTEiJ_P0080777 Gpr19 protein_coding protein_coding MGP_CASTEiJ_T0080778.1 MGP_CASTEiJ_G0030482.1 mouse_genomes_project 6 137219177 137246874 - MGP_CASTEiJ_P0080778 Gpr19 protein_coding protein_coding MGP_CASTEiJ_T0080779.1 MGP_CASTEiJ_G0030482.1 mouse_genomes_project 6 137219348 137246864 - MGP_CASTEiJ_P0080779 Gpr19 protein_coding protein_coding MGP_CASTEiJ_T0080780.1 MGP_CASTEiJ_G0030482.1 mouse_genomes_project 6 137219389 137236872 - MGP_CASTEiJ_P0080780 Gpr19 protein_coding protein_coding MGP_CASTEiJ_T0080781.1 MGP_CASTEiJ_G0030482.1 mouse_genomes_project 6 137226386 137246936 - Gpr19 protein_coding processed_transcript MGP_CASTEiJ_T0080782.1 MGP_CASTEiJ_G0030482.1 mouse_genomes_project 6 137235992 137246121 - Gpr19 protein_coding processed_transcript MGP_CASTEiJ_T0080783.1 MGP_CASTEiJ_G0030482.1 mouse_genomes_project 6 137236754 137247636 - Gpr19 protein_coding processed_transcript MGP_CASTEiJ_T0080784.1 MGP_CASTEiJ_G0030482.1 mouse_genomes_project 6 137245734 137246974 - Gpr19 protein_coding processed_transcript MGP_CASTEiJ_T0014849.1 MGP_CASTEiJ_G0013012.1 mouse_genomes_project 6 64477951 64478180 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099967.1 MGP_CASTEiJ_G0036880.1 mouse_genomes_project 6 98474704 98474868 - Gm23510 snRNA snRNA MGP_CASTEiJ_T0017544.1 MGP_CASTEiJ_G0014958.1 mouse_genomes_project 6 83606825 83613383 + B230319C09Rik processed_transcript antisense MGP_CASTEiJ_T0017545.1 MGP_CASTEiJ_G0014958.1 mouse_genomes_project 6 83606880 83610420 + B230319C09Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017546.1 MGP_CASTEiJ_G0014958.1 mouse_genomes_project 6 83606882 83607709 + B230319C09Rik processed_transcript processed_transcript MGP_CASTEiJ_T0098771.1 MGP_CASTEiJ_G0035702.1 mouse_genomes_project 6 141899367 141899534 - Gm25434 scaRNA scaRNA MGP_CASTEiJ_T0078445.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83174411 83177696 + MGP_CASTEiJ_P0078445 Aup1 protein_coding protein_coding MGP_CASTEiJ_T0078446.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83174534 83177574 + Aup1 protein_coding retained_intron MGP_CASTEiJ_T0078447.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83174602 83176274 + Aup1 protein_coding retained_intron MGP_CASTEiJ_T0078448.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83174617 83176244 + Aup1 protein_coding retained_intron MGP_CASTEiJ_T0078449.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83174619 83175058 + Aup1 protein_coding retained_intron MGP_CASTEiJ_T0078450.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83174619 83177566 + MGP_CASTEiJ_P0078450 Aup1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078451.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83174624 83176323 + MGP_CASTEiJ_P0078451 Aup1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078452.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83174626 83175404 + Aup1 protein_coding retained_intron MGP_CASTEiJ_T0078453.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83174636 83177570 + MGP_CASTEiJ_P0078453 Aup1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078454.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83174643 83176177 + Aup1 protein_coding retained_intron MGP_CASTEiJ_T0078455.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83175279 83176006 + Aup1 protein_coding retained_intron MGP_CASTEiJ_T0078456.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83175602 83176202 + Aup1 protein_coding retained_intron MGP_CASTEiJ_T0078457.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83176298 83177532 + Aup1 protein_coding retained_intron MGP_CASTEiJ_T0078458.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83176399 83176725 + Aup1 protein_coding retained_intron MGP_CASTEiJ_T0078459.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83176735 83177281 + Aup1 protein_coding retained_intron MGP_CASTEiJ_T0078460.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83176740 83177570 + Aup1 protein_coding retained_intron MGP_CASTEiJ_T0078461.1 MGP_CASTEiJ_G0030000.1 mouse_genomes_project 6 83177108 83177564 + Aup1 protein_coding retained_intron MGP_CASTEiJ_T0008343.1 MGP_CASTEiJ_G0006765.1 mouse_genomes_project 6 30193940 30194600 - BC049739 lincRNA lincRNA MGP_CASTEiJ_T0081098.1 MGP_CASTEiJ_G0030546.1 mouse_genomes_project 6 146719173 147126965 - MGP_CASTEiJ_P0081098 Sox5 protein_coding protein_coding MGP_CASTEiJ_T0081099.1 MGP_CASTEiJ_G0030546.1 mouse_genomes_project 6 146719173 147127077 - MGP_CASTEiJ_P0081099 Sox5 protein_coding protein_coding MGP_CASTEiJ_T0081100.1 MGP_CASTEiJ_G0030546.1 mouse_genomes_project 6 146725738 147127037 - MGP_CASTEiJ_P0081100 Sox5 protein_coding protein_coding MGP_CASTEiJ_T0081101.1 MGP_CASTEiJ_G0030546.1 mouse_genomes_project 6 146726972 146842387 - MGP_CASTEiJ_P0081101 Sox5 protein_coding protein_coding MGP_CASTEiJ_T0081102.1 MGP_CASTEiJ_G0030546.1 mouse_genomes_project 6 146727107 147126937 - MGP_CASTEiJ_P0081102 Sox5 protein_coding protein_coding MGP_CASTEiJ_T0081103.1 MGP_CASTEiJ_G0030546.1 mouse_genomes_project 6 146733459 146842382 - Sox5 protein_coding processed_transcript MGP_CASTEiJ_T0081104.1 MGP_CASTEiJ_G0030546.1 mouse_genomes_project 6 146739385 147744611 - Sox5 protein_coding retained_intron MGP_CASTEiJ_T0081105.1 MGP_CASTEiJ_G0030546.1 mouse_genomes_project 6 146740483 146842378 - MGP_CASTEiJ_P0081105 Sox5 protein_coding protein_coding MGP_CASTEiJ_T0081106.1 MGP_CASTEiJ_G0030546.1 mouse_genomes_project 6 146756953 146842369 - MGP_CASTEiJ_P0081106 Sox5 protein_coding protein_coding MGP_CASTEiJ_T0081107.1 MGP_CASTEiJ_G0030546.1 mouse_genomes_project 6 146798758 147121909 - Sox5 protein_coding retained_intron MGP_CASTEiJ_T0081108.1 MGP_CASTEiJ_G0030546.1 mouse_genomes_project 6 146923710 147126965 - Sox5 protein_coding retained_intron MGP_CASTEiJ_T0081109.1 MGP_CASTEiJ_G0030546.1 mouse_genomes_project 6 147014580 147744553 - Sox5 protein_coding processed_transcript MGP_CASTEiJ_T0081110.1 MGP_CASTEiJ_G0030546.1 mouse_genomes_project 6 147028117 147121538 - Sox5 protein_coding processed_transcript MGP_CASTEiJ_T0081111.1 MGP_CASTEiJ_G0030546.1 mouse_genomes_project 6 147067759 147127077 - Sox5 protein_coding retained_intron MGP_CASTEiJ_T0102445.1 MGP_CASTEiJ_G0039170.1 mouse_genomes_project 6 135880532 135882556 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102398.1 MGP_CASTEiJ_G0039123.1 mouse_genomes_project 6 56675276 56676166 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0080731.1 MGP_CASTEiJ_G0030468.1 mouse_genomes_project 6 135392193 135393111 - MGP_CASTEiJ_P0080731 Tas2r116 protein_coding protein_coding MGP_CASTEiJ_T0080690.1 MGP_CASTEiJ_G0030443.1 mouse_genomes_project 6 133678125 133714114 - MGP_CASTEiJ_P0080690 Klra2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0080691.1 MGP_CASTEiJ_G0030443.1 mouse_genomes_project 6 133678125 133706661 - MGP_CASTEiJ_P0080691 Klra2 protein_coding protein_coding MGP_CASTEiJ_T0000203.1 MGP_CASTEiJ_G0000153.1 mouse_genomes_project 6 69561086 69561647 - MGP_CASTEiJ_P0000203 IG_V_gene IG_V_gene MGP_CASTEiJ_T0014838.1 MGP_CASTEiJ_G0013001.1 mouse_genomes_project 6 61465723 61466033 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010507.1 MGP_CASTEiJ_G0008695.1 mouse_genomes_project 6 127223769 127223832 + Mir7045 miRNA miRNA MGP_CASTEiJ_T0079100.1 MGP_CASTEiJ_G0030129.1 mouse_genomes_project 6 91646183 91755101 - MGP_CASTEiJ_P0079100 Nup210 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079101.1 MGP_CASTEiJ_G0030129.1 mouse_genomes_project 6 91646186 91755070 - MGP_CASTEiJ_P0079101 Nup210 protein_coding protein_coding MGP_CASTEiJ_T0079102.1 MGP_CASTEiJ_G0030129.1 mouse_genomes_project 6 91646188 91689814 - MGP_CASTEiJ_P0079102 Nup210 protein_coding protein_coding MGP_CASTEiJ_T0079103.1 MGP_CASTEiJ_G0030129.1 mouse_genomes_project 6 91646188 91755060 - MGP_CASTEiJ_P0079103 Nup210 protein_coding protein_coding MGP_CASTEiJ_T0079104.1 MGP_CASTEiJ_G0030129.1 mouse_genomes_project 6 91646435 91650444 - Nup210 protein_coding processed_transcript MGP_CASTEiJ_T0079105.1 MGP_CASTEiJ_G0030129.1 mouse_genomes_project 6 91651656 91658073 - Nup210 protein_coding retained_intron MGP_CASTEiJ_T0079106.1 MGP_CASTEiJ_G0030129.1 mouse_genomes_project 6 91651835 91656631 - Nup210 protein_coding processed_transcript MGP_CASTEiJ_T0079107.1 MGP_CASTEiJ_G0030129.1 mouse_genomes_project 6 91659138 91664957 - Nup210 protein_coding retained_intron MGP_CASTEiJ_T0079108.1 MGP_CASTEiJ_G0030129.1 mouse_genomes_project 6 91687010 91688056 - Nup210 protein_coding processed_transcript MGP_CASTEiJ_T0079109.1 MGP_CASTEiJ_G0030129.1 mouse_genomes_project 6 91695127 91700244 - Nup210 protein_coding processed_transcript MGP_CASTEiJ_T0079110.1 MGP_CASTEiJ_G0030129.1 mouse_genomes_project 6 91723812 91736863 - Nup210 protein_coding retained_intron MGP_CASTEiJ_T0079111.1 MGP_CASTEiJ_G0030129.1 mouse_genomes_project 6 91752588 91755037 - Nup210 protein_coding retained_intron MGP_CASTEiJ_T0079058.1 MGP_CASTEiJ_G0030119.1 mouse_genomes_project 6 90885801 90886373 + MGP_CASTEiJ_P0079058 protein_coding protein_coding MGP_CASTEiJ_T0004951.1 MGP_CASTEiJ_G0004235.1 mouse_genomes_project 6 129362221 129367569 + antisense antisense MGP_CASTEiJ_T0079446.1 MGP_CASTEiJ_G0030197.1 mouse_genomes_project 6 114181992 114421768 - MGP_CASTEiJ_P0079446 Srgap3 protein_coding protein_coding MGP_CASTEiJ_T0079447.1 MGP_CASTEiJ_G0030197.1 mouse_genomes_project 6 114181995 114421262 - MGP_CASTEiJ_P0079447 Srgap3 protein_coding protein_coding MGP_CASTEiJ_T0079448.1 MGP_CASTEiJ_G0030197.1 mouse_genomes_project 6 114231327 114421768 - Srgap3 protein_coding retained_intron MGP_CASTEiJ_T0079449.1 MGP_CASTEiJ_G0030197.1 mouse_genomes_project 6 114261259 114298172 - Srgap3 protein_coding retained_intron MGP_CASTEiJ_T0001987.1 MGP_CASTEiJ_G0001908.1 mouse_genomes_project 6 87628281 87630318 - TEC TEC MGP_CASTEiJ_T0002423.1 MGP_CASTEiJ_G0002338.1 mouse_genomes_project 6 39376023 39376038 + MGP_CASTEiJ_P0002423 Trbd2 TR_D_gene TR_D_gene MGP_CASTEiJ_T0078118.1 MGP_CASTEiJ_G0029931.1 mouse_genomes_project 6 66273994 66393748 + MGP_CASTEiJ_P0078118 Gng12 protein_coding protein_coding MGP_CASTEiJ_T0078119.1 MGP_CASTEiJ_G0029931.1 mouse_genomes_project 6 66274020 66390322 + MGP_CASTEiJ_P0078119 Gng12 protein_coding protein_coding MGP_CASTEiJ_T0078120.1 MGP_CASTEiJ_G0029931.1 mouse_genomes_project 6 66274028 66390670 + MGP_CASTEiJ_P0078120 Gng12 protein_coding protein_coding MGP_CASTEiJ_T0078121.1 MGP_CASTEiJ_G0029931.1 mouse_genomes_project 6 66274031 66390686 + MGP_CASTEiJ_P0078121 Gng12 protein_coding protein_coding MGP_CASTEiJ_T0078122.1 MGP_CASTEiJ_G0029931.1 mouse_genomes_project 6 66274034 66390294 + MGP_CASTEiJ_P0078122 Gng12 protein_coding protein_coding MGP_CASTEiJ_T0078123.1 MGP_CASTEiJ_G0029931.1 mouse_genomes_project 6 66274037 66391337 + MGP_CASTEiJ_P0078123 Gng12 protein_coding protein_coding MGP_CASTEiJ_T0078124.1 MGP_CASTEiJ_G0029931.1 mouse_genomes_project 6 66274053 66390241 + MGP_CASTEiJ_P0078124 Gng12 protein_coding protein_coding MGP_CASTEiJ_T0078125.1 MGP_CASTEiJ_G0029931.1 mouse_genomes_project 6 66274152 66390539 + MGP_CASTEiJ_P0078125 Gng12 protein_coding protein_coding MGP_CASTEiJ_T0078126.1 MGP_CASTEiJ_G0029931.1 mouse_genomes_project 6 66274494 66389960 + MGP_CASTEiJ_P0078126 Gng12 protein_coding protein_coding MGP_CASTEiJ_T0008311.1 MGP_CASTEiJ_G0006744.1 mouse_genomes_project 6 19129177 19217552 - Gm26719 lincRNA lincRNA MGP_CASTEiJ_T0081285.1 MGP_CASTEiJ_G0030577.1 mouse_genomes_project 6 151891590 151911773 - Ipo8 protein_coding retained_intron MGP_CASTEiJ_T0081286.1 MGP_CASTEiJ_G0030577.1 mouse_genomes_project 6 151891590 151957515 - MGP_CASTEiJ_P0081286 Ipo8 protein_coding protein_coding MGP_CASTEiJ_T0081287.1 MGP_CASTEiJ_G0030577.1 mouse_genomes_project 6 151891600 151896497 - Ipo8 protein_coding retained_intron MGP_CASTEiJ_T0081288.1 MGP_CASTEiJ_G0030577.1 mouse_genomes_project 6 151897175 151899599 - Ipo8 protein_coding retained_intron MGP_CASTEiJ_T0081289.1 MGP_CASTEiJ_G0030577.1 mouse_genomes_project 6 151897788 151904484 - Ipo8 protein_coding retained_intron MGP_CASTEiJ_T0081290.1 MGP_CASTEiJ_G0030577.1 mouse_genomes_project 6 151906358 151922812 - Ipo8 protein_coding retained_intron MGP_CASTEiJ_T0081291.1 MGP_CASTEiJ_G0030577.1 mouse_genomes_project 6 151913903 151950560 - Ipo8 protein_coding retained_intron MGP_CASTEiJ_T0081292.1 MGP_CASTEiJ_G0030577.1 mouse_genomes_project 6 151926048 151944420 - Ipo8 protein_coding processed_transcript MGP_CASTEiJ_T0081293.1 MGP_CASTEiJ_G0030577.1 mouse_genomes_project 6 151926049 151957512 - MGP_CASTEiJ_P0081293 Ipo8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081294.1 MGP_CASTEiJ_G0030577.1 mouse_genomes_project 6 151926051 151957474 - MGP_CASTEiJ_P0081294 Ipo8 protein_coding protein_coding MGP_CASTEiJ_T0081295.1 MGP_CASTEiJ_G0030577.1 mouse_genomes_project 6 151945950 151948866 - Ipo8 protein_coding retained_intron MGP_CASTEiJ_T0010496.1 MGP_CASTEiJ_G0008684.1 mouse_genomes_project 6 116572942 116573037 + Gm24767 miRNA miRNA MGP_CASTEiJ_T0102437.1 MGP_CASTEiJ_G0039162.1 mouse_genomes_project 6 135348874 135349803 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0078008.1 MGP_CASTEiJ_G0029899.1 mouse_genomes_project 6 56458021 56459018 - MGP_CASTEiJ_P0078008 Vmn1r23 protein_coding protein_coding MGP_CASTEiJ_T0002000.1 MGP_CASTEiJ_G0001921.1 mouse_genomes_project 6 89043649 89044625 + TEC TEC MGP_CASTEiJ_T0015064.1 MGP_CASTEiJ_G0013227.1 mouse_genomes_project 6 134502050 134502531 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008557.1 MGP_CASTEiJ_G0006924.1 mouse_genomes_project 6 150779297 150790972 + 1700049E15Rik lincRNA lincRNA MGP_CASTEiJ_T0008558.1 MGP_CASTEiJ_G0006924.1 mouse_genomes_project 6 150783754 150790946 + 1700049E15Rik lincRNA lincRNA MGP_CASTEiJ_T0001906.1 MGP_CASTEiJ_G0001827.1 mouse_genomes_project 6 44041210 44043165 + TEC TEC MGP_CASTEiJ_T0080725.1 MGP_CASTEiJ_G0030462.1 mouse_genomes_project 6 135255616 135256767 + MGP_CASTEiJ_P0080725 Tas2r117 protein_coding protein_coding MGP_CASTEiJ_T0010459.1 MGP_CASTEiJ_G0008647.1 mouse_genomes_project 6 28456748 28456836 - Mir29a miRNA miRNA MGP_CASTEiJ_T0098997.1 MGP_CASTEiJ_G0035917.1 mouse_genomes_project 6 115349834 115351708 - Gm44167 sense_intronic sense_intronic MGP_CASTEiJ_T0078380.1 MGP_CASTEiJ_G0029985.1 mouse_genomes_project 6 78392524 78394823 - Reg3g protein_coding retained_intron MGP_CASTEiJ_T0078381.1 MGP_CASTEiJ_G0029985.1 mouse_genomes_project 6 78392524 78395124 - MGP_CASTEiJ_P0078381 Reg3g protein_coding protein_coding MGP_CASTEiJ_T0002060.1 MGP_CASTEiJ_G0001981.1 mouse_genomes_project 6 119506334 119508213 - TEC TEC MGP_CASTEiJ_T0002061.1 MGP_CASTEiJ_G0001981.1 mouse_genomes_project 6 119507578 119508214 - TEC TEC MGP_CASTEiJ_T0014869.1 MGP_CASTEiJ_G0013032.1 mouse_genomes_project 6 66596767 66597232 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008423.1 MGP_CASTEiJ_G0006825.1 mouse_genomes_project 6 81729595 81768389 - Gm43902 lincRNA lincRNA MGP_CASTEiJ_T0078806.1 MGP_CASTEiJ_G0030067.1 mouse_genomes_project 6 87050452 87052000 + MGP_CASTEiJ_P0078806 Asprv1 protein_coding protein_coding MGP_CASTEiJ_T0080321.1 MGP_CASTEiJ_G0030357.1 mouse_genomes_project 6 126972853 126997851 - MGP_CASTEiJ_P0080321 Cd4 protein_coding protein_coding MGP_CASTEiJ_T0080322.1 MGP_CASTEiJ_G0030357.1 mouse_genomes_project 6 126974794 126978457 - Cd4 protein_coding processed_transcript MGP_CASTEiJ_T0080323.1 MGP_CASTEiJ_G0030357.1 mouse_genomes_project 6 126974894 126978674 - Cd4 protein_coding processed_transcript MGP_CASTEiJ_T0080324.1 MGP_CASTEiJ_G0030357.1 mouse_genomes_project 6 126975499 126997829 - Cd4 protein_coding retained_intron MGP_CASTEiJ_T0080325.1 MGP_CASTEiJ_G0030357.1 mouse_genomes_project 6 126986857 126997830 - Cd4 protein_coding retained_intron MGP_CASTEiJ_T0004873.1 MGP_CASTEiJ_G0004182.1 mouse_genomes_project 6 86946126 86970196 + 1600020E01Rik antisense antisense MGP_CASTEiJ_T0004874.1 MGP_CASTEiJ_G0004182.1 mouse_genomes_project 6 86946126 86983219 + 1600020E01Rik antisense antisense MGP_CASTEiJ_T0004875.1 MGP_CASTEiJ_G0004182.1 mouse_genomes_project 6 86946150 86983219 + 1600020E01Rik antisense antisense MGP_CASTEiJ_T0004876.1 MGP_CASTEiJ_G0004182.1 mouse_genomes_project 6 86946688 87000787 + 1600020E01Rik antisense antisense MGP_CASTEiJ_T0004877.1 MGP_CASTEiJ_G0004182.1 mouse_genomes_project 6 86947197 86983219 + 1600020E01Rik antisense antisense MGP_CASTEiJ_T0004878.1 MGP_CASTEiJ_G0004182.1 mouse_genomes_project 6 86947279 86983218 + 1600020E01Rik antisense antisense MGP_CASTEiJ_T0004879.1 MGP_CASTEiJ_G0004182.1 mouse_genomes_project 6 86947352 86982281 + 1600020E01Rik antisense antisense MGP_CASTEiJ_T0004880.1 MGP_CASTEiJ_G0004182.1 mouse_genomes_project 6 86967163 87001217 + 1600020E01Rik antisense antisense MGP_CASTEiJ_T0076560.1 MGP_CASTEiJ_G0029564.1 mouse_genomes_project 6 13721426 13757977 - MGP_CASTEiJ_P0076560 Tfec protein_coding protein_coding MGP_CASTEiJ_T0076561.1 MGP_CASTEiJ_G0029564.1 mouse_genomes_project 6 13721431 13790285 - MGP_CASTEiJ_P0076561 Tfec protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0076562.1 MGP_CASTEiJ_G0029564.1 mouse_genomes_project 6 13722735 13723307 - MGP_CASTEiJ_P0076562 Tfec protein_coding protein_coding MGP_CASTEiJ_T0076563.1 MGP_CASTEiJ_G0029564.1 mouse_genomes_project 6 13729436 13790327 - Tfec protein_coding retained_intron MGP_CASTEiJ_T0076564.1 MGP_CASTEiJ_G0029564.1 mouse_genomes_project 6 13732219 13734028 - Tfec protein_coding retained_intron MGP_CASTEiJ_T0011335.1 MGP_CASTEiJ_G0009523.1 mouse_genomes_project 6 117271759 117272009 - Gm27853 misc_RNA misc_RNA MGP_CASTEiJ_T0001929.1 MGP_CASTEiJ_G0001850.1 mouse_genomes_project 6 57554099 57556213 + TEC TEC MGP_CASTEiJ_T0077803.1 MGP_CASTEiJ_G0029846.1 mouse_genomes_project 6 50608324 50612031 - MGP_CASTEiJ_P0077803 Hoxa11 protein_coding protein_coding MGP_CASTEiJ_T0077804.1 MGP_CASTEiJ_G0029846.1 mouse_genomes_project 6 50608328 50612016 - Hoxa11 protein_coding processed_transcript MGP_CASTEiJ_T0002099.1 MGP_CASTEiJ_G0002019.1 mouse_genomes_project 6 142501276 142502965 + TEC TEC MGP_CASTEiJ_T0008424.1 MGP_CASTEiJ_G0006826.1 mouse_genomes_project 6 81960246 81968354 - 1700009C05Rik lincRNA lincRNA MGP_CASTEiJ_T0004994.1 MGP_CASTEiJ_G0004272.1 mouse_genomes_project 6 152083931 152086182 + 3010003L21Rik antisense antisense MGP_CASTEiJ_T0004995.1 MGP_CASTEiJ_G0004272.1 mouse_genomes_project 6 152083931 152086190 + 3010003L21Rik antisense antisense MGP_CASTEiJ_T0078605.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84061289 84123778 + MGP_CASTEiJ_P0078605 Zfp638 protein_coding protein_coding MGP_CASTEiJ_T0078606.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84061290 84139495 + MGP_CASTEiJ_P0078606 Zfp638 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078607.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84109089 84186865 + MGP_CASTEiJ_P0078607 Zfp638 protein_coding protein_coding MGP_CASTEiJ_T0078608.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84109093 84139471 + Zfp638 protein_coding processed_transcript MGP_CASTEiJ_T0078609.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84109093 84126500 + Zfp638 protein_coding retained_intron MGP_CASTEiJ_T0078610.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84109095 84153242 + MGP_CASTEiJ_P0078610 Zfp638 protein_coding protein_coding MGP_CASTEiJ_T0078611.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84109096 84162390 + MGP_CASTEiJ_P0078611 Zfp638 protein_coding protein_coding MGP_CASTEiJ_T0078612.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84109112 84184286 + MGP_CASTEiJ_P0078612 Zfp638 protein_coding protein_coding MGP_CASTEiJ_T0078613.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84109112 84184284 + MGP_CASTEiJ_P0078613 Zfp638 protein_coding protein_coding MGP_CASTEiJ_T0078614.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84109114 84184066 + MGP_CASTEiJ_P0078614 Zfp638 protein_coding protein_coding MGP_CASTEiJ_T0078615.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84109117 84110619 + Zfp638 protein_coding retained_intron MGP_CASTEiJ_T0078616.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84109119 84139507 + Zfp638 protein_coding processed_transcript MGP_CASTEiJ_T0078617.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84123510 84184038 + MGP_CASTEiJ_P0078617 Zfp638 protein_coding protein_coding MGP_CASTEiJ_T0078618.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84123510 84184286 + MGP_CASTEiJ_P0078618 Zfp638 protein_coding protein_coding MGP_CASTEiJ_T0078619.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84139110 84141192 + Zfp638 protein_coding retained_intron MGP_CASTEiJ_T0078620.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84144379 84166083 + MGP_CASTEiJ_P0078620 Zfp638 protein_coding protein_coding MGP_CASTEiJ_T0078621.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84158906 84163703 + Zfp638 protein_coding retained_intron MGP_CASTEiJ_T0078622.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84162445 84164676 + Zfp638 protein_coding retained_intron MGP_CASTEiJ_T0078623.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84176469 84179256 + Zfp638 protein_coding retained_intron MGP_CASTEiJ_T0078624.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84181016 84184284 + Zfp638 protein_coding retained_intron MGP_CASTEiJ_T0078625.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84181016 84183988 + Zfp638 protein_coding retained_intron MGP_CASTEiJ_T0078626.1 MGP_CASTEiJ_G0030031.1 mouse_genomes_project 6 84181768 84184032 + Zfp638 protein_coding retained_intron MGP_CASTEiJ_T0076909.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27396066 27507751 + MGP_CASTEiJ_P0076909 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0076910.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27396069 27447614 + MGP_CASTEiJ_P0076910 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0076911.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27396080 27507472 + MGP_CASTEiJ_P0076911 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0076912.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27396107 27447947 + Nrf1 protein_coding retained_intron MGP_CASTEiJ_T0076913.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27396109 27498309 + MGP_CASTEiJ_P0076913 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0076914.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27396120 27444402 + MGP_CASTEiJ_P0076914 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0076915.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27396123 27506815 + MGP_CASTEiJ_P0076915 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0076916.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27396145 27506810 + MGP_CASTEiJ_P0076916 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0076917.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27396150 27483498 + MGP_CASTEiJ_P0076917 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0076918.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27396150 27498646 + MGP_CASTEiJ_P0076918 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0076919.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27396229 27438656 + MGP_CASTEiJ_P0076919 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0076920.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27426130 27483141 + MGP_CASTEiJ_P0076920 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0076921.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27438506 27498304 + MGP_CASTEiJ_P0076921 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0076922.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27438512 27505966 + MGP_CASTEiJ_P0076922 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0076923.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27438512 27482779 + MGP_CASTEiJ_P0076923 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0076924.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27438512 27482779 + MGP_CASTEiJ_P0076924 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0076925.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27438512 27498304 + MGP_CASTEiJ_P0076925 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0076926.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27438551 27439773 + Nrf1 protein_coding retained_intron MGP_CASTEiJ_T0076927.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27446819 27469839 + Nrf1 protein_coding processed_transcript MGP_CASTEiJ_T0076928.1 MGP_CASTEiJ_G0029631.1 mouse_genomes_project 6 27469827 27494348 + MGP_CASTEiJ_P0076928 Nrf1 protein_coding protein_coding MGP_CASTEiJ_T0102408.1 MGP_CASTEiJ_G0039133.1 mouse_genomes_project 6 85419295 85424678 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002098.1 MGP_CASTEiJ_G0002018.1 mouse_genomes_project 6 142317013 142318293 - TEC TEC MGP_CASTEiJ_T0002036.1 MGP_CASTEiJ_G0001957.1 mouse_genomes_project 6 102459929 102462800 - TEC TEC MGP_CASTEiJ_T0001931.1 MGP_CASTEiJ_G0001852.1 mouse_genomes_project 6 61136230 61138262 + TEC TEC MGP_CASTEiJ_T0102394.1 MGP_CASTEiJ_G0039119.1 mouse_genomes_project 6 56613805 56614717 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0014856.1 MGP_CASTEiJ_G0013019.1 mouse_genomes_project 6 64733279 64735053 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004843.1 MGP_CASTEiJ_G0004164.1 mouse_genomes_project 6 72300640 72309434 + Gm15401 antisense antisense MGP_CASTEiJ_T0004844.1 MGP_CASTEiJ_G0004164.1 mouse_genomes_project 6 72308354 72309822 + Gm15401 antisense antisense MGP_CASTEiJ_T0014813.1 MGP_CASTEiJ_G0012976.1 mouse_genomes_project 6 48979945 48981073 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079760.1 MGP_CASTEiJ_G0030249.1 mouse_genomes_project 6 117547451 117740613 - MGP_CASTEiJ_P0079760 Tmcc1 protein_coding protein_coding MGP_CASTEiJ_T0079761.1 MGP_CASTEiJ_G0030249.1 mouse_genomes_project 6 117547754 117740559 - MGP_CASTEiJ_P0079761 Tmcc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0079762.1 MGP_CASTEiJ_G0030249.1 mouse_genomes_project 6 117575713 117675077 - MGP_CASTEiJ_P0079762 Tmcc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079763.1 MGP_CASTEiJ_G0030249.1 mouse_genomes_project 6 117585341 117591594 - Tmcc1 protein_coding retained_intron MGP_CASTEiJ_T0079764.1 MGP_CASTEiJ_G0030249.1 mouse_genomes_project 6 117643344 117648803 - Tmcc1 protein_coding retained_intron MGP_CASTEiJ_T0079765.1 MGP_CASTEiJ_G0030249.1 mouse_genomes_project 6 117672703 117715384 - MGP_CASTEiJ_P0079765 Tmcc1 protein_coding protein_coding MGP_CASTEiJ_T0079766.1 MGP_CASTEiJ_G0030249.1 mouse_genomes_project 6 117674693 117676288 - Tmcc1 protein_coding retained_intron MGP_CASTEiJ_T0000205.1 MGP_CASTEiJ_G0000155.1 mouse_genomes_project 6 69695040 69695696 + MGP_CASTEiJ_P0000205 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000206.1 MGP_CASTEiJ_G0000155.1 mouse_genomes_project 6 69695068 69695696 + MGP_CASTEiJ_P0000206 IG_V_gene IG_V_gene MGP_CASTEiJ_T0002636.1 MGP_CASTEiJ_G0002526.1 mouse_genomes_project 6 38963713 38964002 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0077897.1 MGP_CASTEiJ_G0029865.1 mouse_genomes_project 6 53547149 53589628 + MGP_CASTEiJ_P0077897 Gars protein_coding protein_coding MGP_CASTEiJ_T0077898.1 MGP_CASTEiJ_G0029865.1 mouse_genomes_project 6 53547293 53589531 + MGP_CASTEiJ_P0077898 Gars protein_coding unknown_likely_coding MGP_CASTEiJ_T0077899.1 MGP_CASTEiJ_G0029865.1 mouse_genomes_project 6 53557158 53561673 + Gars protein_coding retained_intron MGP_CASTEiJ_T0077900.1 MGP_CASTEiJ_G0029865.1 mouse_genomes_project 6 53560801 53571562 + Gars protein_coding retained_intron MGP_CASTEiJ_T0014948.1 MGP_CASTEiJ_G0013111.1 mouse_genomes_project 6 95723338 95723773 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004867.1 MGP_CASTEiJ_G0004177.1 mouse_genomes_project 6 85161550 85165424 + Gm44012 antisense antisense MGP_CASTEiJ_T0102407.1 MGP_CASTEiJ_G0039132.1 mouse_genomes_project 6 73129316 73130220 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0017517.1 MGP_CASTEiJ_G0014948.1 mouse_genomes_project 6 52423549 52466910 + 4921529L05Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017518.1 MGP_CASTEiJ_G0014948.1 mouse_genomes_project 6 52423559 52426676 + 4921529L05Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017519.1 MGP_CASTEiJ_G0014948.1 mouse_genomes_project 6 52423587 52459370 + 4921529L05Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017520.1 MGP_CASTEiJ_G0014948.1 mouse_genomes_project 6 52459295 52467553 + 4921529L05Rik processed_transcript processed_transcript MGP_CASTEiJ_T0014731.1 MGP_CASTEiJ_G0012894.1 mouse_genomes_project 6 10889395 10889700 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004938.1 MGP_CASTEiJ_G0004223.1 mouse_genomes_project 6 122789869 122825263 + Gm43915 antisense antisense MGP_CASTEiJ_T0080868.1 MGP_CASTEiJ_G0030502.1 mouse_genomes_project 6 139437321 139442331 - MGP_CASTEiJ_P0080868 Mgp protein_coding protein_coding MGP_CASTEiJ_T0080869.1 MGP_CASTEiJ_G0030502.1 mouse_genomes_project 6 139440195 139442289 - Mgp protein_coding retained_intron MGP_CASTEiJ_T0080452.1 MGP_CASTEiJ_G0030382.1 mouse_genomes_project 6 127716579 127763818 + MGP_CASTEiJ_P0080452 Vwf protein_coding protein_coding MGP_CASTEiJ_T0080453.1 MGP_CASTEiJ_G0030382.1 mouse_genomes_project 6 127722509 127863435 + MGP_CASTEiJ_P0080453 Vwf protein_coding protein_coding MGP_CASTEiJ_T0080454.1 MGP_CASTEiJ_G0030382.1 mouse_genomes_project 6 127722524 127776506 + Vwf protein_coding retained_intron MGP_CASTEiJ_T0080455.1 MGP_CASTEiJ_G0030382.1 mouse_genomes_project 6 127722524 127764111 + MGP_CASTEiJ_P0080455 Vwf protein_coding protein_coding MGP_CASTEiJ_T0080456.1 MGP_CASTEiJ_G0030382.1 mouse_genomes_project 6 127736024 127747614 + Vwf protein_coding processed_transcript MGP_CASTEiJ_T0080457.1 MGP_CASTEiJ_G0030382.1 mouse_genomes_project 6 127775279 127816591 + Vwf protein_coding processed_transcript MGP_CASTEiJ_T0080458.1 MGP_CASTEiJ_G0030382.1 mouse_genomes_project 6 127807247 127809557 + Vwf protein_coding retained_intron MGP_CASTEiJ_T0080459.1 MGP_CASTEiJ_G0030382.1 mouse_genomes_project 6 127820005 127835664 + Vwf protein_coding retained_intron MGP_CASTEiJ_T0080460.1 MGP_CASTEiJ_G0030382.1 mouse_genomes_project 6 127822935 127863428 + MGP_CASTEiJ_P0080460 Vwf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080461.1 MGP_CASTEiJ_G0030382.1 mouse_genomes_project 6 127828628 127830325 + Vwf protein_coding retained_intron MGP_CASTEiJ_T0080462.1 MGP_CASTEiJ_G0030382.1 mouse_genomes_project 6 127862492 127863391 + Vwf protein_coding processed_transcript MGP_CASTEiJ_T0098636.1 MGP_CASTEiJ_G0035567.1 mouse_genomes_project 6 135011414 135011535 - n-R5s167 rRNA rRNA MGP_CASTEiJ_T0000154.1 MGP_CASTEiJ_G0000117.1 mouse_genomes_project 6 67434199 67434673 - MGP_CASTEiJ_P0000154 Igkv9-120 IG_V_gene IG_V_gene MGP_CASTEiJ_T0078689.1 MGP_CASTEiJ_G0030043.1 mouse_genomes_project 6 85748301 85765263 + MGP_CASTEiJ_P0078689 Cct7 protein_coding protein_coding MGP_CASTEiJ_T0078690.1 MGP_CASTEiJ_G0030043.1 mouse_genomes_project 6 85748806 85752690 + Cct7 protein_coding retained_intron MGP_CASTEiJ_T0078691.1 MGP_CASTEiJ_G0030043.1 mouse_genomes_project 6 85748839 85765070 + MGP_CASTEiJ_P0078691 Cct7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078692.1 MGP_CASTEiJ_G0030043.1 mouse_genomes_project 6 85748879 85765070 + MGP_CASTEiJ_P0078692 Cct7 protein_coding protein_coding MGP_CASTEiJ_T0078693.1 MGP_CASTEiJ_G0030043.1 mouse_genomes_project 6 85749007 85765182 + MGP_CASTEiJ_P0078693 Cct7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0078694.1 MGP_CASTEiJ_G0030043.1 mouse_genomes_project 6 85757525 85761698 + Cct7 protein_coding retained_intron MGP_CASTEiJ_T0078695.1 MGP_CASTEiJ_G0030043.1 mouse_genomes_project 6 85758558 85762725 + Cct7 protein_coding retained_intron MGP_CASTEiJ_T0078696.1 MGP_CASTEiJ_G0030043.1 mouse_genomes_project 6 85758939 85762876 + MGP_CASTEiJ_P0078696 Cct7 protein_coding protein_coding MGP_CASTEiJ_T0011501.1 MGP_CASTEiJ_G0009667.1 mouse_genomes_project 6 131958884 131970422 - MGP_CASTEiJ_P0011501 Clec7a polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0011502.1 MGP_CASTEiJ_G0009667.1 mouse_genomes_project 6 131958884 131970427 - MGP_CASTEiJ_P0011502 Clec7a polymorphic_pseudogene protein_coding MGP_CASTEiJ_T0011503.1 MGP_CASTEiJ_G0009667.1 mouse_genomes_project 6 131960327 131970427 - MGP_CASTEiJ_P0011503 Clec7a polymorphic_pseudogene protein_coding MGP_CASTEiJ_T0011504.1 MGP_CASTEiJ_G0009667.1 mouse_genomes_project 6 131967158 131970429 - Clec7a polymorphic_pseudogene retained_intron MGP_CASTEiJ_T0080647.1 MGP_CASTEiJ_G0009667.1 mouse_genomes_project 6 131958880 131970334 - MGP_CASTEiJ_P0080647 Clec7a polymorphic_pseudogene unknown_likely_coding MGP_CASTEiJ_T0014761.1 MGP_CASTEiJ_G0012924.1 mouse_genomes_project 6 30065867 30066101 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078028.1 MGP_CASTEiJ_G0029909.1 mouse_genomes_project 6 57403357 57416780 + MGP_CASTEiJ_P0078028 Herc3 protein_coding protein_coding MGP_CASTEiJ_T0078029.1 MGP_CASTEiJ_G0029909.1 mouse_genomes_project 6 57403395 57416766 + MGP_CASTEiJ_P0078029 Herc3 protein_coding protein_coding MGP_CASTEiJ_T0078030.1 MGP_CASTEiJ_G0029909.1 mouse_genomes_project 6 57403416 57427884 + MGP_CASTEiJ_P0078030 Herc3 protein_coding protein_coding MGP_CASTEiJ_T0078031.1 MGP_CASTEiJ_G0029909.1 mouse_genomes_project 6 57403640 57427888 + MGP_CASTEiJ_P0078031 Herc3 protein_coding protein_coding MGP_CASTEiJ_T0078032.1 MGP_CASTEiJ_G0029909.1 mouse_genomes_project 6 57403753 57479528 + MGP_CASTEiJ_P0078032 Herc3 protein_coding protein_coding MGP_CASTEiJ_T0078033.1 MGP_CASTEiJ_G0029909.1 mouse_genomes_project 6 57405593 57498910 + MGP_CASTEiJ_P0078033 Herc3 protein_coding protein_coding MGP_CASTEiJ_T0078034.1 MGP_CASTEiJ_G0029909.1 mouse_genomes_project 6 57435790 57447557 + Herc3 protein_coding retained_intron MGP_CASTEiJ_T0078035.1 MGP_CASTEiJ_G0029909.1 mouse_genomes_project 6 57448155 57448855 + Herc3 protein_coding processed_transcript MGP_CASTEiJ_T0078036.1 MGP_CASTEiJ_G0029909.1 mouse_genomes_project 6 57463940 57476299 + MGP_CASTEiJ_P0078036 Herc3 protein_coding protein_coding MGP_CASTEiJ_T0078037.1 MGP_CASTEiJ_G0029909.1 mouse_genomes_project 6 57475495 57480854 + Herc3 protein_coding retained_intron MGP_CASTEiJ_T0078040.1 MGP_CASTEiJ_G0029909.1 mouse_genomes_project 6 57483610 57495321 + Herc3 protein_coding processed_transcript MGP_CASTEiJ_T0011320.1 MGP_CASTEiJ_G0009508.1 mouse_genomes_project 6 50631643 50632011 + Gm27985 misc_RNA misc_RNA MGP_CASTEiJ_T0002023.1 MGP_CASTEiJ_G0001944.1 mouse_genomes_project 6 94210145 94210628 - TEC TEC MGP_CASTEiJ_T0080509.1 MGP_CASTEiJ_G0030394.1 mouse_genomes_project 6 129310338 129320273 + MGP_CASTEiJ_P0080509 Fgf23 protein_coding protein_coding MGP_CASTEiJ_T0099957.1 MGP_CASTEiJ_G0036870.1 mouse_genomes_project 6 66399437 66399571 + Gm25260 snRNA snRNA MGP_CASTEiJ_T0081093.1 MGP_CASTEiJ_G0030545.1 mouse_genomes_project 6 146046198 146101261 + MGP_CASTEiJ_P0081093 Etnk1 protein_coding protein_coding MGP_CASTEiJ_T0081094.1 MGP_CASTEiJ_G0030545.1 mouse_genomes_project 6 146046207 146091318 + MGP_CASTEiJ_P0081094 Etnk1 protein_coding protein_coding MGP_CASTEiJ_T0081095.1 MGP_CASTEiJ_G0030545.1 mouse_genomes_project 6 146046231 146074059 + Etnk1 protein_coding retained_intron MGP_CASTEiJ_T0081096.1 MGP_CASTEiJ_G0030545.1 mouse_genomes_project 6 146046231 146116793 + MGP_CASTEiJ_P0081096 Etnk1 protein_coding protein_coding MGP_CASTEiJ_T0081097.1 MGP_CASTEiJ_G0030545.1 mouse_genomes_project 6 146046336 146080829 + MGP_CASTEiJ_P0081097 Etnk1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0014810.1 MGP_CASTEiJ_G0012973.1 mouse_genomes_project 6 47708903 47709649 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080571.1 MGP_CASTEiJ_G0030406.1 mouse_genomes_project 6 130762222 130773493 + MGP_CASTEiJ_P0080571 4933413G19Rik protein_coding protein_coding MGP_CASTEiJ_T0080572.1 MGP_CASTEiJ_G0030406.1 mouse_genomes_project 6 130762222 130772829 + MGP_CASTEiJ_P0080572 4933413G19Rik protein_coding protein_coding MGP_CASTEiJ_T0002641.1 MGP_CASTEiJ_G0002531.1 mouse_genomes_project 6 39106869 39107336 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0102397.1 MGP_CASTEiJ_G0039122.1 mouse_genomes_project 6 56667661 56667766 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102399.1 MGP_CASTEiJ_G0039124.1 mouse_genomes_project 6 56750042 56750968 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0079271.1 MGP_CASTEiJ_G0030164.1 mouse_genomes_project 6 98178047 98182280 - Frmd4b protein_coding retained_intron MGP_CASTEiJ_T0079272.1 MGP_CASTEiJ_G0030164.1 mouse_genomes_project 6 98178097 98205687 - Frmd4b protein_coding processed_transcript MGP_CASTEiJ_T0079273.1 MGP_CASTEiJ_G0030164.1 mouse_genomes_project 6 98178103 98354123 - MGP_CASTEiJ_P0079273 Frmd4b protein_coding protein_coding MGP_CASTEiJ_T0079274.1 MGP_CASTEiJ_G0030164.1 mouse_genomes_project 6 98179375 98384935 - MGP_CASTEiJ_P0079274 Frmd4b protein_coding protein_coding MGP_CASTEiJ_T0079275.1 MGP_CASTEiJ_G0030164.1 mouse_genomes_project 6 98198188 98205737 - Frmd4b protein_coding retained_intron MGP_CASTEiJ_T0079276.1 MGP_CASTEiJ_G0030164.1 mouse_genomes_project 6 98200671 98218736 - Frmd4b protein_coding processed_transcript MGP_CASTEiJ_T0079277.1 MGP_CASTEiJ_G0030164.1 mouse_genomes_project 6 98201221 98249306 - Frmd4b protein_coding retained_intron MGP_CASTEiJ_T0079278.1 MGP_CASTEiJ_G0030164.1 mouse_genomes_project 6 98218253 98287711 - Frmd4b protein_coding processed_transcript MGP_CASTEiJ_T0079279.1 MGP_CASTEiJ_G0030164.1 mouse_genomes_project 6 98218911 98384984 - Frmd4b protein_coding processed_transcript MGP_CASTEiJ_T0079280.1 MGP_CASTEiJ_G0030164.1 mouse_genomes_project 6 98246066 98525777 - Frmd4b protein_coding retained_intron MGP_CASTEiJ_T0079281.1 MGP_CASTEiJ_G0030164.1 mouse_genomes_project 6 98286761 98287679 - Frmd4b protein_coding retained_intron MGP_CASTEiJ_T0079282.1 MGP_CASTEiJ_G0030164.1 mouse_genomes_project 6 98287229 98323646 - MGP_CASTEiJ_P0079282 Frmd4b protein_coding protein_coding MGP_CASTEiJ_T0077758.1 MGP_CASTEiJ_G0029832.1 mouse_genomes_project 6 49762645 49781030 + MGP_CASTEiJ_P0077758 Cbx3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0077759.1 MGP_CASTEiJ_G0029832.1 mouse_genomes_project 6 49763212 49772070 + Cbx3 protein_coding retained_intron MGP_CASTEiJ_T0077760.1 MGP_CASTEiJ_G0029832.1 mouse_genomes_project 6 49763226 49764611 + Cbx3 protein_coding retained_intron MGP_CASTEiJ_T0077761.1 MGP_CASTEiJ_G0029832.1 mouse_genomes_project 6 49763295 49777027 + MGP_CASTEiJ_P0077761 Cbx3 protein_coding protein_coding MGP_CASTEiJ_T0077762.1 MGP_CASTEiJ_G0029832.1 mouse_genomes_project 6 49775980 49778814 + Cbx3 protein_coding retained_intron MGP_CASTEiJ_T0014716.1 MGP_CASTEiJ_G0012879.1 mouse_genomes_project 6 4634375 4634763 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0079049.1 MGP_CASTEiJ_G0030112.1 mouse_genomes_project 6 90432367 90433465 - MGP_CASTEiJ_P0079049 Vmn1r42 protein_coding protein_coding MGP_CASTEiJ_T0099962.1 MGP_CASTEiJ_G0036875.1 mouse_genomes_project 6 83907106 83907203 + Gm25054 snRNA snRNA MGP_CASTEiJ_T0004966.1 MGP_CASTEiJ_G0004248.1 mouse_genomes_project 6 137567963 137574532 + Gm19434 antisense antisense MGP_CASTEiJ_T0079628.1 MGP_CASTEiJ_G0030226.1 mouse_genomes_project 6 115696927 115824898 + MGP_CASTEiJ_P0079628 Slc6a11 protein_coding protein_coding MGP_CASTEiJ_T0079629.1 MGP_CASTEiJ_G0030226.1 mouse_genomes_project 6 115697105 115698120 + Slc6a11 protein_coding retained_intron MGP_CASTEiJ_T0080873.1 MGP_CASTEiJ_G0030504.1 mouse_genomes_project 6 139496895 139516009 - MGP_CASTEiJ_P0080873 Arhgdib protein_coding protein_coding MGP_CASTEiJ_T0080874.1 MGP_CASTEiJ_G0030504.1 mouse_genomes_project 6 139496895 139516259 - MGP_CASTEiJ_P0080874 Arhgdib protein_coding protein_coding MGP_CASTEiJ_T0080876.1 MGP_CASTEiJ_G0030504.1 mouse_genomes_project 6 139497247 139516381 - MGP_CASTEiJ_P0080876 Arhgdib protein_coding protein_coding MGP_CASTEiJ_T0080877.1 MGP_CASTEiJ_G0030504.1 mouse_genomes_project 6 139497458 139516350 - MGP_CASTEiJ_P0080877 Arhgdib protein_coding protein_coding MGP_CASTEiJ_T0080878.1 MGP_CASTEiJ_G0030504.1 mouse_genomes_project 6 139506951 139514033 - MGP_CASTEiJ_P0080878 Arhgdib protein_coding protein_coding MGP_CASTEiJ_T0099948.1 MGP_CASTEiJ_G0036861.1 mouse_genomes_project 6 39443434 39443496 - Gm27549 snRNA snRNA MGP_CASTEiJ_T0101163.1 MGP_CASTEiJ_G0038076.1 mouse_genomes_project 6 37224629 37224760 - Gm25402 snoRNA snoRNA MGP_CASTEiJ_T0102377.1 MGP_CASTEiJ_G0039102.1 mouse_genomes_project 6 39246890 39249789 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0081132.1 MGP_CASTEiJ_G0030549.1 mouse_genomes_project 6 148166552 148196972 - Casc1 protein_coding retained_intron MGP_CASTEiJ_T0081133.1 MGP_CASTEiJ_G0030549.1 mouse_genomes_project 6 148166552 148202900 - MGP_CASTEiJ_P0081133 Casc1 protein_coding protein_coding MGP_CASTEiJ_T0081134.1 MGP_CASTEiJ_G0030549.1 mouse_genomes_project 6 148166552 148202721 - MGP_CASTEiJ_P0081134 Casc1 protein_coding protein_coding MGP_CASTEiJ_T0081135.1 MGP_CASTEiJ_G0030549.1 mouse_genomes_project 6 148166660 148202804 - MGP_CASTEiJ_P0081135 Casc1 protein_coding protein_coding MGP_CASTEiJ_T0081136.1 MGP_CASTEiJ_G0030549.1 mouse_genomes_project 6 148181940 148202829 - Casc1 protein_coding retained_intron MGP_CASTEiJ_T0081137.1 MGP_CASTEiJ_G0030549.1 mouse_genomes_project 6 148184562 148202799 - Casc1 protein_coding processed_transcript MGP_CASTEiJ_T0081138.1 MGP_CASTEiJ_G0030549.1 mouse_genomes_project 6 148194519 148202809 - Casc1 protein_coding retained_intron MGP_CASTEiJ_T0081139.1 MGP_CASTEiJ_G0030549.1 mouse_genomes_project 6 148195890 148202839 - Casc1 protein_coding retained_intron MGP_CASTEiJ_T0081140.1 MGP_CASTEiJ_G0030549.1 mouse_genomes_project 6 148199603 148202935 - Casc1 protein_coding retained_intron MGP_CASTEiJ_T0001943.1 MGP_CASTEiJ_G0001864.1 mouse_genomes_project 6 72272391 72274912 - TEC TEC MGP_CASTEiJ_T0080388.1 MGP_CASTEiJ_G0030368.1 mouse_genomes_project 6 127261281 127273984 + MGP_CASTEiJ_P0080388 Nop2 protein_coding protein_coding MGP_CASTEiJ_T0080389.1 MGP_CASTEiJ_G0030368.1 mouse_genomes_project 6 127261419 127264074 + MGP_CASTEiJ_P0080389 Nop2 protein_coding protein_coding MGP_CASTEiJ_T0078073.1 MGP_CASTEiJ_G0029918.1 mouse_genomes_project 6 64030302 64032426 + MGP_CASTEiJ_P0078073 Atoh1 protein_coding protein_coding MGP_CASTEiJ_T0001970.1 MGP_CASTEiJ_G0001891.1 mouse_genomes_project 6 82375876 82380011 - TEC TEC MGP_CASTEiJ_T0077383.1 MGP_CASTEiJ_G0029734.1 mouse_genomes_project 6 39532519 39550511 - MGP_CASTEiJ_P0077383 Kel protein_coding protein_coding MGP_CASTEiJ_T0077384.1 MGP_CASTEiJ_G0029734.1 mouse_genomes_project 6 39532524 39534175 - MGP_CASTEiJ_P0077384 Kel protein_coding protein_coding MGP_CASTEiJ_T0077385.1 MGP_CASTEiJ_G0029734.1 mouse_genomes_project 6 39532543 39534034 - Kel protein_coding processed_transcript MGP_CASTEiJ_T0077386.1 MGP_CASTEiJ_G0029734.1 mouse_genomes_project 6 39534201 39545281 - MGP_CASTEiJ_P0077386 Kel protein_coding protein_coding MGP_CASTEiJ_T0077387.1 MGP_CASTEiJ_G0029734.1 mouse_genomes_project 6 39534616 39535142 - Kel protein_coding retained_intron MGP_CASTEiJ_T0014944.1 MGP_CASTEiJ_G0013107.1 mouse_genomes_project 6 95269690 95270136 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0078751.1 MGP_CASTEiJ_G0030059.1 mouse_genomes_project 6 86590268 86674304 + MGP_CASTEiJ_P0078751 Tgfa protein_coding protein_coding MGP_CASTEiJ_T0078752.1 MGP_CASTEiJ_G0030059.1 mouse_genomes_project 6 86590296 86604962 + Tgfa protein_coding processed_transcript MGP_CASTEiJ_T0078753.1 MGP_CASTEiJ_G0030059.1 mouse_genomes_project 6 86590435 86670627 + MGP_CASTEiJ_P0078753 Tgfa protein_coding protein_coding MGP_CASTEiJ_T0078754.1 MGP_CASTEiJ_G0030059.1 mouse_genomes_project 6 86606595 86670818 + Tgfa protein_coding processed_transcript MGP_CASTEiJ_T0005479.1 MGP_CASTEiJ_G0004624.1 mouse_genomes_project 6 88150219 88156462 + E230015B07Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0005480.1 MGP_CASTEiJ_G0004624.1 mouse_genomes_project 6 88150268 88158198 + E230015B07Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0005481.1 MGP_CASTEiJ_G0004624.1 mouse_genomes_project 6 88150268 88157411 + E230015B07Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0077158.1 MGP_CASTEiJ_G0029671.1 mouse_genomes_project 6 33943321 34090209 + MGP_CASTEiJ_P0077158 Chrm2 protein_coding protein_coding MGP_CASTEiJ_T0077159.1 MGP_CASTEiJ_G0029671.1 mouse_genomes_project 6 33943432 34005887 + Chrm2 protein_coding processed_transcript MGP_CASTEiJ_T0081045.1 MGP_CASTEiJ_G0030535.1 mouse_genomes_project 6 145212332 145225690 + MGP_CASTEiJ_P0081045 Golt1b protein_coding protein_coding MGP_CASTEiJ_T0081046.1 MGP_CASTEiJ_G0030535.1 mouse_genomes_project 6 145212364 145223558 + Golt1b protein_coding processed_transcript MGP_CASTEiJ_T0081022.1 MGP_CASTEiJ_G0030531.1 mouse_genomes_project 6 145047015 145089390 - MGP_CASTEiJ_P0081022 Slco1a5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081023.1 MGP_CASTEiJ_G0030531.1 mouse_genomes_project 6 145047015 145142626 - MGP_CASTEiJ_P0081023 Slco1a5 protein_coding protein_coding MGP_CASTEiJ_T0081024.1 MGP_CASTEiJ_G0030531.1 mouse_genomes_project 6 145047015 145095341 - MGP_CASTEiJ_P0081024 Slco1a5 protein_coding protein_coding MGP_CASTEiJ_T0081025.1 MGP_CASTEiJ_G0030531.1 mouse_genomes_project 6 145061125 145095341 - Slco1a5 protein_coding retained_intron MGP_CASTEiJ_T0081026.1 MGP_CASTEiJ_G0030531.1 mouse_genomes_project 6 145068567 145142593 - MGP_CASTEiJ_P0081026 Slco1a5 protein_coding protein_coding MGP_CASTEiJ_T0004810.1 MGP_CASTEiJ_G0004139.1 mouse_genomes_project 6 41155963 41157257 - Gm44731 antisense antisense MGP_CASTEiJ_T0080875.1 MGP_CASTEiJ_G0030505.1 mouse_genomes_project 6 139497072 139540815 + MGP_CASTEiJ_P0080875 Pde6h protein_coding protein_coding MGP_CASTEiJ_T0080879.1 MGP_CASTEiJ_G0030505.1 mouse_genomes_project 6 139532188 139546473 + MGP_CASTEiJ_P0080879 Pde6h protein_coding protein_coding MGP_CASTEiJ_T0080880.1 MGP_CASTEiJ_G0030505.1 mouse_genomes_project 6 139532198 139541060 + Pde6h protein_coding retained_intron MGP_CASTEiJ_T0080881.1 MGP_CASTEiJ_G0030505.1 mouse_genomes_project 6 139536855 139540846 + MGP_CASTEiJ_P0080881 Pde6h protein_coding protein_coding MGP_CASTEiJ_T0014834.1 MGP_CASTEiJ_G0012997.1 mouse_genomes_project 6 59254205 59255213 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014784.1 MGP_CASTEiJ_G0012947.1 mouse_genomes_project 6 41118154 41118576 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080962.1 MGP_CASTEiJ_G0030517.1 mouse_genomes_project 6 142561111 142696327 + MGP_CASTEiJ_P0080962 protein_coding protein_coding MGP_CASTEiJ_T0101704.1 MGP_CASTEiJ_G0038525.1 mouse_genomes_project 6 46612835 46640081 + transcribed_unitary_pseudogene processed_transcript MGP_CASTEiJ_T0101705.1 MGP_CASTEiJ_G0038525.1 mouse_genomes_project 6 46618730 46635688 + transcribed_unitary_pseudogene transcribed_unitary_pseudogene MGP_CASTEiJ_T0014782.1 MGP_CASTEiJ_G0012945.1 mouse_genomes_project 6 40383371 40384177 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0014910.1 MGP_CASTEiJ_G0013073.1 mouse_genomes_project 6 82995915 82997110 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008312.1 MGP_CASTEiJ_G0006745.1 mouse_genomes_project 6 23083997 23131338 + Gm20756 lincRNA lincRNA MGP_CASTEiJ_T0008313.1 MGP_CASTEiJ_G0006745.1 mouse_genomes_project 6 23107724 23111420 + Gm20756 lincRNA lincRNA MGP_CASTEiJ_T0102426.1 MGP_CASTEiJ_G0039151.1 mouse_genomes_project 6 132757174 132768813 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002639.1 MGP_CASTEiJ_G0002529.1 mouse_genomes_project 6 39054174 39054468 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0080855.1 MGP_CASTEiJ_G0030499.1 mouse_genomes_project 6 139354942 139368769 - MGP_CASTEiJ_P0080855 Wbp11 protein_coding protein_coding MGP_CASTEiJ_T0080856.1 MGP_CASTEiJ_G0030499.1 mouse_genomes_project 6 139357764 139362044 - MGP_CASTEiJ_P0080856 Wbp11 protein_coding protein_coding MGP_CASTEiJ_T0080857.1 MGP_CASTEiJ_G0030499.1 mouse_genomes_project 6 139357989 139368672 - MGP_CASTEiJ_P0080857 Wbp11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080858.1 MGP_CASTEiJ_G0030499.1 mouse_genomes_project 6 139360566 139368679 - Wbp11 protein_coding retained_intron MGP_CASTEiJ_T0080859.1 MGP_CASTEiJ_G0030499.1 mouse_genomes_project 6 139365077 139368671 - Wbp11 protein_coding retained_intron MGP_CASTEiJ_T0080860.1 MGP_CASTEiJ_G0030499.1 mouse_genomes_project 6 139365830 139366818 - Wbp11 protein_coding retained_intron MGP_CASTEiJ_T0080861.1 MGP_CASTEiJ_G0030499.1 mouse_genomes_project 6 139366238 139368272 - MGP_CASTEiJ_P0080861 Wbp11 protein_coding protein_coding MGP_CASTEiJ_T0079230.1 MGP_CASTEiJ_G0030152.1 mouse_genomes_project 6 95465947 95562798 - MGP_CASTEiJ_P0079230 Lrig1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0079231.1 MGP_CASTEiJ_G0030152.1 mouse_genomes_project 6 95465952 95562785 - MGP_CASTEiJ_P0079231 Lrig1 protein_coding protein_coding MGP_CASTEiJ_T0079232.1 MGP_CASTEiJ_G0030152.1 mouse_genomes_project 6 95465954 95562777 - MGP_CASTEiJ_P0079232 Lrig1 protein_coding protein_coding MGP_CASTEiJ_T0079233.1 MGP_CASTEiJ_G0030152.1 mouse_genomes_project 6 95466098 95466812 - Lrig1 protein_coding processed_transcript MGP_CASTEiJ_T0079234.1 MGP_CASTEiJ_G0030152.1 mouse_genomes_project 6 95486417 95543277 - Lrig1 protein_coding processed_transcript MGP_CASTEiJ_T0079235.1 MGP_CASTEiJ_G0030152.1 mouse_genomes_project 6 95487843 95518242 - Lrig1 protein_coding processed_transcript MGP_CASTEiJ_T0079236.1 MGP_CASTEiJ_G0030152.1 mouse_genomes_project 6 95489473 95541511 - Lrig1 protein_coding processed_transcript MGP_CASTEiJ_T0014978.1 MGP_CASTEiJ_G0013141.1 mouse_genomes_project 6 110452728 110453205 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081141.1 MGP_CASTEiJ_G0030550.1 mouse_genomes_project 6 148203063 148207737 + MGP_CASTEiJ_P0081141 Lyrm5 protein_coding protein_coding MGP_CASTEiJ_T0081142.1 MGP_CASTEiJ_G0030550.1 mouse_genomes_project 6 148203085 148208884 + MGP_CASTEiJ_P0081142 Lyrm5 protein_coding protein_coding MGP_CASTEiJ_T0081143.1 MGP_CASTEiJ_G0030550.1 mouse_genomes_project 6 148203085 148208484 + MGP_CASTEiJ_P0081143 Lyrm5 protein_coding protein_coding MGP_CASTEiJ_T0081144.1 MGP_CASTEiJ_G0030550.1 mouse_genomes_project 6 148203099 148206907 + Lyrm5 protein_coding processed_transcript MGP_CASTEiJ_T0081145.1 MGP_CASTEiJ_G0030550.1 mouse_genomes_project 6 148203104 148208484 + MGP_CASTEiJ_P0081145 Lyrm5 protein_coding protein_coding MGP_CASTEiJ_T0081146.1 MGP_CASTEiJ_G0030550.1 mouse_genomes_project 6 148203104 148207717 + MGP_CASTEiJ_P0081146 Lyrm5 protein_coding protein_coding MGP_CASTEiJ_T0081147.1 MGP_CASTEiJ_G0030550.1 mouse_genomes_project 6 148203115 148208484 + MGP_CASTEiJ_P0081147 Lyrm5 protein_coding protein_coding MGP_CASTEiJ_T0081148.1 MGP_CASTEiJ_G0030550.1 mouse_genomes_project 6 148203129 148207680 + MGP_CASTEiJ_P0081148 Lyrm5 protein_coding protein_coding MGP_CASTEiJ_T0011333.1 MGP_CASTEiJ_G0009521.1 mouse_genomes_project 6 113436909 113437224 + Gm26362 misc_RNA misc_RNA MGP_CASTEiJ_T0080020.1 MGP_CASTEiJ_G0030293.1 mouse_genomes_project 6 122304279 122329273 - MGP_CASTEiJ_P0080020 Cecr5 protein_coding protein_coding MGP_CASTEiJ_T0080021.1 MGP_CASTEiJ_G0030293.1 mouse_genomes_project 6 122316331 122329258 - Cecr5 protein_coding retained_intron MGP_CASTEiJ_T0080022.1 MGP_CASTEiJ_G0030293.1 mouse_genomes_project 6 122317208 122329244 - Cecr5 protein_coding retained_intron MGP_CASTEiJ_T0080023.1 MGP_CASTEiJ_G0030293.1 mouse_genomes_project 6 122327917 122329256 - Cecr5 protein_coding retained_intron MGP_CASTEiJ_T0000281.1 MGP_CASTEiJ_G0000230.1 mouse_genomes_project 6 68457905 68458299 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0014932.1 MGP_CASTEiJ_G0013095.1 mouse_genomes_project 6 89424366 89424889 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002107.1 MGP_CASTEiJ_G0002027.1 mouse_genomes_project 6 148231825 148234385 - TEC TEC MGP_CASTEiJ_T0004827.1 MGP_CASTEiJ_G0004149.1 mouse_genomes_project 6 52258827 52313049 + Gm43938 antisense antisense MGP_CASTEiJ_T0101194.1 MGP_CASTEiJ_G0038107.1 mouse_genomes_project 6 98448566 98448696 - Gm25852 snoRNA snoRNA MGP_CASTEiJ_T0077857.1 MGP_CASTEiJ_G0029856.1 mouse_genomes_project 6 52784514 52786585 + Prr15 protein_coding retained_intron MGP_CASTEiJ_T0077858.1 MGP_CASTEiJ_G0029856.1 mouse_genomes_project 6 52785560 52788877 + MGP_CASTEiJ_P0077858 Prr15 protein_coding protein_coding MGP_CASTEiJ_T0099984.1 MGP_CASTEiJ_G0036897.1 mouse_genomes_project 6 132385144 132385218 + Gm24712 snRNA snRNA MGP_CASTEiJ_T0014959.1 MGP_CASTEiJ_G0013122.1 mouse_genomes_project 6 101696546 101696968 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015029.1 MGP_CASTEiJ_G0013192.1 mouse_genomes_project 6 126382980 126383257 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080853.1 MGP_CASTEiJ_G0030498.1 mouse_genomes_project 6 139349545 139351372 + MGP_CASTEiJ_P0080853 H2afj protein_coding protein_coding MGP_CASTEiJ_T0080854.1 MGP_CASTEiJ_G0030498.1 mouse_genomes_project 6 139349634 139351086 + MGP_CASTEiJ_P0080854 H2afj protein_coding protein_coding MGP_CASTEiJ_T0101156.1 MGP_CASTEiJ_G0038069.1 mouse_genomes_project 6 22078273 22078404 - Gm22267 snoRNA snoRNA MGP_CASTEiJ_T0078479.1 MGP_CASTEiJ_G0030007.1 mouse_genomes_project 6 83238051 83238951 + MGP_CASTEiJ_P0078479 Mrpl53 protein_coding protein_coding MGP_CASTEiJ_T0078480.1 MGP_CASTEiJ_G0030007.1 mouse_genomes_project 6 83238131 83238951 + Mrpl53 protein_coding retained_intron MGP_CASTEiJ_T0008568.1 MGP_CASTEiJ_G0006933.1 mouse_genomes_project 6 152768360 152769278 + lincRNA lincRNA MGP_CASTEiJ_T0017501.1 MGP_CASTEiJ_G0014943.1 mouse_genomes_project 6 37339966 37356133 + 8030453O22Rik processed_transcript antisense MGP_CASTEiJ_T0017502.1 MGP_CASTEiJ_G0014943.1 mouse_genomes_project 6 37339975 37360645 + 8030453O22Rik processed_transcript antisense MGP_CASTEiJ_T0017503.1 MGP_CASTEiJ_G0014943.1 mouse_genomes_project 6 37339979 37340728 + 8030453O22Rik processed_transcript retained_intron MGP_CASTEiJ_T0101813.1 MGP_CASTEiJ_G0038578.1 mouse_genomes_project 6 133981463 134089878 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101814.1 MGP_CASTEiJ_G0038578.1 mouse_genomes_project 6 133981485 133984659 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0079849.1 MGP_CASTEiJ_G0030267.1 mouse_genomes_project 6 119500285 119528672 + MGP_CASTEiJ_P0079849 protein_coding protein_coding MGP_CASTEiJ_T0079850.1 MGP_CASTEiJ_G0030267.1 mouse_genomes_project 6 119507258 119528672 + MGP_CASTEiJ_P0079850 protein_coding protein_coding MGP_CASTEiJ_T0079851.1 MGP_CASTEiJ_G0030267.1 mouse_genomes_project 6 119507317 119526603 + MGP_CASTEiJ_P0079851 protein_coding protein_coding MGP_CASTEiJ_T0001907.1 MGP_CASTEiJ_G0001828.1 mouse_genomes_project 6 44044407 44048345 + TEC TEC MGP_CASTEiJ_T0102419.1 MGP_CASTEiJ_G0039144.1 mouse_genomes_project 6 126130586 126131490 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0014718.1 MGP_CASTEiJ_G0012881.1 mouse_genomes_project 6 5187862 5189657 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008553.1 MGP_CASTEiJ_G0006922.1 mouse_genomes_project 6 150245940 150273497 + E330012B07Rik lincRNA lincRNA MGP_CASTEiJ_T0008554.1 MGP_CASTEiJ_G0006922.1 mouse_genomes_project 6 150245958 150268048 + E330012B07Rik lincRNA lincRNA MGP_CASTEiJ_T0014771.1 MGP_CASTEiJ_G0012934.1 mouse_genomes_project 6 35532413 35533138 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0080438.1 MGP_CASTEiJ_G0030378.1 mouse_genomes_project 6 127476214 127485997 + MGP_CASTEiJ_P0080438 Scnn1a protein_coding protein_coding MGP_CASTEiJ_T0080439.1 MGP_CASTEiJ_G0030378.1 mouse_genomes_project 6 127476288 127499497 + MGP_CASTEiJ_P0080439 Scnn1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0080440.1 MGP_CASTEiJ_G0030378.1 mouse_genomes_project 6 127476530 127499720 + MGP_CASTEiJ_P0080440 Scnn1a protein_coding protein_coding MGP_CASTEiJ_T0080441.1 MGP_CASTEiJ_G0030378.1 mouse_genomes_project 6 127476890 127500057 + MGP_CASTEiJ_P0080441 Scnn1a protein_coding protein_coding MGP_CASTEiJ_T0077664.1 MGP_CASTEiJ_G0029812.1 mouse_genomes_project 6 46963481 46964893 + MGP_CASTEiJ_P0077664 Tmem176a protein_coding protein_coding MGP_CASTEiJ_T0077665.1 MGP_CASTEiJ_G0029812.1 mouse_genomes_project 6 46964074 46968418 + MGP_CASTEiJ_P0077665 Tmem176a protein_coding protein_coding MGP_CASTEiJ_T0077666.1 MGP_CASTEiJ_G0029812.1 mouse_genomes_project 6 46964084 46970819 + MGP_CASTEiJ_P0077666 Tmem176a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0077667.1 MGP_CASTEiJ_G0029812.1 mouse_genomes_project 6 46964110 46967909 + Tmem176a protein_coding retained_intron MGP_CASTEiJ_T0077668.1 MGP_CASTEiJ_G0029812.1 mouse_genomes_project 6 46964145 46967913 + MGP_CASTEiJ_P0077668 Tmem176a protein_coding protein_coding MGP_CASTEiJ_T0077669.1 MGP_CASTEiJ_G0029812.1 mouse_genomes_project 6 46964332 46967324 + MGP_CASTEiJ_P0077669 Tmem176a protein_coding protein_coding MGP_CASTEiJ_T0077670.1 MGP_CASTEiJ_G0029812.1 mouse_genomes_project 6 46965141 46966141 + MGP_CASTEiJ_P0077670 Tmem176a protein_coding protein_coding MGP_CASTEiJ_T0080340.1 MGP_CASTEiJ_G0030361.1 mouse_genomes_project 6 127080921 127088051 - MGP_CASTEiJ_P0080340 Cops7a protein_coding protein_coding MGP_CASTEiJ_T0080341.1 MGP_CASTEiJ_G0030361.1 mouse_genomes_project 6 127081324 127087961 - MGP_CASTEiJ_P0080341 Cops7a protein_coding protein_coding MGP_CASTEiJ_T0080342.1 MGP_CASTEiJ_G0030361.1 mouse_genomes_project 6 127081742 127082650 - Cops7a protein_coding retained_intron MGP_CASTEiJ_T0080343.1 MGP_CASTEiJ_G0030361.1 mouse_genomes_project 6 127082415 127087803 - MGP_CASTEiJ_P0080343 Cops7a protein_coding protein_coding MGP_CASTEiJ_T0080344.1 MGP_CASTEiJ_G0030361.1 mouse_genomes_project 6 127083668 127087921 - MGP_CASTEiJ_P0080344 Cops7a protein_coding protein_coding MGP_CASTEiJ_T0080345.1 MGP_CASTEiJ_G0030361.1 mouse_genomes_project 6 127085133 127087720 - MGP_CASTEiJ_P0080345 Cops7a protein_coding protein_coding MGP_CASTEiJ_T0080346.1 MGP_CASTEiJ_G0030361.1 mouse_genomes_project 6 127087066 127088025 - Cops7a protein_coding retained_intron MGP_CASTEiJ_T0008371.1 MGP_CASTEiJ_G0006782.1 mouse_genomes_project 6 46876611 46877780 - Gm44226 lincRNA lincRNA MGP_CASTEiJ_T0078195.1 MGP_CASTEiJ_G0029949.1 mouse_genomes_project 6 71113728 71131260 + Chmp3 protein_coding processed_transcript MGP_CASTEiJ_T0078196.1 MGP_CASTEiJ_G0029949.1 mouse_genomes_project 6 71113805 71150803 + MGP_CASTEiJ_P0078196 Chmp3 protein_coding protein_coding MGP_CASTEiJ_T0078197.1 MGP_CASTEiJ_G0029949.1 mouse_genomes_project 6 71113805 71131279 + MGP_CASTEiJ_P0078197 Chmp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0078198.1 MGP_CASTEiJ_G0029949.1 mouse_genomes_project 6 71113865 71157935 + MGP_CASTEiJ_P0078198 Chmp3 protein_coding protein_coding MGP_CASTEiJ_T0078199.1 MGP_CASTEiJ_G0029949.1 mouse_genomes_project 6 71114229 71147135 + Chmp3 protein_coding processed_transcript MGP_CASTEiJ_T0078200.1 MGP_CASTEiJ_G0029949.1 mouse_genomes_project 6 71150599 71152824 + Chmp3 protein_coding retained_intron MGP_CASTEiJ_T0077113.1 MGP_CASTEiJ_G0029662.1 mouse_genomes_project 6 32411163 32417424 - MGP_CASTEiJ_P0077113 3110062M04Rik protein_coding protein_coding MGP_CASTEiJ_T0077114.1 MGP_CASTEiJ_G0029662.1 mouse_genomes_project 6 32411232 32417463 - MGP_CASTEiJ_P0077114 3110062M04Rik protein_coding protein_coding MGP_CASTEiJ_T0077116.1 MGP_CASTEiJ_G0029662.1 mouse_genomes_project 6 32413084 32417412 - MGP_CASTEiJ_P0077116 3110062M04Rik protein_coding protein_coding MGP_CASTEiJ_T0077117.1 MGP_CASTEiJ_G0029662.1 mouse_genomes_project 6 32414032 32416532 - MGP_CASTEiJ_P0077117 3110062M04Rik protein_coding protein_coding MGP_CASTEiJ_T0077118.1 MGP_CASTEiJ_G0029662.1 mouse_genomes_project 6 32414730 32416383 - 3110062M04Rik protein_coding retained_intron MGP_CASTEiJ_T0102391.1 MGP_CASTEiJ_G0039116.1 mouse_genomes_project 6 56035217 56036089 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0080347.1 MGP_CASTEiJ_G0030362.1 mouse_genomes_project 6 127113648 127120060 + MGP_CASTEiJ_P0080347 Pianp protein_coding protein_coding MGP_CASTEiJ_T0080348.1 MGP_CASTEiJ_G0030362.1 mouse_genomes_project 6 127113819 127120060 + MGP_CASTEiJ_P0080348 Pianp protein_coding protein_coding MGP_CASTEiJ_T0080349.1 MGP_CASTEiJ_G0030362.1 mouse_genomes_project 6 127114032 127116695 + MGP_CASTEiJ_P0080349 Pianp protein_coding protein_coding MGP_CASTEiJ_T0080350.1 MGP_CASTEiJ_G0030362.1 mouse_genomes_project 6 127115393 127120060 + MGP_CASTEiJ_P0080350 Pianp protein_coding protein_coding MGP_CASTEiJ_T0080351.1 MGP_CASTEiJ_G0030362.1 mouse_genomes_project 6 127115573 127119104 + MGP_CASTEiJ_P0080351 Pianp protein_coding protein_coding MGP_CASTEiJ_T0080352.1 MGP_CASTEiJ_G0030362.1 mouse_genomes_project 6 127115602 127116409 + MGP_CASTEiJ_P0080352 Pianp protein_coding protein_coding MGP_CASTEiJ_T0080353.1 MGP_CASTEiJ_G0030362.1 mouse_genomes_project 6 127116625 127118016 + MGP_CASTEiJ_P0080353 Pianp protein_coding protein_coding MGP_CASTEiJ_T0017552.1 MGP_CASTEiJ_G0014960.1 mouse_genomes_project 6 109977516 109980025 + Gm17055 processed_transcript lincRNA MGP_CASTEiJ_T0017553.1 MGP_CASTEiJ_G0014960.1 mouse_genomes_project 6 109977644 109980145 + Gm17055 processed_transcript retained_intron MGP_CASTEiJ_T0100217.1 MGP_CASTEiJ_G0037130.1 mouse_genomes_project X 94382490 94382616 - Gm24831 snRNA snRNA MGP_CASTEiJ_T0097547.1 MGP_CASTEiJ_G0035036.1 mouse_genomes_project X 112722987 112725391 + MGP_CASTEiJ_P0097547 Rpl36a protein_coding protein_coding MGP_CASTEiJ_T0097548.1 MGP_CASTEiJ_G0035036.1 mouse_genomes_project X 112723022 112725397 + Rpl36a protein_coding retained_intron MGP_CASTEiJ_T0097549.1 MGP_CASTEiJ_G0035036.1 mouse_genomes_project X 112723023 112725397 + MGP_CASTEiJ_P0097549 Rpl36a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097550.1 MGP_CASTEiJ_G0035036.1 mouse_genomes_project X 112723034 112725368 + Rpl36a protein_coding retained_intron MGP_CASTEiJ_T0097551.1 MGP_CASTEiJ_G0035036.1 mouse_genomes_project X 112723423 112724350 + Rpl36a protein_coding retained_intron MGP_CASTEiJ_T0097552.1 MGP_CASTEiJ_G0035036.1 mouse_genomes_project X 112724414 112725331 + Rpl36a protein_coding retained_intron MGP_CASTEiJ_T0095601.1 MGP_CASTEiJ_G0034488.1 mouse_genomes_project X 1335342 1462849 + MGP_CASTEiJ_P0095601 Dgkk protein_coding protein_coding MGP_CASTEiJ_T0095602.1 MGP_CASTEiJ_G0034488.1 mouse_genomes_project X 1335830 1462839 + MGP_CASTEiJ_P0095602 Dgkk protein_coding protein_coding MGP_CASTEiJ_T0016023.1 MGP_CASTEiJ_G0014186.1 mouse_genomes_project X 101238725 101238978 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098193.1 MGP_CASTEiJ_G0035207.1 mouse_genomes_project X 141374799 141427749 - MGP_CASTEiJ_P0098193 Car5b protein_coding protein_coding MGP_CASTEiJ_T0098194.1 MGP_CASTEiJ_G0035207.1 mouse_genomes_project X 141410091 141427733 - Car5b protein_coding retained_intron MGP_CASTEiJ_T0097180.1 MGP_CASTEiJ_G0034922.1 mouse_genomes_project X 82509913 82536313 + MGP_CASTEiJ_P0097180 Nlgn3 protein_coding protein_coding MGP_CASTEiJ_T0097181.1 MGP_CASTEiJ_G0034922.1 mouse_genomes_project X 82509930 82529451 + MGP_CASTEiJ_P0097181 Nlgn3 protein_coding protein_coding MGP_CASTEiJ_T0097182.1 MGP_CASTEiJ_G0034922.1 mouse_genomes_project X 82509949 82536646 + MGP_CASTEiJ_P0097182 Nlgn3 protein_coding protein_coding MGP_CASTEiJ_T0097183.1 MGP_CASTEiJ_G0034922.1 mouse_genomes_project X 82511245 82512834 + Nlgn3 protein_coding processed_transcript MGP_CASTEiJ_T0097184.1 MGP_CASTEiJ_G0034922.1 mouse_genomes_project X 82525201 82528927 + Nlgn3 protein_coding processed_transcript MGP_CASTEiJ_T0016165.1 MGP_CASTEiJ_G0014328.1 mouse_genomes_project X 130791225 130792206 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095674.1 MGP_CASTEiJ_G0034505.1 mouse_genomes_project X 2285937 2295684 - MGP_CASTEiJ_P0095674 Ccdc120 protein_coding protein_coding MGP_CASTEiJ_T0095675.1 MGP_CASTEiJ_G0034505.1 mouse_genomes_project X 2292261 2294553 - MGP_CASTEiJ_P0095675 Ccdc120 protein_coding protein_coding MGP_CASTEiJ_T0095676.1 MGP_CASTEiJ_G0034505.1 mouse_genomes_project X 2292518 2295651 - Ccdc120 protein_coding processed_transcript MGP_CASTEiJ_T0095677.1 MGP_CASTEiJ_G0034505.1 mouse_genomes_project X 2292532 2294574 - Ccdc120 protein_coding processed_transcript MGP_CASTEiJ_T0095678.1 MGP_CASTEiJ_G0034505.1 mouse_genomes_project X 2292543 2295667 - Ccdc120 protein_coding processed_transcript MGP_CASTEiJ_T0095679.1 MGP_CASTEiJ_G0034505.1 mouse_genomes_project X 2292670 2294550 - Ccdc120 protein_coding processed_transcript MGP_CASTEiJ_T0095680.1 MGP_CASTEiJ_G0034505.1 mouse_genomes_project X 2292760 2306828 - Ccdc120 protein_coding processed_transcript MGP_CASTEiJ_T0095681.1 MGP_CASTEiJ_G0034505.1 mouse_genomes_project X 2292813 2306820 - Ccdc120 protein_coding processed_transcript MGP_CASTEiJ_T0096242.1 MGP_CASTEiJ_G0034668.1 mouse_genomes_project X 32737485 32743193 - MGP_CASTEiJ_P0096242 Igsf1 protein_coding protein_coding MGP_CASTEiJ_T0096243.1 MGP_CASTEiJ_G0034668.1 mouse_genomes_project X 32737485 32751889 - MGP_CASTEiJ_P0096243 Igsf1 protein_coding protein_coding MGP_CASTEiJ_T0096244.1 MGP_CASTEiJ_G0034668.1 mouse_genomes_project X 32737494 32746449 - MGP_CASTEiJ_P0096244 Igsf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096245.1 MGP_CASTEiJ_G0034668.1 mouse_genomes_project X 32740933 32749503 - MGP_CASTEiJ_P0096245 Igsf1 protein_coding protein_coding MGP_CASTEiJ_T0096246.1 MGP_CASTEiJ_G0034668.1 mouse_genomes_project X 32747100 32752023 - MGP_CASTEiJ_P0096246 Igsf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096247.1 MGP_CASTEiJ_G0034668.1 mouse_genomes_project X 32749083 32751875 - Igsf1 protein_coding processed_transcript MGP_CASTEiJ_T0097059.1 MGP_CASTEiJ_G0034891.1 mouse_genomes_project X 78023845 78026954 + Gpr165 protein_coding retained_intron MGP_CASTEiJ_T0097060.1 MGP_CASTEiJ_G0034891.1 mouse_genomes_project X 78023896 78029822 + MGP_CASTEiJ_P0097060 Gpr165 protein_coding protein_coding MGP_CASTEiJ_T0097061.1 MGP_CASTEiJ_G0034891.1 mouse_genomes_project X 78023917 78026215 + Gpr165 protein_coding retained_intron MGP_CASTEiJ_T0097062.1 MGP_CASTEiJ_G0034891.1 mouse_genomes_project X 78024626 78029716 + Gpr165 protein_coding retained_intron MGP_CASTEiJ_T0102613.1 MGP_CASTEiJ_G0039337.1 mouse_genomes_project X 7877638 7877776 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0016007.1 MGP_CASTEiJ_G0014170.1 mouse_genomes_project X 97846294 97846684 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016117.1 MGP_CASTEiJ_G0014280.1 mouse_genomes_project X 120524891 120525832 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016005.1 MGP_CASTEiJ_G0014168.1 mouse_genomes_project X 97152913 97153248 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009155.1 MGP_CASTEiJ_G0007366.1 mouse_genomes_project X 57571677 57585806 - Gm14715 lincRNA lincRNA MGP_CASTEiJ_T0010885.1 MGP_CASTEiJ_G0009073.1 mouse_genomes_project X 109027721 109027831 - Gm26209 miRNA miRNA MGP_CASTEiJ_T0005440.1 MGP_CASTEiJ_G0004594.1 mouse_genomes_project X 42246845 42496660 + antisense antisense MGP_CASTEiJ_T0015878.1 MGP_CASTEiJ_G0014041.1 mouse_genomes_project X 75986860 75987467 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016079.1 MGP_CASTEiJ_G0014242.1 mouse_genomes_project X 114938231 114938638 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016193.1 MGP_CASTEiJ_G0014356.1 mouse_genomes_project X 135559440 135564290 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102622.1 MGP_CASTEiJ_G0039346.1 mouse_genomes_project X 37494619 37509065 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010853.1 MGP_CASTEiJ_G0009041.1 mouse_genomes_project X 49588946 49589012 - Mir201 miRNA miRNA MGP_CASTEiJ_T0015891.1 MGP_CASTEiJ_G0014054.1 mouse_genomes_project X 77598885 77600304 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016223.1 MGP_CASTEiJ_G0014386.1 mouse_genomes_project X 143343120 143343509 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097480.1 MGP_CASTEiJ_G0035018.1 mouse_genomes_project X 107874857 108321351 + Diaph2 protein_coding retained_intron MGP_CASTEiJ_T0097481.1 MGP_CASTEiJ_G0035018.1 mouse_genomes_project X 107874857 108605591 + MGP_CASTEiJ_P0097481 Diaph2 protein_coding protein_coding MGP_CASTEiJ_T0097482.1 MGP_CASTEiJ_G0035018.1 mouse_genomes_project X 107874911 108461502 + Diaph2 protein_coding retained_intron MGP_CASTEiJ_T0097483.1 MGP_CASTEiJ_G0035018.1 mouse_genomes_project X 107874920 108600981 + MGP_CASTEiJ_P0097483 Diaph2 protein_coding protein_coding MGP_CASTEiJ_T0097484.1 MGP_CASTEiJ_G0035018.1 mouse_genomes_project X 107874939 108461181 + Diaph2 protein_coding retained_intron MGP_CASTEiJ_T0097485.1 MGP_CASTEiJ_G0035018.1 mouse_genomes_project X 107875026 108095574 + MGP_CASTEiJ_P0097485 Diaph2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097486.1 MGP_CASTEiJ_G0035018.1 mouse_genomes_project X 107875091 108605594 + MGP_CASTEiJ_P0097486 Diaph2 protein_coding protein_coding MGP_CASTEiJ_T0097487.1 MGP_CASTEiJ_G0035018.1 mouse_genomes_project X 108101374 108170464 + Diaph2 protein_coding processed_transcript MGP_CASTEiJ_T0017919.1 MGP_CASTEiJ_G0015108.1 mouse_genomes_project X 113598486 113782612 + processed_transcript processed_transcript MGP_CASTEiJ_T0100213.1 MGP_CASTEiJ_G0037126.1 mouse_genomes_project X 88080669 88080776 - Gm24491 snRNA snRNA MGP_CASTEiJ_T0097778.1 MGP_CASTEiJ_G0035116.1 mouse_genomes_project X 120625818 120627361 - MGP_CASTEiJ_P0097778 Kcne1l protein_coding protein_coding MGP_CASTEiJ_T0005447.1 MGP_CASTEiJ_G0004600.1 mouse_genomes_project X 57222869 57223563 + Gm15384 antisense antisense MGP_CASTEiJ_T0096258.1 MGP_CASTEiJ_G0034675.1 mouse_genomes_project X 34008258 34018126 - Mbnl3 protein_coding retained_intron MGP_CASTEiJ_T0096259.1 MGP_CASTEiJ_G0034675.1 mouse_genomes_project X 34008295 34058387 - MGP_CASTEiJ_P0096259 Mbnl3 protein_coding protein_coding MGP_CASTEiJ_T0096260.1 MGP_CASTEiJ_G0034675.1 mouse_genomes_project X 34008691 34031610 - Mbnl3 protein_coding processed_transcript MGP_CASTEiJ_T0096261.1 MGP_CASTEiJ_G0034675.1 mouse_genomes_project X 34008813 34058907 - MGP_CASTEiJ_P0096261 Mbnl3 protein_coding protein_coding MGP_CASTEiJ_T0096262.1 MGP_CASTEiJ_G0034675.1 mouse_genomes_project X 34058129 34102523 - Mbnl3 protein_coding processed_transcript MGP_CASTEiJ_T0015979.1 MGP_CASTEiJ_G0014142.1 mouse_genomes_project X 93107323 93108056 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100192.1 MGP_CASTEiJ_G0037105.1 mouse_genomes_project X 39726566 39726673 + Gm25023 snRNA snRNA MGP_CASTEiJ_T0095736.1 MGP_CASTEiJ_G0034515.1 mouse_genomes_project X 2475018 2475404 + MGP_CASTEiJ_P0095736 protein_coding protein_coding MGP_CASTEiJ_T0016038.1 MGP_CASTEiJ_G0014201.1 mouse_genomes_project X 105105605 105107642 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010904.1 MGP_CASTEiJ_G0009092.1 mouse_genomes_project X 129286803 129286886 + Mirlet7f-2 miRNA miRNA MGP_CASTEiJ_T0015898.1 MGP_CASTEiJ_G0014061.1 mouse_genomes_project X 79056761 79057487 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101424.1 MGP_CASTEiJ_G0038337.1 mouse_genomes_project X 2091287 2091420 - Gm23082 snoRNA snoRNA MGP_CASTEiJ_T0095708.1 MGP_CASTEiJ_G0034509.1 mouse_genomes_project X 2400163 2400808 + Otud5 protein_coding processed_transcript MGP_CASTEiJ_T0095709.1 MGP_CASTEiJ_G0034509.1 mouse_genomes_project X 2400630 2437736 + MGP_CASTEiJ_P0095709 Otud5 protein_coding protein_coding MGP_CASTEiJ_T0095710.1 MGP_CASTEiJ_G0034509.1 mouse_genomes_project X 2400655 2435968 + MGP_CASTEiJ_P0095710 Otud5 protein_coding protein_coding MGP_CASTEiJ_T0095711.1 MGP_CASTEiJ_G0034509.1 mouse_genomes_project X 2400855 2436393 + MGP_CASTEiJ_P0095711 Otud5 protein_coding protein_coding MGP_CASTEiJ_T0095712.1 MGP_CASTEiJ_G0034509.1 mouse_genomes_project X 2400881 2436398 + MGP_CASTEiJ_P0095712 Otud5 protein_coding protein_coding MGP_CASTEiJ_T0095713.1 MGP_CASTEiJ_G0034509.1 mouse_genomes_project X 2400915 2437730 + MGP_CASTEiJ_P0095713 Otud5 protein_coding protein_coding MGP_CASTEiJ_T0095714.1 MGP_CASTEiJ_G0034509.1 mouse_genomes_project X 2401404 2436392 + Otud5 protein_coding retained_intron MGP_CASTEiJ_T0095715.1 MGP_CASTEiJ_G0034509.1 mouse_genomes_project X 2401405 2429070 + Otud5 protein_coding retained_intron MGP_CASTEiJ_T0095716.1 MGP_CASTEiJ_G0034509.1 mouse_genomes_project X 2416468 2428671 + Otud5 protein_coding retained_intron MGP_CASTEiJ_T0016175.1 MGP_CASTEiJ_G0014338.1 mouse_genomes_project X 132559157 132559787 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098005.1 MGP_CASTEiJ_G0035162.1 mouse_genomes_project X 131063250 131074349 - MGP_CASTEiJ_P0098005 Kctd12b protein_coding protein_coding MGP_CASTEiJ_T0098006.1 MGP_CASTEiJ_G0035162.1 mouse_genomes_project X 131063250 131074445 - MGP_CASTEiJ_P0098006 Kctd12b protein_coding protein_coding MGP_CASTEiJ_T0097033.1 MGP_CASTEiJ_G0034885.1 mouse_genomes_project X 77115439 77116176 - MGP_CASTEiJ_P0097033 Gm5941 protein_coding protein_coding MGP_CASTEiJ_T0098252.1 MGP_CASTEiJ_G0035222.1 mouse_genomes_project X 143717220 143765681 - MGP_CASTEiJ_P0098252 Ofd1 protein_coding protein_coding MGP_CASTEiJ_T0096313.1 MGP_CASTEiJ_G0034703.1 mouse_genomes_project X 38308542 38321095 - MGP_CASTEiJ_P0096313 Mmgt1 protein_coding protein_coding MGP_CASTEiJ_T0097099.1 MGP_CASTEiJ_G0034902.1 mouse_genomes_project X 81180583 81499243 + Eda protein_coding retained_intron MGP_CASTEiJ_T0097100.1 MGP_CASTEiJ_G0034902.1 mouse_genomes_project X 81180583 81593412 + MGP_CASTEiJ_P0097100 Eda protein_coding protein_coding MGP_CASTEiJ_T0097101.1 MGP_CASTEiJ_G0034902.1 mouse_genomes_project X 81180583 81593409 + MGP_CASTEiJ_P0097101 Eda protein_coding protein_coding MGP_CASTEiJ_T0097102.1 MGP_CASTEiJ_G0034902.1 mouse_genomes_project X 81180583 81593410 + MGP_CASTEiJ_P0097102 Eda protein_coding protein_coding MGP_CASTEiJ_T0097103.1 MGP_CASTEiJ_G0034902.1 mouse_genomes_project X 81180583 81593410 + MGP_CASTEiJ_P0097103 Eda protein_coding protein_coding MGP_CASTEiJ_T0097104.1 MGP_CASTEiJ_G0034902.1 mouse_genomes_project X 81180583 81593410 + MGP_CASTEiJ_P0097104 Eda protein_coding protein_coding MGP_CASTEiJ_T0097105.1 MGP_CASTEiJ_G0034902.1 mouse_genomes_project X 81180583 81593412 + MGP_CASTEiJ_P0097105 Eda protein_coding protein_coding MGP_CASTEiJ_T0097106.1 MGP_CASTEiJ_G0034902.1 mouse_genomes_project X 81180583 81593409 + MGP_CASTEiJ_P0097106 Eda protein_coding protein_coding MGP_CASTEiJ_T0097107.1 MGP_CASTEiJ_G0034902.1 mouse_genomes_project X 81180758 81589818 + MGP_CASTEiJ_P0097107 Eda protein_coding protein_coding MGP_CASTEiJ_T0097108.1 MGP_CASTEiJ_G0034902.1 mouse_genomes_project X 81180758 81588476 + MGP_CASTEiJ_P0097108 Eda protein_coding protein_coding MGP_CASTEiJ_T0097109.1 MGP_CASTEiJ_G0034902.1 mouse_genomes_project X 81580011 81587102 + Eda protein_coding processed_transcript MGP_CASTEiJ_T0100205.1 MGP_CASTEiJ_G0037118.1 mouse_genomes_project X 79981320 79981427 + Gm26000 snRNA snRNA MGP_CASTEiJ_T0102644.1 MGP_CASTEiJ_G0039368.1 mouse_genomes_project X 83968783 83969525 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102617.1 MGP_CASTEiJ_G0039341.1 mouse_genomes_project X 21224547 21229348 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101477.1 MGP_CASTEiJ_G0038390.1 mouse_genomes_project X 141707025 141707155 + Gm22023 snoRNA snoRNA MGP_CASTEiJ_T0098075.1 MGP_CASTEiJ_G0035183.1 mouse_genomes_project X 136743757 136836209 + MGP_CASTEiJ_P0098075 Map7d2 protein_coding protein_coding MGP_CASTEiJ_T0098076.1 MGP_CASTEiJ_G0035183.1 mouse_genomes_project X 136781280 136828217 + MGP_CASTEiJ_P0098076 Map7d2 protein_coding protein_coding MGP_CASTEiJ_T0098077.1 MGP_CASTEiJ_G0035183.1 mouse_genomes_project X 136794392 136824274 + MGP_CASTEiJ_P0098077 Map7d2 protein_coding protein_coding MGP_CASTEiJ_T0098078.1 MGP_CASTEiJ_G0035183.1 mouse_genomes_project X 136794404 136806651 + MGP_CASTEiJ_P0098078 Map7d2 protein_coding protein_coding MGP_CASTEiJ_T0096480.1 MGP_CASTEiJ_G0034756.1 mouse_genomes_project X 53778395 53779752 + MGP_CASTEiJ_P0096480 Magea4 protein_coding protein_coding MGP_CASTEiJ_T0096481.1 MGP_CASTEiJ_G0034757.1 mouse_genomes_project X 53814595 53833370 - MGP_CASTEiJ_P0096481 Gabre protein_coding protein_coding MGP_CASTEiJ_T0096482.1 MGP_CASTEiJ_G0034757.1 mouse_genomes_project X 53820019 53828406 - Gabre protein_coding processed_transcript MGP_CASTEiJ_T0096483.1 MGP_CASTEiJ_G0034757.1 mouse_genomes_project X 53827610 53833370 - Gabre protein_coding retained_intron MGP_CASTEiJ_T0097028.1 MGP_CASTEiJ_G0034882.1 mouse_genomes_project X 76843439 76851360 - MGP_CASTEiJ_P0097028 Asb12 protein_coding protein_coding MGP_CASTEiJ_T0097626.1 MGP_CASTEiJ_G0035063.1 mouse_genomes_project X 114490113 114493039 - MGP_CASTEiJ_P0097626 Tceal5 protein_coding protein_coding MGP_CASTEiJ_T0101700.1 MGP_CASTEiJ_G0038522.1 mouse_genomes_project X 127615926 127616896 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0015820.1 MGP_CASTEiJ_G0013983.1 mouse_genomes_project X 65414152 65414583 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097460.1 MGP_CASTEiJ_G0035007.1 mouse_genomes_project X 97914261 97914819 - MGP_CASTEiJ_P0097460 protein_coding protein_coding MGP_CASTEiJ_T0015627.1 MGP_CASTEiJ_G0013790.1 mouse_genomes_project X 17784268 17784718 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097461.1 MGP_CASTEiJ_G0035008.1 mouse_genomes_project X 97914444 97914792 - MGP_CASTEiJ_P0097461 H2afb3 protein_coding protein_coding MGP_CASTEiJ_T0097032.1 MGP_CASTEiJ_G0034884.1 mouse_genomes_project X 77095183 77277491 + Zc3h12b protein_coding processed_transcript MGP_CASTEiJ_T0097034.1 MGP_CASTEiJ_G0034884.1 mouse_genomes_project X 77242280 77285745 + MGP_CASTEiJ_P0097034 Zc3h12b protein_coding protein_coding MGP_CASTEiJ_T0097035.1 MGP_CASTEiJ_G0034884.1 mouse_genomes_project X 77251050 77285377 + MGP_CASTEiJ_P0097035 Zc3h12b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097927.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129167632 129171426 + Huwe1 protein_coding processed_transcript MGP_CASTEiJ_T0097928.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129170008 129309811 + MGP_CASTEiJ_P0097928 Huwe1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097929.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129170014 129173674 + Huwe1 protein_coding processed_transcript MGP_CASTEiJ_T0097930.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129170445 129176024 + Huwe1 protein_coding processed_transcript MGP_CASTEiJ_T0097931.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129172405 129246884 + MGP_CASTEiJ_P0097931 Huwe1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097932.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129172423 129176024 + Huwe1 protein_coding processed_transcript MGP_CASTEiJ_T0097933.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129172489 129223244 + Huwe1 protein_coding retained_intron MGP_CASTEiJ_T0097934.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129172489 129309809 + MGP_CASTEiJ_P0097934 Huwe1 protein_coding protein_coding MGP_CASTEiJ_T0097935.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129172509 129231606 + Huwe1 protein_coding retained_intron MGP_CASTEiJ_T0097936.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129172509 129247400 + Huwe1 protein_coding retained_intron MGP_CASTEiJ_T0097937.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129172820 129205334 + MGP_CASTEiJ_P0097937 Huwe1 protein_coding protein_coding MGP_CASTEiJ_T0097938.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129172824 129246056 + Huwe1 protein_coding retained_intron MGP_CASTEiJ_T0097939.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129172824 129217632 + Huwe1 protein_coding processed_transcript MGP_CASTEiJ_T0097940.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129172824 129210159 + MGP_CASTEiJ_P0097940 Huwe1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097941.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129205305 129309809 + MGP_CASTEiJ_P0097941 Huwe1 protein_coding protein_coding MGP_CASTEiJ_T0097942.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129231226 129265578 + MGP_CASTEiJ_P0097942 Huwe1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097943.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129238456 129247754 + MGP_CASTEiJ_P0097943 Huwe1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097944.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129256469 129257185 + Huwe1 protein_coding processed_transcript MGP_CASTEiJ_T0097945.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129279472 129284395 + Huwe1 protein_coding retained_intron MGP_CASTEiJ_T0097946.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129283322 129284867 + Huwe1 protein_coding retained_intron MGP_CASTEiJ_T0097947.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129283322 129284670 + Huwe1 protein_coding retained_intron MGP_CASTEiJ_T0097948.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129295743 129297070 + Huwe1 protein_coding retained_intron MGP_CASTEiJ_T0097949.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129295804 129298191 + Huwe1 protein_coding retained_intron MGP_CASTEiJ_T0097950.1 MGP_CASTEiJ_G0035145.1 mouse_genomes_project X 129298715 129302199 + Huwe1 protein_coding retained_intron MGP_CASTEiJ_T0015821.1 MGP_CASTEiJ_G0013984.1 mouse_genomes_project X 66218741 66219053 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015964.1 MGP_CASTEiJ_G0014127.1 mouse_genomes_project X 88672360 88673308 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096693.1 MGP_CASTEiJ_G0034798.1 mouse_genomes_project X 55917975 55920653 + MGP_CASTEiJ_P0096693 protein_coding protein_coding MGP_CASTEiJ_T0096694.1 MGP_CASTEiJ_G0034798.1 mouse_genomes_project X 55918021 55920631 + protein_coding processed_transcript MGP_CASTEiJ_T0096695.1 MGP_CASTEiJ_G0034798.1 mouse_genomes_project X 55918023 55920651 + MGP_CASTEiJ_P0096695 protein_coding protein_coding MGP_CASTEiJ_T0096696.1 MGP_CASTEiJ_G0034798.1 mouse_genomes_project X 55918119 55920091 + protein_coding retained_intron MGP_CASTEiJ_T0096697.1 MGP_CASTEiJ_G0034798.1 mouse_genomes_project X 55918577 55922942 + protein_coding retained_intron MGP_CASTEiJ_T0096698.1 MGP_CASTEiJ_G0034798.1 mouse_genomes_project X 55920087 55922711 + protein_coding retained_intron MGP_CASTEiJ_T0015943.1 MGP_CASTEiJ_G0014106.1 mouse_genomes_project X 85180123 85180434 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101681.1 MGP_CASTEiJ_G0038509.1 mouse_genomes_project X 9751628 9752510 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101682.1 MGP_CASTEiJ_G0038509.1 mouse_genomes_project X 9751875 9752424 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0011437.1 MGP_CASTEiJ_G0009625.1 mouse_genomes_project X 84997679 84997772 + Gm27987 misc_RNA misc_RNA MGP_CASTEiJ_T0010827.1 MGP_CASTEiJ_G0009015.1 mouse_genomes_project X 35986701 35986770 - Mir450-2 miRNA miRNA MGP_CASTEiJ_T0096280.1 MGP_CASTEiJ_G0034683.1 mouse_genomes_project X 35921224 35958169 + MGP_CASTEiJ_P0096280 Hprt protein_coding protein_coding MGP_CASTEiJ_T0101453.1 MGP_CASTEiJ_G0038366.1 mouse_genomes_project X 101898062 101898190 + Gm22590 snoRNA snoRNA MGP_CASTEiJ_T0097280.1 MGP_CASTEiJ_G0034946.1 mouse_genomes_project X 84730851 84774109 + MGP_CASTEiJ_P0097280 Chic1 protein_coding protein_coding MGP_CASTEiJ_T0098040.1 MGP_CASTEiJ_G0035175.1 mouse_genomes_project X 134877603 134913148 - Mbtps2 protein_coding processed_transcript MGP_CASTEiJ_T0098041.1 MGP_CASTEiJ_G0035175.1 mouse_genomes_project X 134891440 134945518 - MGP_CASTEiJ_P0098041 Mbtps2 protein_coding protein_coding MGP_CASTEiJ_T0098042.1 MGP_CASTEiJ_G0035175.1 mouse_genomes_project X 134910089 134945453 - MGP_CASTEiJ_P0098042 Mbtps2 protein_coding protein_coding MGP_CASTEiJ_T0098043.1 MGP_CASTEiJ_G0035175.1 mouse_genomes_project X 134910090 134945453 - MGP_CASTEiJ_P0098043 Mbtps2 protein_coding protein_coding MGP_CASTEiJ_T0098045.1 MGP_CASTEiJ_G0035175.1 mouse_genomes_project X 134913208 134924969 - Mbtps2 protein_coding processed_transcript MGP_CASTEiJ_T0098046.1 MGP_CASTEiJ_G0035175.1 mouse_genomes_project X 134915576 134945454 - Mbtps2 protein_coding retained_intron MGP_CASTEiJ_T0098047.1 MGP_CASTEiJ_G0035175.1 mouse_genomes_project X 134917282 134945482 - MGP_CASTEiJ_P0098047 Mbtps2 protein_coding protein_coding MGP_CASTEiJ_T0098048.1 MGP_CASTEiJ_G0035175.1 mouse_genomes_project X 134937075 134945446 - Mbtps2 protein_coding retained_intron MGP_CASTEiJ_T0015616.1 MGP_CASTEiJ_G0013779.1 mouse_genomes_project X 14931718 14933059 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009180.1 MGP_CASTEiJ_G0007380.1 mouse_genomes_project X 86736813 86781993 - 5330434G04Rik lincRNA lincRNA MGP_CASTEiJ_T0009181.1 MGP_CASTEiJ_G0007380.1 mouse_genomes_project X 86738879 86781993 - 5330434G04Rik lincRNA lincRNA MGP_CASTEiJ_T0009182.1 MGP_CASTEiJ_G0007380.1 mouse_genomes_project X 86764603 86781971 - 5330434G04Rik lincRNA lincRNA MGP_CASTEiJ_T0009183.1 MGP_CASTEiJ_G0007380.1 mouse_genomes_project X 86767315 86778134 - 5330434G04Rik lincRNA lincRNA MGP_CASTEiJ_T0097295.1 MGP_CASTEiJ_G0034954.1 mouse_genomes_project X 85903391 85930834 + MGP_CASTEiJ_P0097295 Uprt protein_coding protein_coding MGP_CASTEiJ_T0015680.1 MGP_CASTEiJ_G0013843.1 mouse_genomes_project X 31349174 31349522 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010824.1 MGP_CASTEiJ_G0009012.1 mouse_genomes_project X 35658874 35658939 - Mir106a miRNA miRNA MGP_CASTEiJ_T0097757.1 MGP_CASTEiJ_G0035106.1 mouse_genomes_project X 119308065 119344303 + MGP_CASTEiJ_P0097757 Vsig1 protein_coding protein_coding MGP_CASTEiJ_T0097758.1 MGP_CASTEiJ_G0035106.1 mouse_genomes_project X 119328070 119343120 + Vsig1 protein_coding processed_transcript MGP_CASTEiJ_T0015880.1 MGP_CASTEiJ_G0014043.1 mouse_genomes_project X 76046543 76047021 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015554.1 MGP_CASTEiJ_G0013717.1 mouse_genomes_project X 399506 401318 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095752.1 MGP_CASTEiJ_G0034520.1 mouse_genomes_project X 2579423 2596684 - MGP_CASTEiJ_P0095752 Glod5 protein_coding protein_coding MGP_CASTEiJ_T0097283.1 MGP_CASTEiJ_G0034949.1 mouse_genomes_project X 85023779 85024860 + MGP_CASTEiJ_P0097283 Zcchc13 protein_coding protein_coding MGP_CASTEiJ_T0096929.1 MGP_CASTEiJ_G0034852.1 mouse_genomes_project X 66600895 66622023 + MGP_CASTEiJ_P0096929 Fthl17a protein_coding protein_coding MGP_CASTEiJ_T0016142.1 MGP_CASTEiJ_G0014305.1 mouse_genomes_project X 124083107 124083925 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015896.1 MGP_CASTEiJ_G0014059.1 mouse_genomes_project X 78335716 78336521 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095971.1 MGP_CASTEiJ_G0034579.1 mouse_genomes_project X 15342935 15349049 - MGP_CASTEiJ_P0095971 Cfp protein_coding protein_coding MGP_CASTEiJ_T0095972.1 MGP_CASTEiJ_G0034579.1 mouse_genomes_project X 15343133 15345097 - Cfp protein_coding processed_transcript MGP_CASTEiJ_T0016112.1 MGP_CASTEiJ_G0014275.1 mouse_genomes_project X 120197647 120197914 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097430.1 MGP_CASTEiJ_G0034995.1 mouse_genomes_project X 93412983 93451511 + Apool protein_coding retained_intron MGP_CASTEiJ_T0097431.1 MGP_CASTEiJ_G0034995.1 mouse_genomes_project X 93412983 93481908 + MGP_CASTEiJ_P0097431 Apool protein_coding unknown_likely_coding MGP_CASTEiJ_T0015690.1 MGP_CASTEiJ_G0013853.1 mouse_genomes_project X 34114881 34115981 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005456.1 MGP_CASTEiJ_G0004608.1 mouse_genomes_project X 83034463 83041621 + antisense antisense MGP_CASTEiJ_T0015638.1 MGP_CASTEiJ_G0013801.1 mouse_genomes_project X 21739370 21739763 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015866.1 MGP_CASTEiJ_G0014029.1 mouse_genomes_project X 74051985 74053552 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097365.1 MGP_CASTEiJ_G0034973.1 mouse_genomes_project X 88334652 88349100 + MGP_CASTEiJ_P0097365 Lpar4 protein_coding protein_coding MGP_CASTEiJ_T0015639.1 MGP_CASTEiJ_G0013802.1 mouse_genomes_project X 22090279 22090573 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101446.1 MGP_CASTEiJ_G0038359.1 mouse_genomes_project X 75901686 75901796 + Gm24595 snoRNA snoRNA MGP_CASTEiJ_T0097512.1 MGP_CASTEiJ_G0035025.1 mouse_genomes_project X 112192500 112220256 - MGP_CASTEiJ_P0097512 Nox1 protein_coding protein_coding MGP_CASTEiJ_T0097513.1 MGP_CASTEiJ_G0035025.1 mouse_genomes_project X 112193131 112220167 - MGP_CASTEiJ_P0097513 Nox1 protein_coding protein_coding MGP_CASTEiJ_T0097514.1 MGP_CASTEiJ_G0035025.1 mouse_genomes_project X 112193223 112220110 - MGP_CASTEiJ_P0097514 Nox1 protein_coding protein_coding MGP_CASTEiJ_T0097515.1 MGP_CASTEiJ_G0035025.1 mouse_genomes_project X 112216158 112336050 - MGP_CASTEiJ_P0097515 Nox1 protein_coding protein_coding MGP_CASTEiJ_T0097516.1 MGP_CASTEiJ_G0035025.1 mouse_genomes_project X 112216158 112247282 - MGP_CASTEiJ_P0097516 Nox1 protein_coding protein_coding MGP_CASTEiJ_T0096345.1 MGP_CASTEiJ_G0034711.1 mouse_genomes_project X 38958032 38970520 + MGP_CASTEiJ_P0096345 Cd40lg protein_coding protein_coding MGP_CASTEiJ_T0097620.1 MGP_CASTEiJ_G0035061.1 mouse_genomes_project X 114345370 114361441 - MGP_CASTEiJ_P0097620 Nxf3 protein_coding protein_coding MGP_CASTEiJ_T0097621.1 MGP_CASTEiJ_G0035061.1 mouse_genomes_project X 114352880 114361428 - MGP_CASTEiJ_P0097621 Nxf3 protein_coding protein_coding MGP_CASTEiJ_T0015596.1 MGP_CASTEiJ_G0013759.1 mouse_genomes_project X 10147019 10147561 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015955.1 MGP_CASTEiJ_G0014118.1 mouse_genomes_project X 88043813 88044686 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010836.1 MGP_CASTEiJ_G0009024.1 mouse_genomes_project X 42868261 42868460 + miRNA miRNA MGP_CASTEiJ_T0102646.1 MGP_CASTEiJ_G0039370.1 mouse_genomes_project X 83997351 83999228 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0097775.1 MGP_CASTEiJ_G0035115.1 mouse_genomes_project X 120546051 120562179 + MGP_CASTEiJ_P0097775 Nxt2 protein_coding protein_coding MGP_CASTEiJ_T0097776.1 MGP_CASTEiJ_G0035115.1 mouse_genomes_project X 120547502 120550054 + Nxt2 protein_coding retained_intron MGP_CASTEiJ_T0097777.1 MGP_CASTEiJ_G0035115.1 mouse_genomes_project X 120547642 120562185 + MGP_CASTEiJ_P0097777 Nxt2 protein_coding protein_coding MGP_CASTEiJ_T0097569.1 MGP_CASTEiJ_G0035041.1 mouse_genomes_project X 112903827 112908894 + MGP_CASTEiJ_P0097569 Armcx3 protein_coding protein_coding MGP_CASTEiJ_T0097570.1 MGP_CASTEiJ_G0035041.1 mouse_genomes_project X 112903839 112907585 + MGP_CASTEiJ_P0097570 Armcx3 protein_coding protein_coding MGP_CASTEiJ_T0097571.1 MGP_CASTEiJ_G0035041.1 mouse_genomes_project X 112903879 112908924 + MGP_CASTEiJ_P0097571 Armcx3 protein_coding protein_coding MGP_CASTEiJ_T0095889.1 MGP_CASTEiJ_G0034554.1 mouse_genomes_project X 8374087 8380741 + MGP_CASTEiJ_P0095889 Gpr82 protein_coding protein_coding MGP_CASTEiJ_T0098698.1 MGP_CASTEiJ_G0035629.1 mouse_genomes_project X 114564075 114564194 + n-R5s12 rRNA rRNA MGP_CASTEiJ_T0097742.1 MGP_CASTEiJ_G0035102.1 mouse_genomes_project X 118832306 118842229 + Prps1 protein_coding processed_transcript MGP_CASTEiJ_T0097743.1 MGP_CASTEiJ_G0035102.1 mouse_genomes_project X 118832306 118852575 + MGP_CASTEiJ_P0097743 Prps1 protein_coding protein_coding MGP_CASTEiJ_T0011454.1 MGP_CASTEiJ_G0009642.1 mouse_genomes_project X 140448097 140448353 - Gm23501 misc_RNA misc_RNA MGP_CASTEiJ_T0098726.1 MGP_CASTEiJ_G0035657.1 mouse_genomes_project X 63485309 63485528 + Gm26174 ribozyme ribozyme MGP_CASTEiJ_T0096241.1 MGP_CASTEiJ_G0034667.1 mouse_genomes_project X 32675289 32676249 - MGP_CASTEiJ_P0096241 Olfr1321 protein_coding protein_coding MGP_CASTEiJ_T0096510.1 MGP_CASTEiJ_G0034772.1 mouse_genomes_project X 55015433 55038836 - MGP_CASTEiJ_P0096510 Haus7 protein_coding protein_coding MGP_CASTEiJ_T0096511.1 MGP_CASTEiJ_G0034772.1 mouse_genomes_project X 55015433 55038836 - MGP_CASTEiJ_P0096511 Haus7 protein_coding protein_coding MGP_CASTEiJ_T0096512.1 MGP_CASTEiJ_G0034772.1 mouse_genomes_project X 55015435 55026010 - Haus7 protein_coding processed_transcript MGP_CASTEiJ_T0010856.1 MGP_CASTEiJ_G0009044.1 mouse_genomes_project X 53093544 53093636 - Gm23945 miRNA miRNA MGP_CASTEiJ_T0095738.1 MGP_CASTEiJ_G0034517.1 mouse_genomes_project X 2489799 2494103 - MGP_CASTEiJ_P0095738 Eras protein_coding protein_coding MGP_CASTEiJ_T0097476.1 MGP_CASTEiJ_G0035014.1 mouse_genomes_project X 105245528 105271274 + MGP_CASTEiJ_P0097476 Gm382 protein_coding protein_coding MGP_CASTEiJ_T0016012.1 MGP_CASTEiJ_G0014175.1 mouse_genomes_project X 98789990 98792087 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102626.1 MGP_CASTEiJ_G0039350.1 mouse_genomes_project X 47680633 47680898 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0097092.1 MGP_CASTEiJ_G0034900.1 mouse_genomes_project X 80668249 80673742 - MGP_CASTEiJ_P0097092 Pja1 protein_coding protein_coding MGP_CASTEiJ_T0097093.1 MGP_CASTEiJ_G0034900.1 mouse_genomes_project X 80668253 80673176 - MGP_CASTEiJ_P0097093 Pja1 protein_coding protein_coding MGP_CASTEiJ_T0097094.1 MGP_CASTEiJ_G0034900.1 mouse_genomes_project X 80668283 80673224 - MGP_CASTEiJ_P0097094 Pja1 protein_coding protein_coding MGP_CASTEiJ_T0097095.1 MGP_CASTEiJ_G0034900.1 mouse_genomes_project X 80668627 80673181 - MGP_CASTEiJ_P0097095 Pja1 protein_coding protein_coding MGP_CASTEiJ_T0097096.1 MGP_CASTEiJ_G0034900.1 mouse_genomes_project X 80668659 80673161 - MGP_CASTEiJ_P0097096 Pja1 protein_coding protein_coding MGP_CASTEiJ_T0010903.1 MGP_CASTEiJ_G0009091.1 mouse_genomes_project X 129230621 129230697 + Mir3113 miRNA miRNA MGP_CASTEiJ_T0096193.1 MGP_CASTEiJ_G0034655.1 mouse_genomes_project X 31369349 31390531 + Bcorl1 protein_coding processed_transcript MGP_CASTEiJ_T0096194.1 MGP_CASTEiJ_G0034655.1 mouse_genomes_project X 31369439 31436331 + MGP_CASTEiJ_P0096194 Bcorl1 protein_coding protein_coding MGP_CASTEiJ_T0096195.1 MGP_CASTEiJ_G0034655.1 mouse_genomes_project X 31389644 31407165 + MGP_CASTEiJ_P0096195 Bcorl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096196.1 MGP_CASTEiJ_G0034655.1 mouse_genomes_project X 31397368 31412000 + MGP_CASTEiJ_P0096196 Bcorl1 protein_coding protein_coding MGP_CASTEiJ_T0015674.1 MGP_CASTEiJ_G0013837.1 mouse_genomes_project X 29503656 29504064 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097383.1 MGP_CASTEiJ_G0034978.1 mouse_genomes_project X 89058935 89084903 + MGP_CASTEiJ_P0097383 Tbx22 protein_coding protein_coding MGP_CASTEiJ_T0097384.1 MGP_CASTEiJ_G0034978.1 mouse_genomes_project X 89058935 89075775 + MGP_CASTEiJ_P0097384 Tbx22 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097385.1 MGP_CASTEiJ_G0034978.1 mouse_genomes_project X 89071115 89081722 + MGP_CASTEiJ_P0097385 Tbx22 protein_coding protein_coding MGP_CASTEiJ_T0097386.1 MGP_CASTEiJ_G0034978.1 mouse_genomes_project X 89073562 89084906 + MGP_CASTEiJ_P0097386 Tbx22 protein_coding protein_coding MGP_CASTEiJ_T0097387.1 MGP_CASTEiJ_G0034978.1 mouse_genomes_project X 89073614 89082447 + MGP_CASTEiJ_P0097387 Tbx22 protein_coding protein_coding MGP_CASTEiJ_T0015838.1 MGP_CASTEiJ_G0014001.1 mouse_genomes_project X 69781851 69782162 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015834.1 MGP_CASTEiJ_G0013997.1 mouse_genomes_project X 69055987 69056865 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015950.1 MGP_CASTEiJ_G0014113.1 mouse_genomes_project X 86880184 86880790 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095887.1 MGP_CASTEiJ_G0034553.1 mouse_genomes_project X 8347653 8356297 + MGP_CASTEiJ_P0095887 Gpr34 protein_coding protein_coding MGP_CASTEiJ_T0095888.1 MGP_CASTEiJ_G0034553.1 mouse_genomes_project X 8348333 8356299 + MGP_CASTEiJ_P0095888 Gpr34 protein_coding protein_coding MGP_CASTEiJ_T0016189.1 MGP_CASTEiJ_G0014352.1 mouse_genomes_project X 134995014 134995608 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097589.1 MGP_CASTEiJ_G0035048.1 mouse_genomes_project X 113488309 113494215 + MGP_CASTEiJ_P0097589 protein_coding protein_coding MGP_CASTEiJ_T0015819.1 MGP_CASTEiJ_G0013982.1 mouse_genomes_project X 63999790 64000801 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015569.1 MGP_CASTEiJ_G0013732.1 mouse_genomes_project X 5277313 5277746 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101438.1 MGP_CASTEiJ_G0038351.1 mouse_genomes_project X 56773409 56773527 + Gm25520 snoRNA snoRNA MGP_CASTEiJ_T0096950.1 MGP_CASTEiJ_G0034860.1 mouse_genomes_project X 71125247 71128508 + MGP_CASTEiJ_P0096950 4932429P05Rik protein_coding protein_coding MGP_CASTEiJ_T0095706.1 MGP_CASTEiJ_G0034508.1 mouse_genomes_project X 2380891 2397275 + MGP_CASTEiJ_P0095706 Kcnd1 protein_coding protein_coding MGP_CASTEiJ_T0095707.1 MGP_CASTEiJ_G0034508.1 mouse_genomes_project X 2380909 2381870 + Kcnd1 protein_coding processed_transcript MGP_CASTEiJ_T0097185.1 MGP_CASTEiJ_G0034923.1 mouse_genomes_project X 82592322 82604437 + MGP_CASTEiJ_P0097185 Gjb1 protein_coding protein_coding MGP_CASTEiJ_T0097186.1 MGP_CASTEiJ_G0034923.1 mouse_genomes_project X 82593216 82604437 + MGP_CASTEiJ_P0097186 Gjb1 protein_coding protein_coding MGP_CASTEiJ_T0097187.1 MGP_CASTEiJ_G0034923.1 mouse_genomes_project X 82602540 82604437 + MGP_CASTEiJ_P0097187 Gjb1 protein_coding protein_coding MGP_CASTEiJ_T0016107.1 MGP_CASTEiJ_G0014270.1 mouse_genomes_project X 119957059 119957569 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096787.1 MGP_CASTEiJ_G0034810.1 mouse_genomes_project X 56069244 56089835 - MGP_CASTEiJ_P0096787 G6pdx protein_coding protein_coding MGP_CASTEiJ_T0096788.1 MGP_CASTEiJ_G0034810.1 mouse_genomes_project X 56070620 56089517 - MGP_CASTEiJ_P0096788 G6pdx protein_coding protein_coding MGP_CASTEiJ_T0096789.1 MGP_CASTEiJ_G0034810.1 mouse_genomes_project X 56073562 56089490 - G6pdx protein_coding processed_transcript MGP_CASTEiJ_T0096796.1 MGP_CASTEiJ_G0034810.1 mouse_genomes_project X 56088328 56089521 - G6pdx protein_coding retained_intron MGP_CASTEiJ_T0015708.1 MGP_CASTEiJ_G0013871.1 mouse_genomes_project X 39468561 39470567 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095992.1 MGP_CASTEiJ_G0034586.1 mouse_genomes_project X 15598025 15601166 - MGP_CASTEiJ_P0095992 protein_coding protein_coding MGP_CASTEiJ_T0098036.1 MGP_CASTEiJ_G0035174.1 mouse_genomes_project X 134787054 134836051 - MGP_CASTEiJ_P0098036 Sms protein_coding protein_coding MGP_CASTEiJ_T0098037.1 MGP_CASTEiJ_G0035174.1 mouse_genomes_project X 134799426 134803906 - Sms protein_coding retained_intron MGP_CASTEiJ_T0098038.1 MGP_CASTEiJ_G0035174.1 mouse_genomes_project X 134801916 134835808 - Sms protein_coding retained_intron MGP_CASTEiJ_T0098039.1 MGP_CASTEiJ_G0035174.1 mouse_genomes_project X 134809193 134835148 - MGP_CASTEiJ_P0098039 Sms protein_coding protein_coding MGP_CASTEiJ_T0011433.1 MGP_CASTEiJ_G0009621.1 mouse_genomes_project X 84853628 84853754 - Gm27927 misc_RNA misc_RNA MGP_CASTEiJ_T0015715.1 MGP_CASTEiJ_G0013878.1 mouse_genomes_project X 40888463 40889139 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100238.1 MGP_CASTEiJ_G0037151.1 mouse_genomes_project X 140523946 140524053 - Gm22746 snRNA snRNA MGP_CASTEiJ_T0095995.1 MGP_CASTEiJ_G0034588.1 mouse_genomes_project X 16149720 16178499 + MGP_CASTEiJ_P0095995 Slc6a14 protein_coding protein_coding MGP_CASTEiJ_T0098196.1 MGP_CASTEiJ_G0035209.1 mouse_genomes_project X 141494706 141525000 + MGP_CASTEiJ_P0098196 Tmem27 protein_coding protein_coding MGP_CASTEiJ_T0098197.1 MGP_CASTEiJ_G0035209.1 mouse_genomes_project X 141496057 141524999 + MGP_CASTEiJ_P0098197 Tmem27 protein_coding protein_coding MGP_CASTEiJ_T0098198.1 MGP_CASTEiJ_G0035209.1 mouse_genomes_project X 141498051 141524354 + MGP_CASTEiJ_P0098198 Tmem27 protein_coding protein_coding MGP_CASTEiJ_T0096475.1 MGP_CASTEiJ_G0034754.1 mouse_genomes_project X 53555778 53571829 + MGP_CASTEiJ_P0096475 Fate1 protein_coding protein_coding MGP_CASTEiJ_T0096476.1 MGP_CASTEiJ_G0034754.1 mouse_genomes_project X 53564290 53571829 + MGP_CASTEiJ_P0096476 Fate1 protein_coding protein_coding MGP_CASTEiJ_T0096477.1 MGP_CASTEiJ_G0034754.1 mouse_genomes_project X 53565937 53571552 + Fate1 protein_coding processed_transcript MGP_CASTEiJ_T0015583.1 MGP_CASTEiJ_G0013746.1 mouse_genomes_project X 7634473 7635715 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010841.1 MGP_CASTEiJ_G0009029.1 mouse_genomes_project X 48414238 48414316 - Mir883b miRNA miRNA MGP_CASTEiJ_T0096358.1 MGP_CASTEiJ_G0034715.1 mouse_genomes_project X 39260962 39268065 - MGP_CASTEiJ_P0096358 Gpr101 protein_coding protein_coding MGP_CASTEiJ_T0096319.1 MGP_CASTEiJ_G0034705.1 mouse_genomes_project X 38458430 38524271 + MGP_CASTEiJ_P0096319 Fhl1 protein_coding protein_coding MGP_CASTEiJ_T0096320.1 MGP_CASTEiJ_G0034705.1 mouse_genomes_project X 38510355 38524273 + MGP_CASTEiJ_P0096320 Fhl1 protein_coding protein_coding MGP_CASTEiJ_T0096321.1 MGP_CASTEiJ_G0034705.1 mouse_genomes_project X 38510641 38524273 + MGP_CASTEiJ_P0096321 Fhl1 protein_coding protein_coding MGP_CASTEiJ_T0096322.1 MGP_CASTEiJ_G0034705.1 mouse_genomes_project X 38510736 38520137 + MGP_CASTEiJ_P0096322 Fhl1 protein_coding protein_coding MGP_CASTEiJ_T0096323.1 MGP_CASTEiJ_G0034705.1 mouse_genomes_project X 38516178 38548282 + MGP_CASTEiJ_P0096323 Fhl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096324.1 MGP_CASTEiJ_G0034705.1 mouse_genomes_project X 38517419 38521600 + MGP_CASTEiJ_P0096324 Fhl1 protein_coding protein_coding MGP_CASTEiJ_T0096325.1 MGP_CASTEiJ_G0034705.1 mouse_genomes_project X 38518657 38520187 + MGP_CASTEiJ_P0096325 Fhl1 protein_coding protein_coding MGP_CASTEiJ_T0096326.1 MGP_CASTEiJ_G0034705.1 mouse_genomes_project X 38518921 38522932 + MGP_CASTEiJ_P0096326 Fhl1 protein_coding protein_coding MGP_CASTEiJ_T0096327.1 MGP_CASTEiJ_G0034705.1 mouse_genomes_project X 38518930 38520675 + Fhl1 protein_coding processed_transcript MGP_CASTEiJ_T0015805.1 MGP_CASTEiJ_G0013968.1 mouse_genomes_project X 60224230 60225214 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096470.1 MGP_CASTEiJ_G0034752.1 mouse_genomes_project X 53500505 53518528 + MGP_CASTEiJ_P0096470 Gm1141 protein_coding protein_coding MGP_CASTEiJ_T0096471.1 MGP_CASTEiJ_G0034752.1 mouse_genomes_project X 53506167 53514029 + MGP_CASTEiJ_P0096471 Gm1141 protein_coding protein_coding MGP_CASTEiJ_T0015720.1 MGP_CASTEiJ_G0013883.1 mouse_genomes_project X 42265300 42267232 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011424.1 MGP_CASTEiJ_G0009612.1 mouse_genomes_project X 32961881 32962176 + Gm23385 misc_RNA misc_RNA MGP_CASTEiJ_T0096415.1 MGP_CASTEiJ_G0034737.1 mouse_genomes_project X 50327002 50373053 + MGP_CASTEiJ_P0096415 Fmr1nb protein_coding protein_coding MGP_CASTEiJ_T0096416.1 MGP_CASTEiJ_G0034737.1 mouse_genomes_project X 50327044 50373053 + MGP_CASTEiJ_P0096416 Fmr1nb protein_coding protein_coding MGP_CASTEiJ_T0096417.1 MGP_CASTEiJ_G0034737.1 mouse_genomes_project X 50327097 50373053 + MGP_CASTEiJ_P0096417 Fmr1nb protein_coding protein_coding MGP_CASTEiJ_T0009165.1 MGP_CASTEiJ_G0007375.1 mouse_genomes_project X 81939772 81947825 + Gm14902 lincRNA lincRNA MGP_CASTEiJ_T0097047.1 MGP_CASTEiJ_G0034888.1 mouse_genomes_project X 77622503 77648195 - MGP_CASTEiJ_P0097047 Vsig4 protein_coding protein_coding MGP_CASTEiJ_T0097048.1 MGP_CASTEiJ_G0034888.1 mouse_genomes_project X 77625248 77648169 - Vsig4 protein_coding processed_transcript MGP_CASTEiJ_T0096034.1 MGP_CASTEiJ_G0034603.1 mouse_genomes_project X 20223563 20267698 - MGP_CASTEiJ_P0096034 C330007P06Rik protein_coding protein_coding MGP_CASTEiJ_T0096035.1 MGP_CASTEiJ_G0034603.1 mouse_genomes_project X 20240007 20258452 - C330007P06Rik protein_coding retained_intron MGP_CASTEiJ_T0096036.1 MGP_CASTEiJ_G0034603.1 mouse_genomes_project X 20249998 20267706 - MGP_CASTEiJ_P0096036 C330007P06Rik protein_coding protein_coding MGP_CASTEiJ_T0096037.1 MGP_CASTEiJ_G0034603.1 mouse_genomes_project X 20252544 20272071 - MGP_CASTEiJ_P0096037 C330007P06Rik protein_coding protein_coding MGP_CASTEiJ_T0015766.1 MGP_CASTEiJ_G0013929.1 mouse_genomes_project X 50484349 50485205 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096059.1 MGP_CASTEiJ_G0034614.1 mouse_genomes_project X 20633281 20634975 - MGP_CASTEiJ_P0096059 Gm9 protein_coding protein_coding MGP_CASTEiJ_T0010816.1 MGP_CASTEiJ_G0009004.1 mouse_genomes_project X 25160332 25160459 + Gm44490 miRNA miRNA MGP_CASTEiJ_T0097627.1 MGP_CASTEiJ_G0035064.1 mouse_genomes_project X 114504693 114662388 - MGP_CASTEiJ_P0097627 Bex1 protein_coding protein_coding MGP_CASTEiJ_T0097628.1 MGP_CASTEiJ_G0035064.1 mouse_genomes_project X 114504694 114662368 - MGP_CASTEiJ_P0097628 Bex1 protein_coding protein_coding MGP_CASTEiJ_T0097629.1 MGP_CASTEiJ_G0035064.1 mouse_genomes_project X 114504734 114662368 - MGP_CASTEiJ_P0097629 Bex1 protein_coding protein_coding MGP_CASTEiJ_T0097630.1 MGP_CASTEiJ_G0035064.1 mouse_genomes_project X 114506967 114662341 - Bex1 protein_coding retained_intron MGP_CASTEiJ_T0015600.1 MGP_CASTEiJ_G0013763.1 mouse_genomes_project X 11119160 11121317 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097126.1 MGP_CASTEiJ_G0034910.1 mouse_genomes_project X 81817257 81820311 - Pdzd11 protein_coding retained_intron MGP_CASTEiJ_T0097127.1 MGP_CASTEiJ_G0034910.1 mouse_genomes_project X 81817260 81820941 - MGP_CASTEiJ_P0097127 Pdzd11 protein_coding protein_coding MGP_CASTEiJ_T0097128.1 MGP_CASTEiJ_G0034910.1 mouse_genomes_project X 81817282 81820308 - MGP_CASTEiJ_P0097128 Pdzd11 protein_coding protein_coding MGP_CASTEiJ_T0097129.1 MGP_CASTEiJ_G0034910.1 mouse_genomes_project X 81817758 81820644 - Pdzd11 protein_coding processed_transcript MGP_CASTEiJ_T0005420.1 MGP_CASTEiJ_G0004581.1 mouse_genomes_project X 2120770 2128192 + Ppp1r3fos antisense antisense MGP_CASTEiJ_T0005421.1 MGP_CASTEiJ_G0004581.1 mouse_genomes_project X 2121662 2125594 + Ppp1r3fos antisense antisense MGP_CASTEiJ_T0010833.1 MGP_CASTEiJ_G0009021.1 mouse_genomes_project X 40785747 40785826 - Mir504 miRNA miRNA MGP_CASTEiJ_T0100174.1 MGP_CASTEiJ_G0037087.1 mouse_genomes_project X 11875853 11875957 + Gm22294 snRNA snRNA MGP_CASTEiJ_T0015633.1 MGP_CASTEiJ_G0013796.1 mouse_genomes_project X 19761112 19761406 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011438.1 MGP_CASTEiJ_G0009626.1 mouse_genomes_project X 84998779 84998906 + Gm27285 misc_RNA misc_RNA MGP_CASTEiJ_T0015711.1 MGP_CASTEiJ_G0013874.1 mouse_genomes_project X 39933312 39933636 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095907.1 MGP_CASTEiJ_G0034564.1 mouse_genomes_project X 12719799 12855211 + MGP_CASTEiJ_P0095907 protein_coding protein_coding MGP_CASTEiJ_T0095908.1 MGP_CASTEiJ_G0034564.1 mouse_genomes_project X 12719799 12855211 + MGP_CASTEiJ_P0095908 protein_coding protein_coding MGP_CASTEiJ_T0095909.1 MGP_CASTEiJ_G0034564.1 mouse_genomes_project X 12719872 12828754 + protein_coding retained_intron MGP_CASTEiJ_T0095910.1 MGP_CASTEiJ_G0034564.1 mouse_genomes_project X 12848332 12852096 + protein_coding retained_intron MGP_CASTEiJ_T0101444.1 MGP_CASTEiJ_G0038357.1 mouse_genomes_project X 74566563 74566646 + Gm24123 snoRNA snoRNA MGP_CASTEiJ_T0096549.1 MGP_CASTEiJ_G0034781.1 mouse_genomes_project X 55369042 55373793 + MGP_CASTEiJ_P0096549 Srpk3 protein_coding protein_coding MGP_CASTEiJ_T0096550.1 MGP_CASTEiJ_G0034781.1 mouse_genomes_project X 55369068 55373784 + Srpk3 protein_coding retained_intron MGP_CASTEiJ_T0096551.1 MGP_CASTEiJ_G0034781.1 mouse_genomes_project X 55372803 55373461 + Srpk3 protein_coding retained_intron MGP_CASTEiJ_T0096552.1 MGP_CASTEiJ_G0034781.1 mouse_genomes_project X 55372836 55373587 + Srpk3 protein_coding retained_intron MGP_CASTEiJ_T0095594.1 MGP_CASTEiJ_G0034484.1 mouse_genomes_project X 623305 625507 - MGP_CASTEiJ_P0095594 AU022751 protein_coding protein_coding MGP_CASTEiJ_T0095595.1 MGP_CASTEiJ_G0034484.1 mouse_genomes_project X 623305 625507 - MGP_CASTEiJ_P0095595 AU022751 protein_coding protein_coding MGP_CASTEiJ_T0096503.1 MGP_CASTEiJ_G0034768.1 mouse_genomes_project X 54768069 54770560 + MGP_CASTEiJ_P0096503 F8a protein_coding protein_coding MGP_CASTEiJ_T0096738.1 MGP_CASTEiJ_G0034802.1 mouse_genomes_project X 55958454 55968848 + MGP_CASTEiJ_P0096738 Gdi1 protein_coding protein_coding MGP_CASTEiJ_T0096739.1 MGP_CASTEiJ_G0034802.1 mouse_genomes_project X 55958468 55968846 + Gdi1 protein_coding retained_intron MGP_CASTEiJ_T0096740.1 MGP_CASTEiJ_G0034802.1 mouse_genomes_project X 55958712 55960964 + Gdi1 protein_coding processed_transcript MGP_CASTEiJ_T0096741.1 MGP_CASTEiJ_G0034802.1 mouse_genomes_project X 55958723 55968844 + Gdi1 protein_coding retained_intron MGP_CASTEiJ_T0096742.1 MGP_CASTEiJ_G0034802.1 mouse_genomes_project X 55958769 55961101 + MGP_CASTEiJ_P0096742 Gdi1 protein_coding protein_coding MGP_CASTEiJ_T0096743.1 MGP_CASTEiJ_G0034802.1 mouse_genomes_project X 55959283 55961142 + Gdi1 protein_coding processed_transcript MGP_CASTEiJ_T0096744.1 MGP_CASTEiJ_G0034802.1 mouse_genomes_project X 55961105 55963519 + Gdi1 protein_coding retained_intron MGP_CASTEiJ_T0096745.1 MGP_CASTEiJ_G0034802.1 mouse_genomes_project X 55963814 55964899 + Gdi1 protein_coding processed_transcript MGP_CASTEiJ_T0096746.1 MGP_CASTEiJ_G0034802.1 mouse_genomes_project X 55964343 55964957 + Gdi1 protein_coding processed_transcript MGP_CASTEiJ_T0016092.1 MGP_CASTEiJ_G0014255.1 mouse_genomes_project X 116775494 116776737 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097504.1 MGP_CASTEiJ_G0035024.1 mouse_genomes_project X 112164642 112192126 + MGP_CASTEiJ_P0097504 Cstf2 protein_coding protein_coding MGP_CASTEiJ_T0097505.1 MGP_CASTEiJ_G0035024.1 mouse_genomes_project X 112164652 112192899 + MGP_CASTEiJ_P0097505 Cstf2 protein_coding protein_coding MGP_CASTEiJ_T0097506.1 MGP_CASTEiJ_G0035024.1 mouse_genomes_project X 112164670 112181137 + MGP_CASTEiJ_P0097506 Cstf2 protein_coding protein_coding MGP_CASTEiJ_T0097507.1 MGP_CASTEiJ_G0035024.1 mouse_genomes_project X 112164766 112166937 + Cstf2 protein_coding processed_transcript MGP_CASTEiJ_T0097508.1 MGP_CASTEiJ_G0035024.1 mouse_genomes_project X 112164789 112192899 + Cstf2 protein_coding retained_intron MGP_CASTEiJ_T0097509.1 MGP_CASTEiJ_G0035024.1 mouse_genomes_project X 112164789 112168074 + MGP_CASTEiJ_P0097509 Cstf2 protein_coding protein_coding MGP_CASTEiJ_T0097510.1 MGP_CASTEiJ_G0035024.1 mouse_genomes_project X 112167837 112179547 + MGP_CASTEiJ_P0097510 Cstf2 protein_coding protein_coding MGP_CASTEiJ_T0097511.1 MGP_CASTEiJ_G0035024.1 mouse_genomes_project X 112171701 112179584 + MGP_CASTEiJ_P0097511 Cstf2 protein_coding protein_coding MGP_CASTEiJ_T0097715.1 MGP_CASTEiJ_G0035097.1 mouse_genomes_project X 118166514 118207383 - MGP_CASTEiJ_P0097715 Morc4 protein_coding protein_coding MGP_CASTEiJ_T0097716.1 MGP_CASTEiJ_G0035097.1 mouse_genomes_project X 118169521 118221127 - MGP_CASTEiJ_P0097716 Morc4 protein_coding protein_coding MGP_CASTEiJ_T0097717.1 MGP_CASTEiJ_G0035097.1 mouse_genomes_project X 118169793 118221150 - MGP_CASTEiJ_P0097717 Morc4 protein_coding protein_coding MGP_CASTEiJ_T0097718.1 MGP_CASTEiJ_G0035097.1 mouse_genomes_project X 118172123 118184020 - Morc4 protein_coding retained_intron MGP_CASTEiJ_T0097719.1 MGP_CASTEiJ_G0035097.1 mouse_genomes_project X 118184378 118202569 - MGP_CASTEiJ_P0097719 Morc4 protein_coding protein_coding MGP_CASTEiJ_T0097720.1 MGP_CASTEiJ_G0035097.1 mouse_genomes_project X 118205836 118221098 - Morc4 protein_coding retained_intron MGP_CASTEiJ_T0097721.1 MGP_CASTEiJ_G0035097.1 mouse_genomes_project X 118205843 118221095 - Morc4 protein_coding processed_transcript MGP_CASTEiJ_T0097722.1 MGP_CASTEiJ_G0035097.1 mouse_genomes_project X 118208254 118220883 - Morc4 protein_coding retained_intron MGP_CASTEiJ_T0097723.1 MGP_CASTEiJ_G0035097.1 mouse_genomes_project X 118208288 118220846 - MGP_CASTEiJ_P0097723 Morc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097724.1 MGP_CASTEiJ_G0035097.1 mouse_genomes_project X 118208402 118220672 - MGP_CASTEiJ_P0097724 Morc4 protein_coding protein_coding MGP_CASTEiJ_T0098209.1 MGP_CASTEiJ_G0035213.1 mouse_genomes_project X 141785119 141816041 + MGP_CASTEiJ_P0098209 Vegfd protein_coding protein_coding MGP_CASTEiJ_T0098210.1 MGP_CASTEiJ_G0035213.1 mouse_genomes_project X 141804596 141814114 + Vegfd protein_coding retained_intron MGP_CASTEiJ_T0095658.1 MGP_CASTEiJ_G0034503.1 mouse_genomes_project X 2274567 2278881 + MGP_CASTEiJ_P0095658 Wdr45 protein_coding protein_coding MGP_CASTEiJ_T0095659.1 MGP_CASTEiJ_G0034503.1 mouse_genomes_project X 2274813 2280779 + MGP_CASTEiJ_P0095659 Wdr45 protein_coding protein_coding MGP_CASTEiJ_T0095660.1 MGP_CASTEiJ_G0034503.1 mouse_genomes_project X 2274833 2280569 + MGP_CASTEiJ_P0095660 Wdr45 protein_coding protein_coding MGP_CASTEiJ_T0095661.1 MGP_CASTEiJ_G0034503.1 mouse_genomes_project X 2274842 2280780 + MGP_CASTEiJ_P0095661 Wdr45 protein_coding protein_coding MGP_CASTEiJ_T0095662.1 MGP_CASTEiJ_G0034503.1 mouse_genomes_project X 2274843 2278881 + MGP_CASTEiJ_P0095662 Wdr45 protein_coding protein_coding MGP_CASTEiJ_T0095663.1 MGP_CASTEiJ_G0034503.1 mouse_genomes_project X 2274843 2280761 + MGP_CASTEiJ_P0095663 Wdr45 protein_coding protein_coding MGP_CASTEiJ_T0095664.1 MGP_CASTEiJ_G0034503.1 mouse_genomes_project X 2274853 2280529 + MGP_CASTEiJ_P0095664 Wdr45 protein_coding protein_coding MGP_CASTEiJ_T0095665.1 MGP_CASTEiJ_G0034503.1 mouse_genomes_project X 2274948 2276826 + MGP_CASTEiJ_P0095665 Wdr45 protein_coding protein_coding MGP_CASTEiJ_T0095666.1 MGP_CASTEiJ_G0034503.1 mouse_genomes_project X 2274950 2278865 + MGP_CASTEiJ_P0095666 Wdr45 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095667.1 MGP_CASTEiJ_G0034503.1 mouse_genomes_project X 2274955 2278880 + MGP_CASTEiJ_P0095667 Wdr45 protein_coding protein_coding MGP_CASTEiJ_T0095668.1 MGP_CASTEiJ_G0034503.1 mouse_genomes_project X 2275326 2278921 + Wdr45 protein_coding processed_transcript MGP_CASTEiJ_T0095669.1 MGP_CASTEiJ_G0034503.1 mouse_genomes_project X 2275508 2280582 + MGP_CASTEiJ_P0095669 Wdr45 protein_coding protein_coding MGP_CASTEiJ_T0095670.1 MGP_CASTEiJ_G0034503.1 mouse_genomes_project X 2275863 2278616 + MGP_CASTEiJ_P0095670 Wdr45 protein_coding protein_coding MGP_CASTEiJ_T0095671.1 MGP_CASTEiJ_G0034503.1 mouse_genomes_project X 2276093 2278469 + Wdr45 protein_coding processed_transcript MGP_CASTEiJ_T0095672.1 MGP_CASTEiJ_G0034503.1 mouse_genomes_project X 2279160 2280078 + Wdr45 protein_coding processed_transcript MGP_CASTEiJ_T0016026.1 MGP_CASTEiJ_G0014189.1 mouse_genomes_project X 101857396 101858566 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098028.1 MGP_CASTEiJ_G0035170.1 mouse_genomes_project X 132712480 132727557 - MGP_CASTEiJ_P0098028 Prdx4 protein_coding protein_coding MGP_CASTEiJ_T0098029.1 MGP_CASTEiJ_G0035170.1 mouse_genomes_project X 132717025 132729844 - MGP_CASTEiJ_P0098029 Prdx4 protein_coding protein_coding MGP_CASTEiJ_T0098030.1 MGP_CASTEiJ_G0035170.1 mouse_genomes_project X 132725874 132727564 - Prdx4 protein_coding processed_transcript MGP_CASTEiJ_T0097771.1 MGP_CASTEiJ_G0035112.1 mouse_genomes_project X 120047572 120061923 - MGP_CASTEiJ_P0097771 Irs4 protein_coding protein_coding MGP_CASTEiJ_T0096097.1 MGP_CASTEiJ_G0034631.1 mouse_genomes_project X 21932184 21950272 + MGP_CASTEiJ_P0096097 protein_coding protein_coding MGP_CASTEiJ_T0096098.1 MGP_CASTEiJ_G0034631.1 mouse_genomes_project X 21938011 21948803 + protein_coding processed_transcript MGP_CASTEiJ_T0096099.1 MGP_CASTEiJ_G0034631.1 mouse_genomes_project X 21938732 21943556 + protein_coding processed_transcript MGP_CASTEiJ_T0096100.1 MGP_CASTEiJ_G0034631.1 mouse_genomes_project X 21945692 21950396 + protein_coding processed_transcript MGP_CASTEiJ_T0096101.1 MGP_CASTEiJ_G0034631.1 mouse_genomes_project X 21946772 21950370 + protein_coding processed_transcript MGP_CASTEiJ_T0096806.1 MGP_CASTEiJ_G0034812.1 mouse_genomes_project X 56260665 56261613 + MGP_CASTEiJ_P0096806 Olfr1325 protein_coding protein_coding MGP_CASTEiJ_T0098122.1 MGP_CASTEiJ_G0035190.1 mouse_genomes_project X 137966870 138059840 - MGP_CASTEiJ_P0098122 Ppef1 protein_coding protein_coding MGP_CASTEiJ_T0098123.1 MGP_CASTEiJ_G0035190.1 mouse_genomes_project X 137967280 138089362 - MGP_CASTEiJ_P0098123 Ppef1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0098124.1 MGP_CASTEiJ_G0035190.1 mouse_genomes_project X 137984353 138073039 - MGP_CASTEiJ_P0098124 Ppef1 protein_coding protein_coding MGP_CASTEiJ_T0098125.1 MGP_CASTEiJ_G0035190.1 mouse_genomes_project X 138034167 138059804 - MGP_CASTEiJ_P0098125 Ppef1 protein_coding protein_coding MGP_CASTEiJ_T0095605.1 MGP_CASTEiJ_G0034490.1 mouse_genomes_project X 1580968 1592566 + MGP_CASTEiJ_P0095605 Akap4 protein_coding protein_coding MGP_CASTEiJ_T0095606.1 MGP_CASTEiJ_G0034490.1 mouse_genomes_project X 1580969 1592561 + MGP_CASTEiJ_P0095606 Akap4 protein_coding protein_coding MGP_CASTEiJ_T0095607.1 MGP_CASTEiJ_G0034490.1 mouse_genomes_project X 1581663 1592548 + MGP_CASTEiJ_P0095607 Akap4 protein_coding protein_coding MGP_CASTEiJ_T0016070.1 MGP_CASTEiJ_G0014233.1 mouse_genomes_project X 113415000 113415753 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096353.1 MGP_CASTEiJ_G0034713.1 mouse_genomes_project X 39139486 39148943 - MGP_CASTEiJ_P0096353 Rbmx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096354.1 MGP_CASTEiJ_G0034713.1 mouse_genomes_project X 39141986 39148998 - MGP_CASTEiJ_P0096354 Rbmx protein_coding protein_coding MGP_CASTEiJ_T0096355.1 MGP_CASTEiJ_G0034713.1 mouse_genomes_project X 39143039 39148942 - MGP_CASTEiJ_P0096355 Rbmx protein_coding protein_coding MGP_CASTEiJ_T0096356.1 MGP_CASTEiJ_G0034713.1 mouse_genomes_project X 39146102 39148759 - MGP_CASTEiJ_P0096356 Rbmx protein_coding protein_coding MGP_CASTEiJ_T0016119.1 MGP_CASTEiJ_G0014282.1 mouse_genomes_project X 120729861 120730352 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096145.1 MGP_CASTEiJ_G0034640.1 mouse_genomes_project X 25709282 25943409 - MGP_CASTEiJ_P0096145 Tenm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096152.1 MGP_CASTEiJ_G0034640.1 mouse_genomes_project X 25755721 26381962 - MGP_CASTEiJ_P0096152 Tenm1 protein_coding protein_coding MGP_CASTEiJ_T0096153.1 MGP_CASTEiJ_G0034640.1 mouse_genomes_project X 25755721 26381983 - MGP_CASTEiJ_P0096153 Tenm1 protein_coding protein_coding MGP_CASTEiJ_T0096154.1 MGP_CASTEiJ_G0034640.1 mouse_genomes_project X 25760246 26477827 - MGP_CASTEiJ_P0096154 Tenm1 protein_coding protein_coding MGP_CASTEiJ_T0096155.1 MGP_CASTEiJ_G0034640.1 mouse_genomes_project X 26034462 26641518 - Tenm1 protein_coding retained_intron MGP_CASTEiJ_T0096156.1 MGP_CASTEiJ_G0034640.1 mouse_genomes_project X 26110196 26641643 - Tenm1 protein_coding retained_intron MGP_CASTEiJ_T0097453.1 MGP_CASTEiJ_G0035002.1 mouse_genomes_project X 95500415 95568393 + MGP_CASTEiJ_P0097453 Klhl4 protein_coding protein_coding MGP_CASTEiJ_T0097454.1 MGP_CASTEiJ_G0035002.1 mouse_genomes_project X 95500415 95568393 + MGP_CASTEiJ_P0097454 Klhl4 protein_coding protein_coding MGP_CASTEiJ_T0097455.1 MGP_CASTEiJ_G0035002.1 mouse_genomes_project X 95500686 95568072 + MGP_CASTEiJ_P0097455 Klhl4 protein_coding protein_coding MGP_CASTEiJ_T0097835.1 MGP_CASTEiJ_G0035130.1 mouse_genomes_project X 125211316 125343411 + Htr2c protein_coding retained_intron MGP_CASTEiJ_T0097836.1 MGP_CASTEiJ_G0035130.1 mouse_genomes_project X 125211316 125244278 + Htr2c protein_coding retained_intron MGP_CASTEiJ_T0097837.1 MGP_CASTEiJ_G0035130.1 mouse_genomes_project X 125211433 125337068 + Htr2c protein_coding processed_transcript MGP_CASTEiJ_T0097838.1 MGP_CASTEiJ_G0035130.1 mouse_genomes_project X 125211826 125450315 + MGP_CASTEiJ_P0097838 Htr2c protein_coding protein_coding MGP_CASTEiJ_T0097839.1 MGP_CASTEiJ_G0035130.1 mouse_genomes_project X 125336050 125464424 + MGP_CASTEiJ_P0097839 Htr2c protein_coding protein_coding MGP_CASTEiJ_T0015890.1 MGP_CASTEiJ_G0014053.1 mouse_genomes_project X 77567381 77567821 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095717.1 MGP_CASTEiJ_G0034510.1 mouse_genomes_project X 2439371 2441412 + Pim2 protein_coding retained_intron MGP_CASTEiJ_T0095718.1 MGP_CASTEiJ_G0034510.1 mouse_genomes_project X 2439411 2445982 + MGP_CASTEiJ_P0095718 Pim2 protein_coding protein_coding MGP_CASTEiJ_T0095719.1 MGP_CASTEiJ_G0034510.1 mouse_genomes_project X 2439415 2445978 + MGP_CASTEiJ_P0095719 Pim2 protein_coding protein_coding MGP_CASTEiJ_T0095720.1 MGP_CASTEiJ_G0034510.1 mouse_genomes_project X 2439727 2442489 + Pim2 protein_coding processed_transcript MGP_CASTEiJ_T0097303.1 MGP_CASTEiJ_G0034960.1 mouse_genomes_project X 86898363 86899275 + MGP_CASTEiJ_P0097303 Cypt3 protein_coding protein_coding MGP_CASTEiJ_T0097304.1 MGP_CASTEiJ_G0034960.1 mouse_genomes_project X 86898363 86899269 + MGP_CASTEiJ_P0097304 Cypt3 protein_coding protein_coding MGP_CASTEiJ_T0010808.1 MGP_CASTEiJ_G0008996.1 mouse_genomes_project X 13637416 13637495 - Mir222 miRNA miRNA MGP_CASTEiJ_T0016124.1 MGP_CASTEiJ_G0014287.1 mouse_genomes_project X 121112908 121113371 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097335.1 MGP_CASTEiJ_G0034963.1 mouse_genomes_project X 87330500 87376325 - MGP_CASTEiJ_P0097335 Magt1 protein_coding protein_coding MGP_CASTEiJ_T0097336.1 MGP_CASTEiJ_G0034963.1 mouse_genomes_project X 87330500 87376332 - MGP_CASTEiJ_P0097336 Magt1 protein_coding protein_coding MGP_CASTEiJ_T0097337.1 MGP_CASTEiJ_G0034963.1 mouse_genomes_project X 87332427 87376212 - MGP_CASTEiJ_P0097337 Magt1 protein_coding protein_coding MGP_CASTEiJ_T0097338.1 MGP_CASTEiJ_G0034963.1 mouse_genomes_project X 87339250 87376206 - MGP_CASTEiJ_P0097338 Magt1 protein_coding protein_coding MGP_CASTEiJ_T0009141.1 MGP_CASTEiJ_G0007356.1 mouse_genomes_project X 21817610 21824150 + Gm7598 lincRNA lincRNA MGP_CASTEiJ_T0015992.1 MGP_CASTEiJ_G0014155.1 mouse_genomes_project X 95065535 95066886 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015572.1 MGP_CASTEiJ_G0013735.1 mouse_genomes_project X 6216184 6216400 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015704.1 MGP_CASTEiJ_G0013867.1 mouse_genomes_project X 37867560 37868130 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102636.1 MGP_CASTEiJ_G0039360.1 mouse_genomes_project X 67711268 67712301 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000301.1 MGP_CASTEiJ_G0000250.1 mouse_genomes_project X 117183004 117183438 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0096862.1 MGP_CASTEiJ_G0034826.1 mouse_genomes_project X 57189719 57199522 + MGP_CASTEiJ_P0096862 Vbp1 protein_coding protein_coding MGP_CASTEiJ_T0096863.1 MGP_CASTEiJ_G0034826.1 mouse_genomes_project X 57189719 57211044 + MGP_CASTEiJ_P0096863 Vbp1 protein_coding protein_coding MGP_CASTEiJ_T0096864.1 MGP_CASTEiJ_G0034826.1 mouse_genomes_project X 57189737 57197237 + Vbp1 protein_coding retained_intron MGP_CASTEiJ_T0009154.1 MGP_CASTEiJ_G0007365.1 mouse_genomes_project X 54488372 54488894 + Gm14684 lincRNA lincRNA MGP_CASTEiJ_T0096288.1 MGP_CASTEiJ_G0034686.1 mouse_genomes_project X 36217197 36245705 + MGP_CASTEiJ_P0096288 Fam122c protein_coding protein_coding MGP_CASTEiJ_T0096289.1 MGP_CASTEiJ_G0034686.1 mouse_genomes_project X 36217197 36277008 + MGP_CASTEiJ_P0096289 Fam122c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096290.1 MGP_CASTEiJ_G0034686.1 mouse_genomes_project X 36217206 36277008 + MGP_CASTEiJ_P0096290 Fam122c protein_coding protein_coding MGP_CASTEiJ_T0098261.1 MGP_CASTEiJ_G0035226.1 mouse_genomes_project X 143859970 143926491 - MGP_CASTEiJ_P0098261 Egfl6 protein_coding protein_coding MGP_CASTEiJ_T0096585.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55498953 55519173 - MGP_CASTEiJ_P0096585 Arhgap4 protein_coding protein_coding MGP_CASTEiJ_T0096590.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55501863 55519167 - MGP_CASTEiJ_P0096590 Arhgap4 protein_coding protein_coding MGP_CASTEiJ_T0096591.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55501869 55519133 - MGP_CASTEiJ_P0096591 Arhgap4 protein_coding protein_coding MGP_CASTEiJ_T0096592.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55502043 55519108 - Arhgap4 protein_coding retained_intron MGP_CASTEiJ_T0096593.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55502043 55519108 - Arhgap4 protein_coding retained_intron MGP_CASTEiJ_T0096594.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55502043 55519108 - Arhgap4 protein_coding retained_intron MGP_CASTEiJ_T0096595.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55502043 55519108 - Arhgap4 protein_coding retained_intron MGP_CASTEiJ_T0096596.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55502043 55519108 - Arhgap4 protein_coding retained_intron MGP_CASTEiJ_T0096597.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55502043 55519108 - MGP_CASTEiJ_P0096597 Arhgap4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096598.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55502043 55519108 - MGP_CASTEiJ_P0096598 Arhgap4 protein_coding protein_coding MGP_CASTEiJ_T0096599.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55502049 55519108 - MGP_CASTEiJ_P0096599 Arhgap4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096600.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55502187 55519066 - MGP_CASTEiJ_P0096600 Arhgap4 protein_coding protein_coding MGP_CASTEiJ_T0096601.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55503922 55504938 - Arhgap4 protein_coding processed_transcript MGP_CASTEiJ_T0096602.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55504325 55505578 - MGP_CASTEiJ_P0096602 Arhgap4 protein_coding protein_coding MGP_CASTEiJ_T0096603.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55504382 55507177 - MGP_CASTEiJ_P0096603 Arhgap4 protein_coding protein_coding MGP_CASTEiJ_T0096604.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55506863 55530251 - Arhgap4 protein_coding retained_intron MGP_CASTEiJ_T0096605.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55506867 55508289 - Arhgap4 protein_coding processed_transcript MGP_CASTEiJ_T0096606.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55507659 55513419 - MGP_CASTEiJ_P0096606 Arhgap4 protein_coding protein_coding MGP_CASTEiJ_T0096607.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55514151 55519135 - Arhgap4 protein_coding processed_transcript MGP_CASTEiJ_T0096608.1 MGP_CASTEiJ_G0034786.1 mouse_genomes_project X 55514536 55519130 - MGP_CASTEiJ_P0096608 Arhgap4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0100208.1 MGP_CASTEiJ_G0037121.1 mouse_genomes_project X 85407072 85407179 - Gm23378 snRNA snRNA MGP_CASTEiJ_T0011441.1 MGP_CASTEiJ_G0009629.1 mouse_genomes_project X 105594160 105594435 + Gm22636 misc_RNA misc_RNA MGP_CASTEiJ_T0100232.1 MGP_CASTEiJ_G0037145.1 mouse_genomes_project X 130953223 130953330 - Gm25793 snRNA snRNA MGP_CASTEiJ_T0098265.1 MGP_CASTEiJ_G0035228.1 mouse_genomes_project X 144600496 144620733 - MGP_CASTEiJ_P0098265 Tlr8 protein_coding protein_coding MGP_CASTEiJ_T0098266.1 MGP_CASTEiJ_G0035228.1 mouse_genomes_project X 144600532 144620235 - MGP_CASTEiJ_P0098266 Tlr8 protein_coding protein_coding MGP_CASTEiJ_T0098267.1 MGP_CASTEiJ_G0035228.1 mouse_genomes_project X 144602619 144620746 - Tlr8 protein_coding processed_transcript MGP_CASTEiJ_T0098268.1 MGP_CASTEiJ_G0035228.1 mouse_genomes_project X 144603343 144620776 - MGP_CASTEiJ_P0098268 Tlr8 protein_coding protein_coding MGP_CASTEiJ_T0098269.1 MGP_CASTEiJ_G0035228.1 mouse_genomes_project X 144615809 144620731 - Tlr8 protein_coding processed_transcript MGP_CASTEiJ_T0015900.1 MGP_CASTEiJ_G0014063.1 mouse_genomes_project X 79678968 79679456 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011436.1 MGP_CASTEiJ_G0009624.1 mouse_genomes_project X 84987336 84987407 + Gm27798 misc_RNA misc_RNA MGP_CASTEiJ_T0015772.1 MGP_CASTEiJ_G0013935.1 mouse_genomes_project X 52190384 52190760 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015913.1 MGP_CASTEiJ_G0014076.1 mouse_genomes_project X 82744866 82746127 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100228.1 MGP_CASTEiJ_G0037141.1 mouse_genomes_project X 123934756 123934854 - Gm27659 snRNA snRNA MGP_CASTEiJ_T0095846.1 MGP_CASTEiJ_G0034545.1 mouse_genomes_project X 6690875 6736886 - MGP_CASTEiJ_P0095846 Bcor protein_coding protein_coding MGP_CASTEiJ_T0095847.1 MGP_CASTEiJ_G0034545.1 mouse_genomes_project X 6690875 6736886 - MGP_CASTEiJ_P0095847 Bcor protein_coding protein_coding MGP_CASTEiJ_T0095848.1 MGP_CASTEiJ_G0034545.1 mouse_genomes_project X 6690875 6736886 - MGP_CASTEiJ_P0095848 Bcor protein_coding protein_coding MGP_CASTEiJ_T0095849.1 MGP_CASTEiJ_G0034545.1 mouse_genomes_project X 6690875 6736886 - MGP_CASTEiJ_P0095849 Bcor protein_coding protein_coding MGP_CASTEiJ_T0095850.1 MGP_CASTEiJ_G0034545.1 mouse_genomes_project X 6690878 6820768 - MGP_CASTEiJ_P0095850 Bcor protein_coding protein_coding MGP_CASTEiJ_T0095851.1 MGP_CASTEiJ_G0034545.1 mouse_genomes_project X 6691666 6733505 - MGP_CASTEiJ_P0095851 Bcor protein_coding unknown_likely_coding MGP_CASTEiJ_T0095852.1 MGP_CASTEiJ_G0034545.1 mouse_genomes_project X 6713211 6786635 - MGP_CASTEiJ_P0095852 Bcor protein_coding protein_coding MGP_CASTEiJ_T0095853.1 MGP_CASTEiJ_G0034545.1 mouse_genomes_project X 6713301 6786585 - MGP_CASTEiJ_P0095853 Bcor protein_coding protein_coding MGP_CASTEiJ_T0097079.1 MGP_CASTEiJ_G0034897.1 mouse_genomes_project X 80114727 80123789 + MGP_CASTEiJ_P0097079 Yipf6 protein_coding protein_coding MGP_CASTEiJ_T0097080.1 MGP_CASTEiJ_G0034897.1 mouse_genomes_project X 80115914 80122293 + MGP_CASTEiJ_P0097080 Yipf6 protein_coding protein_coding MGP_CASTEiJ_T0097081.1 MGP_CASTEiJ_G0034897.1 mouse_genomes_project X 80115952 80118531 + MGP_CASTEiJ_P0097081 Yipf6 protein_coding protein_coding MGP_CASTEiJ_T0097082.1 MGP_CASTEiJ_G0034897.1 mouse_genomes_project X 80116410 80123564 + Yipf6 protein_coding retained_intron MGP_CASTEiJ_T0097083.1 MGP_CASTEiJ_G0034897.1 mouse_genomes_project X 80116410 80127658 + MGP_CASTEiJ_P0097083 Yipf6 protein_coding protein_coding MGP_CASTEiJ_T0097084.1 MGP_CASTEiJ_G0034897.1 mouse_genomes_project X 80116856 80122693 + Yipf6 protein_coding retained_intron MGP_CASTEiJ_T0100172.1 MGP_CASTEiJ_G0037085.1 mouse_genomes_project X 8684000 8684091 - Gm25552 snRNA snRNA MGP_CASTEiJ_T0095939.1 MGP_CASTEiJ_G0034573.1 mouse_genomes_project X 15060105 15084268 + MGP_CASTEiJ_P0095939 Uba1 protein_coding protein_coding MGP_CASTEiJ_T0095940.1 MGP_CASTEiJ_G0034573.1 mouse_genomes_project X 15060200 15071356 + Uba1 protein_coding processed_transcript MGP_CASTEiJ_T0095941.1 MGP_CASTEiJ_G0034573.1 mouse_genomes_project X 15061185 15070301 + Uba1 protein_coding processed_transcript MGP_CASTEiJ_T0095942.1 MGP_CASTEiJ_G0034573.1 mouse_genomes_project X 15063418 15084268 + MGP_CASTEiJ_P0095942 Uba1 protein_coding protein_coding MGP_CASTEiJ_T0095943.1 MGP_CASTEiJ_G0034573.1 mouse_genomes_project X 15079156 15082280 + Uba1 protein_coding processed_transcript MGP_CASTEiJ_T0095944.1 MGP_CASTEiJ_G0034573.1 mouse_genomes_project X 15081657 15083284 + Uba1 protein_coding processed_transcript MGP_CASTEiJ_T0096384.1 MGP_CASTEiJ_G0034722.1 mouse_genomes_project X 42117871 42224463 - MGP_CASTEiJ_P0096384 Gm7073 protein_coding protein_coding MGP_CASTEiJ_T0095997.1 MGP_CASTEiJ_G0034590.1 mouse_genomes_project X 17594377 17661641 - MGP_CASTEiJ_P0095997 Klhl13 protein_coding protein_coding MGP_CASTEiJ_T0095998.1 MGP_CASTEiJ_G0034590.1 mouse_genomes_project X 17594385 17662554 - MGP_CASTEiJ_P0095998 Klhl13 protein_coding protein_coding MGP_CASTEiJ_T0095999.1 MGP_CASTEiJ_G0034590.1 mouse_genomes_project X 17594386 17696689 - MGP_CASTEiJ_P0095999 Klhl13 protein_coding protein_coding MGP_CASTEiJ_T0096000.1 MGP_CASTEiJ_G0034590.1 mouse_genomes_project X 17594386 17642614 - MGP_CASTEiJ_P0096000 Klhl13 protein_coding protein_coding MGP_CASTEiJ_T0096001.1 MGP_CASTEiJ_G0034590.1 mouse_genomes_project X 17595270 17674949 - MGP_CASTEiJ_P0096001 Klhl13 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096002.1 MGP_CASTEiJ_G0034590.1 mouse_genomes_project X 17611292 17674918 - Klhl13 protein_coding processed_transcript MGP_CASTEiJ_T0015969.1 MGP_CASTEiJ_G0014132.1 mouse_genomes_project X 90345085 90345897 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100206.1 MGP_CASTEiJ_G0037119.1 mouse_genomes_project X 82451983 82452117 + Gm22472 snRNA snRNA MGP_CASTEiJ_T0009144.1 MGP_CASTEiJ_G0007359.1 mouse_genomes_project X 35989609 35991032 - Gm28730 lincRNA lincRNA MGP_CASTEiJ_T0009145.1 MGP_CASTEiJ_G0007359.1 mouse_genomes_project X 35989617 35991016 - Gm28730 lincRNA lincRNA MGP_CASTEiJ_T0009146.1 MGP_CASTEiJ_G0007359.1 mouse_genomes_project X 35989722 35991576 - Gm28730 lincRNA lincRNA MGP_CASTEiJ_T0015846.1 MGP_CASTEiJ_G0014009.1 mouse_genomes_project X 70487056 70488534 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015899.1 MGP_CASTEiJ_G0014062.1 mouse_genomes_project X 79285069 79286954 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097117.1 MGP_CASTEiJ_G0034908.1 mouse_genomes_project X 81784373 81789063 - MGP_CASTEiJ_P0097117 P2ry4 protein_coding protein_coding MGP_CASTEiJ_T0016113.1 MGP_CASTEiJ_G0014276.1 mouse_genomes_project X 120197648 120197904 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015983.1 MGP_CASTEiJ_G0014146.1 mouse_genomes_project X 93755025 93755933 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096961.1 MGP_CASTEiJ_G0034867.1 mouse_genomes_project X 74700057 75031594 - MGP_CASTEiJ_P0096961 Pola1 protein_coding protein_coding MGP_CASTEiJ_T0096962.1 MGP_CASTEiJ_G0034867.1 mouse_genomes_project X 74884048 74896416 - Pola1 protein_coding processed_transcript MGP_CASTEiJ_T0096963.1 MGP_CASTEiJ_G0034867.1 mouse_genomes_project X 75020767 75031554 - Pola1 protein_coding processed_transcript MGP_CASTEiJ_T0096964.1 MGP_CASTEiJ_G0034867.1 mouse_genomes_project X 75020767 75031582 - Pola1 protein_coding retained_intron MGP_CASTEiJ_T0097908.1 MGP_CASTEiJ_G0035142.1 mouse_genomes_project X 128586793 128698583 + MGP_CASTEiJ_P0097908 Wnk3 protein_coding protein_coding MGP_CASTEiJ_T0097909.1 MGP_CASTEiJ_G0035142.1 mouse_genomes_project X 128586793 128698583 + MGP_CASTEiJ_P0097909 Wnk3 protein_coding protein_coding MGP_CASTEiJ_T0097910.1 MGP_CASTEiJ_G0035142.1 mouse_genomes_project X 128586855 128698525 + MGP_CASTEiJ_P0097910 Wnk3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097911.1 MGP_CASTEiJ_G0035142.1 mouse_genomes_project X 128586855 128701702 + MGP_CASTEiJ_P0097911 Wnk3 protein_coding protein_coding MGP_CASTEiJ_T0097912.1 MGP_CASTEiJ_G0035142.1 mouse_genomes_project X 128596554 128614843 + Wnk3 protein_coding processed_transcript MGP_CASTEiJ_T0097913.1 MGP_CASTEiJ_G0035142.1 mouse_genomes_project X 128677361 128703546 + Wnk3 protein_coding processed_transcript MGP_CASTEiJ_T0097427.1 MGP_CASTEiJ_G0034994.1 mouse_genomes_project X 93317424 93322232 + MGP_CASTEiJ_P0097427 4933403O08Rik protein_coding protein_coding MGP_CASTEiJ_T0097428.1 MGP_CASTEiJ_G0034994.1 mouse_genomes_project X 93318853 93322232 + MGP_CASTEiJ_P0097428 4933403O08Rik protein_coding protein_coding MGP_CASTEiJ_T0097429.1 MGP_CASTEiJ_G0034994.1 mouse_genomes_project X 93318962 93322159 + MGP_CASTEiJ_P0097429 4933403O08Rik protein_coding protein_coding MGP_CASTEiJ_T0010880.1 MGP_CASTEiJ_G0009068.1 mouse_genomes_project X 86732809 86732897 - Mir384 miRNA miRNA MGP_CASTEiJ_T0010802.1 MGP_CASTEiJ_G0008990.1 mouse_genomes_project X 1771534 1771602 - Mir188 miRNA miRNA MGP_CASTEiJ_T0015754.1 MGP_CASTEiJ_G0013917.1 mouse_genomes_project X 48603072 48604509 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096092.1 MGP_CASTEiJ_G0034630.1 mouse_genomes_project X 21865736 21897023 - MGP_CASTEiJ_P0096092 Cul4b protein_coding protein_coding MGP_CASTEiJ_T0096093.1 MGP_CASTEiJ_G0034630.1 mouse_genomes_project X 21865736 21910256 - MGP_CASTEiJ_P0096093 Cul4b protein_coding protein_coding MGP_CASTEiJ_T0096094.1 MGP_CASTEiJ_G0034630.1 mouse_genomes_project X 21866032 21897160 - MGP_CASTEiJ_P0096094 Cul4b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096095.1 MGP_CASTEiJ_G0034630.1 mouse_genomes_project X 21866036 21910243 - MGP_CASTEiJ_P0096095 Cul4b protein_coding protein_coding MGP_CASTEiJ_T0096096.1 MGP_CASTEiJ_G0034630.1 mouse_genomes_project X 21884801 21920844 - MGP_CASTEiJ_P0096096 Cul4b protein_coding unknown_likely_coding MGP_CASTEiJ_T0010897.1 MGP_CASTEiJ_G0009085.1 mouse_genomes_project X 125266950 125267037 + Mir1912 miRNA miRNA MGP_CASTEiJ_T0101694.1 MGP_CASTEiJ_G0038517.1 mouse_genomes_project X 88935282 88936501 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101695.1 MGP_CASTEiJ_G0038517.1 mouse_genomes_project X 88935291 88936446 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0096137.1 MGP_CASTEiJ_G0034639.1 mouse_genomes_project X 25368756 25501527 + MGP_CASTEiJ_P0096137 Stag2 protein_coding protein_coding MGP_CASTEiJ_T0096138.1 MGP_CASTEiJ_G0034639.1 mouse_genomes_project X 25368884 25436117 + Stag2 protein_coding retained_intron MGP_CASTEiJ_T0096139.1 MGP_CASTEiJ_G0034639.1 mouse_genomes_project X 25369026 25429169 + MGP_CASTEiJ_P0096139 Stag2 protein_coding protein_coding MGP_CASTEiJ_T0096140.1 MGP_CASTEiJ_G0034639.1 mouse_genomes_project X 25369501 25434856 + Stag2 protein_coding processed_transcript MGP_CASTEiJ_T0096141.1 MGP_CASTEiJ_G0034639.1 mouse_genomes_project X 25369533 25499638 + MGP_CASTEiJ_P0096141 Stag2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096142.1 MGP_CASTEiJ_G0034639.1 mouse_genomes_project X 25370749 25501537 + MGP_CASTEiJ_P0096142 Stag2 protein_coding protein_coding MGP_CASTEiJ_T0096143.1 MGP_CASTEiJ_G0034639.1 mouse_genomes_project X 25371062 25429172 + MGP_CASTEiJ_P0096143 Stag2 protein_coding protein_coding MGP_CASTEiJ_T0096144.1 MGP_CASTEiJ_G0034639.1 mouse_genomes_project X 25372228 25444463 + MGP_CASTEiJ_P0096144 Stag2 protein_coding protein_coding MGP_CASTEiJ_T0096570.1 MGP_CASTEiJ_G0034784.1 mouse_genomes_project X 55388215 55425076 - MGP_CASTEiJ_P0096570 Pdzd4 protein_coding protein_coding MGP_CASTEiJ_T0096571.1 MGP_CASTEiJ_G0034784.1 mouse_genomes_project X 55388215 55425076 - MGP_CASTEiJ_P0096571 Pdzd4 protein_coding protein_coding MGP_CASTEiJ_T0015741.1 MGP_CASTEiJ_G0013904.1 mouse_genomes_project X 44526036 44526300 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097786.1 MGP_CASTEiJ_G0035120.1 mouse_genomes_project X 121436003 121440681 + MGP_CASTEiJ_P0097786 Rgag1 protein_coding protein_coding MGP_CASTEiJ_T0015867.1 MGP_CASTEiJ_G0014030.1 mouse_genomes_project X 74937765 74939978 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015792.1 MGP_CASTEiJ_G0013955.1 mouse_genomes_project X 57985550 57986322 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101687.1 MGP_CASTEiJ_G0038512.1 mouse_genomes_project X 17748040 17748598 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0097065.1 MGP_CASTEiJ_G0034894.1 mouse_genomes_project X 78595193 78633691 - MGP_CASTEiJ_P0097065 Eda2r protein_coding unknown_likely_coding MGP_CASTEiJ_T0097066.1 MGP_CASTEiJ_G0034894.1 mouse_genomes_project X 78599152 78653117 - Eda2r protein_coding retained_intron MGP_CASTEiJ_T0097067.1 MGP_CASTEiJ_G0034894.1 mouse_genomes_project X 78612146 78653073 - Eda2r protein_coding retained_intron MGP_CASTEiJ_T0010875.1 MGP_CASTEiJ_G0009063.1 mouse_genomes_project X 84963636 84963712 - Mir421 miRNA miRNA MGP_CASTEiJ_T0095795.1 MGP_CASTEiJ_G0034528.1 mouse_genomes_project X 2832668 2847117 - MGP_CASTEiJ_P0095795 Ftsj1 protein_coding protein_coding MGP_CASTEiJ_T0095796.1 MGP_CASTEiJ_G0034528.1 mouse_genomes_project X 2834444 2847106 - MGP_CASTEiJ_P0095796 Ftsj1 protein_coding protein_coding MGP_CASTEiJ_T0095797.1 MGP_CASTEiJ_G0034528.1 mouse_genomes_project X 2834444 2847021 - MGP_CASTEiJ_P0095797 Ftsj1 protein_coding protein_coding MGP_CASTEiJ_T0095798.1 MGP_CASTEiJ_G0034528.1 mouse_genomes_project X 2839341 2846919 - Ftsj1 protein_coding retained_intron MGP_CASTEiJ_T0095799.1 MGP_CASTEiJ_G0034528.1 mouse_genomes_project X 2839638 2841077 - MGP_CASTEiJ_P0095799 Ftsj1 protein_coding protein_coding MGP_CASTEiJ_T0095800.1 MGP_CASTEiJ_G0034528.1 mouse_genomes_project X 2839669 2840529 - Ftsj1 protein_coding processed_transcript MGP_CASTEiJ_T0095801.1 MGP_CASTEiJ_G0034528.1 mouse_genomes_project X 2843239 2847074 - Ftsj1 protein_coding retained_intron MGP_CASTEiJ_T0101691.1 MGP_CASTEiJ_G0038515.1 mouse_genomes_project X 54388034 54388771 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101692.1 MGP_CASTEiJ_G0038515.1 mouse_genomes_project X 54388034 54388938 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0096504.1 MGP_CASTEiJ_G0034769.1 mouse_genomes_project X 54906971 54923439 + MGP_CASTEiJ_P0096504 Zfp275 protein_coding protein_coding MGP_CASTEiJ_T0096505.1 MGP_CASTEiJ_G0034769.1 mouse_genomes_project X 54906971 54923439 + MGP_CASTEiJ_P0096505 Zfp275 protein_coding protein_coding MGP_CASTEiJ_T0096506.1 MGP_CASTEiJ_G0034769.1 mouse_genomes_project X 54908818 54916194 + Zfp275 protein_coding retained_intron MGP_CASTEiJ_T0015858.1 MGP_CASTEiJ_G0014021.1 mouse_genomes_project X 72857140 72858175 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095870.1 MGP_CASTEiJ_G0034550.1 mouse_genomes_project X 7975142 7989102 + MGP_CASTEiJ_P0095870 Ddx3x protein_coding protein_coding MGP_CASTEiJ_T0095871.1 MGP_CASTEiJ_G0034550.1 mouse_genomes_project X 7975194 7988501 + Ddx3x protein_coding processed_transcript MGP_CASTEiJ_T0095872.1 MGP_CASTEiJ_G0034550.1 mouse_genomes_project X 7975204 7984362 + Ddx3x protein_coding retained_intron MGP_CASTEiJ_T0095873.1 MGP_CASTEiJ_G0034550.1 mouse_genomes_project X 7983773 7985342 + Ddx3x protein_coding retained_intron MGP_CASTEiJ_T0095874.1 MGP_CASTEiJ_G0034550.1 mouse_genomes_project X 7984274 7986405 + Ddx3x protein_coding retained_intron MGP_CASTEiJ_T0098152.1 MGP_CASTEiJ_G0035198.1 mouse_genomes_project X 140129737 140148553 + MGP_CASTEiJ_P0098152 Rbbp7 protein_coding protein_coding MGP_CASTEiJ_T0098153.1 MGP_CASTEiJ_G0035198.1 mouse_genomes_project X 140129756 140148217 + MGP_CASTEiJ_P0098153 Rbbp7 protein_coding protein_coding MGP_CASTEiJ_T0098154.1 MGP_CASTEiJ_G0035198.1 mouse_genomes_project X 140129797 140145254 + MGP_CASTEiJ_P0098154 Rbbp7 protein_coding protein_coding MGP_CASTEiJ_T0098155.1 MGP_CASTEiJ_G0035198.1 mouse_genomes_project X 140130402 140141597 + MGP_CASTEiJ_P0098155 Rbbp7 protein_coding protein_coding MGP_CASTEiJ_T0098156.1 MGP_CASTEiJ_G0035198.1 mouse_genomes_project X 140143939 140147588 + MGP_CASTEiJ_P0098156 Rbbp7 protein_coding protein_coding MGP_CASTEiJ_T0100242.1 MGP_CASTEiJ_G0037155.1 mouse_genomes_project X 145955457 145955569 - Gm23197 snRNA snRNA MGP_CASTEiJ_T0097588.1 MGP_CASTEiJ_G0035047.1 mouse_genomes_project X 113488309 113494047 + MGP_CASTEiJ_P0097588 protein_coding protein_coding MGP_CASTEiJ_T0015839.1 MGP_CASTEiJ_G0014002.1 mouse_genomes_project X 70001063 70001534 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015582.1 MGP_CASTEiJ_G0013745.1 mouse_genomes_project X 7609744 7610427 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016019.1 MGP_CASTEiJ_G0014182.1 mouse_genomes_project X 99615922 99617031 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015573.1 MGP_CASTEiJ_G0013736.1 mouse_genomes_project X 6304665 6304788 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098688.1 MGP_CASTEiJ_G0035619.1 mouse_genomes_project X 12891231 12891354 - n-R5s5 rRNA rRNA MGP_CASTEiJ_T0096914.1 MGP_CASTEiJ_G0034850.1 mouse_genomes_project X 64182726 64815861 + protein_coding retained_intron MGP_CASTEiJ_T0096915.1 MGP_CASTEiJ_G0034850.1 mouse_genomes_project X 64182759 66562964 + MGP_CASTEiJ_P0096915 protein_coding protein_coding MGP_CASTEiJ_T0096916.1 MGP_CASTEiJ_G0034850.1 mouse_genomes_project X 64282314 65066140 + protein_coding retained_intron MGP_CASTEiJ_T0096918.1 MGP_CASTEiJ_G0034850.1 mouse_genomes_project X 65200999 65233309 + protein_coding processed_transcript MGP_CASTEiJ_T0096919.1 MGP_CASTEiJ_G0034850.1 mouse_genomes_project X 65267839 65268841 + protein_coding processed_transcript MGP_CASTEiJ_T0096920.1 MGP_CASTEiJ_G0034850.1 mouse_genomes_project X 65426413 65671861 + protein_coding processed_transcript MGP_CASTEiJ_T0096921.1 MGP_CASTEiJ_G0034850.1 mouse_genomes_project X 65935298 66498696 + protein_coding retained_intron MGP_CASTEiJ_T0096922.1 MGP_CASTEiJ_G0034850.1 mouse_genomes_project X 66115336 66319432 + protein_coding retained_intron MGP_CASTEiJ_T0096923.1 MGP_CASTEiJ_G0034850.1 mouse_genomes_project X 66402433 66409729 + protein_coding retained_intron MGP_CASTEiJ_T0096924.1 MGP_CASTEiJ_G0034850.1 mouse_genomes_project X 66402457 66494459 + protein_coding retained_intron MGP_CASTEiJ_T0096925.1 MGP_CASTEiJ_G0034850.1 mouse_genomes_project X 66402460 66498694 + protein_coding retained_intron MGP_CASTEiJ_T0096926.1 MGP_CASTEiJ_G0034850.1 mouse_genomes_project X 66402551 66559542 + MGP_CASTEiJ_P0096926 protein_coding protein_coding MGP_CASTEiJ_T0096927.1 MGP_CASTEiJ_G0034850.1 mouse_genomes_project X 66402551 66562072 + MGP_CASTEiJ_P0096927 protein_coding protein_coding MGP_CASTEiJ_T0096928.1 MGP_CASTEiJ_G0034850.1 mouse_genomes_project X 66533980 66559881 + protein_coding processed_transcript MGP_CASTEiJ_T0017870.1 MGP_CASTEiJ_G0015092.1 mouse_genomes_project X 35993460 35995632 - C430049B03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017871.1 MGP_CASTEiJ_G0015092.1 mouse_genomes_project X 35993621 35995602 - C430049B03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017872.1 MGP_CASTEiJ_G0015092.1 mouse_genomes_project X 35994184 35995630 - C430049B03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017873.1 MGP_CASTEiJ_G0015092.1 mouse_genomes_project X 35994603 35995632 - C430049B03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0102654.1 MGP_CASTEiJ_G0039378.1 mouse_genomes_project X 130487033 130487723 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010806.1 MGP_CASTEiJ_G0008994.1 mouse_genomes_project X 10318388 10318452 + Gm22464 miRNA miRNA MGP_CASTEiJ_T0095931.1 MGP_CASTEiJ_G0034572.1 mouse_genomes_project X 15016052 15050688 + MGP_CASTEiJ_P0095931 Rbm10 protein_coding protein_coding MGP_CASTEiJ_T0095932.1 MGP_CASTEiJ_G0034572.1 mouse_genomes_project X 15016171 15050701 + MGP_CASTEiJ_P0095932 Rbm10 protein_coding protein_coding MGP_CASTEiJ_T0095933.1 MGP_CASTEiJ_G0034572.1 mouse_genomes_project X 15016332 15050701 + MGP_CASTEiJ_P0095933 Rbm10 protein_coding protein_coding MGP_CASTEiJ_T0095934.1 MGP_CASTEiJ_G0034572.1 mouse_genomes_project X 15016334 15048201 + Rbm10 protein_coding processed_transcript MGP_CASTEiJ_T0095935.1 MGP_CASTEiJ_G0034572.1 mouse_genomes_project X 15016710 15050695 + MGP_CASTEiJ_P0095935 Rbm10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095936.1 MGP_CASTEiJ_G0034572.1 mouse_genomes_project X 15018646 15050484 + MGP_CASTEiJ_P0095936 Rbm10 protein_coding protein_coding MGP_CASTEiJ_T0095937.1 MGP_CASTEiJ_G0034572.1 mouse_genomes_project X 15018646 15050484 + MGP_CASTEiJ_P0095937 Rbm10 protein_coding protein_coding MGP_CASTEiJ_T0095938.1 MGP_CASTEiJ_G0034572.1 mouse_genomes_project X 15018646 15050484 + MGP_CASTEiJ_P0095938 Rbm10 protein_coding protein_coding MGP_CASTEiJ_T0015810.1 MGP_CASTEiJ_G0013973.1 mouse_genomes_project X 61504555 61505245 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011431.1 MGP_CASTEiJ_G0009619.1 mouse_genomes_project X 81947824 81948152 + Gm22160 misc_RNA misc_RNA MGP_CASTEiJ_T0098727.1 MGP_CASTEiJ_G0035658.1 mouse_genomes_project X 130259176 130259417 + Gm24687 ribozyme ribozyme MGP_CASTEiJ_T0015853.1 MGP_CASTEiJ_G0014016.1 mouse_genomes_project X 71769310 71771716 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097146.1 MGP_CASTEiJ_G0034914.1 mouse_genomes_project X 82038457 82256569 - MGP_CASTEiJ_P0097146 protein_coding protein_coding MGP_CASTEiJ_T0097147.1 MGP_CASTEiJ_G0034914.1 mouse_genomes_project X 82038457 82256541 - MGP_CASTEiJ_P0097147 protein_coding protein_coding MGP_CASTEiJ_T0097148.1 MGP_CASTEiJ_G0034914.1 mouse_genomes_project X 82072800 82256569 - MGP_CASTEiJ_P0097148 protein_coding protein_coding MGP_CASTEiJ_T0015585.1 MGP_CASTEiJ_G0013748.1 mouse_genomes_project X 7930606 7931830 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098258.1 MGP_CASTEiJ_G0035225.1 mouse_genomes_project X 143834361 143846869 - MGP_CASTEiJ_P0098258 Tceanc protein_coding protein_coding MGP_CASTEiJ_T0098259.1 MGP_CASTEiJ_G0035225.1 mouse_genomes_project X 143836920 143838000 - MGP_CASTEiJ_P0098259 Tceanc protein_coding protein_coding MGP_CASTEiJ_T0098260.1 MGP_CASTEiJ_G0035225.1 mouse_genomes_project X 143837894 143854969 - MGP_CASTEiJ_P0098260 Tceanc protein_coding protein_coding MGP_CASTEiJ_T0010886.1 MGP_CASTEiJ_G0009074.1 mouse_genomes_project X 112180589 112180671 + Mir3112 miRNA miRNA MGP_CASTEiJ_T0005459.1 MGP_CASTEiJ_G0004611.1 mouse_genomes_project X 120061497 120062823 + Gm15295 antisense antisense MGP_CASTEiJ_T0095639.1 MGP_CASTEiJ_G0034497.1 mouse_genomes_project X 2185318 2200904 + MGP_CASTEiJ_P0095639 Syp protein_coding protein_coding MGP_CASTEiJ_T0095640.1 MGP_CASTEiJ_G0034497.1 mouse_genomes_project X 2185485 2195085 + Syp protein_coding retained_intron MGP_CASTEiJ_T0095641.1 MGP_CASTEiJ_G0034497.1 mouse_genomes_project X 2185569 2191997 + MGP_CASTEiJ_P0095641 Syp protein_coding protein_coding MGP_CASTEiJ_T0095642.1 MGP_CASTEiJ_G0034497.1 mouse_genomes_project X 2186152 2191986 + Syp protein_coding processed_transcript MGP_CASTEiJ_T0095643.1 MGP_CASTEiJ_G0034497.1 mouse_genomes_project X 2186608 2191945 + Syp protein_coding retained_intron MGP_CASTEiJ_T0095644.1 MGP_CASTEiJ_G0034497.1 mouse_genomes_project X 2191611 2192736 + Syp protein_coding retained_intron MGP_CASTEiJ_T0016215.1 MGP_CASTEiJ_G0014378.1 mouse_genomes_project X 140269206 140269606 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016094.1 MGP_CASTEiJ_G0014257.1 mouse_genomes_project X 117516520 117518812 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016035.1 MGP_CASTEiJ_G0014198.1 mouse_genomes_project X 103591971 103592700 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016011.1 MGP_CASTEiJ_G0014174.1 mouse_genomes_project X 98590838 98591827 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101843.1 MGP_CASTEiJ_G0038593.1 mouse_genomes_project X 128197284 128228599 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0101844.1 MGP_CASTEiJ_G0038593.1 mouse_genomes_project X 128221609 128223833 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101845.1 MGP_CASTEiJ_G0038593.1 mouse_genomes_project X 128225225 128228712 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0015800.1 MGP_CASTEiJ_G0013963.1 mouse_genomes_project X 59296794 59297743 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016052.1 MGP_CASTEiJ_G0014215.1 mouse_genomes_project X 109725222 109727070 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097599.1 MGP_CASTEiJ_G0035052.1 mouse_genomes_project X 113893534 113938616 - MGP_CASTEiJ_P0097599 Tcp11x2 protein_coding protein_coding MGP_CASTEiJ_T0096478.1 MGP_CASTEiJ_G0034755.1 mouse_genomes_project X 53574645 53597018 + MGP_CASTEiJ_P0096478 Cnga2 protein_coding protein_coding MGP_CASTEiJ_T0096479.1 MGP_CASTEiJ_G0034755.1 mouse_genomes_project X 53574651 53588355 + Cnga2 protein_coding processed_transcript MGP_CASTEiJ_T0015604.1 MGP_CASTEiJ_G0013767.1 mouse_genomes_project X 12201834 12203689 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010837.1 MGP_CASTEiJ_G0009025.1 mouse_genomes_project X 48403453 48403515 - Mir743 miRNA miRNA MGP_CASTEiJ_T0097110.1 MGP_CASTEiJ_G0034903.1 mouse_genomes_project X 81595139 81605189 - MGP_CASTEiJ_P0097110 Awat2 protein_coding protein_coding MGP_CASTEiJ_T0096394.1 MGP_CASTEiJ_G0034730.1 mouse_genomes_project X 45948818 45959239 - MGP_CASTEiJ_P0096394 Slitrk4 protein_coding protein_coding MGP_CASTEiJ_T0096395.1 MGP_CASTEiJ_G0034730.1 mouse_genomes_project X 45952016 45959222 - MGP_CASTEiJ_P0096395 Slitrk4 protein_coding protein_coding MGP_CASTEiJ_T0096396.1 MGP_CASTEiJ_G0034730.1 mouse_genomes_project X 45954967 45958065 - MGP_CASTEiJ_P0096396 Slitrk4 protein_coding protein_coding MGP_CASTEiJ_T0015807.1 MGP_CASTEiJ_G0013970.1 mouse_genomes_project X 60533217 60533439 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015570.1 MGP_CASTEiJ_G0013733.1 mouse_genomes_project X 5614098 5614585 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096016.1 MGP_CASTEiJ_G0034595.1 mouse_genomes_project X 19485667 19546407 + MGP_CASTEiJ_P0096016 Il13ra1 protein_coding protein_coding MGP_CASTEiJ_T0015557.1 MGP_CASTEiJ_G0013720.1 mouse_genomes_project X 2057758 2058172 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016044.1 MGP_CASTEiJ_G0014207.1 mouse_genomes_project X 107647887 107648673 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017904.1 MGP_CASTEiJ_G0015102.1 mouse_genomes_project X 90183146 90235263 + processed_transcript processed_transcript MGP_CASTEiJ_T0017905.1 MGP_CASTEiJ_G0015102.1 mouse_genomes_project X 90183170 90235057 + processed_transcript processed_transcript MGP_CASTEiJ_T0017906.1 MGP_CASTEiJ_G0015102.1 mouse_genomes_project X 90183246 90317336 + processed_transcript processed_transcript MGP_CASTEiJ_T0017907.1 MGP_CASTEiJ_G0015102.1 mouse_genomes_project X 90183325 90235050 + processed_transcript processed_transcript MGP_CASTEiJ_T0017908.1 MGP_CASTEiJ_G0015102.1 mouse_genomes_project X 90183332 90188193 + processed_transcript retained_intron MGP_CASTEiJ_T0017909.1 MGP_CASTEiJ_G0015102.1 mouse_genomes_project X 90183347 90223193 + processed_transcript processed_transcript MGP_CASTEiJ_T0017910.1 MGP_CASTEiJ_G0015102.1 mouse_genomes_project X 90183363 90223397 + processed_transcript processed_transcript MGP_CASTEiJ_T0017911.1 MGP_CASTEiJ_G0015102.1 mouse_genomes_project X 90250209 90317651 + processed_transcript processed_transcript MGP_CASTEiJ_T0097840.1 MGP_CASTEiJ_G0035131.1 mouse_genomes_project X 125639414 125673470 - MGP_CASTEiJ_P0097840 Il13ra2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095627.1 MGP_CASTEiJ_G0034496.1 mouse_genomes_project X 2154035 2182046 + MGP_CASTEiJ_P0095627 Cacna1f protein_coding unknown_likely_coding MGP_CASTEiJ_T0095628.1 MGP_CASTEiJ_G0034496.1 mouse_genomes_project X 2154116 2182068 + MGP_CASTEiJ_P0095628 Cacna1f protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095629.1 MGP_CASTEiJ_G0034496.1 mouse_genomes_project X 2154131 2165172 + Cacna1f protein_coding retained_intron MGP_CASTEiJ_T0095630.1 MGP_CASTEiJ_G0034496.1 mouse_genomes_project X 2154132 2182071 + MGP_CASTEiJ_P0095630 Cacna1f protein_coding protein_coding MGP_CASTEiJ_T0095631.1 MGP_CASTEiJ_G0034496.1 mouse_genomes_project X 2154153 2166196 + MGP_CASTEiJ_P0095631 Cacna1f protein_coding protein_coding MGP_CASTEiJ_T0095632.1 MGP_CASTEiJ_G0034496.1 mouse_genomes_project X 2154162 2182071 + MGP_CASTEiJ_P0095632 Cacna1f protein_coding protein_coding MGP_CASTEiJ_T0095633.1 MGP_CASTEiJ_G0034496.1 mouse_genomes_project X 2154177 2182069 + Cacna1f protein_coding retained_intron MGP_CASTEiJ_T0095634.1 MGP_CASTEiJ_G0034496.1 mouse_genomes_project X 2173122 2174833 + Cacna1f protein_coding retained_intron MGP_CASTEiJ_T0095635.1 MGP_CASTEiJ_G0034496.1 mouse_genomes_project X 2174086 2177123 + MGP_CASTEiJ_P0095635 Cacna1f protein_coding protein_coding MGP_CASTEiJ_T0095636.1 MGP_CASTEiJ_G0034496.1 mouse_genomes_project X 2174086 2177376 + MGP_CASTEiJ_P0095636 Cacna1f protein_coding protein_coding MGP_CASTEiJ_T0095637.1 MGP_CASTEiJ_G0034496.1 mouse_genomes_project X 2175080 2176639 + Cacna1f protein_coding retained_intron MGP_CASTEiJ_T0095638.1 MGP_CASTEiJ_G0034496.1 mouse_genomes_project X 2178153 2179865 + Cacna1f protein_coding retained_intron MGP_CASTEiJ_T0015829.1 MGP_CASTEiJ_G0013992.1 mouse_genomes_project X 67139488 67139917 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010809.1 MGP_CASTEiJ_G0008997.1 mouse_genomes_project X 15232802 15232880 - Gm24824 miRNA miRNA MGP_CASTEiJ_T0010810.1 MGP_CASTEiJ_G0008998.1 mouse_genomes_project X 15274636 15274693 - Mir5617 miRNA miRNA MGP_CASTEiJ_T0009159.1 MGP_CASTEiJ_G0007369.1 mouse_genomes_project X 72508190 72508814 + Gm14773 lincRNA lincRNA MGP_CASTEiJ_T0101470.1 MGP_CASTEiJ_G0038383.1 mouse_genomes_project X 132517768 132517900 + Gm25429 snoRNA snoRNA MGP_CASTEiJ_T0002410.1 MGP_CASTEiJ_G0002327.1 mouse_genomes_project X 143163599 143164453 - TEC TEC MGP_CASTEiJ_T0100196.1 MGP_CASTEiJ_G0037109.1 mouse_genomes_project X 46489301 46489407 + Gm26111 snRNA snRNA MGP_CASTEiJ_T0096954.1 MGP_CASTEiJ_G0034864.1 mouse_genomes_project X 73035022 73060792 + MGP_CASTEiJ_P0096954 Mageb5 protein_coding protein_coding MGP_CASTEiJ_T0097679.1 MGP_CASTEiJ_G0035083.1 mouse_genomes_project X 115808727 117120618 + MGP_CASTEiJ_P0097679 Il1rapl2 protein_coding protein_coding MGP_CASTEiJ_T0097680.1 MGP_CASTEiJ_G0035083.1 mouse_genomes_project X 115809138 116765582 + Il1rapl2 protein_coding retained_intron MGP_CASTEiJ_T0097681.1 MGP_CASTEiJ_G0035083.1 mouse_genomes_project X 115897208 117120296 + MGP_CASTEiJ_P0097681 Il1rapl2 protein_coding protein_coding MGP_CASTEiJ_T0015771.1 MGP_CASTEiJ_G0013934.1 mouse_genomes_project X 52164312 52164857 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009127.1 MGP_CASTEiJ_G0007347.1 mouse_genomes_project X 7004364 7020196 - Gm14635 lincRNA lincRNA MGP_CASTEiJ_T0009128.1 MGP_CASTEiJ_G0007347.1 mouse_genomes_project X 7005224 7009779 - Gm14635 lincRNA lincRNA MGP_CASTEiJ_T0095836.1 MGP_CASTEiJ_G0034542.1 mouse_genomes_project X 4826734 4900463 + MGP_CASTEiJ_P0095836 Otc protein_coding protein_coding MGP_CASTEiJ_T0095837.1 MGP_CASTEiJ_G0034542.1 mouse_genomes_project X 4826796 4896626 + MGP_CASTEiJ_P0095837 Otc protein_coding protein_coding MGP_CASTEiJ_T0096056.1 MGP_CASTEiJ_G0034611.1 mouse_genomes_project X 20570068 20588267 - MGP_CASTEiJ_P0096056 Akap14 protein_coding protein_coding MGP_CASTEiJ_T0015951.1 MGP_CASTEiJ_G0014114.1 mouse_genomes_project X 86951519 86951757 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010807.1 MGP_CASTEiJ_G0008995.1 mouse_genomes_project X 13636817 13636912 - Mir221 miRNA miRNA MGP_CASTEiJ_T0015753.1 MGP_CASTEiJ_G0013916.1 mouse_genomes_project X 48386864 48388057 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095892.1 MGP_CASTEiJ_G0034555.1 mouse_genomes_project X 9608657 9609320 + MGP_CASTEiJ_P0095892 protein_coding protein_coding MGP_CASTEiJ_T0015930.1 MGP_CASTEiJ_G0014093.1 mouse_genomes_project X 84650365 84652169 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015861.1 MGP_CASTEiJ_G0014024.1 mouse_genomes_project X 72966154 72966345 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015901.1 MGP_CASTEiJ_G0014064.1 mouse_genomes_project X 79713963 79714449 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095820.1 MGP_CASTEiJ_G0034537.1 mouse_genomes_project X 4409435 4410016 + MGP_CASTEiJ_P0095820 Hypm protein_coding protein_coding MGP_CASTEiJ_T0005435.1 MGP_CASTEiJ_G0004590.1 mouse_genomes_project X 35197970 35235897 + Gm14582 antisense antisense MGP_CASTEiJ_T0016206.1 MGP_CASTEiJ_G0014369.1 mouse_genomes_project X 138053635 138053918 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015677.1 MGP_CASTEiJ_G0013840.1 mouse_genomes_project X 30492719 30493724 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017866.1 MGP_CASTEiJ_G0015091.1 mouse_genomes_project X 35658934 35660963 - Kis2 processed_transcript processed_transcript MGP_CASTEiJ_T0017867.1 MGP_CASTEiJ_G0015091.1 mouse_genomes_project X 35658934 35660963 - Kis2 processed_transcript processed_transcript MGP_CASTEiJ_T0017868.1 MGP_CASTEiJ_G0015091.1 mouse_genomes_project X 35658934 35660963 - Kis2 processed_transcript processed_transcript MGP_CASTEiJ_T0017869.1 MGP_CASTEiJ_G0015091.1 mouse_genomes_project X 35658936 35661331 - Kis2 processed_transcript processed_transcript MGP_CASTEiJ_T0010900.1 MGP_CASTEiJ_G0009088.1 mouse_genomes_project X 125374409 125374547 + Gm24627 miRNA miRNA MGP_CASTEiJ_T0097782.1 MGP_CASTEiJ_G0035118.1 mouse_genomes_project X 121021309 121174615 + MGP_CASTEiJ_P0097782 Tmem164 protein_coding protein_coding MGP_CASTEiJ_T0097783.1 MGP_CASTEiJ_G0035118.1 mouse_genomes_project X 121022764 121108266 + Tmem164 protein_coding retained_intron MGP_CASTEiJ_T0097784.1 MGP_CASTEiJ_G0035118.1 mouse_genomes_project X 121107968 121179558 + MGP_CASTEiJ_P0097784 Tmem164 protein_coding protein_coding MGP_CASTEiJ_T0015568.1 MGP_CASTEiJ_G0013731.1 mouse_genomes_project X 3576477 3577137 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096341.1 MGP_CASTEiJ_G0034710.1 mouse_genomes_project X 38832986 38851962 + MGP_CASTEiJ_P0096341 Vgll1 protein_coding protein_coding MGP_CASTEiJ_T0096342.1 MGP_CASTEiJ_G0034710.1 mouse_genomes_project X 38834195 38850953 + MGP_CASTEiJ_P0096342 Vgll1 protein_coding protein_coding MGP_CASTEiJ_T0096343.1 MGP_CASTEiJ_G0034710.1 mouse_genomes_project X 38834257 38851962 + MGP_CASTEiJ_P0096343 Vgll1 protein_coding protein_coding MGP_CASTEiJ_T0096344.1 MGP_CASTEiJ_G0034710.1 mouse_genomes_project X 38844862 38847361 + MGP_CASTEiJ_P0096344 Vgll1 protein_coding protein_coding MGP_CASTEiJ_T0015929.1 MGP_CASTEiJ_G0014092.1 mouse_genomes_project X 84594156 84594675 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016096.1 MGP_CASTEiJ_G0014259.1 mouse_genomes_project X 117686138 117686806 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002403.1 MGP_CASTEiJ_G0002320.1 mouse_genomes_project X 54984881 54986137 + TEC TEC MGP_CASTEiJ_T0100178.1 MGP_CASTEiJ_G0037091.1 mouse_genomes_project X 15202941 15203048 - Gm26065 snRNA snRNA MGP_CASTEiJ_T0015589.1 MGP_CASTEiJ_G0013752.1 mouse_genomes_project X 8197191 8197727 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015852.1 MGP_CASTEiJ_G0014015.1 mouse_genomes_project X 71429581 71431200 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015667.1 MGP_CASTEiJ_G0013830.1 mouse_genomes_project X 27474509 27474869 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015563.1 MGP_CASTEiJ_G0013726.1 mouse_genomes_project X 2518972 2519688 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101448.1 MGP_CASTEiJ_G0038361.1 mouse_genomes_project X 85472421 85472559 - Gm22266 snoRNA snoRNA MGP_CASTEiJ_T0009205.1 MGP_CASTEiJ_G0007395.1 mouse_genomes_project X 139178975 139190475 - Gm15205 lincRNA lincRNA MGP_CASTEiJ_T0005452.1 MGP_CASTEiJ_G0004605.1 mouse_genomes_project X 76844686 76942748 + antisense antisense MGP_CASTEiJ_T0016166.1 MGP_CASTEiJ_G0014329.1 mouse_genomes_project X 130892911 130893296 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096811.1 MGP_CASTEiJ_G0034815.1 mouse_genomes_project X 56609344 56611222 + MGP_CASTEiJ_P0096811 protein_coding protein_coding MGP_CASTEiJ_T0097068.1 MGP_CASTEiJ_G0034895.1 mouse_genomes_project X 79328710 79503668 + MGP_CASTEiJ_P0097068 Ar protein_coding protein_coding MGP_CASTEiJ_T0097493.1 MGP_CASTEiJ_G0035020.1 mouse_genomes_project X 111963420 111978280 + MGP_CASTEiJ_P0097493 Tnmd protein_coding protein_coding MGP_CASTEiJ_T0096513.1 MGP_CASTEiJ_G0034773.1 mouse_genomes_project X 55060655 55071249 + Bgn protein_coding processed_transcript MGP_CASTEiJ_T0096514.1 MGP_CASTEiJ_G0034773.1 mouse_genomes_project X 55060655 55074839 + MGP_CASTEiJ_P0096514 Bgn protein_coding protein_coding MGP_CASTEiJ_T0096515.1 MGP_CASTEiJ_G0034773.1 mouse_genomes_project X 55060676 55070901 + Bgn protein_coding retained_intron MGP_CASTEiJ_T0096516.1 MGP_CASTEiJ_G0034773.1 mouse_genomes_project X 55060686 55063332 + Bgn protein_coding retained_intron MGP_CASTEiJ_T0096517.1 MGP_CASTEiJ_G0034773.1 mouse_genomes_project X 55060688 55074835 + MGP_CASTEiJ_P0096517 Bgn protein_coding protein_coding MGP_CASTEiJ_T0096518.1 MGP_CASTEiJ_G0034773.1 mouse_genomes_project X 55060692 55070888 + Bgn protein_coding retained_intron MGP_CASTEiJ_T0096519.1 MGP_CASTEiJ_G0034773.1 mouse_genomes_project X 55070562 55071813 + Bgn protein_coding processed_transcript MGP_CASTEiJ_T0096520.1 MGP_CASTEiJ_G0034773.1 mouse_genomes_project X 55073799 55074832 + Bgn protein_coding processed_transcript MGP_CASTEiJ_T0015894.1 MGP_CASTEiJ_G0014057.1 mouse_genomes_project X 78222736 78223271 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015695.1 MGP_CASTEiJ_G0013858.1 mouse_genomes_project X 34735468 34736001 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015681.1 MGP_CASTEiJ_G0013844.1 mouse_genomes_project X 31913048 31913345 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102630.1 MGP_CASTEiJ_G0039354.1 mouse_genomes_project X 56536837 56536975 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0096448.1 MGP_CASTEiJ_G0034747.1 mouse_genomes_project X 52914099 52940033 + MGP_CASTEiJ_P0096448 Mtmr1 protein_coding protein_coding MGP_CASTEiJ_T0096449.1 MGP_CASTEiJ_G0034747.1 mouse_genomes_project X 52914099 52975497 + MGP_CASTEiJ_P0096449 Mtmr1 protein_coding protein_coding MGP_CASTEiJ_T0096450.1 MGP_CASTEiJ_G0034747.1 mouse_genomes_project X 52914276 52949576 + MGP_CASTEiJ_P0096450 Mtmr1 protein_coding protein_coding MGP_CASTEiJ_T0096451.1 MGP_CASTEiJ_G0034747.1 mouse_genomes_project X 52920387 52940011 + MGP_CASTEiJ_P0096451 Mtmr1 protein_coding protein_coding MGP_CASTEiJ_T0096452.1 MGP_CASTEiJ_G0034747.1 mouse_genomes_project X 52920387 52940011 + MGP_CASTEiJ_P0096452 Mtmr1 protein_coding protein_coding MGP_CASTEiJ_T0096453.1 MGP_CASTEiJ_G0034747.1 mouse_genomes_project X 52920387 52940011 + MGP_CASTEiJ_P0096453 Mtmr1 protein_coding protein_coding MGP_CASTEiJ_T0096454.1 MGP_CASTEiJ_G0034747.1 mouse_genomes_project X 52942470 52947858 + Mtmr1 protein_coding retained_intron MGP_CASTEiJ_T0096455.1 MGP_CASTEiJ_G0034747.1 mouse_genomes_project X 52943226 52948203 + Mtmr1 protein_coding retained_intron MGP_CASTEiJ_T0096456.1 MGP_CASTEiJ_G0034747.1 mouse_genomes_project X 52949269 52974965 + Mtmr1 protein_coding retained_intron MGP_CASTEiJ_T0016148.1 MGP_CASTEiJ_G0014311.1 mouse_genomes_project X 124841689 124842895 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101474.1 MGP_CASTEiJ_G0038387.1 mouse_genomes_project X 135743331 135743482 + Gm22522 snoRNA snoRNA MGP_CASTEiJ_T0015647.1 MGP_CASTEiJ_G0013810.1 mouse_genomes_project X 23292307 23292736 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015699.1 MGP_CASTEiJ_G0013862.1 mouse_genomes_project X 36260341 36260975 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005473.1 MGP_CASTEiJ_G0004620.1 mouse_genomes_project X 146429044 146502117 - Gm15261 antisense antisense MGP_CASTEiJ_T0015562.1 MGP_CASTEiJ_G0013725.1 mouse_genomes_project X 2442403 2443603 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095901.1 MGP_CASTEiJ_G0034560.1 mouse_genomes_project X 11439636 11466029 - MGP_CASTEiJ_P0095901 Ndp protein_coding protein_coding MGP_CASTEiJ_T0096346.1 MGP_CASTEiJ_G0034712.1 mouse_genomes_project X 38978527 38988127 - Arhgef6 protein_coding retained_intron MGP_CASTEiJ_T0096347.1 MGP_CASTEiJ_G0034712.1 mouse_genomes_project X 38978527 39094026 - MGP_CASTEiJ_P0096347 Arhgef6 protein_coding protein_coding MGP_CASTEiJ_T0096348.1 MGP_CASTEiJ_G0034712.1 mouse_genomes_project X 38980482 39030931 - MGP_CASTEiJ_P0096348 Arhgef6 protein_coding protein_coding MGP_CASTEiJ_T0096349.1 MGP_CASTEiJ_G0034712.1 mouse_genomes_project X 38986252 38998545 - MGP_CASTEiJ_P0096349 Arhgef6 protein_coding protein_coding MGP_CASTEiJ_T0096350.1 MGP_CASTEiJ_G0034712.1 mouse_genomes_project X 38996196 39080877 - MGP_CASTEiJ_P0096350 Arhgef6 protein_coding protein_coding MGP_CASTEiJ_T0096351.1 MGP_CASTEiJ_G0034712.1 mouse_genomes_project X 39020091 39080879 - Arhgef6 protein_coding retained_intron MGP_CASTEiJ_T0096352.1 MGP_CASTEiJ_G0034712.1 mouse_genomes_project X 39091203 39093803 - Arhgef6 protein_coding retained_intron MGP_CASTEiJ_T0096490.1 MGP_CASTEiJ_G0034761.1 mouse_genomes_project X 54429871 54433013 - MGP_CASTEiJ_P0096490 Cetn2 protein_coding protein_coding MGP_CASTEiJ_T0096491.1 MGP_CASTEiJ_G0034761.1 mouse_genomes_project X 54430371 54434472 - MGP_CASTEiJ_P0096491 Cetn2 protein_coding protein_coding MGP_CASTEiJ_T0096492.1 MGP_CASTEiJ_G0034761.1 mouse_genomes_project X 54431070 54434440 - MGP_CASTEiJ_P0096492 Cetn2 protein_coding protein_coding MGP_CASTEiJ_T0015593.1 MGP_CASTEiJ_G0013756.1 mouse_genomes_project X 9608579 9609347 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096902.1 MGP_CASTEiJ_G0034846.1 mouse_genomes_project X 60764304 61027038 - MGP_CASTEiJ_P0096902 Gm7173 protein_coding protein_coding MGP_CASTEiJ_T0096903.1 MGP_CASTEiJ_G0034846.1 mouse_genomes_project X 60835135 60862809 - MGP_CASTEiJ_P0096903 Gm7173 protein_coding protein_coding MGP_CASTEiJ_T0096904.1 MGP_CASTEiJ_G0034846.1 mouse_genomes_project X 60856168 60862914 - Gm7173 protein_coding processed_transcript MGP_CASTEiJ_T0096905.1 MGP_CASTEiJ_G0034846.1 mouse_genomes_project X 60908634 60941795 - MGP_CASTEiJ_P0096905 Gm7173 protein_coding protein_coding MGP_CASTEiJ_T0096906.1 MGP_CASTEiJ_G0034846.1 mouse_genomes_project X 60978694 61027038 - MGP_CASTEiJ_P0096906 Gm7173 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096907.1 MGP_CASTEiJ_G0034846.1 mouse_genomes_project X 60988094 61027038 - MGP_CASTEiJ_P0096907 Gm7173 protein_coding protein_coding MGP_CASTEiJ_T0096908.1 MGP_CASTEiJ_G0034846.1 mouse_genomes_project X 60996395 61027038 - MGP_CASTEiJ_P0096908 Gm7173 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096295.1 MGP_CASTEiJ_G0034691.1 mouse_genomes_project X 36514153 36515327 - MGP_CASTEiJ_P0096295 protein_coding protein_coding MGP_CASTEiJ_T0016204.1 MGP_CASTEiJ_G0014367.1 mouse_genomes_project X 137652903 137653385 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095858.1 MGP_CASTEiJ_G0034548.1 mouse_genomes_project X 7349748 7441871 - MGP_CASTEiJ_P0095858 Med14 protein_coding protein_coding MGP_CASTEiJ_T0095859.1 MGP_CASTEiJ_G0034548.1 mouse_genomes_project X 7353418 7391766 - MGP_CASTEiJ_P0095859 Med14 protein_coding protein_coding MGP_CASTEiJ_T0095860.1 MGP_CASTEiJ_G0034548.1 mouse_genomes_project X 7354135 7441871 - Med14 protein_coding retained_intron MGP_CASTEiJ_T0095861.1 MGP_CASTEiJ_G0034548.1 mouse_genomes_project X 7381510 7389582 - Med14 protein_coding retained_intron MGP_CASTEiJ_T0095862.1 MGP_CASTEiJ_G0034548.1 mouse_genomes_project X 7384267 7441871 - MGP_CASTEiJ_P0095862 Med14 protein_coding protein_coding MGP_CASTEiJ_T0100240.1 MGP_CASTEiJ_G0037153.1 mouse_genomes_project X 141688672 141688778 - Gm25367 snRNA snRNA MGP_CASTEiJ_T0015978.1 MGP_CASTEiJ_G0014141.1 mouse_genomes_project X 92953582 92954131 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101678.1 MGP_CASTEiJ_G0038507.1 mouse_genomes_project X 2694862 2695684 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0009206.1 MGP_CASTEiJ_G0007396.1 mouse_genomes_project X 143961968 143965401 - Gm15226 lincRNA lincRNA MGP_CASTEiJ_T0017852.1 MGP_CASTEiJ_G0015086.1 mouse_genomes_project X 7742845 7746016 + 5730405O15Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017853.1 MGP_CASTEiJ_G0015086.1 mouse_genomes_project X 7742881 7746103 + 5730405O15Rik processed_transcript processed_transcript MGP_CASTEiJ_T0098690.1 MGP_CASTEiJ_G0035621.1 mouse_genomes_project X 32827067 32827155 + n-R5s6 rRNA rRNA MGP_CASTEiJ_T0011442.1 MGP_CASTEiJ_G0009630.1 mouse_genomes_project X 107440151 107440429 - Gm22225 misc_RNA misc_RNA MGP_CASTEiJ_T0100233.1 MGP_CASTEiJ_G0037146.1 mouse_genomes_project X 131281083 131281183 - Gm25895 snRNA snRNA MGP_CASTEiJ_T0097652.1 MGP_CASTEiJ_G0035074.1 mouse_genomes_project X 115158604 115159656 + MGP_CASTEiJ_P0097652 H2bfm protein_coding protein_coding MGP_CASTEiJ_T0009188.1 MGP_CASTEiJ_G0007385.1 mouse_genomes_project X 107207845 107210695 + 4930558G05Rik lincRNA lincRNA MGP_CASTEiJ_T0009187.1 MGP_CASTEiJ_G0007384.1 mouse_genomes_project X 100622808 100624813 - Gm14929 lincRNA lincRNA MGP_CASTEiJ_T0102651.1 MGP_CASTEiJ_G0039375.1 mouse_genomes_project X 115358711 115359547 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015922.1 MGP_CASTEiJ_G0014085.1 mouse_genomes_project X 84345317 84346076 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102657.1 MGP_CASTEiJ_G0039381.1 mouse_genomes_project X 136424228 136428787 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015844.1 MGP_CASTEiJ_G0014007.1 mouse_genomes_project X 70429666 70430832 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016085.1 MGP_CASTEiJ_G0014248.1 mouse_genomes_project X 115358711 115359547 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098004.1 MGP_CASTEiJ_G0035161.1 mouse_genomes_project X 130882128 130885468 + MGP_CASTEiJ_P0098004 Ubqln2 protein_coding protein_coding MGP_CASTEiJ_T0101428.1 MGP_CASTEiJ_G0038341.1 mouse_genomes_project X 34740269 34740386 + Gm22539 snoRNA snoRNA MGP_CASTEiJ_T0096435.1 MGP_CASTEiJ_G0034746.1 mouse_genomes_project X 52752296 52862837 + MGP_CASTEiJ_P0096435 Mtm1 protein_coding protein_coding MGP_CASTEiJ_T0096436.1 MGP_CASTEiJ_G0034746.1 mouse_genomes_project X 52756503 52862837 + MGP_CASTEiJ_P0096436 Mtm1 protein_coding protein_coding MGP_CASTEiJ_T0096437.1 MGP_CASTEiJ_G0034746.1 mouse_genomes_project X 52756503 52862837 + MGP_CASTEiJ_P0096437 Mtm1 protein_coding protein_coding MGP_CASTEiJ_T0096438.1 MGP_CASTEiJ_G0034746.1 mouse_genomes_project X 52756503 52807100 + MGP_CASTEiJ_P0096438 Mtm1 protein_coding protein_coding MGP_CASTEiJ_T0096439.1 MGP_CASTEiJ_G0034746.1 mouse_genomes_project X 52756525 52862830 + MGP_CASTEiJ_P0096439 Mtm1 protein_coding protein_coding MGP_CASTEiJ_T0096440.1 MGP_CASTEiJ_G0034746.1 mouse_genomes_project X 52756528 52844583 + Mtm1 protein_coding retained_intron MGP_CASTEiJ_T0096441.1 MGP_CASTEiJ_G0034746.1 mouse_genomes_project X 52756533 52843380 + Mtm1 protein_coding retained_intron MGP_CASTEiJ_T0096442.1 MGP_CASTEiJ_G0034746.1 mouse_genomes_project X 52756536 52862807 + MGP_CASTEiJ_P0096442 Mtm1 protein_coding protein_coding MGP_CASTEiJ_T0096443.1 MGP_CASTEiJ_G0034746.1 mouse_genomes_project X 52756556 52857848 + Mtm1 protein_coding retained_intron MGP_CASTEiJ_T0096444.1 MGP_CASTEiJ_G0034746.1 mouse_genomes_project X 52756579 52862807 + MGP_CASTEiJ_P0096444 Mtm1 protein_coding protein_coding MGP_CASTEiJ_T0096445.1 MGP_CASTEiJ_G0034746.1 mouse_genomes_project X 52756582 52778897 + Mtm1 protein_coding retained_intron MGP_CASTEiJ_T0096446.1 MGP_CASTEiJ_G0034746.1 mouse_genomes_project X 52756582 52799485 + Mtm1 protein_coding retained_intron MGP_CASTEiJ_T0096447.1 MGP_CASTEiJ_G0034746.1 mouse_genomes_project X 52847088 52863233 + Mtm1 protein_coding retained_intron MGP_CASTEiJ_T0096103.1 MGP_CASTEiJ_G0034633.1 mouse_genomes_project X 22264859 22266937 + MGP_CASTEiJ_P0096103 6030498E09Rik protein_coding protein_coding MGP_CASTEiJ_T0097531.1 MGP_CASTEiJ_G0035031.1 mouse_genomes_project X 112527375 112583290 + MGP_CASTEiJ_P0097531 Drp2 protein_coding protein_coding MGP_CASTEiJ_T0097532.1 MGP_CASTEiJ_G0035031.1 mouse_genomes_project X 112527452 112587154 + MGP_CASTEiJ_P0097532 Drp2 protein_coding protein_coding MGP_CASTEiJ_T0097533.1 MGP_CASTEiJ_G0035031.1 mouse_genomes_project X 112528526 112584194 + MGP_CASTEiJ_P0097533 Drp2 protein_coding protein_coding MGP_CASTEiJ_T0097534.1 MGP_CASTEiJ_G0035031.1 mouse_genomes_project X 112528548 112583597 + MGP_CASTEiJ_P0097534 Drp2 protein_coding protein_coding MGP_CASTEiJ_T0097535.1 MGP_CASTEiJ_G0035031.1 mouse_genomes_project X 112552293 112566037 + Drp2 protein_coding processed_transcript MGP_CASTEiJ_T0097536.1 MGP_CASTEiJ_G0035031.1 mouse_genomes_project X 112552347 112583990 + Drp2 protein_coding retained_intron MGP_CASTEiJ_T0015862.1 MGP_CASTEiJ_G0014025.1 mouse_genomes_project X 73302275 73304529 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097118.1 MGP_CASTEiJ_G0034909.1 mouse_genomes_project X 81799787 81812836 + MGP_CASTEiJ_P0097118 Arr3 protein_coding protein_coding MGP_CASTEiJ_T0097119.1 MGP_CASTEiJ_G0034909.1 mouse_genomes_project X 81799813 81807940 + Arr3 protein_coding retained_intron MGP_CASTEiJ_T0097120.1 MGP_CASTEiJ_G0034909.1 mouse_genomes_project X 81799834 81807383 + Arr3 protein_coding retained_intron MGP_CASTEiJ_T0097121.1 MGP_CASTEiJ_G0034909.1 mouse_genomes_project X 81799845 81808148 + Arr3 protein_coding retained_intron MGP_CASTEiJ_T0097122.1 MGP_CASTEiJ_G0034909.1 mouse_genomes_project X 81799852 81812836 + Arr3 protein_coding retained_intron MGP_CASTEiJ_T0097123.1 MGP_CASTEiJ_G0034909.1 mouse_genomes_project X 81799937 81806253 + MGP_CASTEiJ_P0097123 Arr3 protein_coding protein_coding MGP_CASTEiJ_T0097124.1 MGP_CASTEiJ_G0034909.1 mouse_genomes_project X 81800884 81812842 + MGP_CASTEiJ_P0097124 Arr3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097125.1 MGP_CASTEiJ_G0034909.1 mouse_genomes_project X 81806147 81808747 + Arr3 protein_coding retained_intron MGP_CASTEiJ_T0016214.1 MGP_CASTEiJ_G0014377.1 mouse_genomes_project X 140217285 140217727 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016163.1 MGP_CASTEiJ_G0014326.1 mouse_genomes_project X 129940681 129941207 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101455.1 MGP_CASTEiJ_G0038368.1 mouse_genomes_project X 105101106 105101229 + Gm23586 snoRNA snoRNA MGP_CASTEiJ_T0016145.1 MGP_CASTEiJ_G0014308.1 mouse_genomes_project X 124350307 124351391 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015769.1 MGP_CASTEiJ_G0013932.1 mouse_genomes_project X 52048426 52048932 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016056.1 MGP_CASTEiJ_G0014219.1 mouse_genomes_project X 111043854 111044906 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097661.1 MGP_CASTEiJ_G0035079.1 mouse_genomes_project X 115244441 115247663 + MGP_CASTEiJ_P0097661 Zcchc18 protein_coding protein_coding MGP_CASTEiJ_T0097662.1 MGP_CASTEiJ_G0035079.1 mouse_genomes_project X 115244445 115247401 + MGP_CASTEiJ_P0097662 Zcchc18 protein_coding protein_coding MGP_CASTEiJ_T0097663.1 MGP_CASTEiJ_G0035079.1 mouse_genomes_project X 115244584 115249754 + MGP_CASTEiJ_P0097663 Zcchc18 protein_coding protein_coding MGP_CASTEiJ_T0096029.1 MGP_CASTEiJ_G0034600.1 mouse_genomes_project X 19990233 19998138 + MGP_CASTEiJ_P0096029 Pgrmc1 protein_coding protein_coding MGP_CASTEiJ_T0016025.1 MGP_CASTEiJ_G0014188.1 mouse_genomes_project X 101324955 101325607 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015779.1 MGP_CASTEiJ_G0013942.1 mouse_genomes_project X 54970559 54974134 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010893.1 MGP_CASTEiJ_G0009081.1 mouse_genomes_project X 121292951 121293046 - Gm44351 miRNA miRNA MGP_CASTEiJ_T0101472.1 MGP_CASTEiJ_G0038385.1 mouse_genomes_project X 134642828 134642960 - Gm25795 snoRNA snoRNA MGP_CASTEiJ_T0016037.1 MGP_CASTEiJ_G0014200.1 mouse_genomes_project X 104905270 104905773 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016043.1 MGP_CASTEiJ_G0014206.1 mouse_genomes_project X 107627223 107628225 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015787.1 MGP_CASTEiJ_G0013950.1 mouse_genomes_project X 56682321 56683337 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011449.1 MGP_CASTEiJ_G0009637.1 mouse_genomes_project X 119030686 119030988 - Gm22025 misc_RNA misc_RNA MGP_CASTEiJ_T0100227.1 MGP_CASTEiJ_G0037140.1 mouse_genomes_project X 123436975 123437118 + Gm25097 snRNA snRNA MGP_CASTEiJ_T0100175.1 MGP_CASTEiJ_G0037088.1 mouse_genomes_project X 13844551 13844658 + Gm22783 snRNA snRNA MGP_CASTEiJ_T0097284.1 MGP_CASTEiJ_G0034950.1 mouse_genomes_project X 85095117 85227376 - MGP_CASTEiJ_P0097284 Slc16a2 protein_coding protein_coding MGP_CASTEiJ_T0097285.1 MGP_CASTEiJ_G0034950.1 mouse_genomes_project X 85097566 85104214 - Slc16a2 protein_coding retained_intron MGP_CASTEiJ_T0097286.1 MGP_CASTEiJ_G0034950.1 mouse_genomes_project X 85104143 85136375 - Slc16a2 protein_coding processed_transcript MGP_CASTEiJ_T0101456.1 MGP_CASTEiJ_G0038369.1 mouse_genomes_project X 107304999 107305131 - Gm26029 snoRNA snoRNA MGP_CASTEiJ_T0095920.1 MGP_CASTEiJ_G0034568.1 mouse_genomes_project X 14770202 14808192 + MGP_CASTEiJ_P0095920 Rp2 protein_coding protein_coding MGP_CASTEiJ_T0095921.1 MGP_CASTEiJ_G0034568.1 mouse_genomes_project X 14770202 14808188 + MGP_CASTEiJ_P0095921 Rp2 protein_coding protein_coding MGP_CASTEiJ_T0095922.1 MGP_CASTEiJ_G0034568.1 mouse_genomes_project X 14770280 14808188 + MGP_CASTEiJ_P0095922 Rp2 protein_coding protein_coding MGP_CASTEiJ_T0095923.1 MGP_CASTEiJ_G0034568.1 mouse_genomes_project X 14770296 14812754 + MGP_CASTEiJ_P0095923 Rp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095924.1 MGP_CASTEiJ_G0034568.1 mouse_genomes_project X 14770340 14812731 + MGP_CASTEiJ_P0095924 Rp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0010803.1 MGP_CASTEiJ_G0008991.1 mouse_genomes_project X 1771943 1772039 - Mir532 miRNA miRNA MGP_CASTEiJ_T0010884.1 MGP_CASTEiJ_G0009072.1 mouse_genomes_project X 94153684 94153754 - Mir361 miRNA miRNA MGP_CASTEiJ_T0097762.1 MGP_CASTEiJ_G0035109.1 mouse_genomes_project X 119455878 119461584 + MGP_CASTEiJ_P0097762 protein_coding protein_coding MGP_CASTEiJ_T0015934.1 MGP_CASTEiJ_G0014097.1 mouse_genomes_project X 84871368 84871821 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015770.1 MGP_CASTEiJ_G0013933.1 mouse_genomes_project X 52131222 52131715 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011435.1 MGP_CASTEiJ_G0009623.1 mouse_genomes_project X 84879211 84879334 + Gm27875 misc_RNA misc_RNA MGP_CASTEiJ_T0016071.1 MGP_CASTEiJ_G0014234.1 mouse_genomes_project X 113875568 113876322 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096071.1 MGP_CASTEiJ_G0034622.1 mouse_genomes_project X 21389385 21397936 - MGP_CASTEiJ_P0096071 Rhox11 protein_coding protein_coding MGP_CASTEiJ_T0015601.1 MGP_CASTEiJ_G0013764.1 mouse_genomes_project X 11808683 11811016 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015966.1 MGP_CASTEiJ_G0014129.1 mouse_genomes_project X 88744146 88744850 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096878.1 MGP_CASTEiJ_G0034835.1 mouse_genomes_project X 58101576 58105981 + MGP_CASTEiJ_P0096878 Cldn34b4 protein_coding protein_coding MGP_CASTEiJ_T0096879.1 MGP_CASTEiJ_G0034835.1 mouse_genomes_project X 58101678 58105890 + MGP_CASTEiJ_P0096879 Cldn34b4 protein_coding protein_coding MGP_CASTEiJ_T0015958.1 MGP_CASTEiJ_G0014121.1 mouse_genomes_project X 88072858 88074204 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009190.1 MGP_CASTEiJ_G0007387.1 mouse_genomes_project X 118541576 118646283 - Gm15046 lincRNA lincRNA MGP_CASTEiJ_T0015812.1 MGP_CASTEiJ_G0013975.1 mouse_genomes_project X 62084490 62084715 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016033.1 MGP_CASTEiJ_G0014196.1 mouse_genomes_project X 103066346 103066642 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095897.1 MGP_CASTEiJ_G0034559.1 mouse_genomes_project X 11256622 11325320 - MGP_CASTEiJ_P0095897 Maob protein_coding protein_coding MGP_CASTEiJ_T0095898.1 MGP_CASTEiJ_G0034559.1 mouse_genomes_project X 11257383 11325320 - MGP_CASTEiJ_P0095898 Maob protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095899.1 MGP_CASTEiJ_G0034559.1 mouse_genomes_project X 11266364 11325320 - MGP_CASTEiJ_P0095899 Maob protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095900.1 MGP_CASTEiJ_G0034559.1 mouse_genomes_project X 11288293 11374658 - MGP_CASTEiJ_P0095900 Maob protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0015685.1 MGP_CASTEiJ_G0013848.1 mouse_genomes_project X 32900818 32901503 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097900.1 MGP_CASTEiJ_G0035140.1 mouse_genomes_project X 128434247 128470118 + MGP_CASTEiJ_P0097900 Fgd1 protein_coding protein_coding MGP_CASTEiJ_T0097901.1 MGP_CASTEiJ_G0035140.1 mouse_genomes_project X 128435268 128470118 + MGP_CASTEiJ_P0097901 Fgd1 protein_coding protein_coding MGP_CASTEiJ_T0097902.1 MGP_CASTEiJ_G0035140.1 mouse_genomes_project X 128448200 128450486 + Fgd1 protein_coding retained_intron MGP_CASTEiJ_T0097903.1 MGP_CASTEiJ_G0035140.1 mouse_genomes_project X 128466704 128467776 + Fgd1 protein_coding retained_intron MGP_CASTEiJ_T0096705.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55935100 55936104 + Taz protein_coding processed_transcript MGP_CASTEiJ_T0096706.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55935100 55936054 + Taz protein_coding processed_transcript MGP_CASTEiJ_T0096707.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55935174 55943974 + MGP_CASTEiJ_P0096707 Taz protein_coding unknown_likely_coding MGP_CASTEiJ_T0096708.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55935885 55943576 + MGP_CASTEiJ_P0096708 Taz protein_coding protein_coding MGP_CASTEiJ_T0096709.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55935938 55939088 + Taz protein_coding retained_intron MGP_CASTEiJ_T0096710.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55935938 55941460 + Taz protein_coding retained_intron MGP_CASTEiJ_T0096711.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55935938 55943573 + Taz protein_coding retained_intron MGP_CASTEiJ_T0096712.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55935938 55943573 + MGP_CASTEiJ_P0096712 Taz protein_coding protein_coding MGP_CASTEiJ_T0096713.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55935948 55942129 + Taz protein_coding retained_intron MGP_CASTEiJ_T0096714.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55935948 55941704 + Taz protein_coding retained_intron MGP_CASTEiJ_T0096715.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55935950 55943573 + MGP_CASTEiJ_P0096715 Taz protein_coding protein_coding MGP_CASTEiJ_T0096716.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55935954 55937158 + Taz protein_coding retained_intron MGP_CASTEiJ_T0096717.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55935960 55942583 + MGP_CASTEiJ_P0096717 Taz protein_coding protein_coding MGP_CASTEiJ_T0096718.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55935977 55937517 + Taz protein_coding retained_intron MGP_CASTEiJ_T0096719.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55936109 55942269 + Taz protein_coding retained_intron MGP_CASTEiJ_T0096720.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55936196 55942825 + MGP_CASTEiJ_P0096720 Taz protein_coding protein_coding MGP_CASTEiJ_T0096721.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55936270 55942910 + MGP_CASTEiJ_P0096721 Taz protein_coding protein_coding MGP_CASTEiJ_T0096722.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55937125 55942773 + MGP_CASTEiJ_P0096722 Taz protein_coding protein_coding MGP_CASTEiJ_T0096723.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55941089 55942034 + Taz protein_coding retained_intron MGP_CASTEiJ_T0096724.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55941444 55943159 + MGP_CASTEiJ_P0096724 Taz protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096725.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55941496 55943313 + MGP_CASTEiJ_P0096725 Taz protein_coding protein_coding MGP_CASTEiJ_T0096726.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55942086 55943156 + MGP_CASTEiJ_P0096726 Taz protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096727.1 MGP_CASTEiJ_G0034800.1 mouse_genomes_project X 55942097 55943106 + Taz protein_coding retained_intron MGP_CASTEiJ_T0097787.1 MGP_CASTEiJ_G0035121.1 mouse_genomes_project X 121606654 121715453 - MGP_CASTEiJ_P0097787 Chrdl1 protein_coding protein_coding MGP_CASTEiJ_T0097788.1 MGP_CASTEiJ_G0035121.1 mouse_genomes_project X 121606664 121719618 - MGP_CASTEiJ_P0097788 Chrdl1 protein_coding protein_coding MGP_CASTEiJ_T0097789.1 MGP_CASTEiJ_G0035121.1 mouse_genomes_project X 121618129 121719540 - MGP_CASTEiJ_P0097789 Chrdl1 protein_coding protein_coding MGP_CASTEiJ_T0097790.1 MGP_CASTEiJ_G0035121.1 mouse_genomes_project X 121618131 121719252 - MGP_CASTEiJ_P0097790 Chrdl1 protein_coding protein_coding MGP_CASTEiJ_T0015873.1 MGP_CASTEiJ_G0014036.1 mouse_genomes_project X 75754283 75756086 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016118.1 MGP_CASTEiJ_G0014281.1 mouse_genomes_project X 120535962 120536220 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098700.1 MGP_CASTEiJ_G0035631.1 mouse_genomes_project X 129361987 129362094 + n-R5s14 rRNA rRNA MGP_CASTEiJ_T0095596.1 MGP_CASTEiJ_G0034485.1 mouse_genomes_project X 714465 747196 - MGP_CASTEiJ_P0095596 Nudt10 protein_coding protein_coding MGP_CASTEiJ_T0009184.1 MGP_CASTEiJ_G0007381.1 mouse_genomes_project X 94052787 94081708 - Gm14936 lincRNA lincRNA MGP_CASTEiJ_T0015663.1 MGP_CASTEiJ_G0013826.1 mouse_genomes_project X 26694592 26694764 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096025.1 MGP_CASTEiJ_G0034599.1 mouse_genomes_project X 19816850 19823635 - Gm14569 protein_coding processed_transcript MGP_CASTEiJ_T0096026.1 MGP_CASTEiJ_G0034599.1 mouse_genomes_project X 19816850 19819930 - Gm14569 protein_coding processed_transcript MGP_CASTEiJ_T0096027.1 MGP_CASTEiJ_G0034599.1 mouse_genomes_project X 19816850 19889318 - MGP_CASTEiJ_P0096027 Gm14569 protein_coding protein_coding MGP_CASTEiJ_T0096028.1 MGP_CASTEiJ_G0034599.1 mouse_genomes_project X 19832792 19880479 - Gm14569 protein_coding processed_transcript MGP_CASTEiJ_T0017928.1 MGP_CASTEiJ_G0015111.1 mouse_genomes_project X 117558878 117684449 - Platr21 processed_transcript processed_transcript MGP_CASTEiJ_T0017929.1 MGP_CASTEiJ_G0015111.1 mouse_genomes_project X 117675175 117685407 - Platr21 processed_transcript processed_transcript MGP_CASTEiJ_T0100195.1 MGP_CASTEiJ_G0037108.1 mouse_genomes_project X 41940841 41940947 + Gm22287 snRNA snRNA MGP_CASTEiJ_T0101683.1 MGP_CASTEiJ_G0038510.1 mouse_genomes_project X 15787613 15791359 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101684.1 MGP_CASTEiJ_G0038510.1 mouse_genomes_project X 15787688 15789786 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0016192.1 MGP_CASTEiJ_G0014355.1 mouse_genomes_project X 135533171 135534258 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010805.1 MGP_CASTEiJ_G0008993.1 mouse_genomes_project X 8364049 8364118 + Gm25246 miRNA miRNA MGP_CASTEiJ_T0015641.1 MGP_CASTEiJ_G0013804.1 mouse_genomes_project X 22431520 22432467 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096275.1 MGP_CASTEiJ_G0034681.1 mouse_genomes_project X 35707507 35715779 + MGP_CASTEiJ_P0096275 Ccdc160 protein_coding protein_coding MGP_CASTEiJ_T0015588.1 MGP_CASTEiJ_G0013751.1 mouse_genomes_project X 8194663 8195184 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095973.1 MGP_CASTEiJ_G0034580.1 mouse_genomes_project X 15350925 15368117 - MGP_CASTEiJ_P0095973 Elk1 protein_coding protein_coding MGP_CASTEiJ_T0095974.1 MGP_CASTEiJ_G0034580.1 mouse_genomes_project X 15357247 15368117 - Elk1 protein_coding retained_intron MGP_CASTEiJ_T0015722.1 MGP_CASTEiJ_G0013885.1 mouse_genomes_project X 42382536 42383330 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096299.1 MGP_CASTEiJ_G0034695.1 mouse_genomes_project X 36579265 36597626 - MGP_CASTEiJ_P0096299 1700013H16Rik protein_coding protein_coding MGP_CASTEiJ_T0015665.1 MGP_CASTEiJ_G0013828.1 mouse_genomes_project X 26898754 26899472 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015783.1 MGP_CASTEiJ_G0013946.1 mouse_genomes_project X 56177364 56177745 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097436.1 MGP_CASTEiJ_G0034998.1 mouse_genomes_project X 93695918 93728782 + MGP_CASTEiJ_P0097436 Zfp711 protein_coding protein_coding MGP_CASTEiJ_T0097437.1 MGP_CASTEiJ_G0034998.1 mouse_genomes_project X 93699665 93728790 + MGP_CASTEiJ_P0097437 Zfp711 protein_coding protein_coding MGP_CASTEiJ_T0097438.1 MGP_CASTEiJ_G0034998.1 mouse_genomes_project X 93710744 93725630 + MGP_CASTEiJ_P0097438 Zfp711 protein_coding protein_coding MGP_CASTEiJ_T0016100.1 MGP_CASTEiJ_G0014263.1 mouse_genomes_project X 118821213 118822066 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016180.1 MGP_CASTEiJ_G0014343.1 mouse_genomes_project X 133893681 133896029 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011434.1 MGP_CASTEiJ_G0009622.1 mouse_genomes_project X 84864989 84865070 + Gm27520 misc_RNA misc_RNA MGP_CASTEiJ_T0005466.1 MGP_CASTEiJ_G0004614.1 mouse_genomes_project X 133010564 133011137 + Gm15156 antisense antisense MGP_CASTEiJ_T0015818.1 MGP_CASTEiJ_G0013981.1 mouse_genomes_project X 63927584 63928386 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096163.1 MGP_CASTEiJ_G0034648.1 mouse_genomes_project X 30829983 30903914 - MGP_CASTEiJ_P0096163 Smarca1 protein_coding protein_coding MGP_CASTEiJ_T0096164.1 MGP_CASTEiJ_G0034648.1 mouse_genomes_project X 30829985 30903914 - MGP_CASTEiJ_P0096164 Smarca1 protein_coding protein_coding MGP_CASTEiJ_T0096165.1 MGP_CASTEiJ_G0034648.1 mouse_genomes_project X 30830248 30903947 - MGP_CASTEiJ_P0096165 Smarca1 protein_coding protein_coding MGP_CASTEiJ_T0096166.1 MGP_CASTEiJ_G0034648.1 mouse_genomes_project X 30860499 30903791 - MGP_CASTEiJ_P0096166 Smarca1 protein_coding protein_coding MGP_CASTEiJ_T0096167.1 MGP_CASTEiJ_G0034648.1 mouse_genomes_project X 30885038 30903827 - MGP_CASTEiJ_P0096167 Smarca1 protein_coding protein_coding MGP_CASTEiJ_T0096168.1 MGP_CASTEiJ_G0034648.1 mouse_genomes_project X 30898540 30904336 - MGP_CASTEiJ_P0096168 Smarca1 protein_coding protein_coding MGP_CASTEiJ_T0096169.1 MGP_CASTEiJ_G0034648.1 mouse_genomes_project X 30901205 30904369 - Smarca1 protein_coding processed_transcript MGP_CASTEiJ_T0096934.1 MGP_CASTEiJ_G0034854.1 mouse_genomes_project X 67043340 67120504 - MGP_CASTEiJ_P0096934 Gk protein_coding protein_coding MGP_CASTEiJ_T0096935.1 MGP_CASTEiJ_G0034854.1 mouse_genomes_project X 67043340 67120491 - MGP_CASTEiJ_P0096935 Gk protein_coding protein_coding MGP_CASTEiJ_T0096936.1 MGP_CASTEiJ_G0034854.1 mouse_genomes_project X 67043340 67120686 - MGP_CASTEiJ_P0096936 Gk protein_coding protein_coding MGP_CASTEiJ_T0096937.1 MGP_CASTEiJ_G0034854.1 mouse_genomes_project X 67043340 67120520 - MGP_CASTEiJ_P0096937 Gk protein_coding protein_coding MGP_CASTEiJ_T0096938.1 MGP_CASTEiJ_G0034854.1 mouse_genomes_project X 67048365 67053728 - Gk protein_coding processed_transcript MGP_CASTEiJ_T0096939.1 MGP_CASTEiJ_G0034854.1 mouse_genomes_project X 67053647 67055705 - Gk protein_coding retained_intron MGP_CASTEiJ_T0096940.1 MGP_CASTEiJ_G0034854.1 mouse_genomes_project X 67053943 67080174 - Gk protein_coding retained_intron MGP_CASTEiJ_T0096941.1 MGP_CASTEiJ_G0034854.1 mouse_genomes_project X 67100112 67103565 - Gk protein_coding retained_intron MGP_CASTEiJ_T0097711.1 MGP_CASTEiJ_G0035095.1 mouse_genomes_project X 118127763 118130561 - MGP_CASTEiJ_P0097711 Ripply1 protein_coding protein_coding MGP_CASTEiJ_T0095863.1 MGP_CASTEiJ_G0034549.1 mouse_genomes_project X 7774662 7828977 + MGP_CASTEiJ_P0095863 protein_coding protein_coding MGP_CASTEiJ_T0095864.1 MGP_CASTEiJ_G0034549.1 mouse_genomes_project X 7774678 7827725 + protein_coding retained_intron MGP_CASTEiJ_T0095865.1 MGP_CASTEiJ_G0034549.1 mouse_genomes_project X 7774678 7881979 + MGP_CASTEiJ_P0095865 protein_coding protein_coding MGP_CASTEiJ_T0095866.1 MGP_CASTEiJ_G0034549.1 mouse_genomes_project X 7775349 7877776 + MGP_CASTEiJ_P0095866 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095867.1 MGP_CASTEiJ_G0034549.1 mouse_genomes_project X 7835239 7839241 + protein_coding retained_intron MGP_CASTEiJ_T0095868.1 MGP_CASTEiJ_G0034549.1 mouse_genomes_project X 7835506 7840454 + protein_coding retained_intron MGP_CASTEiJ_T0095869.1 MGP_CASTEiJ_G0034549.1 mouse_genomes_project X 7868594 7878190 + MGP_CASTEiJ_P0095869 protein_coding protein_coding MGP_CASTEiJ_T0096917.1 MGP_CASTEiJ_G0034851.1 mouse_genomes_project X 64809571 64810914 - MGP_CASTEiJ_P0096917 Tsga8 protein_coding protein_coding MGP_CASTEiJ_T0005438.1 MGP_CASTEiJ_G0004592.1 mouse_genomes_project X 38070035 38076290 - antisense antisense MGP_CASTEiJ_T0097708.1 MGP_CASTEiJ_G0035093.1 mouse_genomes_project X 118031514 118100194 + MGP_CASTEiJ_P0097708 Tbc1d8b protein_coding protein_coding MGP_CASTEiJ_T0097710.1 MGP_CASTEiJ_G0035093.1 mouse_genomes_project X 118081567 118092029 + Tbc1d8b protein_coding processed_transcript MGP_CASTEiJ_T0097572.1 MGP_CASTEiJ_G0035042.1 mouse_genomes_project X 112958358 112961738 - MGP_CASTEiJ_P0097572 Armcx2 protein_coding protein_coding MGP_CASTEiJ_T0097573.1 MGP_CASTEiJ_G0035042.1 mouse_genomes_project X 112958360 112963434 - MGP_CASTEiJ_P0097573 Armcx2 protein_coding protein_coding MGP_CASTEiJ_T0097574.1 MGP_CASTEiJ_G0035042.1 mouse_genomes_project X 112958360 112963434 - MGP_CASTEiJ_P0097574 Armcx2 protein_coding protein_coding MGP_CASTEiJ_T0097575.1 MGP_CASTEiJ_G0035042.1 mouse_genomes_project X 112958360 112963209 - MGP_CASTEiJ_P0097575 Armcx2 protein_coding protein_coding MGP_CASTEiJ_T0097576.1 MGP_CASTEiJ_G0035042.1 mouse_genomes_project X 112960698 112961724 - Armcx2 protein_coding processed_transcript MGP_CASTEiJ_T0097577.1 MGP_CASTEiJ_G0035042.1 mouse_genomes_project X 112961473 112962156 - Armcx2 protein_coding processed_transcript MGP_CASTEiJ_T0097578.1 MGP_CASTEiJ_G0035042.1 mouse_genomes_project X 112962100 112963174 - Armcx2 protein_coding processed_transcript MGP_CASTEiJ_T0101423.1 MGP_CASTEiJ_G0038336.1 mouse_genomes_project X 1753203 1753279 + Gm26401 snoRNA snoRNA MGP_CASTEiJ_T0015855.1 MGP_CASTEiJ_G0014018.1 mouse_genomes_project X 72654762 72655781 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005442.1 MGP_CASTEiJ_G0004596.1 mouse_genomes_project X 50903842 50908544 - Gm14705 antisense antisense MGP_CASTEiJ_T0005443.1 MGP_CASTEiJ_G0004596.1 mouse_genomes_project X 50905204 50907616 - Gm14705 antisense antisense MGP_CASTEiJ_T0010828.1 MGP_CASTEiJ_G0009016.1 mouse_genomes_project X 35987813 35987898 - Mir542 miRNA miRNA MGP_CASTEiJ_T0096671.1 MGP_CASTEiJ_G0034795.1 mouse_genomes_project X 55820784 55851117 + MGP_CASTEiJ_P0096671 Tktl1 protein_coding protein_coding MGP_CASTEiJ_T0096672.1 MGP_CASTEiJ_G0034795.1 mouse_genomes_project X 55820815 55839596 + MGP_CASTEiJ_P0096672 Tktl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0015762.1 MGP_CASTEiJ_G0013925.1 mouse_genomes_project X 49915701 49916314 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100226.1 MGP_CASTEiJ_G0037139.1 mouse_genomes_project X 119071993 119072100 + Gm23199 snRNA snRNA MGP_CASTEiJ_T0005441.1 MGP_CASTEiJ_G0004595.1 mouse_genomes_project X 42587167 42592870 + Gm14662 antisense antisense MGP_CASTEiJ_T0102624.1 MGP_CASTEiJ_G0039348.1 mouse_genomes_project X 39400225 39400369 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015587.1 MGP_CASTEiJ_G0013750.1 mouse_genomes_project X 8065881 8066694 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101467.1 MGP_CASTEiJ_G0038380.1 mouse_genomes_project X 125748148 125748277 - Gm25107 snoRNA snoRNA MGP_CASTEiJ_T0010817.1 MGP_CASTEiJ_G0009005.1 mouse_genomes_project X 31682400 31682519 + Gm27828 miRNA miRNA MGP_CASTEiJ_T0098777.1 MGP_CASTEiJ_G0035708.1 mouse_genomes_project X 96360531 96360912 + Gm27414 scaRNA scaRNA MGP_CASTEiJ_T0016170.1 MGP_CASTEiJ_G0014333.1 mouse_genomes_project X 132505026 132506323 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097555.1 MGP_CASTEiJ_G0035038.1 mouse_genomes_project X 112828458 112838696 + MGP_CASTEiJ_P0097555 Armcx4 protein_coding protein_coding MGP_CASTEiJ_T0095993.1 MGP_CASTEiJ_G0034587.1 mouse_genomes_project X 15901033 15905653 + MGP_CASTEiJ_P0095993 Agtr2 protein_coding protein_coding MGP_CASTEiJ_T0095994.1 MGP_CASTEiJ_G0034587.1 mouse_genomes_project X 15901211 15902792 + Agtr2 protein_coding processed_transcript MGP_CASTEiJ_T0097222.1 MGP_CASTEiJ_G0034928.1 mouse_genomes_project X 82873010 82919014 + MGP_CASTEiJ_P0097222 Ogt protein_coding protein_coding MGP_CASTEiJ_T0097223.1 MGP_CASTEiJ_G0034928.1 mouse_genomes_project X 82873012 82886686 + Ogt protein_coding retained_intron MGP_CASTEiJ_T0097224.1 MGP_CASTEiJ_G0034928.1 mouse_genomes_project X 82873014 82920427 + MGP_CASTEiJ_P0097224 Ogt protein_coding protein_coding MGP_CASTEiJ_T0097225.1 MGP_CASTEiJ_G0034928.1 mouse_genomes_project X 82873044 82888120 + Ogt protein_coding processed_transcript MGP_CASTEiJ_T0097226.1 MGP_CASTEiJ_G0034928.1 mouse_genomes_project X 82873058 82888388 + Ogt protein_coding retained_intron MGP_CASTEiJ_T0097227.1 MGP_CASTEiJ_G0034928.1 mouse_genomes_project X 82873090 82886699 + Ogt protein_coding retained_intron MGP_CASTEiJ_T0097228.1 MGP_CASTEiJ_G0034928.1 mouse_genomes_project X 82889162 82919232 + Ogt protein_coding processed_transcript MGP_CASTEiJ_T0015970.1 MGP_CASTEiJ_G0014133.1 mouse_genomes_project X 90466216 90467097 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097803.1 MGP_CASTEiJ_G0035124.1 mouse_genomes_project X 122191219 122270687 - MGP_CASTEiJ_P0097803 Dcx protein_coding protein_coding MGP_CASTEiJ_T0097804.1 MGP_CASTEiJ_G0035124.1 mouse_genomes_project X 122196062 122270580 - MGP_CASTEiJ_P0097804 Dcx protein_coding protein_coding MGP_CASTEiJ_T0097805.1 MGP_CASTEiJ_G0035124.1 mouse_genomes_project X 122197148 122270500 - MGP_CASTEiJ_P0097805 Dcx protein_coding protein_coding MGP_CASTEiJ_T0097806.1 MGP_CASTEiJ_G0035124.1 mouse_genomes_project X 122198847 122270595 - MGP_CASTEiJ_P0097806 Dcx protein_coding protein_coding MGP_CASTEiJ_T0097807.1 MGP_CASTEiJ_G0035124.1 mouse_genomes_project X 122205440 122270426 - Dcx protein_coding retained_intron MGP_CASTEiJ_T0097808.1 MGP_CASTEiJ_G0035124.1 mouse_genomes_project X 122209952 122270495 - Dcx protein_coding retained_intron MGP_CASTEiJ_T0097229.1 MGP_CASTEiJ_G0034929.1 mouse_genomes_project X 82964717 82967452 - MGP_CASTEiJ_P0097229 Cxcr3 protein_coding protein_coding MGP_CASTEiJ_T0016219.1 MGP_CASTEiJ_G0014382.1 mouse_genomes_project X 141170798 141171013 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096072.1 MGP_CASTEiJ_G0034623.1 mouse_genomes_project X 21417830 21424516 - MGP_CASTEiJ_P0096072 Rhox12 protein_coding protein_coding MGP_CASTEiJ_T0096073.1 MGP_CASTEiJ_G0034623.1 mouse_genomes_project X 21417931 21421897 - MGP_CASTEiJ_P0096073 Rhox12 protein_coding protein_coding MGP_CASTEiJ_T0096074.1 MGP_CASTEiJ_G0034623.1 mouse_genomes_project X 21419330 21424396 - MGP_CASTEiJ_P0096074 Rhox12 protein_coding protein_coding MGP_CASTEiJ_T0095981.1 MGP_CASTEiJ_G0034582.1 mouse_genomes_project X 15443485 15487669 - MGP_CASTEiJ_P0095981 Zfp182 protein_coding protein_coding MGP_CASTEiJ_T0095982.1 MGP_CASTEiJ_G0034582.1 mouse_genomes_project X 15443489 15487718 - MGP_CASTEiJ_P0095982 Zfp182 protein_coding protein_coding MGP_CASTEiJ_T0095983.1 MGP_CASTEiJ_G0034582.1 mouse_genomes_project X 15444136 15487652 - MGP_CASTEiJ_P0095983 Zfp182 protein_coding protein_coding MGP_CASTEiJ_T0095984.1 MGP_CASTEiJ_G0034582.1 mouse_genomes_project X 15446136 15487970 - Zfp182 protein_coding processed_transcript MGP_CASTEiJ_T0095985.1 MGP_CASTEiJ_G0034582.1 mouse_genomes_project X 15483306 15487709 - Zfp182 protein_coding processed_transcript MGP_CASTEiJ_T0015976.1 MGP_CASTEiJ_G0014139.1 mouse_genomes_project X 92681965 92684717 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097085.1 MGP_CASTEiJ_G0034898.1 mouse_genomes_project X 80182176 80248871 + MGP_CASTEiJ_P0097085 Stard8 protein_coding protein_coding MGP_CASTEiJ_T0097086.1 MGP_CASTEiJ_G0034898.1 mouse_genomes_project X 80225842 80257918 + MGP_CASTEiJ_P0097086 Stard8 protein_coding protein_coding MGP_CASTEiJ_T0097087.1 MGP_CASTEiJ_G0034898.1 mouse_genomes_project X 80227245 80249022 + Stard8 protein_coding processed_transcript MGP_CASTEiJ_T0097088.1 MGP_CASTEiJ_G0034898.1 mouse_genomes_project X 80227308 80257923 + MGP_CASTEiJ_P0097088 Stard8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097089.1 MGP_CASTEiJ_G0034898.1 mouse_genomes_project X 80251803 80253640 + Stard8 protein_coding processed_transcript MGP_CASTEiJ_T0015972.1 MGP_CASTEiJ_G0014135.1 mouse_genomes_project X 91649917 91652325 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016045.1 MGP_CASTEiJ_G0014208.1 mouse_genomes_project X 107723963 107724286 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016068.1 MGP_CASTEiJ_G0014231.1 mouse_genomes_project X 112977843 112978705 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010818.1 MGP_CASTEiJ_G0009006.1 mouse_genomes_project X 34115114 34115193 - Gm25241 miRNA miRNA MGP_CASTEiJ_T0097342.1 MGP_CASTEiJ_G0034965.1 mouse_genomes_project X 87394845 87495499 + MGP_CASTEiJ_P0097342 Atp7a protein_coding protein_coding MGP_CASTEiJ_T0097343.1 MGP_CASTEiJ_G0034965.1 mouse_genomes_project X 87394891 87495504 + MGP_CASTEiJ_P0097343 Atp7a protein_coding protein_coding MGP_CASTEiJ_T0097344.1 MGP_CASTEiJ_G0034965.1 mouse_genomes_project X 87476905 87488880 + Atp7a protein_coding processed_transcript MGP_CASTEiJ_T0097345.1 MGP_CASTEiJ_G0034965.1 mouse_genomes_project X 87485819 87493009 + Atp7a protein_coding retained_intron MGP_CASTEiJ_T0010869.1 MGP_CASTEiJ_G0009057.1 mouse_genomes_project X 75841289 75841399 - Gm44477 miRNA miRNA MGP_CASTEiJ_T0098691.1 MGP_CASTEiJ_G0035622.1 mouse_genomes_project X 50512257 50512378 - n-R5s7 rRNA rRNA MGP_CASTEiJ_T0100187.1 MGP_CASTEiJ_G0037100.1 mouse_genomes_project X 31248853 31249012 + Gm24038 snRNA snRNA MGP_CASTEiJ_T0015691.1 MGP_CASTEiJ_G0013854.1 mouse_genomes_project X 34114881 34115998 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096525.1 MGP_CASTEiJ_G0034776.1 mouse_genomes_project X 55244627 55248382 - MGP_CASTEiJ_P0096525 Pnck protein_coding protein_coding MGP_CASTEiJ_T0096526.1 MGP_CASTEiJ_G0034776.1 mouse_genomes_project X 55244627 55248486 - MGP_CASTEiJ_P0096526 Pnck protein_coding protein_coding MGP_CASTEiJ_T0096527.1 MGP_CASTEiJ_G0034776.1 mouse_genomes_project X 55244628 55248775 - MGP_CASTEiJ_P0096527 Pnck protein_coding protein_coding MGP_CASTEiJ_T0096528.1 MGP_CASTEiJ_G0034776.1 mouse_genomes_project X 55244884 55246465 - Pnck protein_coding retained_intron MGP_CASTEiJ_T0096529.1 MGP_CASTEiJ_G0034776.1 mouse_genomes_project X 55245909 55248091 - MGP_CASTEiJ_P0096529 Pnck protein_coding protein_coding MGP_CASTEiJ_T0096509.1 MGP_CASTEiJ_G0034771.1 mouse_genomes_project X 55011817 55013464 - MGP_CASTEiJ_P0096509 Trex2 protein_coding protein_coding MGP_CASTEiJ_T0095821.1 MGP_CASTEiJ_G0034538.1 mouse_genomes_project X 4412202 4412755 + MGP_CASTEiJ_P0095821 4930557A04Rik protein_coding protein_coding MGP_CASTEiJ_T0095822.1 MGP_CASTEiJ_G0034539.1 mouse_genomes_project X 4444351 4548630 + MGP_CASTEiJ_P0095822 Sytl5 protein_coding protein_coding MGP_CASTEiJ_T0095823.1 MGP_CASTEiJ_G0034539.1 mouse_genomes_project X 4444351 4548630 + MGP_CASTEiJ_P0095823 Sytl5 protein_coding protein_coding MGP_CASTEiJ_T0097622.1 MGP_CASTEiJ_G0035062.1 mouse_genomes_project X 114455960 114460029 - MGP_CASTEiJ_P0097622 Tceal8 protein_coding protein_coding MGP_CASTEiJ_T0097623.1 MGP_CASTEiJ_G0035062.1 mouse_genomes_project X 114457057 114460120 - MGP_CASTEiJ_P0097623 Tceal8 protein_coding protein_coding MGP_CASTEiJ_T0097624.1 MGP_CASTEiJ_G0035062.1 mouse_genomes_project X 114457860 114459994 - MGP_CASTEiJ_P0097624 Tceal8 protein_coding protein_coding MGP_CASTEiJ_T0097625.1 MGP_CASTEiJ_G0035062.1 mouse_genomes_project X 114457964 114459979 - MGP_CASTEiJ_P0097625 Tceal8 protein_coding protein_coding MGP_CASTEiJ_T0016229.1 MGP_CASTEiJ_G0014392.1 mouse_genomes_project X 143815336 143815551 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096910.1 MGP_CASTEiJ_G0034848.1 mouse_genomes_project X 62460437 62485168 + Tmem47 protein_coding processed_transcript MGP_CASTEiJ_T0096911.1 MGP_CASTEiJ_G0034848.1 mouse_genomes_project X 62460444 62486123 + MGP_CASTEiJ_P0096911 Tmem47 protein_coding protein_coding MGP_CASTEiJ_T0096912.1 MGP_CASTEiJ_G0034848.1 mouse_genomes_project X 62460455 62488283 + MGP_CASTEiJ_P0096912 Tmem47 protein_coding protein_coding MGP_CASTEiJ_T0096042.1 MGP_CASTEiJ_G0034606.1 mouse_genomes_project X 20318936 20401291 - MGP_CASTEiJ_P0096042 Sept6 protein_coding protein_coding MGP_CASTEiJ_T0096043.1 MGP_CASTEiJ_G0034606.1 mouse_genomes_project X 20321056 20401291 - MGP_CASTEiJ_P0096043 Sept6 protein_coding protein_coding MGP_CASTEiJ_T0096044.1 MGP_CASTEiJ_G0034606.1 mouse_genomes_project X 20322641 20401291 - MGP_CASTEiJ_P0096044 Sept6 protein_coding protein_coding MGP_CASTEiJ_T0096045.1 MGP_CASTEiJ_G0034606.1 mouse_genomes_project X 20378217 20403410 - MGP_CASTEiJ_P0096045 Sept6 protein_coding protein_coding MGP_CASTEiJ_T0096046.1 MGP_CASTEiJ_G0034606.1 mouse_genomes_project X 20383523 20401126 - Sept6 protein_coding retained_intron MGP_CASTEiJ_T0102628.1 MGP_CASTEiJ_G0039352.1 mouse_genomes_project X 56412259 56413479 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015993.1 MGP_CASTEiJ_G0014156.1 mouse_genomes_project X 95085728 95087713 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015883.1 MGP_CASTEiJ_G0014046.1 mouse_genomes_project X 76218169 76219585 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016028.1 MGP_CASTEiJ_G0014191.1 mouse_genomes_project X 102063490 102064465 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095788.1 MGP_CASTEiJ_G0034527.1 mouse_genomes_project X 2786115 2798713 - MGP_CASTEiJ_P0095788 Porcn protein_coding protein_coding MGP_CASTEiJ_T0095789.1 MGP_CASTEiJ_G0034527.1 mouse_genomes_project X 2786116 2798679 - MGP_CASTEiJ_P0095789 Porcn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095790.1 MGP_CASTEiJ_G0034527.1 mouse_genomes_project X 2786117 2798689 - MGP_CASTEiJ_P0095790 Porcn protein_coding protein_coding MGP_CASTEiJ_T0095791.1 MGP_CASTEiJ_G0034527.1 mouse_genomes_project X 2786117 2798689 - MGP_CASTEiJ_P0095791 Porcn protein_coding protein_coding MGP_CASTEiJ_T0095792.1 MGP_CASTEiJ_G0034527.1 mouse_genomes_project X 2786117 2798689 - MGP_CASTEiJ_P0095792 Porcn protein_coding protein_coding MGP_CASTEiJ_T0095793.1 MGP_CASTEiJ_G0034527.1 mouse_genomes_project X 2786120 2798685 - MGP_CASTEiJ_P0095793 Porcn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095794.1 MGP_CASTEiJ_G0034527.1 mouse_genomes_project X 2795642 2798701 - Porcn protein_coding retained_intron MGP_CASTEiJ_T0015841.1 MGP_CASTEiJ_G0014004.1 mouse_genomes_project X 70123033 70125478 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015884.1 MGP_CASTEiJ_G0014047.1 mouse_genomes_project X 76220506 76221206 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097759.1 MGP_CASTEiJ_G0035107.1 mouse_genomes_project X 119352290 119360526 - MGP_CASTEiJ_P0097759 Psmd10 protein_coding protein_coding MGP_CASTEiJ_T0016194.1 MGP_CASTEiJ_G0014357.1 mouse_genomes_project X 135681979 135682556 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096945.1 MGP_CASTEiJ_G0034858.1 mouse_genomes_project X 68122289 69509554 - MGP_CASTEiJ_P0096945 Il1rapl1 protein_coding protein_coding MGP_CASTEiJ_T0096946.1 MGP_CASTEiJ_G0034858.1 mouse_genomes_project X 68130818 69286183 - MGP_CASTEiJ_P0096946 Il1rapl1 protein_coding protein_coding MGP_CASTEiJ_T0096947.1 MGP_CASTEiJ_G0034858.1 mouse_genomes_project X 68160238 69509554 - MGP_CASTEiJ_P0096947 Il1rapl1 protein_coding protein_coding MGP_CASTEiJ_T0015926.1 MGP_CASTEiJ_G0014089.1 mouse_genomes_project X 84395016 84395706 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096234.1 MGP_CASTEiJ_G0034665.1 mouse_genomes_project X 32458052 32490884 + MGP_CASTEiJ_P0096234 Arhgap36 protein_coding protein_coding MGP_CASTEiJ_T0096235.1 MGP_CASTEiJ_G0034665.1 mouse_genomes_project X 32464558 32494631 + MGP_CASTEiJ_P0096235 Arhgap36 protein_coding protein_coding MGP_CASTEiJ_T0096236.1 MGP_CASTEiJ_G0034665.1 mouse_genomes_project X 32464685 32494629 + MGP_CASTEiJ_P0096236 Arhgap36 protein_coding protein_coding MGP_CASTEiJ_T0096237.1 MGP_CASTEiJ_G0034665.1 mouse_genomes_project X 32479467 32489640 + Arhgap36 protein_coding processed_transcript MGP_CASTEiJ_T0096238.1 MGP_CASTEiJ_G0034665.1 mouse_genomes_project X 32485319 32498762 + MGP_CASTEiJ_P0096238 Arhgap36 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096239.1 MGP_CASTEiJ_G0034665.1 mouse_genomes_project X 32488273 32489845 + Arhgap36 protein_coding processed_transcript MGP_CASTEiJ_T0015902.1 MGP_CASTEiJ_G0014065.1 mouse_genomes_project X 80142177 80142572 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015571.1 MGP_CASTEiJ_G0013734.1 mouse_genomes_project X 5810706 5811345 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016134.1 MGP_CASTEiJ_G0014297.1 mouse_genomes_project X 122866795 122867923 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015725.1 MGP_CASTEiJ_G0013888.1 mouse_genomes_project X 42602855 42603311 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009156.1 MGP_CASTEiJ_G0007367.1 mouse_genomes_project X 62460433 62462933 - Gm26775 lincRNA lincRNA MGP_CASTEiJ_T0010887.1 MGP_CASTEiJ_G0009075.1 mouse_genomes_project X 112905111 112905212 + Mir7093 miRNA miRNA MGP_CASTEiJ_T0096553.1 MGP_CASTEiJ_G0034782.1 mouse_genomes_project X 55373821 55381754 - Idh3g protein_coding retained_intron MGP_CASTEiJ_T0096554.1 MGP_CASTEiJ_G0034782.1 mouse_genomes_project X 55373821 55381754 - MGP_CASTEiJ_P0096554 Idh3g protein_coding protein_coding MGP_CASTEiJ_T0096555.1 MGP_CASTEiJ_G0034782.1 mouse_genomes_project X 55373901 55375752 - Idh3g protein_coding retained_intron MGP_CASTEiJ_T0096556.1 MGP_CASTEiJ_G0034782.1 mouse_genomes_project X 55374528 55375551 - Idh3g protein_coding retained_intron MGP_CASTEiJ_T0096557.1 MGP_CASTEiJ_G0034782.1 mouse_genomes_project X 55374894 55375667 - Idh3g protein_coding retained_intron MGP_CASTEiJ_T0096558.1 MGP_CASTEiJ_G0034782.1 mouse_genomes_project X 55374932 55381479 - Idh3g protein_coding processed_transcript MGP_CASTEiJ_T0096559.1 MGP_CASTEiJ_G0034782.1 mouse_genomes_project X 55375279 55376557 - Idh3g protein_coding retained_intron MGP_CASTEiJ_T0096560.1 MGP_CASTEiJ_G0034782.1 mouse_genomes_project X 55375442 55377069 - Idh3g protein_coding retained_intron MGP_CASTEiJ_T0096561.1 MGP_CASTEiJ_G0034782.1 mouse_genomes_project X 55375833 55377234 - Idh3g protein_coding processed_transcript MGP_CASTEiJ_T0096058.1 MGP_CASTEiJ_G0034613.1 mouse_genomes_project X 20612045 20613268 + MGP_CASTEiJ_P0096058 Rnf113a1 protein_coding protein_coding MGP_CASTEiJ_T0097389.1 MGP_CASTEiJ_G0034980.1 mouse_genomes_project X 89179659 89264133 + MGP_CASTEiJ_P0097389 Fam46d protein_coding protein_coding MGP_CASTEiJ_T0097390.1 MGP_CASTEiJ_G0034980.1 mouse_genomes_project X 89203611 89261783 + MGP_CASTEiJ_P0097390 Fam46d protein_coding protein_coding MGP_CASTEiJ_T0097391.1 MGP_CASTEiJ_G0034980.1 mouse_genomes_project X 89203706 89264133 + MGP_CASTEiJ_P0097391 Fam46d protein_coding protein_coding MGP_CASTEiJ_T0097392.1 MGP_CASTEiJ_G0034980.1 mouse_genomes_project X 89203706 89261624 + MGP_CASTEiJ_P0097392 Fam46d protein_coding protein_coding MGP_CASTEiJ_T0096057.1 MGP_CASTEiJ_G0034612.1 mouse_genomes_project X 20608390 20611964 - MGP_CASTEiJ_P0096057 Ndufa1 protein_coding protein_coding MGP_CASTEiJ_T0016020.1 MGP_CASTEiJ_G0014183.1 mouse_genomes_project X 100297845 100298583 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095608.1 MGP_CASTEiJ_G0034491.1 mouse_genomes_project X 1675536 1711113 - MGP_CASTEiJ_P0095608 Clcn5 protein_coding protein_coding MGP_CASTEiJ_T0095609.1 MGP_CASTEiJ_G0034491.1 mouse_genomes_project X 1681187 1850046 - MGP_CASTEiJ_P0095609 Clcn5 protein_coding protein_coding MGP_CASTEiJ_T0095610.1 MGP_CASTEiJ_G0034491.1 mouse_genomes_project X 1681895 1711072 - Clcn5 protein_coding retained_intron MGP_CASTEiJ_T0095611.1 MGP_CASTEiJ_G0034491.1 mouse_genomes_project X 1682844 1739585 - MGP_CASTEiJ_P0095611 Clcn5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095612.1 MGP_CASTEiJ_G0034491.1 mouse_genomes_project X 1692920 1850171 - MGP_CASTEiJ_P0095612 Clcn5 protein_coding protein_coding MGP_CASTEiJ_T0095613.1 MGP_CASTEiJ_G0034491.1 mouse_genomes_project X 1736398 1849983 - Clcn5 protein_coding processed_transcript MGP_CASTEiJ_T0016188.1 MGP_CASTEiJ_G0014351.1 mouse_genomes_project X 134961089 134961556 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102639.1 MGP_CASTEiJ_G0039363.1 mouse_genomes_project X 70657136 70658191 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0097346.1 MGP_CASTEiJ_G0034966.1 mouse_genomes_project X 87513049 87513467 + Tlr13 protein_coding retained_intron MGP_CASTEiJ_T0097347.1 MGP_CASTEiJ_G0034966.1 mouse_genomes_project X 87513074 87531392 + MGP_CASTEiJ_P0097347 Tlr13 protein_coding protein_coding MGP_CASTEiJ_T0015886.1 MGP_CASTEiJ_G0014049.1 mouse_genomes_project X 76366457 76367702 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095969.1 MGP_CASTEiJ_G0034578.1 mouse_genomes_project X 15281636 15286201 + MGP_CASTEiJ_P0095969 Timp1 protein_coding protein_coding MGP_CASTEiJ_T0095970.1 MGP_CASTEiJ_G0034578.1 mouse_genomes_project X 15281691 15286203 + MGP_CASTEiJ_P0095970 Timp1 protein_coding protein_coding MGP_CASTEiJ_T0097738.1 MGP_CASTEiJ_G0035100.1 mouse_genomes_project X 118417540 118461860 + MGP_CASTEiJ_P0097738 Pih1h3b protein_coding protein_coding MGP_CASTEiJ_T0005467.1 MGP_CASTEiJ_G0004615.1 mouse_genomes_project X 135111894 135149597 - Gm15169 antisense antisense MGP_CASTEiJ_T0005468.1 MGP_CASTEiJ_G0004615.1 mouse_genomes_project X 135129495 135149591 - Gm15169 antisense antisense MGP_CASTEiJ_T0005422.1 MGP_CASTEiJ_G0004582.1 mouse_genomes_project X 2198749 2203632 - Gm14703 antisense antisense MGP_CASTEiJ_T0015759.1 MGP_CASTEiJ_G0013922.1 mouse_genomes_project X 49305485 49306048 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015777.1 MGP_CASTEiJ_G0013940.1 mouse_genomes_project X 54222200 54222543 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098286.1 MGP_CASTEiJ_G0035233.1 mouse_genomes_project X 146172820 146693456 + MGP_CASTEiJ_P0098286 Arhgap6 protein_coding protein_coding MGP_CASTEiJ_T0098287.1 MGP_CASTEiJ_G0035233.1 mouse_genomes_project X 146427996 146647880 + Arhgap6 protein_coding retained_intron MGP_CASTEiJ_T0098288.1 MGP_CASTEiJ_G0035233.1 mouse_genomes_project X 146427996 146655347 + MGP_CASTEiJ_P0098288 Arhgap6 protein_coding protein_coding MGP_CASTEiJ_T0098289.1 MGP_CASTEiJ_G0035233.1 mouse_genomes_project X 146427996 146693456 + MGP_CASTEiJ_P0098289 Arhgap6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098290.1 MGP_CASTEiJ_G0035233.1 mouse_genomes_project X 146427996 146650432 + MGP_CASTEiJ_P0098290 Arhgap6 protein_coding protein_coding MGP_CASTEiJ_T0098291.1 MGP_CASTEiJ_G0035233.1 mouse_genomes_project X 146427996 146693456 + MGP_CASTEiJ_P0098291 Arhgap6 protein_coding protein_coding MGP_CASTEiJ_T0098292.1 MGP_CASTEiJ_G0035233.1 mouse_genomes_project X 146509368 146693456 + MGP_CASTEiJ_P0098292 Arhgap6 protein_coding protein_coding MGP_CASTEiJ_T0098298.1 MGP_CASTEiJ_G0035233.1 mouse_genomes_project X 146608742 146687634 + MGP_CASTEiJ_P0098298 Arhgap6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0010819.1 MGP_CASTEiJ_G0009007.1 mouse_genomes_project X 35274608 35274669 - Mir6384 miRNA miRNA MGP_CASTEiJ_T0095652.1 MGP_CASTEiJ_G0034500.1 mouse_genomes_project X 2216343 2220328 - MGP_CASTEiJ_P0095652 protein_coding protein_coding MGP_CASTEiJ_T0098064.1 MGP_CASTEiJ_G0035181.1 mouse_genomes_project X 136533396 136694734 + MGP_CASTEiJ_P0098064 Rps6ka3 protein_coding protein_coding MGP_CASTEiJ_T0098065.1 MGP_CASTEiJ_G0035181.1 mouse_genomes_project X 136580522 136635577 + MGP_CASTEiJ_P0098065 Rps6ka3 protein_coding protein_coding MGP_CASTEiJ_T0098066.1 MGP_CASTEiJ_G0035181.1 mouse_genomes_project X 136580828 136698478 + MGP_CASTEiJ_P0098066 Rps6ka3 protein_coding protein_coding MGP_CASTEiJ_T0098067.1 MGP_CASTEiJ_G0035181.1 mouse_genomes_project X 136580895 136653632 + MGP_CASTEiJ_P0098067 Rps6ka3 protein_coding protein_coding MGP_CASTEiJ_T0098068.1 MGP_CASTEiJ_G0035181.1 mouse_genomes_project X 136581090 136653722 + MGP_CASTEiJ_P0098068 Rps6ka3 protein_coding protein_coding MGP_CASTEiJ_T0098069.1 MGP_CASTEiJ_G0035181.1 mouse_genomes_project X 136601688 136652142 + MGP_CASTEiJ_P0098069 Rps6ka3 protein_coding protein_coding MGP_CASTEiJ_T0098070.1 MGP_CASTEiJ_G0035181.1 mouse_genomes_project X 136626059 136656135 + MGP_CASTEiJ_P0098070 Rps6ka3 protein_coding protein_coding MGP_CASTEiJ_T0098071.1 MGP_CASTEiJ_G0035181.1 mouse_genomes_project X 136692558 136693729 + Rps6ka3 protein_coding processed_transcript MGP_CASTEiJ_T0098072.1 MGP_CASTEiJ_G0035181.1 mouse_genomes_project X 136692643 136693964 + Rps6ka3 protein_coding retained_intron MGP_CASTEiJ_T0096296.1 MGP_CASTEiJ_G0034692.1 mouse_genomes_project X 36514250 36527605 + MGP_CASTEiJ_P0096296 protein_coding protein_coding MGP_CASTEiJ_T0015920.1 MGP_CASTEiJ_G0014083.1 mouse_genomes_project X 83939875 83941280 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096848.1 MGP_CASTEiJ_G0034823.1 mouse_genomes_project X 57078906 57090619 - MGP_CASTEiJ_P0096848 Cmc4 protein_coding protein_coding MGP_CASTEiJ_T0096849.1 MGP_CASTEiJ_G0034823.1 mouse_genomes_project X 57079086 57090638 - MGP_CASTEiJ_P0096849 Cmc4 protein_coding protein_coding MGP_CASTEiJ_T0096850.1 MGP_CASTEiJ_G0034823.1 mouse_genomes_project X 57079130 57083961 - MGP_CASTEiJ_P0096850 Cmc4 protein_coding protein_coding MGP_CASTEiJ_T0010888.1 MGP_CASTEiJ_G0009076.1 mouse_genomes_project X 113993618 113993672 + Mir7646 miRNA miRNA MGP_CASTEiJ_T0015942.1 MGP_CASTEiJ_G0014105.1 mouse_genomes_project X 85082163 85082881 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015624.1 MGP_CASTEiJ_G0013787.1 mouse_genomes_project X 16728021 16728496 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011455.1 MGP_CASTEiJ_G0009643.1 mouse_genomes_project X 146683947 146684116 + Gm27980 misc_RNA misc_RNA MGP_CASTEiJ_T0009140.1 MGP_CASTEiJ_G0007355.1 mouse_genomes_project X 20213663 20216043 - Mdrl lincRNA lincRNA MGP_CASTEiJ_T0015915.1 MGP_CASTEiJ_G0014078.1 mouse_genomes_project X 83003475 83003998 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016230.1 MGP_CASTEiJ_G0014393.1 mouse_genomes_project X 144291324 144291771 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096769.1 MGP_CASTEiJ_G0034807.1 mouse_genomes_project X 56025777 56029785 - MGP_CASTEiJ_P0096769 Slc10a3 protein_coding protein_coding MGP_CASTEiJ_T0096770.1 MGP_CASTEiJ_G0034807.1 mouse_genomes_project X 56025779 56027568 - MGP_CASTEiJ_P0096770 Slc10a3 protein_coding protein_coding MGP_CASTEiJ_T0096771.1 MGP_CASTEiJ_G0034807.1 mouse_genomes_project X 56025779 56029844 - MGP_CASTEiJ_P0096771 Slc10a3 protein_coding protein_coding MGP_CASTEiJ_T0096772.1 MGP_CASTEiJ_G0034807.1 mouse_genomes_project X 56025779 56029888 - MGP_CASTEiJ_P0096772 Slc10a3 protein_coding protein_coding MGP_CASTEiJ_T0097445.1 MGP_CASTEiJ_G0035001.1 mouse_genomes_project X 94348877 94895074 + MGP_CASTEiJ_P0097445 Dach2 protein_coding protein_coding MGP_CASTEiJ_T0097446.1 MGP_CASTEiJ_G0035001.1 mouse_genomes_project X 94348889 94890595 + MGP_CASTEiJ_P0097446 Dach2 protein_coding protein_coding MGP_CASTEiJ_T0097447.1 MGP_CASTEiJ_G0035001.1 mouse_genomes_project X 94348943 94894266 + MGP_CASTEiJ_P0097447 Dach2 protein_coding protein_coding MGP_CASTEiJ_T0097448.1 MGP_CASTEiJ_G0035001.1 mouse_genomes_project X 94349619 94809494 + Dach2 protein_coding retained_intron MGP_CASTEiJ_T0097449.1 MGP_CASTEiJ_G0035001.1 mouse_genomes_project X 94349624 94892944 + MGP_CASTEiJ_P0097449 Dach2 protein_coding protein_coding MGP_CASTEiJ_T0097450.1 MGP_CASTEiJ_G0035001.1 mouse_genomes_project X 94349624 94894581 + MGP_CASTEiJ_P0097450 Dach2 protein_coding protein_coding MGP_CASTEiJ_T0097451.1 MGP_CASTEiJ_G0035001.1 mouse_genomes_project X 94350001 94600931 + Dach2 protein_coding processed_transcript MGP_CASTEiJ_T0097452.1 MGP_CASTEiJ_G0035001.1 mouse_genomes_project X 94777653 94892944 + Dach2 protein_coding processed_transcript MGP_CASTEiJ_T0101479.1 MGP_CASTEiJ_G0038392.1 mouse_genomes_project X 147072553 147072672 - Gm25651 snoRNA snoRNA MGP_CASTEiJ_T0015833.1 MGP_CASTEiJ_G0013996.1 mouse_genomes_project X 68182767 68183077 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101679.1 MGP_CASTEiJ_G0038508.1 mouse_genomes_project X 4989366 4991303 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101680.1 MGP_CASTEiJ_G0038508.1 mouse_genomes_project X 4990707 4991198 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0096272.1 MGP_CASTEiJ_G0034679.1 mouse_genomes_project X 34944498 35062772 - MGP_CASTEiJ_P0096272 Gpc4 protein_coding protein_coding MGP_CASTEiJ_T0097369.1 MGP_CASTEiJ_G0034975.1 mouse_genomes_project X 88547284 88571278 + MGP_CASTEiJ_P0097369 A630033H20Rik protein_coding protein_coding MGP_CASTEiJ_T0097370.1 MGP_CASTEiJ_G0034975.1 mouse_genomes_project X 88547284 88573539 + MGP_CASTEiJ_P0097370 A630033H20Rik protein_coding protein_coding MGP_CASTEiJ_T0097371.1 MGP_CASTEiJ_G0034975.1 mouse_genomes_project X 88547811 88571304 + MGP_CASTEiJ_P0097371 A630033H20Rik protein_coding protein_coding MGP_CASTEiJ_T0097372.1 MGP_CASTEiJ_G0034975.1 mouse_genomes_project X 88547811 88573539 + MGP_CASTEiJ_P0097372 A630033H20Rik protein_coding protein_coding MGP_CASTEiJ_T0097373.1 MGP_CASTEiJ_G0034975.1 mouse_genomes_project X 88547954 88571024 + MGP_CASTEiJ_P0097373 A630033H20Rik protein_coding protein_coding MGP_CASTEiJ_T0097374.1 MGP_CASTEiJ_G0034975.1 mouse_genomes_project X 88547971 88573535 + MGP_CASTEiJ_P0097374 A630033H20Rik protein_coding protein_coding MGP_CASTEiJ_T0098073.1 MGP_CASTEiJ_G0035182.1 mouse_genomes_project X 136702372 136706739 + Eif1ax protein_coding retained_intron MGP_CASTEiJ_T0098074.1 MGP_CASTEiJ_G0035182.1 mouse_genomes_project X 136702372 136723654 + MGP_CASTEiJ_P0098074 Eif1ax protein_coding protein_coding MGP_CASTEiJ_T0015734.1 MGP_CASTEiJ_G0013897.1 mouse_genomes_project X 43805959 43807189 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096747.1 MGP_CASTEiJ_G0034803.1 mouse_genomes_project X 55970039 55976926 + MGP_CASTEiJ_P0096747 Fam50a protein_coding protein_coding MGP_CASTEiJ_T0096748.1 MGP_CASTEiJ_G0034803.1 mouse_genomes_project X 55970132 55976911 + Fam50a protein_coding retained_intron MGP_CASTEiJ_T0096749.1 MGP_CASTEiJ_G0034803.1 mouse_genomes_project X 55974232 55974730 + Fam50a protein_coding retained_intron MGP_CASTEiJ_T0015748.1 MGP_CASTEiJ_G0013911.1 mouse_genomes_project X 46635533 46636437 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096061.1 MGP_CASTEiJ_G0034616.1 mouse_genomes_project X 21073510 21077544 + MGP_CASTEiJ_P0096061 Rhox5 protein_coding protein_coding MGP_CASTEiJ_T0096062.1 MGP_CASTEiJ_G0034616.1 mouse_genomes_project X 21073519 21077432 + MGP_CASTEiJ_P0096062 Rhox5 protein_coding protein_coding MGP_CASTEiJ_T0010843.1 MGP_CASTEiJ_G0009031.1 mouse_genomes_project X 48422010 48422081 - Mir741 miRNA miRNA MGP_CASTEiJ_T0100183.1 MGP_CASTEiJ_G0037096.1 mouse_genomes_project X 20474231 20474340 - Gm26099 snRNA snRNA MGP_CASTEiJ_T0016171.1 MGP_CASTEiJ_G0014334.1 mouse_genomes_project X 132505147 132506157 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015945.1 MGP_CASTEiJ_G0014108.1 mouse_genomes_project X 85327543 85328943 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098253.1 MGP_CASTEiJ_G0035223.1 mouse_genomes_project X 143765541 143778758 + MGP_CASTEiJ_P0098253 Trappc2 protein_coding protein_coding MGP_CASTEiJ_T0098254.1 MGP_CASTEiJ_G0035223.1 mouse_genomes_project X 143765752 143777590 + Trappc2 protein_coding retained_intron MGP_CASTEiJ_T0098255.1 MGP_CASTEiJ_G0035223.1 mouse_genomes_project X 143765752 143778756 + MGP_CASTEiJ_P0098255 Trappc2 protein_coding protein_coding MGP_CASTEiJ_T0098256.1 MGP_CASTEiJ_G0035223.1 mouse_genomes_project X 143770310 143778758 + MGP_CASTEiJ_P0098256 Trappc2 protein_coding protein_coding MGP_CASTEiJ_T0015975.1 MGP_CASTEiJ_G0014138.1 mouse_genomes_project X 92681964 92684717 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097214.1 MGP_CASTEiJ_G0034926.1 mouse_genomes_project X 82673086 82677540 + MGP_CASTEiJ_P0097214 Itgb1bp2 protein_coding protein_coding MGP_CASTEiJ_T0097215.1 MGP_CASTEiJ_G0034926.1 mouse_genomes_project X 82676109 82677143 + Itgb1bp2 protein_coding retained_intron MGP_CASTEiJ_T0016051.1 MGP_CASTEiJ_G0014214.1 mouse_genomes_project X 109343503 109344813 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015630.1 MGP_CASTEiJ_G0013793.1 mouse_genomes_project X 19592613 19592988 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015842.1 MGP_CASTEiJ_G0014005.1 mouse_genomes_project X 70129633 70129825 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015882.1 MGP_CASTEiJ_G0014045.1 mouse_genomes_project X 76114775 76116393 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016185.1 MGP_CASTEiJ_G0014348.1 mouse_genomes_project X 134884045 134884742 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005448.1 MGP_CASTEiJ_G0004601.1 mouse_genomes_project X 57242039 57243857 + Gm15063 antisense antisense MGP_CASTEiJ_T0015610.1 MGP_CASTEiJ_G0013773.1 mouse_genomes_project X 14221294 14221629 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005436.1 MGP_CASTEiJ_G0004591.1 mouse_genomes_project X 35483427 35526366 + A630012P03Rik antisense antisense MGP_CASTEiJ_T0005437.1 MGP_CASTEiJ_G0004591.1 mouse_genomes_project X 35483427 35526366 + A630012P03Rik antisense antisense MGP_CASTEiJ_T0098257.1 MGP_CASTEiJ_G0035224.1 mouse_genomes_project X 143782871 143808985 - MGP_CASTEiJ_P0098257 Rab9 protein_coding protein_coding MGP_CASTEiJ_T0016236.1 MGP_CASTEiJ_G0014399.1 mouse_genomes_project X 145750721 145751116 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098233.1 MGP_CASTEiJ_G0035219.1 mouse_genomes_project X 142524639 142724945 - MGP_CASTEiJ_P0098233 Glra2 protein_coding protein_coding MGP_CASTEiJ_T0100194.1 MGP_CASTEiJ_G0037107.1 mouse_genomes_project X 40882375 40882469 + Gm26487 snRNA snRNA MGP_CASTEiJ_T0016234.1 MGP_CASTEiJ_G0014397.1 mouse_genomes_project X 145369714 145370439 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097090.1 MGP_CASTEiJ_G0034899.1 mouse_genomes_project X 80328042 80340882 + MGP_CASTEiJ_P0097090 Efnb1 protein_coding protein_coding MGP_CASTEiJ_T0097091.1 MGP_CASTEiJ_G0034899.1 mouse_genomes_project X 80330032 80339126 + Efnb1 protein_coding processed_transcript MGP_CASTEiJ_T0016017.1 MGP_CASTEiJ_G0014180.1 mouse_genomes_project X 99067016 99067367 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015925.1 MGP_CASTEiJ_G0014088.1 mouse_genomes_project X 84379260 84380568 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016224.1 MGP_CASTEiJ_G0014387.1 mouse_genomes_project X 143385123 143387485 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102619.1 MGP_CASTEiJ_G0039343.1 mouse_genomes_project X 21715233 21717471 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0098034.1 MGP_CASTEiJ_G0035173.1 mouse_genomes_project X 134499409 134752780 - MGP_CASTEiJ_P0098034 Phex protein_coding protein_coding MGP_CASTEiJ_T0098035.1 MGP_CASTEiJ_G0035173.1 mouse_genomes_project X 134560635 134753336 - MGP_CASTEiJ_P0098035 Phex protein_coding protein_coding MGP_CASTEiJ_T0016064.1 MGP_CASTEiJ_G0014227.1 mouse_genomes_project X 112822149 112822507 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010867.1 MGP_CASTEiJ_G0009055.1 mouse_genomes_project X 66930622 66930699 + Gm44378 miRNA miRNA MGP_CASTEiJ_T0015908.1 MGP_CASTEiJ_G0014071.1 mouse_genomes_project X 81527089 81528244 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098163.1 MGP_CASTEiJ_G0035200.1 mouse_genomes_project X 140228373 140263258 - MGP_CASTEiJ_P0098163 Syap1 protein_coding protein_coding MGP_CASTEiJ_T0098164.1 MGP_CASTEiJ_G0035200.1 mouse_genomes_project X 140229225 140234757 - Syap1 protein_coding retained_intron MGP_CASTEiJ_T0100234.1 MGP_CASTEiJ_G0037147.1 mouse_genomes_project X 132044778 132044886 + Gm22359 snRNA snRNA MGP_CASTEiJ_T0096060.1 MGP_CASTEiJ_G0034615.1 mouse_genomes_project X 20637738 20647440 - MGP_CASTEiJ_P0096060 Rhox1 protein_coding protein_coding MGP_CASTEiJ_T0101685.1 MGP_CASTEiJ_G0038511.1 mouse_genomes_project X 16872126 16872889 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101686.1 MGP_CASTEiJ_G0038511.1 mouse_genomes_project X 16872223 16872832 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0096284.1 MGP_CASTEiJ_G0034685.1 mouse_genomes_project X 36187378 36213744 - MGP_CASTEiJ_P0096284 Fam122b protein_coding protein_coding MGP_CASTEiJ_T0096285.1 MGP_CASTEiJ_G0034685.1 mouse_genomes_project X 36187388 36212959 - MGP_CASTEiJ_P0096285 Fam122b protein_coding protein_coding MGP_CASTEiJ_T0096286.1 MGP_CASTEiJ_G0034685.1 mouse_genomes_project X 36187709 36213737 - MGP_CASTEiJ_P0096286 Fam122b protein_coding protein_coding MGP_CASTEiJ_T0096287.1 MGP_CASTEiJ_G0034685.1 mouse_genomes_project X 36188825 36213744 - Fam122b protein_coding processed_transcript MGP_CASTEiJ_T0015567.1 MGP_CASTEiJ_G0013730.1 mouse_genomes_project X 3450194 3451655 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016032.1 MGP_CASTEiJ_G0014195.1 mouse_genomes_project X 102968120 102970084 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010901.1 MGP_CASTEiJ_G0009089.1 mouse_genomes_project X 125420311 125420423 + Mir448 miRNA miRNA MGP_CASTEiJ_T0097459.1 MGP_CASTEiJ_G0035006.1 mouse_genomes_project X 97632436 97632784 + MGP_CASTEiJ_P0097459 H2afb2 protein_coding protein_coding MGP_CASTEiJ_T0015954.1 MGP_CASTEiJ_G0014117.1 mouse_genomes_project X 87545067 87545680 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016029.1 MGP_CASTEiJ_G0014192.1 mouse_genomes_project X 102286726 102287373 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016128.1 MGP_CASTEiJ_G0014291.1 mouse_genomes_project X 122535350 122535660 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015646.1 MGP_CASTEiJ_G0013809.1 mouse_genomes_project X 23103533 23104103 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005439.1 MGP_CASTEiJ_G0004593.1 mouse_genomes_project X 38946648 38950343 + Gm14718 antisense antisense MGP_CASTEiJ_T0095645.1 MGP_CASTEiJ_G0034498.1 mouse_genomes_project X 2203633 2216304 + MGP_CASTEiJ_P0095645 Prickle3 protein_coding protein_coding MGP_CASTEiJ_T0095646.1 MGP_CASTEiJ_G0034498.1 mouse_genomes_project X 2203849 2207470 + Prickle3 protein_coding retained_intron MGP_CASTEiJ_T0095647.1 MGP_CASTEiJ_G0034498.1 mouse_genomes_project X 2204882 2216557 + MGP_CASTEiJ_P0095647 Prickle3 protein_coding protein_coding MGP_CASTEiJ_T0095648.1 MGP_CASTEiJ_G0034498.1 mouse_genomes_project X 2211132 2216304 + Prickle3 protein_coding retained_intron MGP_CASTEiJ_T0095649.1 MGP_CASTEiJ_G0034498.1 mouse_genomes_project X 2214467 2215507 + Prickle3 protein_coding retained_intron MGP_CASTEiJ_T0098100.1 MGP_CASTEiJ_G0035187.1 mouse_genomes_project X 137472417 137488525 - MGP_CASTEiJ_P0098100 Pdha1 protein_coding protein_coding MGP_CASTEiJ_T0098101.1 MGP_CASTEiJ_G0035187.1 mouse_genomes_project X 137477521 137479193 - Pdha1 protein_coding retained_intron MGP_CASTEiJ_T0098102.1 MGP_CASTEiJ_G0035187.1 mouse_genomes_project X 137479515 137488421 - Pdha1 protein_coding retained_intron MGP_CASTEiJ_T0098103.1 MGP_CASTEiJ_G0035187.1 mouse_genomes_project X 137487008 137488468 - Pdha1 protein_coding processed_transcript MGP_CASTEiJ_T0016001.1 MGP_CASTEiJ_G0014164.1 mouse_genomes_project X 96399795 96400784 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097829.1 MGP_CASTEiJ_G0035129.1 mouse_genomes_project X 123709066 123770975 - MGP_CASTEiJ_P0097829 Amot protein_coding protein_coding MGP_CASTEiJ_T0097830.1 MGP_CASTEiJ_G0035129.1 mouse_genomes_project X 123709105 123771028 - MGP_CASTEiJ_P0097830 Amot protein_coding protein_coding MGP_CASTEiJ_T0097831.1 MGP_CASTEiJ_G0035129.1 mouse_genomes_project X 123714500 123753073 - MGP_CASTEiJ_P0097831 Amot protein_coding protein_coding MGP_CASTEiJ_T0097832.1 MGP_CASTEiJ_G0035129.1 mouse_genomes_project X 123720146 123745166 - MGP_CASTEiJ_P0097832 Amot protein_coding unknown_likely_coding MGP_CASTEiJ_T0097833.1 MGP_CASTEiJ_G0035129.1 mouse_genomes_project X 123722425 123724653 - Amot protein_coding retained_intron MGP_CASTEiJ_T0097834.1 MGP_CASTEiJ_G0035129.1 mouse_genomes_project X 123740707 123771012 - MGP_CASTEiJ_P0097834 Amot protein_coding protein_coding MGP_CASTEiJ_T0016127.1 MGP_CASTEiJ_G0014290.1 mouse_genomes_project X 122531181 122532004 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016210.1 MGP_CASTEiJ_G0014373.1 mouse_genomes_project X 139940398 139940852 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097348.1 MGP_CASTEiJ_G0034967.1 mouse_genomes_project X 87556069 87572397 + MGP_CASTEiJ_P0097348 Pgk1-rs7 protein_coding protein_coding MGP_CASTEiJ_T0097349.1 MGP_CASTEiJ_G0034967.1 mouse_genomes_project X 87556120 87574028 + MGP_CASTEiJ_P0097349 Pgk1-rs7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097350.1 MGP_CASTEiJ_G0034967.1 mouse_genomes_project X 87560610 87563767 + Pgk1-rs7 protein_coding retained_intron MGP_CASTEiJ_T0096498.1 MGP_CASTEiJ_G0034764.1 mouse_genomes_project X 54541165 54547636 - MGP_CASTEiJ_P0096498 Pnma5 protein_coding protein_coding MGP_CASTEiJ_T0096499.1 MGP_CASTEiJ_G0034764.1 mouse_genomes_project X 54541172 54546647 - MGP_CASTEiJ_P0096499 Pnma5 protein_coding protein_coding MGP_CASTEiJ_T0095780.1 MGP_CASTEiJ_G0034525.1 mouse_genomes_project X 2745283 2767506 - MGP_CASTEiJ_P0095780 Tbc1d25 protein_coding protein_coding MGP_CASTEiJ_T0095781.1 MGP_CASTEiJ_G0034525.1 mouse_genomes_project X 2745283 2767506 - MGP_CASTEiJ_P0095781 Tbc1d25 protein_coding protein_coding MGP_CASTEiJ_T0095782.1 MGP_CASTEiJ_G0034525.1 mouse_genomes_project X 2745294 2767283 - Tbc1d25 protein_coding retained_intron MGP_CASTEiJ_T0095783.1 MGP_CASTEiJ_G0034525.1 mouse_genomes_project X 2745516 2767158 - MGP_CASTEiJ_P0095783 Tbc1d25 protein_coding protein_coding MGP_CASTEiJ_T0101463.1 MGP_CASTEiJ_G0038376.1 mouse_genomes_project X 115419957 115420076 + Gm23679 snoRNA snoRNA MGP_CASTEiJ_T0095625.1 MGP_CASTEiJ_G0034495.1 mouse_genomes_project X 2140876 2152557 - MGP_CASTEiJ_P0095625 Ccdc22 protein_coding protein_coding MGP_CASTEiJ_T0095626.1 MGP_CASTEiJ_G0034495.1 mouse_genomes_project X 2140877 2144358 - Ccdc22 protein_coding retained_intron MGP_CASTEiJ_T0096302.1 MGP_CASTEiJ_G0034698.1 mouse_genomes_project X 37481110 37509305 + MGP_CASTEiJ_P0096302 Gm773 protein_coding protein_coding MGP_CASTEiJ_T0096386.1 MGP_CASTEiJ_G0034724.1 mouse_genomes_project X 42908614 42911259 - MGP_CASTEiJ_P0096386 Cdr1 protein_coding protein_coding MGP_CASTEiJ_T0011453.1 MGP_CASTEiJ_G0009641.1 mouse_genomes_project X 140059232 140059548 + Gm25557 misc_RNA misc_RNA MGP_CASTEiJ_T0097848.1 MGP_CASTEiJ_G0035133.1 mouse_genomes_project X 127781953 127826011 - MGP_CASTEiJ_P0097848 Tmem29 protein_coding protein_coding MGP_CASTEiJ_T0097849.1 MGP_CASTEiJ_G0035133.1 mouse_genomes_project X 127781953 127845877 - MGP_CASTEiJ_P0097849 Tmem29 protein_coding protein_coding MGP_CASTEiJ_T0097850.1 MGP_CASTEiJ_G0035133.1 mouse_genomes_project X 127782975 127845877 - Tmem29 protein_coding processed_transcript MGP_CASTEiJ_T0097851.1 MGP_CASTEiJ_G0035133.1 mouse_genomes_project X 127792729 127845881 - Tmem29 protein_coding processed_transcript MGP_CASTEiJ_T0097852.1 MGP_CASTEiJ_G0035133.1 mouse_genomes_project X 127792729 127825980 - Tmem29 protein_coding processed_transcript MGP_CASTEiJ_T0097853.1 MGP_CASTEiJ_G0035133.1 mouse_genomes_project X 127792735 127825779 - MGP_CASTEiJ_P0097853 Tmem29 protein_coding protein_coding MGP_CASTEiJ_T0097854.1 MGP_CASTEiJ_G0035133.1 mouse_genomes_project X 127793071 127845881 - Tmem29 protein_coding processed_transcript MGP_CASTEiJ_T0097855.1 MGP_CASTEiJ_G0035133.1 mouse_genomes_project X 127793257 127820405 - Tmem29 protein_coding processed_transcript MGP_CASTEiJ_T0097856.1 MGP_CASTEiJ_G0035133.1 mouse_genomes_project X 127793322 127825779 - Tmem29 protein_coding processed_transcript MGP_CASTEiJ_T0097857.1 MGP_CASTEiJ_G0035133.1 mouse_genomes_project X 127801199 127845881 - Tmem29 protein_coding retained_intron MGP_CASTEiJ_T0097858.1 MGP_CASTEiJ_G0035133.1 mouse_genomes_project X 127822031 127826037 - Tmem29 protein_coding processed_transcript MGP_CASTEiJ_T0097859.1 MGP_CASTEiJ_G0035133.1 mouse_genomes_project X 127822836 127825663 - Tmem29 protein_coding processed_transcript MGP_CASTEiJ_T0009161.1 MGP_CASTEiJ_G0007371.1 mouse_genomes_project X 77006457 77007077 + 1700010D01Rik lincRNA lincRNA MGP_CASTEiJ_T0096270.1 MGP_CASTEiJ_G0034678.1 mouse_genomes_project X 34867026 34871106 - MGP_CASTEiJ_P0096270 1700080O16Rik protein_coding protein_coding MGP_CASTEiJ_T0096271.1 MGP_CASTEiJ_G0034678.1 mouse_genomes_project X 34867223 34869379 - MGP_CASTEiJ_P0096271 1700080O16Rik protein_coding protein_coding MGP_CASTEiJ_T0015944.1 MGP_CASTEiJ_G0014107.1 mouse_genomes_project X 85290448 85291453 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101478.1 MGP_CASTEiJ_G0038391.1 mouse_genomes_project X 144722912 144723030 - Gm26368 snoRNA snoRNA MGP_CASTEiJ_T0097006.1 MGP_CASTEiJ_G0034877.1 mouse_genomes_project X 76079225 76081716 + MGP_CASTEiJ_P0097006 Gspt2 protein_coding protein_coding MGP_CASTEiJ_T0097007.1 MGP_CASTEiJ_G0034877.1 mouse_genomes_project X 76079232 76086458 + MGP_CASTEiJ_P0097007 Gspt2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097688.1 MGP_CASTEiJ_G0035086.1 mouse_genomes_project X 117396160 117402129 - MGP_CASTEiJ_P0097688 Serpina7 protein_coding protein_coding MGP_CASTEiJ_T0097689.1 MGP_CASTEiJ_G0035086.1 mouse_genomes_project X 117396160 117402127 - MGP_CASTEiJ_P0097689 Serpina7 protein_coding protein_coding MGP_CASTEiJ_T0097690.1 MGP_CASTEiJ_G0035086.1 mouse_genomes_project X 117400397 117402148 - MGP_CASTEiJ_P0097690 Serpina7 protein_coding protein_coding MGP_CASTEiJ_T0096885.1 MGP_CASTEiJ_G0034839.1 mouse_genomes_project X 59420513 59438204 - MGP_CASTEiJ_P0096885 Pbsn protein_coding protein_coding MGP_CASTEiJ_T0096886.1 MGP_CASTEiJ_G0034839.1 mouse_genomes_project X 59420514 59438111 - MGP_CASTEiJ_P0096886 Pbsn protein_coding protein_coding MGP_CASTEiJ_T0009152.1 MGP_CASTEiJ_G0007363.1 mouse_genomes_project X 49043046 49044316 + 1700036O09Rik lincRNA lincRNA MGP_CASTEiJ_T0015605.1 MGP_CASTEiJ_G0013768.1 mouse_genomes_project X 12906229 12906386 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095991.1 MGP_CASTEiJ_G0034585.1 mouse_genomes_project X 15533697 15537365 + MGP_CASTEiJ_P0095991 Ssxa1 protein_coding protein_coding MGP_CASTEiJ_T0096032.1 MGP_CASTEiJ_G0034602.1 mouse_genomes_project X 20136967 20171935 + MGP_CASTEiJ_P0096032 Slc25a43 protein_coding protein_coding MGP_CASTEiJ_T0096033.1 MGP_CASTEiJ_G0034602.1 mouse_genomes_project X 20137019 20171018 + Slc25a43 protein_coding processed_transcript MGP_CASTEiJ_T0015643.1 MGP_CASTEiJ_G0013806.1 mouse_genomes_project X 22534533 22534854 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010813.1 MGP_CASTEiJ_G0009001.1 mouse_genomes_project X 22079899 22079965 - Gm25642 miRNA miRNA MGP_CASTEiJ_T0017881.1 MGP_CASTEiJ_G0015095.1 mouse_genomes_project X 54822627 54833387 + processed_transcript processed_transcript MGP_CASTEiJ_T0097750.1 MGP_CASTEiJ_G0035104.1 mouse_genomes_project X 119057023 119071006 + MGP_CASTEiJ_P0097750 Mid2 protein_coding protein_coding MGP_CASTEiJ_T0097751.1 MGP_CASTEiJ_G0035104.1 mouse_genomes_project X 119057380 119159953 + MGP_CASTEiJ_P0097751 Mid2 protein_coding protein_coding MGP_CASTEiJ_T0097752.1 MGP_CASTEiJ_G0035104.1 mouse_genomes_project X 119057496 119156233 + MGP_CASTEiJ_P0097752 Mid2 protein_coding protein_coding MGP_CASTEiJ_T0097753.1 MGP_CASTEiJ_G0035104.1 mouse_genomes_project X 119070325 119159953 + MGP_CASTEiJ_P0097753 Mid2 protein_coding protein_coding MGP_CASTEiJ_T0097754.1 MGP_CASTEiJ_G0035104.1 mouse_genomes_project X 119141406 119144546 + Mid2 protein_coding retained_intron MGP_CASTEiJ_T0015850.1 MGP_CASTEiJ_G0014013.1 mouse_genomes_project X 71176691 71180813 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016207.1 MGP_CASTEiJ_G0014370.1 mouse_genomes_project X 138053935 138054065 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097439.1 MGP_CASTEiJ_G0034999.1 mouse_genomes_project X 93732150 93794016 - MGP_CASTEiJ_P0097439 Pof1b protein_coding protein_coding MGP_CASTEiJ_T0096312.1 MGP_CASTEiJ_G0034702.1 mouse_genomes_project X 38261170 38266615 - MGP_CASTEiJ_P0096312 Gm648 protein_coding protein_coding MGP_CASTEiJ_T0096066.1 MGP_CASTEiJ_G0034619.1 mouse_genomes_project X 21308993 21314004 - Btg1-ps1 protein_coding unprocessed_pseudogene MGP_CASTEiJ_T0096069.1 MGP_CASTEiJ_G0034619.1 mouse_genomes_project X 21309696 21314004 - MGP_CASTEiJ_P0096069 Btg1-ps1 protein_coding protein_coding MGP_CASTEiJ_T0015733.1 MGP_CASTEiJ_G0013896.1 mouse_genomes_project X 43688075 43689072 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017888.1 MGP_CASTEiJ_G0015101.1 mouse_genomes_project X 86434944 86468978 - 5530601H04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017889.1 MGP_CASTEiJ_G0015101.1 mouse_genomes_project X 86436551 86468928 - 5530601H04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017890.1 MGP_CASTEiJ_G0015101.1 mouse_genomes_project X 86436560 86468924 - 5530601H04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017891.1 MGP_CASTEiJ_G0015101.1 mouse_genomes_project X 86438569 86469006 - 5530601H04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017892.1 MGP_CASTEiJ_G0015101.1 mouse_genomes_project X 86439116 86469006 - 5530601H04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017893.1 MGP_CASTEiJ_G0015101.1 mouse_genomes_project X 86440361 86468969 - 5530601H04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017894.1 MGP_CASTEiJ_G0015101.1 mouse_genomes_project X 86440973 86468925 - 5530601H04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017895.1 MGP_CASTEiJ_G0015101.1 mouse_genomes_project X 86441505 86468937 - 5530601H04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017896.1 MGP_CASTEiJ_G0015101.1 mouse_genomes_project X 86441703 86468917 - 5530601H04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017897.1 MGP_CASTEiJ_G0015101.1 mouse_genomes_project X 86441778 86468990 - 5530601H04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017898.1 MGP_CASTEiJ_G0015101.1 mouse_genomes_project X 86461727 86468986 - 5530601H04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017899.1 MGP_CASTEiJ_G0015101.1 mouse_genomes_project X 86466743 86468976 - 5530601H04Rik processed_transcript retained_intron MGP_CASTEiJ_T0017900.1 MGP_CASTEiJ_G0015101.1 mouse_genomes_project X 86467993 86477963 - 5530601H04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017901.1 MGP_CASTEiJ_G0015101.1 mouse_genomes_project X 86473591 86474345 - 5530601H04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017902.1 MGP_CASTEiJ_G0015101.1 mouse_genomes_project X 86473801 86478179 - 5530601H04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017903.1 MGP_CASTEiJ_G0015101.1 mouse_genomes_project X 86475812 86477987 - 5530601H04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0015813.1 MGP_CASTEiJ_G0013976.1 mouse_genomes_project X 62339892 62340025 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000209.1 MGP_CASTEiJ_G0000158.1 mouse_genomes_project X 117183004 117183438 - MGP_CASTEiJ_P0000209 Ighv1-24 IG_V_gene IG_V_gene MGP_CASTEiJ_T0098775.1 MGP_CASTEiJ_G0035706.1 mouse_genomes_project X 74977722 74977857 - Gm23557 scaRNA scaRNA MGP_CASTEiJ_T0016153.1 MGP_CASTEiJ_G0014316.1 mouse_genomes_project X 127850393 127852776 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015803.1 MGP_CASTEiJ_G0013966.1 mouse_genomes_project X 59954224 59955322 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101440.1 MGP_CASTEiJ_G0038353.1 mouse_genomes_project X 58515601 58515740 + Gm23280 snoRNA snoRNA MGP_CASTEiJ_T0096298.1 MGP_CASTEiJ_G0034694.1 mouse_genomes_project X 36560460 36574802 + MGP_CASTEiJ_P0096298 4930502E18Rik protein_coding protein_coding MGP_CASTEiJ_T0096224.1 MGP_CASTEiJ_G0034663.1 mouse_genomes_project X 31866070 31900643 - MGP_CASTEiJ_P0096224 Gm595 protein_coding protein_coding MGP_CASTEiJ_T0015859.1 MGP_CASTEiJ_G0014022.1 mouse_genomes_project X 72957531 72957919 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015843.1 MGP_CASTEiJ_G0014006.1 mouse_genomes_project X 70137774 70138896 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096263.1 MGP_CASTEiJ_G0034676.1 mouse_genomes_project X 34277264 34572827 - MGP_CASTEiJ_P0096263 Hs6st2 protein_coding protein_coding MGP_CASTEiJ_T0096264.1 MGP_CASTEiJ_G0034676.1 mouse_genomes_project X 34277264 34572980 - MGP_CASTEiJ_P0096264 Hs6st2 protein_coding protein_coding MGP_CASTEiJ_T0096265.1 MGP_CASTEiJ_G0034676.1 mouse_genomes_project X 34567887 34572472 - Hs6st2 protein_coding retained_intron MGP_CASTEiJ_T0096266.1 MGP_CASTEiJ_G0034676.1 mouse_genomes_project X 34571096 34571670 - Hs6st2 protein_coding processed_transcript MGP_CASTEiJ_T0096267.1 MGP_CASTEiJ_G0034676.1 mouse_genomes_project X 34571282 34572210 - Hs6st2 protein_coding processed_transcript MGP_CASTEiJ_T0096157.1 MGP_CASTEiJ_G0034643.1 mouse_genomes_project X 26808119 26810492 + MGP_CASTEiJ_P0096157 Gm362 protein_coding protein_coding MGP_CASTEiJ_T0097393.1 MGP_CASTEiJ_G0034981.1 mouse_genomes_project X 89340047 89342750 - MGP_CASTEiJ_P0097393 Gm732 protein_coding protein_coding MGP_CASTEiJ_T0097394.1 MGP_CASTEiJ_G0034981.1 mouse_genomes_project X 89341188 89342779 - MGP_CASTEiJ_P0097394 Gm732 protein_coding protein_coding MGP_CASTEiJ_T0097457.1 MGP_CASTEiJ_G0035004.1 mouse_genomes_project X 95897174 95898103 + MGP_CASTEiJ_P0097457 Ube2dnl2 protein_coding protein_coding MGP_CASTEiJ_T0016212.1 MGP_CASTEiJ_G0014375.1 mouse_genomes_project X 140150558 140200197 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015874.1 MGP_CASTEiJ_G0014037.1 mouse_genomes_project X 75755228 75756081 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102627.1 MGP_CASTEiJ_G0039351.1 mouse_genomes_project X 52051311 52052226 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0096968.1 MGP_CASTEiJ_G0034869.1 mouse_genomes_project X 75165044 75231211 - MGP_CASTEiJ_P0096968 Pdk3 protein_coding protein_coding MGP_CASTEiJ_T0096969.1 MGP_CASTEiJ_G0034869.1 mouse_genomes_project X 75165533 75169508 - Pdk3 protein_coding processed_transcript MGP_CASTEiJ_T0096970.1 MGP_CASTEiJ_G0034869.1 mouse_genomes_project X 75182650 75189927 - Pdk3 protein_coding processed_transcript MGP_CASTEiJ_T0097171.1 MGP_CASTEiJ_G0034921.1 mouse_genomes_project X 82484783 82508283 + MGP_CASTEiJ_P0097171 Med12 protein_coding protein_coding MGP_CASTEiJ_T0097172.1 MGP_CASTEiJ_G0034921.1 mouse_genomes_project X 82484982 82508283 + MGP_CASTEiJ_P0097172 Med12 protein_coding protein_coding MGP_CASTEiJ_T0097173.1 MGP_CASTEiJ_G0034921.1 mouse_genomes_project X 82485013 82508283 + MGP_CASTEiJ_P0097173 Med12 protein_coding protein_coding MGP_CASTEiJ_T0097174.1 MGP_CASTEiJ_G0034921.1 mouse_genomes_project X 82485013 82508283 + MGP_CASTEiJ_P0097174 Med12 protein_coding protein_coding MGP_CASTEiJ_T0097175.1 MGP_CASTEiJ_G0034921.1 mouse_genomes_project X 82493503 82494976 + Med12 protein_coding retained_intron MGP_CASTEiJ_T0097176.1 MGP_CASTEiJ_G0034921.1 mouse_genomes_project X 82493993 82494747 + Med12 protein_coding processed_transcript MGP_CASTEiJ_T0097177.1 MGP_CASTEiJ_G0034921.1 mouse_genomes_project X 82496839 82508283 + Med12 protein_coding retained_intron MGP_CASTEiJ_T0097178.1 MGP_CASTEiJ_G0034921.1 mouse_genomes_project X 82503951 82506885 + Med12 protein_coding processed_transcript MGP_CASTEiJ_T0097179.1 MGP_CASTEiJ_G0034921.1 mouse_genomes_project X 82507386 82508205 + Med12 protein_coding processed_transcript MGP_CASTEiJ_T0101441.1 MGP_CASTEiJ_G0038354.1 mouse_genomes_project X 60109747 60109881 - Gm22843 snoRNA snoRNA MGP_CASTEiJ_T0015701.1 MGP_CASTEiJ_G0013864.1 mouse_genomes_project X 36504892 36505396 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097760.1 MGP_CASTEiJ_G0035108.1 mouse_genomes_project X 119360808 119397002 + protein_coding processed_transcript MGP_CASTEiJ_T0097761.1 MGP_CASTEiJ_G0035108.1 mouse_genomes_project X 119360820 119461593 + MGP_CASTEiJ_P0097761 protein_coding protein_coding MGP_CASTEiJ_T0097763.1 MGP_CASTEiJ_G0035108.1 mouse_genomes_project X 119459485 119460846 + protein_coding retained_intron MGP_CASTEiJ_T0015553.1 MGP_CASTEiJ_G0013716.1 mouse_genomes_project X 399503 401318 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015617.1 MGP_CASTEiJ_G0013780.1 mouse_genomes_project X 15253605 15253975 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015757.1 MGP_CASTEiJ_G0013920.1 mouse_genomes_project X 48786794 48787412 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097519.1 MGP_CASTEiJ_G0035027.1 mouse_genomes_project X 112299364 112320305 + MGP_CASTEiJ_P0097519 Arl13a protein_coding protein_coding MGP_CASTEiJ_T0096468.1 MGP_CASTEiJ_G0034751.1 mouse_genomes_project X 53393235 53405737 + MGP_CASTEiJ_P0096468 protein_coding protein_coding MGP_CASTEiJ_T0096469.1 MGP_CASTEiJ_G0034751.1 mouse_genomes_project X 53394101 53420114 + protein_coding processed_transcript MGP_CASTEiJ_T0017842.1 MGP_CASTEiJ_G0015080.1 mouse_genomes_project X 1914675 1916795 + Gm14379 processed_transcript processed_transcript MGP_CASTEiJ_T0100222.1 MGP_CASTEiJ_G0037135.1 mouse_genomes_project X 106863936 106864044 + Gm24522 snRNA snRNA MGP_CASTEiJ_T0096664.1 MGP_CASTEiJ_G0034793.1 mouse_genomes_project X 55755341 55779758 + MGP_CASTEiJ_P0096664 Opn1mw protein_coding protein_coding MGP_CASTEiJ_T0096665.1 MGP_CASTEiJ_G0034793.1 mouse_genomes_project X 55755343 55779749 + MGP_CASTEiJ_P0096665 Opn1mw protein_coding protein_coding MGP_CASTEiJ_T0096666.1 MGP_CASTEiJ_G0034793.1 mouse_genomes_project X 55755358 55772026 + Opn1mw protein_coding processed_transcript MGP_CASTEiJ_T0096667.1 MGP_CASTEiJ_G0034793.1 mouse_genomes_project X 55766381 55779754 + Opn1mw protein_coding processed_transcript MGP_CASTEiJ_T0096668.1 MGP_CASTEiJ_G0034793.1 mouse_genomes_project X 55766402 55768343 + Opn1mw protein_coding processed_transcript MGP_CASTEiJ_T0096669.1 MGP_CASTEiJ_G0034793.1 mouse_genomes_project X 55766899 55779754 + MGP_CASTEiJ_P0096669 Opn1mw protein_coding protein_coding MGP_CASTEiJ_T0096330.1 MGP_CASTEiJ_G0034707.1 mouse_genomes_project X 38606384 38716992 + MGP_CASTEiJ_P0096330 protein_coding protein_coding MGP_CASTEiJ_T0096331.1 MGP_CASTEiJ_G0034707.1 mouse_genomes_project X 38608759 38717024 + MGP_CASTEiJ_P0096331 protein_coding protein_coding MGP_CASTEiJ_T0096332.1 MGP_CASTEiJ_G0034707.1 mouse_genomes_project X 38624600 38739791 + MGP_CASTEiJ_P0096332 protein_coding protein_coding MGP_CASTEiJ_T0096333.1 MGP_CASTEiJ_G0034707.1 mouse_genomes_project X 38645075 38645606 + MGP_CASTEiJ_P0096333 protein_coding protein_coding MGP_CASTEiJ_T0096334.1 MGP_CASTEiJ_G0034707.1 mouse_genomes_project X 38696858 38717007 + MGP_CASTEiJ_P0096334 protein_coding protein_coding MGP_CASTEiJ_T0096335.1 MGP_CASTEiJ_G0034707.1 mouse_genomes_project X 38702290 38717014 + MGP_CASTEiJ_P0096335 protein_coding protein_coding MGP_CASTEiJ_T0016021.1 MGP_CASTEiJ_G0014184.1 mouse_genomes_project X 100850272 100851562 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097009.1 MGP_CASTEiJ_G0034879.1 mouse_genomes_project X 76393835 76398022 - MGP_CASTEiJ_P0097009 Spin4 protein_coding protein_coding MGP_CASTEiJ_T0016062.1 MGP_CASTEiJ_G0014225.1 mouse_genomes_project X 112684635 112685000 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010865.1 MGP_CASTEiJ_G0009053.1 mouse_genomes_project X 55974126 55974194 + Mir7092 miRNA miRNA MGP_CASTEiJ_T0015999.1 MGP_CASTEiJ_G0014162.1 mouse_genomes_project X 96244318 96247804 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098704.1 MGP_CASTEiJ_G0035635.1 mouse_genomes_project X 136784662 136784772 + Gm23806 rRNA rRNA MGP_CASTEiJ_T0102650.1 MGP_CASTEiJ_G0039374.1 mouse_genomes_project X 114723859 114725777 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0098725.1 MGP_CASTEiJ_G0035656.1 mouse_genomes_project X 40767719 40767951 - Gm26351 ribozyme ribozyme MGP_CASTEiJ_T0096881.1 MGP_CASTEiJ_G0034837.1 mouse_genomes_project X 59090374 59245203 + MGP_CASTEiJ_P0096881 Tbl1x protein_coding protein_coding MGP_CASTEiJ_T0096882.1 MGP_CASTEiJ_G0034837.1 mouse_genomes_project X 59090575 59241964 + Tbl1x protein_coding retained_intron MGP_CASTEiJ_T0100177.1 MGP_CASTEiJ_G0037090.1 mouse_genomes_project X 15013076 15013247 - Gm23628 snRNA snRNA MGP_CASTEiJ_T0097977.1 MGP_CASTEiJ_G0035151.1 mouse_genomes_project X 129736994 129742568 - Tspyl2 protein_coding retained_intron MGP_CASTEiJ_T0097978.1 MGP_CASTEiJ_G0035151.1 mouse_genomes_project X 129736994 129742568 - Tspyl2 protein_coding retained_intron MGP_CASTEiJ_T0097979.1 MGP_CASTEiJ_G0035151.1 mouse_genomes_project X 129736997 129742568 - MGP_CASTEiJ_P0097979 Tspyl2 protein_coding protein_coding MGP_CASTEiJ_T0097980.1 MGP_CASTEiJ_G0035151.1 mouse_genomes_project X 129739443 129741987 - MGP_CASTEiJ_P0097980 Tspyl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097981.1 MGP_CASTEiJ_G0035151.1 mouse_genomes_project X 129740407 129741944 - Tspyl2 protein_coding retained_intron MGP_CASTEiJ_T0102653.1 MGP_CASTEiJ_G0039377.1 mouse_genomes_project X 126001533 126001861 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101436.1 MGP_CASTEiJ_G0038349.1 mouse_genomes_project X 55920351 55920488 + Snora70 snoRNA snoRNA MGP_CASTEiJ_T0015726.1 MGP_CASTEiJ_G0013889.1 mouse_genomes_project X 42663090 42663815 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015707.1 MGP_CASTEiJ_G0013870.1 mouse_genomes_project X 39389610 39390776 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015987.1 MGP_CASTEiJ_G0014150.1 mouse_genomes_project X 93902385 93902860 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015645.1 MGP_CASTEiJ_G0013808.1 mouse_genomes_project X 23061061 23061452 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097188.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82623637 82635627 - MGP_CASTEiJ_P0097188 Zmym3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097189.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82623646 82640000 - MGP_CASTEiJ_P0097189 Zmym3 protein_coding protein_coding MGP_CASTEiJ_T0097190.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82623646 82639066 - MGP_CASTEiJ_P0097190 Zmym3 protein_coding protein_coding MGP_CASTEiJ_T0097191.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82623646 82639867 - MGP_CASTEiJ_P0097191 Zmym3 protein_coding protein_coding MGP_CASTEiJ_T0097192.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82623646 82638950 - MGP_CASTEiJ_P0097192 Zmym3 protein_coding protein_coding MGP_CASTEiJ_T0097193.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82625241 82628997 - Zmym3 protein_coding processed_transcript MGP_CASTEiJ_T0097194.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82632505 82634183 - Zmym3 protein_coding retained_intron MGP_CASTEiJ_T0097195.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82633464 82636741 - Zmym3 protein_coding processed_transcript MGP_CASTEiJ_T0097196.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82633772 82634430 - Zmym3 protein_coding retained_intron MGP_CASTEiJ_T0097197.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82634192 82636640 - Zmym3 protein_coding retained_intron MGP_CASTEiJ_T0097198.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82634193 82638961 - MGP_CASTEiJ_P0097198 Zmym3 protein_coding protein_coding MGP_CASTEiJ_T0097199.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82634196 82639836 - MGP_CASTEiJ_P0097199 Zmym3 protein_coding protein_coding MGP_CASTEiJ_T0097200.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82634196 82638993 - MGP_CASTEiJ_P0097200 Zmym3 protein_coding protein_coding MGP_CASTEiJ_T0097201.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82634201 82639368 - MGP_CASTEiJ_P0097201 Zmym3 protein_coding protein_coding MGP_CASTEiJ_T0097202.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82634221 82639516 - MGP_CASTEiJ_P0097202 Zmym3 protein_coding protein_coding MGP_CASTEiJ_T0097203.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82634278 82636637 - Zmym3 protein_coding retained_intron MGP_CASTEiJ_T0097204.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82635450 82638981 - Zmym3 protein_coding processed_transcript MGP_CASTEiJ_T0097205.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82635537 82636954 - Zmym3 protein_coding retained_intron MGP_CASTEiJ_T0097206.1 MGP_CASTEiJ_G0034924.1 mouse_genomes_project X 82635646 82639012 - MGP_CASTEiJ_P0097206 Zmym3 protein_coding protein_coding MGP_CASTEiJ_T0015917.1 MGP_CASTEiJ_G0014080.1 mouse_genomes_project X 83455104 83455570 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017874.1 MGP_CASTEiJ_G0015093.1 mouse_genomes_project X 36532645 36533987 - processed_transcript TEC MGP_CASTEiJ_T0017875.1 MGP_CASTEiJ_G0015093.1 mouse_genomes_project X 36533658 36543391 - processed_transcript lincRNA MGP_CASTEiJ_T0097914.1 MGP_CASTEiJ_G0035143.1 mouse_genomes_project X 128728798 128854796 + Fam120c protein_coding retained_intron MGP_CASTEiJ_T0097915.1 MGP_CASTEiJ_G0035143.1 mouse_genomes_project X 128728798 128854796 + MGP_CASTEiJ_P0097915 Fam120c protein_coding protein_coding MGP_CASTEiJ_T0097779.1 MGP_CASTEiJ_G0035117.1 mouse_genomes_project X 120638887 120712679 - MGP_CASTEiJ_P0097779 Acsl4 protein_coding protein_coding MGP_CASTEiJ_T0097780.1 MGP_CASTEiJ_G0035117.1 mouse_genomes_project X 120641580 120649069 - Acsl4 protein_coding processed_transcript MGP_CASTEiJ_T0097781.1 MGP_CASTEiJ_G0035117.1 mouse_genomes_project X 120641586 120712683 - MGP_CASTEiJ_P0097781 Acsl4 protein_coding protein_coding MGP_CASTEiJ_T0097705.1 MGP_CASTEiJ_G0035092.1 mouse_genomes_project X 117902985 118019678 + MGP_CASTEiJ_P0097705 Rnf128 protein_coding protein_coding MGP_CASTEiJ_T0097706.1 MGP_CASTEiJ_G0035092.1 mouse_genomes_project X 117951009 118019685 + MGP_CASTEiJ_P0097706 Rnf128 protein_coding protein_coding MGP_CASTEiJ_T0097707.1 MGP_CASTEiJ_G0035092.1 mouse_genomes_project X 117951756 118018280 + Rnf128 protein_coding processed_transcript MGP_CASTEiJ_T0096359.1 MGP_CASTEiJ_G0034716.1 mouse_genomes_project X 39759064 39767670 + MGP_CASTEiJ_P0096359 Zic3 protein_coding protein_coding MGP_CASTEiJ_T0096360.1 MGP_CASTEiJ_G0034716.1 mouse_genomes_project X 39766864 39774019 + MGP_CASTEiJ_P0096360 Zic3 protein_coding protein_coding MGP_CASTEiJ_T0096361.1 MGP_CASTEiJ_G0034716.1 mouse_genomes_project X 39767220 39774019 + MGP_CASTEiJ_P0096361 Zic3 protein_coding protein_coding MGP_CASTEiJ_T0096362.1 MGP_CASTEiJ_G0034716.1 mouse_genomes_project X 39767231 39779165 + MGP_CASTEiJ_P0096362 Zic3 protein_coding protein_coding MGP_CASTEiJ_T0096363.1 MGP_CASTEiJ_G0034716.1 mouse_genomes_project X 39768038 39831087 + MGP_CASTEiJ_P0096363 Zic3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009192.1 MGP_CASTEiJ_G0007389.1 mouse_genomes_project X 122449161 122461844 + lincRNA lincRNA MGP_CASTEiJ_T0015742.1 MGP_CASTEiJ_G0013905.1 mouse_genomes_project X 44731399 44732306 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095816.1 MGP_CASTEiJ_G0034536.1 mouse_genomes_project X 4218964 4226546 - MGP_CASTEiJ_P0095816 Dynlt3 protein_coding protein_coding MGP_CASTEiJ_T0095817.1 MGP_CASTEiJ_G0034536.1 mouse_genomes_project X 4219583 4223191 - Dynlt3 protein_coding processed_transcript MGP_CASTEiJ_T0095818.1 MGP_CASTEiJ_G0034536.1 mouse_genomes_project X 4219846 4226546 - Dynlt3 protein_coding processed_transcript MGP_CASTEiJ_T0095819.1 MGP_CASTEiJ_G0034536.1 mouse_genomes_project X 4219908 4220928 - Dynlt3 protein_coding processed_transcript MGP_CASTEiJ_T0096206.1 MGP_CASTEiJ_G0034659.1 mouse_genomes_project X 31573562 31630472 - MGP_CASTEiJ_P0096206 Zfp280c protein_coding protein_coding MGP_CASTEiJ_T0096207.1 MGP_CASTEiJ_G0034659.1 mouse_genomes_project X 31573562 31628494 - MGP_CASTEiJ_P0096207 Zfp280c protein_coding protein_coding MGP_CASTEiJ_T0096208.1 MGP_CASTEiJ_G0034659.1 mouse_genomes_project X 31573562 31630551 - MGP_CASTEiJ_P0096208 Zfp280c protein_coding protein_coding MGP_CASTEiJ_T0096209.1 MGP_CASTEiJ_G0034659.1 mouse_genomes_project X 31573563 31628122 - MGP_CASTEiJ_P0096209 Zfp280c protein_coding protein_coding MGP_CASTEiJ_T0096210.1 MGP_CASTEiJ_G0034659.1 mouse_genomes_project X 31574694 31575647 - Zfp280c protein_coding retained_intron MGP_CASTEiJ_T0096211.1 MGP_CASTEiJ_G0034659.1 mouse_genomes_project X 31613072 31630490 - Zfp280c protein_coding processed_transcript MGP_CASTEiJ_T0096212.1 MGP_CASTEiJ_G0034659.1 mouse_genomes_project X 31622232 31630603 - Zfp280c protein_coding processed_transcript MGP_CASTEiJ_T0096877.1 MGP_CASTEiJ_G0034834.1 mouse_genomes_project X 58061799 58062754 + MGP_CASTEiJ_P0096877 protein_coding protein_coding MGP_CASTEiJ_T0097290.1 MGP_CASTEiJ_G0034952.1 mouse_genomes_project X 85480739 85604467 - MGP_CASTEiJ_P0097290 C77370 protein_coding protein_coding MGP_CASTEiJ_T0097291.1 MGP_CASTEiJ_G0034952.1 mouse_genomes_project X 85480740 85604399 - MGP_CASTEiJ_P0097291 C77370 protein_coding protein_coding MGP_CASTEiJ_T0097292.1 MGP_CASTEiJ_G0034952.1 mouse_genomes_project X 85487001 85604426 - MGP_CASTEiJ_P0097292 C77370 protein_coding protein_coding MGP_CASTEiJ_T0096336.1 MGP_CASTEiJ_G0034708.1 mouse_genomes_project X 38787822 38793519 + MGP_CASTEiJ_P0096336 Brs3 protein_coding protein_coding MGP_CASTEiJ_T0015657.1 MGP_CASTEiJ_G0013820.1 mouse_genomes_project X 25126653 25127319 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005471.1 MGP_CASTEiJ_G0004618.1 mouse_genomes_project X 139270663 139271226 + Gm15202 antisense antisense MGP_CASTEiJ_T0015758.1 MGP_CASTEiJ_G0013921.1 mouse_genomes_project X 49242772 49245488 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015744.1 MGP_CASTEiJ_G0013907.1 mouse_genomes_project X 45049608 45049910 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009164.1 MGP_CASTEiJ_G0007374.1 mouse_genomes_project X 80609681 80619382 - Gm14809 lincRNA lincRNA MGP_CASTEiJ_T0100179.1 MGP_CASTEiJ_G0037092.1 mouse_genomes_project X 16843810 16843913 + Gm25812 snRNA snRNA MGP_CASTEiJ_T0098693.1 MGP_CASTEiJ_G0035624.1 mouse_genomes_project X 58467401 58467509 - Gm26041 rRNA rRNA MGP_CASTEiJ_T0015566.1 MGP_CASTEiJ_G0013729.1 mouse_genomes_project X 2624257 2624686 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097259.1 MGP_CASTEiJ_G0034938.1 mouse_genomes_project X 83799852 83926210 - MGP_CASTEiJ_P0097259 Phka1 protein_coding protein_coding MGP_CASTEiJ_T0097260.1 MGP_CASTEiJ_G0034938.1 mouse_genomes_project X 83799852 83926210 - MGP_CASTEiJ_P0097260 Phka1 protein_coding protein_coding MGP_CASTEiJ_T0097261.1 MGP_CASTEiJ_G0034938.1 mouse_genomes_project X 83799852 83926210 - MGP_CASTEiJ_P0097261 Phka1 protein_coding protein_coding MGP_CASTEiJ_T0097262.1 MGP_CASTEiJ_G0034938.1 mouse_genomes_project X 83799852 83926210 - MGP_CASTEiJ_P0097262 Phka1 protein_coding protein_coding MGP_CASTEiJ_T0097263.1 MGP_CASTEiJ_G0034938.1 mouse_genomes_project X 83799852 83926210 - MGP_CASTEiJ_P0097263 Phka1 protein_coding protein_coding MGP_CASTEiJ_T0097264.1 MGP_CASTEiJ_G0034938.1 mouse_genomes_project X 83799852 83926210 - MGP_CASTEiJ_P0097264 Phka1 protein_coding protein_coding MGP_CASTEiJ_T0097265.1 MGP_CASTEiJ_G0034938.1 mouse_genomes_project X 83841436 83926210 - Phka1 protein_coding retained_intron MGP_CASTEiJ_T0097637.1 MGP_CASTEiJ_G0035068.1 mouse_genomes_project X 114818149 114887409 + protein_coding processed_transcript MGP_CASTEiJ_T0096303.1 MGP_CASTEiJ_G0034699.1 mouse_genomes_project X 38043342 38064068 + MGP_CASTEiJ_P0096303 Zfp449 protein_coding protein_coding MGP_CASTEiJ_T0098687.1 MGP_CASTEiJ_G0035618.1 mouse_genomes_project X 7909642 7909754 - n-R5s3 rRNA rRNA MGP_CASTEiJ_T0100173.1 MGP_CASTEiJ_G0037086.1 mouse_genomes_project X 8999227 8999418 - Gm25202 snRNA snRNA MGP_CASTEiJ_T0097402.1 MGP_CASTEiJ_G0034984.1 mouse_genomes_project X 90348135 90356894 - MGP_CASTEiJ_P0097402 Hmgn5 protein_coding protein_coding MGP_CASTEiJ_T0015872.1 MGP_CASTEiJ_G0014035.1 mouse_genomes_project X 75439082 75439849 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015721.1 MGP_CASTEiJ_G0013884.1 mouse_genomes_project X 42296853 42297295 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015811.1 MGP_CASTEiJ_G0013974.1 mouse_genomes_project X 61635189 61635348 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098211.1 MGP_CASTEiJ_G0035214.1 mouse_genomes_project X 141833192 141847337 + MGP_CASTEiJ_P0098211 Piga protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098212.1 MGP_CASTEiJ_G0035214.1 mouse_genomes_project X 141833192 141847332 + MGP_CASTEiJ_P0098212 Piga protein_coding protein_coding MGP_CASTEiJ_T0098213.1 MGP_CASTEiJ_G0035214.1 mouse_genomes_project X 141833217 141847330 + MGP_CASTEiJ_P0098213 Piga protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098214.1 MGP_CASTEiJ_G0035214.1 mouse_genomes_project X 141833308 141847334 + MGP_CASTEiJ_P0098214 Piga protein_coding protein_coding MGP_CASTEiJ_T0098215.1 MGP_CASTEiJ_G0035214.1 mouse_genomes_project X 141835989 141845384 + MGP_CASTEiJ_P0098215 Piga protein_coding protein_coding MGP_CASTEiJ_T0098216.1 MGP_CASTEiJ_G0035214.1 mouse_genomes_project X 141838913 141845471 + Piga protein_coding retained_intron MGP_CASTEiJ_T0097590.1 MGP_CASTEiJ_G0035049.1 mouse_genomes_project X 113488309 113494063 + MGP_CASTEiJ_P0097590 protein_coding protein_coding MGP_CASTEiJ_T0015948.1 MGP_CASTEiJ_G0014111.1 mouse_genomes_project X 86423148 86423929 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015831.1 MGP_CASTEiJ_G0013994.1 mouse_genomes_project X 67374711 67375226 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015584.1 MGP_CASTEiJ_G0013747.1 mouse_genomes_project X 7641950 7642307 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097970.1 MGP_CASTEiJ_G0035150.1 mouse_genomes_project X 129623244 129669754 + MGP_CASTEiJ_P0097970 Kdm5c protein_coding protein_coding MGP_CASTEiJ_T0097971.1 MGP_CASTEiJ_G0035150.1 mouse_genomes_project X 129623453 129670525 + MGP_CASTEiJ_P0097971 Kdm5c protein_coding protein_coding MGP_CASTEiJ_T0097972.1 MGP_CASTEiJ_G0035150.1 mouse_genomes_project X 129623478 129638468 + Kdm5c protein_coding retained_intron MGP_CASTEiJ_T0097973.1 MGP_CASTEiJ_G0035150.1 mouse_genomes_project X 129623496 129669758 + MGP_CASTEiJ_P0097973 Kdm5c protein_coding protein_coding MGP_CASTEiJ_T0097974.1 MGP_CASTEiJ_G0035150.1 mouse_genomes_project X 129623785 129670528 + MGP_CASTEiJ_P0097974 Kdm5c protein_coding unknown_likely_coding MGP_CASTEiJ_T0097975.1 MGP_CASTEiJ_G0035150.1 mouse_genomes_project X 129665797 129667548 + MGP_CASTEiJ_P0097975 Kdm5c protein_coding protein_coding MGP_CASTEiJ_T0097976.1 MGP_CASTEiJ_G0035150.1 mouse_genomes_project X 129667904 129669384 + MGP_CASTEiJ_P0097976 Kdm5c protein_coding protein_coding MGP_CASTEiJ_T0016232.1 MGP_CASTEiJ_G0014395.1 mouse_genomes_project X 144803341 144803884 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016059.1 MGP_CASTEiJ_G0014222.1 mouse_genomes_project X 111356472 111357507 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016168.1 MGP_CASTEiJ_G0014331.1 mouse_genomes_project X 131157133 131157413 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016018.1 MGP_CASTEiJ_G0014181.1 mouse_genomes_project X 99166934 99168739 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015679.1 MGP_CASTEiJ_G0013842.1 mouse_genomes_project X 30750279 30753372 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009163.1 MGP_CASTEiJ_G0007373.1 mouse_genomes_project X 80605440 80644197 - Gm14812 lincRNA lincRNA MGP_CASTEiJ_T0015642.1 MGP_CASTEiJ_G0013805.1 mouse_genomes_project X 22438515 22438771 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096398.1 MGP_CASTEiJ_G0034732.1 mouse_genomes_project X 47977618 47978482 - MGP_CASTEiJ_P0096398 4930447F04Rik protein_coding protein_coding MGP_CASTEiJ_T0010804.1 MGP_CASTEiJ_G0008992.1 mouse_genomes_project X 2366751 2366872 + Mir1198 miRNA miRNA MGP_CASTEiJ_T0097985.1 MGP_CASTEiJ_G0035154.1 mouse_genomes_project X 129991337 130158086 - MGP_CASTEiJ_P0097985 Shroom2 protein_coding protein_coding MGP_CASTEiJ_T0097986.1 MGP_CASTEiJ_G0035154.1 mouse_genomes_project X 129991626 130024532 - Shroom2 protein_coding processed_transcript MGP_CASTEiJ_T0097987.1 MGP_CASTEiJ_G0035154.1 mouse_genomes_project X 129991626 130158090 - MGP_CASTEiJ_P0097987 Shroom2 protein_coding protein_coding MGP_CASTEiJ_T0097988.1 MGP_CASTEiJ_G0035154.1 mouse_genomes_project X 129994012 130158116 - MGP_CASTEiJ_P0097988 Shroom2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097989.1 MGP_CASTEiJ_G0035154.1 mouse_genomes_project X 129994159 130056655 - Shroom2 protein_coding processed_transcript MGP_CASTEiJ_T0097990.1 MGP_CASTEiJ_G0035154.1 mouse_genomes_project X 130000561 130023913 - Shroom2 protein_coding processed_transcript MGP_CASTEiJ_T0097991.1 MGP_CASTEiJ_G0035154.1 mouse_genomes_project X 130000770 130024099 - Shroom2 protein_coding processed_transcript MGP_CASTEiJ_T0098024.1 MGP_CASTEiJ_G0035169.1 mouse_genomes_project X 132646537 132647670 + Acot9 protein_coding processed_transcript MGP_CASTEiJ_T0098025.1 MGP_CASTEiJ_G0035169.1 mouse_genomes_project X 132646537 132685238 + MGP_CASTEiJ_P0098025 Acot9 protein_coding protein_coding MGP_CASTEiJ_T0098026.1 MGP_CASTEiJ_G0035169.1 mouse_genomes_project X 132646599 132685230 + MGP_CASTEiJ_P0098026 Acot9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098027.1 MGP_CASTEiJ_G0035169.1 mouse_genomes_project X 132681428 132684500 + Acot9 protein_coding retained_intron MGP_CASTEiJ_T0101431.1 MGP_CASTEiJ_G0038344.1 mouse_genomes_project X 50138168 50138293 + Gm22332 snoRNA snoRNA MGP_CASTEiJ_T0015714.1 MGP_CASTEiJ_G0013877.1 mouse_genomes_project X 40407854 40408316 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096401.1 MGP_CASTEiJ_G0034734.1 mouse_genomes_project X 49508155 49509742 - MGP_CASTEiJ_P0096401 4933436I01Rik protein_coding protein_coding MGP_CASTEiJ_T0015743.1 MGP_CASTEiJ_G0013906.1 mouse_genomes_project X 44879660 44881471 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016042.1 MGP_CASTEiJ_G0014205.1 mouse_genomes_project X 106463086 106463750 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015864.1 MGP_CASTEiJ_G0014027.1 mouse_genomes_project X 73449022 73449685 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015907.1 MGP_CASTEiJ_G0014070.1 mouse_genomes_project X 81517491 81518629 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096075.1 MGP_CASTEiJ_G0034624.1 mouse_genomes_project X 21434857 21444376 + MGP_CASTEiJ_P0096075 Rhox13 protein_coding protein_coding MGP_CASTEiJ_T0100229.1 MGP_CASTEiJ_G0037142.1 mouse_genomes_project X 124548945 124549005 - Gm26151 snRNA snRNA MGP_CASTEiJ_T0096773.1 MGP_CASTEiJ_G0034808.1 mouse_genomes_project X 56040786 56050187 - MGP_CASTEiJ_P0096773 Fam3a protein_coding protein_coding MGP_CASTEiJ_T0096774.1 MGP_CASTEiJ_G0034808.1 mouse_genomes_project X 56040828 56050018 - MGP_CASTEiJ_P0096774 Fam3a protein_coding protein_coding MGP_CASTEiJ_T0096775.1 MGP_CASTEiJ_G0034808.1 mouse_genomes_project X 56040828 56049918 - MGP_CASTEiJ_P0096775 Fam3a protein_coding protein_coding MGP_CASTEiJ_T0096776.1 MGP_CASTEiJ_G0034808.1 mouse_genomes_project X 56041272 56050097 - MGP_CASTEiJ_P0096776 Fam3a protein_coding protein_coding MGP_CASTEiJ_T0096777.1 MGP_CASTEiJ_G0034808.1 mouse_genomes_project X 56041370 56050018 - MGP_CASTEiJ_P0096777 Fam3a protein_coding protein_coding MGP_CASTEiJ_T0096778.1 MGP_CASTEiJ_G0034808.1 mouse_genomes_project X 56042488 56050170 - MGP_CASTEiJ_P0096778 Fam3a protein_coding protein_coding MGP_CASTEiJ_T0096779.1 MGP_CASTEiJ_G0034808.1 mouse_genomes_project X 56042698 56050018 - MGP_CASTEiJ_P0096779 Fam3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096780.1 MGP_CASTEiJ_G0034808.1 mouse_genomes_project X 56042922 56043822 - Fam3a protein_coding retained_intron MGP_CASTEiJ_T0096781.1 MGP_CASTEiJ_G0034808.1 mouse_genomes_project X 56042978 56049602 - MGP_CASTEiJ_P0096781 Fam3a protein_coding protein_coding MGP_CASTEiJ_T0096782.1 MGP_CASTEiJ_G0034808.1 mouse_genomes_project X 56042978 56049665 - MGP_CASTEiJ_P0096782 Fam3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0010907.1 MGP_CASTEiJ_G0009095.1 mouse_genomes_project X 144386878 144386987 - Gm22368 miRNA miRNA MGP_CASTEiJ_T0015857.1 MGP_CASTEiJ_G0014020.1 mouse_genomes_project X 72656613 72656987 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011428.1 MGP_CASTEiJ_G0009616.1 mouse_genomes_project X 50246611 50246739 + Gm27838 misc_RNA misc_RNA MGP_CASTEiJ_T0097362.1 MGP_CASTEiJ_G0034971.1 mouse_genomes_project X 88013736 88136578 + MGP_CASTEiJ_P0097362 Gm5127 protein_coding protein_coding MGP_CASTEiJ_T0097363.1 MGP_CASTEiJ_G0034971.1 mouse_genomes_project X 88013736 88135888 + MGP_CASTEiJ_P0097363 Gm5127 protein_coding protein_coding MGP_CASTEiJ_T0009204.1 MGP_CASTEiJ_G0007394.1 mouse_genomes_project X 139175272 139177270 - Scml1 lincRNA lincRNA MGP_CASTEiJ_T0016055.1 MGP_CASTEiJ_G0014218.1 mouse_genomes_project X 110344282 110345225 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097609.1 MGP_CASTEiJ_G0035056.1 mouse_genomes_project X 114049384 114053855 + Gprasp2 protein_coding retained_intron MGP_CASTEiJ_T0097610.1 MGP_CASTEiJ_G0035056.1 mouse_genomes_project X 114050459 114099619 + MGP_CASTEiJ_P0097610 Gprasp2 protein_coding protein_coding MGP_CASTEiJ_T0097611.1 MGP_CASTEiJ_G0035056.1 mouse_genomes_project X 114050491 114099615 + MGP_CASTEiJ_P0097611 Gprasp2 protein_coding protein_coding MGP_CASTEiJ_T0016049.1 MGP_CASTEiJ_G0014212.1 mouse_genomes_project X 108708795 108709237 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097866.1 MGP_CASTEiJ_G0035136.1 mouse_genomes_project X 127962740 127998588 + MGP_CASTEiJ_P0097866 Pfkfb1 protein_coding protein_coding MGP_CASTEiJ_T0097867.1 MGP_CASTEiJ_G0035136.1 mouse_genomes_project X 127962767 127992734 + Pfkfb1 protein_coding processed_transcript MGP_CASTEiJ_T0097868.1 MGP_CASTEiJ_G0035136.1 mouse_genomes_project X 127964434 128014249 + MGP_CASTEiJ_P0097868 Pfkfb1 protein_coding protein_coding MGP_CASTEiJ_T0097869.1 MGP_CASTEiJ_G0035136.1 mouse_genomes_project X 127966460 128014249 + MGP_CASTEiJ_P0097869 Pfkfb1 protein_coding protein_coding MGP_CASTEiJ_T0097870.1 MGP_CASTEiJ_G0035136.1 mouse_genomes_project X 127966592 128014228 + Pfkfb1 protein_coding retained_intron MGP_CASTEiJ_T0097871.1 MGP_CASTEiJ_G0035136.1 mouse_genomes_project X 127993733 127998113 + Pfkfb1 protein_coding processed_transcript MGP_CASTEiJ_T0097872.1 MGP_CASTEiJ_G0035136.1 mouse_genomes_project X 127998745 128012347 + Pfkfb1 protein_coding processed_transcript MGP_CASTEiJ_T0098141.1 MGP_CASTEiJ_G0035195.1 mouse_genomes_project X 139074307 139138300 + MGP_CASTEiJ_P0098141 Rai2 protein_coding protein_coding MGP_CASTEiJ_T0098142.1 MGP_CASTEiJ_G0035195.1 mouse_genomes_project X 139074865 139138302 + MGP_CASTEiJ_P0098142 Rai2 protein_coding protein_coding MGP_CASTEiJ_T0096658.1 MGP_CASTEiJ_G0034792.1 mouse_genomes_project X 55642441 55707822 - MGP_CASTEiJ_P0096658 Mecp2 protein_coding protein_coding MGP_CASTEiJ_T0096659.1 MGP_CASTEiJ_G0034792.1 mouse_genomes_project X 55642677 55702204 - MGP_CASTEiJ_P0096659 Mecp2 protein_coding protein_coding MGP_CASTEiJ_T0096660.1 MGP_CASTEiJ_G0034792.1 mouse_genomes_project X 55651132 55707843 - MGP_CASTEiJ_P0096660 Mecp2 protein_coding protein_coding MGP_CASTEiJ_T0096661.1 MGP_CASTEiJ_G0034792.1 mouse_genomes_project X 55651133 55707765 - MGP_CASTEiJ_P0096661 Mecp2 protein_coding protein_coding MGP_CASTEiJ_T0096662.1 MGP_CASTEiJ_G0034792.1 mouse_genomes_project X 55651514 55707763 - MGP_CASTEiJ_P0096662 Mecp2 protein_coding protein_coding MGP_CASTEiJ_T0096663.1 MGP_CASTEiJ_G0034792.1 mouse_genomes_project X 55703192 55707750 - Mecp2 protein_coding retained_intron MGP_CASTEiJ_T0010896.1 MGP_CASTEiJ_G0009084.1 mouse_genomes_project X 125258751 125258859 + Mir764 miRNA miRNA MGP_CASTEiJ_T0097246.1 MGP_CASTEiJ_G0034934.1 mouse_genomes_project X 83407727 83430572 - MGP_CASTEiJ_P0097246 Ercc6l protein_coding protein_coding MGP_CASTEiJ_T0096957.1 MGP_CASTEiJ_G0034866.1 mouse_genomes_project X 74678995 74680934 + Arx protein_coding retained_intron MGP_CASTEiJ_T0096958.1 MGP_CASTEiJ_G0034866.1 mouse_genomes_project X 74679046 74690845 + MGP_CASTEiJ_P0096958 Arx protein_coding protein_coding MGP_CASTEiJ_T0096959.1 MGP_CASTEiJ_G0034866.1 mouse_genomes_project X 74679060 74690551 + MGP_CASTEiJ_P0096959 Arx protein_coding protein_coding MGP_CASTEiJ_T0096960.1 MGP_CASTEiJ_G0034866.1 mouse_genomes_project X 74679132 74685048 + MGP_CASTEiJ_P0096960 Arx protein_coding unknown_likely_coding MGP_CASTEiJ_T0015836.1 MGP_CASTEiJ_G0013999.1 mouse_genomes_project X 69426537 69427073 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096291.1 MGP_CASTEiJ_G0034687.1 mouse_genomes_project X 36292813 36317362 - MGP_CASTEiJ_P0096291 Mospd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097375.1 MGP_CASTEiJ_G0034976.1 mouse_genomes_project X 88650521 88689380 + MGP_CASTEiJ_P0097375 Gpr174 protein_coding protein_coding MGP_CASTEiJ_T0097376.1 MGP_CASTEiJ_G0034976.1 mouse_genomes_project X 88650552 88689975 + MGP_CASTEiJ_P0097376 Gpr174 protein_coding protein_coding MGP_CASTEiJ_T0097377.1 MGP_CASTEiJ_G0034976.1 mouse_genomes_project X 88650639 88688514 + MGP_CASTEiJ_P0097377 Gpr174 protein_coding protein_coding MGP_CASTEiJ_T0097378.1 MGP_CASTEiJ_G0034976.1 mouse_genomes_project X 88650975 88688527 + MGP_CASTEiJ_P0097378 Gpr174 protein_coding protein_coding MGP_CASTEiJ_T0097379.1 MGP_CASTEiJ_G0034976.1 mouse_genomes_project X 88663394 88685527 + Gpr174 protein_coding processed_transcript MGP_CASTEiJ_T0097380.1 MGP_CASTEiJ_G0034976.1 mouse_genomes_project X 88677698 88685658 + Gpr174 protein_coding processed_transcript MGP_CASTEiJ_T0097381.1 MGP_CASTEiJ_G0034976.1 mouse_genomes_project X 88677698 88689977 + MGP_CASTEiJ_P0097381 Gpr174 protein_coding protein_coding MGP_CASTEiJ_T0015904.1 MGP_CASTEiJ_G0014067.1 mouse_genomes_project X 80896099 80896393 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016105.1 MGP_CASTEiJ_G0014268.1 mouse_genomes_project X 119668569 119669352 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096813.1 MGP_CASTEiJ_G0034817.1 mouse_genomes_project X 56628302 56629671 + MGP_CASTEiJ_P0096813 protein_coding protein_coding MGP_CASTEiJ_T0097755.1 MGP_CASTEiJ_G0035105.1 mouse_genomes_project X 119198047 119203113 - MGP_CASTEiJ_P0097755 Tex13 protein_coding protein_coding MGP_CASTEiJ_T0097756.1 MGP_CASTEiJ_G0035105.1 mouse_genomes_project X 119199009 119200587 - Tex13 protein_coding retained_intron MGP_CASTEiJ_T0010891.1 MGP_CASTEiJ_G0009079.1 mouse_genomes_project X 118683046 118683111 + Mir3475 miRNA miRNA MGP_CASTEiJ_T0016190.1 MGP_CASTEiJ_G0014353.1 mouse_genomes_project X 135013617 135013951 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011427.1 MGP_CASTEiJ_G0009615.1 mouse_genomes_project X 50244975 50245031 + Gm27979 misc_RNA misc_RNA MGP_CASTEiJ_T0015637.1 MGP_CASTEiJ_G0013800.1 mouse_genomes_project X 20448278 20451358 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017856.1 MGP_CASTEiJ_G0015088.1 mouse_genomes_project X 15379198 15408169 + A230072C01Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017857.1 MGP_CASTEiJ_G0015088.1 mouse_genomes_project X 15379627 15408183 + A230072C01Rik processed_transcript processed_transcript MGP_CASTEiJ_T0097655.1 MGP_CASTEiJ_G0035077.1 mouse_genomes_project X 115195483 115206254 - MGP_CASTEiJ_P0097655 protein_coding protein_coding MGP_CASTEiJ_T0015923.1 MGP_CASTEiJ_G0014086.1 mouse_genomes_project X 84370227 84370474 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009207.1 MGP_CASTEiJ_G0007397.1 mouse_genomes_project X 144008533 144037999 + Gm1720 lincRNA lincRNA MGP_CASTEiJ_T0096457.1 MGP_CASTEiJ_G0034748.1 mouse_genomes_project X 52976360 53054419 - MGP_CASTEiJ_P0096457 Cd99l2 protein_coding protein_coding MGP_CASTEiJ_T0096458.1 MGP_CASTEiJ_G0034748.1 mouse_genomes_project X 52976360 53054214 - MGP_CASTEiJ_P0096458 Cd99l2 protein_coding protein_coding MGP_CASTEiJ_T0096459.1 MGP_CASTEiJ_G0034748.1 mouse_genomes_project X 52978921 53054419 - MGP_CASTEiJ_P0096459 Cd99l2 protein_coding protein_coding MGP_CASTEiJ_T0096460.1 MGP_CASTEiJ_G0034748.1 mouse_genomes_project X 52996170 53054218 - Cd99l2 protein_coding retained_intron MGP_CASTEiJ_T0096461.1 MGP_CASTEiJ_G0034748.1 mouse_genomes_project X 53053474 53054174 - Cd99l2 protein_coding processed_transcript MGP_CASTEiJ_T0015780.1 MGP_CASTEiJ_G0013943.1 mouse_genomes_project X 55619305 55619974 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097488.1 MGP_CASTEiJ_G0035019.1 mouse_genomes_project X 111686155 111793643 - MGP_CASTEiJ_P0097488 Pcdh19 protein_coding protein_coding MGP_CASTEiJ_T0097489.1 MGP_CASTEiJ_G0035019.1 mouse_genomes_project X 111686170 111791921 - MGP_CASTEiJ_P0097489 Pcdh19 protein_coding protein_coding MGP_CASTEiJ_T0097490.1 MGP_CASTEiJ_G0035019.1 mouse_genomes_project X 111686174 111790550 - MGP_CASTEiJ_P0097490 Pcdh19 protein_coding protein_coding MGP_CASTEiJ_T0097491.1 MGP_CASTEiJ_G0035019.1 mouse_genomes_project X 111686175 111691306 - MGP_CASTEiJ_P0097491 Pcdh19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097492.1 MGP_CASTEiJ_G0035019.1 mouse_genomes_project X 111786022 111789648 - Pcdh19 protein_coding processed_transcript MGP_CASTEiJ_T0097458.1 MGP_CASTEiJ_G0035005.1 mouse_genomes_project X 97405471 97430317 + MGP_CASTEiJ_P0097458 Cpxcr1 protein_coding protein_coding MGP_CASTEiJ_T0096805.1 MGP_CASTEiJ_G0034811.1 mouse_genomes_project X 56239546 56240482 - MGP_CASTEiJ_P0096805 Olfr1326-ps1 protein_coding protein_coding MGP_CASTEiJ_T0097664.1 MGP_CASTEiJ_G0035080.1 mouse_genomes_project X 115249323 115249619 + MGP_CASTEiJ_P0097664 Vma21-ps protein_coding protein_coding MGP_CASTEiJ_T0015802.1 MGP_CASTEiJ_G0013965.1 mouse_genomes_project X 59946340 59951262 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098705.1 MGP_CASTEiJ_G0035636.1 mouse_genomes_project X 139595738 139595866 + Gm27490 rRNA rRNA MGP_CASTEiJ_T0015931.1 MGP_CASTEiJ_G0014094.1 mouse_genomes_project X 84667336 84668204 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015785.1 MGP_CASTEiJ_G0013948.1 mouse_genomes_project X 56236197 56236946 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015893.1 MGP_CASTEiJ_G0014056.1 mouse_genomes_project X 78184124 78186489 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095809.1 MGP_CASTEiJ_G0034533.1 mouse_genomes_project X 3856089 3862070 - MGP_CASTEiJ_P0095809 Gm14862 protein_coding protein_coding MGP_CASTEiJ_T0096670.1 MGP_CASTEiJ_G0034794.1 mouse_genomes_project X 55779939 55807731 - MGP_CASTEiJ_P0096670 Tex28 protein_coding protein_coding MGP_CASTEiJ_T0097298.1 MGP_CASTEiJ_G0034957.1 mouse_genomes_project X 86478325 86483969 + MGP_CASTEiJ_P0097298 Pbdc1 protein_coding protein_coding MGP_CASTEiJ_T0097299.1 MGP_CASTEiJ_G0034957.1 mouse_genomes_project X 86478330 86516457 + MGP_CASTEiJ_P0097299 Pbdc1 protein_coding protein_coding MGP_CASTEiJ_T0097300.1 MGP_CASTEiJ_G0034957.1 mouse_genomes_project X 86478344 86481736 + Pbdc1 protein_coding retained_intron MGP_CASTEiJ_T0095841.1 MGP_CASTEiJ_G0034544.1 mouse_genomes_project X 5298315 5299776 + Mid1ip1 protein_coding processed_transcript MGP_CASTEiJ_T0095842.1 MGP_CASTEiJ_G0034544.1 mouse_genomes_project X 5298321 5301714 + MGP_CASTEiJ_P0095842 Mid1ip1 protein_coding protein_coding MGP_CASTEiJ_T0095843.1 MGP_CASTEiJ_G0034544.1 mouse_genomes_project X 5300718 5303020 + MGP_CASTEiJ_P0095843 Mid1ip1 protein_coding protein_coding MGP_CASTEiJ_T0095844.1 MGP_CASTEiJ_G0034544.1 mouse_genomes_project X 5300718 5303020 + MGP_CASTEiJ_P0095844 Mid1ip1 protein_coding protein_coding MGP_CASTEiJ_T0095845.1 MGP_CASTEiJ_G0034544.1 mouse_genomes_project X 5300796 5301714 + MGP_CASTEiJ_P0095845 Mid1ip1 protein_coding protein_coding MGP_CASTEiJ_T0096889.1 MGP_CASTEiJ_G0034842.1 mouse_genomes_project X 59737196 59743425 + MGP_CASTEiJ_P0096889 protein_coding protein_coding MGP_CASTEiJ_T0102638.1 MGP_CASTEiJ_G0039362.1 mouse_genomes_project X 67782544 67783585 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015574.1 MGP_CASTEiJ_G0013737.1 mouse_genomes_project X 6503920 6504361 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098202.1 MGP_CASTEiJ_G0035211.1 mouse_genomes_project X 141608096 141679356 - MGP_CASTEiJ_P0098202 Bmx protein_coding protein_coding MGP_CASTEiJ_T0098203.1 MGP_CASTEiJ_G0035211.1 mouse_genomes_project X 141608609 141671326 - MGP_CASTEiJ_P0098203 Bmx protein_coding protein_coding MGP_CASTEiJ_T0005434.1 MGP_CASTEiJ_G0004589.1 mouse_genomes_project X 32347528 32442092 - Gm14697 antisense antisense MGP_CASTEiJ_T0015628.1 MGP_CASTEiJ_G0013791.1 mouse_genomes_project X 18196886 18198102 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100169.1 MGP_CASTEiJ_G0037082.1 mouse_genomes_project X 2667278 2667380 + Gm22083 snRNA snRNA MGP_CASTEiJ_T0009132.1 MGP_CASTEiJ_G0007350.1 mouse_genomes_project X 10498780 10501560 - lincRNA lincRNA MGP_CASTEiJ_T0098007.1 MGP_CASTEiJ_G0035163.1 mouse_genomes_project X 131100929 131118570 + MGP_CASTEiJ_P0098007 2210013O21Rik protein_coding protein_coding MGP_CASTEiJ_T0098008.1 MGP_CASTEiJ_G0035163.1 mouse_genomes_project X 131100949 131119226 + MGP_CASTEiJ_P0098008 2210013O21Rik protein_coding protein_coding MGP_CASTEiJ_T0098009.1 MGP_CASTEiJ_G0035163.1 mouse_genomes_project X 131100966 131106522 + MGP_CASTEiJ_P0098009 2210013O21Rik protein_coding protein_coding MGP_CASTEiJ_T0098010.1 MGP_CASTEiJ_G0035163.1 mouse_genomes_project X 131101278 131118428 + 2210013O21Rik protein_coding processed_transcript MGP_CASTEiJ_T0016233.1 MGP_CASTEiJ_G0014396.1 mouse_genomes_project X 145150130 145151425 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016122.1 MGP_CASTEiJ_G0014285.1 mouse_genomes_project X 120956741 120957152 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097653.1 MGP_CASTEiJ_G0035075.1 mouse_genomes_project X 115194446 115207451 - MGP_CASTEiJ_P0097653 protein_coding protein_coding MGP_CASTEiJ_T0016220.1 MGP_CASTEiJ_G0014383.1 mouse_genomes_project X 141876096 141878243 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015876.1 MGP_CASTEiJ_G0014039.1 mouse_genomes_project X 75775959 75776660 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015661.1 MGP_CASTEiJ_G0013824.1 mouse_genomes_project X 26101801 26102192 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010826.1 MGP_CASTEiJ_G0009014.1 mouse_genomes_project X 35986556 35986647 - Mir450-1 miRNA miRNA MGP_CASTEiJ_T0102632.1 MGP_CASTEiJ_G0039356.1 mouse_genomes_project X 57131306 57150833 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100219.1 MGP_CASTEiJ_G0037132.1 mouse_genomes_project X 97298768 97298932 + Gm24624 snRNA snRNA MGP_CASTEiJ_T0015960.1 MGP_CASTEiJ_G0014123.1 mouse_genomes_project X 88166871 88167277 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095784.1 MGP_CASTEiJ_G0034526.1 mouse_genomes_project X 2777605 2785752 - MGP_CASTEiJ_P0095784 Ebp protein_coding protein_coding MGP_CASTEiJ_T0095785.1 MGP_CASTEiJ_G0034526.1 mouse_genomes_project X 2777607 2779465 - Ebp protein_coding retained_intron MGP_CASTEiJ_T0095786.1 MGP_CASTEiJ_G0034526.1 mouse_genomes_project X 2779038 2785640 - MGP_CASTEiJ_P0095786 Ebp protein_coding protein_coding MGP_CASTEiJ_T0095787.1 MGP_CASTEiJ_G0034526.1 mouse_genomes_project X 2782159 2785138 - Ebp protein_coding retained_intron MGP_CASTEiJ_T0005446.1 MGP_CASTEiJ_G0004599.1 mouse_genomes_project X 54978299 54989673 - Gm26726 antisense antisense MGP_CASTEiJ_T0097883.1 MGP_CASTEiJ_G0035138.1 mouse_genomes_project X 128174577 128182482 - MGP_CASTEiJ_P0097883 Maged2 protein_coding protein_coding MGP_CASTEiJ_T0097884.1 MGP_CASTEiJ_G0035138.1 mouse_genomes_project X 128174628 128181169 - Maged2 protein_coding retained_intron MGP_CASTEiJ_T0097885.1 MGP_CASTEiJ_G0035138.1 mouse_genomes_project X 128174628 128181844 - MGP_CASTEiJ_P0097885 Maged2 protein_coding protein_coding MGP_CASTEiJ_T0097886.1 MGP_CASTEiJ_G0035138.1 mouse_genomes_project X 128174631 128182406 - MGP_CASTEiJ_P0097886 Maged2 protein_coding protein_coding MGP_CASTEiJ_T0097887.1 MGP_CASTEiJ_G0035138.1 mouse_genomes_project X 128174924 128180916 - MGP_CASTEiJ_P0097887 Maged2 protein_coding protein_coding MGP_CASTEiJ_T0097888.1 MGP_CASTEiJ_G0035138.1 mouse_genomes_project X 128179080 128181215 - MGP_CASTEiJ_P0097888 Maged2 protein_coding protein_coding MGP_CASTEiJ_T0097889.1 MGP_CASTEiJ_G0035138.1 mouse_genomes_project X 128179097 128181291 - MGP_CASTEiJ_P0097889 Maged2 protein_coding protein_coding MGP_CASTEiJ_T0097890.1 MGP_CASTEiJ_G0035138.1 mouse_genomes_project X 128179306 128180663 - Maged2 protein_coding processed_transcript MGP_CASTEiJ_T0097891.1 MGP_CASTEiJ_G0035138.1 mouse_genomes_project X 128179344 128182418 - MGP_CASTEiJ_P0097891 Maged2 protein_coding protein_coding MGP_CASTEiJ_T0097892.1 MGP_CASTEiJ_G0035138.1 mouse_genomes_project X 128180076 128181159 - MGP_CASTEiJ_P0097892 Maged2 protein_coding protein_coding MGP_CASTEiJ_T0096688.1 MGP_CASTEiJ_G0034797.1 mouse_genomes_project X 55898314 55901511 + MGP_CASTEiJ_P0096688 Emd protein_coding protein_coding MGP_CASTEiJ_T0096689.1 MGP_CASTEiJ_G0034797.1 mouse_genomes_project X 55898379 55900985 + MGP_CASTEiJ_P0096689 Emd protein_coding protein_coding MGP_CASTEiJ_T0096690.1 MGP_CASTEiJ_G0034797.1 mouse_genomes_project X 55898388 55899313 + Emd protein_coding processed_transcript MGP_CASTEiJ_T0096691.1 MGP_CASTEiJ_G0034797.1 mouse_genomes_project X 55898437 55904678 + MGP_CASTEiJ_P0096691 Emd protein_coding protein_coding MGP_CASTEiJ_T0096692.1 MGP_CASTEiJ_G0034797.1 mouse_genomes_project X 55898443 55900947 + MGP_CASTEiJ_P0096692 Emd protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097351.1 MGP_CASTEiJ_G0034968.1 mouse_genomes_project X 87577270 87591285 - MGP_CASTEiJ_P0097351 Taf9b protein_coding protein_coding MGP_CASTEiJ_T0097352.1 MGP_CASTEiJ_G0034968.1 mouse_genomes_project X 87577270 87590034 - MGP_CASTEiJ_P0097352 Taf9b protein_coding protein_coding MGP_CASTEiJ_T0097353.1 MGP_CASTEiJ_G0034968.1 mouse_genomes_project X 87588475 87590880 - MGP_CASTEiJ_P0097353 Taf9b protein_coding protein_coding MGP_CASTEiJ_T0015889.1 MGP_CASTEiJ_G0014052.1 mouse_genomes_project X 76760895 76762992 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015575.1 MGP_CASTEiJ_G0013738.1 mouse_genomes_project X 6553911 6554110 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101697.1 MGP_CASTEiJ_G0038519.1 mouse_genomes_project X 108673830 108674539 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0010889.1 MGP_CASTEiJ_G0009077.1 mouse_genomes_project X 114038326 114038430 - Mir1970 miRNA miRNA MGP_CASTEiJ_T0101450.1 MGP_CASTEiJ_G0038363.1 mouse_genomes_project X 94939464 94939588 - Gm23985 snoRNA snoRNA MGP_CASTEiJ_T0096222.1 MGP_CASTEiJ_G0034662.1 mouse_genomes_project X 31738537 31750554 + MGP_CASTEiJ_P0096222 Rbmx2 protein_coding protein_coding MGP_CASTEiJ_T0096223.1 MGP_CASTEiJ_G0034662.1 mouse_genomes_project X 31745263 31748183 + Rbmx2 protein_coding processed_transcript MGP_CASTEiJ_T0101460.1 MGP_CASTEiJ_G0038373.1 mouse_genomes_project X 113581487 113581601 - snoRNA snoRNA MGP_CASTEiJ_T0009142.1 MGP_CASTEiJ_G0007357.1 mouse_genomes_project X 22043924 22070770 - Gm14565 lincRNA lincRNA MGP_CASTEiJ_T0100171.1 MGP_CASTEiJ_G0037084.1 mouse_genomes_project X 6485869 6485976 + Gm26314 snRNA snRNA MGP_CASTEiJ_T0015756.1 MGP_CASTEiJ_G0013919.1 mouse_genomes_project X 48605907 48606434 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015552.1 MGP_CASTEiJ_G0013715.1 mouse_genomes_project X 155169 157742 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015636.1 MGP_CASTEiJ_G0013799.1 mouse_genomes_project X 20239486 20239643 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015749.1 MGP_CASTEiJ_G0013912.1 mouse_genomes_project X 46764048 46764298 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101476.1 MGP_CASTEiJ_G0038389.1 mouse_genomes_project X 140117549 140117668 + Gm23786 snoRNA snoRNA MGP_CASTEiJ_T0098049.1 MGP_CASTEiJ_G0035177.1 mouse_genomes_project X 135053476 135107053 + MGP_CASTEiJ_P0098049 Smpx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098050.1 MGP_CASTEiJ_G0035177.1 mouse_genomes_project X 135053476 135057582 + MGP_CASTEiJ_P0098050 Smpx protein_coding protein_coding MGP_CASTEiJ_T0098051.1 MGP_CASTEiJ_G0035177.1 mouse_genomes_project X 135053539 135107051 + MGP_CASTEiJ_P0098051 Smpx protein_coding protein_coding MGP_CASTEiJ_T0098052.1 MGP_CASTEiJ_G0035177.1 mouse_genomes_project X 135053693 135107051 + MGP_CASTEiJ_P0098052 Smpx protein_coding protein_coding MGP_CASTEiJ_T0098053.1 MGP_CASTEiJ_G0035177.1 mouse_genomes_project X 135053826 135106676 + MGP_CASTEiJ_P0098053 Smpx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098054.1 MGP_CASTEiJ_G0035177.1 mouse_genomes_project X 135057165 135106703 + MGP_CASTEiJ_P0098054 Smpx protein_coding protein_coding MGP_CASTEiJ_T0098055.1 MGP_CASTEiJ_G0035177.1 mouse_genomes_project X 135070706 135106673 + Smpx protein_coding retained_intron MGP_CASTEiJ_T0098056.1 MGP_CASTEiJ_G0035177.1 mouse_genomes_project X 135076809 135106745 + Smpx protein_coding retained_intron MGP_CASTEiJ_T0096572.1 MGP_CASTEiJ_G0034785.1 mouse_genomes_project X 55456220 55473786 - MGP_CASTEiJ_P0096572 L1cam protein_coding protein_coding MGP_CASTEiJ_T0096573.1 MGP_CASTEiJ_G0034785.1 mouse_genomes_project X 55456398 55486505 - MGP_CASTEiJ_P0096573 L1cam protein_coding protein_coding MGP_CASTEiJ_T0096574.1 MGP_CASTEiJ_G0034785.1 mouse_genomes_project X 55457132 55473685 - MGP_CASTEiJ_P0096574 L1cam protein_coding protein_coding MGP_CASTEiJ_T0096575.1 MGP_CASTEiJ_G0034785.1 mouse_genomes_project X 55457359 55458871 - L1cam protein_coding retained_intron MGP_CASTEiJ_T0096576.1 MGP_CASTEiJ_G0034785.1 mouse_genomes_project X 55457465 55459239 - MGP_CASTEiJ_P0096576 L1cam protein_coding protein_coding MGP_CASTEiJ_T0096577.1 MGP_CASTEiJ_G0034785.1 mouse_genomes_project X 55458901 55460141 - L1cam protein_coding retained_intron MGP_CASTEiJ_T0096578.1 MGP_CASTEiJ_G0034785.1 mouse_genomes_project X 55459155 55459891 - L1cam protein_coding retained_intron MGP_CASTEiJ_T0096579.1 MGP_CASTEiJ_G0034785.1 mouse_genomes_project X 55459958 55461110 - L1cam protein_coding retained_intron MGP_CASTEiJ_T0096580.1 MGP_CASTEiJ_G0034785.1 mouse_genomes_project X 55461549 55462632 - L1cam protein_coding retained_intron MGP_CASTEiJ_T0096581.1 MGP_CASTEiJ_G0034785.1 mouse_genomes_project X 55461902 55463600 - MGP_CASTEiJ_P0096581 L1cam protein_coding protein_coding MGP_CASTEiJ_T0096582.1 MGP_CASTEiJ_G0034785.1 mouse_genomes_project X 55466184 55486460 - L1cam protein_coding retained_intron MGP_CASTEiJ_T0096583.1 MGP_CASTEiJ_G0034785.1 mouse_genomes_project X 55469575 55503617 - L1cam protein_coding processed_transcript MGP_CASTEiJ_T0096584.1 MGP_CASTEiJ_G0034785.1 mouse_genomes_project X 55469652 55474196 - MGP_CASTEiJ_P0096584 L1cam protein_coding protein_coding MGP_CASTEiJ_T0097683.1 MGP_CASTEiJ_G0035085.1 mouse_genomes_project X 117202839 117320015 + MGP_CASTEiJ_P0097683 Nrk protein_coding protein_coding MGP_CASTEiJ_T0097684.1 MGP_CASTEiJ_G0035085.1 mouse_genomes_project X 117202840 117262916 + Nrk protein_coding processed_transcript MGP_CASTEiJ_T0097685.1 MGP_CASTEiJ_G0035085.1 mouse_genomes_project X 117202840 117321463 + MGP_CASTEiJ_P0097685 Nrk protein_coding protein_coding MGP_CASTEiJ_T0097686.1 MGP_CASTEiJ_G0035085.1 mouse_genomes_project X 117202840 117320731 + MGP_CASTEiJ_P0097686 Nrk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097687.1 MGP_CASTEiJ_G0035085.1 mouse_genomes_project X 117286747 117295012 + Nrk protein_coding retained_intron MGP_CASTEiJ_T0096472.1 MGP_CASTEiJ_G0034753.1 mouse_genomes_project X 53545395 53549417 + MGP_CASTEiJ_P0096472 Prrg3 protein_coding protein_coding MGP_CASTEiJ_T0096473.1 MGP_CASTEiJ_G0034753.1 mouse_genomes_project X 53545396 53552861 + MGP_CASTEiJ_P0096473 Prrg3 protein_coding protein_coding MGP_CASTEiJ_T0096474.1 MGP_CASTEiJ_G0034753.1 mouse_genomes_project X 53545753 53555515 + MGP_CASTEiJ_P0096474 Prrg3 protein_coding protein_coding MGP_CASTEiJ_T0097587.1 MGP_CASTEiJ_G0035046.1 mouse_genomes_project X 113488234 113494063 + MGP_CASTEiJ_P0097587 protein_coding protein_coding MGP_CASTEiJ_T0016000.1 MGP_CASTEiJ_G0014163.1 mouse_genomes_project X 96385487 96386120 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097063.1 MGP_CASTEiJ_G0034892.1 mouse_genomes_project X 78256348 78257167 - MGP_CASTEiJ_P0097063 1700084M14Rik protein_coding protein_coding MGP_CASTEiJ_T0015837.1 MGP_CASTEiJ_G0014000.1 mouse_genomes_project X 69777254 69777595 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101426.1 MGP_CASTEiJ_G0038339.1 mouse_genomes_project X 20171351 20171438 + Gm23613 snoRNA snoRNA MGP_CASTEiJ_T0098299.1 MGP_CASTEiJ_G0035235.1 mouse_genomes_project X 146646542 146709588 - MGP_CASTEiJ_P0098299 Hccs protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098300.1 MGP_CASTEiJ_G0035235.1 mouse_genomes_project X 146700761 146709510 - MGP_CASTEiJ_P0098300 Hccs protein_coding protein_coding MGP_CASTEiJ_T0098301.1 MGP_CASTEiJ_G0035235.1 mouse_genomes_project X 146700761 146709496 - MGP_CASTEiJ_P0098301 Hccs protein_coding protein_coding MGP_CASTEiJ_T0017934.1 MGP_CASTEiJ_G0015115.1 mouse_genomes_project X 146709837 146754950 + Gm15246 processed_transcript processed_transcript MGP_CASTEiJ_T0017935.1 MGP_CASTEiJ_G0015115.1 mouse_genomes_project X 146709837 146746923 + Gm15246 processed_transcript processed_transcript MGP_CASTEiJ_T0096636.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55628804 55639776 - MGP_CASTEiJ_P0096636 Irak1 protein_coding protein_coding MGP_CASTEiJ_T0096637.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55628808 55639773 - MGP_CASTEiJ_P0096637 Irak1 protein_coding protein_coding MGP_CASTEiJ_T0096638.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55628816 55639773 - MGP_CASTEiJ_P0096638 Irak1 protein_coding protein_coding MGP_CASTEiJ_T0096639.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55628816 55639773 - MGP_CASTEiJ_P0096639 Irak1 protein_coding protein_coding MGP_CASTEiJ_T0096640.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55629691 55639684 - Irak1 protein_coding retained_intron MGP_CASTEiJ_T0096641.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55629691 55639684 - Irak1 protein_coding retained_intron MGP_CASTEiJ_T0096642.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55629857 55639771 - MGP_CASTEiJ_P0096642 Irak1 protein_coding protein_coding MGP_CASTEiJ_T0096643.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55630252 55633471 - MGP_CASTEiJ_P0096643 Irak1 protein_coding protein_coding MGP_CASTEiJ_T0096644.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55630266 55635806 - MGP_CASTEiJ_P0096644 Irak1 protein_coding protein_coding MGP_CASTEiJ_T0096645.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55630334 55639603 - MGP_CASTEiJ_P0096645 Irak1 protein_coding protein_coding MGP_CASTEiJ_T0096646.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55630334 55639603 - MGP_CASTEiJ_P0096646 Irak1 protein_coding protein_coding MGP_CASTEiJ_T0096647.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55631442 55636852 - MGP_CASTEiJ_P0096647 Irak1 protein_coding protein_coding MGP_CASTEiJ_T0096648.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55632266 55638360 - MGP_CASTEiJ_P0096648 Irak1 protein_coding protein_coding MGP_CASTEiJ_T0096649.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55636863 55638515 - Irak1 protein_coding retained_intron MGP_CASTEiJ_T0096650.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55636863 55638955 - MGP_CASTEiJ_P0096650 Irak1 protein_coding protein_coding MGP_CASTEiJ_T0096651.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55638050 55639037 - MGP_CASTEiJ_P0096651 Irak1 protein_coding protein_coding MGP_CASTEiJ_T0096652.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55638092 55638808 - MGP_CASTEiJ_P0096652 Irak1 protein_coding protein_coding MGP_CASTEiJ_T0096653.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55638101 55639585 - Irak1 protein_coding processed_transcript MGP_CASTEiJ_T0096654.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55638481 55639666 - Irak1 protein_coding retained_intron MGP_CASTEiJ_T0096655.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55638496 55639234 - Irak1 protein_coding retained_intron MGP_CASTEiJ_T0096656.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55638609 55639366 - Irak1 protein_coding processed_transcript MGP_CASTEiJ_T0096657.1 MGP_CASTEiJ_G0034791.1 mouse_genomes_project X 55638958 55639689 - Irak1 protein_coding retained_intron MGP_CASTEiJ_T0100201.1 MGP_CASTEiJ_G0037114.1 mouse_genomes_project X 59160641 59160814 + Gm23121 snRNA snRNA MGP_CASTEiJ_T0097409.1 MGP_CASTEiJ_G0034988.1 mouse_genomes_project X 92357319 92369926 + MGP_CASTEiJ_P0097409 Cylc1 protein_coding protein_coding MGP_CASTEiJ_T0015622.1 MGP_CASTEiJ_G0013785.1 mouse_genomes_project X 16619491 16619845 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096184.1 MGP_CASTEiJ_G0034653.1 mouse_genomes_project X 31190628 31227079 - MGP_CASTEiJ_P0096184 Zdhhc9 protein_coding protein_coding MGP_CASTEiJ_T0096185.1 MGP_CASTEiJ_G0034653.1 mouse_genomes_project X 31190628 31226888 - MGP_CASTEiJ_P0096185 Zdhhc9 protein_coding protein_coding MGP_CASTEiJ_T0096186.1 MGP_CASTEiJ_G0034653.1 mouse_genomes_project X 31199742 31226866 - Zdhhc9 protein_coding retained_intron MGP_CASTEiJ_T0096187.1 MGP_CASTEiJ_G0034653.1 mouse_genomes_project X 31208033 31226803 - Zdhhc9 protein_coding retained_intron MGP_CASTEiJ_T0096188.1 MGP_CASTEiJ_G0034653.1 mouse_genomes_project X 31219889 31226529 - Zdhhc9 protein_coding processed_transcript MGP_CASTEiJ_T0096189.1 MGP_CASTEiJ_G0034653.1 mouse_genomes_project X 31224855 31226859 - Zdhhc9 protein_coding processed_transcript MGP_CASTEiJ_T0096943.1 MGP_CASTEiJ_G0034856.1 mouse_genomes_project X 67383210 67386356 + MGP_CASTEiJ_P0096943 Samt3 protein_coding protein_coding MGP_CASTEiJ_T0016090.1 MGP_CASTEiJ_G0014253.1 mouse_genomes_project X 115881959 115885388 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097772.1 MGP_CASTEiJ_G0035113.1 mouse_genomes_project X 120197417 120198012 - MGP_CASTEiJ_P0097772 protein_coding protein_coding MGP_CASTEiJ_T0015747.1 MGP_CASTEiJ_G0013910.1 mouse_genomes_project X 46532825 46534153 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096883.1 MGP_CASTEiJ_G0034838.1 mouse_genomes_project X 59345751 59380301 - MGP_CASTEiJ_P0096883 Prkx protein_coding protein_coding MGP_CASTEiJ_T0096884.1 MGP_CASTEiJ_G0034838.1 mouse_genomes_project X 59355788 59380011 - MGP_CASTEiJ_P0096884 Prkx protein_coding protein_coding MGP_CASTEiJ_T0096051.1 MGP_CASTEiJ_G0034609.1 mouse_genomes_project X 20508225 20528281 - MGP_CASTEiJ_P0096051 Upf3b protein_coding protein_coding MGP_CASTEiJ_T0096052.1 MGP_CASTEiJ_G0034609.1 mouse_genomes_project X 20512224 20522566 - MGP_CASTEiJ_P0096052 Upf3b protein_coding protein_coding MGP_CASTEiJ_T0096053.1 MGP_CASTEiJ_G0034609.1 mouse_genomes_project X 20515491 20528281 - Upf3b protein_coding processed_transcript MGP_CASTEiJ_T0096851.1 MGP_CASTEiJ_G0034824.1 mouse_genomes_project X 57084493 57090597 - MGP_CASTEiJ_P0096851 Mtcp1 protein_coding protein_coding MGP_CASTEiJ_T0096852.1 MGP_CASTEiJ_G0034824.1 mouse_genomes_project X 57084699 57090472 - Mtcp1 protein_coding processed_transcript MGP_CASTEiJ_T0096853.1 MGP_CASTEiJ_G0034824.1 mouse_genomes_project X 57084826 57090642 - MGP_CASTEiJ_P0096853 Mtcp1 protein_coding protein_coding MGP_CASTEiJ_T0096854.1 MGP_CASTEiJ_G0034824.1 mouse_genomes_project X 57087225 57090622 - Mtcp1 protein_coding retained_intron MGP_CASTEiJ_T0015670.1 MGP_CASTEiJ_G0013833.1 mouse_genomes_project X 28472274 28475180 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096376.1 MGP_CASTEiJ_G0034720.1 mouse_genomes_project X 41737781 41864394 - MGP_CASTEiJ_P0096376 Mcf2 protein_coding protein_coding MGP_CASTEiJ_T0096377.1 MGP_CASTEiJ_G0034720.1 mouse_genomes_project X 41737781 41829667 - MGP_CASTEiJ_P0096377 Mcf2 protein_coding protein_coding MGP_CASTEiJ_T0096378.1 MGP_CASTEiJ_G0034720.1 mouse_genomes_project X 41737784 41829611 - MGP_CASTEiJ_P0096378 Mcf2 protein_coding protein_coding MGP_CASTEiJ_T0098079.1 MGP_CASTEiJ_G0035184.1 mouse_genomes_project X 136863701 136891242 + MGP_CASTEiJ_P0098079 A830080D01Rik protein_coding protein_coding MGP_CASTEiJ_T0098080.1 MGP_CASTEiJ_G0035184.1 mouse_genomes_project X 136870995 136937140 + MGP_CASTEiJ_P0098080 A830080D01Rik protein_coding protein_coding MGP_CASTEiJ_T0098081.1 MGP_CASTEiJ_G0035184.1 mouse_genomes_project X 136871023 136918202 + MGP_CASTEiJ_P0098081 A830080D01Rik protein_coding protein_coding MGP_CASTEiJ_T0098082.1 MGP_CASTEiJ_G0035184.1 mouse_genomes_project X 136880104 136891292 + MGP_CASTEiJ_P0098082 A830080D01Rik protein_coding protein_coding MGP_CASTEiJ_T0098083.1 MGP_CASTEiJ_G0035184.1 mouse_genomes_project X 136907256 136936261 + A830080D01Rik protein_coding processed_transcript MGP_CASTEiJ_T0098084.1 MGP_CASTEiJ_G0035184.1 mouse_genomes_project X 136907943 136915498 + A830080D01Rik protein_coding retained_intron MGP_CASTEiJ_T0097396.1 MGP_CASTEiJ_G0034983.1 mouse_genomes_project X 90079475 90182401 - MGP_CASTEiJ_P0097396 Brwd3 protein_coding protein_coding MGP_CASTEiJ_T0097397.1 MGP_CASTEiJ_G0034983.1 mouse_genomes_project X 90085022 90182425 - MGP_CASTEiJ_P0097397 Brwd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097398.1 MGP_CASTEiJ_G0034983.1 mouse_genomes_project X 90085022 90182425 - MGP_CASTEiJ_P0097398 Brwd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097399.1 MGP_CASTEiJ_G0034983.1 mouse_genomes_project X 90095927 90180886 - MGP_CASTEiJ_P0097399 Brwd3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097400.1 MGP_CASTEiJ_G0034983.1 mouse_genomes_project X 90150286 90182393 - Brwd3 protein_coding retained_intron MGP_CASTEiJ_T0097401.1 MGP_CASTEiJ_G0034983.1 mouse_genomes_project X 90169215 90182399 - MGP_CASTEiJ_P0097401 Brwd3 protein_coding protein_coding MGP_CASTEiJ_T0015640.1 MGP_CASTEiJ_G0013803.1 mouse_genomes_project X 22218022 22219580 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102645.1 MGP_CASTEiJ_G0039369.1 mouse_genomes_project X 83997343 83999228 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0016069.1 MGP_CASTEiJ_G0014232.1 mouse_genomes_project X 113052246 113052879 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098293.1 MGP_CASTEiJ_G0035234.1 mouse_genomes_project X 146568359 146579431 - MGP_CASTEiJ_P0098293 Amelx protein_coding protein_coding MGP_CASTEiJ_T0098294.1 MGP_CASTEiJ_G0035234.1 mouse_genomes_project X 146572277 146579431 - Amelx protein_coding processed_transcript MGP_CASTEiJ_T0098295.1 MGP_CASTEiJ_G0035234.1 mouse_genomes_project X 146572277 146579431 - MGP_CASTEiJ_P0098295 Amelx protein_coding protein_coding MGP_CASTEiJ_T0098296.1 MGP_CASTEiJ_G0035234.1 mouse_genomes_project X 146572277 146579431 - MGP_CASTEiJ_P0098296 Amelx protein_coding protein_coding MGP_CASTEiJ_T0098297.1 MGP_CASTEiJ_G0035234.1 mouse_genomes_project X 146572277 146579431 - MGP_CASTEiJ_P0098297 Amelx protein_coding protein_coding MGP_CASTEiJ_T0095758.1 MGP_CASTEiJ_G0034522.1 mouse_genomes_project X 2664667 2673611 - MGP_CASTEiJ_P0095758 Was protein_coding protein_coding MGP_CASTEiJ_T0097651.1 MGP_CASTEiJ_G0035073.1 mouse_genomes_project X 115105485 115116017 - MGP_CASTEiJ_P0097651 Rab9b protein_coding protein_coding MGP_CASTEiJ_T0095929.1 MGP_CASTEiJ_G0034570.1 mouse_genomes_project X 14957950 14970291 + MGP_CASTEiJ_P0095929 Rgn protein_coding protein_coding MGP_CASTEiJ_T0097305.1 MGP_CASTEiJ_G0034961.1 mouse_genomes_project X 87104350 87116596 + MGP_CASTEiJ_P0097305 Fgf16 protein_coding protein_coding MGP_CASTEiJ_T0097306.1 MGP_CASTEiJ_G0034961.1 mouse_genomes_project X 87104546 87161444 + MGP_CASTEiJ_P0097306 Fgf16 protein_coding unknown_likely_coding MGP_CASTEiJ_T0102655.1 MGP_CASTEiJ_G0039379.1 mouse_genomes_project X 131685983 131689616 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0009189.1 MGP_CASTEiJ_G0007386.1 mouse_genomes_project X 111792436 111813231 + Gm26851 lincRNA lincRNA MGP_CASTEiJ_T0097475.1 MGP_CASTEiJ_G0035013.1 mouse_genomes_project X 105024202 105027599 - MGP_CASTEiJ_P0097475 4932411N23Rik protein_coding protein_coding MGP_CASTEiJ_T0015881.1 MGP_CASTEiJ_G0014044.1 mouse_genomes_project X 76055934 76056260 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100214.1 MGP_CASTEiJ_G0037127.1 mouse_genomes_project X 90353213 90353380 - Gm23322 snRNA snRNA MGP_CASTEiJ_T0016235.1 MGP_CASTEiJ_G0014398.1 mouse_genomes_project X 145460155 145460624 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096930.1 MGP_CASTEiJ_G0034853.1 mouse_genomes_project X 66914132 66975347 + MGP_CASTEiJ_P0096930 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096931.1 MGP_CASTEiJ_G0034853.1 mouse_genomes_project X 66914252 66955061 + MGP_CASTEiJ_P0096931 protein_coding protein_coding MGP_CASTEiJ_T0096932.1 MGP_CASTEiJ_G0034853.1 mouse_genomes_project X 66914257 66915844 + protein_coding processed_transcript MGP_CASTEiJ_T0096933.1 MGP_CASTEiJ_G0034853.1 mouse_genomes_project X 66914368 66954851 + MGP_CASTEiJ_P0096933 protein_coding protein_coding MGP_CASTEiJ_T0097166.1 MGP_CASTEiJ_G0034919.1 mouse_genomes_project X 82471502 82480088 - MGP_CASTEiJ_P0097166 Gm20489 protein_coding protein_coding MGP_CASTEiJ_T0010871.1 MGP_CASTEiJ_G0009059.1 mouse_genomes_project X 79895760 79895858 - Gm27554 miRNA miRNA MGP_CASTEiJ_T0102634.1 MGP_CASTEiJ_G0039358.1 mouse_genomes_project X 59315948 59320692 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015682.1 MGP_CASTEiJ_G0013845.1 mouse_genomes_project X 32179848 32180197 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096427.1 MGP_CASTEiJ_G0034743.1 mouse_genomes_project X 52018642 52037405 - MGP_CASTEiJ_P0096427 Tmem185a protein_coding protein_coding MGP_CASTEiJ_T0096428.1 MGP_CASTEiJ_G0034743.1 mouse_genomes_project X 52019848 52037405 - MGP_CASTEiJ_P0096428 Tmem185a protein_coding protein_coding MGP_CASTEiJ_T0096429.1 MGP_CASTEiJ_G0034743.1 mouse_genomes_project X 52019943 52030429 - Tmem185a protein_coding processed_transcript MGP_CASTEiJ_T0096430.1 MGP_CASTEiJ_G0034743.1 mouse_genomes_project X 52021812 52037367 - Tmem185a protein_coding processed_transcript MGP_CASTEiJ_T0015851.1 MGP_CASTEiJ_G0014014.1 mouse_genomes_project X 71256413 71256663 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015768.1 MGP_CASTEiJ_G0013931.1 mouse_genomes_project X 51983876 51984800 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015706.1 MGP_CASTEiJ_G0013869.1 mouse_genomes_project X 39367754 39368000 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097992.1 MGP_CASTEiJ_G0035155.1 mouse_genomes_project X 130173451 130189444 + Gpr143 protein_coding processed_transcript MGP_CASTEiJ_T0097993.1 MGP_CASTEiJ_G0035155.1 mouse_genomes_project X 130173516 130202477 + MGP_CASTEiJ_P0097993 Gpr143 protein_coding protein_coding MGP_CASTEiJ_T0097994.1 MGP_CASTEiJ_G0035155.1 mouse_genomes_project X 130173548 130182225 + Gpr143 protein_coding retained_intron MGP_CASTEiJ_T0017914.1 MGP_CASTEiJ_G0015105.1 mouse_genomes_project X 113171717 113185117 - processed_transcript processed_transcript MGP_CASTEiJ_T0017915.1 MGP_CASTEiJ_G0015105.1 mouse_genomes_project X 113172515 113193464 - processed_transcript processed_transcript MGP_CASTEiJ_T0017916.1 MGP_CASTEiJ_G0015105.1 mouse_genomes_project X 113176895 113185569 - processed_transcript processed_transcript MGP_CASTEiJ_T0096038.1 MGP_CASTEiJ_G0034604.1 mouse_genomes_project X 20278372 20278946 + Ube2a protein_coding processed_transcript MGP_CASTEiJ_T0096039.1 MGP_CASTEiJ_G0034604.1 mouse_genomes_project X 20278805 20279842 + Ube2a protein_coding retained_intron MGP_CASTEiJ_T0096040.1 MGP_CASTEiJ_G0034604.1 mouse_genomes_project X 20278960 20288547 + MGP_CASTEiJ_P0096040 Ube2a protein_coding protein_coding MGP_CASTEiJ_T0016013.1 MGP_CASTEiJ_G0014176.1 mouse_genomes_project X 98790109 98792107 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015686.1 MGP_CASTEiJ_G0013849.1 mouse_genomes_project X 33258752 33259632 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097382.1 MGP_CASTEiJ_G0034977.1 mouse_genomes_project X 88789375 88797685 - MGP_CASTEiJ_P0097382 Itm2a protein_coding protein_coding MGP_CASTEiJ_T0096162.1 MGP_CASTEiJ_G0034647.1 mouse_genomes_project X 29384490 29385829 + MGP_CASTEiJ_P0096162 Actrt1 protein_coding protein_coding MGP_CASTEiJ_T0016104.1 MGP_CASTEiJ_G0014267.1 mouse_genomes_project X 119610071 119610426 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009138.1 MGP_CASTEiJ_G0007353.1 mouse_genomes_project X 15739604 15762689 - Gm6938 lincRNA lincRNA MGP_CASTEiJ_T0010835.1 MGP_CASTEiJ_G0009023.1 mouse_genomes_project X 42074323 42074413 - Mir505 miRNA miRNA MGP_CASTEiJ_T0016080.1 MGP_CASTEiJ_G0014243.1 mouse_genomes_project X 115135984 115136442 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100184.1 MGP_CASTEiJ_G0037097.1 mouse_genomes_project X 22609635 22609740 - Gm26437 snRNA snRNA MGP_CASTEiJ_T0015815.1 MGP_CASTEiJ_G0013978.1 mouse_genomes_project X 63145684 63149192 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100186.1 MGP_CASTEiJ_G0037099.1 mouse_genomes_project X 28862541 28862648 - Gm25078 snRNA snRNA MGP_CASTEiJ_T0097904.1 MGP_CASTEiJ_G0035141.1 mouse_genomes_project X 128467688 128478243 - MGP_CASTEiJ_P0097904 Tsr2 protein_coding protein_coding MGP_CASTEiJ_T0097905.1 MGP_CASTEiJ_G0035141.1 mouse_genomes_project X 128467689 128478243 - MGP_CASTEiJ_P0097905 Tsr2 protein_coding protein_coding MGP_CASTEiJ_T0097906.1 MGP_CASTEiJ_G0035141.1 mouse_genomes_project X 128470077 128478243 - MGP_CASTEiJ_P0097906 Tsr2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097907.1 MGP_CASTEiJ_G0035141.1 mouse_genomes_project X 128470291 128478223 - Tsr2 protein_coding processed_transcript MGP_CASTEiJ_T0100191.1 MGP_CASTEiJ_G0037104.1 mouse_genomes_project X 38476669 38476775 + Gm23258 snRNA snRNA MGP_CASTEiJ_T0010881.1 MGP_CASTEiJ_G0009069.1 mouse_genomes_project X 86770736 86770834 - Mir325 miRNA miRNA MGP_CASTEiJ_T0096011.1 MGP_CASTEiJ_G0034594.1 mouse_genomes_project X 19259124 19449248 + MGP_CASTEiJ_P0096011 Dock11 protein_coding protein_coding MGP_CASTEiJ_T0096012.1 MGP_CASTEiJ_G0034594.1 mouse_genomes_project X 19317369 19449242 + MGP_CASTEiJ_P0096012 Dock11 protein_coding protein_coding MGP_CASTEiJ_T0096013.1 MGP_CASTEiJ_G0034594.1 mouse_genomes_project X 19346290 19355238 + Dock11 protein_coding retained_intron MGP_CASTEiJ_T0096014.1 MGP_CASTEiJ_G0034594.1 mouse_genomes_project X 19382510 19389397 + Dock11 protein_coding retained_intron MGP_CASTEiJ_T0096015.1 MGP_CASTEiJ_G0034594.1 mouse_genomes_project X 19413539 19448913 + MGP_CASTEiJ_P0096015 Dock11 protein_coding protein_coding MGP_CASTEiJ_T0002402.1 MGP_CASTEiJ_G0002319.1 mouse_genomes_project X 25367332 25369529 - TEC TEC MGP_CASTEiJ_T0016132.1 MGP_CASTEiJ_G0014295.1 mouse_genomes_project X 122619977 122620307 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016015.1 MGP_CASTEiJ_G0014178.1 mouse_genomes_project X 98802162 98802366 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097997.1 MGP_CASTEiJ_G0035158.1 mouse_genomes_project X 130491748 130505813 + MGP_CASTEiJ_P0097997 Foxr2 protein_coding protein_coding MGP_CASTEiJ_T0097998.1 MGP_CASTEiJ_G0035158.1 mouse_genomes_project X 130499838 130505813 + MGP_CASTEiJ_P0097998 Foxr2 protein_coding protein_coding MGP_CASTEiJ_T0015794.1 MGP_CASTEiJ_G0013957.1 mouse_genomes_project X 58317999 58318714 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016110.1 MGP_CASTEiJ_G0014273.1 mouse_genomes_project X 120197644 120197917 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011450.1 MGP_CASTEiJ_G0009638.1 mouse_genomes_project X 123104994 123105316 + Gm26024 misc_RNA misc_RNA MGP_CASTEiJ_T0011445.1 MGP_CASTEiJ_G0009633.1 mouse_genomes_project X 114941051 114941344 + Gm23068 misc_RNA misc_RNA MGP_CASTEiJ_T0095810.1 MGP_CASTEiJ_G0034534.1 mouse_genomes_project X 3877707 3923857 + MGP_CASTEiJ_P0095810 protein_coding protein_coding MGP_CASTEiJ_T0101469.1 MGP_CASTEiJ_G0038382.1 mouse_genomes_project X 128915707 128915813 - Gm24460 snoRNA snoRNA MGP_CASTEiJ_T0010815.1 MGP_CASTEiJ_G0009003.1 mouse_genomes_project X 24887912 24887997 + Gm22413 miRNA miRNA MGP_CASTEiJ_T0015606.1 MGP_CASTEiJ_G0013769.1 mouse_genomes_project X 13416777 13417183 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015906.1 MGP_CASTEiJ_G0014069.1 mouse_genomes_project X 81352425 81352746 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015765.1 MGP_CASTEiJ_G0013928.1 mouse_genomes_project X 50351640 50351868 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095896.1 MGP_CASTEiJ_G0034558.1 mouse_genomes_project X 11166132 11233674 + MGP_CASTEiJ_P0095896 Maoa protein_coding protein_coding MGP_CASTEiJ_T0009214.1 MGP_CASTEiJ_G0007402.1 mouse_genomes_project X 146824900 146852039 + Gm15245 lincRNA lincRNA MGP_CASTEiJ_T0015791.1 MGP_CASTEiJ_G0013954.1 mouse_genomes_project X 57570761 57572066 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097463.1 MGP_CASTEiJ_G0035010.1 mouse_genomes_project X 100814065 100817036 + MGP_CASTEiJ_P0097463 Pabpc5 protein_coding protein_coding MGP_CASTEiJ_T0097464.1 MGP_CASTEiJ_G0035010.1 mouse_genomes_project X 100814094 100816880 + MGP_CASTEiJ_P0097464 Pabpc5 protein_coding protein_coding MGP_CASTEiJ_T0015977.1 MGP_CASTEiJ_G0014140.1 mouse_genomes_project X 92924614 92925259 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015968.1 MGP_CASTEiJ_G0014131.1 mouse_genomes_project X 90239651 90239807 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095753.1 MGP_CASTEiJ_G0034521.1 mouse_genomes_project X 2644336 2657947 - MGP_CASTEiJ_P0095753 Suv39h1 protein_coding protein_coding MGP_CASTEiJ_T0095754.1 MGP_CASTEiJ_G0034521.1 mouse_genomes_project X 2644591 2657808 - Suv39h1 protein_coding retained_intron MGP_CASTEiJ_T0095755.1 MGP_CASTEiJ_G0034521.1 mouse_genomes_project X 2644600 2657445 - MGP_CASTEiJ_P0095755 Suv39h1 protein_coding protein_coding MGP_CASTEiJ_T0095756.1 MGP_CASTEiJ_G0034521.1 mouse_genomes_project X 2650579 2657916 - MGP_CASTEiJ_P0095756 Suv39h1 protein_coding protein_coding MGP_CASTEiJ_T0095757.1 MGP_CASTEiJ_G0034521.1 mouse_genomes_project X 2653609 2657500 - Suv39h1 protein_coding retained_intron MGP_CASTEiJ_T0016143.1 MGP_CASTEiJ_G0014306.1 mouse_genomes_project X 124247581 124248416 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010812.1 MGP_CASTEiJ_G0009000.1 mouse_genomes_project X 19768427 19768564 - Gm44485 miRNA miRNA MGP_CASTEiJ_T0097307.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87139288 87289257 - MGP_CASTEiJ_P0097307 Atrx protein_coding unknown_likely_coding MGP_CASTEiJ_T0097308.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87139292 87289293 - MGP_CASTEiJ_P0097308 Atrx protein_coding protein_coding MGP_CASTEiJ_T0097309.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87142093 87143727 - Atrx protein_coding retained_intron MGP_CASTEiJ_T0097310.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87143426 87145462 - Atrx protein_coding retained_intron MGP_CASTEiJ_T0097311.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87160299 87169391 - MGP_CASTEiJ_P0097311 Atrx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097312.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87160325 87172886 - Atrx protein_coding processed_transcript MGP_CASTEiJ_T0097313.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87169409 87181501 - MGP_CASTEiJ_P0097313 Atrx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097314.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87181253 87192481 - Atrx protein_coding retained_intron MGP_CASTEiJ_T0097315.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87181608 87192665 - Atrx protein_coding retained_intron MGP_CASTEiJ_T0097316.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87192091 87197522 - Atrx protein_coding retained_intron MGP_CASTEiJ_T0097317.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87192444 87197236 - Atrx protein_coding retained_intron MGP_CASTEiJ_T0097318.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87197146 87226231 - Atrx protein_coding retained_intron MGP_CASTEiJ_T0097319.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87198670 87226562 - MGP_CASTEiJ_P0097319 Atrx protein_coding protein_coding MGP_CASTEiJ_T0097320.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87203086 87243234 - MGP_CASTEiJ_P0097320 Atrx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097321.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87213614 87226272 - MGP_CASTEiJ_P0097321 Atrx protein_coding protein_coding MGP_CASTEiJ_T0097322.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87226096 87289256 - MGP_CASTEiJ_P0097322 Atrx protein_coding protein_coding MGP_CASTEiJ_T0097323.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87227474 87289232 - MGP_CASTEiJ_P0097323 Atrx protein_coding protein_coding MGP_CASTEiJ_T0097324.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87227926 87289240 - MGP_CASTEiJ_P0097324 Atrx protein_coding protein_coding MGP_CASTEiJ_T0097325.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87227926 87289260 - MGP_CASTEiJ_P0097325 Atrx protein_coding protein_coding MGP_CASTEiJ_T0097326.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87228206 87289257 - MGP_CASTEiJ_P0097326 Atrx protein_coding protein_coding MGP_CASTEiJ_T0097327.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87228407 87289249 - MGP_CASTEiJ_P0097327 Atrx protein_coding protein_coding MGP_CASTEiJ_T0097328.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87228446 87289237 - MGP_CASTEiJ_P0097328 Atrx protein_coding protein_coding MGP_CASTEiJ_T0097329.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87231171 87233191 - Atrx protein_coding retained_intron MGP_CASTEiJ_T0097330.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87231191 87289125 - MGP_CASTEiJ_P0097330 Atrx protein_coding protein_coding MGP_CASTEiJ_T0097331.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87234759 87288603 - MGP_CASTEiJ_P0097331 Atrx protein_coding protein_coding MGP_CASTEiJ_T0097332.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87239766 87289193 - MGP_CASTEiJ_P0097332 Atrx protein_coding protein_coding MGP_CASTEiJ_T0097333.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87243191 87289287 - MGP_CASTEiJ_P0097333 Atrx protein_coding protein_coding MGP_CASTEiJ_T0097334.1 MGP_CASTEiJ_G0034962.1 mouse_genomes_project X 87256252 87289236 - Atrx protein_coding processed_transcript MGP_CASTEiJ_T0097586.1 MGP_CASTEiJ_G0035045.1 mouse_genomes_project X 113383117 113387952 - MGP_CASTEiJ_P0097586 Tceal3 protein_coding protein_coding MGP_CASTEiJ_T0009169.1 MGP_CASTEiJ_G0007377.1 mouse_genomes_project X 84879195 84892693 + Jpx lincRNA lincRNA MGP_CASTEiJ_T0009170.1 MGP_CASTEiJ_G0007377.1 mouse_genomes_project X 84879214 84880258 + Jpx lincRNA lincRNA MGP_CASTEiJ_T0009171.1 MGP_CASTEiJ_G0007377.1 mouse_genomes_project X 84879407 84888741 + Jpx lincRNA lincRNA MGP_CASTEiJ_T0009172.1 MGP_CASTEiJ_G0007377.1 mouse_genomes_project X 84879432 84888462 + Jpx lincRNA lincRNA MGP_CASTEiJ_T0015660.1 MGP_CASTEiJ_G0013823.1 mouse_genomes_project X 25570139 25570307 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095967.1 MGP_CASTEiJ_G0034577.1 mouse_genomes_project X 15272022 15338477 - MGP_CASTEiJ_P0095967 Syn1 protein_coding protein_coding MGP_CASTEiJ_T0095968.1 MGP_CASTEiJ_G0034577.1 mouse_genomes_project X 15272026 15338391 - MGP_CASTEiJ_P0095968 Syn1 protein_coding protein_coding MGP_CASTEiJ_T0096250.1 MGP_CASTEiJ_G0034671.1 mouse_genomes_project X 33287565 33288564 - MGP_CASTEiJ_P0096250 Olfr1324 protein_coding protein_coding MGP_CASTEiJ_T0097406.1 MGP_CASTEiJ_G0034986.1 mouse_genomes_project X 90541124 90542950 + MGP_CASTEiJ_P0097406 Gm6377 protein_coding protein_coding MGP_CASTEiJ_T0097407.1 MGP_CASTEiJ_G0034986.1 mouse_genomes_project X 90541126 90544811 + MGP_CASTEiJ_P0097407 Gm6377 protein_coding protein_coding MGP_CASTEiJ_T0101445.1 MGP_CASTEiJ_G0038358.1 mouse_genomes_project X 74639758 74639891 + Gm23454 snoRNA snoRNA MGP_CASTEiJ_T0096388.1 MGP_CASTEiJ_G0034726.1 mouse_genomes_project X 43958754 43967368 + MGP_CASTEiJ_P0096388 4933402E13Rik protein_coding protein_coding MGP_CASTEiJ_T0096389.1 MGP_CASTEiJ_G0034726.1 mouse_genomes_project X 43962397 43967368 + MGP_CASTEiJ_P0096389 4933402E13Rik protein_coding protein_coding MGP_CASTEiJ_T0010814.1 MGP_CASTEiJ_G0009002.1 mouse_genomes_project X 23263503 23263574 - Gm26194 miRNA miRNA MGP_CASTEiJ_T0000303.1 MGP_CASTEiJ_G0000252.1 mouse_genomes_project X 117183004 117183438 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0011425.1 MGP_CASTEiJ_G0009613.1 mouse_genomes_project X 36250387 36250694 + Gm23718 misc_RNA misc_RNA MGP_CASTEiJ_T0100181.1 MGP_CASTEiJ_G0037094.1 mouse_genomes_project X 19748236 19748340 + Gm25047 snRNA snRNA MGP_CASTEiJ_T0016169.1 MGP_CASTEiJ_G0014332.1 mouse_genomes_project X 131776602 131777249 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015776.1 MGP_CASTEiJ_G0013939.1 mouse_genomes_project X 53292997 53293212 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095806.1 MGP_CASTEiJ_G0034530.1 mouse_genomes_project X 3419759 3422706 + MGP_CASTEiJ_P0095806 B630019K06Rik protein_coding protein_coding MGP_CASTEiJ_T0016123.1 MGP_CASTEiJ_G0014286.1 mouse_genomes_project X 120956741 120956910 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097114.1 MGP_CASTEiJ_G0034906.1 mouse_genomes_project X 81717397 81738408 + Dgat2l6 protein_coding retained_intron MGP_CASTEiJ_T0097115.1 MGP_CASTEiJ_G0034906.1 mouse_genomes_project X 81717400 81738661 + MGP_CASTEiJ_P0097115 Dgat2l6 protein_coding protein_coding MGP_CASTEiJ_T0010876.1 MGP_CASTEiJ_G0009064.1 mouse_genomes_project X 84963775 84963870 - Mir374b miRNA miRNA MGP_CASTEiJ_T0015924.1 MGP_CASTEiJ_G0014087.1 mouse_genomes_project X 84370269 84370474 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097537.1 MGP_CASTEiJ_G0035032.1 mouse_genomes_project X 112590669 112607017 - MGP_CASTEiJ_P0097537 Taf7l protein_coding protein_coding MGP_CASTEiJ_T0097538.1 MGP_CASTEiJ_G0035032.1 mouse_genomes_project X 112591113 112605522 - MGP_CASTEiJ_P0097538 Taf7l protein_coding protein_coding MGP_CASTEiJ_T0097539.1 MGP_CASTEiJ_G0035032.1 mouse_genomes_project X 112600405 112605517 - Taf7l protein_coding processed_transcript MGP_CASTEiJ_T0097478.1 MGP_CASTEiJ_G0035016.1 mouse_genomes_project X 105911446 105917785 - MGP_CASTEiJ_P0097478 Cldn34c4 protein_coding protein_coding MGP_CASTEiJ_T0096205.1 MGP_CASTEiJ_G0034658.1 mouse_genomes_project X 31549912 31562143 + MGP_CASTEiJ_P0096205 Rab33a protein_coding protein_coding MGP_CASTEiJ_T0096809.1 MGP_CASTEiJ_G0034813.1 mouse_genomes_project X 56393347 56395216 + MGP_CASTEiJ_P0096809 protein_coding protein_coding MGP_CASTEiJ_T0015796.1 MGP_CASTEiJ_G0013959.1 mouse_genomes_project X 58547865 58548125 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096942.1 MGP_CASTEiJ_G0034855.1 mouse_genomes_project X 67217823 67238516 + MGP_CASTEiJ_P0096942 5430427O19Rik protein_coding protein_coding MGP_CASTEiJ_T0016058.1 MGP_CASTEiJ_G0014221.1 mouse_genomes_project X 111248149 111249772 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009191.1 MGP_CASTEiJ_G0007388.1 mouse_genomes_project X 119167555 119186304 + Eif2c5 lincRNA lincRNA MGP_CASTEiJ_T0096586.1 MGP_CASTEiJ_G0034787.1 mouse_genomes_project X 55499613 55501940 + MGP_CASTEiJ_P0096586 Avpr2 protein_coding protein_coding MGP_CASTEiJ_T0096587.1 MGP_CASTEiJ_G0034787.1 mouse_genomes_project X 55499614 55500933 + Avpr2 protein_coding processed_transcript MGP_CASTEiJ_T0096588.1 MGP_CASTEiJ_G0034787.1 mouse_genomes_project X 55499621 55503014 + MGP_CASTEiJ_P0096588 Avpr2 protein_coding protein_coding MGP_CASTEiJ_T0096589.1 MGP_CASTEiJ_G0034787.1 mouse_genomes_project X 55499625 55501709 + MGP_CASTEiJ_P0096589 Avpr2 protein_coding protein_coding MGP_CASTEiJ_T0097054.1 MGP_CASTEiJ_G0034890.1 mouse_genomes_project X 77783124 77891780 + MGP_CASTEiJ_P0097054 Heph protein_coding protein_coding MGP_CASTEiJ_T0097055.1 MGP_CASTEiJ_G0034890.1 mouse_genomes_project X 77784137 77861602 + MGP_CASTEiJ_P0097055 Heph protein_coding protein_coding MGP_CASTEiJ_T0097056.1 MGP_CASTEiJ_G0034890.1 mouse_genomes_project X 77784154 77891777 + MGP_CASTEiJ_P0097056 Heph protein_coding protein_coding MGP_CASTEiJ_T0097057.1 MGP_CASTEiJ_G0034890.1 mouse_genomes_project X 77784192 77809696 + Heph protein_coding retained_intron MGP_CASTEiJ_T0097058.1 MGP_CASTEiJ_G0034890.1 mouse_genomes_project X 77784192 77821377 + Heph protein_coding retained_intron MGP_CASTEiJ_T0015560.1 MGP_CASTEiJ_G0013723.1 mouse_genomes_project X 2235775 2236189 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009147.1 MGP_CASTEiJ_G0007360.1 mouse_genomes_project X 38007028 38011252 + 1600025M17Rik lincRNA lincRNA MGP_CASTEiJ_T0009148.1 MGP_CASTEiJ_G0007360.1 mouse_genomes_project X 38007086 38010111 + 1600025M17Rik lincRNA lincRNA MGP_CASTEiJ_T0096178.1 MGP_CASTEiJ_G0034651.1 mouse_genomes_project X 31124669 31154801 + MGP_CASTEiJ_P0096178 Xpnpep2 protein_coding protein_coding MGP_CASTEiJ_T0096179.1 MGP_CASTEiJ_G0034651.1 mouse_genomes_project X 31124863 31151836 + MGP_CASTEiJ_P0096179 Xpnpep2 protein_coding protein_coding MGP_CASTEiJ_T0096180.1 MGP_CASTEiJ_G0034651.1 mouse_genomes_project X 31124865 31128097 + Xpnpep2 protein_coding processed_transcript MGP_CASTEiJ_T0096181.1 MGP_CASTEiJ_G0034651.1 mouse_genomes_project X 31124873 31154490 + MGP_CASTEiJ_P0096181 Xpnpep2 protein_coding protein_coding MGP_CASTEiJ_T0096182.1 MGP_CASTEiJ_G0034651.1 mouse_genomes_project X 31145540 31148972 + Xpnpep2 protein_coding processed_transcript MGP_CASTEiJ_T0016024.1 MGP_CASTEiJ_G0014187.1 mouse_genomes_project X 101256746 101257202 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016106.1 MGP_CASTEiJ_G0014269.1 mouse_genomes_project X 119748194 119748380 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010801.1 MGP_CASTEiJ_G0008989.1 mouse_genomes_project X 1765534 1765599 - Mir362 miRNA miRNA MGP_CASTEiJ_T0097364.1 MGP_CASTEiJ_G0034972.1 mouse_genomes_project X 88249182 88252745 - MGP_CASTEiJ_P0097364 Zcchc5 protein_coding protein_coding MGP_CASTEiJ_T0097277.1 MGP_CASTEiJ_G0034943.1 mouse_genomes_project X 84254627 84255374 + MGP_CASTEiJ_P0097277 1700011M02Rik protein_coding protein_coding MGP_CASTEiJ_T0097266.1 MGP_CASTEiJ_G0034939.1 mouse_genomes_project X 83996585 84001781 + MGP_CASTEiJ_P0097266 protein_coding protein_coding MGP_CASTEiJ_T0097267.1 MGP_CASTEiJ_G0034939.1 mouse_genomes_project X 83996585 84001781 + MGP_CASTEiJ_P0097267 protein_coding protein_coding MGP_CASTEiJ_T0097268.1 MGP_CASTEiJ_G0034939.1 mouse_genomes_project X 83996768 84001781 + MGP_CASTEiJ_P0097268 protein_coding protein_coding MGP_CASTEiJ_T0101459.1 MGP_CASTEiJ_G0038372.1 mouse_genomes_project X 113483137 113483251 - snoRNA snoRNA MGP_CASTEiJ_T0011447.1 MGP_CASTEiJ_G0009635.1 mouse_genomes_project X 116410546 116410808 - Gm24675 misc_RNA misc_RNA MGP_CASTEiJ_T0096105.1 MGP_CASTEiJ_G0034635.1 mouse_genomes_project X 22648665 22650982 + MGP_CASTEiJ_P0096105 Cypt14 protein_coding protein_coding MGP_CASTEiJ_T0016046.1 MGP_CASTEiJ_G0014209.1 mouse_genomes_project X 108536105 108537365 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015989.1 MGP_CASTEiJ_G0014152.1 mouse_genomes_project X 94037825 94038767 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096379.1 MGP_CASTEiJ_G0034721.1 mouse_genomes_project X 41898833 42276240 - MGP_CASTEiJ_P0096379 Atp11c protein_coding protein_coding MGP_CASTEiJ_T0096380.1 MGP_CASTEiJ_G0034721.1 mouse_genomes_project X 41898836 42083860 - MGP_CASTEiJ_P0096380 Atp11c protein_coding protein_coding MGP_CASTEiJ_T0096381.1 MGP_CASTEiJ_G0034721.1 mouse_genomes_project X 41898836 42083860 - MGP_CASTEiJ_P0096381 Atp11c protein_coding protein_coding MGP_CASTEiJ_T0096382.1 MGP_CASTEiJ_G0034721.1 mouse_genomes_project X 41901166 41949122 - Atp11c protein_coding processed_transcript MGP_CASTEiJ_T0096383.1 MGP_CASTEiJ_G0034721.1 mouse_genomes_project X 41916311 42276240 - Atp11c protein_coding processed_transcript MGP_CASTEiJ_T0098157.1 MGP_CASTEiJ_G0035199.1 mouse_genomes_project X 140148379 140182033 - Txlng protein_coding retained_intron MGP_CASTEiJ_T0098158.1 MGP_CASTEiJ_G0035199.1 mouse_genomes_project X 140148379 140200351 - MGP_CASTEiJ_P0098158 Txlng protein_coding protein_coding MGP_CASTEiJ_T0098159.1 MGP_CASTEiJ_G0035199.1 mouse_genomes_project X 140148379 140200351 - MGP_CASTEiJ_P0098159 Txlng protein_coding protein_coding MGP_CASTEiJ_T0098160.1 MGP_CASTEiJ_G0035199.1 mouse_genomes_project X 140158342 140182084 - MGP_CASTEiJ_P0098160 Txlng protein_coding protein_coding MGP_CASTEiJ_T0098161.1 MGP_CASTEiJ_G0035199.1 mouse_genomes_project X 140158343 140200351 - MGP_CASTEiJ_P0098161 Txlng protein_coding protein_coding MGP_CASTEiJ_T0098162.1 MGP_CASTEiJ_G0035199.1 mouse_genomes_project X 140198956 140200351 - Txlng protein_coding processed_transcript MGP_CASTEiJ_T0096998.1 MGP_CASTEiJ_G0034876.1 mouse_genomes_project X 75974425 75981357 - MGP_CASTEiJ_P0096998 Maged1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096999.1 MGP_CASTEiJ_G0034876.1 mouse_genomes_project X 75974427 75981105 - MGP_CASTEiJ_P0096999 Maged1 protein_coding protein_coding MGP_CASTEiJ_T0097000.1 MGP_CASTEiJ_G0034876.1 mouse_genomes_project X 75974429 75976800 - Maged1 protein_coding retained_intron MGP_CASTEiJ_T0097001.1 MGP_CASTEiJ_G0034876.1 mouse_genomes_project X 75974429 75976529 - Maged1 protein_coding retained_intron MGP_CASTEiJ_T0097002.1 MGP_CASTEiJ_G0034876.1 mouse_genomes_project X 75974429 75980952 - Maged1 protein_coding retained_intron MGP_CASTEiJ_T0097003.1 MGP_CASTEiJ_G0034876.1 mouse_genomes_project X 75975035 75976849 - Maged1 protein_coding retained_intron MGP_CASTEiJ_T0097004.1 MGP_CASTEiJ_G0034876.1 mouse_genomes_project X 75976639 75977791 - Maged1 protein_coding retained_intron MGP_CASTEiJ_T0097005.1 MGP_CASTEiJ_G0034876.1 mouse_genomes_project X 75979458 75980965 - Maged1 protein_coding retained_intron MGP_CASTEiJ_T0009160.1 MGP_CASTEiJ_G0007370.1 mouse_genomes_project X 76242816 76248490 + Gm26617 lincRNA lincRNA MGP_CASTEiJ_T0016109.1 MGP_CASTEiJ_G0014272.1 mouse_genomes_project X 120109745 120110222 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015959.1 MGP_CASTEiJ_G0014122.1 mouse_genomes_project X 88166465 88166686 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015578.1 MGP_CASTEiJ_G0013741.1 mouse_genomes_project X 7125956 7126304 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095930.1 MGP_CASTEiJ_G0034571.1 mouse_genomes_project X 15013871 15016169 - MGP_CASTEiJ_P0095930 Ndufb11 protein_coding protein_coding MGP_CASTEiJ_T0102612.1 MGP_CASTEiJ_G0039336.1 mouse_genomes_project X 3679854 3680367 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002407.1 MGP_CASTEiJ_G0002324.1 mouse_genomes_project X 106556231 106557296 + TEC TEC MGP_CASTEiJ_T0101703.1 MGP_CASTEiJ_G0038524.1 mouse_genomes_project X 146754948 146756667 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0005469.1 MGP_CASTEiJ_G0004616.1 mouse_genomes_project X 137845765 137857039 - Gm15241 antisense antisense MGP_CASTEiJ_T0010855.1 MGP_CASTEiJ_G0009043.1 mouse_genomes_project X 49613995 49614070 - Mir509 miRNA miRNA MGP_CASTEiJ_T0095986.1 MGP_CASTEiJ_G0034583.1 mouse_genomes_project X 15494059 15498365 + MGP_CASTEiJ_P0095986 Spaca5 protein_coding protein_coding MGP_CASTEiJ_T0017876.1 MGP_CASTEiJ_G0015094.1 mouse_genomes_project X 42838396 42857335 + C230004F18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017877.1 MGP_CASTEiJ_G0015094.1 mouse_genomes_project X 42838396 42862360 + C230004F18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017878.1 MGP_CASTEiJ_G0015094.1 mouse_genomes_project X 42838396 42900667 + C230004F18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017879.1 MGP_CASTEiJ_G0015094.1 mouse_genomes_project X 42838396 42843162 + C230004F18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017880.1 MGP_CASTEiJ_G0015094.1 mouse_genomes_project X 42838408 42900667 + C230004F18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017920.1 MGP_CASTEiJ_G0015109.1 mouse_genomes_project X 114381307 114392061 + 5730412P04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0015804.1 MGP_CASTEiJ_G0013967.1 mouse_genomes_project X 60182033 60182405 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016125.1 MGP_CASTEiJ_G0014288.1 mouse_genomes_project X 121507367 121508397 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015786.1 MGP_CASTEiJ_G0013949.1 mouse_genomes_project X 56429811 56430195 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011444.1 MGP_CASTEiJ_G0009632.1 mouse_genomes_project X 111495865 111496202 - Gm22552 misc_RNA misc_RNA MGP_CASTEiJ_T0096424.1 MGP_CASTEiJ_G0034741.1 mouse_genomes_project X 51867722 51892146 - MGP_CASTEiJ_P0096424 Ids protein_coding protein_coding MGP_CASTEiJ_T0096425.1 MGP_CASTEiJ_G0034741.1 mouse_genomes_project X 51877418 51888154 - MGP_CASTEiJ_P0096425 Ids protein_coding protein_coding MGP_CASTEiJ_T0016226.1 MGP_CASTEiJ_G0014389.1 mouse_genomes_project X 143811340 143812741 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096839.1 MGP_CASTEiJ_G0034820.1 mouse_genomes_project X 56818810 56836616 - MGP_CASTEiJ_P0096839 Smim9 protein_coding protein_coding MGP_CASTEiJ_T0096840.1 MGP_CASTEiJ_G0034820.1 mouse_genomes_project X 56818988 56834478 - MGP_CASTEiJ_P0096840 Smim9 protein_coding protein_coding MGP_CASTEiJ_T0096841.1 MGP_CASTEiJ_G0034820.1 mouse_genomes_project X 56821762 56836633 - Smim9 protein_coding processed_transcript MGP_CASTEiJ_T0097240.1 MGP_CASTEiJ_G0034932.1 mouse_genomes_project X 83321221 83325873 - MGP_CASTEiJ_P0097240 Rgag4 protein_coding protein_coding MGP_CASTEiJ_T0097241.1 MGP_CASTEiJ_G0034932.1 mouse_genomes_project X 83321221 83325981 - MGP_CASTEiJ_P0097241 Rgag4 protein_coding protein_coding MGP_CASTEiJ_T0097242.1 MGP_CASTEiJ_G0034932.1 mouse_genomes_project X 83321411 83322278 - Rgag4 protein_coding processed_transcript MGP_CASTEiJ_T0016121.1 MGP_CASTEiJ_G0014284.1 mouse_genomes_project X 120866281 120866712 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016047.1 MGP_CASTEiJ_G0014210.1 mouse_genomes_project X 108654359 108655035 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015611.1 MGP_CASTEiJ_G0013774.1 mouse_genomes_project X 14305156 14305593 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101443.1 MGP_CASTEiJ_G0038356.1 mouse_genomes_project X 63932841 63932973 - Gm24470 snoRNA snoRNA MGP_CASTEiJ_T0010854.1 MGP_CASTEiJ_G0009042.1 mouse_genomes_project X 49589224 49589302 - Mir547 miRNA miRNA MGP_CASTEiJ_T0097112.1 MGP_CASTEiJ_G0034905.1 mouse_genomes_project X 81686757 81708628 + MGP_CASTEiJ_P0097112 Igbp1 protein_coding protein_coding MGP_CASTEiJ_T0097113.1 MGP_CASTEiJ_G0034905.1 mouse_genomes_project X 81686821 81691869 + Igbp1 protein_coding retained_intron MGP_CASTEiJ_T0016195.1 MGP_CASTEiJ_G0014358.1 mouse_genomes_project X 135862768 135863346 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097995.1 MGP_CASTEiJ_G0035156.1 mouse_genomes_project X 130398303 130401251 - MGP_CASTEiJ_P0097995 Usp51 protein_coding protein_coding MGP_CASTEiJ_T0097809.1 MGP_CASTEiJ_G0035125.1 mouse_genomes_project X 122617110 122683615 + MGP_CASTEiJ_P0097809 Alg13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097810.1 MGP_CASTEiJ_G0035125.1 mouse_genomes_project X 122617113 122624302 + MGP_CASTEiJ_P0097810 Alg13 protein_coding protein_coding MGP_CASTEiJ_T0097811.1 MGP_CASTEiJ_G0035125.1 mouse_genomes_project X 122617113 122639735 + MGP_CASTEiJ_P0097811 Alg13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097812.1 MGP_CASTEiJ_G0035125.1 mouse_genomes_project X 122617121 122624282 + MGP_CASTEiJ_P0097812 Alg13 protein_coding protein_coding MGP_CASTEiJ_T0097813.1 MGP_CASTEiJ_G0035125.1 mouse_genomes_project X 122617128 122683615 + MGP_CASTEiJ_P0097813 Alg13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097814.1 MGP_CASTEiJ_G0035125.1 mouse_genomes_project X 122617133 122624173 + Alg13 protein_coding processed_transcript MGP_CASTEiJ_T0097815.1 MGP_CASTEiJ_G0035125.1 mouse_genomes_project X 122617133 122683620 + MGP_CASTEiJ_P0097815 Alg13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097816.1 MGP_CASTEiJ_G0035125.1 mouse_genomes_project X 122635830 122638980 + Alg13 protein_coding processed_transcript MGP_CASTEiJ_T0097817.1 MGP_CASTEiJ_G0035125.1 mouse_genomes_project X 122636455 122643436 + Alg13 protein_coding retained_intron MGP_CASTEiJ_T0097818.1 MGP_CASTEiJ_G0035125.1 mouse_genomes_project X 122637122 122668200 + MGP_CASTEiJ_P0097818 Alg13 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097819.1 MGP_CASTEiJ_G0035125.1 mouse_genomes_project X 122638983 122683620 + Alg13 protein_coding processed_transcript MGP_CASTEiJ_T0097820.1 MGP_CASTEiJ_G0035125.1 mouse_genomes_project X 122640446 122646653 + Alg13 protein_coding retained_intron MGP_CASTEiJ_T0097821.1 MGP_CASTEiJ_G0035125.1 mouse_genomes_project X 122647739 122683620 + Alg13 protein_coding processed_transcript MGP_CASTEiJ_T0097822.1 MGP_CASTEiJ_G0035125.1 mouse_genomes_project X 122657671 122678938 + Alg13 protein_coding processed_transcript MGP_CASTEiJ_T0015730.1 MGP_CASTEiJ_G0013893.1 mouse_genomes_project X 43304826 43305261 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097111.1 MGP_CASTEiJ_G0034904.1 mouse_genomes_project X 81622087 81622960 + MGP_CASTEiJ_P0097111 Otud6a protein_coding protein_coding MGP_CASTEiJ_T0097633.1 MGP_CASTEiJ_G0035066.1 mouse_genomes_project X 114536823 114538696 + MGP_CASTEiJ_P0097633 Wbp5 protein_coding protein_coding MGP_CASTEiJ_T0097634.1 MGP_CASTEiJ_G0035066.1 mouse_genomes_project X 114537428 114538696 + MGP_CASTEiJ_P0097634 Wbp5 protein_coding protein_coding MGP_CASTEiJ_T0016179.1 MGP_CASTEiJ_G0014342.1 mouse_genomes_project X 133292694 133293601 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015795.1 MGP_CASTEiJ_G0013958.1 mouse_genomes_project X 58425151 58427485 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097583.1 MGP_CASTEiJ_G0035044.1 mouse_genomes_project X 113118767 113158228 - MGP_CASTEiJ_P0097583 Zmat1 protein_coding protein_coding MGP_CASTEiJ_T0097584.1 MGP_CASTEiJ_G0035044.1 mouse_genomes_project X 113118770 113158252 - MGP_CASTEiJ_P0097584 Zmat1 protein_coding protein_coding MGP_CASTEiJ_T0097585.1 MGP_CASTEiJ_G0035044.1 mouse_genomes_project X 113120176 113125974 - Zmat1 protein_coding retained_intron MGP_CASTEiJ_T0009196.1 MGP_CASTEiJ_G0007392.1 mouse_genomes_project X 128558289 128561222 + Gm15138 lincRNA lincRNA MGP_CASTEiJ_T0010852.1 MGP_CASTEiJ_G0009040.1 mouse_genomes_project X 48471289 48471363 - Mir465 miRNA miRNA MGP_CASTEiJ_T0009208.1 MGP_CASTEiJ_G0007398.1 mouse_genomes_project X 144201827 144209361 - Gm15230 lincRNA lincRNA MGP_CASTEiJ_T0100193.1 MGP_CASTEiJ_G0037106.1 mouse_genomes_project X 40095753 40095860 - Gm25851 snRNA snRNA MGP_CASTEiJ_T0098062.1 MGP_CASTEiJ_G0035180.1 mouse_genomes_project X 135532945 135534967 + MGP_CASTEiJ_P0098062 protein_coding protein_coding MGP_CASTEiJ_T0098063.1 MGP_CASTEiJ_G0035180.1 mouse_genomes_project X 135532947 135534967 + MGP_CASTEiJ_P0098063 protein_coding protein_coding MGP_CASTEiJ_T0016227.1 MGP_CASTEiJ_G0014390.1 mouse_genomes_project X 143814723 143815549 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016111.1 MGP_CASTEiJ_G0014274.1 mouse_genomes_project X 120197646 120197917 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016131.1 MGP_CASTEiJ_G0014294.1 mouse_genomes_project X 122619974 122620307 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098014.1 MGP_CASTEiJ_G0035165.1 mouse_genomes_project X 131685989 131690157 - MGP_CASTEiJ_P0098014 4930524N10Rik protein_coding protein_coding MGP_CASTEiJ_T0015936.1 MGP_CASTEiJ_G0014099.1 mouse_genomes_project X 84893077 84893859 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015581.1 MGP_CASTEiJ_G0013744.1 mouse_genomes_project X 7345037 7345145 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016027.1 MGP_CASTEiJ_G0014190.1 mouse_genomes_project X 101857396 101858566 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015986.1 MGP_CASTEiJ_G0014149.1 mouse_genomes_project X 93873570 93874549 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096403.1 MGP_CASTEiJ_G0034736.1 mouse_genomes_project X 50246667 50288983 + MGP_CASTEiJ_P0096403 Fmr1 protein_coding protein_coding MGP_CASTEiJ_T0096404.1 MGP_CASTEiJ_G0034736.1 mouse_genomes_project X 50246708 50279476 + Fmr1 protein_coding retained_intron MGP_CASTEiJ_T0096405.1 MGP_CASTEiJ_G0034736.1 mouse_genomes_project X 50246708 50277377 + Fmr1 protein_coding retained_intron MGP_CASTEiJ_T0096406.1 MGP_CASTEiJ_G0034736.1 mouse_genomes_project X 50246708 50248231 + Fmr1 protein_coding processed_transcript MGP_CASTEiJ_T0096407.1 MGP_CASTEiJ_G0034736.1 mouse_genomes_project X 50246750 50288983 + MGP_CASTEiJ_P0096407 Fmr1 protein_coding protein_coding MGP_CASTEiJ_T0096408.1 MGP_CASTEiJ_G0034736.1 mouse_genomes_project X 50246928 50288983 + MGP_CASTEiJ_P0096408 Fmr1 protein_coding protein_coding MGP_CASTEiJ_T0096409.1 MGP_CASTEiJ_G0034736.1 mouse_genomes_project X 50246928 50288983 + MGP_CASTEiJ_P0096409 Fmr1 protein_coding protein_coding MGP_CASTEiJ_T0096410.1 MGP_CASTEiJ_G0034736.1 mouse_genomes_project X 50246937 50288983 + MGP_CASTEiJ_P0096410 Fmr1 protein_coding protein_coding MGP_CASTEiJ_T0096411.1 MGP_CASTEiJ_G0034736.1 mouse_genomes_project X 50246943 50288983 + MGP_CASTEiJ_P0096411 Fmr1 protein_coding protein_coding MGP_CASTEiJ_T0096412.1 MGP_CASTEiJ_G0034736.1 mouse_genomes_project X 50265228 50276655 + Fmr1 protein_coding retained_intron MGP_CASTEiJ_T0096413.1 MGP_CASTEiJ_G0034736.1 mouse_genomes_project X 50268109 50268783 + Fmr1 protein_coding retained_intron MGP_CASTEiJ_T0096414.1 MGP_CASTEiJ_G0034736.1 mouse_genomes_project X 50282844 50284314 + Fmr1 protein_coding retained_intron MGP_CASTEiJ_T0097494.1 MGP_CASTEiJ_G0035021.1 mouse_genomes_project X 111997654 112005005 - MGP_CASTEiJ_P0097494 Tspan6 protein_coding protein_coding MGP_CASTEiJ_T0097495.1 MGP_CASTEiJ_G0035021.1 mouse_genomes_project X 111999286 112004870 - MGP_CASTEiJ_P0097495 Tspan6 protein_coding protein_coding MGP_CASTEiJ_T0097496.1 MGP_CASTEiJ_G0035021.1 mouse_genomes_project X 112001108 112004870 - MGP_CASTEiJ_P0097496 Tspan6 protein_coding protein_coding MGP_CASTEiJ_T0097497.1 MGP_CASTEiJ_G0035021.1 mouse_genomes_project X 112003306 112004689 - Tspan6 protein_coding processed_transcript MGP_CASTEiJ_T0016237.1 MGP_CASTEiJ_G0014400.1 mouse_genomes_project X 145916048 145916381 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016152.1 MGP_CASTEiJ_G0014315.1 mouse_genomes_project X 127765204 127765408 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096993.1 MGP_CASTEiJ_G0034874.1 mouse_genomes_project X 75800040 75811828 - MGP_CASTEiJ_P0096993 Fam90a1b protein_coding protein_coding MGP_CASTEiJ_T0096994.1 MGP_CASTEiJ_G0034874.1 mouse_genomes_project X 75800857 75810702 - MGP_CASTEiJ_P0096994 Fam90a1b protein_coding protein_coding MGP_CASTEiJ_T0096995.1 MGP_CASTEiJ_G0034874.1 mouse_genomes_project X 75802141 75811101 - MGP_CASTEiJ_P0096995 Fam90a1b protein_coding protein_coding MGP_CASTEiJ_T0002408.1 MGP_CASTEiJ_G0002325.1 mouse_genomes_project X 112892762 112894187 - TEC TEC MGP_CASTEiJ_T0102640.1 MGP_CASTEiJ_G0039364.1 mouse_genomes_project X 73027102 73028021 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0098421.1 MGP_CASTEiJ_G0035352.1 mouse_genomes_project X 34114881 34115988 - pseudogene pseudogene MGP_CASTEiJ_T0101465.1 MGP_CASTEiJ_G0038378.1 mouse_genomes_project X 121740276 121740405 + Gm23325 snoRNA snoRNA MGP_CASTEiJ_T0016221.1 MGP_CASTEiJ_G0014384.1 mouse_genomes_project X 142250104 142250381 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098057.1 MGP_CASTEiJ_G0035178.1 mouse_genomes_project X 135169239 135171174 + MGP_CASTEiJ_P0098057 Klhl34 protein_coding protein_coding MGP_CASTEiJ_T0097957.1 MGP_CASTEiJ_G0035148.1 mouse_genomes_project X 129394024 129417862 + MGP_CASTEiJ_P0097957 Smc1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097958.1 MGP_CASTEiJ_G0035148.1 mouse_genomes_project X 129394024 129446542 + MGP_CASTEiJ_P0097958 Smc1a protein_coding protein_coding MGP_CASTEiJ_T0097959.1 MGP_CASTEiJ_G0035148.1 mouse_genomes_project X 129418096 129419710 + Smc1a protein_coding retained_intron MGP_CASTEiJ_T0097960.1 MGP_CASTEiJ_G0035148.1 mouse_genomes_project X 129428067 129429372 + Smc1a protein_coding retained_intron MGP_CASTEiJ_T0097961.1 MGP_CASTEiJ_G0035148.1 mouse_genomes_project X 129442312 129443354 + Smc1a protein_coding retained_intron MGP_CASTEiJ_T0097962.1 MGP_CASTEiJ_G0035148.1 mouse_genomes_project X 129442920 129443622 + Smc1a protein_coding retained_intron MGP_CASTEiJ_T0100218.1 MGP_CASTEiJ_G0037131.1 mouse_genomes_project X 96340519 96340643 - Gm25366 snRNA snRNA MGP_CASTEiJ_T0016072.1 MGP_CASTEiJ_G0014235.1 mouse_genomes_project X 113992079 113993900 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015879.1 MGP_CASTEiJ_G0014042.1 mouse_genomes_project X 76000591 76001000 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015693.1 MGP_CASTEiJ_G0013856.1 mouse_genomes_project X 34134820 34135509 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096996.1 MGP_CASTEiJ_G0034875.1 mouse_genomes_project X 75812204 75866540 + MGP_CASTEiJ_P0096996 Apoo protein_coding protein_coding MGP_CASTEiJ_T0096997.1 MGP_CASTEiJ_G0034875.1 mouse_genomes_project X 75812204 75863628 + MGP_CASTEiJ_P0096997 Apoo protein_coding protein_coding MGP_CASTEiJ_T0098774.1 MGP_CASTEiJ_G0035705.1 mouse_genomes_project X 19199280 19199555 + Gm25624 scaRNA scaRNA MGP_CASTEiJ_T0009186.1 MGP_CASTEiJ_G0007383.1 mouse_genomes_project X 98463034 98463403 + Gm28579 lincRNA lincRNA MGP_CASTEiJ_T0015666.1 MGP_CASTEiJ_G0013829.1 mouse_genomes_project X 27017019 27017654 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096842.1 MGP_CASTEiJ_G0034821.1 mouse_genomes_project X 56845690 57052241 - MGP_CASTEiJ_P0096842 F8 protein_coding protein_coding MGP_CASTEiJ_T0096843.1 MGP_CASTEiJ_G0034821.1 mouse_genomes_project X 56996532 57055222 - MGP_CASTEiJ_P0096843 F8 protein_coding protein_coding MGP_CASTEiJ_T0096844.1 MGP_CASTEiJ_G0034821.1 mouse_genomes_project X 57030071 57054900 - MGP_CASTEiJ_P0096844 F8 protein_coding protein_coding MGP_CASTEiJ_T0098143.1 MGP_CASTEiJ_G0035196.1 mouse_genomes_project X 139191648 139270908 - MGP_CASTEiJ_P0098143 Nhs protein_coding unknown_likely_coding MGP_CASTEiJ_T0098144.1 MGP_CASTEiJ_G0035196.1 mouse_genomes_project X 139191654 139527376 - MGP_CASTEiJ_P0098144 Nhs protein_coding protein_coding MGP_CASTEiJ_T0098145.1 MGP_CASTEiJ_G0035196.1 mouse_genomes_project X 139194881 139527126 - MGP_CASTEiJ_P0098145 Nhs protein_coding unknown_likely_coding MGP_CASTEiJ_T0098146.1 MGP_CASTEiJ_G0035196.1 mouse_genomes_project X 139195175 139527034 - MGP_CASTEiJ_P0098146 Nhs protein_coding protein_coding MGP_CASTEiJ_T0015918.1 MGP_CASTEiJ_G0014081.1 mouse_genomes_project X 83455104 83455570 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015830.1 MGP_CASTEiJ_G0013993.1 mouse_genomes_project X 67169661 67169922 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015991.1 MGP_CASTEiJ_G0014154.1 mouse_genomes_project X 95056406 95057975 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009185.1 MGP_CASTEiJ_G0007382.1 mouse_genomes_project X 95916319 95917930 + 4930555B12Rik lincRNA lincRNA MGP_CASTEiJ_T0096221.1 MGP_CASTEiJ_G0034661.1 mouse_genomes_project X 31707333 31714188 - MGP_CASTEiJ_P0096221 Gpr119 protein_coding protein_coding MGP_CASTEiJ_T0096541.1 MGP_CASTEiJ_G0034778.1 mouse_genomes_project X 55276366 55308230 - MGP_CASTEiJ_P0096541 Bcap31 protein_coding protein_coding MGP_CASTEiJ_T0095824.1 MGP_CASTEiJ_G0034540.1 mouse_genomes_project X 4595897 4677582 - MGP_CASTEiJ_P0095824 Srpx protein_coding protein_coding MGP_CASTEiJ_T0095825.1 MGP_CASTEiJ_G0034540.1 mouse_genomes_project X 4596475 4677609 - MGP_CASTEiJ_P0095825 Srpx protein_coding protein_coding MGP_CASTEiJ_T0095826.1 MGP_CASTEiJ_G0034540.1 mouse_genomes_project X 4596827 4677505 - MGP_CASTEiJ_P0095826 Srpx protein_coding protein_coding MGP_CASTEiJ_T0095827.1 MGP_CASTEiJ_G0034540.1 mouse_genomes_project X 4633200 4677576 - Srpx protein_coding processed_transcript MGP_CASTEiJ_T0015816.1 MGP_CASTEiJ_G0013979.1 mouse_genomes_project X 63678361 63678647 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009157.1 MGP_CASTEiJ_G0007368.1 mouse_genomes_project X 67176187 67177958 + Gm14762 lincRNA lincRNA MGP_CASTEiJ_T0009158.1 MGP_CASTEiJ_G0007368.1 mouse_genomes_project X 67176956 67185075 + Gm14762 lincRNA lincRNA MGP_CASTEiJ_T0015788.1 MGP_CASTEiJ_G0013951.1 mouse_genomes_project X 56931023 56932950 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016016.1 MGP_CASTEiJ_G0014179.1 mouse_genomes_project X 98803256 98805017 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016074.1 MGP_CASTEiJ_G0014237.1 mouse_genomes_project X 114705638 114706083 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100176.1 MGP_CASTEiJ_G0037089.1 mouse_genomes_project X 14221029 14221136 - Gm23678 snRNA snRNA MGP_CASTEiJ_T0015980.1 MGP_CASTEiJ_G0014143.1 mouse_genomes_project X 93402633 93402905 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011440.1 MGP_CASTEiJ_G0009628.1 mouse_genomes_project X 90456165 90456458 - Gm26415 misc_RNA misc_RNA MGP_CASTEiJ_T0016208.1 MGP_CASTEiJ_G0014371.1 mouse_genomes_project X 138648594 138649198 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015558.1 MGP_CASTEiJ_G0013721.1 mouse_genomes_project X 2079559 2080122 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011448.1 MGP_CASTEiJ_G0009636.1 mouse_genomes_project X 118000822 118001146 - Gm24380 misc_RNA misc_RNA MGP_CASTEiJ_T0096030.1 MGP_CASTEiJ_G0034601.1 mouse_genomes_project X 20000372 20040211 - MGP_CASTEiJ_P0096030 Akap17b protein_coding protein_coding MGP_CASTEiJ_T0096031.1 MGP_CASTEiJ_G0034601.1 mouse_genomes_project X 20003926 20039912 - MGP_CASTEiJ_P0096031 Akap17b protein_coding protein_coding MGP_CASTEiJ_T0098701.1 MGP_CASTEiJ_G0035632.1 mouse_genomes_project X 129703386 129703497 + n-R5s15 rRNA rRNA MGP_CASTEiJ_T0015577.1 MGP_CASTEiJ_G0013740.1 mouse_genomes_project X 6841795 6842145 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097645.1 MGP_CASTEiJ_G0035071.1 mouse_genomes_project X 115003772 115024366 - MGP_CASTEiJ_P0097645 Glra4 protein_coding protein_coding MGP_CASTEiJ_T0097646.1 MGP_CASTEiJ_G0035071.1 mouse_genomes_project X 115013177 115024366 - Glra4 protein_coding retained_intron MGP_CASTEiJ_T0101452.1 MGP_CASTEiJ_G0038365.1 mouse_genomes_project X 100411078 100411194 - Gm26182 snoRNA snoRNA MGP_CASTEiJ_T0098686.1 MGP_CASTEiJ_G0035617.1 mouse_genomes_project X 5086113 5086222 + Gm25885 rRNA rRNA MGP_CASTEiJ_T0095925.1 MGP_CASTEiJ_G0034569.1 mouse_genomes_project X 14833027 14922227 + MGP_CASTEiJ_P0095925 Jade3 protein_coding protein_coding MGP_CASTEiJ_T0095926.1 MGP_CASTEiJ_G0034569.1 mouse_genomes_project X 14833117 14922233 + MGP_CASTEiJ_P0095926 Jade3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095927.1 MGP_CASTEiJ_G0034569.1 mouse_genomes_project X 14833127 14897688 + Jade3 protein_coding retained_intron MGP_CASTEiJ_T0095928.1 MGP_CASTEiJ_G0034569.1 mouse_genomes_project X 14861532 14920184 + MGP_CASTEiJ_P0095928 Jade3 protein_coding protein_coding MGP_CASTEiJ_T0096159.1 MGP_CASTEiJ_G0034645.1 mouse_genomes_project X 27917534 27921164 - MGP_CASTEiJ_P0096159 Dcaf12l1 protein_coding protein_coding MGP_CASTEiJ_T0096160.1 MGP_CASTEiJ_G0034645.1 mouse_genomes_project X 27917534 27921128 - MGP_CASTEiJ_P0096160 Dcaf12l1 protein_coding protein_coding MGP_CASTEiJ_T0097773.1 MGP_CASTEiJ_G0035114.1 mouse_genomes_project X 120409040 120510105 - MGP_CASTEiJ_P0097773 Gucy2f protein_coding protein_coding MGP_CASTEiJ_T0097774.1 MGP_CASTEiJ_G0035114.1 mouse_genomes_project X 120413039 120503060 - MGP_CASTEiJ_P0097774 Gucy2f protein_coding unknown_likely_coding MGP_CASTEiJ_T0015773.1 MGP_CASTEiJ_G0013936.1 mouse_genomes_project X 52317684 52318292 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096507.1 MGP_CASTEiJ_G0034770.1 mouse_genomes_project X 54989323 55005131 + MGP_CASTEiJ_P0096507 Zfp92 protein_coding protein_coding MGP_CASTEiJ_T0096508.1 MGP_CASTEiJ_G0034770.1 mouse_genomes_project X 54989796 55006531 + MGP_CASTEiJ_P0096508 Zfp92 protein_coding protein_coding MGP_CASTEiJ_T0010874.1 MGP_CASTEiJ_G0009062.1 mouse_genomes_project X 83538046 83538142 - Gm26318 miRNA miRNA MGP_CASTEiJ_T0005450.1 MGP_CASTEiJ_G0004603.1 mouse_genomes_project X 67086978 67091700 + Gm14764 antisense antisense MGP_CASTEiJ_T0016082.1 MGP_CASTEiJ_G0014245.1 mouse_genomes_project X 115162147 115163270 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097432.1 MGP_CASTEiJ_G0034996.1 mouse_genomes_project X 93486075 93509282 - MGP_CASTEiJ_P0097432 Satl1 protein_coding protein_coding MGP_CASTEiJ_T0097433.1 MGP_CASTEiJ_G0034996.1 mouse_genomes_project X 93486077 93510239 - MGP_CASTEiJ_P0097433 Satl1 protein_coding protein_coding MGP_CASTEiJ_T0101451.1 MGP_CASTEiJ_G0038364.1 mouse_genomes_project X 97702108 97702223 + Gm24438 snoRNA snoRNA MGP_CASTEiJ_T0097273.1 MGP_CASTEiJ_G0034942.1 mouse_genomes_project X 84234547 84239684 - MGP_CASTEiJ_P0097273 Dmrtc1a protein_coding protein_coding MGP_CASTEiJ_T0097274.1 MGP_CASTEiJ_G0034942.1 mouse_genomes_project X 84234547 84238188 - MGP_CASTEiJ_P0097274 Dmrtc1a protein_coding protein_coding MGP_CASTEiJ_T0097275.1 MGP_CASTEiJ_G0034942.1 mouse_genomes_project X 84234553 84237877 - MGP_CASTEiJ_P0097275 Dmrtc1a protein_coding protein_coding MGP_CASTEiJ_T0097276.1 MGP_CASTEiJ_G0034942.1 mouse_genomes_project X 84234553 84237788 - MGP_CASTEiJ_P0097276 Dmrtc1a protein_coding protein_coding MGP_CASTEiJ_T0098702.1 MGP_CASTEiJ_G0035633.1 mouse_genomes_project X 132931117 132931236 + n-R5s16 rRNA rRNA MGP_CASTEiJ_T0096951.1 MGP_CASTEiJ_G0034861.1 mouse_genomes_project X 71293941 71296702 - MGP_CASTEiJ_P0096951 4930415L06Rik protein_coding protein_coding MGP_CASTEiJ_T0016039.1 MGP_CASTEiJ_G0014202.1 mouse_genomes_project X 105157941 105158196 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015620.1 MGP_CASTEiJ_G0013783.1 mouse_genomes_project X 15923785 15925971 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100231.1 MGP_CASTEiJ_G0037144.1 mouse_genomes_project X 128776604 128776754 + Gm22248 snRNA snRNA MGP_CASTEiJ_T0096248.1 MGP_CASTEiJ_G0034669.1 mouse_genomes_project X 32834783 32835716 - MGP_CASTEiJ_P0096248 Olfr1322 protein_coding protein_coding MGP_CASTEiJ_T0097440.1 MGP_CASTEiJ_G0035000.1 mouse_genomes_project X 94116520 94255024 - MGP_CASTEiJ_P0097440 Chm protein_coding protein_coding MGP_CASTEiJ_T0097441.1 MGP_CASTEiJ_G0035000.1 mouse_genomes_project X 94116522 94255024 - MGP_CASTEiJ_P0097441 Chm protein_coding protein_coding MGP_CASTEiJ_T0097442.1 MGP_CASTEiJ_G0035000.1 mouse_genomes_project X 94119099 94123486 - Chm protein_coding processed_transcript MGP_CASTEiJ_T0097443.1 MGP_CASTEiJ_G0035000.1 mouse_genomes_project X 94139956 94255016 - Chm protein_coding processed_transcript MGP_CASTEiJ_T0097444.1 MGP_CASTEiJ_G0035000.1 mouse_genomes_project X 94200030 94255016 - Chm protein_coding processed_transcript MGP_CASTEiJ_T0097692.1 MGP_CASTEiJ_G0035088.1 mouse_genomes_project X 117490056 117491838 + MGP_CASTEiJ_P0097692 4933428M09Rik protein_coding protein_coding MGP_CASTEiJ_T0015961.1 MGP_CASTEiJ_G0014124.1 mouse_genomes_project X 88233097 88233389 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102643.1 MGP_CASTEiJ_G0039367.1 mouse_genomes_project X 77006393 77006928 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015849.1 MGP_CASTEiJ_G0014012.1 mouse_genomes_project X 70813347 70814068 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009173.1 MGP_CASTEiJ_G0007378.1 mouse_genomes_project X 84950980 85016804 - Ftx lincRNA lincRNA MGP_CASTEiJ_T0009174.1 MGP_CASTEiJ_G0007378.1 mouse_genomes_project X 84952978 85009881 - Ftx lincRNA lincRNA MGP_CASTEiJ_T0009175.1 MGP_CASTEiJ_G0007378.1 mouse_genomes_project X 84959658 85016713 - Ftx lincRNA lincRNA MGP_CASTEiJ_T0009176.1 MGP_CASTEiJ_G0007378.1 mouse_genomes_project X 84959658 85009788 - Ftx lincRNA lincRNA MGP_CASTEiJ_T0009177.1 MGP_CASTEiJ_G0007378.1 mouse_genomes_project X 85000021 85016804 - Ftx lincRNA lincRNA MGP_CASTEiJ_T0009178.1 MGP_CASTEiJ_G0007378.1 mouse_genomes_project X 85000074 85015543 - Ftx lincRNA lincRNA MGP_CASTEiJ_T0015941.1 MGP_CASTEiJ_G0014104.1 mouse_genomes_project X 85078136 85078453 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097434.1 MGP_CASTEiJ_G0034997.1 mouse_genomes_project X 93595212 93660089 + MGP_CASTEiJ_P0097434 2010106E10Rik protein_coding protein_coding MGP_CASTEiJ_T0097435.1 MGP_CASTEiJ_G0034997.1 mouse_genomes_project X 93595213 93660079 + MGP_CASTEiJ_P0097435 2010106E10Rik protein_coding protein_coding MGP_CASTEiJ_T0098689.1 MGP_CASTEiJ_G0035620.1 mouse_genomes_project X 16151980 16152059 + Gm25553 rRNA rRNA MGP_CASTEiJ_T0015871.1 MGP_CASTEiJ_G0014034.1 mouse_genomes_project X 75388506 75389907 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015935.1 MGP_CASTEiJ_G0014098.1 mouse_genomes_project X 84873875 84874736 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015576.1 MGP_CASTEiJ_G0013739.1 mouse_genomes_project X 6634624 6634854 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000208.1 MGP_CASTEiJ_G0000157.1 mouse_genomes_project X 117183004 117183298 - MGP_CASTEiJ_P0000208 Ighv1-16 IG_V_gene IG_V_gene MGP_CASTEiJ_T0097133.1 MGP_CASTEiJ_G0034912.1 mouse_genomes_project X 81928686 81931238 + Gdpd2 protein_coding processed_transcript MGP_CASTEiJ_T0097134.1 MGP_CASTEiJ_G0034912.1 mouse_genomes_project X 81928751 81934003 + Gdpd2 protein_coding retained_intron MGP_CASTEiJ_T0097135.1 MGP_CASTEiJ_G0034912.1 mouse_genomes_project X 81928755 81937695 + MGP_CASTEiJ_P0097135 Gdpd2 protein_coding protein_coding MGP_CASTEiJ_T0097136.1 MGP_CASTEiJ_G0034912.1 mouse_genomes_project X 81928999 81937695 + MGP_CASTEiJ_P0097136 Gdpd2 protein_coding protein_coding MGP_CASTEiJ_T0097137.1 MGP_CASTEiJ_G0034912.1 mouse_genomes_project X 81935129 81937696 + Gdpd2 protein_coding retained_intron MGP_CASTEiJ_T0097279.1 MGP_CASTEiJ_G0034945.1 mouse_genomes_project X 84689492 84701160 + MGP_CASTEiJ_P0097279 Cdx4 protein_coding protein_coding MGP_CASTEiJ_T0097635.1 MGP_CASTEiJ_G0035067.1 mouse_genomes_project X 114557641 114558311 + MGP_CASTEiJ_P0097635 Ngfrap1 protein_coding protein_coding MGP_CASTEiJ_T0096399.1 MGP_CASTEiJ_G0034733.1 mouse_genomes_project X 48278372 48290491 + MGP_CASTEiJ_P0096399 Slitrk2 protein_coding protein_coding MGP_CASTEiJ_T0096400.1 MGP_CASTEiJ_G0034733.1 mouse_genomes_project X 48282083 48285567 + MGP_CASTEiJ_P0096400 Slitrk2 protein_coding protein_coding MGP_CASTEiJ_T0015806.1 MGP_CASTEiJ_G0013969.1 mouse_genomes_project X 60398664 60401520 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095957.1 MGP_CASTEiJ_G0034576.1 mouse_genomes_project X 15200430 15272009 + MGP_CASTEiJ_P0095957 Araf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095958.1 MGP_CASTEiJ_G0034576.1 mouse_genomes_project X 15260070 15272031 + MGP_CASTEiJ_P0095958 Araf protein_coding protein_coding MGP_CASTEiJ_T0095959.1 MGP_CASTEiJ_G0034576.1 mouse_genomes_project X 15260091 15267039 + Araf protein_coding retained_intron MGP_CASTEiJ_T0095960.1 MGP_CASTEiJ_G0034576.1 mouse_genomes_project X 15260093 15264426 + MGP_CASTEiJ_P0095960 Araf protein_coding protein_coding MGP_CASTEiJ_T0095961.1 MGP_CASTEiJ_G0034576.1 mouse_genomes_project X 15260102 15266082 + Araf protein_coding processed_transcript MGP_CASTEiJ_T0095962.1 MGP_CASTEiJ_G0034576.1 mouse_genomes_project X 15260105 15264411 + MGP_CASTEiJ_P0095962 Araf protein_coding protein_coding MGP_CASTEiJ_T0095963.1 MGP_CASTEiJ_G0034576.1 mouse_genomes_project X 15260109 15263236 + Araf protein_coding retained_intron MGP_CASTEiJ_T0095964.1 MGP_CASTEiJ_G0034576.1 mouse_genomes_project X 15260116 15264972 + MGP_CASTEiJ_P0095964 Araf protein_coding protein_coding MGP_CASTEiJ_T0095965.1 MGP_CASTEiJ_G0034576.1 mouse_genomes_project X 15262648 15263733 + Araf protein_coding retained_intron MGP_CASTEiJ_T0095966.1 MGP_CASTEiJ_G0034576.1 mouse_genomes_project X 15269224 15271720 + MGP_CASTEiJ_P0095966 Araf protein_coding protein_coding MGP_CASTEiJ_T0016050.1 MGP_CASTEiJ_G0014213.1 mouse_genomes_project X 109162590 109163984 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015650.1 MGP_CASTEiJ_G0013813.1 mouse_genomes_project X 23428456 23429005 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096387.1 MGP_CASTEiJ_G0034725.1 mouse_genomes_project X 43400013 43401473 + MGP_CASTEiJ_P0096387 Ldoc1 protein_coding protein_coding MGP_CASTEiJ_T0096418.1 MGP_CASTEiJ_G0034738.1 mouse_genomes_project X 50456078 50456786 - MGP_CASTEiJ_P0096418 protein_coding protein_coding MGP_CASTEiJ_T0016076.1 MGP_CASTEiJ_G0014239.1 mouse_genomes_project X 114714892 114716824 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009150.1 MGP_CASTEiJ_G0007362.1 mouse_genomes_project X 44192044 44198703 - lincRNA lincRNA MGP_CASTEiJ_T0009151.1 MGP_CASTEiJ_G0007362.1 mouse_genomes_project X 44192044 44241909 - lincRNA lincRNA MGP_CASTEiJ_T0017843.1 MGP_CASTEiJ_G0015081.1 mouse_genomes_project X 1953946 1963203 - 2010204K13Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017844.1 MGP_CASTEiJ_G0015081.1 mouse_genomes_project X 1954216 1954955 - 2010204K13Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017845.1 MGP_CASTEiJ_G0015081.1 mouse_genomes_project X 1954232 1964955 - 2010204K13Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017846.1 MGP_CASTEiJ_G0015081.1 mouse_genomes_project X 1954235 1987419 - 2010204K13Rik processed_transcript processed_transcript MGP_CASTEiJ_T0010898.1 MGP_CASTEiJ_G0009086.1 mouse_genomes_project X 125268112 125268198 + Mir1264 miRNA miRNA MGP_CASTEiJ_T0015676.1 MGP_CASTEiJ_G0013839.1 mouse_genomes_project X 30418209 30419179 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015949.1 MGP_CASTEiJ_G0014112.1 mouse_genomes_project X 86717340 86718076 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095598.1 MGP_CASTEiJ_G0034487.1 mouse_genomes_project X 953692 1197308 + MGP_CASTEiJ_P0095598 Shroom4 protein_coding protein_coding MGP_CASTEiJ_T0095599.1 MGP_CASTEiJ_G0034487.1 mouse_genomes_project X 971351 1149025 + MGP_CASTEiJ_P0095599 Shroom4 protein_coding protein_coding MGP_CASTEiJ_T0095600.1 MGP_CASTEiJ_G0034487.1 mouse_genomes_project X 1142771 1200933 + MGP_CASTEiJ_P0095600 Shroom4 protein_coding protein_coding MGP_CASTEiJ_T0015937.1 MGP_CASTEiJ_G0014100.1 mouse_genomes_project X 84903282 84903711 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096281.1 MGP_CASTEiJ_G0034684.1 mouse_genomes_project X 36008330 36184185 - MGP_CASTEiJ_P0096281 Plac1 protein_coding protein_coding MGP_CASTEiJ_T0096282.1 MGP_CASTEiJ_G0034684.1 mouse_genomes_project X 36008331 36054540 - MGP_CASTEiJ_P0096282 Plac1 protein_coding protein_coding MGP_CASTEiJ_T0096283.1 MGP_CASTEiJ_G0034684.1 mouse_genomes_project X 36008506 36153784 - MGP_CASTEiJ_P0096283 Plac1 protein_coding protein_coding MGP_CASTEiJ_T0017933.1 MGP_CASTEiJ_G0015114.1 mouse_genomes_project X 140101493 140103030 - Gm15201 processed_transcript processed_transcript MGP_CASTEiJ_T0097411.1 MGP_CASTEiJ_G0034990.1 mouse_genomes_project X 92485763 92568350 - MGP_CASTEiJ_P0097411 protein_coding protein_coding MGP_CASTEiJ_T0097412.1 MGP_CASTEiJ_G0034990.1 mouse_genomes_project X 92485763 92568491 - MGP_CASTEiJ_P0097412 protein_coding protein_coding MGP_CASTEiJ_T0097413.1 MGP_CASTEiJ_G0034990.1 mouse_genomes_project X 92485764 92588402 - MGP_CASTEiJ_P0097413 protein_coding protein_coding MGP_CASTEiJ_T0097414.1 MGP_CASTEiJ_G0034990.1 mouse_genomes_project X 92485764 92568491 - MGP_CASTEiJ_P0097414 protein_coding protein_coding MGP_CASTEiJ_T0097415.1 MGP_CASTEiJ_G0034990.1 mouse_genomes_project X 92487351 92568412 - MGP_CASTEiJ_P0097415 protein_coding protein_coding MGP_CASTEiJ_T0097416.1 MGP_CASTEiJ_G0034990.1 mouse_genomes_project X 92538073 92588381 - MGP_CASTEiJ_P0097416 protein_coding protein_coding MGP_CASTEiJ_T0097417.1 MGP_CASTEiJ_G0034990.1 mouse_genomes_project X 92539016 92637632 - MGP_CASTEiJ_P0097417 protein_coding protein_coding MGP_CASTEiJ_T0097418.1 MGP_CASTEiJ_G0034990.1 mouse_genomes_project X 92543437 92567946 - MGP_CASTEiJ_P0097418 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097419.1 MGP_CASTEiJ_G0034990.1 mouse_genomes_project X 92543514 92644963 - MGP_CASTEiJ_P0097419 protein_coding protein_coding MGP_CASTEiJ_T0097420.1 MGP_CASTEiJ_G0034990.1 mouse_genomes_project X 92550624 92644975 - MGP_CASTEiJ_P0097420 protein_coding protein_coding MGP_CASTEiJ_T0097421.1 MGP_CASTEiJ_G0034990.1 mouse_genomes_project X 92555621 92643358 - MGP_CASTEiJ_P0097421 protein_coding protein_coding MGP_CASTEiJ_T0015719.1 MGP_CASTEiJ_G0013882.1 mouse_genomes_project X 42235718 42236549 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096392.1 MGP_CASTEiJ_G0034729.1 mouse_genomes_project X 45849213 45854439 + MGP_CASTEiJ_P0096392 3830417A13Rik protein_coding protein_coding MGP_CASTEiJ_T0096393.1 MGP_CASTEiJ_G0034729.1 mouse_genomes_project X 45850013 45853168 + MGP_CASTEiJ_P0096393 3830417A13Rik protein_coding protein_coding MGP_CASTEiJ_T0010868.1 MGP_CASTEiJ_G0009056.1 mouse_genomes_project X 75716206 75716270 + Mir7673 miRNA miRNA MGP_CASTEiJ_T0015905.1 MGP_CASTEiJ_G0014068.1 mouse_genomes_project X 80999146 81000342 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102616.1 MGP_CASTEiJ_G0039340.1 mouse_genomes_project X 21215226 21216236 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0096673.1 MGP_CASTEiJ_G0034796.1 mouse_genomes_project X 55864910 55889281 - MGP_CASTEiJ_P0096673 Flna protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096674.1 MGP_CASTEiJ_G0034796.1 mouse_genomes_project X 55864910 55892805 - MGP_CASTEiJ_P0096674 Flna protein_coding protein_coding MGP_CASTEiJ_T0096675.1 MGP_CASTEiJ_G0034796.1 mouse_genomes_project X 55864912 55889417 - MGP_CASTEiJ_P0096675 Flna protein_coding protein_coding MGP_CASTEiJ_T0096676.1 MGP_CASTEiJ_G0034796.1 mouse_genomes_project X 55864990 55889438 - MGP_CASTEiJ_P0096676 Flna protein_coding protein_coding MGP_CASTEiJ_T0096677.1 MGP_CASTEiJ_G0034796.1 mouse_genomes_project X 55865238 55889247 - MGP_CASTEiJ_P0096677 Flna protein_coding protein_coding MGP_CASTEiJ_T0096678.1 MGP_CASTEiJ_G0034796.1 mouse_genomes_project X 55866259 55867929 - Flna protein_coding processed_transcript MGP_CASTEiJ_T0096679.1 MGP_CASTEiJ_G0034796.1 mouse_genomes_project X 55866283 55868239 - Flna protein_coding retained_intron MGP_CASTEiJ_T0096680.1 MGP_CASTEiJ_G0034796.1 mouse_genomes_project X 55867897 55869070 - Flna protein_coding retained_intron MGP_CASTEiJ_T0096681.1 MGP_CASTEiJ_G0034796.1 mouse_genomes_project X 55868321 55869939 - MGP_CASTEiJ_P0096681 Flna protein_coding protein_coding MGP_CASTEiJ_T0096682.1 MGP_CASTEiJ_G0034796.1 mouse_genomes_project X 55868686 55869418 - Flna protein_coding retained_intron MGP_CASTEiJ_T0096683.1 MGP_CASTEiJ_G0034796.1 mouse_genomes_project X 55869301 55870513 - MGP_CASTEiJ_P0096683 Flna protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096684.1 MGP_CASTEiJ_G0034796.1 mouse_genomes_project X 55869535 55870249 - Flna protein_coding retained_intron MGP_CASTEiJ_T0096685.1 MGP_CASTEiJ_G0034796.1 mouse_genomes_project X 55869829 55872020 - MGP_CASTEiJ_P0096685 Flna protein_coding protein_coding MGP_CASTEiJ_T0096686.1 MGP_CASTEiJ_G0034796.1 mouse_genomes_project X 55872145 55877422 - Flna protein_coding processed_transcript MGP_CASTEiJ_T0096687.1 MGP_CASTEiJ_G0034796.1 mouse_genomes_project X 55877540 55880819 - Flna protein_coding processed_transcript MGP_CASTEiJ_T0015789.1 MGP_CASTEiJ_G0013952.1 mouse_genomes_project X 57130152 57130800 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016198.1 MGP_CASTEiJ_G0014361.1 mouse_genomes_project X 136429714 136432313 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015817.1 MGP_CASTEiJ_G0013980.1 mouse_genomes_project X 63716442 63717591 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102641.1 MGP_CASTEiJ_G0039365.1 mouse_genomes_project X 73556712 73557756 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0016183.1 MGP_CASTEiJ_G0014346.1 mouse_genomes_project X 134711194 134712240 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009149.1 MGP_CASTEiJ_G0007361.1 mouse_genomes_project X 42736567 42771650 + Gm14664 lincRNA lincRNA MGP_CASTEiJ_T0101430.1 MGP_CASTEiJ_G0038343.1 mouse_genomes_project X 49175354 49175463 - Gm26276 snoRNA snoRNA MGP_CASTEiJ_T0017885.1 MGP_CASTEiJ_G0015099.1 mouse_genomes_project X 82506656 82532071 + Gm21986 processed_transcript processed_transcript MGP_CASTEiJ_T0096530.1 MGP_CASTEiJ_G0034777.1 mouse_genomes_project X 55262484 55272719 + MGP_CASTEiJ_P0096530 Slc6a8 protein_coding protein_coding MGP_CASTEiJ_T0096531.1 MGP_CASTEiJ_G0034777.1 mouse_genomes_project X 55263938 55271514 + MGP_CASTEiJ_P0096531 Slc6a8 protein_coding protein_coding MGP_CASTEiJ_T0096532.1 MGP_CASTEiJ_G0034777.1 mouse_genomes_project X 55264020 55272722 + MGP_CASTEiJ_P0096532 Slc6a8 protein_coding protein_coding MGP_CASTEiJ_T0096533.1 MGP_CASTEiJ_G0034777.1 mouse_genomes_project X 55264150 55267560 + Slc6a8 protein_coding retained_intron MGP_CASTEiJ_T0096534.1 MGP_CASTEiJ_G0034777.1 mouse_genomes_project X 55265738 55267579 + MGP_CASTEiJ_P0096534 Slc6a8 protein_coding protein_coding MGP_CASTEiJ_T0096535.1 MGP_CASTEiJ_G0034777.1 mouse_genomes_project X 55267076 55272719 + MGP_CASTEiJ_P0096535 Slc6a8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096536.1 MGP_CASTEiJ_G0034777.1 mouse_genomes_project X 55267288 55269991 + Slc6a8 protein_coding retained_intron MGP_CASTEiJ_T0096537.1 MGP_CASTEiJ_G0034777.1 mouse_genomes_project X 55268373 55271323 + Slc6a8 protein_coding retained_intron MGP_CASTEiJ_T0096538.1 MGP_CASTEiJ_G0034777.1 mouse_genomes_project X 55269100 55270222 + Slc6a8 protein_coding processed_transcript MGP_CASTEiJ_T0096539.1 MGP_CASTEiJ_G0034777.1 mouse_genomes_project X 55269115 55270138 + Slc6a8 protein_coding retained_intron MGP_CASTEiJ_T0096540.1 MGP_CASTEiJ_G0034777.1 mouse_genomes_project X 55269115 55270225 + Slc6a8 protein_coding retained_intron MGP_CASTEiJ_T0010831.1 MGP_CASTEiJ_G0009019.1 mouse_genomes_project X 35992669 35992764 - Mir322 miRNA miRNA MGP_CASTEiJ_T0100185.1 MGP_CASTEiJ_G0037098.1 mouse_genomes_project X 26458165 26458355 + Gm24763 snRNA snRNA MGP_CASTEiJ_T0101461.1 MGP_CASTEiJ_G0038374.1 mouse_genomes_project X 113653635 113653749 - snoRNA snoRNA MGP_CASTEiJ_T0016161.1 MGP_CASTEiJ_G0014324.1 mouse_genomes_project X 129145582 129145969 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097825.1 MGP_CASTEiJ_G0035127.1 mouse_genomes_project X 122991429 123392508 + MGP_CASTEiJ_P0097825 Zcchc16 protein_coding protein_coding MGP_CASTEiJ_T0097826.1 MGP_CASTEiJ_G0035127.1 mouse_genomes_project X 123389597 123391355 + MGP_CASTEiJ_P0097826 Zcchc16 protein_coding protein_coding MGP_CASTEiJ_T0095593.1 MGP_CASTEiJ_G0034483.1 mouse_genomes_project X 59523 61895 - MGP_CASTEiJ_P0095593 Mycs protein_coding protein_coding MGP_CASTEiJ_T0095911.1 MGP_CASTEiJ_G0034565.1 mouse_genomes_project X 12963138 13016988 - 4930578C19Rik protein_coding processed_transcript MGP_CASTEiJ_T0095912.1 MGP_CASTEiJ_G0034565.1 mouse_genomes_project X 12966686 13016962 - MGP_CASTEiJ_P0095912 4930578C19Rik protein_coding protein_coding MGP_CASTEiJ_T0097631.1 MGP_CASTEiJ_G0035065.1 mouse_genomes_project X 114507202 114517568 + MGP_CASTEiJ_P0097631 Tceal7 protein_coding protein_coding MGP_CASTEiJ_T0097632.1 MGP_CASTEiJ_G0035065.1 mouse_genomes_project X 114516353 114518281 + MGP_CASTEiJ_P0097632 Tceal7 protein_coding protein_coding MGP_CASTEiJ_T0100225.1 MGP_CASTEiJ_G0037138.1 mouse_genomes_project X 116677544 116677649 - Gm23958 snRNA snRNA MGP_CASTEiJ_T0096292.1 MGP_CASTEiJ_G0034688.1 mouse_genomes_project X 36381879 36391253 + MGP_CASTEiJ_P0096292 Etd protein_coding protein_coding MGP_CASTEiJ_T0097474.1 MGP_CASTEiJ_G0035012.1 mouse_genomes_project X 103220241 103223077 - MGP_CASTEiJ_P0097474 Nap1l3 protein_coding protein_coding MGP_CASTEiJ_T0015826.1 MGP_CASTEiJ_G0013989.1 mouse_genomes_project X 67137075 67137441 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096297.1 MGP_CASTEiJ_G0034693.1 mouse_genomes_project X 36514918 36515322 - MGP_CASTEiJ_P0096297 Cxx1c protein_coding protein_coding MGP_CASTEiJ_T0002411.1 MGP_CASTEiJ_G0002328.1 mouse_genomes_project X 143164114 143164452 - TEC TEC MGP_CASTEiJ_T0015885.1 MGP_CASTEiJ_G0014048.1 mouse_genomes_project X 76238133 76238766 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096888.1 MGP_CASTEiJ_G0034841.1 mouse_genomes_project X 59737156 59743425 + MGP_CASTEiJ_P0096888 protein_coding protein_coding MGP_CASTEiJ_T0096431.1 MGP_CASTEiJ_G0034744.1 mouse_genomes_project X 52051311 52052226 + 4930567H17Rik protein_coding lincRNA MGP_CASTEiJ_T0096432.1 MGP_CASTEiJ_G0034744.1 mouse_genomes_project X 52051311 52052226 + MGP_CASTEiJ_P0096432 4930567H17Rik protein_coding protein_coding MGP_CASTEiJ_T0096866.1 MGP_CASTEiJ_G0034828.1 mouse_genomes_project X 57438430 57535743 - MGP_CASTEiJ_P0096866 Pls3 protein_coding protein_coding MGP_CASTEiJ_T0096867.1 MGP_CASTEiJ_G0034828.1 mouse_genomes_project X 57438439 57484704 - MGP_CASTEiJ_P0096867 Pls3 protein_coding protein_coding MGP_CASTEiJ_T0096868.1 MGP_CASTEiJ_G0034828.1 mouse_genomes_project X 57438439 57533914 - MGP_CASTEiJ_P0096868 Pls3 protein_coding protein_coding MGP_CASTEiJ_T0096869.1 MGP_CASTEiJ_G0034828.1 mouse_genomes_project X 57438444 57499351 - MGP_CASTEiJ_P0096869 Pls3 protein_coding protein_coding MGP_CASTEiJ_T0096870.1 MGP_CASTEiJ_G0034828.1 mouse_genomes_project X 57439547 57499473 - MGP_CASTEiJ_P0096870 Pls3 protein_coding protein_coding MGP_CASTEiJ_T0096871.1 MGP_CASTEiJ_G0034828.1 mouse_genomes_project X 57532903 57535660 - Pls3 protein_coding processed_transcript MGP_CASTEiJ_T0015608.1 MGP_CASTEiJ_G0013771.1 mouse_genomes_project X 13876894 13877391 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010864.1 MGP_CASTEiJ_G0009052.1 mouse_genomes_project X 55923906 55923985 - Mir7091 miRNA miRNA MGP_CASTEiJ_T0016130.1 MGP_CASTEiJ_G0014293.1 mouse_genomes_project X 122583184 122585697 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015790.1 MGP_CASTEiJ_G0013953.1 mouse_genomes_project X 57144096 57144388 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016174.1 MGP_CASTEiJ_G0014337.1 mouse_genomes_project X 132530309 132530669 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016200.1 MGP_CASTEiJ_G0014363.1 mouse_genomes_project X 136932304 136932866 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010851.1 MGP_CASTEiJ_G0009039.1 mouse_genomes_project X 48462547 48462628 - Mir465b-2 miRNA miRNA MGP_CASTEiJ_T0015863.1 MGP_CASTEiJ_G0014026.1 mouse_genomes_project X 73449021 73449685 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010877.1 MGP_CASTEiJ_G0009065.1 mouse_genomes_project X 84963800 84963849 + Mir374c miRNA miRNA MGP_CASTEiJ_T0097999.1 MGP_CASTEiJ_G0035159.1 mouse_genomes_project X 130514569 130555876 + MGP_CASTEiJ_P0097999 Rragb protein_coding protein_coding MGP_CASTEiJ_T0098000.1 MGP_CASTEiJ_G0035159.1 mouse_genomes_project X 130514575 130532091 + MGP_CASTEiJ_P0098000 Rragb protein_coding protein_coding MGP_CASTEiJ_T0015732.1 MGP_CASTEiJ_G0013895.1 mouse_genomes_project X 43523863 43524955 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100211.1 MGP_CASTEiJ_G0037124.1 mouse_genomes_project X 87224794 87224904 + Gm23656 snRNA snRNA MGP_CASTEiJ_T0096391.1 MGP_CASTEiJ_G0034728.1 mouse_genomes_project X 45826177 45826958 - MGP_CASTEiJ_P0096391 Gm6760 protein_coding protein_coding MGP_CASTEiJ_T0015644.1 MGP_CASTEiJ_G0013807.1 mouse_genomes_project X 22803476 22803884 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102615.1 MGP_CASTEiJ_G0039339.1 mouse_genomes_project X 21044436 21044933 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0095654.1 MGP_CASTEiJ_G0034501.1 mouse_genomes_project X 2222048 2230133 - Magix protein_coding processed_transcript MGP_CASTEiJ_T0095655.1 MGP_CASTEiJ_G0034501.1 mouse_genomes_project X 2223513 2229971 - MGP_CASTEiJ_P0095655 Magix protein_coding protein_coding MGP_CASTEiJ_T0096965.1 MGP_CASTEiJ_G0034868.1 mouse_genomes_project X 75056694 75150018 + MGP_CASTEiJ_P0096965 Pcyt1b protein_coding protein_coding MGP_CASTEiJ_T0096966.1 MGP_CASTEiJ_G0034868.1 mouse_genomes_project X 75078208 75150018 + MGP_CASTEiJ_P0096966 Pcyt1b protein_coding protein_coding MGP_CASTEiJ_T0096967.1 MGP_CASTEiJ_G0034868.1 mouse_genomes_project X 75131639 75134922 + Pcyt1b protein_coding processed_transcript MGP_CASTEiJ_T0096502.1 MGP_CASTEiJ_G0034767.1 mouse_genomes_project X 54716357 54731299 + MGP_CASTEiJ_P0096502 protein_coding protein_coding MGP_CASTEiJ_T0102620.1 MGP_CASTEiJ_G0039344.1 mouse_genomes_project X 29579143 29579916 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0095906.1 MGP_CASTEiJ_G0034563.1 mouse_genomes_project X 12699111 12699956 + MGP_CASTEiJ_P0095906 Dusp21 protein_coding protein_coding MGP_CASTEiJ_T0101701.1 MGP_CASTEiJ_G0038523.1 mouse_genomes_project X 129827423 129829623 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101702.1 MGP_CASTEiJ_G0038523.1 mouse_genomes_project X 129827708 129828850 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0016004.1 MGP_CASTEiJ_G0014167.1 mouse_genomes_project X 96731658 96732512 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015746.1 MGP_CASTEiJ_G0013909.1 mouse_genomes_project X 46440603 46441461 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017849.1 MGP_CASTEiJ_G0015084.1 mouse_genomes_project X 2682120 2696275 + Gm6787 processed_transcript processed_transcript MGP_CASTEiJ_T0017912.1 MGP_CASTEiJ_G0015103.1 mouse_genomes_project X 112005283 112007790 - 4930570D08Rik processed_transcript processed_transcript MGP_CASTEiJ_T0015996.1 MGP_CASTEiJ_G0014159.1 mouse_genomes_project X 95762801 95763240 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098015.1 MGP_CASTEiJ_G0035166.1 mouse_genomes_project X 131824336 131827017 + MGP_CASTEiJ_P0098015 Samt4 protein_coding protein_coding MGP_CASTEiJ_T0015763.1 MGP_CASTEiJ_G0013926.1 mouse_genomes_project X 50069200 50070206 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100182.1 MGP_CASTEiJ_G0037095.1 mouse_genomes_project X 19802670 19802768 - Gm22364 snRNA snRNA MGP_CASTEiJ_T0095614.1 MGP_CASTEiJ_G0034492.1 mouse_genomes_project X 1910027 1914577 - MGP_CASTEiJ_P0095614 Usp27x protein_coding protein_coding MGP_CASTEiJ_T0095615.1 MGP_CASTEiJ_G0034492.1 mouse_genomes_project X 1911347 1914581 - MGP_CASTEiJ_P0095615 Usp27x protein_coding protein_coding MGP_CASTEiJ_T0009153.1 MGP_CASTEiJ_G0007364.1 mouse_genomes_project X 50235641 50246526 - Fmr1os lincRNA lincRNA MGP_CASTEiJ_T0016075.1 MGP_CASTEiJ_G0014238.1 mouse_genomes_project X 114714891 114717190 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097864.1 MGP_CASTEiJ_G0035135.1 mouse_genomes_project X 127952734 127964358 - MGP_CASTEiJ_P0097864 protein_coding protein_coding MGP_CASTEiJ_T0097865.1 MGP_CASTEiJ_G0035135.1 mouse_genomes_project X 127955350 127964382 - protein_coding processed_transcript MGP_CASTEiJ_T0016154.1 MGP_CASTEiJ_G0014317.1 mouse_genomes_project X 128076130 128076716 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010859.1 MGP_CASTEiJ_G0009047.1 mouse_genomes_project X 54128634 54128741 - Mir767 miRNA miRNA MGP_CASTEiJ_T0016066.1 MGP_CASTEiJ_G0014229.1 mouse_genomes_project X 112977840 112978703 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097739.1 MGP_CASTEiJ_G0035101.1 mouse_genomes_project X 118712966 118808174 + MGP_CASTEiJ_P0097739 Frmpd3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097740.1 MGP_CASTEiJ_G0035101.1 mouse_genomes_project X 118741930 118768208 + MGP_CASTEiJ_P0097740 Frmpd3 protein_coding protein_coding MGP_CASTEiJ_T0097741.1 MGP_CASTEiJ_G0035101.1 mouse_genomes_project X 118756406 118768853 + MGP_CASTEiJ_P0097741 Frmpd3 protein_coding protein_coding MGP_CASTEiJ_T0098703.1 MGP_CASTEiJ_G0035634.1 mouse_genomes_project X 134978071 134978165 - Gm23381 rRNA rRNA MGP_CASTEiJ_T0015737.1 MGP_CASTEiJ_G0013900.1 mouse_genomes_project X 44049338 44050055 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005462.1 MGP_CASTEiJ_G0004613.1 mouse_genomes_project X 128674821 128729470 - A230072E10Rik antisense antisense MGP_CASTEiJ_T0005463.1 MGP_CASTEiJ_G0004613.1 mouse_genomes_project X 128676071 128694776 - A230072E10Rik antisense antisense MGP_CASTEiJ_T0005464.1 MGP_CASTEiJ_G0004613.1 mouse_genomes_project X 128676071 128682119 - A230072E10Rik antisense antisense MGP_CASTEiJ_T0005465.1 MGP_CASTEiJ_G0004613.1 mouse_genomes_project X 128696702 128726498 - A230072E10Rik antisense antisense MGP_CASTEiJ_T0005449.1 MGP_CASTEiJ_G0004602.1 mouse_genomes_project X 57923959 57924544 - Gm14707 antisense antisense MGP_CASTEiJ_T0096257.1 MGP_CASTEiJ_G0034674.1 mouse_genomes_project X 33882042 33896142 - MGP_CASTEiJ_P0096257 Rap2c protein_coding protein_coding MGP_CASTEiJ_T0015995.1 MGP_CASTEiJ_G0014158.1 mouse_genomes_project X 95518309 95519670 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097278.1 MGP_CASTEiJ_G0034944.1 mouse_genomes_project X 84535783 84538248 - MGP_CASTEiJ_P0097278 Nap1l2 protein_coding protein_coding MGP_CASTEiJ_T0015933.1 MGP_CASTEiJ_G0014096.1 mouse_genomes_project X 84709986 84710410 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098230.1 MGP_CASTEiJ_G0035218.1 mouse_genomes_project X 142369953 142390315 + MGP_CASTEiJ_P0098230 Fancb protein_coding protein_coding MGP_CASTEiJ_T0098231.1 MGP_CASTEiJ_G0035218.1 mouse_genomes_project X 142369953 142390315 + MGP_CASTEiJ_P0098231 Fancb protein_coding protein_coding MGP_CASTEiJ_T0098232.1 MGP_CASTEiJ_G0035218.1 mouse_genomes_project X 142370073 142390318 + MGP_CASTEiJ_P0098232 Fancb protein_coding protein_coding MGP_CASTEiJ_T0101427.1 MGP_CASTEiJ_G0038340.1 mouse_genomes_project X 20499034 20499165 - Snora69 snoRNA snoRNA MGP_CASTEiJ_T0096268.1 MGP_CASTEiJ_G0034677.1 mouse_genomes_project X 34645316 34692622 - MGP_CASTEiJ_P0096268 Usp26 protein_coding protein_coding MGP_CASTEiJ_T0096269.1 MGP_CASTEiJ_G0034677.1 mouse_genomes_project X 34645316 34692533 - MGP_CASTEiJ_P0096269 Usp26 protein_coding protein_coding MGP_CASTEiJ_T0015888.1 MGP_CASTEiJ_G0014051.1 mouse_genomes_project X 76638877 76639870 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095749.1 MGP_CASTEiJ_G0034519.1 mouse_genomes_project X 2529230 2537658 - MGP_CASTEiJ_P0095749 Gata1 protein_coding protein_coding MGP_CASTEiJ_T0095750.1 MGP_CASTEiJ_G0034519.1 mouse_genomes_project X 2532211 2548995 - MGP_CASTEiJ_P0095750 Gata1 protein_coding protein_coding MGP_CASTEiJ_T0095751.1 MGP_CASTEiJ_G0034519.1 mouse_genomes_project X 2532800 2533924 - MGP_CASTEiJ_P0095751 Gata1 protein_coding protein_coding MGP_CASTEiJ_T0015632.1 MGP_CASTEiJ_G0013795.1 mouse_genomes_project X 19683600 19684096 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016089.1 MGP_CASTEiJ_G0014252.1 mouse_genomes_project X 115471248 115474032 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097301.1 MGP_CASTEiJ_G0034958.1 mouse_genomes_project X 86519730 86523284 + MGP_CASTEiJ_P0097301 Magee1 protein_coding protein_coding MGP_CASTEiJ_T0096845.1 MGP_CASTEiJ_G0034822.1 mouse_genomes_project X 57055004 57070539 + MGP_CASTEiJ_P0096845 Fundc2 protein_coding protein_coding MGP_CASTEiJ_T0096846.1 MGP_CASTEiJ_G0034822.1 mouse_genomes_project X 57055028 57060446 + Fundc2 protein_coding retained_intron MGP_CASTEiJ_T0096847.1 MGP_CASTEiJ_G0034822.1 mouse_genomes_project X 57060070 57068391 + Fundc2 protein_coding processed_transcript MGP_CASTEiJ_T0009162.1 MGP_CASTEiJ_G0007372.1 mouse_genomes_project X 78256348 78257193 - 1700003E24Rik lincRNA lincRNA MGP_CASTEiJ_T0095838.1 MGP_CASTEiJ_G0034543.1 mouse_genomes_project X 5059164 5168478 + Tspan7 protein_coding retained_intron MGP_CASTEiJ_T0095839.1 MGP_CASTEiJ_G0034543.1 mouse_genomes_project X 5059164 5168478 + MGP_CASTEiJ_P0095839 Tspan7 protein_coding protein_coding MGP_CASTEiJ_T0095840.1 MGP_CASTEiJ_G0034543.1 mouse_genomes_project X 5059164 5168478 + MGP_CASTEiJ_P0095840 Tspan7 protein_coding protein_coding MGP_CASTEiJ_T0100221.1 MGP_CASTEiJ_G0037134.1 mouse_genomes_project X 106092705 106092812 - Gm25061 snRNA snRNA MGP_CASTEiJ_T0101688.1 MGP_CASTEiJ_G0038513.1 mouse_genomes_project X 20239344 20239700 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101689.1 MGP_CASTEiJ_G0038513.1 mouse_genomes_project X 20239492 20239644 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0095913.1 MGP_CASTEiJ_G0034566.1 mouse_genomes_project X 14464524 14505045 + MGP_CASTEiJ_P0095913 Chst7 protein_coding protein_coding MGP_CASTEiJ_T0015963.1 MGP_CASTEiJ_G0014126.1 mouse_genomes_project X 88633313 88633776 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096041.1 MGP_CASTEiJ_G0034605.1 mouse_genomes_project X 20291491 20308462 - MGP_CASTEiJ_P0096041 Nkrf protein_coding protein_coding MGP_CASTEiJ_T0017859.1 MGP_CASTEiJ_G0015090.1 mouse_genomes_project X 33407546 33416597 - processed_transcript processed_transcript MGP_CASTEiJ_T0017860.1 MGP_CASTEiJ_G0015090.1 mouse_genomes_project X 33407546 33506031 - processed_transcript processed_transcript MGP_CASTEiJ_T0017861.1 MGP_CASTEiJ_G0015090.1 mouse_genomes_project X 33407553 33414581 - processed_transcript processed_transcript MGP_CASTEiJ_T0017862.1 MGP_CASTEiJ_G0015090.1 mouse_genomes_project X 33410058 33412742 - processed_transcript processed_transcript MGP_CASTEiJ_T0017863.1 MGP_CASTEiJ_G0015090.1 mouse_genomes_project X 33491806 33506073 - processed_transcript processed_transcript MGP_CASTEiJ_T0017864.1 MGP_CASTEiJ_G0015090.1 mouse_genomes_project X 33497231 33506091 - processed_transcript processed_transcript MGP_CASTEiJ_T0017865.1 MGP_CASTEiJ_G0015090.1 mouse_genomes_project X 33497231 33506081 - processed_transcript processed_transcript MGP_CASTEiJ_T0097388.1 MGP_CASTEiJ_G0034979.1 mouse_genomes_project X 89170157 89203469 - MGP_CASTEiJ_P0097388 2610002M06Rik protein_coding protein_coding MGP_CASTEiJ_T0098136.1 MGP_CASTEiJ_G0035194.1 mouse_genomes_project X 138529290 138635969 + MGP_CASTEiJ_P0098136 Scml2 protein_coding protein_coding MGP_CASTEiJ_T0098137.1 MGP_CASTEiJ_G0035194.1 mouse_genomes_project X 138529312 138637212 + MGP_CASTEiJ_P0098137 Scml2 protein_coding protein_coding MGP_CASTEiJ_T0098138.1 MGP_CASTEiJ_G0035194.1 mouse_genomes_project X 138529312 138637229 + MGP_CASTEiJ_P0098138 Scml2 protein_coding protein_coding MGP_CASTEiJ_T0098139.1 MGP_CASTEiJ_G0035194.1 mouse_genomes_project X 138529600 138633947 + MGP_CASTEiJ_P0098139 Scml2 protein_coding protein_coding MGP_CASTEiJ_T0098140.1 MGP_CASTEiJ_G0035194.1 mouse_genomes_project X 138608102 138614039 + Scml2 protein_coding processed_transcript MGP_CASTEiJ_T0098776.1 MGP_CASTEiJ_G0035707.1 mouse_genomes_project X 77520226 77520362 - Gm24718 scaRNA scaRNA MGP_CASTEiJ_T0097423.1 MGP_CASTEiJ_G0034992.1 mouse_genomes_project X 92682707 92683477 + MGP_CASTEiJ_P0097423 protein_coding protein_coding MGP_CASTEiJ_T0016097.1 MGP_CASTEiJ_G0014260.1 mouse_genomes_project X 118142907 118143013 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015634.1 MGP_CASTEiJ_G0013797.1 mouse_genomes_project X 20061300 20063271 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101429.1 MGP_CASTEiJ_G0038342.1 mouse_genomes_project X 39147410 39147481 - Snord61 snoRNA snoRNA MGP_CASTEiJ_T0015656.1 MGP_CASTEiJ_G0013819.1 mouse_genomes_project X 24964874 24966181 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010847.1 MGP_CASTEiJ_G0009035.1 mouse_genomes_project X 48427864 48427942 - Mir881 miRNA miRNA MGP_CASTEiJ_T0097049.1 MGP_CASTEiJ_G0034889.1 mouse_genomes_project X 77662876 77784059 - MGP_CASTEiJ_P0097049 Hsf3 protein_coding protein_coding MGP_CASTEiJ_T0097050.1 MGP_CASTEiJ_G0034889.1 mouse_genomes_project X 77663565 77708267 - MGP_CASTEiJ_P0097050 Hsf3 protein_coding protein_coding MGP_CASTEiJ_T0097051.1 MGP_CASTEiJ_G0034889.1 mouse_genomes_project X 77663975 77784048 - MGP_CASTEiJ_P0097051 Hsf3 protein_coding protein_coding MGP_CASTEiJ_T0097052.1 MGP_CASTEiJ_G0034889.1 mouse_genomes_project X 77664133 77721817 - MGP_CASTEiJ_P0097052 Hsf3 protein_coding protein_coding MGP_CASTEiJ_T0097053.1 MGP_CASTEiJ_G0034889.1 mouse_genomes_project X 77674596 77694907 - Hsf3 protein_coding retained_intron MGP_CASTEiJ_T0011446.1 MGP_CASTEiJ_G0009634.1 mouse_genomes_project X 116062854 116063139 - Gm25393 misc_RNA misc_RNA MGP_CASTEiJ_T0016164.1 MGP_CASTEiJ_G0014327.1 mouse_genomes_project X 130602188 130602462 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096488.1 MGP_CASTEiJ_G0034760.1 mouse_genomes_project X 54345386 54362774 + MGP_CASTEiJ_P0096488 Gabrq protein_coding protein_coding MGP_CASTEiJ_T0096489.1 MGP_CASTEiJ_G0034760.1 mouse_genomes_project X 54345649 54358744 + MGP_CASTEiJ_P0096489 Gabrq protein_coding protein_coding MGP_CASTEiJ_T0016087.1 MGP_CASTEiJ_G0014250.1 mouse_genomes_project X 115395347 115397096 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016203.1 MGP_CASTEiJ_G0014366.1 mouse_genomes_project X 137622113 137622376 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015869.1 MGP_CASTEiJ_G0014032.1 mouse_genomes_project X 75321836 75323504 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095945.1 MGP_CASTEiJ_G0034574.1 mouse_genomes_project X 15090245 15102148 + MGP_CASTEiJ_P0095945 Cdk16 protein_coding protein_coding MGP_CASTEiJ_T0095946.1 MGP_CASTEiJ_G0034574.1 mouse_genomes_project X 15090290 15096643 + Cdk16 protein_coding processed_transcript MGP_CASTEiJ_T0095947.1 MGP_CASTEiJ_G0034574.1 mouse_genomes_project X 15090709 15102148 + MGP_CASTEiJ_P0095947 Cdk16 protein_coding protein_coding MGP_CASTEiJ_T0095948.1 MGP_CASTEiJ_G0034574.1 mouse_genomes_project X 15096563 15098568 + Cdk16 protein_coding retained_intron MGP_CASTEiJ_T0095949.1 MGP_CASTEiJ_G0034574.1 mouse_genomes_project X 15098143 15098771 + Cdk16 protein_coding retained_intron MGP_CASTEiJ_T0095950.1 MGP_CASTEiJ_G0034574.1 mouse_genomes_project X 15098300 15099494 + Cdk16 protein_coding retained_intron MGP_CASTEiJ_T0095951.1 MGP_CASTEiJ_G0034574.1 mouse_genomes_project X 15098690 15099453 + Cdk16 protein_coding retained_intron MGP_CASTEiJ_T0095952.1 MGP_CASTEiJ_G0034574.1 mouse_genomes_project X 15098730 15102068 + Cdk16 protein_coding processed_transcript MGP_CASTEiJ_T0017858.1 MGP_CASTEiJ_G0015089.1 mouse_genomes_project X 23364305 23755445 + processed_transcript processed_transcript MGP_CASTEiJ_T0016177.1 MGP_CASTEiJ_G0014340.1 mouse_genomes_project X 132692086 132693637 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097027.1 MGP_CASTEiJ_G0034881.1 mouse_genomes_project X 76797607 76819310 - MGP_CASTEiJ_P0097027 Amer1 protein_coding protein_coding MGP_CASTEiJ_T0097130.1 MGP_CASTEiJ_G0034911.1 mouse_genomes_project X 81820113 81924286 + MGP_CASTEiJ_P0097130 Kif4 protein_coding protein_coding MGP_CASTEiJ_T0097131.1 MGP_CASTEiJ_G0034911.1 mouse_genomes_project X 81830785 81833120 + Kif4 protein_coding retained_intron MGP_CASTEiJ_T0097132.1 MGP_CASTEiJ_G0034911.1 mouse_genomes_project X 81909303 81921727 + Kif4 protein_coding processed_transcript MGP_CASTEiJ_T0097230.1 MGP_CASTEiJ_G0034930.1 mouse_genomes_project X 83032530 83041617 + MGP_CASTEiJ_P0097230 8030474K03Rik protein_coding protein_coding MGP_CASTEiJ_T0097231.1 MGP_CASTEiJ_G0034930.1 mouse_genomes_project X 83032530 83041617 + MGP_CASTEiJ_P0097231 8030474K03Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097232.1 MGP_CASTEiJ_G0034930.1 mouse_genomes_project X 83034463 83041621 + MGP_CASTEiJ_P0097232 8030474K03Rik protein_coding protein_coding MGP_CASTEiJ_T0096952.1 MGP_CASTEiJ_G0034862.1 mouse_genomes_project X 72242159 72243152 + MGP_CASTEiJ_P0096952 Gm44 protein_coding protein_coding MGP_CASTEiJ_T0010899.1 MGP_CASTEiJ_G0009087.1 mouse_genomes_project X 125329560 125329658 + Mir1298 miRNA miRNA MGP_CASTEiJ_T0005451.1 MGP_CASTEiJ_G0004604.1 mouse_genomes_project X 75444063 75521400 + Gm14798 antisense antisense MGP_CASTEiJ_T0101475.1 MGP_CASTEiJ_G0038388.1 mouse_genomes_project X 140117547 140117668 + Gm23786 snoRNA snoRNA MGP_CASTEiJ_T0097984.1 MGP_CASTEiJ_G0035153.1 mouse_genomes_project X 129938803 129939439 + MGP_CASTEiJ_P0097984 Cldn34a protein_coding protein_coding MGP_CASTEiJ_T0015615.1 MGP_CASTEiJ_G0013778.1 mouse_genomes_project X 14860495 14860691 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015967.1 MGP_CASTEiJ_G0014130.1 mouse_genomes_project X 88800256 88800574 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015919.1 MGP_CASTEiJ_G0014082.1 mouse_genomes_project X 83487279 83487636 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100230.1 MGP_CASTEiJ_G0037143.1 mouse_genomes_project X 128645462 128645566 - Gm26441 snRNA snRNA MGP_CASTEiJ_T0009166.1 MGP_CASTEiJ_G0007376.1 mouse_genomes_project X 84843439 84850604 - Xist lincRNA lincRNA MGP_CASTEiJ_T0009167.1 MGP_CASTEiJ_G0007376.1 mouse_genomes_project X 84844473 84867656 - Xist lincRNA lincRNA MGP_CASTEiJ_T0009168.1 MGP_CASTEiJ_G0007376.1 mouse_genomes_project X 84852771 84853723 - Xist lincRNA lincRNA MGP_CASTEiJ_T0016010.1 MGP_CASTEiJ_G0014173.1 mouse_genomes_project X 98452913 98454606 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102629.1 MGP_CASTEiJ_G0039353.1 mouse_genomes_project X 56433503 56434370 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102647.1 MGP_CASTEiJ_G0039371.1 mouse_genomes_project X 83997351 83999241 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015985.1 MGP_CASTEiJ_G0014148.1 mouse_genomes_project X 93855353 93856977 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010878.1 MGP_CASTEiJ_G0009066.1 mouse_genomes_project X 85480276 85480367 + Gm24993 miRNA miRNA MGP_CASTEiJ_T0016173.1 MGP_CASTEiJ_G0014336.1 mouse_genomes_project X 132505156 132506157 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095735.1 MGP_CASTEiJ_G0034514.1 mouse_genomes_project X 2473565 2473709 - MGP_CASTEiJ_P0095735 protein_coding protein_coding MGP_CASTEiJ_T0101877.1 MGP_CASTEiJ_G0038607.1 mouse_genomes_project X 84534578 84615203 - unitary_pseudogene processed_transcript MGP_CASTEiJ_T0101878.1 MGP_CASTEiJ_G0038607.1 mouse_genomes_project X 84587768 84615203 - unitary_pseudogene unitary_pseudogene MGP_CASTEiJ_T0101879.1 MGP_CASTEiJ_G0038607.1 mouse_genomes_project X 84587768 84679576 - unitary_pseudogene processed_transcript MGP_CASTEiJ_T0101880.1 MGP_CASTEiJ_G0038607.1 mouse_genomes_project X 84587834 84611626 - unitary_pseudogene processed_transcript MGP_CASTEiJ_T0101881.1 MGP_CASTEiJ_G0038607.1 mouse_genomes_project X 84589124 84615195 - unitary_pseudogene retained_intron MGP_CASTEiJ_T0101882.1 MGP_CASTEiJ_G0038607.1 mouse_genomes_project X 84590675 84651275 - unitary_pseudogene processed_transcript MGP_CASTEiJ_T0016041.1 MGP_CASTEiJ_G0014204.1 mouse_genomes_project X 106236294 106239098 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016178.1 MGP_CASTEiJ_G0014341.1 mouse_genomes_project X 132854653 132855225 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005423.1 MGP_CASTEiJ_G0004583.1 mouse_genomes_project X 2624735 2655417 + Gm14820 antisense antisense MGP_CASTEiJ_T0005424.1 MGP_CASTEiJ_G0004583.1 mouse_genomes_project X 2631148 2641692 + Gm14820 antisense antisense MGP_CASTEiJ_T0005425.1 MGP_CASTEiJ_G0004583.1 mouse_genomes_project X 2631224 2656135 + Gm14820 antisense antisense MGP_CASTEiJ_T0005426.1 MGP_CASTEiJ_G0004583.1 mouse_genomes_project X 2631304 2657806 + Gm14820 antisense antisense MGP_CASTEiJ_T0005427.1 MGP_CASTEiJ_G0004583.1 mouse_genomes_project X 2633499 2656132 + Gm14820 antisense antisense MGP_CASTEiJ_T0015875.1 MGP_CASTEiJ_G0014038.1 mouse_genomes_project X 75761960 75762861 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098113.1 MGP_CASTEiJ_G0035189.1 mouse_genomes_project X 137859339 137884358 + MGP_CASTEiJ_P0098113 Phka2 protein_coding protein_coding MGP_CASTEiJ_T0098114.1 MGP_CASTEiJ_G0035189.1 mouse_genomes_project X 137859602 137886397 + Phka2 protein_coding retained_intron MGP_CASTEiJ_T0098115.1 MGP_CASTEiJ_G0035189.1 mouse_genomes_project X 137859602 137942480 + MGP_CASTEiJ_P0098115 Phka2 protein_coding protein_coding MGP_CASTEiJ_T0098116.1 MGP_CASTEiJ_G0035189.1 mouse_genomes_project X 137859633 137908820 + MGP_CASTEiJ_P0098116 Phka2 protein_coding protein_coding MGP_CASTEiJ_T0098117.1 MGP_CASTEiJ_G0035189.1 mouse_genomes_project X 137859989 137936812 + MGP_CASTEiJ_P0098117 Phka2 protein_coding protein_coding MGP_CASTEiJ_T0098118.1 MGP_CASTEiJ_G0035189.1 mouse_genomes_project X 137879927 137891330 + Phka2 protein_coding processed_transcript MGP_CASTEiJ_T0098119.1 MGP_CASTEiJ_G0035189.1 mouse_genomes_project X 137879937 137891325 + Phka2 protein_coding processed_transcript MGP_CASTEiJ_T0098120.1 MGP_CASTEiJ_G0035189.1 mouse_genomes_project X 137887482 137936844 + Phka2 protein_coding processed_transcript MGP_CASTEiJ_T0098121.1 MGP_CASTEiJ_G0035189.1 mouse_genomes_project X 137907651 137912230 + Phka2 protein_coding processed_transcript MGP_CASTEiJ_T0015798.1 MGP_CASTEiJ_G0013961.1 mouse_genomes_project X 58883611 58884140 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098177.1 MGP_CASTEiJ_G0035202.1 mouse_genomes_project X 140341937 140344530 - MGP_CASTEiJ_P0098177 S100g protein_coding protein_coding MGP_CASTEiJ_T0015781.1 MGP_CASTEiJ_G0013944.1 mouse_genomes_project X 55931817 55932033 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009129.1 MGP_CASTEiJ_G0007348.1 mouse_genomes_project X 7927096 7928736 - 2010308F09Rik lincRNA lincRNA MGP_CASTEiJ_T0009130.1 MGP_CASTEiJ_G0007348.1 mouse_genomes_project X 7927139 7941272 - 2010308F09Rik lincRNA lincRNA MGP_CASTEiJ_T0015727.1 MGP_CASTEiJ_G0013890.1 mouse_genomes_project X 42814131 42815284 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015612.1 MGP_CASTEiJ_G0013775.1 mouse_genomes_project X 14742953 14743359 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095807.1 MGP_CASTEiJ_G0034531.1 mouse_genomes_project X 3657152 3658934 + MGP_CASTEiJ_P0095807 4930402K13Rik protein_coding protein_coding MGP_CASTEiJ_T0017932.1 MGP_CASTEiJ_G0015113.1 mouse_genomes_project X 130404995 130449391 + 9530051G07Rik processed_transcript processed_transcript MGP_CASTEiJ_T0097996.1 MGP_CASTEiJ_G0035157.1 mouse_genomes_project X 130403532 130404942 - MGP_CASTEiJ_P0097996 Mageh1 protein_coding protein_coding MGP_CASTEiJ_T0097526.1 MGP_CASTEiJ_G0035030.1 mouse_genomes_project X 112427423 112484288 + MGP_CASTEiJ_P0097526 Cenpi protein_coding protein_coding MGP_CASTEiJ_T0097527.1 MGP_CASTEiJ_G0035030.1 mouse_genomes_project X 112427494 112484285 + MGP_CASTEiJ_P0097527 Cenpi protein_coding protein_coding MGP_CASTEiJ_T0097528.1 MGP_CASTEiJ_G0035030.1 mouse_genomes_project X 112427538 112429590 + MGP_CASTEiJ_P0097528 Cenpi protein_coding protein_coding MGP_CASTEiJ_T0097529.1 MGP_CASTEiJ_G0035030.1 mouse_genomes_project X 112432082 112465418 + Cenpi protein_coding processed_transcript MGP_CASTEiJ_T0097530.1 MGP_CASTEiJ_G0035030.1 mouse_genomes_project X 112467305 112484286 + Cenpi protein_coding processed_transcript MGP_CASTEiJ_T0015580.1 MGP_CASTEiJ_G0013743.1 mouse_genomes_project X 7325589 7325949 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005460.1 MGP_CASTEiJ_G0004612.1 mouse_genomes_project X 122766939 122789899 + antisense antisense MGP_CASTEiJ_T0005461.1 MGP_CASTEiJ_G0004612.1 mouse_genomes_project X 122782675 122789896 + antisense antisense MGP_CASTEiJ_T0015626.1 MGP_CASTEiJ_G0013789.1 mouse_genomes_project X 16853868 16854352 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097520.1 MGP_CASTEiJ_G0035028.1 mouse_genomes_project X 112336390 112393168 - MGP_CASTEiJ_P0097520 Trmt2b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097521.1 MGP_CASTEiJ_G0035028.1 mouse_genomes_project X 112337146 112393168 - MGP_CASTEiJ_P0097521 Trmt2b protein_coding protein_coding MGP_CASTEiJ_T0097522.1 MGP_CASTEiJ_G0035028.1 mouse_genomes_project X 112337147 112393113 - Trmt2b protein_coding retained_intron MGP_CASTEiJ_T0097523.1 MGP_CASTEiJ_G0035028.1 mouse_genomes_project X 112337151 112393106 - MGP_CASTEiJ_P0097523 Trmt2b protein_coding protein_coding MGP_CASTEiJ_T0097524.1 MGP_CASTEiJ_G0035028.1 mouse_genomes_project X 112376312 112393170 - MGP_CASTEiJ_P0097524 Trmt2b protein_coding protein_coding MGP_CASTEiJ_T0095895.1 MGP_CASTEiJ_G0034557.1 mouse_genomes_project X 11119153 11121590 - MGP_CASTEiJ_P0095895 protein_coding protein_coding MGP_CASTEiJ_T0015731.1 MGP_CASTEiJ_G0013894.1 mouse_genomes_project X 43306210 43306788 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015793.1 MGP_CASTEiJ_G0013956.1 mouse_genomes_project X 58070088 58070392 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098085.1 MGP_CASTEiJ_G0035185.1 mouse_genomes_project X 136971993 137319152 + MGP_CASTEiJ_P0098085 Sh3kbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0098086.1 MGP_CASTEiJ_G0035185.1 mouse_genomes_project X 136972180 137324099 + MGP_CASTEiJ_P0098086 Sh3kbp1 protein_coding protein_coding MGP_CASTEiJ_T0098087.1 MGP_CASTEiJ_G0035185.1 mouse_genomes_project X 136972450 137263901 + Sh3kbp1 protein_coding retained_intron MGP_CASTEiJ_T0098088.1 MGP_CASTEiJ_G0035185.1 mouse_genomes_project X 137034716 137207310 + MGP_CASTEiJ_P0098088 Sh3kbp1 protein_coding protein_coding MGP_CASTEiJ_T0098089.1 MGP_CASTEiJ_G0035185.1 mouse_genomes_project X 137046503 137319853 + MGP_CASTEiJ_P0098089 Sh3kbp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098090.1 MGP_CASTEiJ_G0035185.1 mouse_genomes_project X 137046503 137320155 + MGP_CASTEiJ_P0098090 Sh3kbp1 protein_coding protein_coding MGP_CASTEiJ_T0098091.1 MGP_CASTEiJ_G0035185.1 mouse_genomes_project X 137180536 137321668 + MGP_CASTEiJ_P0098091 Sh3kbp1 protein_coding protein_coding MGP_CASTEiJ_T0098092.1 MGP_CASTEiJ_G0035185.1 mouse_genomes_project X 137180549 137320155 + MGP_CASTEiJ_P0098092 Sh3kbp1 protein_coding protein_coding MGP_CASTEiJ_T0098093.1 MGP_CASTEiJ_G0035185.1 mouse_genomes_project X 137181034 137321920 + Sh3kbp1 protein_coding processed_transcript MGP_CASTEiJ_T0098094.1 MGP_CASTEiJ_G0035185.1 mouse_genomes_project X 137262674 137319305 + MGP_CASTEiJ_P0098094 Sh3kbp1 protein_coding protein_coding MGP_CASTEiJ_T0098095.1 MGP_CASTEiJ_G0035185.1 mouse_genomes_project X 137286897 137317921 + Sh3kbp1 protein_coding processed_transcript MGP_CASTEiJ_T0098096.1 MGP_CASTEiJ_G0035185.1 mouse_genomes_project X 137287893 137321921 + Sh3kbp1 protein_coding processed_transcript MGP_CASTEiJ_T0098097.1 MGP_CASTEiJ_G0035185.1 mouse_genomes_project X 137288112 137320155 + Sh3kbp1 protein_coding processed_transcript MGP_CASTEiJ_T0098098.1 MGP_CASTEiJ_G0035185.1 mouse_genomes_project X 137288218 137319176 + Sh3kbp1 protein_coding processed_transcript MGP_CASTEiJ_T0016222.1 MGP_CASTEiJ_G0014385.1 mouse_genomes_project X 143043839 143044218 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101433.1 MGP_CASTEiJ_G0038346.1 mouse_genomes_project X 52251743 52251875 + Gm22785 snoRNA snoRNA MGP_CASTEiJ_T0096024.1 MGP_CASTEiJ_G0034598.1 mouse_genomes_project X 19795344 19796523 + MGP_CASTEiJ_P0096024 protein_coding protein_coding MGP_CASTEiJ_T0015928.1 MGP_CASTEiJ_G0014091.1 mouse_genomes_project X 84585450 84585898 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096485.1 MGP_CASTEiJ_G0034759.1 mouse_genomes_project X 53977746 54189803 - MGP_CASTEiJ_P0096485 Gabra3 protein_coding protein_coding MGP_CASTEiJ_T0096486.1 MGP_CASTEiJ_G0034759.1 mouse_genomes_project X 53979644 54190265 - MGP_CASTEiJ_P0096486 Gabra3 protein_coding protein_coding MGP_CASTEiJ_T0096487.1 MGP_CASTEiJ_G0034759.1 mouse_genomes_project X 54051023 54189803 - Gabra3 protein_coding processed_transcript MGP_CASTEiJ_T0009195.1 MGP_CASTEiJ_G0007391.1 mouse_genomes_project X 128220481 128221022 - Gm27191 lincRNA lincRNA MGP_CASTEiJ_T0005444.1 MGP_CASTEiJ_G0004597.1 mouse_genomes_project X 51483638 51687570 - antisense antisense MGP_CASTEiJ_T0015713.1 MGP_CASTEiJ_G0013876.1 mouse_genomes_project X 40143480 40143897 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015723.1 MGP_CASTEiJ_G0013886.1 mouse_genomes_project X 42405863 42406923 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097244.1 MGP_CASTEiJ_G0034933.1 mouse_genomes_project X 83381307 83390390 + MGP_CASTEiJ_P0097244 Pin4 protein_coding protein_coding MGP_CASTEiJ_T0097245.1 MGP_CASTEiJ_G0034933.1 mouse_genomes_project X 83381429 83390387 + Pin4 protein_coding processed_transcript MGP_CASTEiJ_T0016053.1 MGP_CASTEiJ_G0014216.1 mouse_genomes_project X 110019957 110022167 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015607.1 MGP_CASTEiJ_G0013770.1 mouse_genomes_project X 13441057 13441674 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097764.1 MGP_CASTEiJ_G0035110.1 mouse_genomes_project X 119462793 119793801 - MGP_CASTEiJ_P0097764 Col4a6 protein_coding protein_coding MGP_CASTEiJ_T0097765.1 MGP_CASTEiJ_G0035110.1 mouse_genomes_project X 119484763 119506117 - Col4a6 protein_coding processed_transcript MGP_CASTEiJ_T0097766.1 MGP_CASTEiJ_G0035110.1 mouse_genomes_project X 119488299 119491181 - Col4a6 protein_coding retained_intron MGP_CASTEiJ_T0015764.1 MGP_CASTEiJ_G0013927.1 mouse_genomes_project X 50177761 50178109 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015973.1 MGP_CASTEiJ_G0014136.1 mouse_genomes_project X 91789625 91790769 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096161.1 MGP_CASTEiJ_G0034646.1 mouse_genomes_project X 28197783 28199671 + MGP_CASTEiJ_P0096161 Prr32 protein_coding protein_coding MGP_CASTEiJ_T0015694.1 MGP_CASTEiJ_G0013857.1 mouse_genomes_project X 34516964 34517162 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015700.1 MGP_CASTEiJ_G0013863.1 mouse_genomes_project X 36494163 36494723 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015594.1 MGP_CASTEiJ_G0013757.1 mouse_genomes_project X 9608615 9609354 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096010.1 MGP_CASTEiJ_G0034593.1 mouse_genomes_project X 18299211 18300444 - MGP_CASTEiJ_P0096010 Gm4985 protein_coding protein_coding MGP_CASTEiJ_T0016060.1 MGP_CASTEiJ_G0014223.1 mouse_genomes_project X 111527052 111527788 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015825.1 MGP_CASTEiJ_G0013988.1 mouse_genomes_project X 67057678 67058264 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096304.1 MGP_CASTEiJ_G0034700.1 mouse_genomes_project X 38160817 38217678 + Ddx26b protein_coding processed_transcript MGP_CASTEiJ_T0096305.1 MGP_CASTEiJ_G0034700.1 mouse_genomes_project X 38160837 38217677 + MGP_CASTEiJ_P0096305 Ddx26b protein_coding protein_coding MGP_CASTEiJ_T0096306.1 MGP_CASTEiJ_G0034700.1 mouse_genomes_project X 38160840 38205610 + MGP_CASTEiJ_P0096306 Ddx26b protein_coding protein_coding MGP_CASTEiJ_T0096307.1 MGP_CASTEiJ_G0034700.1 mouse_genomes_project X 38160845 38217681 + MGP_CASTEiJ_P0096307 Ddx26b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096308.1 MGP_CASTEiJ_G0034700.1 mouse_genomes_project X 38160845 38217678 + MGP_CASTEiJ_P0096308 Ddx26b protein_coding protein_coding MGP_CASTEiJ_T0096309.1 MGP_CASTEiJ_G0034700.1 mouse_genomes_project X 38193634 38217676 + MGP_CASTEiJ_P0096309 Ddx26b protein_coding protein_coding MGP_CASTEiJ_T0096310.1 MGP_CASTEiJ_G0034700.1 mouse_genomes_project X 38214938 38217523 + MGP_CASTEiJ_P0096310 Ddx26b protein_coding protein_coding MGP_CASTEiJ_T0016030.1 MGP_CASTEiJ_G0014193.1 mouse_genomes_project X 102684255 102687179 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100197.1 MGP_CASTEiJ_G0037110.1 mouse_genomes_project X 48356949 48357088 + Gm23000 snRNA snRNA MGP_CASTEiJ_T0015629.1 MGP_CASTEiJ_G0013792.1 mouse_genomes_project X 19165820 19167053 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102659.1 MGP_CASTEiJ_G0039383.1 mouse_genomes_project X 147353102 147355969 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0096759.1 MGP_CASTEiJ_G0034805.1 mouse_genomes_project X 56008117 56010359 - MGP_CASTEiJ_P0096759 Lage3 protein_coding protein_coding MGP_CASTEiJ_T0096760.1 MGP_CASTEiJ_G0034805.1 mouse_genomes_project X 56009002 56010359 - MGP_CASTEiJ_P0096760 Lage3 protein_coding protein_coding MGP_CASTEiJ_T0096761.1 MGP_CASTEiJ_G0034805.1 mouse_genomes_project X 56009003 56010359 - MGP_CASTEiJ_P0096761 Lage3 protein_coding protein_coding MGP_CASTEiJ_T0015561.1 MGP_CASTEiJ_G0013724.1 mouse_genomes_project X 2442334 2443605 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097674.1 MGP_CASTEiJ_G0035081.1 mouse_genomes_project X 115302973 115337276 + MGP_CASTEiJ_P0097674 Fam199x protein_coding protein_coding MGP_CASTEiJ_T0097675.1 MGP_CASTEiJ_G0035081.1 mouse_genomes_project X 115303196 115337275 + MGP_CASTEiJ_P0097675 Fam199x protein_coding unknown_likely_coding MGP_CASTEiJ_T0010905.1 MGP_CASTEiJ_G0009093.1 mouse_genomes_project X 129287667 129287775 + Mir98 miRNA miRNA MGP_CASTEiJ_T0096873.1 MGP_CASTEiJ_G0034830.1 mouse_genomes_project X 57960232 57963662 + MGP_CASTEiJ_P0096873 protein_coding protein_coding MGP_CASTEiJ_T0015740.1 MGP_CASTEiJ_G0013903.1 mouse_genomes_project X 44380493 44381221 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015856.1 MGP_CASTEiJ_G0014019.1 mouse_genomes_project X 72654835 72655781 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017930.1 MGP_CASTEiJ_G0015112.1 mouse_genomes_project X 129773376 129810888 + 3010001F23Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017931.1 MGP_CASTEiJ_G0015112.1 mouse_genomes_project X 129774190 129791296 + 3010001F23Rik processed_transcript processed_transcript MGP_CASTEiJ_T0095811.1 MGP_CASTEiJ_G0034535.1 mouse_genomes_project X 4055999 4090634 - MGP_CASTEiJ_P0095811 Cybb protein_coding protein_coding MGP_CASTEiJ_T0095812.1 MGP_CASTEiJ_G0034535.1 mouse_genomes_project X 4068257 4090579 - MGP_CASTEiJ_P0095812 Cybb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095813.1 MGP_CASTEiJ_G0034535.1 mouse_genomes_project X 4070714 4072871 - Cybb protein_coding retained_intron MGP_CASTEiJ_T0095814.1 MGP_CASTEiJ_G0034535.1 mouse_genomes_project X 4078353 4103435 - MGP_CASTEiJ_P0095814 Cybb protein_coding protein_coding MGP_CASTEiJ_T0095815.1 MGP_CASTEiJ_G0034535.1 mouse_genomes_project X 4086287 4090580 - Cybb protein_coding retained_intron MGP_CASTEiJ_T0016034.1 MGP_CASTEiJ_G0014197.1 mouse_genomes_project X 103275872 103276175 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015761.1 MGP_CASTEiJ_G0013924.1 mouse_genomes_project X 49910818 49911184 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015672.1 MGP_CASTEiJ_G0013835.1 mouse_genomes_project X 28852186 28852421 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096890.1 MGP_CASTEiJ_G0034843.1 mouse_genomes_project X 59901920 59903406 + MGP_CASTEiJ_P0096890 4930480E11Rik protein_coding protein_coding MGP_CASTEiJ_T0095902.1 MGP_CASTEiJ_G0034561.1 mouse_genomes_project X 11679641 11870602 - MGP_CASTEiJ_P0095902 Efhc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097893.1 MGP_CASTEiJ_G0035139.1 mouse_genomes_project X 128355853 128390779 - MGP_CASTEiJ_P0097893 Gnl3l protein_coding protein_coding MGP_CASTEiJ_T0097894.1 MGP_CASTEiJ_G0035139.1 mouse_genomes_project X 128355853 128390779 - MGP_CASTEiJ_P0097894 Gnl3l protein_coding protein_coding MGP_CASTEiJ_T0097895.1 MGP_CASTEiJ_G0035139.1 mouse_genomes_project X 128360414 128366590 - Gnl3l protein_coding retained_intron MGP_CASTEiJ_T0097896.1 MGP_CASTEiJ_G0035139.1 mouse_genomes_project X 128370517 128373120 - Gnl3l protein_coding retained_intron MGP_CASTEiJ_T0097897.1 MGP_CASTEiJ_G0035139.1 mouse_genomes_project X 128370887 128390779 - MGP_CASTEiJ_P0097897 Gnl3l protein_coding protein_coding MGP_CASTEiJ_T0097898.1 MGP_CASTEiJ_G0035139.1 mouse_genomes_project X 128375538 128390779 - MGP_CASTEiJ_P0097898 Gnl3l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097899.1 MGP_CASTEiJ_G0035139.1 mouse_genomes_project X 128375582 128390779 - MGP_CASTEiJ_P0097899 Gnl3l protein_coding protein_coding MGP_CASTEiJ_T0098179.1 MGP_CASTEiJ_G0035203.1 mouse_genomes_project X 140896793 140936222 - MGP_CASTEiJ_P0098179 Grpr protein_coding protein_coding MGP_CASTEiJ_T0016159.1 MGP_CASTEiJ_G0014322.1 mouse_genomes_project X 128878099 128878255 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009139.1 MGP_CASTEiJ_G0007354.1 mouse_genomes_project X 15787613 15791359 - Gm26593 lincRNA lincRNA MGP_CASTEiJ_T0096462.1 MGP_CASTEiJ_G0034749.1 mouse_genomes_project X 53120258 53122583 + MGP_CASTEiJ_P0096462 Hmgb3 protein_coding protein_coding MGP_CASTEiJ_T0096463.1 MGP_CASTEiJ_G0034749.1 mouse_genomes_project X 53121087 53122582 + Hmgb3 protein_coding retained_intron MGP_CASTEiJ_T0095597.1 MGP_CASTEiJ_G0034486.1 mouse_genomes_project X 858507 865210 - MGP_CASTEiJ_P0095597 Bmp15 protein_coding protein_coding MGP_CASTEiJ_T0015738.1 MGP_CASTEiJ_G0013901.1 mouse_genomes_project X 44324777 44325607 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095732.1 MGP_CASTEiJ_G0034513.1 mouse_genomes_project X 2464318 2474228 + MGP_CASTEiJ_P0095732 Timm17b protein_coding protein_coding MGP_CASTEiJ_T0095733.1 MGP_CASTEiJ_G0034513.1 mouse_genomes_project X 2464632 2472199 + MGP_CASTEiJ_P0095733 Timm17b protein_coding protein_coding MGP_CASTEiJ_T0095734.1 MGP_CASTEiJ_G0034513.1 mouse_genomes_project X 2471982 2472843 + Timm17b protein_coding retained_intron MGP_CASTEiJ_T0015797.1 MGP_CASTEiJ_G0013960.1 mouse_genomes_project X 58880744 58881719 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015916.1 MGP_CASTEiJ_G0014079.1 mouse_genomes_project X 83455094 83455570 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097479.1 MGP_CASTEiJ_G0035017.1 mouse_genomes_project X 106555712 106557574 + MGP_CASTEiJ_P0097479 Rbm31y protein_coding protein_coding MGP_CASTEiJ_T0096762.1 MGP_CASTEiJ_G0034806.1 mouse_genomes_project X 56022280 56025236 - MGP_CASTEiJ_P0096762 Ubl4a protein_coding protein_coding MGP_CASTEiJ_T0096763.1 MGP_CASTEiJ_G0034806.1 mouse_genomes_project X 56022281 56025121 - Ubl4a protein_coding processed_transcript MGP_CASTEiJ_T0096764.1 MGP_CASTEiJ_G0034806.1 mouse_genomes_project X 56023834 56025029 - MGP_CASTEiJ_P0096764 Ubl4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096765.1 MGP_CASTEiJ_G0034806.1 mouse_genomes_project X 56023872 56025059 - Ubl4a protein_coding retained_intron MGP_CASTEiJ_T0096766.1 MGP_CASTEiJ_G0034806.1 mouse_genomes_project X 56024027 56029757 - MGP_CASTEiJ_P0096766 Ubl4a protein_coding protein_coding MGP_CASTEiJ_T0096767.1 MGP_CASTEiJ_G0034806.1 mouse_genomes_project X 56024305 56025076 - Ubl4a protein_coding retained_intron MGP_CASTEiJ_T0096768.1 MGP_CASTEiJ_G0034806.1 mouse_genomes_project X 56024359 56025066 - Ubl4a protein_coding processed_transcript MGP_CASTEiJ_T0015801.1 MGP_CASTEiJ_G0013964.1 mouse_genomes_project X 59341747 59342516 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016184.1 MGP_CASTEiJ_G0014347.1 mouse_genomes_project X 134861984 134862138 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016162.1 MGP_CASTEiJ_G0014325.1 mouse_genomes_project X 129923463 129924364 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096076.1 MGP_CASTEiJ_G0034625.1 mouse_genomes_project X 21512111 21520103 + MGP_CASTEiJ_P0096076 Zbtb33 protein_coding protein_coding MGP_CASTEiJ_T0096077.1 MGP_CASTEiJ_G0034625.1 mouse_genomes_project X 21512130 21516995 + MGP_CASTEiJ_P0096077 Zbtb33 protein_coding protein_coding MGP_CASTEiJ_T0096078.1 MGP_CASTEiJ_G0034625.1 mouse_genomes_project X 21512152 21516379 + MGP_CASTEiJ_P0096078 Zbtb33 protein_coding protein_coding MGP_CASTEiJ_T0097579.1 MGP_CASTEiJ_G0035043.1 mouse_genomes_project X 113089464 113102738 - Nxf2 protein_coding retained_intron MGP_CASTEiJ_T0097580.1 MGP_CASTEiJ_G0035043.1 mouse_genomes_project X 113089466 113111820 - MGP_CASTEiJ_P0097580 Nxf2 protein_coding protein_coding MGP_CASTEiJ_T0097581.1 MGP_CASTEiJ_G0035043.1 mouse_genomes_project X 113089466 113111820 - MGP_CASTEiJ_P0097581 Nxf2 protein_coding protein_coding MGP_CASTEiJ_T0097582.1 MGP_CASTEiJ_G0035043.1 mouse_genomes_project X 113089466 113110961 - MGP_CASTEiJ_P0097582 Nxf2 protein_coding protein_coding MGP_CASTEiJ_T0095721.1 MGP_CASTEiJ_G0034511.1 mouse_genomes_project X 2446593 2458133 + MGP_CASTEiJ_P0095721 Slc35a2 protein_coding protein_coding MGP_CASTEiJ_T0095722.1 MGP_CASTEiJ_G0034511.1 mouse_genomes_project X 2446796 2458105 + MGP_CASTEiJ_P0095722 Slc35a2 protein_coding protein_coding MGP_CASTEiJ_T0095723.1 MGP_CASTEiJ_G0034511.1 mouse_genomes_project X 2446874 2457668 + MGP_CASTEiJ_P0095723 Slc35a2 protein_coding protein_coding MGP_CASTEiJ_T0095724.1 MGP_CASTEiJ_G0034511.1 mouse_genomes_project X 2446929 2458103 + MGP_CASTEiJ_P0095724 Slc35a2 protein_coding protein_coding MGP_CASTEiJ_T0095725.1 MGP_CASTEiJ_G0034511.1 mouse_genomes_project X 2448387 2458101 + MGP_CASTEiJ_P0095725 Slc35a2 protein_coding protein_coding MGP_CASTEiJ_T0095726.1 MGP_CASTEiJ_G0034511.1 mouse_genomes_project X 2456651 2458105 + Slc35a2 protein_coding processed_transcript MGP_CASTEiJ_T0015921.1 MGP_CASTEiJ_G0014084.1 mouse_genomes_project X 83941963 83942573 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010811.1 MGP_CASTEiJ_G0008999.1 mouse_genomes_project X 18316577 18316679 + Gm25299 miRNA miRNA MGP_CASTEiJ_T0010842.1 MGP_CASTEiJ_G0009030.1 mouse_genomes_project X 48417418 48417485 - Mir471 miRNA miRNA MGP_CASTEiJ_T0009131.1 MGP_CASTEiJ_G0007349.1 mouse_genomes_project X 9449360 9481354 + lincRNA lincRNA MGP_CASTEiJ_T0015809.1 MGP_CASTEiJ_G0013972.1 mouse_genomes_project X 61354554 61355397 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096183.1 MGP_CASTEiJ_G0034652.1 mouse_genomes_project X 31164278 31179434 + MGP_CASTEiJ_P0096183 Sash3 protein_coding protein_coding MGP_CASTEiJ_T0015932.1 MGP_CASTEiJ_G0014095.1 mouse_genomes_project X 84687238 84687690 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096003.1 MGP_CASTEiJ_G0034591.1 mouse_genomes_project X 18033349 18150923 + MGP_CASTEiJ_P0096003 protein_coding protein_coding MGP_CASTEiJ_T0096004.1 MGP_CASTEiJ_G0034591.1 mouse_genomes_project X 18033375 18091935 + protein_coding retained_intron MGP_CASTEiJ_T0096005.1 MGP_CASTEiJ_G0034591.1 mouse_genomes_project X 18033394 18150958 + MGP_CASTEiJ_P0096005 protein_coding protein_coding MGP_CASTEiJ_T0096006.1 MGP_CASTEiJ_G0034591.1 mouse_genomes_project X 18033457 18097265 + MGP_CASTEiJ_P0096006 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096007.1 MGP_CASTEiJ_G0034591.1 mouse_genomes_project X 18116491 18121231 + protein_coding retained_intron MGP_CASTEiJ_T0096728.1 MGP_CASTEiJ_G0034801.1 mouse_genomes_project X 55950593 55958177 + MGP_CASTEiJ_P0096728 Atp6ap1 protein_coding protein_coding MGP_CASTEiJ_T0096729.1 MGP_CASTEiJ_G0034801.1 mouse_genomes_project X 55950639 55955830 + MGP_CASTEiJ_P0096729 Atp6ap1 protein_coding protein_coding MGP_CASTEiJ_T0096730.1 MGP_CASTEiJ_G0034801.1 mouse_genomes_project X 55950658 55956886 + MGP_CASTEiJ_P0096730 Atp6ap1 protein_coding protein_coding MGP_CASTEiJ_T0096731.1 MGP_CASTEiJ_G0034801.1 mouse_genomes_project X 55950659 55958145 + MGP_CASTEiJ_P0096731 Atp6ap1 protein_coding protein_coding MGP_CASTEiJ_T0096732.1 MGP_CASTEiJ_G0034801.1 mouse_genomes_project X 55950673 55954814 + Atp6ap1 protein_coding retained_intron MGP_CASTEiJ_T0096733.1 MGP_CASTEiJ_G0034801.1 mouse_genomes_project X 55950729 55956919 + MGP_CASTEiJ_P0096733 Atp6ap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096734.1 MGP_CASTEiJ_G0034801.1 mouse_genomes_project X 55950758 55955970 + MGP_CASTEiJ_P0096734 Atp6ap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096735.1 MGP_CASTEiJ_G0034801.1 mouse_genomes_project X 55955379 55956689 + Atp6ap1 protein_coding processed_transcript MGP_CASTEiJ_T0096736.1 MGP_CASTEiJ_G0034801.1 mouse_genomes_project X 55956008 55957469 + Atp6ap1 protein_coding retained_intron MGP_CASTEiJ_T0096737.1 MGP_CASTEiJ_G0034801.1 mouse_genomes_project X 55956944 55957471 + MGP_CASTEiJ_P0096737 Atp6ap1 protein_coding protein_coding MGP_CASTEiJ_T0016157.1 MGP_CASTEiJ_G0014320.1 mouse_genomes_project X 128543959 128544320 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015684.1 MGP_CASTEiJ_G0013847.1 mouse_genomes_project X 32550661 32550920 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015735.1 MGP_CASTEiJ_G0013898.1 mouse_genomes_project X 43878205 43878707 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097029.1 MGP_CASTEiJ_G0034883.1 mouse_genomes_project X 77013894 77038226 - MGP_CASTEiJ_P0097029 Zc4h2 protein_coding protein_coding MGP_CASTEiJ_T0097030.1 MGP_CASTEiJ_G0034883.1 mouse_genomes_project X 77013897 77038201 - MGP_CASTEiJ_P0097030 Zc4h2 protein_coding protein_coding MGP_CASTEiJ_T0097031.1 MGP_CASTEiJ_G0034883.1 mouse_genomes_project X 77013900 77038327 - MGP_CASTEiJ_P0097031 Zc4h2 protein_coding protein_coding MGP_CASTEiJ_T0015564.1 MGP_CASTEiJ_G0013727.1 mouse_genomes_project X 2616026 2616894 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016081.1 MGP_CASTEiJ_G0014244.1 mouse_genomes_project X 115155835 115156253 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010861.1 MGP_CASTEiJ_G0009049.1 mouse_genomes_project X 54498754 54498820 + Mir2137 miRNA miRNA MGP_CASTEiJ_T0100220.1 MGP_CASTEiJ_G0037133.1 mouse_genomes_project X 105524252 105524357 + Gm22139 snRNA snRNA MGP_CASTEiJ_T0098104.1 MGP_CASTEiJ_G0035188.1 mouse_genomes_project X 137740305 137855238 + MGP_CASTEiJ_P0098104 Adgrg2 protein_coding protein_coding MGP_CASTEiJ_T0098105.1 MGP_CASTEiJ_G0035188.1 mouse_genomes_project X 137740339 137855238 + MGP_CASTEiJ_P0098105 Adgrg2 protein_coding protein_coding MGP_CASTEiJ_T0098106.1 MGP_CASTEiJ_G0035188.1 mouse_genomes_project X 137740339 137855238 + MGP_CASTEiJ_P0098106 Adgrg2 protein_coding protein_coding MGP_CASTEiJ_T0098107.1 MGP_CASTEiJ_G0035188.1 mouse_genomes_project X 137740340 137855238 + MGP_CASTEiJ_P0098107 Adgrg2 protein_coding protein_coding MGP_CASTEiJ_T0098108.1 MGP_CASTEiJ_G0035188.1 mouse_genomes_project X 137740340 137855238 + MGP_CASTEiJ_P0098108 Adgrg2 protein_coding protein_coding MGP_CASTEiJ_T0098109.1 MGP_CASTEiJ_G0035188.1 mouse_genomes_project X 137740340 137855238 + MGP_CASTEiJ_P0098109 Adgrg2 protein_coding protein_coding MGP_CASTEiJ_T0098110.1 MGP_CASTEiJ_G0035188.1 mouse_genomes_project X 137740343 137818621 + Adgrg2 protein_coding retained_intron MGP_CASTEiJ_T0098111.1 MGP_CASTEiJ_G0035188.1 mouse_genomes_project X 137740343 137827425 + MGP_CASTEiJ_P0098111 Adgrg2 protein_coding protein_coding MGP_CASTEiJ_T0098112.1 MGP_CASTEiJ_G0035188.1 mouse_genomes_project X 137783393 137853906 + MGP_CASTEiJ_P0098112 Adgrg2 protein_coding protein_coding MGP_CASTEiJ_T0097618.1 MGP_CASTEiJ_G0035059.1 mouse_genomes_project X 114305520 114307097 + MGP_CASTEiJ_P0097618 protein_coding protein_coding MGP_CASTEiJ_T0096419.1 MGP_CASTEiJ_G0034739.1 mouse_genomes_project X 50907568 51411243 + MGP_CASTEiJ_P0096419 Aff2 protein_coding protein_coding MGP_CASTEiJ_T0096420.1 MGP_CASTEiJ_G0034739.1 mouse_genomes_project X 50907779 51088259 + Aff2 protein_coding processed_transcript MGP_CASTEiJ_T0096421.1 MGP_CASTEiJ_G0034739.1 mouse_genomes_project X 50907974 51321027 + Aff2 protein_coding processed_transcript MGP_CASTEiJ_T0096422.1 MGP_CASTEiJ_G0034739.1 mouse_genomes_project X 51399874 51409986 + Aff2 protein_coding retained_intron MGP_CASTEiJ_T0016009.1 MGP_CASTEiJ_G0014172.1 mouse_genomes_project X 98336679 98337772 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016167.1 MGP_CASTEiJ_G0014330.1 mouse_genomes_project X 131033193 131033964 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015953.1 MGP_CASTEiJ_G0014116.1 mouse_genomes_project X 87059216 87060056 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011429.1 MGP_CASTEiJ_G0009617.1 mouse_genomes_project X 64140308 64140411 - Gm23671 misc_RNA misc_RNA MGP_CASTEiJ_T0101449.1 MGP_CASTEiJ_G0038362.1 mouse_genomes_project X 86052718 86052825 + Gm22430 snoRNA snoRNA MGP_CASTEiJ_T0100199.1 MGP_CASTEiJ_G0037112.1 mouse_genomes_project X 56663364 56663471 - Gm25629 snRNA snRNA MGP_CASTEiJ_T0098033.1 MGP_CASTEiJ_G0035172.1 mouse_genomes_project X 133012517 133225709 + protein_coding processed_transcript MGP_CASTEiJ_T0095769.1 MGP_CASTEiJ_G0034524.1 mouse_genomes_project X 2729569 2733486 - Rbm3 protein_coding processed_transcript MGP_CASTEiJ_T0095770.1 MGP_CASTEiJ_G0034524.1 mouse_genomes_project X 2729572 2736512 - MGP_CASTEiJ_P0095770 Rbm3 protein_coding protein_coding MGP_CASTEiJ_T0095771.1 MGP_CASTEiJ_G0034524.1 mouse_genomes_project X 2731370 2736494 - MGP_CASTEiJ_P0095771 Rbm3 protein_coding protein_coding MGP_CASTEiJ_T0095772.1 MGP_CASTEiJ_G0034524.1 mouse_genomes_project X 2732960 2736690 - MGP_CASTEiJ_P0095772 Rbm3 protein_coding protein_coding MGP_CASTEiJ_T0095773.1 MGP_CASTEiJ_G0034524.1 mouse_genomes_project X 2732962 2736538 - MGP_CASTEiJ_P0095773 Rbm3 protein_coding protein_coding MGP_CASTEiJ_T0095774.1 MGP_CASTEiJ_G0034524.1 mouse_genomes_project X 2732969 2736511 - MGP_CASTEiJ_P0095774 Rbm3 protein_coding protein_coding MGP_CASTEiJ_T0095775.1 MGP_CASTEiJ_G0034524.1 mouse_genomes_project X 2732969 2736588 - MGP_CASTEiJ_P0095775 Rbm3 protein_coding protein_coding MGP_CASTEiJ_T0095776.1 MGP_CASTEiJ_G0034524.1 mouse_genomes_project X 2733079 2736511 - MGP_CASTEiJ_P0095776 Rbm3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095777.1 MGP_CASTEiJ_G0034524.1 mouse_genomes_project X 2733628 2736512 - MGP_CASTEiJ_P0095777 Rbm3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095778.1 MGP_CASTEiJ_G0034524.1 mouse_genomes_project X 2733857 2736537 - Rbm3 protein_coding retained_intron MGP_CASTEiJ_T0095779.1 MGP_CASTEiJ_G0034524.1 mouse_genomes_project X 2735290 2736574 - Rbm3 protein_coding retained_intron MGP_CASTEiJ_T0097216.1 MGP_CASTEiJ_G0034927.1 mouse_genomes_project X 82759233 82830771 + MGP_CASTEiJ_P0097216 Taf1 protein_coding protein_coding MGP_CASTEiJ_T0097217.1 MGP_CASTEiJ_G0034927.1 mouse_genomes_project X 82759240 82831498 + MGP_CASTEiJ_P0097217 Taf1 protein_coding protein_coding MGP_CASTEiJ_T0097218.1 MGP_CASTEiJ_G0034927.1 mouse_genomes_project X 82759258 82830771 + MGP_CASTEiJ_P0097218 Taf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097219.1 MGP_CASTEiJ_G0034927.1 mouse_genomes_project X 82759258 82775703 + MGP_CASTEiJ_P0097219 Taf1 protein_coding protein_coding MGP_CASTEiJ_T0097220.1 MGP_CASTEiJ_G0034927.1 mouse_genomes_project X 82782817 82830771 + Taf1 protein_coding retained_intron MGP_CASTEiJ_T0097221.1 MGP_CASTEiJ_G0034927.1 mouse_genomes_project X 82820285 82830308 + Taf1 protein_coding processed_transcript MGP_CASTEiJ_T0097693.1 MGP_CASTEiJ_G0035089.1 mouse_genomes_project X 117527985 117553630 + MGP_CASTEiJ_P0097693 Mum1l1 protein_coding protein_coding MGP_CASTEiJ_T0097694.1 MGP_CASTEiJ_G0035089.1 mouse_genomes_project X 117527985 117556988 + MGP_CASTEiJ_P0097694 Mum1l1 protein_coding protein_coding MGP_CASTEiJ_T0097695.1 MGP_CASTEiJ_G0035089.1 mouse_genomes_project X 117527987 117556990 + MGP_CASTEiJ_P0097695 Mum1l1 protein_coding protein_coding MGP_CASTEiJ_T0097696.1 MGP_CASTEiJ_G0035089.1 mouse_genomes_project X 117528051 117531227 + Mum1l1 protein_coding retained_intron MGP_CASTEiJ_T0097697.1 MGP_CASTEiJ_G0035089.1 mouse_genomes_project X 117535103 117553457 + MGP_CASTEiJ_P0097697 Mum1l1 protein_coding protein_coding MGP_CASTEiJ_T0097698.1 MGP_CASTEiJ_G0035089.1 mouse_genomes_project X 117535103 117556990 + MGP_CASTEiJ_P0097698 Mum1l1 protein_coding protein_coding MGP_CASTEiJ_T0097699.1 MGP_CASTEiJ_G0035089.1 mouse_genomes_project X 117535103 117556990 + MGP_CASTEiJ_P0097699 Mum1l1 protein_coding protein_coding MGP_CASTEiJ_T0097700.1 MGP_CASTEiJ_G0035089.1 mouse_genomes_project X 117535103 117553696 + MGP_CASTEiJ_P0097700 Mum1l1 protein_coding protein_coding MGP_CASTEiJ_T0015981.1 MGP_CASTEiJ_G0014144.1 mouse_genomes_project X 93560908 93564779 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095656.1 MGP_CASTEiJ_G0034502.1 mouse_genomes_project X 2245141 2262565 + MGP_CASTEiJ_P0095656 Gpkow protein_coding protein_coding MGP_CASTEiJ_T0095657.1 MGP_CASTEiJ_G0034502.1 mouse_genomes_project X 2251511 2260339 + MGP_CASTEiJ_P0095657 Gpkow protein_coding protein_coding MGP_CASTEiJ_T0010829.1 MGP_CASTEiJ_G0009017.1 mouse_genomes_project X 35991671 35991769 - Mir351 miRNA miRNA MGP_CASTEiJ_T0015854.1 MGP_CASTEiJ_G0014017.1 mouse_genomes_project X 72636081 72638871 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015555.1 MGP_CASTEiJ_G0013718.1 mouse_genomes_project X 523747 523987 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015755.1 MGP_CASTEiJ_G0013918.1 mouse_genomes_project X 48605904 48606435 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097297.1 MGP_CASTEiJ_G0034956.1 mouse_genomes_project X 86261312 86263614 - MGP_CASTEiJ_P0097297 Magee2 protein_coding protein_coding MGP_CASTEiJ_T0016101.1 MGP_CASTEiJ_G0014264.1 mouse_genomes_project X 119007496 119007947 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096328.1 MGP_CASTEiJ_G0034706.1 mouse_genomes_project X 38528726 38556538 - MGP_CASTEiJ_P0096328 Mtap7d3 protein_coding protein_coding MGP_CASTEiJ_T0096329.1 MGP_CASTEiJ_G0034706.1 mouse_genomes_project X 38540588 38556526 - MGP_CASTEiJ_P0096329 Mtap7d3 protein_coding protein_coding MGP_CASTEiJ_T0010821.1 MGP_CASTEiJ_G0009009.1 mouse_genomes_project X 35658354 35658438 - Mir19b-2 miRNA miRNA MGP_CASTEiJ_T0015591.1 MGP_CASTEiJ_G0013754.1 mouse_genomes_project X 8972665 8973531 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095616.1 MGP_CASTEiJ_G0034493.1 mouse_genomes_project X 2102932 2121454 - MGP_CASTEiJ_P0095616 Ppp1r3f protein_coding protein_coding MGP_CASTEiJ_T0095617.1 MGP_CASTEiJ_G0034493.1 mouse_genomes_project X 2104599 2121419 - MGP_CASTEiJ_P0095617 Ppp1r3f protein_coding protein_coding MGP_CASTEiJ_T0095618.1 MGP_CASTEiJ_G0034493.1 mouse_genomes_project X 2104869 2111420 - Ppp1r3f protein_coding processed_transcript MGP_CASTEiJ_T0095619.1 MGP_CASTEiJ_G0034493.1 mouse_genomes_project X 2105897 2120014 - MGP_CASTEiJ_P0095619 Ppp1r3f protein_coding protein_coding MGP_CASTEiJ_T0095620.1 MGP_CASTEiJ_G0034493.1 mouse_genomes_project X 2107908 2111451 - Ppp1r3f protein_coding processed_transcript MGP_CASTEiJ_T0005430.1 MGP_CASTEiJ_G0004585.1 mouse_genomes_project X 5300801 5302040 - Gm14493 antisense antisense MGP_CASTEiJ_T0096397.1 MGP_CASTEiJ_G0034731.1 mouse_genomes_project X 46738424 46739795 + MGP_CASTEiJ_P0096397 Ctag2 protein_coding protein_coding MGP_CASTEiJ_T0098044.1 MGP_CASTEiJ_G0035176.1 mouse_genomes_project X 134910262 134913128 - MGP_CASTEiJ_P0098044 Yy2 protein_coding protein_coding MGP_CASTEiJ_T0016155.1 MGP_CASTEiJ_G0014318.1 mouse_genomes_project X 128297448 128298981 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098234.1 MGP_CASTEiJ_G0035220.1 mouse_genomes_project X 143485193 143504596 + MGP_CASTEiJ_P0098234 Gemin8 protein_coding protein_coding MGP_CASTEiJ_T0098235.1 MGP_CASTEiJ_G0035220.1 mouse_genomes_project X 143485193 143505303 + MGP_CASTEiJ_P0098235 Gemin8 protein_coding protein_coding MGP_CASTEiJ_T0098236.1 MGP_CASTEiJ_G0035220.1 mouse_genomes_project X 143485231 143504612 + MGP_CASTEiJ_P0098236 Gemin8 protein_coding protein_coding MGP_CASTEiJ_T0098237.1 MGP_CASTEiJ_G0035220.1 mouse_genomes_project X 143485234 143505301 + MGP_CASTEiJ_P0098237 Gemin8 protein_coding protein_coding MGP_CASTEiJ_T0098238.1 MGP_CASTEiJ_G0035220.1 mouse_genomes_project X 143492904 143495458 + MGP_CASTEiJ_P0098238 Gemin8 protein_coding protein_coding MGP_CASTEiJ_T0098239.1 MGP_CASTEiJ_G0035220.1 mouse_genomes_project X 143492921 143504026 + MGP_CASTEiJ_P0098239 Gemin8 protein_coding protein_coding MGP_CASTEiJ_T0015835.1 MGP_CASTEiJ_G0013998.1 mouse_genomes_project X 69167807 69168833 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015827.1 MGP_CASTEiJ_G0013990.1 mouse_genomes_project X 67139485 67139785 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098128.1 MGP_CASTEiJ_G0035192.1 mouse_genomes_project X 138110859 138278974 - MGP_CASTEiJ_P0098128 Cdkl5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098129.1 MGP_CASTEiJ_G0035192.1 mouse_genomes_project X 138110859 138278941 - MGP_CASTEiJ_P0098129 Cdkl5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098130.1 MGP_CASTEiJ_G0035192.1 mouse_genomes_project X 138128071 138346195 - MGP_CASTEiJ_P0098130 Cdkl5 protein_coding protein_coding MGP_CASTEiJ_T0098132.1 MGP_CASTEiJ_G0035192.1 mouse_genomes_project X 138146012 138164057 - Cdkl5 protein_coding processed_transcript MGP_CASTEiJ_T0098133.1 MGP_CASTEiJ_G0035192.1 mouse_genomes_project X 138148252 138278941 - MGP_CASTEiJ_P0098133 Cdkl5 protein_coding protein_coding MGP_CASTEiJ_T0098134.1 MGP_CASTEiJ_G0035192.1 mouse_genomes_project X 138193730 138197249 - Cdkl5 protein_coding retained_intron MGP_CASTEiJ_T0095621.1 MGP_CASTEiJ_G0034494.1 mouse_genomes_project X 2126853 2142312 + MGP_CASTEiJ_P0095621 Foxp3 protein_coding protein_coding MGP_CASTEiJ_T0095622.1 MGP_CASTEiJ_G0034494.1 mouse_genomes_project X 2126870 2142303 + MGP_CASTEiJ_P0095622 Foxp3 protein_coding protein_coding MGP_CASTEiJ_T0095623.1 MGP_CASTEiJ_G0034494.1 mouse_genomes_project X 2127659 2142303 + MGP_CASTEiJ_P0095623 Foxp3 protein_coding protein_coding MGP_CASTEiJ_T0095624.1 MGP_CASTEiJ_G0034494.1 mouse_genomes_project X 2133330 2142312 + MGP_CASTEiJ_P0095624 Foxp3 protein_coding protein_coding MGP_CASTEiJ_T0095682.1 MGP_CASTEiJ_G0034506.1 mouse_genomes_project X 2319394 2322898 + Tfe3 protein_coding retained_intron MGP_CASTEiJ_T0095683.1 MGP_CASTEiJ_G0034506.1 mouse_genomes_project X 2319420 2323593 + Tfe3 protein_coding processed_transcript MGP_CASTEiJ_T0095684.1 MGP_CASTEiJ_G0034506.1 mouse_genomes_project X 2319492 2331946 + MGP_CASTEiJ_P0095684 Tfe3 protein_coding protein_coding MGP_CASTEiJ_T0095685.1 MGP_CASTEiJ_G0034506.1 mouse_genomes_project X 2319498 2331943 + MGP_CASTEiJ_P0095685 Tfe3 protein_coding protein_coding MGP_CASTEiJ_T0095686.1 MGP_CASTEiJ_G0034506.1 mouse_genomes_project X 2319510 2331945 + MGP_CASTEiJ_P0095686 Tfe3 protein_coding protein_coding MGP_CASTEiJ_T0095687.1 MGP_CASTEiJ_G0034506.1 mouse_genomes_project X 2319529 2331943 + MGP_CASTEiJ_P0095687 Tfe3 protein_coding protein_coding MGP_CASTEiJ_T0095688.1 MGP_CASTEiJ_G0034506.1 mouse_genomes_project X 2319531 2331945 + Tfe3 protein_coding retained_intron MGP_CASTEiJ_T0095689.1 MGP_CASTEiJ_G0034506.1 mouse_genomes_project X 2319601 2331946 + MGP_CASTEiJ_P0095689 Tfe3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095690.1 MGP_CASTEiJ_G0034506.1 mouse_genomes_project X 2320777 2323618 + MGP_CASTEiJ_P0095690 Tfe3 protein_coding protein_coding MGP_CASTEiJ_T0095691.1 MGP_CASTEiJ_G0034506.1 mouse_genomes_project X 2320793 2331945 + MGP_CASTEiJ_P0095691 Tfe3 protein_coding protein_coding MGP_CASTEiJ_T0095692.1 MGP_CASTEiJ_G0034506.1 mouse_genomes_project X 2320875 2331941 + MGP_CASTEiJ_P0095692 Tfe3 protein_coding protein_coding MGP_CASTEiJ_T0095693.1 MGP_CASTEiJ_G0034506.1 mouse_genomes_project X 2320921 2331943 + MGP_CASTEiJ_P0095693 Tfe3 protein_coding protein_coding MGP_CASTEiJ_T0095694.1 MGP_CASTEiJ_G0034506.1 mouse_genomes_project X 2321484 2331941 + Tfe3 protein_coding retained_intron MGP_CASTEiJ_T0095695.1 MGP_CASTEiJ_G0034506.1 mouse_genomes_project X 2326200 2328093 + Tfe3 protein_coding retained_intron MGP_CASTEiJ_T0015956.1 MGP_CASTEiJ_G0014119.1 mouse_genomes_project X 88044011 88044304 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016114.1 MGP_CASTEiJ_G0014277.1 mouse_genomes_project X 120308990 120311136 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010825.1 MGP_CASTEiJ_G0009013.1 mouse_genomes_project X 35986399 35986481 - Mir450b miRNA miRNA MGP_CASTEiJ_T0009135.1 MGP_CASTEiJ_G0007352.1 mouse_genomes_project X 15634299 15649805 - 4930453H23Rik lincRNA lincRNA MGP_CASTEiJ_T0009136.1 MGP_CASTEiJ_G0007352.1 mouse_genomes_project X 15634776 15635034 - 4930453H23Rik lincRNA lincRNA MGP_CASTEiJ_T0009137.1 MGP_CASTEiJ_G0007352.1 mouse_genomes_project X 15646546 15649704 - 4930453H23Rik lincRNA lincRNA MGP_CASTEiJ_T0011426.1 MGP_CASTEiJ_G0009614.1 mouse_genomes_project X 48101752 48102017 + Gm23028 misc_RNA misc_RNA MGP_CASTEiJ_T0010895.1 MGP_CASTEiJ_G0009083.1 mouse_genomes_project X 125255923 125256028 + Gm22650 miRNA miRNA MGP_CASTEiJ_T0015556.1 MGP_CASTEiJ_G0013719.1 mouse_genomes_project X 1662430 1662861 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015619.1 MGP_CASTEiJ_G0013782.1 mouse_genomes_project X 15416908 15417712 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100215.1 MGP_CASTEiJ_G0037128.1 mouse_genomes_project X 90367972 90368079 - Gm25797 snRNA snRNA MGP_CASTEiJ_T0101439.1 MGP_CASTEiJ_G0038352.1 mouse_genomes_project X 57547308 57547435 + Gm23320 snoRNA snoRNA MGP_CASTEiJ_T0101425.1 MGP_CASTEiJ_G0038338.1 mouse_genomes_project X 15920897 15921028 - Gm22592 snoRNA snoRNA MGP_CASTEiJ_T0097161.1 MGP_CASTEiJ_G0034917.1 mouse_genomes_project X 82464643 82470972 + MGP_CASTEiJ_P0097161 Foxo4 protein_coding protein_coding MGP_CASTEiJ_T0097162.1 MGP_CASTEiJ_G0034917.1 mouse_genomes_project X 82464682 82466551 + Foxo4 protein_coding processed_transcript MGP_CASTEiJ_T0097163.1 MGP_CASTEiJ_G0034917.1 mouse_genomes_project X 82464936 82469328 + MGP_CASTEiJ_P0097163 Foxo4 protein_coding protein_coding MGP_CASTEiJ_T0100239.1 MGP_CASTEiJ_G0037152.1 mouse_genomes_project X 140767782 140767902 - Gm26007 snRNA snRNA MGP_CASTEiJ_T0002405.1 MGP_CASTEiJ_G0002322.1 mouse_genomes_project X 85172109 85174123 - TEC TEC MGP_CASTEiJ_T0100241.1 MGP_CASTEiJ_G0037154.1 mouse_genomes_project X 143075274 143075381 - Gm22062 snRNA snRNA MGP_CASTEiJ_T0016187.1 MGP_CASTEiJ_G0014350.1 mouse_genomes_project X 134952401 134952536 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096501.1 MGP_CASTEiJ_G0034766.1 mouse_genomes_project X 54716334 54731307 + MGP_CASTEiJ_P0096501 protein_coding protein_coding MGP_CASTEiJ_T0098217.1 MGP_CASTEiJ_G0035215.1 mouse_genomes_project X 141850175 141872257 + MGP_CASTEiJ_P0098217 Asb11 protein_coding protein_coding MGP_CASTEiJ_T0098218.1 MGP_CASTEiJ_G0035215.1 mouse_genomes_project X 141850191 141860186 + Asb11 protein_coding retained_intron MGP_CASTEiJ_T0098219.1 MGP_CASTEiJ_G0035215.1 mouse_genomes_project X 141850233 141871835 + MGP_CASTEiJ_P0098219 Asb11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0010822.1 MGP_CASTEiJ_G0009010.1 mouse_genomes_project X 35658484 35658564 - Mir20b miRNA miRNA MGP_CASTEiJ_T0016141.1 MGP_CASTEiJ_G0014304.1 mouse_genomes_project X 124001122 124001580 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016196.1 MGP_CASTEiJ_G0014359.1 mouse_genomes_project X 136172481 136173366 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097916.1 MGP_CASTEiJ_G0035144.1 mouse_genomes_project X 128899173 129004989 + MGP_CASTEiJ_P0097916 Phf8 protein_coding protein_coding MGP_CASTEiJ_T0097917.1 MGP_CASTEiJ_G0035144.1 mouse_genomes_project X 128899173 128949671 + MGP_CASTEiJ_P0097917 Phf8 protein_coding protein_coding MGP_CASTEiJ_T0097918.1 MGP_CASTEiJ_G0035144.1 mouse_genomes_project X 128899173 128997050 + MGP_CASTEiJ_P0097918 Phf8 protein_coding protein_coding MGP_CASTEiJ_T0097919.1 MGP_CASTEiJ_G0035144.1 mouse_genomes_project X 128899670 128971810 + MGP_CASTEiJ_P0097919 Phf8 protein_coding protein_coding MGP_CASTEiJ_T0097920.1 MGP_CASTEiJ_G0035144.1 mouse_genomes_project X 128899682 128997050 + MGP_CASTEiJ_P0097920 Phf8 protein_coding protein_coding MGP_CASTEiJ_T0097921.1 MGP_CASTEiJ_G0035144.1 mouse_genomes_project X 128899688 128961275 + MGP_CASTEiJ_P0097921 Phf8 protein_coding protein_coding MGP_CASTEiJ_T0097922.1 MGP_CASTEiJ_G0035144.1 mouse_genomes_project X 128899688 129004991 + MGP_CASTEiJ_P0097922 Phf8 protein_coding protein_coding MGP_CASTEiJ_T0097923.1 MGP_CASTEiJ_G0035144.1 mouse_genomes_project X 128900860 128928892 + MGP_CASTEiJ_P0097923 Phf8 protein_coding protein_coding MGP_CASTEiJ_T0097924.1 MGP_CASTEiJ_G0035144.1 mouse_genomes_project X 128932413 128934634 + Phf8 protein_coding retained_intron MGP_CASTEiJ_T0097925.1 MGP_CASTEiJ_G0035144.1 mouse_genomes_project X 128944871 128954736 + MGP_CASTEiJ_P0097925 Phf8 protein_coding protein_coding MGP_CASTEiJ_T0097926.1 MGP_CASTEiJ_G0035144.1 mouse_genomes_project X 129000948 129004991 + Phf8 protein_coding retained_intron MGP_CASTEiJ_T0005470.1 MGP_CASTEiJ_G0004617.1 mouse_genomes_project X 137884082 137889142 - Gm15243 antisense antisense MGP_CASTEiJ_T0098706.1 MGP_CASTEiJ_G0035637.1 mouse_genomes_project X 141543052 141543173 + n-R5s18 rRNA rRNA MGP_CASTEiJ_T0015718.1 MGP_CASTEiJ_G0013881.1 mouse_genomes_project X 41732902 41733498 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100224.1 MGP_CASTEiJ_G0037137.1 mouse_genomes_project X 116565102 116565209 - Gm22057 snRNA snRNA MGP_CASTEiJ_T0097456.1 MGP_CASTEiJ_G0035003.1 mouse_genomes_project X 95894982 95895534 + MGP_CASTEiJ_P0097456 Ube2dnl1 protein_coding protein_coding MGP_CASTEiJ_T0096102.1 MGP_CASTEiJ_G0034632.1 mouse_genomes_project X 21968590 21972917 - MGP_CASTEiJ_P0096102 C1galt1c1 protein_coding protein_coding MGP_CASTEiJ_T0098262.1 MGP_CASTEiJ_G0035227.1 mouse_genomes_project X 144569963 144572186 - MGP_CASTEiJ_P0098262 Tmsb4x protein_coding protein_coding MGP_CASTEiJ_T0098263.1 MGP_CASTEiJ_G0035227.1 mouse_genomes_project X 144569965 144572020 - MGP_CASTEiJ_P0098263 Tmsb4x protein_coding protein_coding MGP_CASTEiJ_T0098264.1 MGP_CASTEiJ_G0035227.1 mouse_genomes_project X 144570162 144571696 - MGP_CASTEiJ_P0098264 Tmsb4x protein_coding protein_coding MGP_CASTEiJ_T0015778.1 MGP_CASTEiJ_G0013941.1 mouse_genomes_project X 54870884 54871317 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100207.1 MGP_CASTEiJ_G0037120.1 mouse_genomes_project X 83161134 83161229 - Gm25828 snRNA snRNA MGP_CASTEiJ_T0015688.1 MGP_CASTEiJ_G0013851.1 mouse_genomes_project X 33927487 33928344 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097281.1 MGP_CASTEiJ_G0034947.1 mouse_genomes_project X 84793244 84805747 + MGP_CASTEiJ_P0097281 Tsx protein_coding protein_coding MGP_CASTEiJ_T0096390.1 MGP_CASTEiJ_G0034727.1 mouse_genomes_project X 44148261 44149083 + MGP_CASTEiJ_P0096390 4931400O07Rik protein_coding protein_coding MGP_CASTEiJ_T0102623.1 MGP_CASTEiJ_G0039347.1 mouse_genomes_project X 37543877 37551838 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0096971.1 MGP_CASTEiJ_G0034870.1 mouse_genomes_project X 75374868 75382406 + MGP_CASTEiJ_P0096971 AU015836 protein_coding protein_coding MGP_CASTEiJ_T0096972.1 MGP_CASTEiJ_G0034870.1 mouse_genomes_project X 75374883 75382406 + MGP_CASTEiJ_P0096972 AU015836 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096973.1 MGP_CASTEiJ_G0034870.1 mouse_genomes_project X 75374891 75375868 + MGP_CASTEiJ_P0096973 AU015836 protein_coding protein_coding MGP_CASTEiJ_T0096974.1 MGP_CASTEiJ_G0034870.1 mouse_genomes_project X 75375851 75377871 + AU015836 protein_coding processed_transcript MGP_CASTEiJ_T0096975.1 MGP_CASTEiJ_G0034870.1 mouse_genomes_project X 75376007 75382007 + MGP_CASTEiJ_P0096975 AU015836 protein_coding protein_coding MGP_CASTEiJ_T0009197.1 MGP_CASTEiJ_G0007393.1 mouse_genomes_project X 129698116 129726305 - Kantr lincRNA lincRNA MGP_CASTEiJ_T0009198.1 MGP_CASTEiJ_G0007393.1 mouse_genomes_project X 129698268 129726305 - Kantr lincRNA lincRNA MGP_CASTEiJ_T0009199.1 MGP_CASTEiJ_G0007393.1 mouse_genomes_project X 129698268 129726305 - Kantr lincRNA lincRNA MGP_CASTEiJ_T0009200.1 MGP_CASTEiJ_G0007393.1 mouse_genomes_project X 129698345 129726273 - Kantr lincRNA lincRNA MGP_CASTEiJ_T0009201.1 MGP_CASTEiJ_G0007393.1 mouse_genomes_project X 129714144 129716848 - Kantr lincRNA lincRNA MGP_CASTEiJ_T0009202.1 MGP_CASTEiJ_G0007393.1 mouse_genomes_project X 129714240 129726280 - Kantr lincRNA lincRNA MGP_CASTEiJ_T0009203.1 MGP_CASTEiJ_G0007393.1 mouse_genomes_project X 129718631 129726280 - Kantr lincRNA lincRNA MGP_CASTEiJ_T0098180.1 MGP_CASTEiJ_G0035204.1 mouse_genomes_project X 141152267 141153459 - MGP_CASTEiJ_P0098180 Rnf138rt1 protein_coding protein_coding MGP_CASTEiJ_T0015658.1 MGP_CASTEiJ_G0013821.1 mouse_genomes_project X 25133500 25134073 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101698.1 MGP_CASTEiJ_G0038520.1 mouse_genomes_project X 115047131 115047453 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0100202.1 MGP_CASTEiJ_G0037115.1 mouse_genomes_project X 63495106 63495206 + Gm22686 snRNA snRNA MGP_CASTEiJ_T0002404.1 MGP_CASTEiJ_G0002321.1 mouse_genomes_project X 84967138 84971811 - TEC TEC MGP_CASTEiJ_T0015865.1 MGP_CASTEiJ_G0014028.1 mouse_genomes_project X 73890199 73890375 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095914.1 MGP_CASTEiJ_G0034567.1 mouse_genomes_project X 14509074 14699619 - MGP_CASTEiJ_P0095914 Slc9a7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095915.1 MGP_CASTEiJ_G0034567.1 mouse_genomes_project X 14513288 14699742 - MGP_CASTEiJ_P0095915 Slc9a7 protein_coding protein_coding MGP_CASTEiJ_T0095916.1 MGP_CASTEiJ_G0034567.1 mouse_genomes_project X 14524776 14699721 - Slc9a7 protein_coding retained_intron MGP_CASTEiJ_T0095917.1 MGP_CASTEiJ_G0034567.1 mouse_genomes_project X 14558221 14699705 - MGP_CASTEiJ_P0095917 Slc9a7 protein_coding protein_coding MGP_CASTEiJ_T0095918.1 MGP_CASTEiJ_G0034567.1 mouse_genomes_project X 14568422 14699742 - Slc9a7 protein_coding retained_intron MGP_CASTEiJ_T0095919.1 MGP_CASTEiJ_G0034567.1 mouse_genomes_project X 14580083 14699564 - MGP_CASTEiJ_P0095919 Slc9a7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0098011.1 MGP_CASTEiJ_G0035164.1 mouse_genomes_project X 131198698 131199984 + MGP_CASTEiJ_P0098011 Spin2c protein_coding protein_coding MGP_CASTEiJ_T0098012.1 MGP_CASTEiJ_G0035164.1 mouse_genomes_project X 131198714 131199997 + MGP_CASTEiJ_P0098012 Spin2c protein_coding protein_coding MGP_CASTEiJ_T0098013.1 MGP_CASTEiJ_G0035164.1 mouse_genomes_project X 131198766 131200721 + MGP_CASTEiJ_P0098013 Spin2c protein_coding protein_coding MGP_CASTEiJ_T0015597.1 MGP_CASTEiJ_G0013760.1 mouse_genomes_project X 10148987 10149323 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015618.1 MGP_CASTEiJ_G0013781.1 mouse_genomes_project X 15328974 15329173 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015848.1 MGP_CASTEiJ_G0014011.1 mouse_genomes_project X 70797520 70798028 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016098.1 MGP_CASTEiJ_G0014261.1 mouse_genomes_project X 118242949 118244434 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015717.1 MGP_CASTEiJ_G0013880.1 mouse_genomes_project X 41727552 41728671 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015947.1 MGP_CASTEiJ_G0014110.1 mouse_genomes_project X 85784288 85784753 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010892.1 MGP_CASTEiJ_G0009080.1 mouse_genomes_project X 121075515 121075613 + Mir652 miRNA miRNA MGP_CASTEiJ_T0101699.1 MGP_CASTEiJ_G0038521.1 mouse_genomes_project X 115249323 115249619 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0097691.1 MGP_CASTEiJ_G0035087.1 mouse_genomes_project X 117403154 117410186 + MGP_CASTEiJ_P0097691 4930513O06Rik protein_coding protein_coding MGP_CASTEiJ_T0096008.1 MGP_CASTEiJ_G0034592.1 mouse_genomes_project X 18222200 18246731 + MGP_CASTEiJ_P0096008 Gm4907 protein_coding protein_coding MGP_CASTEiJ_T0096009.1 MGP_CASTEiJ_G0034592.1 mouse_genomes_project X 18232042 18246621 + MGP_CASTEiJ_P0096009 Gm4907 protein_coding protein_coding MGP_CASTEiJ_T0098278.1 MGP_CASTEiJ_G0035231.1 mouse_genomes_project X 144832811 145950076 - MGP_CASTEiJ_P0098278 Frmpd4 protein_coding protein_coding MGP_CASTEiJ_T0098279.1 MGP_CASTEiJ_G0035231.1 mouse_genomes_project X 144832811 145515198 - MGP_CASTEiJ_P0098279 Frmpd4 protein_coding protein_coding MGP_CASTEiJ_T0098280.1 MGP_CASTEiJ_G0035231.1 mouse_genomes_project X 144832815 145281640 - MGP_CASTEiJ_P0098280 Frmpd4 protein_coding protein_coding MGP_CASTEiJ_T0098281.1 MGP_CASTEiJ_G0035231.1 mouse_genomes_project X 144836867 145101565 - MGP_CASTEiJ_P0098281 Frmpd4 protein_coding protein_coding MGP_CASTEiJ_T0098282.1 MGP_CASTEiJ_G0035231.1 mouse_genomes_project X 144839777 144975996 - MGP_CASTEiJ_P0098282 Frmpd4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0102648.1 MGP_CASTEiJ_G0039372.1 mouse_genomes_project X 87741887 87781924 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0095996.1 MGP_CASTEiJ_G0034589.1 mouse_genomes_project X 16180640 16182303 - MGP_CASTEiJ_P0095996 Gm28269 protein_coding protein_coding MGP_CASTEiJ_T0015940.1 MGP_CASTEiJ_G0014103.1 mouse_genomes_project X 85036809 85037992 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016093.1 MGP_CASTEiJ_G0014256.1 mouse_genomes_project X 117006887 117009543 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010830.1 MGP_CASTEiJ_G0009018.1 mouse_genomes_project X 35992398 35992469 - Mir503 miRNA miRNA MGP_CASTEiJ_T0010890.1 MGP_CASTEiJ_G0009078.1 mouse_genomes_project X 114471033 114471149 + Mir6383 miRNA miRNA MGP_CASTEiJ_T0016054.1 MGP_CASTEiJ_G0014217.1 mouse_genomes_project X 110326504 110327406 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016186.1 MGP_CASTEiJ_G0014349.1 mouse_genomes_project X 134951875 134952007 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102621.1 MGP_CASTEiJ_G0039345.1 mouse_genomes_project X 36662391 37928724 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101454.1 MGP_CASTEiJ_G0038367.1 mouse_genomes_project X 102578642 102578778 + Gm23277 snoRNA snoRNA MGP_CASTEiJ_T0101464.1 MGP_CASTEiJ_G0038377.1 mouse_genomes_project X 120817762 120817873 - Gm25915 snoRNA snoRNA MGP_CASTEiJ_T0096887.1 MGP_CASTEiJ_G0034840.1 mouse_genomes_project X 59585886 59676911 + MGP_CASTEiJ_P0096887 Gm5938 protein_coding protein_coding MGP_CASTEiJ_T0097069.1 MGP_CASTEiJ_G0034896.1 mouse_genomes_project X 79723731 80066204 - MGP_CASTEiJ_P0097069 Ophn1 protein_coding protein_coding MGP_CASTEiJ_T0097070.1 MGP_CASTEiJ_G0034896.1 mouse_genomes_project X 79731552 80066000 - MGP_CASTEiJ_P0097070 Ophn1 protein_coding protein_coding MGP_CASTEiJ_T0097071.1 MGP_CASTEiJ_G0034896.1 mouse_genomes_project X 79731558 79758275 - MGP_CASTEiJ_P0097071 Ophn1 protein_coding protein_coding MGP_CASTEiJ_T0097072.1 MGP_CASTEiJ_G0034896.1 mouse_genomes_project X 79736852 79758221 - Ophn1 protein_coding processed_transcript MGP_CASTEiJ_T0097073.1 MGP_CASTEiJ_G0034896.1 mouse_genomes_project X 79881135 80066244 - Ophn1 protein_coding retained_intron MGP_CASTEiJ_T0097074.1 MGP_CASTEiJ_G0034896.1 mouse_genomes_project X 79881362 80066204 - Ophn1 protein_coding retained_intron MGP_CASTEiJ_T0097075.1 MGP_CASTEiJ_G0034896.1 mouse_genomes_project X 79901139 80066204 - MGP_CASTEiJ_P0097075 Ophn1 protein_coding protein_coding MGP_CASTEiJ_T0097076.1 MGP_CASTEiJ_G0034896.1 mouse_genomes_project X 79967561 80065828 - Ophn1 protein_coding retained_intron MGP_CASTEiJ_T0097077.1 MGP_CASTEiJ_G0034896.1 mouse_genomes_project X 80047969 80065603 - Ophn1 protein_coding processed_transcript MGP_CASTEiJ_T0097078.1 MGP_CASTEiJ_G0034896.1 mouse_genomes_project X 80062994 80065844 - Ophn1 protein_coding retained_intron MGP_CASTEiJ_T0097540.1 MGP_CASTEiJ_G0035033.1 mouse_genomes_project X 112669462 112674085 - MGP_CASTEiJ_P0097540 protein_coding protein_coding MGP_CASTEiJ_T0096874.1 MGP_CASTEiJ_G0034831.1 mouse_genomes_project X 57960233 57963662 + MGP_CASTEiJ_P0096874 protein_coding protein_coding MGP_CASTEiJ_T0096300.1 MGP_CASTEiJ_G0034696.1 mouse_genomes_project X 36616352 36618699 - MGP_CASTEiJ_P0096300 Zfp36l3 protein_coding protein_coding MGP_CASTEiJ_T0015613.1 MGP_CASTEiJ_G0013776.1 mouse_genomes_project X 14788934 14790007 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096630.1 MGP_CASTEiJ_G0034790.1 mouse_genomes_project X 55551446 55576707 - MGP_CASTEiJ_P0096630 Hcfc1 protein_coding protein_coding MGP_CASTEiJ_T0096631.1 MGP_CASTEiJ_G0034790.1 mouse_genomes_project X 55551449 55559667 - MGP_CASTEiJ_P0096631 Hcfc1 protein_coding protein_coding MGP_CASTEiJ_T0096632.1 MGP_CASTEiJ_G0034790.1 mouse_genomes_project X 55551451 55576701 - MGP_CASTEiJ_P0096632 Hcfc1 protein_coding protein_coding MGP_CASTEiJ_T0096633.1 MGP_CASTEiJ_G0034790.1 mouse_genomes_project X 55553975 55556085 - Hcfc1 protein_coding retained_intron MGP_CASTEiJ_T0096634.1 MGP_CASTEiJ_G0034790.1 mouse_genomes_project X 55555847 55556999 - Hcfc1 protein_coding processed_transcript MGP_CASTEiJ_T0096635.1 MGP_CASTEiJ_G0034790.1 mouse_genomes_project X 55565542 55567852 - Hcfc1 protein_coding processed_transcript MGP_CASTEiJ_T0015994.1 MGP_CASTEiJ_G0014157.1 mouse_genomes_project X 95220081 95221578 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097638.1 MGP_CASTEiJ_G0035069.1 mouse_genomes_project X 114944844 114948354 + MGP_CASTEiJ_P0097638 Tceal1 protein_coding protein_coding MGP_CASTEiJ_T0102635.1 MGP_CASTEiJ_G0039359.1 mouse_genomes_project X 59585938 59597899 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015814.1 MGP_CASTEiJ_G0013977.1 mouse_genomes_project X 62638166 62638892 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010879.1 MGP_CASTEiJ_G0009067.1 mouse_genomes_project X 85521526 85521626 - Mir672 miRNA miRNA MGP_CASTEiJ_T0096524.1 MGP_CASTEiJ_G0034775.1 mouse_genomes_project X 55226759 55230858 + MGP_CASTEiJ_P0096524 Dusp9 protein_coding protein_coding MGP_CASTEiJ_T0097462.1 MGP_CASTEiJ_G0035009.1 mouse_genomes_project X 99348112 99349142 + MGP_CASTEiJ_P0097462 Tgif2lx2 protein_coding protein_coding MGP_CASTEiJ_T0098302.1 MGP_CASTEiJ_G0035236.1 mouse_genomes_project X 147154067 147158461 - MGP_CASTEiJ_P0098302 4933400A11Rik protein_coding protein_coding MGP_CASTEiJ_T0098303.1 MGP_CASTEiJ_G0035236.1 mouse_genomes_project X 147154188 147158504 - MGP_CASTEiJ_P0098303 4933400A11Rik protein_coding protein_coding MGP_CASTEiJ_T0098304.1 MGP_CASTEiJ_G0035236.1 mouse_genomes_project X 147154235 147158426 - MGP_CASTEiJ_P0098304 4933400A11Rik protein_coding protein_coding MGP_CASTEiJ_T0096087.1 MGP_CASTEiJ_G0034629.1 mouse_genomes_project X 21743817 21796847 - MGP_CASTEiJ_P0096087 Lamp2 protein_coding protein_coding MGP_CASTEiJ_T0096088.1 MGP_CASTEiJ_G0034629.1 mouse_genomes_project X 21747559 21796847 - MGP_CASTEiJ_P0096088 Lamp2 protein_coding protein_coding MGP_CASTEiJ_T0096089.1 MGP_CASTEiJ_G0034629.1 mouse_genomes_project X 21760741 21796847 - MGP_CASTEiJ_P0096089 Lamp2 protein_coding protein_coding MGP_CASTEiJ_T0096090.1 MGP_CASTEiJ_G0034629.1 mouse_genomes_project X 21771043 21783777 - Lamp2 protein_coding retained_intron MGP_CASTEiJ_T0096091.1 MGP_CASTEiJ_G0034629.1 mouse_genomes_project X 21793288 21796807 - Lamp2 protein_coding processed_transcript MGP_CASTEiJ_T0097702.1 MGP_CASTEiJ_G0035091.1 mouse_genomes_project X 117811375 117897198 + MGP_CASTEiJ_P0097702 D330045A20Rik protein_coding protein_coding MGP_CASTEiJ_T0097703.1 MGP_CASTEiJ_G0035091.1 mouse_genomes_project X 117811379 117828480 + D330045A20Rik protein_coding processed_transcript MGP_CASTEiJ_T0097704.1 MGP_CASTEiJ_G0035091.1 mouse_genomes_project X 117811379 117897198 + MGP_CASTEiJ_P0097704 D330045A20Rik protein_coding protein_coding MGP_CASTEiJ_T0016140.1 MGP_CASTEiJ_G0014303.1 mouse_genomes_project X 123914072 123915021 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098199.1 MGP_CASTEiJ_G0035210.1 mouse_genomes_project X 141549778 141602828 + MGP_CASTEiJ_P0098199 Ace2 protein_coding protein_coding MGP_CASTEiJ_T0098200.1 MGP_CASTEiJ_G0035210.1 mouse_genomes_project X 141550925 141602828 + MGP_CASTEiJ_P0098200 Ace2 protein_coding protein_coding MGP_CASTEiJ_T0098201.1 MGP_CASTEiJ_G0035210.1 mouse_genomes_project X 141573190 141600221 + MGP_CASTEiJ_P0098201 Ace2 protein_coding protein_coding MGP_CASTEiJ_T0010848.1 MGP_CASTEiJ_G0009036.1 mouse_genomes_project X 48436358 48436435 - Mir871 miRNA miRNA MGP_CASTEiJ_T0097138.1 MGP_CASTEiJ_G0034913.1 mouse_genomes_project X 81961881 82016213 + MGP_CASTEiJ_P0097138 Dlg3 protein_coding protein_coding MGP_CASTEiJ_T0097139.1 MGP_CASTEiJ_G0034913.1 mouse_genomes_project X 81961882 82016215 + MGP_CASTEiJ_P0097139 Dlg3 protein_coding protein_coding MGP_CASTEiJ_T0097140.1 MGP_CASTEiJ_G0034913.1 mouse_genomes_project X 81961908 82016215 + MGP_CASTEiJ_P0097140 Dlg3 protein_coding protein_coding MGP_CASTEiJ_T0097141.1 MGP_CASTEiJ_G0034913.1 mouse_genomes_project X 81962154 82016217 + Dlg3 protein_coding retained_intron MGP_CASTEiJ_T0097142.1 MGP_CASTEiJ_G0034913.1 mouse_genomes_project X 81968906 82016215 + MGP_CASTEiJ_P0097142 Dlg3 protein_coding protein_coding MGP_CASTEiJ_T0097143.1 MGP_CASTEiJ_G0034913.1 mouse_genomes_project X 81971391 82016215 + Dlg3 protein_coding processed_transcript MGP_CASTEiJ_T0097144.1 MGP_CASTEiJ_G0034913.1 mouse_genomes_project X 81990671 82004431 + Dlg3 protein_coding processed_transcript MGP_CASTEiJ_T0097145.1 MGP_CASTEiJ_G0034913.1 mouse_genomes_project X 82005811 82012641 + Dlg3 protein_coding processed_transcript MGP_CASTEiJ_T0098195.1 MGP_CASTEiJ_G0035208.1 mouse_genomes_project X 141468489 141473871 - MGP_CASTEiJ_P0098195 protein_coding protein_coding MGP_CASTEiJ_T0015784.1 MGP_CASTEiJ_G0013947.1 mouse_genomes_project X 56197079 56197662 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097951.1 MGP_CASTEiJ_G0035146.1 mouse_genomes_project X 129379051 129382148 + MGP_CASTEiJ_P0097951 Hsd17b10 protein_coding protein_coding MGP_CASTEiJ_T0097952.1 MGP_CASTEiJ_G0035146.1 mouse_genomes_project X 129379051 129382148 + MGP_CASTEiJ_P0097952 Hsd17b10 protein_coding protein_coding MGP_CASTEiJ_T0097953.1 MGP_CASTEiJ_G0035146.1 mouse_genomes_project X 129379356 129382148 + Hsd17b10 protein_coding processed_transcript MGP_CASTEiJ_T0097954.1 MGP_CASTEiJ_G0035146.1 mouse_genomes_project X 129381102 129382148 + Hsd17b10 protein_coding retained_intron MGP_CASTEiJ_T0015914.1 MGP_CASTEiJ_G0014077.1 mouse_genomes_project X 83003475 83003982 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097403.1 MGP_CASTEiJ_G0034985.1 mouse_genomes_project X 90433203 90510239 + MGP_CASTEiJ_P0097403 Sh3bgrl protein_coding protein_coding MGP_CASTEiJ_T0097404.1 MGP_CASTEiJ_G0034985.1 mouse_genomes_project X 90433347 90542245 + Sh3bgrl protein_coding processed_transcript MGP_CASTEiJ_T0097405.1 MGP_CASTEiJ_G0034985.1 mouse_genomes_project X 90454912 90502130 + Sh3bgrl protein_coding processed_transcript MGP_CASTEiJ_T0096981.1 MGP_CASTEiJ_G0034872.1 mouse_genomes_project X 75618533 75654112 - MGP_CASTEiJ_P0096981 Eif2s3x protein_coding protein_coding MGP_CASTEiJ_T0096982.1 MGP_CASTEiJ_G0034872.1 mouse_genomes_project X 75629465 75654054 - MGP_CASTEiJ_P0096982 Eif2s3x protein_coding protein_coding MGP_CASTEiJ_T0096983.1 MGP_CASTEiJ_G0034872.1 mouse_genomes_project X 75642824 75654265 - Eif2s3x protein_coding processed_transcript MGP_CASTEiJ_T0010882.1 MGP_CASTEiJ_G0009070.1 mouse_genomes_project X 87617760 87617870 + Gm27428 miRNA miRNA MGP_CASTEiJ_T0016006.1 MGP_CASTEiJ_G0014169.1 mouse_genomes_project X 97836222 97836525 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096750.1 MGP_CASTEiJ_G0034804.1 mouse_genomes_project X 55985884 55989095 + Plxna3 protein_coding processed_transcript MGP_CASTEiJ_T0096751.1 MGP_CASTEiJ_G0034804.1 mouse_genomes_project X 55985884 56001526 + MGP_CASTEiJ_P0096751 Plxna3 protein_coding protein_coding MGP_CASTEiJ_T0096752.1 MGP_CASTEiJ_G0034804.1 mouse_genomes_project X 55989308 56001520 + Plxna3 protein_coding retained_intron MGP_CASTEiJ_T0096753.1 MGP_CASTEiJ_G0034804.1 mouse_genomes_project X 55990597 55991555 + Plxna3 protein_coding retained_intron MGP_CASTEiJ_T0096754.1 MGP_CASTEiJ_G0034804.1 mouse_genomes_project X 55991177 55992674 + Plxna3 protein_coding retained_intron MGP_CASTEiJ_T0096755.1 MGP_CASTEiJ_G0034804.1 mouse_genomes_project X 55992083 55993171 + Plxna3 protein_coding retained_intron MGP_CASTEiJ_T0096756.1 MGP_CASTEiJ_G0034804.1 mouse_genomes_project X 55995100 55996151 + Plxna3 protein_coding retained_intron MGP_CASTEiJ_T0096757.1 MGP_CASTEiJ_G0034804.1 mouse_genomes_project X 55995183 55995994 + Plxna3 protein_coding retained_intron MGP_CASTEiJ_T0096758.1 MGP_CASTEiJ_G0034804.1 mouse_genomes_project X 55998421 56000782 + Plxna3 protein_coding retained_intron MGP_CASTEiJ_T0098694.1 MGP_CASTEiJ_G0035625.1 mouse_genomes_project X 64592881 64592998 + n-R5s9 rRNA rRNA MGP_CASTEiJ_T0102656.1 MGP_CASTEiJ_G0039380.1 mouse_genomes_project X 131686061 131689581 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0097360.1 MGP_CASTEiJ_G0034970.1 mouse_genomes_project X 88003914 88035597 - MGP_CASTEiJ_P0097360 Cysltr1 protein_coding protein_coding MGP_CASTEiJ_T0097361.1 MGP_CASTEiJ_G0034970.1 mouse_genomes_project X 88008371 88011413 - MGP_CASTEiJ_P0097361 Cysltr1 protein_coding protein_coding MGP_CASTEiJ_T0102652.1 MGP_CASTEiJ_G0039376.1 mouse_genomes_project X 123598992 123600206 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015595.1 MGP_CASTEiJ_G0013758.1 mouse_genomes_project X 9608615 9609345 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011452.1 MGP_CASTEiJ_G0009640.1 mouse_genomes_project X 140053667 140053968 + Gm22257 misc_RNA misc_RNA MGP_CASTEiJ_T0015724.1 MGP_CASTEiJ_G0013887.1 mouse_genomes_project X 42506522 42507097 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099059.1 MGP_CASTEiJ_G0035972.1 mouse_genomes_project X 564269 637490 - Gm26618 sense_overlapping sense_overlapping MGP_CASTEiJ_T0009212.1 MGP_CASTEiJ_G0007400.1 mouse_genomes_project X 144446867 144461007 - Gm15232 lincRNA lincRNA MGP_CASTEiJ_T0015897.1 MGP_CASTEiJ_G0014060.1 mouse_genomes_project X 78442679 78443942 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098305.1 MGP_CASTEiJ_G0035237.1 mouse_genomes_project X 147353510 147355969 - protein_coding processed_transcript MGP_CASTEiJ_T0098306.1 MGP_CASTEiJ_G0035237.1 mouse_genomes_project X 147353510 147355969 - protein_coding processed_transcript MGP_CASTEiJ_T0016137.1 MGP_CASTEiJ_G0014300.1 mouse_genomes_project X 123507227 123507861 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010823.1 MGP_CASTEiJ_G0009011.1 mouse_genomes_project X 35658702 35658785 - Mir18b miRNA miRNA MGP_CASTEiJ_T0096251.1 MGP_CASTEiJ_G0034672.1 mouse_genomes_project X 33710177 33764919 + MGP_CASTEiJ_P0096251 Stk26 protein_coding protein_coding MGP_CASTEiJ_T0096252.1 MGP_CASTEiJ_G0034672.1 mouse_genomes_project X 33710571 33751822 + Stk26 protein_coding retained_intron MGP_CASTEiJ_T0096253.1 MGP_CASTEiJ_G0034672.1 mouse_genomes_project X 33710571 33764919 + MGP_CASTEiJ_P0096253 Stk26 protein_coding protein_coding MGP_CASTEiJ_T0096254.1 MGP_CASTEiJ_G0034672.1 mouse_genomes_project X 33750127 33763680 + Stk26 protein_coding retained_intron MGP_CASTEiJ_T0016078.1 MGP_CASTEiJ_G0014241.1 mouse_genomes_project X 114809940 114810568 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016031.1 MGP_CASTEiJ_G0014194.1 mouse_genomes_project X 102753375 102757292 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097654.1 MGP_CASTEiJ_G0035076.1 mouse_genomes_project X 115194446 115207462 - MGP_CASTEiJ_P0097654 protein_coding protein_coding MGP_CASTEiJ_T0097249.1 MGP_CASTEiJ_G0034936.1 mouse_genomes_project X 83529769 83534826 - MGP_CASTEiJ_P0097249 Cited1 protein_coding protein_coding MGP_CASTEiJ_T0097250.1 MGP_CASTEiJ_G0034936.1 mouse_genomes_project X 83529792 83534497 - MGP_CASTEiJ_P0097250 Cited1 protein_coding protein_coding MGP_CASTEiJ_T0097251.1 MGP_CASTEiJ_G0034936.1 mouse_genomes_project X 83530102 83533596 - MGP_CASTEiJ_P0097251 Cited1 protein_coding protein_coding MGP_CASTEiJ_T0097252.1 MGP_CASTEiJ_G0034936.1 mouse_genomes_project X 83530209 83533425 - MGP_CASTEiJ_P0097252 Cited1 protein_coding protein_coding MGP_CASTEiJ_T0097253.1 MGP_CASTEiJ_G0034936.1 mouse_genomes_project X 83530274 83534563 - MGP_CASTEiJ_P0097253 Cited1 protein_coding protein_coding MGP_CASTEiJ_T0015655.1 MGP_CASTEiJ_G0013818.1 mouse_genomes_project X 24921429 24921813 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015760.1 MGP_CASTEiJ_G0013923.1 mouse_genomes_project X 49610878 49611181 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015652.1 MGP_CASTEiJ_G0013815.1 mouse_genomes_project X 23957235 23957514 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097410.1 MGP_CASTEiJ_G0034989.1 mouse_genomes_project X 92404544 92404898 + MGP_CASTEiJ_P0097410 Gm10112 protein_coding protein_coding MGP_CASTEiJ_T0096891.1 MGP_CASTEiJ_G0034844.1 mouse_genomes_project X 60002946 60143191 - MGP_CASTEiJ_P0096891 Prrg1 protein_coding protein_coding MGP_CASTEiJ_T0096892.1 MGP_CASTEiJ_G0034844.1 mouse_genomes_project X 60002946 60143305 - MGP_CASTEiJ_P0096892 Prrg1 protein_coding protein_coding MGP_CASTEiJ_T0096893.1 MGP_CASTEiJ_G0034844.1 mouse_genomes_project X 60002946 60143300 - MGP_CASTEiJ_P0096893 Prrg1 protein_coding protein_coding MGP_CASTEiJ_T0096894.1 MGP_CASTEiJ_G0034844.1 mouse_genomes_project X 60023673 60143264 - Prrg1 protein_coding processed_transcript MGP_CASTEiJ_T0096895.1 MGP_CASTEiJ_G0034844.1 mouse_genomes_project X 60034571 60143191 - Prrg1 protein_coding retained_intron MGP_CASTEiJ_T0096896.1 MGP_CASTEiJ_G0034844.1 mouse_genomes_project X 60034586 60143305 - Prrg1 protein_coding retained_intron MGP_CASTEiJ_T0096897.1 MGP_CASTEiJ_G0034844.1 mouse_genomes_project X 60037672 60143303 - MGP_CASTEiJ_P0096897 Prrg1 protein_coding protein_coding MGP_CASTEiJ_T0096898.1 MGP_CASTEiJ_G0034844.1 mouse_genomes_project X 60076827 60143300 - Prrg1 protein_coding retained_intron MGP_CASTEiJ_T0096899.1 MGP_CASTEiJ_G0034844.1 mouse_genomes_project X 60079388 60143299 - Prrg1 protein_coding retained_intron MGP_CASTEiJ_T0096900.1 MGP_CASTEiJ_G0034844.1 mouse_genomes_project X 60079854 60143261 - Prrg1 protein_coding processed_transcript MGP_CASTEiJ_T0101442.1 MGP_CASTEiJ_G0038355.1 mouse_genomes_project X 63678728 63678865 - Gm24706 snoRNA snoRNA MGP_CASTEiJ_T0015689.1 MGP_CASTEiJ_G0013852.1 mouse_genomes_project X 34108515 34108952 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102618.1 MGP_CASTEiJ_G0039342.1 mouse_genomes_project X 21403813 21404046 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0095808.1 MGP_CASTEiJ_G0034532.1 mouse_genomes_project X 3761604 3873199 + MGP_CASTEiJ_P0095808 Lancl3 protein_coding protein_coding MGP_CASTEiJ_T0015997.1 MGP_CASTEiJ_G0014160.1 mouse_genomes_project X 95849692 95849899 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097873.1 MGP_CASTEiJ_G0035137.1 mouse_genomes_project X 128015686 128031404 - MGP_CASTEiJ_P0097873 protein_coding protein_coding MGP_CASTEiJ_T0097874.1 MGP_CASTEiJ_G0035137.1 mouse_genomes_project X 128015686 128031441 - MGP_CASTEiJ_P0097874 protein_coding protein_coding MGP_CASTEiJ_T0097875.1 MGP_CASTEiJ_G0035137.1 mouse_genomes_project X 128015686 128031404 - MGP_CASTEiJ_P0097875 protein_coding protein_coding MGP_CASTEiJ_T0097876.1 MGP_CASTEiJ_G0035137.1 mouse_genomes_project X 128015804 128026582 - MGP_CASTEiJ_P0097876 protein_coding protein_coding MGP_CASTEiJ_T0097877.1 MGP_CASTEiJ_G0035137.1 mouse_genomes_project X 128016083 128031467 - MGP_CASTEiJ_P0097877 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097878.1 MGP_CASTEiJ_G0035137.1 mouse_genomes_project X 128019987 128022347 - protein_coding retained_intron MGP_CASTEiJ_T0097879.1 MGP_CASTEiJ_G0035137.1 mouse_genomes_project X 128020140 128031404 - MGP_CASTEiJ_P0097879 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097880.1 MGP_CASTEiJ_G0035137.1 mouse_genomes_project X 128020264 128022396 - protein_coding retained_intron MGP_CASTEiJ_T0097881.1 MGP_CASTEiJ_G0035137.1 mouse_genomes_project X 128021980 128023523 - protein_coding retained_intron MGP_CASTEiJ_T0097882.1 MGP_CASTEiJ_G0035137.1 mouse_genomes_project X 128024061 128031377 - MGP_CASTEiJ_P0097882 protein_coding protein_coding MGP_CASTEiJ_T0015870.1 MGP_CASTEiJ_G0014033.1 mouse_genomes_project X 75333859 75334130 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015559.1 MGP_CASTEiJ_G0013722.1 mouse_genomes_project X 2090959 2091254 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016102.1 MGP_CASTEiJ_G0014265.1 mouse_genomes_project X 119186820 119189390 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098016.1 MGP_CASTEiJ_G0035167.1 mouse_genomes_project X 131899632 131903225 - MGP_CASTEiJ_P0098016 protein_coding protein_coding MGP_CASTEiJ_T0096311.1 MGP_CASTEiJ_G0034701.1 mouse_genomes_project X 38234530 38237944 + MGP_CASTEiJ_P0096311 Gm10477 protein_coding protein_coding MGP_CASTEiJ_T0015946.1 MGP_CASTEiJ_G0014109.1 mouse_genomes_project X 85406765 85407037 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016086.1 MGP_CASTEiJ_G0014249.1 mouse_genomes_project X 115380320 115380916 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016209.1 MGP_CASTEiJ_G0014372.1 mouse_genomes_project X 138856916 138857844 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015988.1 MGP_CASTEiJ_G0014151.1 mouse_genomes_project X 94030501 94030709 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015974.1 MGP_CASTEiJ_G0014137.1 mouse_genomes_project X 91861582 91864190 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096984.1 MGP_CASTEiJ_G0034873.1 mouse_genomes_project X 75680535 75684097 + Klhl15 protein_coding processed_transcript MGP_CASTEiJ_T0096985.1 MGP_CASTEiJ_G0034873.1 mouse_genomes_project X 75680540 75694038 + MGP_CASTEiJ_P0096985 Klhl15 protein_coding protein_coding MGP_CASTEiJ_T0096986.1 MGP_CASTEiJ_G0034873.1 mouse_genomes_project X 75680863 75695365 + MGP_CASTEiJ_P0096986 Klhl15 protein_coding protein_coding MGP_CASTEiJ_T0096987.1 MGP_CASTEiJ_G0034873.1 mouse_genomes_project X 75680866 75715147 + MGP_CASTEiJ_P0096987 Klhl15 protein_coding protein_coding MGP_CASTEiJ_T0096988.1 MGP_CASTEiJ_G0034873.1 mouse_genomes_project X 75680923 75697292 + MGP_CASTEiJ_P0096988 Klhl15 protein_coding protein_coding MGP_CASTEiJ_T0096989.1 MGP_CASTEiJ_G0034873.1 mouse_genomes_project X 75680926 75714374 + Klhl15 protein_coding retained_intron MGP_CASTEiJ_T0096990.1 MGP_CASTEiJ_G0034873.1 mouse_genomes_project X 75680926 75695369 + MGP_CASTEiJ_P0096990 Klhl15 protein_coding protein_coding MGP_CASTEiJ_T0096991.1 MGP_CASTEiJ_G0034873.1 mouse_genomes_project X 75681247 75715141 + MGP_CASTEiJ_P0096991 Klhl15 protein_coding protein_coding MGP_CASTEiJ_T0096992.1 MGP_CASTEiJ_G0034873.1 mouse_genomes_project X 75681746 75719224 + MGP_CASTEiJ_P0096992 Klhl15 protein_coding protein_coding MGP_CASTEiJ_T0097767.1 MGP_CASTEiJ_G0035111.1 mouse_genomes_project X 119795109 120022323 + MGP_CASTEiJ_P0097767 Col4a5 protein_coding protein_coding MGP_CASTEiJ_T0097768.1 MGP_CASTEiJ_G0035111.1 mouse_genomes_project X 119795134 120022269 + MGP_CASTEiJ_P0097768 Col4a5 protein_coding protein_coding MGP_CASTEiJ_T0097769.1 MGP_CASTEiJ_G0035111.1 mouse_genomes_project X 119960088 120022323 + MGP_CASTEiJ_P0097769 Col4a5 protein_coding protein_coding MGP_CASTEiJ_T0097770.1 MGP_CASTEiJ_G0035111.1 mouse_genomes_project X 119989519 120010726 + Col4a5 protein_coding processed_transcript MGP_CASTEiJ_T0097712.1 MGP_CASTEiJ_G0035096.1 mouse_genomes_project X 118148723 118159314 + MGP_CASTEiJ_P0097712 Cldn2 protein_coding protein_coding MGP_CASTEiJ_T0097713.1 MGP_CASTEiJ_G0035096.1 mouse_genomes_project X 118150693 118156624 + MGP_CASTEiJ_P0097713 Cldn2 protein_coding protein_coding MGP_CASTEiJ_T0097714.1 MGP_CASTEiJ_G0035096.1 mouse_genomes_project X 118153991 118157012 + MGP_CASTEiJ_P0097714 Cldn2 protein_coding protein_coding MGP_CASTEiJ_T0096913.1 MGP_CASTEiJ_G0034849.1 mouse_genomes_project X 62781067 62814946 - MGP_CASTEiJ_P0096913 4930595M18Rik protein_coding protein_coding MGP_CASTEiJ_T0015895.1 MGP_CASTEiJ_G0014058.1 mouse_genomes_project X 78256709 78257101 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098147.1 MGP_CASTEiJ_G0035197.1 mouse_genomes_project X 139777489 139929285 - MGP_CASTEiJ_P0098147 Reps2 protein_coding protein_coding MGP_CASTEiJ_T0098148.1 MGP_CASTEiJ_G0035197.1 mouse_genomes_project X 139777489 140007267 - MGP_CASTEiJ_P0098148 Reps2 protein_coding protein_coding MGP_CASTEiJ_T0098149.1 MGP_CASTEiJ_G0035197.1 mouse_genomes_project X 139777489 140007315 - MGP_CASTEiJ_P0098149 Reps2 protein_coding protein_coding MGP_CASTEiJ_T0098150.1 MGP_CASTEiJ_G0035197.1 mouse_genomes_project X 139893935 139929383 - Reps2 protein_coding processed_transcript MGP_CASTEiJ_T0098151.1 MGP_CASTEiJ_G0035197.1 mouse_genomes_project X 139911459 139917828 - Reps2 protein_coding retained_intron MGP_CASTEiJ_T0010820.1 MGP_CASTEiJ_G0009008.1 mouse_genomes_project X 35318786 35318895 - Mir717 miRNA miRNA MGP_CASTEiJ_T0097097.1 MGP_CASTEiJ_G0034901.1 mouse_genomes_project X 81025475 81053163 + MGP_CASTEiJ_P0097097 Tmem28 protein_coding protein_coding MGP_CASTEiJ_T0097098.1 MGP_CASTEiJ_G0034901.1 mouse_genomes_project X 81025657 81060978 + MGP_CASTEiJ_P0097098 Tmem28 protein_coding unknown_likely_coding MGP_CASTEiJ_T0101458.1 MGP_CASTEiJ_G0038371.1 mouse_genomes_project X 110716419 110716550 - Gm23768 snoRNA snoRNA MGP_CASTEiJ_T0097732.1 MGP_CASTEiJ_G0035099.1 mouse_genomes_project X 118360914 118416203 - MGP_CASTEiJ_P0097732 Nup62cl protein_coding unknown_likely_coding MGP_CASTEiJ_T0097733.1 MGP_CASTEiJ_G0035099.1 mouse_genomes_project X 118360997 118405422 - MGP_CASTEiJ_P0097733 Nup62cl protein_coding protein_coding MGP_CASTEiJ_T0097734.1 MGP_CASTEiJ_G0035099.1 mouse_genomes_project X 118375949 118416955 - MGP_CASTEiJ_P0097734 Nup62cl protein_coding protein_coding MGP_CASTEiJ_T0097735.1 MGP_CASTEiJ_G0035099.1 mouse_genomes_project X 118381487 118417374 - MGP_CASTEiJ_P0097735 Nup62cl protein_coding protein_coding MGP_CASTEiJ_T0097736.1 MGP_CASTEiJ_G0035099.1 mouse_genomes_project X 118382087 118417242 - MGP_CASTEiJ_P0097736 Nup62cl protein_coding protein_coding MGP_CASTEiJ_T0097737.1 MGP_CASTEiJ_G0035099.1 mouse_genomes_project X 118388718 118417213 - MGP_CASTEiJ_P0097737 Nup62cl protein_coding protein_coding MGP_CASTEiJ_T0098031.1 MGP_CASTEiJ_G0035171.1 mouse_genomes_project X 132959829 133011116 - MGP_CASTEiJ_P0098031 Ptchd1 protein_coding protein_coding MGP_CASTEiJ_T0098032.1 MGP_CASTEiJ_G0035171.1 mouse_genomes_project X 132973428 133011590 - Ptchd1 protein_coding processed_transcript MGP_CASTEiJ_T0096901.1 MGP_CASTEiJ_G0034845.1 mouse_genomes_project X 60278900 60280534 + MGP_CASTEiJ_P0096901 Fam47c protein_coding protein_coding MGP_CASTEiJ_T0016191.1 MGP_CASTEiJ_G0014354.1 mouse_genomes_project X 135017579 135017800 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096609.1 MGP_CASTEiJ_G0034788.1 mouse_genomes_project X 55523758 55530275 - MGP_CASTEiJ_P0096609 Naa10 protein_coding protein_coding MGP_CASTEiJ_T0096610.1 MGP_CASTEiJ_G0034788.1 mouse_genomes_project X 55525206 55528197 - Naa10 protein_coding processed_transcript MGP_CASTEiJ_T0096611.1 MGP_CASTEiJ_G0034788.1 mouse_genomes_project X 55525206 55530325 - MGP_CASTEiJ_P0096611 Naa10 protein_coding protein_coding MGP_CASTEiJ_T0096612.1 MGP_CASTEiJ_G0034788.1 mouse_genomes_project X 55525229 55530265 - MGP_CASTEiJ_P0096612 Naa10 protein_coding protein_coding MGP_CASTEiJ_T0096613.1 MGP_CASTEiJ_G0034788.1 mouse_genomes_project X 55525253 55530213 - MGP_CASTEiJ_P0096613 Naa10 protein_coding protein_coding MGP_CASTEiJ_T0096614.1 MGP_CASTEiJ_G0034788.1 mouse_genomes_project X 55525425 55528242 - Naa10 protein_coding processed_transcript MGP_CASTEiJ_T0096615.1 MGP_CASTEiJ_G0034788.1 mouse_genomes_project X 55525807 55530209 - MGP_CASTEiJ_P0096615 Naa10 protein_coding protein_coding MGP_CASTEiJ_T0096616.1 MGP_CASTEiJ_G0034788.1 mouse_genomes_project X 55526194 55528800 - Naa10 protein_coding retained_intron MGP_CASTEiJ_T0096617.1 MGP_CASTEiJ_G0034788.1 mouse_genomes_project X 55526402 55530287 - Naa10 protein_coding retained_intron MGP_CASTEiJ_T0096618.1 MGP_CASTEiJ_G0034788.1 mouse_genomes_project X 55529356 55530236 - Naa10 protein_coding retained_intron MGP_CASTEiJ_T0096619.1 MGP_CASTEiJ_G0034788.1 mouse_genomes_project X 55529492 55530233 - Naa10 protein_coding retained_intron MGP_CASTEiJ_T0005458.1 MGP_CASTEiJ_G0004610.1 mouse_genomes_project X 84813517 84869396 + Tsix antisense antisense MGP_CASTEiJ_T0017847.1 MGP_CASTEiJ_G0015082.1 mouse_genomes_project X 2104242 2152422 - Gm36995 processed_transcript retained_intron MGP_CASTEiJ_T0017854.1 MGP_CASTEiJ_G0015087.1 mouse_genomes_project X 13647505 13658375 - Gm14636 processed_transcript processed_transcript MGP_CASTEiJ_T0017855.1 MGP_CASTEiJ_G0015087.1 mouse_genomes_project X 13652660 13658384 - Gm14636 processed_transcript processed_transcript MGP_CASTEiJ_T0016095.1 MGP_CASTEiJ_G0014258.1 mouse_genomes_project X 117578026 117579164 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015662.1 MGP_CASTEiJ_G0013825.1 mouse_genomes_project X 26623636 26624294 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097499.1 MGP_CASTEiJ_G0035023.1 mouse_genomes_project X 112040825 112087500 - MGP_CASTEiJ_P0097499 Sytl4 protein_coding protein_coding MGP_CASTEiJ_T0097500.1 MGP_CASTEiJ_G0035023.1 mouse_genomes_project X 112040825 112087529 - MGP_CASTEiJ_P0097500 Sytl4 protein_coding protein_coding MGP_CASTEiJ_T0097501.1 MGP_CASTEiJ_G0035023.1 mouse_genomes_project X 112052147 112087529 - MGP_CASTEiJ_P0097501 Sytl4 protein_coding protein_coding MGP_CASTEiJ_T0097502.1 MGP_CASTEiJ_G0035023.1 mouse_genomes_project X 112056007 112066690 - Sytl4 protein_coding processed_transcript MGP_CASTEiJ_T0097503.1 MGP_CASTEiJ_G0035023.1 mouse_genomes_project X 112058050 112087526 - MGP_CASTEiJ_P0097503 Sytl4 protein_coding protein_coding MGP_CASTEiJ_T0011430.1 MGP_CASTEiJ_G0009618.1 mouse_genomes_project X 69296588 69296872 - Gm24812 misc_RNA misc_RNA MGP_CASTEiJ_T0016061.1 MGP_CASTEiJ_G0014224.1 mouse_genomes_project X 112158269 112159896 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016156.1 MGP_CASTEiJ_G0014319.1 mouse_genomes_project X 128379100 128379759 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016014.1 MGP_CASTEiJ_G0014177.1 mouse_genomes_project X 98801589 98802035 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097233.1 MGP_CASTEiJ_G0034931.1 mouse_genomes_project X 83093996 83199169 + Nhsl2 protein_coding processed_transcript MGP_CASTEiJ_T0097234.1 MGP_CASTEiJ_G0034931.1 mouse_genomes_project X 83093996 83330963 + MGP_CASTEiJ_P0097234 Nhsl2 protein_coding protein_coding MGP_CASTEiJ_T0097235.1 MGP_CASTEiJ_G0034931.1 mouse_genomes_project X 83093996 83346656 + MGP_CASTEiJ_P0097235 Nhsl2 protein_coding protein_coding MGP_CASTEiJ_T0097236.1 MGP_CASTEiJ_G0034931.1 mouse_genomes_project X 83094151 83350289 + MGP_CASTEiJ_P0097236 Nhsl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097237.1 MGP_CASTEiJ_G0034931.1 mouse_genomes_project X 83212416 83332568 + Nhsl2 protein_coding processed_transcript MGP_CASTEiJ_T0097238.1 MGP_CASTEiJ_G0034931.1 mouse_genomes_project X 83256302 83332543 + MGP_CASTEiJ_P0097238 Nhsl2 protein_coding protein_coding MGP_CASTEiJ_T0097239.1 MGP_CASTEiJ_G0034931.1 mouse_genomes_project X 83306015 83326643 + Nhsl2 protein_coding processed_transcript MGP_CASTEiJ_T0097243.1 MGP_CASTEiJ_G0034931.1 mouse_genomes_project X 83327628 83334978 + Nhsl2 protein_coding processed_transcript MGP_CASTEiJ_T0010850.1 MGP_CASTEiJ_G0009038.1 mouse_genomes_project X 48459652 48459715 - Mir465d miRNA miRNA MGP_CASTEiJ_T0098276.1 MGP_CASTEiJ_G0035230.1 mouse_genomes_project X 144704193 144741321 - MGP_CASTEiJ_P0098276 Prps2 protein_coding protein_coding MGP_CASTEiJ_T0098277.1 MGP_CASTEiJ_G0035230.1 mouse_genomes_project X 144730950 144741282 - Prps2 protein_coding processed_transcript MGP_CASTEiJ_T0098221.1 MGP_CASTEiJ_G0035217.1 mouse_genomes_project X 142321130 142369737 - MGP_CASTEiJ_P0098221 Mospd2 protein_coding protein_coding MGP_CASTEiJ_T0098222.1 MGP_CASTEiJ_G0035217.1 mouse_genomes_project X 142321228 142369661 - MGP_CASTEiJ_P0098222 Mospd2 protein_coding protein_coding MGP_CASTEiJ_T0098223.1 MGP_CASTEiJ_G0035217.1 mouse_genomes_project X 142323116 142369699 - MGP_CASTEiJ_P0098223 Mospd2 protein_coding protein_coding MGP_CASTEiJ_T0098224.1 MGP_CASTEiJ_G0035217.1 mouse_genomes_project X 142339269 142369692 - Mospd2 protein_coding retained_intron MGP_CASTEiJ_T0098225.1 MGP_CASTEiJ_G0035217.1 mouse_genomes_project X 142339274 142369692 - Mospd2 protein_coding retained_intron MGP_CASTEiJ_T0098226.1 MGP_CASTEiJ_G0035217.1 mouse_genomes_project X 142344334 142369689 - Mospd2 protein_coding retained_intron MGP_CASTEiJ_T0098227.1 MGP_CASTEiJ_G0035217.1 mouse_genomes_project X 142348104 142369691 - Mospd2 protein_coding retained_intron MGP_CASTEiJ_T0098228.1 MGP_CASTEiJ_G0035217.1 mouse_genomes_project X 142348430 142369705 - Mospd2 protein_coding processed_transcript MGP_CASTEiJ_T0098229.1 MGP_CASTEiJ_G0035217.1 mouse_genomes_project X 142369024 142369686 - Mospd2 protein_coding retained_intron MGP_CASTEiJ_T0016182.1 MGP_CASTEiJ_G0014345.1 mouse_genomes_project X 134127673 134127956 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016073.1 MGP_CASTEiJ_G0014236.1 mouse_genomes_project X 114257626 114258451 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015952.1 MGP_CASTEiJ_G0014115.1 mouse_genomes_project X 87043123 87043315 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097116.1 MGP_CASTEiJ_G0034907.1 mouse_genomes_project X 81763845 81769786 + MGP_CASTEiJ_P0097116 Awat1 protein_coding protein_coding MGP_CASTEiJ_T0015659.1 MGP_CASTEiJ_G0013822.1 mouse_genomes_project X 25346053 25348341 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000302.1 MGP_CASTEiJ_G0000251.1 mouse_genomes_project X 117183004 117183433 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0009213.1 MGP_CASTEiJ_G0007401.1 mouse_genomes_project X 144525372 144532482 + Gm15228 lincRNA lincRNA MGP_CASTEiJ_T0016199.1 MGP_CASTEiJ_G0014362.1 mouse_genomes_project X 136739058 136739322 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015698.1 MGP_CASTEiJ_G0013861.1 mouse_genomes_project X 35795053 35796451 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098685.1 MGP_CASTEiJ_G0035616.1 mouse_genomes_project X 651970 652089 + n-R5s2 rRNA rRNA MGP_CASTEiJ_T0016136.1 MGP_CASTEiJ_G0014299.1 mouse_genomes_project X 123129146 123129749 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010799.1 MGP_CASTEiJ_G0008987.1 mouse_genomes_project X 1760766 1760858 - Mir500 miRNA miRNA MGP_CASTEiJ_T0015840.1 MGP_CASTEiJ_G0014003.1 mouse_genomes_project X 70074389 70074647 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015696.1 MGP_CASTEiJ_G0013859.1 mouse_genomes_project X 35699490 35699812 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017918.1 MGP_CASTEiJ_G0015107.1 mouse_genomes_project X 113520464 113783518 + processed_transcript processed_transcript MGP_CASTEiJ_T0015702.1 MGP_CASTEiJ_G0013865.1 mouse_genomes_project X 36603919 36604120 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016205.1 MGP_CASTEiJ_G0014368.1 mouse_genomes_project X 137690057 137691398 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015910.1 MGP_CASTEiJ_G0014073.1 mouse_genomes_project X 82255911 82256194 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015705.1 MGP_CASTEiJ_G0013868.1 mouse_genomes_project X 37979849 37998794 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016135.1 MGP_CASTEiJ_G0014298.1 mouse_genomes_project X 122866799 122867923 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096562.1 MGP_CASTEiJ_G0034783.1 mouse_genomes_project X 55381884 55385677 + MGP_CASTEiJ_P0096562 Ssr4 protein_coding protein_coding MGP_CASTEiJ_T0096563.1 MGP_CASTEiJ_G0034783.1 mouse_genomes_project X 55381918 55385679 + MGP_CASTEiJ_P0096563 Ssr4 protein_coding protein_coding MGP_CASTEiJ_T0096564.1 MGP_CASTEiJ_G0034783.1 mouse_genomes_project X 55382038 55383949 + Ssr4 protein_coding retained_intron MGP_CASTEiJ_T0096565.1 MGP_CASTEiJ_G0034783.1 mouse_genomes_project X 55382040 55385185 + Ssr4 protein_coding retained_intron MGP_CASTEiJ_T0096566.1 MGP_CASTEiJ_G0034783.1 mouse_genomes_project X 55382040 55385679 + Ssr4 protein_coding retained_intron MGP_CASTEiJ_T0096567.1 MGP_CASTEiJ_G0034783.1 mouse_genomes_project X 55382080 55385664 + Ssr4 protein_coding retained_intron MGP_CASTEiJ_T0096568.1 MGP_CASTEiJ_G0034783.1 mouse_genomes_project X 55382121 55385016 + Ssr4 protein_coding retained_intron MGP_CASTEiJ_T0096569.1 MGP_CASTEiJ_G0034783.1 mouse_genomes_project X 55383700 55385683 + Ssr4 protein_coding retained_intron MGP_CASTEiJ_T0096294.1 MGP_CASTEiJ_G0034690.1 mouse_genomes_project X 36478881 36480066 + MGP_CASTEiJ_P0096294 protein_coding protein_coding MGP_CASTEiJ_T0015623.1 MGP_CASTEiJ_G0013786.1 mouse_genomes_project X 16640965 16642941 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096544.1 MGP_CASTEiJ_G0034780.1 mouse_genomes_project X 55351422 55366964 + Plxnb3 protein_coding retained_intron MGP_CASTEiJ_T0096545.1 MGP_CASTEiJ_G0034780.1 mouse_genomes_project X 55351422 55366964 + Plxnb3 protein_coding retained_intron MGP_CASTEiJ_T0096546.1 MGP_CASTEiJ_G0034780.1 mouse_genomes_project X 55351422 55366964 + Plxnb3 protein_coding retained_intron MGP_CASTEiJ_T0096547.1 MGP_CASTEiJ_G0034780.1 mouse_genomes_project X 55351431 55366964 + MGP_CASTEiJ_P0096547 Plxnb3 protein_coding protein_coding MGP_CASTEiJ_T0096548.1 MGP_CASTEiJ_G0034780.1 mouse_genomes_project X 55359996 55364116 + Plxnb3 protein_coding retained_intron MGP_CASTEiJ_T0015729.1 MGP_CASTEiJ_G0013892.1 mouse_genomes_project X 43170790 43171633 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097725.1 MGP_CASTEiJ_G0035098.1 mouse_genomes_project X 118239525 118352129 - MGP_CASTEiJ_P0097725 Rbm41 protein_coding protein_coding MGP_CASTEiJ_T0097726.1 MGP_CASTEiJ_G0035098.1 mouse_genomes_project X 118295619 118352091 - MGP_CASTEiJ_P0097726 Rbm41 protein_coding protein_coding MGP_CASTEiJ_T0097727.1 MGP_CASTEiJ_G0035098.1 mouse_genomes_project X 118295651 118352076 - MGP_CASTEiJ_P0097727 Rbm41 protein_coding protein_coding MGP_CASTEiJ_T0097728.1 MGP_CASTEiJ_G0035098.1 mouse_genomes_project X 118296482 118352085 - MGP_CASTEiJ_P0097728 Rbm41 protein_coding protein_coding MGP_CASTEiJ_T0097729.1 MGP_CASTEiJ_G0035098.1 mouse_genomes_project X 118320677 118347622 - Rbm41 protein_coding retained_intron MGP_CASTEiJ_T0097730.1 MGP_CASTEiJ_G0035098.1 mouse_genomes_project X 118321343 118352070 - Rbm41 protein_coding processed_transcript MGP_CASTEiJ_T0097731.1 MGP_CASTEiJ_G0035098.1 mouse_genomes_project X 118345895 118352100 - Rbm41 protein_coding retained_intron MGP_CASTEiJ_T0100204.1 MGP_CASTEiJ_G0037117.1 mouse_genomes_project X 74308637 74308742 + Gm25332 snRNA snRNA MGP_CASTEiJ_T0098135.1 MGP_CASTEiJ_G0035193.1 mouse_genomes_project X 138250624 138255542 - MGP_CASTEiJ_P0098135 Gja6 protein_coding protein_coding MGP_CASTEiJ_T0097597.1 MGP_CASTEiJ_G0035051.1 mouse_genomes_project X 113860873 113879314 + MGP_CASTEiJ_P0097597 Prame protein_coding protein_coding MGP_CASTEiJ_T0097598.1 MGP_CASTEiJ_G0035051.1 mouse_genomes_project X 113876510 113879172 + MGP_CASTEiJ_P0097598 Prame protein_coding protein_coding MGP_CASTEiJ_T0098696.1 MGP_CASTEiJ_G0035627.1 mouse_genomes_project X 84102760 84102861 + Gm26152 rRNA rRNA MGP_CASTEiJ_T0016003.1 MGP_CASTEiJ_G0014166.1 mouse_genomes_project X 96601261 96601651 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101434.1 MGP_CASTEiJ_G0038347.1 mouse_genomes_project X 55346927 55347050 + Gm25226 snoRNA snoRNA MGP_CASTEiJ_T0097785.1 MGP_CASTEiJ_G0035119.1 mouse_genomes_project X 121187276 121297067 - MGP_CASTEiJ_P0097785 Ammecr1 protein_coding protein_coding MGP_CASTEiJ_T0015614.1 MGP_CASTEiJ_G0013777.1 mouse_genomes_project X 14798073 14798851 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101468.1 MGP_CASTEiJ_G0038381.1 mouse_genomes_project X 128176065 128176193 - Gm24907 snoRNA snoRNA MGP_CASTEiJ_T0016176.1 MGP_CASTEiJ_G0014339.1 mouse_genomes_project X 132568446 132569148 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101432.1 MGP_CASTEiJ_G0038345.1 mouse_genomes_project X 50252261 50252389 - Gm22435 snoRNA snoRNA MGP_CASTEiJ_T0097287.1 MGP_CASTEiJ_G0034951.1 mouse_genomes_project X 85361710 85385888 - MGP_CASTEiJ_P0097287 Rlim protein_coding protein_coding MGP_CASTEiJ_T0097288.1 MGP_CASTEiJ_G0034951.1 mouse_genomes_project X 85361710 85385888 - MGP_CASTEiJ_P0097288 Rlim protein_coding protein_coding MGP_CASTEiJ_T0097289.1 MGP_CASTEiJ_G0034951.1 mouse_genomes_project X 85382378 85385888 - Rlim protein_coding retained_intron MGP_CASTEiJ_T0096054.1 MGP_CASTEiJ_G0034610.1 mouse_genomes_project X 20544981 20570117 + MGP_CASTEiJ_P0096054 Nkap protein_coding protein_coding MGP_CASTEiJ_T0096055.1 MGP_CASTEiJ_G0034610.1 mouse_genomes_project X 20556827 20562228 + Nkap protein_coding retained_intron MGP_CASTEiJ_T0096200.1 MGP_CASTEiJ_G0034657.1 mouse_genomes_project X 31506368 31543821 - Aifm1 protein_coding retained_intron MGP_CASTEiJ_T0096201.1 MGP_CASTEiJ_G0034657.1 mouse_genomes_project X 31506368 31543958 - MGP_CASTEiJ_P0096201 Aifm1 protein_coding protein_coding MGP_CASTEiJ_T0096202.1 MGP_CASTEiJ_G0034657.1 mouse_genomes_project X 31506368 31543954 - MGP_CASTEiJ_P0096202 Aifm1 protein_coding protein_coding MGP_CASTEiJ_T0096203.1 MGP_CASTEiJ_G0034657.1 mouse_genomes_project X 31506369 31513017 - Aifm1 protein_coding processed_transcript MGP_CASTEiJ_T0096204.1 MGP_CASTEiJ_G0034657.1 mouse_genomes_project X 31515578 31516639 - Aifm1 protein_coding processed_transcript MGP_CASTEiJ_T0015579.1 MGP_CASTEiJ_G0013742.1 mouse_genomes_project X 7125959 7126304 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015927.1 MGP_CASTEiJ_G0014090.1 mouse_genomes_project X 84395073 84395586 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097366.1 MGP_CASTEiJ_G0034974.1 mouse_genomes_project X 88504235 88521570 + MGP_CASTEiJ_P0097366 P2ry10 protein_coding protein_coding MGP_CASTEiJ_T0097367.1 MGP_CASTEiJ_G0034974.1 mouse_genomes_project X 88504973 88521575 + MGP_CASTEiJ_P0097367 P2ry10 protein_coding protein_coding MGP_CASTEiJ_T0097368.1 MGP_CASTEiJ_G0034974.1 mouse_genomes_project X 88505017 88521575 + MGP_CASTEiJ_P0097368 P2ry10 protein_coding protein_coding MGP_CASTEiJ_T0096130.1 MGP_CASTEiJ_G0034638.1 mouse_genomes_project X 25273849 25287102 + Xiap protein_coding processed_transcript MGP_CASTEiJ_T0096131.1 MGP_CASTEiJ_G0034638.1 mouse_genomes_project X 25282066 25326388 + MGP_CASTEiJ_P0096131 Xiap protein_coding protein_coding MGP_CASTEiJ_T0096132.1 MGP_CASTEiJ_G0034638.1 mouse_genomes_project X 25282148 25321562 + Xiap protein_coding processed_transcript MGP_CASTEiJ_T0096133.1 MGP_CASTEiJ_G0034638.1 mouse_genomes_project X 25282628 25326388 + MGP_CASTEiJ_P0096133 Xiap protein_coding protein_coding MGP_CASTEiJ_T0096134.1 MGP_CASTEiJ_G0034638.1 mouse_genomes_project X 25282988 25326388 + Xiap protein_coding processed_transcript MGP_CASTEiJ_T0096135.1 MGP_CASTEiJ_G0034638.1 mouse_genomes_project X 25285931 25326388 + MGP_CASTEiJ_P0096135 Xiap protein_coding protein_coding MGP_CASTEiJ_T0096136.1 MGP_CASTEiJ_G0034638.1 mouse_genomes_project X 25310455 25326388 + MGP_CASTEiJ_P0096136 Xiap protein_coding protein_coding MGP_CASTEiJ_T0097827.1 MGP_CASTEiJ_G0035128.1 mouse_genomes_project X 123558330 123608568 - MGP_CASTEiJ_P0097827 Lhfpl1 protein_coding protein_coding MGP_CASTEiJ_T0097828.1 MGP_CASTEiJ_G0035128.1 mouse_genomes_project X 123600180 123608707 - MGP_CASTEiJ_P0097828 Lhfpl1 protein_coding protein_coding MGP_CASTEiJ_T0015962.1 MGP_CASTEiJ_G0014125.1 mouse_genomes_project X 88574501 88575395 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016002.1 MGP_CASTEiJ_G0014165.1 mouse_genomes_project X 96504041 96505070 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096865.1 MGP_CASTEiJ_G0034827.1 mouse_genomes_project X 57240632 57246820 - MGP_CASTEiJ_P0096865 Rab39b protein_coding protein_coding MGP_CASTEiJ_T0016084.1 MGP_CASTEiJ_G0014247.1 mouse_genomes_project X 115354301 115354888 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097656.1 MGP_CASTEiJ_G0035078.1 mouse_genomes_project X 115225883 115291649 - MGP_CASTEiJ_P0097656 Slc25a53 protein_coding protein_coding MGP_CASTEiJ_T0097657.1 MGP_CASTEiJ_G0035078.1 mouse_genomes_project X 115225889 115244319 - MGP_CASTEiJ_P0097657 Slc25a53 protein_coding protein_coding MGP_CASTEiJ_T0097658.1 MGP_CASTEiJ_G0035078.1 mouse_genomes_project X 115225889 115291627 - MGP_CASTEiJ_P0097658 Slc25a53 protein_coding protein_coding MGP_CASTEiJ_T0097659.1 MGP_CASTEiJ_G0035078.1 mouse_genomes_project X 115227625 115244344 - MGP_CASTEiJ_P0097659 Slc25a53 protein_coding protein_coding MGP_CASTEiJ_T0097660.1 MGP_CASTEiJ_G0035078.1 mouse_genomes_project X 115227767 115244376 - MGP_CASTEiJ_P0097660 Slc25a53 protein_coding protein_coding MGP_CASTEiJ_T0097665.1 MGP_CASTEiJ_G0035078.1 mouse_genomes_project X 115252301 115283436 - Slc25a53 protein_coding retained_intron MGP_CASTEiJ_T0097666.1 MGP_CASTEiJ_G0035078.1 mouse_genomes_project X 115252340 115291651 - Slc25a53 protein_coding processed_transcript MGP_CASTEiJ_T0097667.1 MGP_CASTEiJ_G0035078.1 mouse_genomes_project X 115254061 115291381 - Slc25a53 protein_coding processed_transcript MGP_CASTEiJ_T0097668.1 MGP_CASTEiJ_G0035078.1 mouse_genomes_project X 115254062 115291621 - Slc25a53 protein_coding processed_transcript MGP_CASTEiJ_T0097669.1 MGP_CASTEiJ_G0035078.1 mouse_genomes_project X 115254830 115268837 - Slc25a53 protein_coding processed_transcript MGP_CASTEiJ_T0097670.1 MGP_CASTEiJ_G0035078.1 mouse_genomes_project X 115266339 115291648 - Slc25a53 protein_coding processed_transcript MGP_CASTEiJ_T0097671.1 MGP_CASTEiJ_G0035078.1 mouse_genomes_project X 115283358 115291373 - Slc25a53 protein_coding processed_transcript MGP_CASTEiJ_T0097672.1 MGP_CASTEiJ_G0035078.1 mouse_genomes_project X 115285150 115291651 - Slc25a53 protein_coding retained_intron MGP_CASTEiJ_T0097673.1 MGP_CASTEiJ_G0035078.1 mouse_genomes_project X 115285757 115291357 - Slc25a53 protein_coding processed_transcript MGP_CASTEiJ_T0096385.1 MGP_CASTEiJ_G0034723.1 mouse_genomes_project X 42584882 42586945 - MGP_CASTEiJ_P0096385 Sox3 protein_coding protein_coding MGP_CASTEiJ_T0015877.1 MGP_CASTEiJ_G0014040.1 mouse_genomes_project X 75869216 75869835 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015728.1 MGP_CASTEiJ_G0013891.1 mouse_genomes_project X 43079849 43080410 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016225.1 MGP_CASTEiJ_G0014388.1 mouse_genomes_project X 143521986 143522387 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096249.1 MGP_CASTEiJ_G0034670.1 mouse_genomes_project X 32948546 32949480 - MGP_CASTEiJ_P0096249 Olfr1323 protein_coding protein_coding MGP_CASTEiJ_T0096783.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56050204 56094840 + MGP_CASTEiJ_P0096783 Ikbkg protein_coding protein_coding MGP_CASTEiJ_T0096784.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56050205 56112486 + MGP_CASTEiJ_P0096784 Ikbkg protein_coding protein_coding MGP_CASTEiJ_T0096785.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56050205 56112486 + MGP_CASTEiJ_P0096785 Ikbkg protein_coding protein_coding MGP_CASTEiJ_T0096786.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56050241 56100637 + MGP_CASTEiJ_P0096786 Ikbkg protein_coding protein_coding MGP_CASTEiJ_T0096790.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56085173 56100699 + MGP_CASTEiJ_P0096790 Ikbkg protein_coding protein_coding MGP_CASTEiJ_T0096791.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56085243 56107666 + MGP_CASTEiJ_P0096791 Ikbkg protein_coding protein_coding MGP_CASTEiJ_T0096792.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56085251 56112486 + MGP_CASTEiJ_P0096792 Ikbkg protein_coding protein_coding MGP_CASTEiJ_T0096793.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56085251 56112562 + MGP_CASTEiJ_P0096793 Ikbkg protein_coding protein_coding MGP_CASTEiJ_T0096794.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56085272 56108027 + MGP_CASTEiJ_P0096794 Ikbkg protein_coding protein_coding MGP_CASTEiJ_T0096795.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56085277 56093510 + MGP_CASTEiJ_P0096795 Ikbkg protein_coding protein_coding MGP_CASTEiJ_T0096797.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56088542 56097999 + MGP_CASTEiJ_P0096797 Ikbkg protein_coding protein_coding MGP_CASTEiJ_T0096798.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56089921 56104115 + MGP_CASTEiJ_P0096798 Ikbkg protein_coding protein_coding MGP_CASTEiJ_T0096799.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56089955 56112486 + MGP_CASTEiJ_P0096799 Ikbkg protein_coding protein_coding MGP_CASTEiJ_T0096800.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56090311 56109195 + MGP_CASTEiJ_P0096800 Ikbkg protein_coding protein_coding MGP_CASTEiJ_T0096801.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56090344 56110430 + MGP_CASTEiJ_P0096801 Ikbkg protein_coding protein_coding MGP_CASTEiJ_T0096802.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56090362 56093997 + Ikbkg protein_coding retained_intron MGP_CASTEiJ_T0096803.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56090403 56104612 + MGP_CASTEiJ_P0096803 Ikbkg protein_coding protein_coding MGP_CASTEiJ_T0096804.1 MGP_CASTEiJ_G0034809.1 mouse_genomes_project X 56099719 56107148 + Ikbkg protein_coding processed_transcript MGP_CASTEiJ_T0016228.1 MGP_CASTEiJ_G0014391.1 mouse_genomes_project X 143814725 143815551 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097600.1 MGP_CASTEiJ_G0035053.1 mouse_genomes_project X 113965960 113975023 - MGP_CASTEiJ_P0097600 protein_coding protein_coding MGP_CASTEiJ_T0097601.1 MGP_CASTEiJ_G0035053.1 mouse_genomes_project X 113965960 113970153 - MGP_CASTEiJ_P0097601 protein_coding protein_coding MGP_CASTEiJ_T0096314.1 MGP_CASTEiJ_G0034704.1 mouse_genomes_project X 38332871 38358180 + MGP_CASTEiJ_P0096314 Slc9a6 protein_coding protein_coding MGP_CASTEiJ_T0096315.1 MGP_CASTEiJ_G0034704.1 mouse_genomes_project X 38332889 38387516 + MGP_CASTEiJ_P0096315 Slc9a6 protein_coding protein_coding MGP_CASTEiJ_T0096316.1 MGP_CASTEiJ_G0034704.1 mouse_genomes_project X 38332931 38387127 + MGP_CASTEiJ_P0096316 Slc9a6 protein_coding protein_coding MGP_CASTEiJ_T0096317.1 MGP_CASTEiJ_G0034704.1 mouse_genomes_project X 38333048 38384866 + MGP_CASTEiJ_P0096317 Slc9a6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096318.1 MGP_CASTEiJ_G0034704.1 mouse_genomes_project X 38381538 38387115 + Slc9a6 protein_coding retained_intron MGP_CASTEiJ_T0096047.1 MGP_CASTEiJ_G0034607.1 mouse_genomes_project X 20462876 20464450 + MGP_CASTEiJ_P0096047 Sowahd protein_coding protein_coding MGP_CASTEiJ_T0010840.1 MGP_CASTEiJ_G0009028.1 mouse_genomes_project X 48406994 48407070 - Mir883a miRNA miRNA MGP_CASTEiJ_T0102637.1 MGP_CASTEiJ_G0039361.1 mouse_genomes_project X 67728153 67729176 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0096875.1 MGP_CASTEiJ_G0034832.1 mouse_genomes_project X 58051514 58062787 + MGP_CASTEiJ_P0096875 protein_coding protein_coding MGP_CASTEiJ_T0095903.1 MGP_CASTEiJ_G0034562.1 mouse_genomes_project X 12094173 12108789 - Fundc1 protein_coding processed_transcript MGP_CASTEiJ_T0095904.1 MGP_CASTEiJ_G0034562.1 mouse_genomes_project X 12094173 12109413 - MGP_CASTEiJ_P0095904 Fundc1 protein_coding protein_coding MGP_CASTEiJ_T0095905.1 MGP_CASTEiJ_G0034562.1 mouse_genomes_project X 12094209 12109462 - MGP_CASTEiJ_P0095905 Fundc1 protein_coding protein_coding MGP_CASTEiJ_T0096079.1 MGP_CASTEiJ_G0034626.1 mouse_genomes_project X 21519629 21574082 - MGP_CASTEiJ_P0096079 Tmem255a protein_coding protein_coding MGP_CASTEiJ_T0096080.1 MGP_CASTEiJ_G0034626.1 mouse_genomes_project X 21520362 21574092 - Tmem255a protein_coding retained_intron MGP_CASTEiJ_T0096081.1 MGP_CASTEiJ_G0034626.1 mouse_genomes_project X 21520362 21574092 - MGP_CASTEiJ_P0096081 Tmem255a protein_coding protein_coding MGP_CASTEiJ_T0096082.1 MGP_CASTEiJ_G0034626.1 mouse_genomes_project X 21520362 21574092 - MGP_CASTEiJ_P0096082 Tmem255a protein_coding protein_coding MGP_CASTEiJ_T0096083.1 MGP_CASTEiJ_G0034626.1 mouse_genomes_project X 21535888 21574054 - Tmem255a protein_coding processed_transcript MGP_CASTEiJ_T0015752.1 MGP_CASTEiJ_G0013915.1 mouse_genomes_project X 47680629 47680891 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016160.1 MGP_CASTEiJ_G0014323.1 mouse_genomes_project X 129120681 129121396 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011439.1 MGP_CASTEiJ_G0009627.1 mouse_genomes_project X 85016600 85016805 + Gm27321 misc_RNA misc_RNA MGP_CASTEiJ_T0016083.1 MGP_CASTEiJ_G0014246.1 mouse_genomes_project X 115249323 115249619 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010838.1 MGP_CASTEiJ_G0009026.1 mouse_genomes_project X 48403952 48404029 - Mir743b miRNA miRNA MGP_CASTEiJ_T0102614.1 MGP_CASTEiJ_G0039338.1 mouse_genomes_project X 19169306 19187958 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015678.1 MGP_CASTEiJ_G0013841.1 mouse_genomes_project X 30607246 30610954 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097860.1 MGP_CASTEiJ_G0035134.1 mouse_genomes_project X 127928541 127954481 + MGP_CASTEiJ_P0097860 Alas2 protein_coding protein_coding MGP_CASTEiJ_T0097861.1 MGP_CASTEiJ_G0035134.1 mouse_genomes_project X 127928625 127954465 + MGP_CASTEiJ_P0097861 Alas2 protein_coding protein_coding MGP_CASTEiJ_T0097862.1 MGP_CASTEiJ_G0035134.1 mouse_genomes_project X 127935233 127939009 + Alas2 protein_coding retained_intron MGP_CASTEiJ_T0097863.1 MGP_CASTEiJ_G0035134.1 mouse_genomes_project X 127950255 127954465 + Alas2 protein_coding processed_transcript MGP_CASTEiJ_T0015971.1 MGP_CASTEiJ_G0014134.1 mouse_genomes_project X 90697823 90701222 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017883.1 MGP_CASTEiJ_G0015097.1 mouse_genomes_project X 57336289 57338989 - processed_transcript processed_transcript MGP_CASTEiJ_T0017882.1 MGP_CASTEiJ_G0015096.1 mouse_genomes_project X 55390075 55393848 + Gm14817 processed_transcript processed_transcript MGP_CASTEiJ_T0095893.1 MGP_CASTEiJ_G0034556.1 mouse_genomes_project X 11057060 11057881 + MGP_CASTEiJ_P0095893 Cypt1 protein_coding protein_coding MGP_CASTEiJ_T0095894.1 MGP_CASTEiJ_G0034556.1 mouse_genomes_project X 11057063 11057880 + MGP_CASTEiJ_P0095894 Cypt1 protein_coding protein_coding MGP_CASTEiJ_T0096423.1 MGP_CASTEiJ_G0034740.1 mouse_genomes_project X 51493477 51494185 + MGP_CASTEiJ_P0096423 protein_coding protein_coding MGP_CASTEiJ_T0010873.1 MGP_CASTEiJ_G0009061.1 mouse_genomes_project X 83264375 83264479 - Gm27843 miRNA miRNA MGP_CASTEiJ_T0015703.1 MGP_CASTEiJ_G0013866.1 mouse_genomes_project X 36615138 36615432 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010863.1 MGP_CASTEiJ_G0009051.1 mouse_genomes_project X 55639706 55639794 - Mir718 miRNA miRNA MGP_CASTEiJ_T0097591.1 MGP_CASTEiJ_G0035050.1 mouse_genomes_project X 113822121 113831586 - MGP_CASTEiJ_P0097591 Nxf7 protein_coding protein_coding MGP_CASTEiJ_T0097592.1 MGP_CASTEiJ_G0035050.1 mouse_genomes_project X 113822121 113841526 - MGP_CASTEiJ_P0097592 Nxf7 protein_coding protein_coding MGP_CASTEiJ_T0097593.1 MGP_CASTEiJ_G0035050.1 mouse_genomes_project X 113822310 113836403 - MGP_CASTEiJ_P0097593 Nxf7 protein_coding protein_coding MGP_CASTEiJ_T0097594.1 MGP_CASTEiJ_G0035050.1 mouse_genomes_project X 113826888 113828642 - Nxf7 protein_coding retained_intron MGP_CASTEiJ_T0097595.1 MGP_CASTEiJ_G0035050.1 mouse_genomes_project X 113830953 113841507 - MGP_CASTEiJ_P0097595 Nxf7 protein_coding protein_coding MGP_CASTEiJ_T0097596.1 MGP_CASTEiJ_G0035050.1 mouse_genomes_project X 113831136 113839457 - MGP_CASTEiJ_P0097596 Nxf7 protein_coding protein_coding MGP_CASTEiJ_T0096067.1 MGP_CASTEiJ_G0034620.1 mouse_genomes_project X 21309608 21341416 - protein_coding transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0096068.1 MGP_CASTEiJ_G0034620.1 mouse_genomes_project X 21309691 21339441 - protein_coding processed_transcript MGP_CASTEiJ_T0098204.1 MGP_CASTEiJ_G0035212.1 mouse_genomes_project X 141690023 141780825 + MGP_CASTEiJ_P0098204 Pir protein_coding protein_coding MGP_CASTEiJ_T0098205.1 MGP_CASTEiJ_G0035212.1 mouse_genomes_project X 141690083 141784750 + MGP_CASTEiJ_P0098205 Pir protein_coding protein_coding MGP_CASTEiJ_T0098206.1 MGP_CASTEiJ_G0035212.1 mouse_genomes_project X 141690163 141692554 + Pir protein_coding retained_intron MGP_CASTEiJ_T0098207.1 MGP_CASTEiJ_G0035212.1 mouse_genomes_project X 141690199 141762907 + Pir protein_coding retained_intron MGP_CASTEiJ_T0098208.1 MGP_CASTEiJ_G0035212.1 mouse_genomes_project X 141690225 141732236 + Pir protein_coding processed_transcript MGP_CASTEiJ_T0097167.1 MGP_CASTEiJ_G0034920.1 mouse_genomes_project X 82474480 82479324 - MGP_CASTEiJ_P0097167 Il2rg protein_coding protein_coding MGP_CASTEiJ_T0097168.1 MGP_CASTEiJ_G0034920.1 mouse_genomes_project X 82475040 82478503 - MGP_CASTEiJ_P0097168 Il2rg protein_coding protein_coding MGP_CASTEiJ_T0097169.1 MGP_CASTEiJ_G0034920.1 mouse_genomes_project X 82477734 82479259 - Il2rg protein_coding retained_intron MGP_CASTEiJ_T0097170.1 MGP_CASTEiJ_G0034920.1 mouse_genomes_project X 82478264 82479227 - Il2rg protein_coding processed_transcript MGP_CASTEiJ_T0015692.1 MGP_CASTEiJ_G0013855.1 mouse_genomes_project X 34115027 34115425 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097477.1 MGP_CASTEiJ_G0035015.1 mouse_genomes_project X 105582003 105583609 + MGP_CASTEiJ_P0097477 4921511C20Rik protein_coding protein_coding MGP_CASTEiJ_T0096240.1 MGP_CASTEiJ_G0034666.1 mouse_genomes_project X 32646484 32647444 + MGP_CASTEiJ_P0096240 Olfr1320 protein_coding protein_coding MGP_CASTEiJ_T0016231.1 MGP_CASTEiJ_G0014394.1 mouse_genomes_project X 144386891 144387426 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015739.1 MGP_CASTEiJ_G0013902.1 mouse_genomes_project X 44325187 44325669 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015868.1 MGP_CASTEiJ_G0014031.1 mouse_genomes_project X 75038038 75038309 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098017.1 MGP_CASTEiJ_G0035168.1 mouse_genomes_project X 132597581 132601175 - MGP_CASTEiJ_P0098017 Sat1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098018.1 MGP_CASTEiJ_G0035168.1 mouse_genomes_project X 132597581 132601175 - MGP_CASTEiJ_P0098018 Sat1 protein_coding protein_coding MGP_CASTEiJ_T0098019.1 MGP_CASTEiJ_G0035168.1 mouse_genomes_project X 132597756 132601058 - Sat1 protein_coding retained_intron MGP_CASTEiJ_T0098020.1 MGP_CASTEiJ_G0035168.1 mouse_genomes_project X 132597756 132598510 - Sat1 protein_coding retained_intron MGP_CASTEiJ_T0098021.1 MGP_CASTEiJ_G0035168.1 mouse_genomes_project X 132597756 132599629 - Sat1 protein_coding retained_intron MGP_CASTEiJ_T0098022.1 MGP_CASTEiJ_G0035168.1 mouse_genomes_project X 132597765 132601071 - MGP_CASTEiJ_P0098022 Sat1 protein_coding protein_coding MGP_CASTEiJ_T0098023.1 MGP_CASTEiJ_G0035168.1 mouse_genomes_project X 132600180 132601053 - Sat1 protein_coding retained_intron MGP_CASTEiJ_T0095673.1 MGP_CASTEiJ_G0034504.1 mouse_genomes_project X 2281020 2283388 + MGP_CASTEiJ_P0095673 Praf2 protein_coding protein_coding MGP_CASTEiJ_T0095975.1 MGP_CASTEiJ_G0034581.1 mouse_genomes_project X 15359247 15379505 - Uxt protein_coding processed_transcript MGP_CASTEiJ_T0095976.1 MGP_CASTEiJ_G0034581.1 mouse_genomes_project X 15369179 15379531 - MGP_CASTEiJ_P0095976 Uxt protein_coding protein_coding MGP_CASTEiJ_T0095977.1 MGP_CASTEiJ_G0034581.1 mouse_genomes_project X 15369448 15379429 - Uxt protein_coding retained_intron MGP_CASTEiJ_T0095978.1 MGP_CASTEiJ_G0034581.1 mouse_genomes_project X 15369454 15379514 - Uxt protein_coding processed_transcript MGP_CASTEiJ_T0095979.1 MGP_CASTEiJ_G0034581.1 mouse_genomes_project X 15376575 15379500 - Uxt protein_coding retained_intron MGP_CASTEiJ_T0095980.1 MGP_CASTEiJ_G0034581.1 mouse_genomes_project X 15378931 15379488 - Uxt protein_coding processed_transcript MGP_CASTEiJ_T0011451.1 MGP_CASTEiJ_G0009639.1 mouse_genomes_project X 139666827 139667092 - Gm23867 misc_RNA misc_RNA MGP_CASTEiJ_T0016216.1 MGP_CASTEiJ_G0014379.1 mouse_genomes_project X 140585636 140586121 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010839.1 MGP_CASTEiJ_G0009027.1 mouse_genomes_project X 48406611 48406676 - Mir742 miRNA miRNA MGP_CASTEiJ_T0015832.1 MGP_CASTEiJ_G0013995.1 mouse_genomes_project X 67699432 67701063 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015845.1 MGP_CASTEiJ_G0014008.1 mouse_genomes_project X 70458020 70458979 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016022.1 MGP_CASTEiJ_G0014185.1 mouse_genomes_project X 101012637 101013490 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100189.1 MGP_CASTEiJ_G0037102.1 mouse_genomes_project X 31329475 31329576 + Gm22612 snRNA snRNA MGP_CASTEiJ_T0096855.1 MGP_CASTEiJ_G0034825.1 mouse_genomes_project X 57090681 57125337 + MGP_CASTEiJ_P0096855 Brcc3 protein_coding protein_coding MGP_CASTEiJ_T0096856.1 MGP_CASTEiJ_G0034825.1 mouse_genomes_project X 57090750 57123315 + MGP_CASTEiJ_P0096856 Brcc3 protein_coding protein_coding MGP_CASTEiJ_T0096857.1 MGP_CASTEiJ_G0034825.1 mouse_genomes_project X 57090753 57122067 + Brcc3 protein_coding retained_intron MGP_CASTEiJ_T0096858.1 MGP_CASTEiJ_G0034825.1 mouse_genomes_project X 57090763 57123038 + MGP_CASTEiJ_P0096858 Brcc3 protein_coding protein_coding MGP_CASTEiJ_T0096859.1 MGP_CASTEiJ_G0034825.1 mouse_genomes_project X 57090769 57111592 + MGP_CASTEiJ_P0096859 Brcc3 protein_coding protein_coding MGP_CASTEiJ_T0096860.1 MGP_CASTEiJ_G0034825.1 mouse_genomes_project X 57091360 57109099 + MGP_CASTEiJ_P0096860 Brcc3 protein_coding protein_coding MGP_CASTEiJ_T0096861.1 MGP_CASTEiJ_G0034825.1 mouse_genomes_project X 57107600 57122558 + Brcc3 protein_coding retained_intron MGP_CASTEiJ_T0005428.1 MGP_CASTEiJ_G0004584.1 mouse_genomes_project X 2736243 2738774 + Rbm3os antisense antisense MGP_CASTEiJ_T0005429.1 MGP_CASTEiJ_G0004584.1 mouse_genomes_project X 2736726 2738486 + Rbm3os antisense antisense MGP_CASTEiJ_T0015799.1 MGP_CASTEiJ_G0013962.1 mouse_genomes_project X 59256999 59257599 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015631.1 MGP_CASTEiJ_G0013794.1 mouse_genomes_project X 19593469 19594075 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015673.1 MGP_CASTEiJ_G0013836.1 mouse_genomes_project X 29163352 29164885 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016120.1 MGP_CASTEiJ_G0014283.1 mouse_genomes_project X 120750524 120750734 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015808.1 MGP_CASTEiJ_G0013971.1 mouse_genomes_project X 61354477 61355397 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016133.1 MGP_CASTEiJ_G0014296.1 mouse_genomes_project X 122813211 122814614 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015847.1 MGP_CASTEiJ_G0014010.1 mouse_genomes_project X 70773190 70773529 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017884.1 MGP_CASTEiJ_G0015098.1 mouse_genomes_project X 81935780 81939609 - Gm14866 processed_transcript processed_transcript MGP_CASTEiJ_T0016201.1 MGP_CASTEiJ_G0014364.1 mouse_genomes_project X 137365967 137366401 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097207.1 MGP_CASTEiJ_G0034925.1 mouse_genomes_project X 82650599 82660692 + MGP_CASTEiJ_P0097207 protein_coding protein_coding MGP_CASTEiJ_T0097208.1 MGP_CASTEiJ_G0034925.1 mouse_genomes_project X 82650963 82672591 + MGP_CASTEiJ_P0097208 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097209.1 MGP_CASTEiJ_G0034925.1 mouse_genomes_project X 82651012 82665856 + protein_coding retained_intron MGP_CASTEiJ_T0097210.1 MGP_CASTEiJ_G0034925.1 mouse_genomes_project X 82666012 82667742 + protein_coding retained_intron MGP_CASTEiJ_T0097211.1 MGP_CASTEiJ_G0034925.1 mouse_genomes_project X 82666727 82671134 + protein_coding retained_intron MGP_CASTEiJ_T0097212.1 MGP_CASTEiJ_G0034925.1 mouse_genomes_project X 82668139 82671129 + protein_coding processed_transcript MGP_CASTEiJ_T0097213.1 MGP_CASTEiJ_G0034925.1 mouse_genomes_project X 82669228 82671134 + protein_coding retained_intron MGP_CASTEiJ_T0016217.1 MGP_CASTEiJ_G0014380.1 mouse_genomes_project X 140654957 140655423 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016211.1 MGP_CASTEiJ_G0014374.1 mouse_genomes_project X 140039136 140039592 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097647.1 MGP_CASTEiJ_G0035072.1 mouse_genomes_project X 115069519 115086540 + MGP_CASTEiJ_P0097647 Plp1 protein_coding protein_coding MGP_CASTEiJ_T0097648.1 MGP_CASTEiJ_G0035072.1 mouse_genomes_project X 115069638 115084682 + MGP_CASTEiJ_P0097648 Plp1 protein_coding protein_coding MGP_CASTEiJ_T0097649.1 MGP_CASTEiJ_G0035072.1 mouse_genomes_project X 115077954 115079385 + Plp1 protein_coding retained_intron MGP_CASTEiJ_T0097650.1 MGP_CASTEiJ_G0035072.1 mouse_genomes_project X 115080043 115081580 + Plp1 protein_coding retained_intron MGP_CASTEiJ_T0096255.1 MGP_CASTEiJ_G0034673.1 mouse_genomes_project X 33767001 33816947 - MGP_CASTEiJ_P0096255 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096256.1 MGP_CASTEiJ_G0034673.1 mouse_genomes_project X 33767001 33816180 - MGP_CASTEiJ_P0096256 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0016147.1 MGP_CASTEiJ_G0014310.1 mouse_genomes_project X 124756425 124756907 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097617.1 MGP_CASTEiJ_G0035058.1 mouse_genomes_project X 114263835 114265363 + MGP_CASTEiJ_P0097617 protein_coding protein_coding MGP_CASTEiJ_T0097247.1 MGP_CASTEiJ_G0034935.1 mouse_genomes_project X 83462200 83466661 - MGP_CASTEiJ_P0097247 Rps4x protein_coding protein_coding MGP_CASTEiJ_T0097248.1 MGP_CASTEiJ_G0034935.1 mouse_genomes_project X 83464947 83466603 - Rps4x protein_coding retained_intron MGP_CASTEiJ_T0096190.1 MGP_CASTEiJ_G0034654.1 mouse_genomes_project X 31277054 31303040 + MGP_CASTEiJ_P0096190 Utp14a protein_coding protein_coding MGP_CASTEiJ_T0096191.1 MGP_CASTEiJ_G0034654.1 mouse_genomes_project X 31277089 31288568 + Utp14a protein_coding processed_transcript MGP_CASTEiJ_T0096192.1 MGP_CASTEiJ_G0034654.1 mouse_genomes_project X 31277110 31293658 + Utp14a protein_coding processed_transcript MGP_CASTEiJ_T0016172.1 MGP_CASTEiJ_G0014335.1 mouse_genomes_project X 132505147 132506154 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015736.1 MGP_CASTEiJ_G0013899.1 mouse_genomes_project X 43927683 43928785 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096115.1 MGP_CASTEiJ_G0034637.1 mouse_genomes_project X 25004158 25022228 - MGP_CASTEiJ_P0096115 protein_coding protein_coding MGP_CASTEiJ_T0096116.1 MGP_CASTEiJ_G0034637.1 mouse_genomes_project X 25006275 25022602 - MGP_CASTEiJ_P0096116 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096117.1 MGP_CASTEiJ_G0034637.1 mouse_genomes_project X 25006649 25015638 - MGP_CASTEiJ_P0096117 protein_coding protein_coding MGP_CASTEiJ_T0096118.1 MGP_CASTEiJ_G0034637.1 mouse_genomes_project X 25008515 25121009 - MGP_CASTEiJ_P0096118 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096119.1 MGP_CASTEiJ_G0034637.1 mouse_genomes_project X 25011444 25016126 - MGP_CASTEiJ_P0096119 protein_coding protein_coding MGP_CASTEiJ_T0096120.1 MGP_CASTEiJ_G0034637.1 mouse_genomes_project X 25011456 25015790 - MGP_CASTEiJ_P0096120 protein_coding protein_coding MGP_CASTEiJ_T0096121.1 MGP_CASTEiJ_G0034637.1 mouse_genomes_project X 25012628 25021697 - protein_coding processed_transcript MGP_CASTEiJ_T0096122.1 MGP_CASTEiJ_G0034637.1 mouse_genomes_project X 25022179 25070774 - protein_coding processed_transcript MGP_CASTEiJ_T0096123.1 MGP_CASTEiJ_G0034637.1 mouse_genomes_project X 25022575 25040476 - protein_coding retained_intron MGP_CASTEiJ_T0096124.1 MGP_CASTEiJ_G0034637.1 mouse_genomes_project X 25030735 25040618 - protein_coding retained_intron MGP_CASTEiJ_T0096125.1 MGP_CASTEiJ_G0034637.1 mouse_genomes_project X 25068324 25121039 - protein_coding retained_intron MGP_CASTEiJ_T0096126.1 MGP_CASTEiJ_G0034637.1 mouse_genomes_project X 25071944 25121024 - MGP_CASTEiJ_P0096126 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096127.1 MGP_CASTEiJ_G0034637.1 mouse_genomes_project X 25086298 25130920 - MGP_CASTEiJ_P0096127 protein_coding protein_coding MGP_CASTEiJ_T0096128.1 MGP_CASTEiJ_G0034637.1 mouse_genomes_project X 25086302 25106352 - MGP_CASTEiJ_P0096128 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096129.1 MGP_CASTEiJ_G0034637.1 mouse_genomes_project X 25091825 25107807 - protein_coding retained_intron MGP_CASTEiJ_T0015990.1 MGP_CASTEiJ_G0014153.1 mouse_genomes_project X 94107892 94111583 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005431.1 MGP_CASTEiJ_G0004586.1 mouse_genomes_project X 20213663 20216058 + Gm14549 antisense antisense MGP_CASTEiJ_T0010846.1 MGP_CASTEiJ_G0009034.1 mouse_genomes_project X 48427428 48427506 - Mir878 miRNA miRNA MGP_CASTEiJ_T0102658.1 MGP_CASTEiJ_G0039382.1 mouse_genomes_project X 137642296 137642589 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102649.1 MGP_CASTEiJ_G0039373.1 mouse_genomes_project X 113446425 113449788 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0097541.1 MGP_CASTEiJ_G0035034.1 mouse_genomes_project X 112669465 112673880 - MGP_CASTEiJ_P0097541 Timm8a1 protein_coding protein_coding MGP_CASTEiJ_T0096880.1 MGP_CASTEiJ_G0034836.1 mouse_genomes_project X 58276679 58285750 - MGP_CASTEiJ_P0096880 Cldn34d protein_coding protein_coding MGP_CASTEiJ_T0016238.1 MGP_CASTEiJ_G0014401.1 mouse_genomes_project X 146147198 146147598 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096106.1 MGP_CASTEiJ_G0034636.1 mouse_genomes_project X 24634744 24846916 + Gria3 protein_coding retained_intron MGP_CASTEiJ_T0096107.1 MGP_CASTEiJ_G0034636.1 mouse_genomes_project X 24634990 24910770 + MGP_CASTEiJ_P0096107 Gria3 protein_coding protein_coding MGP_CASTEiJ_T0096108.1 MGP_CASTEiJ_G0034636.1 mouse_genomes_project X 24635162 24912775 + MGP_CASTEiJ_P0096108 Gria3 protein_coding protein_coding MGP_CASTEiJ_T0096109.1 MGP_CASTEiJ_G0034636.1 mouse_genomes_project X 24635258 24910777 + Gria3 protein_coding retained_intron MGP_CASTEiJ_T0096110.1 MGP_CASTEiJ_G0034636.1 mouse_genomes_project X 24635296 24912772 + MGP_CASTEiJ_P0096110 Gria3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096111.1 MGP_CASTEiJ_G0034636.1 mouse_genomes_project X 24635342 24847371 + Gria3 protein_coding retained_intron MGP_CASTEiJ_T0096112.1 MGP_CASTEiJ_G0034636.1 mouse_genomes_project X 24635425 24906739 + MGP_CASTEiJ_P0096112 Gria3 protein_coding protein_coding MGP_CASTEiJ_T0096113.1 MGP_CASTEiJ_G0034636.1 mouse_genomes_project X 24636601 24711597 + MGP_CASTEiJ_P0096113 Gria3 protein_coding protein_coding MGP_CASTEiJ_T0096114.1 MGP_CASTEiJ_G0034636.1 mouse_genomes_project X 24844013 24855078 + Gria3 protein_coding retained_intron MGP_CASTEiJ_T0102625.1 MGP_CASTEiJ_G0039349.1 mouse_genomes_project X 47680633 47680897 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010883.1 MGP_CASTEiJ_G0009071.1 mouse_genomes_project X 87836595 87836705 + Mir6382 miRNA miRNA MGP_CASTEiJ_T0100210.1 MGP_CASTEiJ_G0037123.1 mouse_genomes_project X 87162112 87162295 + Gm26020 snRNA snRNA MGP_CASTEiJ_T0015590.1 MGP_CASTEiJ_G0013753.1 mouse_genomes_project X 8647390 8649612 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015602.1 MGP_CASTEiJ_G0013765.1 mouse_genomes_project X 12148269 12149106 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095854.1 MGP_CASTEiJ_G0034546.1 mouse_genomes_project X 7255838 7264593 + Atp6ap2 protein_coding retained_intron MGP_CASTEiJ_T0095855.1 MGP_CASTEiJ_G0034546.1 mouse_genomes_project X 7255838 7285435 + MGP_CASTEiJ_P0095855 Atp6ap2 protein_coding protein_coding MGP_CASTEiJ_T0095856.1 MGP_CASTEiJ_G0034546.1 mouse_genomes_project X 7255933 7285358 + MGP_CASTEiJ_P0095856 Atp6ap2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0098181.1 MGP_CASTEiJ_G0035205.1 mouse_genomes_project X 141302817 141332579 + MGP_CASTEiJ_P0098181 Ap1s2 protein_coding protein_coding MGP_CASTEiJ_T0098182.1 MGP_CASTEiJ_G0035205.1 mouse_genomes_project X 141302942 141332281 + MGP_CASTEiJ_P0098182 Ap1s2 protein_coding protein_coding MGP_CASTEiJ_T0098183.1 MGP_CASTEiJ_G0035205.1 mouse_genomes_project X 141302945 141328465 + MGP_CASTEiJ_P0098183 Ap1s2 protein_coding protein_coding MGP_CASTEiJ_T0098184.1 MGP_CASTEiJ_G0035205.1 mouse_genomes_project X 141305199 141332278 + MGP_CASTEiJ_P0098184 Ap1s2 protein_coding protein_coding MGP_CASTEiJ_T0097282.1 MGP_CASTEiJ_G0034948.1 mouse_genomes_project X 84803173 84865746 + MGP_CASTEiJ_P0097282 Gm26992 protein_coding protein_coding MGP_CASTEiJ_T0102642.1 MGP_CASTEiJ_G0039366.1 mouse_genomes_project X 76245469 76248436 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015938.1 MGP_CASTEiJ_G0014101.1 mouse_genomes_project X 84919387 84919612 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015750.1 MGP_CASTEiJ_G0013913.1 mouse_genomes_project X 47586221 47588349 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097801.1 MGP_CASTEiJ_G0035123.1 mouse_genomes_project X 122137196 122164732 - MGP_CASTEiJ_P0097801 Capn6 protein_coding protein_coding MGP_CASTEiJ_T0097802.1 MGP_CASTEiJ_G0035123.1 mouse_genomes_project X 122153450 122164650 - Capn6 protein_coding retained_intron MGP_CASTEiJ_T0016057.1 MGP_CASTEiJ_G0014220.1 mouse_genomes_project X 111186885 111187673 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015984.1 MGP_CASTEiJ_G0014147.1 mouse_genomes_project X 93855202 93855365 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016151.1 MGP_CASTEiJ_G0014314.1 mouse_genomes_project X 125181432 125183269 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015887.1 MGP_CASTEiJ_G0014050.1 mouse_genomes_project X 76594197 76596149 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095876.1 MGP_CASTEiJ_G0034552.1 mouse_genomes_project X 8224916 8506155 - MGP_CASTEiJ_P0095876 Cask protein_coding protein_coding MGP_CASTEiJ_T0095877.1 MGP_CASTEiJ_G0034552.1 mouse_genomes_project X 8224916 8568637 - MGP_CASTEiJ_P0095877 Cask protein_coding protein_coding MGP_CASTEiJ_T0095878.1 MGP_CASTEiJ_G0034552.1 mouse_genomes_project X 8224916 8568674 - MGP_CASTEiJ_P0095878 Cask protein_coding protein_coding MGP_CASTEiJ_T0095879.1 MGP_CASTEiJ_G0034552.1 mouse_genomes_project X 8229157 8568652 - MGP_CASTEiJ_P0095879 Cask protein_coding protein_coding MGP_CASTEiJ_T0095880.1 MGP_CASTEiJ_G0034552.1 mouse_genomes_project X 8229231 8568444 - MGP_CASTEiJ_P0095880 Cask protein_coding unknown_likely_coding MGP_CASTEiJ_T0095881.1 MGP_CASTEiJ_G0034552.1 mouse_genomes_project X 8229610 8234593 - MGP_CASTEiJ_P0095881 Cask protein_coding protein_coding MGP_CASTEiJ_T0095882.1 MGP_CASTEiJ_G0034552.1 mouse_genomes_project X 8229908 8245594 - MGP_CASTEiJ_P0095882 Cask protein_coding protein_coding MGP_CASTEiJ_T0095883.1 MGP_CASTEiJ_G0034552.1 mouse_genomes_project X 8241275 8267645 - MGP_CASTEiJ_P0095883 Cask protein_coding protein_coding MGP_CASTEiJ_T0095884.1 MGP_CASTEiJ_G0034552.1 mouse_genomes_project X 8263146 8568674 - Cask protein_coding retained_intron MGP_CASTEiJ_T0095885.1 MGP_CASTEiJ_G0034552.1 mouse_genomes_project X 8279569 8391730 - MGP_CASTEiJ_P0095885 Cask protein_coding protein_coding MGP_CASTEiJ_T0095886.1 MGP_CASTEiJ_G0034552.1 mouse_genomes_project X 8340396 8568184 - MGP_CASTEiJ_P0095886 Cask protein_coding protein_coding MGP_CASTEiJ_T0095890.1 MGP_CASTEiJ_G0034552.1 mouse_genomes_project X 8430119 8573451 - Cask protein_coding processed_transcript MGP_CASTEiJ_T0095891.1 MGP_CASTEiJ_G0034552.1 mouse_genomes_project X 8568185 8568831 - Cask protein_coding processed_transcript MGP_CASTEiJ_T0098001.1 MGP_CASTEiJ_G0035160.1 mouse_genomes_project X 130620970 130757975 + MGP_CASTEiJ_P0098001 Klf8 protein_coding protein_coding MGP_CASTEiJ_T0098002.1 MGP_CASTEiJ_G0035160.1 mouse_genomes_project X 130621252 130784295 + MGP_CASTEiJ_P0098002 Klf8 protein_coding protein_coding MGP_CASTEiJ_T0098003.1 MGP_CASTEiJ_G0035160.1 mouse_genomes_project X 130743868 130783960 + MGP_CASTEiJ_P0098003 Klf8 protein_coding protein_coding MGP_CASTEiJ_T0016218.1 MGP_CASTEiJ_G0014381.1 mouse_genomes_project X 140706620 140707089 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015892.1 MGP_CASTEiJ_G0014055.1 mouse_genomes_project X 77868962 77870670 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097602.1 MGP_CASTEiJ_G0035054.1 mouse_genomes_project X 113989649 114013329 + Gprasp1 protein_coding processed_transcript MGP_CASTEiJ_T0097604.1 MGP_CASTEiJ_G0035054.1 mouse_genomes_project X 113989649 114058723 + MGP_CASTEiJ_P0097604 Gprasp1 protein_coding protein_coding MGP_CASTEiJ_T0097605.1 MGP_CASTEiJ_G0035054.1 mouse_genomes_project X 113989649 114058723 + MGP_CASTEiJ_P0097605 Gprasp1 protein_coding protein_coding MGP_CASTEiJ_T0097606.1 MGP_CASTEiJ_G0035054.1 mouse_genomes_project X 113989649 114058723 + MGP_CASTEiJ_P0097606 Gprasp1 protein_coding protein_coding MGP_CASTEiJ_T0097607.1 MGP_CASTEiJ_G0035054.1 mouse_genomes_project X 113989651 114032835 + Gprasp1 protein_coding processed_transcript MGP_CASTEiJ_T0097612.1 MGP_CASTEiJ_G0035054.1 mouse_genomes_project X 114052873 114058715 + MGP_CASTEiJ_P0097612 Gprasp1 protein_coding protein_coding MGP_CASTEiJ_T0095739.1 MGP_CASTEiJ_G0034518.1 mouse_genomes_project X 2495619 2516910 - MGP_CASTEiJ_P0095739 Hdac6 protein_coding protein_coding MGP_CASTEiJ_T0095740.1 MGP_CASTEiJ_G0034518.1 mouse_genomes_project X 2495621 2516910 - MGP_CASTEiJ_P0095740 Hdac6 protein_coding protein_coding MGP_CASTEiJ_T0095741.1 MGP_CASTEiJ_G0034518.1 mouse_genomes_project X 2495623 2516859 - Hdac6 protein_coding retained_intron MGP_CASTEiJ_T0095742.1 MGP_CASTEiJ_G0034518.1 mouse_genomes_project X 2496858 2516910 - MGP_CASTEiJ_P0095742 Hdac6 protein_coding protein_coding MGP_CASTEiJ_T0095743.1 MGP_CASTEiJ_G0034518.1 mouse_genomes_project X 2497054 2499974 - Hdac6 protein_coding retained_intron MGP_CASTEiJ_T0095744.1 MGP_CASTEiJ_G0034518.1 mouse_genomes_project X 2502975 2507102 - Hdac6 protein_coding retained_intron MGP_CASTEiJ_T0095745.1 MGP_CASTEiJ_G0034518.1 mouse_genomes_project X 2503082 2508391 - Hdac6 protein_coding retained_intron MGP_CASTEiJ_T0095746.1 MGP_CASTEiJ_G0034518.1 mouse_genomes_project X 2512430 2516179 - Hdac6 protein_coding retained_intron MGP_CASTEiJ_T0095747.1 MGP_CASTEiJ_G0034518.1 mouse_genomes_project X 2512454 2516574 - MGP_CASTEiJ_P0095747 Hdac6 protein_coding protein_coding MGP_CASTEiJ_T0095748.1 MGP_CASTEiJ_G0034518.1 mouse_genomes_project X 2516012 2516788 - MGP_CASTEiJ_P0095748 Hdac6 protein_coding protein_coding MGP_CASTEiJ_T0015709.1 MGP_CASTEiJ_G0013872.1 mouse_genomes_project X 39477987 39478976 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015671.1 MGP_CASTEiJ_G0013834.1 mouse_genomes_project X 28615926 28618376 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096402.1 MGP_CASTEiJ_G0034735.1 mouse_genomes_project X 50193662 50195944 + MGP_CASTEiJ_P0096402 protein_coding protein_coding MGP_CASTEiJ_T0005457.1 MGP_CASTEiJ_G0004609.1 mouse_genomes_project X 84759679 84760899 - Gm26952 antisense antisense MGP_CASTEiJ_T0097553.1 MGP_CASTEiJ_G0035037.1 mouse_genomes_project X 112725483 112738430 - MGP_CASTEiJ_P0097553 Gla protein_coding protein_coding MGP_CASTEiJ_T0097554.1 MGP_CASTEiJ_G0035037.1 mouse_genomes_project X 112732595 112737597 - MGP_CASTEiJ_P0097554 Gla protein_coding protein_coding MGP_CASTEiJ_T0098220.1 MGP_CASTEiJ_G0035216.1 mouse_genomes_project X 141894468 141929274 + MGP_CASTEiJ_P0098220 Asb9 protein_coding protein_coding MGP_CASTEiJ_T0096495.1 MGP_CASTEiJ_G0034763.1 mouse_genomes_project X 54493876 54538735 + MGP_CASTEiJ_P0096495 Zfp185 protein_coding protein_coding MGP_CASTEiJ_T0096496.1 MGP_CASTEiJ_G0034763.1 mouse_genomes_project X 54493897 54538735 + MGP_CASTEiJ_P0096496 Zfp185 protein_coding protein_coding MGP_CASTEiJ_T0096497.1 MGP_CASTEiJ_G0034763.1 mouse_genomes_project X 54494790 54504169 + MGP_CASTEiJ_P0096497 Zfp185 protein_coding protein_coding MGP_CASTEiJ_T0100235.1 MGP_CASTEiJ_G0037148.1 mouse_genomes_project X 134396573 134396737 + Gm22666 snRNA snRNA MGP_CASTEiJ_T0016149.1 MGP_CASTEiJ_G0014312.1 mouse_genomes_project X 124899969 124900446 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096197.1 MGP_CASTEiJ_G0034656.1 mouse_genomes_project X 31441316 31487007 - MGP_CASTEiJ_P0096197 Elf4 protein_coding protein_coding MGP_CASTEiJ_T0096198.1 MGP_CASTEiJ_G0034656.1 mouse_genomes_project X 31441319 31495967 - MGP_CASTEiJ_P0096198 Elf4 protein_coding protein_coding MGP_CASTEiJ_T0096199.1 MGP_CASTEiJ_G0034656.1 mouse_genomes_project X 31446994 31495967 - MGP_CASTEiJ_P0096199 Elf4 protein_coding protein_coding MGP_CASTEiJ_T0096484.1 MGP_CASTEiJ_G0034758.1 mouse_genomes_project X 53930390 53935343 - MGP_CASTEiJ_P0096484 Magea10 protein_coding protein_coding MGP_CASTEiJ_T0096070.1 MGP_CASTEiJ_G0034621.1 mouse_genomes_project X 21367433 21372657 + MGP_CASTEiJ_P0096070 Rhox10 protein_coding protein_coding MGP_CASTEiJ_T0097841.1 MGP_CASTEiJ_G0035132.1 mouse_genomes_project X 125732624 125778726 - MGP_CASTEiJ_P0097841 Lrch2 protein_coding protein_coding MGP_CASTEiJ_T0097842.1 MGP_CASTEiJ_G0035132.1 mouse_genomes_project X 125732629 125830618 - MGP_CASTEiJ_P0097842 Lrch2 protein_coding protein_coding MGP_CASTEiJ_T0097843.1 MGP_CASTEiJ_G0035132.1 mouse_genomes_project X 125732636 125764490 - Lrch2 protein_coding retained_intron MGP_CASTEiJ_T0097844.1 MGP_CASTEiJ_G0035132.1 mouse_genomes_project X 125732636 125830587 - MGP_CASTEiJ_P0097844 Lrch2 protein_coding protein_coding MGP_CASTEiJ_T0097845.1 MGP_CASTEiJ_G0035132.1 mouse_genomes_project X 125735024 125832510 - MGP_CASTEiJ_P0097845 Lrch2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097846.1 MGP_CASTEiJ_G0035132.1 mouse_genomes_project X 125736431 125786356 - MGP_CASTEiJ_P0097846 Lrch2 protein_coding protein_coding MGP_CASTEiJ_T0097847.1 MGP_CASTEiJ_G0035132.1 mouse_genomes_project X 125748535 125769824 - Lrch2 protein_coding processed_transcript MGP_CASTEiJ_T0015609.1 MGP_CASTEiJ_G0013772.1 mouse_genomes_project X 14189486 14189883 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100237.1 MGP_CASTEiJ_G0037150.1 mouse_genomes_project X 140221615 140221722 - snRNA snRNA MGP_CASTEiJ_T0016129.1 MGP_CASTEiJ_G0014292.1 mouse_genomes_project X 122569004 122569160 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010844.1 MGP_CASTEiJ_G0009032.1 mouse_genomes_project X 48425141 48425216 - Mir463 miRNA miRNA MGP_CASTEiJ_T0098270.1 MGP_CASTEiJ_G0035229.1 mouse_genomes_project X 144660949 144687226 - MGP_CASTEiJ_P0098270 Tlr7 protein_coding protein_coding MGP_CASTEiJ_T0098271.1 MGP_CASTEiJ_G0035229.1 mouse_genomes_project X 144660951 144687256 - MGP_CASTEiJ_P0098271 Tlr7 protein_coding protein_coding MGP_CASTEiJ_T0098272.1 MGP_CASTEiJ_G0035229.1 mouse_genomes_project X 144661234 144687195 - MGP_CASTEiJ_P0098272 Tlr7 protein_coding protein_coding MGP_CASTEiJ_T0098273.1 MGP_CASTEiJ_G0035229.1 mouse_genomes_project X 144664362 144687189 - MGP_CASTEiJ_P0098273 Tlr7 protein_coding protein_coding MGP_CASTEiJ_T0098274.1 MGP_CASTEiJ_G0035229.1 mouse_genomes_project X 144664376 144687208 - MGP_CASTEiJ_P0098274 Tlr7 protein_coding protein_coding MGP_CASTEiJ_T0098275.1 MGP_CASTEiJ_G0035229.1 mouse_genomes_project X 144674348 144687141 - Tlr7 protein_coding processed_transcript MGP_CASTEiJ_T0096955.1 MGP_CASTEiJ_G0034865.1 mouse_genomes_project X 73589553 74057753 - MGP_CASTEiJ_P0096955 Mageb18 protein_coding protein_coding MGP_CASTEiJ_T0096956.1 MGP_CASTEiJ_G0034865.1 mouse_genomes_project X 73589874 73591444 - MGP_CASTEiJ_P0096956 Mageb18 protein_coding protein_coding MGP_CASTEiJ_T0101696.1 MGP_CASTEiJ_G0038518.1 mouse_genomes_project X 106555718 106556360 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0015774.1 MGP_CASTEiJ_G0013937.1 mouse_genomes_project X 52523061 52523690 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095696.1 MGP_CASTEiJ_G0034507.1 mouse_genomes_project X 2349741 2379173 + MGP_CASTEiJ_P0095696 Gripap1 protein_coding protein_coding MGP_CASTEiJ_T0095697.1 MGP_CASTEiJ_G0034507.1 mouse_genomes_project X 2349970 2372107 + MGP_CASTEiJ_P0095697 Gripap1 protein_coding protein_coding MGP_CASTEiJ_T0095698.1 MGP_CASTEiJ_G0034507.1 mouse_genomes_project X 2349971 2379169 + MGP_CASTEiJ_P0095698 Gripap1 protein_coding protein_coding MGP_CASTEiJ_T0095699.1 MGP_CASTEiJ_G0034507.1 mouse_genomes_project X 2349982 2354529 + Gripap1 protein_coding retained_intron MGP_CASTEiJ_T0095700.1 MGP_CASTEiJ_G0034507.1 mouse_genomes_project X 2349984 2379169 + MGP_CASTEiJ_P0095700 Gripap1 protein_coding protein_coding MGP_CASTEiJ_T0095701.1 MGP_CASTEiJ_G0034507.1 mouse_genomes_project X 2349988 2372107 + MGP_CASTEiJ_P0095701 Gripap1 protein_coding protein_coding MGP_CASTEiJ_T0095702.1 MGP_CASTEiJ_G0034507.1 mouse_genomes_project X 2349994 2378562 + Gripap1 protein_coding processed_transcript MGP_CASTEiJ_T0095703.1 MGP_CASTEiJ_G0034507.1 mouse_genomes_project X 2358234 2370480 + Gripap1 protein_coding retained_intron MGP_CASTEiJ_T0095704.1 MGP_CASTEiJ_G0034507.1 mouse_genomes_project X 2369893 2370442 + Gripap1 protein_coding processed_transcript MGP_CASTEiJ_T0095705.1 MGP_CASTEiJ_G0034507.1 mouse_genomes_project X 2377524 2379169 + Gripap1 protein_coding retained_intron MGP_CASTEiJ_T0005455.1 MGP_CASTEiJ_G0004607.1 mouse_genomes_project X 80661504 80663246 + Gm14808 antisense antisense MGP_CASTEiJ_T0097982.1 MGP_CASTEiJ_G0035152.1 mouse_genomes_project X 129743744 129773053 - MGP_CASTEiJ_P0097982 Gpr173 protein_coding protein_coding MGP_CASTEiJ_T0097983.1 MGP_CASTEiJ_G0035152.1 mouse_genomes_project X 129771364 129773053 - Gpr173 protein_coding processed_transcript MGP_CASTEiJ_T0015751.1 MGP_CASTEiJ_G0013914.1 mouse_genomes_project X 47680623 47680929 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095802.1 MGP_CASTEiJ_G0034529.1 mouse_genomes_project X 2866767 2868867 + MGP_CASTEiJ_P0095802 Slc38a5 protein_coding protein_coding MGP_CASTEiJ_T0095803.1 MGP_CASTEiJ_G0034529.1 mouse_genomes_project X 2866785 2877741 + MGP_CASTEiJ_P0095803 Slc38a5 protein_coding protein_coding MGP_CASTEiJ_T0095804.1 MGP_CASTEiJ_G0034529.1 mouse_genomes_project X 2867351 2877741 + MGP_CASTEiJ_P0095804 Slc38a5 protein_coding protein_coding MGP_CASTEiJ_T0095805.1 MGP_CASTEiJ_G0034529.1 mouse_genomes_project X 2867619 2877736 + MGP_CASTEiJ_P0095805 Slc38a5 protein_coding protein_coding MGP_CASTEiJ_T0009179.1 MGP_CASTEiJ_G0007379.1 mouse_genomes_project X 86237002 86248700 + lincRNA lincRNA MGP_CASTEiJ_T0097517.1 MGP_CASTEiJ_G0035026.1 mouse_genomes_project X 112258552 112274774 - MGP_CASTEiJ_P0097517 Xkrx protein_coding protein_coding MGP_CASTEiJ_T0097518.1 MGP_CASTEiJ_G0035026.1 mouse_genomes_project X 112262816 112274922 - Xkrx protein_coding processed_transcript MGP_CASTEiJ_T0010872.1 MGP_CASTEiJ_G0009060.1 mouse_genomes_project X 81575940 81576029 + Mir676 miRNA miRNA MGP_CASTEiJ_T0017848.1 MGP_CASTEiJ_G0015083.1 mouse_genomes_project X 2266816 2274694 + processed_transcript processed_transcript MGP_CASTEiJ_T0015675.1 MGP_CASTEiJ_G0013838.1 mouse_genomes_project X 30410630 30411532 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010870.1 MGP_CASTEiJ_G0009058.1 mouse_genomes_project X 77616948 77617058 + Mir223 miRNA miRNA MGP_CASTEiJ_T0095857.1 MGP_CASTEiJ_G0034547.1 mouse_genomes_project X 7329901 7347945 - MGP_CASTEiJ_P0095857 1810030O07Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0010845.1 MGP_CASTEiJ_G0009033.1 mouse_genomes_project X 48426450 48426528 - Mir880 miRNA miRNA MGP_CASTEiJ_T0102633.1 MGP_CASTEiJ_G0039357.1 mouse_genomes_project X 58061794 58062754 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0098697.1 MGP_CASTEiJ_G0035628.1 mouse_genomes_project X 84174191 84174292 - Gm24509 rRNA rRNA MGP_CASTEiJ_T0097963.1 MGP_CASTEiJ_G0035149.1 mouse_genomes_project X 129531312 129615414 + MGP_CASTEiJ_P0097963 Iqsec2 protein_coding protein_coding MGP_CASTEiJ_T0097964.1 MGP_CASTEiJ_G0035149.1 mouse_genomes_project X 129531316 129615415 + MGP_CASTEiJ_P0097964 Iqsec2 protein_coding protein_coding MGP_CASTEiJ_T0097965.1 MGP_CASTEiJ_G0035149.1 mouse_genomes_project X 129531517 129582099 + MGP_CASTEiJ_P0097965 Iqsec2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097966.1 MGP_CASTEiJ_G0035149.1 mouse_genomes_project X 129567192 129593275 + Iqsec2 protein_coding processed_transcript MGP_CASTEiJ_T0097967.1 MGP_CASTEiJ_G0035149.1 mouse_genomes_project X 129567192 129582735 + Iqsec2 protein_coding processed_transcript MGP_CASTEiJ_T0097968.1 MGP_CASTEiJ_G0035149.1 mouse_genomes_project X 129567192 129582735 + Iqsec2 protein_coding processed_transcript MGP_CASTEiJ_T0097969.1 MGP_CASTEiJ_G0035149.1 mouse_genomes_project X 129592279 129614066 + MGP_CASTEiJ_P0097969 Iqsec2 protein_coding protein_coding MGP_CASTEiJ_T0015603.1 MGP_CASTEiJ_G0013766.1 mouse_genomes_project X 12148284 12149104 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100200.1 MGP_CASTEiJ_G0037113.1 mouse_genomes_project X 57247402 57247566 - Gm25421 snRNA snRNA MGP_CASTEiJ_T0098707.1 MGP_CASTEiJ_G0035638.1 mouse_genomes_project X 145286358 145286468 + Gm24772 rRNA rRNA MGP_CASTEiJ_T0097823.1 MGP_CASTEiJ_G0035126.1 mouse_genomes_project X 122690835 122990731 - MGP_CASTEiJ_P0097823 Trpc5 protein_coding protein_coding MGP_CASTEiJ_T0097824.1 MGP_CASTEiJ_G0035126.1 mouse_genomes_project X 122730136 122990554 - Trpc5 protein_coding retained_intron MGP_CASTEiJ_T0097064.1 MGP_CASTEiJ_G0034893.1 mouse_genomes_project X 78353791 78363314 + MGP_CASTEiJ_P0097064 Pgr15l protein_coding protein_coding MGP_CASTEiJ_T0100223.1 MGP_CASTEiJ_G0037136.1 mouse_genomes_project X 112628802 112628909 + Gm23124 snRNA snRNA MGP_CASTEiJ_T0095828.1 MGP_CASTEiJ_G0034541.1 mouse_genomes_project X 4633200 4784576 - MGP_CASTEiJ_P0095828 Rpgr protein_coding protein_coding MGP_CASTEiJ_T0095829.1 MGP_CASTEiJ_G0034541.1 mouse_genomes_project X 4719710 4784576 - MGP_CASTEiJ_P0095829 Rpgr protein_coding protein_coding MGP_CASTEiJ_T0095830.1 MGP_CASTEiJ_G0034541.1 mouse_genomes_project X 4719710 4784576 - MGP_CASTEiJ_P0095830 Rpgr protein_coding protein_coding MGP_CASTEiJ_T0095831.1 MGP_CASTEiJ_G0034541.1 mouse_genomes_project X 4720168 4784391 - MGP_CASTEiJ_P0095831 Rpgr protein_coding protein_coding MGP_CASTEiJ_T0095832.1 MGP_CASTEiJ_G0034541.1 mouse_genomes_project X 4722080 4784576 - MGP_CASTEiJ_P0095832 Rpgr protein_coding protein_coding MGP_CASTEiJ_T0095833.1 MGP_CASTEiJ_G0034541.1 mouse_genomes_project X 4743161 4784416 - Rpgr protein_coding retained_intron MGP_CASTEiJ_T0095834.1 MGP_CASTEiJ_G0034541.1 mouse_genomes_project X 4774634 4784391 - Rpgr protein_coding retained_intron MGP_CASTEiJ_T0095835.1 MGP_CASTEiJ_G0034541.1 mouse_genomes_project X 4781181 4784140 - Rpgr protein_coding processed_transcript MGP_CASTEiJ_T0016099.1 MGP_CASTEiJ_G0014262.1 mouse_genomes_project X 118438491 118439472 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015828.1 MGP_CASTEiJ_G0013991.1 mouse_genomes_project X 67139486 67139923 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015668.1 MGP_CASTEiJ_G0013831.1 mouse_genomes_project X 27611688 27612083 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015635.1 MGP_CASTEiJ_G0013798.1 mouse_genomes_project X 20061372 20063271 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102631.1 MGP_CASTEiJ_G0039355.1 mouse_genomes_project X 56638276 56638414 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0096948.1 MGP_CASTEiJ_G0034859.1 mouse_genomes_project X 70780811 70786140 - MGP_CASTEiJ_P0096948 Pet2 protein_coding protein_coding MGP_CASTEiJ_T0096949.1 MGP_CASTEiJ_G0034859.1 mouse_genomes_project X 70780811 70786140 - MGP_CASTEiJ_P0096949 Pet2 protein_coding protein_coding MGP_CASTEiJ_T0096829.1 MGP_CASTEiJ_G0034819.1 mouse_genomes_project X 56782885 56803985 - MGP_CASTEiJ_P0096829 Mpp1 protein_coding protein_coding MGP_CASTEiJ_T0096830.1 MGP_CASTEiJ_G0034819.1 mouse_genomes_project X 56783798 56803813 - MGP_CASTEiJ_P0096830 Mpp1 protein_coding protein_coding MGP_CASTEiJ_T0096831.1 MGP_CASTEiJ_G0034819.1 mouse_genomes_project X 56784864 56803918 - MGP_CASTEiJ_P0096831 Mpp1 protein_coding protein_coding MGP_CASTEiJ_T0096832.1 MGP_CASTEiJ_G0034819.1 mouse_genomes_project X 56785517 56803823 - MGP_CASTEiJ_P0096832 Mpp1 protein_coding protein_coding MGP_CASTEiJ_T0096833.1 MGP_CASTEiJ_G0034819.1 mouse_genomes_project X 56786709 56803823 - Mpp1 protein_coding processed_transcript MGP_CASTEiJ_T0096834.1 MGP_CASTEiJ_G0034819.1 mouse_genomes_project X 56788987 56791001 - Mpp1 protein_coding retained_intron MGP_CASTEiJ_T0096835.1 MGP_CASTEiJ_G0034819.1 mouse_genomes_project X 56789213 56803823 - MGP_CASTEiJ_P0096835 Mpp1 protein_coding protein_coding MGP_CASTEiJ_T0096836.1 MGP_CASTEiJ_G0034819.1 mouse_genomes_project X 56794643 56803823 - MGP_CASTEiJ_P0096836 Mpp1 protein_coding protein_coding MGP_CASTEiJ_T0096837.1 MGP_CASTEiJ_G0034819.1 mouse_genomes_project X 56796062 56803955 - Mpp1 protein_coding retained_intron MGP_CASTEiJ_T0096838.1 MGP_CASTEiJ_G0034819.1 mouse_genomes_project X 56798897 56803922 - MGP_CASTEiJ_P0096838 Mpp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0017850.1 MGP_CASTEiJ_G0015085.1 mouse_genomes_project X 7442076 7504806 + Gm14634 processed_transcript processed_transcript MGP_CASTEiJ_T0017851.1 MGP_CASTEiJ_G0015085.1 mouse_genomes_project X 7442340 7501399 + Gm14634 processed_transcript processed_transcript MGP_CASTEiJ_T0097164.1 MGP_CASTEiJ_G0034918.1 mouse_genomes_project X 82471473 82474078 - Gm614 protein_coding processed_transcript MGP_CASTEiJ_T0097165.1 MGP_CASTEiJ_G0034918.1 mouse_genomes_project X 82471473 82474095 - MGP_CASTEiJ_P0097165 Gm614 protein_coding protein_coding MGP_CASTEiJ_T0101435.1 MGP_CASTEiJ_G0038348.1 mouse_genomes_project X 55407515 55407580 + Gm23615 snoRNA snoRNA MGP_CASTEiJ_T0095953.1 MGP_CASTEiJ_G0034575.1 mouse_genomes_project X 15105856 15122282 + MGP_CASTEiJ_P0095953 Usp11 protein_coding protein_coding MGP_CASTEiJ_T0095954.1 MGP_CASTEiJ_G0034575.1 mouse_genomes_project X 15105884 15115109 + Usp11 protein_coding processed_transcript MGP_CASTEiJ_T0095955.1 MGP_CASTEiJ_G0034575.1 mouse_genomes_project X 15105910 15119432 + Usp11 protein_coding retained_intron MGP_CASTEiJ_T0095956.1 MGP_CASTEiJ_G0034575.1 mouse_genomes_project X 15113780 15122280 + Usp11 protein_coding retained_intron MGP_CASTEiJ_T0010894.1 MGP_CASTEiJ_G0009082.1 mouse_genomes_project X 122164531 122164662 - miRNA miRNA MGP_CASTEiJ_T0017886.1 MGP_CASTEiJ_G0015100.1 mouse_genomes_project X 83535166 83648820 + Gm14858 processed_transcript processed_transcript MGP_CASTEiJ_T0017887.1 MGP_CASTEiJ_G0015100.1 mouse_genomes_project X 83535295 83541936 + Gm14858 processed_transcript processed_transcript MGP_CASTEiJ_T0096104.1 MGP_CASTEiJ_G0034634.1 mouse_genomes_project X 22648665 22650987 + MGP_CASTEiJ_P0096104 Cypt15 protein_coding protein_coding MGP_CASTEiJ_T0010857.1 MGP_CASTEiJ_G0009045.1 mouse_genomes_project X 53819682 53819764 - Mir224 miRNA miRNA MGP_CASTEiJ_T0100190.1 MGP_CASTEiJ_G0037103.1 mouse_genomes_project X 38452544 38452710 + Gm26312 snRNA snRNA MGP_CASTEiJ_T0095650.1 MGP_CASTEiJ_G0034499.1 mouse_genomes_project X 2216343 2220273 - protein_coding retained_intron MGP_CASTEiJ_T0095651.1 MGP_CASTEiJ_G0034499.1 mouse_genomes_project X 2216343 2220291 - MGP_CASTEiJ_P0095651 protein_coding protein_coding MGP_CASTEiJ_T0095653.1 MGP_CASTEiJ_G0034499.1 mouse_genomes_project X 2218216 2220214 - protein_coding retained_intron MGP_CASTEiJ_T0002409.1 MGP_CASTEiJ_G0002326.1 mouse_genomes_project X 129694454 129695927 - TEC TEC MGP_CASTEiJ_T0015911.1 MGP_CASTEiJ_G0014074.1 mouse_genomes_project X 82447328 82447597 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097395.1 MGP_CASTEiJ_G0034982.1 mouse_genomes_project X 90017809 90018697 - MGP_CASTEiJ_P0097395 Gm379 protein_coding protein_coding MGP_CASTEiJ_T0016008.1 MGP_CASTEiJ_G0014171.1 mouse_genomes_project X 98231488 98231756 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097010.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76420612 76578000 - MGP_CASTEiJ_P0097010 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0097011.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76420613 76545700 - MGP_CASTEiJ_P0097011 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0097012.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76420615 76545676 - MGP_CASTEiJ_P0097012 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0097013.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76420621 76545778 - MGP_CASTEiJ_P0097013 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0097014.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76420637 76506516 - MGP_CASTEiJ_P0097014 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0097015.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76421856 76578003 - MGP_CASTEiJ_P0097015 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0097016.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76421945 76578331 - MGP_CASTEiJ_P0097016 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0097017.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76423167 76578319 - MGP_CASTEiJ_P0097017 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0097018.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76423172 76545792 - MGP_CASTEiJ_P0097018 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0097019.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76423198 76578354 - MGP_CASTEiJ_P0097019 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0097020.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76423248 76454292 - MGP_CASTEiJ_P0097020 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0097021.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76423559 76426575 - MGP_CASTEiJ_P0097021 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0097022.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76423560 76430915 - MGP_CASTEiJ_P0097022 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0097023.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76449562 76545117 - MGP_CASTEiJ_P0097023 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0097024.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76454212 76577950 - MGP_CASTEiJ_P0097024 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0097025.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76474991 76545831 - MGP_CASTEiJ_P0097025 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0097026.1 MGP_CASTEiJ_G0034880.1 mouse_genomes_project X 76486581 76545730 - MGP_CASTEiJ_P0097026 Arhgef9 protein_coding protein_coding MGP_CASTEiJ_T0098695.1 MGP_CASTEiJ_G0035626.1 mouse_genomes_project X 67790445 67790562 - n-R5s10 rRNA rRNA MGP_CASTEiJ_T0096364.1 MGP_CASTEiJ_G0034717.1 mouse_genomes_project X 40589420 40595921 + MGP_CASTEiJ_P0096364 4930550L24Rik protein_coding protein_coding MGP_CASTEiJ_T0096365.1 MGP_CASTEiJ_G0034717.1 mouse_genomes_project X 40591500 40595921 + MGP_CASTEiJ_P0096365 4930550L24Rik protein_coding protein_coding MGP_CASTEiJ_T0100203.1 MGP_CASTEiJ_G0037116.1 mouse_genomes_project X 69584829 69584936 + Gm25006 snRNA snRNA MGP_CASTEiJ_T0096909.1 MGP_CASTEiJ_G0034847.1 mouse_genomes_project X 61115564 61162515 - MGP_CASTEiJ_P0096909 protein_coding protein_coding MGP_CASTEiJ_T0011432.1 MGP_CASTEiJ_G0009620.1 mouse_genomes_project X 84845185 84845253 - Gm27733 misc_RNA misc_RNA MGP_CASTEiJ_T0015767.1 MGP_CASTEiJ_G0013930.1 mouse_genomes_project X 51983852 51984800 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096021.1 MGP_CASTEiJ_G0034597.1 mouse_genomes_project X 19710495 19724751 + Lonrf3 protein_coding retained_intron MGP_CASTEiJ_T0096022.1 MGP_CASTEiJ_G0034597.1 mouse_genomes_project X 19710495 19746679 + MGP_CASTEiJ_P0096022 Lonrf3 protein_coding protein_coding MGP_CASTEiJ_T0096023.1 MGP_CASTEiJ_G0034597.1 mouse_genomes_project X 19711358 19723894 + MGP_CASTEiJ_P0096023 Lonrf3 protein_coding protein_coding MGP_CASTEiJ_T0016036.1 MGP_CASTEiJ_G0014199.1 mouse_genomes_project X 104647063 104647726 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096699.1 MGP_CASTEiJ_G0034799.1 mouse_genomes_project X 55923114 55934925 - MGP_CASTEiJ_P0096699 Dnase1l1 protein_coding protein_coding MGP_CASTEiJ_T0096700.1 MGP_CASTEiJ_G0034799.1 mouse_genomes_project X 55923115 55935526 - MGP_CASTEiJ_P0096700 Dnase1l1 protein_coding protein_coding MGP_CASTEiJ_T0096701.1 MGP_CASTEiJ_G0034799.1 mouse_genomes_project X 55923216 55934787 - MGP_CASTEiJ_P0096701 Dnase1l1 protein_coding protein_coding MGP_CASTEiJ_T0096702.1 MGP_CASTEiJ_G0034799.1 mouse_genomes_project X 55923852 55934864 - MGP_CASTEiJ_P0096702 Dnase1l1 protein_coding protein_coding MGP_CASTEiJ_T0096703.1 MGP_CASTEiJ_G0034799.1 mouse_genomes_project X 55924247 55930017 - Dnase1l1 protein_coding retained_intron MGP_CASTEiJ_T0096704.1 MGP_CASTEiJ_G0034799.1 mouse_genomes_project X 55929955 55934815 - Dnase1l1 protein_coding retained_intron MGP_CASTEiJ_T0009143.1 MGP_CASTEiJ_G0007358.1 mouse_genomes_project X 32329057 32360412 - Gm14696 lincRNA lincRNA MGP_CASTEiJ_T0096464.1 MGP_CASTEiJ_G0034750.1 mouse_genomes_project X 53229837 53235377 + MGP_CASTEiJ_P0096464 Gpr50 protein_coding protein_coding MGP_CASTEiJ_T0096465.1 MGP_CASTEiJ_G0034750.1 mouse_genomes_project X 53229912 53241226 + MGP_CASTEiJ_P0096465 Gpr50 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096466.1 MGP_CASTEiJ_G0034750.1 mouse_genomes_project X 53230136 53233512 + Gpr50 protein_coding processed_transcript MGP_CASTEiJ_T0096467.1 MGP_CASTEiJ_G0034750.1 mouse_genomes_project X 53230136 53233512 + Gpr50 protein_coding processed_transcript MGP_CASTEiJ_T0016048.1 MGP_CASTEiJ_G0014211.1 mouse_genomes_project X 108673751 108674539 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096213.1 MGP_CASTEiJ_G0034660.1 mouse_genomes_project X 31660501 31668151 + Slc25a14 protein_coding processed_transcript MGP_CASTEiJ_T0096214.1 MGP_CASTEiJ_G0034660.1 mouse_genomes_project X 31660666 31701853 + MGP_CASTEiJ_P0096214 Slc25a14 protein_coding protein_coding MGP_CASTEiJ_T0096215.1 MGP_CASTEiJ_G0034660.1 mouse_genomes_project X 31660666 31701853 + MGP_CASTEiJ_P0096215 Slc25a14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096216.1 MGP_CASTEiJ_G0034660.1 mouse_genomes_project X 31660836 31691717 + Slc25a14 protein_coding processed_transcript MGP_CASTEiJ_T0096217.1 MGP_CASTEiJ_G0034660.1 mouse_genomes_project X 31660852 31701853 + MGP_CASTEiJ_P0096217 Slc25a14 protein_coding protein_coding MGP_CASTEiJ_T0096218.1 MGP_CASTEiJ_G0034660.1 mouse_genomes_project X 31660907 31672344 + Slc25a14 protein_coding retained_intron MGP_CASTEiJ_T0096219.1 MGP_CASTEiJ_G0034660.1 mouse_genomes_project X 31661049 31701851 + MGP_CASTEiJ_P0096219 Slc25a14 protein_coding protein_coding MGP_CASTEiJ_T0096220.1 MGP_CASTEiJ_G0034660.1 mouse_genomes_project X 31662502 31701859 + MGP_CASTEiJ_P0096220 Slc25a14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0015598.1 MGP_CASTEiJ_G0013761.1 mouse_genomes_project X 10810354 10810741 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011423.1 MGP_CASTEiJ_G0009611.1 mouse_genomes_project X 20488056 20488327 - Gm24809 misc_RNA misc_RNA MGP_CASTEiJ_T0097254.1 MGP_CASTEiJ_G0034937.1 mouse_genomes_project X 83570061 83792138 - MGP_CASTEiJ_P0097254 Hdac8 protein_coding protein_coding MGP_CASTEiJ_T0097255.1 MGP_CASTEiJ_G0034937.1 mouse_genomes_project X 83693242 83791860 - MGP_CASTEiJ_P0097255 Hdac8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097256.1 MGP_CASTEiJ_G0034937.1 mouse_genomes_project X 83695197 83791925 - Hdac8 protein_coding processed_transcript MGP_CASTEiJ_T0097257.1 MGP_CASTEiJ_G0034937.1 mouse_genomes_project X 83701936 83792124 - Hdac8 protein_coding processed_transcript MGP_CASTEiJ_T0097258.1 MGP_CASTEiJ_G0034937.1 mouse_genomes_project X 83784906 83791520 - Hdac8 protein_coding retained_intron MGP_CASTEiJ_T0096976.1 MGP_CASTEiJ_G0034871.1 mouse_genomes_project X 75490801 75546778 - MGP_CASTEiJ_P0096976 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096977.1 MGP_CASTEiJ_G0034871.1 mouse_genomes_project X 75501219 75546580 - MGP_CASTEiJ_P0096977 protein_coding protein_coding MGP_CASTEiJ_T0096978.1 MGP_CASTEiJ_G0034871.1 mouse_genomes_project X 75520270 75546314 - MGP_CASTEiJ_P0096978 protein_coding protein_coding MGP_CASTEiJ_T0096979.1 MGP_CASTEiJ_G0034871.1 mouse_genomes_project X 75520767 75546887 - protein_coding processed_transcript MGP_CASTEiJ_T0096980.1 MGP_CASTEiJ_G0034871.1 mouse_genomes_project X 75536628 75546337 - protein_coding retained_intron MGP_CASTEiJ_T0101473.1 MGP_CASTEiJ_G0038386.1 mouse_genomes_project X 134773349 134773482 + Gm24281 snoRNA snoRNA MGP_CASTEiJ_T0016040.1 MGP_CASTEiJ_G0014203.1 mouse_genomes_project X 105172003 105172367 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098283.1 MGP_CASTEiJ_G0035232.1 mouse_genomes_project X 146023556 146049411 - MGP_CASTEiJ_P0098283 Msl3 protein_coding protein_coding MGP_CASTEiJ_T0098284.1 MGP_CASTEiJ_G0035232.1 mouse_genomes_project X 146026428 146032927 - Msl3 protein_coding retained_intron MGP_CASTEiJ_T0098285.1 MGP_CASTEiJ_G0035232.1 mouse_genomes_project X 146032598 146048101 - Msl3 protein_coding retained_intron MGP_CASTEiJ_T0015716.1 MGP_CASTEiJ_G0013879.1 mouse_genomes_project X 41531523 41532580 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015687.1 MGP_CASTEiJ_G0013850.1 mouse_genomes_project X 33394365 33394748 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096426.1 MGP_CASTEiJ_G0034742.1 mouse_genomes_project X 51910392 51913943 + MGP_CASTEiJ_P0096426 1110012L19Rik protein_coding protein_coding MGP_CASTEiJ_T0098058.1 MGP_CASTEiJ_G0035179.1 mouse_genomes_project X 135172240 135442636 - MGP_CASTEiJ_P0098058 Cnksr2 protein_coding protein_coding MGP_CASTEiJ_T0098059.1 MGP_CASTEiJ_G0035179.1 mouse_genomes_project X 135183533 135442636 - MGP_CASTEiJ_P0098059 Cnksr2 protein_coding protein_coding MGP_CASTEiJ_T0098060.1 MGP_CASTEiJ_G0035179.1 mouse_genomes_project X 135209774 135229144 - Cnksr2 protein_coding retained_intron MGP_CASTEiJ_T0098061.1 MGP_CASTEiJ_G0035179.1 mouse_genomes_project X 135378383 135442236 - MGP_CASTEiJ_P0098061 Cnksr2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009209.1 MGP_CASTEiJ_G0007399.1 mouse_genomes_project X 144421272 144428509 - Gm8817 lincRNA lincRNA MGP_CASTEiJ_T0009210.1 MGP_CASTEiJ_G0007399.1 mouse_genomes_project X 144421415 144428509 - Gm8817 lincRNA lincRNA MGP_CASTEiJ_T0009211.1 MGP_CASTEiJ_G0007399.1 mouse_genomes_project X 144421631 144426514 - Gm8817 lincRNA lincRNA MGP_CASTEiJ_T0016213.1 MGP_CASTEiJ_G0014376.1 mouse_genomes_project X 140216200 140217035 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096158.1 MGP_CASTEiJ_G0034644.1 mouse_genomes_project X 27526954 27529848 - MGP_CASTEiJ_P0096158 Dcaf12l2 protein_coding protein_coding MGP_CASTEiJ_T0016146.1 MGP_CASTEiJ_G0014309.1 mouse_genomes_project X 124517744 124518787 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016115.1 MGP_CASTEiJ_G0014278.1 mouse_genomes_project X 120354999 120355257 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101447.1 MGP_CASTEiJ_G0038360.1 mouse_genomes_project X 82344926 82345046 - Gm24061 snoRNA snoRNA MGP_CASTEiJ_T0015669.1 MGP_CASTEiJ_G0013832.1 mouse_genomes_project X 27658591 27658931 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096366.1 MGP_CASTEiJ_G0034718.1 mouse_genomes_project X 40748130 41262631 - MGP_CASTEiJ_P0096366 Fgf13 protein_coding protein_coding MGP_CASTEiJ_T0096367.1 MGP_CASTEiJ_G0034718.1 mouse_genomes_project X 40748130 40821964 - MGP_CASTEiJ_P0096367 Fgf13 protein_coding protein_coding MGP_CASTEiJ_T0096368.1 MGP_CASTEiJ_G0034718.1 mouse_genomes_project X 40748130 40855825 - MGP_CASTEiJ_P0096368 Fgf13 protein_coding protein_coding MGP_CASTEiJ_T0096369.1 MGP_CASTEiJ_G0034718.1 mouse_genomes_project X 40749418 40820768 - Fgf13 protein_coding processed_transcript MGP_CASTEiJ_T0096370.1 MGP_CASTEiJ_G0034718.1 mouse_genomes_project X 40819472 40820716 - Fgf13 protein_coding processed_transcript MGP_CASTEiJ_T0096371.1 MGP_CASTEiJ_G0034718.1 mouse_genomes_project X 40819475 41262032 - MGP_CASTEiJ_P0096371 Fgf13 protein_coding protein_coding MGP_CASTEiJ_T0096372.1 MGP_CASTEiJ_G0034718.1 mouse_genomes_project X 40945545 41262631 - MGP_CASTEiJ_P0096372 Fgf13 protein_coding protein_coding MGP_CASTEiJ_T0096373.1 MGP_CASTEiJ_G0034718.1 mouse_genomes_project X 40945622 41262381 - MGP_CASTEiJ_P0096373 Fgf13 protein_coding protein_coding MGP_CASTEiJ_T0096374.1 MGP_CASTEiJ_G0034718.1 mouse_genomes_project X 41261373 41262608 - Fgf13 protein_coding retained_intron MGP_CASTEiJ_T0016150.1 MGP_CASTEiJ_G0014313.1 mouse_genomes_project X 124902602 124903576 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015653.1 MGP_CASTEiJ_G0013816.1 mouse_genomes_project X 24190627 24191738 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097791.1 MGP_CASTEiJ_G0035122.1 mouse_genomes_project X 121845615 122131758 + MGP_CASTEiJ_P0097791 Pak3 protein_coding protein_coding MGP_CASTEiJ_T0097792.1 MGP_CASTEiJ_G0035122.1 mouse_genomes_project X 121845722 122100452 + MGP_CASTEiJ_P0097792 Pak3 protein_coding protein_coding MGP_CASTEiJ_T0097793.1 MGP_CASTEiJ_G0035122.1 mouse_genomes_project X 121999164 122131758 + MGP_CASTEiJ_P0097793 Pak3 protein_coding protein_coding MGP_CASTEiJ_T0097794.1 MGP_CASTEiJ_G0035122.1 mouse_genomes_project X 121999247 122030058 + MGP_CASTEiJ_P0097794 Pak3 protein_coding protein_coding MGP_CASTEiJ_T0097795.1 MGP_CASTEiJ_G0035122.1 mouse_genomes_project X 121999265 122053469 + MGP_CASTEiJ_P0097795 Pak3 protein_coding protein_coding MGP_CASTEiJ_T0097796.1 MGP_CASTEiJ_G0035122.1 mouse_genomes_project X 121999400 122069306 + MGP_CASTEiJ_P0097796 Pak3 protein_coding protein_coding MGP_CASTEiJ_T0097797.1 MGP_CASTEiJ_G0035122.1 mouse_genomes_project X 121999453 122131758 + MGP_CASTEiJ_P0097797 Pak3 protein_coding protein_coding MGP_CASTEiJ_T0097798.1 MGP_CASTEiJ_G0035122.1 mouse_genomes_project X 122000618 122131758 + MGP_CASTEiJ_P0097798 Pak3 protein_coding protein_coding MGP_CASTEiJ_T0097799.1 MGP_CASTEiJ_G0035122.1 mouse_genomes_project X 122000618 122131758 + MGP_CASTEiJ_P0097799 Pak3 protein_coding protein_coding MGP_CASTEiJ_T0097800.1 MGP_CASTEiJ_G0035122.1 mouse_genomes_project X 122029959 122131762 + MGP_CASTEiJ_P0097800 Pak3 protein_coding protein_coding MGP_CASTEiJ_T0002406.1 MGP_CASTEiJ_G0002323.1 mouse_genomes_project X 106555712 106557574 + TEC TEC MGP_CASTEiJ_T0096017.1 MGP_CASTEiJ_G0034596.1 mouse_genomes_project X 19573512 19576809 + MGP_CASTEiJ_P0096017 Zcchc12 protein_coding protein_coding MGP_CASTEiJ_T0096018.1 MGP_CASTEiJ_G0034596.1 mouse_genomes_project X 19573554 19576817 + MGP_CASTEiJ_P0096018 Zcchc12 protein_coding protein_coding MGP_CASTEiJ_T0096019.1 MGP_CASTEiJ_G0034596.1 mouse_genomes_project X 19573567 19576816 + MGP_CASTEiJ_P0096019 Zcchc12 protein_coding protein_coding MGP_CASTEiJ_T0096020.1 MGP_CASTEiJ_G0034596.1 mouse_genomes_project X 19573594 19576816 + MGP_CASTEiJ_P0096020 Zcchc12 protein_coding protein_coding MGP_CASTEiJ_T0097149.1 MGP_CASTEiJ_G0034915.1 mouse_genomes_project X 82280606 82286861 - Slc7a3 protein_coding retained_intron MGP_CASTEiJ_T0097150.1 MGP_CASTEiJ_G0034915.1 mouse_genomes_project X 82280622 82286808 - MGP_CASTEiJ_P0097150 Slc7a3 protein_coding protein_coding MGP_CASTEiJ_T0097151.1 MGP_CASTEiJ_G0034915.1 mouse_genomes_project X 82280623 82287476 - MGP_CASTEiJ_P0097151 Slc7a3 protein_coding protein_coding MGP_CASTEiJ_T0097152.1 MGP_CASTEiJ_G0034915.1 mouse_genomes_project X 82280623 82286828 - MGP_CASTEiJ_P0097152 Slc7a3 protein_coding protein_coding MGP_CASTEiJ_T0097153.1 MGP_CASTEiJ_G0034915.1 mouse_genomes_project X 82281207 82285631 - Slc7a3 protein_coding processed_transcript MGP_CASTEiJ_T0097154.1 MGP_CASTEiJ_G0034915.1 mouse_genomes_project X 82283004 82283668 - Slc7a3 protein_coding retained_intron MGP_CASTEiJ_T0097155.1 MGP_CASTEiJ_G0034915.1 mouse_genomes_project X 82283192 82283894 - Slc7a3 protein_coding retained_intron MGP_CASTEiJ_T0097709.1 MGP_CASTEiJ_G0035094.1 mouse_genomes_project X 118059084 118059721 - MGP_CASTEiJ_P0097709 protein_coding protein_coding MGP_CASTEiJ_T0015697.1 MGP_CASTEiJ_G0013860.1 mouse_genomes_project X 35794504 35794995 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010860.1 MGP_CASTEiJ_G0009048.1 mouse_genomes_project X 54129683 54129763 - Mir105 miRNA miRNA MGP_CASTEiJ_T0015586.1 MGP_CASTEiJ_G0013749.1 mouse_genomes_project X 7999196 8001334 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016202.1 MGP_CASTEiJ_G0014365.1 mouse_genomes_project X 137379595 137380092 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096872.1 MGP_CASTEiJ_G0034829.1 mouse_genomes_project X 57960225 57963660 + MGP_CASTEiJ_P0096872 protein_coding protein_coding MGP_CASTEiJ_T0096876.1 MGP_CASTEiJ_G0034833.1 mouse_genomes_project X 58061799 58062791 + MGP_CASTEiJ_P0096876 protein_coding protein_coding MGP_CASTEiJ_T0010906.1 MGP_CASTEiJ_G0009094.1 mouse_genomes_project X 144313428 144313556 + Gm44376 miRNA miRNA MGP_CASTEiJ_T0101693.1 MGP_CASTEiJ_G0038516.1 mouse_genomes_project X 70376769 70377255 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0005433.1 MGP_CASTEiJ_G0004588.1 mouse_genomes_project X 29327136 29384395 - 4930515L19Rik antisense antisense MGP_CASTEiJ_T0005445.1 MGP_CASTEiJ_G0004598.1 mouse_genomes_project X 52996543 53030540 + Gm16189 antisense antisense MGP_CASTEiJ_T0015903.1 MGP_CASTEiJ_G0014066.1 mouse_genomes_project X 80267223 80268225 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015649.1 MGP_CASTEiJ_G0013812.1 mouse_genomes_project X 23299525 23300977 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015912.1 MGP_CASTEiJ_G0014075.1 mouse_genomes_project X 82708019 82708231 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098099.1 MGP_CASTEiJ_G0035186.1 mouse_genomes_project X 137334501 137473560 + MGP_CASTEiJ_P0098099 Map3k15 protein_coding protein_coding MGP_CASTEiJ_T0098699.1 MGP_CASTEiJ_G0035630.1 mouse_genomes_project X 129137054 129137173 + n-R5s13 rRNA rRNA MGP_CASTEiJ_T0100216.1 MGP_CASTEiJ_G0037129.1 mouse_genomes_project X 91874114 91874305 - Gm26108 snRNA snRNA MGP_CASTEiJ_T0097498.1 MGP_CASTEiJ_G0035022.1 mouse_genomes_project X 112012690 112035716 + MGP_CASTEiJ_P0097498 Srpx2 protein_coding protein_coding MGP_CASTEiJ_T0015965.1 MGP_CASTEiJ_G0014128.1 mouse_genomes_project X 88733906 88734933 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097701.1 MGP_CASTEiJ_G0035090.1 mouse_genomes_project X 117660454 117665888 + MGP_CASTEiJ_P0097701 Trap1a protein_coding protein_coding MGP_CASTEiJ_T0015822.1 MGP_CASTEiJ_G0013985.1 mouse_genomes_project X 66588138 66588341 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005453.1 MGP_CASTEiJ_G0004606.1 mouse_genomes_project X 77614040 77617768 + F630028O10Rik antisense antisense MGP_CASTEiJ_T0005454.1 MGP_CASTEiJ_G0004606.1 mouse_genomes_project X 77614080 77617768 + F630028O10Rik antisense antisense MGP_CASTEiJ_T0097955.1 MGP_CASTEiJ_G0035147.1 mouse_genomes_project X 129382287 129393892 - MGP_CASTEiJ_P0097955 Ribc1 protein_coding protein_coding MGP_CASTEiJ_T0097956.1 MGP_CASTEiJ_G0035147.1 mouse_genomes_project X 129387264 129393867 - Ribc1 protein_coding processed_transcript MGP_CASTEiJ_T0010866.1 MGP_CASTEiJ_G0009054.1 mouse_genomes_project X 60437568 60437660 - Gm23556 miRNA miRNA MGP_CASTEiJ_T0016126.1 MGP_CASTEiJ_G0014289.1 mouse_genomes_project X 122442553 122444913 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101471.1 MGP_CASTEiJ_G0038384.1 mouse_genomes_project X 133815112 133815209 - Gm23404 snoRNA snoRNA MGP_CASTEiJ_T0097556.1 MGP_CASTEiJ_G0035039.1 mouse_genomes_project X 112860326 112864299 + MGP_CASTEiJ_P0097556 Armcx1 protein_coding protein_coding MGP_CASTEiJ_T0097557.1 MGP_CASTEiJ_G0035039.1 mouse_genomes_project X 112860333 112864308 + MGP_CASTEiJ_P0097557 Armcx1 protein_coding protein_coding MGP_CASTEiJ_T0097558.1 MGP_CASTEiJ_G0035039.1 mouse_genomes_project X 112860351 112861681 + Armcx1 protein_coding processed_transcript MGP_CASTEiJ_T0097559.1 MGP_CASTEiJ_G0035039.1 mouse_genomes_project X 112860351 112864301 + MGP_CASTEiJ_P0097559 Armcx1 protein_coding protein_coding MGP_CASTEiJ_T0097560.1 MGP_CASTEiJ_G0035039.1 mouse_genomes_project X 112860352 112864308 + MGP_CASTEiJ_P0097560 Armcx1 protein_coding protein_coding MGP_CASTEiJ_T0097561.1 MGP_CASTEiJ_G0035039.1 mouse_genomes_project X 112860366 112861875 + Armcx1 protein_coding processed_transcript MGP_CASTEiJ_T0097562.1 MGP_CASTEiJ_G0035039.1 mouse_genomes_project X 112860366 112861396 + Armcx1 protein_coding processed_transcript MGP_CASTEiJ_T0097563.1 MGP_CASTEiJ_G0035039.1 mouse_genomes_project X 112860376 112864299 + MGP_CASTEiJ_P0097563 Armcx1 protein_coding protein_coding MGP_CASTEiJ_T0097564.1 MGP_CASTEiJ_G0035039.1 mouse_genomes_project X 112860383 112864308 + MGP_CASTEiJ_P0097564 Armcx1 protein_coding protein_coding MGP_CASTEiJ_T0097565.1 MGP_CASTEiJ_G0035039.1 mouse_genomes_project X 112861624 112862905 + Armcx1 protein_coding processed_transcript MGP_CASTEiJ_T0016158.1 MGP_CASTEiJ_G0014321.1 mouse_genomes_project X 128554308 128554693 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015823.1 MGP_CASTEiJ_G0013986.1 mouse_genomes_project X 66593179 66594289 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010800.1 MGP_CASTEiJ_G0008988.1 mouse_genomes_project X 1764795 1764904 - Mir501 miRNA miRNA MGP_CASTEiJ_T0097293.1 MGP_CASTEiJ_G0034953.1 mouse_genomes_project X 85676480 85821010 - MGP_CASTEiJ_P0097293 Abcb7 protein_coding protein_coding MGP_CASTEiJ_T0097294.1 MGP_CASTEiJ_G0034953.1 mouse_genomes_project X 85742119 85821020 - Abcb7 protein_coding retained_intron MGP_CASTEiJ_T0097296.1 MGP_CASTEiJ_G0034955.1 mouse_genomes_project X 85958299 86095967 - MGP_CASTEiJ_P0097296 Zdhhc15 protein_coding protein_coding MGP_CASTEiJ_T0015654.1 MGP_CASTEiJ_G0013817.1 mouse_genomes_project X 24602933 24603189 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101437.1 MGP_CASTEiJ_G0038350.1 mouse_genomes_project X 56284218 56284353 + Gm26417 snoRNA snoRNA MGP_CASTEiJ_T0095737.1 MGP_CASTEiJ_G0034516.1 mouse_genomes_project X 2485326 2489934 + MGP_CASTEiJ_P0095737 Pcsk1n protein_coding protein_coding MGP_CASTEiJ_T0096357.1 MGP_CASTEiJ_G0034714.1 mouse_genomes_project X 39167942 39246240 + MGP_CASTEiJ_P0096357 Gm364 protein_coding protein_coding MGP_CASTEiJ_T0015710.1 MGP_CASTEiJ_G0013873.1 mouse_genomes_project X 39486184 39486767 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015651.1 MGP_CASTEiJ_G0013814.1 mouse_genomes_project X 23920552 23921112 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095727.1 MGP_CASTEiJ_G0034512.1 mouse_genomes_project X 2458159 2464231 - MGP_CASTEiJ_P0095727 Pqbp1 protein_coding protein_coding MGP_CASTEiJ_T0095728.1 MGP_CASTEiJ_G0034512.1 mouse_genomes_project X 2458223 2463941 - MGP_CASTEiJ_P0095728 Pqbp1 protein_coding protein_coding MGP_CASTEiJ_T0095729.1 MGP_CASTEiJ_G0034512.1 mouse_genomes_project X 2458351 2464161 - MGP_CASTEiJ_P0095729 Pqbp1 protein_coding protein_coding MGP_CASTEiJ_T0095730.1 MGP_CASTEiJ_G0034512.1 mouse_genomes_project X 2458434 2463962 - MGP_CASTEiJ_P0095730 Pqbp1 protein_coding protein_coding MGP_CASTEiJ_T0095731.1 MGP_CASTEiJ_G0034512.1 mouse_genomes_project X 2459512 2463858 - MGP_CASTEiJ_P0095731 Pqbp1 protein_coding protein_coding MGP_CASTEiJ_T0100198.1 MGP_CASTEiJ_G0037111.1 mouse_genomes_project X 54154339 54154446 + Gm23461 snRNA snRNA MGP_CASTEiJ_T0095875.1 MGP_CASTEiJ_G0034551.1 mouse_genomes_project X 8163114 8185540 + MGP_CASTEiJ_P0095875 Nyx protein_coding protein_coding MGP_CASTEiJ_T0101462.1 MGP_CASTEiJ_G0038375.1 mouse_genomes_project X 115348427 115348542 - Gm25770 snoRNA snoRNA MGP_CASTEiJ_T0098126.1 MGP_CASTEiJ_G0035191.1 mouse_genomes_project X 138107175 138146525 + MGP_CASTEiJ_P0098126 Rs1 protein_coding protein_coding MGP_CASTEiJ_T0098127.1 MGP_CASTEiJ_G0035191.1 mouse_genomes_project X 138107342 138141721 + MGP_CASTEiJ_P0098127 Rs1 protein_coding protein_coding MGP_CASTEiJ_T0098131.1 MGP_CASTEiJ_G0035191.1 mouse_genomes_project X 138138357 138142214 + Rs1 protein_coding processed_transcript MGP_CASTEiJ_T0017917.1 MGP_CASTEiJ_G0015106.1 mouse_genomes_project X 113520464 113782612 + processed_transcript processed_transcript MGP_CASTEiJ_T0096084.1 MGP_CASTEiJ_G0034627.1 mouse_genomes_project X 21654031 21675321 + MGP_CASTEiJ_P0096084 Atp1b4 protein_coding protein_coding MGP_CASTEiJ_T0096085.1 MGP_CASTEiJ_G0034627.1 mouse_genomes_project X 21654031 21675321 + MGP_CASTEiJ_P0096085 Atp1b4 protein_coding protein_coding MGP_CASTEiJ_T0096048.1 MGP_CASTEiJ_G0034608.1 mouse_genomes_project X 20498642 20501526 - MGP_CASTEiJ_P0096048 Rpl39 protein_coding protein_coding MGP_CASTEiJ_T0096049.1 MGP_CASTEiJ_G0034608.1 mouse_genomes_project X 20499765 20501290 - Rpl39 protein_coding retained_intron MGP_CASTEiJ_T0096050.1 MGP_CASTEiJ_G0034608.1 mouse_genomes_project X 20500659 20501280 - Rpl39 protein_coding retained_intron MGP_CASTEiJ_T0098165.1 MGP_CASTEiJ_G0035201.1 mouse_genomes_project X 140275700 140359290 + MGP_CASTEiJ_P0098165 Ctps2 protein_coding protein_coding MGP_CASTEiJ_T0098166.1 MGP_CASTEiJ_G0035201.1 mouse_genomes_project X 140275707 140299434 + Ctps2 protein_coding processed_transcript MGP_CASTEiJ_T0098167.1 MGP_CASTEiJ_G0035201.1 mouse_genomes_project X 140275707 140299110 + Ctps2 protein_coding processed_transcript MGP_CASTEiJ_T0098168.1 MGP_CASTEiJ_G0035201.1 mouse_genomes_project X 140276067 140408050 + MGP_CASTEiJ_P0098168 Ctps2 protein_coding protein_coding MGP_CASTEiJ_T0098169.1 MGP_CASTEiJ_G0035201.1 mouse_genomes_project X 140276094 140408233 + MGP_CASTEiJ_P0098169 Ctps2 protein_coding protein_coding MGP_CASTEiJ_T0098170.1 MGP_CASTEiJ_G0035201.1 mouse_genomes_project X 140276231 140408226 + MGP_CASTEiJ_P0098170 Ctps2 protein_coding protein_coding MGP_CASTEiJ_T0098171.1 MGP_CASTEiJ_G0035201.1 mouse_genomes_project X 140276247 140278050 + Ctps2 protein_coding processed_transcript MGP_CASTEiJ_T0098172.1 MGP_CASTEiJ_G0035201.1 mouse_genomes_project X 140276332 140408050 + MGP_CASTEiJ_P0098172 Ctps2 protein_coding protein_coding MGP_CASTEiJ_T0098173.1 MGP_CASTEiJ_G0035201.1 mouse_genomes_project X 140276633 140300576 + Ctps2 protein_coding processed_transcript MGP_CASTEiJ_T0098174.1 MGP_CASTEiJ_G0035201.1 mouse_genomes_project X 140307738 140314796 + Ctps2 protein_coding processed_transcript MGP_CASTEiJ_T0098175.1 MGP_CASTEiJ_G0035201.1 mouse_genomes_project X 140320213 140355970 + Ctps2 protein_coding processed_transcript MGP_CASTEiJ_T0098176.1 MGP_CASTEiJ_G0035201.1 mouse_genomes_project X 140320596 140320886 + Ctps2 protein_coding processed_transcript MGP_CASTEiJ_T0098178.1 MGP_CASTEiJ_G0035201.1 mouse_genomes_project X 140349927 140407040 + MGP_CASTEiJ_P0098178 Ctps2 protein_coding protein_coding MGP_CASTEiJ_T0016138.1 MGP_CASTEiJ_G0014301.1 mouse_genomes_project X 123537657 123538353 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097008.1 MGP_CASTEiJ_G0034878.1 mouse_genomes_project X 76245314 76248542 - MGP_CASTEiJ_P0097008 Zxdb protein_coding protein_coding MGP_CASTEiJ_T0100180.1 MGP_CASTEiJ_G0037093.1 mouse_genomes_project X 17248333 17248443 + Gm26131 snRNA snRNA MGP_CASTEiJ_T0096812.1 MGP_CASTEiJ_G0034816.1 mouse_genomes_project X 56628302 56629522 + MGP_CASTEiJ_P0096812 protein_coding protein_coding MGP_CASTEiJ_T0015909.1 MGP_CASTEiJ_G0014072.1 mouse_genomes_project X 81779238 81779638 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015664.1 MGP_CASTEiJ_G0013827.1 mouse_genomes_project X 26806730 26807013 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101466.1 MGP_CASTEiJ_G0038379.1 mouse_genomes_project X 125250971 125251099 + Snora35 snoRNA snoRNA MGP_CASTEiJ_T0097036.1 MGP_CASTEiJ_G0034886.1 mouse_genomes_project X 77288066 77311387 - MGP_CASTEiJ_P0097036 Las1l protein_coding protein_coding MGP_CASTEiJ_T0097037.1 MGP_CASTEiJ_G0034886.1 mouse_genomes_project X 77288066 77311387 - MGP_CASTEiJ_P0097037 Las1l protein_coding protein_coding MGP_CASTEiJ_T0097038.1 MGP_CASTEiJ_G0034886.1 mouse_genomes_project X 77293620 77311360 - Las1l protein_coding retained_intron MGP_CASTEiJ_T0097039.1 MGP_CASTEiJ_G0034886.1 mouse_genomes_project X 77293753 77301573 - Las1l protein_coding processed_transcript MGP_CASTEiJ_T0097040.1 MGP_CASTEiJ_G0034886.1 mouse_genomes_project X 77300539 77302320 - Las1l protein_coding processed_transcript MGP_CASTEiJ_T0097041.1 MGP_CASTEiJ_G0034886.1 mouse_genomes_project X 77301054 77305178 - Las1l protein_coding processed_transcript MGP_CASTEiJ_T0097042.1 MGP_CASTEiJ_G0034886.1 mouse_genomes_project X 77303555 77311436 - Las1l protein_coding retained_intron MGP_CASTEiJ_T0015565.1 MGP_CASTEiJ_G0013728.1 mouse_genomes_project X 2620259 2620645 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100236.1 MGP_CASTEiJ_G0037149.1 mouse_genomes_project X 139481207 139481311 + Gm23794 snRNA snRNA MGP_CASTEiJ_T0015824.1 MGP_CASTEiJ_G0013987.1 mouse_genomes_project X 66776352 66776678 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096273.1 MGP_CASTEiJ_G0034680.1 mouse_genomes_project X 35174321 35521230 - MGP_CASTEiJ_P0096273 Gpc3 protein_coding protein_coding MGP_CASTEiJ_T0096274.1 MGP_CASTEiJ_G0034680.1 mouse_genomes_project X 35284111 35521259 - MGP_CASTEiJ_P0096274 Gpc3 protein_coding protein_coding MGP_CASTEiJ_T0096177.1 MGP_CASTEiJ_G0034650.1 mouse_genomes_project X 31037476 31048377 - MGP_CASTEiJ_P0096177 Apln protein_coding protein_coding MGP_CASTEiJ_T0096170.1 MGP_CASTEiJ_G0034649.1 mouse_genomes_project X 30923452 30977983 + MGP_CASTEiJ_P0096170 Ocrl protein_coding protein_coding MGP_CASTEiJ_T0096171.1 MGP_CASTEiJ_G0034649.1 mouse_genomes_project X 30923503 30969386 + MGP_CASTEiJ_P0096171 Ocrl protein_coding protein_coding MGP_CASTEiJ_T0096172.1 MGP_CASTEiJ_G0034649.1 mouse_genomes_project X 30923520 30969370 + Ocrl protein_coding processed_transcript MGP_CASTEiJ_T0096173.1 MGP_CASTEiJ_G0034649.1 mouse_genomes_project X 30923532 30926645 + Ocrl protein_coding retained_intron MGP_CASTEiJ_T0096174.1 MGP_CASTEiJ_G0034649.1 mouse_genomes_project X 30924031 30978545 + MGP_CASTEiJ_P0096174 Ocrl protein_coding protein_coding MGP_CASTEiJ_T0096175.1 MGP_CASTEiJ_G0034649.1 mouse_genomes_project X 30941190 30942329 + Ocrl protein_coding retained_intron MGP_CASTEiJ_T0096176.1 MGP_CASTEiJ_G0034649.1 mouse_genomes_project X 30949394 30960759 + MGP_CASTEiJ_P0096176 Ocrl protein_coding protein_coding MGP_CASTEiJ_T0100188.1 MGP_CASTEiJ_G0037101.1 mouse_genomes_project X 31322431 31322535 + Gm22528 snRNA snRNA MGP_CASTEiJ_T0016065.1 MGP_CASTEiJ_G0014228.1 mouse_genomes_project X 112906071 112907211 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097603.1 MGP_CASTEiJ_G0035055.1 mouse_genomes_project X 113989649 113994225 + MGP_CASTEiJ_P0097603 Armcx5 protein_coding protein_coding MGP_CASTEiJ_T0097608.1 MGP_CASTEiJ_G0035055.1 mouse_genomes_project X 113989651 113992309 + Armcx5 protein_coding retained_intron MGP_CASTEiJ_T0015782.1 MGP_CASTEiJ_G0013945.1 mouse_genomes_project X 56142825 56143675 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096542.1 MGP_CASTEiJ_G0034779.1 mouse_genomes_project X 55308651 55331708 + MGP_CASTEiJ_P0096542 Abcd1 protein_coding protein_coding MGP_CASTEiJ_T0096543.1 MGP_CASTEiJ_G0034779.1 mouse_genomes_project X 55308794 55324540 + MGP_CASTEiJ_P0096543 Abcd1 protein_coding protein_coding MGP_CASTEiJ_T0097682.1 MGP_CASTEiJ_G0035084.1 mouse_genomes_project X 116466128 116467544 - MGP_CASTEiJ_P0097682 Tex13a protein_coding protein_coding MGP_CASTEiJ_T0015648.1 MGP_CASTEiJ_G0013811.1 mouse_genomes_project X 23292742 23293419 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097566.1 MGP_CASTEiJ_G0035040.1 mouse_genomes_project X 112895813 112898590 - MGP_CASTEiJ_P0097566 Armcx6 protein_coding protein_coding MGP_CASTEiJ_T0097567.1 MGP_CASTEiJ_G0035040.1 mouse_genomes_project X 112897228 112898606 - Armcx6 protein_coding processed_transcript MGP_CASTEiJ_T0097568.1 MGP_CASTEiJ_G0035040.1 mouse_genomes_project X 112897408 112898620 - Armcx6 protein_coding processed_transcript MGP_CASTEiJ_T0015860.1 MGP_CASTEiJ_G0014023.1 mouse_genomes_project X 72965194 72966342 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015712.1 MGP_CASTEiJ_G0013875.1 mouse_genomes_project X 39964695 39965376 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015982.1 MGP_CASTEiJ_G0014145.1 mouse_genomes_project X 93566736 93569662 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096620.1 MGP_CASTEiJ_G0034789.1 mouse_genomes_project X 55530501 55539085 - MGP_CASTEiJ_P0096620 Renbp protein_coding protein_coding MGP_CASTEiJ_T0096621.1 MGP_CASTEiJ_G0034789.1 mouse_genomes_project X 55530501 55539027 - MGP_CASTEiJ_P0096621 Renbp protein_coding protein_coding MGP_CASTEiJ_T0096622.1 MGP_CASTEiJ_G0034789.1 mouse_genomes_project X 55530502 55534780 - Renbp protein_coding retained_intron MGP_CASTEiJ_T0096623.1 MGP_CASTEiJ_G0034789.1 mouse_genomes_project X 55530503 55539052 - Renbp protein_coding retained_intron MGP_CASTEiJ_T0096624.1 MGP_CASTEiJ_G0034789.1 mouse_genomes_project X 55530519 55538991 - MGP_CASTEiJ_P0096624 Renbp protein_coding protein_coding MGP_CASTEiJ_T0096625.1 MGP_CASTEiJ_G0034789.1 mouse_genomes_project X 55533641 55537364 - Renbp protein_coding processed_transcript MGP_CASTEiJ_T0096626.1 MGP_CASTEiJ_G0034789.1 mouse_genomes_project X 55534645 55536330 - Renbp protein_coding retained_intron MGP_CASTEiJ_T0096627.1 MGP_CASTEiJ_G0034789.1 mouse_genomes_project X 55536488 55538976 - Renbp protein_coding retained_intron MGP_CASTEiJ_T0096628.1 MGP_CASTEiJ_G0034789.1 mouse_genomes_project X 55537376 55538980 - MGP_CASTEiJ_P0096628 Renbp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096629.1 MGP_CASTEiJ_G0034789.1 mouse_genomes_project X 55537823 55538987 - Renbp protein_coding retained_intron MGP_CASTEiJ_T0016116.1 MGP_CASTEiJ_G0014279.1 mouse_genomes_project X 120387037 120387397 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096337.1 MGP_CASTEiJ_G0034709.1 mouse_genomes_project X 38797918 38811477 + MGP_CASTEiJ_P0096337 Htatsf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0096338.1 MGP_CASTEiJ_G0034709.1 mouse_genomes_project X 38797930 38801552 + MGP_CASTEiJ_P0096338 Htatsf1 protein_coding protein_coding MGP_CASTEiJ_T0096339.1 MGP_CASTEiJ_G0034709.1 mouse_genomes_project X 38797962 38811485 + MGP_CASTEiJ_P0096339 Htatsf1 protein_coding protein_coding MGP_CASTEiJ_T0096340.1 MGP_CASTEiJ_G0034709.1 mouse_genomes_project X 38798245 38801550 + Htatsf1 protein_coding retained_intron MGP_CASTEiJ_T0098240.1 MGP_CASTEiJ_G0035221.1 mouse_genomes_project X 143556171 143716158 + MGP_CASTEiJ_P0098240 Gpm6b protein_coding protein_coding MGP_CASTEiJ_T0098241.1 MGP_CASTEiJ_G0035221.1 mouse_genomes_project X 143556232 143716158 + MGP_CASTEiJ_P0098241 Gpm6b protein_coding protein_coding MGP_CASTEiJ_T0098242.1 MGP_CASTEiJ_G0035221.1 mouse_genomes_project X 143556232 143716158 + MGP_CASTEiJ_P0098242 Gpm6b protein_coding protein_coding MGP_CASTEiJ_T0098243.1 MGP_CASTEiJ_G0035221.1 mouse_genomes_project X 143670982 143716158 + MGP_CASTEiJ_P0098243 Gpm6b protein_coding protein_coding MGP_CASTEiJ_T0098244.1 MGP_CASTEiJ_G0035221.1 mouse_genomes_project X 143670982 143711171 + MGP_CASTEiJ_P0098244 Gpm6b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098245.1 MGP_CASTEiJ_G0035221.1 mouse_genomes_project X 143670982 143711171 + MGP_CASTEiJ_P0098245 Gpm6b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098246.1 MGP_CASTEiJ_G0035221.1 mouse_genomes_project X 143670982 143716158 + MGP_CASTEiJ_P0098246 Gpm6b protein_coding protein_coding MGP_CASTEiJ_T0098247.1 MGP_CASTEiJ_G0035221.1 mouse_genomes_project X 143670982 143716158 + MGP_CASTEiJ_P0098247 Gpm6b protein_coding protein_coding MGP_CASTEiJ_T0098248.1 MGP_CASTEiJ_G0035221.1 mouse_genomes_project X 143670982 143716158 + MGP_CASTEiJ_P0098248 Gpm6b protein_coding protein_coding MGP_CASTEiJ_T0098249.1 MGP_CASTEiJ_G0035221.1 mouse_genomes_project X 143670982 143716158 + MGP_CASTEiJ_P0098249 Gpm6b protein_coding protein_coding MGP_CASTEiJ_T0098250.1 MGP_CASTEiJ_G0035221.1 mouse_genomes_project X 143670982 143716158 + MGP_CASTEiJ_P0098250 Gpm6b protein_coding protein_coding MGP_CASTEiJ_T0098251.1 MGP_CASTEiJ_G0035221.1 mouse_genomes_project X 143671132 143700377 + Gpm6b protein_coding retained_intron MGP_CASTEiJ_T0015775.1 MGP_CASTEiJ_G0013938.1 mouse_genomes_project X 53059810 53060115 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017921.1 MGP_CASTEiJ_G0015110.1 mouse_genomes_project X 114983976 115004282 + BC065397 processed_transcript processed_transcript MGP_CASTEiJ_T0017922.1 MGP_CASTEiJ_G0015110.1 mouse_genomes_project X 114983998 115006053 + BC065397 processed_transcript processed_transcript MGP_CASTEiJ_T0017923.1 MGP_CASTEiJ_G0015110.1 mouse_genomes_project X 114984010 114986743 + BC065397 processed_transcript processed_transcript MGP_CASTEiJ_T0017924.1 MGP_CASTEiJ_G0015110.1 mouse_genomes_project X 114984040 115004260 + BC065397 processed_transcript processed_transcript MGP_CASTEiJ_T0017925.1 MGP_CASTEiJ_G0015110.1 mouse_genomes_project X 114985130 115047575 + BC065397 processed_transcript processed_transcript MGP_CASTEiJ_T0017926.1 MGP_CASTEiJ_G0015110.1 mouse_genomes_project X 114985550 115004297 + BC065397 processed_transcript processed_transcript MGP_CASTEiJ_T0017927.1 MGP_CASTEiJ_G0015110.1 mouse_genomes_project X 115011789 115047584 + BC065397 processed_transcript processed_transcript MGP_CASTEiJ_T0100170.1 MGP_CASTEiJ_G0037083.1 mouse_genomes_project X 4132939 4133098 - Gm25481 snRNA snRNA MGP_CASTEiJ_T0098185.1 MGP_CASTEiJ_G0035206.1 mouse_genomes_project X 141334344 141357414 - MGP_CASTEiJ_P0098185 Zrsr2 protein_coding protein_coding MGP_CASTEiJ_T0098186.1 MGP_CASTEiJ_G0035206.1 mouse_genomes_project X 141337924 141349042 - Zrsr2 protein_coding retained_intron MGP_CASTEiJ_T0098187.1 MGP_CASTEiJ_G0035206.1 mouse_genomes_project X 141338827 141342356 - Zrsr2 protein_coding retained_intron MGP_CASTEiJ_T0098188.1 MGP_CASTEiJ_G0035206.1 mouse_genomes_project X 141347776 141349284 - Zrsr2 protein_coding retained_intron MGP_CASTEiJ_T0098189.1 MGP_CASTEiJ_G0035206.1 mouse_genomes_project X 141349211 141357423 - MGP_CASTEiJ_P0098189 Zrsr2 protein_coding protein_coding MGP_CASTEiJ_T0098190.1 MGP_CASTEiJ_G0035206.1 mouse_genomes_project X 141352419 141356999 - Zrsr2 protein_coding processed_transcript MGP_CASTEiJ_T0098191.1 MGP_CASTEiJ_G0035206.1 mouse_genomes_project X 141352468 141357377 - MGP_CASTEiJ_P0098191 Zrsr2 protein_coding protein_coding MGP_CASTEiJ_T0098192.1 MGP_CASTEiJ_G0035206.1 mouse_genomes_project X 141355303 141357486 - MGP_CASTEiJ_P0098192 Zrsr2 protein_coding protein_coding MGP_CASTEiJ_T0097302.1 MGP_CASTEiJ_G0034959.1 mouse_genomes_project X 86898363 86899273 + MGP_CASTEiJ_P0097302 Cypt2 protein_coding protein_coding MGP_CASTEiJ_T0096944.1 MGP_CASTEiJ_G0034857.1 mouse_genomes_project X 67547113 67551266 + MGP_CASTEiJ_P0096944 Nr0b1 protein_coding protein_coding MGP_CASTEiJ_T0015939.1 MGP_CASTEiJ_G0014102.1 mouse_genomes_project X 84989175 84989741 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100212.1 MGP_CASTEiJ_G0037125.1 mouse_genomes_project X 88018021 88018183 - Gm24622 snRNA snRNA MGP_CASTEiJ_T0015683.1 MGP_CASTEiJ_G0013846.1 mouse_genomes_project X 32186563 32186961 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096433.1 MGP_CASTEiJ_G0034745.1 mouse_genomes_project X 52595862 52702132 + MGP_CASTEiJ_P0096433 Mamld1 protein_coding protein_coding MGP_CASTEiJ_T0096434.1 MGP_CASTEiJ_G0034745.1 mouse_genomes_project X 52595862 52703470 + MGP_CASTEiJ_P0096434 Mamld1 protein_coding protein_coding MGP_CASTEiJ_T0097619.1 MGP_CASTEiJ_G0035060.1 mouse_genomes_project X 114338982 114340632 - MGP_CASTEiJ_P0097619 Bex2 protein_coding protein_coding MGP_CASTEiJ_T0005432.1 MGP_CASTEiJ_G0004587.1 mouse_genomes_project X 20318444 20319596 + Gm15008 antisense antisense MGP_CASTEiJ_T0015592.1 MGP_CASTEiJ_G0013755.1 mouse_genomes_project X 9608579 9609370 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009193.1 MGP_CASTEiJ_G0007390.1 mouse_genomes_project X 127703827 127716512 - lincRNA lincRNA MGP_CASTEiJ_T0009194.1 MGP_CASTEiJ_G0007390.1 mouse_genomes_project X 127704177 127704591 - lincRNA lincRNA MGP_CASTEiJ_T0095603.1 MGP_CASTEiJ_G0034489.1 mouse_genomes_project X 1492269 1542495 - MGP_CASTEiJ_P0095603 Ccnb3 protein_coding protein_coding MGP_CASTEiJ_T0095604.1 MGP_CASTEiJ_G0034489.1 mouse_genomes_project X 1492269 1553316 - MGP_CASTEiJ_P0095604 Ccnb3 protein_coding protein_coding MGP_CASTEiJ_T0096817.1 MGP_CASTEiJ_G0034818.1 mouse_genomes_project X 56767867 56782928 + MGP_CASTEiJ_P0096817 Dkc1 protein_coding protein_coding MGP_CASTEiJ_T0096818.1 MGP_CASTEiJ_G0034818.1 mouse_genomes_project X 56768063 56774572 + MGP_CASTEiJ_P0096818 Dkc1 protein_coding protein_coding MGP_CASTEiJ_T0096819.1 MGP_CASTEiJ_G0034818.1 mouse_genomes_project X 56768096 56770899 + MGP_CASTEiJ_P0096819 Dkc1 protein_coding protein_coding MGP_CASTEiJ_T0096820.1 MGP_CASTEiJ_G0034818.1 mouse_genomes_project X 56768109 56770809 + Dkc1 protein_coding retained_intron MGP_CASTEiJ_T0096821.1 MGP_CASTEiJ_G0034818.1 mouse_genomes_project X 56768111 56770959 + Dkc1 protein_coding processed_transcript MGP_CASTEiJ_T0096822.1 MGP_CASTEiJ_G0034818.1 mouse_genomes_project X 56768125 56774494 + MGP_CASTEiJ_P0096822 Dkc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096823.1 MGP_CASTEiJ_G0034818.1 mouse_genomes_project X 56768554 56770831 + Dkc1 protein_coding retained_intron MGP_CASTEiJ_T0096824.1 MGP_CASTEiJ_G0034818.1 mouse_genomes_project X 56771928 56780374 + Dkc1 protein_coding retained_intron MGP_CASTEiJ_T0096825.1 MGP_CASTEiJ_G0034818.1 mouse_genomes_project X 56772063 56781404 + MGP_CASTEiJ_P0096825 Dkc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0096826.1 MGP_CASTEiJ_G0034818.1 mouse_genomes_project X 56772269 56778881 + Dkc1 protein_coding processed_transcript MGP_CASTEiJ_T0096827.1 MGP_CASTEiJ_G0034818.1 mouse_genomes_project X 56772948 56778929 + Dkc1 protein_coding processed_transcript MGP_CASTEiJ_T0096828.1 MGP_CASTEiJ_G0034818.1 mouse_genomes_project X 56779111 56781437 + Dkc1 protein_coding retained_intron MGP_CASTEiJ_T0016197.1 MGP_CASTEiJ_G0014360.1 mouse_genomes_project X 136418129 136418864 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011443.1 MGP_CASTEiJ_G0009631.1 mouse_genomes_project X 110841005 110841208 + Gm22143 misc_RNA misc_RNA MGP_CASTEiJ_T0095759.1 MGP_CASTEiJ_G0034523.1 mouse_genomes_project X 2713876 2723337 - MGP_CASTEiJ_P0095759 Wdr13 protein_coding protein_coding MGP_CASTEiJ_T0095760.1 MGP_CASTEiJ_G0034523.1 mouse_genomes_project X 2713878 2723387 - MGP_CASTEiJ_P0095760 Wdr13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095761.1 MGP_CASTEiJ_G0034523.1 mouse_genomes_project X 2713899 2723299 - MGP_CASTEiJ_P0095761 Wdr13 protein_coding protein_coding MGP_CASTEiJ_T0095762.1 MGP_CASTEiJ_G0034523.1 mouse_genomes_project X 2715765 2723352 - MGP_CASTEiJ_P0095762 Wdr13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095763.1 MGP_CASTEiJ_G0034523.1 mouse_genomes_project X 2715878 2723349 - MGP_CASTEiJ_P0095763 Wdr13 protein_coding protein_coding MGP_CASTEiJ_T0095764.1 MGP_CASTEiJ_G0034523.1 mouse_genomes_project X 2716171 2719022 - Wdr13 protein_coding retained_intron MGP_CASTEiJ_T0095765.1 MGP_CASTEiJ_G0034523.1 mouse_genomes_project X 2718538 2723348 - Wdr13 protein_coding processed_transcript MGP_CASTEiJ_T0095766.1 MGP_CASTEiJ_G0034523.1 mouse_genomes_project X 2719645 2723374 - MGP_CASTEiJ_P0095766 Wdr13 protein_coding protein_coding MGP_CASTEiJ_T0095767.1 MGP_CASTEiJ_G0034523.1 mouse_genomes_project X 2720222 2723025 - Wdr13 protein_coding retained_intron MGP_CASTEiJ_T0095768.1 MGP_CASTEiJ_G0034523.1 mouse_genomes_project X 2722630 2723421 - Wdr13 protein_coding processed_transcript MGP_CASTEiJ_T0101690.1 MGP_CASTEiJ_G0038514.1 mouse_genomes_project X 36889318 36889554 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0016088.1 MGP_CASTEiJ_G0014251.1 mouse_genomes_project X 115398167 115398924 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097676.1 MGP_CASTEiJ_G0035082.1 mouse_genomes_project X 115382190 115387727 - MGP_CASTEiJ_P0097676 Esx1 protein_coding protein_coding MGP_CASTEiJ_T0097677.1 MGP_CASTEiJ_G0035082.1 mouse_genomes_project X 115382190 115387572 - MGP_CASTEiJ_P0097677 Esx1 protein_coding protein_coding MGP_CASTEiJ_T0097678.1 MGP_CASTEiJ_G0035082.1 mouse_genomes_project X 115384933 115389352 - MGP_CASTEiJ_P0097678 Esx1 protein_coding protein_coding MGP_CASTEiJ_T0096276.1 MGP_CASTEiJ_G0034682.1 mouse_genomes_project X 35840109 35887448 + MGP_CASTEiJ_P0096276 Phf6 protein_coding protein_coding MGP_CASTEiJ_T0096277.1 MGP_CASTEiJ_G0034682.1 mouse_genomes_project X 35840141 35877951 + MGP_CASTEiJ_P0096277 Phf6 protein_coding protein_coding MGP_CASTEiJ_T0096278.1 MGP_CASTEiJ_G0034682.1 mouse_genomes_project X 35854796 35870792 + Phf6 protein_coding processed_transcript MGP_CASTEiJ_T0096279.1 MGP_CASTEiJ_G0034682.1 mouse_genomes_project X 35854798 35870811 + Phf6 protein_coding processed_transcript MGP_CASTEiJ_T0016067.1 MGP_CASTEiJ_G0014230.1 mouse_genomes_project X 112977842 112978705 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010902.1 MGP_CASTEiJ_G0009090.1 mouse_genomes_project X 127928551 127928612 - Mir3620 miRNA miRNA MGP_CASTEiJ_T0097339.1 MGP_CASTEiJ_G0034964.1 mouse_genomes_project X 87382991 87389521 + MGP_CASTEiJ_P0097339 Cox7b protein_coding protein_coding MGP_CASTEiJ_T0097340.1 MGP_CASTEiJ_G0034964.1 mouse_genomes_project X 87383007 87383421 + Cox7b protein_coding processed_transcript MGP_CASTEiJ_T0097341.1 MGP_CASTEiJ_G0034964.1 mouse_genomes_project X 87386461 87389029 + Cox7b protein_coding retained_intron MGP_CASTEiJ_T0097639.1 MGP_CASTEiJ_G0035070.1 mouse_genomes_project X 114973695 114985044 - MGP_CASTEiJ_P0097639 protein_coding protein_coding MGP_CASTEiJ_T0097640.1 MGP_CASTEiJ_G0035070.1 mouse_genomes_project X 114973721 114982642 - MGP_CASTEiJ_P0097640 protein_coding protein_coding MGP_CASTEiJ_T0097641.1 MGP_CASTEiJ_G0035070.1 mouse_genomes_project X 114973723 114985073 - MGP_CASTEiJ_P0097641 protein_coding protein_coding MGP_CASTEiJ_T0097642.1 MGP_CASTEiJ_G0035070.1 mouse_genomes_project X 114973851 114982638 - MGP_CASTEiJ_P0097642 protein_coding protein_coding MGP_CASTEiJ_T0097643.1 MGP_CASTEiJ_G0035070.1 mouse_genomes_project X 114975152 114983813 - MGP_CASTEiJ_P0097643 protein_coding protein_coding MGP_CASTEiJ_T0097644.1 MGP_CASTEiJ_G0035070.1 mouse_genomes_project X 114977747 114983431 - protein_coding processed_transcript MGP_CASTEiJ_T0096064.1 MGP_CASTEiJ_G0034618.1 mouse_genomes_project X 21188506 21191459 - MGP_CASTEiJ_P0096064 Rhox6 protein_coding protein_coding MGP_CASTEiJ_T0097422.1 MGP_CASTEiJ_G0034991.1 mouse_genomes_project X 92682204 92787128 - MGP_CASTEiJ_P0097422 Hdx protein_coding protein_coding MGP_CASTEiJ_T0097613.1 MGP_CASTEiJ_G0035057.1 mouse_genomes_project X 114145856 114151079 + MGP_CASTEiJ_P0097613 Bhlhb9 protein_coding protein_coding MGP_CASTEiJ_T0097614.1 MGP_CASTEiJ_G0035057.1 mouse_genomes_project X 114145858 114149327 + MGP_CASTEiJ_P0097614 Bhlhb9 protein_coding protein_coding MGP_CASTEiJ_T0097615.1 MGP_CASTEiJ_G0035057.1 mouse_genomes_project X 114145858 114151082 + MGP_CASTEiJ_P0097615 Bhlhb9 protein_coding protein_coding MGP_CASTEiJ_T0097616.1 MGP_CASTEiJ_G0035057.1 mouse_genomes_project X 114145988 114147471 + Bhlhb9 protein_coding retained_intron MGP_CASTEiJ_T0017913.1 MGP_CASTEiJ_G0015104.1 mouse_genomes_project X 112826501 112828402 - B230119M05Rik processed_transcript processed_transcript MGP_CASTEiJ_T0101457.1 MGP_CASTEiJ_G0038370.1 mouse_genomes_project X 109072570 109072699 - Gm25170 snoRNA snoRNA MGP_CASTEiJ_T0097525.1 MGP_CASTEiJ_G0035029.1 mouse_genomes_project X 112412411 112424136 + MGP_CASTEiJ_P0097525 Tmem35a protein_coding protein_coding MGP_CASTEiJ_T0016077.1 MGP_CASTEiJ_G0014240.1 mouse_genomes_project X 114715747 114716827 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097156.1 MGP_CASTEiJ_G0034916.1 mouse_genomes_project X 82298856 82429934 - MGP_CASTEiJ_P0097156 Snx12 protein_coding protein_coding MGP_CASTEiJ_T0097157.1 MGP_CASTEiJ_G0034916.1 mouse_genomes_project X 82404106 82429907 - MGP_CASTEiJ_P0097157 Snx12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097158.1 MGP_CASTEiJ_G0034916.1 mouse_genomes_project X 82419032 82429944 - MGP_CASTEiJ_P0097158 Snx12 protein_coding protein_coding MGP_CASTEiJ_T0097159.1 MGP_CASTEiJ_G0034916.1 mouse_genomes_project X 82419032 82429930 - MGP_CASTEiJ_P0097159 Snx12 protein_coding protein_coding MGP_CASTEiJ_T0097160.1 MGP_CASTEiJ_G0034916.1 mouse_genomes_project X 82420612 82421766 - Snx12 protein_coding processed_transcript MGP_CASTEiJ_T0097043.1 MGP_CASTEiJ_G0034887.1 mouse_genomes_project X 77461624 77537769 + MGP_CASTEiJ_P0097043 Msn protein_coding protein_coding MGP_CASTEiJ_T0097044.1 MGP_CASTEiJ_G0034887.1 mouse_genomes_project X 77461639 77523434 + Msn protein_coding processed_transcript MGP_CASTEiJ_T0097045.1 MGP_CASTEiJ_G0034887.1 mouse_genomes_project X 77461679 77521349 + Msn protein_coding processed_transcript MGP_CASTEiJ_T0097046.1 MGP_CASTEiJ_G0034887.1 mouse_genomes_project X 77461727 77535930 + MGP_CASTEiJ_P0097046 Msn protein_coding unknown_likely_coding MGP_CASTEiJ_T0098778.1 MGP_CASTEiJ_G0035709.1 mouse_genomes_project X 102187696 102187817 - Gm25825 scaRNA scaRNA MGP_CASTEiJ_T0096493.1 MGP_CASTEiJ_G0034762.1 mouse_genomes_project X 54434712 54464006 + MGP_CASTEiJ_P0096493 Nsdhl protein_coding protein_coding MGP_CASTEiJ_T0096494.1 MGP_CASTEiJ_G0034762.1 mouse_genomes_project X 54448617 54459070 + Nsdhl protein_coding retained_intron MGP_CASTEiJ_T0016091.1 MGP_CASTEiJ_G0014254.1 mouse_genomes_project X 116335334 116335541 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010834.1 MGP_CASTEiJ_G0009022.1 mouse_genomes_project X 41383300 41383388 - Gm44500 miRNA miRNA MGP_CASTEiJ_T0016063.1 MGP_CASTEiJ_G0014226.1 mouse_genomes_project X 112765593 112766277 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096953.1 MGP_CASTEiJ_G0034863.1 mouse_genomes_project X 72857140 72858175 - MGP_CASTEiJ_P0096953 protein_coding protein_coding MGP_CASTEiJ_T0096293.1 MGP_CASTEiJ_G0034689.1 mouse_genomes_project X 36477969 36480564 + MGP_CASTEiJ_P0096293 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0015998.1 MGP_CASTEiJ_G0014161.1 mouse_genomes_project X 95939168 95939627 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010862.1 MGP_CASTEiJ_G0009050.1 mouse_genomes_project X 55639385 55639456 - Mir5132 miRNA miRNA MGP_CASTEiJ_T0096225.1 MGP_CASTEiJ_G0034664.1 mouse_genomes_project X 32017737 32309967 - MGP_CASTEiJ_P0096225 Enox2 protein_coding protein_coding MGP_CASTEiJ_T0096226.1 MGP_CASTEiJ_G0034664.1 mouse_genomes_project X 32017867 32210450 - MGP_CASTEiJ_P0096226 Enox2 protein_coding protein_coding MGP_CASTEiJ_T0096227.1 MGP_CASTEiJ_G0034664.1 mouse_genomes_project X 32018488 32309997 - MGP_CASTEiJ_P0096227 Enox2 protein_coding protein_coding MGP_CASTEiJ_T0096228.1 MGP_CASTEiJ_G0034664.1 mouse_genomes_project X 32018488 32309997 - MGP_CASTEiJ_P0096228 Enox2 protein_coding protein_coding MGP_CASTEiJ_T0096229.1 MGP_CASTEiJ_G0034664.1 mouse_genomes_project X 32018488 32309997 - MGP_CASTEiJ_P0096229 Enox2 protein_coding protein_coding MGP_CASTEiJ_T0096230.1 MGP_CASTEiJ_G0034664.1 mouse_genomes_project X 32019053 32309997 - MGP_CASTEiJ_P0096230 Enox2 protein_coding protein_coding MGP_CASTEiJ_T0096231.1 MGP_CASTEiJ_G0034664.1 mouse_genomes_project X 32075451 32310014 - Enox2 protein_coding processed_transcript MGP_CASTEiJ_T0096232.1 MGP_CASTEiJ_G0034664.1 mouse_genomes_project X 32078687 32309967 - Enox2 protein_coding processed_transcript MGP_CASTEiJ_T0096233.1 MGP_CASTEiJ_G0034664.1 mouse_genomes_project X 32083848 32309997 - Enox2 protein_coding processed_transcript MGP_CASTEiJ_T0096146.1 MGP_CASTEiJ_G0034641.1 mouse_genomes_project X 25713975 25715809 + MGP_CASTEiJ_P0096146 Gm43337 protein_coding protein_coding MGP_CASTEiJ_T0016139.1 MGP_CASTEiJ_G0014302.1 mouse_genomes_project X 123872483 123872948 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098692.1 MGP_CASTEiJ_G0035623.1 mouse_genomes_project X 52678749 52678867 + n-R5s8 rRNA rRNA MGP_CASTEiJ_T0010858.1 MGP_CASTEiJ_G0009046.1 mouse_genomes_project X 53820870 53820955 - Mir452 miRNA miRNA MGP_CASTEiJ_T0010832.1 MGP_CASTEiJ_G0009020.1 mouse_genomes_project X 38310880 38310943 - Mir5116 miRNA miRNA MGP_CASTEiJ_T0096521.1 MGP_CASTEiJ_G0034774.1 mouse_genomes_project X 55083189 55153140 + MGP_CASTEiJ_P0096521 Atp2b3 protein_coding protein_coding MGP_CASTEiJ_T0096522.1 MGP_CASTEiJ_G0034774.1 mouse_genomes_project X 55083189 55140373 + MGP_CASTEiJ_P0096522 Atp2b3 protein_coding protein_coding MGP_CASTEiJ_T0096523.1 MGP_CASTEiJ_G0034774.1 mouse_genomes_project X 55083189 55153140 + MGP_CASTEiJ_P0096523 Atp2b3 protein_coding protein_coding MGP_CASTEiJ_T0009126.1 MGP_CASTEiJ_G0007346.1 mouse_genomes_project X 5290050 5300571 - Gm10489 lincRNA lincRNA MGP_CASTEiJ_T0097408.1 MGP_CASTEiJ_G0034987.1 mouse_genomes_project X 92071074 92074002 + MGP_CASTEiJ_P0097408 Pou3f4 protein_coding protein_coding MGP_CASTEiJ_T0015599.1 MGP_CASTEiJ_G0013762.1 mouse_genomes_project X 10907740 10907993 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016181.1 MGP_CASTEiJ_G0014344.1 mouse_genomes_project X 134016248 134016717 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0096301.1 MGP_CASTEiJ_G0034697.1 mouse_genomes_project X 36889322 36889554 - protein_coding transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0095987.1 MGP_CASTEiJ_G0034584.1 mouse_genomes_project X 15499169 15512714 - MGP_CASTEiJ_P0095987 Zfp300 protein_coding protein_coding MGP_CASTEiJ_T0095988.1 MGP_CASTEiJ_G0034584.1 mouse_genomes_project X 15504039 15512727 - MGP_CASTEiJ_P0095988 Zfp300 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095989.1 MGP_CASTEiJ_G0034584.1 mouse_genomes_project X 15506882 15512471 - Zfp300 protein_coding retained_intron MGP_CASTEiJ_T0095990.1 MGP_CASTEiJ_G0034584.1 mouse_genomes_project X 15507190 15513013 - Zfp300 protein_coding processed_transcript MGP_CASTEiJ_T0015957.1 MGP_CASTEiJ_G0014120.1 mouse_genomes_project X 88064321 88064828 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100209.1 MGP_CASTEiJ_G0037122.1 mouse_genomes_project X 86422636 86422747 - Gm22090 snRNA snRNA MGP_CASTEiJ_T0010849.1 MGP_CASTEiJ_G0009037.1 mouse_genomes_project X 48439880 48439955 - Mir470 miRNA miRNA MGP_CASTEiJ_T0005472.1 MGP_CASTEiJ_G0004619.1 mouse_genomes_project X 144720206 144723154 + Gm15239 antisense antisense MGP_CASTEiJ_T0015621.1 MGP_CASTEiJ_G0013784.1 mouse_genomes_project X 16053316 16053697 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097744.1 MGP_CASTEiJ_G0035103.1 mouse_genomes_project X 118921015 118924163 - Tsc22d3 protein_coding processed_transcript MGP_CASTEiJ_T0097745.1 MGP_CASTEiJ_G0035103.1 mouse_genomes_project X 118921015 118924683 - MGP_CASTEiJ_P0097745 Tsc22d3 protein_coding protein_coding MGP_CASTEiJ_T0097746.1 MGP_CASTEiJ_G0035103.1 mouse_genomes_project X 118921024 118924596 - Tsc22d3 protein_coding retained_intron MGP_CASTEiJ_T0097747.1 MGP_CASTEiJ_G0035103.1 mouse_genomes_project X 118921741 118981423 - MGP_CASTEiJ_P0097747 Tsc22d3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0097748.1 MGP_CASTEiJ_G0035103.1 mouse_genomes_project X 118921836 118929860 - MGP_CASTEiJ_P0097748 Tsc22d3 protein_coding protein_coding MGP_CASTEiJ_T0097749.1 MGP_CASTEiJ_G0035103.1 mouse_genomes_project X 118924597 118930051 - Tsc22d3 protein_coding processed_transcript MGP_CASTEiJ_T0096086.1 MGP_CASTEiJ_G0034628.1 mouse_genomes_project X 21715130 21717570 + MGP_CASTEiJ_P0096086 BC049702 protein_coding protein_coding MGP_CASTEiJ_T0097465.1 MGP_CASTEiJ_G0035011.1 mouse_genomes_project X 101186659 101805556 + MGP_CASTEiJ_P0097465 Pcdh11x protein_coding protein_coding MGP_CASTEiJ_T0097466.1 MGP_CASTEiJ_G0035011.1 mouse_genomes_project X 101186659 101805556 + MGP_CASTEiJ_P0097466 Pcdh11x protein_coding protein_coding MGP_CASTEiJ_T0097467.1 MGP_CASTEiJ_G0035011.1 mouse_genomes_project X 101186727 101188872 + Pcdh11x protein_coding retained_intron MGP_CASTEiJ_T0097468.1 MGP_CASTEiJ_G0035011.1 mouse_genomes_project X 101186727 101809660 + MGP_CASTEiJ_P0097468 Pcdh11x protein_coding protein_coding MGP_CASTEiJ_T0097469.1 MGP_CASTEiJ_G0035011.1 mouse_genomes_project X 101186803 101805556 + MGP_CASTEiJ_P0097469 Pcdh11x protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0097470.1 MGP_CASTEiJ_G0035011.1 mouse_genomes_project X 101250162 101809648 + MGP_CASTEiJ_P0097470 Pcdh11x protein_coding protein_coding MGP_CASTEiJ_T0097471.1 MGP_CASTEiJ_G0035011.1 mouse_genomes_project X 101250973 101286751 + MGP_CASTEiJ_P0097471 Pcdh11x protein_coding protein_coding MGP_CASTEiJ_T0097472.1 MGP_CASTEiJ_G0035011.1 mouse_genomes_project X 101278753 101805556 + MGP_CASTEiJ_P0097472 Pcdh11x protein_coding protein_coding MGP_CASTEiJ_T0097473.1 MGP_CASTEiJ_G0035011.1 mouse_genomes_project X 101278753 101805554 + MGP_CASTEiJ_P0097473 Pcdh11x protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0016144.1 MGP_CASTEiJ_G0014307.1 mouse_genomes_project X 124323457 124323824 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016108.1 MGP_CASTEiJ_G0014271.1 mouse_genomes_project X 120013856 120014156 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015625.1 MGP_CASTEiJ_G0013788.1 mouse_genomes_project X 16846713 16847256 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0097542.1 MGP_CASTEiJ_G0035035.1 mouse_genomes_project X 112674555 112720475 - MGP_CASTEiJ_P0097542 Btk protein_coding protein_coding MGP_CASTEiJ_T0097543.1 MGP_CASTEiJ_G0035035.1 mouse_genomes_project X 112674589 112720463 - MGP_CASTEiJ_P0097543 Btk protein_coding protein_coding MGP_CASTEiJ_T0097544.1 MGP_CASTEiJ_G0035035.1 mouse_genomes_project X 112681968 112720475 - Btk protein_coding retained_intron MGP_CASTEiJ_T0097545.1 MGP_CASTEiJ_G0035035.1 mouse_genomes_project X 112706079 112719808 - Btk protein_coding processed_transcript MGP_CASTEiJ_T0097546.1 MGP_CASTEiJ_G0035035.1 mouse_genomes_project X 112710309 112720904 - Btk protein_coding processed_transcript MGP_CASTEiJ_T0096375.1 MGP_CASTEiJ_G0034719.1 mouse_genomes_project X 41680765 41714873 + MGP_CASTEiJ_P0096375 F9 protein_coding protein_coding MGP_CASTEiJ_T0016103.1 MGP_CASTEiJ_G0014266.1 mouse_genomes_project X 119220036 119220622 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015745.1 MGP_CASTEiJ_G0013908.1 mouse_genomes_project X 45707076 45707429 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085190.1 MGP_CASTEiJ_G0031558.1 mouse_genomes_project 7 92220930 92289086 + Pak1 protein_coding retained_intron MGP_CASTEiJ_T0085191.1 MGP_CASTEiJ_G0031558.1 mouse_genomes_project 7 92220930 92352216 + MGP_CASTEiJ_P0085191 Pak1 protein_coding protein_coding MGP_CASTEiJ_T0085192.1 MGP_CASTEiJ_G0031558.1 mouse_genomes_project 7 92263438 92301341 + MGP_CASTEiJ_P0085192 Pak1 protein_coding protein_coding MGP_CASTEiJ_T0085193.1 MGP_CASTEiJ_G0031558.1 mouse_genomes_project 7 92275347 92352714 + MGP_CASTEiJ_P0085193 Pak1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085194.1 MGP_CASTEiJ_G0031558.1 mouse_genomes_project 7 92275347 92352714 + MGP_CASTEiJ_P0085194 Pak1 protein_coding protein_coding MGP_CASTEiJ_T0085195.1 MGP_CASTEiJ_G0031558.1 mouse_genomes_project 7 92331511 92351616 + Pak1 protein_coding retained_intron MGP_CASTEiJ_T0015241.1 MGP_CASTEiJ_G0013404.1 mouse_genomes_project 7 68006914 68007761 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084817.1 MGP_CASTEiJ_G0031449.1 mouse_genomes_project 7 73923335 74033438 - MGP_CASTEiJ_P0084817 Crtc3 protein_coding protein_coding MGP_CASTEiJ_T0084818.1 MGP_CASTEiJ_G0031449.1 mouse_genomes_project 7 73929509 73947568 - MGP_CASTEiJ_P0084818 Crtc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084819.1 MGP_CASTEiJ_G0031449.1 mouse_genomes_project 7 73932493 73937113 - Crtc3 protein_coding retained_intron MGP_CASTEiJ_T0084820.1 MGP_CASTEiJ_G0031449.1 mouse_genomes_project 7 73932555 73967185 - MGP_CASTEiJ_P0084820 Crtc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084821.1 MGP_CASTEiJ_G0031449.1 mouse_genomes_project 7 73955779 73967266 - Crtc3 protein_coding retained_intron MGP_CASTEiJ_T0084822.1 MGP_CASTEiJ_G0031449.1 mouse_genomes_project 7 74016541 74033438 - Crtc3 protein_coding retained_intron MGP_CASTEiJ_T0086915.1 MGP_CASTEiJ_G0032068.1 mouse_genomes_project 7 123363454 123379229 + Srcap protein_coding retained_intron MGP_CASTEiJ_T0086916.1 MGP_CASTEiJ_G0032068.1 mouse_genomes_project 7 123363454 123383219 + MGP_CASTEiJ_P0086916 Srcap protein_coding protein_coding MGP_CASTEiJ_T0086917.1 MGP_CASTEiJ_G0032068.1 mouse_genomes_project 7 123363473 123375034 + MGP_CASTEiJ_P0086917 Srcap protein_coding protein_coding MGP_CASTEiJ_T0086918.1 MGP_CASTEiJ_G0032068.1 mouse_genomes_project 7 123363498 123377522 + MGP_CASTEiJ_P0086918 Srcap protein_coding protein_coding MGP_CASTEiJ_T0086919.1 MGP_CASTEiJ_G0032068.1 mouse_genomes_project 7 123363583 123366882 + Srcap protein_coding processed_transcript MGP_CASTEiJ_T0086920.1 MGP_CASTEiJ_G0032068.1 mouse_genomes_project 7 123363772 123367477 + Srcap protein_coding processed_transcript MGP_CASTEiJ_T0086921.1 MGP_CASTEiJ_G0032068.1 mouse_genomes_project 7 123363936 123393133 + MGP_CASTEiJ_P0086921 Srcap protein_coding protein_coding MGP_CASTEiJ_T0086922.1 MGP_CASTEiJ_G0032068.1 mouse_genomes_project 7 123364463 123390273 + Srcap protein_coding retained_intron MGP_CASTEiJ_T0086923.1 MGP_CASTEiJ_G0032068.1 mouse_genomes_project 7 123364463 123390273 + MGP_CASTEiJ_P0086923 Srcap protein_coding protein_coding MGP_CASTEiJ_T0086924.1 MGP_CASTEiJ_G0032068.1 mouse_genomes_project 7 123364489 123415996 + MGP_CASTEiJ_P0086924 Srcap protein_coding protein_coding MGP_CASTEiJ_T0086925.1 MGP_CASTEiJ_G0032068.1 mouse_genomes_project 7 123367473 123372168 + Srcap protein_coding retained_intron MGP_CASTEiJ_T0086926.1 MGP_CASTEiJ_G0032068.1 mouse_genomes_project 7 123367628 123415584 + MGP_CASTEiJ_P0086926 Srcap protein_coding protein_coding MGP_CASTEiJ_T0086927.1 MGP_CASTEiJ_G0032068.1 mouse_genomes_project 7 123367628 123415584 + MGP_CASTEiJ_P0086927 Srcap protein_coding protein_coding MGP_CASTEiJ_T0086929.1 MGP_CASTEiJ_G0032068.1 mouse_genomes_project 7 123387656 123389689 + Srcap protein_coding retained_intron MGP_CASTEiJ_T0010567.1 MGP_CASTEiJ_G0008755.1 mouse_genomes_project 7 50380263 50380365 + Mir6389 miRNA miRNA MGP_CASTEiJ_T0008776.1 MGP_CASTEiJ_G0007083.1 mouse_genomes_project 7 120193761 120211761 - Gm15339 lincRNA lincRNA MGP_CASTEiJ_T0015145.1 MGP_CASTEiJ_G0013308.1 mouse_genomes_project 7 12482957 12483449 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085053.1 MGP_CASTEiJ_G0031528.1 mouse_genomes_project 7 84068058 84095546 - MGP_CASTEiJ_P0085053 Eed protein_coding protein_coding MGP_CASTEiJ_T0085054.1 MGP_CASTEiJ_G0031528.1 mouse_genomes_project 7 84068127 84095155 - MGP_CASTEiJ_P0085054 Eed protein_coding unknown_likely_coding MGP_CASTEiJ_T0085055.1 MGP_CASTEiJ_G0031528.1 mouse_genomes_project 7 84091197 84095122 - Eed protein_coding processed_transcript MGP_CASTEiJ_T0087385.1 MGP_CASTEiJ_G0032159.1 mouse_genomes_project 7 131964841 131968044 + MGP_CASTEiJ_P0087385 protein_coding protein_coding MGP_CASTEiJ_T0087672.1 MGP_CASTEiJ_G0032247.1 mouse_genomes_project 7 138247257 138255001 - MGP_CASTEiJ_P0087672 Cdhr5 protein_coding protein_coding MGP_CASTEiJ_T0087673.1 MGP_CASTEiJ_G0032247.1 mouse_genomes_project 7 138247257 138255001 - MGP_CASTEiJ_P0087673 Cdhr5 protein_coding protein_coding MGP_CASTEiJ_T0085079.1 MGP_CASTEiJ_G0031536.1 mouse_genomes_project 7 84602953 84610808 - MGP_CASTEiJ_P0085079 Tmem126b protein_coding protein_coding MGP_CASTEiJ_T0085080.1 MGP_CASTEiJ_G0031536.1 mouse_genomes_project 7 84604750 84610802 - Tmem126b protein_coding retained_intron MGP_CASTEiJ_T0085578.1 MGP_CASTEiJ_G0031647.1 mouse_genomes_project 7 97434805 97435753 + MGP_CASTEiJ_P0085578 Olfr555 protein_coding protein_coding MGP_CASTEiJ_T0082089.1 MGP_CASTEiJ_G0030805.1 mouse_genomes_project 7 13859827 13878927 - MGP_CASTEiJ_P0082089 Gm4969 protein_coding protein_coding MGP_CASTEiJ_T0082090.1 MGP_CASTEiJ_G0030805.1 mouse_genomes_project 7 13859827 13875061 - MGP_CASTEiJ_P0082090 Gm4969 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082091.1 MGP_CASTEiJ_G0030805.1 mouse_genomes_project 7 13862332 13878900 - MGP_CASTEiJ_P0082091 Gm4969 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0008800.1 MGP_CASTEiJ_G0007097.1 mouse_genomes_project 7 123282229 123287135 + Gm45184 lincRNA lincRNA MGP_CASTEiJ_T0084572.1 MGP_CASTEiJ_G0031406.1 mouse_genomes_project 7 68561914 68866921 + MGP_CASTEiJ_P0084572 Akap13 protein_coding protein_coding MGP_CASTEiJ_T0084573.1 MGP_CASTEiJ_G0031406.1 mouse_genomes_project 7 68643318 68866926 + MGP_CASTEiJ_P0084573 Akap13 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084536.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66420788 66540118 - MGP_CASTEiJ_P0084536 Chd2 protein_coding protein_coding MGP_CASTEiJ_T0084537.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66420844 66464738 - MGP_CASTEiJ_P0084537 Chd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084538.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66424131 66442050 - MGP_CASTEiJ_P0084538 Chd2 protein_coding protein_coding MGP_CASTEiJ_T0084539.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66444063 66450437 - MGP_CASTEiJ_P0084539 Chd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084540.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66446664 66456585 - Chd2 protein_coding processed_transcript MGP_CASTEiJ_T0084541.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66470840 66476865 - Chd2 protein_coding processed_transcript MGP_CASTEiJ_T0084542.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66470846 66476867 - MGP_CASTEiJ_P0084542 Chd2 protein_coding protein_coding MGP_CASTEiJ_T0084543.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66470847 66474971 - Chd2 protein_coding retained_intron MGP_CASTEiJ_T0084544.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66492669 66497088 - MGP_CASTEiJ_P0084544 Chd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084545.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66494608 66497007 - MGP_CASTEiJ_P0084545 Chd2 protein_coding protein_coding MGP_CASTEiJ_T0084546.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66495946 66540117 - MGP_CASTEiJ_P0084546 Chd2 protein_coding protein_coding MGP_CASTEiJ_T0084547.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66496908 66498531 - Chd2 protein_coding retained_intron MGP_CASTEiJ_T0084548.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66502861 66535974 - MGP_CASTEiJ_P0084548 Chd2 protein_coding protein_coding MGP_CASTEiJ_T0084549.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66502891 66540108 - MGP_CASTEiJ_P0084549 Chd2 protein_coding protein_coding MGP_CASTEiJ_T0084550.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66536442 66540202 - Chd2 protein_coding retained_intron MGP_CASTEiJ_T0084551.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66537706 66540118 - Chd2 protein_coding processed_transcript MGP_CASTEiJ_T0084552.1 MGP_CASTEiJ_G0031401.1 mouse_genomes_project 7 66538171 66539897 - Chd2 protein_coding processed_transcript MGP_CASTEiJ_T0082480.1 MGP_CASTEiJ_G0030911.1 mouse_genomes_project 7 17718803 17732721 - MGP_CASTEiJ_P0082480 Cxcl17 protein_coding protein_coding MGP_CASTEiJ_T0082481.1 MGP_CASTEiJ_G0030911.1 mouse_genomes_project 7 17718803 17732721 - MGP_CASTEiJ_P0082481 Cxcl17 protein_coding protein_coding MGP_CASTEiJ_T0008777.1 MGP_CASTEiJ_G0007084.1 mouse_genomes_project 7 120342114 120434478 - 3100003L05Rik lincRNA lincRNA MGP_CASTEiJ_T0084089.1 MGP_CASTEiJ_G0031297.1 mouse_genomes_project 7 39007106 39009730 + MGP_CASTEiJ_P0084089 Myod1 protein_coding protein_coding MGP_CASTEiJ_T0017678.1 MGP_CASTEiJ_G0015013.1 mouse_genomes_project 7 130544616 130547878 - A130023I24Rik processed_transcript sense_intronic MGP_CASTEiJ_T0017679.1 MGP_CASTEiJ_G0015013.1 mouse_genomes_project 7 130544695 130546475 - A130023I24Rik processed_transcript retained_intron MGP_CASTEiJ_T0083337.1 MGP_CASTEiJ_G0031112.1 mouse_genomes_project 7 25398350 25410005 - MGP_CASTEiJ_P0083337 Pdcd2l protein_coding protein_coding MGP_CASTEiJ_T0083338.1 MGP_CASTEiJ_G0031112.1 mouse_genomes_project 7 25398484 25409955 - MGP_CASTEiJ_P0083338 Pdcd2l protein_coding protein_coding MGP_CASTEiJ_T0083339.1 MGP_CASTEiJ_G0031112.1 mouse_genomes_project 7 25402825 25406158 - Pdcd2l protein_coding retained_intron MGP_CASTEiJ_T0083340.1 MGP_CASTEiJ_G0031112.1 mouse_genomes_project 7 25406219 25409493 - Pdcd2l protein_coding processed_transcript MGP_CASTEiJ_T0081621.1 MGP_CASTEiJ_G0030638.1 mouse_genomes_project 7 1899747 1910777 - MGP_CASTEiJ_P0081621 Sbk2 protein_coding protein_coding MGP_CASTEiJ_T0081622.1 MGP_CASTEiJ_G0030638.1 mouse_genomes_project 7 1900691 1910780 - MGP_CASTEiJ_P0081622 Sbk2 protein_coding protein_coding MGP_CASTEiJ_T0081623.1 MGP_CASTEiJ_G0030638.1 mouse_genomes_project 7 1901132 1910786 - MGP_CASTEiJ_P0081623 Sbk2 protein_coding protein_coding MGP_CASTEiJ_T0081624.1 MGP_CASTEiJ_G0030638.1 mouse_genomes_project 7 1904825 1910822 - Sbk2 protein_coding processed_transcript MGP_CASTEiJ_T0084378.1 MGP_CASTEiJ_G0031370.1 mouse_genomes_project 7 56949660 56965400 - MGP_CASTEiJ_P0084378 Mphosph10 protein_coding protein_coding MGP_CASTEiJ_T0084379.1 MGP_CASTEiJ_G0031370.1 mouse_genomes_project 7 56950408 56957675 - Mphosph10 protein_coding retained_intron MGP_CASTEiJ_T0084380.1 MGP_CASTEiJ_G0031370.1 mouse_genomes_project 7 56961133 56965372 - Mphosph10 protein_coding retained_intron MGP_CASTEiJ_T0085612.1 MGP_CASTEiJ_G0031678.1 mouse_genomes_project 7 98076926 98077865 + MGP_CASTEiJ_P0085612 protein_coding protein_coding MGP_CASTEiJ_T0010624.1 MGP_CASTEiJ_G0008812.1 mouse_genomes_project 7 138196807 138196917 - Mir210 miRNA miRNA MGP_CASTEiJ_T0083217.1 MGP_CASTEiJ_G0031090.1 mouse_genomes_project 7 23644494 23654452 - MGP_CASTEiJ_P0083217 protein_coding protein_coding MGP_CASTEiJ_T0083218.1 MGP_CASTEiJ_G0031090.1 mouse_genomes_project 7 23644607 23653899 - protein_coding processed_transcript MGP_CASTEiJ_T0083219.1 MGP_CASTEiJ_G0031090.1 mouse_genomes_project 7 23646034 23653962 - MGP_CASTEiJ_P0083219 protein_coding protein_coding MGP_CASTEiJ_T0083220.1 MGP_CASTEiJ_G0031090.1 mouse_genomes_project 7 23646040 23654452 - protein_coding processed_transcript MGP_CASTEiJ_T0083221.1 MGP_CASTEiJ_G0031090.1 mouse_genomes_project 7 23646040 23654452 - MGP_CASTEiJ_P0083221 protein_coding protein_coding MGP_CASTEiJ_T0083222.1 MGP_CASTEiJ_G0031090.1 mouse_genomes_project 7 23646040 23654452 - MGP_CASTEiJ_P0083222 protein_coding protein_coding MGP_CASTEiJ_T0083223.1 MGP_CASTEiJ_G0031090.1 mouse_genomes_project 7 23646040 23654452 - MGP_CASTEiJ_P0083223 protein_coding protein_coding MGP_CASTEiJ_T0083224.1 MGP_CASTEiJ_G0031090.1 mouse_genomes_project 7 23646040 23654452 - MGP_CASTEiJ_P0083224 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083225.1 MGP_CASTEiJ_G0031090.1 mouse_genomes_project 7 23646211 23653173 - protein_coding retained_intron MGP_CASTEiJ_T0083226.1 MGP_CASTEiJ_G0031090.1 mouse_genomes_project 7 23646301 23653629 - MGP_CASTEiJ_P0083226 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083227.1 MGP_CASTEiJ_G0031090.1 mouse_genomes_project 7 23653649 23654373 - protein_coding processed_transcript MGP_CASTEiJ_T0083964.1 MGP_CASTEiJ_G0031263.1 mouse_genomes_project 7 38068014 38068870 - Ppp1r15a protein_coding processed_transcript MGP_CASTEiJ_T0083965.1 MGP_CASTEiJ_G0031263.1 mouse_genomes_project 7 38068015 38071255 - MGP_CASTEiJ_P0083965 Ppp1r15a protein_coding protein_coding MGP_CASTEiJ_T0083966.1 MGP_CASTEiJ_G0031263.1 mouse_genomes_project 7 38068020 38071133 - Ppp1r15a protein_coding retained_intron MGP_CASTEiJ_T0083967.1 MGP_CASTEiJ_G0031263.1 mouse_genomes_project 7 38068020 38071205 - MGP_CASTEiJ_P0083967 Ppp1r15a protein_coding protein_coding MGP_CASTEiJ_T0086710.1 MGP_CASTEiJ_G0032027.1 mouse_genomes_project 7 122579352 122583373 - MGP_CASTEiJ_P0086710 Aldoa protein_coding protein_coding MGP_CASTEiJ_T0086711.1 MGP_CASTEiJ_G0032027.1 mouse_genomes_project 7 122579353 122584556 - MGP_CASTEiJ_P0086711 Aldoa protein_coding protein_coding MGP_CASTEiJ_T0086712.1 MGP_CASTEiJ_G0032027.1 mouse_genomes_project 7 122579354 122583260 - MGP_CASTEiJ_P0086712 Aldoa protein_coding protein_coding MGP_CASTEiJ_T0086713.1 MGP_CASTEiJ_G0032027.1 mouse_genomes_project 7 122580030 122582401 - Aldoa protein_coding processed_transcript MGP_CASTEiJ_T0086714.1 MGP_CASTEiJ_G0032027.1 mouse_genomes_project 7 122580067 122582426 - Aldoa protein_coding retained_intron MGP_CASTEiJ_T0086715.1 MGP_CASTEiJ_G0032027.1 mouse_genomes_project 7 122580067 122581870 - Aldoa protein_coding retained_intron MGP_CASTEiJ_T0086716.1 MGP_CASTEiJ_G0032027.1 mouse_genomes_project 7 122580157 122584155 - MGP_CASTEiJ_P0086716 Aldoa protein_coding protein_coding MGP_CASTEiJ_T0086717.1 MGP_CASTEiJ_G0032027.1 mouse_genomes_project 7 122580389 122583112 - MGP_CASTEiJ_P0086717 Aldoa protein_coding protein_coding MGP_CASTEiJ_T0086718.1 MGP_CASTEiJ_G0032027.1 mouse_genomes_project 7 122580600 122583289 - Aldoa protein_coding retained_intron MGP_CASTEiJ_T0086719.1 MGP_CASTEiJ_G0032027.1 mouse_genomes_project 7 122580786 122583228 - MGP_CASTEiJ_P0086719 Aldoa protein_coding protein_coding MGP_CASTEiJ_T0086720.1 MGP_CASTEiJ_G0032027.1 mouse_genomes_project 7 122580836 122584145 - MGP_CASTEiJ_P0086720 Aldoa protein_coding protein_coding MGP_CASTEiJ_T0086721.1 MGP_CASTEiJ_G0032027.1 mouse_genomes_project 7 122580958 122584860 - MGP_CASTEiJ_P0086721 Aldoa protein_coding protein_coding MGP_CASTEiJ_T0005082.1 MGP_CASTEiJ_G0004332.1 mouse_genomes_project 7 50172513 50195306 + Gm9962 antisense antisense MGP_CASTEiJ_T0082722.1 MGP_CASTEiJ_G0030974.1 mouse_genomes_project 7 20633625 20643352 + MGP_CASTEiJ_P0082722 Fbl protein_coding protein_coding MGP_CASTEiJ_T0102574.1 MGP_CASTEiJ_G0039298.1 mouse_genomes_project 7 80536684 80537596 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010563.1 MGP_CASTEiJ_G0008751.1 mouse_genomes_project 7 37661938 37661997 + Mir7055 miRNA miRNA MGP_CASTEiJ_T0102484.1 MGP_CASTEiJ_G0039209.1 mouse_genomes_project 7 10039073 10039360 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0086696.1 MGP_CASTEiJ_G0032025.1 mouse_genomes_project 7 122565579 122569645 + MGP_CASTEiJ_P0086696 Tbx6 protein_coding protein_coding MGP_CASTEiJ_T0086697.1 MGP_CASTEiJ_G0032025.1 mouse_genomes_project 7 122565579 122569444 + MGP_CASTEiJ_P0086697 Tbx6 protein_coding protein_coding MGP_CASTEiJ_T0005050.1 MGP_CASTEiJ_G0004310.1 mouse_genomes_project 7 23653547 23655356 + Gm17077 antisense antisense MGP_CASTEiJ_T0083410.1 MGP_CASTEiJ_G0031125.1 mouse_genomes_project 7 26655925 26722691 + MGP_CASTEiJ_P0083410 Rhpn2 protein_coding protein_coding MGP_CASTEiJ_T0083411.1 MGP_CASTEiJ_G0031125.1 mouse_genomes_project 7 26656085 26722687 + MGP_CASTEiJ_P0083411 Rhpn2 protein_coding protein_coding MGP_CASTEiJ_T0083412.1 MGP_CASTEiJ_G0031125.1 mouse_genomes_project 7 26709840 26712192 + Rhpn2 protein_coding retained_intron MGP_CASTEiJ_T0083413.1 MGP_CASTEiJ_G0031125.1 mouse_genomes_project 7 26713117 26715674 + Rhpn2 protein_coding retained_intron MGP_CASTEiJ_T0084992.1 MGP_CASTEiJ_G0031498.1 mouse_genomes_project 7 80369764 80370691 - MGP_CASTEiJ_P0084992 Olfr309 protein_coding protein_coding MGP_CASTEiJ_T0084993.1 MGP_CASTEiJ_G0031498.1 mouse_genomes_project 7 80369764 80377371 - MGP_CASTEiJ_P0084993 Olfr309 protein_coding protein_coding MGP_CASTEiJ_T0086384.1 MGP_CASTEiJ_G0031972.1 mouse_genomes_project 7 117485217 117488097 - Cog7 protein_coding retained_intron MGP_CASTEiJ_T0086385.1 MGP_CASTEiJ_G0031972.1 mouse_genomes_project 7 117485529 117596330 - MGP_CASTEiJ_P0086385 Cog7 protein_coding protein_coding MGP_CASTEiJ_T0086387.1 MGP_CASTEiJ_G0031972.1 mouse_genomes_project 7 117533215 117596330 - MGP_CASTEiJ_P0086387 Cog7 protein_coding protein_coding MGP_CASTEiJ_T0086388.1 MGP_CASTEiJ_G0031972.1 mouse_genomes_project 7 117539238 117596313 - Cog7 protein_coding retained_intron MGP_CASTEiJ_T0010601.1 MGP_CASTEiJ_G0008789.1 mouse_genomes_project 7 95532415 95532519 - Mir3102 miRNA miRNA MGP_CASTEiJ_T0002127.1 MGP_CASTEiJ_G0002047.1 mouse_genomes_project 7 11855921 11856831 + TEC TEC MGP_CASTEiJ_T0084988.1 MGP_CASTEiJ_G0031494.1 mouse_genomes_project 7 78932220 78977087 - MGP_CASTEiJ_P0084988 protein_coding protein_coding MGP_CASTEiJ_T0083826.1 MGP_CASTEiJ_G0031224.1 mouse_genomes_project 7 37441872 37452253 - MGP_CASTEiJ_P0083826 protein_coding protein_coding MGP_CASTEiJ_T0086230.1 MGP_CASTEiJ_G0031929.1 mouse_genomes_project 7 114171353 114198861 + MGP_CASTEiJ_P0086230 Ccp110 protein_coding protein_coding MGP_CASTEiJ_T0086231.1 MGP_CASTEiJ_G0031929.1 mouse_genomes_project 7 114174218 114198858 + MGP_CASTEiJ_P0086231 Ccp110 protein_coding protein_coding MGP_CASTEiJ_T0086232.1 MGP_CASTEiJ_G0031929.1 mouse_genomes_project 7 114182208 114198853 + Ccp110 protein_coding retained_intron MGP_CASTEiJ_T0086233.1 MGP_CASTEiJ_G0031929.1 mouse_genomes_project 7 114187725 114198861 + Ccp110 protein_coding retained_intron MGP_CASTEiJ_T0086234.1 MGP_CASTEiJ_G0031929.1 mouse_genomes_project 7 114192065 114194307 + Ccp110 protein_coding retained_intron MGP_CASTEiJ_T0083643.1 MGP_CASTEiJ_G0031186.1 mouse_genomes_project 7 36203529 36303471 + MGP_CASTEiJ_P0083643 protein_coding protein_coding MGP_CASTEiJ_T0085302.1 MGP_CASTEiJ_G0031588.1 mouse_genomes_project 7 94572576 94601001 + MGP_CASTEiJ_P0085302 Chrdl2 protein_coding protein_coding MGP_CASTEiJ_T0085303.1 MGP_CASTEiJ_G0031588.1 mouse_genomes_project 7 94576093 94601003 + MGP_CASTEiJ_P0085303 Chrdl2 protein_coding protein_coding MGP_CASTEiJ_T0085304.1 MGP_CASTEiJ_G0031588.1 mouse_genomes_project 7 94588309 94601001 + MGP_CASTEiJ_P0085304 Chrdl2 protein_coding protein_coding MGP_CASTEiJ_T0084521.1 MGP_CASTEiJ_G0031396.1 mouse_genomes_project 7 61461609 61473822 - MGP_CASTEiJ_P0084521 Arrdc4 protein_coding protein_coding MGP_CASTEiJ_T0084522.1 MGP_CASTEiJ_G0031396.1 mouse_genomes_project 7 61466067 61469475 - Arrdc4 protein_coding retained_intron MGP_CASTEiJ_T0084523.1 MGP_CASTEiJ_G0031396.1 mouse_genomes_project 7 61466159 61473769 - MGP_CASTEiJ_P0084523 Arrdc4 protein_coding protein_coding MGP_CASTEiJ_T0102453.1 MGP_CASTEiJ_G0039178.1 mouse_genomes_project 7 5894787 5895107 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102474.1 MGP_CASTEiJ_G0039199.1 mouse_genomes_project 7 9520419 9520939 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0083825.1 MGP_CASTEiJ_G0031223.1 mouse_genomes_project 7 37422196 37439960 - MGP_CASTEiJ_P0083825 Cpt1c protein_coding protein_coding MGP_CASTEiJ_T0082584.1 MGP_CASTEiJ_G0030940.1 mouse_genomes_project 7 19523901 19540609 - MGP_CASTEiJ_P0082584 Gm21983 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0008787.1 MGP_CASTEiJ_G0007091.1 mouse_genomes_project 7 122515180 122516727 + 4930448A20Rik lincRNA lincRNA MGP_CASTEiJ_T0083482.1 MGP_CASTEiJ_G0031137.1 mouse_genomes_project 7 28961051 28968866 - MGP_CASTEiJ_P0083482 Zfp536 protein_coding protein_coding MGP_CASTEiJ_T0083483.1 MGP_CASTEiJ_G0031137.1 mouse_genomes_project 7 28967989 29289538 - MGP_CASTEiJ_P0083483 Zfp536 protein_coding protein_coding MGP_CASTEiJ_T0083484.1 MGP_CASTEiJ_G0031137.1 mouse_genomes_project 7 28967994 29289878 - MGP_CASTEiJ_P0083484 Zfp536 protein_coding protein_coding MGP_CASTEiJ_T0083485.1 MGP_CASTEiJ_G0031137.1 mouse_genomes_project 7 28968007 29290896 - MGP_CASTEiJ_P0083485 Zfp536 protein_coding protein_coding MGP_CASTEiJ_T0083486.1 MGP_CASTEiJ_G0031137.1 mouse_genomes_project 7 28968062 29293961 - MGP_CASTEiJ_P0083486 Zfp536 protein_coding protein_coding MGP_CASTEiJ_T0083487.1 MGP_CASTEiJ_G0031137.1 mouse_genomes_project 7 29059287 29290698 - MGP_CASTEiJ_P0083487 Zfp536 protein_coding protein_coding MGP_CASTEiJ_T0083488.1 MGP_CASTEiJ_G0031137.1 mouse_genomes_project 7 29059417 29294727 - MGP_CASTEiJ_P0083488 Zfp536 protein_coding protein_coding MGP_CASTEiJ_T0083489.1 MGP_CASTEiJ_G0031137.1 mouse_genomes_project 7 29224195 29294663 - Zfp536 protein_coding processed_transcript MGP_CASTEiJ_T0083490.1 MGP_CASTEiJ_G0031137.1 mouse_genomes_project 7 29230400 29294648 - Zfp536 protein_coding retained_intron MGP_CASTEiJ_T0083491.1 MGP_CASTEiJ_G0031137.1 mouse_genomes_project 7 29292309 29294669 - Zfp536 protein_coding retained_intron MGP_CASTEiJ_T0100026.1 MGP_CASTEiJ_G0036939.1 mouse_genomes_project 7 99221650 99221750 - Gm24783 snRNA snRNA MGP_CASTEiJ_T0101239.1 MGP_CASTEiJ_G0038152.1 mouse_genomes_project 7 50944209 50944341 - Gm26288 snoRNA snoRNA MGP_CASTEiJ_T0081781.1 MGP_CASTEiJ_G0030717.1 mouse_genomes_project 7 8110519 8116067 + MGP_CASTEiJ_P0081781 Zfp446 protein_coding protein_coding MGP_CASTEiJ_T0081782.1 MGP_CASTEiJ_G0030717.1 mouse_genomes_project 7 8110519 8116979 + MGP_CASTEiJ_P0081782 Zfp446 protein_coding protein_coding MGP_CASTEiJ_T0081783.1 MGP_CASTEiJ_G0030717.1 mouse_genomes_project 7 8110519 8116067 + MGP_CASTEiJ_P0081783 Zfp446 protein_coding protein_coding MGP_CASTEiJ_T0081784.1 MGP_CASTEiJ_G0030717.1 mouse_genomes_project 7 8110564 8114134 + Zfp446 protein_coding retained_intron MGP_CASTEiJ_T0081785.1 MGP_CASTEiJ_G0030717.1 mouse_genomes_project 7 8110911 8116985 + MGP_CASTEiJ_P0081785 Zfp446 protein_coding protein_coding MGP_CASTEiJ_T0081786.1 MGP_CASTEiJ_G0030717.1 mouse_genomes_project 7 8112194 8117011 + Zfp446 protein_coding retained_intron MGP_CASTEiJ_T0010630.1 MGP_CASTEiJ_G0008818.1 mouse_genomes_project 7 141077994 141078088 + Mir6404 miRNA miRNA MGP_CASTEiJ_T0082569.1 MGP_CASTEiJ_G0030934.1 mouse_genomes_project 7 19097528 19112006 + MGP_CASTEiJ_P0082569 protein_coding protein_coding MGP_CASTEiJ_T0082570.1 MGP_CASTEiJ_G0030934.1 mouse_genomes_project 7 19106155 19106546 + protein_coding retained_intron MGP_CASTEiJ_T0101819.1 MGP_CASTEiJ_G0038581.1 mouse_genomes_project 7 11400158 11410138 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101820.1 MGP_CASTEiJ_G0038581.1 mouse_genomes_project 7 11400542 11403004 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0081845.1 MGP_CASTEiJ_G0030731.1 mouse_genomes_project 7 8534141 8544860 + MGP_CASTEiJ_P0081845 Cabp5 protein_coding protein_coding MGP_CASTEiJ_T0081846.1 MGP_CASTEiJ_G0030731.1 mouse_genomes_project 7 8534304 8542295 + MGP_CASTEiJ_P0081846 Cabp5 protein_coding protein_coding MGP_CASTEiJ_T0081847.1 MGP_CASTEiJ_G0030731.1 mouse_genomes_project 7 8534317 8541546 + MGP_CASTEiJ_P0081847 Cabp5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086115.1 MGP_CASTEiJ_G0031910.1 mouse_genomes_project 7 109871247 109876110 - MGP_CASTEiJ_P0086115 Calca protein_coding protein_coding MGP_CASTEiJ_T0086116.1 MGP_CASTEiJ_G0031910.1 mouse_genomes_project 7 109871337 109872424 - Calca protein_coding retained_intron MGP_CASTEiJ_T0086117.1 MGP_CASTEiJ_G0031910.1 mouse_genomes_project 7 109872323 109876060 - MGP_CASTEiJ_P0086117 Calca protein_coding protein_coding MGP_CASTEiJ_T0086118.1 MGP_CASTEiJ_G0031910.1 mouse_genomes_project 7 109873040 109876065 - MGP_CASTEiJ_P0086118 Calca protein_coding protein_coding MGP_CASTEiJ_T0086119.1 MGP_CASTEiJ_G0031910.1 mouse_genomes_project 7 109873157 109876048 - MGP_CASTEiJ_P0086119 Calca protein_coding protein_coding MGP_CASTEiJ_T0086120.1 MGP_CASTEiJ_G0031910.1 mouse_genomes_project 7 109874087 109876059 - MGP_CASTEiJ_P0086120 Calca protein_coding protein_coding MGP_CASTEiJ_T0086121.1 MGP_CASTEiJ_G0031910.1 mouse_genomes_project 7 109874118 109876024 - MGP_CASTEiJ_P0086121 Calca protein_coding protein_coding MGP_CASTEiJ_T0101227.1 MGP_CASTEiJ_G0038140.1 mouse_genomes_project 7 26511836 26511962 + Gm24505 snoRNA snoRNA MGP_CASTEiJ_T0017587.1 MGP_CASTEiJ_G0014974.1 mouse_genomes_project 7 19619449 19629552 + Gm44641 processed_transcript processed_transcript MGP_CASTEiJ_T0101252.1 MGP_CASTEiJ_G0038165.1 mouse_genomes_project 7 62772036 62772165 - Gm24120 snoRNA snoRNA MGP_CASTEiJ_T0083567.1 MGP_CASTEiJ_G0031158.1 mouse_genomes_project 7 35601059 35607204 + MGP_CASTEiJ_P0083567 Lim2 protein_coding protein_coding MGP_CASTEiJ_T0081890.1 MGP_CASTEiJ_G0030751.1 mouse_genomes_project 7 10826050 10827680 + Kptn protein_coding retained_intron MGP_CASTEiJ_T0081891.1 MGP_CASTEiJ_G0030751.1 mouse_genomes_project 7 10826050 10835432 + MGP_CASTEiJ_P0081891 Kptn protein_coding protein_coding MGP_CASTEiJ_T0081892.1 MGP_CASTEiJ_G0030751.1 mouse_genomes_project 7 10826084 10827128 + Kptn protein_coding retained_intron MGP_CASTEiJ_T0081893.1 MGP_CASTEiJ_G0030751.1 mouse_genomes_project 7 10826374 10831766 + Kptn protein_coding retained_intron MGP_CASTEiJ_T0081894.1 MGP_CASTEiJ_G0030751.1 mouse_genomes_project 7 10826606 10827119 + Kptn protein_coding retained_intron MGP_CASTEiJ_T0081895.1 MGP_CASTEiJ_G0030751.1 mouse_genomes_project 7 10830720 10831729 + Kptn protein_coding retained_intron MGP_CASTEiJ_T0081896.1 MGP_CASTEiJ_G0030751.1 mouse_genomes_project 7 10830787 10831908 + Kptn protein_coding retained_intron MGP_CASTEiJ_T0081897.1 MGP_CASTEiJ_G0030751.1 mouse_genomes_project 7 10833318 10835280 + Kptn protein_coding retained_intron MGP_CASTEiJ_T0082096.1 MGP_CASTEiJ_G0030808.1 mouse_genomes_project 7 13910158 13914368 + MGP_CASTEiJ_P0082096 Snrpd2 protein_coding protein_coding MGP_CASTEiJ_T0082097.1 MGP_CASTEiJ_G0030808.1 mouse_genomes_project 7 13910295 13911526 + Snrpd2 protein_coding retained_intron MGP_CASTEiJ_T0102505.1 MGP_CASTEiJ_G0039229.1 mouse_genomes_project 7 24976197 24977962 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008642.1 MGP_CASTEiJ_G0006994.1 mouse_genomes_project 7 36911317 36912219 + Gm45123 lincRNA lincRNA MGP_CASTEiJ_T0081729.1 MGP_CASTEiJ_G0030691.1 mouse_genomes_project 7 5926771 5974571 + MGP_CASTEiJ_P0081729 Nlrp4b protein_coding protein_coding MGP_CASTEiJ_T0081730.1 MGP_CASTEiJ_G0030691.1 mouse_genomes_project 7 5926799 5974581 + MGP_CASTEiJ_P0081730 Nlrp4b protein_coding protein_coding MGP_CASTEiJ_T0081731.1 MGP_CASTEiJ_G0030691.1 mouse_genomes_project 7 5953012 5970459 + MGP_CASTEiJ_P0081731 Nlrp4b protein_coding protein_coding MGP_CASTEiJ_T0102502.1 MGP_CASTEiJ_G0039226.1 mouse_genomes_project 7 24787700 24788969 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0081380.1 MGP_CASTEiJ_G0030594.1 mouse_genomes_project 7 501414 504324 + MGP_CASTEiJ_P0081380 Ndufa3 protein_coding protein_coding MGP_CASTEiJ_T0081381.1 MGP_CASTEiJ_G0030594.1 mouse_genomes_project 7 501421 504146 + Ndufa3 protein_coding retained_intron MGP_CASTEiJ_T0081382.1 MGP_CASTEiJ_G0030594.1 mouse_genomes_project 7 501426 501747 + Ndufa3 protein_coding retained_intron MGP_CASTEiJ_T0081383.1 MGP_CASTEiJ_G0030594.1 mouse_genomes_project 7 501427 504122 + MGP_CASTEiJ_P0081383 Ndufa3 protein_coding protein_coding MGP_CASTEiJ_T0081384.1 MGP_CASTEiJ_G0030594.1 mouse_genomes_project 7 501432 504157 + MGP_CASTEiJ_P0081384 Ndufa3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081385.1 MGP_CASTEiJ_G0030594.1 mouse_genomes_project 7 501658 504079 + MGP_CASTEiJ_P0081385 Ndufa3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0101280.1 MGP_CASTEiJ_G0038193.1 mouse_genomes_project 7 131669904 131670037 - Gm24581 snoRNA snoRNA MGP_CASTEiJ_T0085138.1 MGP_CASTEiJ_G0031548.1 mouse_genomes_project 7 91726841 91747373 + MGP_CASTEiJ_P0085138 Kctd21 protein_coding protein_coding MGP_CASTEiJ_T0087250.1 MGP_CASTEiJ_G0032130.1 mouse_genomes_project 7 127499828 127510295 + MGP_CASTEiJ_P0087250 Pstk protein_coding protein_coding MGP_CASTEiJ_T0087251.1 MGP_CASTEiJ_G0032130.1 mouse_genomes_project 7 127499833 127510292 + MGP_CASTEiJ_P0087251 Pstk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087252.1 MGP_CASTEiJ_G0032130.1 mouse_genomes_project 7 127499844 127502980 + Pstk protein_coding processed_transcript MGP_CASTEiJ_T0087253.1 MGP_CASTEiJ_G0032130.1 mouse_genomes_project 7 127501749 127510289 + Pstk protein_coding retained_intron MGP_CASTEiJ_T0087254.1 MGP_CASTEiJ_G0032130.1 mouse_genomes_project 7 127506389 127510292 + Pstk protein_coding processed_transcript MGP_CASTEiJ_T0087255.1 MGP_CASTEiJ_G0032130.1 mouse_genomes_project 7 127506701 127510183 + Pstk protein_coding retained_intron MGP_CASTEiJ_T0087256.1 MGP_CASTEiJ_G0032130.1 mouse_genomes_project 7 127506941 127510288 + Pstk protein_coding processed_transcript MGP_CASTEiJ_T0086317.1 MGP_CASTEiJ_G0031950.1 mouse_genomes_project 7 115649136 115663677 - MGP_CASTEiJ_P0086317 Zp2 protein_coding protein_coding MGP_CASTEiJ_T0082050.1 MGP_CASTEiJ_G0030797.1 mouse_genomes_project 7 13743959 13754355 + MGP_CASTEiJ_P0082050 Mypop protein_coding protein_coding MGP_CASTEiJ_T0082051.1 MGP_CASTEiJ_G0030797.1 mouse_genomes_project 7 13744034 13754357 + MGP_CASTEiJ_P0082051 Mypop protein_coding protein_coding MGP_CASTEiJ_T0082052.1 MGP_CASTEiJ_G0030797.1 mouse_genomes_project 7 13744686 13745818 + Mypop protein_coding retained_intron MGP_CASTEiJ_T0087396.1 MGP_CASTEiJ_G0032166.1 mouse_genomes_project 7 134072073 134112987 - 9430038I01Rik protein_coding processed_transcript MGP_CASTEiJ_T0087397.1 MGP_CASTEiJ_G0032166.1 mouse_genomes_project 7 134072073 134112993 - MGP_CASTEiJ_P0087397 9430038I01Rik protein_coding protein_coding MGP_CASTEiJ_T0087398.1 MGP_CASTEiJ_G0032166.1 mouse_genomes_project 7 134072635 134112966 - MGP_CASTEiJ_P0087398 9430038I01Rik protein_coding protein_coding MGP_CASTEiJ_T0087399.1 MGP_CASTEiJ_G0032166.1 mouse_genomes_project 7 134081111 134112987 - 9430038I01Rik protein_coding retained_intron MGP_CASTEiJ_T0087400.1 MGP_CASTEiJ_G0032166.1 mouse_genomes_project 7 134081143 134112963 - MGP_CASTEiJ_P0087400 9430038I01Rik protein_coding protein_coding MGP_CASTEiJ_T0008685.1 MGP_CASTEiJ_G0007027.1 mouse_genomes_project 7 66180214 66212724 - Gm30075 lincRNA lincRNA MGP_CASTEiJ_T0008753.1 MGP_CASTEiJ_G0007070.1 mouse_genomes_project 7 104995092 105005655 - lincRNA lincRNA MGP_CASTEiJ_T0008754.1 MGP_CASTEiJ_G0007070.1 mouse_genomes_project 7 104995120 104995950 - lincRNA lincRNA MGP_CASTEiJ_T0008755.1 MGP_CASTEiJ_G0007070.1 mouse_genomes_project 7 104998616 105005640 - lincRNA lincRNA MGP_CASTEiJ_T0082499.1 MGP_CASTEiJ_G0030917.1 mouse_genomes_project 7 17930519 17932319 - MGP_CASTEiJ_P0082499 Bckdha protein_coding protein_coding MGP_CASTEiJ_T0082500.1 MGP_CASTEiJ_G0030917.1 mouse_genomes_project 7 17930519 17960731 - MGP_CASTEiJ_P0082500 Bckdha protein_coding protein_coding MGP_CASTEiJ_T0084156.1 MGP_CASTEiJ_G0031313.1 mouse_genomes_project 7 39778677 39835839 - MGP_CASTEiJ_P0084156 Ptpn5 protein_coding protein_coding MGP_CASTEiJ_T0084157.1 MGP_CASTEiJ_G0031313.1 mouse_genomes_project 7 39778681 39834833 - MGP_CASTEiJ_P0084157 Ptpn5 protein_coding protein_coding MGP_CASTEiJ_T0087912.1 MGP_CASTEiJ_G0032285.1 mouse_genomes_project 7 139920245 139935941 + MGP_CASTEiJ_P0087912 protein_coding protein_coding MGP_CASTEiJ_T0087913.1 MGP_CASTEiJ_G0032285.1 mouse_genomes_project 7 139933344 139935140 + protein_coding processed_transcript MGP_CASTEiJ_T0015275.1 MGP_CASTEiJ_G0013438.1 mouse_genomes_project 7 92886827 92887141 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0086101.1 MGP_CASTEiJ_G0031906.1 mouse_genomes_project 7 109446177 109486929 - MGP_CASTEiJ_P0086101 Copb1 protein_coding protein_coding MGP_CASTEiJ_T0084040.1 MGP_CASTEiJ_G0031284.1 mouse_genomes_project 7 38422493 38428060 - MGP_CASTEiJ_P0084040 Grwd1 protein_coding protein_coding MGP_CASTEiJ_T0084041.1 MGP_CASTEiJ_G0031284.1 mouse_genomes_project 7 38422496 38428047 - MGP_CASTEiJ_P0084041 Grwd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084042.1 MGP_CASTEiJ_G0031284.1 mouse_genomes_project 7 38422498 38428215 - MGP_CASTEiJ_P0084042 Grwd1 protein_coding protein_coding MGP_CASTEiJ_T0084043.1 MGP_CASTEiJ_G0031284.1 mouse_genomes_project 7 38423329 38428152 - MGP_CASTEiJ_P0084043 Grwd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087598.1 MGP_CASTEiJ_G0032230.1 mouse_genomes_project 7 137886780 137889300 - MGP_CASTEiJ_P0087598 Ifitm2 protein_coding protein_coding MGP_CASTEiJ_T0088028.1 MGP_CASTEiJ_G0032310.1 mouse_genomes_project 7 141773339 141934626 - MGP_CASTEiJ_P0088028 Ano1 protein_coding protein_coding MGP_CASTEiJ_T0088029.1 MGP_CASTEiJ_G0032310.1 mouse_genomes_project 7 141773339 141871020 - MGP_CASTEiJ_P0088029 Ano1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088030.1 MGP_CASTEiJ_G0032310.1 mouse_genomes_project 7 141773348 141934674 - MGP_CASTEiJ_P0088030 Ano1 protein_coding protein_coding MGP_CASTEiJ_T0088031.1 MGP_CASTEiJ_G0032310.1 mouse_genomes_project 7 141773348 141934697 - MGP_CASTEiJ_P0088031 Ano1 protein_coding protein_coding MGP_CASTEiJ_T0088032.1 MGP_CASTEiJ_G0032310.1 mouse_genomes_project 7 141780355 141793405 - Ano1 protein_coding retained_intron MGP_CASTEiJ_T0088033.1 MGP_CASTEiJ_G0032310.1 mouse_genomes_project 7 141806702 141861559 - MGP_CASTEiJ_P0088033 Ano1 protein_coding protein_coding MGP_CASTEiJ_T0088034.1 MGP_CASTEiJ_G0032310.1 mouse_genomes_project 7 141841931 141947976 - MGP_CASTEiJ_P0088034 Ano1 protein_coding protein_coding MGP_CASTEiJ_T0088035.1 MGP_CASTEiJ_G0032310.1 mouse_genomes_project 7 141845464 141861556 - Ano1 protein_coding retained_intron MGP_CASTEiJ_T0088036.1 MGP_CASTEiJ_G0032310.1 mouse_genomes_project 7 141846970 141871093 - MGP_CASTEiJ_P0088036 Ano1 protein_coding protein_coding MGP_CASTEiJ_T0082894.1 MGP_CASTEiJ_G0031015.1 mouse_genomes_project 7 21767431 21778084 - MGP_CASTEiJ_P0082894 Kcnk6 protein_coding protein_coding MGP_CASTEiJ_T0082895.1 MGP_CASTEiJ_G0031015.1 mouse_genomes_project 7 21770486 21778073 - MGP_CASTEiJ_P0082895 Kcnk6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0081655.1 MGP_CASTEiJ_G0030653.1 mouse_genomes_project 7 2085469 2097383 - MGP_CASTEiJ_P0081655 Rasl2-9 protein_coding protein_coding MGP_CASTEiJ_T0086829.1 MGP_CASTEiJ_G0032047.1 mouse_genomes_project 7 122891660 122894283 + MGP_CASTEiJ_P0086829 AI467606 protein_coding protein_coding MGP_CASTEiJ_T0086830.1 MGP_CASTEiJ_G0032047.1 mouse_genomes_project 7 122891725 122893296 + MGP_CASTEiJ_P0086830 AI467606 protein_coding protein_coding MGP_CASTEiJ_T0081883.1 MGP_CASTEiJ_G0030750.1 mouse_genomes_project 7 10804636 10824125 + MGP_CASTEiJ_P0081883 Napa protein_coding protein_coding MGP_CASTEiJ_T0081884.1 MGP_CASTEiJ_G0030750.1 mouse_genomes_project 7 10804786 10819695 + Napa protein_coding processed_transcript MGP_CASTEiJ_T0081885.1 MGP_CASTEiJ_G0030750.1 mouse_genomes_project 7 10804810 10819294 + Napa protein_coding retained_intron MGP_CASTEiJ_T0081886.1 MGP_CASTEiJ_G0030750.1 mouse_genomes_project 7 10804816 10815469 + Napa protein_coding processed_transcript MGP_CASTEiJ_T0081887.1 MGP_CASTEiJ_G0030750.1 mouse_genomes_project 7 10815210 10820384 + Napa protein_coding retained_intron MGP_CASTEiJ_T0081888.1 MGP_CASTEiJ_G0030750.1 mouse_genomes_project 7 10819803 10822709 + Napa protein_coding retained_intron MGP_CASTEiJ_T0081889.1 MGP_CASTEiJ_G0030750.1 mouse_genomes_project 7 10821257 10822889 + Napa protein_coding processed_transcript MGP_CASTEiJ_T0005049.1 MGP_CASTEiJ_G0004309.1 mouse_genomes_project 7 23556014 23556615 + Gm29439 antisense antisense MGP_CASTEiJ_T0015318.1 MGP_CASTEiJ_G0013481.1 mouse_genomes_project 7 123901467 123902249 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015189.1 MGP_CASTEiJ_G0013352.1 mouse_genomes_project 7 31253526 31253993 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082285.1 MGP_CASTEiJ_G0030867.1 mouse_genomes_project 7 16430294 16437275 + MGP_CASTEiJ_P0082285 Zfp93 protein_coding protein_coding MGP_CASTEiJ_T0087167.1 MGP_CASTEiJ_G0032115.1 mouse_genomes_project 7 125223282 125365271 + MGP_CASTEiJ_P0087167 Plpp4 protein_coding protein_coding MGP_CASTEiJ_T0087168.1 MGP_CASTEiJ_G0032115.1 mouse_genomes_project 7 125223289 125293939 + Plpp4 protein_coding retained_intron MGP_CASTEiJ_T0087169.1 MGP_CASTEiJ_G0032115.1 mouse_genomes_project 7 125223298 125276569 + Plpp4 protein_coding processed_transcript MGP_CASTEiJ_T0087170.1 MGP_CASTEiJ_G0032115.1 mouse_genomes_project 7 125223300 125365166 + MGP_CASTEiJ_P0087170 Plpp4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087171.1 MGP_CASTEiJ_G0032115.1 mouse_genomes_project 7 125223306 125364878 + MGP_CASTEiJ_P0087171 Plpp4 protein_coding protein_coding MGP_CASTEiJ_T0100018.1 MGP_CASTEiJ_G0036931.1 mouse_genomes_project 7 77740067 77740225 + Gm22177 snRNA snRNA MGP_CASTEiJ_T0081357.1 MGP_CASTEiJ_G0030588.1 mouse_genomes_project 7 194407 210551 + Prkcg protein_coding processed_transcript MGP_CASTEiJ_T0081362.1 MGP_CASTEiJ_G0030588.1 mouse_genomes_project 7 209761 239155 + MGP_CASTEiJ_P0081362 Prkcg protein_coding protein_coding MGP_CASTEiJ_T0081363.1 MGP_CASTEiJ_G0030588.1 mouse_genomes_project 7 209884 238421 + MGP_CASTEiJ_P0081363 Prkcg protein_coding protein_coding MGP_CASTEiJ_T0081364.1 MGP_CASTEiJ_G0030588.1 mouse_genomes_project 7 211507 226932 + MGP_CASTEiJ_P0081364 Prkcg protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081365.1 MGP_CASTEiJ_G0030588.1 mouse_genomes_project 7 236891 238074 + Prkcg protein_coding retained_intron MGP_CASTEiJ_T0082110.1 MGP_CASTEiJ_G0030811.1 mouse_genomes_project 7 13984295 13995968 + MGP_CASTEiJ_P0082110 Gpr4 protein_coding protein_coding MGP_CASTEiJ_T0084847.1 MGP_CASTEiJ_G0031453.1 mouse_genomes_project 7 74276315 74278464 - Nmb protein_coding retained_intron MGP_CASTEiJ_T0084848.1 MGP_CASTEiJ_G0031453.1 mouse_genomes_project 7 74276316 74279157 - MGP_CASTEiJ_P0084848 Nmb protein_coding protein_coding MGP_CASTEiJ_T0084849.1 MGP_CASTEiJ_G0031453.1 mouse_genomes_project 7 74276322 74278445 - Nmb protein_coding retained_intron MGP_CASTEiJ_T0084850.1 MGP_CASTEiJ_G0031453.1 mouse_genomes_project 7 74276322 74279141 - MGP_CASTEiJ_P0084850 Nmb protein_coding protein_coding MGP_CASTEiJ_T0085381.1 MGP_CASTEiJ_G0031604.1 mouse_genomes_project 7 95491447 95512232 - MGP_CASTEiJ_P0085381 Relt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085382.1 MGP_CASTEiJ_G0031604.1 mouse_genomes_project 7 95492003 95512053 - MGP_CASTEiJ_P0085382 Relt protein_coding protein_coding MGP_CASTEiJ_T0085383.1 MGP_CASTEiJ_G0031604.1 mouse_genomes_project 7 95499914 95505117 - MGP_CASTEiJ_P0085383 Relt protein_coding protein_coding MGP_CASTEiJ_T0085384.1 MGP_CASTEiJ_G0031604.1 mouse_genomes_project 7 95499914 95504244 - MGP_CASTEiJ_P0085384 Relt protein_coding protein_coding MGP_CASTEiJ_T0085385.1 MGP_CASTEiJ_G0031604.1 mouse_genomes_project 7 95499924 95511984 - MGP_CASTEiJ_P0085385 Relt protein_coding protein_coding MGP_CASTEiJ_T0085386.1 MGP_CASTEiJ_G0031604.1 mouse_genomes_project 7 95501871 95512224 - MGP_CASTEiJ_P0085386 Relt protein_coding protein_coding MGP_CASTEiJ_T0008699.1 MGP_CASTEiJ_G0007038.1 mouse_genomes_project 7 68142343 68182284 + Gm44904 lincRNA lincRNA MGP_CASTEiJ_T0087772.1 MGP_CASTEiJ_G0032262.1 mouse_genomes_project 7 138470214 138473318 - MGP_CASTEiJ_P0087772 Polr2l protein_coding protein_coding MGP_CASTEiJ_T0101827.1 MGP_CASTEiJ_G0038585.1 mouse_genomes_project 7 31023870 31063226 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101828.1 MGP_CASTEiJ_G0038585.1 mouse_genomes_project 7 31043111 31060639 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0084164.1 MGP_CASTEiJ_G0031318.1 mouse_genomes_project 7 40791637 40792692 - MGP_CASTEiJ_P0084164 Mrgprx1 protein_coding protein_coding MGP_CASTEiJ_T0086944.1 MGP_CASTEiJ_G0032072.1 mouse_genomes_project 7 123438290 123444503 - MGP_CASTEiJ_P0086944 Ccdc189 protein_coding protein_coding MGP_CASTEiJ_T0086945.1 MGP_CASTEiJ_G0032072.1 mouse_genomes_project 7 123439267 123442248 - MGP_CASTEiJ_P0086945 Ccdc189 protein_coding protein_coding MGP_CASTEiJ_T0086946.1 MGP_CASTEiJ_G0032072.1 mouse_genomes_project 7 123439294 123441630 - Ccdc189 protein_coding retained_intron MGP_CASTEiJ_T0086947.1 MGP_CASTEiJ_G0032072.1 mouse_genomes_project 7 123441120 123444077 - Ccdc189 protein_coding retained_intron MGP_CASTEiJ_T0086948.1 MGP_CASTEiJ_G0032072.1 mouse_genomes_project 7 123442971 123444288 - Ccdc189 protein_coding retained_intron MGP_CASTEiJ_T0087130.1 MGP_CASTEiJ_G0032109.1 mouse_genomes_project 7 124277998 124329379 - MGP_CASTEiJ_P0087130 Rgs10 protein_coding protein_coding MGP_CASTEiJ_T0087131.1 MGP_CASTEiJ_G0032109.1 mouse_genomes_project 7 124278262 124300961 - Rgs10 protein_coding processed_transcript MGP_CASTEiJ_T0087132.1 MGP_CASTEiJ_G0032109.1 mouse_genomes_project 7 124278378 124284515 - Rgs10 protein_coding processed_transcript MGP_CASTEiJ_T0087133.1 MGP_CASTEiJ_G0032109.1 mouse_genomes_project 7 124294773 124313983 - Rgs10 protein_coding retained_intron MGP_CASTEiJ_T0087134.1 MGP_CASTEiJ_G0032109.1 mouse_genomes_project 7 124312413 124329369 - MGP_CASTEiJ_P0087134 Rgs10 protein_coding protein_coding MGP_CASTEiJ_T0087135.1 MGP_CASTEiJ_G0032109.1 mouse_genomes_project 7 124312684 124329964 - MGP_CASTEiJ_P0087135 Rgs10 protein_coding protein_coding MGP_CASTEiJ_T0005040.1 MGP_CASTEiJ_G0004302.1 mouse_genomes_project 7 21727987 21729219 + 1110035H17Rik antisense antisense MGP_CASTEiJ_T0005041.1 MGP_CASTEiJ_G0004302.1 mouse_genomes_project 7 21727987 21729217 + 1110035H17Rik antisense pseudogene MGP_CASTEiJ_T0101268.1 MGP_CASTEiJ_G0038181.1 mouse_genomes_project 7 105049680 105049863 + Snora23 snoRNA snoRNA MGP_CASTEiJ_T0085870.1 MGP_CASTEiJ_G0031824.1 mouse_genomes_project 7 102524354 102679196 + MGP_CASTEiJ_P0085870 Ppfibp2 protein_coding protein_coding MGP_CASTEiJ_T0085871.1 MGP_CASTEiJ_G0031824.1 mouse_genomes_project 7 102535917 102682887 + MGP_CASTEiJ_P0085871 Ppfibp2 protein_coding protein_coding MGP_CASTEiJ_T0085637.1 MGP_CASTEiJ_G0031703.1 mouse_genomes_project 7 98608859 98611841 - MGP_CASTEiJ_P0085637 Olfr69 protein_coding protein_coding MGP_CASTEiJ_T0102490.1 MGP_CASTEiJ_G0039215.1 mouse_genomes_project 7 11775451 11775812 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0084533.1 MGP_CASTEiJ_G0031400.1 mouse_genomes_project 7 66364484 66413169 + MGP_CASTEiJ_P0084533 Rgma protein_coding protein_coding MGP_CASTEiJ_T0084534.1 MGP_CASTEiJ_G0031400.1 mouse_genomes_project 7 66379805 66402780 + MGP_CASTEiJ_P0084534 Rgma protein_coding protein_coding MGP_CASTEiJ_T0084535.1 MGP_CASTEiJ_G0031400.1 mouse_genomes_project 7 66379921 66381894 + Rgma protein_coding retained_intron MGP_CASTEiJ_T0015269.1 MGP_CASTEiJ_G0013432.1 mouse_genomes_project 7 90290174 90290713 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010610.1 MGP_CASTEiJ_G0008798.1 mouse_genomes_project 7 122113886 122113961 - Mir7058 miRNA miRNA MGP_CASTEiJ_T0087045.1 MGP_CASTEiJ_G0032092.1 mouse_genomes_project 7 123800231 123804650 - MGP_CASTEiJ_P0087045 Prss8 protein_coding protein_coding MGP_CASTEiJ_T0087046.1 MGP_CASTEiJ_G0032092.1 mouse_genomes_project 7 123800231 123804650 - MGP_CASTEiJ_P0087046 Prss8 protein_coding protein_coding MGP_CASTEiJ_T0087047.1 MGP_CASTEiJ_G0032092.1 mouse_genomes_project 7 123801277 123804641 - MGP_CASTEiJ_P0087047 Prss8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086379.1 MGP_CASTEiJ_G0031969.1 mouse_genomes_project 7 117236696 117302551 - MGP_CASTEiJ_P0086379 Usp31 protein_coding protein_coding MGP_CASTEiJ_T0086380.1 MGP_CASTEiJ_G0031969.1 mouse_genomes_project 7 117253575 117261236 - Usp31 protein_coding retained_intron MGP_CASTEiJ_T0015117.1 MGP_CASTEiJ_G0013280.1 mouse_genomes_project 7 1518328 1519286 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102583.1 MGP_CASTEiJ_G0039307.1 mouse_genomes_project 7 97945051 97947444 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0086441.1 MGP_CASTEiJ_G0031983.1 mouse_genomes_project 7 118338818 118444691 + MGP_CASTEiJ_P0086441 Cacng3 protein_coding protein_coding MGP_CASTEiJ_T0086442.1 MGP_CASTEiJ_G0031983.1 mouse_genomes_project 7 118339719 118443719 + MGP_CASTEiJ_P0086442 Cacng3 protein_coding protein_coding MGP_CASTEiJ_T0086443.1 MGP_CASTEiJ_G0031983.1 mouse_genomes_project 7 118339746 118443838 + MGP_CASTEiJ_P0086443 Cacng3 protein_coding protein_coding MGP_CASTEiJ_T0084567.1 MGP_CASTEiJ_G0031405.1 mouse_genomes_project 7 68223118 68306005 - MGP_CASTEiJ_P0084567 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084568.1 MGP_CASTEiJ_G0031405.1 mouse_genomes_project 7 68225655 68304310 - MGP_CASTEiJ_P0084568 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084569.1 MGP_CASTEiJ_G0031405.1 mouse_genomes_project 7 68228183 68256838 - MGP_CASTEiJ_P0084569 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084570.1 MGP_CASTEiJ_G0031405.1 mouse_genomes_project 7 68266929 68271785 - protein_coding processed_transcript MGP_CASTEiJ_T0084571.1 MGP_CASTEiJ_G0031405.1 mouse_genomes_project 7 68301513 68410753 - protein_coding retained_intron MGP_CASTEiJ_T0100022.1 MGP_CASTEiJ_G0036935.1 mouse_genomes_project 7 85872215 85872360 - Gm23928 snRNA snRNA MGP_CASTEiJ_T0002171.1 MGP_CASTEiJ_G0002091.1 mouse_genomes_project 7 56780027 56780177 + TEC TEC MGP_CASTEiJ_T0085658.1 MGP_CASTEiJ_G0031724.1 mouse_genomes_project 7 98991989 98992922 - MGP_CASTEiJ_P0085658 protein_coding protein_coding MGP_CASTEiJ_T0101282.1 MGP_CASTEiJ_G0038195.1 mouse_genomes_project 7 138445047 138445184 + Snora52 snoRNA snoRNA MGP_CASTEiJ_T0015129.1 MGP_CASTEiJ_G0013292.1 mouse_genomes_project 7 7847389 7848376 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0087417.1 MGP_CASTEiJ_G0032171.1 mouse_genomes_project 7 135700715 135721334 - MGP_CASTEiJ_P0087417 Bnip3 protein_coding protein_coding MGP_CASTEiJ_T0087418.1 MGP_CASTEiJ_G0032171.1 mouse_genomes_project 7 135703550 135721323 - Bnip3 protein_coding processed_transcript MGP_CASTEiJ_T0087419.1 MGP_CASTEiJ_G0032171.1 mouse_genomes_project 7 135703994 135707673 - Bnip3 protein_coding processed_transcript MGP_CASTEiJ_T0087420.1 MGP_CASTEiJ_G0032171.1 mouse_genomes_project 7 135707935 135721347 - Bnip3 protein_coding processed_transcript MGP_CASTEiJ_T0087421.1 MGP_CASTEiJ_G0032171.1 mouse_genomes_project 7 135708105 135721307 - Bnip3 protein_coding processed_transcript MGP_CASTEiJ_T0082021.1 MGP_CASTEiJ_G0030785.1 mouse_genomes_project 7 12496003 12498889 + MGP_CASTEiJ_P0082021 Ceacam14 protein_coding protein_coding MGP_CASTEiJ_T0083233.1 MGP_CASTEiJ_G0031092.1 mouse_genomes_project 7 23671017 23673538 + Fam187b protein_coding retained_intron MGP_CASTEiJ_T0083234.1 MGP_CASTEiJ_G0031092.1 mouse_genomes_project 7 23671031 23687414 + MGP_CASTEiJ_P0083234 Fam187b protein_coding protein_coding MGP_CASTEiJ_T0083235.1 MGP_CASTEiJ_G0031092.1 mouse_genomes_project 7 23674250 23687420 + MGP_CASTEiJ_P0083235 Fam187b protein_coding protein_coding MGP_CASTEiJ_T0083236.1 MGP_CASTEiJ_G0031092.1 mouse_genomes_project 7 23679606 23687156 + MGP_CASTEiJ_P0083236 Fam187b protein_coding protein_coding MGP_CASTEiJ_T0084946.1 MGP_CASTEiJ_G0031480.1 mouse_genomes_project 7 77110725 77149148 + Tmc3 protein_coding retained_intron MGP_CASTEiJ_T0084947.1 MGP_CASTEiJ_G0031480.1 mouse_genomes_project 7 77110729 77121073 + Tmc3 protein_coding retained_intron MGP_CASTEiJ_T0084948.1 MGP_CASTEiJ_G0031480.1 mouse_genomes_project 7 77110729 77156739 + MGP_CASTEiJ_P0084948 Tmc3 protein_coding protein_coding MGP_CASTEiJ_T0084949.1 MGP_CASTEiJ_G0031480.1 mouse_genomes_project 7 77110890 77154078 + MGP_CASTEiJ_P0084949 Tmc3 protein_coding protein_coding MGP_CASTEiJ_T0084950.1 MGP_CASTEiJ_G0031480.1 mouse_genomes_project 7 77126759 77128142 + Tmc3 protein_coding retained_intron MGP_CASTEiJ_T0082702.1 MGP_CASTEiJ_G0030967.1 mouse_genomes_project 7 20362372 20385500 - MGP_CASTEiJ_P0082702 Zfp974 protein_coding protein_coding MGP_CASTEiJ_T0085713.1 MGP_CASTEiJ_G0031759.1 mouse_genomes_project 7 100013358 100014297 - MGP_CASTEiJ_P0085713 Olfr672 protein_coding protein_coding MGP_CASTEiJ_T0083627.1 MGP_CASTEiJ_G0031177.1 mouse_genomes_project 7 35990743 35995133 + MGP_CASTEiJ_P0083627 Klk10 protein_coding protein_coding MGP_CASTEiJ_T0005073.1 MGP_CASTEiJ_G0004326.1 mouse_genomes_project 7 36928484 36931049 + Gm44646 antisense antisense MGP_CASTEiJ_T0087048.1 MGP_CASTEiJ_G0032093.1 mouse_genomes_project 7 123807172 123810006 - Prss36 protein_coding processed_transcript MGP_CASTEiJ_T0087049.1 MGP_CASTEiJ_G0032093.1 mouse_genomes_project 7 123807172 123810046 - Prss36 protein_coding processed_transcript MGP_CASTEiJ_T0087050.1 MGP_CASTEiJ_G0032093.1 mouse_genomes_project 7 123807172 123822115 - MGP_CASTEiJ_P0087050 Prss36 protein_coding protein_coding MGP_CASTEiJ_T0087051.1 MGP_CASTEiJ_G0032093.1 mouse_genomes_project 7 123807172 123822115 - MGP_CASTEiJ_P0087051 Prss36 protein_coding protein_coding MGP_CASTEiJ_T0087052.1 MGP_CASTEiJ_G0032093.1 mouse_genomes_project 7 123807333 123809977 - MGP_CASTEiJ_P0087052 Prss36 protein_coding protein_coding MGP_CASTEiJ_T0087053.1 MGP_CASTEiJ_G0032093.1 mouse_genomes_project 7 123807436 123809956 - MGP_CASTEiJ_P0087053 Prss36 protein_coding protein_coding MGP_CASTEiJ_T0087054.1 MGP_CASTEiJ_G0032093.1 mouse_genomes_project 7 123807494 123810624 - Prss36 protein_coding retained_intron MGP_CASTEiJ_T0087055.1 MGP_CASTEiJ_G0032093.1 mouse_genomes_project 7 123807541 123810041 - Prss36 protein_coding processed_transcript MGP_CASTEiJ_T0083025.1 MGP_CASTEiJ_G0031049.1 mouse_genomes_project 7 22945824 22951446 + MGP_CASTEiJ_P0083025 Alkbh6 protein_coding protein_coding MGP_CASTEiJ_T0083026.1 MGP_CASTEiJ_G0031049.1 mouse_genomes_project 7 22945884 22951296 + MGP_CASTEiJ_P0083026 Alkbh6 protein_coding protein_coding MGP_CASTEiJ_T0083027.1 MGP_CASTEiJ_G0031049.1 mouse_genomes_project 7 22945884 22951303 + MGP_CASTEiJ_P0083027 Alkbh6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083028.1 MGP_CASTEiJ_G0031049.1 mouse_genomes_project 7 22945895 22951445 + Alkbh6 protein_coding retained_intron MGP_CASTEiJ_T0083029.1 MGP_CASTEiJ_G0031049.1 mouse_genomes_project 7 22945902 22949635 + Alkbh6 protein_coding retained_intron MGP_CASTEiJ_T0083030.1 MGP_CASTEiJ_G0031049.1 mouse_genomes_project 7 22945916 22949547 + Alkbh6 protein_coding retained_intron MGP_CASTEiJ_T0083031.1 MGP_CASTEiJ_G0031049.1 mouse_genomes_project 7 22945920 22948167 + Alkbh6 protein_coding processed_transcript MGP_CASTEiJ_T0083032.1 MGP_CASTEiJ_G0031049.1 mouse_genomes_project 7 22945961 22949823 + Alkbh6 protein_coding retained_intron MGP_CASTEiJ_T0083033.1 MGP_CASTEiJ_G0031049.1 mouse_genomes_project 7 22946885 22949788 + Alkbh6 protein_coding retained_intron MGP_CASTEiJ_T0083034.1 MGP_CASTEiJ_G0031049.1 mouse_genomes_project 7 22948259 22949490 + Alkbh6 protein_coding retained_intron MGP_CASTEiJ_T0083035.1 MGP_CASTEiJ_G0031049.1 mouse_genomes_project 7 22949801 22951446 + Alkbh6 protein_coding processed_transcript MGP_CASTEiJ_T0015142.1 MGP_CASTEiJ_G0013305.1 mouse_genomes_project 7 11446778 11447330 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0086152.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111421759 111542197 - MGP_CASTEiJ_P0086152 Plekha7 protein_coding protein_coding MGP_CASTEiJ_T0086153.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111421767 111621096 - MGP_CASTEiJ_P0086153 Plekha7 protein_coding protein_coding MGP_CASTEiJ_T0086154.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111421802 111433342 - MGP_CASTEiJ_P0086154 Plekha7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0086155.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111424302 111490612 - MGP_CASTEiJ_P0086155 Plekha7 protein_coding protein_coding MGP_CASTEiJ_T0086156.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111434449 111499900 - MGP_CASTEiJ_P0086156 Plekha7 protein_coding protein_coding MGP_CASTEiJ_T0086157.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111434453 111490890 - MGP_CASTEiJ_P0086157 Plekha7 protein_coding protein_coding MGP_CASTEiJ_T0086158.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111435592 111621074 - MGP_CASTEiJ_P0086158 Plekha7 protein_coding protein_coding MGP_CASTEiJ_T0086159.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111435689 111541916 - MGP_CASTEiJ_P0086159 Plekha7 protein_coding protein_coding MGP_CASTEiJ_T0086160.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111443394 111458568 - MGP_CASTEiJ_P0086160 Plekha7 protein_coding protein_coding MGP_CASTEiJ_T0086161.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111456745 111542051 - Plekha7 protein_coding retained_intron MGP_CASTEiJ_T0086162.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111463843 111464787 - Plekha7 protein_coding retained_intron MGP_CASTEiJ_T0086163.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111465163 111485789 - Plekha7 protein_coding processed_transcript MGP_CASTEiJ_T0086164.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111472274 111562769 - MGP_CASTEiJ_P0086164 Plekha7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086165.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111472397 111488292 - Plekha7 protein_coding processed_transcript MGP_CASTEiJ_T0086166.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111477041 111620960 - MGP_CASTEiJ_P0086166 Plekha7 protein_coding protein_coding MGP_CASTEiJ_T0086167.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111478213 111620769 - Plekha7 protein_coding retained_intron MGP_CASTEiJ_T0086168.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111478259 111481987 - Plekha7 protein_coding retained_intron MGP_CASTEiJ_T0086169.1 MGP_CASTEiJ_G0031915.1 mouse_genomes_project 7 111482554 111568717 - Plekha7 protein_coding processed_transcript MGP_CASTEiJ_T0084049.1 MGP_CASTEiJ_G0031287.1 mouse_genomes_project 7 38487024 38498406 - Syngr4 protein_coding processed_transcript MGP_CASTEiJ_T0084050.1 MGP_CASTEiJ_G0031287.1 mouse_genomes_project 7 38488690 38497506 - MGP_CASTEiJ_P0084050 Syngr4 protein_coding protein_coding MGP_CASTEiJ_T0082160.1 MGP_CASTEiJ_G0030823.1 mouse_genomes_project 7 14207946 14221121 - MGP_CASTEiJ_P0082160 protein_coding protein_coding MGP_CASTEiJ_T0084203.1 MGP_CASTEiJ_G0031331.1 mouse_genomes_project 7 42645946 42660918 + MGP_CASTEiJ_P0084203 Htatip2 protein_coding protein_coding MGP_CASTEiJ_T0086651.1 MGP_CASTEiJ_G0032019.1 mouse_genomes_project 7 122458769 122465376 - MGP_CASTEiJ_P0086651 Slx1b protein_coding protein_coding MGP_CASTEiJ_T0086652.1 MGP_CASTEiJ_G0032019.1 mouse_genomes_project 7 122459768 122465231 - Slx1b protein_coding retained_intron MGP_CASTEiJ_T0086653.1 MGP_CASTEiJ_G0032019.1 mouse_genomes_project 7 122460211 122465337 - Slx1b protein_coding retained_intron MGP_CASTEiJ_T0086654.1 MGP_CASTEiJ_G0032019.1 mouse_genomes_project 7 122460211 122465316 - MGP_CASTEiJ_P0086654 Slx1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082969.1 MGP_CASTEiJ_G0031033.1 mouse_genomes_project 7 22639814 22646144 - MGP_CASTEiJ_P0082969 Zfp14 protein_coding protein_coding MGP_CASTEiJ_T0085442.1 MGP_CASTEiJ_G0031613.1 mouse_genomes_project 7 96368232 96428930 + Clpb protein_coding retained_intron MGP_CASTEiJ_T0085443.1 MGP_CASTEiJ_G0031613.1 mouse_genomes_project 7 96368232 96497144 + MGP_CASTEiJ_P0085443 Clpb protein_coding protein_coding MGP_CASTEiJ_T0085444.1 MGP_CASTEiJ_G0031613.1 mouse_genomes_project 7 96368304 96494783 + MGP_CASTEiJ_P0085444 Clpb protein_coding protein_coding MGP_CASTEiJ_T0085445.1 MGP_CASTEiJ_G0031613.1 mouse_genomes_project 7 96368356 96393638 + Clpb protein_coding retained_intron MGP_CASTEiJ_T0085446.1 MGP_CASTEiJ_G0031613.1 mouse_genomes_project 7 96368374 96411191 + MGP_CASTEiJ_P0085446 Clpb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085447.1 MGP_CASTEiJ_G0031613.1 mouse_genomes_project 7 96368375 96493855 + Clpb protein_coding retained_intron MGP_CASTEiJ_T0085448.1 MGP_CASTEiJ_G0031613.1 mouse_genomes_project 7 96386804 96471120 + MGP_CASTEiJ_P0085448 Clpb protein_coding protein_coding MGP_CASTEiJ_T0085449.1 MGP_CASTEiJ_G0031613.1 mouse_genomes_project 7 96387891 96458997 + MGP_CASTEiJ_P0085449 Clpb protein_coding protein_coding MGP_CASTEiJ_T0085450.1 MGP_CASTEiJ_G0031613.1 mouse_genomes_project 7 96471003 96476787 + Clpb protein_coding processed_transcript MGP_CASTEiJ_T0085451.1 MGP_CASTEiJ_G0031613.1 mouse_genomes_project 7 96471030 96492593 + Clpb protein_coding processed_transcript MGP_CASTEiJ_T0084001.1 MGP_CASTEiJ_G0031272.1 mouse_genomes_project 7 38223911 38244861 - MGP_CASTEiJ_P0084001 Fut2 protein_coding protein_coding MGP_CASTEiJ_T0086190.1 MGP_CASTEiJ_G0031919.1 mouse_genomes_project 7 112738924 113003654 + Xylt1 protein_coding retained_intron MGP_CASTEiJ_T0086191.1 MGP_CASTEiJ_G0031919.1 mouse_genomes_project 7 112738924 113036730 + MGP_CASTEiJ_P0086191 Xylt1 protein_coding protein_coding MGP_CASTEiJ_T0086192.1 MGP_CASTEiJ_G0031919.1 mouse_genomes_project 7 112837877 112916662 + Xylt1 protein_coding retained_intron MGP_CASTEiJ_T0002131.1 MGP_CASTEiJ_G0002051.1 mouse_genomes_project 7 16892190 16892428 + TEC TEC MGP_CASTEiJ_T0085490.1 MGP_CASTEiJ_G0031620.1 mouse_genomes_project 7 96626524 96650053 + MGP_CASTEiJ_P0085490 Lamtor1 protein_coding protein_coding MGP_CASTEiJ_T0085491.1 MGP_CASTEiJ_G0031620.1 mouse_genomes_project 7 96626545 96631909 + MGP_CASTEiJ_P0085491 Lamtor1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085656.1 MGP_CASTEiJ_G0031722.1 mouse_genomes_project 7 98939011 98939953 - MGP_CASTEiJ_P0085656 Olfr642 protein_coding protein_coding MGP_CASTEiJ_T0081663.1 MGP_CASTEiJ_G0030661.1 mouse_genomes_project 7 3109311 3127172 + MGP_CASTEiJ_P0081663 Zfp444 protein_coding protein_coding MGP_CASTEiJ_T0081664.1 MGP_CASTEiJ_G0030661.1 mouse_genomes_project 7 3109567 3135190 + MGP_CASTEiJ_P0081664 Zfp444 protein_coding protein_coding MGP_CASTEiJ_T0081665.1 MGP_CASTEiJ_G0030661.1 mouse_genomes_project 7 3109587 3136084 + MGP_CASTEiJ_P0081665 Zfp444 protein_coding protein_coding MGP_CASTEiJ_T0081666.1 MGP_CASTEiJ_G0030661.1 mouse_genomes_project 7 3109598 3135189 + MGP_CASTEiJ_P0081666 Zfp444 protein_coding protein_coding MGP_CASTEiJ_T0081667.1 MGP_CASTEiJ_G0030661.1 mouse_genomes_project 7 3110889 3127044 + MGP_CASTEiJ_P0081667 Zfp444 protein_coding protein_coding MGP_CASTEiJ_T0081668.1 MGP_CASTEiJ_G0030661.1 mouse_genomes_project 7 3111062 3127652 + Zfp444 protein_coding processed_transcript MGP_CASTEiJ_T0081669.1 MGP_CASTEiJ_G0030661.1 mouse_genomes_project 7 3111117 3134610 + MGP_CASTEiJ_P0081669 Zfp444 protein_coding protein_coding MGP_CASTEiJ_T0081670.1 MGP_CASTEiJ_G0030661.1 mouse_genomes_project 7 3124634 3132923 + MGP_CASTEiJ_P0081670 Zfp444 protein_coding protein_coding MGP_CASTEiJ_T0081671.1 MGP_CASTEiJ_G0030661.1 mouse_genomes_project 7 3126796 3132998 + MGP_CASTEiJ_P0081671 Zfp444 protein_coding protein_coding MGP_CASTEiJ_T0084166.1 MGP_CASTEiJ_G0031320.1 mouse_genomes_project 7 41066077 41067295 - MGP_CASTEiJ_P0084166 Mrgprb4 protein_coding protein_coding MGP_CASTEiJ_T0086341.1 MGP_CASTEiJ_G0031959.1 mouse_genomes_project 7 116267717 116343418 + MGP_CASTEiJ_P0086341 Vwa3a protein_coding protein_coding MGP_CASTEiJ_T0086342.1 MGP_CASTEiJ_G0031959.1 mouse_genomes_project 7 116267717 116327696 + MGP_CASTEiJ_P0086342 Vwa3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086343.1 MGP_CASTEiJ_G0031959.1 mouse_genomes_project 7 116268207 116343415 + MGP_CASTEiJ_P0086343 Vwa3a protein_coding protein_coding MGP_CASTEiJ_T0086344.1 MGP_CASTEiJ_G0031959.1 mouse_genomes_project 7 116268207 116343625 + MGP_CASTEiJ_P0086344 Vwa3a protein_coding protein_coding MGP_CASTEiJ_T0086345.1 MGP_CASTEiJ_G0031959.1 mouse_genomes_project 7 116268271 116343633 + MGP_CASTEiJ_P0086345 Vwa3a protein_coding unknown_likely_coding MGP_CASTEiJ_T0086346.1 MGP_CASTEiJ_G0031959.1 mouse_genomes_project 7 116320083 116327697 + MGP_CASTEiJ_P0086346 Vwa3a protein_coding protein_coding MGP_CASTEiJ_T0086347.1 MGP_CASTEiJ_G0031959.1 mouse_genomes_project 7 116321742 116327697 + Vwa3a protein_coding processed_transcript MGP_CASTEiJ_T0086348.1 MGP_CASTEiJ_G0031959.1 mouse_genomes_project 7 116324174 116330213 + MGP_CASTEiJ_P0086348 Vwa3a protein_coding protein_coding MGP_CASTEiJ_T0005067.1 MGP_CASTEiJ_G0004323.1 mouse_genomes_project 7 32452741 32541779 - antisense antisense MGP_CASTEiJ_T0005068.1 MGP_CASTEiJ_G0004323.1 mouse_genomes_project 7 32485063 32537936 - antisense antisense MGP_CASTEiJ_T0005069.1 MGP_CASTEiJ_G0004323.1 mouse_genomes_project 7 32487163 32514997 - antisense antisense MGP_CASTEiJ_T0005070.1 MGP_CASTEiJ_G0004323.1 mouse_genomes_project 7 32515179 32538214 - antisense antisense MGP_CASTEiJ_T0085614.1 MGP_CASTEiJ_G0031680.1 mouse_genomes_project 7 98118587 98119532 - MGP_CASTEiJ_P0085614 Olfr600 protein_coding protein_coding MGP_CASTEiJ_T0008759.1 MGP_CASTEiJ_G0007073.1 mouse_genomes_project 7 110095693 110098921 - Gm45017 lincRNA lincRNA MGP_CASTEiJ_T0102539.1 MGP_CASTEiJ_G0039263.1 mouse_genomes_project 7 40792211 40792667 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0086077.1 MGP_CASTEiJ_G0031899.1 mouse_genomes_project 7 108384945 108502432 + MGP_CASTEiJ_P0086077 Arntl protein_coding protein_coding MGP_CASTEiJ_T0085895.1 MGP_CASTEiJ_G0031847.1 mouse_genomes_project 7 103449350 103450409 - MGP_CASTEiJ_P0085895 Olfr502 protein_coding protein_coding MGP_CASTEiJ_T0099999.1 MGP_CASTEiJ_G0036912.1 mouse_genomes_project 7 14014162 14014322 + Gm25134 snRNA snRNA MGP_CASTEiJ_T0005023.1 MGP_CASTEiJ_G0004289.1 mouse_genomes_project 7 14792779 14799775 + Gm16251 antisense antisense MGP_CASTEiJ_T0082401.1 MGP_CASTEiJ_G0030895.1 mouse_genomes_project 7 17236279 17239263 - MGP_CASTEiJ_P0082401 Rabac1 protein_coding protein_coding MGP_CASTEiJ_T0082402.1 MGP_CASTEiJ_G0030895.1 mouse_genomes_project 7 17236280 17238493 - Rabac1 protein_coding retained_intron MGP_CASTEiJ_T0082403.1 MGP_CASTEiJ_G0030895.1 mouse_genomes_project 7 17236288 17238535 - Rabac1 protein_coding processed_transcript MGP_CASTEiJ_T0082404.1 MGP_CASTEiJ_G0030895.1 mouse_genomes_project 7 17236288 17239147 - MGP_CASTEiJ_P0082404 Rabac1 protein_coding protein_coding MGP_CASTEiJ_T0082405.1 MGP_CASTEiJ_G0030895.1 mouse_genomes_project 7 17236289 17238736 - Rabac1 protein_coding processed_transcript MGP_CASTEiJ_T0082406.1 MGP_CASTEiJ_G0030895.1 mouse_genomes_project 7 17238018 17239061 - Rabac1 protein_coding retained_intron MGP_CASTEiJ_T0010588.1 MGP_CASTEiJ_G0008776.1 mouse_genomes_project 7 56772945 56773051 + Mir211 miRNA miRNA MGP_CASTEiJ_T0101229.1 MGP_CASTEiJ_G0038142.1 mouse_genomes_project 7 36638944 36639034 + Snord88c snoRNA snoRNA MGP_CASTEiJ_T0005174.1 MGP_CASTEiJ_G0004397.1 mouse_genomes_project 7 140081885 140083663 - Tspan32os antisense antisense MGP_CASTEiJ_T0005175.1 MGP_CASTEiJ_G0004397.1 mouse_genomes_project 7 140081885 140102455 - Tspan32os antisense antisense MGP_CASTEiJ_T0085710.1 MGP_CASTEiJ_G0031756.1 mouse_genomes_project 7 99945712 99946669 - MGP_CASTEiJ_P0085710 Olfr668 protein_coding protein_coding MGP_CASTEiJ_T0087825.1 MGP_CASTEiJ_G0032274.1 mouse_genomes_project 7 139235567 139236754 + MGP_CASTEiJ_P0087825 protein_coding protein_coding MGP_CASTEiJ_T0100004.1 MGP_CASTEiJ_G0036917.1 mouse_genomes_project 7 31219697 31219808 + Gm26327 snRNA snRNA MGP_CASTEiJ_T0084257.1 MGP_CASTEiJ_G0031346.1 mouse_genomes_project 7 48652648 48705453 + Cyfip1 protein_coding retained_intron MGP_CASTEiJ_T0084258.1 MGP_CASTEiJ_G0031346.1 mouse_genomes_project 7 48652973 48746645 + MGP_CASTEiJ_P0084258 Cyfip1 protein_coding protein_coding MGP_CASTEiJ_T0084259.1 MGP_CASTEiJ_G0031346.1 mouse_genomes_project 7 48652974 48691032 + MGP_CASTEiJ_P0084259 Cyfip1 protein_coding protein_coding MGP_CASTEiJ_T0084260.1 MGP_CASTEiJ_G0031346.1 mouse_genomes_project 7 48653098 48744544 + MGP_CASTEiJ_P0084260 Cyfip1 protein_coding protein_coding MGP_CASTEiJ_T0084261.1 MGP_CASTEiJ_G0031346.1 mouse_genomes_project 7 48653142 48739822 + Cyfip1 protein_coding retained_intron MGP_CASTEiJ_T0084262.1 MGP_CASTEiJ_G0031346.1 mouse_genomes_project 7 48653147 48744518 + MGP_CASTEiJ_P0084262 Cyfip1 protein_coding protein_coding MGP_CASTEiJ_T0084263.1 MGP_CASTEiJ_G0031346.1 mouse_genomes_project 7 48684854 48737996 + MGP_CASTEiJ_P0084263 Cyfip1 protein_coding protein_coding MGP_CASTEiJ_T0084264.1 MGP_CASTEiJ_G0031346.1 mouse_genomes_project 7 48710113 48714080 + Cyfip1 protein_coding retained_intron MGP_CASTEiJ_T0084265.1 MGP_CASTEiJ_G0031346.1 mouse_genomes_project 7 48710443 48744544 + Cyfip1 protein_coding retained_intron MGP_CASTEiJ_T0084266.1 MGP_CASTEiJ_G0031346.1 mouse_genomes_project 7 48711188 48718268 + Cyfip1 protein_coding retained_intron MGP_CASTEiJ_T0084267.1 MGP_CASTEiJ_G0031346.1 mouse_genomes_project 7 48722481 48727788 + Cyfip1 protein_coding retained_intron MGP_CASTEiJ_T0084268.1 MGP_CASTEiJ_G0031346.1 mouse_genomes_project 7 48742929 48744518 + Cyfip1 protein_coding retained_intron MGP_CASTEiJ_T0005007.1 MGP_CASTEiJ_G0004279.1 mouse_genomes_project 7 1534676 1538268 + Gm44877 antisense antisense MGP_CASTEiJ_T0083251.1 MGP_CASTEiJ_G0031094.1 mouse_genomes_project 7 23738042 23746947 - MGP_CASTEiJ_P0083251 Fxyd7 protein_coding protein_coding MGP_CASTEiJ_T0083252.1 MGP_CASTEiJ_G0031094.1 mouse_genomes_project 7 23738042 23747011 - MGP_CASTEiJ_P0083252 Fxyd7 protein_coding protein_coding MGP_CASTEiJ_T0102473.1 MGP_CASTEiJ_G0039198.1 mouse_genomes_project 7 9498673 9499110 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0081828.1 MGP_CASTEiJ_G0030729.1 mouse_genomes_project 7 8394852 8433723 + Lig1 protein_coding processed_transcript MGP_CASTEiJ_T0081829.1 MGP_CASTEiJ_G0030729.1 mouse_genomes_project 7 8394882 8433723 + MGP_CASTEiJ_P0081829 Lig1 protein_coding protein_coding MGP_CASTEiJ_T0081830.1 MGP_CASTEiJ_G0030729.1 mouse_genomes_project 7 8396394 8433723 + MGP_CASTEiJ_P0081830 Lig1 protein_coding protein_coding MGP_CASTEiJ_T0081831.1 MGP_CASTEiJ_G0030729.1 mouse_genomes_project 7 8396403 8410944 + MGP_CASTEiJ_P0081831 Lig1 protein_coding protein_coding MGP_CASTEiJ_T0081832.1 MGP_CASTEiJ_G0030729.1 mouse_genomes_project 7 8396423 8412028 + MGP_CASTEiJ_P0081832 Lig1 protein_coding protein_coding MGP_CASTEiJ_T0081833.1 MGP_CASTEiJ_G0030729.1 mouse_genomes_project 7 8396433 8433724 + Lig1 protein_coding processed_transcript MGP_CASTEiJ_T0081834.1 MGP_CASTEiJ_G0030729.1 mouse_genomes_project 7 8396584 8433728 + MGP_CASTEiJ_P0081834 Lig1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0081835.1 MGP_CASTEiJ_G0030729.1 mouse_genomes_project 7 8396825 8433731 + Lig1 protein_coding processed_transcript MGP_CASTEiJ_T0081836.1 MGP_CASTEiJ_G0030729.1 mouse_genomes_project 7 8396825 8433723 + MGP_CASTEiJ_P0081836 Lig1 protein_coding protein_coding MGP_CASTEiJ_T0081837.1 MGP_CASTEiJ_G0030729.1 mouse_genomes_project 7 8397697 8433731 + Lig1 protein_coding processed_transcript MGP_CASTEiJ_T0081838.1 MGP_CASTEiJ_G0030729.1 mouse_genomes_project 7 8397697 8410671 + MGP_CASTEiJ_P0081838 Lig1 protein_coding protein_coding MGP_CASTEiJ_T0081839.1 MGP_CASTEiJ_G0030729.1 mouse_genomes_project 7 8422309 8425519 + Lig1 protein_coding retained_intron MGP_CASTEiJ_T0081840.1 MGP_CASTEiJ_G0030729.1 mouse_genomes_project 7 8426692 8433663 + Lig1 protein_coding retained_intron MGP_CASTEiJ_T0015259.1 MGP_CASTEiJ_G0013422.1 mouse_genomes_project 7 79143035 79143681 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0086928.1 MGP_CASTEiJ_G0032069.1 mouse_genomes_project 7 123371782 123421668 + MGP_CASTEiJ_P0086928 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086930.1 MGP_CASTEiJ_G0032069.1 mouse_genomes_project 7 123414899 123417821 + MGP_CASTEiJ_P0086930 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0017684.1 MGP_CASTEiJ_G0015016.1 mouse_genomes_project 7 138458634 138463924 - Gm10575 processed_transcript processed_transcript MGP_CASTEiJ_T0017685.1 MGP_CASTEiJ_G0015016.1 mouse_genomes_project 7 138458636 138466169 - Gm10575 processed_transcript processed_transcript MGP_CASTEiJ_T0017686.1 MGP_CASTEiJ_G0015016.1 mouse_genomes_project 7 138459073 138461027 - Gm10575 processed_transcript processed_transcript MGP_CASTEiJ_T0008733.1 MGP_CASTEiJ_G0007055.1 mouse_genomes_project 7 86886334 86893826 + Gm26944 lincRNA lincRNA MGP_CASTEiJ_T0015140.1 MGP_CASTEiJ_G0013303.1 mouse_genomes_project 7 11258385 11259134 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085008.1 MGP_CASTEiJ_G0031512.1 mouse_genomes_project 7 80766442 80829550 - MGP_CASTEiJ_P0085008 Folh1 protein_coding protein_coding MGP_CASTEiJ_T0085009.1 MGP_CASTEiJ_G0031512.1 mouse_genomes_project 7 80766442 80829494 - MGP_CASTEiJ_P0085009 Folh1 protein_coding protein_coding MGP_CASTEiJ_T0086461.1 MGP_CASTEiJ_G0031986.1 mouse_genomes_project 7 118920997 118974020 + MGP_CASTEiJ_P0086461 protein_coding protein_coding MGP_CASTEiJ_T0086462.1 MGP_CASTEiJ_G0031986.1 mouse_genomes_project 7 118921028 118935154 + protein_coding processed_transcript MGP_CASTEiJ_T0086463.1 MGP_CASTEiJ_G0031986.1 mouse_genomes_project 7 118935053 118945792 + MGP_CASTEiJ_P0086463 protein_coding protein_coding MGP_CASTEiJ_T0086464.1 MGP_CASTEiJ_G0031986.1 mouse_genomes_project 7 118935053 118954393 + MGP_CASTEiJ_P0086464 protein_coding protein_coding MGP_CASTEiJ_T0086465.1 MGP_CASTEiJ_G0031986.1 mouse_genomes_project 7 118941884 118982052 + MGP_CASTEiJ_P0086465 protein_coding unknown_likely_coding MGP_CASTEiJ_T0086466.1 MGP_CASTEiJ_G0031986.1 mouse_genomes_project 7 118946693 118957097 + MGP_CASTEiJ_P0086466 protein_coding protein_coding MGP_CASTEiJ_T0086467.1 MGP_CASTEiJ_G0031986.1 mouse_genomes_project 7 118973530 118976130 + protein_coding processed_transcript MGP_CASTEiJ_T0015243.1 MGP_CASTEiJ_G0013406.1 mouse_genomes_project 7 68524751 68525030 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015185.1 MGP_CASTEiJ_G0013348.1 mouse_genomes_project 7 26834476 26836704 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100048.1 MGP_CASTEiJ_G0036961.1 mouse_genomes_project 7 134852818 134852927 - Gm25798 snRNA snRNA MGP_CASTEiJ_T0083571.1 MGP_CASTEiJ_G0031160.1 mouse_genomes_project 7 35611984 35614556 + MGP_CASTEiJ_P0083571 Cldnd2 protein_coding protein_coding MGP_CASTEiJ_T0083572.1 MGP_CASTEiJ_G0031160.1 mouse_genomes_project 7 35612776 35614521 + MGP_CASTEiJ_P0083572 Cldnd2 protein_coding protein_coding MGP_CASTEiJ_T0017590.1 MGP_CASTEiJ_G0014977.1 mouse_genomes_project 7 22151192 22155288 - A330087D11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0081611.1 MGP_CASTEiJ_G0030632.1 mouse_genomes_project 7 1754213 1766827 - MGP_CASTEiJ_P0081611 Shisa7 protein_coding protein_coding MGP_CASTEiJ_T0081612.1 MGP_CASTEiJ_G0030632.1 mouse_genomes_project 7 1754214 1775368 - MGP_CASTEiJ_P0081612 Shisa7 protein_coding protein_coding MGP_CASTEiJ_T0081613.1 MGP_CASTEiJ_G0030632.1 mouse_genomes_project 7 1756672 1775368 - MGP_CASTEiJ_P0081613 Shisa7 protein_coding protein_coding MGP_CASTEiJ_T0081614.1 MGP_CASTEiJ_G0030632.1 mouse_genomes_project 7 1758842 1759770 - Shisa7 protein_coding retained_intron MGP_CASTEiJ_T0081615.1 MGP_CASTEiJ_G0030632.1 mouse_genomes_project 7 1760033 1764955 - Shisa7 protein_coding retained_intron MGP_CASTEiJ_T0011356.1 MGP_CASTEiJ_G0009544.1 mouse_genomes_project 7 68378790 68379113 + Gm24858 misc_RNA misc_RNA MGP_CASTEiJ_T0084151.1 MGP_CASTEiJ_G0031310.1 mouse_genomes_project 7 39677781 39682011 + protein_coding processed_transcript MGP_CASTEiJ_T0084152.1 MGP_CASTEiJ_G0031310.1 mouse_genomes_project 7 39677862 39682019 + protein_coding processed_transcript MGP_CASTEiJ_T0084153.1 MGP_CASTEiJ_G0031310.1 mouse_genomes_project 7 39681034 39682012 + MGP_CASTEiJ_P0084153 protein_coding protein_coding MGP_CASTEiJ_T0085209.1 MGP_CASTEiJ_G0031561.1 mouse_genomes_project 7 92557502 92624943 - MGP_CASTEiJ_P0085209 Capn5 protein_coding protein_coding MGP_CASTEiJ_T0085210.1 MGP_CASTEiJ_G0031561.1 mouse_genomes_project 7 92559600 92606546 - MGP_CASTEiJ_P0085210 Capn5 protein_coding protein_coding MGP_CASTEiJ_T0085212.1 MGP_CASTEiJ_G0031561.1 mouse_genomes_project 7 92587719 92606414 - Capn5 protein_coding processed_transcript MGP_CASTEiJ_T0085213.1 MGP_CASTEiJ_G0031561.1 mouse_genomes_project 7 92606184 92611677 - MGP_CASTEiJ_P0085213 Capn5 protein_coding protein_coding MGP_CASTEiJ_T0085214.1 MGP_CASTEiJ_G0031561.1 mouse_genomes_project 7 92606201 92612157 - MGP_CASTEiJ_P0085214 Capn5 protein_coding protein_coding MGP_CASTEiJ_T0098398.1 MGP_CASTEiJ_G0035329.1 mouse_genomes_project 7 96548655 96549281 + pseudogene pseudogene MGP_CASTEiJ_T0082464.1 MGP_CASTEiJ_G0030906.1 mouse_genomes_project 7 17593525 17596251 + MGP_CASTEiJ_P0082464 Prr19 protein_coding protein_coding MGP_CASTEiJ_T0081792.1 MGP_CASTEiJ_G0030719.1 mouse_genomes_project 7 8136760 8141607 - MGP_CASTEiJ_P0081792 Zbtb45 protein_coding protein_coding MGP_CASTEiJ_T0081793.1 MGP_CASTEiJ_G0030719.1 mouse_genomes_project 7 8137475 8141585 - MGP_CASTEiJ_P0081793 Zbtb45 protein_coding protein_coding MGP_CASTEiJ_T0101247.1 MGP_CASTEiJ_G0038160.1 mouse_genomes_project 7 52294795 52294862 - Snord64 snoRNA snoRNA MGP_CASTEiJ_T0081717.1 MGP_CASTEiJ_G0030681.1 mouse_genomes_project 7 4103293 4113876 - MGP_CASTEiJ_P0081717 Zfp954 protein_coding protein_coding MGP_CASTEiJ_T0008616.1 MGP_CASTEiJ_G0006976.1 mouse_genomes_project 7 28611989 28613145 + Gm28075 lincRNA lincRNA MGP_CASTEiJ_T0015319.1 MGP_CASTEiJ_G0013482.1 mouse_genomes_project 7 124009969 124010316 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0087822.1 MGP_CASTEiJ_G0032272.1 mouse_genomes_project 7 139026483 139082959 - MGP_CASTEiJ_P0087822 Mob2 protein_coding protein_coding MGP_CASTEiJ_T0085980.1 MGP_CASTEiJ_G0031881.1 mouse_genomes_project 7 105147141 105168471 + MGP_CASTEiJ_P0085980 Wee1 protein_coding protein_coding MGP_CASTEiJ_T0085893.1 MGP_CASTEiJ_G0031845.1 mouse_genomes_project 7 103294838 103295783 + MGP_CASTEiJ_P0085893 Olfr497 protein_coding protein_coding MGP_CASTEiJ_T0008741.1 MGP_CASTEiJ_G0007061.1 mouse_genomes_project 7 92837174 92865371 - Gm44507 lincRNA lincRNA MGP_CASTEiJ_T0005116.1 MGP_CASTEiJ_G0004356.1 mouse_genomes_project 7 91192368 91202573 - Gm15413 antisense antisense MGP_CASTEiJ_T0085786.1 MGP_CASTEiJ_G0031785.1 mouse_genomes_project 7 100758937 100778528 + Dnhd1 protein_coding processed_transcript MGP_CASTEiJ_T0085792.1 MGP_CASTEiJ_G0031785.1 mouse_genomes_project 7 100758954 100805739 + Dnhd1 protein_coding processed_transcript MGP_CASTEiJ_T0085796.1 MGP_CASTEiJ_G0031785.1 mouse_genomes_project 7 100770303 100840361 + MGP_CASTEiJ_P0085796 Dnhd1 protein_coding protein_coding MGP_CASTEiJ_T0085797.1 MGP_CASTEiJ_G0031785.1 mouse_genomes_project 7 100770684 100840329 + MGP_CASTEiJ_P0085797 Dnhd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085798.1 MGP_CASTEiJ_G0031785.1 mouse_genomes_project 7 100795500 100799745 + Dnhd1 protein_coding retained_intron MGP_CASTEiJ_T0085799.1 MGP_CASTEiJ_G0031785.1 mouse_genomes_project 7 100799568 100805732 + MGP_CASTEiJ_P0085799 Dnhd1 protein_coding protein_coding MGP_CASTEiJ_T0099005.1 MGP_CASTEiJ_G0035925.1 mouse_genomes_project 7 26331797 26332935 - Gm44836 sense_intronic sense_intronic MGP_CASTEiJ_T0083429.1 MGP_CASTEiJ_G0031128.1 mouse_genomes_project 7 26780760 26799180 + MGP_CASTEiJ_P0083429 Slc7a9 protein_coding protein_coding MGP_CASTEiJ_T0083430.1 MGP_CASTEiJ_G0031128.1 mouse_genomes_project 7 26781005 26799180 + MGP_CASTEiJ_P0083430 Slc7a9 protein_coding protein_coding MGP_CASTEiJ_T0083431.1 MGP_CASTEiJ_G0031128.1 mouse_genomes_project 7 26781066 26782039 + Slc7a9 protein_coding retained_intron MGP_CASTEiJ_T0083432.1 MGP_CASTEiJ_G0031128.1 mouse_genomes_project 7 26781068 26799147 + Slc7a9 protein_coding retained_intron MGP_CASTEiJ_T0083433.1 MGP_CASTEiJ_G0031128.1 mouse_genomes_project 7 26781138 26799180 + MGP_CASTEiJ_P0083433 Slc7a9 protein_coding protein_coding MGP_CASTEiJ_T0083434.1 MGP_CASTEiJ_G0031128.1 mouse_genomes_project 7 26781804 26787522 + MGP_CASTEiJ_P0083434 Slc7a9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0015124.1 MGP_CASTEiJ_G0013287.1 mouse_genomes_project 7 3366420 3366630 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008745.1 MGP_CASTEiJ_G0007065.1 mouse_genomes_project 7 94151070 94154272 + Gm10605 lincRNA lincRNA MGP_CASTEiJ_T0008746.1 MGP_CASTEiJ_G0007065.1 mouse_genomes_project 7 94151273 94156832 + Gm10605 lincRNA lincRNA MGP_CASTEiJ_T0087573.1 MGP_CASTEiJ_G0032225.1 mouse_genomes_project 7 137810991 137827993 + MGP_CASTEiJ_P0087573 Psmd13 protein_coding protein_coding MGP_CASTEiJ_T0087574.1 MGP_CASTEiJ_G0032225.1 mouse_genomes_project 7 137811437 137827263 + Psmd13 protein_coding retained_intron MGP_CASTEiJ_T0087575.1 MGP_CASTEiJ_G0032225.1 mouse_genomes_project 7 137811452 137816280 + Psmd13 protein_coding processed_transcript MGP_CASTEiJ_T0087576.1 MGP_CASTEiJ_G0032225.1 mouse_genomes_project 7 137811461 137815878 + Psmd13 protein_coding processed_transcript MGP_CASTEiJ_T0087577.1 MGP_CASTEiJ_G0032225.1 mouse_genomes_project 7 137811475 137818728 + Psmd13 protein_coding processed_transcript MGP_CASTEiJ_T0087578.1 MGP_CASTEiJ_G0032225.1 mouse_genomes_project 7 137811490 137816193 + Psmd13 protein_coding retained_intron MGP_CASTEiJ_T0087579.1 MGP_CASTEiJ_G0032225.1 mouse_genomes_project 7 137811495 137827639 + MGP_CASTEiJ_P0087579 Psmd13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087580.1 MGP_CASTEiJ_G0032225.1 mouse_genomes_project 7 137811495 137827584 + MGP_CASTEiJ_P0087580 Psmd13 protein_coding protein_coding MGP_CASTEiJ_T0087581.1 MGP_CASTEiJ_G0032225.1 mouse_genomes_project 7 137811495 137827639 + MGP_CASTEiJ_P0087581 Psmd13 protein_coding protein_coding MGP_CASTEiJ_T0087582.1 MGP_CASTEiJ_G0032225.1 mouse_genomes_project 7 137812523 137815446 + Psmd13 protein_coding processed_transcript MGP_CASTEiJ_T0087583.1 MGP_CASTEiJ_G0032225.1 mouse_genomes_project 7 137818408 137827746 + MGP_CASTEiJ_P0087583 Psmd13 protein_coding protein_coding MGP_CASTEiJ_T0087584.1 MGP_CASTEiJ_G0032225.1 mouse_genomes_project 7 137819397 137827191 + Psmd13 protein_coding retained_intron MGP_CASTEiJ_T0087585.1 MGP_CASTEiJ_G0032225.1 mouse_genomes_project 7 137823809 137827994 + MGP_CASTEiJ_P0087585 Psmd13 protein_coding protein_coding MGP_CASTEiJ_T0086235.1 MGP_CASTEiJ_G0031930.1 mouse_genomes_project 7 114202056 114310344 + MGP_CASTEiJ_P0086235 9030624J02Rik protein_coding protein_coding MGP_CASTEiJ_T0086236.1 MGP_CASTEiJ_G0031930.1 mouse_genomes_project 7 114202522 114246352 + 9030624J02Rik protein_coding processed_transcript MGP_CASTEiJ_T0086237.1 MGP_CASTEiJ_G0031930.1 mouse_genomes_project 7 114202537 114308876 + MGP_CASTEiJ_P0086237 9030624J02Rik protein_coding protein_coding MGP_CASTEiJ_T0086238.1 MGP_CASTEiJ_G0031930.1 mouse_genomes_project 7 114202537 114224474 + MGP_CASTEiJ_P0086238 9030624J02Rik protein_coding protein_coding MGP_CASTEiJ_T0086239.1 MGP_CASTEiJ_G0031930.1 mouse_genomes_project 7 114202537 114308866 + MGP_CASTEiJ_P0086239 9030624J02Rik protein_coding protein_coding MGP_CASTEiJ_T0086240.1 MGP_CASTEiJ_G0031930.1 mouse_genomes_project 7 114202539 114210663 + 9030624J02Rik protein_coding retained_intron MGP_CASTEiJ_T0086241.1 MGP_CASTEiJ_G0031930.1 mouse_genomes_project 7 114210894 114228751 + 9030624J02Rik protein_coding retained_intron MGP_CASTEiJ_T0086242.1 MGP_CASTEiJ_G0031930.1 mouse_genomes_project 7 114215104 114216644 + 9030624J02Rik protein_coding retained_intron MGP_CASTEiJ_T0086243.1 MGP_CASTEiJ_G0031930.1 mouse_genomes_project 7 114226412 114308874 + MGP_CASTEiJ_P0086243 9030624J02Rik protein_coding protein_coding MGP_CASTEiJ_T0086244.1 MGP_CASTEiJ_G0031930.1 mouse_genomes_project 7 114257168 114292862 + MGP_CASTEiJ_P0086244 9030624J02Rik protein_coding protein_coding MGP_CASTEiJ_T0086245.1 MGP_CASTEiJ_G0031930.1 mouse_genomes_project 7 114266360 114301425 + 9030624J02Rik protein_coding retained_intron MGP_CASTEiJ_T0086246.1 MGP_CASTEiJ_G0031930.1 mouse_genomes_project 7 114268984 114280415 + 9030624J02Rik protein_coding retained_intron MGP_CASTEiJ_T0086247.1 MGP_CASTEiJ_G0031930.1 mouse_genomes_project 7 114288318 114293086 + 9030624J02Rik protein_coding retained_intron MGP_CASTEiJ_T0086248.1 MGP_CASTEiJ_G0031930.1 mouse_genomes_project 7 114291227 114308686 + 9030624J02Rik protein_coding processed_transcript MGP_CASTEiJ_T0086425.1 MGP_CASTEiJ_G0031979.1 mouse_genomes_project 7 117801000 117813642 + MGP_CASTEiJ_P0086425 protein_coding protein_coding MGP_CASTEiJ_T0086426.1 MGP_CASTEiJ_G0031979.1 mouse_genomes_project 7 117801068 117806816 + MGP_CASTEiJ_P0086426 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086427.1 MGP_CASTEiJ_G0031979.1 mouse_genomes_project 7 117802383 117804474 + MGP_CASTEiJ_P0086427 protein_coding protein_coding MGP_CASTEiJ_T0101250.1 MGP_CASTEiJ_G0038163.1 mouse_genomes_project 7 60221299 60221436 - Gm23233 snoRNA snoRNA MGP_CASTEiJ_T0005149.1 MGP_CASTEiJ_G0004378.1 mouse_genomes_project 7 121287769 121289117 - Gm44876 antisense antisense MGP_CASTEiJ_T0082642.1 MGP_CASTEiJ_G0030951.1 mouse_genomes_project 7 19735819 19783300 - MGP_CASTEiJ_P0082642 Sptbn4 protein_coding protein_coding MGP_CASTEiJ_T0082643.1 MGP_CASTEiJ_G0030951.1 mouse_genomes_project 7 19735819 19785144 - MGP_CASTEiJ_P0082643 Sptbn4 protein_coding protein_coding MGP_CASTEiJ_T0082644.1 MGP_CASTEiJ_G0030951.1 mouse_genomes_project 7 19735819 19784967 - MGP_CASTEiJ_P0082644 Sptbn4 protein_coding protein_coding MGP_CASTEiJ_T0082645.1 MGP_CASTEiJ_G0030951.1 mouse_genomes_project 7 19735819 19835658 - MGP_CASTEiJ_P0082645 Sptbn4 protein_coding protein_coding MGP_CASTEiJ_T0082646.1 MGP_CASTEiJ_G0030951.1 mouse_genomes_project 7 19735823 19836746 - MGP_CASTEiJ_P0082646 Sptbn4 protein_coding protein_coding MGP_CASTEiJ_T0082647.1 MGP_CASTEiJ_G0030951.1 mouse_genomes_project 7 19822768 19836746 - MGP_CASTEiJ_P0082647 Sptbn4 protein_coding protein_coding MGP_CASTEiJ_T0082648.1 MGP_CASTEiJ_G0030951.1 mouse_genomes_project 7 19835011 19835576 - Sptbn4 protein_coding processed_transcript MGP_CASTEiJ_T0084677.1 MGP_CASTEiJ_G0031423.1 mouse_genomes_project 7 72917888 72957135 + MGP_CASTEiJ_P0084677 Ticrr protein_coding protein_coding MGP_CASTEiJ_T0084678.1 MGP_CASTEiJ_G0031423.1 mouse_genomes_project 7 72917914 72919366 + Ticrr protein_coding retained_intron MGP_CASTEiJ_T0084679.1 MGP_CASTEiJ_G0031423.1 mouse_genomes_project 7 72917923 72957121 + MGP_CASTEiJ_P0084679 Ticrr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084680.1 MGP_CASTEiJ_G0031423.1 mouse_genomes_project 7 72917937 72942127 + MGP_CASTEiJ_P0084680 Ticrr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084681.1 MGP_CASTEiJ_G0031423.1 mouse_genomes_project 7 72917939 72952917 + MGP_CASTEiJ_P0084681 Ticrr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084682.1 MGP_CASTEiJ_G0031423.1 mouse_genomes_project 7 72927221 72933383 + Ticrr protein_coding processed_transcript MGP_CASTEiJ_T0084683.1 MGP_CASTEiJ_G0031423.1 mouse_genomes_project 7 72928608 72933383 + Ticrr protein_coding retained_intron MGP_CASTEiJ_T0087541.1 MGP_CASTEiJ_G0032212.1 mouse_genomes_project 7 137575743 137589524 + MGP_CASTEiJ_P0087541 Olfr53 protein_coding protein_coding MGP_CASTEiJ_T0015229.1 MGP_CASTEiJ_G0013392.1 mouse_genomes_project 7 57931343 57931662 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102538.1 MGP_CASTEiJ_G0039262.1 mouse_genomes_project 7 40791846 40792666 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0005120.1 MGP_CASTEiJ_G0004360.1 mouse_genomes_project 7 92073646 92122237 - Rsf1os2 antisense antisense MGP_CASTEiJ_T0005121.1 MGP_CASTEiJ_G0004360.1 mouse_genomes_project 7 92119115 92122315 - Rsf1os2 antisense antisense MGP_CASTEiJ_T0005122.1 MGP_CASTEiJ_G0004360.1 mouse_genomes_project 7 92121576 92122522 - Rsf1os2 antisense antisense MGP_CASTEiJ_T0086261.1 MGP_CASTEiJ_G0031933.1 mouse_genomes_project 7 114445509 114480046 - MGP_CASTEiJ_P0086261 Gprc5b protein_coding unknown_likely_coding MGP_CASTEiJ_T0086262.1 MGP_CASTEiJ_G0031933.1 mouse_genomes_project 7 114456938 114480151 - MGP_CASTEiJ_P0086262 Gprc5b protein_coding protein_coding MGP_CASTEiJ_T0081674.1 MGP_CASTEiJ_G0030663.1 mouse_genomes_project 7 3167536 3189283 + MGP_CASTEiJ_P0081674 Zscan5b protein_coding protein_coding MGP_CASTEiJ_T0081675.1 MGP_CASTEiJ_G0030663.1 mouse_genomes_project 7 3167553 3178898 + MGP_CASTEiJ_P0081675 Zscan5b protein_coding protein_coding MGP_CASTEiJ_T0081676.1 MGP_CASTEiJ_G0030663.1 mouse_genomes_project 7 3177671 3189068 + MGP_CASTEiJ_P0081676 Zscan5b protein_coding protein_coding MGP_CASTEiJ_T0011352.1 MGP_CASTEiJ_G0009540.1 mouse_genomes_project 7 31981195 31981467 + Gm24910 misc_RNA misc_RNA MGP_CASTEiJ_T0082600.1 MGP_CASTEiJ_G0030943.1 mouse_genomes_project 7 19556226 19564734 + MGP_CASTEiJ_P0082600 BC024978 protein_coding protein_coding MGP_CASTEiJ_T0082601.1 MGP_CASTEiJ_G0030943.1 mouse_genomes_project 7 19556226 19572270 + MGP_CASTEiJ_P0082601 BC024978 protein_coding protein_coding MGP_CASTEiJ_T0082602.1 MGP_CASTEiJ_G0030943.1 mouse_genomes_project 7 19557571 19564575 + MGP_CASTEiJ_P0082602 BC024978 protein_coding protein_coding MGP_CASTEiJ_T0082603.1 MGP_CASTEiJ_G0030943.1 mouse_genomes_project 7 19563045 19564734 + MGP_CASTEiJ_P0082603 BC024978 protein_coding protein_coding MGP_CASTEiJ_T0098400.1 MGP_CASTEiJ_G0035331.1 mouse_genomes_project 7 103240174 103240989 - pseudogene pseudogene MGP_CASTEiJ_T0085590.1 MGP_CASTEiJ_G0031658.1 mouse_genomes_project 7 97659486 97660431 - MGP_CASTEiJ_P0085590 Olfr569 protein_coding protein_coding MGP_CASTEiJ_T0082729.1 MGP_CASTEiJ_G0030978.1 mouse_genomes_project 7 20755367 20763832 - MGP_CASTEiJ_P0082729 protein_coding protein_coding MGP_CASTEiJ_T0082730.1 MGP_CASTEiJ_G0030978.1 mouse_genomes_project 7 20755367 20763884 - MGP_CASTEiJ_P0082730 protein_coding protein_coding MGP_CASTEiJ_T0082731.1 MGP_CASTEiJ_G0030978.1 mouse_genomes_project 7 20757723 20758944 - MGP_CASTEiJ_P0082731 protein_coding protein_coding MGP_CASTEiJ_T0086976.1 MGP_CASTEiJ_G0032078.1 mouse_genomes_project 7 123606483 123612302 + MGP_CASTEiJ_P0086976 Fbxl19 protein_coding protein_coding MGP_CASTEiJ_T0086977.1 MGP_CASTEiJ_G0032078.1 mouse_genomes_project 7 123607143 123632529 + MGP_CASTEiJ_P0086977 Fbxl19 protein_coding protein_coding MGP_CASTEiJ_T0086978.1 MGP_CASTEiJ_G0032078.1 mouse_genomes_project 7 123607712 123612305 + MGP_CASTEiJ_P0086978 Fbxl19 protein_coding protein_coding MGP_CASTEiJ_T0086979.1 MGP_CASTEiJ_G0032078.1 mouse_genomes_project 7 123607728 123633078 + MGP_CASTEiJ_P0086979 Fbxl19 protein_coding protein_coding MGP_CASTEiJ_T0086980.1 MGP_CASTEiJ_G0032078.1 mouse_genomes_project 7 123609362 123632530 + MGP_CASTEiJ_P0086980 Fbxl19 protein_coding protein_coding MGP_CASTEiJ_T0086981.1 MGP_CASTEiJ_G0032078.1 mouse_genomes_project 7 123610734 123632324 + MGP_CASTEiJ_P0086981 Fbxl19 protein_coding protein_coding MGP_CASTEiJ_T0086982.1 MGP_CASTEiJ_G0032078.1 mouse_genomes_project 7 123610861 123633085 + MGP_CASTEiJ_P0086982 Fbxl19 protein_coding protein_coding MGP_CASTEiJ_T0005077.1 MGP_CASTEiJ_G0004329.1 mouse_genomes_project 7 39200147 39220284 + Gm15700 antisense antisense MGP_CASTEiJ_T0100013.1 MGP_CASTEiJ_G0036926.1 mouse_genomes_project 7 58710541 58710639 - Gm23042 snRNA snRNA MGP_CASTEiJ_T0085653.1 MGP_CASTEiJ_G0031719.1 mouse_genomes_project 7 98892584 98893535 - MGP_CASTEiJ_P0085653 Olfr639 protein_coding protein_coding MGP_CASTEiJ_T0087331.1 MGP_CASTEiJ_G0032147.1 mouse_genomes_project 7 129851889 129868981 - MGP_CASTEiJ_P0087331 Tex36 protein_coding protein_coding MGP_CASTEiJ_T0008578.1 MGP_CASTEiJ_G0006942.1 mouse_genomes_project 7 11648360 11651825 - 9330104G04Rik lincRNA lincRNA MGP_CASTEiJ_T0008579.1 MGP_CASTEiJ_G0006942.1 mouse_genomes_project 7 11649875 11651825 - 9330104G04Rik lincRNA lincRNA MGP_CASTEiJ_T0082728.1 MGP_CASTEiJ_G0030977.1 mouse_genomes_project 7 20748978 20751404 + MGP_CASTEiJ_P0082728 Eid2b protein_coding protein_coding MGP_CASTEiJ_T0082507.1 MGP_CASTEiJ_G0030919.1 mouse_genomes_project 7 17970982 17978868 - MGP_CASTEiJ_P0082507 Tmem91 protein_coding protein_coding MGP_CASTEiJ_T0082508.1 MGP_CASTEiJ_G0030919.1 mouse_genomes_project 7 17970985 17977175 - MGP_CASTEiJ_P0082508 Tmem91 protein_coding protein_coding MGP_CASTEiJ_T0082509.1 MGP_CASTEiJ_G0030919.1 mouse_genomes_project 7 17971085 17978749 - MGP_CASTEiJ_P0082509 Tmem91 protein_coding protein_coding MGP_CASTEiJ_T0082510.1 MGP_CASTEiJ_G0030919.1 mouse_genomes_project 7 17971085 17978792 - MGP_CASTEiJ_P0082510 Tmem91 protein_coding protein_coding MGP_CASTEiJ_T0082511.1 MGP_CASTEiJ_G0030919.1 mouse_genomes_project 7 17971905 17978821 - Tmem91 protein_coding retained_intron MGP_CASTEiJ_T0082512.1 MGP_CASTEiJ_G0030919.1 mouse_genomes_project 7 17973053 17978820 - Tmem91 protein_coding retained_intron MGP_CASTEiJ_T0010565.1 MGP_CASTEiJ_G0008753.1 mouse_genomes_project 7 46732928 46733057 - Mir6238 miRNA miRNA MGP_CASTEiJ_T0081351.1 MGP_CASTEiJ_G0030585.1 mouse_genomes_project 7 33350 44651 - AU018091 protein_coding processed_transcript MGP_CASTEiJ_T0081352.1 MGP_CASTEiJ_G0030585.1 mouse_genomes_project 7 33350 51005 - MGP_CASTEiJ_P0081352 AU018091 protein_coding protein_coding MGP_CASTEiJ_T0081353.1 MGP_CASTEiJ_G0030585.1 mouse_genomes_project 7 42511 50910 - MGP_CASTEiJ_P0081353 AU018091 protein_coding protein_coding MGP_CASTEiJ_T0086249.1 MGP_CASTEiJ_G0031931.1 mouse_genomes_project 7 114309606 114323415 - MGP_CASTEiJ_P0086249 Knop1 protein_coding protein_coding MGP_CASTEiJ_T0086250.1 MGP_CASTEiJ_G0031931.1 mouse_genomes_project 7 114309606 114323415 - MGP_CASTEiJ_P0086250 Knop1 protein_coding protein_coding MGP_CASTEiJ_T0086251.1 MGP_CASTEiJ_G0031931.1 mouse_genomes_project 7 114309621 114323418 - MGP_CASTEiJ_P0086251 Knop1 protein_coding protein_coding MGP_CASTEiJ_T0086252.1 MGP_CASTEiJ_G0031931.1 mouse_genomes_project 7 114311163 114323101 - MGP_CASTEiJ_P0086252 Knop1 protein_coding protein_coding MGP_CASTEiJ_T0086253.1 MGP_CASTEiJ_G0031931.1 mouse_genomes_project 7 114312874 114323019 - MGP_CASTEiJ_P0086253 Knop1 protein_coding protein_coding MGP_CASTEiJ_T0086254.1 MGP_CASTEiJ_G0031931.1 mouse_genomes_project 7 114313138 114323671 - MGP_CASTEiJ_P0086254 Knop1 protein_coding protein_coding MGP_CASTEiJ_T0086255.1 MGP_CASTEiJ_G0031931.1 mouse_genomes_project 7 114320176 114321702 - MGP_CASTEiJ_P0086255 Knop1 protein_coding protein_coding MGP_CASTEiJ_T0100007.1 MGP_CASTEiJ_G0036920.1 mouse_genomes_project 7 38475832 38475917 - Gm22098 snRNA snRNA MGP_CASTEiJ_T0015216.1 MGP_CASTEiJ_G0013379.1 mouse_genomes_project 7 44250937 44251057 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084385.1 MGP_CASTEiJ_G0031372.1 mouse_genomes_project 7 57046863 57290445 + MGP_CASTEiJ_P0084385 Apba2 protein_coding protein_coding MGP_CASTEiJ_T0084386.1 MGP_CASTEiJ_G0031372.1 mouse_genomes_project 7 57047106 57229634 + MGP_CASTEiJ_P0084386 Apba2 protein_coding protein_coding MGP_CASTEiJ_T0084387.1 MGP_CASTEiJ_G0031372.1 mouse_genomes_project 7 57047295 57229698 + MGP_CASTEiJ_P0084387 Apba2 protein_coding protein_coding MGP_CASTEiJ_T0084388.1 MGP_CASTEiJ_G0031372.1 mouse_genomes_project 7 57173065 57290425 + MGP_CASTEiJ_P0084388 Apba2 protein_coding protein_coding MGP_CASTEiJ_T0084389.1 MGP_CASTEiJ_G0031372.1 mouse_genomes_project 7 57221551 57311838 + MGP_CASTEiJ_P0084389 Apba2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084390.1 MGP_CASTEiJ_G0031372.1 mouse_genomes_project 7 57264825 57280102 + Apba2 protein_coding processed_transcript MGP_CASTEiJ_T0084391.1 MGP_CASTEiJ_G0031372.1 mouse_genomes_project 7 57279428 57289931 + Apba2 protein_coding processed_transcript MGP_CASTEiJ_T0084392.1 MGP_CASTEiJ_G0031372.1 mouse_genomes_project 7 57280166 57289970 + MGP_CASTEiJ_P0084392 Apba2 protein_coding protein_coding MGP_CASTEiJ_T0101823.1 MGP_CASTEiJ_G0038583.1 mouse_genomes_project 7 22138786 22166295 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0101824.1 MGP_CASTEiJ_G0038583.1 mouse_genomes_project 7 22140722 22156838 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0085650.1 MGP_CASTEiJ_G0031716.1 mouse_genomes_project 7 98793639 98794593 + MGP_CASTEiJ_P0085650 Olfr632 protein_coding protein_coding MGP_CASTEiJ_T0002183.1 MGP_CASTEiJ_G0002103.1 mouse_genomes_project 7 66755436 66758560 - TEC TEC MGP_CASTEiJ_T0002184.1 MGP_CASTEiJ_G0002103.1 mouse_genomes_project 7 66756398 66758453 - TEC TEC MGP_CASTEiJ_T0102476.1 MGP_CASTEiJ_G0039201.1 mouse_genomes_project 7 9597574 9598592 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101258.1 MGP_CASTEiJ_G0038171.1 mouse_genomes_project 7 93408626 93408748 + Gm23479 snoRNA snoRNA MGP_CASTEiJ_T0015139.1 MGP_CASTEiJ_G0013302.1 mouse_genomes_project 7 10599918 10600876 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081940.1 MGP_CASTEiJ_G0030764.1 mouse_genomes_project 7 11237905 11358451 - MGP_CASTEiJ_P0081940 Arhgap35 protein_coding protein_coding MGP_CASTEiJ_T0081941.1 MGP_CASTEiJ_G0030764.1 mouse_genomes_project 7 11240432 11358395 - MGP_CASTEiJ_P0081941 Arhgap35 protein_coding protein_coding MGP_CASTEiJ_T0084443.1 MGP_CASTEiJ_G0031383.1 mouse_genomes_project 7 58817890 58856351 - Lrrk1 protein_coding processed_transcript MGP_CASTEiJ_T0084444.1 MGP_CASTEiJ_G0031383.1 mouse_genomes_project 7 58852578 58989019 - MGP_CASTEiJ_P0084444 Lrrk1 protein_coding protein_coding MGP_CASTEiJ_T0084445.1 MGP_CASTEiJ_G0031383.1 mouse_genomes_project 7 58852585 58859617 - Lrrk1 protein_coding retained_intron MGP_CASTEiJ_T0084446.1 MGP_CASTEiJ_G0031383.1 mouse_genomes_project 7 58853018 58876403 - MGP_CASTEiJ_P0084446 Lrrk1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084447.1 MGP_CASTEiJ_G0031383.1 mouse_genomes_project 7 58860235 58863837 - Lrrk1 protein_coding retained_intron MGP_CASTEiJ_T0084448.1 MGP_CASTEiJ_G0031383.1 mouse_genomes_project 7 58937748 58939534 - Lrrk1 protein_coding processed_transcript MGP_CASTEiJ_T0084449.1 MGP_CASTEiJ_G0031383.1 mouse_genomes_project 7 58937916 58988976 - Lrrk1 protein_coding retained_intron MGP_CASTEiJ_T0098648.1 MGP_CASTEiJ_G0035579.1 mouse_genomes_project 7 84426803 84426916 + n-R5s155 rRNA rRNA MGP_CASTEiJ_T0100019.1 MGP_CASTEiJ_G0036932.1 mouse_genomes_project 7 82188521 82188585 - Gm24249 snRNA snRNA MGP_CASTEiJ_T0085929.1 MGP_CASTEiJ_G0031867.1 mouse_genomes_project 7 104408408 104456841 - MGP_CASTEiJ_P0085929 Trim66 protein_coding protein_coding MGP_CASTEiJ_T0085930.1 MGP_CASTEiJ_G0031867.1 mouse_genomes_project 7 104412900 104473262 - MGP_CASTEiJ_P0085930 Trim66 protein_coding protein_coding MGP_CASTEiJ_T0085931.1 MGP_CASTEiJ_G0031867.1 mouse_genomes_project 7 104412900 104473262 - MGP_CASTEiJ_P0085931 Trim66 protein_coding protein_coding MGP_CASTEiJ_T0085932.1 MGP_CASTEiJ_G0031867.1 mouse_genomes_project 7 104431465 104438594 - Trim66 protein_coding processed_transcript MGP_CASTEiJ_T0015176.1 MGP_CASTEiJ_G0013339.1 mouse_genomes_project 7 24081135 24081270 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0087310.1 MGP_CASTEiJ_G0032145.1 mouse_genomes_project 7 129169612 129225077 + MGP_CASTEiJ_P0087310 Zranb1 protein_coding protein_coding MGP_CASTEiJ_T0087311.1 MGP_CASTEiJ_G0032145.1 mouse_genomes_project 7 129221993 129223895 + Zranb1 protein_coding retained_intron MGP_CASTEiJ_T0085742.1 MGP_CASTEiJ_G0031779.1 mouse_genomes_project 7 100665495 100669561 + MGP_CASTEiJ_P0085742 Smpd1 protein_coding protein_coding MGP_CASTEiJ_T0008774.1 MGP_CASTEiJ_G0007081.1 mouse_genomes_project 7 116841002 116881018 + Gm45079 lincRNA lincRNA MGP_CASTEiJ_T0011372.1 MGP_CASTEiJ_G0009560.1 mouse_genomes_project 7 140374979 140375098 + Gm27803 misc_RNA misc_RNA MGP_CASTEiJ_T0102469.1 MGP_CASTEiJ_G0039194.1 mouse_genomes_project 7 8649417 8649853 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0081740.1 MGP_CASTEiJ_G0030700.1 mouse_genomes_project 7 7304503 7305445 + MGP_CASTEiJ_P0081740 Vmn1r78 protein_coding protein_coding MGP_CASTEiJ_T0010603.1 MGP_CASTEiJ_G0008791.1 mouse_genomes_project 7 96597716 96597812 + Gm22655 miRNA miRNA MGP_CASTEiJ_T0085845.1 MGP_CASTEiJ_G0031804.1 mouse_genomes_project 7 101792178 101793126 + MGP_CASTEiJ_P0085845 Olfr704 protein_coding protein_coding MGP_CASTEiJ_T0082522.1 MGP_CASTEiJ_G0030922.1 mouse_genomes_project 7 18016423 18024413 - MGP_CASTEiJ_P0082522 Ccdc97 protein_coding protein_coding MGP_CASTEiJ_T0082523.1 MGP_CASTEiJ_G0030922.1 mouse_genomes_project 7 18018246 18021418 - Ccdc97 protein_coding processed_transcript MGP_CASTEiJ_T0082524.1 MGP_CASTEiJ_G0030922.1 mouse_genomes_project 7 18019445 18024328 - Ccdc97 protein_coding retained_intron MGP_CASTEiJ_T0082525.1 MGP_CASTEiJ_G0030922.1 mouse_genomes_project 7 18020133 18024370 - MGP_CASTEiJ_P0082525 Ccdc97 protein_coding protein_coding MGP_CASTEiJ_T0082526.1 MGP_CASTEiJ_G0030922.1 mouse_genomes_project 7 18020221 18021706 - Ccdc97 protein_coding retained_intron MGP_CASTEiJ_T0082527.1 MGP_CASTEiJ_G0030922.1 mouse_genomes_project 7 18021215 18024331 - Ccdc97 protein_coding processed_transcript MGP_CASTEiJ_T0082528.1 MGP_CASTEiJ_G0030922.1 mouse_genomes_project 7 18021215 18024316 - Ccdc97 protein_coding processed_transcript MGP_CASTEiJ_T0082529.1 MGP_CASTEiJ_G0030922.1 mouse_genomes_project 7 18021452 18024380 - Ccdc97 protein_coding processed_transcript MGP_CASTEiJ_T0082530.1 MGP_CASTEiJ_G0030922.1 mouse_genomes_project 7 18022223 18024392 - Ccdc97 protein_coding processed_transcript MGP_CASTEiJ_T0086041.1 MGP_CASTEiJ_G0031891.1 mouse_genomes_project 7 106560632 106887296 - MGP_CASTEiJ_P0086041 Galnt18 protein_coding unknown_likely_coding MGP_CASTEiJ_T0086042.1 MGP_CASTEiJ_G0031891.1 mouse_genomes_project 7 106560640 106887657 - MGP_CASTEiJ_P0086042 Galnt18 protein_coding protein_coding MGP_CASTEiJ_T0086043.1 MGP_CASTEiJ_G0031891.1 mouse_genomes_project 7 106560640 106887657 - MGP_CASTEiJ_P0086043 Galnt18 protein_coding protein_coding MGP_CASTEiJ_T0082960.1 MGP_CASTEiJ_G0031030.1 mouse_genomes_project 7 22522071 22534831 - MGP_CASTEiJ_P0082960 protein_coding protein_coding MGP_CASTEiJ_T0082961.1 MGP_CASTEiJ_G0031030.1 mouse_genomes_project 7 22522080 22548631 - MGP_CASTEiJ_P0082961 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082962.1 MGP_CASTEiJ_G0031030.1 mouse_genomes_project 7 22522766 22548761 - MGP_CASTEiJ_P0082962 protein_coding protein_coding MGP_CASTEiJ_T0082963.1 MGP_CASTEiJ_G0031030.1 mouse_genomes_project 7 22528969 22548763 - protein_coding processed_transcript MGP_CASTEiJ_T0083840.1 MGP_CASTEiJ_G0031231.1 mouse_genomes_project 7 37527659 37535702 - MGP_CASTEiJ_P0083840 Prrg2 protein_coding protein_coding MGP_CASTEiJ_T0086493.1 MGP_CASTEiJ_G0031993.1 mouse_genomes_project 7 121180203 121207092 - MGP_CASTEiJ_P0086493 Nsmce1 protein_coding protein_coding MGP_CASTEiJ_T0086494.1 MGP_CASTEiJ_G0031993.1 mouse_genomes_project 7 121184963 121206895 - MGP_CASTEiJ_P0086494 Nsmce1 protein_coding protein_coding MGP_CASTEiJ_T0086495.1 MGP_CASTEiJ_G0031993.1 mouse_genomes_project 7 121185017 121192469 - Nsmce1 protein_coding processed_transcript MGP_CASTEiJ_T0002205.1 MGP_CASTEiJ_G0002124.1 mouse_genomes_project 7 72763252 72765130 + TEC TEC MGP_CASTEiJ_T0084161.1 MGP_CASTEiJ_G0031316.1 mouse_genomes_project 7 40044373 40174993 - MGP_CASTEiJ_P0084161 protein_coding protein_coding MGP_CASTEiJ_T0085887.1 MGP_CASTEiJ_G0031839.1 mouse_genomes_project 7 103064254 103065352 - MGP_CASTEiJ_P0085887 protein_coding protein_coding MGP_CASTEiJ_T0081633.1 MGP_CASTEiJ_G0030641.1 mouse_genomes_project 7 1954607 1962611 - MGP_CASTEiJ_P0081633 Fiz1 protein_coding protein_coding MGP_CASTEiJ_T0081634.1 MGP_CASTEiJ_G0030641.1 mouse_genomes_project 7 1954607 1965556 - MGP_CASTEiJ_P0081634 Fiz1 protein_coding protein_coding MGP_CASTEiJ_T0081635.1 MGP_CASTEiJ_G0030641.1 mouse_genomes_project 7 1954607 1965112 - MGP_CASTEiJ_P0081635 Fiz1 protein_coding protein_coding MGP_CASTEiJ_T0085642.1 MGP_CASTEiJ_G0031708.1 mouse_genomes_project 7 98645165 98666248 - MGP_CASTEiJ_P0085642 protein_coding protein_coding MGP_CASTEiJ_T0086122.1 MGP_CASTEiJ_G0031911.1 mouse_genomes_project 7 109956278 109962281 + MGP_CASTEiJ_P0086122 Calcb protein_coding protein_coding MGP_CASTEiJ_T0086123.1 MGP_CASTEiJ_G0031911.1 mouse_genomes_project 7 109956308 109961979 + MGP_CASTEiJ_P0086123 Calcb protein_coding protein_coding MGP_CASTEiJ_T0086124.1 MGP_CASTEiJ_G0031911.1 mouse_genomes_project 7 109957176 109957805 + MGP_CASTEiJ_P0086124 Calcb protein_coding protein_coding MGP_CASTEiJ_T0101275.1 MGP_CASTEiJ_G0038188.1 mouse_genomes_project 7 114802626 114802752 - Gm23321 snoRNA snoRNA MGP_CASTEiJ_T0081619.1 MGP_CASTEiJ_G0030636.1 mouse_genomes_project 7 1863353 1866086 + MGP_CASTEiJ_P0081619 Nat14 protein_coding protein_coding MGP_CASTEiJ_T0087386.1 MGP_CASTEiJ_G0032160.1 mouse_genomes_project 7 131980345 131983594 + MGP_CASTEiJ_P0087386 Foxi2 protein_coding protein_coding MGP_CASTEiJ_T0083948.1 MGP_CASTEiJ_G0031262.1 mouse_genomes_project 7 38037771 38055048 - MGP_CASTEiJ_P0083948 Nucb1 protein_coding protein_coding MGP_CASTEiJ_T0083949.1 MGP_CASTEiJ_G0031262.1 mouse_genomes_project 7 38039071 38048128 - MGP_CASTEiJ_P0083949 Nucb1 protein_coding protein_coding MGP_CASTEiJ_T0083950.1 MGP_CASTEiJ_G0031262.1 mouse_genomes_project 7 38039952 38040389 - Nucb1 protein_coding processed_transcript MGP_CASTEiJ_T0083951.1 MGP_CASTEiJ_G0031262.1 mouse_genomes_project 7 38040326 38048122 - Nucb1 protein_coding processed_transcript MGP_CASTEiJ_T0083952.1 MGP_CASTEiJ_G0031262.1 mouse_genomes_project 7 38043033 38043702 - Nucb1 protein_coding retained_intron MGP_CASTEiJ_T0083953.1 MGP_CASTEiJ_G0031262.1 mouse_genomes_project 7 38043590 38054957 - MGP_CASTEiJ_P0083953 Nucb1 protein_coding protein_coding MGP_CASTEiJ_T0083954.1 MGP_CASTEiJ_G0031262.1 mouse_genomes_project 7 38046482 38054973 - MGP_CASTEiJ_P0083954 Nucb1 protein_coding protein_coding MGP_CASTEiJ_T0083955.1 MGP_CASTEiJ_G0031262.1 mouse_genomes_project 7 38047936 38055031 - Nucb1 protein_coding processed_transcript MGP_CASTEiJ_T0083956.1 MGP_CASTEiJ_G0031262.1 mouse_genomes_project 7 38051822 38055027 - Nucb1 protein_coding retained_intron MGP_CASTEiJ_T0086740.1 MGP_CASTEiJ_G0032031.1 mouse_genomes_project 7 122636180 122646533 - MGP_CASTEiJ_P0086740 protein_coding protein_coding MGP_CASTEiJ_T0086741.1 MGP_CASTEiJ_G0032031.1 mouse_genomes_project 7 122636799 122646724 - MGP_CASTEiJ_P0086741 protein_coding protein_coding MGP_CASTEiJ_T0086742.1 MGP_CASTEiJ_G0032031.1 mouse_genomes_project 7 122637652 122647640 - protein_coding retained_intron MGP_CASTEiJ_T0086743.1 MGP_CASTEiJ_G0032031.1 mouse_genomes_project 7 122637799 122647121 - MGP_CASTEiJ_P0086743 protein_coding protein_coding MGP_CASTEiJ_T0086744.1 MGP_CASTEiJ_G0032031.1 mouse_genomes_project 7 122637901 122646993 - protein_coding processed_transcript MGP_CASTEiJ_T0086745.1 MGP_CASTEiJ_G0032031.1 mouse_genomes_project 7 122637935 122647142 - MGP_CASTEiJ_P0086745 protein_coding protein_coding MGP_CASTEiJ_T0086746.1 MGP_CASTEiJ_G0032031.1 mouse_genomes_project 7 122638037 122642946 - MGP_CASTEiJ_P0086746 protein_coding protein_coding MGP_CASTEiJ_T0086747.1 MGP_CASTEiJ_G0032031.1 mouse_genomes_project 7 122638114 122647624 - MGP_CASTEiJ_P0086747 protein_coding protein_coding MGP_CASTEiJ_T0086748.1 MGP_CASTEiJ_G0032031.1 mouse_genomes_project 7 122638149 122647044 - MGP_CASTEiJ_P0086748 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086749.1 MGP_CASTEiJ_G0032031.1 mouse_genomes_project 7 122641414 122647130 - protein_coding retained_intron MGP_CASTEiJ_T0086750.1 MGP_CASTEiJ_G0032031.1 mouse_genomes_project 7 122642891 122647052 - protein_coding processed_transcript MGP_CASTEiJ_T0086751.1 MGP_CASTEiJ_G0032031.1 mouse_genomes_project 7 122642914 122647105 - MGP_CASTEiJ_P0086751 protein_coding protein_coding MGP_CASTEiJ_T0086752.1 MGP_CASTEiJ_G0032031.1 mouse_genomes_project 7 122642929 122646909 - MGP_CASTEiJ_P0086752 protein_coding protein_coding MGP_CASTEiJ_T0086753.1 MGP_CASTEiJ_G0032031.1 mouse_genomes_project 7 122646501 122647109 - protein_coding processed_transcript MGP_CASTEiJ_T0008657.1 MGP_CASTEiJ_G0007006.1 mouse_genomes_project 7 58351436 58354619 + 1810008I18Rik lincRNA lincRNA MGP_CASTEiJ_T0008658.1 MGP_CASTEiJ_G0007006.1 mouse_genomes_project 7 58352359 58354782 + 1810008I18Rik lincRNA lincRNA MGP_CASTEiJ_T0085005.1 MGP_CASTEiJ_G0031510.1 mouse_genomes_project 7 80724540 80740808 + MGP_CASTEiJ_P0085005 protein_coding protein_coding MGP_CASTEiJ_T0083928.1 MGP_CASTEiJ_G0031255.1 mouse_genomes_project 7 37941402 37942444 + MGP_CASTEiJ_P0083928 Lhb protein_coding protein_coding MGP_CASTEiJ_T0017592.1 MGP_CASTEiJ_G0014979.1 mouse_genomes_project 7 35888768 36008785 - 2310002F09Rik processed_transcript antisense MGP_CASTEiJ_T0017593.1 MGP_CASTEiJ_G0014979.1 mouse_genomes_project 7 35952126 35955473 - 2310002F09Rik processed_transcript antisense MGP_CASTEiJ_T0017594.1 MGP_CASTEiJ_G0014979.1 mouse_genomes_project 7 35964365 35964970 - 2310002F09Rik processed_transcript TEC MGP_CASTEiJ_T0017595.1 MGP_CASTEiJ_G0014979.1 mouse_genomes_project 7 36007663 36008798 - 2310002F09Rik processed_transcript antisense MGP_CASTEiJ_T0084234.1 MGP_CASTEiJ_G0031341.1 mouse_genomes_project 7 44882740 44891484 - MGP_CASTEiJ_P0084234 Svip protein_coding protein_coding MGP_CASTEiJ_T0101825.1 MGP_CASTEiJ_G0038584.1 mouse_genomes_project 7 24787534 24808339 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101826.1 MGP_CASTEiJ_G0038584.1 mouse_genomes_project 7 24787700 24788969 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0087074.1 MGP_CASTEiJ_G0032096.1 mouse_genomes_project 7 123884053 123891411 + MGP_CASTEiJ_P0087074 Trim72 protein_coding protein_coding MGP_CASTEiJ_T0087075.1 MGP_CASTEiJ_G0032096.1 mouse_genomes_project 7 123884483 123891053 + MGP_CASTEiJ_P0087075 Trim72 protein_coding protein_coding MGP_CASTEiJ_T0002197.1 MGP_CASTEiJ_G0002116.1 mouse_genomes_project 7 71384567 71385680 - TEC TEC MGP_CASTEiJ_T0084944.1 MGP_CASTEiJ_G0031478.1 mouse_genomes_project 7 76670037 76677356 + MGP_CASTEiJ_P0084944 protein_coding protein_coding MGP_CASTEiJ_T0082903.1 MGP_CASTEiJ_G0031018.1 mouse_genomes_project 7 21805696 21833802 - MGP_CASTEiJ_P0082903 Spint2 protein_coding protein_coding MGP_CASTEiJ_T0082904.1 MGP_CASTEiJ_G0031018.1 mouse_genomes_project 7 21805696 21833802 - MGP_CASTEiJ_P0082904 Spint2 protein_coding protein_coding MGP_CASTEiJ_T0102497.1 MGP_CASTEiJ_G0030894.1 mouse_genomes_project 7 17188957 17189547 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015132.1 MGP_CASTEiJ_G0013295.1 mouse_genomes_project 7 8921520 8923091 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082011.1 MGP_CASTEiJ_G0030780.1 mouse_genomes_project 7 11824338 11859789 - MGP_CASTEiJ_P0082011 Hif3a protein_coding protein_coding MGP_CASTEiJ_T0082012.1 MGP_CASTEiJ_G0030780.1 mouse_genomes_project 7 11828560 11854061 - MGP_CASTEiJ_P0082012 Hif3a protein_coding protein_coding MGP_CASTEiJ_T0082013.1 MGP_CASTEiJ_G0030780.1 mouse_genomes_project 7 11842728 11844262 - MGP_CASTEiJ_P0082013 Hif3a protein_coding protein_coding MGP_CASTEiJ_T0082014.1 MGP_CASTEiJ_G0030780.1 mouse_genomes_project 7 11845559 11859746 - MGP_CASTEiJ_P0082014 Hif3a protein_coding protein_coding MGP_CASTEiJ_T0086992.1 MGP_CASTEiJ_G0032081.1 mouse_genomes_project 7 123649627 123669180 + MGP_CASTEiJ_P0086992 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086993.1 MGP_CASTEiJ_G0032081.1 mouse_genomes_project 7 123664777 123667400 + MGP_CASTEiJ_P0086993 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085585.1 MGP_CASTEiJ_G0031654.1 mouse_genomes_project 7 97525852 97546953 - MGP_CASTEiJ_P0085585 Olfr78 protein_coding protein_coding MGP_CASTEiJ_T0085586.1 MGP_CASTEiJ_G0031654.1 mouse_genomes_project 7 97525852 97546953 - MGP_CASTEiJ_P0085586 Olfr78 protein_coding protein_coding MGP_CASTEiJ_T0088037.1 MGP_CASTEiJ_G0032311.1 mouse_genomes_project 7 142037820 142042454 + MGP_CASTEiJ_P0088037 Fgf3 protein_coding protein_coding MGP_CASTEiJ_T0088038.1 MGP_CASTEiJ_G0032311.1 mouse_genomes_project 7 142038332 142044169 + MGP_CASTEiJ_P0088038 Fgf3 protein_coding protein_coding MGP_CASTEiJ_T0002210.1 MGP_CASTEiJ_G0002129.1 mouse_genomes_project 7 73401520 73403641 - TEC TEC MGP_CASTEiJ_T0082671.1 MGP_CASTEiJ_G0030958.1 mouse_genomes_project 7 19948571 19977903 + MGP_CASTEiJ_P0082671 2310022A10Rik protein_coding protein_coding MGP_CASTEiJ_T0082672.1 MGP_CASTEiJ_G0030958.1 mouse_genomes_project 7 19948605 19970424 + MGP_CASTEiJ_P0082672 2310022A10Rik protein_coding protein_coding MGP_CASTEiJ_T0082673.1 MGP_CASTEiJ_G0030958.1 mouse_genomes_project 7 19948608 19949407 + 2310022A10Rik protein_coding processed_transcript MGP_CASTEiJ_T0082674.1 MGP_CASTEiJ_G0030958.1 mouse_genomes_project 7 19948624 19977903 + MGP_CASTEiJ_P0082674 2310022A10Rik protein_coding protein_coding MGP_CASTEiJ_T0082675.1 MGP_CASTEiJ_G0030958.1 mouse_genomes_project 7 19954763 19977898 + MGP_CASTEiJ_P0082675 2310022A10Rik protein_coding protein_coding MGP_CASTEiJ_T0082676.1 MGP_CASTEiJ_G0030958.1 mouse_genomes_project 7 19954784 19969039 + 2310022A10Rik protein_coding retained_intron MGP_CASTEiJ_T0082677.1 MGP_CASTEiJ_G0030958.1 mouse_genomes_project 7 19959458 19976437 + MGP_CASTEiJ_P0082677 2310022A10Rik protein_coding protein_coding MGP_CASTEiJ_T0082678.1 MGP_CASTEiJ_G0030958.1 mouse_genomes_project 7 19970172 19976223 + 2310022A10Rik protein_coding processed_transcript MGP_CASTEiJ_T0085675.1 MGP_CASTEiJ_G0031734.1 mouse_genomes_project 7 99199421 99239893 - protein_coding processed_transcript MGP_CASTEiJ_T0098399.1 MGP_CASTEiJ_G0035330.1 mouse_genomes_project 7 99686122 99687081 + pseudogene pseudogene MGP_CASTEiJ_T0083017.1 MGP_CASTEiJ_G0031047.1 mouse_genomes_project 7 22915715 22926120 + MGP_CASTEiJ_P0083017 protein_coding protein_coding MGP_CASTEiJ_T0102531.1 MGP_CASTEiJ_G0039255.1 mouse_genomes_project 7 40250547 40792666 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002192.1 MGP_CASTEiJ_G0002111.1 mouse_genomes_project 7 69142642 69144699 + TEC TEC MGP_CASTEiJ_T0085879.1 MGP_CASTEiJ_G0031831.1 mouse_genomes_project 7 102914819 102916994 + MGP_CASTEiJ_P0085879 Olfr477 protein_coding protein_coding MGP_CASTEiJ_T0085849.1 MGP_CASTEiJ_G0031808.1 mouse_genomes_project 7 101842271 101844956 + MGP_CASTEiJ_P0085849 protein_coding protein_coding MGP_CASTEiJ_T0082986.1 MGP_CASTEiJ_G0031038.1 mouse_genomes_project 7 22738777 22751134 + MGP_CASTEiJ_P0082986 Zfp382 protein_coding protein_coding MGP_CASTEiJ_T0082987.1 MGP_CASTEiJ_G0031038.1 mouse_genomes_project 7 22738805 22747319 + MGP_CASTEiJ_P0082987 Zfp382 protein_coding protein_coding MGP_CASTEiJ_T0082988.1 MGP_CASTEiJ_G0031038.1 mouse_genomes_project 7 22741529 22750014 + Zfp382 protein_coding retained_intron MGP_CASTEiJ_T0002125.1 MGP_CASTEiJ_G0002045.1 mouse_genomes_project 7 1566982 1568277 + TEC TEC MGP_CASTEiJ_T0085636.1 MGP_CASTEiJ_G0031702.1 mouse_genomes_project 7 98583750 98584816 - MGP_CASTEiJ_P0085636 Olfr630 protein_coding protein_coding MGP_CASTEiJ_T0084479.1 MGP_CASTEiJ_G0031389.1 mouse_genomes_project 7 59861742 59867658 + MGP_CASTEiJ_P0084479 Lysmd4 protein_coding protein_coding MGP_CASTEiJ_T0084480.1 MGP_CASTEiJ_G0031389.1 mouse_genomes_project 7 59861814 59867658 + MGP_CASTEiJ_P0084480 Lysmd4 protein_coding protein_coding MGP_CASTEiJ_T0010580.1 MGP_CASTEiJ_G0008768.1 mouse_genomes_project 7 54343404 54343467 - Mir344b miRNA miRNA MGP_CASTEiJ_T0082092.1 MGP_CASTEiJ_G0030806.1 mouse_genomes_project 7 13880417 13900411 + MGP_CASTEiJ_P0082092 Fbxo46 protein_coding protein_coding MGP_CASTEiJ_T0082093.1 MGP_CASTEiJ_G0030806.1 mouse_genomes_project 7 13892264 13898063 + MGP_CASTEiJ_P0082093 Fbxo46 protein_coding protein_coding MGP_CASTEiJ_T0101656.1 MGP_CASTEiJ_G0038495.1 mouse_genomes_project 7 31019913 31020258 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101657.1 MGP_CASTEiJ_G0038495.1 mouse_genomes_project 7 31020192 31023574 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0008742.1 MGP_CASTEiJ_G0007062.1 mouse_genomes_project 7 93002421 93027438 - A630091E08Rik lincRNA lincRNA MGP_CASTEiJ_T0085623.1 MGP_CASTEiJ_G0031689.1 mouse_genomes_project 7 98337277 98338249 - MGP_CASTEiJ_P0085623 Olfr612 protein_coding protein_coding MGP_CASTEiJ_T0015283.1 MGP_CASTEiJ_G0013446.1 mouse_genomes_project 7 95903020 95903958 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082713.1 MGP_CASTEiJ_G0030971.1 mouse_genomes_project 7 20536125 20576001 + MGP_CASTEiJ_P0082713 Fcgbp protein_coding protein_coding MGP_CASTEiJ_T0082714.1 MGP_CASTEiJ_G0030971.1 mouse_genomes_project 7 20536467 20548284 + Fcgbp protein_coding retained_intron MGP_CASTEiJ_T0082716.1 MGP_CASTEiJ_G0030971.1 mouse_genomes_project 7 20569183 20576000 + Fcgbp protein_coding retained_intron MGP_CASTEiJ_T0082717.1 MGP_CASTEiJ_G0030971.1 mouse_genomes_project 7 20571004 20576000 + Fcgbp protein_coding processed_transcript MGP_CASTEiJ_T0102565.1 MGP_CASTEiJ_G0039289.1 mouse_genomes_project 7 79512560 79792444 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0082559.1 MGP_CASTEiJ_G0030930.1 mouse_genomes_project 7 18804845 18842462 + MGP_CASTEiJ_P0082559 Nlrp9a protein_coding protein_coding MGP_CASTEiJ_T0082560.1 MGP_CASTEiJ_G0030930.1 mouse_genomes_project 7 18804887 18842458 + MGP_CASTEiJ_P0082560 Nlrp9a protein_coding protein_coding MGP_CASTEiJ_T0082561.1 MGP_CASTEiJ_G0030930.1 mouse_genomes_project 7 18804893 18832413 + Nlrp9a protein_coding processed_transcript MGP_CASTEiJ_T0082562.1 MGP_CASTEiJ_G0030930.1 mouse_genomes_project 7 18818684 18842297 + MGP_CASTEiJ_P0082562 Nlrp9a protein_coding protein_coding MGP_CASTEiJ_T0082563.1 MGP_CASTEiJ_G0030930.1 mouse_genomes_project 7 18818684 18844084 + MGP_CASTEiJ_P0082563 Nlrp9a protein_coding protein_coding MGP_CASTEiJ_T0002190.1 MGP_CASTEiJ_G0002109.1 mouse_genomes_project 7 68663174 68666800 + TEC TEC MGP_CASTEiJ_T0084099.1 MGP_CASTEiJ_G0031300.1 mouse_genomes_project 7 39294984 39316349 - MGP_CASTEiJ_P0084099 Tph1 protein_coding protein_coding MGP_CASTEiJ_T0084100.1 MGP_CASTEiJ_G0031300.1 mouse_genomes_project 7 39295015 39321612 - MGP_CASTEiJ_P0084100 Tph1 protein_coding protein_coding MGP_CASTEiJ_T0084101.1 MGP_CASTEiJ_G0031300.1 mouse_genomes_project 7 39295280 39314276 - MGP_CASTEiJ_P0084101 Tph1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084102.1 MGP_CASTEiJ_G0031300.1 mouse_genomes_project 7 39295280 39314263 - MGP_CASTEiJ_P0084102 Tph1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084103.1 MGP_CASTEiJ_G0031300.1 mouse_genomes_project 7 39298828 39300417 - Tph1 protein_coding retained_intron MGP_CASTEiJ_T0084104.1 MGP_CASTEiJ_G0031300.1 mouse_genomes_project 7 39305825 39309619 - Tph1 protein_coding retained_intron MGP_CASTEiJ_T0084105.1 MGP_CASTEiJ_G0031300.1 mouse_genomes_project 7 39308968 39311230 - Tph1 protein_coding retained_intron MGP_CASTEiJ_T0084106.1 MGP_CASTEiJ_G0031300.1 mouse_genomes_project 7 39309288 39316315 - MGP_CASTEiJ_P0084106 Tph1 protein_coding protein_coding MGP_CASTEiJ_T0008635.1 MGP_CASTEiJ_G0006989.1 mouse_genomes_project 7 35684041 35689212 - Gm2511 lincRNA lincRNA MGP_CASTEiJ_T0008636.1 MGP_CASTEiJ_G0006989.1 mouse_genomes_project 7 35684044 35691889 - Gm2511 lincRNA lincRNA MGP_CASTEiJ_T0008637.1 MGP_CASTEiJ_G0006989.1 mouse_genomes_project 7 35688459 35691454 - Gm2511 lincRNA lincRNA MGP_CASTEiJ_T0086076.1 MGP_CASTEiJ_G0031898.1 mouse_genomes_project 7 108113930 108119077 + MGP_CASTEiJ_P0086076 Rassf10 protein_coding protein_coding MGP_CASTEiJ_T0085714.1 MGP_CASTEiJ_G0031760.1 mouse_genomes_project 7 100077512 100078466 + MGP_CASTEiJ_P0085714 Olfr676 protein_coding protein_coding MGP_CASTEiJ_T0015192.1 MGP_CASTEiJ_G0013355.1 mouse_genomes_project 7 32991984 32992724 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0004996.1 MGP_CASTEiJ_G0004273.1 mouse_genomes_project 7 302590 313640 - Gm44151 antisense antisense MGP_CASTEiJ_T0085853.1 MGP_CASTEiJ_G0031812.1 mouse_genomes_project 7 101896367 101901499 - MGP_CASTEiJ_P0085853 Olfr711 protein_coding protein_coding MGP_CASTEiJ_T0010560.1 MGP_CASTEiJ_G0008748.1 mouse_genomes_project 7 37479044 37479106 - Mir7054 miRNA miRNA MGP_CASTEiJ_T0015278.1 MGP_CASTEiJ_G0013441.1 mouse_genomes_project 7 93325464 93325826 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083445.1 MGP_CASTEiJ_G0031132.1 mouse_genomes_project 7 26940642 26999435 + MGP_CASTEiJ_P0083445 Ankrd27 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083446.1 MGP_CASTEiJ_G0031132.1 mouse_genomes_project 7 26941643 26999731 + MGP_CASTEiJ_P0083446 Ankrd27 protein_coding protein_coding MGP_CASTEiJ_T0083447.1 MGP_CASTEiJ_G0031132.1 mouse_genomes_project 7 26941649 26967898 + MGP_CASTEiJ_P0083447 Ankrd27 protein_coding protein_coding MGP_CASTEiJ_T0083448.1 MGP_CASTEiJ_G0031132.1 mouse_genomes_project 7 26941649 26959201 + MGP_CASTEiJ_P0083448 Ankrd27 protein_coding protein_coding MGP_CASTEiJ_T0083449.1 MGP_CASTEiJ_G0031132.1 mouse_genomes_project 7 26941654 26995256 + MGP_CASTEiJ_P0083449 Ankrd27 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083450.1 MGP_CASTEiJ_G0031132.1 mouse_genomes_project 7 26941674 26961428 + MGP_CASTEiJ_P0083450 Ankrd27 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083451.1 MGP_CASTEiJ_G0031132.1 mouse_genomes_project 7 26941676 26999731 + MGP_CASTEiJ_P0083451 Ankrd27 protein_coding protein_coding MGP_CASTEiJ_T0083452.1 MGP_CASTEiJ_G0031132.1 mouse_genomes_project 7 26958983 26961898 + Ankrd27 protein_coding retained_intron MGP_CASTEiJ_T0083453.1 MGP_CASTEiJ_G0031132.1 mouse_genomes_project 7 26970762 26974056 + Ankrd27 protein_coding retained_intron MGP_CASTEiJ_T0083454.1 MGP_CASTEiJ_G0031132.1 mouse_genomes_project 7 26974959 26987442 + MGP_CASTEiJ_P0083454 Ankrd27 protein_coding protein_coding MGP_CASTEiJ_T0083455.1 MGP_CASTEiJ_G0031132.1 mouse_genomes_project 7 26978542 26986537 + MGP_CASTEiJ_P0083455 Ankrd27 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0005101.1 MGP_CASTEiJ_G0004346.1 mouse_genomes_project 7 73728875 73731217 + Gm44851 antisense antisense MGP_CASTEiJ_T0017588.1 MGP_CASTEiJ_G0014975.1 mouse_genomes_project 7 19821703 19822937 + Gm44924 processed_transcript processed_transcript MGP_CASTEiJ_T0100002.1 MGP_CASTEiJ_G0036915.1 mouse_genomes_project 7 29350239 29350345 - Gm22302 snRNA snRNA MGP_CASTEiJ_T0010576.1 MGP_CASTEiJ_G0008764.1 mouse_genomes_project 7 54267272 54267338 - Mir344e miRNA miRNA MGP_CASTEiJ_T0084204.1 MGP_CASTEiJ_G0031332.1 mouse_genomes_project 7 42665431 42747645 + MGP_CASTEiJ_P0084204 Prmt3 protein_coding protein_coding MGP_CASTEiJ_T0084205.1 MGP_CASTEiJ_G0031332.1 mouse_genomes_project 7 42665431 42669570 + MGP_CASTEiJ_P0084205 Prmt3 protein_coding protein_coding MGP_CASTEiJ_T0084206.1 MGP_CASTEiJ_G0031332.1 mouse_genomes_project 7 42665522 42669228 + Prmt3 protein_coding processed_transcript MGP_CASTEiJ_T0084207.1 MGP_CASTEiJ_G0031332.1 mouse_genomes_project 7 42665522 42715274 + MGP_CASTEiJ_P0084207 Prmt3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084208.1 MGP_CASTEiJ_G0031332.1 mouse_genomes_project 7 42665524 42667699 + Prmt3 protein_coding processed_transcript MGP_CASTEiJ_T0084209.1 MGP_CASTEiJ_G0031332.1 mouse_genomes_project 7 42665629 42674389 + Prmt3 protein_coding processed_transcript MGP_CASTEiJ_T0084210.1 MGP_CASTEiJ_G0031332.1 mouse_genomes_project 7 42666932 42674419 + MGP_CASTEiJ_P0084210 Prmt3 protein_coding protein_coding MGP_CASTEiJ_T0084211.1 MGP_CASTEiJ_G0031332.1 mouse_genomes_project 7 42685674 42715470 + MGP_CASTEiJ_P0084211 Prmt3 protein_coding protein_coding MGP_CASTEiJ_T0087454.1 MGP_CASTEiJ_G0032178.1 mouse_genomes_project 7 136433007 136436434 - MGP_CASTEiJ_P0087454 Nkx6-2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087455.1 MGP_CASTEiJ_G0032178.1 mouse_genomes_project 7 136434856 136436427 - MGP_CASTEiJ_P0087455 Nkx6-2 protein_coding protein_coding MGP_CASTEiJ_T0085092.1 MGP_CASTEiJ_G0031538.1 mouse_genomes_project 7 86794375 86812211 + Ccdc90b protein_coding processed_transcript MGP_CASTEiJ_T0085093.1 MGP_CASTEiJ_G0031538.1 mouse_genomes_project 7 86794375 86832713 + MGP_CASTEiJ_P0085093 Ccdc90b protein_coding protein_coding MGP_CASTEiJ_T0085094.1 MGP_CASTEiJ_G0031538.1 mouse_genomes_project 7 86794375 86832713 + MGP_CASTEiJ_P0085094 Ccdc90b protein_coding protein_coding MGP_CASTEiJ_T0081738.1 MGP_CASTEiJ_G0030698.1 mouse_genomes_project 7 7077021 7077996 - MGP_CASTEiJ_P0081738 Vmn1r76 protein_coding protein_coding MGP_CASTEiJ_T0085594.1 MGP_CASTEiJ_G0031662.1 mouse_genomes_project 7 97727785 97728826 + MGP_CASTEiJ_P0085594 Olfr574 protein_coding protein_coding MGP_CASTEiJ_T0087470.1 MGP_CASTEiJ_G0032181.1 mouse_genomes_project 7 136784129 136814414 + MGP_CASTEiJ_P0087470 Kndc1 protein_coding protein_coding MGP_CASTEiJ_T0087471.1 MGP_CASTEiJ_G0032181.1 mouse_genomes_project 7 136784129 136832158 + MGP_CASTEiJ_P0087471 Kndc1 protein_coding protein_coding MGP_CASTEiJ_T0087472.1 MGP_CASTEiJ_G0032181.1 mouse_genomes_project 7 136784272 136804913 + MGP_CASTEiJ_P0087472 Kndc1 protein_coding protein_coding MGP_CASTEiJ_T0087473.1 MGP_CASTEiJ_G0032181.1 mouse_genomes_project 7 136814189 136832158 + Kndc1 protein_coding retained_intron MGP_CASTEiJ_T0085252.1 MGP_CASTEiJ_G0031570.1 mouse_genomes_project 7 93305816 93317274 + MGP_CASTEiJ_P0085252 Wnt11 protein_coding protein_coding MGP_CASTEiJ_T0085253.1 MGP_CASTEiJ_G0031570.1 mouse_genomes_project 7 93305816 93324526 + MGP_CASTEiJ_P0085253 Wnt11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085254.1 MGP_CASTEiJ_G0031570.1 mouse_genomes_project 7 93305835 93325926 + MGP_CASTEiJ_P0085254 Wnt11 protein_coding protein_coding MGP_CASTEiJ_T0085255.1 MGP_CASTEiJ_G0031570.1 mouse_genomes_project 7 93309532 93324466 + MGP_CASTEiJ_P0085255 Wnt11 protein_coding protein_coding MGP_CASTEiJ_T0085256.1 MGP_CASTEiJ_G0031570.1 mouse_genomes_project 7 93309585 93324284 + MGP_CASTEiJ_P0085256 Wnt11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082655.1 MGP_CASTEiJ_G0030954.1 mouse_genomes_project 7 19879803 19883043 + MGP_CASTEiJ_P0082655 Sertad1 protein_coding protein_coding MGP_CASTEiJ_T0082656.1 MGP_CASTEiJ_G0030954.1 mouse_genomes_project 7 19880268 19882234 + MGP_CASTEiJ_P0082656 Sertad1 protein_coding protein_coding MGP_CASTEiJ_T0010519.1 MGP_CASTEiJ_G0008707.1 mouse_genomes_project 7 109590 109671 + Mir290a miRNA miRNA MGP_CASTEiJ_T0015330.1 MGP_CASTEiJ_G0013493.1 mouse_genomes_project 7 132550567 132551553 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085608.1 MGP_CASTEiJ_G0031675.1 mouse_genomes_project 7 97966821 97969493 + MGP_CASTEiJ_P0085608 Olfr592 protein_coding protein_coding MGP_CASTEiJ_T0085609.1 MGP_CASTEiJ_G0031675.1 mouse_genomes_project 7 97968554 97969493 + MGP_CASTEiJ_P0085609 Olfr592 protein_coding protein_coding MGP_CASTEiJ_T0087388.1 MGP_CASTEiJ_G0032162.1 mouse_genomes_project 7 132105766 132266729 + MGP_CASTEiJ_P0087388 Ptpre protein_coding protein_coding MGP_CASTEiJ_T0082820.1 MGP_CASTEiJ_G0031001.1 mouse_genomes_project 7 21348683 21362138 + MGP_CASTEiJ_P0082820 Hnrnpl protein_coding protein_coding MGP_CASTEiJ_T0082821.1 MGP_CASTEiJ_G0031001.1 mouse_genomes_project 7 21348948 21357065 + Hnrnpl protein_coding retained_intron MGP_CASTEiJ_T0082822.1 MGP_CASTEiJ_G0031001.1 mouse_genomes_project 7 21348950 21362121 + MGP_CASTEiJ_P0082822 Hnrnpl protein_coding protein_coding MGP_CASTEiJ_T0082823.1 MGP_CASTEiJ_G0031001.1 mouse_genomes_project 7 21349660 21355232 + MGP_CASTEiJ_P0082823 Hnrnpl protein_coding protein_coding MGP_CASTEiJ_T0082824.1 MGP_CASTEiJ_G0031001.1 mouse_genomes_project 7 21351014 21362138 + MGP_CASTEiJ_P0082824 Hnrnpl protein_coding protein_coding MGP_CASTEiJ_T0082825.1 MGP_CASTEiJ_G0031001.1 mouse_genomes_project 7 21351061 21362112 + MGP_CASTEiJ_P0082825 Hnrnpl protein_coding protein_coding MGP_CASTEiJ_T0082826.1 MGP_CASTEiJ_G0031001.1 mouse_genomes_project 7 21351064 21357041 + Hnrnpl protein_coding retained_intron MGP_CASTEiJ_T0082827.1 MGP_CASTEiJ_G0031001.1 mouse_genomes_project 7 21353457 21362121 + MGP_CASTEiJ_P0082827 Hnrnpl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082828.1 MGP_CASTEiJ_G0031001.1 mouse_genomes_project 7 21353490 21354560 + Hnrnpl protein_coding retained_intron MGP_CASTEiJ_T0082829.1 MGP_CASTEiJ_G0031001.1 mouse_genomes_project 7 21354937 21358803 + Hnrnpl protein_coding retained_intron MGP_CASTEiJ_T0082830.1 MGP_CASTEiJ_G0031001.1 mouse_genomes_project 7 21355212 21360601 + Hnrnpl protein_coding retained_intron MGP_CASTEiJ_T0082831.1 MGP_CASTEiJ_G0031001.1 mouse_genomes_project 7 21357937 21358815 + Hnrnpl protein_coding retained_intron MGP_CASTEiJ_T0082832.1 MGP_CASTEiJ_G0031001.1 mouse_genomes_project 7 21361088 21362116 + Hnrnpl protein_coding retained_intron MGP_CASTEiJ_T0005098.1 MGP_CASTEiJ_G0004344.1 mouse_genomes_project 7 73347045 73362071 - Gm21057 antisense antisense MGP_CASTEiJ_T0005099.1 MGP_CASTEiJ_G0004344.1 mouse_genomes_project 7 73360598 73362091 - Gm21057 antisense antisense MGP_CASTEiJ_T0081685.1 MGP_CASTEiJ_G0030666.1 mouse_genomes_project 7 3269604 3289382 - MGP_CASTEiJ_P0081685 Zfp583 protein_coding protein_coding MGP_CASTEiJ_T0081686.1 MGP_CASTEiJ_G0030666.1 mouse_genomes_project 7 3270309 3288531 - MGP_CASTEiJ_P0081686 Zfp583 protein_coding protein_coding MGP_CASTEiJ_T0081687.1 MGP_CASTEiJ_G0030666.1 mouse_genomes_project 7 3270338 3287366 - MGP_CASTEiJ_P0081687 Zfp583 protein_coding protein_coding MGP_CASTEiJ_T0081688.1 MGP_CASTEiJ_G0030666.1 mouse_genomes_project 7 3271662 3289347 - Zfp583 protein_coding processed_transcript MGP_CASTEiJ_T0081689.1 MGP_CASTEiJ_G0030666.1 mouse_genomes_project 7 3280055 3289301 - Zfp583 protein_coding processed_transcript MGP_CASTEiJ_T0081690.1 MGP_CASTEiJ_G0030666.1 mouse_genomes_project 7 3280509 3289375 - MGP_CASTEiJ_P0081690 Zfp583 protein_coding protein_coding MGP_CASTEiJ_T0082906.1 MGP_CASTEiJ_G0031020.1 mouse_genomes_project 7 21859960 21876578 + MGP_CASTEiJ_P0082906 Dpf1 protein_coding protein_coding MGP_CASTEiJ_T0082907.1 MGP_CASTEiJ_G0031020.1 mouse_genomes_project 7 21859985 21876891 + MGP_CASTEiJ_P0082907 Dpf1 protein_coding protein_coding MGP_CASTEiJ_T0082908.1 MGP_CASTEiJ_G0031020.1 mouse_genomes_project 7 21863962 21876212 + MGP_CASTEiJ_P0082908 Dpf1 protein_coding protein_coding MGP_CASTEiJ_T0082909.1 MGP_CASTEiJ_G0031020.1 mouse_genomes_project 7 21864050 21876204 + Dpf1 protein_coding retained_intron MGP_CASTEiJ_T0082910.1 MGP_CASTEiJ_G0031020.1 mouse_genomes_project 7 21864050 21876217 + MGP_CASTEiJ_P0082910 Dpf1 protein_coding protein_coding MGP_CASTEiJ_T0082911.1 MGP_CASTEiJ_G0031020.1 mouse_genomes_project 7 21864056 21876887 + Dpf1 protein_coding processed_transcript MGP_CASTEiJ_T0082912.1 MGP_CASTEiJ_G0031020.1 mouse_genomes_project 7 21865551 21872537 + MGP_CASTEiJ_P0082912 Dpf1 protein_coding protein_coding MGP_CASTEiJ_T0082913.1 MGP_CASTEiJ_G0031020.1 mouse_genomes_project 7 21865644 21870468 + Dpf1 protein_coding processed_transcript MGP_CASTEiJ_T0082914.1 MGP_CASTEiJ_G0031020.1 mouse_genomes_project 7 21872258 21875059 + MGP_CASTEiJ_P0082914 Dpf1 protein_coding protein_coding MGP_CASTEiJ_T0082915.1 MGP_CASTEiJ_G0031020.1 mouse_genomes_project 7 21873464 21875879 + Dpf1 protein_coding retained_intron MGP_CASTEiJ_T0084332.1 MGP_CASTEiJ_G0031360.1 mouse_genomes_project 7 54960500 54965141 + MGP_CASTEiJ_P0084332 Magel2 protein_coding protein_coding MGP_CASTEiJ_T0085953.1 MGP_CASTEiJ_G0031874.1 mouse_genomes_project 7 104735027 104759786 - MGP_CASTEiJ_P0085953 Nrip3 protein_coding protein_coding MGP_CASTEiJ_T0085954.1 MGP_CASTEiJ_G0031874.1 mouse_genomes_project 7 104735031 104759306 - MGP_CASTEiJ_P0085954 Nrip3 protein_coding protein_coding MGP_CASTEiJ_T0005064.1 MGP_CASTEiJ_G0004321.1 mouse_genomes_project 7 29177203 29179757 + 4930505M18Rik antisense antisense MGP_CASTEiJ_T0086308.1 MGP_CASTEiJ_G0031947.1 mouse_genomes_project 7 115399075 115422020 + MGP_CASTEiJ_P0086308 Lyrm1 protein_coding protein_coding MGP_CASTEiJ_T0086309.1 MGP_CASTEiJ_G0031947.1 mouse_genomes_project 7 115399081 115421551 + MGP_CASTEiJ_P0086309 Lyrm1 protein_coding protein_coding MGP_CASTEiJ_T0086310.1 MGP_CASTEiJ_G0031947.1 mouse_genomes_project 7 115399507 115422016 + MGP_CASTEiJ_P0086310 Lyrm1 protein_coding protein_coding MGP_CASTEiJ_T0086311.1 MGP_CASTEiJ_G0031947.1 mouse_genomes_project 7 115403304 115422022 + MGP_CASTEiJ_P0086311 Lyrm1 protein_coding protein_coding MGP_CASTEiJ_T0101226.1 MGP_CASTEiJ_G0038139.1 mouse_genomes_project 7 26220857 26220987 - Gm25922 snoRNA snoRNA MGP_CASTEiJ_T0008659.1 MGP_CASTEiJ_G0007007.1 mouse_genomes_project 7 58667612 58668185 - Gm45081 lincRNA lincRNA MGP_CASTEiJ_T0084370.1 MGP_CASTEiJ_G0031368.1 mouse_genomes_project 7 56856850 56872304 + Mtmr10 protein_coding retained_intron MGP_CASTEiJ_T0084371.1 MGP_CASTEiJ_G0031368.1 mouse_genomes_project 7 56856867 56911373 + MGP_CASTEiJ_P0084371 Mtmr10 protein_coding protein_coding MGP_CASTEiJ_T0084372.1 MGP_CASTEiJ_G0031368.1 mouse_genomes_project 7 56856979 56908585 + MGP_CASTEiJ_P0084372 Mtmr10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084373.1 MGP_CASTEiJ_G0031368.1 mouse_genomes_project 7 56869719 56891677 + MGP_CASTEiJ_P0084373 Mtmr10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0002250.1 MGP_CASTEiJ_G0002169.1 mouse_genomes_project 7 140448895 140450296 + TEC TEC MGP_CASTEiJ_T0081497.1 MGP_CASTEiJ_G0030612.1 mouse_genomes_project 7 1347142 1356393 + MGP_CASTEiJ_P0081497 Eps8l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081498.1 MGP_CASTEiJ_G0030612.1 mouse_genomes_project 7 1347142 1355650 + MGP_CASTEiJ_P0081498 Eps8l1 protein_coding protein_coding MGP_CASTEiJ_T0081499.1 MGP_CASTEiJ_G0030612.1 mouse_genomes_project 7 1347151 1367621 + MGP_CASTEiJ_P0081499 Eps8l1 protein_coding protein_coding MGP_CASTEiJ_T0081500.1 MGP_CASTEiJ_G0030612.1 mouse_genomes_project 7 1350909 1357257 + MGP_CASTEiJ_P0081500 Eps8l1 protein_coding protein_coding MGP_CASTEiJ_T0081501.1 MGP_CASTEiJ_G0030612.1 mouse_genomes_project 7 1351151 1355792 + Eps8l1 protein_coding retained_intron MGP_CASTEiJ_T0081502.1 MGP_CASTEiJ_G0030612.1 mouse_genomes_project 7 1351158 1356602 + Eps8l1 protein_coding retained_intron MGP_CASTEiJ_T0081503.1 MGP_CASTEiJ_G0030612.1 mouse_genomes_project 7 1351158 1367459 + MGP_CASTEiJ_P0081503 Eps8l1 protein_coding protein_coding MGP_CASTEiJ_T0081504.1 MGP_CASTEiJ_G0030612.1 mouse_genomes_project 7 1351185 1356465 + MGP_CASTEiJ_P0081504 Eps8l1 protein_coding protein_coding MGP_CASTEiJ_T0081505.1 MGP_CASTEiJ_G0030612.1 mouse_genomes_project 7 1351265 1368692 + MGP_CASTEiJ_P0081505 Eps8l1 protein_coding protein_coding MGP_CASTEiJ_T0081506.1 MGP_CASTEiJ_G0030612.1 mouse_genomes_project 7 1351277 1367457 + MGP_CASTEiJ_P0081506 Eps8l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081507.1 MGP_CASTEiJ_G0030612.1 mouse_genomes_project 7 1351285 1356342 + MGP_CASTEiJ_P0081507 Eps8l1 protein_coding protein_coding MGP_CASTEiJ_T0081508.1 MGP_CASTEiJ_G0030612.1 mouse_genomes_project 7 1365650 1366191 + Eps8l1 protein_coding processed_transcript MGP_CASTEiJ_T0081509.1 MGP_CASTEiJ_G0030612.1 mouse_genomes_project 7 1365881 1367461 + MGP_CASTEiJ_P0081509 Eps8l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0008618.1 MGP_CASTEiJ_G0006978.1 mouse_genomes_project 7 28793183 28799253 - lincRNA lincRNA MGP_CASTEiJ_T0084374.1 MGP_CASTEiJ_G0031369.1 mouse_genomes_project 7 56918518 56947219 - MGP_CASTEiJ_P0084374 Fan1 protein_coding protein_coding MGP_CASTEiJ_T0084375.1 MGP_CASTEiJ_G0031369.1 mouse_genomes_project 7 56934685 56946517 - Fan1 protein_coding retained_intron MGP_CASTEiJ_T0084376.1 MGP_CASTEiJ_G0031369.1 mouse_genomes_project 7 56943350 56947234 - Fan1 protein_coding retained_intron MGP_CASTEiJ_T0084377.1 MGP_CASTEiJ_G0031369.1 mouse_genomes_project 7 56944108 56947180 - Fan1 protein_coding retained_intron MGP_CASTEiJ_T0082703.1 MGP_CASTEiJ_G0030968.1 mouse_genomes_project 7 20411334 20427669 - MGP_CASTEiJ_P0082703 Zfp780b protein_coding protein_coding MGP_CASTEiJ_T0085910.1 MGP_CASTEiJ_G0031861.1 mouse_genomes_project 7 103853349 103861565 - MGP_CASTEiJ_P0085910 Nlrp10 protein_coding protein_coding MGP_CASTEiJ_T0005057.1 MGP_CASTEiJ_G0004315.1 mouse_genomes_project 7 25613082 25619148 + Gm12764 antisense antisense MGP_CASTEiJ_T0015280.1 MGP_CASTEiJ_G0013443.1 mouse_genomes_project 7 95200100 95200453 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084986.1 MGP_CASTEiJ_G0031492.1 mouse_genomes_project 7 78495836 78497629 + MGP_CASTEiJ_P0084986 Olfr290 protein_coding protein_coding MGP_CASTEiJ_T0083642.1 MGP_CASTEiJ_G0031185.1 mouse_genomes_project 7 36203529 36205587 + MGP_CASTEiJ_P0083642 protein_coding protein_coding MGP_CASTEiJ_T0005139.1 MGP_CASTEiJ_G0004371.1 mouse_genomes_project 7 116417404 116421224 - antisense antisense MGP_CASTEiJ_T0085725.1 MGP_CASTEiJ_G0031771.1 mouse_genomes_project 7 100428436 100429498 - MGP_CASTEiJ_P0085725 Olfr690 protein_coding protein_coding MGP_CASTEiJ_T0083414.1 MGP_CASTEiJ_G0031126.1 mouse_genomes_project 7 26722553 26727215 - MGP_CASTEiJ_P0083414 Faap24 protein_coding protein_coding MGP_CASTEiJ_T0083415.1 MGP_CASTEiJ_G0031126.1 mouse_genomes_project 7 26722706 26727092 - Faap24 protein_coding retained_intron MGP_CASTEiJ_T0083416.1 MGP_CASTEiJ_G0031126.1 mouse_genomes_project 7 26723097 26727087 - MGP_CASTEiJ_P0083416 Faap24 protein_coding protein_coding MGP_CASTEiJ_T0083297.1 MGP_CASTEiJ_G0031100.1 mouse_genomes_project 7 23838386 23860458 - Gramd1a protein_coding retained_intron MGP_CASTEiJ_T0083298.1 MGP_CASTEiJ_G0031100.1 mouse_genomes_project 7 23838386 23860528 - MGP_CASTEiJ_P0083298 Gramd1a protein_coding protein_coding MGP_CASTEiJ_T0083299.1 MGP_CASTEiJ_G0031100.1 mouse_genomes_project 7 23838386 23860460 - MGP_CASTEiJ_P0083299 Gramd1a protein_coding protein_coding MGP_CASTEiJ_T0083300.1 MGP_CASTEiJ_G0031100.1 mouse_genomes_project 7 23838386 23860458 - MGP_CASTEiJ_P0083300 Gramd1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083301.1 MGP_CASTEiJ_G0031100.1 mouse_genomes_project 7 23838386 23860479 - MGP_CASTEiJ_P0083301 Gramd1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083302.1 MGP_CASTEiJ_G0031100.1 mouse_genomes_project 7 23840617 23841623 - Gramd1a protein_coding retained_intron MGP_CASTEiJ_T0083303.1 MGP_CASTEiJ_G0031100.1 mouse_genomes_project 7 23840849 23846409 - MGP_CASTEiJ_P0083303 Gramd1a protein_coding protein_coding MGP_CASTEiJ_T0083304.1 MGP_CASTEiJ_G0031100.1 mouse_genomes_project 7 23841097 23851993 - MGP_CASTEiJ_P0083304 Gramd1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083305.1 MGP_CASTEiJ_G0031100.1 mouse_genomes_project 7 23843849 23848149 - MGP_CASTEiJ_P0083305 Gramd1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083306.1 MGP_CASTEiJ_G0031100.1 mouse_genomes_project 7 23848098 23860458 - MGP_CASTEiJ_P0083306 Gramd1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083307.1 MGP_CASTEiJ_G0031100.1 mouse_genomes_project 7 23849306 23860399 - Gramd1a protein_coding retained_intron MGP_CASTEiJ_T0083308.1 MGP_CASTEiJ_G0031100.1 mouse_genomes_project 7 23849414 23861516 - MGP_CASTEiJ_P0083308 Gramd1a protein_coding protein_coding MGP_CASTEiJ_T0083309.1 MGP_CASTEiJ_G0031100.1 mouse_genomes_project 7 23850837 23865341 - MGP_CASTEiJ_P0083309 Gramd1a protein_coding protein_coding MGP_CASTEiJ_T0015164.1 MGP_CASTEiJ_G0013327.1 mouse_genomes_project 7 18116430 18116717 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083514.1 MGP_CASTEiJ_G0031142.1 mouse_genomes_project 7 29830571 29840026 - MGP_CASTEiJ_P0083514 Pop4 protein_coding protein_coding MGP_CASTEiJ_T0083515.1 MGP_CASTEiJ_G0031142.1 mouse_genomes_project 7 29832922 29839930 - MGP_CASTEiJ_P0083515 Pop4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083516.1 MGP_CASTEiJ_G0031142.1 mouse_genomes_project 7 29832992 29839972 - MGP_CASTEiJ_P0083516 Pop4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083517.1 MGP_CASTEiJ_G0031142.1 mouse_genomes_project 7 29834473 29839952 - Pop4 protein_coding retained_intron MGP_CASTEiJ_T0083518.1 MGP_CASTEiJ_G0031142.1 mouse_genomes_project 7 29834678 29839976 - MGP_CASTEiJ_P0083518 Pop4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083519.1 MGP_CASTEiJ_G0031142.1 mouse_genomes_project 7 29836971 29839878 - Pop4 protein_coding retained_intron MGP_CASTEiJ_T0005103.1 MGP_CASTEiJ_G0004348.1 mouse_genomes_project 7 74099273 74106020 + Gm44649 antisense antisense MGP_CASTEiJ_T0005104.1 MGP_CASTEiJ_G0004348.1 mouse_genomes_project 7 74099296 74100619 + Gm44649 antisense antisense MGP_CASTEiJ_T0015220.1 MGP_CASTEiJ_G0013383.1 mouse_genomes_project 7 48329253 48329798 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102449.1 MGP_CASTEiJ_G0039174.1 mouse_genomes_project 7 5620271 5655135 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0098643.1 MGP_CASTEiJ_G0035574.1 mouse_genomes_project 7 22231187 22231303 - n-R5s153 rRNA rRNA MGP_CASTEiJ_T0087540.1 MGP_CASTEiJ_G0032211.1 mouse_genomes_project 7 137549387 137550323 + MGP_CASTEiJ_P0087540 Olfr61 protein_coding protein_coding MGP_CASTEiJ_T0083611.1 MGP_CASTEiJ_G0031170.1 mouse_genomes_project 7 35819066 35833804 + MGP_CASTEiJ_P0083611 Ceacam18 protein_coding protein_coding MGP_CASTEiJ_T0087084.1 MGP_CASTEiJ_G0032099.1 mouse_genomes_project 7 124012699 124040361 + MGP_CASTEiJ_P0087084 Itgax protein_coding unknown_likely_coding MGP_CASTEiJ_T0087085.1 MGP_CASTEiJ_G0032099.1 mouse_genomes_project 7 124012704 124040354 + MGP_CASTEiJ_P0087085 Itgax protein_coding protein_coding MGP_CASTEiJ_T0087086.1 MGP_CASTEiJ_G0032099.1 mouse_genomes_project 7 124012708 124017199 + MGP_CASTEiJ_P0087086 Itgax protein_coding protein_coding MGP_CASTEiJ_T0087087.1 MGP_CASTEiJ_G0032099.1 mouse_genomes_project 7 124017903 124018610 + Itgax protein_coding retained_intron MGP_CASTEiJ_T0087088.1 MGP_CASTEiJ_G0032099.1 mouse_genomes_project 7 124037152 124037871 + Itgax protein_coding retained_intron MGP_CASTEiJ_T0085955.1 MGP_CASTEiJ_G0031875.1 mouse_genomes_project 7 104767483 104853762 - MGP_CASTEiJ_P0085955 Scube2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085956.1 MGP_CASTEiJ_G0031875.1 mouse_genomes_project 7 104781030 104853703 - MGP_CASTEiJ_P0085956 Scube2 protein_coding protein_coding MGP_CASTEiJ_T0085957.1 MGP_CASTEiJ_G0031875.1 mouse_genomes_project 7 104781044 104853796 - MGP_CASTEiJ_P0085957 Scube2 protein_coding protein_coding MGP_CASTEiJ_T0085958.1 MGP_CASTEiJ_G0031875.1 mouse_genomes_project 7 104781187 104853760 - MGP_CASTEiJ_P0085958 Scube2 protein_coding protein_coding MGP_CASTEiJ_T0085959.1 MGP_CASTEiJ_G0031875.1 mouse_genomes_project 7 104781443 104826266 - Scube2 protein_coding processed_transcript MGP_CASTEiJ_T0085960.1 MGP_CASTEiJ_G0031875.1 mouse_genomes_project 7 104782998 104790513 - Scube2 protein_coding processed_transcript MGP_CASTEiJ_T0084437.1 MGP_CASTEiJ_G0031381.1 mouse_genomes_project 7 58668360 58678033 + MGP_CASTEiJ_P0084437 Vimp protein_coding protein_coding MGP_CASTEiJ_T0084438.1 MGP_CASTEiJ_G0031381.1 mouse_genomes_project 7 58668388 58676079 + Vimp protein_coding retained_intron MGP_CASTEiJ_T0084439.1 MGP_CASTEiJ_G0031381.1 mouse_genomes_project 7 58668389 58678031 + MGP_CASTEiJ_P0084439 Vimp protein_coding protein_coding MGP_CASTEiJ_T0084440.1 MGP_CASTEiJ_G0031381.1 mouse_genomes_project 7 58668398 58677750 + MGP_CASTEiJ_P0084440 Vimp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084441.1 MGP_CASTEiJ_G0031381.1 mouse_genomes_project 7 58668672 58677817 + MGP_CASTEiJ_P0084441 Vimp protein_coding protein_coding MGP_CASTEiJ_T0102577.1 MGP_CASTEiJ_G0039301.1 mouse_genomes_project 7 80938077 80938953 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010617.1 MGP_CASTEiJ_G0008805.1 mouse_genomes_project 7 124395454 124395579 - Gm24365 miRNA miRNA MGP_CASTEiJ_T0017589.1 MGP_CASTEiJ_G0014976.1 mouse_genomes_project 7 20103733 20107147 - Gm44684 processed_transcript processed_transcript MGP_CASTEiJ_T0085631.1 MGP_CASTEiJ_G0031697.1 mouse_genomes_project 7 98413880 98416442 - MGP_CASTEiJ_P0085631 Olfr620 protein_coding protein_coding MGP_CASTEiJ_T0085651.1 MGP_CASTEiJ_G0031717.1 mouse_genomes_project 7 98804193 98805132 + MGP_CASTEiJ_P0085651 Olfr633 protein_coding protein_coding MGP_CASTEiJ_T0086368.1 MGP_CASTEiJ_G0031964.1 mouse_genomes_project 7 116591904 116593718 - MGP_CASTEiJ_P0086368 protein_coding protein_coding MGP_CASTEiJ_T0098646.1 MGP_CASTEiJ_G0035577.1 mouse_genomes_project 7 63633751 63633836 + Gm24880 rRNA rRNA MGP_CASTEiJ_T0084774.1 MGP_CASTEiJ_G0031444.1 mouse_genomes_project 7 73660804 73663033 + MGP_CASTEiJ_P0084774 Hddc3 protein_coding protein_coding MGP_CASTEiJ_T0084775.1 MGP_CASTEiJ_G0031444.1 mouse_genomes_project 7 73660816 73661680 + MGP_CASTEiJ_P0084775 Hddc3 protein_coding protein_coding MGP_CASTEiJ_T0084776.1 MGP_CASTEiJ_G0031444.1 mouse_genomes_project 7 73661266 73662082 + MGP_CASTEiJ_P0084776 Hddc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084777.1 MGP_CASTEiJ_G0031444.1 mouse_genomes_project 7 73661479 73668673 + MGP_CASTEiJ_P0084777 Hddc3 protein_coding protein_coding MGP_CASTEiJ_T0102556.1 MGP_CASTEiJ_G0039280.1 mouse_genomes_project 7 78932256 78933177 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0083748.1 MGP_CASTEiJ_G0031206.1 mouse_genomes_project 7 37026863 37040742 + MGP_CASTEiJ_P0083748 Kcnc3 protein_coding protein_coding MGP_CASTEiJ_T0083749.1 MGP_CASTEiJ_G0031206.1 mouse_genomes_project 7 37026863 37040748 + MGP_CASTEiJ_P0083749 Kcnc3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083750.1 MGP_CASTEiJ_G0031206.1 mouse_genomes_project 7 37026863 37040742 + MGP_CASTEiJ_P0083750 Kcnc3 protein_coding protein_coding MGP_CASTEiJ_T0083751.1 MGP_CASTEiJ_G0031206.1 mouse_genomes_project 7 37027072 37040117 + MGP_CASTEiJ_P0083751 Kcnc3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085882.1 MGP_CASTEiJ_G0031834.1 mouse_genomes_project 7 102973471 102974582 + MGP_CASTEiJ_P0085882 Olfr479 protein_coding protein_coding MGP_CASTEiJ_T0005157.1 MGP_CASTEiJ_G0004385.1 mouse_genomes_project 7 123881985 123885266 - Gm15533 antisense antisense MGP_CASTEiJ_T0005158.1 MGP_CASTEiJ_G0004385.1 mouse_genomes_project 7 123882952 123885296 - Gm15533 antisense antisense MGP_CASTEiJ_T0015315.1 MGP_CASTEiJ_G0013478.1 mouse_genomes_project 7 122957833 122958778 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084996.1 MGP_CASTEiJ_G0031501.1 mouse_genomes_project 7 80431057 80432017 - MGP_CASTEiJ_P0084996 Olfr305 protein_coding protein_coding MGP_CASTEiJ_T0082593.1 MGP_CASTEiJ_G0030942.1 mouse_genomes_project 7 19546316 19549429 - Snrpa protein_coding retained_intron MGP_CASTEiJ_T0082594.1 MGP_CASTEiJ_G0030942.1 mouse_genomes_project 7 19546318 19556206 - MGP_CASTEiJ_P0082594 Snrpa protein_coding protein_coding MGP_CASTEiJ_T0082595.1 MGP_CASTEiJ_G0030942.1 mouse_genomes_project 7 19546318 19556691 - MGP_CASTEiJ_P0082595 Snrpa protein_coding protein_coding MGP_CASTEiJ_T0082596.1 MGP_CASTEiJ_G0030942.1 mouse_genomes_project 7 19546318 19556717 - MGP_CASTEiJ_P0082596 Snrpa protein_coding protein_coding MGP_CASTEiJ_T0082597.1 MGP_CASTEiJ_G0030942.1 mouse_genomes_project 7 19546638 19556206 - MGP_CASTEiJ_P0082597 Snrpa protein_coding protein_coding MGP_CASTEiJ_T0082598.1 MGP_CASTEiJ_G0030942.1 mouse_genomes_project 7 19552164 19556470 - MGP_CASTEiJ_P0082598 Snrpa protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082599.1 MGP_CASTEiJ_G0030942.1 mouse_genomes_project 7 19554909 19556599 - Snrpa protein_coding retained_intron MGP_CASTEiJ_T0085806.1 MGP_CASTEiJ_G0031787.1 mouse_genomes_project 7 100856599 100866966 + MGP_CASTEiJ_P0085806 Ilk protein_coding protein_coding MGP_CASTEiJ_T0085807.1 MGP_CASTEiJ_G0031787.1 mouse_genomes_project 7 100856678 100866959 + Ilk protein_coding retained_intron MGP_CASTEiJ_T0085808.1 MGP_CASTEiJ_G0031787.1 mouse_genomes_project 7 100856732 100866966 + MGP_CASTEiJ_P0085808 Ilk protein_coding protein_coding MGP_CASTEiJ_T0085809.1 MGP_CASTEiJ_G0031787.1 mouse_genomes_project 7 100856740 100865084 + MGP_CASTEiJ_P0085809 Ilk protein_coding protein_coding MGP_CASTEiJ_T0085810.1 MGP_CASTEiJ_G0031787.1 mouse_genomes_project 7 100857108 100865402 + Ilk protein_coding retained_intron MGP_CASTEiJ_T0085811.1 MGP_CASTEiJ_G0031787.1 mouse_genomes_project 7 100857130 100865516 + Ilk protein_coding retained_intron MGP_CASTEiJ_T0085813.1 MGP_CASTEiJ_G0031787.1 mouse_genomes_project 7 100864227 100865805 + Ilk protein_coding retained_intron MGP_CASTEiJ_T0085814.1 MGP_CASTEiJ_G0031787.1 mouse_genomes_project 7 100864550 100865215 + Ilk protein_coding retained_intron MGP_CASTEiJ_T0085815.1 MGP_CASTEiJ_G0031787.1 mouse_genomes_project 7 100864550 100865949 + MGP_CASTEiJ_P0085815 Ilk protein_coding protein_coding MGP_CASTEiJ_T0085816.1 MGP_CASTEiJ_G0031787.1 mouse_genomes_project 7 100865012 100865951 + Ilk protein_coding retained_intron MGP_CASTEiJ_T0085817.1 MGP_CASTEiJ_G0031787.1 mouse_genomes_project 7 100865222 100866137 + Ilk protein_coding retained_intron MGP_CASTEiJ_T0085818.1 MGP_CASTEiJ_G0031787.1 mouse_genomes_project 7 100865623 100866817 + Ilk protein_coding retained_intron MGP_CASTEiJ_T0085819.1 MGP_CASTEiJ_G0031787.1 mouse_genomes_project 7 100865821 100866698 + Ilk protein_coding processed_transcript MGP_CASTEiJ_T0082887.1 MGP_CASTEiJ_G0031012.1 mouse_genomes_project 7 21731087 21740919 - MGP_CASTEiJ_P0082887 Spred3 protein_coding protein_coding MGP_CASTEiJ_T0082888.1 MGP_CASTEiJ_G0031012.1 mouse_genomes_project 7 21738220 21742116 - Spred3 protein_coding retained_intron MGP_CASTEiJ_T0084155.1 MGP_CASTEiJ_G0031312.1 mouse_genomes_project 7 39750449 39754574 + MGP_CASTEiJ_P0084155 Tmem86a protein_coding protein_coding MGP_CASTEiJ_T0084298.1 MGP_CASTEiJ_G0031352.1 mouse_genomes_project 7 50193035 50300117 - MGP_CASTEiJ_P0084298 Gabra5 protein_coding protein_coding MGP_CASTEiJ_T0084299.1 MGP_CASTEiJ_G0031352.1 mouse_genomes_project 7 50193082 50299479 - MGP_CASTEiJ_P0084299 Gabra5 protein_coding protein_coding MGP_CASTEiJ_T0084300.1 MGP_CASTEiJ_G0031352.1 mouse_genomes_project 7 50193268 50300167 - MGP_CASTEiJ_P0084300 Gabra5 protein_coding protein_coding MGP_CASTEiJ_T0008696.1 MGP_CASTEiJ_G0007036.1 mouse_genomes_project 7 67884668 67892317 + Gm30459 lincRNA lincRNA MGP_CASTEiJ_T0086276.1 MGP_CASTEiJ_G0031940.1 mouse_genomes_project 7 115090604 115120097 + MGP_CASTEiJ_P0086276 Acsm1 protein_coding protein_coding MGP_CASTEiJ_T0086277.1 MGP_CASTEiJ_G0031940.1 mouse_genomes_project 7 115101344 115148634 + MGP_CASTEiJ_P0086277 Acsm1 protein_coding protein_coding MGP_CASTEiJ_T0086278.1 MGP_CASTEiJ_G0031940.1 mouse_genomes_project 7 115101376 115148354 + MGP_CASTEiJ_P0086278 Acsm1 protein_coding protein_coding MGP_CASTEiJ_T0086053.1 MGP_CASTEiJ_G0031895.1 mouse_genomes_project 7 107498228 107549863 + MGP_CASTEiJ_P0086053 Micalcl protein_coding protein_coding MGP_CASTEiJ_T0086054.1 MGP_CASTEiJ_G0031895.1 mouse_genomes_project 7 107510333 107531399 + MGP_CASTEiJ_P0086054 Micalcl protein_coding protein_coding MGP_CASTEiJ_T0086055.1 MGP_CASTEiJ_G0031895.1 mouse_genomes_project 7 107510856 107549976 + MGP_CASTEiJ_P0086055 Micalcl protein_coding protein_coding MGP_CASTEiJ_T0086056.1 MGP_CASTEiJ_G0031895.1 mouse_genomes_project 7 107517147 107549976 + MGP_CASTEiJ_P0086056 Micalcl protein_coding protein_coding MGP_CASTEiJ_T0086057.1 MGP_CASTEiJ_G0031895.1 mouse_genomes_project 7 107543918 107549929 + Micalcl protein_coding retained_intron MGP_CASTEiJ_T0015325.1 MGP_CASTEiJ_G0013488.1 mouse_genomes_project 7 124949582 124950267 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0086421.1 MGP_CASTEiJ_G0031978.1 mouse_genomes_project 7 117763588 117782934 + MGP_CASTEiJ_P0086421 Dctn5 protein_coding protein_coding MGP_CASTEiJ_T0086422.1 MGP_CASTEiJ_G0031978.1 mouse_genomes_project 7 117763601 117782934 + Dctn5 protein_coding retained_intron MGP_CASTEiJ_T0086423.1 MGP_CASTEiJ_G0031978.1 mouse_genomes_project 7 117763619 117765682 + MGP_CASTEiJ_P0086423 Dctn5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086424.1 MGP_CASTEiJ_G0031978.1 mouse_genomes_project 7 117777938 117782469 + MGP_CASTEiJ_P0086424 Dctn5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0005129.1 MGP_CASTEiJ_G0004364.1 mouse_genomes_project 7 105680408 105693497 - Gm28863 antisense antisense MGP_CASTEiJ_T0087603.1 MGP_CASTEiJ_G0032233.1 mouse_genomes_project 7 137962532 137963613 - MGP_CASTEiJ_P0087603 Ifitm6 protein_coding protein_coding MGP_CASTEiJ_T0098650.1 MGP_CASTEiJ_G0035581.1 mouse_genomes_project 7 108294009 108294120 + Gm23662 rRNA rRNA MGP_CASTEiJ_T0082845.1 MGP_CASTEiJ_G0031005.1 mouse_genomes_project 7 21432264 21443861 + MGP_CASTEiJ_P0082845 Capn12 protein_coding protein_coding MGP_CASTEiJ_T0085182.1 MGP_CASTEiJ_G0031556.1 mouse_genomes_project 7 92122327 92146622 + MGP_CASTEiJ_P0085182 Clns1a protein_coding protein_coding MGP_CASTEiJ_T0085183.1 MGP_CASTEiJ_G0031556.1 mouse_genomes_project 7 92122388 92140473 + Clns1a protein_coding retained_intron MGP_CASTEiJ_T0085184.1 MGP_CASTEiJ_G0031556.1 mouse_genomes_project 7 92145538 92148541 + Clns1a protein_coding retained_intron MGP_CASTEiJ_T0081936.1 MGP_CASTEiJ_G0030761.1 mouse_genomes_project 7 11135013 11171477 + MGP_CASTEiJ_P0081936 Zc3h4 protein_coding protein_coding MGP_CASTEiJ_T0081937.1 MGP_CASTEiJ_G0030761.1 mouse_genomes_project 7 11135064 11169452 + MGP_CASTEiJ_P0081937 Zc3h4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0102498.1 MGP_CASTEiJ_G0039222.1 mouse_genomes_project 7 19023723 19030968 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0082357.1 MGP_CASTEiJ_G0030885.1 mouse_genomes_project 7 16893463 16899437 - MGP_CASTEiJ_P0082357 Tex101 protein_coding protein_coding MGP_CASTEiJ_T0099012.1 MGP_CASTEiJ_G0035931.1 mouse_genomes_project 7 119892429 119998411 + Gm15338 sense_intronic sense_intronic MGP_CASTEiJ_T0015285.1 MGP_CASTEiJ_G0013448.1 mouse_genomes_project 7 97903123 97903425 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084739.1 MGP_CASTEiJ_G0031439.1 mouse_genomes_project 7 73575759 73581020 + MGP_CASTEiJ_P0084739 Ngrn protein_coding protein_coding MGP_CASTEiJ_T0084740.1 MGP_CASTEiJ_G0031439.1 mouse_genomes_project 7 73575764 73581020 + Ngrn protein_coding retained_intron MGP_CASTEiJ_T0082581.1 MGP_CASTEiJ_G0030939.1 mouse_genomes_project 7 19523895 19538423 - MGP_CASTEiJ_P0082581 Rab4b protein_coding protein_coding MGP_CASTEiJ_T0082582.1 MGP_CASTEiJ_G0030939.1 mouse_genomes_project 7 19523897 19538335 - MGP_CASTEiJ_P0082582 Rab4b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082583.1 MGP_CASTEiJ_G0030939.1 mouse_genomes_project 7 19523898 19538340 - Rab4b protein_coding retained_intron MGP_CASTEiJ_T0082585.1 MGP_CASTEiJ_G0030939.1 mouse_genomes_project 7 19524166 19538415 - Rab4b protein_coding processed_transcript MGP_CASTEiJ_T0082586.1 MGP_CASTEiJ_G0030939.1 mouse_genomes_project 7 19527832 19529948 - Rab4b protein_coding retained_intron MGP_CASTEiJ_T0082587.1 MGP_CASTEiJ_G0030939.1 mouse_genomes_project 7 19528143 19529895 - Rab4b protein_coding processed_transcript MGP_CASTEiJ_T0082588.1 MGP_CASTEiJ_G0030939.1 mouse_genomes_project 7 19531270 19538348 - Rab4b protein_coding processed_transcript MGP_CASTEiJ_T0098729.1 MGP_CASTEiJ_G0035660.1 mouse_genomes_project 7 3689695 3689789 + Gm27675 sRNA sRNA MGP_CASTEiJ_T0008734.1 MGP_CASTEiJ_G0007056.1 mouse_genomes_project 7 86989074 86992968 + Gm26981 lincRNA lincRNA MGP_CASTEiJ_T0017662.1 MGP_CASTEiJ_G0015004.1 mouse_genomes_project 7 119650273 119660062 - Gm26974 processed_transcript lincRNA MGP_CASTEiJ_T0017663.1 MGP_CASTEiJ_G0015004.1 mouse_genomes_project 7 119657720 119659693 - Gm26974 processed_transcript lincRNA MGP_CASTEiJ_T0017664.1 MGP_CASTEiJ_G0015004.1 mouse_genomes_project 7 119657722 119659197 - Gm26974 processed_transcript retained_intron MGP_CASTEiJ_T0085257.1 MGP_CASTEiJ_G0031571.1 mouse_genomes_project 7 93358354 93639177 - MGP_CASTEiJ_P0085257 Uvrag protein_coding protein_coding MGP_CASTEiJ_T0086816.1 MGP_CASTEiJ_G0032044.1 mouse_genomes_project 7 122817430 122821714 - MGP_CASTEiJ_P0086816 Maz protein_coding unknown_likely_coding MGP_CASTEiJ_T0086817.1 MGP_CASTEiJ_G0032044.1 mouse_genomes_project 7 122817439 122821747 - MGP_CASTEiJ_P0086817 Maz protein_coding protein_coding MGP_CASTEiJ_T0086818.1 MGP_CASTEiJ_G0032044.1 mouse_genomes_project 7 122817440 122821609 - MGP_CASTEiJ_P0086818 Maz protein_coding protein_coding MGP_CASTEiJ_T0086819.1 MGP_CASTEiJ_G0032044.1 mouse_genomes_project 7 122818195 122821867 - MGP_CASTEiJ_P0086819 Maz protein_coding protein_coding MGP_CASTEiJ_T0086820.1 MGP_CASTEiJ_G0032044.1 mouse_genomes_project 7 122818355 122820427 - Maz protein_coding retained_intron MGP_CASTEiJ_T0086468.1 MGP_CASTEiJ_G0031987.1 mouse_genomes_project 7 118987026 119077723 - MGP_CASTEiJ_P0086468 Arhgap17 protein_coding protein_coding MGP_CASTEiJ_T0086469.1 MGP_CASTEiJ_G0031987.1 mouse_genomes_project 7 118987080 119077758 - MGP_CASTEiJ_P0086469 Arhgap17 protein_coding protein_coding MGP_CASTEiJ_T0086470.1 MGP_CASTEiJ_G0031987.1 mouse_genomes_project 7 118987080 119077758 - MGP_CASTEiJ_P0086470 Arhgap17 protein_coding protein_coding MGP_CASTEiJ_T0086471.1 MGP_CASTEiJ_G0031987.1 mouse_genomes_project 7 118987084 119077750 - MGP_CASTEiJ_P0086471 Arhgap17 protein_coding protein_coding MGP_CASTEiJ_T0086472.1 MGP_CASTEiJ_G0031987.1 mouse_genomes_project 7 118987089 119077775 - MGP_CASTEiJ_P0086472 Arhgap17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086473.1 MGP_CASTEiJ_G0031987.1 mouse_genomes_project 7 118987188 119077757 - MGP_CASTEiJ_P0086473 Arhgap17 protein_coding protein_coding MGP_CASTEiJ_T0086474.1 MGP_CASTEiJ_G0031987.1 mouse_genomes_project 7 118990767 118994075 - Arhgap17 protein_coding retained_intron MGP_CASTEiJ_T0086475.1 MGP_CASTEiJ_G0031987.1 mouse_genomes_project 7 118994816 119005181 - Arhgap17 protein_coding retained_intron MGP_CASTEiJ_T0086476.1 MGP_CASTEiJ_G0031987.1 mouse_genomes_project 7 119003114 119077787 - Arhgap17 protein_coding retained_intron MGP_CASTEiJ_T0086477.1 MGP_CASTEiJ_G0031987.1 mouse_genomes_project 7 119029956 119077787 - MGP_CASTEiJ_P0086477 Arhgap17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086478.1 MGP_CASTEiJ_G0031987.1 mouse_genomes_project 7 119076638 119077748 - Arhgap17 protein_coding retained_intron MGP_CASTEiJ_T0100006.1 MGP_CASTEiJ_G0036919.1 mouse_genomes_project 7 37755444 37755543 - Gm23585 snRNA snRNA MGP_CASTEiJ_T0086567.1 MGP_CASTEiJ_G0032004.1 mouse_genomes_project 7 122156704 122163097 - Cd19 protein_coding retained_intron MGP_CASTEiJ_T0086568.1 MGP_CASTEiJ_G0032004.1 mouse_genomes_project 7 122156705 122163118 - MGP_CASTEiJ_P0086568 Cd19 protein_coding protein_coding MGP_CASTEiJ_T0086569.1 MGP_CASTEiJ_G0032004.1 mouse_genomes_project 7 122156705 122163101 - MGP_CASTEiJ_P0086569 Cd19 protein_coding protein_coding MGP_CASTEiJ_T0086570.1 MGP_CASTEiJ_G0032004.1 mouse_genomes_project 7 122157615 122158052 - Cd19 protein_coding retained_intron MGP_CASTEiJ_T0086571.1 MGP_CASTEiJ_G0032004.1 mouse_genomes_project 7 122161894 122162783 - Cd19 protein_coding retained_intron MGP_CASTEiJ_T0083844.1 MGP_CASTEiJ_G0031234.1 mouse_genomes_project 7 37571931 37583966 - MGP_CASTEiJ_P0083844 Fcgrt protein_coding protein_coding MGP_CASTEiJ_T0082356.1 MGP_CASTEiJ_G0030884.1 mouse_genomes_project 7 16859712 16865054 + MGP_CASTEiJ_P0082356 Lypd3 protein_coding protein_coding MGP_CASTEiJ_T0084427.1 MGP_CASTEiJ_G0031379.1 mouse_genomes_project 7 58623887 58649544 + MGP_CASTEiJ_P0084427 Gm45213 protein_coding protein_coding MGP_CASTEiJ_T0010542.1 MGP_CASTEiJ_G0008730.1 mouse_genomes_project 7 17372299 17372409 - Mir6537 miRNA miRNA MGP_CASTEiJ_T0083628.1 MGP_CASTEiJ_G0031178.1 mouse_genomes_project 7 36001694 36007597 + MGP_CASTEiJ_P0083628 Klk9 protein_coding protein_coding MGP_CASTEiJ_T0086894.1 MGP_CASTEiJ_G0032065.1 mouse_genomes_project 7 123290074 123297072 - MGP_CASTEiJ_P0086894 Zfp689 protein_coding protein_coding MGP_CASTEiJ_T0086895.1 MGP_CASTEiJ_G0032065.1 mouse_genomes_project 7 123291668 123296907 - MGP_CASTEiJ_P0086895 Zfp689 protein_coding protein_coding MGP_CASTEiJ_T0010557.1 MGP_CASTEiJ_G0008745.1 mouse_genomes_project 7 36894498 36894563 + Mir7052 miRNA miRNA MGP_CASTEiJ_T0081848.1 MGP_CASTEiJ_G0030732.1 mouse_genomes_project 7 8569778 8596485 + MGP_CASTEiJ_P0081848 Bsph1 protein_coding protein_coding MGP_CASTEiJ_T0081849.1 MGP_CASTEiJ_G0030732.1 mouse_genomes_project 7 8569793 8596415 + MGP_CASTEiJ_P0081849 Bsph1 protein_coding protein_coding MGP_CASTEiJ_T0085573.1 MGP_CASTEiJ_G0031642.1 mouse_genomes_project 7 97351353 97352391 + MGP_CASTEiJ_P0085573 Olfr550 protein_coding protein_coding MGP_CASTEiJ_T0085914.1 MGP_CASTEiJ_G0031863.1 mouse_genomes_project 7 103947822 103988293 + MGP_CASTEiJ_P0085914 Tub protein_coding unknown_likely_coding MGP_CASTEiJ_T0085915.1 MGP_CASTEiJ_G0031863.1 mouse_genomes_project 7 103947852 103974422 + MGP_CASTEiJ_P0085915 Tub protein_coding protein_coding MGP_CASTEiJ_T0085916.1 MGP_CASTEiJ_G0031863.1 mouse_genomes_project 7 103966150 103968280 + Tub protein_coding retained_intron MGP_CASTEiJ_T0087687.1 MGP_CASTEiJ_G0032252.1 mouse_genomes_project 7 138322409 138346063 + MGP_CASTEiJ_P0087687 Eps8l2 protein_coding protein_coding MGP_CASTEiJ_T0087688.1 MGP_CASTEiJ_G0032252.1 mouse_genomes_project 7 138322485 138346063 + Eps8l2 protein_coding retained_intron MGP_CASTEiJ_T0087689.1 MGP_CASTEiJ_G0032252.1 mouse_genomes_project 7 138322516 138339118 + Eps8l2 protein_coding processed_transcript MGP_CASTEiJ_T0087690.1 MGP_CASTEiJ_G0032252.1 mouse_genomes_project 7 138322533 138339116 + Eps8l2 protein_coding retained_intron MGP_CASTEiJ_T0087691.1 MGP_CASTEiJ_G0032252.1 mouse_genomes_project 7 138322535 138326515 + MGP_CASTEiJ_P0087691 Eps8l2 protein_coding protein_coding MGP_CASTEiJ_T0087692.1 MGP_CASTEiJ_G0032252.1 mouse_genomes_project 7 138326180 138339253 + Eps8l2 protein_coding retained_intron MGP_CASTEiJ_T0087693.1 MGP_CASTEiJ_G0032252.1 mouse_genomes_project 7 138341065 138344452 + Eps8l2 protein_coding retained_intron MGP_CASTEiJ_T0087694.1 MGP_CASTEiJ_G0032252.1 mouse_genomes_project 7 138341272 138344771 + Eps8l2 protein_coding processed_transcript MGP_CASTEiJ_T0087695.1 MGP_CASTEiJ_G0032252.1 mouse_genomes_project 7 138343281 138344769 + Eps8l2 protein_coding processed_transcript MGP_CASTEiJ_T0087696.1 MGP_CASTEiJ_G0032252.1 mouse_genomes_project 7 138344573 138345710 + Eps8l2 protein_coding processed_transcript MGP_CASTEiJ_T0081639.1 MGP_CASTEiJ_G0030645.1 mouse_genomes_project 7 1986880 1988001 + MGP_CASTEiJ_P0081639 protein_coding protein_coding MGP_CASTEiJ_T0101260.1 MGP_CASTEiJ_G0038173.1 mouse_genomes_project 7 94000138 94000286 - Snord15a snoRNA snoRNA MGP_CASTEiJ_T0005178.1 MGP_CASTEiJ_G0004400.1 mouse_genomes_project 7 140427209 140435099 - antisense antisense MGP_CASTEiJ_T0085844.1 MGP_CASTEiJ_G0031803.1 mouse_genomes_project 7 101768855 101769815 + MGP_CASTEiJ_P0085844 Olfr703 protein_coding protein_coding MGP_CASTEiJ_T0015334.1 MGP_CASTEiJ_G0013497.1 mouse_genomes_project 7 137707308 137707784 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008779.1 MGP_CASTEiJ_G0007086.1 mouse_genomes_project 7 121003422 121051262 - 4933440M02Rik lincRNA lincRNA MGP_CASTEiJ_T0008780.1 MGP_CASTEiJ_G0007086.1 mouse_genomes_project 7 121042674 121047557 - 4933440M02Rik lincRNA lincRNA MGP_CASTEiJ_T0084700.1 MGP_CASTEiJ_G0031428.1 mouse_genomes_project 7 73061478 73063026 - MGP_CASTEiJ_P0084700 Mesp1 protein_coding protein_coding MGP_CASTEiJ_T0085198.1 MGP_CASTEiJ_G0031560.1 mouse_genomes_project 7 92483116 92555478 - MGP_CASTEiJ_P0085198 Myo7a protein_coding protein_coding MGP_CASTEiJ_T0085199.1 MGP_CASTEiJ_G0031560.1 mouse_genomes_project 7 92483119 92501392 - MGP_CASTEiJ_P0085199 Myo7a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085200.1 MGP_CASTEiJ_G0031560.1 mouse_genomes_project 7 92483457 92545205 - MGP_CASTEiJ_P0085200 Myo7a protein_coding protein_coding MGP_CASTEiJ_T0085201.1 MGP_CASTEiJ_G0031560.1 mouse_genomes_project 7 92483683 92555253 - MGP_CASTEiJ_P0085201 Myo7a protein_coding protein_coding MGP_CASTEiJ_T0085202.1 MGP_CASTEiJ_G0031560.1 mouse_genomes_project 7 92494639 92497225 - Myo7a protein_coding retained_intron MGP_CASTEiJ_T0085203.1 MGP_CASTEiJ_G0031560.1 mouse_genomes_project 7 92513222 92516759 - Myo7a protein_coding processed_transcript MGP_CASTEiJ_T0085204.1 MGP_CASTEiJ_G0031560.1 mouse_genomes_project 7 92531623 92548636 - Myo7a protein_coding processed_transcript MGP_CASTEiJ_T0085205.1 MGP_CASTEiJ_G0031560.1 mouse_genomes_project 7 92532198 92538908 - Myo7a protein_coding processed_transcript MGP_CASTEiJ_T0085206.1 MGP_CASTEiJ_G0031560.1 mouse_genomes_project 7 92532238 92538907 - Myo7a protein_coding processed_transcript MGP_CASTEiJ_T0085207.1 MGP_CASTEiJ_G0031560.1 mouse_genomes_project 7 92532247 92555447 - MGP_CASTEiJ_P0085207 Myo7a protein_coding protein_coding MGP_CASTEiJ_T0085208.1 MGP_CASTEiJ_G0031560.1 mouse_genomes_project 7 92544689 92555446 - Myo7a protein_coding processed_transcript MGP_CASTEiJ_T0008697.1 MGP_CASTEiJ_G0007037.1 mouse_genomes_project 7 67934382 67969427 - 0610006L08Rik lincRNA lincRNA MGP_CASTEiJ_T0008698.1 MGP_CASTEiJ_G0007037.1 mouse_genomes_project 7 67939195 67969424 - 0610006L08Rik lincRNA lincRNA MGP_CASTEiJ_T0015291.1 MGP_CASTEiJ_G0013454.1 mouse_genomes_project 7 101013914 101014674 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085847.1 MGP_CASTEiJ_G0031806.1 mouse_genomes_project 7 101815899 101816849 - MGP_CASTEiJ_P0085847 protein_coding protein_coding MGP_CASTEiJ_T0087405.1 MGP_CASTEiJ_G0032169.1 mouse_genomes_project 7 135636735 135650363 - MGP_CASTEiJ_P0087405 Mapk1ip1 protein_coding protein_coding MGP_CASTEiJ_T0087406.1 MGP_CASTEiJ_G0032169.1 mouse_genomes_project 7 135636745 135650350 - MGP_CASTEiJ_P0087406 Mapk1ip1 protein_coding protein_coding MGP_CASTEiJ_T0087407.1 MGP_CASTEiJ_G0032169.1 mouse_genomes_project 7 135636790 135650347 - MGP_CASTEiJ_P0087407 Mapk1ip1 protein_coding protein_coding MGP_CASTEiJ_T0084927.1 MGP_CASTEiJ_G0031474.1 mouse_genomes_project 7 75819194 75823535 + Adamtsl3 protein_coding processed_transcript MGP_CASTEiJ_T0084928.1 MGP_CASTEiJ_G0031474.1 mouse_genomes_project 7 75819232 76118060 + MGP_CASTEiJ_P0084928 Adamtsl3 protein_coding protein_coding MGP_CASTEiJ_T0084929.1 MGP_CASTEiJ_G0031474.1 mouse_genomes_project 7 75820719 76116037 + MGP_CASTEiJ_P0084929 Adamtsl3 protein_coding protein_coding MGP_CASTEiJ_T0084930.1 MGP_CASTEiJ_G0031474.1 mouse_genomes_project 7 75898743 75964110 + Adamtsl3 protein_coding retained_intron MGP_CASTEiJ_T0084931.1 MGP_CASTEiJ_G0031474.1 mouse_genomes_project 7 76115383 76116379 + MGP_CASTEiJ_P0084931 Adamtsl3 protein_coding protein_coding MGP_CASTEiJ_T0082193.1 MGP_CASTEiJ_G0030835.1 mouse_genomes_project 7 14503549 14507871 - MGP_CASTEiJ_P0082193 protein_coding protein_coding MGP_CASTEiJ_T0082194.1 MGP_CASTEiJ_G0030835.1 mouse_genomes_project 7 14503554 14504888 - MGP_CASTEiJ_P0082194 protein_coding protein_coding MGP_CASTEiJ_T0082195.1 MGP_CASTEiJ_G0030835.1 mouse_genomes_project 7 14503554 14512522 - MGP_CASTEiJ_P0082195 protein_coding protein_coding MGP_CASTEiJ_T0082196.1 MGP_CASTEiJ_G0030835.1 mouse_genomes_project 7 14503554 14509003 - MGP_CASTEiJ_P0082196 protein_coding protein_coding MGP_CASTEiJ_T0082197.1 MGP_CASTEiJ_G0030835.1 mouse_genomes_project 7 14504251 14512535 - MGP_CASTEiJ_P0082197 protein_coding protein_coding MGP_CASTEiJ_T0005092.1 MGP_CASTEiJ_G0004340.1 mouse_genomes_project 7 72227518 72266803 - Gm26633 antisense antisense MGP_CASTEiJ_T0087387.1 MGP_CASTEiJ_G0032161.1 mouse_genomes_project 7 132081592 132100497 - MGP_CASTEiJ_P0087387 Clrn3 protein_coding protein_coding MGP_CASTEiJ_T0082970.1 MGP_CASTEiJ_G0031034.1 mouse_genomes_project 7 22655533 22658828 - Zfp82 protein_coding retained_intron MGP_CASTEiJ_T0082972.1 MGP_CASTEiJ_G0031034.1 mouse_genomes_project 7 22657099 22663113 - Zfp82 protein_coding retained_intron MGP_CASTEiJ_T0082973.1 MGP_CASTEiJ_G0031034.1 mouse_genomes_project 7 22657101 22676732 - MGP_CASTEiJ_P0082973 Zfp82 protein_coding protein_coding MGP_CASTEiJ_T0082974.1 MGP_CASTEiJ_G0031034.1 mouse_genomes_project 7 22657216 22677493 - MGP_CASTEiJ_P0082974 Zfp82 protein_coding protein_coding MGP_CASTEiJ_T0082975.1 MGP_CASTEiJ_G0031034.1 mouse_genomes_project 7 22658334 22677398 - MGP_CASTEiJ_P0082975 Zfp82 protein_coding protein_coding MGP_CASTEiJ_T0082976.1 MGP_CASTEiJ_G0031034.1 mouse_genomes_project 7 22660289 22677416 - MGP_CASTEiJ_P0082976 Zfp82 protein_coding protein_coding MGP_CASTEiJ_T0085822.1 MGP_CASTEiJ_G0031789.1 mouse_genomes_project 7 100869131 100876371 - MGP_CASTEiJ_P0085822 Tpp1 protein_coding protein_coding MGP_CASTEiJ_T0008601.1 MGP_CASTEiJ_G0006962.1 mouse_genomes_project 7 25442876 25446561 - Gm12762 lincRNA lincRNA MGP_CASTEiJ_T0082747.1 MGP_CASTEiJ_G0030983.1 mouse_genomes_project 7 20843504 20855908 - MGP_CASTEiJ_P0082747 Plekhg2 protein_coding protein_coding MGP_CASTEiJ_T0082748.1 MGP_CASTEiJ_G0030983.1 mouse_genomes_project 7 20843505 20856252 - Plekhg2 protein_coding retained_intron MGP_CASTEiJ_T0082749.1 MGP_CASTEiJ_G0030983.1 mouse_genomes_project 7 20843505 20847017 - Plekhg2 protein_coding retained_intron MGP_CASTEiJ_T0082750.1 MGP_CASTEiJ_G0030983.1 mouse_genomes_project 7 20843505 20855249 - MGP_CASTEiJ_P0082750 Plekhg2 protein_coding protein_coding MGP_CASTEiJ_T0082751.1 MGP_CASTEiJ_G0030983.1 mouse_genomes_project 7 20843505 20856169 - MGP_CASTEiJ_P0082751 Plekhg2 protein_coding protein_coding MGP_CASTEiJ_T0082752.1 MGP_CASTEiJ_G0030983.1 mouse_genomes_project 7 20844992 20856274 - MGP_CASTEiJ_P0082752 Plekhg2 protein_coding protein_coding MGP_CASTEiJ_T0082753.1 MGP_CASTEiJ_G0030983.1 mouse_genomes_project 7 20847678 20849167 - Plekhg2 protein_coding retained_intron MGP_CASTEiJ_T0082754.1 MGP_CASTEiJ_G0030983.1 mouse_genomes_project 7 20852093 20855402 - MGP_CASTEiJ_P0082754 Plekhg2 protein_coding protein_coding MGP_CASTEiJ_T0082755.1 MGP_CASTEiJ_G0030983.1 mouse_genomes_project 7 20853755 20855755 - MGP_CASTEiJ_P0082755 Plekhg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082756.1 MGP_CASTEiJ_G0030983.1 mouse_genomes_project 7 20854090 20855183 - MGP_CASTEiJ_P0082756 Plekhg2 protein_coding protein_coding MGP_CASTEiJ_T0084625.1 MGP_CASTEiJ_G0031415.1 mouse_genomes_project 7 72266959 72331976 + MGP_CASTEiJ_P0084625 Acan protein_coding protein_coding MGP_CASTEiJ_T0084626.1 MGP_CASTEiJ_G0031415.1 mouse_genomes_project 7 72316618 72331505 + MGP_CASTEiJ_P0084626 Acan protein_coding protein_coding MGP_CASTEiJ_T0102585.1 MGP_CASTEiJ_G0039309.1 mouse_genomes_project 7 98266723 98267690 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0086228.1 MGP_CASTEiJ_G0031928.1 mouse_genomes_project 7 114140055 114163927 - MGP_CASTEiJ_P0086228 Gde1 protein_coding protein_coding MGP_CASTEiJ_T0086229.1 MGP_CASTEiJ_G0031928.1 mouse_genomes_project 7 114143107 114163529 - MGP_CASTEiJ_P0086229 Gde1 protein_coding protein_coding MGP_CASTEiJ_T0010618.1 MGP_CASTEiJ_G0008806.1 mouse_genomes_project 7 126948222 126948290 + Mir7061 miRNA miRNA MGP_CASTEiJ_T0086633.1 MGP_CASTEiJ_G0032015.1 mouse_genomes_project 7 122392127 122394585 - MGP_CASTEiJ_P0086633 Nupr1 protein_coding protein_coding MGP_CASTEiJ_T0086634.1 MGP_CASTEiJ_G0032015.1 mouse_genomes_project 7 122392130 122395902 - Nupr1 protein_coding retained_intron MGP_CASTEiJ_T0086635.1 MGP_CASTEiJ_G0032015.1 mouse_genomes_project 7 122392156 122394253 - MGP_CASTEiJ_P0086635 Nupr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086636.1 MGP_CASTEiJ_G0032015.1 mouse_genomes_project 7 122392320 122394384 - MGP_CASTEiJ_P0086636 Nupr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086637.1 MGP_CASTEiJ_G0032015.1 mouse_genomes_project 7 122393857 122399533 - Nupr1 protein_coding processed_transcript MGP_CASTEiJ_T0086638.1 MGP_CASTEiJ_G0032015.1 mouse_genomes_project 7 122393857 122394899 - Nupr1 protein_coding processed_transcript MGP_CASTEiJ_T0008620.1 MGP_CASTEiJ_G0006980.1 mouse_genomes_project 7 29611110 29631658 + Gm44635 lincRNA lincRNA MGP_CASTEiJ_T0008597.1 MGP_CASTEiJ_G0006958.1 mouse_genomes_project 7 23308112 23310227 + Gm26610 lincRNA lincRNA MGP_CASTEiJ_T0008823.1 MGP_CASTEiJ_G0007115.1 mouse_genomes_project 7 136848704 136849748 - Gm2044 lincRNA lincRNA MGP_CASTEiJ_T0002239.1 MGP_CASTEiJ_G0002158.1 mouse_genomes_project 7 123513193 123514362 - TEC TEC MGP_CASTEiJ_T0100012.1 MGP_CASTEiJ_G0036925.1 mouse_genomes_project 7 56100210 56100311 + Gm22228 snRNA snRNA MGP_CASTEiJ_T0085846.1 MGP_CASTEiJ_G0031805.1 mouse_genomes_project 7 101802694 101803645 - MGP_CASTEiJ_P0085846 protein_coding protein_coding MGP_CASTEiJ_T0085698.1 MGP_CASTEiJ_G0031744.1 mouse_genomes_project 7 99541403 99542429 + MGP_CASTEiJ_P0085698 Olfr654 protein_coding protein_coding MGP_CASTEiJ_T0087534.1 MGP_CASTEiJ_G0032205.1 mouse_genomes_project 7 137334984 137335914 - MGP_CASTEiJ_P0087534 Olfr532 protein_coding protein_coding MGP_CASTEiJ_T0085881.1 MGP_CASTEiJ_G0031833.1 mouse_genomes_project 7 102956095 102957040 - MGP_CASTEiJ_P0085881 Olfr478 protein_coding protein_coding MGP_CASTEiJ_T0008572.1 MGP_CASTEiJ_G0006937.1 mouse_genomes_project 7 469493 488007 - Gm44920 lincRNA lincRNA MGP_CASTEiJ_T0015146.1 MGP_CASTEiJ_G0013309.1 mouse_genomes_project 7 12716921 12717620 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0086217.1 MGP_CASTEiJ_G0031925.1 mouse_genomes_project 7 113936388 113960145 - MGP_CASTEiJ_P0086217 Coq7 protein_coding protein_coding MGP_CASTEiJ_T0086218.1 MGP_CASTEiJ_G0031925.1 mouse_genomes_project 7 113951884 113960200 - MGP_CASTEiJ_P0086218 Coq7 protein_coding protein_coding MGP_CASTEiJ_T0086219.1 MGP_CASTEiJ_G0031925.1 mouse_genomes_project 7 113953626 113960158 - Coq7 protein_coding retained_intron MGP_CASTEiJ_T0085872.1 MGP_CASTEiJ_G0031825.1 mouse_genomes_project 7 102556680 102557871 - MGP_CASTEiJ_P0085872 5330417H12Rik protein_coding protein_coding MGP_CASTEiJ_T0002142.1 MGP_CASTEiJ_G0002062.1 mouse_genomes_project 7 28187704 28189246 + TEC TEC MGP_CASTEiJ_T0082787.1 MGP_CASTEiJ_G0030992.1 mouse_genomes_project 7 21115055 21141948 - MGP_CASTEiJ_P0082787 protein_coding protein_coding MGP_CASTEiJ_T0082788.1 MGP_CASTEiJ_G0030992.1 mouse_genomes_project 7 21123916 21141388 - protein_coding processed_transcript MGP_CASTEiJ_T0082789.1 MGP_CASTEiJ_G0030992.1 mouse_genomes_project 7 21124387 21141388 - protein_coding processed_transcript MGP_CASTEiJ_T0082790.1 MGP_CASTEiJ_G0030992.1 mouse_genomes_project 7 21140370 21141381 - protein_coding processed_transcript MGP_CASTEiJ_T0082791.1 MGP_CASTEiJ_G0030992.1 mouse_genomes_project 7 21140403 21142211 - protein_coding processed_transcript MGP_CASTEiJ_T0081732.1 MGP_CASTEiJ_G0030692.1 mouse_genomes_project 7 5993601 5995638 - MGP_CASTEiJ_P0081732 Vmn1r71 protein_coding protein_coding MGP_CASTEiJ_T0083687.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892165 36895802 + MGP_CASTEiJ_P0083687 Josd2 protein_coding protein_coding MGP_CASTEiJ_T0083688.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892191 36894366 + Josd2 protein_coding retained_intron MGP_CASTEiJ_T0083689.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892207 36895799 + MGP_CASTEiJ_P0083689 Josd2 protein_coding protein_coding MGP_CASTEiJ_T0083690.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892208 36895801 + MGP_CASTEiJ_P0083690 Josd2 protein_coding protein_coding MGP_CASTEiJ_T0083691.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892221 36895686 + MGP_CASTEiJ_P0083691 Josd2 protein_coding protein_coding MGP_CASTEiJ_T0083692.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892224 36895810 + MGP_CASTEiJ_P0083692 Josd2 protein_coding protein_coding MGP_CASTEiJ_T0083693.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892228 36893498 + Josd2 protein_coding retained_intron MGP_CASTEiJ_T0083694.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892230 36895798 + MGP_CASTEiJ_P0083694 Josd2 protein_coding protein_coding MGP_CASTEiJ_T0083695.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892235 36893622 + Josd2 protein_coding retained_intron MGP_CASTEiJ_T0083696.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892257 36895771 + MGP_CASTEiJ_P0083696 Josd2 protein_coding protein_coding MGP_CASTEiJ_T0083697.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892261 36893535 + Josd2 protein_coding retained_intron MGP_CASTEiJ_T0083698.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892270 36895326 + MGP_CASTEiJ_P0083698 Josd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083699.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892274 36894036 + Josd2 protein_coding processed_transcript MGP_CASTEiJ_T0083700.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892274 36895801 + MGP_CASTEiJ_P0083700 Josd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083701.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892279 36895793 + MGP_CASTEiJ_P0083701 Josd2 protein_coding protein_coding MGP_CASTEiJ_T0083702.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892336 36895802 + Josd2 protein_coding retained_intron MGP_CASTEiJ_T0083703.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36892367 36893156 + Josd2 protein_coding retained_intron MGP_CASTEiJ_T0083704.1 MGP_CASTEiJ_G0031198.1 mouse_genomes_project 7 36893011 36895753 + Josd2 protein_coding processed_transcript MGP_CASTEiJ_T0086109.1 MGP_CASTEiJ_G0031909.1 mouse_genomes_project 7 109782559 109795348 - MGP_CASTEiJ_P0086109 Cyp2r1 protein_coding protein_coding MGP_CASTEiJ_T0086110.1 MGP_CASTEiJ_G0031909.1 mouse_genomes_project 7 109782615 109795346 - MGP_CASTEiJ_P0086110 Cyp2r1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086111.1 MGP_CASTEiJ_G0031909.1 mouse_genomes_project 7 109782626 109795338 - MGP_CASTEiJ_P0086111 Cyp2r1 protein_coding protein_coding MGP_CASTEiJ_T0086112.1 MGP_CASTEiJ_G0031909.1 mouse_genomes_project 7 109782640 109787128 - Cyp2r1 protein_coding processed_transcript MGP_CASTEiJ_T0086113.1 MGP_CASTEiJ_G0031909.1 mouse_genomes_project 7 109782640 109787124 - MGP_CASTEiJ_P0086113 Cyp2r1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086114.1 MGP_CASTEiJ_G0031909.1 mouse_genomes_project 7 109782642 109795338 - MGP_CASTEiJ_P0086114 Cyp2r1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0015196.1 MGP_CASTEiJ_G0013359.1 mouse_genomes_project 7 33244983 33245467 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099014.1 MGP_CASTEiJ_G0035933.1 mouse_genomes_project 7 141639071 141639532 - Gm14376 sense_intronic sense_intronic MGP_CASTEiJ_T0085062.1 MGP_CASTEiJ_G0031532.1 mouse_genomes_project 7 84435710 84549361 + MGP_CASTEiJ_P0085062 Sytl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085063.1 MGP_CASTEiJ_G0031532.1 mouse_genomes_project 7 84485563 84549359 + MGP_CASTEiJ_P0085063 Sytl2 protein_coding protein_coding MGP_CASTEiJ_T0085064.1 MGP_CASTEiJ_G0031532.1 mouse_genomes_project 7 84485563 84549359 + MGP_CASTEiJ_P0085064 Sytl2 protein_coding protein_coding MGP_CASTEiJ_T0085065.1 MGP_CASTEiJ_G0031532.1 mouse_genomes_project 7 84485563 84549359 + MGP_CASTEiJ_P0085065 Sytl2 protein_coding protein_coding MGP_CASTEiJ_T0085066.1 MGP_CASTEiJ_G0031532.1 mouse_genomes_project 7 84485563 84549359 + MGP_CASTEiJ_P0085066 Sytl2 protein_coding protein_coding MGP_CASTEiJ_T0085067.1 MGP_CASTEiJ_G0031532.1 mouse_genomes_project 7 84518567 84549359 + Sytl2 protein_coding processed_transcript MGP_CASTEiJ_T0085068.1 MGP_CASTEiJ_G0031532.1 mouse_genomes_project 7 84518589 84549359 + Sytl2 protein_coding processed_transcript MGP_CASTEiJ_T0085069.1 MGP_CASTEiJ_G0031532.1 mouse_genomes_project 7 84537150 84549359 + Sytl2 protein_coding processed_transcript MGP_CASTEiJ_T0085629.1 MGP_CASTEiJ_G0031695.1 mouse_genomes_project 7 98397057 98398014 + MGP_CASTEiJ_P0085629 Olfr618 protein_coding protein_coding MGP_CASTEiJ_T0005055.1 MGP_CASTEiJ_G0004314.1 mouse_genomes_project 7 25446837 25452676 + Gm12758 antisense antisense MGP_CASTEiJ_T0005056.1 MGP_CASTEiJ_G0004314.1 mouse_genomes_project 7 25446897 25448015 + Gm12758 antisense antisense MGP_CASTEiJ_T0102561.1 MGP_CASTEiJ_G0039285.1 mouse_genomes_project 7 79165181 79166630 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0086256.1 MGP_CASTEiJ_G0031932.1 mouse_genomes_project 7 114323176 114380727 + Iqck protein_coding retained_intron MGP_CASTEiJ_T0086257.1 MGP_CASTEiJ_G0031932.1 mouse_genomes_project 7 114323191 114457019 + MGP_CASTEiJ_P0086257 Iqck protein_coding protein_coding MGP_CASTEiJ_T0086258.1 MGP_CASTEiJ_G0031932.1 mouse_genomes_project 7 114323191 114457551 + MGP_CASTEiJ_P0086258 Iqck protein_coding protein_coding MGP_CASTEiJ_T0086259.1 MGP_CASTEiJ_G0031932.1 mouse_genomes_project 7 114323191 114457187 + MGP_CASTEiJ_P0086259 Iqck protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086260.1 MGP_CASTEiJ_G0031932.1 mouse_genomes_project 7 114417320 114456665 + Iqck protein_coding processed_transcript MGP_CASTEiJ_T0015137.1 MGP_CASTEiJ_G0013300.1 mouse_genomes_project 7 9192461 9194606 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0086882.1 MGP_CASTEiJ_G0032059.1 mouse_genomes_project 7 123178250 123180879 - MGP_CASTEiJ_P0086882 Zfp768 protein_coding protein_coding MGP_CASTEiJ_T0086883.1 MGP_CASTEiJ_G0032059.1 mouse_genomes_project 7 123178250 123181045 - MGP_CASTEiJ_P0086883 Zfp768 protein_coding protein_coding MGP_CASTEiJ_T0085598.1 MGP_CASTEiJ_G0031665.1 mouse_genomes_project 7 97765144 97766083 - MGP_CASTEiJ_P0085598 Olfr577 protein_coding protein_coding MGP_CASTEiJ_T0086044.1 MGP_CASTEiJ_G0031892.1 mouse_genomes_project 7 107134766 107226512 + MGP_CASTEiJ_P0086044 Usp47 protein_coding protein_coding MGP_CASTEiJ_T0086045.1 MGP_CASTEiJ_G0031892.1 mouse_genomes_project 7 107134968 107226517 + MGP_CASTEiJ_P0086045 Usp47 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083393.1 MGP_CASTEiJ_G0031121.1 mouse_genomes_project 7 26413791 26416431 + MGP_CASTEiJ_P0083393 Cebpa protein_coding protein_coding MGP_CASTEiJ_T0083394.1 MGP_CASTEiJ_G0031121.1 mouse_genomes_project 7 26413801 26416431 + MGP_CASTEiJ_P0083394 Cebpa protein_coding protein_coding MGP_CASTEiJ_T0083720.1 MGP_CASTEiJ_G0031201.1 mouse_genomes_project 7 36928494 36957354 - MGP_CASTEiJ_P0083720 Mybpc2 protein_coding protein_coding MGP_CASTEiJ_T0015208.1 MGP_CASTEiJ_G0013371.1 mouse_genomes_project 7 36079801 36080106 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002208.1 MGP_CASTEiJ_G0002127.1 mouse_genomes_project 7 73192470 73195564 - TEC TEC MGP_CASTEiJ_T0008661.1 MGP_CASTEiJ_G0007009.1 mouse_genomes_project 7 60947392 60957646 - Gm16157 lincRNA lincRNA MGP_CASTEiJ_T0008662.1 MGP_CASTEiJ_G0007009.1 mouse_genomes_project 7 60949513 60959109 - Gm16157 lincRNA lincRNA MGP_CASTEiJ_T0082440.1 MGP_CASTEiJ_G0030903.1 mouse_genomes_project 7 17527958 17536004 - MGP_CASTEiJ_P0082440 Erf protein_coding protein_coding MGP_CASTEiJ_T0082441.1 MGP_CASTEiJ_G0030903.1 mouse_genomes_project 7 17530694 17535973 - MGP_CASTEiJ_P0082441 Erf protein_coding protein_coding MGP_CASTEiJ_T0100046.1 MGP_CASTEiJ_G0036959.1 mouse_genomes_project 7 124665197 124665299 + Gm23783 snRNA snRNA MGP_CASTEiJ_T0010539.1 MGP_CASTEiJ_G0008727.1 mouse_genomes_project 7 16502949 16503075 - Gm27592 miRNA miRNA MGP_CASTEiJ_T0086544.1 MGP_CASTEiJ_G0032000.1 mouse_genomes_project 7 122019021 122041139 + MGP_CASTEiJ_P0086544 Sbk1 protein_coding protein_coding MGP_CASTEiJ_T0086545.1 MGP_CASTEiJ_G0032000.1 mouse_genomes_project 7 122019814 122036060 + MGP_CASTEiJ_P0086545 Sbk1 protein_coding protein_coding MGP_CASTEiJ_T0086546.1 MGP_CASTEiJ_G0032000.1 mouse_genomes_project 7 122037205 122038946 + MGP_CASTEiJ_P0086546 Sbk1 protein_coding protein_coding MGP_CASTEiJ_T0008649.1 MGP_CASTEiJ_G0007000.1 mouse_genomes_project 7 56544457 56566890 + Gm45055 lincRNA lincRNA MGP_CASTEiJ_T0008650.1 MGP_CASTEiJ_G0007000.1 mouse_genomes_project 7 56552266 56566860 + Gm45055 lincRNA lincRNA MGP_CASTEiJ_T0015238.1 MGP_CASTEiJ_G0013401.1 mouse_genomes_project 7 66721426 66721792 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083368.1 MGP_CASTEiJ_G0031117.1 mouse_genomes_project 7 25876357 25892842 - MGP_CASTEiJ_P0083368 Kctd15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083369.1 MGP_CASTEiJ_G0031117.1 mouse_genomes_project 7 25876360 25892923 - MGP_CASTEiJ_P0083369 Kctd15 protein_coding protein_coding MGP_CASTEiJ_T0083370.1 MGP_CASTEiJ_G0031117.1 mouse_genomes_project 7 25876361 25891361 - MGP_CASTEiJ_P0083370 Kctd15 protein_coding protein_coding MGP_CASTEiJ_T0083371.1 MGP_CASTEiJ_G0031117.1 mouse_genomes_project 7 25876365 25895359 - MGP_CASTEiJ_P0083371 Kctd15 protein_coding protein_coding MGP_CASTEiJ_T0083372.1 MGP_CASTEiJ_G0031117.1 mouse_genomes_project 7 25877526 25886083 - Kctd15 protein_coding processed_transcript MGP_CASTEiJ_T0083373.1 MGP_CASTEiJ_G0031117.1 mouse_genomes_project 7 25887325 25892914 - MGP_CASTEiJ_P0083373 Kctd15 protein_coding protein_coding MGP_CASTEiJ_T0083374.1 MGP_CASTEiJ_G0031117.1 mouse_genomes_project 7 25891155 25891550 - Kctd15 protein_coding processed_transcript MGP_CASTEiJ_T0083375.1 MGP_CASTEiJ_G0031117.1 mouse_genomes_project 7 25891155 25891836 - Kctd15 protein_coding processed_transcript MGP_CASTEiJ_T0083376.1 MGP_CASTEiJ_G0031117.1 mouse_genomes_project 7 25895219 25896582 - Kctd15 protein_coding processed_transcript MGP_CASTEiJ_T0081821.1 MGP_CASTEiJ_G0030728.1 mouse_genomes_project 7 8376481 8396253 - MGP_CASTEiJ_P0081821 6330408A02Rik protein_coding protein_coding MGP_CASTEiJ_T0081822.1 MGP_CASTEiJ_G0030728.1 mouse_genomes_project 7 8376481 8395714 - MGP_CASTEiJ_P0081822 6330408A02Rik protein_coding protein_coding MGP_CASTEiJ_T0081823.1 MGP_CASTEiJ_G0030728.1 mouse_genomes_project 7 8376482 8396291 - MGP_CASTEiJ_P0081823 6330408A02Rik protein_coding protein_coding MGP_CASTEiJ_T0081824.1 MGP_CASTEiJ_G0030728.1 mouse_genomes_project 7 8383280 8396291 - 6330408A02Rik protein_coding retained_intron MGP_CASTEiJ_T0081825.1 MGP_CASTEiJ_G0030728.1 mouse_genomes_project 7 8390794 8396240 - 6330408A02Rik protein_coding retained_intron MGP_CASTEiJ_T0081826.1 MGP_CASTEiJ_G0030728.1 mouse_genomes_project 7 8390903 8395992 - 6330408A02Rik protein_coding retained_intron MGP_CASTEiJ_T0081827.1 MGP_CASTEiJ_G0030728.1 mouse_genomes_project 7 8394849 8396232 - MGP_CASTEiJ_P0081827 6330408A02Rik protein_coding protein_coding MGP_CASTEiJ_T0085268.1 MGP_CASTEiJ_G0031577.1 mouse_genomes_project 7 93982170 93990224 + MGP_CASTEiJ_P0085268 Klhl35 protein_coding protein_coding MGP_CASTEiJ_T0085269.1 MGP_CASTEiJ_G0031577.1 mouse_genomes_project 7 93985085 93987915 + MGP_CASTEiJ_P0085269 Klhl35 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085270.1 MGP_CASTEiJ_G0031577.1 mouse_genomes_project 7 93986075 93988002 + Klhl35 protein_coding retained_intron MGP_CASTEiJ_T0085271.1 MGP_CASTEiJ_G0031577.1 mouse_genomes_project 7 93987954 93989806 + MGP_CASTEiJ_P0085271 Klhl35 protein_coding protein_coding MGP_CASTEiJ_T0085574.1 MGP_CASTEiJ_G0031643.1 mouse_genomes_project 7 97361443 97362522 - MGP_CASTEiJ_P0085574 Olfr551 protein_coding protein_coding MGP_CASTEiJ_T0101281.1 MGP_CASTEiJ_G0038194.1 mouse_genomes_project 7 138376091 138376221 - Gm25725 snoRNA snoRNA MGP_CASTEiJ_T0083617.1 MGP_CASTEiJ_G0031174.1 mouse_genomes_project 7 35915743 35933689 + MGP_CASTEiJ_P0083617 Klk13 protein_coding protein_coding MGP_CASTEiJ_T0083618.1 MGP_CASTEiJ_G0031174.1 mouse_genomes_project 7 35916575 35924520 + MGP_CASTEiJ_P0083618 Klk13 protein_coding protein_coding MGP_CASTEiJ_T0083619.1 MGP_CASTEiJ_G0031174.1 mouse_genomes_project 7 35918144 35930035 + MGP_CASTEiJ_P0083619 Klk13 protein_coding protein_coding MGP_CASTEiJ_T0008804.1 MGP_CASTEiJ_G0007100.1 mouse_genomes_project 7 124405389 124418138 - Gm45018 lincRNA lincRNA MGP_CASTEiJ_T0002251.1 MGP_CASTEiJ_G0002170.1 mouse_genomes_project 7 140454882 140458398 - TEC TEC MGP_CASTEiJ_T0005132.1 MGP_CASTEiJ_G0004367.1 mouse_genomes_project 7 108725294 108751023 - Far1os antisense antisense MGP_CASTEiJ_T0005133.1 MGP_CASTEiJ_G0004367.1 mouse_genomes_project 7 108732659 108759658 - Far1os antisense antisense MGP_CASTEiJ_T0010599.1 MGP_CASTEiJ_G0008787.1 mouse_genomes_project 7 90686474 90686573 + Mir6394 miRNA miRNA MGP_CASTEiJ_T0098396.1 MGP_CASTEiJ_G0035327.1 mouse_genomes_project 7 75471052 75471676 + pseudogene pseudogene MGP_CASTEiJ_T0081735.1 MGP_CASTEiJ_G0030695.1 mouse_genomes_project 7 6893715 6894627 + MGP_CASTEiJ_P0081735 Vmn1r73 protein_coding protein_coding MGP_CASTEiJ_T0081713.1 MGP_CASTEiJ_G0030680.1 mouse_genomes_project 7 3689680 3945219 + MGP_CASTEiJ_P0081713 Usp29 protein_coding protein_coding MGP_CASTEiJ_T0081714.1 MGP_CASTEiJ_G0030680.1 mouse_genomes_project 7 3689838 3939767 + MGP_CASTEiJ_P0081714 Usp29 protein_coding protein_coding MGP_CASTEiJ_T0081715.1 MGP_CASTEiJ_G0030680.1 mouse_genomes_project 7 3927028 3942838 + MGP_CASTEiJ_P0081715 Usp29 protein_coding protein_coding MGP_CASTEiJ_T0081716.1 MGP_CASTEiJ_G0030680.1 mouse_genomes_project 7 3939172 3941782 + MGP_CASTEiJ_P0081716 Usp29 protein_coding protein_coding MGP_CASTEiJ_T0002149.1 MGP_CASTEiJ_G0002069.1 mouse_genomes_project 7 31700483 31703782 - TEC TEC MGP_CASTEiJ_T0086012.1 MGP_CASTEiJ_G0031887.1 mouse_genomes_project 7 105913410 105925748 - MGP_CASTEiJ_P0086012 Lyve1 protein_coding protein_coding MGP_CASTEiJ_T0015323.1 MGP_CASTEiJ_G0013486.1 mouse_genomes_project 7 124617617 124617901 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085641.1 MGP_CASTEiJ_G0031707.1 mouse_genomes_project 7 98644271 98645719 - MGP_CASTEiJ_P0085641 protein_coding protein_coding MGP_CASTEiJ_T0087526.1 MGP_CASTEiJ_G0032199.1 mouse_genomes_project 7 137161262 137207787 + MGP_CASTEiJ_P0087526 5830411N06Rik protein_coding protein_coding MGP_CASTEiJ_T0087527.1 MGP_CASTEiJ_G0032199.1 mouse_genomes_project 7 137161339 137210067 + MGP_CASTEiJ_P0087527 5830411N06Rik protein_coding protein_coding MGP_CASTEiJ_T0087528.1 MGP_CASTEiJ_G0032199.1 mouse_genomes_project 7 137161342 137210067 + MGP_CASTEiJ_P0087528 5830411N06Rik protein_coding protein_coding MGP_CASTEiJ_T0101261.1 MGP_CASTEiJ_G0038174.1 mouse_genomes_project 7 94180582 94180713 - Gm25409 snoRNA snoRNA MGP_CASTEiJ_T0081661.1 MGP_CASTEiJ_G0030659.1 mouse_genomes_project 7 3009687 3039219 + MGP_CASTEiJ_P0081661 Nlrp4c protein_coding protein_coding MGP_CASTEiJ_T0082901.1 MGP_CASTEiJ_G0031017.1 mouse_genomes_project 7 21795929 21797821 - MGP_CASTEiJ_P0082901 2200002D01Rik protein_coding protein_coding MGP_CASTEiJ_T0082902.1 MGP_CASTEiJ_G0031017.1 mouse_genomes_project 7 21796966 21797727 - 2200002D01Rik protein_coding retained_intron MGP_CASTEiJ_T0008629.1 MGP_CASTEiJ_G0006984.1 mouse_genomes_project 7 31881468 31888870 + 4933404I11Rik lincRNA lincRNA MGP_CASTEiJ_T0086431.1 MGP_CASTEiJ_G0031981.1 mouse_genomes_project 7 117866687 117870083 + MGP_CASTEiJ_P0086431 Chp2 protein_coding protein_coding MGP_CASTEiJ_T0086432.1 MGP_CASTEiJ_G0031981.1 mouse_genomes_project 7 117868819 117869431 + Chp2 protein_coding processed_transcript MGP_CASTEiJ_T0082433.1 MGP_CASTEiJ_G0030900.1 mouse_genomes_project 7 17479548 17503637 - MGP_CASTEiJ_P0082433 Dedd2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082434.1 MGP_CASTEiJ_G0030900.1 mouse_genomes_project 7 17479558 17503594 - Dedd2 protein_coding processed_transcript MGP_CASTEiJ_T0082435.1 MGP_CASTEiJ_G0030900.1 mouse_genomes_project 7 17500833 17503606 - Dedd2 protein_coding retained_intron MGP_CASTEiJ_T0015249.1 MGP_CASTEiJ_G0013412.1 mouse_genomes_project 7 74281892 74282216 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084007.1 MGP_CASTEiJ_G0031276.1 mouse_genomes_project 7 38287673 38292740 + MGP_CASTEiJ_P0084007 Dbp protein_coding protein_coding MGP_CASTEiJ_T0084008.1 MGP_CASTEiJ_G0031276.1 mouse_genomes_project 7 38288208 38292699 + MGP_CASTEiJ_P0084008 Dbp protein_coding protein_coding MGP_CASTEiJ_T0084009.1 MGP_CASTEiJ_G0031276.1 mouse_genomes_project 7 38288208 38292699 + MGP_CASTEiJ_P0084009 Dbp protein_coding protein_coding MGP_CASTEiJ_T0084010.1 MGP_CASTEiJ_G0031276.1 mouse_genomes_project 7 38289687 38292613 + Dbp protein_coding retained_intron MGP_CASTEiJ_T0084011.1 MGP_CASTEiJ_G0031276.1 mouse_genomes_project 7 38290472 38292481 + Dbp protein_coding retained_intron MGP_CASTEiJ_T0083582.1 MGP_CASTEiJ_G0031163.1 mouse_genomes_project 7 35635615 35644405 + MGP_CASTEiJ_P0083582 Vsig10l protein_coding protein_coding MGP_CASTEiJ_T0083583.1 MGP_CASTEiJ_G0031163.1 mouse_genomes_project 7 35635697 35643430 + MGP_CASTEiJ_P0083583 Vsig10l protein_coding protein_coding MGP_CASTEiJ_T0083584.1 MGP_CASTEiJ_G0031163.1 mouse_genomes_project 7 35637142 35637797 + Vsig10l protein_coding retained_intron MGP_CASTEiJ_T0083585.1 MGP_CASTEiJ_G0031163.1 mouse_genomes_project 7 35638177 35640143 + Vsig10l protein_coding processed_transcript MGP_CASTEiJ_T0083586.1 MGP_CASTEiJ_G0031163.1 mouse_genomes_project 7 35640079 35643385 + MGP_CASTEiJ_P0083586 Vsig10l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084631.1 MGP_CASTEiJ_G0031417.1 mouse_genomes_project 7 72353504 72363607 - Mfge8 protein_coding retained_intron MGP_CASTEiJ_T0084632.1 MGP_CASTEiJ_G0031417.1 mouse_genomes_project 7 72353505 72365554 - MGP_CASTEiJ_P0084632 Mfge8 protein_coding protein_coding MGP_CASTEiJ_T0084633.1 MGP_CASTEiJ_G0031417.1 mouse_genomes_project 7 72353853 72365554 - MGP_CASTEiJ_P0084633 Mfge8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084634.1 MGP_CASTEiJ_G0031417.1 mouse_genomes_project 7 72353876 72356787 - Mfge8 protein_coding retained_intron MGP_CASTEiJ_T0084635.1 MGP_CASTEiJ_G0031417.1 mouse_genomes_project 7 72354146 72386888 - MGP_CASTEiJ_P0084635 Mfge8 protein_coding protein_coding MGP_CASTEiJ_T0084636.1 MGP_CASTEiJ_G0031417.1 mouse_genomes_project 7 72356305 72362628 - Mfge8 protein_coding retained_intron MGP_CASTEiJ_T0084637.1 MGP_CASTEiJ_G0031417.1 mouse_genomes_project 7 72361698 72362871 - Mfge8 protein_coding retained_intron MGP_CASTEiJ_T0084638.1 MGP_CASTEiJ_G0031417.1 mouse_genomes_project 7 72362689 72368912 - Mfge8 protein_coding processed_transcript MGP_CASTEiJ_T0084639.1 MGP_CASTEiJ_G0031417.1 mouse_genomes_project 7 72365143 72369581 - Mfge8 protein_coding processed_transcript MGP_CASTEiJ_T0084393.1 MGP_CASTEiJ_G0031373.1 mouse_genomes_project 7 57292643 57706516 - MGP_CASTEiJ_P0084393 Fam189a1 protein_coding protein_coding MGP_CASTEiJ_T0084394.1 MGP_CASTEiJ_G0031373.1 mouse_genomes_project 7 57292665 57310198 - Fam189a1 protein_coding processed_transcript MGP_CASTEiJ_T0084395.1 MGP_CASTEiJ_G0031373.1 mouse_genomes_project 7 57304253 57469358 - MGP_CASTEiJ_P0084395 Fam189a1 protein_coding protein_coding MGP_CASTEiJ_T0084396.1 MGP_CASTEiJ_G0031373.1 mouse_genomes_project 7 57323384 57706362 - MGP_CASTEiJ_P0084396 Fam189a1 protein_coding protein_coding MGP_CASTEiJ_T0084397.1 MGP_CASTEiJ_G0031373.1 mouse_genomes_project 7 57357658 57395616 - Fam189a1 protein_coding retained_intron MGP_CASTEiJ_T0085037.1 MGP_CASTEiJ_G0031522.1 mouse_genomes_project 7 83537957 83543699 + MGP_CASTEiJ_P0085037 Fzd4 protein_coding protein_coding MGP_CASTEiJ_T0015247.1 MGP_CASTEiJ_G0013410.1 mouse_genomes_project 7 73547834 73548502 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011355.1 MGP_CASTEiJ_G0009543.1 mouse_genomes_project 7 68074664 68075019 - Gm22326 misc_RNA misc_RNA MGP_CASTEiJ_T0005046.1 MGP_CASTEiJ_G0004307.1 mouse_genomes_project 7 23381553 23400095 + Tmem147os antisense antisense MGP_CASTEiJ_T0005047.1 MGP_CASTEiJ_G0004307.1 mouse_genomes_project 7 23384431 23389865 + Tmem147os antisense antisense MGP_CASTEiJ_T0100001.1 MGP_CASTEiJ_G0036914.1 mouse_genomes_project 7 22999181 22999374 - Gm25259 snRNA snRNA MGP_CASTEiJ_T0085576.1 MGP_CASTEiJ_G0031645.1 mouse_genomes_project 7 97397210 97398191 - MGP_CASTEiJ_P0085576 Olfr553 protein_coding protein_coding MGP_CASTEiJ_T0010526.1 MGP_CASTEiJ_G0008714.1 mouse_genomes_project 7 111543 111625 + Mir294 miRNA miRNA MGP_CASTEiJ_T0085584.1 MGP_CASTEiJ_G0031653.1 mouse_genomes_project 7 97506319 97509431 - MGP_CASTEiJ_P0085584 protein_coding protein_coding MGP_CASTEiJ_T0087242.1 MGP_CASTEiJ_G0032125.1 mouse_genomes_project 7 127291137 127367777 + MGP_CASTEiJ_P0087242 5430419D17Rik protein_coding protein_coding MGP_CASTEiJ_T0087243.1 MGP_CASTEiJ_G0032125.1 mouse_genomes_project 7 127291156 127429908 + MGP_CASTEiJ_P0087243 5430419D17Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0087244.1 MGP_CASTEiJ_G0032125.1 mouse_genomes_project 7 127322878 127347366 + 5430419D17Rik protein_coding retained_intron MGP_CASTEiJ_T0084308.1 MGP_CASTEiJ_G0031355.1 mouse_genomes_project 7 52026640 52094921 + MGP_CASTEiJ_P0084308 Ube3a protein_coding protein_coding MGP_CASTEiJ_T0084309.1 MGP_CASTEiJ_G0031355.1 mouse_genomes_project 7 52026641 52110165 + MGP_CASTEiJ_P0084309 Ube3a protein_coding protein_coding MGP_CASTEiJ_T0084310.1 MGP_CASTEiJ_G0031355.1 mouse_genomes_project 7 52026692 52047770 + MGP_CASTEiJ_P0084310 Ube3a protein_coding protein_coding MGP_CASTEiJ_T0084311.1 MGP_CASTEiJ_G0031355.1 mouse_genomes_project 7 52026692 52075495 + MGP_CASTEiJ_P0084311 Ube3a protein_coding protein_coding MGP_CASTEiJ_T0084312.1 MGP_CASTEiJ_G0031355.1 mouse_genomes_project 7 52026692 52114970 + MGP_CASTEiJ_P0084312 Ube3a protein_coding protein_coding MGP_CASTEiJ_T0084313.1 MGP_CASTEiJ_G0031355.1 mouse_genomes_project 7 52026712 52091891 + Ube3a protein_coding retained_intron MGP_CASTEiJ_T0084314.1 MGP_CASTEiJ_G0031355.1 mouse_genomes_project 7 52027067 52079491 + Ube3a protein_coding processed_transcript MGP_CASTEiJ_T0084315.1 MGP_CASTEiJ_G0031355.1 mouse_genomes_project 7 52027115 52048113 + Ube3a protein_coding processed_transcript MGP_CASTEiJ_T0084316.1 MGP_CASTEiJ_G0031355.1 mouse_genomes_project 7 52027173 52079754 + MGP_CASTEiJ_P0084316 Ube3a protein_coding protein_coding MGP_CASTEiJ_T0084317.1 MGP_CASTEiJ_G0031355.1 mouse_genomes_project 7 52027456 52108449 + MGP_CASTEiJ_P0084317 Ube3a protein_coding unknown_likely_coding MGP_CASTEiJ_T0084318.1 MGP_CASTEiJ_G0031355.1 mouse_genomes_project 7 52042592 52075405 + MGP_CASTEiJ_P0084318 Ube3a protein_coding protein_coding MGP_CASTEiJ_T0084319.1 MGP_CASTEiJ_G0031355.1 mouse_genomes_project 7 52080337 52085306 + Ube3a protein_coding retained_intron MGP_CASTEiJ_T0084320.1 MGP_CASTEiJ_G0031355.1 mouse_genomes_project 7 52086925 52090183 + Ube3a protein_coding retained_intron MGP_CASTEiJ_T0084321.1 MGP_CASTEiJ_G0031355.1 mouse_genomes_project 7 52090598 52108385 + MGP_CASTEiJ_P0084321 Ube3a protein_coding protein_coding MGP_CASTEiJ_T0084322.1 MGP_CASTEiJ_G0031355.1 mouse_genomes_project 7 52091370 52108395 + MGP_CASTEiJ_P0084322 Ube3a protein_coding protein_coding MGP_CASTEiJ_T0084323.1 MGP_CASTEiJ_G0031355.1 mouse_genomes_project 7 52106963 52108397 + Ube3a protein_coding retained_intron MGP_CASTEiJ_T0100034.1 MGP_CASTEiJ_G0036947.1 mouse_genomes_project 7 107056718 107056868 - Gm23345 snRNA snRNA MGP_CASTEiJ_T0083151.1 MGP_CASTEiJ_G0031074.1 mouse_genomes_project 7 23311226 23322485 - MGP_CASTEiJ_P0083151 Haus5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083152.1 MGP_CASTEiJ_G0031074.1 mouse_genomes_project 7 23311231 23322546 - MGP_CASTEiJ_P0083152 Haus5 protein_coding protein_coding MGP_CASTEiJ_T0083153.1 MGP_CASTEiJ_G0031074.1 mouse_genomes_project 7 23311453 23314536 - Haus5 protein_coding retained_intron MGP_CASTEiJ_T0083154.1 MGP_CASTEiJ_G0031074.1 mouse_genomes_project 7 23315092 23316498 - Haus5 protein_coding retained_intron MGP_CASTEiJ_T0083155.1 MGP_CASTEiJ_G0031074.1 mouse_genomes_project 7 23315620 23322512 - Haus5 protein_coding retained_intron MGP_CASTEiJ_T0083156.1 MGP_CASTEiJ_G0031074.1 mouse_genomes_project 7 23316382 23318398 - Haus5 protein_coding retained_intron MGP_CASTEiJ_T0084991.1 MGP_CASTEiJ_G0031497.1 mouse_genomes_project 7 80324298 80325380 - MGP_CASTEiJ_P0084991 Olfr310 protein_coding protein_coding MGP_CASTEiJ_T0085057.1 MGP_CASTEiJ_G0031530.1 mouse_genomes_project 7 84250214 84331344 + MGP_CASTEiJ_P0085057 Picalm protein_coding protein_coding MGP_CASTEiJ_T0085058.1 MGP_CASTEiJ_G0031530.1 mouse_genomes_project 7 84250555 84331347 + MGP_CASTEiJ_P0085058 Picalm protein_coding unknown_likely_coding MGP_CASTEiJ_T0082735.1 MGP_CASTEiJ_G0030980.1 mouse_genomes_project 7 20779271 20788317 - MGP_CASTEiJ_P0082735 Timm50 protein_coding protein_coding MGP_CASTEiJ_T0082736.1 MGP_CASTEiJ_G0030980.1 mouse_genomes_project 7 20779579 20780420 - Timm50 protein_coding retained_intron MGP_CASTEiJ_T0082737.1 MGP_CASTEiJ_G0030980.1 mouse_genomes_project 7 20780183 20781774 - Timm50 protein_coding retained_intron MGP_CASTEiJ_T0082738.1 MGP_CASTEiJ_G0030980.1 mouse_genomes_project 7 20783275 20788282 - Timm50 protein_coding retained_intron MGP_CASTEiJ_T0082739.1 MGP_CASTEiJ_G0030980.1 mouse_genomes_project 7 20783986 20788301 - Timm50 protein_coding retained_intron MGP_CASTEiJ_T0082740.1 MGP_CASTEiJ_G0030980.1 mouse_genomes_project 7 20787178 20788184 - Timm50 protein_coding processed_transcript MGP_CASTEiJ_T0087041.1 MGP_CASTEiJ_G0032091.1 mouse_genomes_project 7 123785857 123790568 + Kat8 protein_coding retained_intron MGP_CASTEiJ_T0087042.1 MGP_CASTEiJ_G0032091.1 mouse_genomes_project 7 123785857 123800353 + MGP_CASTEiJ_P0087042 Kat8 protein_coding protein_coding MGP_CASTEiJ_T0087043.1 MGP_CASTEiJ_G0032091.1 mouse_genomes_project 7 123787560 123795034 + MGP_CASTEiJ_P0087043 Kat8 protein_coding protein_coding MGP_CASTEiJ_T0087044.1 MGP_CASTEiJ_G0032091.1 mouse_genomes_project 7 123794310 123795102 + Kat8 protein_coding retained_intron MGP_CASTEiJ_T0085622.1 MGP_CASTEiJ_G0031688.1 mouse_genomes_project 7 98314699 98315647 - MGP_CASTEiJ_P0085622 Olfr610 protein_coding protein_coding MGP_CASTEiJ_T0002148.1 MGP_CASTEiJ_G0002068.1 mouse_genomes_project 7 31388127 31391122 + TEC TEC MGP_CASTEiJ_T0081637.1 MGP_CASTEiJ_G0030643.1 mouse_genomes_project 7 1972906 1986001 + MGP_CASTEiJ_P0081637 Zfp865 protein_coding protein_coding MGP_CASTEiJ_T0082360.1 MGP_CASTEiJ_G0030887.1 mouse_genomes_project 7 16990076 17007349 - MGP_CASTEiJ_P0082360 Cd177 protein_coding protein_coding MGP_CASTEiJ_T0082361.1 MGP_CASTEiJ_G0030887.1 mouse_genomes_project 7 16991220 16998256 - Cd177 protein_coding retained_intron MGP_CASTEiJ_T0005095.1 MGP_CASTEiJ_G0004342.1 mouse_genomes_project 7 73004183 73005368 + Gm44706 antisense antisense MGP_CASTEiJ_T0008806.1 MGP_CASTEiJ_G0007102.1 mouse_genomes_project 7 124730383 124876887 + Gm44671 lincRNA lincRNA MGP_CASTEiJ_T0083237.1 MGP_CASTEiJ_G0031093.1 mouse_genomes_project 7 23728367 23737376 - MGP_CASTEiJ_P0083237 Fxyd5 protein_coding protein_coding MGP_CASTEiJ_T0083238.1 MGP_CASTEiJ_G0031093.1 mouse_genomes_project 7 23728371 23738011 - MGP_CASTEiJ_P0083238 Fxyd5 protein_coding protein_coding MGP_CASTEiJ_T0083239.1 MGP_CASTEiJ_G0031093.1 mouse_genomes_project 7 23728375 23735954 - Fxyd5 protein_coding retained_intron MGP_CASTEiJ_T0083240.1 MGP_CASTEiJ_G0031093.1 mouse_genomes_project 7 23728375 23733529 - Fxyd5 protein_coding retained_intron MGP_CASTEiJ_T0083241.1 MGP_CASTEiJ_G0031093.1 mouse_genomes_project 7 23728375 23737655 - MGP_CASTEiJ_P0083241 Fxyd5 protein_coding protein_coding MGP_CASTEiJ_T0083242.1 MGP_CASTEiJ_G0031093.1 mouse_genomes_project 7 23728375 23734577 - MGP_CASTEiJ_P0083242 Fxyd5 protein_coding protein_coding MGP_CASTEiJ_T0083243.1 MGP_CASTEiJ_G0031093.1 mouse_genomes_project 7 23728378 23737615 - MGP_CASTEiJ_P0083243 Fxyd5 protein_coding protein_coding MGP_CASTEiJ_T0083244.1 MGP_CASTEiJ_G0031093.1 mouse_genomes_project 7 23728378 23737615 - MGP_CASTEiJ_P0083244 Fxyd5 protein_coding protein_coding MGP_CASTEiJ_T0083245.1 MGP_CASTEiJ_G0031093.1 mouse_genomes_project 7 23728408 23737683 - MGP_CASTEiJ_P0083245 Fxyd5 protein_coding protein_coding MGP_CASTEiJ_T0083246.1 MGP_CASTEiJ_G0031093.1 mouse_genomes_project 7 23728452 23737677 - MGP_CASTEiJ_P0083246 Fxyd5 protein_coding protein_coding MGP_CASTEiJ_T0083247.1 MGP_CASTEiJ_G0031093.1 mouse_genomes_project 7 23732095 23737653 - MGP_CASTEiJ_P0083247 Fxyd5 protein_coding protein_coding MGP_CASTEiJ_T0083248.1 MGP_CASTEiJ_G0031093.1 mouse_genomes_project 7 23732124 23737650 - MGP_CASTEiJ_P0083248 Fxyd5 protein_coding protein_coding MGP_CASTEiJ_T0083249.1 MGP_CASTEiJ_G0031093.1 mouse_genomes_project 7 23732126 23737624 - MGP_CASTEiJ_P0083249 Fxyd5 protein_coding protein_coding MGP_CASTEiJ_T0083250.1 MGP_CASTEiJ_G0031093.1 mouse_genomes_project 7 23736705 23737677 - Fxyd5 protein_coding retained_intron MGP_CASTEiJ_T0101241.1 MGP_CASTEiJ_G0038154.1 mouse_genomes_project 7 52150439 52150518 - Gm24966 snoRNA snoRNA MGP_CASTEiJ_T0085702.1 MGP_CASTEiJ_G0031748.1 mouse_genomes_project 7 99605862 99610520 - MGP_CASTEiJ_P0085702 protein_coding protein_coding MGP_CASTEiJ_T0087456.1 MGP_CASTEiJ_G0032179.1 mouse_genomes_project 7 136455628 136464928 - MGP_CASTEiJ_P0087456 protein_coding protein_coding MGP_CASTEiJ_T0087457.1 MGP_CASTEiJ_G0032179.1 mouse_genomes_project 7 136455628 136554385 - MGP_CASTEiJ_P0087457 protein_coding protein_coding MGP_CASTEiJ_T0087458.1 MGP_CASTEiJ_G0032179.1 mouse_genomes_project 7 136455628 136476733 - MGP_CASTEiJ_P0087458 protein_coding protein_coding MGP_CASTEiJ_T0087459.1 MGP_CASTEiJ_G0032179.1 mouse_genomes_project 7 136455757 136476713 - protein_coding retained_intron MGP_CASTEiJ_T0087460.1 MGP_CASTEiJ_G0032179.1 mouse_genomes_project 7 136455835 136554338 - MGP_CASTEiJ_P0087460 protein_coding unknown_likely_coding MGP_CASTEiJ_T0087461.1 MGP_CASTEiJ_G0032179.1 mouse_genomes_project 7 136472277 136476733 - protein_coding retained_intron MGP_CASTEiJ_T0087462.1 MGP_CASTEiJ_G0032179.1 mouse_genomes_project 7 136500631 136527375 - MGP_CASTEiJ_P0087462 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087463.1 MGP_CASTEiJ_G0032179.1 mouse_genomes_project 7 136500631 136554385 - MGP_CASTEiJ_P0087463 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087464.1 MGP_CASTEiJ_G0032179.1 mouse_genomes_project 7 136507743 136554385 - protein_coding retained_intron MGP_CASTEiJ_T0087465.1 MGP_CASTEiJ_G0032179.1 mouse_genomes_project 7 136545737 136554385 - MGP_CASTEiJ_P0087465 protein_coding protein_coding MGP_CASTEiJ_T0087466.1 MGP_CASTEiJ_G0032179.1 mouse_genomes_project 7 136548854 136554385 - protein_coding retained_intron MGP_CASTEiJ_T0015297.1 MGP_CASTEiJ_G0013460.1 mouse_genomes_project 7 109936065 109937192 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084239.1 MGP_CASTEiJ_G0031343.1 mouse_genomes_project 7 47730385 48114067 + Luzp2 protein_coding retained_intron MGP_CASTEiJ_T0084240.1 MGP_CASTEiJ_G0031343.1 mouse_genomes_project 7 47730502 48134185 + MGP_CASTEiJ_P0084240 Luzp2 protein_coding protein_coding MGP_CASTEiJ_T0085565.1 MGP_CASTEiJ_G0031635.1 mouse_genomes_project 7 97206737 97237143 + MGP_CASTEiJ_P0085565 Rrm1 protein_coding protein_coding MGP_CASTEiJ_T0015161.1 MGP_CASTEiJ_G0013324.1 mouse_genomes_project 7 17770337 17771649 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008729.1 MGP_CASTEiJ_G0007051.1 mouse_genomes_project 7 77711644 77764574 + Gm26708 lincRNA lincRNA MGP_CASTEiJ_T0015183.1 MGP_CASTEiJ_G0013346.1 mouse_genomes_project 7 25608066 25608482 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015114.1 MGP_CASTEiJ_G0013277.1 mouse_genomes_project 7 1083894 1084048 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002175.1 MGP_CASTEiJ_G0002095.1 mouse_genomes_project 7 57076314 57076788 + TEC TEC MGP_CASTEiJ_T0102598.1 MGP_CASTEiJ_G0039322.1 mouse_genomes_project 7 100166553 100187401 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0082201.1 MGP_CASTEiJ_G0030838.1 mouse_genomes_project 7 14528225 14531266 - MGP_CASTEiJ_P0082201 Apoe protein_coding protein_coding MGP_CASTEiJ_T0082202.1 MGP_CASTEiJ_G0030838.1 mouse_genomes_project 7 14528382 14531152 - MGP_CASTEiJ_P0082202 Apoe protein_coding protein_coding MGP_CASTEiJ_T0082203.1 MGP_CASTEiJ_G0030838.1 mouse_genomes_project 7 14528387 14531108 - MGP_CASTEiJ_P0082203 Apoe protein_coding protein_coding MGP_CASTEiJ_T0082204.1 MGP_CASTEiJ_G0030838.1 mouse_genomes_project 7 14528387 14530507 - MGP_CASTEiJ_P0082204 Apoe protein_coding protein_coding MGP_CASTEiJ_T0082205.1 MGP_CASTEiJ_G0030838.1 mouse_genomes_project 7 14528387 14531152 - MGP_CASTEiJ_P0082205 Apoe protein_coding protein_coding MGP_CASTEiJ_T0082206.1 MGP_CASTEiJ_G0030838.1 mouse_genomes_project 7 14528735 14531138 - MGP_CASTEiJ_P0082206 Apoe protein_coding protein_coding MGP_CASTEiJ_T0082207.1 MGP_CASTEiJ_G0030838.1 mouse_genomes_project 7 14528736 14530721 - MGP_CASTEiJ_P0082207 Apoe protein_coding protein_coding MGP_CASTEiJ_T0082208.1 MGP_CASTEiJ_G0030838.1 mouse_genomes_project 7 14528959 14530347 - MGP_CASTEiJ_P0082208 Apoe protein_coding protein_coding MGP_CASTEiJ_T0082209.1 MGP_CASTEiJ_G0030838.1 mouse_genomes_project 7 14529355 14531150 - MGP_CASTEiJ_P0082209 Apoe protein_coding protein_coding MGP_CASTEiJ_T0082210.1 MGP_CASTEiJ_G0030838.1 mouse_genomes_project 7 14529371 14530367 - MGP_CASTEiJ_P0082210 Apoe protein_coding protein_coding MGP_CASTEiJ_T0102500.1 MGP_CASTEiJ_G0039224.1 mouse_genomes_project 7 23979071 23979458 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101234.1 MGP_CASTEiJ_G0038147.1 mouse_genomes_project 7 37608978 37609048 - Snord34 snoRNA snoRNA MGP_CASTEiJ_T0002177.1 MGP_CASTEiJ_G0002097.1 mouse_genomes_project 7 65593056 65593555 + TEC TEC MGP_CASTEiJ_T0002173.1 MGP_CASTEiJ_G0002093.1 mouse_genomes_project 7 56853745 56857407 - TEC TEC MGP_CASTEiJ_T0087617.1 MGP_CASTEiJ_G0032238.1 mouse_genomes_project 7 138059960 138083110 - MGP_CASTEiJ_P0087617 Ano9 protein_coding protein_coding MGP_CASTEiJ_T0085593.1 MGP_CASTEiJ_G0031661.1 mouse_genomes_project 7 97706118 97707075 + MGP_CASTEiJ_P0085593 Olfr572 protein_coding protein_coding MGP_CASTEiJ_T0083932.1 MGP_CASTEiJ_G0031257.1 mouse_genomes_project 7 37955434 37995555 + MGP_CASTEiJ_P0083932 Gys1 protein_coding protein_coding MGP_CASTEiJ_T0083933.1 MGP_CASTEiJ_G0031257.1 mouse_genomes_project 7 37955467 37994753 + MGP_CASTEiJ_P0083933 Gys1 protein_coding protein_coding MGP_CASTEiJ_T0083934.1 MGP_CASTEiJ_G0031257.1 mouse_genomes_project 7 37983810 37990741 + Gys1 protein_coding processed_transcript MGP_CASTEiJ_T0083935.1 MGP_CASTEiJ_G0031257.1 mouse_genomes_project 7 37983936 37990765 + Gys1 protein_coding processed_transcript MGP_CASTEiJ_T0083936.1 MGP_CASTEiJ_G0031257.1 mouse_genomes_project 7 37984459 37994238 + Gys1 protein_coding retained_intron MGP_CASTEiJ_T0083937.1 MGP_CASTEiJ_G0031257.1 mouse_genomes_project 7 37990045 37991030 + Gys1 protein_coding retained_intron MGP_CASTEiJ_T0085039.1 MGP_CASTEiJ_G0031524.1 mouse_genomes_project 7 83756217 83757227 - MGP_CASTEiJ_P0085039 protein_coding protein_coding MGP_CASTEiJ_T0083945.1 MGP_CASTEiJ_G0031261.1 mouse_genomes_project 7 38029631 38068026 + MGP_CASTEiJ_P0083945 Tulp2 protein_coding protein_coding MGP_CASTEiJ_T0083946.1 MGP_CASTEiJ_G0031261.1 mouse_genomes_project 7 38029632 38067473 + MGP_CASTEiJ_P0083946 Tulp2 protein_coding protein_coding MGP_CASTEiJ_T0083947.1 MGP_CASTEiJ_G0031261.1 mouse_genomes_project 7 38029733 38067475 + MGP_CASTEiJ_P0083947 Tulp2 protein_coding protein_coding MGP_CASTEiJ_T0083957.1 MGP_CASTEiJ_G0031261.1 mouse_genomes_project 7 38058935 38067687 + MGP_CASTEiJ_P0083957 Tulp2 protein_coding protein_coding MGP_CASTEiJ_T0083958.1 MGP_CASTEiJ_G0031261.1 mouse_genomes_project 7 38058953 38067480 + MGP_CASTEiJ_P0083958 Tulp2 protein_coding protein_coding MGP_CASTEiJ_T0083959.1 MGP_CASTEiJ_G0031261.1 mouse_genomes_project 7 38059801 38061908 + MGP_CASTEiJ_P0083959 Tulp2 protein_coding protein_coding MGP_CASTEiJ_T0083960.1 MGP_CASTEiJ_G0031261.1 mouse_genomes_project 7 38059822 38067475 + MGP_CASTEiJ_P0083960 Tulp2 protein_coding protein_coding MGP_CASTEiJ_T0083961.1 MGP_CASTEiJ_G0031261.1 mouse_genomes_project 7 38059826 38063166 + MGP_CASTEiJ_P0083961 Tulp2 protein_coding protein_coding MGP_CASTEiJ_T0083962.1 MGP_CASTEiJ_G0031261.1 mouse_genomes_project 7 38059857 38068731 + MGP_CASTEiJ_P0083962 Tulp2 protein_coding protein_coding MGP_CASTEiJ_T0083963.1 MGP_CASTEiJ_G0031261.1 mouse_genomes_project 7 38061028 38061541 + Tulp2 protein_coding processed_transcript MGP_CASTEiJ_T0005002.1 MGP_CASTEiJ_G0004276.1 mouse_genomes_project 7 1023840 1035893 - D030047H15Rik antisense antisense MGP_CASTEiJ_T0008576.1 MGP_CASTEiJ_G0006940.1 mouse_genomes_project 7 8090790 8093415 + Gm29638 lincRNA lincRNA MGP_CASTEiJ_T0081760.1 MGP_CASTEiJ_G0030711.1 mouse_genomes_project 7 7949481 7967413 + MGP_CASTEiJ_P0081760 Zfp110 protein_coding protein_coding MGP_CASTEiJ_T0081761.1 MGP_CASTEiJ_G0030711.1 mouse_genomes_project 7 7949536 7952843 + Zfp110 protein_coding processed_transcript MGP_CASTEiJ_T0081762.1 MGP_CASTEiJ_G0030711.1 mouse_genomes_project 7 7949757 7953435 + Zfp110 protein_coding retained_intron MGP_CASTEiJ_T0081763.1 MGP_CASTEiJ_G0030711.1 mouse_genomes_project 7 7953039 7961683 + Zfp110 protein_coding processed_transcript MGP_CASTEiJ_T0015141.1 MGP_CASTEiJ_G0013304.1 mouse_genomes_project 7 11359820 11359935 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083823.1 MGP_CASTEiJ_G0031222.1 mouse_genomes_project 7 37401880 37420857 + MGP_CASTEiJ_P0083823 Tsks protein_coding protein_coding MGP_CASTEiJ_T0083824.1 MGP_CASTEiJ_G0031222.1 mouse_genomes_project 7 37401880 37420857 + MGP_CASTEiJ_P0083824 Tsks protein_coding protein_coding MGP_CASTEiJ_T0081860.1 MGP_CASTEiJ_G0030739.1 mouse_genomes_project 7 9430213 9460897 - MGP_CASTEiJ_P0081860 Sult2a7 protein_coding protein_coding MGP_CASTEiJ_T0081861.1 MGP_CASTEiJ_G0030739.1 mouse_genomes_project 7 9430290 9461579 - MGP_CASTEiJ_P0081861 Sult2a7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082015.1 MGP_CASTEiJ_G0030781.1 mouse_genomes_project 7 11868379 11899089 + MGP_CASTEiJ_P0082015 Psg16 protein_coding protein_coding MGP_CASTEiJ_T0082016.1 MGP_CASTEiJ_G0030781.1 mouse_genomes_project 7 11868456 11889744 + Psg16 protein_coding retained_intron MGP_CASTEiJ_T0082017.1 MGP_CASTEiJ_G0030781.1 mouse_genomes_project 7 11882218 11888233 + MGP_CASTEiJ_P0082017 Psg16 protein_coding protein_coding MGP_CASTEiJ_T0085664.1 MGP_CASTEiJ_G0031730.1 mouse_genomes_project 7 99087736 99095842 - MGP_CASTEiJ_P0085664 Olfm5 protein_coding protein_coding MGP_CASTEiJ_T0085665.1 MGP_CASTEiJ_G0031730.1 mouse_genomes_project 7 99088795 99095823 - MGP_CASTEiJ_P0085665 Olfm5 protein_coding protein_coding MGP_CASTEiJ_T0084983.1 MGP_CASTEiJ_G0031490.1 mouse_genomes_project 7 78203449 78263818 - MGP_CASTEiJ_P0084983 Zfand6 protein_coding protein_coding MGP_CASTEiJ_T0084984.1 MGP_CASTEiJ_G0031490.1 mouse_genomes_project 7 78203449 78263828 - MGP_CASTEiJ_P0084984 Zfand6 protein_coding protein_coding MGP_CASTEiJ_T0102587.1 MGP_CASTEiJ_G0039311.1 mouse_genomes_project 7 98454435 98567395 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0086722.1 MGP_CASTEiJ_G0032028.1 mouse_genomes_project 7 122581786 122615102 + MGP_CASTEiJ_P0086722 Fam57b protein_coding protein_coding MGP_CASTEiJ_T0086723.1 MGP_CASTEiJ_G0032028.1 mouse_genomes_project 7 122596586 122606896 + Fam57b protein_coding processed_transcript MGP_CASTEiJ_T0086724.1 MGP_CASTEiJ_G0032028.1 mouse_genomes_project 7 122597957 122602295 + Fam57b protein_coding processed_transcript MGP_CASTEiJ_T0086725.1 MGP_CASTEiJ_G0032028.1 mouse_genomes_project 7 122601949 122612420 + MGP_CASTEiJ_P0086725 Fam57b protein_coding protein_coding MGP_CASTEiJ_T0086726.1 MGP_CASTEiJ_G0032028.1 mouse_genomes_project 7 122601950 122615106 + MGP_CASTEiJ_P0086726 Fam57b protein_coding protein_coding MGP_CASTEiJ_T0086727.1 MGP_CASTEiJ_G0032028.1 mouse_genomes_project 7 122608981 122615104 + MGP_CASTEiJ_P0086727 Fam57b protein_coding protein_coding MGP_CASTEiJ_T0081699.1 MGP_CASTEiJ_G0030672.1 mouse_genomes_project 7 3428941 3429894 + MGP_CASTEiJ_P0081699 protein_coding protein_coding MGP_CASTEiJ_T0015272.1 MGP_CASTEiJ_G0013435.1 mouse_genomes_project 7 92010556 92011264 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017652.1 MGP_CASTEiJ_G0014997.1 mouse_genomes_project 7 92623862 92627404 + Gm16938 processed_transcript processed_transcript MGP_CASTEiJ_T0017653.1 MGP_CASTEiJ_G0014997.1 mouse_genomes_project 7 92623909 92627404 + Gm16938 processed_transcript processed_transcript MGP_CASTEiJ_T0082846.1 MGP_CASTEiJ_G0031006.1 mouse_genomes_project 7 21443523 21516349 - MGP_CASTEiJ_P0082846 Actn4 protein_coding protein_coding MGP_CASTEiJ_T0082847.1 MGP_CASTEiJ_G0031006.1 mouse_genomes_project 7 21443524 21516192 - MGP_CASTEiJ_P0082847 Actn4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082848.1 MGP_CASTEiJ_G0031006.1 mouse_genomes_project 7 21443524 21516192 - MGP_CASTEiJ_P0082848 Actn4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082849.1 MGP_CASTEiJ_G0031006.1 mouse_genomes_project 7 21443932 21458018 - Actn4 protein_coding processed_transcript MGP_CASTEiJ_T0082850.1 MGP_CASTEiJ_G0031006.1 mouse_genomes_project 7 21444307 21516223 - MGP_CASTEiJ_P0082850 Actn4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082851.1 MGP_CASTEiJ_G0031006.1 mouse_genomes_project 7 21444537 21445158 - Actn4 protein_coding retained_intron MGP_CASTEiJ_T0082852.1 MGP_CASTEiJ_G0031006.1 mouse_genomes_project 7 21445947 21447328 - Actn4 protein_coding retained_intron MGP_CASTEiJ_T0082853.1 MGP_CASTEiJ_G0031006.1 mouse_genomes_project 7 21448906 21516232 - MGP_CASTEiJ_P0082853 Actn4 protein_coding protein_coding MGP_CASTEiJ_T0082854.1 MGP_CASTEiJ_G0031006.1 mouse_genomes_project 7 21452221 21458308 - Actn4 protein_coding processed_transcript MGP_CASTEiJ_T0082855.1 MGP_CASTEiJ_G0031006.1 mouse_genomes_project 7 21457645 21469752 - MGP_CASTEiJ_P0082855 Actn4 protein_coding protein_coding MGP_CASTEiJ_T0082856.1 MGP_CASTEiJ_G0031006.1 mouse_genomes_project 7 21463926 21501460 - MGP_CASTEiJ_P0082856 Actn4 protein_coding protein_coding MGP_CASTEiJ_T0086005.1 MGP_CASTEiJ_G0031886.1 mouse_genomes_project 7 105862151 105863319 - Rnf141 protein_coding retained_intron MGP_CASTEiJ_T0086006.1 MGP_CASTEiJ_G0031886.1 mouse_genomes_project 7 105862333 105884738 - MGP_CASTEiJ_P0086006 Rnf141 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086007.1 MGP_CASTEiJ_G0031886.1 mouse_genomes_project 7 105875152 105907255 - MGP_CASTEiJ_P0086007 Rnf141 protein_coding protein_coding MGP_CASTEiJ_T0086008.1 MGP_CASTEiJ_G0031886.1 mouse_genomes_project 7 105877209 105907179 - MGP_CASTEiJ_P0086008 Rnf141 protein_coding protein_coding MGP_CASTEiJ_T0086009.1 MGP_CASTEiJ_G0031886.1 mouse_genomes_project 7 105878217 105885009 - Rnf141 protein_coding retained_intron MGP_CASTEiJ_T0086010.1 MGP_CASTEiJ_G0031886.1 mouse_genomes_project 7 105878262 105884767 - MGP_CASTEiJ_P0086010 Rnf141 protein_coding protein_coding MGP_CASTEiJ_T0086011.1 MGP_CASTEiJ_G0031886.1 mouse_genomes_project 7 105897069 105906986 - MGP_CASTEiJ_P0086011 Rnf141 protein_coding protein_coding MGP_CASTEiJ_T0081997.1 MGP_CASTEiJ_G0030776.1 mouse_genomes_project 7 11729472 11733627 + MGP_CASTEiJ_P0081997 Pnmal2 protein_coding protein_coding MGP_CASTEiJ_T0017620.1 MGP_CASTEiJ_G0014987.1 mouse_genomes_project 7 48790984 48791907 + Gm15888 processed_transcript processed_transcript MGP_CASTEiJ_T0081820.1 MGP_CASTEiJ_G0030727.1 mouse_genomes_project 7 8358819 8359770 + MGP_CASTEiJ_P0081820 Vmn1r89 protein_coding protein_coding MGP_CASTEiJ_T0081444.1 MGP_CASTEiJ_G0030603.1 mouse_genomes_project 7 909300 991713 - MGP_CASTEiJ_P0081444 Lair1 protein_coding protein_coding MGP_CASTEiJ_T0081445.1 MGP_CASTEiJ_G0030603.1 mouse_genomes_project 7 912930 991738 - MGP_CASTEiJ_P0081445 Lair1 protein_coding protein_coding MGP_CASTEiJ_T0081446.1 MGP_CASTEiJ_G0030603.1 mouse_genomes_project 7 913915 991708 - MGP_CASTEiJ_P0081446 Lair1 protein_coding protein_coding MGP_CASTEiJ_T0081447.1 MGP_CASTEiJ_G0030603.1 mouse_genomes_project 7 914854 991695 - MGP_CASTEiJ_P0081447 Lair1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081448.1 MGP_CASTEiJ_G0030603.1 mouse_genomes_project 7 914881 991673 - MGP_CASTEiJ_P0081448 Lair1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081449.1 MGP_CASTEiJ_G0030603.1 mouse_genomes_project 7 915041 930812 - Lair1 protein_coding processed_transcript MGP_CASTEiJ_T0081450.1 MGP_CASTEiJ_G0030603.1 mouse_genomes_project 7 915447 991650 - MGP_CASTEiJ_P0081450 Lair1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081451.1 MGP_CASTEiJ_G0030603.1 mouse_genomes_project 7 915537 991675 - MGP_CASTEiJ_P0081451 Lair1 protein_coding protein_coding MGP_CASTEiJ_T0081452.1 MGP_CASTEiJ_G0030603.1 mouse_genomes_project 7 915537 991675 - MGP_CASTEiJ_P0081452 Lair1 protein_coding protein_coding MGP_CASTEiJ_T0081453.1 MGP_CASTEiJ_G0030603.1 mouse_genomes_project 7 930966 991682 - Lair1 protein_coding processed_transcript MGP_CASTEiJ_T0082608.1 MGP_CASTEiJ_G0030945.1 mouse_genomes_project 7 19598487 19625260 + MGP_CASTEiJ_P0082608 Coq8b protein_coding protein_coding MGP_CASTEiJ_T0082609.1 MGP_CASTEiJ_G0030945.1 mouse_genomes_project 7 19598677 19625254 + MGP_CASTEiJ_P0082609 Coq8b protein_coding protein_coding MGP_CASTEiJ_T0082610.1 MGP_CASTEiJ_G0030945.1 mouse_genomes_project 7 19598827 19625255 + MGP_CASTEiJ_P0082610 Coq8b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082611.1 MGP_CASTEiJ_G0030945.1 mouse_genomes_project 7 19605877 19609760 + Coq8b protein_coding processed_transcript MGP_CASTEiJ_T0082612.1 MGP_CASTEiJ_G0030945.1 mouse_genomes_project 7 19606138 19609039 + Coq8b protein_coding retained_intron MGP_CASTEiJ_T0082613.1 MGP_CASTEiJ_G0030945.1 mouse_genomes_project 7 19617455 19625253 + Coq8b protein_coding retained_intron MGP_CASTEiJ_T0082614.1 MGP_CASTEiJ_G0030945.1 mouse_genomes_project 7 19617657 19624716 + Coq8b protein_coding processed_transcript MGP_CASTEiJ_T0081428.1 MGP_CASTEiJ_G0030601.1 mouse_genomes_project 7 576203 578242 + MGP_CASTEiJ_P0081428 protein_coding protein_coding MGP_CASTEiJ_T0081429.1 MGP_CASTEiJ_G0030601.1 mouse_genomes_project 7 576920 578622 + MGP_CASTEiJ_P0081429 protein_coding protein_coding MGP_CASTEiJ_T0081430.1 MGP_CASTEiJ_G0030601.1 mouse_genomes_project 7 577119 579061 + protein_coding retained_intron MGP_CASTEiJ_T0081431.1 MGP_CASTEiJ_G0030601.1 mouse_genomes_project 7 577147 578645 + MGP_CASTEiJ_P0081431 protein_coding protein_coding MGP_CASTEiJ_T0081432.1 MGP_CASTEiJ_G0030601.1 mouse_genomes_project 7 577620 578529 + MGP_CASTEiJ_P0081432 protein_coding protein_coding MGP_CASTEiJ_T0081433.1 MGP_CASTEiJ_G0030601.1 mouse_genomes_project 7 577943 583955 + MGP_CASTEiJ_P0081433 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081434.1 MGP_CASTEiJ_G0030601.1 mouse_genomes_project 7 578624 583955 + MGP_CASTEiJ_P0081434 protein_coding protein_coding MGP_CASTEiJ_T0085717.1 MGP_CASTEiJ_G0031763.1 mouse_genomes_project 7 100126044 100131017 + MGP_CASTEiJ_P0085717 protein_coding protein_coding MGP_CASTEiJ_T0002227.1 MGP_CASTEiJ_G0002146.1 mouse_genomes_project 7 118123130 118125843 + TEC TEC MGP_CASTEiJ_T0081659.1 MGP_CASTEiJ_G0030657.1 mouse_genomes_project 7 2748235 2749198 - MGP_CASTEiJ_P0081659 Vmn1r64 protein_coding protein_coding MGP_CASTEiJ_T0083764.1 MGP_CASTEiJ_G0031212.1 mouse_genomes_project 7 37197448 37226690 + MGP_CASTEiJ_P0083764 Vrk3 protein_coding protein_coding MGP_CASTEiJ_T0083765.1 MGP_CASTEiJ_G0031212.1 mouse_genomes_project 7 37197520 37207139 + Vrk3 protein_coding retained_intron MGP_CASTEiJ_T0083766.1 MGP_CASTEiJ_G0031212.1 mouse_genomes_project 7 37197619 37208778 + MGP_CASTEiJ_P0083766 Vrk3 protein_coding protein_coding MGP_CASTEiJ_T0083767.1 MGP_CASTEiJ_G0031212.1 mouse_genomes_project 7 37197671 37226690 + MGP_CASTEiJ_P0083767 Vrk3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083768.1 MGP_CASTEiJ_G0031212.1 mouse_genomes_project 7 37197681 37212086 + MGP_CASTEiJ_P0083768 Vrk3 protein_coding protein_coding MGP_CASTEiJ_T0083769.1 MGP_CASTEiJ_G0031212.1 mouse_genomes_project 7 37197682 37213899 + MGP_CASTEiJ_P0083769 Vrk3 protein_coding protein_coding MGP_CASTEiJ_T0083770.1 MGP_CASTEiJ_G0031212.1 mouse_genomes_project 7 37197978 37202985 + MGP_CASTEiJ_P0083770 Vrk3 protein_coding protein_coding MGP_CASTEiJ_T0083771.1 MGP_CASTEiJ_G0031212.1 mouse_genomes_project 7 37201140 37208417 + Vrk3 protein_coding processed_transcript MGP_CASTEiJ_T0083772.1 MGP_CASTEiJ_G0031212.1 mouse_genomes_project 7 37201142 37208417 + Vrk3 protein_coding processed_transcript MGP_CASTEiJ_T0102482.1 MGP_CASTEiJ_G0039207.1 mouse_genomes_project 7 9598382 9598592 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015326.1 MGP_CASTEiJ_G0013489.1 mouse_genomes_project 7 125002968 125003726 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083657.1 MGP_CASTEiJ_G0031191.1 mouse_genomes_project 7 36641788 36648051 - MGP_CASTEiJ_P0083657 Acpt protein_coding protein_coding MGP_CASTEiJ_T0083658.1 MGP_CASTEiJ_G0031191.1 mouse_genomes_project 7 36643715 36648051 - MGP_CASTEiJ_P0083658 Acpt protein_coding protein_coding MGP_CASTEiJ_T0083659.1 MGP_CASTEiJ_G0031191.1 mouse_genomes_project 7 36643722 36647878 - MGP_CASTEiJ_P0083659 Acpt protein_coding protein_coding MGP_CASTEiJ_T0101251.1 MGP_CASTEiJ_G0038164.1 mouse_genomes_project 7 61713642 61713779 - Gm23795 snoRNA snoRNA MGP_CASTEiJ_T0083196.1 MGP_CASTEiJ_G0031085.1 mouse_genomes_project 7 23536432 23544987 - MGP_CASTEiJ_P0083196 Ffar1 protein_coding protein_coding MGP_CASTEiJ_T0015130.1 MGP_CASTEiJ_G0013293.1 mouse_genomes_project 7 8564794 8565610 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102470.1 MGP_CASTEiJ_G0039195.1 mouse_genomes_project 7 9314285 9314858 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0083319.1 MGP_CASTEiJ_G0031108.1 mouse_genomes_project 7 25203010 25204409 + MGP_CASTEiJ_P0083319 Scgb1b27 protein_coding protein_coding MGP_CASTEiJ_T0083320.1 MGP_CASTEiJ_G0031108.1 mouse_genomes_project 7 25203094 25203977 + MGP_CASTEiJ_P0083320 Scgb1b27 protein_coding protein_coding MGP_CASTEiJ_T0002206.1 MGP_CASTEiJ_G0002125.1 mouse_genomes_project 7 72854226 72857182 - TEC TEC MGP_CASTEiJ_T0002124.1 MGP_CASTEiJ_G0002044.1 mouse_genomes_project 7 411304 413560 - TEC TEC MGP_CASTEiJ_T0098652.1 MGP_CASTEiJ_G0035583.1 mouse_genomes_project 7 124708224 124708342 - n-R5s158 rRNA rRNA MGP_CASTEiJ_T0084348.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56713255 56838655 + MGP_CASTEiJ_P0084348 Trpm1 protein_coding protein_coding MGP_CASTEiJ_T0084349.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56713265 56795268 + MGP_CASTEiJ_P0084349 Trpm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084350.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56713265 56837979 + MGP_CASTEiJ_P0084350 Trpm1 protein_coding protein_coding MGP_CASTEiJ_T0084351.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56713348 56837979 + MGP_CASTEiJ_P0084351 Trpm1 protein_coding protein_coding MGP_CASTEiJ_T0084352.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56752815 56778426 + Trpm1 protein_coding retained_intron MGP_CASTEiJ_T0084353.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56752893 56766630 + Trpm1 protein_coding processed_transcript MGP_CASTEiJ_T0084354.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56752893 56793358 + MGP_CASTEiJ_P0084354 Trpm1 protein_coding protein_coding MGP_CASTEiJ_T0084355.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56752984 56793286 + Trpm1 protein_coding retained_intron MGP_CASTEiJ_T0084356.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56752986 56838628 + MGP_CASTEiJ_P0084356 Trpm1 protein_coding protein_coding MGP_CASTEiJ_T0084357.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56752989 56787277 + MGP_CASTEiJ_P0084357 Trpm1 protein_coding protein_coding MGP_CASTEiJ_T0084358.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56753018 56787277 + MGP_CASTEiJ_P0084358 Trpm1 protein_coding protein_coding MGP_CASTEiJ_T0084359.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56753035 56769088 + MGP_CASTEiJ_P0084359 Trpm1 protein_coding protein_coding MGP_CASTEiJ_T0084360.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56766608 56769231 + MGP_CASTEiJ_P0084360 Trpm1 protein_coding protein_coding MGP_CASTEiJ_T0084361.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56770214 56777901 + Trpm1 protein_coding processed_transcript MGP_CASTEiJ_T0084362.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56770214 56775349 + MGP_CASTEiJ_P0084362 Trpm1 protein_coding protein_coding MGP_CASTEiJ_T0084363.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56777040 56788899 + Trpm1 protein_coding retained_intron MGP_CASTEiJ_T0084364.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56777920 56792283 + MGP_CASTEiJ_P0084364 Trpm1 protein_coding protein_coding MGP_CASTEiJ_T0084365.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56788416 56791746 + Trpm1 protein_coding retained_intron MGP_CASTEiJ_T0084366.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56795110 56811177 + Trpm1 protein_coding retained_intron MGP_CASTEiJ_T0084367.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56795476 56799798 + Trpm1 protein_coding processed_transcript MGP_CASTEiJ_T0084368.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56813488 56836987 + Trpm1 protein_coding retained_intron MGP_CASTEiJ_T0084369.1 MGP_CASTEiJ_G0031367.1 mouse_genomes_project 7 56813701 56836867 + MGP_CASTEiJ_P0084369 Trpm1 protein_coding protein_coding MGP_CASTEiJ_T0083327.1 MGP_CASTEiJ_G0031111.1 mouse_genomes_project 7 25343818 25382920 - MGP_CASTEiJ_P0083327 Uba2 protein_coding protein_coding MGP_CASTEiJ_T0083328.1 MGP_CASTEiJ_G0031111.1 mouse_genomes_project 7 25343844 25345217 - Uba2 protein_coding retained_intron MGP_CASTEiJ_T0083329.1 MGP_CASTEiJ_G0031111.1 mouse_genomes_project 7 25344213 25347674 - MGP_CASTEiJ_P0083329 Uba2 protein_coding protein_coding MGP_CASTEiJ_T0083330.1 MGP_CASTEiJ_G0031111.1 mouse_genomes_project 7 25344520 25346398 - Uba2 protein_coding retained_intron MGP_CASTEiJ_T0083331.1 MGP_CASTEiJ_G0031111.1 mouse_genomes_project 7 25345559 25349396 - Uba2 protein_coding retained_intron MGP_CASTEiJ_T0083332.1 MGP_CASTEiJ_G0031111.1 mouse_genomes_project 7 25357650 25373632 - MGP_CASTEiJ_P0083332 Uba2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083333.1 MGP_CASTEiJ_G0031111.1 mouse_genomes_project 7 25360901 25367448 - Uba2 protein_coding retained_intron MGP_CASTEiJ_T0083334.1 MGP_CASTEiJ_G0031111.1 mouse_genomes_project 7 25361483 25378087 - MGP_CASTEiJ_P0083334 Uba2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083335.1 MGP_CASTEiJ_G0031111.1 mouse_genomes_project 7 25373578 25383947 - MGP_CASTEiJ_P0083335 Uba2 protein_coding protein_coding MGP_CASTEiJ_T0083336.1 MGP_CASTEiJ_G0031111.1 mouse_genomes_project 7 25376802 25378017 - Uba2 protein_coding retained_intron MGP_CASTEiJ_T0005020.1 MGP_CASTEiJ_G0004286.1 mouse_genomes_project 7 14558225 14564925 + Gm20512 antisense antisense MGP_CASTEiJ_T0085071.1 MGP_CASTEiJ_G0031534.1 mouse_genomes_project 7 84574797 84578174 + MGP_CASTEiJ_P0085071 Crebzf protein_coding protein_coding MGP_CASTEiJ_T0085072.1 MGP_CASTEiJ_G0031534.1 mouse_genomes_project 7 84574849 84579788 + MGP_CASTEiJ_P0085072 Crebzf protein_coding protein_coding MGP_CASTEiJ_T0085073.1 MGP_CASTEiJ_G0031534.1 mouse_genomes_project 7 84575738 84576771 + Crebzf protein_coding processed_transcript MGP_CASTEiJ_T0085074.1 MGP_CASTEiJ_G0031534.1 mouse_genomes_project 7 84575738 84576446 + MGP_CASTEiJ_P0085074 Crebzf protein_coding protein_coding MGP_CASTEiJ_T0085075.1 MGP_CASTEiJ_G0031534.1 mouse_genomes_project 7 84575910 84578060 + Crebzf protein_coding processed_transcript MGP_CASTEiJ_T0081984.1 MGP_CASTEiJ_G0030772.1 mouse_genomes_project 7 11652254 11668146 + MGP_CASTEiJ_P0081984 Dact3 protein_coding protein_coding MGP_CASTEiJ_T0098651.1 MGP_CASTEiJ_G0035582.1 mouse_genomes_project 7 111957216 111957337 - n-R5s157 rRNA rRNA MGP_CASTEiJ_T0081852.1 MGP_CASTEiJ_G0030734.1 mouse_genomes_project 7 9071040 9111803 - MGP_CASTEiJ_P0081852 Sult2a3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0102540.1 MGP_CASTEiJ_G0039264.1 mouse_genomes_project 7 40887882 40888816 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0098401.1 MGP_CASTEiJ_G0035332.1 mouse_genomes_project 7 108114162 108115589 + pseudogene pseudogene MGP_CASTEiJ_T0008663.1 MGP_CASTEiJ_G0007010.1 mouse_genomes_project 7 60956379 61053636 + lincRNA lincRNA MGP_CASTEiJ_T0008664.1 MGP_CASTEiJ_G0007010.1 mouse_genomes_project 7 60958511 61044202 + lincRNA lincRNA MGP_CASTEiJ_T0008665.1 MGP_CASTEiJ_G0007010.1 mouse_genomes_project 7 60985170 61053634 + lincRNA lincRNA MGP_CASTEiJ_T0008666.1 MGP_CASTEiJ_G0007010.1 mouse_genomes_project 7 61020422 61044281 + lincRNA lincRNA MGP_CASTEiJ_T0087080.1 MGP_CASTEiJ_G0032098.1 mouse_genomes_project 7 123945894 124011309 + MGP_CASTEiJ_P0087080 Itgam protein_coding protein_coding MGP_CASTEiJ_T0087083.1 MGP_CASTEiJ_G0032098.1 mouse_genomes_project 7 124002456 124010351 + MGP_CASTEiJ_P0087083 Itgam protein_coding protein_coding MGP_CASTEiJ_T0015219.1 MGP_CASTEiJ_G0013382.1 mouse_genomes_project 7 48105157 48106966 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085890.1 MGP_CASTEiJ_G0031842.1 mouse_genomes_project 7 103232633 103233566 + MGP_CASTEiJ_P0085890 Olfr491 protein_coding protein_coding MGP_CASTEiJ_T0081743.1 MGP_CASTEiJ_G0030703.1 mouse_genomes_project 7 7454467 7455385 + MGP_CASTEiJ_P0081743 Vmn1r82 protein_coding protein_coding MGP_CASTEiJ_T0081744.1 MGP_CASTEiJ_G0030703.1 mouse_genomes_project 7 7454470 7455385 + MGP_CASTEiJ_P0081744 Vmn1r82 protein_coding protein_coding MGP_CASTEiJ_T0085318.1 MGP_CASTEiJ_G0031592.1 mouse_genomes_project 7 94810618 94862914 + MGP_CASTEiJ_P0085318 Pgm2l1 protein_coding protein_coding MGP_CASTEiJ_T0085319.1 MGP_CASTEiJ_G0031592.1 mouse_genomes_project 7 94810912 94864987 + MGP_CASTEiJ_P0085319 Pgm2l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085320.1 MGP_CASTEiJ_G0031592.1 mouse_genomes_project 7 94810934 94866446 + MGP_CASTEiJ_P0085320 Pgm2l1 protein_coding protein_coding MGP_CASTEiJ_T0081756.1 MGP_CASTEiJ_G0030710.1 mouse_genomes_project 7 7920238 7933598 - MGP_CASTEiJ_P0081756 Zfp329 protein_coding protein_coding MGP_CASTEiJ_T0081757.1 MGP_CASTEiJ_G0030710.1 mouse_genomes_project 7 7920243 7933602 - MGP_CASTEiJ_P0081757 Zfp329 protein_coding protein_coding MGP_CASTEiJ_T0081758.1 MGP_CASTEiJ_G0030710.1 mouse_genomes_project 7 7921159 7923155 - Zfp329 protein_coding processed_transcript MGP_CASTEiJ_T0081759.1 MGP_CASTEiJ_G0030710.1 mouse_genomes_project 7 7921163 7933596 - MGP_CASTEiJ_P0081759 Zfp329 protein_coding protein_coding MGP_CASTEiJ_T0085617.1 MGP_CASTEiJ_G0031683.1 mouse_genomes_project 7 98246442 98247387 - MGP_CASTEiJ_P0085617 protein_coding protein_coding MGP_CASTEiJ_T0010621.1 MGP_CASTEiJ_G0008809.1 mouse_genomes_project 7 136849274 136849331 - Mir7686 miRNA miRNA MGP_CASTEiJ_T0084301.1 MGP_CASTEiJ_G0031353.1 mouse_genomes_project 7 50205551 50645567 + MGP_CASTEiJ_P0084301 Gabrb3 protein_coding protein_coding MGP_CASTEiJ_T0084302.1 MGP_CASTEiJ_G0031353.1 mouse_genomes_project 7 50391399 50644406 + MGP_CASTEiJ_P0084302 Gabrb3 protein_coding protein_coding MGP_CASTEiJ_T0084303.1 MGP_CASTEiJ_G0031353.1 mouse_genomes_project 7 50392043 50645571 + MGP_CASTEiJ_P0084303 Gabrb3 protein_coding protein_coding MGP_CASTEiJ_T0084304.1 MGP_CASTEiJ_G0031353.1 mouse_genomes_project 7 50392054 50579955 + Gabrb3 protein_coding retained_intron MGP_CASTEiJ_T0084305.1 MGP_CASTEiJ_G0031353.1 mouse_genomes_project 7 50392411 50633093 + MGP_CASTEiJ_P0084305 Gabrb3 protein_coding protein_coding MGP_CASTEiJ_T0084306.1 MGP_CASTEiJ_G0031353.1 mouse_genomes_project 7 50607503 50633038 + Gabrb3 protein_coding retained_intron MGP_CASTEiJ_T0085604.1 MGP_CASTEiJ_G0031671.1 mouse_genomes_project 7 97863093 97864319 + MGP_CASTEiJ_P0085604 Olfr584 protein_coding protein_coding MGP_CASTEiJ_T0081601.1 MGP_CASTEiJ_G0030630.1 mouse_genomes_project 7 1717800 1719999 + MGP_CASTEiJ_P0081601 Rpl28 protein_coding protein_coding MGP_CASTEiJ_T0081602.1 MGP_CASTEiJ_G0030630.1 mouse_genomes_project 7 1717916 1719459 + MGP_CASTEiJ_P0081602 Rpl28 protein_coding protein_coding MGP_CASTEiJ_T0081603.1 MGP_CASTEiJ_G0030630.1 mouse_genomes_project 7 1718314 1718742 + Rpl28 protein_coding retained_intron MGP_CASTEiJ_T0081604.1 MGP_CASTEiJ_G0030630.1 mouse_genomes_project 7 1718510 1719495 + MGP_CASTEiJ_P0081604 Rpl28 protein_coding protein_coding MGP_CASTEiJ_T0081605.1 MGP_CASTEiJ_G0030630.1 mouse_genomes_project 7 1718767 1719495 + Rpl28 protein_coding retained_intron MGP_CASTEiJ_T0088005.1 MGP_CASTEiJ_G0032306.1 mouse_genomes_project 7 141127771 141291969 + MGP_CASTEiJ_P0088005 Shank2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088006.1 MGP_CASTEiJ_G0032306.1 mouse_genomes_project 7 141127775 141292111 + MGP_CASTEiJ_P0088006 Shank2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088007.1 MGP_CASTEiJ_G0032306.1 mouse_genomes_project 7 141150214 141593311 + MGP_CASTEiJ_P0088007 Shank2 protein_coding protein_coding MGP_CASTEiJ_T0088008.1 MGP_CASTEiJ_G0032306.1 mouse_genomes_project 7 141322960 141581223 + MGP_CASTEiJ_P0088008 Shank2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088009.1 MGP_CASTEiJ_G0032306.1 mouse_genomes_project 7 141335813 141593311 + MGP_CASTEiJ_P0088009 Shank2 protein_coding protein_coding MGP_CASTEiJ_T0088010.1 MGP_CASTEiJ_G0032306.1 mouse_genomes_project 7 141447594 141591494 + MGP_CASTEiJ_P0088010 Shank2 protein_coding protein_coding MGP_CASTEiJ_T0088011.1 MGP_CASTEiJ_G0032306.1 mouse_genomes_project 7 141447648 141593299 + Shank2 protein_coding retained_intron MGP_CASTEiJ_T0088012.1 MGP_CASTEiJ_G0032306.1 mouse_genomes_project 7 141586662 141589483 + Shank2 protein_coding processed_transcript MGP_CASTEiJ_T0081733.1 MGP_CASTEiJ_G0030693.1 mouse_genomes_project 7 6418082 6425275 - MGP_CASTEiJ_P0081733 Aurkc protein_coding protein_coding MGP_CASTEiJ_T0083068.1 MGP_CASTEiJ_G0031059.1 mouse_genomes_project 7 23098352 23101057 + MGP_CASTEiJ_P0083068 Nphs1 protein_coding protein_coding MGP_CASTEiJ_T0083069.1 MGP_CASTEiJ_G0031059.1 mouse_genomes_project 7 23099768 23129979 + MGP_CASTEiJ_P0083069 Nphs1 protein_coding protein_coding MGP_CASTEiJ_T0083070.1 MGP_CASTEiJ_G0031059.1 mouse_genomes_project 7 23116063 23125253 + Nphs1 protein_coding retained_intron MGP_CASTEiJ_T0083071.1 MGP_CASTEiJ_G0031059.1 mouse_genomes_project 7 23120044 23129637 + MGP_CASTEiJ_P0083071 Nphs1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083072.1 MGP_CASTEiJ_G0031059.1 mouse_genomes_project 7 23129010 23129744 + Nphs1 protein_coding retained_intron MGP_CASTEiJ_T0081553.1 MGP_CASTEiJ_G0030620.1 mouse_genomes_project 7 1539219 1567342 - MGP_CASTEiJ_P0081553 Ppp6r1 protein_coding protein_coding MGP_CASTEiJ_T0081554.1 MGP_CASTEiJ_G0030620.1 mouse_genomes_project 7 1543631 1550611 - Ppp6r1 protein_coding retained_intron MGP_CASTEiJ_T0081555.1 MGP_CASTEiJ_G0030620.1 mouse_genomes_project 7 1551005 1567313 - Ppp6r1 protein_coding retained_intron MGP_CASTEiJ_T0081556.1 MGP_CASTEiJ_G0030620.1 mouse_genomes_project 7 1551743 1553698 - MGP_CASTEiJ_P0081556 Ppp6r1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081557.1 MGP_CASTEiJ_G0030620.1 mouse_genomes_project 7 1552583 1557838 - MGP_CASTEiJ_P0081557 Ppp6r1 protein_coding protein_coding MGP_CASTEiJ_T0081558.1 MGP_CASTEiJ_G0030620.1 mouse_genomes_project 7 1553650 1567304 - MGP_CASTEiJ_P0081558 Ppp6r1 protein_coding protein_coding MGP_CASTEiJ_T0083480.1 MGP_CASTEiJ_G0031136.1 mouse_genomes_project 7 28151089 28228295 + MGP_CASTEiJ_P0083480 Tshz3 protein_coding protein_coding MGP_CASTEiJ_T0083481.1 MGP_CASTEiJ_G0031136.1 mouse_genomes_project 7 28151206 28155108 + Tshz3 protein_coding processed_transcript MGP_CASTEiJ_T0101262.1 MGP_CASTEiJ_G0038175.1 mouse_genomes_project 7 97519583 97519700 - Gm24210 snoRNA snoRNA MGP_CASTEiJ_T0100043.1 MGP_CASTEiJ_G0036956.1 mouse_genomes_project 7 122328477 122328584 - Gm25579 snRNA snRNA MGP_CASTEiJ_T0087661.1 MGP_CASTEiJ_G0032246.1 mouse_genomes_project 7 138241019 138244716 - MGP_CASTEiJ_P0087661 Irf7 protein_coding protein_coding MGP_CASTEiJ_T0087662.1 MGP_CASTEiJ_G0032246.1 mouse_genomes_project 7 138241495 138244776 - MGP_CASTEiJ_P0087662 Irf7 protein_coding protein_coding MGP_CASTEiJ_T0087663.1 MGP_CASTEiJ_G0032246.1 mouse_genomes_project 7 138241496 138244718 - MGP_CASTEiJ_P0087663 Irf7 protein_coding protein_coding MGP_CASTEiJ_T0087664.1 MGP_CASTEiJ_G0032246.1 mouse_genomes_project 7 138241499 138244717 - Irf7 protein_coding retained_intron MGP_CASTEiJ_T0087665.1 MGP_CASTEiJ_G0032246.1 mouse_genomes_project 7 138241743 138243613 - MGP_CASTEiJ_P0087665 Irf7 protein_coding protein_coding MGP_CASTEiJ_T0087666.1 MGP_CASTEiJ_G0032246.1 mouse_genomes_project 7 138242102 138243452 - Irf7 protein_coding retained_intron MGP_CASTEiJ_T0087667.1 MGP_CASTEiJ_G0032246.1 mouse_genomes_project 7 138242284 138244348 - Irf7 protein_coding processed_transcript MGP_CASTEiJ_T0087668.1 MGP_CASTEiJ_G0032246.1 mouse_genomes_project 7 138242542 138243794 - Irf7 protein_coding retained_intron MGP_CASTEiJ_T0087669.1 MGP_CASTEiJ_G0032246.1 mouse_genomes_project 7 138243120 138244028 - Irf7 protein_coding retained_intron MGP_CASTEiJ_T0087670.1 MGP_CASTEiJ_G0032246.1 mouse_genomes_project 7 138243535 138244288 - Irf7 protein_coding retained_intron MGP_CASTEiJ_T0087671.1 MGP_CASTEiJ_G0032246.1 mouse_genomes_project 7 138243696 138244716 - Irf7 protein_coding processed_transcript MGP_CASTEiJ_T0008646.1 MGP_CASTEiJ_G0006997.1 mouse_genomes_project 7 44623750 44645646 - Gm29296 lincRNA lincRNA MGP_CASTEiJ_T0086491.1 MGP_CASTEiJ_G0031992.1 mouse_genomes_project 7 121157680 121176691 + MGP_CASTEiJ_P0086491 Kdm8 protein_coding protein_coding MGP_CASTEiJ_T0086492.1 MGP_CASTEiJ_G0031992.1 mouse_genomes_project 7 121157688 121174448 + MGP_CASTEiJ_P0086492 Kdm8 protein_coding protein_coding MGP_CASTEiJ_T0086282.1 MGP_CASTEiJ_G0031943.1 mouse_genomes_project 7 115256910 115280455 + MGP_CASTEiJ_P0086282 Acsm3 protein_coding protein_coding MGP_CASTEiJ_T0086283.1 MGP_CASTEiJ_G0031943.1 mouse_genomes_project 7 115256910 115280459 + MGP_CASTEiJ_P0086283 Acsm3 protein_coding protein_coding MGP_CASTEiJ_T0086284.1 MGP_CASTEiJ_G0031943.1 mouse_genomes_project 7 115256911 115280457 + MGP_CASTEiJ_P0086284 Acsm3 protein_coding protein_coding MGP_CASTEiJ_T0086285.1 MGP_CASTEiJ_G0031943.1 mouse_genomes_project 7 115256911 115283079 + MGP_CASTEiJ_P0086285 Acsm3 protein_coding protein_coding MGP_CASTEiJ_T0086286.1 MGP_CASTEiJ_G0031943.1 mouse_genomes_project 7 115261998 115280462 + MGP_CASTEiJ_P0086286 Acsm3 protein_coding protein_coding MGP_CASTEiJ_T0086287.1 MGP_CASTEiJ_G0031943.1 mouse_genomes_project 7 115270201 115274826 + Acsm3 protein_coding retained_intron MGP_CASTEiJ_T0086288.1 MGP_CASTEiJ_G0031943.1 mouse_genomes_project 7 115272703 115276585 + Acsm3 protein_coding retained_intron MGP_CASTEiJ_T0086289.1 MGP_CASTEiJ_G0031943.1 mouse_genomes_project 7 115276307 115276626 + Acsm3 protein_coding retained_intron MGP_CASTEiJ_T0002155.1 MGP_CASTEiJ_G0002075.1 mouse_genomes_project 7 36794972 36797603 + TEC TEC MGP_CASTEiJ_T0085527.1 MGP_CASTEiJ_G0031627.1 mouse_genomes_project 7 96821349 96834846 + MGP_CASTEiJ_P0085527 Trpc2 protein_coding protein_coding MGP_CASTEiJ_T0015274.1 MGP_CASTEiJ_G0013437.1 mouse_genomes_project 7 92358601 92358992 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102458.1 MGP_CASTEiJ_G0039183.1 mouse_genomes_project 7 7056964 7057929 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0083057.1 MGP_CASTEiJ_G0031055.1 mouse_genomes_project 7 23053986 23056117 - MGP_CASTEiJ_P0083057 Hcst protein_coding protein_coding MGP_CASTEiJ_T0087559.1 MGP_CASTEiJ_G0032223.1 mouse_genomes_project 7 137782995 137789781 + MGP_CASTEiJ_P0087559 Ric8a protein_coding protein_coding MGP_CASTEiJ_T0087560.1 MGP_CASTEiJ_G0032223.1 mouse_genomes_project 7 137783353 137784381 + Ric8a protein_coding retained_intron MGP_CASTEiJ_T0087561.1 MGP_CASTEiJ_G0032223.1 mouse_genomes_project 7 137783460 137784597 + Ric8a protein_coding processed_transcript MGP_CASTEiJ_T0087562.1 MGP_CASTEiJ_G0032223.1 mouse_genomes_project 7 137783480 137784581 + Ric8a protein_coding processed_transcript MGP_CASTEiJ_T0087563.1 MGP_CASTEiJ_G0032223.1 mouse_genomes_project 7 137783737 137789008 + Ric8a protein_coding retained_intron MGP_CASTEiJ_T0087564.1 MGP_CASTEiJ_G0032223.1 mouse_genomes_project 7 137784200 137785773 + Ric8a protein_coding processed_transcript MGP_CASTEiJ_T0087565.1 MGP_CASTEiJ_G0032223.1 mouse_genomes_project 7 137786688 137789194 + Ric8a protein_coding retained_intron MGP_CASTEiJ_T0087566.1 MGP_CASTEiJ_G0032223.1 mouse_genomes_project 7 137787219 137788668 + Ric8a protein_coding retained_intron MGP_CASTEiJ_T0005036.1 MGP_CASTEiJ_G0004298.1 mouse_genomes_project 7 19616537 19625242 - Gm15567 antisense antisense MGP_CASTEiJ_T0085836.1 MGP_CASTEiJ_G0031796.1 mouse_genomes_project 7 101639543 101642155 - MGP_CASTEiJ_P0085836 protein_coding protein_coding MGP_CASTEiJ_T0086933.1 MGP_CASTEiJ_G0032071.1 mouse_genomes_project 7 123427952 123433247 + Phkg2 protein_coding retained_intron MGP_CASTEiJ_T0086934.1 MGP_CASTEiJ_G0032071.1 mouse_genomes_project 7 123427992 123438355 + MGP_CASTEiJ_P0086934 Phkg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086935.1 MGP_CASTEiJ_G0032071.1 mouse_genomes_project 7 123428014 123438355 + MGP_CASTEiJ_P0086935 Phkg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086936.1 MGP_CASTEiJ_G0032071.1 mouse_genomes_project 7 123428016 123435194 + Phkg2 protein_coding retained_intron MGP_CASTEiJ_T0086937.1 MGP_CASTEiJ_G0032071.1 mouse_genomes_project 7 123428016 123439215 + MGP_CASTEiJ_P0086937 Phkg2 protein_coding protein_coding MGP_CASTEiJ_T0086938.1 MGP_CASTEiJ_G0032071.1 mouse_genomes_project 7 123428154 123439213 + MGP_CASTEiJ_P0086938 Phkg2 protein_coding protein_coding MGP_CASTEiJ_T0086939.1 MGP_CASTEiJ_G0032071.1 mouse_genomes_project 7 123428208 123439213 + MGP_CASTEiJ_P0086939 Phkg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086940.1 MGP_CASTEiJ_G0032071.1 mouse_genomes_project 7 123428267 123438306 + Phkg2 protein_coding retained_intron MGP_CASTEiJ_T0086941.1 MGP_CASTEiJ_G0032071.1 mouse_genomes_project 7 123432600 123439208 + MGP_CASTEiJ_P0086941 Phkg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086942.1 MGP_CASTEiJ_G0032071.1 mouse_genomes_project 7 123435189 123438327 + Phkg2 protein_coding retained_intron MGP_CASTEiJ_T0086943.1 MGP_CASTEiJ_G0032071.1 mouse_genomes_project 7 123438003 123438594 + Phkg2 protein_coding retained_intron MGP_CASTEiJ_T0083828.1 MGP_CASTEiJ_G0031226.1 mouse_genomes_project 7 37456876 37463556 - MGP_CASTEiJ_P0083828 Bcl2l12 protein_coding protein_coding MGP_CASTEiJ_T0083990.1 MGP_CASTEiJ_G0031267.1 mouse_genomes_project 7 38186072 38187655 - MGP_CASTEiJ_P0083990 Fgf21 protein_coding protein_coding MGP_CASTEiJ_T0085185.1 MGP_CASTEiJ_G0031557.1 mouse_genomes_project 7 92152679 92167013 - MGP_CASTEiJ_P0085185 Aqp11 protein_coding protein_coding MGP_CASTEiJ_T0085186.1 MGP_CASTEiJ_G0031557.1 mouse_genomes_project 7 92155055 92166661 - MGP_CASTEiJ_P0085186 Aqp11 protein_coding protein_coding MGP_CASTEiJ_T0085187.1 MGP_CASTEiJ_G0031557.1 mouse_genomes_project 7 92155223 92158066 - Aqp11 protein_coding retained_intron MGP_CASTEiJ_T0085188.1 MGP_CASTEiJ_G0031557.1 mouse_genomes_project 7 92156099 92161920 - Aqp11 protein_coding retained_intron MGP_CASTEiJ_T0085189.1 MGP_CASTEiJ_G0031557.1 mouse_genomes_project 7 92157731 92159183 - Aqp11 protein_coding processed_transcript MGP_CASTEiJ_T0087523.1 MGP_CASTEiJ_G0032196.1 mouse_genomes_project 7 137085125 137086188 + MGP_CASTEiJ_P0087523 protein_coding protein_coding MGP_CASTEiJ_T0084178.1 MGP_CASTEiJ_G0031327.1 mouse_genomes_project 7 41640899 41654259 - MGP_CASTEiJ_P0084178 Csrp3 protein_coding protein_coding MGP_CASTEiJ_T0084179.1 MGP_CASTEiJ_G0031327.1 mouse_genomes_project 7 41640899 41658652 - MGP_CASTEiJ_P0084179 Csrp3 protein_coding protein_coding MGP_CASTEiJ_T0085877.1 MGP_CASTEiJ_G0031829.1 mouse_genomes_project 7 102854824 102855907 + MGP_CASTEiJ_P0085877 Olfr472 protein_coding protein_coding MGP_CASTEiJ_T0085715.1 MGP_CASTEiJ_G0031761.1 mouse_genomes_project 7 100101035 100101974 + MGP_CASTEiJ_P0085715 Olfr677 protein_coding protein_coding MGP_CASTEiJ_T0085338.1 MGP_CASTEiJ_G0031596.1 mouse_genomes_project 7 95071101 95083351 + Ucp3 protein_coding retained_intron MGP_CASTEiJ_T0085339.1 MGP_CASTEiJ_G0031596.1 mouse_genomes_project 7 95071102 95084361 + MGP_CASTEiJ_P0085339 Ucp3 protein_coding protein_coding MGP_CASTEiJ_T0085340.1 MGP_CASTEiJ_G0031596.1 mouse_genomes_project 7 95071104 95083231 + MGP_CASTEiJ_P0085340 Ucp3 protein_coding protein_coding MGP_CASTEiJ_T0085341.1 MGP_CASTEiJ_G0031596.1 mouse_genomes_project 7 95071105 95083334 + Ucp3 protein_coding retained_intron MGP_CASTEiJ_T0081662.1 MGP_CASTEiJ_G0030660.1 mouse_genomes_project 7 3064353 3067599 - MGP_CASTEiJ_P0081662 Zfp787 protein_coding protein_coding MGP_CASTEiJ_T0085619.1 MGP_CASTEiJ_G0031685.1 mouse_genomes_project 7 98266777 98267692 - MGP_CASTEiJ_P0085619 protein_coding protein_coding MGP_CASTEiJ_T0005005.1 MGP_CASTEiJ_G0004278.1 mouse_genomes_project 7 1427670 1429340 + Gm15873 antisense antisense MGP_CASTEiJ_T0005006.1 MGP_CASTEiJ_G0004278.1 mouse_genomes_project 7 1427786 1431731 + Gm15873 antisense antisense MGP_CASTEiJ_T0081618.1 MGP_CASTEiJ_G0030635.1 mouse_genomes_project 7 1856351 1863106 + MGP_CASTEiJ_P0081618 Zfp628 protein_coding protein_coding MGP_CASTEiJ_T0085266.1 MGP_CASTEiJ_G0031575.1 mouse_genomes_project 7 93857527 93865303 - MGP_CASTEiJ_P0085266 Serpinh1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088042.1 MGP_CASTEiJ_G0032315.1 mouse_genomes_project 7 142117716 142134649 + MGP_CASTEiJ_P0088042 Oraov1 protein_coding protein_coding MGP_CASTEiJ_T0088043.1 MGP_CASTEiJ_G0032315.1 mouse_genomes_project 7 142117770 142123765 + MGP_CASTEiJ_P0088043 Oraov1 protein_coding protein_coding MGP_CASTEiJ_T0088044.1 MGP_CASTEiJ_G0032315.1 mouse_genomes_project 7 142117806 142120337 + Oraov1 protein_coding retained_intron MGP_CASTEiJ_T0088045.1 MGP_CASTEiJ_G0032315.1 mouse_genomes_project 7 142117808 142119093 + Oraov1 protein_coding processed_transcript MGP_CASTEiJ_T0088046.1 MGP_CASTEiJ_G0032315.1 mouse_genomes_project 7 142117815 142133395 + MGP_CASTEiJ_P0088046 Oraov1 protein_coding protein_coding MGP_CASTEiJ_T0088047.1 MGP_CASTEiJ_G0032315.1 mouse_genomes_project 7 142118771 142122460 + Oraov1 protein_coding retained_intron MGP_CASTEiJ_T0083473.1 MGP_CASTEiJ_G0031135.1 mouse_genomes_project 7 27157077 27188471 - MGP_CASTEiJ_P0083473 Zfp507 protein_coding protein_coding MGP_CASTEiJ_T0083474.1 MGP_CASTEiJ_G0031135.1 mouse_genomes_project 7 27158457 27179240 - MGP_CASTEiJ_P0083474 Zfp507 protein_coding protein_coding MGP_CASTEiJ_T0083475.1 MGP_CASTEiJ_G0031135.1 mouse_genomes_project 7 27160676 27188449 - MGP_CASTEiJ_P0083475 Zfp507 protein_coding protein_coding MGP_CASTEiJ_T0083476.1 MGP_CASTEiJ_G0031135.1 mouse_genomes_project 7 27164222 27164391 - Zfp507 protein_coding processed_transcript MGP_CASTEiJ_T0083477.1 MGP_CASTEiJ_G0031135.1 mouse_genomes_project 7 27176931 27188468 - MGP_CASTEiJ_P0083477 Zfp507 protein_coding protein_coding MGP_CASTEiJ_T0083478.1 MGP_CASTEiJ_G0031135.1 mouse_genomes_project 7 27186256 27188436 - Zfp507 protein_coding retained_intron MGP_CASTEiJ_T0083479.1 MGP_CASTEiJ_G0031135.1 mouse_genomes_project 7 27187497 27188485 - Zfp507 protein_coding retained_intron MGP_CASTEiJ_T0017669.1 MGP_CASTEiJ_G0015007.1 mouse_genomes_project 7 122731630 122742343 + Gm21984 processed_transcript processed_transcript MGP_CASTEiJ_T0085001.1 MGP_CASTEiJ_G0031506.1 mouse_genomes_project 7 80664671 80665802 - MGP_CASTEiJ_P0085001 protein_coding protein_coding MGP_CASTEiJ_T0082896.1 MGP_CASTEiJ_G0031016.1 mouse_genomes_project 7 21786148 21796924 + MGP_CASTEiJ_P0082896 Yif1b protein_coding protein_coding MGP_CASTEiJ_T0082897.1 MGP_CASTEiJ_G0031016.1 mouse_genomes_project 7 21786172 21796924 + MGP_CASTEiJ_P0082897 Yif1b protein_coding protein_coding MGP_CASTEiJ_T0082898.1 MGP_CASTEiJ_G0031016.1 mouse_genomes_project 7 21786188 21794200 + MGP_CASTEiJ_P0082898 Yif1b protein_coding protein_coding MGP_CASTEiJ_T0082899.1 MGP_CASTEiJ_G0031016.1 mouse_genomes_project 7 21786270 21796988 + MGP_CASTEiJ_P0082899 Yif1b protein_coding protein_coding MGP_CASTEiJ_T0082900.1 MGP_CASTEiJ_G0031016.1 mouse_genomes_project 7 21786291 21795353 + Yif1b protein_coding processed_transcript MGP_CASTEiJ_T0010541.1 MGP_CASTEiJ_G0008729.1 mouse_genomes_project 7 17255386 17255450 - Mir7047 miRNA miRNA MGP_CASTEiJ_T0086178.1 MGP_CASTEiJ_G0031917.1 mouse_genomes_project 7 111649294 111758188 - MGP_CASTEiJ_P0086178 Pik3c2a protein_coding protein_coding MGP_CASTEiJ_T0086179.1 MGP_CASTEiJ_G0031917.1 mouse_genomes_project 7 111649305 111653590 - Pik3c2a protein_coding retained_intron MGP_CASTEiJ_T0086180.1 MGP_CASTEiJ_G0031917.1 mouse_genomes_project 7 111652566 111687835 - MGP_CASTEiJ_P0086180 Pik3c2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086181.1 MGP_CASTEiJ_G0031917.1 mouse_genomes_project 7 111652688 111758188 - MGP_CASTEiJ_P0086181 Pik3c2a protein_coding protein_coding MGP_CASTEiJ_T0086182.1 MGP_CASTEiJ_G0031917.1 mouse_genomes_project 7 111654886 111655628 - Pik3c2a protein_coding retained_intron MGP_CASTEiJ_T0086183.1 MGP_CASTEiJ_G0031917.1 mouse_genomes_project 7 111709547 111758186 - MGP_CASTEiJ_P0086183 Pik3c2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086184.1 MGP_CASTEiJ_G0031917.1 mouse_genomes_project 7 111710533 111758178 - Pik3c2a protein_coding retained_intron MGP_CASTEiJ_T0082054.1 MGP_CASTEiJ_G0030799.1 mouse_genomes_project 7 13765621 13775864 - MGP_CASTEiJ_P0082054 Foxa3 protein_coding protein_coding MGP_CASTEiJ_T0015108.1 MGP_CASTEiJ_G0013271.1 mouse_genomes_project 7 440917 441187 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085666.1 MGP_CASTEiJ_G0031731.1 mouse_genomes_project 7 99112870 99113821 - MGP_CASTEiJ_P0085666 Olfr648 protein_coding protein_coding MGP_CASTEiJ_T0085599.1 MGP_CASTEiJ_G0031666.1 mouse_genomes_project 7 97776317 97777259 - MGP_CASTEiJ_P0085599 Olfr578 protein_coding protein_coding MGP_CASTEiJ_T0085413.1 MGP_CASTEiJ_G0031610.1 mouse_genomes_project 7 95988976 96019338 + MGP_CASTEiJ_P0085413 Stard10 protein_coding protein_coding MGP_CASTEiJ_T0085414.1 MGP_CASTEiJ_G0031610.1 mouse_genomes_project 7 95992992 96018851 + MGP_CASTEiJ_P0085414 Stard10 protein_coding protein_coding MGP_CASTEiJ_T0085415.1 MGP_CASTEiJ_G0031610.1 mouse_genomes_project 7 95993398 96016008 + MGP_CASTEiJ_P0085415 Stard10 protein_coding protein_coding MGP_CASTEiJ_T0085416.1 MGP_CASTEiJ_G0031610.1 mouse_genomes_project 7 95993623 96018903 + MGP_CASTEiJ_P0085416 Stard10 protein_coding protein_coding MGP_CASTEiJ_T0085417.1 MGP_CASTEiJ_G0031610.1 mouse_genomes_project 7 95993695 96019021 + MGP_CASTEiJ_P0085417 Stard10 protein_coding protein_coding MGP_CASTEiJ_T0085418.1 MGP_CASTEiJ_G0031610.1 mouse_genomes_project 7 95993736 96018763 + MGP_CASTEiJ_P0085418 Stard10 protein_coding protein_coding MGP_CASTEiJ_T0085419.1 MGP_CASTEiJ_G0031610.1 mouse_genomes_project 7 95993880 96017049 + MGP_CASTEiJ_P0085419 Stard10 protein_coding protein_coding MGP_CASTEiJ_T0085420.1 MGP_CASTEiJ_G0031610.1 mouse_genomes_project 7 96015230 96018851 + MGP_CASTEiJ_P0085420 Stard10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087835.1 MGP_CASTEiJ_G0032277.1 mouse_genomes_project 7 139522721 139527745 + Syt8 protein_coding processed_transcript MGP_CASTEiJ_T0087836.1 MGP_CASTEiJ_G0032277.1 mouse_genomes_project 7 139522817 139526838 + Syt8 protein_coding processed_transcript MGP_CASTEiJ_T0087837.1 MGP_CASTEiJ_G0032277.1 mouse_genomes_project 7 139522848 139528266 + MGP_CASTEiJ_P0087837 Syt8 protein_coding protein_coding MGP_CASTEiJ_T0087838.1 MGP_CASTEiJ_G0032277.1 mouse_genomes_project 7 139522872 139528198 + Syt8 protein_coding retained_intron MGP_CASTEiJ_T0087839.1 MGP_CASTEiJ_G0032277.1 mouse_genomes_project 7 139522872 139528198 + MGP_CASTEiJ_P0087839 Syt8 protein_coding protein_coding MGP_CASTEiJ_T0087840.1 MGP_CASTEiJ_G0032277.1 mouse_genomes_project 7 139522872 139528198 + MGP_CASTEiJ_P0087840 Syt8 protein_coding protein_coding MGP_CASTEiJ_T0087841.1 MGP_CASTEiJ_G0032277.1 mouse_genomes_project 7 139524696 139528175 + MGP_CASTEiJ_P0087841 Syt8 protein_coding protein_coding MGP_CASTEiJ_T0087842.1 MGP_CASTEiJ_G0032277.1 mouse_genomes_project 7 139526002 139526413 + MGP_CASTEiJ_P0087842 Syt8 protein_coding protein_coding MGP_CASTEiJ_T0087843.1 MGP_CASTEiJ_G0032277.1 mouse_genomes_project 7 139526291 139527854 + Syt8 protein_coding retained_intron MGP_CASTEiJ_T0087844.1 MGP_CASTEiJ_G0032277.1 mouse_genomes_project 7 139526884 139528182 + Syt8 protein_coding retained_intron MGP_CASTEiJ_T0005141.1 MGP_CASTEiJ_G0004373.1 mouse_genomes_project 7 117056930 117187132 - 4933432K03Rik antisense antisense MGP_CASTEiJ_T0005142.1 MGP_CASTEiJ_G0004373.1 mouse_genomes_project 7 117161055 117187134 - 4933432K03Rik antisense antisense MGP_CASTEiJ_T0005143.1 MGP_CASTEiJ_G0004373.1 mouse_genomes_project 7 117186573 117203563 - 4933432K03Rik antisense antisense MGP_CASTEiJ_T0082055.1 MGP_CASTEiJ_G0030800.1 mouse_genomes_project 7 13776702 13811493 + MGP_CASTEiJ_P0082055 Sympk protein_coding protein_coding MGP_CASTEiJ_T0082056.1 MGP_CASTEiJ_G0030800.1 mouse_genomes_project 7 13776745 13792942 + MGP_CASTEiJ_P0082056 Sympk protein_coding protein_coding MGP_CASTEiJ_T0082057.1 MGP_CASTEiJ_G0030800.1 mouse_genomes_project 7 13776748 13792054 + Sympk protein_coding retained_intron MGP_CASTEiJ_T0082058.1 MGP_CASTEiJ_G0030800.1 mouse_genomes_project 7 13776751 13808644 + MGP_CASTEiJ_P0082058 Sympk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082059.1 MGP_CASTEiJ_G0030800.1 mouse_genomes_project 7 13802549 13806945 + Sympk protein_coding processed_transcript MGP_CASTEiJ_T0082060.1 MGP_CASTEiJ_G0030800.1 mouse_genomes_project 7 13809224 13811488 + Sympk protein_coding processed_transcript MGP_CASTEiJ_T0082061.1 MGP_CASTEiJ_G0030800.1 mouse_genomes_project 7 13809291 13811494 + MGP_CASTEiJ_P0082061 Sympk protein_coding protein_coding MGP_CASTEiJ_T0082062.1 MGP_CASTEiJ_G0030800.1 mouse_genomes_project 7 13809321 13810772 + Sympk protein_coding retained_intron MGP_CASTEiJ_T0015173.1 MGP_CASTEiJ_G0013336.1 mouse_genomes_project 7 23897321 23898107 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084173.1 MGP_CASTEiJ_G0031324.1 mouse_genomes_project 7 41387045 41394004 - MGP_CASTEiJ_P0084173 Mrgprb2 protein_coding protein_coding MGP_CASTEiJ_T0087532.1 MGP_CASTEiJ_G0032203.1 mouse_genomes_project 7 137283757 137284954 - MGP_CASTEiJ_P0087532 Olfr530 protein_coding protein_coding MGP_CASTEiJ_T0084714.1 MGP_CASTEiJ_G0031434.1 mouse_genomes_project 7 73383005 73407834 - MGP_CASTEiJ_P0084714 Idh2 protein_coding protein_coding MGP_CASTEiJ_T0084715.1 MGP_CASTEiJ_G0031434.1 mouse_genomes_project 7 73383009 73407774 - MGP_CASTEiJ_P0084715 Idh2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084716.1 MGP_CASTEiJ_G0031434.1 mouse_genomes_project 7 73383188 73386561 - Idh2 protein_coding retained_intron MGP_CASTEiJ_T0084717.1 MGP_CASTEiJ_G0031434.1 mouse_genomes_project 7 73383202 73384187 - Idh2 protein_coding retained_intron MGP_CASTEiJ_T0084718.1 MGP_CASTEiJ_G0031434.1 mouse_genomes_project 7 73383218 73407746 - MGP_CASTEiJ_P0084718 Idh2 protein_coding protein_coding MGP_CASTEiJ_T0084719.1 MGP_CASTEiJ_G0031434.1 mouse_genomes_project 7 73384185 73389024 - MGP_CASTEiJ_P0084719 Idh2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084720.1 MGP_CASTEiJ_G0031434.1 mouse_genomes_project 7 73386323 73387291 - Idh2 protein_coding retained_intron MGP_CASTEiJ_T0087444.1 MGP_CASTEiJ_G0032176.1 mouse_genomes_project 7 136070136 136089184 + MGP_CASTEiJ_P0087444 Pwwp2b protein_coding protein_coding MGP_CASTEiJ_T0087445.1 MGP_CASTEiJ_G0032176.1 mouse_genomes_project 7 136070136 136089184 + MGP_CASTEiJ_P0087445 Pwwp2b protein_coding protein_coding MGP_CASTEiJ_T0087446.1 MGP_CASTEiJ_G0032176.1 mouse_genomes_project 7 136070141 136156145 + MGP_CASTEiJ_P0087446 Pwwp2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0085924.1 MGP_CASTEiJ_G0031866.1 mouse_genomes_project 7 104223909 104398761 - Stk33 protein_coding processed_transcript MGP_CASTEiJ_T0085925.1 MGP_CASTEiJ_G0031866.1 mouse_genomes_project 7 104223909 104398756 - MGP_CASTEiJ_P0085925 Stk33 protein_coding protein_coding MGP_CASTEiJ_T0085926.1 MGP_CASTEiJ_G0031866.1 mouse_genomes_project 7 104223909 104398497 - MGP_CASTEiJ_P0085926 Stk33 protein_coding protein_coding MGP_CASTEiJ_T0085927.1 MGP_CASTEiJ_G0031866.1 mouse_genomes_project 7 104223909 104398761 - MGP_CASTEiJ_P0085927 Stk33 protein_coding protein_coding MGP_CASTEiJ_T0085928.1 MGP_CASTEiJ_G0031866.1 mouse_genomes_project 7 104224283 104398678 - MGP_CASTEiJ_P0085928 Stk33 protein_coding protein_coding MGP_CASTEiJ_T0085827.1 MGP_CASTEiJ_G0031791.1 mouse_genomes_project 7 100938419 100942838 - MGP_CASTEiJ_P0085827 Mrpl17 protein_coding protein_coding MGP_CASTEiJ_T0085828.1 MGP_CASTEiJ_G0031791.1 mouse_genomes_project 7 100941415 100942697 - MGP_CASTEiJ_P0085828 Mrpl17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085829.1 MGP_CASTEiJ_G0031791.1 mouse_genomes_project 7 100941438 100942735 - Mrpl17 protein_coding retained_intron MGP_CASTEiJ_T0085830.1 MGP_CASTEiJ_G0031791.1 mouse_genomes_project 7 100941523 100942738 - Mrpl17 protein_coding processed_transcript MGP_CASTEiJ_T0085831.1 MGP_CASTEiJ_G0031791.1 mouse_genomes_project 7 100941879 100942767 - MGP_CASTEiJ_P0085831 Mrpl17 protein_coding protein_coding MGP_CASTEiJ_T0015167.1 MGP_CASTEiJ_G0013330.1 mouse_genomes_project 7 18500793 18501891 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084865.1 MGP_CASTEiJ_G0031456.1 mouse_genomes_project 7 74446979 74500004 + MGP_CASTEiJ_P0084865 protein_coding protein_coding MGP_CASTEiJ_T0084866.1 MGP_CASTEiJ_G0031456.1 mouse_genomes_project 7 74488914 74489777 + protein_coding retained_intron MGP_CASTEiJ_T0084995.1 MGP_CASTEiJ_G0031500.1 mouse_genomes_project 7 80402772 80403784 - MGP_CASTEiJ_P0084995 Olfr307 protein_coding protein_coding MGP_CASTEiJ_T0010629.1 MGP_CASTEiJ_G0008817.1 mouse_genomes_project 7 140688196 140688285 - Mir7064 miRNA miRNA MGP_CASTEiJ_T0011354.1 MGP_CASTEiJ_G0009542.1 mouse_genomes_project 7 66674440 66674661 + Gm23020 misc_RNA misc_RNA MGP_CASTEiJ_T0082253.1 MGP_CASTEiJ_G0030855.1 mouse_genomes_project 7 15772569 15774134 + MGP_CASTEiJ_P0082253 protein_coding protein_coding MGP_CASTEiJ_T0081918.1 MGP_CASTEiJ_G0030757.1 mouse_genomes_project 7 10996174 11016904 - MGP_CASTEiJ_P0081918 Ccdc9 protein_coding protein_coding MGP_CASTEiJ_T0081920.1 MGP_CASTEiJ_G0030757.1 mouse_genomes_project 7 10998222 10999953 - Ccdc9 protein_coding retained_intron MGP_CASTEiJ_T0081921.1 MGP_CASTEiJ_G0030757.1 mouse_genomes_project 7 10998225 11016875 - MGP_CASTEiJ_P0081921 Ccdc9 protein_coding protein_coding MGP_CASTEiJ_T0081922.1 MGP_CASTEiJ_G0030757.1 mouse_genomes_project 7 10999658 11010764 - Ccdc9 protein_coding retained_intron MGP_CASTEiJ_T0081923.1 MGP_CASTEiJ_G0030757.1 mouse_genomes_project 7 11000051 11002565 - MGP_CASTEiJ_P0081923 Ccdc9 protein_coding protein_coding MGP_CASTEiJ_T0081924.1 MGP_CASTEiJ_G0030757.1 mouse_genomes_project 7 11000196 11000879 - Ccdc9 protein_coding retained_intron MGP_CASTEiJ_T0081925.1 MGP_CASTEiJ_G0030757.1 mouse_genomes_project 7 11000775 11011233 - Ccdc9 protein_coding retained_intron MGP_CASTEiJ_T0081926.1 MGP_CASTEiJ_G0030757.1 mouse_genomes_project 7 11010692 11011873 - Ccdc9 protein_coding processed_transcript MGP_CASTEiJ_T0081927.1 MGP_CASTEiJ_G0030757.1 mouse_genomes_project 7 11012589 11016865 - MGP_CASTEiJ_P0081927 Ccdc9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081928.1 MGP_CASTEiJ_G0030757.1 mouse_genomes_project 7 11012598 11015621 - MGP_CASTEiJ_P0081928 Ccdc9 protein_coding protein_coding MGP_CASTEiJ_T0081929.1 MGP_CASTEiJ_G0030757.1 mouse_genomes_project 7 11012649 11016859 - MGP_CASTEiJ_P0081929 Ccdc9 protein_coding protein_coding MGP_CASTEiJ_T0081930.1 MGP_CASTEiJ_G0030757.1 mouse_genomes_project 7 11012770 11016858 - Ccdc9 protein_coding retained_intron MGP_CASTEiJ_T0081931.1 MGP_CASTEiJ_G0030757.1 mouse_genomes_project 7 11012903 11016110 - MGP_CASTEiJ_P0081931 Ccdc9 protein_coding protein_coding MGP_CASTEiJ_T0084062.1 MGP_CASTEiJ_G0031290.1 mouse_genomes_project 7 38529326 38538038 + MGP_CASTEiJ_P0084062 Ccdc114 protein_coding protein_coding MGP_CASTEiJ_T0084063.1 MGP_CASTEiJ_G0031290.1 mouse_genomes_project 7 38529470 38530320 + Ccdc114 protein_coding retained_intron MGP_CASTEiJ_T0084064.1 MGP_CASTEiJ_G0031290.1 mouse_genomes_project 7 38529497 38538044 + MGP_CASTEiJ_P0084064 Ccdc114 protein_coding protein_coding MGP_CASTEiJ_T0084065.1 MGP_CASTEiJ_G0031290.1 mouse_genomes_project 7 38529497 38544015 + MGP_CASTEiJ_P0084065 Ccdc114 protein_coding protein_coding MGP_CASTEiJ_T0084066.1 MGP_CASTEiJ_G0031290.1 mouse_genomes_project 7 38529774 38556114 + MGP_CASTEiJ_P0084066 Ccdc114 protein_coding protein_coding MGP_CASTEiJ_T0008744.1 MGP_CASTEiJ_G0007064.1 mouse_genomes_project 7 93772527 93778942 - Gm26705 lincRNA lincRNA MGP_CASTEiJ_T0015314.1 MGP_CASTEiJ_G0013477.1 mouse_genomes_project 7 122590157 122590414 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002194.1 MGP_CASTEiJ_G0002113.1 mouse_genomes_project 7 69730531 69731473 + TEC TEC MGP_CASTEiJ_T0015170.1 MGP_CASTEiJ_G0013333.1 mouse_genomes_project 7 20928334 20941395 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010606.1 MGP_CASTEiJ_G0008794.1 mouse_genomes_project 7 107861709 107861838 + Gm44462 miRNA miRNA MGP_CASTEiJ_T0081693.1 MGP_CASTEiJ_G0030668.1 mouse_genomes_project 7 3343808 3355646 + MGP_CASTEiJ_P0081693 protein_coding protein_coding MGP_CASTEiJ_T0081916.1 MGP_CASTEiJ_G0030756.1 mouse_genomes_project 7 10962569 10978013 - MGP_CASTEiJ_P0081916 C5ar1 protein_coding protein_coding MGP_CASTEiJ_T0081917.1 MGP_CASTEiJ_G0030756.1 mouse_genomes_project 7 10962571 10977811 - MGP_CASTEiJ_P0081917 C5ar1 protein_coding protein_coding MGP_CASTEiJ_T0015151.1 MGP_CASTEiJ_G0013314.1 mouse_genomes_project 7 16203330 16203642 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098641.1 MGP_CASTEiJ_G0035572.1 mouse_genomes_project 7 11216331 11216450 + n-R5s151 rRNA rRNA MGP_CASTEiJ_T0085823.1 MGP_CASTEiJ_G0031790.1 mouse_genomes_project 7 100877155 100913009 - MGP_CASTEiJ_P0085823 Dchs1 protein_coding protein_coding MGP_CASTEiJ_T0085824.1 MGP_CASTEiJ_G0031790.1 mouse_genomes_project 7 100877156 100913311 - MGP_CASTEiJ_P0085824 Dchs1 protein_coding protein_coding MGP_CASTEiJ_T0085825.1 MGP_CASTEiJ_G0031790.1 mouse_genomes_project 7 100881142 100882056 - Dchs1 protein_coding retained_intron MGP_CASTEiJ_T0085826.1 MGP_CASTEiJ_G0031790.1 mouse_genomes_project 7 100888712 100913011 - MGP_CASTEiJ_P0085826 Dchs1 protein_coding protein_coding MGP_CASTEiJ_T0085662.1 MGP_CASTEiJ_G0031728.1 mouse_genomes_project 7 99072913 99075565 - MGP_CASTEiJ_P0085662 Ubqln3 protein_coding protein_coding MGP_CASTEiJ_T0083863.1 MGP_CASTEiJ_G0031242.1 mouse_genomes_project 7 37671212 37672056 + MGP_CASTEiJ_P0083863 Pth2 protein_coding protein_coding MGP_CASTEiJ_T0005160.1 MGP_CASTEiJ_G0004387.1 mouse_genomes_project 7 124110796 124115865 - Gm44850 antisense antisense MGP_CASTEiJ_T0082547.1 MGP_CASTEiJ_G0030926.1 mouse_genomes_project 7 18218581 18251400 + MGP_CASTEiJ_P0082547 Cyp2b10 protein_coding protein_coding MGP_CASTEiJ_T0082548.1 MGP_CASTEiJ_G0030926.1 mouse_genomes_project 7 18218637 18251335 + MGP_CASTEiJ_P0082548 Cyp2b10 protein_coding protein_coding MGP_CASTEiJ_T0082549.1 MGP_CASTEiJ_G0030926.1 mouse_genomes_project 7 18240711 18241383 + Cyp2b10 protein_coding retained_intron MGP_CASTEiJ_T0004998.1 MGP_CASTEiJ_G0004275.1 mouse_genomes_project 7 965900 1018256 - 9430041J12Rik antisense antisense MGP_CASTEiJ_T0004999.1 MGP_CASTEiJ_G0004275.1 mouse_genomes_project 7 965931 1017972 - 9430041J12Rik antisense antisense MGP_CASTEiJ_T0005000.1 MGP_CASTEiJ_G0004275.1 mouse_genomes_project 7 966584 1017972 - 9430041J12Rik antisense antisense MGP_CASTEiJ_T0005001.1 MGP_CASTEiJ_G0004275.1 mouse_genomes_project 7 1017434 1017972 - 9430041J12Rik antisense pseudogene MGP_CASTEiJ_T0085888.1 MGP_CASTEiJ_G0031840.1 mouse_genomes_project 7 103170305 103190942 - MGP_CASTEiJ_P0085888 Olfr488 protein_coding protein_coding MGP_CASTEiJ_T0083285.1 MGP_CASTEiJ_G0031098.1 mouse_genomes_project 7 23804658 23821090 - MGP_CASTEiJ_P0083285 Hpn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083286.1 MGP_CASTEiJ_G0031098.1 mouse_genomes_project 7 23804658 23821105 - MGP_CASTEiJ_P0083286 Hpn protein_coding protein_coding MGP_CASTEiJ_T0083287.1 MGP_CASTEiJ_G0031098.1 mouse_genomes_project 7 23804658 23816810 - MGP_CASTEiJ_P0083287 Hpn protein_coding protein_coding MGP_CASTEiJ_T0083288.1 MGP_CASTEiJ_G0031098.1 mouse_genomes_project 7 23804658 23821097 - MGP_CASTEiJ_P0083288 Hpn protein_coding protein_coding MGP_CASTEiJ_T0083289.1 MGP_CASTEiJ_G0031098.1 mouse_genomes_project 7 23804662 23808439 - MGP_CASTEiJ_P0083289 Hpn protein_coding protein_coding MGP_CASTEiJ_T0083290.1 MGP_CASTEiJ_G0031098.1 mouse_genomes_project 7 23804666 23805219 - MGP_CASTEiJ_P0083290 Hpn protein_coding protein_coding MGP_CASTEiJ_T0083291.1 MGP_CASTEiJ_G0031098.1 mouse_genomes_project 7 23805171 23806220 - Hpn protein_coding retained_intron MGP_CASTEiJ_T0083292.1 MGP_CASTEiJ_G0031098.1 mouse_genomes_project 7 23808117 23809131 - Hpn protein_coding retained_intron MGP_CASTEiJ_T0083293.1 MGP_CASTEiJ_G0031098.1 mouse_genomes_project 7 23808422 23809404 - Hpn protein_coding retained_intron MGP_CASTEiJ_T0083294.1 MGP_CASTEiJ_G0031098.1 mouse_genomes_project 7 23814982 23817763 - MGP_CASTEiJ_P0083294 Hpn protein_coding protein_coding MGP_CASTEiJ_T0083295.1 MGP_CASTEiJ_G0031098.1 mouse_genomes_project 7 23816378 23816822 - Hpn protein_coding retained_intron MGP_CASTEiJ_T0083091.1 MGP_CASTEiJ_G0031064.1 mouse_genomes_project 7 23203764 23207953 - MGP_CASTEiJ_P0083091 Lin37 protein_coding protein_coding MGP_CASTEiJ_T0083092.1 MGP_CASTEiJ_G0031064.1 mouse_genomes_project 7 23203767 23204343 - Lin37 protein_coding retained_intron MGP_CASTEiJ_T0083093.1 MGP_CASTEiJ_G0031064.1 mouse_genomes_project 7 23203768 23208145 - MGP_CASTEiJ_P0083093 Lin37 protein_coding protein_coding MGP_CASTEiJ_T0083094.1 MGP_CASTEiJ_G0031064.1 mouse_genomes_project 7 23204181 23207966 - MGP_CASTEiJ_P0083094 Lin37 protein_coding protein_coding MGP_CASTEiJ_T0083095.1 MGP_CASTEiJ_G0031064.1 mouse_genomes_project 7 23205403 23207946 - Lin37 protein_coding processed_transcript MGP_CASTEiJ_T0087920.1 MGP_CASTEiJ_G0032287.1 mouse_genomes_project 7 140056957 140059407 - MGP_CASTEiJ_P0087920 Ascl2 protein_coding protein_coding MGP_CASTEiJ_T0087921.1 MGP_CASTEiJ_G0032287.1 mouse_genomes_project 7 140056964 140059407 - MGP_CASTEiJ_P0087921 Ascl2 protein_coding protein_coding MGP_CASTEiJ_T0087558.1 MGP_CASTEiJ_G0032222.1 mouse_genomes_project 7 137779391 137782389 - MGP_CASTEiJ_P0087558 Bet1l protein_coding protein_coding MGP_CASTEiJ_T0083943.1 MGP_CASTEiJ_G0031260.1 mouse_genomes_project 7 38013954 38032116 - MGP_CASTEiJ_P0083943 Dhdh protein_coding protein_coding MGP_CASTEiJ_T0083944.1 MGP_CASTEiJ_G0031260.1 mouse_genomes_project 7 38016392 38021791 - Dhdh protein_coding processed_transcript MGP_CASTEiJ_T0085196.1 MGP_CASTEiJ_G0031559.1 mouse_genomes_project 7 92360317 92481713 + MGP_CASTEiJ_P0085196 Gdpd4 protein_coding protein_coding MGP_CASTEiJ_T0085197.1 MGP_CASTEiJ_G0031559.1 mouse_genomes_project 7 92388034 92480661 + MGP_CASTEiJ_P0085197 Gdpd4 protein_coding protein_coding MGP_CASTEiJ_T0082471.1 MGP_CASTEiJ_G0030909.1 mouse_genomes_project 7 17678806 17680891 - MGP_CASTEiJ_P0082471 Cnfn protein_coding protein_coding MGP_CASTEiJ_T0082472.1 MGP_CASTEiJ_G0030909.1 mouse_genomes_project 7 17678808 17680912 - MGP_CASTEiJ_P0082472 Cnfn protein_coding protein_coding MGP_CASTEiJ_T0082565.1 MGP_CASTEiJ_G0030932.1 mouse_genomes_project 7 18950653 18982688 - MGP_CASTEiJ_P0082565 Cyp2b23 protein_coding protein_coding MGP_CASTEiJ_T0102496.1 MGP_CASTEiJ_G0039221.1 mouse_genomes_project 7 15919981 15920871 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101846.1 MGP_CASTEiJ_G0038594.1 mouse_genomes_project 7 101072597 101076191 - translated_unprocessed_pseudogene translated_unprocessed_pseudogene MGP_CASTEiJ_T0086964.1 MGP_CASTEiJ_G0032075.1 mouse_genomes_project 7 123517586 123571036 - MGP_CASTEiJ_P0086964 Bcl7c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086965.1 MGP_CASTEiJ_G0032075.1 mouse_genomes_project 7 123522936 123570890 - MGP_CASTEiJ_P0086965 Bcl7c protein_coding protein_coding MGP_CASTEiJ_T0086966.1 MGP_CASTEiJ_G0032075.1 mouse_genomes_project 7 123523092 123570713 - MGP_CASTEiJ_P0086966 Bcl7c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086967.1 MGP_CASTEiJ_G0032075.1 mouse_genomes_project 7 123567157 123571036 - MGP_CASTEiJ_P0086967 Bcl7c protein_coding protein_coding MGP_CASTEiJ_T0086968.1 MGP_CASTEiJ_G0032075.1 mouse_genomes_project 7 123567176 123569559 - MGP_CASTEiJ_P0086968 Bcl7c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086969.1 MGP_CASTEiJ_G0032075.1 mouse_genomes_project 7 123567982 123570326 - Bcl7c protein_coding processed_transcript MGP_CASTEiJ_T0015116.1 MGP_CASTEiJ_G0013279.1 mouse_genomes_project 7 1261187 1261365 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082575.1 MGP_CASTEiJ_G0030937.1 mouse_genomes_project 7 19506859 19511973 + MGP_CASTEiJ_P0082575 Cyp2t4 protein_coding protein_coding MGP_CASTEiJ_T0082576.1 MGP_CASTEiJ_G0030937.1 mouse_genomes_project 7 19508090 19512077 + MGP_CASTEiJ_P0082576 Cyp2t4 protein_coding protein_coding MGP_CASTEiJ_T0099993.1 MGP_CASTEiJ_G0036906.1 mouse_genomes_project 7 8057849 8057956 + Gm26325 snRNA snRNA MGP_CASTEiJ_T0002160.1 MGP_CASTEiJ_G0002080.1 mouse_genomes_project 7 47823511 47824284 - TEC TEC MGP_CASTEiJ_T0081723.1 MGP_CASTEiJ_G0030687.1 mouse_genomes_project 7 5741239 5749408 - MGP_CASTEiJ_P0081723 Zik1 protein_coding protein_coding MGP_CASTEiJ_T0084609.1 MGP_CASTEiJ_G0031412.1 mouse_genomes_project 7 72011154 72035712 - MGP_CASTEiJ_P0084609 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084610.1 MGP_CASTEiJ_G0031412.1 mouse_genomes_project 7 72011891 72022647 - MGP_CASTEiJ_P0084610 protein_coding protein_coding MGP_CASTEiJ_T0084611.1 MGP_CASTEiJ_G0031412.1 mouse_genomes_project 7 72018812 72031733 - MGP_CASTEiJ_P0084611 protein_coding protein_coding MGP_CASTEiJ_T0085981.1 MGP_CASTEiJ_G0031882.1 mouse_genomes_project 7 105249717 105315411 + MGP_CASTEiJ_P0085981 Swap70 protein_coding protein_coding MGP_CASTEiJ_T0085917.1 MGP_CASTEiJ_G0031864.1 mouse_genomes_project 7 103973232 103996655 - MGP_CASTEiJ_P0085917 Ric3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085918.1 MGP_CASTEiJ_G0031864.1 mouse_genomes_project 7 103973232 104025180 - MGP_CASTEiJ_P0085918 Ric3 protein_coding protein_coding MGP_CASTEiJ_T0085919.1 MGP_CASTEiJ_G0031864.1 mouse_genomes_project 7 103976902 104025171 - MGP_CASTEiJ_P0085919 Ric3 protein_coding protein_coding MGP_CASTEiJ_T0085920.1 MGP_CASTEiJ_G0031864.1 mouse_genomes_project 7 103983652 104025160 - Ric3 protein_coding retained_intron MGP_CASTEiJ_T0085921.1 MGP_CASTEiJ_G0031864.1 mouse_genomes_project 7 103996317 104025171 - Ric3 protein_coding retained_intron MGP_CASTEiJ_T0085922.1 MGP_CASTEiJ_G0031864.1 mouse_genomes_project 7 104022590 104025154 - Ric3 protein_coding processed_transcript MGP_CASTEiJ_T0087402.1 MGP_CASTEiJ_G0032168.1 mouse_genomes_project 7 134971950 135173728 - MGP_CASTEiJ_P0087402 Tcerg1l protein_coding protein_coding MGP_CASTEiJ_T0087403.1 MGP_CASTEiJ_G0032168.1 mouse_genomes_project 7 134972694 135038192 - Tcerg1l protein_coding processed_transcript MGP_CASTEiJ_T0087404.1 MGP_CASTEiJ_G0032168.1 mouse_genomes_project 7 135026687 135173730 - Tcerg1l protein_coding retained_intron MGP_CASTEiJ_T0002137.1 MGP_CASTEiJ_G0002057.1 mouse_genomes_project 7 26590859 26591614 + TEC TEC MGP_CASTEiJ_T0081942.1 MGP_CASTEiJ_G0030765.1 mouse_genomes_project 7 11421361 11425379 - MGP_CASTEiJ_P0081942 Ceacam15 protein_coding protein_coding MGP_CASTEiJ_T0011351.1 MGP_CASTEiJ_G0009539.1 mouse_genomes_project 7 28205874 28206153 - Gm24550 misc_RNA misc_RNA MGP_CASTEiJ_T0010583.1 MGP_CASTEiJ_G0008771.1 mouse_genomes_project 7 54498368 54498448 - Mir344-2 miRNA miRNA MGP_CASTEiJ_T0081703.1 MGP_CASTEiJ_G0030676.1 mouse_genomes_project 7 3488417 3489471 - MGP_CASTEiJ_P0081703 Olfr1349 protein_coding protein_coding MGP_CASTEiJ_T0015306.1 MGP_CASTEiJ_G0013469.1 mouse_genomes_project 7 120788552 120789085 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0087823.1 MGP_CASTEiJ_G0032273.1 mouse_genomes_project 7 139099876 139115638 - MGP_CASTEiJ_P0087823 Dusp8 protein_coding protein_coding MGP_CASTEiJ_T0087824.1 MGP_CASTEiJ_G0032273.1 mouse_genomes_project 7 139103942 139116209 - MGP_CASTEiJ_P0087824 Dusp8 protein_coding protein_coding MGP_CASTEiJ_T0008570.1 MGP_CASTEiJ_G0006935.1 mouse_genomes_project 7 335105 336884 - 3300002P13Rik lincRNA lincRNA MGP_CASTEiJ_T0083215.1 MGP_CASTEiJ_G0031088.1 mouse_genomes_project 7 23629392 23633020 + MGP_CASTEiJ_P0083215 protein_coding protein_coding MGP_CASTEiJ_T0005107.1 MGP_CASTEiJ_G0004351.1 mouse_genomes_project 7 77190900 77192286 + 2310044K18Rik antisense antisense MGP_CASTEiJ_T0011366.1 MGP_CASTEiJ_G0009554.1 mouse_genomes_project 7 126538905 126538981 - Gm27884 misc_RNA misc_RNA MGP_CASTEiJ_T0017677.1 MGP_CASTEiJ_G0015012.1 mouse_genomes_project 7 126896254 126901280 - Gm5602 processed_transcript processed_transcript MGP_CASTEiJ_T0099007.1 MGP_CASTEiJ_G0035927.1 mouse_genomes_project 7 71737392 71756657 - Gm44606 sense_intronic sense_intronic MGP_CASTEiJ_T0008691.1 MGP_CASTEiJ_G0007032.1 mouse_genomes_project 7 66683379 66683936 - lincRNA lincRNA MGP_CASTEiJ_T0102501.1 MGP_CASTEiJ_G0039225.1 mouse_genomes_project 7 24746346 24747533 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0084999.1 MGP_CASTEiJ_G0031504.1 mouse_genomes_project 7 80484809 80501074 + MGP_CASTEiJ_P0084999 Olfr301 protein_coding protein_coding MGP_CASTEiJ_T0084090.1 MGP_CASTEiJ_G0031298.1 mouse_genomes_project 7 39027851 39065989 + MGP_CASTEiJ_P0084090 Kcnc1 protein_coding protein_coding MGP_CASTEiJ_T0084091.1 MGP_CASTEiJ_G0031298.1 mouse_genomes_project 7 39029002 39072679 + MGP_CASTEiJ_P0084091 Kcnc1 protein_coding protein_coding MGP_CASTEiJ_T0084092.1 MGP_CASTEiJ_G0031298.1 mouse_genomes_project 7 39053836 39060405 + Kcnc1 protein_coding processed_transcript MGP_CASTEiJ_T0086487.1 MGP_CASTEiJ_G0031990.1 mouse_genomes_project 7 119189794 119215091 - MGP_CASTEiJ_P0086487 Zkscan2 protein_coding protein_coding MGP_CASTEiJ_T0086488.1 MGP_CASTEiJ_G0031990.1 mouse_genomes_project 7 119192144 119195329 - Zkscan2 protein_coding retained_intron MGP_CASTEiJ_T0086489.1 MGP_CASTEiJ_G0031990.1 mouse_genomes_project 7 119209348 119215573 - MGP_CASTEiJ_P0086489 Zkscan2 protein_coding protein_coding MGP_CASTEiJ_T0086655.1 MGP_CASTEiJ_G0032020.1 mouse_genomes_project 7 122464992 122466279 + Bola2 protein_coding retained_intron MGP_CASTEiJ_T0086656.1 MGP_CASTEiJ_G0032020.1 mouse_genomes_project 7 122465027 122466651 + MGP_CASTEiJ_P0086656 Bola2 protein_coding protein_coding MGP_CASTEiJ_T0086657.1 MGP_CASTEiJ_G0032020.1 mouse_genomes_project 7 122465557 122466285 + Bola2 protein_coding processed_transcript MGP_CASTEiJ_T0086658.1 MGP_CASTEiJ_G0032020.1 mouse_genomes_project 7 122465564 122466289 + MGP_CASTEiJ_P0086658 Bola2 protein_coding protein_coding MGP_CASTEiJ_T0086659.1 MGP_CASTEiJ_G0032020.1 mouse_genomes_project 7 122465594 122469394 + Bola2 protein_coding retained_intron MGP_CASTEiJ_T0101244.1 MGP_CASTEiJ_G0038157.1 mouse_genomes_project 7 52154061 52154130 - snoRNA snoRNA MGP_CASTEiJ_T0082833.1 MGP_CASTEiJ_G0031002.1 mouse_genomes_project 7 21364971 21371345 + Ech1 protein_coding retained_intron MGP_CASTEiJ_T0082834.1 MGP_CASTEiJ_G0031002.1 mouse_genomes_project 7 21364971 21373450 + MGP_CASTEiJ_P0082834 Ech1 protein_coding protein_coding MGP_CASTEiJ_T0082835.1 MGP_CASTEiJ_G0031002.1 mouse_genomes_project 7 21365104 21366413 + Ech1 protein_coding retained_intron MGP_CASTEiJ_T0082836.1 MGP_CASTEiJ_G0031002.1 mouse_genomes_project 7 21365713 21372436 + Ech1 protein_coding processed_transcript MGP_CASTEiJ_T0082837.1 MGP_CASTEiJ_G0031002.1 mouse_genomes_project 7 21365959 21373450 + MGP_CASTEiJ_P0082837 Ech1 protein_coding protein_coding MGP_CASTEiJ_T0082838.1 MGP_CASTEiJ_G0031002.1 mouse_genomes_project 7 21371353 21373450 + Ech1 protein_coding retained_intron MGP_CASTEiJ_T0082839.1 MGP_CASTEiJ_G0031002.1 mouse_genomes_project 7 21372453 21373450 + Ech1 protein_coding retained_intron MGP_CASTEiJ_T0084528.1 MGP_CASTEiJ_G0031399.1 mouse_genomes_project 7 65023593 65291565 - MGP_CASTEiJ_P0084528 Mctp2 protein_coding protein_coding MGP_CASTEiJ_T0084529.1 MGP_CASTEiJ_G0031399.1 mouse_genomes_project 7 65026178 65058764 - MGP_CASTEiJ_P0084529 Mctp2 protein_coding protein_coding MGP_CASTEiJ_T0084530.1 MGP_CASTEiJ_G0031399.1 mouse_genomes_project 7 65069895 65121483 - MGP_CASTEiJ_P0084530 Mctp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084531.1 MGP_CASTEiJ_G0031399.1 mouse_genomes_project 7 65187756 65196828 - Mctp2 protein_coding retained_intron MGP_CASTEiJ_T0084532.1 MGP_CASTEiJ_G0031399.1 mouse_genomes_project 7 65233708 65291565 - Mctp2 protein_coding retained_intron MGP_CASTEiJ_T0086484.1 MGP_CASTEiJ_G0031989.1 mouse_genomes_project 7 119176525 119182362 + MGP_CASTEiJ_P0086484 Aqp8 protein_coding protein_coding MGP_CASTEiJ_T0086485.1 MGP_CASTEiJ_G0031989.1 mouse_genomes_project 7 119176546 119182344 + MGP_CASTEiJ_P0086485 Aqp8 protein_coding protein_coding MGP_CASTEiJ_T0086486.1 MGP_CASTEiJ_G0031989.1 mouse_genomes_project 7 119177987 119182356 + Aqp8 protein_coding processed_transcript MGP_CASTEiJ_T0085592.1 MGP_CASTEiJ_G0031660.1 mouse_genomes_project 7 97685425 97686394 - MGP_CASTEiJ_P0085592 Olfr571 protein_coding protein_coding MGP_CASTEiJ_T0010554.1 MGP_CASTEiJ_G0008742.1 mouse_genomes_project 7 23237580 23237638 + Mir3569 miRNA miRNA MGP_CASTEiJ_T0088054.1 MGP_CASTEiJ_G0032318.1 mouse_genomes_project 7 142546178 142555254 + MGP_CASTEiJ_P0088054 Mrgprd protein_coding protein_coding MGP_CASTEiJ_T0015138.1 MGP_CASTEiJ_G0013301.1 mouse_genomes_project 7 9267253 9274615 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084489.1 MGP_CASTEiJ_G0031391.1 mouse_genomes_project 7 60164487 60297905 - MGP_CASTEiJ_P0084489 Lrrc28 protein_coding protein_coding MGP_CASTEiJ_T0084490.1 MGP_CASTEiJ_G0031391.1 mouse_genomes_project 7 60164488 60293999 - MGP_CASTEiJ_P0084490 Lrrc28 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084491.1 MGP_CASTEiJ_G0031391.1 mouse_genomes_project 7 60165475 60230472 - Lrrc28 protein_coding processed_transcript MGP_CASTEiJ_T0084492.1 MGP_CASTEiJ_G0031391.1 mouse_genomes_project 7 60180868 60294035 - MGP_CASTEiJ_P0084492 Lrrc28 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084493.1 MGP_CASTEiJ_G0031391.1 mouse_genomes_project 7 60180993 60186680 - Lrrc28 protein_coding processed_transcript MGP_CASTEiJ_T0084494.1 MGP_CASTEiJ_G0031391.1 mouse_genomes_project 7 60182991 60271213 - Lrrc28 protein_coding processed_transcript MGP_CASTEiJ_T0084495.1 MGP_CASTEiJ_G0031391.1 mouse_genomes_project 7 60183082 60255611 - Lrrc28 protein_coding processed_transcript MGP_CASTEiJ_T0084496.1 MGP_CASTEiJ_G0031391.1 mouse_genomes_project 7 60183092 60271162 - Lrrc28 protein_coding processed_transcript MGP_CASTEiJ_T0084497.1 MGP_CASTEiJ_G0031391.1 mouse_genomes_project 7 60196171 60297878 - MGP_CASTEiJ_P0084497 Lrrc28 protein_coding protein_coding MGP_CASTEiJ_T0084498.1 MGP_CASTEiJ_G0031391.1 mouse_genomes_project 7 60244878 60297881 - MGP_CASTEiJ_P0084498 Lrrc28 protein_coding protein_coding MGP_CASTEiJ_T0084499.1 MGP_CASTEiJ_G0031391.1 mouse_genomes_project 7 60245874 60271184 - Lrrc28 protein_coding processed_transcript MGP_CASTEiJ_T0084500.1 MGP_CASTEiJ_G0031391.1 mouse_genomes_project 7 60266837 60297942 - MGP_CASTEiJ_P0084500 Lrrc28 protein_coding protein_coding MGP_CASTEiJ_T0086875.1 MGP_CASTEiJ_G0032057.1 mouse_genomes_project 7 123090699 123092874 - MGP_CASTEiJ_P0086875 protein_coding protein_coding MGP_CASTEiJ_T0010522.1 MGP_CASTEiJ_G0008710.1 mouse_genomes_project 7 110126 110208 + Mir292 miRNA miRNA MGP_CASTEiJ_T0084894.1 MGP_CASTEiJ_G0031464.1 mouse_genomes_project 7 75016724 75042621 + MGP_CASTEiJ_P0084894 Whamm protein_coding protein_coding MGP_CASTEiJ_T0084895.1 MGP_CASTEiJ_G0031464.1 mouse_genomes_project 7 75016725 75042338 + MGP_CASTEiJ_P0084895 Whamm protein_coding unknown_likely_coding MGP_CASTEiJ_T0098647.1 MGP_CASTEiJ_G0035578.1 mouse_genomes_project 7 76260852 76260960 - n-R5s154 rRNA rRNA MGP_CASTEiJ_T0085475.1 MGP_CASTEiJ_G0031618.1 mouse_genomes_project 7 96597857 96620082 + MGP_CASTEiJ_P0085475 Anapc15 protein_coding protein_coding MGP_CASTEiJ_T0085476.1 MGP_CASTEiJ_G0031618.1 mouse_genomes_project 7 96616537 96618562 + Anapc15 protein_coding processed_transcript MGP_CASTEiJ_T0085477.1 MGP_CASTEiJ_G0031618.1 mouse_genomes_project 7 96616846 96620079 + MGP_CASTEiJ_P0085477 Anapc15 protein_coding protein_coding MGP_CASTEiJ_T0085478.1 MGP_CASTEiJ_G0031618.1 mouse_genomes_project 7 96616914 96618764 + Anapc15 protein_coding retained_intron MGP_CASTEiJ_T0085479.1 MGP_CASTEiJ_G0031618.1 mouse_genomes_project 7 96616922 96620019 + MGP_CASTEiJ_P0085479 Anapc15 protein_coding protein_coding MGP_CASTEiJ_T0085480.1 MGP_CASTEiJ_G0031618.1 mouse_genomes_project 7 96616923 96622179 + MGP_CASTEiJ_P0085480 Anapc15 protein_coding protein_coding MGP_CASTEiJ_T0085481.1 MGP_CASTEiJ_G0031618.1 mouse_genomes_project 7 96616934 96620077 + Anapc15 protein_coding retained_intron MGP_CASTEiJ_T0085482.1 MGP_CASTEiJ_G0031618.1 mouse_genomes_project 7 96617369 96618565 + Anapc15 protein_coding processed_transcript MGP_CASTEiJ_T0085483.1 MGP_CASTEiJ_G0031618.1 mouse_genomes_project 7 96617469 96619581 + MGP_CASTEiJ_P0085483 Anapc15 protein_coding protein_coding MGP_CASTEiJ_T0085484.1 MGP_CASTEiJ_G0031618.1 mouse_genomes_project 7 96617898 96619117 + Anapc15 protein_coding retained_intron MGP_CASTEiJ_T0085485.1 MGP_CASTEiJ_G0031618.1 mouse_genomes_project 7 96618268 96622385 + MGP_CASTEiJ_P0085485 Anapc15 protein_coding protein_coding MGP_CASTEiJ_T0085486.1 MGP_CASTEiJ_G0031618.1 mouse_genomes_project 7 96618331 96622179 + MGP_CASTEiJ_P0085486 Anapc15 protein_coding protein_coding MGP_CASTEiJ_T0085488.1 MGP_CASTEiJ_G0031618.1 mouse_genomes_project 7 96619530 96620083 + Anapc15 protein_coding processed_transcript MGP_CASTEiJ_T0086884.1 MGP_CASTEiJ_G0032060.1 mouse_genomes_project 7 123208060 123211934 - MGP_CASTEiJ_P0086884 Zfp747 protein_coding protein_coding MGP_CASTEiJ_T0083056.1 MGP_CASTEiJ_G0031054.1 mouse_genomes_project 7 23050088 23053847 + MGP_CASTEiJ_P0083056 Tyrobp protein_coding protein_coding MGP_CASTEiJ_T0015107.1 MGP_CASTEiJ_G0013270.1 mouse_genomes_project 7 189886 190766 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015149.1 MGP_CASTEiJ_G0013312.1 mouse_genomes_project 7 14782233 14782806 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008681.1 MGP_CASTEiJ_G0007024.1 mouse_genomes_project 7 66106963 66109117 + 4933435G04Rik lincRNA lincRNA MGP_CASTEiJ_T0099006.1 MGP_CASTEiJ_G0035926.1 mouse_genomes_project 7 65114748 65115788 - sense_intronic sense_intronic MGP_CASTEiJ_T0084612.1 MGP_CASTEiJ_G0031413.1 mouse_genomes_project 7 72094781 72107276 + Aen protein_coding processed_transcript MGP_CASTEiJ_T0084613.1 MGP_CASTEiJ_G0031413.1 mouse_genomes_project 7 72094854 72107276 + MGP_CASTEiJ_P0084613 Aen protein_coding protein_coding MGP_CASTEiJ_T0084614.1 MGP_CASTEiJ_G0031413.1 mouse_genomes_project 7 72094861 72104432 + MGP_CASTEiJ_P0084614 Aen protein_coding protein_coding MGP_CASTEiJ_T0084615.1 MGP_CASTEiJ_G0031413.1 mouse_genomes_project 7 72094936 72104429 + MGP_CASTEiJ_P0084615 Aen protein_coding protein_coding MGP_CASTEiJ_T0084616.1 MGP_CASTEiJ_G0031413.1 mouse_genomes_project 7 72096979 72098886 + MGP_CASTEiJ_P0084616 Aen protein_coding protein_coding MGP_CASTEiJ_T0084617.1 MGP_CASTEiJ_G0031413.1 mouse_genomes_project 7 72098424 72102056 + Aen protein_coding processed_transcript MGP_CASTEiJ_T0084618.1 MGP_CASTEiJ_G0031413.1 mouse_genomes_project 7 72098642 72103417 + MGP_CASTEiJ_P0084618 Aen protein_coding protein_coding MGP_CASTEiJ_T0015154.1 MGP_CASTEiJ_G0013317.1 mouse_genomes_project 7 16486059 16488831 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0087136.1 MGP_CASTEiJ_G0032110.1 mouse_genomes_project 7 124352209 124376195 - MGP_CASTEiJ_P0087136 Tial1 protein_coding protein_coding MGP_CASTEiJ_T0087137.1 MGP_CASTEiJ_G0032110.1 mouse_genomes_project 7 124352657 124376175 - Tial1 protein_coding retained_intron MGP_CASTEiJ_T0087138.1 MGP_CASTEiJ_G0032110.1 mouse_genomes_project 7 124353837 124376196 - MGP_CASTEiJ_P0087138 Tial1 protein_coding protein_coding MGP_CASTEiJ_T0087139.1 MGP_CASTEiJ_G0032110.1 mouse_genomes_project 7 124354229 124375846 - MGP_CASTEiJ_P0087139 Tial1 protein_coding protein_coding MGP_CASTEiJ_T0087140.1 MGP_CASTEiJ_G0032110.1 mouse_genomes_project 7 124354643 124357340 - MGP_CASTEiJ_P0087140 Tial1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087141.1 MGP_CASTEiJ_G0032110.1 mouse_genomes_project 7 124354714 124375878 - MGP_CASTEiJ_P0087141 Tial1 protein_coding protein_coding MGP_CASTEiJ_T0087142.1 MGP_CASTEiJ_G0032110.1 mouse_genomes_project 7 124354714 124376240 - MGP_CASTEiJ_P0087142 Tial1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087143.1 MGP_CASTEiJ_G0032110.1 mouse_genomes_project 7 124354714 124374514 - MGP_CASTEiJ_P0087143 Tial1 protein_coding protein_coding MGP_CASTEiJ_T0087144.1 MGP_CASTEiJ_G0032110.1 mouse_genomes_project 7 124354745 124375869 - MGP_CASTEiJ_P0087144 Tial1 protein_coding protein_coding MGP_CASTEiJ_T0087145.1 MGP_CASTEiJ_G0032110.1 mouse_genomes_project 7 124356248 124361650 - MGP_CASTEiJ_P0087145 Tial1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087146.1 MGP_CASTEiJ_G0032110.1 mouse_genomes_project 7 124356723 124358140 - Tial1 protein_coding retained_intron MGP_CASTEiJ_T0087147.1 MGP_CASTEiJ_G0032110.1 mouse_genomes_project 7 124357246 124368305 - MGP_CASTEiJ_P0087147 Tial1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087148.1 MGP_CASTEiJ_G0032110.1 mouse_genomes_project 7 124361151 124362182 - Tial1 protein_coding retained_intron MGP_CASTEiJ_T0087056.1 MGP_CASTEiJ_G0032094.1 mouse_genomes_project 7 123845996 123865225 + MGP_CASTEiJ_P0087056 Fus protein_coding protein_coding MGP_CASTEiJ_T0087057.1 MGP_CASTEiJ_G0032094.1 mouse_genomes_project 7 123846029 123861580 + MGP_CASTEiJ_P0087057 Fus protein_coding protein_coding MGP_CASTEiJ_T0087058.1 MGP_CASTEiJ_G0032094.1 mouse_genomes_project 7 123846030 123853880 + Fus protein_coding retained_intron MGP_CASTEiJ_T0087059.1 MGP_CASTEiJ_G0032094.1 mouse_genomes_project 7 123846030 123861577 + Fus protein_coding retained_intron MGP_CASTEiJ_T0087060.1 MGP_CASTEiJ_G0032094.1 mouse_genomes_project 7 123846030 123851771 + Fus protein_coding processed_transcript MGP_CASTEiJ_T0087061.1 MGP_CASTEiJ_G0032094.1 mouse_genomes_project 7 123846047 123861580 + MGP_CASTEiJ_P0087061 Fus protein_coding protein_coding MGP_CASTEiJ_T0087062.1 MGP_CASTEiJ_G0032094.1 mouse_genomes_project 7 123851351 123853880 + Fus protein_coding retained_intron MGP_CASTEiJ_T0087063.1 MGP_CASTEiJ_G0032094.1 mouse_genomes_project 7 123851432 123856818 + Fus protein_coding processed_transcript MGP_CASTEiJ_T0087064.1 MGP_CASTEiJ_G0032094.1 mouse_genomes_project 7 123853698 123857778 + Fus protein_coding retained_intron MGP_CASTEiJ_T0087065.1 MGP_CASTEiJ_G0032094.1 mouse_genomes_project 7 123854525 123856382 + Fus protein_coding retained_intron MGP_CASTEiJ_T0087066.1 MGP_CASTEiJ_G0032094.1 mouse_genomes_project 7 123854556 123864409 + MGP_CASTEiJ_P0087066 Fus protein_coding protein_coding MGP_CASTEiJ_T0087067.1 MGP_CASTEiJ_G0032094.1 mouse_genomes_project 7 123855233 123859785 + Fus protein_coding retained_intron MGP_CASTEiJ_T0087068.1 MGP_CASTEiJ_G0032094.1 mouse_genomes_project 7 123856860 123860996 + MGP_CASTEiJ_P0087068 Fus protein_coding protein_coding MGP_CASTEiJ_T0087069.1 MGP_CASTEiJ_G0032094.1 mouse_genomes_project 7 123857682 123859735 + Fus protein_coding retained_intron MGP_CASTEiJ_T0087070.1 MGP_CASTEiJ_G0032094.1 mouse_genomes_project 7 123859764 123861376 + Fus protein_coding retained_intron MGP_CASTEiJ_T0087071.1 MGP_CASTEiJ_G0032094.1 mouse_genomes_project 7 123862606 123865225 + MGP_CASTEiJ_P0087071 Fus protein_coding protein_coding MGP_CASTEiJ_T0083817.1 MGP_CASTEiJ_G0031219.1 mouse_genomes_project 7 37335048 37349133 - MGP_CASTEiJ_P0083817 Med25 protein_coding protein_coding MGP_CASTEiJ_T0085295.1 MGP_CASTEiJ_G0031583.1 mouse_genomes_project 7 94304091 94305264 + MGP_CASTEiJ_P0085295 Olfr521 protein_coding protein_coding MGP_CASTEiJ_T0085313.1 MGP_CASTEiJ_G0031590.1 mouse_genomes_project 7 94737555 94739582 + MGP_CASTEiJ_P0085313 Lipt2 protein_coding protein_coding MGP_CASTEiJ_T0083790.1 MGP_CASTEiJ_G0031216.1 mouse_genomes_project 7 37299782 37306217 + MGP_CASTEiJ_P0083790 Akt1s1 protein_coding protein_coding MGP_CASTEiJ_T0083791.1 MGP_CASTEiJ_G0031216.1 mouse_genomes_project 7 37300015 37306230 + MGP_CASTEiJ_P0083791 Akt1s1 protein_coding protein_coding MGP_CASTEiJ_T0083792.1 MGP_CASTEiJ_G0031216.1 mouse_genomes_project 7 37300135 37306226 + Akt1s1 protein_coding retained_intron MGP_CASTEiJ_T0083793.1 MGP_CASTEiJ_G0031216.1 mouse_genomes_project 7 37300372 37303776 + MGP_CASTEiJ_P0083793 Akt1s1 protein_coding protein_coding MGP_CASTEiJ_T0083794.1 MGP_CASTEiJ_G0031216.1 mouse_genomes_project 7 37300420 37305544 + MGP_CASTEiJ_P0083794 Akt1s1 protein_coding protein_coding MGP_CASTEiJ_T0083795.1 MGP_CASTEiJ_G0031216.1 mouse_genomes_project 7 37300798 37304831 + MGP_CASTEiJ_P0083795 Akt1s1 protein_coding protein_coding MGP_CASTEiJ_T0083796.1 MGP_CASTEiJ_G0031216.1 mouse_genomes_project 7 37300807 37306227 + MGP_CASTEiJ_P0083796 Akt1s1 protein_coding protein_coding MGP_CASTEiJ_T0083797.1 MGP_CASTEiJ_G0031216.1 mouse_genomes_project 7 37301187 37303693 + MGP_CASTEiJ_P0083797 Akt1s1 protein_coding protein_coding MGP_CASTEiJ_T0083798.1 MGP_CASTEiJ_G0031216.1 mouse_genomes_project 7 37302327 37303468 + MGP_CASTEiJ_P0083798 Akt1s1 protein_coding protein_coding MGP_CASTEiJ_T0083799.1 MGP_CASTEiJ_G0031216.1 mouse_genomes_project 7 37303400 37305494 + MGP_CASTEiJ_P0083799 Akt1s1 protein_coding protein_coding MGP_CASTEiJ_T0083800.1 MGP_CASTEiJ_G0031216.1 mouse_genomes_project 7 37303749 37305452 + Akt1s1 protein_coding retained_intron MGP_CASTEiJ_T0081472.1 MGP_CASTEiJ_G0030605.1 mouse_genomes_project 7 1036005 1041147 + MGP_CASTEiJ_P0081472 Leng8 protein_coding protein_coding MGP_CASTEiJ_T0081473.1 MGP_CASTEiJ_G0030605.1 mouse_genomes_project 7 1036015 1038963 + MGP_CASTEiJ_P0081473 Leng8 protein_coding protein_coding MGP_CASTEiJ_T0081474.1 MGP_CASTEiJ_G0030605.1 mouse_genomes_project 7 1036015 1047142 + MGP_CASTEiJ_P0081474 Leng8 protein_coding protein_coding MGP_CASTEiJ_T0081475.1 MGP_CASTEiJ_G0030605.1 mouse_genomes_project 7 1036026 1039415 + MGP_CASTEiJ_P0081475 Leng8 protein_coding protein_coding MGP_CASTEiJ_T0081476.1 MGP_CASTEiJ_G0030605.1 mouse_genomes_project 7 1036032 1047137 + MGP_CASTEiJ_P0081476 Leng8 protein_coding protein_coding MGP_CASTEiJ_T0081477.1 MGP_CASTEiJ_G0030605.1 mouse_genomes_project 7 1036037 1041072 + MGP_CASTEiJ_P0081477 Leng8 protein_coding protein_coding MGP_CASTEiJ_T0081478.1 MGP_CASTEiJ_G0030605.1 mouse_genomes_project 7 1036050 1047138 + Leng8 protein_coding retained_intron MGP_CASTEiJ_T0081479.1 MGP_CASTEiJ_G0030605.1 mouse_genomes_project 7 1036525 1040048 + MGP_CASTEiJ_P0081479 Leng8 protein_coding protein_coding MGP_CASTEiJ_T0081480.1 MGP_CASTEiJ_G0030605.1 mouse_genomes_project 7 1041122 1041894 + Leng8 protein_coding retained_intron MGP_CASTEiJ_T0081481.1 MGP_CASTEiJ_G0030605.1 mouse_genomes_project 7 1043684 1044607 + Leng8 protein_coding retained_intron MGP_CASTEiJ_T0008740.1 MGP_CASTEiJ_G0007060.1 mouse_genomes_project 7 88647848 88650434 - Gm44601 lincRNA lincRNA MGP_CASTEiJ_T0086672.1 MGP_CASTEiJ_G0032022.1 mouse_genomes_project 7 122538784 122544074 + MGP_CASTEiJ_P0086672 Mapk3 protein_coding protein_coding MGP_CASTEiJ_T0086673.1 MGP_CASTEiJ_G0032022.1 mouse_genomes_project 7 122538829 122545075 + MGP_CASTEiJ_P0086673 Mapk3 protein_coding protein_coding MGP_CASTEiJ_T0086674.1 MGP_CASTEiJ_G0032022.1 mouse_genomes_project 7 122538834 122544073 + MGP_CASTEiJ_P0086674 Mapk3 protein_coding protein_coding MGP_CASTEiJ_T0086675.1 MGP_CASTEiJ_G0032022.1 mouse_genomes_project 7 122538843 122540193 + Mapk3 protein_coding retained_intron MGP_CASTEiJ_T0086676.1 MGP_CASTEiJ_G0032022.1 mouse_genomes_project 7 122539017 122542342 + Mapk3 protein_coding processed_transcript MGP_CASTEiJ_T0086677.1 MGP_CASTEiJ_G0032022.1 mouse_genomes_project 7 122539932 122543801 + MGP_CASTEiJ_P0086677 Mapk3 protein_coding protein_coding MGP_CASTEiJ_T0086678.1 MGP_CASTEiJ_G0032022.1 mouse_genomes_project 7 122542459 122543585 + Mapk3 protein_coding retained_intron MGP_CASTEiJ_T0082891.1 MGP_CASTEiJ_G0031014.1 mouse_genomes_project 7 21746467 21754733 - MGP_CASTEiJ_P0082891 Psmd8 protein_coding protein_coding MGP_CASTEiJ_T0082892.1 MGP_CASTEiJ_G0031014.1 mouse_genomes_project 7 21746467 21754761 - MGP_CASTEiJ_P0082892 Psmd8 protein_coding protein_coding MGP_CASTEiJ_T0082893.1 MGP_CASTEiJ_G0031014.1 mouse_genomes_project 7 21746467 21754612 - MGP_CASTEiJ_P0082893 Psmd8 protein_coding protein_coding MGP_CASTEiJ_T0082250.1 MGP_CASTEiJ_G0030852.1 mouse_genomes_project 7 15457640 15465100 + protein_coding processed_transcript MGP_CASTEiJ_T0015333.1 MGP_CASTEiJ_G0013496.1 mouse_genomes_project 7 136654828 136655344 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084734.1 MGP_CASTEiJ_G0031438.1 mouse_genomes_project 7 73558193 73575366 + MGP_CASTEiJ_P0084734 Ttll13 protein_coding protein_coding MGP_CASTEiJ_T0084735.1 MGP_CASTEiJ_G0031438.1 mouse_genomes_project 7 73558242 73558637 + Ttll13 protein_coding retained_intron MGP_CASTEiJ_T0084736.1 MGP_CASTEiJ_G0031438.1 mouse_genomes_project 7 73558372 73573741 + Ttll13 protein_coding retained_intron MGP_CASTEiJ_T0084737.1 MGP_CASTEiJ_G0031438.1 mouse_genomes_project 7 73558827 73567457 + Ttll13 protein_coding retained_intron MGP_CASTEiJ_T0084738.1 MGP_CASTEiJ_G0031438.1 mouse_genomes_project 7 73559219 73575215 + MGP_CASTEiJ_P0084738 Ttll13 protein_coding protein_coding MGP_CASTEiJ_T0086846.1 MGP_CASTEiJ_G0032051.1 mouse_genomes_project 7 123011069 123021912 - MGP_CASTEiJ_P0086846 Tbc1d10b protein_coding protein_coding MGP_CASTEiJ_T0086847.1 MGP_CASTEiJ_G0032051.1 mouse_genomes_project 7 123012328 123017377 - MGP_CASTEiJ_P0086847 Tbc1d10b protein_coding protein_coding MGP_CASTEiJ_T0086848.1 MGP_CASTEiJ_G0032051.1 mouse_genomes_project 7 123012663 123013592 - Tbc1d10b protein_coding retained_intron MGP_CASTEiJ_T0086849.1 MGP_CASTEiJ_G0032051.1 mouse_genomes_project 7 123012968 123021191 - Tbc1d10b protein_coding processed_transcript MGP_CASTEiJ_T0086850.1 MGP_CASTEiJ_G0032051.1 mouse_genomes_project 7 123013428 123014560 - Tbc1d10b protein_coding retained_intron MGP_CASTEiJ_T0086851.1 MGP_CASTEiJ_G0032051.1 mouse_genomes_project 7 123013473 123017278 - Tbc1d10b protein_coding retained_intron MGP_CASTEiJ_T0086852.1 MGP_CASTEiJ_G0032051.1 mouse_genomes_project 7 123013859 123017318 - Tbc1d10b protein_coding retained_intron MGP_CASTEiJ_T0086853.1 MGP_CASTEiJ_G0032051.1 mouse_genomes_project 7 123016578 123017099 - Tbc1d10b protein_coding retained_intron MGP_CASTEiJ_T0083898.1 MGP_CASTEiJ_G0031250.1 mouse_genomes_project 7 37845324 37877155 - MGP_CASTEiJ_P0083898 Ppfia3 protein_coding protein_coding MGP_CASTEiJ_T0083899.1 MGP_CASTEiJ_G0031250.1 mouse_genomes_project 7 37845325 37846971 - Ppfia3 protein_coding processed_transcript MGP_CASTEiJ_T0083900.1 MGP_CASTEiJ_G0031250.1 mouse_genomes_project 7 37845325 37877459 - MGP_CASTEiJ_P0083900 Ppfia3 protein_coding protein_coding MGP_CASTEiJ_T0083901.1 MGP_CASTEiJ_G0031250.1 mouse_genomes_project 7 37845471 37877459 - Ppfia3 protein_coding retained_intron MGP_CASTEiJ_T0083902.1 MGP_CASTEiJ_G0031250.1 mouse_genomes_project 7 37845473 37870132 - MGP_CASTEiJ_P0083902 Ppfia3 protein_coding protein_coding MGP_CASTEiJ_T0083903.1 MGP_CASTEiJ_G0031250.1 mouse_genomes_project 7 37845479 37846962 - Ppfia3 protein_coding processed_transcript MGP_CASTEiJ_T0083904.1 MGP_CASTEiJ_G0031250.1 mouse_genomes_project 7 37846020 37847360 - Ppfia3 protein_coding retained_intron MGP_CASTEiJ_T0081407.1 MGP_CASTEiJ_G0030598.1 mouse_genomes_project 7 544027 549703 - MGP_CASTEiJ_P0081407 Leng1 protein_coding protein_coding MGP_CASTEiJ_T0102478.1 MGP_CASTEiJ_G0039203.1 mouse_genomes_project 7 9598075 9598683 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0084893.1 MGP_CASTEiJ_G0031463.1 mouse_genomes_project 7 74975701 75012078 - MGP_CASTEiJ_P0084893 Fsd2 protein_coding protein_coding MGP_CASTEiJ_T0002202.1 MGP_CASTEiJ_G0002121.1 mouse_genomes_project 7 72708401 72712075 + TEC TEC MGP_CASTEiJ_T0102456.1 MGP_CASTEiJ_G0039181.1 mouse_genomes_project 7 6915823 6916001 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015299.1 MGP_CASTEiJ_G0013462.1 mouse_genomes_project 7 111811498 111811786 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085487.1 MGP_CASTEiJ_G0031619.1 mouse_genomes_project 7 96618911 96624325 - MGP_CASTEiJ_P0085487 Tomt protein_coding protein_coding MGP_CASTEiJ_T0085489.1 MGP_CASTEiJ_G0031619.1 mouse_genomes_project 7 96620356 96626906 - MGP_CASTEiJ_P0085489 Tomt protein_coding protein_coding MGP_CASTEiJ_T0008598.1 MGP_CASTEiJ_G0006959.1 mouse_genomes_project 7 23569854 23573109 + lincRNA lincRNA MGP_CASTEiJ_T0085070.1 MGP_CASTEiJ_G0031533.1 mouse_genomes_project 7 84557989 84560335 + MGP_CASTEiJ_P0085070 Ccdc89 protein_coding protein_coding MGP_CASTEiJ_T0011370.1 MGP_CASTEiJ_G0009558.1 mouse_genomes_project 7 140349745 140350205 + Gm27395 misc_RNA misc_RNA MGP_CASTEiJ_T0084220.1 MGP_CASTEiJ_G0031336.1 mouse_genomes_project 7 44361881 44451954 + MGP_CASTEiJ_P0084220 Ano5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084221.1 MGP_CASTEiJ_G0031336.1 mouse_genomes_project 7 44362626 44456825 + MGP_CASTEiJ_P0084221 Ano5 protein_coding protein_coding MGP_CASTEiJ_T0084222.1 MGP_CASTEiJ_G0031336.1 mouse_genomes_project 7 44362640 44451954 + MGP_CASTEiJ_P0084222 Ano5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0015223.1 MGP_CASTEiJ_G0013386.1 mouse_genomes_project 7 49631800 49632061 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082782.1 MGP_CASTEiJ_G0030991.1 mouse_genomes_project 7 21042514 21046192 - MGP_CASTEiJ_P0082782 Nccrp1 protein_coding protein_coding MGP_CASTEiJ_T0081698.1 MGP_CASTEiJ_G0030671.1 mouse_genomes_project 7 3408006 3409067 + MGP_CASTEiJ_P0081698 Olfr1344 protein_coding protein_coding MGP_CASTEiJ_T0015182.1 MGP_CASTEiJ_G0013345.1 mouse_genomes_project 7 25265230 25265373 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100017.1 MGP_CASTEiJ_G0036930.1 mouse_genomes_project 7 75116420 75116528 + Gm26149 snRNA snRNA MGP_CASTEiJ_T0102551.1 MGP_CASTEiJ_G0039275.1 mouse_genomes_project 7 78463494 78467871 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0087270.1 MGP_CASTEiJ_G0032134.1 mouse_genomes_project 7 127676065 127685794 + MGP_CASTEiJ_P0087270 Hmx2 protein_coding protein_coding MGP_CASTEiJ_T0087271.1 MGP_CASTEiJ_G0032134.1 mouse_genomes_project 7 127681334 127685794 + MGP_CASTEiJ_P0087271 Hmx2 protein_coding protein_coding MGP_CASTEiJ_T0015313.1 MGP_CASTEiJ_G0013476.1 mouse_genomes_project 7 122528711 122529093 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083995.1 MGP_CASTEiJ_G0031271.1 mouse_genomes_project 7 38215272 38221088 + Mamstr protein_coding retained_intron MGP_CASTEiJ_T0083996.1 MGP_CASTEiJ_G0031271.1 mouse_genomes_project 7 38215272 38216294 + Mamstr protein_coding retained_intron MGP_CASTEiJ_T0083997.1 MGP_CASTEiJ_G0031271.1 mouse_genomes_project 7 38215288 38220530 + MGP_CASTEiJ_P0083997 Mamstr protein_coding protein_coding MGP_CASTEiJ_T0083998.1 MGP_CASTEiJ_G0031271.1 mouse_genomes_project 7 38216783 38221840 + Mamstr protein_coding retained_intron MGP_CASTEiJ_T0083999.1 MGP_CASTEiJ_G0031271.1 mouse_genomes_project 7 38217078 38221060 + Mamstr protein_coding retained_intron MGP_CASTEiJ_T0084000.1 MGP_CASTEiJ_G0031271.1 mouse_genomes_project 7 38219702 38220328 + MGP_CASTEiJ_P0084000 Mamstr protein_coding protein_coding MGP_CASTEiJ_T0082018.1 MGP_CASTEiJ_G0030782.1 mouse_genomes_project 7 11936389 11953273 + MGP_CASTEiJ_P0082018 Ceacam3 protein_coding protein_coding MGP_CASTEiJ_T0010533.1 MGP_CASTEiJ_G0008721.1 mouse_genomes_project 7 4244684 4244740 + Mir5620 miRNA miRNA MGP_CASTEiJ_T0008596.1 MGP_CASTEiJ_G0006957.1 mouse_genomes_project 7 22824546 22826789 + lincRNA lincRNA MGP_CASTEiJ_T0002185.1 MGP_CASTEiJ_G0002104.1 mouse_genomes_project 7 66773306 66773463 + TEC TEC MGP_CASTEiJ_T0101279.1 MGP_CASTEiJ_G0038192.1 mouse_genomes_project 7 123381583 123381713 + Snora30 snoRNA snoRNA MGP_CASTEiJ_T0008652.1 MGP_CASTEiJ_G0007002.1 mouse_genomes_project 7 56608459 56615481 + Gm20670 lincRNA lincRNA MGP_CASTEiJ_T0087591.1 MGP_CASTEiJ_G0032228.1 mouse_genomes_project 7 137873239 137879550 + MGP_CASTEiJ_P0087591 Athl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087592.1 MGP_CASTEiJ_G0032228.1 mouse_genomes_project 7 137873414 137879552 + Athl1 protein_coding retained_intron MGP_CASTEiJ_T0087593.1 MGP_CASTEiJ_G0032228.1 mouse_genomes_project 7 137873419 137874975 + Athl1 protein_coding processed_transcript MGP_CASTEiJ_T0087594.1 MGP_CASTEiJ_G0032228.1 mouse_genomes_project 7 137873429 137879558 + MGP_CASTEiJ_P0087594 Athl1 protein_coding protein_coding MGP_CASTEiJ_T0087595.1 MGP_CASTEiJ_G0032228.1 mouse_genomes_project 7 137874162 137878737 + MGP_CASTEiJ_P0087595 Athl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087596.1 MGP_CASTEiJ_G0032228.1 mouse_genomes_project 7 137874388 137879554 + MGP_CASTEiJ_P0087596 Athl1 protein_coding protein_coding MGP_CASTEiJ_T0015225.1 MGP_CASTEiJ_G0013388.1 mouse_genomes_project 7 49678272 49678875 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0087110.1 MGP_CASTEiJ_G0032107.1 mouse_genomes_project 7 124163516 124164586 + Slc5a2 protein_coding retained_intron MGP_CASTEiJ_T0087111.1 MGP_CASTEiJ_G0032107.1 mouse_genomes_project 7 124163535 124170119 + MGP_CASTEiJ_P0087111 Slc5a2 protein_coding protein_coding MGP_CASTEiJ_T0087112.1 MGP_CASTEiJ_G0032107.1 mouse_genomes_project 7 124163537 124169909 + MGP_CASTEiJ_P0087112 Slc5a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087113.1 MGP_CASTEiJ_G0032107.1 mouse_genomes_project 7 124163542 124166994 + MGP_CASTEiJ_P0087113 Slc5a2 protein_coding protein_coding MGP_CASTEiJ_T0087114.1 MGP_CASTEiJ_G0032107.1 mouse_genomes_project 7 124163554 124166998 + MGP_CASTEiJ_P0087114 Slc5a2 protein_coding protein_coding MGP_CASTEiJ_T0087115.1 MGP_CASTEiJ_G0032107.1 mouse_genomes_project 7 124164157 124167734 + MGP_CASTEiJ_P0087115 Slc5a2 protein_coding protein_coding MGP_CASTEiJ_T0087116.1 MGP_CASTEiJ_G0032107.1 mouse_genomes_project 7 124164200 124165343 + MGP_CASTEiJ_P0087116 Slc5a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087117.1 MGP_CASTEiJ_G0032107.1 mouse_genomes_project 7 124164227 124164643 + Slc5a2 protein_coding retained_intron MGP_CASTEiJ_T0087118.1 MGP_CASTEiJ_G0032107.1 mouse_genomes_project 7 124164826 124166847 + Slc5a2 protein_coding retained_intron MGP_CASTEiJ_T0087119.1 MGP_CASTEiJ_G0032107.1 mouse_genomes_project 7 124165255 124167657 + MGP_CASTEiJ_P0087119 Slc5a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087120.1 MGP_CASTEiJ_G0032107.1 mouse_genomes_project 7 124166807 124169876 + MGP_CASTEiJ_P0087120 Slc5a2 protein_coding protein_coding MGP_CASTEiJ_T0087121.1 MGP_CASTEiJ_G0032107.1 mouse_genomes_project 7 124168251 124169876 + MGP_CASTEiJ_P0087121 Slc5a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082246.1 MGP_CASTEiJ_G0030850.1 mouse_genomes_project 7 14849435 14877296 + MGP_CASTEiJ_P0082246 Ceacam20 protein_coding protein_coding MGP_CASTEiJ_T0084619.1 MGP_CASTEiJ_G0031414.1 mouse_genomes_project 7 72109486 72116288 + MGP_CASTEiJ_P0084619 Isg20 protein_coding protein_coding MGP_CASTEiJ_T0084620.1 MGP_CASTEiJ_G0031414.1 mouse_genomes_project 7 72109520 72116378 + MGP_CASTEiJ_P0084620 Isg20 protein_coding protein_coding MGP_CASTEiJ_T0084621.1 MGP_CASTEiJ_G0031414.1 mouse_genomes_project 7 72109827 72116464 + MGP_CASTEiJ_P0084621 Isg20 protein_coding protein_coding MGP_CASTEiJ_T0084622.1 MGP_CASTEiJ_G0031414.1 mouse_genomes_project 7 72110042 72113088 + Isg20 protein_coding retained_intron MGP_CASTEiJ_T0084623.1 MGP_CASTEiJ_G0031414.1 mouse_genomes_project 7 72110296 72116414 + MGP_CASTEiJ_P0084623 Isg20 protein_coding protein_coding MGP_CASTEiJ_T0084624.1 MGP_CASTEiJ_G0031414.1 mouse_genomes_project 7 72110390 72116258 + MGP_CASTEiJ_P0084624 Isg20 protein_coding protein_coding MGP_CASTEiJ_T0010548.1 MGP_CASTEiJ_G0008736.1 mouse_genomes_project 7 21611021 21611087 + Gm44408 miRNA miRNA MGP_CASTEiJ_T0015160.1 MGP_CASTEiJ_G0013323.1 mouse_genomes_project 7 17746291 17747243 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002180.1 MGP_CASTEiJ_G0002100.1 mouse_genomes_project 7 66453446 66455485 - TEC TEC MGP_CASTEiJ_T0084886.1 MGP_CASTEiJ_G0031461.1 mouse_genomes_project 7 74901031 74905925 - Ap3b2 protein_coding retained_intron MGP_CASTEiJ_T0084887.1 MGP_CASTEiJ_G0031461.1 mouse_genomes_project 7 74901033 74935423 - MGP_CASTEiJ_P0084887 Ap3b2 protein_coding protein_coding MGP_CASTEiJ_T0084888.1 MGP_CASTEiJ_G0031461.1 mouse_genomes_project 7 74915009 74935204 - Ap3b2 protein_coding retained_intron MGP_CASTEiJ_T0084889.1 MGP_CASTEiJ_G0031461.1 mouse_genomes_project 7 74917770 74919047 - Ap3b2 protein_coding processed_transcript MGP_CASTEiJ_T0084890.1 MGP_CASTEiJ_G0031461.1 mouse_genomes_project 7 74920296 74935281 - MGP_CASTEiJ_P0084890 Ap3b2 protein_coding protein_coding MGP_CASTEiJ_T0087007.1 MGP_CASTEiJ_G0032083.1 mouse_genomes_project 7 123669277 123690355 - MGP_CASTEiJ_P0087007 Stx1b protein_coding protein_coding MGP_CASTEiJ_T0087008.1 MGP_CASTEiJ_G0032083.1 mouse_genomes_project 7 123672751 123676288 - MGP_CASTEiJ_P0087008 Stx1b protein_coding protein_coding MGP_CASTEiJ_T0081935.1 MGP_CASTEiJ_G0030760.1 mouse_genomes_project 7 11059384 11121964 - MGP_CASTEiJ_P0081935 Sae1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082053.1 MGP_CASTEiJ_G0030798.1 mouse_genomes_project 7 13756379 13759114 + MGP_CASTEiJ_P0082053 Irf2bp1 protein_coding protein_coding MGP_CASTEiJ_T0086185.1 MGP_CASTEiJ_G0031918.1 mouse_genomes_project 7 111826336 111862415 + MGP_CASTEiJ_P0086185 Nucb2 protein_coding protein_coding MGP_CASTEiJ_T0086186.1 MGP_CASTEiJ_G0031918.1 mouse_genomes_project 7 111826351 111833213 + Nucb2 protein_coding processed_transcript MGP_CASTEiJ_T0086187.1 MGP_CASTEiJ_G0031918.1 mouse_genomes_project 7 111826382 111862274 + MGP_CASTEiJ_P0086187 Nucb2 protein_coding protein_coding MGP_CASTEiJ_T0086188.1 MGP_CASTEiJ_G0031918.1 mouse_genomes_project 7 111844936 111861918 + MGP_CASTEiJ_P0086188 Nucb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0086189.1 MGP_CASTEiJ_G0031918.1 mouse_genomes_project 7 111851697 111858942 + MGP_CASTEiJ_P0086189 Nucb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083146.1 MGP_CASTEiJ_G0031071.1 mouse_genomes_project 7 23269249 23279708 - MGP_CASTEiJ_P0083146 Cox6b1 protein_coding protein_coding MGP_CASTEiJ_T0015295.1 MGP_CASTEiJ_G0013458.1 mouse_genomes_project 7 105560979 105561572 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085267.1 MGP_CASTEiJ_G0031576.1 mouse_genomes_project 7 93896476 93977258 + MGP_CASTEiJ_P0085267 Gdpd5 protein_coding protein_coding MGP_CASTEiJ_T0084945.1 MGP_CASTEiJ_G0031479.1 mouse_genomes_project 7 77064521 77076470 - MGP_CASTEiJ_P0084945 protein_coding protein_coding MGP_CASTEiJ_T0084642.1 MGP_CASTEiJ_G0031419.1 mouse_genomes_project 7 72612478 72625616 - MGP_CASTEiJ_P0084642 Rlbp1 protein_coding protein_coding MGP_CASTEiJ_T0084643.1 MGP_CASTEiJ_G0031419.1 mouse_genomes_project 7 72612479 72625527 - MGP_CASTEiJ_P0084643 Rlbp1 protein_coding protein_coding MGP_CASTEiJ_T0084644.1 MGP_CASTEiJ_G0031419.1 mouse_genomes_project 7 72613153 72615329 - Rlbp1 protein_coding retained_intron MGP_CASTEiJ_T0084645.1 MGP_CASTEiJ_G0031419.1 mouse_genomes_project 7 72613529 72622728 - MGP_CASTEiJ_P0084645 Rlbp1 protein_coding protein_coding MGP_CASTEiJ_T0084646.1 MGP_CASTEiJ_G0031419.1 mouse_genomes_project 7 72615009 72625109 - MGP_CASTEiJ_P0084646 Rlbp1 protein_coding protein_coding MGP_CASTEiJ_T0084647.1 MGP_CASTEiJ_G0031419.1 mouse_genomes_project 7 72618839 72625173 - MGP_CASTEiJ_P0084647 Rlbp1 protein_coding protein_coding MGP_CASTEiJ_T0084648.1 MGP_CASTEiJ_G0031419.1 mouse_genomes_project 7 72620423 72625042 - MGP_CASTEiJ_P0084648 Rlbp1 protein_coding protein_coding MGP_CASTEiJ_T0084649.1 MGP_CASTEiJ_G0031419.1 mouse_genomes_project 7 72622472 72625480 - MGP_CASTEiJ_P0084649 Rlbp1 protein_coding protein_coding MGP_CASTEiJ_T0086398.1 MGP_CASTEiJ_G0031975.1 mouse_genomes_project 7 117690568 117705581 + MGP_CASTEiJ_P0086398 Ubfd1 protein_coding protein_coding MGP_CASTEiJ_T0086399.1 MGP_CASTEiJ_G0031975.1 mouse_genomes_project 7 117690601 117701026 + Ubfd1 protein_coding retained_intron MGP_CASTEiJ_T0086400.1 MGP_CASTEiJ_G0031975.1 mouse_genomes_project 7 117690833 117694808 + Ubfd1 protein_coding retained_intron MGP_CASTEiJ_T0086401.1 MGP_CASTEiJ_G0031975.1 mouse_genomes_project 7 117690840 117692373 + Ubfd1 protein_coding processed_transcript MGP_CASTEiJ_T0086402.1 MGP_CASTEiJ_G0031975.1 mouse_genomes_project 7 117692292 117702007 + MGP_CASTEiJ_P0086402 Ubfd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084241.1 MGP_CASTEiJ_G0031344.1 mouse_genomes_project 7 48576872 48581253 + MGP_CASTEiJ_P0084241 Siglech protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084242.1 MGP_CASTEiJ_G0031344.1 mouse_genomes_project 7 48576878 48582207 + MGP_CASTEiJ_P0084242 Siglech protein_coding protein_coding MGP_CASTEiJ_T0084243.1 MGP_CASTEiJ_G0031344.1 mouse_genomes_project 7 48576878 48582207 + MGP_CASTEiJ_P0084243 Siglech protein_coding protein_coding MGP_CASTEiJ_T0084244.1 MGP_CASTEiJ_G0031344.1 mouse_genomes_project 7 48576920 48587730 + MGP_CASTEiJ_P0084244 Siglech protein_coding protein_coding MGP_CASTEiJ_T0084245.1 MGP_CASTEiJ_G0031344.1 mouse_genomes_project 7 48576920 48587508 + MGP_CASTEiJ_P0084245 Siglech protein_coding protein_coding MGP_CASTEiJ_T0084246.1 MGP_CASTEiJ_G0031344.1 mouse_genomes_project 7 48576930 48586330 + MGP_CASTEiJ_P0084246 Siglech protein_coding protein_coding MGP_CASTEiJ_T0084247.1 MGP_CASTEiJ_G0031344.1 mouse_genomes_project 7 48576930 48586277 + MGP_CASTEiJ_P0084247 Siglech protein_coding protein_coding MGP_CASTEiJ_T0084248.1 MGP_CASTEiJ_G0031344.1 mouse_genomes_project 7 48576955 48587810 + MGP_CASTEiJ_P0084248 Siglech protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0100053.1 MGP_CASTEiJ_G0036966.1 mouse_genomes_project 7 139512690 139512798 + Gm26143 snRNA snRNA MGP_CASTEiJ_T0102550.1 MGP_CASTEiJ_G0039274.1 mouse_genomes_project 7 78391781 78392797 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0082942.1 MGP_CASTEiJ_G0031025.1 mouse_genomes_project 7 22404696 22423750 + MGP_CASTEiJ_P0082942 Zfp790 protein_coding protein_coding MGP_CASTEiJ_T0082943.1 MGP_CASTEiJ_G0031025.1 mouse_genomes_project 7 22404696 22423750 + MGP_CASTEiJ_P0082943 Zfp790 protein_coding protein_coding MGP_CASTEiJ_T0083532.1 MGP_CASTEiJ_G0031149.1 mouse_genomes_project 7 33448891 33485058 + MGP_CASTEiJ_P0083532 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083533.1 MGP_CASTEiJ_G0031149.1 mouse_genomes_project 7 33448902 33462815 + protein_coding processed_transcript MGP_CASTEiJ_T0083534.1 MGP_CASTEiJ_G0031149.1 mouse_genomes_project 7 33448933 33482929 + MGP_CASTEiJ_P0083534 protein_coding protein_coding MGP_CASTEiJ_T0083535.1 MGP_CASTEiJ_G0031149.1 mouse_genomes_project 7 33448957 33454346 + protein_coding processed_transcript MGP_CASTEiJ_T0083536.1 MGP_CASTEiJ_G0031149.1 mouse_genomes_project 7 33448996 33465618 + MGP_CASTEiJ_P0083536 protein_coding protein_coding MGP_CASTEiJ_T0083537.1 MGP_CASTEiJ_G0031149.1 mouse_genomes_project 7 33462879 33465641 + protein_coding retained_intron MGP_CASTEiJ_T0083538.1 MGP_CASTEiJ_G0031149.1 mouse_genomes_project 7 33478162 33479109 + protein_coding retained_intron MGP_CASTEiJ_T0083616.1 MGP_CASTEiJ_G0031173.1 mouse_genomes_project 7 35882745 35889090 + MGP_CASTEiJ_P0083616 Klk14 protein_coding protein_coding MGP_CASTEiJ_T0081399.1 MGP_CASTEiJ_G0030597.1 mouse_genomes_project 7 529256 533581 + Cnot3 protein_coding retained_intron MGP_CASTEiJ_T0081400.1 MGP_CASTEiJ_G0030597.1 mouse_genomes_project 7 529278 545039 + Cnot3 protein_coding retained_intron MGP_CASTEiJ_T0081401.1 MGP_CASTEiJ_G0030597.1 mouse_genomes_project 7 529297 535833 + MGP_CASTEiJ_P0081401 Cnot3 protein_coding protein_coding MGP_CASTEiJ_T0081402.1 MGP_CASTEiJ_G0030597.1 mouse_genomes_project 7 529340 545040 + MGP_CASTEiJ_P0081402 Cnot3 protein_coding protein_coding MGP_CASTEiJ_T0081403.1 MGP_CASTEiJ_G0030597.1 mouse_genomes_project 7 535290 539819 + MGP_CASTEiJ_P0081403 Cnot3 protein_coding protein_coding MGP_CASTEiJ_T0081404.1 MGP_CASTEiJ_G0030597.1 mouse_genomes_project 7 535552 542727 + MGP_CASTEiJ_P0081404 Cnot3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081405.1 MGP_CASTEiJ_G0030597.1 mouse_genomes_project 7 542176 545031 + Cnot3 protein_coding retained_intron MGP_CASTEiJ_T0081406.1 MGP_CASTEiJ_G0030597.1 mouse_genomes_project 7 543375 545031 + MGP_CASTEiJ_P0081406 Cnot3 protein_coding protein_coding MGP_CASTEiJ_T0102465.1 MGP_CASTEiJ_G0039190.1 mouse_genomes_project 7 7516919 7517610 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0082070.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13844576 13854581 + MGP_CASTEiJ_P0082070 Dmpk protein_coding protein_coding MGP_CASTEiJ_T0082071.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13844595 13847690 + MGP_CASTEiJ_P0082071 Dmpk protein_coding protein_coding MGP_CASTEiJ_T0082072.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13844597 13854581 + MGP_CASTEiJ_P0082072 Dmpk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082073.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13844612 13854581 + MGP_CASTEiJ_P0082073 Dmpk protein_coding protein_coding MGP_CASTEiJ_T0082074.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13844668 13854581 + MGP_CASTEiJ_P0082074 Dmpk protein_coding protein_coding MGP_CASTEiJ_T0082075.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13845437 13848430 + Dmpk protein_coding processed_transcript MGP_CASTEiJ_T0082076.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13847227 13854579 + Dmpk protein_coding retained_intron MGP_CASTEiJ_T0082077.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13847227 13854579 + Dmpk protein_coding processed_transcript MGP_CASTEiJ_T0082078.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13847227 13854579 + Dmpk protein_coding retained_intron MGP_CASTEiJ_T0082079.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13847997 13849862 + Dmpk protein_coding processed_transcript MGP_CASTEiJ_T0082080.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13848221 13849360 + Dmpk protein_coding processed_transcript MGP_CASTEiJ_T0082081.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13848339 13852490 + Dmpk protein_coding processed_transcript MGP_CASTEiJ_T0082082.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13848474 13850088 + Dmpk protein_coding retained_intron MGP_CASTEiJ_T0082083.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13848913 13853767 + Dmpk protein_coding processed_transcript MGP_CASTEiJ_T0082084.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13852206 13853084 + Dmpk protein_coding retained_intron MGP_CASTEiJ_T0082085.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13852339 13853258 + Dmpk protein_coding processed_transcript MGP_CASTEiJ_T0082086.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13852940 13854531 + Dmpk protein_coding processed_transcript MGP_CASTEiJ_T0082087.1 MGP_CASTEiJ_G0030803.1 mouse_genomes_project 7 13853018 13853964 + Dmpk protein_coding retained_intron MGP_CASTEiJ_T0008593.1 MGP_CASTEiJ_G0006954.1 mouse_genomes_project 7 18175143 18185749 + Gm30146 lincRNA lincRNA MGP_CASTEiJ_T0015305.1 MGP_CASTEiJ_G0013468.1 mouse_genomes_project 7 118701767 118702277 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099996.1 MGP_CASTEiJ_G0036909.1 mouse_genomes_project 7 11738140 11738281 - Gm25815 snRNA snRNA MGP_CASTEiJ_T0015153.1 MGP_CASTEiJ_G0013316.1 mouse_genomes_project 7 16484431 16484872 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081597.1 MGP_CASTEiJ_G0030628.1 mouse_genomes_project 7 1708206 1709611 + MGP_CASTEiJ_P0081597 Tmem190 protein_coding protein_coding MGP_CASTEiJ_T0081598.1 MGP_CASTEiJ_G0030628.1 mouse_genomes_project 7 1708220 1708628 + Tmem190 protein_coding retained_intron MGP_CASTEiJ_T0082517.1 MGP_CASTEiJ_G0030921.1 mouse_genomes_project 7 17990662 18010453 + MGP_CASTEiJ_P0082517 Tgfb1 protein_coding protein_coding MGP_CASTEiJ_T0082518.1 MGP_CASTEiJ_G0030921.1 mouse_genomes_project 7 17991817 17992399 + Tgfb1 protein_coding processed_transcript MGP_CASTEiJ_T0082519.1 MGP_CASTEiJ_G0030921.1 mouse_genomes_project 7 17992564 17995121 + Tgfb1 protein_coding retained_intron MGP_CASTEiJ_T0082520.1 MGP_CASTEiJ_G0030921.1 mouse_genomes_project 7 17992601 18000934 + MGP_CASTEiJ_P0082520 Tgfb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082521.1 MGP_CASTEiJ_G0030921.1 mouse_genomes_project 7 17996108 18000895 + Tgfb1 protein_coding retained_intron MGP_CASTEiJ_T0005014.1 MGP_CASTEiJ_G0004283.1 mouse_genomes_project 7 13740259 13741027 - Gm45058 antisense antisense MGP_CASTEiJ_T0085835.1 MGP_CASTEiJ_G0031795.1 mouse_genomes_project 7 101610220 101611168 - MGP_CASTEiJ_P0085835 Olfr694 protein_coding protein_coding MGP_CASTEiJ_T0083755.1 MGP_CASTEiJ_G0031209.1 mouse_genomes_project 7 37119586 37120857 + MGP_CASTEiJ_P0083755 protein_coding protein_coding MGP_CASTEiJ_T0083082.1 MGP_CASTEiJ_G0031062.1 mouse_genomes_project 7 23185737 23200595 - MGP_CASTEiJ_P0083082 Proser3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083083.1 MGP_CASTEiJ_G0031062.1 mouse_genomes_project 7 23185744 23200606 - MGP_CASTEiJ_P0083083 Proser3 protein_coding protein_coding MGP_CASTEiJ_T0083084.1 MGP_CASTEiJ_G0031062.1 mouse_genomes_project 7 23186127 23196540 - MGP_CASTEiJ_P0083084 Proser3 protein_coding protein_coding MGP_CASTEiJ_T0083085.1 MGP_CASTEiJ_G0031062.1 mouse_genomes_project 7 23189054 23200630 - Proser3 protein_coding retained_intron MGP_CASTEiJ_T0083086.1 MGP_CASTEiJ_G0031062.1 mouse_genomes_project 7 23195927 23200626 - MGP_CASTEiJ_P0083086 Proser3 protein_coding protein_coding MGP_CASTEiJ_T0085305.1 MGP_CASTEiJ_G0031589.1 mouse_genomes_project 7 94653003 94693136 - MGP_CASTEiJ_P0085305 Pold3 protein_coding protein_coding MGP_CASTEiJ_T0085306.1 MGP_CASTEiJ_G0031589.1 mouse_genomes_project 7 94654286 94693026 - MGP_CASTEiJ_P0085306 Pold3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085307.1 MGP_CASTEiJ_G0031589.1 mouse_genomes_project 7 94654476 94664299 - Pold3 protein_coding retained_intron MGP_CASTEiJ_T0085308.1 MGP_CASTEiJ_G0031589.1 mouse_genomes_project 7 94654555 94660668 - Pold3 protein_coding retained_intron MGP_CASTEiJ_T0085309.1 MGP_CASTEiJ_G0031589.1 mouse_genomes_project 7 94666942 94671278 - Pold3 protein_coding retained_intron MGP_CASTEiJ_T0085310.1 MGP_CASTEiJ_G0031589.1 mouse_genomes_project 7 94669612 94671151 - Pold3 protein_coding retained_intron MGP_CASTEiJ_T0085311.1 MGP_CASTEiJ_G0031589.1 mouse_genomes_project 7 94670139 94693029 - Pold3 protein_coding processed_transcript MGP_CASTEiJ_T0085312.1 MGP_CASTEiJ_G0031589.1 mouse_genomes_project 7 94683835 94691474 - Pold3 protein_coding processed_transcript MGP_CASTEiJ_T0087710.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138426019 138434163 - MGP_CASTEiJ_P0087710 Slc25a22 protein_coding protein_coding MGP_CASTEiJ_T0087711.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138426024 138434098 - Slc25a22 protein_coding retained_intron MGP_CASTEiJ_T0087712.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138426024 138433902 - MGP_CASTEiJ_P0087712 Slc25a22 protein_coding protein_coding MGP_CASTEiJ_T0087713.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138426024 138433908 - MGP_CASTEiJ_P0087713 Slc25a22 protein_coding protein_coding MGP_CASTEiJ_T0087714.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138426024 138430870 - MGP_CASTEiJ_P0087714 Slc25a22 protein_coding protein_coding MGP_CASTEiJ_T0087715.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138426027 138431617 - Slc25a22 protein_coding retained_intron MGP_CASTEiJ_T0087716.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138426027 138433909 - MGP_CASTEiJ_P0087716 Slc25a22 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087717.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138426031 138429028 - MGP_CASTEiJ_P0087717 Slc25a22 protein_coding protein_coding MGP_CASTEiJ_T0087718.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138427229 138428314 - Slc25a22 protein_coding retained_intron MGP_CASTEiJ_T0087719.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138427295 138428335 - Slc25a22 protein_coding retained_intron MGP_CASTEiJ_T0087720.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138427461 138427874 - MGP_CASTEiJ_P0087720 Slc25a22 protein_coding protein_coding MGP_CASTEiJ_T0087721.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138427643 138429123 - Slc25a22 protein_coding retained_intron MGP_CASTEiJ_T0087722.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138427851 138431673 - MGP_CASTEiJ_P0087722 Slc25a22 protein_coding protein_coding MGP_CASTEiJ_T0087723.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138427901 138430699 - MGP_CASTEiJ_P0087723 Slc25a22 protein_coding protein_coding MGP_CASTEiJ_T0087724.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138427914 138430591 - MGP_CASTEiJ_P0087724 Slc25a22 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087725.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138427918 138430283 - MGP_CASTEiJ_P0087725 Slc25a22 protein_coding protein_coding MGP_CASTEiJ_T0087726.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138428168 138430246 - Slc25a22 protein_coding retained_intron MGP_CASTEiJ_T0087727.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138428182 138433864 - MGP_CASTEiJ_P0087727 Slc25a22 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087728.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138428320 138431599 - Slc25a22 protein_coding processed_transcript MGP_CASTEiJ_T0087729.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138428386 138433863 - MGP_CASTEiJ_P0087729 Slc25a22 protein_coding protein_coding MGP_CASTEiJ_T0087730.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138428859 138431600 - Slc25a22 protein_coding retained_intron MGP_CASTEiJ_T0087731.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138428975 138430876 - MGP_CASTEiJ_P0087731 Slc25a22 protein_coding protein_coding MGP_CASTEiJ_T0087732.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138429872 138430880 - MGP_CASTEiJ_P0087732 Slc25a22 protein_coding protein_coding MGP_CASTEiJ_T0087733.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138430205 138430819 - MGP_CASTEiJ_P0087733 Slc25a22 protein_coding protein_coding MGP_CASTEiJ_T0087734.1 MGP_CASTEiJ_G0032256.1 mouse_genomes_project 7 138430237 138430870 - MGP_CASTEiJ_P0087734 Slc25a22 protein_coding protein_coding MGP_CASTEiJ_T0008781.1 MGP_CASTEiJ_G0007087.1 mouse_genomes_project 7 121078507 121080670 + 4930571K23Rik lincRNA lincRNA MGP_CASTEiJ_T0008782.1 MGP_CASTEiJ_G0007087.1 mouse_genomes_project 7 121078658 121080664 + 4930571K23Rik lincRNA lincRNA MGP_CASTEiJ_T0011361.1 MGP_CASTEiJ_G0009549.1 mouse_genomes_project 7 98054509 98054831 + Gm23973 misc_RNA misc_RNA MGP_CASTEiJ_T0005090.1 MGP_CASTEiJ_G0004339.1 mouse_genomes_project 7 71761576 71763791 + Gm9885 antisense antisense MGP_CASTEiJ_T0005091.1 MGP_CASTEiJ_G0004339.1 mouse_genomes_project 7 71761576 71763787 + Gm9885 antisense antisense MGP_CASTEiJ_T0081641.1 MGP_CASTEiJ_G0030647.1 mouse_genomes_project 7 2005120 2007309 + MGP_CASTEiJ_P0081641 Zfp580 protein_coding protein_coding MGP_CASTEiJ_T0085772.1 MGP_CASTEiJ_G0031783.1 mouse_genomes_project 7 100752537 100758795 - MGP_CASTEiJ_P0085772 Arfip2 protein_coding protein_coding MGP_CASTEiJ_T0085773.1 MGP_CASTEiJ_G0031783.1 mouse_genomes_project 7 100752542 100758293 - Arfip2 protein_coding retained_intron MGP_CASTEiJ_T0085774.1 MGP_CASTEiJ_G0031783.1 mouse_genomes_project 7 100753956 100758693 - MGP_CASTEiJ_P0085774 Arfip2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085775.1 MGP_CASTEiJ_G0031783.1 mouse_genomes_project 7 100753959 100756233 - Arfip2 protein_coding processed_transcript MGP_CASTEiJ_T0085776.1 MGP_CASTEiJ_G0031783.1 mouse_genomes_project 7 100753991 100758716 - MGP_CASTEiJ_P0085776 Arfip2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085777.1 MGP_CASTEiJ_G0031783.1 mouse_genomes_project 7 100753992 100758730 - MGP_CASTEiJ_P0085777 Arfip2 protein_coding protein_coding MGP_CASTEiJ_T0085778.1 MGP_CASTEiJ_G0031783.1 mouse_genomes_project 7 100755232 100756376 - Arfip2 protein_coding processed_transcript MGP_CASTEiJ_T0085779.1 MGP_CASTEiJ_G0031783.1 mouse_genomes_project 7 100755450 100756246 - Arfip2 protein_coding processed_transcript MGP_CASTEiJ_T0085780.1 MGP_CASTEiJ_G0031783.1 mouse_genomes_project 7 100755518 100758687 - MGP_CASTEiJ_P0085780 Arfip2 protein_coding protein_coding MGP_CASTEiJ_T0085781.1 MGP_CASTEiJ_G0031783.1 mouse_genomes_project 7 100756178 100758714 - MGP_CASTEiJ_P0085781 Arfip2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085782.1 MGP_CASTEiJ_G0031783.1 mouse_genomes_project 7 100756966 100758719 - Arfip2 protein_coding retained_intron MGP_CASTEiJ_T0098649.1 MGP_CASTEiJ_G0035580.1 mouse_genomes_project 7 91265015 91265108 - Gm25712 rRNA rRNA MGP_CASTEiJ_T0085687.1 MGP_CASTEiJ_G0031738.1 mouse_genomes_project 7 99327597 99338126 - MGP_CASTEiJ_P0085687 Trim30c protein_coding protein_coding MGP_CASTEiJ_T0010564.1 MGP_CASTEiJ_G0008752.1 mouse_genomes_project 7 39784041 39784100 - Mir7056 miRNA miRNA MGP_CASTEiJ_T0010540.1 MGP_CASTEiJ_G0008728.1 mouse_genomes_project 7 17236537 17236603 - Mir7046 miRNA miRNA MGP_CASTEiJ_T0082701.1 MGP_CASTEiJ_G0030966.1 mouse_genomes_project 7 20297901 20310357 + MGP_CASTEiJ_P0082701 Zfp59 protein_coding protein_coding MGP_CASTEiJ_T0081841.1 MGP_CASTEiJ_G0030730.1 mouse_genomes_project 7 8451626 8488415 + MGP_CASTEiJ_P0081841 Pla2g4c protein_coding protein_coding MGP_CASTEiJ_T0081842.1 MGP_CASTEiJ_G0030730.1 mouse_genomes_project 7 8451812 8500917 + MGP_CASTEiJ_P0081842 Pla2g4c protein_coding unknown_likely_coding MGP_CASTEiJ_T0081843.1 MGP_CASTEiJ_G0030730.1 mouse_genomes_project 7 8452635 8489902 + MGP_CASTEiJ_P0081843 Pla2g4c protein_coding protein_coding MGP_CASTEiJ_T0081844.1 MGP_CASTEiJ_G0030730.1 mouse_genomes_project 7 8454812 8489906 + MGP_CASTEiJ_P0081844 Pla2g4c protein_coding protein_coding MGP_CASTEiJ_T0101243.1 MGP_CASTEiJ_G0038156.1 mouse_genomes_project 7 52154051 52154130 - snoRNA snoRNA MGP_CASTEiJ_T0081415.1 MGP_CASTEiJ_G0030600.1 mouse_genomes_project 7 561546 576851 - MGP_CASTEiJ_P0081415 Mboat7 protein_coding protein_coding MGP_CASTEiJ_T0081416.1 MGP_CASTEiJ_G0030600.1 mouse_genomes_project 7 561550 575455 - MGP_CASTEiJ_P0081416 Mboat7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081417.1 MGP_CASTEiJ_G0030600.1 mouse_genomes_project 7 562159 575204 - MGP_CASTEiJ_P0081417 Mboat7 protein_coding protein_coding MGP_CASTEiJ_T0081418.1 MGP_CASTEiJ_G0030600.1 mouse_genomes_project 7 562532 567970 - Mboat7 protein_coding retained_intron MGP_CASTEiJ_T0081419.1 MGP_CASTEiJ_G0030600.1 mouse_genomes_project 7 566800 576293 - Mboat7 protein_coding retained_intron MGP_CASTEiJ_T0081420.1 MGP_CASTEiJ_G0030600.1 mouse_genomes_project 7 569038 577353 - MGP_CASTEiJ_P0081420 Mboat7 protein_coding protein_coding MGP_CASTEiJ_T0081421.1 MGP_CASTEiJ_G0030600.1 mouse_genomes_project 7 569393 576229 - MGP_CASTEiJ_P0081421 Mboat7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081422.1 MGP_CASTEiJ_G0030600.1 mouse_genomes_project 7 569409 576229 - MGP_CASTEiJ_P0081422 Mboat7 protein_coding protein_coding MGP_CASTEiJ_T0081423.1 MGP_CASTEiJ_G0030600.1 mouse_genomes_project 7 571978 576103 - MGP_CASTEiJ_P0081423 Mboat7 protein_coding protein_coding MGP_CASTEiJ_T0081424.1 MGP_CASTEiJ_G0030600.1 mouse_genomes_project 7 572404 576303 - Mboat7 protein_coding retained_intron MGP_CASTEiJ_T0081425.1 MGP_CASTEiJ_G0030600.1 mouse_genomes_project 7 572702 576121 - Mboat7 protein_coding retained_intron MGP_CASTEiJ_T0081426.1 MGP_CASTEiJ_G0030600.1 mouse_genomes_project 7 573241 576279 - Mboat7 protein_coding retained_intron MGP_CASTEiJ_T0081427.1 MGP_CASTEiJ_G0030600.1 mouse_genomes_project 7 575037 575995 - Mboat7 protein_coding retained_intron MGP_CASTEiJ_T0081565.1 MGP_CASTEiJ_G0030622.1 mouse_genomes_project 7 1604240 1631001 + MGP_CASTEiJ_P0081565 Brsk1 protein_coding protein_coding MGP_CASTEiJ_T0081566.1 MGP_CASTEiJ_G0030622.1 mouse_genomes_project 7 1604565 1631017 + MGP_CASTEiJ_P0081566 Brsk1 protein_coding protein_coding MGP_CASTEiJ_T0081567.1 MGP_CASTEiJ_G0030622.1 mouse_genomes_project 7 1604717 1620419 + MGP_CASTEiJ_P0081567 Brsk1 protein_coding protein_coding MGP_CASTEiJ_T0081568.1 MGP_CASTEiJ_G0030622.1 mouse_genomes_project 7 1607338 1620419 + MGP_CASTEiJ_P0081568 Brsk1 protein_coding protein_coding MGP_CASTEiJ_T0081570.1 MGP_CASTEiJ_G0030622.1 mouse_genomes_project 7 1623982 1625921 + MGP_CASTEiJ_P0081570 Brsk1 protein_coding protein_coding MGP_CASTEiJ_T0015303.1 MGP_CASTEiJ_G0013466.1 mouse_genomes_project 7 118144259 118144500 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102481.1 MGP_CASTEiJ_G0039206.1 mouse_genomes_project 7 9598195 9598592 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102547.1 MGP_CASTEiJ_G0039271.1 mouse_genomes_project 7 41446716 41447500 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008599.1 MGP_CASTEiJ_G0006960.1 mouse_genomes_project 7 23608994 23646285 + Gm44662 lincRNA lincRNA MGP_CASTEiJ_T0101263.1 MGP_CASTEiJ_G0038176.1 mouse_genomes_project 7 100760713 100760852 - Gm22504 snoRNA snoRNA MGP_CASTEiJ_T0087076.1 MGP_CASTEiJ_G0032097.1 mouse_genomes_project 7 123945851 124004522 + MGP_CASTEiJ_P0087076 protein_coding protein_coding MGP_CASTEiJ_T0087077.1 MGP_CASTEiJ_G0032097.1 mouse_genomes_project 7 123945880 124004521 + MGP_CASTEiJ_P0087077 protein_coding protein_coding MGP_CASTEiJ_T0087078.1 MGP_CASTEiJ_G0032097.1 mouse_genomes_project 7 123945890 124003111 + MGP_CASTEiJ_P0087078 protein_coding protein_coding MGP_CASTEiJ_T0087079.1 MGP_CASTEiJ_G0032097.1 mouse_genomes_project 7 123945894 124003582 + MGP_CASTEiJ_P0087079 protein_coding protein_coding MGP_CASTEiJ_T0087081.1 MGP_CASTEiJ_G0032097.1 mouse_genomes_project 7 123945939 123957050 + protein_coding processed_transcript MGP_CASTEiJ_T0087082.1 MGP_CASTEiJ_G0032097.1 mouse_genomes_project 7 123945954 123957292 + MGP_CASTEiJ_P0087082 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084867.1 MGP_CASTEiJ_G0031457.1 mouse_genomes_project 7 74509072 74571891 + MGP_CASTEiJ_P0084867 Slc28a1 protein_coding protein_coding MGP_CASTEiJ_T0084868.1 MGP_CASTEiJ_G0031457.1 mouse_genomes_project 7 74509123 74571891 + MGP_CASTEiJ_P0084868 Slc28a1 protein_coding protein_coding MGP_CASTEiJ_T0081534.1 MGP_CASTEiJ_G0030615.1 mouse_genomes_project 7 1415389 1416988 - Tnni3 protein_coding retained_intron MGP_CASTEiJ_T0081535.1 MGP_CASTEiJ_G0030615.1 mouse_genomes_project 7 1415389 1420726 - MGP_CASTEiJ_P0081535 Tnni3 protein_coding protein_coding MGP_CASTEiJ_T0081536.1 MGP_CASTEiJ_G0030615.1 mouse_genomes_project 7 1415392 1418726 - Tnni3 protein_coding retained_intron MGP_CASTEiJ_T0081537.1 MGP_CASTEiJ_G0030615.1 mouse_genomes_project 7 1418596 1420996 - MGP_CASTEiJ_P0081537 Tnni3 protein_coding protein_coding MGP_CASTEiJ_T0081538.1 MGP_CASTEiJ_G0030615.1 mouse_genomes_project 7 1418635 1422433 - MGP_CASTEiJ_P0081538 Tnni3 protein_coding protein_coding MGP_CASTEiJ_T0081539.1 MGP_CASTEiJ_G0030615.1 mouse_genomes_project 7 1419200 1420640 - Tnni3 protein_coding retained_intron MGP_CASTEiJ_T0081540.1 MGP_CASTEiJ_G0030615.1 mouse_genomes_project 7 1419546 1420690 - Tnni3 protein_coding retained_intron MGP_CASTEiJ_T0083417.1 MGP_CASTEiJ_G0031127.1 mouse_genomes_project 7 26727413 26770531 + MGP_CASTEiJ_P0083417 Cep89 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083418.1 MGP_CASTEiJ_G0031127.1 mouse_genomes_project 7 26727433 26770533 + MGP_CASTEiJ_P0083418 Cep89 protein_coding protein_coding MGP_CASTEiJ_T0083419.1 MGP_CASTEiJ_G0031127.1 mouse_genomes_project 7 26727484 26741415 + Cep89 protein_coding retained_intron MGP_CASTEiJ_T0083420.1 MGP_CASTEiJ_G0031127.1 mouse_genomes_project 7 26727493 26740069 + Cep89 protein_coding processed_transcript MGP_CASTEiJ_T0083421.1 MGP_CASTEiJ_G0031127.1 mouse_genomes_project 7 26727507 26740052 + MGP_CASTEiJ_P0083421 Cep89 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083422.1 MGP_CASTEiJ_G0031127.1 mouse_genomes_project 7 26727545 26770412 + MGP_CASTEiJ_P0083422 Cep89 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083423.1 MGP_CASTEiJ_G0031127.1 mouse_genomes_project 7 26746683 26748679 + Cep89 protein_coding processed_transcript MGP_CASTEiJ_T0083424.1 MGP_CASTEiJ_G0031127.1 mouse_genomes_project 7 26746760 26751531 + Cep89 protein_coding retained_intron MGP_CASTEiJ_T0083425.1 MGP_CASTEiJ_G0031127.1 mouse_genomes_project 7 26748177 26760735 + MGP_CASTEiJ_P0083425 Cep89 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083426.1 MGP_CASTEiJ_G0031127.1 mouse_genomes_project 7 26748699 26760206 + Cep89 protein_coding processed_transcript MGP_CASTEiJ_T0083427.1 MGP_CASTEiJ_G0031127.1 mouse_genomes_project 7 26758315 26764940 + Cep89 protein_coding retained_intron MGP_CASTEiJ_T0083428.1 MGP_CASTEiJ_G0031127.1 mouse_genomes_project 7 26760842 26770525 + MGP_CASTEiJ_P0083428 Cep89 protein_coding protein_coding MGP_CASTEiJ_T0002233.1 MGP_CASTEiJ_G0002152.1 mouse_genomes_project 7 121794109 121795647 - TEC TEC MGP_CASTEiJ_T0087986.1 MGP_CASTEiJ_G0032302.1 mouse_genomes_project 7 140928680 140934731 - MGP_CASTEiJ_P0087986 Mrgpre protein_coding protein_coding MGP_CASTEiJ_T0087545.1 MGP_CASTEiJ_G0032216.1 mouse_genomes_project 7 137686610 137697986 + MGP_CASTEiJ_P0087545 Cyp2e1 protein_coding protein_coding MGP_CASTEiJ_T0010552.1 MGP_CASTEiJ_G0008740.1 mouse_genomes_project 7 22708334 22708430 - Gm23368 miRNA miRNA MGP_CASTEiJ_T0084142.1 MGP_CASTEiJ_G0031307.1 mouse_genomes_project 7 39542270 39560615 + MGP_CASTEiJ_P0084142 Ldhc protein_coding protein_coding MGP_CASTEiJ_T0084143.1 MGP_CASTEiJ_G0031307.1 mouse_genomes_project 7 39542389 39558281 + MGP_CASTEiJ_P0084143 Ldhc protein_coding protein_coding MGP_CASTEiJ_T0084144.1 MGP_CASTEiJ_G0031307.1 mouse_genomes_project 7 39542497 39558946 + MGP_CASTEiJ_P0084144 Ldhc protein_coding protein_coding MGP_CASTEiJ_T0008690.1 MGP_CASTEiJ_G0007031.1 mouse_genomes_project 7 66637535 66646478 + Gm44737 lincRNA lincRNA MGP_CASTEiJ_T0015186.1 MGP_CASTEiJ_G0013349.1 mouse_genomes_project 7 27640408 27642227 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002207.1 MGP_CASTEiJ_G0002126.1 mouse_genomes_project 7 73098130 73099417 - TEC TEC MGP_CASTEiJ_T0087224.1 MGP_CASTEiJ_G0032122.1 mouse_genomes_project 7 126900705 126953237 + MGP_CASTEiJ_P0087224 Plekha1 protein_coding protein_coding MGP_CASTEiJ_T0087225.1 MGP_CASTEiJ_G0032122.1 mouse_genomes_project 7 126900834 126932025 + Plekha1 protein_coding retained_intron MGP_CASTEiJ_T0087226.1 MGP_CASTEiJ_G0032122.1 mouse_genomes_project 7 126900836 126913653 + Plekha1 protein_coding retained_intron MGP_CASTEiJ_T0087227.1 MGP_CASTEiJ_G0032122.1 mouse_genomes_project 7 126900847 126952000 + MGP_CASTEiJ_P0087227 Plekha1 protein_coding protein_coding MGP_CASTEiJ_T0087228.1 MGP_CASTEiJ_G0032122.1 mouse_genomes_project 7 126900852 126949772 + MGP_CASTEiJ_P0087228 Plekha1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087229.1 MGP_CASTEiJ_G0032122.1 mouse_genomes_project 7 126900859 126953227 + MGP_CASTEiJ_P0087229 Plekha1 protein_coding protein_coding MGP_CASTEiJ_T0087230.1 MGP_CASTEiJ_G0032122.1 mouse_genomes_project 7 126919026 126922168 + Plekha1 protein_coding retained_intron MGP_CASTEiJ_T0087231.1 MGP_CASTEiJ_G0032122.1 mouse_genomes_project 7 126934231 126944854 + Plekha1 protein_coding retained_intron MGP_CASTEiJ_T0087232.1 MGP_CASTEiJ_G0032122.1 mouse_genomes_project 7 126938145 126949627 + Plekha1 protein_coding processed_transcript MGP_CASTEiJ_T0087233.1 MGP_CASTEiJ_G0032122.1 mouse_genomes_project 7 126941671 126948855 + Plekha1 protein_coding retained_intron MGP_CASTEiJ_T0087234.1 MGP_CASTEiJ_G0032122.1 mouse_genomes_project 7 126944331 126951094 + MGP_CASTEiJ_P0087234 Plekha1 protein_coding protein_coding MGP_CASTEiJ_T0087235.1 MGP_CASTEiJ_G0032122.1 mouse_genomes_project 7 126944731 126950832 + Plekha1 protein_coding retained_intron MGP_CASTEiJ_T0082035.1 MGP_CASTEiJ_G0030793.1 mouse_genomes_project 7 13613021 13632163 + Pglyrp1 protein_coding processed_transcript MGP_CASTEiJ_T0082036.1 MGP_CASTEiJ_G0030793.1 mouse_genomes_project 7 13613021 13631102 + Pglyrp1 protein_coding processed_transcript MGP_CASTEiJ_T0082037.1 MGP_CASTEiJ_G0030793.1 mouse_genomes_project 7 13626359 13632145 + MGP_CASTEiJ_P0082037 Pglyrp1 protein_coding protein_coding MGP_CASTEiJ_T0082038.1 MGP_CASTEiJ_G0030793.1 mouse_genomes_project 7 13626372 13627383 + Pglyrp1 protein_coding retained_intron MGP_CASTEiJ_T0083194.1 MGP_CASTEiJ_G0031084.1 mouse_genomes_project 7 23533379 23535222 - MGP_CASTEiJ_P0083194 Ffar3 protein_coding protein_coding MGP_CASTEiJ_T0083195.1 MGP_CASTEiJ_G0031084.1 mouse_genomes_project 7 23533977 23535211 - MGP_CASTEiJ_P0083195 Ffar3 protein_coding protein_coding MGP_CASTEiJ_T0082707.1 MGP_CASTEiJ_G0030970.1 mouse_genomes_project 7 20507111 20515510 - MGP_CASTEiJ_P0082707 Psmc4 protein_coding protein_coding MGP_CASTEiJ_T0082708.1 MGP_CASTEiJ_G0030970.1 mouse_genomes_project 7 20507120 20512425 - Psmc4 protein_coding retained_intron MGP_CASTEiJ_T0082709.1 MGP_CASTEiJ_G0030970.1 mouse_genomes_project 7 20507121 20515465 - Psmc4 protein_coding retained_intron MGP_CASTEiJ_T0082710.1 MGP_CASTEiJ_G0030970.1 mouse_genomes_project 7 20507992 20512752 - Psmc4 protein_coding retained_intron MGP_CASTEiJ_T0082711.1 MGP_CASTEiJ_G0030970.1 mouse_genomes_project 7 20508069 20512921 - Psmc4 protein_coding processed_transcript MGP_CASTEiJ_T0082712.1 MGP_CASTEiJ_G0030970.1 mouse_genomes_project 7 20512659 20515465 - Psmc4 protein_coding retained_intron MGP_CASTEiJ_T0082489.1 MGP_CASTEiJ_G0030915.1 mouse_genomes_project 7 17919988 17926120 + MGP_CASTEiJ_P0082489 Atp5sl protein_coding protein_coding MGP_CASTEiJ_T0082490.1 MGP_CASTEiJ_G0030915.1 mouse_genomes_project 7 17919998 17921112 + Atp5sl protein_coding retained_intron MGP_CASTEiJ_T0082491.1 MGP_CASTEiJ_G0030915.1 mouse_genomes_project 7 17920067 17926117 + MGP_CASTEiJ_P0082491 Atp5sl protein_coding protein_coding MGP_CASTEiJ_T0082492.1 MGP_CASTEiJ_G0030915.1 mouse_genomes_project 7 17921109 17922977 + Atp5sl protein_coding retained_intron MGP_CASTEiJ_T0082493.1 MGP_CASTEiJ_G0030915.1 mouse_genomes_project 7 17921467 17924651 + MGP_CASTEiJ_P0082493 Atp5sl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082494.1 MGP_CASTEiJ_G0030915.1 mouse_genomes_project 7 17921474 17922574 + Atp5sl protein_coding processed_transcript MGP_CASTEiJ_T0098645.1 MGP_CASTEiJ_G0035576.1 mouse_genomes_project 7 58968112 58968202 - Gm23957 rRNA rRNA MGP_CASTEiJ_T0102597.1 MGP_CASTEiJ_G0039321.1 mouse_genomes_project 7 99706303 99707269 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008816.1 MGP_CASTEiJ_G0007111.1 mouse_genomes_project 7 129892698 129894082 - Gm28747 lincRNA lincRNA MGP_CASTEiJ_T0087676.1 MGP_CASTEiJ_G0032249.1 mouse_genomes_project 7 138270588 138273597 + MGP_CASTEiJ_P0087676 Drd4 protein_coding protein_coding MGP_CASTEiJ_T0087447.1 MGP_CASTEiJ_G0032177.1 mouse_genomes_project 7 136224983 136433284 + MGP_CASTEiJ_P0087447 Inpp5a protein_coding protein_coding MGP_CASTEiJ_T0087448.1 MGP_CASTEiJ_G0032177.1 mouse_genomes_project 7 136224984 136433284 + MGP_CASTEiJ_P0087448 Inpp5a protein_coding protein_coding MGP_CASTEiJ_T0087449.1 MGP_CASTEiJ_G0032177.1 mouse_genomes_project 7 136225161 136433543 + MGP_CASTEiJ_P0087449 Inpp5a protein_coding unknown_likely_coding MGP_CASTEiJ_T0087450.1 MGP_CASTEiJ_G0032177.1 mouse_genomes_project 7 136238265 136432857 + MGP_CASTEiJ_P0087450 Inpp5a protein_coding protein_coding MGP_CASTEiJ_T0087451.1 MGP_CASTEiJ_G0032177.1 mouse_genomes_project 7 136301127 136359379 + Inpp5a protein_coding processed_transcript MGP_CASTEiJ_T0087452.1 MGP_CASTEiJ_G0032177.1 mouse_genomes_project 7 136329736 136346264 + Inpp5a protein_coding processed_transcript MGP_CASTEiJ_T0087453.1 MGP_CASTEiJ_G0032177.1 mouse_genomes_project 7 136371773 136428836 + Inpp5a protein_coding processed_transcript MGP_CASTEiJ_T0082771.1 MGP_CASTEiJ_G0030988.1 mouse_genomes_project 7 20922457 20941495 + MGP_CASTEiJ_P0082771 Gmfg protein_coding protein_coding MGP_CASTEiJ_T0082772.1 MGP_CASTEiJ_G0030988.1 mouse_genomes_project 7 20923225 20941498 + MGP_CASTEiJ_P0082772 Gmfg protein_coding protein_coding MGP_CASTEiJ_T0082773.1 MGP_CASTEiJ_G0030988.1 mouse_genomes_project 7 20927965 20941495 + MGP_CASTEiJ_P0082773 Gmfg protein_coding protein_coding MGP_CASTEiJ_T0082774.1 MGP_CASTEiJ_G0030988.1 mouse_genomes_project 7 20934830 20943182 + Gmfg protein_coding processed_transcript MGP_CASTEiJ_T0082535.1 MGP_CASTEiJ_G0030924.1 mouse_genomes_project 7 18064203 18095022 - MGP_CASTEiJ_P0082535 Axl protein_coding protein_coding MGP_CASTEiJ_T0082536.1 MGP_CASTEiJ_G0030924.1 mouse_genomes_project 7 18064560 18095040 - MGP_CASTEiJ_P0082536 Axl protein_coding protein_coding MGP_CASTEiJ_T0082537.1 MGP_CASTEiJ_G0030924.1 mouse_genomes_project 7 18067614 18070991 - Axl protein_coding retained_intron MGP_CASTEiJ_T0082538.1 MGP_CASTEiJ_G0030924.1 mouse_genomes_project 7 18068306 18071340 - Axl protein_coding retained_intron MGP_CASTEiJ_T0082539.1 MGP_CASTEiJ_G0030924.1 mouse_genomes_project 7 18070718 18095035 - Axl protein_coding retained_intron MGP_CASTEiJ_T0082540.1 MGP_CASTEiJ_G0030924.1 mouse_genomes_project 7 18073394 18081678 - MGP_CASTEiJ_P0082540 Axl protein_coding protein_coding MGP_CASTEiJ_T0082541.1 MGP_CASTEiJ_G0030924.1 mouse_genomes_project 7 18085467 18093784 - Axl protein_coding retained_intron MGP_CASTEiJ_T0082542.1 MGP_CASTEiJ_G0030924.1 mouse_genomes_project 7 18092648 18094290 - Axl protein_coding retained_intron MGP_CASTEiJ_T0082407.1 MGP_CASTEiJ_G0030896.1 mouse_genomes_project 7 17244255 17276618 - MGP_CASTEiJ_P0082407 Atp1a3 protein_coding protein_coding MGP_CASTEiJ_T0082408.1 MGP_CASTEiJ_G0030896.1 mouse_genomes_project 7 17244255 17276681 - MGP_CASTEiJ_P0082408 Atp1a3 protein_coding protein_coding MGP_CASTEiJ_T0082409.1 MGP_CASTEiJ_G0030896.1 mouse_genomes_project 7 17244258 17276666 - MGP_CASTEiJ_P0082409 Atp1a3 protein_coding protein_coding MGP_CASTEiJ_T0082410.1 MGP_CASTEiJ_G0030896.1 mouse_genomes_project 7 17259944 17276630 - Atp1a3 protein_coding retained_intron MGP_CASTEiJ_T0082411.1 MGP_CASTEiJ_G0030896.1 mouse_genomes_project 7 17267905 17276680 - Atp1a3 protein_coding retained_intron MGP_CASTEiJ_T0083862.1 MGP_CASTEiJ_G0031241.1 mouse_genomes_project 7 37666564 37669811 - MGP_CASTEiJ_P0083862 Gfy protein_coding protein_coding MGP_CASTEiJ_T0005051.1 MGP_CASTEiJ_G0004311.1 mouse_genomes_project 7 23654759 23658984 + Gm4673 antisense antisense MGP_CASTEiJ_T0086594.1 MGP_CASTEiJ_G0032009.1 mouse_genomes_project 7 122242724 122246133 + MGP_CASTEiJ_P0086594 protein_coding protein_coding MGP_CASTEiJ_T0015148.1 MGP_CASTEiJ_G0013311.1 mouse_genomes_project 7 13566704 13567274 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102494.1 MGP_CASTEiJ_G0039219.1 mouse_genomes_project 7 12982488 12990981 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0085655.1 MGP_CASTEiJ_G0031721.1 mouse_genomes_project 7 98927021 98927960 + MGP_CASTEiJ_P0085655 Olfr641 protein_coding protein_coding MGP_CASTEiJ_T0086479.1 MGP_CASTEiJ_G0031988.1 mouse_genomes_project 7 119085858 119141382 + MGP_CASTEiJ_P0086479 Lcmt1 protein_coding protein_coding MGP_CASTEiJ_T0086480.1 MGP_CASTEiJ_G0031988.1 mouse_genomes_project 7 119085932 119141373 + MGP_CASTEiJ_P0086480 Lcmt1 protein_coding protein_coding MGP_CASTEiJ_T0086481.1 MGP_CASTEiJ_G0031988.1 mouse_genomes_project 7 119118815 119133749 + Lcmt1 protein_coding processed_transcript MGP_CASTEiJ_T0086482.1 MGP_CASTEiJ_G0031988.1 mouse_genomes_project 7 119129354 119141368 + Lcmt1 protein_coding retained_intron MGP_CASTEiJ_T0086483.1 MGP_CASTEiJ_G0031988.1 mouse_genomes_project 7 119138833 119141372 + Lcmt1 protein_coding retained_intron MGP_CASTEiJ_T0087018.1 MGP_CASTEiJ_G0032085.1 mouse_genomes_project 7 123728499 123746116 - MGP_CASTEiJ_P0087018 Zfp668 protein_coding protein_coding MGP_CASTEiJ_T0087019.1 MGP_CASTEiJ_G0032085.1 mouse_genomes_project 7 123731164 123746068 - MGP_CASTEiJ_P0087019 Zfp668 protein_coding protein_coding MGP_CASTEiJ_T0087020.1 MGP_CASTEiJ_G0032085.1 mouse_genomes_project 7 123731440 123744924 - MGP_CASTEiJ_P0087020 Zfp668 protein_coding protein_coding MGP_CASTEiJ_T0087021.1 MGP_CASTEiJ_G0032085.1 mouse_genomes_project 7 123731440 123746065 - MGP_CASTEiJ_P0087021 Zfp668 protein_coding protein_coding MGP_CASTEiJ_T0087022.1 MGP_CASTEiJ_G0032085.1 mouse_genomes_project 7 123733488 123744935 - MGP_CASTEiJ_P0087022 Zfp668 protein_coding protein_coding MGP_CASTEiJ_T0087023.1 MGP_CASTEiJ_G0032085.1 mouse_genomes_project 7 123743018 123745412 - Zfp668 protein_coding processed_transcript MGP_CASTEiJ_T0087965.1 MGP_CASTEiJ_G0032295.1 mouse_genomes_project 7 140617001 140617998 - MGP_CASTEiJ_P0087965 Phlda2 protein_coding protein_coding MGP_CASTEiJ_T0087530.1 MGP_CASTEiJ_G0032201.1 mouse_genomes_project 7 137244529 137245631 + MGP_CASTEiJ_P0087530 Olfr527 protein_coding protein_coding MGP_CASTEiJ_T0015127.1 MGP_CASTEiJ_G0013290.1 mouse_genomes_project 7 7640047 7641011 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085649.1 MGP_CASTEiJ_G0031715.1 mouse_genomes_project 7 98784083 98785043 + MGP_CASTEiJ_P0085649 Olfr631 protein_coding protein_coding MGP_CASTEiJ_T0002153.1 MGP_CASTEiJ_G0002073.1 mouse_genomes_project 7 35919155 35919626 + TEC TEC MGP_CASTEiJ_T0087245.1 MGP_CASTEiJ_G0032126.1 mouse_genomes_project 7 127432124 127448235 - MGP_CASTEiJ_P0087245 Cuzd1 protein_coding protein_coding MGP_CASTEiJ_T0008785.1 MGP_CASTEiJ_G0007090.1 mouse_genomes_project 7 122092619 122095709 - Gm45142 lincRNA lincRNA MGP_CASTEiJ_T0008786.1 MGP_CASTEiJ_G0007090.1 mouse_genomes_project 7 122094622 122095731 - Gm45142 lincRNA lincRNA MGP_CASTEiJ_T0087149.1 MGP_CASTEiJ_G0032111.1 mouse_genomes_project 7 124445960 124471229 + MGP_CASTEiJ_P0087149 Bag3 protein_coding protein_coding MGP_CASTEiJ_T0081642.1 MGP_CASTEiJ_G0030648.1 mouse_genomes_project 7 2009786 2014120 + MGP_CASTEiJ_P0081642 protein_coding protein_coding MGP_CASTEiJ_T0015169.1 MGP_CASTEiJ_G0013332.1 mouse_genomes_project 7 19639042 19639669 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0086444.1 MGP_CASTEiJ_G0031984.1 mouse_genomes_project 7 118658516 118675842 + MGP_CASTEiJ_P0086444 Rbbp6 protein_coding protein_coding MGP_CASTEiJ_T0086445.1 MGP_CASTEiJ_G0031984.1 mouse_genomes_project 7 118663369 118670169 + Rbbp6 protein_coding retained_intron MGP_CASTEiJ_T0086446.1 MGP_CASTEiJ_G0031984.1 mouse_genomes_project 7 118663587 118675010 + Rbbp6 protein_coding retained_intron MGP_CASTEiJ_T0086447.1 MGP_CASTEiJ_G0031984.1 mouse_genomes_project 7 118673912 118694080 + MGP_CASTEiJ_P0086447 Rbbp6 protein_coding protein_coding MGP_CASTEiJ_T0086448.1 MGP_CASTEiJ_G0031984.1 mouse_genomes_project 7 118673950 118677152 + Rbbp6 protein_coding retained_intron MGP_CASTEiJ_T0086449.1 MGP_CASTEiJ_G0031984.1 mouse_genomes_project 7 118681602 118684159 + Rbbp6 protein_coding retained_intron MGP_CASTEiJ_T0083604.1 MGP_CASTEiJ_G0031168.1 mouse_genomes_project 7 35755716 35772863 + MGP_CASTEiJ_P0083604 Zfp719 protein_coding protein_coding MGP_CASTEiJ_T0083605.1 MGP_CASTEiJ_G0031168.1 mouse_genomes_project 7 35755725 35769206 + MGP_CASTEiJ_P0083605 Zfp719 protein_coding protein_coding MGP_CASTEiJ_T0083606.1 MGP_CASTEiJ_G0031168.1 mouse_genomes_project 7 35755745 35764165 + Zfp719 protein_coding retained_intron MGP_CASTEiJ_T0085812.1 MGP_CASTEiJ_G0031788.1 mouse_genomes_project 7 100863432 100868644 - MGP_CASTEiJ_P0085812 Taf10 protein_coding protein_coding MGP_CASTEiJ_T0085820.1 MGP_CASTEiJ_G0031788.1 mouse_genomes_project 7 100866946 100867651 - Taf10 protein_coding retained_intron MGP_CASTEiJ_T0085821.1 MGP_CASTEiJ_G0031788.1 mouse_genomes_project 7 100867277 100868625 - Taf10 protein_coding retained_intron MGP_CASTEiJ_T0081510.1 MGP_CASTEiJ_G0030613.1 mouse_genomes_project 7 1369726 1396386 - MGP_CASTEiJ_P0081510 Ppp1r12c protein_coding protein_coding MGP_CASTEiJ_T0081511.1 MGP_CASTEiJ_G0030613.1 mouse_genomes_project 7 1369726 1396705 - MGP_CASTEiJ_P0081511 Ppp1r12c protein_coding protein_coding MGP_CASTEiJ_T0081512.1 MGP_CASTEiJ_G0030613.1 mouse_genomes_project 7 1369729 1372240 - Ppp1r12c protein_coding retained_intron MGP_CASTEiJ_T0081513.1 MGP_CASTEiJ_G0030613.1 mouse_genomes_project 7 1369794 1370842 - Ppp1r12c protein_coding processed_transcript MGP_CASTEiJ_T0081514.1 MGP_CASTEiJ_G0030613.1 mouse_genomes_project 7 1371841 1372706 - Ppp1r12c protein_coding retained_intron MGP_CASTEiJ_T0081515.1 MGP_CASTEiJ_G0030613.1 mouse_genomes_project 7 1372147 1373528 - Ppp1r12c protein_coding retained_intron MGP_CASTEiJ_T0081516.1 MGP_CASTEiJ_G0030613.1 mouse_genomes_project 7 1372224 1373922 - Ppp1r12c protein_coding retained_intron MGP_CASTEiJ_T0081517.1 MGP_CASTEiJ_G0030613.1 mouse_genomes_project 7 1373419 1374146 - Ppp1r12c protein_coding retained_intron MGP_CASTEiJ_T0081518.1 MGP_CASTEiJ_G0030613.1 mouse_genomes_project 7 1374364 1374948 - Ppp1r12c protein_coding retained_intron MGP_CASTEiJ_T0081519.1 MGP_CASTEiJ_G0030613.1 mouse_genomes_project 7 1377422 1396689 - Ppp1r12c protein_coding retained_intron MGP_CASTEiJ_T0081520.1 MGP_CASTEiJ_G0030613.1 mouse_genomes_project 7 1378069 1396554 - MGP_CASTEiJ_P0081520 Ppp1r12c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081747.1 MGP_CASTEiJ_G0030706.1 mouse_genomes_project 7 7533640 7540813 - MGP_CASTEiJ_P0081747 Zfp551 protein_coding protein_coding MGP_CASTEiJ_T0081748.1 MGP_CASTEiJ_G0030706.1 mouse_genomes_project 7 7535199 7540747 - MGP_CASTEiJ_P0081748 Zfp551 protein_coding protein_coding MGP_CASTEiJ_T0081749.1 MGP_CASTEiJ_G0030706.1 mouse_genomes_project 7 7535352 7540698 - Zfp551 protein_coding processed_transcript MGP_CASTEiJ_T0085147.1 MGP_CASTEiJ_G0031551.1 mouse_genomes_project 7 91815071 91819657 - MGP_CASTEiJ_P0085147 Thrsp protein_coding protein_coding MGP_CASTEiJ_T0085148.1 MGP_CASTEiJ_G0031551.1 mouse_genomes_project 7 91818092 91819446 - Thrsp protein_coding retained_intron MGP_CASTEiJ_T0087506.1 MGP_CASTEiJ_G0032191.1 mouse_genomes_project 7 137003896 137015288 - MGP_CASTEiJ_P0087506 Echs1 protein_coding protein_coding MGP_CASTEiJ_T0087507.1 MGP_CASTEiJ_G0032191.1 mouse_genomes_project 7 137003904 137015201 - Echs1 protein_coding retained_intron MGP_CASTEiJ_T0087508.1 MGP_CASTEiJ_G0032191.1 mouse_genomes_project 7 137004272 137011056 - MGP_CASTEiJ_P0087508 Echs1 protein_coding protein_coding MGP_CASTEiJ_T0087509.1 MGP_CASTEiJ_G0032191.1 mouse_genomes_project 7 137006814 137015227 - Echs1 protein_coding retained_intron MGP_CASTEiJ_T0087510.1 MGP_CASTEiJ_G0032191.1 mouse_genomes_project 7 137006814 137015227 - Echs1 protein_coding retained_intron MGP_CASTEiJ_T0087511.1 MGP_CASTEiJ_G0032191.1 mouse_genomes_project 7 137009769 137015219 - Echs1 protein_coding processed_transcript MGP_CASTEiJ_T0100020.1 MGP_CASTEiJ_G0036933.1 mouse_genomes_project 7 85414379 85414482 + Gm24552 snRNA snRNA MGP_CASTEiJ_T0082806.1 MGP_CASTEiJ_G0030997.1 mouse_genomes_project 7 21291194 21294016 + MGP_CASTEiJ_P0082806 Ccer2 protein_coding protein_coding MGP_CASTEiJ_T0087555.1 MGP_CASTEiJ_G0032221.1 mouse_genomes_project 7 137773842 137777038 + MGP_CASTEiJ_P0087555 Odf3 protein_coding protein_coding MGP_CASTEiJ_T0087556.1 MGP_CASTEiJ_G0032221.1 mouse_genomes_project 7 137773860 137777028 + MGP_CASTEiJ_P0087556 Odf3 protein_coding protein_coding MGP_CASTEiJ_T0087557.1 MGP_CASTEiJ_G0032221.1 mouse_genomes_project 7 137773861 137777031 + Odf3 protein_coding retained_intron MGP_CASTEiJ_T0015289.1 MGP_CASTEiJ_G0013452.1 mouse_genomes_project 7 99354319 99355449 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010528.1 MGP_CASTEiJ_G0008716.1 mouse_genomes_project 7 328660 328751 + Gm23450 miRNA miRNA MGP_CASTEiJ_T0081644.1 MGP_CASTEiJ_G0030650.1 mouse_genomes_project 7 2015740 2034708 + MGP_CASTEiJ_P0081644 U2af2 protein_coding protein_coding MGP_CASTEiJ_T0081645.1 MGP_CASTEiJ_G0030650.1 mouse_genomes_project 7 2020851 2034263 + MGP_CASTEiJ_P0081645 U2af2 protein_coding protein_coding MGP_CASTEiJ_T0087475.1 MGP_CASTEiJ_G0032182.1 mouse_genomes_project 7 136834631 136835955 + MGP_CASTEiJ_P0087475 Utf1 protein_coding protein_coding MGP_CASTEiJ_T0086212.1 MGP_CASTEiJ_G0031923.1 mouse_genomes_project 7 113799868 113866443 - MGP_CASTEiJ_P0086212 Syt17 protein_coding unknown_likely_coding MGP_CASTEiJ_T0086213.1 MGP_CASTEiJ_G0031923.1 mouse_genomes_project 7 113799871 113866382 - MGP_CASTEiJ_P0086213 Syt17 protein_coding protein_coding MGP_CASTEiJ_T0086214.1 MGP_CASTEiJ_G0031923.1 mouse_genomes_project 7 113799872 113865345 - Syt17 protein_coding retained_intron MGP_CASTEiJ_T0086215.1 MGP_CASTEiJ_G0031923.1 mouse_genomes_project 7 113828741 113870927 - MGP_CASTEiJ_P0086215 Syt17 protein_coding protein_coding MGP_CASTEiJ_T0082180.1 MGP_CASTEiJ_G0030831.1 mouse_genomes_project 7 14398707 14409005 - MGP_CASTEiJ_P0082180 Gemin7 protein_coding protein_coding MGP_CASTEiJ_T0082181.1 MGP_CASTEiJ_G0030831.1 mouse_genomes_project 7 14398710 14408510 - MGP_CASTEiJ_P0082181 Gemin7 protein_coding protein_coding MGP_CASTEiJ_T0082182.1 MGP_CASTEiJ_G0030831.1 mouse_genomes_project 7 14398848 14408135 - MGP_CASTEiJ_P0082182 Gemin7 protein_coding protein_coding MGP_CASTEiJ_T0082183.1 MGP_CASTEiJ_G0030831.1 mouse_genomes_project 7 14398880 14408256 - MGP_CASTEiJ_P0082183 Gemin7 protein_coding protein_coding MGP_CASTEiJ_T0082184.1 MGP_CASTEiJ_G0030831.1 mouse_genomes_project 7 14399007 14408552 - MGP_CASTEiJ_P0082184 Gemin7 protein_coding protein_coding MGP_CASTEiJ_T0082185.1 MGP_CASTEiJ_G0030831.1 mouse_genomes_project 7 14399185 14408341 - MGP_CASTEiJ_P0082185 Gemin7 protein_coding protein_coding MGP_CASTEiJ_T0081643.1 MGP_CASTEiJ_G0030649.1 mouse_genomes_project 7 2010326 2014376 + MGP_CASTEiJ_P0081643 Ccdc106 protein_coding protein_coding MGP_CASTEiJ_T0008643.1 MGP_CASTEiJ_G0006995.1 mouse_genomes_project 7 37737622 37759809 + lincRNA lincRNA MGP_CASTEiJ_T0008644.1 MGP_CASTEiJ_G0006995.1 mouse_genomes_project 7 37759770 37775348 + lincRNA lincRNA MGP_CASTEiJ_T0087383.1 MGP_CASTEiJ_G0032157.1 mouse_genomes_project 7 131232329 131289897 - MGP_CASTEiJ_P0087383 Fam196a protein_coding protein_coding MGP_CASTEiJ_T0085660.1 MGP_CASTEiJ_G0031726.1 mouse_genomes_project 7 99041603 99042542 + MGP_CASTEiJ_P0085660 Olfr646 protein_coding protein_coding MGP_CASTEiJ_T0008634.1 MGP_CASTEiJ_G0006988.1 mouse_genomes_project 7 33161578 33165190 + Gm17102 lincRNA lincRNA MGP_CASTEiJ_T0081754.1 MGP_CASTEiJ_G0030708.1 mouse_genomes_project 7 7635125 7663919 + MGP_CASTEiJ_P0081754 2900092C05Rik protein_coding protein_coding MGP_CASTEiJ_T0008584.1 MGP_CASTEiJ_G0006947.1 mouse_genomes_project 7 16626270 16632133 + lincRNA lincRNA MGP_CASTEiJ_T0087547.1 MGP_CASTEiJ_G0032218.1 mouse_genomes_project 7 137730405 137748148 - MGP_CASTEiJ_P0087547 Zfp941 protein_coding protein_coding MGP_CASTEiJ_T0087548.1 MGP_CASTEiJ_G0032218.1 mouse_genomes_project 7 137732647 137748102 - MGP_CASTEiJ_P0087548 Zfp941 protein_coding protein_coding MGP_CASTEiJ_T0087549.1 MGP_CASTEiJ_G0032218.1 mouse_genomes_project 7 137742373 137748116 - Zfp941 protein_coding processed_transcript MGP_CASTEiJ_T0002158.1 MGP_CASTEiJ_G0002078.1 mouse_genomes_project 7 42316261 42318257 + TEC TEC MGP_CASTEiJ_T0086395.1 MGP_CASTEiJ_G0031974.1 mouse_genomes_project 7 117657626 117690405 - Ears2 protein_coding retained_intron MGP_CASTEiJ_T0086396.1 MGP_CASTEiJ_G0031974.1 mouse_genomes_project 7 117659218 117690464 - Ears2 protein_coding retained_intron MGP_CASTEiJ_T0086397.1 MGP_CASTEiJ_G0031974.1 mouse_genomes_project 7 117659218 117690657 - MGP_CASTEiJ_P0086397 Ears2 protein_coding protein_coding MGP_CASTEiJ_T0002178.1 MGP_CASTEiJ_G0002098.1 mouse_genomes_project 7 66394183 66396286 + TEC TEC MGP_CASTEiJ_T0102579.1 MGP_CASTEiJ_G0039303.1 mouse_genomes_project 7 97311025 97312524 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010532.1 MGP_CASTEiJ_G0008720.1 mouse_genomes_project 7 3773890 3773974 + Mir3099 miRNA miRNA MGP_CASTEiJ_T0015212.1 MGP_CASTEiJ_G0013375.1 mouse_genomes_project 7 38414907 38417229 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083667.1 MGP_CASTEiJ_G0031194.1 mouse_genomes_project 7 36764397 36781800 - MGP_CASTEiJ_P0083667 1700008O03Rik protein_coding protein_coding MGP_CASTEiJ_T0083668.1 MGP_CASTEiJ_G0031194.1 mouse_genomes_project 7 36764453 36781284 - 1700008O03Rik protein_coding retained_intron MGP_CASTEiJ_T0083669.1 MGP_CASTEiJ_G0031194.1 mouse_genomes_project 7 36764591 36780370 - MGP_CASTEiJ_P0083669 1700008O03Rik protein_coding protein_coding MGP_CASTEiJ_T0083670.1 MGP_CASTEiJ_G0031194.1 mouse_genomes_project 7 36768042 36794257 - 1700008O03Rik protein_coding processed_transcript MGP_CASTEiJ_T0083671.1 MGP_CASTEiJ_G0031194.1 mouse_genomes_project 7 36785499 36794393 - 1700008O03Rik protein_coding processed_transcript MGP_CASTEiJ_T0081817.1 MGP_CASTEiJ_G0030724.1 mouse_genomes_project 7 8223987 8224914 - MGP_CASTEiJ_P0081817 Vmn1r85 protein_coding protein_coding MGP_CASTEiJ_T0081660.1 MGP_CASTEiJ_G0030658.1 mouse_genomes_project 7 2891439 2894655 - MGP_CASTEiJ_P0081660 Vmn1r65 protein_coding protein_coding MGP_CASTEiJ_T0102511.1 MGP_CASTEiJ_G0039235.1 mouse_genomes_project 7 30082428 30083979 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002249.1 MGP_CASTEiJ_G0002168.1 mouse_genomes_project 7 140399827 140403752 + TEC TEC MGP_CASTEiJ_T0015260.1 MGP_CASTEiJ_G0013423.1 mouse_genomes_project 7 80361224 80361473 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100049.1 MGP_CASTEiJ_G0036962.1 mouse_genomes_project 7 136010037 136010136 - Gm27975 snRNA snRNA MGP_CASTEiJ_T0015111.1 MGP_CASTEiJ_G0013274.1 mouse_genomes_project 7 890359 890761 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102506.1 MGP_CASTEiJ_G0039230.1 mouse_genomes_project 7 24988685 24989963 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0084333.1 MGP_CASTEiJ_G0031361.1 mouse_genomes_project 7 55002933 55005486 - MGP_CASTEiJ_P0084333 Mkrn3 protein_coding protein_coding MGP_CASTEiJ_T0087024.1 MGP_CASTEiJ_G0032086.1 mouse_genomes_project 7 123745508 123747804 + Zfp646 protein_coding retained_intron MGP_CASTEiJ_T0087025.1 MGP_CASTEiJ_G0032086.1 mouse_genomes_project 7 123746083 123749476 + MGP_CASTEiJ_P0087025 Zfp646 protein_coding protein_coding MGP_CASTEiJ_T0087026.1 MGP_CASTEiJ_G0032086.1 mouse_genomes_project 7 123746988 123755288 + MGP_CASTEiJ_P0087026 Zfp646 protein_coding protein_coding MGP_CASTEiJ_T0087027.1 MGP_CASTEiJ_G0032086.1 mouse_genomes_project 7 123748598 123755284 + MGP_CASTEiJ_P0087027 Zfp646 protein_coding protein_coding MGP_CASTEiJ_T0008736.1 MGP_CASTEiJ_G0007058.1 mouse_genomes_project 7 87319424 87351872 - Gm9934 lincRNA lincRNA MGP_CASTEiJ_T0008737.1 MGP_CASTEiJ_G0007058.1 mouse_genomes_project 7 87338231 87351640 - Gm9934 lincRNA lincRNA MGP_CASTEiJ_T0011371.1 MGP_CASTEiJ_G0009559.1 mouse_genomes_project 7 140374466 140374661 + Gm27389 misc_RNA misc_RNA MGP_CASTEiJ_T0087760.1 MGP_CASTEiJ_G0032260.1 mouse_genomes_project 7 138458247 138465024 + MGP_CASTEiJ_P0087760 Cracr2b protein_coding protein_coding MGP_CASTEiJ_T0087761.1 MGP_CASTEiJ_G0032260.1 mouse_genomes_project 7 138459048 138462150 + MGP_CASTEiJ_P0087761 Cracr2b protein_coding protein_coding MGP_CASTEiJ_T0087762.1 MGP_CASTEiJ_G0032260.1 mouse_genomes_project 7 138459113 138460585 + MGP_CASTEiJ_P0087762 Cracr2b protein_coding protein_coding MGP_CASTEiJ_T0087763.1 MGP_CASTEiJ_G0032260.1 mouse_genomes_project 7 138460233 138461850 + MGP_CASTEiJ_P0087763 Cracr2b protein_coding protein_coding MGP_CASTEiJ_T0087764.1 MGP_CASTEiJ_G0032260.1 mouse_genomes_project 7 138460533 138464491 + MGP_CASTEiJ_P0087764 Cracr2b protein_coding protein_coding MGP_CASTEiJ_T0087765.1 MGP_CASTEiJ_G0032260.1 mouse_genomes_project 7 138461166 138461953 + Cracr2b protein_coding retained_intron MGP_CASTEiJ_T0087766.1 MGP_CASTEiJ_G0032260.1 mouse_genomes_project 7 138462214 138464093 + Cracr2b protein_coding retained_intron MGP_CASTEiJ_T0087767.1 MGP_CASTEiJ_G0032260.1 mouse_genomes_project 7 138462348 138464777 + Cracr2b protein_coding retained_intron MGP_CASTEiJ_T0087768.1 MGP_CASTEiJ_G0032260.1 mouse_genomes_project 7 138464089 138465024 + MGP_CASTEiJ_P0087768 Cracr2b protein_coding protein_coding MGP_CASTEiJ_T0102581.1 MGP_CASTEiJ_G0039305.1 mouse_genomes_project 7 97901765 97902713 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0086955.1 MGP_CASTEiJ_G0032074.1 mouse_genomes_project 7 123463736 123471136 - MGP_CASTEiJ_P0086955 Zfp629 protein_coding protein_coding MGP_CASTEiJ_T0086956.1 MGP_CASTEiJ_G0032074.1 mouse_genomes_project 7 123463736 123471918 - MGP_CASTEiJ_P0086956 Zfp629 protein_coding protein_coding MGP_CASTEiJ_T0086957.1 MGP_CASTEiJ_G0032074.1 mouse_genomes_project 7 123463736 123471975 - MGP_CASTEiJ_P0086957 Zfp629 protein_coding protein_coding MGP_CASTEiJ_T0086958.1 MGP_CASTEiJ_G0032074.1 mouse_genomes_project 7 123465157 123471570 - MGP_CASTEiJ_P0086958 Zfp629 protein_coding protein_coding MGP_CASTEiJ_T0086959.1 MGP_CASTEiJ_G0032074.1 mouse_genomes_project 7 123465289 123471961 - MGP_CASTEiJ_P0086959 Zfp629 protein_coding protein_coding MGP_CASTEiJ_T0086960.1 MGP_CASTEiJ_G0032074.1 mouse_genomes_project 7 123465458 123472500 - MGP_CASTEiJ_P0086960 Zfp629 protein_coding protein_coding MGP_CASTEiJ_T0086961.1 MGP_CASTEiJ_G0032074.1 mouse_genomes_project 7 123468606 123471063 - MGP_CASTEiJ_P0086961 Zfp629 protein_coding protein_coding MGP_CASTEiJ_T0086962.1 MGP_CASTEiJ_G0032074.1 mouse_genomes_project 7 123468686 123471903 - MGP_CASTEiJ_P0086962 Zfp629 protein_coding protein_coding MGP_CASTEiJ_T0086963.1 MGP_CASTEiJ_G0032074.1 mouse_genomes_project 7 123468753 123471068 - MGP_CASTEiJ_P0086963 Zfp629 protein_coding protein_coding MGP_CASTEiJ_T0015284.1 MGP_CASTEiJ_G0013447.1 mouse_genomes_project 7 97330785 97330998 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002198.1 MGP_CASTEiJ_G0002117.1 mouse_genomes_project 7 71966565 71967668 - TEC TEC MGP_CASTEiJ_T0087109.1 MGP_CASTEiJ_G0032106.1 mouse_genomes_project 7 124143673 124149352 + MGP_CASTEiJ_P0087109 protein_coding protein_coding MGP_CASTEiJ_T0102451.1 MGP_CASTEiJ_G0039176.1 mouse_genomes_project 7 5803270 5804164 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0081373.1 MGP_CASTEiJ_G0030592.1 mouse_genomes_project 7 407567 422768 - MGP_CASTEiJ_P0081373 Tarm1 protein_coding protein_coding MGP_CASTEiJ_T0081374.1 MGP_CASTEiJ_G0030592.1 mouse_genomes_project 7 409568 422834 - MGP_CASTEiJ_P0081374 Tarm1 protein_coding protein_coding MGP_CASTEiJ_T0081375.1 MGP_CASTEiJ_G0030592.1 mouse_genomes_project 7 410764 422728 - MGP_CASTEiJ_P0081375 Tarm1 protein_coding protein_coding MGP_CASTEiJ_T0015228.1 MGP_CASTEiJ_G0013391.1 mouse_genomes_project 7 56350443 56350703 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015298.1 MGP_CASTEiJ_G0013461.1 mouse_genomes_project 7 110425822 110426183 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015172.1 MGP_CASTEiJ_G0013335.1 mouse_genomes_project 7 23361669 23362197 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008672.1 MGP_CASTEiJ_G0007015.1 mouse_genomes_project 7 64270711 64312577 + Gm29295 lincRNA lincRNA MGP_CASTEiJ_T0102495.1 MGP_CASTEiJ_G0039220.1 mouse_genomes_project 7 15603169 15607614 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0083441.1 MGP_CASTEiJ_G0031130.1 mouse_genomes_project 7 26887761 26896898 - MGP_CASTEiJ_P0083441 Nudt19 protein_coding protein_coding MGP_CASTEiJ_T0083442.1 MGP_CASTEiJ_G0031130.1 mouse_genomes_project 7 26888105 26895788 - Nudt19 protein_coding processed_transcript MGP_CASTEiJ_T0083443.1 MGP_CASTEiJ_G0031130.1 mouse_genomes_project 7 26888560 26892631 - Nudt19 protein_coding retained_intron MGP_CASTEiJ_T0002201.1 MGP_CASTEiJ_G0002120.1 mouse_genomes_project 7 72537546 72541408 + TEC TEC MGP_CASTEiJ_T0081627.1 MGP_CASTEiJ_G0030640.1 mouse_genomes_project 7 1930072 1942751 - Zfp579 protein_coding processed_transcript MGP_CASTEiJ_T0081628.1 MGP_CASTEiJ_G0030640.1 mouse_genomes_project 7 1939512 1942854 - Zfp579 protein_coding processed_transcript MGP_CASTEiJ_T0081629.1 MGP_CASTEiJ_G0030640.1 mouse_genomes_project 7 1939512 1942001 - MGP_CASTEiJ_P0081629 Zfp579 protein_coding protein_coding MGP_CASTEiJ_T0081630.1 MGP_CASTEiJ_G0030640.1 mouse_genomes_project 7 1939514 1942797 - MGP_CASTEiJ_P0081630 Zfp579 protein_coding protein_coding MGP_CASTEiJ_T0081631.1 MGP_CASTEiJ_G0030640.1 mouse_genomes_project 7 1940861 1942781 - MGP_CASTEiJ_P0081631 Zfp579 protein_coding protein_coding MGP_CASTEiJ_T0081632.1 MGP_CASTEiJ_G0030640.1 mouse_genomes_project 7 1941671 1942725 - Zfp579 protein_coding processed_transcript MGP_CASTEiJ_T0015198.1 MGP_CASTEiJ_G0013361.1 mouse_genomes_project 7 33542646 33543296 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085621.1 MGP_CASTEiJ_G0031687.1 mouse_genomes_project 7 98292249 98293209 - MGP_CASTEiJ_P0085621 Olfr609 protein_coding protein_coding MGP_CASTEiJ_T0085076.1 MGP_CASTEiJ_G0031535.1 mouse_genomes_project 7 84582783 84589980 - MGP_CASTEiJ_P0085076 Tmem126a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085077.1 MGP_CASTEiJ_G0031535.1 mouse_genomes_project 7 84582788 84590001 - MGP_CASTEiJ_P0085077 Tmem126a protein_coding protein_coding MGP_CASTEiJ_T0085078.1 MGP_CASTEiJ_G0031535.1 mouse_genomes_project 7 84587958 84589980 - Tmem126a protein_coding retained_intron MGP_CASTEiJ_T0087977.1 MGP_CASTEiJ_G0032299.1 mouse_genomes_project 7 140765843 140833499 - MGP_CASTEiJ_P0087977 protein_coding protein_coding MGP_CASTEiJ_T0015224.1 MGP_CASTEiJ_G0013387.1 mouse_genomes_project 7 49651310 49651734 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082689.1 MGP_CASTEiJ_G0030961.1 mouse_genomes_project 7 20085477 20103669 - MGP_CASTEiJ_P0082689 Map3k10 protein_coding protein_coding MGP_CASTEiJ_T0082690.1 MGP_CASTEiJ_G0030961.1 mouse_genomes_project 7 20085766 20103673 - MGP_CASTEiJ_P0082690 Map3k10 protein_coding protein_coding MGP_CASTEiJ_T0082691.1 MGP_CASTEiJ_G0030961.1 mouse_genomes_project 7 20086812 20103125 - MGP_CASTEiJ_P0082691 Map3k10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082692.1 MGP_CASTEiJ_G0030961.1 mouse_genomes_project 7 20093184 20094134 - Map3k10 protein_coding retained_intron MGP_CASTEiJ_T0082693.1 MGP_CASTEiJ_G0030961.1 mouse_genomes_project 7 20093206 20103432 - Map3k10 protein_coding retained_intron MGP_CASTEiJ_T0082694.1 MGP_CASTEiJ_G0030961.1 mouse_genomes_project 7 20097229 20103656 - MGP_CASTEiJ_P0082694 Map3k10 protein_coding protein_coding MGP_CASTEiJ_T0011353.1 MGP_CASTEiJ_G0009541.1 mouse_genomes_project 7 36628675 36628963 + Gm25386 misc_RNA misc_RNA MGP_CASTEiJ_T0084455.1 MGP_CASTEiJ_G0031385.1 mouse_genomes_project 7 59250958 59295883 - MGP_CASTEiJ_P0084455 Asb7 protein_coding protein_coding MGP_CASTEiJ_T0084456.1 MGP_CASTEiJ_G0031385.1 mouse_genomes_project 7 59250958 59295177 - MGP_CASTEiJ_P0084456 Asb7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084457.1 MGP_CASTEiJ_G0031385.1 mouse_genomes_project 7 59283409 59295761 - MGP_CASTEiJ_P0084457 Asb7 protein_coding protein_coding MGP_CASTEiJ_T0008726.1 MGP_CASTEiJ_G0007050.1 mouse_genomes_project 7 76360358 76368504 + 1700010L04Rik lincRNA lincRNA MGP_CASTEiJ_T0008727.1 MGP_CASTEiJ_G0007050.1 mouse_genomes_project 7 76364893 76368503 + 1700010L04Rik lincRNA lincRNA MGP_CASTEiJ_T0008728.1 MGP_CASTEiJ_G0007050.1 mouse_genomes_project 7 76364903 76368059 + 1700010L04Rik lincRNA lincRNA MGP_CASTEiJ_T0102472.1 MGP_CASTEiJ_G0039197.1 mouse_genomes_project 7 9486077 9486784 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102593.1 MGP_CASTEiJ_G0039317.1 mouse_genomes_project 7 99100478 99101362 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0081677.1 MGP_CASTEiJ_G0030664.1 mouse_genomes_project 7 3199957 3229120 + MGP_CASTEiJ_P0081677 Gm6792 protein_coding protein_coding MGP_CASTEiJ_T0081678.1 MGP_CASTEiJ_G0030664.1 mouse_genomes_project 7 3206613 3229325 + Gm6792 protein_coding processed_transcript MGP_CASTEiJ_T0081679.1 MGP_CASTEiJ_G0030664.1 mouse_genomes_project 7 3208420 3229118 + MGP_CASTEiJ_P0081679 Gm6792 protein_coding protein_coding MGP_CASTEiJ_T0087936.1 MGP_CASTEiJ_G0032290.1 mouse_genomes_project 7 140167647 140173055 - MGP_CASTEiJ_P0087936 Trpm5 protein_coding protein_coding MGP_CASTEiJ_T0087943.1 MGP_CASTEiJ_G0032290.1 mouse_genomes_project 7 140169578 140172531 - MGP_CASTEiJ_P0087943 Trpm5 protein_coding protein_coding MGP_CASTEiJ_T0087944.1 MGP_CASTEiJ_G0032290.1 mouse_genomes_project 7 140169703 140173343 - Trpm5 protein_coding retained_intron MGP_CASTEiJ_T0087945.1 MGP_CASTEiJ_G0032290.1 mouse_genomes_project 7 140170020 140185692 - Trpm5 protein_coding retained_intron MGP_CASTEiJ_T0087946.1 MGP_CASTEiJ_G0032290.1 mouse_genomes_project 7 140170280 140193109 - MGP_CASTEiJ_P0087946 Trpm5 protein_coding protein_coding MGP_CASTEiJ_T0087947.1 MGP_CASTEiJ_G0032290.1 mouse_genomes_project 7 140170671 140185607 - Trpm5 protein_coding retained_intron MGP_CASTEiJ_T0087948.1 MGP_CASTEiJ_G0032290.1 mouse_genomes_project 7 140170835 140193073 - MGP_CASTEiJ_P0087948 Trpm5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087949.1 MGP_CASTEiJ_G0032290.1 mouse_genomes_project 7 140179181 140180388 - Trpm5 protein_coding retained_intron MGP_CASTEiJ_T0088002.1 MGP_CASTEiJ_G0032305.1 mouse_genomes_project 7 141005798 141012545 + Gm498 protein_coding processed_transcript MGP_CASTEiJ_T0088003.1 MGP_CASTEiJ_G0032305.1 mouse_genomes_project 7 141008916 141038683 + MGP_CASTEiJ_P0088003 Gm498 protein_coding protein_coding MGP_CASTEiJ_T0088004.1 MGP_CASTEiJ_G0032305.1 mouse_genomes_project 7 141008922 141039705 + MGP_CASTEiJ_P0088004 Gm498 protein_coding protein_coding MGP_CASTEiJ_T0005074.1 MGP_CASTEiJ_G0004327.1 mouse_genomes_project 7 38100008 38101084 - antisense antisense MGP_CASTEiJ_T0005026.1 MGP_CASTEiJ_G0004292.1 mouse_genomes_project 7 16852809 16861086 - Gm26550 antisense antisense MGP_CASTEiJ_T0101235.1 MGP_CASTEiJ_G0038148.1 mouse_genomes_project 7 37609916 37610000 - Snord33 snoRNA snoRNA MGP_CASTEiJ_T0085571.1 MGP_CASTEiJ_G0031641.1 mouse_genomes_project 7 97330560 97338116 - MGP_CASTEiJ_P0085571 Trim21 protein_coding protein_coding MGP_CASTEiJ_T0085572.1 MGP_CASTEiJ_G0031641.1 mouse_genomes_project 7 97330560 97338116 - MGP_CASTEiJ_P0085572 Trim21 protein_coding protein_coding MGP_CASTEiJ_T0102582.1 MGP_CASTEiJ_G0039306.1 mouse_genomes_project 7 97919676 97920618 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101271.1 MGP_CASTEiJ_G0038184.1 mouse_genomes_project 7 110076997 110077126 - Gm24982 snoRNA snoRNA MGP_CASTEiJ_T0082858.1 MGP_CASTEiJ_G0031008.1 mouse_genomes_project 7 21538814 21561136 + MGP_CASTEiJ_P0082858 Map4k1 protein_coding protein_coding MGP_CASTEiJ_T0087489.1 MGP_CASTEiJ_G0032187.1 mouse_genomes_project 7 136933592 136936520 - MGP_CASTEiJ_P0087489 Msx3 protein_coding protein_coding MGP_CASTEiJ_T0087490.1 MGP_CASTEiJ_G0032187.1 mouse_genomes_project 7 136933808 136936519 - MGP_CASTEiJ_P0087490 Msx3 protein_coding protein_coding MGP_CASTEiJ_T0015122.1 MGP_CASTEiJ_G0013285.1 mouse_genomes_project 7 2852804 2853752 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084334.1 MGP_CASTEiJ_G0031362.1 mouse_genomes_project 7 55048150 55050790 - MGP_CASTEiJ_P0084334 Peg12 protein_coding protein_coding MGP_CASTEiJ_T0083400.1 MGP_CASTEiJ_G0031123.1 mouse_genomes_project 7 26494540 26497462 - Lrp3 protein_coding processed_transcript MGP_CASTEiJ_T0083401.1 MGP_CASTEiJ_G0031123.1 mouse_genomes_project 7 26495384 26578422 - MGP_CASTEiJ_P0083401 Lrp3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083402.1 MGP_CASTEiJ_G0031123.1 mouse_genomes_project 7 26495390 26497728 - Lrp3 protein_coding retained_intron MGP_CASTEiJ_T0083403.1 MGP_CASTEiJ_G0031123.1 mouse_genomes_project 7 26495390 26510097 - MGP_CASTEiJ_P0083403 Lrp3 protein_coding protein_coding MGP_CASTEiJ_T0083404.1 MGP_CASTEiJ_G0031123.1 mouse_genomes_project 7 26495391 26509891 - MGP_CASTEiJ_P0083404 Lrp3 protein_coding protein_coding MGP_CASTEiJ_T0008689.1 MGP_CASTEiJ_G0007030.1 mouse_genomes_project 7 66633656 66634363 - Gm44738 lincRNA lincRNA MGP_CASTEiJ_T0084907.1 MGP_CASTEiJ_G0031470.1 mouse_genomes_project 7 75329514 75349387 + MGP_CASTEiJ_P0084907 Tm6sf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084908.1 MGP_CASTEiJ_G0031470.1 mouse_genomes_project 7 75329923 75355088 + MGP_CASTEiJ_P0084908 Tm6sf1 protein_coding protein_coding MGP_CASTEiJ_T0084909.1 MGP_CASTEiJ_G0031470.1 mouse_genomes_project 7 75329942 75344854 + Tm6sf1 protein_coding retained_intron MGP_CASTEiJ_T0084910.1 MGP_CASTEiJ_G0031470.1 mouse_genomes_project 7 75330040 75336380 + Tm6sf1 protein_coding processed_transcript MGP_CASTEiJ_T0084911.1 MGP_CASTEiJ_G0031470.1 mouse_genomes_project 7 75330073 75355447 + MGP_CASTEiJ_P0084911 Tm6sf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084912.1 MGP_CASTEiJ_G0031470.1 mouse_genomes_project 7 75333651 75354432 + MGP_CASTEiJ_P0084912 Tm6sf1 protein_coding protein_coding MGP_CASTEiJ_T0084913.1 MGP_CASTEiJ_G0031470.1 mouse_genomes_project 7 75340719 75343399 + Tm6sf1 protein_coding retained_intron MGP_CASTEiJ_T0084914.1 MGP_CASTEiJ_G0031470.1 mouse_genomes_project 7 75344469 75354420 + Tm6sf1 protein_coding retained_intron MGP_CASTEiJ_T0081657.1 MGP_CASTEiJ_G0030655.1 mouse_genomes_project 7 2279273 2289904 + MGP_CASTEiJ_P0081657 Gm5065 protein_coding protein_coding MGP_CASTEiJ_T0101653.1 MGP_CASTEiJ_G0038493.1 mouse_genomes_project 7 7184162 7188251 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101274.1 MGP_CASTEiJ_G0038187.1 mouse_genomes_project 7 114300001 114300115 + Gm26147 snoRNA snoRNA MGP_CASTEiJ_T0084748.1 MGP_CASTEiJ_G0031441.1 mouse_genomes_project 7 73608745 73638333 - Rccd1 protein_coding retained_intron MGP_CASTEiJ_T0084756.1 MGP_CASTEiJ_G0031441.1 mouse_genomes_project 7 73634022 73642326 - Rccd1 protein_coding retained_intron MGP_CASTEiJ_T0084757.1 MGP_CASTEiJ_G0031441.1 mouse_genomes_project 7 73634022 73642642 - MGP_CASTEiJ_P0084757 Rccd1 protein_coding protein_coding MGP_CASTEiJ_T0084758.1 MGP_CASTEiJ_G0031441.1 mouse_genomes_project 7 73634062 73642652 - Rccd1 protein_coding retained_intron MGP_CASTEiJ_T0084759.1 MGP_CASTEiJ_G0031441.1 mouse_genomes_project 7 73634064 73637440 - Rccd1 protein_coding retained_intron MGP_CASTEiJ_T0084760.1 MGP_CASTEiJ_G0031441.1 mouse_genomes_project 7 73639150 73642321 - MGP_CASTEiJ_P0084760 Rccd1 protein_coding protein_coding MGP_CASTEiJ_T0084761.1 MGP_CASTEiJ_G0031441.1 mouse_genomes_project 7 73639462 73642354 - Rccd1 protein_coding retained_intron MGP_CASTEiJ_T0084762.1 MGP_CASTEiJ_G0031441.1 mouse_genomes_project 7 73640847 73642335 - Rccd1 protein_coding retained_intron MGP_CASTEiJ_T0084763.1 MGP_CASTEiJ_G0031441.1 mouse_genomes_project 7 73641969 73642599 - Rccd1 protein_coding processed_transcript MGP_CASTEiJ_T0082216.1 MGP_CASTEiJ_G0030840.1 mouse_genomes_project 7 14559854 14608858 - MGP_CASTEiJ_P0082216 Nectin2 protein_coding protein_coding MGP_CASTEiJ_T0082217.1 MGP_CASTEiJ_G0030840.1 mouse_genomes_project 7 14568516 14608858 - MGP_CASTEiJ_P0082217 Nectin2 protein_coding protein_coding MGP_CASTEiJ_T0084024.1 MGP_CASTEiJ_G0031281.1 mouse_genomes_project 7 38374970 38401433 + MGP_CASTEiJ_P0084024 Lmtk3 protein_coding protein_coding MGP_CASTEiJ_T0084025.1 MGP_CASTEiJ_G0031281.1 mouse_genomes_project 7 38375033 38383808 + MGP_CASTEiJ_P0084025 Lmtk3 protein_coding protein_coding MGP_CASTEiJ_T0084026.1 MGP_CASTEiJ_G0031281.1 mouse_genomes_project 7 38375179 38401399 + MGP_CASTEiJ_P0084026 Lmtk3 protein_coding protein_coding MGP_CASTEiJ_T0084027.1 MGP_CASTEiJ_G0031281.1 mouse_genomes_project 7 38378261 38401433 + MGP_CASTEiJ_P0084027 Lmtk3 protein_coding protein_coding MGP_CASTEiJ_T0084028.1 MGP_CASTEiJ_G0031281.1 mouse_genomes_project 7 38378268 38380830 + MGP_CASTEiJ_P0084028 Lmtk3 protein_coding protein_coding MGP_CASTEiJ_T0084029.1 MGP_CASTEiJ_G0031281.1 mouse_genomes_project 7 38378391 38380640 + Lmtk3 protein_coding retained_intron MGP_CASTEiJ_T0084030.1 MGP_CASTEiJ_G0031281.1 mouse_genomes_project 7 38379438 38385432 + MGP_CASTEiJ_P0084030 Lmtk3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084031.1 MGP_CASTEiJ_G0031281.1 mouse_genomes_project 7 38380626 38404180 + MGP_CASTEiJ_P0084031 Lmtk3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084032.1 MGP_CASTEiJ_G0031281.1 mouse_genomes_project 7 38380785 38385471 + MGP_CASTEiJ_P0084032 Lmtk3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084214.1 MGP_CASTEiJ_G0031334.1 mouse_genomes_project 7 42878437 43445177 + MGP_CASTEiJ_P0084214 Nell1 protein_coding protein_coding MGP_CASTEiJ_T0084215.1 MGP_CASTEiJ_G0031334.1 mouse_genomes_project 7 42878437 43770453 + MGP_CASTEiJ_P0084215 Nell1 protein_coding protein_coding MGP_CASTEiJ_T0084216.1 MGP_CASTEiJ_G0031334.1 mouse_genomes_project 7 42878642 43162539 + Nell1 protein_coding retained_intron MGP_CASTEiJ_T0084217.1 MGP_CASTEiJ_G0031334.1 mouse_genomes_project 7 42878932 43768554 + MGP_CASTEiJ_P0084217 Nell1 protein_coding protein_coding MGP_CASTEiJ_T0084218.1 MGP_CASTEiJ_G0031334.1 mouse_genomes_project 7 43007119 43119274 + Nell1 protein_coding processed_transcript MGP_CASTEiJ_T0005060.1 MGP_CASTEiJ_G0004318.1 mouse_genomes_project 7 26412539 26414104 - Gm45091 antisense antisense MGP_CASTEiJ_T0085902.1 MGP_CASTEiJ_G0031854.1 mouse_genomes_project 7 103643192 103644248 + MGP_CASTEiJ_P0085902 protein_coding protein_coding MGP_CASTEiJ_T0102525.1 MGP_CASTEiJ_G0039249.1 mouse_genomes_project 7 36356404 36356528 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102592.1 MGP_CASTEiJ_G0039316.1 mouse_genomes_project 7 98871336 98871798 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0086013.1 MGP_CASTEiJ_G0031888.1 mouse_genomes_project 7 105931035 105989755 - MGP_CASTEiJ_P0086013 Mrvi1 protein_coding protein_coding MGP_CASTEiJ_T0086014.1 MGP_CASTEiJ_G0031888.1 mouse_genomes_project 7 105931041 106008865 - MGP_CASTEiJ_P0086014 Mrvi1 protein_coding protein_coding MGP_CASTEiJ_T0086015.1 MGP_CASTEiJ_G0031888.1 mouse_genomes_project 7 105934114 106008560 - MGP_CASTEiJ_P0086015 Mrvi1 protein_coding protein_coding MGP_CASTEiJ_T0086016.1 MGP_CASTEiJ_G0031888.1 mouse_genomes_project 7 105983101 105987027 - Mrvi1 protein_coding processed_transcript MGP_CASTEiJ_T0086017.1 MGP_CASTEiJ_G0031888.1 mouse_genomes_project 7 105987686 105990033 - Mrvi1 protein_coding retained_intron MGP_CASTEiJ_T0086018.1 MGP_CASTEiJ_G0031888.1 mouse_genomes_project 7 105989736 106044805 - MGP_CASTEiJ_P0086018 Mrvi1 protein_coding protein_coding MGP_CASTEiJ_T0081882.1 MGP_CASTEiJ_G0030749.1 mouse_genomes_project 7 10776537 10802538 + MGP_CASTEiJ_P0081882 Zfp541 protein_coding protein_coding MGP_CASTEiJ_T0081653.1 MGP_CASTEiJ_G0030652.1 mouse_genomes_project 7 2068400 2076440 - MGP_CASTEiJ_P0081653 Rfpl4 protein_coding protein_coding MGP_CASTEiJ_T0081654.1 MGP_CASTEiJ_G0030652.1 mouse_genomes_project 7 2068400 2076440 - MGP_CASTEiJ_P0081654 Rfpl4 protein_coding protein_coding MGP_CASTEiJ_T0005087.1 MGP_CASTEiJ_G0004336.1 mouse_genomes_project 7 66536365 66553079 + Gm44686 antisense antisense MGP_CASTEiJ_T0081720.1 MGP_CASTEiJ_G0030684.1 mouse_genomes_project 7 4226974 4245290 - MGP_CASTEiJ_P0081720 Clcn4 protein_coding protein_coding MGP_CASTEiJ_T0100032.1 MGP_CASTEiJ_G0036945.1 mouse_genomes_project 7 104985965 104986019 + Gm24842 snRNA snRNA MGP_CASTEiJ_T0082349.1 MGP_CASTEiJ_G0030883.1 mouse_genomes_project 7 16830060 16850968 + MGP_CASTEiJ_P0082349 Phldb3 protein_coding protein_coding MGP_CASTEiJ_T0082350.1 MGP_CASTEiJ_G0030883.1 mouse_genomes_project 7 16830124 16850974 + MGP_CASTEiJ_P0082350 Phldb3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082351.1 MGP_CASTEiJ_G0030883.1 mouse_genomes_project 7 16830129 16850974 + MGP_CASTEiJ_P0082351 Phldb3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082352.1 MGP_CASTEiJ_G0030883.1 mouse_genomes_project 7 16830131 16850974 + MGP_CASTEiJ_P0082352 Phldb3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082353.1 MGP_CASTEiJ_G0030883.1 mouse_genomes_project 7 16830625 16850959 + MGP_CASTEiJ_P0082353 Phldb3 protein_coding protein_coding MGP_CASTEiJ_T0082354.1 MGP_CASTEiJ_G0030883.1 mouse_genomes_project 7 16838798 16846131 + Phldb3 protein_coding retained_intron MGP_CASTEiJ_T0082355.1 MGP_CASTEiJ_G0030883.1 mouse_genomes_project 7 16839209 16842061 + Phldb3 protein_coding processed_transcript MGP_CASTEiJ_T0085661.1 MGP_CASTEiJ_G0031727.1 mouse_genomes_project 7 99058058 99059971 - MGP_CASTEiJ_P0085661 4931431F19Rik protein_coding protein_coding MGP_CASTEiJ_T0102527.1 MGP_CASTEiJ_G0039251.1 mouse_genomes_project 7 36487530 36489134 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0085513.1 MGP_CASTEiJ_G0031625.1 mouse_genomes_project 7 96802058 96821994 + MGP_CASTEiJ_P0085513 Xndc1 protein_coding protein_coding MGP_CASTEiJ_T0085514.1 MGP_CASTEiJ_G0031625.1 mouse_genomes_project 7 96802067 96818519 + Xndc1 protein_coding retained_intron MGP_CASTEiJ_T0085515.1 MGP_CASTEiJ_G0031625.1 mouse_genomes_project 7 96802069 96806505 + Xndc1 protein_coding processed_transcript MGP_CASTEiJ_T0085516.1 MGP_CASTEiJ_G0031625.1 mouse_genomes_project 7 96802158 96816127 + MGP_CASTEiJ_P0085516 Xndc1 protein_coding protein_coding MGP_CASTEiJ_T0085519.1 MGP_CASTEiJ_G0031625.1 mouse_genomes_project 7 96802323 96821315 + MGP_CASTEiJ_P0085519 Xndc1 protein_coding protein_coding MGP_CASTEiJ_T0085523.1 MGP_CASTEiJ_G0031625.1 mouse_genomes_project 7 96814135 96817473 + Xndc1 protein_coding retained_intron MGP_CASTEiJ_T0085524.1 MGP_CASTEiJ_G0031625.1 mouse_genomes_project 7 96816990 96821997 + MGP_CASTEiJ_P0085524 Xndc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085525.1 MGP_CASTEiJ_G0031625.1 mouse_genomes_project 7 96819288 96820825 + Xndc1 protein_coding processed_transcript MGP_CASTEiJ_T0085526.1 MGP_CASTEiJ_G0031625.1 mouse_genomes_project 7 96819291 96820755 + Xndc1 protein_coding retained_intron MGP_CASTEiJ_T0005144.1 MGP_CASTEiJ_G0004374.1 mouse_genomes_project 7 117302372 117303311 + 1700069B07Rik antisense antisense MGP_CASTEiJ_T0005145.1 MGP_CASTEiJ_G0004374.1 mouse_genomes_project 7 117302486 117303309 + 1700069B07Rik antisense antisense MGP_CASTEiJ_T0101228.1 MGP_CASTEiJ_G0038141.1 mouse_genomes_project 7 36637060 36637151 + Gm26247 snoRNA snoRNA MGP_CASTEiJ_T0083165.1 MGP_CASTEiJ_G0031078.1 mouse_genomes_project 7 23379081 23381395 - MGP_CASTEiJ_P0083165 Tmem147 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085961.1 MGP_CASTEiJ_G0031876.1 mouse_genomes_project 7 104857618 104956662 - MGP_CASTEiJ_P0085961 Dennd5a protein_coding unknown_likely_coding MGP_CASTEiJ_T0085962.1 MGP_CASTEiJ_G0031876.1 mouse_genomes_project 7 104885033 104888125 - Dennd5a protein_coding retained_intron MGP_CASTEiJ_T0085963.1 MGP_CASTEiJ_G0031876.1 mouse_genomes_project 7 104885033 104956754 - MGP_CASTEiJ_P0085963 Dennd5a protein_coding protein_coding MGP_CASTEiJ_T0085964.1 MGP_CASTEiJ_G0031876.1 mouse_genomes_project 7 104885033 104956824 - MGP_CASTEiJ_P0085964 Dennd5a protein_coding protein_coding MGP_CASTEiJ_T0085965.1 MGP_CASTEiJ_G0031876.1 mouse_genomes_project 7 104887805 104888982 - Dennd5a protein_coding retained_intron MGP_CASTEiJ_T0085966.1 MGP_CASTEiJ_G0031876.1 mouse_genomes_project 7 104892050 104893442 - Dennd5a protein_coding retained_intron MGP_CASTEiJ_T0085967.1 MGP_CASTEiJ_G0031876.1 mouse_genomes_project 7 104900977 104913961 - Dennd5a protein_coding retained_intron MGP_CASTEiJ_T0085968.1 MGP_CASTEiJ_G0031876.1 mouse_genomes_project 7 104914536 104918255 - Dennd5a protein_coding processed_transcript MGP_CASTEiJ_T0085969.1 MGP_CASTEiJ_G0031876.1 mouse_genomes_project 7 104926618 104956677 - Dennd5a protein_coding processed_transcript MGP_CASTEiJ_T0085012.1 MGP_CASTEiJ_G0031515.1 mouse_genomes_project 7 80855142 81010327 + MGP_CASTEiJ_P0085012 protein_coding protein_coding MGP_CASTEiJ_T0082257.1 MGP_CASTEiJ_G0030859.1 mouse_genomes_project 7 16068605 16069577 + MGP_CASTEiJ_P0082257 Vmn1r179 protein_coding protein_coding MGP_CASTEiJ_T0011368.1 MGP_CASTEiJ_G0009556.1 mouse_genomes_project 7 139670329 139670400 + Gm27483 misc_RNA misc_RNA MGP_CASTEiJ_T0002223.1 MGP_CASTEiJ_G0002142.1 mouse_genomes_project 7 117809969 117810983 - TEC TEC MGP_CASTEiJ_T0083389.1 MGP_CASTEiJ_G0031120.1 mouse_genomes_project 7 26326824 26336966 - MGP_CASTEiJ_P0083389 Cebpg protein_coding protein_coding MGP_CASTEiJ_T0083390.1 MGP_CASTEiJ_G0031120.1 mouse_genomes_project 7 26330295 26331905 - Cebpg protein_coding retained_intron MGP_CASTEiJ_T0083391.1 MGP_CASTEiJ_G0031120.1 mouse_genomes_project 7 26330714 26336333 - MGP_CASTEiJ_P0083391 Cebpg protein_coding protein_coding MGP_CASTEiJ_T0083392.1 MGP_CASTEiJ_G0031120.1 mouse_genomes_project 7 26331264 26336376 - Cebpg protein_coding processed_transcript MGP_CASTEiJ_T0015214.1 MGP_CASTEiJ_G0013377.1 mouse_genomes_project 7 40903890 40904561 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005071.1 MGP_CASTEiJ_G0004324.1 mouse_genomes_project 7 36164086 36307205 - antisense antisense MGP_CASTEiJ_T0082958.1 MGP_CASTEiJ_G0031029.1 mouse_genomes_project 7 22503563 22511919 + MGP_CASTEiJ_P0082958 Zfp383 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082959.1 MGP_CASTEiJ_G0031029.1 mouse_genomes_project 7 22503844 22511913 + MGP_CASTEiJ_P0082959 Zfp383 protein_coding protein_coding MGP_CASTEiJ_T0084019.1 MGP_CASTEiJ_G0031280.1 mouse_genomes_project 7 38313843 38343028 - MGP_CASTEiJ_P0084019 Sult2b1 protein_coding protein_coding MGP_CASTEiJ_T0084020.1 MGP_CASTEiJ_G0031280.1 mouse_genomes_project 7 38313860 38326191 - MGP_CASTEiJ_P0084020 Sult2b1 protein_coding protein_coding MGP_CASTEiJ_T0084021.1 MGP_CASTEiJ_G0031280.1 mouse_genomes_project 7 38318959 38326191 - MGP_CASTEiJ_P0084021 Sult2b1 protein_coding protein_coding MGP_CASTEiJ_T0084022.1 MGP_CASTEiJ_G0031280.1 mouse_genomes_project 7 38318993 38326462 - Sult2b1 protein_coding processed_transcript MGP_CASTEiJ_T0084023.1 MGP_CASTEiJ_G0031280.1 mouse_genomes_project 7 38341889 38342946 - Sult2b1 protein_coding processed_transcript MGP_CASTEiJ_T0083651.1 MGP_CASTEiJ_G0031190.1 mouse_genomes_project 7 36635754 36637723 + protein_coding processed_transcript MGP_CASTEiJ_T0083652.1 MGP_CASTEiJ_G0031190.1 mouse_genomes_project 7 36635764 36637137 + protein_coding processed_transcript MGP_CASTEiJ_T0083653.1 MGP_CASTEiJ_G0031190.1 mouse_genomes_project 7 36635767 36639148 + protein_coding processed_transcript MGP_CASTEiJ_T0083654.1 MGP_CASTEiJ_G0031190.1 mouse_genomes_project 7 36635775 36639574 + protein_coding processed_transcript MGP_CASTEiJ_T0083655.1 MGP_CASTEiJ_G0031190.1 mouse_genomes_project 7 36635785 36639621 + protein_coding processed_transcript MGP_CASTEiJ_T0085834.1 MGP_CASTEiJ_G0031794.1 mouse_genomes_project 7 101598969 101599921 - MGP_CASTEiJ_P0085834 Olfr693 protein_coding protein_coding MGP_CASTEiJ_T0005022.1 MGP_CASTEiJ_G0004288.1 mouse_genomes_project 7 14683093 14685163 + Gm16174 antisense antisense MGP_CASTEiJ_T0081584.1 MGP_CASTEiJ_G0030625.1 mouse_genomes_project 7 1671950 1673183 - MGP_CASTEiJ_P0081584 Cox6b2 protein_coding protein_coding MGP_CASTEiJ_T0081585.1 MGP_CASTEiJ_G0030625.1 mouse_genomes_project 7 1671950 1673132 - MGP_CASTEiJ_P0081585 Cox6b2 protein_coding protein_coding MGP_CASTEiJ_T0081586.1 MGP_CASTEiJ_G0030625.1 mouse_genomes_project 7 1671950 1673183 - MGP_CASTEiJ_P0081586 Cox6b2 protein_coding protein_coding MGP_CASTEiJ_T0081587.1 MGP_CASTEiJ_G0030625.1 mouse_genomes_project 7 1671950 1673255 - MGP_CASTEiJ_P0081587 Cox6b2 protein_coding protein_coding MGP_CASTEiJ_T0081588.1 MGP_CASTEiJ_G0030625.1 mouse_genomes_project 7 1671952 1673169 - MGP_CASTEiJ_P0081588 Cox6b2 protein_coding protein_coding MGP_CASTEiJ_T0081589.1 MGP_CASTEiJ_G0030625.1 mouse_genomes_project 7 1671953 1673183 - MGP_CASTEiJ_P0081589 Cox6b2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081590.1 MGP_CASTEiJ_G0030625.1 mouse_genomes_project 7 1672013 1673198 - MGP_CASTEiJ_P0081590 Cox6b2 protein_coding protein_coding MGP_CASTEiJ_T0081591.1 MGP_CASTEiJ_G0030625.1 mouse_genomes_project 7 1672083 1672688 - Cox6b2 protein_coding retained_intron MGP_CASTEiJ_T0081592.1 MGP_CASTEiJ_G0030625.1 mouse_genomes_project 7 1672105 1673162 - MGP_CASTEiJ_P0081592 Cox6b2 protein_coding protein_coding MGP_CASTEiJ_T0085851.1 MGP_CASTEiJ_G0031810.1 mouse_genomes_project 7 101865623 101870148 - MGP_CASTEiJ_P0085851 Olfr710 protein_coding protein_coding MGP_CASTEiJ_T0004997.1 MGP_CASTEiJ_G0004274.1 mouse_genomes_project 7 550114 554197 + Gm15929 antisense antisense MGP_CASTEiJ_T0087492.1 MGP_CASTEiJ_G0032189.1 mouse_genomes_project 7 136988128 136993040 + MGP_CASTEiJ_P0087492 Prap1 protein_coding protein_coding MGP_CASTEiJ_T0102535.1 MGP_CASTEiJ_G0039259.1 mouse_genomes_project 7 40250551 40792666 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0086679.1 MGP_CASTEiJ_G0032023.1 mouse_genomes_project 7 122545594 122559719 + MGP_CASTEiJ_P0086679 Gdpd3 protein_coding protein_coding MGP_CASTEiJ_T0086680.1 MGP_CASTEiJ_G0032023.1 mouse_genomes_project 7 122546104 122547481 + Gdpd3 protein_coding retained_intron MGP_CASTEiJ_T0086681.1 MGP_CASTEiJ_G0032023.1 mouse_genomes_project 7 122546106 122547929 + Gdpd3 protein_coding retained_intron MGP_CASTEiJ_T0086682.1 MGP_CASTEiJ_G0032023.1 mouse_genomes_project 7 122546434 122547295 + Gdpd3 protein_coding retained_intron MGP_CASTEiJ_T0086683.1 MGP_CASTEiJ_G0032023.1 mouse_genomes_project 7 122547409 122550520 + Gdpd3 protein_coding retained_intron MGP_CASTEiJ_T0086684.1 MGP_CASTEiJ_G0032023.1 mouse_genomes_project 7 122547787 122559723 + Gdpd3 protein_coding retained_intron MGP_CASTEiJ_T0100014.1 MGP_CASTEiJ_G0036927.1 mouse_genomes_project 7 66658195 66658300 - Gm26176 snRNA snRNA MGP_CASTEiJ_T0008667.1 MGP_CASTEiJ_G0007011.1 mouse_genomes_project 7 61029285 61043766 - Gm16158 lincRNA lincRNA MGP_CASTEiJ_T0008668.1 MGP_CASTEiJ_G0007011.1 mouse_genomes_project 7 61029285 61043747 - Gm16158 lincRNA lincRNA MGP_CASTEiJ_T0085639.1 MGP_CASTEiJ_G0031705.1 mouse_genomes_project 7 98614982 98615933 + MGP_CASTEiJ_P0085639 Olfr628 protein_coding protein_coding MGP_CASTEiJ_T0084688.1 MGP_CASTEiJ_G0031425.1 mouse_genomes_project 7 72979416 72994905 - MGP_CASTEiJ_P0084688 Plin1 protein_coding protein_coding MGP_CASTEiJ_T0084689.1 MGP_CASTEiJ_G0031425.1 mouse_genomes_project 7 72981236 72994293 - MGP_CASTEiJ_P0084689 Plin1 protein_coding protein_coding MGP_CASTEiJ_T0084690.1 MGP_CASTEiJ_G0031425.1 mouse_genomes_project 7 72981236 72994894 - MGP_CASTEiJ_P0084690 Plin1 protein_coding protein_coding MGP_CASTEiJ_T0084691.1 MGP_CASTEiJ_G0031425.1 mouse_genomes_project 7 72983150 72984061 - MGP_CASTEiJ_P0084691 Plin1 protein_coding protein_coding MGP_CASTEiJ_T0084692.1 MGP_CASTEiJ_G0031425.1 mouse_genomes_project 7 72985802 72990486 - MGP_CASTEiJ_P0084692 Plin1 protein_coding protein_coding MGP_CASTEiJ_T0084693.1 MGP_CASTEiJ_G0031425.1 mouse_genomes_project 7 72987233 72994953 - MGP_CASTEiJ_P0084693 Plin1 protein_coding protein_coding MGP_CASTEiJ_T0084694.1 MGP_CASTEiJ_G0031425.1 mouse_genomes_project 7 72989668 72995021 - MGP_CASTEiJ_P0084694 Plin1 protein_coding protein_coding MGP_CASTEiJ_T0005170.1 MGP_CASTEiJ_G0004395.1 mouse_genomes_project 7 138628359 138632033 - Gm16982 antisense antisense MGP_CASTEiJ_T0085704.1 MGP_CASTEiJ_G0031750.1 mouse_genomes_project 7 99668675 99669639 + MGP_CASTEiJ_P0085704 Olfr661 protein_coding protein_coding MGP_CASTEiJ_T0083018.1 MGP_CASTEiJ_G0031048.1 mouse_genomes_project 7 22927558 22945475 + MGP_CASTEiJ_P0083018 Clip3 protein_coding protein_coding MGP_CASTEiJ_T0083019.1 MGP_CASTEiJ_G0031048.1 mouse_genomes_project 7 22927614 22928561 + Clip3 protein_coding retained_intron MGP_CASTEiJ_T0083020.1 MGP_CASTEiJ_G0031048.1 mouse_genomes_project 7 22927615 22932912 + MGP_CASTEiJ_P0083020 Clip3 protein_coding protein_coding MGP_CASTEiJ_T0083021.1 MGP_CASTEiJ_G0031048.1 mouse_genomes_project 7 22927625 22932668 + MGP_CASTEiJ_P0083021 Clip3 protein_coding protein_coding MGP_CASTEiJ_T0083022.1 MGP_CASTEiJ_G0031048.1 mouse_genomes_project 7 22927844 22932679 + MGP_CASTEiJ_P0083022 Clip3 protein_coding protein_coding MGP_CASTEiJ_T0083023.1 MGP_CASTEiJ_G0031048.1 mouse_genomes_project 7 22932861 22937037 + Clip3 protein_coding processed_transcript MGP_CASTEiJ_T0083024.1 MGP_CASTEiJ_G0031048.1 mouse_genomes_project 7 22941789 22944411 + Clip3 protein_coding processed_transcript MGP_CASTEiJ_T0082543.1 MGP_CASTEiJ_G0030925.1 mouse_genomes_project 7 18108738 18124110 - MGP_CASTEiJ_P0082543 Cyp2s1 protein_coding protein_coding MGP_CASTEiJ_T0082544.1 MGP_CASTEiJ_G0030925.1 mouse_genomes_project 7 18108738 18123850 - MGP_CASTEiJ_P0082544 Cyp2s1 protein_coding protein_coding MGP_CASTEiJ_T0082545.1 MGP_CASTEiJ_G0030925.1 mouse_genomes_project 7 18110415 18123755 - Cyp2s1 protein_coding retained_intron MGP_CASTEiJ_T0082546.1 MGP_CASTEiJ_G0030925.1 mouse_genomes_project 7 18115582 18122589 - MGP_CASTEiJ_P0082546 Cyp2s1 protein_coding protein_coding MGP_CASTEiJ_T0102462.1 MGP_CASTEiJ_G0039187.1 mouse_genomes_project 7 7153672 7154917 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015195.1 MGP_CASTEiJ_G0013358.1 mouse_genomes_project 7 33063703 33065196 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017687.1 MGP_CASTEiJ_G0015017.1 mouse_genomes_project 7 138962101 138962897 - processed_transcript processed_transcript MGP_CASTEiJ_T0083711.1 MGP_CASTEiJ_G0031200.1 mouse_genomes_project 7 36923353 36927936 + MGP_CASTEiJ_P0083711 Fam71e1 protein_coding protein_coding MGP_CASTEiJ_T0083712.1 MGP_CASTEiJ_G0031200.1 mouse_genomes_project 7 36923360 36927104 + Fam71e1 protein_coding retained_intron MGP_CASTEiJ_T0083713.1 MGP_CASTEiJ_G0031200.1 mouse_genomes_project 7 36923371 36923921 + MGP_CASTEiJ_P0083713 Fam71e1 protein_coding protein_coding MGP_CASTEiJ_T0083714.1 MGP_CASTEiJ_G0031200.1 mouse_genomes_project 7 36923430 36927929 + MGP_CASTEiJ_P0083714 Fam71e1 protein_coding protein_coding MGP_CASTEiJ_T0083715.1 MGP_CASTEiJ_G0031200.1 mouse_genomes_project 7 36923440 36927929 + MGP_CASTEiJ_P0083715 Fam71e1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083716.1 MGP_CASTEiJ_G0031200.1 mouse_genomes_project 7 36923444 36928282 + Fam71e1 protein_coding retained_intron MGP_CASTEiJ_T0083717.1 MGP_CASTEiJ_G0031200.1 mouse_genomes_project 7 36923444 36924769 + Fam71e1 protein_coding retained_intron MGP_CASTEiJ_T0083718.1 MGP_CASTEiJ_G0031200.1 mouse_genomes_project 7 36923466 36927133 + Fam71e1 protein_coding retained_intron MGP_CASTEiJ_T0083719.1 MGP_CASTEiJ_G0031200.1 mouse_genomes_project 7 36927185 36927928 + Fam71e1 protein_coding processed_transcript MGP_CASTEiJ_T0086782.1 MGP_CASTEiJ_G0032037.1 mouse_genomes_project 7 122740028 122761332 + MGP_CASTEiJ_P0086782 Sez6l2 protein_coding protein_coding MGP_CASTEiJ_T0086783.1 MGP_CASTEiJ_G0032037.1 mouse_genomes_project 7 122740049 122748957 + MGP_CASTEiJ_P0086783 Sez6l2 protein_coding protein_coding MGP_CASTEiJ_T0086784.1 MGP_CASTEiJ_G0032037.1 mouse_genomes_project 7 122740194 122761322 + MGP_CASTEiJ_P0086784 Sez6l2 protein_coding protein_coding MGP_CASTEiJ_T0086785.1 MGP_CASTEiJ_G0032037.1 mouse_genomes_project 7 122740431 122760996 + MGP_CASTEiJ_P0086785 Sez6l2 protein_coding protein_coding MGP_CASTEiJ_T0086786.1 MGP_CASTEiJ_G0032037.1 mouse_genomes_project 7 122743336 122750130 + MGP_CASTEiJ_P0086786 Sez6l2 protein_coding protein_coding MGP_CASTEiJ_T0086787.1 MGP_CASTEiJ_G0032037.1 mouse_genomes_project 7 122758451 122760996 + Sez6l2 protein_coding retained_intron MGP_CASTEiJ_T0086788.1 MGP_CASTEiJ_G0032037.1 mouse_genomes_project 7 122758677 122761330 + MGP_CASTEiJ_P0086788 Sez6l2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081617.1 MGP_CASTEiJ_G0030634.1 mouse_genomes_project 7 1817026 1835351 + MGP_CASTEiJ_P0081617 Isoc2a protein_coding protein_coding MGP_CASTEiJ_T0083134.1 MGP_CASTEiJ_G0031068.1 mouse_genomes_project 7 23217003 23236927 - MGP_CASTEiJ_P0083134 Kmt2b protein_coding protein_coding MGP_CASTEiJ_T0083135.1 MGP_CASTEiJ_G0031068.1 mouse_genomes_project 7 23217003 23236918 - MGP_CASTEiJ_P0083135 Kmt2b protein_coding protein_coding MGP_CASTEiJ_T0083136.1 MGP_CASTEiJ_G0031068.1 mouse_genomes_project 7 23217005 23233547 - MGP_CASTEiJ_P0083136 Kmt2b protein_coding protein_coding MGP_CASTEiJ_T0083137.1 MGP_CASTEiJ_G0031068.1 mouse_genomes_project 7 23217898 23218809 - Kmt2b protein_coding retained_intron MGP_CASTEiJ_T0083138.1 MGP_CASTEiJ_G0031068.1 mouse_genomes_project 7 23221311 23222317 - Kmt2b protein_coding retained_intron MGP_CASTEiJ_T0083139.1 MGP_CASTEiJ_G0031068.1 mouse_genomes_project 7 23223715 23225307 - Kmt2b protein_coding processed_transcript MGP_CASTEiJ_T0083140.1 MGP_CASTEiJ_G0031068.1 mouse_genomes_project 7 23225172 23227164 - Kmt2b protein_coding processed_transcript MGP_CASTEiJ_T0083141.1 MGP_CASTEiJ_G0031068.1 mouse_genomes_project 7 23232471 23233281 - Kmt2b protein_coding processed_transcript MGP_CASTEiJ_T0015112.1 MGP_CASTEiJ_G0013275.1 mouse_genomes_project 7 902118 902398 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0086871.1 MGP_CASTEiJ_G0032055.1 mouse_genomes_project 7 123058097 123070311 + MGP_CASTEiJ_P0086871 Zfp771 protein_coding protein_coding MGP_CASTEiJ_T0086872.1 MGP_CASTEiJ_G0032055.1 mouse_genomes_project 7 123060850 123061461 + Zfp771 protein_coding processed_transcript MGP_CASTEiJ_T0086873.1 MGP_CASTEiJ_G0032055.1 mouse_genomes_project 7 123060936 123069380 + MGP_CASTEiJ_P0086873 Zfp771 protein_coding protein_coding MGP_CASTEiJ_T0084869.1 MGP_CASTEiJ_G0031458.1 mouse_genomes_project 7 74626504 74772384 + MGP_CASTEiJ_P0084869 Pde8a protein_coding protein_coding MGP_CASTEiJ_T0084870.1 MGP_CASTEiJ_G0031458.1 mouse_genomes_project 7 74726458 74751713 + Pde8a protein_coding processed_transcript MGP_CASTEiJ_T0084871.1 MGP_CASTEiJ_G0031458.1 mouse_genomes_project 7 74738921 74755917 + Pde8a protein_coding processed_transcript MGP_CASTEiJ_T0002247.1 MGP_CASTEiJ_G0002166.1 mouse_genomes_project 7 140222785 140223017 + TEC TEC MGP_CASTEiJ_T0008778.1 MGP_CASTEiJ_G0007085.1 mouse_genomes_project 7 120626708 120633247 + Gm45092 lincRNA lincRNA MGP_CASTEiJ_T0002189.1 MGP_CASTEiJ_G0002108.1 mouse_genomes_project 7 68591995 68593614 + TEC TEC MGP_CASTEiJ_T0017654.1 MGP_CASTEiJ_G0014998.1 mouse_genomes_project 7 95989609 95998955 - Gm20476 processed_transcript processed_transcript MGP_CASTEiJ_T0087426.1 MGP_CASTEiJ_G0032173.1 mouse_genomes_project 7 135894589 135913195 + MGP_CASTEiJ_P0087426 Dpysl4 protein_coding protein_coding MGP_CASTEiJ_T0087427.1 MGP_CASTEiJ_G0032173.1 mouse_genomes_project 7 135894590 135903071 + Dpysl4 protein_coding processed_transcript MGP_CASTEiJ_T0087428.1 MGP_CASTEiJ_G0032173.1 mouse_genomes_project 7 135894615 135912254 + Dpysl4 protein_coding retained_intron MGP_CASTEiJ_T0087429.1 MGP_CASTEiJ_G0032173.1 mouse_genomes_project 7 135894616 135912243 + Dpysl4 protein_coding retained_intron MGP_CASTEiJ_T0087430.1 MGP_CASTEiJ_G0032173.1 mouse_genomes_project 7 135896953 135903037 + MGP_CASTEiJ_P0087430 Dpysl4 protein_coding protein_coding MGP_CASTEiJ_T0087431.1 MGP_CASTEiJ_G0032173.1 mouse_genomes_project 7 135897835 135912239 + MGP_CASTEiJ_P0087431 Dpysl4 protein_coding protein_coding MGP_CASTEiJ_T0082028.1 MGP_CASTEiJ_G0030789.1 mouse_genomes_project 7 12857653 12863093 + MGP_CASTEiJ_P0082028 Igfl3 protein_coding protein_coding MGP_CASTEiJ_T0101230.1 MGP_CASTEiJ_G0038143.1 mouse_genomes_project 7 36639227 36639317 + Snord88a snoRNA snoRNA MGP_CASTEiJ_T0085506.1 MGP_CASTEiJ_G0031624.1 mouse_genomes_project 7 96752376 96801706 - MGP_CASTEiJ_P0085506 protein_coding protein_coding MGP_CASTEiJ_T0085507.1 MGP_CASTEiJ_G0031624.1 mouse_genomes_project 7 96752391 96802017 - MGP_CASTEiJ_P0085507 protein_coding protein_coding MGP_CASTEiJ_T0085508.1 MGP_CASTEiJ_G0031624.1 mouse_genomes_project 7 96753361 96796954 - MGP_CASTEiJ_P0085508 protein_coding protein_coding MGP_CASTEiJ_T0085509.1 MGP_CASTEiJ_G0031624.1 mouse_genomes_project 7 96753662 96757697 - protein_coding retained_intron MGP_CASTEiJ_T0085510.1 MGP_CASTEiJ_G0031624.1 mouse_genomes_project 7 96761891 96801665 - MGP_CASTEiJ_P0085510 protein_coding protein_coding MGP_CASTEiJ_T0085511.1 MGP_CASTEiJ_G0031624.1 mouse_genomes_project 7 96767595 96801676 - MGP_CASTEiJ_P0085511 protein_coding protein_coding MGP_CASTEiJ_T0085512.1 MGP_CASTEiJ_G0031624.1 mouse_genomes_project 7 96768148 96801706 - protein_coding processed_transcript MGP_CASTEiJ_T0082629.1 MGP_CASTEiJ_G0030948.1 mouse_genomes_project 7 19686692 19710736 - MGP_CASTEiJ_P0082629 Ltbp4 protein_coding protein_coding MGP_CASTEiJ_T0086553.1 MGP_CASTEiJ_G0032002.1 mouse_genomes_project 7 122115973 122122986 - MGP_CASTEiJ_P0086553 Spns1 protein_coding protein_coding MGP_CASTEiJ_T0086554.1 MGP_CASTEiJ_G0032002.1 mouse_genomes_project 7 122115982 122123320 - Spns1 protein_coding retained_intron MGP_CASTEiJ_T0086555.1 MGP_CASTEiJ_G0032002.1 mouse_genomes_project 7 122115982 122123320 - MGP_CASTEiJ_P0086555 Spns1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086556.1 MGP_CASTEiJ_G0032002.1 mouse_genomes_project 7 122115982 122123320 - MGP_CASTEiJ_P0086556 Spns1 protein_coding protein_coding MGP_CASTEiJ_T0086557.1 MGP_CASTEiJ_G0032002.1 mouse_genomes_project 7 122116658 122122938 - MGP_CASTEiJ_P0086557 Spns1 protein_coding protein_coding MGP_CASTEiJ_T0086558.1 MGP_CASTEiJ_G0032002.1 mouse_genomes_project 7 122117143 122118843 - Spns1 protein_coding retained_intron MGP_CASTEiJ_T0086559.1 MGP_CASTEiJ_G0032002.1 mouse_genomes_project 7 122117503 122123004 - MGP_CASTEiJ_P0086559 Spns1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086560.1 MGP_CASTEiJ_G0032002.1 mouse_genomes_project 7 122117787 122118486 - Spns1 protein_coding retained_intron MGP_CASTEiJ_T0086561.1 MGP_CASTEiJ_G0032002.1 mouse_genomes_project 7 122118668 122123116 - MGP_CASTEiJ_P0086561 Spns1 protein_coding protein_coding MGP_CASTEiJ_T0086562.1 MGP_CASTEiJ_G0032002.1 mouse_genomes_project 7 122119567 122120266 - Spns1 protein_coding retained_intron MGP_CASTEiJ_T0086563.1 MGP_CASTEiJ_G0032002.1 mouse_genomes_project 7 122120178 122122636 - Spns1 protein_coding processed_transcript MGP_CASTEiJ_T0086564.1 MGP_CASTEiJ_G0032002.1 mouse_genomes_project 7 122122605 122123330 - Spns1 protein_coding processed_transcript MGP_CASTEiJ_T0082238.1 MGP_CASTEiJ_G0030845.1 mouse_genomes_project 7 14721232 14731526 - MGP_CASTEiJ_P0082238 Ceacam16 protein_coding protein_coding MGP_CASTEiJ_T0086084.1 MGP_CASTEiJ_G0031902.1 mouse_genomes_project 7 108700824 108766179 + MGP_CASTEiJ_P0086084 Far1 protein_coding protein_coding MGP_CASTEiJ_T0086085.1 MGP_CASTEiJ_G0031902.1 mouse_genomes_project 7 108700851 108745165 + Far1 protein_coding retained_intron MGP_CASTEiJ_T0086086.1 MGP_CASTEiJ_G0031902.1 mouse_genomes_project 7 108700851 108766179 + MGP_CASTEiJ_P0086086 Far1 protein_coding protein_coding MGP_CASTEiJ_T0086087.1 MGP_CASTEiJ_G0031902.1 mouse_genomes_project 7 108700851 108742235 + MGP_CASTEiJ_P0086087 Far1 protein_coding protein_coding MGP_CASTEiJ_T0086088.1 MGP_CASTEiJ_G0031902.1 mouse_genomes_project 7 108700852 108765125 + MGP_CASTEiJ_P0086088 Far1 protein_coding protein_coding MGP_CASTEiJ_T0086089.1 MGP_CASTEiJ_G0031902.1 mouse_genomes_project 7 108700867 108744700 + MGP_CASTEiJ_P0086089 Far1 protein_coding protein_coding MGP_CASTEiJ_T0086090.1 MGP_CASTEiJ_G0031902.1 mouse_genomes_project 7 108700871 108715217 + Far1 protein_coding retained_intron MGP_CASTEiJ_T0086091.1 MGP_CASTEiJ_G0031902.1 mouse_genomes_project 7 108701088 108734023 + MGP_CASTEiJ_P0086091 Far1 protein_coding protein_coding MGP_CASTEiJ_T0086092.1 MGP_CASTEiJ_G0031902.1 mouse_genomes_project 7 108742112 108747816 + Far1 protein_coding retained_intron MGP_CASTEiJ_T0086093.1 MGP_CASTEiJ_G0031902.1 mouse_genomes_project 7 108755581 108762823 + Far1 protein_coding retained_intron MGP_CASTEiJ_T0086094.1 MGP_CASTEiJ_G0031902.1 mouse_genomes_project 7 108760769 108762878 + Far1 protein_coding retained_intron MGP_CASTEiJ_T0005039.1 MGP_CASTEiJ_G0004301.1 mouse_genomes_project 7 21710139 21711776 - Gm16282 antisense antisense MGP_CASTEiJ_T0084764.1 MGP_CASTEiJ_G0031443.1 mouse_genomes_project 7 73643238 73658705 - MGP_CASTEiJ_P0084764 Unc45a protein_coding protein_coding MGP_CASTEiJ_T0084765.1 MGP_CASTEiJ_G0031443.1 mouse_genomes_project 7 73643241 73657930 - MGP_CASTEiJ_P0084765 Unc45a protein_coding protein_coding MGP_CASTEiJ_T0084766.1 MGP_CASTEiJ_G0031443.1 mouse_genomes_project 7 73643242 73657882 - MGP_CASTEiJ_P0084766 Unc45a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084767.1 MGP_CASTEiJ_G0031443.1 mouse_genomes_project 7 73643272 73657473 - MGP_CASTEiJ_P0084767 Unc45a protein_coding protein_coding MGP_CASTEiJ_T0084768.1 MGP_CASTEiJ_G0031443.1 mouse_genomes_project 7 73652102 73657917 - MGP_CASTEiJ_P0084768 Unc45a protein_coding protein_coding MGP_CASTEiJ_T0084769.1 MGP_CASTEiJ_G0031443.1 mouse_genomes_project 7 73656181 73657912 - Unc45a protein_coding retained_intron MGP_CASTEiJ_T0084770.1 MGP_CASTEiJ_G0031443.1 mouse_genomes_project 7 73656731 73657861 - Unc45a protein_coding retained_intron MGP_CASTEiJ_T0084771.1 MGP_CASTEiJ_G0031443.1 mouse_genomes_project 7 73657019 73657928 - MGP_CASTEiJ_P0084771 Unc45a protein_coding protein_coding MGP_CASTEiJ_T0084772.1 MGP_CASTEiJ_G0031443.1 mouse_genomes_project 7 73657023 73657930 - Unc45a protein_coding processed_transcript MGP_CASTEiJ_T0084773.1 MGP_CASTEiJ_G0031443.1 mouse_genomes_project 7 73657414 73657922 - Unc45a protein_coding retained_intron MGP_CASTEiJ_T0083527.1 MGP_CASTEiJ_G0031147.1 mouse_genomes_project 7 33136143 33161141 - MGP_CASTEiJ_P0083527 AI987944 protein_coding protein_coding MGP_CASTEiJ_T0086359.1 MGP_CASTEiJ_G0031961.1 mouse_genomes_project 7 116463483 116535616 - MGP_CASTEiJ_P0086359 Cdr2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0086362.1 MGP_CASTEiJ_G0031961.1 mouse_genomes_project 7 116510473 116535314 - Cdr2 protein_coding processed_transcript MGP_CASTEiJ_T0086363.1 MGP_CASTEiJ_G0031961.1 mouse_genomes_project 7 116510473 116535837 - MGP_CASTEiJ_P0086363 Cdr2 protein_coding protein_coding MGP_CASTEiJ_T0100009.1 MGP_CASTEiJ_G0036922.1 mouse_genomes_project 7 48106956 48107063 - Gm24116 snRNA snRNA MGP_CASTEiJ_T0010620.1 MGP_CASTEiJ_G0008808.1 mouse_genomes_project 7 136659184 136659293 + Mir6401 miRNA miRNA MGP_CASTEiJ_T0084331.1 MGP_CASTEiJ_G0031359.1 mouse_genomes_project 7 54931057 54932709 + MGP_CASTEiJ_P0084331 Ndn protein_coding protein_coding MGP_CASTEiJ_T0002230.1 MGP_CASTEiJ_G0002149.1 mouse_genomes_project 7 118656874 118657867 - TEC TEC MGP_CASTEiJ_T0082066.1 MGP_CASTEiJ_G0030802.1 mouse_genomes_project 7 13835372 13843503 + MGP_CASTEiJ_P0082066 Dmwd protein_coding protein_coding MGP_CASTEiJ_T0082067.1 MGP_CASTEiJ_G0030802.1 mouse_genomes_project 7 13835403 13843503 + MGP_CASTEiJ_P0082067 Dmwd protein_coding protein_coding MGP_CASTEiJ_T0082068.1 MGP_CASTEiJ_G0030802.1 mouse_genomes_project 7 13837139 13843502 + Dmwd protein_coding processed_transcript MGP_CASTEiJ_T0082069.1 MGP_CASTEiJ_G0030802.1 mouse_genomes_project 7 13837172 13843229 + Dmwd protein_coding processed_transcript MGP_CASTEiJ_T0005179.1 MGP_CASTEiJ_G0004401.1 mouse_genomes_project 7 140721312 140722945 + Gm15579 antisense antisense MGP_CASTEiJ_T0086340.1 MGP_CASTEiJ_G0031958.1 mouse_genomes_project 7 116197239 116262174 + MGP_CASTEiJ_P0086340 BC030336 protein_coding protein_coding MGP_CASTEiJ_T0084832.1 MGP_CASTEiJ_G0031451.1 mouse_genomes_project 7 74224832 74240851 + MGP_CASTEiJ_P0084832 Zscan2 protein_coding protein_coding MGP_CASTEiJ_T0084833.1 MGP_CASTEiJ_G0031451.1 mouse_genomes_project 7 74224863 74227376 + MGP_CASTEiJ_P0084833 Zscan2 protein_coding protein_coding MGP_CASTEiJ_T0084834.1 MGP_CASTEiJ_G0031451.1 mouse_genomes_project 7 74224865 74241770 + MGP_CASTEiJ_P0084834 Zscan2 protein_coding protein_coding MGP_CASTEiJ_T0084835.1 MGP_CASTEiJ_G0031451.1 mouse_genomes_project 7 74226020 74242406 + MGP_CASTEiJ_P0084835 Zscan2 protein_coding protein_coding MGP_CASTEiJ_T0084836.1 MGP_CASTEiJ_G0031451.1 mouse_genomes_project 7 74226807 74240980 + MGP_CASTEiJ_P0084836 Zscan2 protein_coding protein_coding MGP_CASTEiJ_T0085697.1 MGP_CASTEiJ_G0031743.1 mouse_genomes_project 7 99532201 99533247 + MGP_CASTEiJ_P0085697 Olfr653 protein_coding protein_coding MGP_CASTEiJ_T0087602.1 MGP_CASTEiJ_G0032232.1 mouse_genomes_project 7 137954096 137957510 - MGP_CASTEiJ_P0087602 Ifitm3 protein_coding protein_coding MGP_CASTEiJ_T0086685.1 MGP_CASTEiJ_G0032024.1 mouse_genomes_project 7 122561048 122564611 + MGP_CASTEiJ_P0086685 Ypel3 protein_coding protein_coding MGP_CASTEiJ_T0086686.1 MGP_CASTEiJ_G0032024.1 mouse_genomes_project 7 122561068 122564608 + MGP_CASTEiJ_P0086686 Ypel3 protein_coding protein_coding MGP_CASTEiJ_T0086687.1 MGP_CASTEiJ_G0032024.1 mouse_genomes_project 7 122561071 122562195 + MGP_CASTEiJ_P0086687 Ypel3 protein_coding protein_coding MGP_CASTEiJ_T0086688.1 MGP_CASTEiJ_G0032024.1 mouse_genomes_project 7 122561092 122564610 + Ypel3 protein_coding processed_transcript MGP_CASTEiJ_T0086689.1 MGP_CASTEiJ_G0032024.1 mouse_genomes_project 7 122561092 122562520 + Ypel3 protein_coding processed_transcript MGP_CASTEiJ_T0086690.1 MGP_CASTEiJ_G0032024.1 mouse_genomes_project 7 122561094 122564611 + MGP_CASTEiJ_P0086690 Ypel3 protein_coding protein_coding MGP_CASTEiJ_T0086691.1 MGP_CASTEiJ_G0032024.1 mouse_genomes_project 7 122561098 122564162 + MGP_CASTEiJ_P0086691 Ypel3 protein_coding protein_coding MGP_CASTEiJ_T0086692.1 MGP_CASTEiJ_G0032024.1 mouse_genomes_project 7 122561240 122561968 + MGP_CASTEiJ_P0086692 Ypel3 protein_coding protein_coding MGP_CASTEiJ_T0086693.1 MGP_CASTEiJ_G0032024.1 mouse_genomes_project 7 122561306 122564543 + MGP_CASTEiJ_P0086693 Ypel3 protein_coding protein_coding MGP_CASTEiJ_T0086694.1 MGP_CASTEiJ_G0032024.1 mouse_genomes_project 7 122561601 122564328 + Ypel3 protein_coding processed_transcript MGP_CASTEiJ_T0086695.1 MGP_CASTEiJ_G0032024.1 mouse_genomes_project 7 122561674 122562387 + Ypel3 protein_coding retained_intron MGP_CASTEiJ_T0084741.1 MGP_CASTEiJ_G0031440.1 mouse_genomes_project 7 73585384 73607101 + MGP_CASTEiJ_P0084741 Vps33b protein_coding protein_coding MGP_CASTEiJ_T0084742.1 MGP_CASTEiJ_G0031440.1 mouse_genomes_project 7 73585414 73607093 + MGP_CASTEiJ_P0084742 Vps33b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084743.1 MGP_CASTEiJ_G0031440.1 mouse_genomes_project 7 73585469 73601280 + Vps33b protein_coding retained_intron MGP_CASTEiJ_T0084744.1 MGP_CASTEiJ_G0031440.1 mouse_genomes_project 7 73585475 73607091 + MGP_CASTEiJ_P0084744 Vps33b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084745.1 MGP_CASTEiJ_G0031440.1 mouse_genomes_project 7 73589878 73599605 + Vps33b protein_coding processed_transcript MGP_CASTEiJ_T0084746.1 MGP_CASTEiJ_G0031440.1 mouse_genomes_project 7 73605539 73607274 + MGP_CASTEiJ_P0084746 Vps33b protein_coding protein_coding MGP_CASTEiJ_T0084747.1 MGP_CASTEiJ_G0031440.1 mouse_genomes_project 7 73605587 73606402 + Vps33b protein_coding retained_intron MGP_CASTEiJ_T0085248.1 MGP_CASTEiJ_G0031569.1 mouse_genomes_project 7 93173759 93188698 + MGP_CASTEiJ_P0085248 Prkrir protein_coding protein_coding MGP_CASTEiJ_T0085249.1 MGP_CASTEiJ_G0031569.1 mouse_genomes_project 7 93173759 93186003 + MGP_CASTEiJ_P0085249 Prkrir protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085250.1 MGP_CASTEiJ_G0031569.1 mouse_genomes_project 7 93173984 93185749 + MGP_CASTEiJ_P0085250 Prkrir protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085251.1 MGP_CASTEiJ_G0031569.1 mouse_genomes_project 7 93180508 93185893 + Prkrir protein_coding processed_transcript MGP_CASTEiJ_T0010628.1 MGP_CASTEiJ_G0008816.1 mouse_genomes_project 7 139760336 139760409 - Mir483 miRNA miRNA MGP_CASTEiJ_T0082125.1 MGP_CASTEiJ_G0030816.1 mouse_genomes_project 7 14077375 14084700 - MGP_CASTEiJ_P0082125 Fosb protein_coding protein_coding MGP_CASTEiJ_T0085595.1 MGP_CASTEiJ_G0031663.1 mouse_genomes_project 7 97735202 97736159 - MGP_CASTEiJ_P0085595 Olfr575 protein_coding protein_coding MGP_CASTEiJ_T0005126.1 MGP_CASTEiJ_G0004362.1 mouse_genomes_project 7 99218222 99218933 - antisense antisense MGP_CASTEiJ_T0102523.1 MGP_CASTEiJ_G0039247.1 mouse_genomes_project 7 36308952 36309169 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0083166.1 MGP_CASTEiJ_G0031079.1 mouse_genomes_project 7 23381749 23384794 - MGP_CASTEiJ_P0083166 Gapdhs protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083167.1 MGP_CASTEiJ_G0031079.1 mouse_genomes_project 7 23381754 23397861 - MGP_CASTEiJ_P0083167 Gapdhs protein_coding protein_coding MGP_CASTEiJ_T0086019.1 MGP_CASTEiJ_G0031889.1 mouse_genomes_project 7 106088790 106120813 + MGP_CASTEiJ_P0086019 Ctr9 protein_coding protein_coding MGP_CASTEiJ_T0086020.1 MGP_CASTEiJ_G0031889.1 mouse_genomes_project 7 106088834 106109050 + Ctr9 protein_coding retained_intron MGP_CASTEiJ_T0086021.1 MGP_CASTEiJ_G0031889.1 mouse_genomes_project 7 106088846 106118498 + MGP_CASTEiJ_P0086021 Ctr9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0086022.1 MGP_CASTEiJ_G0031889.1 mouse_genomes_project 7 106088852 106090654 + Ctr9 protein_coding retained_intron MGP_CASTEiJ_T0086023.1 MGP_CASTEiJ_G0031889.1 mouse_genomes_project 7 106090054 106093905 + Ctr9 protein_coding processed_transcript MGP_CASTEiJ_T0086024.1 MGP_CASTEiJ_G0031889.1 mouse_genomes_project 7 106093884 106095223 + Ctr9 protein_coding retained_intron MGP_CASTEiJ_T0086025.1 MGP_CASTEiJ_G0031889.1 mouse_genomes_project 7 106107688 106108201 + Ctr9 protein_coding retained_intron MGP_CASTEiJ_T0086026.1 MGP_CASTEiJ_G0031889.1 mouse_genomes_project 7 106107688 106109395 + Ctr9 protein_coding retained_intron MGP_CASTEiJ_T0086027.1 MGP_CASTEiJ_G0031889.1 mouse_genomes_project 7 106113611 106114994 + Ctr9 protein_coding processed_transcript MGP_CASTEiJ_T0087028.1 MGP_CASTEiJ_G0032087.1 mouse_genomes_project 7 123755130 123761512 - MGP_CASTEiJ_P0087028 Prss53 protein_coding protein_coding MGP_CASTEiJ_T0087029.1 MGP_CASTEiJ_G0032087.1 mouse_genomes_project 7 123755384 123761509 - MGP_CASTEiJ_P0087029 Prss53 protein_coding protein_coding MGP_CASTEiJ_T0083831.1 MGP_CASTEiJ_G0031228.1 mouse_genomes_project 7 37469542 37480592 - Scaf1 protein_coding retained_intron MGP_CASTEiJ_T0083832.1 MGP_CASTEiJ_G0031228.1 mouse_genomes_project 7 37469542 37482987 - MGP_CASTEiJ_P0083832 Scaf1 protein_coding protein_coding MGP_CASTEiJ_T0083833.1 MGP_CASTEiJ_G0031228.1 mouse_genomes_project 7 37469542 37481023 - MGP_CASTEiJ_P0083833 Scaf1 protein_coding protein_coding MGP_CASTEiJ_T0083834.1 MGP_CASTEiJ_G0031228.1 mouse_genomes_project 7 37476987 37482755 - Scaf1 protein_coding processed_transcript MGP_CASTEiJ_T0083835.1 MGP_CASTEiJ_G0031228.1 mouse_genomes_project 7 37478776 37480180 - Scaf1 protein_coding retained_intron MGP_CASTEiJ_T0083836.1 MGP_CASTEiJ_G0031228.1 mouse_genomes_project 7 37479870 37482481 - MGP_CASTEiJ_P0083836 Scaf1 protein_coding protein_coding MGP_CASTEiJ_T0083837.1 MGP_CASTEiJ_G0031228.1 mouse_genomes_project 7 37480822 37481560 - Scaf1 protein_coding processed_transcript MGP_CASTEiJ_T0005075.1 MGP_CASTEiJ_G0004328.1 mouse_genomes_project 7 38204532 38208096 - antisense antisense MGP_CASTEiJ_T0005076.1 MGP_CASTEiJ_G0004328.1 mouse_genomes_project 7 38205627 38208364 - antisense antisense MGP_CASTEiJ_T0010577.1 MGP_CASTEiJ_G0008765.1 mouse_genomes_project 7 54267274 54267334 - Mir344h-1 miRNA miRNA MGP_CASTEiJ_T0086135.1 MGP_CASTEiJ_G0031913.1 mouse_genomes_project 7 110741669 111321772 - MGP_CASTEiJ_P0086135 Sox6 protein_coding protein_coding MGP_CASTEiJ_T0086136.1 MGP_CASTEiJ_G0031913.1 mouse_genomes_project 7 110742141 111330317 - MGP_CASTEiJ_P0086136 Sox6 protein_coding protein_coding MGP_CASTEiJ_T0086137.1 MGP_CASTEiJ_G0031913.1 mouse_genomes_project 7 110742141 111321772 - MGP_CASTEiJ_P0086137 Sox6 protein_coding protein_coding MGP_CASTEiJ_T0086138.1 MGP_CASTEiJ_G0031913.1 mouse_genomes_project 7 110742141 111281399 - MGP_CASTEiJ_P0086138 Sox6 protein_coding protein_coding MGP_CASTEiJ_T0086139.1 MGP_CASTEiJ_G0031913.1 mouse_genomes_project 7 110745252 111100855 - MGP_CASTEiJ_P0086139 Sox6 protein_coding protein_coding MGP_CASTEiJ_T0086140.1 MGP_CASTEiJ_G0031913.1 mouse_genomes_project 7 110747459 111122811 - MGP_CASTEiJ_P0086140 Sox6 protein_coding protein_coding MGP_CASTEiJ_T0086141.1 MGP_CASTEiJ_G0031913.1 mouse_genomes_project 7 110747459 111122846 - MGP_CASTEiJ_P0086141 Sox6 protein_coding protein_coding MGP_CASTEiJ_T0086142.1 MGP_CASTEiJ_G0031913.1 mouse_genomes_project 7 110747472 111281399 - MGP_CASTEiJ_P0086142 Sox6 protein_coding protein_coding MGP_CASTEiJ_T0086143.1 MGP_CASTEiJ_G0031913.1 mouse_genomes_project 7 110789760 111325187 - Sox6 protein_coding retained_intron MGP_CASTEiJ_T0086144.1 MGP_CASTEiJ_G0031913.1 mouse_genomes_project 7 110790194 110871158 - Sox6 protein_coding processed_transcript MGP_CASTEiJ_T0086145.1 MGP_CASTEiJ_G0031913.1 mouse_genomes_project 7 110817809 111330369 - Sox6 protein_coding retained_intron MGP_CASTEiJ_T0086146.1 MGP_CASTEiJ_G0031913.1 mouse_genomes_project 7 110859875 110941720 - MGP_CASTEiJ_P0086146 Sox6 protein_coding protein_coding MGP_CASTEiJ_T0086147.1 MGP_CASTEiJ_G0031913.1 mouse_genomes_project 7 110870488 110941720 - Sox6 protein_coding retained_intron MGP_CASTEiJ_T0086148.1 MGP_CASTEiJ_G0031913.1 mouse_genomes_project 7 111059797 111137356 - MGP_CASTEiJ_P0086148 Sox6 protein_coding protein_coding MGP_CASTEiJ_T0086149.1 MGP_CASTEiJ_G0031913.1 mouse_genomes_project 7 111084300 111326098 - Sox6 protein_coding processed_transcript MGP_CASTEiJ_T0086150.1 MGP_CASTEiJ_G0031913.1 mouse_genomes_project 7 111120877 111122857 - Sox6 protein_coding retained_intron MGP_CASTEiJ_T0102455.1 MGP_CASTEiJ_G0039180.1 mouse_genomes_project 7 6793839 6794771 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0081680.1 MGP_CASTEiJ_G0030665.1 mouse_genomes_project 7 3233859 3261318 + MGP_CASTEiJ_P0081680 Zfp667 protein_coding protein_coding MGP_CASTEiJ_T0081681.1 MGP_CASTEiJ_G0030665.1 mouse_genomes_project 7 3233873 3248902 + Zfp667 protein_coding processed_transcript MGP_CASTEiJ_T0081682.1 MGP_CASTEiJ_G0030665.1 mouse_genomes_project 7 3233894 3261288 + MGP_CASTEiJ_P0081682 Zfp667 protein_coding protein_coding MGP_CASTEiJ_T0081683.1 MGP_CASTEiJ_G0030665.1 mouse_genomes_project 7 3235176 3261108 + MGP_CASTEiJ_P0081683 Zfp667 protein_coding protein_coding MGP_CASTEiJ_T0081684.1 MGP_CASTEiJ_G0030665.1 mouse_genomes_project 7 3237898 3241700 + Zfp667 protein_coding retained_intron MGP_CASTEiJ_T0084381.1 MGP_CASTEiJ_G0031371.1 mouse_genomes_project 7 56965738 56971908 + Mcee protein_coding processed_transcript MGP_CASTEiJ_T0084382.1 MGP_CASTEiJ_G0031371.1 mouse_genomes_project 7 56965776 56986707 + MGP_CASTEiJ_P0084382 Mcee protein_coding protein_coding MGP_CASTEiJ_T0084383.1 MGP_CASTEiJ_G0031371.1 mouse_genomes_project 7 56965856 56986703 + MGP_CASTEiJ_P0084383 Mcee protein_coding protein_coding MGP_CASTEiJ_T0084384.1 MGP_CASTEiJ_G0031371.1 mouse_genomes_project 7 56965891 56986703 + MGP_CASTEiJ_P0084384 Mcee protein_coding protein_coding MGP_CASTEiJ_T0087249.1 MGP_CASTEiJ_G0032129.1 mouse_genomes_project 7 127470867 127490732 - MGP_CASTEiJ_P0087249 2310057M21Rik protein_coding protein_coding MGP_CASTEiJ_T0008573.1 MGP_CASTEiJ_G0006938.1 mouse_genomes_project 7 887724 889454 + 1700095K22Rik lincRNA lincRNA MGP_CASTEiJ_T0087090.1 MGP_CASTEiJ_G0032101.1 mouse_genomes_project 7 124043764 124099469 + MGP_CASTEiJ_P0087090 Itgad protein_coding protein_coding MGP_CASTEiJ_T0087091.1 MGP_CASTEiJ_G0032101.1 mouse_genomes_project 7 124066267 124099472 + MGP_CASTEiJ_P0087091 Itgad protein_coding protein_coding MGP_CASTEiJ_T0087092.1 MGP_CASTEiJ_G0032101.1 mouse_genomes_project 7 124066276 124099469 + MGP_CASTEiJ_P0087092 Itgad protein_coding protein_coding MGP_CASTEiJ_T0087093.1 MGP_CASTEiJ_G0032101.1 mouse_genomes_project 7 124097579 124099472 + MGP_CASTEiJ_P0087093 Itgad protein_coding protein_coding MGP_CASTEiJ_T0087094.1 MGP_CASTEiJ_G0032101.1 mouse_genomes_project 7 124097841 124118904 + MGP_CASTEiJ_P0087094 Itgad protein_coding protein_coding MGP_CASTEiJ_T0082412.1 MGP_CASTEiJ_G0030897.1 mouse_genomes_project 7 17280565 17344614 - MGP_CASTEiJ_P0082412 Grik5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082413.1 MGP_CASTEiJ_G0030897.1 mouse_genomes_project 7 17280565 17344859 - MGP_CASTEiJ_P0082413 Grik5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082414.1 MGP_CASTEiJ_G0030897.1 mouse_genomes_project 7 17280565 17344805 - MGP_CASTEiJ_P0082414 Grik5 protein_coding protein_coding MGP_CASTEiJ_T0082415.1 MGP_CASTEiJ_G0030897.1 mouse_genomes_project 7 17319135 17332202 - Grik5 protein_coding retained_intron MGP_CASTEiJ_T0082416.1 MGP_CASTEiJ_G0030897.1 mouse_genomes_project 7 17332769 17337708 - Grik5 protein_coding retained_intron MGP_CASTEiJ_T0082417.1 MGP_CASTEiJ_G0030897.1 mouse_genomes_project 7 17332956 17333638 - Grik5 protein_coding retained_intron MGP_CASTEiJ_T0082418.1 MGP_CASTEiJ_G0030897.1 mouse_genomes_project 7 17341073 17344823 - Grik5 protein_coding processed_transcript MGP_CASTEiJ_T0081746.1 MGP_CASTEiJ_G0030705.1 mouse_genomes_project 7 7508066 7509023 - MGP_CASTEiJ_P0081746 Vmn1r84 protein_coding protein_coding MGP_CASTEiJ_T0002193.1 MGP_CASTEiJ_G0002112.1 mouse_genomes_project 7 69191321 69194207 + TEC TEC MGP_CASTEiJ_T0085368.1 MGP_CASTEiJ_G0031602.1 mouse_genomes_project 7 95274830 95288517 - MGP_CASTEiJ_P0085368 Plekhb1 protein_coding protein_coding MGP_CASTEiJ_T0085369.1 MGP_CASTEiJ_G0031602.1 mouse_genomes_project 7 95275832 95293933 - MGP_CASTEiJ_P0085369 Plekhb1 protein_coding protein_coding MGP_CASTEiJ_T0085370.1 MGP_CASTEiJ_G0031602.1 mouse_genomes_project 7 95275832 95293982 - MGP_CASTEiJ_P0085370 Plekhb1 protein_coding protein_coding MGP_CASTEiJ_T0085371.1 MGP_CASTEiJ_G0031602.1 mouse_genomes_project 7 95275832 95288544 - MGP_CASTEiJ_P0085371 Plekhb1 protein_coding protein_coding MGP_CASTEiJ_T0085372.1 MGP_CASTEiJ_G0031602.1 mouse_genomes_project 7 95275836 95290016 - MGP_CASTEiJ_P0085372 Plekhb1 protein_coding protein_coding MGP_CASTEiJ_T0085373.1 MGP_CASTEiJ_G0031602.1 mouse_genomes_project 7 95275836 95290016 - MGP_CASTEiJ_P0085373 Plekhb1 protein_coding protein_coding MGP_CASTEiJ_T0085374.1 MGP_CASTEiJ_G0031602.1 mouse_genomes_project 7 95276580 95289924 - MGP_CASTEiJ_P0085374 Plekhb1 protein_coding protein_coding MGP_CASTEiJ_T0085375.1 MGP_CASTEiJ_G0031602.1 mouse_genomes_project 7 95276741 95285357 - Plekhb1 protein_coding retained_intron MGP_CASTEiJ_T0085376.1 MGP_CASTEiJ_G0031602.1 mouse_genomes_project 7 95276883 95293857 - MGP_CASTEiJ_P0085376 Plekhb1 protein_coding protein_coding MGP_CASTEiJ_T0085377.1 MGP_CASTEiJ_G0031602.1 mouse_genomes_project 7 95277505 95288667 - MGP_CASTEiJ_P0085377 Plekhb1 protein_coding protein_coding MGP_CASTEiJ_T0085378.1 MGP_CASTEiJ_G0031602.1 mouse_genomes_project 7 95277573 95289982 - MGP_CASTEiJ_P0085378 Plekhb1 protein_coding protein_coding MGP_CASTEiJ_T0008814.1 MGP_CASTEiJ_G0007109.1 mouse_genomes_project 7 126797401 126799345 - Etos1 lincRNA lincRNA MGP_CASTEiJ_T0083929.1 MGP_CASTEiJ_G0031256.1 mouse_genomes_project 7 37942434 37960423 - MGP_CASTEiJ_P0083929 Ruvbl2 protein_coding protein_coding MGP_CASTEiJ_T0083930.1 MGP_CASTEiJ_G0031256.1 mouse_genomes_project 7 37942480 37955214 - MGP_CASTEiJ_P0083930 Ruvbl2 protein_coding protein_coding MGP_CASTEiJ_T0083931.1 MGP_CASTEiJ_G0031256.1 mouse_genomes_project 7 37945529 37955300 - MGP_CASTEiJ_P0083931 Ruvbl2 protein_coding protein_coding MGP_CASTEiJ_T0017629.1 MGP_CASTEiJ_G0014990.1 mouse_genomes_project 7 56424996 56430560 + processed_transcript lincRNA MGP_CASTEiJ_T0017630.1 MGP_CASTEiJ_G0014990.1 mouse_genomes_project 7 56428814 56430391 + processed_transcript antisense MGP_CASTEiJ_T0005180.1 MGP_CASTEiJ_G0004402.1 mouse_genomes_project 7 141532379 141575663 - Gm14372 antisense antisense MGP_CASTEiJ_T0082138.1 MGP_CASTEiJ_G0030819.1 mouse_genomes_project 7 14147381 14148949 + Ppp1r13l protein_coding processed_transcript MGP_CASTEiJ_T0082139.1 MGP_CASTEiJ_G0030819.1 mouse_genomes_project 7 14147402 14158534 + MGP_CASTEiJ_P0082139 Ppp1r13l protein_coding protein_coding MGP_CASTEiJ_T0082140.1 MGP_CASTEiJ_G0030819.1 mouse_genomes_project 7 14148278 14158530 + MGP_CASTEiJ_P0082140 Ppp1r13l protein_coding protein_coding MGP_CASTEiJ_T0082141.1 MGP_CASTEiJ_G0030819.1 mouse_genomes_project 7 14148848 14167128 + MGP_CASTEiJ_P0082141 Ppp1r13l protein_coding protein_coding MGP_CASTEiJ_T0082142.1 MGP_CASTEiJ_G0030819.1 mouse_genomes_project 7 14157094 14158508 + MGP_CASTEiJ_P0082142 Ppp1r13l protein_coding protein_coding MGP_CASTEiJ_T0082715.1 MGP_CASTEiJ_G0030972.1 mouse_genomes_project 7 20561102 20563923 - MGP_CASTEiJ_P0082715 protein_coding protein_coding MGP_CASTEiJ_T0083549.1 MGP_CASTEiJ_G0031153.1 mouse_genomes_project 7 35441565 35460251 - MGP_CASTEiJ_P0083549 Zfp715 protein_coding protein_coding MGP_CASTEiJ_T0083550.1 MGP_CASTEiJ_G0031153.1 mouse_genomes_project 7 35441891 35460267 - MGP_CASTEiJ_P0083550 Zfp715 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083551.1 MGP_CASTEiJ_G0031153.1 mouse_genomes_project 7 35441891 35458463 - MGP_CASTEiJ_P0083551 Zfp715 protein_coding protein_coding MGP_CASTEiJ_T0083552.1 MGP_CASTEiJ_G0031153.1 mouse_genomes_project 7 35441891 35460259 - MGP_CASTEiJ_P0083552 Zfp715 protein_coding protein_coding MGP_CASTEiJ_T0083553.1 MGP_CASTEiJ_G0031153.1 mouse_genomes_project 7 35445328 35460099 - MGP_CASTEiJ_P0083553 Zfp715 protein_coding protein_coding MGP_CASTEiJ_T0083554.1 MGP_CASTEiJ_G0031153.1 mouse_genomes_project 7 35446856 35460298 - Zfp715 protein_coding retained_intron MGP_CASTEiJ_T0083555.1 MGP_CASTEiJ_G0031153.1 mouse_genomes_project 7 35446990 35460058 - MGP_CASTEiJ_P0083555 Zfp715 protein_coding protein_coding MGP_CASTEiJ_T0087272.1 MGP_CASTEiJ_G0032135.1 mouse_genomes_project 7 127689664 127702747 + MGP_CASTEiJ_P0087272 Bub3 protein_coding protein_coding MGP_CASTEiJ_T0087273.1 MGP_CASTEiJ_G0032135.1 mouse_genomes_project 7 127689911 127698664 + MGP_CASTEiJ_P0087273 Bub3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0015232.1 MGP_CASTEiJ_G0013395.1 mouse_genomes_project 7 60438365 60439356 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084657.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72688431 72708355 - MGP_CASTEiJ_P0084657 Polg protein_coding protein_coding MGP_CASTEiJ_T0084658.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72691582 72693830 - MGP_CASTEiJ_P0084658 Polg protein_coding protein_coding MGP_CASTEiJ_T0084659.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72691583 72697265 - Polg protein_coding retained_intron MGP_CASTEiJ_T0084660.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72691583 72708180 - Polg protein_coding retained_intron MGP_CASTEiJ_T0084661.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72691583 72692819 - MGP_CASTEiJ_P0084661 Polg protein_coding protein_coding MGP_CASTEiJ_T0084662.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72691764 72708173 - MGP_CASTEiJ_P0084662 Polg protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084663.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72692367 72694276 - Polg protein_coding retained_intron MGP_CASTEiJ_T0084664.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72693782 72694118 - MGP_CASTEiJ_P0084664 Polg protein_coding protein_coding MGP_CASTEiJ_T0084665.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72693795 72695971 - MGP_CASTEiJ_P0084665 Polg protein_coding protein_coding MGP_CASTEiJ_T0084666.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72694125 72696525 - Polg protein_coding retained_intron MGP_CASTEiJ_T0084667.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72696130 72698250 - Polg protein_coding retained_intron MGP_CASTEiJ_T0084668.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72696715 72697579 - Polg protein_coding retained_intron MGP_CASTEiJ_T0084669.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72697670 72701670 - MGP_CASTEiJ_P0084669 Polg protein_coding protein_coding MGP_CASTEiJ_T0084670.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72698254 72702025 - MGP_CASTEiJ_P0084670 Polg protein_coding protein_coding MGP_CASTEiJ_T0084671.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72701750 72704015 - Polg protein_coding processed_transcript MGP_CASTEiJ_T0084672.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72705896 72708187 - Polg protein_coding retained_intron MGP_CASTEiJ_T0084673.1 MGP_CASTEiJ_G0031421.1 mouse_genomes_project 7 72706875 72708063 - MGP_CASTEiJ_P0084673 Polg protein_coding protein_coding MGP_CASTEiJ_T0082379.1 MGP_CASTEiJ_G0030892.1 mouse_genomes_project 7 17159929 17164756 + MGP_CASTEiJ_P0082379 Cd79a protein_coding protein_coding MGP_CASTEiJ_T0085848.1 MGP_CASTEiJ_G0031807.1 mouse_genomes_project 7 101842269 101844956 + MGP_CASTEiJ_P0085848 protein_coding protein_coding MGP_CASTEiJ_T0015245.1 MGP_CASTEiJ_G0013408.1 mouse_genomes_project 7 70464307 70464810 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085800.1 MGP_CASTEiJ_G0031786.1 mouse_genomes_project 7 100852218 100856789 - MGP_CASTEiJ_P0085800 Rrp8 protein_coding protein_coding MGP_CASTEiJ_T0085801.1 MGP_CASTEiJ_G0031786.1 mouse_genomes_project 7 100852415 100857384 - MGP_CASTEiJ_P0085801 Rrp8 protein_coding protein_coding MGP_CASTEiJ_T0085802.1 MGP_CASTEiJ_G0031786.1 mouse_genomes_project 7 100852648 100853690 - Rrp8 protein_coding retained_intron MGP_CASTEiJ_T0085803.1 MGP_CASTEiJ_G0031786.1 mouse_genomes_project 7 100853014 100853955 - Rrp8 protein_coding retained_intron MGP_CASTEiJ_T0085804.1 MGP_CASTEiJ_G0031786.1 mouse_genomes_project 7 100853014 100854072 - Rrp8 protein_coding processed_transcript MGP_CASTEiJ_T0085805.1 MGP_CASTEiJ_G0031786.1 mouse_genomes_project 7 100854700 100856381 - Rrp8 protein_coding processed_transcript MGP_CASTEiJ_T0087384.1 MGP_CASTEiJ_G0032158.1 mouse_genomes_project 7 131821355 131825583 + MGP_CASTEiJ_P0087384 Nps protein_coding protein_coding MGP_CASTEiJ_T0082328.1 MGP_CASTEiJ_G0030877.1 mouse_genomes_project 7 16704358 16712816 + MGP_CASTEiJ_P0082328 Zfp428 protein_coding protein_coding MGP_CASTEiJ_T0082329.1 MGP_CASTEiJ_G0030877.1 mouse_genomes_project 7 16704422 16713079 + MGP_CASTEiJ_P0082329 Zfp428 protein_coding protein_coding MGP_CASTEiJ_T0082330.1 MGP_CASTEiJ_G0030877.1 mouse_genomes_project 7 16704450 16712500 + MGP_CASTEiJ_P0082330 Zfp428 protein_coding protein_coding MGP_CASTEiJ_T0082331.1 MGP_CASTEiJ_G0030877.1 mouse_genomes_project 7 16704481 16713077 + MGP_CASTEiJ_P0082331 Zfp428 protein_coding protein_coding MGP_CASTEiJ_T0085325.1 MGP_CASTEiJ_G0031594.1 mouse_genomes_project 7 94918160 94964231 - MGP_CASTEiJ_P0085325 Ppme1 protein_coding protein_coding MGP_CASTEiJ_T0015256.1 MGP_CASTEiJ_G0013419.1 mouse_genomes_project 7 78418516 78418857 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005123.1 MGP_CASTEiJ_G0004361.1 mouse_genomes_project 7 94190282 94195804 + Gm15635 antisense antisense MGP_CASTEiJ_T0005124.1 MGP_CASTEiJ_G0004361.1 mouse_genomes_project 7 94193889 94195715 + Gm15635 antisense antisense MGP_CASTEiJ_T0005125.1 MGP_CASTEiJ_G0004361.1 mouse_genomes_project 7 94193941 94196177 + Gm15635 antisense antisense MGP_CASTEiJ_T0082223.1 MGP_CASTEiJ_G0030842.1 mouse_genomes_project 7 14639451 14650872 - Cblc protein_coding processed_transcript MGP_CASTEiJ_T0082224.1 MGP_CASTEiJ_G0030842.1 mouse_genomes_project 7 14640188 14646060 - Cblc protein_coding processed_transcript MGP_CASTEiJ_T0082225.1 MGP_CASTEiJ_G0030842.1 mouse_genomes_project 7 14640281 14659780 - MGP_CASTEiJ_P0082225 Cblc protein_coding protein_coding MGP_CASTEiJ_T0082226.1 MGP_CASTEiJ_G0030842.1 mouse_genomes_project 7 14640281 14659796 - MGP_CASTEiJ_P0082226 Cblc protein_coding protein_coding MGP_CASTEiJ_T0082227.1 MGP_CASTEiJ_G0030842.1 mouse_genomes_project 7 14647601 14655158 - Cblc protein_coding processed_transcript MGP_CASTEiJ_T0082228.1 MGP_CASTEiJ_G0030842.1 mouse_genomes_project 7 14653507 14656129 - Cblc protein_coding processed_transcript MGP_CASTEiJ_T0082229.1 MGP_CASTEiJ_G0030842.1 mouse_genomes_project 7 14654773 14659792 - Cblc protein_coding retained_intron MGP_CASTEiJ_T0086907.1 MGP_CASTEiJ_G0032067.1 mouse_genomes_project 7 123329672 123345507 + MGP_CASTEiJ_P0086907 protein_coding protein_coding MGP_CASTEiJ_T0086908.1 MGP_CASTEiJ_G0032067.1 mouse_genomes_project 7 123330488 123333693 + protein_coding processed_transcript MGP_CASTEiJ_T0086909.1 MGP_CASTEiJ_G0032067.1 mouse_genomes_project 7 123335692 123342447 + MGP_CASTEiJ_P0086909 protein_coding protein_coding MGP_CASTEiJ_T0086910.1 MGP_CASTEiJ_G0032067.1 mouse_genomes_project 7 123335879 123340477 + protein_coding retained_intron MGP_CASTEiJ_T0086911.1 MGP_CASTEiJ_G0032067.1 mouse_genomes_project 7 123336112 123340659 + MGP_CASTEiJ_P0086911 protein_coding protein_coding MGP_CASTEiJ_T0086912.1 MGP_CASTEiJ_G0032067.1 mouse_genomes_project 7 123336118 123341069 + MGP_CASTEiJ_P0086912 protein_coding protein_coding MGP_CASTEiJ_T0086913.1 MGP_CASTEiJ_G0032067.1 mouse_genomes_project 7 123337320 123342645 + protein_coding retained_intron MGP_CASTEiJ_T0086914.1 MGP_CASTEiJ_G0032067.1 mouse_genomes_project 7 123337534 123338425 + protein_coding retained_intron MGP_CASTEiJ_T0086593.1 MGP_CASTEiJ_G0032008.1 mouse_genomes_project 7 122242717 122246133 + MGP_CASTEiJ_P0086593 Tufm protein_coding protein_coding MGP_CASTEiJ_T0086595.1 MGP_CASTEiJ_G0032008.1 mouse_genomes_project 7 122242734 122246137 + MGP_CASTEiJ_P0086595 Tufm protein_coding protein_coding MGP_CASTEiJ_T0086596.1 MGP_CASTEiJ_G0032008.1 mouse_genomes_project 7 122242985 122244304 + Tufm protein_coding processed_transcript MGP_CASTEiJ_T0086597.1 MGP_CASTEiJ_G0032008.1 mouse_genomes_project 7 122243971 122244490 + Tufm protein_coding retained_intron MGP_CASTEiJ_T0086598.1 MGP_CASTEiJ_G0032008.1 mouse_genomes_project 7 122244727 122245598 + MGP_CASTEiJ_P0086598 Tufm protein_coding protein_coding MGP_CASTEiJ_T0082380.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17165470 17186769 + MGP_CASTEiJ_P0082380 Arhgef1 protein_coding protein_coding MGP_CASTEiJ_T0082381.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17165595 17186766 + MGP_CASTEiJ_P0082381 Arhgef1 protein_coding protein_coding MGP_CASTEiJ_T0082382.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17165595 17178874 + MGP_CASTEiJ_P0082382 Arhgef1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082383.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17165609 17186766 + MGP_CASTEiJ_P0082383 Arhgef1 protein_coding protein_coding MGP_CASTEiJ_T0082384.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17165614 17186771 + MGP_CASTEiJ_P0082384 Arhgef1 protein_coding protein_coding MGP_CASTEiJ_T0082385.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17165623 17166912 + Arhgef1 protein_coding processed_transcript MGP_CASTEiJ_T0082386.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17165629 17170404 + MGP_CASTEiJ_P0082386 Arhgef1 protein_coding protein_coding MGP_CASTEiJ_T0082387.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17165633 17172474 + Arhgef1 protein_coding retained_intron MGP_CASTEiJ_T0082388.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17166883 17176332 + MGP_CASTEiJ_P0082388 Arhgef1 protein_coding protein_coding MGP_CASTEiJ_T0082389.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17166885 17186766 + Arhgef1 protein_coding retained_intron MGP_CASTEiJ_T0082390.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17166932 17175482 + MGP_CASTEiJ_P0082390 Arhgef1 protein_coding protein_coding MGP_CASTEiJ_T0082391.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17166934 17186769 + MGP_CASTEiJ_P0082391 Arhgef1 protein_coding protein_coding MGP_CASTEiJ_T0082392.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17166967 17183281 + MGP_CASTEiJ_P0082392 Arhgef1 protein_coding protein_coding MGP_CASTEiJ_T0082393.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17170158 17175022 + MGP_CASTEiJ_P0082393 Arhgef1 protein_coding protein_coding MGP_CASTEiJ_T0082394.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17175498 17178769 + Arhgef1 protein_coding retained_intron MGP_CASTEiJ_T0082395.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17177276 17186283 + MGP_CASTEiJ_P0082395 Arhgef1 protein_coding protein_coding MGP_CASTEiJ_T0082396.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17179578 17182569 + Arhgef1 protein_coding retained_intron MGP_CASTEiJ_T0082397.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17183437 17185024 + Arhgef1 protein_coding retained_intron MGP_CASTEiJ_T0082398.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17183535 17185662 + Arhgef1 protein_coding retained_intron MGP_CASTEiJ_T0082399.1 MGP_CASTEiJ_G0030893.1 mouse_genomes_project 7 17183545 17186113 + Arhgef1 protein_coding processed_transcript MGP_CASTEiJ_T0082094.1 MGP_CASTEiJ_G0030807.1 mouse_genomes_project 7 13899940 13909728 - MGP_CASTEiJ_P0082094 Qpctl protein_coding protein_coding MGP_CASTEiJ_T0082095.1 MGP_CASTEiJ_G0030807.1 mouse_genomes_project 7 13903795 13907965 - Qpctl protein_coding retained_intron MGP_CASTEiJ_T0084078.1 MGP_CASTEiJ_G0031294.1 mouse_genomes_project 7 38720416 38800667 - MGP_CASTEiJ_P0084078 Abcc8 protein_coding protein_coding MGP_CASTEiJ_T0084079.1 MGP_CASTEiJ_G0031294.1 mouse_genomes_project 7 38720417 38800583 - MGP_CASTEiJ_P0084079 Abcc8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0005167.1 MGP_CASTEiJ_G0004392.1 mouse_genomes_project 7 128873159 128875645 - Gm15582 antisense antisense MGP_CASTEiJ_T0084601.1 MGP_CASTEiJ_G0031410.1 mouse_genomes_project 7 71964524 71972475 - MGP_CASTEiJ_P0084601 Mrpl46 protein_coding protein_coding MGP_CASTEiJ_T0084602.1 MGP_CASTEiJ_G0031410.1 mouse_genomes_project 7 71964888 71972931 - Mrpl46 protein_coding processed_transcript MGP_CASTEiJ_T0005488.1 MGP_CASTEiJ_G0004630.1 mouse_genomes_project 7 72509098 72510219 - Gm44558 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0005489.1 MGP_CASTEiJ_G0004630.1 mouse_genomes_project 7 72509102 72510443 - Gm44558 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0082743.1 MGP_CASTEiJ_G0030982.1 mouse_genomes_project 7 20834307 20836812 + MGP_CASTEiJ_P0082743 Rps16 protein_coding protein_coding MGP_CASTEiJ_T0082744.1 MGP_CASTEiJ_G0030982.1 mouse_genomes_project 7 20834418 20836812 + Rps16 protein_coding retained_intron MGP_CASTEiJ_T0082745.1 MGP_CASTEiJ_G0030982.1 mouse_genomes_project 7 20834459 20836814 + MGP_CASTEiJ_P0082745 Rps16 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082746.1 MGP_CASTEiJ_G0030982.1 mouse_genomes_project 7 20834580 20836812 + Rps16 protein_coding processed_transcript MGP_CASTEiJ_T0081862.1 MGP_CASTEiJ_G0030740.1 mouse_genomes_project 7 9533817 9535482 - MGP_CASTEiJ_P0081862 Vmn1r90 protein_coding protein_coding MGP_CASTEiJ_T0087803.1 MGP_CASTEiJ_G0032270.1 mouse_genomes_project 7 138881402 138908933 - MGP_CASTEiJ_P0087803 Tollip protein_coding protein_coding MGP_CASTEiJ_T0087804.1 MGP_CASTEiJ_G0032270.1 mouse_genomes_project 7 138890538 138908891 - MGP_CASTEiJ_P0087804 Tollip protein_coding protein_coding MGP_CASTEiJ_T0087805.1 MGP_CASTEiJ_G0032270.1 mouse_genomes_project 7 138898557 138908941 - MGP_CASTEiJ_P0087805 Tollip protein_coding protein_coding MGP_CASTEiJ_T0015233.1 MGP_CASTEiJ_G0013396.1 mouse_genomes_project 7 61980348 61981350 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081569.1 MGP_CASTEiJ_G0030623.1 mouse_genomes_project 7 1621836 1641265 - MGP_CASTEiJ_P0081569 Tmem150b protein_coding protein_coding MGP_CASTEiJ_T0081571.1 MGP_CASTEiJ_G0030623.1 mouse_genomes_project 7 1630704 1641098 - MGP_CASTEiJ_P0081571 Tmem150b protein_coding protein_coding MGP_CASTEiJ_T0101236.1 MGP_CASTEiJ_G0038149.1 mouse_genomes_project 7 37610436 37610519 - Snord32a snoRNA snoRNA MGP_CASTEiJ_T0010556.1 MGP_CASTEiJ_G0008744.1 mouse_genomes_project 7 35630040 35630113 + Mir7051 miRNA miRNA MGP_CASTEiJ_T0015281.1 MGP_CASTEiJ_G0013444.1 mouse_genomes_project 7 95819119 95819634 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084167.1 MGP_CASTEiJ_G0031321.1 mouse_genomes_project 7 41242159 41243282 + MGP_CASTEiJ_P0084167 Mrgprb8 protein_coding protein_coding MGP_CASTEiJ_T0101829.1 MGP_CASTEiJ_G0038586.1 mouse_genomes_project 7 33419067 33419527 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0081870.1 MGP_CASTEiJ_G0030744.1 mouse_genomes_project 7 10572306 10588128 + MGP_CASTEiJ_P0081870 protein_coding protein_coding MGP_CASTEiJ_T0081871.1 MGP_CASTEiJ_G0030744.1 mouse_genomes_project 7 10572342 10587546 + MGP_CASTEiJ_P0081871 protein_coding protein_coding MGP_CASTEiJ_T0081872.1 MGP_CASTEiJ_G0030744.1 mouse_genomes_project 7 10586413 10597074 + MGP_CASTEiJ_P0081872 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081873.1 MGP_CASTEiJ_G0030744.1 mouse_genomes_project 7 10590522 10597172 + MGP_CASTEiJ_P0081873 protein_coding protein_coding MGP_CASTEiJ_T0015263.1 MGP_CASTEiJ_G0013426.1 mouse_genomes_project 7 84226928 84227420 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008594.1 MGP_CASTEiJ_G0006955.1 mouse_genomes_project 7 21637834 21647485 + Gm26604 lincRNA lincRNA MGP_CASTEiJ_T0015165.1 MGP_CASTEiJ_G0013328.1 mouse_genomes_project 7 18193453 18193805 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102599.1 MGP_CASTEiJ_G0039323.1 mouse_genomes_project 7 100958814 101444399 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008589.1 MGP_CASTEiJ_G0006951.1 mouse_genomes_project 7 17426015 17430174 + D930028M14Rik lincRNA lincRNA MGP_CASTEiJ_T0008590.1 MGP_CASTEiJ_G0006951.1 mouse_genomes_project 7 17428615 17429766 + D930028M14Rik lincRNA lincRNA MGP_CASTEiJ_T0015133.1 MGP_CASTEiJ_G0013296.1 mouse_genomes_project 7 8995266 8995444 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085905.1 MGP_CASTEiJ_G0031857.1 mouse_genomes_project 7 103778790 103779817 - MGP_CASTEiJ_P0085905 Olfr516 protein_coding protein_coding MGP_CASTEiJ_T0085505.1 MGP_CASTEiJ_G0031623.1 mouse_genomes_project 7 96748324 96751399 - MGP_CASTEiJ_P0085505 Il18bp protein_coding protein_coding MGP_CASTEiJ_T0086312.1 MGP_CASTEiJ_G0031948.1 mouse_genomes_project 7 115429396 115606818 - MGP_CASTEiJ_P0086312 Dnah3 protein_coding protein_coding MGP_CASTEiJ_T0086313.1 MGP_CASTEiJ_G0031948.1 mouse_genomes_project 7 115429396 115606818 - MGP_CASTEiJ_P0086313 Dnah3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0010594.1 MGP_CASTEiJ_G0008782.1 mouse_genomes_project 7 72082372 72082469 + Mir7-2 miRNA miRNA MGP_CASTEiJ_T0083829.1 MGP_CASTEiJ_G0031227.1 mouse_genomes_project 7 37463624 37469447 + MGP_CASTEiJ_P0083829 Irf3 protein_coding protein_coding MGP_CASTEiJ_T0083830.1 MGP_CASTEiJ_G0031227.1 mouse_genomes_project 7 37463925 37468989 + MGP_CASTEiJ_P0083830 Irf3 protein_coding protein_coding MGP_CASTEiJ_T0082615.1 MGP_CASTEiJ_G0030946.1 mouse_genomes_project 7 19625736 19634102 + Numbl protein_coding processed_transcript MGP_CASTEiJ_T0082616.1 MGP_CASTEiJ_G0030946.1 mouse_genomes_project 7 19626028 19649311 + MGP_CASTEiJ_P0082616 Numbl protein_coding protein_coding MGP_CASTEiJ_T0082617.1 MGP_CASTEiJ_G0030946.1 mouse_genomes_project 7 19626086 19632203 + Numbl protein_coding processed_transcript MGP_CASTEiJ_T0082618.1 MGP_CASTEiJ_G0030946.1 mouse_genomes_project 7 19626109 19649314 + Numbl protein_coding retained_intron MGP_CASTEiJ_T0082619.1 MGP_CASTEiJ_G0030946.1 mouse_genomes_project 7 19628677 19649151 + Numbl protein_coding retained_intron MGP_CASTEiJ_T0102491.1 MGP_CASTEiJ_G0039216.1 mouse_genomes_project 7 11963940 11964927 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015287.1 MGP_CASTEiJ_G0013450.1 mouse_genomes_project 7 98667797 98668059 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085676.1 MGP_CASTEiJ_G0031735.1 mouse_genomes_project 7 99199714 99218994 + MGP_CASTEiJ_P0085676 Trim34b protein_coding protein_coding MGP_CASTEiJ_T0085677.1 MGP_CASTEiJ_G0031735.1 mouse_genomes_project 7 99199716 99218994 + MGP_CASTEiJ_P0085677 Trim34b protein_coding protein_coding MGP_CASTEiJ_T0085679.1 MGP_CASTEiJ_G0031735.1 mouse_genomes_project 7 99199812 99275214 + MGP_CASTEiJ_P0085679 Trim34b protein_coding protein_coding MGP_CASTEiJ_T0085680.1 MGP_CASTEiJ_G0031735.1 mouse_genomes_project 7 99199821 99271635 + MGP_CASTEiJ_P0085680 Trim34b protein_coding protein_coding MGP_CASTEiJ_T0082315.1 MGP_CASTEiJ_G0030874.1 mouse_genomes_project 7 16605749 16623863 - MGP_CASTEiJ_P0082315 Irgc1 protein_coding protein_coding MGP_CASTEiJ_T0082316.1 MGP_CASTEiJ_G0030874.1 mouse_genomes_project 7 16605749 16609358 - MGP_CASTEiJ_P0082316 Irgc1 protein_coding protein_coding MGP_CASTEiJ_T0082317.1 MGP_CASTEiJ_G0030874.1 mouse_genomes_project 7 16606972 16632970 - MGP_CASTEiJ_P0082317 Irgc1 protein_coding protein_coding MGP_CASTEiJ_T0082318.1 MGP_CASTEiJ_G0030874.1 mouse_genomes_project 7 16629840 16633096 - Irgc1 protein_coding processed_transcript MGP_CASTEiJ_T0082319.1 MGP_CASTEiJ_G0030874.1 mouse_genomes_project 7 16630245 16633086 - Irgc1 protein_coding processed_transcript MGP_CASTEiJ_T0084114.1 MGP_CASTEiJ_G0031302.1 mouse_genomes_project 7 39362073 39365729 - MGP_CASTEiJ_P0084114 Saa3 protein_coding protein_coding MGP_CASTEiJ_T0002224.1 MGP_CASTEiJ_G0002143.1 mouse_genomes_project 7 117954921 117961920 + TEC TEC MGP_CASTEiJ_T0015125.1 MGP_CASTEiJ_G0013288.1 mouse_genomes_project 7 6075470 6076181 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085860.1 MGP_CASTEiJ_G0031819.1 mouse_genomes_project 7 102066558 102067662 + MGP_CASTEiJ_P0085860 Olfr716 protein_coding protein_coding MGP_CASTEiJ_T0081646.1 MGP_CASTEiJ_G0030651.1 mouse_genomes_project 7 2034901 2055625 + MGP_CASTEiJ_P0081646 Epn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0081647.1 MGP_CASTEiJ_G0030651.1 mouse_genomes_project 7 2034997 2055617 + MGP_CASTEiJ_P0081647 Epn1 protein_coding protein_coding MGP_CASTEiJ_T0081648.1 MGP_CASTEiJ_G0030651.1 mouse_genomes_project 7 2035002 2046205 + MGP_CASTEiJ_P0081648 Epn1 protein_coding protein_coding MGP_CASTEiJ_T0081649.1 MGP_CASTEiJ_G0030651.1 mouse_genomes_project 7 2035030 2040171 + MGP_CASTEiJ_P0081649 Epn1 protein_coding protein_coding MGP_CASTEiJ_T0081650.1 MGP_CASTEiJ_G0030651.1 mouse_genomes_project 7 2035055 2055615 + MGP_CASTEiJ_P0081650 Epn1 protein_coding protein_coding MGP_CASTEiJ_T0081651.1 MGP_CASTEiJ_G0030651.1 mouse_genomes_project 7 2039919 2051468 + Epn1 protein_coding processed_transcript MGP_CASTEiJ_T0081652.1 MGP_CASTEiJ_G0030651.1 mouse_genomes_project 7 2046081 2049214 + Epn1 protein_coding retained_intron MGP_CASTEiJ_T0015255.1 MGP_CASTEiJ_G0013418.1 mouse_genomes_project 7 78110865 78112110 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085843.1 MGP_CASTEiJ_G0031802.1 mouse_genomes_project 7 101745760 101748920 - MGP_CASTEiJ_P0085843 Olfr702 protein_coding protein_coding MGP_CASTEiJ_T0102553.1 MGP_CASTEiJ_G0039277.1 mouse_genomes_project 7 78690154 78690465 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010574.1 MGP_CASTEiJ_G0008762.1 mouse_genomes_project 7 54255730 54257164 - miRNA miRNA MGP_CASTEiJ_T0002181.1 MGP_CASTEiJ_G0002101.1 mouse_genomes_project 7 66492964 66494201 - TEC TEC MGP_CASTEiJ_T0002126.1 MGP_CASTEiJ_G0002046.1 mouse_genomes_project 7 11670083 11671780 - TEC TEC MGP_CASTEiJ_T0087236.1 MGP_CASTEiJ_G0032123.1 mouse_genomes_project 7 126981490 127027412 + Htra1 protein_coding retained_intron MGP_CASTEiJ_T0087237.1 MGP_CASTEiJ_G0032123.1 mouse_genomes_project 7 126981582 127033160 + MGP_CASTEiJ_P0087237 Htra1 protein_coding protein_coding MGP_CASTEiJ_T0087238.1 MGP_CASTEiJ_G0032123.1 mouse_genomes_project 7 126989759 127033160 + Htra1 protein_coding processed_transcript MGP_CASTEiJ_T0087239.1 MGP_CASTEiJ_G0032123.1 mouse_genomes_project 7 127029168 127029944 + Htra1 protein_coding retained_intron MGP_CASTEiJ_T0087240.1 MGP_CASTEiJ_G0032123.1 mouse_genomes_project 7 127030230 127032896 + Htra1 protein_coding processed_transcript MGP_CASTEiJ_T0085235.1 MGP_CASTEiJ_G0031568.1 mouse_genomes_project 7 93053831 93125145 - MGP_CASTEiJ_P0085235 Emsy protein_coding protein_coding MGP_CASTEiJ_T0085236.1 MGP_CASTEiJ_G0031568.1 mouse_genomes_project 7 93055617 93124912 - MGP_CASTEiJ_P0085236 Emsy protein_coding protein_coding MGP_CASTEiJ_T0085237.1 MGP_CASTEiJ_G0031568.1 mouse_genomes_project 7 93057280 93124917 - MGP_CASTEiJ_P0085237 Emsy protein_coding protein_coding MGP_CASTEiJ_T0085238.1 MGP_CASTEiJ_G0031568.1 mouse_genomes_project 7 93057938 93060904 - Emsy protein_coding retained_intron MGP_CASTEiJ_T0085239.1 MGP_CASTEiJ_G0031568.1 mouse_genomes_project 7 93060167 93061681 - Emsy protein_coding processed_transcript MGP_CASTEiJ_T0085240.1 MGP_CASTEiJ_G0031568.1 mouse_genomes_project 7 93061789 93081258 - MGP_CASTEiJ_P0085240 Emsy protein_coding protein_coding MGP_CASTEiJ_T0085241.1 MGP_CASTEiJ_G0031568.1 mouse_genomes_project 7 93063158 93068951 - Emsy protein_coding retained_intron MGP_CASTEiJ_T0085242.1 MGP_CASTEiJ_G0031568.1 mouse_genomes_project 7 93063710 93083791 - MGP_CASTEiJ_P0085242 Emsy protein_coding protein_coding MGP_CASTEiJ_T0085243.1 MGP_CASTEiJ_G0031568.1 mouse_genomes_project 7 93067107 93069411 - Emsy protein_coding retained_intron MGP_CASTEiJ_T0085244.1 MGP_CASTEiJ_G0031568.1 mouse_genomes_project 7 93069219 93124961 - MGP_CASTEiJ_P0085244 Emsy protein_coding protein_coding MGP_CASTEiJ_T0085245.1 MGP_CASTEiJ_G0031568.1 mouse_genomes_project 7 93098171 93124930 - MGP_CASTEiJ_P0085245 Emsy protein_coding protein_coding MGP_CASTEiJ_T0085246.1 MGP_CASTEiJ_G0031568.1 mouse_genomes_project 7 93105160 93113071 - MGP_CASTEiJ_P0085246 Emsy protein_coding protein_coding MGP_CASTEiJ_T0085247.1 MGP_CASTEiJ_G0031568.1 mouse_genomes_project 7 93110929 93125149 - Emsy protein_coding retained_intron MGP_CASTEiJ_T0084225.1 MGP_CASTEiJ_G0031339.1 mouse_genomes_project 7 44736246 44738690 - MGP_CASTEiJ_P0084225 Fancf protein_coding protein_coding MGP_CASTEiJ_T0082939.1 MGP_CASTEiJ_G0031024.1 mouse_genomes_project 7 22375252 22391133 + MGP_CASTEiJ_P0082939 Zfp30 protein_coding protein_coding MGP_CASTEiJ_T0082940.1 MGP_CASTEiJ_G0031024.1 mouse_genomes_project 7 22375280 22387661 + MGP_CASTEiJ_P0082940 Zfp30 protein_coding protein_coding MGP_CASTEiJ_T0082941.1 MGP_CASTEiJ_G0031024.1 mouse_genomes_project 7 22375305 22384872 + Zfp30 protein_coding retained_intron MGP_CASTEiJ_T0015312.1 MGP_CASTEiJ_G0013475.1 mouse_genomes_project 7 122517224 122517453 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008653.1 MGP_CASTEiJ_G0007003.1 mouse_genomes_project 7 57748630 57749186 - Gm45214 lincRNA lincRNA MGP_CASTEiJ_T0008654.1 MGP_CASTEiJ_G0007003.1 mouse_genomes_project 7 57748633 57749246 - Gm45214 lincRNA lincRNA MGP_CASTEiJ_T0081898.1 MGP_CASTEiJ_G0030752.1 mouse_genomes_project 7 10838218 10870392 + MGP_CASTEiJ_P0081898 Slc8a2 protein_coding protein_coding MGP_CASTEiJ_T0101276.1 MGP_CASTEiJ_G0038189.1 mouse_genomes_project 7 116598949 116599086 - Gm27991 snoRNA snoRNA MGP_CASTEiJ_T0005131.1 MGP_CASTEiJ_G0004366.1 mouse_genomes_project 7 107665104 107673872 - Parvaos antisense antisense MGP_CASTEiJ_T0002235.1 MGP_CASTEiJ_G0002154.1 mouse_genomes_project 7 122728340 122730121 + TEC TEC MGP_CASTEiJ_T0085852.1 MGP_CASTEiJ_G0031811.1 mouse_genomes_project 7 101877851 101878802 - MGP_CASTEiJ_P0085852 Olfr6 protein_coding protein_coding MGP_CASTEiJ_T0082245.1 MGP_CASTEiJ_G0030849.1 mouse_genomes_project 7 14835318 14836049 + MGP_CASTEiJ_P0082245 protein_coding protein_coding MGP_CASTEiJ_T0085602.1 MGP_CASTEiJ_G0031669.1 mouse_genomes_project 7 97832908 97833820 + MGP_CASTEiJ_P0085602 protein_coding protein_coding MGP_CASTEiJ_T0081704.1 MGP_CASTEiJ_G0030677.1 mouse_genomes_project 7 3539143 3540070 + MGP_CASTEiJ_P0081704 Olfr1350 protein_coding protein_coding MGP_CASTEiJ_T0082102.1 MGP_CASTEiJ_G0030810.1 mouse_genomes_project 7 13938229 13977867 + MGP_CASTEiJ_P0082102 Eml2 protein_coding protein_coding MGP_CASTEiJ_T0082103.1 MGP_CASTEiJ_G0030810.1 mouse_genomes_project 7 13943908 13978092 + MGP_CASTEiJ_P0082103 Eml2 protein_coding protein_coding MGP_CASTEiJ_T0082104.1 MGP_CASTEiJ_G0030810.1 mouse_genomes_project 7 13943919 13978088 + MGP_CASTEiJ_P0082104 Eml2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082105.1 MGP_CASTEiJ_G0030810.1 mouse_genomes_project 7 13943942 13978089 + MGP_CASTEiJ_P0082105 Eml2 protein_coding protein_coding MGP_CASTEiJ_T0082106.1 MGP_CASTEiJ_G0030810.1 mouse_genomes_project 7 13943954 13947795 + MGP_CASTEiJ_P0082106 Eml2 protein_coding protein_coding MGP_CASTEiJ_T0082107.1 MGP_CASTEiJ_G0030810.1 mouse_genomes_project 7 13943975 13949235 + MGP_CASTEiJ_P0082107 Eml2 protein_coding protein_coding MGP_CASTEiJ_T0082108.1 MGP_CASTEiJ_G0030810.1 mouse_genomes_project 7 13944070 13947798 + Eml2 protein_coding processed_transcript MGP_CASTEiJ_T0082109.1 MGP_CASTEiJ_G0030810.1 mouse_genomes_project 7 13944344 13949248 + Eml2 protein_coding retained_intron MGP_CASTEiJ_T0087285.1 MGP_CASTEiJ_G0032141.1 mouse_genomes_project 7 128824697 128845393 + Lhpp protein_coding processed_transcript MGP_CASTEiJ_T0087286.1 MGP_CASTEiJ_G0032141.1 mouse_genomes_project 7 128824698 128938160 + MGP_CASTEiJ_P0087286 Lhpp protein_coding protein_coding MGP_CASTEiJ_T0087287.1 MGP_CASTEiJ_G0032141.1 mouse_genomes_project 7 128824726 128888804 + Lhpp protein_coding processed_transcript MGP_CASTEiJ_T0087288.1 MGP_CASTEiJ_G0032141.1 mouse_genomes_project 7 128824767 128937518 + Lhpp protein_coding processed_transcript MGP_CASTEiJ_T0087289.1 MGP_CASTEiJ_G0032141.1 mouse_genomes_project 7 128845137 128857489 + Lhpp protein_coding retained_intron MGP_CASTEiJ_T0084962.1 MGP_CASTEiJ_G0031483.1 mouse_genomes_project 7 77314950 77334712 - MGP_CASTEiJ_P0084962 Cfap161 protein_coding protein_coding MGP_CASTEiJ_T0084963.1 MGP_CASTEiJ_G0031483.1 mouse_genomes_project 7 77315303 77334675 - MGP_CASTEiJ_P0084963 Cfap161 protein_coding protein_coding MGP_CASTEiJ_T0084964.1 MGP_CASTEiJ_G0031483.1 mouse_genomes_project 7 77322944 77332589 - MGP_CASTEiJ_P0084964 Cfap161 protein_coding protein_coding MGP_CASTEiJ_T0086319.1 MGP_CASTEiJ_G0031952.1 mouse_genomes_project 7 115708509 115724717 - MGP_CASTEiJ_P0086319 Crym protein_coding protein_coding MGP_CASTEiJ_T0086320.1 MGP_CASTEiJ_G0031952.1 mouse_genomes_project 7 115719727 115724717 - Crym protein_coding retained_intron MGP_CASTEiJ_T0082199.1 MGP_CASTEiJ_G0030837.1 mouse_genomes_project 7 14521574 14524697 - MGP_CASTEiJ_P0082199 Apoc1 protein_coding protein_coding MGP_CASTEiJ_T0082200.1 MGP_CASTEiJ_G0030837.1 mouse_genomes_project 7 14521574 14524759 - MGP_CASTEiJ_P0082200 Apoc1 protein_coding protein_coding MGP_CASTEiJ_T0084861.1 MGP_CASTEiJ_G0031455.1 mouse_genomes_project 7 74375831 74432491 + MGP_CASTEiJ_P0084861 Zfp592 protein_coding protein_coding MGP_CASTEiJ_T0084862.1 MGP_CASTEiJ_G0031455.1 mouse_genomes_project 7 74409885 74411059 + Zfp592 protein_coding processed_transcript MGP_CASTEiJ_T0084863.1 MGP_CASTEiJ_G0031455.1 mouse_genomes_project 7 74425125 74425687 + Zfp592 protein_coding retained_intron MGP_CASTEiJ_T0084864.1 MGP_CASTEiJ_G0031455.1 mouse_genomes_project 7 74425401 74428782 + Zfp592 protein_coding retained_intron MGP_CASTEiJ_T0085892.1 MGP_CASTEiJ_G0031844.1 mouse_genomes_project 7 103294836 103295783 + MGP_CASTEiJ_P0085892 protein_coding protein_coding MGP_CASTEiJ_T0083316.1 MGP_CASTEiJ_G0031107.1 mouse_genomes_project 7 25192380 25194337 - MGP_CASTEiJ_P0083316 Scgb2b27 protein_coding protein_coding MGP_CASTEiJ_T0083317.1 MGP_CASTEiJ_G0031107.1 mouse_genomes_project 7 25192391 25194403 - Scgb2b27 protein_coding retained_intron MGP_CASTEiJ_T0083318.1 MGP_CASTEiJ_G0031107.1 mouse_genomes_project 7 25192429 25194328 - MGP_CASTEiJ_P0083318 Scgb2b27 protein_coding protein_coding MGP_CASTEiJ_T0083660.1 MGP_CASTEiJ_G0031192.1 mouse_genomes_project 7 36700733 36704954 - MGP_CASTEiJ_P0083660 Clec11a protein_coding protein_coding MGP_CASTEiJ_T0102479.1 MGP_CASTEiJ_G0039204.1 mouse_genomes_project 7 9598178 9598546 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010615.1 MGP_CASTEiJ_G0008803.1 mouse_genomes_project 7 123570737 123570813 + Mir762 miRNA miRNA MGP_CASTEiJ_T0087604.1 MGP_CASTEiJ_G0032234.1 mouse_genomes_project 7 137979647 137980000 + MGP_CASTEiJ_P0087604 Gm17387 protein_coding protein_coding MGP_CASTEiJ_T0082979.1 MGP_CASTEiJ_G0031037.1 mouse_genomes_project 7 22700181 22711807 + Zfp260 protein_coding processed_transcript MGP_CASTEiJ_T0082980.1 MGP_CASTEiJ_G0031037.1 mouse_genomes_project 7 22700198 22715137 + MGP_CASTEiJ_P0082980 Zfp260 protein_coding protein_coding MGP_CASTEiJ_T0082981.1 MGP_CASTEiJ_G0031037.1 mouse_genomes_project 7 22700565 22707626 + Zfp260 protein_coding retained_intron MGP_CASTEiJ_T0082982.1 MGP_CASTEiJ_G0031037.1 mouse_genomes_project 7 22700572 22712275 + MGP_CASTEiJ_P0082982 Zfp260 protein_coding protein_coding MGP_CASTEiJ_T0082983.1 MGP_CASTEiJ_G0031037.1 mouse_genomes_project 7 22700581 22715134 + Zfp260 protein_coding processed_transcript MGP_CASTEiJ_T0082984.1 MGP_CASTEiJ_G0031037.1 mouse_genomes_project 7 22700588 22715129 + MGP_CASTEiJ_P0082984 Zfp260 protein_coding protein_coding MGP_CASTEiJ_T0082985.1 MGP_CASTEiJ_G0031037.1 mouse_genomes_project 7 22703427 22707600 + Zfp260 protein_coding retained_intron MGP_CASTEiJ_T0102489.1 MGP_CASTEiJ_G0039214.1 mouse_genomes_project 7 10491648 10497470 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0084481.1 MGP_CASTEiJ_G0031390.1 mouse_genomes_project 7 59870340 60015577 - MGP_CASTEiJ_P0084481 Mef2a protein_coding protein_coding MGP_CASTEiJ_T0084482.1 MGP_CASTEiJ_G0031390.1 mouse_genomes_project 7 59871095 60015577 - MGP_CASTEiJ_P0084482 Mef2a protein_coding protein_coding MGP_CASTEiJ_T0084483.1 MGP_CASTEiJ_G0031390.1 mouse_genomes_project 7 59871261 59945819 - MGP_CASTEiJ_P0084483 Mef2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084484.1 MGP_CASTEiJ_G0031390.1 mouse_genomes_project 7 59873216 60015577 - MGP_CASTEiJ_P0084484 Mef2a protein_coding protein_coding MGP_CASTEiJ_T0084485.1 MGP_CASTEiJ_G0031390.1 mouse_genomes_project 7 59873354 60015577 - MGP_CASTEiJ_P0084485 Mef2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084486.1 MGP_CASTEiJ_G0031390.1 mouse_genomes_project 7 59873414 60015577 - MGP_CASTEiJ_P0084486 Mef2a protein_coding protein_coding MGP_CASTEiJ_T0084487.1 MGP_CASTEiJ_G0031390.1 mouse_genomes_project 7 59890928 60015577 - MGP_CASTEiJ_P0084487 Mef2a protein_coding protein_coding MGP_CASTEiJ_T0084488.1 MGP_CASTEiJ_G0031390.1 mouse_genomes_project 7 59987212 60015546 - Mef2a protein_coding processed_transcript MGP_CASTEiJ_T0086295.1 MGP_CASTEiJ_G0031945.1 mouse_genomes_project 7 115290308 115349859 + MGP_CASTEiJ_P0086295 2610020H08Rik protein_coding protein_coding MGP_CASTEiJ_T0086296.1 MGP_CASTEiJ_G0031945.1 mouse_genomes_project 7 115290312 115349859 + MGP_CASTEiJ_P0086296 2610020H08Rik protein_coding protein_coding MGP_CASTEiJ_T0086297.1 MGP_CASTEiJ_G0031945.1 mouse_genomes_project 7 115290432 115349854 + MGP_CASTEiJ_P0086297 2610020H08Rik protein_coding protein_coding MGP_CASTEiJ_T0086298.1 MGP_CASTEiJ_G0031945.1 mouse_genomes_project 7 115290453 115320326 + 2610020H08Rik protein_coding retained_intron MGP_CASTEiJ_T0086299.1 MGP_CASTEiJ_G0031945.1 mouse_genomes_project 7 115323605 115332282 + 2610020H08Rik protein_coding processed_transcript MGP_CASTEiJ_T0086300.1 MGP_CASTEiJ_G0031945.1 mouse_genomes_project 7 115325078 115327525 + 2610020H08Rik protein_coding retained_intron MGP_CASTEiJ_T0086301.1 MGP_CASTEiJ_G0031945.1 mouse_genomes_project 7 115334425 115344933 + 2610020H08Rik protein_coding processed_transcript MGP_CASTEiJ_T0086302.1 MGP_CASTEiJ_G0031945.1 mouse_genomes_project 7 115345099 115346324 + 2610020H08Rik protein_coding retained_intron MGP_CASTEiJ_T0082047.1 MGP_CASTEiJ_G0030794.1 mouse_genomes_project 7 13674428 13719134 + MGP_CASTEiJ_P0082047 protein_coding protein_coding MGP_CASTEiJ_T0008784.1 MGP_CASTEiJ_G0007089.1 mouse_genomes_project 7 121970957 121994305 - Gm44875 lincRNA lincRNA MGP_CASTEiJ_T0101249.1 MGP_CASTEiJ_G0038162.1 mouse_genomes_project 7 55192969 55193097 + Gm22494 snoRNA snoRNA MGP_CASTEiJ_T0086279.1 MGP_CASTEiJ_G0031941.1 mouse_genomes_project 7 115181051 115212888 + MGP_CASTEiJ_P0086279 Acsm4 protein_coding protein_coding MGP_CASTEiJ_T0085682.1 MGP_CASTEiJ_G0031737.1 mouse_genomes_project 7 99254662 99302186 - protein_coding retained_intron MGP_CASTEiJ_T0085684.1 MGP_CASTEiJ_G0031737.1 mouse_genomes_project 7 99298122 99315399 - protein_coding retained_intron MGP_CASTEiJ_T0085685.1 MGP_CASTEiJ_G0031737.1 mouse_genomes_project 7 99299590 99311704 - MGP_CASTEiJ_P0085685 protein_coding protein_coding MGP_CASTEiJ_T0085686.1 MGP_CASTEiJ_G0031737.1 mouse_genomes_project 7 99306942 99315297 - MGP_CASTEiJ_P0085686 protein_coding protein_coding MGP_CASTEiJ_T0008641.1 MGP_CASTEiJ_G0006993.1 mouse_genomes_project 7 36625119 36632153 + Gm36864 lincRNA lincRNA MGP_CASTEiJ_T0010605.1 MGP_CASTEiJ_G0008793.1 mouse_genomes_project 7 105864200 105864307 + miRNA miRNA MGP_CASTEiJ_T0010619.1 MGP_CASTEiJ_G0008807.1 mouse_genomes_project 7 132139985 132140107 + Mir1962 miRNA miRNA MGP_CASTEiJ_T0085876.1 MGP_CASTEiJ_G0031828.1 mouse_genomes_project 7 102794463 102795344 + MGP_CASTEiJ_P0085876 Olfr467 protein_coding protein_coding MGP_CASTEiJ_T0084583.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71343622 71759787 - MGP_CASTEiJ_P0084583 Ntrk3 protein_coding protein_coding MGP_CASTEiJ_T0084584.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71349439 71361317 - MGP_CASTEiJ_P0084584 Ntrk3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084585.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71360953 71759225 - MGP_CASTEiJ_P0084585 Ntrk3 protein_coding protein_coding MGP_CASTEiJ_T0084586.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71360980 71759225 - MGP_CASTEiJ_P0084586 Ntrk3 protein_coding protein_coding MGP_CASTEiJ_T0084587.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71419019 71436091 - MGP_CASTEiJ_P0084587 Ntrk3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084588.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71471445 71759361 - MGP_CASTEiJ_P0084588 Ntrk3 protein_coding protein_coding MGP_CASTEiJ_T0084589.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71473079 71551171 - Ntrk3 protein_coding processed_transcript MGP_CASTEiJ_T0084590.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71473381 71528263 - MGP_CASTEiJ_P0084590 Ntrk3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084591.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71528224 71626496 - Ntrk3 protein_coding processed_transcript MGP_CASTEiJ_T0084592.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71623999 71759354 - Ntrk3 protein_coding retained_intron MGP_CASTEiJ_T0084593.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71653557 71753322 - Ntrk3 protein_coding processed_transcript MGP_CASTEiJ_T0084594.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71693487 71806658 - Ntrk3 protein_coding processed_transcript MGP_CASTEiJ_T0084595.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71759225 71761445 - Ntrk3 protein_coding processed_transcript MGP_CASTEiJ_T0084596.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71763818 71906724 - Ntrk3 protein_coding processed_transcript MGP_CASTEiJ_T0084597.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71770131 71926540 - Ntrk3 protein_coding processed_transcript MGP_CASTEiJ_T0084598.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71777178 71840469 - Ntrk3 protein_coding processed_transcript MGP_CASTEiJ_T0084599.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71915215 71926542 - Ntrk3 protein_coding processed_transcript MGP_CASTEiJ_T0084600.1 MGP_CASTEiJ_G0031409.1 mouse_genomes_project 7 71919040 71926542 - Ntrk3 protein_coding processed_transcript MGP_CASTEiJ_T0081728.1 MGP_CASTEiJ_G0030690.1 mouse_genomes_project 7 5881939 5882836 + MGP_CASTEiJ_P0081728 Vmn1r70 protein_coding protein_coding MGP_CASTEiJ_T0015258.1 MGP_CASTEiJ_G0013421.1 mouse_genomes_project 7 79143027 79143604 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084994.1 MGP_CASTEiJ_G0031499.1 mouse_genomes_project 7 80388585 80389641 - MGP_CASTEiJ_P0084994 Olfr308 protein_coding protein_coding MGP_CASTEiJ_T0084145.1 MGP_CASTEiJ_G0031308.1 mouse_genomes_project 7 39573185 39607769 - MGP_CASTEiJ_P0084145 Tsg101 protein_coding protein_coding MGP_CASTEiJ_T0084146.1 MGP_CASTEiJ_G0031308.1 mouse_genomes_project 7 39573263 39575238 - Tsg101 protein_coding processed_transcript MGP_CASTEiJ_T0084147.1 MGP_CASTEiJ_G0031308.1 mouse_genomes_project 7 39587635 39602233 - MGP_CASTEiJ_P0084147 Tsg101 protein_coding protein_coding MGP_CASTEiJ_T0084148.1 MGP_CASTEiJ_G0031308.1 mouse_genomes_project 7 39594387 39596862 - Tsg101 protein_coding retained_intron MGP_CASTEiJ_T0084149.1 MGP_CASTEiJ_G0031308.1 mouse_genomes_project 7 39594849 39607737 - MGP_CASTEiJ_P0084149 Tsg101 protein_coding protein_coding MGP_CASTEiJ_T0017671.1 MGP_CASTEiJ_G0015009.1 mouse_genomes_project 7 124083524 124097296 - 4931431B13Rik processed_transcript antisense MGP_CASTEiJ_T0017672.1 MGP_CASTEiJ_G0015009.1 mouse_genomes_project 7 124096043 124097292 - 4931431B13Rik processed_transcript retained_intron MGP_CASTEiJ_T0086328.1 MGP_CASTEiJ_G0031955.1 mouse_genomes_project 7 115917024 115992119 + MGP_CASTEiJ_P0086328 Abca16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086329.1 MGP_CASTEiJ_G0031955.1 mouse_genomes_project 7 115931356 116050666 + MGP_CASTEiJ_P0086329 Abca16 protein_coding protein_coding MGP_CASTEiJ_T0086330.1 MGP_CASTEiJ_G0031955.1 mouse_genomes_project 7 115931356 116050666 + MGP_CASTEiJ_P0086330 Abca16 protein_coding protein_coding MGP_CASTEiJ_T0086331.1 MGP_CASTEiJ_G0031955.1 mouse_genomes_project 7 115984019 116001501 + Abca16 protein_coding retained_intron MGP_CASTEiJ_T0085536.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96957966 96972597 + Pgap2 protein_coding processed_transcript MGP_CASTEiJ_T0085537.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96958093 96977365 + MGP_CASTEiJ_P0085537 Pgap2 protein_coding protein_coding MGP_CASTEiJ_T0085538.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96958117 96989562 + MGP_CASTEiJ_P0085538 Pgap2 protein_coding protein_coding MGP_CASTEiJ_T0085539.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96958127 96977425 + MGP_CASTEiJ_P0085539 Pgap2 protein_coding protein_coding MGP_CASTEiJ_T0085540.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96958279 96968720 + Pgap2 protein_coding processed_transcript MGP_CASTEiJ_T0085541.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96958290 96987457 + Pgap2 protein_coding retained_intron MGP_CASTEiJ_T0085542.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96971553 96987163 + MGP_CASTEiJ_P0085542 Pgap2 protein_coding protein_coding MGP_CASTEiJ_T0085543.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96971757 96988224 + MGP_CASTEiJ_P0085543 Pgap2 protein_coding protein_coding MGP_CASTEiJ_T0085544.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96972141 96989562 + MGP_CASTEiJ_P0085544 Pgap2 protein_coding protein_coding MGP_CASTEiJ_T0085545.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96972158 96988222 + MGP_CASTEiJ_P0085545 Pgap2 protein_coding protein_coding MGP_CASTEiJ_T0085546.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96972163 96988772 + MGP_CASTEiJ_P0085546 Pgap2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085547.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96972166 96987229 + MGP_CASTEiJ_P0085547 Pgap2 protein_coding protein_coding MGP_CASTEiJ_T0085548.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96972182 96988758 + MGP_CASTEiJ_P0085548 Pgap2 protein_coding protein_coding MGP_CASTEiJ_T0085549.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96972184 96978091 + Pgap2 protein_coding retained_intron MGP_CASTEiJ_T0085550.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96972185 96988658 + Pgap2 protein_coding processed_transcript MGP_CASTEiJ_T0085551.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96972188 96977334 + MGP_CASTEiJ_P0085551 Pgap2 protein_coding protein_coding MGP_CASTEiJ_T0085552.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96972191 96987414 + Pgap2 protein_coding retained_intron MGP_CASTEiJ_T0085553.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96972197 96988616 + MGP_CASTEiJ_P0085553 Pgap2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085554.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96972198 96988729 + MGP_CASTEiJ_P0085554 Pgap2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085555.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96972206 96989555 + Pgap2 protein_coding processed_transcript MGP_CASTEiJ_T0085556.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96972395 96987294 + MGP_CASTEiJ_P0085556 Pgap2 protein_coding protein_coding MGP_CASTEiJ_T0085557.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96976797 96987331 + MGP_CASTEiJ_P0085557 Pgap2 protein_coding protein_coding MGP_CASTEiJ_T0085558.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96976810 96988548 + MGP_CASTEiJ_P0085558 Pgap2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085559.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96980782 96989555 + MGP_CASTEiJ_P0085559 Pgap2 protein_coding protein_coding MGP_CASTEiJ_T0085560.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96986849 96988526 + MGP_CASTEiJ_P0085560 Pgap2 protein_coding protein_coding MGP_CASTEiJ_T0085561.1 MGP_CASTEiJ_G0031632.1 mouse_genomes_project 7 96986898 96988650 + Pgap2 protein_coding retained_intron MGP_CASTEiJ_T0082256.1 MGP_CASTEiJ_G0030858.1 mouse_genomes_project 7 16022406 16023327 + MGP_CASTEiJ_P0082256 Vmn1r178 protein_coding protein_coding MGP_CASTEiJ_T0015336.1 MGP_CASTEiJ_G0013499.1 mouse_genomes_project 7 140717652 140718194 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082049.1 MGP_CASTEiJ_G0030796.1 mouse_genomes_project 7 13740100 13741665 + MGP_CASTEiJ_P0082049 Nanos2 protein_coding protein_coding MGP_CASTEiJ_T0102514.1 MGP_CASTEiJ_G0039238.1 mouse_genomes_project 7 34467291 34467530 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100008.1 MGP_CASTEiJ_G0036921.1 mouse_genomes_project 7 44964762 44964918 - Gm22211 snRNA snRNA MGP_CASTEiJ_T0005003.1 MGP_CASTEiJ_G0004277.1 mouse_genomes_project 7 1337172 1357673 - Gm15494 antisense antisense MGP_CASTEiJ_T0005004.1 MGP_CASTEiJ_G0004277.1 mouse_genomes_project 7 1337972 1357709 - Gm15494 antisense antisense MGP_CASTEiJ_T0002238.1 MGP_CASTEiJ_G0002157.1 mouse_genomes_project 7 123303311 123304713 + TEC TEC MGP_CASTEiJ_T0101283.1 MGP_CASTEiJ_G0038196.1 mouse_genomes_project 7 139180956 139181050 + Gm25370 snoRNA snoRNA MGP_CASTEiJ_T0085885.1 MGP_CASTEiJ_G0031837.1 mouse_genomes_project 7 103023856 103024828 - MGP_CASTEiJ_P0085885 Olfr482 protein_coding protein_coding MGP_CASTEiJ_T0010631.1 MGP_CASTEiJ_G0008819.1 mouse_genomes_project 7 141157547 141157632 + Mir3105 miRNA miRNA MGP_CASTEiJ_T0002228.1 MGP_CASTEiJ_G0002147.1 mouse_genomes_project 7 118252705 118254020 + TEC TEC MGP_CASTEiJ_T0087605.1 MGP_CASTEiJ_G0032235.1 mouse_genomes_project 7 138018586 138029938 + MGP_CASTEiJ_P0087605 B4galnt4 protein_coding protein_coding MGP_CASTEiJ_T0084044.1 MGP_CASTEiJ_G0031285.1 mouse_genomes_project 7 38429162 38467403 - MGP_CASTEiJ_P0084044 Grin2d protein_coding protein_coding MGP_CASTEiJ_T0084045.1 MGP_CASTEiJ_G0031285.1 mouse_genomes_project 7 38466658 38471212 - MGP_CASTEiJ_P0084045 Grin2d protein_coding protein_coding MGP_CASTEiJ_T0085728.1 MGP_CASTEiJ_G0031774.1 mouse_genomes_project 7 100462411 100491262 - MGP_CASTEiJ_P0085728 Fam160a2 protein_coding protein_coding MGP_CASTEiJ_T0085729.1 MGP_CASTEiJ_G0031774.1 mouse_genomes_project 7 100462411 100491240 - MGP_CASTEiJ_P0085729 Fam160a2 protein_coding protein_coding MGP_CASTEiJ_T0085731.1 MGP_CASTEiJ_G0031774.1 mouse_genomes_project 7 100469805 100491193 - MGP_CASTEiJ_P0085731 Fam160a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085732.1 MGP_CASTEiJ_G0031774.1 mouse_genomes_project 7 100469805 100491262 - MGP_CASTEiJ_P0085732 Fam160a2 protein_coding protein_coding MGP_CASTEiJ_T0085733.1 MGP_CASTEiJ_G0031774.1 mouse_genomes_project 7 100469806 100491216 - MGP_CASTEiJ_P0085733 Fam160a2 protein_coding protein_coding MGP_CASTEiJ_T0085734.1 MGP_CASTEiJ_G0031774.1 mouse_genomes_project 7 100469806 100491219 - MGP_CASTEiJ_P0085734 Fam160a2 protein_coding protein_coding MGP_CASTEiJ_T0085735.1 MGP_CASTEiJ_G0031774.1 mouse_genomes_project 7 100470271 100473174 - Fam160a2 protein_coding retained_intron MGP_CASTEiJ_T0085736.1 MGP_CASTEiJ_G0031774.1 mouse_genomes_project 7 100476579 100480301 - Fam160a2 protein_coding retained_intron MGP_CASTEiJ_T0008610.1 MGP_CASTEiJ_G0006970.1 mouse_genomes_project 7 27157113 27164391 + Gm26790 lincRNA lincRNA MGP_CASTEiJ_T0017648.1 MGP_CASTEiJ_G0014996.1 mouse_genomes_project 7 91311748 91359731 - C230038L03Rik processed_transcript antisense MGP_CASTEiJ_T0017649.1 MGP_CASTEiJ_G0014996.1 mouse_genomes_project 7 91323679 91362837 - C230038L03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017650.1 MGP_CASTEiJ_G0014996.1 mouse_genomes_project 7 91360274 91364184 - C230038L03Rik processed_transcript antisense MGP_CASTEiJ_T0017651.1 MGP_CASTEiJ_G0014996.1 mouse_genomes_project 7 91360606 91364576 - C230038L03Rik processed_transcript antisense MGP_CASTEiJ_T0084343.1 MGP_CASTEiJ_G0031365.1 mouse_genomes_project 7 56414902 56475370 - MGP_CASTEiJ_P0084343 Klf13 protein_coding protein_coding MGP_CASTEiJ_T0084344.1 MGP_CASTEiJ_G0031365.1 mouse_genomes_project 7 56419939 56472769 - MGP_CASTEiJ_P0084344 Klf13 protein_coding protein_coding MGP_CASTEiJ_T0084345.1 MGP_CASTEiJ_G0031365.1 mouse_genomes_project 7 56419957 56459188 - MGP_CASTEiJ_P0084345 Klf13 protein_coding protein_coding MGP_CASTEiJ_T0084347.1 MGP_CASTEiJ_G0031365.1 mouse_genomes_project 7 56471865 56472800 - Klf13 protein_coding retained_intron MGP_CASTEiJ_T0083615.1 MGP_CASTEiJ_G0031172.1 mouse_genomes_project 7 35864003 35870270 + MGP_CASTEiJ_P0083615 Ctu1 protein_coding protein_coding MGP_CASTEiJ_T0084520.1 MGP_CASTEiJ_G0031395.1 mouse_genomes_project 7 60911442 60944620 - MGP_CASTEiJ_P0084520 Pgpep1l protein_coding protein_coding MGP_CASTEiJ_T0008798.1 MGP_CASTEiJ_G0007096.1 mouse_genomes_project 7 123113182 123117965 + lincRNA lincRNA MGP_CASTEiJ_T0008799.1 MGP_CASTEiJ_G0007096.1 mouse_genomes_project 7 123113667 123118377 + lincRNA lincRNA MGP_CASTEiJ_T0086970.1 MGP_CASTEiJ_G0032076.1 mouse_genomes_project 7 123574976 123580450 + MGP_CASTEiJ_P0086970 Ctf1 protein_coding protein_coding MGP_CASTEiJ_T0086971.1 MGP_CASTEiJ_G0032076.1 mouse_genomes_project 7 123575177 123579574 + MGP_CASTEiJ_P0086971 Ctf1 protein_coding protein_coding MGP_CASTEiJ_T0086972.1 MGP_CASTEiJ_G0032076.1 mouse_genomes_project 7 123575184 123579834 + MGP_CASTEiJ_P0086972 Ctf1 protein_coding protein_coding MGP_CASTEiJ_T0086973.1 MGP_CASTEiJ_G0032076.1 mouse_genomes_project 7 123575540 123579270 + Ctf1 protein_coding processed_transcript MGP_CASTEiJ_T0086974.1 MGP_CASTEiJ_G0032076.1 mouse_genomes_project 7 123575797 123579283 + Ctf1 protein_coding processed_transcript MGP_CASTEiJ_T0087678.1 MGP_CASTEiJ_G0032251.1 mouse_genomes_project 7 138307217 138315342 + Tmem80 protein_coding processed_transcript MGP_CASTEiJ_T0087679.1 MGP_CASTEiJ_G0032251.1 mouse_genomes_project 7 138307366 138320686 + MGP_CASTEiJ_P0087679 Tmem80 protein_coding protein_coding MGP_CASTEiJ_T0087680.1 MGP_CASTEiJ_G0032251.1 mouse_genomes_project 7 138307366 138319745 + MGP_CASTEiJ_P0087680 Tmem80 protein_coding protein_coding MGP_CASTEiJ_T0087681.1 MGP_CASTEiJ_G0032251.1 mouse_genomes_project 7 138307608 138320339 + MGP_CASTEiJ_P0087681 Tmem80 protein_coding protein_coding MGP_CASTEiJ_T0087682.1 MGP_CASTEiJ_G0032251.1 mouse_genomes_project 7 138307608 138320686 + MGP_CASTEiJ_P0087682 Tmem80 protein_coding protein_coding MGP_CASTEiJ_T0087683.1 MGP_CASTEiJ_G0032251.1 mouse_genomes_project 7 138307638 138315383 + Tmem80 protein_coding processed_transcript MGP_CASTEiJ_T0087684.1 MGP_CASTEiJ_G0032251.1 mouse_genomes_project 7 138315369 138320341 + MGP_CASTEiJ_P0087684 Tmem80 protein_coding protein_coding MGP_CASTEiJ_T0087685.1 MGP_CASTEiJ_G0032251.1 mouse_genomes_project 7 138315436 138319595 + MGP_CASTEiJ_P0087685 Tmem80 protein_coding protein_coding MGP_CASTEiJ_T0087686.1 MGP_CASTEiJ_G0032251.1 mouse_genomes_project 7 138317194 138319675 + Tmem80 protein_coding retained_intron MGP_CASTEiJ_T0008829.1 MGP_CASTEiJ_G0007117.1 mouse_genomes_project 7 142094213 142097115 - Gm26793 lincRNA lincRNA MGP_CASTEiJ_T0082863.1 MGP_CASTEiJ_G0031010.1 mouse_genomes_project 7 21705436 21721610 + Rasgrp4 protein_coding retained_intron MGP_CASTEiJ_T0082864.1 MGP_CASTEiJ_G0031010.1 mouse_genomes_project 7 21705436 21723278 + Rasgrp4 protein_coding retained_intron MGP_CASTEiJ_T0082865.1 MGP_CASTEiJ_G0031010.1 mouse_genomes_project 7 21705436 21720845 + MGP_CASTEiJ_P0082865 Rasgrp4 protein_coding protein_coding MGP_CASTEiJ_T0082866.1 MGP_CASTEiJ_G0031010.1 mouse_genomes_project 7 21705436 21724852 + MGP_CASTEiJ_P0082866 Rasgrp4 protein_coding protein_coding MGP_CASTEiJ_T0082867.1 MGP_CASTEiJ_G0031010.1 mouse_genomes_project 7 21705436 21724852 + MGP_CASTEiJ_P0082867 Rasgrp4 protein_coding protein_coding MGP_CASTEiJ_T0082868.1 MGP_CASTEiJ_G0031010.1 mouse_genomes_project 7 21705436 21724852 + MGP_CASTEiJ_P0082868 Rasgrp4 protein_coding protein_coding MGP_CASTEiJ_T0082869.1 MGP_CASTEiJ_G0031010.1 mouse_genomes_project 7 21705436 21726269 + MGP_CASTEiJ_P0082869 Rasgrp4 protein_coding protein_coding MGP_CASTEiJ_T0082870.1 MGP_CASTEiJ_G0031010.1 mouse_genomes_project 7 21705436 21726245 + MGP_CASTEiJ_P0082870 Rasgrp4 protein_coding protein_coding MGP_CASTEiJ_T0082871.1 MGP_CASTEiJ_G0031010.1 mouse_genomes_project 7 21705436 21723937 + MGP_CASTEiJ_P0082871 Rasgrp4 protein_coding protein_coding MGP_CASTEiJ_T0082872.1 MGP_CASTEiJ_G0031010.1 mouse_genomes_project 7 21705436 21724852 + MGP_CASTEiJ_P0082872 Rasgrp4 protein_coding protein_coding MGP_CASTEiJ_T0082873.1 MGP_CASTEiJ_G0031010.1 mouse_genomes_project 7 21705436 21724852 + MGP_CASTEiJ_P0082873 Rasgrp4 protein_coding protein_coding MGP_CASTEiJ_T0082874.1 MGP_CASTEiJ_G0031010.1 mouse_genomes_project 7 21705436 21724852 + MGP_CASTEiJ_P0082874 Rasgrp4 protein_coding protein_coding MGP_CASTEiJ_T0082875.1 MGP_CASTEiJ_G0031010.1 mouse_genomes_project 7 21705437 21723813 + MGP_CASTEiJ_P0082875 Rasgrp4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082876.1 MGP_CASTEiJ_G0031010.1 mouse_genomes_project 7 21722486 21723935 + MGP_CASTEiJ_P0082876 Rasgrp4 protein_coding protein_coding MGP_CASTEiJ_T0085635.1 MGP_CASTEiJ_G0031701.1 mouse_genomes_project 7 98566450 98567395 - MGP_CASTEiJ_P0085635 Olfr629 protein_coding protein_coding MGP_CASTEiJ_T0082952.1 MGP_CASTEiJ_G0031028.1 mouse_genomes_project 7 22488452 22501884 - MGP_CASTEiJ_P0082952 Zfp27 protein_coding protein_coding MGP_CASTEiJ_T0082953.1 MGP_CASTEiJ_G0031028.1 mouse_genomes_project 7 22488835 22495752 - MGP_CASTEiJ_P0082953 Zfp27 protein_coding protein_coding MGP_CASTEiJ_T0082954.1 MGP_CASTEiJ_G0031028.1 mouse_genomes_project 7 22488836 22501412 - MGP_CASTEiJ_P0082954 Zfp27 protein_coding protein_coding MGP_CASTEiJ_T0082955.1 MGP_CASTEiJ_G0031028.1 mouse_genomes_project 7 22488836 22501843 - MGP_CASTEiJ_P0082955 Zfp27 protein_coding protein_coding MGP_CASTEiJ_T0082956.1 MGP_CASTEiJ_G0031028.1 mouse_genomes_project 7 22489199 22494124 - MGP_CASTEiJ_P0082956 Zfp27 protein_coding protein_coding MGP_CASTEiJ_T0082957.1 MGP_CASTEiJ_G0031028.1 mouse_genomes_project 7 22495500 22501368 - Zfp27 protein_coding processed_transcript MGP_CASTEiJ_T0084707.1 MGP_CASTEiJ_G0031431.1 mouse_genomes_project 7 73146018 73190533 - MGP_CASTEiJ_P0084707 Ap3s2 protein_coding protein_coding MGP_CASTEiJ_T0084708.1 MGP_CASTEiJ_G0031431.1 mouse_genomes_project 7 73152467 73190480 - MGP_CASTEiJ_P0084708 Ap3s2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0015261.1 MGP_CASTEiJ_G0013424.1 mouse_genomes_project 7 82557600 82558156 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102463.1 MGP_CASTEiJ_G0039188.1 mouse_genomes_project 7 7285495 7286482 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102492.1 MGP_CASTEiJ_G0039217.1 mouse_genomes_project 7 12332891 12339326 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0083160.1 MGP_CASTEiJ_G0031077.1 mouse_genomes_project 7 23364082 23373018 + Atp4a protein_coding retained_intron MGP_CASTEiJ_T0083161.1 MGP_CASTEiJ_G0031077.1 mouse_genomes_project 7 23364082 23377514 + MGP_CASTEiJ_P0083161 Atp4a protein_coding protein_coding MGP_CASTEiJ_T0083162.1 MGP_CASTEiJ_G0031077.1 mouse_genomes_project 7 23364105 23377513 + MGP_CASTEiJ_P0083162 Atp4a protein_coding protein_coding MGP_CASTEiJ_T0083163.1 MGP_CASTEiJ_G0031077.1 mouse_genomes_project 7 23369780 23372767 + MGP_CASTEiJ_P0083163 Atp4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083164.1 MGP_CASTEiJ_G0031077.1 mouse_genomes_project 7 23374538 23377149 + Atp4a protein_coding retained_intron MGP_CASTEiJ_T0082159.1 MGP_CASTEiJ_G0030822.1 mouse_genomes_project 7 14200363 14221287 + MGP_CASTEiJ_P0082159 Ckm protein_coding protein_coding MGP_CASTEiJ_T0082679.1 MGP_CASTEiJ_G0030959.1 mouse_genomes_project 7 19991499 20044066 + MGP_CASTEiJ_P0082679 protein_coding protein_coding MGP_CASTEiJ_T0082680.1 MGP_CASTEiJ_G0030959.1 mouse_genomes_project 7 19991589 20055045 + MGP_CASTEiJ_P0082680 protein_coding protein_coding MGP_CASTEiJ_T0082681.1 MGP_CASTEiJ_G0030959.1 mouse_genomes_project 7 19992678 20029698 + protein_coding processed_transcript MGP_CASTEiJ_T0082682.1 MGP_CASTEiJ_G0030959.1 mouse_genomes_project 7 19995899 20031576 + MGP_CASTEiJ_P0082682 protein_coding protein_coding MGP_CASTEiJ_T0082683.1 MGP_CASTEiJ_G0030959.1 mouse_genomes_project 7 20004794 20044090 + MGP_CASTEiJ_P0082683 protein_coding protein_coding MGP_CASTEiJ_T0082684.1 MGP_CASTEiJ_G0030959.1 mouse_genomes_project 7 20006771 20055025 + MGP_CASTEiJ_P0082684 protein_coding protein_coding MGP_CASTEiJ_T0082685.1 MGP_CASTEiJ_G0030959.1 mouse_genomes_project 7 20007027 20031629 + MGP_CASTEiJ_P0082685 protein_coding protein_coding MGP_CASTEiJ_T0082686.1 MGP_CASTEiJ_G0030959.1 mouse_genomes_project 7 20043745 20066354 + protein_coding retained_intron MGP_CASTEiJ_T0082687.1 MGP_CASTEiJ_G0030959.1 mouse_genomes_project 7 20045779 20051978 + protein_coding retained_intron MGP_CASTEiJ_T0102537.1 MGP_CASTEiJ_G0039261.1 mouse_genomes_project 7 40791698 40791900 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008766.1 MGP_CASTEiJ_G0007076.1 mouse_genomes_project 7 110285982 110323498 + Gm44944 lincRNA lincRNA MGP_CASTEiJ_T0008767.1 MGP_CASTEiJ_G0007076.1 mouse_genomes_project 7 110322076 110323787 + Gm44944 lincRNA lincRNA MGP_CASTEiJ_T0008768.1 MGP_CASTEiJ_G0007076.1 mouse_genomes_project 7 110323511 110323816 + Gm44944 lincRNA lincRNA MGP_CASTEiJ_T0008680.1 MGP_CASTEiJ_G0007023.1 mouse_genomes_project 7 66080321 66084651 - Gm6567 lincRNA lincRNA MGP_CASTEiJ_T0002165.1 MGP_CASTEiJ_G0002085.1 mouse_genomes_project 7 48806077 48807235 - TEC TEC MGP_CASTEiJ_T0087207.1 MGP_CASTEiJ_G0032118.1 mouse_genomes_project 7 126397165 126530910 - MGP_CASTEiJ_P0087207 Ate1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0087208.1 MGP_CASTEiJ_G0032118.1 mouse_genomes_project 7 126397205 126530979 - MGP_CASTEiJ_P0087208 Ate1 protein_coding protein_coding MGP_CASTEiJ_T0087209.1 MGP_CASTEiJ_G0032118.1 mouse_genomes_project 7 126397205 126530988 - MGP_CASTEiJ_P0087209 Ate1 protein_coding protein_coding MGP_CASTEiJ_T0087210.1 MGP_CASTEiJ_G0032118.1 mouse_genomes_project 7 126400229 126531410 - MGP_CASTEiJ_P0087210 Ate1 protein_coding protein_coding MGP_CASTEiJ_T0087211.1 MGP_CASTEiJ_G0032118.1 mouse_genomes_project 7 126400229 126531410 - MGP_CASTEiJ_P0087211 Ate1 protein_coding protein_coding MGP_CASTEiJ_T0015157.1 MGP_CASTEiJ_G0013320.1 mouse_genomes_project 7 16969316 16969653 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002226.1 MGP_CASTEiJ_G0002145.1 mouse_genomes_project 7 118054842 118057983 + TEC TEC MGP_CASTEiJ_T0086303.1 MGP_CASTEiJ_G0031946.1 mouse_genomes_project 7 115354081 115398960 - MGP_CASTEiJ_P0086303 Dcun1d3 protein_coding protein_coding MGP_CASTEiJ_T0086304.1 MGP_CASTEiJ_G0031946.1 mouse_genomes_project 7 115356735 115398758 - MGP_CASTEiJ_P0086304 Dcun1d3 protein_coding protein_coding MGP_CASTEiJ_T0086305.1 MGP_CASTEiJ_G0031946.1 mouse_genomes_project 7 115358245 115399507 - MGP_CASTEiJ_P0086305 Dcun1d3 protein_coding protein_coding MGP_CASTEiJ_T0086306.1 MGP_CASTEiJ_G0031946.1 mouse_genomes_project 7 115358913 115363339 - MGP_CASTEiJ_P0086306 Dcun1d3 protein_coding protein_coding MGP_CASTEiJ_T0086307.1 MGP_CASTEiJ_G0031946.1 mouse_genomes_project 7 115361117 115363311 - MGP_CASTEiJ_P0086307 Dcun1d3 protein_coding protein_coding MGP_CASTEiJ_T0008591.1 MGP_CASTEiJ_G0006952.1 mouse_genomes_project 7 17883370 17891047 + lincRNA lincRNA MGP_CASTEiJ_T0087172.1 MGP_CASTEiJ_G0032116.1 mouse_genomes_project 7 125565806 125616016 + MGP_CASTEiJ_P0087172 Wdr11 protein_coding protein_coding MGP_CASTEiJ_T0087173.1 MGP_CASTEiJ_G0032116.1 mouse_genomes_project 7 125565851 125604104 + Wdr11 protein_coding retained_intron MGP_CASTEiJ_T0087174.1 MGP_CASTEiJ_G0032116.1 mouse_genomes_project 7 125565861 125590764 + Wdr11 protein_coding retained_intron MGP_CASTEiJ_T0087175.1 MGP_CASTEiJ_G0032116.1 mouse_genomes_project 7 125565876 125611290 + MGP_CASTEiJ_P0087175 Wdr11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0087176.1 MGP_CASTEiJ_G0032116.1 mouse_genomes_project 7 125567023 125613140 + MGP_CASTEiJ_P0087176 Wdr11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087177.1 MGP_CASTEiJ_G0032116.1 mouse_genomes_project 7 125580882 125586274 + Wdr11 protein_coding processed_transcript MGP_CASTEiJ_T0087178.1 MGP_CASTEiJ_G0032116.1 mouse_genomes_project 7 125582357 125616014 + Wdr11 protein_coding retained_intron MGP_CASTEiJ_T0087179.1 MGP_CASTEiJ_G0032116.1 mouse_genomes_project 7 125586272 125592512 + MGP_CASTEiJ_P0087179 Wdr11 protein_coding protein_coding MGP_CASTEiJ_T0087180.1 MGP_CASTEiJ_G0032116.1 mouse_genomes_project 7 125603510 125616012 + Wdr11 protein_coding retained_intron MGP_CASTEiJ_T0087181.1 MGP_CASTEiJ_G0032116.1 mouse_genomes_project 7 125609336 125613943 + MGP_CASTEiJ_P0087181 Wdr11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0008694.1 MGP_CASTEiJ_G0007034.1 mouse_genomes_project 7 66858349 66869385 + lincRNA lincRNA MGP_CASTEiJ_T0085706.1 MGP_CASTEiJ_G0031752.1 mouse_genomes_project 7 99755314 99759221 - MGP_CASTEiJ_P0085706 protein_coding protein_coding MGP_CASTEiJ_T0101232.1 MGP_CASTEiJ_G0038145.1 mouse_genomes_project 7 37605402 37605489 - Snord35b snoRNA snoRNA MGP_CASTEiJ_T0101231.1 MGP_CASTEiJ_G0038144.1 mouse_genomes_project 7 36639542 36639635 + Gm23991 snoRNA snoRNA MGP_CASTEiJ_T0085718.1 MGP_CASTEiJ_G0031764.1 mouse_genomes_project 7 100166449 100169626 - MGP_CASTEiJ_P0085718 protein_coding protein_coding MGP_CASTEiJ_T0008617.1 MGP_CASTEiJ_G0006977.1 mouse_genomes_project 7 28773944 28779924 + Gm28077 lincRNA lincRNA MGP_CASTEiJ_T0008807.1 MGP_CASTEiJ_G0007103.1 mouse_genomes_project 7 125371966 125377372 - Gm44591 lincRNA lincRNA MGP_CASTEiJ_T0081818.1 MGP_CASTEiJ_G0030725.1 mouse_genomes_project 7 8281993 8282881 - MGP_CASTEiJ_P0081818 Vmn1r87 protein_coding protein_coding MGP_CASTEiJ_T0100050.1 MGP_CASTEiJ_G0036963.1 mouse_genomes_project 7 138069517 138069625 - Gm24962 snRNA snRNA MGP_CASTEiJ_T0015279.1 MGP_CASTEiJ_G0013442.1 mouse_genomes_project 7 94780673 94781921 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015288.1 MGP_CASTEiJ_G0013451.1 mouse_genomes_project 7 98826686 98833064 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082473.1 MGP_CASTEiJ_G0030910.1 mouse_genomes_project 7 17696276 17714610 - MGP_CASTEiJ_P0082473 Lipe protein_coding protein_coding MGP_CASTEiJ_T0082474.1 MGP_CASTEiJ_G0030910.1 mouse_genomes_project 7 17696276 17707585 - MGP_CASTEiJ_P0082474 Lipe protein_coding unknown_likely_coding MGP_CASTEiJ_T0082475.1 MGP_CASTEiJ_G0030910.1 mouse_genomes_project 7 17696288 17717684 - MGP_CASTEiJ_P0082475 Lipe protein_coding protein_coding MGP_CASTEiJ_T0082476.1 MGP_CASTEiJ_G0030910.1 mouse_genomes_project 7 17702115 17703878 - MGP_CASTEiJ_P0082476 Lipe protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082477.1 MGP_CASTEiJ_G0030910.1 mouse_genomes_project 7 17702136 17702770 - Lipe protein_coding retained_intron MGP_CASTEiJ_T0082478.1 MGP_CASTEiJ_G0030910.1 mouse_genomes_project 7 17707536 17709480 - MGP_CASTEiJ_P0082478 Lipe protein_coding protein_coding MGP_CASTEiJ_T0082479.1 MGP_CASTEiJ_G0030910.1 mouse_genomes_project 7 17716432 17717683 - MGP_CASTEiJ_P0082479 Lipe protein_coding protein_coding MGP_CASTEiJ_T0083148.1 MGP_CASTEiJ_G0031073.1 mouse_genomes_project 7 23297145 23308045 - MGP_CASTEiJ_P0083148 Rbm42 protein_coding protein_coding MGP_CASTEiJ_T0083149.1 MGP_CASTEiJ_G0031073.1 mouse_genomes_project 7 23297150 23307872 - MGP_CASTEiJ_P0083149 Rbm42 protein_coding protein_coding MGP_CASTEiJ_T0083150.1 MGP_CASTEiJ_G0031073.1 mouse_genomes_project 7 23301837 23303726 - Rbm42 protein_coding retained_intron MGP_CASTEiJ_T0008713.1 MGP_CASTEiJ_G0007045.1 mouse_genomes_project 7 72830130 72831443 - Gm45168 lincRNA lincRNA MGP_CASTEiJ_T0008714.1 MGP_CASTEiJ_G0007045.1 mouse_genomes_project 7 72830270 72831454 - Gm45168 lincRNA lincRNA MGP_CASTEiJ_T0084077.1 MGP_CASTEiJ_G0031293.1 mouse_genomes_project 7 38714638 38715811 - MGP_CASTEiJ_P0084077 Kcnj11 protein_coding protein_coding MGP_CASTEiJ_T0008760.1 MGP_CASTEiJ_G0007074.1 mouse_genomes_project 7 110192033 110198379 - Gm45020 lincRNA lincRNA MGP_CASTEiJ_T0102555.1 MGP_CASTEiJ_G0039279.1 mouse_genomes_project 7 78881406 78883176 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0085351.1 MGP_CASTEiJ_G0031598.1 mouse_genomes_project 7 95112117 95128232 - MGP_CASTEiJ_P0085351 Dnajb13 protein_coding protein_coding MGP_CASTEiJ_T0085352.1 MGP_CASTEiJ_G0031598.1 mouse_genomes_project 7 95112120 95126659 - Dnajb13 protein_coding processed_transcript MGP_CASTEiJ_T0085353.1 MGP_CASTEiJ_G0031598.1 mouse_genomes_project 7 95112178 95125045 - Dnajb13 protein_coding processed_transcript MGP_CASTEiJ_T0084985.1 MGP_CASTEiJ_G0031491.1 mouse_genomes_project 7 78437381 78440799 + MGP_CASTEiJ_P0084985 Olfr291 protein_coding protein_coding MGP_CASTEiJ_T0015262.1 MGP_CASTEiJ_G0013425.1 mouse_genomes_project 7 82684591 82685574 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081487.1 MGP_CASTEiJ_G0030609.1 mouse_genomes_project 7 1233217 1240332 + MGP_CASTEiJ_P0081487 Ncr1 protein_coding protein_coding MGP_CASTEiJ_T0081488.1 MGP_CASTEiJ_G0030609.1 mouse_genomes_project 7 1233262 1240332 + MGP_CASTEiJ_P0081488 Ncr1 protein_coding protein_coding MGP_CASTEiJ_T0017582.1 MGP_CASTEiJ_G0014972.1 mouse_genomes_project 7 16359162 16360409 + Gm44796 processed_transcript processed_transcript MGP_CASTEiJ_T0008756.1 MGP_CASTEiJ_G0007071.1 mouse_genomes_project 7 108936774 108963592 + Gm29507 lincRNA lincRNA MGP_CASTEiJ_T0005119.1 MGP_CASTEiJ_G0004359.1 mouse_genomes_project 7 92020102 92068842 - Rsf1os1 antisense antisense MGP_CASTEiJ_T0015327.1 MGP_CASTEiJ_G0013490.1 mouse_genomes_project 7 126792157 126792504 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005146.1 MGP_CASTEiJ_G0004375.1 mouse_genomes_project 7 117596379 117603741 + Gm44987 antisense antisense MGP_CASTEiJ_T0015115.1 MGP_CASTEiJ_G0013278.1 mouse_genomes_project 7 1209031 1209392 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0087831.1 MGP_CASTEiJ_G0032276.1 mouse_genomes_project 7 139455960 139467572 - MGP_CASTEiJ_P0087831 Ctsd protein_coding protein_coding MGP_CASTEiJ_T0087832.1 MGP_CASTEiJ_G0032276.1 mouse_genomes_project 7 139460751 139472907 - MGP_CASTEiJ_P0087832 Ctsd protein_coding protein_coding MGP_CASTEiJ_T0087833.1 MGP_CASTEiJ_G0032276.1 mouse_genomes_project 7 139460770 139472688 - MGP_CASTEiJ_P0087833 Ctsd protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087834.1 MGP_CASTEiJ_G0032276.1 mouse_genomes_project 7 139468098 139472688 - Ctsd protein_coding retained_intron MGP_CASTEiJ_T0102503.1 MGP_CASTEiJ_G0039227.1 mouse_genomes_project 7 24797990 24798360 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0084518.1 MGP_CASTEiJ_G0031394.1 mouse_genomes_project 7 60593351 60901484 + MGP_CASTEiJ_P0084518 Igf1r protein_coding unknown_likely_coding MGP_CASTEiJ_T0084519.1 MGP_CASTEiJ_G0031394.1 mouse_genomes_project 7 60611588 60901668 + MGP_CASTEiJ_P0084519 Igf1r protein_coding protein_coding MGP_CASTEiJ_T0010562.1 MGP_CASTEiJ_G0008750.1 mouse_genomes_project 7 37609970 37610044 - Mir5121 miRNA miRNA MGP_CASTEiJ_T0015230.1 MGP_CASTEiJ_G0013393.1 mouse_genomes_project 7 58718196 58718943 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010553.1 MGP_CASTEiJ_G0008741.1 mouse_genomes_project 7 23201161 23201238 + Gm38670 miRNA miRNA MGP_CASTEiJ_T0102526.1 MGP_CASTEiJ_G0039250.1 mouse_genomes_project 7 36383923 36385111 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015221.1 MGP_CASTEiJ_G0013384.1 mouse_genomes_project 7 48716608 48717318 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084080.1 MGP_CASTEiJ_G0031295.1 mouse_genomes_project 7 38817174 38860384 - MGP_CASTEiJ_P0084080 Ush1c protein_coding protein_coding MGP_CASTEiJ_T0084081.1 MGP_CASTEiJ_G0031295.1 mouse_genomes_project 7 38817176 38860412 - MGP_CASTEiJ_P0084081 Ush1c protein_coding protein_coding MGP_CASTEiJ_T0084082.1 MGP_CASTEiJ_G0031295.1 mouse_genomes_project 7 38817183 38860410 - MGP_CASTEiJ_P0084082 Ush1c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084083.1 MGP_CASTEiJ_G0031295.1 mouse_genomes_project 7 38817183 38860423 - MGP_CASTEiJ_P0084083 Ush1c protein_coding protein_coding MGP_CASTEiJ_T0084084.1 MGP_CASTEiJ_G0031295.1 mouse_genomes_project 7 38817457 38860384 - MGP_CASTEiJ_P0084084 Ush1c protein_coding protein_coding MGP_CASTEiJ_T0084085.1 MGP_CASTEiJ_G0031295.1 mouse_genomes_project 7 38817476 38860418 - MGP_CASTEiJ_P0084085 Ush1c protein_coding protein_coding MGP_CASTEiJ_T0084086.1 MGP_CASTEiJ_G0031295.1 mouse_genomes_project 7 38817496 38823595 - Ush1c protein_coding retained_intron MGP_CASTEiJ_T0084087.1 MGP_CASTEiJ_G0031295.1 mouse_genomes_project 7 38822849 38841622 - Ush1c protein_coding processed_transcript MGP_CASTEiJ_T0083055.1 MGP_CASTEiJ_G0031053.1 mouse_genomes_project 7 22997963 23005262 - MGP_CASTEiJ_P0083055 Lrfn3 protein_coding protein_coding MGP_CASTEiJ_T0087616.1 MGP_CASTEiJ_G0032237.1 mouse_genomes_project 7 138049955 138059288 - MGP_CASTEiJ_P0087616 Sigirr protein_coding protein_coding MGP_CASTEiJ_T0085741.1 MGP_CASTEiJ_G0031778.1 mouse_genomes_project 7 100586169 100587802 - MGP_CASTEiJ_P0085741 Prkcdbp protein_coding protein_coding MGP_CASTEiJ_T0008673.1 MGP_CASTEiJ_G0007016.1 mouse_genomes_project 7 64291656 64301126 + lincRNA lincRNA MGP_CASTEiJ_T0085628.1 MGP_CASTEiJ_G0031694.1 mouse_genomes_project 7 98384064 98385237 + MGP_CASTEiJ_P0085628 protein_coding protein_coding MGP_CASTEiJ_T0084162.1 MGP_CASTEiJ_G0031317.1 mouse_genomes_project 7 40044377 40175022 - MGP_CASTEiJ_P0084162 protein_coding protein_coding MGP_CASTEiJ_T0084163.1 MGP_CASTEiJ_G0031317.1 mouse_genomes_project 7 40044378 40239760 - MGP_CASTEiJ_P0084163 protein_coding protein_coding MGP_CASTEiJ_T0099998.1 MGP_CASTEiJ_G0036911.1 mouse_genomes_project 7 13437120 13437227 - Gm24464 snRNA snRNA MGP_CASTEiJ_T0087747.1 MGP_CASTEiJ_G0032258.1 mouse_genomes_project 7 138443615 138448794 + MGP_CASTEiJ_P0087747 Rplp2 protein_coding protein_coding MGP_CASTEiJ_T0087748.1 MGP_CASTEiJ_G0032258.1 mouse_genomes_project 7 138443876 138444861 + Rplp2 protein_coding retained_intron MGP_CASTEiJ_T0087749.1 MGP_CASTEiJ_G0032258.1 mouse_genomes_project 7 138443914 138445272 + Rplp2 protein_coding retained_intron MGP_CASTEiJ_T0087750.1 MGP_CASTEiJ_G0032258.1 mouse_genomes_project 7 138443957 138448558 + MGP_CASTEiJ_P0087750 Rplp2 protein_coding protein_coding MGP_CASTEiJ_T0087751.1 MGP_CASTEiJ_G0032258.1 mouse_genomes_project 7 138444095 138448558 + MGP_CASTEiJ_P0087751 Rplp2 protein_coding protein_coding MGP_CASTEiJ_T0087752.1 MGP_CASTEiJ_G0032258.1 mouse_genomes_project 7 138448033 138448557 + Rplp2 protein_coding processed_transcript MGP_CASTEiJ_T0086831.1 MGP_CASTEiJ_G0032048.1 mouse_genomes_project 7 122908368 122924092 - MGP_CASTEiJ_P0086831 Qprt protein_coding unknown_likely_coding MGP_CASTEiJ_T0086832.1 MGP_CASTEiJ_G0032048.1 mouse_genomes_project 7 122909341 122922262 - Qprt protein_coding processed_transcript MGP_CASTEiJ_T0086833.1 MGP_CASTEiJ_G0032048.1 mouse_genomes_project 7 122916041 122922239 - Qprt protein_coding processed_transcript MGP_CASTEiJ_T0087368.1 MGP_CASTEiJ_G0032154.1 mouse_genomes_project 7 130174763 130542243 - MGP_CASTEiJ_P0087368 Adam12 protein_coding protein_coding MGP_CASTEiJ_T0087369.1 MGP_CASTEiJ_G0032154.1 mouse_genomes_project 7 130177762 130265786 - MGP_CASTEiJ_P0087369 Adam12 protein_coding protein_coding MGP_CASTEiJ_T0087370.1 MGP_CASTEiJ_G0032154.1 mouse_genomes_project 7 130279971 130549179 - MGP_CASTEiJ_P0087370 Adam12 protein_coding protein_coding MGP_CASTEiJ_T0087371.1 MGP_CASTEiJ_G0032154.1 mouse_genomes_project 7 130286890 130549320 - MGP_CASTEiJ_P0087371 Adam12 protein_coding protein_coding MGP_CASTEiJ_T0087372.1 MGP_CASTEiJ_G0032154.1 mouse_genomes_project 7 130488479 130489472 - Adam12 protein_coding retained_intron MGP_CASTEiJ_T0087373.1 MGP_CASTEiJ_G0032154.1 mouse_genomes_project 7 130508822 130542518 - Adam12 protein_coding processed_transcript MGP_CASTEiJ_T0087539.1 MGP_CASTEiJ_G0032210.1 mouse_genomes_project 7 137530415 137531459 + MGP_CASTEiJ_P0087539 protein_coding protein_coding MGP_CASTEiJ_T0086263.1 MGP_CASTEiJ_G0031934.1 mouse_genomes_project 7 114635091 114675004 - MGP_CASTEiJ_P0086263 Gpr139 protein_coding protein_coding MGP_CASTEiJ_T0084553.1 MGP_CASTEiJ_G0031402.1 mouse_genomes_project 7 66757837 66802368 + MGP_CASTEiJ_P0084553 Fam174b protein_coding protein_coding MGP_CASTEiJ_T0084554.1 MGP_CASTEiJ_G0031402.1 mouse_genomes_project 7 66787295 66800604 + MGP_CASTEiJ_P0084554 Fam174b protein_coding protein_coding MGP_CASTEiJ_T0084555.1 MGP_CASTEiJ_G0031402.1 mouse_genomes_project 7 66787411 66801467 + Fam174b protein_coding retained_intron MGP_CASTEiJ_T0084699.1 MGP_CASTEiJ_G0031427.1 mouse_genomes_project 7 73006527 73055739 + MGP_CASTEiJ_P0084699 Wdr93 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084970.1 MGP_CASTEiJ_G0031486.1 mouse_genomes_project 7 77474400 77637776 - MGP_CASTEiJ_P0084970 Cemip protein_coding protein_coding MGP_CASTEiJ_T0084971.1 MGP_CASTEiJ_G0031486.1 mouse_genomes_project 7 77476321 77486082 - Cemip protein_coding retained_intron MGP_CASTEiJ_T0084972.1 MGP_CASTEiJ_G0031486.1 mouse_genomes_project 7 77488310 77637776 - Cemip protein_coding retained_intron MGP_CASTEiJ_T0084973.1 MGP_CASTEiJ_G0031486.1 mouse_genomes_project 7 77492236 77519600 - Cemip protein_coding retained_intron MGP_CASTEiJ_T0084974.1 MGP_CASTEiJ_G0031486.1 mouse_genomes_project 7 77502549 77637776 - Cemip protein_coding retained_intron MGP_CASTEiJ_T0085011.1 MGP_CASTEiJ_G0031514.1 mouse_genomes_project 7 80855142 81083527 + MGP_CASTEiJ_P0085011 protein_coding protein_coding MGP_CASTEiJ_T0086647.1 MGP_CASTEiJ_G0032017.1 mouse_genomes_project 7 122434044 122436977 - MGP_CASTEiJ_P0086647 Sult1a1 protein_coding protein_coding MGP_CASTEiJ_T0008703.1 MGP_CASTEiJ_G0007041.1 mouse_genomes_project 7 72035756 72036033 + 1700011D18Rik lincRNA lincRNA MGP_CASTEiJ_T0015113.1 MGP_CASTEiJ_G0013276.1 mouse_genomes_project 7 1082890 1083763 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002163.1 MGP_CASTEiJ_G0002083.1 mouse_genomes_project 7 48741213 48742954 - TEC TEC MGP_CASTEiJ_T0010604.1 MGP_CASTEiJ_G0008792.1 mouse_genomes_project 7 104486400 104486519 + miRNA miRNA MGP_CASTEiJ_T0087031.1 MGP_CASTEiJ_G0032089.1 mouse_genomes_project 7 123763604 123766219 - MGP_CASTEiJ_P0087031 protein_coding protein_coding MGP_CASTEiJ_T0087032.1 MGP_CASTEiJ_G0032089.1 mouse_genomes_project 7 123763606 123765853 - MGP_CASTEiJ_P0087032 protein_coding protein_coding MGP_CASTEiJ_T0087033.1 MGP_CASTEiJ_G0032089.1 mouse_genomes_project 7 123763778 123765911 - MGP_CASTEiJ_P0087033 protein_coding protein_coding MGP_CASTEiJ_T0002252.1 MGP_CASTEiJ_G0002171.1 mouse_genomes_project 7 141959116 141960460 + TEC TEC MGP_CASTEiJ_T0085904.1 MGP_CASTEiJ_G0031856.1 mouse_genomes_project 7 103762378 103763311 - MGP_CASTEiJ_P0085904 Olfr514 protein_coding protein_coding MGP_CASTEiJ_T0085577.1 MGP_CASTEiJ_G0031646.1 mouse_genomes_project 7 97416153 97417107 + MGP_CASTEiJ_P0085577 Olfr554 protein_coding protein_coding MGP_CASTEiJ_T0085607.1 MGP_CASTEiJ_G0031674.1 mouse_genomes_project 7 97953389 97954334 - MGP_CASTEiJ_P0085607 Olfr591 protein_coding protein_coding MGP_CASTEiJ_T0010549.1 MGP_CASTEiJ_G0008737.1 mouse_genomes_project 7 21649997 21650056 - Mir1963 miRNA miRNA MGP_CASTEiJ_T0008615.1 MGP_CASTEiJ_G0006975.1 mouse_genomes_project 7 28608451 28611819 - Gm28076 lincRNA lincRNA MGP_CASTEiJ_T0002143.1 MGP_CASTEiJ_G0002063.1 mouse_genomes_project 7 28848005 28849206 - TEC TEC MGP_CASTEiJ_T0102522.1 MGP_CASTEiJ_G0039246.1 mouse_genomes_project 7 36284475 36305504 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002187.1 MGP_CASTEiJ_G0002106.1 mouse_genomes_project 7 66988320 66990487 - TEC TEC MGP_CASTEiJ_T0086224.1 MGP_CASTEiJ_G0031927.1 mouse_genomes_project 7 114028188 114122544 + MGP_CASTEiJ_P0086224 Tmc5 protein_coding protein_coding MGP_CASTEiJ_T0086225.1 MGP_CASTEiJ_G0031927.1 mouse_genomes_project 7 114028188 114122545 + MGP_CASTEiJ_P0086225 Tmc5 protein_coding protein_coding MGP_CASTEiJ_T0086226.1 MGP_CASTEiJ_G0031927.1 mouse_genomes_project 7 114032608 114122545 + MGP_CASTEiJ_P0086226 Tmc5 protein_coding protein_coding MGP_CASTEiJ_T0086227.1 MGP_CASTEiJ_G0031927.1 mouse_genomes_project 7 114072386 114122545 + MGP_CASTEiJ_P0086227 Tmc5 protein_coding protein_coding MGP_CASTEiJ_T0085762.1 MGP_CASTEiJ_G0031781.1 mouse_genomes_project 7 100706470 100716014 - MGP_CASTEiJ_P0085762 Hpx protein_coding protein_coding MGP_CASTEiJ_T0085897.1 MGP_CASTEiJ_G0031849.1 mouse_genomes_project 7 103517460 103518468 + MGP_CASTEiJ_P0085897 Olfr506 protein_coding protein_coding MGP_CASTEiJ_T0084184.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 41722526 41779721 + Nav2 protein_coding processed_transcript MGP_CASTEiJ_T0084185.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 41775049 41784791 + Nav2 protein_coding retained_intron MGP_CASTEiJ_T0084186.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 41775073 42476982 + MGP_CASTEiJ_P0084186 Nav2 protein_coding protein_coding MGP_CASTEiJ_T0084187.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 42074297 42249364 + Nav2 protein_coding retained_intron MGP_CASTEiJ_T0084188.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 42074297 42482462 + MGP_CASTEiJ_P0084188 Nav2 protein_coding protein_coding MGP_CASTEiJ_T0084189.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 42074951 42482465 + MGP_CASTEiJ_P0084189 Nav2 protein_coding protein_coding MGP_CASTEiJ_T0084190.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 42074952 42343844 + MGP_CASTEiJ_P0084190 Nav2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084191.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 42075075 42482466 + MGP_CASTEiJ_P0084191 Nav2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084192.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 42135747 42251160 + Nav2 protein_coding retained_intron MGP_CASTEiJ_T0084193.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 42135864 42278713 + Nav2 protein_coding processed_transcript MGP_CASTEiJ_T0084194.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 42135866 42137486 + Nav2 protein_coding retained_intron MGP_CASTEiJ_T0084195.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 42200388 42299992 + Nav2 protein_coding retained_intron MGP_CASTEiJ_T0084196.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 42294406 42309299 + Nav2 protein_coding processed_transcript MGP_CASTEiJ_T0084197.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 42406584 42417597 + MGP_CASTEiJ_P0084197 Nav2 protein_coding protein_coding MGP_CASTEiJ_T0084198.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 42412333 42417339 + Nav2 protein_coding retained_intron MGP_CASTEiJ_T0084199.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 42437373 42438814 + Nav2 protein_coding retained_intron MGP_CASTEiJ_T0084200.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 42450038 42451643 + Nav2 protein_coding retained_intron MGP_CASTEiJ_T0084201.1 MGP_CASTEiJ_G0031329.1 mouse_genomes_project 7 42452251 42456146 + Nav2 protein_coding retained_intron MGP_CASTEiJ_T0086698.1 MGP_CASTEiJ_G0032026.1 mouse_genomes_project 7 122569942 122576386 - MGP_CASTEiJ_P0086698 Ppp4c protein_coding unknown_likely_coding MGP_CASTEiJ_T0086699.1 MGP_CASTEiJ_G0032026.1 mouse_genomes_project 7 122569950 122576548 - MGP_CASTEiJ_P0086699 Ppp4c protein_coding protein_coding MGP_CASTEiJ_T0086700.1 MGP_CASTEiJ_G0032026.1 mouse_genomes_project 7 122569952 122576392 - MGP_CASTEiJ_P0086700 Ppp4c protein_coding protein_coding MGP_CASTEiJ_T0086701.1 MGP_CASTEiJ_G0032026.1 mouse_genomes_project 7 122570244 122572497 - MGP_CASTEiJ_P0086701 Ppp4c protein_coding protein_coding MGP_CASTEiJ_T0086702.1 MGP_CASTEiJ_G0032026.1 mouse_genomes_project 7 122570314 122571424 - MGP_CASTEiJ_P0086702 Ppp4c protein_coding protein_coding MGP_CASTEiJ_T0086703.1 MGP_CASTEiJ_G0032026.1 mouse_genomes_project 7 122570374 122576545 - MGP_CASTEiJ_P0086703 Ppp4c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086704.1 MGP_CASTEiJ_G0032026.1 mouse_genomes_project 7 122571304 122573130 - MGP_CASTEiJ_P0086704 Ppp4c protein_coding protein_coding MGP_CASTEiJ_T0086705.1 MGP_CASTEiJ_G0032026.1 mouse_genomes_project 7 122571552 122576199 - MGP_CASTEiJ_P0086705 Ppp4c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086706.1 MGP_CASTEiJ_G0032026.1 mouse_genomes_project 7 122571655 122573103 - Ppp4c protein_coding retained_intron MGP_CASTEiJ_T0086707.1 MGP_CASTEiJ_G0032026.1 mouse_genomes_project 7 122571748 122576518 - Ppp4c protein_coding retained_intron MGP_CASTEiJ_T0086708.1 MGP_CASTEiJ_G0032026.1 mouse_genomes_project 7 122574598 122576548 - Ppp4c protein_coding retained_intron MGP_CASTEiJ_T0086709.1 MGP_CASTEiJ_G0032026.1 mouse_genomes_project 7 122574622 122576534 - Ppp4c protein_coding retained_intron MGP_CASTEiJ_T0015276.1 MGP_CASTEiJ_G0013439.1 mouse_genomes_project 7 92905246 92905485 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0087514.1 MGP_CASTEiJ_G0032193.1 mouse_genomes_project 7 137041797 137055044 + MGP_CASTEiJ_P0087514 Mtg1 protein_coding protein_coding MGP_CASTEiJ_T0087515.1 MGP_CASTEiJ_G0032193.1 mouse_genomes_project 7 137041882 137046398 + Mtg1 protein_coding retained_intron MGP_CASTEiJ_T0087516.1 MGP_CASTEiJ_G0032193.1 mouse_genomes_project 7 137041896 137051794 + Mtg1 protein_coding retained_intron MGP_CASTEiJ_T0087517.1 MGP_CASTEiJ_G0032193.1 mouse_genomes_project 7 137042196 137042630 + Mtg1 protein_coding processed_transcript MGP_CASTEiJ_T0087518.1 MGP_CASTEiJ_G0032193.1 mouse_genomes_project 7 137044447 137051482 + Mtg1 protein_coding retained_intron MGP_CASTEiJ_T0087519.1 MGP_CASTEiJ_G0032193.1 mouse_genomes_project 7 137053216 137054705 + Mtg1 protein_coding processed_transcript MGP_CASTEiJ_T0086428.1 MGP_CASTEiJ_G0031980.1 mouse_genomes_project 7 117813658 117832235 - MGP_CASTEiJ_P0086428 Ern2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086429.1 MGP_CASTEiJ_G0031980.1 mouse_genomes_project 7 117813709 117832232 - MGP_CASTEiJ_P0086429 Ern2 protein_coding protein_coding MGP_CASTEiJ_T0086430.1 MGP_CASTEiJ_G0031980.1 mouse_genomes_project 7 117813827 117830006 - MGP_CASTEiJ_P0086430 Ern2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0005088.1 MGP_CASTEiJ_G0004337.1 mouse_genomes_project 7 67469894 67488995 + Gm7580 antisense antisense MGP_CASTEiJ_T0084324.1 MGP_CASTEiJ_G0031356.1 mouse_genomes_project 7 52288250 52323664 - MGP_CASTEiJ_P0084324 Snurf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084325.1 MGP_CASTEiJ_G0031356.1 mouse_genomes_project 7 52288250 52323664 - MGP_CASTEiJ_P0084325 Snurf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084326.1 MGP_CASTEiJ_G0031356.1 mouse_genomes_project 7 52292730 52296656 - Snurf protein_coding processed_transcript MGP_CASTEiJ_T0084327.1 MGP_CASTEiJ_G0031356.1 mouse_genomes_project 7 52296489 52296915 - Snurf protein_coding processed_transcript MGP_CASTEiJ_T0083841.1 MGP_CASTEiJ_G0031232.1 mouse_genomes_project 7 37536478 37555870 + MGP_CASTEiJ_P0083841 Nosip protein_coding protein_coding MGP_CASTEiJ_T0083842.1 MGP_CASTEiJ_G0031232.1 mouse_genomes_project 7 37536478 37555870 + MGP_CASTEiJ_P0083842 Nosip protein_coding protein_coding MGP_CASTEiJ_T0008609.1 MGP_CASTEiJ_G0006969.1 mouse_genomes_project 7 26429496 26435919 - Gm45229 lincRNA lincRNA MGP_CASTEiJ_T0081919.1 MGP_CASTEiJ_G0030758.1 mouse_genomes_project 7 10996179 10997867 - MGP_CASTEiJ_P0081919 Inafm1 protein_coding protein_coding MGP_CASTEiJ_T0085457.1 MGP_CASTEiJ_G0031616.1 mouse_genomes_project 7 96551934 96558295 - MGP_CASTEiJ_P0085457 Folr2 protein_coding protein_coding MGP_CASTEiJ_T0010520.1 MGP_CASTEiJ_G0008708.1 mouse_genomes_project 7 109602 109658 - Mir290b miRNA miRNA MGP_CASTEiJ_T0010534.1 MGP_CASTEiJ_G0008722.1 mouse_genomes_project 7 6393767 6393843 - Gm23087 miRNA miRNA MGP_CASTEiJ_T0081435.1 MGP_CASTEiJ_G0030602.1 mouse_genomes_project 7 587613 590525 + MGP_CASTEiJ_P0081435 Rps9 protein_coding protein_coding MGP_CASTEiJ_T0081436.1 MGP_CASTEiJ_G0030602.1 mouse_genomes_project 7 587615 590525 + MGP_CASTEiJ_P0081436 Rps9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0081437.1 MGP_CASTEiJ_G0030602.1 mouse_genomes_project 7 587646 590518 + MGP_CASTEiJ_P0081437 Rps9 protein_coding protein_coding MGP_CASTEiJ_T0081438.1 MGP_CASTEiJ_G0030602.1 mouse_genomes_project 7 587649 588487 + Rps9 protein_coding retained_intron MGP_CASTEiJ_T0081439.1 MGP_CASTEiJ_G0030602.1 mouse_genomes_project 7 587650 588330 + MGP_CASTEiJ_P0081439 Rps9 protein_coding protein_coding MGP_CASTEiJ_T0081440.1 MGP_CASTEiJ_G0030602.1 mouse_genomes_project 7 587656 589052 + Rps9 protein_coding retained_intron MGP_CASTEiJ_T0081441.1 MGP_CASTEiJ_G0030602.1 mouse_genomes_project 7 587933 590004 + MGP_CASTEiJ_P0081441 Rps9 protein_coding protein_coding MGP_CASTEiJ_T0081442.1 MGP_CASTEiJ_G0030602.1 mouse_genomes_project 7 587972 590517 + MGP_CASTEiJ_P0081442 Rps9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081443.1 MGP_CASTEiJ_G0030602.1 mouse_genomes_project 7 589238 589851 + Rps9 protein_coding retained_intron MGP_CASTEiJ_T0015246.1 MGP_CASTEiJ_G0013409.1 mouse_genomes_project 7 72651707 72651915 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011350.1 MGP_CASTEiJ_G0009538.1 mouse_genomes_project 7 22948651 22949022 + Gm24757 misc_RNA misc_RNA MGP_CASTEiJ_T0081991.1 MGP_CASTEiJ_G0030774.1 mouse_genomes_project 7 11689049 11693466 + MGP_CASTEiJ_P0081991 Ptgir protein_coding protein_coding MGP_CASTEiJ_T0081992.1 MGP_CASTEiJ_G0030774.1 mouse_genomes_project 7 11689073 11693461 + MGP_CASTEiJ_P0081992 Ptgir protein_coding protein_coding MGP_CASTEiJ_T0086800.1 MGP_CASTEiJ_G0032041.1 mouse_genomes_project 7 122810338 122812656 - MGP_CASTEiJ_P0086800 protein_coding protein_coding MGP_CASTEiJ_T0086803.1 MGP_CASTEiJ_G0032041.1 mouse_genomes_project 7 122810480 122812624 - MGP_CASTEiJ_P0086803 protein_coding protein_coding MGP_CASTEiJ_T0086804.1 MGP_CASTEiJ_G0032041.1 mouse_genomes_project 7 122810682 122811984 - MGP_CASTEiJ_P0086804 protein_coding protein_coding MGP_CASTEiJ_T0086805.1 MGP_CASTEiJ_G0032041.1 mouse_genomes_project 7 122810711 122812621 - MGP_CASTEiJ_P0086805 protein_coding protein_coding MGP_CASTEiJ_T0082936.1 MGP_CASTEiJ_G0031022.1 mouse_genomes_project 7 22093878 22115083 + MGP_CASTEiJ_P0082936 protein_coding protein_coding MGP_CASTEiJ_T0082937.1 MGP_CASTEiJ_G0031022.1 mouse_genomes_project 7 22113741 22115081 + MGP_CASTEiJ_P0082937 protein_coding protein_coding MGP_CASTEiJ_T0102572.1 MGP_CASTEiJ_G0039296.1 mouse_genomes_project 7 80228868 80229741 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008805.1 MGP_CASTEiJ_G0007101.1 mouse_genomes_project 7 124515641 124518076 - Gm45121 lincRNA lincRNA MGP_CASTEiJ_T0083142.1 MGP_CASTEiJ_G0031069.1 mouse_genomes_project 7 23237881 23241142 - MGP_CASTEiJ_P0083142 Zbtb32 protein_coding protein_coding MGP_CASTEiJ_T0083143.1 MGP_CASTEiJ_G0031069.1 mouse_genomes_project 7 23237883 23247122 - MGP_CASTEiJ_P0083143 Zbtb32 protein_coding protein_coding MGP_CASTEiJ_T0083144.1 MGP_CASTEiJ_G0031069.1 mouse_genomes_project 7 23246184 23247162 - Zbtb32 protein_coding processed_transcript MGP_CASTEiJ_T0085712.1 MGP_CASTEiJ_G0031758.1 mouse_genomes_project 7 99983418 99984357 - MGP_CASTEiJ_P0085712 Olfr670 protein_coding protein_coding MGP_CASTEiJ_T0087978.1 MGP_CASTEiJ_G0032300.1 mouse_genomes_project 7 140837558 140843375 - Osbpl5 protein_coding retained_intron MGP_CASTEiJ_T0087979.1 MGP_CASTEiJ_G0032300.1 mouse_genomes_project 7 140837558 140889075 - MGP_CASTEiJ_P0087979 Osbpl5 protein_coding protein_coding MGP_CASTEiJ_T0087980.1 MGP_CASTEiJ_G0032300.1 mouse_genomes_project 7 140837558 140890719 - MGP_CASTEiJ_P0087980 Osbpl5 protein_coding protein_coding MGP_CASTEiJ_T0087981.1 MGP_CASTEiJ_G0032300.1 mouse_genomes_project 7 140843077 140843900 - Osbpl5 protein_coding retained_intron MGP_CASTEiJ_T0087982.1 MGP_CASTEiJ_G0032300.1 mouse_genomes_project 7 140851666 140853728 - Osbpl5 protein_coding retained_intron MGP_CASTEiJ_T0087983.1 MGP_CASTEiJ_G0032300.1 mouse_genomes_project 7 140857669 140905812 - MGP_CASTEiJ_P0087983 Osbpl5 protein_coding protein_coding MGP_CASTEiJ_T0087984.1 MGP_CASTEiJ_G0032300.1 mouse_genomes_project 7 140862124 140889033 - Osbpl5 protein_coding processed_transcript MGP_CASTEiJ_T0084851.1 MGP_CASTEiJ_G0031454.1 mouse_genomes_project 7 74278969 74324026 - Sec11a protein_coding processed_transcript MGP_CASTEiJ_T0084852.1 MGP_CASTEiJ_G0031454.1 mouse_genomes_project 7 74281783 74323994 - MGP_CASTEiJ_P0084852 Sec11a protein_coding protein_coding MGP_CASTEiJ_T0084853.1 MGP_CASTEiJ_G0031454.1 mouse_genomes_project 7 74289450 74302640 - Sec11a protein_coding processed_transcript MGP_CASTEiJ_T0084854.1 MGP_CASTEiJ_G0031454.1 mouse_genomes_project 7 74289450 74300527 - Sec11a protein_coding retained_intron MGP_CASTEiJ_T0084855.1 MGP_CASTEiJ_G0031454.1 mouse_genomes_project 7 74289450 74324261 - MGP_CASTEiJ_P0084855 Sec11a protein_coding protein_coding MGP_CASTEiJ_T0084856.1 MGP_CASTEiJ_G0031454.1 mouse_genomes_project 7 74289639 74290402 - Sec11a protein_coding retained_intron MGP_CASTEiJ_T0084857.1 MGP_CASTEiJ_G0031454.1 mouse_genomes_project 7 74289734 74324261 - MGP_CASTEiJ_P0084857 Sec11a protein_coding protein_coding MGP_CASTEiJ_T0084858.1 MGP_CASTEiJ_G0031454.1 mouse_genomes_project 7 74289836 74323992 - Sec11a protein_coding processed_transcript MGP_CASTEiJ_T0084859.1 MGP_CASTEiJ_G0031454.1 mouse_genomes_project 7 74290162 74324261 - MGP_CASTEiJ_P0084859 Sec11a protein_coding protein_coding MGP_CASTEiJ_T0084860.1 MGP_CASTEiJ_G0031454.1 mouse_genomes_project 7 74294957 74324223 - Sec11a protein_coding retained_intron MGP_CASTEiJ_T0082889.1 MGP_CASTEiJ_G0031013.1 mouse_genomes_project 7 21742493 21746213 + MGP_CASTEiJ_P0082889 Ggn protein_coding protein_coding MGP_CASTEiJ_T0082890.1 MGP_CASTEiJ_G0031013.1 mouse_genomes_project 7 21742663 21746192 + MGP_CASTEiJ_P0082890 Ggn protein_coding protein_coding MGP_CASTEiJ_T0086058.1 MGP_CASTEiJ_G0031896.1 mouse_genomes_project 7 107565894 107728783 + MGP_CASTEiJ_P0086058 Parva protein_coding protein_coding MGP_CASTEiJ_T0086059.1 MGP_CASTEiJ_G0031896.1 mouse_genomes_project 7 107566111 107730840 + MGP_CASTEiJ_P0086059 Parva protein_coding protein_coding MGP_CASTEiJ_T0086060.1 MGP_CASTEiJ_G0031896.1 mouse_genomes_project 7 107566310 107689086 + MGP_CASTEiJ_P0086060 Parva protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086061.1 MGP_CASTEiJ_G0031896.1 mouse_genomes_project 7 107637318 107684052 + Parva protein_coding processed_transcript MGP_CASTEiJ_T0086062.1 MGP_CASTEiJ_G0031896.1 mouse_genomes_project 7 107655828 107728124 + MGP_CASTEiJ_P0086062 Parva protein_coding protein_coding MGP_CASTEiJ_T0086063.1 MGP_CASTEiJ_G0031896.1 mouse_genomes_project 7 107707104 107718866 + Parva protein_coding processed_transcript MGP_CASTEiJ_T0082758.1 MGP_CASTEiJ_G0030985.1 mouse_genomes_project 7 20870009 20876576 - MGP_CASTEiJ_P0082758 Med29 protein_coding protein_coding MGP_CASTEiJ_T0081366.1 MGP_CASTEiJ_G0030589.1 mouse_genomes_project 7 240725 278861 + MGP_CASTEiJ_P0081366 Cacng7 protein_coding protein_coding MGP_CASTEiJ_T0081367.1 MGP_CASTEiJ_G0030589.1 mouse_genomes_project 7 245951 276495 + Cacng7 protein_coding retained_intron MGP_CASTEiJ_T0087914.1 MGP_CASTEiJ_G0032286.1 mouse_genomes_project 7 139979420 139986663 - MGP_CASTEiJ_P0087914 Th protein_coding protein_coding MGP_CASTEiJ_T0087915.1 MGP_CASTEiJ_G0032286.1 mouse_genomes_project 7 139979420 140020454 - MGP_CASTEiJ_P0087915 Th protein_coding protein_coding MGP_CASTEiJ_T0087916.1 MGP_CASTEiJ_G0032286.1 mouse_genomes_project 7 139979635 139986610 - MGP_CASTEiJ_P0087916 Th protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087917.1 MGP_CASTEiJ_G0032286.1 mouse_genomes_project 7 139981066 139983260 - MGP_CASTEiJ_P0087917 Th protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087918.1 MGP_CASTEiJ_G0032286.1 mouse_genomes_project 7 139981094 139986615 - MGP_CASTEiJ_P0087918 Th protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087919.1 MGP_CASTEiJ_G0032286.1 mouse_genomes_project 7 139983248 140020446 - MGP_CASTEiJ_P0087919 Th protein_coding protein_coding MGP_CASTEiJ_T0082696.1 MGP_CASTEiJ_G0030963.1 mouse_genomes_project 7 20137784 20141651 + MGP_CASTEiJ_P0082696 Zfp607a protein_coding protein_coding MGP_CASTEiJ_T0081620.1 MGP_CASTEiJ_G0030637.1 mouse_genomes_project 7 1866937 1886793 + MGP_CASTEiJ_P0081620 Ssc5d protein_coding protein_coding MGP_CASTEiJ_T0008656.1 MGP_CASTEiJ_G0007005.1 mouse_genomes_project 7 58116812 58151219 + BC046251 lincRNA lincRNA MGP_CASTEiJ_T0086028.1 MGP_CASTEiJ_G0031890.1 mouse_genomes_project 7 106135497 106147259 - MGP_CASTEiJ_P0086028 Eif4g2 protein_coding protein_coding MGP_CASTEiJ_T0086029.1 MGP_CASTEiJ_G0031890.1 mouse_genomes_project 7 106137301 106138084 - Eif4g2 protein_coding processed_transcript MGP_CASTEiJ_T0086030.1 MGP_CASTEiJ_G0031890.1 mouse_genomes_project 7 106137524 106139194 - Eif4g2 protein_coding retained_intron MGP_CASTEiJ_T0086031.1 MGP_CASTEiJ_G0031890.1 mouse_genomes_project 7 106138332 106139182 - MGP_CASTEiJ_P0086031 Eif4g2 protein_coding protein_coding MGP_CASTEiJ_T0086032.1 MGP_CASTEiJ_G0031890.1 mouse_genomes_project 7 106139070 106139632 - Eif4g2 protein_coding retained_intron MGP_CASTEiJ_T0086033.1 MGP_CASTEiJ_G0031890.1 mouse_genomes_project 7 106139805 106140318 - Eif4g2 protein_coding retained_intron MGP_CASTEiJ_T0086034.1 MGP_CASTEiJ_G0031890.1 mouse_genomes_project 7 106140144 106141143 - Eif4g2 protein_coding processed_transcript MGP_CASTEiJ_T0086035.1 MGP_CASTEiJ_G0031890.1 mouse_genomes_project 7 106141456 106142686 - Eif4g2 protein_coding retained_intron MGP_CASTEiJ_T0086036.1 MGP_CASTEiJ_G0031890.1 mouse_genomes_project 7 106142884 106144303 - Eif4g2 protein_coding retained_intron MGP_CASTEiJ_T0086037.1 MGP_CASTEiJ_G0031890.1 mouse_genomes_project 7 106143356 106147959 - MGP_CASTEiJ_P0086037 Eif4g2 protein_coding protein_coding MGP_CASTEiJ_T0086038.1 MGP_CASTEiJ_G0031890.1 mouse_genomes_project 7 106144276 106147135 - MGP_CASTEiJ_P0086038 Eif4g2 protein_coding protein_coding MGP_CASTEiJ_T0086039.1 MGP_CASTEiJ_G0031890.1 mouse_genomes_project 7 106145360 106147767 - Eif4g2 protein_coding retained_intron MGP_CASTEiJ_T0086040.1 MGP_CASTEiJ_G0031890.1 mouse_genomes_project 7 106145855 106146793 - MGP_CASTEiJ_P0086040 Eif4g2 protein_coding protein_coding MGP_CASTEiJ_T0083910.1 MGP_CASTEiJ_G0031252.1 mouse_genomes_project 7 37886929 37910487 - MGP_CASTEiJ_P0083910 Snrnp70 protein_coding protein_coding MGP_CASTEiJ_T0083911.1 MGP_CASTEiJ_G0031252.1 mouse_genomes_project 7 37886931 37910582 - MGP_CASTEiJ_P0083911 Snrnp70 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083912.1 MGP_CASTEiJ_G0031252.1 mouse_genomes_project 7 37886935 37896690 - MGP_CASTEiJ_P0083912 Snrnp70 protein_coding protein_coding MGP_CASTEiJ_T0083913.1 MGP_CASTEiJ_G0031252.1 mouse_genomes_project 7 37886938 37910403 - Snrnp70 protein_coding retained_intron MGP_CASTEiJ_T0083914.1 MGP_CASTEiJ_G0031252.1 mouse_genomes_project 7 37886939 37910437 - Snrnp70 protein_coding retained_intron MGP_CASTEiJ_T0083915.1 MGP_CASTEiJ_G0031252.1 mouse_genomes_project 7 37887622 37907070 - MGP_CASTEiJ_P0083915 Snrnp70 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083916.1 MGP_CASTEiJ_G0031252.1 mouse_genomes_project 7 37894157 37897081 - Snrnp70 protein_coding retained_intron MGP_CASTEiJ_T0083917.1 MGP_CASTEiJ_G0031252.1 mouse_genomes_project 7 37896344 37909555 - Snrnp70 protein_coding retained_intron MGP_CASTEiJ_T0083918.1 MGP_CASTEiJ_G0031252.1 mouse_genomes_project 7 37896512 37902519 - Snrnp70 protein_coding retained_intron MGP_CASTEiJ_T0083919.1 MGP_CASTEiJ_G0031252.1 mouse_genomes_project 7 37896562 37909920 - MGP_CASTEiJ_P0083919 Snrnp70 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083920.1 MGP_CASTEiJ_G0031252.1 mouse_genomes_project 7 37896577 37909942 - MGP_CASTEiJ_P0083920 Snrnp70 protein_coding protein_coding MGP_CASTEiJ_T0083921.1 MGP_CASTEiJ_G0031252.1 mouse_genomes_project 7 37901694 37909475 - Snrnp70 protein_coding retained_intron MGP_CASTEiJ_T0083922.1 MGP_CASTEiJ_G0031252.1 mouse_genomes_project 7 37902141 37910454 - MGP_CASTEiJ_P0083922 Snrnp70 protein_coding protein_coding MGP_CASTEiJ_T0083923.1 MGP_CASTEiJ_G0031252.1 mouse_genomes_project 7 37902185 37907533 - Snrnp70 protein_coding processed_transcript MGP_CASTEiJ_T0083924.1 MGP_CASTEiJ_G0031252.1 mouse_genomes_project 7 37905737 37907638 - Snrnp70 protein_coding retained_intron MGP_CASTEiJ_T0083925.1 MGP_CASTEiJ_G0031252.1 mouse_genomes_project 7 37906572 37910302 - Snrnp70 protein_coding retained_intron MGP_CASTEiJ_T0015253.1 MGP_CASTEiJ_G0013416.1 mouse_genomes_project 7 76481470 76481820 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017635.1 MGP_CASTEiJ_G0014992.1 mouse_genomes_project 7 66537555 66557930 - 1810026B05Rik processed_transcript lincRNA MGP_CASTEiJ_T0017636.1 MGP_CASTEiJ_G0014992.1 mouse_genomes_project 7 66542405 66557779 - 1810026B05Rik processed_transcript lincRNA MGP_CASTEiJ_T0017637.1 MGP_CASTEiJ_G0014992.1 mouse_genomes_project 7 66542406 66557682 - 1810026B05Rik processed_transcript lincRNA MGP_CASTEiJ_T0017638.1 MGP_CASTEiJ_G0014992.1 mouse_genomes_project 7 66542411 66545251 - 1810026B05Rik processed_transcript retained_intron MGP_CASTEiJ_T0017639.1 MGP_CASTEiJ_G0014992.1 mouse_genomes_project 7 66542612 66555451 - 1810026B05Rik processed_transcript lincRNA MGP_CASTEiJ_T0017640.1 MGP_CASTEiJ_G0014992.1 mouse_genomes_project 7 66542634 66557508 - 1810026B05Rik processed_transcript lincRNA MGP_CASTEiJ_T0017641.1 MGP_CASTEiJ_G0014992.1 mouse_genomes_project 7 66542676 66557783 - 1810026B05Rik processed_transcript lincRNA MGP_CASTEiJ_T0017642.1 MGP_CASTEiJ_G0014992.1 mouse_genomes_project 7 66554680 66557921 - 1810026B05Rik processed_transcript retained_intron MGP_CASTEiJ_T0082947.1 MGP_CASTEiJ_G0031027.1 mouse_genomes_project 7 22453490 22468144 + MGP_CASTEiJ_P0082947 Zfp420 protein_coding protein_coding MGP_CASTEiJ_T0082948.1 MGP_CASTEiJ_G0031027.1 mouse_genomes_project 7 22453515 22455119 + Zfp420 protein_coding retained_intron MGP_CASTEiJ_T0082949.1 MGP_CASTEiJ_G0031027.1 mouse_genomes_project 7 22453522 22468923 + Zfp420 protein_coding processed_transcript MGP_CASTEiJ_T0082950.1 MGP_CASTEiJ_G0031027.1 mouse_genomes_project 7 22453552 22468465 + MGP_CASTEiJ_P0082950 Zfp420 protein_coding protein_coding MGP_CASTEiJ_T0082951.1 MGP_CASTEiJ_G0031027.1 mouse_genomes_project 7 22464187 22466175 + Zfp420 protein_coding retained_intron MGP_CASTEiJ_T0085379.1 MGP_CASTEiJ_G0031603.1 mouse_genomes_project 7 95347811 95479144 + MGP_CASTEiJ_P0085379 Fam168a protein_coding unknown_likely_coding MGP_CASTEiJ_T0085380.1 MGP_CASTEiJ_G0031603.1 mouse_genomes_project 7 95423183 95481445 + MGP_CASTEiJ_P0085380 Fam168a protein_coding protein_coding MGP_CASTEiJ_T0008600.1 MGP_CASTEiJ_G0006961.1 mouse_genomes_project 7 25436712 25442698 + Gm26762 lincRNA lincRNA MGP_CASTEiJ_T0002209.1 MGP_CASTEiJ_G0002128.1 mouse_genomes_project 7 73319438 73321463 + TEC TEC MGP_CASTEiJ_T0082282.1 MGP_CASTEiJ_G0030866.1 mouse_genomes_project 7 16411841 16422230 + MGP_CASTEiJ_P0082282 Zfp108 protein_coding protein_coding MGP_CASTEiJ_T0082283.1 MGP_CASTEiJ_G0030866.1 mouse_genomes_project 7 16412087 16422300 + MGP_CASTEiJ_P0082283 Zfp108 protein_coding protein_coding MGP_CASTEiJ_T0082284.1 MGP_CASTEiJ_G0030866.1 mouse_genomes_project 7 16415415 16422302 + MGP_CASTEiJ_P0082284 Zfp108 protein_coding protein_coding MGP_CASTEiJ_T0082727.1 MGP_CASTEiJ_G0030976.1 mouse_genomes_project 7 20736138 20737540 + MGP_CASTEiJ_P0082727 Eid2 protein_coding protein_coding MGP_CASTEiJ_T0086986.1 MGP_CASTEiJ_G0032080.1 mouse_genomes_project 7 123640263 123665509 + MGP_CASTEiJ_P0086986 Setd1a protein_coding protein_coding MGP_CASTEiJ_T0086987.1 MGP_CASTEiJ_G0032080.1 mouse_genomes_project 7 123640741 123648085 + MGP_CASTEiJ_P0086987 Setd1a protein_coding protein_coding MGP_CASTEiJ_T0086988.1 MGP_CASTEiJ_G0032080.1 mouse_genomes_project 7 123640981 123647712 + MGP_CASTEiJ_P0086988 Setd1a protein_coding protein_coding MGP_CASTEiJ_T0086989.1 MGP_CASTEiJ_G0032080.1 mouse_genomes_project 7 123640981 123665502 + MGP_CASTEiJ_P0086989 Setd1a protein_coding protein_coding MGP_CASTEiJ_T0086990.1 MGP_CASTEiJ_G0032080.1 mouse_genomes_project 7 123641287 123642158 + MGP_CASTEiJ_P0086990 Setd1a protein_coding protein_coding MGP_CASTEiJ_T0086991.1 MGP_CASTEiJ_G0032080.1 mouse_genomes_project 7 123642169 123645495 + Setd1a protein_coding processed_transcript MGP_CASTEiJ_T0085004.1 MGP_CASTEiJ_G0031509.1 mouse_genomes_project 7 80713643 80714654 + MGP_CASTEiJ_P0085004 Olfr293 protein_coding protein_coding MGP_CASTEiJ_T0082488.1 MGP_CASTEiJ_G0030914.1 mouse_genomes_project 7 17915534 17916806 - MGP_CASTEiJ_P0082488 Erich4 protein_coding protein_coding MGP_CASTEiJ_T0081606.1 MGP_CASTEiJ_G0030631.1 mouse_genomes_project 7 1719478 1739922 - MGP_CASTEiJ_P0081606 Ube2s protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081607.1 MGP_CASTEiJ_G0030631.1 mouse_genomes_project 7 1733597 1738694 - Ube2s protein_coding retained_intron MGP_CASTEiJ_T0081608.1 MGP_CASTEiJ_G0030631.1 mouse_genomes_project 7 1734577 1740161 - MGP_CASTEiJ_P0081608 Ube2s protein_coding protein_coding MGP_CASTEiJ_T0081609.1 MGP_CASTEiJ_G0030631.1 mouse_genomes_project 7 1734987 1739695 - MGP_CASTEiJ_P0081609 Ube2s protein_coding protein_coding MGP_CASTEiJ_T0081610.1 MGP_CASTEiJ_G0030631.1 mouse_genomes_project 7 1738020 1739477 - MGP_CASTEiJ_P0081610 Ube2s protein_coding protein_coding MGP_CASTEiJ_T0082192.1 MGP_CASTEiJ_G0030834.1 mouse_genomes_project 7 14458413 14497004 - MGP_CASTEiJ_P0082192 Clptm1 protein_coding protein_coding MGP_CASTEiJ_T0085716.1 MGP_CASTEiJ_G0031762.1 mouse_genomes_project 7 100114383 100115325 + MGP_CASTEiJ_P0085716 Olfr678 protein_coding protein_coding MGP_CASTEiJ_T0008621.1 MGP_CASTEiJ_G0006981.1 mouse_genomes_project 7 31125177 31134065 + Gm37494 lincRNA lincRNA MGP_CASTEiJ_T0008622.1 MGP_CASTEiJ_G0006981.1 mouse_genomes_project 7 31133232 31134479 + Gm37494 lincRNA lincRNA MGP_CASTEiJ_T0008623.1 MGP_CASTEiJ_G0006981.1 mouse_genomes_project 7 31133233 31162329 + Gm37494 lincRNA lincRNA MGP_CASTEiJ_T0008624.1 MGP_CASTEiJ_G0006981.1 mouse_genomes_project 7 31133257 31146741 + Gm37494 lincRNA lincRNA MGP_CASTEiJ_T0085601.1 MGP_CASTEiJ_G0031668.1 mouse_genomes_project 7 97832886 97833994 + MGP_CASTEiJ_P0085601 protein_coding protein_coding MGP_CASTEiJ_T0102466.1 MGP_CASTEiJ_G0039191.1 mouse_genomes_project 7 7522353 7522752 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0005028.1 MGP_CASTEiJ_G0004294.1 mouse_genomes_project 7 17514066 17515636 + 9130221H12Rik antisense antisense MGP_CASTEiJ_T0005029.1 MGP_CASTEiJ_G0004294.1 mouse_genomes_project 7 17514102 17515642 + 9130221H12Rik antisense antisense MGP_CASTEiJ_T0085688.1 MGP_CASTEiJ_G0031739.1 mouse_genomes_project 7 99357940 99408219 - MGP_CASTEiJ_P0085688 Trim30a protein_coding unknown_likely_coding MGP_CASTEiJ_T0085689.1 MGP_CASTEiJ_G0031739.1 mouse_genomes_project 7 99360296 99361573 - Trim30a protein_coding retained_intron MGP_CASTEiJ_T0085690.1 MGP_CASTEiJ_G0031739.1 mouse_genomes_project 7 99360321 99361267 - Trim30a protein_coding processed_transcript MGP_CASTEiJ_T0085691.1 MGP_CASTEiJ_G0031739.1 mouse_genomes_project 7 99360636 99361219 - Trim30a protein_coding retained_intron MGP_CASTEiJ_T0087009.1 MGP_CASTEiJ_G0032084.1 mouse_genomes_project 7 123690099 123713652 + Stx4a protein_coding processed_transcript MGP_CASTEiJ_T0087010.1 MGP_CASTEiJ_G0032084.1 mouse_genomes_project 7 123706885 123713652 + MGP_CASTEiJ_P0087010 Stx4a protein_coding protein_coding MGP_CASTEiJ_T0087011.1 MGP_CASTEiJ_G0032084.1 mouse_genomes_project 7 123707089 123713633 + MGP_CASTEiJ_P0087011 Stx4a protein_coding protein_coding MGP_CASTEiJ_T0087012.1 MGP_CASTEiJ_G0032084.1 mouse_genomes_project 7 123707091 123709068 + Stx4a protein_coding retained_intron MGP_CASTEiJ_T0087013.1 MGP_CASTEiJ_G0032084.1 mouse_genomes_project 7 123707099 123711742 + MGP_CASTEiJ_P0087013 Stx4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087014.1 MGP_CASTEiJ_G0032084.1 mouse_genomes_project 7 123707806 123711710 + Stx4a protein_coding retained_intron MGP_CASTEiJ_T0087015.1 MGP_CASTEiJ_G0032084.1 mouse_genomes_project 7 123708721 123713312 + Stx4a protein_coding retained_intron MGP_CASTEiJ_T0087016.1 MGP_CASTEiJ_G0032084.1 mouse_genomes_project 7 123710907 123713133 + Stx4a protein_coding retained_intron MGP_CASTEiJ_T0087017.1 MGP_CASTEiJ_G0032084.1 mouse_genomes_project 7 123713025 123713652 + Stx4a protein_coding retained_intron MGP_CASTEiJ_T0087476.1 MGP_CASTEiJ_G0032183.1 mouse_genomes_project 7 136866019 136873821 - 6430531B16Rik protein_coding retained_intron MGP_CASTEiJ_T0087477.1 MGP_CASTEiJ_G0032183.1 mouse_genomes_project 7 136866019 136873853 - MGP_CASTEiJ_P0087477 6430531B16Rik protein_coding protein_coding MGP_CASTEiJ_T0087478.1 MGP_CASTEiJ_G0032183.1 mouse_genomes_project 7 136870590 136873821 - MGP_CASTEiJ_P0087478 6430531B16Rik protein_coding protein_coding MGP_CASTEiJ_T0102477.1 MGP_CASTEiJ_G0039202.1 mouse_genomes_project 7 9597576 9598601 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0087341.1 MGP_CASTEiJ_G0032150.1 mouse_genomes_project 7 129959676 129982304 - Uros protein_coding retained_intron MGP_CASTEiJ_T0087342.1 MGP_CASTEiJ_G0032150.1 mouse_genomes_project 7 129959789 129982279 - MGP_CASTEiJ_P0087342 Uros protein_coding protein_coding MGP_CASTEiJ_T0087343.1 MGP_CASTEiJ_G0032150.1 mouse_genomes_project 7 129959789 129982168 - MGP_CASTEiJ_P0087343 Uros protein_coding protein_coding MGP_CASTEiJ_T0087344.1 MGP_CASTEiJ_G0032150.1 mouse_genomes_project 7 129959798 129982491 - MGP_CASTEiJ_P0087344 Uros protein_coding protein_coding MGP_CASTEiJ_T0087345.1 MGP_CASTEiJ_G0032150.1 mouse_genomes_project 7 129960389 129972116 - Uros protein_coding processed_transcript MGP_CASTEiJ_T0087346.1 MGP_CASTEiJ_G0032150.1 mouse_genomes_project 7 129965711 129982269 - MGP_CASTEiJ_P0087346 Uros protein_coding protein_coding MGP_CASTEiJ_T0087347.1 MGP_CASTEiJ_G0032150.1 mouse_genomes_project 7 129975844 129976623 - MGP_CASTEiJ_P0087347 Uros protein_coding protein_coding MGP_CASTEiJ_T0087348.1 MGP_CASTEiJ_G0032150.1 mouse_genomes_project 7 129975898 129982267 - MGP_CASTEiJ_P0087348 Uros protein_coding protein_coding MGP_CASTEiJ_T0087349.1 MGP_CASTEiJ_G0032150.1 mouse_genomes_project 7 129975900 129983281 - MGP_CASTEiJ_P0087349 Uros protein_coding protein_coding MGP_CASTEiJ_T0015197.1 MGP_CASTEiJ_G0013360.1 mouse_genomes_project 7 33445061 33446860 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101270.1 MGP_CASTEiJ_G0038183.1 mouse_genomes_project 7 107753999 107754129 - Gm24154 snoRNA snoRNA MGP_CASTEiJ_T0085723.1 MGP_CASTEiJ_G0031769.1 mouse_genomes_project 7 100412824 100413900 + MGP_CASTEiJ_P0085723 protein_coding protein_coding MGP_CASTEiJ_T0081804.1 MGP_CASTEiJ_G0030721.1 mouse_genomes_project 7 8169098 8173962 - MGP_CASTEiJ_P0081804 Chmp2a protein_coding protein_coding MGP_CASTEiJ_T0010572.1 MGP_CASTEiJ_G0008760.1 mouse_genomes_project 7 54228676 54228756 - Gm23490 miRNA miRNA MGP_CASTEiJ_T0085907.1 MGP_CASTEiJ_G0031859.1 mouse_genomes_project 7 103810220 103811222 - MGP_CASTEiJ_P0085907 Olfr518 protein_coding protein_coding MGP_CASTEiJ_T0102552.1 MGP_CASTEiJ_G0039276.1 mouse_genomes_project 7 78638003 78638527 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0017631.1 MGP_CASTEiJ_G0014991.1 mouse_genomes_project 7 63210297 63259857 + processed_transcript antisense MGP_CASTEiJ_T0017632.1 MGP_CASTEiJ_G0014991.1 mouse_genomes_project 7 63233347 63250045 + processed_transcript antisense MGP_CASTEiJ_T0017633.1 MGP_CASTEiJ_G0014991.1 mouse_genomes_project 7 63233347 63259861 + processed_transcript retained_intron MGP_CASTEiJ_T0017634.1 MGP_CASTEiJ_G0014991.1 mouse_genomes_project 7 63235139 63235677 + processed_transcript processed_transcript MGP_CASTEiJ_T0015222.1 MGP_CASTEiJ_G0013385.1 mouse_genomes_project 7 49025430 49026322 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0087034.1 MGP_CASTEiJ_G0032090.1 mouse_genomes_project 7 123775563 123781712 + MGP_CASTEiJ_P0087034 Bckdk protein_coding protein_coding MGP_CASTEiJ_T0087035.1 MGP_CASTEiJ_G0032090.1 mouse_genomes_project 7 123775584 123777446 + Bckdk protein_coding retained_intron MGP_CASTEiJ_T0087036.1 MGP_CASTEiJ_G0032090.1 mouse_genomes_project 7 123776121 123777655 + MGP_CASTEiJ_P0087036 Bckdk protein_coding protein_coding MGP_CASTEiJ_T0087037.1 MGP_CASTEiJ_G0032090.1 mouse_genomes_project 7 123776243 123780092 + MGP_CASTEiJ_P0087037 Bckdk protein_coding protein_coding MGP_CASTEiJ_T0087038.1 MGP_CASTEiJ_G0032090.1 mouse_genomes_project 7 123776243 123780092 + MGP_CASTEiJ_P0087038 Bckdk protein_coding protein_coding MGP_CASTEiJ_T0087039.1 MGP_CASTEiJ_G0032090.1 mouse_genomes_project 7 123776405 123777867 + MGP_CASTEiJ_P0087039 Bckdk protein_coding protein_coding MGP_CASTEiJ_T0087040.1 MGP_CASTEiJ_G0032090.1 mouse_genomes_project 7 123778723 123780084 + MGP_CASTEiJ_P0087040 Bckdk protein_coding protein_coding MGP_CASTEiJ_T0017658.1 MGP_CASTEiJ_G0015002.1 mouse_genomes_project 7 111378689 111387613 - 1700003G18Rik processed_transcript sense_overlapping MGP_CASTEiJ_T0017659.1 MGP_CASTEiJ_G0015002.1 mouse_genomes_project 7 111378828 111387560 - 1700003G18Rik processed_transcript sense_overlapping MGP_CASTEiJ_T0017660.1 MGP_CASTEiJ_G0015002.1 mouse_genomes_project 7 111386344 111387552 - 1700003G18Rik processed_transcript retained_intron MGP_CASTEiJ_T0008751.1 MGP_CASTEiJ_G0007068.1 mouse_genomes_project 7 102164029 102216232 + Platr28 lincRNA lincRNA MGP_CASTEiJ_T0085261.1 MGP_CASTEiJ_G0031574.1 mouse_genomes_project 7 93779177 93849228 + MGP_CASTEiJ_P0085261 Map6 protein_coding protein_coding MGP_CASTEiJ_T0085262.1 MGP_CASTEiJ_G0031574.1 mouse_genomes_project 7 93779177 93849228 + MGP_CASTEiJ_P0085262 Map6 protein_coding protein_coding MGP_CASTEiJ_T0085263.1 MGP_CASTEiJ_G0031574.1 mouse_genomes_project 7 93779219 93832410 + Map6 protein_coding retained_intron MGP_CASTEiJ_T0085264.1 MGP_CASTEiJ_G0031574.1 mouse_genomes_project 7 93780076 93849229 + MGP_CASTEiJ_P0085264 Map6 protein_coding protein_coding MGP_CASTEiJ_T0085265.1 MGP_CASTEiJ_G0031574.1 mouse_genomes_project 7 93833325 93834581 + Map6 protein_coding processed_transcript MGP_CASTEiJ_T0082566.1 MGP_CASTEiJ_G0030933.1 mouse_genomes_project 7 19044055 19059394 + MGP_CASTEiJ_P0082566 Cyp2b19 protein_coding protein_coding MGP_CASTEiJ_T0082567.1 MGP_CASTEiJ_G0030933.1 mouse_genomes_project 7 19044076 19052357 + Cyp2b19 protein_coding retained_intron MGP_CASTEiJ_T0082568.1 MGP_CASTEiJ_G0030933.1 mouse_genomes_project 7 19053243 19058152 + Cyp2b19 protein_coding retained_intron MGP_CASTEiJ_T0081700.1 MGP_CASTEiJ_G0030673.1 mouse_genomes_project 7 3428955 3429900 + MGP_CASTEiJ_P0081700 Olfr1336 protein_coding protein_coding MGP_CASTEiJ_T0005043.1 MGP_CASTEiJ_G0004304.1 mouse_genomes_project 7 23102211 23107036 - Nphs1os antisense antisense MGP_CASTEiJ_T0081999.1 MGP_CASTEiJ_G0030778.1 mouse_genomes_project 7 11784218 11788804 + MGP_CASTEiJ_P0081999 Ccdc8 protein_coding protein_coding MGP_CASTEiJ_T0083513.1 MGP_CASTEiJ_G0031141.1 mouse_genomes_project 7 29782948 29793383 - MGP_CASTEiJ_P0083513 Plekhf1 protein_coding protein_coding MGP_CASTEiJ_T0082661.1 MGP_CASTEiJ_G0030956.1 mouse_genomes_project 7 19916927 19924823 + MGP_CASTEiJ_P0082661 Hipk4 protein_coding protein_coding MGP_CASTEiJ_T0082662.1 MGP_CASTEiJ_G0030956.1 mouse_genomes_project 7 19920711 19924818 + MGP_CASTEiJ_P0082662 Hipk4 protein_coding protein_coding MGP_CASTEiJ_T0083463.1 MGP_CASTEiJ_G0031134.1 mouse_genomes_project 7 27055095 27134378 - MGP_CASTEiJ_P0083463 Dpy19l3 protein_coding protein_coding MGP_CASTEiJ_T0083464.1 MGP_CASTEiJ_G0031134.1 mouse_genomes_project 7 27062260 27082282 - MGP_CASTEiJ_P0083464 Dpy19l3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083465.1 MGP_CASTEiJ_G0031134.1 mouse_genomes_project 7 27081415 27082751 - Dpy19l3 protein_coding retained_intron MGP_CASTEiJ_T0083466.1 MGP_CASTEiJ_G0031134.1 mouse_genomes_project 7 27081821 27082837 - Dpy19l3 protein_coding retained_intron MGP_CASTEiJ_T0083467.1 MGP_CASTEiJ_G0031134.1 mouse_genomes_project 7 27090627 27107616 - MGP_CASTEiJ_P0083467 Dpy19l3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083468.1 MGP_CASTEiJ_G0031134.1 mouse_genomes_project 7 27092441 27101628 - Dpy19l3 protein_coding retained_intron MGP_CASTEiJ_T0083469.1 MGP_CASTEiJ_G0031134.1 mouse_genomes_project 7 27097258 27103411 - Dpy19l3 protein_coding processed_transcript MGP_CASTEiJ_T0083470.1 MGP_CASTEiJ_G0031134.1 mouse_genomes_project 7 27103425 27107660 - Dpy19l3 protein_coding retained_intron MGP_CASTEiJ_T0083471.1 MGP_CASTEiJ_G0031134.1 mouse_genomes_project 7 27107561 27134323 - Dpy19l3 protein_coding processed_transcript MGP_CASTEiJ_T0083472.1 MGP_CASTEiJ_G0031134.1 mouse_genomes_project 7 27131238 27134279 - Dpy19l3 protein_coding retained_intron MGP_CASTEiJ_T0005053.1 MGP_CASTEiJ_G0004313.1 mouse_genomes_project 7 23865112 23877461 + Gm10640 antisense antisense MGP_CASTEiJ_T0005054.1 MGP_CASTEiJ_G0004313.1 mouse_genomes_project 7 23876248 23884857 + Gm10640 antisense antisense MGP_CASTEiJ_T0085694.1 MGP_CASTEiJ_G0031741.1 mouse_genomes_project 7 99503648 99504590 + MGP_CASTEiJ_P0085694 Olfr651 protein_coding protein_coding MGP_CASTEiJ_T0083724.1 MGP_CASTEiJ_G0031203.1 mouse_genomes_project 7 36969313 36984979 - MGP_CASTEiJ_P0083724 Pold1 protein_coding protein_coding MGP_CASTEiJ_T0083725.1 MGP_CASTEiJ_G0031203.1 mouse_genomes_project 7 36969316 36970485 - Pold1 protein_coding retained_intron MGP_CASTEiJ_T0083726.1 MGP_CASTEiJ_G0031203.1 mouse_genomes_project 7 36969318 36984981 - Pold1 protein_coding retained_intron MGP_CASTEiJ_T0083727.1 MGP_CASTEiJ_G0031203.1 mouse_genomes_project 7 36969321 36971655 - Pold1 protein_coding retained_intron MGP_CASTEiJ_T0083728.1 MGP_CASTEiJ_G0031203.1 mouse_genomes_project 7 36969353 36984970 - MGP_CASTEiJ_P0083728 Pold1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083729.1 MGP_CASTEiJ_G0031203.1 mouse_genomes_project 7 36969847 36970761 - Pold1 protein_coding retained_intron MGP_CASTEiJ_T0083730.1 MGP_CASTEiJ_G0031203.1 mouse_genomes_project 7 36970462 36972517 - Pold1 protein_coding retained_intron MGP_CASTEiJ_T0083731.1 MGP_CASTEiJ_G0031203.1 mouse_genomes_project 7 36974081 36975011 - Pold1 protein_coding retained_intron MGP_CASTEiJ_T0083732.1 MGP_CASTEiJ_G0031203.1 mouse_genomes_project 7 36978694 36984865 - MGP_CASTEiJ_P0083732 Pold1 protein_coding protein_coding MGP_CASTEiJ_T0081722.1 MGP_CASTEiJ_G0030686.1 mouse_genomes_project 7 5706661 5707657 + MGP_CASTEiJ_P0081722 Vmn1r67 protein_coding protein_coding MGP_CASTEiJ_T0011346.1 MGP_CASTEiJ_G0009534.1 mouse_genomes_project 7 8467874 8468154 + Gm24909 misc_RNA misc_RNA MGP_CASTEiJ_T0082022.1 MGP_CASTEiJ_G0030786.1 mouse_genomes_project 7 12650171 12656632 + MGP_CASTEiJ_P0082022 Ceacam11 protein_coding protein_coding MGP_CASTEiJ_T0002218.1 MGP_CASTEiJ_G0002137.1 mouse_genomes_project 7 112739807 112741717 + TEC TEC MGP_CASTEiJ_T0084807.1 MGP_CASTEiJ_G0031448.1 mouse_genomes_project 7 73783653 73793138 - MGP_CASTEiJ_P0084807 Blm protein_coding protein_coding MGP_CASTEiJ_T0084808.1 MGP_CASTEiJ_G0031448.1 mouse_genomes_project 7 73784162 73869478 - MGP_CASTEiJ_P0084808 Blm protein_coding protein_coding MGP_CASTEiJ_T0084809.1 MGP_CASTEiJ_G0031448.1 mouse_genomes_project 7 73784261 73869357 - MGP_CASTEiJ_P0084809 Blm protein_coding protein_coding MGP_CASTEiJ_T0084810.1 MGP_CASTEiJ_G0031448.1 mouse_genomes_project 7 73784407 73786537 - Blm protein_coding processed_transcript MGP_CASTEiJ_T0084811.1 MGP_CASTEiJ_G0031448.1 mouse_genomes_project 7 73784562 73788417 - Blm protein_coding retained_intron MGP_CASTEiJ_T0084812.1 MGP_CASTEiJ_G0031448.1 mouse_genomes_project 7 73784590 73789985 - MGP_CASTEiJ_P0084812 Blm protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084813.1 MGP_CASTEiJ_G0031448.1 mouse_genomes_project 7 73794022 73797716 - MGP_CASTEiJ_P0084813 Blm protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084814.1 MGP_CASTEiJ_G0031448.1 mouse_genomes_project 7 73799497 73848837 - Blm protein_coding retained_intron MGP_CASTEiJ_T0084815.1 MGP_CASTEiJ_G0031448.1 mouse_genomes_project 7 73799523 73802030 - Blm protein_coding retained_intron MGP_CASTEiJ_T0084816.1 MGP_CASTEiJ_G0031448.1 mouse_genomes_project 7 73804353 73814051 - Blm protein_coding retained_intron MGP_CASTEiJ_T0085841.1 MGP_CASTEiJ_G0031801.1 mouse_genomes_project 7 101734790 101742994 + MGP_CASTEiJ_P0085841 Olfr701 protein_coding protein_coding MGP_CASTEiJ_T0085842.1 MGP_CASTEiJ_G0031801.1 mouse_genomes_project 7 101734825 101740372 + MGP_CASTEiJ_P0085842 Olfr701 protein_coding protein_coding MGP_CASTEiJ_T0101264.1 MGP_CASTEiJ_G0038177.1 mouse_genomes_project 7 101361061 101361197 + Gm22372 snoRNA snoRNA MGP_CASTEiJ_T0087432.1 MGP_CASTEiJ_G0032174.1 mouse_genomes_project 7 135901043 135998601 - MGP_CASTEiJ_P0087432 Stk32c protein_coding unknown_likely_coding MGP_CASTEiJ_T0087433.1 MGP_CASTEiJ_G0032174.1 mouse_genomes_project 7 135914101 136025349 - MGP_CASTEiJ_P0087433 Stk32c protein_coding protein_coding MGP_CASTEiJ_T0087434.1 MGP_CASTEiJ_G0032174.1 mouse_genomes_project 7 135914101 135998704 - MGP_CASTEiJ_P0087434 Stk32c protein_coding protein_coding MGP_CASTEiJ_T0011359.1 MGP_CASTEiJ_G0009547.1 mouse_genomes_project 7 85292403 85292608 - Gm27660 misc_RNA misc_RNA MGP_CASTEiJ_T0085131.1 MGP_CASTEiJ_G0031547.1 mouse_genomes_project 7 91701056 91720505 - MGP_CASTEiJ_P0085131 Usp35 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085132.1 MGP_CASTEiJ_G0031547.1 mouse_genomes_project 7 91702376 91726530 - MGP_CASTEiJ_P0085132 Usp35 protein_coding protein_coding MGP_CASTEiJ_T0085133.1 MGP_CASTEiJ_G0031547.1 mouse_genomes_project 7 91702376 91720473 - MGP_CASTEiJ_P0085133 Usp35 protein_coding protein_coding MGP_CASTEiJ_T0085134.1 MGP_CASTEiJ_G0031547.1 mouse_genomes_project 7 91702402 91708991 - Usp35 protein_coding processed_transcript MGP_CASTEiJ_T0085135.1 MGP_CASTEiJ_G0031547.1 mouse_genomes_project 7 91705470 91708022 - Usp35 protein_coding retained_intron MGP_CASTEiJ_T0085136.1 MGP_CASTEiJ_G0031547.1 mouse_genomes_project 7 91705585 91708992 - Usp35 protein_coding processed_transcript MGP_CASTEiJ_T0085137.1 MGP_CASTEiJ_G0031547.1 mouse_genomes_project 7 91712174 91718898 - Usp35 protein_coding retained_intron MGP_CASTEiJ_T0102446.1 MGP_CASTEiJ_G0039171.1 mouse_genomes_project 7 842785 844458 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008790.1 MGP_CASTEiJ_G0007094.1 mouse_genomes_project 7 122762447 122766239 - lincRNA lincRNA MGP_CASTEiJ_T0008791.1 MGP_CASTEiJ_G0007094.1 mouse_genomes_project 7 122763350 122766827 - lincRNA lincRNA MGP_CASTEiJ_T0008792.1 MGP_CASTEiJ_G0007094.1 mouse_genomes_project 7 122763350 122766566 - lincRNA lincRNA MGP_CASTEiJ_T0008793.1 MGP_CASTEiJ_G0007094.1 mouse_genomes_project 7 122763350 122766548 - lincRNA lincRNA MGP_CASTEiJ_T0008794.1 MGP_CASTEiJ_G0007094.1 mouse_genomes_project 7 122763351 122766517 - lincRNA lincRNA MGP_CASTEiJ_T0008795.1 MGP_CASTEiJ_G0007094.1 mouse_genomes_project 7 122763352 122766575 - lincRNA lincRNA MGP_CASTEiJ_T0008796.1 MGP_CASTEiJ_G0007094.1 mouse_genomes_project 7 122765583 122766781 - lincRNA lincRNA MGP_CASTEiJ_T0085883.1 MGP_CASTEiJ_G0031835.1 mouse_genomes_project 7 102983284 102984313 - MGP_CASTEiJ_P0085883 Olfr480 protein_coding protein_coding MGP_CASTEiJ_T0084943.1 MGP_CASTEiJ_G0031477.1 mouse_genomes_project 7 76378343 76382577 + MGP_CASTEiJ_P0084943 Mex3b protein_coding protein_coding MGP_CASTEiJ_T0015231.1 MGP_CASTEiJ_G0013394.1 mouse_genomes_project 7 58782325 58782606 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083539.1 MGP_CASTEiJ_G0031150.1 mouse_genomes_project 7 33487798 33502049 + MGP_CASTEiJ_P0083539 Zfp788 protein_coding protein_coding MGP_CASTEiJ_T0083540.1 MGP_CASTEiJ_G0031150.1 mouse_genomes_project 7 33488126 33505379 + MGP_CASTEiJ_P0083540 Zfp788 protein_coding protein_coding MGP_CASTEiJ_T0083541.1 MGP_CASTEiJ_G0031150.1 mouse_genomes_project 7 33488151 33502859 + MGP_CASTEiJ_P0083541 Zfp788 protein_coding protein_coding MGP_CASTEiJ_T0083542.1 MGP_CASTEiJ_G0031150.1 mouse_genomes_project 7 33488153 33503498 + MGP_CASTEiJ_P0083542 Zfp788 protein_coding protein_coding MGP_CASTEiJ_T0083543.1 MGP_CASTEiJ_G0031150.1 mouse_genomes_project 7 33488159 33505430 + MGP_CASTEiJ_P0083543 Zfp788 protein_coding protein_coding MGP_CASTEiJ_T0083544.1 MGP_CASTEiJ_G0031150.1 mouse_genomes_project 7 33488172 33506249 + MGP_CASTEiJ_P0083544 Zfp788 protein_coding protein_coding MGP_CASTEiJ_T0083545.1 MGP_CASTEiJ_G0031150.1 mouse_genomes_project 7 33502084 33505097 + MGP_CASTEiJ_P0083545 Zfp788 protein_coding protein_coding MGP_CASTEiJ_T0083253.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23747221 23751137 - MGP_CASTEiJ_P0083253 Fxyd1 protein_coding protein_coding MGP_CASTEiJ_T0083254.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23747221 23750952 - MGP_CASTEiJ_P0083254 Fxyd1 protein_coding protein_coding MGP_CASTEiJ_T0083255.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23747223 23749076 - Fxyd1 protein_coding retained_intron MGP_CASTEiJ_T0083256.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23747223 23751210 - MGP_CASTEiJ_P0083256 Fxyd1 protein_coding protein_coding MGP_CASTEiJ_T0083257.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23747223 23750343 - MGP_CASTEiJ_P0083257 Fxyd1 protein_coding protein_coding MGP_CASTEiJ_T0083258.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23747224 23748666 - MGP_CASTEiJ_P0083258 Fxyd1 protein_coding protein_coding MGP_CASTEiJ_T0083259.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23747224 23751199 - MGP_CASTEiJ_P0083259 Fxyd1 protein_coding protein_coding MGP_CASTEiJ_T0083260.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23747225 23747737 - Fxyd1 protein_coding retained_intron MGP_CASTEiJ_T0083261.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23747225 23750331 - MGP_CASTEiJ_P0083261 Fxyd1 protein_coding protein_coding MGP_CASTEiJ_T0083262.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23747225 23750350 - MGP_CASTEiJ_P0083262 Fxyd1 protein_coding protein_coding MGP_CASTEiJ_T0083263.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23747226 23750361 - MGP_CASTEiJ_P0083263 Fxyd1 protein_coding protein_coding MGP_CASTEiJ_T0083264.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23747251 23751125 - MGP_CASTEiJ_P0083264 Fxyd1 protein_coding protein_coding MGP_CASTEiJ_T0083265.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23747271 23750362 - MGP_CASTEiJ_P0083265 Fxyd1 protein_coding protein_coding MGP_CASTEiJ_T0083266.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23747478 23751251 - MGP_CASTEiJ_P0083266 Fxyd1 protein_coding protein_coding MGP_CASTEiJ_T0083267.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23747671 23749588 - Fxyd1 protein_coding retained_intron MGP_CASTEiJ_T0083268.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23749032 23751166 - Fxyd1 protein_coding retained_intron MGP_CASTEiJ_T0083269.1 MGP_CASTEiJ_G0031095.1 mouse_genomes_project 7 23749305 23752720 - Fxyd1 protein_coding retained_intron MGP_CASTEiJ_T0081770.1 MGP_CASTEiJ_G0030714.1 mouse_genomes_project 7 8049377 8053760 + MGP_CASTEiJ_P0081770 Rps5 protein_coding protein_coding MGP_CASTEiJ_T0081771.1 MGP_CASTEiJ_G0030714.1 mouse_genomes_project 7 8049377 8053759 + MGP_CASTEiJ_P0081771 Rps5 protein_coding protein_coding MGP_CASTEiJ_T0081772.1 MGP_CASTEiJ_G0030714.1 mouse_genomes_project 7 8049405 8053569 + MGP_CASTEiJ_P0081772 Rps5 protein_coding protein_coding MGP_CASTEiJ_T0081773.1 MGP_CASTEiJ_G0030714.1 mouse_genomes_project 7 8049418 8053309 + Rps5 protein_coding retained_intron MGP_CASTEiJ_T0081774.1 MGP_CASTEiJ_G0030714.1 mouse_genomes_project 7 8049423 8050454 + Rps5 protein_coding retained_intron MGP_CASTEiJ_T0081775.1 MGP_CASTEiJ_G0030714.1 mouse_genomes_project 7 8049524 8053569 + MGP_CASTEiJ_P0081775 Rps5 protein_coding protein_coding MGP_CASTEiJ_T0081776.1 MGP_CASTEiJ_G0030714.1 mouse_genomes_project 7 8053126 8053758 + Rps5 protein_coding retained_intron MGP_CASTEiJ_T0081638.1 MGP_CASTEiJ_G0030644.1 mouse_genomes_project 7 1981796 1985549 + MGP_CASTEiJ_P0081638 protein_coding protein_coding MGP_CASTEiJ_T0081742.1 MGP_CASTEiJ_G0030702.1 mouse_genomes_project 7 7412788 7413709 - MGP_CASTEiJ_P0081742 Vmn1r81 protein_coding protein_coding MGP_CASTEiJ_T0084919.1 MGP_CASTEiJ_G0031473.1 mouse_genomes_project 7 75651366 75766581 + MGP_CASTEiJ_P0084919 Sh3gl3 protein_coding protein_coding MGP_CASTEiJ_T0084920.1 MGP_CASTEiJ_G0031473.1 mouse_genomes_project 7 75652013 75749220 + Sh3gl3 protein_coding retained_intron MGP_CASTEiJ_T0084921.1 MGP_CASTEiJ_G0031473.1 mouse_genomes_project 7 75652027 75787279 + MGP_CASTEiJ_P0084921 Sh3gl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084922.1 MGP_CASTEiJ_G0031473.1 mouse_genomes_project 7 75652121 75787279 + MGP_CASTEiJ_P0084922 Sh3gl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084923.1 MGP_CASTEiJ_G0031473.1 mouse_genomes_project 7 75652146 75787278 + MGP_CASTEiJ_P0084923 Sh3gl3 protein_coding protein_coding MGP_CASTEiJ_T0084924.1 MGP_CASTEiJ_G0031473.1 mouse_genomes_project 7 75652327 75766644 + MGP_CASTEiJ_P0084924 Sh3gl3 protein_coding protein_coding MGP_CASTEiJ_T0084925.1 MGP_CASTEiJ_G0031473.1 mouse_genomes_project 7 75652405 75653501 + Sh3gl3 protein_coding processed_transcript MGP_CASTEiJ_T0084926.1 MGP_CASTEiJ_G0031473.1 mouse_genomes_project 7 75750056 75787088 + MGP_CASTEiJ_P0084926 Sh3gl3 protein_coding protein_coding MGP_CASTEiJ_T0100027.1 MGP_CASTEiJ_G0036940.1 mouse_genomes_project 7 99274633 99274741 - Gm24846 snRNA snRNA MGP_CASTEiJ_T0085031.1 MGP_CASTEiJ_G0031520.1 mouse_genomes_project 7 82538309 82603518 + MGP_CASTEiJ_P0085031 Rab38 protein_coding protein_coding MGP_CASTEiJ_T0085701.1 MGP_CASTEiJ_G0031747.1 mouse_genomes_project 7 99598505 99599466 + MGP_CASTEiJ_P0085701 Olfr657 protein_coding protein_coding MGP_CASTEiJ_T0008651.1 MGP_CASTEiJ_G0007001.1 mouse_genomes_project 7 56580179 56588441 - Gm45054 lincRNA lincRNA MGP_CASTEiJ_T0086859.1 MGP_CASTEiJ_G0032053.1 mouse_genomes_project 7 123027850 123031759 - MGP_CASTEiJ_P0086859 Sept1 protein_coding protein_coding MGP_CASTEiJ_T0086860.1 MGP_CASTEiJ_G0032053.1 mouse_genomes_project 7 123027855 123028529 - Sept1 protein_coding retained_intron MGP_CASTEiJ_T0086861.1 MGP_CASTEiJ_G0032053.1 mouse_genomes_project 7 123028175 123031821 - MGP_CASTEiJ_P0086861 Sept1 protein_coding protein_coding MGP_CASTEiJ_T0086862.1 MGP_CASTEiJ_G0032053.1 mouse_genomes_project 7 123028369 123030394 - Sept1 protein_coding retained_intron MGP_CASTEiJ_T0086863.1 MGP_CASTEiJ_G0032053.1 mouse_genomes_project 7 123029288 123031740 - MGP_CASTEiJ_P0086863 Sept1 protein_coding protein_coding MGP_CASTEiJ_T0086864.1 MGP_CASTEiJ_G0032053.1 mouse_genomes_project 7 123030082 123046681 - MGP_CASTEiJ_P0086864 Sept1 protein_coding protein_coding MGP_CASTEiJ_T0086865.1 MGP_CASTEiJ_G0032053.1 mouse_genomes_project 7 123030119 123031776 - Sept1 protein_coding retained_intron MGP_CASTEiJ_T0086866.1 MGP_CASTEiJ_G0032053.1 mouse_genomes_project 7 123030326 123031581 - Sept1 protein_coding processed_transcript MGP_CASTEiJ_T0086867.1 MGP_CASTEiJ_G0032053.1 mouse_genomes_project 7 123046452 123047165 - Sept1 protein_coding retained_intron MGP_CASTEiJ_T0086501.1 MGP_CASTEiJ_G0031995.1 mouse_genomes_project 7 121322279 121353280 + MGP_CASTEiJ_P0086501 Il21r protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086502.1 MGP_CASTEiJ_G0031995.1 mouse_genomes_project 7 121322296 121355314 + MGP_CASTEiJ_P0086502 Il21r protein_coding protein_coding MGP_CASTEiJ_T0084458.1 MGP_CASTEiJ_G0031386.1 mouse_genomes_project 7 59296175 59319395 + MGP_CASTEiJ_P0084458 Lins1 protein_coding protein_coding MGP_CASTEiJ_T0084459.1 MGP_CASTEiJ_G0031386.1 mouse_genomes_project 7 59296180 59325759 + MGP_CASTEiJ_P0084459 Lins1 protein_coding protein_coding MGP_CASTEiJ_T0084460.1 MGP_CASTEiJ_G0031386.1 mouse_genomes_project 7 59296235 59320942 + Lins1 protein_coding retained_intron MGP_CASTEiJ_T0084461.1 MGP_CASTEiJ_G0031386.1 mouse_genomes_project 7 59296244 59328268 + MGP_CASTEiJ_P0084461 Lins1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084462.1 MGP_CASTEiJ_G0031386.1 mouse_genomes_project 7 59296244 59325756 + MGP_CASTEiJ_P0084462 Lins1 protein_coding protein_coding MGP_CASTEiJ_T0084463.1 MGP_CASTEiJ_G0031386.1 mouse_genomes_project 7 59296257 59325759 + MGP_CASTEiJ_P0084463 Lins1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084464.1 MGP_CASTEiJ_G0031386.1 mouse_genomes_project 7 59314887 59328273 + MGP_CASTEiJ_P0084464 Lins1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084465.1 MGP_CASTEiJ_G0031386.1 mouse_genomes_project 7 59319067 59325699 + MGP_CASTEiJ_P0084465 Lins1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084466.1 MGP_CASTEiJ_G0031386.1 mouse_genomes_project 7 59319215 59321411 + MGP_CASTEiJ_P0084466 Lins1 protein_coding protein_coding MGP_CASTEiJ_T0084467.1 MGP_CASTEiJ_G0031386.1 mouse_genomes_project 7 59319360 59321600 + MGP_CASTEiJ_P0084467 Lins1 protein_coding protein_coding MGP_CASTEiJ_T0084468.1 MGP_CASTEiJ_G0031386.1 mouse_genomes_project 7 59320447 59324862 + MGP_CASTEiJ_P0084468 Lins1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084469.1 MGP_CASTEiJ_G0031386.1 mouse_genomes_project 7 59321181 59328266 + Lins1 protein_coding retained_intron MGP_CASTEiJ_T0085139.1 MGP_CASTEiJ_G0031549.1 mouse_genomes_project 7 91770503 91791685 + MGP_CASTEiJ_P0085139 Alg8 protein_coding protein_coding MGP_CASTEiJ_T0085140.1 MGP_CASTEiJ_G0031549.1 mouse_genomes_project 7 91785653 91791247 + Alg8 protein_coding retained_intron MGP_CASTEiJ_T0085141.1 MGP_CASTEiJ_G0031549.1 mouse_genomes_project 7 91785910 91791581 + Alg8 protein_coding processed_transcript MGP_CASTEiJ_T0085142.1 MGP_CASTEiJ_G0031549.1 mouse_genomes_project 7 91786238 91791144 + Alg8 protein_coding processed_transcript MGP_CASTEiJ_T0085143.1 MGP_CASTEiJ_G0031549.1 mouse_genomes_project 7 91787058 91791305 + Alg8 protein_coding retained_intron MGP_CASTEiJ_T0085144.1 MGP_CASTEiJ_G0031549.1 mouse_genomes_project 7 91790272 91791388 + Alg8 protein_coding retained_intron MGP_CASTEiJ_T0002182.1 MGP_CASTEiJ_G0002102.1 mouse_genomes_project 7 66524199 66525660 - TEC TEC MGP_CASTEiJ_T0083157.1 MGP_CASTEiJ_G0031075.1 mouse_genomes_project 7 23328283 23329166 - MGP_CASTEiJ_P0083157 Pmis2 protein_coding protein_coding MGP_CASTEiJ_T0083158.1 MGP_CASTEiJ_G0031075.1 mouse_genomes_project 7 23328320 23329161 - Pmis2 protein_coding processed_transcript MGP_CASTEiJ_T0083846.1 MGP_CASTEiJ_G0031236.1 mouse_genomes_project 7 37607942 37611800 - MGP_CASTEiJ_P0083846 protein_coding protein_coding MGP_CASTEiJ_T0083847.1 MGP_CASTEiJ_G0031236.1 mouse_genomes_project 7 37608323 37611863 - MGP_CASTEiJ_P0083847 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085743.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100669655 100695478 - MGP_CASTEiJ_P0085743 Apbb1 protein_coding protein_coding MGP_CASTEiJ_T0085744.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100669656 100681776 - MGP_CASTEiJ_P0085744 Apbb1 protein_coding protein_coding MGP_CASTEiJ_T0085745.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100669656 100695103 - MGP_CASTEiJ_P0085745 Apbb1 protein_coding protein_coding MGP_CASTEiJ_T0085746.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100669656 100682296 - MGP_CASTEiJ_P0085746 Apbb1 protein_coding protein_coding MGP_CASTEiJ_T0085747.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100669656 100682512 - MGP_CASTEiJ_P0085747 Apbb1 protein_coding protein_coding MGP_CASTEiJ_T0085748.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100669658 100687225 - MGP_CASTEiJ_P0085748 Apbb1 protein_coding protein_coding MGP_CASTEiJ_T0085749.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100669659 100681955 - Apbb1 protein_coding retained_intron MGP_CASTEiJ_T0085750.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100669675 100695316 - MGP_CASTEiJ_P0085750 Apbb1 protein_coding protein_coding MGP_CASTEiJ_T0085751.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100669695 100682291 - MGP_CASTEiJ_P0085751 Apbb1 protein_coding protein_coding MGP_CASTEiJ_T0085752.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100669990 100681776 - MGP_CASTEiJ_P0085752 Apbb1 protein_coding protein_coding MGP_CASTEiJ_T0085753.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100670331 100676484 - Apbb1 protein_coding retained_intron MGP_CASTEiJ_T0085754.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100670638 100678273 - Apbb1 protein_coding retained_intron MGP_CASTEiJ_T0085755.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100676568 100695017 - MGP_CASTEiJ_P0085755 Apbb1 protein_coding protein_coding MGP_CASTEiJ_T0085756.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100677085 100681962 - MGP_CASTEiJ_P0085756 Apbb1 protein_coding protein_coding MGP_CASTEiJ_T0085757.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100677528 100682264 - MGP_CASTEiJ_P0085757 Apbb1 protein_coding protein_coding MGP_CASTEiJ_T0085758.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100677643 100682272 - MGP_CASTEiJ_P0085758 Apbb1 protein_coding protein_coding MGP_CASTEiJ_T0085759.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100678072 100682591 - MGP_CASTEiJ_P0085759 Apbb1 protein_coding protein_coding MGP_CASTEiJ_T0085760.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100678146 100681669 - Apbb1 protein_coding retained_intron MGP_CASTEiJ_T0085761.1 MGP_CASTEiJ_G0031780.1 mouse_genomes_project 7 100686790 100695013 - MGP_CASTEiJ_P0085761 Apbb1 protein_coding protein_coding MGP_CASTEiJ_T0087802.1 MGP_CASTEiJ_G0032269.1 mouse_genomes_project 7 138841866 138879674 + MGP_CASTEiJ_P0087802 Muc5b protein_coding protein_coding MGP_CASTEiJ_T0082368.1 MGP_CASTEiJ_G0030890.1 mouse_genomes_project 7 17128855 17136489 + MGP_CASTEiJ_P0082368 Dmrtc2 protein_coding protein_coding MGP_CASTEiJ_T0008582.1 MGP_CASTEiJ_G0006945.1 mouse_genomes_project 7 14170801 14182333 - Gm26852 lincRNA lincRNA MGP_CASTEiJ_T0005083.1 MGP_CASTEiJ_G0004333.1 mouse_genomes_project 7 56908105 56917783 - Gm20457 antisense antisense MGP_CASTEiJ_T0011348.1 MGP_CASTEiJ_G0009536.1 mouse_genomes_project 7 10643140 10643385 + Gm24576 misc_RNA misc_RNA MGP_CASTEiJ_T0017680.1 MGP_CASTEiJ_G0015014.1 mouse_genomes_project 7 136841300 136855214 + Gm16201 processed_transcript processed_transcript MGP_CASTEiJ_T0017681.1 MGP_CASTEiJ_G0015014.1 mouse_genomes_project 7 136841344 136874075 + Gm16201 processed_transcript processed_transcript MGP_CASTEiJ_T0008577.1 MGP_CASTEiJ_G0006941.1 mouse_genomes_project 7 11362104 11365991 - lincRNA lincRNA MGP_CASTEiJ_T0087546.1 MGP_CASTEiJ_G0032217.1 mouse_genomes_project 7 137700003 137710638 - MGP_CASTEiJ_P0087546 Syce1 protein_coding protein_coding MGP_CASTEiJ_T0101245.1 MGP_CASTEiJ_G0038158.1 mouse_genomes_project 7 52167889 52167968 - snoRNA snoRNA MGP_CASTEiJ_T0088052.1 MGP_CASTEiJ_G0032317.1 mouse_genomes_project 7 142530553 142540567 + MGP_CASTEiJ_P0088052 Mrgprf protein_coding protein_coding MGP_CASTEiJ_T0088053.1 MGP_CASTEiJ_G0032317.1 mouse_genomes_project 7 142530624 142540359 + MGP_CASTEiJ_P0088053 Mrgprf protein_coding protein_coding MGP_CASTEiJ_T0086639.1 MGP_CASTEiJ_G0032016.1 mouse_genomes_project 7 122417730 122432228 + Sgf29 protein_coding processed_transcript MGP_CASTEiJ_T0086640.1 MGP_CASTEiJ_G0032016.1 mouse_genomes_project 7 122417730 122454279 + MGP_CASTEiJ_P0086640 Sgf29 protein_coding protein_coding MGP_CASTEiJ_T0086641.1 MGP_CASTEiJ_G0032016.1 mouse_genomes_project 7 122417733 122433163 + MGP_CASTEiJ_P0086641 Sgf29 protein_coding protein_coding MGP_CASTEiJ_T0086642.1 MGP_CASTEiJ_G0032016.1 mouse_genomes_project 7 122417743 122432323 + Sgf29 protein_coding retained_intron MGP_CASTEiJ_T0086643.1 MGP_CASTEiJ_G0032016.1 mouse_genomes_project 7 122417768 122453236 + Sgf29 protein_coding retained_intron MGP_CASTEiJ_T0086644.1 MGP_CASTEiJ_G0032016.1 mouse_genomes_project 7 122417823 122453593 + MGP_CASTEiJ_P0086644 Sgf29 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086645.1 MGP_CASTEiJ_G0032016.1 mouse_genomes_project 7 122429320 122453672 + MGP_CASTEiJ_P0086645 Sgf29 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086646.1 MGP_CASTEiJ_G0032016.1 mouse_genomes_project 7 122432016 122452043 + Sgf29 protein_coding retained_intron MGP_CASTEiJ_T0086649.1 MGP_CASTEiJ_G0032016.1 mouse_genomes_project 7 122452931 122453746 + MGP_CASTEiJ_P0086649 Sgf29 protein_coding protein_coding MGP_CASTEiJ_T0086650.1 MGP_CASTEiJ_G0032016.1 mouse_genomes_project 7 122453384 122454133 + Sgf29 protein_coding processed_transcript MGP_CASTEiJ_T0081371.1 MGP_CASTEiJ_G0030591.1 mouse_genomes_project 7 337633 350221 + MGP_CASTEiJ_P0081371 Cacng6 protein_coding protein_coding MGP_CASTEiJ_T0081372.1 MGP_CASTEiJ_G0030591.1 mouse_genomes_project 7 338100 349713 + MGP_CASTEiJ_P0081372 Cacng6 protein_coding protein_coding MGP_CASTEiJ_T0085145.1 MGP_CASTEiJ_G0031550.1 mouse_genomes_project 7 91801098 91809867 + MGP_CASTEiJ_P0085145 Ndufc2 protein_coding protein_coding MGP_CASTEiJ_T0085146.1 MGP_CASTEiJ_G0031550.1 mouse_genomes_project 7 91801198 91809143 + MGP_CASTEiJ_P0085146 Ndufc2 protein_coding protein_coding MGP_CASTEiJ_T0085534.1 MGP_CASTEiJ_G0031631.1 mouse_genomes_project 7 96860640 96957852 - MGP_CASTEiJ_P0085534 Nup98 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085535.1 MGP_CASTEiJ_G0031631.1 mouse_genomes_project 7 96875385 96957879 - MGP_CASTEiJ_P0085535 Nup98 protein_coding protein_coding MGP_CASTEiJ_T0017583.1 MGP_CASTEiJ_G0014973.1 mouse_genomes_project 7 17076484 17097071 + Gm5893 processed_transcript lincRNA MGP_CASTEiJ_T0017584.1 MGP_CASTEiJ_G0014973.1 mouse_genomes_project 7 17076484 17097056 + Gm5893 processed_transcript processed_transcript MGP_CASTEiJ_T0017585.1 MGP_CASTEiJ_G0014973.1 mouse_genomes_project 7 17079773 17083507 + Gm5893 processed_transcript retained_intron MGP_CASTEiJ_T0017586.1 MGP_CASTEiJ_G0014973.1 mouse_genomes_project 7 17085939 17097069 + Gm5893 processed_transcript retained_intron MGP_CASTEiJ_T0086632.1 MGP_CASTEiJ_G0032014.1 mouse_genomes_project 7 122355823 122361566 - MGP_CASTEiJ_P0086632 Il27 protein_coding protein_coding MGP_CASTEiJ_T0010546.1 MGP_CASTEiJ_G0008734.1 mouse_genomes_project 7 19567634 19567754 + Mir1191 miRNA miRNA MGP_CASTEiJ_T0015286.1 MGP_CASTEiJ_G0013449.1 mouse_genomes_project 7 97930957 97931620 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0087987.1 MGP_CASTEiJ_G0032303.1 mouse_genomes_project 7 140947994 140975636 - MGP_CASTEiJ_P0087987 Nadsyn1 protein_coding protein_coding MGP_CASTEiJ_T0087988.1 MGP_CASTEiJ_G0032303.1 mouse_genomes_project 7 140948260 140975582 - MGP_CASTEiJ_P0087988 Nadsyn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087989.1 MGP_CASTEiJ_G0032303.1 mouse_genomes_project 7 140948279 140975637 - MGP_CASTEiJ_P0087989 Nadsyn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087990.1 MGP_CASTEiJ_G0032303.1 mouse_genomes_project 7 140950217 140951210 - Nadsyn1 protein_coding retained_intron MGP_CASTEiJ_T0087991.1 MGP_CASTEiJ_G0032303.1 mouse_genomes_project 7 140965620 140975613 - MGP_CASTEiJ_P0087991 Nadsyn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087992.1 MGP_CASTEiJ_G0032303.1 mouse_genomes_project 7 140966142 140975543 - Nadsyn1 protein_coding retained_intron MGP_CASTEiJ_T0087993.1 MGP_CASTEiJ_G0032303.1 mouse_genomes_project 7 140966280 140975600 - MGP_CASTEiJ_P0087993 Nadsyn1 protein_coding protein_coding MGP_CASTEiJ_T0087994.1 MGP_CASTEiJ_G0032303.1 mouse_genomes_project 7 140968192 140975644 - Nadsyn1 protein_coding retained_intron MGP_CASTEiJ_T0081408.1 MGP_CASTEiJ_G0030599.1 mouse_genomes_project 7 549652 561312 - MGP_CASTEiJ_P0081408 Tmc4 protein_coding protein_coding MGP_CASTEiJ_T0081409.1 MGP_CASTEiJ_G0030599.1 mouse_genomes_project 7 549653 550746 - MGP_CASTEiJ_P0081409 Tmc4 protein_coding protein_coding MGP_CASTEiJ_T0081410.1 MGP_CASTEiJ_G0030599.1 mouse_genomes_project 7 549653 560552 - MGP_CASTEiJ_P0081410 Tmc4 protein_coding protein_coding MGP_CASTEiJ_T0081411.1 MGP_CASTEiJ_G0030599.1 mouse_genomes_project 7 549820 554401 - Tmc4 protein_coding retained_intron MGP_CASTEiJ_T0081412.1 MGP_CASTEiJ_G0030599.1 mouse_genomes_project 7 554495 560386 - Tmc4 protein_coding retained_intron MGP_CASTEiJ_T0081413.1 MGP_CASTEiJ_G0030599.1 mouse_genomes_project 7 554611 561283 - Tmc4 protein_coding retained_intron MGP_CASTEiJ_T0081414.1 MGP_CASTEiJ_G0030599.1 mouse_genomes_project 7 558913 561243 - Tmc4 protein_coding retained_intron MGP_CASTEiJ_T0099992.1 MGP_CASTEiJ_G0036905.1 mouse_genomes_project 7 1656153 1656255 + Gm24537 snRNA snRNA MGP_CASTEiJ_T0008700.1 MGP_CASTEiJ_G0007039.1 mouse_genomes_project 7 68893963 68896971 - AU020206 lincRNA lincRNA MGP_CASTEiJ_T0008701.1 MGP_CASTEiJ_G0007039.1 mouse_genomes_project 7 68894687 68909013 - AU020206 lincRNA lincRNA MGP_CASTEiJ_T0081777.1 MGP_CASTEiJ_G0030715.1 mouse_genomes_project 7 8054491 8058148 + MGP_CASTEiJ_P0081777 Rnf225 protein_coding protein_coding MGP_CASTEiJ_T0008648.1 MGP_CASTEiJ_G0006999.1 mouse_genomes_project 7 56499993 56507017 + Gm45052 lincRNA lincRNA MGP_CASTEiJ_T0087966.1 MGP_CASTEiJ_G0032296.1 mouse_genomes_project 7 140630187 140665433 - MGP_CASTEiJ_P0087966 Nap1l4 protein_coding protein_coding MGP_CASTEiJ_T0084093.1 MGP_CASTEiJ_G0031299.1 mouse_genomes_project 7 39077516 39287639 - MGP_CASTEiJ_P0084093 Sergef protein_coding protein_coding MGP_CASTEiJ_T0084094.1 MGP_CASTEiJ_G0031299.1 mouse_genomes_project 7 39077569 39246943 - Sergef protein_coding processed_transcript MGP_CASTEiJ_T0084095.1 MGP_CASTEiJ_G0031299.1 mouse_genomes_project 7 39077822 39258483 - Sergef protein_coding processed_transcript MGP_CASTEiJ_T0084096.1 MGP_CASTEiJ_G0031299.1 mouse_genomes_project 7 39278925 39282213 - Sergef protein_coding retained_intron MGP_CASTEiJ_T0084097.1 MGP_CASTEiJ_G0031299.1 mouse_genomes_project 7 39278947 39287463 - MGP_CASTEiJ_P0084097 Sergef protein_coding protein_coding MGP_CASTEiJ_T0084098.1 MGP_CASTEiJ_G0031299.1 mouse_genomes_project 7 39278961 39287412 - Sergef protein_coding processed_transcript MGP_CASTEiJ_T0015158.1 MGP_CASTEiJ_G0013321.1 mouse_genomes_project 7 17119437 17119987 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102515.1 MGP_CASTEiJ_G0039239.1 mouse_genomes_project 7 34467294 34467536 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0083757.1 MGP_CASTEiJ_G0031211.1 mouse_genomes_project 7 37177159 37193250 - MGP_CASTEiJ_P0083757 Zfp473 protein_coding protein_coding MGP_CASTEiJ_T0083758.1 MGP_CASTEiJ_G0031211.1 mouse_genomes_project 7 37177169 37197653 - MGP_CASTEiJ_P0083758 Zfp473 protein_coding protein_coding MGP_CASTEiJ_T0083759.1 MGP_CASTEiJ_G0031211.1 mouse_genomes_project 7 37177181 37197427 - MGP_CASTEiJ_P0083759 Zfp473 protein_coding protein_coding MGP_CASTEiJ_T0083760.1 MGP_CASTEiJ_G0031211.1 mouse_genomes_project 7 37177196 37197085 - MGP_CASTEiJ_P0083760 Zfp473 protein_coding protein_coding MGP_CASTEiJ_T0083761.1 MGP_CASTEiJ_G0031211.1 mouse_genomes_project 7 37177680 37197342 - MGP_CASTEiJ_P0083761 Zfp473 protein_coding protein_coding MGP_CASTEiJ_T0083762.1 MGP_CASTEiJ_G0031211.1 mouse_genomes_project 7 37180130 37197385 - MGP_CASTEiJ_P0083762 Zfp473 protein_coding protein_coding MGP_CASTEiJ_T0083763.1 MGP_CASTEiJ_G0031211.1 mouse_genomes_project 7 37180281 37200085 - MGP_CASTEiJ_P0083763 Zfp473 protein_coding protein_coding MGP_CASTEiJ_T0102475.1 MGP_CASTEiJ_G0039200.1 mouse_genomes_project 7 9539850 9540331 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0086660.1 MGP_CASTEiJ_G0032021.1 mouse_genomes_project 7 122469368 122473827 - MGP_CASTEiJ_P0086660 Coro1a protein_coding protein_coding MGP_CASTEiJ_T0086661.1 MGP_CASTEiJ_G0032021.1 mouse_genomes_project 7 122469368 122474423 - MGP_CASTEiJ_P0086661 Coro1a protein_coding protein_coding MGP_CASTEiJ_T0086662.1 MGP_CASTEiJ_G0032021.1 mouse_genomes_project 7 122469476 122472779 - MGP_CASTEiJ_P0086662 Coro1a protein_coding protein_coding MGP_CASTEiJ_T0086663.1 MGP_CASTEiJ_G0032021.1 mouse_genomes_project 7 122469906 122470827 - Coro1a protein_coding retained_intron MGP_CASTEiJ_T0086664.1 MGP_CASTEiJ_G0032021.1 mouse_genomes_project 7 122469950 122470860 - Coro1a protein_coding retained_intron MGP_CASTEiJ_T0086665.1 MGP_CASTEiJ_G0032021.1 mouse_genomes_project 7 122470590 122471695 - Coro1a protein_coding retained_intron MGP_CASTEiJ_T0086666.1 MGP_CASTEiJ_G0032021.1 mouse_genomes_project 7 122470591 122472780 - MGP_CASTEiJ_P0086666 Coro1a protein_coding protein_coding MGP_CASTEiJ_T0086667.1 MGP_CASTEiJ_G0032021.1 mouse_genomes_project 7 122470929 122472070 - Coro1a protein_coding retained_intron MGP_CASTEiJ_T0086668.1 MGP_CASTEiJ_G0032021.1 mouse_genomes_project 7 122470946 122474361 - MGP_CASTEiJ_P0086668 Coro1a protein_coding protein_coding MGP_CASTEiJ_T0086669.1 MGP_CASTEiJ_G0032021.1 mouse_genomes_project 7 122471490 122474154 - MGP_CASTEiJ_P0086669 Coro1a protein_coding protein_coding MGP_CASTEiJ_T0086670.1 MGP_CASTEiJ_G0032021.1 mouse_genomes_project 7 122471501 122477357 - MGP_CASTEiJ_P0086670 Coro1a protein_coding protein_coding MGP_CASTEiJ_T0086671.1 MGP_CASTEiJ_G0032021.1 mouse_genomes_project 7 122472437 122474360 - Coro1a protein_coding retained_intron MGP_CASTEiJ_T0085048.1 MGP_CASTEiJ_G0031527.1 mouse_genomes_project 7 84024477 84053317 - MGP_CASTEiJ_P0085048 l7Rn6 protein_coding protein_coding MGP_CASTEiJ_T0085049.1 MGP_CASTEiJ_G0031527.1 mouse_genomes_project 7 84026111 84053385 - MGP_CASTEiJ_P0085049 l7Rn6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085050.1 MGP_CASTEiJ_G0031527.1 mouse_genomes_project 7 84026328 84053403 - MGP_CASTEiJ_P0085050 l7Rn6 protein_coding protein_coding MGP_CASTEiJ_T0085051.1 MGP_CASTEiJ_G0031527.1 mouse_genomes_project 7 84026980 84032107 - l7Rn6 protein_coding retained_intron MGP_CASTEiJ_T0085052.1 MGP_CASTEiJ_G0031527.1 mouse_genomes_project 7 84040392 84053484 - l7Rn6 protein_coding processed_transcript MGP_CASTEiJ_T0084002.1 MGP_CASTEiJ_G0031273.1 mouse_genomes_project 7 38256442 38273181 - MGP_CASTEiJ_P0084002 Sec1 protein_coding protein_coding MGP_CASTEiJ_T0081393.1 MGP_CASTEiJ_G0030596.1 mouse_genomes_project 7 514003 526475 + MGP_CASTEiJ_P0081393 Prpf31 protein_coding protein_coding MGP_CASTEiJ_T0081394.1 MGP_CASTEiJ_G0030596.1 mouse_genomes_project 7 514003 526476 + MGP_CASTEiJ_P0081394 Prpf31 protein_coding protein_coding MGP_CASTEiJ_T0081395.1 MGP_CASTEiJ_G0030596.1 mouse_genomes_project 7 514010 515434 + Prpf31 protein_coding retained_intron MGP_CASTEiJ_T0081396.1 MGP_CASTEiJ_G0030596.1 mouse_genomes_project 7 514077 521058 + MGP_CASTEiJ_P0081396 Prpf31 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081397.1 MGP_CASTEiJ_G0030596.1 mouse_genomes_project 7 514571 525232 + MGP_CASTEiJ_P0081397 Prpf31 protein_coding protein_coding MGP_CASTEiJ_T0081398.1 MGP_CASTEiJ_G0030596.1 mouse_genomes_project 7 520084 521058 + Prpf31 protein_coding retained_intron MGP_CASTEiJ_T0082247.1 MGP_CASTEiJ_G0030851.1 mouse_genomes_project 7 14891444 14946398 + MGP_CASTEiJ_P0082247 Nlrp9b protein_coding protein_coding MGP_CASTEiJ_T0082248.1 MGP_CASTEiJ_G0030851.1 mouse_genomes_project 7 14891444 14910118 + MGP_CASTEiJ_P0082248 Nlrp9b protein_coding protein_coding MGP_CASTEiJ_T0082249.1 MGP_CASTEiJ_G0030851.1 mouse_genomes_project 7 14901827 14946398 + MGP_CASTEiJ_P0082249 Nlrp9b protein_coding protein_coding MGP_CASTEiJ_T0085889.1 MGP_CASTEiJ_G0031841.1 mouse_genomes_project 7 103204586 103205531 - MGP_CASTEiJ_P0085889 protein_coding protein_coding MGP_CASTEiJ_T0085654.1 MGP_CASTEiJ_G0031720.1 mouse_genomes_project 7 98915610 98916555 - MGP_CASTEiJ_P0085654 Olfr640 protein_coding protein_coding MGP_CASTEiJ_T0081739.1 MGP_CASTEiJ_G0030699.1 mouse_genomes_project 7 7187329 7188682 + MGP_CASTEiJ_P0081739 protein_coding protein_coding MGP_CASTEiJ_T0008821.1 MGP_CASTEiJ_G0007114.1 mouse_genomes_project 7 132216371 132232774 - 5830432E09Rik lincRNA lincRNA MGP_CASTEiJ_T0008822.1 MGP_CASTEiJ_G0007114.1 mouse_genomes_project 7 132228946 132232805 - 5830432E09Rik lincRNA lincRNA MGP_CASTEiJ_T0010614.1 MGP_CASTEiJ_G0008802.1 mouse_genomes_project 7 123341775 123341866 + miRNA miRNA MGP_CASTEiJ_T0086268.1 MGP_CASTEiJ_G0031939.1 mouse_genomes_project 7 115033190 115084580 + MGP_CASTEiJ_P0086268 Acsm2 protein_coding protein_coding MGP_CASTEiJ_T0086269.1 MGP_CASTEiJ_G0031939.1 mouse_genomes_project 7 115041612 115079420 + MGP_CASTEiJ_P0086269 Acsm2 protein_coding protein_coding MGP_CASTEiJ_T0086270.1 MGP_CASTEiJ_G0031939.1 mouse_genomes_project 7 115041828 115084580 + MGP_CASTEiJ_P0086270 Acsm2 protein_coding protein_coding MGP_CASTEiJ_T0086271.1 MGP_CASTEiJ_G0031939.1 mouse_genomes_project 7 115041832 115059898 + MGP_CASTEiJ_P0086271 Acsm2 protein_coding protein_coding MGP_CASTEiJ_T0086272.1 MGP_CASTEiJ_G0031939.1 mouse_genomes_project 7 115041906 115063657 + Acsm2 protein_coding processed_transcript MGP_CASTEiJ_T0086273.1 MGP_CASTEiJ_G0031939.1 mouse_genomes_project 7 115062408 115078989 + MGP_CASTEiJ_P0086273 Acsm2 protein_coding protein_coding MGP_CASTEiJ_T0086274.1 MGP_CASTEiJ_G0031939.1 mouse_genomes_project 7 115071666 115075363 + MGP_CASTEiJ_P0086274 Acsm2 protein_coding protein_coding MGP_CASTEiJ_T0086275.1 MGP_CASTEiJ_G0031939.1 mouse_genomes_project 7 115073680 115074269 + Acsm2 protein_coding retained_intron MGP_CASTEiJ_T0087967.1 MGP_CASTEiJ_G0032297.1 mouse_genomes_project 7 140673617 140721269 - MGP_CASTEiJ_P0087967 Cars protein_coding protein_coding MGP_CASTEiJ_T0087968.1 MGP_CASTEiJ_G0032297.1 mouse_genomes_project 7 140674094 140721235 - MGP_CASTEiJ_P0087968 Cars protein_coding protein_coding MGP_CASTEiJ_T0087969.1 MGP_CASTEiJ_G0032297.1 mouse_genomes_project 7 140678127 140685880 - Cars protein_coding processed_transcript MGP_CASTEiJ_T0087970.1 MGP_CASTEiJ_G0032297.1 mouse_genomes_project 7 140680969 140686646 - Cars protein_coding retained_intron MGP_CASTEiJ_T0087971.1 MGP_CASTEiJ_G0032297.1 mouse_genomes_project 7 140686456 140687725 - Cars protein_coding processed_transcript MGP_CASTEiJ_T0087972.1 MGP_CASTEiJ_G0032297.1 mouse_genomes_project 7 140687573 140692144 - Cars protein_coding retained_intron MGP_CASTEiJ_T0087973.1 MGP_CASTEiJ_G0032297.1 mouse_genomes_project 7 140704854 140717952 - Cars protein_coding processed_transcript MGP_CASTEiJ_T0087974.1 MGP_CASTEiJ_G0032297.1 mouse_genomes_project 7 140706261 140720860 - Cars protein_coding processed_transcript MGP_CASTEiJ_T0087975.1 MGP_CASTEiJ_G0032297.1 mouse_genomes_project 7 140711532 140721210 - Cars protein_coding processed_transcript MGP_CASTEiJ_T0015267.1 MGP_CASTEiJ_G0013430.1 mouse_genomes_project 7 89801762 89803227 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100044.1 MGP_CASTEiJ_G0036957.1 mouse_genomes_project 7 122703342 122703449 - Gm23445 snRNA snRNA MGP_CASTEiJ_T0102468.1 MGP_CASTEiJ_G0039193.1 mouse_genomes_project 7 8490347 8522591 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0084574.1 MGP_CASTEiJ_G0031407.1 mouse_genomes_project 7 68983205 69010714 + MGP_CASTEiJ_P0084574 Klhl25 protein_coding protein_coding MGP_CASTEiJ_T0084575.1 MGP_CASTEiJ_G0031407.1 mouse_genomes_project 7 68983233 69010713 + MGP_CASTEiJ_P0084575 Klhl25 protein_coding protein_coding MGP_CASTEiJ_T0084576.1 MGP_CASTEiJ_G0031407.1 mouse_genomes_project 7 68983236 69004186 + MGP_CASTEiJ_P0084576 Klhl25 protein_coding protein_coding MGP_CASTEiJ_T0084577.1 MGP_CASTEiJ_G0031407.1 mouse_genomes_project 7 68983259 69004182 + MGP_CASTEiJ_P0084577 Klhl25 protein_coding protein_coding MGP_CASTEiJ_T0084578.1 MGP_CASTEiJ_G0031407.1 mouse_genomes_project 7 68983292 69010108 + Klhl25 protein_coding processed_transcript MGP_CASTEiJ_T0084579.1 MGP_CASTEiJ_G0031407.1 mouse_genomes_project 7 68983336 69002322 + MGP_CASTEiJ_P0084579 Klhl25 protein_coding protein_coding MGP_CASTEiJ_T0086265.1 MGP_CASTEiJ_G0031936.1 mouse_genomes_project 7 114942528 114958713 - MGP_CASTEiJ_P0086265 Umod protein_coding protein_coding MGP_CASTEiJ_T0082251.1 MGP_CASTEiJ_G0030853.1 mouse_genomes_project 7 15603091 15607644 - MGP_CASTEiJ_P0082251 Vmn1r168 protein_coding protein_coding MGP_CASTEiJ_T0083274.1 MGP_CASTEiJ_G0031097.1 mouse_genomes_project 7 23767985 23779990 - MGP_CASTEiJ_P0083274 Fxyd3 protein_coding protein_coding MGP_CASTEiJ_T0083275.1 MGP_CASTEiJ_G0031097.1 mouse_genomes_project 7 23770350 23775473 - Fxyd3 protein_coding retained_intron MGP_CASTEiJ_T0083276.1 MGP_CASTEiJ_G0031097.1 mouse_genomes_project 7 23770352 23779941 - Fxyd3 protein_coding retained_intron MGP_CASTEiJ_T0083277.1 MGP_CASTEiJ_G0031097.1 mouse_genomes_project 7 23770352 23770854 - Fxyd3 protein_coding retained_intron MGP_CASTEiJ_T0083278.1 MGP_CASTEiJ_G0031097.1 mouse_genomes_project 7 23770352 23771268 - Fxyd3 protein_coding retained_intron MGP_CASTEiJ_T0083279.1 MGP_CASTEiJ_G0031097.1 mouse_genomes_project 7 23770353 23779955 - MGP_CASTEiJ_P0083279 Fxyd3 protein_coding protein_coding MGP_CASTEiJ_T0083280.1 MGP_CASTEiJ_G0031097.1 mouse_genomes_project 7 23770354 23775235 - Fxyd3 protein_coding retained_intron MGP_CASTEiJ_T0083281.1 MGP_CASTEiJ_G0031097.1 mouse_genomes_project 7 23770699 23778158 - MGP_CASTEiJ_P0083281 Fxyd3 protein_coding protein_coding MGP_CASTEiJ_T0083282.1 MGP_CASTEiJ_G0031097.1 mouse_genomes_project 7 23774723 23779940 - Fxyd3 protein_coding retained_intron MGP_CASTEiJ_T0083283.1 MGP_CASTEiJ_G0031097.1 mouse_genomes_project 7 23775199 23779931 - Fxyd3 protein_coding retained_intron MGP_CASTEiJ_T0083284.1 MGP_CASTEiJ_G0031097.1 mouse_genomes_project 7 23776208 23779949 - Fxyd3 protein_coding retained_intron MGP_CASTEiJ_T0085630.1 MGP_CASTEiJ_G0031696.1 mouse_genomes_project 7 98403383 98404346 + MGP_CASTEiJ_P0085630 Olfr619 protein_coding protein_coding MGP_CASTEiJ_T0081719.1 MGP_CASTEiJ_G0030683.1 mouse_genomes_project 7 4160142 4172354 + MGP_CASTEiJ_P0081719 Zfp418 protein_coding protein_coding MGP_CASTEiJ_T0002222.1 MGP_CASTEiJ_G0002141.1 mouse_genomes_project 7 117719052 117722201 + TEC TEC MGP_CASTEiJ_T0086083.1 MGP_CASTEiJ_G0031901.1 mouse_genomes_project 7 108577075 108580068 - MGP_CASTEiJ_P0086083 Pth protein_coding protein_coding MGP_CASTEiJ_T0086572.1 MGP_CASTEiJ_G0032005.1 mouse_genomes_project 7 122180278 122198766 + Rabep2 protein_coding retained_intron MGP_CASTEiJ_T0086573.1 MGP_CASTEiJ_G0032005.1 mouse_genomes_project 7 122180618 122187448 + Rabep2 protein_coding retained_intron MGP_CASTEiJ_T0086574.1 MGP_CASTEiJ_G0032005.1 mouse_genomes_project 7 122180651 122198774 + MGP_CASTEiJ_P0086574 Rabep2 protein_coding protein_coding MGP_CASTEiJ_T0086575.1 MGP_CASTEiJ_G0032005.1 mouse_genomes_project 7 122180731 122197961 + MGP_CASTEiJ_P0086575 Rabep2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0086576.1 MGP_CASTEiJ_G0032005.1 mouse_genomes_project 7 122180901 122189755 + MGP_CASTEiJ_P0086576 Rabep2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086577.1 MGP_CASTEiJ_G0032005.1 mouse_genomes_project 7 122180947 122189746 + MGP_CASTEiJ_P0086577 Rabep2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086578.1 MGP_CASTEiJ_G0032005.1 mouse_genomes_project 7 122189514 122190082 + Rabep2 protein_coding retained_intron MGP_CASTEiJ_T0086579.1 MGP_CASTEiJ_G0032005.1 mouse_genomes_project 7 122191637 122197549 + Rabep2 protein_coding retained_intron MGP_CASTEiJ_T0086580.1 MGP_CASTEiJ_G0032005.1 mouse_genomes_project 7 122197664 122202134 + Rabep2 protein_coding retained_intron MGP_CASTEiJ_T0005100.1 MGP_CASTEiJ_G0004345.1 mouse_genomes_project 7 73377129 73378584 - Gm44949 antisense antisense MGP_CASTEiJ_T0081914.1 MGP_CASTEiJ_G0030755.1 mouse_genomes_project 7 10947697 10959911 - MGP_CASTEiJ_P0081914 C5ar2 protein_coding protein_coding MGP_CASTEiJ_T0081915.1 MGP_CASTEiJ_G0030755.1 mouse_genomes_project 7 10947697 10958077 - MGP_CASTEiJ_P0081915 C5ar2 protein_coding protein_coding MGP_CASTEiJ_T0087769.1 MGP_CASTEiJ_G0032261.1 mouse_genomes_project 7 138465759 138469880 + MGP_CASTEiJ_P0087769 Cd151 protein_coding protein_coding MGP_CASTEiJ_T0087770.1 MGP_CASTEiJ_G0032261.1 mouse_genomes_project 7 138465759 138469880 + MGP_CASTEiJ_P0087770 Cd151 protein_coding protein_coding MGP_CASTEiJ_T0087771.1 MGP_CASTEiJ_G0032261.1 mouse_genomes_project 7 138467186 138469880 + MGP_CASTEiJ_P0087771 Cd151 protein_coding protein_coding MGP_CASTEiJ_T0010584.1 MGP_CASTEiJ_G0008772.1 mouse_genomes_project 7 54545267 54545338 - Mir344g miRNA miRNA MGP_CASTEiJ_T0015227.1 MGP_CASTEiJ_G0013390.1 mouse_genomes_project 7 51775608 51776476 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0086046.1 MGP_CASTEiJ_G0031893.1 mouse_genomes_project 7 107231112 107276036 - MGP_CASTEiJ_P0086046 Dkk3 protein_coding protein_coding MGP_CASTEiJ_T0085570.1 MGP_CASTEiJ_G0031640.1 mouse_genomes_project 7 97328332 97329283 + MGP_CASTEiJ_P0085570 Olfr549 protein_coding protein_coding MGP_CASTEiJ_T0087158.1 MGP_CASTEiJ_G0032113.1 mouse_genomes_project 7 124626627 124671579 - MGP_CASTEiJ_P0087158 Mcmbp protein_coding protein_coding MGP_CASTEiJ_T0087159.1 MGP_CASTEiJ_G0032113.1 mouse_genomes_project 7 124627977 124671570 - MGP_CASTEiJ_P0087159 Mcmbp protein_coding protein_coding MGP_CASTEiJ_T0087160.1 MGP_CASTEiJ_G0032113.1 mouse_genomes_project 7 124628397 124629380 - Mcmbp protein_coding processed_transcript MGP_CASTEiJ_T0087161.1 MGP_CASTEiJ_G0032113.1 mouse_genomes_project 7 124629483 124632882 - Mcmbp protein_coding retained_intron MGP_CASTEiJ_T0087162.1 MGP_CASTEiJ_G0032113.1 mouse_genomes_project 7 124642539 124644793 - Mcmbp protein_coding retained_intron MGP_CASTEiJ_T0082695.1 MGP_CASTEiJ_G0030962.1 mouse_genomes_project 7 20119755 20143940 + MGP_CASTEiJ_P0082695 Zfp607b protein_coding protein_coding MGP_CASTEiJ_T0082991.1 MGP_CASTEiJ_G0031040.1 mouse_genomes_project 7 22787380 22802706 + MGP_CASTEiJ_P0082991 Gm5113 protein_coding protein_coding MGP_CASTEiJ_T0087276.1 MGP_CASTEiJ_G0032137.1 mouse_genomes_project 7 128210896 128320499 - MGP_CASTEiJ_P0087276 Cpxm2 protein_coding protein_coding MGP_CASTEiJ_T0087277.1 MGP_CASTEiJ_G0032137.1 mouse_genomes_project 7 128223027 128228239 - Cpxm2 protein_coding retained_intron MGP_CASTEiJ_T0087278.1 MGP_CASTEiJ_G0032137.1 mouse_genomes_project 7 128225473 128320382 - Cpxm2 protein_coding retained_intron MGP_CASTEiJ_T0087279.1 MGP_CASTEiJ_G0032137.1 mouse_genomes_project 7 128275591 128311376 - Cpxm2 protein_coding processed_transcript MGP_CASTEiJ_T0010585.1 MGP_CASTEiJ_G0008773.1 mouse_genomes_project 7 54614915 54614983 - Mir344f miRNA miRNA MGP_CASTEiJ_T0087350.1 MGP_CASTEiJ_G0032151.1 mouse_genomes_project 7 129982542 129993697 + MGP_CASTEiJ_P0087350 Bccip protein_coding protein_coding MGP_CASTEiJ_T0087351.1 MGP_CASTEiJ_G0032151.1 mouse_genomes_project 7 129982557 129988021 + Bccip protein_coding retained_intron MGP_CASTEiJ_T0087352.1 MGP_CASTEiJ_G0032151.1 mouse_genomes_project 7 129982611 129986897 + Bccip protein_coding processed_transcript MGP_CASTEiJ_T0087353.1 MGP_CASTEiJ_G0032151.1 mouse_genomes_project 7 129987311 129993493 + Bccip protein_coding processed_transcript MGP_CASTEiJ_T0087354.1 MGP_CASTEiJ_G0032151.1 mouse_genomes_project 7 129989936 129991784 + Bccip protein_coding retained_intron MGP_CASTEiJ_T0084115.1 MGP_CASTEiJ_G0031303.1 mouse_genomes_project 7 39378687 39383143 - MGP_CASTEiJ_P0084115 Saa4 protein_coding protein_coding MGP_CASTEiJ_T0084154.1 MGP_CASTEiJ_G0031311.1 mouse_genomes_project 7 39686320 39704427 - MGP_CASTEiJ_P0084154 Spty2d1 protein_coding protein_coding MGP_CASTEiJ_T0102548.1 MGP_CASTEiJ_G0039272.1 mouse_genomes_project 7 41512998 41513992 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0082663.1 MGP_CASTEiJ_G0030957.1 mouse_genomes_project 7 19925647 19948557 - MGP_CASTEiJ_P0082663 Pld3 protein_coding protein_coding MGP_CASTEiJ_T0082664.1 MGP_CASTEiJ_G0030957.1 mouse_genomes_project 7 19925647 19948551 - MGP_CASTEiJ_P0082664 Pld3 protein_coding protein_coding MGP_CASTEiJ_T0082665.1 MGP_CASTEiJ_G0030957.1 mouse_genomes_project 7 19925842 19926394 - Pld3 protein_coding retained_intron MGP_CASTEiJ_T0082666.1 MGP_CASTEiJ_G0030957.1 mouse_genomes_project 7 19927101 19933416 - Pld3 protein_coding retained_intron MGP_CASTEiJ_T0082667.1 MGP_CASTEiJ_G0030957.1 mouse_genomes_project 7 19935130 19948355 - MGP_CASTEiJ_P0082667 Pld3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082668.1 MGP_CASTEiJ_G0030957.1 mouse_genomes_project 7 19936687 19948523 - MGP_CASTEiJ_P0082668 Pld3 protein_coding protein_coding MGP_CASTEiJ_T0082669.1 MGP_CASTEiJ_G0030957.1 mouse_genomes_project 7 19937222 19938233 - MGP_CASTEiJ_P0082669 Pld3 protein_coding protein_coding MGP_CASTEiJ_T0082670.1 MGP_CASTEiJ_G0030957.1 mouse_genomes_project 7 19938303 19948490 - Pld3 protein_coding processed_transcript MGP_CASTEiJ_T0015109.1 MGP_CASTEiJ_G0013272.1 mouse_genomes_project 7 843750 844625 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085864.1 MGP_CASTEiJ_G0031822.1 mouse_genomes_project 7 102285644 102362989 + MGP_CASTEiJ_P0085864 Syt9 protein_coding protein_coding MGP_CASTEiJ_T0085865.1 MGP_CASTEiJ_G0031822.1 mouse_genomes_project 7 102285706 102478279 + MGP_CASTEiJ_P0085865 Syt9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085866.1 MGP_CASTEiJ_G0031822.1 mouse_genomes_project 7 102285706 102478282 + MGP_CASTEiJ_P0085866 Syt9 protein_coding protein_coding MGP_CASTEiJ_T0085867.1 MGP_CASTEiJ_G0031822.1 mouse_genomes_project 7 102427104 102478279 + Syt9 protein_coding retained_intron MGP_CASTEiJ_T0085868.1 MGP_CASTEiJ_G0031822.1 mouse_genomes_project 7 102427138 102478279 + Syt9 protein_coding retained_intron MGP_CASTEiJ_T0084918.1 MGP_CASTEiJ_G0031472.1 mouse_genomes_project 7 75445806 75471356 - MGP_CASTEiJ_P0084918 Bnc1 protein_coding protein_coding MGP_CASTEiJ_T0083341.1 MGP_CASTEiJ_G0031113.1 mouse_genomes_project 7 25413959 25422209 - protein_coding retained_intron MGP_CASTEiJ_T0083342.1 MGP_CASTEiJ_G0031113.1 mouse_genomes_project 7 25414006 25419740 - MGP_CASTEiJ_P0083342 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083343.1 MGP_CASTEiJ_G0031113.1 mouse_genomes_project 7 25414183 25425269 - MGP_CASTEiJ_P0083343 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083344.1 MGP_CASTEiJ_G0031113.1 mouse_genomes_project 7 25414489 25442719 - MGP_CASTEiJ_P0083344 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083345.1 MGP_CASTEiJ_G0031113.1 mouse_genomes_project 7 25414616 25418110 - protein_coding retained_intron MGP_CASTEiJ_T0083346.1 MGP_CASTEiJ_G0031113.1 mouse_genomes_project 7 25427257 25442725 - protein_coding retained_intron MGP_CASTEiJ_T0083347.1 MGP_CASTEiJ_G0031113.1 mouse_genomes_project 7 25439062 25442262 - protein_coding processed_transcript MGP_CASTEiJ_T0083348.1 MGP_CASTEiJ_G0031113.1 mouse_genomes_project 7 25441618 25442751 - protein_coding retained_intron MGP_CASTEiJ_T0015328.1 MGP_CASTEiJ_G0013491.1 mouse_genomes_project 7 127514093 127522577 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010525.1 MGP_CASTEiJ_G0008713.1 mouse_genomes_project 7 111242 111322 + Mir293 miRNA miRNA MGP_CASTEiJ_T0101277.1 MGP_CASTEiJ_G0038190.1 mouse_genomes_project 7 119847786 119847915 + Gm25759 snoRNA snoRNA MGP_CASTEiJ_T0010625.1 MGP_CASTEiJ_G0008813.1 mouse_genomes_project 7 138641655 138641746 + Mir7063 miRNA miRNA MGP_CASTEiJ_T0087382.1 MGP_CASTEiJ_G0032156.1 mouse_genomes_project 7 131005742 131715150 + MGP_CASTEiJ_P0087382 Dock1 protein_coding protein_coding MGP_CASTEiJ_T0087435.1 MGP_CASTEiJ_G0032175.1 mouse_genomes_project 7 136025033 136064421 + MGP_CASTEiJ_P0087435 Lrrc27 protein_coding protein_coding MGP_CASTEiJ_T0087436.1 MGP_CASTEiJ_G0032175.1 mouse_genomes_project 7 136025056 136032110 + MGP_CASTEiJ_P0087436 Lrrc27 protein_coding protein_coding MGP_CASTEiJ_T0087437.1 MGP_CASTEiJ_G0032175.1 mouse_genomes_project 7 136025317 136044939 + MGP_CASTEiJ_P0087437 Lrrc27 protein_coding protein_coding MGP_CASTEiJ_T0087438.1 MGP_CASTEiJ_G0032175.1 mouse_genomes_project 7 136026888 136035261 + MGP_CASTEiJ_P0087438 Lrrc27 protein_coding protein_coding MGP_CASTEiJ_T0087439.1 MGP_CASTEiJ_G0032175.1 mouse_genomes_project 7 136034429 136042079 + Lrrc27 protein_coding processed_transcript MGP_CASTEiJ_T0087440.1 MGP_CASTEiJ_G0032175.1 mouse_genomes_project 7 136034738 136042172 + Lrrc27 protein_coding retained_intron MGP_CASTEiJ_T0087441.1 MGP_CASTEiJ_G0032175.1 mouse_genomes_project 7 136051351 136064413 + Lrrc27 protein_coding processed_transcript MGP_CASTEiJ_T0087442.1 MGP_CASTEiJ_G0032175.1 mouse_genomes_project 7 136055679 136064414 + Lrrc27 protein_coding processed_transcript MGP_CASTEiJ_T0087443.1 MGP_CASTEiJ_G0032175.1 mouse_genomes_project 7 136058240 136064418 + Lrrc27 protein_coding processed_transcript MGP_CASTEiJ_T0086524.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121831554 121936751 - MGP_CASTEiJ_P0086524 Xpo6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0086525.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121833224 121937258 - MGP_CASTEiJ_P0086525 Xpo6 protein_coding protein_coding MGP_CASTEiJ_T0086526.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121833229 121893121 - Xpo6 protein_coding processed_transcript MGP_CASTEiJ_T0086527.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121833229 121841547 - Xpo6 protein_coding retained_intron MGP_CASTEiJ_T0086528.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121833229 121836302 - MGP_CASTEiJ_P0086528 Xpo6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086529.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121833242 121838658 - MGP_CASTEiJ_P0086529 Xpo6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086530.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121833577 121836514 - Xpo6 protein_coding retained_intron MGP_CASTEiJ_T0086531.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121833854 121838621 - MGP_CASTEiJ_P0086531 Xpo6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086532.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121836250 121844462 - MGP_CASTEiJ_P0086532 Xpo6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086533.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121840016 121844394 - MGP_CASTEiJ_P0086533 Xpo6 protein_coding protein_coding MGP_CASTEiJ_T0086534.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121844467 121873111 - MGP_CASTEiJ_P0086534 Xpo6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086535.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121851076 121937272 - Xpo6 protein_coding retained_intron MGP_CASTEiJ_T0086536.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121860803 121885262 - MGP_CASTEiJ_P0086536 Xpo6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086537.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121873091 121893262 - MGP_CASTEiJ_P0086537 Xpo6 protein_coding protein_coding MGP_CASTEiJ_T0086538.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121881518 121893270 - Xpo6 protein_coding processed_transcript MGP_CASTEiJ_T0086539.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121883909 121937192 - Xpo6 protein_coding processed_transcript MGP_CASTEiJ_T0086540.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121893257 121936778 - MGP_CASTEiJ_P0086540 Xpo6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086541.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121904138 121918048 - Xpo6 protein_coding processed_transcript MGP_CASTEiJ_T0086542.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121904138 121937263 - MGP_CASTEiJ_P0086542 Xpo6 protein_coding protein_coding MGP_CASTEiJ_T0086543.1 MGP_CASTEiJ_G0031999.1 mouse_genomes_project 7 121916169 121923284 - Xpo6 protein_coding retained_intron MGP_CASTEiJ_T0005025.1 MGP_CASTEiJ_G0004291.1 mouse_genomes_project 7 16259950 16265036 - Gm44793 antisense antisense MGP_CASTEiJ_T0082025.1 MGP_CASTEiJ_G0030788.1 mouse_genomes_project 7 12752249 12758125 + MGP_CASTEiJ_P0082025 Ceacam12 protein_coding protein_coding MGP_CASTEiJ_T0082026.1 MGP_CASTEiJ_G0030788.1 mouse_genomes_project 7 12752259 12760828 + MGP_CASTEiJ_P0082026 Ceacam12 protein_coding protein_coding MGP_CASTEiJ_T0082027.1 MGP_CASTEiJ_G0030788.1 mouse_genomes_project 7 12752311 12756745 + MGP_CASTEiJ_P0082027 Ceacam12 protein_coding protein_coding MGP_CASTEiJ_T0084202.1 MGP_CASTEiJ_G0031330.1 mouse_genomes_project 7 42507190 42512509 - MGP_CASTEiJ_P0084202 Dbx1 protein_coding protein_coding MGP_CASTEiJ_T0083994.1 MGP_CASTEiJ_G0031270.1 mouse_genomes_project 7 38201363 38214389 + MGP_CASTEiJ_P0083994 Rasip1 protein_coding protein_coding MGP_CASTEiJ_T0082262.1 MGP_CASTEiJ_G0030861.1 mouse_genomes_project 7 16259812 16275795 + MGP_CASTEiJ_P0082262 Zfp112 protein_coding protein_coding MGP_CASTEiJ_T0082263.1 MGP_CASTEiJ_G0030861.1 mouse_genomes_project 7 16259820 16275336 + MGP_CASTEiJ_P0082263 Zfp112 protein_coding protein_coding MGP_CASTEiJ_T0082264.1 MGP_CASTEiJ_G0030861.1 mouse_genomes_project 7 16259856 16262926 + Zfp112 protein_coding retained_intron MGP_CASTEiJ_T0082265.1 MGP_CASTEiJ_G0030861.1 mouse_genomes_project 7 16259871 16275079 + MGP_CASTEiJ_P0082265 Zfp112 protein_coding unknown_likely_coding MGP_CASTEiJ_T0081741.1 MGP_CASTEiJ_G0030701.1 mouse_genomes_project 7 7346232 7347159 + MGP_CASTEiJ_P0081741 Vmn1r80 protein_coding protein_coding MGP_CASTEiJ_T0082239.1 MGP_CASTEiJ_G0030846.1 mouse_genomes_project 7 14747019 14759925 - MGP_CASTEiJ_P0082239 Ceacam19 protein_coding protein_coding MGP_CASTEiJ_T0087522.1 MGP_CASTEiJ_G0032195.1 mouse_genomes_project 7 137067792 137068868 - MGP_CASTEiJ_P0087522 Olfr522 protein_coding protein_coding MGP_CASTEiJ_T0101821.1 MGP_CASTEiJ_G0038582.1 mouse_genomes_project 7 12351520 12361281 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101822.1 MGP_CASTEiJ_G0038582.1 mouse_genomes_project 7 12351520 12360912 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0084134.1 MGP_CASTEiJ_G0031306.1 mouse_genomes_project 7 39521210 39533365 + MGP_CASTEiJ_P0084134 Ldha protein_coding protein_coding MGP_CASTEiJ_T0084135.1 MGP_CASTEiJ_G0031306.1 mouse_genomes_project 7 39527394 39536971 + MGP_CASTEiJ_P0084135 Ldha protein_coding protein_coding MGP_CASTEiJ_T0084136.1 MGP_CASTEiJ_G0031306.1 mouse_genomes_project 7 39527398 39530612 + Ldha protein_coding processed_transcript MGP_CASTEiJ_T0084137.1 MGP_CASTEiJ_G0031306.1 mouse_genomes_project 7 39527398 39529698 + Ldha protein_coding retained_intron MGP_CASTEiJ_T0084138.1 MGP_CASTEiJ_G0031306.1 mouse_genomes_project 7 39527418 39533374 + MGP_CASTEiJ_P0084138 Ldha protein_coding protein_coding MGP_CASTEiJ_T0084139.1 MGP_CASTEiJ_G0031306.1 mouse_genomes_project 7 39527651 39530618 + Ldha protein_coding processed_transcript MGP_CASTEiJ_T0084140.1 MGP_CASTEiJ_G0031306.1 mouse_genomes_project 7 39528688 39536970 + MGP_CASTEiJ_P0084140 Ldha protein_coding protein_coding MGP_CASTEiJ_T0084141.1 MGP_CASTEiJ_G0031306.1 mouse_genomes_project 7 39529062 39532368 + Ldha protein_coding retained_intron MGP_CASTEiJ_T0083073.1 MGP_CASTEiJ_G0031060.1 mouse_genomes_project 7 23137767 23157275 + MGP_CASTEiJ_P0083073 Prodh2 protein_coding protein_coding MGP_CASTEiJ_T0083074.1 MGP_CASTEiJ_G0031060.1 mouse_genomes_project 7 23137803 23152660 + Prodh2 protein_coding processed_transcript MGP_CASTEiJ_T0083075.1 MGP_CASTEiJ_G0031060.1 mouse_genomes_project 7 23137803 23150456 + MGP_CASTEiJ_P0083075 Prodh2 protein_coding protein_coding MGP_CASTEiJ_T0083076.1 MGP_CASTEiJ_G0031060.1 mouse_genomes_project 7 23137804 23138433 + Prodh2 protein_coding retained_intron MGP_CASTEiJ_T0083077.1 MGP_CASTEiJ_G0031060.1 mouse_genomes_project 7 23137804 23150684 + MGP_CASTEiJ_P0083077 Prodh2 protein_coding protein_coding MGP_CASTEiJ_T0083078.1 MGP_CASTEiJ_G0031060.1 mouse_genomes_project 7 23137826 23150545 + MGP_CASTEiJ_P0083078 Prodh2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083079.1 MGP_CASTEiJ_G0031060.1 mouse_genomes_project 7 23137925 23150752 + MGP_CASTEiJ_P0083079 Prodh2 protein_coding protein_coding MGP_CASTEiJ_T0083080.1 MGP_CASTEiJ_G0031060.1 mouse_genomes_project 7 23150783 23156911 + MGP_CASTEiJ_P0083080 Prodh2 protein_coding protein_coding MGP_CASTEiJ_T0086949.1 MGP_CASTEiJ_G0032073.1 mouse_genomes_project 7 123444674 123461505 + MGP_CASTEiJ_P0086949 Rnf40 protein_coding protein_coding MGP_CASTEiJ_T0086950.1 MGP_CASTEiJ_G0032073.1 mouse_genomes_project 7 123444826 123460300 + MGP_CASTEiJ_P0086950 Rnf40 protein_coding protein_coding MGP_CASTEiJ_T0086951.1 MGP_CASTEiJ_G0032073.1 mouse_genomes_project 7 123444826 123460291 + MGP_CASTEiJ_P0086951 Rnf40 protein_coding protein_coding MGP_CASTEiJ_T0086952.1 MGP_CASTEiJ_G0032073.1 mouse_genomes_project 7 123449181 123451493 + Rnf40 protein_coding retained_intron MGP_CASTEiJ_T0086953.1 MGP_CASTEiJ_G0032073.1 mouse_genomes_project 7 123449642 123452999 + Rnf40 protein_coding retained_intron MGP_CASTEiJ_T0086954.1 MGP_CASTEiJ_G0032073.1 mouse_genomes_project 7 123453579 123457310 + Rnf40 protein_coding retained_intron MGP_CASTEiJ_T0083775.1 MGP_CASTEiJ_G0031214.1 mouse_genomes_project 7 37266884 37281428 + MGP_CASTEiJ_P0083775 Il4i1 protein_coding protein_coding MGP_CASTEiJ_T0083776.1 MGP_CASTEiJ_G0031214.1 mouse_genomes_project 7 37267168 37291674 + MGP_CASTEiJ_P0083776 Il4i1 protein_coding protein_coding MGP_CASTEiJ_T0083777.1 MGP_CASTEiJ_G0031214.1 mouse_genomes_project 7 37267185 37283569 + Il4i1 protein_coding processed_transcript MGP_CASTEiJ_T0083778.1 MGP_CASTEiJ_G0031214.1 mouse_genomes_project 7 37287157 37291679 + MGP_CASTEiJ_P0083778 Il4i1 protein_coding protein_coding MGP_CASTEiJ_T0083779.1 MGP_CASTEiJ_G0031214.1 mouse_genomes_project 7 37287161 37289167 + Il4i1 protein_coding retained_intron MGP_CASTEiJ_T0083780.1 MGP_CASTEiJ_G0031214.1 mouse_genomes_project 7 37289561 37290651 + Il4i1 protein_coding retained_intron MGP_CASTEiJ_T0083781.1 MGP_CASTEiJ_G0031214.1 mouse_genomes_project 7 37290067 37290638 + MGP_CASTEiJ_P0083781 Il4i1 protein_coding protein_coding MGP_CASTEiJ_T0085081.1 MGP_CASTEiJ_G0031537.1 mouse_genomes_project 7 85244488 86683162 + MGP_CASTEiJ_P0085081 Dlg2 protein_coding protein_coding MGP_CASTEiJ_T0085082.1 MGP_CASTEiJ_G0031537.1 mouse_genomes_project 7 85244508 86523814 + Dlg2 protein_coding processed_transcript MGP_CASTEiJ_T0085083.1 MGP_CASTEiJ_G0031537.1 mouse_genomes_project 7 85244510 86683162 + MGP_CASTEiJ_P0085083 Dlg2 protein_coding protein_coding MGP_CASTEiJ_T0085084.1 MGP_CASTEiJ_G0031537.1 mouse_genomes_project 7 85877459 86220397 + Dlg2 protein_coding retained_intron MGP_CASTEiJ_T0085085.1 MGP_CASTEiJ_G0031537.1 mouse_genomes_project 7 85928146 86683162 + MGP_CASTEiJ_P0085085 Dlg2 protein_coding protein_coding MGP_CASTEiJ_T0085086.1 MGP_CASTEiJ_G0031537.1 mouse_genomes_project 7 85928400 86161505 + Dlg2 protein_coding processed_transcript MGP_CASTEiJ_T0085087.1 MGP_CASTEiJ_G0031537.1 mouse_genomes_project 7 85928402 86358684 + MGP_CASTEiJ_P0085087 Dlg2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085088.1 MGP_CASTEiJ_G0031537.1 mouse_genomes_project 7 86294807 86683162 + MGP_CASTEiJ_P0085088 Dlg2 protein_coding protein_coding MGP_CASTEiJ_T0085089.1 MGP_CASTEiJ_G0031537.1 mouse_genomes_project 7 86418666 86525531 + Dlg2 protein_coding retained_intron MGP_CASTEiJ_T0085090.1 MGP_CASTEiJ_G0031537.1 mouse_genomes_project 7 86471947 86682642 + Dlg2 protein_coding processed_transcript MGP_CASTEiJ_T0085091.1 MGP_CASTEiJ_G0031537.1 mouse_genomes_project 7 86472151 86666311 + Dlg2 protein_coding processed_transcript MGP_CASTEiJ_T0008772.1 MGP_CASTEiJ_G0007080.1 mouse_genomes_project 7 116193063 116197140 - 9030407P20Rik lincRNA lincRNA MGP_CASTEiJ_T0008773.1 MGP_CASTEiJ_G0007080.1 mouse_genomes_project 7 116193359 116197180 - 9030407P20Rik lincRNA lincRNA MGP_CASTEiJ_T0010608.1 MGP_CASTEiJ_G0008796.1 mouse_genomes_project 7 110426070 110426150 + Gm27684 miRNA miRNA MGP_CASTEiJ_T0085566.1 MGP_CASTEiJ_G0031636.1 mouse_genomes_project 7 97244504 97245634 - MGP_CASTEiJ_P0085566 Olfr543 protein_coding protein_coding MGP_CASTEiJ_T0083942.1 MGP_CASTEiJ_G0031259.1 mouse_genomes_project 7 38001627 38006814 - MGP_CASTEiJ_P0083942 Bax protein_coding protein_coding MGP_CASTEiJ_T0085896.1 MGP_CASTEiJ_G0031848.1 mouse_genomes_project 7 103475138 103476095 - MGP_CASTEiJ_P0085896 Olfr504 protein_coding protein_coding MGP_CASTEiJ_T0100015.1 MGP_CASTEiJ_G0036928.1 mouse_genomes_project 7 68777246 68777330 + Gm25282 snRNA snRNA MGP_CASTEiJ_T0087163.1 MGP_CASTEiJ_G0032114.1 mouse_genomes_project 7 124676603 124719697 + MGP_CASTEiJ_P0087163 Sec23ip protein_coding protein_coding MGP_CASTEiJ_T0087164.1 MGP_CASTEiJ_G0032114.1 mouse_genomes_project 7 124676637 124683187 + Sec23ip protein_coding retained_intron MGP_CASTEiJ_T0087165.1 MGP_CASTEiJ_G0032114.1 mouse_genomes_project 7 124676695 124687763 + MGP_CASTEiJ_P0087165 Sec23ip protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087166.1 MGP_CASTEiJ_G0032114.1 mouse_genomes_project 7 124677080 124683985 + MGP_CASTEiJ_P0087166 Sec23ip protein_coding protein_coding MGP_CASTEiJ_T0102533.1 MGP_CASTEiJ_G0039257.1 mouse_genomes_project 7 40250548 40792665 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015304.1 MGP_CASTEiJ_G0013467.1 mouse_genomes_project 7 118519380 118519707 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0086809.1 MGP_CASTEiJ_G0032043.1 mouse_genomes_project 7 122812828 122816517 - MGP_CASTEiJ_P0086809 Prrt2 protein_coding protein_coding MGP_CASTEiJ_T0086810.1 MGP_CASTEiJ_G0032043.1 mouse_genomes_project 7 122812840 122816280 - Prrt2 protein_coding retained_intron MGP_CASTEiJ_T0086811.1 MGP_CASTEiJ_G0032043.1 mouse_genomes_project 7 122812945 122815202 - MGP_CASTEiJ_P0086811 Prrt2 protein_coding protein_coding MGP_CASTEiJ_T0086812.1 MGP_CASTEiJ_G0032043.1 mouse_genomes_project 7 122813457 122814895 - MGP_CASTEiJ_P0086812 Prrt2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086813.1 MGP_CASTEiJ_G0032043.1 mouse_genomes_project 7 122813806 122816262 - Prrt2 protein_coding processed_transcript MGP_CASTEiJ_T0086814.1 MGP_CASTEiJ_G0032043.1 mouse_genomes_project 7 122814003 122816443 - MGP_CASTEiJ_P0086814 Prrt2 protein_coding protein_coding MGP_CASTEiJ_T0086815.1 MGP_CASTEiJ_G0032043.1 mouse_genomes_project 7 122814694 122815661 - Prrt2 protein_coding processed_transcript MGP_CASTEiJ_T0082034.1 MGP_CASTEiJ_G0030792.1 mouse_genomes_project 7 13584338 13655596 - MGP_CASTEiJ_P0082034 Ccdc61 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082039.1 MGP_CASTEiJ_G0030792.1 mouse_genomes_project 7 13632586 13633101 - Ccdc61 protein_coding retained_intron MGP_CASTEiJ_T0082040.1 MGP_CASTEiJ_G0030792.1 mouse_genomes_project 7 13632586 13655851 - MGP_CASTEiJ_P0082040 Ccdc61 protein_coding protein_coding MGP_CASTEiJ_T0082041.1 MGP_CASTEiJ_G0030792.1 mouse_genomes_project 7 13632587 13655834 - MGP_CASTEiJ_P0082041 Ccdc61 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082042.1 MGP_CASTEiJ_G0030792.1 mouse_genomes_project 7 13632587 13634280 - MGP_CASTEiJ_P0082042 Ccdc61 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082043.1 MGP_CASTEiJ_G0030792.1 mouse_genomes_project 7 13632708 13636977 - MGP_CASTEiJ_P0082043 Ccdc61 protein_coding protein_coding MGP_CASTEiJ_T0082044.1 MGP_CASTEiJ_G0030792.1 mouse_genomes_project 7 13633352 13634086 - Ccdc61 protein_coding retained_intron MGP_CASTEiJ_T0082045.1 MGP_CASTEiJ_G0030792.1 mouse_genomes_project 7 13642492 13655834 - MGP_CASTEiJ_P0082045 Ccdc61 protein_coding protein_coding MGP_CASTEiJ_T0082046.1 MGP_CASTEiJ_G0030792.1 mouse_genomes_project 7 13643923 13655825 - MGP_CASTEiJ_P0082046 Ccdc61 protein_coding protein_coding MGP_CASTEiJ_T0085839.1 MGP_CASTEiJ_G0031799.1 mouse_genomes_project 7 101715157 101716108 - MGP_CASTEiJ_P0085839 Olfr699 protein_coding protein_coding MGP_CASTEiJ_T0102543.1 MGP_CASTEiJ_G0039267.1 mouse_genomes_project 7 41164845 41165427 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015217.1 MGP_CASTEiJ_G0013380.1 mouse_genomes_project 7 44250937 44251055 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008619.1 MGP_CASTEiJ_G0006979.1 mouse_genomes_project 7 29600182 29613511 - Gm45106 lincRNA lincRNA MGP_CASTEiJ_T0008630.1 MGP_CASTEiJ_G0006985.1 mouse_genomes_project 7 31992085 32085923 - Gm28807 lincRNA lincRNA MGP_CASTEiJ_T0015271.1 MGP_CASTEiJ_G0013434.1 mouse_genomes_project 7 91807212 91807400 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0086801.1 MGP_CASTEiJ_G0032042.1 mouse_genomes_project 7 122810356 122812656 - MGP_CASTEiJ_P0086801 protein_coding protein_coding MGP_CASTEiJ_T0086802.1 MGP_CASTEiJ_G0032042.1 mouse_genomes_project 7 122810370 122815633 - protein_coding retained_intron MGP_CASTEiJ_T0086806.1 MGP_CASTEiJ_G0032042.1 mouse_genomes_project 7 122811534 122816403 - protein_coding processed_transcript MGP_CASTEiJ_T0086807.1 MGP_CASTEiJ_G0032042.1 mouse_genomes_project 7 122811537 122816345 - MGP_CASTEiJ_P0086807 protein_coding protein_coding MGP_CASTEiJ_T0086808.1 MGP_CASTEiJ_G0032042.1 mouse_genomes_project 7 122812074 122816395 - protein_coding processed_transcript MGP_CASTEiJ_T0008752.1 MGP_CASTEiJ_G0007069.1 mouse_genomes_project 7 103883590 103896098 - Gm26599 lincRNA lincRNA MGP_CASTEiJ_T0008603.1 MGP_CASTEiJ_G0006964.1 mouse_genomes_project 7 25771168 25784283 + Gm12784 lincRNA lincRNA MGP_CASTEiJ_T0008604.1 MGP_CASTEiJ_G0006964.1 mouse_genomes_project 7 25773873 25814442 + Gm12784 lincRNA lincRNA MGP_CASTEiJ_T0083838.1 MGP_CASTEiJ_G0031229.1 mouse_genomes_project 7 37482703 37488274 + MGP_CASTEiJ_P0083838 Rras protein_coding unknown_likely_coding MGP_CASTEiJ_T0085903.1 MGP_CASTEiJ_G0031855.1 mouse_genomes_project 7 103685684 103686620 + MGP_CASTEiJ_P0085903 Olfr513 protein_coding protein_coding MGP_CASTEiJ_T0082649.1 MGP_CASTEiJ_G0030952.1 mouse_genomes_project 7 19837037 19855955 + MGP_CASTEiJ_P0082649 Blvrb protein_coding protein_coding MGP_CASTEiJ_T0082650.1 MGP_CASTEiJ_G0030952.1 mouse_genomes_project 7 19837091 19855809 + MGP_CASTEiJ_P0082650 Blvrb protein_coding protein_coding MGP_CASTEiJ_T0082651.1 MGP_CASTEiJ_G0030952.1 mouse_genomes_project 7 19837113 19848822 + MGP_CASTEiJ_P0082651 Blvrb protein_coding protein_coding MGP_CASTEiJ_T0082652.1 MGP_CASTEiJ_G0030952.1 mouse_genomes_project 7 19841500 19855795 + MGP_CASTEiJ_P0082652 Blvrb protein_coding protein_coding MGP_CASTEiJ_T0082653.1 MGP_CASTEiJ_G0030952.1 mouse_genomes_project 7 19841526 19852552 + Blvrb protein_coding processed_transcript MGP_CASTEiJ_T0008669.1 MGP_CASTEiJ_G0007012.1 mouse_genomes_project 7 63084124 63084928 - Gm29327 lincRNA lincRNA MGP_CASTEiJ_T0002231.1 MGP_CASTEiJ_G0002150.1 mouse_genomes_project 7 120781824 120784301 - TEC TEC MGP_CASTEiJ_T0081766.1 MGP_CASTEiJ_G0030713.1 mouse_genomes_project 7 8023318 8033633 + MGP_CASTEiJ_P0081766 Zscan22 protein_coding protein_coding MGP_CASTEiJ_T0081767.1 MGP_CASTEiJ_G0030713.1 mouse_genomes_project 7 8023339 8034480 + MGP_CASTEiJ_P0081767 Zscan22 protein_coding protein_coding MGP_CASTEiJ_T0081768.1 MGP_CASTEiJ_G0030713.1 mouse_genomes_project 7 8023344 8032931 + MGP_CASTEiJ_P0081768 Zscan22 protein_coding protein_coding MGP_CASTEiJ_T0081769.1 MGP_CASTEiJ_G0030713.1 mouse_genomes_project 7 8023370 8033636 + MGP_CASTEiJ_P0081769 Zscan22 protein_coding protein_coding MGP_CASTEiJ_T0008761.1 MGP_CASTEiJ_G0007075.1 mouse_genomes_project 7 110198531 110236225 + A730082K24Rik lincRNA lincRNA MGP_CASTEiJ_T0008762.1 MGP_CASTEiJ_G0007075.1 mouse_genomes_project 7 110198569 110209011 + A730082K24Rik lincRNA lincRNA MGP_CASTEiJ_T0008763.1 MGP_CASTEiJ_G0007075.1 mouse_genomes_project 7 110200683 110227343 + A730082K24Rik lincRNA lincRNA MGP_CASTEiJ_T0008764.1 MGP_CASTEiJ_G0007075.1 mouse_genomes_project 7 110200698 110227309 + A730082K24Rik lincRNA lincRNA MGP_CASTEiJ_T0008765.1 MGP_CASTEiJ_G0007075.1 mouse_genomes_project 7 110200716 110234593 + A730082K24Rik lincRNA lincRNA MGP_CASTEiJ_T0086776.1 MGP_CASTEiJ_G0032035.1 mouse_genomes_project 7 122717203 122735118 + MGP_CASTEiJ_P0086776 Kctd13 protein_coding protein_coding MGP_CASTEiJ_T0086777.1 MGP_CASTEiJ_G0032035.1 mouse_genomes_project 7 122718247 122730855 + Kctd13 protein_coding retained_intron MGP_CASTEiJ_T0086778.1 MGP_CASTEiJ_G0032035.1 mouse_genomes_project 7 122731533 122734451 + Kctd13 protein_coding retained_intron MGP_CASTEiJ_T0088013.1 MGP_CASTEiJ_G0032307.1 mouse_genomes_project 7 141603703 141640548 - MGP_CASTEiJ_P0088013 Cttn protein_coding protein_coding MGP_CASTEiJ_T0088014.1 MGP_CASTEiJ_G0032307.1 mouse_genomes_project 7 141605958 141616992 - Cttn protein_coding retained_intron MGP_CASTEiJ_T0088015.1 MGP_CASTEiJ_G0032307.1 mouse_genomes_project 7 141607191 141613073 - Cttn protein_coding processed_transcript MGP_CASTEiJ_T0088016.1 MGP_CASTEiJ_G0032307.1 mouse_genomes_project 7 141612970 141619804 - Cttn protein_coding processed_transcript MGP_CASTEiJ_T0088017.1 MGP_CASTEiJ_G0032307.1 mouse_genomes_project 7 141623704 141628014 - Cttn protein_coding processed_transcript MGP_CASTEiJ_T0084012.1 MGP_CASTEiJ_G0031277.1 mouse_genomes_project 7 38292051 38300591 - MGP_CASTEiJ_P0084012 Sphk2 protein_coding protein_coding MGP_CASTEiJ_T0084013.1 MGP_CASTEiJ_G0031277.1 mouse_genomes_project 7 38292851 38300491 - MGP_CASTEiJ_P0084013 Sphk2 protein_coding protein_coding MGP_CASTEiJ_T0084014.1 MGP_CASTEiJ_G0031277.1 mouse_genomes_project 7 38292869 38297795 - MGP_CASTEiJ_P0084014 Sphk2 protein_coding protein_coding MGP_CASTEiJ_T0083843.1 MGP_CASTEiJ_G0031233.1 mouse_genomes_project 7 37560299 37569610 - MGP_CASTEiJ_P0083843 Rcn3 protein_coding protein_coding MGP_CASTEiJ_T0017665.1 MGP_CASTEiJ_G0015005.1 mouse_genomes_project 7 122547341 122560872 - Gm9967 processed_transcript antisense MGP_CASTEiJ_T0017666.1 MGP_CASTEiJ_G0015005.1 mouse_genomes_project 7 122556387 122560860 - Gm9967 processed_transcript antisense MGP_CASTEiJ_T0017667.1 MGP_CASTEiJ_G0015005.1 mouse_genomes_project 7 122559032 122560912 - Gm9967 processed_transcript retained_intron MGP_CASTEiJ_T0099997.1 MGP_CASTEiJ_G0036910.1 mouse_genomes_project 7 13184408 13184515 + Gm26062 snRNA snRNA MGP_CASTEiJ_T0099004.1 MGP_CASTEiJ_G0035924.1 mouse_genomes_project 7 3359305 3359854 + Gm16306 sense_intronic sense_intronic MGP_CASTEiJ_T0081939.1 MGP_CASTEiJ_G0030763.1 mouse_genomes_project 7 11198106 11221292 - MGP_CASTEiJ_P0081939 Npas1 protein_coding protein_coding MGP_CASTEiJ_T0010555.1 MGP_CASTEiJ_G0008743.1 mouse_genomes_project 7 23735787 23735847 - Mir7050 miRNA miRNA MGP_CASTEiJ_T0098397.1 MGP_CASTEiJ_G0035328.1 mouse_genomes_project 7 87350724 87352560 + pseudogene pseudogene MGP_CASTEiJ_T0005164.1 MGP_CASTEiJ_G0004391.1 mouse_genomes_project 7 128811419 128813686 + Gm16764 antisense antisense MGP_CASTEiJ_T0005165.1 MGP_CASTEiJ_G0004391.1 mouse_genomes_project 7 128811419 128813686 + Gm16764 antisense antisense MGP_CASTEiJ_T0005166.1 MGP_CASTEiJ_G0004391.1 mouse_genomes_project 7 128811435 128813686 + Gm16764 antisense antisense MGP_CASTEiJ_T0005084.1 MGP_CASTEiJ_G0004334.1 mouse_genomes_project 7 65058941 65061625 + Gm45107 antisense antisense MGP_CASTEiJ_T0008702.1 MGP_CASTEiJ_G0007040.1 mouse_genomes_project 7 72008622 72010995 + 5330411O13Rik lincRNA lincRNA MGP_CASTEiJ_T0100031.1 MGP_CASTEiJ_G0036944.1 mouse_genomes_project 7 104751406 104751513 - Gm22822 snRNA snRNA MGP_CASTEiJ_T0085906.1 MGP_CASTEiJ_G0031858.1 mouse_genomes_project 7 103797440 103798495 - MGP_CASTEiJ_P0085906 Olfr517 protein_coding protein_coding MGP_CASTEiJ_T0085162.1 MGP_CASTEiJ_G0031554.1 mouse_genomes_project 7 91953417 91993514 - MGP_CASTEiJ_P0085162 Aamdc protein_coding protein_coding MGP_CASTEiJ_T0085163.1 MGP_CASTEiJ_G0031554.1 mouse_genomes_project 7 91957764 91989674 - MGP_CASTEiJ_P0085163 Aamdc protein_coding protein_coding MGP_CASTEiJ_T0085164.1 MGP_CASTEiJ_G0031554.1 mouse_genomes_project 7 91957767 91993502 - MGP_CASTEiJ_P0085164 Aamdc protein_coding protein_coding MGP_CASTEiJ_T0085165.1 MGP_CASTEiJ_G0031554.1 mouse_genomes_project 7 91957773 91993421 - MGP_CASTEiJ_P0085165 Aamdc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085166.1 MGP_CASTEiJ_G0031554.1 mouse_genomes_project 7 91957780 91993509 - Aamdc protein_coding processed_transcript MGP_CASTEiJ_T0085167.1 MGP_CASTEiJ_G0031554.1 mouse_genomes_project 7 91957785 91993520 - MGP_CASTEiJ_P0085167 Aamdc protein_coding protein_coding MGP_CASTEiJ_T0085168.1 MGP_CASTEiJ_G0031554.1 mouse_genomes_project 7 91957975 91993464 - MGP_CASTEiJ_P0085168 Aamdc protein_coding protein_coding MGP_CASTEiJ_T0085169.1 MGP_CASTEiJ_G0031554.1 mouse_genomes_project 7 91957981 91993465 - MGP_CASTEiJ_P0085169 Aamdc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085170.1 MGP_CASTEiJ_G0031554.1 mouse_genomes_project 7 91957998 91993497 - MGP_CASTEiJ_P0085170 Aamdc protein_coding protein_coding MGP_CASTEiJ_T0085171.1 MGP_CASTEiJ_G0031554.1 mouse_genomes_project 7 91958103 91993442 - MGP_CASTEiJ_P0085171 Aamdc protein_coding protein_coding MGP_CASTEiJ_T0085172.1 MGP_CASTEiJ_G0031554.1 mouse_genomes_project 7 91958148 91993405 - MGP_CASTEiJ_P0085172 Aamdc protein_coding protein_coding MGP_CASTEiJ_T0085173.1 MGP_CASTEiJ_G0031554.1 mouse_genomes_project 7 91989920 91992248 - Aamdc protein_coding retained_intron MGP_CASTEiJ_T0081718.1 MGP_CASTEiJ_G0030682.1 mouse_genomes_project 7 4119736 4129215 - MGP_CASTEiJ_P0081718 Zfp773 protein_coding protein_coding MGP_CASTEiJ_T0087284.1 MGP_CASTEiJ_G0032140.1 mouse_genomes_project 7 128808989 128813686 - MGP_CASTEiJ_P0087284 Nkx1-2 protein_coding protein_coding MGP_CASTEiJ_T0081998.1 MGP_CASTEiJ_G0030777.1 mouse_genomes_project 7 11746315 11753310 + MGP_CASTEiJ_P0081998 Pnmal1 protein_coding protein_coding MGP_CASTEiJ_T0002219.1 MGP_CASTEiJ_G0002138.1 mouse_genomes_project 7 114980276 114984246 + TEC TEC MGP_CASTEiJ_T0101242.1 MGP_CASTEiJ_G0038155.1 mouse_genomes_project 7 52153704 52153792 - Gm22496 snoRNA snoRNA MGP_CASTEiJ_T0082240.1 MGP_CASTEiJ_G0030847.1 mouse_genomes_project 7 14775460 14793231 - MGP_CASTEiJ_P0082240 Pvr protein_coding protein_coding MGP_CASTEiJ_T0082241.1 MGP_CASTEiJ_G0030847.1 mouse_genomes_project 7 14776948 14781260 - Pvr protein_coding retained_intron MGP_CASTEiJ_T0082242.1 MGP_CASTEiJ_G0030847.1 mouse_genomes_project 7 14787813 14793184 - Pvr protein_coding retained_intron MGP_CASTEiJ_T0082243.1 MGP_CASTEiJ_G0030847.1 mouse_genomes_project 7 14789315 14793184 - Pvr protein_coding retained_intron MGP_CASTEiJ_T0082572.1 MGP_CASTEiJ_G0030936.1 mouse_genomes_project 7 19462067 19478440 + MGP_CASTEiJ_P0082572 Cyp2f2 protein_coding protein_coding MGP_CASTEiJ_T0082573.1 MGP_CASTEiJ_G0030936.1 mouse_genomes_project 7 19462119 19470246 + Cyp2f2 protein_coding processed_transcript MGP_CASTEiJ_T0082574.1 MGP_CASTEiJ_G0030936.1 mouse_genomes_project 7 19464818 19476014 + MGP_CASTEiJ_P0082574 Cyp2f2 protein_coding protein_coding MGP_CASTEiJ_T0102521.1 MGP_CASTEiJ_G0039245.1 mouse_genomes_project 7 36273070 36275295 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0084067.1 MGP_CASTEiJ_G0031291.1 mouse_genomes_project 7 38577113 38631246 - MGP_CASTEiJ_P0084067 Abcc6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084068.1 MGP_CASTEiJ_G0031291.1 mouse_genomes_project 7 38582892 38642418 - MGP_CASTEiJ_P0084068 Abcc6 protein_coding protein_coding MGP_CASTEiJ_T0084069.1 MGP_CASTEiJ_G0031291.1 mouse_genomes_project 7 38583408 38584199 - Abcc6 protein_coding retained_intron MGP_CASTEiJ_T0084070.1 MGP_CASTEiJ_G0031291.1 mouse_genomes_project 7 38606353 38610776 - Abcc6 protein_coding retained_intron MGP_CASTEiJ_T0010547.1 MGP_CASTEiJ_G0008735.1 mouse_genomes_project 7 21064097 21064157 - Mir7049 miRNA miRNA MGP_CASTEiJ_T0082757.1 MGP_CASTEiJ_G0030984.1 mouse_genomes_project 7 20860473 20862943 - MGP_CASTEiJ_P0082757 Zfp36 protein_coding protein_coding MGP_CASTEiJ_T0087922.1 MGP_CASTEiJ_G0032288.1 mouse_genomes_project 7 140099472 140113841 + MGP_CASTEiJ_P0087922 Tspan32 protein_coding protein_coding MGP_CASTEiJ_T0087923.1 MGP_CASTEiJ_G0032288.1 mouse_genomes_project 7 140099486 140101910 + Tspan32 protein_coding retained_intron MGP_CASTEiJ_T0087924.1 MGP_CASTEiJ_G0032288.1 mouse_genomes_project 7 140100064 140113999 + MGP_CASTEiJ_P0087924 Tspan32 protein_coding protein_coding MGP_CASTEiJ_T0087925.1 MGP_CASTEiJ_G0032288.1 mouse_genomes_project 7 140100094 140113838 + MGP_CASTEiJ_P0087925 Tspan32 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087926.1 MGP_CASTEiJ_G0032288.1 mouse_genomes_project 7 140100102 140113841 + MGP_CASTEiJ_P0087926 Tspan32 protein_coding protein_coding MGP_CASTEiJ_T0087927.1 MGP_CASTEiJ_G0032288.1 mouse_genomes_project 7 140100116 140113841 + MGP_CASTEiJ_P0087927 Tspan32 protein_coding protein_coding MGP_CASTEiJ_T0087928.1 MGP_CASTEiJ_G0032288.1 mouse_genomes_project 7 140100130 140113841 + MGP_CASTEiJ_P0087928 Tspan32 protein_coding protein_coding MGP_CASTEiJ_T0087929.1 MGP_CASTEiJ_G0032288.1 mouse_genomes_project 7 140100130 140113841 + MGP_CASTEiJ_P0087929 Tspan32 protein_coding protein_coding MGP_CASTEiJ_T0087930.1 MGP_CASTEiJ_G0032288.1 mouse_genomes_project 7 140100359 140112028 + MGP_CASTEiJ_P0087930 Tspan32 protein_coding protein_coding MGP_CASTEiJ_T0087931.1 MGP_CASTEiJ_G0032288.1 mouse_genomes_project 7 140111763 140113258 + Tspan32 protein_coding retained_intron MGP_CASTEiJ_T0082172.1 MGP_CASTEiJ_G0030828.1 mouse_genomes_project 7 14329143 14337587 + MGP_CASTEiJ_P0082172 Trappc6a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082173.1 MGP_CASTEiJ_G0030828.1 mouse_genomes_project 7 14329183 14337594 + MGP_CASTEiJ_P0082173 Trappc6a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082174.1 MGP_CASTEiJ_G0030828.1 mouse_genomes_project 7 14329185 14337594 + MGP_CASTEiJ_P0082174 Trappc6a protein_coding protein_coding MGP_CASTEiJ_T0082175.1 MGP_CASTEiJ_G0030828.1 mouse_genomes_project 7 14329199 14337590 + MGP_CASTEiJ_P0082175 Trappc6a protein_coding protein_coding MGP_CASTEiJ_T0082176.1 MGP_CASTEiJ_G0030828.1 mouse_genomes_project 7 14329203 14336767 + Trappc6a protein_coding retained_intron MGP_CASTEiJ_T0082177.1 MGP_CASTEiJ_G0030828.1 mouse_genomes_project 7 14335869 14337585 + MGP_CASTEiJ_P0082177 Trappc6a protein_coding protein_coding MGP_CASTEiJ_T0010591.1 MGP_CASTEiJ_G0008779.1 mouse_genomes_project 7 58981293 58981351 - Mir7057 miRNA miRNA MGP_CASTEiJ_T0084289.1 MGP_CASTEiJ_G0031350.1 mouse_genomes_project 7 49048823 49346050 + MGP_CASTEiJ_P0084289 Oca2 protein_coding protein_coding MGP_CASTEiJ_T0084290.1 MGP_CASTEiJ_G0031350.1 mouse_genomes_project 7 49048824 49066261 + MGP_CASTEiJ_P0084290 Oca2 protein_coding protein_coding MGP_CASTEiJ_T0084291.1 MGP_CASTEiJ_G0031350.1 mouse_genomes_project 7 49048840 49345796 + MGP_CASTEiJ_P0084291 Oca2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084292.1 MGP_CASTEiJ_G0031350.1 mouse_genomes_project 7 49048844 49087551 + MGP_CASTEiJ_P0084292 Oca2 protein_coding protein_coding MGP_CASTEiJ_T0084293.1 MGP_CASTEiJ_G0031350.1 mouse_genomes_project 7 49048871 49346045 + MGP_CASTEiJ_P0084293 Oca2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084294.1 MGP_CASTEiJ_G0031350.1 mouse_genomes_project 7 49114683 49134171 + Oca2 protein_coding processed_transcript MGP_CASTEiJ_T0086078.1 MGP_CASTEiJ_G0031900.1 mouse_genomes_project 7 108503750 108561876 - MGP_CASTEiJ_P0086078 Btbd10 protein_coding protein_coding MGP_CASTEiJ_T0086079.1 MGP_CASTEiJ_G0031900.1 mouse_genomes_project 7 108503761 108538280 - MGP_CASTEiJ_P0086079 Btbd10 protein_coding protein_coding MGP_CASTEiJ_T0086080.1 MGP_CASTEiJ_G0031900.1 mouse_genomes_project 7 108503770 108543933 - MGP_CASTEiJ_P0086080 Btbd10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086081.1 MGP_CASTEiJ_G0031900.1 mouse_genomes_project 7 108517164 108522580 - Btbd10 protein_coding retained_intron MGP_CASTEiJ_T0086082.1 MGP_CASTEiJ_G0031900.1 mouse_genomes_project 7 108561151 108561873 - Btbd10 protein_coding processed_transcript MGP_CASTEiJ_T0082048.1 MGP_CASTEiJ_G0030795.1 mouse_genomes_project 7 13674615 13711044 + MGP_CASTEiJ_P0082048 protein_coding protein_coding MGP_CASTEiJ_T0100005.1 MGP_CASTEiJ_G0036918.1 mouse_genomes_project 7 32519317 32519395 + Gm25784 snRNA snRNA MGP_CASTEiJ_T0102487.1 MGP_CASTEiJ_G0039212.1 mouse_genomes_project 7 10484755 10485049 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0081850.1 MGP_CASTEiJ_G0030733.1 mouse_genomes_project 7 8675466 8691338 - MGP_CASTEiJ_P0081850 Bsph2 protein_coding protein_coding MGP_CASTEiJ_T0081851.1 MGP_CASTEiJ_G0030733.1 mouse_genomes_project 7 8675468 8691338 - MGP_CASTEiJ_P0081851 Bsph2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0102504.1 MGP_CASTEiJ_G0039228.1 mouse_genomes_project 7 24945120 24945946 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0087298.1 MGP_CASTEiJ_G0032144.1 mouse_genomes_project 7 129064298 129090179 - MGP_CASTEiJ_P0087298 Mettl10 protein_coding protein_coding MGP_CASTEiJ_T0087299.1 MGP_CASTEiJ_G0032144.1 mouse_genomes_project 7 129069162 129090186 - MGP_CASTEiJ_P0087299 Mettl10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087300.1 MGP_CASTEiJ_G0032144.1 mouse_genomes_project 7 129069170 129090156 - MGP_CASTEiJ_P0087300 Mettl10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087301.1 MGP_CASTEiJ_G0032144.1 mouse_genomes_project 7 129074676 129089950 - Mettl10 protein_coding processed_transcript MGP_CASTEiJ_T0087302.1 MGP_CASTEiJ_G0032144.1 mouse_genomes_project 7 129087663 129090210 - Mettl10 protein_coding processed_transcript MGP_CASTEiJ_T0015240.1 MGP_CASTEiJ_G0013403.1 mouse_genomes_project 7 67966592 67966722 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085579.1 MGP_CASTEiJ_G0031648.1 mouse_genomes_project 7 97445286 97446309 + MGP_CASTEiJ_P0085579 Olfr556 protein_coding protein_coding MGP_CASTEiJ_T0084627.1 MGP_CASTEiJ_G0031416.1 mouse_genomes_project 7 72331978 72350789 - MGP_CASTEiJ_P0084627 Hapln3 protein_coding protein_coding MGP_CASTEiJ_T0084628.1 MGP_CASTEiJ_G0031416.1 mouse_genomes_project 7 72332596 72350766 - MGP_CASTEiJ_P0084628 Hapln3 protein_coding protein_coding MGP_CASTEiJ_T0084629.1 MGP_CASTEiJ_G0031416.1 mouse_genomes_project 7 72333863 72350784 - MGP_CASTEiJ_P0084629 Hapln3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084630.1 MGP_CASTEiJ_G0031416.1 mouse_genomes_project 7 72338625 72348462 - Hapln3 protein_coding processed_transcript MGP_CASTEiJ_T0002242.1 MGP_CASTEiJ_G0002161.1 mouse_genomes_project 7 123769318 123770027 + TEC TEC MGP_CASTEiJ_T0101246.1 MGP_CASTEiJ_G0038159.1 mouse_genomes_project 7 52235961 52236050 - Gm22373 snoRNA snoRNA MGP_CASTEiJ_T0082564.1 MGP_CASTEiJ_G0030931.1 mouse_genomes_project 7 18901728 18903535 + MGP_CASTEiJ_P0082564 protein_coding protein_coding MGP_CASTEiJ_T0081750.1 MGP_CASTEiJ_G0030707.1 mouse_genomes_project 7 7597561 7603390 + Zfp606 protein_coding retained_intron MGP_CASTEiJ_T0081751.1 MGP_CASTEiJ_G0030707.1 mouse_genomes_project 7 7597591 7615027 + MGP_CASTEiJ_P0081751 Zfp606 protein_coding protein_coding MGP_CASTEiJ_T0081752.1 MGP_CASTEiJ_G0030707.1 mouse_genomes_project 7 7597619 7616253 + MGP_CASTEiJ_P0081752 Zfp606 protein_coding protein_coding MGP_CASTEiJ_T0081753.1 MGP_CASTEiJ_G0030707.1 mouse_genomes_project 7 7609003 7616244 + Zfp606 protein_coding retained_intron MGP_CASTEiJ_T0087792.1 MGP_CASTEiJ_G0032267.1 mouse_genomes_project 7 138720753 138729197 + MGP_CASTEiJ_P0087792 Muc2 protein_coding protein_coding MGP_CASTEiJ_T0087793.1 MGP_CASTEiJ_G0032267.1 mouse_genomes_project 7 138720782 138754622 + MGP_CASTEiJ_P0087793 Muc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0087794.1 MGP_CASTEiJ_G0032267.1 mouse_genomes_project 7 138726115 138727660 + MGP_CASTEiJ_P0087794 Muc2 protein_coding protein_coding MGP_CASTEiJ_T0087795.1 MGP_CASTEiJ_G0032267.1 mouse_genomes_project 7 138732090 138734388 + MGP_CASTEiJ_P0087795 Muc2 protein_coding protein_coding MGP_CASTEiJ_T0087796.1 MGP_CASTEiJ_G0032267.1 mouse_genomes_project 7 138737059 138737506 + MGP_CASTEiJ_P0087796 Muc2 protein_coding protein_coding MGP_CASTEiJ_T0087797.1 MGP_CASTEiJ_G0032267.1 mouse_genomes_project 7 138743031 138754778 + MGP_CASTEiJ_P0087797 Muc2 protein_coding protein_coding MGP_CASTEiJ_T0087798.1 MGP_CASTEiJ_G0032267.1 mouse_genomes_project 7 138745251 138754775 + MGP_CASTEiJ_P0087798 Muc2 protein_coding protein_coding MGP_CASTEiJ_T0015300.1 MGP_CASTEiJ_G0013463.1 mouse_genomes_project 7 116112243 116113095 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008647.1 MGP_CASTEiJ_G0006998.1 mouse_genomes_project 7 55857338 55947562 - 4930554H23Rik lincRNA lincRNA MGP_CASTEiJ_T0102591.1 MGP_CASTEiJ_G0039315.1 mouse_genomes_project 7 98863703 98864609 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002132.1 MGP_CASTEiJ_G0002052.1 mouse_genomes_project 7 23922769 23923495 + TEC TEC MGP_CASTEiJ_T0085933.1 MGP_CASTEiJ_G0031868.1 mouse_genomes_project 7 104484300 104487518 + MGP_CASTEiJ_P0085933 Rpl27a protein_coding protein_coding MGP_CASTEiJ_T0085934.1 MGP_CASTEiJ_G0031868.1 mouse_genomes_project 7 104484349 104486303 + Rpl27a protein_coding retained_intron MGP_CASTEiJ_T0085935.1 MGP_CASTEiJ_G0031868.1 mouse_genomes_project 7 104484352 104485335 + Rpl27a protein_coding retained_intron MGP_CASTEiJ_T0085936.1 MGP_CASTEiJ_G0031868.1 mouse_genomes_project 7 104484366 104486917 + Rpl27a protein_coding retained_intron MGP_CASTEiJ_T0085937.1 MGP_CASTEiJ_G0031868.1 mouse_genomes_project 7 104484373 104485752 + MGP_CASTEiJ_P0085937 Rpl27a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085938.1 MGP_CASTEiJ_G0031868.1 mouse_genomes_project 7 104484423 104485094 + Rpl27a protein_coding retained_intron MGP_CASTEiJ_T0015331.1 MGP_CASTEiJ_G0013494.1 mouse_genomes_project 7 135726005 135726957 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082348.1 MGP_CASTEiJ_G0030882.1 mouse_genomes_project 7 16805267 16828197 + MGP_CASTEiJ_P0082348 Ethe1 protein_coding protein_coding MGP_CASTEiJ_T0002141.1 MGP_CASTEiJ_G0002061.1 mouse_genomes_project 7 28182167 28184547 + TEC TEC MGP_CASTEiJ_T0087479.1 MGP_CASTEiJ_G0032184.1 mouse_genomes_project 7 136874029 136887771 - Adam8 protein_coding retained_intron MGP_CASTEiJ_T0087480.1 MGP_CASTEiJ_G0032184.1 mouse_genomes_project 7 136874029 136883646 - Adam8 protein_coding retained_intron MGP_CASTEiJ_T0087481.1 MGP_CASTEiJ_G0032184.1 mouse_genomes_project 7 136874029 136887771 - MGP_CASTEiJ_P0087481 Adam8 protein_coding protein_coding MGP_CASTEiJ_T0087482.1 MGP_CASTEiJ_G0032184.1 mouse_genomes_project 7 136874029 136887757 - MGP_CASTEiJ_P0087482 Adam8 protein_coding protein_coding MGP_CASTEiJ_T0087483.1 MGP_CASTEiJ_G0032184.1 mouse_genomes_project 7 136874491 136875587 - Adam8 protein_coding processed_transcript MGP_CASTEiJ_T0087484.1 MGP_CASTEiJ_G0032184.1 mouse_genomes_project 7 136879065 136887771 - MGP_CASTEiJ_P0087484 Adam8 protein_coding protein_coding MGP_CASTEiJ_T0087485.1 MGP_CASTEiJ_G0032184.1 mouse_genomes_project 7 136882865 136883642 - Adam8 protein_coding processed_transcript MGP_CASTEiJ_T0087486.1 MGP_CASTEiJ_G0032184.1 mouse_genomes_project 7 136884630 136887717 - MGP_CASTEiJ_P0087486 Adam8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0017605.1 MGP_CASTEiJ_G0014983.1 mouse_genomes_project 7 37876601 37878388 + Mtag2 processed_transcript processed_transcript MGP_CASTEiJ_T0017606.1 MGP_CASTEiJ_G0014983.1 mouse_genomes_project 7 37877672 37878388 + Mtag2 processed_transcript pseudogene MGP_CASTEiJ_T0084450.1 MGP_CASTEiJ_G0031384.1 mouse_genomes_project 7 58992058 59028507 - MGP_CASTEiJ_P0084450 Aldh1a3 protein_coding protein_coding MGP_CASTEiJ_T0084451.1 MGP_CASTEiJ_G0031384.1 mouse_genomes_project 7 59001075 59007142 - Aldh1a3 protein_coding retained_intron MGP_CASTEiJ_T0084452.1 MGP_CASTEiJ_G0031384.1 mouse_genomes_project 7 59003209 59020182 - MGP_CASTEiJ_P0084452 Aldh1a3 protein_coding protein_coding MGP_CASTEiJ_T0084453.1 MGP_CASTEiJ_G0031384.1 mouse_genomes_project 7 59009653 59027581 - Aldh1a3 protein_coding processed_transcript MGP_CASTEiJ_T0084454.1 MGP_CASTEiJ_G0031384.1 mouse_genomes_project 7 59009908 59026693 - Aldh1a3 protein_coding processed_transcript MGP_CASTEiJ_T0005030.1 MGP_CASTEiJ_G0004295.1 mouse_genomes_project 7 17691509 17767727 + antisense antisense MGP_CASTEiJ_T0005031.1 MGP_CASTEiJ_G0004295.1 mouse_genomes_project 7 17691513 17704688 + antisense antisense MGP_CASTEiJ_T0005032.1 MGP_CASTEiJ_G0004295.1 mouse_genomes_project 7 17703756 17704525 + antisense antisense MGP_CASTEiJ_T0005033.1 MGP_CASTEiJ_G0004295.1 mouse_genomes_project 7 17714414 17868053 + antisense antisense MGP_CASTEiJ_T0086565.1 MGP_CASTEiJ_G0032003.1 mouse_genomes_project 7 122128784 122142094 - MGP_CASTEiJ_P0086565 Nfatc2ip protein_coding protein_coding MGP_CASTEiJ_T0086566.1 MGP_CASTEiJ_G0032003.1 mouse_genomes_project 7 122130796 122136272 - MGP_CASTEiJ_P0086566 Nfatc2ip protein_coding protein_coding MGP_CASTEiJ_T0011363.1 MGP_CASTEiJ_G0009551.1 mouse_genomes_project 7 118103476 118103745 + Gm26414 misc_RNA misc_RNA MGP_CASTEiJ_T0101658.1 MGP_CASTEiJ_G0038496.1 mouse_genomes_project 7 61334787 61336341 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101659.1 MGP_CASTEiJ_G0038496.1 mouse_genomes_project 7 61335169 61335889 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0083640.1 MGP_CASTEiJ_G0031184.1 mouse_genomes_project 7 36156663 36165670 + MGP_CASTEiJ_P0083640 Klk15 protein_coding protein_coding MGP_CASTEiJ_T0083641.1 MGP_CASTEiJ_G0031184.1 mouse_genomes_project 7 36156716 36164760 + MGP_CASTEiJ_P0083641 Klk15 protein_coding protein_coding MGP_CASTEiJ_T0084650.1 MGP_CASTEiJ_G0031420.1 mouse_genomes_project 7 72630584 72641541 + MGP_CASTEiJ_P0084650 Fanci protein_coding protein_coding MGP_CASTEiJ_T0084651.1 MGP_CASTEiJ_G0031420.1 mouse_genomes_project 7 72630987 72649256 + MGP_CASTEiJ_P0084651 Fanci protein_coding protein_coding MGP_CASTEiJ_T0084652.1 MGP_CASTEiJ_G0031420.1 mouse_genomes_project 7 72630991 72692466 + MGP_CASTEiJ_P0084652 Fanci protein_coding protein_coding MGP_CASTEiJ_T0084653.1 MGP_CASTEiJ_G0031420.1 mouse_genomes_project 7 72631032 72692466 + MGP_CASTEiJ_P0084653 Fanci protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084654.1 MGP_CASTEiJ_G0031420.1 mouse_genomes_project 7 72638818 72676617 + MGP_CASTEiJ_P0084654 Fanci protein_coding protein_coding MGP_CASTEiJ_T0084655.1 MGP_CASTEiJ_G0031420.1 mouse_genomes_project 7 72652133 72668121 + MGP_CASTEiJ_P0084655 Fanci protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084656.1 MGP_CASTEiJ_G0031420.1 mouse_genomes_project 7 72681677 72687927 + MGP_CASTEiJ_P0084656 Fanci protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084330.1 MGP_CASTEiJ_G0031358.1 mouse_genomes_project 7 52313469 52323649 - MGP_CASTEiJ_P0084330 protein_coding protein_coding MGP_CASTEiJ_T0011358.1 MGP_CASTEiJ_G0009546.1 mouse_genomes_project 7 85288240 85288450 - Gm27470 misc_RNA misc_RNA MGP_CASTEiJ_T0008824.1 MGP_CASTEiJ_G0007116.1 mouse_genomes_project 7 139668991 139673525 - lincRNA lincRNA MGP_CASTEiJ_T0008825.1 MGP_CASTEiJ_G0007116.1 mouse_genomes_project 7 139669020 139671597 - lincRNA lincRNA MGP_CASTEiJ_T0008826.1 MGP_CASTEiJ_G0007116.1 mouse_genomes_project 7 139669096 139670015 - lincRNA lincRNA MGP_CASTEiJ_T0008827.1 MGP_CASTEiJ_G0007116.1 mouse_genomes_project 7 139669772 139670387 - lincRNA lincRNA MGP_CASTEiJ_T0008828.1 MGP_CASTEiJ_G0007116.1 mouse_genomes_project 7 139669983 139671572 - lincRNA lincRNA MGP_CASTEiJ_T0083968.1 MGP_CASTEiJ_G0031264.1 mouse_genomes_project 7 38071316 38099038 + MGP_CASTEiJ_P0083968 Plekha4 protein_coding protein_coding MGP_CASTEiJ_T0083969.1 MGP_CASTEiJ_G0031264.1 mouse_genomes_project 7 38071316 38103699 + MGP_CASTEiJ_P0083969 Plekha4 protein_coding protein_coding MGP_CASTEiJ_T0083970.1 MGP_CASTEiJ_G0031264.1 mouse_genomes_project 7 38075770 38103699 + MGP_CASTEiJ_P0083970 Plekha4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083971.1 MGP_CASTEiJ_G0031264.1 mouse_genomes_project 7 38075817 38078120 + MGP_CASTEiJ_P0083971 Plekha4 protein_coding protein_coding MGP_CASTEiJ_T0083972.1 MGP_CASTEiJ_G0031264.1 mouse_genomes_project 7 38075883 38103699 + MGP_CASTEiJ_P0083972 Plekha4 protein_coding protein_coding MGP_CASTEiJ_T0083973.1 MGP_CASTEiJ_G0031264.1 mouse_genomes_project 7 38076348 38103502 + MGP_CASTEiJ_P0083973 Plekha4 protein_coding protein_coding MGP_CASTEiJ_T0083974.1 MGP_CASTEiJ_G0031264.1 mouse_genomes_project 7 38099309 38103699 + Plekha4 protein_coding processed_transcript MGP_CASTEiJ_T0083975.1 MGP_CASTEiJ_G0031264.1 mouse_genomes_project 7 38102159 38103699 + Plekha4 protein_coding retained_intron MGP_CASTEiJ_T0017661.1 MGP_CASTEiJ_G0015003.1 mouse_genomes_project 7 113655665 113657364 + 4930583K01Rik processed_transcript processed_transcript MGP_CASTEiJ_T0102589.1 MGP_CASTEiJ_G0039313.1 mouse_genomes_project 7 98693950 98694079 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002156.1 MGP_CASTEiJ_G0002076.1 mouse_genomes_project 7 38976098 38976614 + TEC TEC MGP_CASTEiJ_T0085567.1 MGP_CASTEiJ_G0031637.1 mouse_genomes_project 7 97262804 97265111 - MGP_CASTEiJ_P0085567 Olfr544 protein_coding protein_coding MGP_CASTEiJ_T0002191.1 MGP_CASTEiJ_G0002110.1 mouse_genomes_project 7 68817161 68818463 + TEC TEC MGP_CASTEiJ_T0015236.1 MGP_CASTEiJ_G0013399.1 mouse_genomes_project 7 65683400 65684388 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015218.1 MGP_CASTEiJ_G0013381.1 mouse_genomes_project 7 45671742 45672725 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005062.1 MGP_CASTEiJ_G0004320.1 mouse_genomes_project 7 27188073 27225655 + E130304I02Rik antisense antisense MGP_CASTEiJ_T0005063.1 MGP_CASTEiJ_G0004320.1 mouse_genomes_project 7 27188074 27188509 + E130304I02Rik antisense antisense MGP_CASTEiJ_T0008704.1 MGP_CASTEiJ_G0007042.1 mouse_genomes_project 7 72044733 72047667 - Gm44730 lincRNA lincRNA MGP_CASTEiJ_T0101248.1 MGP_CASTEiJ_G0038161.1 mouse_genomes_project 7 52296858 52296928 - Snord107 snoRNA snoRNA MGP_CASTEiJ_T0084280.1 MGP_CASTEiJ_G0031348.1 mouse_genomes_project 7 48788629 48836035 - MGP_CASTEiJ_P0084280 Nipa1 protein_coding protein_coding MGP_CASTEiJ_T0087332.1 MGP_CASTEiJ_G0032148.1 mouse_genomes_project 7 129905298 129944746 + MGP_CASTEiJ_P0087332 Edrf1 protein_coding protein_coding MGP_CASTEiJ_T0087333.1 MGP_CASTEiJ_G0032148.1 mouse_genomes_project 7 129905448 129943960 + MGP_CASTEiJ_P0087333 Edrf1 protein_coding protein_coding MGP_CASTEiJ_T0087334.1 MGP_CASTEiJ_G0032148.1 mouse_genomes_project 7 129905616 129907127 + Edrf1 protein_coding retained_intron MGP_CASTEiJ_T0087335.1 MGP_CASTEiJ_G0032148.1 mouse_genomes_project 7 129924924 129929726 + MGP_CASTEiJ_P0087335 Edrf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087336.1 MGP_CASTEiJ_G0032148.1 mouse_genomes_project 7 129933798 129943710 + MGP_CASTEiJ_P0087336 Edrf1 protein_coding protein_coding MGP_CASTEiJ_T0087337.1 MGP_CASTEiJ_G0032148.1 mouse_genomes_project 7 129935078 129943248 + Edrf1 protein_coding retained_intron MGP_CASTEiJ_T0010551.1 MGP_CASTEiJ_G0008739.1 mouse_genomes_project 7 22501819 22501879 + Mir7668 miRNA miRNA MGP_CASTEiJ_T0081985.1 MGP_CASTEiJ_G0030773.1 mouse_genomes_project 7 11672501 11676145 + MGP_CASTEiJ_P0081985 Gng8 protein_coding protein_coding MGP_CASTEiJ_T0081986.1 MGP_CASTEiJ_G0030773.1 mouse_genomes_project 7 11672927 11676155 + MGP_CASTEiJ_P0081986 Gng8 protein_coding protein_coding MGP_CASTEiJ_T0081987.1 MGP_CASTEiJ_G0030773.1 mouse_genomes_project 7 11672986 11676143 + MGP_CASTEiJ_P0081987 Gng8 protein_coding protein_coding MGP_CASTEiJ_T0081988.1 MGP_CASTEiJ_G0030773.1 mouse_genomes_project 7 11673036 11676146 + Gng8 protein_coding processed_transcript MGP_CASTEiJ_T0081989.1 MGP_CASTEiJ_G0030773.1 mouse_genomes_project 7 11675365 11676156 + Gng8 protein_coding retained_intron MGP_CASTEiJ_T0081990.1 MGP_CASTEiJ_G0030773.1 mouse_genomes_project 7 11675663 11676083 + Gng8 protein_coding retained_intron MGP_CASTEiJ_T0008812.1 MGP_CASTEiJ_G0007107.1 mouse_genomes_project 7 126537306 126540848 + lincRNA lincRNA MGP_CASTEiJ_T0081857.1 MGP_CASTEiJ_G0030738.1 mouse_genomes_project 7 9371516 9401839 - MGP_CASTEiJ_P0081857 Sult2a8 protein_coding protein_coding MGP_CASTEiJ_T0081858.1 MGP_CASTEiJ_G0030738.1 mouse_genomes_project 7 9371519 9410105 - MGP_CASTEiJ_P0081858 Sult2a8 protein_coding protein_coding MGP_CASTEiJ_T0081859.1 MGP_CASTEiJ_G0030738.1 mouse_genomes_project 7 9376846 9410288 - MGP_CASTEiJ_P0081859 Sult2a8 protein_coding protein_coding MGP_CASTEiJ_T0101265.1 MGP_CASTEiJ_G0038178.1 mouse_genomes_project 7 104485275 104485407 + Snora3 snoRNA snoRNA MGP_CASTEiJ_T0008639.1 MGP_CASTEiJ_G0006991.1 mouse_genomes_project 7 35862864 35863338 - Gm44819 lincRNA lincRNA MGP_CASTEiJ_T0081755.1 MGP_CASTEiJ_G0030709.1 mouse_genomes_project 7 7871088 7883751 - MGP_CASTEiJ_P0081755 Zscan18 protein_coding unknown_likely_coding MGP_CASTEiJ_T0087537.1 MGP_CASTEiJ_G0032208.1 mouse_genomes_project 7 137434526 137441354 - MGP_CASTEiJ_P0087537 Olfr536 protein_coding protein_coding MGP_CASTEiJ_T0083839.1 MGP_CASTEiJ_G0031230.1 mouse_genomes_project 7 37496299 37525285 - MGP_CASTEiJ_P0083839 Prr12 protein_coding protein_coding MGP_CASTEiJ_T0008801.1 MGP_CASTEiJ_G0007098.1 mouse_genomes_project 7 123552681 123562371 + Gm44514 lincRNA lincRNA MGP_CASTEiJ_T0008802.1 MGP_CASTEiJ_G0007098.1 mouse_genomes_project 7 123557381 123562994 + Gm44514 lincRNA lincRNA MGP_CASTEiJ_T0081993.1 MGP_CASTEiJ_G0030775.1 mouse_genomes_project 7 11700764 11710171 - MGP_CASTEiJ_P0081993 Calm3 protein_coding protein_coding MGP_CASTEiJ_T0081994.1 MGP_CASTEiJ_G0030775.1 mouse_genomes_project 7 11700786 11702558 - MGP_CASTEiJ_P0081994 Calm3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081995.1 MGP_CASTEiJ_G0030775.1 mouse_genomes_project 7 11701318 11702596 - MGP_CASTEiJ_P0081995 Calm3 protein_coding protein_coding MGP_CASTEiJ_T0081996.1 MGP_CASTEiJ_G0030775.1 mouse_genomes_project 7 11702536 11709886 - Calm3 protein_coding processed_transcript MGP_CASTEiJ_T0005042.1 MGP_CASTEiJ_G0004303.1 mouse_genomes_project 7 22140572 22143023 - Gm29326 antisense antisense MGP_CASTEiJ_T0086876.1 MGP_CASTEiJ_G0032058.1 mouse_genomes_project 7 123126224 123168946 + MGP_CASTEiJ_P0086876 Itgal protein_coding protein_coding MGP_CASTEiJ_T0086877.1 MGP_CASTEiJ_G0032058.1 mouse_genomes_project 7 123126255 123168947 + MGP_CASTEiJ_P0086877 Itgal protein_coding protein_coding MGP_CASTEiJ_T0086878.1 MGP_CASTEiJ_G0032058.1 mouse_genomes_project 7 123126279 123165107 + MGP_CASTEiJ_P0086878 Itgal protein_coding protein_coding MGP_CASTEiJ_T0086879.1 MGP_CASTEiJ_G0032058.1 mouse_genomes_project 7 123126374 123167544 + MGP_CASTEiJ_P0086879 Itgal protein_coding protein_coding MGP_CASTEiJ_T0086880.1 MGP_CASTEiJ_G0032058.1 mouse_genomes_project 7 123127396 123129531 + Itgal protein_coding processed_transcript MGP_CASTEiJ_T0086881.1 MGP_CASTEiJ_G0032058.1 mouse_genomes_project 7 123140642 123168946 + MGP_CASTEiJ_P0086881 Itgal protein_coding protein_coding MGP_CASTEiJ_T0008808.1 MGP_CASTEiJ_G0007104.1 mouse_genomes_project 7 125638888 125713986 + Gm44868 lincRNA lincRNA MGP_CASTEiJ_T0008809.1 MGP_CASTEiJ_G0007104.1 mouse_genomes_project 7 125638976 125642668 + Gm44868 lincRNA lincRNA MGP_CASTEiJ_T0083801.1 MGP_CASTEiJ_G0031217.1 mouse_genomes_project 7 37309597 37315059 + MGP_CASTEiJ_P0083801 Pnkp protein_coding protein_coding MGP_CASTEiJ_T0083802.1 MGP_CASTEiJ_G0031217.1 mouse_genomes_project 7 37309609 37309964 + MGP_CASTEiJ_P0083802 Pnkp protein_coding protein_coding MGP_CASTEiJ_T0083803.1 MGP_CASTEiJ_G0031217.1 mouse_genomes_project 7 37309617 37315401 + MGP_CASTEiJ_P0083803 Pnkp protein_coding protein_coding MGP_CASTEiJ_T0083804.1 MGP_CASTEiJ_G0031217.1 mouse_genomes_project 7 37309625 37315065 + Pnkp protein_coding retained_intron MGP_CASTEiJ_T0083805.1 MGP_CASTEiJ_G0031217.1 mouse_genomes_project 7 37309631 37312994 + MGP_CASTEiJ_P0083805 Pnkp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083806.1 MGP_CASTEiJ_G0031217.1 mouse_genomes_project 7 37309798 37313921 + MGP_CASTEiJ_P0083806 Pnkp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083807.1 MGP_CASTEiJ_G0031217.1 mouse_genomes_project 7 37309800 37315058 + MGP_CASTEiJ_P0083807 Pnkp protein_coding protein_coding MGP_CASTEiJ_T0083808.1 MGP_CASTEiJ_G0031217.1 mouse_genomes_project 7 37309806 37315059 + MGP_CASTEiJ_P0083808 Pnkp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083809.1 MGP_CASTEiJ_G0031217.1 mouse_genomes_project 7 37309837 37315050 + MGP_CASTEiJ_P0083809 Pnkp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083810.1 MGP_CASTEiJ_G0031217.1 mouse_genomes_project 7 37309852 37315059 + MGP_CASTEiJ_P0083810 Pnkp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083811.1 MGP_CASTEiJ_G0031217.1 mouse_genomes_project 7 37312220 37315057 + Pnkp protein_coding retained_intron MGP_CASTEiJ_T0083812.1 MGP_CASTEiJ_G0031217.1 mouse_genomes_project 7 37312992 37313939 + Pnkp protein_coding retained_intron MGP_CASTEiJ_T0083813.1 MGP_CASTEiJ_G0031217.1 mouse_genomes_project 7 37313944 37315059 + MGP_CASTEiJ_P0083813 Pnkp protein_coding non_stop_decay MGP_CASTEiJ_T0083814.1 MGP_CASTEiJ_G0031217.1 mouse_genomes_project 7 37314082 37315057 + MGP_CASTEiJ_P0083814 Pnkp protein_coding protein_coding MGP_CASTEiJ_T0083815.1 MGP_CASTEiJ_G0031217.1 mouse_genomes_project 7 37314265 37315079 + Pnkp protein_coding retained_intron MGP_CASTEiJ_T0083063.1 MGP_CASTEiJ_G0031058.1 mouse_genomes_project 7 23087086 23097687 - Kirrel2 protein_coding retained_intron MGP_CASTEiJ_T0083064.1 MGP_CASTEiJ_G0031058.1 mouse_genomes_project 7 23087088 23097568 - MGP_CASTEiJ_P0083064 Kirrel2 protein_coding protein_coding MGP_CASTEiJ_T0083065.1 MGP_CASTEiJ_G0031058.1 mouse_genomes_project 7 23087622 23090381 - MGP_CASTEiJ_P0083065 Kirrel2 protein_coding protein_coding MGP_CASTEiJ_T0083066.1 MGP_CASTEiJ_G0031058.1 mouse_genomes_project 7 23087670 23096884 - MGP_CASTEiJ_P0083066 Kirrel2 protein_coding protein_coding MGP_CASTEiJ_T0083067.1 MGP_CASTEiJ_G0031058.1 mouse_genomes_project 7 23097018 23097728 - Kirrel2 protein_coding processed_transcript MGP_CASTEiJ_T0085502.1 MGP_CASTEiJ_G0031622.1 mouse_genomes_project 7 96700387 96748205 + MGP_CASTEiJ_P0085502 Numa1 protein_coding protein_coding MGP_CASTEiJ_T0085503.1 MGP_CASTEiJ_G0031622.1 mouse_genomes_project 7 96700732 96747492 + MGP_CASTEiJ_P0085503 Numa1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085504.1 MGP_CASTEiJ_G0031622.1 mouse_genomes_project 7 96734664 96748201 + MGP_CASTEiJ_P0085504 Numa1 protein_coding protein_coding MGP_CASTEiJ_T0098653.1 MGP_CASTEiJ_G0035584.1 mouse_genomes_project 7 128227024 128227144 + n-R5s159 rRNA rRNA MGP_CASTEiJ_T0102467.1 MGP_CASTEiJ_G0039192.1 mouse_genomes_project 7 8368836 8369037 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0085040.1 MGP_CASTEiJ_G0031525.1 mouse_genomes_project 7 83756512 83923505 + Me3 protein_coding retained_intron MGP_CASTEiJ_T0085041.1 MGP_CASTEiJ_G0031525.1 mouse_genomes_project 7 83756654 83767341 + Me3 protein_coding processed_transcript MGP_CASTEiJ_T0085042.1 MGP_CASTEiJ_G0031525.1 mouse_genomes_project 7 83756823 83962206 + MGP_CASTEiJ_P0085042 Me3 protein_coding protein_coding MGP_CASTEiJ_T0085043.1 MGP_CASTEiJ_G0031525.1 mouse_genomes_project 7 83756988 83957000 + Me3 protein_coding retained_intron MGP_CASTEiJ_T0085044.1 MGP_CASTEiJ_G0031525.1 mouse_genomes_project 7 83849230 83933456 + Me3 protein_coding processed_transcript MGP_CASTEiJ_T0085045.1 MGP_CASTEiJ_G0031525.1 mouse_genomes_project 7 83937216 83959813 + MGP_CASTEiJ_P0085045 Me3 protein_coding protein_coding MGP_CASTEiJ_T0082723.1 MGP_CASTEiJ_G0030975.1 mouse_genomes_project 7 20643551 20651367 + MGP_CASTEiJ_P0082723 Dyrk1b protein_coding protein_coding MGP_CASTEiJ_T0082724.1 MGP_CASTEiJ_G0030975.1 mouse_genomes_project 7 20643576 20650996 + MGP_CASTEiJ_P0082724 Dyrk1b protein_coding protein_coding MGP_CASTEiJ_T0082725.1 MGP_CASTEiJ_G0030975.1 mouse_genomes_project 7 20644348 20651367 + MGP_CASTEiJ_P0082725 Dyrk1b protein_coding protein_coding MGP_CASTEiJ_T0082726.1 MGP_CASTEiJ_G0030975.1 mouse_genomes_project 7 20644398 20651016 + MGP_CASTEiJ_P0082726 Dyrk1b protein_coding protein_coding MGP_CASTEiJ_T0086377.1 MGP_CASTEiJ_G0031968.1 mouse_genomes_project 7 116983787 116990787 + MGP_CASTEiJ_P0086377 Hs3st2 protein_coding protein_coding MGP_CASTEiJ_T0086378.1 MGP_CASTEiJ_G0031968.1 mouse_genomes_project 7 116984223 117097024 + MGP_CASTEiJ_P0086378 Hs3st2 protein_coding protein_coding MGP_CASTEiJ_T0081794.1 MGP_CASTEiJ_G0030720.1 mouse_genomes_project 7 8161262 8168128 + MGP_CASTEiJ_P0081794 Trim28 protein_coding protein_coding MGP_CASTEiJ_T0081795.1 MGP_CASTEiJ_G0030720.1 mouse_genomes_project 7 8161764 8168132 + MGP_CASTEiJ_P0081795 Trim28 protein_coding unknown_likely_coding MGP_CASTEiJ_T0081796.1 MGP_CASTEiJ_G0030720.1 mouse_genomes_project 7 8164709 8166221 + Trim28 protein_coding retained_intron MGP_CASTEiJ_T0081797.1 MGP_CASTEiJ_G0030720.1 mouse_genomes_project 7 8164921 8165599 + Trim28 protein_coding retained_intron MGP_CASTEiJ_T0081798.1 MGP_CASTEiJ_G0030720.1 mouse_genomes_project 7 8165113 8166696 + Trim28 protein_coding retained_intron MGP_CASTEiJ_T0081799.1 MGP_CASTEiJ_G0030720.1 mouse_genomes_project 7 8165501 8166462 + Trim28 protein_coding retained_intron MGP_CASTEiJ_T0081800.1 MGP_CASTEiJ_G0030720.1 mouse_genomes_project 7 8165976 8167023 + Trim28 protein_coding retained_intron MGP_CASTEiJ_T0081801.1 MGP_CASTEiJ_G0030720.1 mouse_genomes_project 7 8166187 8167092 + Trim28 protein_coding retained_intron MGP_CASTEiJ_T0081802.1 MGP_CASTEiJ_G0030720.1 mouse_genomes_project 7 8166800 8167440 + Trim28 protein_coding retained_intron MGP_CASTEiJ_T0081803.1 MGP_CASTEiJ_G0030720.1 mouse_genomes_project 7 8167464 8168125 + Trim28 protein_coding retained_intron MGP_CASTEiJ_T0005059.1 MGP_CASTEiJ_G0004317.1 mouse_genomes_project 7 26336419 26336772 + Gm45095 antisense antisense MGP_CASTEiJ_T0086796.1 MGP_CASTEiJ_G0032039.1 mouse_genomes_project 7 122778369 122808401 - MGP_CASTEiJ_P0086796 Mvp protein_coding protein_coding MGP_CASTEiJ_T0086797.1 MGP_CASTEiJ_G0032039.1 mouse_genomes_project 7 122791792 122805657 - MGP_CASTEiJ_P0086797 Mvp protein_coding protein_coding MGP_CASTEiJ_T0086799.1 MGP_CASTEiJ_G0032039.1 mouse_genomes_project 7 122803550 122808330 - Mvp protein_coding retained_intron MGP_CASTEiJ_T0087283.1 MGP_CASTEiJ_G0032139.1 mouse_genomes_project 7 128770333 128789367 - MGP_CASTEiJ_P0087283 Oat protein_coding protein_coding MGP_CASTEiJ_T0084003.1 MGP_CASTEiJ_G0031274.1 mouse_genomes_project 7 38262764 38273332 + MGP_CASTEiJ_P0084003 Ntn5 protein_coding protein_coding MGP_CASTEiJ_T0084004.1 MGP_CASTEiJ_G0031274.1 mouse_genomes_project 7 38263146 38273335 + MGP_CASTEiJ_P0084004 Ntn5 protein_coding protein_coding MGP_CASTEiJ_T0084005.1 MGP_CASTEiJ_G0031274.1 mouse_genomes_project 7 38263159 38273206 + MGP_CASTEiJ_P0084005 Ntn5 protein_coding protein_coding MGP_CASTEiJ_T0082187.1 MGP_CASTEiJ_G0030833.1 mouse_genomes_project 7 14416288 14431738 - MGP_CASTEiJ_P0082187 Clasrp protein_coding protein_coding MGP_CASTEiJ_T0087629.1 MGP_CASTEiJ_G0032241.1 mouse_genomes_project 7 138164507 138169344 - MGP_CASTEiJ_P0087629 Hras protein_coding protein_coding MGP_CASTEiJ_T0087630.1 MGP_CASTEiJ_G0032241.1 mouse_genomes_project 7 138165330 138169388 - MGP_CASTEiJ_P0087630 Hras protein_coding protein_coding MGP_CASTEiJ_T0087631.1 MGP_CASTEiJ_G0032241.1 mouse_genomes_project 7 138166323 138169378 - Hras protein_coding retained_intron MGP_CASTEiJ_T0087632.1 MGP_CASTEiJ_G0032241.1 mouse_genomes_project 7 138166323 138169389 - MGP_CASTEiJ_P0087632 Hras protein_coding protein_coding MGP_CASTEiJ_T0087633.1 MGP_CASTEiJ_G0032241.1 mouse_genomes_project 7 138166324 138167902 - Hras protein_coding processed_transcript MGP_CASTEiJ_T0087634.1 MGP_CASTEiJ_G0032241.1 mouse_genomes_project 7 138166327 138167375 - Hras protein_coding processed_transcript MGP_CASTEiJ_T0087635.1 MGP_CASTEiJ_G0032241.1 mouse_genomes_project 7 138166327 138169266 - MGP_CASTEiJ_P0087635 Hras protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085297.1 MGP_CASTEiJ_G0031585.1 mouse_genomes_project 7 94378417 94402544 - MGP_CASTEiJ_P0085297 Spcs2 protein_coding protein_coding MGP_CASTEiJ_T0085873.1 MGP_CASTEiJ_G0031826.1 mouse_genomes_project 7 102682759 102692436 - MGP_CASTEiJ_P0085873 Cyb5r2 protein_coding protein_coding MGP_CASTEiJ_T0085874.1 MGP_CASTEiJ_G0031826.1 mouse_genomes_project 7 102684287 102692429 - MGP_CASTEiJ_P0085874 Cyb5r2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0005114.1 MGP_CASTEiJ_G0004354.1 mouse_genomes_project 7 90714599 90717081 - Gm15412 antisense antisense MGP_CASTEiJ_T0081736.1 MGP_CASTEiJ_G0030696.1 mouse_genomes_project 7 6987106 6988021 + MGP_CASTEiJ_P0081736 Vmn1r74 protein_coding protein_coding MGP_CASTEiJ_T0085950.1 MGP_CASTEiJ_G0031872.1 mouse_genomes_project 7 104702865 104706848 - MGP_CASTEiJ_P0085950 Ascl3 protein_coding protein_coding MGP_CASTEiJ_T0085013.1 MGP_CASTEiJ_G0031516.1 mouse_genomes_project 7 81306506 81363268 + MGP_CASTEiJ_P0085013 Nox4 protein_coding protein_coding MGP_CASTEiJ_T0085014.1 MGP_CASTEiJ_G0031516.1 mouse_genomes_project 7 81307041 81366598 + Nox4 protein_coding retained_intron MGP_CASTEiJ_T0085015.1 MGP_CASTEiJ_G0031516.1 mouse_genomes_project 7 81307041 81347359 + Nox4 protein_coding processed_transcript MGP_CASTEiJ_T0085016.1 MGP_CASTEiJ_G0031516.1 mouse_genomes_project 7 81307041 81463341 + MGP_CASTEiJ_P0085016 Nox4 protein_coding protein_coding MGP_CASTEiJ_T0085017.1 MGP_CASTEiJ_G0031516.1 mouse_genomes_project 7 81307041 81466183 + MGP_CASTEiJ_P0085017 Nox4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085018.1 MGP_CASTEiJ_G0031516.1 mouse_genomes_project 7 81307041 81458340 + MGP_CASTEiJ_P0085018 Nox4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085019.1 MGP_CASTEiJ_G0031516.1 mouse_genomes_project 7 81307041 81466183 + MGP_CASTEiJ_P0085019 Nox4 protein_coding protein_coding MGP_CASTEiJ_T0085020.1 MGP_CASTEiJ_G0031516.1 mouse_genomes_project 7 81307205 81465813 + MGP_CASTEiJ_P0085020 Nox4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0005021.1 MGP_CASTEiJ_G0004287.1 mouse_genomes_project 7 14676030 14678292 + Gm16175 antisense antisense MGP_CASTEiJ_T0082938.1 MGP_CASTEiJ_G0031023.1 mouse_genomes_project 7 22359791 22371163 + MGP_CASTEiJ_P0082938 Zfp84 protein_coding protein_coding MGP_CASTEiJ_T0085149.1 MGP_CASTEiJ_G0031552.1 mouse_genomes_project 7 91858113 91867580 + MGP_CASTEiJ_P0085149 Kctd14 protein_coding protein_coding MGP_CASTEiJ_T0085150.1 MGP_CASTEiJ_G0031552.1 mouse_genomes_project 7 91861299 91866689 + MGP_CASTEiJ_P0085150 Kctd14 protein_coding protein_coding MGP_CASTEiJ_T0085151.1 MGP_CASTEiJ_G0031552.1 mouse_genomes_project 7 91861299 91867578 + MGP_CASTEiJ_P0085151 Kctd14 protein_coding protein_coding MGP_CASTEiJ_T0085152.1 MGP_CASTEiJ_G0031552.1 mouse_genomes_project 7 91861299 91867578 + MGP_CASTEiJ_P0085152 Kctd14 protein_coding protein_coding MGP_CASTEiJ_T0085153.1 MGP_CASTEiJ_G0031552.1 mouse_genomes_project 7 91861299 91867575 + MGP_CASTEiJ_P0085153 Kctd14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085154.1 MGP_CASTEiJ_G0031552.1 mouse_genomes_project 7 91861317 91867577 + MGP_CASTEiJ_P0085154 Kctd14 protein_coding protein_coding MGP_CASTEiJ_T0087753.1 MGP_CASTEiJ_G0032259.1 mouse_genomes_project 7 138452353 138457897 + MGP_CASTEiJ_P0087753 Pnpla2 protein_coding protein_coding MGP_CASTEiJ_T0087754.1 MGP_CASTEiJ_G0032259.1 mouse_genomes_project 7 138452361 138457242 + MGP_CASTEiJ_P0087754 Pnpla2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087755.1 MGP_CASTEiJ_G0032259.1 mouse_genomes_project 7 138452362 138457244 + MGP_CASTEiJ_P0087755 Pnpla2 protein_coding protein_coding MGP_CASTEiJ_T0087756.1 MGP_CASTEiJ_G0032259.1 mouse_genomes_project 7 138452374 138456088 + MGP_CASTEiJ_P0087756 Pnpla2 protein_coding protein_coding MGP_CASTEiJ_T0087757.1 MGP_CASTEiJ_G0032259.1 mouse_genomes_project 7 138452384 138457253 + MGP_CASTEiJ_P0087757 Pnpla2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087758.1 MGP_CASTEiJ_G0032259.1 mouse_genomes_project 7 138452762 138455307 + MGP_CASTEiJ_P0087758 Pnpla2 protein_coding protein_coding MGP_CASTEiJ_T0087759.1 MGP_CASTEiJ_G0032259.1 mouse_genomes_project 7 138454173 138455836 + MGP_CASTEiJ_P0087759 Pnpla2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085783.1 MGP_CASTEiJ_G0031784.1 mouse_genomes_project 7 100758434 100762031 + MGP_CASTEiJ_P0085783 protein_coding protein_coding MGP_CASTEiJ_T0085784.1 MGP_CASTEiJ_G0031784.1 mouse_genomes_project 7 100758826 100760219 + MGP_CASTEiJ_P0085784 protein_coding protein_coding MGP_CASTEiJ_T0085785.1 MGP_CASTEiJ_G0031784.1 mouse_genomes_project 7 100758927 100770615 + MGP_CASTEiJ_P0085785 protein_coding protein_coding MGP_CASTEiJ_T0085787.1 MGP_CASTEiJ_G0031784.1 mouse_genomes_project 7 100758939 100760161 + protein_coding retained_intron MGP_CASTEiJ_T0085788.1 MGP_CASTEiJ_G0031784.1 mouse_genomes_project 7 100758939 100771156 + MGP_CASTEiJ_P0085788 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085789.1 MGP_CASTEiJ_G0031784.1 mouse_genomes_project 7 100758942 100760215 + MGP_CASTEiJ_P0085789 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085790.1 MGP_CASTEiJ_G0031784.1 mouse_genomes_project 7 100758945 100775237 + MGP_CASTEiJ_P0085790 protein_coding protein_coding MGP_CASTEiJ_T0085791.1 MGP_CASTEiJ_G0031784.1 mouse_genomes_project 7 100758946 100762026 + MGP_CASTEiJ_P0085791 protein_coding protein_coding MGP_CASTEiJ_T0085793.1 MGP_CASTEiJ_G0031784.1 mouse_genomes_project 7 100758964 100760125 + protein_coding processed_transcript MGP_CASTEiJ_T0085794.1 MGP_CASTEiJ_G0031784.1 mouse_genomes_project 7 100758965 100760201 + MGP_CASTEiJ_P0085794 protein_coding protein_coding MGP_CASTEiJ_T0085795.1 MGP_CASTEiJ_G0031784.1 mouse_genomes_project 7 100759046 100759660 + protein_coding retained_intron MGP_CASTEiJ_T0084158.1 MGP_CASTEiJ_G0031314.1 mouse_genomes_project 7 39896352 39897368 - MGP_CASTEiJ_P0084158 Mrgpra6 protein_coding protein_coding MGP_CASTEiJ_T0085705.1 MGP_CASTEiJ_G0031751.1 mouse_genomes_project 7 99755314 99759211 - MGP_CASTEiJ_P0085705 protein_coding protein_coding MGP_CASTEiJ_T0083081.1 MGP_CASTEiJ_G0031061.1 mouse_genomes_project 7 23165994 23181665 - MGP_CASTEiJ_P0083081 Arhgap33 protein_coding unknown_likely_coding MGP_CASTEiJ_T0081854.1 MGP_CASTEiJ_G0030736.1 mouse_genomes_project 7 9188186 9222962 - MGP_CASTEiJ_P0081854 Sult2a6 protein_coding protein_coding MGP_CASTEiJ_T0081855.1 MGP_CASTEiJ_G0030736.1 mouse_genomes_project 7 9188194 9222962 - MGP_CASTEiJ_P0081855 Sult2a6 protein_coding protein_coding MGP_CASTEiJ_T0083322.1 MGP_CASTEiJ_G0031110.1 mouse_genomes_project 7 25303846 25334741 - MGP_CASTEiJ_P0083322 Wtip protein_coding protein_coding MGP_CASTEiJ_T0083323.1 MGP_CASTEiJ_G0031110.1 mouse_genomes_project 7 25304468 25327852 - Wtip protein_coding processed_transcript MGP_CASTEiJ_T0083324.1 MGP_CASTEiJ_G0031110.1 mouse_genomes_project 7 25304519 25312881 - Wtip protein_coding retained_intron MGP_CASTEiJ_T0083325.1 MGP_CASTEiJ_G0031110.1 mouse_genomes_project 7 25304529 25332648 - MGP_CASTEiJ_P0083325 Wtip protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083326.1 MGP_CASTEiJ_G0031110.1 mouse_genomes_project 7 25310008 25332932 - MGP_CASTEiJ_P0083326 Wtip protein_coding unknown_likely_coding MGP_CASTEiJ_T0102544.1 MGP_CASTEiJ_G0039268.1 mouse_genomes_project 7 41164846 41165466 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0084168.1 MGP_CASTEiJ_G0031322.1 mouse_genomes_project 7 41290979 41303973 - MGP_CASTEiJ_P0084168 Mrgprb1 protein_coding protein_coding MGP_CASTEiJ_T0084169.1 MGP_CASTEiJ_G0031322.1 mouse_genomes_project 7 41293766 41303926 - MGP_CASTEiJ_P0084169 Mrgprb1 protein_coding protein_coding MGP_CASTEiJ_T0084170.1 MGP_CASTEiJ_G0031322.1 mouse_genomes_project 7 41293996 41303877 - MGP_CASTEiJ_P0084170 Mrgprb1 protein_coding protein_coding MGP_CASTEiJ_T0084398.1 MGP_CASTEiJ_G0031374.1 mouse_genomes_project 7 57408075 57414031 - MGP_CASTEiJ_P0084398 Ndnl2 protein_coding protein_coding MGP_CASTEiJ_T0002212.1 MGP_CASTEiJ_G0002131.1 mouse_genomes_project 7 73941231 73941790 - TEC TEC MGP_CASTEiJ_T0002136.1 MGP_CASTEiJ_G0002056.1 mouse_genomes_project 7 26333369 26333986 - TEC TEC MGP_CASTEiJ_T0085626.1 MGP_CASTEiJ_G0031692.1 mouse_genomes_project 7 98367447 98368401 - MGP_CASTEiJ_P0085626 Olfr616 protein_coding protein_coding MGP_CASTEiJ_T0086370.1 MGP_CASTEiJ_G0031966.1 mouse_genomes_project 7 116622708 116633289 - MGP_CASTEiJ_P0086370 Igsf6 protein_coding protein_coding MGP_CASTEiJ_T0085726.1 MGP_CASTEiJ_G0031772.1 mouse_genomes_project 7 100435972 100436941 - MGP_CASTEiJ_P0085726 Olfr691 protein_coding protein_coding MGP_CASTEiJ_T0098772.1 MGP_CASTEiJ_G0035703.1 mouse_genomes_project 7 74972303 74972430 + Mir1839 scaRNA scaRNA MGP_CASTEiJ_T0010587.1 MGP_CASTEiJ_G0008775.1 mouse_genomes_project 7 54660486 54660574 - Mir344i miRNA miRNA MGP_CASTEiJ_T0083382.1 MGP_CASTEiJ_G0031119.1 mouse_genomes_project 7 26187359 26325127 + MGP_CASTEiJ_P0083382 Pepd protein_coding protein_coding MGP_CASTEiJ_T0083383.1 MGP_CASTEiJ_G0031119.1 mouse_genomes_project 7 26196352 26325131 + MGP_CASTEiJ_P0083383 Pepd protein_coding unknown_likely_coding MGP_CASTEiJ_T0083384.1 MGP_CASTEiJ_G0031119.1 mouse_genomes_project 7 26222590 26302002 + MGP_CASTEiJ_P0083384 Pepd protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083385.1 MGP_CASTEiJ_G0031119.1 mouse_genomes_project 7 26246213 26321155 + Pepd protein_coding retained_intron MGP_CASTEiJ_T0083386.1 MGP_CASTEiJ_G0031119.1 mouse_genomes_project 7 26246440 26257749 + Pepd protein_coding retained_intron MGP_CASTEiJ_T0083387.1 MGP_CASTEiJ_G0031119.1 mouse_genomes_project 7 26320902 26325126 + Pepd protein_coding retained_intron MGP_CASTEiJ_T0083388.1 MGP_CASTEiJ_G0031119.1 mouse_genomes_project 7 26323603 26324948 + Pepd protein_coding retained_intron MGP_CASTEiJ_T0084219.1 MGP_CASTEiJ_G0031335.1 mouse_genomes_project 7 43486405 43487746 + MGP_CASTEiJ_P0084219 4933405O20Rik protein_coding protein_coding MGP_CASTEiJ_T0102557.1 MGP_CASTEiJ_G0039281.1 mouse_genomes_project 7 78932256 78967295 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0082916.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21879668 22093554 - MGP_CASTEiJ_P0082916 Sipa1l3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082917.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21879674 21942929 - MGP_CASTEiJ_P0082917 Sipa1l3 protein_coding protein_coding MGP_CASTEiJ_T0082918.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21879680 21912991 - Sipa1l3 protein_coding retained_intron MGP_CASTEiJ_T0082919.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21879680 22080087 - MGP_CASTEiJ_P0082919 Sipa1l3 protein_coding protein_coding MGP_CASTEiJ_T0082920.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21879680 22080087 - MGP_CASTEiJ_P0082920 Sipa1l3 protein_coding protein_coding MGP_CASTEiJ_T0082921.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21880639 21912913 - Sipa1l3 protein_coding retained_intron MGP_CASTEiJ_T0082922.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21881132 21887755 - MGP_CASTEiJ_P0082922 Sipa1l3 protein_coding protein_coding MGP_CASTEiJ_T0082923.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21881376 21965763 - MGP_CASTEiJ_P0082923 Sipa1l3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082924.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21881426 21929522 - MGP_CASTEiJ_P0082924 Sipa1l3 protein_coding protein_coding MGP_CASTEiJ_T0082925.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21882711 21900663 - Sipa1l3 protein_coding retained_intron MGP_CASTEiJ_T0082926.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21889833 21897867 - Sipa1l3 protein_coding retained_intron MGP_CASTEiJ_T0082927.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21927251 21928992 - Sipa1l3 protein_coding retained_intron MGP_CASTEiJ_T0082928.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21928403 21929530 - MGP_CASTEiJ_P0082928 Sipa1l3 protein_coding protein_coding MGP_CASTEiJ_T0082929.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21932511 21943069 - Sipa1l3 protein_coding retained_intron MGP_CASTEiJ_T0082930.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21949613 22080079 - Sipa1l3 protein_coding processed_transcript MGP_CASTEiJ_T0082931.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21965781 22093286 - MGP_CASTEiJ_P0082931 Sipa1l3 protein_coding protein_coding MGP_CASTEiJ_T0082932.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21965886 22093315 - Sipa1l3 protein_coding processed_transcript MGP_CASTEiJ_T0082933.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 21965959 22093289 - Sipa1l3 protein_coding processed_transcript MGP_CASTEiJ_T0082934.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 22066615 22093234 - Sipa1l3 protein_coding processed_transcript MGP_CASTEiJ_T0082935.1 MGP_CASTEiJ_G0031021.1 mouse_genomes_project 7 22091443 22093229 - Sipa1l3 protein_coding processed_transcript MGP_CASTEiJ_T0082781.1 MGP_CASTEiJ_G0030990.1 mouse_genomes_project 7 21039857 21041186 + MGP_CASTEiJ_P0082781 Sycn protein_coding protein_coding MGP_CASTEiJ_T0082320.1 MGP_CASTEiJ_G0030875.1 mouse_genomes_project 7 16643904 16662805 + MGP_CASTEiJ_P0082320 Plaur protein_coding unknown_likely_coding MGP_CASTEiJ_T0082321.1 MGP_CASTEiJ_G0030875.1 mouse_genomes_project 7 16644401 16652166 + Plaur protein_coding retained_intron MGP_CASTEiJ_T0082322.1 MGP_CASTEiJ_G0030875.1 mouse_genomes_project 7 16644411 16659811 + Plaur protein_coding retained_intron MGP_CASTEiJ_T0082323.1 MGP_CASTEiJ_G0030875.1 mouse_genomes_project 7 16644416 16662797 + Plaur protein_coding retained_intron MGP_CASTEiJ_T0082324.1 MGP_CASTEiJ_G0030875.1 mouse_genomes_project 7 16644416 16658843 + MGP_CASTEiJ_P0082324 Plaur protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082325.1 MGP_CASTEiJ_G0030875.1 mouse_genomes_project 7 16644416 16662559 + MGP_CASTEiJ_P0082325 Plaur protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087550.1 MGP_CASTEiJ_G0032219.1 mouse_genomes_project 7 137761038 137763908 + MGP_CASTEiJ_P0087550 Urah protein_coding protein_coding MGP_CASTEiJ_T0087551.1 MGP_CASTEiJ_G0032219.1 mouse_genomes_project 7 137761299 137763987 + MGP_CASTEiJ_P0087551 Urah protein_coding protein_coding MGP_CASTEiJ_T0087552.1 MGP_CASTEiJ_G0032219.1 mouse_genomes_project 7 137761317 137763992 + MGP_CASTEiJ_P0087552 Urah protein_coding protein_coding MGP_CASTEiJ_T0087553.1 MGP_CASTEiJ_G0032219.1 mouse_genomes_project 7 137761354 137763089 + Urah protein_coding retained_intron MGP_CASTEiJ_T0082501.1 MGP_CASTEiJ_G0030918.1 mouse_genomes_project 7 17960913 17969791 + MGP_CASTEiJ_P0082501 Exosc5 protein_coding protein_coding MGP_CASTEiJ_T0082502.1 MGP_CASTEiJ_G0030918.1 mouse_genomes_project 7 17960940 17973225 + MGP_CASTEiJ_P0082502 Exosc5 protein_coding protein_coding MGP_CASTEiJ_T0082503.1 MGP_CASTEiJ_G0030918.1 mouse_genomes_project 7 17960961 17969791 + Exosc5 protein_coding retained_intron MGP_CASTEiJ_T0082504.1 MGP_CASTEiJ_G0030918.1 mouse_genomes_project 7 17960961 17968068 + MGP_CASTEiJ_P0082504 Exosc5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082505.1 MGP_CASTEiJ_G0030918.1 mouse_genomes_project 7 17960967 17966169 + MGP_CASTEiJ_P0082505 Exosc5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082506.1 MGP_CASTEiJ_G0030918.1 mouse_genomes_project 7 17966154 17968536 + Exosc5 protein_coding retained_intron MGP_CASTEiJ_T0083976.1 MGP_CASTEiJ_G0031265.1 mouse_genomes_project 7 38104381 38118616 + MGP_CASTEiJ_P0083976 Hsd17b14 protein_coding protein_coding MGP_CASTEiJ_T0083977.1 MGP_CASTEiJ_G0031265.1 mouse_genomes_project 7 38104425 38119050 + MGP_CASTEiJ_P0083977 Hsd17b14 protein_coding protein_coding MGP_CASTEiJ_T0083978.1 MGP_CASTEiJ_G0031265.1 mouse_genomes_project 7 38105523 38118613 + Hsd17b14 protein_coding retained_intron MGP_CASTEiJ_T0083979.1 MGP_CASTEiJ_G0031265.1 mouse_genomes_project 7 38108540 38117309 + Hsd17b14 protein_coding retained_intron MGP_CASTEiJ_T0083980.1 MGP_CASTEiJ_G0031265.1 mouse_genomes_project 7 38111393 38117484 + Hsd17b14 protein_coding processed_transcript MGP_CASTEiJ_T0083981.1 MGP_CASTEiJ_G0031265.1 mouse_genomes_project 7 38111404 38117983 + Hsd17b14 protein_coding processed_transcript MGP_CASTEiJ_T0083982.1 MGP_CASTEiJ_G0031265.1 mouse_genomes_project 7 38112323 38117501 + Hsd17b14 protein_coding processed_transcript MGP_CASTEiJ_T0082167.1 MGP_CASTEiJ_G0030825.1 mouse_genomes_project 7 14225777 14264611 - MGP_CASTEiJ_P0082167 Mark4 protein_coding protein_coding MGP_CASTEiJ_T0082168.1 MGP_CASTEiJ_G0030825.1 mouse_genomes_project 7 14226049 14264611 - MGP_CASTEiJ_P0082168 Mark4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083349.1 MGP_CASTEiJ_G0031114.1 mouse_genomes_project 7 25449201 25530979 - MGP_CASTEiJ_P0083349 4931406P16Rik protein_coding protein_coding MGP_CASTEiJ_T0083350.1 MGP_CASTEiJ_G0031114.1 mouse_genomes_project 7 25449208 25501649 - MGP_CASTEiJ_P0083350 4931406P16Rik protein_coding protein_coding MGP_CASTEiJ_T0083351.1 MGP_CASTEiJ_G0031114.1 mouse_genomes_project 7 25450072 25530950 - MGP_CASTEiJ_P0083351 4931406P16Rik protein_coding protein_coding MGP_CASTEiJ_T0083352.1 MGP_CASTEiJ_G0031114.1 mouse_genomes_project 7 25451613 25457899 - MGP_CASTEiJ_P0083352 4931406P16Rik protein_coding protein_coding MGP_CASTEiJ_T0083353.1 MGP_CASTEiJ_G0031114.1 mouse_genomes_project 7 25452590 25457710 - 4931406P16Rik protein_coding retained_intron MGP_CASTEiJ_T0083355.1 MGP_CASTEiJ_G0031114.1 mouse_genomes_project 7 25468365 25471538 - 4931406P16Rik protein_coding retained_intron MGP_CASTEiJ_T0083356.1 MGP_CASTEiJ_G0031114.1 mouse_genomes_project 7 25500004 25530978 - 4931406P16Rik protein_coding retained_intron MGP_CASTEiJ_T0083357.1 MGP_CASTEiJ_G0031114.1 mouse_genomes_project 7 25501526 25530973 - 4931406P16Rik protein_coding processed_transcript MGP_CASTEiJ_T0083358.1 MGP_CASTEiJ_G0031114.1 mouse_genomes_project 7 25501612 25522767 - 4931406P16Rik protein_coding processed_transcript MGP_CASTEiJ_T0083359.1 MGP_CASTEiJ_G0031114.1 mouse_genomes_project 7 25529494 25530936 - 4931406P16Rik protein_coding processed_transcript MGP_CASTEiJ_T0086321.1 MGP_CASTEiJ_G0031953.1 mouse_genomes_project 7 115726577 115771649 + Abca14 protein_coding processed_transcript MGP_CASTEiJ_T0086322.1 MGP_CASTEiJ_G0031953.1 mouse_genomes_project 7 115726580 115829049 + MGP_CASTEiJ_P0086322 Abca14 protein_coding protein_coding MGP_CASTEiJ_T0086323.1 MGP_CASTEiJ_G0031953.1 mouse_genomes_project 7 115726620 115735615 + Abca14 protein_coding retained_intron MGP_CASTEiJ_T0086324.1 MGP_CASTEiJ_G0031953.1 mouse_genomes_project 7 115726623 115740135 + Abca14 protein_coding processed_transcript MGP_CASTEiJ_T0008679.1 MGP_CASTEiJ_G0007022.1 mouse_genomes_project 7 66071623 66074903 + Gm44725 lincRNA lincRNA MGP_CASTEiJ_T0087995.1 MGP_CASTEiJ_G0032304.1 mouse_genomes_project 7 140982606 141001118 + MGP_CASTEiJ_P0087995 Dhcr7 protein_coding protein_coding MGP_CASTEiJ_T0087996.1 MGP_CASTEiJ_G0032304.1 mouse_genomes_project 7 140982794 141001113 + MGP_CASTEiJ_P0087996 Dhcr7 protein_coding protein_coding MGP_CASTEiJ_T0087997.1 MGP_CASTEiJ_G0032304.1 mouse_genomes_project 7 140982951 140998293 + MGP_CASTEiJ_P0087997 Dhcr7 protein_coding protein_coding MGP_CASTEiJ_T0087998.1 MGP_CASTEiJ_G0032304.1 mouse_genomes_project 7 140982955 140995873 + MGP_CASTEiJ_P0087998 Dhcr7 protein_coding protein_coding MGP_CASTEiJ_T0087999.1 MGP_CASTEiJ_G0032304.1 mouse_genomes_project 7 140982975 140990626 + Dhcr7 protein_coding processed_transcript MGP_CASTEiJ_T0088000.1 MGP_CASTEiJ_G0032304.1 mouse_genomes_project 7 140993667 140996026 + Dhcr7 protein_coding processed_transcript MGP_CASTEiJ_T0088001.1 MGP_CASTEiJ_G0032304.1 mouse_genomes_project 7 140994072 141000132 + Dhcr7 protein_coding processed_transcript MGP_CASTEiJ_T0082333.1 MGP_CASTEiJ_G0030879.1 mouse_genomes_project 7 16740480 16748212 - MGP_CASTEiJ_P0082333 Pinlyp protein_coding protein_coding MGP_CASTEiJ_T0081482.1 MGP_CASTEiJ_G0030606.1 mouse_genomes_project 7 1046878 1049345 - MGP_CASTEiJ_P0081482 Leng9 protein_coding protein_coding MGP_CASTEiJ_T0082801.1 MGP_CASTEiJ_G0030995.1 mouse_genomes_project 7 21273861 21274299 - Mrps12 protein_coding processed_transcript MGP_CASTEiJ_T0082802.1 MGP_CASTEiJ_G0030995.1 mouse_genomes_project 7 21273861 21276111 - MGP_CASTEiJ_P0082802 Mrps12 protein_coding protein_coding MGP_CASTEiJ_T0082803.1 MGP_CASTEiJ_G0030995.1 mouse_genomes_project 7 21273862 21276161 - MGP_CASTEiJ_P0082803 Mrps12 protein_coding protein_coding MGP_CASTEiJ_T0082804.1 MGP_CASTEiJ_G0030995.1 mouse_genomes_project 7 21274123 21275141 - MGP_CASTEiJ_P0082804 Mrps12 protein_coding protein_coding MGP_CASTEiJ_T0083650.1 MGP_CASTEiJ_G0031189.1 mouse_genomes_project 7 36489484 36490629 - MGP_CASTEiJ_P0083650 Klk1b3 protein_coding protein_coding MGP_CASTEiJ_T0084269.1 MGP_CASTEiJ_G0031347.1 mouse_genomes_project 7 48745332 48772234 - MGP_CASTEiJ_P0084269 Nipa2 protein_coding protein_coding MGP_CASTEiJ_T0084270.1 MGP_CASTEiJ_G0031347.1 mouse_genomes_project 7 48745332 48772197 - MGP_CASTEiJ_P0084270 Nipa2 protein_coding protein_coding MGP_CASTEiJ_T0084271.1 MGP_CASTEiJ_G0031347.1 mouse_genomes_project 7 48745332 48772003 - MGP_CASTEiJ_P0084271 Nipa2 protein_coding protein_coding MGP_CASTEiJ_T0084272.1 MGP_CASTEiJ_G0031347.1 mouse_genomes_project 7 48745332 48772208 - MGP_CASTEiJ_P0084272 Nipa2 protein_coding protein_coding MGP_CASTEiJ_T0084273.1 MGP_CASTEiJ_G0031347.1 mouse_genomes_project 7 48747292 48772150 - Nipa2 protein_coding processed_transcript MGP_CASTEiJ_T0084274.1 MGP_CASTEiJ_G0031347.1 mouse_genomes_project 7 48747557 48752125 - Nipa2 protein_coding retained_intron MGP_CASTEiJ_T0084275.1 MGP_CASTEiJ_G0031347.1 mouse_genomes_project 7 48749864 48772234 - MGP_CASTEiJ_P0084275 Nipa2 protein_coding protein_coding MGP_CASTEiJ_T0084276.1 MGP_CASTEiJ_G0031347.1 mouse_genomes_project 7 48749912 48772188 - MGP_CASTEiJ_P0084276 Nipa2 protein_coding protein_coding MGP_CASTEiJ_T0084277.1 MGP_CASTEiJ_G0031347.1 mouse_genomes_project 7 48756008 48772226 - Nipa2 protein_coding retained_intron MGP_CASTEiJ_T0084278.1 MGP_CASTEiJ_G0031347.1 mouse_genomes_project 7 48756185 48760476 - Nipa2 protein_coding retained_intron MGP_CASTEiJ_T0084279.1 MGP_CASTEiJ_G0031347.1 mouse_genomes_project 7 48760138 48771941 - MGP_CASTEiJ_P0084279 Nipa2 protein_coding protein_coding MGP_CASTEiJ_T0086106.1 MGP_CASTEiJ_G0031908.1 mouse_genomes_project 7 109637579 109777024 + MGP_CASTEiJ_P0086106 Pde3b protein_coding protein_coding MGP_CASTEiJ_T0086107.1 MGP_CASTEiJ_G0031908.1 mouse_genomes_project 7 109735180 109737406 + Pde3b protein_coding retained_intron MGP_CASTEiJ_T0086108.1 MGP_CASTEiJ_G0031908.1 mouse_genomes_project 7 109754690 109767780 + Pde3b protein_coding retained_intron MGP_CASTEiJ_T0085603.1 MGP_CASTEiJ_G0031670.1 mouse_genomes_project 7 97832917 97833749 + MGP_CASTEiJ_P0085603 protein_coding protein_coding MGP_CASTEiJ_T0087932.1 MGP_CASTEiJ_G0032289.1 mouse_genomes_project 7 140149428 140166432 + MGP_CASTEiJ_P0087932 Cd81 protein_coding protein_coding MGP_CASTEiJ_T0087933.1 MGP_CASTEiJ_G0032289.1 mouse_genomes_project 7 140149483 140164094 + Cd81 protein_coding retained_intron MGP_CASTEiJ_T0087934.1 MGP_CASTEiJ_G0032289.1 mouse_genomes_project 7 140155399 140165660 + Cd81 protein_coding processed_transcript MGP_CASTEiJ_T0087935.1 MGP_CASTEiJ_G0032289.1 mouse_genomes_project 7 140164697 140166103 + Cd81 protein_coding retained_intron MGP_CASTEiJ_T0005106.1 MGP_CASTEiJ_G0004350.1 mouse_genomes_project 7 77126278 77163106 - Gm16638 antisense antisense MGP_CASTEiJ_T0008678.1 MGP_CASTEiJ_G0007021.1 mouse_genomes_project 7 65639384 65639723 - Gm28744 lincRNA lincRNA MGP_CASTEiJ_T0084556.1 MGP_CASTEiJ_G0031403.1 mouse_genomes_project 7 66982040 67058609 - MGP_CASTEiJ_P0084556 St8sia2 protein_coding protein_coding MGP_CASTEiJ_T0084557.1 MGP_CASTEiJ_G0031403.1 mouse_genomes_project 7 67003710 67058625 - MGP_CASTEiJ_P0084557 St8sia2 protein_coding protein_coding MGP_CASTEiJ_T0015296.1 MGP_CASTEiJ_G0013459.1 mouse_genomes_project 7 108514398 108514801 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084088.1 MGP_CASTEiJ_G0031296.1 mouse_genomes_project 7 38862905 38932589 + MGP_CASTEiJ_P0084088 Otog protein_coding protein_coding MGP_CASTEiJ_T0081787.1 MGP_CASTEiJ_G0030718.1 mouse_genomes_project 7 8121030 8121799 - Slc27a5 protein_coding processed_transcript MGP_CASTEiJ_T0081788.1 MGP_CASTEiJ_G0030718.1 mouse_genomes_project 7 8121030 8131976 - MGP_CASTEiJ_P0081788 Slc27a5 protein_coding protein_coding MGP_CASTEiJ_T0081789.1 MGP_CASTEiJ_G0030718.1 mouse_genomes_project 7 8121036 8132018 - MGP_CASTEiJ_P0081789 Slc27a5 protein_coding protein_coding MGP_CASTEiJ_T0081790.1 MGP_CASTEiJ_G0030718.1 mouse_genomes_project 7 8125981 8129345 - Slc27a5 protein_coding retained_intron MGP_CASTEiJ_T0081791.1 MGP_CASTEiJ_G0030718.1 mouse_genomes_project 7 8125981 8131503 - MGP_CASTEiJ_P0081791 Slc27a5 protein_coding protein_coding MGP_CASTEiJ_T0087863.1 MGP_CASTEiJ_G0032280.1 mouse_genomes_project 7 139580613 139596298 - MGP_CASTEiJ_P0087863 protein_coding protein_coding MGP_CASTEiJ_T0087864.1 MGP_CASTEiJ_G0032280.1 mouse_genomes_project 7 139582289 139586515 - protein_coding processed_transcript MGP_CASTEiJ_T0085899.1 MGP_CASTEiJ_G0031851.1 mouse_genomes_project 7 103539271 103540204 + MGP_CASTEiJ_P0085899 Olfr508 protein_coding protein_coding MGP_CASTEiJ_T0085832.1 MGP_CASTEiJ_G0031792.1 mouse_genomes_project 7 101525322 101537657 - MGP_CASTEiJ_P0085832 protein_coding protein_coding MGP_CASTEiJ_T0085638.1 MGP_CASTEiJ_G0031704.1 mouse_genomes_project 7 98609267 98612595 - MGP_CASTEiJ_P0085638 Olfr68 protein_coding protein_coding MGP_CASTEiJ_T0008811.1 MGP_CASTEiJ_G0007106.1 mouse_genomes_project 7 125953199 125971019 + Gm4265 lincRNA lincRNA MGP_CASTEiJ_T0085056.1 MGP_CASTEiJ_G0031529.1 mouse_genomes_project 7 84095311 84096409 + MGP_CASTEiJ_P0085056 protein_coding protein_coding MGP_CASTEiJ_T0010597.1 MGP_CASTEiJ_G0008785.1 mouse_genomes_project 7 80361245 80361341 - Gm23192 miRNA miRNA MGP_CASTEiJ_T0087401.1 MGP_CASTEiJ_G0032167.1 mouse_genomes_project 7 134140554 134174422 + MGP_CASTEiJ_P0087401 Glrx3 protein_coding protein_coding MGP_CASTEiJ_T0085296.1 MGP_CASTEiJ_G0031584.1 mouse_genomes_project 7 94351208 94368203 - MGP_CASTEiJ_P0085296 Neu3 protein_coding protein_coding MGP_CASTEiJ_T0102573.1 MGP_CASTEiJ_G0039297.1 mouse_genomes_project 7 80418692 80419327 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008819.1 MGP_CASTEiJ_G0007113.1 mouse_genomes_project 7 131735937 131740237 - 1700120G07Rik lincRNA lincRNA MGP_CASTEiJ_T0008820.1 MGP_CASTEiJ_G0007113.1 mouse_genomes_project 7 131737075 131740237 - 1700120G07Rik lincRNA lincRNA MGP_CASTEiJ_T0084006.1 MGP_CASTEiJ_G0031275.1 mouse_genomes_project 7 38280478 38287246 + MGP_CASTEiJ_P0084006 Car11 protein_coding protein_coding MGP_CASTEiJ_T0015268.1 MGP_CASTEiJ_G0013431.1 mouse_genomes_project 7 89817333 89817700 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005035.1 MGP_CASTEiJ_G0004297.1 mouse_genomes_project 7 19469369 19475452 - Gm15883 antisense antisense MGP_CASTEiJ_T0008815.1 MGP_CASTEiJ_G0007110.1 mouse_genomes_project 7 129126685 129169887 - 1500002F19Rik lincRNA lincRNA MGP_CASTEiJ_T0083058.1 MGP_CASTEiJ_G0031056.1 mouse_genomes_project 7 23057997 23066869 + MGP_CASTEiJ_P0083058 Nfkbid protein_coding protein_coding MGP_CASTEiJ_T0083059.1 MGP_CASTEiJ_G0031056.1 mouse_genomes_project 7 23058672 23066868 + MGP_CASTEiJ_P0083059 Nfkbid protein_coding protein_coding MGP_CASTEiJ_T0083060.1 MGP_CASTEiJ_G0031056.1 mouse_genomes_project 7 23059528 23066869 + MGP_CASTEiJ_P0083060 Nfkbid protein_coding protein_coding MGP_CASTEiJ_T0083061.1 MGP_CASTEiJ_G0031056.1 mouse_genomes_project 7 23061806 23062510 + Nfkbid protein_coding retained_intron MGP_CASTEiJ_T0008602.1 MGP_CASTEiJ_G0006963.1 mouse_genomes_project 7 25664542 25752322 + Gm12766 lincRNA lincRNA MGP_CASTEiJ_T0087355.1 MGP_CASTEiJ_G0032152.1 mouse_genomes_project 7 129993493 130049011 - MGP_CASTEiJ_P0087355 Dhx32 protein_coding protein_coding MGP_CASTEiJ_T0087356.1 MGP_CASTEiJ_G0032152.1 mouse_genomes_project 7 129993497 130032641 - Dhx32 protein_coding processed_transcript MGP_CASTEiJ_T0087357.1 MGP_CASTEiJ_G0032152.1 mouse_genomes_project 7 129993661 130055991 - MGP_CASTEiJ_P0087357 Dhx32 protein_coding protein_coding MGP_CASTEiJ_T0087358.1 MGP_CASTEiJ_G0032152.1 mouse_genomes_project 7 129993701 130049018 - MGP_CASTEiJ_P0087358 Dhx32 protein_coding protein_coding MGP_CASTEiJ_T0087359.1 MGP_CASTEiJ_G0032152.1 mouse_genomes_project 7 129995595 130004069 - Dhx32 protein_coding processed_transcript MGP_CASTEiJ_T0087360.1 MGP_CASTEiJ_G0032152.1 mouse_genomes_project 7 130022134 130031845 - Dhx32 protein_coding processed_transcript MGP_CASTEiJ_T0087361.1 MGP_CASTEiJ_G0032152.1 mouse_genomes_project 7 130022442 130032201 - MGP_CASTEiJ_P0087361 Dhx32 protein_coding protein_coding MGP_CASTEiJ_T0087362.1 MGP_CASTEiJ_G0032152.1 mouse_genomes_project 7 130022587 130048895 - MGP_CASTEiJ_P0087362 Dhx32 protein_coding protein_coding MGP_CASTEiJ_T0087363.1 MGP_CASTEiJ_G0032152.1 mouse_genomes_project 7 130032050 130048717 - MGP_CASTEiJ_P0087363 Dhx32 protein_coding protein_coding MGP_CASTEiJ_T0087636.1 MGP_CASTEiJ_G0032242.1 mouse_genomes_project 7 138169504 138185477 + MGP_CASTEiJ_P0087636 Lrrc56 protein_coding unknown_likely_coding MGP_CASTEiJ_T0087637.1 MGP_CASTEiJ_G0032242.1 mouse_genomes_project 7 138169540 138185474 + MGP_CASTEiJ_P0087637 Lrrc56 protein_coding protein_coding MGP_CASTEiJ_T0087638.1 MGP_CASTEiJ_G0032242.1 mouse_genomes_project 7 138169562 138176340 + Lrrc56 protein_coding retained_intron MGP_CASTEiJ_T0087639.1 MGP_CASTEiJ_G0032242.1 mouse_genomes_project 7 138170525 138173689 + Lrrc56 protein_coding processed_transcript MGP_CASTEiJ_T0087640.1 MGP_CASTEiJ_G0032242.1 mouse_genomes_project 7 138172329 138175236 + Lrrc56 protein_coding processed_transcript MGP_CASTEiJ_T0002157.1 MGP_CASTEiJ_G0002077.1 mouse_genomes_project 7 42023556 42027132 + TEC TEC MGP_CASTEiJ_T0010602.1 MGP_CASTEiJ_G0008790.1 mouse_genomes_project 7 96153662 96153730 + Mir139 miRNA miRNA MGP_CASTEiJ_T0085452.1 MGP_CASTEiJ_G0031614.1 mouse_genomes_project 7 96529500 96533928 + MGP_CASTEiJ_P0085452 Phox2a protein_coding protein_coding MGP_CASTEiJ_T0102483.1 MGP_CASTEiJ_G0039208.1 mouse_genomes_project 7 9771129 9771386 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100029.1 MGP_CASTEiJ_G0036942.1 mouse_genomes_project 7 103059708 103059766 - Gm25424 snRNA snRNA MGP_CASTEiJ_T0082088.1 MGP_CASTEiJ_G0030804.1 mouse_genomes_project 7 13855383 13859336 + MGP_CASTEiJ_P0082088 Six5 protein_coding protein_coding MGP_CASTEiJ_T0015308.1 MGP_CASTEiJ_G0013471.1 mouse_genomes_project 7 121260306 121261640 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0087586.1 MGP_CASTEiJ_G0032226.1 mouse_genomes_project 7 137828293 137829797 - MGP_CASTEiJ_P0087586 Cox8b protein_coding protein_coding MGP_CASTEiJ_T0087697.1 MGP_CASTEiJ_G0032253.1 mouse_genomes_project 7 138384449 138396842 + MGP_CASTEiJ_P0087697 Taldo1 protein_coding protein_coding MGP_CASTEiJ_T0087698.1 MGP_CASTEiJ_G0032253.1 mouse_genomes_project 7 138384493 138393008 + Taldo1 protein_coding retained_intron MGP_CASTEiJ_T0087699.1 MGP_CASTEiJ_G0032253.1 mouse_genomes_project 7 138394045 138396089 + Taldo1 protein_coding retained_intron MGP_CASTEiJ_T0099008.1 MGP_CASTEiJ_G0035928.1 mouse_genomes_project 7 83474288 83506882 - sense_intronic sense_intronic MGP_CASTEiJ_T0005019.1 MGP_CASTEiJ_G0004285.1 mouse_genomes_project 7 14033258 14034506 + 1700058P15Rik antisense antisense MGP_CASTEiJ_T0085855.1 MGP_CASTEiJ_G0031814.1 mouse_genomes_project 7 101964237 101965212 + MGP_CASTEiJ_P0085855 Olfr713 protein_coding protein_coding MGP_CASTEiJ_T0086834.1 MGP_CASTEiJ_G0032049.1 mouse_genomes_project 7 122933832 122939443 - MGP_CASTEiJ_P0086834 Spn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086835.1 MGP_CASTEiJ_G0032049.1 mouse_genomes_project 7 122935084 122938198 - MGP_CASTEiJ_P0086835 Spn protein_coding protein_coding MGP_CASTEiJ_T0086836.1 MGP_CASTEiJ_G0032049.1 mouse_genomes_project 7 122935316 122939452 - MGP_CASTEiJ_P0086836 Spn protein_coding protein_coding MGP_CASTEiJ_T0082571.1 MGP_CASTEiJ_G0030935.1 mouse_genomes_project 7 19350628 19370228 + MGP_CASTEiJ_P0082571 Cyp2a22 protein_coding protein_coding MGP_CASTEiJ_T0082732.1 MGP_CASTEiJ_G0030979.1 mouse_genomes_project 7 20766206 20774934 - MGP_CASTEiJ_P0082732 Dll3 protein_coding protein_coding MGP_CASTEiJ_T0082733.1 MGP_CASTEiJ_G0030979.1 mouse_genomes_project 7 20766252 20767135 - Dll3 protein_coding processed_transcript MGP_CASTEiJ_T0082734.1 MGP_CASTEiJ_G0030979.1 mouse_genomes_project 7 20771376 20774457 - Dll3 protein_coding retained_intron MGP_CASTEiJ_T0081745.1 MGP_CASTEiJ_G0030704.1 mouse_genomes_project 7 7471120 7472116 - MGP_CASTEiJ_P0081745 Vmn1r83 protein_coding protein_coding MGP_CASTEiJ_T0082020.1 MGP_CASTEiJ_G0030784.1 mouse_genomes_project 7 12389894 12442678 + MGP_CASTEiJ_P0082020 Ceacam5 protein_coding protein_coding MGP_CASTEiJ_T0087408.1 MGP_CASTEiJ_G0032170.1 mouse_genomes_project 7 135650168 135677074 + Ppp2r2d protein_coding retained_intron MGP_CASTEiJ_T0087409.1 MGP_CASTEiJ_G0032170.1 mouse_genomes_project 7 135650448 135688576 + MGP_CASTEiJ_P0087409 Ppp2r2d protein_coding protein_coding MGP_CASTEiJ_T0087410.1 MGP_CASTEiJ_G0032170.1 mouse_genomes_project 7 135650475 135675158 + MGP_CASTEiJ_P0087410 Ppp2r2d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087411.1 MGP_CASTEiJ_G0032170.1 mouse_genomes_project 7 135650680 135675201 + Ppp2r2d protein_coding processed_transcript MGP_CASTEiJ_T0087412.1 MGP_CASTEiJ_G0032170.1 mouse_genomes_project 7 135650688 135688573 + MGP_CASTEiJ_P0087412 Ppp2r2d protein_coding protein_coding MGP_CASTEiJ_T0087413.1 MGP_CASTEiJ_G0032170.1 mouse_genomes_project 7 135650713 135681941 + MGP_CASTEiJ_P0087413 Ppp2r2d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087414.1 MGP_CASTEiJ_G0032170.1 mouse_genomes_project 7 135650953 135675176 + Ppp2r2d protein_coding processed_transcript MGP_CASTEiJ_T0087415.1 MGP_CASTEiJ_G0032170.1 mouse_genomes_project 7 135665244 135679642 + MGP_CASTEiJ_P0087415 Ppp2r2d protein_coding protein_coding MGP_CASTEiJ_T0087416.1 MGP_CASTEiJ_G0032170.1 mouse_genomes_project 7 135673783 135681935 + MGP_CASTEiJ_P0087416 Ppp2r2d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083228.1 MGP_CASTEiJ_G0031091.1 mouse_genomes_project 7 23655120 23670654 - MGP_CASTEiJ_P0083228 Lsr protein_coding protein_coding MGP_CASTEiJ_T0083229.1 MGP_CASTEiJ_G0031091.1 mouse_genomes_project 7 23655125 23670692 - MGP_CASTEiJ_P0083229 Lsr protein_coding protein_coding MGP_CASTEiJ_T0083230.1 MGP_CASTEiJ_G0031091.1 mouse_genomes_project 7 23655127 23670655 - MGP_CASTEiJ_P0083230 Lsr protein_coding protein_coding MGP_CASTEiJ_T0083231.1 MGP_CASTEiJ_G0031091.1 mouse_genomes_project 7 23655129 23670550 - MGP_CASTEiJ_P0083231 Lsr protein_coding protein_coding MGP_CASTEiJ_T0083232.1 MGP_CASTEiJ_G0031091.1 mouse_genomes_project 7 23655616 23670643 - MGP_CASTEiJ_P0083232 Lsr protein_coding protein_coding MGP_CASTEiJ_T0085724.1 MGP_CASTEiJ_G0031770.1 mouse_genomes_project 7 100412886 100413901 + MGP_CASTEiJ_P0085724 protein_coding protein_coding MGP_CASTEiJ_T0082551.1 MGP_CASTEiJ_G0030928.1 mouse_genomes_project 7 18641259 18659951 - MGP_CASTEiJ_P0082551 Nlrp9c protein_coding protein_coding MGP_CASTEiJ_T0082552.1 MGP_CASTEiJ_G0030928.1 mouse_genomes_project 7 18643187 18671242 - Nlrp9c protein_coding processed_transcript MGP_CASTEiJ_T0082553.1 MGP_CASTEiJ_G0030928.1 mouse_genomes_project 7 18643187 18671246 - Nlrp9c protein_coding retained_intron MGP_CASTEiJ_T0082554.1 MGP_CASTEiJ_G0030928.1 mouse_genomes_project 7 18657979 18671246 - Nlrp9c protein_coding retained_intron MGP_CASTEiJ_T0005044.1 MGP_CASTEiJ_G0004305.1 mouse_genomes_project 7 23159025 23165969 + Arhgap33os antisense antisense MGP_CASTEiJ_T0008592.1 MGP_CASTEiJ_G0006953.1 mouse_genomes_project 7 18123850 18127565 + Gm26707 lincRNA lincRNA MGP_CASTEiJ_T0002216.1 MGP_CASTEiJ_G0002135.1 mouse_genomes_project 7 95056531 95057456 + TEC TEC MGP_CASTEiJ_T0083197.1 MGP_CASTEiJ_G0031086.1 mouse_genomes_project 7 23548888 23565243 - MGP_CASTEiJ_P0083197 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083198.1 MGP_CASTEiJ_G0031086.1 mouse_genomes_project 7 23549284 23564998 - MGP_CASTEiJ_P0083198 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083199.1 MGP_CASTEiJ_G0031086.1 mouse_genomes_project 7 23549754 23565243 - MGP_CASTEiJ_P0083199 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083200.1 MGP_CASTEiJ_G0031086.1 mouse_genomes_project 7 23553920 23556701 - MGP_CASTEiJ_P0083200 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083201.1 MGP_CASTEiJ_G0031086.1 mouse_genomes_project 7 23560324 23564188 - protein_coding processed_transcript MGP_CASTEiJ_T0083202.1 MGP_CASTEiJ_G0031086.1 mouse_genomes_project 7 23561697 23565225 - MGP_CASTEiJ_P0083202 protein_coding protein_coding MGP_CASTEiJ_T0083203.1 MGP_CASTEiJ_G0031086.1 mouse_genomes_project 7 23561837 23562362 - protein_coding retained_intron MGP_CASTEiJ_T0083204.1 MGP_CASTEiJ_G0031086.1 mouse_genomes_project 7 23561877 23565242 - protein_coding processed_transcript MGP_CASTEiJ_T0083205.1 MGP_CASTEiJ_G0031086.1 mouse_genomes_project 7 23561916 23565242 - protein_coding processed_transcript MGP_CASTEiJ_T0083206.1 MGP_CASTEiJ_G0031086.1 mouse_genomes_project 7 23561992 23565232 - MGP_CASTEiJ_P0083206 protein_coding protein_coding MGP_CASTEiJ_T0083207.1 MGP_CASTEiJ_G0031086.1 mouse_genomes_project 7 23564156 23565306 - protein_coding processed_transcript MGP_CASTEiJ_T0081875.1 MGP_CASTEiJ_G0030746.1 mouse_genomes_project 7 10633098 10642970 - MGP_CASTEiJ_P0081875 Gltscr2 protein_coding protein_coding MGP_CASTEiJ_T0081876.1 MGP_CASTEiJ_G0030746.1 mouse_genomes_project 7 10634752 10642646 - Gltscr2 protein_coding retained_intron MGP_CASTEiJ_T0081877.1 MGP_CASTEiJ_G0030746.1 mouse_genomes_project 7 10634752 10642697 - MGP_CASTEiJ_P0081877 Gltscr2 protein_coding protein_coding MGP_CASTEiJ_T0081878.1 MGP_CASTEiJ_G0030746.1 mouse_genomes_project 7 10639749 10642951 - Gltscr2 protein_coding processed_transcript MGP_CASTEiJ_T0102558.1 MGP_CASTEiJ_G0039282.1 mouse_genomes_project 7 78932307 78933177 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015128.1 MGP_CASTEiJ_G0013291.1 mouse_genomes_project 7 7714719 7716165 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082275.1 MGP_CASTEiJ_G0030864.1 mouse_genomes_project 7 16336653 16354191 - MGP_CASTEiJ_P0082275 Zfp111 protein_coding protein_coding MGP_CASTEiJ_T0082276.1 MGP_CASTEiJ_G0030864.1 mouse_genomes_project 7 16339679 16346354 - MGP_CASTEiJ_P0082276 Zfp111 protein_coding protein_coding MGP_CASTEiJ_T0082277.1 MGP_CASTEiJ_G0030864.1 mouse_genomes_project 7 16340888 16357480 - MGP_CASTEiJ_P0082277 Zfp111 protein_coding protein_coding MGP_CASTEiJ_T0082278.1 MGP_CASTEiJ_G0030864.1 mouse_genomes_project 7 16342433 16354113 - Zfp111 protein_coding processed_transcript MGP_CASTEiJ_T0082279.1 MGP_CASTEiJ_G0030864.1 mouse_genomes_project 7 16347158 16354169 - Zfp111 protein_coding retained_intron MGP_CASTEiJ_T0082280.1 MGP_CASTEiJ_G0030864.1 mouse_genomes_project 7 16349678 16357480 - Zfp111 protein_coding processed_transcript MGP_CASTEiJ_T0010596.1 MGP_CASTEiJ_G0008784.1 mouse_genomes_project 7 74972364 74972437 + Mir1839 miRNA miRNA MGP_CASTEiJ_T0002237.1 MGP_CASTEiJ_G0002156.1 mouse_genomes_project 7 123092082 123094134 + TEC TEC MGP_CASTEiJ_T0002140.1 MGP_CASTEiJ_G0002060.1 mouse_genomes_project 7 28176782 28180807 + TEC TEC MGP_CASTEiJ_T0005038.1 MGP_CASTEiJ_G0004300.1 mouse_genomes_project 7 20384088 20387081 + Gm26891 antisense antisense MGP_CASTEiJ_T0085003.1 MGP_CASTEiJ_G0031508.1 mouse_genomes_project 7 80692012 80740813 + MGP_CASTEiJ_P0085003 protein_coding protein_coding MGP_CASTEiJ_T0085007.1 MGP_CASTEiJ_G0031508.1 mouse_genomes_project 7 80739881 80740813 + MGP_CASTEiJ_P0085007 protein_coding protein_coding MGP_CASTEiJ_T0085095.1 MGP_CASTEiJ_G0031539.1 mouse_genomes_project 7 86832144 86883703 - MGP_CASTEiJ_P0085095 Ankrd42 protein_coding protein_coding MGP_CASTEiJ_T0085096.1 MGP_CASTEiJ_G0031539.1 mouse_genomes_project 7 86834603 86883743 - MGP_CASTEiJ_P0085096 Ankrd42 protein_coding protein_coding MGP_CASTEiJ_T0085097.1 MGP_CASTEiJ_G0031539.1 mouse_genomes_project 7 86834619 86883737 - MGP_CASTEiJ_P0085097 Ankrd42 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085098.1 MGP_CASTEiJ_G0031539.1 mouse_genomes_project 7 86849708 86854595 - Ankrd42 protein_coding retained_intron MGP_CASTEiJ_T0085099.1 MGP_CASTEiJ_G0031539.1 mouse_genomes_project 7 86853404 86883636 - Ankrd42 protein_coding retained_intron MGP_CASTEiJ_T0085100.1 MGP_CASTEiJ_G0031539.1 mouse_genomes_project 7 86853654 86883731 - Ankrd42 protein_coding processed_transcript MGP_CASTEiJ_T0082993.1 MGP_CASTEiJ_G0031042.1 mouse_genomes_project 7 22811229 22821043 - MGP_CASTEiJ_P0082993 Capns1 protein_coding protein_coding MGP_CASTEiJ_T0082994.1 MGP_CASTEiJ_G0031042.1 mouse_genomes_project 7 22811277 22817265 - MGP_CASTEiJ_P0082994 Capns1 protein_coding protein_coding MGP_CASTEiJ_T0082995.1 MGP_CASTEiJ_G0031042.1 mouse_genomes_project 7 22811455 22814537 - Capns1 protein_coding processed_transcript MGP_CASTEiJ_T0082996.1 MGP_CASTEiJ_G0031042.1 mouse_genomes_project 7 22811770 22817940 - Capns1 protein_coding processed_transcript MGP_CASTEiJ_T0082997.1 MGP_CASTEiJ_G0031042.1 mouse_genomes_project 7 22811794 22816571 - Capns1 protein_coding processed_transcript MGP_CASTEiJ_T0082998.1 MGP_CASTEiJ_G0031042.1 mouse_genomes_project 7 22817704 22820915 - Capns1 protein_coding retained_intron MGP_CASTEiJ_T0085354.1 MGP_CASTEiJ_G0031599.1 mouse_genomes_project 7 95152027 95155138 + MGP_CASTEiJ_P0085354 Coa4 protein_coding protein_coding MGP_CASTEiJ_T0085355.1 MGP_CASTEiJ_G0031599.1 mouse_genomes_project 7 95152159 95154221 + MGP_CASTEiJ_P0085355 Coa4 protein_coding protein_coding MGP_CASTEiJ_T0081943.1 MGP_CASTEiJ_G0030766.1 mouse_genomes_project 7 11477650 11485882 + MGP_CASTEiJ_P0081943 Ceacam9 protein_coding protein_coding MGP_CASTEiJ_T0081944.1 MGP_CASTEiJ_G0030766.1 mouse_genomes_project 7 11477679 11484828 + MGP_CASTEiJ_P0081944 Ceacam9 protein_coding protein_coding MGP_CASTEiJ_T0008747.1 MGP_CASTEiJ_G0007066.1 mouse_genomes_project 7 94319188 94320762 - F730035P03Rik lincRNA lincRNA MGP_CASTEiJ_T0008775.1 MGP_CASTEiJ_G0007082.1 mouse_genomes_project 7 117187200 117188891 + 1700025J12Rik lincRNA lincRNA MGP_CASTEiJ_T0085399.1 MGP_CASTEiJ_G0031609.1 mouse_genomes_project 7 95956983 95972624 - MGP_CASTEiJ_P0085399 Atg16l2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085400.1 MGP_CASTEiJ_G0031609.1 mouse_genomes_project 7 95957205 95972685 - MGP_CASTEiJ_P0085400 Atg16l2 protein_coding protein_coding MGP_CASTEiJ_T0085401.1 MGP_CASTEiJ_G0031609.1 mouse_genomes_project 7 95957207 95958050 - Atg16l2 protein_coding retained_intron MGP_CASTEiJ_T0085402.1 MGP_CASTEiJ_G0031609.1 mouse_genomes_project 7 95957207 95972668 - MGP_CASTEiJ_P0085402 Atg16l2 protein_coding protein_coding MGP_CASTEiJ_T0085403.1 MGP_CASTEiJ_G0031609.1 mouse_genomes_project 7 95957216 95972848 - MGP_CASTEiJ_P0085403 Atg16l2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085404.1 MGP_CASTEiJ_G0031609.1 mouse_genomes_project 7 95957418 95958167 - Atg16l2 protein_coding retained_intron MGP_CASTEiJ_T0085405.1 MGP_CASTEiJ_G0031609.1 mouse_genomes_project 7 95958234 95959731 - Atg16l2 protein_coding retained_intron MGP_CASTEiJ_T0085406.1 MGP_CASTEiJ_G0031609.1 mouse_genomes_project 7 95958751 95959734 - Atg16l2 protein_coding retained_intron MGP_CASTEiJ_T0085407.1 MGP_CASTEiJ_G0031609.1 mouse_genomes_project 7 95959162 95959976 - Atg16l2 protein_coding retained_intron MGP_CASTEiJ_T0085408.1 MGP_CASTEiJ_G0031609.1 mouse_genomes_project 7 95959591 95967345 - Atg16l2 protein_coding retained_intron MGP_CASTEiJ_T0085409.1 MGP_CASTEiJ_G0031609.1 mouse_genomes_project 7 95959990 95967358 - MGP_CASTEiJ_P0085409 Atg16l2 protein_coding protein_coding MGP_CASTEiJ_T0085410.1 MGP_CASTEiJ_G0031609.1 mouse_genomes_project 7 95962602 95967287 - Atg16l2 protein_coding retained_intron MGP_CASTEiJ_T0085411.1 MGP_CASTEiJ_G0031609.1 mouse_genomes_project 7 95966802 95967745 - Atg16l2 protein_coding retained_intron MGP_CASTEiJ_T0085412.1 MGP_CASTEiJ_G0031609.1 mouse_genomes_project 7 95967470 95972668 - MGP_CASTEiJ_P0085412 Atg16l2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085228.1 MGP_CASTEiJ_G0031566.1 mouse_genomes_project 7 92890223 92929660 + MGP_CASTEiJ_P0085228 Gucy2d protein_coding protein_coding MGP_CASTEiJ_T0085229.1 MGP_CASTEiJ_G0031566.1 mouse_genomes_project 7 92893230 92929659 + MGP_CASTEiJ_P0085229 Gucy2d protein_coding protein_coding MGP_CASTEiJ_T0085230.1 MGP_CASTEiJ_G0031566.1 mouse_genomes_project 7 92917996 92925511 + MGP_CASTEiJ_P0085230 Gucy2d protein_coding protein_coding MGP_CASTEiJ_T0085231.1 MGP_CASTEiJ_G0031566.1 mouse_genomes_project 7 92921865 92929659 + Gucy2d protein_coding processed_transcript MGP_CASTEiJ_T0005140.1 MGP_CASTEiJ_G0004372.1 mouse_genomes_project 7 116899034 116985035 - Gm45077 antisense antisense MGP_CASTEiJ_T0002145.1 MGP_CASTEiJ_G0002065.1 mouse_genomes_project 7 29007010 29007803 - TEC TEC MGP_CASTEiJ_T0010545.1 MGP_CASTEiJ_G0008733.1 mouse_genomes_project 7 19531447 19531535 - Mir3101 miRNA miRNA MGP_CASTEiJ_T0100036.1 MGP_CASTEiJ_G0036949.1 mouse_genomes_project 7 113692108 113692213 + Gm23229 snRNA snRNA MGP_CASTEiJ_T0081572.1 MGP_CASTEiJ_G0030624.1 mouse_genomes_project 7 1657628 1666365 + MGP_CASTEiJ_P0081572 Suv420h2 protein_coding protein_coding MGP_CASTEiJ_T0081573.1 MGP_CASTEiJ_G0030624.1 mouse_genomes_project 7 1657666 1659603 + Suv420h2 protein_coding retained_intron MGP_CASTEiJ_T0081574.1 MGP_CASTEiJ_G0030624.1 mouse_genomes_project 7 1657669 1660713 + MGP_CASTEiJ_P0081574 Suv420h2 protein_coding protein_coding MGP_CASTEiJ_T0081575.1 MGP_CASTEiJ_G0030624.1 mouse_genomes_project 7 1657680 1666365 + MGP_CASTEiJ_P0081575 Suv420h2 protein_coding protein_coding MGP_CASTEiJ_T0081576.1 MGP_CASTEiJ_G0030624.1 mouse_genomes_project 7 1657698 1666365 + MGP_CASTEiJ_P0081576 Suv420h2 protein_coding protein_coding MGP_CASTEiJ_T0081577.1 MGP_CASTEiJ_G0030624.1 mouse_genomes_project 7 1659149 1660052 + Suv420h2 protein_coding retained_intron MGP_CASTEiJ_T0081578.1 MGP_CASTEiJ_G0030624.1 mouse_genomes_project 7 1659364 1665749 + MGP_CASTEiJ_P0081578 Suv420h2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081579.1 MGP_CASTEiJ_G0030624.1 mouse_genomes_project 7 1659838 1664753 + Suv420h2 protein_coding retained_intron MGP_CASTEiJ_T0081580.1 MGP_CASTEiJ_G0030624.1 mouse_genomes_project 7 1659968 1662309 + Suv420h2 protein_coding retained_intron MGP_CASTEiJ_T0081581.1 MGP_CASTEiJ_G0030624.1 mouse_genomes_project 7 1660171 1662433 + Suv420h2 protein_coding retained_intron MGP_CASTEiJ_T0081582.1 MGP_CASTEiJ_G0030624.1 mouse_genomes_project 7 1660258 1664966 + Suv420h2 protein_coding retained_intron MGP_CASTEiJ_T0081583.1 MGP_CASTEiJ_G0030624.1 mouse_genomes_project 7 1664652 1665447 + MGP_CASTEiJ_P0081583 Suv420h2 protein_coding protein_coding MGP_CASTEiJ_T0002146.1 MGP_CASTEiJ_G0002066.1 mouse_genomes_project 7 29166805 29170060 - TEC TEC MGP_CASTEiJ_T0083587.1 MGP_CASTEiJ_G0031164.1 mouse_genomes_project 7 35645287 35662054 - MGP_CASTEiJ_P0083587 Iglon5 protein_coding protein_coding MGP_CASTEiJ_T0083588.1 MGP_CASTEiJ_G0031164.1 mouse_genomes_project 7 35646563 35650607 - MGP_CASTEiJ_P0083588 Iglon5 protein_coding protein_coding MGP_CASTEiJ_T0008692.1 MGP_CASTEiJ_G0007033.1 mouse_genomes_project 7 66809566 66847538 - Gm10619 lincRNA lincRNA MGP_CASTEiJ_T0008693.1 MGP_CASTEiJ_G0007033.1 mouse_genomes_project 7 66839328 66847610 - Gm10619 lincRNA lincRNA MGP_CASTEiJ_T0087274.1 MGP_CASTEiJ_G0032136.1 mouse_genomes_project 7 128129296 128158654 + MGP_CASTEiJ_P0087274 Gpr26 protein_coding protein_coding MGP_CASTEiJ_T0087275.1 MGP_CASTEiJ_G0032136.1 mouse_genomes_project 7 128129721 128159965 + MGP_CASTEiJ_P0087275 Gpr26 protein_coding unknown_likely_coding MGP_CASTEiJ_T0010537.1 MGP_CASTEiJ_G0008725.1 mouse_genomes_project 7 14176045 14176120 + Mir343 miRNA miRNA MGP_CASTEiJ_T0085605.1 MGP_CASTEiJ_G0031672.1 mouse_genomes_project 7 97888084 97889038 - MGP_CASTEiJ_P0085605 Olfr586 protein_coding protein_coding MGP_CASTEiJ_T0085439.1 MGP_CASTEiJ_G0031612.1 mouse_genomes_project 7 96098700 96194108 + MGP_CASTEiJ_P0085439 protein_coding protein_coding MGP_CASTEiJ_T0085440.1 MGP_CASTEiJ_G0031612.1 mouse_genomes_project 7 96098700 96194108 + MGP_CASTEiJ_P0085440 protein_coding protein_coding MGP_CASTEiJ_T0085441.1 MGP_CASTEiJ_G0031612.1 mouse_genomes_project 7 96098718 96194093 + MGP_CASTEiJ_P0085441 protein_coding protein_coding MGP_CASTEiJ_T0015187.1 MGP_CASTEiJ_G0013350.1 mouse_genomes_project 7 31164891 31165485 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015200.1 MGP_CASTEiJ_G0013363.1 mouse_genomes_project 7 34403724 34403846 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015147.1 MGP_CASTEiJ_G0013310.1 mouse_genomes_project 7 12896767 12898274 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084129.1 MGP_CASTEiJ_G0031305.1 mouse_genomes_project 7 39469689 39498508 + MGP_CASTEiJ_P0084129 Gtf2h1 protein_coding protein_coding MGP_CASTEiJ_T0084130.1 MGP_CASTEiJ_G0031305.1 mouse_genomes_project 7 39469700 39479662 + MGP_CASTEiJ_P0084130 Gtf2h1 protein_coding protein_coding MGP_CASTEiJ_T0084131.1 MGP_CASTEiJ_G0031305.1 mouse_genomes_project 7 39470257 39497981 + MGP_CASTEiJ_P0084131 Gtf2h1 protein_coding protein_coding MGP_CASTEiJ_T0084132.1 MGP_CASTEiJ_G0031305.1 mouse_genomes_project 7 39475473 39497615 + MGP_CASTEiJ_P0084132 Gtf2h1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084133.1 MGP_CASTEiJ_G0031305.1 mouse_genomes_project 7 39483461 39490505 + Gtf2h1 protein_coding retained_intron MGP_CASTEiJ_T0002144.1 MGP_CASTEiJ_G0002064.1 mouse_genomes_project 7 28954089 28956395 - TEC TEC MGP_CASTEiJ_T0086514.1 MGP_CASTEiJ_G0031997.1 mouse_genomes_project 7 121430764 121607983 + MGP_CASTEiJ_P0086514 D430042O09Rik protein_coding protein_coding MGP_CASTEiJ_T0086515.1 MGP_CASTEiJ_G0031997.1 mouse_genomes_project 7 121430791 121608221 + MGP_CASTEiJ_P0086515 D430042O09Rik protein_coding protein_coding MGP_CASTEiJ_T0086516.1 MGP_CASTEiJ_G0031997.1 mouse_genomes_project 7 121430793 121442104 + D430042O09Rik protein_coding retained_intron MGP_CASTEiJ_T0086517.1 MGP_CASTEiJ_G0031997.1 mouse_genomes_project 7 121430831 121645551 + MGP_CASTEiJ_P0086517 D430042O09Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0086518.1 MGP_CASTEiJ_G0031997.1 mouse_genomes_project 7 121430867 121488250 + MGP_CASTEiJ_P0086518 D430042O09Rik protein_coding protein_coding MGP_CASTEiJ_T0086519.1 MGP_CASTEiJ_G0031997.1 mouse_genomes_project 7 121514330 121595281 + D430042O09Rik protein_coding processed_transcript MGP_CASTEiJ_T0086520.1 MGP_CASTEiJ_G0031997.1 mouse_genomes_project 7 121562913 121608221 + D430042O09Rik protein_coding retained_intron MGP_CASTEiJ_T0086521.1 MGP_CASTEiJ_G0031997.1 mouse_genomes_project 7 121593958 121605700 + MGP_CASTEiJ_P0086521 D430042O09Rik protein_coding protein_coding MGP_CASTEiJ_T0086522.1 MGP_CASTEiJ_G0031997.1 mouse_genomes_project 7 121598559 121601279 + D430042O09Rik protein_coding retained_intron MGP_CASTEiJ_T0102588.1 MGP_CASTEiJ_G0039312.1 mouse_genomes_project 7 98675568 98676664 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015248.1 MGP_CASTEiJ_G0013411.1 mouse_genomes_project 7 73755321 73756854 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082971.1 MGP_CASTEiJ_G0031035.1 mouse_genomes_project 7 22657097 22695851 - MGP_CASTEiJ_P0082971 Gm26920 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084603.1 MGP_CASTEiJ_G0031411.1 mouse_genomes_project 7 71972504 71982420 + MGP_CASTEiJ_P0084603 Mrps11 protein_coding protein_coding MGP_CASTEiJ_T0084604.1 MGP_CASTEiJ_G0031411.1 mouse_genomes_project 7 71972699 71980674 + Mrps11 protein_coding retained_intron MGP_CASTEiJ_T0084605.1 MGP_CASTEiJ_G0031411.1 mouse_genomes_project 7 71972754 71978851 + Mrps11 protein_coding retained_intron MGP_CASTEiJ_T0084606.1 MGP_CASTEiJ_G0031411.1 mouse_genomes_project 7 71972755 71982420 + MGP_CASTEiJ_P0084606 Mrps11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084607.1 MGP_CASTEiJ_G0031411.1 mouse_genomes_project 7 71972769 71980361 + Mrps11 protein_coding retained_intron MGP_CASTEiJ_T0084608.1 MGP_CASTEiJ_G0031411.1 mouse_genomes_project 7 71972770 71978743 + Mrps11 protein_coding retained_intron MGP_CASTEiJ_T0002150.1 MGP_CASTEiJ_G0002070.1 mouse_genomes_project 7 32454886 32456983 - TEC TEC MGP_CASTEiJ_T0002179.1 MGP_CASTEiJ_G0002099.1 mouse_genomes_project 7 66415362 66416999 + TEC TEC MGP_CASTEiJ_T0010622.1 MGP_CASTEiJ_G0008810.1 mouse_genomes_project 7 136849397 136849469 - Mir202 miRNA miRNA MGP_CASTEiJ_T0086325.1 MGP_CASTEiJ_G0031954.1 mouse_genomes_project 7 115832522 115869128 + Abca15 protein_coding retained_intron MGP_CASTEiJ_T0086326.1 MGP_CASTEiJ_G0031954.1 mouse_genomes_project 7 115832522 115915069 + MGP_CASTEiJ_P0086326 Abca15 protein_coding protein_coding MGP_CASTEiJ_T0086327.1 MGP_CASTEiJ_G0031954.1 mouse_genomes_project 7 115832522 115915069 + MGP_CASTEiJ_P0086327 Abca15 protein_coding protein_coding MGP_CASTEiJ_T0081658.1 MGP_CASTEiJ_G0030656.1 mouse_genomes_project 7 2747851 2749298 - MGP_CASTEiJ_P0081658 Vmn1r56 protein_coding protein_coding MGP_CASTEiJ_T0101254.1 MGP_CASTEiJ_G0038167.1 mouse_genomes_project 7 76507555 76507687 + Gm22934 snoRNA snoRNA MGP_CASTEiJ_T0008732.1 MGP_CASTEiJ_G0007054.1 mouse_genomes_project 7 84244180 84249457 - 2310010J17Rik lincRNA lincRNA MGP_CASTEiJ_T0081945.1 MGP_CASTEiJ_G0030767.1 mouse_genomes_project 7 11498073 11508900 + MGP_CASTEiJ_P0081945 Ap2s1 protein_coding protein_coding MGP_CASTEiJ_T0081946.1 MGP_CASTEiJ_G0030767.1 mouse_genomes_project 7 11498107 11508620 + MGP_CASTEiJ_P0081946 Ap2s1 protein_coding protein_coding MGP_CASTEiJ_T0081947.1 MGP_CASTEiJ_G0030767.1 mouse_genomes_project 7 11498135 11508540 + MGP_CASTEiJ_P0081947 Ap2s1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081948.1 MGP_CASTEiJ_G0030767.1 mouse_genomes_project 7 11498201 11508344 + Ap2s1 protein_coding processed_transcript MGP_CASTEiJ_T0081949.1 MGP_CASTEiJ_G0030767.1 mouse_genomes_project 7 11506336 11508900 + Ap2s1 protein_coding retained_intron MGP_CASTEiJ_T0082604.1 MGP_CASTEiJ_G0030944.1 mouse_genomes_project 7 19569268 19594028 - MGP_CASTEiJ_P0082604 Itpkc protein_coding protein_coding MGP_CASTEiJ_T0082605.1 MGP_CASTEiJ_G0030944.1 mouse_genomes_project 7 19570065 19575159 - Itpkc protein_coding processed_transcript MGP_CASTEiJ_T0082606.1 MGP_CASTEiJ_G0030944.1 mouse_genomes_project 7 19574671 19576567 - Itpkc protein_coding retained_intron MGP_CASTEiJ_T0082607.1 MGP_CASTEiJ_G0030944.1 mouse_genomes_project 7 19591137 19594061 - Itpkc protein_coding retained_intron MGP_CASTEiJ_T0015204.1 MGP_CASTEiJ_G0013367.1 mouse_genomes_project 7 35502402 35502639 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084046.1 MGP_CASTEiJ_G0031286.1 mouse_genomes_project 7 38473171 38474651 + Kdelr1 protein_coding processed_transcript MGP_CASTEiJ_T0084047.1 MGP_CASTEiJ_G0031286.1 mouse_genomes_project 7 38473295 38486112 + MGP_CASTEiJ_P0084047 Kdelr1 protein_coding protein_coding MGP_CASTEiJ_T0084048.1 MGP_CASTEiJ_G0031286.1 mouse_genomes_project 7 38481703 38485148 + Kdelr1 protein_coding processed_transcript MGP_CASTEiJ_T0085858.1 MGP_CASTEiJ_G0031817.1 mouse_genomes_project 7 102038182 102039312 - MGP_CASTEiJ_P0085858 protein_coding protein_coding MGP_CASTEiJ_T0017591.1 MGP_CASTEiJ_G0014978.1 mouse_genomes_project 7 23297152 23322489 - Gm21982 processed_transcript retained_intron MGP_CASTEiJ_T0002176.1 MGP_CASTEiJ_G0002096.1 mouse_genomes_project 7 57892963 57893384 - TEC TEC MGP_CASTEiJ_T0008655.1 MGP_CASTEiJ_G0007004.1 mouse_genomes_project 7 58114755 58168134 - lincRNA lincRNA MGP_CASTEiJ_T0011365.1 MGP_CASTEiJ_G0009553.1 mouse_genomes_project 7 123003886 123004094 + Gm25735 misc_RNA misc_RNA MGP_CASTEiJ_T0017578.1 MGP_CASTEiJ_G0014970.1 mouse_genomes_project 7 2004318 2010712 - processed_transcript processed_transcript MGP_CASTEiJ_T0017579.1 MGP_CASTEiJ_G0014970.1 mouse_genomes_project 7 2004319 2010627 - processed_transcript processed_transcript MGP_CASTEiJ_T0008730.1 MGP_CASTEiJ_G0007052.1 mouse_genomes_project 7 78118235 78161100 + lincRNA lincRNA MGP_CASTEiJ_T0008581.1 MGP_CASTEiJ_G0006944.1 mouse_genomes_project 7 14073334 14075415 - Gm26802 lincRNA lincRNA MGP_CASTEiJ_T0102534.1 MGP_CASTEiJ_G0039258.1 mouse_genomes_project 7 40250549 40792667 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0082989.1 MGP_CASTEiJ_G0031039.1 mouse_genomes_project 7 22777448 22787233 - MGP_CASTEiJ_P0082989 Zfp146 protein_coding protein_coding MGP_CASTEiJ_T0082990.1 MGP_CASTEiJ_G0031039.1 mouse_genomes_project 7 22778900 22779546 - Zfp146 protein_coding processed_transcript MGP_CASTEiJ_T0008797.1 MGP_CASTEiJ_G0007095.1 mouse_genomes_project 7 122867681 122870939 + Gm44939 lincRNA lincRNA MGP_CASTEiJ_T0099013.1 MGP_CASTEiJ_G0035932.1 mouse_genomes_project 7 125647747 125672929 + Gm33248 sense_intronic sense_intronic MGP_CASTEiJ_T0087099.1 MGP_CASTEiJ_G0032105.1 mouse_genomes_project 7 124141582 124151680 + MGP_CASTEiJ_P0087099 protein_coding protein_coding MGP_CASTEiJ_T0087100.1 MGP_CASTEiJ_G0032105.1 mouse_genomes_project 7 124141734 124149391 + MGP_CASTEiJ_P0087100 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087101.1 MGP_CASTEiJ_G0032105.1 mouse_genomes_project 7 124141769 124149699 + MGP_CASTEiJ_P0087101 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087102.1 MGP_CASTEiJ_G0032105.1 mouse_genomes_project 7 124141769 124149352 + MGP_CASTEiJ_P0087102 protein_coding protein_coding MGP_CASTEiJ_T0087103.1 MGP_CASTEiJ_G0032105.1 mouse_genomes_project 7 124142796 124149699 + protein_coding retained_intron MGP_CASTEiJ_T0087104.1 MGP_CASTEiJ_G0032105.1 mouse_genomes_project 7 124142796 124149699 + protein_coding retained_intron MGP_CASTEiJ_T0087105.1 MGP_CASTEiJ_G0032105.1 mouse_genomes_project 7 124142796 124149699 + protein_coding retained_intron MGP_CASTEiJ_T0087106.1 MGP_CASTEiJ_G0032105.1 mouse_genomes_project 7 124142796 124149699 + protein_coding retained_intron MGP_CASTEiJ_T0087107.1 MGP_CASTEiJ_G0032105.1 mouse_genomes_project 7 124142796 124149699 + protein_coding retained_intron MGP_CASTEiJ_T0087108.1 MGP_CASTEiJ_G0032105.1 mouse_genomes_project 7 124142954 124149353 + MGP_CASTEiJ_P0087108 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0008585.1 MGP_CASTEiJ_G0006948.1 mouse_genomes_project 7 16886806 16888616 + Gm4598 lincRNA lincRNA MGP_CASTEiJ_T0087212.1 MGP_CASTEiJ_G0032119.1 mouse_genomes_project 7 126546982 126561837 - MGP_CASTEiJ_P0087212 Nsmce4a protein_coding protein_coding MGP_CASTEiJ_T0087213.1 MGP_CASTEiJ_G0032119.1 mouse_genomes_project 7 126546992 126550409 - Nsmce4a protein_coding retained_intron MGP_CASTEiJ_T0087214.1 MGP_CASTEiJ_G0032119.1 mouse_genomes_project 7 126548229 126586338 - MGP_CASTEiJ_P0087214 Nsmce4a protein_coding protein_coding MGP_CASTEiJ_T0087215.1 MGP_CASTEiJ_G0032119.1 mouse_genomes_project 7 126549998 126553958 - Nsmce4a protein_coding retained_intron MGP_CASTEiJ_T0087216.1 MGP_CASTEiJ_G0032119.1 mouse_genomes_project 7 126551420 126560380 - MGP_CASTEiJ_P0087216 Nsmce4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087217.1 MGP_CASTEiJ_G0032119.1 mouse_genomes_project 7 126554162 126557234 - Nsmce4a protein_coding retained_intron MGP_CASTEiJ_T0102512.1 MGP_CASTEiJ_G0039236.1 mouse_genomes_project 7 32614692 32620716 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102471.1 MGP_CASTEiJ_G0039196.1 mouse_genomes_project 7 9343177 9346432 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0082550.1 MGP_CASTEiJ_G0030927.1 mouse_genomes_project 7 18445332 18474673 + MGP_CASTEiJ_P0082550 protein_coding protein_coding MGP_CASTEiJ_T0082423.1 MGP_CASTEiJ_G0030899.1 mouse_genomes_project 7 17361294 17403942 - MGP_CASTEiJ_P0082423 Pou2f2 protein_coding protein_coding MGP_CASTEiJ_T0082424.1 MGP_CASTEiJ_G0030899.1 mouse_genomes_project 7 17361294 17403942 - MGP_CASTEiJ_P0082424 Pou2f2 protein_coding protein_coding MGP_CASTEiJ_T0082425.1 MGP_CASTEiJ_G0030899.1 mouse_genomes_project 7 17367765 17403942 - MGP_CASTEiJ_P0082425 Pou2f2 protein_coding protein_coding MGP_CASTEiJ_T0082426.1 MGP_CASTEiJ_G0030899.1 mouse_genomes_project 7 17367805 17403931 - MGP_CASTEiJ_P0082426 Pou2f2 protein_coding protein_coding MGP_CASTEiJ_T0082427.1 MGP_CASTEiJ_G0030899.1 mouse_genomes_project 7 17367805 17403942 - MGP_CASTEiJ_P0082427 Pou2f2 protein_coding protein_coding MGP_CASTEiJ_T0082428.1 MGP_CASTEiJ_G0030899.1 mouse_genomes_project 7 17367805 17403942 - MGP_CASTEiJ_P0082428 Pou2f2 protein_coding protein_coding MGP_CASTEiJ_T0082429.1 MGP_CASTEiJ_G0030899.1 mouse_genomes_project 7 17367941 17403942 - MGP_CASTEiJ_P0082429 Pou2f2 protein_coding protein_coding MGP_CASTEiJ_T0082430.1 MGP_CASTEiJ_G0030899.1 mouse_genomes_project 7 17368533 17403966 - MGP_CASTEiJ_P0082430 Pou2f2 protein_coding protein_coding MGP_CASTEiJ_T0082431.1 MGP_CASTEiJ_G0030899.1 mouse_genomes_project 7 17375076 17396213 - MGP_CASTEiJ_P0082431 Pou2f2 protein_coding protein_coding MGP_CASTEiJ_T0082432.1 MGP_CASTEiJ_G0030899.1 mouse_genomes_project 7 17395972 17434688 - Pou2f2 protein_coding retained_intron MGP_CASTEiJ_T0086381.1 MGP_CASTEiJ_G0031970.1 mouse_genomes_project 7 117328937 117366135 + MGP_CASTEiJ_P0086381 Scnn1g protein_coding protein_coding MGP_CASTEiJ_T0015239.1 MGP_CASTEiJ_G0013402.1 mouse_genomes_project 7 67792978 67793209 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008731.1 MGP_CASTEiJ_G0007053.1 mouse_genomes_project 7 82388302 82394611 - Gm26522 lincRNA lincRNA MGP_CASTEiJ_T0010598.1 MGP_CASTEiJ_G0008786.1 mouse_genomes_project 7 90629140 90629249 + Mir708 miRNA miRNA MGP_CASTEiJ_T0002168.1 MGP_CASTEiJ_G0002088.1 mouse_genomes_project 7 56284893 56285252 + TEC TEC MGP_CASTEiJ_T0085838.1 MGP_CASTEiJ_G0031798.1 mouse_genomes_project 7 101679080 101680016 - MGP_CASTEiJ_P0085838 Olfr698 protein_coding protein_coding MGP_CASTEiJ_T0015152.1 MGP_CASTEiJ_G0013315.1 mouse_genomes_project 7 16318731 16328107 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083173.1 MGP_CASTEiJ_G0031081.1 mouse_genomes_project 7 23419773 23439540 + MGP_CASTEiJ_P0083173 Dmkn protein_coding protein_coding MGP_CASTEiJ_T0083174.1 MGP_CASTEiJ_G0031081.1 mouse_genomes_project 7 23419780 23439539 + MGP_CASTEiJ_P0083174 Dmkn protein_coding protein_coding MGP_CASTEiJ_T0083175.1 MGP_CASTEiJ_G0031081.1 mouse_genomes_project 7 23419780 23439539 + MGP_CASTEiJ_P0083175 Dmkn protein_coding protein_coding MGP_CASTEiJ_T0083176.1 MGP_CASTEiJ_G0031081.1 mouse_genomes_project 7 23419818 23439539 + MGP_CASTEiJ_P0083176 Dmkn protein_coding protein_coding MGP_CASTEiJ_T0083177.1 MGP_CASTEiJ_G0031081.1 mouse_genomes_project 7 23421078 23439285 + MGP_CASTEiJ_P0083177 Dmkn protein_coding protein_coding MGP_CASTEiJ_T0083178.1 MGP_CASTEiJ_G0031081.1 mouse_genomes_project 7 23432131 23439544 + MGP_CASTEiJ_P0083178 Dmkn protein_coding protein_coding MGP_CASTEiJ_T0083864.1 MGP_CASTEiJ_G0031243.1 mouse_genomes_project 7 37675707 37697026 - MGP_CASTEiJ_P0083864 Ccdc155 protein_coding protein_coding MGP_CASTEiJ_T0083865.1 MGP_CASTEiJ_G0031243.1 mouse_genomes_project 7 37675833 37697011 - MGP_CASTEiJ_P0083865 Ccdc155 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083866.1 MGP_CASTEiJ_G0031243.1 mouse_genomes_project 7 37676011 37682148 - Ccdc155 protein_coding retained_intron MGP_CASTEiJ_T0084905.1 MGP_CASTEiJ_G0031468.1 mouse_genomes_project 7 75256762 75294309 - MGP_CASTEiJ_P0084905 Btbd1 protein_coding protein_coding MGP_CASTEiJ_T0086102.1 MGP_CASTEiJ_G0031907.1 mouse_genomes_project 7 109494268 109505793 - MGP_CASTEiJ_P0086102 Psma1 protein_coding protein_coding MGP_CASTEiJ_T0086103.1 MGP_CASTEiJ_G0031907.1 mouse_genomes_project 7 109494457 109505701 - Psma1 protein_coding processed_transcript MGP_CASTEiJ_T0086104.1 MGP_CASTEiJ_G0031907.1 mouse_genomes_project 7 109500145 109505729 - Psma1 protein_coding retained_intron MGP_CASTEiJ_T0086105.1 MGP_CASTEiJ_G0031907.1 mouse_genomes_project 7 109503457 109505718 - Psma1 protein_coding retained_intron MGP_CASTEiJ_T0087985.1 MGP_CASTEiJ_G0032301.1 mouse_genomes_project 7 140912676 140915961 - MGP_CASTEiJ_P0087985 Mrgprg protein_coding protein_coding MGP_CASTEiJ_T0085392.1 MGP_CASTEiJ_G0031608.1 mouse_genomes_project 7 95773010 95951964 + MGP_CASTEiJ_P0085392 Fchsd2 protein_coding protein_coding MGP_CASTEiJ_T0085393.1 MGP_CASTEiJ_G0031608.1 mouse_genomes_project 7 95773011 95868990 + Fchsd2 protein_coding processed_transcript MGP_CASTEiJ_T0085394.1 MGP_CASTEiJ_G0031608.1 mouse_genomes_project 7 95773016 95951987 + MGP_CASTEiJ_P0085394 Fchsd2 protein_coding protein_coding MGP_CASTEiJ_T0085395.1 MGP_CASTEiJ_G0031608.1 mouse_genomes_project 7 95773040 95866034 + Fchsd2 protein_coding retained_intron MGP_CASTEiJ_T0085396.1 MGP_CASTEiJ_G0031608.1 mouse_genomes_project 7 95773115 95856823 + Fchsd2 protein_coding processed_transcript MGP_CASTEiJ_T0085397.1 MGP_CASTEiJ_G0031608.1 mouse_genomes_project 7 95773117 95805617 + Fchsd2 protein_coding retained_intron MGP_CASTEiJ_T0085398.1 MGP_CASTEiJ_G0031608.1 mouse_genomes_project 7 95908144 95918608 + Fchsd2 protein_coding retained_intron MGP_CASTEiJ_T0085108.1 MGP_CASTEiJ_G0031542.1 mouse_genomes_project 7 87112477 87131982 - MGP_CASTEiJ_P0085108 Ddias protein_coding protein_coding MGP_CASTEiJ_T0083310.1 MGP_CASTEiJ_G0031101.1 mouse_genomes_project 7 24004271 24016228 + MGP_CASTEiJ_P0083310 protein_coding protein_coding MGP_CASTEiJ_T0087650.1 MGP_CASTEiJ_G0032245.1 mouse_genomes_project 7 138205832 138241056 + MGP_CASTEiJ_P0087650 Phrf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087651.1 MGP_CASTEiJ_G0032245.1 mouse_genomes_project 7 138205837 138240940 + MGP_CASTEiJ_P0087651 Phrf1 protein_coding protein_coding MGP_CASTEiJ_T0087652.1 MGP_CASTEiJ_G0032245.1 mouse_genomes_project 7 138211250 138223386 + MGP_CASTEiJ_P0087652 Phrf1 protein_coding protein_coding MGP_CASTEiJ_T0087653.1 MGP_CASTEiJ_G0032245.1 mouse_genomes_project 7 138219184 138240909 + MGP_CASTEiJ_P0087653 Phrf1 protein_coding protein_coding MGP_CASTEiJ_T0087654.1 MGP_CASTEiJ_G0032245.1 mouse_genomes_project 7 138230609 138236392 + Phrf1 protein_coding processed_transcript MGP_CASTEiJ_T0087655.1 MGP_CASTEiJ_G0032245.1 mouse_genomes_project 7 138234325 138236152 + Phrf1 protein_coding retained_intron MGP_CASTEiJ_T0087656.1 MGP_CASTEiJ_G0032245.1 mouse_genomes_project 7 138234326 138235209 + Phrf1 protein_coding retained_intron MGP_CASTEiJ_T0087657.1 MGP_CASTEiJ_G0032245.1 mouse_genomes_project 7 138237512 138241064 + MGP_CASTEiJ_P0087657 Phrf1 protein_coding protein_coding MGP_CASTEiJ_T0087658.1 MGP_CASTEiJ_G0032245.1 mouse_genomes_project 7 138237971 138238901 + Phrf1 protein_coding processed_transcript MGP_CASTEiJ_T0087659.1 MGP_CASTEiJ_G0032245.1 mouse_genomes_project 7 138238710 138241061 + MGP_CASTEiJ_P0087659 Phrf1 protein_coding protein_coding MGP_CASTEiJ_T0087660.1 MGP_CASTEiJ_G0032245.1 mouse_genomes_project 7 138239992 138241014 + Phrf1 protein_coding processed_transcript MGP_CASTEiJ_T0086931.1 MGP_CASTEiJ_G0032070.1 mouse_genomes_project 7 123416006 123419887 + MGP_CASTEiJ_P0086931 Tmem265 protein_coding protein_coding MGP_CASTEiJ_T0086932.1 MGP_CASTEiJ_G0032070.1 mouse_genomes_project 7 123416195 123421554 + MGP_CASTEiJ_P0086932 Tmem265 protein_coding protein_coding MGP_CASTEiJ_T0084710.1 MGP_CASTEiJ_G0031433.1 mouse_genomes_project 7 73304995 73379987 + MGP_CASTEiJ_P0084710 Zfp710 protein_coding protein_coding MGP_CASTEiJ_T0084711.1 MGP_CASTEiJ_G0031433.1 mouse_genomes_project 7 73306552 73375002 + MGP_CASTEiJ_P0084711 Zfp710 protein_coding protein_coding MGP_CASTEiJ_T0084712.1 MGP_CASTEiJ_G0031433.1 mouse_genomes_project 7 73310242 73367937 + MGP_CASTEiJ_P0084712 Zfp710 protein_coding protein_coding MGP_CASTEiJ_T0084713.1 MGP_CASTEiJ_G0031433.1 mouse_genomes_project 7 73367750 73380911 + MGP_CASTEiJ_P0084713 Zfp710 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085101.1 MGP_CASTEiJ_G0031540.1 mouse_genomes_project 7 86890095 86923233 - MGP_CASTEiJ_P0085101 Pcf11 protein_coding protein_coding MGP_CASTEiJ_T0085102.1 MGP_CASTEiJ_G0031540.1 mouse_genomes_project 7 86890643 86916844 - MGP_CASTEiJ_P0085102 Pcf11 protein_coding protein_coding MGP_CASTEiJ_T0085103.1 MGP_CASTEiJ_G0031540.1 mouse_genomes_project 7 86893201 86894593 - Pcf11 protein_coding retained_intron MGP_CASTEiJ_T0085104.1 MGP_CASTEiJ_G0031540.1 mouse_genomes_project 7 86910951 86922955 - MGP_CASTEiJ_P0085104 Pcf11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0087773.1 MGP_CASTEiJ_G0032263.1 mouse_genomes_project 7 138473694 138491174 + MGP_CASTEiJ_P0087773 Tspan4 protein_coding protein_coding MGP_CASTEiJ_T0087774.1 MGP_CASTEiJ_G0032263.1 mouse_genomes_project 7 138473697 138491187 + MGP_CASTEiJ_P0087774 Tspan4 protein_coding protein_coding MGP_CASTEiJ_T0087775.1 MGP_CASTEiJ_G0032263.1 mouse_genomes_project 7 138473920 138488991 + MGP_CASTEiJ_P0087775 Tspan4 protein_coding protein_coding MGP_CASTEiJ_T0087776.1 MGP_CASTEiJ_G0032263.1 mouse_genomes_project 7 138481521 138524088 + MGP_CASTEiJ_P0087776 Tspan4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0087777.1 MGP_CASTEiJ_G0032263.1 mouse_genomes_project 7 138481582 138492766 + MGP_CASTEiJ_P0087777 Tspan4 protein_coding protein_coding MGP_CASTEiJ_T0087778.1 MGP_CASTEiJ_G0032263.1 mouse_genomes_project 7 138490859 138492331 + Tspan4 protein_coding retained_intron MGP_CASTEiJ_T0088040.1 MGP_CASTEiJ_G0032313.1 mouse_genomes_project 7 142096185 142100665 + MGP_CASTEiJ_P0088040 Fgf15 protein_coding protein_coding MGP_CASTEiJ_T0082295.1 MGP_CASTEiJ_G0030869.1 mouse_genomes_project 7 16465222 16482680 - MGP_CASTEiJ_P0082295 Zfp94 protein_coding protein_coding MGP_CASTEiJ_T0082296.1 MGP_CASTEiJ_G0030869.1 mouse_genomes_project 7 16465314 16482741 - MGP_CASTEiJ_P0082296 Zfp94 protein_coding protein_coding MGP_CASTEiJ_T0082297.1 MGP_CASTEiJ_G0030869.1 mouse_genomes_project 7 16467145 16474051 - Zfp94 protein_coding retained_intron MGP_CASTEiJ_T0082298.1 MGP_CASTEiJ_G0030869.1 mouse_genomes_project 7 16473230 16482699 - Zfp94 protein_coding processed_transcript MGP_CASTEiJ_T0082299.1 MGP_CASTEiJ_G0030869.1 mouse_genomes_project 7 16473523 16482683 - Zfp94 protein_coding retained_intron MGP_CASTEiJ_T0082300.1 MGP_CASTEiJ_G0030869.1 mouse_genomes_project 7 16473638 16482657 - Zfp94 protein_coding processed_transcript MGP_CASTEiJ_T0083526.1 MGP_CASTEiJ_G0031146.1 mouse_genomes_project 7 33129300 33319413 - MGP_CASTEiJ_P0083526 AW146154 protein_coding protein_coding MGP_CASTEiJ_T0083528.1 MGP_CASTEiJ_G0031146.1 mouse_genomes_project 7 33298062 33299195 - AW146154 protein_coding retained_intron MGP_CASTEiJ_T0084872.1 MGP_CASTEiJ_G0031459.1 mouse_genomes_project 7 74780610 74782410 - Rps17 protein_coding processed_transcript MGP_CASTEiJ_T0084873.1 MGP_CASTEiJ_G0031459.1 mouse_genomes_project 7 74780611 74783133 - MGP_CASTEiJ_P0084873 Rps17 protein_coding protein_coding MGP_CASTEiJ_T0084874.1 MGP_CASTEiJ_G0031459.1 mouse_genomes_project 7 74780618 74783113 - Rps17 protein_coding retained_intron MGP_CASTEiJ_T0084875.1 MGP_CASTEiJ_G0031459.1 mouse_genomes_project 7 74781297 74783111 - Rps17 protein_coding retained_intron MGP_CASTEiJ_T0084876.1 MGP_CASTEiJ_G0031459.1 mouse_genomes_project 7 74782582 74783103 - Rps17 protein_coding processed_transcript MGP_CASTEiJ_T0081386.1 MGP_CASTEiJ_G0030595.1 mouse_genomes_project 7 504320 513903 - MGP_CASTEiJ_P0081386 Tfpt protein_coding protein_coding MGP_CASTEiJ_T0081387.1 MGP_CASTEiJ_G0030595.1 mouse_genomes_project 7 504320 513948 - MGP_CASTEiJ_P0081387 Tfpt protein_coding protein_coding MGP_CASTEiJ_T0081388.1 MGP_CASTEiJ_G0030595.1 mouse_genomes_project 7 504331 513105 - MGP_CASTEiJ_P0081388 Tfpt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081389.1 MGP_CASTEiJ_G0030595.1 mouse_genomes_project 7 504803 513598 - Tfpt protein_coding processed_transcript MGP_CASTEiJ_T0081390.1 MGP_CASTEiJ_G0030595.1 mouse_genomes_project 7 504819 513846 - MGP_CASTEiJ_P0081390 Tfpt protein_coding protein_coding MGP_CASTEiJ_T0081391.1 MGP_CASTEiJ_G0030595.1 mouse_genomes_project 7 504998 513878 - MGP_CASTEiJ_P0081391 Tfpt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081392.1 MGP_CASTEiJ_G0030595.1 mouse_genomes_project 7 508626 513598 - MGP_CASTEiJ_P0081392 Tfpt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082362.1 MGP_CASTEiJ_G0030888.1 mouse_genomes_project 7 17031152 17039183 + MGP_CASTEiJ_P0082362 Ceacam10 protein_coding protein_coding MGP_CASTEiJ_T0082363.1 MGP_CASTEiJ_G0030888.1 mouse_genomes_project 7 17031156 17039179 + MGP_CASTEiJ_P0082363 Ceacam10 protein_coding protein_coding MGP_CASTEiJ_T0082364.1 MGP_CASTEiJ_G0030888.1 mouse_genomes_project 7 17031209 17039184 + MGP_CASTEiJ_P0082364 Ceacam10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082365.1 MGP_CASTEiJ_G0030888.1 mouse_genomes_project 7 17037423 17039183 + Ceacam10 protein_coding retained_intron MGP_CASTEiJ_T0002203.1 MGP_CASTEiJ_G0002122.1 mouse_genomes_project 7 72756697 72757731 + TEC TEC MGP_CASTEiJ_T0084799.1 MGP_CASTEiJ_G0031447.1 mouse_genomes_project 7 73713404 73720950 - Furin protein_coding retained_intron MGP_CASTEiJ_T0084800.1 MGP_CASTEiJ_G0031447.1 mouse_genomes_project 7 73714016 73730071 - MGP_CASTEiJ_P0084800 Furin protein_coding protein_coding MGP_CASTEiJ_T0084801.1 MGP_CASTEiJ_G0031447.1 mouse_genomes_project 7 73714016 73727370 - MGP_CASTEiJ_P0084801 Furin protein_coding protein_coding MGP_CASTEiJ_T0084802.1 MGP_CASTEiJ_G0031447.1 mouse_genomes_project 7 73714019 73726315 - MGP_CASTEiJ_P0084802 Furin protein_coding protein_coding MGP_CASTEiJ_T0084803.1 MGP_CASTEiJ_G0031447.1 mouse_genomes_project 7 73720594 73727185 - MGP_CASTEiJ_P0084803 Furin protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084804.1 MGP_CASTEiJ_G0031447.1 mouse_genomes_project 7 73720904 73724062 - Furin protein_coding retained_intron MGP_CASTEiJ_T0084805.1 MGP_CASTEiJ_G0031447.1 mouse_genomes_project 7 73723186 73730076 - MGP_CASTEiJ_P0084805 Furin protein_coding protein_coding MGP_CASTEiJ_T0084806.1 MGP_CASTEiJ_G0031447.1 mouse_genomes_project 7 73723233 73727930 - MGP_CASTEiJ_P0084806 Furin protein_coding protein_coding MGP_CASTEiJ_T0082442.1 MGP_CASTEiJ_G0030904.1 mouse_genomes_project 7 17553271 17582997 + MGP_CASTEiJ_P0082442 Cic protein_coding protein_coding MGP_CASTEiJ_T0082443.1 MGP_CASTEiJ_G0030904.1 mouse_genomes_project 7 17553954 17557792 + MGP_CASTEiJ_P0082443 Cic protein_coding protein_coding MGP_CASTEiJ_T0082444.1 MGP_CASTEiJ_G0030904.1 mouse_genomes_project 7 17564945 17573818 + Cic protein_coding processed_transcript MGP_CASTEiJ_T0082445.1 MGP_CASTEiJ_G0030904.1 mouse_genomes_project 7 17566204 17573781 + Cic protein_coding processed_transcript MGP_CASTEiJ_T0082446.1 MGP_CASTEiJ_G0030904.1 mouse_genomes_project 7 17571066 17582983 + MGP_CASTEiJ_P0082446 Cic protein_coding protein_coding MGP_CASTEiJ_T0082447.1 MGP_CASTEiJ_G0030904.1 mouse_genomes_project 7 17571066 17582986 + MGP_CASTEiJ_P0082447 Cic protein_coding protein_coding MGP_CASTEiJ_T0082448.1 MGP_CASTEiJ_G0030904.1 mouse_genomes_project 7 17571659 17580191 + MGP_CASTEiJ_P0082448 Cic protein_coding protein_coding MGP_CASTEiJ_T0082449.1 MGP_CASTEiJ_G0030904.1 mouse_genomes_project 7 17572066 17574044 + Cic protein_coding processed_transcript MGP_CASTEiJ_T0082450.1 MGP_CASTEiJ_G0030904.1 mouse_genomes_project 7 17573518 17574533 + Cic protein_coding retained_intron MGP_CASTEiJ_T0082451.1 MGP_CASTEiJ_G0030904.1 mouse_genomes_project 7 17574671 17582980 + Cic protein_coding retained_intron MGP_CASTEiJ_T0082452.1 MGP_CASTEiJ_G0030904.1 mouse_genomes_project 7 17578111 17578555 + Cic protein_coding retained_intron MGP_CASTEiJ_T0082453.1 MGP_CASTEiJ_G0030904.1 mouse_genomes_project 7 17580019 17582983 + MGP_CASTEiJ_P0082453 Cic protein_coding protein_coding MGP_CASTEiJ_T0082454.1 MGP_CASTEiJ_G0030904.1 mouse_genomes_project 7 17580056 17580925 + Cic protein_coding retained_intron MGP_CASTEiJ_T0082455.1 MGP_CASTEiJ_G0030904.1 mouse_genomes_project 7 17580783 17581308 + Cic protein_coding retained_intron MGP_CASTEiJ_T0082456.1 MGP_CASTEiJ_G0030904.1 mouse_genomes_project 7 17581866 17582983 + MGP_CASTEiJ_P0082456 Cic protein_coding protein_coding MGP_CASTEiJ_T0102590.1 MGP_CASTEiJ_G0039314.1 mouse_genomes_project 7 98814033 98814986 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008735.1 MGP_CASTEiJ_G0007057.1 mouse_genomes_project 7 87267866 87378296 + Gm26862 lincRNA lincRNA MGP_CASTEiJ_T0083521.1 MGP_CASTEiJ_G0031144.1 mouse_genomes_project 7 32537939 32572398 + MGP_CASTEiJ_P0083521 Vstm2b protein_coding protein_coding MGP_CASTEiJ_T0083522.1 MGP_CASTEiJ_G0031144.1 mouse_genomes_project 7 32540100 32571771 + MGP_CASTEiJ_P0083522 Vstm2b protein_coding protein_coding MGP_CASTEiJ_T0083523.1 MGP_CASTEiJ_G0031144.1 mouse_genomes_project 7 32540154 32543609 + MGP_CASTEiJ_P0083523 Vstm2b protein_coding protein_coding MGP_CASTEiJ_T0083524.1 MGP_CASTEiJ_G0031144.1 mouse_genomes_project 7 32540970 32543622 + MGP_CASTEiJ_P0083524 Vstm2b protein_coding protein_coding MGP_CASTEiJ_T0011505.1 MGP_CASTEiJ_G0009668.1 mouse_genomes_project 7 96238370 96271921 - MGP_CASTEiJ_P0011505 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0101266.1 MGP_CASTEiJ_G0038179.1 mouse_genomes_project 7 104486430 104486560 + Gm24888 snoRNA snoRNA MGP_CASTEiJ_T0005048.1 MGP_CASTEiJ_G0004308.1 mouse_genomes_project 7 23390018 23402600 + Gm26935 antisense antisense MGP_CASTEiJ_T0087030.1 MGP_CASTEiJ_G0032088.1 mouse_genomes_project 7 123755518 123766056 - MGP_CASTEiJ_P0087030 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0015136.1 MGP_CASTEiJ_G0013299.1 mouse_genomes_project 7 9152404 9152858 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0086412.1 MGP_CASTEiJ_G0031977.1 mouse_genomes_project 7 117735809 117763392 - MGP_CASTEiJ_P0086412 Palb2 protein_coding protein_coding MGP_CASTEiJ_T0086413.1 MGP_CASTEiJ_G0031977.1 mouse_genomes_project 7 117735809 117763457 - MGP_CASTEiJ_P0086413 Palb2 protein_coding protein_coding MGP_CASTEiJ_T0086414.1 MGP_CASTEiJ_G0031977.1 mouse_genomes_project 7 117735809 117763494 - MGP_CASTEiJ_P0086414 Palb2 protein_coding protein_coding MGP_CASTEiJ_T0086415.1 MGP_CASTEiJ_G0031977.1 mouse_genomes_project 7 117735812 117742500 - Palb2 protein_coding retained_intron MGP_CASTEiJ_T0086416.1 MGP_CASTEiJ_G0031977.1 mouse_genomes_project 7 117735814 117753707 - MGP_CASTEiJ_P0086416 Palb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086417.1 MGP_CASTEiJ_G0031977.1 mouse_genomes_project 7 117742031 117763436 - MGP_CASTEiJ_P0086417 Palb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086418.1 MGP_CASTEiJ_G0031977.1 mouse_genomes_project 7 117742031 117763465 - MGP_CASTEiJ_P0086418 Palb2 protein_coding protein_coding MGP_CASTEiJ_T0086419.1 MGP_CASTEiJ_G0031977.1 mouse_genomes_project 7 117754881 117763467 - Palb2 protein_coding retained_intron MGP_CASTEiJ_T0086420.1 MGP_CASTEiJ_G0031977.1 mouse_genomes_project 7 117761416 117763533 - Palb2 protein_coding retained_intron MGP_CASTEiJ_T0015120.1 MGP_CASTEiJ_G0013283.1 mouse_genomes_project 7 2461774 2462086 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015264.1 MGP_CASTEiJ_G0013427.1 mouse_genomes_project 7 88463997 88464267 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084837.1 MGP_CASTEiJ_G0031452.1 mouse_genomes_project 7 74264781 74275358 - MGP_CASTEiJ_P0084837 Wdr73 protein_coding protein_coding MGP_CASTEiJ_T0084838.1 MGP_CASTEiJ_G0031452.1 mouse_genomes_project 7 74264782 74275321 - Wdr73 protein_coding retained_intron MGP_CASTEiJ_T0084839.1 MGP_CASTEiJ_G0031452.1 mouse_genomes_project 7 74264782 74275321 - Wdr73 protein_coding retained_intron MGP_CASTEiJ_T0084840.1 MGP_CASTEiJ_G0031452.1 mouse_genomes_project 7 74265641 74275323 - Wdr73 protein_coding retained_intron MGP_CASTEiJ_T0084841.1 MGP_CASTEiJ_G0031452.1 mouse_genomes_project 7 74267364 74275308 - Wdr73 protein_coding processed_transcript MGP_CASTEiJ_T0084842.1 MGP_CASTEiJ_G0031452.1 mouse_genomes_project 7 74267428 74275309 - MGP_CASTEiJ_P0084842 Wdr73 protein_coding protein_coding MGP_CASTEiJ_T0084843.1 MGP_CASTEiJ_G0031452.1 mouse_genomes_project 7 74267429 74274808 - Wdr73 protein_coding processed_transcript MGP_CASTEiJ_T0084844.1 MGP_CASTEiJ_G0031452.1 mouse_genomes_project 7 74268058 74274593 - Wdr73 protein_coding processed_transcript MGP_CASTEiJ_T0084845.1 MGP_CASTEiJ_G0031452.1 mouse_genomes_project 7 74272250 74275333 - Wdr73 protein_coding processed_transcript MGP_CASTEiJ_T0084846.1 MGP_CASTEiJ_G0031452.1 mouse_genomes_project 7 74274761 74275321 - Wdr73 protein_coding processed_transcript MGP_CASTEiJ_T0015307.1 MGP_CASTEiJ_G0013470.1 mouse_genomes_project 7 120933648 120934086 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002246.1 MGP_CASTEiJ_G0002165.1 mouse_genomes_project 7 130409979 130414460 - TEC TEC MGP_CASTEiJ_T0082281.1 MGP_CASTEiJ_G0030865.1 mouse_genomes_project 7 16378425 16390667 - MGP_CASTEiJ_P0082281 Zfp109 protein_coding protein_coding MGP_CASTEiJ_T0017616.1 MGP_CASTEiJ_G0014985.1 mouse_genomes_project 7 41689711 41697717 + processed_transcript processed_transcript MGP_CASTEiJ_T0017617.1 MGP_CASTEiJ_G0014985.1 mouse_genomes_project 7 41693062 41698363 + processed_transcript processed_transcript MGP_CASTEiJ_T0085356.1 MGP_CASTEiJ_G0031600.1 mouse_genomes_project 7 95160497 95206756 - MGP_CASTEiJ_P0085356 Mrpl48 protein_coding protein_coding MGP_CASTEiJ_T0085357.1 MGP_CASTEiJ_G0031600.1 mouse_genomes_project 7 95160502 95162377 - MGP_CASTEiJ_P0085357 Mrpl48 protein_coding protein_coding MGP_CASTEiJ_T0085358.1 MGP_CASTEiJ_G0031600.1 mouse_genomes_project 7 95164005 95193300 - Mrpl48 protein_coding processed_transcript MGP_CASTEiJ_T0085359.1 MGP_CASTEiJ_G0031600.1 mouse_genomes_project 7 95165344 95215120 - Mrpl48 protein_coding processed_transcript MGP_CASTEiJ_T0085360.1 MGP_CASTEiJ_G0031600.1 mouse_genomes_project 7 95167443 95229708 - Mrpl48 protein_coding processed_transcript MGP_CASTEiJ_T0085361.1 MGP_CASTEiJ_G0031600.1 mouse_genomes_project 7 95174783 95206764 - Mrpl48 protein_coding processed_transcript MGP_CASTEiJ_T0085362.1 MGP_CASTEiJ_G0031600.1 mouse_genomes_project 7 95181695 95206729 - MGP_CASTEiJ_P0085362 Mrpl48 protein_coding protein_coding MGP_CASTEiJ_T0085363.1 MGP_CASTEiJ_G0031600.1 mouse_genomes_project 7 95181710 95229405 - Mrpl48 protein_coding processed_transcript MGP_CASTEiJ_T0082805.1 MGP_CASTEiJ_G0030996.1 mouse_genomes_project 7 21276308 21288854 + MGP_CASTEiJ_P0082805 Sars2 protein_coding protein_coding MGP_CASTEiJ_T0015135.1 MGP_CASTEiJ_G0013298.1 mouse_genomes_project 7 8995267 8995481 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082334.1 MGP_CASTEiJ_G0030880.1 mouse_genomes_project 7 16748382 16797075 + MGP_CASTEiJ_P0082334 Xrcc1 protein_coding protein_coding MGP_CASTEiJ_T0082335.1 MGP_CASTEiJ_G0030880.1 mouse_genomes_project 7 16749243 16797078 + MGP_CASTEiJ_P0082335 Xrcc1 protein_coding protein_coding MGP_CASTEiJ_T0082336.1 MGP_CASTEiJ_G0030880.1 mouse_genomes_project 7 16749291 16772895 + Xrcc1 protein_coding retained_intron MGP_CASTEiJ_T0082337.1 MGP_CASTEiJ_G0030880.1 mouse_genomes_project 7 16749294 16756321 + Xrcc1 protein_coding processed_transcript MGP_CASTEiJ_T0082338.1 MGP_CASTEiJ_G0030880.1 mouse_genomes_project 7 16749374 16750637 + Xrcc1 protein_coding retained_intron MGP_CASTEiJ_T0082339.1 MGP_CASTEiJ_G0030880.1 mouse_genomes_project 7 16749422 16790605 + Xrcc1 protein_coding retained_intron MGP_CASTEiJ_T0082340.1 MGP_CASTEiJ_G0030880.1 mouse_genomes_project 7 16789231 16791206 + Xrcc1 protein_coding retained_intron MGP_CASTEiJ_T0082341.1 MGP_CASTEiJ_G0030880.1 mouse_genomes_project 7 16791027 16794359 + Xrcc1 protein_coding retained_intron MGP_CASTEiJ_T0082342.1 MGP_CASTEiJ_G0030880.1 mouse_genomes_project 7 16793368 16794377 + Xrcc1 protein_coding retained_intron MGP_CASTEiJ_T0082343.1 MGP_CASTEiJ_G0030880.1 mouse_genomes_project 7 16793526 16794593 + Xrcc1 protein_coding retained_intron MGP_CASTEiJ_T0082344.1 MGP_CASTEiJ_G0030880.1 mouse_genomes_project 7 16794196 16797080 + Xrcc1 protein_coding processed_transcript MGP_CASTEiJ_T0082345.1 MGP_CASTEiJ_G0030880.1 mouse_genomes_project 7 16795344 16797074 + Xrcc1 protein_coding retained_intron MGP_CASTEiJ_T0082346.1 MGP_CASTEiJ_G0030880.1 mouse_genomes_project 7 16795872 16797074 + Xrcc1 protein_coding processed_transcript MGP_CASTEiJ_T0084725.1 MGP_CASTEiJ_G0031436.1 mouse_genomes_project 7 73535802 73541205 - MGP_CASTEiJ_P0084725 Cib1 protein_coding protein_coding MGP_CASTEiJ_T0084726.1 MGP_CASTEiJ_G0031436.1 mouse_genomes_project 7 73535810 73541269 - MGP_CASTEiJ_P0084726 Cib1 protein_coding protein_coding MGP_CASTEiJ_T0084727.1 MGP_CASTEiJ_G0031436.1 mouse_genomes_project 7 73535810 73541210 - MGP_CASTEiJ_P0084727 Cib1 protein_coding protein_coding MGP_CASTEiJ_T0084728.1 MGP_CASTEiJ_G0031436.1 mouse_genomes_project 7 73536483 73539003 - Cib1 protein_coding retained_intron MGP_CASTEiJ_T0084729.1 MGP_CASTEiJ_G0031436.1 mouse_genomes_project 7 73536806 73541242 - Cib1 protein_coding retained_intron MGP_CASTEiJ_T0084730.1 MGP_CASTEiJ_G0031436.1 mouse_genomes_project 7 73537046 73541450 - MGP_CASTEiJ_P0084730 Cib1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084731.1 MGP_CASTEiJ_G0031436.1 mouse_genomes_project 7 73540094 73541376 - Cib1 protein_coding retained_intron MGP_CASTEiJ_T0084732.1 MGP_CASTEiJ_G0031436.1 mouse_genomes_project 7 73540210 73541226 - Cib1 protein_coding retained_intron MGP_CASTEiJ_T0085038.1 MGP_CASTEiJ_G0031523.1 mouse_genomes_project 7 83640915 83650745 - MGP_CASTEiJ_P0085038 Prss23 protein_coding protein_coding MGP_CASTEiJ_T0087280.1 MGP_CASTEiJ_G0032138.1 mouse_genomes_project 7 128410874 128498075 - MGP_CASTEiJ_P0087280 Chst15 protein_coding protein_coding MGP_CASTEiJ_T0087281.1 MGP_CASTEiJ_G0032138.1 mouse_genomes_project 7 128410874 128498589 - MGP_CASTEiJ_P0087281 Chst15 protein_coding protein_coding MGP_CASTEiJ_T0087282.1 MGP_CASTEiJ_G0032138.1 mouse_genomes_project 7 128447643 128457548 - Chst15 protein_coding processed_transcript MGP_CASTEiJ_T0086523.1 MGP_CASTEiJ_G0031998.1 mouse_genomes_project 7 121611841 121814304 - MGP_CASTEiJ_P0086523 Gsg1l protein_coding protein_coding MGP_CASTEiJ_T0100038.1 MGP_CASTEiJ_G0036951.1 mouse_genomes_project 7 116582961 116583064 - Gm25924 snRNA snRNA MGP_CASTEiJ_T0083647.1 MGP_CASTEiJ_G0031188.1 mouse_genomes_project 7 36207091 36305439 - MGP_CASTEiJ_P0083647 protein_coding protein_coding MGP_CASTEiJ_T0083648.1 MGP_CASTEiJ_G0031188.1 mouse_genomes_project 7 36207094 36625065 - MGP_CASTEiJ_P0083648 protein_coding protein_coding MGP_CASTEiJ_T0083649.1 MGP_CASTEiJ_G0031188.1 mouse_genomes_project 7 36207094 36625047 - MGP_CASTEiJ_P0083649 protein_coding protein_coding MGP_CASTEiJ_T0008571.1 MGP_CASTEiJ_G0006936.1 mouse_genomes_project 7 369316 396745 + Gm44160 lincRNA lincRNA MGP_CASTEiJ_T0087554.1 MGP_CASTEiJ_G0032220.1 mouse_genomes_project 7 137771582 137772805 + MGP_CASTEiJ_P0087554 Scgb1c1 protein_coding protein_coding MGP_CASTEiJ_T0085886.1 MGP_CASTEiJ_G0031838.1 mouse_genomes_project 7 103037436 103038502 + MGP_CASTEiJ_P0085886 Olfr483 protein_coding protein_coding MGP_CASTEiJ_T0082258.1 MGP_CASTEiJ_G0030860.1 mouse_genomes_project 7 16224254 16245997 + MGP_CASTEiJ_P0082258 Zfp180 protein_coding protein_coding MGP_CASTEiJ_T0082259.1 MGP_CASTEiJ_G0030860.1 mouse_genomes_project 7 16224317 16249562 + MGP_CASTEiJ_P0082259 Zfp180 protein_coding protein_coding MGP_CASTEiJ_T0082260.1 MGP_CASTEiJ_G0030860.1 mouse_genomes_project 7 16224340 16246418 + MGP_CASTEiJ_P0082260 Zfp180 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082261.1 MGP_CASTEiJ_G0030860.1 mouse_genomes_project 7 16237799 16242199 + Zfp180 protein_coding retained_intron MGP_CASTEiJ_T0008611.1 MGP_CASTEiJ_G0006971.1 mouse_genomes_project 7 27225838 27227150 + Gm28514 lincRNA lincRNA MGP_CASTEiJ_T0087536.1 MGP_CASTEiJ_G0032207.1 mouse_genomes_project 7 137425323 137426320 + MGP_CASTEiJ_P0087536 Olfr535 protein_coding protein_coding MGP_CASTEiJ_T0084407.1 MGP_CASTEiJ_G0031376.1 mouse_genomes_project 7 58177712 58220920 + Tarsl2 protein_coding retained_intron MGP_CASTEiJ_T0084408.1 MGP_CASTEiJ_G0031376.1 mouse_genomes_project 7 58177712 58229177 + MGP_CASTEiJ_P0084408 Tarsl2 protein_coding protein_coding MGP_CASTEiJ_T0084409.1 MGP_CASTEiJ_G0031376.1 mouse_genomes_project 7 58192439 58195100 + Tarsl2 protein_coding retained_intron MGP_CASTEiJ_T0084410.1 MGP_CASTEiJ_G0031376.1 mouse_genomes_project 7 58215203 58227178 + Tarsl2 protein_coding processed_transcript MGP_CASTEiJ_T0082244.1 MGP_CASTEiJ_G0030848.1 mouse_genomes_project 7 14815747 14831199 - MGP_CASTEiJ_P0082244 Igsf23 protein_coding protein_coding MGP_CASTEiJ_T0008686.1 MGP_CASTEiJ_G0007028.1 mouse_genomes_project 7 66293737 66298514 + 4930429H19Rik lincRNA lincRNA MGP_CASTEiJ_T0008687.1 MGP_CASTEiJ_G0007028.1 mouse_genomes_project 7 66293887 66295291 + 4930429H19Rik lincRNA lincRNA MGP_CASTEiJ_T0015131.1 MGP_CASTEiJ_G0013294.1 mouse_genomes_project 7 8919663 8923093 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084701.1 MGP_CASTEiJ_G0031429.1 mouse_genomes_project 7 73079988 73082700 + MGP_CASTEiJ_P0084701 Mesp2 protein_coding protein_coding MGP_CASTEiJ_T0015294.1 MGP_CASTEiJ_G0013457.1 mouse_genomes_project 7 105462713 105463279 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082366.1 MGP_CASTEiJ_G0030889.1 mouse_genomes_project 7 17121908 17128740 - MGP_CASTEiJ_P0082366 Lypd4 protein_coding protein_coding MGP_CASTEiJ_T0082367.1 MGP_CASTEiJ_G0030889.1 mouse_genomes_project 7 17122613 17128531 - MGP_CASTEiJ_P0082367 Lypd4 protein_coding protein_coding MGP_CASTEiJ_T0100023.1 MGP_CASTEiJ_G0036936.1 mouse_genomes_project 7 89776977 89777081 - Gm25684 snRNA snRNA MGP_CASTEiJ_T0008608.1 MGP_CASTEiJ_G0006968.1 mouse_genomes_project 7 26372358 26376331 + Gm45097 lincRNA lincRNA MGP_CASTEiJ_T0084989.1 MGP_CASTEiJ_G0031495.1 mouse_genomes_project 7 78932224 79482701 - MGP_CASTEiJ_P0084989 protein_coding protein_coding MGP_CASTEiJ_T0081865.1 MGP_CASTEiJ_G0030743.1 mouse_genomes_project 7 10553155 10569675 - MGP_CASTEiJ_P0081865 Crx protein_coding protein_coding MGP_CASTEiJ_T0081866.1 MGP_CASTEiJ_G0030743.1 mouse_genomes_project 7 10553156 10562536 - MGP_CASTEiJ_P0081866 Crx protein_coding protein_coding MGP_CASTEiJ_T0081867.1 MGP_CASTEiJ_G0030743.1 mouse_genomes_project 7 10554434 10569579 - Crx protein_coding processed_transcript MGP_CASTEiJ_T0081868.1 MGP_CASTEiJ_G0030743.1 mouse_genomes_project 7 10554434 10569551 - MGP_CASTEiJ_P0081868 Crx protein_coding protein_coding MGP_CASTEiJ_T0081869.1 MGP_CASTEiJ_G0030743.1 mouse_genomes_project 7 10555265 10559726 - MGP_CASTEiJ_P0081869 Crx protein_coding protein_coding MGP_CASTEiJ_T0081856.1 MGP_CASTEiJ_G0030737.1 mouse_genomes_project 7 9303905 9306037 - MGP_CASTEiJ_P0081856 Obox8 protein_coding protein_coding MGP_CASTEiJ_T0008645.1 MGP_CASTEiJ_G0006996.1 mouse_genomes_project 7 42745543 42746979 - Gm26856 lincRNA lincRNA MGP_CASTEiJ_T0102447.1 MGP_CASTEiJ_G0039172.1 mouse_genomes_project 7 1101986 1102822 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010590.1 MGP_CASTEiJ_G0008778.1 mouse_genomes_project 7 57505161 57505239 - Gm25249 miRNA miRNA MGP_CASTEiJ_T0008688.1 MGP_CASTEiJ_G0007029.1 mouse_genomes_project 7 66616049 66621974 + Gm44734 lincRNA lincRNA MGP_CASTEiJ_T0087895.1 MGP_CASTEiJ_G0032283.1 mouse_genomes_project 7 139752722 139762902 - MGP_CASTEiJ_P0087895 Igf2 protein_coding protein_coding MGP_CASTEiJ_T0087896.1 MGP_CASTEiJ_G0032283.1 mouse_genomes_project 7 139752725 139768310 - MGP_CASTEiJ_P0087896 Igf2 protein_coding protein_coding MGP_CASTEiJ_T0087897.1 MGP_CASTEiJ_G0032283.1 mouse_genomes_project 7 139752725 139762872 - MGP_CASTEiJ_P0087897 Igf2 protein_coding protein_coding MGP_CASTEiJ_T0087898.1 MGP_CASTEiJ_G0032283.1 mouse_genomes_project 7 139752725 139770107 - MGP_CASTEiJ_P0087898 Igf2 protein_coding protein_coding MGP_CASTEiJ_T0087899.1 MGP_CASTEiJ_G0032283.1 mouse_genomes_project 7 139752799 139758446 - Igf2 protein_coding processed_transcript MGP_CASTEiJ_T0087900.1 MGP_CASTEiJ_G0032283.1 mouse_genomes_project 7 139759168 139775983 - MGP_CASTEiJ_P0087900 Igf2 protein_coding protein_coding MGP_CASTEiJ_T0087901.1 MGP_CASTEiJ_G0032283.1 mouse_genomes_project 7 139759461 139770672 - MGP_CASTEiJ_P0087901 Igf2 protein_coding protein_coding MGP_CASTEiJ_T0087902.1 MGP_CASTEiJ_G0032283.1 mouse_genomes_project 7 139759764 139761424 - MGP_CASTEiJ_P0087902 Igf2 protein_coding protein_coding MGP_CASTEiJ_T0087903.1 MGP_CASTEiJ_G0032283.1 mouse_genomes_project 7 139760854 139770007 - Igf2 protein_coding retained_intron MGP_CASTEiJ_T0085709.1 MGP_CASTEiJ_G0031755.1 mouse_genomes_project 7 99937166 99938147 - MGP_CASTEiJ_P0085709 Olfr667 protein_coding protein_coding MGP_CASTEiJ_T0085884.1 MGP_CASTEiJ_G0031836.1 mouse_genomes_project 7 102998899 102999838 + MGP_CASTEiJ_P0085884 Olfr481 protein_coding protein_coding MGP_CASTEiJ_T0015210.1 MGP_CASTEiJ_G0013373.1 mouse_genomes_project 7 36673578 36674527 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005162.1 MGP_CASTEiJ_G0004389.1 mouse_genomes_project 7 124675838 124676937 - Gm44672 antisense antisense MGP_CASTEiJ_T0085616.1 MGP_CASTEiJ_G0031682.1 mouse_genomes_project 7 98218005 98225507 + MGP_CASTEiJ_P0085616 protein_coding protein_coding MGP_CASTEiJ_T0102541.1 MGP_CASTEiJ_G0039265.1 mouse_genomes_project 7 40897254 40898102 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008743.1 MGP_CASTEiJ_G0007063.1 mouse_genomes_project 7 93150572 93173585 - Gm15506 lincRNA lincRNA MGP_CASTEiJ_T0015118.1 MGP_CASTEiJ_G0013281.1 mouse_genomes_project 7 1519462 1520207 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082286.1 MGP_CASTEiJ_G0030868.1 mouse_genomes_project 7 16452384 16461327 - MGP_CASTEiJ_P0082286 Zfp61 protein_coding protein_coding MGP_CASTEiJ_T0082287.1 MGP_CASTEiJ_G0030868.1 mouse_genomes_project 7 16452402 16457346 - MGP_CASTEiJ_P0082287 Zfp61 protein_coding protein_coding MGP_CASTEiJ_T0082288.1 MGP_CASTEiJ_G0030868.1 mouse_genomes_project 7 16453364 16457076 - Zfp61 protein_coding processed_transcript MGP_CASTEiJ_T0082289.1 MGP_CASTEiJ_G0030868.1 mouse_genomes_project 7 16453507 16460962 - MGP_CASTEiJ_P0082289 Zfp61 protein_coding protein_coding MGP_CASTEiJ_T0082290.1 MGP_CASTEiJ_G0030868.1 mouse_genomes_project 7 16454713 16456923 - Zfp61 protein_coding retained_intron MGP_CASTEiJ_T0082291.1 MGP_CASTEiJ_G0030868.1 mouse_genomes_project 7 16456449 16460950 - Zfp61 protein_coding processed_transcript MGP_CASTEiJ_T0082292.1 MGP_CASTEiJ_G0030868.1 mouse_genomes_project 7 16456692 16461053 - Zfp61 protein_coding retained_intron MGP_CASTEiJ_T0082293.1 MGP_CASTEiJ_G0030868.1 mouse_genomes_project 7 16459281 16464755 - Zfp61 protein_coding processed_transcript MGP_CASTEiJ_T0082294.1 MGP_CASTEiJ_G0030868.1 mouse_genomes_project 7 16459753 16461289 - Zfp61 protein_coding retained_intron MGP_CASTEiJ_T0008716.1 MGP_CASTEiJ_G0007047.1 mouse_genomes_project 7 73456475 73458066 + Gm45202 lincRNA lincRNA MGP_CASTEiJ_T0084165.1 MGP_CASTEiJ_G0031319.1 mouse_genomes_project 7 41033103 41034140 - MGP_CASTEiJ_P0084165 Mrgprb5 protein_coding protein_coding MGP_CASTEiJ_T0083354.1 MGP_CASTEiJ_G0031115.1 mouse_genomes_project 7 25465361 25465817 + MGP_CASTEiJ_P0083354 Gm6096 protein_coding protein_coding MGP_CASTEiJ_T0015277.1 MGP_CASTEiJ_G0013440.1 mouse_genomes_project 7 92915427 92915745 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102595.1 MGP_CASTEiJ_G0039319.1 mouse_genomes_project 7 99613263 99614608 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0087095.1 MGP_CASTEiJ_G0032102.1 mouse_genomes_project 7 124099402 124100356 - MGP_CASTEiJ_P0087095 Cox6a2 protein_coding protein_coding MGP_CASTEiJ_T0011374.1 MGP_CASTEiJ_G0009562.1 mouse_genomes_project 7 140553688 140553749 + Gm27901 misc_RNA misc_RNA MGP_CASTEiJ_T0085707.1 MGP_CASTEiJ_G0031753.1 mouse_genomes_project 7 99755335 99759212 - MGP_CASTEiJ_P0085707 protein_coding protein_coding MGP_CASTEiJ_T0102486.1 MGP_CASTEiJ_G0039211.1 mouse_genomes_project 7 10387516 10387809 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0005491.1 MGP_CASTEiJ_G0004632.1 mouse_genomes_project 7 111758313 111759064 + AV356131 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0087072.1 MGP_CASTEiJ_G0032095.1 mouse_genomes_project 7 123869213 123873367 - MGP_CASTEiJ_P0087072 Pycard protein_coding protein_coding MGP_CASTEiJ_T0087073.1 MGP_CASTEiJ_G0032095.1 mouse_genomes_project 7 123871145 123873027 - MGP_CASTEiJ_P0087073 Pycard protein_coding protein_coding MGP_CASTEiJ_T0084346.1 MGP_CASTEiJ_G0031366.1 mouse_genomes_project 7 56449270 56454820 + MGP_CASTEiJ_P0084346 E030018B13Rik protein_coding protein_coding MGP_CASTEiJ_T0084998.1 MGP_CASTEiJ_G0031503.1 mouse_genomes_project 7 80465968 80467008 - MGP_CASTEiJ_P0084998 Olfr303 protein_coding protein_coding MGP_CASTEiJ_T0010626.1 MGP_CASTEiJ_G0008814.1 mouse_genomes_project 7 139010109 139010172 + Mir3104 miRNA miRNA MGP_CASTEiJ_T0015206.1 MGP_CASTEiJ_G0013369.1 mouse_genomes_project 7 35563834 35564564 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084159.1 MGP_CASTEiJ_G0031315.1 mouse_genomes_project 7 39957257 39975595 - MGP_CASTEiJ_P0084159 Mrgpra9 protein_coding protein_coding MGP_CASTEiJ_T0084160.1 MGP_CASTEiJ_G0031315.1 mouse_genomes_project 7 39957271 39975575 - MGP_CASTEiJ_P0084160 Mrgpra9 protein_coding protein_coding MGP_CASTEiJ_T0083546.1 MGP_CASTEiJ_G0031151.1 mouse_genomes_project 7 33582889 34430899 + protein_coding processed_transcript MGP_CASTEiJ_T0087529.1 MGP_CASTEiJ_G0032200.1 mouse_genomes_project 7 137227889 137228939 + MGP_CASTEiJ_P0087529 Olfr525 protein_coding protein_coding MGP_CASTEiJ_T0087544.1 MGP_CASTEiJ_G0032215.1 mouse_genomes_project 7 137625175 137626278 + MGP_CASTEiJ_P0087544 Olfr541 protein_coding protein_coding MGP_CASTEiJ_T0005147.1 MGP_CASTEiJ_G0004376.1 mouse_genomes_project 7 117772910 117800963 - Gm15489 antisense antisense MGP_CASTEiJ_T0083456.1 MGP_CASTEiJ_G0031133.1 mouse_genomes_project 7 27002417 27008933 - MGP_CASTEiJ_P0083456 Pdcd5 protein_coding protein_coding MGP_CASTEiJ_T0083457.1 MGP_CASTEiJ_G0031133.1 mouse_genomes_project 7 27002447 27008617 - MGP_CASTEiJ_P0083457 Pdcd5 protein_coding protein_coding MGP_CASTEiJ_T0083458.1 MGP_CASTEiJ_G0031133.1 mouse_genomes_project 7 27002449 27004574 - Pdcd5 protein_coding retained_intron MGP_CASTEiJ_T0083459.1 MGP_CASTEiJ_G0031133.1 mouse_genomes_project 7 27002451 27005279 - Pdcd5 protein_coding retained_intron MGP_CASTEiJ_T0083460.1 MGP_CASTEiJ_G0031133.1 mouse_genomes_project 7 27005245 27008916 - Pdcd5 protein_coding retained_intron MGP_CASTEiJ_T0083461.1 MGP_CASTEiJ_G0031133.1 mouse_genomes_project 7 27005610 27008892 - Pdcd5 protein_coding retained_intron MGP_CASTEiJ_T0083462.1 MGP_CASTEiJ_G0031133.1 mouse_genomes_project 7 27007103 27008878 - Pdcd5 protein_coding retained_intron MGP_CASTEiJ_T0085859.1 MGP_CASTEiJ_G0031818.1 mouse_genomes_project 7 102038272 102039220 - MGP_CASTEiJ_P0085859 protein_coding protein_coding MGP_CASTEiJ_T0101816.1 MGP_CASTEiJ_G0038580.1 mouse_genomes_project 7 9499695 9586519 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101817.1 MGP_CASTEiJ_G0038580.1 mouse_genomes_project 7 9534479 9586469 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101818.1 MGP_CASTEiJ_G0038580.1 mouse_genomes_project 7 9536418 9586519 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0011367.1 MGP_CASTEiJ_G0009555.1 mouse_genomes_project 7 133148958 133149254 - Gm24444 misc_RNA misc_RNA MGP_CASTEiJ_T0008580.1 MGP_CASTEiJ_G0006943.1 mouse_genomes_project 7 13714848 13718988 - Gm26821 lincRNA lincRNA MGP_CASTEiJ_T0087257.1 MGP_CASTEiJ_G0032131.1 mouse_genomes_project 7 127511111 127536439 - MGP_CASTEiJ_P0087257 Ikzf5 protein_coding protein_coding MGP_CASTEiJ_T0087258.1 MGP_CASTEiJ_G0032131.1 mouse_genomes_project 7 127512824 127536415 - MGP_CASTEiJ_P0087258 Ikzf5 protein_coding protein_coding MGP_CASTEiJ_T0087259.1 MGP_CASTEiJ_G0032131.1 mouse_genomes_project 7 127514982 127536296 - MGP_CASTEiJ_P0087259 Ikzf5 protein_coding protein_coding MGP_CASTEiJ_T0087260.1 MGP_CASTEiJ_G0032131.1 mouse_genomes_project 7 127515851 127536413 - MGP_CASTEiJ_P0087260 Ikzf5 protein_coding protein_coding MGP_CASTEiJ_T0087261.1 MGP_CASTEiJ_G0032131.1 mouse_genomes_project 7 127522518 127535000 - MGP_CASTEiJ_P0087261 Ikzf5 protein_coding protein_coding MGP_CASTEiJ_T0084966.1 MGP_CASTEiJ_G0031485.1 mouse_genomes_project 7 77433431 77448260 + Mesdc2 protein_coding processed_transcript MGP_CASTEiJ_T0084967.1 MGP_CASTEiJ_G0031485.1 mouse_genomes_project 7 77440908 77451839 + MGP_CASTEiJ_P0084967 Mesdc2 protein_coding protein_coding MGP_CASTEiJ_T0084968.1 MGP_CASTEiJ_G0031485.1 mouse_genomes_project 7 77440910 77448087 + MGP_CASTEiJ_P0084968 Mesdc2 protein_coding protein_coding MGP_CASTEiJ_T0084969.1 MGP_CASTEiJ_G0031485.1 mouse_genomes_project 7 77441238 77448400 + MGP_CASTEiJ_P0084969 Mesdc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086886.1 MGP_CASTEiJ_G0032062.1 mouse_genomes_project 7 123225083 123234042 - MGP_CASTEiJ_P0086886 protein_coding protein_coding MGP_CASTEiJ_T0015134.1 MGP_CASTEiJ_G0013297.1 mouse_genomes_project 7 8995266 8995480 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002159.1 MGP_CASTEiJ_G0002079.1 mouse_genomes_project 7 47769322 47770858 + TEC TEC MGP_CASTEiJ_T0083861.1 MGP_CASTEiJ_G0031240.1 mouse_genomes_project 7 37650565 37666388 + MGP_CASTEiJ_P0083861 Slc17a7 protein_coding protein_coding MGP_CASTEiJ_T0099994.1 MGP_CASTEiJ_G0036907.1 mouse_genomes_project 7 10947848 10947970 - Gm26473 snRNA snRNA MGP_CASTEiJ_T0084965.1 MGP_CASTEiJ_G0031484.1 mouse_genomes_project 7 77426741 77433271 - MGP_CASTEiJ_P0084965 Mesdc1 protein_coding protein_coding MGP_CASTEiJ_T0087976.1 MGP_CASTEiJ_G0032298.1 mouse_genomes_project 7 140731276 140753830 - MGP_CASTEiJ_P0087976 Tnfrsf26 protein_coding protein_coding MGP_CASTEiJ_T0083895.1 MGP_CASTEiJ_G0031248.1 mouse_genomes_project 7 37790943 37839982 - MGP_CASTEiJ_P0083895 Trpm4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083896.1 MGP_CASTEiJ_G0031248.1 mouse_genomes_project 7 37807516 37840005 - MGP_CASTEiJ_P0083896 Trpm4 protein_coding protein_coding MGP_CASTEiJ_T0102566.1 MGP_CASTEiJ_G0039290.1 mouse_genomes_project 7 79737094 79737831 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0086349.1 MGP_CASTEiJ_G0031960.1 mouse_genomes_project 7 116385494 116453778 + MGP_CASTEiJ_P0086349 Eef2k protein_coding unknown_likely_coding MGP_CASTEiJ_T0086350.1 MGP_CASTEiJ_G0031960.1 mouse_genomes_project 7 116385495 116453542 + MGP_CASTEiJ_P0086350 Eef2k protein_coding protein_coding MGP_CASTEiJ_T0086351.1 MGP_CASTEiJ_G0031960.1 mouse_genomes_project 7 116386265 116450328 + MGP_CASTEiJ_P0086351 Eef2k protein_coding protein_coding MGP_CASTEiJ_T0086352.1 MGP_CASTEiJ_G0031960.1 mouse_genomes_project 7 116386283 116402575 + MGP_CASTEiJ_P0086352 Eef2k protein_coding protein_coding MGP_CASTEiJ_T0086353.1 MGP_CASTEiJ_G0031960.1 mouse_genomes_project 7 116395302 116446767 + MGP_CASTEiJ_P0086353 Eef2k protein_coding protein_coding MGP_CASTEiJ_T0086354.1 MGP_CASTEiJ_G0031960.1 mouse_genomes_project 7 116395302 116426744 + MGP_CASTEiJ_P0086354 Eef2k protein_coding protein_coding MGP_CASTEiJ_T0086355.1 MGP_CASTEiJ_G0031960.1 mouse_genomes_project 7 116395314 116449828 + MGP_CASTEiJ_P0086355 Eef2k protein_coding protein_coding MGP_CASTEiJ_T0086356.1 MGP_CASTEiJ_G0031960.1 mouse_genomes_project 7 116422148 116426271 + Eef2k protein_coding retained_intron MGP_CASTEiJ_T0086357.1 MGP_CASTEiJ_G0031960.1 mouse_genomes_project 7 116436099 116441739 + MGP_CASTEiJ_P0086357 Eef2k protein_coding protein_coding MGP_CASTEiJ_T0086358.1 MGP_CASTEiJ_G0031960.1 mouse_genomes_project 7 116438272 116449910 + Eef2k protein_coding processed_transcript MGP_CASTEiJ_T0082126.1 MGP_CASTEiJ_G0030817.1 mouse_genomes_project 7 14121974 14142832 + MGP_CASTEiJ_P0082126 Ercc1 protein_coding protein_coding MGP_CASTEiJ_T0082127.1 MGP_CASTEiJ_G0030817.1 mouse_genomes_project 7 14122265 14142067 + Ercc1 protein_coding retained_intron MGP_CASTEiJ_T0082128.1 MGP_CASTEiJ_G0030817.1 mouse_genomes_project 7 14122271 14130161 + Ercc1 protein_coding retained_intron MGP_CASTEiJ_T0082129.1 MGP_CASTEiJ_G0030817.1 mouse_genomes_project 7 14122313 14141436 + MGP_CASTEiJ_P0082129 Ercc1 protein_coding protein_coding MGP_CASTEiJ_T0082130.1 MGP_CASTEiJ_G0030817.1 mouse_genomes_project 7 14122324 14129807 + MGP_CASTEiJ_P0082130 Ercc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082131.1 MGP_CASTEiJ_G0030817.1 mouse_genomes_project 7 14127023 14133707 + MGP_CASTEiJ_P0082131 Ercc1 protein_coding protein_coding MGP_CASTEiJ_T0082132.1 MGP_CASTEiJ_G0030817.1 mouse_genomes_project 7 14128033 14140943 + Ercc1 protein_coding processed_transcript MGP_CASTEiJ_T0082133.1 MGP_CASTEiJ_G0030817.1 mouse_genomes_project 7 14131416 14141773 + Ercc1 protein_coding retained_intron MGP_CASTEiJ_T0082134.1 MGP_CASTEiJ_G0030817.1 mouse_genomes_project 7 14133634 14142830 + MGP_CASTEiJ_P0082134 Ercc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082135.1 MGP_CASTEiJ_G0030817.1 mouse_genomes_project 7 14140963 14142831 + Ercc1 protein_coding retained_intron MGP_CASTEiJ_T0087290.1 MGP_CASTEiJ_G0032142.1 mouse_genomes_project 7 128943397 129008742 - MGP_CASTEiJ_P0087290 Fam53b protein_coding protein_coding MGP_CASTEiJ_T0087291.1 MGP_CASTEiJ_G0032142.1 mouse_genomes_project 7 128988687 129016454 - MGP_CASTEiJ_P0087291 Fam53b protein_coding protein_coding MGP_CASTEiJ_T0087292.1 MGP_CASTEiJ_G0032142.1 mouse_genomes_project 7 128988687 129046463 - MGP_CASTEiJ_P0087292 Fam53b protein_coding protein_coding MGP_CASTEiJ_T0087293.1 MGP_CASTEiJ_G0032142.1 mouse_genomes_project 7 128989522 129047094 - MGP_CASTEiJ_P0087293 Fam53b protein_coding protein_coding MGP_CASTEiJ_T0087294.1 MGP_CASTEiJ_G0032142.1 mouse_genomes_project 7 129008664 129038837 - MGP_CASTEiJ_P0087294 Fam53b protein_coding protein_coding MGP_CASTEiJ_T0087295.1 MGP_CASTEiJ_G0032142.1 mouse_genomes_project 7 129008775 129009836 - Fam53b protein_coding processed_transcript MGP_CASTEiJ_T0087296.1 MGP_CASTEiJ_G0032142.1 mouse_genomes_project 7 129008834 129034206 - Fam53b protein_coding processed_transcript MGP_CASTEiJ_T0081356.1 MGP_CASTEiJ_G0030587.1 mouse_genomes_project 7 194308 204520 + MGP_CASTEiJ_P0081356 Myadm protein_coding protein_coding MGP_CASTEiJ_T0081358.1 MGP_CASTEiJ_G0030587.1 mouse_genomes_project 7 195768 205586 + MGP_CASTEiJ_P0081358 Myadm protein_coding protein_coding MGP_CASTEiJ_T0081359.1 MGP_CASTEiJ_G0030587.1 mouse_genomes_project 7 195809 206681 + MGP_CASTEiJ_P0081359 Myadm protein_coding protein_coding MGP_CASTEiJ_T0081360.1 MGP_CASTEiJ_G0030587.1 mouse_genomes_project 7 196721 203215 + MGP_CASTEiJ_P0081360 Myadm protein_coding protein_coding MGP_CASTEiJ_T0081361.1 MGP_CASTEiJ_G0030587.1 mouse_genomes_project 7 199309 205559 + MGP_CASTEiJ_P0081361 Myadm protein_coding protein_coding MGP_CASTEiJ_T0083159.1 MGP_CASTEiJ_G0031076.1 mouse_genomes_project 7 23351789 23352387 + MGP_CASTEiJ_P0083159 2200002J24Rik protein_coding protein_coding MGP_CASTEiJ_T0083010.1 MGP_CASTEiJ_G0031046.1 mouse_genomes_project 7 22873823 22916018 - MGP_CASTEiJ_P0083010 Wdr62 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083011.1 MGP_CASTEiJ_G0031046.1 mouse_genomes_project 7 22873823 22916041 - MGP_CASTEiJ_P0083011 Wdr62 protein_coding protein_coding MGP_CASTEiJ_T0083012.1 MGP_CASTEiJ_G0031046.1 mouse_genomes_project 7 22873823 22897410 - MGP_CASTEiJ_P0083012 Wdr62 protein_coding protein_coding MGP_CASTEiJ_T0083013.1 MGP_CASTEiJ_G0031046.1 mouse_genomes_project 7 22873828 22874569 - Wdr62 protein_coding processed_transcript MGP_CASTEiJ_T0083014.1 MGP_CASTEiJ_G0031046.1 mouse_genomes_project 7 22875382 22875958 - MGP_CASTEiJ_P0083014 Wdr62 protein_coding protein_coding MGP_CASTEiJ_T0083015.1 MGP_CASTEiJ_G0031046.1 mouse_genomes_project 7 22879107 22885535 - Wdr62 protein_coding retained_intron MGP_CASTEiJ_T0083016.1 MGP_CASTEiJ_G0031046.1 mouse_genomes_project 7 22883481 22884225 - Wdr62 protein_coding retained_intron MGP_CASTEiJ_T0102517.1 MGP_CASTEiJ_G0039241.1 mouse_genomes_project 7 36203533 36303384 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102532.1 MGP_CASTEiJ_G0039256.1 mouse_genomes_project 7 40250547 40792665 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010593.1 MGP_CASTEiJ_G0008781.1 mouse_genomes_project 7 71186088 71186186 - Gm44358 miRNA miRNA MGP_CASTEiJ_T0010568.1 MGP_CASTEiJ_G0008756.1 mouse_genomes_project 7 54192246 54192325 - Gm25533 miRNA miRNA MGP_CASTEiJ_T0084411.1 MGP_CASTEiJ_G0031377.1 mouse_genomes_project 7 58228253 58239798 + MGP_CASTEiJ_P0084411 Tm2d3 protein_coding protein_coding MGP_CASTEiJ_T0084412.1 MGP_CASTEiJ_G0031377.1 mouse_genomes_project 7 58230499 58239789 + MGP_CASTEiJ_P0084412 Tm2d3 protein_coding protein_coding MGP_CASTEiJ_T0084413.1 MGP_CASTEiJ_G0031377.1 mouse_genomes_project 7 58230508 58239800 + MGP_CASTEiJ_P0084413 Tm2d3 protein_coding protein_coding MGP_CASTEiJ_T0084414.1 MGP_CASTEiJ_G0031377.1 mouse_genomes_project 7 58230538 58235581 + MGP_CASTEiJ_P0084414 Tm2d3 protein_coding protein_coding MGP_CASTEiJ_T0084415.1 MGP_CASTEiJ_G0031377.1 mouse_genomes_project 7 58230558 58235728 + MGP_CASTEiJ_P0084415 Tm2d3 protein_coding protein_coding MGP_CASTEiJ_T0084416.1 MGP_CASTEiJ_G0031377.1 mouse_genomes_project 7 58230567 58239787 + MGP_CASTEiJ_P0084416 Tm2d3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084417.1 MGP_CASTEiJ_G0031377.1 mouse_genomes_project 7 58230568 58239789 + MGP_CASTEiJ_P0084417 Tm2d3 protein_coding protein_coding MGP_CASTEiJ_T0084418.1 MGP_CASTEiJ_G0031377.1 mouse_genomes_project 7 58230572 58232284 + MGP_CASTEiJ_P0084418 Tm2d3 protein_coding protein_coding MGP_CASTEiJ_T0084419.1 MGP_CASTEiJ_G0031377.1 mouse_genomes_project 7 58230615 58237036 + MGP_CASTEiJ_P0084419 Tm2d3 protein_coding protein_coding MGP_CASTEiJ_T0084420.1 MGP_CASTEiJ_G0031377.1 mouse_genomes_project 7 58230615 58235723 + MGP_CASTEiJ_P0084420 Tm2d3 protein_coding protein_coding MGP_CASTEiJ_T0084979.1 MGP_CASTEiJ_G0031489.1 mouse_genomes_project 7 78171338 78194231 - MGP_CASTEiJ_P0084979 Fah protein_coding protein_coding MGP_CASTEiJ_T0084980.1 MGP_CASTEiJ_G0031489.1 mouse_genomes_project 7 78184245 78195125 - MGP_CASTEiJ_P0084980 Fah protein_coding protein_coding MGP_CASTEiJ_T0084981.1 MGP_CASTEiJ_G0031489.1 mouse_genomes_project 7 78189810 78190834 - Fah protein_coding processed_transcript MGP_CASTEiJ_T0084982.1 MGP_CASTEiJ_G0031489.1 mouse_genomes_project 7 78190354 78194133 - Fah protein_coding retained_intron MGP_CASTEiJ_T0082030.1 MGP_CASTEiJ_G0030791.1 mouse_genomes_project 7 13577513 13600662 + MGP_CASTEiJ_P0082030 Mill2 protein_coding protein_coding MGP_CASTEiJ_T0082031.1 MGP_CASTEiJ_G0030791.1 mouse_genomes_project 7 13577513 13600662 + MGP_CASTEiJ_P0082031 Mill2 protein_coding protein_coding MGP_CASTEiJ_T0082032.1 MGP_CASTEiJ_G0030791.1 mouse_genomes_project 7 13577536 13605093 + MGP_CASTEiJ_P0082032 Mill2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082033.1 MGP_CASTEiJ_G0030791.1 mouse_genomes_project 7 13577548 13597987 + Mill2 protein_coding processed_transcript MGP_CASTEiJ_T0083377.1 MGP_CASTEiJ_G0031118.1 mouse_genomes_project 7 25919130 26079195 - MGP_CASTEiJ_P0083377 Chst8 protein_coding protein_coding MGP_CASTEiJ_T0083378.1 MGP_CASTEiJ_G0031118.1 mouse_genomes_project 7 25919419 26079195 - MGP_CASTEiJ_P0083378 Chst8 protein_coding protein_coding MGP_CASTEiJ_T0083379.1 MGP_CASTEiJ_G0031118.1 mouse_genomes_project 7 25920479 26079220 - Chst8 protein_coding processed_transcript MGP_CASTEiJ_T0083380.1 MGP_CASTEiJ_G0031118.1 mouse_genomes_project 7 25941075 25944238 - Chst8 protein_coding processed_transcript MGP_CASTEiJ_T0083381.1 MGP_CASTEiJ_G0031118.1 mouse_genomes_project 7 25941877 26079181 - Chst8 protein_coding processed_transcript MGP_CASTEiJ_T0102559.1 MGP_CASTEiJ_G0039283.1 mouse_genomes_project 7 78932316 78933177 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0005085.1 MGP_CASTEiJ_G0004335.1 mouse_genomes_project 7 66297338 66364375 - A730056A06Rik antisense antisense MGP_CASTEiJ_T0005086.1 MGP_CASTEiJ_G0004335.1 mouse_genomes_project 7 66299573 66364384 - A730056A06Rik antisense antisense MGP_CASTEiJ_T0085109.1 MGP_CASTEiJ_G0031543.1 mouse_genomes_project 7 87133032 87193571 + MGP_CASTEiJ_P0085109 Prcp protein_coding protein_coding MGP_CASTEiJ_T0082000.1 MGP_CASTEiJ_G0030779.1 mouse_genomes_project 7 11795940 11819256 - MGP_CASTEiJ_P0082000 Ppp5c protein_coding protein_coding MGP_CASTEiJ_T0082001.1 MGP_CASTEiJ_G0030779.1 mouse_genomes_project 7 11795940 11819286 - MGP_CASTEiJ_P0082001 Ppp5c protein_coding unknown_likely_coding MGP_CASTEiJ_T0082002.1 MGP_CASTEiJ_G0030779.1 mouse_genomes_project 7 11796403 11798371 - Ppp5c protein_coding retained_intron MGP_CASTEiJ_T0082003.1 MGP_CASTEiJ_G0030779.1 mouse_genomes_project 7 11798440 11806728 - Ppp5c protein_coding retained_intron MGP_CASTEiJ_T0082004.1 MGP_CASTEiJ_G0030779.1 mouse_genomes_project 7 11799012 11819367 - Ppp5c protein_coding processed_transcript MGP_CASTEiJ_T0082005.1 MGP_CASTEiJ_G0030779.1 mouse_genomes_project 7 11799021 11800429 - Ppp5c protein_coding retained_intron MGP_CASTEiJ_T0082006.1 MGP_CASTEiJ_G0030779.1 mouse_genomes_project 7 11799817 11819337 - Ppp5c protein_coding processed_transcript MGP_CASTEiJ_T0082007.1 MGP_CASTEiJ_G0030779.1 mouse_genomes_project 7 11799841 11801379 - Ppp5c protein_coding retained_intron MGP_CASTEiJ_T0082008.1 MGP_CASTEiJ_G0030779.1 mouse_genomes_project 7 11801189 11816114 - Ppp5c protein_coding processed_transcript MGP_CASTEiJ_T0082009.1 MGP_CASTEiJ_G0030779.1 mouse_genomes_project 7 11806720 11819058 - Ppp5c protein_coding processed_transcript MGP_CASTEiJ_T0082010.1 MGP_CASTEiJ_G0030779.1 mouse_genomes_project 7 11813743 11819232 - Ppp5c protein_coding processed_transcript MGP_CASTEiJ_T0084997.1 MGP_CASTEiJ_G0031502.1 mouse_genomes_project 7 80459896 80460898 - MGP_CASTEiJ_P0084997 Olfr304 protein_coding protein_coding MGP_CASTEiJ_T0008638.1 MGP_CASTEiJ_G0006990.1 mouse_genomes_project 7 35736211 35736583 + Gm44818 lincRNA lincRNA MGP_CASTEiJ_T0086896.1 MGP_CASTEiJ_G0032066.1 mouse_genomes_project 7 123307690 123321470 + Prr14 protein_coding processed_transcript MGP_CASTEiJ_T0086897.1 MGP_CASTEiJ_G0032066.1 mouse_genomes_project 7 123320845 123327233 + MGP_CASTEiJ_P0086897 Prr14 protein_coding protein_coding MGP_CASTEiJ_T0086898.1 MGP_CASTEiJ_G0032066.1 mouse_genomes_project 7 123321492 123324328 + MGP_CASTEiJ_P0086898 Prr14 protein_coding protein_coding MGP_CASTEiJ_T0086899.1 MGP_CASTEiJ_G0032066.1 mouse_genomes_project 7 123321502 123324191 + MGP_CASTEiJ_P0086899 Prr14 protein_coding protein_coding MGP_CASTEiJ_T0086900.1 MGP_CASTEiJ_G0032066.1 mouse_genomes_project 7 123321525 123324299 + Prr14 protein_coding retained_intron MGP_CASTEiJ_T0086901.1 MGP_CASTEiJ_G0032066.1 mouse_genomes_project 7 123321922 123323578 + Prr14 protein_coding retained_intron MGP_CASTEiJ_T0086902.1 MGP_CASTEiJ_G0032066.1 mouse_genomes_project 7 123321963 123327232 + MGP_CASTEiJ_P0086902 Prr14 protein_coding protein_coding MGP_CASTEiJ_T0086903.1 MGP_CASTEiJ_G0032066.1 mouse_genomes_project 7 123322374 123325686 + Prr14 protein_coding retained_intron MGP_CASTEiJ_T0086904.1 MGP_CASTEiJ_G0032066.1 mouse_genomes_project 7 123324096 123325744 + MGP_CASTEiJ_P0086904 Prr14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086905.1 MGP_CASTEiJ_G0032066.1 mouse_genomes_project 7 123325974 123327231 + Prr14 protein_coding retained_intron MGP_CASTEiJ_T0086906.1 MGP_CASTEiJ_G0032066.1 mouse_genomes_project 7 123325992 123327229 + MGP_CASTEiJ_P0086906 Prr14 protein_coding protein_coding MGP_CASTEiJ_T0085640.1 MGP_CASTEiJ_G0031706.1 mouse_genomes_project 7 98621787 98622750 - MGP_CASTEiJ_P0085640 Olfr67 protein_coding protein_coding MGP_CASTEiJ_T0086868.1 MGP_CASTEiJ_G0032054.1 mouse_genomes_project 7 123047095 123052208 + MGP_CASTEiJ_P0086868 Zfp553 protein_coding protein_coding MGP_CASTEiJ_T0086869.1 MGP_CASTEiJ_G0032054.1 mouse_genomes_project 7 123047295 123052072 + MGP_CASTEiJ_P0086869 Zfp553 protein_coding protein_coding MGP_CASTEiJ_T0086870.1 MGP_CASTEiJ_G0032054.1 mouse_genomes_project 7 123047334 123048161 + Zfp553 protein_coding retained_intron MGP_CASTEiJ_T0087248.1 MGP_CASTEiJ_G0032128.1 mouse_genomes_project 7 127462864 127464916 + MGP_CASTEiJ_P0087248 Fam24a protein_coding protein_coding MGP_CASTEiJ_T0082153.1 MGP_CASTEiJ_G0030821.1 mouse_genomes_project 7 14184070 14193393 - MGP_CASTEiJ_P0082153 Klc3 protein_coding protein_coding MGP_CASTEiJ_T0082154.1 MGP_CASTEiJ_G0030821.1 mouse_genomes_project 7 14184073 14189202 - MGP_CASTEiJ_P0082154 Klc3 protein_coding protein_coding MGP_CASTEiJ_T0082155.1 MGP_CASTEiJ_G0030821.1 mouse_genomes_project 7 14184073 14189159 - MGP_CASTEiJ_P0082155 Klc3 protein_coding protein_coding MGP_CASTEiJ_T0082156.1 MGP_CASTEiJ_G0030821.1 mouse_genomes_project 7 14184134 14185616 - Klc3 protein_coding retained_intron MGP_CASTEiJ_T0082157.1 MGP_CASTEiJ_G0030821.1 mouse_genomes_project 7 14184197 14188833 - MGP_CASTEiJ_P0082157 Klc3 protein_coding protein_coding MGP_CASTEiJ_T0082158.1 MGP_CASTEiJ_G0030821.1 mouse_genomes_project 7 14184987 14186206 - Klc3 protein_coding retained_intron MGP_CASTEiJ_T0010600.1 MGP_CASTEiJ_G0008788.1 mouse_genomes_project 7 94075398 94075493 + Mir326 miRNA miRNA MGP_CASTEiJ_T0083889.1 MGP_CASTEiJ_G0031247.1 mouse_genomes_project 7 37780151 37791637 + MGP_CASTEiJ_P0083889 protein_coding protein_coding MGP_CASTEiJ_T0083890.1 MGP_CASTEiJ_G0031247.1 mouse_genomes_project 7 37785147 37787908 + protein_coding processed_transcript MGP_CASTEiJ_T0083891.1 MGP_CASTEiJ_G0031247.1 mouse_genomes_project 7 37785392 37789302 + protein_coding retained_intron MGP_CASTEiJ_T0083892.1 MGP_CASTEiJ_G0031247.1 mouse_genomes_project 7 37785428 37791224 + MGP_CASTEiJ_P0083892 protein_coding protein_coding MGP_CASTEiJ_T0083893.1 MGP_CASTEiJ_G0031247.1 mouse_genomes_project 7 37785525 37791636 + MGP_CASTEiJ_P0083893 protein_coding protein_coding MGP_CASTEiJ_T0083894.1 MGP_CASTEiJ_G0031247.1 mouse_genomes_project 7 37789778 37791641 + protein_coding retained_intron MGP_CASTEiJ_T0010561.1 MGP_CASTEiJ_G0008749.1 mouse_genomes_project 7 37604122 37604187 + Mir150 miRNA miRNA MGP_CASTEiJ_T0082308.1 MGP_CASTEiJ_G0030873.1 mouse_genomes_project 7 16571954 16580554 + Smg9 protein_coding retained_intron MGP_CASTEiJ_T0082309.1 MGP_CASTEiJ_G0030873.1 mouse_genomes_project 7 16571954 16596540 + MGP_CASTEiJ_P0082309 Smg9 protein_coding protein_coding MGP_CASTEiJ_T0082310.1 MGP_CASTEiJ_G0030873.1 mouse_genomes_project 7 16572059 16578124 + Smg9 protein_coding retained_intron MGP_CASTEiJ_T0082311.1 MGP_CASTEiJ_G0030873.1 mouse_genomes_project 7 16572256 16579844 + MGP_CASTEiJ_P0082311 Smg9 protein_coding protein_coding MGP_CASTEiJ_T0082312.1 MGP_CASTEiJ_G0030873.1 mouse_genomes_project 7 16588527 16594693 + Smg9 protein_coding retained_intron MGP_CASTEiJ_T0082313.1 MGP_CASTEiJ_G0030873.1 mouse_genomes_project 7 16588769 16594693 + MGP_CASTEiJ_P0082313 Smg9 protein_coding protein_coding MGP_CASTEiJ_T0082314.1 MGP_CASTEiJ_G0030873.1 mouse_genomes_project 7 16593951 16596401 + Smg9 protein_coding retained_intron MGP_CASTEiJ_T0081778.1 MGP_CASTEiJ_G0030716.1 mouse_genomes_project 7 8097450 8105562 + MGP_CASTEiJ_P0081778 Zfp324 protein_coding protein_coding MGP_CASTEiJ_T0081779.1 MGP_CASTEiJ_G0030716.1 mouse_genomes_project 7 8097457 8105975 + MGP_CASTEiJ_P0081779 Zfp324 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081780.1 MGP_CASTEiJ_G0030716.1 mouse_genomes_project 7 8097479 8105539 + MGP_CASTEiJ_P0081780 Zfp324 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0010627.1 MGP_CASTEiJ_G0008815.1 mouse_genomes_project 7 139670540 139670624 - Mir675 miRNA miRNA MGP_CASTEiJ_T0017596.1 MGP_CASTEiJ_G0014980.1 mouse_genomes_project 7 36635693 36653392 + Gm28496 processed_transcript processed_transcript MGP_CASTEiJ_T0017597.1 MGP_CASTEiJ_G0014980.1 mouse_genomes_project 7 36635741 36652560 + Gm28496 processed_transcript processed_transcript MGP_CASTEiJ_T0081737.1 MGP_CASTEiJ_G0030697.1 mouse_genomes_project 7 7022968 7023880 + MGP_CASTEiJ_P0081737 Vmn1r75 protein_coding protein_coding MGP_CASTEiJ_T0015265.1 MGP_CASTEiJ_G0013428.1 mouse_genomes_project 7 88764345 88764477 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017673.1 MGP_CASTEiJ_G0015010.1 mouse_genomes_project 7 124320193 124322219 - Gm15503 processed_transcript retained_intron MGP_CASTEiJ_T0017674.1 MGP_CASTEiJ_G0015010.1 mouse_genomes_project 7 124321645 124323567 - Gm15503 processed_transcript sense_intronic MGP_CASTEiJ_T0083565.1 MGP_CASTEiJ_G0031156.1 mouse_genomes_project 7 35598563 35599832 + MGP_CASTEiJ_P0083565 protein_coding protein_coding MGP_CASTEiJ_T0102450.1 MGP_CASTEiJ_G0039175.1 mouse_genomes_project 7 5672604 5676391 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0081805.1 MGP_CASTEiJ_G0030722.1 mouse_genomes_project 7 8174304 8177430 - MGP_CASTEiJ_P0081805 Ube2m protein_coding protein_coding MGP_CASTEiJ_T0081806.1 MGP_CASTEiJ_G0030722.1 mouse_genomes_project 7 8174424 8177428 - MGP_CASTEiJ_P0081806 Ube2m protein_coding protein_coding MGP_CASTEiJ_T0081807.1 MGP_CASTEiJ_G0030722.1 mouse_genomes_project 7 8174445 8176804 - Ube2m protein_coding processed_transcript MGP_CASTEiJ_T0081808.1 MGP_CASTEiJ_G0030722.1 mouse_genomes_project 7 8174515 8176784 - MGP_CASTEiJ_P0081808 Ube2m protein_coding protein_coding MGP_CASTEiJ_T0081809.1 MGP_CASTEiJ_G0030722.1 mouse_genomes_project 7 8174771 8175805 - MGP_CASTEiJ_P0081809 Ube2m protein_coding protein_coding MGP_CASTEiJ_T0081810.1 MGP_CASTEiJ_G0030722.1 mouse_genomes_project 7 8175159 8176903 - Ube2m protein_coding retained_intron MGP_CASTEiJ_T0081811.1 MGP_CASTEiJ_G0030722.1 mouse_genomes_project 7 8175598 8177428 - MGP_CASTEiJ_P0081811 Ube2m protein_coding protein_coding MGP_CASTEiJ_T0081812.1 MGP_CASTEiJ_G0030722.1 mouse_genomes_project 7 8175722 8176678 - Ube2m protein_coding processed_transcript MGP_CASTEiJ_T0084515.1 MGP_CASTEiJ_G0031393.1 mouse_genomes_project 7 60384599 60414116 - MGP_CASTEiJ_P0084515 Synm protein_coding protein_coding MGP_CASTEiJ_T0084516.1 MGP_CASTEiJ_G0031393.1 mouse_genomes_project 7 60384599 60414116 - MGP_CASTEiJ_P0084516 Synm protein_coding protein_coding MGP_CASTEiJ_T0084517.1 MGP_CASTEiJ_G0031393.1 mouse_genomes_project 7 60387604 60414121 - MGP_CASTEiJ_P0084517 Synm protein_coding unknown_likely_coding MGP_CASTEiJ_T0087422.1 MGP_CASTEiJ_G0032172.1 mouse_genomes_project 7 135755798 135892614 + MGP_CASTEiJ_P0087422 Jakmip3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0087423.1 MGP_CASTEiJ_G0032172.1 mouse_genomes_project 7 135755799 135855480 + MGP_CASTEiJ_P0087423 Jakmip3 protein_coding protein_coding MGP_CASTEiJ_T0087424.1 MGP_CASTEiJ_G0032172.1 mouse_genomes_project 7 135755819 135855474 + MGP_CASTEiJ_P0087424 Jakmip3 protein_coding protein_coding MGP_CASTEiJ_T0087425.1 MGP_CASTEiJ_G0032172.1 mouse_genomes_project 7 135872969 135892608 + MGP_CASTEiJ_P0087425 Jakmip3 protein_coding protein_coding MGP_CASTEiJ_T0101237.1 MGP_CASTEiJ_G0038150.1 mouse_genomes_project 7 37903279 37903433 + Gm22478 snoRNA snoRNA MGP_CASTEiJ_T0087735.1 MGP_CASTEiJ_G0032257.1 mouse_genomes_project 7 138434383 138440254 - Pidd1 protein_coding retained_intron MGP_CASTEiJ_T0087736.1 MGP_CASTEiJ_G0032257.1 mouse_genomes_project 7 138434383 138439618 - MGP_CASTEiJ_P0087736 Pidd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087737.1 MGP_CASTEiJ_G0032257.1 mouse_genomes_project 7 138434383 138439615 - MGP_CASTEiJ_P0087737 Pidd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087738.1 MGP_CASTEiJ_G0032257.1 mouse_genomes_project 7 138434383 138440287 - MGP_CASTEiJ_P0087738 Pidd1 protein_coding protein_coding MGP_CASTEiJ_T0087739.1 MGP_CASTEiJ_G0032257.1 mouse_genomes_project 7 138434387 138440270 - Pidd1 protein_coding retained_intron MGP_CASTEiJ_T0087740.1 MGP_CASTEiJ_G0032257.1 mouse_genomes_project 7 138434395 138439618 - Pidd1 protein_coding retained_intron MGP_CASTEiJ_T0087741.1 MGP_CASTEiJ_G0032257.1 mouse_genomes_project 7 138434787 138439617 - MGP_CASTEiJ_P0087741 Pidd1 protein_coding protein_coding MGP_CASTEiJ_T0087742.1 MGP_CASTEiJ_G0032257.1 mouse_genomes_project 7 138434797 138439582 - MGP_CASTEiJ_P0087742 Pidd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087743.1 MGP_CASTEiJ_G0032257.1 mouse_genomes_project 7 138434802 138439582 - Pidd1 protein_coding retained_intron MGP_CASTEiJ_T0087744.1 MGP_CASTEiJ_G0032257.1 mouse_genomes_project 7 138435771 138436387 - Pidd1 protein_coding retained_intron MGP_CASTEiJ_T0087745.1 MGP_CASTEiJ_G0032257.1 mouse_genomes_project 7 138437312 138438551 - Pidd1 protein_coding retained_intron MGP_CASTEiJ_T0087746.1 MGP_CASTEiJ_G0032257.1 mouse_genomes_project 7 138438427 138440256 - Pidd1 protein_coding processed_transcript MGP_CASTEiJ_T0084951.1 MGP_CASTEiJ_G0031481.1 mouse_genomes_project 7 77163222 77173718 + MGP_CASTEiJ_P0084951 Stard5 protein_coding protein_coding MGP_CASTEiJ_T0084952.1 MGP_CASTEiJ_G0031481.1 mouse_genomes_project 7 77163263 77164717 + Stard5 protein_coding retained_intron MGP_CASTEiJ_T0084953.1 MGP_CASTEiJ_G0031481.1 mouse_genomes_project 7 77163263 77184517 + MGP_CASTEiJ_P0084953 Stard5 protein_coding protein_coding MGP_CASTEiJ_T0084954.1 MGP_CASTEiJ_G0031481.1 mouse_genomes_project 7 77163279 77169467 + Stard5 protein_coding retained_intron MGP_CASTEiJ_T0084955.1 MGP_CASTEiJ_G0031481.1 mouse_genomes_project 7 77163802 77164601 + Stard5 protein_coding processed_transcript MGP_CASTEiJ_T0084171.1 MGP_CASTEiJ_G0031323.1 mouse_genomes_project 7 41327711 41343565 - MGP_CASTEiJ_P0084171 Mrgprx2 protein_coding protein_coding MGP_CASTEiJ_T0084172.1 MGP_CASTEiJ_G0031323.1 mouse_genomes_project 7 41329712 41340368 - MGP_CASTEiJ_P0084172 Mrgprx2 protein_coding protein_coding MGP_CASTEiJ_T0002232.1 MGP_CASTEiJ_G0002151.1 mouse_genomes_project 7 121031374 121032534 + TEC TEC MGP_CASTEiJ_T0010559.1 MGP_CASTEiJ_G0008747.1 mouse_genomes_project 7 37300490 37300563 + Mir707 miRNA miRNA MGP_CASTEiJ_T0005118.1 MGP_CASTEiJ_G0004358.1 mouse_genomes_project 7 91214983 91219409 - Gm44633 antisense antisense MGP_CASTEiJ_T0086096.1 MGP_CASTEiJ_G0031904.1 mouse_genomes_project 7 108978297 109264820 + MGP_CASTEiJ_P0086096 Spon1 protein_coding protein_coding MGP_CASTEiJ_T0086097.1 MGP_CASTEiJ_G0031904.1 mouse_genomes_project 7 108978473 109145890 + MGP_CASTEiJ_P0086097 Spon1 protein_coding protein_coding MGP_CASTEiJ_T0086098.1 MGP_CASTEiJ_G0031904.1 mouse_genomes_project 7 108978516 109315873 + MGP_CASTEiJ_P0086098 Spon1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0015302.1 MGP_CASTEiJ_G0013465.1 mouse_genomes_project 7 117761641 117762055 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084975.1 MGP_CASTEiJ_G0031487.1 mouse_genomes_project 7 77666980 77711175 - MGP_CASTEiJ_P0084975 Abhd17c protein_coding protein_coding MGP_CASTEiJ_T0084976.1 MGP_CASTEiJ_G0031487.1 mouse_genomes_project 7 77672046 77707089 - Abhd17c protein_coding processed_transcript MGP_CASTEiJ_T0083500.1 MGP_CASTEiJ_G0031139.1 mouse_genomes_project 7 29638462 29665312 - MGP_CASTEiJ_P0083500 Ccne1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083501.1 MGP_CASTEiJ_G0031139.1 mouse_genomes_project 7 29656082 29665619 - MGP_CASTEiJ_P0083501 Ccne1 protein_coding protein_coding MGP_CASTEiJ_T0083502.1 MGP_CASTEiJ_G0031139.1 mouse_genomes_project 7 29656766 29657602 - Ccne1 protein_coding retained_intron MGP_CASTEiJ_T0083503.1 MGP_CASTEiJ_G0031139.1 mouse_genomes_project 7 29656912 29657470 - Ccne1 protein_coding processed_transcript MGP_CASTEiJ_T0083504.1 MGP_CASTEiJ_G0031139.1 mouse_genomes_project 7 29658760 29664993 - MGP_CASTEiJ_P0083504 Ccne1 protein_coding protein_coding MGP_CASTEiJ_T0083505.1 MGP_CASTEiJ_G0031139.1 mouse_genomes_project 7 29661249 29665587 - MGP_CASTEiJ_P0083505 Ccne1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085647.1 MGP_CASTEiJ_G0031713.1 mouse_genomes_project 7 98751510 98754142 - MGP_CASTEiJ_P0085647 Olfr64 protein_coding protein_coding MGP_CASTEiJ_T0086266.1 MGP_CASTEiJ_G0031937.1 mouse_genomes_project 7 114967125 115001631 - MGP_CASTEiJ_P0086266 Pdilt protein_coding unknown_likely_coding MGP_CASTEiJ_T0087223.1 MGP_CASTEiJ_G0032121.1 mouse_genomes_project 7 126800756 126853537 + MGP_CASTEiJ_P0087223 Btbd16 protein_coding protein_coding MGP_CASTEiJ_T0002129.1 MGP_CASTEiJ_G0002049.1 mouse_genomes_project 7 13606151 13607388 + TEC TEC MGP_CASTEiJ_T0083168.1 MGP_CASTEiJ_G0031080.1 mouse_genomes_project 7 23386455 23411112 + protein_coding processed_transcript MGP_CASTEiJ_T0083169.1 MGP_CASTEiJ_G0031080.1 mouse_genomes_project 7 23405627 23411120 + MGP_CASTEiJ_P0083169 protein_coding protein_coding MGP_CASTEiJ_T0083170.1 MGP_CASTEiJ_G0031080.1 mouse_genomes_project 7 23405683 23411120 + MGP_CASTEiJ_P0083170 protein_coding protein_coding MGP_CASTEiJ_T0083171.1 MGP_CASTEiJ_G0031080.1 mouse_genomes_project 7 23405711 23411120 + MGP_CASTEiJ_P0083171 protein_coding protein_coding MGP_CASTEiJ_T0083172.1 MGP_CASTEiJ_G0031080.1 mouse_genomes_project 7 23407616 23411112 + MGP_CASTEiJ_P0083172 protein_coding protein_coding MGP_CASTEiJ_T0083845.1 MGP_CASTEiJ_G0031235.1 mouse_genomes_project 7 37604655 37606685 - MGP_CASTEiJ_P0083845 Rps11 protein_coding protein_coding MGP_CASTEiJ_T0083314.1 MGP_CASTEiJ_G0031105.1 mouse_genomes_project 7 24907669 24908853 + MGP_CASTEiJ_P0083314 Scgb1b24 protein_coding protein_coding MGP_CASTEiJ_T0100028.1 MGP_CASTEiJ_G0036941.1 mouse_genomes_project 7 99274633 99274733 - Gm27995 snRNA snRNA MGP_CASTEiJ_T0083848.1 MGP_CASTEiJ_G0031237.1 mouse_genomes_project 7 37614247 37621681 - MGP_CASTEiJ_P0083848 protein_coding protein_coding MGP_CASTEiJ_T0008574.1 MGP_CASTEiJ_G0006939.1 mouse_genomes_project 7 8077873 8093296 - 1810019N24Rik lincRNA lincRNA MGP_CASTEiJ_T0008575.1 MGP_CASTEiJ_G0006939.1 mouse_genomes_project 7 8079012 8079389 - 1810019N24Rik lincRNA lincRNA MGP_CASTEiJ_T0083132.1 MGP_CASTEiJ_G0031067.1 mouse_genomes_project 7 23213791 23216323 + MGP_CASTEiJ_P0083132 Igflr1 protein_coding protein_coding MGP_CASTEiJ_T0083133.1 MGP_CASTEiJ_G0031067.1 mouse_genomes_project 7 23214440 23216320 + MGP_CASTEiJ_P0083133 Igflr1 protein_coding protein_coding MGP_CASTEiJ_T0085211.1 MGP_CASTEiJ_G0031562.1 mouse_genomes_project 7 92585561 92587706 - MGP_CASTEiJ_P0085211 Omp protein_coding protein_coding MGP_CASTEiJ_T0082332.1 MGP_CASTEiJ_G0030878.1 mouse_genomes_project 7 16729849 16737723 + MGP_CASTEiJ_P0082332 Irgq protein_coding protein_coding MGP_CASTEiJ_T0081672.1 MGP_CASTEiJ_G0030662.1 mouse_genomes_project 7 3141490 3161403 + MGP_CASTEiJ_P0081672 Galp protein_coding protein_coding MGP_CASTEiJ_T0081673.1 MGP_CASTEiJ_G0030662.1 mouse_genomes_project 7 3146386 3156502 + Galp protein_coding processed_transcript MGP_CASTEiJ_T0010578.1 MGP_CASTEiJ_G0008766.1 mouse_genomes_project 7 54275363 54275423 - Mir344h-2 miRNA miRNA MGP_CASTEiJ_T0084428.1 MGP_CASTEiJ_G0031380.1 mouse_genomes_project 7 58646296 58663044 + Snrpa1 protein_coding processed_transcript MGP_CASTEiJ_T0084429.1 MGP_CASTEiJ_G0031380.1 mouse_genomes_project 7 58647588 58656884 + Snrpa1 protein_coding processed_transcript MGP_CASTEiJ_T0084430.1 MGP_CASTEiJ_G0031380.1 mouse_genomes_project 7 58647627 58663288 + MGP_CASTEiJ_P0084430 Snrpa1 protein_coding protein_coding MGP_CASTEiJ_T0084431.1 MGP_CASTEiJ_G0031380.1 mouse_genomes_project 7 58647823 58663077 + Snrpa1 protein_coding processed_transcript MGP_CASTEiJ_T0084432.1 MGP_CASTEiJ_G0031380.1 mouse_genomes_project 7 58647835 58663281 + MGP_CASTEiJ_P0084432 Snrpa1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084433.1 MGP_CASTEiJ_G0031380.1 mouse_genomes_project 7 58647855 58658954 + Snrpa1 protein_coding retained_intron MGP_CASTEiJ_T0084434.1 MGP_CASTEiJ_G0031380.1 mouse_genomes_project 7 58647894 58663071 + Snrpa1 protein_coding processed_transcript MGP_CASTEiJ_T0084435.1 MGP_CASTEiJ_G0031380.1 mouse_genomes_project 7 58648072 58649443 + Snrpa1 protein_coding processed_transcript MGP_CASTEiJ_T0084436.1 MGP_CASTEiJ_G0031380.1 mouse_genomes_project 7 58656196 58656881 + Snrpa1 protein_coding retained_intron MGP_CASTEiJ_T0102480.1 MGP_CASTEiJ_G0039205.1 mouse_genomes_project 7 9598195 9598697 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015207.1 MGP_CASTEiJ_G0013370.1 mouse_genomes_project 7 35679007 35679561 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083270.1 MGP_CASTEiJ_G0031096.1 mouse_genomes_project 7 23754884 23770751 + MGP_CASTEiJ_P0083270 Lgi4 protein_coding protein_coding MGP_CASTEiJ_T0083271.1 MGP_CASTEiJ_G0031096.1 mouse_genomes_project 7 23756111 23763639 + MGP_CASTEiJ_P0083271 Lgi4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083272.1 MGP_CASTEiJ_G0031096.1 mouse_genomes_project 7 23756149 23764045 + MGP_CASTEiJ_P0083272 Lgi4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083273.1 MGP_CASTEiJ_G0031096.1 mouse_genomes_project 7 23763519 23764564 + MGP_CASTEiJ_P0083273 Lgi4 protein_coding protein_coding MGP_CASTEiJ_T0084891.1 MGP_CASTEiJ_G0031462.1 mouse_genomes_project 7 74935772 74939882 - MGP_CASTEiJ_P0084891 BC048679 protein_coding protein_coding MGP_CASTEiJ_T0084892.1 MGP_CASTEiJ_G0031462.1 mouse_genomes_project 7 74935772 74939882 - MGP_CASTEiJ_P0084892 BC048679 protein_coding protein_coding MGP_CASTEiJ_T0085575.1 MGP_CASTEiJ_G0031644.1 mouse_genomes_project 7 97381903 97382857 + MGP_CASTEiJ_P0085575 Olfr552 protein_coding protein_coding MGP_CASTEiJ_T0081541.1 MGP_CASTEiJ_G0030616.1 mouse_genomes_project 7 1421136 1433630 - MGP_CASTEiJ_P0081541 Dnaaf3 protein_coding protein_coding MGP_CASTEiJ_T0084749.1 MGP_CASTEiJ_G0031442.1 mouse_genomes_project 7 73609971 73630360 + protein_coding retained_intron MGP_CASTEiJ_T0084750.1 MGP_CASTEiJ_G0031442.1 mouse_genomes_project 7 73609980 73620666 + protein_coding retained_intron MGP_CASTEiJ_T0084751.1 MGP_CASTEiJ_G0031442.1 mouse_genomes_project 7 73610019 73621571 + protein_coding retained_intron MGP_CASTEiJ_T0084752.1 MGP_CASTEiJ_G0031442.1 mouse_genomes_project 7 73610087 73634095 + MGP_CASTEiJ_P0084752 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084753.1 MGP_CASTEiJ_G0031442.1 mouse_genomes_project 7 73620999 73628493 + MGP_CASTEiJ_P0084753 protein_coding protein_coding MGP_CASTEiJ_T0084754.1 MGP_CASTEiJ_G0031442.1 mouse_genomes_project 7 73628457 73811200 + MGP_CASTEiJ_P0084754 protein_coding protein_coding MGP_CASTEiJ_T0084755.1 MGP_CASTEiJ_G0031442.1 mouse_genomes_project 7 73629918 73811403 + MGP_CASTEiJ_P0084755 protein_coding protein_coding MGP_CASTEiJ_T0083927.1 MGP_CASTEiJ_G0031254.1 mouse_genomes_project 7 37932631 37936109 + MGP_CASTEiJ_P0083927 Ntf5 protein_coding protein_coding MGP_CASTEiJ_T0005148.1 MGP_CASTEiJ_G0004377.1 mouse_genomes_project 7 119662341 119680597 - Gm27040 antisense antisense MGP_CASTEiJ_T0099995.1 MGP_CASTEiJ_G0036908.1 mouse_genomes_project 7 11370718 11370821 - Gm24708 snRNA snRNA MGP_CASTEiJ_T0081593.1 MGP_CASTEiJ_G0030626.1 mouse_genomes_project 7 1673386 1694643 - MGP_CASTEiJ_P0081593 Fam71e2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081594.1 MGP_CASTEiJ_G0030626.1 mouse_genomes_project 7 1673389 1694643 - MGP_CASTEiJ_P0081594 Fam71e2 protein_coding protein_coding MGP_CASTEiJ_T0015144.1 MGP_CASTEiJ_G0013307.1 mouse_genomes_project 7 12365070 12365537 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082114.1 MGP_CASTEiJ_G0030813.1 mouse_genomes_project 7 14031064 14046980 - MGP_CASTEiJ_P0082114 Vasp protein_coding protein_coding MGP_CASTEiJ_T0082115.1 MGP_CASTEiJ_G0030813.1 mouse_genomes_project 7 14032350 14032898 - Vasp protein_coding retained_intron MGP_CASTEiJ_T0082116.1 MGP_CASTEiJ_G0030813.1 mouse_genomes_project 7 14032483 14039829 - MGP_CASTEiJ_P0082116 Vasp protein_coding unknown_likely_coding MGP_CASTEiJ_T0082117.1 MGP_CASTEiJ_G0030813.1 mouse_genomes_project 7 14035418 14035834 - Vasp protein_coding processed_transcript MGP_CASTEiJ_T0082118.1 MGP_CASTEiJ_G0030813.1 mouse_genomes_project 7 14035619 14041576 - Vasp protein_coding processed_transcript MGP_CASTEiJ_T0082589.1 MGP_CASTEiJ_G0030941.1 mouse_genomes_project 7 19539269 19540672 - MGP_CASTEiJ_P0082589 Mia protein_coding protein_coding MGP_CASTEiJ_T0082590.1 MGP_CASTEiJ_G0030941.1 mouse_genomes_project 7 19539271 19540650 - Mia protein_coding retained_intron MGP_CASTEiJ_T0082591.1 MGP_CASTEiJ_G0030941.1 mouse_genomes_project 7 19539271 19540680 - MGP_CASTEiJ_P0082591 Mia protein_coding protein_coding MGP_CASTEiJ_T0082592.1 MGP_CASTEiJ_G0030941.1 mouse_genomes_project 7 19540016 19540519 - Mia protein_coding processed_transcript MGP_CASTEiJ_T0083096.1 MGP_CASTEiJ_G0031065.1 mouse_genomes_project 7 23210227 23211549 - MGP_CASTEiJ_P0083096 Psenen protein_coding protein_coding MGP_CASTEiJ_T0086369.1 MGP_CASTEiJ_G0031965.1 mouse_genomes_project 7 116593066 116635593 + MGP_CASTEiJ_P0086369 Mettl9 protein_coding protein_coding MGP_CASTEiJ_T0084281.1 MGP_CASTEiJ_G0031349.1 mouse_genomes_project 7 48859705 48878125 + MGP_CASTEiJ_P0084281 Herc2 protein_coding protein_coding MGP_CASTEiJ_T0084282.1 MGP_CASTEiJ_G0031349.1 mouse_genomes_project 7 48859762 49040851 + MGP_CASTEiJ_P0084282 Herc2 protein_coding protein_coding MGP_CASTEiJ_T0084283.1 MGP_CASTEiJ_G0031349.1 mouse_genomes_project 7 48859898 49040814 + MGP_CASTEiJ_P0084283 Herc2 protein_coding protein_coding MGP_CASTEiJ_T0084284.1 MGP_CASTEiJ_G0031349.1 mouse_genomes_project 7 48860273 48919744 + MGP_CASTEiJ_P0084284 Herc2 protein_coding protein_coding MGP_CASTEiJ_T0084285.1 MGP_CASTEiJ_G0031349.1 mouse_genomes_project 7 48860385 49040179 + MGP_CASTEiJ_P0084285 Herc2 protein_coding protein_coding MGP_CASTEiJ_T0084286.1 MGP_CASTEiJ_G0031349.1 mouse_genomes_project 7 48860455 48883079 + Herc2 protein_coding retained_intron MGP_CASTEiJ_T0084287.1 MGP_CASTEiJ_G0031349.1 mouse_genomes_project 7 48963788 48970584 + Herc2 protein_coding processed_transcript MGP_CASTEiJ_T0084288.1 MGP_CASTEiJ_G0031349.1 mouse_genomes_project 7 49029547 49040148 + MGP_CASTEiJ_P0084288 Herc2 protein_coding protein_coding MGP_CASTEiJ_T0083867.1 MGP_CASTEiJ_G0031244.1 mouse_genomes_project 7 37699624 37703937 - MGP_CASTEiJ_P0083867 Dkkl1 protein_coding protein_coding MGP_CASTEiJ_T0087618.1 MGP_CASTEiJ_G0032239.1 mouse_genomes_project 7 138089431 138120578 + MGP_CASTEiJ_P0087618 Ptdss2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087619.1 MGP_CASTEiJ_G0032239.1 mouse_genomes_project 7 138096631 138119101 + MGP_CASTEiJ_P0087619 Ptdss2 protein_coding protein_coding MGP_CASTEiJ_T0087620.1 MGP_CASTEiJ_G0032239.1 mouse_genomes_project 7 138096653 138118932 + MGP_CASTEiJ_P0087620 Ptdss2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087621.1 MGP_CASTEiJ_G0032239.1 mouse_genomes_project 7 138097660 138123163 + MGP_CASTEiJ_P0087621 Ptdss2 protein_coding protein_coding MGP_CASTEiJ_T0087622.1 MGP_CASTEiJ_G0032239.1 mouse_genomes_project 7 138097675 138120445 + Ptdss2 protein_coding retained_intron MGP_CASTEiJ_T0087623.1 MGP_CASTEiJ_G0032239.1 mouse_genomes_project 7 138097718 138109834 + Ptdss2 protein_coding processed_transcript MGP_CASTEiJ_T0087624.1 MGP_CASTEiJ_G0032239.1 mouse_genomes_project 7 138097730 138109334 + MGP_CASTEiJ_P0087624 Ptdss2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087625.1 MGP_CASTEiJ_G0032239.1 mouse_genomes_project 7 138098812 138113256 + MGP_CASTEiJ_P0087625 Ptdss2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087626.1 MGP_CASTEiJ_G0032239.1 mouse_genomes_project 7 138098927 138109863 + Ptdss2 protein_coding processed_transcript MGP_CASTEiJ_T0005169.1 MGP_CASTEiJ_G0004394.1 mouse_genomes_project 7 137763241 137771725 - C330022C24Rik antisense antisense MGP_CASTEiJ_T0081725.1 MGP_CASTEiJ_G0030689.1 mouse_genomes_project 7 5827634 5828594 - MGP_CASTEiJ_P0081725 Vmn1r68 protein_coding protein_coding MGP_CASTEiJ_T0083444.1 MGP_CASTEiJ_G0031131.1 mouse_genomes_project 7 26934389 26940960 - MGP_CASTEiJ_P0083444 Rgs9bp protein_coding protein_coding MGP_CASTEiJ_T0102568.1 MGP_CASTEiJ_G0039292.1 mouse_genomes_project 7 80055655 80100512 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0098640.1 MGP_CASTEiJ_G0035571.1 mouse_genomes_project 7 3485074 3485179 + n-R5s150 rRNA rRNA MGP_CASTEiJ_T0011357.1 MGP_CASTEiJ_G0009545.1 mouse_genomes_project 7 72586561 72586819 - Gm24224 misc_RNA misc_RNA MGP_CASTEiJ_T0015310.1 MGP_CASTEiJ_G0013473.1 mouse_genomes_project 7 121988409 121988657 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0086888.1 MGP_CASTEiJ_G0032064.1 mouse_genomes_project 7 123262933 123265994 - Zfp688 protein_coding retained_intron MGP_CASTEiJ_T0086889.1 MGP_CASTEiJ_G0032064.1 mouse_genomes_project 7 123262933 123266006 - MGP_CASTEiJ_P0086889 Zfp688 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086890.1 MGP_CASTEiJ_G0032064.1 mouse_genomes_project 7 123262933 123266001 - MGP_CASTEiJ_P0086890 Zfp688 protein_coding protein_coding MGP_CASTEiJ_T0086891.1 MGP_CASTEiJ_G0032064.1 mouse_genomes_project 7 123262935 123266035 - Zfp688 protein_coding retained_intron MGP_CASTEiJ_T0086892.1 MGP_CASTEiJ_G0032064.1 mouse_genomes_project 7 123263312 123265817 - MGP_CASTEiJ_P0086892 Zfp688 protein_coding protein_coding MGP_CASTEiJ_T0086893.1 MGP_CASTEiJ_G0032064.1 mouse_genomes_project 7 123263557 123265934 - MGP_CASTEiJ_P0086893 Zfp688 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085898.1 MGP_CASTEiJ_G0031850.1 mouse_genomes_project 7 103525537 103526482 + MGP_CASTEiJ_P0085898 Olfr507 protein_coding protein_coding MGP_CASTEiJ_T0081483.1 MGP_CASTEiJ_G0030607.1 mouse_genomes_project 7 1050230 1066485 - MGP_CASTEiJ_P0081483 1700027J19Rik protein_coding protein_coding MGP_CASTEiJ_T0081484.1 MGP_CASTEiJ_G0030607.1 mouse_genomes_project 7 1050521 1066164 - MGP_CASTEiJ_P0081484 1700027J19Rik protein_coding protein_coding MGP_CASTEiJ_T0081485.1 MGP_CASTEiJ_G0030607.1 mouse_genomes_project 7 1050746 1066067 - MGP_CASTEiJ_P0081485 1700027J19Rik protein_coding protein_coding MGP_CASTEiJ_T0086338.1 MGP_CASTEiJ_G0031957.1 mouse_genomes_project 7 116179219 116190196 - MGP_CASTEiJ_P0086338 Pdzd9 protein_coding protein_coding MGP_CASTEiJ_T0086339.1 MGP_CASTEiJ_G0031957.1 mouse_genomes_project 7 116179277 116190103 - Pdzd9 protein_coding processed_transcript MGP_CASTEiJ_T0002134.1 MGP_CASTEiJ_G0002054.1 mouse_genomes_project 7 25585484 25589204 - TEC TEC MGP_CASTEiJ_T0002220.1 MGP_CASTEiJ_G0002139.1 mouse_genomes_project 7 116842405 116843040 - TEC TEC MGP_CASTEiJ_T0002200.1 MGP_CASTEiJ_G0002119.1 mouse_genomes_project 7 72515163 72518138 + TEC TEC MGP_CASTEiJ_T0086170.1 MGP_CASTEiJ_G0031916.1 mouse_genomes_project 7 111643471 111645904 - MGP_CASTEiJ_P0086170 Rps13 protein_coding protein_coding MGP_CASTEiJ_T0086171.1 MGP_CASTEiJ_G0031916.1 mouse_genomes_project 7 111643476 111645842 - MGP_CASTEiJ_P0086171 Rps13 protein_coding protein_coding MGP_CASTEiJ_T0086172.1 MGP_CASTEiJ_G0031916.1 mouse_genomes_project 7 111643477 111644891 - Rps13 protein_coding retained_intron MGP_CASTEiJ_T0086173.1 MGP_CASTEiJ_G0031916.1 mouse_genomes_project 7 111643478 111645844 - Rps13 protein_coding retained_intron MGP_CASTEiJ_T0086174.1 MGP_CASTEiJ_G0031916.1 mouse_genomes_project 7 111643478 111645839 - Rps13 protein_coding retained_intron MGP_CASTEiJ_T0086175.1 MGP_CASTEiJ_G0031916.1 mouse_genomes_project 7 111643478 111645875 - MGP_CASTEiJ_P0086175 Rps13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086176.1 MGP_CASTEiJ_G0031916.1 mouse_genomes_project 7 111644011 111645826 - Rps13 protein_coding retained_intron MGP_CASTEiJ_T0086177.1 MGP_CASTEiJ_G0031916.1 mouse_genomes_project 7 111644744 111645831 - Rps13 protein_coding retained_intron MGP_CASTEiJ_T0002244.1 MGP_CASTEiJ_G0002163.1 mouse_genomes_project 7 124463175 124463785 + TEC TEC MGP_CASTEiJ_T0101238.1 MGP_CASTEiJ_G0038151.1 mouse_genomes_project 7 50830556 50830690 + Gm23911 snoRNA snoRNA MGP_CASTEiJ_T0087787.1 MGP_CASTEiJ_G0032265.1 mouse_genomes_project 7 138571137 138654044 + MGP_CASTEiJ_P0087787 Ap2a2 protein_coding protein_coding MGP_CASTEiJ_T0087788.1 MGP_CASTEiJ_G0032265.1 mouse_genomes_project 7 138571172 138621418 + Ap2a2 protein_coding retained_intron MGP_CASTEiJ_T0087789.1 MGP_CASTEiJ_G0032265.1 mouse_genomes_project 7 138571494 138617064 + MGP_CASTEiJ_P0087789 Ap2a2 protein_coding protein_coding MGP_CASTEiJ_T0083002.1 MGP_CASTEiJ_G0031044.1 mouse_genomes_project 7 22866083 22867160 + MGP_CASTEiJ_P0083002 Polr2i protein_coding protein_coding MGP_CASTEiJ_T0083003.1 MGP_CASTEiJ_G0031044.1 mouse_genomes_project 7 22866098 22867150 + MGP_CASTEiJ_P0083003 Polr2i protein_coding protein_coding MGP_CASTEiJ_T0083004.1 MGP_CASTEiJ_G0031044.1 mouse_genomes_project 7 22866098 22867151 + MGP_CASTEiJ_P0083004 Polr2i protein_coding protein_coding MGP_CASTEiJ_T0083005.1 MGP_CASTEiJ_G0031044.1 mouse_genomes_project 7 22866108 22867148 + Polr2i protein_coding retained_intron MGP_CASTEiJ_T0083006.1 MGP_CASTEiJ_G0031044.1 mouse_genomes_project 7 22866116 22867090 + Polr2i protein_coding retained_intron MGP_CASTEiJ_T0083007.1 MGP_CASTEiJ_G0031044.1 mouse_genomes_project 7 22866369 22867152 + Polr2i protein_coding processed_transcript MGP_CASTEiJ_T0083008.1 MGP_CASTEiJ_G0031044.1 mouse_genomes_project 7 22866698 22867147 + Polr2i protein_coding retained_intron MGP_CASTEiJ_T0085708.1 MGP_CASTEiJ_G0031754.1 mouse_genomes_project 7 99899881 99900832 + MGP_CASTEiJ_P0085708 Olfr665 protein_coding protein_coding MGP_CASTEiJ_T0083395.1 MGP_CASTEiJ_G0031122.1 mouse_genomes_project 7 26480955 26489965 + MGP_CASTEiJ_P0083395 Slc7a10 protein_coding protein_coding MGP_CASTEiJ_T0083396.1 MGP_CASTEiJ_G0031122.1 mouse_genomes_project 7 26480955 26495619 + MGP_CASTEiJ_P0083396 Slc7a10 protein_coding protein_coding MGP_CASTEiJ_T0083397.1 MGP_CASTEiJ_G0031122.1 mouse_genomes_project 7 26480991 26495427 + MGP_CASTEiJ_P0083397 Slc7a10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083398.1 MGP_CASTEiJ_G0031122.1 mouse_genomes_project 7 26481052 26492466 + MGP_CASTEiJ_P0083398 Slc7a10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083399.1 MGP_CASTEiJ_G0031122.1 mouse_genomes_project 7 26493429 26495408 + MGP_CASTEiJ_P0083399 Slc7a10 protein_coding protein_coding MGP_CASTEiJ_T0086605.1 MGP_CASTEiJ_G0032011.1 mouse_genomes_project 7 122303354 122327845 - MGP_CASTEiJ_P0086605 Eif3c protein_coding protein_coding MGP_CASTEiJ_T0086606.1 MGP_CASTEiJ_G0032011.1 mouse_genomes_project 7 122324163 122327792 - MGP_CASTEiJ_P0086606 Eif3c protein_coding protein_coding MGP_CASTEiJ_T0086607.1 MGP_CASTEiJ_G0032011.1 mouse_genomes_project 7 122324579 122327638 - MGP_CASTEiJ_P0086607 Eif3c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082905.1 MGP_CASTEiJ_G0031019.1 mouse_genomes_project 7 21842889 21846971 + MGP_CASTEiJ_P0082905 Ppp1r14a protein_coding protein_coding MGP_CASTEiJ_T0081950.1 MGP_CASTEiJ_G0030768.1 mouse_genomes_project 7 11551996 11569491 + MGP_CASTEiJ_P0081950 Slc1a5 protein_coding protein_coding MGP_CASTEiJ_T0081951.1 MGP_CASTEiJ_G0030768.1 mouse_genomes_project 7 11552024 11569491 + Slc1a5 protein_coding retained_intron MGP_CASTEiJ_T0081952.1 MGP_CASTEiJ_G0030768.1 mouse_genomes_project 7 11553054 11557804 + Slc1a5 protein_coding retained_intron MGP_CASTEiJ_T0081953.1 MGP_CASTEiJ_G0030768.1 mouse_genomes_project 7 11555393 11564844 + Slc1a5 protein_coding processed_transcript MGP_CASTEiJ_T0081954.1 MGP_CASTEiJ_G0030768.1 mouse_genomes_project 7 11556285 11557793 + Slc1a5 protein_coding retained_intron MGP_CASTEiJ_T0081955.1 MGP_CASTEiJ_G0030768.1 mouse_genomes_project 7 11556995 11564934 + Slc1a5 protein_coding retained_intron MGP_CASTEiJ_T0081956.1 MGP_CASTEiJ_G0030768.1 mouse_genomes_project 7 11564164 11567355 + Slc1a5 protein_coding processed_transcript MGP_CASTEiJ_T0081957.1 MGP_CASTEiJ_G0030768.1 mouse_genomes_project 7 11564314 11567119 + Slc1a5 protein_coding retained_intron MGP_CASTEiJ_T0101278.1 MGP_CASTEiJ_G0038191.1 mouse_genomes_project 7 120210365 120210508 + Gm23168 snoRNA snoRNA MGP_CASTEiJ_T0008626.1 MGP_CASTEiJ_G0006983.1 mouse_genomes_project 7 31514383 31523104 - lincRNA lincRNA MGP_CASTEiJ_T0008627.1 MGP_CASTEiJ_G0006983.1 mouse_genomes_project 7 31514387 31523121 - lincRNA lincRNA MGP_CASTEiJ_T0008628.1 MGP_CASTEiJ_G0006983.1 mouse_genomes_project 7 31514388 31523142 - lincRNA lincRNA MGP_CASTEiJ_T0005163.1 MGP_CASTEiJ_G0004390.1 mouse_genomes_project 7 128319930 128321061 + Gm15677 antisense antisense MGP_CASTEiJ_T0082178.1 MGP_CASTEiJ_G0030829.1 mouse_genomes_project 7 14341883 14348219 + MGP_CASTEiJ_P0082178 Nkpd1 protein_coding protein_coding MGP_CASTEiJ_T0083983.1 MGP_CASTEiJ_G0031266.1 mouse_genomes_project 7 38121480 38153407 + MGP_CASTEiJ_P0083983 Bcat2 protein_coding protein_coding MGP_CASTEiJ_T0083984.1 MGP_CASTEiJ_G0031266.1 mouse_genomes_project 7 38121677 38150550 + Bcat2 protein_coding retained_intron MGP_CASTEiJ_T0083985.1 MGP_CASTEiJ_G0031266.1 mouse_genomes_project 7 38121700 38153407 + MGP_CASTEiJ_P0083985 Bcat2 protein_coding protein_coding MGP_CASTEiJ_T0083986.1 MGP_CASTEiJ_G0031266.1 mouse_genomes_project 7 38122320 38153407 + MGP_CASTEiJ_P0083986 Bcat2 protein_coding protein_coding MGP_CASTEiJ_T0083987.1 MGP_CASTEiJ_G0031266.1 mouse_genomes_project 7 38124201 38153407 + MGP_CASTEiJ_P0083987 Bcat2 protein_coding protein_coding MGP_CASTEiJ_T0083988.1 MGP_CASTEiJ_G0031266.1 mouse_genomes_project 7 38126420 38148817 + MGP_CASTEiJ_P0083988 Bcat2 protein_coding protein_coding MGP_CASTEiJ_T0083989.1 MGP_CASTEiJ_G0031266.1 mouse_genomes_project 7 38126542 38148936 + Bcat2 protein_coding retained_intron MGP_CASTEiJ_T0102448.1 MGP_CASTEiJ_G0039173.1 mouse_genomes_project 7 5556480 5557376 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0083596.1 MGP_CASTEiJ_G0031166.1 mouse_genomes_project 7 35700935 35706012 - MGP_CASTEiJ_P0083596 Cd33 protein_coding protein_coding MGP_CASTEiJ_T0083597.1 MGP_CASTEiJ_G0031166.1 mouse_genomes_project 7 35701466 35705589 - MGP_CASTEiJ_P0083597 Cd33 protein_coding protein_coding MGP_CASTEiJ_T0083598.1 MGP_CASTEiJ_G0031166.1 mouse_genomes_project 7 35701802 35720252 - MGP_CASTEiJ_P0083598 Cd33 protein_coding protein_coding MGP_CASTEiJ_T0083599.1 MGP_CASTEiJ_G0031166.1 mouse_genomes_project 7 35702677 35720245 - MGP_CASTEiJ_P0083599 Cd33 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083600.1 MGP_CASTEiJ_G0031166.1 mouse_genomes_project 7 35703292 35705998 - Cd33 protein_coding retained_intron MGP_CASTEiJ_T0083601.1 MGP_CASTEiJ_G0031166.1 mouse_genomes_project 7 35704979 35705865 - Cd33 protein_coding processed_transcript MGP_CASTEiJ_T0088039.1 MGP_CASTEiJ_G0032312.1 mouse_genomes_project 7 142060804 142064668 + MGP_CASTEiJ_P0088039 Fgf4 protein_coding protein_coding MGP_CASTEiJ_T0085589.1 MGP_CASTEiJ_G0031657.1 mouse_genomes_project 7 97649174 97650125 + MGP_CASTEiJ_P0085589 Olfr568 protein_coding protein_coding MGP_CASTEiJ_T0086608.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122332785 122352567 - MGP_CASTEiJ_P0086608 Cln3 protein_coding protein_coding MGP_CASTEiJ_T0086609.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122332978 122349992 - MGP_CASTEiJ_P0086609 Cln3 protein_coding protein_coding MGP_CASTEiJ_T0086610.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122332978 122351025 - MGP_CASTEiJ_P0086610 Cln3 protein_coding protein_coding MGP_CASTEiJ_T0086611.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122333981 122349935 - MGP_CASTEiJ_P0086611 Cln3 protein_coding protein_coding MGP_CASTEiJ_T0086612.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122333985 122336783 - Cln3 protein_coding processed_transcript MGP_CASTEiJ_T0086613.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122334003 122334624 - Cln3 protein_coding processed_transcript MGP_CASTEiJ_T0086614.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122334017 122339549 - Cln3 protein_coding retained_intron MGP_CASTEiJ_T0086615.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122340045 122351052 - Cln3 protein_coding retained_intron MGP_CASTEiJ_T0086616.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122340908 122349971 - Cln3 protein_coding processed_transcript MGP_CASTEiJ_T0086617.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122340944 122350107 - MGP_CASTEiJ_P0086617 Cln3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086618.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122340960 122350965 - MGP_CASTEiJ_P0086618 Cln3 protein_coding protein_coding MGP_CASTEiJ_T0086619.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122341106 122350268 - MGP_CASTEiJ_P0086619 Cln3 protein_coding protein_coding MGP_CASTEiJ_T0086620.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122341926 122349859 - Cln3 protein_coding retained_intron MGP_CASTEiJ_T0086621.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122342485 122350061 - Cln3 protein_coding retained_intron MGP_CASTEiJ_T0086622.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122343167 122350087 - Cln3 protein_coding processed_transcript MGP_CASTEiJ_T0086623.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122343312 122350311 - MGP_CASTEiJ_P0086623 Cln3 protein_coding protein_coding MGP_CASTEiJ_T0086624.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122343315 122351323 - MGP_CASTEiJ_P0086624 Cln3 protein_coding protein_coding MGP_CASTEiJ_T0086625.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122343369 122350299 - MGP_CASTEiJ_P0086625 Cln3 protein_coding protein_coding MGP_CASTEiJ_T0086626.1 MGP_CASTEiJ_G0032012.1 mouse_genomes_project 7 122350066 122351536 - Cln3 protein_coding processed_transcript MGP_CASTEiJ_T0086547.1 MGP_CASTEiJ_G0032001.1 mouse_genomes_project 7 122109880 122115457 - MGP_CASTEiJ_P0086547 Lat protein_coding protein_coding MGP_CASTEiJ_T0086548.1 MGP_CASTEiJ_G0032001.1 mouse_genomes_project 7 122109883 122115450 - MGP_CASTEiJ_P0086548 Lat protein_coding protein_coding MGP_CASTEiJ_T0086549.1 MGP_CASTEiJ_G0032001.1 mouse_genomes_project 7 122109960 122110943 - Lat protein_coding retained_intron MGP_CASTEiJ_T0086550.1 MGP_CASTEiJ_G0032001.1 mouse_genomes_project 7 122113433 122115486 - Lat protein_coding retained_intron MGP_CASTEiJ_T0086551.1 MGP_CASTEiJ_G0032001.1 mouse_genomes_project 7 122114014 122115410 - MGP_CASTEiJ_P0086551 Lat protein_coding protein_coding MGP_CASTEiJ_T0086552.1 MGP_CASTEiJ_G0032001.1 mouse_genomes_project 7 122114572 122115256 - Lat protein_coding retained_intron MGP_CASTEiJ_T0005089.1 MGP_CASTEiJ_G0004338.1 mouse_genomes_project 7 71427128 71428251 + 4921513I08Rik antisense antisense MGP_CASTEiJ_T0084915.1 MGP_CASTEiJ_G0031471.1 mouse_genomes_project 7 75352263 75410273 - MGP_CASTEiJ_P0084915 Hdgfrp3 protein_coding protein_coding MGP_CASTEiJ_T0084916.1 MGP_CASTEiJ_G0031471.1 mouse_genomes_project 7 75362981 75410259 - MGP_CASTEiJ_P0084916 Hdgfrp3 protein_coding protein_coding MGP_CASTEiJ_T0084917.1 MGP_CASTEiJ_G0031471.1 mouse_genomes_project 7 75368847 75409824 - Hdgfrp3 protein_coding retained_intron MGP_CASTEiJ_T0085977.1 MGP_CASTEiJ_G0031879.1 mouse_genomes_project 7 105061260 105064591 - MGP_CASTEiJ_P0085977 protein_coding protein_coding MGP_CASTEiJ_T0087779.1 MGP_CASTEiJ_G0032264.1 mouse_genomes_project 7 138492506 138544543 - MGP_CASTEiJ_P0087779 Chid1 protein_coding protein_coding MGP_CASTEiJ_T0087780.1 MGP_CASTEiJ_G0032264.1 mouse_genomes_project 7 138492507 138544584 - MGP_CASTEiJ_P0087780 Chid1 protein_coding protein_coding MGP_CASTEiJ_T0087781.1 MGP_CASTEiJ_G0032264.1 mouse_genomes_project 7 138492507 138544584 - MGP_CASTEiJ_P0087781 Chid1 protein_coding protein_coding MGP_CASTEiJ_T0087782.1 MGP_CASTEiJ_G0032264.1 mouse_genomes_project 7 138492508 138544531 - MGP_CASTEiJ_P0087782 Chid1 protein_coding protein_coding MGP_CASTEiJ_T0087783.1 MGP_CASTEiJ_G0032264.1 mouse_genomes_project 7 138494771 138544546 - Chid1 protein_coding retained_intron MGP_CASTEiJ_T0087784.1 MGP_CASTEiJ_G0032264.1 mouse_genomes_project 7 138495422 138537679 - MGP_CASTEiJ_P0087784 Chid1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087785.1 MGP_CASTEiJ_G0032264.1 mouse_genomes_project 7 138518665 138544256 - MGP_CASTEiJ_P0087785 Chid1 protein_coding protein_coding MGP_CASTEiJ_T0087786.1 MGP_CASTEiJ_G0032264.1 mouse_genomes_project 7 138536650 138544559 - Chid1 protein_coding retained_intron MGP_CASTEiJ_T0101267.1 MGP_CASTEiJ_G0038180.1 mouse_genomes_project 7 105024231 105024364 + Gm25636 snoRNA snoRNA MGP_CASTEiJ_T0008586.1 MGP_CASTEiJ_G0006949.1 mouse_genomes_project 7 17095792 17872072 + lincRNA lincRNA MGP_CASTEiJ_T0008587.1 MGP_CASTEiJ_G0006949.1 mouse_genomes_project 7 17095792 17872073 + lincRNA lincRNA MGP_CASTEiJ_T0086885.1 MGP_CASTEiJ_G0032061.1 mouse_genomes_project 7 123224638 123234070 - MGP_CASTEiJ_P0086885 protein_coding protein_coding MGP_CASTEiJ_T0085389.1 MGP_CASTEiJ_G0031606.1 mouse_genomes_project 7 95591556 95619233 - MGP_CASTEiJ_P0085389 P2ry6 protein_coding protein_coding MGP_CASTEiJ_T0015242.1 MGP_CASTEiJ_G0013405.1 mouse_genomes_project 7 68466192 68466396 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082657.1 MGP_CASTEiJ_G0030955.1 mouse_genomes_project 7 19891964 19913895 + MGP_CASTEiJ_P0082657 Prx protein_coding protein_coding MGP_CASTEiJ_T0082658.1 MGP_CASTEiJ_G0030955.1 mouse_genomes_project 7 19891964 19913895 + MGP_CASTEiJ_P0082658 Prx protein_coding protein_coding MGP_CASTEiJ_T0082659.1 MGP_CASTEiJ_G0030955.1 mouse_genomes_project 7 19901327 19913715 + MGP_CASTEiJ_P0082659 Prx protein_coding protein_coding MGP_CASTEiJ_T0082660.1 MGP_CASTEiJ_G0030955.1 mouse_genomes_project 7 19901332 19913722 + MGP_CASTEiJ_P0082660 Prx protein_coding protein_coding MGP_CASTEiJ_T0085970.1 MGP_CASTEiJ_G0031877.1 mouse_genomes_project 7 104967987 104983943 - MGP_CASTEiJ_P0085970 Tmem41b protein_coding protein_coding MGP_CASTEiJ_T0085971.1 MGP_CASTEiJ_G0031877.1 mouse_genomes_project 7 104971283 104976658 - Tmem41b protein_coding retained_intron MGP_CASTEiJ_T0085972.1 MGP_CASTEiJ_G0031877.1 mouse_genomes_project 7 104973348 104984023 - MGP_CASTEiJ_P0085972 Tmem41b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085973.1 MGP_CASTEiJ_G0031877.1 mouse_genomes_project 7 104973348 104984136 - MGP_CASTEiJ_P0085973 Tmem41b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085974.1 MGP_CASTEiJ_G0031877.1 mouse_genomes_project 7 104973415 104984110 - MGP_CASTEiJ_P0085974 Tmem41b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085975.1 MGP_CASTEiJ_G0031877.1 mouse_genomes_project 7 104977715 104984120 - Tmem41b protein_coding retained_intron MGP_CASTEiJ_T0101233.1 MGP_CASTEiJ_G0038146.1 mouse_genomes_project 7 37608723 37608813 - Snord35a snoRNA snoRNA MGP_CASTEiJ_T0015321.1 MGP_CASTEiJ_G0013484.1 mouse_genomes_project 7 124243051 124243213 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015168.1 MGP_CASTEiJ_G0013331.1 mouse_genomes_project 7 19496315 19496562 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088050.1 MGP_CASTEiJ_G0032316.1 mouse_genomes_project 7 142439894 142511650 - MGP_CASTEiJ_P0088050 Tpcn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088051.1 MGP_CASTEiJ_G0032316.1 mouse_genomes_project 7 142480844 142511637 - MGP_CASTEiJ_P0088051 Tpcn2 protein_coding protein_coding MGP_CASTEiJ_T0082654.1 MGP_CASTEiJ_G0030953.1 mouse_genomes_project 7 19864679 19868326 + MGP_CASTEiJ_P0082654 Sertad3 protein_coding protein_coding MGP_CASTEiJ_T0017643.1 MGP_CASTEiJ_G0014993.1 mouse_genomes_project 7 66991397 67000902 + Gm38143 processed_transcript processed_transcript MGP_CASTEiJ_T0005013.1 MGP_CASTEiJ_G0004282.1 mouse_genomes_project 7 12760190 12868152 - antisense antisense MGP_CASTEiJ_T0101253.1 MGP_CASTEiJ_G0038166.1 mouse_genomes_project 7 75444865 75444990 + Gm25907 snoRNA snoRNA MGP_CASTEiJ_T0081863.1 MGP_CASTEiJ_G0030741.1 mouse_genomes_project 7 9534283 9535326 - MGP_CASTEiJ_P0081863 protein_coding protein_coding MGP_CASTEiJ_T0087122.1 MGP_CASTEiJ_G0032108.1 mouse_genomes_project 7 124169055 124172527 - BC017158 protein_coding retained_intron MGP_CASTEiJ_T0087123.1 MGP_CASTEiJ_G0032108.1 mouse_genomes_project 7 124169055 124196405 - MGP_CASTEiJ_P0087123 BC017158 protein_coding protein_coding MGP_CASTEiJ_T0087124.1 MGP_CASTEiJ_G0032108.1 mouse_genomes_project 7 124169795 124196343 - BC017158 protein_coding retained_intron MGP_CASTEiJ_T0087125.1 MGP_CASTEiJ_G0032108.1 mouse_genomes_project 7 124169795 124196344 - BC017158 protein_coding retained_intron MGP_CASTEiJ_T0087126.1 MGP_CASTEiJ_G0032108.1 mouse_genomes_project 7 124170014 124196330 - MGP_CASTEiJ_P0087126 BC017158 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087127.1 MGP_CASTEiJ_G0032108.1 mouse_genomes_project 7 124173642 124195809 - BC017158 protein_coding retained_intron MGP_CASTEiJ_T0087128.1 MGP_CASTEiJ_G0032108.1 mouse_genomes_project 7 124173976 124186161 - BC017158 protein_coding retained_intron MGP_CASTEiJ_T0087129.1 MGP_CASTEiJ_G0032108.1 mouse_genomes_project 7 124185419 124188083 - MGP_CASTEiJ_P0087129 BC017158 protein_coding protein_coding MGP_CASTEiJ_T0083602.1 MGP_CASTEiJ_G0031167.1 mouse_genomes_project 7 35737163 35751555 + MGP_CASTEiJ_P0083602 Zfp658 protein_coding protein_coding MGP_CASTEiJ_T0083603.1 MGP_CASTEiJ_G0031167.1 mouse_genomes_project 7 35739691 35751061 + MGP_CASTEiJ_P0083603 Zfp658 protein_coding protein_coding MGP_CASTEiJ_T0087677.1 MGP_CASTEiJ_G0032250.1 mouse_genomes_project 7 138275783 138307204 - MGP_CASTEiJ_P0087677 Deaf1 protein_coding protein_coding MGP_CASTEiJ_T0015190.1 MGP_CASTEiJ_G0013353.1 mouse_genomes_project 7 31253529 31253993 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084039.1 MGP_CASTEiJ_G0031283.1 mouse_genomes_project 7 38413749 38422023 - MGP_CASTEiJ_P0084039 Kcnj14 protein_coding protein_coding MGP_CASTEiJ_T0087533.1 MGP_CASTEiJ_G0032204.1 mouse_genomes_project 7 137310262 137311177 - MGP_CASTEiJ_P0087533 Olfr531 protein_coding protein_coding MGP_CASTEiJ_T0082186.1 MGP_CASTEiJ_G0030832.1 mouse_genomes_project 7 14412524 14415901 + MGP_CASTEiJ_P0082186 Zfp296 protein_coding protein_coding MGP_CASTEiJ_T0015250.1 MGP_CASTEiJ_G0013413.1 mouse_genomes_project 7 74561373 74561721 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098644.1 MGP_CASTEiJ_G0035575.1 mouse_genomes_project 7 26388747 26388866 + Gm22535 rRNA rRNA MGP_CASTEiJ_T0101660.1 MGP_CASTEiJ_G0038497.1 mouse_genomes_project 7 121896534 121903274 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101661.1 MGP_CASTEiJ_G0038497.1 mouse_genomes_project 7 121898167 121899123 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0008748.1 MGP_CASTEiJ_G0007067.1 mouse_genomes_project 7 95043797 95072946 - Gm10603 lincRNA lincRNA MGP_CASTEiJ_T0008749.1 MGP_CASTEiJ_G0007067.1 mouse_genomes_project 7 95057465 95065295 - Gm10603 lincRNA lincRNA MGP_CASTEiJ_T0008750.1 MGP_CASTEiJ_G0007067.1 mouse_genomes_project 7 95061637 95072951 - Gm10603 lincRNA lincRNA MGP_CASTEiJ_T0015194.1 MGP_CASTEiJ_G0013357.1 mouse_genomes_project 7 33063702 33063933 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0086994.1 MGP_CASTEiJ_G0032082.1 mouse_genomes_project 7 123665990 123669180 + Hsd3b7 protein_coding retained_intron MGP_CASTEiJ_T0086995.1 MGP_CASTEiJ_G0032082.1 mouse_genomes_project 7 123665990 123669180 + Hsd3b7 protein_coding retained_intron MGP_CASTEiJ_T0086996.1 MGP_CASTEiJ_G0032082.1 mouse_genomes_project 7 123665990 123669180 + MGP_CASTEiJ_P0086996 Hsd3b7 protein_coding protein_coding MGP_CASTEiJ_T0086997.1 MGP_CASTEiJ_G0032082.1 mouse_genomes_project 7 123666000 123669180 + MGP_CASTEiJ_P0086997 Hsd3b7 protein_coding protein_coding MGP_CASTEiJ_T0086998.1 MGP_CASTEiJ_G0032082.1 mouse_genomes_project 7 123666000 123667776 + MGP_CASTEiJ_P0086998 Hsd3b7 protein_coding protein_coding MGP_CASTEiJ_T0086999.1 MGP_CASTEiJ_G0032082.1 mouse_genomes_project 7 123666022 123667400 + MGP_CASTEiJ_P0086999 Hsd3b7 protein_coding protein_coding MGP_CASTEiJ_T0087000.1 MGP_CASTEiJ_G0032082.1 mouse_genomes_project 7 123666032 123667648 + MGP_CASTEiJ_P0087000 Hsd3b7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087001.1 MGP_CASTEiJ_G0032082.1 mouse_genomes_project 7 123666033 123667601 + Hsd3b7 protein_coding retained_intron MGP_CASTEiJ_T0087002.1 MGP_CASTEiJ_G0032082.1 mouse_genomes_project 7 123666044 123667491 + Hsd3b7 protein_coding retained_intron MGP_CASTEiJ_T0087003.1 MGP_CASTEiJ_G0032082.1 mouse_genomes_project 7 123666057 123667705 + Hsd3b7 protein_coding retained_intron MGP_CASTEiJ_T0087004.1 MGP_CASTEiJ_G0032082.1 mouse_genomes_project 7 123666066 123667416 + MGP_CASTEiJ_P0087004 Hsd3b7 protein_coding protein_coding MGP_CASTEiJ_T0087005.1 MGP_CASTEiJ_G0032082.1 mouse_genomes_project 7 123666299 123669180 + MGP_CASTEiJ_P0087005 Hsd3b7 protein_coding protein_coding MGP_CASTEiJ_T0087006.1 MGP_CASTEiJ_G0032082.1 mouse_genomes_project 7 123666324 123666902 + MGP_CASTEiJ_P0087006 Hsd3b7 protein_coding protein_coding MGP_CASTEiJ_T0015226.1 MGP_CASTEiJ_G0013389.1 mouse_genomes_project 7 49812152 49813545 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085492.1 MGP_CASTEiJ_G0031621.1 mouse_genomes_project 7 96635051 96643690 - MGP_CASTEiJ_P0085492 Lrrc51 protein_coding protein_coding MGP_CASTEiJ_T0085493.1 MGP_CASTEiJ_G0031621.1 mouse_genomes_project 7 96635056 96643252 - MGP_CASTEiJ_P0085493 Lrrc51 protein_coding protein_coding MGP_CASTEiJ_T0085494.1 MGP_CASTEiJ_G0031621.1 mouse_genomes_project 7 96635056 96643703 - MGP_CASTEiJ_P0085494 Lrrc51 protein_coding protein_coding MGP_CASTEiJ_T0085495.1 MGP_CASTEiJ_G0031621.1 mouse_genomes_project 7 96635057 96657056 - MGP_CASTEiJ_P0085495 Lrrc51 protein_coding protein_coding MGP_CASTEiJ_T0085496.1 MGP_CASTEiJ_G0031621.1 mouse_genomes_project 7 96635057 96656994 - MGP_CASTEiJ_P0085496 Lrrc51 protein_coding protein_coding MGP_CASTEiJ_T0085497.1 MGP_CASTEiJ_G0031621.1 mouse_genomes_project 7 96635057 96643677 - MGP_CASTEiJ_P0085497 Lrrc51 protein_coding protein_coding MGP_CASTEiJ_T0085498.1 MGP_CASTEiJ_G0031621.1 mouse_genomes_project 7 96635061 96643661 - MGP_CASTEiJ_P0085498 Lrrc51 protein_coding protein_coding MGP_CASTEiJ_T0085499.1 MGP_CASTEiJ_G0031621.1 mouse_genomes_project 7 96635068 96657083 - Lrrc51 protein_coding processed_transcript MGP_CASTEiJ_T0085500.1 MGP_CASTEiJ_G0031621.1 mouse_genomes_project 7 96635225 96656990 - MGP_CASTEiJ_P0085500 Lrrc51 protein_coding protein_coding MGP_CASTEiJ_T0085501.1 MGP_CASTEiJ_G0031621.1 mouse_genomes_project 7 96635241 96657018 - MGP_CASTEiJ_P0085501 Lrrc51 protein_coding protein_coding MGP_CASTEiJ_T0086403.1 MGP_CASTEiJ_G0031976.1 mouse_genomes_project 7 117708559 117725237 - MGP_CASTEiJ_P0086403 Ndufab1 protein_coding protein_coding MGP_CASTEiJ_T0086404.1 MGP_CASTEiJ_G0031976.1 mouse_genomes_project 7 117711625 117714957 - Ndufab1 protein_coding retained_intron MGP_CASTEiJ_T0086405.1 MGP_CASTEiJ_G0031976.1 mouse_genomes_project 7 117713220 117725202 - MGP_CASTEiJ_P0086405 Ndufab1 protein_coding protein_coding MGP_CASTEiJ_T0086406.1 MGP_CASTEiJ_G0031976.1 mouse_genomes_project 7 117713987 117716244 - Ndufab1 protein_coding retained_intron MGP_CASTEiJ_T0086407.1 MGP_CASTEiJ_G0031976.1 mouse_genomes_project 7 117714000 117725077 - MGP_CASTEiJ_P0086407 Ndufab1 protein_coding protein_coding MGP_CASTEiJ_T0086408.1 MGP_CASTEiJ_G0031976.1 mouse_genomes_project 7 117714002 117716718 - Ndufab1 protein_coding retained_intron MGP_CASTEiJ_T0086409.1 MGP_CASTEiJ_G0031976.1 mouse_genomes_project 7 117714695 117725076 - MGP_CASTEiJ_P0086409 Ndufab1 protein_coding protein_coding MGP_CASTEiJ_T0086410.1 MGP_CASTEiJ_G0031976.1 mouse_genomes_project 7 117716967 117724660 - Ndufab1 protein_coding processed_transcript MGP_CASTEiJ_T0086411.1 MGP_CASTEiJ_G0031976.1 mouse_genomes_project 7 117719432 117725179 - Ndufab1 protein_coding retained_intron MGP_CASTEiJ_T0083036.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22951935 22953816 + Syne4 protein_coding processed_transcript MGP_CASTEiJ_T0083037.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22951944 22957348 + MGP_CASTEiJ_P0083037 Syne4 protein_coding protein_coding MGP_CASTEiJ_T0083038.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22951999 22952867 + Syne4 protein_coding retained_intron MGP_CASTEiJ_T0083039.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22952008 22954250 + MGP_CASTEiJ_P0083039 Syne4 protein_coding protein_coding MGP_CASTEiJ_T0083040.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22952013 22954019 + Syne4 protein_coding retained_intron MGP_CASTEiJ_T0083041.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22952016 22954244 + MGP_CASTEiJ_P0083041 Syne4 protein_coding protein_coding MGP_CASTEiJ_T0083042.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22952044 22957348 + MGP_CASTEiJ_P0083042 Syne4 protein_coding protein_coding MGP_CASTEiJ_T0083043.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22952306 22953504 + Syne4 protein_coding retained_intron MGP_CASTEiJ_T0083044.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22952467 22955653 + Syne4 protein_coding retained_intron MGP_CASTEiJ_T0083045.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22953177 22954026 + Syne4 protein_coding retained_intron MGP_CASTEiJ_T0083046.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22953930 22957348 + Syne4 protein_coding retained_intron MGP_CASTEiJ_T0083047.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22954100 22957344 + MGP_CASTEiJ_P0083047 Syne4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083048.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22954145 22957347 + MGP_CASTEiJ_P0083048 Syne4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083049.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22954146 22957342 + MGP_CASTEiJ_P0083049 Syne4 protein_coding protein_coding MGP_CASTEiJ_T0083050.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22954178 22957346 + MGP_CASTEiJ_P0083050 Syne4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083051.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22955542 22957342 + Syne4 protein_coding retained_intron MGP_CASTEiJ_T0083052.1 MGP_CASTEiJ_G0031050.1 mouse_genomes_project 7 22956068 22957342 + Syne4 protein_coding retained_intron MGP_CASTEiJ_T0015188.1 MGP_CASTEiJ_G0013351.1 mouse_genomes_project 7 31253526 31253907 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002245.1 MGP_CASTEiJ_G0002164.1 mouse_genomes_project 7 124650967 124651958 - TEC TEC MGP_CASTEiJ_T0081701.1 MGP_CASTEiJ_G0030674.1 mouse_genomes_project 7 3442433 3443453 + MGP_CASTEiJ_P0081701 Olfr1346 protein_coding protein_coding MGP_CASTEiJ_T0082577.1 MGP_CASTEiJ_G0030938.1 mouse_genomes_project 7 19512066 19522275 - MGP_CASTEiJ_P0082577 Egln2 protein_coding protein_coding MGP_CASTEiJ_T0082578.1 MGP_CASTEiJ_G0030938.1 mouse_genomes_project 7 19512067 19514281 - Egln2 protein_coding processed_transcript MGP_CASTEiJ_T0082579.1 MGP_CASTEiJ_G0030938.1 mouse_genomes_project 7 19512396 19521879 - MGP_CASTEiJ_P0082579 Egln2 protein_coding protein_coding MGP_CASTEiJ_T0082580.1 MGP_CASTEiJ_G0030938.1 mouse_genomes_project 7 19520998 19521748 - Egln2 protein_coding processed_transcript MGP_CASTEiJ_T0086821.1 MGP_CASTEiJ_G0032045.1 mouse_genomes_project 7 122824529 122825759 - MGP_CASTEiJ_P0086821 Kif22 protein_coding protein_coding MGP_CASTEiJ_T0086822.1 MGP_CASTEiJ_G0032045.1 mouse_genomes_project 7 122824531 122839128 - MGP_CASTEiJ_P0086822 Kif22 protein_coding protein_coding MGP_CASTEiJ_T0086823.1 MGP_CASTEiJ_G0032045.1 mouse_genomes_project 7 122824532 122824917 - Kif22 protein_coding retained_intron MGP_CASTEiJ_T0086824.1 MGP_CASTEiJ_G0032045.1 mouse_genomes_project 7 122825907 122829500 - Kif22 protein_coding retained_intron MGP_CASTEiJ_T0086825.1 MGP_CASTEiJ_G0032045.1 mouse_genomes_project 7 122829030 122839066 - Kif22 protein_coding retained_intron MGP_CASTEiJ_T0086826.1 MGP_CASTEiJ_G0032045.1 mouse_genomes_project 7 122830360 122839063 - MGP_CASTEiJ_P0086826 Kif22 protein_coding protein_coding MGP_CASTEiJ_T0015335.1 MGP_CASTEiJ_G0013498.1 mouse_genomes_project 7 139375851 139376307 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082436.1 MGP_CASTEiJ_G0030901.1 mouse_genomes_project 7 17505159 17511203 + MGP_CASTEiJ_P0082436 Zfp526 protein_coding protein_coding MGP_CASTEiJ_T0008771.1 MGP_CASTEiJ_G0007079.1 mouse_genomes_project 7 112579067 112631724 + Gm45152 lincRNA lincRNA MGP_CASTEiJ_T0085648.1 MGP_CASTEiJ_G0031714.1 mouse_genomes_project 7 98767403 98768351 + MGP_CASTEiJ_P0085648 protein_coding protein_coding MGP_CASTEiJ_T0085625.1 MGP_CASTEiJ_G0031691.1 mouse_genomes_project 7 98363623 98364565 + MGP_CASTEiJ_P0085625 Olfr615 protein_coding protein_coding MGP_CASTEiJ_T0087851.1 MGP_CASTEiJ_G0032279.1 mouse_genomes_project 7 139550251 139584411 + MGP_CASTEiJ_P0087851 Lsp1 protein_coding protein_coding MGP_CASTEiJ_T0087852.1 MGP_CASTEiJ_G0032279.1 mouse_genomes_project 7 139550288 139584411 + MGP_CASTEiJ_P0087852 Lsp1 protein_coding protein_coding MGP_CASTEiJ_T0087853.1 MGP_CASTEiJ_G0032279.1 mouse_genomes_project 7 139550306 139584147 + MGP_CASTEiJ_P0087853 Lsp1 protein_coding protein_coding MGP_CASTEiJ_T0087854.1 MGP_CASTEiJ_G0032279.1 mouse_genomes_project 7 139561332 139584143 + MGP_CASTEiJ_P0087854 Lsp1 protein_coding protein_coding MGP_CASTEiJ_T0087855.1 MGP_CASTEiJ_G0032279.1 mouse_genomes_project 7 139561361 139577919 + Lsp1 protein_coding retained_intron MGP_CASTEiJ_T0087856.1 MGP_CASTEiJ_G0032279.1 mouse_genomes_project 7 139561640 139584144 + MGP_CASTEiJ_P0087856 Lsp1 protein_coding protein_coding MGP_CASTEiJ_T0087857.1 MGP_CASTEiJ_G0032279.1 mouse_genomes_project 7 139564485 139576043 + Lsp1 protein_coding processed_transcript MGP_CASTEiJ_T0087858.1 MGP_CASTEiJ_G0032279.1 mouse_genomes_project 7 139566501 139584411 + Lsp1 protein_coding processed_transcript MGP_CASTEiJ_T0087859.1 MGP_CASTEiJ_G0032279.1 mouse_genomes_project 7 139572782 139579521 + Lsp1 protein_coding processed_transcript MGP_CASTEiJ_T0087860.1 MGP_CASTEiJ_G0032279.1 mouse_genomes_project 7 139572927 139576019 + Lsp1 protein_coding processed_transcript MGP_CASTEiJ_T0087861.1 MGP_CASTEiJ_G0032279.1 mouse_genomes_project 7 139578554 139579962 + Lsp1 protein_coding retained_intron MGP_CASTEiJ_T0087862.1 MGP_CASTEiJ_G0032279.1 mouse_genomes_project 7 139579350 139584061 + Lsp1 protein_coding retained_intron MGP_CASTEiJ_T0005102.1 MGP_CASTEiJ_G0004347.1 mouse_genomes_project 7 73973547 73981926 + Gm15880 antisense antisense MGP_CASTEiJ_T0084399.1 MGP_CASTEiJ_G0031375.1 mouse_genomes_project 7 57821410 57897889 - MGP_CASTEiJ_P0084399 Tjp1 protein_coding protein_coding MGP_CASTEiJ_T0084400.1 MGP_CASTEiJ_G0031375.1 mouse_genomes_project 7 57821953 57897665 - MGP_CASTEiJ_P0084400 Tjp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084401.1 MGP_CASTEiJ_G0031375.1 mouse_genomes_project 7 57821953 57897665 - MGP_CASTEiJ_P0084401 Tjp1 protein_coding protein_coding MGP_CASTEiJ_T0084402.1 MGP_CASTEiJ_G0031375.1 mouse_genomes_project 7 57822749 57827555 - Tjp1 protein_coding processed_transcript MGP_CASTEiJ_T0084403.1 MGP_CASTEiJ_G0031375.1 mouse_genomes_project 7 57865628 57868203 - Tjp1 protein_coding retained_intron MGP_CASTEiJ_T0084404.1 MGP_CASTEiJ_G0031375.1 mouse_genomes_project 7 57868022 58060949 - MGP_CASTEiJ_P0084404 Tjp1 protein_coding protein_coding MGP_CASTEiJ_T0084405.1 MGP_CASTEiJ_G0031375.1 mouse_genomes_project 7 57983860 58061051 - MGP_CASTEiJ_P0084405 Tjp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084406.1 MGP_CASTEiJ_G0031375.1 mouse_genomes_project 7 58047439 58061034 - Tjp1 protein_coding retained_intron MGP_CASTEiJ_T0002229.1 MGP_CASTEiJ_G0002148.1 mouse_genomes_project 7 118368163 118369784 - TEC TEC MGP_CASTEiJ_T0102546.1 MGP_CASTEiJ_G0039270.1 mouse_genomes_project 7 41427638 41428530 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0081542.1 MGP_CASTEiJ_G0030617.1 mouse_genomes_project 7 1440821 1449771 - MGP_CASTEiJ_P0081542 Syt5 protein_coding protein_coding MGP_CASTEiJ_T0081543.1 MGP_CASTEiJ_G0030617.1 mouse_genomes_project 7 1448891 1450747 - MGP_CASTEiJ_P0081543 Syt5 protein_coding protein_coding MGP_CASTEiJ_T0081544.1 MGP_CASTEiJ_G0030617.1 mouse_genomes_project 7 1449496 1450177 - MGP_CASTEiJ_P0081544 Syt5 protein_coding protein_coding MGP_CASTEiJ_T0081454.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1016935 1023086 + Ttyh1 protein_coding processed_transcript MGP_CASTEiJ_T0081455.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1017057 1033945 + Ttyh1 protein_coding retained_intron MGP_CASTEiJ_T0081456.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1017057 1034332 + MGP_CASTEiJ_P0081456 Ttyh1 protein_coding protein_coding MGP_CASTEiJ_T0081457.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1017060 1035675 + MGP_CASTEiJ_P0081457 Ttyh1 protein_coding protein_coding MGP_CASTEiJ_T0081458.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1017083 1023117 + Ttyh1 protein_coding processed_transcript MGP_CASTEiJ_T0081459.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1017112 1034318 + MGP_CASTEiJ_P0081459 Ttyh1 protein_coding protein_coding MGP_CASTEiJ_T0081460.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1017115 1023126 + MGP_CASTEiJ_P0081460 Ttyh1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081461.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1017149 1025766 + MGP_CASTEiJ_P0081461 Ttyh1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081462.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1017281 1034315 + MGP_CASTEiJ_P0081462 Ttyh1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081463.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1017747 1023058 + Ttyh1 protein_coding processed_transcript MGP_CASTEiJ_T0081464.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1019663 1034392 + Ttyh1 protein_coding retained_intron MGP_CASTEiJ_T0081465.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1021987 1033235 + MGP_CASTEiJ_P0081465 Ttyh1 protein_coding protein_coding MGP_CASTEiJ_T0081466.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1023164 1032413 + Ttyh1 protein_coding processed_transcript MGP_CASTEiJ_T0081467.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1025726 1027636 + Ttyh1 protein_coding retained_intron MGP_CASTEiJ_T0081468.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1026746 1032191 + Ttyh1 protein_coding retained_intron MGP_CASTEiJ_T0081469.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1028184 1030884 + Ttyh1 protein_coding retained_intron MGP_CASTEiJ_T0081470.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1028700 1031028 + Ttyh1 protein_coding retained_intron MGP_CASTEiJ_T0081471.1 MGP_CASTEiJ_G0030604.1 mouse_genomes_project 7 1032023 1032967 + Ttyh1 protein_coding retained_intron MGP_CASTEiJ_T0015162.1 MGP_CASTEiJ_G0013325.1 mouse_genomes_project 7 17898411 17898979 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100042.1 MGP_CASTEiJ_G0036955.1 mouse_genomes_project 7 122325484 122325592 - Gm24596 snRNA snRNA MGP_CASTEiJ_T0010524.1 MGP_CASTEiJ_G0008712.1 mouse_genomes_project 7 110417 110496 + Mir291b miRNA miRNA MGP_CASTEiJ_T0008640.1 MGP_CASTEiJ_G0006992.1 mouse_genomes_project 7 36071963 36073281 - Gm44707 lincRNA lincRNA MGP_CASTEiJ_T0008625.1 MGP_CASTEiJ_G0006982.1 mouse_genomes_project 7 31394038 31394584 - lincRNA lincRNA MGP_CASTEiJ_T0005061.1 MGP_CASTEiJ_G0004319.1 mouse_genomes_project 7 26895960 26897529 + B230322F03Rik antisense antisense MGP_CASTEiJ_T0010527.1 MGP_CASTEiJ_G0008715.1 mouse_genomes_project 7 111673 111742 + Mir295 miRNA miRNA MGP_CASTEiJ_T0084977.1 MGP_CASTEiJ_G0031488.1 mouse_genomes_project 7 77799723 77935465 - MGP_CASTEiJ_P0084977 Arnt2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084978.1 MGP_CASTEiJ_G0031488.1 mouse_genomes_project 7 77822072 77990212 - MGP_CASTEiJ_P0084978 Arnt2 protein_coding protein_coding MGP_CASTEiJ_T0083097.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211665 23213719 + protein_coding processed_transcript MGP_CASTEiJ_T0083098.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211671 23213490 + protein_coding processed_transcript MGP_CASTEiJ_T0083099.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211683 23212846 + MGP_CASTEiJ_P0083099 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083100.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211689 23213727 + MGP_CASTEiJ_P0083100 protein_coding protein_coding MGP_CASTEiJ_T0083101.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211690 23212972 + protein_coding retained_intron MGP_CASTEiJ_T0083102.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211690 23213716 + MGP_CASTEiJ_P0083102 protein_coding protein_coding MGP_CASTEiJ_T0083103.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211693 23212976 + protein_coding retained_intron MGP_CASTEiJ_T0083104.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211694 23212973 + protein_coding retained_intron MGP_CASTEiJ_T0083105.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211700 23213525 + MGP_CASTEiJ_P0083105 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083106.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211702 23213163 + MGP_CASTEiJ_P0083106 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083107.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211703 23213529 + MGP_CASTEiJ_P0083107 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083108.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211704 23212424 + protein_coding retained_intron MGP_CASTEiJ_T0083109.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211706 23213609 + protein_coding retained_intron MGP_CASTEiJ_T0083110.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211708 23213103 + MGP_CASTEiJ_P0083110 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083111.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211710 23212866 + protein_coding retained_intron MGP_CASTEiJ_T0083112.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211713 23212423 + protein_coding retained_intron MGP_CASTEiJ_T0083113.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211714 23213726 + protein_coding processed_transcript MGP_CASTEiJ_T0083114.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211714 23216321 + MGP_CASTEiJ_P0083114 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083115.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211720 23213544 + MGP_CASTEiJ_P0083115 protein_coding protein_coding MGP_CASTEiJ_T0083116.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211720 23213544 + MGP_CASTEiJ_P0083116 protein_coding protein_coding MGP_CASTEiJ_T0083117.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211720 23213544 + MGP_CASTEiJ_P0083117 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083118.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211720 23213544 + MGP_CASTEiJ_P0083118 protein_coding protein_coding MGP_CASTEiJ_T0083119.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211720 23213544 + MGP_CASTEiJ_P0083119 protein_coding protein_coding MGP_CASTEiJ_T0083120.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211722 23213724 + protein_coding processed_transcript MGP_CASTEiJ_T0083121.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211722 23212913 + MGP_CASTEiJ_P0083121 protein_coding protein_coding MGP_CASTEiJ_T0083122.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211723 23215760 + protein_coding retained_intron MGP_CASTEiJ_T0083123.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211724 23212841 + protein_coding retained_intron MGP_CASTEiJ_T0083124.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211731 23213537 + protein_coding processed_transcript MGP_CASTEiJ_T0083125.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211742 23213729 + protein_coding retained_intron MGP_CASTEiJ_T0083126.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211757 23212720 + protein_coding retained_intron MGP_CASTEiJ_T0083127.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211759 23213544 + MGP_CASTEiJ_P0083127 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083128.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23211761 23213544 + MGP_CASTEiJ_P0083128 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083129.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23212190 23212972 + protein_coding retained_intron MGP_CASTEiJ_T0083130.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23212235 23212643 + protein_coding processed_transcript MGP_CASTEiJ_T0083131.1 MGP_CASTEiJ_G0031066.1 mouse_genomes_project 7 23212243 23213544 + MGP_CASTEiJ_P0083131 protein_coding protein_coding MGP_CASTEiJ_T0085533.1 MGP_CASTEiJ_G0031630.1 mouse_genomes_project 7 96850002 96856905 - MGP_CASTEiJ_P0085533 Chrna10 protein_coding protein_coding MGP_CASTEiJ_T0008803.1 MGP_CASTEiJ_G0007099.1 mouse_genomes_project 7 123862100 123864404 - Gm26690 lincRNA lincRNA MGP_CASTEiJ_T0083819.1 MGP_CASTEiJ_G0031221.1 mouse_genomes_project 7 37358192 37387419 - MGP_CASTEiJ_P0083819 Ap2a1 protein_coding protein_coding MGP_CASTEiJ_T0083820.1 MGP_CASTEiJ_G0031221.1 mouse_genomes_project 7 37358192 37387419 - MGP_CASTEiJ_P0083820 Ap2a1 protein_coding protein_coding MGP_CASTEiJ_T0083821.1 MGP_CASTEiJ_G0031221.1 mouse_genomes_project 7 37358192 37387419 - MGP_CASTEiJ_P0083821 Ap2a1 protein_coding protein_coding MGP_CASTEiJ_T0083822.1 MGP_CASTEiJ_G0031221.1 mouse_genomes_project 7 37358192 37387419 - MGP_CASTEiJ_P0083822 Ap2a1 protein_coding protein_coding MGP_CASTEiJ_T0015320.1 MGP_CASTEiJ_G0013483.1 mouse_genomes_project 7 124043408 124044307 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002241.1 MGP_CASTEiJ_G0002160.1 mouse_genomes_project 7 123677513 123678823 - TEC TEC MGP_CASTEiJ_T0083312.1 MGP_CASTEiJ_G0031103.1 mouse_genomes_project 7 24059819 24062906 - MGP_CASTEiJ_P0083312 Scgb2b3 protein_coding protein_coding MGP_CASTEiJ_T0082555.1 MGP_CASTEiJ_G0030929.1 mouse_genomes_project 7 18707495 18760747 + MGP_CASTEiJ_P0082555 Nlrp4a protein_coding protein_coding MGP_CASTEiJ_T0082556.1 MGP_CASTEiJ_G0030929.1 mouse_genomes_project 7 18707999 18759775 + MGP_CASTEiJ_P0082556 Nlrp4a protein_coding protein_coding MGP_CASTEiJ_T0082557.1 MGP_CASTEiJ_G0030929.1 mouse_genomes_project 7 18708031 18731588 + Nlrp4a protein_coding processed_transcript MGP_CASTEiJ_T0082558.1 MGP_CASTEiJ_G0030929.1 mouse_genomes_project 7 18708031 18746071 + MGP_CASTEiJ_P0082558 Nlrp4a protein_coding protein_coding MGP_CASTEiJ_T0008789.1 MGP_CASTEiJ_G0007093.1 mouse_genomes_project 7 122622046 122631587 + Gm44854 lincRNA lincRNA MGP_CASTEiJ_T0005110.1 MGP_CASTEiJ_G0004353.1 mouse_genomes_project 7 86993374 87000665 - 4632427E13Rik antisense antisense MGP_CASTEiJ_T0005111.1 MGP_CASTEiJ_G0004353.1 mouse_genomes_project 7 86996843 87000674 - 4632427E13Rik antisense antisense MGP_CASTEiJ_T0005112.1 MGP_CASTEiJ_G0004353.1 mouse_genomes_project 7 86996866 87000674 - 4632427E13Rik antisense antisense MGP_CASTEiJ_T0005113.1 MGP_CASTEiJ_G0004353.1 mouse_genomes_project 7 86999911 87000665 - 4632427E13Rik antisense antisense MGP_CASTEiJ_T0002172.1 MGP_CASTEiJ_G0002092.1 mouse_genomes_project 7 56852725 56853325 + TEC TEC MGP_CASTEiJ_T0085620.1 MGP_CASTEiJ_G0031686.1 mouse_genomes_project 7 98276407 98277358 + MGP_CASTEiJ_P0085620 Olfr608 protein_coding protein_coding MGP_CASTEiJ_T0085387.1 MGP_CASTEiJ_G0031605.1 mouse_genomes_project 7 95519856 95585999 - MGP_CASTEiJ_P0085387 Arhgef17 protein_coding protein_coding MGP_CASTEiJ_T0085388.1 MGP_CASTEiJ_G0031605.1 mouse_genomes_project 7 95519886 95544590 - MGP_CASTEiJ_P0085388 Arhgef17 protein_coding unknown_likely_coding MGP_CASTEiJ_T0102536.1 MGP_CASTEiJ_G0039260.1 mouse_genomes_project 7 40764157 40792667 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0085699.1 MGP_CASTEiJ_G0031745.1 mouse_genomes_project 7 99551966 99552893 - MGP_CASTEiJ_P0085699 Olfr655 protein_coding protein_coding MGP_CASTEiJ_T0084684.1 MGP_CASTEiJ_G0031424.1 mouse_genomes_project 7 72957084 72974910 - MGP_CASTEiJ_P0084684 Kif7 protein_coding protein_coding MGP_CASTEiJ_T0084685.1 MGP_CASTEiJ_G0031424.1 mouse_genomes_project 7 72957085 72973180 - MGP_CASTEiJ_P0084685 Kif7 protein_coding protein_coding MGP_CASTEiJ_T0084686.1 MGP_CASTEiJ_G0031424.1 mouse_genomes_project 7 72957085 72973180 - MGP_CASTEiJ_P0084686 Kif7 protein_coding protein_coding MGP_CASTEiJ_T0084687.1 MGP_CASTEiJ_G0031424.1 mouse_genomes_project 7 72957504 72974859 - MGP_CASTEiJ_P0084687 Kif7 protein_coding protein_coding MGP_CASTEiJ_T0085298.1 MGP_CASTEiJ_G0031586.1 mouse_genomes_project 7 94402746 94467039 + MGP_CASTEiJ_P0085298 Xrra1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085299.1 MGP_CASTEiJ_G0031586.1 mouse_genomes_project 7 94402878 94467035 + MGP_CASTEiJ_P0085299 Xrra1 protein_coding protein_coding MGP_CASTEiJ_T0015184.1 MGP_CASTEiJ_G0013347.1 mouse_genomes_project 7 25727024 25727671 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084906.1 MGP_CASTEiJ_G0031469.1 mouse_genomes_project 7 75326450 75326712 - MGP_CASTEiJ_P0084906 Gm10160 protein_coding protein_coding MGP_CASTEiJ_T0085390.1 MGP_CASTEiJ_G0031607.1 mouse_genomes_project 7 95653987 95669583 - MGP_CASTEiJ_P0085390 P2ry2 protein_coding protein_coding MGP_CASTEiJ_T0085391.1 MGP_CASTEiJ_G0031607.1 mouse_genomes_project 7 95654641 95669568 - MGP_CASTEiJ_P0085391 P2ry2 protein_coding protein_coding MGP_CASTEiJ_T0008606.1 MGP_CASTEiJ_G0006966.1 mouse_genomes_project 7 25907527 25918662 - Gm12756 lincRNA lincRNA MGP_CASTEiJ_T0015211.1 MGP_CASTEiJ_G0013374.1 mouse_genomes_project 7 36697981 36698959 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084778.1 MGP_CASTEiJ_G0031445.1 mouse_genomes_project 7 73667233 73682808 - Man2a2 protein_coding retained_intron MGP_CASTEiJ_T0084779.1 MGP_CASTEiJ_G0031445.1 mouse_genomes_project 7 73667233 73693766 - MGP_CASTEiJ_P0084779 Man2a2 protein_coding protein_coding MGP_CASTEiJ_T0084780.1 MGP_CASTEiJ_G0031445.1 mouse_genomes_project 7 73669368 73679040 - MGP_CASTEiJ_P0084780 Man2a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084781.1 MGP_CASTEiJ_G0031445.1 mouse_genomes_project 7 73674204 73683018 - Man2a2 protein_coding retained_intron MGP_CASTEiJ_T0084782.1 MGP_CASTEiJ_G0031445.1 mouse_genomes_project 7 73678428 73679206 - Man2a2 protein_coding retained_intron MGP_CASTEiJ_T0084783.1 MGP_CASTEiJ_G0031445.1 mouse_genomes_project 7 73679011 73682846 - MGP_CASTEiJ_P0084783 Man2a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084784.1 MGP_CASTEiJ_G0031445.1 mouse_genomes_project 7 73679664 73693252 - MGP_CASTEiJ_P0084784 Man2a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084785.1 MGP_CASTEiJ_G0031445.1 mouse_genomes_project 7 73679826 73693517 - Man2a2 protein_coding retained_intron MGP_CASTEiJ_T0084786.1 MGP_CASTEiJ_G0031445.1 mouse_genomes_project 7 73682011 73683006 - Man2a2 protein_coding retained_intron MGP_CASTEiJ_T0084787.1 MGP_CASTEiJ_G0031445.1 mouse_genomes_project 7 73692025 73693249 - MGP_CASTEiJ_P0084787 Man2a2 protein_coding protein_coding MGP_CASTEiJ_T0084788.1 MGP_CASTEiJ_G0031445.1 mouse_genomes_project 7 73692053 73693473 - MGP_CASTEiJ_P0084788 Man2a2 protein_coding protein_coding MGP_CASTEiJ_T0008717.1 MGP_CASTEiJ_G0007048.1 mouse_genomes_project 7 73613329 73615201 - 6330403N20Rik lincRNA lincRNA MGP_CASTEiJ_T0008569.1 MGP_CASTEiJ_G0006934.1 mouse_genomes_project 7 288465 301161 - Gm44257 lincRNA lincRNA MGP_CASTEiJ_T0085854.1 MGP_CASTEiJ_G0031813.1 mouse_genomes_project 7 101921619 101923346 - MGP_CASTEiJ_P0085854 Olfr2 protein_coding protein_coding MGP_CASTEiJ_T0085564.1 MGP_CASTEiJ_G0031634.1 mouse_genomes_project 7 97020340 97203060 + MGP_CASTEiJ_P0085564 Stim1 protein_coding protein_coding MGP_CASTEiJ_T0085632.1 MGP_CASTEiJ_G0031698.1 mouse_genomes_project 7 98454302 98455256 - MGP_CASTEiJ_P0085632 Olfr622 protein_coding protein_coding MGP_CASTEiJ_T0010581.1 MGP_CASTEiJ_G0008769.1 mouse_genomes_project 7 54392914 54393008 - Mir344c miRNA miRNA MGP_CASTEiJ_T0102460.1 MGP_CASTEiJ_G0039185.1 mouse_genomes_project 7 7126902 7127742 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015205.1 MGP_CASTEiJ_G0013368.1 mouse_genomes_project 7 35553625 35553890 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083612.1 MGP_CASTEiJ_G0031171.1 mouse_genomes_project 7 35833961 35846353 - MGP_CASTEiJ_P0083612 Siglece protein_coding unknown_likely_coding MGP_CASTEiJ_T0083613.1 MGP_CASTEiJ_G0031171.1 mouse_genomes_project 7 35835585 35846382 - MGP_CASTEiJ_P0083613 Siglece protein_coding protein_coding MGP_CASTEiJ_T0083614.1 MGP_CASTEiJ_G0031171.1 mouse_genomes_project 7 35836049 35845577 - MGP_CASTEiJ_P0083614 Siglece protein_coding protein_coding MGP_CASTEiJ_T0086364.1 MGP_CASTEiJ_G0031963.1 mouse_genomes_project 7 116536033 116570349 + MGP_CASTEiJ_P0086364 Mfsd13b protein_coding protein_coding MGP_CASTEiJ_T0086365.1 MGP_CASTEiJ_G0031963.1 mouse_genomes_project 7 116536049 116544970 + MGP_CASTEiJ_P0086365 Mfsd13b protein_coding protein_coding MGP_CASTEiJ_T0086366.1 MGP_CASTEiJ_G0031963.1 mouse_genomes_project 7 116536052 116542562 + MGP_CASTEiJ_P0086366 Mfsd13b protein_coding protein_coding MGP_CASTEiJ_T0086367.1 MGP_CASTEiJ_G0031963.1 mouse_genomes_project 7 116545324 116570349 + MGP_CASTEiJ_P0086367 Mfsd13b protein_coding protein_coding MGP_CASTEiJ_T0017688.1 MGP_CASTEiJ_G0015018.1 mouse_genomes_project 7 139636351 139651969 - Nctc1 processed_transcript antisense MGP_CASTEiJ_T0017689.1 MGP_CASTEiJ_G0015018.1 mouse_genomes_project 7 139647071 139651969 - Nctc1 processed_transcript retained_intron MGP_CASTEiJ_T0002188.1 MGP_CASTEiJ_G0002107.1 mouse_genomes_project 7 68589133 68590529 + TEC TEC MGP_CASTEiJ_T0084051.1 MGP_CASTEiJ_G0031288.1 mouse_genomes_project 7 38498648 38522660 + MGP_CASTEiJ_P0084051 Tmem143 protein_coding protein_coding MGP_CASTEiJ_T0084052.1 MGP_CASTEiJ_G0031288.1 mouse_genomes_project 7 38498788 38522660 + MGP_CASTEiJ_P0084052 Tmem143 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084053.1 MGP_CASTEiJ_G0031288.1 mouse_genomes_project 7 38498808 38522656 + MGP_CASTEiJ_P0084053 Tmem143 protein_coding protein_coding MGP_CASTEiJ_T0084054.1 MGP_CASTEiJ_G0031288.1 mouse_genomes_project 7 38499127 38503849 + Tmem143 protein_coding retained_intron MGP_CASTEiJ_T0084055.1 MGP_CASTEiJ_G0031288.1 mouse_genomes_project 7 38499130 38513479 + Tmem143 protein_coding processed_transcript MGP_CASTEiJ_T0084056.1 MGP_CASTEiJ_G0031288.1 mouse_genomes_project 7 38499136 38512721 + Tmem143 protein_coding retained_intron MGP_CASTEiJ_T0084057.1 MGP_CASTEiJ_G0031288.1 mouse_genomes_project 7 38499136 38514784 + MGP_CASTEiJ_P0084057 Tmem143 protein_coding protein_coding MGP_CASTEiJ_T0084058.1 MGP_CASTEiJ_G0031288.1 mouse_genomes_project 7 38514121 38514726 + Tmem143 protein_coding processed_transcript MGP_CASTEiJ_T0084059.1 MGP_CASTEiJ_G0031288.1 mouse_genomes_project 7 38521243 38522222 + Tmem143 protein_coding processed_transcript MGP_CASTEiJ_T0085923.1 MGP_CASTEiJ_G0031865.1 mouse_genomes_project 7 104077583 104111793 - MGP_CASTEiJ_P0085923 Lmo1 protein_coding protein_coding MGP_CASTEiJ_T0086766.1 MGP_CASTEiJ_G0032034.1 mouse_genomes_project 7 122671191 122676727 - MGP_CASTEiJ_P0086766 Tmem219 protein_coding protein_coding MGP_CASTEiJ_T0086767.1 MGP_CASTEiJ_G0032034.1 mouse_genomes_project 7 122671238 122682385 - MGP_CASTEiJ_P0086767 Tmem219 protein_coding protein_coding MGP_CASTEiJ_T0086768.1 MGP_CASTEiJ_G0032034.1 mouse_genomes_project 7 122671240 122674276 - Tmem219 protein_coding retained_intron MGP_CASTEiJ_T0086769.1 MGP_CASTEiJ_G0032034.1 mouse_genomes_project 7 122671240 122683237 - MGP_CASTEiJ_P0086769 Tmem219 protein_coding protein_coding MGP_CASTEiJ_T0086770.1 MGP_CASTEiJ_G0032034.1 mouse_genomes_project 7 122671240 122683214 - MGP_CASTEiJ_P0086770 Tmem219 protein_coding protein_coding MGP_CASTEiJ_T0086771.1 MGP_CASTEiJ_G0032034.1 mouse_genomes_project 7 122671240 122710600 - MGP_CASTEiJ_P0086771 Tmem219 protein_coding protein_coding MGP_CASTEiJ_T0086772.1 MGP_CASTEiJ_G0032034.1 mouse_genomes_project 7 122671242 122681839 - MGP_CASTEiJ_P0086772 Tmem219 protein_coding protein_coding MGP_CASTEiJ_T0086773.1 MGP_CASTEiJ_G0032034.1 mouse_genomes_project 7 122673996 122710602 - MGP_CASTEiJ_P0086773 Tmem219 protein_coding protein_coding MGP_CASTEiJ_T0086774.1 MGP_CASTEiJ_G0032034.1 mouse_genomes_project 7 122675951 122683242 - Tmem219 protein_coding retained_intron MGP_CASTEiJ_T0086775.1 MGP_CASTEiJ_G0032034.1 mouse_genomes_project 7 122676573 122710585 - MGP_CASTEiJ_P0086775 Tmem219 protein_coding protein_coding MGP_CASTEiJ_T0084558.1 MGP_CASTEiJ_G0031404.1 mouse_genomes_project 7 67345372 67644858 - MGP_CASTEiJ_P0084558 Slco3a1 protein_coding protein_coding MGP_CASTEiJ_T0084559.1 MGP_CASTEiJ_G0031404.1 mouse_genomes_project 7 67345813 67644850 - MGP_CASTEiJ_P0084559 Slco3a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084560.1 MGP_CASTEiJ_G0031404.1 mouse_genomes_project 7 67351813 67644839 - MGP_CASTEiJ_P0084560 Slco3a1 protein_coding protein_coding MGP_CASTEiJ_T0084561.1 MGP_CASTEiJ_G0031404.1 mouse_genomes_project 7 67365312 67645005 - MGP_CASTEiJ_P0084561 Slco3a1 protein_coding protein_coding MGP_CASTEiJ_T0084562.1 MGP_CASTEiJ_G0031404.1 mouse_genomes_project 7 67400555 67421358 - Slco3a1 protein_coding retained_intron MGP_CASTEiJ_T0084563.1 MGP_CASTEiJ_G0031404.1 mouse_genomes_project 7 67420912 67644699 - MGP_CASTEiJ_P0084563 Slco3a1 protein_coding protein_coding MGP_CASTEiJ_T0084564.1 MGP_CASTEiJ_G0031404.1 mouse_genomes_project 7 67435664 67589948 - Slco3a1 protein_coding retained_intron MGP_CASTEiJ_T0084565.1 MGP_CASTEiJ_G0031404.1 mouse_genomes_project 7 67589851 67642819 - MGP_CASTEiJ_P0084565 Slco3a1 protein_coding protein_coding MGP_CASTEiJ_T0084566.1 MGP_CASTEiJ_G0031404.1 mouse_genomes_project 7 67589998 67618971 - Slco3a1 protein_coding processed_transcript MGP_CASTEiJ_T0087538.1 MGP_CASTEiJ_G0032209.1 mouse_genomes_project 7 137512364 137513200 + MGP_CASTEiJ_P0087538 protein_coding protein_coding MGP_CASTEiJ_T0100052.1 MGP_CASTEiJ_G0036965.1 mouse_genomes_project 7 139098717 139098824 - Gm25416 snRNA snRNA MGP_CASTEiJ_T0085596.1 MGP_CASTEiJ_G0031664.1 mouse_genomes_project 7 97756046 97756985 + MGP_CASTEiJ_P0085596 Olfr576 protein_coding protein_coding MGP_CASTEiJ_T0085597.1 MGP_CASTEiJ_G0031664.1 mouse_genomes_project 7 97756046 97767247 + MGP_CASTEiJ_P0085597 Olfr576 protein_coding protein_coding MGP_CASTEiJ_T0015119.1 MGP_CASTEiJ_G0013282.1 mouse_genomes_project 7 1546194 1549775 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0086975.1 MGP_CASTEiJ_G0032077.1 mouse_genomes_project 7 123580364 123590093 - MGP_CASTEiJ_P0086975 Ctf2 protein_coding protein_coding MGP_CASTEiJ_T0084987.1 MGP_CASTEiJ_G0031493.1 mouse_genomes_project 7 78526008 78544894 - MGP_CASTEiJ_P0084987 Vmn2r65 protein_coding protein_coding MGP_CASTEiJ_T0082775.1 MGP_CASTEiJ_G0030989.1 mouse_genomes_project 7 20946972 20954512 + MGP_CASTEiJ_P0082775 Lrfn1 protein_coding protein_coding MGP_CASTEiJ_T0082776.1 MGP_CASTEiJ_G0030989.1 mouse_genomes_project 7 20947140 20958717 + MGP_CASTEiJ_P0082776 Lrfn1 protein_coding protein_coding MGP_CASTEiJ_T0082777.1 MGP_CASTEiJ_G0030989.1 mouse_genomes_project 7 20947230 20955634 + Lrfn1 protein_coding retained_intron MGP_CASTEiJ_T0082778.1 MGP_CASTEiJ_G0030989.1 mouse_genomes_project 7 20947405 20964078 + MGP_CASTEiJ_P0082778 Lrfn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082779.1 MGP_CASTEiJ_G0030989.1 mouse_genomes_project 7 20953884 20964789 + MGP_CASTEiJ_P0082779 Lrfn1 protein_coding protein_coding MGP_CASTEiJ_T0082780.1 MGP_CASTEiJ_G0030989.1 mouse_genomes_project 7 20953884 20958652 + MGP_CASTEiJ_P0082780 Lrfn1 protein_coding protein_coding MGP_CASTEiJ_T0002240.1 MGP_CASTEiJ_G0002159.1 mouse_genomes_project 7 123665480 123668140 - TEC TEC MGP_CASTEiJ_T0010613.1 MGP_CASTEiJ_G0008801.1 mouse_genomes_project 7 123340180 123340317 + Mir7060 miRNA miRNA MGP_CASTEiJ_T0082252.1 MGP_CASTEiJ_G0030854.1 mouse_genomes_project 7 15766545 15773965 + MGP_CASTEiJ_P0082252 protein_coding protein_coding MGP_CASTEiJ_T0085300.1 MGP_CASTEiJ_G0031587.1 mouse_genomes_project 7 94469466 94539786 - MGP_CASTEiJ_P0085300 Rnf169 protein_coding protein_coding MGP_CASTEiJ_T0085301.1 MGP_CASTEiJ_G0031587.1 mouse_genomes_project 7 94485490 94519628 - Rnf169 protein_coding processed_transcript MGP_CASTEiJ_T0010569.1 MGP_CASTEiJ_G0008757.1 mouse_genomes_project 7 54201182 54201262 - Gm23962 miRNA miRNA MGP_CASTEiJ_T0082019.1 MGP_CASTEiJ_G0030783.1 mouse_genomes_project 7 11977293 11990767 + MGP_CASTEiJ_P0082019 Psg29 protein_coding protein_coding MGP_CASTEiJ_T0084175.1 MGP_CASTEiJ_G0031326.1 mouse_genomes_project 7 41599521 41637925 + MGP_CASTEiJ_P0084175 Zdhhc13 protein_coding protein_coding MGP_CASTEiJ_T0084176.1 MGP_CASTEiJ_G0031326.1 mouse_genomes_project 7 41599544 41635201 + MGP_CASTEiJ_P0084176 Zdhhc13 protein_coding protein_coding MGP_CASTEiJ_T0084177.1 MGP_CASTEiJ_G0031326.1 mouse_genomes_project 7 41599550 41613262 + Zdhhc13 protein_coding processed_transcript MGP_CASTEiJ_T0086220.1 MGP_CASTEiJ_G0031926.1 mouse_genomes_project 7 113962638 114014453 - MGP_CASTEiJ_P0086220 Tmc7 protein_coding protein_coding MGP_CASTEiJ_T0086221.1 MGP_CASTEiJ_G0031926.1 mouse_genomes_project 7 113973162 114014403 - Tmc7 protein_coding retained_intron MGP_CASTEiJ_T0086222.1 MGP_CASTEiJ_G0031926.1 mouse_genomes_project 7 113993139 113995523 - Tmc7 protein_coding retained_intron MGP_CASTEiJ_T0086223.1 MGP_CASTEiJ_G0031926.1 mouse_genomes_project 7 114001680 114014426 - Tmc7 protein_coding processed_transcript MGP_CASTEiJ_T0008682.1 MGP_CASTEiJ_G0007025.1 mouse_genomes_project 7 66162508 66162887 - Gm28746 lincRNA lincRNA MGP_CASTEiJ_T0087487.1 MGP_CASTEiJ_G0032185.1 mouse_genomes_project 7 136891267 136919237 - MGP_CASTEiJ_P0087487 Tubgcp2 protein_coding protein_coding MGP_CASTEiJ_T0008718.1 MGP_CASTEiJ_G0007049.1 mouse_genomes_project 7 74964831 74972003 + 2900076A07Rik lincRNA lincRNA MGP_CASTEiJ_T0008719.1 MGP_CASTEiJ_G0007049.1 mouse_genomes_project 7 74964844 74972593 + 2900076A07Rik lincRNA lincRNA MGP_CASTEiJ_T0008720.1 MGP_CASTEiJ_G0007049.1 mouse_genomes_project 7 74964852 74973952 + 2900076A07Rik lincRNA lincRNA MGP_CASTEiJ_T0008721.1 MGP_CASTEiJ_G0007049.1 mouse_genomes_project 7 74964852 74971887 + 2900076A07Rik lincRNA lincRNA MGP_CASTEiJ_T0008722.1 MGP_CASTEiJ_G0007049.1 mouse_genomes_project 7 74964887 74971689 + 2900076A07Rik lincRNA lincRNA MGP_CASTEiJ_T0008723.1 MGP_CASTEiJ_G0007049.1 mouse_genomes_project 7 74970833 74971960 + 2900076A07Rik lincRNA lincRNA MGP_CASTEiJ_T0008724.1 MGP_CASTEiJ_G0007049.1 mouse_genomes_project 7 74971210 74972039 + 2900076A07Rik lincRNA lincRNA MGP_CASTEiJ_T0008725.1 MGP_CASTEiJ_G0007049.1 mouse_genomes_project 7 74971225 74973956 + 2900076A07Rik lincRNA lincRNA MGP_CASTEiJ_T0083296.1 MGP_CASTEiJ_G0031099.1 mouse_genomes_project 7 23822336 23835202 - MGP_CASTEiJ_P0083296 Scn1b protein_coding protein_coding MGP_CASTEiJ_T0083622.1 MGP_CASTEiJ_G0031176.1 mouse_genomes_project 7 35982674 35988965 + MGP_CASTEiJ_P0083622 Klk11 protein_coding protein_coding MGP_CASTEiJ_T0083623.1 MGP_CASTEiJ_G0031176.1 mouse_genomes_project 7 35986053 35988655 + Klk11 protein_coding retained_intron MGP_CASTEiJ_T0083624.1 MGP_CASTEiJ_G0031176.1 mouse_genomes_project 7 35986053 35988960 + MGP_CASTEiJ_P0083624 Klk11 protein_coding protein_coding MGP_CASTEiJ_T0083625.1 MGP_CASTEiJ_G0031176.1 mouse_genomes_project 7 35986204 35988762 + Klk11 protein_coding processed_transcript MGP_CASTEiJ_T0083626.1 MGP_CASTEiJ_G0031176.1 mouse_genomes_project 7 35986204 35988762 + Klk11 protein_coding processed_transcript MGP_CASTEiJ_T0082326.1 MGP_CASTEiJ_G0030876.1 mouse_genomes_project 7 16671880 16701890 + MGP_CASTEiJ_P0082326 Cadm4 protein_coding protein_coding MGP_CASTEiJ_T0082327.1 MGP_CASTEiJ_G0030876.1 mouse_genomes_project 7 16697273 16700142 + Cadm4 protein_coding processed_transcript MGP_CASTEiJ_T0082630.1 MGP_CASTEiJ_G0030949.1 mouse_genomes_project 7 19719203 19735457 - MGP_CASTEiJ_P0082630 Shkbp1 protein_coding protein_coding MGP_CASTEiJ_T0082631.1 MGP_CASTEiJ_G0030949.1 mouse_genomes_project 7 19719207 19735181 - Shkbp1 protein_coding retained_intron MGP_CASTEiJ_T0082632.1 MGP_CASTEiJ_G0030949.1 mouse_genomes_project 7 19719207 19735392 - Shkbp1 protein_coding retained_intron MGP_CASTEiJ_T0082633.1 MGP_CASTEiJ_G0030949.1 mouse_genomes_project 7 19719208 19722768 - Shkbp1 protein_coding processed_transcript MGP_CASTEiJ_T0082634.1 MGP_CASTEiJ_G0030949.1 mouse_genomes_project 7 19719482 19719992 - Shkbp1 protein_coding retained_intron MGP_CASTEiJ_T0082635.1 MGP_CASTEiJ_G0030949.1 mouse_genomes_project 7 19720232 19725763 - Shkbp1 protein_coding processed_transcript MGP_CASTEiJ_T0082636.1 MGP_CASTEiJ_G0030949.1 mouse_genomes_project 7 19722144 19724774 - Shkbp1 protein_coding retained_intron MGP_CASTEiJ_T0082637.1 MGP_CASTEiJ_G0030949.1 mouse_genomes_project 7 19725435 19727904 - Shkbp1 protein_coding retained_intron MGP_CASTEiJ_T0082638.1 MGP_CASTEiJ_G0030949.1 mouse_genomes_project 7 19731129 19735197 - Shkbp1 protein_coding retained_intron MGP_CASTEiJ_T0082639.1 MGP_CASTEiJ_G0030949.1 mouse_genomes_project 7 19731170 19735360 - Shkbp1 protein_coding processed_transcript MGP_CASTEiJ_T0082641.1 MGP_CASTEiJ_G0030949.1 mouse_genomes_project 7 19733528 19735209 - Shkbp1 protein_coding retained_intron MGP_CASTEiJ_T0082347.1 MGP_CASTEiJ_G0030881.1 mouse_genomes_project 7 16801831 16805366 - MGP_CASTEiJ_P0082347 Zfp575 protein_coding protein_coding MGP_CASTEiJ_T0087904.1 MGP_CASTEiJ_G0032284.1 mouse_genomes_project 7 139789112 139790142 - MGP_CASTEiJ_P0087904 Ins2 protein_coding protein_coding MGP_CASTEiJ_T0087905.1 MGP_CASTEiJ_G0032284.1 mouse_genomes_project 7 139789112 139810332 - MGP_CASTEiJ_P0087905 Ins2 protein_coding protein_coding MGP_CASTEiJ_T0087906.1 MGP_CASTEiJ_G0032284.1 mouse_genomes_project 7 139789115 139790149 - MGP_CASTEiJ_P0087906 Ins2 protein_coding protein_coding MGP_CASTEiJ_T0087907.1 MGP_CASTEiJ_G0032284.1 mouse_genomes_project 7 139789115 139790183 - MGP_CASTEiJ_P0087907 Ins2 protein_coding protein_coding MGP_CASTEiJ_T0087908.1 MGP_CASTEiJ_G0032284.1 mouse_genomes_project 7 139789115 139790155 - MGP_CASTEiJ_P0087908 Ins2 protein_coding protein_coding MGP_CASTEiJ_T0087909.1 MGP_CASTEiJ_G0032284.1 mouse_genomes_project 7 139789117 139790174 - MGP_CASTEiJ_P0087909 Ins2 protein_coding protein_coding MGP_CASTEiJ_T0087910.1 MGP_CASTEiJ_G0032284.1 mouse_genomes_project 7 139789165 139790037 - MGP_CASTEiJ_P0087910 Ins2 protein_coding protein_coding MGP_CASTEiJ_T0087911.1 MGP_CASTEiJ_G0032284.1 mouse_genomes_project 7 139789169 139789990 - MGP_CASTEiJ_P0087911 Ins2 protein_coding protein_coding MGP_CASTEiJ_T0085587.1 MGP_CASTEiJ_G0031655.1 mouse_genomes_project 7 97561803 97562874 + MGP_CASTEiJ_P0085587 Olfr561 protein_coding protein_coding MGP_CASTEiJ_T0087525.1 MGP_CASTEiJ_G0032198.1 mouse_genomes_project 7 137130277 137144788 + MGP_CASTEiJ_P0087525 Cd163l1 protein_coding protein_coding MGP_CASTEiJ_T0084174.1 MGP_CASTEiJ_G0031325.1 mouse_genomes_project 7 41474776 41475785 - MGP_CASTEiJ_P0084174 Mrgprb3 protein_coding protein_coding MGP_CASTEiJ_T0011373.1 MGP_CASTEiJ_G0009561.1 mouse_genomes_project 7 140396057 140396281 + Gm27539 misc_RNA misc_RNA MGP_CASTEiJ_T0083435.1 MGP_CASTEiJ_G0031129.1 mouse_genomes_project 7 26802261 26876122 - MGP_CASTEiJ_P0083435 protein_coding protein_coding MGP_CASTEiJ_T0083436.1 MGP_CASTEiJ_G0031129.1 mouse_genomes_project 7 26804351 26876123 - MGP_CASTEiJ_P0083436 protein_coding protein_coding MGP_CASTEiJ_T0083437.1 MGP_CASTEiJ_G0031129.1 mouse_genomes_project 7 26830833 26876278 - MGP_CASTEiJ_P0083437 protein_coding protein_coding MGP_CASTEiJ_T0083438.1 MGP_CASTEiJ_G0031129.1 mouse_genomes_project 7 26830836 26876330 - MGP_CASTEiJ_P0083438 protein_coding protein_coding MGP_CASTEiJ_T0083439.1 MGP_CASTEiJ_G0031129.1 mouse_genomes_project 7 26830865 26841997 - MGP_CASTEiJ_P0083439 protein_coding protein_coding MGP_CASTEiJ_T0083440.1 MGP_CASTEiJ_G0031129.1 mouse_genomes_project 7 26845767 26876278 - MGP_CASTEiJ_P0083440 protein_coding protein_coding MGP_CASTEiJ_T0083607.1 MGP_CASTEiJ_G0031169.1 mouse_genomes_project 7 35787084 35799400 + MGP_CASTEiJ_P0083607 Zfp819 protein_coding protein_coding MGP_CASTEiJ_T0083608.1 MGP_CASTEiJ_G0031169.1 mouse_genomes_project 7 35787124 35793850 + MGP_CASTEiJ_P0083608 Zfp819 protein_coding protein_coding MGP_CASTEiJ_T0083609.1 MGP_CASTEiJ_G0031169.1 mouse_genomes_project 7 35787140 35799469 + MGP_CASTEiJ_P0083609 Zfp819 protein_coding protein_coding MGP_CASTEiJ_T0083610.1 MGP_CASTEiJ_G0031169.1 mouse_genomes_project 7 35789782 35799095 + MGP_CASTEiJ_P0083610 Zfp819 protein_coding protein_coding MGP_CASTEiJ_T0102485.1 MGP_CASTEiJ_G0039210.1 mouse_genomes_project 7 10118819 10119074 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0083938.1 MGP_CASTEiJ_G0031258.1 mouse_genomes_project 7 37996873 37999856 - MGP_CASTEiJ_P0083938 Ftl1-ps1 protein_coding protein_coding MGP_CASTEiJ_T0083939.1 MGP_CASTEiJ_G0031258.1 mouse_genomes_project 7 37996874 37997956 - Ftl1-ps1 protein_coding processed_transcript MGP_CASTEiJ_T0083940.1 MGP_CASTEiJ_G0031258.1 mouse_genomes_project 7 37996874 37998578 - Ftl1-ps1 protein_coding processed_transcript MGP_CASTEiJ_T0083941.1 MGP_CASTEiJ_G0031258.1 mouse_genomes_project 7 37996894 37998619 - Ftl1-ps1 protein_coding retained_intron MGP_CASTEiJ_T0084937.1 MGP_CASTEiJ_G0031476.1 mouse_genomes_project 7 76156935 76286926 + MGP_CASTEiJ_P0084937 Efl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084938.1 MGP_CASTEiJ_G0031476.1 mouse_genomes_project 7 76157025 76182624 + MGP_CASTEiJ_P0084938 Efl1 protein_coding protein_coding MGP_CASTEiJ_T0084939.1 MGP_CASTEiJ_G0031476.1 mouse_genomes_project 7 76157025 76286946 + MGP_CASTEiJ_P0084939 Efl1 protein_coding protein_coding MGP_CASTEiJ_T0084940.1 MGP_CASTEiJ_G0031476.1 mouse_genomes_project 7 76157040 76207719 + Efl1 protein_coding retained_intron MGP_CASTEiJ_T0084941.1 MGP_CASTEiJ_G0031476.1 mouse_genomes_project 7 76157052 76286946 + MGP_CASTEiJ_P0084941 Efl1 protein_coding protein_coding MGP_CASTEiJ_T0084942.1 MGP_CASTEiJ_G0031476.1 mouse_genomes_project 7 76178260 76182613 + Efl1 protein_coding processed_transcript MGP_CASTEiJ_T0082119.1 MGP_CASTEiJ_G0030814.1 mouse_genomes_project 7 14053849 14057296 - MGP_CASTEiJ_P0082119 Ppm1n protein_coding protein_coding MGP_CASTEiJ_T0082120.1 MGP_CASTEiJ_G0030814.1 mouse_genomes_project 7 14053886 14055611 - Ppm1n protein_coding retained_intron MGP_CASTEiJ_T0082121.1 MGP_CASTEiJ_G0030814.1 mouse_genomes_project 7 14055030 14055365 - Ppm1n protein_coding retained_intron MGP_CASTEiJ_T0082122.1 MGP_CASTEiJ_G0030814.1 mouse_genomes_project 7 14056038 14056833 - Ppm1n protein_coding retained_intron MGP_CASTEiJ_T0010589.1 MGP_CASTEiJ_G0008777.1 mouse_genomes_project 7 56818678 56818795 - Mir6416 miRNA miRNA MGP_CASTEiJ_T0002195.1 MGP_CASTEiJ_G0002114.1 mouse_genomes_project 7 69834489 69836083 - TEC TEC MGP_CASTEiJ_T0085600.1 MGP_CASTEiJ_G0031667.1 mouse_genomes_project 7 97814510 97815711 + MGP_CASTEiJ_P0085600 Olfr582 protein_coding protein_coding MGP_CASTEiJ_T0008670.1 MGP_CASTEiJ_G0007013.1 mouse_genomes_project 7 63217142 63235245 - Gm28258 lincRNA lincRNA MGP_CASTEiJ_T0081376.1 MGP_CASTEiJ_G0030593.1 mouse_genomes_project 7 493839 500168 - MGP_CASTEiJ_P0081376 Oscar protein_coding protein_coding MGP_CASTEiJ_T0081377.1 MGP_CASTEiJ_G0030593.1 mouse_genomes_project 7 493839 500192 - MGP_CASTEiJ_P0081377 Oscar protein_coding protein_coding MGP_CASTEiJ_T0081378.1 MGP_CASTEiJ_G0030593.1 mouse_genomes_project 7 493839 500192 - MGP_CASTEiJ_P0081378 Oscar protein_coding protein_coding MGP_CASTEiJ_T0081379.1 MGP_CASTEiJ_G0030593.1 mouse_genomes_project 7 495196 500120 - Oscar protein_coding processed_transcript MGP_CASTEiJ_T0087891.1 MGP_CASTEiJ_G0032282.1 mouse_genomes_project 7 139624545 139632469 + Mrpl23 protein_coding processed_transcript MGP_CASTEiJ_T0087892.1 MGP_CASTEiJ_G0032282.1 mouse_genomes_project 7 139624758 139632479 + MGP_CASTEiJ_P0087892 Mrpl23 protein_coding protein_coding MGP_CASTEiJ_T0087893.1 MGP_CASTEiJ_G0032282.1 mouse_genomes_project 7 139626265 139629024 + Mrpl23 protein_coding retained_intron MGP_CASTEiJ_T0087894.1 MGP_CASTEiJ_G0032282.1 mouse_genomes_project 7 139627846 139629644 + Mrpl23 protein_coding retained_intron MGP_CASTEiJ_T0083661.1 MGP_CASTEiJ_G0031193.1 mouse_genomes_project 7 36710255 36764927 + MGP_CASTEiJ_P0083661 Shank1 protein_coding protein_coding MGP_CASTEiJ_T0083662.1 MGP_CASTEiJ_G0031193.1 mouse_genomes_project 7 36712677 36762002 + MGP_CASTEiJ_P0083662 Shank1 protein_coding protein_coding MGP_CASTEiJ_T0083663.1 MGP_CASTEiJ_G0031193.1 mouse_genomes_project 7 36712696 36761852 + MGP_CASTEiJ_P0083663 Shank1 protein_coding protein_coding MGP_CASTEiJ_T0083664.1 MGP_CASTEiJ_G0031193.1 mouse_genomes_project 7 36738510 36746228 + Shank1 protein_coding processed_transcript MGP_CASTEiJ_T0083665.1 MGP_CASTEiJ_G0031193.1 mouse_genomes_project 7 36744625 36755885 + Shank1 protein_coding retained_intron MGP_CASTEiJ_T0083666.1 MGP_CASTEiJ_G0031193.1 mouse_genomes_project 7 36755288 36756584 + Shank1 protein_coding retained_intron MGP_CASTEiJ_T0086389.1 MGP_CASTEiJ_G0031973.1 mouse_genomes_project 7 117601344 117636000 - MGP_CASTEiJ_P0086389 Gga2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086390.1 MGP_CASTEiJ_G0031973.1 mouse_genomes_project 7 117601344 117636055 - MGP_CASTEiJ_P0086390 Gga2 protein_coding protein_coding MGP_CASTEiJ_T0086391.1 MGP_CASTEiJ_G0031973.1 mouse_genomes_project 7 117603389 117617272 - Gga2 protein_coding retained_intron MGP_CASTEiJ_T0086392.1 MGP_CASTEiJ_G0031973.1 mouse_genomes_project 7 117611417 117613876 - Gga2 protein_coding retained_intron MGP_CASTEiJ_T0086393.1 MGP_CASTEiJ_G0031973.1 mouse_genomes_project 7 117619524 117636013 - Gga2 protein_coding retained_intron MGP_CASTEiJ_T0086394.1 MGP_CASTEiJ_G0031973.1 mouse_genomes_project 7 117625189 117636020 - Gga2 protein_coding retained_intron MGP_CASTEiJ_T0082301.1 MGP_CASTEiJ_G0030870.1 mouse_genomes_project 7 16498684 16499539 - MGP_CASTEiJ_P0082301 Tescl protein_coding protein_coding MGP_CASTEiJ_T0082111.1 MGP_CASTEiJ_G0030812.1 mouse_genomes_project 7 14000141 14020111 + MGP_CASTEiJ_P0082111 Opa3 protein_coding protein_coding MGP_CASTEiJ_T0082112.1 MGP_CASTEiJ_G0030812.1 mouse_genomes_project 7 14000190 14000920 + Opa3 protein_coding retained_intron MGP_CASTEiJ_T0082113.1 MGP_CASTEiJ_G0030812.1 mouse_genomes_project 7 14000190 14030679 + MGP_CASTEiJ_P0082113 Opa3 protein_coding protein_coding MGP_CASTEiJ_T0085891.1 MGP_CASTEiJ_G0031843.1 mouse_genomes_project 7 103268007 103268952 - MGP_CASTEiJ_P0085891 Olfr493 protein_coding protein_coding MGP_CASTEiJ_T0082977.1 MGP_CASTEiJ_G0031036.1 mouse_genomes_project 7 22681823 22695968 - MGP_CASTEiJ_P0082977 Zfp566 protein_coding protein_coding MGP_CASTEiJ_T0082978.1 MGP_CASTEiJ_G0031036.1 mouse_genomes_project 7 22686198 22695904 - Zfp566 protein_coding retained_intron MGP_CASTEiJ_T0084709.1 MGP_CASTEiJ_G0031432.1 mouse_genomes_project 7 73195934 73206948 - MGP_CASTEiJ_P0084709 Arpin protein_coding protein_coding MGP_CASTEiJ_T0086581.1 MGP_CASTEiJ_G0032006.1 mouse_genomes_project 7 122198722 122217286 - MGP_CASTEiJ_P0086581 Atp2a1 protein_coding protein_coding MGP_CASTEiJ_T0086582.1 MGP_CASTEiJ_G0032006.1 mouse_genomes_project 7 122198724 122200510 - MGP_CASTEiJ_P0086582 Atp2a1 protein_coding protein_coding MGP_CASTEiJ_T0086583.1 MGP_CASTEiJ_G0032006.1 mouse_genomes_project 7 122198842 122218033 - MGP_CASTEiJ_P0086583 Atp2a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0017657.1 MGP_CASTEiJ_G0015001.1 mouse_genomes_project 7 107749360 107820135 - 2310014F06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0102499.1 MGP_CASTEiJ_G0039223.1 mouse_genomes_project 7 23629020 23629500 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0085695.1 MGP_CASTEiJ_G0031742.1 mouse_genomes_project 7 99515479 99516540 + MGP_CASTEiJ_P0085695 Olfr652 protein_coding protein_coding MGP_CASTEiJ_T0085696.1 MGP_CASTEiJ_G0031742.1 mouse_genomes_project 7 99515559 99516507 + MGP_CASTEiJ_P0085696 Olfr652 protein_coding protein_coding MGP_CASTEiJ_T0083506.1 MGP_CASTEiJ_G0031140.1 mouse_genomes_project 7 29749082 29763180 + MGP_CASTEiJ_P0083506 protein_coding protein_coding MGP_CASTEiJ_T0083507.1 MGP_CASTEiJ_G0031140.1 mouse_genomes_project 7 29749105 29749765 + protein_coding processed_transcript MGP_CASTEiJ_T0083508.1 MGP_CASTEiJ_G0031140.1 mouse_genomes_project 7 29749126 29762204 + MGP_CASTEiJ_P0083508 protein_coding protein_coding MGP_CASTEiJ_T0083509.1 MGP_CASTEiJ_G0031140.1 mouse_genomes_project 7 29749518 29763180 + MGP_CASTEiJ_P0083509 protein_coding protein_coding MGP_CASTEiJ_T0083510.1 MGP_CASTEiJ_G0031140.1 mouse_genomes_project 7 29749713 29754771 + MGP_CASTEiJ_P0083510 protein_coding protein_coding MGP_CASTEiJ_T0083511.1 MGP_CASTEiJ_G0031140.1 mouse_genomes_project 7 29749763 29760584 + MGP_CASTEiJ_P0083511 protein_coding protein_coding MGP_CASTEiJ_T0083512.1 MGP_CASTEiJ_G0031140.1 mouse_genomes_project 7 29752124 29760878 + MGP_CASTEiJ_P0083512 protein_coding protein_coding MGP_CASTEiJ_T0082143.1 MGP_CASTEiJ_G0030820.1 mouse_genomes_project 7 14170592 14185328 + MGP_CASTEiJ_P0082143 Ercc2 protein_coding protein_coding MGP_CASTEiJ_T0082144.1 MGP_CASTEiJ_G0030820.1 mouse_genomes_project 7 14170600 14175095 + Ercc2 protein_coding processed_transcript MGP_CASTEiJ_T0082145.1 MGP_CASTEiJ_G0030820.1 mouse_genomes_project 7 14170613 14185326 + MGP_CASTEiJ_P0082145 Ercc2 protein_coding protein_coding MGP_CASTEiJ_T0082146.1 MGP_CASTEiJ_G0030820.1 mouse_genomes_project 7 14170622 14185328 + MGP_CASTEiJ_P0082146 Ercc2 protein_coding protein_coding MGP_CASTEiJ_T0082147.1 MGP_CASTEiJ_G0030820.1 mouse_genomes_project 7 14170789 14175300 + Ercc2 protein_coding processed_transcript MGP_CASTEiJ_T0082148.1 MGP_CASTEiJ_G0030820.1 mouse_genomes_project 7 14170850 14184095 + MGP_CASTEiJ_P0082148 Ercc2 protein_coding protein_coding MGP_CASTEiJ_T0082149.1 MGP_CASTEiJ_G0030820.1 mouse_genomes_project 7 14177780 14183314 + Ercc2 protein_coding processed_transcript MGP_CASTEiJ_T0082150.1 MGP_CASTEiJ_G0030820.1 mouse_genomes_project 7 14180003 14181514 + Ercc2 protein_coding retained_intron MGP_CASTEiJ_T0082151.1 MGP_CASTEiJ_G0030820.1 mouse_genomes_project 7 14183063 14184420 + Ercc2 protein_coding retained_intron MGP_CASTEiJ_T0082152.1 MGP_CASTEiJ_G0030820.1 mouse_genomes_project 7 14183294 14183699 + Ercc2 protein_coding retained_intron MGP_CASTEiJ_T0084421.1 MGP_CASTEiJ_G0031378.1 mouse_genomes_project 7 58429871 58532641 + MGP_CASTEiJ_P0084421 Pcsk6 protein_coding protein_coding MGP_CASTEiJ_T0084422.1 MGP_CASTEiJ_G0031378.1 mouse_genomes_project 7 58430166 58630654 + MGP_CASTEiJ_P0084422 Pcsk6 protein_coding protein_coding MGP_CASTEiJ_T0084423.1 MGP_CASTEiJ_G0031378.1 mouse_genomes_project 7 58430273 58630602 + MGP_CASTEiJ_P0084423 Pcsk6 protein_coding protein_coding MGP_CASTEiJ_T0084424.1 MGP_CASTEiJ_G0031378.1 mouse_genomes_project 7 58430569 58630608 + MGP_CASTEiJ_P0084424 Pcsk6 protein_coding protein_coding MGP_CASTEiJ_T0084425.1 MGP_CASTEiJ_G0031378.1 mouse_genomes_project 7 58532668 58544148 + Pcsk6 protein_coding retained_intron MGP_CASTEiJ_T0084426.1 MGP_CASTEiJ_G0031378.1 mouse_genomes_project 7 58618734 58623814 + Pcsk6 protein_coding retained_intron MGP_CASTEiJ_T0083816.1 MGP_CASTEiJ_G0031218.1 mouse_genomes_project 7 37315476 37323037 - MGP_CASTEiJ_P0083816 Ptov1 protein_coding protein_coding MGP_CASTEiJ_T0085667.1 MGP_CASTEiJ_G0031732.1 mouse_genomes_project 7 99128810 99135459 - MGP_CASTEiJ_P0085667 Olfr649 protein_coding protein_coding MGP_CASTEiJ_T0085668.1 MGP_CASTEiJ_G0031732.1 mouse_genomes_project 7 99128811 99129750 - MGP_CASTEiJ_P0085668 Olfr649 protein_coding protein_coding MGP_CASTEiJ_T0100010.1 MGP_CASTEiJ_G0036923.1 mouse_genomes_project 7 48516284 48516346 + Gm26482 snRNA snRNA MGP_CASTEiJ_T0082237.1 MGP_CASTEiJ_G0030844.1 mouse_genomes_project 7 14721138 14728528 + MGP_CASTEiJ_P0082237 Gm19345 protein_coding protein_coding MGP_CASTEiJ_T0086267.1 MGP_CASTEiJ_G0031938.1 mouse_genomes_project 7 115002591 115021529 + MGP_CASTEiJ_P0086267 Acsm5 protein_coding protein_coding MGP_CASTEiJ_T0102567.1 MGP_CASTEiJ_G0039291.1 mouse_genomes_project 7 79744230 79744550 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008677.1 MGP_CASTEiJ_G0007020.1 mouse_genomes_project 7 65624026 65624330 - Gm28745 lincRNA lincRNA MGP_CASTEiJ_T0015213.1 MGP_CASTEiJ_G0013376.1 mouse_genomes_project 7 40886535 40886809 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102508.1 MGP_CASTEiJ_G0039232.1 mouse_genomes_project 7 25061770 25062747 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0081976.1 MGP_CASTEiJ_G0030771.1 mouse_genomes_project 7 11617107 11645644 + MGP_CASTEiJ_P0081976 Prkd2 protein_coding protein_coding MGP_CASTEiJ_T0081977.1 MGP_CASTEiJ_G0030771.1 mouse_genomes_project 7 11617270 11645742 + MGP_CASTEiJ_P0081977 Prkd2 protein_coding protein_coding MGP_CASTEiJ_T0081978.1 MGP_CASTEiJ_G0030771.1 mouse_genomes_project 7 11618366 11623306 + Prkd2 protein_coding processed_transcript MGP_CASTEiJ_T0081979.1 MGP_CASTEiJ_G0030771.1 mouse_genomes_project 7 11619442 11622230 + Prkd2 protein_coding processed_transcript MGP_CASTEiJ_T0081980.1 MGP_CASTEiJ_G0030771.1 mouse_genomes_project 7 11620435 11625023 + Prkd2 protein_coding retained_intron MGP_CASTEiJ_T0081981.1 MGP_CASTEiJ_G0030771.1 mouse_genomes_project 7 11623249 11629556 + Prkd2 protein_coding retained_intron MGP_CASTEiJ_T0081982.1 MGP_CASTEiJ_G0030771.1 mouse_genomes_project 7 11638639 11645162 + Prkd2 protein_coding retained_intron MGP_CASTEiJ_T0081983.1 MGP_CASTEiJ_G0030771.1 mouse_genomes_project 7 11644523 11645408 + Prkd2 protein_coding retained_intron MGP_CASTEiJ_T0011347.1 MGP_CASTEiJ_G0009535.1 mouse_genomes_project 7 8503874 8504142 + Gm23499 misc_RNA misc_RNA MGP_CASTEiJ_T0084033.1 MGP_CASTEiJ_G0031282.1 mouse_genomes_project 7 38403916 38411390 - MGP_CASTEiJ_P0084033 Cyth2 protein_coding protein_coding MGP_CASTEiJ_T0084034.1 MGP_CASTEiJ_G0031282.1 mouse_genomes_project 7 38404923 38411576 - MGP_CASTEiJ_P0084034 Cyth2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084035.1 MGP_CASTEiJ_G0031282.1 mouse_genomes_project 7 38404933 38411556 - MGP_CASTEiJ_P0084035 Cyth2 protein_coding protein_coding MGP_CASTEiJ_T0084036.1 MGP_CASTEiJ_G0031282.1 mouse_genomes_project 7 38407326 38411546 - Cyth2 protein_coding processed_transcript MGP_CASTEiJ_T0084037.1 MGP_CASTEiJ_G0031282.1 mouse_genomes_project 7 38408127 38411855 - MGP_CASTEiJ_P0084037 Cyth2 protein_coding protein_coding MGP_CASTEiJ_T0084038.1 MGP_CASTEiJ_G0031282.1 mouse_genomes_project 7 38408796 38411535 - Cyth2 protein_coding processed_transcript MGP_CASTEiJ_T0087542.1 MGP_CASTEiJ_G0032213.1 mouse_genomes_project 7 137588564 137589524 + MGP_CASTEiJ_P0087542 Olfr539 protein_coding protein_coding MGP_CASTEiJ_T0010607.1 MGP_CASTEiJ_G0008795.1 mouse_genomes_project 7 108868955 108869057 - Gm23700 miRNA miRNA MGP_CASTEiJ_T0085006.1 MGP_CASTEiJ_G0031511.1 mouse_genomes_project 7 80739881 80740816 + MGP_CASTEiJ_P0085006 protein_coding protein_coding MGP_CASTEiJ_T0083637.1 MGP_CASTEiJ_G0031182.1 mouse_genomes_project 7 36057778 36061039 + MGP_CASTEiJ_P0083637 Klk5 protein_coding protein_coding MGP_CASTEiJ_T0083638.1 MGP_CASTEiJ_G0031182.1 mouse_genomes_project 7 36058076 36066941 + MGP_CASTEiJ_P0083638 Klk5 protein_coding protein_coding MGP_CASTEiJ_T0087262.1 MGP_CASTEiJ_G0032132.1 mouse_genomes_project 7 127536518 127577054 + MGP_CASTEiJ_P0087262 Acadsb protein_coding protein_coding MGP_CASTEiJ_T0087263.1 MGP_CASTEiJ_G0032132.1 mouse_genomes_project 7 127536620 127575606 + MGP_CASTEiJ_P0087263 Acadsb protein_coding protein_coding MGP_CASTEiJ_T0087264.1 MGP_CASTEiJ_G0032132.1 mouse_genomes_project 7 127550282 127556463 + Acadsb protein_coding retained_intron MGP_CASTEiJ_T0087265.1 MGP_CASTEiJ_G0032132.1 mouse_genomes_project 7 127550317 127554584 + Acadsb protein_coding retained_intron MGP_CASTEiJ_T0087266.1 MGP_CASTEiJ_G0032132.1 mouse_genomes_project 7 127554377 127559586 + Acadsb protein_coding retained_intron MGP_CASTEiJ_T0087267.1 MGP_CASTEiJ_G0032132.1 mouse_genomes_project 7 127555618 127577052 + Acadsb protein_coding retained_intron MGP_CASTEiJ_T0087268.1 MGP_CASTEiJ_G0032132.1 mouse_genomes_project 7 127561653 127567002 + Acadsb protein_coding retained_intron MGP_CASTEiJ_T0083313.1 MGP_CASTEiJ_G0031104.1 mouse_genomes_project 7 24901060 24903181 - MGP_CASTEiJ_P0083313 Scgb2b24 protein_coding protein_coding MGP_CASTEiJ_T0017682.1 MGP_CASTEiJ_G0015015.1 mouse_genomes_project 7 138342208 138348118 - B230206H07Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017683.1 MGP_CASTEiJ_G0015015.1 mouse_genomes_project 7 138342245 138348146 - B230206H07Rik processed_transcript processed_transcript MGP_CASTEiJ_T0083880.1 MGP_CASTEiJ_G0031246.1 mouse_genomes_project 7 37730152 37735392 - MGP_CASTEiJ_P0083880 Cd37 protein_coding protein_coding MGP_CASTEiJ_T0083881.1 MGP_CASTEiJ_G0031246.1 mouse_genomes_project 7 37730157 37735367 - Cd37 protein_coding retained_intron MGP_CASTEiJ_T0083882.1 MGP_CASTEiJ_G0031246.1 mouse_genomes_project 7 37730161 37735666 - MGP_CASTEiJ_P0083882 Cd37 protein_coding protein_coding MGP_CASTEiJ_T0083883.1 MGP_CASTEiJ_G0031246.1 mouse_genomes_project 7 37730163 37732039 - Cd37 protein_coding processed_transcript MGP_CASTEiJ_T0083884.1 MGP_CASTEiJ_G0031246.1 mouse_genomes_project 7 37730411 37733622 - Cd37 protein_coding processed_transcript MGP_CASTEiJ_T0083885.1 MGP_CASTEiJ_G0031246.1 mouse_genomes_project 7 37730690 37735425 - MGP_CASTEiJ_P0083885 Cd37 protein_coding protein_coding MGP_CASTEiJ_T0083886.1 MGP_CASTEiJ_G0031246.1 mouse_genomes_project 7 37730870 37731998 - Cd37 protein_coding processed_transcript MGP_CASTEiJ_T0083887.1 MGP_CASTEiJ_G0031246.1 mouse_genomes_project 7 37731258 37735608 - MGP_CASTEiJ_P0083887 Cd37 protein_coding protein_coding MGP_CASTEiJ_T0083888.1 MGP_CASTEiJ_G0031246.1 mouse_genomes_project 7 37734278 37735348 - Cd37 protein_coding retained_intron MGP_CASTEiJ_T0008676.1 MGP_CASTEiJ_G0007019.1 mouse_genomes_project 7 64903910 64967127 + 1700011C11Rik lincRNA lincRNA MGP_CASTEiJ_T0085611.1 MGP_CASTEiJ_G0031677.1 mouse_genomes_project 7 97997883 97998819 + MGP_CASTEiJ_P0085611 Olfr594 protein_coding protein_coding MGP_CASTEiJ_T0087587.1 MGP_CASTEiJ_G0032227.1 mouse_genomes_project 7 137850055 137858178 + MGP_CASTEiJ_P0087587 Nlrp6 protein_coding protein_coding MGP_CASTEiJ_T0087588.1 MGP_CASTEiJ_G0032227.1 mouse_genomes_project 7 137850055 137857528 + MGP_CASTEiJ_P0087588 Nlrp6 protein_coding protein_coding MGP_CASTEiJ_T0087589.1 MGP_CASTEiJ_G0032227.1 mouse_genomes_project 7 137850224 137856538 + MGP_CASTEiJ_P0087589 Nlrp6 protein_coding protein_coding MGP_CASTEiJ_T0087590.1 MGP_CASTEiJ_G0032227.1 mouse_genomes_project 7 137851259 137852009 + Nlrp6 protein_coding retained_intron MGP_CASTEiJ_T0102520.1 MGP_CASTEiJ_G0039244.1 mouse_genomes_project 7 36273070 36275304 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0086450.1 MGP_CASTEiJ_G0031985.1 mouse_genomes_project 7 118822299 118867743 + Tnrc6a protein_coding processed_transcript MGP_CASTEiJ_T0086451.1 MGP_CASTEiJ_G0031985.1 mouse_genomes_project 7 118822591 118899060 + MGP_CASTEiJ_P0086451 Tnrc6a protein_coding protein_coding MGP_CASTEiJ_T0086452.1 MGP_CASTEiJ_G0031985.1 mouse_genomes_project 7 118822595 118900369 + MGP_CASTEiJ_P0086452 Tnrc6a protein_coding protein_coding MGP_CASTEiJ_T0086453.1 MGP_CASTEiJ_G0031985.1 mouse_genomes_project 7 118822670 118882718 + MGP_CASTEiJ_P0086453 Tnrc6a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086454.1 MGP_CASTEiJ_G0031985.1 mouse_genomes_project 7 118874186 118875969 + Tnrc6a protein_coding retained_intron MGP_CASTEiJ_T0086455.1 MGP_CASTEiJ_G0031985.1 mouse_genomes_project 7 118875695 118899051 + MGP_CASTEiJ_P0086455 Tnrc6a protein_coding protein_coding MGP_CASTEiJ_T0086456.1 MGP_CASTEiJ_G0031985.1 mouse_genomes_project 7 118876451 118880751 + Tnrc6a protein_coding retained_intron MGP_CASTEiJ_T0086457.1 MGP_CASTEiJ_G0031985.1 mouse_genomes_project 7 118876710 118879485 + Tnrc6a protein_coding retained_intron MGP_CASTEiJ_T0086458.1 MGP_CASTEiJ_G0031985.1 mouse_genomes_project 7 118877910 118879250 + Tnrc6a protein_coding retained_intron MGP_CASTEiJ_T0086459.1 MGP_CASTEiJ_G0031985.1 mouse_genomes_project 7 118879267 118885661 + MGP_CASTEiJ_P0086459 Tnrc6a protein_coding protein_coding MGP_CASTEiJ_T0086460.1 MGP_CASTEiJ_G0031985.1 mouse_genomes_project 7 118884960 118898805 + Tnrc6a protein_coding retained_intron MGP_CASTEiJ_T0100037.1 MGP_CASTEiJ_G0036950.1 mouse_genomes_project 7 115484830 115484931 + Gm25217 snRNA snRNA MGP_CASTEiJ_T0085669.1 MGP_CASTEiJ_G0031733.1 mouse_genomes_project 7 99162585 99174863 + Trim6 protein_coding retained_intron MGP_CASTEiJ_T0085670.1 MGP_CASTEiJ_G0031733.1 mouse_genomes_project 7 99162587 99190040 + MGP_CASTEiJ_P0085670 Trim6 protein_coding protein_coding MGP_CASTEiJ_T0085671.1 MGP_CASTEiJ_G0031733.1 mouse_genomes_project 7 99162629 99170389 + MGP_CASTEiJ_P0085671 Trim6 protein_coding protein_coding MGP_CASTEiJ_T0085672.1 MGP_CASTEiJ_G0031733.1 mouse_genomes_project 7 99163221 99170426 + MGP_CASTEiJ_P0085672 Trim6 protein_coding protein_coding MGP_CASTEiJ_T0085673.1 MGP_CASTEiJ_G0031733.1 mouse_genomes_project 7 99164753 99171364 + MGP_CASTEiJ_P0085673 Trim6 protein_coding protein_coding MGP_CASTEiJ_T0085674.1 MGP_CASTEiJ_G0031733.1 mouse_genomes_project 7 99169999 99187904 + MGP_CASTEiJ_P0085674 Trim6 protein_coding protein_coding MGP_CASTEiJ_T0086874.1 MGP_CASTEiJ_G0032056.1 mouse_genomes_project 7 123072454 123076198 - MGP_CASTEiJ_P0086874 Dctpp1 protein_coding protein_coding MGP_CASTEiJ_T0008715.1 MGP_CASTEiJ_G0007046.1 mouse_genomes_project 7 72839003 72844615 - Gm45169 lincRNA lincRNA MGP_CASTEiJ_T0002211.1 MGP_CASTEiJ_G0002130.1 mouse_genomes_project 7 73516526 73518839 + TEC TEC MGP_CASTEiJ_T0082857.1 MGP_CASTEiJ_G0031007.1 mouse_genomes_project 7 21526233 21537777 - MGP_CASTEiJ_P0082857 Eif3k protein_coding protein_coding MGP_CASTEiJ_T0015202.1 MGP_CASTEiJ_G0013365.1 mouse_genomes_project 7 34716445 34718168 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008605.1 MGP_CASTEiJ_G0006965.1 mouse_genomes_project 7 25872822 25873543 - Gm44837 lincRNA lincRNA MGP_CASTEiJ_T0005008.1 MGP_CASTEiJ_G0004280.1 mouse_genomes_project 7 3933579 3955082 - Zim3 antisense antisense MGP_CASTEiJ_T0005009.1 MGP_CASTEiJ_G0004280.1 mouse_genomes_project 7 3941347 3952965 - Zim3 antisense antisense MGP_CASTEiJ_T0005010.1 MGP_CASTEiJ_G0004280.1 mouse_genomes_project 7 3954723 3955838 - Zim3 antisense antisense MGP_CASTEiJ_T0102459.1 MGP_CASTEiJ_G0039184.1 mouse_genomes_project 7 7116353 7116641 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0081908.1 MGP_CASTEiJ_G0030754.1 mouse_genomes_project 7 10908147 10916686 - Dhx34 protein_coding retained_intron MGP_CASTEiJ_T0081909.1 MGP_CASTEiJ_G0030754.1 mouse_genomes_project 7 10908147 10934613 - MGP_CASTEiJ_P0081909 Dhx34 protein_coding protein_coding MGP_CASTEiJ_T0081910.1 MGP_CASTEiJ_G0030754.1 mouse_genomes_project 7 10908221 10934569 - MGP_CASTEiJ_P0081910 Dhx34 protein_coding protein_coding MGP_CASTEiJ_T0081911.1 MGP_CASTEiJ_G0030754.1 mouse_genomes_project 7 10908221 10934569 - MGP_CASTEiJ_P0081911 Dhx34 protein_coding protein_coding MGP_CASTEiJ_T0081912.1 MGP_CASTEiJ_G0030754.1 mouse_genomes_project 7 10908297 10934635 - MGP_CASTEiJ_P0081912 Dhx34 protein_coding unknown_likely_coding MGP_CASTEiJ_T0081913.1 MGP_CASTEiJ_G0030754.1 mouse_genomes_project 7 10918471 10925821 - Dhx34 protein_coding processed_transcript MGP_CASTEiJ_T0084442.1 MGP_CASTEiJ_G0031382.1 mouse_genomes_project 7 58699453 58763570 + MGP_CASTEiJ_P0084442 Chsy1 protein_coding protein_coding MGP_CASTEiJ_T0101834.1 MGP_CASTEiJ_G0038589.1 mouse_genomes_project 7 99359292 99420643 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101835.1 MGP_CASTEiJ_G0038589.1 mouse_genomes_project 7 99360028 99361269 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0008631.1 MGP_CASTEiJ_G0006986.1 mouse_genomes_project 7 32302214 32319325 + 4933402C06Rik lincRNA lincRNA MGP_CASTEiJ_T0008632.1 MGP_CASTEiJ_G0006986.1 mouse_genomes_project 7 32302214 32310733 + 4933402C06Rik lincRNA lincRNA MGP_CASTEiJ_T0008612.1 MGP_CASTEiJ_G0006972.1 mouse_genomes_project 7 27490813 27493950 + Gm45143 lincRNA lincRNA MGP_CASTEiJ_T0015178.1 MGP_CASTEiJ_G0013341.1 mouse_genomes_project 7 24930756 24931482 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083525.1 MGP_CASTEiJ_G0031145.1 mouse_genomes_project 7 32820693 32826023 + MGP_CASTEiJ_P0083525 protein_coding protein_coding MGP_CASTEiJ_T0084640.1 MGP_CASTEiJ_G0031418.1 mouse_genomes_project 7 72510606 72600710 + MGP_CASTEiJ_P0084640 Abhd2 protein_coding protein_coding MGP_CASTEiJ_T0084641.1 MGP_CASTEiJ_G0031418.1 mouse_genomes_project 7 72510661 72579470 + Abhd2 protein_coding processed_transcript MGP_CASTEiJ_T0084071.1 MGP_CASTEiJ_G0031292.1 mouse_genomes_project 7 38645756 38708521 + MGP_CASTEiJ_P0084071 Nomo1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084072.1 MGP_CASTEiJ_G0031292.1 mouse_genomes_project 7 38645795 38699011 + MGP_CASTEiJ_P0084072 Nomo1 protein_coding protein_coding MGP_CASTEiJ_T0084073.1 MGP_CASTEiJ_G0031292.1 mouse_genomes_project 7 38663720 38664493 + Nomo1 protein_coding retained_intron MGP_CASTEiJ_T0084074.1 MGP_CASTEiJ_G0031292.1 mouse_genomes_project 7 38667156 38670109 + Nomo1 protein_coding retained_intron MGP_CASTEiJ_T0084075.1 MGP_CASTEiJ_G0031292.1 mouse_genomes_project 7 38671384 38674016 + Nomo1 protein_coding retained_intron MGP_CASTEiJ_T0084076.1 MGP_CASTEiJ_G0031292.1 mouse_genomes_project 7 38697463 38698602 + Nomo1 protein_coding retained_intron MGP_CASTEiJ_T0081938.1 MGP_CASTEiJ_G0030762.1 mouse_genomes_project 7 11195057 11197875 + MGP_CASTEiJ_P0081938 Tmem160 protein_coding protein_coding MGP_CASTEiJ_T0084990.1 MGP_CASTEiJ_G0031496.1 mouse_genomes_project 7 80282978 80296319 - MGP_CASTEiJ_P0084990 Vmn2r76 protein_coding protein_coding MGP_CASTEiJ_T0085021.1 MGP_CASTEiJ_G0031517.1 mouse_genomes_project 7 81487967 81561988 - MGP_CASTEiJ_P0085021 Tyr protein_coding protein_coding MGP_CASTEiJ_T0081486.1 MGP_CASTEiJ_G0030608.1 mouse_genomes_project 7 1133846 1139541 + MGP_CASTEiJ_P0081486 Lilra5 protein_coding protein_coding MGP_CASTEiJ_T0010623.1 MGP_CASTEiJ_G0008811.1 mouse_genomes_project 7 136882020 136882086 - Mir7062 miRNA miRNA MGP_CASTEiJ_T0011369.1 MGP_CASTEiJ_G0009557.1 mouse_genomes_project 7 139671325 139671395 + Gm27786 misc_RNA misc_RNA MGP_CASTEiJ_T0017675.1 MGP_CASTEiJ_G0015011.1 mouse_genomes_project 7 124376590 124391406 + Gm45019 processed_transcript lincRNA MGP_CASTEiJ_T0017676.1 MGP_CASTEiJ_G0015011.1 mouse_genomes_project 7 124390052 124391405 + Gm45019 processed_transcript retained_intron MGP_CASTEiJ_T0083746.1 MGP_CASTEiJ_G0031205.1 mouse_genomes_project 7 37009055 37019220 + Napsa protein_coding retained_intron MGP_CASTEiJ_T0083747.1 MGP_CASTEiJ_G0031205.1 mouse_genomes_project 7 37009239 37026348 + MGP_CASTEiJ_P0083747 Napsa protein_coding unknown_likely_coding MGP_CASTEiJ_T0085615.1 MGP_CASTEiJ_G0031681.1 mouse_genomes_project 7 98134025 98134970 - MGP_CASTEiJ_P0085615 protein_coding protein_coding MGP_CASTEiJ_T0085995.1 MGP_CASTEiJ_G0031884.1 mouse_genomes_project 7 105681788 105683948 + MGP_CASTEiJ_P0085995 Adm protein_coding protein_coding MGP_CASTEiJ_T0085996.1 MGP_CASTEiJ_G0031884.1 mouse_genomes_project 7 105681796 105683947 + MGP_CASTEiJ_P0085996 Adm protein_coding protein_coding MGP_CASTEiJ_T0085997.1 MGP_CASTEiJ_G0031884.1 mouse_genomes_project 7 105682155 105682679 + Adm protein_coding retained_intron MGP_CASTEiJ_T0081640.1 MGP_CASTEiJ_G0030646.1 mouse_genomes_project 7 1987193 1991175 - MGP_CASTEiJ_P0081640 Zfp784 protein_coding protein_coding MGP_CASTEiJ_T0084789.1 MGP_CASTEiJ_G0031446.1 mouse_genomes_project 7 73702581 73712754 - MGP_CASTEiJ_P0084789 Fes protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084790.1 MGP_CASTEiJ_G0031446.1 mouse_genomes_project 7 73702583 73705266 - Fes protein_coding retained_intron MGP_CASTEiJ_T0084791.1 MGP_CASTEiJ_G0031446.1 mouse_genomes_project 7 73702583 73712764 - MGP_CASTEiJ_P0084791 Fes protein_coding protein_coding MGP_CASTEiJ_T0084792.1 MGP_CASTEiJ_G0031446.1 mouse_genomes_project 7 73702583 73704460 - MGP_CASTEiJ_P0084792 Fes protein_coding protein_coding MGP_CASTEiJ_T0084793.1 MGP_CASTEiJ_G0031446.1 mouse_genomes_project 7 73702588 73712689 - MGP_CASTEiJ_P0084793 Fes protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084794.1 MGP_CASTEiJ_G0031446.1 mouse_genomes_project 7 73702589 73712759 - MGP_CASTEiJ_P0084794 Fes protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084795.1 MGP_CASTEiJ_G0031446.1 mouse_genomes_project 7 73702598 73712239 - MGP_CASTEiJ_P0084795 Fes protein_coding protein_coding MGP_CASTEiJ_T0084796.1 MGP_CASTEiJ_G0031446.1 mouse_genomes_project 7 73709058 73712713 - MGP_CASTEiJ_P0084796 Fes protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084797.1 MGP_CASTEiJ_G0031446.1 mouse_genomes_project 7 73711733 73712699 - MGP_CASTEiJ_P0084797 Fes protein_coding protein_coding MGP_CASTEiJ_T0084798.1 MGP_CASTEiJ_G0031446.1 mouse_genomes_project 7 73711859 73712712 - Fes protein_coding retained_intron MGP_CASTEiJ_T0005081.1 MGP_CASTEiJ_G0004331.1 mouse_genomes_project 7 49051243 49052224 - Gm44506 antisense antisense MGP_CASTEiJ_T0008595.1 MGP_CASTEiJ_G0006956.1 mouse_genomes_project 7 22445857 22452540 + Gm26554 lincRNA lincRNA MGP_CASTEiJ_T0081694.1 MGP_CASTEiJ_G0030669.1 mouse_genomes_project 7 3358960 3398575 + MGP_CASTEiJ_P0081694 Smim17 protein_coding protein_coding MGP_CASTEiJ_T0081695.1 MGP_CASTEiJ_G0030669.1 mouse_genomes_project 7 3358993 3369751 + Smim17 protein_coding processed_transcript MGP_CASTEiJ_T0081697.1 MGP_CASTEiJ_G0030669.1 mouse_genomes_project 7 3382161 3401246 + MGP_CASTEiJ_P0081697 Smim17 protein_coding protein_coding MGP_CASTEiJ_T0005037.1 MGP_CASTEiJ_G0004299.1 mouse_genomes_project 7 19896448 19901649 - Gm15541 antisense antisense MGP_CASTEiJ_T0083054.1 MGP_CASTEiJ_G0031052.1 mouse_genomes_project 7 22960031 22961764 + MGP_CASTEiJ_P0083054 E130208F15Rik protein_coding protein_coding MGP_CASTEiJ_T0085569.1 MGP_CASTEiJ_G0031639.1 mouse_genomes_project 7 97304048 97304993 + MGP_CASTEiJ_P0085569 Olfr547 protein_coding protein_coding MGP_CASTEiJ_T0085294.1 MGP_CASTEiJ_G0031582.1 mouse_genomes_project 7 94268083 94269034 + MGP_CASTEiJ_P0085294 Olfr520 protein_coding protein_coding MGP_CASTEiJ_T0085220.1 MGP_CASTEiJ_G0031565.1 mouse_genomes_project 7 92793515 92804047 - MGP_CASTEiJ_P0085220 Tsku protein_coding protein_coding MGP_CASTEiJ_T0085221.1 MGP_CASTEiJ_G0031565.1 mouse_genomes_project 7 92793515 92804043 - MGP_CASTEiJ_P0085221 Tsku protein_coding protein_coding MGP_CASTEiJ_T0085222.1 MGP_CASTEiJ_G0031565.1 mouse_genomes_project 7 92793515 92804083 - MGP_CASTEiJ_P0085222 Tsku protein_coding protein_coding MGP_CASTEiJ_T0085223.1 MGP_CASTEiJ_G0031565.1 mouse_genomes_project 7 92793515 92804043 - MGP_CASTEiJ_P0085223 Tsku protein_coding protein_coding MGP_CASTEiJ_T0085224.1 MGP_CASTEiJ_G0031565.1 mouse_genomes_project 7 92793633 92802833 - MGP_CASTEiJ_P0085224 Tsku protein_coding protein_coding MGP_CASTEiJ_T0085225.1 MGP_CASTEiJ_G0031565.1 mouse_genomes_project 7 92793633 92802833 - MGP_CASTEiJ_P0085225 Tsku protein_coding protein_coding MGP_CASTEiJ_T0085226.1 MGP_CASTEiJ_G0031565.1 mouse_genomes_project 7 92793715 92804043 - MGP_CASTEiJ_P0085226 Tsku protein_coding protein_coding MGP_CASTEiJ_T0085227.1 MGP_CASTEiJ_G0031565.1 mouse_genomes_project 7 92796324 92802941 - Tsku protein_coding processed_transcript MGP_CASTEiJ_T0102528.1 MGP_CASTEiJ_G0039252.1 mouse_genomes_project 7 39957756 39958245 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0087706.1 MGP_CASTEiJ_G0032255.1 mouse_genomes_project 7 138422703 138425769 - MGP_CASTEiJ_P0087706 Cend1 protein_coding protein_coding MGP_CASTEiJ_T0087707.1 MGP_CASTEiJ_G0032255.1 mouse_genomes_project 7 138422703 138425703 - MGP_CASTEiJ_P0087707 Cend1 protein_coding protein_coding MGP_CASTEiJ_T0087708.1 MGP_CASTEiJ_G0032255.1 mouse_genomes_project 7 138422708 138425696 - MGP_CASTEiJ_P0087708 Cend1 protein_coding protein_coding MGP_CASTEiJ_T0087709.1 MGP_CASTEiJ_G0032255.1 mouse_genomes_project 7 138422708 138425629 - MGP_CASTEiJ_P0087709 Cend1 protein_coding protein_coding MGP_CASTEiJ_T0085703.1 MGP_CASTEiJ_G0031749.1 mouse_genomes_project 7 99636136 99637105 + MGP_CASTEiJ_P0085703 Olfr659 protein_coding protein_coding MGP_CASTEiJ_T0015329.1 MGP_CASTEiJ_G0013492.1 mouse_genomes_project 7 130011517 130011981 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081958.1 MGP_CASTEiJ_G0030769.1 mouse_genomes_project 7 11582720 11590228 - MGP_CASTEiJ_P0081958 Fkrp protein_coding protein_coding MGP_CASTEiJ_T0081959.1 MGP_CASTEiJ_G0030769.1 mouse_genomes_project 7 11585087 11589017 - MGP_CASTEiJ_P0081959 Fkrp protein_coding protein_coding MGP_CASTEiJ_T0081960.1 MGP_CASTEiJ_G0030769.1 mouse_genomes_project 7 11586608 11589189 - Fkrp protein_coding retained_intron MGP_CASTEiJ_T0081961.1 MGP_CASTEiJ_G0030769.1 mouse_genomes_project 7 11588231 11590228 - Fkrp protein_coding retained_intron MGP_CASTEiJ_T0086887.1 MGP_CASTEiJ_G0032063.1 mouse_genomes_project 7 123225083 123234042 - MGP_CASTEiJ_P0086887 protein_coding protein_coding MGP_CASTEiJ_T0101273.1 MGP_CASTEiJ_G0038186.1 mouse_genomes_project 7 113560097 113560229 + Gm25683 snoRNA snoRNA MGP_CASTEiJ_T0083566.1 MGP_CASTEiJ_G0031157.1 mouse_genomes_project 7 35598611 35607199 + MGP_CASTEiJ_P0083566 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0017670.1 MGP_CASTEiJ_G0015008.1 mouse_genomes_project 7 123296549 123305028 + B130055M24Rik processed_transcript processed_transcript MGP_CASTEiJ_T0005078.1 MGP_CASTEiJ_G0004330.1 mouse_genomes_project 7 43408016 43460514 - Nell1os antisense antisense MGP_CASTEiJ_T0005079.1 MGP_CASTEiJ_G0004330.1 mouse_genomes_project 7 43432791 43460587 - Nell1os antisense antisense MGP_CASTEiJ_T0005080.1 MGP_CASTEiJ_G0004330.1 mouse_genomes_project 7 43446846 43458131 - Nell1os antisense antisense MGP_CASTEiJ_T0087493.1 MGP_CASTEiJ_G0032190.1 mouse_genomes_project 7 136992614 136998421 - MGP_CASTEiJ_P0087493 Fuom protein_coding protein_coding MGP_CASTEiJ_T0087494.1 MGP_CASTEiJ_G0032190.1 mouse_genomes_project 7 136994350 136998424 - MGP_CASTEiJ_P0087494 Fuom protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087495.1 MGP_CASTEiJ_G0032190.1 mouse_genomes_project 7 136995312 136998394 - MGP_CASTEiJ_P0087495 Fuom protein_coding protein_coding MGP_CASTEiJ_T0087496.1 MGP_CASTEiJ_G0032190.1 mouse_genomes_project 7 136995312 136998459 - MGP_CASTEiJ_P0087496 Fuom protein_coding protein_coding MGP_CASTEiJ_T0087497.1 MGP_CASTEiJ_G0032190.1 mouse_genomes_project 7 136995314 136995811 - Fuom protein_coding retained_intron MGP_CASTEiJ_T0087498.1 MGP_CASTEiJ_G0032190.1 mouse_genomes_project 7 136995316 136998338 - Fuom protein_coding processed_transcript MGP_CASTEiJ_T0087499.1 MGP_CASTEiJ_G0032190.1 mouse_genomes_project 7 136995336 136997196 - Fuom protein_coding retained_intron MGP_CASTEiJ_T0087500.1 MGP_CASTEiJ_G0032190.1 mouse_genomes_project 7 136995731 136998362 - MGP_CASTEiJ_P0087500 Fuom protein_coding protein_coding MGP_CASTEiJ_T0087501.1 MGP_CASTEiJ_G0032190.1 mouse_genomes_project 7 136996507 136998424 - MGP_CASTEiJ_P0087501 Fuom protein_coding protein_coding MGP_CASTEiJ_T0087502.1 MGP_CASTEiJ_G0032190.1 mouse_genomes_project 7 136997054 136998324 - Fuom protein_coding processed_transcript MGP_CASTEiJ_T0087503.1 MGP_CASTEiJ_G0032190.1 mouse_genomes_project 7 136997106 136997948 - Fuom protein_coding processed_transcript MGP_CASTEiJ_T0087504.1 MGP_CASTEiJ_G0032190.1 mouse_genomes_project 7 136997115 136998424 - Fuom protein_coding retained_intron MGP_CASTEiJ_T0087505.1 MGP_CASTEiJ_G0032190.1 mouse_genomes_project 7 136997230 136998348 - Fuom protein_coding retained_intron MGP_CASTEiJ_T0082171.1 MGP_CASTEiJ_G0030827.1 mouse_genomes_project 7 14326290 14328805 - MGP_CASTEiJ_P0082171 Bloc1s3 protein_coding protein_coding MGP_CASTEiJ_T0008712.1 MGP_CASTEiJ_G0007044.1 mouse_genomes_project 7 72784086 72809232 + Gm35040 lincRNA lincRNA MGP_CASTEiJ_T0088041.1 MGP_CASTEiJ_G0032314.1 mouse_genomes_project 7 142109121 142143650 - MGP_CASTEiJ_P0088041 Ccnd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088048.1 MGP_CASTEiJ_G0032314.1 mouse_genomes_project 7 142133830 142143769 - MGP_CASTEiJ_P0088048 Ccnd1 protein_coding protein_coding MGP_CASTEiJ_T0088049.1 MGP_CASTEiJ_G0032314.1 mouse_genomes_project 7 142141194 142142097 - Ccnd1 protein_coding retained_intron MGP_CASTEiJ_T0083556.1 MGP_CASTEiJ_G0031154.1 mouse_genomes_project 7 35512123 35522381 + Siglecf protein_coding retained_intron MGP_CASTEiJ_T0083557.1 MGP_CASTEiJ_G0031154.1 mouse_genomes_project 7 35512123 35522383 + MGP_CASTEiJ_P0083557 Siglecf protein_coding protein_coding MGP_CASTEiJ_T0083558.1 MGP_CASTEiJ_G0031154.1 mouse_genomes_project 7 35512165 35512626 + Siglecf protein_coding processed_transcript MGP_CASTEiJ_T0083559.1 MGP_CASTEiJ_G0031154.1 mouse_genomes_project 7 35512190 35522444 + MGP_CASTEiJ_P0083559 Siglecf protein_coding protein_coding MGP_CASTEiJ_T0083560.1 MGP_CASTEiJ_G0031154.1 mouse_genomes_project 7 35512304 35522201 + MGP_CASTEiJ_P0083560 Siglecf protein_coding protein_coding MGP_CASTEiJ_T0083561.1 MGP_CASTEiJ_G0031154.1 mouse_genomes_project 7 35512330 35519580 + MGP_CASTEiJ_P0083561 Siglecf protein_coding protein_coding MGP_CASTEiJ_T0083573.1 MGP_CASTEiJ_G0031161.1 mouse_genomes_project 7 35615306 35630344 + MGP_CASTEiJ_P0083573 Etfb protein_coding protein_coding MGP_CASTEiJ_T0083574.1 MGP_CASTEiJ_G0031161.1 mouse_genomes_project 7 35615342 35630208 + MGP_CASTEiJ_P0083574 Etfb protein_coding protein_coding MGP_CASTEiJ_T0083576.1 MGP_CASTEiJ_G0031161.1 mouse_genomes_project 7 35615353 35629118 + MGP_CASTEiJ_P0083576 Etfb protein_coding protein_coding MGP_CASTEiJ_T0083578.1 MGP_CASTEiJ_G0031161.1 mouse_genomes_project 7 35615373 35630325 + MGP_CASTEiJ_P0083578 Etfb protein_coding protein_coding MGP_CASTEiJ_T0083579.1 MGP_CASTEiJ_G0031161.1 mouse_genomes_project 7 35625445 35630325 + MGP_CASTEiJ_P0083579 Etfb protein_coding protein_coding MGP_CASTEiJ_T0083580.1 MGP_CASTEiJ_G0031161.1 mouse_genomes_project 7 35629045 35630324 + Etfb protein_coding processed_transcript MGP_CASTEiJ_T0083581.1 MGP_CASTEiJ_G0031161.1 mouse_genomes_project 7 35629579 35630327 + Etfb protein_coding processed_transcript MGP_CASTEiJ_T0084235.1 MGP_CASTEiJ_G0031342.1 mouse_genomes_project 7 44897884 44902796 - MGP_CASTEiJ_P0084235 1700015G11Rik protein_coding protein_coding MGP_CASTEiJ_T0084236.1 MGP_CASTEiJ_G0031342.1 mouse_genomes_project 7 44897886 44902771 - MGP_CASTEiJ_P0084236 1700015G11Rik protein_coding protein_coding MGP_CASTEiJ_T0084237.1 MGP_CASTEiJ_G0031342.1 mouse_genomes_project 7 44897888 44902763 - MGP_CASTEiJ_P0084237 1700015G11Rik protein_coding protein_coding MGP_CASTEiJ_T0084238.1 MGP_CASTEiJ_G0031342.1 mouse_genomes_project 7 44897891 44902750 - MGP_CASTEiJ_P0084238 1700015G11Rik protein_coding protein_coding MGP_CASTEiJ_T0086837.1 MGP_CASTEiJ_G0032050.1 mouse_genomes_project 7 123004508 123009607 - MGP_CASTEiJ_P0086837 Cd2bp2 protein_coding protein_coding MGP_CASTEiJ_T0086838.1 MGP_CASTEiJ_G0032050.1 mouse_genomes_project 7 123004836 123009545 - MGP_CASTEiJ_P0086838 Cd2bp2 protein_coding protein_coding MGP_CASTEiJ_T0086839.1 MGP_CASTEiJ_G0032050.1 mouse_genomes_project 7 123004863 123009556 - Cd2bp2 protein_coding retained_intron MGP_CASTEiJ_T0086840.1 MGP_CASTEiJ_G0032050.1 mouse_genomes_project 7 123004865 123009594 - MGP_CASTEiJ_P0086840 Cd2bp2 protein_coding protein_coding MGP_CASTEiJ_T0086841.1 MGP_CASTEiJ_G0032050.1 mouse_genomes_project 7 123007264 123009482 - MGP_CASTEiJ_P0086841 Cd2bp2 protein_coding protein_coding MGP_CASTEiJ_T0086842.1 MGP_CASTEiJ_G0032050.1 mouse_genomes_project 7 123008068 123009051 - MGP_CASTEiJ_P0086842 Cd2bp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086843.1 MGP_CASTEiJ_G0032050.1 mouse_genomes_project 7 123008133 123009549 - MGP_CASTEiJ_P0086843 Cd2bp2 protein_coding protein_coding MGP_CASTEiJ_T0086844.1 MGP_CASTEiJ_G0032050.1 mouse_genomes_project 7 123008228 123009573 - MGP_CASTEiJ_P0086844 Cd2bp2 protein_coding protein_coding MGP_CASTEiJ_T0086845.1 MGP_CASTEiJ_G0032050.1 mouse_genomes_project 7 123008698 123009657 - MGP_CASTEiJ_P0086845 Cd2bp2 protein_coding protein_coding MGP_CASTEiJ_T0085000.1 MGP_CASTEiJ_G0031505.1 mouse_genomes_project 7 80566097 80567093 + MGP_CASTEiJ_P0085000 Olfr299 protein_coding protein_coding MGP_CASTEiJ_T0083589.1 MGP_CASTEiJ_G0031165.1 mouse_genomes_project 7 35664138 35677979 - MGP_CASTEiJ_P0083589 4931406B18Rik protein_coding protein_coding MGP_CASTEiJ_T0083590.1 MGP_CASTEiJ_G0031165.1 mouse_genomes_project 7 35665881 35677675 - MGP_CASTEiJ_P0083590 4931406B18Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083591.1 MGP_CASTEiJ_G0031165.1 mouse_genomes_project 7 35666634 35677969 - MGP_CASTEiJ_P0083591 4931406B18Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083592.1 MGP_CASTEiJ_G0031165.1 mouse_genomes_project 7 35668672 35676307 - MGP_CASTEiJ_P0083592 4931406B18Rik protein_coding protein_coding MGP_CASTEiJ_T0083593.1 MGP_CASTEiJ_G0031165.1 mouse_genomes_project 7 35669816 35677975 - 4931406B18Rik protein_coding retained_intron MGP_CASTEiJ_T0083594.1 MGP_CASTEiJ_G0031165.1 mouse_genomes_project 7 35670462 35677981 - MGP_CASTEiJ_P0083594 4931406B18Rik protein_coding protein_coding MGP_CASTEiJ_T0083595.1 MGP_CASTEiJ_G0031165.1 mouse_genomes_project 7 35673370 35677736 - MGP_CASTEiJ_P0083595 4931406B18Rik protein_coding protein_coding MGP_CASTEiJ_T0085875.1 MGP_CASTEiJ_G0031827.1 mouse_genomes_project 7 102715823 102737860 - MGP_CASTEiJ_P0085875 Ovch2 protein_coding protein_coding MGP_CASTEiJ_T0102488.1 MGP_CASTEiJ_G0039213.1 mouse_genomes_project 7 10484771 10485036 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101654.1 MGP_CASTEiJ_G0038494.1 mouse_genomes_project 7 20988113 20993270 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101655.1 MGP_CASTEiJ_G0038494.1 mouse_genomes_project 7 20992497 20993052 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0081599.1 MGP_CASTEiJ_G0030629.1 mouse_genomes_project 7 1709823 1714810 - MGP_CASTEiJ_P0081599 Tmem238 protein_coding protein_coding MGP_CASTEiJ_T0081600.1 MGP_CASTEiJ_G0030629.1 mouse_genomes_project 7 1710431 1714227 - MGP_CASTEiJ_P0081600 Tmem238 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0010536.1 MGP_CASTEiJ_G0008724.1 mouse_genomes_project 7 13944203 13944301 + Mir330 miRNA miRNA MGP_CASTEiJ_T0005130.1 MGP_CASTEiJ_G0004365.1 mouse_genomes_project 7 105967915 105968782 + Gm16336 antisense antisense MGP_CASTEiJ_T0084524.1 MGP_CASTEiJ_G0031397.1 mouse_genomes_project 7 63188283 63205641 - MGP_CASTEiJ_P0084524 Nr2f2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084525.1 MGP_CASTEiJ_G0031397.1 mouse_genomes_project 7 63197239 63205858 - MGP_CASTEiJ_P0084525 Nr2f2 protein_coding protein_coding MGP_CASTEiJ_T0084526.1 MGP_CASTEiJ_G0031397.1 mouse_genomes_project 7 63199705 63211873 - MGP_CASTEiJ_P0084526 Nr2f2 protein_coding protein_coding MGP_CASTEiJ_T0002169.1 MGP_CASTEiJ_G0002089.1 mouse_genomes_project 7 56485220 56486734 + TEC TEC MGP_CASTEiJ_T0008757.1 MGP_CASTEiJ_G0007072.1 mouse_genomes_project 7 109549039 109637460 - 4933406I18Rik lincRNA lincRNA MGP_CASTEiJ_T0008758.1 MGP_CASTEiJ_G0007072.1 mouse_genomes_project 7 109590675 109637320 - 4933406I18Rik lincRNA lincRNA MGP_CASTEiJ_T0100033.1 MGP_CASTEiJ_G0036946.1 mouse_genomes_project 7 105001933 105002074 + Gm23100 snRNA snRNA MGP_CASTEiJ_T0015191.1 MGP_CASTEiJ_G0013354.1 mouse_genomes_project 7 31336345 31336877 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015237.1 MGP_CASTEiJ_G0013400.1 mouse_genomes_project 7 65977335 65978332 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008607.1 MGP_CASTEiJ_G0006967.1 mouse_genomes_project 7 26337656 26348809 - Gm45096 lincRNA lincRNA MGP_CASTEiJ_T0083905.1 MGP_CASTEiJ_G0031251.1 mouse_genomes_project 7 37878330 37881020 - MGP_CASTEiJ_P0083905 Lin7b protein_coding protein_coding MGP_CASTEiJ_T0083906.1 MGP_CASTEiJ_G0031251.1 mouse_genomes_project 7 37878332 37879039 - Lin7b protein_coding retained_intron MGP_CASTEiJ_T0083907.1 MGP_CASTEiJ_G0031251.1 mouse_genomes_project 7 37879646 37880752 - Lin7b protein_coding retained_intron MGP_CASTEiJ_T0083908.1 MGP_CASTEiJ_G0031251.1 mouse_genomes_project 7 37879700 37880622 - Lin7b protein_coding retained_intron MGP_CASTEiJ_T0083909.1 MGP_CASTEiJ_G0031251.1 mouse_genomes_project 7 37879999 37880783 - Lin7b protein_coding retained_intron MGP_CASTEiJ_T0005096.1 MGP_CASTEiJ_G0004343.1 mouse_genomes_project 7 73186811 73190525 + Gm26646 antisense antisense MGP_CASTEiJ_T0005097.1 MGP_CASTEiJ_G0004343.1 mouse_genomes_project 7 73188844 73190525 + Gm26646 antisense antisense MGP_CASTEiJ_T0010550.1 MGP_CASTEiJ_G0008738.1 mouse_genomes_project 7 22364593 22364676 + Mir1964 miRNA miRNA MGP_CASTEiJ_T0081962.1 MGP_CASTEiJ_G0030770.1 mouse_genomes_project 7 11589384 11615139 + MGP_CASTEiJ_P0081962 Strn4 protein_coding protein_coding MGP_CASTEiJ_T0081963.1 MGP_CASTEiJ_G0030770.1 mouse_genomes_project 7 11589812 11615135 + MGP_CASTEiJ_P0081963 Strn4 protein_coding protein_coding MGP_CASTEiJ_T0081964.1 MGP_CASTEiJ_G0030770.1 mouse_genomes_project 7 11589873 11602394 + MGP_CASTEiJ_P0081964 Strn4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081965.1 MGP_CASTEiJ_G0030770.1 mouse_genomes_project 7 11595628 11597766 + Strn4 protein_coding processed_transcript MGP_CASTEiJ_T0081966.1 MGP_CASTEiJ_G0030770.1 mouse_genomes_project 7 11596656 11608328 + MGP_CASTEiJ_P0081966 Strn4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081967.1 MGP_CASTEiJ_G0030770.1 mouse_genomes_project 7 11597641 11602331 + Strn4 protein_coding retained_intron MGP_CASTEiJ_T0081968.1 MGP_CASTEiJ_G0030770.1 mouse_genomes_project 7 11602358 11605961 + Strn4 protein_coding retained_intron MGP_CASTEiJ_T0081969.1 MGP_CASTEiJ_G0030770.1 mouse_genomes_project 7 11604468 11605831 + Strn4 protein_coding processed_transcript MGP_CASTEiJ_T0081970.1 MGP_CASTEiJ_G0030770.1 mouse_genomes_project 7 11605420 11612199 + MGP_CASTEiJ_P0081970 Strn4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081971.1 MGP_CASTEiJ_G0030770.1 mouse_genomes_project 7 11606967 11608344 + Strn4 protein_coding retained_intron MGP_CASTEiJ_T0081972.1 MGP_CASTEiJ_G0030770.1 mouse_genomes_project 7 11607518 11609001 + Strn4 protein_coding retained_intron MGP_CASTEiJ_T0081973.1 MGP_CASTEiJ_G0030770.1 mouse_genomes_project 7 11610652 11615139 + Strn4 protein_coding retained_intron MGP_CASTEiJ_T0081974.1 MGP_CASTEiJ_G0030770.1 mouse_genomes_project 7 11611851 11614444 + MGP_CASTEiJ_P0081974 Strn4 protein_coding protein_coding MGP_CASTEiJ_T0081975.1 MGP_CASTEiJ_G0030770.1 mouse_genomes_project 7 11612770 11614226 + Strn4 protein_coding retained_intron MGP_CASTEiJ_T0082999.1 MGP_CASTEiJ_G0031043.1 mouse_genomes_project 7 22857582 22866039 - MGP_CASTEiJ_P0082999 Tbcb protein_coding protein_coding MGP_CASTEiJ_T0083000.1 MGP_CASTEiJ_G0031043.1 mouse_genomes_project 7 22857584 22861332 - Tbcb protein_coding processed_transcript MGP_CASTEiJ_T0083001.1 MGP_CASTEiJ_G0031043.1 mouse_genomes_project 7 22857588 22861393 - Tbcb protein_coding retained_intron MGP_CASTEiJ_T0082640.1 MGP_CASTEiJ_G0030950.1 mouse_genomes_project 7 19732091 19736857 - MGP_CASTEiJ_P0082640 Gm20479 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0101284.1 MGP_CASTEiJ_G0038197.1 mouse_genomes_project 7 140647734 140647861 - Gm23297 snoRNA snoRNA MGP_CASTEiJ_T0102569.1 MGP_CASTEiJ_G0039293.1 mouse_genomes_project 7 80140136 80141034 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0087826.1 MGP_CASTEiJ_G0032275.1 mouse_genomes_project 7 139400453 139417732 - Ifitm10 protein_coding processed_transcript MGP_CASTEiJ_T0087827.1 MGP_CASTEiJ_G0032275.1 mouse_genomes_project 7 139400724 139457279 - MGP_CASTEiJ_P0087827 Ifitm10 protein_coding protein_coding MGP_CASTEiJ_T0087828.1 MGP_CASTEiJ_G0032275.1 mouse_genomes_project 7 139435820 139457097 - MGP_CASTEiJ_P0087828 Ifitm10 protein_coding protein_coding MGP_CASTEiJ_T0087829.1 MGP_CASTEiJ_G0032275.1 mouse_genomes_project 7 139436234 139458594 - MGP_CASTEiJ_P0087829 Ifitm10 protein_coding protein_coding MGP_CASTEiJ_T0087830.1 MGP_CASTEiJ_G0032275.1 mouse_genomes_project 7 139455955 139457728 - Ifitm10 protein_coding processed_transcript MGP_CASTEiJ_T0008813.1 MGP_CASTEiJ_G0007108.1 mouse_genomes_project 7 126792157 126792975 - lincRNA lincRNA MGP_CASTEiJ_T0005161.1 MGP_CASTEiJ_G0004388.1 mouse_genomes_project 7 124658238 124659368 + Gm44674 antisense antisense MGP_CASTEiJ_T0002196.1 MGP_CASTEiJ_G0002115.1 mouse_genomes_project 7 70555258 70556114 + TEC TEC MGP_CASTEiJ_T0086382.1 MGP_CASTEiJ_G0031971.1 mouse_genomes_project 7 117469621 117528785 + MGP_CASTEiJ_P0086382 Scnn1b protein_coding protein_coding MGP_CASTEiJ_T0086383.1 MGP_CASTEiJ_G0031971.1 mouse_genomes_project 7 117469660 117528787 + MGP_CASTEiJ_P0086383 Scnn1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086386.1 MGP_CASTEiJ_G0031971.1 mouse_genomes_project 7 117507511 117520164 + MGP_CASTEiJ_P0086386 Scnn1b protein_coding protein_coding MGP_CASTEiJ_T0082211.1 MGP_CASTEiJ_G0030839.1 mouse_genomes_project 7 14535375 14558648 - MGP_CASTEiJ_P0082211 Tomm40 protein_coding protein_coding MGP_CASTEiJ_T0082212.1 MGP_CASTEiJ_G0030839.1 mouse_genomes_project 7 14535391 14558635 - MGP_CASTEiJ_P0082212 Tomm40 protein_coding protein_coding MGP_CASTEiJ_T0082213.1 MGP_CASTEiJ_G0030839.1 mouse_genomes_project 7 14535882 14554160 - Tomm40 protein_coding retained_intron MGP_CASTEiJ_T0082214.1 MGP_CASTEiJ_G0030839.1 mouse_genomes_project 7 14536928 14537402 - MGP_CASTEiJ_P0082214 Tomm40 protein_coding protein_coding MGP_CASTEiJ_T0082215.1 MGP_CASTEiJ_G0030839.1 mouse_genomes_project 7 14554604 14558638 - Tomm40 protein_coding retained_intron MGP_CASTEiJ_T0084223.1 MGP_CASTEiJ_G0031337.1 mouse_genomes_project 7 44479370 44532506 + MGP_CASTEiJ_P0084223 Slc17a6 protein_coding protein_coding MGP_CASTEiJ_T0015293.1 MGP_CASTEiJ_G0013456.1 mouse_genomes_project 7 104344400 104345798 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002138.1 MGP_CASTEiJ_G0002058.1 mouse_genomes_project 7 28148400 28149322 + TEC TEC MGP_CASTEiJ_T0015175.1 MGP_CASTEiJ_G0013338.1 mouse_genomes_project 7 24081133 24081251 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102519.1 MGP_CASTEiJ_G0039243.1 mouse_genomes_project 7 36207709 36305491 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0005134.1 MGP_CASTEiJ_G0004368.1 mouse_genomes_project 7 111281586 111300226 + Gm45025 antisense antisense MGP_CASTEiJ_T0086496.1 MGP_CASTEiJ_G0031994.1 mouse_genomes_project 7 121265153 121296508 + MGP_CASTEiJ_P0086496 Il4ra protein_coding protein_coding MGP_CASTEiJ_T0086497.1 MGP_CASTEiJ_G0031994.1 mouse_genomes_project 7 121265305 121289280 + Il4ra protein_coding retained_intron MGP_CASTEiJ_T0086498.1 MGP_CASTEiJ_G0031994.1 mouse_genomes_project 7 121265305 121281110 + MGP_CASTEiJ_P0086498 Il4ra protein_coding protein_coding MGP_CASTEiJ_T0086499.1 MGP_CASTEiJ_G0031994.1 mouse_genomes_project 7 121265310 121286988 + MGP_CASTEiJ_P0086499 Il4ra protein_coding protein_coding MGP_CASTEiJ_T0086500.1 MGP_CASTEiJ_G0031994.1 mouse_genomes_project 7 121265321 121295001 + MGP_CASTEiJ_P0086500 Il4ra protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0102601.1 MGP_CASTEiJ_G0039325.1 mouse_genomes_project 7 124232387 124232581 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010579.1 MGP_CASTEiJ_G0008767.1 mouse_genomes_project 7 54299899 54299969 - Gm23873 miRNA miRNA MGP_CASTEiJ_T0085982.1 MGP_CASTEiJ_G0031883.1 mouse_genomes_project 7 105340885 105668838 - MGP_CASTEiJ_P0085982 Sbf2 protein_coding protein_coding MGP_CASTEiJ_T0085983.1 MGP_CASTEiJ_G0031883.1 mouse_genomes_project 7 105342273 105668838 - MGP_CASTEiJ_P0085983 Sbf2 protein_coding protein_coding MGP_CASTEiJ_T0085984.1 MGP_CASTEiJ_G0031883.1 mouse_genomes_project 7 105354271 105373649 - Sbf2 protein_coding retained_intron MGP_CASTEiJ_T0085985.1 MGP_CASTEiJ_G0031883.1 mouse_genomes_project 7 105363413 105397486 - MGP_CASTEiJ_P0085985 Sbf2 protein_coding protein_coding MGP_CASTEiJ_T0085986.1 MGP_CASTEiJ_G0031883.1 mouse_genomes_project 7 105372546 105385990 - Sbf2 protein_coding retained_intron MGP_CASTEiJ_T0085987.1 MGP_CASTEiJ_G0031883.1 mouse_genomes_project 7 105374690 105400928 - MGP_CASTEiJ_P0085987 Sbf2 protein_coding protein_coding MGP_CASTEiJ_T0085988.1 MGP_CASTEiJ_G0031883.1 mouse_genomes_project 7 105413540 105668991 - Sbf2 protein_coding retained_intron MGP_CASTEiJ_T0085989.1 MGP_CASTEiJ_G0031883.1 mouse_genomes_project 7 105413851 105668973 - Sbf2 protein_coding retained_intron MGP_CASTEiJ_T0085990.1 MGP_CASTEiJ_G0031883.1 mouse_genomes_project 7 105460583 105481306 - MGP_CASTEiJ_P0085990 Sbf2 protein_coding protein_coding MGP_CASTEiJ_T0085991.1 MGP_CASTEiJ_G0031883.1 mouse_genomes_project 7 105463302 105668959 - Sbf2 protein_coding retained_intron MGP_CASTEiJ_T0085992.1 MGP_CASTEiJ_G0031883.1 mouse_genomes_project 7 105480299 105668982 - MGP_CASTEiJ_P0085992 Sbf2 protein_coding protein_coding MGP_CASTEiJ_T0085993.1 MGP_CASTEiJ_G0031883.1 mouse_genomes_project 7 105480486 105500782 - MGP_CASTEiJ_P0085993 Sbf2 protein_coding protein_coding MGP_CASTEiJ_T0085994.1 MGP_CASTEiJ_G0031883.1 mouse_genomes_project 7 105500725 105668838 - MGP_CASTEiJ_P0085994 Sbf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0005105.1 MGP_CASTEiJ_G0004349.1 mouse_genomes_project 7 76249086 76261663 - 4933406J10Rik antisense antisense MGP_CASTEiJ_T0005136.1 MGP_CASTEiJ_G0004370.1 mouse_genomes_project 7 111645963 111646844 + Gm44777 antisense antisense MGP_CASTEiJ_T0005137.1 MGP_CASTEiJ_G0004370.1 mouse_genomes_project 7 111645970 111651275 + Gm44777 antisense antisense MGP_CASTEiJ_T0005138.1 MGP_CASTEiJ_G0004370.1 mouse_genomes_project 7 111648059 111651595 + Gm44777 antisense antisense MGP_CASTEiJ_T0010611.1 MGP_CASTEiJ_G0008799.1 mouse_genomes_project 7 122341171 122341230 - Mir7059 miRNA miRNA MGP_CASTEiJ_T0088018.1 MGP_CASTEiJ_G0032308.1 mouse_genomes_project 7 141646286 141728342 - MGP_CASTEiJ_P0088018 Ppfia1 protein_coding protein_coding MGP_CASTEiJ_T0088019.1 MGP_CASTEiJ_G0032308.1 mouse_genomes_project 7 141646287 141660171 - Ppfia1 protein_coding retained_intron MGP_CASTEiJ_T0088020.1 MGP_CASTEiJ_G0032308.1 mouse_genomes_project 7 141646298 141684000 - MGP_CASTEiJ_P0088020 Ppfia1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088021.1 MGP_CASTEiJ_G0032308.1 mouse_genomes_project 7 141646510 141727150 - MGP_CASTEiJ_P0088021 Ppfia1 protein_coding protein_coding MGP_CASTEiJ_T0088022.1 MGP_CASTEiJ_G0032308.1 mouse_genomes_project 7 141653243 141657600 - Ppfia1 protein_coding processed_transcript MGP_CASTEiJ_T0088023.1 MGP_CASTEiJ_G0032308.1 mouse_genomes_project 7 141669678 141671294 - Ppfia1 protein_coding retained_intron MGP_CASTEiJ_T0088024.1 MGP_CASTEiJ_G0032308.1 mouse_genomes_project 7 141676947 141679710 - Ppfia1 protein_coding retained_intron MGP_CASTEiJ_T0088025.1 MGP_CASTEiJ_G0032308.1 mouse_genomes_project 7 141689993 141726975 - MGP_CASTEiJ_P0088025 Ppfia1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088026.1 MGP_CASTEiJ_G0032308.1 mouse_genomes_project 7 141691018 141695070 - Ppfia1 protein_coding retained_intron MGP_CASTEiJ_T0017656.1 MGP_CASTEiJ_G0015000.1 mouse_genomes_project 7 104398297 104404552 + 1700095J03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0100025.1 MGP_CASTEiJ_G0036938.1 mouse_genomes_project 7 92962540 92962703 + Gm23040 snRNA snRNA MGP_CASTEiJ_T0086728.1 MGP_CASTEiJ_G0032029.1 mouse_genomes_project 7 122615362 122616387 - MGP_CASTEiJ_P0086728 4930451I11Rik protein_coding protein_coding MGP_CASTEiJ_T0086729.1 MGP_CASTEiJ_G0032029.1 mouse_genomes_project 7 122615363 122616530 - 4930451I11Rik protein_coding processed_transcript MGP_CASTEiJ_T0086730.1 MGP_CASTEiJ_G0032029.1 mouse_genomes_project 7 122615371 122616363 - MGP_CASTEiJ_P0086730 4930451I11Rik protein_coding protein_coding MGP_CASTEiJ_T0005127.1 MGP_CASTEiJ_G0004363.1 mouse_genomes_project 7 99293320 99307901 + antisense antisense MGP_CASTEiJ_T0005128.1 MGP_CASTEiJ_G0004363.1 mouse_genomes_project 7 99293321 99308072 + antisense antisense MGP_CASTEiJ_T0102513.1 MGP_CASTEiJ_G0039237.1 mouse_genomes_project 7 32824101 32825652 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0081656.1 MGP_CASTEiJ_G0030654.1 mouse_genomes_project 7 2221655 2279774 - MGP_CASTEiJ_P0081656 Nlrp2 protein_coding protein_coding MGP_CASTEiJ_T0010592.1 MGP_CASTEiJ_G0008780.1 mouse_genomes_project 7 66850677 66850729 + Mir7234 miRNA miRNA MGP_CASTEiJ_T0083705.1 MGP_CASTEiJ_G0031199.1 mouse_genomes_project 7 36916694 36923302 - MGP_CASTEiJ_P0083705 Emc10 protein_coding protein_coding MGP_CASTEiJ_T0083706.1 MGP_CASTEiJ_G0031199.1 mouse_genomes_project 7 36916868 36923179 - MGP_CASTEiJ_P0083706 Emc10 protein_coding protein_coding MGP_CASTEiJ_T0083707.1 MGP_CASTEiJ_G0031199.1 mouse_genomes_project 7 36917659 36918791 - Emc10 protein_coding retained_intron MGP_CASTEiJ_T0083708.1 MGP_CASTEiJ_G0031199.1 mouse_genomes_project 7 36918507 36923236 - Emc10 protein_coding retained_intron MGP_CASTEiJ_T0083709.1 MGP_CASTEiJ_G0031199.1 mouse_genomes_project 7 36918775 36923201 - MGP_CASTEiJ_P0083709 Emc10 protein_coding protein_coding MGP_CASTEiJ_T0083710.1 MGP_CASTEiJ_G0031199.1 mouse_genomes_project 7 36921046 36923170 - Emc10 protein_coding retained_intron MGP_CASTEiJ_T0083568.1 MGP_CASTEiJ_G0031159.1 mouse_genomes_project 7 35608282 35609459 + MGP_CASTEiJ_P0083568 Nkg7 protein_coding protein_coding MGP_CASTEiJ_T0083569.1 MGP_CASTEiJ_G0031159.1 mouse_genomes_project 7 35608339 35609456 + MGP_CASTEiJ_P0083569 Nkg7 protein_coding protein_coding MGP_CASTEiJ_T0083570.1 MGP_CASTEiJ_G0031159.1 mouse_genomes_project 7 35608713 35609459 + Nkg7 protein_coding retained_intron MGP_CASTEiJ_T0086360.1 MGP_CASTEiJ_G0031962.1 mouse_genomes_project 7 116465796 116499302 + MGP_CASTEiJ_P0086360 Polr3e protein_coding protein_coding MGP_CASTEiJ_T0086361.1 MGP_CASTEiJ_G0031962.1 mouse_genomes_project 7 116465796 116499302 + MGP_CASTEiJ_P0086361 Polr3e protein_coding protein_coding MGP_CASTEiJ_T0082796.1 MGP_CASTEiJ_G0030994.1 mouse_genomes_project 7 21243371 21272333 + MGP_CASTEiJ_P0082796 Fbxo17 protein_coding protein_coding MGP_CASTEiJ_T0082797.1 MGP_CASTEiJ_G0030994.1 mouse_genomes_project 7 21243399 21272327 + MGP_CASTEiJ_P0082797 Fbxo17 protein_coding protein_coding MGP_CASTEiJ_T0082798.1 MGP_CASTEiJ_G0030994.1 mouse_genomes_project 7 21243423 21254940 + Fbxo17 protein_coding retained_intron MGP_CASTEiJ_T0082799.1 MGP_CASTEiJ_G0030994.1 mouse_genomes_project 7 21243440 21272333 + MGP_CASTEiJ_P0082799 Fbxo17 protein_coding protein_coding MGP_CASTEiJ_T0082800.1 MGP_CASTEiJ_G0030994.1 mouse_genomes_project 7 21266728 21271671 + MGP_CASTEiJ_P0082800 Fbxo17 protein_coding protein_coding MGP_CASTEiJ_T0087150.1 MGP_CASTEiJ_G0032112.1 mouse_genomes_project 7 124531492 124599688 + Inpp5f protein_coding processed_transcript MGP_CASTEiJ_T0087151.1 MGP_CASTEiJ_G0032112.1 mouse_genomes_project 7 124531524 124626612 + MGP_CASTEiJ_P0087151 Inpp5f protein_coding protein_coding MGP_CASTEiJ_T0087152.1 MGP_CASTEiJ_G0032112.1 mouse_genomes_project 7 124585468 124605627 + Inpp5f protein_coding retained_intron MGP_CASTEiJ_T0087153.1 MGP_CASTEiJ_G0032112.1 mouse_genomes_project 7 124591686 124596572 + Inpp5f protein_coding processed_transcript MGP_CASTEiJ_T0087154.1 MGP_CASTEiJ_G0032112.1 mouse_genomes_project 7 124595691 124596777 + Inpp5f protein_coding retained_intron MGP_CASTEiJ_T0087155.1 MGP_CASTEiJ_G0032112.1 mouse_genomes_project 7 124607838 124626461 + Inpp5f protein_coding retained_intron MGP_CASTEiJ_T0087156.1 MGP_CASTEiJ_G0032112.1 mouse_genomes_project 7 124617571 124623833 + MGP_CASTEiJ_P0087156 Inpp5f protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087157.1 MGP_CASTEiJ_G0032112.1 mouse_genomes_project 7 124618324 124626463 + MGP_CASTEiJ_P0087157 Inpp5f protein_coding protein_coding MGP_CASTEiJ_T0008660.1 MGP_CASTEiJ_G0007008.1 mouse_genomes_project 7 59841872 59861657 - 1700112J16Rik lincRNA lincRNA MGP_CASTEiJ_T0083562.1 MGP_CASTEiJ_G0031155.1 mouse_genomes_project 7 35579739 35589167 + MGP_CASTEiJ_P0083562 Siglecg protein_coding protein_coding MGP_CASTEiJ_T0083563.1 MGP_CASTEiJ_G0031155.1 mouse_genomes_project 7 35579803 35589167 + Siglecg protein_coding retained_intron MGP_CASTEiJ_T0083564.1 MGP_CASTEiJ_G0031155.1 mouse_genomes_project 7 35580008 35585258 + Siglecg protein_coding retained_intron MGP_CASTEiJ_T0086332.1 MGP_CASTEiJ_G0031956.1 mouse_genomes_project 7 116154773 116179402 + MGP_CASTEiJ_P0086332 Uqcrc2 protein_coding protein_coding MGP_CASTEiJ_T0086333.1 MGP_CASTEiJ_G0031956.1 mouse_genomes_project 7 116154837 116162817 + Uqcrc2 protein_coding processed_transcript MGP_CASTEiJ_T0086334.1 MGP_CASTEiJ_G0031956.1 mouse_genomes_project 7 116155112 116165060 + Uqcrc2 protein_coding processed_transcript MGP_CASTEiJ_T0086335.1 MGP_CASTEiJ_G0031956.1 mouse_genomes_project 7 116157249 116179087 + Uqcrc2 protein_coding processed_transcript MGP_CASTEiJ_T0086336.1 MGP_CASTEiJ_G0031956.1 mouse_genomes_project 7 116164737 116170810 + Uqcrc2 protein_coding retained_intron MGP_CASTEiJ_T0086337.1 MGP_CASTEiJ_G0031956.1 mouse_genomes_project 7 116171173 116177784 + Uqcrc2 protein_coding retained_intron MGP_CASTEiJ_T0082230.1 MGP_CASTEiJ_G0030843.1 mouse_genomes_project 7 14674883 14677541 - MGP_CASTEiJ_P0082230 Bcl3 protein_coding protein_coding MGP_CASTEiJ_T0082231.1 MGP_CASTEiJ_G0030843.1 mouse_genomes_project 7 14674883 14689284 - MGP_CASTEiJ_P0082231 Bcl3 protein_coding protein_coding MGP_CASTEiJ_T0082232.1 MGP_CASTEiJ_G0030843.1 mouse_genomes_project 7 14677536 14678309 - Bcl3 protein_coding retained_intron MGP_CASTEiJ_T0082233.1 MGP_CASTEiJ_G0030843.1 mouse_genomes_project 7 14677768 14679253 - Bcl3 protein_coding retained_intron MGP_CASTEiJ_T0082234.1 MGP_CASTEiJ_G0030843.1 mouse_genomes_project 7 14677914 14682537 - Bcl3 protein_coding processed_transcript MGP_CASTEiJ_T0082235.1 MGP_CASTEiJ_G0030843.1 mouse_genomes_project 7 14678005 14688671 - MGP_CASTEiJ_P0082235 Bcl3 protein_coding protein_coding MGP_CASTEiJ_T0082236.1 MGP_CASTEiJ_G0030843.1 mouse_genomes_project 7 14678814 14689284 - Bcl3 protein_coding processed_transcript MGP_CASTEiJ_T0011349.1 MGP_CASTEiJ_G0009537.1 mouse_genomes_project 7 18184809 18184916 + Gm23921 misc_RNA misc_RNA MGP_CASTEiJ_T0101225.1 MGP_CASTEiJ_G0038138.1 mouse_genomes_project 7 20835646 20835771 + AF357399 snoRNA snoRNA MGP_CASTEiJ_T0082419.1 MGP_CASTEiJ_G0030898.1 mouse_genomes_project 7 17345056 17350962 + Zfp574 protein_coding processed_transcript MGP_CASTEiJ_T0082420.1 MGP_CASTEiJ_G0030898.1 mouse_genomes_project 7 17345135 17351321 + Zfp574 protein_coding processed_transcript MGP_CASTEiJ_T0082421.1 MGP_CASTEiJ_G0030898.1 mouse_genomes_project 7 17351150 17357439 + MGP_CASTEiJ_P0082421 Zfp574 protein_coding protein_coding MGP_CASTEiJ_T0082422.1 MGP_CASTEiJ_G0030898.1 mouse_genomes_project 7 17351229 17356426 + MGP_CASTEiJ_P0082422 Zfp574 protein_coding protein_coding MGP_CASTEiJ_T0084932.1 MGP_CASTEiJ_G0031475.1 mouse_genomes_project 7 76139596 76156935 - MGP_CASTEiJ_P0084932 Saxo2 protein_coding protein_coding MGP_CASTEiJ_T0084933.1 MGP_CASTEiJ_G0031475.1 mouse_genomes_project 7 76141100 76156841 - MGP_CASTEiJ_P0084933 Saxo2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084934.1 MGP_CASTEiJ_G0031475.1 mouse_genomes_project 7 76141924 76156935 - Saxo2 protein_coding processed_transcript MGP_CASTEiJ_T0084935.1 MGP_CASTEiJ_G0031475.1 mouse_genomes_project 7 76149496 76156940 - Saxo2 protein_coding retained_intron MGP_CASTEiJ_T0084936.1 MGP_CASTEiJ_G0031475.1 mouse_genomes_project 7 76154590 76156940 - Saxo2 protein_coding processed_transcript MGP_CASTEiJ_T0082098.1 MGP_CASTEiJ_G0030809.1 mouse_genomes_project 7 13916886 13926750 - MGP_CASTEiJ_P0082098 Gipr protein_coding protein_coding MGP_CASTEiJ_T0082099.1 MGP_CASTEiJ_G0030809.1 mouse_genomes_project 7 13916889 13926750 - Gipr protein_coding retained_intron MGP_CASTEiJ_T0082100.1 MGP_CASTEiJ_G0030809.1 mouse_genomes_project 7 13922910 13926750 - MGP_CASTEiJ_P0082100 Gipr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082101.1 MGP_CASTEiJ_G0030809.1 mouse_genomes_project 7 13923077 13925713 - Gipr protein_coding retained_intron MGP_CASTEiJ_T0082254.1 MGP_CASTEiJ_G0030856.1 mouse_genomes_project 7 15773495 15773965 + MGP_CASTEiJ_P0082254 protein_coding protein_coding MGP_CASTEiJ_T0087641.1 MGP_CASTEiJ_G0032243.1 mouse_genomes_project 7 138185461 138189498 - MGP_CASTEiJ_P0087641 Lmntd2 protein_coding protein_coding MGP_CASTEiJ_T0087642.1 MGP_CASTEiJ_G0032243.1 mouse_genomes_project 7 138185461 138189500 - MGP_CASTEiJ_P0087642 Lmntd2 protein_coding protein_coding MGP_CASTEiJ_T0084116.1 MGP_CASTEiJ_G0031304.1 mouse_genomes_project 7 39430668 39469265 - MGP_CASTEiJ_P0084116 Hps5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084117.1 MGP_CASTEiJ_G0031304.1 mouse_genomes_project 7 39430668 39469614 - MGP_CASTEiJ_P0084117 Hps5 protein_coding protein_coding MGP_CASTEiJ_T0084118.1 MGP_CASTEiJ_G0031304.1 mouse_genomes_project 7 39430668 39469586 - MGP_CASTEiJ_P0084118 Hps5 protein_coding protein_coding MGP_CASTEiJ_T0084119.1 MGP_CASTEiJ_G0031304.1 mouse_genomes_project 7 39430674 39469468 - MGP_CASTEiJ_P0084119 Hps5 protein_coding protein_coding MGP_CASTEiJ_T0084120.1 MGP_CASTEiJ_G0031304.1 mouse_genomes_project 7 39431190 39469265 - Hps5 protein_coding retained_intron MGP_CASTEiJ_T0084121.1 MGP_CASTEiJ_G0031304.1 mouse_genomes_project 7 39431440 39440435 - Hps5 protein_coding processed_transcript MGP_CASTEiJ_T0084122.1 MGP_CASTEiJ_G0031304.1 mouse_genomes_project 7 39433151 39446645 - MGP_CASTEiJ_P0084122 Hps5 protein_coding protein_coding MGP_CASTEiJ_T0084123.1 MGP_CASTEiJ_G0031304.1 mouse_genomes_project 7 39435085 39443755 - MGP_CASTEiJ_P0084123 Hps5 protein_coding protein_coding MGP_CASTEiJ_T0084124.1 MGP_CASTEiJ_G0031304.1 mouse_genomes_project 7 39437147 39438629 - Hps5 protein_coding retained_intron MGP_CASTEiJ_T0084125.1 MGP_CASTEiJ_G0031304.1 mouse_genomes_project 7 39447573 39450204 - Hps5 protein_coding retained_intron MGP_CASTEiJ_T0084126.1 MGP_CASTEiJ_G0031304.1 mouse_genomes_project 7 39458341 39469651 - MGP_CASTEiJ_P0084126 Hps5 protein_coding protein_coding MGP_CASTEiJ_T0084127.1 MGP_CASTEiJ_G0031304.1 mouse_genomes_project 7 39459958 39469290 - MGP_CASTEiJ_P0084127 Hps5 protein_coding protein_coding MGP_CASTEiJ_T0084128.1 MGP_CASTEiJ_G0031304.1 mouse_genomes_project 7 39460741 39462808 - Hps5 protein_coding processed_transcript MGP_CASTEiJ_T0085032.1 MGP_CASTEiJ_G0031521.1 mouse_genomes_project 7 83268869 83475793 - MGP_CASTEiJ_P0085032 Tmem135 protein_coding protein_coding MGP_CASTEiJ_T0085033.1 MGP_CASTEiJ_G0031521.1 mouse_genomes_project 7 83271003 83283035 - Tmem135 protein_coding retained_intron MGP_CASTEiJ_T0085034.1 MGP_CASTEiJ_G0031521.1 mouse_genomes_project 7 83275175 83475766 - MGP_CASTEiJ_P0085034 Tmem135 protein_coding protein_coding MGP_CASTEiJ_T0085035.1 MGP_CASTEiJ_G0031521.1 mouse_genomes_project 7 83285206 83537814 - Tmem135 protein_coding processed_transcript MGP_CASTEiJ_T0085036.1 MGP_CASTEiJ_G0031521.1 mouse_genomes_project 7 83287758 83431036 - Tmem135 protein_coding processed_transcript MGP_CASTEiJ_T0081708.1 MGP_CASTEiJ_G0030679.1 mouse_genomes_project 7 3661645 3689519 - MGP_CASTEiJ_P0081708 Peg3 protein_coding protein_coding MGP_CASTEiJ_T0081709.1 MGP_CASTEiJ_G0030679.1 mouse_genomes_project 7 3665168 3689364 - MGP_CASTEiJ_P0081709 Peg3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0081710.1 MGP_CASTEiJ_G0030679.1 mouse_genomes_project 7 3667144 3689517 - MGP_CASTEiJ_P0081710 Peg3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081711.1 MGP_CASTEiJ_G0030679.1 mouse_genomes_project 7 3669445 3682370 - MGP_CASTEiJ_P0081711 Peg3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081712.1 MGP_CASTEiJ_G0030679.1 mouse_genomes_project 7 3681088 3689517 - Peg3 protein_coding retained_intron MGP_CASTEiJ_T0085833.1 MGP_CASTEiJ_G0031793.1 mouse_genomes_project 7 101525419 101537648 - MGP_CASTEiJ_P0085833 protein_coding protein_coding MGP_CASTEiJ_T0084877.1 MGP_CASTEiJ_G0031460.1 mouse_genomes_project 7 74784891 74895416 - MGP_CASTEiJ_P0084877 Cpeb1 protein_coding protein_coding MGP_CASTEiJ_T0084878.1 MGP_CASTEiJ_G0031460.1 mouse_genomes_project 7 74784893 74873555 - MGP_CASTEiJ_P0084878 Cpeb1 protein_coding protein_coding MGP_CASTEiJ_T0084879.1 MGP_CASTEiJ_G0031460.1 mouse_genomes_project 7 74784894 74895416 - MGP_CASTEiJ_P0084879 Cpeb1 protein_coding protein_coding MGP_CASTEiJ_T0084880.1 MGP_CASTEiJ_G0031460.1 mouse_genomes_project 7 74787179 74788377 - Cpeb1 protein_coding retained_intron MGP_CASTEiJ_T0084881.1 MGP_CASTEiJ_G0031460.1 mouse_genomes_project 7 74787468 74793858 - Cpeb1 protein_coding processed_transcript MGP_CASTEiJ_T0084882.1 MGP_CASTEiJ_G0031460.1 mouse_genomes_project 7 74801007 74811762 - Cpeb1 protein_coding retained_intron MGP_CASTEiJ_T0084883.1 MGP_CASTEiJ_G0031460.1 mouse_genomes_project 7 74801007 74896122 - Cpeb1 protein_coding processed_transcript MGP_CASTEiJ_T0084884.1 MGP_CASTEiJ_G0031460.1 mouse_genomes_project 7 74801171 74811806 - Cpeb1 protein_coding processed_transcript MGP_CASTEiJ_T0084885.1 MGP_CASTEiJ_G0031460.1 mouse_genomes_project 7 74873401 74896049 - Cpeb1 protein_coding processed_transcript MGP_CASTEiJ_T0082302.1 MGP_CASTEiJ_G0030871.1 mouse_genomes_project 7 16515873 16521964 + MGP_CASTEiJ_P0082302 Lypd5 protein_coding protein_coding MGP_CASTEiJ_T0083678.1 MGP_CASTEiJ_G0031196.1 mouse_genomes_project 7 36845520 36885545 + MGP_CASTEiJ_P0083678 Lrrc4b protein_coding protein_coding MGP_CASTEiJ_T0083679.1 MGP_CASTEiJ_G0031196.1 mouse_genomes_project 7 36863590 36887535 + MGP_CASTEiJ_P0083679 Lrrc4b protein_coding protein_coding MGP_CASTEiJ_T0083680.1 MGP_CASTEiJ_G0031196.1 mouse_genomes_project 7 36863842 36885591 + MGP_CASTEiJ_P0083680 Lrrc4b protein_coding protein_coding MGP_CASTEiJ_T0005168.1 MGP_CASTEiJ_G0004393.1 mouse_genomes_project 7 129220716 129224678 - Gm15718 antisense antisense MGP_CASTEiJ_T0005181.1 MGP_CASTEiJ_G0004403.1 mouse_genomes_project 7 141745950 141762883 + Faddos antisense antisense MGP_CASTEiJ_T0084470.1 MGP_CASTEiJ_G0031387.1 mouse_genomes_project 7 59355175 59436085 + MGP_CASTEiJ_P0084470 Cers3 protein_coding protein_coding MGP_CASTEiJ_T0081932.1 MGP_CASTEiJ_G0030759.1 mouse_genomes_project 7 11041925 11050550 + MGP_CASTEiJ_P0081932 Bbc3 protein_coding protein_coding MGP_CASTEiJ_T0081933.1 MGP_CASTEiJ_G0030759.1 mouse_genomes_project 7 11042765 11046093 + MGP_CASTEiJ_P0081933 Bbc3 protein_coding protein_coding MGP_CASTEiJ_T0081934.1 MGP_CASTEiJ_G0030759.1 mouse_genomes_project 7 11045871 11050043 + Bbc3 protein_coding processed_transcript MGP_CASTEiJ_T0085259.1 MGP_CASTEiJ_G0031573.1 mouse_genomes_project 7 93725351 93747653 - MGP_CASTEiJ_P0085259 Mogat2 protein_coding protein_coding MGP_CASTEiJ_T0085260.1 MGP_CASTEiJ_G0031573.1 mouse_genomes_project 7 93732832 93747628 - Mogat2 protein_coding processed_transcript MGP_CASTEiJ_T0008588.1 MGP_CASTEiJ_G0006950.1 mouse_genomes_project 7 17218263 17221616 + Gm44970 lincRNA lincRNA MGP_CASTEiJ_T0082807.1 MGP_CASTEiJ_G0030998.1 mouse_genomes_project 7 21293301 21301711 - MGP_CASTEiJ_P0082807 Nfkbib protein_coding protein_coding MGP_CASTEiJ_T0082808.1 MGP_CASTEiJ_G0030998.1 mouse_genomes_project 7 21294082 21301585 - MGP_CASTEiJ_P0082808 Nfkbib protein_coding protein_coding MGP_CASTEiJ_T0082809.1 MGP_CASTEiJ_G0030998.1 mouse_genomes_project 7 21296832 21302583 - MGP_CASTEiJ_P0082809 Nfkbib protein_coding protein_coding MGP_CASTEiJ_T0082810.1 MGP_CASTEiJ_G0030999.1 mouse_genomes_project 7 21301805 21325375 + Sirt2 protein_coding processed_transcript MGP_CASTEiJ_T0082811.1 MGP_CASTEiJ_G0030999.1 mouse_genomes_project 7 21301822 21325380 + MGP_CASTEiJ_P0082811 Sirt2 protein_coding protein_coding MGP_CASTEiJ_T0082812.1 MGP_CASTEiJ_G0030999.1 mouse_genomes_project 7 21301837 21325375 + MGP_CASTEiJ_P0082812 Sirt2 protein_coding protein_coding MGP_CASTEiJ_T0082813.1 MGP_CASTEiJ_G0030999.1 mouse_genomes_project 7 21302324 21325375 + Sirt2 protein_coding processed_transcript MGP_CASTEiJ_T0082814.1 MGP_CASTEiJ_G0030999.1 mouse_genomes_project 7 21312723 21313613 + Sirt2 protein_coding retained_intron MGP_CASTEiJ_T0082815.1 MGP_CASTEiJ_G0030999.1 mouse_genomes_project 7 21312873 21320082 + Sirt2 protein_coding retained_intron MGP_CASTEiJ_T0082816.1 MGP_CASTEiJ_G0030999.1 mouse_genomes_project 7 21321367 21324514 + Sirt2 protein_coding processed_transcript MGP_CASTEiJ_T0082817.1 MGP_CASTEiJ_G0030999.1 mouse_genomes_project 7 21322128 21324373 + Sirt2 protein_coding retained_intron MGP_CASTEiJ_T0082818.1 MGP_CASTEiJ_G0030999.1 mouse_genomes_project 7 21322302 21325007 + Sirt2 protein_coding retained_intron MGP_CASTEiJ_T0085763.1 MGP_CASTEiJ_G0031782.1 mouse_genomes_project 7 100720298 100751844 - MGP_CASTEiJ_P0085763 Trim3 protein_coding protein_coding MGP_CASTEiJ_T0085764.1 MGP_CASTEiJ_G0031782.1 mouse_genomes_project 7 100726332 100751896 - MGP_CASTEiJ_P0085764 Trim3 protein_coding protein_coding MGP_CASTEiJ_T0085765.1 MGP_CASTEiJ_G0031782.1 mouse_genomes_project 7 100726717 100751873 - MGP_CASTEiJ_P0085765 Trim3 protein_coding protein_coding MGP_CASTEiJ_T0085766.1 MGP_CASTEiJ_G0031782.1 mouse_genomes_project 7 100727208 100727912 - Trim3 protein_coding retained_intron MGP_CASTEiJ_T0085767.1 MGP_CASTEiJ_G0031782.1 mouse_genomes_project 7 100728363 100729461 - Trim3 protein_coding retained_intron MGP_CASTEiJ_T0085768.1 MGP_CASTEiJ_G0031782.1 mouse_genomes_project 7 100733086 100734082 - Trim3 protein_coding retained_intron MGP_CASTEiJ_T0085769.1 MGP_CASTEiJ_G0031782.1 mouse_genomes_project 7 100734839 100751861 - MGP_CASTEiJ_P0085769 Trim3 protein_coding protein_coding MGP_CASTEiJ_T0085770.1 MGP_CASTEiJ_G0031782.1 mouse_genomes_project 7 100735161 100751907 - Trim3 protein_coding processed_transcript MGP_CASTEiJ_T0085771.1 MGP_CASTEiJ_G0031782.1 mouse_genomes_project 7 100735438 100751821 - MGP_CASTEiJ_P0085771 Trim3 protein_coding protein_coding MGP_CASTEiJ_T0102578.1 MGP_CASTEiJ_G0039302.1 mouse_genomes_project 7 83869778 83869991 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002133.1 MGP_CASTEiJ_G0002053.1 mouse_genomes_project 7 25464572 25465679 - TEC TEC MGP_CASTEiJ_T0085568.1 MGP_CASTEiJ_G0031638.1 mouse_genomes_project 7 97262845 97265137 - MGP_CASTEiJ_P0085568 Olfr545 protein_coding protein_coding MGP_CASTEiJ_T0082029.1 MGP_CASTEiJ_G0030790.1 mouse_genomes_project 7 12916961 12947653 + MGP_CASTEiJ_P0082029 Mill1 protein_coding protein_coding MGP_CASTEiJ_T0084896.1 MGP_CASTEiJ_G0031465.1 mouse_genomes_project 7 75051011 75154427 - MGP_CASTEiJ_P0084896 Homer2 protein_coding protein_coding MGP_CASTEiJ_T0084899.1 MGP_CASTEiJ_G0031467.1 mouse_genomes_project 7 75247253 75254041 - MGP_CASTEiJ_P0084899 3110040N11Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0084900.1 MGP_CASTEiJ_G0031467.1 mouse_genomes_project 7 75247305 75254085 - MGP_CASTEiJ_P0084900 3110040N11Rik protein_coding protein_coding MGP_CASTEiJ_T0084901.1 MGP_CASTEiJ_G0031467.1 mouse_genomes_project 7 75247782 75253264 - 3110040N11Rik protein_coding processed_transcript MGP_CASTEiJ_T0084902.1 MGP_CASTEiJ_G0031467.1 mouse_genomes_project 7 75247782 75254076 - 3110040N11Rik protein_coding processed_transcript MGP_CASTEiJ_T0084903.1 MGP_CASTEiJ_G0031467.1 mouse_genomes_project 7 75247801 75253704 - 3110040N11Rik protein_coding processed_transcript MGP_CASTEiJ_T0084904.1 MGP_CASTEiJ_G0031467.1 mouse_genomes_project 7 75247855 75254072 - MGP_CASTEiJ_P0084904 3110040N11Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082620.1 MGP_CASTEiJ_G0030947.1 mouse_genomes_project 7 19677562 19714795 - MGP_CASTEiJ_P0082620 Ltbp4 protein_coding protein_coding MGP_CASTEiJ_T0082621.1 MGP_CASTEiJ_G0030947.1 mouse_genomes_project 7 19677566 19710795 - MGP_CASTEiJ_P0082621 Ltbp4 protein_coding protein_coding MGP_CASTEiJ_T0082622.1 MGP_CASTEiJ_G0030947.1 mouse_genomes_project 7 19677568 19714795 - MGP_CASTEiJ_P0082622 Ltbp4 protein_coding protein_coding MGP_CASTEiJ_T0082623.1 MGP_CASTEiJ_G0030947.1 mouse_genomes_project 7 19678411 19710745 - MGP_CASTEiJ_P0082623 Ltbp4 protein_coding protein_coding MGP_CASTEiJ_T0082624.1 MGP_CASTEiJ_G0030947.1 mouse_genomes_project 7 19678492 19679388 - Ltbp4 protein_coding retained_intron MGP_CASTEiJ_T0082625.1 MGP_CASTEiJ_G0030947.1 mouse_genomes_project 7 19679040 19685658 - MGP_CASTEiJ_P0082625 Ltbp4 protein_coding protein_coding MGP_CASTEiJ_T0082626.1 MGP_CASTEiJ_G0030947.1 mouse_genomes_project 7 19679977 19685677 - Ltbp4 protein_coding retained_intron MGP_CASTEiJ_T0082627.1 MGP_CASTEiJ_G0030947.1 mouse_genomes_project 7 19681379 19685461 - Ltbp4 protein_coding retained_intron MGP_CASTEiJ_T0082628.1 MGP_CASTEiJ_G0030947.1 mouse_genomes_project 7 19686537 19710780 - Ltbp4 protein_coding processed_transcript MGP_CASTEiJ_T0087959.1 MGP_CASTEiJ_G0032294.1 mouse_genomes_project 7 140586134 140588706 + Slc22a18 protein_coding processed_transcript MGP_CASTEiJ_T0087960.1 MGP_CASTEiJ_G0032294.1 mouse_genomes_project 7 140586149 140614810 + MGP_CASTEiJ_P0087960 Slc22a18 protein_coding protein_coding MGP_CASTEiJ_T0087961.1 MGP_CASTEiJ_G0032294.1 mouse_genomes_project 7 140586181 140612536 + MGP_CASTEiJ_P0087961 Slc22a18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087962.1 MGP_CASTEiJ_G0032294.1 mouse_genomes_project 7 140586193 140614810 + MGP_CASTEiJ_P0087962 Slc22a18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087963.1 MGP_CASTEiJ_G0032294.1 mouse_genomes_project 7 140586218 140612537 + MGP_CASTEiJ_P0087963 Slc22a18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087964.1 MGP_CASTEiJ_G0032294.1 mouse_genomes_project 7 140587524 140614801 + MGP_CASTEiJ_P0087964 Slc22a18 protein_coding protein_coding MGP_CASTEiJ_T0084733.1 MGP_CASTEiJ_G0031437.1 mouse_genomes_project 7 73541509 73552616 + MGP_CASTEiJ_P0084733 Gdpgp1 protein_coding protein_coding MGP_CASTEiJ_T0085618.1 MGP_CASTEiJ_G0031684.1 mouse_genomes_project 7 98256430 98257390 + MGP_CASTEiJ_P0085618 Olfr606 protein_coding protein_coding MGP_CASTEiJ_T0086099.1 MGP_CASTEiJ_G0031905.1 mouse_genomes_project 7 109268998 109347672 - MGP_CASTEiJ_P0086099 Rras2 protein_coding protein_coding MGP_CASTEiJ_T0086100.1 MGP_CASTEiJ_G0031905.1 mouse_genomes_project 7 109272102 109347394 - MGP_CASTEiJ_P0086100 Rras2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0005093.1 MGP_CASTEiJ_G0004341.1 mouse_genomes_project 7 72969269 72971352 + 9330171B17Rik antisense antisense MGP_CASTEiJ_T0005094.1 MGP_CASTEiJ_G0004341.1 mouse_genomes_project 7 72969357 72971354 + 9330171B17Rik antisense antisense MGP_CASTEiJ_T0082369.1 MGP_CASTEiJ_G0030891.1 mouse_genomes_project 7 17144843 17150972 + MGP_CASTEiJ_P0082369 Rps19 protein_coding protein_coding MGP_CASTEiJ_T0082370.1 MGP_CASTEiJ_G0030891.1 mouse_genomes_project 7 17145105 17150972 + MGP_CASTEiJ_P0082370 Rps19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082371.1 MGP_CASTEiJ_G0030891.1 mouse_genomes_project 7 17145107 17148221 + Rps19 protein_coding retained_intron MGP_CASTEiJ_T0082372.1 MGP_CASTEiJ_G0030891.1 mouse_genomes_project 7 17145108 17150968 + MGP_CASTEiJ_P0082372 Rps19 protein_coding protein_coding MGP_CASTEiJ_T0082373.1 MGP_CASTEiJ_G0030891.1 mouse_genomes_project 7 17145123 17150091 + MGP_CASTEiJ_P0082373 Rps19 protein_coding protein_coding MGP_CASTEiJ_T0082374.1 MGP_CASTEiJ_G0030891.1 mouse_genomes_project 7 17145186 17150972 + MGP_CASTEiJ_P0082374 Rps19 protein_coding protein_coding MGP_CASTEiJ_T0082375.1 MGP_CASTEiJ_G0030891.1 mouse_genomes_project 7 17145285 17150071 + MGP_CASTEiJ_P0082375 Rps19 protein_coding protein_coding MGP_CASTEiJ_T0082376.1 MGP_CASTEiJ_G0030891.1 mouse_genomes_project 7 17145389 17150113 + MGP_CASTEiJ_P0082376 Rps19 protein_coding protein_coding MGP_CASTEiJ_T0082377.1 MGP_CASTEiJ_G0030891.1 mouse_genomes_project 7 17148650 17150970 + Rps19 protein_coding retained_intron MGP_CASTEiJ_T0082378.1 MGP_CASTEiJ_G0030891.1 mouse_genomes_project 7 17149883 17150970 + Rps19 protein_coding processed_transcript MGP_CASTEiJ_T0086216.1 MGP_CASTEiJ_G0031924.1 mouse_genomes_project 7 113909345 113917220 - MGP_CASTEiJ_P0086216 Itpripl2 protein_coding protein_coding MGP_CASTEiJ_T0100035.1 MGP_CASTEiJ_G0036948.1 mouse_genomes_project 7 112025336 112025443 - Gm25423 snRNA snRNA MGP_CASTEiJ_T0017621.1 MGP_CASTEiJ_G0014988.1 mouse_genomes_project 7 48848479 48859484 - Gm34121 processed_transcript lincRNA MGP_CASTEiJ_T0017622.1 MGP_CASTEiJ_G0014988.1 mouse_genomes_project 7 48855876 48859449 - Gm34121 processed_transcript retained_intron MGP_CASTEiJ_T0086789.1 MGP_CASTEiJ_G0032038.1 mouse_genomes_project 7 122767106 122770915 + MGP_CASTEiJ_P0086789 Cdipt protein_coding protein_coding MGP_CASTEiJ_T0086790.1 MGP_CASTEiJ_G0032038.1 mouse_genomes_project 7 122767164 122772023 + MGP_CASTEiJ_P0086790 Cdipt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086791.1 MGP_CASTEiJ_G0032038.1 mouse_genomes_project 7 122767186 122772025 + MGP_CASTEiJ_P0086791 Cdipt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086792.1 MGP_CASTEiJ_G0032038.1 mouse_genomes_project 7 122767316 122771168 + MGP_CASTEiJ_P0086792 Cdipt protein_coding protein_coding MGP_CASTEiJ_T0086793.1 MGP_CASTEiJ_G0032038.1 mouse_genomes_project 7 122767458 122771554 + MGP_CASTEiJ_P0086793 Cdipt protein_coding protein_coding MGP_CASTEiJ_T0086794.1 MGP_CASTEiJ_G0032038.1 mouse_genomes_project 7 122767492 122772029 + MGP_CASTEiJ_P0086794 Cdipt protein_coding protein_coding MGP_CASTEiJ_T0086795.1 MGP_CASTEiJ_G0032038.1 mouse_genomes_project 7 122769744 122770992 + Cdipt protein_coding retained_intron MGP_CASTEiJ_T0002243.1 MGP_CASTEiJ_G0002162.1 mouse_genomes_project 7 123872776 123876099 + TEC TEC MGP_CASTEiJ_T0085453.1 MGP_CASTEiJ_G0031615.1 mouse_genomes_project 7 96533833 96550025 - MGP_CASTEiJ_P0085453 Inppl1 protein_coding protein_coding MGP_CASTEiJ_T0085454.1 MGP_CASTEiJ_G0031615.1 mouse_genomes_project 7 96533840 96549721 - MGP_CASTEiJ_P0085454 Inppl1 protein_coding protein_coding MGP_CASTEiJ_T0085455.1 MGP_CASTEiJ_G0031615.1 mouse_genomes_project 7 96533854 96540567 - Inppl1 protein_coding processed_transcript MGP_CASTEiJ_T0085456.1 MGP_CASTEiJ_G0031615.1 mouse_genomes_project 7 96535242 96549702 - MGP_CASTEiJ_P0085456 Inppl1 protein_coding protein_coding MGP_CASTEiJ_T0102542.1 MGP_CASTEiJ_G0039266.1 mouse_genomes_project 7 41047720 41049068 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0086648.1 MGP_CASTEiJ_G0032018.1 mouse_genomes_project 7 122434143 122436863 - MGP_CASTEiJ_P0086648 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0086731.1 MGP_CASTEiJ_G0032030.1 mouse_genomes_project 7 122632627 122634745 + MGP_CASTEiJ_P0086731 Doc2a protein_coding protein_coding MGP_CASTEiJ_T0086732.1 MGP_CASTEiJ_G0032030.1 mouse_genomes_project 7 122632764 122637925 + MGP_CASTEiJ_P0086732 Doc2a protein_coding protein_coding MGP_CASTEiJ_T0086733.1 MGP_CASTEiJ_G0032030.1 mouse_genomes_project 7 122632849 122633972 + Doc2a protein_coding processed_transcript MGP_CASTEiJ_T0086734.1 MGP_CASTEiJ_G0032030.1 mouse_genomes_project 7 122632909 122633912 + MGP_CASTEiJ_P0086734 Doc2a protein_coding protein_coding MGP_CASTEiJ_T0086735.1 MGP_CASTEiJ_G0032030.1 mouse_genomes_project 7 122632937 122636559 + MGP_CASTEiJ_P0086735 Doc2a protein_coding protein_coding MGP_CASTEiJ_T0086736.1 MGP_CASTEiJ_G0032030.1 mouse_genomes_project 7 122633138 122634056 + MGP_CASTEiJ_P0086736 Doc2a protein_coding protein_coding MGP_CASTEiJ_T0086737.1 MGP_CASTEiJ_G0032030.1 mouse_genomes_project 7 122633173 122634055 + MGP_CASTEiJ_P0086737 Doc2a protein_coding protein_coding MGP_CASTEiJ_T0086738.1 MGP_CASTEiJ_G0032030.1 mouse_genomes_project 7 122633474 122634980 + MGP_CASTEiJ_P0086738 Doc2a protein_coding protein_coding MGP_CASTEiJ_T0086739.1 MGP_CASTEiJ_G0032030.1 mouse_genomes_project 7 122634016 122637256 + MGP_CASTEiJ_P0086739 Doc2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0005072.1 MGP_CASTEiJ_G0004325.1 mouse_genomes_project 7 36767924 36768649 + Gm44780 antisense antisense MGP_CASTEiJ_T0087467.1 MGP_CASTEiJ_G0032180.1 mouse_genomes_project 7 136714802 136766652 + MGP_CASTEiJ_P0087467 Adgra1 protein_coding protein_coding MGP_CASTEiJ_T0087468.1 MGP_CASTEiJ_G0032180.1 mouse_genomes_project 7 136714993 136726436 + Adgra1 protein_coding processed_transcript MGP_CASTEiJ_T0087469.1 MGP_CASTEiJ_G0032180.1 mouse_genomes_project 7 136715590 136721880 + Adgra1 protein_coding retained_intron MGP_CASTEiJ_T0002248.1 MGP_CASTEiJ_G0002167.1 mouse_genomes_project 7 140226411 140226472 + TEC TEC MGP_CASTEiJ_T0100024.1 MGP_CASTEiJ_G0036937.1 mouse_genomes_project 7 91326460 91326569 - Gm22226 snRNA snRNA MGP_CASTEiJ_T0085326.1 MGP_CASTEiJ_G0031595.1 mouse_genomes_project 7 94964567 95067566 + MGP_CASTEiJ_P0085326 C2cd3 protein_coding protein_coding MGP_CASTEiJ_T0085327.1 MGP_CASTEiJ_G0031595.1 mouse_genomes_project 7 94964567 95068260 + MGP_CASTEiJ_P0085327 C2cd3 protein_coding protein_coding MGP_CASTEiJ_T0085328.1 MGP_CASTEiJ_G0031595.1 mouse_genomes_project 7 94964580 95016983 + MGP_CASTEiJ_P0085328 C2cd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085329.1 MGP_CASTEiJ_G0031595.1 mouse_genomes_project 7 94964615 95000828 + C2cd3 protein_coding retained_intron MGP_CASTEiJ_T0085330.1 MGP_CASTEiJ_G0031595.1 mouse_genomes_project 7 94989001 95052510 + MGP_CASTEiJ_P0085330 C2cd3 protein_coding protein_coding MGP_CASTEiJ_T0085331.1 MGP_CASTEiJ_G0031595.1 mouse_genomes_project 7 95014079 95016695 + C2cd3 protein_coding retained_intron MGP_CASTEiJ_T0085332.1 MGP_CASTEiJ_G0031595.1 mouse_genomes_project 7 95026128 95029322 + MGP_CASTEiJ_P0085332 C2cd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085333.1 MGP_CASTEiJ_G0031595.1 mouse_genomes_project 7 95027156 95068262 + MGP_CASTEiJ_P0085333 C2cd3 protein_coding protein_coding MGP_CASTEiJ_T0085334.1 MGP_CASTEiJ_G0031595.1 mouse_genomes_project 7 95040400 95041803 + C2cd3 protein_coding retained_intron MGP_CASTEiJ_T0085335.1 MGP_CASTEiJ_G0031595.1 mouse_genomes_project 7 95047742 95052899 + MGP_CASTEiJ_P0085335 C2cd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085336.1 MGP_CASTEiJ_G0031595.1 mouse_genomes_project 7 95049420 95052858 + C2cd3 protein_coding retained_intron MGP_CASTEiJ_T0085337.1 MGP_CASTEiJ_G0031595.1 mouse_genomes_project 7 95062268 95068262 + MGP_CASTEiJ_P0085337 C2cd3 protein_coding protein_coding MGP_CASTEiJ_T0082741.1 MGP_CASTEiJ_G0030981.1 mouse_genomes_project 7 20791133 20817672 - MGP_CASTEiJ_P0082741 Supt5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082742.1 MGP_CASTEiJ_G0030981.1 mouse_genomes_project 7 20791142 20817965 - MGP_CASTEiJ_P0082742 Supt5 protein_coding protein_coding MGP_CASTEiJ_T0100000.1 MGP_CASTEiJ_G0036913.1 mouse_genomes_project 7 20578248 20578354 + Gm24356 snRNA snRNA MGP_CASTEiJ_T0085010.1 MGP_CASTEiJ_G0031513.1 mouse_genomes_project 7 80853997 80867568 + MGP_CASTEiJ_P0085010 protein_coding protein_coding MGP_CASTEiJ_T0086433.1 MGP_CASTEiJ_G0031982.1 mouse_genomes_project 7 117930723 118298202 + MGP_CASTEiJ_P0086433 Prkcb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086434.1 MGP_CASTEiJ_G0031982.1 mouse_genomes_project 7 117931269 118292462 + MGP_CASTEiJ_P0086434 Prkcb protein_coding protein_coding MGP_CASTEiJ_T0086435.1 MGP_CASTEiJ_G0031982.1 mouse_genomes_project 7 117931281 118298205 + MGP_CASTEiJ_P0086435 Prkcb protein_coding protein_coding MGP_CASTEiJ_T0086436.1 MGP_CASTEiJ_G0031982.1 mouse_genomes_project 7 117932000 118080475 + Prkcb protein_coding processed_transcript MGP_CASTEiJ_T0086437.1 MGP_CASTEiJ_G0031982.1 mouse_genomes_project 7 118068466 118115849 + Prkcb protein_coding processed_transcript MGP_CASTEiJ_T0086438.1 MGP_CASTEiJ_G0031982.1 mouse_genomes_project 7 118255638 118258441 + Prkcb protein_coding retained_intron MGP_CASTEiJ_T0086439.1 MGP_CASTEiJ_G0031982.1 mouse_genomes_project 7 118261642 118291885 + Prkcb protein_coding processed_transcript MGP_CASTEiJ_T0086440.1 MGP_CASTEiJ_G0031982.1 mouse_genomes_project 7 118297259 118298205 + Prkcb protein_coding retained_intron MGP_CASTEiJ_T0008613.1 MGP_CASTEiJ_G0006973.1 mouse_genomes_project 7 28003790 28007520 + Gm29129 lincRNA lincRNA MGP_CASTEiJ_T0086599.1 MGP_CASTEiJ_G0032010.1 mouse_genomes_project 7 122247115 122258848 - MGP_CASTEiJ_P0086599 Atxn2l protein_coding protein_coding MGP_CASTEiJ_T0086600.1 MGP_CASTEiJ_G0032010.1 mouse_genomes_project 7 122247122 122257825 - MGP_CASTEiJ_P0086600 Atxn2l protein_coding protein_coding MGP_CASTEiJ_T0086601.1 MGP_CASTEiJ_G0032010.1 mouse_genomes_project 7 122247193 122258766 - MGP_CASTEiJ_P0086601 Atxn2l protein_coding protein_coding MGP_CASTEiJ_T0086602.1 MGP_CASTEiJ_G0032010.1 mouse_genomes_project 7 122247559 122248783 - MGP_CASTEiJ_P0086602 Atxn2l protein_coding protein_coding MGP_CASTEiJ_T0086603.1 MGP_CASTEiJ_G0032010.1 mouse_genomes_project 7 122248369 122257729 - MGP_CASTEiJ_P0086603 Atxn2l protein_coding protein_coding MGP_CASTEiJ_T0086604.1 MGP_CASTEiJ_G0032010.1 mouse_genomes_project 7 122254545 122257511 - MGP_CASTEiJ_P0086604 Atxn2l protein_coding protein_coding MGP_CASTEiJ_T0086280.1 MGP_CASTEiJ_G0031942.1 mouse_genomes_project 7 115213410 115219971 - MGP_CASTEiJ_P0086280 Thumpd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0086281.1 MGP_CASTEiJ_G0031942.1 mouse_genomes_project 7 115213416 115219965 - MGP_CASTEiJ_P0086281 Thumpd1 protein_coding protein_coding MGP_CASTEiJ_T0015209.1 MGP_CASTEiJ_G0013372.1 mouse_genomes_project 7 36658416 36659344 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085588.1 MGP_CASTEiJ_G0031656.1 mouse_genomes_project 7 97585952 97586550 + MGP_CASTEiJ_P0085588 protein_coding protein_coding MGP_CASTEiJ_T0015322.1 MGP_CASTEiJ_G0013485.1 mouse_genomes_project 7 124522062 124522352 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015252.1 MGP_CASTEiJ_G0013415.1 mouse_genomes_project 7 74886562 74887350 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002174.1 MGP_CASTEiJ_G0002094.1 mouse_genomes_project 7 57063375 57063980 + TEC TEC MGP_CASTEiJ_T0085998.1 MGP_CASTEiJ_G0031885.1 mouse_genomes_project 7 105828245 105873527 + MGP_CASTEiJ_P0085998 Ampd3 protein_coding protein_coding MGP_CASTEiJ_T0085999.1 MGP_CASTEiJ_G0031885.1 mouse_genomes_project 7 105828364 105853160 + Ampd3 protein_coding processed_transcript MGP_CASTEiJ_T0086000.1 MGP_CASTEiJ_G0031885.1 mouse_genomes_project 7 105832617 105874013 + MGP_CASTEiJ_P0086000 Ampd3 protein_coding protein_coding MGP_CASTEiJ_T0086001.1 MGP_CASTEiJ_G0031885.1 mouse_genomes_project 7 105832801 105856616 + Ampd3 protein_coding retained_intron MGP_CASTEiJ_T0086002.1 MGP_CASTEiJ_G0031885.1 mouse_genomes_project 7 105833650 105850679 + MGP_CASTEiJ_P0086002 Ampd3 protein_coding protein_coding MGP_CASTEiJ_T0086003.1 MGP_CASTEiJ_G0031885.1 mouse_genomes_project 7 105834222 105850601 + MGP_CASTEiJ_P0086003 Ampd3 protein_coding protein_coding MGP_CASTEiJ_T0086004.1 MGP_CASTEiJ_G0031885.1 mouse_genomes_project 7 105839161 105853205 + MGP_CASTEiJ_P0086004 Ampd3 protein_coding protein_coding MGP_CASTEiJ_T0085908.1 MGP_CASTEiJ_G0031860.1 mouse_genomes_project 7 103819804 103827687 - MGP_CASTEiJ_P0085908 Olfr519 protein_coding protein_coding MGP_CASTEiJ_T0085909.1 MGP_CASTEiJ_G0031860.1 mouse_genomes_project 7 103819804 103827827 - MGP_CASTEiJ_P0085909 Olfr519 protein_coding protein_coding MGP_CASTEiJ_T0005155.1 MGP_CASTEiJ_G0004383.1 mouse_genomes_project 7 123447193 123452669 - Gm44759 antisense antisense MGP_CASTEiJ_T0087531.1 MGP_CASTEiJ_G0032202.1 mouse_genomes_project 7 137253855 137254791 - MGP_CASTEiJ_P0087531 Olfr60 protein_coding protein_coding MGP_CASTEiJ_T0002199.1 MGP_CASTEiJ_G0002118.1 mouse_genomes_project 7 72120793 72122429 - TEC TEC MGP_CASTEiJ_T0008770.1 MGP_CASTEiJ_G0007078.1 mouse_genomes_project 7 111870132 111873679 + 4732496C06Rik lincRNA lincRNA MGP_CASTEiJ_T0085287.1 MGP_CASTEiJ_G0031580.1 mouse_genomes_project 7 94149216 94152238 - MGP_CASTEiJ_P0085287 Tpbgl protein_coding protein_coding MGP_CASTEiJ_T0008695.1 MGP_CASTEiJ_G0007035.1 mouse_genomes_project 7 67079549 67090648 - Gm45004 lincRNA lincRNA MGP_CASTEiJ_T0085633.1 MGP_CASTEiJ_G0031699.1 mouse_genomes_project 7 98469323 98470277 - MGP_CASTEiJ_P0085633 Olfr623 protein_coding protein_coding MGP_CASTEiJ_T0085110.1 MGP_CASTEiJ_G0031544.1 mouse_genomes_project 7 90554282 91313484 + MGP_CASTEiJ_P0085110 Tenm4 protein_coding protein_coding MGP_CASTEiJ_T0085111.1 MGP_CASTEiJ_G0031544.1 mouse_genomes_project 7 90586485 90815584 + Tenm4 protein_coding retained_intron MGP_CASTEiJ_T0085112.1 MGP_CASTEiJ_G0031544.1 mouse_genomes_project 7 90586535 90882993 + Tenm4 protein_coding processed_transcript MGP_CASTEiJ_T0085113.1 MGP_CASTEiJ_G0031544.1 mouse_genomes_project 7 90586965 90817412 + Tenm4 protein_coding retained_intron MGP_CASTEiJ_T0085114.1 MGP_CASTEiJ_G0031544.1 mouse_genomes_project 7 90586973 90937894 + MGP_CASTEiJ_P0085114 Tenm4 protein_coding protein_coding MGP_CASTEiJ_T0085115.1 MGP_CASTEiJ_G0031544.1 mouse_genomes_project 7 90587456 91316008 + MGP_CASTEiJ_P0085115 Tenm4 protein_coding protein_coding MGP_CASTEiJ_T0085116.1 MGP_CASTEiJ_G0031544.1 mouse_genomes_project 7 90588490 91313469 + MGP_CASTEiJ_P0085116 Tenm4 protein_coding protein_coding MGP_CASTEiJ_T0085117.1 MGP_CASTEiJ_G0031544.1 mouse_genomes_project 7 90906463 90937894 + MGP_CASTEiJ_P0085117 Tenm4 protein_coding protein_coding MGP_CASTEiJ_T0085118.1 MGP_CASTEiJ_G0031544.1 mouse_genomes_project 7 90934465 91311608 + MGP_CASTEiJ_P0085118 Tenm4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085119.1 MGP_CASTEiJ_G0031544.1 mouse_genomes_project 7 91031635 91130288 + Tenm4 protein_coding retained_intron MGP_CASTEiJ_T0085120.1 MGP_CASTEiJ_G0031544.1 mouse_genomes_project 7 91179306 91198763 + MGP_CASTEiJ_P0085120 Tenm4 protein_coding protein_coding MGP_CASTEiJ_T0085121.1 MGP_CASTEiJ_G0031544.1 mouse_genomes_project 7 91197570 91199601 + Tenm4 protein_coding processed_transcript MGP_CASTEiJ_T0085122.1 MGP_CASTEiJ_G0031544.1 mouse_genomes_project 7 91197570 91245396 + Tenm4 protein_coding retained_intron MGP_CASTEiJ_T0086798.1 MGP_CASTEiJ_G0032040.1 mouse_genomes_project 7 122794933 122811788 - MGP_CASTEiJ_P0086798 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0102576.1 MGP_CASTEiJ_G0039300.1 mouse_genomes_project 7 80739881 80740809 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0084212.1 MGP_CASTEiJ_G0031333.1 mouse_genomes_project 7 42810220 42865057 + MGP_CASTEiJ_P0084212 Slc6a5 protein_coding protein_coding MGP_CASTEiJ_T0084213.1 MGP_CASTEiJ_G0031333.1 mouse_genomes_project 7 42811775 42860703 + MGP_CASTEiJ_P0084213 Slc6a5 protein_coding protein_coding MGP_CASTEiJ_T0085652.1 MGP_CASTEiJ_G0031718.1 mouse_genomes_project 7 98874122 99069152 - MGP_CASTEiJ_P0085652 protein_coding protein_coding MGP_CASTEiJ_T0086854.1 MGP_CASTEiJ_G0032052.1 mouse_genomes_project 7 123022327 123026931 + MGP_CASTEiJ_P0086854 Mylpf protein_coding protein_coding MGP_CASTEiJ_T0086855.1 MGP_CASTEiJ_G0032052.1 mouse_genomes_project 7 123025116 123027696 + MGP_CASTEiJ_P0086855 Mylpf protein_coding protein_coding MGP_CASTEiJ_T0086856.1 MGP_CASTEiJ_G0032052.1 mouse_genomes_project 7 123026087 123026896 + MGP_CASTEiJ_P0086856 Mylpf protein_coding protein_coding MGP_CASTEiJ_T0086857.1 MGP_CASTEiJ_G0032052.1 mouse_genomes_project 7 123026522 123026864 + Mylpf protein_coding retained_intron MGP_CASTEiJ_T0086858.1 MGP_CASTEiJ_G0032052.1 mouse_genomes_project 7 123027304 123027696 + Mylpf protein_coding retained_intron MGP_CASTEiJ_T0010535.1 MGP_CASTEiJ_G0008723.1 mouse_genomes_project 7 13847556 13847621 + Mir3100 miRNA miRNA MGP_CASTEiJ_T0085532.1 MGP_CASTEiJ_G0031629.1 mouse_genomes_project 7 96840192 96849885 + MGP_CASTEiJ_P0085532 Art1 protein_coding protein_coding MGP_CASTEiJ_T0085911.1 MGP_CASTEiJ_G0031862.1 mouse_genomes_project 7 103865730 103876136 + MGP_CASTEiJ_P0085911 Eif3f protein_coding protein_coding MGP_CASTEiJ_T0085912.1 MGP_CASTEiJ_G0031862.1 mouse_genomes_project 7 103871557 103873660 + Eif3f protein_coding retained_intron MGP_CASTEiJ_T0085913.1 MGP_CASTEiJ_G0031862.1 mouse_genomes_project 7 103873492 103874192 + Eif3f protein_coding retained_intron MGP_CASTEiJ_T0086827.1 MGP_CASTEiJ_G0032046.1 mouse_genomes_project 7 122846828 122849348 - MGP_CASTEiJ_P0086827 Zg16 protein_coding protein_coding MGP_CASTEiJ_T0086828.1 MGP_CASTEiJ_G0032046.1 mouse_genomes_project 7 122846828 122848650 - MGP_CASTEiJ_P0086828 Zg16 protein_coding protein_coding MGP_CASTEiJ_T0102457.1 MGP_CASTEiJ_G0039182.1 mouse_genomes_project 7 6996833 6997223 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0083926.1 MGP_CASTEiJ_G0031253.1 mouse_genomes_project 7 37925130 37930510 + MGP_CASTEiJ_P0083926 Kcna7 protein_coding protein_coding MGP_CASTEiJ_T0087182.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126168762 126277847 - MGP_CASTEiJ_P0087182 Fgfr2 protein_coding protein_coding MGP_CASTEiJ_T0087183.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126168762 126277847 - MGP_CASTEiJ_P0087183 Fgfr2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087184.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126169861 126174189 - Fgfr2 protein_coding retained_intron MGP_CASTEiJ_T0087185.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126169962 126277865 - MGP_CASTEiJ_P0087185 Fgfr2 protein_coding protein_coding MGP_CASTEiJ_T0087186.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126169962 126277793 - MGP_CASTEiJ_P0087186 Fgfr2 protein_coding protein_coding MGP_CASTEiJ_T0087187.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126170061 126178243 - Fgfr2 protein_coding retained_intron MGP_CASTEiJ_T0087188.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126170212 126273456 - MGP_CASTEiJ_P0087188 Fgfr2 protein_coding protein_coding MGP_CASTEiJ_T0087189.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126170212 126273456 - MGP_CASTEiJ_P0087189 Fgfr2 protein_coding protein_coding MGP_CASTEiJ_T0087190.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126170212 126273456 - MGP_CASTEiJ_P0087190 Fgfr2 protein_coding protein_coding MGP_CASTEiJ_T0087191.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126170212 126273456 - MGP_CASTEiJ_P0087191 Fgfr2 protein_coding protein_coding MGP_CASTEiJ_T0087192.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126170212 126273456 - MGP_CASTEiJ_P0087192 Fgfr2 protein_coding protein_coding MGP_CASTEiJ_T0087193.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126170212 126273456 - MGP_CASTEiJ_P0087193 Fgfr2 protein_coding protein_coding MGP_CASTEiJ_T0087194.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126170212 126273456 - MGP_CASTEiJ_P0087194 Fgfr2 protein_coding protein_coding MGP_CASTEiJ_T0087195.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126170212 126273456 - MGP_CASTEiJ_P0087195 Fgfr2 protein_coding protein_coding MGP_CASTEiJ_T0087196.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126170212 126273456 - MGP_CASTEiJ_P0087196 Fgfr2 protein_coding protein_coding MGP_CASTEiJ_T0087197.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126170212 126273456 - MGP_CASTEiJ_P0087197 Fgfr2 protein_coding protein_coding MGP_CASTEiJ_T0087198.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126170212 126273456 - MGP_CASTEiJ_P0087198 Fgfr2 protein_coding protein_coding MGP_CASTEiJ_T0087199.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126170212 126273456 - MGP_CASTEiJ_P0087199 Fgfr2 protein_coding protein_coding MGP_CASTEiJ_T0087200.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126170212 126273456 - MGP_CASTEiJ_P0087200 Fgfr2 protein_coding protein_coding MGP_CASTEiJ_T0087201.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126176083 126184396 - Fgfr2 protein_coding retained_intron MGP_CASTEiJ_T0087202.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126184111 126190359 - Fgfr2 protein_coding retained_intron MGP_CASTEiJ_T0087203.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126188003 126207118 - Fgfr2 protein_coding retained_intron MGP_CASTEiJ_T0087204.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126192473 126206630 - Fgfr2 protein_coding retained_intron MGP_CASTEiJ_T0087205.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126210071 126240504 - MGP_CASTEiJ_P0087205 Fgfr2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087206.1 MGP_CASTEiJ_G0032117.1 mouse_genomes_project 7 126252626 126275576 - Fgfr2 protein_coding retained_intron MGP_CASTEiJ_T0085719.1 MGP_CASTEiJ_G0031765.1 mouse_genomes_project 7 100219721 100220881 - MGP_CASTEiJ_P0085719 Olfr683 protein_coding protein_coding MGP_CASTEiJ_T0102510.1 MGP_CASTEiJ_G0039234.1 mouse_genomes_project 7 26774507 26777179 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099991.1 MGP_CASTEiJ_G0036904.1 mouse_genomes_project 7 998465 998636 + Gm23741 snRNA snRNA MGP_CASTEiJ_T0082437.1 MGP_CASTEiJ_G0030902.1 mouse_genomes_project 7 17511953 17523220 - MGP_CASTEiJ_P0082437 Gsk3a protein_coding protein_coding MGP_CASTEiJ_T0082438.1 MGP_CASTEiJ_G0030902.1 mouse_genomes_project 7 17511953 17523220 - MGP_CASTEiJ_P0082438 Gsk3a protein_coding protein_coding MGP_CASTEiJ_T0082439.1 MGP_CASTEiJ_G0030902.1 mouse_genomes_project 7 17514845 17516623 - Gsk3a protein_coding retained_intron MGP_CASTEiJ_T0102580.1 MGP_CASTEiJ_G0039304.1 mouse_genomes_project 7 97720965 97721859 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0005490.1 MGP_CASTEiJ_G0004631.1 mouse_genomes_project 7 73190606 73192406 + 5430400D12Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0017607.1 MGP_CASTEiJ_G0014984.1 mouse_genomes_project 7 38119093 38126478 - processed_transcript processed_transcript MGP_CASTEiJ_T0017608.1 MGP_CASTEiJ_G0014984.1 mouse_genomes_project 7 38119246 38126478 - processed_transcript processed_transcript MGP_CASTEiJ_T0017609.1 MGP_CASTEiJ_G0014984.1 mouse_genomes_project 7 38119410 38126164 - processed_transcript retained_intron MGP_CASTEiJ_T0017610.1 MGP_CASTEiJ_G0014984.1 mouse_genomes_project 7 38119433 38126648 - processed_transcript processed_transcript MGP_CASTEiJ_T0017611.1 MGP_CASTEiJ_G0014984.1 mouse_genomes_project 7 38119529 38126478 - processed_transcript processed_transcript MGP_CASTEiJ_T0017612.1 MGP_CASTEiJ_G0014984.1 mouse_genomes_project 7 38120386 38126494 - processed_transcript retained_intron MGP_CASTEiJ_T0017613.1 MGP_CASTEiJ_G0014984.1 mouse_genomes_project 7 38121475 38122363 - processed_transcript processed_transcript MGP_CASTEiJ_T0017614.1 MGP_CASTEiJ_G0014984.1 mouse_genomes_project 7 38121502 38126515 - processed_transcript processed_transcript MGP_CASTEiJ_T0017615.1 MGP_CASTEiJ_G0014984.1 mouse_genomes_project 7 38125397 38126477 - processed_transcript retained_intron MGP_CASTEiJ_T0005052.1 MGP_CASTEiJ_G0004312.1 mouse_genomes_project 7 23857771 23862158 + G630030J09Rik antisense antisense MGP_CASTEiJ_T0015309.1 MGP_CASTEiJ_G0013472.1 mouse_genomes_project 7 121911328 121911739 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083633.1 MGP_CASTEiJ_G0031181.1 mouse_genomes_project 7 36040135 36047608 + MGP_CASTEiJ_P0083633 Klk6 protein_coding protein_coding MGP_CASTEiJ_T0083634.1 MGP_CASTEiJ_G0031181.1 mouse_genomes_project 7 36040194 36047364 + MGP_CASTEiJ_P0083634 Klk6 protein_coding protein_coding MGP_CASTEiJ_T0083635.1 MGP_CASTEiJ_G0031181.1 mouse_genomes_project 7 36040206 36044176 + MGP_CASTEiJ_P0083635 Klk6 protein_coding protein_coding MGP_CASTEiJ_T0083636.1 MGP_CASTEiJ_G0031181.1 mouse_genomes_project 7 36040973 36047364 + MGP_CASTEiJ_P0083636 Klk6 protein_coding protein_coding MGP_CASTEiJ_T0085861.1 MGP_CASTEiJ_G0031820.1 mouse_genomes_project 7 102083415 102116617 + MGP_CASTEiJ_P0085861 Nlrp14 protein_coding protein_coding MGP_CASTEiJ_T0085862.1 MGP_CASTEiJ_G0031820.1 mouse_genomes_project 7 102103461 102116626 + MGP_CASTEiJ_P0085862 Nlrp14 protein_coding protein_coding MGP_CASTEiJ_T0015123.1 MGP_CASTEiJ_G0013286.1 mouse_genomes_project 7 2902691 2903150 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082136.1 MGP_CASTEiJ_G0030818.1 mouse_genomes_project 7 14143159 14147114 - MGP_CASTEiJ_P0082136 Cd3eap protein_coding protein_coding MGP_CASTEiJ_T0082137.1 MGP_CASTEiJ_G0030818.1 mouse_genomes_project 7 14146471 14147116 - Cd3eap protein_coding retained_intron MGP_CASTEiJ_T0083991.1 MGP_CASTEiJ_G0031268.1 mouse_genomes_project 7 38189804 38193011 + MGP_CASTEiJ_P0083991 Fut1 protein_coding protein_coding MGP_CASTEiJ_T0005065.1 MGP_CASTEiJ_G0004322.1 mouse_genomes_project 7 29748425 29748641 - D530033B14Rik antisense antisense MGP_CASTEiJ_T0005066.1 MGP_CASTEiJ_G0004322.1 mouse_genomes_project 7 29748621 29762069 - D530033B14Rik antisense antisense MGP_CASTEiJ_T0087674.1 MGP_CASTEiJ_G0032248.1 mouse_genomes_project 7 138256545 138257348 - MGP_CASTEiJ_P0087674 Sct protein_coding protein_coding MGP_CASTEiJ_T0087675.1 MGP_CASTEiJ_G0032248.1 mouse_genomes_project 7 138256568 138257346 - MGP_CASTEiJ_P0087675 Sct protein_coding protein_coding MGP_CASTEiJ_T0085342.1 MGP_CASTEiJ_G0031597.1 mouse_genomes_project 7 95101443 95111120 + MGP_CASTEiJ_P0085342 Ucp2 protein_coding protein_coding MGP_CASTEiJ_T0085343.1 MGP_CASTEiJ_G0031597.1 mouse_genomes_project 7 95101470 95106047 + Ucp2 protein_coding retained_intron MGP_CASTEiJ_T0085344.1 MGP_CASTEiJ_G0031597.1 mouse_genomes_project 7 95101901 95106262 + MGP_CASTEiJ_P0085344 Ucp2 protein_coding protein_coding MGP_CASTEiJ_T0085345.1 MGP_CASTEiJ_G0031597.1 mouse_genomes_project 7 95102173 95106404 + MGP_CASTEiJ_P0085345 Ucp2 protein_coding protein_coding MGP_CASTEiJ_T0085346.1 MGP_CASTEiJ_G0031597.1 mouse_genomes_project 7 95105177 95107353 + MGP_CASTEiJ_P0085346 Ucp2 protein_coding protein_coding MGP_CASTEiJ_T0085347.1 MGP_CASTEiJ_G0031597.1 mouse_genomes_project 7 95106294 95107722 + Ucp2 protein_coding processed_transcript MGP_CASTEiJ_T0085348.1 MGP_CASTEiJ_G0031597.1 mouse_genomes_project 7 95106366 95107841 + Ucp2 protein_coding processed_transcript MGP_CASTEiJ_T0085349.1 MGP_CASTEiJ_G0031597.1 mouse_genomes_project 7 95107237 95107708 + Ucp2 protein_coding processed_transcript MGP_CASTEiJ_T0085350.1 MGP_CASTEiJ_G0031597.1 mouse_genomes_project 7 95107442 95108400 + Ucp2 protein_coding processed_transcript MGP_CASTEiJ_T0098642.1 MGP_CASTEiJ_G0035573.1 mouse_genomes_project 7 14896580 14896702 - n-R5s152 rRNA rRNA MGP_CASTEiJ_T0017573.1 MGP_CASTEiJ_G0014969.1 mouse_genomes_project 7 516126 528625 - Gm15927 processed_transcript antisense MGP_CASTEiJ_T0017574.1 MGP_CASTEiJ_G0014969.1 mouse_genomes_project 7 526295 527239 - Gm15927 processed_transcript antisense MGP_CASTEiJ_T0017575.1 MGP_CASTEiJ_G0014969.1 mouse_genomes_project 7 526296 528593 - Gm15927 processed_transcript retained_intron MGP_CASTEiJ_T0017576.1 MGP_CASTEiJ_G0014969.1 mouse_genomes_project 7 528086 528566 - Gm15927 processed_transcript processed_transcript MGP_CASTEiJ_T0017577.1 MGP_CASTEiJ_G0014969.1 mouse_genomes_project 7 528302 528876 - Gm15927 processed_transcript processed_transcript MGP_CASTEiJ_T0084471.1 MGP_CASTEiJ_G0031388.1 mouse_genomes_project 7 59457401 59653246 + Adamts17 protein_coding retained_intron MGP_CASTEiJ_T0084472.1 MGP_CASTEiJ_G0031388.1 mouse_genomes_project 7 59457401 59591007 + Adamts17 protein_coding retained_intron MGP_CASTEiJ_T0084473.1 MGP_CASTEiJ_G0031388.1 mouse_genomes_project 7 59457401 59795238 + MGP_CASTEiJ_P0084473 Adamts17 protein_coding protein_coding MGP_CASTEiJ_T0084474.1 MGP_CASTEiJ_G0031388.1 mouse_genomes_project 7 59457479 59795242 + MGP_CASTEiJ_P0084474 Adamts17 protein_coding protein_coding MGP_CASTEiJ_T0084475.1 MGP_CASTEiJ_G0031388.1 mouse_genomes_project 7 59459929 59695567 + Adamts17 protein_coding processed_transcript MGP_CASTEiJ_T0084476.1 MGP_CASTEiJ_G0031388.1 mouse_genomes_project 7 59469168 59491403 + Adamts17 protein_coding processed_transcript MGP_CASTEiJ_T0084477.1 MGP_CASTEiJ_G0031388.1 mouse_genomes_project 7 59533921 59591007 + Adamts17 protein_coding processed_transcript MGP_CASTEiJ_T0084478.1 MGP_CASTEiJ_G0031388.1 mouse_genomes_project 7 59681018 59714990 + MGP_CASTEiJ_P0084478 Adamts17 protein_coding protein_coding MGP_CASTEiJ_T0081549.1 MGP_CASTEiJ_G0030619.1 mouse_genomes_project 7 1535749 1538206 - MGP_CASTEiJ_P0081549 Tmem86b protein_coding protein_coding MGP_CASTEiJ_T0081550.1 MGP_CASTEiJ_G0030619.1 mouse_genomes_project 7 1535751 1537911 - MGP_CASTEiJ_P0081550 Tmem86b protein_coding protein_coding MGP_CASTEiJ_T0081551.1 MGP_CASTEiJ_G0030619.1 mouse_genomes_project 7 1536115 1539147 - MGP_CASTEiJ_P0081551 Tmem86b protein_coding protein_coding MGP_CASTEiJ_T0081552.1 MGP_CASTEiJ_G0030619.1 mouse_genomes_project 7 1536313 1538060 - MGP_CASTEiJ_P0081552 Tmem86b protein_coding protein_coding MGP_CASTEiJ_T0082457.1 MGP_CASTEiJ_G0030905.1 mouse_genomes_project 7 17583920 17589512 - MGP_CASTEiJ_P0082457 Pafah1b3 protein_coding protein_coding MGP_CASTEiJ_T0082458.1 MGP_CASTEiJ_G0030905.1 mouse_genomes_project 7 17585767 17588567 - Pafah1b3 protein_coding retained_intron MGP_CASTEiJ_T0082459.1 MGP_CASTEiJ_G0030905.1 mouse_genomes_project 7 17585767 17590040 - MGP_CASTEiJ_P0082459 Pafah1b3 protein_coding protein_coding MGP_CASTEiJ_T0082460.1 MGP_CASTEiJ_G0030905.1 mouse_genomes_project 7 17586077 17589942 - MGP_CASTEiJ_P0082460 Pafah1b3 protein_coding protein_coding MGP_CASTEiJ_T0082461.1 MGP_CASTEiJ_G0030905.1 mouse_genomes_project 7 17586686 17589997 - MGP_CASTEiJ_P0082461 Pafah1b3 protein_coding protein_coding MGP_CASTEiJ_T0082462.1 MGP_CASTEiJ_G0030905.1 mouse_genomes_project 7 17588489 17589981 - Pafah1b3 protein_coding retained_intron MGP_CASTEiJ_T0082463.1 MGP_CASTEiJ_G0030905.1 mouse_genomes_project 7 17588933 17589994 - Pafah1b3 protein_coding processed_transcript MGP_CASTEiJ_T0085581.1 MGP_CASTEiJ_G0031650.1 mouse_genomes_project 7 97472935 97473992 + MGP_CASTEiJ_P0085581 Olfr557 protein_coding protein_coding MGP_CASTEiJ_T0081489.1 MGP_CASTEiJ_G0030610.1 mouse_genomes_project 7 1266276 1290641 - MGP_CASTEiJ_P0081489 Gp6 protein_coding protein_coding MGP_CASTEiJ_T0081490.1 MGP_CASTEiJ_G0030610.1 mouse_genomes_project 7 1271067 1290625 - MGP_CASTEiJ_P0081490 Gp6 protein_coding protein_coding MGP_CASTEiJ_T0083849.1 MGP_CASTEiJ_G0031238.1 mouse_genomes_project 7 37625964 37641198 - Aldh16a1 protein_coding retained_intron MGP_CASTEiJ_T0083850.1 MGP_CASTEiJ_G0031238.1 mouse_genomes_project 7 37626185 37641245 - MGP_CASTEiJ_P0083850 Aldh16a1 protein_coding protein_coding MGP_CASTEiJ_T0083851.1 MGP_CASTEiJ_G0031238.1 mouse_genomes_project 7 37627113 37629966 - MGP_CASTEiJ_P0083851 Aldh16a1 protein_coding protein_coding MGP_CASTEiJ_T0083852.1 MGP_CASTEiJ_G0031238.1 mouse_genomes_project 7 37627719 37641256 - MGP_CASTEiJ_P0083852 Aldh16a1 protein_coding protein_coding MGP_CASTEiJ_T0083853.1 MGP_CASTEiJ_G0031238.1 mouse_genomes_project 7 37628053 37630000 - Aldh16a1 protein_coding processed_transcript MGP_CASTEiJ_T0083854.1 MGP_CASTEiJ_G0031238.1 mouse_genomes_project 7 37630315 37631298 - Aldh16a1 protein_coding retained_intron MGP_CASTEiJ_T0083855.1 MGP_CASTEiJ_G0031238.1 mouse_genomes_project 7 37632661 37641162 - Aldh16a1 protein_coding processed_transcript MGP_CASTEiJ_T0083856.1 MGP_CASTEiJ_G0031238.1 mouse_genomes_project 7 37632722 37641119 - Aldh16a1 protein_coding processed_transcript MGP_CASTEiJ_T0083857.1 MGP_CASTEiJ_G0031238.1 mouse_genomes_project 7 37632801 37633114 - Aldh16a1 protein_coding processed_transcript MGP_CASTEiJ_T0083858.1 MGP_CASTEiJ_G0031238.1 mouse_genomes_project 7 37633146 37634420 - Aldh16a1 protein_coding retained_intron MGP_CASTEiJ_T0002152.1 MGP_CASTEiJ_G0002072.1 mouse_genomes_project 7 35884971 35885425 + TEC TEC MGP_CASTEiJ_T0083062.1 MGP_CASTEiJ_G0031057.1 mouse_genomes_project 7 23074485 23085114 - MGP_CASTEiJ_P0083062 Aplp1 protein_coding protein_coding MGP_CASTEiJ_T0084721.1 MGP_CASTEiJ_G0031435.1 mouse_genomes_project 7 73493965 73535179 + MGP_CASTEiJ_P0084721 Sema4b protein_coding protein_coding MGP_CASTEiJ_T0084722.1 MGP_CASTEiJ_G0031435.1 mouse_genomes_project 7 73494002 73529128 + Sema4b protein_coding retained_intron MGP_CASTEiJ_T0084723.1 MGP_CASTEiJ_G0031435.1 mouse_genomes_project 7 73505592 73535063 + MGP_CASTEiJ_P0084723 Sema4b protein_coding protein_coding MGP_CASTEiJ_T0084724.1 MGP_CASTEiJ_G0031435.1 mouse_genomes_project 7 73505687 73521234 + Sema4b protein_coding retained_intron MGP_CASTEiJ_T0002215.1 MGP_CASTEiJ_G0002134.1 mouse_genomes_project 7 86886543 86890167 + TEC TEC MGP_CASTEiJ_T0082495.1 MGP_CASTEiJ_G0030916.1 mouse_genomes_project 7 17927222 17929004 + MGP_CASTEiJ_P0082495 B3gnt8 protein_coding protein_coding MGP_CASTEiJ_T0082496.1 MGP_CASTEiJ_G0030916.1 mouse_genomes_project 7 17928215 17935671 + MGP_CASTEiJ_P0082496 B3gnt8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082497.1 MGP_CASTEiJ_G0030916.1 mouse_genomes_project 7 17928216 17930070 + MGP_CASTEiJ_P0082497 B3gnt8 protein_coding protein_coding MGP_CASTEiJ_T0082498.1 MGP_CASTEiJ_G0030916.1 mouse_genomes_project 7 17928220 17930063 + B3gnt8 protein_coding retained_intron MGP_CASTEiJ_T0015254.1 MGP_CASTEiJ_G0013417.1 mouse_genomes_project 7 78108579 78109153 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083629.1 MGP_CASTEiJ_G0031179.1 mouse_genomes_project 7 36008416 36017035 + MGP_CASTEiJ_P0083629 Klk8 protein_coding protein_coding MGP_CASTEiJ_T0083630.1 MGP_CASTEiJ_G0031179.1 mouse_genomes_project 7 36008435 36016885 + MGP_CASTEiJ_P0083630 Klk8 protein_coding protein_coding MGP_CASTEiJ_T0083631.1 MGP_CASTEiJ_G0031179.1 mouse_genomes_project 7 36015026 36017039 + Klk8 protein_coding retained_intron MGP_CASTEiJ_T0015199.1 MGP_CASTEiJ_G0013362.1 mouse_genomes_project 7 34403722 34403829 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0084328.1 MGP_CASTEiJ_G0031357.1 mouse_genomes_project 7 52298450 52323711 - MGP_CASTEiJ_P0084328 Snrpn protein_coding protein_coding MGP_CASTEiJ_T0084329.1 MGP_CASTEiJ_G0031357.1 mouse_genomes_project 7 52298457 52510828 - MGP_CASTEiJ_P0084329 Snrpn protein_coding protein_coding MGP_CASTEiJ_T0081545.1 MGP_CASTEiJ_G0030618.1 mouse_genomes_project 7 1451731 1509853 - MGP_CASTEiJ_P0081545 Ptprh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081546.1 MGP_CASTEiJ_G0030618.1 mouse_genomes_project 7 1452097 1510749 - MGP_CASTEiJ_P0081546 Ptprh protein_coding protein_coding MGP_CASTEiJ_T0081547.1 MGP_CASTEiJ_G0030618.1 mouse_genomes_project 7 1455715 1465147 - Ptprh protein_coding retained_intron MGP_CASTEiJ_T0081548.1 MGP_CASTEiJ_G0030618.1 mouse_genomes_project 7 1496601 1509851 - Ptprh protein_coding processed_transcript MGP_CASTEiJ_T0087937.1 MGP_CASTEiJ_G0032291.1 mouse_genomes_project 7 140167743 140169581 + MGP_CASTEiJ_P0087937 Tssc4 protein_coding protein_coding MGP_CASTEiJ_T0087938.1 MGP_CASTEiJ_G0032291.1 mouse_genomes_project 7 140167829 140169035 + MGP_CASTEiJ_P0087938 Tssc4 protein_coding protein_coding MGP_CASTEiJ_T0087939.1 MGP_CASTEiJ_G0032291.1 mouse_genomes_project 7 140167856 140169575 + MGP_CASTEiJ_P0087939 Tssc4 protein_coding protein_coding MGP_CASTEiJ_T0087940.1 MGP_CASTEiJ_G0032291.1 mouse_genomes_project 7 140167856 140169575 + MGP_CASTEiJ_P0087940 Tssc4 protein_coding protein_coding MGP_CASTEiJ_T0087941.1 MGP_CASTEiJ_G0032291.1 mouse_genomes_project 7 140167912 140169034 + MGP_CASTEiJ_P0087941 Tssc4 protein_coding protein_coding MGP_CASTEiJ_T0087942.1 MGP_CASTEiJ_G0032291.1 mouse_genomes_project 7 140168032 140169098 + MGP_CASTEiJ_P0087942 Tssc4 protein_coding protein_coding MGP_CASTEiJ_T0102584.1 MGP_CASTEiJ_G0039308.1 mouse_genomes_project 7 98015913 98016837 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100051.1 MGP_CASTEiJ_G0036964.1 mouse_genomes_project 7 138151960 138152056 - Gm22019 snRNA snRNA MGP_CASTEiJ_T0083311.1 MGP_CASTEiJ_G0031102.1 mouse_genomes_project 7 24004282 24005585 - MGP_CASTEiJ_P0083311 Scgb1b2 protein_coding protein_coding MGP_CASTEiJ_T0084527.1 MGP_CASTEiJ_G0031398.1 mouse_genomes_project 7 64268231 64270746 - MGP_CASTEiJ_P0084527 Gm10295 protein_coding protein_coding MGP_CASTEiJ_T0017647.1 MGP_CASTEiJ_G0014995.1 mouse_genomes_project 7 74448481 74456313 + Platr32 processed_transcript processed_transcript MGP_CASTEiJ_T0084335.1 MGP_CASTEiJ_G0031363.1 mouse_genomes_project 7 55622981 55741599 - MGP_CASTEiJ_P0084335 Chrna7 protein_coding protein_coding MGP_CASTEiJ_T0084336.1 MGP_CASTEiJ_G0031363.1 mouse_genomes_project 7 55623411 55741646 - MGP_CASTEiJ_P0084336 Chrna7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0087338.1 MGP_CASTEiJ_G0032149.1 mouse_genomes_project 7 129946052 129952018 - Mmp21 protein_coding retained_intron MGP_CASTEiJ_T0087339.1 MGP_CASTEiJ_G0032149.1 mouse_genomes_project 7 129946052 129952018 - MGP_CASTEiJ_P0087339 Mmp21 protein_coding protein_coding MGP_CASTEiJ_T0087340.1 MGP_CASTEiJ_G0032149.1 mouse_genomes_project 7 129946138 129952018 - MGP_CASTEiJ_P0087340 Mmp21 protein_coding protein_coding MGP_CASTEiJ_T0100040.1 MGP_CASTEiJ_G0036953.1 mouse_genomes_project 7 119090527 119090630 - Gm23559 snRNA snRNA MGP_CASTEiJ_T0011345.1 MGP_CASTEiJ_G0009533.1 mouse_genomes_project 7 3810861 3811159 - Gm22649 misc_RNA misc_RNA MGP_CASTEiJ_T0102564.1 MGP_CASTEiJ_G0039288.1 mouse_genomes_project 7 79406087 79408624 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0083818.1 MGP_CASTEiJ_G0031220.1 mouse_genomes_project 7 37353893 37358442 + MGP_CASTEiJ_P0083818 Fuz protein_coding protein_coding MGP_CASTEiJ_T0084307.1 MGP_CASTEiJ_G0031354.1 mouse_genomes_project 7 51459248 51641749 + MGP_CASTEiJ_P0084307 Atp10a protein_coding protein_coding MGP_CASTEiJ_T0085857.1 MGP_CASTEiJ_G0031816.1 mouse_genomes_project 7 102015899 102016847 + MGP_CASTEiJ_P0085857 Olfr17 protein_coding protein_coding MGP_CASTEiJ_T0083756.1 MGP_CASTEiJ_G0031210.1 mouse_genomes_project 7 37152660 37164079 + MGP_CASTEiJ_P0083756 Izumo2 protein_coding protein_coding MGP_CASTEiJ_T0082123.1 MGP_CASTEiJ_G0030815.1 mouse_genomes_project 7 14060064 14071159 + MGP_CASTEiJ_P0082123 Rtn2 protein_coding protein_coding MGP_CASTEiJ_T0082124.1 MGP_CASTEiJ_G0030815.1 mouse_genomes_project 7 14066101 14071154 + MGP_CASTEiJ_P0082124 Rtn2 protein_coding protein_coding MGP_CASTEiJ_T0017618.1 MGP_CASTEiJ_G0014986.1 mouse_genomes_project 7 48772288 48784177 + A230056P14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017619.1 MGP_CASTEiJ_G0014986.1 mouse_genomes_project 7 48772288 48791926 + A230056P14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0082272.1 MGP_CASTEiJ_G0030863.1 mouse_genomes_project 7 16317635 16327172 + MGP_CASTEiJ_P0082272 Zfp114 protein_coding protein_coding MGP_CASTEiJ_T0082273.1 MGP_CASTEiJ_G0030863.1 mouse_genomes_project 7 16317661 16328440 + MGP_CASTEiJ_P0082273 Zfp114 protein_coding protein_coding MGP_CASTEiJ_T0082274.1 MGP_CASTEiJ_G0030863.1 mouse_genomes_project 7 16319939 16329328 + MGP_CASTEiJ_P0082274 Zfp114 protein_coding protein_coding MGP_CASTEiJ_T0015150.1 MGP_CASTEiJ_G0013313.1 mouse_genomes_project 7 14828516 14829260 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005135.1 MGP_CASTEiJ_G0004369.1 mouse_genomes_project 7 111322703 111323275 + Sox6os antisense antisense MGP_CASTEiJ_T0085739.1 MGP_CASTEiJ_G0031777.1 mouse_genomes_project 7 100519738 100571997 + MGP_CASTEiJ_P0085739 Cckbr protein_coding protein_coding MGP_CASTEiJ_T0085740.1 MGP_CASTEiJ_G0031777.1 mouse_genomes_project 7 100519741 100531513 + MGP_CASTEiJ_P0085740 Cckbr protein_coding protein_coding MGP_CASTEiJ_T0005115.1 MGP_CASTEiJ_G0004355.1 mouse_genomes_project 7 90981048 91014807 - Gm15414 antisense antisense MGP_CASTEiJ_T0087488.1 MGP_CASTEiJ_G0032186.1 mouse_genomes_project 7 136919277 136923478 + MGP_CASTEiJ_P0087488 Zfp511 protein_coding protein_coding MGP_CASTEiJ_T0010544.1 MGP_CASTEiJ_G0008732.1 mouse_genomes_project 7 18158440 18158536 - Gm24865 miRNA miRNA MGP_CASTEiJ_T0085643.1 MGP_CASTEiJ_G0031709.1 mouse_genomes_project 7 98681595 98682849 - MGP_CASTEiJ_P0085643 Hbb-bh2 protein_coding protein_coding MGP_CASTEiJ_T0085634.1 MGP_CASTEiJ_G0031700.1 mouse_genomes_project 7 98491531 98492204 - MGP_CASTEiJ_P0085634 Olfr624 protein_coding protein_coding MGP_CASTEiJ_T0100045.1 MGP_CASTEiJ_G0036958.1 mouse_genomes_project 7 123944918 123945074 - Gm22809 snRNA snRNA MGP_CASTEiJ_T0082688.1 MGP_CASTEiJ_G0030960.1 mouse_genomes_project 7 20083021 20086449 + MGP_CASTEiJ_P0082688 Ttc9b protein_coding protein_coding MGP_CASTEiJ_T0085606.1 MGP_CASTEiJ_G0031673.1 mouse_genomes_project 7 97937596 97938550 - MGP_CASTEiJ_P0085606 Olfr589 protein_coding protein_coding MGP_CASTEiJ_T0087806.1 MGP_CASTEiJ_G0032271.1 mouse_genomes_project 7 138966522 139016936 + MGP_CASTEiJ_P0087806 Brsk2 protein_coding protein_coding MGP_CASTEiJ_T0087807.1 MGP_CASTEiJ_G0032271.1 mouse_genomes_project 7 138966522 139022179 + MGP_CASTEiJ_P0087807 Brsk2 protein_coding protein_coding MGP_CASTEiJ_T0087808.1 MGP_CASTEiJ_G0032271.1 mouse_genomes_project 7 138968399 139017103 + MGP_CASTEiJ_P0087808 Brsk2 protein_coding protein_coding MGP_CASTEiJ_T0087809.1 MGP_CASTEiJ_G0032271.1 mouse_genomes_project 7 138968481 139020856 + MGP_CASTEiJ_P0087809 Brsk2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087810.1 MGP_CASTEiJ_G0032271.1 mouse_genomes_project 7 138968557 139018879 + MGP_CASTEiJ_P0087810 Brsk2 protein_coding protein_coding MGP_CASTEiJ_T0087811.1 MGP_CASTEiJ_G0032271.1 mouse_genomes_project 7 138968560 139020159 + MGP_CASTEiJ_P0087811 Brsk2 protein_coding protein_coding MGP_CASTEiJ_T0087812.1 MGP_CASTEiJ_G0032271.1 mouse_genomes_project 7 138968560 139022180 + MGP_CASTEiJ_P0087812 Brsk2 protein_coding protein_coding MGP_CASTEiJ_T0087813.1 MGP_CASTEiJ_G0032271.1 mouse_genomes_project 7 138999476 139020074 + MGP_CASTEiJ_P0087813 Brsk2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087814.1 MGP_CASTEiJ_G0032271.1 mouse_genomes_project 7 139002788 139020074 + MGP_CASTEiJ_P0087814 Brsk2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087815.1 MGP_CASTEiJ_G0032271.1 mouse_genomes_project 7 139002828 139021102 + MGP_CASTEiJ_P0087815 Brsk2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087816.1 MGP_CASTEiJ_G0032271.1 mouse_genomes_project 7 139003649 139020074 + MGP_CASTEiJ_P0087816 Brsk2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087817.1 MGP_CASTEiJ_G0032271.1 mouse_genomes_project 7 139011084 139020077 + MGP_CASTEiJ_P0087817 Brsk2 protein_coding protein_coding MGP_CASTEiJ_T0087818.1 MGP_CASTEiJ_G0032271.1 mouse_genomes_project 7 139011140 139020403 + MGP_CASTEiJ_P0087818 Brsk2 protein_coding protein_coding MGP_CASTEiJ_T0087819.1 MGP_CASTEiJ_G0032271.1 mouse_genomes_project 7 139015400 139022000 + Brsk2 protein_coding processed_transcript MGP_CASTEiJ_T0087820.1 MGP_CASTEiJ_G0032271.1 mouse_genomes_project 7 139015428 139020602 + Brsk2 protein_coding processed_transcript MGP_CASTEiJ_T0087821.1 MGP_CASTEiJ_G0032271.1 mouse_genomes_project 7 139016591 139019370 + MGP_CASTEiJ_P0087821 Brsk2 protein_coding protein_coding MGP_CASTEiJ_T0082531.1 MGP_CASTEiJ_G0030923.1 mouse_genomes_project 7 18026491 18061736 - MGP_CASTEiJ_P0082531 Hnrnpul1 protein_coding protein_coding MGP_CASTEiJ_T0082532.1 MGP_CASTEiJ_G0030923.1 mouse_genomes_project 7 18043651 18061802 - MGP_CASTEiJ_P0082532 Hnrnpul1 protein_coding protein_coding MGP_CASTEiJ_T0082533.1 MGP_CASTEiJ_G0030923.1 mouse_genomes_project 7 18046326 18048619 - Hnrnpul1 protein_coding retained_intron MGP_CASTEiJ_T0082534.1 MGP_CASTEiJ_G0030923.1 mouse_genomes_project 7 18048794 18051431 - Hnrnpul1 protein_coding retained_intron MGP_CASTEiJ_T0005156.1 MGP_CASTEiJ_G0004384.1 mouse_genomes_project 7 123460605 123461151 - 1700120K04Rik antisense antisense MGP_CASTEiJ_T0081559.1 MGP_CASTEiJ_G0030621.1 mouse_genomes_project 7 1568838 1593803 - MGP_CASTEiJ_P0081559 Hspbp1 protein_coding protein_coding MGP_CASTEiJ_T0081560.1 MGP_CASTEiJ_G0030621.1 mouse_genomes_project 7 1570461 1572952 - MGP_CASTEiJ_P0081560 Hspbp1 protein_coding protein_coding MGP_CASTEiJ_T0081561.1 MGP_CASTEiJ_G0030621.1 mouse_genomes_project 7 1572526 1573117 - Hspbp1 protein_coding processed_transcript MGP_CASTEiJ_T0081562.1 MGP_CASTEiJ_G0030621.1 mouse_genomes_project 7 1572929 1593729 - MGP_CASTEiJ_P0081562 Hspbp1 protein_coding protein_coding MGP_CASTEiJ_T0081563.1 MGP_CASTEiJ_G0030621.1 mouse_genomes_project 7 1586854 1593396 - MGP_CASTEiJ_P0081563 Hspbp1 protein_coding protein_coding MGP_CASTEiJ_T0081564.1 MGP_CASTEiJ_G0030621.1 mouse_genomes_project 7 1586854 1593716 - MGP_CASTEiJ_P0081564 Hspbp1 protein_coding protein_coding MGP_CASTEiJ_T0085880.1 MGP_CASTEiJ_G0031832.1 mouse_genomes_project 7 102936458 102940211 + MGP_CASTEiJ_P0085880 protein_coding protein_coding MGP_CASTEiJ_T0087390.1 MGP_CASTEiJ_G0032164.1 mouse_genomes_project 7 133567781 133811460 + MGP_CASTEiJ_P0087390 Mgmt protein_coding protein_coding MGP_CASTEiJ_T0084674.1 MGP_CASTEiJ_G0031422.1 mouse_genomes_project 7 72845364 72871194 - MGP_CASTEiJ_P0084674 Rhcg protein_coding protein_coding MGP_CASTEiJ_T0084675.1 MGP_CASTEiJ_G0031422.1 mouse_genomes_project 7 72845370 72846931 - MGP_CASTEiJ_P0084675 Rhcg protein_coding protein_coding MGP_CASTEiJ_T0084676.1 MGP_CASTEiJ_G0031422.1 mouse_genomes_project 7 72857273 72861417 - MGP_CASTEiJ_P0084676 Rhcg protein_coding protein_coding MGP_CASTEiJ_T0081691.1 MGP_CASTEiJ_G0030667.1 mouse_genomes_project 7 3331355 3339792 + MGP_CASTEiJ_P0081691 protein_coding protein_coding MGP_CASTEiJ_T0081692.1 MGP_CASTEiJ_G0030667.1 mouse_genomes_project 7 3331355 3339792 + MGP_CASTEiJ_P0081692 protein_coding protein_coding MGP_CASTEiJ_T0011364.1 MGP_CASTEiJ_G0009552.1 mouse_genomes_project 7 122842765 122843011 + Gm25333 misc_RNA misc_RNA MGP_CASTEiJ_T0081899.1 MGP_CASTEiJ_G0030753.1 mouse_genomes_project 7 10886326 10890053 + MGP_CASTEiJ_P0081899 Meis3 protein_coding protein_coding MGP_CASTEiJ_T0081900.1 MGP_CASTEiJ_G0030753.1 mouse_genomes_project 7 10886375 10890051 + MGP_CASTEiJ_P0081900 Meis3 protein_coding protein_coding MGP_CASTEiJ_T0081901.1 MGP_CASTEiJ_G0030753.1 mouse_genomes_project 7 10886511 10897645 + MGP_CASTEiJ_P0081901 Meis3 protein_coding protein_coding MGP_CASTEiJ_T0081902.1 MGP_CASTEiJ_G0030753.1 mouse_genomes_project 7 10886624 10897642 + Meis3 protein_coding retained_intron MGP_CASTEiJ_T0081903.1 MGP_CASTEiJ_G0030753.1 mouse_genomes_project 7 10886666 10897645 + MGP_CASTEiJ_P0081903 Meis3 protein_coding protein_coding MGP_CASTEiJ_T0081904.1 MGP_CASTEiJ_G0030753.1 mouse_genomes_project 7 10886666 10897645 + MGP_CASTEiJ_P0081904 Meis3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081905.1 MGP_CASTEiJ_G0030753.1 mouse_genomes_project 7 10888959 10889695 + Meis3 protein_coding retained_intron MGP_CASTEiJ_T0081906.1 MGP_CASTEiJ_G0030753.1 mouse_genomes_project 7 10890302 10896653 + MGP_CASTEiJ_P0081906 Meis3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081907.1 MGP_CASTEiJ_G0030753.1 mouse_genomes_project 7 10895247 10897645 + Meis3 protein_coding retained_intron MGP_CASTEiJ_T0015180.1 MGP_CASTEiJ_G0013343.1 mouse_genomes_project 7 25001949 25002719 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002128.1 MGP_CASTEiJ_G0002048.1 mouse_genomes_project 7 12488193 12490345 - TEC TEC MGP_CASTEiJ_T0085272.1 MGP_CASTEiJ_G0031578.1 mouse_genomes_project 7 93995061 94001092 - MGP_CASTEiJ_P0085272 Rps3 protein_coding protein_coding MGP_CASTEiJ_T0085273.1 MGP_CASTEiJ_G0031578.1 mouse_genomes_project 7 93995069 94001005 - MGP_CASTEiJ_P0085273 Rps3 protein_coding protein_coding MGP_CASTEiJ_T0085274.1 MGP_CASTEiJ_G0031578.1 mouse_genomes_project 7 93996117 94001004 - Rps3 protein_coding retained_intron MGP_CASTEiJ_T0085275.1 MGP_CASTEiJ_G0031578.1 mouse_genomes_project 7 93996936 94000988 - Rps3 protein_coding retained_intron MGP_CASTEiJ_T0081354.1 MGP_CASTEiJ_G0030586.1 mouse_genomes_project 7 109746 146052 - MGP_CASTEiJ_P0081354 Nlrp12 protein_coding protein_coding MGP_CASTEiJ_T0081355.1 MGP_CASTEiJ_G0030586.1 mouse_genomes_project 7 135112 146179 - Nlrp12 protein_coding retained_intron MGP_CASTEiJ_T0082513.1 MGP_CASTEiJ_G0030920.1 mouse_genomes_project 7 17984288 17990219 + MGP_CASTEiJ_P0082513 B9d2 protein_coding protein_coding MGP_CASTEiJ_T0082514.1 MGP_CASTEiJ_G0030920.1 mouse_genomes_project 7 17984346 17987294 + MGP_CASTEiJ_P0082514 B9d2 protein_coding protein_coding MGP_CASTEiJ_T0082515.1 MGP_CASTEiJ_G0030920.1 mouse_genomes_project 7 17984364 17987077 + MGP_CASTEiJ_P0082515 B9d2 protein_coding protein_coding MGP_CASTEiJ_T0082516.1 MGP_CASTEiJ_G0030920.1 mouse_genomes_project 7 17984666 17990219 + MGP_CASTEiJ_P0082516 B9d2 protein_coding protein_coding MGP_CASTEiJ_T0081616.1 MGP_CASTEiJ_G0030633.1 mouse_genomes_project 7 1775631 1804110 - MGP_CASTEiJ_P0081616 Isoc2b protein_coding protein_coding MGP_CASTEiJ_T0015266.1 MGP_CASTEiJ_G0013429.1 mouse_genomes_project 7 88905428 88905819 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010612.1 MGP_CASTEiJ_G0008800.1 mouse_genomes_project 7 122843816 122843906 - Gm44343 miRNA miRNA MGP_CASTEiJ_T0081853.1 MGP_CASTEiJ_G0030735.1 mouse_genomes_project 7 9110172 9111834 - MGP_CASTEiJ_P0081853 Sult2a2 protein_coding protein_coding MGP_CASTEiJ_T0102509.1 MGP_CASTEiJ_G0039233.1 mouse_genomes_project 7 25077607 25078786 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008583.1 MGP_CASTEiJ_G0006946.1 mouse_genomes_project 7 14631328 14636119 + Gm26600 lincRNA lincRNA MGP_CASTEiJ_T0102549.1 MGP_CASTEiJ_G0039273.1 mouse_genomes_project 7 78382570 78384715 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008783.1 MGP_CASTEiJ_G0007088.1 mouse_genomes_project 7 121130138 121131263 - Gm44766 lincRNA lincRNA MGP_CASTEiJ_T0017598.1 MGP_CASTEiJ_G0014981.1 mouse_genomes_project 7 36652118 36652563 + processed_transcript lincRNA MGP_CASTEiJ_T0017599.1 MGP_CASTEiJ_G0014981.1 mouse_genomes_project 7 36652201 36652560 + processed_transcript retained_intron MGP_CASTEiJ_T0017600.1 MGP_CASTEiJ_G0014981.1 mouse_genomes_project 7 36652232 36652561 + processed_transcript retained_intron MGP_CASTEiJ_T0101662.1 MGP_CASTEiJ_G0038498.1 mouse_genomes_project 7 124216841 124243291 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101663.1 MGP_CASTEiJ_G0038498.1 mouse_genomes_project 7 124243051 124243213 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0086779.1 MGP_CASTEiJ_G0032036.1 mouse_genomes_project 7 122735053 122738617 - MGP_CASTEiJ_P0086779 protein_coding protein_coding MGP_CASTEiJ_T0086780.1 MGP_CASTEiJ_G0032036.1 mouse_genomes_project 7 122735454 122739040 - MGP_CASTEiJ_P0086780 protein_coding protein_coding MGP_CASTEiJ_T0086781.1 MGP_CASTEiJ_G0032036.1 mouse_genomes_project 7 122735473 122739039 - MGP_CASTEiJ_P0086781 protein_coding protein_coding MGP_CASTEiJ_T0082859.1 MGP_CASTEiJ_G0031009.1 mouse_genomes_project 7 21561195 21603504 - MGP_CASTEiJ_P0082859 Ryr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082860.1 MGP_CASTEiJ_G0031009.1 mouse_genomes_project 7 21561196 21693783 - MGP_CASTEiJ_P0082860 Ryr1 protein_coding protein_coding MGP_CASTEiJ_T0082861.1 MGP_CASTEiJ_G0031009.1 mouse_genomes_project 7 21561200 21693783 - MGP_CASTEiJ_P0082861 Ryr1 protein_coding protein_coding MGP_CASTEiJ_T0082862.1 MGP_CASTEiJ_G0031009.1 mouse_genomes_project 7 21605461 21693647 - MGP_CASTEiJ_P0082862 Ryr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082198.1 MGP_CASTEiJ_G0030836.1 mouse_genomes_project 7 14509155 14512528 - MGP_CASTEiJ_P0082198 Apoc4 protein_coding protein_coding MGP_CASTEiJ_T0015332.1 MGP_CASTEiJ_G0013495.1 mouse_genomes_project 7 136654764 136655341 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102563.1 MGP_CASTEiJ_G0039287.1 mouse_genomes_project 7 79368001 79368840 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0082358.1 MGP_CASTEiJ_G0030886.1 mouse_genomes_project 7 16931058 16965833 - MGP_CASTEiJ_P0082358 Gm4763 protein_coding protein_coding MGP_CASTEiJ_T0082359.1 MGP_CASTEiJ_G0030886.1 mouse_genomes_project 7 16964977 16965754 - Gm4763 protein_coding processed_transcript MGP_CASTEiJ_T0085657.1 MGP_CASTEiJ_G0031723.1 mouse_genomes_project 7 98976583 98977543 - MGP_CASTEiJ_P0085657 protein_coding protein_coding MGP_CASTEiJ_T0085869.1 MGP_CASTEiJ_G0031823.1 mouse_genomes_project 7 102495872 102520085 + MGP_CASTEiJ_P0085869 Olfml1 protein_coding protein_coding MGP_CASTEiJ_T0015126.1 MGP_CASTEiJ_G0013289.1 mouse_genomes_project 7 7355026 7355681 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0087097.1 MGP_CASTEiJ_G0032104.1 mouse_genomes_project 7 124132523 124133277 + Armc5 protein_coding processed_transcript MGP_CASTEiJ_T0087098.1 MGP_CASTEiJ_G0032104.1 mouse_genomes_project 7 124132538 124139890 + MGP_CASTEiJ_P0087098 Armc5 protein_coding protein_coding MGP_CASTEiJ_T0002139.1 MGP_CASTEiJ_G0002059.1 mouse_genomes_project 7 28164218 28165376 + TEC TEC MGP_CASTEiJ_T0101255.1 MGP_CASTEiJ_G0038168.1 mouse_genomes_project 7 82455255 82455388 + Gm25345 snoRNA snoRNA MGP_CASTEiJ_T0085663.1 MGP_CASTEiJ_G0031729.1 mouse_genomes_project 7 99082709 99085003 - MGP_CASTEiJ_P0085663 Ubqlnl protein_coding protein_coding MGP_CASTEiJ_T0002213.1 MGP_CASTEiJ_G0002132.1 mouse_genomes_project 7 74972755 74974975 - TEC TEC MGP_CASTEiJ_T0005024.1 MGP_CASTEiJ_G0004290.1 mouse_genomes_project 7 16068222 16212333 - antisense antisense MGP_CASTEiJ_T0086314.1 MGP_CASTEiJ_G0031949.1 mouse_genomes_project 7 115616471 115638090 + MGP_CASTEiJ_P0086314 Tmem159 protein_coding protein_coding MGP_CASTEiJ_T0086315.1 MGP_CASTEiJ_G0031949.1 mouse_genomes_project 7 115616490 115619368 + Tmem159 protein_coding retained_intron MGP_CASTEiJ_T0086316.1 MGP_CASTEiJ_G0031949.1 mouse_genomes_project 7 115616998 115638096 + MGP_CASTEiJ_P0086316 Tmem159 protein_coding protein_coding MGP_CASTEiJ_T0102529.1 MGP_CASTEiJ_G0039253.1 mouse_genomes_project 7 40044560 40045478 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0083672.1 MGP_CASTEiJ_G0031195.1 mouse_genomes_project 7 36792679 36811313 + MGP_CASTEiJ_P0083672 Syt3 protein_coding protein_coding MGP_CASTEiJ_T0083673.1 MGP_CASTEiJ_G0031195.1 mouse_genomes_project 7 36792704 36794022 + Syt3 protein_coding processed_transcript MGP_CASTEiJ_T0083674.1 MGP_CASTEiJ_G0031195.1 mouse_genomes_project 7 36792731 36811471 + MGP_CASTEiJ_P0083674 Syt3 protein_coding protein_coding MGP_CASTEiJ_T0083675.1 MGP_CASTEiJ_G0031195.1 mouse_genomes_project 7 36793181 36794694 + MGP_CASTEiJ_P0083675 Syt3 protein_coding protein_coding MGP_CASTEiJ_T0083676.1 MGP_CASTEiJ_G0031195.1 mouse_genomes_project 7 36793181 36794624 + MGP_CASTEiJ_P0083676 Syt3 protein_coding protein_coding MGP_CASTEiJ_T0083677.1 MGP_CASTEiJ_G0031195.1 mouse_genomes_project 7 36793445 36811047 + MGP_CASTEiJ_P0083677 Syt3 protein_coding protein_coding MGP_CASTEiJ_T0087297.1 MGP_CASTEiJ_G0032143.1 mouse_genomes_project 7 129047021 129122281 + MGP_CASTEiJ_P0087297 Fam175b protein_coding unknown_likely_coding MGP_CASTEiJ_T0087303.1 MGP_CASTEiJ_G0032143.1 mouse_genomes_project 7 129096808 129122276 + MGP_CASTEiJ_P0087303 Fam175b protein_coding protein_coding MGP_CASTEiJ_T0087304.1 MGP_CASTEiJ_G0032143.1 mouse_genomes_project 7 129096820 129118196 + MGP_CASTEiJ_P0087304 Fam175b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087305.1 MGP_CASTEiJ_G0032143.1 mouse_genomes_project 7 129096827 129118459 + MGP_CASTEiJ_P0087305 Fam175b protein_coding protein_coding MGP_CASTEiJ_T0087306.1 MGP_CASTEiJ_G0032143.1 mouse_genomes_project 7 129096832 129113037 + Fam175b protein_coding retained_intron MGP_CASTEiJ_T0087307.1 MGP_CASTEiJ_G0032143.1 mouse_genomes_project 7 129096832 129122273 + MGP_CASTEiJ_P0087307 Fam175b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087308.1 MGP_CASTEiJ_G0032143.1 mouse_genomes_project 7 129096890 129115928 + Fam175b protein_coding processed_transcript MGP_CASTEiJ_T0087309.1 MGP_CASTEiJ_G0032143.1 mouse_genomes_project 7 129116688 129122275 + Fam175b protein_coding retained_intron MGP_CASTEiJ_T0087389.1 MGP_CASTEiJ_G0032163.1 mouse_genomes_project 7 132270249 132296844 - MGP_CASTEiJ_P0087389 Mki67 protein_coding protein_coding MGP_CASTEiJ_T0102452.1 MGP_CASTEiJ_G0039177.1 mouse_genomes_project 7 5856984 5857358 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0082842.1 MGP_CASTEiJ_G0031004.1 mouse_genomes_project 7 21414746 21416590 + MGP_CASTEiJ_P0082842 Lgals7 protein_coding protein_coding MGP_CASTEiJ_T0082843.1 MGP_CASTEiJ_G0031004.1 mouse_genomes_project 7 21415122 21417178 + MGP_CASTEiJ_P0082843 Lgals7 protein_coding protein_coding MGP_CASTEiJ_T0082844.1 MGP_CASTEiJ_G0031004.1 mouse_genomes_project 7 21415348 21415882 + Lgals7 protein_coding processed_transcript MGP_CASTEiJ_T0084180.1 MGP_CASTEiJ_G0031328.1 mouse_genomes_project 7 41678151 41693358 - MGP_CASTEiJ_P0084180 E2f8 protein_coding protein_coding MGP_CASTEiJ_T0084181.1 MGP_CASTEiJ_G0031328.1 mouse_genomes_project 7 41678151 41692804 - MGP_CASTEiJ_P0084181 E2f8 protein_coding protein_coding MGP_CASTEiJ_T0084182.1 MGP_CASTEiJ_G0031328.1 mouse_genomes_project 7 41683868 41687015 - E2f8 protein_coding retained_intron MGP_CASTEiJ_T0084183.1 MGP_CASTEiJ_G0031328.1 mouse_genomes_project 7 41690586 41692767 - E2f8 protein_coding retained_intron MGP_CASTEiJ_T0081702.1 MGP_CASTEiJ_G0030675.1 mouse_genomes_project 7 3450545 3567613 - MGP_CASTEiJ_P0081702 Olfr5 protein_coding protein_coding MGP_CASTEiJ_T0085288.1 MGP_CASTEiJ_G0031581.1 mouse_genomes_project 7 94186624 94242878 - MGP_CASTEiJ_P0085288 Slco2b1 protein_coding protein_coding MGP_CASTEiJ_T0085289.1 MGP_CASTEiJ_G0031581.1 mouse_genomes_project 7 94187210 94227022 - MGP_CASTEiJ_P0085289 Slco2b1 protein_coding protein_coding MGP_CASTEiJ_T0085290.1 MGP_CASTEiJ_G0031581.1 mouse_genomes_project 7 94187210 94238745 - MGP_CASTEiJ_P0085290 Slco2b1 protein_coding protein_coding MGP_CASTEiJ_T0085291.1 MGP_CASTEiJ_G0031581.1 mouse_genomes_project 7 94188695 94193721 - MGP_CASTEiJ_P0085291 Slco2b1 protein_coding protein_coding MGP_CASTEiJ_T0085292.1 MGP_CASTEiJ_G0031581.1 mouse_genomes_project 7 94218643 94226841 - MGP_CASTEiJ_P0085292 Slco2b1 protein_coding protein_coding MGP_CASTEiJ_T0085293.1 MGP_CASTEiJ_G0031581.1 mouse_genomes_project 7 94220244 94226795 - MGP_CASTEiJ_P0085293 Slco2b1 protein_coding protein_coding MGP_CASTEiJ_T0002186.1 MGP_CASTEiJ_G0002105.1 mouse_genomes_project 7 66825824 66826514 - TEC TEC MGP_CASTEiJ_T0102461.1 MGP_CASTEiJ_G0039186.1 mouse_genomes_project 7 7143480 7143679 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0085900.1 MGP_CASTEiJ_G0031852.1 mouse_genomes_project 7 103564307 103565382 - MGP_CASTEiJ_P0085900 Olfr509 protein_coding protein_coding MGP_CASTEiJ_T0015166.1 MGP_CASTEiJ_G0013329.1 mouse_genomes_project 7 18281041 18281210 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085659.1 MGP_CASTEiJ_G0031725.1 mouse_genomes_project 7 99012745 99013693 - MGP_CASTEiJ_P0085659 Olfr645 protein_coding protein_coding MGP_CASTEiJ_T0083405.1 MGP_CASTEiJ_G0031124.1 mouse_genomes_project 7 26579410 26634489 - MGP_CASTEiJ_P0083405 Gpatch1 protein_coding protein_coding MGP_CASTEiJ_T0083406.1 MGP_CASTEiJ_G0031124.1 mouse_genomes_project 7 26579418 26634470 - MGP_CASTEiJ_P0083406 Gpatch1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083407.1 MGP_CASTEiJ_G0031124.1 mouse_genomes_project 7 26591987 26634489 - MGP_CASTEiJ_P0083407 Gpatch1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083408.1 MGP_CASTEiJ_G0031124.1 mouse_genomes_project 7 26592020 26593688 - Gpatch1 protein_coding retained_intron MGP_CASTEiJ_T0083409.1 MGP_CASTEiJ_G0031124.1 mouse_genomes_project 7 26619561 26634444 - Gpatch1 protein_coding retained_intron MGP_CASTEiJ_T0087218.1 MGP_CASTEiJ_G0032120.1 mouse_genomes_project 7 126590646 126691544 + MGP_CASTEiJ_P0087218 Tacc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0087219.1 MGP_CASTEiJ_G0032120.1 mouse_genomes_project 7 126590646 126788786 + MGP_CASTEiJ_P0087219 Tacc2 protein_coding protein_coding MGP_CASTEiJ_T0087220.1 MGP_CASTEiJ_G0032120.1 mouse_genomes_project 7 126590646 126788788 + MGP_CASTEiJ_P0087220 Tacc2 protein_coding protein_coding MGP_CASTEiJ_T0087221.1 MGP_CASTEiJ_G0032120.1 mouse_genomes_project 7 126710720 126788788 + MGP_CASTEiJ_P0087221 Tacc2 protein_coding protein_coding MGP_CASTEiJ_T0087222.1 MGP_CASTEiJ_G0032120.1 mouse_genomes_project 7 126711077 126788312 + MGP_CASTEiJ_P0087222 Tacc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083827.1 MGP_CASTEiJ_G0031225.1 mouse_genomes_project 7 37442016 37452151 - MGP_CASTEiJ_P0083827 protein_coding protein_coding MGP_CASTEiJ_T0015177.1 MGP_CASTEiJ_G0013340.1 mouse_genomes_project 7 24851784 24852252 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005117.1 MGP_CASTEiJ_G0004357.1 mouse_genomes_project 7 91213548 91218588 - Gm15416 antisense antisense MGP_CASTEiJ_T0082992.1 MGP_CASTEiJ_G0031041.1 mouse_genomes_project 7 22808486 22810327 + MGP_CASTEiJ_P0082992 Cox7a1 protein_coding protein_coding MGP_CASTEiJ_T0101256.1 MGP_CASTEiJ_G0038169.1 mouse_genomes_project 7 87412440 87412566 - Gm25860 snoRNA snoRNA MGP_CASTEiJ_T0083733.1 MGP_CASTEiJ_G0031204.1 mouse_genomes_project 7 36985531 36989602 - MGP_CASTEiJ_P0083733 Nr1h2 protein_coding protein_coding MGP_CASTEiJ_T0083734.1 MGP_CASTEiJ_G0031204.1 mouse_genomes_project 7 36985531 36989865 - MGP_CASTEiJ_P0083734 Nr1h2 protein_coding protein_coding MGP_CASTEiJ_T0083735.1 MGP_CASTEiJ_G0031204.1 mouse_genomes_project 7 36985532 36989864 - MGP_CASTEiJ_P0083735 Nr1h2 protein_coding protein_coding MGP_CASTEiJ_T0083736.1 MGP_CASTEiJ_G0031204.1 mouse_genomes_project 7 36985550 36989839 - MGP_CASTEiJ_P0083736 Nr1h2 protein_coding protein_coding MGP_CASTEiJ_T0083737.1 MGP_CASTEiJ_G0031204.1 mouse_genomes_project 7 36985567 36989839 - MGP_CASTEiJ_P0083737 Nr1h2 protein_coding protein_coding MGP_CASTEiJ_T0083738.1 MGP_CASTEiJ_G0031204.1 mouse_genomes_project 7 36986217 36989827 - Nr1h2 protein_coding retained_intron MGP_CASTEiJ_T0083739.1 MGP_CASTEiJ_G0031204.1 mouse_genomes_project 7 36986289 36987539 - Nr1h2 protein_coding retained_intron MGP_CASTEiJ_T0083740.1 MGP_CASTEiJ_G0031204.1 mouse_genomes_project 7 36986972 36989867 - Nr1h2 protein_coding retained_intron MGP_CASTEiJ_T0083741.1 MGP_CASTEiJ_G0031204.1 mouse_genomes_project 7 36987055 36987787 - Nr1h2 protein_coding retained_intron MGP_CASTEiJ_T0083742.1 MGP_CASTEiJ_G0031204.1 mouse_genomes_project 7 36988124 36988503 - Nr1h2 protein_coding retained_intron MGP_CASTEiJ_T0083743.1 MGP_CASTEiJ_G0031204.1 mouse_genomes_project 7 36988409 36989839 - Nr1h2 protein_coding retained_intron MGP_CASTEiJ_T0083744.1 MGP_CASTEiJ_G0031204.1 mouse_genomes_project 7 36988508 36989128 - Nr1h2 protein_coding retained_intron MGP_CASTEiJ_T0083745.1 MGP_CASTEiJ_G0031204.1 mouse_genomes_project 7 36988549 36989815 - Nr1h2 protein_coding retained_intron MGP_CASTEiJ_T0085646.1 MGP_CASTEiJ_G0031712.1 mouse_genomes_project 7 98740713 98741660 - MGP_CASTEiJ_P0085646 Olfr66 protein_coding protein_coding MGP_CASTEiJ_T0015290.1 MGP_CASTEiJ_G0013453.1 mouse_genomes_project 7 99804497 99805550 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002151.1 MGP_CASTEiJ_G0002071.1 mouse_genomes_project 7 35619286 35620085 + TEC TEC MGP_CASTEiJ_T0085720.1 MGP_CASTEiJ_G0031766.1 mouse_genomes_project 7 100264008 100265096 - MGP_CASTEiJ_P0085720 protein_coding protein_coding MGP_CASTEiJ_T0086754.1 MGP_CASTEiJ_G0032032.1 mouse_genomes_project 7 122647701 122648667 + Hirip3 protein_coding retained_intron MGP_CASTEiJ_T0086755.1 MGP_CASTEiJ_G0032032.1 mouse_genomes_project 7 122647714 122650618 + MGP_CASTEiJ_P0086755 Hirip3 protein_coding protein_coding MGP_CASTEiJ_T0086756.1 MGP_CASTEiJ_G0032032.1 mouse_genomes_project 7 122647726 122648988 + Hirip3 protein_coding retained_intron MGP_CASTEiJ_T0086757.1 MGP_CASTEiJ_G0032032.1 mouse_genomes_project 7 122647729 122649434 + Hirip3 protein_coding processed_transcript MGP_CASTEiJ_T0086758.1 MGP_CASTEiJ_G0032032.1 mouse_genomes_project 7 122647743 122648694 + MGP_CASTEiJ_P0086758 Hirip3 protein_coding protein_coding MGP_CASTEiJ_T0086759.1 MGP_CASTEiJ_G0032032.1 mouse_genomes_project 7 122649105 122649791 + Hirip3 protein_coding retained_intron MGP_CASTEiJ_T0086760.1 MGP_CASTEiJ_G0032032.1 mouse_genomes_project 7 122649678 122650161 + Hirip3 protein_coding retained_intron MGP_CASTEiJ_T0085878.1 MGP_CASTEiJ_G0031830.1 mouse_genomes_project 7 102881916 102882849 + MGP_CASTEiJ_P0085878 Olfr473 protein_coding protein_coding MGP_CASTEiJ_T0085727.1 MGP_CASTEiJ_G0031773.1 mouse_genomes_project 7 100459430 100460556 + MGP_CASTEiJ_P0085727 protein_coding protein_coding MGP_CASTEiJ_T0082255.1 MGP_CASTEiJ_G0030857.1 mouse_genomes_project 7 15884346 15884985 + MGP_CASTEiJ_P0082255 protein_coding protein_coding MGP_CASTEiJ_T0008705.1 MGP_CASTEiJ_G0007043.1 mouse_genomes_project 7 72746417 72779090 + Mir9-3hg lincRNA lincRNA MGP_CASTEiJ_T0008706.1 MGP_CASTEiJ_G0007043.1 mouse_genomes_project 7 72746429 72779295 + Mir9-3hg lincRNA lincRNA MGP_CASTEiJ_T0008707.1 MGP_CASTEiJ_G0007043.1 mouse_genomes_project 7 72746508 72782189 + Mir9-3hg lincRNA lincRNA MGP_CASTEiJ_T0008708.1 MGP_CASTEiJ_G0007043.1 mouse_genomes_project 7 72746512 72779180 + Mir9-3hg lincRNA lincRNA MGP_CASTEiJ_T0008709.1 MGP_CASTEiJ_G0007043.1 mouse_genomes_project 7 72761596 72780378 + Mir9-3hg lincRNA lincRNA MGP_CASTEiJ_T0008710.1 MGP_CASTEiJ_G0007043.1 mouse_genomes_project 7 72761798 72779046 + Mir9-3hg lincRNA lincRNA MGP_CASTEiJ_T0008711.1 MGP_CASTEiJ_G0007043.1 mouse_genomes_project 7 72774193 72779831 + Mir9-3hg lincRNA lincRNA MGP_CASTEiJ_T0085582.1 MGP_CASTEiJ_G0031651.1 mouse_genomes_project 7 97481141 97490882 + MGP_CASTEiJ_P0085582 Olfr558 protein_coding protein_coding MGP_CASTEiJ_T0084823.1 MGP_CASTEiJ_G0031450.1 mouse_genomes_project 7 74043308 74153710 - MGP_CASTEiJ_P0084823 Iqgap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084824.1 MGP_CASTEiJ_G0031450.1 mouse_genomes_project 7 74057213 74153876 - MGP_CASTEiJ_P0084824 Iqgap1 protein_coding protein_coding MGP_CASTEiJ_T0084825.1 MGP_CASTEiJ_G0031450.1 mouse_genomes_project 7 74073098 74076473 - MGP_CASTEiJ_P0084825 Iqgap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084826.1 MGP_CASTEiJ_G0031450.1 mouse_genomes_project 7 74088525 74091323 - Iqgap1 protein_coding retained_intron MGP_CASTEiJ_T0084827.1 MGP_CASTEiJ_G0031450.1 mouse_genomes_project 7 74096767 74153723 - Iqgap1 protein_coding retained_intron MGP_CASTEiJ_T0084828.1 MGP_CASTEiJ_G0031450.1 mouse_genomes_project 7 74102520 74153741 - Iqgap1 protein_coding retained_intron MGP_CASTEiJ_T0084829.1 MGP_CASTEiJ_G0031450.1 mouse_genomes_project 7 74110738 74171715 - MGP_CASTEiJ_P0084829 Iqgap1 protein_coding protein_coding MGP_CASTEiJ_T0084830.1 MGP_CASTEiJ_G0031450.1 mouse_genomes_project 7 74116553 74180962 - MGP_CASTEiJ_P0084830 Iqgap1 protein_coding protein_coding MGP_CASTEiJ_T0084831.1 MGP_CASTEiJ_G0031450.1 mouse_genomes_project 7 74145174 74153732 - Iqgap1 protein_coding retained_intron MGP_CASTEiJ_T0005159.1 MGP_CASTEiJ_G0004386.1 mouse_genomes_project 7 124075256 124077028 - Gm45108 antisense antisense MGP_CASTEiJ_T0087790.1 MGP_CASTEiJ_G0032266.1 mouse_genomes_project 7 138652317 138679734 - MGP_CASTEiJ_P0087790 protein_coding protein_coding MGP_CASTEiJ_T0087791.1 MGP_CASTEiJ_G0032266.1 mouse_genomes_project 7 138654488 138679667 - MGP_CASTEiJ_P0087791 protein_coding protein_coding MGP_CASTEiJ_T0015143.1 MGP_CASTEiJ_G0013306.1 mouse_genomes_project 7 11872067 11872532 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085583.1 MGP_CASTEiJ_G0031652.1 mouse_genomes_project 7 97494179 97497229 - MGP_CASTEiJ_P0085583 Olfr33 protein_coding protein_coding MGP_CASTEiJ_T0010543.1 MGP_CASTEiJ_G0008731.1 mouse_genomes_project 7 17501404 17501462 - Mir7048 miRNA miRNA MGP_CASTEiJ_T0005058.1 MGP_CASTEiJ_G0004316.1 mouse_genomes_project 7 25891707 25900266 + Gm12781 antisense antisense MGP_CASTEiJ_T0083492.1 MGP_CASTEiJ_G0031138.1 mouse_genomes_project 7 29496971 29562362 - MGP_CASTEiJ_P0083492 Uri1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0083493.1 MGP_CASTEiJ_G0031138.1 mouse_genomes_project 7 29497506 29562544 - MGP_CASTEiJ_P0083493 Uri1 protein_coding protein_coding MGP_CASTEiJ_T0083494.1 MGP_CASTEiJ_G0031138.1 mouse_genomes_project 7 29497507 29507934 - Uri1 protein_coding processed_transcript MGP_CASTEiJ_T0083495.1 MGP_CASTEiJ_G0031138.1 mouse_genomes_project 7 29498151 29562568 - MGP_CASTEiJ_P0083495 Uri1 protein_coding protein_coding MGP_CASTEiJ_T0083496.1 MGP_CASTEiJ_G0031138.1 mouse_genomes_project 7 29498820 29500054 - MGP_CASTEiJ_P0083496 Uri1 protein_coding protein_coding MGP_CASTEiJ_T0083497.1 MGP_CASTEiJ_G0031138.1 mouse_genomes_project 7 29498883 29566545 - MGP_CASTEiJ_P0083497 Uri1 protein_coding protein_coding MGP_CASTEiJ_T0083498.1 MGP_CASTEiJ_G0031138.1 mouse_genomes_project 7 29503523 29504053 - Uri1 protein_coding processed_transcript MGP_CASTEiJ_T0083499.1 MGP_CASTEiJ_G0031138.1 mouse_genomes_project 7 29507910 29562524 - MGP_CASTEiJ_P0083499 Uri1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0082063.1 MGP_CASTEiJ_G0030801.1 mouse_genomes_project 7 13811565 13833591 + MGP_CASTEiJ_P0082063 Rsph6a protein_coding protein_coding MGP_CASTEiJ_T0082064.1 MGP_CASTEiJ_G0030801.1 mouse_genomes_project 7 13811574 13833591 + MGP_CASTEiJ_P0082064 Rsph6a protein_coding protein_coding MGP_CASTEiJ_T0082065.1 MGP_CASTEiJ_G0030801.1 mouse_genomes_project 7 13814317 13823944 + Rsph6a protein_coding processed_transcript MGP_CASTEiJ_T0085645.1 MGP_CASTEiJ_G0031711.1 mouse_genomes_project 7 98697685 98699182 - MGP_CASTEiJ_P0085645 Hbb-y protein_coding protein_coding MGP_CASTEiJ_T0008810.1 MGP_CASTEiJ_G0007105.1 mouse_genomes_project 7 125813759 125836135 + Gm44778 lincRNA lincRNA MGP_CASTEiJ_T0102516.1 MGP_CASTEiJ_G0039240.1 mouse_genomes_project 7 34526468 34526603 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0083145.1 MGP_CASTEiJ_G0031070.1 mouse_genomes_project 7 23251360 23262459 - MGP_CASTEiJ_P0083145 Upk1a protein_coding protein_coding MGP_CASTEiJ_T0008674.1 MGP_CASTEiJ_G0007017.1 mouse_genomes_project 7 64856590 64883505 + 4930441H08Rik lincRNA lincRNA MGP_CASTEiJ_T0010538.1 MGP_CASTEiJ_G0008726.1 mouse_genomes_project 7 15508382 15508492 + Gm25196 miRNA miRNA MGP_CASTEiJ_T0102586.1 MGP_CASTEiJ_G0039310.1 mouse_genomes_project 7 98329486 98329771 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015301.1 MGP_CASTEiJ_G0013464.1 mouse_genomes_project 7 116805526 116806268 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081724.1 MGP_CASTEiJ_G0030688.1 mouse_genomes_project 7 5827547 5829279 - MGP_CASTEiJ_P0081724 Vmn1r69 protein_coding protein_coding MGP_CASTEiJ_T0081726.1 MGP_CASTEiJ_G0030688.1 mouse_genomes_project 7 5828480 5866801 - MGP_CASTEiJ_P0081726 Vmn1r69 protein_coding protein_coding MGP_CASTEiJ_T0081727.1 MGP_CASTEiJ_G0030688.1 mouse_genomes_project 7 5828480 5866801 - MGP_CASTEiJ_P0081727 Vmn1r69 protein_coding protein_coding MGP_CASTEiJ_T0087520.1 MGP_CASTEiJ_G0032194.1 mouse_genomes_project 7 137054885 137059129 - MGP_CASTEiJ_P0087520 Sprn protein_coding protein_coding MGP_CASTEiJ_T0087521.1 MGP_CASTEiJ_G0032194.1 mouse_genomes_project 7 137055221 137057797 - Sprn protein_coding processed_transcript MGP_CASTEiJ_T0083529.1 MGP_CASTEiJ_G0031148.1 mouse_genomes_project 7 33390459 33419487 - MGP_CASTEiJ_P0083529 Gm6871 protein_coding protein_coding MGP_CASTEiJ_T0083530.1 MGP_CASTEiJ_G0031148.1 mouse_genomes_project 7 33390459 33406135 - MGP_CASTEiJ_P0083530 Gm6871 protein_coding protein_coding MGP_CASTEiJ_T0083531.1 MGP_CASTEiJ_G0031148.1 mouse_genomes_project 7 33407512 33419453 - MGP_CASTEiJ_P0083531 Gm6871 protein_coding protein_coding MGP_CASTEiJ_T0081881.1 MGP_CASTEiJ_G0030748.1 mouse_genomes_project 7 10669443 10696829 - MGP_CASTEiJ_P0081881 Gltscr1 protein_coding protein_coding MGP_CASTEiJ_T0087512.1 MGP_CASTEiJ_G0032192.1 mouse_genomes_project 7 137024586 137038512 + MGP_CASTEiJ_P0087512 protein_coding protein_coding MGP_CASTEiJ_T0087513.1 MGP_CASTEiJ_G0032192.1 mouse_genomes_project 7 137024637 137038512 + MGP_CASTEiJ_P0087513 protein_coding protein_coding MGP_CASTEiJ_T0086627.1 MGP_CASTEiJ_G0032013.1 mouse_genomes_project 7 122351691 122355926 + MGP_CASTEiJ_P0086627 Apobr protein_coding protein_coding MGP_CASTEiJ_T0086628.1 MGP_CASTEiJ_G0032013.1 mouse_genomes_project 7 122351740 122354767 + MGP_CASTEiJ_P0086628 Apobr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086629.1 MGP_CASTEiJ_G0032013.1 mouse_genomes_project 7 122351741 122355186 + MGP_CASTEiJ_P0086629 Apobr protein_coding protein_coding MGP_CASTEiJ_T0086630.1 MGP_CASTEiJ_G0032013.1 mouse_genomes_project 7 122353829 122355261 + MGP_CASTEiJ_P0086630 Apobr protein_coding protein_coding MGP_CASTEiJ_T0086631.1 MGP_CASTEiJ_G0032013.1 mouse_genomes_project 7 122354423 122355141 + MGP_CASTEiJ_P0086631 Apobr protein_coding protein_coding MGP_CASTEiJ_T0002217.1 MGP_CASTEiJ_G0002136.1 mouse_genomes_project 7 111730800 111731755 - TEC TEC MGP_CASTEiJ_T0002225.1 MGP_CASTEiJ_G0002144.1 mouse_genomes_project 7 118011214 118013821 + TEC TEC MGP_CASTEiJ_T0086761.1 MGP_CASTEiJ_G0032033.1 mouse_genomes_project 7 122650921 122669724 - MGP_CASTEiJ_P0086761 Taok2 protein_coding protein_coding MGP_CASTEiJ_T0086762.1 MGP_CASTEiJ_G0032033.1 mouse_genomes_project 7 122651633 122654135 - MGP_CASTEiJ_P0086762 Taok2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0086763.1 MGP_CASTEiJ_G0032033.1 mouse_genomes_project 7 122651743 122652493 - Taok2 protein_coding retained_intron MGP_CASTEiJ_T0086764.1 MGP_CASTEiJ_G0032033.1 mouse_genomes_project 7 122654739 122669724 - MGP_CASTEiJ_P0086764 Taok2 protein_coding protein_coding MGP_CASTEiJ_T0086765.1 MGP_CASTEiJ_G0032033.1 mouse_genomes_project 7 122664980 122667988 - Taok2 protein_coding retained_intron MGP_CASTEiJ_T0083321.1 MGP_CASTEiJ_G0031109.1 mouse_genomes_project 7 25282208 25289964 + MGP_CASTEiJ_P0083321 protein_coding protein_coding MGP_CASTEiJ_T0083721.1 MGP_CASTEiJ_G0031202.1 mouse_genomes_project 7 36958696 36968641 - MGP_CASTEiJ_P0083721 Spib protein_coding protein_coding MGP_CASTEiJ_T0083722.1 MGP_CASTEiJ_G0031202.1 mouse_genomes_project 7 36960677 36966494 - MGP_CASTEiJ_P0083722 Spib protein_coding protein_coding MGP_CASTEiJ_T0083723.1 MGP_CASTEiJ_G0031202.1 mouse_genomes_project 7 36960677 36968623 - MGP_CASTEiJ_P0083723 Spib protein_coding protein_coding MGP_CASTEiJ_T0086125.1 MGP_CASTEiJ_G0031912.1 mouse_genomes_project 7 109983585 110034886 + MGP_CASTEiJ_P0086125 Insc protein_coding protein_coding MGP_CASTEiJ_T0086126.1 MGP_CASTEiJ_G0031912.1 mouse_genomes_project 7 109985631 110035164 + MGP_CASTEiJ_P0086126 Insc protein_coding protein_coding MGP_CASTEiJ_T0086127.1 MGP_CASTEiJ_G0031912.1 mouse_genomes_project 7 109985657 110094748 + MGP_CASTEiJ_P0086127 Insc protein_coding protein_coding MGP_CASTEiJ_T0086128.1 MGP_CASTEiJ_G0031912.1 mouse_genomes_project 7 109993645 110010441 + Insc protein_coding retained_intron MGP_CASTEiJ_T0086129.1 MGP_CASTEiJ_G0031912.1 mouse_genomes_project 7 110009851 110094751 + MGP_CASTEiJ_P0086129 Insc protein_coding protein_coding MGP_CASTEiJ_T0086130.1 MGP_CASTEiJ_G0031912.1 mouse_genomes_project 7 110009889 110034923 + MGP_CASTEiJ_P0086130 Insc protein_coding protein_coding MGP_CASTEiJ_T0086131.1 MGP_CASTEiJ_G0031912.1 mouse_genomes_project 7 110012450 110035059 + Insc protein_coding processed_transcript MGP_CASTEiJ_T0086132.1 MGP_CASTEiJ_G0031912.1 mouse_genomes_project 7 110033296 110108219 + MGP_CASTEiJ_P0086132 Insc protein_coding unknown_likely_coding MGP_CASTEiJ_T0086133.1 MGP_CASTEiJ_G0031912.1 mouse_genomes_project 7 110035914 110094748 + Insc protein_coding retained_intron MGP_CASTEiJ_T0086134.1 MGP_CASTEiJ_G0031912.1 mouse_genomes_project 7 110037822 110073533 + MGP_CASTEiJ_P0086134 Insc protein_coding protein_coding MGP_CASTEiJ_T0015270.1 MGP_CASTEiJ_G0013433.1 mouse_genomes_project 7 90813991 90814463 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102575.1 MGP_CASTEiJ_G0039299.1 mouse_genomes_project 7 80594919 80595615 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0087599.1 MGP_CASTEiJ_G0032231.1 mouse_genomes_project 7 137903158 137906156 + MGP_CASTEiJ_P0087599 Ifitm1 protein_coding protein_coding MGP_CASTEiJ_T0087600.1 MGP_CASTEiJ_G0032231.1 mouse_genomes_project 7 137903966 137906156 + MGP_CASTEiJ_P0087600 Ifitm1 protein_coding protein_coding MGP_CASTEiJ_T0087601.1 MGP_CASTEiJ_G0032231.1 mouse_genomes_project 7 137903978 137906156 + MGP_CASTEiJ_P0087601 Ifitm1 protein_coding protein_coding MGP_CASTEiJ_T0010570.1 MGP_CASTEiJ_G0008758.1 mouse_genomes_project 7 54203663 54203732 - Mir344d-1 miRNA miRNA MGP_CASTEiJ_T0085517.1 MGP_CASTEiJ_G0031626.1 mouse_genomes_project 7 96802278 96835314 + MGP_CASTEiJ_P0085517 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085518.1 MGP_CASTEiJ_G0031626.1 mouse_genomes_project 7 96802278 96834866 + MGP_CASTEiJ_P0085518 protein_coding protein_coding MGP_CASTEiJ_T0085520.1 MGP_CASTEiJ_G0031626.1 mouse_genomes_project 7 96802343 96834784 + MGP_CASTEiJ_P0085520 protein_coding protein_coding MGP_CASTEiJ_T0085521.1 MGP_CASTEiJ_G0031626.1 mouse_genomes_project 7 96814094 96834784 + MGP_CASTEiJ_P0085521 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085522.1 MGP_CASTEiJ_G0031626.1 mouse_genomes_project 7 96814098 96834776 + MGP_CASTEiJ_P0085522 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085976.1 MGP_CASTEiJ_G0031878.1 mouse_genomes_project 7 105017370 105058397 + MGP_CASTEiJ_P0085976 Ipo7 protein_coding protein_coding MGP_CASTEiJ_T0082266.1 MGP_CASTEiJ_G0030862.1 mouse_genomes_project 7 16282017 16284383 + protein_coding retained_intron MGP_CASTEiJ_T0082267.1 MGP_CASTEiJ_G0030862.1 mouse_genomes_project 7 16282022 16285182 + protein_coding processed_transcript MGP_CASTEiJ_T0082268.1 MGP_CASTEiJ_G0030862.1 mouse_genomes_project 7 16282044 16289137 + MGP_CASTEiJ_P0082268 protein_coding protein_coding MGP_CASTEiJ_T0082269.1 MGP_CASTEiJ_G0030862.1 mouse_genomes_project 7 16282055 16283751 + protein_coding retained_intron MGP_CASTEiJ_T0082270.1 MGP_CASTEiJ_G0030862.1 mouse_genomes_project 7 16282076 16285186 + protein_coding processed_transcript MGP_CASTEiJ_T0082271.1 MGP_CASTEiJ_G0030862.1 mouse_genomes_project 7 16282090 16292863 + MGP_CASTEiJ_P0082271 protein_coding protein_coding MGP_CASTEiJ_T0081721.1 MGP_CASTEiJ_G0030685.1 mouse_genomes_project 7 5519222 5520725 - MGP_CASTEiJ_P0081721 Vmn1r66 protein_coding protein_coding MGP_CASTEiJ_T0085644.1 MGP_CASTEiJ_G0031710.1 mouse_genomes_project 7 98684056 98685592 - MGP_CASTEiJ_P0085644 Hbb-bh1 protein_coding protein_coding MGP_CASTEiJ_T0102493.1 MGP_CASTEiJ_G0039218.1 mouse_genomes_project 7 12542279 12588902 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0084224.1 MGP_CASTEiJ_G0031338.1 mouse_genomes_project 7 44563146 44563986 + protein_coding translated_processed_pseudogene MGP_CASTEiJ_T0087491.1 MGP_CASTEiJ_G0032188.1 mouse_genomes_project 7 136959261 136973610 - MGP_CASTEiJ_P0087491 Caly protein_coding unknown_likely_coding MGP_CASTEiJ_T0084295.1 MGP_CASTEiJ_G0031351.1 mouse_genomes_project 7 49518273 50172430 - MGP_CASTEiJ_P0084295 Gabrg3 protein_coding protein_coding MGP_CASTEiJ_T0084296.1 MGP_CASTEiJ_G0031351.1 mouse_genomes_project 7 49965052 50172108 - MGP_CASTEiJ_P0084296 Gabrg3 protein_coding protein_coding MGP_CASTEiJ_T0084297.1 MGP_CASTEiJ_G0031351.1 mouse_genomes_project 7 50109103 50172430 - Gabrg3 protein_coding retained_intron MGP_CASTEiJ_T0083547.1 MGP_CASTEiJ_G0031152.1 mouse_genomes_project 7 34696471 34714560 - MGP_CASTEiJ_P0083547 protein_coding protein_coding MGP_CASTEiJ_T0083548.1 MGP_CASTEiJ_G0031152.1 mouse_genomes_project 7 34696488 34714545 - protein_coding retained_intron MGP_CASTEiJ_T0086206.1 MGP_CASTEiJ_G0031922.1 mouse_genomes_project 7 113538302 113655438 - MGP_CASTEiJ_P0086206 Smg1 protein_coding protein_coding MGP_CASTEiJ_T0086207.1 MGP_CASTEiJ_G0031922.1 mouse_genomes_project 7 113539044 113626418 - MGP_CASTEiJ_P0086207 Smg1 protein_coding protein_coding MGP_CASTEiJ_T0086208.1 MGP_CASTEiJ_G0031922.1 mouse_genomes_project 7 113547182 113548198 - MGP_CASTEiJ_P0086208 Smg1 protein_coding protein_coding MGP_CASTEiJ_T0086209.1 MGP_CASTEiJ_G0031922.1 mouse_genomes_project 7 113605519 113655438 - Smg1 protein_coding retained_intron MGP_CASTEiJ_T0086210.1 MGP_CASTEiJ_G0031922.1 mouse_genomes_project 7 113611113 113655428 - MGP_CASTEiJ_P0086210 Smg1 protein_coding protein_coding MGP_CASTEiJ_T0086211.1 MGP_CASTEiJ_G0031922.1 mouse_genomes_project 7 113614136 113655150 - Smg1 protein_coding retained_intron MGP_CASTEiJ_T0010529.1 MGP_CASTEiJ_G0008717.1 mouse_genomes_project 7 539953 540039 + Mir3572 miRNA miRNA MGP_CASTEiJ_T0083639.1 MGP_CASTEiJ_G0031183.1 mouse_genomes_project 7 36102570 36109050 + MGP_CASTEiJ_P0083639 Klk4 protein_coding protein_coding MGP_CASTEiJ_T0081819.1 MGP_CASTEiJ_G0030726.1 mouse_genomes_project 7 8319176 8320127 + MGP_CASTEiJ_P0081819 Vmn1r88 protein_coding protein_coding MGP_CASTEiJ_T0015251.1 MGP_CASTEiJ_G0013414.1 mouse_genomes_project 7 74635758 74636274 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082792.1 MGP_CASTEiJ_G0030993.1 mouse_genomes_project 7 21210191 21219536 + MGP_CASTEiJ_P0082792 Fbxo27 protein_coding protein_coding MGP_CASTEiJ_T0082793.1 MGP_CASTEiJ_G0030993.1 mouse_genomes_project 7 21210381 21210857 + MGP_CASTEiJ_P0082793 Fbxo27 protein_coding protein_coding MGP_CASTEiJ_T0082794.1 MGP_CASTEiJ_G0030993.1 mouse_genomes_project 7 21210638 21218580 + MGP_CASTEiJ_P0082794 Fbxo27 protein_coding protein_coding MGP_CASTEiJ_T0082795.1 MGP_CASTEiJ_G0030993.1 mouse_genomes_project 7 21216849 21218159 + Fbxo27 protein_coding processed_transcript MGP_CASTEiJ_T0010582.1 MGP_CASTEiJ_G0008770.1 mouse_genomes_project 7 54426518 54426613 - Mir344 miRNA miRNA MGP_CASTEiJ_T0085700.1 MGP_CASTEiJ_G0031746.1 mouse_genomes_project 7 99575327 99576318 + MGP_CASTEiJ_P0085700 Olfr656 protein_coding protein_coding MGP_CASTEiJ_T0087269.1 MGP_CASTEiJ_G0032133.1 mouse_genomes_project 7 127668918 127670980 + MGP_CASTEiJ_P0087269 Hmx3 protein_coding protein_coding MGP_CASTEiJ_T0082819.1 MGP_CASTEiJ_G0031000.1 mouse_genomes_project 7 21325683 21337226 + MGP_CASTEiJ_P0082819 Rinl protein_coding protein_coding MGP_CASTEiJ_T0010586.1 MGP_CASTEiJ_G0008774.1 mouse_genomes_project 7 54653308 54653396 - Gm24923 miRNA miRNA MGP_CASTEiJ_T0010616.1 MGP_CASTEiJ_G0008804.1 mouse_genomes_project 7 124185824 124185891 - Mir3103 miRNA miRNA MGP_CASTEiJ_T0102507.1 MGP_CASTEiJ_G0039231.1 mouse_genomes_project 7 25021812 25022650 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102594.1 MGP_CASTEiJ_G0039318.1 mouse_genomes_project 7 99147063 99148059 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0083897.1 MGP_CASTEiJ_G0031249.1 mouse_genomes_project 7 37841480 37845167 + MGP_CASTEiJ_P0083897 Hrc protein_coding protein_coding MGP_CASTEiJ_T0015159.1 MGP_CASTEiJ_G0013322.1 mouse_genomes_project 7 17738380 17741033 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081696.1 MGP_CASTEiJ_G0030670.1 mouse_genomes_project 7 3371540 3409858 + MGP_CASTEiJ_P0081696 Gm20715 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085215.1 MGP_CASTEiJ_G0031563.1 mouse_genomes_project 7 92640289 92647357 - MGP_CASTEiJ_P0085215 B3gnt6 protein_coding protein_coding MGP_CASTEiJ_T0083681.1 MGP_CASTEiJ_G0031197.1 mouse_genomes_project 7 36889573 36891944 + MGP_CASTEiJ_P0083681 Aspdh protein_coding protein_coding MGP_CASTEiJ_T0083682.1 MGP_CASTEiJ_G0031197.1 mouse_genomes_project 7 36889591 36891520 + MGP_CASTEiJ_P0083682 Aspdh protein_coding protein_coding MGP_CASTEiJ_T0083683.1 MGP_CASTEiJ_G0031197.1 mouse_genomes_project 7 36889599 36891407 + MGP_CASTEiJ_P0083683 Aspdh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083684.1 MGP_CASTEiJ_G0031197.1 mouse_genomes_project 7 36889608 36891398 + Aspdh protein_coding retained_intron MGP_CASTEiJ_T0083685.1 MGP_CASTEiJ_G0031197.1 mouse_genomes_project 7 36889626 36891502 + Aspdh protein_coding processed_transcript MGP_CASTEiJ_T0083686.1 MGP_CASTEiJ_G0031197.1 mouse_genomes_project 7 36890654 36891881 + MGP_CASTEiJ_P0083686 Aspdh protein_coding protein_coding MGP_CASTEiJ_T0015193.1 MGP_CASTEiJ_G0013356.1 mouse_genomes_project 7 33063702 33063930 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015156.1 MGP_CASTEiJ_G0013319.1 mouse_genomes_project 7 16969313 16969718 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085978.1 MGP_CASTEiJ_G0031880.1 mouse_genomes_project 7 105064967 105100026 + MGP_CASTEiJ_P0085978 Zfp143 protein_coding protein_coding MGP_CASTEiJ_T0085979.1 MGP_CASTEiJ_G0031880.1 mouse_genomes_project 7 105064975 105100021 + MGP_CASTEiJ_P0085979 Zfp143 protein_coding protein_coding MGP_CASTEiJ_T0100021.1 MGP_CASTEiJ_G0036934.1 mouse_genomes_project 7 85571460 85571567 - Gm22080 snRNA snRNA MGP_CASTEiJ_T0015292.1 MGP_CASTEiJ_G0013455.1 mouse_genomes_project 7 102117206 102118649 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083754.1 MGP_CASTEiJ_G0031208.1 mouse_genomes_project 7 37042292 37108255 - MGP_CASTEiJ_P0083754 protein_coding protein_coding MGP_CASTEiJ_T0102464.1 MGP_CASTEiJ_G0039189.1 mouse_genomes_project 7 7372449 7373398 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0087096.1 MGP_CASTEiJ_G0032103.1 mouse_genomes_project 7 124129635 124133212 - MGP_CASTEiJ_P0087096 9130023H24Rik protein_coding protein_coding MGP_CASTEiJ_T0082964.1 MGP_CASTEiJ_G0031031.1 mouse_genomes_project 7 22548292 22550847 + MGP_CASTEiJ_P0082964 protein_coding protein_coding MGP_CASTEiJ_T0085258.1 MGP_CASTEiJ_G0031572.1 mouse_genomes_project 7 93651656 93681538 - MGP_CASTEiJ_P0085258 Dgat2 protein_coding protein_coding MGP_CASTEiJ_T0085613.1 MGP_CASTEiJ_G0031679.1 mouse_genomes_project 7 98106415 98107363 + MGP_CASTEiJ_P0085613 Olfr599 protein_coding protein_coding MGP_CASTEiJ_T0084702.1 MGP_CASTEiJ_G0031430.1 mouse_genomes_project 7 73090946 73112657 - MGP_CASTEiJ_P0084702 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084703.1 MGP_CASTEiJ_G0031430.1 mouse_genomes_project 7 73090954 73094653 - protein_coding retained_intron MGP_CASTEiJ_T0084704.1 MGP_CASTEiJ_G0031430.1 mouse_genomes_project 7 73091414 73116256 - MGP_CASTEiJ_P0084704 protein_coding protein_coding MGP_CASTEiJ_T0084705.1 MGP_CASTEiJ_G0031430.1 mouse_genomes_project 7 73110161 73130590 - MGP_CASTEiJ_P0084705 protein_coding protein_coding MGP_CASTEiJ_T0084706.1 MGP_CASTEiJ_G0031430.1 mouse_genomes_project 7 73110719 73116266 - protein_coding processed_transcript MGP_CASTEiJ_T0100047.1 MGP_CASTEiJ_G0036960.1 mouse_genomes_project 7 126039651 126039760 + Gm23847 snRNA snRNA MGP_CASTEiJ_T0085046.1 MGP_CASTEiJ_G0031526.1 mouse_genomes_project 7 83968920 84010340 - MGP_CASTEiJ_P0085046 Ccdc81 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085047.1 MGP_CASTEiJ_G0031526.1 mouse_genomes_project 7 83969161 84010329 - MGP_CASTEiJ_P0085047 Ccdc81 protein_coding protein_coding MGP_CASTEiJ_T0085610.1 MGP_CASTEiJ_G0031676.1 mouse_genomes_project 7 97989959 97990943 + MGP_CASTEiJ_P0085610 Olfr593 protein_coding protein_coding MGP_CASTEiJ_T0087567.1 MGP_CASTEiJ_G0032224.1 mouse_genomes_project 7 137789711 137810874 - MGP_CASTEiJ_P0087567 Sirt3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0087568.1 MGP_CASTEiJ_G0032224.1 mouse_genomes_project 7 137789720 137810893 - MGP_CASTEiJ_P0087568 Sirt3 protein_coding protein_coding MGP_CASTEiJ_T0087569.1 MGP_CASTEiJ_G0032224.1 mouse_genomes_project 7 137789720 137811333 - MGP_CASTEiJ_P0087569 Sirt3 protein_coding protein_coding MGP_CASTEiJ_T0087570.1 MGP_CASTEiJ_G0032224.1 mouse_genomes_project 7 137791004 137806709 - MGP_CASTEiJ_P0087570 Sirt3 protein_coding protein_coding MGP_CASTEiJ_T0087571.1 MGP_CASTEiJ_G0032224.1 mouse_genomes_project 7 137795467 137810893 - MGP_CASTEiJ_P0087571 Sirt3 protein_coding protein_coding MGP_CASTEiJ_T0087572.1 MGP_CASTEiJ_G0032224.1 mouse_genomes_project 7 137804994 137810893 - MGP_CASTEiJ_P0087572 Sirt3 protein_coding protein_coding MGP_CASTEiJ_T0008788.1 MGP_CASTEiJ_G0007092.1 mouse_genomes_project 7 122584898 122592946 - lincRNA lincRNA MGP_CASTEiJ_T0082179.1 MGP_CASTEiJ_G0030830.1 mouse_genomes_project 7 14358145 14390300 - MGP_CASTEiJ_P0082179 Ppp1r37 protein_coding protein_coding MGP_CASTEiJ_T0083188.1 MGP_CASTEiJ_G0031083.1 mouse_genomes_project 7 23491484 23498935 - MGP_CASTEiJ_P0083188 Ffar2 protein_coding protein_coding MGP_CASTEiJ_T0083189.1 MGP_CASTEiJ_G0031083.1 mouse_genomes_project 7 23491493 23494301 - MGP_CASTEiJ_P0083189 Ffar2 protein_coding protein_coding MGP_CASTEiJ_T0083190.1 MGP_CASTEiJ_G0031083.1 mouse_genomes_project 7 23492281 23496805 - MGP_CASTEiJ_P0083190 Ffar2 protein_coding protein_coding MGP_CASTEiJ_T0083191.1 MGP_CASTEiJ_G0031083.1 mouse_genomes_project 7 23492733 23494300 - MGP_CASTEiJ_P0083191 Ffar2 protein_coding protein_coding MGP_CASTEiJ_T0083192.1 MGP_CASTEiJ_G0031083.1 mouse_genomes_project 7 23492851 23494133 - MGP_CASTEiJ_P0083192 Ffar2 protein_coding protein_coding MGP_CASTEiJ_T0083193.1 MGP_CASTEiJ_G0031083.1 mouse_genomes_project 7 23492878 23494309 - MGP_CASTEiJ_P0083193 Ffar2 protein_coding protein_coding MGP_CASTEiJ_T0087865.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139588368 139605285 + Tnnt3 protein_coding processed_transcript MGP_CASTEiJ_T0087866.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139588368 139605285 + MGP_CASTEiJ_P0087866 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087867.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139588368 139605285 + MGP_CASTEiJ_P0087867 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087868.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139588368 139605285 + MGP_CASTEiJ_P0087868 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087869.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139588368 139605285 + MGP_CASTEiJ_P0087869 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087870.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139588368 139605285 + MGP_CASTEiJ_P0087870 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087871.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139588368 139605285 + MGP_CASTEiJ_P0087871 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087872.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139588368 139605285 + MGP_CASTEiJ_P0087872 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087873.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139588375 139605280 + MGP_CASTEiJ_P0087873 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087874.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139588375 139605280 + MGP_CASTEiJ_P0087874 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087875.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139588375 139605280 + MGP_CASTEiJ_P0087875 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087876.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139588375 139605280 + MGP_CASTEiJ_P0087876 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087877.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139588396 139605284 + MGP_CASTEiJ_P0087877 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087878.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139588404 139605281 + MGP_CASTEiJ_P0087878 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087879.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139591149 139601051 + MGP_CASTEiJ_P0087879 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087880.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139591152 139601893 + MGP_CASTEiJ_P0087880 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087881.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139591170 139605107 + MGP_CASTEiJ_P0087881 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087882.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139591170 139605107 + MGP_CASTEiJ_P0087882 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087883.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139591170 139605107 + MGP_CASTEiJ_P0087883 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087884.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139591170 139605107 + MGP_CASTEiJ_P0087884 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087885.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139591170 139605107 + MGP_CASTEiJ_P0087885 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087886.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139591170 139605107 + MGP_CASTEiJ_P0087886 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087887.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139591170 139605107 + MGP_CASTEiJ_P0087887 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087888.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139591170 139605107 + MGP_CASTEiJ_P0087888 Tnnt3 protein_coding protein_coding MGP_CASTEiJ_T0087889.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139593548 139601856 + Tnnt3 protein_coding retained_intron MGP_CASTEiJ_T0087890.1 MGP_CASTEiJ_G0032281.1 mouse_genomes_project 7 139603406 139605286 + Tnnt3 protein_coding retained_intron MGP_CASTEiJ_T0082700.1 MGP_CASTEiJ_G0030965.1 mouse_genomes_project 7 20268603 20273453 + MGP_CASTEiJ_P0082700 Zfp626 protein_coding protein_coding MGP_CASTEiJ_T0086151.1 MGP_CASTEiJ_G0031914.1 mouse_genomes_project 7 111387781 111400375 + MGP_CASTEiJ_P0086151 1110004F10Rik protein_coding protein_coding MGP_CASTEiJ_T0085947.1 MGP_CASTEiJ_G0031871.1 mouse_genomes_project 7 104686672 104699155 - MGP_CASTEiJ_P0085947 BC051019 protein_coding protein_coding MGP_CASTEiJ_T0085948.1 MGP_CASTEiJ_G0031871.1 mouse_genomes_project 7 104686675 104699219 - MGP_CASTEiJ_P0085948 BC051019 protein_coding protein_coding MGP_CASTEiJ_T0085949.1 MGP_CASTEiJ_G0031871.1 mouse_genomes_project 7 104690414 104695523 - MGP_CASTEiJ_P0085949 BC051019 protein_coding protein_coding MGP_CASTEiJ_T0085840.1 MGP_CASTEiJ_G0031800.1 mouse_genomes_project 7 101726152 101727103 - MGP_CASTEiJ_P0085840 Olfr700 protein_coding protein_coding MGP_CASTEiJ_T0101272.1 MGP_CASTEiJ_G0038185.1 mouse_genomes_project 7 111644879 111644966 - Snord14a snoRNA snoRNA MGP_CASTEiJ_T0084015.1 MGP_CASTEiJ_G0031278.1 mouse_genomes_project 7 38304964 38313272 + MGP_CASTEiJ_P0084015 Fam83e protein_coding protein_coding MGP_CASTEiJ_T0084016.1 MGP_CASTEiJ_G0031278.1 mouse_genomes_project 7 38304972 38308615 + Fam83e protein_coding retained_intron MGP_CASTEiJ_T0084018.1 MGP_CASTEiJ_G0031278.1 mouse_genomes_project 7 38309610 38313269 + Fam83e protein_coding processed_transcript MGP_CASTEiJ_T0085528.1 MGP_CASTEiJ_G0031628.1 mouse_genomes_project 7 96835328 96841292 - MGP_CASTEiJ_P0085528 Art5 protein_coding protein_coding MGP_CASTEiJ_T0085529.1 MGP_CASTEiJ_G0031628.1 mouse_genomes_project 7 96835329 96838682 - MGP_CASTEiJ_P0085529 Art5 protein_coding protein_coding MGP_CASTEiJ_T0085530.1 MGP_CASTEiJ_G0031628.1 mouse_genomes_project 7 96835562 96838392 - MGP_CASTEiJ_P0085530 Art5 protein_coding protein_coding MGP_CASTEiJ_T0085531.1 MGP_CASTEiJ_G0031628.1 mouse_genomes_project 7 96835562 96837949 - MGP_CASTEiJ_P0085531 Art5 protein_coding protein_coding MGP_CASTEiJ_T0010521.1 MGP_CASTEiJ_G0008709.1 mouse_genomes_project 7 109860 109938 + Mir291a miRNA miRNA MGP_CASTEiJ_T0015163.1 MGP_CASTEiJ_G0013326.1 mouse_genomes_project 7 17898413 17898973 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0087524.1 MGP_CASTEiJ_G0032197.1 mouse_genomes_project 7 137113216 137114274 - MGP_CASTEiJ_P0087524 Olfr524 protein_coding protein_coding MGP_CASTEiJ_T0015234.1 MGP_CASTEiJ_G0013397.1 mouse_genomes_project 7 62390556 62391558 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085232.1 MGP_CASTEiJ_G0031567.1 mouse_genomes_project 7 92942602 92951590 + MGP_CASTEiJ_P0085232 Lrrc32 protein_coding protein_coding MGP_CASTEiJ_T0085233.1 MGP_CASTEiJ_G0031567.1 mouse_genomes_project 7 92943014 92955518 + MGP_CASTEiJ_P0085233 Lrrc32 protein_coding protein_coding MGP_CASTEiJ_T0085234.1 MGP_CASTEiJ_G0031567.1 mouse_genomes_project 7 92947557 92955175 + MGP_CASTEiJ_P0085234 Lrrc32 protein_coding protein_coding MGP_CASTEiJ_T0100039.1 MGP_CASTEiJ_G0036952.1 mouse_genomes_project 7 117904083 117904190 + Gm23614 snRNA snRNA MGP_CASTEiJ_T0082023.1 MGP_CASTEiJ_G0030787.1 mouse_genomes_project 7 12689966 12698977 + MGP_CASTEiJ_P0082023 Ceacam13 protein_coding protein_coding MGP_CASTEiJ_T0082024.1 MGP_CASTEiJ_G0030787.1 mouse_genomes_project 7 12689966 12693552 + MGP_CASTEiJ_P0082024 Ceacam13 protein_coding protein_coding MGP_CASTEiJ_T0015235.1 MGP_CASTEiJ_G0013398.1 mouse_genomes_project 7 63349666 63350676 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083620.1 MGP_CASTEiJ_G0031175.1 mouse_genomes_project 7 35976967 35981658 + MGP_CASTEiJ_P0083620 Klk12 protein_coding protein_coding MGP_CASTEiJ_T0083621.1 MGP_CASTEiJ_G0031175.1 mouse_genomes_project 7 35977169 35981548 + MGP_CASTEiJ_P0083621 Klk12 protein_coding protein_coding MGP_CASTEiJ_T0085155.1 MGP_CASTEiJ_G0031553.1 mouse_genomes_project 7 91889229 91948805 + MGP_CASTEiJ_P0085155 Ints4 protein_coding protein_coding MGP_CASTEiJ_T0085156.1 MGP_CASTEiJ_G0031553.1 mouse_genomes_project 7 91889276 91922752 + Ints4 protein_coding retained_intron MGP_CASTEiJ_T0085157.1 MGP_CASTEiJ_G0031553.1 mouse_genomes_project 7 91889286 91904030 + Ints4 protein_coding retained_intron MGP_CASTEiJ_T0085158.1 MGP_CASTEiJ_G0031553.1 mouse_genomes_project 7 91909768 91916780 + MGP_CASTEiJ_P0085158 Ints4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085159.1 MGP_CASTEiJ_G0031553.1 mouse_genomes_project 7 91938021 91942669 + Ints4 protein_coding retained_intron MGP_CASTEiJ_T0085160.1 MGP_CASTEiJ_G0031553.1 mouse_genomes_project 7 91942503 91948673 + Ints4 protein_coding retained_intron MGP_CASTEiJ_T0085161.1 MGP_CASTEiJ_G0031553.1 mouse_genomes_project 7 91942735 91948806 + Ints4 protein_coding retained_intron MGP_CASTEiJ_T0010530.1 MGP_CASTEiJ_G0008718.1 mouse_genomes_project 7 1332419 1332511 - Gm24605 miRNA miRNA MGP_CASTEiJ_T0081813.1 MGP_CASTEiJ_G0030723.1 mouse_genomes_project 7 8182428 8192596 - MGP_CASTEiJ_P0081813 Mzf1 protein_coding protein_coding MGP_CASTEiJ_T0081814.1 MGP_CASTEiJ_G0030723.1 mouse_genomes_project 7 8182435 8193137 - MGP_CASTEiJ_P0081814 Mzf1 protein_coding protein_coding MGP_CASTEiJ_T0081815.1 MGP_CASTEiJ_G0030723.1 mouse_genomes_project 7 8182437 8193796 - Mzf1 protein_coding retained_intron MGP_CASTEiJ_T0081816.1 MGP_CASTEiJ_G0030723.1 mouse_genomes_project 7 8187971 8194172 - Mzf1 protein_coding retained_intron MGP_CASTEiJ_T0083782.1 MGP_CASTEiJ_G0031215.1 mouse_genomes_project 7 37291770 37299703 - Tbc1d17 protein_coding retained_intron MGP_CASTEiJ_T0083783.1 MGP_CASTEiJ_G0031215.1 mouse_genomes_project 7 37291889 37299867 - MGP_CASTEiJ_P0083783 Tbc1d17 protein_coding protein_coding MGP_CASTEiJ_T0083784.1 MGP_CASTEiJ_G0031215.1 mouse_genomes_project 7 37291897 37299871 - MGP_CASTEiJ_P0083784 Tbc1d17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083785.1 MGP_CASTEiJ_G0031215.1 mouse_genomes_project 7 37291898 37299682 - Tbc1d17 protein_coding retained_intron MGP_CASTEiJ_T0083786.1 MGP_CASTEiJ_G0031215.1 mouse_genomes_project 7 37294237 37295182 - Tbc1d17 protein_coding retained_intron MGP_CASTEiJ_T0083787.1 MGP_CASTEiJ_G0031215.1 mouse_genomes_project 7 37295434 37296857 - Tbc1d17 protein_coding retained_intron MGP_CASTEiJ_T0083788.1 MGP_CASTEiJ_G0031215.1 mouse_genomes_project 7 37298851 37299687 - Tbc1d17 protein_coding retained_intron MGP_CASTEiJ_T0083789.1 MGP_CASTEiJ_G0031215.1 mouse_genomes_project 7 37299066 37299386 - Tbc1d17 protein_coding retained_intron MGP_CASTEiJ_T0085943.1 MGP_CASTEiJ_G0031870.1 mouse_genomes_project 7 104678159 104686681 + MGP_CASTEiJ_P0085943 Akip1 protein_coding protein_coding MGP_CASTEiJ_T0085944.1 MGP_CASTEiJ_G0031870.1 mouse_genomes_project 7 104678221 104683457 + MGP_CASTEiJ_P0085944 Akip1 protein_coding protein_coding MGP_CASTEiJ_T0085945.1 MGP_CASTEiJ_G0031870.1 mouse_genomes_project 7 104678382 104686458 + MGP_CASTEiJ_P0085945 Akip1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085946.1 MGP_CASTEiJ_G0031870.1 mouse_genomes_project 7 104683316 104686460 + Akip1 protein_coding processed_transcript MGP_CASTEiJ_T0010558.1 MGP_CASTEiJ_G0008746.1 mouse_genomes_project 7 36974668 36974741 - Mir7053 miRNA miRNA MGP_CASTEiJ_T0086200.1 MGP_CASTEiJ_G0031921.1 mouse_genomes_project 7 113520739 113536660 - MGP_CASTEiJ_P0086200 Arl6ip1 protein_coding protein_coding MGP_CASTEiJ_T0086201.1 MGP_CASTEiJ_G0031921.1 mouse_genomes_project 7 113522104 113536107 - Arl6ip1 protein_coding processed_transcript MGP_CASTEiJ_T0086202.1 MGP_CASTEiJ_G0031921.1 mouse_genomes_project 7 113522152 113536574 - MGP_CASTEiJ_P0086202 Arl6ip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086203.1 MGP_CASTEiJ_G0031921.1 mouse_genomes_project 7 113523047 113536572 - MGP_CASTEiJ_P0086203 Arl6ip1 protein_coding protein_coding MGP_CASTEiJ_T0086204.1 MGP_CASTEiJ_G0031921.1 mouse_genomes_project 7 113523074 113536558 - MGP_CASTEiJ_P0086204 Arl6ip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086205.1 MGP_CASTEiJ_G0031921.1 mouse_genomes_project 7 113533309 113536570 - Arl6ip1 protein_coding retained_intron MGP_CASTEiJ_T0017601.1 MGP_CASTEiJ_G0014982.1 mouse_genomes_project 7 37452732 37457558 + Gm15545 processed_transcript processed_transcript MGP_CASTEiJ_T0017602.1 MGP_CASTEiJ_G0014982.1 mouse_genomes_project 7 37452759 37460573 + Gm15545 processed_transcript processed_transcript MGP_CASTEiJ_T0017603.1 MGP_CASTEiJ_G0014982.1 mouse_genomes_project 7 37452766 37456744 + Gm15545 processed_transcript processed_transcript MGP_CASTEiJ_T0017604.1 MGP_CASTEiJ_G0014982.1 mouse_genomes_project 7 37452805 37458302 + Gm15545 processed_transcript processed_transcript MGP_CASTEiJ_T0015171.1 MGP_CASTEiJ_G0013334.1 mouse_genomes_project 7 22898024 22898390 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083315.1 MGP_CASTEiJ_G0031106.1 mouse_genomes_project 7 25067497 25069529 - MGP_CASTEiJ_P0083315 Scgb2b26 protein_coding protein_coding MGP_CASTEiJ_T0015174.1 MGP_CASTEiJ_G0013337.1 mouse_genomes_project 7 24081132 24081235 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002234.1 MGP_CASTEiJ_G0002153.1 mouse_genomes_project 7 122141224 122143102 + TEC TEC MGP_CASTEiJ_T0085692.1 MGP_CASTEiJ_G0031740.1 mouse_genomes_project 7 99416846 99456166 - MGP_CASTEiJ_P0085692 Trim30d protein_coding protein_coding MGP_CASTEiJ_T0085693.1 MGP_CASTEiJ_G0031740.1 mouse_genomes_project 7 99419063 99438997 - MGP_CASTEiJ_P0085693 Trim30d protein_coding protein_coding MGP_CASTEiJ_T0008633.1 MGP_CASTEiJ_G0006987.1 mouse_genomes_project 7 32516215 32525404 + Gm28307 lincRNA lincRNA MGP_CASTEiJ_T0015316.1 MGP_CASTEiJ_G0013479.1 mouse_genomes_project 7 123111495 123111837 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005011.1 MGP_CASTEiJ_G0004281.1 mouse_genomes_project 7 11356610 11378667 + Gm29443 antisense antisense MGP_CASTEiJ_T0005012.1 MGP_CASTEiJ_G0004281.1 mouse_genomes_project 7 11356827 11378766 + Gm29443 antisense antisense MGP_CASTEiJ_T0087374.1 MGP_CASTEiJ_G0032155.1 mouse_genomes_project 7 130585132 130666532 - MGP_CASTEiJ_P0087374 D7Ertd443e protein_coding protein_coding MGP_CASTEiJ_T0087375.1 MGP_CASTEiJ_G0032155.1 mouse_genomes_project 7 130586030 130672714 - MGP_CASTEiJ_P0087375 D7Ertd443e protein_coding protein_coding MGP_CASTEiJ_T0087376.1 MGP_CASTEiJ_G0032155.1 mouse_genomes_project 7 130586043 130617891 - MGP_CASTEiJ_P0087376 D7Ertd443e protein_coding protein_coding MGP_CASTEiJ_T0087377.1 MGP_CASTEiJ_G0032155.1 mouse_genomes_project 7 130586582 130588612 - D7Ertd443e protein_coding retained_intron MGP_CASTEiJ_T0087378.1 MGP_CASTEiJ_G0032155.1 mouse_genomes_project 7 130586582 130655110 - MGP_CASTEiJ_P0087378 D7Ertd443e protein_coding protein_coding MGP_CASTEiJ_T0087379.1 MGP_CASTEiJ_G0032155.1 mouse_genomes_project 7 130655746 130684751 - MGP_CASTEiJ_P0087379 D7Ertd443e protein_coding protein_coding MGP_CASTEiJ_T0087380.1 MGP_CASTEiJ_G0032155.1 mouse_genomes_project 7 130655867 130684745 - MGP_CASTEiJ_P0087380 D7Ertd443e protein_coding protein_coding MGP_CASTEiJ_T0087381.1 MGP_CASTEiJ_G0032155.1 mouse_genomes_project 7 130662529 130693624 - D7Ertd443e protein_coding processed_transcript MGP_CASTEiJ_T0011360.1 MGP_CASTEiJ_G0009548.1 mouse_genomes_project 7 89494344 89494637 + Gm23884 misc_RNA misc_RNA MGP_CASTEiJ_T0101240.1 MGP_CASTEiJ_G0038153.1 mouse_genomes_project 7 52148592 52148661 - Gm25499 snoRNA snoRNA MGP_CASTEiJ_T0084956.1 MGP_CASTEiJ_G0031482.1 mouse_genomes_project 7 77174243 77186876 - Il16 protein_coding retained_intron MGP_CASTEiJ_T0084957.1 MGP_CASTEiJ_G0031482.1 mouse_genomes_project 7 77174459 77270574 - MGP_CASTEiJ_P0084957 Il16 protein_coding protein_coding MGP_CASTEiJ_T0084958.1 MGP_CASTEiJ_G0031482.1 mouse_genomes_project 7 77180954 77186706 - Il16 protein_coding retained_intron MGP_CASTEiJ_T0084959.1 MGP_CASTEiJ_G0031482.1 mouse_genomes_project 7 77192219 77281867 - MGP_CASTEiJ_P0084959 Il16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084960.1 MGP_CASTEiJ_G0031482.1 mouse_genomes_project 7 77255371 77265281 - MGP_CASTEiJ_P0084960 Il16 protein_coding protein_coding MGP_CASTEiJ_T0084961.1 MGP_CASTEiJ_G0031482.1 mouse_genomes_project 7 77255371 77276132 - MGP_CASTEiJ_P0084961 Il16 protein_coding protein_coding MGP_CASTEiJ_T0005152.1 MGP_CASTEiJ_G0004380.1 mouse_genomes_project 7 122828270 122832071 + Gm31749 antisense antisense MGP_CASTEiJ_T0083859.1 MGP_CASTEiJ_G0031239.1 mouse_genomes_project 7 37641069 37646720 + MGP_CASTEiJ_P0083859 Pih1d1 protein_coding protein_coding MGP_CASTEiJ_T0083860.1 MGP_CASTEiJ_G0031239.1 mouse_genomes_project 7 37642602 37646720 + MGP_CASTEiJ_P0083860 Pih1d1 protein_coding protein_coding MGP_CASTEiJ_T0086290.1 MGP_CASTEiJ_G0031944.1 mouse_genomes_project 7 115278144 115290278 - Eri2 protein_coding retained_intron MGP_CASTEiJ_T0086291.1 MGP_CASTEiJ_G0031944.1 mouse_genomes_project 7 115279392 115290285 - MGP_CASTEiJ_P0086291 Eri2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086292.1 MGP_CASTEiJ_G0031944.1 mouse_genomes_project 7 115279409 115290262 - MGP_CASTEiJ_P0086292 Eri2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086293.1 MGP_CASTEiJ_G0031944.1 mouse_genomes_project 7 115280461 115290361 - MGP_CASTEiJ_P0086293 Eri2 protein_coding protein_coding MGP_CASTEiJ_T0086294.1 MGP_CASTEiJ_G0031944.1 mouse_genomes_project 7 115282059 115283519 - Eri2 protein_coding retained_intron MGP_CASTEiJ_T0017644.1 MGP_CASTEiJ_G0014994.1 mouse_genomes_project 7 68411149 68421591 + 1500012K07Rik processed_transcript lincRNA MGP_CASTEiJ_T0017645.1 MGP_CASTEiJ_G0014994.1 mouse_genomes_project 7 68411155 68433531 + 1500012K07Rik processed_transcript antisense MGP_CASTEiJ_T0017646.1 MGP_CASTEiJ_G0014994.1 mouse_genomes_project 7 68411155 68431960 + 1500012K07Rik processed_transcript lincRNA MGP_CASTEiJ_T0083360.1 MGP_CASTEiJ_G0031116.1 mouse_genomes_project 7 25566280 25614105 - MGP_CASTEiJ_P0083360 Lsm14a protein_coding protein_coding MGP_CASTEiJ_T0083361.1 MGP_CASTEiJ_G0031116.1 mouse_genomes_project 7 25566297 25576028 - MGP_CASTEiJ_P0083361 Lsm14a protein_coding protein_coding MGP_CASTEiJ_T0083362.1 MGP_CASTEiJ_G0031116.1 mouse_genomes_project 7 25567355 25617734 - MGP_CASTEiJ_P0083362 Lsm14a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083363.1 MGP_CASTEiJ_G0031116.1 mouse_genomes_project 7 25567578 25595440 - MGP_CASTEiJ_P0083363 Lsm14a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083364.1 MGP_CASTEiJ_G0031116.1 mouse_genomes_project 7 25573362 25576089 - Lsm14a protein_coding retained_intron MGP_CASTEiJ_T0083365.1 MGP_CASTEiJ_G0031116.1 mouse_genomes_project 7 25576015 25613897 - MGP_CASTEiJ_P0083365 Lsm14a protein_coding protein_coding MGP_CASTEiJ_T0083366.1 MGP_CASTEiJ_G0031116.1 mouse_genomes_project 7 25576346 25613498 - MGP_CASTEiJ_P0083366 Lsm14a protein_coding protein_coding MGP_CASTEiJ_T0083367.1 MGP_CASTEiJ_G0031116.1 mouse_genomes_project 7 25611008 25613579 - Lsm14a protein_coding retained_intron MGP_CASTEiJ_T0085105.1 MGP_CASTEiJ_G0031541.1 mouse_genomes_project 7 87000808 87093189 + MGP_CASTEiJ_P0085105 Rab30 protein_coding protein_coding MGP_CASTEiJ_T0085106.1 MGP_CASTEiJ_G0031541.1 mouse_genomes_project 7 87076332 87092718 + MGP_CASTEiJ_P0085106 Rab30 protein_coding protein_coding MGP_CASTEiJ_T0085107.1 MGP_CASTEiJ_G0031541.1 mouse_genomes_project 7 87076347 87092715 + MGP_CASTEiJ_P0085107 Rab30 protein_coding protein_coding MGP_CASTEiJ_T0082161.1 MGP_CASTEiJ_G0030824.1 mouse_genomes_project 7 14216698 14454829 - Relb protein_coding retained_intron MGP_CASTEiJ_T0082162.1 MGP_CASTEiJ_G0030824.1 mouse_genomes_project 7 14216698 14454829 - Relb protein_coding retained_intron MGP_CASTEiJ_T0082163.1 MGP_CASTEiJ_G0030824.1 mouse_genomes_project 7 14216698 14454829 - Relb protein_coding retained_intron MGP_CASTEiJ_T0082164.1 MGP_CASTEiJ_G0030824.1 mouse_genomes_project 7 14216698 14454829 - MGP_CASTEiJ_P0082164 Relb protein_coding protein_coding MGP_CASTEiJ_T0082165.1 MGP_CASTEiJ_G0030824.1 mouse_genomes_project 7 14216698 14454829 - MGP_CASTEiJ_P0082165 Relb protein_coding protein_coding MGP_CASTEiJ_T0082166.1 MGP_CASTEiJ_G0030824.1 mouse_genomes_project 7 14216704 14454829 - MGP_CASTEiJ_P0082166 Relb protein_coding protein_coding MGP_CASTEiJ_T0082188.1 MGP_CASTEiJ_G0030824.1 mouse_genomes_project 7 14430627 14454633 - MGP_CASTEiJ_P0082188 Relb protein_coding unknown_likely_coding MGP_CASTEiJ_T0082189.1 MGP_CASTEiJ_G0030824.1 mouse_genomes_project 7 14441798 14454175 - Relb protein_coding processed_transcript MGP_CASTEiJ_T0082190.1 MGP_CASTEiJ_G0030824.1 mouse_genomes_project 7 14443194 14453864 - Relb protein_coding processed_transcript MGP_CASTEiJ_T0082191.1 MGP_CASTEiJ_G0030824.1 mouse_genomes_project 7 14443258 14453825 - Relb protein_coding processed_transcript MGP_CASTEiJ_T0085837.1 MGP_CASTEiJ_G0031797.1 mouse_genomes_project 7 101666728 101667775 - MGP_CASTEiJ_P0085837 Olfr697 protein_coding protein_coding MGP_CASTEiJ_T0085314.1 MGP_CASTEiJ_G0031591.1 mouse_genomes_project 7 94758841 94767339 + MGP_CASTEiJ_P0085314 Kcne3 protein_coding protein_coding MGP_CASTEiJ_T0085315.1 MGP_CASTEiJ_G0031591.1 mouse_genomes_project 7 94761146 94767339 + MGP_CASTEiJ_P0085315 Kcne3 protein_coding protein_coding MGP_CASTEiJ_T0085316.1 MGP_CASTEiJ_G0031591.1 mouse_genomes_project 7 94761146 94767339 + MGP_CASTEiJ_P0085316 Kcne3 protein_coding protein_coding MGP_CASTEiJ_T0085317.1 MGP_CASTEiJ_G0031591.1 mouse_genomes_project 7 94761146 94767339 + MGP_CASTEiJ_P0085317 Kcne3 protein_coding protein_coding MGP_CASTEiJ_T0015121.1 MGP_CASTEiJ_G0013284.1 mouse_genomes_project 7 2629816 2801617 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0087241.1 MGP_CASTEiJ_G0032124.1 mouse_genomes_project 7 127253158 127264000 - MGP_CASTEiJ_P0087241 4933402N03Rik protein_coding protein_coding MGP_CASTEiJ_T0088027.1 MGP_CASTEiJ_G0032309.1 mouse_genomes_project 7 141758888 141763834 - MGP_CASTEiJ_P0088027 Fadd protein_coding protein_coding MGP_CASTEiJ_T0008671.1 MGP_CASTEiJ_G0007014.1 mouse_genomes_project 7 64133773 64141133 + 6030442E23Rik lincRNA lincRNA MGP_CASTEiJ_T0082465.1 MGP_CASTEiJ_G0030907.1 mouse_genomes_project 7 17599074 17603053 + Tmem145 protein_coding retained_intron MGP_CASTEiJ_T0082466.1 MGP_CASTEiJ_G0030907.1 mouse_genomes_project 7 17599076 17613396 + MGP_CASTEiJ_P0082466 Tmem145 protein_coding protein_coding MGP_CASTEiJ_T0082467.1 MGP_CASTEiJ_G0030907.1 mouse_genomes_project 7 17599076 17613383 + MGP_CASTEiJ_P0082467 Tmem145 protein_coding protein_coding MGP_CASTEiJ_T0082468.1 MGP_CASTEiJ_G0030907.1 mouse_genomes_project 7 17612240 17613393 + Tmem145 protein_coding retained_intron MGP_CASTEiJ_T0083992.1 MGP_CASTEiJ_G0031269.1 mouse_genomes_project 7 38193778 38201118 + MGP_CASTEiJ_P0083992 Izumo1 protein_coding protein_coding MGP_CASTEiJ_T0083993.1 MGP_CASTEiJ_G0031269.1 mouse_genomes_project 7 38196358 38202696 + Izumo1 protein_coding retained_intron MGP_CASTEiJ_T0081521.1 MGP_CASTEiJ_G0030614.1 mouse_genomes_project 7 1399865 1413040 - MGP_CASTEiJ_P0081521 Tnnt1 protein_coding protein_coding MGP_CASTEiJ_T0081522.1 MGP_CASTEiJ_G0030614.1 mouse_genomes_project 7 1399865 1413069 - MGP_CASTEiJ_P0081522 Tnnt1 protein_coding protein_coding MGP_CASTEiJ_T0081523.1 MGP_CASTEiJ_G0030614.1 mouse_genomes_project 7 1399958 1413024 - MGP_CASTEiJ_P0081523 Tnnt1 protein_coding protein_coding MGP_CASTEiJ_T0081524.1 MGP_CASTEiJ_G0030614.1 mouse_genomes_project 7 1399958 1413040 - MGP_CASTEiJ_P0081524 Tnnt1 protein_coding protein_coding MGP_CASTEiJ_T0081525.1 MGP_CASTEiJ_G0030614.1 mouse_genomes_project 7 1400050 1411418 - MGP_CASTEiJ_P0081525 Tnnt1 protein_coding protein_coding MGP_CASTEiJ_T0081526.1 MGP_CASTEiJ_G0030614.1 mouse_genomes_project 7 1400079 1406802 - Tnnt1 protein_coding retained_intron MGP_CASTEiJ_T0081527.1 MGP_CASTEiJ_G0030614.1 mouse_genomes_project 7 1400081 1404941 - Tnnt1 protein_coding processed_transcript MGP_CASTEiJ_T0081528.1 MGP_CASTEiJ_G0030614.1 mouse_genomes_project 7 1404558 1413026 - MGP_CASTEiJ_P0081528 Tnnt1 protein_coding protein_coding MGP_CASTEiJ_T0081529.1 MGP_CASTEiJ_G0030614.1 mouse_genomes_project 7 1404590 1406662 - Tnnt1 protein_coding retained_intron MGP_CASTEiJ_T0081530.1 MGP_CASTEiJ_G0030614.1 mouse_genomes_project 7 1405374 1411665 - MGP_CASTEiJ_P0081530 Tnnt1 protein_coding protein_coding MGP_CASTEiJ_T0081531.1 MGP_CASTEiJ_G0030614.1 mouse_genomes_project 7 1405442 1411624 - MGP_CASTEiJ_P0081531 Tnnt1 protein_coding protein_coding MGP_CASTEiJ_T0081532.1 MGP_CASTEiJ_G0030614.1 mouse_genomes_project 7 1406475 1413447 - MGP_CASTEiJ_P0081532 Tnnt1 protein_coding protein_coding MGP_CASTEiJ_T0081533.1 MGP_CASTEiJ_G0030614.1 mouse_genomes_project 7 1410874 1412170 - MGP_CASTEiJ_P0081533 Tnnt1 protein_coding protein_coding MGP_CASTEiJ_T0015273.1 MGP_CASTEiJ_G0013436.1 mouse_genomes_project 7 92078197 92078675 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005171.1 MGP_CASTEiJ_G0004396.1 mouse_genomes_project 7 139768511 139779251 + Igf2os antisense antisense MGP_CASTEiJ_T0005172.1 MGP_CASTEiJ_G0004396.1 mouse_genomes_project 7 139768530 139769507 + Igf2os antisense antisense MGP_CASTEiJ_T0005173.1 MGP_CASTEiJ_G0004396.1 mouse_genomes_project 7 139774304 139775259 + Igf2os antisense antisense MGP_CASTEiJ_T0098395.1 MGP_CASTEiJ_G0035326.1 mouse_genomes_project 7 64248075 64248598 - pseudogene pseudogene MGP_CASTEiJ_T0082718.1 MGP_CASTEiJ_G0030973.1 mouse_genomes_project 7 20588369 20628652 + MGP_CASTEiJ_P0082718 9530053A07Rik protein_coding protein_coding MGP_CASTEiJ_T0082719.1 MGP_CASTEiJ_G0030973.1 mouse_genomes_project 7 20588719 20600036 + 9530053A07Rik protein_coding retained_intron MGP_CASTEiJ_T0082720.1 MGP_CASTEiJ_G0030973.1 mouse_genomes_project 7 20588719 20602356 + 9530053A07Rik protein_coding retained_intron MGP_CASTEiJ_T0082721.1 MGP_CASTEiJ_G0030973.1 mouse_genomes_project 7 20588719 20628652 + MGP_CASTEiJ_P0082721 9530053A07Rik protein_coding protein_coding MGP_CASTEiJ_T0002164.1 MGP_CASTEiJ_G0002084.1 mouse_genomes_project 7 48784614 48785909 - TEC TEC MGP_CASTEiJ_T0017655.1 MGP_CASTEiJ_G0014999.1 mouse_genomes_project 7 100963473 100966567 + processed_transcript processed_transcript MGP_CASTEiJ_T0087950.1 MGP_CASTEiJ_G0032292.1 mouse_genomes_project 7 140204643 140248120 + MGP_CASTEiJ_P0087950 Kcnq1 protein_coding protein_coding MGP_CASTEiJ_T0087951.1 MGP_CASTEiJ_G0032292.1 mouse_genomes_project 7 140204796 140248120 + MGP_CASTEiJ_P0087951 Kcnq1 protein_coding protein_coding MGP_CASTEiJ_T0087952.1 MGP_CASTEiJ_G0032292.1 mouse_genomes_project 7 140205026 140248120 + MGP_CASTEiJ_P0087952 Kcnq1 protein_coding protein_coding MGP_CASTEiJ_T0087953.1 MGP_CASTEiJ_G0032292.1 mouse_genomes_project 7 140205537 140533220 + MGP_CASTEiJ_P0087953 Kcnq1 protein_coding protein_coding MGP_CASTEiJ_T0087954.1 MGP_CASTEiJ_G0032292.1 mouse_genomes_project 7 140205834 140532297 + MGP_CASTEiJ_P0087954 Kcnq1 protein_coding protein_coding MGP_CASTEiJ_T0087955.1 MGP_CASTEiJ_G0032292.1 mouse_genomes_project 7 140206634 140248120 + MGP_CASTEiJ_P0087955 Kcnq1 protein_coding protein_coding MGP_CASTEiJ_T0087956.1 MGP_CASTEiJ_G0032292.1 mouse_genomes_project 7 140207480 140248120 + MGP_CASTEiJ_P0087956 Kcnq1 protein_coding protein_coding MGP_CASTEiJ_T0102562.1 MGP_CASTEiJ_G0039286.1 mouse_genomes_project 7 79367371 79372423 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0010573.1 MGP_CASTEiJ_G0008761.1 mouse_genomes_project 7 54230789 54230858 - Gm22466 miRNA miRNA MGP_CASTEiJ_T0102571.1 MGP_CASTEiJ_G0039295.1 mouse_genomes_project 7 80224365 80225247 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0085624.1 MGP_CASTEiJ_G0031690.1 mouse_genomes_project 7 98351746 98357174 + MGP_CASTEiJ_P0085624 Olfr613 protein_coding protein_coding MGP_CASTEiJ_T0085421.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96020682 96088535 + MGP_CASTEiJ_P0085421 Arap1 protein_coding protein_coding MGP_CASTEiJ_T0085422.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96035372 96046772 + MGP_CASTEiJ_P0085422 Arap1 protein_coding protein_coding MGP_CASTEiJ_T0085423.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96035584 96046646 + MGP_CASTEiJ_P0085423 Arap1 protein_coding protein_coding MGP_CASTEiJ_T0085424.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96036110 96046781 + MGP_CASTEiJ_P0085424 Arap1 protein_coding protein_coding MGP_CASTEiJ_T0085425.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96046609 96089102 + MGP_CASTEiJ_P0085425 Arap1 protein_coding protein_coding MGP_CASTEiJ_T0085426.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96051820 96088958 + MGP_CASTEiJ_P0085426 Arap1 protein_coding protein_coding MGP_CASTEiJ_T0085427.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96051999 96060187 + MGP_CASTEiJ_P0085427 Arap1 protein_coding protein_coding MGP_CASTEiJ_T0085428.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96056462 96059252 + Arap1 protein_coding processed_transcript MGP_CASTEiJ_T0085429.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96057667 96059857 + MGP_CASTEiJ_P0085429 Arap1 protein_coding protein_coding MGP_CASTEiJ_T0085430.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96059055 96060105 + MGP_CASTEiJ_P0085430 Arap1 protein_coding protein_coding MGP_CASTEiJ_T0085431.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96059060 96060497 + MGP_CASTEiJ_P0085431 Arap1 protein_coding protein_coding MGP_CASTEiJ_T0085432.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96068082 96089801 + MGP_CASTEiJ_P0085432 Arap1 protein_coding protein_coding MGP_CASTEiJ_T0085433.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96068102 96089801 + MGP_CASTEiJ_P0085433 Arap1 protein_coding protein_coding MGP_CASTEiJ_T0085434.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96068369 96069845 + Arap1 protein_coding retained_intron MGP_CASTEiJ_T0085435.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96069562 96072068 + Arap1 protein_coding processed_transcript MGP_CASTEiJ_T0085436.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96072053 96073259 + Arap1 protein_coding processed_transcript MGP_CASTEiJ_T0085437.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96077695 96086314 + Arap1 protein_coding retained_intron MGP_CASTEiJ_T0085438.1 MGP_CASTEiJ_G0031611.1 mouse_genomes_project 7 96084877 96088893 + Arap1 protein_coding retained_intron MGP_CASTEiJ_T0085458.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96574998 96587272 - MGP_CASTEiJ_P0085458 Folr1 protein_coding protein_coding MGP_CASTEiJ_T0085459.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96574998 96580802 - MGP_CASTEiJ_P0085459 Folr1 protein_coding protein_coding MGP_CASTEiJ_T0085460.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96574998 96587248 - MGP_CASTEiJ_P0085460 Folr1 protein_coding protein_coding MGP_CASTEiJ_T0085461.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96574998 96583992 - MGP_CASTEiJ_P0085461 Folr1 protein_coding protein_coding MGP_CASTEiJ_T0085462.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96574998 96587353 - MGP_CASTEiJ_P0085462 Folr1 protein_coding protein_coding MGP_CASTEiJ_T0085463.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96574998 96587346 - MGP_CASTEiJ_P0085463 Folr1 protein_coding protein_coding MGP_CASTEiJ_T0085464.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96575771 96586124 - MGP_CASTEiJ_P0085464 Folr1 protein_coding protein_coding MGP_CASTEiJ_T0085465.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96575781 96587279 - MGP_CASTEiJ_P0085465 Folr1 protein_coding protein_coding MGP_CASTEiJ_T0085466.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96575840 96587351 - MGP_CASTEiJ_P0085466 Folr1 protein_coding protein_coding MGP_CASTEiJ_T0085467.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96576073 96585897 - MGP_CASTEiJ_P0085467 Folr1 protein_coding protein_coding MGP_CASTEiJ_T0085468.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96580579 96587353 - MGP_CASTEiJ_P0085468 Folr1 protein_coding protein_coding MGP_CASTEiJ_T0085469.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96580581 96585595 - MGP_CASTEiJ_P0085469 Folr1 protein_coding protein_coding MGP_CASTEiJ_T0085470.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96580584 96587352 - MGP_CASTEiJ_P0085470 Folr1 protein_coding protein_coding MGP_CASTEiJ_T0085471.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96580617 96585245 - MGP_CASTEiJ_P0085471 Folr1 protein_coding protein_coding MGP_CASTEiJ_T0085472.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96580656 96585895 - MGP_CASTEiJ_P0085472 Folr1 protein_coding protein_coding MGP_CASTEiJ_T0085473.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96580734 96587149 - MGP_CASTEiJ_P0085473 Folr1 protein_coding protein_coding MGP_CASTEiJ_T0085474.1 MGP_CASTEiJ_G0031617.1 mouse_genomes_project 7 96585042 96586670 - Folr1 protein_coding processed_transcript MGP_CASTEiJ_T0082944.1 MGP_CASTEiJ_G0031026.1 mouse_genomes_project 7 22436345 22446414 - Zfp940 protein_coding retained_intron MGP_CASTEiJ_T0082945.1 MGP_CASTEiJ_G0031026.1 mouse_genomes_project 7 22437883 22446462 - MGP_CASTEiJ_P0082945 Zfp940 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082946.1 MGP_CASTEiJ_G0031026.1 mouse_genomes_project 7 22443783 22446215 - Zfp940 protein_coding processed_transcript MGP_CASTEiJ_T0017668.1 MGP_CASTEiJ_G0015006.1 mouse_genomes_project 7 122676592 122682199 + Gm20650 processed_transcript processed_transcript MGP_CASTEiJ_T0082877.1 MGP_CASTEiJ_G0031011.1 mouse_genomes_project 7 21724817 21728478 - MGP_CASTEiJ_P0082877 Fam98c protein_coding protein_coding MGP_CASTEiJ_T0082878.1 MGP_CASTEiJ_G0031011.1 mouse_genomes_project 7 21724820 21728518 - MGP_CASTEiJ_P0082878 Fam98c protein_coding protein_coding MGP_CASTEiJ_T0082879.1 MGP_CASTEiJ_G0031011.1 mouse_genomes_project 7 21724821 21728491 - Fam98c protein_coding retained_intron MGP_CASTEiJ_T0082880.1 MGP_CASTEiJ_G0031011.1 mouse_genomes_project 7 21724821 21728491 - Fam98c protein_coding retained_intron MGP_CASTEiJ_T0082881.1 MGP_CASTEiJ_G0031011.1 mouse_genomes_project 7 21724821 21728511 - Fam98c protein_coding retained_intron MGP_CASTEiJ_T0082882.1 MGP_CASTEiJ_G0031011.1 mouse_genomes_project 7 21724828 21728468 - MGP_CASTEiJ_P0082882 Fam98c protein_coding protein_coding MGP_CASTEiJ_T0082883.1 MGP_CASTEiJ_G0031011.1 mouse_genomes_project 7 21724863 21728027 - MGP_CASTEiJ_P0082883 Fam98c protein_coding protein_coding MGP_CASTEiJ_T0082884.1 MGP_CASTEiJ_G0031011.1 mouse_genomes_project 7 21725702 21728542 - MGP_CASTEiJ_P0082884 Fam98c protein_coding protein_coding MGP_CASTEiJ_T0082885.1 MGP_CASTEiJ_G0031011.1 mouse_genomes_project 7 21725733 21727911 - MGP_CASTEiJ_P0082885 Fam98c protein_coding protein_coding MGP_CASTEiJ_T0082886.1 MGP_CASTEiJ_G0031011.1 mouse_genomes_project 7 21725816 21728511 - Fam98c protein_coding processed_transcript MGP_CASTEiJ_T0083520.1 MGP_CASTEiJ_G0031143.1 mouse_genomes_project 7 31100238 31121237 + MGP_CASTEiJ_P0083520 Zfp619 protein_coding protein_coding MGP_CASTEiJ_T0002147.1 MGP_CASTEiJ_G0002067.1 mouse_genomes_project 7 31123318 31125682 - TEC TEC MGP_CASTEiJ_T0086193.1 MGP_CASTEiJ_G0031920.1 mouse_genomes_project 7 113504759 113516552 - MGP_CASTEiJ_P0086193 Rps15a protein_coding protein_coding MGP_CASTEiJ_T0086194.1 MGP_CASTEiJ_G0031920.1 mouse_genomes_project 7 113504765 113515624 - MGP_CASTEiJ_P0086194 Rps15a protein_coding protein_coding MGP_CASTEiJ_T0086195.1 MGP_CASTEiJ_G0031920.1 mouse_genomes_project 7 113509438 113516041 - MGP_CASTEiJ_P0086195 Rps15a protein_coding protein_coding MGP_CASTEiJ_T0086196.1 MGP_CASTEiJ_G0031920.1 mouse_genomes_project 7 113509543 113515920 - MGP_CASTEiJ_P0086196 Rps15a protein_coding protein_coding MGP_CASTEiJ_T0086197.1 MGP_CASTEiJ_G0031920.1 mouse_genomes_project 7 113510037 113515596 - Rps15a protein_coding retained_intron MGP_CASTEiJ_T0086198.1 MGP_CASTEiJ_G0031920.1 mouse_genomes_project 7 113510372 113516493 - MGP_CASTEiJ_P0086198 Rps15a protein_coding protein_coding MGP_CASTEiJ_T0086199.1 MGP_CASTEiJ_G0031920.1 mouse_genomes_project 7 113515152 113516492 - MGP_CASTEiJ_P0086199 Rps15a protein_coding protein_coding MGP_CASTEiJ_T0082965.1 MGP_CASTEiJ_G0031032.1 mouse_genomes_project 7 22581281 22626005 + MGP_CASTEiJ_P0082965 Zfp568 protein_coding protein_coding MGP_CASTEiJ_T0082966.1 MGP_CASTEiJ_G0031032.1 mouse_genomes_project 7 22582621 22629181 + MGP_CASTEiJ_P0082966 Zfp568 protein_coding protein_coding MGP_CASTEiJ_T0082967.1 MGP_CASTEiJ_G0031032.1 mouse_genomes_project 7 22585092 22624551 + MGP_CASTEiJ_P0082967 Zfp568 protein_coding protein_coding MGP_CASTEiJ_T0082968.1 MGP_CASTEiJ_G0031032.1 mouse_genomes_project 7 22585092 22624551 + MGP_CASTEiJ_P0082968 Zfp568 protein_coding protein_coding MGP_CASTEiJ_T0015215.1 MGP_CASTEiJ_G0013378.1 mouse_genomes_project 7 41089583 41090088 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083009.1 MGP_CASTEiJ_G0031045.1 mouse_genomes_project 7 22867203 22869490 - MGP_CASTEiJ_P0083009 Ovol3 protein_coding protein_coding MGP_CASTEiJ_T0086264.1 MGP_CASTEiJ_G0031935.1 mouse_genomes_project 7 114922468 114938935 - MGP_CASTEiJ_P0086264 Gp2 protein_coding protein_coding MGP_CASTEiJ_T0100030.1 MGP_CASTEiJ_G0036943.1 mouse_genomes_project 7 104014312 104014419 - Gm25450 snRNA snRNA MGP_CASTEiJ_T0087312.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129228115 129258821 - MGP_CASTEiJ_P0087312 Ctbp2 protein_coding protein_coding MGP_CASTEiJ_T0087313.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129228675 129259038 - MGP_CASTEiJ_P0087313 Ctbp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087314.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129228690 129258796 - MGP_CASTEiJ_P0087314 Ctbp2 protein_coding protein_coding MGP_CASTEiJ_T0087315.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129229807 129270921 - MGP_CASTEiJ_P0087315 Ctbp2 protein_coding protein_coding MGP_CASTEiJ_T0087316.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129233898 129268908 - MGP_CASTEiJ_P0087316 Ctbp2 protein_coding protein_coding MGP_CASTEiJ_T0087317.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129238693 129368627 - MGP_CASTEiJ_P0087317 Ctbp2 protein_coding protein_coding MGP_CASTEiJ_T0087318.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129258014 129369873 - Ctbp2 protein_coding processed_transcript MGP_CASTEiJ_T0087319.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129258014 129369770 - Ctbp2 protein_coding processed_transcript MGP_CASTEiJ_T0087320.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129258278 129359163 - Ctbp2 protein_coding processed_transcript MGP_CASTEiJ_T0087321.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129258383 129275297 - Ctbp2 protein_coding processed_transcript MGP_CASTEiJ_T0087322.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129258401 129371979 - Ctbp2 protein_coding processed_transcript MGP_CASTEiJ_T0087323.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129258669 129369042 - MGP_CASTEiJ_P0087323 Ctbp2 protein_coding protein_coding MGP_CASTEiJ_T0087324.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129258711 129369847 - MGP_CASTEiJ_P0087324 Ctbp2 protein_coding protein_coding MGP_CASTEiJ_T0087325.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129270852 129372562 - MGP_CASTEiJ_P0087325 Ctbp2 protein_coding protein_coding MGP_CASTEiJ_T0087326.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129270870 129358253 - MGP_CASTEiJ_P0087326 Ctbp2 protein_coding protein_coding MGP_CASTEiJ_T0087327.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129270871 129369734 - MGP_CASTEiJ_P0087327 Ctbp2 protein_coding protein_coding MGP_CASTEiJ_T0087328.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129270914 129372065 - MGP_CASTEiJ_P0087328 Ctbp2 protein_coding protein_coding MGP_CASTEiJ_T0087329.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129288275 129372065 - Ctbp2 protein_coding processed_transcript MGP_CASTEiJ_T0087330.1 MGP_CASTEiJ_G0032146.1 mouse_genomes_project 7 129326152 129369606 - Ctbp2 protein_coding retained_intron MGP_CASTEiJ_T0101259.1 MGP_CASTEiJ_G0038172.1 mouse_genomes_project 7 93996789 93996934 - Snord15b snoRNA snoRNA MGP_CASTEiJ_T0102596.1 MGP_CASTEiJ_G0039320.1 mouse_genomes_project 7 99668679 99669069 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0083752.1 MGP_CASTEiJ_G0031207.1 mouse_genomes_project 7 37041900 37108261 - MGP_CASTEiJ_P0083752 Myh14 protein_coding protein_coding MGP_CASTEiJ_T0083753.1 MGP_CASTEiJ_G0031207.1 mouse_genomes_project 7 37041900 37108261 - MGP_CASTEiJ_P0083753 Myh14 protein_coding protein_coding MGP_CASTEiJ_T0083216.1 MGP_CASTEiJ_G0031089.1 mouse_genomes_project 7 23629392 23633016 + MGP_CASTEiJ_P0083216 protein_coding protein_coding MGP_CASTEiJ_T0084226.1 MGP_CASTEiJ_G0031340.1 mouse_genomes_project 7 44738437 44880543 + MGP_CASTEiJ_P0084226 Gas2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084227.1 MGP_CASTEiJ_G0031340.1 mouse_genomes_project 7 44738849 44850492 + MGP_CASTEiJ_P0084227 Gas2 protein_coding protein_coding MGP_CASTEiJ_T0084228.1 MGP_CASTEiJ_G0031340.1 mouse_genomes_project 7 44740326 44740820 + Gas2 protein_coding retained_intron MGP_CASTEiJ_T0084229.1 MGP_CASTEiJ_G0031340.1 mouse_genomes_project 7 44758691 44880023 + MGP_CASTEiJ_P0084229 Gas2 protein_coding protein_coding MGP_CASTEiJ_T0084230.1 MGP_CASTEiJ_G0031340.1 mouse_genomes_project 7 44758773 44880028 + MGP_CASTEiJ_P0084230 Gas2 protein_coding protein_coding MGP_CASTEiJ_T0084231.1 MGP_CASTEiJ_G0031340.1 mouse_genomes_project 7 44760041 44826254 + MGP_CASTEiJ_P0084231 Gas2 protein_coding protein_coding MGP_CASTEiJ_T0084232.1 MGP_CASTEiJ_G0031340.1 mouse_genomes_project 7 44807455 44826292 + Gas2 protein_coding processed_transcript MGP_CASTEiJ_T0084233.1 MGP_CASTEiJ_G0031340.1 mouse_genomes_project 7 44826208 44839828 + Gas2 protein_coding processed_transcript MGP_CASTEiJ_T0005487.1 MGP_CASTEiJ_G0004629.1 mouse_genomes_project 7 58429143 58430130 - Gm20684 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_CASTEiJ_T0087606.1 MGP_CASTEiJ_G0032236.1 mouse_genomes_project 7 138035987 138049338 + MGP_CASTEiJ_P0087606 Pkp3 protein_coding protein_coding MGP_CASTEiJ_T0087607.1 MGP_CASTEiJ_G0032236.1 mouse_genomes_project 7 138036916 138040426 + MGP_CASTEiJ_P0087607 Pkp3 protein_coding protein_coding MGP_CASTEiJ_T0087608.1 MGP_CASTEiJ_G0032236.1 mouse_genomes_project 7 138037528 138049338 + MGP_CASTEiJ_P0087608 Pkp3 protein_coding protein_coding MGP_CASTEiJ_T0087609.1 MGP_CASTEiJ_G0032236.1 mouse_genomes_project 7 138037543 138040901 + MGP_CASTEiJ_P0087609 Pkp3 protein_coding protein_coding MGP_CASTEiJ_T0087610.1 MGP_CASTEiJ_G0032236.1 mouse_genomes_project 7 138037548 138040475 + MGP_CASTEiJ_P0087610 Pkp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0087611.1 MGP_CASTEiJ_G0032236.1 mouse_genomes_project 7 138046597 138047714 + Pkp3 protein_coding retained_intron MGP_CASTEiJ_T0087612.1 MGP_CASTEiJ_G0032236.1 mouse_genomes_project 7 138046982 138049335 + Pkp3 protein_coding retained_intron MGP_CASTEiJ_T0087613.1 MGP_CASTEiJ_G0032236.1 mouse_genomes_project 7 138047044 138047685 + Pkp3 protein_coding retained_intron MGP_CASTEiJ_T0087614.1 MGP_CASTEiJ_G0032236.1 mouse_genomes_project 7 138048247 138048744 + Pkp3 protein_coding retained_intron MGP_CASTEiJ_T0087615.1 MGP_CASTEiJ_G0032236.1 mouse_genomes_project 7 138048688 138049337 + MGP_CASTEiJ_P0087615 Pkp3 protein_coding protein_coding MGP_CASTEiJ_T0085580.1 MGP_CASTEiJ_G0031649.1 mouse_genomes_project 7 97452974 97462745 - MGP_CASTEiJ_P0085580 Trim68 protein_coding protein_coding MGP_CASTEiJ_T0085591.1 MGP_CASTEiJ_G0031659.1 mouse_genomes_project 7 97673780 97677302 + MGP_CASTEiJ_P0085591 Olfr570 protein_coding protein_coding MGP_CASTEiJ_T0005015.1 MGP_CASTEiJ_G0004284.1 mouse_genomes_project 7 13745951 13753786 - Mypopos antisense antisense MGP_CASTEiJ_T0005016.1 MGP_CASTEiJ_G0004284.1 mouse_genomes_project 7 13746270 13753813 - Mypopos antisense antisense MGP_CASTEiJ_T0005017.1 MGP_CASTEiJ_G0004284.1 mouse_genomes_project 7 13747470 13749818 - Mypopos antisense antisense MGP_CASTEiJ_T0005018.1 MGP_CASTEiJ_G0004284.1 mouse_genomes_project 7 13749846 13753797 - Mypopos antisense antisense MGP_CASTEiJ_T0081705.1 MGP_CASTEiJ_G0030678.1 mouse_genomes_project 7 3629209 3654177 - MGP_CASTEiJ_P0081705 Zim1 protein_coding protein_coding MGP_CASTEiJ_T0081706.1 MGP_CASTEiJ_G0030678.1 mouse_genomes_project 7 3633749 3654156 - MGP_CASTEiJ_P0081706 Zim1 protein_coding protein_coding MGP_CASTEiJ_T0081707.1 MGP_CASTEiJ_G0030678.1 mouse_genomes_project 7 3634670 3646420 - MGP_CASTEiJ_P0081707 Zim1 protein_coding protein_coding MGP_CASTEiJ_T0015311.1 MGP_CASTEiJ_G0013474.1 mouse_genomes_project 7 122494348 122494822 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0081491.1 MGP_CASTEiJ_G0030611.1 mouse_genomes_project 7 1314845 1337077 - MGP_CASTEiJ_P0081491 Rdh13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081492.1 MGP_CASTEiJ_G0030611.1 mouse_genomes_project 7 1315749 1337125 - MGP_CASTEiJ_P0081492 Rdh13 protein_coding protein_coding MGP_CASTEiJ_T0081493.1 MGP_CASTEiJ_G0030611.1 mouse_genomes_project 7 1325084 1336653 - MGP_CASTEiJ_P0081493 Rdh13 protein_coding protein_coding MGP_CASTEiJ_T0081494.1 MGP_CASTEiJ_G0030611.1 mouse_genomes_project 7 1330905 1337069 - Rdh13 protein_coding retained_intron MGP_CASTEiJ_T0081495.1 MGP_CASTEiJ_G0030611.1 mouse_genomes_project 7 1333150 1337118 - Rdh13 protein_coding processed_transcript MGP_CASTEiJ_T0081496.1 MGP_CASTEiJ_G0030611.1 mouse_genomes_project 7 1334722 1337102 - Rdh13 protein_coding processed_transcript MGP_CASTEiJ_T0085276.1 MGP_CASTEiJ_G0031579.1 mouse_genomes_project 7 94058740 94130536 + MGP_CASTEiJ_P0085276 Arrb1 protein_coding protein_coding MGP_CASTEiJ_T0085277.1 MGP_CASTEiJ_G0031579.1 mouse_genomes_project 7 94058740 94130536 + MGP_CASTEiJ_P0085277 Arrb1 protein_coding protein_coding MGP_CASTEiJ_T0085278.1 MGP_CASTEiJ_G0031579.1 mouse_genomes_project 7 94058936 94127326 + MGP_CASTEiJ_P0085278 Arrb1 protein_coding protein_coding MGP_CASTEiJ_T0085279.1 MGP_CASTEiJ_G0031579.1 mouse_genomes_project 7 94058978 94112658 + MGP_CASTEiJ_P0085279 Arrb1 protein_coding protein_coding MGP_CASTEiJ_T0085280.1 MGP_CASTEiJ_G0031579.1 mouse_genomes_project 7 94062945 94111874 + MGP_CASTEiJ_P0085280 Arrb1 protein_coding protein_coding MGP_CASTEiJ_T0085281.1 MGP_CASTEiJ_G0031579.1 mouse_genomes_project 7 94096200 94111866 + Arrb1 protein_coding processed_transcript MGP_CASTEiJ_T0085282.1 MGP_CASTEiJ_G0031579.1 mouse_genomes_project 7 94103747 94130434 + MGP_CASTEiJ_P0085282 Arrb1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085283.1 MGP_CASTEiJ_G0031579.1 mouse_genomes_project 7 94118335 94124895 + Arrb1 protein_coding retained_intron MGP_CASTEiJ_T0085284.1 MGP_CASTEiJ_G0031579.1 mouse_genomes_project 7 94118356 94124909 + Arrb1 protein_coding retained_intron MGP_CASTEiJ_T0085285.1 MGP_CASTEiJ_G0031579.1 mouse_genomes_project 7 94118363 94123547 + Arrb1 protein_coding retained_intron MGP_CASTEiJ_T0085286.1 MGP_CASTEiJ_G0031579.1 mouse_genomes_project 7 94118365 94123827 + MGP_CASTEiJ_P0085286 Arrb1 protein_coding protein_coding MGP_CASTEiJ_T0087364.1 MGP_CASTEiJ_G0032153.1 mouse_genomes_project 7 130049064 130171355 + MGP_CASTEiJ_P0087364 Fank1 protein_coding protein_coding MGP_CASTEiJ_T0087365.1 MGP_CASTEiJ_G0032153.1 mouse_genomes_project 7 130049091 130170360 + MGP_CASTEiJ_P0087365 Fank1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0087366.1 MGP_CASTEiJ_G0032153.1 mouse_genomes_project 7 130049094 130166702 + MGP_CASTEiJ_P0087366 Fank1 protein_coding protein_coding MGP_CASTEiJ_T0087367.1 MGP_CASTEiJ_G0032153.1 mouse_genomes_project 7 130049145 130170688 + MGP_CASTEiJ_P0087367 Fank1 protein_coding protein_coding MGP_CASTEiJ_T0011362.1 MGP_CASTEiJ_G0009550.1 mouse_genomes_project 7 110187556 110187874 + Gm22669 misc_RNA misc_RNA MGP_CASTEiJ_T0081864.1 MGP_CASTEiJ_G0030742.1 mouse_genomes_project 7 10510152 10516460 - MGP_CASTEiJ_P0081864 Obox6 protein_coding protein_coding MGP_CASTEiJ_T0084017.1 MGP_CASTEiJ_G0031279.1 mouse_genomes_project 7 38308858 38309565 - MGP_CASTEiJ_P0084017 Spaca4 protein_coding protein_coding MGP_CASTEiJ_T0085627.1 MGP_CASTEiJ_G0031693.1 mouse_genomes_project 7 98384064 98385237 + MGP_CASTEiJ_P0085627 protein_coding protein_coding MGP_CASTEiJ_T0101269.1 MGP_CASTEiJ_G0038182.1 mouse_genomes_project 7 106140993 106141161 - Gm23262 snoRNA snoRNA MGP_CASTEiJ_T0002130.1 MGP_CASTEiJ_G0002050.1 mouse_genomes_project 7 13742256 13745492 - TEC TEC MGP_CASTEiJ_T0081874.1 MGP_CASTEiJ_G0030745.1 mouse_genomes_project 7 10610571 10615642 - MGP_CASTEiJ_P0081874 protein_coding protein_coding MGP_CASTEiJ_T0015244.1 MGP_CASTEiJ_G0013407.1 mouse_genomes_project 7 68910834 68911186 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082218.1 MGP_CASTEiJ_G0030841.1 mouse_genomes_project 7 14615438 14631265 - MGP_CASTEiJ_P0082218 Bcam protein_coding protein_coding MGP_CASTEiJ_T0082219.1 MGP_CASTEiJ_G0030841.1 mouse_genomes_project 7 14615864 14616259 - Bcam protein_coding retained_intron MGP_CASTEiJ_T0082220.1 MGP_CASTEiJ_G0030841.1 mouse_genomes_project 7 14622966 14631213 - Bcam protein_coding retained_intron MGP_CASTEiJ_T0082221.1 MGP_CASTEiJ_G0030841.1 mouse_genomes_project 7 14624901 14631734 - MGP_CASTEiJ_P0082221 Bcam protein_coding protein_coding MGP_CASTEiJ_T0082222.1 MGP_CASTEiJ_G0030841.1 mouse_genomes_project 7 14626330 14631213 - MGP_CASTEiJ_P0082222 Bcam protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086047.1 MGP_CASTEiJ_G0031894.1 mouse_genomes_project 7 107351961 107487756 + MGP_CASTEiJ_P0086047 Mical2 protein_coding protein_coding MGP_CASTEiJ_T0086048.1 MGP_CASTEiJ_G0031894.1 mouse_genomes_project 7 107351995 107476610 + MGP_CASTEiJ_P0086048 Mical2 protein_coding protein_coding MGP_CASTEiJ_T0086049.1 MGP_CASTEiJ_G0031894.1 mouse_genomes_project 7 107351995 107442539 + MGP_CASTEiJ_P0086049 Mical2 protein_coding protein_coding MGP_CASTEiJ_T0086050.1 MGP_CASTEiJ_G0031894.1 mouse_genomes_project 7 107397369 107486534 + MGP_CASTEiJ_P0086050 Mical2 protein_coding protein_coding MGP_CASTEiJ_T0086051.1 MGP_CASTEiJ_G0031894.1 mouse_genomes_project 7 107443151 107475730 + Mical2 protein_coding retained_intron MGP_CASTEiJ_T0086052.1 MGP_CASTEiJ_G0031894.1 mouse_genomes_project 7 107474967 107487756 + MGP_CASTEiJ_P0086052 Mical2 protein_coding protein_coding MGP_CASTEiJ_T0002214.1 MGP_CASTEiJ_G0002133.1 mouse_genomes_project 7 86883808 86884127 + TEC TEC MGP_CASTEiJ_T0008614.1 MGP_CASTEiJ_G0006974.1 mouse_genomes_project 7 28589476 28598075 - Gm28078 lincRNA lincRNA MGP_CASTEiJ_T0002154.1 MGP_CASTEiJ_G0002074.1 mouse_genomes_project 7 36714746 36714903 + TEC TEC MGP_CASTEiJ_T0010531.1 MGP_CASTEiJ_G0008719.1 mouse_genomes_project 7 2099002 2100170 - miRNA miRNA MGP_CASTEiJ_T0010595.1 MGP_CASTEiJ_G0008783.1 mouse_genomes_project 7 72751649 72751739 + Mir9-3 miRNA miRNA MGP_CASTEiJ_T0084150.1 MGP_CASTEiJ_G0031309.1 mouse_genomes_project 7 39611017 39650471 - MGP_CASTEiJ_P0084150 Uevld protein_coding protein_coding MGP_CASTEiJ_T0087597.1 MGP_CASTEiJ_G0032229.1 mouse_genomes_project 7 137880856 137882135 - MGP_CASTEiJ_P0087597 Ifitm5 protein_coding protein_coding MGP_CASTEiJ_T0084107.1 MGP_CASTEiJ_G0031301.1 mouse_genomes_project 7 39337042 39360745 - MGP_CASTEiJ_P0084107 Saal1 protein_coding protein_coding MGP_CASTEiJ_T0084108.1 MGP_CASTEiJ_G0031301.1 mouse_genomes_project 7 39340206 39358975 - Saal1 protein_coding retained_intron MGP_CASTEiJ_T0084109.1 MGP_CASTEiJ_G0031301.1 mouse_genomes_project 7 39340241 39360706 - Saal1 protein_coding retained_intron MGP_CASTEiJ_T0084110.1 MGP_CASTEiJ_G0031301.1 mouse_genomes_project 7 39340242 39360766 - MGP_CASTEiJ_P0084110 Saal1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084111.1 MGP_CASTEiJ_G0031301.1 mouse_genomes_project 7 39340243 39340834 - Saal1 protein_coding processed_transcript MGP_CASTEiJ_T0084112.1 MGP_CASTEiJ_G0031301.1 mouse_genomes_project 7 39342156 39360723 - Saal1 protein_coding retained_intron MGP_CASTEiJ_T0084113.1 MGP_CASTEiJ_G0031301.1 mouse_genomes_project 7 39342578 39360726 - Saal1 protein_coding retained_intron MGP_CASTEiJ_T0081368.1 MGP_CASTEiJ_G0030590.1 mouse_genomes_project 7 301727 329298 + MGP_CASTEiJ_P0081368 Cacng8 protein_coding protein_coding MGP_CASTEiJ_T0081369.1 MGP_CASTEiJ_G0030590.1 mouse_genomes_project 7 306812 329255 + MGP_CASTEiJ_P0081369 Cacng8 protein_coding protein_coding MGP_CASTEiJ_T0081370.1 MGP_CASTEiJ_G0030590.1 mouse_genomes_project 7 307113 307648 + MGP_CASTEiJ_P0081370 Cacng8 protein_coding protein_coding MGP_CASTEiJ_T0005154.1 MGP_CASTEiJ_G0004382.1 mouse_genomes_project 7 123413956 123427729 - Gm28198 antisense antisense MGP_CASTEiJ_T0010609.1 MGP_CASTEiJ_G0008797.1 mouse_genomes_project 7 113158509 113158614 + Gm24063 miRNA miRNA MGP_CASTEiJ_T0085730.1 MGP_CASTEiJ_G0031775.1 mouse_genomes_project 7 100466288 100469483 + MGP_CASTEiJ_P0085730 Gm5901 protein_coding protein_coding MGP_CASTEiJ_T0102518.1 MGP_CASTEiJ_G0039242.1 mouse_genomes_project 7 36207137 36277349 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0008675.1 MGP_CASTEiJ_G0007018.1 mouse_genomes_project 7 64891807 64904743 - Gm36633 lincRNA lincRNA MGP_CASTEiJ_T0084580.1 MGP_CASTEiJ_G0031408.1 mouse_genomes_project 7 69348286 70277055 + MGP_CASTEiJ_P0084580 Agbl1 protein_coding protein_coding MGP_CASTEiJ_T0084581.1 MGP_CASTEiJ_G0031408.1 mouse_genomes_project 7 69524931 69836488 + MGP_CASTEiJ_P0084581 Agbl1 protein_coding protein_coding MGP_CASTEiJ_T0084582.1 MGP_CASTEiJ_G0031408.1 mouse_genomes_project 7 69524931 69890910 + MGP_CASTEiJ_P0084582 Agbl1 protein_coding protein_coding MGP_CASTEiJ_T0087799.1 MGP_CASTEiJ_G0032268.1 mouse_genomes_project 7 138787128 138821691 + MGP_CASTEiJ_P0087799 Muc5ac protein_coding protein_coding MGP_CASTEiJ_T0087800.1 MGP_CASTEiJ_G0032268.1 mouse_genomes_project 7 138787128 138821903 + MGP_CASTEiJ_P0087800 Muc5ac protein_coding protein_coding MGP_CASTEiJ_T0087801.1 MGP_CASTEiJ_G0032268.1 mouse_genomes_project 7 138787184 138821999 + MGP_CASTEiJ_P0087801 Muc5ac protein_coding protein_coding MGP_CASTEiJ_T0085123.1 MGP_CASTEiJ_G0031545.1 mouse_genomes_project 7 91364208 91478791 + MGP_CASTEiJ_P0085123 Nars2 protein_coding protein_coding MGP_CASTEiJ_T0085124.1 MGP_CASTEiJ_G0031545.1 mouse_genomes_project 7 91364224 91413496 + Nars2 protein_coding processed_transcript MGP_CASTEiJ_T0085125.1 MGP_CASTEiJ_G0031545.1 mouse_genomes_project 7 91364265 91454033 + MGP_CASTEiJ_P0085125 Nars2 protein_coding protein_coding MGP_CASTEiJ_T0085126.1 MGP_CASTEiJ_G0031545.1 mouse_genomes_project 7 91437055 91476977 + MGP_CASTEiJ_P0085126 Nars2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085127.1 MGP_CASTEiJ_G0031545.1 mouse_genomes_project 7 91453393 91477007 + MGP_CASTEiJ_P0085127 Nars2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085711.1 MGP_CASTEiJ_G0031757.1 mouse_genomes_project 7 99960072 99961026 + MGP_CASTEiJ_P0085711 Olfr669 protein_coding protein_coding MGP_CASTEiJ_T0102454.1 MGP_CASTEiJ_G0039179.1 mouse_genomes_project 7 5910382 5911246 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015203.1 MGP_CASTEiJ_G0013366.1 mouse_genomes_project 7 34938244 34938745 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002135.1 MGP_CASTEiJ_G0002055.1 mouse_genomes_project 7 25614149 25618032 + TEC TEC MGP_CASTEiJ_T0083773.1 MGP_CASTEiJ_G0031213.1 mouse_genomes_project 7 37263047 37266454 - MGP_CASTEiJ_P0083773 Atf5 protein_coding protein_coding MGP_CASTEiJ_T0083774.1 MGP_CASTEiJ_G0031213.1 mouse_genomes_project 7 37263048 37267398 - MGP_CASTEiJ_P0083774 Atf5 protein_coding protein_coding MGP_CASTEiJ_T0100016.1 MGP_CASTEiJ_G0036929.1 mouse_genomes_project 7 71061795 71061976 - Gm23239 snRNA snRNA MGP_CASTEiJ_T0015179.1 MGP_CASTEiJ_G0013342.1 mouse_genomes_project 7 24965619 24966378 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100011.1 MGP_CASTEiJ_G0036924.1 mouse_genomes_project 7 54602964 54603071 - Gm23431 snRNA snRNA MGP_CASTEiJ_T0083575.1 MGP_CASTEiJ_G0031162.1 mouse_genomes_project 7 35615351 35635969 + MGP_CASTEiJ_P0083575 Gm45233 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0083577.1 MGP_CASTEiJ_G0031162.1 mouse_genomes_project 7 35615354 35636052 + MGP_CASTEiJ_P0083577 Gm45233 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0015155.1 MGP_CASTEiJ_G0013318.1 mouse_genomes_project 7 16942455 16942658 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102570.1 MGP_CASTEiJ_G0039294.1 mouse_genomes_project 7 80224342 80225281 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0015257.1 MGP_CASTEiJ_G0013420.1 mouse_genomes_project 7 78504368 78505488 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0083179.1 MGP_CASTEiJ_G0031082.1 mouse_genomes_project 7 23445986 23447854 + Krtdap protein_coding retained_intron MGP_CASTEiJ_T0083180.1 MGP_CASTEiJ_G0031082.1 mouse_genomes_project 7 23445995 23450353 + MGP_CASTEiJ_P0083180 Krtdap protein_coding protein_coding MGP_CASTEiJ_T0083181.1 MGP_CASTEiJ_G0031082.1 mouse_genomes_project 7 23445995 23450369 + MGP_CASTEiJ_P0083181 Krtdap protein_coding protein_coding MGP_CASTEiJ_T0083182.1 MGP_CASTEiJ_G0031082.1 mouse_genomes_project 7 23445995 23450375 + MGP_CASTEiJ_P0083182 Krtdap protein_coding protein_coding MGP_CASTEiJ_T0083183.1 MGP_CASTEiJ_G0031082.1 mouse_genomes_project 7 23445995 23450383 + MGP_CASTEiJ_P0083183 Krtdap protein_coding protein_coding MGP_CASTEiJ_T0083184.1 MGP_CASTEiJ_G0031082.1 mouse_genomes_project 7 23445995 23450371 + MGP_CASTEiJ_P0083184 Krtdap protein_coding protein_coding MGP_CASTEiJ_T0083185.1 MGP_CASTEiJ_G0031082.1 mouse_genomes_project 7 23447892 23450371 + Krtdap protein_coding retained_intron MGP_CASTEiJ_T0083186.1 MGP_CASTEiJ_G0031082.1 mouse_genomes_project 7 23447944 23450369 + Krtdap protein_coding retained_intron MGP_CASTEiJ_T0083187.1 MGP_CASTEiJ_G0031082.1 mouse_genomes_project 7 23448578 23450371 + Krtdap protein_coding retained_intron MGP_CASTEiJ_T0002166.1 MGP_CASTEiJ_G0002086.1 mouse_genomes_project 7 48828779 48832799 - TEC TEC MGP_CASTEiJ_T0100003.1 MGP_CASTEiJ_G0036916.1 mouse_genomes_project 7 29742472 29742540 - Gm22203 snRNA snRNA MGP_CASTEiJ_T0005034.1 MGP_CASTEiJ_G0004296.1 mouse_genomes_project 7 19121374 19124245 - Gm44963 antisense antisense MGP_CASTEiJ_T0005153.1 MGP_CASTEiJ_G0004381.1 mouse_genomes_project 7 123361909 123364341 - 1700008J07Rik antisense antisense MGP_CASTEiJ_T0085951.1 MGP_CASTEiJ_G0031873.1 mouse_genomes_project 7 104712662 104729232 - MGP_CASTEiJ_P0085951 Tmem9b protein_coding protein_coding MGP_CASTEiJ_T0085952.1 MGP_CASTEiJ_G0031873.1 mouse_genomes_project 7 104722345 104729224 - MGP_CASTEiJ_P0085952 Tmem9b protein_coding protein_coding MGP_CASTEiJ_T0002204.1 MGP_CASTEiJ_G0002123.1 mouse_genomes_project 7 72759258 72759595 + TEC TEC MGP_CASTEiJ_T0086503.1 MGP_CASTEiJ_G0031996.1 mouse_genomes_project 7 121327727 121430581 - MGP_CASTEiJ_P0086503 Gtf3c1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0086504.1 MGP_CASTEiJ_G0031996.1 mouse_genomes_project 7 121362706 121430657 - MGP_CASTEiJ_P0086504 Gtf3c1 protein_coding protein_coding MGP_CASTEiJ_T0086505.1 MGP_CASTEiJ_G0031996.1 mouse_genomes_project 7 121362706 121430554 - MGP_CASTEiJ_P0086505 Gtf3c1 protein_coding protein_coding MGP_CASTEiJ_T0086506.1 MGP_CASTEiJ_G0031996.1 mouse_genomes_project 7 121365931 121371660 - Gtf3c1 protein_coding retained_intron MGP_CASTEiJ_T0086507.1 MGP_CASTEiJ_G0031996.1 mouse_genomes_project 7 121369212 121377589 - MGP_CASTEiJ_P0086507 Gtf3c1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086508.1 MGP_CASTEiJ_G0031996.1 mouse_genomes_project 7 121383596 121430637 - Gtf3c1 protein_coding retained_intron MGP_CASTEiJ_T0086509.1 MGP_CASTEiJ_G0031996.1 mouse_genomes_project 7 121383908 121430619 - MGP_CASTEiJ_P0086509 Gtf3c1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086510.1 MGP_CASTEiJ_G0031996.1 mouse_genomes_project 7 121384028 121390619 - MGP_CASTEiJ_P0086510 Gtf3c1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086511.1 MGP_CASTEiJ_G0031996.1 mouse_genomes_project 7 121389270 121391386 - Gtf3c1 protein_coding retained_intron MGP_CASTEiJ_T0086512.1 MGP_CASTEiJ_G0031996.1 mouse_genomes_project 7 121412815 121421309 - Gtf3c1 protein_coding retained_intron MGP_CASTEiJ_T0086513.1 MGP_CASTEiJ_G0031996.1 mouse_genomes_project 7 121414821 121429400 - MGP_CASTEiJ_P0086513 Gtf3c1 protein_coding protein_coding MGP_CASTEiJ_T0015110.1 MGP_CASTEiJ_G0013273.1 mouse_genomes_project 7 870348 871180 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0082469.1 MGP_CASTEiJ_G0030908.1 mouse_genomes_project 7 17614360 17677134 + MGP_CASTEiJ_P0082469 Megf8 protein_coding protein_coding MGP_CASTEiJ_T0082470.1 MGP_CASTEiJ_G0030908.1 mouse_genomes_project 7 17655701 17677131 + Megf8 protein_coding retained_intron MGP_CASTEiJ_T0087246.1 MGP_CASTEiJ_G0032127.1 mouse_genomes_project 7 127453183 127456908 - MGP_CASTEiJ_P0087246 1700007K09Rik protein_coding protein_coding MGP_CASTEiJ_T0087247.1 MGP_CASTEiJ_G0032127.1 mouse_genomes_project 7 127453338 127454565 - MGP_CASTEiJ_P0087247 1700007K09Rik protein_coding protein_coding MGP_CASTEiJ_T0085002.1 MGP_CASTEiJ_G0031507.1 mouse_genomes_project 7 80664744 80665745 - MGP_CASTEiJ_P0085002 protein_coding protein_coding MGP_CASTEiJ_T0015324.1 MGP_CASTEiJ_G0013487.1 mouse_genomes_project 7 124622870 124623320 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015282.1 MGP_CASTEiJ_G0013445.1 mouse_genomes_project 7 95819122 95819634 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102560.1 MGP_CASTEiJ_G0039284.1 mouse_genomes_project 7 78994604 79252873 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0084897.1 MGP_CASTEiJ_G0031466.1 mouse_genomes_project 7 75226039 75232592 + MGP_CASTEiJ_P0084897 protein_coding protein_coding MGP_CASTEiJ_T0084898.1 MGP_CASTEiJ_G0031466.1 mouse_genomes_project 7 75226164 75230760 + MGP_CASTEiJ_P0084898 protein_coding protein_coding MGP_CASTEiJ_T0085562.1 MGP_CASTEiJ_G0031633.1 mouse_genomes_project 7 96990117 97001100 - MGP_CASTEiJ_P0085562 Rhog protein_coding protein_coding MGP_CASTEiJ_T0085563.1 MGP_CASTEiJ_G0031633.1 mouse_genomes_project 7 96990117 97001065 - MGP_CASTEiJ_P0085563 Rhog protein_coding protein_coding MGP_CASTEiJ_T0083147.1 MGP_CASTEiJ_G0031072.1 mouse_genomes_project 7 23289770 23292017 - MGP_CASTEiJ_P0083147 Etv2 protein_coding protein_coding MGP_CASTEiJ_T0085939.1 MGP_CASTEiJ_G0031869.1 mouse_genomes_project 7 104489085 104586106 - MGP_CASTEiJ_P0085939 St5 protein_coding protein_coding MGP_CASTEiJ_T0085940.1 MGP_CASTEiJ_G0031869.1 mouse_genomes_project 7 104489085 104586106 - MGP_CASTEiJ_P0085940 St5 protein_coding protein_coding MGP_CASTEiJ_T0085941.1 MGP_CASTEiJ_G0031869.1 mouse_genomes_project 7 104489094 104585527 - MGP_CASTEiJ_P0085941 St5 protein_coding protein_coding MGP_CASTEiJ_T0085942.1 MGP_CASTEiJ_G0031869.1 mouse_genomes_project 7 104489094 104585527 - MGP_CASTEiJ_P0085942 St5 protein_coding protein_coding MGP_CASTEiJ_T0083632.1 MGP_CASTEiJ_G0031180.1 mouse_genomes_project 7 36026250 36031185 + MGP_CASTEiJ_P0083632 Klk7 protein_coding protein_coding MGP_CASTEiJ_T0083087.1 MGP_CASTEiJ_G0031063.1 mouse_genomes_project 7 23200511 23203764 + Hspb6 protein_coding processed_transcript MGP_CASTEiJ_T0083088.1 MGP_CASTEiJ_G0031063.1 mouse_genomes_project 7 23200857 23203763 + Hspb6 protein_coding processed_transcript MGP_CASTEiJ_T0083089.1 MGP_CASTEiJ_G0031063.1 mouse_genomes_project 7 23201601 23203767 + MGP_CASTEiJ_P0083089 Hspb6 protein_coding protein_coding MGP_CASTEiJ_T0083090.1 MGP_CASTEiJ_G0031063.1 mouse_genomes_project 7 23202209 23202968 + Hspb6 protein_coding processed_transcript MGP_CASTEiJ_T0005176.1 MGP_CASTEiJ_G0004398.1 mouse_genomes_project 7 140233606 140239201 - Gm28821 antisense antisense MGP_CASTEiJ_T0101224.1 MGP_CASTEiJ_G0038137.1 mouse_genomes_project 7 10635675 10635784 - Snord23 snoRNA snoRNA MGP_CASTEiJ_T0002167.1 MGP_CASTEiJ_G0002087.1 mouse_genomes_project 7 50589656 50591893 + TEC TEC MGP_CASTEiJ_T0085856.1 MGP_CASTEiJ_G0031815.1 mouse_genomes_project 7 101993473 101994427 + MGP_CASTEiJ_P0085856 Olfr714 protein_coding protein_coding MGP_CASTEiJ_T0005045.1 MGP_CASTEiJ_G0004306.1 mouse_genomes_project 7 23213101 23213721 - antisense antisense MGP_CASTEiJ_T0010575.1 MGP_CASTEiJ_G0008763.1 mouse_genomes_project 7 54265531 54265629 - Gm23917 miRNA miRNA MGP_CASTEiJ_T0085721.1 MGP_CASTEiJ_G0031767.1 mouse_genomes_project 7 100286239 100287257 - MGP_CASTEiJ_P0085721 Olfr686 protein_coding protein_coding MGP_CASTEiJ_T0081879.1 MGP_CASTEiJ_G0030747.1 mouse_genomes_project 7 10643877 10665959 - MGP_CASTEiJ_P0081879 Ehd2 protein_coding protein_coding MGP_CASTEiJ_T0081880.1 MGP_CASTEiJ_G0030747.1 mouse_genomes_project 7 10656433 10665867 - MGP_CASTEiJ_P0081880 Ehd2 protein_coding protein_coding MGP_CASTEiJ_T0008738.1 MGP_CASTEiJ_G0007059.1 mouse_genomes_project 7 88293121 88625563 + lincRNA lincRNA MGP_CASTEiJ_T0008739.1 MGP_CASTEiJ_G0007059.1 mouse_genomes_project 7 88293182 89019269 + lincRNA lincRNA MGP_CASTEiJ_T0100041.1 MGP_CASTEiJ_G0036954.1 mouse_genomes_project 7 119629210 119629316 - Gm23788 snRNA snRNA MGP_CASTEiJ_T0087543.1 MGP_CASTEiJ_G0032214.1 mouse_genomes_project 7 137609699 137610631 + MGP_CASTEiJ_P0087543 Olfr45 protein_coding protein_coding MGP_CASTEiJ_T0084060.1 MGP_CASTEiJ_G0031289.1 mouse_genomes_project 7 38523273 38526102 - MGP_CASTEiJ_P0084060 Emp3 protein_coding protein_coding MGP_CASTEiJ_T0084061.1 MGP_CASTEiJ_G0031289.1 mouse_genomes_project 7 38523273 38526679 - MGP_CASTEiJ_P0084061 Emp3 protein_coding protein_coding MGP_CASTEiJ_T0085128.1 MGP_CASTEiJ_G0031546.1 mouse_genomes_project 7 91494553 91701943 + MGP_CASTEiJ_P0085128 Gab2 protein_coding protein_coding MGP_CASTEiJ_T0085129.1 MGP_CASTEiJ_G0031546.1 mouse_genomes_project 7 91494735 91698118 + MGP_CASTEiJ_P0085129 Gab2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085130.1 MGP_CASTEiJ_G0031546.1 mouse_genomes_project 7 91494738 91698103 + MGP_CASTEiJ_P0085130 Gab2 protein_coding protein_coding MGP_CASTEiJ_T0085737.1 MGP_CASTEiJ_G0031776.1 mouse_genomes_project 7 100496532 100501094 + MGP_CASTEiJ_P0085737 Cnga4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0085738.1 MGP_CASTEiJ_G0031776.1 mouse_genomes_project 7 100497270 100501439 + MGP_CASTEiJ_P0085738 Cnga4 protein_coding protein_coding MGP_CASTEiJ_T0084337.1 MGP_CASTEiJ_G0031364.1 mouse_genomes_project 7 55947783 56276347 + MGP_CASTEiJ_P0084337 Otud7a protein_coding protein_coding MGP_CASTEiJ_T0084338.1 MGP_CASTEiJ_G0031364.1 mouse_genomes_project 7 55947809 56131952 + Otud7a protein_coding processed_transcript MGP_CASTEiJ_T0084339.1 MGP_CASTEiJ_G0031364.1 mouse_genomes_project 7 56164435 56275308 + MGP_CASTEiJ_P0084339 Otud7a protein_coding protein_coding MGP_CASTEiJ_T0084340.1 MGP_CASTEiJ_G0031364.1 mouse_genomes_project 7 56198346 56277794 + MGP_CASTEiJ_P0084340 Otud7a protein_coding unknown_likely_coding MGP_CASTEiJ_T0084341.1 MGP_CASTEiJ_G0031364.1 mouse_genomes_project 7 56198803 56276050 + MGP_CASTEiJ_P0084341 Otud7a protein_coding unknown_likely_coding MGP_CASTEiJ_T0084342.1 MGP_CASTEiJ_G0031364.1 mouse_genomes_project 7 56272033 56275244 + MGP_CASTEiJ_P0084342 Otud7a protein_coding protein_coding MGP_CASTEiJ_T0086584.1 MGP_CASTEiJ_G0032007.1 mouse_genomes_project 7 122221171 122229227 - MGP_CASTEiJ_P0086584 Sh2b1 protein_coding protein_coding MGP_CASTEiJ_T0086585.1 MGP_CASTEiJ_G0032007.1 mouse_genomes_project 7 122221173 122229240 - MGP_CASTEiJ_P0086585 Sh2b1 protein_coding protein_coding MGP_CASTEiJ_T0086586.1 MGP_CASTEiJ_G0032007.1 mouse_genomes_project 7 122221174 122229267 - MGP_CASTEiJ_P0086586 Sh2b1 protein_coding protein_coding MGP_CASTEiJ_T0086587.1 MGP_CASTEiJ_G0032007.1 mouse_genomes_project 7 122221176 122228959 - MGP_CASTEiJ_P0086587 Sh2b1 protein_coding protein_coding MGP_CASTEiJ_T0086588.1 MGP_CASTEiJ_G0032007.1 mouse_genomes_project 7 122221176 122228961 - MGP_CASTEiJ_P0086588 Sh2b1 protein_coding protein_coding MGP_CASTEiJ_T0086589.1 MGP_CASTEiJ_G0032007.1 mouse_genomes_project 7 122221176 122227210 - MGP_CASTEiJ_P0086589 Sh2b1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0086590.1 MGP_CASTEiJ_G0032007.1 mouse_genomes_project 7 122221182 122229187 - MGP_CASTEiJ_P0086590 Sh2b1 protein_coding protein_coding MGP_CASTEiJ_T0086591.1 MGP_CASTEiJ_G0032007.1 mouse_genomes_project 7 122223076 122224364 - Sh2b1 protein_coding processed_transcript MGP_CASTEiJ_T0086592.1 MGP_CASTEiJ_G0032007.1 mouse_genomes_project 7 122226933 122229561 - MGP_CASTEiJ_P0086592 Sh2b1 protein_coding protein_coding MGP_CASTEiJ_T0010523.1 MGP_CASTEiJ_G0008711.1 mouse_genomes_project 7 110135 110197 - Mir292b miRNA miRNA MGP_CASTEiJ_T0015317.1 MGP_CASTEiJ_G0013480.1 mouse_genomes_project 7 123253872 123254044 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0086318.1 MGP_CASTEiJ_G0031951.1 mouse_genomes_project 7 115695858 115705910 + MGP_CASTEiJ_P0086318 Anks4b protein_coding protein_coding MGP_CASTEiJ_T0010566.1 MGP_CASTEiJ_G0008754.1 mouse_genomes_project 7 46855932 46856040 - Gm27921 miRNA miRNA MGP_CASTEiJ_T0102600.1 MGP_CASTEiJ_G0039324.1 mouse_genomes_project 7 101072597 101076191 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0082759.1 MGP_CASTEiJ_G0030986.1 mouse_genomes_project 7 20876823 20883354 + MGP_CASTEiJ_P0082759 Paf1 protein_coding protein_coding MGP_CASTEiJ_T0082760.1 MGP_CASTEiJ_G0030986.1 mouse_genomes_project 7 20876834 20877896 + Paf1 protein_coding retained_intron MGP_CASTEiJ_T0082761.1 MGP_CASTEiJ_G0030986.1 mouse_genomes_project 7 20876913 20883348 + Paf1 protein_coding retained_intron MGP_CASTEiJ_T0082762.1 MGP_CASTEiJ_G0030986.1 mouse_genomes_project 7 20877033 20879629 + Paf1 protein_coding retained_intron MGP_CASTEiJ_T0082763.1 MGP_CASTEiJ_G0030986.1 mouse_genomes_project 7 20877055 20883355 + MGP_CASTEiJ_P0082763 Paf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082764.1 MGP_CASTEiJ_G0030986.1 mouse_genomes_project 7 20877330 20879547 + Paf1 protein_coding retained_intron MGP_CASTEiJ_T0082765.1 MGP_CASTEiJ_G0030986.1 mouse_genomes_project 7 20878614 20879651 + Paf1 protein_coding retained_intron MGP_CASTEiJ_T0082766.1 MGP_CASTEiJ_G0030986.1 mouse_genomes_project 7 20879276 20879931 + Paf1 protein_coding retained_intron MGP_CASTEiJ_T0082767.1 MGP_CASTEiJ_G0030986.1 mouse_genomes_project 7 20879676 20882708 + Paf1 protein_coding retained_intron MGP_CASTEiJ_T0082768.1 MGP_CASTEiJ_G0030986.1 mouse_genomes_project 7 20882398 20883025 + Paf1 protein_coding processed_transcript MGP_CASTEiJ_T0085863.1 MGP_CASTEiJ_G0031821.1 mouse_genomes_project 7 102127871 102129343 + MGP_CASTEiJ_P0085863 Rbmxl2 protein_coding protein_coding MGP_CASTEiJ_T0005108.1 MGP_CASTEiJ_G0004352.1 mouse_genomes_project 7 83643165 83644527 + Prss23os antisense antisense MGP_CASTEiJ_T0005109.1 MGP_CASTEiJ_G0004352.1 mouse_genomes_project 7 83643181 83643650 + Prss23os antisense antisense MGP_CASTEiJ_T0005150.1 MGP_CASTEiJ_G0004379.1 mouse_genomes_project 7 122416963 122418016 - 2510046G10Rik antisense antisense MGP_CASTEiJ_T0005151.1 MGP_CASTEiJ_G0004379.1 mouse_genomes_project 7 122417644 122417992 - 2510046G10Rik antisense antisense MGP_CASTEiJ_T0008683.1 MGP_CASTEiJ_G0007026.1 mouse_genomes_project 7 66163237 66166511 + Gm44670 lincRNA lincRNA MGP_CASTEiJ_T0008684.1 MGP_CASTEiJ_G0007026.1 mouse_genomes_project 7 66163296 66166945 + Gm44670 lincRNA lincRNA MGP_CASTEiJ_T0086983.1 MGP_CASTEiJ_G0032079.1 mouse_genomes_project 7 123633416 123638758 + MGP_CASTEiJ_P0086983 Orai3 protein_coding protein_coding MGP_CASTEiJ_T0086984.1 MGP_CASTEiJ_G0032079.1 mouse_genomes_project 7 123633416 123638299 + MGP_CASTEiJ_P0086984 Orai3 protein_coding protein_coding MGP_CASTEiJ_T0086985.1 MGP_CASTEiJ_G0032079.1 mouse_genomes_project 7 123633416 123638758 + MGP_CASTEiJ_P0086985 Orai3 protein_coding protein_coding MGP_CASTEiJ_T0002221.1 MGP_CASTEiJ_G0002140.1 mouse_genomes_project 7 117447400 117449095 - TEC TEC MGP_CASTEiJ_T0099011.1 MGP_CASTEiJ_G0035930.1 mouse_genomes_project 7 114988509 114990842 - Gm26967 sense_intronic sense_intronic MGP_CASTEiJ_T0010571.1 MGP_CASTEiJ_G0008759.1 mouse_genomes_project 7 54205797 54205876 - Mir344d-2 miRNA miRNA MGP_CASTEiJ_T0085850.1 MGP_CASTEiJ_G0031809.1 mouse_genomes_project 7 101852518 101853442 - MGP_CASTEiJ_P0085850 Olfr709-ps1 protein_coding protein_coding MGP_CASTEiJ_T0002170.1 MGP_CASTEiJ_G0002090.1 mouse_genomes_project 7 56769234 56769670 - TEC TEC MGP_CASTEiJ_T0085364.1 MGP_CASTEiJ_G0031601.1 mouse_genomes_project 7 95228819 95273210 + MGP_CASTEiJ_P0085364 Rab6a protein_coding protein_coding MGP_CASTEiJ_T0085365.1 MGP_CASTEiJ_G0031601.1 mouse_genomes_project 7 95228996 95273210 + MGP_CASTEiJ_P0085365 Rab6a protein_coding protein_coding MGP_CASTEiJ_T0085366.1 MGP_CASTEiJ_G0031601.1 mouse_genomes_project 7 95229100 95273210 + MGP_CASTEiJ_P0085366 Rab6a protein_coding protein_coding MGP_CASTEiJ_T0085367.1 MGP_CASTEiJ_G0031601.1 mouse_genomes_project 7 95266311 95271309 + Rab6a protein_coding retained_intron MGP_CASTEiJ_T0017690.1 MGP_CASTEiJ_G0015019.1 mouse_genomes_project 7 140117775 140150108 - R74862 processed_transcript processed_transcript MGP_CASTEiJ_T0017691.1 MGP_CASTEiJ_G0015019.1 mouse_genomes_project 7 140128634 140150377 - R74862 processed_transcript processed_transcript MGP_CASTEiJ_T0017692.1 MGP_CASTEiJ_G0015019.1 mouse_genomes_project 7 140129301 140150368 - R74862 processed_transcript processed_transcript MGP_CASTEiJ_T0086490.1 MGP_CASTEiJ_G0031991.1 mouse_genomes_project 7 119678777 120114970 + MGP_CASTEiJ_P0086490 Hs3st4 protein_coding protein_coding MGP_CASTEiJ_T0081625.1 MGP_CASTEiJ_G0030639.1 mouse_genomes_project 7 1911691 1917348 - MGP_CASTEiJ_P0081625 Sbk3 protein_coding protein_coding MGP_CASTEiJ_T0081626.1 MGP_CASTEiJ_G0030639.1 mouse_genomes_project 7 1913777 1917555 - MGP_CASTEiJ_P0081626 Sbk3 protein_coding protein_coding MGP_CASTEiJ_T0084501.1 MGP_CASTEiJ_G0031392.1 mouse_genomes_project 7 60298140 60380623 + MGP_CASTEiJ_P0084501 Ttc23 protein_coding unknown_likely_coding MGP_CASTEiJ_T0084502.1 MGP_CASTEiJ_G0031392.1 mouse_genomes_project 7 60300102 60325261 + Ttc23 protein_coding retained_intron MGP_CASTEiJ_T0084503.1 MGP_CASTEiJ_G0031392.1 mouse_genomes_project 7 60300102 60381055 + MGP_CASTEiJ_P0084503 Ttc23 protein_coding protein_coding MGP_CASTEiJ_T0084504.1 MGP_CASTEiJ_G0031392.1 mouse_genomes_project 7 60300117 60381057 + MGP_CASTEiJ_P0084504 Ttc23 protein_coding protein_coding MGP_CASTEiJ_T0084505.1 MGP_CASTEiJ_G0031392.1 mouse_genomes_project 7 60300142 60381057 + Ttc23 protein_coding processed_transcript MGP_CASTEiJ_T0084506.1 MGP_CASTEiJ_G0031392.1 mouse_genomes_project 7 60300146 60301887 + Ttc23 protein_coding processed_transcript MGP_CASTEiJ_T0084507.1 MGP_CASTEiJ_G0031392.1 mouse_genomes_project 7 60300152 60313540 + Ttc23 protein_coding processed_transcript MGP_CASTEiJ_T0084508.1 MGP_CASTEiJ_G0031392.1 mouse_genomes_project 7 60301849 60332072 + Ttc23 protein_coding processed_transcript MGP_CASTEiJ_T0084509.1 MGP_CASTEiJ_G0031392.1 mouse_genomes_project 7 60307913 60332322 + Ttc23 protein_coding processed_transcript MGP_CASTEiJ_T0084510.1 MGP_CASTEiJ_G0031392.1 mouse_genomes_project 7 60308183 60381054 + MGP_CASTEiJ_P0084510 Ttc23 protein_coding protein_coding MGP_CASTEiJ_T0084511.1 MGP_CASTEiJ_G0031392.1 mouse_genomes_project 7 60319477 60322655 + Ttc23 protein_coding processed_transcript MGP_CASTEiJ_T0084512.1 MGP_CASTEiJ_G0031392.1 mouse_genomes_project 7 60322673 60352781 + Ttc23 protein_coding processed_transcript MGP_CASTEiJ_T0084513.1 MGP_CASTEiJ_G0031392.1 mouse_genomes_project 7 60332295 60380533 + Ttc23 protein_coding processed_transcript MGP_CASTEiJ_T0084514.1 MGP_CASTEiJ_G0031392.1 mouse_genomes_project 7 60379749 60380495 + Ttc23 protein_coding processed_transcript MGP_CASTEiJ_T0101257.1 MGP_CASTEiJ_G0038170.1 mouse_genomes_project 7 91929846 91929955 + Gm24412 snoRNA snoRNA MGP_CASTEiJ_T0101832.1 MGP_CASTEiJ_G0038588.1 mouse_genomes_project 7 36139257 36143679 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0101833.1 MGP_CASTEiJ_G0038588.1 mouse_genomes_project 7 36141059 36145193 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0002123.1 MGP_CASTEiJ_G0002043.1 mouse_genomes_project 7 245280 245615 + TEC TEC MGP_CASTEiJ_T0084249.1 MGP_CASTEiJ_G0031345.1 mouse_genomes_project 7 48605586 48642613 + MGP_CASTEiJ_P0084249 Tubgcp5 protein_coding protein_coding MGP_CASTEiJ_T0084250.1 MGP_CASTEiJ_G0031345.1 mouse_genomes_project 7 48605597 48638199 + Tubgcp5 protein_coding retained_intron MGP_CASTEiJ_T0084251.1 MGP_CASTEiJ_G0031345.1 mouse_genomes_project 7 48605600 48642382 + MGP_CASTEiJ_P0084251 Tubgcp5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0084252.1 MGP_CASTEiJ_G0031345.1 mouse_genomes_project 7 48605624 48642382 + MGP_CASTEiJ_P0084252 Tubgcp5 protein_coding protein_coding MGP_CASTEiJ_T0084253.1 MGP_CASTEiJ_G0031345.1 mouse_genomes_project 7 48605658 48610249 + MGP_CASTEiJ_P0084253 Tubgcp5 protein_coding protein_coding MGP_CASTEiJ_T0084254.1 MGP_CASTEiJ_G0031345.1 mouse_genomes_project 7 48615983 48620342 + Tubgcp5 protein_coding retained_intron MGP_CASTEiJ_T0084255.1 MGP_CASTEiJ_G0031345.1 mouse_genomes_project 7 48617665 48628832 + Tubgcp5 protein_coding retained_intron MGP_CASTEiJ_T0084256.1 MGP_CASTEiJ_G0031345.1 mouse_genomes_project 7 48628379 48630098 + Tubgcp5 protein_coding retained_intron MGP_CASTEiJ_T0002236.1 MGP_CASTEiJ_G0002155.1 mouse_genomes_project 7 122979977 122981219 - TEC TEC MGP_CASTEiJ_T0083644.1 MGP_CASTEiJ_G0031187.1 mouse_genomes_project 7 36203532 36205140 + protein_coding retained_intron MGP_CASTEiJ_T0083645.1 MGP_CASTEiJ_G0031187.1 mouse_genomes_project 7 36203532 36205588 + MGP_CASTEiJ_P0083645 protein_coding protein_coding MGP_CASTEiJ_T0083646.1 MGP_CASTEiJ_G0031187.1 mouse_genomes_project 7 36203532 36205516 + MGP_CASTEiJ_P0083646 protein_coding protein_coding MGP_CASTEiJ_T0017580.1 MGP_CASTEiJ_G0014971.1 mouse_genomes_project 7 3609442 3620027 - Gm44015 processed_transcript lincRNA MGP_CASTEiJ_T0017581.1 MGP_CASTEiJ_G0014971.1 mouse_genomes_project 7 3609480 3616030 - Gm44015 processed_transcript retained_intron MGP_CASTEiJ_T0087391.1 MGP_CASTEiJ_G0032165.1 mouse_genomes_project 7 133879465 134003534 - MGP_CASTEiJ_P0087391 Ebf3 protein_coding protein_coding MGP_CASTEiJ_T0087392.1 MGP_CASTEiJ_G0032165.1 mouse_genomes_project 7 133879465 134003534 - MGP_CASTEiJ_P0087392 Ebf3 protein_coding protein_coding MGP_CASTEiJ_T0087393.1 MGP_CASTEiJ_G0032165.1 mouse_genomes_project 7 133879465 134003534 - MGP_CASTEiJ_P0087393 Ebf3 protein_coding protein_coding MGP_CASTEiJ_T0087394.1 MGP_CASTEiJ_G0032165.1 mouse_genomes_project 7 133880484 134003503 - MGP_CASTEiJ_P0087394 Ebf3 protein_coding protein_coding MGP_CASTEiJ_T0087395.1 MGP_CASTEiJ_G0032165.1 mouse_genomes_project 7 133984189 134003021 - MGP_CASTEiJ_P0087395 Ebf3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082169.1 MGP_CASTEiJ_G0030826.1 mouse_genomes_project 7 14267162 14317428 + MGP_CASTEiJ_P0082169 protein_coding unknown_likely_coding MGP_CASTEiJ_T0082170.1 MGP_CASTEiJ_G0030826.1 mouse_genomes_project 7 14307612 14317422 + MGP_CASTEiJ_P0082170 protein_coding protein_coding MGP_CASTEiJ_T0081595.1 MGP_CASTEiJ_G0030627.1 mouse_genomes_project 7 1696462 1703403 - MGP_CASTEiJ_P0081595 Il11 protein_coding protein_coding MGP_CASTEiJ_T0081596.1 MGP_CASTEiJ_G0030627.1 mouse_genomes_project 7 1697303 1708127 - MGP_CASTEiJ_P0081596 Il11 protein_coding protein_coding MGP_CASTEiJ_T0085722.1 MGP_CASTEiJ_G0031768.1 mouse_genomes_project 7 100381472 100413781 + MGP_CASTEiJ_P0085722 protein_coding protein_coding MGP_CASTEiJ_T0086064.1 MGP_CASTEiJ_G0031897.1 mouse_genomes_project 7 107819396 108063923 + MGP_CASTEiJ_P0086064 Tead1 protein_coding protein_coding MGP_CASTEiJ_T0086065.1 MGP_CASTEiJ_G0031897.1 mouse_genomes_project 7 107819433 108056663 + MGP_CASTEiJ_P0086065 Tead1 protein_coding protein_coding MGP_CASTEiJ_T0086066.1 MGP_CASTEiJ_G0031897.1 mouse_genomes_project 7 107819586 107997731 + Tead1 protein_coding retained_intron MGP_CASTEiJ_T0086067.1 MGP_CASTEiJ_G0031897.1 mouse_genomes_project 7 107889136 108055334 + MGP_CASTEiJ_P0086067 Tead1 protein_coding protein_coding MGP_CASTEiJ_T0086068.1 MGP_CASTEiJ_G0031897.1 mouse_genomes_project 7 107901400 108055334 + MGP_CASTEiJ_P0086068 Tead1 protein_coding protein_coding MGP_CASTEiJ_T0086069.1 MGP_CASTEiJ_G0031897.1 mouse_genomes_project 7 107907554 107960361 + Tead1 protein_coding processed_transcript MGP_CASTEiJ_T0086070.1 MGP_CASTEiJ_G0031897.1 mouse_genomes_project 7 107907605 108055334 + MGP_CASTEiJ_P0086070 Tead1 protein_coding protein_coding MGP_CASTEiJ_T0086071.1 MGP_CASTEiJ_G0031897.1 mouse_genomes_project 7 107907650 108055334 + MGP_CASTEiJ_P0086071 Tead1 protein_coding protein_coding MGP_CASTEiJ_T0086072.1 MGP_CASTEiJ_G0031897.1 mouse_genomes_project 7 107907650 108055334 + MGP_CASTEiJ_P0086072 Tead1 protein_coding protein_coding MGP_CASTEiJ_T0086073.1 MGP_CASTEiJ_G0031897.1 mouse_genomes_project 7 107907650 108055334 + MGP_CASTEiJ_P0086073 Tead1 protein_coding protein_coding MGP_CASTEiJ_T0086074.1 MGP_CASTEiJ_G0031897.1 mouse_genomes_project 7 107907703 108017060 + MGP_CASTEiJ_P0086074 Tead1 protein_coding protein_coding MGP_CASTEiJ_T0086075.1 MGP_CASTEiJ_G0031897.1 mouse_genomes_project 7 107907713 107997710 + Tead1 protein_coding retained_intron MGP_CASTEiJ_T0087957.1 MGP_CASTEiJ_G0032293.1 mouse_genomes_project 7 140569428 140572129 - MGP_CASTEiJ_P0087957 Cdkn1c protein_coding protein_coding MGP_CASTEiJ_T0087958.1 MGP_CASTEiJ_G0032293.1 mouse_genomes_project 7 140569428 140572129 - MGP_CASTEiJ_P0087958 Cdkn1c protein_coding protein_coding MGP_CASTEiJ_T0087535.1 MGP_CASTEiJ_G0032206.1 mouse_genomes_project 7 137396636 137397688 + MGP_CASTEiJ_P0087535 Olfr533 protein_coding protein_coding MGP_CASTEiJ_T0002161.1 MGP_CASTEiJ_G0002081.1 mouse_genomes_project 7 47964774 47966192 + TEC TEC MGP_CASTEiJ_T0102554.1 MGP_CASTEiJ_G0039278.1 mouse_genomes_project 7 78690156 78690541 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0087627.1 MGP_CASTEiJ_G0032240.1 mouse_genomes_project 7 138127992 138140593 - MGP_CASTEiJ_P0087627 Rnh1 protein_coding protein_coding MGP_CASTEiJ_T0087628.1 MGP_CASTEiJ_G0032240.1 mouse_genomes_project 7 138127992 138136650 - MGP_CASTEiJ_P0087628 Rnh1 protein_coding protein_coding MGP_CASTEiJ_T0087643.1 MGP_CASTEiJ_G0032244.1 mouse_genomes_project 7 138191277 138194079 + MGP_CASTEiJ_P0087643 Rassf7 protein_coding protein_coding MGP_CASTEiJ_T0087644.1 MGP_CASTEiJ_G0032244.1 mouse_genomes_project 7 138191292 138193418 + Rassf7 protein_coding processed_transcript MGP_CASTEiJ_T0087645.1 MGP_CASTEiJ_G0032244.1 mouse_genomes_project 7 138191316 138192931 + Rassf7 protein_coding processed_transcript MGP_CASTEiJ_T0087646.1 MGP_CASTEiJ_G0032244.1 mouse_genomes_project 7 138191395 138192896 + MGP_CASTEiJ_P0087646 Rassf7 protein_coding protein_coding MGP_CASTEiJ_T0087647.1 MGP_CASTEiJ_G0032244.1 mouse_genomes_project 7 138191619 138192890 + MGP_CASTEiJ_P0087647 Rassf7 protein_coding protein_coding MGP_CASTEiJ_T0087648.1 MGP_CASTEiJ_G0032244.1 mouse_genomes_project 7 138192051 138193023 + MGP_CASTEiJ_P0087648 Rassf7 protein_coding protein_coding MGP_CASTEiJ_T0087649.1 MGP_CASTEiJ_G0032244.1 mouse_genomes_project 7 138192116 138193131 + MGP_CASTEiJ_P0087649 Rassf7 protein_coding protein_coding MGP_CASTEiJ_T0083208.1 MGP_CASTEiJ_G0031087.1 mouse_genomes_project 7 23589032 23606865 - MGP_CASTEiJ_P0083208 Mag protein_coding protein_coding MGP_CASTEiJ_T0083209.1 MGP_CASTEiJ_G0031087.1 mouse_genomes_project 7 23589039 23606361 - MGP_CASTEiJ_P0083209 Mag protein_coding protein_coding MGP_CASTEiJ_T0083210.1 MGP_CASTEiJ_G0031087.1 mouse_genomes_project 7 23589387 23606342 - MGP_CASTEiJ_P0083210 Mag protein_coding protein_coding MGP_CASTEiJ_T0083211.1 MGP_CASTEiJ_G0031087.1 mouse_genomes_project 7 23589442 23606342 - MGP_CASTEiJ_P0083211 Mag protein_coding protein_coding MGP_CASTEiJ_T0083212.1 MGP_CASTEiJ_G0031087.1 mouse_genomes_project 7 23598468 23606906 - Mag protein_coding retained_intron MGP_CASTEiJ_T0083213.1 MGP_CASTEiJ_G0031087.1 mouse_genomes_project 7 23600136 23606898 - MGP_CASTEiJ_P0083213 Mag protein_coding protein_coding MGP_CASTEiJ_T0083214.1 MGP_CASTEiJ_G0031087.1 mouse_genomes_project 7 23602569 23606857 - MGP_CASTEiJ_P0083214 Mag protein_coding protein_coding MGP_CASTEiJ_T0083868.1 MGP_CASTEiJ_G0031245.1 mouse_genomes_project 7 37711008 37730143 + MGP_CASTEiJ_P0083868 Tead2 protein_coding protein_coding MGP_CASTEiJ_T0083869.1 MGP_CASTEiJ_G0031245.1 mouse_genomes_project 7 37711046 37716287 + Tead2 protein_coding retained_intron MGP_CASTEiJ_T0083870.1 MGP_CASTEiJ_G0031245.1 mouse_genomes_project 7 37711065 37713464 + Tead2 protein_coding retained_intron MGP_CASTEiJ_T0083871.1 MGP_CASTEiJ_G0031245.1 mouse_genomes_project 7 37711078 37721137 + MGP_CASTEiJ_P0083871 Tead2 protein_coding protein_coding MGP_CASTEiJ_T0083872.1 MGP_CASTEiJ_G0031245.1 mouse_genomes_project 7 37711107 37730143 + MGP_CASTEiJ_P0083872 Tead2 protein_coding protein_coding MGP_CASTEiJ_T0083873.1 MGP_CASTEiJ_G0031245.1 mouse_genomes_project 7 37711935 37714424 + MGP_CASTEiJ_P0083873 Tead2 protein_coding protein_coding MGP_CASTEiJ_T0083874.1 MGP_CASTEiJ_G0031245.1 mouse_genomes_project 7 37712472 37716340 + Tead2 protein_coding retained_intron MGP_CASTEiJ_T0083875.1 MGP_CASTEiJ_G0031245.1 mouse_genomes_project 7 37712472 37730156 + MGP_CASTEiJ_P0083875 Tead2 protein_coding protein_coding MGP_CASTEiJ_T0083876.1 MGP_CASTEiJ_G0031245.1 mouse_genomes_project 7 37713297 37719120 + Tead2 protein_coding processed_transcript MGP_CASTEiJ_T0083877.1 MGP_CASTEiJ_G0031245.1 mouse_genomes_project 7 37715272 37716070 + Tead2 protein_coding retained_intron MGP_CASTEiJ_T0083878.1 MGP_CASTEiJ_G0031245.1 mouse_genomes_project 7 37715810 37716563 + Tead2 protein_coding processed_transcript MGP_CASTEiJ_T0083879.1 MGP_CASTEiJ_G0031245.1 mouse_genomes_project 7 37728670 37729609 + Tead2 protein_coding processed_transcript MGP_CASTEiJ_T0084695.1 MGP_CASTEiJ_G0031426.1 mouse_genomes_project 7 72999486 73006433 - MGP_CASTEiJ_P0084695 Pex11a protein_coding protein_coding MGP_CASTEiJ_T0084696.1 MGP_CASTEiJ_G0031426.1 mouse_genomes_project 7 73000616 73006484 - Pex11a protein_coding processed_transcript MGP_CASTEiJ_T0084697.1 MGP_CASTEiJ_G0031426.1 mouse_genomes_project 7 73000784 73002254 - Pex11a protein_coding retained_intron MGP_CASTEiJ_T0084698.1 MGP_CASTEiJ_G0031426.1 mouse_genomes_project 7 73001306 73003894 - Pex11a protein_coding retained_intron MGP_CASTEiJ_T0085174.1 MGP_CASTEiJ_G0031555.1 mouse_genomes_project 7 91993911 91996999 + Rsf1 protein_coding retained_intron MGP_CASTEiJ_T0085175.1 MGP_CASTEiJ_G0031555.1 mouse_genomes_project 7 91993919 92112060 + Rsf1 protein_coding retained_intron MGP_CASTEiJ_T0085176.1 MGP_CASTEiJ_G0031555.1 mouse_genomes_project 7 91993919 92118471 + MGP_CASTEiJ_P0085176 Rsf1 protein_coding protein_coding MGP_CASTEiJ_T0085177.1 MGP_CASTEiJ_G0031555.1 mouse_genomes_project 7 91993929 92063190 + MGP_CASTEiJ_P0085177 Rsf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085178.1 MGP_CASTEiJ_G0031555.1 mouse_genomes_project 7 92081962 92085619 + Rsf1 protein_coding retained_intron MGP_CASTEiJ_T0085179.1 MGP_CASTEiJ_G0031555.1 mouse_genomes_project 7 92087256 92112248 + MGP_CASTEiJ_P0085179 Rsf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085180.1 MGP_CASTEiJ_G0031555.1 mouse_genomes_project 7 92094164 92100996 + Rsf1 protein_coding retained_intron MGP_CASTEiJ_T0085181.1 MGP_CASTEiJ_G0031555.1 mouse_genomes_project 7 92094519 92106405 + MGP_CASTEiJ_P0085181 Rsf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0081734.1 MGP_CASTEiJ_G0030694.1 mouse_genomes_project 7 6811308 6812229 - MGP_CASTEiJ_P0081734 Vmn1r72 protein_coding protein_coding MGP_CASTEiJ_T0008769.1 MGP_CASTEiJ_G0007077.1 mouse_genomes_project 7 111865300 111867400 + Gm45151 lincRNA lincRNA MGP_CASTEiJ_T0086095.1 MGP_CASTEiJ_G0031903.1 mouse_genomes_project 7 108913786 108914272 - MGP_CASTEiJ_P0086095 protein_coding protein_coding MGP_CASTEiJ_T0087700.1 MGP_CASTEiJ_G0032254.1 mouse_genomes_project 7 138401738 138408347 - Pddc1 protein_coding retained_intron MGP_CASTEiJ_T0087701.1 MGP_CASTEiJ_G0032254.1 mouse_genomes_project 7 138401792 138403589 - Pddc1 protein_coding retained_intron MGP_CASTEiJ_T0087702.1 MGP_CASTEiJ_G0032254.1 mouse_genomes_project 7 138401792 138408393 - MGP_CASTEiJ_P0087702 Pddc1 protein_coding protein_coding MGP_CASTEiJ_T0087703.1 MGP_CASTEiJ_G0032254.1 mouse_genomes_project 7 138401794 138408335 - Pddc1 protein_coding retained_intron MGP_CASTEiJ_T0087704.1 MGP_CASTEiJ_G0032254.1 mouse_genomes_project 7 138405101 138408322 - Pddc1 protein_coding retained_intron MGP_CASTEiJ_T0087705.1 MGP_CASTEiJ_G0032254.1 mouse_genomes_project 7 138405809 138408333 - Pddc1 protein_coding retained_intron MGP_CASTEiJ_T0082303.1 MGP_CASTEiJ_G0030872.1 mouse_genomes_project 7 16538666 16556647 + MGP_CASTEiJ_P0082303 Kcnn4 protein_coding protein_coding MGP_CASTEiJ_T0082304.1 MGP_CASTEiJ_G0030872.1 mouse_genomes_project 7 16538702 16556643 + MGP_CASTEiJ_P0082304 Kcnn4 protein_coding protein_coding MGP_CASTEiJ_T0082305.1 MGP_CASTEiJ_G0030872.1 mouse_genomes_project 7 16538741 16556201 + MGP_CASTEiJ_P0082305 Kcnn4 protein_coding protein_coding MGP_CASTEiJ_T0082306.1 MGP_CASTEiJ_G0030872.1 mouse_genomes_project 7 16553819 16556231 + Kcnn4 protein_coding retained_intron MGP_CASTEiJ_T0082307.1 MGP_CASTEiJ_G0030872.1 mouse_genomes_project 7 16554498 16558155 + Kcnn4 protein_coding retained_intron MGP_CASTEiJ_T0085901.1 MGP_CASTEiJ_G0031853.1 mouse_genomes_project 7 103586651 103587596 + MGP_CASTEiJ_P0085901 Olfr510 protein_coding protein_coding MGP_CASTEiJ_T0083053.1 MGP_CASTEiJ_G0031051.1 mouse_genomes_project 7 22959693 22962190 - MGP_CASTEiJ_P0083053 Sdhaf1 protein_coding protein_coding MGP_CASTEiJ_T0005177.1 MGP_CASTEiJ_G0004399.1 mouse_genomes_project 7 140311751 140398676 - Kcnq1ot1 antisense antisense MGP_CASTEiJ_T0008817.1 MGP_CASTEiJ_G0007112.1 mouse_genomes_project 7 130740181 130820937 - Gm4593 lincRNA lincRNA MGP_CASTEiJ_T0008818.1 MGP_CASTEiJ_G0007112.1 mouse_genomes_project 7 130820143 130824550 - Gm4593 lincRNA lincRNA MGP_CASTEiJ_T0102545.1 MGP_CASTEiJ_G0039269.1 mouse_genomes_project 7 41175623 41176608 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0086371.1 MGP_CASTEiJ_G0031967.1 mouse_genomes_project 7 116645623 116735195 + MGP_CASTEiJ_P0086371 Otoa protein_coding protein_coding MGP_CASTEiJ_T0086372.1 MGP_CASTEiJ_G0031967.1 mouse_genomes_project 7 116645709 116668339 + MGP_CASTEiJ_P0086372 Otoa protein_coding protein_coding MGP_CASTEiJ_T0086373.1 MGP_CASTEiJ_G0031967.1 mouse_genomes_project 7 116645725 116654136 + MGP_CASTEiJ_P0086373 Otoa protein_coding protein_coding MGP_CASTEiJ_T0086374.1 MGP_CASTEiJ_G0031967.1 mouse_genomes_project 7 116645725 116654154 + MGP_CASTEiJ_P0086374 Otoa protein_coding protein_coding MGP_CASTEiJ_T0086375.1 MGP_CASTEiJ_G0031967.1 mouse_genomes_project 7 116687316 116731902 + Otoa protein_coding retained_intron MGP_CASTEiJ_T0086376.1 MGP_CASTEiJ_G0031967.1 mouse_genomes_project 7 116687321 116735189 + Otoa protein_coding processed_transcript MGP_CASTEiJ_T0005027.1 MGP_CASTEiJ_G0004293.1 mouse_genomes_project 7 17503102 17504665 + 4933430L12Rik antisense antisense MGP_CASTEiJ_T0102524.1 MGP_CASTEiJ_G0039248.1 mouse_genomes_project 7 36324099 36326344 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0085894.1 MGP_CASTEiJ_G0031846.1 mouse_genomes_project 7 103389324 103390377 + MGP_CASTEiJ_P0085894 protein_coding protein_coding MGP_CASTEiJ_T0101836.1 MGP_CASTEiJ_G0038590.1 mouse_genomes_project 7 122445297 122459336 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0102530.1 MGP_CASTEiJ_G0039254.1 mouse_genomes_project 7 40217718 40651513 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099009.1 MGP_CASTEiJ_G0035929.1 mouse_genomes_project 7 111585739 111587074 - Gm44867 sense_intronic sense_intronic MGP_CASTEiJ_T0099010.1 MGP_CASTEiJ_G0035929.1 mouse_genomes_project 7 111585739 111587216 - Gm44867 sense_intronic sense_intronic MGP_CASTEiJ_T0085216.1 MGP_CASTEiJ_G0031564.1 mouse_genomes_project 7 92662096 92752630 - MGP_CASTEiJ_P0085216 Acer3 protein_coding protein_coding MGP_CASTEiJ_T0085217.1 MGP_CASTEiJ_G0031564.1 mouse_genomes_project 7 92667198 92752708 - MGP_CASTEiJ_P0085217 Acer3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085218.1 MGP_CASTEiJ_G0031564.1 mouse_genomes_project 7 92673690 92677635 - Acer3 protein_coding retained_intron MGP_CASTEiJ_T0085219.1 MGP_CASTEiJ_G0031564.1 mouse_genomes_project 7 92699086 92752686 - MGP_CASTEiJ_P0085219 Acer3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0015181.1 MGP_CASTEiJ_G0013344.1 mouse_genomes_project 7 25163534 25164235 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0087845.1 MGP_CASTEiJ_G0032278.1 mouse_genomes_project 7 139529641 139532287 + MGP_CASTEiJ_P0087845 Tnni2 protein_coding protein_coding MGP_CASTEiJ_T0087846.1 MGP_CASTEiJ_G0032278.1 mouse_genomes_project 7 139529649 139531913 + MGP_CASTEiJ_P0087846 Tnni2 protein_coding protein_coding MGP_CASTEiJ_T0087847.1 MGP_CASTEiJ_G0032278.1 mouse_genomes_project 7 139530163 139532245 + MGP_CASTEiJ_P0087847 Tnni2 protein_coding protein_coding MGP_CASTEiJ_T0087848.1 MGP_CASTEiJ_G0032278.1 mouse_genomes_project 7 139530743 139532285 + Tnni2 protein_coding retained_intron MGP_CASTEiJ_T0087849.1 MGP_CASTEiJ_G0032278.1 mouse_genomes_project 7 139530815 139531736 + Tnni2 protein_coding retained_intron MGP_CASTEiJ_T0087850.1 MGP_CASTEiJ_G0032278.1 mouse_genomes_project 7 139531006 139532282 + MGP_CASTEiJ_P0087850 Tnni2 protein_coding protein_coding MGP_CASTEiJ_T0085059.1 MGP_CASTEiJ_G0031531.1 mouse_genomes_project 7 84349292 84392750 - MGP_CASTEiJ_P0085059 Ccdc83 protein_coding protein_coding MGP_CASTEiJ_T0085060.1 MGP_CASTEiJ_G0031531.1 mouse_genomes_project 7 84360878 84392750 - MGP_CASTEiJ_P0085060 Ccdc83 protein_coding protein_coding MGP_CASTEiJ_T0085061.1 MGP_CASTEiJ_G0031531.1 mouse_genomes_project 7 84362231 84392750 - MGP_CASTEiJ_P0085061 Ccdc83 protein_coding protein_coding MGP_CASTEiJ_T0085022.1 MGP_CASTEiJ_G0031518.1 mouse_genomes_project 7 81661849 82237767 + MGP_CASTEiJ_P0085022 Grm5 protein_coding protein_coding MGP_CASTEiJ_T0085023.1 MGP_CASTEiJ_G0031518.1 mouse_genomes_project 7 81679217 82233575 + MGP_CASTEiJ_P0085023 Grm5 protein_coding protein_coding MGP_CASTEiJ_T0085024.1 MGP_CASTEiJ_G0031518.1 mouse_genomes_project 7 81889368 81897118 + Grm5 protein_coding processed_transcript MGP_CASTEiJ_T0015201.1 MGP_CASTEiJ_G0013364.1 mouse_genomes_project 7 34696802 34697056 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0085025.1 MGP_CASTEiJ_G0031519.1 mouse_genomes_project 7 82233085 82422333 + MGP_CASTEiJ_P0085025 Ctsc protein_coding unknown_likely_coding MGP_CASTEiJ_T0085026.1 MGP_CASTEiJ_G0031519.1 mouse_genomes_project 7 82387608 82422907 + MGP_CASTEiJ_P0085026 Ctsc protein_coding protein_coding MGP_CASTEiJ_T0085027.1 MGP_CASTEiJ_G0031519.1 mouse_genomes_project 7 82387657 82420039 + MGP_CASTEiJ_P0085027 Ctsc protein_coding protein_coding MGP_CASTEiJ_T0085028.1 MGP_CASTEiJ_G0031519.1 mouse_genomes_project 7 82387661 82392830 + Ctsc protein_coding retained_intron MGP_CASTEiJ_T0085029.1 MGP_CASTEiJ_G0031519.1 mouse_genomes_project 7 82387661 82402483 + Ctsc protein_coding retained_intron MGP_CASTEiJ_T0085030.1 MGP_CASTEiJ_G0031519.1 mouse_genomes_project 7 82407914 82414331 + Ctsc protein_coding retained_intron MGP_CASTEiJ_T0081764.1 MGP_CASTEiJ_G0030712.1 mouse_genomes_project 7 8004649 8016022 + Zfp128 protein_coding retained_intron MGP_CASTEiJ_T0081765.1 MGP_CASTEiJ_G0030712.1 mouse_genomes_project 7 8004649 8017582 + MGP_CASTEiJ_P0081765 Zfp128 protein_coding protein_coding MGP_CASTEiJ_T0085321.1 MGP_CASTEiJ_G0031593.1 mouse_genomes_project 7 94874407 94911559 + MGP_CASTEiJ_P0085321 P4ha3 protein_coding protein_coding MGP_CASTEiJ_T0085322.1 MGP_CASTEiJ_G0031593.1 mouse_genomes_project 7 94874407 94911559 + MGP_CASTEiJ_P0085322 P4ha3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0085323.1 MGP_CASTEiJ_G0031593.1 mouse_genomes_project 7 94874429 94889185 + P4ha3 protein_coding retained_intron MGP_CASTEiJ_T0085324.1 MGP_CASTEiJ_G0031593.1 mouse_genomes_project 7 94884457 94911558 + MGP_CASTEiJ_P0085324 P4ha3 protein_coding protein_coding MGP_CASTEiJ_T0081636.1 MGP_CASTEiJ_G0030642.1 mouse_genomes_project 7 1966360 1969346 + MGP_CASTEiJ_P0081636 protein_coding protein_coding MGP_CASTEiJ_T0087089.1 MGP_CASTEiJ_G0032100.1 mouse_genomes_project 7 124043245 124046527 + MGP_CASTEiJ_P0087089 protein_coding protein_coding MGP_CASTEiJ_T0002162.1 MGP_CASTEiJ_G0002082.1 mouse_genomes_project 7 48145409 48149027 + TEC TEC MGP_CASTEiJ_T0026697.1 MGP_CASTEiJ_G0017139.1 mouse_genomes_project 10 130162162 130167581 + MGP_CASTEiJ_P0026697 Ddit3 protein_coding protein_coding MGP_CASTEiJ_T0026698.1 MGP_CASTEiJ_G0017139.1 mouse_genomes_project 10 130162181 130167358 + MGP_CASTEiJ_P0026698 Ddit3 protein_coding protein_coding MGP_CASTEiJ_T0026699.1 MGP_CASTEiJ_G0017139.1 mouse_genomes_project 10 130162182 130165872 + Ddit3 protein_coding retained_intron MGP_CASTEiJ_T0026425.1 MGP_CASTEiJ_G0017051.1 mouse_genomes_project 10 113636969 113649894 - MGP_CASTEiJ_P0026425 Glipr1 protein_coding protein_coding MGP_CASTEiJ_T0026426.1 MGP_CASTEiJ_G0017051.1 mouse_genomes_project 10 113636973 113655801 - MGP_CASTEiJ_P0026426 Glipr1 protein_coding protein_coding MGP_CASTEiJ_T0026427.1 MGP_CASTEiJ_G0017051.1 mouse_genomes_project 10 113636978 113646127 - MGP_CASTEiJ_P0026427 Glipr1 protein_coding protein_coding MGP_CASTEiJ_T0026428.1 MGP_CASTEiJ_G0017051.1 mouse_genomes_project 10 113646099 113655811 - Glipr1 protein_coding processed_transcript MGP_CASTEiJ_T0026429.1 MGP_CASTEiJ_G0017051.1 mouse_genomes_project 10 113646199 113648445 - Glipr1 protein_coding processed_transcript MGP_CASTEiJ_T0098311.1 MGP_CASTEiJ_G0035242.1 mouse_genomes_project 10 42829609 42830157 + pseudogene pseudogene MGP_CASTEiJ_T0003003.1 MGP_CASTEiJ_G0002804.1 mouse_genomes_project 10 131415013 131418729 - Gm17201 antisense antisense MGP_CASTEiJ_T0016396.1 MGP_CASTEiJ_G0014453.1 mouse_genomes_project 10 87042464 87043442 - Gm15344 processed_transcript processed_transcript MGP_CASTEiJ_T0026974.1 MGP_CASTEiJ_G0017258.1 mouse_genomes_project 10 133218226 133219287 + MGP_CASTEiJ_P0026974 Olfr820 protein_coding protein_coding MGP_CASTEiJ_T0026381.1 MGP_CASTEiJ_G0017038.1 mouse_genomes_project 10 109128010 109297004 - MGP_CASTEiJ_P0026381 Otogl protein_coding protein_coding MGP_CASTEiJ_T0026071.1 MGP_CASTEiJ_G0016956.1 mouse_genomes_project 10 88787156 88828205 + MGP_CASTEiJ_P0026071 Gnptab protein_coding protein_coding MGP_CASTEiJ_T0026072.1 MGP_CASTEiJ_G0016956.1 mouse_genomes_project 10 88787248 88828162 + MGP_CASTEiJ_P0026072 Gnptab protein_coding protein_coding MGP_CASTEiJ_T0026073.1 MGP_CASTEiJ_G0016956.1 mouse_genomes_project 10 88787248 88860755 + MGP_CASTEiJ_P0026073 Gnptab protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026074.1 MGP_CASTEiJ_G0016956.1 mouse_genomes_project 10 88787250 88860765 + MGP_CASTEiJ_P0026074 Gnptab protein_coding protein_coding MGP_CASTEiJ_T0026075.1 MGP_CASTEiJ_G0016956.1 mouse_genomes_project 10 88787306 88853583 + MGP_CASTEiJ_P0026075 Gnptab protein_coding unknown_likely_coding MGP_CASTEiJ_T0026076.1 MGP_CASTEiJ_G0016956.1 mouse_genomes_project 10 88842450 88846181 + Gnptab protein_coding processed_transcript MGP_CASTEiJ_T0026077.1 MGP_CASTEiJ_G0016956.1 mouse_genomes_project 10 88846253 88853891 + Gnptab protein_coding processed_transcript MGP_CASTEiJ_T0026078.1 MGP_CASTEiJ_G0016956.1 mouse_genomes_project 10 88848879 88849565 + Gnptab protein_coding retained_intron MGP_CASTEiJ_T0012101.1 MGP_CASTEiJ_G0010264.1 mouse_genomes_project 10 119732748 119734406 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024167.1 MGP_CASTEiJ_G0016447.1 mouse_genomes_project 10 27024133 27037475 - MGP_CASTEiJ_P0024167 2310057J18Rik protein_coding protein_coding MGP_CASTEiJ_T0024168.1 MGP_CASTEiJ_G0016447.1 mouse_genomes_project 10 27024209 27038383 - MGP_CASTEiJ_P0024168 2310057J18Rik protein_coding protein_coding MGP_CASTEiJ_T0024169.1 MGP_CASTEiJ_G0016447.1 mouse_genomes_project 10 27024211 27026031 - 2310057J18Rik protein_coding retained_intron MGP_CASTEiJ_T0024170.1 MGP_CASTEiJ_G0016447.1 mouse_genomes_project 10 27024211 27038393 - MGP_CASTEiJ_P0024170 2310057J18Rik protein_coding protein_coding MGP_CASTEiJ_T0024686.1 MGP_CASTEiJ_G0016616.1 mouse_genomes_project 10 60637637 60666296 + MGP_CASTEiJ_P0024686 Ppa1 protein_coding protein_coding MGP_CASTEiJ_T0024687.1 MGP_CASTEiJ_G0016616.1 mouse_genomes_project 10 60637706 60643260 + Ppa1 protein_coding retained_intron MGP_CASTEiJ_T0024688.1 MGP_CASTEiJ_G0016616.1 mouse_genomes_project 10 60654836 60657554 + Ppa1 protein_coding processed_transcript MGP_CASTEiJ_T0024689.1 MGP_CASTEiJ_G0016616.1 mouse_genomes_project 10 60655841 60657735 + Ppa1 protein_coding retained_intron MGP_CASTEiJ_T0024312.1 MGP_CASTEiJ_G0016507.1 mouse_genomes_project 10 39483995 39539290 + MGP_CASTEiJ_P0024312 Wasf1 protein_coding protein_coding MGP_CASTEiJ_T0024313.1 MGP_CASTEiJ_G0016507.1 mouse_genomes_project 10 39484347 39539291 + MGP_CASTEiJ_P0024313 Wasf1 protein_coding protein_coding MGP_CASTEiJ_T0026494.1 MGP_CASTEiJ_G0017074.1 mouse_genomes_project 10 118968185 119017634 - MGP_CASTEiJ_P0026494 Rab3ip protein_coding unknown_likely_coding MGP_CASTEiJ_T0026495.1 MGP_CASTEiJ_G0017074.1 mouse_genomes_project 10 118968803 119017598 - MGP_CASTEiJ_P0026495 Rab3ip protein_coding protein_coding MGP_CASTEiJ_T0025916.1 MGP_CASTEiJ_G0016912.1 mouse_genomes_project 10 82912472 82927891 - MGP_CASTEiJ_P0025916 Nfyb protein_coding protein_coding MGP_CASTEiJ_T0025917.1 MGP_CASTEiJ_G0016912.1 mouse_genomes_project 10 82913064 82927848 - Nfyb protein_coding retained_intron MGP_CASTEiJ_T0025918.1 MGP_CASTEiJ_G0016912.1 mouse_genomes_project 10 82914258 82915444 - Nfyb protein_coding retained_intron MGP_CASTEiJ_T0025919.1 MGP_CASTEiJ_G0016912.1 mouse_genomes_project 10 82914950 82916312 - Nfyb protein_coding retained_intron MGP_CASTEiJ_T0025920.1 MGP_CASTEiJ_G0016912.1 mouse_genomes_project 10 82916177 82927405 - Nfyb protein_coding processed_transcript MGP_CASTEiJ_T0025921.1 MGP_CASTEiJ_G0016912.1 mouse_genomes_project 10 82916279 82927388 - MGP_CASTEiJ_P0025921 Nfyb protein_coding protein_coding MGP_CASTEiJ_T0025922.1 MGP_CASTEiJ_G0016912.1 mouse_genomes_project 10 82918842 82921078 - Nfyb protein_coding retained_intron MGP_CASTEiJ_T0024207.1 MGP_CASTEiJ_G0016465.1 mouse_genomes_project 10 31748330 31846852 - MGP_CASTEiJ_P0024207 Clvs2 protein_coding protein_coding MGP_CASTEiJ_T0006000.1 MGP_CASTEiJ_G0005021.1 mouse_genomes_project 10 121674609 121688021 + 1700025F24Rik lincRNA lincRNA MGP_CASTEiJ_T0026973.1 MGP_CASTEiJ_G0017257.1 mouse_genomes_project 10 133180086 133181163 - MGP_CASTEiJ_P0026973 protein_coding protein_coding MGP_CASTEiJ_T0024359.1 MGP_CASTEiJ_G0016519.1 mouse_genomes_project 10 40377550 40467414 - MGP_CASTEiJ_P0024359 Cep57l1 protein_coding protein_coding MGP_CASTEiJ_T0024360.1 MGP_CASTEiJ_G0016519.1 mouse_genomes_project 10 40377550 40467159 - MGP_CASTEiJ_P0024360 Cep57l1 protein_coding protein_coding MGP_CASTEiJ_T0024361.1 MGP_CASTEiJ_G0016519.1 mouse_genomes_project 10 40377552 40467193 - MGP_CASTEiJ_P0024361 Cep57l1 protein_coding protein_coding MGP_CASTEiJ_T0024362.1 MGP_CASTEiJ_G0016519.1 mouse_genomes_project 10 40377555 40467153 - MGP_CASTEiJ_P0024362 Cep57l1 protein_coding protein_coding MGP_CASTEiJ_T0024363.1 MGP_CASTEiJ_G0016519.1 mouse_genomes_project 10 40377555 40467153 - MGP_CASTEiJ_P0024363 Cep57l1 protein_coding protein_coding MGP_CASTEiJ_T0024364.1 MGP_CASTEiJ_G0016519.1 mouse_genomes_project 10 40378556 40467168 - MGP_CASTEiJ_P0024364 Cep57l1 protein_coding protein_coding MGP_CASTEiJ_T0024365.1 MGP_CASTEiJ_G0016519.1 mouse_genomes_project 10 40379792 40381512 - MGP_CASTEiJ_P0024365 Cep57l1 protein_coding protein_coding MGP_CASTEiJ_T0024366.1 MGP_CASTEiJ_G0016519.1 mouse_genomes_project 10 40384174 40387562 - Cep57l1 protein_coding retained_intron MGP_CASTEiJ_T0024367.1 MGP_CASTEiJ_G0016519.1 mouse_genomes_project 10 40387142 40408694 - Cep57l1 protein_coding retained_intron MGP_CASTEiJ_T0024368.1 MGP_CASTEiJ_G0016519.1 mouse_genomes_project 10 40404758 40467158 - Cep57l1 protein_coding retained_intron MGP_CASTEiJ_T0024369.1 MGP_CASTEiJ_G0016519.1 mouse_genomes_project 10 40406795 40467176 - Cep57l1 protein_coding retained_intron MGP_CASTEiJ_T0100386.1 MGP_CASTEiJ_G0037299.1 mouse_genomes_project 10 94651005 94651173 - Gm25962 snoRNA snoRNA MGP_CASTEiJ_T0025332.1 MGP_CASTEiJ_G0016769.1 mouse_genomes_project 10 79108177 79111843 + MGP_CASTEiJ_P0025332 Olfr1352 protein_coding protein_coding MGP_CASTEiJ_T0025333.1 MGP_CASTEiJ_G0016769.1 mouse_genomes_project 10 79108242 79111380 + MGP_CASTEiJ_P0025333 Olfr1352 protein_coding protein_coding MGP_CASTEiJ_T0002970.1 MGP_CASTEiJ_G0002781.1 mouse_genomes_project 10 87192921 87229333 + Gm16268 antisense antisense MGP_CASTEiJ_T0025646.1 MGP_CASTEiJ_G0016847.1 mouse_genomes_project 10 81010741 81054619 + MGP_CASTEiJ_P0025646 Dot1l protein_coding protein_coding MGP_CASTEiJ_T0025647.1 MGP_CASTEiJ_G0016847.1 mouse_genomes_project 10 81010743 81053545 + MGP_CASTEiJ_P0025647 Dot1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025648.1 MGP_CASTEiJ_G0016847.1 mouse_genomes_project 10 81010998 81022256 + Dot1l protein_coding retained_intron MGP_CASTEiJ_T0025649.1 MGP_CASTEiJ_G0016847.1 mouse_genomes_project 10 81034445 81053549 + MGP_CASTEiJ_P0025649 Dot1l protein_coding protein_coding MGP_CASTEiJ_T0025650.1 MGP_CASTEiJ_G0016847.1 mouse_genomes_project 10 81042074 81043332 + Dot1l protein_coding retained_intron MGP_CASTEiJ_T0025651.1 MGP_CASTEiJ_G0016847.1 mouse_genomes_project 10 81048215 81053505 + MGP_CASTEiJ_P0025651 Dot1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025652.1 MGP_CASTEiJ_G0016847.1 mouse_genomes_project 10 81050605 81052976 + MGP_CASTEiJ_P0025652 Dot1l protein_coding protein_coding MGP_CASTEiJ_T0023793.1 MGP_CASTEiJ_G0016338.1 mouse_genomes_project 10 4734613 4768067 - MGP_CASTEiJ_P0023793 Pcmt1 protein_coding protein_coding MGP_CASTEiJ_T0023794.1 MGP_CASTEiJ_G0016338.1 mouse_genomes_project 10 4734613 4767723 - MGP_CASTEiJ_P0023794 Pcmt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023795.1 MGP_CASTEiJ_G0016338.1 mouse_genomes_project 10 4734621 4767762 - MGP_CASTEiJ_P0023795 Pcmt1 protein_coding protein_coding MGP_CASTEiJ_T0023796.1 MGP_CASTEiJ_G0016338.1 mouse_genomes_project 10 4740209 4767720 - MGP_CASTEiJ_P0023796 Pcmt1 protein_coding protein_coding MGP_CASTEiJ_T0023797.1 MGP_CASTEiJ_G0016338.1 mouse_genomes_project 10 4740209 4752506 - MGP_CASTEiJ_P0023797 Pcmt1 protein_coding protein_coding MGP_CASTEiJ_T0023798.1 MGP_CASTEiJ_G0016338.1 mouse_genomes_project 10 4742167 4768067 - Pcmt1 protein_coding retained_intron MGP_CASTEiJ_T0023799.1 MGP_CASTEiJ_G0016338.1 mouse_genomes_project 10 4746828 4787162 - MGP_CASTEiJ_P0023799 Pcmt1 protein_coding protein_coding MGP_CASTEiJ_T0023800.1 MGP_CASTEiJ_G0016338.1 mouse_genomes_project 10 4750949 4754881 - MGP_CASTEiJ_P0023800 Pcmt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023801.1 MGP_CASTEiJ_G0016338.1 mouse_genomes_project 10 4752315 4767723 - Pcmt1 protein_coding retained_intron MGP_CASTEiJ_T0101973.1 MGP_CASTEiJ_G0038698.1 mouse_genomes_project 10 132705488 132705903 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0026445.1 MGP_CASTEiJ_G0017061.1 mouse_genomes_project 10 117199706 117227896 - MGP_CASTEiJ_P0026445 Rab21 protein_coding protein_coding MGP_CASTEiJ_T0026896.1 MGP_CASTEiJ_G0017205.1 mouse_genomes_project 10 131856809 131866645 + MGP_CASTEiJ_P0026896 Mmp19 protein_coding protein_coding MGP_CASTEiJ_T0002930.1 MGP_CASTEiJ_G0002750.1 mouse_genomes_project 10 59834940 59843880 + Gm26947 antisense antisense MGP_CASTEiJ_T0024208.1 MGP_CASTEiJ_G0016466.1 mouse_genomes_project 10 32014790 32028621 - MGP_CASTEiJ_P0024208 Sult3a2 protein_coding protein_coding MGP_CASTEiJ_T0009363.1 MGP_CASTEiJ_G0007551.1 mouse_genomes_project 10 81730430 81730488 - Mir1191b miRNA miRNA MGP_CASTEiJ_T0025885.1 MGP_CASTEiJ_G0016901.1 mouse_genomes_project 10 82042590 82044927 + MGP_CASTEiJ_P0025885 protein_coding protein_coding MGP_CASTEiJ_T0024563.1 MGP_CASTEiJ_G0016583.1 mouse_genomes_project 10 57456816 57461423 - MGP_CASTEiJ_P0024563 Gm17542 protein_coding protein_coding MGP_CASTEiJ_T0026927.1 MGP_CASTEiJ_G0017222.1 mouse_genomes_project 10 132222846 132229277 - MGP_CASTEiJ_P0026927 Olfr770 protein_coding protein_coding MGP_CASTEiJ_T0026928.1 MGP_CASTEiJ_G0017222.1 mouse_genomes_project 10 132222846 132223782 - MGP_CASTEiJ_P0026928 Olfr770 protein_coding protein_coding MGP_CASTEiJ_T0026929.1 MGP_CASTEiJ_G0017222.1 mouse_genomes_project 10 132223392 132230011 - MGP_CASTEiJ_P0026929 Olfr770 protein_coding protein_coding MGP_CASTEiJ_T0026930.1 MGP_CASTEiJ_G0017222.1 mouse_genomes_project 10 132223459 132230015 - MGP_CASTEiJ_P0026930 Olfr770 protein_coding protein_coding MGP_CASTEiJ_T0025675.1 MGP_CASTEiJ_G0016858.1 mouse_genomes_project 10 81171854 81191745 - MGP_CASTEiJ_P0025675 Lmnb2 protein_coding protein_coding MGP_CASTEiJ_T0025676.1 MGP_CASTEiJ_G0016858.1 mouse_genomes_project 10 81173294 81176884 - MGP_CASTEiJ_P0025676 Lmnb2 protein_coding protein_coding MGP_CASTEiJ_T0025677.1 MGP_CASTEiJ_G0016858.1 mouse_genomes_project 10 81173609 81191806 - MGP_CASTEiJ_P0025677 Lmnb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025678.1 MGP_CASTEiJ_G0016858.1 mouse_genomes_project 10 81181815 81191378 - Lmnb2 protein_coding processed_transcript MGP_CASTEiJ_T0023833.1 MGP_CASTEiJ_G0016348.1 mouse_genomes_project 10 6728092 6731215 - MGP_CASTEiJ_P0023833 Gm9930 protein_coding protein_coding MGP_CASTEiJ_T0025030.1 MGP_CASTEiJ_G0016679.1 mouse_genomes_project 10 74804390 74886709 - MGP_CASTEiJ_P0025030 Rsph14 protein_coding protein_coding MGP_CASTEiJ_T0025031.1 MGP_CASTEiJ_G0016679.1 mouse_genomes_project 10 74804390 74886688 - MGP_CASTEiJ_P0025031 Rsph14 protein_coding protein_coding MGP_CASTEiJ_T0025032.1 MGP_CASTEiJ_G0016679.1 mouse_genomes_project 10 74804390 74886676 - MGP_CASTEiJ_P0025032 Rsph14 protein_coding protein_coding MGP_CASTEiJ_T0025033.1 MGP_CASTEiJ_G0016679.1 mouse_genomes_project 10 74808464 74886676 - MGP_CASTEiJ_P0025033 Rsph14 protein_coding protein_coding MGP_CASTEiJ_T0025034.1 MGP_CASTEiJ_G0016679.1 mouse_genomes_project 10 74810478 74886685 - MGP_CASTEiJ_P0025034 Rsph14 protein_coding protein_coding MGP_CASTEiJ_T0025038.1 MGP_CASTEiJ_G0016679.1 mouse_genomes_project 10 74876052 74886651 - MGP_CASTEiJ_P0025038 Rsph14 protein_coding protein_coding MGP_CASTEiJ_T0025039.1 MGP_CASTEiJ_G0016679.1 mouse_genomes_project 10 74878240 74886709 - Rsph14 protein_coding retained_intron MGP_CASTEiJ_T0009356.1 MGP_CASTEiJ_G0007544.1 mouse_genomes_project 10 80597630 80597713 + Gm22721 miRNA miRNA MGP_CASTEiJ_T0026643.1 MGP_CASTEiJ_G0017121.1 mouse_genomes_project 10 129834775 129860041 + MGP_CASTEiJ_P0026643 Avil protein_coding protein_coding MGP_CASTEiJ_T0026644.1 MGP_CASTEiJ_G0017121.1 mouse_genomes_project 10 129834805 129844949 + MGP_CASTEiJ_P0026644 Avil protein_coding protein_coding MGP_CASTEiJ_T0026645.1 MGP_CASTEiJ_G0017121.1 mouse_genomes_project 10 129837073 129845021 + MGP_CASTEiJ_P0026645 Avil protein_coding protein_coding MGP_CASTEiJ_T0026646.1 MGP_CASTEiJ_G0017121.1 mouse_genomes_project 10 129837209 129859825 + MGP_CASTEiJ_P0026646 Avil protein_coding protein_coding MGP_CASTEiJ_T0009359.1 MGP_CASTEiJ_G0007547.1 mouse_genomes_project 10 81391292 81391352 - Mir5615-1 miRNA miRNA MGP_CASTEiJ_T0012090.1 MGP_CASTEiJ_G0010253.1 mouse_genomes_project 10 87365896 87366305 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0025783.1 MGP_CASTEiJ_G0016885.1 mouse_genomes_project 10 81674055 81675846 - MGP_CASTEiJ_P0025783 4930404N11Rik protein_coding protein_coding MGP_CASTEiJ_T0025784.1 MGP_CASTEiJ_G0016885.1 mouse_genomes_project 10 81674912 81675868 - 4930404N11Rik protein_coding retained_intron MGP_CASTEiJ_T0025785.1 MGP_CASTEiJ_G0016885.1 mouse_genomes_project 10 81675013 81676806 - MGP_CASTEiJ_P0025785 4930404N11Rik protein_coding protein_coding MGP_CASTEiJ_T0025786.1 MGP_CASTEiJ_G0016885.1 mouse_genomes_project 10 81675036 81676780 - 4930404N11Rik protein_coding retained_intron MGP_CASTEiJ_T0026936.1 MGP_CASTEiJ_G0017227.1 mouse_genomes_project 10 132351083 132543673 + MGP_CASTEiJ_P0026936 protein_coding protein_coding MGP_CASTEiJ_T0023952.1 MGP_CASTEiJ_G0016374.1 mouse_genomes_project 10 15129403 15131849 + MGP_CASTEiJ_P0023952 Cited2 protein_coding protein_coding MGP_CASTEiJ_T0002946.1 MGP_CASTEiJ_G0002763.1 mouse_genomes_project 10 76361161 76376706 + 1700094J05Rik antisense antisense MGP_CASTEiJ_T0002947.1 MGP_CASTEiJ_G0002763.1 mouse_genomes_project 10 76373797 76374165 + 1700094J05Rik antisense antisense MGP_CASTEiJ_T0012059.1 MGP_CASTEiJ_G0010222.1 mouse_genomes_project 10 41016361 41016838 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024860.1 MGP_CASTEiJ_G0016658.1 mouse_genomes_project 10 67244964 67271425 - MGP_CASTEiJ_P0024860 Zfp365 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024861.1 MGP_CASTEiJ_G0016658.1 mouse_genomes_project 10 67244967 67271622 - MGP_CASTEiJ_P0024861 Zfp365 protein_coding protein_coding MGP_CASTEiJ_T0024862.1 MGP_CASTEiJ_G0016658.1 mouse_genomes_project 10 67245032 67260036 - Zfp365 protein_coding processed_transcript MGP_CASTEiJ_T0024863.1 MGP_CASTEiJ_G0016658.1 mouse_genomes_project 10 67248659 67257703 - Zfp365 protein_coding processed_transcript MGP_CASTEiJ_T0024864.1 MGP_CASTEiJ_G0016658.1 mouse_genomes_project 10 67255394 67271395 - Zfp365 protein_coding retained_intron MGP_CASTEiJ_T0024492.1 MGP_CASTEiJ_G0016559.1 mouse_genomes_project 10 51394557 51418080 + MGP_CASTEiJ_P0024492 Nus1 protein_coding protein_coding MGP_CASTEiJ_T0024493.1 MGP_CASTEiJ_G0016559.1 mouse_genomes_project 10 51394672 51457444 + MGP_CASTEiJ_P0024493 Nus1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024494.1 MGP_CASTEiJ_G0016559.1 mouse_genomes_project 10 51405964 51411250 + MGP_CASTEiJ_P0024494 Nus1 protein_coding protein_coding MGP_CASTEiJ_T0025311.1 MGP_CASTEiJ_G0016755.1 mouse_genomes_project 10 78580345 78582303 + MGP_CASTEiJ_P0025311 Cstb protein_coding protein_coding MGP_CASTEiJ_T0000797.1 MGP_CASTEiJ_G0000737.1 mouse_genomes_project 10 122636746 122639281 + TEC TEC MGP_CASTEiJ_T0024044.1 MGP_CASTEiJ_G0016404.1 mouse_genomes_project 10 19017883 19037283 + MGP_CASTEiJ_P0024044 Aldh8a1 protein_coding protein_coding MGP_CASTEiJ_T0024045.1 MGP_CASTEiJ_G0016404.1 mouse_genomes_project 10 19017892 19026118 + Aldh8a1 protein_coding retained_intron MGP_CASTEiJ_T0024046.1 MGP_CASTEiJ_G0016404.1 mouse_genomes_project 10 19017939 19029522 + MGP_CASTEiJ_P0024046 Aldh8a1 protein_coding protein_coding MGP_CASTEiJ_T0000792.1 MGP_CASTEiJ_G0000732.1 mouse_genomes_project 10 113447180 113447478 + TEC TEC MGP_CASTEiJ_T0023776.1 MGP_CASTEiJ_G0016334.1 mouse_genomes_project 10 4004901 4110619 - MGP_CASTEiJ_P0023776 Ipcef1 protein_coding protein_coding MGP_CASTEiJ_T0023777.1 MGP_CASTEiJ_G0016334.1 mouse_genomes_project 10 4009715 4109947 - MGP_CASTEiJ_P0023777 Ipcef1 protein_coding protein_coding MGP_CASTEiJ_T0023778.1 MGP_CASTEiJ_G0016334.1 mouse_genomes_project 10 4034932 4148773 - MGP_CASTEiJ_P0023778 Ipcef1 protein_coding protein_coding MGP_CASTEiJ_T0023779.1 MGP_CASTEiJ_G0016334.1 mouse_genomes_project 10 4034932 4177751 - MGP_CASTEiJ_P0023779 Ipcef1 protein_coding protein_coding MGP_CASTEiJ_T0023780.1 MGP_CASTEiJ_G0016334.1 mouse_genomes_project 10 4040794 4110557 - Ipcef1 protein_coding processed_transcript MGP_CASTEiJ_T0023781.1 MGP_CASTEiJ_G0016334.1 mouse_genomes_project 10 4040794 4110708 - Ipcef1 protein_coding processed_transcript MGP_CASTEiJ_T0023782.1 MGP_CASTEiJ_G0016334.1 mouse_genomes_project 10 4043044 4148755 - MGP_CASTEiJ_P0023782 Ipcef1 protein_coding protein_coding MGP_CASTEiJ_T0023783.1 MGP_CASTEiJ_G0016334.1 mouse_genomes_project 10 4043124 4110776 - Ipcef1 protein_coding processed_transcript MGP_CASTEiJ_T0023784.1 MGP_CASTEiJ_G0016334.1 mouse_genomes_project 10 4084833 4129787 - MGP_CASTEiJ_P0023784 Ipcef1 protein_coding protein_coding MGP_CASTEiJ_T0002916.1 MGP_CASTEiJ_G0002740.1 mouse_genomes_project 10 38048444 38050421 - Gm16364 antisense antisense MGP_CASTEiJ_T0012106.1 MGP_CASTEiJ_G0010269.1 mouse_genomes_project 10 130889686 130889978 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024561.1 MGP_CASTEiJ_G0016581.1 mouse_genomes_project 10 57341685 57416080 - MGP_CASTEiJ_P0024561 Edar protein_coding protein_coding MGP_CASTEiJ_T0100372.1 MGP_CASTEiJ_G0037285.1 mouse_genomes_project 10 50870035 50870161 + Gm23906 snoRNA snoRNA MGP_CASTEiJ_T0024107.1 MGP_CASTEiJ_G0016433.1 mouse_genomes_project 10 22610317 22677280 - MGP_CASTEiJ_P0024107 Enpp3 protein_coding protein_coding MGP_CASTEiJ_T0024224.1 MGP_CASTEiJ_G0016479.1 mouse_genomes_project 10 32591180 32595056 + MGP_CASTEiJ_P0024224 Tspyl4 protein_coding protein_coding MGP_CASTEiJ_T0023738.1 MGP_CASTEiJ_G0016328.1 mouse_genomes_project 10 2737633 2746037 + MGP_CASTEiJ_P0023738 Vip protein_coding protein_coding MGP_CASTEiJ_T0026764.1 MGP_CASTEiJ_G0017154.1 mouse_genomes_project 10 130618867 130635824 + MGP_CASTEiJ_P0026764 Myo1a protein_coding protein_coding MGP_CASTEiJ_T0026765.1 MGP_CASTEiJ_G0017154.1 mouse_genomes_project 10 130618953 130648564 + MGP_CASTEiJ_P0026765 Myo1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0026225.1 MGP_CASTEiJ_G0016985.1 mouse_genomes_project 10 94303317 94321486 + MGP_CASTEiJ_P0026225 4933408J17Rik protein_coding protein_coding MGP_CASTEiJ_T0009378.1 MGP_CASTEiJ_G0007566.1 mouse_genomes_project 10 105528911 105529019 + Mir6411 miRNA miRNA MGP_CASTEiJ_T0024307.1 MGP_CASTEiJ_G0016503.1 mouse_genomes_project 10 39147850 39186124 + MGP_CASTEiJ_P0024307 Slc22a16 protein_coding protein_coding MGP_CASTEiJ_T0024308.1 MGP_CASTEiJ_G0016503.1 mouse_genomes_project 10 39148127 39186120 + MGP_CASTEiJ_P0024308 Slc22a16 protein_coding protein_coding MGP_CASTEiJ_T0100348.1 MGP_CASTEiJ_G0037261.1 mouse_genomes_project 10 8547820 8548016 - Gm25979 snoRNA snoRNA MGP_CASTEiJ_T0024528.1 MGP_CASTEiJ_G0016573.1 mouse_genomes_project 10 56674923 56786725 + MGP_CASTEiJ_P0024528 Pkib protein_coding protein_coding MGP_CASTEiJ_T0024529.1 MGP_CASTEiJ_G0016573.1 mouse_genomes_project 10 56674993 56789002 + MGP_CASTEiJ_P0024529 Pkib protein_coding protein_coding MGP_CASTEiJ_T0024530.1 MGP_CASTEiJ_G0016573.1 mouse_genomes_project 10 56674998 56754947 + Pkib protein_coding retained_intron MGP_CASTEiJ_T0024531.1 MGP_CASTEiJ_G0016573.1 mouse_genomes_project 10 56675036 56699006 + Pkib protein_coding retained_intron MGP_CASTEiJ_T0024532.1 MGP_CASTEiJ_G0016573.1 mouse_genomes_project 10 56675066 56774732 + MGP_CASTEiJ_P0024532 Pkib protein_coding protein_coding MGP_CASTEiJ_T0024533.1 MGP_CASTEiJ_G0016573.1 mouse_genomes_project 10 56683941 56762273 + Pkib protein_coding processed_transcript MGP_CASTEiJ_T0024534.1 MGP_CASTEiJ_G0016573.1 mouse_genomes_project 10 56688442 56783182 + MGP_CASTEiJ_P0024534 Pkib protein_coding protein_coding MGP_CASTEiJ_T0024535.1 MGP_CASTEiJ_G0016573.1 mouse_genomes_project 10 56688493 56783182 + MGP_CASTEiJ_P0024535 Pkib protein_coding protein_coding MGP_CASTEiJ_T0024536.1 MGP_CASTEiJ_G0016573.1 mouse_genomes_project 10 56694581 56783879 + MGP_CASTEiJ_P0024536 Pkib protein_coding protein_coding MGP_CASTEiJ_T0024537.1 MGP_CASTEiJ_G0016573.1 mouse_genomes_project 10 56694594 56783183 + MGP_CASTEiJ_P0024537 Pkib protein_coding protein_coding MGP_CASTEiJ_T0024538.1 MGP_CASTEiJ_G0016573.1 mouse_genomes_project 10 56774562 56783253 + Pkib protein_coding processed_transcript MGP_CASTEiJ_T0024721.1 MGP_CASTEiJ_G0016625.1 mouse_genomes_project 10 61220754 61276242 - MGP_CASTEiJ_P0024721 Tspan15 protein_coding protein_coding MGP_CASTEiJ_T0025765.1 MGP_CASTEiJ_G0016881.1 mouse_genomes_project 10 81635082 81641541 + MGP_CASTEiJ_P0025765 Tbxa2r protein_coding protein_coding MGP_CASTEiJ_T0026903.1 MGP_CASTEiJ_G0017210.1 mouse_genomes_project 10 131919428 131964735 - MGP_CASTEiJ_P0026903 Gdf11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026904.1 MGP_CASTEiJ_G0017210.1 mouse_genomes_project 10 131952667 131964741 - MGP_CASTEiJ_P0026904 Gdf11 protein_coding protein_coding MGP_CASTEiJ_T0024982.1 MGP_CASTEiJ_G0016677.1 mouse_genomes_project 10 72284522 72305789 + MGP_CASTEiJ_P0024982 Zwint protein_coding protein_coding MGP_CASTEiJ_T0024983.1 MGP_CASTEiJ_G0016677.1 mouse_genomes_project 10 72284572 72300711 + MGP_CASTEiJ_P0024983 Zwint protein_coding protein_coding MGP_CASTEiJ_T0024984.1 MGP_CASTEiJ_G0016677.1 mouse_genomes_project 10 72284573 72300087 + MGP_CASTEiJ_P0024984 Zwint protein_coding protein_coding MGP_CASTEiJ_T0024985.1 MGP_CASTEiJ_G0016677.1 mouse_genomes_project 10 72285120 72286278 + Zwint protein_coding retained_intron MGP_CASTEiJ_T0024986.1 MGP_CASTEiJ_G0016677.1 mouse_genomes_project 10 72285916 72287068 + Zwint protein_coding retained_intron MGP_CASTEiJ_T0024987.1 MGP_CASTEiJ_G0016677.1 mouse_genomes_project 10 72286270 72305149 + Zwint protein_coding processed_transcript MGP_CASTEiJ_T0023982.1 MGP_CASTEiJ_G0016382.1 mouse_genomes_project 10 15993518 16001842 - MGP_CASTEiJ_P0023982 Hebp2 protein_coding protein_coding MGP_CASTEiJ_T0002909.1 MGP_CASTEiJ_G0002734.1 mouse_genomes_project 10 12090479 12092559 - B230364G03Rik antisense antisense MGP_CASTEiJ_T0025356.1 MGP_CASTEiJ_G0016777.1 mouse_genomes_project 10 79740206 79747339 - MGP_CASTEiJ_P0025356 C2cd4c protein_coding protein_coding MGP_CASTEiJ_T0025357.1 MGP_CASTEiJ_G0016777.1 mouse_genomes_project 10 79740206 79747346 - MGP_CASTEiJ_P0025357 C2cd4c protein_coding protein_coding MGP_CASTEiJ_T0024467.1 MGP_CASTEiJ_G0016547.1 mouse_genomes_project 10 49519542 49645504 + MGP_CASTEiJ_P0024467 Ascc3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024468.1 MGP_CASTEiJ_G0016547.1 mouse_genomes_project 10 49519590 49794713 + MGP_CASTEiJ_P0024468 Ascc3 protein_coding protein_coding MGP_CASTEiJ_T0100373.1 MGP_CASTEiJ_G0037286.1 mouse_genomes_project 10 57446625 57446701 - Gm25055 snoRNA snoRNA MGP_CASTEiJ_T0025871.1 MGP_CASTEiJ_G0016900.1 mouse_genomes_project 10 81972580 81982309 + MGP_CASTEiJ_P0025871 Ankrd24 protein_coding protein_coding MGP_CASTEiJ_T0025872.1 MGP_CASTEiJ_G0016900.1 mouse_genomes_project 10 81972619 81973698 + MGP_CASTEiJ_P0025872 Ankrd24 protein_coding protein_coding MGP_CASTEiJ_T0025873.1 MGP_CASTEiJ_G0016900.1 mouse_genomes_project 10 81972673 81992112 + MGP_CASTEiJ_P0025873 Ankrd24 protein_coding protein_coding MGP_CASTEiJ_T0025874.1 MGP_CASTEiJ_G0016900.1 mouse_genomes_project 10 81972746 81973693 + MGP_CASTEiJ_P0025874 Ankrd24 protein_coding protein_coding MGP_CASTEiJ_T0025875.1 MGP_CASTEiJ_G0016900.1 mouse_genomes_project 10 81977771 81987537 + MGP_CASTEiJ_P0025875 Ankrd24 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025876.1 MGP_CASTEiJ_G0016900.1 mouse_genomes_project 10 81977775 81992109 + Ankrd24 protein_coding retained_intron MGP_CASTEiJ_T0025877.1 MGP_CASTEiJ_G0016900.1 mouse_genomes_project 10 81977775 81980473 + MGP_CASTEiJ_P0025877 Ankrd24 protein_coding protein_coding MGP_CASTEiJ_T0025878.1 MGP_CASTEiJ_G0016900.1 mouse_genomes_project 10 81977781 81979950 + Ankrd24 protein_coding retained_intron MGP_CASTEiJ_T0025879.1 MGP_CASTEiJ_G0016900.1 mouse_genomes_project 10 81977781 81983908 + MGP_CASTEiJ_P0025879 Ankrd24 protein_coding protein_coding MGP_CASTEiJ_T0025880.1 MGP_CASTEiJ_G0016900.1 mouse_genomes_project 10 81978593 81982091 + MGP_CASTEiJ_P0025880 Ankrd24 protein_coding protein_coding MGP_CASTEiJ_T0025881.1 MGP_CASTEiJ_G0016900.1 mouse_genomes_project 10 81984944 81987477 + MGP_CASTEiJ_P0025881 Ankrd24 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025882.1 MGP_CASTEiJ_G0016900.1 mouse_genomes_project 10 81984956 81990475 + Ankrd24 protein_coding retained_intron MGP_CASTEiJ_T0025883.1 MGP_CASTEiJ_G0016900.1 mouse_genomes_project 10 81988328 81991978 + MGP_CASTEiJ_P0025883 Ankrd24 protein_coding protein_coding MGP_CASTEiJ_T0025884.1 MGP_CASTEiJ_G0016900.1 mouse_genomes_project 10 81991139 81991669 + Ankrd24 protein_coding retained_intron MGP_CASTEiJ_T0024690.1 MGP_CASTEiJ_G0016617.1 mouse_genomes_project 10 60673739 60688401 + MGP_CASTEiJ_P0024690 Sar1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0026818.1 MGP_CASTEiJ_G0017175.1 mouse_genomes_project 10 131231587 131240091 + MGP_CASTEiJ_P0026818 Mip protein_coding protein_coding MGP_CASTEiJ_T0026622.1 MGP_CASTEiJ_G0017113.1 mouse_genomes_project 10 125178726 125397148 + Ppm1h protein_coding retained_intron MGP_CASTEiJ_T0026623.1 MGP_CASTEiJ_G0017113.1 mouse_genomes_project 10 125178742 125441547 + MGP_CASTEiJ_P0026623 Ppm1h protein_coding protein_coding MGP_CASTEiJ_T0026624.1 MGP_CASTEiJ_G0017113.1 mouse_genomes_project 10 125178746 125465214 + MGP_CASTEiJ_P0026624 Ppm1h protein_coding protein_coding MGP_CASTEiJ_T0026625.1 MGP_CASTEiJ_G0017113.1 mouse_genomes_project 10 125265989 125328725 + Ppm1h protein_coding processed_transcript MGP_CASTEiJ_T0026626.1 MGP_CASTEiJ_G0017113.1 mouse_genomes_project 10 125328497 125335063 + Ppm1h protein_coding retained_intron MGP_CASTEiJ_T0026627.1 MGP_CASTEiJ_G0017113.1 mouse_genomes_project 10 125328655 125460718 + Ppm1h protein_coding retained_intron MGP_CASTEiJ_T0026628.1 MGP_CASTEiJ_G0017113.1 mouse_genomes_project 10 125328700 125406445 + Ppm1h protein_coding processed_transcript MGP_CASTEiJ_T0026629.1 MGP_CASTEiJ_G0017113.1 mouse_genomes_project 10 125415401 125460879 + MGP_CASTEiJ_P0026629 Ppm1h protein_coding protein_coding MGP_CASTEiJ_T0023814.1 MGP_CASTEiJ_G0016342.1 mouse_genomes_project 10 4889443 4902513 - MGP_CASTEiJ_P0023814 Ginm1 protein_coding protein_coding MGP_CASTEiJ_T0023815.1 MGP_CASTEiJ_G0016342.1 mouse_genomes_project 10 4889446 4892051 - Ginm1 protein_coding retained_intron MGP_CASTEiJ_T0023816.1 MGP_CASTEiJ_G0016342.1 mouse_genomes_project 10 4889452 4902487 - MGP_CASTEiJ_P0023816 Ginm1 protein_coding protein_coding MGP_CASTEiJ_T0023817.1 MGP_CASTEiJ_G0016342.1 mouse_genomes_project 10 4900916 4914413 - Ginm1 protein_coding processed_transcript MGP_CASTEiJ_T0023818.1 MGP_CASTEiJ_G0016342.1 mouse_genomes_project 10 4913033 4914437 - Ginm1 protein_coding processed_transcript MGP_CASTEiJ_T0023819.1 MGP_CASTEiJ_G0016342.1 mouse_genomes_project 10 4914135 4914435 - MGP_CASTEiJ_P0023819 Ginm1 protein_coding protein_coding MGP_CASTEiJ_T0100391.1 MGP_CASTEiJ_G0037304.1 mouse_genomes_project 10 107216516 107216648 - Gm24237 snoRNA snoRNA MGP_CASTEiJ_T0026966.1 MGP_CASTEiJ_G0017252.1 mouse_genomes_project 10 132981241 132985789 - MGP_CASTEiJ_P0026966 Olfr812 protein_coding protein_coding MGP_CASTEiJ_T0026967.1 MGP_CASTEiJ_G0017252.1 mouse_genomes_project 10 132981241 132982284 - MGP_CASTEiJ_P0026967 Olfr812 protein_coding protein_coding MGP_CASTEiJ_T0025729.1 MGP_CASTEiJ_G0016873.1 mouse_genomes_project 10 81502338 81529761 - MGP_CASTEiJ_P0025729 Atcay protein_coding protein_coding MGP_CASTEiJ_T0025730.1 MGP_CASTEiJ_G0016873.1 mouse_genomes_project 10 81502338 81529713 - MGP_CASTEiJ_P0025730 Atcay protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025731.1 MGP_CASTEiJ_G0016873.1 mouse_genomes_project 10 81507740 81511231 - Atcay protein_coding retained_intron MGP_CASTEiJ_T0023929.1 MGP_CASTEiJ_G0016369.1 mouse_genomes_project 10 11272524 11468158 + MGP_CASTEiJ_P0023929 Hivep2 protein_coding protein_coding MGP_CASTEiJ_T0023930.1 MGP_CASTEiJ_G0016369.1 mouse_genomes_project 10 11272828 11468944 + MGP_CASTEiJ_P0023930 Hivep2 protein_coding protein_coding MGP_CASTEiJ_T0023931.1 MGP_CASTEiJ_G0016369.1 mouse_genomes_project 10 11272828 11468945 + MGP_CASTEiJ_P0023931 Hivep2 protein_coding protein_coding MGP_CASTEiJ_T0023932.1 MGP_CASTEiJ_G0016369.1 mouse_genomes_project 10 11273094 11446349 + MGP_CASTEiJ_P0023932 Hivep2 protein_coding protein_coding MGP_CASTEiJ_T0023933.1 MGP_CASTEiJ_G0016369.1 mouse_genomes_project 10 11274566 11390390 + Hivep2 protein_coding processed_transcript MGP_CASTEiJ_T0023934.1 MGP_CASTEiJ_G0016369.1 mouse_genomes_project 10 11274566 11312925 + Hivep2 protein_coding retained_intron MGP_CASTEiJ_T0026606.1 MGP_CASTEiJ_G0017109.1 mouse_genomes_project 10 124218411 124232541 + MGP_CASTEiJ_P0026606 BC048403 protein_coding protein_coding MGP_CASTEiJ_T0026607.1 MGP_CASTEiJ_G0017109.1 mouse_genomes_project 10 124218412 124232554 + MGP_CASTEiJ_P0026607 BC048403 protein_coding protein_coding MGP_CASTEiJ_T0026608.1 MGP_CASTEiJ_G0017109.1 mouse_genomes_project 10 124218417 124229720 + MGP_CASTEiJ_P0026608 BC048403 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026609.1 MGP_CASTEiJ_G0017109.1 mouse_genomes_project 10 124229426 124230895 + BC048403 protein_coding processed_transcript MGP_CASTEiJ_T0005953.1 MGP_CASTEiJ_G0004994.1 mouse_genomes_project 10 80925341 80932283 + Gm26541 lincRNA lincRNA MGP_CASTEiJ_T0025287.1 MGP_CASTEiJ_G0016748.1 mouse_genomes_project 10 78171988 78175902 + Dnmt3l protein_coding processed_transcript MGP_CASTEiJ_T0025288.1 MGP_CASTEiJ_G0016748.1 mouse_genomes_project 10 78172330 78194632 + MGP_CASTEiJ_P0025288 Dnmt3l protein_coding protein_coding MGP_CASTEiJ_T0025289.1 MGP_CASTEiJ_G0016748.1 mouse_genomes_project 10 78180265 78194632 + MGP_CASTEiJ_P0025289 Dnmt3l protein_coding protein_coding MGP_CASTEiJ_T0025290.1 MGP_CASTEiJ_G0016748.1 mouse_genomes_project 10 78180382 78194626 + MGP_CASTEiJ_P0025290 Dnmt3l protein_coding protein_coding MGP_CASTEiJ_T0025291.1 MGP_CASTEiJ_G0016748.1 mouse_genomes_project 10 78185234 78187667 + Dnmt3l protein_coding retained_intron MGP_CASTEiJ_T0025292.1 MGP_CASTEiJ_G0016748.1 mouse_genomes_project 10 78185733 78194625 + MGP_CASTEiJ_P0025292 Dnmt3l protein_coding protein_coding MGP_CASTEiJ_T0025293.1 MGP_CASTEiJ_G0016748.1 mouse_genomes_project 10 78185733 78194625 + MGP_CASTEiJ_P0025293 Dnmt3l protein_coding protein_coding MGP_CASTEiJ_T0025294.1 MGP_CASTEiJ_G0016748.1 mouse_genomes_project 10 78185733 78194625 + MGP_CASTEiJ_P0025294 Dnmt3l protein_coding protein_coding MGP_CASTEiJ_T0025979.1 MGP_CASTEiJ_G0016933.1 mouse_genomes_project 10 85629877 85919593 + MGP_CASTEiJ_P0025979 Btbd11 protein_coding protein_coding MGP_CASTEiJ_T0025980.1 MGP_CASTEiJ_G0016933.1 mouse_genomes_project 10 85629890 85897774 + MGP_CASTEiJ_P0025980 Btbd11 protein_coding protein_coding MGP_CASTEiJ_T0025981.1 MGP_CASTEiJ_G0016933.1 mouse_genomes_project 10 85630326 85886677 + MGP_CASTEiJ_P0025981 Btbd11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025982.1 MGP_CASTEiJ_G0016933.1 mouse_genomes_project 10 85848489 85919593 + MGP_CASTEiJ_P0025982 Btbd11 protein_coding protein_coding MGP_CASTEiJ_T0025983.1 MGP_CASTEiJ_G0016933.1 mouse_genomes_project 10 85848499 85859215 + Btbd11 protein_coding processed_transcript MGP_CASTEiJ_T0025984.1 MGP_CASTEiJ_G0016933.1 mouse_genomes_project 10 85886708 85898813 + Btbd11 protein_coding retained_intron MGP_CASTEiJ_T0025985.1 MGP_CASTEiJ_G0016933.1 mouse_genomes_project 10 85896750 85919590 + Btbd11 protein_coding processed_transcript MGP_CASTEiJ_T0025986.1 MGP_CASTEiJ_G0016933.1 mouse_genomes_project 10 85903154 85919593 + Btbd11 protein_coding retained_intron MGP_CASTEiJ_T0025987.1 MGP_CASTEiJ_G0016933.1 mouse_genomes_project 10 85913446 85917561 + Btbd11 protein_coding retained_intron MGP_CASTEiJ_T0025389.1 MGP_CASTEiJ_G0016788.1 mouse_genomes_project 10 79899611 79908017 - MGP_CASTEiJ_P0025389 Rnf126 protein_coding protein_coding MGP_CASTEiJ_T0005994.1 MGP_CASTEiJ_G0005018.1 mouse_genomes_project 10 118773270 118779320 - 1700030O20Rik lincRNA lincRNA MGP_CASTEiJ_T0025109.1 MGP_CASTEiJ_G0016700.1 mouse_genomes_project 10 75773505 75774403 - MGP_CASTEiJ_P0025109 Mif protein_coding protein_coding MGP_CASTEiJ_T0025362.1 MGP_CASTEiJ_G0016779.1 mouse_genomes_project 10 79772843 79778285 - MGP_CASTEiJ_P0025362 Odf3l2 protein_coding protein_coding MGP_CASTEiJ_T0099202.1 MGP_CASTEiJ_G0036115.1 mouse_genomes_project 10 112452631 112452742 - Gm22236 snRNA snRNA MGP_CASTEiJ_T0024088.1 MGP_CASTEiJ_G0016423.1 mouse_genomes_project 10 21743264 21744341 + MGP_CASTEiJ_P0024088 Taar7b protein_coding protein_coding MGP_CASTEiJ_T0026530.1 MGP_CASTEiJ_G0017087.1 mouse_genomes_project 10 119906659 119948658 - MGP_CASTEiJ_P0026530 Nup107 protein_coding protein_coding MGP_CASTEiJ_T0026531.1 MGP_CASTEiJ_G0017087.1 mouse_genomes_project 10 119906678 119948665 - MGP_CASTEiJ_P0026531 Nup107 protein_coding protein_coding MGP_CASTEiJ_T0009371.1 MGP_CASTEiJ_G0007559.1 mouse_genomes_project 10 94128143 94128199 + Mir7688 miRNA miRNA MGP_CASTEiJ_T0026027.1 MGP_CASTEiJ_G0016944.1 mouse_genomes_project 10 87055979 87076805 + MGP_CASTEiJ_P0026027 Ttc41 protein_coding protein_coding MGP_CASTEiJ_T0026028.1 MGP_CASTEiJ_G0016944.1 mouse_genomes_project 10 87055979 87132470 + MGP_CASTEiJ_P0026028 Ttc41 protein_coding protein_coding MGP_CASTEiJ_T0101962.1 MGP_CASTEiJ_G0038687.1 mouse_genomes_project 10 77925318 77925856 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0025582.1 MGP_CASTEiJ_G0016829.1 mouse_genomes_project 10 80568671 80577002 + MGP_CASTEiJ_P0025582 Plk5 protein_coding protein_coding MGP_CASTEiJ_T0025583.1 MGP_CASTEiJ_G0016829.1 mouse_genomes_project 10 80568671 80577002 + MGP_CASTEiJ_P0025583 Plk5 protein_coding protein_coding MGP_CASTEiJ_T0025584.1 MGP_CASTEiJ_G0016829.1 mouse_genomes_project 10 80570183 80572740 + Plk5 protein_coding retained_intron MGP_CASTEiJ_T0025585.1 MGP_CASTEiJ_G0016829.1 mouse_genomes_project 10 80571482 80572998 + Plk5 protein_coding retained_intron MGP_CASTEiJ_T0005961.1 MGP_CASTEiJ_G0005001.1 mouse_genomes_project 10 88787268 88791703 - Gm26546 lincRNA lincRNA MGP_CASTEiJ_T0026496.1 MGP_CASTEiJ_G0017075.1 mouse_genomes_project 10 119024228 119040518 - MGP_CASTEiJ_P0026496 protein_coding protein_coding MGP_CASTEiJ_T0024186.1 MGP_CASTEiJ_G0016456.1 mouse_genomes_project 10 28742374 28756258 - MGP_CASTEiJ_P0024186 Hint3 protein_coding protein_coding MGP_CASTEiJ_T0024187.1 MGP_CASTEiJ_G0016456.1 mouse_genomes_project 10 28742619 28756112 - MGP_CASTEiJ_P0024187 Hint3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024188.1 MGP_CASTEiJ_G0016456.1 mouse_genomes_project 10 28742653 28756116 - MGP_CASTEiJ_P0024188 Hint3 protein_coding protein_coding MGP_CASTEiJ_T0024477.1 MGP_CASTEiJ_G0016553.1 mouse_genomes_project 10 50995548 51001480 + MGP_CASTEiJ_P0024477 Vgll2 protein_coding protein_coding MGP_CASTEiJ_T0024478.1 MGP_CASTEiJ_G0016553.1 mouse_genomes_project 10 50995574 51001352 + MGP_CASTEiJ_P0024478 Vgll2 protein_coding protein_coding MGP_CASTEiJ_T0005922.1 MGP_CASTEiJ_G0004969.1 mouse_genomes_project 10 21912871 21919230 + Gm15137 lincRNA lincRNA MGP_CASTEiJ_T0002937.1 MGP_CASTEiJ_G0002755.1 mouse_genomes_project 10 62381864 62382940 - 1700120B22Rik antisense antisense MGP_CASTEiJ_T0099157.1 MGP_CASTEiJ_G0036070.1 mouse_genomes_project 10 11200474 11200581 - Gm22995 snRNA snRNA MGP_CASTEiJ_T0025150.1 MGP_CASTEiJ_G0016715.1 mouse_genomes_project 10 76454385 76504750 + MGP_CASTEiJ_P0025150 Mcm3ap protein_coding protein_coding MGP_CASTEiJ_T0026260.1 MGP_CASTEiJ_G0016991.1 mouse_genomes_project 10 94902520 94953364 + MGP_CASTEiJ_P0026260 Nr2c1 protein_coding protein_coding MGP_CASTEiJ_T0026261.1 MGP_CASTEiJ_G0016991.1 mouse_genomes_project 10 94902916 94950232 + MGP_CASTEiJ_P0026261 Nr2c1 protein_coding protein_coding MGP_CASTEiJ_T0026262.1 MGP_CASTEiJ_G0016991.1 mouse_genomes_project 10 94910821 94949902 + MGP_CASTEiJ_P0026262 Nr2c1 protein_coding protein_coding MGP_CASTEiJ_T0024961.1 MGP_CASTEiJ_G0016671.1 mouse_genomes_project 10 70447530 70506888 + MGP_CASTEiJ_P0024961 protein_coding protein_coding MGP_CASTEiJ_T0009352.1 MGP_CASTEiJ_G0007540.1 mouse_genomes_project 10 78688478 78688600 + Gm27541 miRNA miRNA MGP_CASTEiJ_T0024814.1 MGP_CASTEiJ_G0016645.1 mouse_genomes_project 10 62243634 62345023 - MGP_CASTEiJ_P0024814 Mypn protein_coding protein_coding MGP_CASTEiJ_T0012056.1 MGP_CASTEiJ_G0010219.1 mouse_genomes_project 10 38262122 38262732 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099204.1 MGP_CASTEiJ_G0036117.1 mouse_genomes_project 10 114655216 114655376 + Gm22507 snRNA snRNA MGP_CASTEiJ_T0005935.1 MGP_CASTEiJ_G0004982.1 mouse_genomes_project 10 62442645 62446103 - Gm26789 lincRNA lincRNA MGP_CASTEiJ_T0026414.1 MGP_CASTEiJ_G0017046.1 mouse_genomes_project 10 112739186 112878547 + MGP_CASTEiJ_P0026414 Osbpl8 protein_coding protein_coding MGP_CASTEiJ_T0025267.1 MGP_CASTEiJ_G0016746.1 mouse_genomes_project 10 78109313 78132069 - MGP_CASTEiJ_P0025267 Pfkl protein_coding protein_coding MGP_CASTEiJ_T0025268.1 MGP_CASTEiJ_G0016746.1 mouse_genomes_project 10 78112799 78114513 - Pfkl protein_coding retained_intron MGP_CASTEiJ_T0025269.1 MGP_CASTEiJ_G0016746.1 mouse_genomes_project 10 78119509 78122207 - Pfkl protein_coding retained_intron MGP_CASTEiJ_T0025270.1 MGP_CASTEiJ_G0016746.1 mouse_genomes_project 10 78122952 78132345 - Pfkl protein_coding processed_transcript MGP_CASTEiJ_T0025999.1 MGP_CASTEiJ_G0016938.1 mouse_genomes_project 10 86247998 86310188 - MGP_CASTEiJ_P0025999 Bpifc protein_coding protein_coding MGP_CASTEiJ_T0026000.1 MGP_CASTEiJ_G0016938.1 mouse_genomes_project 10 86294174 86310149 - MGP_CASTEiJ_P0026000 Bpifc protein_coding protein_coding MGP_CASTEiJ_T0025630.1 MGP_CASTEiJ_G0016841.1 mouse_genomes_project 10 80862124 80880411 + MGP_CASTEiJ_P0025630 Csnk1g2 protein_coding protein_coding MGP_CASTEiJ_T0025631.1 MGP_CASTEiJ_G0016841.1 mouse_genomes_project 10 80869306 80880411 + MGP_CASTEiJ_P0025631 Csnk1g2 protein_coding protein_coding MGP_CASTEiJ_T0025632.1 MGP_CASTEiJ_G0016841.1 mouse_genomes_project 10 80874076 80878979 + MGP_CASTEiJ_P0025632 Csnk1g2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024265.1 MGP_CASTEiJ_G0016489.1 mouse_genomes_project 10 37616399 37630820 - MGP_CASTEiJ_P0024265 Wisp3 protein_coding protein_coding MGP_CASTEiJ_T0005932.1 MGP_CASTEiJ_G0004979.1 mouse_genomes_project 10 59831177 59841018 - Pldi lincRNA lincRNA MGP_CASTEiJ_T0010943.1 MGP_CASTEiJ_G0009131.1 mouse_genomes_project 10 70075896 70076208 - Gm22320 misc_RNA misc_RNA MGP_CASTEiJ_T0024554.1 MGP_CASTEiJ_G0016578.1 mouse_genomes_project 10 57037472 57144082 + MGP_CASTEiJ_P0024554 Lims1 protein_coding protein_coding MGP_CASTEiJ_T0024555.1 MGP_CASTEiJ_G0016578.1 mouse_genomes_project 10 57113018 57141183 + MGP_CASTEiJ_P0024555 Lims1 protein_coding protein_coding MGP_CASTEiJ_T0024556.1 MGP_CASTEiJ_G0016578.1 mouse_genomes_project 10 57113033 57140978 + MGP_CASTEiJ_P0024556 Lims1 protein_coding protein_coding MGP_CASTEiJ_T0024557.1 MGP_CASTEiJ_G0016578.1 mouse_genomes_project 10 57126509 57128859 + Lims1 protein_coding processed_transcript MGP_CASTEiJ_T0024558.1 MGP_CASTEiJ_G0016578.1 mouse_genomes_project 10 57136074 57141064 + Lims1 protein_coding processed_transcript MGP_CASTEiJ_T0024016.1 MGP_CASTEiJ_G0016396.1 mouse_genomes_project 10 17864397 17866186 - MGP_CASTEiJ_P0024016 4933406P04Rik protein_coding protein_coding MGP_CASTEiJ_T0026687.1 MGP_CASTEiJ_G0017135.1 mouse_genomes_project 10 130054073 130072052 - MGP_CASTEiJ_P0026687 Pip4k2c protein_coding protein_coding MGP_CASTEiJ_T0100401.1 MGP_CASTEiJ_G0037314.1 mouse_genomes_project 10 129651334 129651472 - Gm24179 snoRNA snoRNA MGP_CASTEiJ_T0025622.1 MGP_CASTEiJ_G0016838.1 mouse_genomes_project 10 80822165 80828839 - MGP_CASTEiJ_P0025622 Abhd17a protein_coding protein_coding MGP_CASTEiJ_T0025623.1 MGP_CASTEiJ_G0016838.1 mouse_genomes_project 10 80822166 80828822 - MGP_CASTEiJ_P0025623 Abhd17a protein_coding protein_coding MGP_CASTEiJ_T0025624.1 MGP_CASTEiJ_G0016838.1 mouse_genomes_project 10 80822167 80825115 - MGP_CASTEiJ_P0025624 Abhd17a protein_coding protein_coding MGP_CASTEiJ_T0025625.1 MGP_CASTEiJ_G0016838.1 mouse_genomes_project 10 80825169 80828813 - MGP_CASTEiJ_P0025625 Abhd17a protein_coding protein_coding MGP_CASTEiJ_T0024752.1 MGP_CASTEiJ_G0016630.1 mouse_genomes_project 10 61517336 61519181 + MGP_CASTEiJ_P0024752 4930507D05Rik protein_coding protein_coding MGP_CASTEiJ_T0025526.1 MGP_CASTEiJ_G0016818.1 mouse_genomes_project 10 80373346 80383882 + MGP_CASTEiJ_P0025526 Efna2 protein_coding protein_coding MGP_CASTEiJ_T0026772.1 MGP_CASTEiJ_G0017160.1 mouse_genomes_project 10 130749103 130765308 + MGP_CASTEiJ_P0026772 protein_coding protein_coding MGP_CASTEiJ_T0023870.1 MGP_CASTEiJ_G0016357.1 mouse_genomes_project 10 8556861 8678459 + MGP_CASTEiJ_P0023870 Epm2a protein_coding protein_coding MGP_CASTEiJ_T0023871.1 MGP_CASTEiJ_G0016357.1 mouse_genomes_project 10 8556913 8666787 + Epm2a protein_coding processed_transcript MGP_CASTEiJ_T0026448.1 MGP_CASTEiJ_G0017064.1 mouse_genomes_project 10 117310312 117365051 + MGP_CASTEiJ_P0026448 Zfc3h1 protein_coding protein_coding MGP_CASTEiJ_T0026449.1 MGP_CASTEiJ_G0017064.1 mouse_genomes_project 10 117310524 117341009 + MGP_CASTEiJ_P0026449 Zfc3h1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026450.1 MGP_CASTEiJ_G0017064.1 mouse_genomes_project 10 117359768 117365050 + Zfc3h1 protein_coding retained_intron MGP_CASTEiJ_T0026451.1 MGP_CASTEiJ_G0017064.1 mouse_genomes_project 10 117360947 117363173 + Zfc3h1 protein_coding retained_intron MGP_CASTEiJ_T0026452.1 MGP_CASTEiJ_G0017064.1 mouse_genomes_project 10 117363359 117364039 + Zfc3h1 protein_coding retained_intron MGP_CASTEiJ_T0005903.1 MGP_CASTEiJ_G0004955.1 mouse_genomes_project 10 332790 335839 - Gm26752 lincRNA lincRNA MGP_CASTEiJ_T0025243.1 MGP_CASTEiJ_G0016738.1 mouse_genomes_project 10 77811437 77811800 + MGP_CASTEiJ_P0025243 Gm10100 protein_coding protein_coding MGP_CASTEiJ_T0024851.1 MGP_CASTEiJ_G0016655.1 mouse_genomes_project 10 66868631 66874854 + MGP_CASTEiJ_P0024851 protein_coding protein_coding MGP_CASTEiJ_T0024852.1 MGP_CASTEiJ_G0016655.1 mouse_genomes_project 10 66868739 66874989 + MGP_CASTEiJ_P0024852 protein_coding protein_coding MGP_CASTEiJ_T0024853.1 MGP_CASTEiJ_G0016655.1 mouse_genomes_project 10 66872485 66876798 + MGP_CASTEiJ_P0024853 protein_coding protein_coding MGP_CASTEiJ_T0024854.1 MGP_CASTEiJ_G0016655.1 mouse_genomes_project 10 66872486 66876798 + MGP_CASTEiJ_P0024854 protein_coding protein_coding MGP_CASTEiJ_T0024855.1 MGP_CASTEiJ_G0016655.1 mouse_genomes_project 10 66872486 66872996 + MGP_CASTEiJ_P0024855 protein_coding protein_coding MGP_CASTEiJ_T0024856.1 MGP_CASTEiJ_G0016655.1 mouse_genomes_project 10 66872546 66874549 + MGP_CASTEiJ_P0024856 protein_coding protein_coding MGP_CASTEiJ_T0024857.1 MGP_CASTEiJ_G0016655.1 mouse_genomes_project 10 66873298 66876798 + MGP_CASTEiJ_P0024857 protein_coding protein_coding MGP_CASTEiJ_T0026300.1 MGP_CASTEiJ_G0017009.1 mouse_genomes_project 10 98685510 98687379 + MGP_CASTEiJ_P0026300 Ccer1 protein_coding protein_coding MGP_CASTEiJ_T0100360.1 MGP_CASTEiJ_G0037273.1 mouse_genomes_project 10 27482441 27482558 + Gm24286 snoRNA snoRNA MGP_CASTEiJ_T0026599.1 MGP_CASTEiJ_G0017107.1 mouse_genomes_project 10 124056025 124101819 - MGP_CASTEiJ_P0026599 Xpot protein_coding unknown_likely_coding MGP_CASTEiJ_T0026600.1 MGP_CASTEiJ_G0017107.1 mouse_genomes_project 10 124056032 124101620 - MGP_CASTEiJ_P0026600 Xpot protein_coding protein_coding MGP_CASTEiJ_T0026939.1 MGP_CASTEiJ_G0017230.1 mouse_genomes_project 10 132426123 132427036 + MGP_CASTEiJ_P0026939 Olfr781 protein_coding protein_coding MGP_CASTEiJ_T0098811.1 MGP_CASTEiJ_G0035741.1 mouse_genomes_project 10 95178475 95180327 + Gm16155 sense_intronic sense_intronic MGP_CASTEiJ_T0099211.1 MGP_CASTEiJ_G0036124.1 mouse_genomes_project 10 132026399 132026496 + Gm25494 snRNA snRNA MGP_CASTEiJ_T0024040.1 MGP_CASTEiJ_G0016402.1 mouse_genomes_project 10 18933744 19009478 + MGP_CASTEiJ_P0024040 Hbs1l protein_coding protein_coding MGP_CASTEiJ_T0024041.1 MGP_CASTEiJ_G0016402.1 mouse_genomes_project 10 18933744 18950497 + MGP_CASTEiJ_P0024041 Hbs1l protein_coding protein_coding MGP_CASTEiJ_T0024042.1 MGP_CASTEiJ_G0016402.1 mouse_genomes_project 10 18933899 19009481 + MGP_CASTEiJ_P0024042 Hbs1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0024183.1 MGP_CASTEiJ_G0016453.1 mouse_genomes_project 10 27546928 27641280 - MGP_CASTEiJ_P0024183 Rspo3 protein_coding protein_coding MGP_CASTEiJ_T0025319.1 MGP_CASTEiJ_G0016761.1 mouse_genomes_project 10 78876762 78883022 - MGP_CASTEiJ_P0025319 Casp14 protein_coding protein_coding MGP_CASTEiJ_T0026166.1 MGP_CASTEiJ_G0016972.1 mouse_genomes_project 10 91563806 91665984 - MGP_CASTEiJ_P0026166 Apaf1 protein_coding protein_coding MGP_CASTEiJ_T0026167.1 MGP_CASTEiJ_G0016972.1 mouse_genomes_project 10 91563808 91566091 - Apaf1 protein_coding retained_intron MGP_CASTEiJ_T0026168.1 MGP_CASTEiJ_G0016972.1 mouse_genomes_project 10 91563813 91666092 - MGP_CASTEiJ_P0026168 Apaf1 protein_coding protein_coding MGP_CASTEiJ_T0026169.1 MGP_CASTEiJ_G0016972.1 mouse_genomes_project 10 91565099 91666026 - MGP_CASTEiJ_P0026169 Apaf1 protein_coding protein_coding MGP_CASTEiJ_T0026170.1 MGP_CASTEiJ_G0016972.1 mouse_genomes_project 10 91570078 91576137 - Apaf1 protein_coding processed_transcript MGP_CASTEiJ_T0026171.1 MGP_CASTEiJ_G0016972.1 mouse_genomes_project 10 91572497 91575447 - Apaf1 protein_coding retained_intron MGP_CASTEiJ_T0026172.1 MGP_CASTEiJ_G0016972.1 mouse_genomes_project 10 91645781 91665751 - MGP_CASTEiJ_P0026172 Apaf1 protein_coding protein_coding MGP_CASTEiJ_T0026173.1 MGP_CASTEiJ_G0016972.1 mouse_genomes_project 10 91647309 91666092 - MGP_CASTEiJ_P0026173 Apaf1 protein_coding protein_coding MGP_CASTEiJ_T0100350.1 MGP_CASTEiJ_G0037263.1 mouse_genomes_project 10 9139287 9139413 + Gm25011 snoRNA snoRNA MGP_CASTEiJ_T0025653.1 MGP_CASTEiJ_G0016848.1 mouse_genomes_project 10 81055257 81057779 - MGP_CASTEiJ_P0025653 Plekhj1 protein_coding protein_coding MGP_CASTEiJ_T0025663.1 MGP_CASTEiJ_G0016852.1 mouse_genomes_project 10 81091907 81094538 + MGP_CASTEiJ_P0025663 protein_coding protein_coding MGP_CASTEiJ_T0025664.1 MGP_CASTEiJ_G0016852.1 mouse_genomes_project 10 81091933 81094532 + protein_coding retained_intron MGP_CASTEiJ_T0025665.1 MGP_CASTEiJ_G0016852.1 mouse_genomes_project 10 81091934 81094205 + MGP_CASTEiJ_P0025665 protein_coding protein_coding MGP_CASTEiJ_T0025666.1 MGP_CASTEiJ_G0016852.1 mouse_genomes_project 10 81091937 81094538 + MGP_CASTEiJ_P0025666 protein_coding protein_coding MGP_CASTEiJ_T0025667.1 MGP_CASTEiJ_G0016852.1 mouse_genomes_project 10 81091944 81094253 + MGP_CASTEiJ_P0025667 protein_coding protein_coding MGP_CASTEiJ_T0025668.1 MGP_CASTEiJ_G0016852.1 mouse_genomes_project 10 81092958 81094225 + MGP_CASTEiJ_P0025668 protein_coding protein_coding MGP_CASTEiJ_T0025669.1 MGP_CASTEiJ_G0016852.1 mouse_genomes_project 10 81093840 81094533 + MGP_CASTEiJ_P0025669 protein_coding protein_coding MGP_CASTEiJ_T0025447.1 MGP_CASTEiJ_G0016803.1 mouse_genomes_project 10 80135776 80144882 + MGP_CASTEiJ_P0025447 Wdr18 protein_coding protein_coding MGP_CASTEiJ_T0023735.1 MGP_CASTEiJ_G0016326.1 mouse_genomes_project 10 2159776 2162628 + MGP_CASTEiJ_P0023735 Gm10097 protein_coding protein_coding MGP_CASTEiJ_T0026776.1 MGP_CASTEiJ_G0017163.1 mouse_genomes_project 10 130817145 130833241 + MGP_CASTEiJ_P0026776 BC089597 protein_coding protein_coding MGP_CASTEiJ_T0009358.1 MGP_CASTEiJ_G0007546.1 mouse_genomes_project 10 81094044 81094117 + Mir1982 miRNA miRNA MGP_CASTEiJ_T0005982.1 MGP_CASTEiJ_G0005009.1 mouse_genomes_project 10 96244947 96256161 + 5730420D15Rik lincRNA lincRNA MGP_CASTEiJ_T0000774.1 MGP_CASTEiJ_G0000715.1 mouse_genomes_project 10 11625408 11626235 + TEC TEC MGP_CASTEiJ_T0026268.1 MGP_CASTEiJ_G0016994.1 mouse_genomes_project 10 95079146 95201486 + Tmcc3 protein_coding retained_intron MGP_CASTEiJ_T0026269.1 MGP_CASTEiJ_G0016994.1 mouse_genomes_project 10 95079214 95360736 + MGP_CASTEiJ_P0026269 Tmcc3 protein_coding protein_coding MGP_CASTEiJ_T0026270.1 MGP_CASTEiJ_G0016994.1 mouse_genomes_project 10 95079324 95143801 + Tmcc3 protein_coding processed_transcript MGP_CASTEiJ_T0026271.1 MGP_CASTEiJ_G0016994.1 mouse_genomes_project 10 95289173 95372946 + MGP_CASTEiJ_P0026271 Tmcc3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026272.1 MGP_CASTEiJ_G0016994.1 mouse_genomes_project 10 95289203 95372946 + MGP_CASTEiJ_P0026272 Tmcc3 protein_coding protein_coding MGP_CASTEiJ_T0026273.1 MGP_CASTEiJ_G0016994.1 mouse_genomes_project 10 95321725 95360862 + MGP_CASTEiJ_P0026273 Tmcc3 protein_coding protein_coding MGP_CASTEiJ_T0026274.1 MGP_CASTEiJ_G0016994.1 mouse_genomes_project 10 95327140 95360607 + MGP_CASTEiJ_P0026274 Tmcc3 protein_coding protein_coding MGP_CASTEiJ_T0026678.1 MGP_CASTEiJ_G0017133.1 mouse_genomes_project 10 130039716 130045546 - MGP_CASTEiJ_P0026678 Arhgef25 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026679.1 MGP_CASTEiJ_G0017133.1 mouse_genomes_project 10 130039719 130047254 - MGP_CASTEiJ_P0026679 Arhgef25 protein_coding protein_coding MGP_CASTEiJ_T0026680.1 MGP_CASTEiJ_G0017133.1 mouse_genomes_project 10 130039719 130047024 - MGP_CASTEiJ_P0026680 Arhgef25 protein_coding protein_coding MGP_CASTEiJ_T0024574.1 MGP_CASTEiJ_G0016588.1 mouse_genomes_project 10 58171888 58190611 + MGP_CASTEiJ_P0024574 Pla2g12b protein_coding protein_coding MGP_CASTEiJ_T0024575.1 MGP_CASTEiJ_G0016588.1 mouse_genomes_project 10 58179280 58190605 + MGP_CASTEiJ_P0024575 Pla2g12b protein_coding protein_coding MGP_CASTEiJ_T0002969.1 MGP_CASTEiJ_G0002780.1 mouse_genomes_project 10 86423012 86427036 + Gm15990 antisense antisense MGP_CASTEiJ_T0024220.1 MGP_CASTEiJ_G0016475.1 mouse_genomes_project 10 32400965 32402871 - MGP_CASTEiJ_P0024220 Fam26f protein_coding protein_coding MGP_CASTEiJ_T0025052.1 MGP_CASTEiJ_G0016684.1 mouse_genomes_project 10 75196719 75214270 + MGP_CASTEiJ_P0025052 Adora2a protein_coding protein_coding MGP_CASTEiJ_T0024570.1 MGP_CASTEiJ_G0016586.1 mouse_genomes_project 10 57978253 57982735 + MGP_CASTEiJ_P0024570 Sowahc protein_coding protein_coding MGP_CASTEiJ_T0025718.1 MGP_CASTEiJ_G0016868.1 mouse_genomes_project 10 81442466 81456911 - MGP_CASTEiJ_P0025718 Pias4 protein_coding protein_coding MGP_CASTEiJ_T0025719.1 MGP_CASTEiJ_G0016868.1 mouse_genomes_project 10 81443158 81456716 - MGP_CASTEiJ_P0025719 Pias4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025720.1 MGP_CASTEiJ_G0016868.1 mouse_genomes_project 10 81443437 81445329 - Pias4 protein_coding retained_intron MGP_CASTEiJ_T0025721.1 MGP_CASTEiJ_G0016868.1 mouse_genomes_project 10 81444706 81447215 - Pias4 protein_coding retained_intron MGP_CASTEiJ_T0025722.1 MGP_CASTEiJ_G0016868.1 mouse_genomes_project 10 81444876 81456709 - MGP_CASTEiJ_P0025722 Pias4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025723.1 MGP_CASTEiJ_G0016868.1 mouse_genomes_project 10 81445063 81446463 - MGP_CASTEiJ_P0025723 Pias4 protein_coding protein_coding MGP_CASTEiJ_T0025724.1 MGP_CASTEiJ_G0016868.1 mouse_genomes_project 10 81452063 81456702 - Pias4 protein_coding retained_intron MGP_CASTEiJ_T0099170.1 MGP_CASTEiJ_G0036083.1 mouse_genomes_project 10 44158593 44158657 + Gm27723 snRNA snRNA MGP_CASTEiJ_T0099186.1 MGP_CASTEiJ_G0036099.1 mouse_genomes_project 10 80702760 80702864 + Gm25044 snRNA snRNA MGP_CASTEiJ_T0024344.1 MGP_CASTEiJ_G0016515.1 mouse_genomes_project 10 40149797 40161295 + MGP_CASTEiJ_P0024344 Cd164 protein_coding protein_coding MGP_CASTEiJ_T0024345.1 MGP_CASTEiJ_G0016515.1 mouse_genomes_project 10 40149884 40155654 + Cd164 protein_coding retained_intron MGP_CASTEiJ_T0024346.1 MGP_CASTEiJ_G0016515.1 mouse_genomes_project 10 40150275 40159288 + MGP_CASTEiJ_P0024346 Cd164 protein_coding protein_coding MGP_CASTEiJ_T0024347.1 MGP_CASTEiJ_G0016515.1 mouse_genomes_project 10 40150427 40157219 + Cd164 protein_coding processed_transcript MGP_CASTEiJ_T0024521.1 MGP_CASTEiJ_G0016571.1 mouse_genomes_project 10 56516917 56551421 + MGP_CASTEiJ_P0024521 Hsf2 protein_coding protein_coding MGP_CASTEiJ_T0024522.1 MGP_CASTEiJ_G0016571.1 mouse_genomes_project 10 56517041 56550496 + MGP_CASTEiJ_P0024522 Hsf2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026291.1 MGP_CASTEiJ_G0017002.1 mouse_genomes_project 10 97039360 97039672 + MGP_CASTEiJ_P0026291 Gm5426 protein_coding protein_coding MGP_CASTEiJ_T0025442.1 MGP_CASTEiJ_G0016802.1 mouse_genomes_project 10 80094115 80126779 + MGP_CASTEiJ_P0025442 Arid3a protein_coding protein_coding MGP_CASTEiJ_T0025443.1 MGP_CASTEiJ_G0016802.1 mouse_genomes_project 10 80094211 80126472 + MGP_CASTEiJ_P0025443 Arid3a protein_coding protein_coding MGP_CASTEiJ_T0025444.1 MGP_CASTEiJ_G0016802.1 mouse_genomes_project 10 80094413 80126464 + MGP_CASTEiJ_P0025444 Arid3a protein_coding protein_coding MGP_CASTEiJ_T0025445.1 MGP_CASTEiJ_G0016802.1 mouse_genomes_project 10 80102259 80103054 + MGP_CASTEiJ_P0025445 Arid3a protein_coding protein_coding MGP_CASTEiJ_T0025446.1 MGP_CASTEiJ_G0016802.1 mouse_genomes_project 10 80118039 80124396 + Arid3a protein_coding processed_transcript MGP_CASTEiJ_T0010952.1 MGP_CASTEiJ_G0009140.1 mouse_genomes_project 10 92758259 92758367 - Gm27366 misc_RNA misc_RNA MGP_CASTEiJ_T0099164.1 MGP_CASTEiJ_G0036077.1 mouse_genomes_project 10 29311870 29311977 - Gm23790 snRNA snRNA MGP_CASTEiJ_T0024545.1 MGP_CASTEiJ_G0016577.1 mouse_genomes_project 10 56971912 57019235 + MGP_CASTEiJ_P0024545 Gcc2 protein_coding protein_coding MGP_CASTEiJ_T0024546.1 MGP_CASTEiJ_G0016577.1 mouse_genomes_project 10 56971923 56985514 + MGP_CASTEiJ_P0024546 Gcc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024547.1 MGP_CASTEiJ_G0016577.1 mouse_genomes_project 10 56971945 57018878 + MGP_CASTEiJ_P0024547 Gcc2 protein_coding protein_coding MGP_CASTEiJ_T0024548.1 MGP_CASTEiJ_G0016577.1 mouse_genomes_project 10 56971954 57019227 + MGP_CASTEiJ_P0024548 Gcc2 protein_coding protein_coding MGP_CASTEiJ_T0024549.1 MGP_CASTEiJ_G0016577.1 mouse_genomes_project 10 56972129 56985386 + MGP_CASTEiJ_P0024549 Gcc2 protein_coding protein_coding MGP_CASTEiJ_T0024550.1 MGP_CASTEiJ_G0016577.1 mouse_genomes_project 10 56972307 56984097 + Gcc2 protein_coding processed_transcript MGP_CASTEiJ_T0024551.1 MGP_CASTEiJ_G0016577.1 mouse_genomes_project 10 56989497 56993727 + Gcc2 protein_coding retained_intron MGP_CASTEiJ_T0024552.1 MGP_CASTEiJ_G0016577.1 mouse_genomes_project 10 56991008 56999167 + MGP_CASTEiJ_P0024552 Gcc2 protein_coding protein_coding MGP_CASTEiJ_T0024553.1 MGP_CASTEiJ_G0016577.1 mouse_genomes_project 10 57003521 57010372 + Gcc2 protein_coding retained_intron MGP_CASTEiJ_T0099190.1 MGP_CASTEiJ_G0036103.1 mouse_genomes_project 10 86338260 86338364 - Gm24430 snRNA snRNA MGP_CASTEiJ_T0009329.1 MGP_CASTEiJ_G0007517.1 mouse_genomes_project 10 22914711 22914796 + Gm22566 miRNA miRNA MGP_CASTEiJ_T0016395.1 MGP_CASTEiJ_G0014452.1 mouse_genomes_project 10 80009022 80012644 - E130317F20Rik processed_transcript processed_transcript MGP_CASTEiJ_T0009395.1 MGP_CASTEiJ_G0007583.1 mouse_genomes_project 10 131405999 131406068 + Mir6914 miRNA miRNA MGP_CASTEiJ_T0002941.1 MGP_CASTEiJ_G0002758.1 mouse_genomes_project 10 70652866 70653642 + Gm15647 antisense antisense MGP_CASTEiJ_T0026385.1 MGP_CASTEiJ_G0017040.1 mouse_genomes_project 10 109733959 109820234 + MGP_CASTEiJ_P0026385 Pawr protein_coding protein_coding MGP_CASTEiJ_T0005926.1 MGP_CASTEiJ_G0004973.1 mouse_genomes_project 10 38377507 38378979 - Gm26824 lincRNA lincRNA MGP_CASTEiJ_T0025925.1 MGP_CASTEiJ_G0016914.1 mouse_genomes_project 10 83129513 83132694 + MGP_CASTEiJ_P0025925 Gm4799 protein_coding protein_coding MGP_CASTEiJ_T0025832.1 MGP_CASTEiJ_G0016895.1 mouse_genomes_project 10 81895674 81902528 + MGP_CASTEiJ_P0025832 Aes protein_coding protein_coding MGP_CASTEiJ_T0026540.1 MGP_CASTEiJ_G0017092.1 mouse_genomes_project 10 121093956 121103645 - MGP_CASTEiJ_P0026540 Dyrk2 protein_coding protein_coding MGP_CASTEiJ_T0005918.1 MGP_CASTEiJ_G0004966.1 mouse_genomes_project 10 19330157 19351196 + Gm5420 lincRNA lincRNA MGP_CASTEiJ_T0005919.1 MGP_CASTEiJ_G0004966.1 mouse_genomes_project 10 19334568 19336192 + Gm5420 lincRNA lincRNA MGP_CASTEiJ_T0005980.1 MGP_CASTEiJ_G0005007.1 mouse_genomes_project 10 94630651 94635340 + 4930471D02Rik lincRNA lincRNA MGP_CASTEiJ_T0024071.1 MGP_CASTEiJ_G0016411.1 mouse_genomes_project 10 20534071 20536894 - MGP_CASTEiJ_P0024071 Tcf21 protein_coding protein_coding MGP_CASTEiJ_T0025810.1 MGP_CASTEiJ_G0016890.1 mouse_genomes_project 10 81781282 81807662 - MGP_CASTEiJ_P0025810 Celf5 protein_coding protein_coding MGP_CASTEiJ_T0025811.1 MGP_CASTEiJ_G0016890.1 mouse_genomes_project 10 81789052 81793713 - Celf5 protein_coding retained_intron MGP_CASTEiJ_T0025812.1 MGP_CASTEiJ_G0016890.1 mouse_genomes_project 10 81789544 81796904 - Celf5 protein_coding retained_intron MGP_CASTEiJ_T0025813.1 MGP_CASTEiJ_G0016890.1 mouse_genomes_project 10 81789796 81807634 - Celf5 protein_coding retained_intron MGP_CASTEiJ_T0025814.1 MGP_CASTEiJ_G0016890.1 mouse_genomes_project 10 81791482 81796528 - MGP_CASTEiJ_P0025814 Celf5 protein_coding protein_coding MGP_CASTEiJ_T0012087.1 MGP_CASTEiJ_G0010250.1 mouse_genomes_project 10 81230515 81230772 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0026736.1 MGP_CASTEiJ_G0017147.1 mouse_genomes_project 10 130407924 130410158 + MGP_CASTEiJ_P0026736 Ndufa4l2 protein_coding protein_coding MGP_CASTEiJ_T0024331.1 MGP_CASTEiJ_G0016513.1 mouse_genomes_project 10 40112332 40117015 - Smpd2 protein_coding retained_intron MGP_CASTEiJ_T0024334.1 MGP_CASTEiJ_G0016513.1 mouse_genomes_project 10 40113861 40116806 - Smpd2 protein_coding retained_intron MGP_CASTEiJ_T0024335.1 MGP_CASTEiJ_G0016513.1 mouse_genomes_project 10 40113861 40117025 - MGP_CASTEiJ_P0024335 Smpd2 protein_coding protein_coding MGP_CASTEiJ_T0024336.1 MGP_CASTEiJ_G0016513.1 mouse_genomes_project 10 40113867 40117015 - Smpd2 protein_coding retained_intron MGP_CASTEiJ_T0024337.1 MGP_CASTEiJ_G0016513.1 mouse_genomes_project 10 40114233 40114930 - Smpd2 protein_coding retained_intron MGP_CASTEiJ_T0024338.1 MGP_CASTEiJ_G0016513.1 mouse_genomes_project 10 40114323 40116782 - MGP_CASTEiJ_P0024338 Smpd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024339.1 MGP_CASTEiJ_G0016513.1 mouse_genomes_project 10 40114715 40116364 - Smpd2 protein_coding retained_intron MGP_CASTEiJ_T0024340.1 MGP_CASTEiJ_G0016513.1 mouse_genomes_project 10 40115043 40117023 - Smpd2 protein_coding retained_intron MGP_CASTEiJ_T0024341.1 MGP_CASTEiJ_G0016513.1 mouse_genomes_project 10 40115701 40117054 - Smpd2 protein_coding retained_intron MGP_CASTEiJ_T0026029.1 MGP_CASTEiJ_G0016945.1 mouse_genomes_project 10 87134628 87192218 + MGP_CASTEiJ_P0026029 Nt5dc3 protein_coding protein_coding MGP_CASTEiJ_T0023922.1 MGP_CASTEiJ_G0016368.1 mouse_genomes_project 10 10929285 11171190 - MGP_CASTEiJ_P0023922 Aig1 protein_coding protein_coding MGP_CASTEiJ_T0023923.1 MGP_CASTEiJ_G0016368.1 mouse_genomes_project 10 10929900 11171032 - MGP_CASTEiJ_P0023923 Aig1 protein_coding protein_coding MGP_CASTEiJ_T0023924.1 MGP_CASTEiJ_G0016368.1 mouse_genomes_project 10 10934735 11171167 - MGP_CASTEiJ_P0023924 Aig1 protein_coding protein_coding MGP_CASTEiJ_T0023925.1 MGP_CASTEiJ_G0016368.1 mouse_genomes_project 10 10935880 11141350 - Aig1 protein_coding processed_transcript MGP_CASTEiJ_T0023926.1 MGP_CASTEiJ_G0016368.1 mouse_genomes_project 10 11094734 11159151 - Aig1 protein_coding retained_intron MGP_CASTEiJ_T0023927.1 MGP_CASTEiJ_G0016368.1 mouse_genomes_project 10 11122519 11171186 - Aig1 protein_coding retained_intron MGP_CASTEiJ_T0023928.1 MGP_CASTEiJ_G0016368.1 mouse_genomes_project 10 11125314 11171039 - Aig1 protein_coding processed_transcript MGP_CASTEiJ_T0010939.1 MGP_CASTEiJ_G0009127.1 mouse_genomes_project 10 40993667 40993912 + Gm23533 misc_RNA misc_RNA MGP_CASTEiJ_T0026412.1 MGP_CASTEiJ_G0017045.1 mouse_genomes_project 10 112496044 112564486 - MGP_CASTEiJ_P0026412 Zdhhc17 protein_coding protein_coding MGP_CASTEiJ_T0026413.1 MGP_CASTEiJ_G0017045.1 mouse_genomes_project 10 112516595 112564423 - MGP_CASTEiJ_P0026413 Zdhhc17 protein_coding protein_coding MGP_CASTEiJ_T0026461.1 MGP_CASTEiJ_G0017066.1 mouse_genomes_project 10 117513427 117525226 + MGP_CASTEiJ_P0026461 A930009A15Rik protein_coding protein_coding MGP_CASTEiJ_T0026296.1 MGP_CASTEiJ_G0017006.1 mouse_genomes_project 10 98597121 98603597 + MGP_CASTEiJ_P0026296 Kera protein_coding protein_coding MGP_CASTEiJ_T0024596.1 MGP_CASTEiJ_G0016593.1 mouse_genomes_project 10 58671347 58691909 + MGP_CASTEiJ_P0024596 Dnajb12 protein_coding protein_coding MGP_CASTEiJ_T0024597.1 MGP_CASTEiJ_G0016593.1 mouse_genomes_project 10 58671355 58690624 + MGP_CASTEiJ_P0024597 Dnajb12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024598.1 MGP_CASTEiJ_G0016593.1 mouse_genomes_project 10 58671366 58691903 + MGP_CASTEiJ_P0024598 Dnajb12 protein_coding protein_coding MGP_CASTEiJ_T0024599.1 MGP_CASTEiJ_G0016593.1 mouse_genomes_project 10 58671409 58689385 + MGP_CASTEiJ_P0024599 Dnajb12 protein_coding protein_coding MGP_CASTEiJ_T0024600.1 MGP_CASTEiJ_G0016593.1 mouse_genomes_project 10 58671417 58691131 + MGP_CASTEiJ_P0024600 Dnajb12 protein_coding protein_coding MGP_CASTEiJ_T0025393.1 MGP_CASTEiJ_G0016790.1 mouse_genomes_project 10 79924203 79940955 - MGP_CASTEiJ_P0025393 Prss57 protein_coding protein_coding MGP_CASTEiJ_T0025394.1 MGP_CASTEiJ_G0016790.1 mouse_genomes_project 10 79925646 79927332 - MGP_CASTEiJ_P0025394 Prss57 protein_coding protein_coding MGP_CASTEiJ_T0025395.1 MGP_CASTEiJ_G0016790.1 mouse_genomes_project 10 79925824 79927350 - MGP_CASTEiJ_P0025395 Prss57 protein_coding protein_coding MGP_CASTEiJ_T0024000.1 MGP_CASTEiJ_G0016390.1 mouse_genomes_project 10 17189601 17207825 + MGP_CASTEiJ_P0024000 protein_coding protein_coding MGP_CASTEiJ_T0026541.1 MGP_CASTEiJ_G0017093.1 mouse_genomes_project 10 121450718 121493097 - MGP_CASTEiJ_P0026541 Cand1 protein_coding protein_coding MGP_CASTEiJ_T0026542.1 MGP_CASTEiJ_G0017093.1 mouse_genomes_project 10 121454080 121492848 - MGP_CASTEiJ_P0026542 Cand1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026543.1 MGP_CASTEiJ_G0017093.1 mouse_genomes_project 10 121457761 121459647 - Cand1 protein_coding retained_intron MGP_CASTEiJ_T0026544.1 MGP_CASTEiJ_G0017093.1 mouse_genomes_project 10 121463217 121464048 - Cand1 protein_coding retained_intron MGP_CASTEiJ_T0026545.1 MGP_CASTEiJ_G0017093.1 mouse_genomes_project 10 121467915 121492345 - MGP_CASTEiJ_P0026545 Cand1 protein_coding protein_coding MGP_CASTEiJ_T0024174.1 MGP_CASTEiJ_G0016450.1 mouse_genomes_project 10 27289806 27308363 + MGP_CASTEiJ_P0024174 9330159F19Rik protein_coding protein_coding MGP_CASTEiJ_T0000794.1 MGP_CASTEiJ_G0000734.1 mouse_genomes_project 10 116195190 116195509 + TEC TEC MGP_CASTEiJ_T0100366.1 MGP_CASTEiJ_G0037279.1 mouse_genomes_project 10 38808797 38809011 + Rnu3a snoRNA snoRNA MGP_CASTEiJ_T0002924.1 MGP_CASTEiJ_G0002744.1 mouse_genomes_project 10 40408801 40415995 + BC048559 antisense antisense MGP_CASTEiJ_T0025934.1 MGP_CASTEiJ_G0016918.1 mouse_genomes_project 10 83673420 83716757 - MGP_CASTEiJ_P0025934 Aldh1l2 protein_coding protein_coding MGP_CASTEiJ_T0025935.1 MGP_CASTEiJ_G0016918.1 mouse_genomes_project 10 83676179 83678821 - Aldh1l2 protein_coding processed_transcript MGP_CASTEiJ_T0025936.1 MGP_CASTEiJ_G0016918.1 mouse_genomes_project 10 83677577 83680286 - Aldh1l2 protein_coding processed_transcript MGP_CASTEiJ_T0025937.1 MGP_CASTEiJ_G0016918.1 mouse_genomes_project 10 83677579 83716824 - Aldh1l2 protein_coding retained_intron MGP_CASTEiJ_T0025938.1 MGP_CASTEiJ_G0016918.1 mouse_genomes_project 10 83682498 83690667 - Aldh1l2 protein_coding processed_transcript MGP_CASTEiJ_T0025939.1 MGP_CASTEiJ_G0016918.1 mouse_genomes_project 10 83686663 83696289 - Aldh1l2 protein_coding processed_transcript MGP_CASTEiJ_T0026319.1 MGP_CASTEiJ_G0017019.1 mouse_genomes_project 10 101488592 101534906 - MGP_CASTEiJ_P0026319 Tmtc3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026320.1 MGP_CASTEiJ_G0017019.1 mouse_genomes_project 10 101490333 101534919 - MGP_CASTEiJ_P0026320 Tmtc3 protein_coding protein_coding MGP_CASTEiJ_T0026321.1 MGP_CASTEiJ_G0017019.1 mouse_genomes_project 10 101521703 101534911 - Tmtc3 protein_coding retained_intron MGP_CASTEiJ_T0026322.1 MGP_CASTEiJ_G0017019.1 mouse_genomes_project 10 101522892 101534839 - MGP_CASTEiJ_P0026322 Tmtc3 protein_coding protein_coding MGP_CASTEiJ_T0026323.1 MGP_CASTEiJ_G0017019.1 mouse_genomes_project 10 101526596 101534898 - MGP_CASTEiJ_P0026323 Tmtc3 protein_coding protein_coding MGP_CASTEiJ_T0025127.1 MGP_CASTEiJ_G0016707.1 mouse_genomes_project 10 76002163 76060801 - MGP_CASTEiJ_P0025127 Slc5a4b protein_coding protein_coding MGP_CASTEiJ_T0024001.1 MGP_CASTEiJ_G0016391.1 mouse_genomes_project 10 17267532 17311078 + MGP_CASTEiJ_P0024001 Il20ra protein_coding protein_coding MGP_CASTEiJ_T0026739.1 MGP_CASTEiJ_G0017150.1 mouse_genomes_project 10 130434783 130519728 - MGP_CASTEiJ_P0026739 Lrp1 protein_coding protein_coding MGP_CASTEiJ_T0026740.1 MGP_CASTEiJ_G0017150.1 mouse_genomes_project 10 130435224 130436223 - Lrp1 protein_coding retained_intron MGP_CASTEiJ_T0026741.1 MGP_CASTEiJ_G0017150.1 mouse_genomes_project 10 130435860 130436761 - Lrp1 protein_coding retained_intron MGP_CASTEiJ_T0026742.1 MGP_CASTEiJ_G0017150.1 mouse_genomes_project 10 130438816 130439828 - Lrp1 protein_coding retained_intron MGP_CASTEiJ_T0026743.1 MGP_CASTEiJ_G0017150.1 mouse_genomes_project 10 130442941 130446468 - MGP_CASTEiJ_P0026743 Lrp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026744.1 MGP_CASTEiJ_G0017150.1 mouse_genomes_project 10 130474785 130478378 - Lrp1 protein_coding retained_intron MGP_CASTEiJ_T0026745.1 MGP_CASTEiJ_G0017150.1 mouse_genomes_project 10 130478221 130479953 - MGP_CASTEiJ_P0026745 Lrp1 protein_coding protein_coding MGP_CASTEiJ_T0026746.1 MGP_CASTEiJ_G0017150.1 mouse_genomes_project 10 130486301 130519728 - Lrp1 protein_coding retained_intron MGP_CASTEiJ_T0026747.1 MGP_CASTEiJ_G0017150.1 mouse_genomes_project 10 130487827 130519549 - MGP_CASTEiJ_P0026747 Lrp1 protein_coding protein_coding MGP_CASTEiJ_T0026748.1 MGP_CASTEiJ_G0017150.1 mouse_genomes_project 10 130498519 130519501 - MGP_CASTEiJ_P0026748 Lrp1 protein_coding protein_coding MGP_CASTEiJ_T0002948.1 MGP_CASTEiJ_G0002764.1 mouse_genomes_project 10 76535114 76551477 - 4930483K19Rik antisense antisense MGP_CASTEiJ_T0024027.1 MGP_CASTEiJ_G0016398.1 mouse_genomes_project 10 17904284 17921779 + MGP_CASTEiJ_P0024027 Mtfr2 protein_coding protein_coding MGP_CASTEiJ_T0005985.1 MGP_CASTEiJ_G0005011.1 mouse_genomes_project 10 100366788 100492803 + B530045E10Rik lincRNA lincRNA MGP_CASTEiJ_T0005986.1 MGP_CASTEiJ_G0005011.1 mouse_genomes_project 10 100490278 100492803 + B530045E10Rik lincRNA lincRNA MGP_CASTEiJ_T0026654.1 MGP_CASTEiJ_G0017123.1 mouse_genomes_project 10 129869977 129880186 - MGP_CASTEiJ_P0026654 Mettl21b protein_coding protein_coding MGP_CASTEiJ_T0026768.1 MGP_CASTEiJ_G0017156.1 mouse_genomes_project 10 130656059 130663958 + MGP_CASTEiJ_P0026768 Zbtb39 protein_coding protein_coding MGP_CASTEiJ_T0026677.1 MGP_CASTEiJ_G0017132.1 mouse_genomes_project 10 130029674 130037840 - MGP_CASTEiJ_P0026677 Slc26a10 protein_coding protein_coding MGP_CASTEiJ_T0002921.1 MGP_CASTEiJ_G0002742.1 mouse_genomes_project 10 38908313 38909919 - Cdk19os antisense antisense MGP_CASTEiJ_T0002922.1 MGP_CASTEiJ_G0002742.1 mouse_genomes_project 10 38908897 38909919 - Cdk19os antisense antisense MGP_CASTEiJ_T0002952.1 MGP_CASTEiJ_G0002768.1 mouse_genomes_project 10 80583670 80584932 + Gm15124 antisense antisense MGP_CASTEiJ_T0024499.1 MGP_CASTEiJ_G0016563.1 mouse_genomes_project 10 52534705 52630548 - MGP_CASTEiJ_P0024499 Mcm9 protein_coding protein_coding MGP_CASTEiJ_T0024500.1 MGP_CASTEiJ_G0016563.1 mouse_genomes_project 10 52535692 52593569 - MGP_CASTEiJ_P0024500 Mcm9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0098446.1 MGP_CASTEiJ_G0035377.1 mouse_genomes_project 10 29477972 29478085 - n-R5s76 rRNA rRNA MGP_CASTEiJ_T0010946.1 MGP_CASTEiJ_G0009134.1 mouse_genomes_project 10 92692023 92692178 - Gm27544 misc_RNA misc_RNA MGP_CASTEiJ_T0023910.1 MGP_CASTEiJ_G0016365.1 mouse_genomes_project 10 10773175 10774711 + MGP_CASTEiJ_P0023910 Fuca2 protein_coding protein_coding MGP_CASTEiJ_T0023911.1 MGP_CASTEiJ_G0016365.1 mouse_genomes_project 10 10773179 10780213 + MGP_CASTEiJ_P0023911 Fuca2 protein_coding protein_coding MGP_CASTEiJ_T0023912.1 MGP_CASTEiJ_G0016365.1 mouse_genomes_project 10 10774534 10793335 + MGP_CASTEiJ_P0023912 Fuca2 protein_coding protein_coding MGP_CASTEiJ_T0023913.1 MGP_CASTEiJ_G0016365.1 mouse_genomes_project 10 10774534 10789877 + MGP_CASTEiJ_P0023913 Fuca2 protein_coding protein_coding MGP_CASTEiJ_T0023914.1 MGP_CASTEiJ_G0016365.1 mouse_genomes_project 10 10774617 10787427 + Fuca2 protein_coding retained_intron MGP_CASTEiJ_T0023915.1 MGP_CASTEiJ_G0016365.1 mouse_genomes_project 10 10780369 10789832 + Fuca2 protein_coding processed_transcript MGP_CASTEiJ_T0024815.1 MGP_CASTEiJ_G0016646.1 mouse_genomes_project 10 62382583 62472335 + MGP_CASTEiJ_P0024815 Herc4 protein_coding protein_coding MGP_CASTEiJ_T0024816.1 MGP_CASTEiJ_G0016646.1 mouse_genomes_project 10 62382614 62471942 + MGP_CASTEiJ_P0024816 Herc4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026124.1 MGP_CASTEiJ_G0016967.1 mouse_genomes_project 10 90071273 90125539 - MGP_CASTEiJ_P0026124 Slc17a8 protein_coding protein_coding MGP_CASTEiJ_T0009336.1 MGP_CASTEiJ_G0007524.1 mouse_genomes_project 10 44715973 44716088 - Gm27410 miRNA miRNA MGP_CASTEiJ_T0005959.1 MGP_CASTEiJ_G0004999.1 mouse_genomes_project 10 84828327 84831578 - Gm17249 lincRNA lincRNA MGP_CASTEiJ_T0002980.1 MGP_CASTEiJ_G0002789.1 mouse_genomes_project 10 112334627 112443937 - 1700020G17Rik antisense antisense MGP_CASTEiJ_T0002981.1 MGP_CASTEiJ_G0002789.1 mouse_genomes_project 10 112351125 112443967 - 1700020G17Rik antisense antisense MGP_CASTEiJ_T0002982.1 MGP_CASTEiJ_G0002789.1 mouse_genomes_project 10 112366299 112443999 - 1700020G17Rik antisense antisense MGP_CASTEiJ_T0002983.1 MGP_CASTEiJ_G0002789.1 mouse_genomes_project 10 112389573 112443986 - 1700020G17Rik antisense antisense MGP_CASTEiJ_T0023689.1 MGP_CASTEiJ_G0016316.1 mouse_genomes_project 10 520303 534917 + MGP_CASTEiJ_P0023689 Iyd protein_coding protein_coding MGP_CASTEiJ_T0023690.1 MGP_CASTEiJ_G0016316.1 mouse_genomes_project 10 520351 532152 + Iyd protein_coding retained_intron MGP_CASTEiJ_T0012097.1 MGP_CASTEiJ_G0010260.1 mouse_genomes_project 10 107497717 107498110 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0025440.1 MGP_CASTEiJ_G0016800.1 mouse_genomes_project 10 80076129 80076414 + MGP_CASTEiJ_P0025440 Gm26602 protein_coding protein_coding MGP_CASTEiJ_T0009377.1 MGP_CASTEiJ_G0007565.1 mouse_genomes_project 10 102867246 102867327 + Mir3059 miRNA miRNA MGP_CASTEiJ_T0024217.1 MGP_CASTEiJ_G0016472.1 mouse_genomes_project 10 32301659 32381755 + MGP_CASTEiJ_P0024217 Trappc3l protein_coding protein_coding MGP_CASTEiJ_T0100389.1 MGP_CASTEiJ_G0037302.1 mouse_genomes_project 10 102622371 102622503 + Gm26278 snoRNA snoRNA MGP_CASTEiJ_T0026564.1 MGP_CASTEiJ_G0017095.1 mouse_genomes_project 10 122387848 122419685 - MGP_CASTEiJ_P0026564 Helb protein_coding protein_coding MGP_CASTEiJ_T0026565.1 MGP_CASTEiJ_G0017095.1 mouse_genomes_project 10 122388960 122396550 - Helb protein_coding retained_intron MGP_CASTEiJ_T0026566.1 MGP_CASTEiJ_G0017095.1 mouse_genomes_project 10 122389023 122419562 - MGP_CASTEiJ_P0026566 Helb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025752.1 MGP_CASTEiJ_G0016877.1 mouse_genomes_project 10 81569253 81574307 + MGP_CASTEiJ_P0025752 Apba3 protein_coding protein_coding MGP_CASTEiJ_T0005954.1 MGP_CASTEiJ_G0004995.1 mouse_genomes_project 10 81942553 81945982 - Gm26896 lincRNA lincRNA MGP_CASTEiJ_T0024037.1 MGP_CASTEiJ_G0016401.1 mouse_genomes_project 10 18757283 18796839 - MGP_CASTEiJ_P0024037 Myb protein_coding protein_coding MGP_CASTEiJ_T0024038.1 MGP_CASTEiJ_G0016401.1 mouse_genomes_project 10 18757623 18796839 - MGP_CASTEiJ_P0024038 Myb protein_coding protein_coding MGP_CASTEiJ_T0024039.1 MGP_CASTEiJ_G0016401.1 mouse_genomes_project 10 18772428 18796784 - Myb protein_coding retained_intron MGP_CASTEiJ_T0025643.1 MGP_CASTEiJ_G0016844.1 mouse_genomes_project 10 80930362 80948475 - MGP_CASTEiJ_P0025643 Mob3a protein_coding protein_coding MGP_CASTEiJ_T0024892.1 MGP_CASTEiJ_G0016665.1 mouse_genomes_project 10 68781516 68799380 - MGP_CASTEiJ_P0024892 Cdk1 protein_coding protein_coding MGP_CASTEiJ_T0024893.1 MGP_CASTEiJ_G0016665.1 mouse_genomes_project 10 68783209 68799345 - MGP_CASTEiJ_P0024893 Cdk1 protein_coding protein_coding MGP_CASTEiJ_T0024894.1 MGP_CASTEiJ_G0016665.1 mouse_genomes_project 10 68785590 68789187 - Cdk1 protein_coding retained_intron MGP_CASTEiJ_T0024895.1 MGP_CASTEiJ_G0016665.1 mouse_genomes_project 10 68785721 68791909 - Cdk1 protein_coding retained_intron MGP_CASTEiJ_T0024896.1 MGP_CASTEiJ_G0016665.1 mouse_genomes_project 10 68785757 68797211 - MGP_CASTEiJ_P0024896 Cdk1 protein_coding protein_coding MGP_CASTEiJ_T0024897.1 MGP_CASTEiJ_G0016665.1 mouse_genomes_project 10 68785795 68791833 - Cdk1 protein_coding retained_intron MGP_CASTEiJ_T0024898.1 MGP_CASTEiJ_G0016665.1 mouse_genomes_project 10 68791403 68799352 - Cdk1 protein_coding retained_intron MGP_CASTEiJ_T0025430.1 MGP_CASTEiJ_G0016796.1 mouse_genomes_project 10 80047996 80049895 + MGP_CASTEiJ_P0025430 Elane protein_coding protein_coding MGP_CASTEiJ_T0100377.1 MGP_CASTEiJ_G0037290.1 mouse_genomes_project 10 65740594 65740724 + Gm22594 snoRNA snoRNA MGP_CASTEiJ_T0099160.1 MGP_CASTEiJ_G0036073.1 mouse_genomes_project 10 22732855 22732962 + Gm23410 snRNA snRNA MGP_CASTEiJ_T0010959.1 MGP_CASTEiJ_G0009147.1 mouse_genomes_project 10 127108435 127108694 + Gm23777 misc_RNA misc_RNA MGP_CASTEiJ_T0026505.1 MGP_CASTEiJ_G0017082.1 mouse_genomes_project 10 119375748 119375878 - MGP_CASTEiJ_P0026505 Gm10936 protein_coding protein_coding MGP_CASTEiJ_T0005981.1 MGP_CASTEiJ_G0005008.1 mouse_genomes_project 10 95467567 95484145 - Cep83os lincRNA lincRNA MGP_CASTEiJ_T0025725.1 MGP_CASTEiJ_G0016869.1 mouse_genomes_project 10 81471293 81477600 + MGP_CASTEiJ_P0025725 Eef2 protein_coding protein_coding MGP_CASTEiJ_T0026985.1 MGP_CASTEiJ_G0017267.1 mouse_genomes_project 10 133523817 133560963 + MGP_CASTEiJ_P0026985 Tespa1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024402.1 MGP_CASTEiJ_G0016527.1 mouse_genomes_project 10 41493936 41571500 + MGP_CASTEiJ_P0024402 Sec63 protein_coding protein_coding MGP_CASTEiJ_T0024403.1 MGP_CASTEiJ_G0016527.1 mouse_genomes_project 10 41494055 41569351 + Sec63 protein_coding retained_intron MGP_CASTEiJ_T0024404.1 MGP_CASTEiJ_G0016527.1 mouse_genomes_project 10 41494167 41569354 + MGP_CASTEiJ_P0024404 Sec63 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024405.1 MGP_CASTEiJ_G0016527.1 mouse_genomes_project 10 41494246 41549550 + Sec63 protein_coding retained_intron MGP_CASTEiJ_T0024406.1 MGP_CASTEiJ_G0016527.1 mouse_genomes_project 10 41554733 41568240 + Sec63 protein_coding processed_transcript MGP_CASTEiJ_T0024407.1 MGP_CASTEiJ_G0016527.1 mouse_genomes_project 10 41554733 41568243 + Sec63 protein_coding processed_transcript MGP_CASTEiJ_T0012061.1 MGP_CASTEiJ_G0010224.1 mouse_genomes_project 10 42093832 42094195 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024321.1 MGP_CASTEiJ_G0016512.1 mouse_genomes_project 10 40102856 40113722 + MGP_CASTEiJ_P0024321 Mical1 protein_coding protein_coding MGP_CASTEiJ_T0024322.1 MGP_CASTEiJ_G0016512.1 mouse_genomes_project 10 40102856 40113720 + MGP_CASTEiJ_P0024322 Mical1 protein_coding protein_coding MGP_CASTEiJ_T0024323.1 MGP_CASTEiJ_G0016512.1 mouse_genomes_project 10 40102878 40111915 + Mical1 protein_coding retained_intron MGP_CASTEiJ_T0024324.1 MGP_CASTEiJ_G0016512.1 mouse_genomes_project 10 40102910 40113722 + MGP_CASTEiJ_P0024324 Mical1 protein_coding protein_coding MGP_CASTEiJ_T0024325.1 MGP_CASTEiJ_G0016512.1 mouse_genomes_project 10 40102919 40113722 + MGP_CASTEiJ_P0024325 Mical1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024326.1 MGP_CASTEiJ_G0016512.1 mouse_genomes_project 10 40103620 40104727 + MGP_CASTEiJ_P0024326 Mical1 protein_coding protein_coding MGP_CASTEiJ_T0024327.1 MGP_CASTEiJ_G0016512.1 mouse_genomes_project 10 40105017 40107714 + Mical1 protein_coding retained_intron MGP_CASTEiJ_T0024328.1 MGP_CASTEiJ_G0016512.1 mouse_genomes_project 10 40106527 40107707 + Mical1 protein_coding retained_intron MGP_CASTEiJ_T0024329.1 MGP_CASTEiJ_G0016512.1 mouse_genomes_project 10 40108249 40109352 + Mical1 protein_coding retained_intron MGP_CASTEiJ_T0024330.1 MGP_CASTEiJ_G0016512.1 mouse_genomes_project 10 40110757 40111761 + Mical1 protein_coding retained_intron MGP_CASTEiJ_T0024332.1 MGP_CASTEiJ_G0016512.1 mouse_genomes_project 10 40112800 40113410 + Mical1 protein_coding retained_intron MGP_CASTEiJ_T0024333.1 MGP_CASTEiJ_G0016512.1 mouse_genomes_project 10 40113061 40113720 + Mical1 protein_coding retained_intron MGP_CASTEiJ_T0003001.1 MGP_CASTEiJ_G0002802.1 mouse_genomes_project 10 130573876 130575522 + Gm16229 antisense antisense MGP_CASTEiJ_T0025151.1 MGP_CASTEiJ_G0016716.1 mouse_genomes_project 10 76519319 76523306 + Lss protein_coding processed_transcript MGP_CASTEiJ_T0025152.1 MGP_CASTEiJ_G0016716.1 mouse_genomes_project 10 76519338 76538128 + Lss protein_coding retained_intron MGP_CASTEiJ_T0025153.1 MGP_CASTEiJ_G0016716.1 mouse_genomes_project 10 76519338 76544728 + MGP_CASTEiJ_P0025153 Lss protein_coding protein_coding MGP_CASTEiJ_T0025154.1 MGP_CASTEiJ_G0016716.1 mouse_genomes_project 10 76519343 76546411 + Lss protein_coding retained_intron MGP_CASTEiJ_T0025155.1 MGP_CASTEiJ_G0016716.1 mouse_genomes_project 10 76519427 76523461 + Lss protein_coding retained_intron MGP_CASTEiJ_T0025156.1 MGP_CASTEiJ_G0016716.1 mouse_genomes_project 10 76531112 76531976 + MGP_CASTEiJ_P0025156 Lss protein_coding protein_coding MGP_CASTEiJ_T0025157.1 MGP_CASTEiJ_G0016716.1 mouse_genomes_project 10 76540462 76545865 + Lss protein_coding retained_intron MGP_CASTEiJ_T0025158.1 MGP_CASTEiJ_G0016716.1 mouse_genomes_project 10 76541518 76542481 + Lss protein_coding retained_intron MGP_CASTEiJ_T0025246.1 MGP_CASTEiJ_G0016741.1 mouse_genomes_project 10 77940194 77943003 - MGP_CASTEiJ_P0025246 Krtap10-4 protein_coding protein_coding MGP_CASTEiJ_T0025040.1 MGP_CASTEiJ_G0016681.1 mouse_genomes_project 10 74892769 74906230 + Rab36 protein_coding retained_intron MGP_CASTEiJ_T0025041.1 MGP_CASTEiJ_G0016681.1 mouse_genomes_project 10 74892777 74912177 + MGP_CASTEiJ_P0025041 Rab36 protein_coding protein_coding MGP_CASTEiJ_T0025042.1 MGP_CASTEiJ_G0016681.1 mouse_genomes_project 10 74892795 74911533 + MGP_CASTEiJ_P0025042 Rab36 protein_coding protein_coding MGP_CASTEiJ_T0025043.1 MGP_CASTEiJ_G0016681.1 mouse_genomes_project 10 74892937 74905013 + Rab36 protein_coding retained_intron MGP_CASTEiJ_T0025044.1 MGP_CASTEiJ_G0016681.1 mouse_genomes_project 10 74892984 74903535 + Rab36 protein_coding retained_intron MGP_CASTEiJ_T0025045.1 MGP_CASTEiJ_G0016681.1 mouse_genomes_project 10 74893033 74908142 + MGP_CASTEiJ_P0025045 Rab36 protein_coding protein_coding MGP_CASTEiJ_T0025046.1 MGP_CASTEiJ_G0016681.1 mouse_genomes_project 10 74893554 74911491 + MGP_CASTEiJ_P0025046 Rab36 protein_coding protein_coding MGP_CASTEiJ_T0025047.1 MGP_CASTEiJ_G0016681.1 mouse_genomes_project 10 74893939 74908137 + Rab36 protein_coding retained_intron MGP_CASTEiJ_T0025506.1 MGP_CASTEiJ_G0016814.1 mouse_genomes_project 10 80327710 80333307 + Atp5d protein_coding processed_transcript MGP_CASTEiJ_T0025507.1 MGP_CASTEiJ_G0016814.1 mouse_genomes_project 10 80328632 80337402 + MGP_CASTEiJ_P0025507 Atp5d protein_coding unknown_likely_coding MGP_CASTEiJ_T0025508.1 MGP_CASTEiJ_G0016814.1 mouse_genomes_project 10 80330560 80337393 + MGP_CASTEiJ_P0025508 Atp5d protein_coding protein_coding MGP_CASTEiJ_T0025509.1 MGP_CASTEiJ_G0016814.1 mouse_genomes_project 10 80333221 80337398 + MGP_CASTEiJ_P0025509 Atp5d protein_coding protein_coding MGP_CASTEiJ_T0025510.1 MGP_CASTEiJ_G0016814.1 mouse_genomes_project 10 80333276 80337392 + MGP_CASTEiJ_P0025510 Atp5d protein_coding protein_coding MGP_CASTEiJ_T0025336.1 MGP_CASTEiJ_G0016772.1 mouse_genomes_project 10 79188838 79217004 - MGP_CASTEiJ_P0025336 2610008E11Rik protein_coding protein_coding MGP_CASTEiJ_T0026935.1 MGP_CASTEiJ_G0017226.1 mouse_genomes_project 10 132351083 132543673 + MGP_CASTEiJ_P0026935 protein_coding protein_coding MGP_CASTEiJ_T0024871.1 MGP_CASTEiJ_G0016660.1 mouse_genomes_project 10 67463755 67512189 - MGP_CASTEiJ_P0024871 Arid5b protein_coding unknown_likely_coding MGP_CASTEiJ_T0024872.1 MGP_CASTEiJ_G0016660.1 mouse_genomes_project 10 67464673 67583745 - MGP_CASTEiJ_P0024872 Arid5b protein_coding unknown_likely_coding MGP_CASTEiJ_T0024873.1 MGP_CASTEiJ_G0016660.1 mouse_genomes_project 10 67466829 67665774 - MGP_CASTEiJ_P0024873 Arid5b protein_coding protein_coding MGP_CASTEiJ_T0024859.1 MGP_CASTEiJ_G0016657.1 mouse_genomes_project 10 66910654 66912874 + MGP_CASTEiJ_P0024859 Gm10797 protein_coding protein_coding MGP_CASTEiJ_T0099184.1 MGP_CASTEiJ_G0036097.1 mouse_genomes_project 10 80074490 80074597 + Gm24019 snRNA snRNA MGP_CASTEiJ_T0025271.1 MGP_CASTEiJ_G0016747.1 mouse_genomes_project 10 78155383 78173624 - MGP_CASTEiJ_P0025271 Aire protein_coding protein_coding MGP_CASTEiJ_T0025272.1 MGP_CASTEiJ_G0016747.1 mouse_genomes_project 10 78155383 78173624 - MGP_CASTEiJ_P0025272 Aire protein_coding protein_coding MGP_CASTEiJ_T0025273.1 MGP_CASTEiJ_G0016747.1 mouse_genomes_project 10 78155383 78173624 - MGP_CASTEiJ_P0025273 Aire protein_coding protein_coding MGP_CASTEiJ_T0025274.1 MGP_CASTEiJ_G0016747.1 mouse_genomes_project 10 78155384 78166201 - Aire protein_coding retained_intron MGP_CASTEiJ_T0025275.1 MGP_CASTEiJ_G0016747.1 mouse_genomes_project 10 78155384 78173654 - MGP_CASTEiJ_P0025275 Aire protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025276.1 MGP_CASTEiJ_G0016747.1 mouse_genomes_project 10 78155392 78173624 - MGP_CASTEiJ_P0025276 Aire protein_coding protein_coding MGP_CASTEiJ_T0025277.1 MGP_CASTEiJ_G0016747.1 mouse_genomes_project 10 78155392 78173624 - MGP_CASTEiJ_P0025277 Aire protein_coding protein_coding MGP_CASTEiJ_T0025278.1 MGP_CASTEiJ_G0016747.1 mouse_genomes_project 10 78155392 78173624 - MGP_CASTEiJ_P0025278 Aire protein_coding protein_coding MGP_CASTEiJ_T0025279.1 MGP_CASTEiJ_G0016747.1 mouse_genomes_project 10 78155392 78173624 - MGP_CASTEiJ_P0025279 Aire protein_coding protein_coding MGP_CASTEiJ_T0025280.1 MGP_CASTEiJ_G0016747.1 mouse_genomes_project 10 78155392 78173624 - MGP_CASTEiJ_P0025280 Aire protein_coding protein_coding MGP_CASTEiJ_T0025281.1 MGP_CASTEiJ_G0016747.1 mouse_genomes_project 10 78155392 78173624 - MGP_CASTEiJ_P0025281 Aire protein_coding protein_coding MGP_CASTEiJ_T0025282.1 MGP_CASTEiJ_G0016747.1 mouse_genomes_project 10 78155392 78173624 - MGP_CASTEiJ_P0025282 Aire protein_coding protein_coding MGP_CASTEiJ_T0025283.1 MGP_CASTEiJ_G0016747.1 mouse_genomes_project 10 78155432 78173624 - MGP_CASTEiJ_P0025283 Aire protein_coding protein_coding MGP_CASTEiJ_T0025284.1 MGP_CASTEiJ_G0016747.1 mouse_genomes_project 10 78155432 78173616 - MGP_CASTEiJ_P0025284 Aire protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025285.1 MGP_CASTEiJ_G0016747.1 mouse_genomes_project 10 78157242 78166203 - Aire protein_coding retained_intron MGP_CASTEiJ_T0025286.1 MGP_CASTEiJ_G0016747.1 mouse_genomes_project 10 78161637 78171759 - Aire protein_coding retained_intron MGP_CASTEiJ_T0016402.1 MGP_CASTEiJ_G0014456.1 mouse_genomes_project 10 123246879 123252541 + Gm15910 processed_transcript processed_transcript MGP_CASTEiJ_T0023802.1 MGP_CASTEiJ_G0016339.1 mouse_genomes_project 10 4771758 4784940 + MGP_CASTEiJ_P0023802 Nup43 protein_coding protein_coding MGP_CASTEiJ_T0023803.1 MGP_CASTEiJ_G0016339.1 mouse_genomes_project 10 4771769 4772547 + Nup43 protein_coding retained_intron MGP_CASTEiJ_T0023804.1 MGP_CASTEiJ_G0016339.1 mouse_genomes_project 10 4771795 4781260 + Nup43 protein_coding retained_intron MGP_CASTEiJ_T0023805.1 MGP_CASTEiJ_G0016339.1 mouse_genomes_project 10 4774797 4780434 + Nup43 protein_coding retained_intron MGP_CASTEiJ_T0012046.1 MGP_CASTEiJ_G0010209.1 mouse_genomes_project 10 18215134 18219077 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002978.1 MGP_CASTEiJ_G0002787.1 mouse_genomes_project 10 95348712 95397313 - Tmcc3os antisense antisense MGP_CASTEiJ_T0026868.1 MGP_CASTEiJ_G0017193.1 mouse_genomes_project 10 131574802 131580619 - MGP_CASTEiJ_P0026868 Zc3h10 protein_coding protein_coding MGP_CASTEiJ_T0026869.1 MGP_CASTEiJ_G0017193.1 mouse_genomes_project 10 131577640 131580588 - Zc3h10 protein_coding processed_transcript MGP_CASTEiJ_T0026870.1 MGP_CASTEiJ_G0017193.1 mouse_genomes_project 10 131577922 131580484 - Zc3h10 protein_coding processed_transcript MGP_CASTEiJ_T0026871.1 MGP_CASTEiJ_G0017193.1 mouse_genomes_project 10 131578180 131580570 - Zc3h10 protein_coding processed_transcript MGP_CASTEiJ_T0100352.1 MGP_CASTEiJ_G0037265.1 mouse_genomes_project 10 11557540 11557651 + Gm24343 snoRNA snoRNA MGP_CASTEiJ_T0005923.1 MGP_CASTEiJ_G0004970.1 mouse_genomes_project 10 22258495 22263505 + Gm15271 lincRNA lincRNA MGP_CASTEiJ_T0024539.1 MGP_CASTEiJ_G0016574.1 mouse_genomes_project 10 56827893 56831463 + MGP_CASTEiJ_P0024539 Fabp7 protein_coding protein_coding MGP_CASTEiJ_T0024540.1 MGP_CASTEiJ_G0016574.1 mouse_genomes_project 10 56827935 56829825 + MGP_CASTEiJ_P0024540 Fabp7 protein_coding protein_coding MGP_CASTEiJ_T0009399.1 MGP_CASTEiJ_G0007587.1 mouse_genomes_project 10 131543072 131543135 - Mir6916 miRNA miRNA MGP_CASTEiJ_T0009326.1 MGP_CASTEiJ_G0007514.1 mouse_genomes_project 10 17850161 17850269 - Mir6413 miRNA miRNA MGP_CASTEiJ_T0026292.1 MGP_CASTEiJ_G0017003.1 mouse_genomes_project 10 97545298 97552729 + MGP_CASTEiJ_P0026292 protein_coding protein_coding MGP_CASTEiJ_T0002995.1 MGP_CASTEiJ_G0002797.1 mouse_genomes_project 10 122107495 122137775 - Grip1os1 antisense antisense MGP_CASTEiJ_T0002996.1 MGP_CASTEiJ_G0002797.1 mouse_genomes_project 10 122132442 122137662 - Grip1os1 antisense antisense MGP_CASTEiJ_T0009370.1 MGP_CASTEiJ_G0007558.1 mouse_genomes_project 10 93247824 93247918 + Gm22582 miRNA miRNA MGP_CASTEiJ_T0024683.1 MGP_CASTEiJ_G0016613.1 mouse_genomes_project 10 60439538 60441231 - MGP_CASTEiJ_P0024683 D830039M14Rik protein_coding protein_coding MGP_CASTEiJ_T0026192.1 MGP_CASTEiJ_G0016976.1 mouse_genomes_project 10 93349262 93389622 - MGP_CASTEiJ_P0026192 Nedd1 protein_coding protein_coding MGP_CASTEiJ_T0000779.1 MGP_CASTEiJ_G0000720.1 mouse_genomes_project 10 62225928 62226270 + TEC TEC MGP_CASTEiJ_T0002908.1 MGP_CASTEiJ_G0002733.1 mouse_genomes_project 10 11996288 12000329 + Gm16234 antisense antisense MGP_CASTEiJ_T0002915.1 MGP_CASTEiJ_G0002739.1 mouse_genomes_project 10 31846334 31882357 + antisense antisense MGP_CASTEiJ_T0024185.1 MGP_CASTEiJ_G0016455.1 mouse_genomes_project 10 28668506 28733115 - MGP_CASTEiJ_P0024185 Trmt11 protein_coding protein_coding MGP_CASTEiJ_T0024610.1 MGP_CASTEiJ_G0016596.1 mouse_genomes_project 10 58813844 58920404 + MGP_CASTEiJ_P0024610 Ascc1 protein_coding protein_coding MGP_CASTEiJ_T0024611.1 MGP_CASTEiJ_G0016596.1 mouse_genomes_project 10 58814366 58920404 + MGP_CASTEiJ_P0024611 Ascc1 protein_coding protein_coding MGP_CASTEiJ_T0025462.1 MGP_CASTEiJ_G0016808.1 mouse_genomes_project 10 80195939 80211939 + MGP_CASTEiJ_P0025462 Hmha1 protein_coding protein_coding MGP_CASTEiJ_T0025463.1 MGP_CASTEiJ_G0016808.1 mouse_genomes_project 10 80196025 80211936 + Hmha1 protein_coding retained_intron MGP_CASTEiJ_T0025464.1 MGP_CASTEiJ_G0016808.1 mouse_genomes_project 10 80196202 80211936 + MGP_CASTEiJ_P0025464 Hmha1 protein_coding protein_coding MGP_CASTEiJ_T0025465.1 MGP_CASTEiJ_G0016808.1 mouse_genomes_project 10 80198694 80211935 + MGP_CASTEiJ_P0025465 Hmha1 protein_coding protein_coding MGP_CASTEiJ_T0025466.1 MGP_CASTEiJ_G0016808.1 mouse_genomes_project 10 80200788 80211929 + Hmha1 protein_coding retained_intron MGP_CASTEiJ_T0024616.1 MGP_CASTEiJ_G0016598.1 mouse_genomes_project 10 59024581 59061511 - MGP_CASTEiJ_P0024616 Chst3 protein_coding protein_coding MGP_CASTEiJ_T0024617.1 MGP_CASTEiJ_G0016598.1 mouse_genomes_project 10 59024583 59031794 - MGP_CASTEiJ_P0024617 Chst3 protein_coding protein_coding MGP_CASTEiJ_T0024618.1 MGP_CASTEiJ_G0016598.1 mouse_genomes_project 10 59028697 59037277 - MGP_CASTEiJ_P0024618 Chst3 protein_coding protein_coding MGP_CASTEiJ_T0025239.1 MGP_CASTEiJ_G0016734.1 mouse_genomes_project 10 77788534 77788897 + MGP_CASTEiJ_P0025239 Gm10272 protein_coding protein_coding MGP_CASTEiJ_T0025048.1 MGP_CASTEiJ_G0016682.1 mouse_genomes_project 10 74920239 75051744 + MGP_CASTEiJ_P0025048 Bcr protein_coding protein_coding MGP_CASTEiJ_T0025049.1 MGP_CASTEiJ_G0016682.1 mouse_genomes_project 10 74920369 75051750 + MGP_CASTEiJ_P0025049 Bcr protein_coding unknown_likely_coding MGP_CASTEiJ_T0023999.1 MGP_CASTEiJ_G0016389.1 mouse_genomes_project 10 17165654 17177964 + MGP_CASTEiJ_P0023999 Il22ra2 protein_coding protein_coding MGP_CASTEiJ_T0026925.1 MGP_CASTEiJ_G0017220.1 mouse_genomes_project 10 132181819 132182758 - MGP_CASTEiJ_P0026925 Olfr768 protein_coding protein_coding MGP_CASTEiJ_T0026465.1 MGP_CASTEiJ_G0017068.1 mouse_genomes_project 10 118002701 118278923 + MGP_CASTEiJ_P0026465 Ptprr protein_coding protein_coding MGP_CASTEiJ_T0026466.1 MGP_CASTEiJ_G0017068.1 mouse_genomes_project 10 118002775 118101344 + Ptprr protein_coding processed_transcript MGP_CASTEiJ_T0026468.1 MGP_CASTEiJ_G0017068.1 mouse_genomes_project 10 118134879 118278921 + MGP_CASTEiJ_P0026468 Ptprr protein_coding protein_coding MGP_CASTEiJ_T0026469.1 MGP_CASTEiJ_G0017068.1 mouse_genomes_project 10 118162435 118278923 + MGP_CASTEiJ_P0026469 Ptprr protein_coding protein_coding MGP_CASTEiJ_T0026470.1 MGP_CASTEiJ_G0017068.1 mouse_genomes_project 10 118162528 118278923 + MGP_CASTEiJ_P0026470 Ptprr protein_coding protein_coding MGP_CASTEiJ_T0026471.1 MGP_CASTEiJ_G0017068.1 mouse_genomes_project 10 118162588 118278336 + MGP_CASTEiJ_P0026471 Ptprr protein_coding protein_coding MGP_CASTEiJ_T0026472.1 MGP_CASTEiJ_G0017068.1 mouse_genomes_project 10 118188556 118234514 + Ptprr protein_coding processed_transcript MGP_CASTEiJ_T0026894.1 MGP_CASTEiJ_G0017204.1 mouse_genomes_project 10 131810667 131832404 + MGP_CASTEiJ_P0026894 Pym1 protein_coding protein_coding MGP_CASTEiJ_T0026895.1 MGP_CASTEiJ_G0017204.1 mouse_genomes_project 10 131811243 131832404 + MGP_CASTEiJ_P0026895 Pym1 protein_coding protein_coding MGP_CASTEiJ_T0024199.1 MGP_CASTEiJ_G0016461.1 mouse_genomes_project 10 29493699 29594559 - MGP_CASTEiJ_P0024199 Tpd52l1 protein_coding protein_coding MGP_CASTEiJ_T0024200.1 MGP_CASTEiJ_G0016461.1 mouse_genomes_project 10 29494160 29594586 - MGP_CASTEiJ_P0024200 Tpd52l1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012083.1 MGP_CASTEiJ_G0010246.1 mouse_genomes_project 10 73509033 73509582 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023825.1 MGP_CASTEiJ_G0016345.1 mouse_genomes_project 10 5036400 5088284 - MGP_CASTEiJ_P0023825 Tab2 protein_coding protein_coding MGP_CASTEiJ_T0023826.1 MGP_CASTEiJ_G0016345.1 mouse_genomes_project 10 5038057 5041174 - Tab2 protein_coding retained_intron MGP_CASTEiJ_T0023827.1 MGP_CASTEiJ_G0016345.1 mouse_genomes_project 10 5038167 5042160 - Tab2 protein_coding retained_intron MGP_CASTEiJ_T0023828.1 MGP_CASTEiJ_G0016345.1 mouse_genomes_project 10 5042165 5064170 - MGP_CASTEiJ_P0023828 Tab2 protein_coding protein_coding MGP_CASTEiJ_T0023829.1 MGP_CASTEiJ_G0016345.1 mouse_genomes_project 10 5050007 5055198 - MGP_CASTEiJ_P0023829 Tab2 protein_coding protein_coding MGP_CASTEiJ_T0002926.1 MGP_CASTEiJ_G0002746.1 mouse_genomes_project 10 41912966 41914359 + Gm29245 antisense antisense MGP_CASTEiJ_T0024094.1 MGP_CASTEiJ_G0016429.1 mouse_genomes_project 10 21938748 21981869 + MGP_CASTEiJ_P0024094 Stx7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024218.1 MGP_CASTEiJ_G0016473.1 mouse_genomes_project 10 32301891 32307415 - MGP_CASTEiJ_P0024218 Fam26d protein_coding protein_coding MGP_CASTEiJ_T0016366.1 MGP_CASTEiJ_G0014446.1 mouse_genomes_project 10 22370916 22371800 - Gm15270 processed_transcript processed_transcript MGP_CASTEiJ_T0016367.1 MGP_CASTEiJ_G0014446.1 mouse_genomes_project 10 22370922 22424199 - Gm15270 processed_transcript processed_transcript MGP_CASTEiJ_T0016368.1 MGP_CASTEiJ_G0014446.1 mouse_genomes_project 10 22398416 22420969 - Gm15270 processed_transcript processed_transcript MGP_CASTEiJ_T0016369.1 MGP_CASTEiJ_G0014446.1 mouse_genomes_project 10 22423592 22425490 - Gm15270 processed_transcript processed_transcript MGP_CASTEiJ_T0000788.1 MGP_CASTEiJ_G0000728.1 mouse_genomes_project 10 101855082 101855853 - TEC TEC MGP_CASTEiJ_T0025322.1 MGP_CASTEiJ_G0016764.1 mouse_genomes_project 10 79005363 79006326 - MGP_CASTEiJ_P0025322 Olfr1356 protein_coding protein_coding MGP_CASTEiJ_T0025323.1 MGP_CASTEiJ_G0016764.1 mouse_genomes_project 10 79005363 79010622 - MGP_CASTEiJ_P0025323 Olfr1356 protein_coding protein_coding MGP_CASTEiJ_T0026589.1 MGP_CASTEiJ_G0017102.1 mouse_genomes_project 10 123445879 123517264 + MGP_CASTEiJ_P0026589 Wif1 protein_coding protein_coding MGP_CASTEiJ_T0026590.1 MGP_CASTEiJ_G0017102.1 mouse_genomes_project 10 123445943 123517260 + MGP_CASTEiJ_P0026590 Wif1 protein_coding protein_coding MGP_CASTEiJ_T0026591.1 MGP_CASTEiJ_G0017102.1 mouse_genomes_project 10 123499501 123517251 + Wif1 protein_coding retained_intron MGP_CASTEiJ_T0026097.1 MGP_CASTEiJ_G0016960.1 mouse_genomes_project 10 89113549 89123779 - MGP_CASTEiJ_P0026097 Spic protein_coding protein_coding MGP_CASTEiJ_T0026098.1 MGP_CASTEiJ_G0016960.1 mouse_genomes_project 10 89115080 89123779 - MGP_CASTEiJ_P0026098 Spic protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026099.1 MGP_CASTEiJ_G0016960.1 mouse_genomes_project 10 89115703 89125575 - MGP_CASTEiJ_P0026099 Spic protein_coding protein_coding MGP_CASTEiJ_T0026100.1 MGP_CASTEiJ_G0016960.1 mouse_genomes_project 10 89117868 89123779 - Spic protein_coding retained_intron MGP_CASTEiJ_T0026453.1 MGP_CASTEiJ_G0017065.1 mouse_genomes_project 10 117386384 117530282 - MGP_CASTEiJ_P0026453 Lgr5 protein_coding protein_coding MGP_CASTEiJ_T0026454.1 MGP_CASTEiJ_G0017065.1 mouse_genomes_project 10 117388088 117529995 - MGP_CASTEiJ_P0026454 Lgr5 protein_coding protein_coding MGP_CASTEiJ_T0026455.1 MGP_CASTEiJ_G0017065.1 mouse_genomes_project 10 117388088 117529995 - MGP_CASTEiJ_P0026455 Lgr5 protein_coding protein_coding MGP_CASTEiJ_T0026456.1 MGP_CASTEiJ_G0017065.1 mouse_genomes_project 10 117392725 117395069 - Lgr5 protein_coding retained_intron MGP_CASTEiJ_T0026457.1 MGP_CASTEiJ_G0017065.1 mouse_genomes_project 10 117393922 117399053 - Lgr5 protein_coding retained_intron MGP_CASTEiJ_T0026458.1 MGP_CASTEiJ_G0017065.1 mouse_genomes_project 10 117398637 117530261 - Lgr5 protein_coding retained_intron MGP_CASTEiJ_T0026459.1 MGP_CASTEiJ_G0017065.1 mouse_genomes_project 10 117409228 117530261 - Lgr5 protein_coding retained_intron MGP_CASTEiJ_T0026460.1 MGP_CASTEiJ_G0017065.1 mouse_genomes_project 10 117466835 117530245 - Lgr5 protein_coding processed_transcript MGP_CASTEiJ_T0023748.1 MGP_CASTEiJ_G0016332.1 mouse_genomes_project 10 3853516 3869707 - MGP_CASTEiJ_P0023748 Gm10945 protein_coding protein_coding MGP_CASTEiJ_T0023992.1 MGP_CASTEiJ_G0016387.1 mouse_genomes_project 10 16886743 16888806 + MGP_CASTEiJ_P0023992 Olig3 protein_coding protein_coding MGP_CASTEiJ_T0025988.1 MGP_CASTEiJ_G0016934.1 mouse_genomes_project 10 86150941 86168138 + MGP_CASTEiJ_P0025988 Pwp1 protein_coding protein_coding MGP_CASTEiJ_T0025989.1 MGP_CASTEiJ_G0016934.1 mouse_genomes_project 10 86150994 86163732 + Pwp1 protein_coding retained_intron MGP_CASTEiJ_T0025990.1 MGP_CASTEiJ_G0016934.1 mouse_genomes_project 10 86151016 86161214 + MGP_CASTEiJ_P0025990 Pwp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025991.1 MGP_CASTEiJ_G0016934.1 mouse_genomes_project 10 86155364 86163523 + Pwp1 protein_coding retained_intron MGP_CASTEiJ_T0025557.1 MGP_CASTEiJ_G0016824.1 mouse_genomes_project 10 80499274 80523057 + MGP_CASTEiJ_P0025557 Apc2 protein_coding protein_coding MGP_CASTEiJ_T0025558.1 MGP_CASTEiJ_G0016824.1 mouse_genomes_project 10 80502357 80505631 + MGP_CASTEiJ_P0025558 Apc2 protein_coding protein_coding MGP_CASTEiJ_T0025559.1 MGP_CASTEiJ_G0016824.1 mouse_genomes_project 10 80504108 80506625 + Apc2 protein_coding retained_intron MGP_CASTEiJ_T0025560.1 MGP_CASTEiJ_G0016824.1 mouse_genomes_project 10 80504295 80505617 + MGP_CASTEiJ_P0025560 Apc2 protein_coding protein_coding MGP_CASTEiJ_T0025561.1 MGP_CASTEiJ_G0016824.1 mouse_genomes_project 10 80504296 80505676 + MGP_CASTEiJ_P0025561 Apc2 protein_coding protein_coding MGP_CASTEiJ_T0025562.1 MGP_CASTEiJ_G0016824.1 mouse_genomes_project 10 80505089 80523050 + MGP_CASTEiJ_P0025562 Apc2 protein_coding protein_coding MGP_CASTEiJ_T0026610.1 MGP_CASTEiJ_G0017110.1 mouse_genomes_project 10 124266034 124553482 - MGP_CASTEiJ_P0026610 Srgap1 protein_coding protein_coding MGP_CASTEiJ_T0026611.1 MGP_CASTEiJ_G0017110.1 mouse_genomes_project 10 124266034 124553475 - MGP_CASTEiJ_P0026611 Srgap1 protein_coding protein_coding MGP_CASTEiJ_T0026612.1 MGP_CASTEiJ_G0017110.1 mouse_genomes_project 10 124270199 124292154 - Srgap1 protein_coding processed_transcript MGP_CASTEiJ_T0026613.1 MGP_CASTEiJ_G0017110.1 mouse_genomes_project 10 124291690 124307206 - MGP_CASTEiJ_P0026613 Srgap1 protein_coding protein_coding MGP_CASTEiJ_T0026614.1 MGP_CASTEiJ_G0017110.1 mouse_genomes_project 10 124381970 124553482 - Srgap1 protein_coding retained_intron MGP_CASTEiJ_T0023854.1 MGP_CASTEiJ_G0016354.1 mouse_genomes_project 10 7886597 8289687 - MGP_CASTEiJ_P0023854 Grm1 protein_coding protein_coding MGP_CASTEiJ_T0023855.1 MGP_CASTEiJ_G0016354.1 mouse_genomes_project 10 7889126 8289636 - MGP_CASTEiJ_P0023855 Grm1 protein_coding protein_coding MGP_CASTEiJ_T0023856.1 MGP_CASTEiJ_G0016354.1 mouse_genomes_project 10 7889326 8288303 - MGP_CASTEiJ_P0023856 Grm1 protein_coding protein_coding MGP_CASTEiJ_T0023857.1 MGP_CASTEiJ_G0016354.1 mouse_genomes_project 10 7889969 7921746 - Grm1 protein_coding processed_transcript MGP_CASTEiJ_T0023858.1 MGP_CASTEiJ_G0016354.1 mouse_genomes_project 10 7951862 7954524 - Grm1 protein_coding processed_transcript MGP_CASTEiJ_T0023859.1 MGP_CASTEiJ_G0016354.1 mouse_genomes_project 10 8287835 8289581 - Grm1 protein_coding processed_transcript MGP_CASTEiJ_T0002973.1 MGP_CASTEiJ_G0002784.1 mouse_genomes_project 10 88210769 88212912 - Igf1os antisense antisense MGP_CASTEiJ_T0002974.1 MGP_CASTEiJ_G0002784.1 mouse_genomes_project 10 88210781 88251972 - Igf1os antisense antisense MGP_CASTEiJ_T0010951.1 MGP_CASTEiJ_G0009139.1 mouse_genomes_project 10 92756497 92756623 - Gm27582 misc_RNA misc_RNA MGP_CASTEiJ_T0012084.1 MGP_CASTEiJ_G0010247.1 mouse_genomes_project 10 74703396 74703828 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002923.1 MGP_CASTEiJ_G0002743.1 mouse_genomes_project 10 40185550 40188345 + Gm17196 antisense antisense MGP_CASTEiJ_T0012041.1 MGP_CASTEiJ_G0010204.1 mouse_genomes_project 10 4931573 4932216 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023904.1 MGP_CASTEiJ_G0016364.1 mouse_genomes_project 10 10459406 10582903 - MGP_CASTEiJ_P0023904 Phactr2 protein_coding protein_coding MGP_CASTEiJ_T0023905.1 MGP_CASTEiJ_G0016364.1 mouse_genomes_project 10 10465018 10659002 - MGP_CASTEiJ_P0023905 Phactr2 protein_coding protein_coding MGP_CASTEiJ_T0023906.1 MGP_CASTEiJ_G0016364.1 mouse_genomes_project 10 10465018 10743378 - MGP_CASTEiJ_P0023906 Phactr2 protein_coding protein_coding MGP_CASTEiJ_T0023907.1 MGP_CASTEiJ_G0016364.1 mouse_genomes_project 10 10465020 10583032 - MGP_CASTEiJ_P0023907 Phactr2 protein_coding protein_coding MGP_CASTEiJ_T0023908.1 MGP_CASTEiJ_G0016364.1 mouse_genomes_project 10 10465881 10659219 - MGP_CASTEiJ_P0023908 Phactr2 protein_coding protein_coding MGP_CASTEiJ_T0023909.1 MGP_CASTEiJ_G0016364.1 mouse_genomes_project 10 10645217 10658980 - Phactr2 protein_coding processed_transcript MGP_CASTEiJ_T0024794.1 MGP_CASTEiJ_G0016641.1 mouse_genomes_project 10 62095078 62104734 + Rufy2 protein_coding retained_intron MGP_CASTEiJ_T0024795.1 MGP_CASTEiJ_G0016641.1 mouse_genomes_project 10 62095094 62120051 + MGP_CASTEiJ_P0024795 Rufy2 protein_coding protein_coding MGP_CASTEiJ_T0024796.1 MGP_CASTEiJ_G0016641.1 mouse_genomes_project 10 62095097 62131206 + MGP_CASTEiJ_P0024796 Rufy2 protein_coding protein_coding MGP_CASTEiJ_T0024797.1 MGP_CASTEiJ_G0016641.1 mouse_genomes_project 10 62095107 62134487 + MGP_CASTEiJ_P0024797 Rufy2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024798.1 MGP_CASTEiJ_G0016641.1 mouse_genomes_project 10 62095117 62120024 + MGP_CASTEiJ_P0024798 Rufy2 protein_coding protein_coding MGP_CASTEiJ_T0024799.1 MGP_CASTEiJ_G0016641.1 mouse_genomes_project 10 62095148 62117803 + MGP_CASTEiJ_P0024799 Rufy2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024800.1 MGP_CASTEiJ_G0016641.1 mouse_genomes_project 10 62096279 62103606 + MGP_CASTEiJ_P0024800 Rufy2 protein_coding protein_coding MGP_CASTEiJ_T0024801.1 MGP_CASTEiJ_G0016641.1 mouse_genomes_project 10 62117840 62123421 + Rufy2 protein_coding retained_intron MGP_CASTEiJ_T0025972.1 MGP_CASTEiJ_G0016927.1 mouse_genomes_project 10 85139377 85241150 + MGP_CASTEiJ_P0025972 Ric8b protein_coding protein_coding MGP_CASTEiJ_T0025973.1 MGP_CASTEiJ_G0016927.1 mouse_genomes_project 10 85139417 85241150 + MGP_CASTEiJ_P0025973 Ric8b protein_coding protein_coding MGP_CASTEiJ_T0025137.1 MGP_CASTEiJ_G0016711.1 mouse_genomes_project 10 76225883 76231952 - MGP_CASTEiJ_P0025137 Dip2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025138.1 MGP_CASTEiJ_G0016711.1 mouse_genomes_project 10 76229179 76315663 - MGP_CASTEiJ_P0025138 Dip2a protein_coding protein_coding MGP_CASTEiJ_T0025139.1 MGP_CASTEiJ_G0016711.1 mouse_genomes_project 10 76229477 76252258 - Dip2a protein_coding retained_intron MGP_CASTEiJ_T0025140.1 MGP_CASTEiJ_G0016711.1 mouse_genomes_project 10 76229487 76315569 - MGP_CASTEiJ_P0025140 Dip2a protein_coding unknown_likely_coding MGP_CASTEiJ_T0025141.1 MGP_CASTEiJ_G0016711.1 mouse_genomes_project 10 76229494 76315663 - MGP_CASTEiJ_P0025141 Dip2a protein_coding protein_coding MGP_CASTEiJ_T0025142.1 MGP_CASTEiJ_G0016711.1 mouse_genomes_project 10 76229494 76315632 - MGP_CASTEiJ_P0025142 Dip2a protein_coding protein_coding MGP_CASTEiJ_T0025143.1 MGP_CASTEiJ_G0016711.1 mouse_genomes_project 10 76231115 76237015 - Dip2a protein_coding retained_intron MGP_CASTEiJ_T0025144.1 MGP_CASTEiJ_G0016711.1 mouse_genomes_project 10 76249007 76258813 - MGP_CASTEiJ_P0025144 Dip2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025145.1 MGP_CASTEiJ_G0016711.1 mouse_genomes_project 10 76261650 76315604 - Dip2a protein_coding retained_intron MGP_CASTEiJ_T0025110.1 MGP_CASTEiJ_G0016701.1 mouse_genomes_project 10 75813856 75816400 + MGP_CASTEiJ_P0025110 Derl3 protein_coding protein_coding MGP_CASTEiJ_T0100353.1 MGP_CASTEiJ_G0037266.1 mouse_genomes_project 10 12320153 12320283 + Gm23892 snoRNA snoRNA MGP_CASTEiJ_T0000775.1 MGP_CASTEiJ_G0000716.1 mouse_genomes_project 10 16402613 16402903 - TEC TEC MGP_CASTEiJ_T0025518.1 MGP_CASTEiJ_G0016816.1 mouse_genomes_project 10 80359881 80364144 + MGP_CASTEiJ_P0025518 Cirbp protein_coding protein_coding MGP_CASTEiJ_T0025519.1 MGP_CASTEiJ_G0016816.1 mouse_genomes_project 10 80361654 80365477 + MGP_CASTEiJ_P0025519 Cirbp protein_coding protein_coding MGP_CASTEiJ_T0025520.1 MGP_CASTEiJ_G0016816.1 mouse_genomes_project 10 80361716 80366605 + MGP_CASTEiJ_P0025520 Cirbp protein_coding protein_coding MGP_CASTEiJ_T0025521.1 MGP_CASTEiJ_G0016816.1 mouse_genomes_project 10 80361739 80363957 + Cirbp protein_coding retained_intron MGP_CASTEiJ_T0025522.1 MGP_CASTEiJ_G0016816.1 mouse_genomes_project 10 80361762 80364961 + Cirbp protein_coding retained_intron MGP_CASTEiJ_T0025523.1 MGP_CASTEiJ_G0016816.1 mouse_genomes_project 10 80364054 80365028 + Cirbp protein_coding retained_intron MGP_CASTEiJ_T0025524.1 MGP_CASTEiJ_G0016816.1 mouse_genomes_project 10 80365803 80366520 + Cirbp protein_coding retained_intron MGP_CASTEiJ_T0101969.1 MGP_CASTEiJ_G0038694.1 mouse_genomes_project 10 132380709 132380918 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0025250.1 MGP_CASTEiJ_G0016743.1 mouse_genomes_project 10 78023627 78028577 - MGP_CASTEiJ_P0025250 Lrrc3 protein_coding protein_coding MGP_CASTEiJ_T0024564.1 MGP_CASTEiJ_G0016584.1 mouse_genomes_project 10 57539064 57789498 + MGP_CASTEiJ_P0024564 Sh3rf3 protein_coding protein_coding MGP_CASTEiJ_T0024565.1 MGP_CASTEiJ_G0016584.1 mouse_genomes_project 10 57539163 57887720 + MGP_CASTEiJ_P0024565 Sh3rf3 protein_coding protein_coding MGP_CASTEiJ_T0024566.1 MGP_CASTEiJ_G0016584.1 mouse_genomes_project 10 57539764 57750703 + Sh3rf3 protein_coding retained_intron MGP_CASTEiJ_T0024567.1 MGP_CASTEiJ_G0016584.1 mouse_genomes_project 10 57806409 57851619 + Sh3rf3 protein_coding retained_intron MGP_CASTEiJ_T0024568.1 MGP_CASTEiJ_G0016584.1 mouse_genomes_project 10 57822352 57851097 + Sh3rf3 protein_coding processed_transcript MGP_CASTEiJ_T0005914.1 MGP_CASTEiJ_G0004964.1 mouse_genomes_project 10 15676757 15679763 + Gm10827 lincRNA lincRNA MGP_CASTEiJ_T0003002.1 MGP_CASTEiJ_G0002803.1 mouse_genomes_project 10 130582465 130587556 - Gm16230 antisense antisense MGP_CASTEiJ_T0026943.1 MGP_CASTEiJ_G0017234.1 mouse_genomes_project 10 132552769 132553705 + MGP_CASTEiJ_P0026943 Olfr788 protein_coding protein_coding MGP_CASTEiJ_T0010956.1 MGP_CASTEiJ_G0009144.1 mouse_genomes_project 10 110551238 110551516 - Gm22097 misc_RNA misc_RNA MGP_CASTEiJ_T0023705.1 MGP_CASTEiJ_G0016321.1 mouse_genomes_project 10 1447937 1482035 - MGP_CASTEiJ_P0023705 Rmnd1 protein_coding protein_coding MGP_CASTEiJ_T0023706.1 MGP_CASTEiJ_G0016321.1 mouse_genomes_project 10 1450217 1455028 - Rmnd1 protein_coding retained_intron MGP_CASTEiJ_T0023707.1 MGP_CASTEiJ_G0016321.1 mouse_genomes_project 10 1450594 1454837 - MGP_CASTEiJ_P0023707 Rmnd1 protein_coding protein_coding MGP_CASTEiJ_T0023708.1 MGP_CASTEiJ_G0016321.1 mouse_genomes_project 10 1451032 1463316 - Rmnd1 protein_coding retained_intron MGP_CASTEiJ_T0023709.1 MGP_CASTEiJ_G0016321.1 mouse_genomes_project 10 1475656 1481991 - Rmnd1 protein_coding retained_intron MGP_CASTEiJ_T0023710.1 MGP_CASTEiJ_G0016321.1 mouse_genomes_project 10 1476803 1481942 - MGP_CASTEiJ_P0023710 Rmnd1 protein_coding protein_coding MGP_CASTEiJ_T0023711.1 MGP_CASTEiJ_G0016321.1 mouse_genomes_project 10 1477005 1481981 - MGP_CASTEiJ_P0023711 Rmnd1 protein_coding protein_coding MGP_CASTEiJ_T0023712.1 MGP_CASTEiJ_G0016321.1 mouse_genomes_project 10 1477083 1481981 - MGP_CASTEiJ_P0023712 Rmnd1 protein_coding protein_coding MGP_CASTEiJ_T0023713.1 MGP_CASTEiJ_G0016321.1 mouse_genomes_project 10 1478183 1481948 - Rmnd1 protein_coding retained_intron MGP_CASTEiJ_T0002950.1 MGP_CASTEiJ_G0002766.1 mouse_genomes_project 10 80479149 80479713 - Gm15122 antisense antisense MGP_CASTEiJ_T0024290.1 MGP_CASTEiJ_G0016496.1 mouse_genomes_project 10 38487817 38514941 - MGP_CASTEiJ_P0024290 protein_coding protein_coding MGP_CASTEiJ_T0024291.1 MGP_CASTEiJ_G0016496.1 mouse_genomes_project 10 38497244 38514944 - MGP_CASTEiJ_P0024291 protein_coding protein_coding MGP_CASTEiJ_T0024292.1 MGP_CASTEiJ_G0016496.1 mouse_genomes_project 10 38502031 38514938 - MGP_CASTEiJ_P0024292 protein_coding protein_coding MGP_CASTEiJ_T0024293.1 MGP_CASTEiJ_G0016496.1 mouse_genomes_project 10 38503026 38503680 - MGP_CASTEiJ_P0024293 protein_coding protein_coding MGP_CASTEiJ_T0023737.1 MGP_CASTEiJ_G0016327.1 mouse_genomes_project 10 2686400 2698736 + MGP_CASTEiJ_P0023737 Myct1 protein_coding protein_coding MGP_CASTEiJ_T0024817.1 MGP_CASTEiJ_G0016647.1 mouse_genomes_project 10 62473472 62543181 - MGP_CASTEiJ_P0024817 Sirt1 protein_coding protein_coding MGP_CASTEiJ_T0024818.1 MGP_CASTEiJ_G0016647.1 mouse_genomes_project 10 62473474 62494772 - MGP_CASTEiJ_P0024818 Sirt1 protein_coding protein_coding MGP_CASTEiJ_T0024819.1 MGP_CASTEiJ_G0016647.1 mouse_genomes_project 10 62473474 62492728 - MGP_CASTEiJ_P0024819 Sirt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024820.1 MGP_CASTEiJ_G0016647.1 mouse_genomes_project 10 62473474 62494772 - MGP_CASTEiJ_P0024820 Sirt1 protein_coding protein_coding MGP_CASTEiJ_T0024821.1 MGP_CASTEiJ_G0016647.1 mouse_genomes_project 10 62473526 62494775 - MGP_CASTEiJ_P0024821 Sirt1 protein_coding protein_coding MGP_CASTEiJ_T0024822.1 MGP_CASTEiJ_G0016647.1 mouse_genomes_project 10 62475010 62494737 - MGP_CASTEiJ_P0024822 Sirt1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024823.1 MGP_CASTEiJ_G0016647.1 mouse_genomes_project 10 62485657 62492728 - Sirt1 protein_coding retained_intron MGP_CASTEiJ_T0024656.1 MGP_CASTEiJ_G0016606.1 mouse_genomes_project 10 60016177 60070231 - MGP_CASTEiJ_P0024656 Sgpl1 protein_coding protein_coding MGP_CASTEiJ_T0024657.1 MGP_CASTEiJ_G0016606.1 mouse_genomes_project 10 60016177 60070201 - MGP_CASTEiJ_P0024657 Sgpl1 protein_coding protein_coding MGP_CASTEiJ_T0024658.1 MGP_CASTEiJ_G0016606.1 mouse_genomes_project 10 60016180 60070201 - MGP_CASTEiJ_P0024658 Sgpl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024659.1 MGP_CASTEiJ_G0016606.1 mouse_genomes_project 10 60018362 60020684 - Sgpl1 protein_coding retained_intron MGP_CASTEiJ_T0024660.1 MGP_CASTEiJ_G0016606.1 mouse_genomes_project 10 60021753 60023035 - Sgpl1 protein_coding retained_intron MGP_CASTEiJ_T0024661.1 MGP_CASTEiJ_G0016606.1 mouse_genomes_project 10 60031185 60070260 - MGP_CASTEiJ_P0024661 Sgpl1 protein_coding protein_coding MGP_CASTEiJ_T0024662.1 MGP_CASTEiJ_G0016606.1 mouse_genomes_project 10 60034489 60070233 - MGP_CASTEiJ_P0024662 Sgpl1 protein_coding protein_coding MGP_CASTEiJ_T0024663.1 MGP_CASTEiJ_G0016606.1 mouse_genomes_project 10 60037835 60070209 - Sgpl1 protein_coding processed_transcript MGP_CASTEiJ_T0024664.1 MGP_CASTEiJ_G0016606.1 mouse_genomes_project 10 60043705 60069506 - MGP_CASTEiJ_P0024664 Sgpl1 protein_coding protein_coding MGP_CASTEiJ_T0024665.1 MGP_CASTEiJ_G0016606.1 mouse_genomes_project 10 60068487 60070161 - Sgpl1 protein_coding retained_intron MGP_CASTEiJ_T0002971.1 MGP_CASTEiJ_G0002782.1 mouse_genomes_project 10 87266340 87267641 + Gm16280 antisense antisense MGP_CASTEiJ_T0012093.1 MGP_CASTEiJ_G0010256.1 mouse_genomes_project 10 97389048 97389957 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009388.1 MGP_CASTEiJ_G0007576.1 mouse_genomes_project 10 125743786 125743882 - Gm27920 miRNA miRNA MGP_CASTEiJ_T0100356.1 MGP_CASTEiJ_G0037269.1 mouse_genomes_project 10 21525049 21525123 - Snord100 snoRNA snoRNA MGP_CASTEiJ_T0024396.1 MGP_CASTEiJ_G0016526.1 mouse_genomes_project 10 41289553 41290467 + Ostm1 protein_coding processed_transcript MGP_CASTEiJ_T0024397.1 MGP_CASTEiJ_G0016526.1 mouse_genomes_project 10 41289566 41422227 + MGP_CASTEiJ_P0024397 Ostm1 protein_coding protein_coding MGP_CASTEiJ_T0024398.1 MGP_CASTEiJ_G0016526.1 mouse_genomes_project 10 41289569 41424407 + MGP_CASTEiJ_P0024398 Ostm1 protein_coding protein_coding MGP_CASTEiJ_T0024399.1 MGP_CASTEiJ_G0016526.1 mouse_genomes_project 10 41399537 41426367 + MGP_CASTEiJ_P0024399 Ostm1 protein_coding protein_coding MGP_CASTEiJ_T0024400.1 MGP_CASTEiJ_G0016526.1 mouse_genomes_project 10 41399577 41437790 + MGP_CASTEiJ_P0024400 Ostm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024401.1 MGP_CASTEiJ_G0016526.1 mouse_genomes_project 10 41399587 41423903 + Ostm1 protein_coding retained_intron MGP_CASTEiJ_T0016365.1 MGP_CASTEiJ_G0014445.1 mouse_genomes_project 10 18089889 18095093 - processed_transcript processed_transcript MGP_CASTEiJ_T0012037.1 MGP_CASTEiJ_G0010200.1 mouse_genomes_project 10 860593 860903 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024089.1 MGP_CASTEiJ_G0016424.1 mouse_genomes_project 10 21774422 21775870 + MGP_CASTEiJ_P0024089 Taar7d protein_coding protein_coding MGP_CASTEiJ_T0099191.1 MGP_CASTEiJ_G0036104.1 mouse_genomes_project 10 88558001 88558116 - Gm26357 snRNA snRNA MGP_CASTEiJ_T0024578.1 MGP_CASTEiJ_G0016590.1 mouse_genomes_project 10 58224288 58403966 - MGP_CASTEiJ_P0024578 Mcu protein_coding protein_coding MGP_CASTEiJ_T0024579.1 MGP_CASTEiJ_G0016590.1 mouse_genomes_project 10 58225880 58235598 - MGP_CASTEiJ_P0024579 Mcu protein_coding protein_coding MGP_CASTEiJ_T0024580.1 MGP_CASTEiJ_G0016590.1 mouse_genomes_project 10 58314788 58403949 - MGP_CASTEiJ_P0024580 Mcu protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024581.1 MGP_CASTEiJ_G0016590.1 mouse_genomes_project 10 58386387 58403953 - Mcu protein_coding processed_transcript MGP_CASTEiJ_T0024582.1 MGP_CASTEiJ_G0016590.1 mouse_genomes_project 10 58387152 58403929 - Mcu protein_coding processed_transcript MGP_CASTEiJ_T0009335.1 MGP_CASTEiJ_G0007523.1 mouse_genomes_project 10 43994241 43994316 - Gm23766 miRNA miRNA MGP_CASTEiJ_T0026959.1 MGP_CASTEiJ_G0017247.1 mouse_genomes_project 10 132838267 132843111 - MGP_CASTEiJ_P0026959 Olfr806 protein_coding protein_coding MGP_CASTEiJ_T0026960.1 MGP_CASTEiJ_G0017247.1 mouse_genomes_project 10 132838267 132845934 - MGP_CASTEiJ_P0026960 Olfr806 protein_coding protein_coding MGP_CASTEiJ_T0024419.1 MGP_CASTEiJ_G0016530.1 mouse_genomes_project 10 41941558 41943400 + MGP_CASTEiJ_P0024419 9030612E09Rik protein_coding protein_coding MGP_CASTEiJ_T0026944.1 MGP_CASTEiJ_G0017235.1 mouse_genomes_project 10 132569938 132570877 + MGP_CASTEiJ_P0026944 Olfr789 protein_coding protein_coding MGP_CASTEiJ_T0009348.1 MGP_CASTEiJ_G0007536.1 mouse_genomes_project 10 78486431 78486485 - Mir7659 miRNA miRNA MGP_CASTEiJ_T0026217.1 MGP_CASTEiJ_G0016982.1 mouse_genomes_project 10 94233669 94251063 - MGP_CASTEiJ_P0026217 Amdhd1 protein_coding protein_coding MGP_CASTEiJ_T0024063.1 MGP_CASTEiJ_G0016408.1 mouse_genomes_project 10 19906746 19916975 + MGP_CASTEiJ_P0024063 protein_coding protein_coding MGP_CASTEiJ_T0024064.1 MGP_CASTEiJ_G0016408.1 mouse_genomes_project 10 19907144 19916978 + MGP_CASTEiJ_P0024064 protein_coding protein_coding MGP_CASTEiJ_T0099173.1 MGP_CASTEiJ_G0036086.1 mouse_genomes_project 10 50149937 50150044 + Gm26257 snRNA snRNA MGP_CASTEiJ_T0026923.1 MGP_CASTEiJ_G0017218.1 mouse_genomes_project 10 132136157 132165079 - MGP_CASTEiJ_P0026923 protein_coding protein_coding MGP_CASTEiJ_T0012064.1 MGP_CASTEiJ_G0010227.1 mouse_genomes_project 10 51080405 51080955 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0026637.1 MGP_CASTEiJ_G0017118.1 mouse_genomes_project 10 128710820 128770620 + MGP_CASTEiJ_P0026637 Lrig3 protein_coding protein_coding MGP_CASTEiJ_T0026638.1 MGP_CASTEiJ_G0017118.1 mouse_genomes_project 10 128760747 128769782 + MGP_CASTEiJ_P0026638 Lrig3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026301.1 MGP_CASTEiJ_G0017010.1 mouse_genomes_project 10 98718862 98720760 - MGP_CASTEiJ_P0026301 C030005K15Rik protein_coding protein_coding MGP_CASTEiJ_T0023986.1 MGP_CASTEiJ_G0016386.1 mouse_genomes_project 10 16493884 16510090 - MGP_CASTEiJ_P0023986 Tnfaip3 protein_coding protein_coding MGP_CASTEiJ_T0023987.1 MGP_CASTEiJ_G0016386.1 mouse_genomes_project 10 16493887 16506633 - MGP_CASTEiJ_P0023987 Tnfaip3 protein_coding protein_coding MGP_CASTEiJ_T0023988.1 MGP_CASTEiJ_G0016386.1 mouse_genomes_project 10 16493903 16510056 - Tnfaip3 protein_coding retained_intron MGP_CASTEiJ_T0023989.1 MGP_CASTEiJ_G0016386.1 mouse_genomes_project 10 16500243 16501822 - Tnfaip3 protein_coding retained_intron MGP_CASTEiJ_T0023990.1 MGP_CASTEiJ_G0016386.1 mouse_genomes_project 10 16501242 16510337 - MGP_CASTEiJ_P0023990 Tnfaip3 protein_coding protein_coding MGP_CASTEiJ_T0023991.1 MGP_CASTEiJ_G0016386.1 mouse_genomes_project 10 16506185 16509262 - MGP_CASTEiJ_P0023991 Tnfaip3 protein_coding protein_coding MGP_CASTEiJ_T0026533.1 MGP_CASTEiJ_G0017089.1 mouse_genomes_project 10 120319460 120346755 + MGP_CASTEiJ_P0026533 Mdm1 protein_coding protein_coding MGP_CASTEiJ_T0026534.1 MGP_CASTEiJ_G0017089.1 mouse_genomes_project 10 120319460 120346755 + MGP_CASTEiJ_P0026534 Mdm1 protein_coding protein_coding MGP_CASTEiJ_T0026535.1 MGP_CASTEiJ_G0017089.1 mouse_genomes_project 10 120319460 120346755 + MGP_CASTEiJ_P0026535 Mdm1 protein_coding protein_coding MGP_CASTEiJ_T0026536.1 MGP_CASTEiJ_G0017089.1 mouse_genomes_project 10 120319460 120346755 + MGP_CASTEiJ_P0026536 Mdm1 protein_coding protein_coding MGP_CASTEiJ_T0026978.1 MGP_CASTEiJ_G0017261.1 mouse_genomes_project 10 133247255 133248152 - MGP_CASTEiJ_P0026978 protein_coding protein_coding MGP_CASTEiJ_T0100403.1 MGP_CASTEiJ_G0037316.1 mouse_genomes_project 10 131074479 131074553 + Snord59a snoRNA snoRNA MGP_CASTEiJ_T0023877.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10304478 10374910 + MGP_CASTEiJ_P0023877 Plagl1 protein_coding protein_coding MGP_CASTEiJ_T0023878.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336414 10372408 + Plagl1 protein_coding processed_transcript MGP_CASTEiJ_T0023879.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336435 10372563 + Plagl1 protein_coding processed_transcript MGP_CASTEiJ_T0023880.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336511 10372447 + Plagl1 protein_coding processed_transcript MGP_CASTEiJ_T0023881.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336511 10379136 + MGP_CASTEiJ_P0023881 Plagl1 protein_coding protein_coding MGP_CASTEiJ_T0023882.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336555 10364397 + Plagl1 protein_coding processed_transcript MGP_CASTEiJ_T0023883.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336555 10364320 + Plagl1 protein_coding processed_transcript MGP_CASTEiJ_T0023884.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336555 10355566 + Plagl1 protein_coding processed_transcript MGP_CASTEiJ_T0023885.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336555 10364336 + Plagl1 protein_coding processed_transcript MGP_CASTEiJ_T0023886.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336555 10372447 + Plagl1 protein_coding processed_transcript MGP_CASTEiJ_T0023887.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336555 10360179 + Plagl1 protein_coding processed_transcript MGP_CASTEiJ_T0023888.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336555 10361831 + Plagl1 protein_coding processed_transcript MGP_CASTEiJ_T0023889.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336555 10364338 + Plagl1 protein_coding processed_transcript MGP_CASTEiJ_T0023890.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336555 10364380 + Plagl1 protein_coding processed_transcript MGP_CASTEiJ_T0023891.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336555 10372528 + Plagl1 protein_coding processed_transcript MGP_CASTEiJ_T0023892.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336555 10353035 + Plagl1 protein_coding retained_intron MGP_CASTEiJ_T0023893.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336555 10372465 + Plagl1 protein_coding processed_transcript MGP_CASTEiJ_T0023894.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336555 10378541 + MGP_CASTEiJ_P0023894 Plagl1 protein_coding protein_coding MGP_CASTEiJ_T0023895.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336558 10378528 + MGP_CASTEiJ_P0023895 Plagl1 protein_coding protein_coding MGP_CASTEiJ_T0023896.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336564 10361079 + Plagl1 protein_coding retained_intron MGP_CASTEiJ_T0023897.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336597 10360520 + Plagl1 protein_coding retained_intron MGP_CASTEiJ_T0023898.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336597 10360420 + Plagl1 protein_coding retained_intron MGP_CASTEiJ_T0023899.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10336736 10372578 + MGP_CASTEiJ_P0023899 Plagl1 protein_coding protein_coding MGP_CASTEiJ_T0023900.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10361099 10374897 + MGP_CASTEiJ_P0023900 Plagl1 protein_coding protein_coding MGP_CASTEiJ_T0023901.1 MGP_CASTEiJ_G0016361.1 mouse_genomes_project 10 10363980 10372615 + MGP_CASTEiJ_P0023901 Plagl1 protein_coding protein_coding MGP_CASTEiJ_T0000795.1 MGP_CASTEiJ_G0000735.1 mouse_genomes_project 10 120178270 120178620 + TEC TEC MGP_CASTEiJ_T0025674.1 MGP_CASTEiJ_G0016857.1 mouse_genomes_project 10 81169946 81171466 - MGP_CASTEiJ_P0025674 Timm13 protein_coding protein_coding MGP_CASTEiJ_T0099167.1 MGP_CASTEiJ_G0036080.1 mouse_genomes_project 10 40006157 40006264 + Gm25626 snRNA snRNA MGP_CASTEiJ_T0002987.1 MGP_CASTEiJ_G0002793.1 mouse_genomes_project 10 118499448 118501271 + Kcnmb4os2 antisense antisense MGP_CASTEiJ_T0002988.1 MGP_CASTEiJ_G0002793.1 mouse_genomes_project 10 118500313 118502549 + Kcnmb4os2 antisense antisense MGP_CASTEiJ_T0002989.1 MGP_CASTEiJ_G0002793.1 mouse_genomes_project 10 118500630 118501276 + Kcnmb4os2 antisense antisense MGP_CASTEiJ_T0024193.1 MGP_CASTEiJ_G0016459.1 mouse_genomes_project 10 29401356 29407024 + MGP_CASTEiJ_P0024193 Gm5422 protein_coding protein_coding MGP_CASTEiJ_T0026420.1 MGP_CASTEiJ_G0017050.1 mouse_genomes_project 10 113623625 113639143 + MGP_CASTEiJ_P0026420 Krr1 protein_coding protein_coding MGP_CASTEiJ_T0026421.1 MGP_CASTEiJ_G0017050.1 mouse_genomes_project 10 113623673 113656161 + MGP_CASTEiJ_P0026421 Krr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026422.1 MGP_CASTEiJ_G0017050.1 mouse_genomes_project 10 113623718 113628211 + Krr1 protein_coding retained_intron MGP_CASTEiJ_T0026423.1 MGP_CASTEiJ_G0017050.1 mouse_genomes_project 10 113623736 113638413 + Krr1 protein_coding retained_intron MGP_CASTEiJ_T0026424.1 MGP_CASTEiJ_G0017050.1 mouse_genomes_project 10 113623754 113636105 + MGP_CASTEiJ_P0026424 Krr1 protein_coding protein_coding MGP_CASTEiJ_T0002927.1 MGP_CASTEiJ_G0002747.1 mouse_genomes_project 10 41937039 41939309 + antisense antisense MGP_CASTEiJ_T0099205.1 MGP_CASTEiJ_G0036118.1 mouse_genomes_project 10 116877251 116877358 + Gm22070 snRNA snRNA MGP_CASTEiJ_T0026738.1 MGP_CASTEiJ_G0017149.1 mouse_genomes_project 10 130418961 130429057 - MGP_CASTEiJ_P0026738 Nxph4 protein_coding protein_coding MGP_CASTEiJ_T0025358.1 MGP_CASTEiJ_G0016778.1 mouse_genomes_project 10 79751145 79771237 - MGP_CASTEiJ_P0025358 Shc2 protein_coding protein_coding MGP_CASTEiJ_T0025359.1 MGP_CASTEiJ_G0016778.1 mouse_genomes_project 10 79751260 79755933 - Shc2 protein_coding retained_intron MGP_CASTEiJ_T0025360.1 MGP_CASTEiJ_G0016778.1 mouse_genomes_project 10 79751861 79771237 - MGP_CASTEiJ_P0025360 Shc2 protein_coding protein_coding MGP_CASTEiJ_T0025361.1 MGP_CASTEiJ_G0016778.1 mouse_genomes_project 10 79753300 79756289 - Shc2 protein_coding retained_intron MGP_CASTEiJ_T0024433.1 MGP_CASTEiJ_G0016534.1 mouse_genomes_project 10 42380764 42386210 + MGP_CASTEiJ_P0024433 Cd24a protein_coding protein_coding MGP_CASTEiJ_T0024770.1 MGP_CASTEiJ_G0016635.1 mouse_genomes_project 10 61698319 61733563 - MGP_CASTEiJ_P0024770 Ddx50 protein_coding protein_coding MGP_CASTEiJ_T0024771.1 MGP_CASTEiJ_G0016635.1 mouse_genomes_project 10 61698534 61733854 - MGP_CASTEiJ_P0024771 Ddx50 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099208.1 MGP_CASTEiJ_G0036121.1 mouse_genomes_project 10 129991063 129991152 - Gm23664 snRNA snRNA MGP_CASTEiJ_T0025413.1 MGP_CASTEiJ_G0016794.1 mouse_genomes_project 10 80018172 80034045 - MGP_CASTEiJ_P0025413 Plppr3 protein_coding protein_coding MGP_CASTEiJ_T0025415.1 MGP_CASTEiJ_G0016794.1 mouse_genomes_project 10 80024498 80034045 - Plppr3 protein_coding retained_intron MGP_CASTEiJ_T0025416.1 MGP_CASTEiJ_G0016794.1 mouse_genomes_project 10 80024498 80033841 - Plppr3 protein_coding retained_intron MGP_CASTEiJ_T0025417.1 MGP_CASTEiJ_G0016794.1 mouse_genomes_project 10 80024498 80034109 - MGP_CASTEiJ_P0025417 Plppr3 protein_coding protein_coding MGP_CASTEiJ_T0025418.1 MGP_CASTEiJ_G0016794.1 mouse_genomes_project 10 80026126 80026996 - Plppr3 protein_coding retained_intron MGP_CASTEiJ_T0025419.1 MGP_CASTEiJ_G0016794.1 mouse_genomes_project 10 80026146 80033699 - MGP_CASTEiJ_P0025419 Plppr3 protein_coding protein_coding MGP_CASTEiJ_T0025420.1 MGP_CASTEiJ_G0016794.1 mouse_genomes_project 10 80026152 80033883 - MGP_CASTEiJ_P0025420 Plppr3 protein_coding protein_coding MGP_CASTEiJ_T0025421.1 MGP_CASTEiJ_G0016794.1 mouse_genomes_project 10 80026568 80033864 - Plppr3 protein_coding processed_transcript MGP_CASTEiJ_T0025422.1 MGP_CASTEiJ_G0016794.1 mouse_genomes_project 10 80026622 80033874 - MGP_CASTEiJ_P0025422 Plppr3 protein_coding protein_coding MGP_CASTEiJ_T0025423.1 MGP_CASTEiJ_G0016794.1 mouse_genomes_project 10 80027173 80033845 - MGP_CASTEiJ_P0025423 Plppr3 protein_coding protein_coding MGP_CASTEiJ_T0101968.1 MGP_CASTEiJ_G0038693.1 mouse_genomes_project 10 132294666 132300823 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0026662.1 MGP_CASTEiJ_G0017126.1 mouse_genomes_project 10 129898702 129903881 - MGP_CASTEiJ_P0026662 March9 protein_coding protein_coding MGP_CASTEiJ_T0026891.1 MGP_CASTEiJ_G0017202.1 mouse_genomes_project 10 131763637 131780311 + MGP_CASTEiJ_P0026891 Pmel protein_coding unknown_likely_coding MGP_CASTEiJ_T0010955.1 MGP_CASTEiJ_G0009143.1 mouse_genomes_project 10 96450004 96450329 + Gm23776 misc_RNA misc_RNA MGP_CASTEiJ_T0024075.1 MGP_CASTEiJ_G0016414.1 mouse_genomes_project 10 21537950 21572121 + MGP_CASTEiJ_P0024075 Slc18b1 protein_coding protein_coding MGP_CASTEiJ_T0024076.1 MGP_CASTEiJ_G0016414.1 mouse_genomes_project 10 21538016 21548349 + MGP_CASTEiJ_P0024076 Slc18b1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024077.1 MGP_CASTEiJ_G0016414.1 mouse_genomes_project 10 21538164 21548301 + MGP_CASTEiJ_P0024077 Slc18b1 protein_coding protein_coding MGP_CASTEiJ_T0024078.1 MGP_CASTEiJ_G0016414.1 mouse_genomes_project 10 21548365 21563342 + MGP_CASTEiJ_P0024078 Slc18b1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024079.1 MGP_CASTEiJ_G0016414.1 mouse_genomes_project 10 21568688 21571258 + Slc18b1 protein_coding retained_intron MGP_CASTEiJ_T0026337.1 MGP_CASTEiJ_G0017023.1 mouse_genomes_project 10 102773287 103136106 + Mgat4c protein_coding retained_intron MGP_CASTEiJ_T0026338.1 MGP_CASTEiJ_G0017023.1 mouse_genomes_project 10 102773287 103558619 + MGP_CASTEiJ_P0026338 Mgat4c protein_coding protein_coding MGP_CASTEiJ_T0026339.1 MGP_CASTEiJ_G0017023.1 mouse_genomes_project 10 102773441 103542676 + Mgat4c protein_coding processed_transcript MGP_CASTEiJ_T0026340.1 MGP_CASTEiJ_G0017023.1 mouse_genomes_project 10 102773441 103543335 + MGP_CASTEiJ_P0026340 Mgat4c protein_coding protein_coding MGP_CASTEiJ_T0026341.1 MGP_CASTEiJ_G0017023.1 mouse_genomes_project 10 102773546 103550774 + MGP_CASTEiJ_P0026341 Mgat4c protein_coding protein_coding MGP_CASTEiJ_T0026342.1 MGP_CASTEiJ_G0017023.1 mouse_genomes_project 10 103306705 103555427 + MGP_CASTEiJ_P0026342 Mgat4c protein_coding protein_coding MGP_CASTEiJ_T0026343.1 MGP_CASTEiJ_G0017023.1 mouse_genomes_project 10 103306705 103558622 + MGP_CASTEiJ_P0026343 Mgat4c protein_coding protein_coding MGP_CASTEiJ_T0026344.1 MGP_CASTEiJ_G0017023.1 mouse_genomes_project 10 103306725 103430105 + Mgat4c protein_coding processed_transcript MGP_CASTEiJ_T0026345.1 MGP_CASTEiJ_G0017023.1 mouse_genomes_project 10 103306736 103543262 + MGP_CASTEiJ_P0026345 Mgat4c protein_coding protein_coding MGP_CASTEiJ_T0026346.1 MGP_CASTEiJ_G0017023.1 mouse_genomes_project 10 103306752 103430106 + Mgat4c protein_coding processed_transcript MGP_CASTEiJ_T0026347.1 MGP_CASTEiJ_G0017023.1 mouse_genomes_project 10 103306926 103558622 + MGP_CASTEiJ_P0026347 Mgat4c protein_coding protein_coding MGP_CASTEiJ_T0026348.1 MGP_CASTEiJ_G0017023.1 mouse_genomes_project 10 103538785 103557364 + MGP_CASTEiJ_P0026348 Mgat4c protein_coding protein_coding MGP_CASTEiJ_T0024002.1 MGP_CASTEiJ_G0016392.1 mouse_genomes_project 10 17389996 17393540 - MGP_CASTEiJ_P0024002 Slc35d3 protein_coding protein_coding MGP_CASTEiJ_T0026902.1 MGP_CASTEiJ_G0017209.1 mouse_genomes_project 10 131887810 131947113 + MGP_CASTEiJ_P0026902 protein_coding protein_coding MGP_CASTEiJ_T0026444.1 MGP_CASTEiJ_G0017060.1 mouse_genomes_project 10 117097238 117160896 - MGP_CASTEiJ_P0026444 Tbc1d15 protein_coding protein_coding MGP_CASTEiJ_T0024497.1 MGP_CASTEiJ_G0016562.1 mouse_genomes_project 10 52317542 52328984 + MGP_CASTEiJ_P0024497 Pln protein_coding protein_coding MGP_CASTEiJ_T0024498.1 MGP_CASTEiJ_G0016562.1 mouse_genomes_project 10 52317542 52328984 + MGP_CASTEiJ_P0024498 Pln protein_coding protein_coding MGP_CASTEiJ_T0026952.1 MGP_CASTEiJ_G0017241.1 mouse_genomes_project 10 132730429 132731365 + MGP_CASTEiJ_P0026952 Olfr799 protein_coding protein_coding MGP_CASTEiJ_T0012054.1 MGP_CASTEiJ_G0010217.1 mouse_genomes_project 10 29805724 29807027 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024311.1 MGP_CASTEiJ_G0016506.1 mouse_genomes_project 10 39428418 39483660 - MGP_CASTEiJ_P0024311 Cdc40 protein_coding protein_coding MGP_CASTEiJ_T0098445.1 MGP_CASTEiJ_G0035376.1 mouse_genomes_project 10 28813123 28813217 - Gm24189 rRNA rRNA MGP_CASTEiJ_T0024435.1 MGP_CASTEiJ_G0016536.1 mouse_genomes_project 10 42690154 42718174 - MGP_CASTEiJ_P0024435 Qrsl1 protein_coding protein_coding MGP_CASTEiJ_T0024436.1 MGP_CASTEiJ_G0016536.1 mouse_genomes_project 10 42690388 42693029 - Qrsl1 protein_coding retained_intron MGP_CASTEiJ_T0024437.1 MGP_CASTEiJ_G0016536.1 mouse_genomes_project 10 42693911 42718174 - Qrsl1 protein_coding retained_intron MGP_CASTEiJ_T0023957.1 MGP_CASTEiJ_G0016378.1 mouse_genomes_project 10 15485965 15562059 + MGP_CASTEiJ_P0023957 Reps1 protein_coding protein_coding MGP_CASTEiJ_T0023958.1 MGP_CASTEiJ_G0016378.1 mouse_genomes_project 10 15486220 15562241 + MGP_CASTEiJ_P0023958 Reps1 protein_coding protein_coding MGP_CASTEiJ_T0023959.1 MGP_CASTEiJ_G0016378.1 mouse_genomes_project 10 15486265 15562255 + MGP_CASTEiJ_P0023959 Reps1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023960.1 MGP_CASTEiJ_G0016378.1 mouse_genomes_project 10 15486299 15562266 + MGP_CASTEiJ_P0023960 Reps1 protein_coding protein_coding MGP_CASTEiJ_T0023961.1 MGP_CASTEiJ_G0016378.1 mouse_genomes_project 10 15524007 15538141 + Reps1 protein_coding retained_intron MGP_CASTEiJ_T0023962.1 MGP_CASTEiJ_G0016378.1 mouse_genomes_project 10 15525710 15537309 + MGP_CASTEiJ_P0023962 Reps1 protein_coding protein_coding MGP_CASTEiJ_T0023963.1 MGP_CASTEiJ_G0016378.1 mouse_genomes_project 10 15527084 15550883 + MGP_CASTEiJ_P0023963 Reps1 protein_coding protein_coding MGP_CASTEiJ_T0023964.1 MGP_CASTEiJ_G0016378.1 mouse_genomes_project 10 15547633 15554560 + Reps1 protein_coding retained_intron MGP_CASTEiJ_T0023965.1 MGP_CASTEiJ_G0016378.1 mouse_genomes_project 10 15559346 15560272 + Reps1 protein_coding retained_intron MGP_CASTEiJ_T0024315.1 MGP_CASTEiJ_G0016509.1 mouse_genomes_project 10 39811044 39926806 - MGP_CASTEiJ_P0024315 Fig4 protein_coding protein_coding MGP_CASTEiJ_T0024316.1 MGP_CASTEiJ_G0016509.1 mouse_genomes_project 10 39811130 39926647 - MGP_CASTEiJ_P0024316 Fig4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100378.1 MGP_CASTEiJ_G0037291.1 mouse_genomes_project 10 68573502 68573619 + Gm24172 snoRNA snoRNA MGP_CASTEiJ_T0025564.1 MGP_CASTEiJ_G0016826.1 mouse_genomes_project 10 80526098 80534119 - Pcsk4 protein_coding retained_intron MGP_CASTEiJ_T0025565.1 MGP_CASTEiJ_G0016826.1 mouse_genomes_project 10 80526098 80534121 - MGP_CASTEiJ_P0025565 Pcsk4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025566.1 MGP_CASTEiJ_G0016826.1 mouse_genomes_project 10 80526098 80534164 - MGP_CASTEiJ_P0025566 Pcsk4 protein_coding protein_coding MGP_CASTEiJ_T0025567.1 MGP_CASTEiJ_G0016826.1 mouse_genomes_project 10 80526102 80528007 - Pcsk4 protein_coding retained_intron MGP_CASTEiJ_T0025568.1 MGP_CASTEiJ_G0016826.1 mouse_genomes_project 10 80526102 80528006 - Pcsk4 protein_coding retained_intron MGP_CASTEiJ_T0025569.1 MGP_CASTEiJ_G0016826.1 mouse_genomes_project 10 80526937 80534065 - MGP_CASTEiJ_P0025569 Pcsk4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0002963.1 MGP_CASTEiJ_G0002776.1 mouse_genomes_project 10 82238045 82260190 + Gm15608 antisense antisense MGP_CASTEiJ_T0002964.1 MGP_CASTEiJ_G0002776.1 mouse_genomes_project 10 82244297 82260171 + Gm15608 antisense antisense MGP_CASTEiJ_T0101965.1 MGP_CASTEiJ_G0038690.1 mouse_genomes_project 10 106490043 106490202 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0026950.1 MGP_CASTEiJ_G0017240.1 mouse_genomes_project 10 132690561 132691494 - MGP_CASTEiJ_P0026950 Olfr796 protein_coding protein_coding MGP_CASTEiJ_T0026951.1 MGP_CASTEiJ_G0017240.1 mouse_genomes_project 10 132690561 132695087 - MGP_CASTEiJ_P0026951 Olfr796 protein_coding protein_coding MGP_CASTEiJ_T0025621.1 MGP_CASTEiJ_G0016837.1 mouse_genomes_project 10 80805810 80816005 - MGP_CASTEiJ_P0025621 Klf16 protein_coding protein_coding MGP_CASTEiJ_T0101971.1 MGP_CASTEiJ_G0038696.1 mouse_genomes_project 10 132631442 132632389 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0025787.1 MGP_CASTEiJ_G0016886.1 mouse_genomes_project 10 81677211 81689701 - MGP_CASTEiJ_P0025787 Fzr1 protein_coding protein_coding MGP_CASTEiJ_T0025788.1 MGP_CASTEiJ_G0016886.1 mouse_genomes_project 10 81678087 81689636 - MGP_CASTEiJ_P0025788 Fzr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025789.1 MGP_CASTEiJ_G0016886.1 mouse_genomes_project 10 81678361 81689648 - Fzr1 protein_coding retained_intron MGP_CASTEiJ_T0025790.1 MGP_CASTEiJ_G0016886.1 mouse_genomes_project 10 81678498 81682403 - MGP_CASTEiJ_P0025790 Fzr1 protein_coding protein_coding MGP_CASTEiJ_T0025791.1 MGP_CASTEiJ_G0016886.1 mouse_genomes_project 10 81679265 81680531 - Fzr1 protein_coding retained_intron MGP_CASTEiJ_T0025792.1 MGP_CASTEiJ_G0016886.1 mouse_genomes_project 10 81686562 81689565 - Fzr1 protein_coding processed_transcript MGP_CASTEiJ_T0024776.1 MGP_CASTEiJ_G0016638.1 mouse_genomes_project 10 61902555 61988365 - MGP_CASTEiJ_P0024776 Tet1 protein_coding protein_coding MGP_CASTEiJ_T0024777.1 MGP_CASTEiJ_G0016638.1 mouse_genomes_project 10 61902562 62011359 - MGP_CASTEiJ_P0024777 Tet1 protein_coding protein_coding MGP_CASTEiJ_T0024778.1 MGP_CASTEiJ_G0016638.1 mouse_genomes_project 10 61911739 61986697 - MGP_CASTEiJ_P0024778 Tet1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024779.1 MGP_CASTEiJ_G0016638.1 mouse_genomes_project 10 61912015 61970924 - MGP_CASTEiJ_P0024779 Tet1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024780.1 MGP_CASTEiJ_G0016638.1 mouse_genomes_project 10 61912105 61914094 - MGP_CASTEiJ_P0024780 Tet1 protein_coding protein_coding MGP_CASTEiJ_T0024781.1 MGP_CASTEiJ_G0016638.1 mouse_genomes_project 10 61912609 61914095 - MGP_CASTEiJ_P0024781 Tet1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024782.1 MGP_CASTEiJ_G0016638.1 mouse_genomes_project 10 61912831 61914093 - MGP_CASTEiJ_P0024782 Tet1 protein_coding protein_coding MGP_CASTEiJ_T0024783.1 MGP_CASTEiJ_G0016638.1 mouse_genomes_project 10 61941717 61970648 - Tet1 protein_coding processed_transcript MGP_CASTEiJ_T0026462.1 MGP_CASTEiJ_G0017067.1 mouse_genomes_project 10 117780329 117816061 + MGP_CASTEiJ_P0026462 Tspan8 protein_coding protein_coding MGP_CASTEiJ_T0026463.1 MGP_CASTEiJ_G0017067.1 mouse_genomes_project 10 117780329 117816061 + MGP_CASTEiJ_P0026463 Tspan8 protein_coding protein_coding MGP_CASTEiJ_T0026464.1 MGP_CASTEiJ_G0017067.1 mouse_genomes_project 10 117780329 117816061 + MGP_CASTEiJ_P0026464 Tspan8 protein_coding protein_coding MGP_CASTEiJ_T0026037.1 MGP_CASTEiJ_G0016947.1 mouse_genomes_project 10 87427331 87591721 + MGP_CASTEiJ_P0026037 1700113H08Rik protein_coding protein_coding MGP_CASTEiJ_T0026038.1 MGP_CASTEiJ_G0016947.1 mouse_genomes_project 10 87427332 87591720 + MGP_CASTEiJ_P0026038 1700113H08Rik protein_coding protein_coding MGP_CASTEiJ_T0026039.1 MGP_CASTEiJ_G0016947.1 mouse_genomes_project 10 87563900 87591719 + MGP_CASTEiJ_P0026039 1700113H08Rik protein_coding protein_coding MGP_CASTEiJ_T0003000.1 MGP_CASTEiJ_G0002801.1 mouse_genomes_project 10 130495140 130496515 + Gm16217 antisense antisense MGP_CASTEiJ_T0026933.1 MGP_CASTEiJ_G0017225.1 mouse_genomes_project 10 132333080 132543673 + MGP_CASTEiJ_P0026933 Olfr774 protein_coding protein_coding MGP_CASTEiJ_T0026934.1 MGP_CASTEiJ_G0017225.1 mouse_genomes_project 10 132351083 132543673 + MGP_CASTEiJ_P0026934 Olfr774 protein_coding protein_coding MGP_CASTEiJ_T0023835.1 MGP_CASTEiJ_G0016350.1 mouse_genomes_project 10 6967130 7117421 - MGP_CASTEiJ_P0023835 Stxbp5 protein_coding protein_coding MGP_CASTEiJ_T0023836.1 MGP_CASTEiJ_G0016350.1 mouse_genomes_project 10 6971554 7117817 - MGP_CASTEiJ_P0023836 Stxbp5 protein_coding protein_coding MGP_CASTEiJ_T0023837.1 MGP_CASTEiJ_G0016350.1 mouse_genomes_project 10 6971592 7013227 - Stxbp5 protein_coding processed_transcript MGP_CASTEiJ_T0023838.1 MGP_CASTEiJ_G0016350.1 mouse_genomes_project 10 6972177 6993367 - Stxbp5 protein_coding retained_intron MGP_CASTEiJ_T0023839.1 MGP_CASTEiJ_G0016350.1 mouse_genomes_project 10 6972509 7117421 - MGP_CASTEiJ_P0023839 Stxbp5 protein_coding protein_coding MGP_CASTEiJ_T0023840.1 MGP_CASTEiJ_G0016350.1 mouse_genomes_project 10 6978689 6982111 - Stxbp5 protein_coding retained_intron MGP_CASTEiJ_T0023841.1 MGP_CASTEiJ_G0016350.1 mouse_genomes_project 10 6978692 6980539 - Stxbp5 protein_coding retained_intron MGP_CASTEiJ_T0023842.1 MGP_CASTEiJ_G0016350.1 mouse_genomes_project 10 6978799 6991348 - Stxbp5 protein_coding retained_intron MGP_CASTEiJ_T0023843.1 MGP_CASTEiJ_G0016350.1 mouse_genomes_project 10 6981027 7013387 - MGP_CASTEiJ_P0023843 Stxbp5 protein_coding protein_coding MGP_CASTEiJ_T0023844.1 MGP_CASTEiJ_G0016350.1 mouse_genomes_project 10 6981193 6991348 - Stxbp5 protein_coding retained_intron MGP_CASTEiJ_T0023845.1 MGP_CASTEiJ_G0016350.1 mouse_genomes_project 10 7002068 7013358 - Stxbp5 protein_coding retained_intron MGP_CASTEiJ_T0024171.1 MGP_CASTEiJ_G0016448.1 mouse_genomes_project 10 27218564 27219479 - MGP_CASTEiJ_P0024171 Gm9996 protein_coding protein_coding MGP_CASTEiJ_T0026975.1 MGP_CASTEiJ_G0017259.1 mouse_genomes_project 10 133232372 133242559 + MGP_CASTEiJ_P0026975 Olfr821 protein_coding protein_coding MGP_CASTEiJ_T0026976.1 MGP_CASTEiJ_G0017259.1 mouse_genomes_project 10 133241626 133242559 + MGP_CASTEiJ_P0026976 Olfr821 protein_coding protein_coding MGP_CASTEiJ_T0026022.1 MGP_CASTEiJ_G0016943.1 mouse_genomes_project 10 87040546 87052145 - Hsp90b1 protein_coding retained_intron MGP_CASTEiJ_T0026023.1 MGP_CASTEiJ_G0016943.1 mouse_genomes_project 10 87041419 87055679 - MGP_CASTEiJ_P0026023 Hsp90b1 protein_coding protein_coding MGP_CASTEiJ_T0026024.1 MGP_CASTEiJ_G0016943.1 mouse_genomes_project 10 87042747 87048615 - MGP_CASTEiJ_P0026024 Hsp90b1 protein_coding protein_coding MGP_CASTEiJ_T0026025.1 MGP_CASTEiJ_G0016943.1 mouse_genomes_project 10 87044376 87046059 - Hsp90b1 protein_coding retained_intron MGP_CASTEiJ_T0026026.1 MGP_CASTEiJ_G0016943.1 mouse_genomes_project 10 87052122 87053261 - Hsp90b1 protein_coding retained_intron MGP_CASTEiJ_T0024876.1 MGP_CASTEiJ_G0016662.1 mouse_genomes_project 10 68134123 68195812 + MGP_CASTEiJ_P0024876 Tmem26 protein_coding protein_coding MGP_CASTEiJ_T0024266.1 MGP_CASTEiJ_G0016490.1 mouse_genomes_project 10 37850453 38003324 + MGP_CASTEiJ_P0024266 Fyn protein_coding protein_coding MGP_CASTEiJ_T0024267.1 MGP_CASTEiJ_G0016490.1 mouse_genomes_project 10 37851370 38057845 + MGP_CASTEiJ_P0024267 Fyn protein_coding protein_coding MGP_CASTEiJ_T0024268.1 MGP_CASTEiJ_G0016490.1 mouse_genomes_project 10 37851409 38056885 + MGP_CASTEiJ_P0024268 Fyn protein_coding protein_coding MGP_CASTEiJ_T0024269.1 MGP_CASTEiJ_G0016490.1 mouse_genomes_project 10 37906445 37999477 + MGP_CASTEiJ_P0024269 Fyn protein_coding protein_coding MGP_CASTEiJ_T0024270.1 MGP_CASTEiJ_G0016490.1 mouse_genomes_project 10 37934383 38057838 + MGP_CASTEiJ_P0024270 Fyn protein_coding protein_coding MGP_CASTEiJ_T0024271.1 MGP_CASTEiJ_G0016490.1 mouse_genomes_project 10 37942425 38056817 + MGP_CASTEiJ_P0024271 Fyn protein_coding protein_coding MGP_CASTEiJ_T0024272.1 MGP_CASTEiJ_G0016490.1 mouse_genomes_project 10 37942536 38056817 + MGP_CASTEiJ_P0024272 Fyn protein_coding protein_coding MGP_CASTEiJ_T0024273.1 MGP_CASTEiJ_G0016490.1 mouse_genomes_project 10 38024125 38043778 + Fyn protein_coding processed_transcript MGP_CASTEiJ_T0024476.1 MGP_CASTEiJ_G0016552.1 mouse_genomes_project 10 50741382 50742405 - MGP_CASTEiJ_P0024476 4933411G06Rik protein_coding protein_coding MGP_CASTEiJ_T0012045.1 MGP_CASTEiJ_G0010208.1 mouse_genomes_project 10 15231790 15232730 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0026946.1 MGP_CASTEiJ_G0017237.1 mouse_genomes_project 10 132587467 132588436 + MGP_CASTEiJ_P0026946 protein_coding protein_coding MGP_CASTEiJ_T0009344.1 MGP_CASTEiJ_G0007532.1 mouse_genomes_project 10 61765551 61765602 + Mir7215 miRNA miRNA MGP_CASTEiJ_T0023820.1 MGP_CASTEiJ_G0016343.1 mouse_genomes_project 10 4914503 4946609 + MGP_CASTEiJ_P0023820 Ppil4 protein_coding protein_coding MGP_CASTEiJ_T0023821.1 MGP_CASTEiJ_G0016343.1 mouse_genomes_project 10 4914520 4930810 + Ppil4 protein_coding retained_intron MGP_CASTEiJ_T0023822.1 MGP_CASTEiJ_G0016343.1 mouse_genomes_project 10 4914533 4936351 + MGP_CASTEiJ_P0023822 Ppil4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023823.1 MGP_CASTEiJ_G0016343.1 mouse_genomes_project 10 4921673 4928829 + Ppil4 protein_coding retained_intron MGP_CASTEiJ_T0025170.1 MGP_CASTEiJ_G0016721.1 mouse_genomes_project 10 76771748 76984904 - MGP_CASTEiJ_P0025170 Pcbp3 protein_coding protein_coding MGP_CASTEiJ_T0025171.1 MGP_CASTEiJ_G0016721.1 mouse_genomes_project 10 76771749 76835650 - Pcbp3 protein_coding processed_transcript MGP_CASTEiJ_T0025172.1 MGP_CASTEiJ_G0016721.1 mouse_genomes_project 10 76771749 76838717 - MGP_CASTEiJ_P0025172 Pcbp3 protein_coding protein_coding MGP_CASTEiJ_T0025173.1 MGP_CASTEiJ_G0016721.1 mouse_genomes_project 10 76771751 76985003 - MGP_CASTEiJ_P0025173 Pcbp3 protein_coding protein_coding MGP_CASTEiJ_T0025174.1 MGP_CASTEiJ_G0016721.1 mouse_genomes_project 10 76772123 76809330 - Pcbp3 protein_coding processed_transcript MGP_CASTEiJ_T0025175.1 MGP_CASTEiJ_G0016721.1 mouse_genomes_project 10 76772261 76799855 - MGP_CASTEiJ_P0025175 Pcbp3 protein_coding protein_coding MGP_CASTEiJ_T0025176.1 MGP_CASTEiJ_G0016721.1 mouse_genomes_project 10 76772381 76839302 - MGP_CASTEiJ_P0025176 Pcbp3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025177.1 MGP_CASTEiJ_G0016721.1 mouse_genomes_project 10 76773197 76828155 - MGP_CASTEiJ_P0025177 Pcbp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025178.1 MGP_CASTEiJ_G0016721.1 mouse_genomes_project 10 76801235 76927002 - Pcbp3 protein_coding processed_transcript MGP_CASTEiJ_T0025179.1 MGP_CASTEiJ_G0016721.1 mouse_genomes_project 10 76809313 76830848 - Pcbp3 protein_coding processed_transcript MGP_CASTEiJ_T0026132.1 MGP_CASTEiJ_G0016969.1 mouse_genomes_project 10 90226224 90247906 - MGP_CASTEiJ_P0026132 Actr6 protein_coding protein_coding MGP_CASTEiJ_T0025997.1 MGP_CASTEiJ_G0016937.1 mouse_genomes_project 10 86225513 86245108 - MGP_CASTEiJ_P0025997 Rtcb protein_coding protein_coding MGP_CASTEiJ_T0025998.1 MGP_CASTEiJ_G0016937.1 mouse_genomes_project 10 86236562 86243464 - Rtcb protein_coding retained_intron MGP_CASTEiJ_T0024519.1 MGP_CASTEiJ_G0016569.1 mouse_genomes_project 10 55375566 55388314 + MGP_CASTEiJ_P0024519 Gja1 protein_coding protein_coding MGP_CASTEiJ_T0026104.1 MGP_CASTEiJ_G0016962.1 mouse_genomes_project 10 89199240 89278281 - MGP_CASTEiJ_P0026104 Utp20 protein_coding protein_coding MGP_CASTEiJ_T0025897.1 MGP_CASTEiJ_G0016909.1 mouse_genomes_project 10 82787356 82809332 + MGP_CASTEiJ_P0025897 Tdg protein_coding protein_coding MGP_CASTEiJ_T0025898.1 MGP_CASTEiJ_G0016909.1 mouse_genomes_project 10 82787373 82798805 + Tdg protein_coding processed_transcript MGP_CASTEiJ_T0025899.1 MGP_CASTEiJ_G0016909.1 mouse_genomes_project 10 82788161 82803309 + MGP_CASTEiJ_P0025899 Tdg protein_coding protein_coding MGP_CASTEiJ_T0025900.1 MGP_CASTEiJ_G0016909.1 mouse_genomes_project 10 82798622 82803325 + Tdg protein_coding retained_intron MGP_CASTEiJ_T0025901.1 MGP_CASTEiJ_G0016909.1 mouse_genomes_project 10 82798923 82806581 + MGP_CASTEiJ_P0025901 Tdg protein_coding protein_coding MGP_CASTEiJ_T0025902.1 MGP_CASTEiJ_G0016909.1 mouse_genomes_project 10 82803042 82803681 + Tdg protein_coding retained_intron MGP_CASTEiJ_T0025903.1 MGP_CASTEiJ_G0016909.1 mouse_genomes_project 10 82803457 82806101 + Tdg protein_coding retained_intron MGP_CASTEiJ_T0025904.1 MGP_CASTEiJ_G0016909.1 mouse_genomes_project 10 82805403 82806739 + Tdg protein_coding retained_intron MGP_CASTEiJ_T0098312.1 MGP_CASTEiJ_G0035243.1 mouse_genomes_project 10 57538276 57538845 - pseudogene pseudogene MGP_CASTEiJ_T0025212.1 MGP_CASTEiJ_G0016729.1 mouse_genomes_project 10 77591769 77634688 + MGP_CASTEiJ_P0025212 Itgb2 protein_coding protein_coding MGP_CASTEiJ_T0025213.1 MGP_CASTEiJ_G0016729.1 mouse_genomes_project 10 77591863 77610164 + MGP_CASTEiJ_P0025213 Itgb2 protein_coding protein_coding MGP_CASTEiJ_T0025214.1 MGP_CASTEiJ_G0016729.1 mouse_genomes_project 10 77591886 77611642 + MGP_CASTEiJ_P0025214 Itgb2 protein_coding protein_coding MGP_CASTEiJ_T0025215.1 MGP_CASTEiJ_G0016729.1 mouse_genomes_project 10 77591890 77634624 + MGP_CASTEiJ_P0025215 Itgb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025216.1 MGP_CASTEiJ_G0016729.1 mouse_genomes_project 10 77591896 77634710 + MGP_CASTEiJ_P0025216 Itgb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026955.1 MGP_CASTEiJ_G0017243.1 mouse_genomes_project 10 132758294 132817321 - MGP_CASTEiJ_P0026955 Olfr784 protein_coding protein_coding MGP_CASTEiJ_T0023935.1 MGP_CASTEiJ_G0016370.1 mouse_genomes_project 10 11723407 11876293 - MGP_CASTEiJ_P0023935 Adgrg6 protein_coding protein_coding MGP_CASTEiJ_T0023936.1 MGP_CASTEiJ_G0016370.1 mouse_genomes_project 10 11726154 11876411 - MGP_CASTEiJ_P0023936 Adgrg6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0005949.1 MGP_CASTEiJ_G0004992.1 mouse_genomes_project 10 78019517 78022191 + 1700009J07Rik lincRNA lincRNA MGP_CASTEiJ_T0005950.1 MGP_CASTEiJ_G0004992.1 mouse_genomes_project 10 78019520 78022188 + 1700009J07Rik lincRNA lincRNA MGP_CASTEiJ_T0005951.1 MGP_CASTEiJ_G0004992.1 mouse_genomes_project 10 78019528 78020612 + 1700009J07Rik lincRNA lincRNA MGP_CASTEiJ_T0024479.1 MGP_CASTEiJ_G0016554.1 mouse_genomes_project 10 51018817 51160267 - MGP_CASTEiJ_P0024479 Ros1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024480.1 MGP_CASTEiJ_G0016554.1 mouse_genomes_project 10 51019022 51160555 - MGP_CASTEiJ_P0024480 Ros1 protein_coding protein_coding MGP_CASTEiJ_T0024481.1 MGP_CASTEiJ_G0016554.1 mouse_genomes_project 10 51019112 51160267 - MGP_CASTEiJ_P0024481 Ros1 protein_coding protein_coding MGP_CASTEiJ_T0024482.1 MGP_CASTEiJ_G0016554.1 mouse_genomes_project 10 51019112 51160267 - MGP_CASTEiJ_P0024482 Ros1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026659.1 MGP_CASTEiJ_G0017125.1 mouse_genomes_project 10 129889427 129895460 + MGP_CASTEiJ_P0026659 Cyp27b1 protein_coding protein_coding MGP_CASTEiJ_T0026660.1 MGP_CASTEiJ_G0017125.1 mouse_genomes_project 10 129889427 129895497 + MGP_CASTEiJ_P0026660 Cyp27b1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026661.1 MGP_CASTEiJ_G0017125.1 mouse_genomes_project 10 129889848 129891057 + Cyp27b1 protein_coding processed_transcript MGP_CASTEiJ_T0101509.1 MGP_CASTEiJ_G0038408.1 mouse_genomes_project 10 119732876 119734406 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101510.1 MGP_CASTEiJ_G0038408.1 mouse_genomes_project 10 119733249 119733812 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0026288.1 MGP_CASTEiJ_G0017000.1 mouse_genomes_project 10 96384726 96401684 - MGP_CASTEiJ_P0026288 Nudt4 protein_coding protein_coding MGP_CASTEiJ_T0026506.1 MGP_CASTEiJ_G0017083.1 mouse_genomes_project 10 119458089 119490030 - MGP_CASTEiJ_P0026506 Cpsf6 protein_coding protein_coding MGP_CASTEiJ_T0026507.1 MGP_CASTEiJ_G0017083.1 mouse_genomes_project 10 119462468 119490033 - MGP_CASTEiJ_P0026507 Cpsf6 protein_coding protein_coding MGP_CASTEiJ_T0026508.1 MGP_CASTEiJ_G0017083.1 mouse_genomes_project 10 119462471 119489989 - MGP_CASTEiJ_P0026508 Cpsf6 protein_coding protein_coding MGP_CASTEiJ_T0026509.1 MGP_CASTEiJ_G0017083.1 mouse_genomes_project 10 119462803 119474378 - MGP_CASTEiJ_P0026509 Cpsf6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026510.1 MGP_CASTEiJ_G0017083.1 mouse_genomes_project 10 119464685 119490028 - MGP_CASTEiJ_P0026510 Cpsf6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026511.1 MGP_CASTEiJ_G0017083.1 mouse_genomes_project 10 119467256 119489988 - MGP_CASTEiJ_P0026511 Cpsf6 protein_coding protein_coding MGP_CASTEiJ_T0026512.1 MGP_CASTEiJ_G0017083.1 mouse_genomes_project 10 119468983 119469514 - MGP_CASTEiJ_P0026512 Cpsf6 protein_coding protein_coding MGP_CASTEiJ_T0026513.1 MGP_CASTEiJ_G0017083.1 mouse_genomes_project 10 119472332 119476668 - Cpsf6 protein_coding retained_intron MGP_CASTEiJ_T0026514.1 MGP_CASTEiJ_G0017083.1 mouse_genomes_project 10 119479426 119493076 - MGP_CASTEiJ_P0026514 Cpsf6 protein_coding protein_coding MGP_CASTEiJ_T0025479.1 MGP_CASTEiJ_G0016811.1 mouse_genomes_project 10 80239762 80286832 - MGP_CASTEiJ_P0025479 Sbno2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025480.1 MGP_CASTEiJ_G0016811.1 mouse_genomes_project 10 80240188 80286840 - MGP_CASTEiJ_P0025480 Sbno2 protein_coding protein_coding MGP_CASTEiJ_T0100399.1 MGP_CASTEiJ_G0037312.1 mouse_genomes_project 10 119290564 119290641 - Gm26311 snoRNA snoRNA MGP_CASTEiJ_T0009355.1 MGP_CASTEiJ_G0007543.1 mouse_genomes_project 10 80474872 80474941 + Mir6911 miRNA miRNA MGP_CASTEiJ_T0023956.1 MGP_CASTEiJ_G0016377.1 mouse_genomes_project 10 15444411 15455951 - MGP_CASTEiJ_P0023956 Abracl protein_coding protein_coding MGP_CASTEiJ_T0026539.1 MGP_CASTEiJ_G0017091.1 mouse_genomes_project 10 120650188 120655027 + MGP_CASTEiJ_P0026539 Ifng protein_coding protein_coding MGP_CASTEiJ_T0099194.1 MGP_CASTEiJ_G0036107.1 mouse_genomes_project 10 91581448 91581552 + Gm25390 snRNA snRNA MGP_CASTEiJ_T0005947.1 MGP_CASTEiJ_G0004990.1 mouse_genomes_project 10 72996667 73119319 - Gm15398 lincRNA lincRNA MGP_CASTEiJ_T0025092.1 MGP_CASTEiJ_G0016692.1 mouse_genomes_project 10 75537275 75544661 - MGP_CASTEiJ_P0025092 Susd2 protein_coding protein_coding MGP_CASTEiJ_T0025093.1 MGP_CASTEiJ_G0016692.1 mouse_genomes_project 10 75537275 75544661 - MGP_CASTEiJ_P0025093 Susd2 protein_coding protein_coding MGP_CASTEiJ_T0010954.1 MGP_CASTEiJ_G0009142.1 mouse_genomes_project 10 95747962 95748266 + Gm25266 misc_RNA misc_RNA MGP_CASTEiJ_T0099210.1 MGP_CASTEiJ_G0036123.1 mouse_genomes_project 10 131313528 131313634 - Gm23241 snRNA snRNA MGP_CASTEiJ_T0012053.1 MGP_CASTEiJ_G0010216.1 mouse_genomes_project 10 29730927 29731540 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0026777.1 MGP_CASTEiJ_G0017164.1 mouse_genomes_project 10 130839917 130846041 - MGP_CASTEiJ_P0026777 Rdh7 protein_coding protein_coding MGP_CASTEiJ_T0026778.1 MGP_CASTEiJ_G0017164.1 mouse_genomes_project 10 130844165 130845023 - Rdh7 protein_coding processed_transcript MGP_CASTEiJ_T0012074.1 MGP_CASTEiJ_G0010237.1 mouse_genomes_project 10 60252872 60253237 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024091.1 MGP_CASTEiJ_G0016426.1 mouse_genomes_project 10 21801781 21803039 + MGP_CASTEiJ_P0024091 protein_coding protein_coding MGP_CASTEiJ_T0025129.1 MGP_CASTEiJ_G0016709.1 mouse_genomes_project 10 76173947 76204234 - MGP_CASTEiJ_P0025129 Prmt2 protein_coding protein_coding MGP_CASTEiJ_T0025130.1 MGP_CASTEiJ_G0016709.1 mouse_genomes_project 10 76173952 76204206 - MGP_CASTEiJ_P0025130 Prmt2 protein_coding protein_coding MGP_CASTEiJ_T0025131.1 MGP_CASTEiJ_G0016709.1 mouse_genomes_project 10 76173957 76204199 - MGP_CASTEiJ_P0025131 Prmt2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025132.1 MGP_CASTEiJ_G0016709.1 mouse_genomes_project 10 76173957 76204205 - MGP_CASTEiJ_P0025132 Prmt2 protein_coding protein_coding MGP_CASTEiJ_T0025133.1 MGP_CASTEiJ_G0016709.1 mouse_genomes_project 10 76174700 76204226 - MGP_CASTEiJ_P0025133 Prmt2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025134.1 MGP_CASTEiJ_G0016709.1 mouse_genomes_project 10 76175138 76177575 - Prmt2 protein_coding retained_intron MGP_CASTEiJ_T0025135.1 MGP_CASTEiJ_G0016709.1 mouse_genomes_project 10 76175164 76178265 - Prmt2 protein_coding processed_transcript MGP_CASTEiJ_T0026287.1 MGP_CASTEiJ_G0016999.1 mouse_genomes_project 10 96313137 96333522 - MGP_CASTEiJ_P0026287 Mrpl42 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026983.1 MGP_CASTEiJ_G0017265.1 mouse_genomes_project 10 133412004 133413062 - MGP_CASTEiJ_P0026983 Olfr827 protein_coding protein_coding MGP_CASTEiJ_T0099180.1 MGP_CASTEiJ_G0036093.1 mouse_genomes_project 10 63512247 63512355 - Gm23854 snRNA snRNA MGP_CASTEiJ_T0026676.1 MGP_CASTEiJ_G0017131.1 mouse_genomes_project 10 130022410 130029589 + MGP_CASTEiJ_P0026676 B4galnt1 protein_coding protein_coding MGP_CASTEiJ_T0025768.1 MGP_CASTEiJ_G0016883.1 mouse_genomes_project 10 81653499 81657948 - MGP_CASTEiJ_P0025768 Hmg20b protein_coding protein_coding MGP_CASTEiJ_T0025769.1 MGP_CASTEiJ_G0016883.1 mouse_genomes_project 10 81653502 81657837 - Hmg20b protein_coding retained_intron MGP_CASTEiJ_T0025770.1 MGP_CASTEiJ_G0016883.1 mouse_genomes_project 10 81653502 81657894 - MGP_CASTEiJ_P0025770 Hmg20b protein_coding protein_coding MGP_CASTEiJ_T0025771.1 MGP_CASTEiJ_G0016883.1 mouse_genomes_project 10 81653502 81657892 - MGP_CASTEiJ_P0025771 Hmg20b protein_coding protein_coding MGP_CASTEiJ_T0025772.1 MGP_CASTEiJ_G0016883.1 mouse_genomes_project 10 81653502 81657659 - MGP_CASTEiJ_P0025772 Hmg20b protein_coding protein_coding MGP_CASTEiJ_T0025773.1 MGP_CASTEiJ_G0016883.1 mouse_genomes_project 10 81653503 81654182 - Hmg20b protein_coding retained_intron MGP_CASTEiJ_T0025774.1 MGP_CASTEiJ_G0016883.1 mouse_genomes_project 10 81653503 81657795 - MGP_CASTEiJ_P0025774 Hmg20b protein_coding protein_coding MGP_CASTEiJ_T0025775.1 MGP_CASTEiJ_G0016883.1 mouse_genomes_project 10 81654210 81656553 - MGP_CASTEiJ_P0025775 Hmg20b protein_coding protein_coding MGP_CASTEiJ_T0025776.1 MGP_CASTEiJ_G0016883.1 mouse_genomes_project 10 81654448 81657911 - MGP_CASTEiJ_P0025776 Hmg20b protein_coding protein_coding MGP_CASTEiJ_T0025777.1 MGP_CASTEiJ_G0016883.1 mouse_genomes_project 10 81654449 81655374 - Hmg20b protein_coding retained_intron MGP_CASTEiJ_T0025778.1 MGP_CASTEiJ_G0016883.1 mouse_genomes_project 10 81656471 81657787 - Hmg20b protein_coding processed_transcript MGP_CASTEiJ_T0025779.1 MGP_CASTEiJ_G0016883.1 mouse_genomes_project 10 81656513 81657785 - Hmg20b protein_coding retained_intron MGP_CASTEiJ_T0025780.1 MGP_CASTEiJ_G0016883.1 mouse_genomes_project 10 81656523 81657912 - Hmg20b protein_coding processed_transcript MGP_CASTEiJ_T0098315.1 MGP_CASTEiJ_G0035246.1 mouse_genomes_project 10 69825773 69828287 - pseudogene pseudogene MGP_CASTEiJ_T0025388.1 MGP_CASTEiJ_G0016787.1 mouse_genomes_project 10 79896257 79898064 + MGP_CASTEiJ_P0025388 Fgf22 protein_coding protein_coding MGP_CASTEiJ_T0005913.1 MGP_CASTEiJ_G0004963.1 mouse_genomes_project 10 14322565 14479403 - Gm20125 lincRNA lincRNA MGP_CASTEiJ_T0025575.1 MGP_CASTEiJ_G0016828.1 mouse_genomes_project 10 80543698 80544673 - Adamtsl5 protein_coding processed_transcript MGP_CASTEiJ_T0025576.1 MGP_CASTEiJ_G0016828.1 mouse_genomes_project 10 80544385 80558724 - Adamtsl5 protein_coding retained_intron MGP_CASTEiJ_T0025577.1 MGP_CASTEiJ_G0016828.1 mouse_genomes_project 10 80544408 80550707 - Adamtsl5 protein_coding retained_intron MGP_CASTEiJ_T0025578.1 MGP_CASTEiJ_G0016828.1 mouse_genomes_project 10 80545428 80558724 - Adamtsl5 protein_coding retained_intron MGP_CASTEiJ_T0025579.1 MGP_CASTEiJ_G0016828.1 mouse_genomes_project 10 80545428 80558724 - MGP_CASTEiJ_P0025579 Adamtsl5 protein_coding protein_coding MGP_CASTEiJ_T0025580.1 MGP_CASTEiJ_G0016828.1 mouse_genomes_project 10 80547326 80558724 - MGP_CASTEiJ_P0025580 Adamtsl5 protein_coding protein_coding MGP_CASTEiJ_T0025581.1 MGP_CASTEiJ_G0016828.1 mouse_genomes_project 10 80547593 80549824 - Adamtsl5 protein_coding processed_transcript MGP_CASTEiJ_T0010938.1 MGP_CASTEiJ_G0009126.1 mouse_genomes_project 10 39475340 39475583 - Gm22948 misc_RNA misc_RNA MGP_CASTEiJ_T0025829.1 MGP_CASTEiJ_G0016894.1 mouse_genomes_project 10 81857191 81875834 - MGP_CASTEiJ_P0025829 Gna11 protein_coding protein_coding MGP_CASTEiJ_T0025830.1 MGP_CASTEiJ_G0016894.1 mouse_genomes_project 10 81858754 81860529 - Gna11 protein_coding retained_intron MGP_CASTEiJ_T0025831.1 MGP_CASTEiJ_G0016894.1 mouse_genomes_project 10 81863789 81865795 - Gna11 protein_coding retained_intron MGP_CASTEiJ_T0025448.1 MGP_CASTEiJ_G0016804.1 mouse_genomes_project 10 80146509 80153023 + MGP_CASTEiJ_P0025448 Grin3b protein_coding protein_coding MGP_CASTEiJ_T0025449.1 MGP_CASTEiJ_G0016804.1 mouse_genomes_project 10 80149543 80152543 + MGP_CASTEiJ_P0025449 Grin3b protein_coding protein_coding MGP_CASTEiJ_T0025450.1 MGP_CASTEiJ_G0016804.1 mouse_genomes_project 10 80150215 80152957 + MGP_CASTEiJ_P0025450 Grin3b protein_coding protein_coding MGP_CASTEiJ_T0026393.1 MGP_CASTEiJ_G0017042.1 mouse_genomes_project 10 111109062 111538353 - MGP_CASTEiJ_P0026393 Nav3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026394.1 MGP_CASTEiJ_G0017042.1 mouse_genomes_project 10 111180917 111349923 - MGP_CASTEiJ_P0026394 Nav3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026395.1 MGP_CASTEiJ_G0017042.1 mouse_genomes_project 10 111182311 111538467 - MGP_CASTEiJ_P0026395 Nav3 protein_coding protein_coding MGP_CASTEiJ_T0026396.1 MGP_CASTEiJ_G0017042.1 mouse_genomes_project 10 111182311 111340066 - MGP_CASTEiJ_P0026396 Nav3 protein_coding protein_coding MGP_CASTEiJ_T0026397.1 MGP_CASTEiJ_G0017042.1 mouse_genomes_project 10 111221388 111232192 - Nav3 protein_coding processed_transcript MGP_CASTEiJ_T0026398.1 MGP_CASTEiJ_G0017042.1 mouse_genomes_project 10 111264592 111275944 - MGP_CASTEiJ_P0026398 Nav3 protein_coding protein_coding MGP_CASTEiJ_T0026399.1 MGP_CASTEiJ_G0017042.1 mouse_genomes_project 10 111402217 111431264 - Nav3 protein_coding retained_intron MGP_CASTEiJ_T0026400.1 MGP_CASTEiJ_G0017042.1 mouse_genomes_project 10 111425350 112002250 - Nav3 protein_coding retained_intron MGP_CASTEiJ_T0024296.1 MGP_CASTEiJ_G0016498.1 mouse_genomes_project 10 38571546 38677252 - MGP_CASTEiJ_P0024296 Slc16a10 protein_coding protein_coding MGP_CASTEiJ_T0025244.1 MGP_CASTEiJ_G0016739.1 mouse_genomes_project 10 77902666 77903474 - MGP_CASTEiJ_P0025244 Gm19668 protein_coding protein_coding MGP_CASTEiJ_T0024108.1 MGP_CASTEiJ_G0016434.1 mouse_genomes_project 10 22704277 22752554 + MGP_CASTEiJ_P0024108 Med23 protein_coding protein_coding MGP_CASTEiJ_T0024109.1 MGP_CASTEiJ_G0016434.1 mouse_genomes_project 10 22704328 22733195 + Med23 protein_coding retained_intron MGP_CASTEiJ_T0024110.1 MGP_CASTEiJ_G0016434.1 mouse_genomes_project 10 22704328 22745633 + MGP_CASTEiJ_P0024110 Med23 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024111.1 MGP_CASTEiJ_G0016434.1 mouse_genomes_project 10 22704338 22752332 + MGP_CASTEiJ_P0024111 Med23 protein_coding protein_coding MGP_CASTEiJ_T0024112.1 MGP_CASTEiJ_G0016434.1 mouse_genomes_project 10 22704389 22737370 + Med23 protein_coding processed_transcript MGP_CASTEiJ_T0024113.1 MGP_CASTEiJ_G0016434.1 mouse_genomes_project 10 22704601 22712830 + MGP_CASTEiJ_P0024113 Med23 protein_coding protein_coding MGP_CASTEiJ_T0024114.1 MGP_CASTEiJ_G0016434.1 mouse_genomes_project 10 22704935 22710037 + Med23 protein_coding retained_intron MGP_CASTEiJ_T0024115.1 MGP_CASTEiJ_G0016434.1 mouse_genomes_project 10 22711313 22731470 + MGP_CASTEiJ_P0024115 Med23 protein_coding protein_coding MGP_CASTEiJ_T0024116.1 MGP_CASTEiJ_G0016434.1 mouse_genomes_project 10 22727332 22751891 + MGP_CASTEiJ_P0024116 Med23 protein_coding protein_coding MGP_CASTEiJ_T0024117.1 MGP_CASTEiJ_G0016434.1 mouse_genomes_project 10 22729845 22731462 + Med23 protein_coding retained_intron MGP_CASTEiJ_T0024490.1 MGP_CASTEiJ_G0016558.1 mouse_genomes_project 10 51362657 51375471 + MGP_CASTEiJ_P0024490 Nepn protein_coding protein_coding MGP_CASTEiJ_T0024491.1 MGP_CASTEiJ_G0016558.1 mouse_genomes_project 10 51366387 51379059 + MGP_CASTEiJ_P0024491 Nepn protein_coding protein_coding MGP_CASTEiJ_T0009327.1 MGP_CASTEiJ_G0007515.1 mouse_genomes_project 10 20465730 20465791 - Mir7663 miRNA miRNA MGP_CASTEiJ_T0023688.1 MGP_CASTEiJ_G0016315.1 mouse_genomes_project 10 334853 440471 + MGP_CASTEiJ_P0023688 Ppp1r14c protein_coding protein_coding MGP_CASTEiJ_T0026972.1 MGP_CASTEiJ_G0017256.1 mouse_genomes_project 10 133171216 133172293 - MGP_CASTEiJ_P0026972 protein_coding protein_coding MGP_CASTEiJ_T0024047.1 MGP_CASTEiJ_G0016405.1 mouse_genomes_project 10 19240146 19272134 + MGP_CASTEiJ_P0024047 1700020N01Rik protein_coding protein_coding MGP_CASTEiJ_T0024048.1 MGP_CASTEiJ_G0016405.1 mouse_genomes_project 10 19263404 19271523 + 1700020N01Rik protein_coding processed_transcript MGP_CASTEiJ_T0024118.1 MGP_CASTEiJ_G0016435.1 mouse_genomes_project 10 22754078 22767328 - MGP_CASTEiJ_P0024118 Arg1 protein_coding protein_coding MGP_CASTEiJ_T0101719.1 MGP_CASTEiJ_G0038534.1 mouse_genomes_project 10 130749198 130785196 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101720.1 MGP_CASTEiJ_G0038534.1 mouse_genomes_project 10 130749198 130785191 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0099166.1 MGP_CASTEiJ_G0036079.1 mouse_genomes_project 10 38256685 38256801 + Gm22105 snRNA snRNA MGP_CASTEiJ_T0012079.1 MGP_CASTEiJ_G0010242.1 mouse_genomes_project 10 65951477 65951764 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0026350.1 MGP_CASTEiJ_G0017025.1 mouse_genomes_project 10 103685835 103724897 + MGP_CASTEiJ_P0026350 Rassf9 protein_coding protein_coding MGP_CASTEiJ_T0009347.1 MGP_CASTEiJ_G0007535.1 mouse_genomes_project 10 77714956 77715040 + Mir1930 miRNA miRNA MGP_CASTEiJ_T0012104.1 MGP_CASTEiJ_G0010267.1 mouse_genomes_project 10 124600107 124600716 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0026447.1 MGP_CASTEiJ_G0017063.1 mouse_genomes_project 10 117292085 117309789 - MGP_CASTEiJ_P0026447 Thap2 protein_coding protein_coding MGP_CASTEiJ_T0024101.1 MGP_CASTEiJ_G0016432.1 mouse_genomes_project 10 22468998 22541469 - MGP_CASTEiJ_P0024101 Enpp1 protein_coding protein_coding MGP_CASTEiJ_T0024102.1 MGP_CASTEiJ_G0016432.1 mouse_genomes_project 10 22472514 22541470 - MGP_CASTEiJ_P0024102 Enpp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024103.1 MGP_CASTEiJ_G0016432.1 mouse_genomes_project 10 22472847 22541228 - MGP_CASTEiJ_P0024103 Enpp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024104.1 MGP_CASTEiJ_G0016432.1 mouse_genomes_project 10 22472885 22541302 - MGP_CASTEiJ_P0024104 Enpp1 protein_coding protein_coding MGP_CASTEiJ_T0024105.1 MGP_CASTEiJ_G0016432.1 mouse_genomes_project 10 22479683 22541308 - Enpp1 protein_coding retained_intron MGP_CASTEiJ_T0024106.1 MGP_CASTEiJ_G0016432.1 mouse_genomes_project 10 22500747 22507556 - Enpp1 protein_coding retained_intron MGP_CASTEiJ_T0000796.1 MGP_CASTEiJ_G0000736.1 mouse_genomes_project 10 121095441 121098178 + TEC TEC MGP_CASTEiJ_T0024970.1 MGP_CASTEiJ_G0016674.1 mouse_genomes_project 10 70837471 70869094 - MGP_CASTEiJ_P0024970 Ube2d1 protein_coding protein_coding MGP_CASTEiJ_T0024971.1 MGP_CASTEiJ_G0016674.1 mouse_genomes_project 10 70838168 70839486 - Ube2d1 protein_coding retained_intron MGP_CASTEiJ_T0024972.1 MGP_CASTEiJ_G0016674.1 mouse_genomes_project 10 70840311 70869050 - Ube2d1 protein_coding retained_intron MGP_CASTEiJ_T0025750.1 MGP_CASTEiJ_G0016876.1 mouse_genomes_project 10 81565578 81567748 - MGP_CASTEiJ_P0025750 Mrpl54 protein_coding protein_coding MGP_CASTEiJ_T0025751.1 MGP_CASTEiJ_G0016876.1 mouse_genomes_project 10 81566295 81567738 - Mrpl54 protein_coding retained_intron MGP_CASTEiJ_T0026892.1 MGP_CASTEiJ_G0017203.1 mouse_genomes_project 10 131780434 131805639 - MGP_CASTEiJ_P0026892 Dgka protein_coding protein_coding MGP_CASTEiJ_T0026893.1 MGP_CASTEiJ_G0017203.1 mouse_genomes_project 10 131792321 131799375 - MGP_CASTEiJ_P0026893 Dgka protein_coding unknown_likely_coding MGP_CASTEiJ_T0005983.1 MGP_CASTEiJ_G0005010.1 mouse_genomes_project 10 96616430 96672644 + 4732465J04Rik lincRNA lincRNA MGP_CASTEiJ_T0005984.1 MGP_CASTEiJ_G0005010.1 mouse_genomes_project 10 96651725 96673049 + 4732465J04Rik lincRNA lincRNA MGP_CASTEiJ_T0005910.1 MGP_CASTEiJ_G0004961.1 mouse_genomes_project 10 10151434 10158923 - B230208H11Rik lincRNA lincRNA MGP_CASTEiJ_T0005911.1 MGP_CASTEiJ_G0004961.1 mouse_genomes_project 10 10151465 10158913 - B230208H11Rik lincRNA lincRNA MGP_CASTEiJ_T0026931.1 MGP_CASTEiJ_G0017223.1 mouse_genomes_project 10 132245127 132246081 - MGP_CASTEiJ_P0026931 Olfr771 protein_coding protein_coding MGP_CASTEiJ_T0012096.1 MGP_CASTEiJ_G0010259.1 mouse_genomes_project 10 106788452 106789376 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024612.1 MGP_CASTEiJ_G0016597.1 mouse_genomes_project 10 58929812 58955516 + Spock2 protein_coding retained_intron MGP_CASTEiJ_T0024613.1 MGP_CASTEiJ_G0016597.1 mouse_genomes_project 10 58929812 58968743 + MGP_CASTEiJ_P0024613 Spock2 protein_coding protein_coding MGP_CASTEiJ_T0024614.1 MGP_CASTEiJ_G0016597.1 mouse_genomes_project 10 58930061 58961691 + MGP_CASTEiJ_P0024614 Spock2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024615.1 MGP_CASTEiJ_G0016597.1 mouse_genomes_project 10 58930061 58967451 + MGP_CASTEiJ_P0024615 Spock2 protein_coding protein_coding MGP_CASTEiJ_T0100388.1 MGP_CASTEiJ_G0037301.1 mouse_genomes_project 10 98740345 98740473 - Gm25658 snoRNA snoRNA MGP_CASTEiJ_T0012043.1 MGP_CASTEiJ_G0010206.1 mouse_genomes_project 10 8605389 8606117 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0025111.1 MGP_CASTEiJ_G0016702.1 mouse_genomes_project 10 75817218 75843154 - MGP_CASTEiJ_P0025111 Smarcb1 protein_coding protein_coding MGP_CASTEiJ_T0025112.1 MGP_CASTEiJ_G0016702.1 mouse_genomes_project 10 75817222 75834260 - Smarcb1 protein_coding retained_intron MGP_CASTEiJ_T0025113.1 MGP_CASTEiJ_G0016702.1 mouse_genomes_project 10 75817224 75838111 - Smarcb1 protein_coding retained_intron MGP_CASTEiJ_T0025114.1 MGP_CASTEiJ_G0016702.1 mouse_genomes_project 10 75817226 75843151 - MGP_CASTEiJ_P0025114 Smarcb1 protein_coding protein_coding MGP_CASTEiJ_T0025115.1 MGP_CASTEiJ_G0016702.1 mouse_genomes_project 10 75817973 75843126 - MGP_CASTEiJ_P0025115 Smarcb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025116.1 MGP_CASTEiJ_G0016702.1 mouse_genomes_project 10 75830364 75836703 - MGP_CASTEiJ_P0025116 Smarcb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025457.1 MGP_CASTEiJ_G0016806.1 mouse_genomes_project 10 80165413 80175288 + MGP_CASTEiJ_P0025457 Cnn2 protein_coding protein_coding MGP_CASTEiJ_T0025458.1 MGP_CASTEiJ_G0016806.1 mouse_genomes_project 10 80165452 80173897 + MGP_CASTEiJ_P0025458 Cnn2 protein_coding protein_coding MGP_CASTEiJ_T0024074.1 MGP_CASTEiJ_G0016413.1 mouse_genomes_project 10 21524510 21526548 - MGP_CASTEiJ_P0024074 Rps12 protein_coding protein_coding MGP_CASTEiJ_T0026467.1 MGP_CASTEiJ_G0017069.1 mouse_genomes_project 10 118098065 118100318 - MGP_CASTEiJ_P0026467 4933416C03Rik protein_coding protein_coding MGP_CASTEiJ_T0024649.1 MGP_CASTEiJ_G0016603.1 mouse_genomes_project 10 59599481 59641348 - MGP_CASTEiJ_P0024649 protein_coding protein_coding MGP_CASTEiJ_T0024650.1 MGP_CASTEiJ_G0016603.1 mouse_genomes_project 10 59600684 59641349 - MGP_CASTEiJ_P0024650 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024651.1 MGP_CASTEiJ_G0016603.1 mouse_genomes_project 10 59601291 59641431 - MGP_CASTEiJ_P0024651 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024652.1 MGP_CASTEiJ_G0016603.1 mouse_genomes_project 10 59601485 59611122 - protein_coding retained_intron MGP_CASTEiJ_T0024653.1 MGP_CASTEiJ_G0016603.1 mouse_genomes_project 10 59607652 59641360 - protein_coding processed_transcript MGP_CASTEiJ_T0025324.1 MGP_CASTEiJ_G0016765.1 mouse_genomes_project 10 79021462 79026249 + MGP_CASTEiJ_P0025324 protein_coding protein_coding MGP_CASTEiJ_T0025327.1 MGP_CASTEiJ_G0016765.1 mouse_genomes_project 10 79025190 79026300 + MGP_CASTEiJ_P0025327 protein_coding protein_coding MGP_CASTEiJ_T0025035.1 MGP_CASTEiJ_G0016680.1 mouse_genomes_project 10 74816018 74867941 + MGP_CASTEiJ_P0025035 Gnaz protein_coding protein_coding MGP_CASTEiJ_T0025036.1 MGP_CASTEiJ_G0016680.1 mouse_genomes_project 10 74816050 74843327 + Gnaz protein_coding processed_transcript MGP_CASTEiJ_T0025037.1 MGP_CASTEiJ_G0016680.1 mouse_genomes_project 10 74842123 74867930 + MGP_CASTEiJ_P0025037 Gnaz protein_coding protein_coding MGP_CASTEiJ_T0026672.1 MGP_CASTEiJ_G0017128.1 mouse_genomes_project 10 129911647 129914604 - MGP_CASTEiJ_P0026672 Tspan31 protein_coding protein_coding MGP_CASTEiJ_T0026107.1 MGP_CASTEiJ_G0016964.1 mouse_genomes_project 10 89403355 89732345 - MGP_CASTEiJ_P0026107 Ano4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026108.1 MGP_CASTEiJ_G0016964.1 mouse_genomes_project 10 89403356 89732145 - MGP_CASTEiJ_P0026108 Ano4 protein_coding protein_coding MGP_CASTEiJ_T0026109.1 MGP_CASTEiJ_G0016964.1 mouse_genomes_project 10 89403362 89732177 - MGP_CASTEiJ_P0026109 Ano4 protein_coding protein_coding MGP_CASTEiJ_T0026110.1 MGP_CASTEiJ_G0016964.1 mouse_genomes_project 10 89403363 89731848 - MGP_CASTEiJ_P0026110 Ano4 protein_coding protein_coding MGP_CASTEiJ_T0026111.1 MGP_CASTEiJ_G0016964.1 mouse_genomes_project 10 89436410 89453665 - MGP_CASTEiJ_P0026111 Ano4 protein_coding protein_coding MGP_CASTEiJ_T0026112.1 MGP_CASTEiJ_G0016964.1 mouse_genomes_project 10 89448394 89485163 - Ano4 protein_coding processed_transcript MGP_CASTEiJ_T0026113.1 MGP_CASTEiJ_G0016964.1 mouse_genomes_project 10 89475711 89732109 - Ano4 protein_coding retained_intron MGP_CASTEiJ_T0026114.1 MGP_CASTEiJ_G0016964.1 mouse_genomes_project 10 89495202 89824766 - MGP_CASTEiJ_P0026114 Ano4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026115.1 MGP_CASTEiJ_G0016964.1 mouse_genomes_project 10 89534879 89732145 - MGP_CASTEiJ_P0026115 Ano4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026116.1 MGP_CASTEiJ_G0016964.1 mouse_genomes_project 10 89535431 89731684 - MGP_CASTEiJ_P0026116 Ano4 protein_coding protein_coding MGP_CASTEiJ_T0026117.1 MGP_CASTEiJ_G0016964.1 mouse_genomes_project 10 89555722 89793459 - MGP_CASTEiJ_P0026117 Ano4 protein_coding protein_coding MGP_CASTEiJ_T0026118.1 MGP_CASTEiJ_G0016964.1 mouse_genomes_project 10 89815117 89824883 - Ano4 protein_coding processed_transcript MGP_CASTEiJ_T0000780.1 MGP_CASTEiJ_G0000721.1 mouse_genomes_project 10 72977485 72977878 - TEC TEC MGP_CASTEiJ_T0099161.1 MGP_CASTEiJ_G0036074.1 mouse_genomes_project 10 27434253 27434360 + Gm25596 snRNA snRNA MGP_CASTEiJ_T0026281.1 MGP_CASTEiJ_G0016997.1 mouse_genomes_project 10 95981397 96145784 - MGP_CASTEiJ_P0026281 Cradd protein_coding protein_coding MGP_CASTEiJ_T0026977.1 MGP_CASTEiJ_G0017260.1 mouse_genomes_project 10 133247255 133319445 - MGP_CASTEiJ_P0026977 protein_coding protein_coding MGP_CASTEiJ_T0026674.1 MGP_CASTEiJ_G0017130.1 mouse_genomes_project 10 129939267 129969773 - MGP_CASTEiJ_P0026674 Os9 protein_coding protein_coding MGP_CASTEiJ_T0026675.1 MGP_CASTEiJ_G0017130.1 mouse_genomes_project 10 129939267 129969773 - MGP_CASTEiJ_P0026675 Os9 protein_coding protein_coding MGP_CASTEiJ_T0025548.1 MGP_CASTEiJ_G0016822.1 mouse_genomes_project 10 80458354 80477711 + MGP_CASTEiJ_P0025548 protein_coding protein_coding MGP_CASTEiJ_T0025549.1 MGP_CASTEiJ_G0016822.1 mouse_genomes_project 10 80461860 80487035 + MGP_CASTEiJ_P0025549 protein_coding protein_coding MGP_CASTEiJ_T0025550.1 MGP_CASTEiJ_G0016822.1 mouse_genomes_project 10 80461892 80486520 + MGP_CASTEiJ_P0025550 protein_coding protein_coding MGP_CASTEiJ_T0025551.1 MGP_CASTEiJ_G0016822.1 mouse_genomes_project 10 80461950 80487035 + MGP_CASTEiJ_P0025551 protein_coding protein_coding MGP_CASTEiJ_T0025552.1 MGP_CASTEiJ_G0016822.1 mouse_genomes_project 10 80462000 80475085 + protein_coding processed_transcript MGP_CASTEiJ_T0025553.1 MGP_CASTEiJ_G0016822.1 mouse_genomes_project 10 80477128 80482121 + protein_coding retained_intron MGP_CASTEiJ_T0025554.1 MGP_CASTEiJ_G0016822.1 mouse_genomes_project 10 80479572 80481207 + protein_coding retained_intron MGP_CASTEiJ_T0026962.1 MGP_CASTEiJ_G0017249.1 mouse_genomes_project 10 132875274 132878224 + MGP_CASTEiJ_P0026962 Olfr808 protein_coding protein_coding MGP_CASTEiJ_T0026963.1 MGP_CASTEiJ_G0017249.1 mouse_genomes_project 10 132877285 132878224 + MGP_CASTEiJ_P0026963 Olfr808 protein_coding protein_coding MGP_CASTEiJ_T0025055.1 MGP_CASTEiJ_G0016687.1 mouse_genomes_project 10 75288830 75324125 + MGP_CASTEiJ_P0025055 Upb1 protein_coding protein_coding MGP_CASTEiJ_T0025056.1 MGP_CASTEiJ_G0016687.1 mouse_genomes_project 10 75288876 75305974 + Upb1 protein_coding retained_intron MGP_CASTEiJ_T0025057.1 MGP_CASTEiJ_G0016687.1 mouse_genomes_project 10 75291994 75308588 + Upb1 protein_coding retained_intron MGP_CASTEiJ_T0025059.1 MGP_CASTEiJ_G0016687.1 mouse_genomes_project 10 75308994 75311130 + Upb1 protein_coding retained_intron MGP_CASTEiJ_T0009360.1 MGP_CASTEiJ_G0007548.1 mouse_genomes_project 10 81391294 81391354 + Mir5615-2 miRNA miRNA MGP_CASTEiJ_T0099153.1 MGP_CASTEiJ_G0036066.1 mouse_genomes_project 10 2455051 2455158 + Gm23573 snRNA snRNA MGP_CASTEiJ_T0025320.1 MGP_CASTEiJ_G0016762.1 mouse_genomes_project 10 78910482 78918461 - MGP_CASTEiJ_P0025320 Ccdc105 protein_coding protein_coding MGP_CASTEiJ_T0101970.1 MGP_CASTEiJ_G0038695.1 mouse_genomes_project 10 132417327 132420693 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0009325.1 MGP_CASTEiJ_G0007513.1 mouse_genomes_project 10 4959657 4959751 + Mir5104 miRNA miRNA MGP_CASTEiJ_T0009334.1 MGP_CASTEiJ_G0007522.1 mouse_genomes_project 10 43816029 43816140 - Gm24271 miRNA miRNA MGP_CASTEiJ_T0012072.1 MGP_CASTEiJ_G0010235.1 mouse_genomes_project 10 58215329 58215910 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0026958.1 MGP_CASTEiJ_G0017246.1 mouse_genomes_project 10 132816237 132839491 - MGP_CASTEiJ_P0026958 Olfr805 protein_coding protein_coding MGP_CASTEiJ_T0026266.1 MGP_CASTEiJ_G0016993.1 mouse_genomes_project 10 95060981 95065954 - MGP_CASTEiJ_P0026266 Gm4792 protein_coding protein_coding MGP_CASTEiJ_T0026267.1 MGP_CASTEiJ_G0016993.1 mouse_genomes_project 10 95064275 95065858 - Gm4792 protein_coding retained_intron MGP_CASTEiJ_T0026030.1 MGP_CASTEiJ_G0016946.1 mouse_genomes_project 10 87196274 87375085 - MGP_CASTEiJ_P0026030 Stab2 protein_coding protein_coding MGP_CASTEiJ_T0026031.1 MGP_CASTEiJ_G0016946.1 mouse_genomes_project 10 87196397 87247117 - MGP_CASTEiJ_P0026031 Stab2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026032.1 MGP_CASTEiJ_G0016946.1 mouse_genomes_project 10 87226235 87234040 - Stab2 protein_coding retained_intron MGP_CASTEiJ_T0026033.1 MGP_CASTEiJ_G0016946.1 mouse_genomes_project 10 87228204 87240628 - Stab2 protein_coding retained_intron MGP_CASTEiJ_T0026034.1 MGP_CASTEiJ_G0016946.1 mouse_genomes_project 10 87277890 87301593 - Stab2 protein_coding processed_transcript MGP_CASTEiJ_T0026035.1 MGP_CASTEiJ_G0016946.1 mouse_genomes_project 10 87355787 87375072 - Stab2 protein_coding processed_transcript MGP_CASTEiJ_T0026036.1 MGP_CASTEiJ_G0016946.1 mouse_genomes_project 10 87357472 87375082 - Stab2 protein_coding processed_transcript MGP_CASTEiJ_T0025314.1 MGP_CASTEiJ_G0016758.1 mouse_genomes_project 10 78743237 78753240 + MGP_CASTEiJ_P0025314 Ilvbl protein_coding protein_coding MGP_CASTEiJ_T0024850.1 MGP_CASTEiJ_G0016654.1 mouse_genomes_project 10 66570897 66591278 - MGP_CASTEiJ_P0024850 Nrbf2 protein_coding protein_coding MGP_CASTEiJ_T0025321.1 MGP_CASTEiJ_G0016763.1 mouse_genomes_project 10 78948360 78977997 + MGP_CASTEiJ_P0025321 Slc1a6 protein_coding protein_coding MGP_CASTEiJ_T0100363.1 MGP_CASTEiJ_G0037276.1 mouse_genomes_project 10 36644447 36644578 + Gm24889 snoRNA snoRNA MGP_CASTEiJ_T0016390.1 MGP_CASTEiJ_G0014451.1 mouse_genomes_project 10 69729932 69742777 + Mrln processed_transcript lincRNA MGP_CASTEiJ_T0016391.1 MGP_CASTEiJ_G0014451.1 mouse_genomes_project 10 69729935 69746453 + Mrln processed_transcript lincRNA MGP_CASTEiJ_T0016392.1 MGP_CASTEiJ_G0014451.1 mouse_genomes_project 10 69729978 69746322 + Mrln processed_transcript lincRNA MGP_CASTEiJ_T0016393.1 MGP_CASTEiJ_G0014451.1 mouse_genomes_project 10 69729993 69735961 + Mrln processed_transcript lincRNA MGP_CASTEiJ_T0016394.1 MGP_CASTEiJ_G0014451.1 mouse_genomes_project 10 69744421 69746452 + Mrln processed_transcript retained_intron MGP_CASTEiJ_T0026700.1 MGP_CASTEiJ_G0017140.1 mouse_genomes_project 10 130167513 130183543 - MGP_CASTEiJ_P0026700 Mars protein_coding protein_coding MGP_CASTEiJ_T0026701.1 MGP_CASTEiJ_G0017140.1 mouse_genomes_project 10 130167514 130183543 - MGP_CASTEiJ_P0026701 Mars protein_coding protein_coding MGP_CASTEiJ_T0026702.1 MGP_CASTEiJ_G0017140.1 mouse_genomes_project 10 130167517 130183415 - MGP_CASTEiJ_P0026702 Mars protein_coding unknown_likely_coding MGP_CASTEiJ_T0026703.1 MGP_CASTEiJ_G0017140.1 mouse_genomes_project 10 130167518 130183435 - Mars protein_coding retained_intron MGP_CASTEiJ_T0026704.1 MGP_CASTEiJ_G0017140.1 mouse_genomes_project 10 130167518 130169629 - MGP_CASTEiJ_P0026704 Mars protein_coding protein_coding MGP_CASTEiJ_T0026705.1 MGP_CASTEiJ_G0017140.1 mouse_genomes_project 10 130167641 130169540 - Mars protein_coding retained_intron MGP_CASTEiJ_T0026706.1 MGP_CASTEiJ_G0017140.1 mouse_genomes_project 10 130179795 130180737 - Mars protein_coding retained_intron MGP_CASTEiJ_T0024222.1 MGP_CASTEiJ_G0016477.1 mouse_genomes_project 10 32575276 32578352 + MGP_CASTEiJ_P0024222 Tspyl1 protein_coding protein_coding MGP_CASTEiJ_T0026378.1 MGP_CASTEiJ_G0017035.1 mouse_genomes_project 10 108837452 108841229 - MGP_CASTEiJ_P0026378 Myf5 protein_coding protein_coding MGP_CASTEiJ_T0025933.1 MGP_CASTEiJ_G0016917.1 mouse_genomes_project 10 83582861 83591462 + MGP_CASTEiJ_P0025933 D10Wsu102e protein_coding protein_coding MGP_CASTEiJ_T0009341.1 MGP_CASTEiJ_G0007529.1 mouse_genomes_project 10 59868923 59869045 + Mir466j miRNA miRNA MGP_CASTEiJ_T0026439.1 MGP_CASTEiJ_G0017058.1 mouse_genomes_project 10 116244888 116683907 - MGP_CASTEiJ_P0026439 Trhde protein_coding protein_coding MGP_CASTEiJ_T0026440.1 MGP_CASTEiJ_G0017058.1 mouse_genomes_project 10 116417932 116684791 - Trhde protein_coding retained_intron MGP_CASTEiJ_T0026441.1 MGP_CASTEiJ_G0017058.1 mouse_genomes_project 10 116669949 116683854 - Trhde protein_coding retained_intron MGP_CASTEiJ_T0025764.1 MGP_CASTEiJ_G0016880.1 mouse_genomes_project 10 81626021 81631172 + MGP_CASTEiJ_P0025764 Cactin protein_coding protein_coding MGP_CASTEiJ_T0026837.1 MGP_CASTEiJ_G0017180.1 mouse_genomes_project 10 131310272 131312215 - MGP_CASTEiJ_P0026837 Il23a protein_coding protein_coding MGP_CASTEiJ_T0025833.1 MGP_CASTEiJ_G0016896.1 mouse_genomes_project 10 81910706 81926693 + Tle2 protein_coding retained_intron MGP_CASTEiJ_T0025834.1 MGP_CASTEiJ_G0016896.1 mouse_genomes_project 10 81910879 81911976 + MGP_CASTEiJ_P0025834 Tle2 protein_coding protein_coding MGP_CASTEiJ_T0025835.1 MGP_CASTEiJ_G0016896.1 mouse_genomes_project 10 81910884 81916493 + MGP_CASTEiJ_P0025835 Tle2 protein_coding protein_coding MGP_CASTEiJ_T0025836.1 MGP_CASTEiJ_G0016896.1 mouse_genomes_project 10 81911403 81926697 + Tle2 protein_coding retained_intron MGP_CASTEiJ_T0025837.1 MGP_CASTEiJ_G0016896.1 mouse_genomes_project 10 81911405 81926700 + MGP_CASTEiJ_P0025837 Tle2 protein_coding protein_coding MGP_CASTEiJ_T0025838.1 MGP_CASTEiJ_G0016896.1 mouse_genomes_project 10 81911474 81926700 + MGP_CASTEiJ_P0025838 Tle2 protein_coding protein_coding MGP_CASTEiJ_T0025839.1 MGP_CASTEiJ_G0016896.1 mouse_genomes_project 10 81911560 81926695 + Tle2 protein_coding retained_intron MGP_CASTEiJ_T0025840.1 MGP_CASTEiJ_G0016896.1 mouse_genomes_project 10 81911642 81916803 + MGP_CASTEiJ_P0025840 Tle2 protein_coding protein_coding MGP_CASTEiJ_T0025841.1 MGP_CASTEiJ_G0016896.1 mouse_genomes_project 10 81911675 81927073 + MGP_CASTEiJ_P0025841 Tle2 protein_coding protein_coding MGP_CASTEiJ_T0025842.1 MGP_CASTEiJ_G0016896.1 mouse_genomes_project 10 81917001 81923138 + Tle2 protein_coding retained_intron MGP_CASTEiJ_T0025843.1 MGP_CASTEiJ_G0016896.1 mouse_genomes_project 10 81918711 81923095 + Tle2 protein_coding retained_intron MGP_CASTEiJ_T0025844.1 MGP_CASTEiJ_G0016896.1 mouse_genomes_project 10 81923302 81924154 + Tle2 protein_coding retained_intron MGP_CASTEiJ_T0025845.1 MGP_CASTEiJ_G0016896.1 mouse_genomes_project 10 81923636 81926650 + Tle2 protein_coding retained_intron MGP_CASTEiJ_T0025846.1 MGP_CASTEiJ_G0016896.1 mouse_genomes_project 10 81924176 81926700 + MGP_CASTEiJ_P0025846 Tle2 protein_coding protein_coding MGP_CASTEiJ_T0025847.1 MGP_CASTEiJ_G0016896.1 mouse_genomes_project 10 81924206 81926700 + MGP_CASTEiJ_P0025847 Tle2 protein_coding protein_coding MGP_CASTEiJ_T0025848.1 MGP_CASTEiJ_G0016896.1 mouse_genomes_project 10 81924872 81926528 + Tle2 protein_coding retained_intron MGP_CASTEiJ_T0010960.1 MGP_CASTEiJ_G0009148.1 mouse_genomes_project 10 132259528 132259833 - Gm25807 misc_RNA misc_RNA MGP_CASTEiJ_T0025753.1 MGP_CASTEiJ_G0016878.1 mouse_genomes_project 10 81574267 81594400 - MGP_CASTEiJ_P0025753 Tjp3 protein_coding protein_coding MGP_CASTEiJ_T0009384.1 MGP_CASTEiJ_G0007572.1 mouse_genomes_project 10 124092589 124092665 - Gm24330 miRNA miRNA MGP_CASTEiJ_T0099152.1 MGP_CASTEiJ_G0036065.1 mouse_genomes_project 10 1544113 1544273 + Gm22739 snRNA snRNA MGP_CASTEiJ_T0005955.1 MGP_CASTEiJ_G0004996.1 mouse_genomes_project 10 82980788 82992857 + 1700028I16Rik lincRNA lincRNA MGP_CASTEiJ_T0099165.1 MGP_CASTEiJ_G0036078.1 mouse_genomes_project 10 37089967 37090074 - Gm22911 snRNA snRNA MGP_CASTEiJ_T0023937.1 MGP_CASTEiJ_G0016371.1 mouse_genomes_project 10 11984032 12039711 - MGP_CASTEiJ_P0023937 Vta1 protein_coding protein_coding MGP_CASTEiJ_T0023938.1 MGP_CASTEiJ_G0016371.1 mouse_genomes_project 10 11984773 12039651 - MGP_CASTEiJ_P0023938 Vta1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023939.1 MGP_CASTEiJ_G0016371.1 mouse_genomes_project 10 11984940 12000273 - Vta1 protein_coding retained_intron MGP_CASTEiJ_T0023940.1 MGP_CASTEiJ_G0016371.1 mouse_genomes_project 10 11985065 12039610 - MGP_CASTEiJ_P0023940 Vta1 protein_coding protein_coding MGP_CASTEiJ_T0023941.1 MGP_CASTEiJ_G0016371.1 mouse_genomes_project 10 11986660 12015824 - MGP_CASTEiJ_P0023941 Vta1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023942.1 MGP_CASTEiJ_G0016371.1 mouse_genomes_project 10 12016652 12039616 - Vta1 protein_coding processed_transcript MGP_CASTEiJ_T0026134.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 90408061 91541530 + MGP_CASTEiJ_P0026134 protein_coding protein_coding MGP_CASTEiJ_T0026135.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 90408090 91057761 + MGP_CASTEiJ_P0026135 protein_coding protein_coding MGP_CASTEiJ_T0026136.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 90408190 91537705 + MGP_CASTEiJ_P0026136 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026137.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 90408224 91239084 + MGP_CASTEiJ_P0026137 protein_coding protein_coding MGP_CASTEiJ_T0026138.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 90525414 90562891 + protein_coding processed_transcript MGP_CASTEiJ_T0026139.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 90577061 90603597 + protein_coding processed_transcript MGP_CASTEiJ_T0026140.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 90603629 90612801 + MGP_CASTEiJ_P0026140 protein_coding protein_coding MGP_CASTEiJ_T0026141.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91126961 91544461 + MGP_CASTEiJ_P0026141 protein_coding protein_coding MGP_CASTEiJ_T0026142.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91127471 91489610 + MGP_CASTEiJ_P0026142 protein_coding protein_coding MGP_CASTEiJ_T0026143.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91127596 91541569 + MGP_CASTEiJ_P0026143 protein_coding protein_coding MGP_CASTEiJ_T0026144.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91127736 91542604 + MGP_CASTEiJ_P0026144 protein_coding protein_coding MGP_CASTEiJ_T0026145.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91127799 91542835 + MGP_CASTEiJ_P0026145 protein_coding protein_coding MGP_CASTEiJ_T0026146.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91127841 91541523 + MGP_CASTEiJ_P0026146 protein_coding protein_coding MGP_CASTEiJ_T0026147.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91127920 91542173 + MGP_CASTEiJ_P0026147 protein_coding protein_coding MGP_CASTEiJ_T0026148.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91127947 91542797 + MGP_CASTEiJ_P0026148 protein_coding protein_coding MGP_CASTEiJ_T0026149.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91127965 91542835 + MGP_CASTEiJ_P0026149 protein_coding protein_coding MGP_CASTEiJ_T0026150.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91127978 91153279 + protein_coding processed_transcript MGP_CASTEiJ_T0026151.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91127979 91139576 + MGP_CASTEiJ_P0026151 protein_coding protein_coding MGP_CASTEiJ_T0026152.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91127995 91139723 + MGP_CASTEiJ_P0026152 protein_coding protein_coding MGP_CASTEiJ_T0026153.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91128030 91542288 + MGP_CASTEiJ_P0026153 protein_coding protein_coding MGP_CASTEiJ_T0026154.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91128044 91543156 + MGP_CASTEiJ_P0026154 protein_coding protein_coding MGP_CASTEiJ_T0026155.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91128194 91541530 + MGP_CASTEiJ_P0026155 protein_coding protein_coding MGP_CASTEiJ_T0026156.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91128221 91541131 + MGP_CASTEiJ_P0026156 protein_coding protein_coding MGP_CASTEiJ_T0026157.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91392650 91465898 + protein_coding processed_transcript MGP_CASTEiJ_T0026158.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91392926 91541523 + MGP_CASTEiJ_P0026158 protein_coding protein_coding MGP_CASTEiJ_T0026159.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91393058 91542602 + MGP_CASTEiJ_P0026159 protein_coding protein_coding MGP_CASTEiJ_T0026160.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91393272 91542427 + MGP_CASTEiJ_P0026160 protein_coding protein_coding MGP_CASTEiJ_T0026161.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91393310 91483334 + protein_coding processed_transcript MGP_CASTEiJ_T0026162.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91393334 91489635 + protein_coding processed_transcript MGP_CASTEiJ_T0026163.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91463665 91495044 + MGP_CASTEiJ_P0026163 protein_coding protein_coding MGP_CASTEiJ_T0026164.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91463676 91542602 + MGP_CASTEiJ_P0026164 protein_coding protein_coding MGP_CASTEiJ_T0026165.1 MGP_CASTEiJ_G0016971.1 mouse_genomes_project 10 91463756 91541403 + MGP_CASTEiJ_P0026165 protein_coding protein_coding MGP_CASTEiJ_T0024080.1 MGP_CASTEiJ_G0016415.1 mouse_genomes_project 10 21599168 21612271 + MGP_CASTEiJ_P0024080 Vnn3 protein_coding protein_coding MGP_CASTEiJ_T0026501.1 MGP_CASTEiJ_G0017079.1 mouse_genomes_project 10 119153182 119249680 - MGP_CASTEiJ_P0026501 Frs2 protein_coding protein_coding MGP_CASTEiJ_T0026737.1 MGP_CASTEiJ_G0017148.1 mouse_genomes_project 10 130410128 130415416 - MGP_CASTEiJ_P0026737 Shmt2 protein_coding protein_coding MGP_CASTEiJ_T0012108.1 MGP_CASTEiJ_G0010271.1 mouse_genomes_project 10 133315402 133316373 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009361.1 MGP_CASTEiJ_G0007549.1 mouse_genomes_project 10 81572660 81572751 + Mir3057 miRNA miRNA MGP_CASTEiJ_T0100374.1 MGP_CASTEiJ_G0037287.1 mouse_genomes_project 10 57949487 57949613 + Gm23223 snoRNA snoRNA MGP_CASTEiJ_T0005946.1 MGP_CASTEiJ_G0004989.1 mouse_genomes_project 10 70899616 70902644 + Gm20609 lincRNA lincRNA MGP_CASTEiJ_T0098451.1 MGP_CASTEiJ_G0035382.1 mouse_genomes_project 10 95621355 95621482 - Gm24186 rRNA rRNA MGP_CASTEiJ_T0026121.1 MGP_CASTEiJ_G0016966.1 mouse_genomes_project 10 89940493 89996202 - MGP_CASTEiJ_P0026121 Nr1h4 protein_coding protein_coding MGP_CASTEiJ_T0026122.1 MGP_CASTEiJ_G0016966.1 mouse_genomes_project 10 89940493 89996193 - MGP_CASTEiJ_P0026122 Nr1h4 protein_coding protein_coding MGP_CASTEiJ_T0026123.1 MGP_CASTEiJ_G0016966.1 mouse_genomes_project 10 89940632 90023787 - MGP_CASTEiJ_P0026123 Nr1h4 protein_coding protein_coding MGP_CASTEiJ_T0009382.1 MGP_CASTEiJ_G0007570.1 mouse_genomes_project 10 118562486 118562581 - Gm25190 miRNA miRNA MGP_CASTEiJ_T0100396.1 MGP_CASTEiJ_G0037309.1 mouse_genomes_project 10 112439747 112439869 - Gm22186 snoRNA snoRNA MGP_CASTEiJ_T0025195.1 MGP_CASTEiJ_G0016725.1 mouse_genomes_project 10 77303965 77305440 - MGP_CASTEiJ_P0025195 Gm10941 protein_coding protein_coding MGP_CASTEiJ_T0024210.1 MGP_CASTEiJ_G0016468.1 mouse_genomes_project 10 32170111 32180902 + MGP_CASTEiJ_P0024210 Rsph4a protein_coding protein_coding MGP_CASTEiJ_T0024211.1 MGP_CASTEiJ_G0016468.1 mouse_genomes_project 10 32170485 32180764 + MGP_CASTEiJ_P0024211 Rsph4a protein_coding protein_coding MGP_CASTEiJ_T0024562.1 MGP_CASTEiJ_G0016582.1 mouse_genomes_project 10 57446045 57446329 + MGP_CASTEiJ_P0024562 BB019430 protein_coding protein_coding MGP_CASTEiJ_T0012109.1 MGP_CASTEiJ_G0010272.1 mouse_genomes_project 10 133337775 133342788 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024486.1 MGP_CASTEiJ_G0016556.1 mouse_genomes_project 10 51313137 51355785 - MGP_CASTEiJ_P0024486 Gopc protein_coding protein_coding MGP_CASTEiJ_T0024487.1 MGP_CASTEiJ_G0016556.1 mouse_genomes_project 10 51313137 51355785 - MGP_CASTEiJ_P0024487 Gopc protein_coding protein_coding MGP_CASTEiJ_T0024488.1 MGP_CASTEiJ_G0016556.1 mouse_genomes_project 10 51315841 51355559 - MGP_CASTEiJ_P0024488 Gopc protein_coding unknown_likely_coding MGP_CASTEiJ_T0026275.1 MGP_CASTEiJ_G0016995.1 mouse_genomes_project 10 95484321 95590171 + MGP_CASTEiJ_P0026275 Cep83 protein_coding protein_coding MGP_CASTEiJ_T0026276.1 MGP_CASTEiJ_G0016995.1 mouse_genomes_project 10 95484413 95568902 + MGP_CASTEiJ_P0026276 Cep83 protein_coding unknown_likely_coding MGP_CASTEiJ_T0005952.1 MGP_CASTEiJ_G0004993.1 mouse_genomes_project 10 80817330 80819193 + Gm26710 lincRNA lincRNA MGP_CASTEiJ_T0002917.1 MGP_CASTEiJ_G0002741.1 mouse_genomes_project 10 38050854 38083864 - Gm16365 antisense antisense MGP_CASTEiJ_T0002918.1 MGP_CASTEiJ_G0002741.1 mouse_genomes_project 10 38052383 38109267 - Gm16365 antisense antisense MGP_CASTEiJ_T0002919.1 MGP_CASTEiJ_G0002741.1 mouse_genomes_project 10 38054848 38109271 - Gm16365 antisense antisense MGP_CASTEiJ_T0002920.1 MGP_CASTEiJ_G0002741.1 mouse_genomes_project 10 38091245 38109282 - Gm16365 antisense antisense MGP_CASTEiJ_T0024092.1 MGP_CASTEiJ_G0016427.1 mouse_genomes_project 10 21842461 21847608 + MGP_CASTEiJ_P0024092 protein_coding protein_coding MGP_CASTEiJ_T0026867.1 MGP_CASTEiJ_G0017192.1 mouse_genomes_project 10 131541356 131556918 - MGP_CASTEiJ_P0026867 Esyt1 protein_coding protein_coding MGP_CASTEiJ_T0026263.1 MGP_CASTEiJ_G0016992.1 mouse_genomes_project 10 94955184 94982375 + MGP_CASTEiJ_P0026263 Ndufa12 protein_coding protein_coding MGP_CASTEiJ_T0026264.1 MGP_CASTEiJ_G0016992.1 mouse_genomes_project 10 94955188 94960411 + Ndufa12 protein_coding retained_intron MGP_CASTEiJ_T0026265.1 MGP_CASTEiJ_G0016992.1 mouse_genomes_project 10 94956186 94981714 + MGP_CASTEiJ_P0026265 Ndufa12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026045.1 MGP_CASTEiJ_G0016950.1 mouse_genomes_project 10 88246856 88324593 + MGP_CASTEiJ_P0026045 Igf1 protein_coding protein_coding MGP_CASTEiJ_T0026046.1 MGP_CASTEiJ_G0016950.1 mouse_genomes_project 10 88247664 88329281 + MGP_CASTEiJ_P0026046 Igf1 protein_coding protein_coding MGP_CASTEiJ_T0026047.1 MGP_CASTEiJ_G0016950.1 mouse_genomes_project 10 88247854 88325500 + MGP_CASTEiJ_P0026047 Igf1 protein_coding protein_coding MGP_CASTEiJ_T0026048.1 MGP_CASTEiJ_G0016950.1 mouse_genomes_project 10 88248089 88324591 + MGP_CASTEiJ_P0026048 Igf1 protein_coding protein_coding MGP_CASTEiJ_T0026049.1 MGP_CASTEiJ_G0016950.1 mouse_genomes_project 10 88248210 88305342 + MGP_CASTEiJ_P0026049 Igf1 protein_coding protein_coding MGP_CASTEiJ_T0026050.1 MGP_CASTEiJ_G0016950.1 mouse_genomes_project 10 88248630 88305860 + MGP_CASTEiJ_P0026050 Igf1 protein_coding protein_coding MGP_CASTEiJ_T0026051.1 MGP_CASTEiJ_G0016950.1 mouse_genomes_project 10 88249202 88324597 + MGP_CASTEiJ_P0026051 Igf1 protein_coding protein_coding MGP_CASTEiJ_T0026052.1 MGP_CASTEiJ_G0016950.1 mouse_genomes_project 10 88249925 88324575 + MGP_CASTEiJ_P0026052 Igf1 protein_coding protein_coding MGP_CASTEiJ_T0098318.1 MGP_CASTEiJ_G0035249.1 mouse_genomes_project 10 77941654 77942950 - pseudogene pseudogene MGP_CASTEiJ_T0024320.1 MGP_CASTEiJ_G0016511.1 mouse_genomes_project 10 40064324 40079511 + MGP_CASTEiJ_P0024320 Zbtb24 protein_coding protein_coding MGP_CASTEiJ_T0025211.1 MGP_CASTEiJ_G0016728.1 mouse_genomes_project 10 77538965 77574007 - MGP_CASTEiJ_P0025211 Fam207a protein_coding protein_coding MGP_CASTEiJ_T0099172.1 MGP_CASTEiJ_G0036085.1 mouse_genomes_project 10 45758323 45758486 - Gm25650 snRNA snRNA MGP_CASTEiJ_T0009330.1 MGP_CASTEiJ_G0007518.1 mouse_genomes_project 10 24283009 24283135 - Gm27754 miRNA miRNA MGP_CASTEiJ_T0010949.1 MGP_CASTEiJ_G0009137.1 mouse_genomes_project 10 92721840 92722103 - Gm27588 misc_RNA misc_RNA MGP_CASTEiJ_T0100359.1 MGP_CASTEiJ_G0037272.1 mouse_genomes_project 10 25439041 25439113 + Gm23353 snoRNA snoRNA MGP_CASTEiJ_T0025363.1 MGP_CASTEiJ_G0016780.1 mouse_genomes_project 10 79801053 79804993 + MGP_CASTEiJ_P0025363 Madcam1 protein_coding protein_coding MGP_CASTEiJ_T0025978.1 MGP_CASTEiJ_G0016932.1 mouse_genomes_project 10 85552734 85553721 + MGP_CASTEiJ_P0025978 Gm8394 protein_coding protein_coding MGP_CASTEiJ_T0026174.1 MGP_CASTEiJ_G0016973.1 mouse_genomes_project 10 91666261 91689645 + MGP_CASTEiJ_P0026174 Ikbip protein_coding protein_coding MGP_CASTEiJ_T0026175.1 MGP_CASTEiJ_G0016973.1 mouse_genomes_project 10 91666378 91684980 + MGP_CASTEiJ_P0026175 Ikbip protein_coding protein_coding MGP_CASTEiJ_T0026176.1 MGP_CASTEiJ_G0016973.1 mouse_genomes_project 10 91666427 91678313 + Ikbip protein_coding processed_transcript MGP_CASTEiJ_T0026177.1 MGP_CASTEiJ_G0016973.1 mouse_genomes_project 10 91666441 91678896 + Ikbip protein_coding retained_intron MGP_CASTEiJ_T0026178.1 MGP_CASTEiJ_G0016973.1 mouse_genomes_project 10 91681072 91689133 + Ikbip protein_coding processed_transcript MGP_CASTEiJ_T0002986.1 MGP_CASTEiJ_G0002792.1 mouse_genomes_project 10 118435793 118441442 + antisense antisense MGP_CASTEiJ_T0025511.1 MGP_CASTEiJ_G0016815.1 mouse_genomes_project 10 80339853 80352269 + MGP_CASTEiJ_P0025511 Midn protein_coding protein_coding MGP_CASTEiJ_T0025512.1 MGP_CASTEiJ_G0016815.1 mouse_genomes_project 10 80339853 80352268 + MGP_CASTEiJ_P0025512 Midn protein_coding protein_coding MGP_CASTEiJ_T0025513.1 MGP_CASTEiJ_G0016815.1 mouse_genomes_project 10 80341049 80342216 + MGP_CASTEiJ_P0025513 Midn protein_coding protein_coding MGP_CASTEiJ_T0025514.1 MGP_CASTEiJ_G0016815.1 mouse_genomes_project 10 80341823 80347515 + Midn protein_coding processed_transcript MGP_CASTEiJ_T0025515.1 MGP_CASTEiJ_G0016815.1 mouse_genomes_project 10 80344286 80347696 + MGP_CASTEiJ_P0025515 Midn protein_coding protein_coding MGP_CASTEiJ_T0025516.1 MGP_CASTEiJ_G0016815.1 mouse_genomes_project 10 80344983 80348300 + MGP_CASTEiJ_P0025516 Midn protein_coding protein_coding MGP_CASTEiJ_T0025517.1 MGP_CASTEiJ_G0016815.1 mouse_genomes_project 10 80345067 80347524 + MGP_CASTEiJ_P0025517 Midn protein_coding protein_coding MGP_CASTEiJ_T0002936.1 MGP_CASTEiJ_G0002754.1 mouse_genomes_project 10 62176389 62178264 - Gm16143 antisense antisense MGP_CASTEiJ_T0025815.1 MGP_CASTEiJ_G0016891.1 mouse_genomes_project 10 81811228 81821370 - MGP_CASTEiJ_P0025815 Ncln protein_coding protein_coding MGP_CASTEiJ_T0025816.1 MGP_CASTEiJ_G0016891.1 mouse_genomes_project 10 81811431 81821276 - MGP_CASTEiJ_P0025816 Ncln protein_coding unknown_likely_coding MGP_CASTEiJ_T0025817.1 MGP_CASTEiJ_G0016891.1 mouse_genomes_project 10 81811436 81821304 - MGP_CASTEiJ_P0025817 Ncln protein_coding protein_coding MGP_CASTEiJ_T0025818.1 MGP_CASTEiJ_G0016891.1 mouse_genomes_project 10 81812077 81813378 - Ncln protein_coding retained_intron MGP_CASTEiJ_T0025819.1 MGP_CASTEiJ_G0016891.1 mouse_genomes_project 10 81812269 81813198 - MGP_CASTEiJ_P0025819 Ncln protein_coding protein_coding MGP_CASTEiJ_T0025820.1 MGP_CASTEiJ_G0016891.1 mouse_genomes_project 10 81812319 81813623 - Ncln protein_coding retained_intron MGP_CASTEiJ_T0025821.1 MGP_CASTEiJ_G0016891.1 mouse_genomes_project 10 81812359 81813621 - Ncln protein_coding retained_intron MGP_CASTEiJ_T0025822.1 MGP_CASTEiJ_G0016891.1 mouse_genomes_project 10 81813206 81815248 - Ncln protein_coding retained_intron MGP_CASTEiJ_T0025823.1 MGP_CASTEiJ_G0016891.1 mouse_genomes_project 10 81815904 81817031 - Ncln protein_coding retained_intron MGP_CASTEiJ_T0025824.1 MGP_CASTEiJ_G0016891.1 mouse_genomes_project 10 81818298 81821320 - Ncln protein_coding retained_intron MGP_CASTEiJ_T0100394.1 MGP_CASTEiJ_G0037307.1 mouse_genomes_project 10 109768915 109769043 + Gm23105 snoRNA snoRNA MGP_CASTEiJ_T0026844.1 MGP_CASTEiJ_G0017185.1 mouse_genomes_project 10 131400533 131408661 + Ankrd52 protein_coding retained_intron MGP_CASTEiJ_T0026845.1 MGP_CASTEiJ_G0017185.1 mouse_genomes_project 10 131400537 131417172 + MGP_CASTEiJ_P0026845 Ankrd52 protein_coding protein_coding MGP_CASTEiJ_T0026846.1 MGP_CASTEiJ_G0017185.1 mouse_genomes_project 10 131412463 131432414 + MGP_CASTEiJ_P0026846 Ankrd52 protein_coding protein_coding MGP_CASTEiJ_T0009343.1 MGP_CASTEiJ_G0007531.1 mouse_genomes_project 10 61230350 61230411 - Mir7662 miRNA miRNA MGP_CASTEiJ_T0024305.1 MGP_CASTEiJ_G0016502.1 mouse_genomes_project 10 38909117 39062427 + MGP_CASTEiJ_P0024305 Cdk19 protein_coding protein_coding MGP_CASTEiJ_T0024306.1 MGP_CASTEiJ_G0016502.1 mouse_genomes_project 10 38909117 39062427 + MGP_CASTEiJ_P0024306 Cdk19 protein_coding protein_coding MGP_CASTEiJ_T0000798.1 MGP_CASTEiJ_G0000738.1 mouse_genomes_project 10 123034214 123037897 - TEC TEC MGP_CASTEiJ_T0099199.1 MGP_CASTEiJ_G0036112.1 mouse_genomes_project 10 106086639 106086744 - Gm25522 snRNA snRNA MGP_CASTEiJ_T0003004.1 MGP_CASTEiJ_G0002805.1 mouse_genomes_project 10 131553322 131556695 + Gm29585 antisense antisense MGP_CASTEiJ_T0003005.1 MGP_CASTEiJ_G0002805.1 mouse_genomes_project 10 131555629 131556716 + Gm29585 antisense antisense MGP_CASTEiJ_T0003006.1 MGP_CASTEiJ_G0002805.1 mouse_genomes_project 10 131556387 131578202 + Gm29585 antisense antisense MGP_CASTEiJ_T0010957.1 MGP_CASTEiJ_G0009145.1 mouse_genomes_project 10 116790794 116791119 - Gm25319 misc_RNA misc_RNA MGP_CASTEiJ_T0023953.1 MGP_CASTEiJ_G0016375.1 mouse_genomes_project 10 15213223 15224879 + Txlnb protein_coding retained_intron MGP_CASTEiJ_T0023954.1 MGP_CASTEiJ_G0016375.1 mouse_genomes_project 10 15213253 15262905 + MGP_CASTEiJ_P0023954 Txlnb protein_coding protein_coding MGP_CASTEiJ_T0025959.1 MGP_CASTEiJ_G0016922.1 mouse_genomes_project 10 84570861 84637356 - MGP_CASTEiJ_P0025959 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025960.1 MGP_CASTEiJ_G0016922.1 mouse_genomes_project 10 84572778 84589570 - MGP_CASTEiJ_P0025960 protein_coding protein_coding MGP_CASTEiJ_T0026969.1 MGP_CASTEiJ_G0017254.1 mouse_genomes_project 10 133118625 133119582 - MGP_CASTEiJ_P0026969 Olfr818 protein_coding protein_coding MGP_CASTEiJ_T0026970.1 MGP_CASTEiJ_G0017254.1 mouse_genomes_project 10 133118867 133126248 - MGP_CASTEiJ_P0026970 Olfr818 protein_coding protein_coding MGP_CASTEiJ_T0098314.1 MGP_CASTEiJ_G0035245.1 mouse_genomes_project 10 63209593 63209957 + pseudogene pseudogene MGP_CASTEiJ_T0024682.1 MGP_CASTEiJ_G0016612.1 mouse_genomes_project 10 60393758 60412324 - MGP_CASTEiJ_P0024682 Eif4ebp2 protein_coding protein_coding MGP_CASTEiJ_T0023749.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3866424 4162694 + MGP_CASTEiJ_P0023749 Oprm1 protein_coding protein_coding MGP_CASTEiJ_T0023750.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3866424 4109940 + MGP_CASTEiJ_P0023750 Oprm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023751.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3866511 3966058 + MGP_CASTEiJ_P0023751 Oprm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023752.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3866511 4163040 + MGP_CASTEiJ_P0023752 Oprm1 protein_coding protein_coding MGP_CASTEiJ_T0023753.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3866511 3944259 + MGP_CASTEiJ_P0023753 Oprm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023754.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3866511 3966058 + MGP_CASTEiJ_P0023754 Oprm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023755.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3898979 4162673 + MGP_CASTEiJ_P0023755 Oprm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023756.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899094 4110000 + MGP_CASTEiJ_P0023756 Oprm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023757.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899094 4162691 + MGP_CASTEiJ_P0023757 Oprm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023758.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899094 3957662 + MGP_CASTEiJ_P0023758 Oprm1 protein_coding protein_coding MGP_CASTEiJ_T0023759.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899094 4163692 + MGP_CASTEiJ_P0023759 Oprm1 protein_coding protein_coding MGP_CASTEiJ_T0023760.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899094 3956205 + MGP_CASTEiJ_P0023760 Oprm1 protein_coding protein_coding MGP_CASTEiJ_T0023761.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899094 3945933 + MGP_CASTEiJ_P0023761 Oprm1 protein_coding protein_coding MGP_CASTEiJ_T0023762.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899094 3957802 + MGP_CASTEiJ_P0023762 Oprm1 protein_coding protein_coding MGP_CASTEiJ_T0023763.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899094 4109990 + MGP_CASTEiJ_P0023763 Oprm1 protein_coding protein_coding MGP_CASTEiJ_T0023764.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899094 3957643 + MGP_CASTEiJ_P0023764 Oprm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023765.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899094 3954966 + MGP_CASTEiJ_P0023765 Oprm1 protein_coding protein_coding MGP_CASTEiJ_T0023766.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899094 3948151 + MGP_CASTEiJ_P0023766 Oprm1 protein_coding protein_coding MGP_CASTEiJ_T0023767.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899094 4162694 + MGP_CASTEiJ_P0023767 Oprm1 protein_coding protein_coding MGP_CASTEiJ_T0023768.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899094 4162975 + MGP_CASTEiJ_P0023768 Oprm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023769.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899094 4162955 + MGP_CASTEiJ_P0023769 Oprm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023770.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899122 3956240 + MGP_CASTEiJ_P0023770 Oprm1 protein_coding protein_coding MGP_CASTEiJ_T0023771.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899122 3947957 + MGP_CASTEiJ_P0023771 Oprm1 protein_coding protein_coding MGP_CASTEiJ_T0023772.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899160 3966044 + MGP_CASTEiJ_P0023772 Oprm1 protein_coding protein_coding MGP_CASTEiJ_T0023773.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899260 4162975 + Oprm1 protein_coding processed_transcript MGP_CASTEiJ_T0023774.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899310 3944206 + Oprm1 protein_coding processed_transcript MGP_CASTEiJ_T0023775.1 MGP_CASTEiJ_G0016333.1 mouse_genomes_project 10 3899384 3966187 + Oprm1 protein_coding processed_transcript MGP_CASTEiJ_T0025613.1 MGP_CASTEiJ_G0016836.1 mouse_genomes_project 10 80777331 80784228 - Rexo1 protein_coding retained_intron MGP_CASTEiJ_T0025614.1 MGP_CASTEiJ_G0016836.1 mouse_genomes_project 10 80777334 80800199 - MGP_CASTEiJ_P0025614 Rexo1 protein_coding protein_coding MGP_CASTEiJ_T0025615.1 MGP_CASTEiJ_G0016836.1 mouse_genomes_project 10 80778073 80786315 - MGP_CASTEiJ_P0025615 Rexo1 protein_coding protein_coding MGP_CASTEiJ_T0025616.1 MGP_CASTEiJ_G0016836.1 mouse_genomes_project 10 80778682 80784864 - Rexo1 protein_coding retained_intron MGP_CASTEiJ_T0025617.1 MGP_CASTEiJ_G0016836.1 mouse_genomes_project 10 80778682 80785196 - Rexo1 protein_coding retained_intron MGP_CASTEiJ_T0025618.1 MGP_CASTEiJ_G0016836.1 mouse_genomes_project 10 80779025 80780723 - MGP_CASTEiJ_P0025618 Rexo1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025619.1 MGP_CASTEiJ_G0016836.1 mouse_genomes_project 10 80784388 80787863 - MGP_CASTEiJ_P0025619 Rexo1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025620.1 MGP_CASTEiJ_G0016836.1 mouse_genomes_project 10 80785720 80787861 - Rexo1 protein_coding processed_transcript MGP_CASTEiJ_T0012051.1 MGP_CASTEiJ_G0010214.1 mouse_genomes_project 10 22385938 22386460 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002993.1 MGP_CASTEiJ_G0002795.1 mouse_genomes_project 10 121705840 121706786 - Gm16321 antisense antisense MGP_CASTEiJ_T0026841.1 MGP_CASTEiJ_G0017183.1 mouse_genomes_project 10 131355805 131381602 + MGP_CASTEiJ_P0026841 Cs protein_coding protein_coding MGP_CASTEiJ_T0025431.1 MGP_CASTEiJ_G0016797.1 mouse_genomes_project 10 80052468 80054272 + MGP_CASTEiJ_P0025431 Cfd protein_coding protein_coding MGP_CASTEiJ_T0012038.1 MGP_CASTEiJ_G0010201.1 mouse_genomes_project 10 985985 988163 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0026805.1 MGP_CASTEiJ_G0017172.1 mouse_genomes_project 10 131126527 131174198 - MGP_CASTEiJ_P0026805 Rbms2 protein_coding protein_coding MGP_CASTEiJ_T0024244.1 MGP_CASTEiJ_G0016485.1 mouse_genomes_project 10 37277350 37278589 - MGP_CASTEiJ_P0024244 Rfpl4b protein_coding protein_coding MGP_CASTEiJ_T0012085.1 MGP_CASTEiJ_G0010248.1 mouse_genomes_project 10 75868435 75868828 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0026932.1 MGP_CASTEiJ_G0017224.1 mouse_genomes_project 10 132287087 132288023 - MGP_CASTEiJ_P0026932 Olfr772 protein_coding protein_coding MGP_CASTEiJ_T0012048.1 MGP_CASTEiJ_G0010211.1 mouse_genomes_project 10 19731664 19732536 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0026532.1 MGP_CASTEiJ_G0017088.1 mouse_genomes_project 10 119971656 120003106 - MGP_CASTEiJ_P0026532 Rap1b protein_coding protein_coding MGP_CASTEiJ_T0099183.1 MGP_CASTEiJ_G0036096.1 mouse_genomes_project 10 79843621 79843728 - Gm25794 snRNA snRNA MGP_CASTEiJ_T0026921.1 MGP_CASTEiJ_G0017216.1 mouse_genomes_project 10 132095559 132099870 + MGP_CASTEiJ_P0026921 protein_coding protein_coding MGP_CASTEiJ_T0026877.1 MGP_CASTEiJ_G0017197.1 mouse_genomes_project 10 131673213 131676830 - MGP_CASTEiJ_P0026877 Rps26 protein_coding protein_coding MGP_CASTEiJ_T0026878.1 MGP_CASTEiJ_G0017197.1 mouse_genomes_project 10 131674864 131677103 - MGP_CASTEiJ_P0026878 Rps26 protein_coding unknown_likely_coding MGP_CASTEiJ_T0016404.1 MGP_CASTEiJ_G0014458.1 mouse_genomes_project 10 130161084 130162177 - Gm4189 processed_transcript processed_transcript MGP_CASTEiJ_T0016405.1 MGP_CASTEiJ_G0014458.1 mouse_genomes_project 10 130161084 130162113 - Gm4189 processed_transcript retained_intron MGP_CASTEiJ_T0025766.1 MGP_CASTEiJ_G0016882.1 mouse_genomes_project 10 81644368 81650714 - MGP_CASTEiJ_P0025766 Gipc3 protein_coding protein_coding MGP_CASTEiJ_T0025767.1 MGP_CASTEiJ_G0016882.1 mouse_genomes_project 10 81644419 81650746 - MGP_CASTEiJ_P0025767 Gipc3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012095.1 MGP_CASTEiJ_G0010258.1 mouse_genomes_project 10 104858439 104859432 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024571.1 MGP_CASTEiJ_G0016587.1 mouse_genomes_project 10 58093633 58147198 + MGP_CASTEiJ_P0024571 P4ha1 protein_coding protein_coding MGP_CASTEiJ_T0024572.1 MGP_CASTEiJ_G0016587.1 mouse_genomes_project 10 58093701 58145852 + MGP_CASTEiJ_P0024572 P4ha1 protein_coding protein_coding MGP_CASTEiJ_T0024573.1 MGP_CASTEiJ_G0016587.1 mouse_genomes_project 10 58093705 58146147 + MGP_CASTEiJ_P0024573 P4ha1 protein_coding protein_coding MGP_CASTEiJ_T0009331.1 MGP_CASTEiJ_G0007519.1 mouse_genomes_project 10 26228145 26228228 - Gm22370 miRNA miRNA MGP_CASTEiJ_T0024448.1 MGP_CASTEiJ_G0016542.1 mouse_genomes_project 10 44204942 44234072 + MGP_CASTEiJ_P0024448 Popdc3 protein_coding protein_coding MGP_CASTEiJ_T0024449.1 MGP_CASTEiJ_G0016542.1 mouse_genomes_project 10 44205039 44233737 + MGP_CASTEiJ_P0024449 Popdc3 protein_coding protein_coding MGP_CASTEiJ_T0023834.1 MGP_CASTEiJ_G0016349.1 mouse_genomes_project 10 6832008 6881544 - MGP_CASTEiJ_P0023834 Samd5 protein_coding protein_coding MGP_CASTEiJ_T0012055.1 MGP_CASTEiJ_G0010218.1 mouse_genomes_project 10 37910996 37911375 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012100.1 MGP_CASTEiJ_G0010263.1 mouse_genomes_project 10 119726463 119727381 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002997.1 MGP_CASTEiJ_G0002798.1 mouse_genomes_project 10 122723071 122726305 + 9230105E05Rik antisense antisense MGP_CASTEiJ_T0026948.1 MGP_CASTEiJ_G0017239.1 mouse_genomes_project 10 132662845 132667857 + MGP_CASTEiJ_P0026948 Olfr794 protein_coding protein_coding MGP_CASTEiJ_T0026949.1 MGP_CASTEiJ_G0017239.1 mouse_genomes_project 10 132666891 132667857 + MGP_CASTEiJ_P0026949 Olfr794 protein_coding protein_coding MGP_CASTEiJ_T0026053.1 MGP_CASTEiJ_G0016951.1 mouse_genomes_project 10 88485169 88486469 + MGP_CASTEiJ_P0026053 Pmch protein_coding protein_coding MGP_CASTEiJ_T0024973.1 MGP_CASTEiJ_G0016675.1 mouse_genomes_project 10 70922857 70938227 - MGP_CASTEiJ_P0024973 Cisd1 protein_coding protein_coding MGP_CASTEiJ_T0005921.1 MGP_CASTEiJ_G0004968.1 mouse_genomes_project 10 19485065 19499928 - Platr6 lincRNA lincRNA MGP_CASTEiJ_T0026775.1 MGP_CASTEiJ_G0017162.1 mouse_genomes_project 10 130804178 130807821 + MGP_CASTEiJ_P0026775 protein_coding protein_coding MGP_CASTEiJ_T0026907.1 MGP_CASTEiJ_G0017212.1 mouse_genomes_project 10 131990088 131998124 - MGP_CASTEiJ_P0026907 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026908.1 MGP_CASTEiJ_G0017212.1 mouse_genomes_project 10 131990316 131996784 - MGP_CASTEiJ_P0026908 protein_coding protein_coding MGP_CASTEiJ_T0026909.1 MGP_CASTEiJ_G0017212.1 mouse_genomes_project 10 131990345 131991124 - protein_coding retained_intron MGP_CASTEiJ_T0026910.1 MGP_CASTEiJ_G0017212.1 mouse_genomes_project 10 131990724 131998004 - MGP_CASTEiJ_P0026910 protein_coding protein_coding MGP_CASTEiJ_T0026911.1 MGP_CASTEiJ_G0017212.1 mouse_genomes_project 10 131996028 131998029 - protein_coding retained_intron MGP_CASTEiJ_T0026913.1 MGP_CASTEiJ_G0017212.1 mouse_genomes_project 10 131996655 131997437 - MGP_CASTEiJ_P0026913 protein_coding protein_coding MGP_CASTEiJ_T0026914.1 MGP_CASTEiJ_G0017212.1 mouse_genomes_project 10 131997151 132001623 - MGP_CASTEiJ_P0026914 protein_coding protein_coding MGP_CASTEiJ_T0026912.1 MGP_CASTEiJ_G0017213.1 mouse_genomes_project 10 131996613 132002261 - MGP_CASTEiJ_P0026912 Bloc1s1 protein_coding protein_coding MGP_CASTEiJ_T0026915.1 MGP_CASTEiJ_G0017213.1 mouse_genomes_project 10 131998645 132002261 - MGP_CASTEiJ_P0026915 Bloc1s1 protein_coding protein_coding MGP_CASTEiJ_T0026916.1 MGP_CASTEiJ_G0017213.1 mouse_genomes_project 10 131998678 132002772 - MGP_CASTEiJ_P0026916 Bloc1s1 protein_coding protein_coding MGP_CASTEiJ_T0026917.1 MGP_CASTEiJ_G0017213.1 mouse_genomes_project 10 131998774 132001761 - Bloc1s1 protein_coding processed_transcript MGP_CASTEiJ_T0026918.1 MGP_CASTEiJ_G0017213.1 mouse_genomes_project 10 132001250 132002261 - Bloc1s1 protein_coding retained_intron MGP_CASTEiJ_T0009374.1 MGP_CASTEiJ_G0007562.1 mouse_genomes_project 10 96397003 96397094 - Mir3058 miRNA miRNA MGP_CASTEiJ_T0009346.1 MGP_CASTEiJ_G0007534.1 mouse_genomes_project 10 76174051 76174135 - Mir678 miRNA miRNA MGP_CASTEiJ_T0024701.1 MGP_CASTEiJ_G0016621.1 mouse_genomes_project 10 60845959 60886235 - Col13a1 protein_coding processed_transcript MGP_CASTEiJ_T0024702.1 MGP_CASTEiJ_G0016621.1 mouse_genomes_project 10 60845959 60992517 - MGP_CASTEiJ_P0024702 Col13a1 protein_coding protein_coding MGP_CASTEiJ_T0024703.1 MGP_CASTEiJ_G0016621.1 mouse_genomes_project 10 60845959 60874260 - MGP_CASTEiJ_P0024703 Col13a1 protein_coding protein_coding MGP_CASTEiJ_T0024704.1 MGP_CASTEiJ_G0016621.1 mouse_genomes_project 10 60845959 60992517 - MGP_CASTEiJ_P0024704 Col13a1 protein_coding protein_coding MGP_CASTEiJ_T0024705.1 MGP_CASTEiJ_G0016621.1 mouse_genomes_project 10 60845959 60992552 - MGP_CASTEiJ_P0024705 Col13a1 protein_coding protein_coding MGP_CASTEiJ_T0024706.1 MGP_CASTEiJ_G0016621.1 mouse_genomes_project 10 60856487 60991575 - Col13a1 protein_coding retained_intron MGP_CASTEiJ_T0024707.1 MGP_CASTEiJ_G0016621.1 mouse_genomes_project 10 60856616 60859306 - Col13a1 protein_coding retained_intron MGP_CASTEiJ_T0009391.1 MGP_CASTEiJ_G0007579.1 mouse_genomes_project 10 129829715 129829821 + Mir26a-2 miRNA miRNA MGP_CASTEiJ_T0026597.1 MGP_CASTEiJ_G0017105.1 mouse_genomes_project 10 123859246 123935969 - MGP_CASTEiJ_P0026597 Rassf3 protein_coding protein_coding MGP_CASTEiJ_T0024583.1 MGP_CASTEiJ_G0016591.1 mouse_genomes_project 10 58403320 58403672 + MGP_CASTEiJ_P0024583 Gm10322 protein_coding protein_coding MGP_CASTEiJ_T0009354.1 MGP_CASTEiJ_G0007542.1 mouse_genomes_project 10 80020288 80020354 + Mir6910 miRNA miRNA MGP_CASTEiJ_T0026473.1 MGP_CASTEiJ_G0017070.1 mouse_genomes_project 10 118307434 118402088 + MGP_CASTEiJ_P0026473 Ptprb protein_coding protein_coding MGP_CASTEiJ_T0000783.1 MGP_CASTEiJ_G0000724.1 mouse_genomes_project 10 80740416 80741347 + TEC TEC MGP_CASTEiJ_T0101963.1 MGP_CASTEiJ_G0038688.1 mouse_genomes_project 10 78680931 78681869 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0026229.1 MGP_CASTEiJ_G0016988.1 mouse_genomes_project 10 94591904 94623256 - MGP_CASTEiJ_P0026229 Metap2 protein_coding protein_coding MGP_CASTEiJ_T0026230.1 MGP_CASTEiJ_G0016988.1 mouse_genomes_project 10 94593263 94597484 - Metap2 protein_coding retained_intron MGP_CASTEiJ_T0026231.1 MGP_CASTEiJ_G0016988.1 mouse_genomes_project 10 94594363 94624650 - MGP_CASTEiJ_P0026231 Metap2 protein_coding protein_coding MGP_CASTEiJ_T0026232.1 MGP_CASTEiJ_G0016988.1 mouse_genomes_project 10 94594364 94623217 - MGP_CASTEiJ_P0026232 Metap2 protein_coding protein_coding MGP_CASTEiJ_T0026233.1 MGP_CASTEiJ_G0016988.1 mouse_genomes_project 10 94594364 94623226 - MGP_CASTEiJ_P0026233 Metap2 protein_coding protein_coding MGP_CASTEiJ_T0026234.1 MGP_CASTEiJ_G0016988.1 mouse_genomes_project 10 94595016 94605076 - MGP_CASTEiJ_P0026234 Metap2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026235.1 MGP_CASTEiJ_G0016988.1 mouse_genomes_project 10 94595486 94623213 - MGP_CASTEiJ_P0026235 Metap2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026236.1 MGP_CASTEiJ_G0016988.1 mouse_genomes_project 10 94595655 94597415 - Metap2 protein_coding retained_intron MGP_CASTEiJ_T0026237.1 MGP_CASTEiJ_G0016988.1 mouse_genomes_project 10 94602259 94604934 - Metap2 protein_coding retained_intron MGP_CASTEiJ_T0026238.1 MGP_CASTEiJ_G0016988.1 mouse_genomes_project 10 94602356 94623062 - MGP_CASTEiJ_P0026238 Metap2 protein_coding protein_coding MGP_CASTEiJ_T0026239.1 MGP_CASTEiJ_G0016988.1 mouse_genomes_project 10 94603613 94623256 - MGP_CASTEiJ_P0026239 Metap2 protein_coding protein_coding MGP_CASTEiJ_T0026240.1 MGP_CASTEiJ_G0016988.1 mouse_genomes_project 10 94612932 94623170 - Metap2 protein_coding retained_intron MGP_CASTEiJ_T0026241.1 MGP_CASTEiJ_G0016988.1 mouse_genomes_project 10 94613011 94623203 - Metap2 protein_coding retained_intron MGP_CASTEiJ_T0026242.1 MGP_CASTEiJ_G0016988.1 mouse_genomes_project 10 94623136 94623742 - Metap2 protein_coding processed_transcript MGP_CASTEiJ_T0026243.1 MGP_CASTEiJ_G0016988.1 mouse_genomes_project 10 94623369 94624577 - Metap2 protein_coding processed_transcript MGP_CASTEiJ_T0026244.1 MGP_CASTEiJ_G0016988.1 mouse_genomes_project 10 94623488 94630587 - Metap2 protein_coding processed_transcript MGP_CASTEiJ_T0016397.1 MGP_CASTEiJ_G0014454.1 mouse_genomes_project 10 106862731 106871925 + Gm15663 processed_transcript lincRNA MGP_CASTEiJ_T0009362.1 MGP_CASTEiJ_G0007550.1 mouse_genomes_project 10 81697578 81697644 + Mir6913 miRNA miRNA MGP_CASTEiJ_T0009372.1 MGP_CASTEiJ_G0007560.1 mouse_genomes_project 10 94701682 94701778 - Mir331 miRNA miRNA MGP_CASTEiJ_T0002966.1 MGP_CASTEiJ_G0002778.1 mouse_genomes_project 10 86319583 86321461 - A230060F14Rik antisense antisense MGP_CASTEiJ_T0002967.1 MGP_CASTEiJ_G0002778.1 mouse_genomes_project 10 86320911 86321457 - A230060F14Rik antisense antisense MGP_CASTEiJ_T0012099.1 MGP_CASTEiJ_G0010262.1 mouse_genomes_project 10 119546930 119547439 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101976.1 MGP_CASTEiJ_G0038701.1 mouse_genomes_project 10 133283449 133284202 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0012103.1 MGP_CASTEiJ_G0010266.1 mouse_genomes_project 10 123318592 123321028 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099209.1 MGP_CASTEiJ_G0036122.1 mouse_genomes_project 10 130285994 130286103 - Gm23819 snRNA snRNA MGP_CASTEiJ_T0025198.1 MGP_CASTEiJ_G0016727.1 mouse_genomes_project 10 77341907 77468997 - MGP_CASTEiJ_P0025198 Adarb1 protein_coding protein_coding MGP_CASTEiJ_T0025199.1 MGP_CASTEiJ_G0016727.1 mouse_genomes_project 10 77341907 77468992 - MGP_CASTEiJ_P0025199 Adarb1 protein_coding protein_coding MGP_CASTEiJ_T0025200.1 MGP_CASTEiJ_G0016727.1 mouse_genomes_project 10 77341908 77468997 - MGP_CASTEiJ_P0025200 Adarb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025201.1 MGP_CASTEiJ_G0016727.1 mouse_genomes_project 10 77341908 77468954 - MGP_CASTEiJ_P0025201 Adarb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025202.1 MGP_CASTEiJ_G0016727.1 mouse_genomes_project 10 77341908 77468954 - MGP_CASTEiJ_P0025202 Adarb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025203.1 MGP_CASTEiJ_G0016727.1 mouse_genomes_project 10 77341909 77468997 - MGP_CASTEiJ_P0025203 Adarb1 protein_coding protein_coding MGP_CASTEiJ_T0025204.1 MGP_CASTEiJ_G0016727.1 mouse_genomes_project 10 77370115 77468938 - Adarb1 protein_coding retained_intron MGP_CASTEiJ_T0025205.1 MGP_CASTEiJ_G0016727.1 mouse_genomes_project 10 77370129 77468992 - Adarb1 protein_coding retained_intron MGP_CASTEiJ_T0025206.1 MGP_CASTEiJ_G0016727.1 mouse_genomes_project 10 77376014 77468965 - Adarb1 protein_coding retained_intron MGP_CASTEiJ_T0025207.1 MGP_CASTEiJ_G0016727.1 mouse_genomes_project 10 77378562 77468581 - Adarb1 protein_coding retained_intron MGP_CASTEiJ_T0025208.1 MGP_CASTEiJ_G0016727.1 mouse_genomes_project 10 77378753 77468944 - Adarb1 protein_coding retained_intron MGP_CASTEiJ_T0025209.1 MGP_CASTEiJ_G0016727.1 mouse_genomes_project 10 77378939 77393468 - Adarb1 protein_coding retained_intron MGP_CASTEiJ_T0025210.1 MGP_CASTEiJ_G0016727.1 mouse_genomes_project 10 77379014 77419066 - Adarb1 protein_coding retained_intron MGP_CASTEiJ_T0024517.1 MGP_CASTEiJ_G0016568.1 mouse_genomes_project 10 55116430 55124853 + MGP_CASTEiJ_P0024517 Msl3l2 protein_coding protein_coding MGP_CASTEiJ_T0002998.1 MGP_CASTEiJ_G0002799.1 mouse_genomes_project 10 123286686 123290054 + Gm4473 antisense antisense MGP_CASTEiJ_T0024635.1 MGP_CASTEiJ_G0016601.1 mouse_genomes_project 10 59211115 59238954 + MGP_CASTEiJ_P0024635 Vsir protein_coding protein_coding MGP_CASTEiJ_T0024636.1 MGP_CASTEiJ_G0016601.1 mouse_genomes_project 10 59211115 59238954 + MGP_CASTEiJ_P0024636 Vsir protein_coding protein_coding MGP_CASTEiJ_T0024637.1 MGP_CASTEiJ_G0016601.1 mouse_genomes_project 10 59211169 59222423 + Vsir protein_coding processed_transcript MGP_CASTEiJ_T0024638.1 MGP_CASTEiJ_G0016601.1 mouse_genomes_project 10 59211171 59222205 + Vsir protein_coding processed_transcript MGP_CASTEiJ_T0024639.1 MGP_CASTEiJ_G0016601.1 mouse_genomes_project 10 59211244 59225157 + Vsir protein_coding retained_intron MGP_CASTEiJ_T0024640.1 MGP_CASTEiJ_G0016601.1 mouse_genomes_project 10 59211272 59234079 + MGP_CASTEiJ_P0024640 Vsir protein_coding protein_coding MGP_CASTEiJ_T0024641.1 MGP_CASTEiJ_G0016601.1 mouse_genomes_project 10 59213591 59235600 + MGP_CASTEiJ_P0024641 Vsir protein_coding protein_coding MGP_CASTEiJ_T0024003.1 MGP_CASTEiJ_G0016393.1 mouse_genomes_project 10 17401997 17452116 - MGP_CASTEiJ_P0024003 Pex7 protein_coding protein_coding MGP_CASTEiJ_T0024004.1 MGP_CASTEiJ_G0016393.1 mouse_genomes_project 10 17402166 17452101 - MGP_CASTEiJ_P0024004 Pex7 protein_coding protein_coding MGP_CASTEiJ_T0024005.1 MGP_CASTEiJ_G0016393.1 mouse_genomes_project 10 17402858 17412933 - Pex7 protein_coding retained_intron MGP_CASTEiJ_T0024006.1 MGP_CASTEiJ_G0016393.1 mouse_genomes_project 10 17429207 17451972 - MGP_CASTEiJ_P0024006 Pex7 protein_coding protein_coding MGP_CASTEiJ_T0024357.1 MGP_CASTEiJ_G0016517.1 mouse_genomes_project 10 40258364 40289364 - MGP_CASTEiJ_P0024357 protein_coding protein_coding MGP_CASTEiJ_T0009339.1 MGP_CASTEiJ_G0007527.1 mouse_genomes_project 10 58954953 58955011 + Mir6906 miRNA miRNA MGP_CASTEiJ_T0026415.1 MGP_CASTEiJ_G0017047.1 mouse_genomes_project 10 112880000 112883031 + MGP_CASTEiJ_P0026415 Bbs10 protein_coding protein_coding MGP_CASTEiJ_T0099158.1 MGP_CASTEiJ_G0036071.1 mouse_genomes_project 10 14498982 14499079 + Gm25382 snRNA snRNA MGP_CASTEiJ_T0009340.1 MGP_CASTEiJ_G0007528.1 mouse_genomes_project 10 59825946 59826037 + Mir6408 miRNA miRNA MGP_CASTEiJ_T0024974.1 MGP_CASTEiJ_G0016676.1 mouse_genomes_project 10 70941622 70992710 + MGP_CASTEiJ_P0024974 Ipmk protein_coding protein_coding MGP_CASTEiJ_T0024975.1 MGP_CASTEiJ_G0016676.1 mouse_genomes_project 10 70941695 70987120 + MGP_CASTEiJ_P0024975 Ipmk protein_coding protein_coding MGP_CASTEiJ_T0024976.1 MGP_CASTEiJ_G0016676.1 mouse_genomes_project 10 70941695 70987359 + MGP_CASTEiJ_P0024976 Ipmk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024977.1 MGP_CASTEiJ_G0016676.1 mouse_genomes_project 10 70941695 70980902 + MGP_CASTEiJ_P0024977 Ipmk protein_coding protein_coding MGP_CASTEiJ_T0024978.1 MGP_CASTEiJ_G0016676.1 mouse_genomes_project 10 70941702 70959500 + Ipmk protein_coding retained_intron MGP_CASTEiJ_T0024979.1 MGP_CASTEiJ_G0016676.1 mouse_genomes_project 10 70941781 70987160 + MGP_CASTEiJ_P0024979 Ipmk protein_coding unknown_likely_coding MGP_CASTEiJ_T0024980.1 MGP_CASTEiJ_G0016676.1 mouse_genomes_project 10 70986868 71040861 + MGP_CASTEiJ_P0024980 Ipmk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024981.1 MGP_CASTEiJ_G0016676.1 mouse_genomes_project 10 71016765 71041008 + Ipmk protein_coding processed_transcript MGP_CASTEiJ_T0025159.1 MGP_CASTEiJ_G0016717.1 mouse_genomes_project 10 76551522 76560757 + MGP_CASTEiJ_P0025159 Spatc1l protein_coding protein_coding MGP_CASTEiJ_T0025160.1 MGP_CASTEiJ_G0016717.1 mouse_genomes_project 10 76551559 76560586 + MGP_CASTEiJ_P0025160 Spatc1l protein_coding protein_coding MGP_CASTEiJ_T0026920.1 MGP_CASTEiJ_G0017215.1 mouse_genomes_project 10 132040019 132042713 - MGP_CASTEiJ_P0026920 Mettl7b protein_coding protein_coding MGP_CASTEiJ_T0023968.1 MGP_CASTEiJ_G0016380.1 mouse_genomes_project 10 15655737 15676701 - MGP_CASTEiJ_P0023968 Ccdc28a protein_coding protein_coding MGP_CASTEiJ_T0023969.1 MGP_CASTEiJ_G0016380.1 mouse_genomes_project 10 15655743 15670980 - MGP_CASTEiJ_P0023969 Ccdc28a protein_coding protein_coding MGP_CASTEiJ_T0023970.1 MGP_CASTEiJ_G0016380.1 mouse_genomes_project 10 15655836 15658414 - Ccdc28a protein_coding retained_intron MGP_CASTEiJ_T0023971.1 MGP_CASTEiJ_G0016380.1 mouse_genomes_project 10 15656120 15661607 - MGP_CASTEiJ_P0023971 Ccdc28a protein_coding protein_coding MGP_CASTEiJ_T0023972.1 MGP_CASTEiJ_G0016380.1 mouse_genomes_project 10 15656140 15676703 - MGP_CASTEiJ_P0023972 Ccdc28a protein_coding protein_coding MGP_CASTEiJ_T0023973.1 MGP_CASTEiJ_G0016380.1 mouse_genomes_project 10 15658859 15676683 - MGP_CASTEiJ_P0023973 Ccdc28a protein_coding protein_coding MGP_CASTEiJ_T0026633.1 MGP_CASTEiJ_G0017115.1 mouse_genomes_project 10 125647785 125743846 - MGP_CASTEiJ_P0026633 Usp15 protein_coding protein_coding MGP_CASTEiJ_T0025544.1 MGP_CASTEiJ_G0016821.1 mouse_genomes_project 10 80455008 80457785 - MGP_CASTEiJ_P0025544 Gamt protein_coding protein_coding MGP_CASTEiJ_T0025545.1 MGP_CASTEiJ_G0016821.1 mouse_genomes_project 10 80455026 80457837 - MGP_CASTEiJ_P0025545 Gamt protein_coding protein_coding MGP_CASTEiJ_T0025546.1 MGP_CASTEiJ_G0016821.1 mouse_genomes_project 10 80455439 80457787 - Gamt protein_coding retained_intron MGP_CASTEiJ_T0025547.1 MGP_CASTEiJ_G0016821.1 mouse_genomes_project 10 80455655 80456152 - Gamt protein_coding retained_intron MGP_CASTEiJ_T0026493.1 MGP_CASTEiJ_G0017073.1 mouse_genomes_project 10 118827976 118961384 - MGP_CASTEiJ_P0026493 Myrfl protein_coding protein_coding MGP_CASTEiJ_T0025375.1 MGP_CASTEiJ_G0016786.1 mouse_genomes_project 10 79877309 79887713 - Polrmt protein_coding retained_intron MGP_CASTEiJ_T0025376.1 MGP_CASTEiJ_G0016786.1 mouse_genomes_project 10 79877313 79880537 - MGP_CASTEiJ_P0025376 Polrmt protein_coding protein_coding MGP_CASTEiJ_T0025377.1 MGP_CASTEiJ_G0016786.1 mouse_genomes_project 10 79877314 79887713 - Polrmt protein_coding retained_intron MGP_CASTEiJ_T0025378.1 MGP_CASTEiJ_G0016786.1 mouse_genomes_project 10 79877315 79877947 - Polrmt protein_coding processed_transcript MGP_CASTEiJ_T0025379.1 MGP_CASTEiJ_G0016786.1 mouse_genomes_project 10 79877316 79887721 - MGP_CASTEiJ_P0025379 Polrmt protein_coding protein_coding MGP_CASTEiJ_T0025380.1 MGP_CASTEiJ_G0016786.1 mouse_genomes_project 10 79877316 79887719 - MGP_CASTEiJ_P0025380 Polrmt protein_coding protein_coding MGP_CASTEiJ_T0025381.1 MGP_CASTEiJ_G0016786.1 mouse_genomes_project 10 79877358 79877932 - Polrmt protein_coding retained_intron MGP_CASTEiJ_T0025382.1 MGP_CASTEiJ_G0016786.1 mouse_genomes_project 10 79877359 79878877 - Polrmt protein_coding retained_intron MGP_CASTEiJ_T0025383.1 MGP_CASTEiJ_G0016786.1 mouse_genomes_project 10 79877360 79887711 - MGP_CASTEiJ_P0025383 Polrmt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025384.1 MGP_CASTEiJ_G0016786.1 mouse_genomes_project 10 79877393 79878850 - Polrmt protein_coding retained_intron MGP_CASTEiJ_T0025385.1 MGP_CASTEiJ_G0016786.1 mouse_genomes_project 10 79877763 79879794 - Polrmt protein_coding retained_intron MGP_CASTEiJ_T0025386.1 MGP_CASTEiJ_G0016786.1 mouse_genomes_project 10 79879250 79880538 - Polrmt protein_coding retained_intron MGP_CASTEiJ_T0025387.1 MGP_CASTEiJ_G0016786.1 mouse_genomes_project 10 79884806 79887713 - Polrmt protein_coding processed_transcript MGP_CASTEiJ_T0026681.1 MGP_CASTEiJ_G0017134.1 mouse_genomes_project 10 130047577 130052705 - MGP_CASTEiJ_P0026681 Dtx3 protein_coding protein_coding MGP_CASTEiJ_T0026682.1 MGP_CASTEiJ_G0017134.1 mouse_genomes_project 10 130047577 130052705 - MGP_CASTEiJ_P0026682 Dtx3 protein_coding protein_coding MGP_CASTEiJ_T0026683.1 MGP_CASTEiJ_G0017134.1 mouse_genomes_project 10 130047840 130052723 - MGP_CASTEiJ_P0026683 Dtx3 protein_coding protein_coding MGP_CASTEiJ_T0026684.1 MGP_CASTEiJ_G0017134.1 mouse_genomes_project 10 130048022 130051461 - MGP_CASTEiJ_P0026684 Dtx3 protein_coding protein_coding MGP_CASTEiJ_T0026685.1 MGP_CASTEiJ_G0017134.1 mouse_genomes_project 10 130050195 130052724 - MGP_CASTEiJ_P0026685 Dtx3 protein_coding protein_coding MGP_CASTEiJ_T0026686.1 MGP_CASTEiJ_G0017134.1 mouse_genomes_project 10 130050724 130052715 - Dtx3 protein_coding retained_intron MGP_CASTEiJ_T0024303.1 MGP_CASTEiJ_G0016500.1 mouse_genomes_project 10 38799841 38808004 - MGP_CASTEiJ_P0024303 Gtf3c6 protein_coding protein_coding MGP_CASTEiJ_T0025961.1 MGP_CASTEiJ_G0016923.1 mouse_genomes_project 10 84726230 84733829 - MGP_CASTEiJ_P0025961 Ckap4 protein_coding protein_coding MGP_CASTEiJ_T0025962.1 MGP_CASTEiJ_G0016923.1 mouse_genomes_project 10 84726582 84733977 - MGP_CASTEiJ_P0025962 Ckap4 protein_coding protein_coding MGP_CASTEiJ_T0005904.1 MGP_CASTEiJ_G0004956.1 mouse_genomes_project 10 1436124 1444029 + lincRNA lincRNA MGP_CASTEiJ_T0026592.1 MGP_CASTEiJ_G0017103.1 mouse_genomes_project 10 123684031 123789648 - MGP_CASTEiJ_P0026592 Tbc1d30 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026593.1 MGP_CASTEiJ_G0017103.1 mouse_genomes_project 10 123696245 123748959 - MGP_CASTEiJ_P0026593 Tbc1d30 protein_coding protein_coding MGP_CASTEiJ_T0025365.1 MGP_CASTEiJ_G0016782.1 mouse_genomes_project 10 79821799 79828799 + MGP_CASTEiJ_P0025365 Cdc34 protein_coding protein_coding MGP_CASTEiJ_T0025366.1 MGP_CASTEiJ_G0016782.1 mouse_genomes_project 10 79821908 79828799 + MGP_CASTEiJ_P0025366 Cdc34 protein_coding protein_coding MGP_CASTEiJ_T0002984.1 MGP_CASTEiJ_G0002790.1 mouse_genomes_project 10 116639149 116667538 + 4930473D10Rik antisense antisense MGP_CASTEiJ_T0009398.1 MGP_CASTEiJ_G0007586.1 mouse_genomes_project 10 131484825 131484914 + Mir8105 miRNA miRNA MGP_CASTEiJ_T0026784.1 MGP_CASTEiJ_G0017167.1 mouse_genomes_project 10 131002001 131018095 + MGP_CASTEiJ_P0026784 Prim1 protein_coding protein_coding MGP_CASTEiJ_T0026785.1 MGP_CASTEiJ_G0017167.1 mouse_genomes_project 10 131002005 131018149 + MGP_CASTEiJ_P0026785 Prim1 protein_coding protein_coding MGP_CASTEiJ_T0026786.1 MGP_CASTEiJ_G0017167.1 mouse_genomes_project 10 131002029 131017977 + Prim1 protein_coding retained_intron MGP_CASTEiJ_T0026787.1 MGP_CASTEiJ_G0017167.1 mouse_genomes_project 10 131006574 131008720 + Prim1 protein_coding retained_intron MGP_CASTEiJ_T0026788.1 MGP_CASTEiJ_G0017167.1 mouse_genomes_project 10 131014797 131018145 + Prim1 protein_coding retained_intron MGP_CASTEiJ_T0026079.1 MGP_CASTEiJ_G0016957.1 mouse_genomes_project 10 88868288 88900029 - MGP_CASTEiJ_P0026079 Chpt1 protein_coding protein_coding MGP_CASTEiJ_T0026080.1 MGP_CASTEiJ_G0016957.1 mouse_genomes_project 10 88868547 88904458 - MGP_CASTEiJ_P0026080 Chpt1 protein_coding protein_coding MGP_CASTEiJ_T0026084.1 MGP_CASTEiJ_G0016957.1 mouse_genomes_project 10 88891262 88929836 - MGP_CASTEiJ_P0026084 Chpt1 protein_coding protein_coding MGP_CASTEiJ_T0026085.1 MGP_CASTEiJ_G0016957.1 mouse_genomes_project 10 88895808 88929762 - MGP_CASTEiJ_P0026085 Chpt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026086.1 MGP_CASTEiJ_G0016957.1 mouse_genomes_project 10 88896206 88929733 - MGP_CASTEiJ_P0026086 Chpt1 protein_coding protein_coding MGP_CASTEiJ_T0026087.1 MGP_CASTEiJ_G0016957.1 mouse_genomes_project 10 88896206 88929428 - MGP_CASTEiJ_P0026087 Chpt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026088.1 MGP_CASTEiJ_G0016957.1 mouse_genomes_project 10 88896228 88929652 - MGP_CASTEiJ_P0026088 Chpt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026089.1 MGP_CASTEiJ_G0016957.1 mouse_genomes_project 10 88908675 88929681 - MGP_CASTEiJ_P0026089 Chpt1 protein_coding protein_coding MGP_CASTEiJ_T0026090.1 MGP_CASTEiJ_G0016957.1 mouse_genomes_project 10 88910117 88929688 - MGP_CASTEiJ_P0026090 Chpt1 protein_coding protein_coding MGP_CASTEiJ_T0025626.1 MGP_CASTEiJ_G0016839.1 mouse_genomes_project 10 80841053 80847153 + MGP_CASTEiJ_P0025626 Adat3 protein_coding protein_coding MGP_CASTEiJ_T0025629.1 MGP_CASTEiJ_G0016839.1 mouse_genomes_project 10 80845533 80855237 + MGP_CASTEiJ_P0025629 Adat3 protein_coding protein_coding MGP_CASTEiJ_T0024434.1 MGP_CASTEiJ_G0016535.1 mouse_genomes_project 10 42397079 42441982 + MGP_CASTEiJ_P0024434 F930017D23Rik protein_coding protein_coding MGP_CASTEiJ_T0025259.1 MGP_CASTEiJ_G0016745.1 mouse_genomes_project 10 78100892 78107787 + MGP_CASTEiJ_P0025259 1810043G02Rik protein_coding protein_coding MGP_CASTEiJ_T0025260.1 MGP_CASTEiJ_G0016745.1 mouse_genomes_project 10 78101022 78107608 + 1810043G02Rik protein_coding retained_intron MGP_CASTEiJ_T0025261.1 MGP_CASTEiJ_G0016745.1 mouse_genomes_project 10 78101039 78107787 + 1810043G02Rik protein_coding retained_intron MGP_CASTEiJ_T0025262.1 MGP_CASTEiJ_G0016745.1 mouse_genomes_project 10 78101041 78109272 + MGP_CASTEiJ_P0025262 1810043G02Rik protein_coding protein_coding MGP_CASTEiJ_T0025263.1 MGP_CASTEiJ_G0016745.1 mouse_genomes_project 10 78101049 78107789 + 1810043G02Rik protein_coding retained_intron MGP_CASTEiJ_T0025264.1 MGP_CASTEiJ_G0016745.1 mouse_genomes_project 10 78101061 78102893 + 1810043G02Rik protein_coding processed_transcript MGP_CASTEiJ_T0025265.1 MGP_CASTEiJ_G0016745.1 mouse_genomes_project 10 78102863 78106841 + 1810043G02Rik protein_coding processed_transcript MGP_CASTEiJ_T0025266.1 MGP_CASTEiJ_G0016745.1 mouse_genomes_project 10 78104144 78105278 + 1810043G02Rik protein_coding processed_transcript MGP_CASTEiJ_T0026926.1 MGP_CASTEiJ_G0017221.1 mouse_genomes_project 10 132200851 132201935 - MGP_CASTEiJ_P0026926 Olfr769 protein_coding protein_coding MGP_CASTEiJ_T0024426.1 MGP_CASTEiJ_G0016532.1 mouse_genomes_project 10 42272257 42311925 + MGP_CASTEiJ_P0024426 Bend3 protein_coding protein_coding MGP_CASTEiJ_T0024427.1 MGP_CASTEiJ_G0016532.1 mouse_genomes_project 10 42272257 42311925 + MGP_CASTEiJ_P0024427 Bend3 protein_coding protein_coding MGP_CASTEiJ_T0024428.1 MGP_CASTEiJ_G0016532.1 mouse_genomes_project 10 42272657 42308690 + MGP_CASTEiJ_P0024428 Bend3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009385.1 MGP_CASTEiJ_G0007573.1 mouse_genomes_project 10 125146731 125146828 + Mir6412 miRNA miRNA MGP_CASTEiJ_T0026435.1 MGP_CASTEiJ_G0017055.1 mouse_genomes_project 10 114016715 114193644 + MGP_CASTEiJ_P0026435 Kcnc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002954.1 MGP_CASTEiJ_G0002770.1 mouse_genomes_project 10 81304904 81306368 + Gm16099 antisense antisense MGP_CASTEiJ_T0002955.1 MGP_CASTEiJ_G0002770.1 mouse_genomes_project 10 81305176 81306662 + Gm16099 antisense antisense MGP_CASTEiJ_T0026369.1 MGP_CASTEiJ_G0017031.1 mouse_genomes_project 10 107123002 107129678 + Ccdc59 protein_coding retained_intron MGP_CASTEiJ_T0026370.1 MGP_CASTEiJ_G0017031.1 mouse_genomes_project 10 107123002 107129678 + MGP_CASTEiJ_P0026370 Ccdc59 protein_coding protein_coding MGP_CASTEiJ_T0026371.1 MGP_CASTEiJ_G0017031.1 mouse_genomes_project 10 107123439 107124913 + Ccdc59 protein_coding retained_intron MGP_CASTEiJ_T0025165.1 MGP_CASTEiJ_G0016719.1 mouse_genomes_project 10 76587460 76615339 - MGP_CASTEiJ_P0025165 Col6a2 protein_coding protein_coding MGP_CASTEiJ_T0025166.1 MGP_CASTEiJ_G0016719.1 mouse_genomes_project 10 76589501 76615034 - MGP_CASTEiJ_P0025166 Col6a2 protein_coding protein_coding MGP_CASTEiJ_T0025167.1 MGP_CASTEiJ_G0016719.1 mouse_genomes_project 10 76592741 76615034 - Col6a2 protein_coding retained_intron MGP_CASTEiJ_T0026366.1 MGP_CASTEiJ_G0017030.1 mouse_genomes_project 10 107049129 107123314 - MGP_CASTEiJ_P0026366 Mettl25 protein_coding protein_coding MGP_CASTEiJ_T0026367.1 MGP_CASTEiJ_G0017030.1 mouse_genomes_project 10 107049195 107123316 - MGP_CASTEiJ_P0026367 Mettl25 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026368.1 MGP_CASTEiJ_G0017030.1 mouse_genomes_project 10 107109943 107123307 - MGP_CASTEiJ_P0026368 Mettl25 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024229.1 MGP_CASTEiJ_G0016480.1 mouse_genomes_project 10 32681694 32688730 + MGP_CASTEiJ_P0024229 Col10a1 protein_coding protein_coding MGP_CASTEiJ_T0010947.1 MGP_CASTEiJ_G0009135.1 mouse_genomes_project 10 92695427 92695620 - Gm27999 misc_RNA misc_RNA MGP_CASTEiJ_T0002910.1 MGP_CASTEiJ_G0002735.1 mouse_genomes_project 10 15207526 15212327 - Gm20655 antisense antisense MGP_CASTEiJ_T0002911.1 MGP_CASTEiJ_G0002735.1 mouse_genomes_project 10 15210111 15216954 - Gm20655 antisense antisense MGP_CASTEiJ_T0101966.1 MGP_CASTEiJ_G0038691.1 mouse_genomes_project 10 106802602 106802786 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0024719.1 MGP_CASTEiJ_G0016624.1 mouse_genomes_project 10 61162417 61164091 + MGP_CASTEiJ_P0024719 Neurog3 protein_coding protein_coding MGP_CASTEiJ_T0024625.1 MGP_CASTEiJ_G0016600.1 mouse_genomes_project 10 59158927 59539391 - MGP_CASTEiJ_P0024625 Cdh23 protein_coding protein_coding MGP_CASTEiJ_T0024626.1 MGP_CASTEiJ_G0016600.1 mouse_genomes_project 10 59158927 59539391 - MGP_CASTEiJ_P0024626 Cdh23 protein_coding protein_coding MGP_CASTEiJ_T0024627.1 MGP_CASTEiJ_G0016600.1 mouse_genomes_project 10 59158929 59579487 - MGP_CASTEiJ_P0024627 Cdh23 protein_coding protein_coding MGP_CASTEiJ_T0024628.1 MGP_CASTEiJ_G0016600.1 mouse_genomes_project 10 59158929 59579487 - MGP_CASTEiJ_P0024628 Cdh23 protein_coding protein_coding MGP_CASTEiJ_T0024629.1 MGP_CASTEiJ_G0016600.1 mouse_genomes_project 10 59158929 59579487 - MGP_CASTEiJ_P0024629 Cdh23 protein_coding protein_coding MGP_CASTEiJ_T0024630.1 MGP_CASTEiJ_G0016600.1 mouse_genomes_project 10 59159463 59179980 - Cdh23 protein_coding processed_transcript MGP_CASTEiJ_T0024631.1 MGP_CASTEiJ_G0016600.1 mouse_genomes_project 10 59159463 59179980 - Cdh23 protein_coding processed_transcript MGP_CASTEiJ_T0024632.1 MGP_CASTEiJ_G0016600.1 mouse_genomes_project 10 59159488 59539391 - Cdh23 protein_coding retained_intron MGP_CASTEiJ_T0024633.1 MGP_CASTEiJ_G0016600.1 mouse_genomes_project 10 59159488 59539391 - Cdh23 protein_coding retained_intron MGP_CASTEiJ_T0024634.1 MGP_CASTEiJ_G0016600.1 mouse_genomes_project 10 59159541 59161839 - Cdh23 protein_coding retained_intron MGP_CASTEiJ_T0024642.1 MGP_CASTEiJ_G0016600.1 mouse_genomes_project 10 59241604 59253221 - Cdh23 protein_coding retained_intron MGP_CASTEiJ_T0024643.1 MGP_CASTEiJ_G0016600.1 mouse_genomes_project 10 59242923 59272897 - Cdh23 protein_coding processed_transcript MGP_CASTEiJ_T0024644.1 MGP_CASTEiJ_G0016600.1 mouse_genomes_project 10 59243017 59246336 - Cdh23 protein_coding processed_transcript MGP_CASTEiJ_T0024646.1 MGP_CASTEiJ_G0016600.1 mouse_genomes_project 10 59461237 59579487 - Cdh23 protein_coding processed_transcript MGP_CASTEiJ_T0024647.1 MGP_CASTEiJ_G0016600.1 mouse_genomes_project 10 59508060 59535079 - Cdh23 protein_coding processed_transcript MGP_CASTEiJ_T0024648.1 MGP_CASTEiJ_G0016600.1 mouse_genomes_project 10 59539323 59570186 - Cdh23 protein_coding processed_transcript MGP_CASTEiJ_T0100371.1 MGP_CASTEiJ_G0037284.1 mouse_genomes_project 10 47351608 47351737 + Gm23584 snoRNA snoRNA MGP_CASTEiJ_T0025975.1 MGP_CASTEiJ_G0016929.1 mouse_genomes_project 10 85334065 85351095 + MGP_CASTEiJ_P0025975 Tmem263 protein_coding protein_coding MGP_CASTEiJ_T0016388.1 MGP_CASTEiJ_G0014450.1 mouse_genomes_project 10 60562919 60592340 - Gm28447 processed_transcript antisense MGP_CASTEiJ_T0016389.1 MGP_CASTEiJ_G0014450.1 mouse_genomes_project 10 60569218 60570196 - Gm28447 processed_transcript retained_intron MGP_CASTEiJ_T0026938.1 MGP_CASTEiJ_G0017229.1 mouse_genomes_project 10 132419698 132420723 + MGP_CASTEiJ_P0026938 Olfr780 protein_coding protein_coding MGP_CASTEiJ_T0026770.1 MGP_CASTEiJ_G0017158.1 mouse_genomes_project 10 130679038 130689665 + MGP_CASTEiJ_P0026770 Rdh1 protein_coding protein_coding MGP_CASTEiJ_T0025862.1 MGP_CASTEiJ_G0016898.1 mouse_genomes_project 10 81942455 81964752 + BC025920 protein_coding processed_transcript MGP_CASTEiJ_T0025863.1 MGP_CASTEiJ_G0016898.1 mouse_genomes_project 10 81942488 81946027 + MGP_CASTEiJ_P0025863 BC025920 protein_coding protein_coding MGP_CASTEiJ_T0025864.1 MGP_CASTEiJ_G0016898.1 mouse_genomes_project 10 81943068 81945736 + MGP_CASTEiJ_P0025864 BC025920 protein_coding protein_coding MGP_CASTEiJ_T0025865.1 MGP_CASTEiJ_G0016898.1 mouse_genomes_project 10 81943068 81945736 + MGP_CASTEiJ_P0025865 BC025920 protein_coding protein_coding MGP_CASTEiJ_T0025866.1 MGP_CASTEiJ_G0016898.1 mouse_genomes_project 10 81943210 81946000 + MGP_CASTEiJ_P0025866 BC025920 protein_coding protein_coding MGP_CASTEiJ_T0002965.1 MGP_CASTEiJ_G0002777.1 mouse_genomes_project 10 83346202 83349080 - 1700025N21Rik antisense antisense MGP_CASTEiJ_T0002944.1 MGP_CASTEiJ_G0002761.1 mouse_genomes_project 10 76025571 76027315 + Gm16222 antisense antisense MGP_CASTEiJ_T0024279.1 MGP_CASTEiJ_G0016492.1 mouse_genomes_project 10 38238555 38391366 + MGP_CASTEiJ_P0024279 Rev3l protein_coding protein_coding MGP_CASTEiJ_T0024280.1 MGP_CASTEiJ_G0016492.1 mouse_genomes_project 10 38238564 38391323 + MGP_CASTEiJ_P0024280 Rev3l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024281.1 MGP_CASTEiJ_G0016492.1 mouse_genomes_project 10 38238801 38391361 + MGP_CASTEiJ_P0024281 Rev3l protein_coding protein_coding MGP_CASTEiJ_T0024282.1 MGP_CASTEiJ_G0016492.1 mouse_genomes_project 10 38333584 38391363 + MGP_CASTEiJ_P0024282 Rev3l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024283.1 MGP_CASTEiJ_G0016492.1 mouse_genomes_project 10 38336752 38355470 + Rev3l protein_coding retained_intron MGP_CASTEiJ_T0024284.1 MGP_CASTEiJ_G0016492.1 mouse_genomes_project 10 38371577 38375623 + Rev3l protein_coding retained_intron MGP_CASTEiJ_T0024285.1 MGP_CASTEiJ_G0016492.1 mouse_genomes_project 10 38383268 38390643 + Rev3l protein_coding retained_intron MGP_CASTEiJ_T0024081.1 MGP_CASTEiJ_G0016416.1 mouse_genomes_project 10 21632028 21642764 + MGP_CASTEiJ_P0024081 Vnn1 protein_coding protein_coding MGP_CASTEiJ_T0009338.1 MGP_CASTEiJ_G0007526.1 mouse_genomes_project 10 57703260 57703955 + miRNA miRNA MGP_CASTEiJ_T0012070.1 MGP_CASTEiJ_G0010233.1 mouse_genomes_project 10 56823978 56824426 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002914.1 MGP_CASTEiJ_G0002738.1 mouse_genomes_project 10 25378432 25385745 + 4930579H20Rik antisense antisense MGP_CASTEiJ_T0024559.1 MGP_CASTEiJ_G0016579.1 mouse_genomes_project 10 57169503 57235407 + MGP_CASTEiJ_P0024559 Ranbp2 protein_coding protein_coding MGP_CASTEiJ_T0025679.1 MGP_CASTEiJ_G0016859.1 mouse_genomes_project 10 81206016 81207677 + MGP_CASTEiJ_P0025679 Gadd45b protein_coding unknown_likely_coding MGP_CASTEiJ_T0025680.1 MGP_CASTEiJ_G0016859.1 mouse_genomes_project 10 81206030 81208152 + MGP_CASTEiJ_P0025680 Gadd45b protein_coding protein_coding MGP_CASTEiJ_T0016403.1 MGP_CASTEiJ_G0014457.1 mouse_genomes_project 10 130158497 130161070 + processed_transcript processed_transcript MGP_CASTEiJ_T0098310.1 MGP_CASTEiJ_G0035241.1 mouse_genomes_project 10 15444416 15444654 + pseudogene pseudogene MGP_CASTEiJ_T0100375.1 MGP_CASTEiJ_G0037288.1 mouse_genomes_project 10 58613120 58613252 - Gm23803 snoRNA snoRNA MGP_CASTEiJ_T0025670.1 MGP_CASTEiJ_G0016853.1 mouse_genomes_project 10 81098054 81109289 - MGP_CASTEiJ_P0025670 Lingo3 protein_coding protein_coding MGP_CASTEiJ_T0024143.1 MGP_CASTEiJ_G0016443.1 mouse_genomes_project 10 24705719 24818482 + MGP_CASTEiJ_P0024143 Arhgap18 protein_coding protein_coding MGP_CASTEiJ_T0024144.1 MGP_CASTEiJ_G0016443.1 mouse_genomes_project 10 24724350 24881990 + MGP_CASTEiJ_P0024144 Arhgap18 protein_coding protein_coding MGP_CASTEiJ_T0024145.1 MGP_CASTEiJ_G0016443.1 mouse_genomes_project 10 24779745 24806881 + MGP_CASTEiJ_P0024145 Arhgap18 protein_coding protein_coding MGP_CASTEiJ_T0024146.1 MGP_CASTEiJ_G0016443.1 mouse_genomes_project 10 24821030 24881800 + Arhgap18 protein_coding processed_transcript MGP_CASTEiJ_T0025400.1 MGP_CASTEiJ_G0016793.1 mouse_genomes_project 10 80012292 80017410 + protein_coding retained_intron MGP_CASTEiJ_T0025401.1 MGP_CASTEiJ_G0016793.1 mouse_genomes_project 10 80012320 80023135 + protein_coding retained_intron MGP_CASTEiJ_T0025402.1 MGP_CASTEiJ_G0016793.1 mouse_genomes_project 10 80012328 80017311 + protein_coding processed_transcript MGP_CASTEiJ_T0025403.1 MGP_CASTEiJ_G0016793.1 mouse_genomes_project 10 80012339 80023119 + MGP_CASTEiJ_P0025403 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025404.1 MGP_CASTEiJ_G0016793.1 mouse_genomes_project 10 80012352 80016712 + MGP_CASTEiJ_P0025404 protein_coding protein_coding MGP_CASTEiJ_T0025405.1 MGP_CASTEiJ_G0016793.1 mouse_genomes_project 10 80012354 80016742 + protein_coding processed_transcript MGP_CASTEiJ_T0025406.1 MGP_CASTEiJ_G0016793.1 mouse_genomes_project 10 80012354 80017062 + MGP_CASTEiJ_P0025406 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025407.1 MGP_CASTEiJ_G0016793.1 mouse_genomes_project 10 80012401 80022738 + MGP_CASTEiJ_P0025407 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025408.1 MGP_CASTEiJ_G0016793.1 mouse_genomes_project 10 80012401 80018721 + MGP_CASTEiJ_P0025408 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025409.1 MGP_CASTEiJ_G0016793.1 mouse_genomes_project 10 80012725 80016794 + MGP_CASTEiJ_P0025409 protein_coding protein_coding MGP_CASTEiJ_T0025410.1 MGP_CASTEiJ_G0016793.1 mouse_genomes_project 10 80016469 80017085 + MGP_CASTEiJ_P0025410 protein_coding protein_coding MGP_CASTEiJ_T0025411.1 MGP_CASTEiJ_G0016793.1 mouse_genomes_project 10 80016691 80017823 + protein_coding retained_intron MGP_CASTEiJ_T0025412.1 MGP_CASTEiJ_G0016793.1 mouse_genomes_project 10 80017347 80020755 + MGP_CASTEiJ_P0025412 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025414.1 MGP_CASTEiJ_G0016793.1 mouse_genomes_project 10 80019439 80020752 + protein_coding retained_intron MGP_CASTEiJ_T0009380.1 MGP_CASTEiJ_G0007568.1 mouse_genomes_project 10 109833735 109833829 + Gm25591 miRNA miRNA MGP_CASTEiJ_T0025103.1 MGP_CASTEiJ_G0016697.1 mouse_genomes_project 10 75687493 75704510 - MGP_CASTEiJ_P0025103 Gstt1 protein_coding protein_coding MGP_CASTEiJ_T0025104.1 MGP_CASTEiJ_G0016697.1 mouse_genomes_project 10 75687664 75703506 - MGP_CASTEiJ_P0025104 Gstt1 protein_coding protein_coding MGP_CASTEiJ_T0025105.1 MGP_CASTEiJ_G0016697.1 mouse_genomes_project 10 75690475 75703657 - MGP_CASTEiJ_P0025105 Gstt1 protein_coding protein_coding MGP_CASTEiJ_T0098316.1 MGP_CASTEiJ_G0035247.1 mouse_genomes_project 10 72887009 72887481 + pseudogene pseudogene MGP_CASTEiJ_T0026218.1 MGP_CASTEiJ_G0016983.1 mouse_genomes_project 10 94251657 94298286 + MGP_CASTEiJ_P0026218 Ccdc38 protein_coding protein_coding MGP_CASTEiJ_T0026219.1 MGP_CASTEiJ_G0016983.1 mouse_genomes_project 10 94256492 94296541 + MGP_CASTEiJ_P0026219 Ccdc38 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026220.1 MGP_CASTEiJ_G0016983.1 mouse_genomes_project 10 94261074 94267872 + Ccdc38 protein_coding retained_intron MGP_CASTEiJ_T0026221.1 MGP_CASTEiJ_G0016983.1 mouse_genomes_project 10 94267193 94267917 + Ccdc38 protein_coding retained_intron MGP_CASTEiJ_T0026222.1 MGP_CASTEiJ_G0016983.1 mouse_genomes_project 10 94267196 94297047 + Ccdc38 protein_coding processed_transcript MGP_CASTEiJ_T0026223.1 MGP_CASTEiJ_G0016983.1 mouse_genomes_project 10 94278924 94288068 + Ccdc38 protein_coding processed_transcript MGP_CASTEiJ_T0026847.1 MGP_CASTEiJ_G0017186.1 mouse_genomes_project 10 131419099 131423637 - MGP_CASTEiJ_P0026847 Slc39a5 protein_coding protein_coding MGP_CASTEiJ_T0026848.1 MGP_CASTEiJ_G0017186.1 mouse_genomes_project 10 131419099 131424397 - MGP_CASTEiJ_P0026848 Slc39a5 protein_coding protein_coding MGP_CASTEiJ_T0025190.1 MGP_CASTEiJ_G0016724.1 mouse_genomes_project 10 77079134 77198801 - MGP_CASTEiJ_P0025190 Col18a1 protein_coding protein_coding MGP_CASTEiJ_T0025191.1 MGP_CASTEiJ_G0016724.1 mouse_genomes_project 10 77079137 77144726 - MGP_CASTEiJ_P0025191 Col18a1 protein_coding protein_coding MGP_CASTEiJ_T0025192.1 MGP_CASTEiJ_G0016724.1 mouse_genomes_project 10 77079970 77144755 - MGP_CASTEiJ_P0025192 Col18a1 protein_coding protein_coding MGP_CASTEiJ_T0025193.1 MGP_CASTEiJ_G0016724.1 mouse_genomes_project 10 77108074 77116641 - MGP_CASTEiJ_P0025193 Col18a1 protein_coding protein_coding MGP_CASTEiJ_T0025194.1 MGP_CASTEiJ_G0016724.1 mouse_genomes_project 10 77123463 77144996 - MGP_CASTEiJ_P0025194 Col18a1 protein_coding protein_coding MGP_CASTEiJ_T0024160.1 MGP_CASTEiJ_G0016446.1 mouse_genomes_project 10 26710316 26944700 + MGP_CASTEiJ_P0024160 Themis protein_coding protein_coding MGP_CASTEiJ_T0024161.1 MGP_CASTEiJ_G0016446.1 mouse_genomes_project 10 26710316 26837498 + MGP_CASTEiJ_P0024161 Themis protein_coding protein_coding MGP_CASTEiJ_T0024162.1 MGP_CASTEiJ_G0016446.1 mouse_genomes_project 10 26710351 26810690 + Themis protein_coding retained_intron MGP_CASTEiJ_T0024163.1 MGP_CASTEiJ_G0016446.1 mouse_genomes_project 10 26710353 26845393 + MGP_CASTEiJ_P0024163 Themis protein_coding protein_coding MGP_CASTEiJ_T0024164.1 MGP_CASTEiJ_G0016446.1 mouse_genomes_project 10 26710583 26944703 + MGP_CASTEiJ_P0024164 Themis protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024165.1 MGP_CASTEiJ_G0016446.1 mouse_genomes_project 10 26710589 26828301 + MGP_CASTEiJ_P0024165 Themis protein_coding protein_coding MGP_CASTEiJ_T0024166.1 MGP_CASTEiJ_G0016446.1 mouse_genomes_project 10 26710589 26783570 + MGP_CASTEiJ_P0024166 Themis protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0005960.1 MGP_CASTEiJ_G0005000.1 mouse_genomes_project 10 87035254 87045144 + lincRNA lincRNA MGP_CASTEiJ_T0026838.1 MGP_CASTEiJ_G0017181.1 mouse_genomes_project 10 131318704 131338843 + MGP_CASTEiJ_P0026838 Pan2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026839.1 MGP_CASTEiJ_G0017181.1 mouse_genomes_project 10 131318707 131338849 + MGP_CASTEiJ_P0026839 Pan2 protein_coding protein_coding MGP_CASTEiJ_T0100358.1 MGP_CASTEiJ_G0037271.1 mouse_genomes_project 10 23136523 23136652 - Gm25016 snoRNA snoRNA MGP_CASTEiJ_T0009357.1 MGP_CASTEiJ_G0007545.1 mouse_genomes_project 10 80848758 80848828 + Mir6912 miRNA miRNA MGP_CASTEiJ_T0026502.1 MGP_CASTEiJ_G0017080.1 mouse_genomes_project 10 119326540 119335464 - MGP_CASTEiJ_P0026502 Yeats4 protein_coding protein_coding MGP_CASTEiJ_T0012076.1 MGP_CASTEiJ_G0010239.1 mouse_genomes_project 10 60252872 60253313 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024223.1 MGP_CASTEiJ_G0016478.1 mouse_genomes_project 10 32581365 32608837 - Nt5dc1 protein_coding processed_transcript MGP_CASTEiJ_T0024225.1 MGP_CASTEiJ_G0016478.1 mouse_genomes_project 10 32597656 32711517 - MGP_CASTEiJ_P0024225 Nt5dc1 protein_coding protein_coding MGP_CASTEiJ_T0024226.1 MGP_CASTEiJ_G0016478.1 mouse_genomes_project 10 32597656 32711504 - MGP_CASTEiJ_P0024226 Nt5dc1 protein_coding protein_coding MGP_CASTEiJ_T0024227.1 MGP_CASTEiJ_G0016478.1 mouse_genomes_project 10 32598312 32711493 - Nt5dc1 protein_coding processed_transcript MGP_CASTEiJ_T0024228.1 MGP_CASTEiJ_G0016478.1 mouse_genomes_project 10 32643062 32711447 - MGP_CASTEiJ_P0024228 Nt5dc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024230.1 MGP_CASTEiJ_G0016478.1 mouse_genomes_project 10 32688710 32711446 - MGP_CASTEiJ_P0024230 Nt5dc1 protein_coding protein_coding MGP_CASTEiJ_T0026956.1 MGP_CASTEiJ_G0017244.1 mouse_genomes_project 10 132773115 132777915 - MGP_CASTEiJ_P0026956 Olfr802 protein_coding protein_coding MGP_CASTEiJ_T0026708.1 MGP_CASTEiJ_G0017142.1 mouse_genomes_project 10 130202999 130214684 - MGP_CASTEiJ_P0026708 Gli1 protein_coding protein_coding MGP_CASTEiJ_T0023702.1 MGP_CASTEiJ_G0016319.1 mouse_genomes_project 10 1294075 1401003 + MGP_CASTEiJ_P0023702 Akap12 protein_coding protein_coding MGP_CASTEiJ_T0100406.1 MGP_CASTEiJ_G0037319.1 mouse_genomes_project 10 132391760 132391894 + Gm25764 snoRNA snoRNA MGP_CASTEiJ_T0026308.1 MGP_CASTEiJ_G0017014.1 mouse_genomes_project 10 100160859 100161988 - MGP_CASTEiJ_P0026308 Phxr2 protein_coding protein_coding MGP_CASTEiJ_T0100390.1 MGP_CASTEiJ_G0037303.1 mouse_genomes_project 10 104369209 104369343 + Gm25376 snoRNA snoRNA MGP_CASTEiJ_T0005962.1 MGP_CASTEiJ_G0005002.1 mouse_genomes_project 10 90199597 90215548 + 1500026H17Rik lincRNA lincRNA MGP_CASTEiJ_T0002972.1 MGP_CASTEiJ_G0002783.1 mouse_genomes_project 10 87335880 87397391 + Gm16271 antisense antisense MGP_CASTEiJ_T0024619.1 MGP_CASTEiJ_G0016599.1 mouse_genomes_project 10 59133220 59158774 + MGP_CASTEiJ_P0024619 Psap protein_coding protein_coding MGP_CASTEiJ_T0024620.1 MGP_CASTEiJ_G0016599.1 mouse_genomes_project 10 59133221 59158777 + MGP_CASTEiJ_P0024620 Psap protein_coding protein_coding MGP_CASTEiJ_T0024621.1 MGP_CASTEiJ_G0016599.1 mouse_genomes_project 10 59133221 59158777 + MGP_CASTEiJ_P0024621 Psap protein_coding protein_coding MGP_CASTEiJ_T0024622.1 MGP_CASTEiJ_G0016599.1 mouse_genomes_project 10 59133221 59158777 + MGP_CASTEiJ_P0024622 Psap protein_coding protein_coding MGP_CASTEiJ_T0024623.1 MGP_CASTEiJ_G0016599.1 mouse_genomes_project 10 59133271 59158784 + MGP_CASTEiJ_P0024623 Psap protein_coding unknown_likely_coding MGP_CASTEiJ_T0024624.1 MGP_CASTEiJ_G0016599.1 mouse_genomes_project 10 59140036 59158777 + MGP_CASTEiJ_P0024624 Psap protein_coding protein_coding MGP_CASTEiJ_T0026806.1 MGP_CASTEiJ_G0017173.1 mouse_genomes_project 10 131195508 131212231 + MGP_CASTEiJ_P0026806 Gls2 protein_coding protein_coding MGP_CASTEiJ_T0026807.1 MGP_CASTEiJ_G0017173.1 mouse_genomes_project 10 131197245 131201643 + MGP_CASTEiJ_P0026807 Gls2 protein_coding protein_coding MGP_CASTEiJ_T0026808.1 MGP_CASTEiJ_G0017173.1 mouse_genomes_project 10 131197327 131212226 + MGP_CASTEiJ_P0026808 Gls2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026809.1 MGP_CASTEiJ_G0017173.1 mouse_genomes_project 10 131197330 131202020 + Gls2 protein_coding processed_transcript MGP_CASTEiJ_T0026810.1 MGP_CASTEiJ_G0017173.1 mouse_genomes_project 10 131197334 131212296 + MGP_CASTEiJ_P0026810 Gls2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026811.1 MGP_CASTEiJ_G0017173.1 mouse_genomes_project 10 131197356 131212226 + MGP_CASTEiJ_P0026811 Gls2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026812.1 MGP_CASTEiJ_G0017173.1 mouse_genomes_project 10 131197414 131202178 + Gls2 protein_coding retained_intron MGP_CASTEiJ_T0026813.1 MGP_CASTEiJ_G0017173.1 mouse_genomes_project 10 131205530 131206470 + Gls2 protein_coding retained_intron MGP_CASTEiJ_T0026814.1 MGP_CASTEiJ_G0017173.1 mouse_genomes_project 10 131205961 131209292 + Gls2 protein_coding processed_transcript MGP_CASTEiJ_T0026815.1 MGP_CASTEiJ_G0017173.1 mouse_genomes_project 10 131206042 131212234 + Gls2 protein_coding retained_intron MGP_CASTEiJ_T0026816.1 MGP_CASTEiJ_G0017173.1 mouse_genomes_project 10 131209213 131212022 + MGP_CASTEiJ_P0026816 Gls2 protein_coding protein_coding MGP_CASTEiJ_T0024035.1 MGP_CASTEiJ_G0016400.1 mouse_genomes_project 10 18563584 18706490 + MGP_CASTEiJ_P0024035 Ahi1 protein_coding protein_coding MGP_CASTEiJ_T0024036.1 MGP_CASTEiJ_G0016400.1 mouse_genomes_project 10 18662042 18706490 + MGP_CASTEiJ_P0024036 Ahi1 protein_coding protein_coding MGP_CASTEiJ_T0002959.1 MGP_CASTEiJ_G0002772.1 mouse_genomes_project 10 81604814 81606031 - Gm16315 antisense antisense MGP_CASTEiJ_T0025238.1 MGP_CASTEiJ_G0016733.1 mouse_genomes_project 10 77771777 77772887 - MGP_CASTEiJ_P0025238 Gm19402 protein_coding protein_coding MGP_CASTEiJ_T0005964.1 MGP_CASTEiJ_G0005004.1 mouse_genomes_project 10 92691397 92724110 - Rmst lincRNA lincRNA MGP_CASTEiJ_T0005965.1 MGP_CASTEiJ_G0005004.1 mouse_genomes_project 10 92691403 92692073 - Rmst lincRNA lincRNA MGP_CASTEiJ_T0005966.1 MGP_CASTEiJ_G0005004.1 mouse_genomes_project 10 92691491 92723963 - Rmst lincRNA lincRNA MGP_CASTEiJ_T0005967.1 MGP_CASTEiJ_G0005004.1 mouse_genomes_project 10 92695381 92695888 - Rmst lincRNA lincRNA MGP_CASTEiJ_T0005968.1 MGP_CASTEiJ_G0005004.1 mouse_genomes_project 10 92702070 92789892 - Rmst lincRNA lincRNA MGP_CASTEiJ_T0005969.1 MGP_CASTEiJ_G0005004.1 mouse_genomes_project 10 92702070 92790293 - Rmst lincRNA lincRNA MGP_CASTEiJ_T0005970.1 MGP_CASTEiJ_G0005004.1 mouse_genomes_project 10 92704212 92789810 - Rmst lincRNA lincRNA MGP_CASTEiJ_T0005971.1 MGP_CASTEiJ_G0005004.1 mouse_genomes_project 10 92756554 92790290 - Rmst lincRNA lincRNA MGP_CASTEiJ_T0005972.1 MGP_CASTEiJ_G0005004.1 mouse_genomes_project 10 92758285 92759582 - Rmst lincRNA lincRNA MGP_CASTEiJ_T0005973.1 MGP_CASTEiJ_G0005004.1 mouse_genomes_project 10 92758305 92788305 - Rmst lincRNA lincRNA MGP_CASTEiJ_T0005974.1 MGP_CASTEiJ_G0005004.1 mouse_genomes_project 10 92758331 92790097 - Rmst lincRNA lincRNA MGP_CASTEiJ_T0005976.1 MGP_CASTEiJ_G0005004.1 mouse_genomes_project 10 92787266 92787326 - Rmst lincRNA misc_RNA MGP_CASTEiJ_T0005977.1 MGP_CASTEiJ_G0005004.1 mouse_genomes_project 10 92787266 92787923 - Rmst lincRNA lincRNA MGP_CASTEiJ_T0005978.1 MGP_CASTEiJ_G0005004.1 mouse_genomes_project 10 92787309 92790293 - Rmst lincRNA lincRNA MGP_CASTEiJ_T0026316.1 MGP_CASTEiJ_G0017018.1 mouse_genomes_project 10 101105166 101205619 + MGP_CASTEiJ_P0026316 Kitl protein_coding protein_coding MGP_CASTEiJ_T0026317.1 MGP_CASTEiJ_G0017018.1 mouse_genomes_project 10 101105362 101181669 + MGP_CASTEiJ_P0026317 Kitl protein_coding protein_coding MGP_CASTEiJ_T0026318.1 MGP_CASTEiJ_G0017018.1 mouse_genomes_project 10 101105452 101201610 + MGP_CASTEiJ_P0026318 Kitl protein_coding protein_coding MGP_CASTEiJ_T0026594.1 MGP_CASTEiJ_G0017104.1 mouse_genomes_project 10 123809258 123841899 + MGP_CASTEiJ_P0026594 Gns protein_coding unknown_likely_coding MGP_CASTEiJ_T0026595.1 MGP_CASTEiJ_G0017104.1 mouse_genomes_project 10 123809262 123845954 + MGP_CASTEiJ_P0026595 Gns protein_coding protein_coding MGP_CASTEiJ_T0026596.1 MGP_CASTEiJ_G0017104.1 mouse_genomes_project 10 123809363 123845961 + MGP_CASTEiJ_P0026596 Gns protein_coding unknown_likely_coding MGP_CASTEiJ_T0012047.1 MGP_CASTEiJ_G0010210.1 mouse_genomes_project 10 18926098 18927560 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024947.1 MGP_CASTEiJ_G0016668.1 mouse_genomes_project 10 69779403 69826090 + MGP_CASTEiJ_P0024947 Slc16a9 protein_coding protein_coding MGP_CASTEiJ_T0024948.1 MGP_CASTEiJ_G0016668.1 mouse_genomes_project 10 69804759 69824320 + Slc16a9 protein_coding retained_intron MGP_CASTEiJ_T0026615.1 MGP_CASTEiJ_G0017111.1 mouse_genomes_project 10 124599290 124616876 - MGP_CASTEiJ_P0026615 Tmem5 protein_coding protein_coding MGP_CASTEiJ_T0026616.1 MGP_CASTEiJ_G0017111.1 mouse_genomes_project 10 124601946 124616661 - MGP_CASTEiJ_P0026616 Tmem5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026617.1 MGP_CASTEiJ_G0017111.1 mouse_genomes_project 10 124602368 124608872 - Tmem5 protein_coding retained_intron MGP_CASTEiJ_T0026618.1 MGP_CASTEiJ_G0017111.1 mouse_genomes_project 10 124608127 124610173 - Tmem5 protein_coding retained_intron MGP_CASTEiJ_T0026619.1 MGP_CASTEiJ_G0017111.1 mouse_genomes_project 10 124608504 124615641 - Tmem5 protein_coding retained_intron MGP_CASTEiJ_T0026620.1 MGP_CASTEiJ_G0017111.1 mouse_genomes_project 10 124615560 124616631 - Tmem5 protein_coding processed_transcript MGP_CASTEiJ_T0023806.1 MGP_CASTEiJ_G0016340.1 mouse_genomes_project 10 4787234 4823929 + MGP_CASTEiJ_P0023806 Lats1 protein_coding protein_coding MGP_CASTEiJ_T0023807.1 MGP_CASTEiJ_G0016340.1 mouse_genomes_project 10 4797245 4821061 + MGP_CASTEiJ_P0023807 Lats1 protein_coding protein_coding MGP_CASTEiJ_T0024469.1 MGP_CASTEiJ_G0016548.1 mouse_genomes_project 10 49840342 49860531 + MGP_CASTEiJ_P0024469 Sim1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024470.1 MGP_CASTEiJ_G0016548.1 mouse_genomes_project 10 49840749 49940315 + MGP_CASTEiJ_P0024470 Sim1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026133.1 MGP_CASTEiJ_G0016970.1 mouse_genomes_project 10 90262233 90340940 + MGP_CASTEiJ_P0026133 Uhrf1bp1l protein_coding protein_coding MGP_CASTEiJ_T0012073.1 MGP_CASTEiJ_G0010236.1 mouse_genomes_project 10 58507109 58507358 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024952.1 MGP_CASTEiJ_G0016670.1 mouse_genomes_project 10 70133354 70179686 - MGP_CASTEiJ_P0024952 Phyhipl protein_coding protein_coding MGP_CASTEiJ_T0024953.1 MGP_CASTEiJ_G0016670.1 mouse_genomes_project 10 70134346 70240888 - MGP_CASTEiJ_P0024953 Phyhipl protein_coding protein_coding MGP_CASTEiJ_T0024954.1 MGP_CASTEiJ_G0016670.1 mouse_genomes_project 10 70138458 70179661 - Phyhipl protein_coding retained_intron MGP_CASTEiJ_T0024955.1 MGP_CASTEiJ_G0016670.1 mouse_genomes_project 10 70142413 70179869 - Phyhipl protein_coding retained_intron MGP_CASTEiJ_T0024956.1 MGP_CASTEiJ_G0016670.1 mouse_genomes_project 10 70145499 70240895 - MGP_CASTEiJ_P0024956 Phyhipl protein_coding protein_coding MGP_CASTEiJ_T0024957.1 MGP_CASTEiJ_G0016670.1 mouse_genomes_project 10 70181626 70236860 - Phyhipl protein_coding processed_transcript MGP_CASTEiJ_T0024958.1 MGP_CASTEiJ_G0016670.1 mouse_genomes_project 10 70181710 70240893 - Phyhipl protein_coding processed_transcript MGP_CASTEiJ_T0024959.1 MGP_CASTEiJ_G0016670.1 mouse_genomes_project 10 70187506 70187981 - Phyhipl protein_coding processed_transcript MGP_CASTEiJ_T0024960.1 MGP_CASTEiJ_G0016670.1 mouse_genomes_project 10 70188016 70208472 - Phyhipl protein_coding processed_transcript MGP_CASTEiJ_T0002953.1 MGP_CASTEiJ_G0002769.1 mouse_genomes_project 10 81022527 81025863 - Gm17151 antisense antisense MGP_CASTEiJ_T0026840.1 MGP_CASTEiJ_G0017182.1 mouse_genomes_project 10 131339942 131344311 + MGP_CASTEiJ_P0026840 Cnpy2 protein_coding protein_coding MGP_CASTEiJ_T0024502.1 MGP_CASTEiJ_G0016565.1 mouse_genomes_project 10 52633251 52754408 - MGP_CASTEiJ_P0024502 Fam184a protein_coding protein_coding MGP_CASTEiJ_T0024503.1 MGP_CASTEiJ_G0016565.1 mouse_genomes_project 10 52633472 52692278 - MGP_CASTEiJ_P0024503 Fam184a protein_coding protein_coding MGP_CASTEiJ_T0024504.1 MGP_CASTEiJ_G0016565.1 mouse_genomes_project 10 52633475 52656669 - MGP_CASTEiJ_P0024504 Fam184a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024505.1 MGP_CASTEiJ_G0016565.1 mouse_genomes_project 10 52633476 52696791 - MGP_CASTEiJ_P0024505 Fam184a protein_coding protein_coding MGP_CASTEiJ_T0024506.1 MGP_CASTEiJ_G0016565.1 mouse_genomes_project 10 52633737 52648159 - MGP_CASTEiJ_P0024506 Fam184a protein_coding protein_coding MGP_CASTEiJ_T0024507.1 MGP_CASTEiJ_G0016565.1 mouse_genomes_project 10 52633741 52639366 - MGP_CASTEiJ_P0024507 Fam184a protein_coding protein_coding MGP_CASTEiJ_T0024508.1 MGP_CASTEiJ_G0016565.1 mouse_genomes_project 10 52639276 52676010 - Fam184a protein_coding processed_transcript MGP_CASTEiJ_T0024509.1 MGP_CASTEiJ_G0016565.1 mouse_genomes_project 10 52694453 52754437 - Fam184a protein_coding retained_intron MGP_CASTEiJ_T0026834.1 MGP_CASTEiJ_G0017178.1 mouse_genomes_project 10 131282673 131284838 + MGP_CASTEiJ_P0026834 Apof protein_coding protein_coding MGP_CASTEiJ_T0100381.1 MGP_CASTEiJ_G0037294.1 mouse_genomes_project 10 78038587 78038663 - Gm22394 snoRNA snoRNA MGP_CASTEiJ_T0002940.1 MGP_CASTEiJ_G0002757.1 mouse_genomes_project 10 69824478 69825190 - Gm7097 antisense antisense MGP_CASTEiJ_T0023860.1 MGP_CASTEiJ_G0016355.1 mouse_genomes_project 10 8358749 8399509 + MGP_CASTEiJ_P0023860 Shprh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023861.1 MGP_CASTEiJ_G0016355.1 mouse_genomes_project 10 8358752 8433265 + MGP_CASTEiJ_P0023861 Shprh protein_coding protein_coding MGP_CASTEiJ_T0023862.1 MGP_CASTEiJ_G0016355.1 mouse_genomes_project 10 8358795 8363855 + Shprh protein_coding retained_intron MGP_CASTEiJ_T0023863.1 MGP_CASTEiJ_G0016355.1 mouse_genomes_project 10 8358846 8425226 + MGP_CASTEiJ_P0023863 Shprh protein_coding protein_coding MGP_CASTEiJ_T0023864.1 MGP_CASTEiJ_G0016355.1 mouse_genomes_project 10 8358846 8425226 + MGP_CASTEiJ_P0023864 Shprh protein_coding protein_coding MGP_CASTEiJ_T0023865.1 MGP_CASTEiJ_G0016355.1 mouse_genomes_project 10 8373681 8379403 + MGP_CASTEiJ_P0023865 Shprh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023866.1 MGP_CASTEiJ_G0016355.1 mouse_genomes_project 10 8375794 8429961 + Shprh protein_coding retained_intron MGP_CASTEiJ_T0023867.1 MGP_CASTEiJ_G0016355.1 mouse_genomes_project 10 8419142 8425285 + Shprh protein_coding retained_intron MGP_CASTEiJ_T0026277.1 MGP_CASTEiJ_G0016996.1 mouse_genomes_project 10 95590700 95743969 - MGP_CASTEiJ_P0026277 Plxnc1 protein_coding protein_coding MGP_CASTEiJ_T0026278.1 MGP_CASTEiJ_G0016996.1 mouse_genomes_project 10 95637254 95643879 - Plxnc1 protein_coding retained_intron MGP_CASTEiJ_T0026279.1 MGP_CASTEiJ_G0016996.1 mouse_genomes_project 10 95654744 95670976 - MGP_CASTEiJ_P0026279 Plxnc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026280.1 MGP_CASTEiJ_G0016996.1 mouse_genomes_project 10 95670757 95721948 - Plxnc1 protein_coding retained_intron MGP_CASTEiJ_T0005907.1 MGP_CASTEiJ_G0004959.1 mouse_genomes_project 10 7204737 7371481 + Gm28905 lincRNA lincRNA MGP_CASTEiJ_T0024289.1 MGP_CASTEiJ_G0016495.1 mouse_genomes_project 10 38477854 38489890 - MGP_CASTEiJ_P0024289 protein_coding protein_coding MGP_CASTEiJ_T0026091.1 MGP_CASTEiJ_G0016959.1 mouse_genomes_project 10 88945236 89037584 - MGP_CASTEiJ_P0026091 Mybpc1 protein_coding protein_coding MGP_CASTEiJ_T0026092.1 MGP_CASTEiJ_G0016959.1 mouse_genomes_project 10 88945239 88950191 - Mybpc1 protein_coding retained_intron MGP_CASTEiJ_T0026093.1 MGP_CASTEiJ_G0016959.1 mouse_genomes_project 10 88945296 89037457 - MGP_CASTEiJ_P0026093 Mybpc1 protein_coding protein_coding MGP_CASTEiJ_T0026094.1 MGP_CASTEiJ_G0016959.1 mouse_genomes_project 10 88946347 88967918 - MGP_CASTEiJ_P0026094 Mybpc1 protein_coding protein_coding MGP_CASTEiJ_T0026095.1 MGP_CASTEiJ_G0016959.1 mouse_genomes_project 10 88953221 88967970 - Mybpc1 protein_coding retained_intron MGP_CASTEiJ_T0026096.1 MGP_CASTEiJ_G0016959.1 mouse_genomes_project 10 88953312 88984788 - MGP_CASTEiJ_P0026096 Mybpc1 protein_coding protein_coding MGP_CASTEiJ_T0005931.1 MGP_CASTEiJ_G0004978.1 mouse_genomes_project 10 56508895 56516886 - 4930467K11Rik lincRNA lincRNA MGP_CASTEiJ_T0026054.1 MGP_CASTEiJ_G0016952.1 mouse_genomes_project 10 88485529 88539960 - MGP_CASTEiJ_P0026054 Parpbp protein_coding protein_coding MGP_CASTEiJ_T0026055.1 MGP_CASTEiJ_G0016952.1 mouse_genomes_project 10 88516918 88539897 - MGP_CASTEiJ_P0026055 Parpbp protein_coding protein_coding MGP_CASTEiJ_T0026056.1 MGP_CASTEiJ_G0016952.1 mouse_genomes_project 10 88516938 88539952 - MGP_CASTEiJ_P0026056 Parpbp protein_coding protein_coding MGP_CASTEiJ_T0026057.1 MGP_CASTEiJ_G0016952.1 mouse_genomes_project 10 88523138 88539897 - MGP_CASTEiJ_P0026057 Parpbp protein_coding protein_coding MGP_CASTEiJ_T0009373.1 MGP_CASTEiJ_G0007561.1 mouse_genomes_project 10 95368049 95368112 - Mir7211 miRNA miRNA MGP_CASTEiJ_T0026641.1 MGP_CASTEiJ_G0017120.1 mouse_genomes_project 10 129809505 129834042 + MGP_CASTEiJ_P0026641 Ctdsp2 protein_coding protein_coding MGP_CASTEiJ_T0026642.1 MGP_CASTEiJ_G0017120.1 mouse_genomes_project 10 129829820 129834042 + MGP_CASTEiJ_P0026642 Ctdsp2 protein_coding protein_coding MGP_CASTEiJ_T0025694.1 MGP_CASTEiJ_G0016863.1 mouse_genomes_project 10 81323932 81340232 - MGP_CASTEiJ_P0025694 Sgta protein_coding unknown_likely_coding MGP_CASTEiJ_T0025695.1 MGP_CASTEiJ_G0016863.1 mouse_genomes_project 10 81323938 81340234 - MGP_CASTEiJ_P0025695 Sgta protein_coding protein_coding MGP_CASTEiJ_T0024510.1 MGP_CASTEiJ_G0016566.1 mouse_genomes_project 10 52892052 53073044 - MGP_CASTEiJ_P0024510 Man1a protein_coding protein_coding MGP_CASTEiJ_T0024511.1 MGP_CASTEiJ_G0016566.1 mouse_genomes_project 10 52894276 53072957 - MGP_CASTEiJ_P0024511 Man1a protein_coding protein_coding MGP_CASTEiJ_T0024512.1 MGP_CASTEiJ_G0016566.1 mouse_genomes_project 10 52906427 53072352 - MGP_CASTEiJ_P0024512 Man1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0024513.1 MGP_CASTEiJ_G0016566.1 mouse_genomes_project 10 52963768 53072957 - Man1a protein_coding retained_intron MGP_CASTEiJ_T0024514.1 MGP_CASTEiJ_G0016566.1 mouse_genomes_project 10 52996044 53072984 - MGP_CASTEiJ_P0024514 Man1a protein_coding protein_coding MGP_CASTEiJ_T0024515.1 MGP_CASTEiJ_G0016566.1 mouse_genomes_project 10 53004537 53072985 - Man1a protein_coding retained_intron MGP_CASTEiJ_T0099175.1 MGP_CASTEiJ_G0036088.1 mouse_genomes_project 10 53290316 53290428 - Gm26177 snRNA snRNA MGP_CASTEiJ_T0023921.1 MGP_CASTEiJ_G0016367.1 mouse_genomes_project 10 10836732 10847266 + MGP_CASTEiJ_P0023921 Adat2 protein_coding protein_coding MGP_CASTEiJ_T0012057.1 MGP_CASTEiJ_G0010220.1 mouse_genomes_project 10 38432077 38432743 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024127.1 MGP_CASTEiJ_G0016437.1 mouse_genomes_project 10 23243512 23405915 + MGP_CASTEiJ_P0024127 Epb41l2 protein_coding protein_coding MGP_CASTEiJ_T0024128.1 MGP_CASTEiJ_G0016437.1 mouse_genomes_project 10 23295364 23405915 + MGP_CASTEiJ_P0024128 Epb41l2 protein_coding protein_coding MGP_CASTEiJ_T0024129.1 MGP_CASTEiJ_G0016437.1 mouse_genomes_project 10 23320888 23393831 + MGP_CASTEiJ_P0024129 Epb41l2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024130.1 MGP_CASTEiJ_G0016437.1 mouse_genomes_project 10 23321312 23373530 + MGP_CASTEiJ_P0024130 Epb41l2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024131.1 MGP_CASTEiJ_G0016437.1 mouse_genomes_project 10 23375091 23405918 + MGP_CASTEiJ_P0024131 Epb41l2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024090.1 MGP_CASTEiJ_G0016425.1 mouse_genomes_project 10 21801717 21803039 + MGP_CASTEiJ_P0024090 protein_coding protein_coding MGP_CASTEiJ_T0026105.1 MGP_CASTEiJ_G0016963.1 mouse_genomes_project 10 89336697 89384131 + MGP_CASTEiJ_P0026105 Slc5a8 protein_coding protein_coding MGP_CASTEiJ_T0026106.1 MGP_CASTEiJ_G0016963.1 mouse_genomes_project 10 89336976 89352712 + MGP_CASTEiJ_P0026106 Slc5a8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009389.1 MGP_CASTEiJ_G0007577.1 mouse_genomes_project 10 128792905 128792978 + Gm22183 miRNA miRNA MGP_CASTEiJ_T0023691.1 MGP_CASTEiJ_G0016317.1 mouse_genomes_project 10 716105 930705 + Plekhg1 protein_coding retained_intron MGP_CASTEiJ_T0023692.1 MGP_CASTEiJ_G0016317.1 mouse_genomes_project 10 716356 930694 + Plekhg1 protein_coding retained_intron MGP_CASTEiJ_T0023693.1 MGP_CASTEiJ_G0016317.1 mouse_genomes_project 10 854072 959190 + MGP_CASTEiJ_P0023693 Plekhg1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023694.1 MGP_CASTEiJ_G0016317.1 mouse_genomes_project 10 863965 956449 + MGP_CASTEiJ_P0023694 Plekhg1 protein_coding protein_coding MGP_CASTEiJ_T0023695.1 MGP_CASTEiJ_G0016317.1 mouse_genomes_project 10 895390 911350 + Plekhg1 protein_coding retained_intron MGP_CASTEiJ_T0023696.1 MGP_CASTEiJ_G0016317.1 mouse_genomes_project 10 895394 959184 + MGP_CASTEiJ_P0023696 Plekhg1 protein_coding protein_coding MGP_CASTEiJ_T0023697.1 MGP_CASTEiJ_G0016317.1 mouse_genomes_project 10 949882 955426 + MGP_CASTEiJ_P0023697 Plekhg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024263.1 MGP_CASTEiJ_G0016488.1 mouse_genomes_project 10 37597635 37616487 + MGP_CASTEiJ_P0024263 Tube1 protein_coding protein_coding MGP_CASTEiJ_T0024264.1 MGP_CASTEiJ_G0016488.1 mouse_genomes_project 10 37597637 37615637 + MGP_CASTEiJ_P0024264 Tube1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025490.1 MGP_CASTEiJ_G0016813.1 mouse_genomes_project 10 80316594 80324658 - MGP_CASTEiJ_P0025490 Cbarp protein_coding protein_coding MGP_CASTEiJ_T0025491.1 MGP_CASTEiJ_G0016813.1 mouse_genomes_project 10 80316594 80324658 - MGP_CASTEiJ_P0025491 Cbarp protein_coding protein_coding MGP_CASTEiJ_T0025492.1 MGP_CASTEiJ_G0016813.1 mouse_genomes_project 10 80316694 80328444 - MGP_CASTEiJ_P0025492 Cbarp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025493.1 MGP_CASTEiJ_G0016813.1 mouse_genomes_project 10 80316694 80328444 - MGP_CASTEiJ_P0025493 Cbarp protein_coding protein_coding MGP_CASTEiJ_T0025494.1 MGP_CASTEiJ_G0016813.1 mouse_genomes_project 10 80318679 80321952 - Cbarp protein_coding retained_intron MGP_CASTEiJ_T0025495.1 MGP_CASTEiJ_G0016813.1 mouse_genomes_project 10 80320295 80328412 - MGP_CASTEiJ_P0025495 Cbarp protein_coding unknown_likely_coding MGP_CASTEiJ_T0025496.1 MGP_CASTEiJ_G0016813.1 mouse_genomes_project 10 80320344 80322859 - Cbarp protein_coding retained_intron MGP_CASTEiJ_T0025497.1 MGP_CASTEiJ_G0016813.1 mouse_genomes_project 10 80322388 80328442 - MGP_CASTEiJ_P0025497 Cbarp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025498.1 MGP_CASTEiJ_G0016813.1 mouse_genomes_project 10 80322428 80328257 - MGP_CASTEiJ_P0025498 Cbarp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025499.1 MGP_CASTEiJ_G0016813.1 mouse_genomes_project 10 80322786 80325180 - Cbarp protein_coding processed_transcript MGP_CASTEiJ_T0025500.1 MGP_CASTEiJ_G0016813.1 mouse_genomes_project 10 80323915 80325167 - Cbarp protein_coding processed_transcript MGP_CASTEiJ_T0025501.1 MGP_CASTEiJ_G0016813.1 mouse_genomes_project 10 80323933 80324623 - Cbarp protein_coding processed_transcript MGP_CASTEiJ_T0025502.1 MGP_CASTEiJ_G0016813.1 mouse_genomes_project 10 80323978 80324909 - Cbarp protein_coding retained_intron MGP_CASTEiJ_T0025503.1 MGP_CASTEiJ_G0016813.1 mouse_genomes_project 10 80324144 80324865 - Cbarp protein_coding retained_intron MGP_CASTEiJ_T0025504.1 MGP_CASTEiJ_G0016813.1 mouse_genomes_project 10 80324617 80327695 - Cbarp protein_coding processed_transcript MGP_CASTEiJ_T0025505.1 MGP_CASTEiJ_G0016813.1 mouse_genomes_project 10 80324617 80329951 - MGP_CASTEiJ_P0025505 Cbarp protein_coding protein_coding MGP_CASTEiJ_T0025245.1 MGP_CASTEiJ_G0016740.1 mouse_genomes_project 10 77921657 77922254 - MGP_CASTEiJ_P0025245 protein_coding protein_coding MGP_CASTEiJ_T0025728.1 MGP_CASTEiJ_G0016872.1 mouse_genomes_project 10 81495972 81499881 - MGP_CASTEiJ_P0025728 Nmrk2 protein_coding protein_coding MGP_CASTEiJ_T0101506.1 MGP_CASTEiJ_G0038406.1 mouse_genomes_project 10 87267106 87270344 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0025696.1 MGP_CASTEiJ_G0016864.1 mouse_genomes_project 10 81350993 81363477 + MGP_CASTEiJ_P0025696 Thop1 protein_coding protein_coding MGP_CASTEiJ_T0025697.1 MGP_CASTEiJ_G0016864.1 mouse_genomes_project 10 81351085 81355793 + Thop1 protein_coding retained_intron MGP_CASTEiJ_T0025698.1 MGP_CASTEiJ_G0016864.1 mouse_genomes_project 10 81351117 81359522 + Thop1 protein_coding processed_transcript MGP_CASTEiJ_T0025699.1 MGP_CASTEiJ_G0016864.1 mouse_genomes_project 10 81354230 81359675 + Thop1 protein_coding retained_intron MGP_CASTEiJ_T0025700.1 MGP_CASTEiJ_G0016864.1 mouse_genomes_project 10 81359787 81360999 + Thop1 protein_coding retained_intron MGP_CASTEiJ_T0026497.1 MGP_CASTEiJ_G0017076.1 mouse_genomes_project 10 119063494 119109822 + MGP_CASTEiJ_P0026497 Best3 protein_coding protein_coding MGP_CASTEiJ_T0026498.1 MGP_CASTEiJ_G0017076.1 mouse_genomes_project 10 119074692 119114036 + MGP_CASTEiJ_P0026498 Best3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025050.1 MGP_CASTEiJ_G0016683.1 mouse_genomes_project 10 75079248 75191209 + MGP_CASTEiJ_P0025050 Specc1l protein_coding protein_coding MGP_CASTEiJ_T0025051.1 MGP_CASTEiJ_G0016683.1 mouse_genomes_project 10 75098654 75191209 + MGP_CASTEiJ_P0025051 Specc1l protein_coding protein_coding MGP_CASTEiJ_T0026794.1 MGP_CASTEiJ_G0017170.1 mouse_genomes_project 10 131073609 131080534 + MGP_CASTEiJ_P0026794 Atp5b protein_coding protein_coding MGP_CASTEiJ_T0026795.1 MGP_CASTEiJ_G0017170.1 mouse_genomes_project 10 131073642 131074423 + Atp5b protein_coding processed_transcript MGP_CASTEiJ_T0026796.1 MGP_CASTEiJ_G0017170.1 mouse_genomes_project 10 131074769 131076271 + Atp5b protein_coding retained_intron MGP_CASTEiJ_T0026797.1 MGP_CASTEiJ_G0017170.1 mouse_genomes_project 10 131076065 131080307 + Atp5b protein_coding retained_intron MGP_CASTEiJ_T0026798.1 MGP_CASTEiJ_G0017170.1 mouse_genomes_project 10 131076551 131079270 + Atp5b protein_coding processed_transcript MGP_CASTEiJ_T0026799.1 MGP_CASTEiJ_G0017170.1 mouse_genomes_project 10 131077805 131079169 + Atp5b protein_coding retained_intron MGP_CASTEiJ_T0026800.1 MGP_CASTEiJ_G0017170.1 mouse_genomes_project 10 131078608 131079801 + Atp5b protein_coding retained_intron MGP_CASTEiJ_T0026801.1 MGP_CASTEiJ_G0017170.1 mouse_genomes_project 10 131078669 131080419 + Atp5b protein_coding processed_transcript MGP_CASTEiJ_T0026802.1 MGP_CASTEiJ_G0017170.1 mouse_genomes_project 10 131079158 131080418 + Atp5b protein_coding processed_transcript MGP_CASTEiJ_T0025337.1 MGP_CASTEiJ_G0016773.1 mouse_genomes_project 10 79599220 79623682 + MGP_CASTEiJ_P0025337 Vmn2r83 protein_coding protein_coding MGP_CASTEiJ_T0098809.1 MGP_CASTEiJ_G0035739.1 mouse_genomes_project 10 80826457 80828285 - Gm29093 sense_intronic sense_intronic MGP_CASTEiJ_T0010953.1 MGP_CASTEiJ_G0009141.1 mouse_genomes_project 10 92758986 92759095 - Gm27419 misc_RNA misc_RNA MGP_CASTEiJ_T0025701.1 MGP_CASTEiJ_G0016865.1 mouse_genomes_project 10 81366828 81384163 - MGP_CASTEiJ_P0025701 Creb3l3 protein_coding protein_coding MGP_CASTEiJ_T0025702.1 MGP_CASTEiJ_G0016865.1 mouse_genomes_project 10 81372394 81375060 - Creb3l3 protein_coding retained_intron MGP_CASTEiJ_T0025703.1 MGP_CASTEiJ_G0016865.1 mouse_genomes_project 10 81373058 81374342 - Creb3l3 protein_coding retained_intron MGP_CASTEiJ_T0025704.1 MGP_CASTEiJ_G0016865.1 mouse_genomes_project 10 81375115 81384043 - Creb3l3 protein_coding processed_transcript MGP_CASTEiJ_T0026416.1 MGP_CASTEiJ_G0017048.1 mouse_genomes_project 10 113073311 113099019 + MGP_CASTEiJ_P0026416 Nap1l1 protein_coding protein_coding MGP_CASTEiJ_T0026417.1 MGP_CASTEiJ_G0017048.1 mouse_genomes_project 10 113080727 113100271 + MGP_CASTEiJ_P0026417 Nap1l1 protein_coding protein_coding MGP_CASTEiJ_T0009368.1 MGP_CASTEiJ_G0007556.1 mouse_genomes_project 10 92692449 92692549 - Mir135a-2 miRNA miRNA MGP_CASTEiJ_T0000778.1 MGP_CASTEiJ_G0000719.1 mouse_genomes_project 10 38769023 38773223 - TEC TEC MGP_CASTEiJ_T0026981.1 MGP_CASTEiJ_G0017264.1 mouse_genomes_project 10 133382918 133387459 - MGP_CASTEiJ_P0026981 protein_coding protein_coding MGP_CASTEiJ_T0026982.1 MGP_CASTEiJ_G0017264.1 mouse_genomes_project 10 133382918 133384148 - MGP_CASTEiJ_P0026982 protein_coding protein_coding MGP_CASTEiJ_T0026673.1 MGP_CASTEiJ_G0017129.1 mouse_genomes_project 10 129924241 129938187 + MGP_CASTEiJ_P0026673 Agap2 protein_coding protein_coding MGP_CASTEiJ_T0012086.1 MGP_CASTEiJ_G0010249.1 mouse_genomes_project 10 75897764 75898038 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005929.1 MGP_CASTEiJ_G0004976.1 mouse_genomes_project 10 41494036 41496071 - Gm26860 lincRNA lincRNA MGP_CASTEiJ_T0025298.1 MGP_CASTEiJ_G0016752.1 mouse_genomes_project 10 78329693 78389134 - MGP_CASTEiJ_P0025298 Trappc10 protein_coding protein_coding MGP_CASTEiJ_T0024471.1 MGP_CASTEiJ_G0016549.1 mouse_genomes_project 10 50567039 50572108 - MGP_CASTEiJ_P0024471 Fam162b protein_coding protein_coding MGP_CASTEiJ_T0024442.1 MGP_CASTEiJ_G0016539.1 mouse_genomes_project 10 43118016 43222694 + MGP_CASTEiJ_P0024442 Atg5 protein_coding protein_coding MGP_CASTEiJ_T0024677.1 MGP_CASTEiJ_G0016608.1 mouse_genomes_project 10 60126368 60208235 - MGP_CASTEiJ_P0024677 Adamts14 protein_coding protein_coding MGP_CASTEiJ_T0024678.1 MGP_CASTEiJ_G0016608.1 mouse_genomes_project 10 60127710 60208039 - MGP_CASTEiJ_P0024678 Adamts14 protein_coding protein_coding MGP_CASTEiJ_T0024753.1 MGP_CASTEiJ_G0016631.1 mouse_genomes_project 10 61522731 61558464 - MGP_CASTEiJ_P0024753 Vps26a protein_coding protein_coding MGP_CASTEiJ_T0024754.1 MGP_CASTEiJ_G0016631.1 mouse_genomes_project 10 61522731 61558669 - MGP_CASTEiJ_P0024754 Vps26a protein_coding protein_coding MGP_CASTEiJ_T0024496.1 MGP_CASTEiJ_G0016561.1 mouse_genomes_project 10 52250432 52365418 - MGP_CASTEiJ_P0024496 Cep85l protein_coding protein_coding MGP_CASTEiJ_T0099200.1 MGP_CASTEiJ_G0036113.1 mouse_genomes_project 10 106271104 106271270 + Gm25587 snRNA snRNA MGP_CASTEiJ_T0026879.1 MGP_CASTEiJ_G0017198.1 mouse_genomes_project 10 131681670 131698599 - MGP_CASTEiJ_P0026879 Ikzf4 protein_coding protein_coding MGP_CASTEiJ_T0026880.1 MGP_CASTEiJ_G0017198.1 mouse_genomes_project 10 131683226 131698557 - MGP_CASTEiJ_P0026880 Ikzf4 protein_coding protein_coding MGP_CASTEiJ_T0026881.1 MGP_CASTEiJ_G0017198.1 mouse_genomes_project 10 131683287 131698575 - MGP_CASTEiJ_P0026881 Ikzf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026882.1 MGP_CASTEiJ_G0017198.1 mouse_genomes_project 10 131684537 131697383 - MGP_CASTEiJ_P0026882 Ikzf4 protein_coding protein_coding MGP_CASTEiJ_T0026883.1 MGP_CASTEiJ_G0017198.1 mouse_genomes_project 10 131692996 131698527 - MGP_CASTEiJ_P0026883 Ikzf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026884.1 MGP_CASTEiJ_G0017198.1 mouse_genomes_project 10 131693918 131698521 - MGP_CASTEiJ_P0026884 Ikzf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026885.1 MGP_CASTEiJ_G0017198.1 mouse_genomes_project 10 131693944 131698538 - MGP_CASTEiJ_P0026885 Ikzf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026886.1 MGP_CASTEiJ_G0017198.1 mouse_genomes_project 10 131697172 131698557 - Ikzf4 protein_coding processed_transcript MGP_CASTEiJ_T0025633.1 MGP_CASTEiJ_G0016842.1 mouse_genomes_project 10 80883061 80899455 - MGP_CASTEiJ_P0025633 Btbd2 protein_coding protein_coding MGP_CASTEiJ_T0025634.1 MGP_CASTEiJ_G0016842.1 mouse_genomes_project 10 80883061 80898886 - MGP_CASTEiJ_P0025634 Btbd2 protein_coding protein_coding MGP_CASTEiJ_T0025635.1 MGP_CASTEiJ_G0016842.1 mouse_genomes_project 10 80883067 80885068 - Btbd2 protein_coding retained_intron MGP_CASTEiJ_T0025636.1 MGP_CASTEiJ_G0016842.1 mouse_genomes_project 10 80884575 80888084 - Btbd2 protein_coding retained_intron MGP_CASTEiJ_T0025637.1 MGP_CASTEiJ_G0016842.1 mouse_genomes_project 10 80885073 80898530 - MGP_CASTEiJ_P0025637 Btbd2 protein_coding protein_coding MGP_CASTEiJ_T0024802.1 MGP_CASTEiJ_G0016642.1 mouse_genomes_project 10 62131921 62142686 - MGP_CASTEiJ_P0024802 Hnrnph3 protein_coding protein_coding MGP_CASTEiJ_T0024803.1 MGP_CASTEiJ_G0016642.1 mouse_genomes_project 10 62131921 62142686 - MGP_CASTEiJ_P0024803 Hnrnph3 protein_coding protein_coding MGP_CASTEiJ_T0024804.1 MGP_CASTEiJ_G0016642.1 mouse_genomes_project 10 62132685 62143009 - MGP_CASTEiJ_P0024804 Hnrnph3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024805.1 MGP_CASTEiJ_G0016642.1 mouse_genomes_project 10 62132688 62133426 - Hnrnph3 protein_coding retained_intron MGP_CASTEiJ_T0024806.1 MGP_CASTEiJ_G0016642.1 mouse_genomes_project 10 62133697 62135361 - Hnrnph3 protein_coding retained_intron MGP_CASTEiJ_T0024807.1 MGP_CASTEiJ_G0016642.1 mouse_genomes_project 10 62135083 62142639 - MGP_CASTEiJ_P0024807 Hnrnph3 protein_coding protein_coding MGP_CASTEiJ_T0025589.1 MGP_CASTEiJ_G0016831.1 mouse_genomes_project 10 80607990 80614871 - MGP_CASTEiJ_P0025589 Mbd3 protein_coding protein_coding MGP_CASTEiJ_T0025590.1 MGP_CASTEiJ_G0016831.1 mouse_genomes_project 10 80607991 80615193 - MGP_CASTEiJ_P0025590 Mbd3 protein_coding protein_coding MGP_CASTEiJ_T0025591.1 MGP_CASTEiJ_G0016831.1 mouse_genomes_project 10 80608291 80615065 - MGP_CASTEiJ_P0025591 Mbd3 protein_coding protein_coding MGP_CASTEiJ_T0025592.1 MGP_CASTEiJ_G0016831.1 mouse_genomes_project 10 80608434 80611381 - MGP_CASTEiJ_P0025592 Mbd3 protein_coding protein_coding MGP_CASTEiJ_T0025593.1 MGP_CASTEiJ_G0016831.1 mouse_genomes_project 10 80609343 80610988 - Mbd3 protein_coding processed_transcript MGP_CASTEiJ_T0026304.1 MGP_CASTEiJ_G0017012.1 mouse_genomes_project 10 100140888 100256018 + MGP_CASTEiJ_P0026304 Poc1b protein_coding protein_coding MGP_CASTEiJ_T0026305.1 MGP_CASTEiJ_G0017012.1 mouse_genomes_project 10 100140934 100255082 + MGP_CASTEiJ_P0026305 Poc1b protein_coding protein_coding MGP_CASTEiJ_T0026306.1 MGP_CASTEiJ_G0017012.1 mouse_genomes_project 10 100140955 100256101 + MGP_CASTEiJ_P0026306 Poc1b protein_coding protein_coding MGP_CASTEiJ_T0026309.1 MGP_CASTEiJ_G0017012.1 mouse_genomes_project 10 100165176 100249579 + MGP_CASTEiJ_P0026309 Poc1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026310.1 MGP_CASTEiJ_G0017012.1 mouse_genomes_project 10 100221648 100255058 + Poc1b protein_coding processed_transcript MGP_CASTEiJ_T0026311.1 MGP_CASTEiJ_G0017012.1 mouse_genomes_project 10 100249681 100254880 + Poc1b protein_coding processed_transcript MGP_CASTEiJ_T0025627.1 MGP_CASTEiJ_G0016840.1 mouse_genomes_project 10 80841055 80855237 + MGP_CASTEiJ_P0025627 Scamp4 protein_coding protein_coding MGP_CASTEiJ_T0025628.1 MGP_CASTEiJ_G0016840.1 mouse_genomes_project 10 80841426 80854416 + MGP_CASTEiJ_P0025628 Scamp4 protein_coding protein_coding MGP_CASTEiJ_T0098450.1 MGP_CASTEiJ_G0035381.1 mouse_genomes_project 10 78677567 78677683 + Gm25164 rRNA rRNA MGP_CASTEiJ_T0025136.1 MGP_CASTEiJ_G0016710.1 mouse_genomes_project 10 76220290 76227599 + MGP_CASTEiJ_P0025136 S100b protein_coding protein_coding MGP_CASTEiJ_T0026007.1 MGP_CASTEiJ_G0016940.1 mouse_genomes_project 10 86354552 86806846 - MGP_CASTEiJ_P0026007 Syn3 protein_coding protein_coding MGP_CASTEiJ_T0026008.1 MGP_CASTEiJ_G0016940.1 mouse_genomes_project 10 86356854 86366281 - Syn3 protein_coding processed_transcript MGP_CASTEiJ_T0026009.1 MGP_CASTEiJ_G0016940.1 mouse_genomes_project 10 86369894 86799949 - Syn3 protein_coding retained_intron MGP_CASTEiJ_T0026010.1 MGP_CASTEiJ_G0016940.1 mouse_genomes_project 10 86598193 86806872 - MGP_CASTEiJ_P0026010 Syn3 protein_coding protein_coding MGP_CASTEiJ_T0026015.1 MGP_CASTEiJ_G0016940.1 mouse_genomes_project 10 86654251 86799949 - Syn3 protein_coding retained_intron MGP_CASTEiJ_T0026016.1 MGP_CASTEiJ_G0016940.1 mouse_genomes_project 10 86657871 86806886 - Syn3 protein_coding retained_intron MGP_CASTEiJ_T0025793.1 MGP_CASTEiJ_G0016887.1 mouse_genomes_project 10 81695631 81699578 + MGP_CASTEiJ_P0025793 Dohh protein_coding protein_coding MGP_CASTEiJ_T0025794.1 MGP_CASTEiJ_G0016887.1 mouse_genomes_project 10 81695662 81698677 + MGP_CASTEiJ_P0025794 Dohh protein_coding protein_coding MGP_CASTEiJ_T0025795.1 MGP_CASTEiJ_G0016887.1 mouse_genomes_project 10 81695669 81702795 + MGP_CASTEiJ_P0025795 Dohh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025796.1 MGP_CASTEiJ_G0016887.1 mouse_genomes_project 10 81695670 81697333 + Dohh protein_coding retained_intron MGP_CASTEiJ_T0025797.1 MGP_CASTEiJ_G0016887.1 mouse_genomes_project 10 81696123 81697226 + MGP_CASTEiJ_P0025797 Dohh protein_coding protein_coding MGP_CASTEiJ_T0025798.1 MGP_CASTEiJ_G0016887.1 mouse_genomes_project 10 81696852 81698907 + MGP_CASTEiJ_P0025798 Dohh protein_coding protein_coding MGP_CASTEiJ_T0025799.1 MGP_CASTEiJ_G0016887.1 mouse_genomes_project 10 81698542 81702093 + MGP_CASTEiJ_P0025799 Dohh protein_coding protein_coding MGP_CASTEiJ_T0025800.1 MGP_CASTEiJ_G0016887.1 mouse_genomes_project 10 81700239 81702502 + Dohh protein_coding processed_transcript MGP_CASTEiJ_T0025801.1 MGP_CASTEiJ_G0016887.1 mouse_genomes_project 10 81701563 81702370 + Dohh protein_coding retained_intron MGP_CASTEiJ_T0012068.1 MGP_CASTEiJ_G0010231.1 mouse_genomes_project 10 56641936 56642539 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0025149.1 MGP_CASTEiJ_G0016714.1 mouse_genomes_project 10 76443091 76454529 - MGP_CASTEiJ_P0025149 Ybey protein_coding protein_coding MGP_CASTEiJ_T0024095.1 MGP_CASTEiJ_G0016430.1 mouse_genomes_project 10 22017960 22099148 + MGP_CASTEiJ_P0024095 Moxd1 protein_coding protein_coding MGP_CASTEiJ_T0024096.1 MGP_CASTEiJ_G0016430.1 mouse_genomes_project 10 22017988 22025585 + Moxd1 protein_coding processed_transcript MGP_CASTEiJ_T0024097.1 MGP_CASTEiJ_G0016430.1 mouse_genomes_project 10 22018128 22098240 + MGP_CASTEiJ_P0024097 Moxd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025234.1 MGP_CASTEiJ_G0016732.1 mouse_genomes_project 10 77694860 77720987 + MGP_CASTEiJ_P0025234 Ube2g2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025235.1 MGP_CASTEiJ_G0016732.1 mouse_genomes_project 10 77694911 77722426 + MGP_CASTEiJ_P0025235 Ube2g2 protein_coding protein_coding MGP_CASTEiJ_T0025236.1 MGP_CASTEiJ_G0016732.1 mouse_genomes_project 10 77694915 77715233 + MGP_CASTEiJ_P0025236 Ube2g2 protein_coding protein_coding MGP_CASTEiJ_T0025237.1 MGP_CASTEiJ_G0016732.1 mouse_genomes_project 10 77714918 77720936 + Ube2g2 protein_coding retained_intron MGP_CASTEiJ_T0002961.1 MGP_CASTEiJ_G0002774.1 mouse_genomes_project 10 81783204 81785010 + Gm16105 antisense antisense MGP_CASTEiJ_T0023993.1 MGP_CASTEiJ_G0016388.1 mouse_genomes_project 10 17133285 17152410 + MGP_CASTEiJ_P0023993 Ifngr1 protein_coding protein_coding MGP_CASTEiJ_T0023994.1 MGP_CASTEiJ_G0016388.1 mouse_genomes_project 10 17133294 17139190 + Ifngr1 protein_coding retained_intron MGP_CASTEiJ_T0023995.1 MGP_CASTEiJ_G0016388.1 mouse_genomes_project 10 17133367 17145953 + MGP_CASTEiJ_P0023995 Ifngr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023996.1 MGP_CASTEiJ_G0016388.1 mouse_genomes_project 10 17133384 17143650 + MGP_CASTEiJ_P0023996 Ifngr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023997.1 MGP_CASTEiJ_G0016388.1 mouse_genomes_project 10 17133393 17145973 + MGP_CASTEiJ_P0023997 Ifngr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023998.1 MGP_CASTEiJ_G0016388.1 mouse_genomes_project 10 17148095 17151440 + Ifngr1 protein_coding retained_intron MGP_CASTEiJ_T0026324.1 MGP_CASTEiJ_G0017020.1 mouse_genomes_project 10 101535203 101623404 + MGP_CASTEiJ_P0026324 Cep290 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026325.1 MGP_CASTEiJ_G0017020.1 mouse_genomes_project 10 101535226 101622184 + MGP_CASTEiJ_P0026325 Cep290 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026326.1 MGP_CASTEiJ_G0017020.1 mouse_genomes_project 10 101535848 101623674 + MGP_CASTEiJ_P0026326 Cep290 protein_coding protein_coding MGP_CASTEiJ_T0025068.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75455158 75471846 + MGP_CASTEiJ_P0025068 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025069.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75455209 75471893 + MGP_CASTEiJ_P0025069 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025070.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75457713 75469891 + MGP_CASTEiJ_P0025070 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025071.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75457720 75471846 + MGP_CASTEiJ_P0025071 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025072.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75461540 75474458 + MGP_CASTEiJ_P0025072 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025073.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75461545 75474906 + MGP_CASTEiJ_P0025073 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025074.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75463898 75474823 + MGP_CASTEiJ_P0025074 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025075.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75463905 75471893 + MGP_CASTEiJ_P0025075 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025076.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75463920 75481873 + MGP_CASTEiJ_P0025076 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025077.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75463921 75471645 + MGP_CASTEiJ_P0025077 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025078.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75463926 75471893 + MGP_CASTEiJ_P0025078 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025079.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75463938 75471560 + MGP_CASTEiJ_P0025079 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025080.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75467075 75474461 + MGP_CASTEiJ_P0025080 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025081.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75467080 75474901 + MGP_CASTEiJ_P0025081 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025082.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75467119 75476973 + Ggt1 protein_coding processed_transcript MGP_CASTEiJ_T0025083.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75469012 75481855 + MGP_CASTEiJ_P0025083 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025084.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75469450 75474924 + MGP_CASTEiJ_P0025084 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025085.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75471666 75480399 + MGP_CASTEiJ_P0025085 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025086.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75476909 75481831 + MGP_CASTEiJ_P0025086 Ggt1 protein_coding protein_coding MGP_CASTEiJ_T0025087.1 MGP_CASTEiJ_G0016690.1 mouse_genomes_project 10 75480538 75481864 + Ggt1 protein_coding retained_intron MGP_CASTEiJ_T0005928.1 MGP_CASTEiJ_G0004975.1 mouse_genomes_project 10 40243856 40246588 - Gm29095 lincRNA lincRNA MGP_CASTEiJ_T0009351.1 MGP_CASTEiJ_G0007539.1 mouse_genomes_project 10 78600063 78600127 - Mir6908 miRNA miRNA MGP_CASTEiJ_T0025992.1 MGP_CASTEiJ_G0016935.1 mouse_genomes_project 10 86170997 86198901 - MGP_CASTEiJ_P0025992 Prdm4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025993.1 MGP_CASTEiJ_G0016935.1 mouse_genomes_project 10 86170997 86199002 - MGP_CASTEiJ_P0025993 Prdm4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025994.1 MGP_CASTEiJ_G0016935.1 mouse_genomes_project 10 86171006 86198907 - MGP_CASTEiJ_P0025994 Prdm4 protein_coding protein_coding MGP_CASTEiJ_T0026965.1 MGP_CASTEiJ_G0017251.1 mouse_genomes_project 10 132930632 132931849 - MGP_CASTEiJ_P0026965 Olfr811 protein_coding protein_coding MGP_CASTEiJ_T0026630.1 MGP_CASTEiJ_G0017114.1 mouse_genomes_project 10 125520746 125605479 - MGP_CASTEiJ_P0026630 Mon2 protein_coding protein_coding MGP_CASTEiJ_T0026631.1 MGP_CASTEiJ_G0017114.1 mouse_genomes_project 10 125520746 125605479 - MGP_CASTEiJ_P0026631 Mon2 protein_coding protein_coding MGP_CASTEiJ_T0026632.1 MGP_CASTEiJ_G0017114.1 mouse_genomes_project 10 125520746 125605479 - MGP_CASTEiJ_P0026632 Mon2 protein_coding protein_coding MGP_CASTEiJ_T0012078.1 MGP_CASTEiJ_G0010241.1 mouse_genomes_project 10 62046156 62046782 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0026499.1 MGP_CASTEiJ_G0017077.1 mouse_genomes_project 10 119128148 119129570 + MGP_CASTEiJ_P0026499 Lrrc10 protein_coding protein_coding MGP_CASTEiJ_T0026639.1 MGP_CASTEiJ_G0017119.1 mouse_genomes_project 10 129688345 129715583 - MGP_CASTEiJ_P0026639 Xrcc6bp1 protein_coding protein_coding MGP_CASTEiJ_T0026640.1 MGP_CASTEiJ_G0017119.1 mouse_genomes_project 10 129703112 129715583 - MGP_CASTEiJ_P0026640 Xrcc6bp1 protein_coding protein_coding MGP_CASTEiJ_T0025094.1 MGP_CASTEiJ_G0016693.1 mouse_genomes_project 10 75546766 75667120 - MGP_CASTEiJ_P0025094 Cabin1 protein_coding protein_coding MGP_CASTEiJ_T0026961.1 MGP_CASTEiJ_G0017248.1 mouse_genomes_project 10 132860136 132861133 - MGP_CASTEiJ_P0026961 Olfr807 protein_coding protein_coding MGP_CASTEiJ_T0023744.1 MGP_CASTEiJ_G0016331.1 mouse_genomes_project 10 2923024 3033899 - MGP_CASTEiJ_P0023744 Rgs17 protein_coding protein_coding MGP_CASTEiJ_T0023745.1 MGP_CASTEiJ_G0016331.1 mouse_genomes_project 10 2923024 3033885 - MGP_CASTEiJ_P0023745 Rgs17 protein_coding protein_coding MGP_CASTEiJ_T0023746.1 MGP_CASTEiJ_G0016331.1 mouse_genomes_project 10 2929537 3033865 - MGP_CASTEiJ_P0023746 Rgs17 protein_coding protein_coding MGP_CASTEiJ_T0023747.1 MGP_CASTEiJ_G0016331.1 mouse_genomes_project 10 2933574 3033865 - MGP_CASTEiJ_P0023747 Rgs17 protein_coding protein_coding MGP_CASTEiJ_T0026299.1 MGP_CASTEiJ_G0017008.1 mouse_genomes_project 10 98672532 98672847 - MGP_CASTEiJ_P0026299 protein_coding protein_coding MGP_CASTEiJ_T0026041.1 MGP_CASTEiJ_G0016949.1 mouse_genomes_project 10 87886013 87955663 + MGP_CASTEiJ_P0026041 Pah protein_coding protein_coding MGP_CASTEiJ_T0026042.1 MGP_CASTEiJ_G0016949.1 mouse_genomes_project 10 87886148 87955561 + MGP_CASTEiJ_P0026042 Pah protein_coding protein_coding MGP_CASTEiJ_T0026043.1 MGP_CASTEiJ_G0016949.1 mouse_genomes_project 10 87886245 87955382 + MGP_CASTEiJ_P0026043 Pah protein_coding protein_coding MGP_CASTEiJ_T0026044.1 MGP_CASTEiJ_G0016949.1 mouse_genomes_project 10 87911640 87938882 + MGP_CASTEiJ_P0026044 Pah protein_coding protein_coding MGP_CASTEiJ_T0009386.1 MGP_CASTEiJ_G0007574.1 mouse_genomes_project 10 125179282 125179383 + Mir8104 miRNA miRNA MGP_CASTEiJ_T0023824.1 MGP_CASTEiJ_G0016344.1 mouse_genomes_project 10 4955713 5008438 + MGP_CASTEiJ_P0023824 Zc3h12d protein_coding protein_coding MGP_CASTEiJ_T0024017.1 MGP_CASTEiJ_G0016397.1 mouse_genomes_project 10 17866361 17897858 + MGP_CASTEiJ_P0024017 Bclaf1 protein_coding protein_coding MGP_CASTEiJ_T0024018.1 MGP_CASTEiJ_G0016397.1 mouse_genomes_project 10 17866364 17895615 + MGP_CASTEiJ_P0024018 Bclaf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024019.1 MGP_CASTEiJ_G0016397.1 mouse_genomes_project 10 17866376 17897856 + MGP_CASTEiJ_P0024019 Bclaf1 protein_coding protein_coding MGP_CASTEiJ_T0024020.1 MGP_CASTEiJ_G0016397.1 mouse_genomes_project 10 17866420 17876494 + Bclaf1 protein_coding retained_intron MGP_CASTEiJ_T0024021.1 MGP_CASTEiJ_G0016397.1 mouse_genomes_project 10 17866421 17895611 + MGP_CASTEiJ_P0024021 Bclaf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024022.1 MGP_CASTEiJ_G0016397.1 mouse_genomes_project 10 17866429 17895612 + MGP_CASTEiJ_P0024022 Bclaf1 protein_coding protein_coding MGP_CASTEiJ_T0024023.1 MGP_CASTEiJ_G0016397.1 mouse_genomes_project 10 17879083 17899969 + MGP_CASTEiJ_P0024023 Bclaf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024024.1 MGP_CASTEiJ_G0016397.1 mouse_genomes_project 10 17881404 17887619 + MGP_CASTEiJ_P0024024 Bclaf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024025.1 MGP_CASTEiJ_G0016397.1 mouse_genomes_project 10 17884406 17889251 + Bclaf1 protein_coding retained_intron MGP_CASTEiJ_T0024026.1 MGP_CASTEiJ_G0016397.1 mouse_genomes_project 10 17888614 17895555 + Bclaf1 protein_coding retained_intron MGP_CASTEiJ_T0100355.1 MGP_CASTEiJ_G0037268.1 mouse_genomes_project 10 21524646 21524775 - Snora33 snoRNA snoRNA MGP_CASTEiJ_T0026438.1 MGP_CASTEiJ_G0017057.1 mouse_genomes_project 10 114652260 114654950 + MGP_CASTEiJ_P0026438 Gm26596 protein_coding protein_coding MGP_CASTEiJ_T0026957.1 MGP_CASTEiJ_G0017245.1 mouse_genomes_project 10 132782861 132783788 - MGP_CASTEiJ_P0026957 Olfr803 protein_coding protein_coding MGP_CASTEiJ_T0025963.1 MGP_CASTEiJ_G0016924.1 mouse_genomes_project 10 84779014 84818823 + MGP_CASTEiJ_P0025963 Tcp11l2 protein_coding protein_coding MGP_CASTEiJ_T0025964.1 MGP_CASTEiJ_G0016924.1 mouse_genomes_project 10 84779285 84799476 + Tcp11l2 protein_coding retained_intron MGP_CASTEiJ_T0025965.1 MGP_CASTEiJ_G0016924.1 mouse_genomes_project 10 84798828 84809188 + Tcp11l2 protein_coding retained_intron MGP_CASTEiJ_T0025527.1 MGP_CASTEiJ_G0016819.1 mouse_genomes_project 10 80421280 80438733 + MGP_CASTEiJ_P0025527 Mum1 protein_coding protein_coding MGP_CASTEiJ_T0025528.1 MGP_CASTEiJ_G0016819.1 mouse_genomes_project 10 80421500 80438730 + Mum1 protein_coding retained_intron MGP_CASTEiJ_T0025529.1 MGP_CASTEiJ_G0016819.1 mouse_genomes_project 10 80421517 80427537 + MGP_CASTEiJ_P0025529 Mum1 protein_coding protein_coding MGP_CASTEiJ_T0025530.1 MGP_CASTEiJ_G0016819.1 mouse_genomes_project 10 80421525 80438728 + Mum1 protein_coding retained_intron MGP_CASTEiJ_T0025531.1 MGP_CASTEiJ_G0016819.1 mouse_genomes_project 10 80421596 80424019 + Mum1 protein_coding retained_intron MGP_CASTEiJ_T0025532.1 MGP_CASTEiJ_G0016819.1 mouse_genomes_project 10 80429046 80438733 + Mum1 protein_coding retained_intron MGP_CASTEiJ_T0025533.1 MGP_CASTEiJ_G0016819.1 mouse_genomes_project 10 80429047 80431968 + Mum1 protein_coding retained_intron MGP_CASTEiJ_T0025534.1 MGP_CASTEiJ_G0016819.1 mouse_genomes_project 10 80429112 80438731 + Mum1 protein_coding retained_intron MGP_CASTEiJ_T0025535.1 MGP_CASTEiJ_G0016819.1 mouse_genomes_project 10 80430964 80435228 + Mum1 protein_coding retained_intron MGP_CASTEiJ_T0025536.1 MGP_CASTEiJ_G0016819.1 mouse_genomes_project 10 80436373 80438730 + Mum1 protein_coding retained_intron MGP_CASTEiJ_T0025537.1 MGP_CASTEiJ_G0016819.1 mouse_genomes_project 10 80437440 80438730 + Mum1 protein_coding processed_transcript MGP_CASTEiJ_T0024304.1 MGP_CASTEiJ_G0016501.1 mouse_genomes_project 10 38842893 38858993 - MGP_CASTEiJ_P0024304 Amd1 protein_coding protein_coding MGP_CASTEiJ_T0026872.1 MGP_CASTEiJ_G0017194.1 mouse_genomes_project 10 131582568 131583204 - protein_coding retained_intron MGP_CASTEiJ_T0024049.1 MGP_CASTEiJ_G0016406.1 mouse_genomes_project 10 19539172 19665127 + MGP_CASTEiJ_P0024049 Sgk1 protein_coding protein_coding MGP_CASTEiJ_T0024050.1 MGP_CASTEiJ_G0016406.1 mouse_genomes_project 10 19539357 19556019 + Sgk1 protein_coding processed_transcript MGP_CASTEiJ_T0024051.1 MGP_CASTEiJ_G0016406.1 mouse_genomes_project 10 19586737 19654728 + MGP_CASTEiJ_P0024051 Sgk1 protein_coding protein_coding MGP_CASTEiJ_T0024052.1 MGP_CASTEiJ_G0016406.1 mouse_genomes_project 10 19641834 19661116 + MGP_CASTEiJ_P0024052 Sgk1 protein_coding protein_coding MGP_CASTEiJ_T0024053.1 MGP_CASTEiJ_G0016406.1 mouse_genomes_project 10 19656549 19665132 + MGP_CASTEiJ_P0024053 Sgk1 protein_coding protein_coding MGP_CASTEiJ_T0024054.1 MGP_CASTEiJ_G0016406.1 mouse_genomes_project 10 19656549 19661097 + MGP_CASTEiJ_P0024054 Sgk1 protein_coding protein_coding MGP_CASTEiJ_T0024055.1 MGP_CASTEiJ_G0016406.1 mouse_genomes_project 10 19659119 19665125 + MGP_CASTEiJ_P0024055 Sgk1 protein_coding protein_coding MGP_CASTEiJ_T0024056.1 MGP_CASTEiJ_G0016406.1 mouse_genomes_project 10 19659912 19660824 + Sgk1 protein_coding retained_intron MGP_CASTEiJ_T0024057.1 MGP_CASTEiJ_G0016406.1 mouse_genomes_project 10 19659914 19665136 + MGP_CASTEiJ_P0024057 Sgk1 protein_coding protein_coding MGP_CASTEiJ_T0024058.1 MGP_CASTEiJ_G0016406.1 mouse_genomes_project 10 19659940 19661564 + Sgk1 protein_coding retained_intron MGP_CASTEiJ_T0024059.1 MGP_CASTEiJ_G0016406.1 mouse_genomes_project 10 19660139 19662663 + MGP_CASTEiJ_P0024059 Sgk1 protein_coding protein_coding MGP_CASTEiJ_T0024060.1 MGP_CASTEiJ_G0016406.1 mouse_genomes_project 10 19661813 19663469 + Sgk1 protein_coding retained_intron MGP_CASTEiJ_T0025168.1 MGP_CASTEiJ_G0016720.1 mouse_genomes_project 10 76712846 76734363 - MGP_CASTEiJ_P0025168 Col6a1 protein_coding protein_coding MGP_CASTEiJ_T0025169.1 MGP_CASTEiJ_G0016720.1 mouse_genomes_project 10 76719069 76723266 - Col6a1 protein_coding retained_intron MGP_CASTEiJ_T0012075.1 MGP_CASTEiJ_G0010238.1 mouse_genomes_project 10 60252872 60253319 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0023698.1 MGP_CASTEiJ_G0016318.1 mouse_genomes_project 10 966130 1175313 + MGP_CASTEiJ_P0023698 Mthfd1l protein_coding protein_coding MGP_CASTEiJ_T0023699.1 MGP_CASTEiJ_G0016318.1 mouse_genomes_project 10 966143 1186169 + MGP_CASTEiJ_P0023699 Mthfd1l protein_coding protein_coding MGP_CASTEiJ_T0023700.1 MGP_CASTEiJ_G0016318.1 mouse_genomes_project 10 966156 1175313 + MGP_CASTEiJ_P0023700 Mthfd1l protein_coding protein_coding MGP_CASTEiJ_T0023701.1 MGP_CASTEiJ_G0016318.1 mouse_genomes_project 10 1036263 1054170 + Mthfd1l protein_coding processed_transcript MGP_CASTEiJ_T0016370.1 MGP_CASTEiJ_G0014447.1 mouse_genomes_project 10 35580123 35584068 + 5930403N24Rik processed_transcript retained_intron MGP_CASTEiJ_T0016371.1 MGP_CASTEiJ_G0014447.1 mouse_genomes_project 10 35580277 35582385 + 5930403N24Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016372.1 MGP_CASTEiJ_G0014447.1 mouse_genomes_project 10 35580633 35593667 + 5930403N24Rik processed_transcript lincRNA MGP_CASTEiJ_T0099179.1 MGP_CASTEiJ_G0036092.1 mouse_genomes_project 10 62003297 62003403 - Gm26479 snRNA snRNA MGP_CASTEiJ_T0025943.1 MGP_CASTEiJ_G0016920.1 mouse_genomes_project 10 83777507 83840576 - MGP_CASTEiJ_P0025943 Appl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025944.1 MGP_CASTEiJ_G0016920.1 mouse_genomes_project 10 83785706 83840548 - MGP_CASTEiJ_P0025944 Appl2 protein_coding protein_coding MGP_CASTEiJ_T0025945.1 MGP_CASTEiJ_G0016920.1 mouse_genomes_project 10 83786070 83788806 - MGP_CASTEiJ_P0025945 Appl2 protein_coding protein_coding MGP_CASTEiJ_T0025946.1 MGP_CASTEiJ_G0016920.1 mouse_genomes_project 10 83786421 83796182 - MGP_CASTEiJ_P0025946 Appl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025947.1 MGP_CASTEiJ_G0016920.1 mouse_genomes_project 10 83787578 83789044 - Appl2 protein_coding retained_intron MGP_CASTEiJ_T0025948.1 MGP_CASTEiJ_G0016920.1 mouse_genomes_project 10 83788442 83799021 - Appl2 protein_coding retained_intron MGP_CASTEiJ_T0025949.1 MGP_CASTEiJ_G0016920.1 mouse_genomes_project 10 83788546 83798425 - Appl2 protein_coding retained_intron MGP_CASTEiJ_T0025950.1 MGP_CASTEiJ_G0016920.1 mouse_genomes_project 10 83793141 83840480 - Appl2 protein_coding retained_intron MGP_CASTEiJ_T0025951.1 MGP_CASTEiJ_G0016920.1 mouse_genomes_project 10 83793261 83798868 - Appl2 protein_coding retained_intron MGP_CASTEiJ_T0025952.1 MGP_CASTEiJ_G0016920.1 mouse_genomes_project 10 83795791 83798272 - Appl2 protein_coding retained_intron MGP_CASTEiJ_T0025953.1 MGP_CASTEiJ_G0016920.1 mouse_genomes_project 10 83801400 83817345 - Appl2 protein_coding processed_transcript MGP_CASTEiJ_T0025954.1 MGP_CASTEiJ_G0016920.1 mouse_genomes_project 10 83804562 83840475 - MGP_CASTEiJ_P0025954 Appl2 protein_coding protein_coding MGP_CASTEiJ_T0025955.1 MGP_CASTEiJ_G0016920.1 mouse_genomes_project 10 83807868 83840413 - MGP_CASTEiJ_P0025955 Appl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025956.1 MGP_CASTEiJ_G0016920.1 mouse_genomes_project 10 83807982 83828378 - Appl2 protein_coding processed_transcript MGP_CASTEiJ_T0025957.1 MGP_CASTEiJ_G0016920.1 mouse_genomes_project 10 83811812 83840485 - MGP_CASTEiJ_P0025957 Appl2 protein_coding protein_coding MGP_CASTEiJ_T0099154.1 MGP_CASTEiJ_G0036067.1 mouse_genomes_project 10 5764231 5764337 + Gm24374 snRNA snRNA MGP_CASTEiJ_T0099189.1 MGP_CASTEiJ_G0036102.1 mouse_genomes_project 10 85024043 85024140 - Gm24226 snRNA snRNA MGP_CASTEiJ_T0098810.1 MGP_CASTEiJ_G0035740.1 mouse_genomes_project 10 94452359 94453073 + sense_intronic sense_intronic MGP_CASTEiJ_T0024489.1 MGP_CASTEiJ_G0016557.1 mouse_genomes_project 10 51331921 51332008 + MGP_CASTEiJ_P0024489 Gm26741 protein_coding protein_coding MGP_CASTEiJ_T0026380.1 MGP_CASTEiJ_G0017037.1 mouse_genomes_project 10 108874346 109080816 - MGP_CASTEiJ_P0026380 Ptprq protein_coding protein_coding MGP_CASTEiJ_T0000787.1 MGP_CASTEiJ_G0000727.1 mouse_genomes_project 10 99497587 99497951 - TEC TEC MGP_CASTEiJ_T0002960.1 MGP_CASTEiJ_G0002773.1 mouse_genomes_project 10 81723775 81725780 + Gm16104 antisense antisense MGP_CASTEiJ_T0005936.1 MGP_CASTEiJ_G0004983.1 mouse_genomes_project 10 62510115 62524188 + Gm16145 lincRNA lincRNA MGP_CASTEiJ_T0024824.1 MGP_CASTEiJ_G0016648.1 mouse_genomes_project 10 62547657 62570073 + Dnajc12 protein_coding retained_intron MGP_CASTEiJ_T0024825.1 MGP_CASTEiJ_G0016648.1 mouse_genomes_project 10 62547784 62569529 + MGP_CASTEiJ_P0024825 Dnajc12 protein_coding protein_coding MGP_CASTEiJ_T0026979.1 MGP_CASTEiJ_G0017262.1 mouse_genomes_project 10 133264832 133265774 + MGP_CASTEiJ_P0026979 Olfr822 protein_coding protein_coding MGP_CASTEiJ_T0024692.1 MGP_CASTEiJ_G0016619.1 mouse_genomes_project 10 60711184 60735131 + MGP_CASTEiJ_P0024692 Aifm2 protein_coding protein_coding MGP_CASTEiJ_T0024693.1 MGP_CASTEiJ_G0016619.1 mouse_genomes_project 10 60711208 60723380 + Aifm2 protein_coding retained_intron MGP_CASTEiJ_T0024694.1 MGP_CASTEiJ_G0016619.1 mouse_genomes_project 10 60711232 60735742 + MGP_CASTEiJ_P0024694 Aifm2 protein_coding protein_coding MGP_CASTEiJ_T0024695.1 MGP_CASTEiJ_G0016619.1 mouse_genomes_project 10 60711244 60735125 + MGP_CASTEiJ_P0024695 Aifm2 protein_coding protein_coding MGP_CASTEiJ_T0024696.1 MGP_CASTEiJ_G0016619.1 mouse_genomes_project 10 60711253 60712159 + Aifm2 protein_coding processed_transcript MGP_CASTEiJ_T0024697.1 MGP_CASTEiJ_G0016619.1 mouse_genomes_project 10 60716207 60735131 + MGP_CASTEiJ_P0024697 Aifm2 protein_coding protein_coding MGP_CASTEiJ_T0024698.1 MGP_CASTEiJ_G0016619.1 mouse_genomes_project 10 60723606 60731067 + Aifm2 protein_coding retained_intron MGP_CASTEiJ_T0025242.1 MGP_CASTEiJ_G0016737.1 mouse_genomes_project 10 77805553 77806236 + MGP_CASTEiJ_P0025242 Krtap12-1 protein_coding protein_coding MGP_CASTEiJ_T0026942.1 MGP_CASTEiJ_G0017233.1 mouse_genomes_project 10 132542837 132543673 + MGP_CASTEiJ_P0026942 Olfr787 protein_coding protein_coding MGP_CASTEiJ_T0101975.1 MGP_CASTEiJ_G0038700.1 mouse_genomes_project 10 133184823 133185012 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0024772.1 MGP_CASTEiJ_G0016636.1 mouse_genomes_project 10 61741323 61816018 - MGP_CASTEiJ_P0024772 Stox1 protein_coding protein_coding MGP_CASTEiJ_T0024773.1 MGP_CASTEiJ_G0016636.1 mouse_genomes_project 10 61741323 61815691 - MGP_CASTEiJ_P0024773 Stox1 protein_coding protein_coding MGP_CASTEiJ_T0024774.1 MGP_CASTEiJ_G0016636.1 mouse_genomes_project 10 61748502 61815691 - MGP_CASTEiJ_P0024774 Stox1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009376.1 MGP_CASTEiJ_G0007564.1 mouse_genomes_project 10 98407967 98408052 + Mir3966 miRNA miRNA MGP_CASTEiJ_T0025374.1 MGP_CASTEiJ_G0016785.1 mouse_genomes_project 10 79856614 79877295 + MGP_CASTEiJ_P0025374 Hcn2 protein_coding protein_coding MGP_CASTEiJ_T0098313.1 MGP_CASTEiJ_G0035244.1 mouse_genomes_project 10 57978253 57982732 + pseudogene pseudogene MGP_CASTEiJ_T0099177.1 MGP_CASTEiJ_G0036090.1 mouse_genomes_project 10 56197542 56197642 + Gm24285 snRNA snRNA MGP_CASTEiJ_T0025912.1 MGP_CASTEiJ_G0016911.1 mouse_genomes_project 10 82857023 82870013 + Hcfc2 protein_coding processed_transcript MGP_CASTEiJ_T0025913.1 MGP_CASTEiJ_G0016911.1 mouse_genomes_project 10 82859862 82905385 + MGP_CASTEiJ_P0025913 Hcfc2 protein_coding protein_coding MGP_CASTEiJ_T0025914.1 MGP_CASTEiJ_G0016911.1 mouse_genomes_project 10 82860066 82873141 + MGP_CASTEiJ_P0025914 Hcfc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025915.1 MGP_CASTEiJ_G0016911.1 mouse_genomes_project 10 82889251 82902525 + MGP_CASTEiJ_P0025915 Hcfc2 protein_coding protein_coding MGP_CASTEiJ_T0026081.1 MGP_CASTEiJ_G0016958.1 mouse_genomes_project 10 88880760 88896832 + MGP_CASTEiJ_P0026081 Sycp3 protein_coding protein_coding MGP_CASTEiJ_T0026082.1 MGP_CASTEiJ_G0016958.1 mouse_genomes_project 10 88880855 88896833 + MGP_CASTEiJ_P0026082 Sycp3 protein_coding protein_coding MGP_CASTEiJ_T0026083.1 MGP_CASTEiJ_G0016958.1 mouse_genomes_project 10 88880855 88896833 + MGP_CASTEiJ_P0026083 Sycp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024813.1 MGP_CASTEiJ_G0016644.1 mouse_genomes_project 10 62227731 62228181 + MGP_CASTEiJ_P0024813 Atoh7 protein_coding protein_coding MGP_CASTEiJ_T0098321.1 MGP_CASTEiJ_G0035252.1 mouse_genomes_project 10 129810026 129830694 + pseudogene pseudogene MGP_CASTEiJ_T0025088.1 MGP_CASTEiJ_G0016691.1 mouse_genomes_project 10 75486781 75516144 + MGP_CASTEiJ_P0025088 Ggt5 protein_coding protein_coding MGP_CASTEiJ_T0025089.1 MGP_CASTEiJ_G0016691.1 mouse_genomes_project 10 75486822 75502571 + MGP_CASTEiJ_P0025089 Ggt5 protein_coding protein_coding MGP_CASTEiJ_T0025090.1 MGP_CASTEiJ_G0016691.1 mouse_genomes_project 10 75487233 75502573 + MGP_CASTEiJ_P0025090 Ggt5 protein_coding protein_coding MGP_CASTEiJ_T0025091.1 MGP_CASTEiJ_G0016691.1 mouse_genomes_project 10 75501250 75506670 + Ggt5 protein_coding processed_transcript MGP_CASTEiJ_T0025472.1 MGP_CASTEiJ_G0016810.1 mouse_genomes_project 10 80229946 80239212 + Gpx4 protein_coding processed_transcript MGP_CASTEiJ_T0025473.1 MGP_CASTEiJ_G0016810.1 mouse_genomes_project 10 80236255 80239212 + MGP_CASTEiJ_P0025473 Gpx4 protein_coding protein_coding MGP_CASTEiJ_T0025474.1 MGP_CASTEiJ_G0016810.1 mouse_genomes_project 10 80236802 80237875 + Gpx4 protein_coding processed_transcript MGP_CASTEiJ_T0025475.1 MGP_CASTEiJ_G0016810.1 mouse_genomes_project 10 80236804 80239212 + MGP_CASTEiJ_P0025475 Gpx4 protein_coding protein_coding MGP_CASTEiJ_T0025476.1 MGP_CASTEiJ_G0016810.1 mouse_genomes_project 10 80237232 80239167 + MGP_CASTEiJ_P0025476 Gpx4 protein_coding protein_coding MGP_CASTEiJ_T0025477.1 MGP_CASTEiJ_G0016810.1 mouse_genomes_project 10 80238667 80239138 + Gpx4 protein_coding retained_intron MGP_CASTEiJ_T0025478.1 MGP_CASTEiJ_G0016810.1 mouse_genomes_project 10 80238770 80239136 + Gpx4 protein_coding retained_intron MGP_CASTEiJ_T0009375.1 MGP_CASTEiJ_G0007563.1 mouse_genomes_project 10 97800076 97800171 - Gm24587 miRNA miRNA MGP_CASTEiJ_T0100398.1 MGP_CASTEiJ_G0037311.1 mouse_genomes_project 10 118344577 118344714 + Gm26495 snoRNA snoRNA MGP_CASTEiJ_T0012039.1 MGP_CASTEiJ_G0010202.1 mouse_genomes_project 10 1412051 1413227 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0026833.1 MGP_CASTEiJ_G0017177.1 mouse_genomes_project 10 131267664 131269425 + MGP_CASTEiJ_P0026833 Apon protein_coding protein_coding MGP_CASTEiJ_T0025054.1 MGP_CASTEiJ_G0016686.1 mouse_genomes_project 10 75231427 75232030 + MGP_CASTEiJ_P0025054 protein_coding protein_coding MGP_CASTEiJ_T0026901.1 MGP_CASTEiJ_G0017208.1 mouse_genomes_project 10 131883517 131887671 - MGP_CASTEiJ_P0026901 Ormdl2 protein_coding protein_coding MGP_CASTEiJ_T0005937.1 MGP_CASTEiJ_G0004984.1 mouse_genomes_project 10 64360138 64360948 - Gm28881 lincRNA lincRNA MGP_CASTEiJ_T0024147.1 MGP_CASTEiJ_G0016444.1 mouse_genomes_project 10 24950289 24958748 - Lama2 protein_coding retained_intron MGP_CASTEiJ_T0024148.1 MGP_CASTEiJ_G0016444.1 mouse_genomes_project 10 24951544 25621819 - MGP_CASTEiJ_P0024148 Lama2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024149.1 MGP_CASTEiJ_G0016444.1 mouse_genomes_project 10 24951547 25621866 - MGP_CASTEiJ_P0024149 Lama2 protein_coding protein_coding MGP_CASTEiJ_T0024150.1 MGP_CASTEiJ_G0016444.1 mouse_genomes_project 10 24951653 25306598 - MGP_CASTEiJ_P0024150 Lama2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024151.1 MGP_CASTEiJ_G0016444.1 mouse_genomes_project 10 25167521 25621819 - MGP_CASTEiJ_P0024151 Lama2 protein_coding protein_coding MGP_CASTEiJ_T0024152.1 MGP_CASTEiJ_G0016444.1 mouse_genomes_project 10 25239685 25621965 - Lama2 protein_coding retained_intron MGP_CASTEiJ_T0024153.1 MGP_CASTEiJ_G0016444.1 mouse_genomes_project 10 25331410 25621889 - Lama2 protein_coding retained_intron MGP_CASTEiJ_T0024154.1 MGP_CASTEiJ_G0016444.1 mouse_genomes_project 10 25406850 25624801 - Lama2 protein_coding retained_intron MGP_CASTEiJ_T0024155.1 MGP_CASTEiJ_G0016444.1 mouse_genomes_project 10 25460600 25621889 - Lama2 protein_coding processed_transcript MGP_CASTEiJ_T0025671.1 MGP_CASTEiJ_G0016854.1 mouse_genomes_project 10 81119781 81122297 - MGP_CASTEiJ_P0025671 protein_coding protein_coding MGP_CASTEiJ_T0024214.1 MGP_CASTEiJ_G0016470.1 mouse_genomes_project 10 32266810 32266876 - MGP_CASTEiJ_P0024214 Gm17567 protein_coding protein_coding MGP_CASTEiJ_T0024450.1 MGP_CASTEiJ_G0016543.1 mouse_genomes_project 10 44252529 44287233 + MGP_CASTEiJ_P0024450 Bves protein_coding protein_coding MGP_CASTEiJ_T0024358.1 MGP_CASTEiJ_G0016518.1 mouse_genomes_project 10 40292604 40347918 - MGP_CASTEiJ_P0024358 protein_coding protein_coding MGP_CASTEiJ_T0024156.1 MGP_CASTEiJ_G0016445.1 mouse_genomes_project 10 26075308 26631506 + MGP_CASTEiJ_P0024156 Ptprk protein_coding protein_coding MGP_CASTEiJ_T0024157.1 MGP_CASTEiJ_G0016445.1 mouse_genomes_project 10 26219296 26625552 + MGP_CASTEiJ_P0024157 Ptprk protein_coding unknown_likely_coding MGP_CASTEiJ_T0024158.1 MGP_CASTEiJ_G0016445.1 mouse_genomes_project 10 26489056 26625552 + MGP_CASTEiJ_P0024158 Ptprk protein_coding unknown_likely_coding MGP_CASTEiJ_T0024159.1 MGP_CASTEiJ_G0016445.1 mouse_genomes_project 10 26490098 26614442 + MGP_CASTEiJ_P0024159 Ptprk protein_coding unknown_likely_coding MGP_CASTEiJ_T0009379.1 MGP_CASTEiJ_G0007567.1 mouse_genomes_project 10 108833875 108834004 + Gm44403 miRNA miRNA MGP_CASTEiJ_T0026779.1 MGP_CASTEiJ_G0017165.1 mouse_genomes_project 10 130866933 130880440 + MGP_CASTEiJ_P0026779 Sdr9c7 protein_coding protein_coding MGP_CASTEiJ_T0026780.1 MGP_CASTEiJ_G0017165.1 mouse_genomes_project 10 130867190 130880429 + Sdr9c7 protein_coding processed_transcript MGP_CASTEiJ_T0026781.1 MGP_CASTEiJ_G0017165.1 mouse_genomes_project 10 130870483 130879050 + Sdr9c7 protein_coding processed_transcript MGP_CASTEiJ_T0026782.1 MGP_CASTEiJ_G0017165.1 mouse_genomes_project 10 130871859 130879001 + Sdr9c7 protein_coding processed_transcript MGP_CASTEiJ_T0000776.1 MGP_CASTEiJ_G0000717.1 mouse_genomes_project 10 25618591 25620351 - TEC TEC MGP_CASTEiJ_T0024288.1 MGP_CASTEiJ_G0016494.1 mouse_genomes_project 10 38444496 38454885 - MGP_CASTEiJ_P0024288 protein_coding protein_coding MGP_CASTEiJ_T0023948.1 MGP_CASTEiJ_G0016373.1 mouse_genomes_project 10 12046991 12049581 - MGP_CASTEiJ_P0023948 Gje1 protein_coding protein_coding MGP_CASTEiJ_T0025310.1 MGP_CASTEiJ_G0016754.1 mouse_genomes_project 10 78554302 78568180 - MGP_CASTEiJ_P0025310 Rrp1 protein_coding protein_coding MGP_CASTEiJ_T0023724.1 MGP_CASTEiJ_G0016324.1 mouse_genomes_project 10 1686625 1989567 + Esr1 protein_coding processed_transcript MGP_CASTEiJ_T0023725.1 MGP_CASTEiJ_G0016324.1 mouse_genomes_project 10 1687024 2096011 + MGP_CASTEiJ_P0023725 Esr1 protein_coding protein_coding MGP_CASTEiJ_T0023726.1 MGP_CASTEiJ_G0016324.1 mouse_genomes_project 10 1687031 1758470 + Esr1 protein_coding retained_intron MGP_CASTEiJ_T0023727.1 MGP_CASTEiJ_G0016324.1 mouse_genomes_project 10 1687048 1947391 + Esr1 protein_coding retained_intron MGP_CASTEiJ_T0023728.1 MGP_CASTEiJ_G0016324.1 mouse_genomes_project 10 1687056 2094159 + MGP_CASTEiJ_P0023728 Esr1 protein_coding protein_coding MGP_CASTEiJ_T0023729.1 MGP_CASTEiJ_G0016324.1 mouse_genomes_project 10 1806534 2092436 + MGP_CASTEiJ_P0023729 Esr1 protein_coding protein_coding MGP_CASTEiJ_T0023730.1 MGP_CASTEiJ_G0016324.1 mouse_genomes_project 10 1806534 2051780 + MGP_CASTEiJ_P0023730 Esr1 protein_coding protein_coding MGP_CASTEiJ_T0023731.1 MGP_CASTEiJ_G0016324.1 mouse_genomes_project 10 1809028 1889029 + Esr1 protein_coding processed_transcript MGP_CASTEiJ_T0023732.1 MGP_CASTEiJ_G0016324.1 mouse_genomes_project 10 2007207 2088342 + Esr1 protein_coding processed_transcript MGP_CASTEiJ_T0023733.1 MGP_CASTEiJ_G0016324.1 mouse_genomes_project 10 2022571 2092068 + Esr1 protein_coding processed_transcript MGP_CASTEiJ_T0026789.1 MGP_CASTEiJ_G0017168.1 mouse_genomes_project 10 131023147 131037673 + MGP_CASTEiJ_P0026789 Naca protein_coding protein_coding MGP_CASTEiJ_T0026790.1 MGP_CASTEiJ_G0017168.1 mouse_genomes_project 10 131023147 131037673 + MGP_CASTEiJ_P0026790 Naca protein_coding protein_coding MGP_CASTEiJ_T0026503.1 MGP_CASTEiJ_G0017081.1 mouse_genomes_project 10 119343290 119349641 - MGP_CASTEiJ_P0026503 9530003J23Rik protein_coding protein_coding MGP_CASTEiJ_T0026504.1 MGP_CASTEiJ_G0017081.1 mouse_genomes_project 10 119344887 119349690 - MGP_CASTEiJ_P0026504 9530003J23Rik protein_coding protein_coding MGP_CASTEiJ_T0026228.1 MGP_CASTEiJ_G0016987.1 mouse_genomes_project 10 94564310 94582509 + MGP_CASTEiJ_P0026228 Usp44 protein_coding protein_coding MGP_CASTEiJ_T0024838.1 MGP_CASTEiJ_G0016653.1 mouse_genomes_project 10 66391873 66497607 + Jmjd1c protein_coding retained_intron MGP_CASTEiJ_T0024839.1 MGP_CASTEiJ_G0016653.1 mouse_genomes_project 10 66392153 66463358 + Jmjd1c protein_coding retained_intron MGP_CASTEiJ_T0024840.1 MGP_CASTEiJ_G0016653.1 mouse_genomes_project 10 66392240 66530696 + MGP_CASTEiJ_P0024840 Jmjd1c protein_coding protein_coding MGP_CASTEiJ_T0024841.1 MGP_CASTEiJ_G0016653.1 mouse_genomes_project 10 66426787 66546917 + MGP_CASTEiJ_P0024841 Jmjd1c protein_coding unknown_likely_coding MGP_CASTEiJ_T0024842.1 MGP_CASTEiJ_G0016653.1 mouse_genomes_project 10 66426859 66562113 + MGP_CASTEiJ_P0024842 Jmjd1c protein_coding protein_coding MGP_CASTEiJ_T0024843.1 MGP_CASTEiJ_G0016653.1 mouse_genomes_project 10 66426859 66562105 + MGP_CASTEiJ_P0024843 Jmjd1c protein_coding protein_coding MGP_CASTEiJ_T0024844.1 MGP_CASTEiJ_G0016653.1 mouse_genomes_project 10 66491625 66521920 + Jmjd1c protein_coding retained_intron MGP_CASTEiJ_T0024845.1 MGP_CASTEiJ_G0016653.1 mouse_genomes_project 10 66491626 66562105 + MGP_CASTEiJ_P0024845 Jmjd1c protein_coding protein_coding MGP_CASTEiJ_T0024846.1 MGP_CASTEiJ_G0016653.1 mouse_genomes_project 10 66491629 66497609 + Jmjd1c protein_coding retained_intron MGP_CASTEiJ_T0024847.1 MGP_CASTEiJ_G0016653.1 mouse_genomes_project 10 66523495 66524112 + Jmjd1c protein_coding retained_intron MGP_CASTEiJ_T0024848.1 MGP_CASTEiJ_G0016653.1 mouse_genomes_project 10 66543866 66558410 + MGP_CASTEiJ_P0024848 Jmjd1c protein_coding protein_coding MGP_CASTEiJ_T0024849.1 MGP_CASTEiJ_G0016653.1 mouse_genomes_project 10 66544640 66551166 + Jmjd1c protein_coding retained_intron MGP_CASTEiJ_T0024172.1 MGP_CASTEiJ_G0016449.1 mouse_genomes_project 10 27219280 27276475 + MGP_CASTEiJ_P0024172 Soga3 protein_coding protein_coding MGP_CASTEiJ_T0024173.1 MGP_CASTEiJ_G0016449.1 mouse_genomes_project 10 27222788 27284346 + MGP_CASTEiJ_P0024173 Soga3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0098319.1 MGP_CASTEiJ_G0035250.1 mouse_genomes_project 10 81092014 81094252 + pseudogene pseudogene MGP_CASTEiJ_T0024093.1 MGP_CASTEiJ_G0016428.1 mouse_genomes_project 10 21891662 21892709 - MGP_CASTEiJ_P0024093 Taar9 protein_coding protein_coding MGP_CASTEiJ_T0099195.1 MGP_CASTEiJ_G0036108.1 mouse_genomes_project 10 93141157 93141219 + Gm25884 snRNA snRNA MGP_CASTEiJ_T0024238.1 MGP_CASTEiJ_G0016483.1 mouse_genomes_project 10 35414855 35442162 + MGP_CASTEiJ_P0024238 Hdac2 protein_coding protein_coding MGP_CASTEiJ_T0024239.1 MGP_CASTEiJ_G0016483.1 mouse_genomes_project 10 35414881 35436351 + MGP_CASTEiJ_P0024239 Hdac2 protein_coding protein_coding MGP_CASTEiJ_T0024240.1 MGP_CASTEiJ_G0016483.1 mouse_genomes_project 10 35414907 35552458 + MGP_CASTEiJ_P0024240 Hdac2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024241.1 MGP_CASTEiJ_G0016483.1 mouse_genomes_project 10 35431996 35442161 + Hdac2 protein_coding processed_transcript MGP_CASTEiJ_T0024242.1 MGP_CASTEiJ_G0016483.1 mouse_genomes_project 10 35438334 35441884 + Hdac2 protein_coding retained_intron MGP_CASTEiJ_T0025890.1 MGP_CASTEiJ_G0016904.1 mouse_genomes_project 10 82167927 82169449 + MGP_CASTEiJ_P0025890 protein_coding protein_coding MGP_CASTEiJ_T0098447.1 MGP_CASTEiJ_G0035378.1 mouse_genomes_project 10 40029251 40029356 - Gm27783 rRNA rRNA MGP_CASTEiJ_T0024253.1 MGP_CASTEiJ_G0016487.1 mouse_genomes_project 10 37585003 37597519 - MGP_CASTEiJ_P0024253 Fam229b protein_coding protein_coding MGP_CASTEiJ_T0024254.1 MGP_CASTEiJ_G0016487.1 mouse_genomes_project 10 37585007 37597513 - MGP_CASTEiJ_P0024254 Fam229b protein_coding protein_coding MGP_CASTEiJ_T0024255.1 MGP_CASTEiJ_G0016487.1 mouse_genomes_project 10 37585009 37589339 - MGP_CASTEiJ_P0024255 Fam229b protein_coding protein_coding MGP_CASTEiJ_T0024256.1 MGP_CASTEiJ_G0016487.1 mouse_genomes_project 10 37585009 37597461 - MGP_CASTEiJ_P0024256 Fam229b protein_coding protein_coding MGP_CASTEiJ_T0024257.1 MGP_CASTEiJ_G0016487.1 mouse_genomes_project 10 37585017 37597513 - MGP_CASTEiJ_P0024257 Fam229b protein_coding protein_coding MGP_CASTEiJ_T0024258.1 MGP_CASTEiJ_G0016487.1 mouse_genomes_project 10 37585018 37597513 - MGP_CASTEiJ_P0024258 Fam229b protein_coding protein_coding MGP_CASTEiJ_T0024259.1 MGP_CASTEiJ_G0016487.1 mouse_genomes_project 10 37585019 37588553 - MGP_CASTEiJ_P0024259 Fam229b protein_coding protein_coding MGP_CASTEiJ_T0024260.1 MGP_CASTEiJ_G0016487.1 mouse_genomes_project 10 37585023 37597527 - MGP_CASTEiJ_P0024260 Fam229b protein_coding protein_coding MGP_CASTEiJ_T0024261.1 MGP_CASTEiJ_G0016487.1 mouse_genomes_project 10 37585067 37597513 - MGP_CASTEiJ_P0024261 Fam229b protein_coding protein_coding MGP_CASTEiJ_T0024262.1 MGP_CASTEiJ_G0016487.1 mouse_genomes_project 10 37585820 37597470 - Fam229b protein_coding retained_intron MGP_CASTEiJ_T0025687.1 MGP_CASTEiJ_G0016861.1 mouse_genomes_project 10 81299730 81305503 - MGP_CASTEiJ_P0025687 Diras1 protein_coding protein_coding MGP_CASTEiJ_T0025688.1 MGP_CASTEiJ_G0016861.1 mouse_genomes_project 10 81302226 81305756 - MGP_CASTEiJ_P0025688 Diras1 protein_coding protein_coding MGP_CASTEiJ_T0005924.1 MGP_CASTEiJ_G0004971.1 mouse_genomes_project 10 32589545 32592646 - Gm26564 lincRNA lincRNA MGP_CASTEiJ_T0026289.1 MGP_CASTEiJ_G0017001.1 mouse_genomes_project 10 96827590 96934528 + MGP_CASTEiJ_P0026289 protein_coding protein_coding MGP_CASTEiJ_T0026290.1 MGP_CASTEiJ_G0017001.1 mouse_genomes_project 10 96827813 96931290 + MGP_CASTEiJ_P0026290 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025335.1 MGP_CASTEiJ_G0016771.1 mouse_genomes_project 10 79160451 79161836 + MGP_CASTEiJ_P0025335 Olfr57 protein_coding protein_coding MGP_CASTEiJ_T0024826.1 MGP_CASTEiJ_G0016649.1 mouse_genomes_project 10 62594828 63029936 + MGP_CASTEiJ_P0024826 Ctnna3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024827.1 MGP_CASTEiJ_G0016649.1 mouse_genomes_project 10 62595091 64241508 + MGP_CASTEiJ_P0024827 Ctnna3 protein_coding protein_coding MGP_CASTEiJ_T0024828.1 MGP_CASTEiJ_G0016649.1 mouse_genomes_project 10 62623123 64242206 + MGP_CASTEiJ_P0024828 Ctnna3 protein_coding protein_coding MGP_CASTEiJ_T0024829.1 MGP_CASTEiJ_G0016649.1 mouse_genomes_project 10 62676596 64241376 + MGP_CASTEiJ_P0024829 Ctnna3 protein_coding protein_coding MGP_CASTEiJ_T0024830.1 MGP_CASTEiJ_G0016649.1 mouse_genomes_project 10 62748361 62763431 + Ctnna3 protein_coding processed_transcript MGP_CASTEiJ_T0024831.1 MGP_CASTEiJ_G0016649.1 mouse_genomes_project 10 62994699 63273298 + Ctnna3 protein_coding processed_transcript MGP_CASTEiJ_T0024541.1 MGP_CASTEiJ_G0016575.1 mouse_genomes_project 10 56837353 56848020 + MGP_CASTEiJ_P0024541 Smpdl3a protein_coding protein_coding MGP_CASTEiJ_T0024542.1 MGP_CASTEiJ_G0016575.1 mouse_genomes_project 10 56837392 56858413 + MGP_CASTEiJ_P0024542 Smpdl3a protein_coding protein_coding MGP_CASTEiJ_T0024543.1 MGP_CASTEiJ_G0016575.1 mouse_genomes_project 10 56837586 56852952 + Smpdl3a protein_coding processed_transcript MGP_CASTEiJ_T0026418.1 MGP_CASTEiJ_G0017049.1 mouse_genomes_project 10 113108426 113112255 + MGP_CASTEiJ_P0026418 Phlda1 protein_coding protein_coding MGP_CASTEiJ_T0026419.1 MGP_CASTEiJ_G0017049.1 mouse_genomes_project 10 113111305 113111774 + Phlda1 protein_coding processed_transcript MGP_CASTEiJ_T0026690.1 MGP_CASTEiJ_G0017138.1 mouse_genomes_project 10 130151929 130155875 - MGP_CASTEiJ_P0026690 Mbd6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026691.1 MGP_CASTEiJ_G0017138.1 mouse_genomes_project 10 130151929 130160407 - MGP_CASTEiJ_P0026691 Mbd6 protein_coding protein_coding MGP_CASTEiJ_T0026692.1 MGP_CASTEiJ_G0017138.1 mouse_genomes_project 10 130151929 130153643 - MGP_CASTEiJ_P0026692 Mbd6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026693.1 MGP_CASTEiJ_G0017138.1 mouse_genomes_project 10 130151929 130160282 - MGP_CASTEiJ_P0026693 Mbd6 protein_coding protein_coding MGP_CASTEiJ_T0026694.1 MGP_CASTEiJ_G0017138.1 mouse_genomes_project 10 130152650 130154333 - MGP_CASTEiJ_P0026694 Mbd6 protein_coding protein_coding MGP_CASTEiJ_T0026695.1 MGP_CASTEiJ_G0017138.1 mouse_genomes_project 10 130153500 130154346 - MGP_CASTEiJ_P0026695 Mbd6 protein_coding protein_coding MGP_CASTEiJ_T0026696.1 MGP_CASTEiJ_G0017138.1 mouse_genomes_project 10 130156551 130160245 - MGP_CASTEiJ_P0026696 Mbd6 protein_coding protein_coding MGP_CASTEiJ_T0024438.1 MGP_CASTEiJ_G0016537.1 mouse_genomes_project 10 42718235 42767586 + MGP_CASTEiJ_P0024438 Rtn4ip1 protein_coding protein_coding MGP_CASTEiJ_T0024439.1 MGP_CASTEiJ_G0016537.1 mouse_genomes_project 10 42718817 42767595 + MGP_CASTEiJ_P0024439 Rtn4ip1 protein_coding protein_coding MGP_CASTEiJ_T0024833.1 MGP_CASTEiJ_G0016651.1 mouse_genomes_project 10 63111586 63286100 - MGP_CASTEiJ_P0024833 Lrrtm3 protein_coding protein_coding MGP_CASTEiJ_T0024834.1 MGP_CASTEiJ_G0016651.1 mouse_genomes_project 10 63113002 63286103 - Lrrtm3 protein_coding processed_transcript MGP_CASTEiJ_T0024835.1 MGP_CASTEiJ_G0016651.1 mouse_genomes_project 10 63283319 63286073 - Lrrtm3 protein_coding retained_intron MGP_CASTEiJ_T0024836.1 MGP_CASTEiJ_G0016651.1 mouse_genomes_project 10 63284877 63286076 - MGP_CASTEiJ_P0024836 Lrrtm3 protein_coding protein_coding MGP_CASTEiJ_T0025390.1 MGP_CASTEiJ_G0016789.1 mouse_genomes_project 10 79919994 79925359 + MGP_CASTEiJ_P0025390 Fstl3 protein_coding protein_coding MGP_CASTEiJ_T0025391.1 MGP_CASTEiJ_G0016789.1 mouse_genomes_project 10 79920014 79921821 + Fstl3 protein_coding retained_intron MGP_CASTEiJ_T0025392.1 MGP_CASTEiJ_G0016789.1 mouse_genomes_project 10 79923308 79925336 + Fstl3 protein_coding processed_transcript MGP_CASTEiJ_T0024136.1 MGP_CASTEiJ_G0016440.1 mouse_genomes_project 10 23981858 23983050 + MGP_CASTEiJ_P0024136 Gm9767 protein_coding protein_coding MGP_CASTEiJ_T0026567.1 MGP_CASTEiJ_G0017096.1 mouse_genomes_project 10 122452209 122511982 - MGP_CASTEiJ_P0026567 Irak3 protein_coding protein_coding MGP_CASTEiJ_T0026568.1 MGP_CASTEiJ_G0017096.1 mouse_genomes_project 10 122452226 122512454 - MGP_CASTEiJ_P0026568 Irak3 protein_coding protein_coding MGP_CASTEiJ_T0026569.1 MGP_CASTEiJ_G0017096.1 mouse_genomes_project 10 122452726 122511821 - MGP_CASTEiJ_P0026569 Irak3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026570.1 MGP_CASTEiJ_G0017096.1 mouse_genomes_project 10 122470415 122481341 - Irak3 protein_coding processed_transcript MGP_CASTEiJ_T0026571.1 MGP_CASTEiJ_G0017096.1 mouse_genomes_project 10 122475210 122511910 - Irak3 protein_coding retained_intron MGP_CASTEiJ_T0026858.1 MGP_CASTEiJ_G0017188.1 mouse_genomes_project 10 131437336 131466367 + MGP_CASTEiJ_P0026858 Rnf41 protein_coding protein_coding MGP_CASTEiJ_T0026859.1 MGP_CASTEiJ_G0017188.1 mouse_genomes_project 10 131437336 131466367 + MGP_CASTEiJ_P0026859 Rnf41 protein_coding protein_coding MGP_CASTEiJ_T0025672.1 MGP_CASTEiJ_G0016855.1 mouse_genomes_project 10 81122362 81135556 + MGP_CASTEiJ_P0025672 Sppl2b protein_coding protein_coding MGP_CASTEiJ_T0026783.1 MGP_CASTEiJ_G0017166.1 mouse_genomes_project 10 130974133 130996826 - MGP_CASTEiJ_P0026783 Hsd17b6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025923.1 MGP_CASTEiJ_G0016913.1 mouse_genomes_project 10 83039176 83065991 + MGP_CASTEiJ_P0025923 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025924.1 MGP_CASTEiJ_G0016913.1 mouse_genomes_project 10 83039183 83071909 + MGP_CASTEiJ_P0025924 protein_coding protein_coding MGP_CASTEiJ_T0005927.1 MGP_CASTEiJ_G0004974.1 mouse_genomes_project 10 38416494 38426068 + 4930547M16Rik lincRNA lincRNA MGP_CASTEiJ_T0002943.1 MGP_CASTEiJ_G0002760.1 mouse_genomes_project 10 75923091 75924391 - Gm16220 antisense antisense MGP_CASTEiJ_T0025825.1 MGP_CASTEiJ_G0016892.1 mouse_genomes_project 10 81822712 81825100 - MGP_CASTEiJ_P0025825 S1pr4 protein_coding protein_coding MGP_CASTEiJ_T0024988.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 72886897 74172470 + Pcdh15 protein_coding retained_intron MGP_CASTEiJ_T0024989.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 72886990 73538519 + Pcdh15 protein_coding retained_intron MGP_CASTEiJ_T0024990.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 72887008 73297636 + Pcdh15 protein_coding retained_intron MGP_CASTEiJ_T0024991.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650930 74497275 + MGP_CASTEiJ_P0024991 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0024992.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650930 74512393 + MGP_CASTEiJ_P0024992 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0024993.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74514332 + MGP_CASTEiJ_P0024993 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0024994.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74495165 + MGP_CASTEiJ_P0024994 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0024995.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74512743 + MGP_CASTEiJ_P0024995 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0024996.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74495165 + MGP_CASTEiJ_P0024996 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0024997.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74514496 + MGP_CASTEiJ_P0024997 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0024998.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74514332 + MGP_CASTEiJ_P0024998 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0024999.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74512743 + MGP_CASTEiJ_P0024999 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025000.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74517762 + MGP_CASTEiJ_P0025000 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025001.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74512743 + MGP_CASTEiJ_P0025001 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025002.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74512743 + MGP_CASTEiJ_P0025002 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025003.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74495037 + MGP_CASTEiJ_P0025003 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025004.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74495165 + MGP_CASTEiJ_P0025004 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025005.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74512743 + MGP_CASTEiJ_P0025005 Pcdh15 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025006.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74495165 + MGP_CASTEiJ_P0025006 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025007.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74512743 + MGP_CASTEiJ_P0025007 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025008.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74496113 + MGP_CASTEiJ_P0025008 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025009.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74512743 + MGP_CASTEiJ_P0025009 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025010.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74512743 + MGP_CASTEiJ_P0025010 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025011.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74495165 + MGP_CASTEiJ_P0025011 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025012.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74495165 + MGP_CASTEiJ_P0025012 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025013.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74495165 + MGP_CASTEiJ_P0025013 Pcdh15 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025014.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74495165 + MGP_CASTEiJ_P0025014 Pcdh15 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025015.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73650946 74495165 + MGP_CASTEiJ_P0025015 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025016.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73651006 74368643 + MGP_CASTEiJ_P0025016 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025017.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73651006 74368643 + MGP_CASTEiJ_P0025017 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025018.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73651006 74368643 + MGP_CASTEiJ_P0025018 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025019.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73783283 74514186 + MGP_CASTEiJ_P0025019 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025020.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73783283 74514090 + MGP_CASTEiJ_P0025020 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025021.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 73783283 74512234 + MGP_CASTEiJ_P0025021 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025022.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 74028351 74512788 + MGP_CASTEiJ_P0025022 Pcdh15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025023.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 74158092 74189373 + Pcdh15 protein_coding processed_transcript MGP_CASTEiJ_T0025024.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 74210488 74495168 + MGP_CASTEiJ_P0025024 Pcdh15 protein_coding protein_coding MGP_CASTEiJ_T0025025.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 74241404 74255059 + Pcdh15 protein_coding retained_intron MGP_CASTEiJ_T0025026.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 74449306 74487117 + Pcdh15 protein_coding retained_intron MGP_CASTEiJ_T0025027.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 74493412 74514232 + Pcdh15 protein_coding processed_transcript MGP_CASTEiJ_T0025028.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 74493909 74503311 + Pcdh15 protein_coding retained_intron MGP_CASTEiJ_T0025029.1 MGP_CASTEiJ_G0016678.1 mouse_genomes_project 10 74494334 74509035 + Pcdh15 protein_coding processed_transcript MGP_CASTEiJ_T0023720.1 MGP_CASTEiJ_G0016323.1 mouse_genomes_project 10 1542402 1630150 + MGP_CASTEiJ_P0023720 Ccdc170 protein_coding protein_coding MGP_CASTEiJ_T0023721.1 MGP_CASTEiJ_G0016323.1 mouse_genomes_project 10 1571457 1630150 + MGP_CASTEiJ_P0023721 Ccdc170 protein_coding protein_coding MGP_CASTEiJ_T0023722.1 MGP_CASTEiJ_G0016323.1 mouse_genomes_project 10 1573127 1575885 + MGP_CASTEiJ_P0023722 Ccdc170 protein_coding protein_coding MGP_CASTEiJ_T0023723.1 MGP_CASTEiJ_G0016323.1 mouse_genomes_project 10 1599390 1608023 + Ccdc170 protein_coding processed_transcript MGP_CASTEiJ_T0099203.1 MGP_CASTEiJ_G0036116.1 mouse_genomes_project 10 112698627 112698730 - Gm22101 snRNA snRNA MGP_CASTEiJ_T0026226.1 MGP_CASTEiJ_G0016986.1 mouse_genomes_project 10 94360222 94364288 + MGP_CASTEiJ_P0026226 Ntn4 protein_coding protein_coding MGP_CASTEiJ_T0026227.1 MGP_CASTEiJ_G0016986.1 mouse_genomes_project 10 94360590 94473627 + MGP_CASTEiJ_P0026227 Ntn4 protein_coding protein_coding MGP_CASTEiJ_T0026689.1 MGP_CASTEiJ_G0017137.1 mouse_genomes_project 10 130136394 130151933 + MGP_CASTEiJ_P0026689 Dctn2 protein_coding protein_coding MGP_CASTEiJ_T0024899.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69000724 69359714 + protein_coding retained_intron MGP_CASTEiJ_T0024900.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69000724 69199931 + protein_coding processed_transcript MGP_CASTEiJ_T0024901.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69000724 69539135 + MGP_CASTEiJ_P0024901 protein_coding protein_coding MGP_CASTEiJ_T0024902.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69000767 69336588 + protein_coding retained_intron MGP_CASTEiJ_T0024903.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69000795 69536343 + MGP_CASTEiJ_P0024903 protein_coding protein_coding MGP_CASTEiJ_T0024904.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69000799 69536596 + MGP_CASTEiJ_P0024904 protein_coding protein_coding MGP_CASTEiJ_T0024905.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69000799 69536596 + MGP_CASTEiJ_P0024905 protein_coding protein_coding MGP_CASTEiJ_T0024906.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69001017 69305891 + MGP_CASTEiJ_P0024906 protein_coding protein_coding MGP_CASTEiJ_T0024907.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69001160 69535596 + MGP_CASTEiJ_P0024907 protein_coding protein_coding MGP_CASTEiJ_T0024908.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69001174 69522461 + MGP_CASTEiJ_P0024908 protein_coding protein_coding MGP_CASTEiJ_T0024909.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69001174 69522461 + MGP_CASTEiJ_P0024909 protein_coding protein_coding MGP_CASTEiJ_T0024910.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69001174 69522461 + MGP_CASTEiJ_P0024910 protein_coding protein_coding MGP_CASTEiJ_T0024911.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69001174 69522461 + MGP_CASTEiJ_P0024911 protein_coding protein_coding MGP_CASTEiJ_T0024912.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69001174 69522461 + MGP_CASTEiJ_P0024912 protein_coding protein_coding MGP_CASTEiJ_T0024913.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69185415 69189608 + protein_coding retained_intron MGP_CASTEiJ_T0024914.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69185467 69522459 + MGP_CASTEiJ_P0024914 protein_coding protein_coding MGP_CASTEiJ_T0024915.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69185571 69501329 + protein_coding retained_intron MGP_CASTEiJ_T0024916.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69185575 69303448 + protein_coding retained_intron MGP_CASTEiJ_T0024917.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69266517 69291357 + protein_coding retained_intron MGP_CASTEiJ_T0024918.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69266528 69344420 + MGP_CASTEiJ_P0024918 protein_coding protein_coding MGP_CASTEiJ_T0024919.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69268440 69336010 + MGP_CASTEiJ_P0024919 protein_coding protein_coding MGP_CASTEiJ_T0024920.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69386013 69535651 + MGP_CASTEiJ_P0024920 protein_coding protein_coding MGP_CASTEiJ_T0024921.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69386936 69477752 + MGP_CASTEiJ_P0024921 protein_coding protein_coding MGP_CASTEiJ_T0024922.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69404812 69456023 + protein_coding retained_intron MGP_CASTEiJ_T0024923.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69427378 69428223 + protein_coding retained_intron MGP_CASTEiJ_T0024924.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69427378 69535687 + MGP_CASTEiJ_P0024924 protein_coding protein_coding MGP_CASTEiJ_T0024925.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69427415 69536668 + MGP_CASTEiJ_P0024925 protein_coding protein_coding MGP_CASTEiJ_T0024926.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69427656 69536596 + MGP_CASTEiJ_P0024926 protein_coding protein_coding MGP_CASTEiJ_T0024927.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69427656 69536596 + MGP_CASTEiJ_P0024927 protein_coding protein_coding MGP_CASTEiJ_T0024928.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69427656 69536596 + MGP_CASTEiJ_P0024928 protein_coding protein_coding MGP_CASTEiJ_T0024929.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69427688 69522633 + MGP_CASTEiJ_P0024929 protein_coding protein_coding MGP_CASTEiJ_T0024930.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69427702 69500599 + protein_coding retained_intron MGP_CASTEiJ_T0024931.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69427838 69536358 + MGP_CASTEiJ_P0024931 protein_coding protein_coding MGP_CASTEiJ_T0024932.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69427964 69536343 + MGP_CASTEiJ_P0024932 protein_coding protein_coding MGP_CASTEiJ_T0024933.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69428017 69535725 + MGP_CASTEiJ_P0024933 protein_coding protein_coding MGP_CASTEiJ_T0024934.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69477663 69488395 + protein_coding retained_intron MGP_CASTEiJ_T0024935.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69484592 69505530 + MGP_CASTEiJ_P0024935 protein_coding protein_coding MGP_CASTEiJ_T0024936.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69485483 69492199 + MGP_CASTEiJ_P0024936 protein_coding protein_coding MGP_CASTEiJ_T0024937.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69486444 69536596 + MGP_CASTEiJ_P0024937 protein_coding protein_coding MGP_CASTEiJ_T0024938.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69488214 69505735 + protein_coding retained_intron MGP_CASTEiJ_T0024939.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69493937 69536345 + MGP_CASTEiJ_P0024939 protein_coding protein_coding MGP_CASTEiJ_T0024940.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69496023 69536164 + MGP_CASTEiJ_P0024940 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024941.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69498179 69504201 + MGP_CASTEiJ_P0024941 protein_coding protein_coding MGP_CASTEiJ_T0024942.1 MGP_CASTEiJ_G0016666.1 mouse_genomes_project 10 69500391 69511605 + protein_coding retained_intron MGP_CASTEiJ_T0024286.1 MGP_CASTEiJ_G0016493.1 mouse_genomes_project 10 38406462 38416404 - MGP_CASTEiJ_P0024286 Mfsd4b4 protein_coding protein_coding MGP_CASTEiJ_T0024287.1 MGP_CASTEiJ_G0016493.1 mouse_genomes_project 10 38406462 38412968 - MGP_CASTEiJ_P0024287 Mfsd4b4 protein_coding protein_coding MGP_CASTEiJ_T0025467.1 MGP_CASTEiJ_G0016809.1 mouse_genomes_project 10 80216424 80217659 - Polr2e protein_coding retained_intron MGP_CASTEiJ_T0025468.1 MGP_CASTEiJ_G0016809.1 mouse_genomes_project 10 80216424 80220184 - Polr2e protein_coding retained_intron MGP_CASTEiJ_T0025469.1 MGP_CASTEiJ_G0016809.1 mouse_genomes_project 10 80216424 80220265 - MGP_CASTEiJ_P0025469 Polr2e protein_coding protein_coding MGP_CASTEiJ_T0025470.1 MGP_CASTEiJ_G0016809.1 mouse_genomes_project 10 80216426 80220124 - Polr2e protein_coding retained_intron MGP_CASTEiJ_T0025471.1 MGP_CASTEiJ_G0016809.1 mouse_genomes_project 10 80216650 80220175 - Polr2e protein_coding retained_intron MGP_CASTEiJ_T0026312.1 MGP_CASTEiJ_G0017015.1 mouse_genomes_project 10 100327420 100331679 + MGP_CASTEiJ_P0026312 Dusp6 protein_coding protein_coding MGP_CASTEiJ_T0098444.1 MGP_CASTEiJ_G0035375.1 mouse_genomes_project 10 24285289 24285389 + Gm23757 rRNA rRNA MGP_CASTEiJ_T0005906.1 MGP_CASTEiJ_G0004958.1 mouse_genomes_project 10 6663620 6667868 - Gm28904 lincRNA lincRNA MGP_CASTEiJ_T0002906.1 MGP_CASTEiJ_G0002731.1 mouse_genomes_project 10 8427943 8428643 - Gm16577 antisense antisense MGP_CASTEiJ_T0002949.1 MGP_CASTEiJ_G0002765.1 mouse_genomes_project 10 76554014 76561088 - Gm15343 antisense antisense MGP_CASTEiJ_T0006004.1 MGP_CASTEiJ_G0005025.1 mouse_genomes_project 10 131699848 131702196 + lincRNA lincRNA MGP_CASTEiJ_T0023703.1 MGP_CASTEiJ_G0016320.1 mouse_genomes_project 10 1410229 1431281 - MGP_CASTEiJ_P0023703 Zbtb2 protein_coding protein_coding MGP_CASTEiJ_T0023704.1 MGP_CASTEiJ_G0016320.1 mouse_genomes_project 10 1410492 1430635 - MGP_CASTEiJ_P0023704 Zbtb2 protein_coding protein_coding MGP_CASTEiJ_T0100376.1 MGP_CASTEiJ_G0037289.1 mouse_genomes_project 10 62035068 62035185 - Gm25862 snoRNA snoRNA MGP_CASTEiJ_T0025459.1 MGP_CASTEiJ_G0016807.1 mouse_genomes_project 10 80175719 80194797 + MGP_CASTEiJ_P0025459 Abca7 protein_coding protein_coding MGP_CASTEiJ_T0025460.1 MGP_CASTEiJ_G0016807.1 mouse_genomes_project 10 80176801 80194778 + MGP_CASTEiJ_P0025460 Abca7 protein_coding protein_coding MGP_CASTEiJ_T0025461.1 MGP_CASTEiJ_G0016807.1 mouse_genomes_project 10 80176840 80194793 + MGP_CASTEiJ_P0025461 Abca7 protein_coding protein_coding MGP_CASTEiJ_T0024137.1 MGP_CASTEiJ_G0016441.1 mouse_genomes_project 10 24143133 24191444 + MGP_CASTEiJ_P0024137 Samd3 protein_coding protein_coding MGP_CASTEiJ_T0024138.1 MGP_CASTEiJ_G0016441.1 mouse_genomes_project 10 24143133 24173701 + MGP_CASTEiJ_P0024138 Samd3 protein_coding protein_coding MGP_CASTEiJ_T0024139.1 MGP_CASTEiJ_G0016441.1 mouse_genomes_project 10 24143558 24191245 + MGP_CASTEiJ_P0024139 Samd3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023916.1 MGP_CASTEiJ_G0016366.1 mouse_genomes_project 10 10800372 10836981 - MGP_CASTEiJ_P0023916 Pex3 protein_coding protein_coding MGP_CASTEiJ_T0023917.1 MGP_CASTEiJ_G0016366.1 mouse_genomes_project 10 10802349 10836737 - MGP_CASTEiJ_P0023917 Pex3 protein_coding protein_coding MGP_CASTEiJ_T0023918.1 MGP_CASTEiJ_G0016366.1 mouse_genomes_project 10 10806425 10813444 - Pex3 protein_coding retained_intron MGP_CASTEiJ_T0023919.1 MGP_CASTEiJ_G0016366.1 mouse_genomes_project 10 10808733 10836703 - Pex3 protein_coding processed_transcript MGP_CASTEiJ_T0023920.1 MGP_CASTEiJ_G0016366.1 mouse_genomes_project 10 10813209 10836658 - Pex3 protein_coding processed_transcript MGP_CASTEiJ_T0012071.1 MGP_CASTEiJ_G0010234.1 mouse_genomes_project 10 58215326 58215911 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100392.1 MGP_CASTEiJ_G0037305.1 mouse_genomes_project 10 107363692 107363824 - Gm25342 snoRNA snoRNA MGP_CASTEiJ_T0009401.1 MGP_CASTEiJ_G0007589.1 mouse_genomes_project 10 131624482 131624543 - Mir6917 miRNA miRNA MGP_CASTEiJ_T0010958.1 MGP_CASTEiJ_G0009146.1 mouse_genomes_project 10 117166557 117166863 - Gm22794 misc_RNA misc_RNA MGP_CASTEiJ_T0005930.1 MGP_CASTEiJ_G0004977.1 mouse_genomes_project 10 53073169 53078494 + Gm16998 lincRNA lincRNA MGP_CASTEiJ_T0026971.1 MGP_CASTEiJ_G0017255.1 mouse_genomes_project 10 133162569 133163388 - MGP_CASTEiJ_P0026971 protein_coding protein_coding MGP_CASTEiJ_T0010936.1 MGP_CASTEiJ_G0009124.1 mouse_genomes_project 10 10337304 10337540 - Gm27741 misc_RNA misc_RNA MGP_CASTEiJ_T0024219.1 MGP_CASTEiJ_G0016474.1 mouse_genomes_project 10 32363438 32368591 - MGP_CASTEiJ_P0024219 Fam26e protein_coding protein_coding MGP_CASTEiJ_T0025525.1 MGP_CASTEiJ_G0016817.1 mouse_genomes_project 10 80366762 80368996 + MGP_CASTEiJ_P0025525 1600002K03Rik protein_coding protein_coding MGP_CASTEiJ_T0024761.1 MGP_CASTEiJ_G0016633.1 mouse_genomes_project 10 61613600 61661533 - MGP_CASTEiJ_P0024761 Kif1bp protein_coding protein_coding MGP_CASTEiJ_T0024762.1 MGP_CASTEiJ_G0016633.1 mouse_genomes_project 10 61614650 61650041 - MGP_CASTEiJ_P0024762 Kif1bp protein_coding protein_coding MGP_CASTEiJ_T0024763.1 MGP_CASTEiJ_G0016633.1 mouse_genomes_project 10 61635622 61661550 - MGP_CASTEiJ_P0024763 Kif1bp protein_coding protein_coding MGP_CASTEiJ_T0024764.1 MGP_CASTEiJ_G0016633.1 mouse_genomes_project 10 61635626 61661509 - MGP_CASTEiJ_P0024764 Kif1bp protein_coding protein_coding MGP_CASTEiJ_T0024765.1 MGP_CASTEiJ_G0016633.1 mouse_genomes_project 10 61635695 61644945 - MGP_CASTEiJ_P0024765 Kif1bp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024766.1 MGP_CASTEiJ_G0016633.1 mouse_genomes_project 10 61636751 61640777 - Kif1bp protein_coding retained_intron MGP_CASTEiJ_T0024767.1 MGP_CASTEiJ_G0016633.1 mouse_genomes_project 10 61644694 61650029 - Kif1bp protein_coding retained_intron MGP_CASTEiJ_T0024768.1 MGP_CASTEiJ_G0016633.1 mouse_genomes_project 10 61649642 61661487 - Kif1bp protein_coding retained_intron MGP_CASTEiJ_T0023714.1 MGP_CASTEiJ_G0016322.1 mouse_genomes_project 10 1482145 1507297 + MGP_CASTEiJ_P0023714 Armt1 protein_coding protein_coding MGP_CASTEiJ_T0023715.1 MGP_CASTEiJ_G0016322.1 mouse_genomes_project 10 1482259 1489511 + MGP_CASTEiJ_P0023715 Armt1 protein_coding protein_coding MGP_CASTEiJ_T0023716.1 MGP_CASTEiJ_G0016322.1 mouse_genomes_project 10 1482266 1501438 + Armt1 protein_coding processed_transcript MGP_CASTEiJ_T0023717.1 MGP_CASTEiJ_G0016322.1 mouse_genomes_project 10 1482274 1484714 + Armt1 protein_coding retained_intron MGP_CASTEiJ_T0023718.1 MGP_CASTEiJ_G0016322.1 mouse_genomes_project 10 1482279 1506107 + MGP_CASTEiJ_P0023718 Armt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023719.1 MGP_CASTEiJ_G0016322.1 mouse_genomes_project 10 1484128 1490006 + Armt1 protein_coding processed_transcript MGP_CASTEiJ_T0023874.1 MGP_CASTEiJ_G0016359.1 mouse_genomes_project 10 10182065 10208284 - MGP_CASTEiJ_P0023874 Stx11 protein_coding protein_coding MGP_CASTEiJ_T0023875.1 MGP_CASTEiJ_G0016359.1 mouse_genomes_project 10 10182065 10208284 - MGP_CASTEiJ_P0023875 Stx11 protein_coding protein_coding MGP_CASTEiJ_T0024645.1 MGP_CASTEiJ_G0016602.1 mouse_genomes_project 10 59266185 59270014 + MGP_CASTEiJ_P0024645 Gm17455 protein_coding protein_coding MGP_CASTEiJ_T0010941.1 MGP_CASTEiJ_G0009129.1 mouse_genomes_project 10 49810041 49810331 - Gm23883 misc_RNA misc_RNA MGP_CASTEiJ_T0099206.1 MGP_CASTEiJ_G0036119.1 mouse_genomes_project 10 119813485 119813592 - Gm25709 snRNA snRNA MGP_CASTEiJ_T0010942.1 MGP_CASTEiJ_G0009130.1 mouse_genomes_project 10 62031228 62031514 + Gm22803 misc_RNA misc_RNA MGP_CASTEiJ_T0009333.1 MGP_CASTEiJ_G0007521.1 mouse_genomes_project 10 43218079 43218172 + Mir1929 miRNA miRNA MGP_CASTEiJ_T0005987.1 MGP_CASTEiJ_G0005012.1 mouse_genomes_project 10 104266485 104267351 - Gm17028 lincRNA lincRNA MGP_CASTEiJ_T0016373.1 MGP_CASTEiJ_G0014448.1 mouse_genomes_project 10 38116790 38237794 - E130307A14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016374.1 MGP_CASTEiJ_G0014448.1 mouse_genomes_project 10 38116792 38237793 - E130307A14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016375.1 MGP_CASTEiJ_G0014448.1 mouse_genomes_project 10 38118002 38237603 - E130307A14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016376.1 MGP_CASTEiJ_G0014448.1 mouse_genomes_project 10 38118032 38237636 - E130307A14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016377.1 MGP_CASTEiJ_G0014448.1 mouse_genomes_project 10 38118075 38237788 - E130307A14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016378.1 MGP_CASTEiJ_G0014448.1 mouse_genomes_project 10 38118091 38237601 - E130307A14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016379.1 MGP_CASTEiJ_G0014448.1 mouse_genomes_project 10 38118350 38237563 - E130307A14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016380.1 MGP_CASTEiJ_G0014448.1 mouse_genomes_project 10 38138281 38146565 - E130307A14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016381.1 MGP_CASTEiJ_G0014448.1 mouse_genomes_project 10 38138373 38237769 - E130307A14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016382.1 MGP_CASTEiJ_G0014448.1 mouse_genomes_project 10 38153721 38234077 - E130307A14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016383.1 MGP_CASTEiJ_G0014448.1 mouse_genomes_project 10 38154307 38237793 - E130307A14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016384.1 MGP_CASTEiJ_G0014448.1 mouse_genomes_project 10 38181158 38237793 - E130307A14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016385.1 MGP_CASTEiJ_G0014448.1 mouse_genomes_project 10 38227296 38237754 - E130307A14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0024452.1 MGP_CASTEiJ_G0016545.1 mouse_genomes_project 10 44475685 44611385 + MGP_CASTEiJ_P0024452 Hace1 protein_coding protein_coding MGP_CASTEiJ_T0024453.1 MGP_CASTEiJ_G0016545.1 mouse_genomes_project 10 44475997 44501370 + MGP_CASTEiJ_P0024453 Hace1 protein_coding protein_coding MGP_CASTEiJ_T0024454.1 MGP_CASTEiJ_G0016545.1 mouse_genomes_project 10 44476130 44501324 + Hace1 protein_coding processed_transcript MGP_CASTEiJ_T0024455.1 MGP_CASTEiJ_G0016545.1 mouse_genomes_project 10 44483479 44549723 + Hace1 protein_coding processed_transcript MGP_CASTEiJ_T0024456.1 MGP_CASTEiJ_G0016545.1 mouse_genomes_project 10 44576665 44611199 + MGP_CASTEiJ_P0024456 Hace1 protein_coding protein_coding MGP_CASTEiJ_T0024457.1 MGP_CASTEiJ_G0016545.1 mouse_genomes_project 10 44577710 44611199 + MGP_CASTEiJ_P0024457 Hace1 protein_coding protein_coding MGP_CASTEiJ_T0024458.1 MGP_CASTEiJ_G0016545.1 mouse_genomes_project 10 44582262 44611311 + Hace1 protein_coding retained_intron MGP_CASTEiJ_T0024602.1 MGP_CASTEiJ_G0016595.1 mouse_genomes_project 10 58798680 58814175 - MGP_CASTEiJ_P0024602 Anapc16 protein_coding protein_coding MGP_CASTEiJ_T0024603.1 MGP_CASTEiJ_G0016595.1 mouse_genomes_project 10 58799175 58814151 - MGP_CASTEiJ_P0024603 Anapc16 protein_coding protein_coding MGP_CASTEiJ_T0024604.1 MGP_CASTEiJ_G0016595.1 mouse_genomes_project 10 58799671 58801740 - Anapc16 protein_coding processed_transcript MGP_CASTEiJ_T0024605.1 MGP_CASTEiJ_G0016595.1 mouse_genomes_project 10 58799690 58814035 - MGP_CASTEiJ_P0024605 Anapc16 protein_coding protein_coding MGP_CASTEiJ_T0024606.1 MGP_CASTEiJ_G0016595.1 mouse_genomes_project 10 58799770 58814126 - MGP_CASTEiJ_P0024606 Anapc16 protein_coding protein_coding MGP_CASTEiJ_T0024607.1 MGP_CASTEiJ_G0016595.1 mouse_genomes_project 10 58799877 58813809 - MGP_CASTEiJ_P0024607 Anapc16 protein_coding protein_coding MGP_CASTEiJ_T0024608.1 MGP_CASTEiJ_G0016595.1 mouse_genomes_project 10 58801722 58802437 - Anapc16 protein_coding retained_intron MGP_CASTEiJ_T0024609.1 MGP_CASTEiJ_G0016595.1 mouse_genomes_project 10 58806773 58809240 - Anapc16 protein_coding retained_intron MGP_CASTEiJ_T0026621.1 MGP_CASTEiJ_G0017112.1 mouse_genomes_project 10 124935209 124940213 + MGP_CASTEiJ_P0026621 Avpr1a protein_coding protein_coding MGP_CASTEiJ_T0024408.1 MGP_CASTEiJ_G0016528.1 mouse_genomes_project 10 41600689 41705969 + MGP_CASTEiJ_P0024408 Scml4 protein_coding protein_coding MGP_CASTEiJ_T0024409.1 MGP_CASTEiJ_G0016528.1 mouse_genomes_project 10 41600848 41674844 + MGP_CASTEiJ_P0024409 Scml4 protein_coding protein_coding MGP_CASTEiJ_T0024410.1 MGP_CASTEiJ_G0016528.1 mouse_genomes_project 10 41600972 41678445 + MGP_CASTEiJ_P0024410 Scml4 protein_coding protein_coding MGP_CASTEiJ_T0024411.1 MGP_CASTEiJ_G0016528.1 mouse_genomes_project 10 41601098 41705967 + MGP_CASTEiJ_P0024411 Scml4 protein_coding protein_coding MGP_CASTEiJ_T0024412.1 MGP_CASTEiJ_G0016528.1 mouse_genomes_project 10 41605814 41674709 + MGP_CASTEiJ_P0024412 Scml4 protein_coding protein_coding MGP_CASTEiJ_T0024413.1 MGP_CASTEiJ_G0016528.1 mouse_genomes_project 10 41642776 41679223 + MGP_CASTEiJ_P0024413 Scml4 protein_coding protein_coding MGP_CASTEiJ_T0024414.1 MGP_CASTEiJ_G0016528.1 mouse_genomes_project 10 41678421 41703960 + Scml4 protein_coding retained_intron MGP_CASTEiJ_T0024415.1 MGP_CASTEiJ_G0016528.1 mouse_genomes_project 10 41678999 41692340 + Scml4 protein_coding retained_intron MGP_CASTEiJ_T0024416.1 MGP_CASTEiJ_G0016528.1 mouse_genomes_project 10 41684068 41703911 + Scml4 protein_coding processed_transcript MGP_CASTEiJ_T0026442.1 MGP_CASTEiJ_G0017059.1 mouse_genomes_project 10 116965654 117082991 - MGP_CASTEiJ_P0026442 Tph2 protein_coding protein_coding MGP_CASTEiJ_T0026443.1 MGP_CASTEiJ_G0017059.1 mouse_genomes_project 10 117071177 117072673 - Tph2 protein_coding processed_transcript MGP_CASTEiJ_T0024221.1 MGP_CASTEiJ_G0016476.1 mouse_genomes_project 10 32429297 32492201 - MGP_CASTEiJ_P0024221 Dse protein_coding protein_coding MGP_CASTEiJ_T0025106.1 MGP_CASTEiJ_G0016698.1 mouse_genomes_project 10 75723249 75730743 - MGP_CASTEiJ_P0025106 Gstt4 protein_coding protein_coding MGP_CASTEiJ_T0025107.1 MGP_CASTEiJ_G0016698.1 mouse_genomes_project 10 75723250 75730727 - MGP_CASTEiJ_P0025107 Gstt4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009387.1 MGP_CASTEiJ_G0007575.1 mouse_genomes_project 10 125514406 125514491 - Mirlet7i miRNA miRNA MGP_CASTEiJ_T0026769.1 MGP_CASTEiJ_G0017157.1 mouse_genomes_project 10 130661562 130675455 - MGP_CASTEiJ_P0026769 Gpr182 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026328.1 MGP_CASTEiJ_G0017022.1 mouse_genomes_project 10 101636841 101649422 + MGP_CASTEiJ_P0026328 1700017N19Rik protein_coding protein_coding MGP_CASTEiJ_T0026329.1 MGP_CASTEiJ_G0017022.1 mouse_genomes_project 10 101638689 101666442 + MGP_CASTEiJ_P0026329 1700017N19Rik protein_coding protein_coding MGP_CASTEiJ_T0026330.1 MGP_CASTEiJ_G0017022.1 mouse_genomes_project 10 101638709 101666528 + MGP_CASTEiJ_P0026330 1700017N19Rik protein_coding protein_coding MGP_CASTEiJ_T0026331.1 MGP_CASTEiJ_G0017022.1 mouse_genomes_project 10 101638715 101658645 + MGP_CASTEiJ_P0026331 1700017N19Rik protein_coding protein_coding MGP_CASTEiJ_T0026332.1 MGP_CASTEiJ_G0017022.1 mouse_genomes_project 10 101638720 101666522 + MGP_CASTEiJ_P0026332 1700017N19Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026333.1 MGP_CASTEiJ_G0017022.1 mouse_genomes_project 10 101638724 101666522 + MGP_CASTEiJ_P0026333 1700017N19Rik protein_coding protein_coding MGP_CASTEiJ_T0026334.1 MGP_CASTEiJ_G0017022.1 mouse_genomes_project 10 101638735 101666444 + MGP_CASTEiJ_P0026334 1700017N19Rik protein_coding protein_coding MGP_CASTEiJ_T0026335.1 MGP_CASTEiJ_G0017022.1 mouse_genomes_project 10 101638747 101666532 + MGP_CASTEiJ_P0026335 1700017N19Rik protein_coding protein_coding MGP_CASTEiJ_T0026336.1 MGP_CASTEiJ_G0017022.1 mouse_genomes_project 10 101655285 101666439 + MGP_CASTEiJ_P0026336 1700017N19Rik protein_coding protein_coding MGP_CASTEiJ_T0009366.1 MGP_CASTEiJ_G0007554.1 mouse_genomes_project 10 85573134 85573238 + Gm25281 miRNA miRNA MGP_CASTEiJ_T0024691.1 MGP_CASTEiJ_G0016618.1 mouse_genomes_project 10 60690605 60700628 + MGP_CASTEiJ_P0024691 Tysnd1 protein_coding protein_coding MGP_CASTEiJ_T0025097.1 MGP_CASTEiJ_G0016695.1 mouse_genomes_project 10 75675152 75684638 - MGP_CASTEiJ_P0025097 Gm20441 protein_coding protein_coding MGP_CASTEiJ_T0024655.1 MGP_CASTEiJ_G0016605.1 mouse_genomes_project 10 60003454 60010524 + MGP_CASTEiJ_P0024655 Pcbd1 protein_coding protein_coding MGP_CASTEiJ_T0026187.1 MGP_CASTEiJ_G0016975.1 mouse_genomes_project 10 91741456 91767375 - MGP_CASTEiJ_P0026187 Tmpo protein_coding protein_coding MGP_CASTEiJ_T0026188.1 MGP_CASTEiJ_G0016975.1 mouse_genomes_project 10 91741456 91767375 - MGP_CASTEiJ_P0026188 Tmpo protein_coding protein_coding MGP_CASTEiJ_T0026189.1 MGP_CASTEiJ_G0016975.1 mouse_genomes_project 10 91741456 91767375 - MGP_CASTEiJ_P0026189 Tmpo protein_coding protein_coding MGP_CASTEiJ_T0026190.1 MGP_CASTEiJ_G0016975.1 mouse_genomes_project 10 91741456 91767375 - MGP_CASTEiJ_P0026190 Tmpo protein_coding protein_coding MGP_CASTEiJ_T0026191.1 MGP_CASTEiJ_G0016975.1 mouse_genomes_project 10 91754874 91767375 - MGP_CASTEiJ_P0026191 Tmpo protein_coding protein_coding MGP_CASTEiJ_T0024747.1 MGP_CASTEiJ_G0016629.1 mouse_genomes_project 10 61497091 61517586 - MGP_CASTEiJ_P0024747 Supv3l1 protein_coding protein_coding MGP_CASTEiJ_T0024748.1 MGP_CASTEiJ_G0016629.1 mouse_genomes_project 10 61497137 61517531 - MGP_CASTEiJ_P0024748 Supv3l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024749.1 MGP_CASTEiJ_G0016629.1 mouse_genomes_project 10 61497223 61498505 - Supv3l1 protein_coding retained_intron MGP_CASTEiJ_T0024750.1 MGP_CASTEiJ_G0016629.1 mouse_genomes_project 10 61497326 61498852 - Supv3l1 protein_coding retained_intron MGP_CASTEiJ_T0024751.1 MGP_CASTEiJ_G0016629.1 mouse_genomes_project 10 61500237 61501005 - Supv3l1 protein_coding processed_transcript MGP_CASTEiJ_T0024440.1 MGP_CASTEiJ_G0016538.1 mouse_genomes_project 10 42770003 42830302 - MGP_CASTEiJ_P0024440 Aim1 protein_coding protein_coding MGP_CASTEiJ_T0024441.1 MGP_CASTEiJ_G0016538.1 mouse_genomes_project 10 42770333 42986366 - MGP_CASTEiJ_P0024441 Aim1 protein_coding protein_coding MGP_CASTEiJ_T0026766.1 MGP_CASTEiJ_G0017155.1 mouse_genomes_project 10 130639409 130648557 + MGP_CASTEiJ_P0026766 Tac2 protein_coding protein_coding MGP_CASTEiJ_T0026767.1 MGP_CASTEiJ_G0017155.1 mouse_genomes_project 10 130642208 130648557 + MGP_CASTEiJ_P0026767 Tac2 protein_coding protein_coding MGP_CASTEiJ_T0002907.1 MGP_CASTEiJ_G0002732.1 mouse_genomes_project 10 11466650 11471358 - Gm28289 antisense antisense MGP_CASTEiJ_T0012040.1 MGP_CASTEiJ_G0010203.1 mouse_genomes_project 10 4710168 4710895 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0025658.1 MGP_CASTEiJ_G0016850.1 mouse_genomes_project 10 81063957 81066358 + MGP_CASTEiJ_P0025658 Amh protein_coding protein_coding MGP_CASTEiJ_T0026731.1 MGP_CASTEiJ_G0017146.1 mouse_genomes_project 10 130392282 130399749 + MGP_CASTEiJ_P0026731 Stac3 protein_coding protein_coding MGP_CASTEiJ_T0026732.1 MGP_CASTEiJ_G0017146.1 mouse_genomes_project 10 130392290 130393435 + MGP_CASTEiJ_P0026732 Stac3 protein_coding protein_coding MGP_CASTEiJ_T0026733.1 MGP_CASTEiJ_G0017146.1 mouse_genomes_project 10 130392313 130399741 + MGP_CASTEiJ_P0026733 Stac3 protein_coding protein_coding MGP_CASTEiJ_T0026734.1 MGP_CASTEiJ_G0017146.1 mouse_genomes_project 10 130395091 130398414 + Stac3 protein_coding retained_intron MGP_CASTEiJ_T0026735.1 MGP_CASTEiJ_G0017146.1 mouse_genomes_project 10 130398095 130398918 + Stac3 protein_coding retained_intron MGP_CASTEiJ_T0026953.1 MGP_CASTEiJ_G0017242.1 mouse_genomes_project 10 132742379 132744514 + MGP_CASTEiJ_P0026953 Olfr800 protein_coding protein_coding MGP_CASTEiJ_T0026954.1 MGP_CASTEiJ_G0017242.1 mouse_genomes_project 10 132743578 132744514 + MGP_CASTEiJ_P0026954 Olfr800 protein_coding protein_coding MGP_CASTEiJ_T0002912.1 MGP_CASTEiJ_G0002736.1 mouse_genomes_project 10 18778617 18787802 + Gm26577 antisense antisense MGP_CASTEiJ_T0012077.1 MGP_CASTEiJ_G0010240.1 mouse_genomes_project 10 60252875 60253237 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0026386.1 MGP_CASTEiJ_G0017041.1 mouse_genomes_project 10 109901015 110072933 - MGP_CASTEiJ_P0026386 Syt1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026387.1 MGP_CASTEiJ_G0017041.1 mouse_genomes_project 10 109915485 110467993 - MGP_CASTEiJ_P0026387 Syt1 protein_coding protein_coding MGP_CASTEiJ_T0026388.1 MGP_CASTEiJ_G0017041.1 mouse_genomes_project 10 109915487 110468000 - MGP_CASTEiJ_P0026388 Syt1 protein_coding protein_coding MGP_CASTEiJ_T0026389.1 MGP_CASTEiJ_G0017041.1 mouse_genomes_project 10 110058365 110067560 - Syt1 protein_coding retained_intron MGP_CASTEiJ_T0026390.1 MGP_CASTEiJ_G0017041.1 mouse_genomes_project 10 110058421 110466121 - MGP_CASTEiJ_P0026390 Syt1 protein_coding protein_coding MGP_CASTEiJ_T0026391.1 MGP_CASTEiJ_G0017041.1 mouse_genomes_project 10 110347112 110467980 - Syt1 protein_coding retained_intron MGP_CASTEiJ_T0026392.1 MGP_CASTEiJ_G0017041.1 mouse_genomes_project 10 110347326 110466110 - Syt1 protein_coding retained_intron MGP_CASTEiJ_T0025123.1 MGP_CASTEiJ_G0016705.1 mouse_genomes_project 10 75866256 75872810 + MGP_CASTEiJ_P0025123 Vpreb3 protein_coding protein_coding MGP_CASTEiJ_T0025124.1 MGP_CASTEiJ_G0016705.1 mouse_genomes_project 10 75871472 75872830 + MGP_CASTEiJ_P0025124 Vpreb3 protein_coding protein_coding MGP_CASTEiJ_T0005920.1 MGP_CASTEiJ_G0004967.1 mouse_genomes_project 10 19383829 19386964 + Gm29323 lincRNA lincRNA MGP_CASTEiJ_T0005933.1 MGP_CASTEiJ_G0004980.1 mouse_genomes_project 10 59942258 59948968 + Gm20611 lincRNA lincRNA MGP_CASTEiJ_T0100404.1 MGP_CASTEiJ_G0037317.1 mouse_genomes_project 10 131075607 131075679 + Mir677 snoRNA snoRNA MGP_CASTEiJ_T0026941.1 MGP_CASTEiJ_G0017232.1 mouse_genomes_project 10 132519689 132529759 + MGP_CASTEiJ_P0026941 protein_coding protein_coding MGP_CASTEiJ_T0006005.1 MGP_CASTEiJ_G0005026.1 mouse_genomes_project 10 132054282 132061676 + 9030616G12Rik lincRNA lincRNA MGP_CASTEiJ_T0025966.1 MGP_CASTEiJ_G0016925.1 mouse_genomes_project 10 84831436 84938304 + MGP_CASTEiJ_P0025966 Polr3b protein_coding protein_coding MGP_CASTEiJ_T0024576.1 MGP_CASTEiJ_G0016589.1 mouse_genomes_project 10 58191588 58210866 - MGP_CASTEiJ_P0024576 Oit3 protein_coding protein_coding MGP_CASTEiJ_T0024577.1 MGP_CASTEiJ_G0016589.1 mouse_genomes_project 10 58196632 58199408 - Oit3 protein_coding retained_intron MGP_CASTEiJ_T0026900.1 MGP_CASTEiJ_G0017207.1 mouse_genomes_project 10 131872494 131884467 + MGP_CASTEiJ_P0026900 Dnajc14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0000782.1 MGP_CASTEiJ_G0000723.1 mouse_genomes_project 10 78769539 78772286 - TEC TEC MGP_CASTEiJ_T0024447.1 MGP_CASTEiJ_G0016541.1 mouse_genomes_project 10 43965156 44060662 + MGP_CASTEiJ_P0024447 Prep protein_coding protein_coding MGP_CASTEiJ_T0026213.1 MGP_CASTEiJ_G0016981.1 mouse_genomes_project 10 94190614 94229609 + MGP_CASTEiJ_P0026213 Hal protein_coding protein_coding MGP_CASTEiJ_T0026214.1 MGP_CASTEiJ_G0016981.1 mouse_genomes_project 10 94190649 94226423 + MGP_CASTEiJ_P0026214 Hal protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026215.1 MGP_CASTEiJ_G0016981.1 mouse_genomes_project 10 94199158 94205948 + Hal protein_coding retained_intron MGP_CASTEiJ_T0026216.1 MGP_CASTEiJ_G0016981.1 mouse_genomes_project 10 94206415 94226627 + Hal protein_coding processed_transcript MGP_CASTEiJ_T0002979.1 MGP_CASTEiJ_G0002788.1 mouse_genomes_project 10 100231679 100234791 - antisense antisense MGP_CASTEiJ_T0012065.1 MGP_CASTEiJ_G0010228.1 mouse_genomes_project 10 51148969 51149529 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024215.1 MGP_CASTEiJ_G0016471.1 mouse_genomes_project 10 32268376 32291882 - MGP_CASTEiJ_P0024215 Rwdd1 protein_coding protein_coding MGP_CASTEiJ_T0024216.1 MGP_CASTEiJ_G0016471.1 mouse_genomes_project 10 32268382 32274007 - Rwdd1 protein_coding retained_intron MGP_CASTEiJ_T0009350.1 MGP_CASTEiJ_G0007538.1 mouse_genomes_project 10 78589855 78589959 + Mir6410 miRNA miRNA MGP_CASTEiJ_T0010937.1 MGP_CASTEiJ_G0009125.1 mouse_genomes_project 10 23157084 23157337 - Gm26167 misc_RNA misc_RNA MGP_CASTEiJ_T0098452.1 MGP_CASTEiJ_G0035383.1 mouse_genomes_project 10 107092860 107092971 - n-R5s80 rRNA rRNA MGP_CASTEiJ_T0010945.1 MGP_CASTEiJ_G0009133.1 mouse_genomes_project 10 78521616 78521923 - Gm22514 misc_RNA misc_RNA MGP_CASTEiJ_T0012067.1 MGP_CASTEiJ_G0010230.1 mouse_genomes_project 10 55703169 55704004 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0026314.1 MGP_CASTEiJ_G0017017.1 mouse_genomes_project 10 100824376 100827443 - MGP_CASTEiJ_P0026314 Csl protein_coding unknown_likely_coding MGP_CASTEiJ_T0026315.1 MGP_CASTEiJ_G0017017.1 mouse_genomes_project 10 100824446 100827450 - MGP_CASTEiJ_P0026315 Csl protein_coding protein_coding MGP_CASTEiJ_T0025659.1 MGP_CASTEiJ_G0016851.1 mouse_genomes_project 10 81068698 81072119 - MGP_CASTEiJ_P0025659 Jsrp1 protein_coding protein_coding MGP_CASTEiJ_T0025660.1 MGP_CASTEiJ_G0016851.1 mouse_genomes_project 10 81068700 81073729 - MGP_CASTEiJ_P0025660 Jsrp1 protein_coding protein_coding MGP_CASTEiJ_T0025661.1 MGP_CASTEiJ_G0016851.1 mouse_genomes_project 10 81068703 81073732 - MGP_CASTEiJ_P0025661 Jsrp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025662.1 MGP_CASTEiJ_G0016851.1 mouse_genomes_project 10 81070408 81073735 - MGP_CASTEiJ_P0025662 Jsrp1 protein_coding protein_coding MGP_CASTEiJ_T0024654.1 MGP_CASTEiJ_G0016604.1 mouse_genomes_project 10 59651276 59728497 - MGP_CASTEiJ_P0024654 Unc5b protein_coding protein_coding MGP_CASTEiJ_T0025896.1 MGP_CASTEiJ_G0016908.1 mouse_genomes_project 10 82581033 82588209 - MGP_CASTEiJ_P0025896 Gm1553 protein_coding protein_coding MGP_CASTEiJ_T0026379.1 MGP_CASTEiJ_G0017036.1 mouse_genomes_project 10 108847852 108849705 - MGP_CASTEiJ_P0026379 Myf6 protein_coding protein_coding MGP_CASTEiJ_T0100344.1 MGP_CASTEiJ_G0037257.1 mouse_genomes_project 10 4971640 4971761 - Gm24726 snoRNA snoRNA MGP_CASTEiJ_T0024685.1 MGP_CASTEiJ_G0016615.1 mouse_genomes_project 10 60573508 60613701 + MGP_CASTEiJ_P0024685 Npffr1 protein_coding protein_coding MGP_CASTEiJ_T0012088.1 MGP_CASTEiJ_G0010251.1 mouse_genomes_project 10 81829380 81829674 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100368.1 MGP_CASTEiJ_G0037281.1 mouse_genomes_project 10 39837137 39837269 + Gm25526 snoRNA snoRNA MGP_CASTEiJ_T0099201.1 MGP_CASTEiJ_G0036114.1 mouse_genomes_project 10 110847369 110847475 - Gm23041 snRNA snRNA MGP_CASTEiJ_T0100365.1 MGP_CASTEiJ_G0037278.1 mouse_genomes_project 10 38645168 38645297 + Gm25613 snoRNA snoRNA MGP_CASTEiJ_T0026058.1 MGP_CASTEiJ_G0016953.1 mouse_genomes_project 10 88540010 88571353 + MGP_CASTEiJ_P0026058 Nup37 protein_coding protein_coding MGP_CASTEiJ_T0026059.1 MGP_CASTEiJ_G0016953.1 mouse_genomes_project 10 88540089 88571353 + MGP_CASTEiJ_P0026059 Nup37 protein_coding protein_coding MGP_CASTEiJ_T0100380.1 MGP_CASTEiJ_G0037293.1 mouse_genomes_project 10 72145750 72145883 + Gm24984 snoRNA snoRNA MGP_CASTEiJ_T0099207.1 MGP_CASTEiJ_G0036120.1 mouse_genomes_project 10 125992790 125992974 + Gm22958 snRNA snRNA MGP_CASTEiJ_T0026601.1 MGP_CASTEiJ_G0017108.1 mouse_genomes_project 10 124117428 124158464 + MGP_CASTEiJ_P0026601 D930020B18Rik protein_coding protein_coding MGP_CASTEiJ_T0026602.1 MGP_CASTEiJ_G0017108.1 mouse_genomes_project 10 124117541 124175791 + MGP_CASTEiJ_P0026602 D930020B18Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026603.1 MGP_CASTEiJ_G0017108.1 mouse_genomes_project 10 124117547 124175420 + MGP_CASTEiJ_P0026603 D930020B18Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0026604.1 MGP_CASTEiJ_G0017108.1 mouse_genomes_project 10 124117634 124175515 + MGP_CASTEiJ_P0026604 D930020B18Rik protein_coding protein_coding MGP_CASTEiJ_T0026605.1 MGP_CASTEiJ_G0017108.1 mouse_genomes_project 10 124117712 124175515 + MGP_CASTEiJ_P0026605 D930020B18Rik protein_coding protein_coding MGP_CASTEiJ_T0025065.1 MGP_CASTEiJ_G0016688.1 mouse_genomes_project 10 75407894 75428960 + MGP_CASTEiJ_P0025065 Snrpd3 protein_coding protein_coding MGP_CASTEiJ_T0025066.1 MGP_CASTEiJ_G0016688.1 mouse_genomes_project 10 75408357 75410215 + Snrpd3 protein_coding retained_intron MGP_CASTEiJ_T0099187.1 MGP_CASTEiJ_G0036100.1 mouse_genomes_project 10 83366781 83366884 - Gm23122 snRNA snRNA MGP_CASTEiJ_T0026382.1 MGP_CASTEiJ_G0017039.1 mouse_genomes_project 10 109554803 109667559 + MGP_CASTEiJ_P0026382 Ppp1r12a protein_coding unknown_likely_coding MGP_CASTEiJ_T0026383.1 MGP_CASTEiJ_G0017039.1 mouse_genomes_project 10 109554860 109675302 + MGP_CASTEiJ_P0026383 Ppp1r12a protein_coding unknown_likely_coding MGP_CASTEiJ_T0026384.1 MGP_CASTEiJ_G0017039.1 mouse_genomes_project 10 109554860 109675584 + MGP_CASTEiJ_P0026384 Ppp1r12a protein_coding protein_coding MGP_CASTEiJ_T0002942.1 MGP_CASTEiJ_G0002759.1 mouse_genomes_project 10 75859031 75863827 - antisense antisense MGP_CASTEiJ_T0002929.1 MGP_CASTEiJ_G0002749.1 mouse_genomes_project 10 58596639 58597599 - Gm17059 antisense antisense MGP_CASTEiJ_T0101974.1 MGP_CASTEiJ_G0038699.1 mouse_genomes_project 10 132930829 132931654 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0012094.1 MGP_CASTEiJ_G0010257.1 mouse_genomes_project 10 103631302 103632228 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0025555.1 MGP_CASTEiJ_G0016823.1 mouse_genomes_project 10 80490937 80497570 + MGP_CASTEiJ_P0025555 Rps15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025556.1 MGP_CASTEiJ_G0016823.1 mouse_genomes_project 10 80491101 80497353 + MGP_CASTEiJ_P0025556 Rps15 protein_coding protein_coding MGP_CASTEiJ_T0024601.1 MGP_CASTEiJ_G0016594.1 mouse_genomes_project 10 58755901 58757988 - MGP_CASTEiJ_P0024601 Ddit4 protein_coding protein_coding MGP_CASTEiJ_T0100397.1 MGP_CASTEiJ_G0037310.1 mouse_genomes_project 10 113081603 113081747 + Gm25117 snoRNA snoRNA MGP_CASTEiJ_T0025754.1 MGP_CASTEiJ_G0016879.1 mouse_genomes_project 10 81596093 81624893 + MGP_CASTEiJ_P0025754 Pip5k1c protein_coding protein_coding MGP_CASTEiJ_T0025755.1 MGP_CASTEiJ_G0016879.1 mouse_genomes_project 10 81596110 81623175 + MGP_CASTEiJ_P0025755 Pip5k1c protein_coding protein_coding MGP_CASTEiJ_T0025756.1 MGP_CASTEiJ_G0016879.1 mouse_genomes_project 10 81596118 81613993 + MGP_CASTEiJ_P0025756 Pip5k1c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025757.1 MGP_CASTEiJ_G0016879.1 mouse_genomes_project 10 81596134 81624893 + MGP_CASTEiJ_P0025757 Pip5k1c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025758.1 MGP_CASTEiJ_G0016879.1 mouse_genomes_project 10 81596135 81624894 + MGP_CASTEiJ_P0025758 Pip5k1c protein_coding protein_coding MGP_CASTEiJ_T0025759.1 MGP_CASTEiJ_G0016879.1 mouse_genomes_project 10 81615550 81618300 + MGP_CASTEiJ_P0025759 Pip5k1c protein_coding protein_coding MGP_CASTEiJ_T0025760.1 MGP_CASTEiJ_G0016879.1 mouse_genomes_project 10 81618222 81623066 + MGP_CASTEiJ_P0025760 Pip5k1c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025761.1 MGP_CASTEiJ_G0016879.1 mouse_genomes_project 10 81618357 81622941 + MGP_CASTEiJ_P0025761 Pip5k1c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025762.1 MGP_CASTEiJ_G0016879.1 mouse_genomes_project 10 81618847 81620721 + Pip5k1c protein_coding retained_intron MGP_CASTEiJ_T0025763.1 MGP_CASTEiJ_G0016879.1 mouse_genomes_project 10 81621762 81622934 + Pip5k1c protein_coding retained_intron MGP_CASTEiJ_T0025586.1 MGP_CASTEiJ_G0016830.1 mouse_genomes_project 10 80595683 80603114 - MGP_CASTEiJ_P0025586 Mex3d protein_coding protein_coding MGP_CASTEiJ_T0025587.1 MGP_CASTEiJ_G0016830.1 mouse_genomes_project 10 80595685 80603106 - MGP_CASTEiJ_P0025587 Mex3d protein_coding protein_coding MGP_CASTEiJ_T0025588.1 MGP_CASTEiJ_G0016830.1 mouse_genomes_project 10 80595782 80597316 - MGP_CASTEiJ_P0025588 Mex3d protein_coding protein_coding MGP_CASTEiJ_T0023985.1 MGP_CASTEiJ_G0016385.1 mouse_genomes_project 10 16317119 16329398 + MGP_CASTEiJ_P0023985 Perp protein_coding protein_coding MGP_CASTEiJ_T0026207.1 MGP_CASTEiJ_G0016979.1 mouse_genomes_project 10 93839505 93926964 + MGP_CASTEiJ_P0026207 Cdk17 protein_coding protein_coding MGP_CASTEiJ_T0025217.1 MGP_CASTEiJ_G0016730.1 mouse_genomes_project 10 77652280 77669361 + MGP_CASTEiJ_P0025217 Pttg1ip protein_coding protein_coding MGP_CASTEiJ_T0025218.1 MGP_CASTEiJ_G0016730.1 mouse_genomes_project 10 77652316 77657864 + Pttg1ip protein_coding retained_intron MGP_CASTEiJ_T0025219.1 MGP_CASTEiJ_G0016730.1 mouse_genomes_project 10 77652318 77664516 + MGP_CASTEiJ_P0025219 Pttg1ip protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025220.1 MGP_CASTEiJ_G0016730.1 mouse_genomes_project 10 77652363 77667959 + MGP_CASTEiJ_P0025220 Pttg1ip protein_coding protein_coding MGP_CASTEiJ_T0025221.1 MGP_CASTEiJ_G0016730.1 mouse_genomes_project 10 77652382 77663534 + MGP_CASTEiJ_P0025221 Pttg1ip protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025222.1 MGP_CASTEiJ_G0016730.1 mouse_genomes_project 10 77652969 77667893 + MGP_CASTEiJ_P0025222 Pttg1ip protein_coding protein_coding MGP_CASTEiJ_T0025223.1 MGP_CASTEiJ_G0016730.1 mouse_genomes_project 10 77654507 77663622 + MGP_CASTEiJ_P0025223 Pttg1ip protein_coding protein_coding MGP_CASTEiJ_T0025224.1 MGP_CASTEiJ_G0016730.1 mouse_genomes_project 10 77659829 77667856 + Pttg1ip protein_coding retained_intron MGP_CASTEiJ_T0025225.1 MGP_CASTEiJ_G0016730.1 mouse_genomes_project 10 77662959 77667754 + Pttg1ip protein_coding retained_intron MGP_CASTEiJ_T0026224.1 MGP_CASTEiJ_G0016984.1 mouse_genomes_project 10 94297422 94303446 - MGP_CASTEiJ_P0026224 Snrpf protein_coding unknown_likely_coding MGP_CASTEiJ_T0024472.1 MGP_CASTEiJ_G0016550.1 mouse_genomes_project 10 50598214 50614976 - MGP_CASTEiJ_P0024472 Gprc6a protein_coding protein_coding MGP_CASTEiJ_T0024943.1 MGP_CASTEiJ_G0016667.1 mouse_genomes_project 10 69614593 69718647 + MGP_CASTEiJ_P0024943 Ccdc6 protein_coding protein_coding MGP_CASTEiJ_T0024944.1 MGP_CASTEiJ_G0016667.1 mouse_genomes_project 10 69698314 69707618 + Ccdc6 protein_coding retained_intron MGP_CASTEiJ_T0024945.1 MGP_CASTEiJ_G0016667.1 mouse_genomes_project 10 69698816 69713623 + MGP_CASTEiJ_P0024945 Ccdc6 protein_coding protein_coding MGP_CASTEiJ_T0024946.1 MGP_CASTEiJ_G0016667.1 mouse_genomes_project 10 69698852 69713636 + MGP_CASTEiJ_P0024946 Ccdc6 protein_coding protein_coding MGP_CASTEiJ_T0025563.1 MGP_CASTEiJ_G0016825.1 mouse_genomes_project 10 80523047 80525340 - MGP_CASTEiJ_P0025563 2310011J03Rik protein_coding protein_coding MGP_CASTEiJ_T0098735.1 MGP_CASTEiJ_G0035666.1 mouse_genomes_project 10 131460841 131460972 + Gm26347 scaRNA scaRNA MGP_CASTEiJ_T0100405.1 MGP_CASTEiJ_G0037318.1 mouse_genomes_project 10 131366804 131366939 + Gm23182 snoRNA snoRNA MGP_CASTEiJ_T0024348.1 MGP_CASTEiJ_G0016516.1 mouse_genomes_project 10 40169203 40183219 - protein_coding processed_transcript MGP_CASTEiJ_T0024349.1 MGP_CASTEiJ_G0016516.1 mouse_genomes_project 10 40169206 40240377 - MGP_CASTEiJ_P0024349 protein_coding protein_coding MGP_CASTEiJ_T0024350.1 MGP_CASTEiJ_G0016516.1 mouse_genomes_project 10 40169206 40220331 - MGP_CASTEiJ_P0024350 protein_coding protein_coding MGP_CASTEiJ_T0024351.1 MGP_CASTEiJ_G0016516.1 mouse_genomes_project 10 40169658 40368819 - MGP_CASTEiJ_P0024351 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024352.1 MGP_CASTEiJ_G0016516.1 mouse_genomes_project 10 40169763 40210987 - MGP_CASTEiJ_P0024352 protein_coding protein_coding MGP_CASTEiJ_T0024353.1 MGP_CASTEiJ_G0016516.1 mouse_genomes_project 10 40179294 40192490 - protein_coding retained_intron MGP_CASTEiJ_T0024354.1 MGP_CASTEiJ_G0016516.1 mouse_genomes_project 10 40180970 40368172 - MGP_CASTEiJ_P0024354 protein_coding protein_coding MGP_CASTEiJ_T0024355.1 MGP_CASTEiJ_G0016516.1 mouse_genomes_project 10 40181089 40185206 - protein_coding retained_intron MGP_CASTEiJ_T0024356.1 MGP_CASTEiJ_G0016516.1 mouse_genomes_project 10 40212004 40220627 - protein_coding processed_transcript MGP_CASTEiJ_T0026477.1 MGP_CASTEiJ_G0017072.1 mouse_genomes_project 10 118512310 118618200 - MGP_CASTEiJ_P0026477 Cnot2 protein_coding protein_coding MGP_CASTEiJ_T0026478.1 MGP_CASTEiJ_G0017072.1 mouse_genomes_project 10 118512314 118618185 - MGP_CASTEiJ_P0026478 Cnot2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026479.1 MGP_CASTEiJ_G0017072.1 mouse_genomes_project 10 118512314 118581498 - MGP_CASTEiJ_P0026479 Cnot2 protein_coding protein_coding MGP_CASTEiJ_T0026480.1 MGP_CASTEiJ_G0017072.1 mouse_genomes_project 10 118512315 118618189 - MGP_CASTEiJ_P0026480 Cnot2 protein_coding protein_coding MGP_CASTEiJ_T0026481.1 MGP_CASTEiJ_G0017072.1 mouse_genomes_project 10 118512936 118618200 - MGP_CASTEiJ_P0026481 Cnot2 protein_coding protein_coding MGP_CASTEiJ_T0026482.1 MGP_CASTEiJ_G0017072.1 mouse_genomes_project 10 118513346 118618191 - MGP_CASTEiJ_P0026482 Cnot2 protein_coding protein_coding MGP_CASTEiJ_T0026483.1 MGP_CASTEiJ_G0017072.1 mouse_genomes_project 10 118513349 118568039 - MGP_CASTEiJ_P0026483 Cnot2 protein_coding protein_coding MGP_CASTEiJ_T0026484.1 MGP_CASTEiJ_G0017072.1 mouse_genomes_project 10 118526345 118618172 - Cnot2 protein_coding processed_transcript MGP_CASTEiJ_T0026485.1 MGP_CASTEiJ_G0017072.1 mouse_genomes_project 10 118526595 118618182 - Cnot2 protein_coding processed_transcript MGP_CASTEiJ_T0026486.1 MGP_CASTEiJ_G0017072.1 mouse_genomes_project 10 118527627 118618179 - Cnot2 protein_coding processed_transcript MGP_CASTEiJ_T0026487.1 MGP_CASTEiJ_G0017072.1 mouse_genomes_project 10 118527632 118618174 - Cnot2 protein_coding processed_transcript MGP_CASTEiJ_T0026488.1 MGP_CASTEiJ_G0017072.1 mouse_genomes_project 10 118533647 118618154 - MGP_CASTEiJ_P0026488 Cnot2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026489.1 MGP_CASTEiJ_G0017072.1 mouse_genomes_project 10 118535988 118618180 - Cnot2 protein_coding processed_transcript MGP_CASTEiJ_T0026490.1 MGP_CASTEiJ_G0017072.1 mouse_genomes_project 10 118539396 118618185 - Cnot2 protein_coding processed_transcript MGP_CASTEiJ_T0026491.1 MGP_CASTEiJ_G0017072.1 mouse_genomes_project 10 118539396 118618200 - MGP_CASTEiJ_P0026491 Cnot2 protein_coding protein_coding MGP_CASTEiJ_T0026492.1 MGP_CASTEiJ_G0017072.1 mouse_genomes_project 10 118539765 118618172 - Cnot2 protein_coding processed_transcript MGP_CASTEiJ_T0025940.1 MGP_CASTEiJ_G0016919.1 mouse_genomes_project 10 83726671 83782164 + MGP_CASTEiJ_P0025940 A230046K03Rik protein_coding protein_coding MGP_CASTEiJ_T0025941.1 MGP_CASTEiJ_G0016919.1 mouse_genomes_project 10 83726726 83774545 + MGP_CASTEiJ_P0025941 A230046K03Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0025942.1 MGP_CASTEiJ_G0016919.1 mouse_genomes_project 10 83726772 83782174 + MGP_CASTEiJ_P0025942 A230046K03Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0009369.1 MGP_CASTEiJ_G0007557.1 mouse_genomes_project 10 92760887 92760971 - Mir1251 miRNA miRNA MGP_CASTEiJ_T0025364.1 MGP_CASTEiJ_G0016781.1 mouse_genomes_project 10 79805867 79814945 + MGP_CASTEiJ_P0025364 Tpgs1 protein_coding protein_coding MGP_CASTEiJ_T0026819.1 MGP_CASTEiJ_G0017176.1 mouse_genomes_project 10 131240338 131266461 + MGP_CASTEiJ_P0026819 Timeless protein_coding protein_coding MGP_CASTEiJ_T0026820.1 MGP_CASTEiJ_G0017176.1 mouse_genomes_project 10 131240353 131266453 + Timeless protein_coding retained_intron MGP_CASTEiJ_T0026821.1 MGP_CASTEiJ_G0017176.1 mouse_genomes_project 10 131240362 131266371 + MGP_CASTEiJ_P0026821 Timeless protein_coding protein_coding MGP_CASTEiJ_T0026822.1 MGP_CASTEiJ_G0017176.1 mouse_genomes_project 10 131240364 131259378 + MGP_CASTEiJ_P0026822 Timeless protein_coding protein_coding MGP_CASTEiJ_T0026823.1 MGP_CASTEiJ_G0017176.1 mouse_genomes_project 10 131240388 131253420 + MGP_CASTEiJ_P0026823 Timeless protein_coding protein_coding MGP_CASTEiJ_T0026824.1 MGP_CASTEiJ_G0017176.1 mouse_genomes_project 10 131240407 131266461 + MGP_CASTEiJ_P0026824 Timeless protein_coding protein_coding MGP_CASTEiJ_T0026825.1 MGP_CASTEiJ_G0017176.1 mouse_genomes_project 10 131249807 131266461 + MGP_CASTEiJ_P0026825 Timeless protein_coding protein_coding MGP_CASTEiJ_T0026826.1 MGP_CASTEiJ_G0017176.1 mouse_genomes_project 10 131252146 131253360 + Timeless protein_coding retained_intron MGP_CASTEiJ_T0026827.1 MGP_CASTEiJ_G0017176.1 mouse_genomes_project 10 131254078 131254750 + Timeless protein_coding retained_intron MGP_CASTEiJ_T0026828.1 MGP_CASTEiJ_G0017176.1 mouse_genomes_project 10 131254368 131255434 + Timeless protein_coding retained_intron MGP_CASTEiJ_T0026829.1 MGP_CASTEiJ_G0017176.1 mouse_genomes_project 10 131260557 131261331 + Timeless protein_coding retained_intron MGP_CASTEiJ_T0026830.1 MGP_CASTEiJ_G0017176.1 mouse_genomes_project 10 131260612 131266459 + Timeless protein_coding processed_transcript MGP_CASTEiJ_T0026831.1 MGP_CASTEiJ_G0017176.1 mouse_genomes_project 10 131262729 131263377 + Timeless protein_coding retained_intron MGP_CASTEiJ_T0026832.1 MGP_CASTEiJ_G0017176.1 mouse_genomes_project 10 131263135 131263889 + Timeless protein_coding retained_intron MGP_CASTEiJ_T0099174.1 MGP_CASTEiJ_G0036087.1 mouse_genomes_project 10 51851342 51851449 + Gm25664 snRNA snRNA MGP_CASTEiJ_T0099155.1 MGP_CASTEiJ_G0036068.1 mouse_genomes_project 10 7319224 7319389 + Gm25682 snRNA snRNA MGP_CASTEiJ_T0026206.1 MGP_CASTEiJ_G0016978.1 mouse_genomes_project 10 93836658 94002053 - MGP_CASTEiJ_P0026206 Elk3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026208.1 MGP_CASTEiJ_G0016978.1 mouse_genomes_project 10 93935584 94002896 - MGP_CASTEiJ_P0026208 Elk3 protein_coding protein_coding MGP_CASTEiJ_T0026209.1 MGP_CASTEiJ_G0016978.1 mouse_genomes_project 10 93937501 94002567 - MGP_CASTEiJ_P0026209 Elk3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026210.1 MGP_CASTEiJ_G0016978.1 mouse_genomes_project 10 93937501 94002730 - MGP_CASTEiJ_P0026210 Elk3 protein_coding protein_coding MGP_CASTEiJ_T0026211.1 MGP_CASTEiJ_G0016978.1 mouse_genomes_project 10 93974586 94002896 - Elk3 protein_coding retained_intron MGP_CASTEiJ_T0025313.1 MGP_CASTEiJ_G0016757.1 mouse_genomes_project 10 78639548 78644934 - MGP_CASTEiJ_P0025313 Gm9978 protein_coding protein_coding MGP_CASTEiJ_T0098448.1 MGP_CASTEiJ_G0035379.1 mouse_genomes_project 10 43545692 43545803 + Gm27977 rRNA rRNA MGP_CASTEiJ_T0024310.1 MGP_CASTEiJ_G0016505.1 mouse_genomes_project 10 39271717 39411537 + MGP_CASTEiJ_P0024310 Mettl24 protein_coding protein_coding MGP_CASTEiJ_T0026709.1 MGP_CASTEiJ_G0017143.1 mouse_genomes_project 10 130222151 130224502 - MGP_CASTEiJ_P0026709 Inhbe protein_coding protein_coding MGP_CASTEiJ_T0026964.1 MGP_CASTEiJ_G0017250.1 mouse_genomes_project 10 132912401 132913406 - MGP_CASTEiJ_P0026964 Olfr810 protein_coding protein_coding MGP_CASTEiJ_T0002956.1 MGP_CASTEiJ_G0002771.1 mouse_genomes_project 10 81492414 81496242 + Atcayos antisense antisense MGP_CASTEiJ_T0002957.1 MGP_CASTEiJ_G0002771.1 mouse_genomes_project 10 81492488 81507082 + Atcayos antisense antisense MGP_CASTEiJ_T0002958.1 MGP_CASTEiJ_G0002771.1 mouse_genomes_project 10 81492496 81508801 + Atcayos antisense antisense MGP_CASTEiJ_T0026647.1 MGP_CASTEiJ_G0017122.1 mouse_genomes_project 10 129849871 129869777 - MGP_CASTEiJ_P0026647 Tsfm protein_coding protein_coding MGP_CASTEiJ_T0026648.1 MGP_CASTEiJ_G0017122.1 mouse_genomes_project 10 129861415 129869814 - MGP_CASTEiJ_P0026648 Tsfm protein_coding protein_coding MGP_CASTEiJ_T0026649.1 MGP_CASTEiJ_G0017122.1 mouse_genomes_project 10 129861525 129864175 - Tsfm protein_coding retained_intron MGP_CASTEiJ_T0026650.1 MGP_CASTEiJ_G0017122.1 mouse_genomes_project 10 129861703 129869365 - Tsfm protein_coding processed_transcript MGP_CASTEiJ_T0026651.1 MGP_CASTEiJ_G0017122.1 mouse_genomes_project 10 129861985 129869733 - Tsfm protein_coding retained_intron MGP_CASTEiJ_T0026652.1 MGP_CASTEiJ_G0017122.1 mouse_genomes_project 10 129863312 129869773 - MGP_CASTEiJ_P0026652 Tsfm protein_coding protein_coding MGP_CASTEiJ_T0026653.1 MGP_CASTEiJ_G0017122.1 mouse_genomes_project 10 129868216 129869777 - Tsfm protein_coding retained_intron MGP_CASTEiJ_T0100346.1 MGP_CASTEiJ_G0037259.1 mouse_genomes_project 10 7066553 7066684 - Gm25635 snoRNA snoRNA MGP_CASTEiJ_T0000789.1 MGP_CASTEiJ_G0000729.1 mouse_genomes_project 10 106380433 106381141 - TEC TEC MGP_CASTEiJ_T0023955.1 MGP_CASTEiJ_G0016376.1 mouse_genomes_project 10 15320209 15369984 - MGP_CASTEiJ_P0023955 Heca protein_coding protein_coding MGP_CASTEiJ_T0005912.1 MGP_CASTEiJ_G0004962.1 mouse_genomes_project 10 11274566 11315504 - Gm26835 lincRNA lincRNA MGP_CASTEiJ_T0025926.1 MGP_CASTEiJ_G0016915.1 mouse_genomes_project 10 83165995 83406284 + MGP_CASTEiJ_P0025926 Chst11 protein_coding protein_coding MGP_CASTEiJ_T0025927.1 MGP_CASTEiJ_G0016915.1 mouse_genomes_project 10 83252886 83402517 + MGP_CASTEiJ_P0025927 Chst11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024233.1 MGP_CASTEiJ_G0016482.1 mouse_genomes_project 10 34921673 35267674 + MGP_CASTEiJ_P0024233 Hs3st5 protein_coding protein_coding MGP_CASTEiJ_T0024234.1 MGP_CASTEiJ_G0016482.1 mouse_genomes_project 10 34921678 35268290 + MGP_CASTEiJ_P0024234 Hs3st5 protein_coding protein_coding MGP_CASTEiJ_T0024235.1 MGP_CASTEiJ_G0016482.1 mouse_genomes_project 10 34921748 35124725 + Hs3st5 protein_coding retained_intron MGP_CASTEiJ_T0024236.1 MGP_CASTEiJ_G0016482.1 mouse_genomes_project 10 34921885 35268298 + MGP_CASTEiJ_P0024236 Hs3st5 protein_coding protein_coding MGP_CASTEiJ_T0024237.1 MGP_CASTEiJ_G0016482.1 mouse_genomes_project 10 34922266 35245693 + Hs3st5 protein_coding processed_transcript MGP_CASTEiJ_T0009353.1 MGP_CASTEiJ_G0007541.1 mouse_genomes_project 10 79663167 79663229 - Mir6909 miRNA miRNA MGP_CASTEiJ_T0000790.1 MGP_CASTEiJ_G0000730.1 mouse_genomes_project 10 108780313 108782018 - TEC TEC MGP_CASTEiJ_T0024879.1 MGP_CASTEiJ_G0016664.1 mouse_genomes_project 10 68645570 68648937 - MGP_CASTEiJ_P0024879 A930033H14Rik protein_coding protein_coding MGP_CASTEiJ_T0024028.1 MGP_CASTEiJ_G0016399.1 mouse_genomes_project 10 17961234 18315283 - MGP_CASTEiJ_P0024028 Pde7b protein_coding protein_coding MGP_CASTEiJ_T0024029.1 MGP_CASTEiJ_G0016399.1 mouse_genomes_project 10 17962158 18128924 - MGP_CASTEiJ_P0024029 Pde7b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024030.1 MGP_CASTEiJ_G0016399.1 mouse_genomes_project 10 17963648 18314904 - MGP_CASTEiJ_P0024030 Pde7b protein_coding protein_coding MGP_CASTEiJ_T0024031.1 MGP_CASTEiJ_G0016399.1 mouse_genomes_project 10 17963648 18128924 - MGP_CASTEiJ_P0024031 Pde7b protein_coding protein_coding MGP_CASTEiJ_T0024032.1 MGP_CASTEiJ_G0016399.1 mouse_genomes_project 10 17971537 18129066 - MGP_CASTEiJ_P0024032 Pde7b protein_coding protein_coding MGP_CASTEiJ_T0024033.1 MGP_CASTEiJ_G0016399.1 mouse_genomes_project 10 18051845 18315237 - Pde7b protein_coding retained_intron MGP_CASTEiJ_T0024034.1 MGP_CASTEiJ_G0016399.1 mouse_genomes_project 10 18203804 18315237 - Pde7b protein_coding retained_intron MGP_CASTEiJ_T0005989.1 MGP_CASTEiJ_G0005014.1 mouse_genomes_project 10 113110166 113111272 - Gm28592 lincRNA lincRNA MGP_CASTEiJ_T0100345.1 MGP_CASTEiJ_G0037258.1 mouse_genomes_project 10 5943989 5944126 - Gm25410 snoRNA snoRNA MGP_CASTEiJ_T0025891.1 MGP_CASTEiJ_G0016905.1 mouse_genomes_project 10 82188118 82215115 + MGP_CASTEiJ_P0025891 AU041133 protein_coding protein_coding MGP_CASTEiJ_T0025892.1 MGP_CASTEiJ_G0016905.1 mouse_genomes_project 10 82198365 82214061 + MGP_CASTEiJ_P0025892 AU041133 protein_coding protein_coding MGP_CASTEiJ_T0024569.1 MGP_CASTEiJ_G0016585.1 mouse_genomes_project 10 57915662 57978148 - MGP_CASTEiJ_P0024569 Sept10 protein_coding protein_coding MGP_CASTEiJ_T0009381.1 MGP_CASTEiJ_G0007569.1 mouse_genomes_project 10 110806124 110806213 - Gm44495 miRNA miRNA MGP_CASTEiJ_T0024380.1 MGP_CASTEiJ_G0016522.1 mouse_genomes_project 10 40857311 40954973 - MGP_CASTEiJ_P0024380 Foxo3 protein_coding protein_coding MGP_CASTEiJ_T0024381.1 MGP_CASTEiJ_G0016522.1 mouse_genomes_project 10 40861254 40954963 - MGP_CASTEiJ_P0024381 Foxo3 protein_coding protein_coding MGP_CASTEiJ_T0024382.1 MGP_CASTEiJ_G0016522.1 mouse_genomes_project 10 40871774 40954917 - MGP_CASTEiJ_P0024382 Foxo3 protein_coding protein_coding MGP_CASTEiJ_T0024383.1 MGP_CASTEiJ_G0016522.1 mouse_genomes_project 10 40873050 40936546 - MGP_CASTEiJ_P0024383 Foxo3 protein_coding protein_coding MGP_CASTEiJ_T0024384.1 MGP_CASTEiJ_G0016522.1 mouse_genomes_project 10 40920822 40954976 - MGP_CASTEiJ_P0024384 Foxo3 protein_coding protein_coding MGP_CASTEiJ_T0026583.1 MGP_CASTEiJ_G0017099.1 mouse_genomes_project 10 123147848 123163535 + MGP_CASTEiJ_P0026583 4921513I03Rik protein_coding protein_coding MGP_CASTEiJ_T0025299.1 MGP_CASTEiJ_G0016753.1 mouse_genomes_project 10 78413190 78502270 - MGP_CASTEiJ_P0025299 Agpat3 protein_coding protein_coding MGP_CASTEiJ_T0025300.1 MGP_CASTEiJ_G0016753.1 mouse_genomes_project 10 78415579 78501693 - MGP_CASTEiJ_P0025300 Agpat3 protein_coding protein_coding MGP_CASTEiJ_T0025301.1 MGP_CASTEiJ_G0016753.1 mouse_genomes_project 10 78415579 78443582 - MGP_CASTEiJ_P0025301 Agpat3 protein_coding protein_coding MGP_CASTEiJ_T0025302.1 MGP_CASTEiJ_G0016753.1 mouse_genomes_project 10 78415579 78501881 - MGP_CASTEiJ_P0025302 Agpat3 protein_coding protein_coding MGP_CASTEiJ_T0025303.1 MGP_CASTEiJ_G0016753.1 mouse_genomes_project 10 78415579 78501514 - MGP_CASTEiJ_P0025303 Agpat3 protein_coding protein_coding MGP_CASTEiJ_T0025304.1 MGP_CASTEiJ_G0016753.1 mouse_genomes_project 10 78417624 78440768 - MGP_CASTEiJ_P0025304 Agpat3 protein_coding protein_coding MGP_CASTEiJ_T0025305.1 MGP_CASTEiJ_G0016753.1 mouse_genomes_project 10 78417627 78422484 - Agpat3 protein_coding retained_intron MGP_CASTEiJ_T0025306.1 MGP_CASTEiJ_G0016753.1 mouse_genomes_project 10 78428296 78466017 - MGP_CASTEiJ_P0025306 Agpat3 protein_coding protein_coding MGP_CASTEiJ_T0025307.1 MGP_CASTEiJ_G0016753.1 mouse_genomes_project 10 78428342 78452939 - MGP_CASTEiJ_P0025307 Agpat3 protein_coding protein_coding MGP_CASTEiJ_T0025308.1 MGP_CASTEiJ_G0016753.1 mouse_genomes_project 10 78431895 78502317 - MGP_CASTEiJ_P0025308 Agpat3 protein_coding protein_coding MGP_CASTEiJ_T0025309.1 MGP_CASTEiJ_G0016753.1 mouse_genomes_project 10 78431906 78502040 - MGP_CASTEiJ_P0025309 Agpat3 protein_coding protein_coding MGP_CASTEiJ_T0026749.1 MGP_CASTEiJ_G0017151.1 mouse_genomes_project 10 130548408 130570988 + MGP_CASTEiJ_P0026749 Stat6 protein_coding protein_coding MGP_CASTEiJ_T0026750.1 MGP_CASTEiJ_G0017151.1 mouse_genomes_project 10 130548424 130556238 + MGP_CASTEiJ_P0026750 Stat6 protein_coding protein_coding MGP_CASTEiJ_T0026751.1 MGP_CASTEiJ_G0017151.1 mouse_genomes_project 10 130552339 130570989 + MGP_CASTEiJ_P0026751 Stat6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026752.1 MGP_CASTEiJ_G0017151.1 mouse_genomes_project 10 130558542 130561879 + Stat6 protein_coding retained_intron MGP_CASTEiJ_T0026753.1 MGP_CASTEiJ_G0017151.1 mouse_genomes_project 10 130566898 130568089 + Stat6 protein_coding retained_intron MGP_CASTEiJ_T0026754.1 MGP_CASTEiJ_G0017151.1 mouse_genomes_project 10 130569430 130570218 + Stat6 protein_coding retained_intron MGP_CASTEiJ_T0026401.1 MGP_CASTEiJ_G0017043.1 mouse_genomes_project 10 112297123 112340668 + MGP_CASTEiJ_P0026401 E2f7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026402.1 MGP_CASTEiJ_G0017043.1 mouse_genomes_project 10 112297330 112301438 + E2f7 protein_coding processed_transcript MGP_CASTEiJ_T0026403.1 MGP_CASTEiJ_G0017043.1 mouse_genomes_project 10 112297356 112309871 + MGP_CASTEiJ_P0026403 E2f7 protein_coding protein_coding MGP_CASTEiJ_T0026404.1 MGP_CASTEiJ_G0017043.1 mouse_genomes_project 10 112297359 112321548 + E2f7 protein_coding retained_intron MGP_CASTEiJ_T0026405.1 MGP_CASTEiJ_G0017043.1 mouse_genomes_project 10 112297359 112337427 + MGP_CASTEiJ_P0026405 E2f7 protein_coding protein_coding MGP_CASTEiJ_T0026406.1 MGP_CASTEiJ_G0017043.1 mouse_genomes_project 10 112297404 112335553 + MGP_CASTEiJ_P0026406 E2f7 protein_coding protein_coding MGP_CASTEiJ_T0026407.1 MGP_CASTEiJ_G0017043.1 mouse_genomes_project 10 112297463 112307810 + MGP_CASTEiJ_P0026407 E2f7 protein_coding protein_coding MGP_CASTEiJ_T0026408.1 MGP_CASTEiJ_G0017043.1 mouse_genomes_project 10 112307496 112309481 + E2f7 protein_coding processed_transcript MGP_CASTEiJ_T0026409.1 MGP_CASTEiJ_G0017043.1 mouse_genomes_project 10 112307566 112325213 + MGP_CASTEiJ_P0026409 E2f7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026410.1 MGP_CASTEiJ_G0017043.1 mouse_genomes_project 10 112317250 112319153 + E2f7 protein_coding retained_intron MGP_CASTEiJ_T0009365.1 MGP_CASTEiJ_G0007553.1 mouse_genomes_project 10 85522181 85522282 - Gm27392 miRNA miRNA MGP_CASTEiJ_T0026302.1 MGP_CASTEiJ_G0017011.1 mouse_genomes_project 10 100009882 100065955 + MGP_CASTEiJ_P0026302 Atp2b1 protein_coding protein_coding MGP_CASTEiJ_T0026303.1 MGP_CASTEiJ_G0017011.1 mouse_genomes_project 10 100009913 100070376 + MGP_CASTEiJ_P0026303 Atp2b1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025654.1 MGP_CASTEiJ_G0016849.1 mouse_genomes_project 10 81057350 81063634 + MGP_CASTEiJ_P0025654 Sf3a2 protein_coding protein_coding MGP_CASTEiJ_T0025655.1 MGP_CASTEiJ_G0016849.1 mouse_genomes_project 10 81057884 81062717 + MGP_CASTEiJ_P0025655 Sf3a2 protein_coding protein_coding MGP_CASTEiJ_T0025656.1 MGP_CASTEiJ_G0016849.1 mouse_genomes_project 10 81058124 81061087 + MGP_CASTEiJ_P0025656 Sf3a2 protein_coding protein_coding MGP_CASTEiJ_T0025657.1 MGP_CASTEiJ_G0016849.1 mouse_genomes_project 10 81061185 81062727 + Sf3a2 protein_coding retained_intron MGP_CASTEiJ_T0009394.1 MGP_CASTEiJ_G0007582.1 mouse_genomes_project 10 131401249 131401318 - Gm26308 miRNA miRNA MGP_CASTEiJ_T0024086.1 MGP_CASTEiJ_G0016421.1 mouse_genomes_project 10 21711940 21712954 + MGP_CASTEiJ_P0024086 Taar5 protein_coding protein_coding MGP_CASTEiJ_T0010948.1 MGP_CASTEiJ_G0009136.1 mouse_genomes_project 10 92695749 92695911 - Gm27608 misc_RNA misc_RNA MGP_CASTEiJ_T0012081.1 MGP_CASTEiJ_G0010244.1 mouse_genomes_project 10 71567603 71568408 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0025146.1 MGP_CASTEiJ_G0016712.1 mouse_genomes_project 10 76321610 76421458 - MGP_CASTEiJ_P0025146 Pcnt protein_coding protein_coding MGP_CASTEiJ_T0025147.1 MGP_CASTEiJ_G0016712.1 mouse_genomes_project 10 76321614 76421164 - MGP_CASTEiJ_P0025147 Pcnt protein_coding unknown_likely_coding MGP_CASTEiJ_T0026791.1 MGP_CASTEiJ_G0017169.1 mouse_genomes_project 10 131048459 131067598 + MGP_CASTEiJ_P0026791 Ptges3 protein_coding protein_coding MGP_CASTEiJ_T0026792.1 MGP_CASTEiJ_G0017169.1 mouse_genomes_project 10 131048516 131067072 + MGP_CASTEiJ_P0026792 Ptges3 protein_coding protein_coding MGP_CASTEiJ_T0026793.1 MGP_CASTEiJ_G0017169.1 mouse_genomes_project 10 131058922 131062219 + Ptges3 protein_coding retained_intron MGP_CASTEiJ_T0024560.1 MGP_CASTEiJ_G0016580.1 mouse_genomes_project 10 57238411 57314936 + MGP_CASTEiJ_P0024560 Ccdc138 protein_coding protein_coding MGP_CASTEiJ_T0026125.1 MGP_CASTEiJ_G0016968.1 mouse_genomes_project 10 90146626 90199512 - MGP_CASTEiJ_P0026125 Scyl2 protein_coding protein_coding MGP_CASTEiJ_T0026126.1 MGP_CASTEiJ_G0016968.1 mouse_genomes_project 10 90147574 90163664 - Scyl2 protein_coding processed_transcript MGP_CASTEiJ_T0026127.1 MGP_CASTEiJ_G0016968.1 mouse_genomes_project 10 90147857 90199495 - MGP_CASTEiJ_P0026127 Scyl2 protein_coding protein_coding MGP_CASTEiJ_T0026128.1 MGP_CASTEiJ_G0016968.1 mouse_genomes_project 10 90158952 90163368 - Scyl2 protein_coding retained_intron MGP_CASTEiJ_T0026129.1 MGP_CASTEiJ_G0016968.1 mouse_genomes_project 10 90159950 90169458 - MGP_CASTEiJ_P0026129 Scyl2 protein_coding protein_coding MGP_CASTEiJ_T0026130.1 MGP_CASTEiJ_G0016968.1 mouse_genomes_project 10 90178936 90199495 - Scyl2 protein_coding retained_intron MGP_CASTEiJ_T0026131.1 MGP_CASTEiJ_G0016968.1 mouse_genomes_project 10 90188461 90199490 - Scyl2 protein_coding retained_intron MGP_CASTEiJ_T0100369.1 MGP_CASTEiJ_G0037282.1 mouse_genomes_project 10 44181700 44181829 - Gm26016 snoRNA snoRNA MGP_CASTEiJ_T0024245.1 MGP_CASTEiJ_G0016486.1 mouse_genomes_project 10 37412839 37458366 + Lama4 protein_coding retained_intron MGP_CASTEiJ_T0024246.1 MGP_CASTEiJ_G0016486.1 mouse_genomes_project 10 37412839 37576491 + MGP_CASTEiJ_P0024246 Lama4 protein_coding protein_coding MGP_CASTEiJ_T0024247.1 MGP_CASTEiJ_G0016486.1 mouse_genomes_project 10 37412877 37504748 + Lama4 protein_coding retained_intron MGP_CASTEiJ_T0024248.1 MGP_CASTEiJ_G0016486.1 mouse_genomes_project 10 37412894 37490718 + Lama4 protein_coding retained_intron MGP_CASTEiJ_T0024249.1 MGP_CASTEiJ_G0016486.1 mouse_genomes_project 10 37412996 37512025 + Lama4 protein_coding retained_intron MGP_CASTEiJ_T0024250.1 MGP_CASTEiJ_G0016486.1 mouse_genomes_project 10 37443617 37557072 + MGP_CASTEiJ_P0024250 Lama4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024251.1 MGP_CASTEiJ_G0016486.1 mouse_genomes_project 10 37511309 37515174 + Lama4 protein_coding retained_intron MGP_CASTEiJ_T0024252.1 MGP_CASTEiJ_G0016486.1 mouse_genomes_project 10 37571974 37576399 + Lama4 protein_coding retained_intron MGP_CASTEiJ_T0099188.1 MGP_CASTEiJ_G0036101.1 mouse_genomes_project 10 84819184 84819279 + Gm25657 snRNA snRNA MGP_CASTEiJ_T0025240.1 MGP_CASTEiJ_G0016735.1 mouse_genomes_project 10 77794641 77795194 + MGP_CASTEiJ_P0025240 Gm10024 protein_coding protein_coding MGP_CASTEiJ_T0099178.1 MGP_CASTEiJ_G0036091.1 mouse_genomes_project 10 57062629 57062736 - Gm23058 snRNA snRNA MGP_CASTEiJ_T0025325.1 MGP_CASTEiJ_G0016766.1 mouse_genomes_project 10 79021607 79026249 + MGP_CASTEiJ_P0025325 protein_coding protein_coding MGP_CASTEiJ_T0024392.1 MGP_CASTEiJ_G0016525.1 mouse_genomes_project 10 41265662 41288677 - MGP_CASTEiJ_P0024392 Nr2e1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024393.1 MGP_CASTEiJ_G0016525.1 mouse_genomes_project 10 41268104 41274794 - MGP_CASTEiJ_P0024393 Nr2e1 protein_coding protein_coding MGP_CASTEiJ_T0024394.1 MGP_CASTEiJ_G0016525.1 mouse_genomes_project 10 41268200 41288642 - MGP_CASTEiJ_P0024394 Nr2e1 protein_coding protein_coding MGP_CASTEiJ_T0024395.1 MGP_CASTEiJ_G0016525.1 mouse_genomes_project 10 41277398 41286057 - MGP_CASTEiJ_P0024395 Nr2e1 protein_coding protein_coding MGP_CASTEiJ_T0024723.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61321002 61402739 - MGP_CASTEiJ_P0024723 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024724.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61321251 61444564 - MGP_CASTEiJ_P0024724 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024725.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61321255 61422027 - MGP_CASTEiJ_P0024725 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024726.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61322059 61404938 - MGP_CASTEiJ_P0024726 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024727.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61336626 61341902 - Hk1 protein_coding retained_intron MGP_CASTEiJ_T0024728.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61347428 61374652 - MGP_CASTEiJ_P0024728 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024729.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61347661 61388296 - MGP_CASTEiJ_P0024729 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024730.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61350721 61404915 - MGP_CASTEiJ_P0024730 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024731.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61350966 61404924 - Hk1 protein_coding retained_intron MGP_CASTEiJ_T0024732.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61371733 61438618 - MGP_CASTEiJ_P0024732 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024733.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61371733 61438618 - MGP_CASTEiJ_P0024733 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024734.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61371733 61438618 - MGP_CASTEiJ_P0024734 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024735.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61371733 61438618 - MGP_CASTEiJ_P0024735 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024736.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61371733 61444508 - MGP_CASTEiJ_P0024736 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024737.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61371733 61438618 - MGP_CASTEiJ_P0024737 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024738.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61371733 61438618 - MGP_CASTEiJ_P0024738 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024739.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61371733 61444508 - MGP_CASTEiJ_P0024739 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024740.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61371733 61438618 - MGP_CASTEiJ_P0024740 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024741.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61371733 61444508 - MGP_CASTEiJ_P0024741 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024742.1 MGP_CASTEiJ_G0016627.1 mouse_genomes_project 10 61371778 61425890 - MGP_CASTEiJ_P0024742 Hk1 protein_coding protein_coding MGP_CASTEiJ_T0024679.1 MGP_CASTEiJ_G0016609.1 mouse_genomes_project 10 60237213 60245437 + MGP_CASTEiJ_P0024679 Prf1 protein_coding protein_coding MGP_CASTEiJ_T0023984.1 MGP_CASTEiJ_G0016384.1 mouse_genomes_project 10 16244841 16251241 - MGP_CASTEiJ_P0023984 Gm4922 protein_coding protein_coding MGP_CASTEiJ_T0006003.1 MGP_CASTEiJ_G0005024.1 mouse_genomes_project 10 131529213 131534106 + A430046D13Rik lincRNA lincRNA MGP_CASTEiJ_T0026860.1 MGP_CASTEiJ_G0017189.1 mouse_genomes_project 10 131485305 131519038 + MGP_CASTEiJ_P0026860 Smarcc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026861.1 MGP_CASTEiJ_G0017189.1 mouse_genomes_project 10 131485356 131520024 + MGP_CASTEiJ_P0026861 Smarcc2 protein_coding protein_coding MGP_CASTEiJ_T0026862.1 MGP_CASTEiJ_G0017189.1 mouse_genomes_project 10 131485356 131520024 + MGP_CASTEiJ_P0026862 Smarcc2 protein_coding protein_coding MGP_CASTEiJ_T0026863.1 MGP_CASTEiJ_G0017189.1 mouse_genomes_project 10 131485356 131520024 + MGP_CASTEiJ_P0026863 Smarcc2 protein_coding protein_coding MGP_CASTEiJ_T0026897.1 MGP_CASTEiJ_G0017206.1 mouse_genomes_project 10 131865925 131869788 - MGP_CASTEiJ_P0026897 Tmem198b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026898.1 MGP_CASTEiJ_G0017206.1 mouse_genomes_project 10 131866661 131869544 - MGP_CASTEiJ_P0026898 Tmem198b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026899.1 MGP_CASTEiJ_G0017206.1 mouse_genomes_project 10 131866915 131870214 - MGP_CASTEiJ_P0026899 Tmem198b protein_coding unknown_likely_coding MGP_CASTEiJ_T0024722.1 MGP_CASTEiJ_G0016626.1 mouse_genomes_project 10 61301516 61318017 + MGP_CASTEiJ_P0024722 Tacr2 protein_coding protein_coding MGP_CASTEiJ_T0012066.1 MGP_CASTEiJ_G0010229.1 mouse_genomes_project 10 51358332 51358767 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0025976.1 MGP_CASTEiJ_G0016930.1 mouse_genomes_project 10 85352781 85361437 - MGP_CASTEiJ_P0025976 Mterf2 protein_coding protein_coding MGP_CASTEiJ_T0025612.1 MGP_CASTEiJ_G0016835.1 mouse_genomes_project 10 80752987 80773698 - MGP_CASTEiJ_P0025612 Atp8b3 protein_coding protein_coding MGP_CASTEiJ_T0026905.1 MGP_CASTEiJ_G0017211.1 mouse_genomes_project 10 131984080 131989316 + MGP_CASTEiJ_P0026905 Cd63 protein_coding protein_coding MGP_CASTEiJ_T0026906.1 MGP_CASTEiJ_G0017211.1 mouse_genomes_project 10 131985025 131989316 + MGP_CASTEiJ_P0026906 Cd63 protein_coding protein_coding MGP_CASTEiJ_T0024420.1 MGP_CASTEiJ_G0016531.1 mouse_genomes_project 10 41993948 42188106 + MGP_CASTEiJ_P0024420 Pdss2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024421.1 MGP_CASTEiJ_G0016531.1 mouse_genomes_project 10 41993948 42227242 + MGP_CASTEiJ_P0024421 Pdss2 protein_coding protein_coding MGP_CASTEiJ_T0024422.1 MGP_CASTEiJ_G0016531.1 mouse_genomes_project 10 41993979 42125450 + Pdss2 protein_coding retained_intron MGP_CASTEiJ_T0024423.1 MGP_CASTEiJ_G0016531.1 mouse_genomes_project 10 41994062 42258001 + MGP_CASTEiJ_P0024423 Pdss2 protein_coding protein_coding MGP_CASTEiJ_T0024424.1 MGP_CASTEiJ_G0016531.1 mouse_genomes_project 10 41994198 42125047 + Pdss2 protein_coding retained_intron MGP_CASTEiJ_T0024425.1 MGP_CASTEiJ_G0016531.1 mouse_genomes_project 10 42175741 42226888 + MGP_CASTEiJ_P0024425 Pdss2 protein_coding protein_coding MGP_CASTEiJ_T0000785.1 MGP_CASTEiJ_G0000726.1 mouse_genomes_project 10 87657785 87660100 + TEC TEC MGP_CASTEiJ_T0000786.1 MGP_CASTEiJ_G0000726.1 mouse_genomes_project 10 87659023 87659395 + TEC TEC MGP_CASTEiJ_T0025067.1 MGP_CASTEiJ_G0016689.1 mouse_genomes_project 10 75442701 75453885 - MGP_CASTEiJ_P0025067 Lrrc75b protein_coding protein_coding MGP_CASTEiJ_T0101507.1 MGP_CASTEiJ_G0038407.1 mouse_genomes_project 10 89179034 89180592 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101508.1 MGP_CASTEiJ_G0038407.1 mouse_genomes_project 10 89179810 89180207 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0099193.1 MGP_CASTEiJ_G0036106.1 mouse_genomes_project 10 90996417 90996512 + Gm22602 snRNA snRNA MGP_CASTEiJ_T0024370.1 MGP_CASTEiJ_G0016520.1 mouse_genomes_project 10 40468123 40562018 + MGP_CASTEiJ_P0024370 Sesn1 protein_coding protein_coding MGP_CASTEiJ_T0024371.1 MGP_CASTEiJ_G0016520.1 mouse_genomes_project 10 40538673 40562018 + MGP_CASTEiJ_P0024371 Sesn1 protein_coding protein_coding MGP_CASTEiJ_T0023853.1 MGP_CASTEiJ_G0016353.1 mouse_genomes_project 10 7881061 7881572 + MGP_CASTEiJ_P0023853 Gm10944 protein_coding protein_coding MGP_CASTEiJ_T0009397.1 MGP_CASTEiJ_G0007585.1 mouse_genomes_project 10 131425919 131426015 + Gm25361 miRNA miRNA MGP_CASTEiJ_T0024065.1 MGP_CASTEiJ_G0016409.1 mouse_genomes_project 10 20379211 20435022 + MGP_CASTEiJ_P0024065 Slc2a12 protein_coding protein_coding MGP_CASTEiJ_T0024066.1 MGP_CASTEiJ_G0016409.1 mouse_genomes_project 10 20383217 20401055 + Slc2a12 protein_coding processed_transcript MGP_CASTEiJ_T0006002.1 MGP_CASTEiJ_G0005023.1 mouse_genomes_project 10 131238875 131241076 - Gm26847 lincRNA lincRNA MGP_CASTEiJ_T0098812.1 MGP_CASTEiJ_G0035742.1 mouse_genomes_project 10 123185253 123186361 - Gm15961 sense_intronic sense_intronic MGP_CASTEiJ_T0024043.1 MGP_CASTEiJ_G0016403.1 mouse_genomes_project 10 18947060 18950507 + MGP_CASTEiJ_P0024043 protein_coding protein_coding MGP_CASTEiJ_T0026372.1 MGP_CASTEiJ_G0017032.1 mouse_genomes_project 10 107749679 108257073 + MGP_CASTEiJ_P0026372 Ppfia2 protein_coding protein_coding MGP_CASTEiJ_T0005963.1 MGP_CASTEiJ_G0005003.1 mouse_genomes_project 10 91743398 91744478 + Gm26765 lincRNA lincRNA MGP_CASTEiJ_T0026634.1 MGP_CASTEiJ_G0017116.1 mouse_genomes_project 10 125814993 126332867 + MGP_CASTEiJ_P0026634 Fam19a2 protein_coding protein_coding MGP_CASTEiJ_T0009393.1 MGP_CASTEiJ_G0007581.1 mouse_genomes_project 10 131075604 131075682 + Mir677 miRNA miRNA MGP_CASTEiJ_T0010944.1 MGP_CASTEiJ_G0009132.1 mouse_genomes_project 10 75325064 75325387 + Gm25545 misc_RNA misc_RNA MGP_CASTEiJ_T0026688.1 MGP_CASTEiJ_G0017136.1 mouse_genomes_project 10 130090346 130133456 - MGP_CASTEiJ_P0026688 Kif5a protein_coding protein_coding MGP_CASTEiJ_T0023902.1 MGP_CASTEiJ_G0016362.1 mouse_genomes_project 10 10399038 10428681 - MGP_CASTEiJ_P0023902 Zc2hc1b protein_coding protein_coding MGP_CASTEiJ_T0099159.1 MGP_CASTEiJ_G0036072.1 mouse_genomes_project 10 20891516 20891623 - Gm24655 snRNA snRNA MGP_CASTEiJ_T0026001.1 MGP_CASTEiJ_G0016939.1 mouse_genomes_project 10 86321062 86352999 + MGP_CASTEiJ_P0026001 Fbxo7 protein_coding protein_coding MGP_CASTEiJ_T0026002.1 MGP_CASTEiJ_G0016939.1 mouse_genomes_project 10 86321118 86347761 + MGP_CASTEiJ_P0026002 Fbxo7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026003.1 MGP_CASTEiJ_G0016939.1 mouse_genomes_project 10 86321150 86328279 + MGP_CASTEiJ_P0026003 Fbxo7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026004.1 MGP_CASTEiJ_G0016939.1 mouse_genomes_project 10 86321320 86347791 + MGP_CASTEiJ_P0026004 Fbxo7 protein_coding protein_coding MGP_CASTEiJ_T0026005.1 MGP_CASTEiJ_G0016939.1 mouse_genomes_project 10 86332099 86351301 + Fbxo7 protein_coding processed_transcript MGP_CASTEiJ_T0026006.1 MGP_CASTEiJ_G0016939.1 mouse_genomes_project 10 86341912 86346275 + Fbxo7 protein_coding retained_intron MGP_CASTEiJ_T0009396.1 MGP_CASTEiJ_G0007584.1 mouse_genomes_project 10 131412005 131412074 + Mir6915 miRNA miRNA MGP_CASTEiJ_T0024205.1 MGP_CASTEiJ_G0016464.1 mouse_genomes_project 10 31295214 31719053 + MGP_CASTEiJ_P0024205 Trdn protein_coding protein_coding MGP_CASTEiJ_T0024206.1 MGP_CASTEiJ_G0016464.1 mouse_genomes_project 10 31295455 31716858 + MGP_CASTEiJ_P0024206 Trdn protein_coding unknown_likely_coding MGP_CASTEiJ_T0026864.1 MGP_CASTEiJ_G0017190.1 mouse_genomes_project 10 131520708 131523663 - MGP_CASTEiJ_P0026864 Myl6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026865.1 MGP_CASTEiJ_G0017190.1 mouse_genomes_project 10 131520710 131523727 - MGP_CASTEiJ_P0026865 Myl6 protein_coding protein_coding MGP_CASTEiJ_T0099156.1 MGP_CASTEiJ_G0036069.1 mouse_genomes_project 10 9548365 9548532 + Gm23680 snRNA snRNA MGP_CASTEiJ_T0026515.1 MGP_CASTEiJ_G0017084.1 mouse_genomes_project 10 119770579 119819411 + Cpm protein_coding retained_intron MGP_CASTEiJ_T0026516.1 MGP_CASTEiJ_G0017084.1 mouse_genomes_project 10 119770579 119776512 + Cpm protein_coding processed_transcript MGP_CASTEiJ_T0026517.1 MGP_CASTEiJ_G0017084.1 mouse_genomes_project 10 119770579 119839779 + MGP_CASTEiJ_P0026517 Cpm protein_coding protein_coding MGP_CASTEiJ_T0026518.1 MGP_CASTEiJ_G0017084.1 mouse_genomes_project 10 119770588 119827957 + MGP_CASTEiJ_P0026518 Cpm protein_coding unknown_likely_coding MGP_CASTEiJ_T0026519.1 MGP_CASTEiJ_G0017084.1 mouse_genomes_project 10 119828354 119837361 + Cpm protein_coding retained_intron MGP_CASTEiJ_T0024443.1 MGP_CASTEiJ_G0016540.1 mouse_genomes_project 10 43300198 43321732 - MGP_CASTEiJ_P0024443 Prdm1 protein_coding protein_coding MGP_CASTEiJ_T0024444.1 MGP_CASTEiJ_G0016540.1 mouse_genomes_project 10 43301306 43321671 - MGP_CASTEiJ_P0024444 Prdm1 protein_coding protein_coding MGP_CASTEiJ_T0024445.1 MGP_CASTEiJ_G0016540.1 mouse_genomes_project 10 43302682 43320194 - MGP_CASTEiJ_P0024445 Prdm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024446.1 MGP_CASTEiJ_G0016540.1 mouse_genomes_project 10 43309704 43399128 - Prdm1 protein_coding processed_transcript MGP_CASTEiJ_T0026587.1 MGP_CASTEiJ_G0017101.1 mouse_genomes_project 10 123313801 123375106 - MGP_CASTEiJ_P0026587 Lemd3 protein_coding protein_coding MGP_CASTEiJ_T0026588.1 MGP_CASTEiJ_G0017101.1 mouse_genomes_project 10 123314240 123375106 - MGP_CASTEiJ_P0026588 Lemd3 protein_coding protein_coding MGP_CASTEiJ_T0024314.1 MGP_CASTEiJ_G0016508.1 mouse_genomes_project 10 39684781 39687079 - MGP_CASTEiJ_P0024314 Gpr6 protein_coding protein_coding MGP_CASTEiJ_T0009345.1 MGP_CASTEiJ_G0007533.1 mouse_genomes_project 10 75940608 75940700 + Mir6409 miRNA miRNA MGP_CASTEiJ_T0025369.1 MGP_CASTEiJ_G0016784.1 mouse_genomes_project 10 79844639 79852024 + MGP_CASTEiJ_P0025369 Bsg protein_coding protein_coding MGP_CASTEiJ_T0025370.1 MGP_CASTEiJ_G0016784.1 mouse_genomes_project 10 79844647 79850862 + Bsg protein_coding processed_transcript MGP_CASTEiJ_T0025371.1 MGP_CASTEiJ_G0016784.1 mouse_genomes_project 10 79844657 79852106 + MGP_CASTEiJ_P0025371 Bsg protein_coding protein_coding MGP_CASTEiJ_T0025372.1 MGP_CASTEiJ_G0016784.1 mouse_genomes_project 10 79849732 79852098 + MGP_CASTEiJ_P0025372 Bsg protein_coding protein_coding MGP_CASTEiJ_T0025373.1 MGP_CASTEiJ_G0016784.1 mouse_genomes_project 10 79850238 79851839 + Bsg protein_coding retained_intron MGP_CASTEiJ_T0026060.1 MGP_CASTEiJ_G0016954.1 mouse_genomes_project 10 88591514 88641027 + MGP_CASTEiJ_P0026060 Ccdc53 protein_coding protein_coding MGP_CASTEiJ_T0026061.1 MGP_CASTEiJ_G0016954.1 mouse_genomes_project 10 88591567 88607045 + MGP_CASTEiJ_P0026061 Ccdc53 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026062.1 MGP_CASTEiJ_G0016954.1 mouse_genomes_project 10 88591573 88640875 + MGP_CASTEiJ_P0026062 Ccdc53 protein_coding protein_coding MGP_CASTEiJ_T0026063.1 MGP_CASTEiJ_G0016954.1 mouse_genomes_project 10 88591592 88618640 + MGP_CASTEiJ_P0026063 Ccdc53 protein_coding protein_coding MGP_CASTEiJ_T0026064.1 MGP_CASTEiJ_G0016954.1 mouse_genomes_project 10 88591605 88606751 + Ccdc53 protein_coding retained_intron MGP_CASTEiJ_T0026065.1 MGP_CASTEiJ_G0016954.1 mouse_genomes_project 10 88591684 88618419 + MGP_CASTEiJ_P0026065 Ccdc53 protein_coding protein_coding MGP_CASTEiJ_T0026066.1 MGP_CASTEiJ_G0016954.1 mouse_genomes_project 10 88595951 88628813 + Ccdc53 protein_coding processed_transcript MGP_CASTEiJ_T0026067.1 MGP_CASTEiJ_G0016954.1 mouse_genomes_project 10 88629480 88640876 + Ccdc53 protein_coding processed_transcript MGP_CASTEiJ_T0026349.1 MGP_CASTEiJ_G0017024.1 mouse_genomes_project 10 103650819 103660641 - MGP_CASTEiJ_P0026349 Nts protein_coding protein_coding MGP_CASTEiJ_T0100402.1 MGP_CASTEiJ_G0037315.1 mouse_genomes_project 10 130930360 130930491 - Gm23996 snoRNA snoRNA MGP_CASTEiJ_T0005979.1 MGP_CASTEiJ_G0005006.1 mouse_genomes_project 10 92796407 93012684 - Gm20757 lincRNA lincRNA MGP_CASTEiJ_T0098710.1 MGP_CASTEiJ_G0035641.1 mouse_genomes_project 10 27006657 27006811 - Gm22811 ribozyme ribozyme MGP_CASTEiJ_T0025570.1 MGP_CASTEiJ_G0016827.1 mouse_genomes_project 10 80534618 80541087 + MGP_CASTEiJ_P0025570 Reep6 protein_coding protein_coding MGP_CASTEiJ_T0025571.1 MGP_CASTEiJ_G0016827.1 mouse_genomes_project 10 80534618 80541087 + MGP_CASTEiJ_P0025571 Reep6 protein_coding protein_coding MGP_CASTEiJ_T0025572.1 MGP_CASTEiJ_G0016827.1 mouse_genomes_project 10 80534810 80541086 + MGP_CASTEiJ_P0025572 Reep6 protein_coding protein_coding MGP_CASTEiJ_T0025573.1 MGP_CASTEiJ_G0016827.1 mouse_genomes_project 10 80534863 80539091 + Reep6 protein_coding retained_intron MGP_CASTEiJ_T0025574.1 MGP_CASTEiJ_G0016827.1 mouse_genomes_project 10 80534867 80540228 + MGP_CASTEiJ_P0025574 Reep6 protein_coding protein_coding MGP_CASTEiJ_T0005948.1 MGP_CASTEiJ_G0004991.1 mouse_genomes_project 10 77538973 77574606 + 2810425M01Rik lincRNA lincRNA MGP_CASTEiJ_T0025681.1 MGP_CASTEiJ_G0016860.1 mouse_genomes_project 10 81224644 81295021 - MGP_CASTEiJ_P0025681 Gng7 protein_coding protein_coding MGP_CASTEiJ_T0025682.1 MGP_CASTEiJ_G0016860.1 mouse_genomes_project 10 81224644 81279805 - MGP_CASTEiJ_P0025682 Gng7 protein_coding protein_coding MGP_CASTEiJ_T0025683.1 MGP_CASTEiJ_G0016860.1 mouse_genomes_project 10 81224644 81295001 - MGP_CASTEiJ_P0025683 Gng7 protein_coding protein_coding MGP_CASTEiJ_T0025684.1 MGP_CASTEiJ_G0016860.1 mouse_genomes_project 10 81224649 81279818 - MGP_CASTEiJ_P0025684 Gng7 protein_coding protein_coding MGP_CASTEiJ_T0025685.1 MGP_CASTEiJ_G0016860.1 mouse_genomes_project 10 81227226 81276627 - MGP_CASTEiJ_P0025685 Gng7 protein_coding protein_coding MGP_CASTEiJ_T0025686.1 MGP_CASTEiJ_G0016860.1 mouse_genomes_project 10 81227751 81294989 - MGP_CASTEiJ_P0025686 Gng7 protein_coding protein_coding MGP_CASTEiJ_T0023739.1 MGP_CASTEiJ_G0016329.1 mouse_genomes_project 10 2892459 2898926 - MGP_CASTEiJ_P0023739 Fbxo5 protein_coding protein_coding MGP_CASTEiJ_T0023740.1 MGP_CASTEiJ_G0016329.1 mouse_genomes_project 10 2895509 2897925 - Fbxo5 protein_coding processed_transcript MGP_CASTEiJ_T0025905.1 MGP_CASTEiJ_G0016910.1 mouse_genomes_project 10 82808937 82851570 - MGP_CASTEiJ_P0025905 Glt8d2 protein_coding protein_coding MGP_CASTEiJ_T0025906.1 MGP_CASTEiJ_G0016910.1 mouse_genomes_project 10 82809840 82811988 - Glt8d2 protein_coding retained_intron MGP_CASTEiJ_T0025907.1 MGP_CASTEiJ_G0016910.1 mouse_genomes_project 10 82810093 82818878 - MGP_CASTEiJ_P0025907 Glt8d2 protein_coding protein_coding MGP_CASTEiJ_T0025908.1 MGP_CASTEiJ_G0016910.1 mouse_genomes_project 10 82811323 82851537 - MGP_CASTEiJ_P0025908 Glt8d2 protein_coding protein_coding MGP_CASTEiJ_T0025909.1 MGP_CASTEiJ_G0016910.1 mouse_genomes_project 10 82814404 82851537 - MGP_CASTEiJ_P0025909 Glt8d2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025910.1 MGP_CASTEiJ_G0016910.1 mouse_genomes_project 10 82823989 82829845 - MGP_CASTEiJ_P0025910 Glt8d2 protein_coding protein_coding MGP_CASTEiJ_T0025911.1 MGP_CASTEiJ_G0016910.1 mouse_genomes_project 10 82828641 82851549 - Glt8d2 protein_coding retained_intron MGP_CASTEiJ_T0026835.1 MGP_CASTEiJ_G0017179.1 mouse_genomes_project 10 131285262 131307088 + MGP_CASTEiJ_P0026835 Stat2 protein_coding protein_coding MGP_CASTEiJ_T0026836.1 MGP_CASTEiJ_G0017179.1 mouse_genomes_project 10 131285262 131307088 + MGP_CASTEiJ_P0026836 Stat2 protein_coding protein_coding MGP_CASTEiJ_T0025895.1 MGP_CASTEiJ_G0016907.1 mouse_genomes_project 10 82496299 82498517 + MGP_CASTEiJ_P0025895 protein_coding protein_coding MGP_CASTEiJ_T0026817.1 MGP_CASTEiJ_G0017174.1 mouse_genomes_project 10 131212199 131214090 - MGP_CASTEiJ_P0026817 Spryd4 protein_coding protein_coding MGP_CASTEiJ_T0026937.1 MGP_CASTEiJ_G0017228.1 mouse_genomes_project 10 132405975 132407519 + MGP_CASTEiJ_P0026937 Olfr782 protein_coding protein_coding MGP_CASTEiJ_T0012044.1 MGP_CASTEiJ_G0010207.1 mouse_genomes_project 10 11202590 11205664 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024666.1 MGP_CASTEiJ_G0016607.1 mouse_genomes_project 10 60099499 60116926 + MGP_CASTEiJ_P0024666 Tbata protein_coding protein_coding MGP_CASTEiJ_T0024667.1 MGP_CASTEiJ_G0016607.1 mouse_genomes_project 10 60099509 60109065 + MGP_CASTEiJ_P0024667 Tbata protein_coding protein_coding MGP_CASTEiJ_T0024668.1 MGP_CASTEiJ_G0016607.1 mouse_genomes_project 10 60099531 60116931 + MGP_CASTEiJ_P0024668 Tbata protein_coding protein_coding MGP_CASTEiJ_T0024669.1 MGP_CASTEiJ_G0016607.1 mouse_genomes_project 10 60101909 60111618 + MGP_CASTEiJ_P0024669 Tbata protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024670.1 MGP_CASTEiJ_G0016607.1 mouse_genomes_project 10 60101951 60116765 + MGP_CASTEiJ_P0024670 Tbata protein_coding unknown_likely_coding MGP_CASTEiJ_T0024671.1 MGP_CASTEiJ_G0016607.1 mouse_genomes_project 10 60102806 60109062 + Tbata protein_coding processed_transcript MGP_CASTEiJ_T0024672.1 MGP_CASTEiJ_G0016607.1 mouse_genomes_project 10 60102806 60109062 + Tbata protein_coding processed_transcript MGP_CASTEiJ_T0024673.1 MGP_CASTEiJ_G0016607.1 mouse_genomes_project 10 60102806 60109062 + Tbata protein_coding processed_transcript MGP_CASTEiJ_T0024674.1 MGP_CASTEiJ_G0016607.1 mouse_genomes_project 10 60102806 60109061 + MGP_CASTEiJ_P0024674 Tbata protein_coding protein_coding MGP_CASTEiJ_T0024675.1 MGP_CASTEiJ_G0016607.1 mouse_genomes_project 10 60102916 60109062 + Tbata protein_coding processed_transcript MGP_CASTEiJ_T0024676.1 MGP_CASTEiJ_G0016607.1 mouse_genomes_project 10 60103465 60116929 + MGP_CASTEiJ_P0024676 Tbata protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026945.1 MGP_CASTEiJ_G0017236.1 mouse_genomes_project 10 132587394 132588464 + MGP_CASTEiJ_P0026945 protein_coding protein_coding MGP_CASTEiJ_T0025804.1 MGP_CASTEiJ_G0016889.1 mouse_genomes_project 10 81707396 81745605 - MGP_CASTEiJ_P0025804 Nfic protein_coding protein_coding MGP_CASTEiJ_T0025805.1 MGP_CASTEiJ_G0016889.1 mouse_genomes_project 10 81710346 81745532 - MGP_CASTEiJ_P0025805 Nfic protein_coding protein_coding MGP_CASTEiJ_T0025806.1 MGP_CASTEiJ_G0016889.1 mouse_genomes_project 10 81710346 81745591 - MGP_CASTEiJ_P0025806 Nfic protein_coding protein_coding MGP_CASTEiJ_T0025807.1 MGP_CASTEiJ_G0016889.1 mouse_genomes_project 10 81710402 81711761 - Nfic protein_coding processed_transcript MGP_CASTEiJ_T0025808.1 MGP_CASTEiJ_G0016889.1 mouse_genomes_project 10 81711975 81721845 - MGP_CASTEiJ_P0025808 Nfic protein_coding protein_coding MGP_CASTEiJ_T0025809.1 MGP_CASTEiJ_G0016889.1 mouse_genomes_project 10 81712160 81751821 - MGP_CASTEiJ_P0025809 Nfic protein_coding protein_coding MGP_CASTEiJ_T0009337.1 MGP_CASTEiJ_G0007525.1 mouse_genomes_project 10 51005331 51005468 + Gm24084 miRNA miRNA MGP_CASTEiJ_T0099192.1 MGP_CASTEiJ_G0036105.1 mouse_genomes_project 10 90344662 90344769 - Gm26180 snRNA snRNA MGP_CASTEiJ_T0025967.1 MGP_CASTEiJ_G0016926.1 mouse_genomes_project 10 84965341 85128279 + MGP_CASTEiJ_P0025967 Rfx4 protein_coding protein_coding MGP_CASTEiJ_T0025968.1 MGP_CASTEiJ_G0016926.1 mouse_genomes_project 10 84972061 85029257 + Rfx4 protein_coding processed_transcript MGP_CASTEiJ_T0025969.1 MGP_CASTEiJ_G0016926.1 mouse_genomes_project 10 84972061 85029257 + Rfx4 protein_coding processed_transcript MGP_CASTEiJ_T0025970.1 MGP_CASTEiJ_G0016926.1 mouse_genomes_project 10 85054169 85091984 + Rfx4 protein_coding processed_transcript MGP_CASTEiJ_T0025971.1 MGP_CASTEiJ_G0016926.1 mouse_genomes_project 10 85054169 85128274 + MGP_CASTEiJ_P0025971 Rfx4 protein_coding protein_coding MGP_CASTEiJ_T0026179.1 MGP_CASTEiJ_G0016974.1 mouse_genomes_project 10 91707072 91715352 - MGP_CASTEiJ_P0026179 Slc25a3 protein_coding protein_coding MGP_CASTEiJ_T0026180.1 MGP_CASTEiJ_G0016974.1 mouse_genomes_project 10 91707289 91715250 - MGP_CASTEiJ_P0026180 Slc25a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026181.1 MGP_CASTEiJ_G0016974.1 mouse_genomes_project 10 91707290 91715296 - MGP_CASTEiJ_P0026181 Slc25a3 protein_coding protein_coding MGP_CASTEiJ_T0026182.1 MGP_CASTEiJ_G0016974.1 mouse_genomes_project 10 91707306 91715248 - MGP_CASTEiJ_P0026182 Slc25a3 protein_coding protein_coding MGP_CASTEiJ_T0026183.1 MGP_CASTEiJ_G0016974.1 mouse_genomes_project 10 91707509 91710337 - Slc25a3 protein_coding retained_intron MGP_CASTEiJ_T0026184.1 MGP_CASTEiJ_G0016974.1 mouse_genomes_project 10 91708666 91711231 - Slc25a3 protein_coding processed_transcript MGP_CASTEiJ_T0026185.1 MGP_CASTEiJ_G0016974.1 mouse_genomes_project 10 91708692 91713510 - Slc25a3 protein_coding retained_intron MGP_CASTEiJ_T0026186.1 MGP_CASTEiJ_G0016974.1 mouse_genomes_project 10 91710271 91715315 - Slc25a3 protein_coding retained_intron MGP_CASTEiJ_T0002968.1 MGP_CASTEiJ_G0002779.1 mouse_genomes_project 10 86396921 86416091 + 4930486F22Rik antisense antisense MGP_CASTEiJ_T0025977.1 MGP_CASTEiJ_G0016931.1 mouse_genomes_project 10 85365097 85421531 - MGP_CASTEiJ_P0025977 Cry1 protein_coding protein_coding MGP_CASTEiJ_T0025538.1 MGP_CASTEiJ_G0016820.1 mouse_genomes_project 10 80446003 80453683 + MGP_CASTEiJ_P0025538 Ndufs7 protein_coding protein_coding MGP_CASTEiJ_T0025539.1 MGP_CASTEiJ_G0016820.1 mouse_genomes_project 10 80446331 80450302 + Ndufs7 protein_coding retained_intron MGP_CASTEiJ_T0025540.1 MGP_CASTEiJ_G0016820.1 mouse_genomes_project 10 80446334 80453682 + MGP_CASTEiJ_P0025540 Ndufs7 protein_coding protein_coding MGP_CASTEiJ_T0025541.1 MGP_CASTEiJ_G0016820.1 mouse_genomes_project 10 80446342 80450831 + Ndufs7 protein_coding retained_intron MGP_CASTEiJ_T0025542.1 MGP_CASTEiJ_G0016820.1 mouse_genomes_project 10 80446367 80453684 + Ndufs7 protein_coding processed_transcript MGP_CASTEiJ_T0025543.1 MGP_CASTEiJ_G0016820.1 mouse_genomes_project 10 80450203 80452030 + Ndufs7 protein_coding retained_intron MGP_CASTEiJ_T0025781.1 MGP_CASTEiJ_G0016884.1 mouse_genomes_project 10 81666810 81677215 + MGP_CASTEiJ_P0025781 Mfsd12 protein_coding protein_coding MGP_CASTEiJ_T0025782.1 MGP_CASTEiJ_G0016884.1 mouse_genomes_project 10 81666871 81672223 + MGP_CASTEiJ_P0025782 Mfsd12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000777.1 MGP_CASTEiJ_G0000718.1 mouse_genomes_project 10 35570513 35570860 + TEC TEC MGP_CASTEiJ_T0024877.1 MGP_CASTEiJ_G0016663.1 mouse_genomes_project 10 68590944 68684990 + MGP_CASTEiJ_P0024877 Rhobtb1 protein_coding protein_coding MGP_CASTEiJ_T0024878.1 MGP_CASTEiJ_G0016663.1 mouse_genomes_project 10 68644355 68725977 + MGP_CASTEiJ_P0024878 Rhobtb1 protein_coding protein_coding MGP_CASTEiJ_T0024880.1 MGP_CASTEiJ_G0016663.1 mouse_genomes_project 10 68648474 68727851 + MGP_CASTEiJ_P0024880 Rhobtb1 protein_coding protein_coding MGP_CASTEiJ_T0024881.1 MGP_CASTEiJ_G0016663.1 mouse_genomes_project 10 68648497 68709454 + Rhobtb1 protein_coding retained_intron MGP_CASTEiJ_T0024882.1 MGP_CASTEiJ_G0016663.1 mouse_genomes_project 10 68648516 68726077 + MGP_CASTEiJ_P0024882 Rhobtb1 protein_coding protein_coding MGP_CASTEiJ_T0024883.1 MGP_CASTEiJ_G0016663.1 mouse_genomes_project 10 68648922 68701280 + MGP_CASTEiJ_P0024883 Rhobtb1 protein_coding protein_coding MGP_CASTEiJ_T0024884.1 MGP_CASTEiJ_G0016663.1 mouse_genomes_project 10 68649009 68685000 + MGP_CASTEiJ_P0024884 Rhobtb1 protein_coding protein_coding MGP_CASTEiJ_T0024885.1 MGP_CASTEiJ_G0016663.1 mouse_genomes_project 10 68649032 68727840 + MGP_CASTEiJ_P0024885 Rhobtb1 protein_coding protein_coding MGP_CASTEiJ_T0024886.1 MGP_CASTEiJ_G0016663.1 mouse_genomes_project 10 68651136 68725787 + MGP_CASTEiJ_P0024886 Rhobtb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024887.1 MGP_CASTEiJ_G0016663.1 mouse_genomes_project 10 68655236 68685005 + MGP_CASTEiJ_P0024887 Rhobtb1 protein_coding protein_coding MGP_CASTEiJ_T0024888.1 MGP_CASTEiJ_G0016663.1 mouse_genomes_project 10 68680325 68725851 + MGP_CASTEiJ_P0024888 Rhobtb1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024889.1 MGP_CASTEiJ_G0016663.1 mouse_genomes_project 10 68700709 68706123 + Rhobtb1 protein_coding processed_transcript MGP_CASTEiJ_T0024890.1 MGP_CASTEiJ_G0016663.1 mouse_genomes_project 10 68715156 68726077 + MGP_CASTEiJ_P0024890 Rhobtb1 protein_coding protein_coding MGP_CASTEiJ_T0024891.1 MGP_CASTEiJ_G0016663.1 mouse_genomes_project 10 68715269 68722989 + Rhobtb1 protein_coding processed_transcript MGP_CASTEiJ_T0005943.1 MGP_CASTEiJ_G0004986.1 mouse_genomes_project 10 65903661 65904605 + Gm28139 lincRNA lincRNA MGP_CASTEiJ_T0026755.1 MGP_CASTEiJ_G0017152.1 mouse_genomes_project 10 130570948 130576748 - MGP_CASTEiJ_P0026755 Nab2 protein_coding protein_coding MGP_CASTEiJ_T0026756.1 MGP_CASTEiJ_G0017152.1 mouse_genomes_project 10 130570949 130576670 - MGP_CASTEiJ_P0026756 Nab2 protein_coding protein_coding MGP_CASTEiJ_T0026757.1 MGP_CASTEiJ_G0017152.1 mouse_genomes_project 10 130574962 130575519 - MGP_CASTEiJ_P0026757 Nab2 protein_coding protein_coding MGP_CASTEiJ_T0026758.1 MGP_CASTEiJ_G0017152.1 mouse_genomes_project 10 130575021 130578653 - MGP_CASTEiJ_P0026758 Nab2 protein_coding protein_coding MGP_CASTEiJ_T0026584.1 MGP_CASTEiJ_G0017100.1 mouse_genomes_project 10 123165718 123286522 - MGP_CASTEiJ_P0026584 Msrb3 protein_coding protein_coding MGP_CASTEiJ_T0026585.1 MGP_CASTEiJ_G0017100.1 mouse_genomes_project 10 123168340 123239637 - Msrb3 protein_coding processed_transcript MGP_CASTEiJ_T0026586.1 MGP_CASTEiJ_G0017100.1 mouse_genomes_project 10 123168482 123259584 - MGP_CASTEiJ_P0026586 Msrb3 protein_coding protein_coding MGP_CASTEiJ_T0002928.1 MGP_CASTEiJ_G0002748.1 mouse_genomes_project 10 44201508 44205062 - antisense antisense MGP_CASTEiJ_T0009400.1 MGP_CASTEiJ_G0007588.1 mouse_genomes_project 10 131593605 131593724 - miRNA miRNA MGP_CASTEiJ_T0000784.1 MGP_CASTEiJ_G0000725.1 mouse_genomes_project 10 84259801 84260272 + TEC TEC MGP_CASTEiJ_T0100351.1 MGP_CASTEiJ_G0037264.1 mouse_genomes_project 10 9553954 9554160 + Gm25139 snoRNA snoRNA MGP_CASTEiJ_T0024294.1 MGP_CASTEiJ_G0016497.1 mouse_genomes_project 10 38537573 38563340 - MGP_CASTEiJ_P0024294 Mfsd4b1 protein_coding protein_coding MGP_CASTEiJ_T0024295.1 MGP_CASTEiJ_G0016497.1 mouse_genomes_project 10 38544137 38563231 - Mfsd4b1 protein_coding processed_transcript MGP_CASTEiJ_T0023966.1 MGP_CASTEiJ_G0016379.1 mouse_genomes_project 10 15569139 15614259 - MGP_CASTEiJ_P0023966 Ect2l protein_coding unknown_likely_coding MGP_CASTEiJ_T0023967.1 MGP_CASTEiJ_G0016379.1 mouse_genomes_project 10 15569139 15652973 - MGP_CASTEiJ_P0023967 Ect2l protein_coding protein_coding MGP_CASTEiJ_T0026436.1 MGP_CASTEiJ_G0017056.1 mouse_genomes_project 10 114649173 114652755 - MGP_CASTEiJ_P0026436 Atxn7l3b protein_coding protein_coding MGP_CASTEiJ_T0026437.1 MGP_CASTEiJ_G0017056.1 mouse_genomes_project 10 114651524 114652761 - Atxn7l3b protein_coding processed_transcript MGP_CASTEiJ_T0024966.1 MGP_CASTEiJ_G0016673.1 mouse_genomes_project 10 70812188 70818736 - Tfam protein_coding processed_transcript MGP_CASTEiJ_T0024967.1 MGP_CASTEiJ_G0016673.1 mouse_genomes_project 10 70812199 70821694 - MGP_CASTEiJ_P0024967 Tfam protein_coding protein_coding MGP_CASTEiJ_T0024968.1 MGP_CASTEiJ_G0016673.1 mouse_genomes_project 10 70812301 70821354 - MGP_CASTEiJ_P0024968 Tfam protein_coding protein_coding MGP_CASTEiJ_T0024969.1 MGP_CASTEiJ_G0016673.1 mouse_genomes_project 10 70812863 70820457 - MGP_CASTEiJ_P0024969 Tfam protein_coding protein_coding MGP_CASTEiJ_T0026358.1 MGP_CASTEiJ_G0017028.1 mouse_genomes_project 10 104634748 104690365 + MGP_CASTEiJ_P0026358 Slc6a15 protein_coding protein_coding MGP_CASTEiJ_T0026359.1 MGP_CASTEiJ_G0017028.1 mouse_genomes_project 10 104634748 104690365 + MGP_CASTEiJ_P0026359 Slc6a15 protein_coding protein_coding MGP_CASTEiJ_T0009342.1 MGP_CASTEiJ_G0007530.1 mouse_genomes_project 10 60775300 60775389 + Mir5108 miRNA miRNA MGP_CASTEiJ_T0025241.1 MGP_CASTEiJ_G0016736.1 mouse_genomes_project 10 77798989 77799352 + MGP_CASTEiJ_P0025241 Gm10142 protein_coding protein_coding MGP_CASTEiJ_T0024858.1 MGP_CASTEiJ_G0016656.1 mouse_genomes_project 10 66879122 66883549 - MGP_CASTEiJ_P0024858 Ado protein_coding protein_coding MGP_CASTEiJ_T0026842.1 MGP_CASTEiJ_G0017184.1 mouse_genomes_project 10 131382219 131391456 - MGP_CASTEiJ_P0026842 Coq10a protein_coding protein_coding MGP_CASTEiJ_T0026843.1 MGP_CASTEiJ_G0017184.1 mouse_genomes_project 10 131382746 131390126 - MGP_CASTEiJ_P0026843 Coq10a protein_coding unknown_likely_coding MGP_CASTEiJ_T0025597.1 MGP_CASTEiJ_G0016833.1 mouse_genomes_project 10 80626978 80652383 - MGP_CASTEiJ_P0025597 Tcf3 protein_coding protein_coding MGP_CASTEiJ_T0025598.1 MGP_CASTEiJ_G0016833.1 mouse_genomes_project 10 80626978 80652393 - MGP_CASTEiJ_P0025598 Tcf3 protein_coding protein_coding MGP_CASTEiJ_T0025599.1 MGP_CASTEiJ_G0016833.1 mouse_genomes_project 10 80627011 80652389 - MGP_CASTEiJ_P0025599 Tcf3 protein_coding protein_coding MGP_CASTEiJ_T0025600.1 MGP_CASTEiJ_G0016833.1 mouse_genomes_project 10 80627011 80652393 - MGP_CASTEiJ_P0025600 Tcf3 protein_coding protein_coding MGP_CASTEiJ_T0025601.1 MGP_CASTEiJ_G0016833.1 mouse_genomes_project 10 80627072 80652367 - MGP_CASTEiJ_P0025601 Tcf3 protein_coding protein_coding MGP_CASTEiJ_T0025602.1 MGP_CASTEiJ_G0016833.1 mouse_genomes_project 10 80627072 80652367 - MGP_CASTEiJ_P0025602 Tcf3 protein_coding protein_coding MGP_CASTEiJ_T0025603.1 MGP_CASTEiJ_G0016833.1 mouse_genomes_project 10 80627084 80649637 - MGP_CASTEiJ_P0025603 Tcf3 protein_coding protein_coding MGP_CASTEiJ_T0025604.1 MGP_CASTEiJ_G0016833.1 mouse_genomes_project 10 80627090 80652381 - MGP_CASTEiJ_P0025604 Tcf3 protein_coding protein_coding MGP_CASTEiJ_T0025605.1 MGP_CASTEiJ_G0016833.1 mouse_genomes_project 10 80627090 80652381 - MGP_CASTEiJ_P0025605 Tcf3 protein_coding protein_coding MGP_CASTEiJ_T0025606.1 MGP_CASTEiJ_G0016833.1 mouse_genomes_project 10 80627517 80649707 - MGP_CASTEiJ_P0025606 Tcf3 protein_coding protein_coding MGP_CASTEiJ_T0025607.1 MGP_CASTEiJ_G0016833.1 mouse_genomes_project 10 80627517 80649610 - MGP_CASTEiJ_P0025607 Tcf3 protein_coding protein_coding MGP_CASTEiJ_T0025608.1 MGP_CASTEiJ_G0016833.1 mouse_genomes_project 10 80630079 80632902 - Tcf3 protein_coding processed_transcript MGP_CASTEiJ_T0025609.1 MGP_CASTEiJ_G0016833.1 mouse_genomes_project 10 80632657 80633703 - Tcf3 protein_coding retained_intron MGP_CASTEiJ_T0025610.1 MGP_CASTEiJ_G0016833.1 mouse_genomes_project 10 80637497 80639241 - MGP_CASTEiJ_P0025610 Tcf3 protein_coding protein_coding MGP_CASTEiJ_T0100370.1 MGP_CASTEiJ_G0037283.1 mouse_genomes_project 10 45584835 45584966 - Gm23481 snoRNA snoRNA MGP_CASTEiJ_T0025849.1 MGP_CASTEiJ_G0016897.1 mouse_genomes_project 10 81927124 81936948 - MGP_CASTEiJ_P0025849 Tle6 protein_coding protein_coding MGP_CASTEiJ_T0025850.1 MGP_CASTEiJ_G0016897.1 mouse_genomes_project 10 81927131 81933779 - Tle6 protein_coding processed_transcript MGP_CASTEiJ_T0025851.1 MGP_CASTEiJ_G0016897.1 mouse_genomes_project 10 81927132 81928938 - Tle6 protein_coding processed_transcript MGP_CASTEiJ_T0025852.1 MGP_CASTEiJ_G0016897.1 mouse_genomes_project 10 81927132 81931638 - Tle6 protein_coding retained_intron MGP_CASTEiJ_T0025853.1 MGP_CASTEiJ_G0016897.1 mouse_genomes_project 10 81927134 81933534 - Tle6 protein_coding processed_transcript MGP_CASTEiJ_T0025854.1 MGP_CASTEiJ_G0016897.1 mouse_genomes_project 10 81927360 81929041 - Tle6 protein_coding retained_intron MGP_CASTEiJ_T0025855.1 MGP_CASTEiJ_G0016897.1 mouse_genomes_project 10 81930141 81931470 - Tle6 protein_coding retained_intron MGP_CASTEiJ_T0025856.1 MGP_CASTEiJ_G0016897.1 mouse_genomes_project 10 81930461 81932032 - Tle6 protein_coding retained_intron MGP_CASTEiJ_T0025857.1 MGP_CASTEiJ_G0016897.1 mouse_genomes_project 10 81931434 81933527 - Tle6 protein_coding processed_transcript MGP_CASTEiJ_T0025858.1 MGP_CASTEiJ_G0016897.1 mouse_genomes_project 10 81931454 81933520 - Tle6 protein_coding processed_transcript MGP_CASTEiJ_T0025859.1 MGP_CASTEiJ_G0016897.1 mouse_genomes_project 10 81932176 81933556 - Tle6 protein_coding processed_transcript MGP_CASTEiJ_T0025860.1 MGP_CASTEiJ_G0016897.1 mouse_genomes_project 10 81932216 81937069 - MGP_CASTEiJ_P0025860 Tle6 protein_coding protein_coding MGP_CASTEiJ_T0025861.1 MGP_CASTEiJ_G0016897.1 mouse_genomes_project 10 81932219 81937286 - MGP_CASTEiJ_P0025861 Tle6 protein_coding protein_coding MGP_CASTEiJ_T0026707.1 MGP_CASTEiJ_G0017141.1 mouse_genomes_project 10 130196831 130203054 + MGP_CASTEiJ_P0026707 Arhgap9 protein_coding protein_coding MGP_CASTEiJ_T0101967.1 MGP_CASTEiJ_G0038692.1 mouse_genomes_project 10 107786719 107787185 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0024202.1 MGP_CASTEiJ_G0016463.1 mouse_genomes_project 10 29912193 31106359 - MGP_CASTEiJ_P0024202 Nkain2 protein_coding protein_coding MGP_CASTEiJ_T0024203.1 MGP_CASTEiJ_G0016463.1 mouse_genomes_project 10 30531505 30625575 - MGP_CASTEiJ_P0024203 Nkain2 protein_coding protein_coding MGP_CASTEiJ_T0024204.1 MGP_CASTEiJ_G0016463.1 mouse_genomes_project 10 31105802 31106360 - MGP_CASTEiJ_P0024204 Nkain2 protein_coding protein_coding MGP_CASTEiJ_T0025312.1 MGP_CASTEiJ_G0016756.1 mouse_genomes_project 10 78591793 78619903 - MGP_CASTEiJ_P0025312 Pdxk protein_coding protein_coding MGP_CASTEiJ_T0100395.1 MGP_CASTEiJ_G0037308.1 mouse_genomes_project 10 112346298 112346426 + Gm23698 snoRNA snoRNA MGP_CASTEiJ_T0024084.1 MGP_CASTEiJ_G0016419.1 mouse_genomes_project 10 21688556 21689588 + MGP_CASTEiJ_P0024084 Taar3 protein_coding protein_coding MGP_CASTEiJ_T0012052.1 MGP_CASTEiJ_G0010215.1 mouse_genomes_project 10 24622277 24623283 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002962.1 MGP_CASTEiJ_G0002775.1 mouse_genomes_project 10 81908757 81912084 - Gm15917 antisense antisense MGP_CASTEiJ_T0025122.1 MGP_CASTEiJ_G0016704.1 mouse_genomes_project 10 75856890 75859034 + MGP_CASTEiJ_P0025122 Chchd10 protein_coding protein_coding MGP_CASTEiJ_T0002913.1 MGP_CASTEiJ_G0002737.1 mouse_genomes_project 10 23420261 23556995 + Gm29571 antisense antisense MGP_CASTEiJ_T0024184.1 MGP_CASTEiJ_G0016454.1 mouse_genomes_project 10 28313836 28318344 - MGP_CASTEiJ_P0024184 Cenpw protein_coding protein_coding MGP_CASTEiJ_T0012069.1 MGP_CASTEiJ_G0010232.1 mouse_genomes_project 10 56641984 56642539 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024231.1 MGP_CASTEiJ_G0016481.1 mouse_genomes_project 10 32772282 32912532 + MGP_CASTEiJ_P0024231 Frk protein_coding protein_coding MGP_CASTEiJ_T0024232.1 MGP_CASTEiJ_G0016481.1 mouse_genomes_project 10 32772282 32912532 + MGP_CASTEiJ_P0024232 Frk protein_coding protein_coding MGP_CASTEiJ_T0026446.1 MGP_CASTEiJ_G0017062.1 mouse_genomes_project 10 117258352 117280167 - MGP_CASTEiJ_P0026446 Tmem19 protein_coding protein_coding MGP_CASTEiJ_T0100362.1 MGP_CASTEiJ_G0037275.1 mouse_genomes_project 10 35197047 35197194 - Gm22554 snoRNA snoRNA MGP_CASTEiJ_T0024755.1 MGP_CASTEiJ_G0016632.1 mouse_genomes_project 10 61566233 61602422 - MGP_CASTEiJ_P0024755 Srgn protein_coding protein_coding MGP_CASTEiJ_T0024756.1 MGP_CASTEiJ_G0016632.1 mouse_genomes_project 10 61566828 61582209 - MGP_CASTEiJ_P0024756 Srgn protein_coding protein_coding MGP_CASTEiJ_T0024757.1 MGP_CASTEiJ_G0016632.1 mouse_genomes_project 10 61567084 61582392 - MGP_CASTEiJ_P0024757 Srgn protein_coding protein_coding MGP_CASTEiJ_T0024758.1 MGP_CASTEiJ_G0016632.1 mouse_genomes_project 10 61570736 61602396 - MGP_CASTEiJ_P0024758 Srgn protein_coding protein_coding MGP_CASTEiJ_T0024759.1 MGP_CASTEiJ_G0016632.1 mouse_genomes_project 10 61582129 61582552 - MGP_CASTEiJ_P0024759 Srgn protein_coding protein_coding MGP_CASTEiJ_T0024760.1 MGP_CASTEiJ_G0016632.1 mouse_genomes_project 10 61582195 61602396 - Srgn protein_coding processed_transcript MGP_CASTEiJ_T0100347.1 MGP_CASTEiJ_G0037260.1 mouse_genomes_project 10 7868992 7869123 + Gm23601 snoRNA snoRNA MGP_CASTEiJ_T0009390.1 MGP_CASTEiJ_G0007578.1 mouse_genomes_project 10 129513242 129513352 - Mir378d miRNA miRNA MGP_CASTEiJ_T0099168.1 MGP_CASTEiJ_G0036081.1 mouse_genomes_project 10 43475253 43475341 - Gm22087 snRNA snRNA MGP_CASTEiJ_T0010940.1 MGP_CASTEiJ_G0009128.1 mouse_genomes_project 10 41194075 41194399 - Gm25277 misc_RNA misc_RNA MGP_CASTEiJ_T0099182.1 MGP_CASTEiJ_G0036095.1 mouse_genomes_project 10 75510103 75510216 - Gm26402 snRNA snRNA MGP_CASTEiJ_T0025296.1 MGP_CASTEiJ_G0016750.1 mouse_genomes_project 10 78305137 78312811 - MGP_CASTEiJ_P0025296 D10Jhu81e protein_coding protein_coding MGP_CASTEiJ_T0024212.1 MGP_CASTEiJ_G0016469.1 mouse_genomes_project 10 32186277 32218238 - MGP_CASTEiJ_P0024212 Zufsp protein_coding unknown_likely_coding MGP_CASTEiJ_T0024213.1 MGP_CASTEiJ_G0016469.1 mouse_genomes_project 10 32194102 32218474 - MGP_CASTEiJ_P0024213 Zufsp protein_coding protein_coding MGP_CASTEiJ_T0026313.1 MGP_CASTEiJ_G0017016.1 mouse_genomes_project 10 100513421 100516725 + MGP_CASTEiJ_P0026313 Gad1-ps protein_coding protein_coding MGP_CASTEiJ_T0025098.1 MGP_CASTEiJ_G0016696.1 mouse_genomes_project 10 75677817 75685098 - MGP_CASTEiJ_P0025098 Gstt3 protein_coding protein_coding MGP_CASTEiJ_T0025099.1 MGP_CASTEiJ_G0016696.1 mouse_genomes_project 10 75678502 75680976 - Gstt3 protein_coding processed_transcript MGP_CASTEiJ_T0025100.1 MGP_CASTEiJ_G0016696.1 mouse_genomes_project 10 75678622 75684702 - MGP_CASTEiJ_P0025100 Gstt3 protein_coding protein_coding MGP_CASTEiJ_T0025101.1 MGP_CASTEiJ_G0016696.1 mouse_genomes_project 10 75679102 75680581 - MGP_CASTEiJ_P0025101 Gstt3 protein_coding protein_coding MGP_CASTEiJ_T0025102.1 MGP_CASTEiJ_G0016696.1 mouse_genomes_project 10 75680470 75684734 - MGP_CASTEiJ_P0025102 Gstt3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025125.1 MGP_CASTEiJ_G0016706.1 mouse_genomes_project 10 75878016 75941273 + MGP_CASTEiJ_P0025125 Gm5134 protein_coding protein_coding MGP_CASTEiJ_T0025126.1 MGP_CASTEiJ_G0016706.1 mouse_genomes_project 10 75904184 75930060 + Gm5134 protein_coding retained_intron MGP_CASTEiJ_T0026373.1 MGP_CASTEiJ_G0017033.1 mouse_genomes_project 10 108259766 108459231 - MGP_CASTEiJ_P0026373 Acss3 protein_coding protein_coding MGP_CASTEiJ_T0026374.1 MGP_CASTEiJ_G0017033.1 mouse_genomes_project 10 108292432 108459231 - MGP_CASTEiJ_P0026374 Acss3 protein_coding protein_coding MGP_CASTEiJ_T0026375.1 MGP_CASTEiJ_G0017033.1 mouse_genomes_project 10 108438034 108459212 - Acss3 protein_coding processed_transcript MGP_CASTEiJ_T0023787.1 MGP_CASTEiJ_G0016336.1 mouse_genomes_project 10 4586859 4600194 - MGP_CASTEiJ_P0023787 Ulbp1 protein_coding protein_coding MGP_CASTEiJ_T0026307.1 MGP_CASTEiJ_G0017013.1 mouse_genomes_project 10 100142011 100147100 + MGP_CASTEiJ_P0026307 Galnt4 protein_coding protein_coding MGP_CASTEiJ_T0025886.1 MGP_CASTEiJ_G0016902.1 mouse_genomes_project 10 82069630 82072877 + MGP_CASTEiJ_P0025886 Zfp433 protein_coding protein_coding MGP_CASTEiJ_T0025887.1 MGP_CASTEiJ_G0016902.1 mouse_genomes_project 10 82072385 82077610 + Zfp433 protein_coding processed_transcript MGP_CASTEiJ_T0002951.1 MGP_CASTEiJ_G0002767.1 mouse_genomes_project 10 80583613 80584148 + Gm15123 antisense antisense MGP_CASTEiJ_T0026101.1 MGP_CASTEiJ_G0016961.1 mouse_genomes_project 10 89180348 89185390 + MGP_CASTEiJ_P0026101 Arl1 protein_coding protein_coding MGP_CASTEiJ_T0026102.1 MGP_CASTEiJ_G0016961.1 mouse_genomes_project 10 89180558 89196941 + MGP_CASTEiJ_P0026102 Arl1 protein_coding protein_coding MGP_CASTEiJ_T0026103.1 MGP_CASTEiJ_G0016961.1 mouse_genomes_project 10 89181052 89194966 + MGP_CASTEiJ_P0026103 Arl1 protein_coding protein_coding MGP_CASTEiJ_T0025451.1 MGP_CASTEiJ_G0016805.1 mouse_genomes_project 10 80150759 80154607 - Tmem259 protein_coding retained_intron MGP_CASTEiJ_T0025452.1 MGP_CASTEiJ_G0016805.1 mouse_genomes_project 10 80151701 80154774 - Tmem259 protein_coding retained_intron MGP_CASTEiJ_T0025453.1 MGP_CASTEiJ_G0016805.1 mouse_genomes_project 10 80152945 80161062 - MGP_CASTEiJ_P0025453 Tmem259 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025454.1 MGP_CASTEiJ_G0016805.1 mouse_genomes_project 10 80152950 80161149 - MGP_CASTEiJ_P0025454 Tmem259 protein_coding protein_coding MGP_CASTEiJ_T0025455.1 MGP_CASTEiJ_G0016805.1 mouse_genomes_project 10 80153190 80161003 - MGP_CASTEiJ_P0025455 Tmem259 protein_coding protein_coding MGP_CASTEiJ_T0025456.1 MGP_CASTEiJ_G0016805.1 mouse_genomes_project 10 80153796 80154610 - Tmem259 protein_coding retained_intron MGP_CASTEiJ_T0026360.1 MGP_CASTEiJ_G0017029.1 mouse_genomes_project 10 106428304 106486876 - Tmtc2 protein_coding processed_transcript MGP_CASTEiJ_T0026361.1 MGP_CASTEiJ_G0017029.1 mouse_genomes_project 10 106428304 106862608 - MGP_CASTEiJ_P0026361 Tmtc2 protein_coding protein_coding MGP_CASTEiJ_T0026362.1 MGP_CASTEiJ_G0017029.1 mouse_genomes_project 10 106430144 106486861 - Tmtc2 protein_coding processed_transcript MGP_CASTEiJ_T0026363.1 MGP_CASTEiJ_G0017029.1 mouse_genomes_project 10 106430303 106440397 - Tmtc2 protein_coding processed_transcript MGP_CASTEiJ_T0026364.1 MGP_CASTEiJ_G0017029.1 mouse_genomes_project 10 106526110 106862624 - Tmtc2 protein_coding retained_intron MGP_CASTEiJ_T0026365.1 MGP_CASTEiJ_G0017029.1 mouse_genomes_project 10 106681711 106821458 - Tmtc2 protein_coding processed_transcript MGP_CASTEiJ_T0023983.1 MGP_CASTEiJ_G0016383.1 mouse_genomes_project 10 16044865 16211565 - MGP_CASTEiJ_P0023983 Arfgef3 protein_coding protein_coding MGP_CASTEiJ_T0023830.1 MGP_CASTEiJ_G0016346.1 mouse_genomes_project 10 5351336 5662227 - MGP_CASTEiJ_P0023830 Ust protein_coding protein_coding MGP_CASTEiJ_T0024769.1 MGP_CASTEiJ_G0016634.1 mouse_genomes_project 10 61663163 61685945 - MGP_CASTEiJ_P0024769 Ddx21 protein_coding protein_coding MGP_CASTEiJ_T0025161.1 MGP_CASTEiJ_G0016718.1 mouse_genomes_project 10 76566124 76581032 + MGP_CASTEiJ_P0025161 Ftcd protein_coding unknown_likely_coding MGP_CASTEiJ_T0025162.1 MGP_CASTEiJ_G0016718.1 mouse_genomes_project 10 76566124 76581281 + MGP_CASTEiJ_P0025162 Ftcd protein_coding protein_coding MGP_CASTEiJ_T0025163.1 MGP_CASTEiJ_G0016718.1 mouse_genomes_project 10 76566128 76582060 + Ftcd protein_coding retained_intron MGP_CASTEiJ_T0025164.1 MGP_CASTEiJ_G0016718.1 mouse_genomes_project 10 76578862 76580296 + Ftcd protein_coding processed_transcript MGP_CASTEiJ_T0009328.1 MGP_CASTEiJ_G0007516.1 mouse_genomes_project 10 22749525 22749595 + Mir6905 miRNA miRNA MGP_CASTEiJ_T0101972.1 MGP_CASTEiJ_G0038697.1 mouse_genomes_project 10 132674627 132675390 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0025329.1 MGP_CASTEiJ_G0016768.1 mouse_genomes_project 10 79068053 79094400 + MGP_CASTEiJ_P0025329 Olfr1353 protein_coding protein_coding MGP_CASTEiJ_T0025330.1 MGP_CASTEiJ_G0016768.1 mouse_genomes_project 10 79068056 79093722 + MGP_CASTEiJ_P0025330 Olfr1353 protein_coding protein_coding MGP_CASTEiJ_T0025331.1 MGP_CASTEiJ_G0016768.1 mouse_genomes_project 10 79093385 79094400 + MGP_CASTEiJ_P0025331 Olfr1353 protein_coding protein_coding MGP_CASTEiJ_T0025353.1 MGP_CASTEiJ_G0016776.1 mouse_genomes_project 10 79710753 79721519 - MGP_CASTEiJ_P0025353 Theg protein_coding protein_coding MGP_CASTEiJ_T0025354.1 MGP_CASTEiJ_G0016776.1 mouse_genomes_project 10 79710880 79714550 - Theg protein_coding retained_intron MGP_CASTEiJ_T0025355.1 MGP_CASTEiJ_G0016776.1 mouse_genomes_project 10 79710880 79721714 - MGP_CASTEiJ_P0025355 Theg protein_coding protein_coding MGP_CASTEiJ_T0023785.1 MGP_CASTEiJ_G0016335.1 mouse_genomes_project 10 4243885 4260266 - MGP_CASTEiJ_P0023785 Cnksr3 protein_coding protein_coding MGP_CASTEiJ_T0023786.1 MGP_CASTEiJ_G0016335.1 mouse_genomes_project 10 4243885 4344283 - MGP_CASTEiJ_P0023786 Cnksr3 protein_coding protein_coding MGP_CASTEiJ_T0012042.1 MGP_CASTEiJ_G0010205.1 mouse_genomes_project 10 7575637 7576854 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002931.1 MGP_CASTEiJ_G0002751.1 mouse_genomes_project 10 61402452 61413565 + Hk1os antisense antisense MGP_CASTEiJ_T0002932.1 MGP_CASTEiJ_G0002751.1 mouse_genomes_project 10 61402803 61414230 + Hk1os antisense antisense MGP_CASTEiJ_T0002933.1 MGP_CASTEiJ_G0002751.1 mouse_genomes_project 10 61402818 61427000 + Hk1os antisense antisense MGP_CASTEiJ_T0026803.1 MGP_CASTEiJ_G0017171.1 mouse_genomes_project 10 131082918 131124665 + MGP_CASTEiJ_P0026803 Baz2a protein_coding protein_coding MGP_CASTEiJ_T0026804.1 MGP_CASTEiJ_G0017171.1 mouse_genomes_project 10 131087094 131122119 + MGP_CASTEiJ_P0026804 Baz2a protein_coding unknown_likely_coding MGP_CASTEiJ_T0002990.1 MGP_CASTEiJ_G0002794.1 mouse_genomes_project 10 121690512 121719317 - Grip1os3 antisense antisense MGP_CASTEiJ_T0002991.1 MGP_CASTEiJ_G0002794.1 mouse_genomes_project 10 121700360 121719267 - Grip1os3 antisense antisense MGP_CASTEiJ_T0002992.1 MGP_CASTEiJ_G0002794.1 mouse_genomes_project 10 121700360 121719866 - Grip1os3 antisense antisense MGP_CASTEiJ_T0024098.1 MGP_CASTEiJ_G0016431.1 mouse_genomes_project 10 22423888 22428687 + MGP_CASTEiJ_P0024098 Ctgf protein_coding unknown_likely_coding MGP_CASTEiJ_T0024099.1 MGP_CASTEiJ_G0016431.1 mouse_genomes_project 10 22424107 22428215 + MGP_CASTEiJ_P0024099 Ctgf protein_coding protein_coding MGP_CASTEiJ_T0024100.1 MGP_CASTEiJ_G0016431.1 mouse_genomes_project 10 22424161 22424752 + MGP_CASTEiJ_P0024100 Ctgf protein_coding protein_coding MGP_CASTEiJ_T0025611.1 MGP_CASTEiJ_G0016834.1 mouse_genomes_project 10 80724642 80748868 + MGP_CASTEiJ_P0025611 Onecut3 protein_coding protein_coding MGP_CASTEiJ_T0024429.1 MGP_CASTEiJ_G0016533.1 mouse_genomes_project 10 42322030 42337884 - MGP_CASTEiJ_P0024429 1700021F05Rik protein_coding protein_coding MGP_CASTEiJ_T0024430.1 MGP_CASTEiJ_G0016533.1 mouse_genomes_project 10 42322042 42337858 - MGP_CASTEiJ_P0024430 1700021F05Rik protein_coding protein_coding MGP_CASTEiJ_T0024431.1 MGP_CASTEiJ_G0016533.1 mouse_genomes_project 10 42322068 42322753 - 1700021F05Rik protein_coding processed_transcript MGP_CASTEiJ_T0024432.1 MGP_CASTEiJ_G0016533.1 mouse_genomes_project 10 42330092 42337884 - 1700021F05Rik protein_coding processed_transcript MGP_CASTEiJ_T0100367.1 MGP_CASTEiJ_G0037280.1 mouse_genomes_project 10 38808797 38809010 + Rnu3a snoRNA snoRNA MGP_CASTEiJ_T0012060.1 MGP_CASTEiJ_G0010223.1 mouse_genomes_project 10 41122297 41122474 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006001.1 MGP_CASTEiJ_G0005022.1 mouse_genomes_project 10 130052244 130059642 + F420014N23Rik lincRNA lincRNA MGP_CASTEiJ_T0025867.1 MGP_CASTEiJ_G0016899.1 mouse_genomes_project 10 81965833 81971368 - MGP_CASTEiJ_P0025867 Sirt6 protein_coding protein_coding MGP_CASTEiJ_T0025868.1 MGP_CASTEiJ_G0016899.1 mouse_genomes_project 10 81965835 81971845 - MGP_CASTEiJ_P0025868 Sirt6 protein_coding protein_coding MGP_CASTEiJ_T0025869.1 MGP_CASTEiJ_G0016899.1 mouse_genomes_project 10 81969574 81971614 - Sirt6 protein_coding retained_intron MGP_CASTEiJ_T0025870.1 MGP_CASTEiJ_G0016899.1 mouse_genomes_project 10 81969826 81971305 - MGP_CASTEiJ_P0025870 Sirt6 protein_coding protein_coding MGP_CASTEiJ_T0024483.1 MGP_CASTEiJ_G0016555.1 mouse_genomes_project 10 51193201 51291478 + MGP_CASTEiJ_P0024483 Dcbld1 protein_coding protein_coding MGP_CASTEiJ_T0024484.1 MGP_CASTEiJ_G0016555.1 mouse_genomes_project 10 51193215 51256052 + Dcbld1 protein_coding retained_intron MGP_CASTEiJ_T0024485.1 MGP_CASTEiJ_G0016555.1 mouse_genomes_project 10 51193219 51291480 + MGP_CASTEiJ_P0024485 Dcbld1 protein_coding protein_coding MGP_CASTEiJ_T0025727.1 MGP_CASTEiJ_G0016871.1 mouse_genomes_project 10 81478177 81490751 + MGP_CASTEiJ_P0025727 Dapk3 protein_coding protein_coding MGP_CASTEiJ_T0012105.1 MGP_CASTEiJ_G0010268.1 mouse_genomes_project 10 130184905 130185905 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024194.1 MGP_CASTEiJ_G0016460.1 mouse_genomes_project 10 29474090 29489542 + MGP_CASTEiJ_P0024194 Hddc2 protein_coding protein_coding MGP_CASTEiJ_T0024195.1 MGP_CASTEiJ_G0016460.1 mouse_genomes_project 10 29474113 29477836 + Hddc2 protein_coding retained_intron MGP_CASTEiJ_T0024196.1 MGP_CASTEiJ_G0016460.1 mouse_genomes_project 10 29474115 29478646 + Hddc2 protein_coding retained_intron MGP_CASTEiJ_T0024197.1 MGP_CASTEiJ_G0016460.1 mouse_genomes_project 10 29474180 29489522 + MGP_CASTEiJ_P0024197 Hddc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024198.1 MGP_CASTEiJ_G0016460.1 mouse_genomes_project 10 29480969 29489540 + Hddc2 protein_coding retained_intron MGP_CASTEiJ_T0016386.1 MGP_CASTEiJ_G0014449.1 mouse_genomes_project 10 40199794 40208231 + 5730435O14Rik processed_transcript antisense MGP_CASTEiJ_T0016387.1 MGP_CASTEiJ_G0014449.1 mouse_genomes_project 10 40207306 40208223 + 5730435O14Rik processed_transcript retained_intron MGP_CASTEiJ_T0026876.1 MGP_CASTEiJ_G0017196.1 mouse_genomes_project 10 131604635 131629520 - MGP_CASTEiJ_P0026876 Erbb3 protein_coding protein_coding MGP_CASTEiJ_T0024061.1 MGP_CASTEiJ_G0016407.1 mouse_genomes_project 10 19906406 19916978 + MGP_CASTEiJ_P0024061 protein_coding protein_coding MGP_CASTEiJ_T0024062.1 MGP_CASTEiJ_G0016407.1 mouse_genomes_project 10 19906724 19916978 + MGP_CASTEiJ_P0024062 protein_coding protein_coding MGP_CASTEiJ_T0100343.1 MGP_CASTEiJ_G0037256.1 mouse_genomes_project 10 1189008 1189142 + Gm25369 snoRNA snoRNA MGP_CASTEiJ_T0100364.1 MGP_CASTEiJ_G0037277.1 mouse_genomes_project 10 36680402 36680470 + Gm24297 snoRNA snoRNA MGP_CASTEiJ_T0016364.1 MGP_CASTEiJ_G0014444.1 mouse_genomes_project 10 4862849 4882595 - Gm20470 processed_transcript processed_transcript MGP_CASTEiJ_T0024317.1 MGP_CASTEiJ_G0016510.1 mouse_genomes_project 10 39927285 40055355 + MGP_CASTEiJ_P0024317 Ak9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024318.1 MGP_CASTEiJ_G0016510.1 mouse_genomes_project 10 39927545 39962825 + MGP_CASTEiJ_P0024318 Ak9 protein_coding protein_coding MGP_CASTEiJ_T0024319.1 MGP_CASTEiJ_G0016510.1 mouse_genomes_project 10 39966513 40057252 + MGP_CASTEiJ_P0024319 Ak9 protein_coding protein_coding MGP_CASTEiJ_T0025995.1 MGP_CASTEiJ_G0016936.1 mouse_genomes_project 10 86209379 86211407 + MGP_CASTEiJ_P0025995 Ascl4 protein_coding protein_coding MGP_CASTEiJ_T0025996.1 MGP_CASTEiJ_G0016936.1 mouse_genomes_project 10 86210470 86233882 + MGP_CASTEiJ_P0025996 Ascl4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0100385.1 MGP_CASTEiJ_G0037298.1 mouse_genomes_project 10 93353359 93353502 - Gm24241 snoRNA snoRNA MGP_CASTEiJ_T0024140.1 MGP_CASTEiJ_G0016442.1 mouse_genomes_project 10 24193729 24301857 - MGP_CASTEiJ_P0024140 L3mbtl3 protein_coding protein_coding MGP_CASTEiJ_T0024141.1 MGP_CASTEiJ_G0016442.1 mouse_genomes_project 10 24193732 24301857 - MGP_CASTEiJ_P0024141 L3mbtl3 protein_coding protein_coding MGP_CASTEiJ_T0024142.1 MGP_CASTEiJ_G0016442.1 mouse_genomes_project 10 24194713 24303069 - MGP_CASTEiJ_P0024142 L3mbtl3 protein_coding protein_coding MGP_CASTEiJ_T0024865.1 MGP_CASTEiJ_G0016659.1 mouse_genomes_project 10 67342508 67411776 + MGP_CASTEiJ_P0024865 Rtkn2 protein_coding protein_coding MGP_CASTEiJ_T0024866.1 MGP_CASTEiJ_G0016659.1 mouse_genomes_project 10 67342536 67411772 + MGP_CASTEiJ_P0024866 Rtkn2 protein_coding protein_coding MGP_CASTEiJ_T0024867.1 MGP_CASTEiJ_G0016659.1 mouse_genomes_project 10 67342543 67427607 + MGP_CASTEiJ_P0024867 Rtkn2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024868.1 MGP_CASTEiJ_G0016659.1 mouse_genomes_project 10 67342636 67427610 + MGP_CASTEiJ_P0024868 Rtkn2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024869.1 MGP_CASTEiJ_G0016659.1 mouse_genomes_project 10 67342653 67410205 + MGP_CASTEiJ_P0024869 Rtkn2 protein_coding protein_coding MGP_CASTEiJ_T0024870.1 MGP_CASTEiJ_G0016659.1 mouse_genomes_project 10 67411875 67418942 + Rtkn2 protein_coding processed_transcript MGP_CASTEiJ_T0025645.1 MGP_CASTEiJ_G0016846.1 mouse_genomes_project 10 80953639 80993963 - MGP_CASTEiJ_P0025645 Ap3d1 protein_coding protein_coding MGP_CASTEiJ_T0026889.1 MGP_CASTEiJ_G0017201.1 mouse_genomes_project 10 131756421 131763543 - MGP_CASTEiJ_P0026889 Cdk2 protein_coding protein_coding MGP_CASTEiJ_T0026890.1 MGP_CASTEiJ_G0017201.1 mouse_genomes_project 10 131756421 131763543 - MGP_CASTEiJ_P0026890 Cdk2 protein_coding protein_coding MGP_CASTEiJ_T0024949.1 MGP_CASTEiJ_G0016669.1 mouse_genomes_project 10 70009591 70133373 + MGP_CASTEiJ_P0024949 Fam13c protein_coding protein_coding MGP_CASTEiJ_T0024950.1 MGP_CASTEiJ_G0016669.1 mouse_genomes_project 10 70009803 70133373 + MGP_CASTEiJ_P0024950 Fam13c protein_coding protein_coding MGP_CASTEiJ_T0024951.1 MGP_CASTEiJ_G0016669.1 mouse_genomes_project 10 70009849 70133375 + MGP_CASTEiJ_P0024951 Fam13c protein_coding protein_coding MGP_CASTEiJ_T0002994.1 MGP_CASTEiJ_G0002796.1 mouse_genomes_project 10 122034267 122051155 - Grip1os2 antisense antisense MGP_CASTEiJ_T0005905.1 MGP_CASTEiJ_G0004957.1 mouse_genomes_project 10 6008951 6011231 + Gm26674 lincRNA lincRNA MGP_CASTEiJ_T0099171.1 MGP_CASTEiJ_G0036084.1 mouse_genomes_project 10 45314479 45314586 + Gm25740 snRNA snRNA MGP_CASTEiJ_T0025958.1 MGP_CASTEiJ_G0016921.1 mouse_genomes_project 10 83912634 83952404 + MGP_CASTEiJ_P0025958 1500009L16Rik protein_coding protein_coding MGP_CASTEiJ_T0009383.1 MGP_CASTEiJ_G0007571.1 mouse_genomes_project 10 122788191 122788311 - Mir763 miRNA miRNA MGP_CASTEiJ_T0026940.1 MGP_CASTEiJ_G0017231.1 mouse_genomes_project 10 132508102 132509041 + MGP_CASTEiJ_P0026940 Gm44444 protein_coding protein_coding MGP_CASTEiJ_T0100407.1 MGP_CASTEiJ_G0037320.1 mouse_genomes_project 10 132789241 132789365 + Gm24717 snoRNA snoRNA MGP_CASTEiJ_T0026411.1 MGP_CASTEiJ_G0017044.1 mouse_genomes_project 10 112469016 112493909 + MGP_CASTEiJ_P0026411 Csrp2 protein_coding protein_coding MGP_CASTEiJ_T0026598.1 MGP_CASTEiJ_G0017106.1 mouse_genomes_project 10 124015644 124055445 - MGP_CASTEiJ_P0026598 Tbk1 protein_coding protein_coding MGP_CASTEiJ_T0100382.1 MGP_CASTEiJ_G0037295.1 mouse_genomes_project 10 78039737 78039791 - Gm22871 snoRNA snoRNA MGP_CASTEiJ_T0000799.1 MGP_CASTEiJ_G0000739.1 mouse_genomes_project 10 123110863 123112953 + TEC TEC MGP_CASTEiJ_T0005945.1 MGP_CASTEiJ_G0004988.1 mouse_genomes_project 10 66197883 66200570 + Gm26576 lincRNA lincRNA MGP_CASTEiJ_T0023808.1 MGP_CASTEiJ_G0016341.1 mouse_genomes_project 10 4834866 4884638 + MGP_CASTEiJ_P0023808 Katna1 protein_coding protein_coding MGP_CASTEiJ_T0023809.1 MGP_CASTEiJ_G0016341.1 mouse_genomes_project 10 4834866 4884639 + MGP_CASTEiJ_P0023809 Katna1 protein_coding protein_coding MGP_CASTEiJ_T0023810.1 MGP_CASTEiJ_G0016341.1 mouse_genomes_project 10 4834874 4873944 + MGP_CASTEiJ_P0023810 Katna1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023811.1 MGP_CASTEiJ_G0016341.1 mouse_genomes_project 10 4868071 4881731 + Katna1 protein_coding retained_intron MGP_CASTEiJ_T0023812.1 MGP_CASTEiJ_G0016341.1 mouse_genomes_project 10 4881269 4884553 + MGP_CASTEiJ_P0023812 Katna1 protein_coding protein_coding MGP_CASTEiJ_T0023813.1 MGP_CASTEiJ_G0016341.1 mouse_genomes_project 10 4882728 4884637 + MGP_CASTEiJ_P0023813 Katna1 protein_coding protein_coding MGP_CASTEiJ_T0101502.1 MGP_CASTEiJ_G0038404.1 mouse_genomes_project 10 7817281 7827564 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101503.1 MGP_CASTEiJ_G0038404.1 mouse_genomes_project 10 7824287 7825284 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0025888.1 MGP_CASTEiJ_G0016903.1 mouse_genomes_project 10 82102622 82123639 + MGP_CASTEiJ_P0025888 Zfp873 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025889.1 MGP_CASTEiJ_G0016903.1 mouse_genomes_project 10 82114612 82117534 + MGP_CASTEiJ_P0025889 Zfp873 protein_coding protein_coding MGP_CASTEiJ_T0024297.1 MGP_CASTEiJ_G0016499.1 mouse_genomes_project 10 38773660 38795137 - MGP_CASTEiJ_P0024297 Rpf2 protein_coding protein_coding MGP_CASTEiJ_T0024298.1 MGP_CASTEiJ_G0016499.1 mouse_genomes_project 10 38773841 38795171 - MGP_CASTEiJ_P0024298 Rpf2 protein_coding protein_coding MGP_CASTEiJ_T0024299.1 MGP_CASTEiJ_G0016499.1 mouse_genomes_project 10 38774095 38778184 - Rpf2 protein_coding processed_transcript MGP_CASTEiJ_T0024300.1 MGP_CASTEiJ_G0016499.1 mouse_genomes_project 10 38774230 38795138 - MGP_CASTEiJ_P0024300 Rpf2 protein_coding protein_coding MGP_CASTEiJ_T0024301.1 MGP_CASTEiJ_G0016499.1 mouse_genomes_project 10 38774305 38795162 - MGP_CASTEiJ_P0024301 Rpf2 protein_coding protein_coding MGP_CASTEiJ_T0024302.1 MGP_CASTEiJ_G0016499.1 mouse_genomes_project 10 38775753 38795128 - MGP_CASTEiJ_P0024302 Rpf2 protein_coding protein_coding MGP_CASTEiJ_T0026919.1 MGP_CASTEiJ_G0017214.1 mouse_genomes_project 10 132015341 132040020 + MGP_CASTEiJ_P0026919 Itga7 protein_coding protein_coding MGP_CASTEiJ_T0012058.1 MGP_CASTEiJ_G0010221.1 mouse_genomes_project 10 38432149 38432746 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024681.1 MGP_CASTEiJ_G0016611.1 mouse_genomes_project 10 60375978 60383194 + MGP_CASTEiJ_P0024681 Nodal protein_coding protein_coding MGP_CASTEiJ_T0026295.1 MGP_CASTEiJ_G0017005.1 mouse_genomes_project 10 98550560 98557820 + MGP_CASTEiJ_P0026295 Lum protein_coding protein_coding MGP_CASTEiJ_T0024584.1 MGP_CASTEiJ_G0016592.1 mouse_genomes_project 10 58500798 58656316 + MGP_CASTEiJ_P0024584 Micu1 protein_coding protein_coding MGP_CASTEiJ_T0024585.1 MGP_CASTEiJ_G0016592.1 mouse_genomes_project 10 58500884 58542833 + Micu1 protein_coding retained_intron MGP_CASTEiJ_T0024586.1 MGP_CASTEiJ_G0016592.1 mouse_genomes_project 10 58500920 58656314 + MGP_CASTEiJ_P0024586 Micu1 protein_coding protein_coding MGP_CASTEiJ_T0024587.1 MGP_CASTEiJ_G0016592.1 mouse_genomes_project 10 58500939 58656314 + MGP_CASTEiJ_P0024587 Micu1 protein_coding protein_coding MGP_CASTEiJ_T0024588.1 MGP_CASTEiJ_G0016592.1 mouse_genomes_project 10 58500949 58656307 + MGP_CASTEiJ_P0024588 Micu1 protein_coding protein_coding MGP_CASTEiJ_T0024589.1 MGP_CASTEiJ_G0016592.1 mouse_genomes_project 10 58500970 58586372 + MGP_CASTEiJ_P0024589 Micu1 protein_coding protein_coding MGP_CASTEiJ_T0024590.1 MGP_CASTEiJ_G0016592.1 mouse_genomes_project 10 58500979 58549405 + Micu1 protein_coding retained_intron MGP_CASTEiJ_T0024591.1 MGP_CASTEiJ_G0016592.1 mouse_genomes_project 10 58538018 58538693 + Micu1 protein_coding processed_transcript MGP_CASTEiJ_T0024592.1 MGP_CASTEiJ_G0016592.1 mouse_genomes_project 10 58538708 58554669 + MGP_CASTEiJ_P0024592 Micu1 protein_coding protein_coding MGP_CASTEiJ_T0024593.1 MGP_CASTEiJ_G0016592.1 mouse_genomes_project 10 58559924 58586470 + Micu1 protein_coding processed_transcript MGP_CASTEiJ_T0024594.1 MGP_CASTEiJ_G0016592.1 mouse_genomes_project 10 58624148 58637425 + Micu1 protein_coding retained_intron MGP_CASTEiJ_T0024595.1 MGP_CASTEiJ_G0016592.1 mouse_genomes_project 10 58653715 58655583 + Micu1 protein_coding retained_intron MGP_CASTEiJ_T0025326.1 MGP_CASTEiJ_G0016767.1 mouse_genomes_project 10 79021609 79026249 + MGP_CASTEiJ_P0025326 protein_coding protein_coding MGP_CASTEiJ_T0025328.1 MGP_CASTEiJ_G0016767.1 mouse_genomes_project 10 79025190 79026249 + MGP_CASTEiJ_P0025328 protein_coding protein_coding MGP_CASTEiJ_T0098709.1 MGP_CASTEiJ_G0035640.1 mouse_genomes_project 10 2126065 2126347 - Gm25694 ribozyme ribozyme MGP_CASTEiJ_T0009364.1 MGP_CASTEiJ_G0007552.1 mouse_genomes_project 10 81829529 81829626 + Gm25595 miRNA miRNA MGP_CASTEiJ_T0024775.1 MGP_CASTEiJ_G0016637.1 mouse_genomes_project 10 61832592 61887786 - MGP_CASTEiJ_P0024775 Ccar1 protein_coding protein_coding MGP_CASTEiJ_T0025247.1 MGP_CASTEiJ_G0016742.1 mouse_genomes_project 10 77945374 78004638 + MGP_CASTEiJ_P0025247 Tspear protein_coding protein_coding MGP_CASTEiJ_T0025248.1 MGP_CASTEiJ_G0016742.1 mouse_genomes_project 10 77986083 77989595 + Tspear protein_coding retained_intron MGP_CASTEiJ_T0025249.1 MGP_CASTEiJ_G0016742.1 mouse_genomes_project 10 77986124 78010525 + MGP_CASTEiJ_P0025249 Tspear protein_coding protein_coding MGP_CASTEiJ_T0024544.1 MGP_CASTEiJ_G0016576.1 mouse_genomes_project 10 56946076 56947648 - MGP_CASTEiJ_P0024544 Gm4981 protein_coding protein_coding MGP_CASTEiJ_T0025334.1 MGP_CASTEiJ_G0016770.1 mouse_genomes_project 10 79138079 79143881 + MGP_CASTEiJ_P0025334 Olfr1351 protein_coding protein_coding MGP_CASTEiJ_T0025367.1 MGP_CASTEiJ_G0016783.1 mouse_genomes_project 10 79829424 79835879 + MGP_CASTEiJ_P0025367 Gzmm protein_coding protein_coding MGP_CASTEiJ_T0025368.1 MGP_CASTEiJ_G0016783.1 mouse_genomes_project 10 79834377 79835878 + Gzmm protein_coding processed_transcript MGP_CASTEiJ_T0024274.1 MGP_CASTEiJ_G0016491.1 mouse_genomes_project 10 38108532 38155156 + MGP_CASTEiJ_P0024274 Traf3ip2 protein_coding protein_coding MGP_CASTEiJ_T0024275.1 MGP_CASTEiJ_G0016491.1 mouse_genomes_project 10 38139941 38146668 + Traf3ip2 protein_coding retained_intron MGP_CASTEiJ_T0024276.1 MGP_CASTEiJ_G0016491.1 mouse_genomes_project 10 38147032 38151722 + Traf3ip2 protein_coding processed_transcript MGP_CASTEiJ_T0024277.1 MGP_CASTEiJ_G0016491.1 mouse_genomes_project 10 38147623 38154666 + Traf3ip2 protein_coding retained_intron MGP_CASTEiJ_T0024278.1 MGP_CASTEiJ_G0016491.1 mouse_genomes_project 10 38151357 38154668 + Traf3ip2 protein_coding retained_intron MGP_CASTEiJ_T0023943.1 MGP_CASTEiJ_G0016372.1 mouse_genomes_project 10 12039741 12098580 + MGP_CASTEiJ_P0023943 Nmbr protein_coding protein_coding MGP_CASTEiJ_T0023944.1 MGP_CASTEiJ_G0016372.1 mouse_genomes_project 10 12039747 12085196 + Nmbr protein_coding processed_transcript MGP_CASTEiJ_T0023945.1 MGP_CASTEiJ_G0016372.1 mouse_genomes_project 10 12039759 12090864 + Nmbr protein_coding processed_transcript MGP_CASTEiJ_T0023946.1 MGP_CASTEiJ_G0016372.1 mouse_genomes_project 10 12039771 12099106 + MGP_CASTEiJ_P0023946 Nmbr protein_coding protein_coding MGP_CASTEiJ_T0023947.1 MGP_CASTEiJ_G0016372.1 mouse_genomes_project 10 12039777 12051832 + Nmbr protein_coding retained_intron MGP_CASTEiJ_T0023949.1 MGP_CASTEiJ_G0016372.1 mouse_genomes_project 10 12091995 12103467 + MGP_CASTEiJ_P0023949 Nmbr protein_coding protein_coding MGP_CASTEiJ_T0023950.1 MGP_CASTEiJ_G0016372.1 mouse_genomes_project 10 12092057 12103200 + MGP_CASTEiJ_P0023950 Nmbr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023951.1 MGP_CASTEiJ_G0016372.1 mouse_genomes_project 10 12092057 12103200 + MGP_CASTEiJ_P0023951 Nmbr protein_coding protein_coding MGP_CASTEiJ_T0025712.1 MGP_CASTEiJ_G0016867.1 mouse_genomes_project 10 81424424 81433686 + MGP_CASTEiJ_P0025712 Zbtb7a protein_coding protein_coding MGP_CASTEiJ_T0025713.1 MGP_CASTEiJ_G0016867.1 mouse_genomes_project 10 81425484 81441428 + MGP_CASTEiJ_P0025713 Zbtb7a protein_coding protein_coding MGP_CASTEiJ_T0025714.1 MGP_CASTEiJ_G0016867.1 mouse_genomes_project 10 81425762 81437641 + MGP_CASTEiJ_P0025714 Zbtb7a protein_coding protein_coding MGP_CASTEiJ_T0025715.1 MGP_CASTEiJ_G0016867.1 mouse_genomes_project 10 81425779 81433297 + MGP_CASTEiJ_P0025715 Zbtb7a protein_coding protein_coding MGP_CASTEiJ_T0025716.1 MGP_CASTEiJ_G0016867.1 mouse_genomes_project 10 81425791 81442201 + MGP_CASTEiJ_P0025716 Zbtb7a protein_coding protein_coding MGP_CASTEiJ_T0025717.1 MGP_CASTEiJ_G0016867.1 mouse_genomes_project 10 81427153 81437656 + MGP_CASTEiJ_P0025717 Zbtb7a protein_coding protein_coding MGP_CASTEiJ_T0012049.1 MGP_CASTEiJ_G0010212.1 mouse_genomes_project 10 19845206 19846149 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0025424.1 MGP_CASTEiJ_G0016795.1 mouse_genomes_project 10 80033950 80042917 + Prtn3 protein_coding processed_transcript MGP_CASTEiJ_T0025425.1 MGP_CASTEiJ_G0016795.1 mouse_genomes_project 10 80039496 80043048 + MGP_CASTEiJ_P0025425 Prtn3 protein_coding protein_coding MGP_CASTEiJ_T0025426.1 MGP_CASTEiJ_G0016795.1 mouse_genomes_project 10 80040866 80043048 + Prtn3 protein_coding retained_intron MGP_CASTEiJ_T0025427.1 MGP_CASTEiJ_G0016795.1 mouse_genomes_project 10 80040890 80042265 + Prtn3 protein_coding retained_intron MGP_CASTEiJ_T0025428.1 MGP_CASTEiJ_G0016795.1 mouse_genomes_project 10 80040928 80042720 + MGP_CASTEiJ_P0025428 Prtn3 protein_coding protein_coding MGP_CASTEiJ_T0025429.1 MGP_CASTEiJ_G0016795.1 mouse_genomes_project 10 80041658 80042756 + Prtn3 protein_coding retained_intron MGP_CASTEiJ_T0023846.1 MGP_CASTEiJ_G0016351.1 mouse_genomes_project 10 7567464 7703889 - MGP_CASTEiJ_P0023846 protein_coding protein_coding MGP_CASTEiJ_T0023847.1 MGP_CASTEiJ_G0016351.1 mouse_genomes_project 10 7567470 7703867 - MGP_CASTEiJ_P0023847 protein_coding protein_coding MGP_CASTEiJ_T0023848.1 MGP_CASTEiJ_G0016351.1 mouse_genomes_project 10 7567470 7647214 - MGP_CASTEiJ_P0023848 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023849.1 MGP_CASTEiJ_G0016351.1 mouse_genomes_project 10 7567699 7703884 - MGP_CASTEiJ_P0023849 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023850.1 MGP_CASTEiJ_G0016351.1 mouse_genomes_project 10 7634722 7659188 - MGP_CASTEiJ_P0023850 protein_coding protein_coding MGP_CASTEiJ_T0023851.1 MGP_CASTEiJ_G0016351.1 mouse_genomes_project 10 7635380 7703867 - MGP_CASTEiJ_P0023851 protein_coding protein_coding MGP_CASTEiJ_T0005908.1 MGP_CASTEiJ_G0004960.1 mouse_genomes_project 10 8455521 8494825 - 4930432B10Rik lincRNA lincRNA MGP_CASTEiJ_T0005909.1 MGP_CASTEiJ_G0004960.1 mouse_genomes_project 10 8470033 8495047 - 4930432B10Rik lincRNA lincRNA MGP_CASTEiJ_T0012098.1 MGP_CASTEiJ_G0010261.1 mouse_genomes_project 10 113787852 113788582 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002975.1 MGP_CASTEiJ_G0002785.1 mouse_genomes_project 10 88857666 88865056 - Gm16235 antisense antisense MGP_CASTEiJ_T0002976.1 MGP_CASTEiJ_G0002785.1 mouse_genomes_project 10 88858585 88859366 - Gm16235 antisense antisense MGP_CASTEiJ_T0026376.1 MGP_CASTEiJ_G0017034.1 mouse_genomes_project 10 108614965 108766876 + MGP_CASTEiJ_P0026376 Lin7a protein_coding protein_coding MGP_CASTEiJ_T0026377.1 MGP_CASTEiJ_G0017034.1 mouse_genomes_project 10 108614965 108766876 + MGP_CASTEiJ_P0026377 Lin7a protein_coding protein_coding MGP_CASTEiJ_T0025095.1 MGP_CASTEiJ_G0016694.1 mouse_genomes_project 10 75674940 75676735 - MGP_CASTEiJ_P0025095 Ddt protein_coding protein_coding MGP_CASTEiJ_T0025096.1 MGP_CASTEiJ_G0016694.1 mouse_genomes_project 10 75674943 75677115 - MGP_CASTEiJ_P0025096 Ddt protein_coding protein_coding MGP_CASTEiJ_T0026771.1 MGP_CASTEiJ_G0017159.1 mouse_genomes_project 10 130749101 130765724 + MGP_CASTEiJ_P0026771 protein_coding protein_coding MGP_CASTEiJ_T0024788.1 MGP_CASTEiJ_G0016640.1 mouse_genomes_project 10 62059306 62088984 + MGP_CASTEiJ_P0024788 Dna2 protein_coding protein_coding MGP_CASTEiJ_T0024789.1 MGP_CASTEiJ_G0016640.1 mouse_genomes_project 10 62059355 62088567 + MGP_CASTEiJ_P0024789 Dna2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024790.1 MGP_CASTEiJ_G0016640.1 mouse_genomes_project 10 62059360 62061983 + Dna2 protein_coding retained_intron MGP_CASTEiJ_T0024791.1 MGP_CASTEiJ_G0016640.1 mouse_genomes_project 10 62059390 62080666 + Dna2 protein_coding retained_intron MGP_CASTEiJ_T0024792.1 MGP_CASTEiJ_G0016640.1 mouse_genomes_project 10 62080219 62088983 + Dna2 protein_coding retained_intron MGP_CASTEiJ_T0024793.1 MGP_CASTEiJ_G0016640.1 mouse_genomes_project 10 62080514 62088978 + Dna2 protein_coding retained_intron MGP_CASTEiJ_T0012062.1 MGP_CASTEiJ_G0010225.1 mouse_genomes_project 10 42151331 42151823 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012063.1 MGP_CASTEiJ_G0010226.1 mouse_genomes_project 10 42641642 42644300 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0025594.1 MGP_CASTEiJ_G0016832.1 mouse_genomes_project 10 80620452 80624236 - Uqcr11 protein_coding processed_transcript MGP_CASTEiJ_T0025595.1 MGP_CASTEiJ_G0016832.1 mouse_genomes_project 10 80620452 80624300 - MGP_CASTEiJ_P0025595 Uqcr11 protein_coding protein_coding MGP_CASTEiJ_T0025596.1 MGP_CASTEiJ_G0016832.1 mouse_genomes_project 10 80620453 80624265 - Uqcr11 protein_coding processed_transcript MGP_CASTEiJ_T0099197.1 MGP_CASTEiJ_G0036110.1 mouse_genomes_project 10 105470499 105470561 - Gm22339 snRNA snRNA MGP_CASTEiJ_T0002934.1 MGP_CASTEiJ_G0002752.1 mouse_genomes_project 10 61660786 61662162 + 4933428P19Rik antisense antisense MGP_CASTEiJ_T0026873.1 MGP_CASTEiJ_G0017195.1 mouse_genomes_project 10 131591748 131603011 - MGP_CASTEiJ_P0026873 Pa2g4 protein_coding protein_coding MGP_CASTEiJ_T0026874.1 MGP_CASTEiJ_G0017195.1 mouse_genomes_project 10 131593842 131602904 - MGP_CASTEiJ_P0026874 Pa2g4 protein_coding protein_coding MGP_CASTEiJ_T0026875.1 MGP_CASTEiJ_G0017195.1 mouse_genomes_project 10 131600237 131602946 - Pa2g4 protein_coding retained_intron MGP_CASTEiJ_T0025316.1 MGP_CASTEiJ_G0016760.1 mouse_genomes_project 10 78784441 78785453 - MGP_CASTEiJ_P0025316 Olfr1357 protein_coding protein_coding MGP_CASTEiJ_T0025317.1 MGP_CASTEiJ_G0016760.1 mouse_genomes_project 10 78784441 78790801 - MGP_CASTEiJ_P0025317 Olfr1357 protein_coding protein_coding MGP_CASTEiJ_T0025318.1 MGP_CASTEiJ_G0016760.1 mouse_genomes_project 10 78784705 78790801 - MGP_CASTEiJ_P0025318 Olfr1357 protein_coding protein_coding MGP_CASTEiJ_T0024784.1 MGP_CASTEiJ_G0016639.1 mouse_genomes_project 10 62032301 62058773 + MGP_CASTEiJ_P0024784 Slc25a16 protein_coding protein_coding MGP_CASTEiJ_T0024785.1 MGP_CASTEiJ_G0016639.1 mouse_genomes_project 10 62032335 62040534 + Slc25a16 protein_coding retained_intron MGP_CASTEiJ_T0024786.1 MGP_CASTEiJ_G0016639.1 mouse_genomes_project 10 62032348 62056700 + MGP_CASTEiJ_P0024786 Slc25a16 protein_coding protein_coding MGP_CASTEiJ_T0024787.1 MGP_CASTEiJ_G0016639.1 mouse_genomes_project 10 62054505 62056705 + Slc25a16 protein_coding retained_intron MGP_CASTEiJ_T0024962.1 MGP_CASTEiJ_G0016672.1 mouse_genomes_project 10 70496016 70731292 - MGP_CASTEiJ_P0024962 Bicc1 protein_coding protein_coding MGP_CASTEiJ_T0024963.1 MGP_CASTEiJ_G0016672.1 mouse_genomes_project 10 70498266 70718492 - MGP_CASTEiJ_P0024963 Bicc1 protein_coding protein_coding MGP_CASTEiJ_T0024964.1 MGP_CASTEiJ_G0016672.1 mouse_genomes_project 10 70498266 70731282 - MGP_CASTEiJ_P0024964 Bicc1 protein_coding protein_coding MGP_CASTEiJ_T0024965.1 MGP_CASTEiJ_G0016672.1 mouse_genomes_project 10 70507075 70520914 - Bicc1 protein_coding retained_intron MGP_CASTEiJ_T0026433.1 MGP_CASTEiJ_G0017054.1 mouse_genomes_project 10 113864443 113899124 - MGP_CASTEiJ_P0026433 Glipr1l1 protein_coding protein_coding MGP_CASTEiJ_T0025226.1 MGP_CASTEiJ_G0016731.1 mouse_genomes_project 10 77676849 77715276 + MGP_CASTEiJ_P0025226 Sumo3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025227.1 MGP_CASTEiJ_G0016731.1 mouse_genomes_project 10 77676861 77689250 + MGP_CASTEiJ_P0025227 Sumo3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025228.1 MGP_CASTEiJ_G0016731.1 mouse_genomes_project 10 77676877 77688847 + MGP_CASTEiJ_P0025228 Sumo3 protein_coding protein_coding MGP_CASTEiJ_T0025229.1 MGP_CASTEiJ_G0016731.1 mouse_genomes_project 10 77676877 77689183 + MGP_CASTEiJ_P0025229 Sumo3 protein_coding protein_coding MGP_CASTEiJ_T0025230.1 MGP_CASTEiJ_G0016731.1 mouse_genomes_project 10 77676973 77690875 + MGP_CASTEiJ_P0025230 Sumo3 protein_coding protein_coding MGP_CASTEiJ_T0025231.1 MGP_CASTEiJ_G0016731.1 mouse_genomes_project 10 77677223 77689962 + MGP_CASTEiJ_P0025231 Sumo3 protein_coding protein_coding MGP_CASTEiJ_T0025232.1 MGP_CASTEiJ_G0016731.1 mouse_genomes_project 10 77682358 77689438 + MGP_CASTEiJ_P0025232 Sumo3 protein_coding protein_coding MGP_CASTEiJ_T0025233.1 MGP_CASTEiJ_G0016731.1 mouse_genomes_project 10 77687672 77688599 + Sumo3 protein_coding processed_transcript MGP_CASTEiJ_T0000781.1 MGP_CASTEiJ_G0000722.1 mouse_genomes_project 10 77007469 77008147 - TEC TEC MGP_CASTEiJ_T0025732.1 MGP_CASTEiJ_G0016874.1 mouse_genomes_project 10 81532092 81553245 + MGP_CASTEiJ_P0025732 Zfr2 protein_coding protein_coding MGP_CASTEiJ_T0025733.1 MGP_CASTEiJ_G0016874.1 mouse_genomes_project 10 81532092 81536459 + MGP_CASTEiJ_P0025733 Zfr2 protein_coding protein_coding MGP_CASTEiJ_T0025734.1 MGP_CASTEiJ_G0016874.1 mouse_genomes_project 10 81532113 81536483 + Zfr2 protein_coding processed_transcript MGP_CASTEiJ_T0025735.1 MGP_CASTEiJ_G0016874.1 mouse_genomes_project 10 81532113 81543568 + Zfr2 protein_coding retained_intron MGP_CASTEiJ_T0025736.1 MGP_CASTEiJ_G0016874.1 mouse_genomes_project 10 81532124 81553243 + Zfr2 protein_coding retained_intron MGP_CASTEiJ_T0025737.1 MGP_CASTEiJ_G0016874.1 mouse_genomes_project 10 81549558 81552834 + MGP_CASTEiJ_P0025737 Zfr2 protein_coding protein_coding MGP_CASTEiJ_T0025738.1 MGP_CASTEiJ_G0016874.1 mouse_genomes_project 10 81550193 81551670 + Zfr2 protein_coding retained_intron MGP_CASTEiJ_T0024417.1 MGP_CASTEiJ_G0016529.1 mouse_genomes_project 10 41753034 41941385 - MGP_CASTEiJ_P0024417 Sobp protein_coding protein_coding MGP_CASTEiJ_T0024418.1 MGP_CASTEiJ_G0016529.1 mouse_genomes_project 10 41936750 41941376 - MGP_CASTEiJ_P0024418 Sobp protein_coding protein_coding MGP_CASTEiJ_T0005993.1 MGP_CASTEiJ_G0005017.1 mouse_genomes_project 10 118709112 118715315 + Gm26579 lincRNA lincRNA MGP_CASTEiJ_T0026922.1 MGP_CASTEiJ_G0017217.1 mouse_genomes_project 10 132095559 132099852 + MGP_CASTEiJ_P0026922 protein_coding protein_coding MGP_CASTEiJ_T0005938.1 MGP_CASTEiJ_G0004985.1 mouse_genomes_project 10 65362462 65507802 - 1700023F02Rik lincRNA lincRNA MGP_CASTEiJ_T0005939.1 MGP_CASTEiJ_G0004985.1 mouse_genomes_project 10 65362462 65365920 - 1700023F02Rik lincRNA lincRNA MGP_CASTEiJ_T0005940.1 MGP_CASTEiJ_G0004985.1 mouse_genomes_project 10 65362466 65365939 - 1700023F02Rik lincRNA lincRNA MGP_CASTEiJ_T0005941.1 MGP_CASTEiJ_G0004985.1 mouse_genomes_project 10 65362466 65365934 - 1700023F02Rik lincRNA lincRNA MGP_CASTEiJ_T0005942.1 MGP_CASTEiJ_G0004985.1 mouse_genomes_project 10 65362533 65364944 - 1700023F02Rik lincRNA lincRNA MGP_CASTEiJ_T0026256.1 MGP_CASTEiJ_G0016990.1 mouse_genomes_project 10 94781386 94897572 + MGP_CASTEiJ_P0026256 Fgd6 protein_coding protein_coding MGP_CASTEiJ_T0026257.1 MGP_CASTEiJ_G0016990.1 mouse_genomes_project 10 94781803 94860419 + MGP_CASTEiJ_P0026257 Fgd6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026258.1 MGP_CASTEiJ_G0016990.1 mouse_genomes_project 10 94820476 94837429 + Fgd6 protein_coding processed_transcript MGP_CASTEiJ_T0026259.1 MGP_CASTEiJ_G0016990.1 mouse_genomes_project 10 94885362 94892095 + Fgd6 protein_coding retained_intron MGP_CASTEiJ_T0024451.1 MGP_CASTEiJ_G0016544.1 mouse_genomes_project 10 44294133 44387707 - MGP_CASTEiJ_P0024451 Lin28b protein_coding protein_coding MGP_CASTEiJ_T0025802.1 MGP_CASTEiJ_G0016888.1 mouse_genomes_project 10 81704323 81706125 + MGP_CASTEiJ_P0025802 Smim24 protein_coding protein_coding MGP_CASTEiJ_T0025803.1 MGP_CASTEiJ_G0016888.1 mouse_genomes_project 10 81704882 81706371 + Smim24 protein_coding processed_transcript MGP_CASTEiJ_T0002985.1 MGP_CASTEiJ_G0002791.1 mouse_genomes_project 10 116684209 116698641 + Gm15723 antisense antisense MGP_CASTEiJ_T0025689.1 MGP_CASTEiJ_G0016862.1 mouse_genomes_project 10 81308619 81317302 - MGP_CASTEiJ_P0025689 Slc39a3 protein_coding protein_coding MGP_CASTEiJ_T0025690.1 MGP_CASTEiJ_G0016862.1 mouse_genomes_project 10 81308621 81317184 - MGP_CASTEiJ_P0025690 Slc39a3 protein_coding protein_coding MGP_CASTEiJ_T0025691.1 MGP_CASTEiJ_G0016862.1 mouse_genomes_project 10 81308622 81313984 - MGP_CASTEiJ_P0025691 Slc39a3 protein_coding protein_coding MGP_CASTEiJ_T0025692.1 MGP_CASTEiJ_G0016862.1 mouse_genomes_project 10 81313928 81317158 - Slc39a3 protein_coding processed_transcript MGP_CASTEiJ_T0025693.1 MGP_CASTEiJ_G0016862.1 mouse_genomes_project 10 81313954 81317126 - Slc39a3 protein_coding processed_transcript MGP_CASTEiJ_T0026430.1 MGP_CASTEiJ_G0017052.1 mouse_genomes_project 10 113732821 113952093 + MGP_CASTEiJ_P0026430 Caps2 protein_coding protein_coding MGP_CASTEiJ_T0026434.1 MGP_CASTEiJ_G0017052.1 mouse_genomes_project 10 113902409 113952532 + MGP_CASTEiJ_P0026434 Caps2 protein_coding protein_coding MGP_CASTEiJ_T0012092.1 MGP_CASTEiJ_G0010255.1 mouse_genomes_project 10 97315494 97315682 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0026773.1 MGP_CASTEiJ_G0017161.1 mouse_genomes_project 10 130749175 130765647 + MGP_CASTEiJ_P0026773 protein_coding protein_coding MGP_CASTEiJ_T0026774.1 MGP_CASTEiJ_G0017161.1 mouse_genomes_project 10 130749175 130787703 + MGP_CASTEiJ_P0026774 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025315.1 MGP_CASTEiJ_G0016759.1 mouse_genomes_project 10 78753244 78760682 - MGP_CASTEiJ_P0025315 Syde1 protein_coding protein_coding MGP_CASTEiJ_T0101961.1 MGP_CASTEiJ_G0038686.1 mouse_genomes_project 10 21766618 21767151 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0026040.1 MGP_CASTEiJ_G0016948.1 mouse_genomes_project 10 87851662 87854621 - MGP_CASTEiJ_P0026040 Ascl1 protein_coding protein_coding MGP_CASTEiJ_T0025638.1 MGP_CASTEiJ_G0016843.1 mouse_genomes_project 10 80908801 80919702 - MGP_CASTEiJ_P0025638 Mknk2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025639.1 MGP_CASTEiJ_G0016843.1 mouse_genomes_project 10 80908815 80915473 - MGP_CASTEiJ_P0025639 Mknk2 protein_coding protein_coding MGP_CASTEiJ_T0025640.1 MGP_CASTEiJ_G0016843.1 mouse_genomes_project 10 80913411 80915788 - MGP_CASTEiJ_P0025640 Mknk2 protein_coding protein_coding MGP_CASTEiJ_T0025641.1 MGP_CASTEiJ_G0016843.1 mouse_genomes_project 10 80915106 80915748 - MGP_CASTEiJ_P0025641 Mknk2 protein_coding protein_coding MGP_CASTEiJ_T0025642.1 MGP_CASTEiJ_G0016843.1 mouse_genomes_project 10 80915442 80921603 - MGP_CASTEiJ_P0025642 Mknk2 protein_coding protein_coding MGP_CASTEiJ_T0002977.1 MGP_CASTEiJ_G0002786.1 mouse_genomes_project 10 94394565 94403705 - Gm15915 antisense antisense MGP_CASTEiJ_T0026572.1 MGP_CASTEiJ_G0017097.1 mouse_genomes_project 10 122511912 122513505 + Tmbim4 protein_coding processed_transcript MGP_CASTEiJ_T0026573.1 MGP_CASTEiJ_G0017097.1 mouse_genomes_project 10 122511934 122513498 + Tmbim4 protein_coding processed_transcript MGP_CASTEiJ_T0026574.1 MGP_CASTEiJ_G0017097.1 mouse_genomes_project 10 122511980 122533461 + MGP_CASTEiJ_P0026574 Tmbim4 protein_coding protein_coding MGP_CASTEiJ_T0026575.1 MGP_CASTEiJ_G0017097.1 mouse_genomes_project 10 122512975 122513498 + Tmbim4 protein_coding processed_transcript MGP_CASTEiJ_T0026576.1 MGP_CASTEiJ_G0017097.1 mouse_genomes_project 10 122520242 122545515 + MGP_CASTEiJ_P0026576 Tmbim4 protein_coding protein_coding MGP_CASTEiJ_T0026577.1 MGP_CASTEiJ_G0017097.1 mouse_genomes_project 10 122520272 122533616 + MGP_CASTEiJ_P0026577 Tmbim4 protein_coding protein_coding MGP_CASTEiJ_T0026578.1 MGP_CASTEiJ_G0017097.1 mouse_genomes_project 10 122520285 122545437 + MGP_CASTEiJ_P0026578 Tmbim4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026579.1 MGP_CASTEiJ_G0017097.1 mouse_genomes_project 10 122537922 122545337 + Tmbim4 protein_coding retained_intron MGP_CASTEiJ_T0026580.1 MGP_CASTEiJ_G0017097.1 mouse_genomes_project 10 122539060 122544873 + Tmbim4 protein_coding retained_intron MGP_CASTEiJ_T0026581.1 MGP_CASTEiJ_G0017097.1 mouse_genomes_project 10 122539060 122545515 + Tmbim4 protein_coding retained_intron MGP_CASTEiJ_T0026212.1 MGP_CASTEiJ_G0016980.1 mouse_genomes_project 10 94152154 94185345 + MGP_CASTEiJ_P0026212 Lta4h protein_coding protein_coding MGP_CASTEiJ_T0026710.1 MGP_CASTEiJ_G0017144.1 mouse_genomes_project 10 130229071 130243586 - MGP_CASTEiJ_P0026710 Inhbc protein_coding protein_coding MGP_CASTEiJ_T0024085.1 MGP_CASTEiJ_G0016420.1 mouse_genomes_project 10 21699622 21700666 + MGP_CASTEiJ_P0024085 Taar4 protein_coding protein_coding MGP_CASTEiJ_T0005991.1 MGP_CASTEiJ_G0005016.1 mouse_genomes_project 10 114448749 114513199 + 1700010J16Rik lincRNA lincRNA MGP_CASTEiJ_T0005992.1 MGP_CASTEiJ_G0005016.1 mouse_genomes_project 10 114448787 114513202 + 1700010J16Rik lincRNA lincRNA MGP_CASTEiJ_T0026431.1 MGP_CASTEiJ_G0017053.1 mouse_genomes_project 10 113775252 113806022 + MGP_CASTEiJ_P0026431 Glipr1l2 protein_coding protein_coding MGP_CASTEiJ_T0026432.1 MGP_CASTEiJ_G0017053.1 mouse_genomes_project 10 113775252 113805223 + MGP_CASTEiJ_P0026432 Glipr1l2 protein_coding protein_coding MGP_CASTEiJ_T0026282.1 MGP_CASTEiJ_G0016998.1 mouse_genomes_project 10 96209854 96240638 - MGP_CASTEiJ_P0026282 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026283.1 MGP_CASTEiJ_G0016998.1 mouse_genomes_project 10 96212202 96217531 - protein_coding retained_intron MGP_CASTEiJ_T0026284.1 MGP_CASTEiJ_G0016998.1 mouse_genomes_project 10 96238629 96244430 - MGP_CASTEiJ_P0026284 protein_coding protein_coding MGP_CASTEiJ_T0026285.1 MGP_CASTEiJ_G0016998.1 mouse_genomes_project 10 96241064 96244241 - protein_coding processed_transcript MGP_CASTEiJ_T0026286.1 MGP_CASTEiJ_G0016998.1 mouse_genomes_project 10 96242668 96243576 - protein_coding processed_transcript MGP_CASTEiJ_T0026068.1 MGP_CASTEiJ_G0016955.1 mouse_genomes_project 10 88725608 88761117 - MGP_CASTEiJ_P0026068 Dram1 protein_coding protein_coding MGP_CASTEiJ_T0026069.1 MGP_CASTEiJ_G0016955.1 mouse_genomes_project 10 88725608 88761038 - MGP_CASTEiJ_P0026069 Dram1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026070.1 MGP_CASTEiJ_G0016955.1 mouse_genomes_project 10 88743597 88787105 - MGP_CASTEiJ_P0026070 Dram1 protein_coding protein_coding MGP_CASTEiJ_T0100384.1 MGP_CASTEiJ_G0037297.1 mouse_genomes_project 10 91708784 91709030 - Gm24119 snoRNA snoRNA MGP_CASTEiJ_T0009367.1 MGP_CASTEiJ_G0007555.1 mouse_genomes_project 10 87055484 87055618 - Gm25745 miRNA miRNA MGP_CASTEiJ_T0024372.1 MGP_CASTEiJ_G0016521.1 mouse_genomes_project 10 40570746 40678156 - MGP_CASTEiJ_P0024372 protein_coding protein_coding MGP_CASTEiJ_T0024373.1 MGP_CASTEiJ_G0016521.1 mouse_genomes_project 10 40570749 40636436 - protein_coding retained_intron MGP_CASTEiJ_T0024374.1 MGP_CASTEiJ_G0016521.1 mouse_genomes_project 10 40570756 40678102 - MGP_CASTEiJ_P0024374 protein_coding protein_coding MGP_CASTEiJ_T0024375.1 MGP_CASTEiJ_G0016521.1 mouse_genomes_project 10 40571793 40635814 - protein_coding retained_intron MGP_CASTEiJ_T0024376.1 MGP_CASTEiJ_G0016521.1 mouse_genomes_project 10 40572549 40678162 - MGP_CASTEiJ_P0024376 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024377.1 MGP_CASTEiJ_G0016521.1 mouse_genomes_project 10 40646314 40652882 - MGP_CASTEiJ_P0024377 protein_coding protein_coding MGP_CASTEiJ_T0024378.1 MGP_CASTEiJ_G0016521.1 mouse_genomes_project 10 40659489 40678100 - MGP_CASTEiJ_P0024378 protein_coding protein_coding MGP_CASTEiJ_T0024379.1 MGP_CASTEiJ_G0016521.1 mouse_genomes_project 10 40660029 40678102 - MGP_CASTEiJ_P0024379 protein_coding protein_coding MGP_CASTEiJ_T0098317.1 MGP_CASTEiJ_G0035248.1 mouse_genomes_project 10 75487583 75488069 - pseudogene pseudogene MGP_CASTEiJ_T0024132.1 MGP_CASTEiJ_G0016438.1 mouse_genomes_project 10 23411533 23420144 - MGP_CASTEiJ_P0024132 Smlr1 protein_coding protein_coding MGP_CASTEiJ_T0024133.1 MGP_CASTEiJ_G0016438.1 mouse_genomes_project 10 23415861 23420019 - Smlr1 protein_coding retained_intron MGP_CASTEiJ_T0026529.1 MGP_CASTEiJ_G0017086.1 mouse_genomes_project 10 119889002 119901666 - MGP_CASTEiJ_P0026529 Slc35e3 protein_coding protein_coding MGP_CASTEiJ_T0100393.1 MGP_CASTEiJ_G0037306.1 mouse_genomes_project 10 108466652 108466737 + Gm24745 snoRNA snoRNA MGP_CASTEiJ_T0009349.1 MGP_CASTEiJ_G0007537.1 mouse_genomes_project 10 78563597 78563668 - Mir6907 miRNA miRNA MGP_CASTEiJ_T0024119.1 MGP_CASTEiJ_G0016436.1 mouse_genomes_project 10 23030673 23108339 - Akap7 protein_coding processed_transcript MGP_CASTEiJ_T0024120.1 MGP_CASTEiJ_G0016436.1 mouse_genomes_project 10 23030673 23063900 - MGP_CASTEiJ_P0024120 Akap7 protein_coding protein_coding MGP_CASTEiJ_T0024121.1 MGP_CASTEiJ_G0016436.1 mouse_genomes_project 10 23031709 23175342 - MGP_CASTEiJ_P0024121 Akap7 protein_coding protein_coding MGP_CASTEiJ_T0024122.1 MGP_CASTEiJ_G0016436.1 mouse_genomes_project 10 23085605 23165128 - MGP_CASTEiJ_P0024122 Akap7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024123.1 MGP_CASTEiJ_G0016436.1 mouse_genomes_project 10 23137846 23171932 - MGP_CASTEiJ_P0024123 Akap7 protein_coding protein_coding MGP_CASTEiJ_T0024124.1 MGP_CASTEiJ_G0016436.1 mouse_genomes_project 10 23154813 23175283 - MGP_CASTEiJ_P0024124 Akap7 protein_coding protein_coding MGP_CASTEiJ_T0024125.1 MGP_CASTEiJ_G0016436.1 mouse_genomes_project 10 23159407 23172905 - MGP_CASTEiJ_P0024125 Akap7 protein_coding protein_coding MGP_CASTEiJ_T0024126.1 MGP_CASTEiJ_G0016436.1 mouse_genomes_project 10 23159508 23183779 - MGP_CASTEiJ_P0024126 Akap7 protein_coding protein_coding MGP_CASTEiJ_T0099185.1 MGP_CASTEiJ_G0036098.1 mouse_genomes_project 10 80162327 80162434 + Gm26243 snRNA snRNA MGP_CASTEiJ_T0005925.1 MGP_CASTEiJ_G0004972.1 mouse_genomes_project 10 35775143 35817223 + Gm26535 lincRNA lincRNA MGP_CASTEiJ_T0025644.1 MGP_CASTEiJ_G0016845.1 mouse_genomes_project 10 80949348 80952035 + MGP_CASTEiJ_P0025644 Izumo4 protein_coding protein_coding MGP_CASTEiJ_T0098711.1 MGP_CASTEiJ_G0035642.1 mouse_genomes_project 10 41557260 41557565 - Gm26464 ribozyme ribozyme MGP_CASTEiJ_T0002935.1 MGP_CASTEiJ_G0002753.1 mouse_genomes_project 10 62114760 62115273 + antisense antisense MGP_CASTEiJ_T0024082.1 MGP_CASTEiJ_G0016417.1 mouse_genomes_project 10 21655112 21656226 + MGP_CASTEiJ_P0024082 Taar1 protein_coding protein_coding MGP_CASTEiJ_T0024007.1 MGP_CASTEiJ_G0016394.1 mouse_genomes_project 10 17478513 17685396 + MGP_CASTEiJ_P0024007 Map3k5 protein_coding protein_coding MGP_CASTEiJ_T0024008.1 MGP_CASTEiJ_G0016394.1 mouse_genomes_project 10 17478567 17684311 + MGP_CASTEiJ_P0024008 Map3k5 protein_coding protein_coding MGP_CASTEiJ_T0024009.1 MGP_CASTEiJ_G0016394.1 mouse_genomes_project 10 17479260 17642738 + MGP_CASTEiJ_P0024009 Map3k5 protein_coding protein_coding MGP_CASTEiJ_T0024010.1 MGP_CASTEiJ_G0016394.1 mouse_genomes_project 10 17495095 17560421 + MGP_CASTEiJ_P0024010 Map3k5 protein_coding protein_coding MGP_CASTEiJ_T0024011.1 MGP_CASTEiJ_G0016394.1 mouse_genomes_project 10 17642104 17648004 + Map3k5 protein_coding processed_transcript MGP_CASTEiJ_T0024012.1 MGP_CASTEiJ_G0016394.1 mouse_genomes_project 10 17667658 17670545 + Map3k5 protein_coding retained_intron MGP_CASTEiJ_T0024013.1 MGP_CASTEiJ_G0016394.1 mouse_genomes_project 10 17670544 17681196 + Map3k5 protein_coding retained_intron MGP_CASTEiJ_T0099196.1 MGP_CASTEiJ_G0036109.1 mouse_genomes_project 10 105229173 105229282 + Gm25143 snRNA snRNA MGP_CASTEiJ_T0026327.1 MGP_CASTEiJ_G0017021.1 mouse_genomes_project 10 101622294 101635612 - MGP_CASTEiJ_P0026327 4930430F08Rik protein_coding protein_coding MGP_CASTEiJ_T0100357.1 MGP_CASTEiJ_G0037270.1 mouse_genomes_project 10 21525822 21525896 - Gm23130 snoRNA snoRNA MGP_CASTEiJ_T0024309.1 MGP_CASTEiJ_G0016504.1 mouse_genomes_project 10 39212195 39236527 + MGP_CASTEiJ_P0024309 Ddo protein_coding protein_coding MGP_CASTEiJ_T0026245.1 MGP_CASTEiJ_G0016989.1 mouse_genomes_project 10 94676252 94712404 - MGP_CASTEiJ_P0026245 Vezt protein_coding protein_coding MGP_CASTEiJ_T0026246.1 MGP_CASTEiJ_G0016989.1 mouse_genomes_project 10 94699429 94781203 - MGP_CASTEiJ_P0026246 Vezt protein_coding protein_coding MGP_CASTEiJ_T0026247.1 MGP_CASTEiJ_G0016989.1 mouse_genomes_project 10 94705999 94781134 - MGP_CASTEiJ_P0026247 Vezt protein_coding protein_coding MGP_CASTEiJ_T0026248.1 MGP_CASTEiJ_G0016989.1 mouse_genomes_project 10 94709214 94781091 - MGP_CASTEiJ_P0026248 Vezt protein_coding protein_coding MGP_CASTEiJ_T0026249.1 MGP_CASTEiJ_G0016989.1 mouse_genomes_project 10 94709671 94781128 - MGP_CASTEiJ_P0026249 Vezt protein_coding protein_coding MGP_CASTEiJ_T0026250.1 MGP_CASTEiJ_G0016989.1 mouse_genomes_project 10 94726153 94743330 - MGP_CASTEiJ_P0026250 Vezt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026251.1 MGP_CASTEiJ_G0016989.1 mouse_genomes_project 10 94733546 94781163 - MGP_CASTEiJ_P0026251 Vezt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026252.1 MGP_CASTEiJ_G0016989.1 mouse_genomes_project 10 94739879 94781187 - MGP_CASTEiJ_P0026252 Vezt protein_coding protein_coding MGP_CASTEiJ_T0026253.1 MGP_CASTEiJ_G0016989.1 mouse_genomes_project 10 94743266 94769729 - MGP_CASTEiJ_P0026253 Vezt protein_coding protein_coding MGP_CASTEiJ_T0026254.1 MGP_CASTEiJ_G0016989.1 mouse_genomes_project 10 94748148 94781135 - Vezt protein_coding retained_intron MGP_CASTEiJ_T0026255.1 MGP_CASTEiJ_G0016989.1 mouse_genomes_project 10 94750330 94781053 - Vezt protein_coding processed_transcript MGP_CASTEiJ_T0012080.1 MGP_CASTEiJ_G0010243.1 mouse_genomes_project 10 66571672 66591278 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0025705.1 MGP_CASTEiJ_G0016866.1 mouse_genomes_project 10 81392596 81413053 + MGP_CASTEiJ_P0025705 Map2k2 protein_coding protein_coding MGP_CASTEiJ_T0025706.1 MGP_CASTEiJ_G0016866.1 mouse_genomes_project 10 81392628 81412239 + MGP_CASTEiJ_P0025706 Map2k2 protein_coding protein_coding MGP_CASTEiJ_T0025707.1 MGP_CASTEiJ_G0016866.1 mouse_genomes_project 10 81392653 81412201 + MGP_CASTEiJ_P0025707 Map2k2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025708.1 MGP_CASTEiJ_G0016866.1 mouse_genomes_project 10 81393026 81407486 + MGP_CASTEiJ_P0025708 Map2k2 protein_coding protein_coding MGP_CASTEiJ_T0025709.1 MGP_CASTEiJ_G0016866.1 mouse_genomes_project 10 81406971 81407688 + Map2k2 protein_coding retained_intron MGP_CASTEiJ_T0025710.1 MGP_CASTEiJ_G0016866.1 mouse_genomes_project 10 81409214 81410923 + Map2k2 protein_coding retained_intron MGP_CASTEiJ_T0025711.1 MGP_CASTEiJ_G0016866.1 mouse_genomes_project 10 81410520 81412283 + Map2k2 protein_coding retained_intron MGP_CASTEiJ_T0005990.1 MGP_CASTEiJ_G0005015.1 mouse_genomes_project 10 113199294 113208274 - 4933440J02Rik lincRNA lincRNA MGP_CASTEiJ_T0005915.1 MGP_CASTEiJ_G0004965.1 mouse_genomes_project 10 19060301 19068283 + 1700021A07Rik lincRNA lincRNA MGP_CASTEiJ_T0005916.1 MGP_CASTEiJ_G0004965.1 mouse_genomes_project 10 19060389 19067464 + 1700021A07Rik lincRNA lincRNA MGP_CASTEiJ_T0005917.1 MGP_CASTEiJ_G0004965.1 mouse_genomes_project 10 19067059 19067368 + 1700021A07Rik lincRNA lincRNA MGP_CASTEiJ_T0026546.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 121718520 122391589 + MGP_CASTEiJ_P0026546 Grip1 protein_coding protein_coding MGP_CASTEiJ_T0026547.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 121718800 122378355 + MGP_CASTEiJ_P0026547 Grip1 protein_coding protein_coding MGP_CASTEiJ_T0026548.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 121718806 122379895 + MGP_CASTEiJ_P0026548 Grip1 protein_coding protein_coding MGP_CASTEiJ_T0026549.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 121982490 122379894 + MGP_CASTEiJ_P0026549 Grip1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026550.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 122101718 122379895 + MGP_CASTEiJ_P0026550 Grip1 protein_coding protein_coding MGP_CASTEiJ_T0026551.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 122101727 122379271 + MGP_CASTEiJ_P0026551 Grip1 protein_coding protein_coding MGP_CASTEiJ_T0026552.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 122101834 122305777 + Grip1 protein_coding retained_intron MGP_CASTEiJ_T0026553.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 122101841 122378355 + MGP_CASTEiJ_P0026553 Grip1 protein_coding protein_coding MGP_CASTEiJ_T0026554.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 122101841 122378355 + MGP_CASTEiJ_P0026554 Grip1 protein_coding protein_coding MGP_CASTEiJ_T0026555.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 122101844 122378280 + MGP_CASTEiJ_P0026555 Grip1 protein_coding protein_coding MGP_CASTEiJ_T0026556.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 122101854 122391387 + MGP_CASTEiJ_P0026556 Grip1 protein_coding protein_coding MGP_CASTEiJ_T0026557.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 122136136 122379890 + Grip1 protein_coding retained_intron MGP_CASTEiJ_T0026558.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 122150588 122396668 + MGP_CASTEiJ_P0026558 Grip1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026559.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 122196977 122378280 + Grip1 protein_coding processed_transcript MGP_CASTEiJ_T0026560.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 122285561 122391590 + MGP_CASTEiJ_P0026560 Grip1 protein_coding protein_coding MGP_CASTEiJ_T0026561.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 122285763 122379767 + MGP_CASTEiJ_P0026561 Grip1 protein_coding protein_coding MGP_CASTEiJ_T0026562.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 122285911 122378551 + MGP_CASTEiJ_P0026562 Grip1 protein_coding protein_coding MGP_CASTEiJ_T0026563.1 MGP_CASTEiJ_G0017094.1 mouse_genomes_project 10 122285947 122391589 + MGP_CASTEiJ_P0026563 Grip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009392.1 MGP_CASTEiJ_G0007580.1 mouse_genomes_project 10 129832653 129832774 + Mir546 miRNA miRNA MGP_CASTEiJ_T0025053.1 MGP_CASTEiJ_G0016685.1 mouse_genomes_project 10 75230545 75407614 - MGP_CASTEiJ_P0025053 Gucd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025058.1 MGP_CASTEiJ_G0016685.1 mouse_genomes_project 10 75297636 75401585 - MGP_CASTEiJ_P0025058 Gucd1 protein_coding protein_coding MGP_CASTEiJ_T0025060.1 MGP_CASTEiJ_G0016685.1 mouse_genomes_project 10 75397117 75407537 - MGP_CASTEiJ_P0025060 Gucd1 protein_coding protein_coding MGP_CASTEiJ_T0025061.1 MGP_CASTEiJ_G0016685.1 mouse_genomes_project 10 75399101 75407630 - MGP_CASTEiJ_P0025061 Gucd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025062.1 MGP_CASTEiJ_G0016685.1 mouse_genomes_project 10 75399135 75401568 - Gucd1 protein_coding retained_intron MGP_CASTEiJ_T0025063.1 MGP_CASTEiJ_G0016685.1 mouse_genomes_project 10 75399268 75407511 - MGP_CASTEiJ_P0025063 Gucd1 protein_coding protein_coding MGP_CASTEiJ_T0025064.1 MGP_CASTEiJ_G0016685.1 mouse_genomes_project 10 75401483 75407601 - MGP_CASTEiJ_P0025064 Gucd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026968.1 MGP_CASTEiJ_G0017253.1 mouse_genomes_project 10 133077601 133078540 - MGP_CASTEiJ_P0026968 Olfr816 protein_coding protein_coding MGP_CASTEiJ_T0000793.1 MGP_CASTEiJ_G0000733.1 mouse_genomes_project 10 115822209 115822813 + TEC TEC MGP_CASTEiJ_T0024209.1 MGP_CASTEiJ_G0016467.1 mouse_genomes_project 10 32104690 32153300 + MGP_CASTEiJ_P0024209 Sult3a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024501.1 MGP_CASTEiJ_G0016564.1 mouse_genomes_project 10 52593640 52606105 + MGP_CASTEiJ_P0024501 Asf1a protein_coding protein_coding MGP_CASTEiJ_T0099181.1 MGP_CASTEiJ_G0036094.1 mouse_genomes_project 10 66541586 66541687 - Gm26359 snRNA snRNA MGP_CASTEiJ_T0024201.1 MGP_CASTEiJ_G0016462.1 mouse_genomes_project 10 29638612 29773069 - MGP_CASTEiJ_P0024201 Rnf217 protein_coding protein_coding MGP_CASTEiJ_T0024385.1 MGP_CASTEiJ_G0016523.1 mouse_genomes_project 10 40996488 41172062 - MGP_CASTEiJ_P0024385 Lace1 protein_coding protein_coding MGP_CASTEiJ_T0024386.1 MGP_CASTEiJ_G0016523.1 mouse_genomes_project 10 40996496 41172076 - MGP_CASTEiJ_P0024386 Lace1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024387.1 MGP_CASTEiJ_G0016523.1 mouse_genomes_project 10 40997568 41108905 - MGP_CASTEiJ_P0024387 Lace1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0099198.1 MGP_CASTEiJ_G0036111.1 mouse_genomes_project 10 105740172 105740329 - Gm22945 snRNA snRNA MGP_CASTEiJ_T0101504.1 MGP_CASTEiJ_G0038405.1 mouse_genomes_project 10 26940288 26979069 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101505.1 MGP_CASTEiJ_G0038405.1 mouse_genomes_project 10 26978732 26979849 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0023852.1 MGP_CASTEiJ_G0016352.1 mouse_genomes_project 10 7765545 7780718 - MGP_CASTEiJ_P0023852 Rab32 protein_coding protein_coding MGP_CASTEiJ_T0024495.1 MGP_CASTEiJ_G0016560.1 mouse_genomes_project 10 51623289 52070595 + MGP_CASTEiJ_P0024495 Slc35f1 protein_coding protein_coding MGP_CASTEiJ_T0024874.1 MGP_CASTEiJ_G0016661.1 mouse_genomes_project 10 67828535 67938071 - MGP_CASTEiJ_P0024874 1700040L02Rik protein_coding protein_coding MGP_CASTEiJ_T0024875.1 MGP_CASTEiJ_G0016661.1 mouse_genomes_project 10 67833854 67921880 - MGP_CASTEiJ_P0024875 1700040L02Rik protein_coding protein_coding MGP_CASTEiJ_T0026984.1 MGP_CASTEiJ_G0017266.1 mouse_genomes_project 10 133467965 133482381 - MGP_CASTEiJ_P0026984 Neurod4 protein_coding protein_coding MGP_CASTEiJ_T0100379.1 MGP_CASTEiJ_G0037292.1 mouse_genomes_project 10 71474337 71474468 + Gm22937 snoRNA snoRNA MGP_CASTEiJ_T0023903.1 MGP_CASTEiJ_G0016363.1 mouse_genomes_project 10 10429329 10443644 - MGP_CASTEiJ_P0023903 Ltv1 protein_coding protein_coding MGP_CASTEiJ_T0024699.1 MGP_CASTEiJ_G0016620.1 mouse_genomes_project 10 60735142 60785515 - MGP_CASTEiJ_P0024699 H2afy2 protein_coding protein_coding MGP_CASTEiJ_T0024700.1 MGP_CASTEiJ_G0016620.1 mouse_genomes_project 10 60735452 60836227 - MGP_CASTEiJ_P0024700 H2afy2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002999.1 MGP_CASTEiJ_G0002800.1 mouse_genomes_project 10 124266011 124267263 + C030027H14Rik antisense antisense MGP_CASTEiJ_T0024520.1 MGP_CASTEiJ_G0016570.1 mouse_genomes_project 10 55751647 55755264 + MGP_CASTEiJ_P0024520 Gm9956 protein_coding protein_coding MGP_CASTEiJ_T0002938.1 MGP_CASTEiJ_G0002756.1 mouse_genomes_project 10 67391096 67391957 - Gm16212 antisense antisense MGP_CASTEiJ_T0002939.1 MGP_CASTEiJ_G0002756.1 mouse_genomes_project 10 67391671 67392281 - Gm16212 antisense antisense MGP_CASTEiJ_T0024192.1 MGP_CASTEiJ_G0016458.1 mouse_genomes_project 10 28987201 28997653 - MGP_CASTEiJ_P0024192 Hey2 protein_coding protein_coding MGP_CASTEiJ_T0025893.1 MGP_CASTEiJ_G0016906.1 mouse_genomes_project 10 82287403 82306462 - MGP_CASTEiJ_P0025893 Zfp938 protein_coding protein_coding MGP_CASTEiJ_T0025894.1 MGP_CASTEiJ_G0016906.1 mouse_genomes_project 10 82287407 82306469 - MGP_CASTEiJ_P0025894 Zfp938 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0101964.1 MGP_CASTEiJ_G0038689.1 mouse_genomes_project 10 98161363 98161541 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0026293.1 MGP_CASTEiJ_G0017004.1 mouse_genomes_project 10 98468098 98508649 + MGP_CASTEiJ_P0026293 Dcn protein_coding protein_coding MGP_CASTEiJ_T0026294.1 MGP_CASTEiJ_G0017004.1 mouse_genomes_project 10 98470948 98508649 + MGP_CASTEiJ_P0026294 Dcn protein_coding protein_coding MGP_CASTEiJ_T0025739.1 MGP_CASTEiJ_G0016875.1 mouse_genomes_project 10 81554031 81563858 + MGP_CASTEiJ_P0025739 Matk protein_coding protein_coding MGP_CASTEiJ_T0025740.1 MGP_CASTEiJ_G0016875.1 mouse_genomes_project 10 81558177 81564238 + MGP_CASTEiJ_P0025740 Matk protein_coding protein_coding MGP_CASTEiJ_T0025741.1 MGP_CASTEiJ_G0016875.1 mouse_genomes_project 10 81558177 81564238 + MGP_CASTEiJ_P0025741 Matk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025742.1 MGP_CASTEiJ_G0016875.1 mouse_genomes_project 10 81558177 81563854 + MGP_CASTEiJ_P0025742 Matk protein_coding protein_coding MGP_CASTEiJ_T0025743.1 MGP_CASTEiJ_G0016875.1 mouse_genomes_project 10 81558183 81563854 + MGP_CASTEiJ_P0025743 Matk protein_coding protein_coding MGP_CASTEiJ_T0025744.1 MGP_CASTEiJ_G0016875.1 mouse_genomes_project 10 81558220 81563858 + Matk protein_coding retained_intron MGP_CASTEiJ_T0025745.1 MGP_CASTEiJ_G0016875.1 mouse_genomes_project 10 81558326 81561403 + Matk protein_coding retained_intron MGP_CASTEiJ_T0025746.1 MGP_CASTEiJ_G0016875.1 mouse_genomes_project 10 81558708 81560530 + MGP_CASTEiJ_P0025746 Matk protein_coding protein_coding MGP_CASTEiJ_T0025747.1 MGP_CASTEiJ_G0016875.1 mouse_genomes_project 10 81558796 81563848 + MGP_CASTEiJ_P0025747 Matk protein_coding protein_coding MGP_CASTEiJ_T0025748.1 MGP_CASTEiJ_G0016875.1 mouse_genomes_project 10 81559093 81563786 + Matk protein_coding retained_intron MGP_CASTEiJ_T0025749.1 MGP_CASTEiJ_G0016875.1 mouse_genomes_project 10 81562046 81563540 + Matk protein_coding retained_intron MGP_CASTEiJ_T0024014.1 MGP_CASTEiJ_G0016395.1 mouse_genomes_project 10 17691074 17829919 + MGP_CASTEiJ_P0024014 Map7 protein_coding protein_coding MGP_CASTEiJ_T0024015.1 MGP_CASTEiJ_G0016395.1 mouse_genomes_project 10 17691532 17834418 + MGP_CASTEiJ_P0024015 Map7 protein_coding protein_coding MGP_CASTEiJ_T0024072.1 MGP_CASTEiJ_G0016412.1 mouse_genomes_project 10 20826568 21086164 - MGP_CASTEiJ_P0024072 Eya4 protein_coding protein_coding MGP_CASTEiJ_T0024073.1 MGP_CASTEiJ_G0016412.1 mouse_genomes_project 10 20827149 21086156 - MGP_CASTEiJ_P0024073 Eya4 protein_coding protein_coding MGP_CASTEiJ_T0025128.1 MGP_CASTEiJ_G0016708.1 mouse_genomes_project 10 76103000 76151557 + MGP_CASTEiJ_P0025128 Slc5a4a protein_coding protein_coding MGP_CASTEiJ_T0026119.1 MGP_CASTEiJ_G0016965.1 mouse_genomes_project 10 89892573 89930197 - MGP_CASTEiJ_P0026119 Gas2l3 protein_coding protein_coding MGP_CASTEiJ_T0026120.1 MGP_CASTEiJ_G0016965.1 mouse_genomes_project 10 89892573 89930197 - MGP_CASTEiJ_P0026120 Gas2l3 protein_coding protein_coding MGP_CASTEiJ_T0012091.1 MGP_CASTEiJ_G0010254.1 mouse_genomes_project 10 94385880 94386318 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100400.1 MGP_CASTEiJ_G0037313.1 mouse_genomes_project 10 122968176 122968236 + Gm24298 snoRNA snoRNA MGP_CASTEiJ_T0024459.1 MGP_CASTEiJ_G0016546.1 mouse_genomes_project 10 48010875 48755886 - MGP_CASTEiJ_P0024459 Grik2 protein_coding protein_coding MGP_CASTEiJ_T0024460.1 MGP_CASTEiJ_G0016546.1 mouse_genomes_project 10 48011258 48171561 - Grik2 protein_coding retained_intron MGP_CASTEiJ_T0024461.1 MGP_CASTEiJ_G0016546.1 mouse_genomes_project 10 48011258 48750345 - MGP_CASTEiJ_P0024461 Grik2 protein_coding protein_coding MGP_CASTEiJ_T0024462.1 MGP_CASTEiJ_G0016546.1 mouse_genomes_project 10 48012142 48750345 - MGP_CASTEiJ_P0024462 Grik2 protein_coding protein_coding MGP_CASTEiJ_T0024463.1 MGP_CASTEiJ_G0016546.1 mouse_genomes_project 10 48012404 48750495 - MGP_CASTEiJ_P0024463 Grik2 protein_coding protein_coding MGP_CASTEiJ_T0024464.1 MGP_CASTEiJ_G0016546.1 mouse_genomes_project 10 48012546 48015349 - Grik2 protein_coding retained_intron MGP_CASTEiJ_T0024465.1 MGP_CASTEiJ_G0016546.1 mouse_genomes_project 10 48016425 48750345 - MGP_CASTEiJ_P0024465 Grik2 protein_coding protein_coding MGP_CASTEiJ_T0024466.1 MGP_CASTEiJ_G0016546.1 mouse_genomes_project 10 48444069 48755874 - MGP_CASTEiJ_P0024466 Grik2 protein_coding protein_coding MGP_CASTEiJ_T0016398.1 MGP_CASTEiJ_G0014455.1 mouse_genomes_project 10 122697295 122716600 + 1700006J14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016399.1 MGP_CASTEiJ_G0014455.1 mouse_genomes_project 10 122697296 122718110 + 1700006J14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016400.1 MGP_CASTEiJ_G0014455.1 mouse_genomes_project 10 122697308 122714496 + 1700006J14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016401.1 MGP_CASTEiJ_G0014455.1 mouse_genomes_project 10 122697349 122717596 + 1700006J14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0025826.1 MGP_CASTEiJ_G0016893.1 mouse_genomes_project 10 81827213 81833038 - Gna15 protein_coding retained_intron MGP_CASTEiJ_T0025827.1 MGP_CASTEiJ_G0016893.1 mouse_genomes_project 10 81827220 81852848 - MGP_CASTEiJ_P0025827 Gna15 protein_coding protein_coding MGP_CASTEiJ_T0025828.1 MGP_CASTEiJ_G0016893.1 mouse_genomes_project 10 81827994 81837194 - Gna15 protein_coding retained_intron MGP_CASTEiJ_T0024175.1 MGP_CASTEiJ_G0016451.1 mouse_genomes_project 10 27394927 27430330 + MGP_CASTEiJ_P0024175 Echdc1 protein_coding protein_coding MGP_CASTEiJ_T0024176.1 MGP_CASTEiJ_G0016451.1 mouse_genomes_project 10 27395042 27429046 + MGP_CASTEiJ_P0024176 Echdc1 protein_coding protein_coding MGP_CASTEiJ_T0024177.1 MGP_CASTEiJ_G0016451.1 mouse_genomes_project 10 27395269 27431430 + MGP_CASTEiJ_P0024177 Echdc1 protein_coding protein_coding MGP_CASTEiJ_T0024178.1 MGP_CASTEiJ_G0016451.1 mouse_genomes_project 10 27395432 27418504 + Echdc1 protein_coding processed_transcript MGP_CASTEiJ_T0005988.1 MGP_CASTEiJ_G0005013.1 mouse_genomes_project 10 107746251 107750138 - C230021G24Rik lincRNA lincRNA MGP_CASTEiJ_T0012050.1 MGP_CASTEiJ_G0010213.1 mouse_genomes_project 10 21797777 21798414 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024473.1 MGP_CASTEiJ_G0016551.1 mouse_genomes_project 10 50664185 50713831 + Rfx6 protein_coding retained_intron MGP_CASTEiJ_T0024474.1 MGP_CASTEiJ_G0016551.1 mouse_genomes_project 10 50664185 50723704 + MGP_CASTEiJ_P0024474 Rfx6 protein_coding protein_coding MGP_CASTEiJ_T0024475.1 MGP_CASTEiJ_G0016551.1 mouse_genomes_project 10 50671893 50723704 + MGP_CASTEiJ_P0024475 Rfx6 protein_coding protein_coding MGP_CASTEiJ_T0000304.1 MGP_CASTEiJ_G0000253.1 mouse_genomes_project 10 85251246 85251314 + mt-Tp Mt_tRNA Mt_tRNA MGP_CASTEiJ_T0025398.1 MGP_CASTEiJ_G0016792.1 mouse_genomes_project 10 79974899 79984513 + MGP_CASTEiJ_P0025398 Misp protein_coding protein_coding MGP_CASTEiJ_T0025399.1 MGP_CASTEiJ_G0016792.1 mouse_genomes_project 10 79976502 79984513 + MGP_CASTEiJ_P0025399 Misp protein_coding protein_coding MGP_CASTEiJ_T0026663.1 MGP_CASTEiJ_G0017127.1 mouse_genomes_project 10 129907852 129912261 + MGP_CASTEiJ_P0026663 Cdk4 protein_coding protein_coding MGP_CASTEiJ_T0026664.1 MGP_CASTEiJ_G0017127.1 mouse_genomes_project 10 129907921 129911334 + MGP_CASTEiJ_P0026664 Cdk4 protein_coding protein_coding MGP_CASTEiJ_T0026665.1 MGP_CASTEiJ_G0017127.1 mouse_genomes_project 10 129907922 129910514 + MGP_CASTEiJ_P0026665 Cdk4 protein_coding protein_coding MGP_CASTEiJ_T0026666.1 MGP_CASTEiJ_G0017127.1 mouse_genomes_project 10 129907927 129911334 + MGP_CASTEiJ_P0026666 Cdk4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026667.1 MGP_CASTEiJ_G0017127.1 mouse_genomes_project 10 129907932 129911628 + Cdk4 protein_coding retained_intron MGP_CASTEiJ_T0026668.1 MGP_CASTEiJ_G0017127.1 mouse_genomes_project 10 129907934 129909603 + Cdk4 protein_coding retained_intron MGP_CASTEiJ_T0026669.1 MGP_CASTEiJ_G0017127.1 mouse_genomes_project 10 129908186 129910568 + MGP_CASTEiJ_P0026669 Cdk4 protein_coding protein_coding MGP_CASTEiJ_T0026670.1 MGP_CASTEiJ_G0017127.1 mouse_genomes_project 10 129908616 129909638 + Cdk4 protein_coding retained_intron MGP_CASTEiJ_T0026671.1 MGP_CASTEiJ_G0017127.1 mouse_genomes_project 10 129910412 129911566 + Cdk4 protein_coding retained_intron MGP_CASTEiJ_T0023788.1 MGP_CASTEiJ_G0016337.1 mouse_genomes_project 10 4691686 4712543 + MGP_CASTEiJ_P0023788 Lrp11 protein_coding protein_coding MGP_CASTEiJ_T0023789.1 MGP_CASTEiJ_G0016337.1 mouse_genomes_project 10 4691703 4730734 + MGP_CASTEiJ_P0023789 Lrp11 protein_coding protein_coding MGP_CASTEiJ_T0023790.1 MGP_CASTEiJ_G0016337.1 mouse_genomes_project 10 4691865 4730734 + MGP_CASTEiJ_P0023790 Lrp11 protein_coding protein_coding MGP_CASTEiJ_T0023791.1 MGP_CASTEiJ_G0016337.1 mouse_genomes_project 10 4692013 4729271 + MGP_CASTEiJ_P0023791 Lrp11 protein_coding protein_coding MGP_CASTEiJ_T0023792.1 MGP_CASTEiJ_G0016337.1 mouse_genomes_project 10 4699435 4729001 + MGP_CASTEiJ_P0023792 Lrp11 protein_coding protein_coding MGP_CASTEiJ_T0026017.1 MGP_CASTEiJ_G0016942.1 mouse_genomes_project 10 87035130 87039147 + MGP_CASTEiJ_P0026017 1190007I07Rik protein_coding protein_coding MGP_CASTEiJ_T0026018.1 MGP_CASTEiJ_G0016942.1 mouse_genomes_project 10 87035159 87039238 + MGP_CASTEiJ_P0026018 1190007I07Rik protein_coding protein_coding MGP_CASTEiJ_T0026019.1 MGP_CASTEiJ_G0016942.1 mouse_genomes_project 10 87035165 87039062 + MGP_CASTEiJ_P0026019 1190007I07Rik protein_coding protein_coding MGP_CASTEiJ_T0026020.1 MGP_CASTEiJ_G0016942.1 mouse_genomes_project 10 87035218 87035979 + MGP_CASTEiJ_P0026020 1190007I07Rik protein_coding protein_coding MGP_CASTEiJ_T0026021.1 MGP_CASTEiJ_G0016942.1 mouse_genomes_project 10 87035431 87039238 + MGP_CASTEiJ_P0026021 1190007I07Rik protein_coding protein_coding MGP_CASTEiJ_T0025181.1 MGP_CASTEiJ_G0016723.1 mouse_genomes_project 10 77059156 77069294 + MGP_CASTEiJ_P0025181 Slc19a1 protein_coding protein_coding MGP_CASTEiJ_T0025182.1 MGP_CASTEiJ_G0016723.1 mouse_genomes_project 10 77059186 77068780 + MGP_CASTEiJ_P0025182 Slc19a1 protein_coding protein_coding MGP_CASTEiJ_T0025183.1 MGP_CASTEiJ_G0016723.1 mouse_genomes_project 10 77059600 77077385 + MGP_CASTEiJ_P0025183 Slc19a1 protein_coding protein_coding MGP_CASTEiJ_T0025184.1 MGP_CASTEiJ_G0016723.1 mouse_genomes_project 10 77060128 77077384 + MGP_CASTEiJ_P0025184 Slc19a1 protein_coding protein_coding MGP_CASTEiJ_T0025185.1 MGP_CASTEiJ_G0016723.1 mouse_genomes_project 10 77060184 77073203 + MGP_CASTEiJ_P0025185 Slc19a1 protein_coding protein_coding MGP_CASTEiJ_T0025186.1 MGP_CASTEiJ_G0016723.1 mouse_genomes_project 10 77060197 77069889 + MGP_CASTEiJ_P0025186 Slc19a1 protein_coding protein_coding MGP_CASTEiJ_T0025187.1 MGP_CASTEiJ_G0016723.1 mouse_genomes_project 10 77060235 77069263 + MGP_CASTEiJ_P0025187 Slc19a1 protein_coding protein_coding MGP_CASTEiJ_T0025188.1 MGP_CASTEiJ_G0016723.1 mouse_genomes_project 10 77069432 77071833 + Slc19a1 protein_coding retained_intron MGP_CASTEiJ_T0025189.1 MGP_CASTEiJ_G0016723.1 mouse_genomes_project 10 77069723 77087982 + MGP_CASTEiJ_P0025189 Slc19a1 protein_coding protein_coding MGP_CASTEiJ_T0099169.1 MGP_CASTEiJ_G0036082.1 mouse_genomes_project 10 43615519 43615634 + Gm22503 snRNA snRNA MGP_CASTEiJ_T0023831.1 MGP_CASTEiJ_G0016347.1 mouse_genomes_project 10 5835308 6010242 - MGP_CASTEiJ_P0023831 Sash1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023832.1 MGP_CASTEiJ_G0016347.1 mouse_genomes_project 10 5835318 6010454 - MGP_CASTEiJ_P0023832 Sash1 protein_coding protein_coding MGP_CASTEiJ_T0024832.1 MGP_CASTEiJ_G0016650.1 mouse_genomes_project 10 63107009 63109614 - MGP_CASTEiJ_P0024832 protein_coding protein_coding MGP_CASTEiJ_T0026351.1 MGP_CASTEiJ_G0017026.1 mouse_genomes_project 10 104240832 104265644 - MGP_CASTEiJ_P0026351 Alx1 protein_coding protein_coding MGP_CASTEiJ_T0026352.1 MGP_CASTEiJ_G0017026.1 mouse_genomes_project 10 104240833 104264490 - MGP_CASTEiJ_P0026352 Alx1 protein_coding protein_coding MGP_CASTEiJ_T0026353.1 MGP_CASTEiJ_G0017026.1 mouse_genomes_project 10 104241137 104258493 - Alx1 protein_coding processed_transcript MGP_CASTEiJ_T0024189.1 MGP_CASTEiJ_G0016457.1 mouse_genomes_project 10 28783252 28927007 - MGP_CASTEiJ_P0024189 Ncoa7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024190.1 MGP_CASTEiJ_G0016457.1 mouse_genomes_project 10 28783253 28794129 - MGP_CASTEiJ_P0024190 Ncoa7 protein_coding protein_coding MGP_CASTEiJ_T0024191.1 MGP_CASTEiJ_G0016457.1 mouse_genomes_project 10 28783253 28959950 - MGP_CASTEiJ_P0024191 Ncoa7 protein_coding protein_coding MGP_CASTEiJ_T0026011.1 MGP_CASTEiJ_G0016941.1 mouse_genomes_project 10 86606977 86655981 + MGP_CASTEiJ_P0026011 Timp3 protein_coding protein_coding MGP_CASTEiJ_T0026012.1 MGP_CASTEiJ_G0016941.1 mouse_genomes_project 10 86607159 86613390 + Timp3 protein_coding processed_transcript MGP_CASTEiJ_T0026013.1 MGP_CASTEiJ_G0016941.1 mouse_genomes_project 10 86607161 86633354 + Timp3 protein_coding processed_transcript MGP_CASTEiJ_T0026014.1 MGP_CASTEiJ_G0016941.1 mouse_genomes_project 10 86609447 86650473 + MGP_CASTEiJ_P0026014 Timp3 protein_coding protein_coding MGP_CASTEiJ_T0100383.1 MGP_CASTEiJ_G0037296.1 mouse_genomes_project 10 81473612 81473676 + Snord37 snoRNA snoRNA MGP_CASTEiJ_T0023876.1 MGP_CASTEiJ_G0016360.1 mouse_genomes_project 10 10241164 10245028 + MGP_CASTEiJ_P0023876 Sf3b5 protein_coding protein_coding MGP_CASTEiJ_T0026924.1 MGP_CASTEiJ_G0017219.1 mouse_genomes_project 10 132136185 132165032 - MGP_CASTEiJ_P0026924 protein_coding protein_coding MGP_CASTEiJ_T0025396.1 MGP_CASTEiJ_G0016791.1 mouse_genomes_project 10 79943537 79974778 + MGP_CASTEiJ_P0025396 Palm protein_coding protein_coding MGP_CASTEiJ_T0025397.1 MGP_CASTEiJ_G0016791.1 mouse_genomes_project 10 79943537 79974778 + MGP_CASTEiJ_P0025397 Palm protein_coding protein_coding MGP_CASTEiJ_T0026866.1 MGP_CASTEiJ_G0017191.1 mouse_genomes_project 10 131524008 131528521 - MGP_CASTEiJ_P0026866 Myl6b protein_coding protein_coding MGP_CASTEiJ_T0026711.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130258347 130329521 + MGP_CASTEiJ_P0026711 R3hdm2 protein_coding protein_coding MGP_CASTEiJ_T0026712.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130258682 130389948 + MGP_CASTEiJ_P0026712 R3hdm2 protein_coding protein_coding MGP_CASTEiJ_T0026713.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130279155 130389970 + MGP_CASTEiJ_P0026713 R3hdm2 protein_coding protein_coding MGP_CASTEiJ_T0026714.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130279155 130389970 + MGP_CASTEiJ_P0026714 R3hdm2 protein_coding protein_coding MGP_CASTEiJ_T0026715.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130301394 130337714 + MGP_CASTEiJ_P0026715 R3hdm2 protein_coding protein_coding MGP_CASTEiJ_T0026716.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130301924 130389937 + MGP_CASTEiJ_P0026716 R3hdm2 protein_coding protein_coding MGP_CASTEiJ_T0026717.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130302181 130389620 + MGP_CASTEiJ_P0026717 R3hdm2 protein_coding protein_coding MGP_CASTEiJ_T0026718.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130302289 130338488 + MGP_CASTEiJ_P0026718 R3hdm2 protein_coding protein_coding MGP_CASTEiJ_T0026719.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130329440 130389298 + MGP_CASTEiJ_P0026719 R3hdm2 protein_coding protein_coding MGP_CASTEiJ_T0026720.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130329440 130389971 + MGP_CASTEiJ_P0026720 R3hdm2 protein_coding protein_coding MGP_CASTEiJ_T0026721.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130329440 130389954 + MGP_CASTEiJ_P0026721 R3hdm2 protein_coding protein_coding MGP_CASTEiJ_T0026722.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130329440 130389298 + MGP_CASTEiJ_P0026722 R3hdm2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026723.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130347345 130353059 + MGP_CASTEiJ_P0026723 R3hdm2 protein_coding protein_coding MGP_CASTEiJ_T0026724.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130347371 130353189 + R3hdm2 protein_coding retained_intron MGP_CASTEiJ_T0026725.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130347375 130389970 + MGP_CASTEiJ_P0026725 R3hdm2 protein_coding protein_coding MGP_CASTEiJ_T0026726.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130347415 130372861 + R3hdm2 protein_coding processed_transcript MGP_CASTEiJ_T0026727.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130370022 130373252 + R3hdm2 protein_coding retained_intron MGP_CASTEiJ_T0026728.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130373994 130382484 + R3hdm2 protein_coding retained_intron MGP_CASTEiJ_T0026729.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130374190 130384890 + MGP_CASTEiJ_P0026729 R3hdm2 protein_coding protein_coding MGP_CASTEiJ_T0026730.1 MGP_CASTEiJ_G0017145.1 mouse_genomes_project 10 130382416 130389954 + MGP_CASTEiJ_P0026730 R3hdm2 protein_coding protein_coding MGP_CASTEiJ_T0025432.1 MGP_CASTEiJ_G0016798.1 mouse_genomes_project 10 80056314 80074216 - MGP_CASTEiJ_P0025432 Med16 protein_coding protein_coding MGP_CASTEiJ_T0025433.1 MGP_CASTEiJ_G0016798.1 mouse_genomes_project 10 80056546 80074193 - MGP_CASTEiJ_P0025433 Med16 protein_coding protein_coding MGP_CASTEiJ_T0025434.1 MGP_CASTEiJ_G0016798.1 mouse_genomes_project 10 80061525 80062985 - Med16 protein_coding retained_intron MGP_CASTEiJ_T0025435.1 MGP_CASTEiJ_G0016798.1 mouse_genomes_project 10 80065182 80074113 - Med16 protein_coding retained_intron MGP_CASTEiJ_T0025436.1 MGP_CASTEiJ_G0016798.1 mouse_genomes_project 10 80066526 80074205 - MGP_CASTEiJ_P0025436 Med16 protein_coding protein_coding MGP_CASTEiJ_T0025437.1 MGP_CASTEiJ_G0016798.1 mouse_genomes_project 10 80066702 80073616 - MGP_CASTEiJ_P0025437 Med16 protein_coding protein_coding MGP_CASTEiJ_T0025438.1 MGP_CASTEiJ_G0016798.1 mouse_genomes_project 10 80066729 80074218 - MGP_CASTEiJ_P0025438 Med16 protein_coding protein_coding MGP_CASTEiJ_T0024516.1 MGP_CASTEiJ_G0016567.1 mouse_genomes_project 10 55012095 55238073 - MGP_CASTEiJ_P0024516 Tbc1d32 protein_coding protein_coding MGP_CASTEiJ_T0024518.1 MGP_CASTEiJ_G0016567.1 mouse_genomes_project 10 55220622 55238082 - MGP_CASTEiJ_P0024518 Tbc1d32 protein_coding unknown_likely_coding MGP_CASTEiJ_T0023974.1 MGP_CASTEiJ_G0016381.1 mouse_genomes_project 10 15836563 15975206 + MGP_CASTEiJ_P0023974 Nhsl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0023975.1 MGP_CASTEiJ_G0016381.1 mouse_genomes_project 10 15853778 15868658 + Nhsl1 protein_coding processed_transcript MGP_CASTEiJ_T0023976.1 MGP_CASTEiJ_G0016381.1 mouse_genomes_project 10 15853815 15963497 + Nhsl1 protein_coding retained_intron MGP_CASTEiJ_T0023977.1 MGP_CASTEiJ_G0016381.1 mouse_genomes_project 10 15853815 15986299 + MGP_CASTEiJ_P0023977 Nhsl1 protein_coding protein_coding MGP_CASTEiJ_T0023978.1 MGP_CASTEiJ_G0016381.1 mouse_genomes_project 10 15919849 15923369 + Nhsl1 protein_coding retained_intron MGP_CASTEiJ_T0023979.1 MGP_CASTEiJ_G0016381.1 mouse_genomes_project 10 15919929 15947789 + Nhsl1 protein_coding processed_transcript MGP_CASTEiJ_T0023980.1 MGP_CASTEiJ_G0016381.1 mouse_genomes_project 10 15919942 15986296 + MGP_CASTEiJ_P0023980 Nhsl1 protein_coding protein_coding MGP_CASTEiJ_T0023981.1 MGP_CASTEiJ_G0016381.1 mouse_genomes_project 10 15919942 15976876 + MGP_CASTEiJ_P0023981 Nhsl1 protein_coding protein_coding MGP_CASTEiJ_T0026474.1 MGP_CASTEiJ_G0017071.1 mouse_genomes_project 10 118431176 118499838 - MGP_CASTEiJ_P0026474 Kcnmb4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026475.1 MGP_CASTEiJ_G0017071.1 mouse_genomes_project 10 118457619 118499721 - MGP_CASTEiJ_P0026475 Kcnmb4 protein_coding protein_coding MGP_CASTEiJ_T0026476.1 MGP_CASTEiJ_G0017071.1 mouse_genomes_project 10 118487648 118499708 - MGP_CASTEiJ_P0026476 Kcnmb4 protein_coding protein_coding MGP_CASTEiJ_T0026655.1 MGP_CASTEiJ_G0017124.1 mouse_genomes_project 10 129880086 129881915 + MGP_CASTEiJ_P0026655 Mettl1 protein_coding protein_coding MGP_CASTEiJ_T0026656.1 MGP_CASTEiJ_G0017124.1 mouse_genomes_project 10 129880629 129882749 + Mettl1 protein_coding retained_intron MGP_CASTEiJ_T0026657.1 MGP_CASTEiJ_G0017124.1 mouse_genomes_project 10 129880651 129884167 + MGP_CASTEiJ_P0026657 Mettl1 protein_coding protein_coding MGP_CASTEiJ_T0026658.1 MGP_CASTEiJ_G0017124.1 mouse_genomes_project 10 129880655 129887069 + MGP_CASTEiJ_P0026658 Mettl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025117.1 MGP_CASTEiJ_G0016703.1 mouse_genomes_project 10 75844758 75845530 - MGP_CASTEiJ_P0025117 Mmp11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025118.1 MGP_CASTEiJ_G0016703.1 mouse_genomes_project 10 75844758 75854029 - MGP_CASTEiJ_P0025118 Mmp11 protein_coding protein_coding MGP_CASTEiJ_T0025119.1 MGP_CASTEiJ_G0016703.1 mouse_genomes_project 10 75844758 75854056 - MGP_CASTEiJ_P0025119 Mmp11 protein_coding protein_coding MGP_CASTEiJ_T0025120.1 MGP_CASTEiJ_G0016703.1 mouse_genomes_project 10 75844759 75847950 - MGP_CASTEiJ_P0025120 Mmp11 protein_coding protein_coding MGP_CASTEiJ_T0025121.1 MGP_CASTEiJ_G0016703.1 mouse_genomes_project 10 75848297 75849228 - Mmp11 protein_coding retained_intron MGP_CASTEiJ_T0023741.1 MGP_CASTEiJ_G0016330.1 mouse_genomes_project 10 2906899 2921266 - MGP_CASTEiJ_P0023741 Mtrf1l protein_coding protein_coding MGP_CASTEiJ_T0023742.1 MGP_CASTEiJ_G0016330.1 mouse_genomes_project 10 2908240 2911938 - Mtrf1l protein_coding processed_transcript MGP_CASTEiJ_T0023743.1 MGP_CASTEiJ_G0016330.1 mouse_genomes_project 10 2915174 2920902 - Mtrf1l protein_coding processed_transcript MGP_CASTEiJ_T0025338.1 MGP_CASTEiJ_G0016774.1 mouse_genomes_project 10 79658548 79665853 - Plpp2 protein_coding processed_transcript MGP_CASTEiJ_T0025339.1 MGP_CASTEiJ_G0016774.1 mouse_genomes_project 10 79659250 79665786 - MGP_CASTEiJ_P0025339 Plpp2 protein_coding protein_coding MGP_CASTEiJ_T0025340.1 MGP_CASTEiJ_G0016774.1 mouse_genomes_project 10 79659605 79665883 - MGP_CASTEiJ_P0025340 Plpp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024342.1 MGP_CASTEiJ_G0016514.1 mouse_genomes_project 10 40117123 40142666 + MGP_CASTEiJ_P0024342 Ppil6 protein_coding protein_coding MGP_CASTEiJ_T0024343.1 MGP_CASTEiJ_G0016514.1 mouse_genomes_project 10 40129883 40142584 + MGP_CASTEiJ_P0024343 Ppil6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025180.1 MGP_CASTEiJ_G0016722.1 mouse_genomes_project 10 77039543 77049123 + MGP_CASTEiJ_P0025180 Gm10787 protein_coding protein_coding MGP_CASTEiJ_T0026635.1 MGP_CASTEiJ_G0017117.1 mouse_genomes_project 10 127927088 128031379 - MGP_CASTEiJ_P0026635 Slc16a7 protein_coding protein_coding MGP_CASTEiJ_T0026636.1 MGP_CASTEiJ_G0017117.1 mouse_genomes_project 10 127928123 128009092 - MGP_CASTEiJ_P0026636 Slc16a7 protein_coding protein_coding MGP_CASTEiJ_T0026297.1 MGP_CASTEiJ_G0017007.1 mouse_genomes_project 10 98636722 98672333 + MGP_CASTEiJ_P0026297 Epyc protein_coding protein_coding MGP_CASTEiJ_T0026298.1 MGP_CASTEiJ_G0017007.1 mouse_genomes_project 10 98639744 98672885 + MGP_CASTEiJ_P0026298 Epyc protein_coding protein_coding MGP_CASTEiJ_T0026888.1 MGP_CASTEiJ_G0017200.1 mouse_genomes_project 10 131731526 131754776 - MGP_CASTEiJ_P0026888 Rab5b protein_coding protein_coding MGP_CASTEiJ_T0005999.1 MGP_CASTEiJ_G0005020.1 mouse_genomes_project 10 121324302 121336910 + 1700064J06Rik lincRNA lincRNA MGP_CASTEiJ_T0025251.1 MGP_CASTEiJ_G0016744.1 mouse_genomes_project 10 78033711 78090775 - MGP_CASTEiJ_P0025251 Trpm2 protein_coding protein_coding MGP_CASTEiJ_T0025252.1 MGP_CASTEiJ_G0016744.1 mouse_genomes_project 10 78035128 78088376 - Trpm2 protein_coding processed_transcript MGP_CASTEiJ_T0025253.1 MGP_CASTEiJ_G0016744.1 mouse_genomes_project 10 78035266 78057729 - Trpm2 protein_coding retained_intron MGP_CASTEiJ_T0025254.1 MGP_CASTEiJ_G0016744.1 mouse_genomes_project 10 78035324 78058783 - Trpm2 protein_coding retained_intron MGP_CASTEiJ_T0025255.1 MGP_CASTEiJ_G0016744.1 mouse_genomes_project 10 78041996 78046786 - Trpm2 protein_coding retained_intron MGP_CASTEiJ_T0025256.1 MGP_CASTEiJ_G0016744.1 mouse_genomes_project 10 78043236 78063819 - Trpm2 protein_coding retained_intron MGP_CASTEiJ_T0025257.1 MGP_CASTEiJ_G0016744.1 mouse_genomes_project 10 78083732 78090725 - MGP_CASTEiJ_P0025257 Trpm2 protein_coding protein_coding MGP_CASTEiJ_T0025258.1 MGP_CASTEiJ_G0016744.1 mouse_genomes_project 10 78087963 78091480 - Trpm2 protein_coding processed_transcript MGP_CASTEiJ_T0024243.1 MGP_CASTEiJ_G0016484.1 mouse_genomes_project 10 35574142 35579642 - MGP_CASTEiJ_P0024243 Marcks protein_coding protein_coding MGP_CASTEiJ_T0023868.1 MGP_CASTEiJ_G0016356.1 mouse_genomes_project 10 8495155 8514848 + MGP_CASTEiJ_P0023868 Fbxo30 protein_coding protein_coding MGP_CASTEiJ_T0023869.1 MGP_CASTEiJ_G0016356.1 mouse_genomes_project 10 8496041 8511491 + MGP_CASTEiJ_P0023869 Fbxo30 protein_coding protein_coding MGP_CASTEiJ_T0098808.1 MGP_CASTEiJ_G0035738.1 mouse_genomes_project 10 73303446 73332141 + Gm15397 sense_intronic sense_intronic MGP_CASTEiJ_T0100354.1 MGP_CASTEiJ_G0037267.1 mouse_genomes_project 10 19535770 19535879 - Gm23839 snoRNA snoRNA MGP_CASTEiJ_T0024684.1 MGP_CASTEiJ_G0016614.1 mouse_genomes_project 10 60440126 60559751 + MGP_CASTEiJ_P0024684 Lrrc20 protein_coding protein_coding MGP_CASTEiJ_T0025673.1 MGP_CASTEiJ_G0016856.1 mouse_genomes_project 10 81148582 81169938 + MGP_CASTEiJ_P0025673 Tmprss9 protein_coding protein_coding MGP_CASTEiJ_T0012107.1 MGP_CASTEiJ_G0010270.1 mouse_genomes_project 10 131736023 131744549 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024179.1 MGP_CASTEiJ_G0016452.1 mouse_genomes_project 10 27428879 27448629 - MGP_CASTEiJ_P0024179 Rnf146 protein_coding protein_coding MGP_CASTEiJ_T0024180.1 MGP_CASTEiJ_G0016452.1 mouse_genomes_project 10 27430938 27448629 - MGP_CASTEiJ_P0024180 Rnf146 protein_coding protein_coding MGP_CASTEiJ_T0024181.1 MGP_CASTEiJ_G0016452.1 mouse_genomes_project 10 27430943 27448227 - MGP_CASTEiJ_P0024181 Rnf146 protein_coding protein_coding MGP_CASTEiJ_T0024182.1 MGP_CASTEiJ_G0016452.1 mouse_genomes_project 10 27431426 27442389 - MGP_CASTEiJ_P0024182 Rnf146 protein_coding protein_coding MGP_CASTEiJ_T0000791.1 MGP_CASTEiJ_G0000731.1 mouse_genomes_project 10 111573241 111573533 - TEC TEC MGP_CASTEiJ_T0005958.1 MGP_CASTEiJ_G0004998.1 mouse_genomes_project 10 84747311 84753957 - Platr7 lincRNA lincRNA MGP_CASTEiJ_T0024743.1 MGP_CASTEiJ_G0016628.1 mouse_genomes_project 10 61447772 61488797 - MGP_CASTEiJ_P0024743 Hkdc1 protein_coding protein_coding MGP_CASTEiJ_T0024744.1 MGP_CASTEiJ_G0016628.1 mouse_genomes_project 10 61460784 61466011 - Hkdc1 protein_coding retained_intron MGP_CASTEiJ_T0024745.1 MGP_CASTEiJ_G0016628.1 mouse_genomes_project 10 61476141 61478166 - Hkdc1 protein_coding retained_intron MGP_CASTEiJ_T0024746.1 MGP_CASTEiJ_G0016628.1 mouse_genomes_project 10 61482743 61488714 - Hkdc1 protein_coding retained_intron MGP_CASTEiJ_T0099162.1 MGP_CASTEiJ_G0036075.1 mouse_genomes_project 10 28626475 28626577 + Gm22623 snRNA snRNA MGP_CASTEiJ_T0005944.1 MGP_CASTEiJ_G0004987.1 mouse_genomes_project 10 66187774 66197150 - 1110002J07Rik lincRNA lincRNA MGP_CASTEiJ_T0025108.1 MGP_CASTEiJ_G0016699.1 mouse_genomes_project 10 75742860 75745899 - MGP_CASTEiJ_P0025108 Gstt2 protein_coding protein_coding MGP_CASTEiJ_T0024709.1 MGP_CASTEiJ_G0016623.1 mouse_genomes_project 10 61129943 61133327 - MGP_CASTEiJ_P0024709 2010107G23Rik protein_coding protein_coding MGP_CASTEiJ_T0024710.1 MGP_CASTEiJ_G0016623.1 mouse_genomes_project 10 61130494 61133222 - MGP_CASTEiJ_P0024710 2010107G23Rik protein_coding protein_coding MGP_CASTEiJ_T0024711.1 MGP_CASTEiJ_G0016623.1 mouse_genomes_project 10 61130494 61133245 - MGP_CASTEiJ_P0024711 2010107G23Rik protein_coding protein_coding MGP_CASTEiJ_T0024712.1 MGP_CASTEiJ_G0016623.1 mouse_genomes_project 10 61130494 61133327 - MGP_CASTEiJ_P0024712 2010107G23Rik protein_coding protein_coding MGP_CASTEiJ_T0024713.1 MGP_CASTEiJ_G0016623.1 mouse_genomes_project 10 61130496 61133290 - MGP_CASTEiJ_P0024713 2010107G23Rik protein_coding protein_coding MGP_CASTEiJ_T0024714.1 MGP_CASTEiJ_G0016623.1 mouse_genomes_project 10 61131119 61169405 - MGP_CASTEiJ_P0024714 2010107G23Rik protein_coding protein_coding MGP_CASTEiJ_T0024715.1 MGP_CASTEiJ_G0016623.1 mouse_genomes_project 10 61131201 61164034 - MGP_CASTEiJ_P0024715 2010107G23Rik protein_coding protein_coding MGP_CASTEiJ_T0024716.1 MGP_CASTEiJ_G0016623.1 mouse_genomes_project 10 61131202 61174920 - MGP_CASTEiJ_P0024716 2010107G23Rik protein_coding protein_coding MGP_CASTEiJ_T0024717.1 MGP_CASTEiJ_G0016623.1 mouse_genomes_project 10 61131204 61132773 - MGP_CASTEiJ_P0024717 2010107G23Rik protein_coding protein_coding MGP_CASTEiJ_T0024718.1 MGP_CASTEiJ_G0016623.1 mouse_genomes_project 10 61132234 61174924 - MGP_CASTEiJ_P0024718 2010107G23Rik protein_coding protein_coding MGP_CASTEiJ_T0024720.1 MGP_CASTEiJ_G0016623.1 mouse_genomes_project 10 61163848 61174934 - 2010107G23Rik protein_coding processed_transcript MGP_CASTEiJ_T0025481.1 MGP_CASTEiJ_G0016812.1 mouse_genomes_project 10 80301952 80316613 + MGP_CASTEiJ_P0025481 Stk11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025482.1 MGP_CASTEiJ_G0016812.1 mouse_genomes_project 10 80301952 80316826 + MGP_CASTEiJ_P0025482 Stk11 protein_coding protein_coding MGP_CASTEiJ_T0025483.1 MGP_CASTEiJ_G0016812.1 mouse_genomes_project 10 80302496 80316614 + MGP_CASTEiJ_P0025483 Stk11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025484.1 MGP_CASTEiJ_G0016812.1 mouse_genomes_project 10 80302503 80303964 + Stk11 protein_coding processed_transcript MGP_CASTEiJ_T0025485.1 MGP_CASTEiJ_G0016812.1 mouse_genomes_project 10 80302766 80319155 + MGP_CASTEiJ_P0025485 Stk11 protein_coding protein_coding MGP_CASTEiJ_T0025486.1 MGP_CASTEiJ_G0016812.1 mouse_genomes_project 10 80310962 80316119 + Stk11 protein_coding retained_intron MGP_CASTEiJ_T0025487.1 MGP_CASTEiJ_G0016812.1 mouse_genomes_project 10 80311518 80312653 + Stk11 protein_coding retained_intron MGP_CASTEiJ_T0025488.1 MGP_CASTEiJ_G0016812.1 mouse_genomes_project 10 80312529 80314343 + Stk11 protein_coding retained_intron MGP_CASTEiJ_T0025489.1 MGP_CASTEiJ_G0016812.1 mouse_genomes_project 10 80312825 80316614 + MGP_CASTEiJ_P0025489 Stk11 protein_coding protein_coding MGP_CASTEiJ_T0005975.1 MGP_CASTEiJ_G0005005.1 mouse_genomes_project 10 92787264 92789834 + Gm26700 lincRNA lincRNA MGP_CASTEiJ_T0012102.1 MGP_CASTEiJ_G0010265.1 mouse_genomes_project 10 121129872 121130807 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100387.1 MGP_CASTEiJ_G0037300.1 mouse_genomes_project 10 96785766 96785899 + Gm24433 snoRNA snoRNA MGP_CASTEiJ_T0025148.1 MGP_CASTEiJ_G0016713.1 mouse_genomes_project 10 76427696 76441648 + MGP_CASTEiJ_P0025148 2610028H24Rik protein_coding protein_coding MGP_CASTEiJ_T0024067.1 MGP_CASTEiJ_G0016410.1 mouse_genomes_project 10 20434615 20467806 - MGP_CASTEiJ_P0024067 Tbpl1 protein_coding protein_coding MGP_CASTEiJ_T0024068.1 MGP_CASTEiJ_G0016410.1 mouse_genomes_project 10 20436116 20468297 - MGP_CASTEiJ_P0024068 Tbpl1 protein_coding protein_coding MGP_CASTEiJ_T0024069.1 MGP_CASTEiJ_G0016410.1 mouse_genomes_project 10 20436258 20437121 - Tbpl1 protein_coding processed_transcript MGP_CASTEiJ_T0024070.1 MGP_CASTEiJ_G0016410.1 mouse_genomes_project 10 20444042 20467720 - Tbpl1 protein_coding retained_intron MGP_CASTEiJ_T0026980.1 MGP_CASTEiJ_G0017263.1 mouse_genomes_project 10 133376629 133383961 - MGP_CASTEiJ_P0026980 Olfr825 protein_coding protein_coding MGP_CASTEiJ_T0025297.1 MGP_CASTEiJ_G0016751.1 mouse_genomes_project 10 78313952 78328196 - MGP_CASTEiJ_P0025297 Pwp2 protein_coding protein_coding MGP_CASTEiJ_T0026849.1 MGP_CASTEiJ_G0017187.1 mouse_genomes_project 10 131424567 131433438 - MGP_CASTEiJ_P0026849 Nabp2 protein_coding protein_coding MGP_CASTEiJ_T0026850.1 MGP_CASTEiJ_G0017187.1 mouse_genomes_project 10 131424567 131433584 - MGP_CASTEiJ_P0026850 Nabp2 protein_coding protein_coding MGP_CASTEiJ_T0026851.1 MGP_CASTEiJ_G0017187.1 mouse_genomes_project 10 131424646 131433432 - MGP_CASTEiJ_P0026851 Nabp2 protein_coding protein_coding MGP_CASTEiJ_T0026852.1 MGP_CASTEiJ_G0017187.1 mouse_genomes_project 10 131424762 131432553 - Nabp2 protein_coding retained_intron MGP_CASTEiJ_T0026853.1 MGP_CASTEiJ_G0017187.1 mouse_genomes_project 10 131425072 131433342 - MGP_CASTEiJ_P0026853 Nabp2 protein_coding protein_coding MGP_CASTEiJ_T0026854.1 MGP_CASTEiJ_G0017187.1 mouse_genomes_project 10 131425082 131436275 - MGP_CASTEiJ_P0026854 Nabp2 protein_coding protein_coding MGP_CASTEiJ_T0026855.1 MGP_CASTEiJ_G0017187.1 mouse_genomes_project 10 131431872 131432890 - MGP_CASTEiJ_P0026855 Nabp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026856.1 MGP_CASTEiJ_G0017187.1 mouse_genomes_project 10 131432428 131437213 - MGP_CASTEiJ_P0026856 Nabp2 protein_coding protein_coding MGP_CASTEiJ_T0026857.1 MGP_CASTEiJ_G0017187.1 mouse_genomes_project 10 131432456 131433446 - MGP_CASTEiJ_P0026857 Nabp2 protein_coding protein_coding MGP_CASTEiJ_T0026354.1 MGP_CASTEiJ_G0017027.1 mouse_genomes_project 10 104283484 104487106 - MGP_CASTEiJ_P0026354 Lrriq1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026355.1 MGP_CASTEiJ_G0017027.1 mouse_genomes_project 10 104305407 104490335 - MGP_CASTEiJ_P0026355 Lrriq1 protein_coding protein_coding MGP_CASTEiJ_T0026356.1 MGP_CASTEiJ_G0017027.1 mouse_genomes_project 10 104465516 104490335 - MGP_CASTEiJ_P0026356 Lrriq1 protein_coding protein_coding MGP_CASTEiJ_T0026357.1 MGP_CASTEiJ_G0017027.1 mouse_genomes_project 10 104466448 104490306 - MGP_CASTEiJ_P0026357 Lrriq1 protein_coding protein_coding MGP_CASTEiJ_T0005956.1 MGP_CASTEiJ_G0004997.1 mouse_genomes_project 10 84686753 84697578 + 4930463O16Rik lincRNA lincRNA MGP_CASTEiJ_T0005957.1 MGP_CASTEiJ_G0004997.1 mouse_genomes_project 10 84687194 84691197 + 4930463O16Rik lincRNA lincRNA MGP_CASTEiJ_T0100361.1 MGP_CASTEiJ_G0037274.1 mouse_genomes_project 10 33436373 33436559 + Gm26341 snoRNA snoRNA MGP_CASTEiJ_T0002925.1 MGP_CASTEiJ_G0002745.1 mouse_genomes_project 10 41421939 41422404 - Gm15200 antisense antisense MGP_CASTEiJ_T0023872.1 MGP_CASTEiJ_G0016358.1 mouse_genomes_project 10 9571491 9736051 - MGP_CASTEiJ_P0023872 Utrn protein_coding unknown_likely_coding MGP_CASTEiJ_T0023873.1 MGP_CASTEiJ_G0016358.1 mouse_genomes_project 10 9571905 10077640 - MGP_CASTEiJ_P0023873 Utrn protein_coding protein_coding MGP_CASTEiJ_T0099163.1 MGP_CASTEiJ_G0036076.1 mouse_genomes_project 10 29094896 29095003 - Gm24168 snRNA snRNA MGP_CASTEiJ_T0025974.1 MGP_CASTEiJ_G0016928.1 mouse_genomes_project 10 85328455 85333934 - MGP_CASTEiJ_P0025974 Fhl4 protein_coding protein_coding MGP_CASTEiJ_T0025441.1 MGP_CASTEiJ_G0016801.1 mouse_genomes_project 10 80084144 80089278 + MGP_CASTEiJ_P0025441 Kiss1r protein_coding protein_coding MGP_CASTEiJ_T0024083.1 MGP_CASTEiJ_G0016418.1 mouse_genomes_project 10 21676055 21679940 + MGP_CASTEiJ_P0024083 Taar2 protein_coding protein_coding MGP_CASTEiJ_T0010950.1 MGP_CASTEiJ_G0009138.1 mouse_genomes_project 10 92723880 92724083 - Gm27753 misc_RNA misc_RNA MGP_CASTEiJ_T0024087.1 MGP_CASTEiJ_G0016422.1 mouse_genomes_project 10 21727424 21728462 - MGP_CASTEiJ_P0024087 Taar6 protein_coding protein_coding MGP_CASTEiJ_T0099176.1 MGP_CASTEiJ_G0036089.1 mouse_genomes_project 10 53678376 53678438 - Gm25602 snRNA snRNA MGP_CASTEiJ_T0099151.1 MGP_CASTEiJ_G0036064.1 mouse_genomes_project 10 1112327 1112484 + Gm25515 snRNA snRNA MGP_CASTEiJ_T0025439.1 MGP_CASTEiJ_G0016799.1 mouse_genomes_project 10 80075333 80085582 - MGP_CASTEiJ_P0025439 R3hdm4 protein_coding protein_coding MGP_CASTEiJ_T0026947.1 MGP_CASTEiJ_G0017238.1 mouse_genomes_project 10 132609106 132610045 + MGP_CASTEiJ_P0026947 Olfr791 protein_coding protein_coding MGP_CASTEiJ_T0026500.1 MGP_CASTEiJ_G0017078.1 mouse_genomes_project 10 119133795 119147007 - MGP_CASTEiJ_P0026500 Cct2 protein_coding protein_coding MGP_CASTEiJ_T0025341.1 MGP_CASTEiJ_G0016775.1 mouse_genomes_project 10 79672388 79688951 - MGP_CASTEiJ_P0025341 Mier2 protein_coding protein_coding MGP_CASTEiJ_T0025342.1 MGP_CASTEiJ_G0016775.1 mouse_genomes_project 10 79672388 79689059 - MGP_CASTEiJ_P0025342 Mier2 protein_coding protein_coding MGP_CASTEiJ_T0025343.1 MGP_CASTEiJ_G0016775.1 mouse_genomes_project 10 79672389 79674102 - MGP_CASTEiJ_P0025343 Mier2 protein_coding protein_coding MGP_CASTEiJ_T0025344.1 MGP_CASTEiJ_G0016775.1 mouse_genomes_project 10 79673064 79674307 - Mier2 protein_coding retained_intron MGP_CASTEiJ_T0025345.1 MGP_CASTEiJ_G0016775.1 mouse_genomes_project 10 79673809 79676916 - Mier2 protein_coding retained_intron MGP_CASTEiJ_T0025346.1 MGP_CASTEiJ_G0016775.1 mouse_genomes_project 10 79674612 79676498 - Mier2 protein_coding processed_transcript MGP_CASTEiJ_T0025347.1 MGP_CASTEiJ_G0016775.1 mouse_genomes_project 10 79680948 79688974 - MGP_CASTEiJ_P0025347 Mier2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0025348.1 MGP_CASTEiJ_G0016775.1 mouse_genomes_project 10 79681020 79688744 - MGP_CASTEiJ_P0025348 Mier2 protein_coding protein_coding MGP_CASTEiJ_T0025349.1 MGP_CASTEiJ_G0016775.1 mouse_genomes_project 10 79681027 79688981 - MGP_CASTEiJ_P0025349 Mier2 protein_coding protein_coding MGP_CASTEiJ_T0025350.1 MGP_CASTEiJ_G0016775.1 mouse_genomes_project 10 79681052 79682957 - MGP_CASTEiJ_P0025350 Mier2 protein_coding protein_coding MGP_CASTEiJ_T0025351.1 MGP_CASTEiJ_G0016775.1 mouse_genomes_project 10 79681704 79688937 - MGP_CASTEiJ_P0025351 Mier2 protein_coding protein_coding MGP_CASTEiJ_T0025352.1 MGP_CASTEiJ_G0016775.1 mouse_genomes_project 10 79681782 79688465 - MGP_CASTEiJ_P0025352 Mier2 protein_coding protein_coding MGP_CASTEiJ_T0024837.1 MGP_CASTEiJ_G0016652.1 mouse_genomes_project 10 66293773 66392737 - MGP_CASTEiJ_P0024837 Reep3 protein_coding protein_coding MGP_CASTEiJ_T0025726.1 MGP_CASTEiJ_G0016870.1 mouse_genomes_project 10 81477697 81478949 - MGP_CASTEiJ_P0025726 4930442H23Rik protein_coding protein_coding MGP_CASTEiJ_T0024680.1 MGP_CASTEiJ_G0016610.1 mouse_genomes_project 10 60264390 60333000 - MGP_CASTEiJ_P0024680 Pald1 protein_coding protein_coding MGP_CASTEiJ_T0005934.1 MGP_CASTEiJ_G0004981.1 mouse_genomes_project 10 59956740 59961940 - Gm20610 lincRNA lincRNA MGP_CASTEiJ_T0009332.1 MGP_CASTEiJ_G0007520.1 mouse_genomes_project 10 40314991 40315046 + Mir3473b miRNA miRNA MGP_CASTEiJ_T0025196.1 MGP_CASTEiJ_G0016726.1 mouse_genomes_project 10 77305471 77312994 + MGP_CASTEiJ_P0025196 Pofut2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025197.1 MGP_CASTEiJ_G0016726.1 mouse_genomes_project 10 77305516 77315922 + MGP_CASTEiJ_P0025197 Pofut2 protein_coding protein_coding MGP_CASTEiJ_T0012082.1 MGP_CASTEiJ_G0010245.1 mouse_genomes_project 10 72996963 72998016 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0024523.1 MGP_CASTEiJ_G0016572.1 mouse_genomes_project 10 56554058 56570794 - MGP_CASTEiJ_P0024523 Serinc1 protein_coding protein_coding MGP_CASTEiJ_T0024524.1 MGP_CASTEiJ_G0016572.1 mouse_genomes_project 10 56561381 56570692 - MGP_CASTEiJ_P0024524 Serinc1 protein_coding protein_coding MGP_CASTEiJ_T0024525.1 MGP_CASTEiJ_G0016572.1 mouse_genomes_project 10 56561530 56570674 - MGP_CASTEiJ_P0024525 Serinc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0024526.1 MGP_CASTEiJ_G0016572.1 mouse_genomes_project 10 56563487 56570741 - Serinc1 protein_coding retained_intron MGP_CASTEiJ_T0024527.1 MGP_CASTEiJ_G0016572.1 mouse_genomes_project 10 56563493 56570673 - Serinc1 protein_coding retained_intron MGP_CASTEiJ_T0100349.1 MGP_CASTEiJ_G0037262.1 mouse_genomes_project 10 8842773 8842903 + Gm22546 snoRNA snoRNA MGP_CASTEiJ_T0026582.1 MGP_CASTEiJ_G0017098.1 mouse_genomes_project 10 122812718 122820607 - protein_coding retained_intron MGP_CASTEiJ_T0098449.1 MGP_CASTEiJ_G0035380.1 mouse_genomes_project 10 78459541 78459660 + n-R5s77 rRNA rRNA MGP_CASTEiJ_T0023687.1 MGP_CASTEiJ_G0016314.1 mouse_genomes_project 10 192709 237534 - MGP_CASTEiJ_P0023687 H60c protein_coding protein_coding MGP_CASTEiJ_T0098320.1 MGP_CASTEiJ_G0035251.1 mouse_genomes_project 10 118617969 118620195 + pseudogene pseudogene MGP_CASTEiJ_T0012089.1 MGP_CASTEiJ_G0010252.1 mouse_genomes_project 10 86379596 86379713 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005995.1 MGP_CASTEiJ_G0005019.1 mouse_genomes_project 10 119032124 119034852 + D630029K05Rik lincRNA lincRNA MGP_CASTEiJ_T0005996.1 MGP_CASTEiJ_G0005019.1 mouse_genomes_project 10 119032157 119035061 + D630029K05Rik lincRNA lincRNA MGP_CASTEiJ_T0005997.1 MGP_CASTEiJ_G0005019.1 mouse_genomes_project 10 119033200 119035191 + D630029K05Rik lincRNA lincRNA MGP_CASTEiJ_T0005998.1 MGP_CASTEiJ_G0005019.1 mouse_genomes_project 10 119033731 119036595 + D630029K05Rik lincRNA lincRNA MGP_CASTEiJ_T0002904.1 MGP_CASTEiJ_G0002730.1 mouse_genomes_project 10 4901798 4902885 + B430219N15Rik antisense antisense MGP_CASTEiJ_T0002905.1 MGP_CASTEiJ_G0002730.1 mouse_genomes_project 10 4901863 4902956 + B430219N15Rik antisense antisense MGP_CASTEiJ_T0026193.1 MGP_CASTEiJ_G0016977.1 mouse_genomes_project 10 93443956 93708301 - MGP_CASTEiJ_P0026193 Cfap54 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026194.1 MGP_CASTEiJ_G0016977.1 mouse_genomes_project 10 93443956 93746051 - MGP_CASTEiJ_P0026194 Cfap54 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026195.1 MGP_CASTEiJ_G0016977.1 mouse_genomes_project 10 93443964 93746073 - MGP_CASTEiJ_P0026195 Cfap54 protein_coding protein_coding MGP_CASTEiJ_T0026196.1 MGP_CASTEiJ_G0016977.1 mouse_genomes_project 10 93466004 93499567 - MGP_CASTEiJ_P0026196 Cfap54 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026197.1 MGP_CASTEiJ_G0016977.1 mouse_genomes_project 10 93561407 93599557 - Cfap54 protein_coding processed_transcript MGP_CASTEiJ_T0026198.1 MGP_CASTEiJ_G0016977.1 mouse_genomes_project 10 93561409 93746083 - MGP_CASTEiJ_P0026198 Cfap54 protein_coding unknown_likely_coding MGP_CASTEiJ_T0026199.1 MGP_CASTEiJ_G0016977.1 mouse_genomes_project 10 93576187 93599565 - MGP_CASTEiJ_P0026199 Cfap54 protein_coding protein_coding MGP_CASTEiJ_T0026200.1 MGP_CASTEiJ_G0016977.1 mouse_genomes_project 10 93637422 93703847 - MGP_CASTEiJ_P0026200 Cfap54 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026201.1 MGP_CASTEiJ_G0016977.1 mouse_genomes_project 10 93689517 93692896 - Cfap54 protein_coding processed_transcript MGP_CASTEiJ_T0026202.1 MGP_CASTEiJ_G0016977.1 mouse_genomes_project 10 93697592 93746073 - MGP_CASTEiJ_P0026202 Cfap54 protein_coding protein_coding MGP_CASTEiJ_T0026203.1 MGP_CASTEiJ_G0016977.1 mouse_genomes_project 10 93704444 93746051 - MGP_CASTEiJ_P0026203 Cfap54 protein_coding protein_coding MGP_CASTEiJ_T0026204.1 MGP_CASTEiJ_G0016977.1 mouse_genomes_project 10 93724914 93746073 - Cfap54 protein_coding retained_intron MGP_CASTEiJ_T0026205.1 MGP_CASTEiJ_G0016977.1 mouse_genomes_project 10 93730529 93734025 - Cfap54 protein_coding processed_transcript MGP_CASTEiJ_T0024708.1 MGP_CASTEiJ_G0016622.1 mouse_genomes_project 10 61090082 61093158 + MGP_CASTEiJ_P0024708 Gm5424 protein_coding protein_coding MGP_CASTEiJ_T0024388.1 MGP_CASTEiJ_G0016524.1 mouse_genomes_project 10 41204410 41240225 + MGP_CASTEiJ_P0024388 Snx3 protein_coding protein_coding MGP_CASTEiJ_T0024389.1 MGP_CASTEiJ_G0016524.1 mouse_genomes_project 10 41204411 41240808 + MGP_CASTEiJ_P0024389 Snx3 protein_coding protein_coding MGP_CASTEiJ_T0024390.1 MGP_CASTEiJ_G0016524.1 mouse_genomes_project 10 41204627 41246180 + MGP_CASTEiJ_P0024390 Snx3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0024391.1 MGP_CASTEiJ_G0016524.1 mouse_genomes_project 10 41204670 41240819 + MGP_CASTEiJ_P0024391 Snx3 protein_coding protein_coding MGP_CASTEiJ_T0025295.1 MGP_CASTEiJ_G0016749.1 mouse_genomes_project 10 78200837 78210988 + MGP_CASTEiJ_P0025295 Icosl protein_coding protein_coding MGP_CASTEiJ_T0002945.1 MGP_CASTEiJ_G0002762.1 mouse_genomes_project 10 76259553 76261269 + Gm16240 antisense antisense MGP_CASTEiJ_T0025928.1 MGP_CASTEiJ_G0016916.1 mouse_genomes_project 10 83442802 83548963 - MGP_CASTEiJ_P0025928 protein_coding unknown_likely_coding MGP_CASTEiJ_T0025929.1 MGP_CASTEiJ_G0016916.1 mouse_genomes_project 10 83518753 83522096 - protein_coding processed_transcript MGP_CASTEiJ_T0025930.1 MGP_CASTEiJ_G0016916.1 mouse_genomes_project 10 83534475 83545068 - MGP_CASTEiJ_P0025930 protein_coding protein_coding MGP_CASTEiJ_T0025931.1 MGP_CASTEiJ_G0016916.1 mouse_genomes_project 10 83534602 83560822 - MGP_CASTEiJ_P0025931 protein_coding protein_coding MGP_CASTEiJ_T0025932.1 MGP_CASTEiJ_G0016916.1 mouse_genomes_project 10 83534832 83557669 - MGP_CASTEiJ_P0025932 protein_coding protein_coding MGP_CASTEiJ_T0024134.1 MGP_CASTEiJ_G0016439.1 mouse_genomes_project 10 23879835 23892808 - MGP_CASTEiJ_P0024134 Tmem200a protein_coding unknown_likely_coding MGP_CASTEiJ_T0024135.1 MGP_CASTEiJ_G0016439.1 mouse_genomes_project 10 23887368 23982656 - MGP_CASTEiJ_P0024135 Tmem200a protein_coding protein_coding MGP_CASTEiJ_T0016363.1 MGP_CASTEiJ_G0014443.1 mouse_genomes_project 10 1455956 1472932 + Gm16153 processed_transcript processed_transcript MGP_CASTEiJ_T0026520.1 MGP_CASTEiJ_G0017085.1 mouse_genomes_project 10 119841315 119865319 - MGP_CASTEiJ_P0026520 Mdm2 protein_coding protein_coding MGP_CASTEiJ_T0026521.1 MGP_CASTEiJ_G0017085.1 mouse_genomes_project 10 119841315 119865319 - MGP_CASTEiJ_P0026521 Mdm2 protein_coding protein_coding MGP_CASTEiJ_T0026522.1 MGP_CASTEiJ_G0017085.1 mouse_genomes_project 10 119841322 119864583 - MGP_CASTEiJ_P0026522 Mdm2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0026523.1 MGP_CASTEiJ_G0017085.1 mouse_genomes_project 10 119842544 119865246 - Mdm2 protein_coding retained_intron MGP_CASTEiJ_T0026524.1 MGP_CASTEiJ_G0017085.1 mouse_genomes_project 10 119842678 119843956 - Mdm2 protein_coding retained_intron MGP_CASTEiJ_T0026525.1 MGP_CASTEiJ_G0017085.1 mouse_genomes_project 10 119849504 119864639 - Mdm2 protein_coding processed_transcript MGP_CASTEiJ_T0026526.1 MGP_CASTEiJ_G0017085.1 mouse_genomes_project 10 119850611 119865272 - Mdm2 protein_coding processed_transcript MGP_CASTEiJ_T0026527.1 MGP_CASTEiJ_G0017085.1 mouse_genomes_project 10 119856828 119864853 - Mdm2 protein_coding processed_transcript MGP_CASTEiJ_T0026528.1 MGP_CASTEiJ_G0017085.1 mouse_genomes_project 10 119864278 119865275 - Mdm2 protein_coding retained_intron MGP_CASTEiJ_T0026887.1 MGP_CASTEiJ_G0017199.1 mouse_genomes_project 10 131724219 131728250 - MGP_CASTEiJ_P0026887 Suox protein_coding protein_coding MGP_CASTEiJ_T0088968.1 MGP_CASTEiJ_G0032619.1 mouse_genomes_project 8 46836537 46879669 + MGP_CASTEiJ_P0088968 Dctd protein_coding protein_coding MGP_CASTEiJ_T0088969.1 MGP_CASTEiJ_G0032619.1 mouse_genomes_project 8 46847488 46880721 + MGP_CASTEiJ_P0088969 Dctd protein_coding protein_coding MGP_CASTEiJ_T0088970.1 MGP_CASTEiJ_G0032619.1 mouse_genomes_project 8 46847543 46880719 + MGP_CASTEiJ_P0088970 Dctd protein_coding protein_coding MGP_CASTEiJ_T0088971.1 MGP_CASTEiJ_G0032619.1 mouse_genomes_project 8 46847692 46880719 + MGP_CASTEiJ_P0088971 Dctd protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088972.1 MGP_CASTEiJ_G0032619.1 mouse_genomes_project 8 46847695 46876748 + Dctd protein_coding retained_intron MGP_CASTEiJ_T0088973.1 MGP_CASTEiJ_G0032619.1 mouse_genomes_project 8 46847719 46877655 + Dctd protein_coding processed_transcript MGP_CASTEiJ_T0088974.1 MGP_CASTEiJ_G0032619.1 mouse_genomes_project 8 46847741 46892472 + MGP_CASTEiJ_P0088974 Dctd protein_coding protein_coding MGP_CASTEiJ_T0090172.1 MGP_CASTEiJ_G0032983.1 mouse_genomes_project 8 95178939 95214054 - MGP_CASTEiJ_P0090172 Pllp protein_coding protein_coding MGP_CASTEiJ_T0010704.1 MGP_CASTEiJ_G0008892.1 mouse_genomes_project 8 112683751 112683828 - Gm24103 miRNA miRNA MGP_CASTEiJ_T0088462.1 MGP_CASTEiJ_G0032460.1 mouse_genomes_project 8 19513603 19567019 - MGP_CASTEiJ_P0088462 Nek5 protein_coding protein_coding MGP_CASTEiJ_T0015394.1 MGP_CASTEiJ_G0013557.1 mouse_genomes_project 8 84884415 84884799 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101291.1 MGP_CASTEiJ_G0038204.1 mouse_genomes_project 8 15662686 15662796 - Gm25665 snoRNA snoRNA MGP_CASTEiJ_T0091170.1 MGP_CASTEiJ_G0033306.1 mouse_genomes_project 8 129422355 129428003 - MGP_CASTEiJ_P0091170 Irf2bp2 protein_coding protein_coding MGP_CASTEiJ_T0015393.1 MGP_CASTEiJ_G0013556.1 mouse_genomes_project 8 83279347 83279825 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008871.1 MGP_CASTEiJ_G0007151.1 mouse_genomes_project 8 60348185 60355538 - 1700001D01Rik lincRNA lincRNA MGP_CASTEiJ_T0090944.1 MGP_CASTEiJ_G0033237.1 mouse_genomes_project 8 125053791 125065473 - MGP_CASTEiJ_P0090944 Mvd protein_coding protein_coding MGP_CASTEiJ_T0088312.1 MGP_CASTEiJ_G0032391.1 mouse_genomes_project 8 10419346 10452868 - MGP_CASTEiJ_P0088312 protein_coding protein_coding MGP_CASTEiJ_T0088313.1 MGP_CASTEiJ_G0032391.1 mouse_genomes_project 8 10434949 10452868 - MGP_CASTEiJ_P0088313 protein_coding protein_coding MGP_CASTEiJ_T0088314.1 MGP_CASTEiJ_G0032391.1 mouse_genomes_project 8 10441123 10441946 - protein_coding retained_intron MGP_CASTEiJ_T0088315.1 MGP_CASTEiJ_G0032391.1 mouse_genomes_project 8 10441371 10452777 - MGP_CASTEiJ_P0088315 protein_coding protein_coding MGP_CASTEiJ_T0088316.1 MGP_CASTEiJ_G0032391.1 mouse_genomes_project 8 10441503 10452802 - MGP_CASTEiJ_P0088316 protein_coding protein_coding MGP_CASTEiJ_T0088916.1 MGP_CASTEiJ_G0032600.1 mouse_genomes_project 8 44802717 44807031 - MGP_CASTEiJ_P0088916 protein_coding protein_coding MGP_CASTEiJ_T0089551.1 MGP_CASTEiJ_G0032784.1 mouse_genomes_project 8 71641958 71643135 - MGP_CASTEiJ_P0089551 Olfr373 protein_coding protein_coding MGP_CASTEiJ_T0091166.1 MGP_CASTEiJ_G0033302.1 mouse_genomes_project 8 128779779 128814795 + MGP_CASTEiJ_P0091166 Kcnk1 protein_coding protein_coding MGP_CASTEiJ_T0005254.1 MGP_CASTEiJ_G0004463.1 mouse_genomes_project 8 119177300 119184387 + Gm15395 antisense antisense MGP_CASTEiJ_T0099015.1 MGP_CASTEiJ_G0035934.1 mouse_genomes_project 8 31857886 31858864 - Gm26978 sense_intronic sense_intronic MGP_CASTEiJ_T0008950.1 MGP_CASTEiJ_G0007206.1 mouse_genomes_project 8 123061936 123066087 + Gm10614 lincRNA lincRNA MGP_CASTEiJ_T0090672.1 MGP_CASTEiJ_G0033159.1 mouse_genomes_project 8 113602653 113615912 - MGP_CASTEiJ_P0090672 Tmem170 protein_coding protein_coding MGP_CASTEiJ_T0089140.1 MGP_CASTEiJ_G0032665.1 mouse_genomes_project 8 65767985 65770005 + MGP_CASTEiJ_P0089140 Tktl2 protein_coding protein_coding MGP_CASTEiJ_T0089141.1 MGP_CASTEiJ_G0032665.1 mouse_genomes_project 8 65767988 65774568 + MGP_CASTEiJ_P0089141 Tktl2 protein_coding protein_coding MGP_CASTEiJ_T0015362.1 MGP_CASTEiJ_G0013525.1 mouse_genomes_project 8 33193930 33194463 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088338.1 MGP_CASTEiJ_G0032400.1 mouse_genomes_project 8 10787261 10805960 - Rasa3 protein_coding retained_intron MGP_CASTEiJ_T0088339.1 MGP_CASTEiJ_G0032400.1 mouse_genomes_project 8 10787261 10911604 - MGP_CASTEiJ_P0088339 Rasa3 protein_coding protein_coding MGP_CASTEiJ_T0088340.1 MGP_CASTEiJ_G0032400.1 mouse_genomes_project 8 10797684 10798247 - Rasa3 protein_coding retained_intron MGP_CASTEiJ_T0088341.1 MGP_CASTEiJ_G0032400.1 mouse_genomes_project 8 10817704 10827871 - Rasa3 protein_coding retained_intron MGP_CASTEiJ_T0088342.1 MGP_CASTEiJ_G0032400.1 mouse_genomes_project 8 10817705 10911452 - MGP_CASTEiJ_P0088342 Rasa3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088343.1 MGP_CASTEiJ_G0032400.1 mouse_genomes_project 8 10819975 10911484 - Rasa3 protein_coding retained_intron MGP_CASTEiJ_T0101297.1 MGP_CASTEiJ_G0038210.1 mouse_genomes_project 8 23218813 23218944 - Gm23184 snoRNA snoRNA MGP_CASTEiJ_T0089360.1 MGP_CASTEiJ_G0032725.1 mouse_genomes_project 8 69987064 69995589 + MGP_CASTEiJ_P0089360 Fkbp8 protein_coding protein_coding MGP_CASTEiJ_T0089361.1 MGP_CASTEiJ_G0032725.1 mouse_genomes_project 8 69987087 69995587 + MGP_CASTEiJ_P0089361 Fkbp8 protein_coding protein_coding MGP_CASTEiJ_T0089362.1 MGP_CASTEiJ_G0032725.1 mouse_genomes_project 8 69987102 69992855 + Fkbp8 protein_coding retained_intron MGP_CASTEiJ_T0089363.1 MGP_CASTEiJ_G0032725.1 mouse_genomes_project 8 69987533 69995588 + MGP_CASTEiJ_P0089363 Fkbp8 protein_coding protein_coding MGP_CASTEiJ_T0089364.1 MGP_CASTEiJ_G0032725.1 mouse_genomes_project 8 69987696 69991012 + Fkbp8 protein_coding retained_intron MGP_CASTEiJ_T0089365.1 MGP_CASTEiJ_G0032725.1 mouse_genomes_project 8 69991533 69994432 + Fkbp8 protein_coding retained_intron MGP_CASTEiJ_T0089366.1 MGP_CASTEiJ_G0032725.1 mouse_genomes_project 8 69992143 69995217 + Fkbp8 protein_coding retained_intron MGP_CASTEiJ_T0089367.1 MGP_CASTEiJ_G0032725.1 mouse_genomes_project 8 69992530 69995232 + Fkbp8 protein_coding retained_intron MGP_CASTEiJ_T0089368.1 MGP_CASTEiJ_G0032725.1 mouse_genomes_project 8 69992585 69995128 + Fkbp8 protein_coding retained_intron MGP_CASTEiJ_T0089369.1 MGP_CASTEiJ_G0032725.1 mouse_genomes_project 8 69994377 69995318 + MGP_CASTEiJ_P0089369 Fkbp8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089253.1 MGP_CASTEiJ_G0032703.1 mouse_genomes_project 8 69527516 69558495 - MGP_CASTEiJ_P0089253 Ncan protein_coding protein_coding MGP_CASTEiJ_T0088080.1 MGP_CASTEiJ_G0032326.1 mouse_genomes_project 8 459366 488216 + MGP_CASTEiJ_P0088080 Pnpla6 protein_coding protein_coding MGP_CASTEiJ_T0088081.1 MGP_CASTEiJ_G0032326.1 mouse_genomes_project 8 459366 488216 + MGP_CASTEiJ_P0088081 Pnpla6 protein_coding protein_coding MGP_CASTEiJ_T0005217.1 MGP_CASTEiJ_G0004431.1 mouse_genomes_project 8 53744516 53780082 - 5330439A09Rik antisense antisense MGP_CASTEiJ_T0005182.1 MGP_CASTEiJ_G0004404.1 mouse_genomes_project 8 179211 180150 + Gm16180 antisense antisense MGP_CASTEiJ_T0089047.1 MGP_CASTEiJ_G0032643.1 mouse_genomes_project 8 59684501 59725707 + MGP_CASTEiJ_P0089047 Mfap3l protein_coding protein_coding MGP_CASTEiJ_T0089048.1 MGP_CASTEiJ_G0032643.1 mouse_genomes_project 8 59684534 59727496 + MGP_CASTEiJ_P0089048 Mfap3l protein_coding protein_coding MGP_CASTEiJ_T0089049.1 MGP_CASTEiJ_G0032643.1 mouse_genomes_project 8 59705885 59723271 + MGP_CASTEiJ_P0089049 Mfap3l protein_coding protein_coding MGP_CASTEiJ_T0089050.1 MGP_CASTEiJ_G0032643.1 mouse_genomes_project 8 59706321 59723167 + MGP_CASTEiJ_P0089050 Mfap3l protein_coding protein_coding MGP_CASTEiJ_T0089763.1 MGP_CASTEiJ_G0032863.1 mouse_genomes_project 8 83986049 83987986 - MGP_CASTEiJ_P0089763 2210011C24Rik protein_coding protein_coding MGP_CASTEiJ_T0089764.1 MGP_CASTEiJ_G0032863.1 mouse_genomes_project 8 83986066 83987239 - MGP_CASTEiJ_P0089764 2210011C24Rik protein_coding protein_coding MGP_CASTEiJ_T0089765.1 MGP_CASTEiJ_G0032863.1 mouse_genomes_project 8 83986594 83987239 - MGP_CASTEiJ_P0089765 2210011C24Rik protein_coding protein_coding MGP_CASTEiJ_T0089766.1 MGP_CASTEiJ_G0032863.1 mouse_genomes_project 8 83987271 83987999 - MGP_CASTEiJ_P0089766 2210011C24Rik protein_coding protein_coding MGP_CASTEiJ_T0089767.1 MGP_CASTEiJ_G0032863.1 mouse_genomes_project 8 83987279 83987984 - MGP_CASTEiJ_P0089767 2210011C24Rik protein_coding protein_coding MGP_CASTEiJ_T0100058.1 MGP_CASTEiJ_G0036971.1 mouse_genomes_project 8 25538070 25538173 - Gm24202 snRNA snRNA MGP_CASTEiJ_T0090429.1 MGP_CASTEiJ_G0033082.1 mouse_genomes_project 8 107205365 107231729 - MGP_CASTEiJ_P0090429 Slc12a4 protein_coding protein_coding MGP_CASTEiJ_T0090430.1 MGP_CASTEiJ_G0033082.1 mouse_genomes_project 8 107205365 107231658 - MGP_CASTEiJ_P0090430 Slc12a4 protein_coding protein_coding MGP_CASTEiJ_T0090431.1 MGP_CASTEiJ_G0033082.1 mouse_genomes_project 8 107208478 107209961 - Slc12a4 protein_coding retained_intron MGP_CASTEiJ_T0090432.1 MGP_CASTEiJ_G0033082.1 mouse_genomes_project 8 107217940 107230034 - MGP_CASTEiJ_P0090432 Slc12a4 protein_coding protein_coding MGP_CASTEiJ_T0090433.1 MGP_CASTEiJ_G0033082.1 mouse_genomes_project 8 107226054 107231688 - Slc12a4 protein_coding retained_intron MGP_CASTEiJ_T0008872.1 MGP_CASTEiJ_G0007152.1 mouse_genomes_project 8 64346084 64395614 - lincRNA lincRNA MGP_CASTEiJ_T0002255.1 MGP_CASTEiJ_G0002174.1 mouse_genomes_project 8 10488764 10490881 - TEC TEC MGP_CASTEiJ_T0015369.1 MGP_CASTEiJ_G0013532.1 mouse_genomes_project 8 57735645 57736587 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088428.1 MGP_CASTEiJ_G0032432.1 mouse_genomes_project 8 16618083 16620532 + MGP_CASTEiJ_P0088428 Defb4 protein_coding protein_coding MGP_CASTEiJ_T0090735.1 MGP_CASTEiJ_G0033184.1 mouse_genomes_project 8 119318090 119368175 + MGP_CASTEiJ_P0090735 Gan protein_coding unknown_likely_coding MGP_CASTEiJ_T0090736.1 MGP_CASTEiJ_G0033184.1 mouse_genomes_project 8 119318134 119366661 + MGP_CASTEiJ_P0090736 Gan protein_coding protein_coding MGP_CASTEiJ_T0100056.1 MGP_CASTEiJ_G0036969.1 mouse_genomes_project 8 22484020 22484123 + Gm23898 snRNA snRNA MGP_CASTEiJ_T0101303.1 MGP_CASTEiJ_G0038216.1 mouse_genomes_project 8 40944561 40944625 - Gm23531 snoRNA snoRNA MGP_CASTEiJ_T0090236.1 MGP_CASTEiJ_G0033005.1 mouse_genomes_project 8 96075063 96101511 + MGP_CASTEiJ_P0090236 Ccdc113 protein_coding protein_coding MGP_CASTEiJ_T0002260.1 MGP_CASTEiJ_G0002179.1 mouse_genomes_project 8 84197202 84199373 + TEC TEC MGP_CASTEiJ_T0099021.1 MGP_CASTEiJ_G0035940.1 mouse_genomes_project 8 125702893 125705209 + 2810013P06Rik sense_intronic sense_intronic MGP_CASTEiJ_T0088764.1 MGP_CASTEiJ_G0032562.1 mouse_genomes_project 8 35285237 35311720 + MGP_CASTEiJ_P0088764 protein_coding protein_coding MGP_CASTEiJ_T0015372.1 MGP_CASTEiJ_G0013535.1 mouse_genomes_project 8 65053508 65053793 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090039.1 MGP_CASTEiJ_G0032938.1 mouse_genomes_project 8 88774831 88784032 - MGP_CASTEiJ_P0090039 Snx20 protein_coding protein_coding MGP_CASTEiJ_T0090336.1 MGP_CASTEiJ_G0033042.1 mouse_genomes_project 8 106458390 106460906 - MGP_CASTEiJ_P0090336 B3gnt9 protein_coding protein_coding MGP_CASTEiJ_T0090337.1 MGP_CASTEiJ_G0033042.1 mouse_genomes_project 8 106458391 106460904 - MGP_CASTEiJ_P0090337 B3gnt9 protein_coding protein_coding MGP_CASTEiJ_T0090338.1 MGP_CASTEiJ_G0033042.1 mouse_genomes_project 8 106460074 106460904 - MGP_CASTEiJ_P0090338 B3gnt9 protein_coding protein_coding MGP_CASTEiJ_T0089974.1 MGP_CASTEiJ_G0032919.1 mouse_genomes_project 8 85587397 85607079 - MGP_CASTEiJ_P0089974 Dnaja2 protein_coding protein_coding MGP_CASTEiJ_T0089370.1 MGP_CASTEiJ_G0032726.1 mouse_genomes_project 8 69999929 70064643 + MGP_CASTEiJ_P0089370 Ell protein_coding protein_coding MGP_CASTEiJ_T0101312.1 MGP_CASTEiJ_G0038225.1 mouse_genomes_project 8 59864558 59864666 - Gm23329 snoRNA snoRNA MGP_CASTEiJ_T0008877.1 MGP_CASTEiJ_G0007156.1 mouse_genomes_project 8 70499569 70520276 - lincRNA lincRNA MGP_CASTEiJ_T0088426.1 MGP_CASTEiJ_G0032430.1 mouse_genomes_project 8 16586606 16588295 + MGP_CASTEiJ_P0088426 Spag11a protein_coding protein_coding MGP_CASTEiJ_T0090470.1 MGP_CASTEiJ_G0033096.1 mouse_genomes_project 8 107790915 107845918 + MGP_CASTEiJ_P0090470 Cdh3 protein_coding protein_coding MGP_CASTEiJ_T0010660.1 MGP_CASTEiJ_G0008848.1 mouse_genomes_project 8 70278753 70278811 + Mir7240 miRNA miRNA MGP_CASTEiJ_T0090423.1 MGP_CASTEiJ_G0033077.1 mouse_genomes_project 8 107149981 107151438 + MGP_CASTEiJ_P0090423 Nrn1l protein_coding protein_coding MGP_CASTEiJ_T0090424.1 MGP_CASTEiJ_G0033077.1 mouse_genomes_project 8 107149986 107151432 + MGP_CASTEiJ_P0090424 Nrn1l protein_coding protein_coding MGP_CASTEiJ_T0088704.1 MGP_CASTEiJ_G0032543.1 mouse_genomes_project 8 31703077 31708756 - MGP_CASTEiJ_P0088704 Smim18 protein_coding protein_coding MGP_CASTEiJ_T0089456.1 MGP_CASTEiJ_G0032760.1 mouse_genomes_project 8 71008811 71009638 + MGP_CASTEiJ_P0089456 Mrpl34 protein_coding protein_coding MGP_CASTEiJ_T0088477.1 MGP_CASTEiJ_G0032468.1 mouse_genomes_project 8 19916494 19930879 - MGP_CASTEiJ_P0088477 Smim19 protein_coding protein_coding MGP_CASTEiJ_T0088478.1 MGP_CASTEiJ_G0032468.1 mouse_genomes_project 8 19916494 19930879 - MGP_CASTEiJ_P0088478 Smim19 protein_coding protein_coding MGP_CASTEiJ_T0088449.1 MGP_CASTEiJ_G0032452.1 mouse_genomes_project 8 19337575 19338524 - MGP_CASTEiJ_P0088449 Defb11 protein_coding protein_coding MGP_CASTEiJ_T0101342.1 MGP_CASTEiJ_G0038255.1 mouse_genomes_project 8 115371605 115371736 - Gm25766 snoRNA snoRNA MGP_CASTEiJ_T0088310.1 MGP_CASTEiJ_G0032389.1 mouse_genomes_project 8 10344273 10360493 + MGP_CASTEiJ_P0088310 Lamp1 protein_coding protein_coding MGP_CASTEiJ_T0010692.1 MGP_CASTEiJ_G0008880.1 mouse_genomes_project 8 103736321 103736416 - Gm26301 miRNA miRNA MGP_CASTEiJ_T0089549.1 MGP_CASTEiJ_G0032782.1 mouse_genomes_project 8 71616181 71626284 - MGP_CASTEiJ_P0089549 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0010642.1 MGP_CASTEiJ_G0008830.1 mouse_genomes_project 8 13486497 13486579 - Mir3106 miRNA miRNA MGP_CASTEiJ_T0088963.1 MGP_CASTEiJ_G0032614.1 mouse_genomes_project 8 46384497 46389091 - MGP_CASTEiJ_P0088963 Cdkn2aip protein_coding protein_coding MGP_CASTEiJ_T0088435.1 MGP_CASTEiJ_G0032439.1 mouse_genomes_project 8 18331240 18333079 - MGP_CASTEiJ_P0088435 Gm15056 protein_coding protein_coding MGP_CASTEiJ_T0088436.1 MGP_CASTEiJ_G0032439.1 mouse_genomes_project 8 18331240 18332685 - MGP_CASTEiJ_P0088436 Gm15056 protein_coding protein_coding MGP_CASTEiJ_T0010679.1 MGP_CASTEiJ_G0008867.1 mouse_genomes_project 8 84204927 84205010 - Mir3074-2 miRNA miRNA MGP_CASTEiJ_T0015392.1 MGP_CASTEiJ_G0013555.1 mouse_genomes_project 8 82503491 82504449 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090003.1 MGP_CASTEiJ_G0032928.1 mouse_genomes_project 8 86903598 86948594 - MGP_CASTEiJ_P0090003 N4bp1 protein_coding protein_coding MGP_CASTEiJ_T0010659.1 MGP_CASTEiJ_G0008847.1 mouse_genomes_project 8 69537708 69537771 - Mir7066 miRNA miRNA MGP_CASTEiJ_T0090589.1 MGP_CASTEiJ_G0033139.1 mouse_genomes_project 8 112426153 112462417 - MGP_CASTEiJ_P0090589 Sf3b3 protein_coding protein_coding MGP_CASTEiJ_T0089373.1 MGP_CASTEiJ_G0032729.1 mouse_genomes_project 8 70088574 70092566 + MGP_CASTEiJ_P0089373 Lrrc25 protein_coding protein_coding MGP_CASTEiJ_T0088658.1 MGP_CASTEiJ_G0032521.1 mouse_genomes_project 8 24972351 24976168 - MGP_CASTEiJ_P0088658 Adrb3 protein_coding protein_coding MGP_CASTEiJ_T0088659.1 MGP_CASTEiJ_G0032521.1 mouse_genomes_project 8 24972579 24975163 - MGP_CASTEiJ_P0088659 Adrb3 protein_coding protein_coding MGP_CASTEiJ_T0088660.1 MGP_CASTEiJ_G0032521.1 mouse_genomes_project 8 24973380 24975074 - MGP_CASTEiJ_P0088660 Adrb3 protein_coding protein_coding MGP_CASTEiJ_T0010697.1 MGP_CASTEiJ_G0008885.1 mouse_genomes_project 8 107215696 107215759 - Mir7074 miRNA miRNA MGP_CASTEiJ_T0090405.1 MGP_CASTEiJ_G0033069.1 mouse_genomes_project 8 106936144 106938111 + MGP_CASTEiJ_P0090405 4933405L10Rik protein_coding protein_coding MGP_CASTEiJ_T0089658.1 MGP_CASTEiJ_G0032828.1 mouse_genomes_project 8 79071937 79137370 - MGP_CASTEiJ_P0089658 Smad1 protein_coding protein_coding MGP_CASTEiJ_T0089659.1 MGP_CASTEiJ_G0032828.1 mouse_genomes_project 8 79075175 79137370 - MGP_CASTEiJ_P0089659 Smad1 protein_coding protein_coding MGP_CASTEiJ_T0089660.1 MGP_CASTEiJ_G0032828.1 mouse_genomes_project 8 79089219 79137370 - MGP_CASTEiJ_P0089660 Smad1 protein_coding protein_coding MGP_CASTEiJ_T0088552.1 MGP_CASTEiJ_G0032490.1 mouse_genomes_project 8 22275418 22348022 - MGP_CASTEiJ_P0088552 Adam5 protein_coding protein_coding MGP_CASTEiJ_T0088553.1 MGP_CASTEiJ_G0032490.1 mouse_genomes_project 8 22275418 22357127 - MGP_CASTEiJ_P0088553 Adam5 protein_coding protein_coding MGP_CASTEiJ_T0088554.1 MGP_CASTEiJ_G0032490.1 mouse_genomes_project 8 22275527 22357053 - Adam5 protein_coding processed_transcript MGP_CASTEiJ_T0088555.1 MGP_CASTEiJ_G0032490.1 mouse_genomes_project 8 22281291 22357437 - MGP_CASTEiJ_P0088555 Adam5 protein_coding protein_coding MGP_CASTEiJ_T0088695.1 MGP_CASTEiJ_G0032541.1 mouse_genomes_project 8 31602743 31625413 + Gsr protein_coding processed_transcript MGP_CASTEiJ_T0088696.1 MGP_CASTEiJ_G0032541.1 mouse_genomes_project 8 31603460 31661437 + MGP_CASTEiJ_P0088696 Gsr protein_coding protein_coding MGP_CASTEiJ_T0088697.1 MGP_CASTEiJ_G0032541.1 mouse_genomes_project 8 31620260 31641174 + Gsr protein_coding processed_transcript MGP_CASTEiJ_T0091083.1 MGP_CASTEiJ_G0033276.1 mouse_genomes_project 8 126542123 126595302 - MGP_CASTEiJ_P0091083 Nup133 protein_coding protein_coding MGP_CASTEiJ_T0015360.1 MGP_CASTEiJ_G0013523.1 mouse_genomes_project 8 32314468 32314855 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088622.1 MGP_CASTEiJ_G0032507.1 mouse_genomes_project 8 23471597 23563726 + MGP_CASTEiJ_P0088622 Kcnu1 protein_coding protein_coding MGP_CASTEiJ_T0088623.1 MGP_CASTEiJ_G0032507.1 mouse_genomes_project 8 23530721 23563727 + MGP_CASTEiJ_P0088623 Kcnu1 protein_coding protein_coding MGP_CASTEiJ_T0088624.1 MGP_CASTEiJ_G0032507.1 mouse_genomes_project 8 23530733 23543809 + MGP_CASTEiJ_P0088624 Kcnu1 protein_coding protein_coding MGP_CASTEiJ_T0089920.1 MGP_CASTEiJ_G0032902.1 mouse_genomes_project 8 85059614 85067661 - MGP_CASTEiJ_P0089920 Best2 protein_coding protein_coding MGP_CASTEiJ_T0091085.1 MGP_CASTEiJ_G0033278.1 mouse_genomes_project 8 126650684 126677318 - MGP_CASTEiJ_P0091085 Taf5l protein_coding protein_coding MGP_CASTEiJ_T0091086.1 MGP_CASTEiJ_G0033278.1 mouse_genomes_project 8 126650684 126677017 - MGP_CASTEiJ_P0091086 Taf5l protein_coding protein_coding MGP_CASTEiJ_T0089642.1 MGP_CASTEiJ_G0032821.1 mouse_genomes_project 8 78128470 78132100 - MGP_CASTEiJ_P0089642 Pou4f2 protein_coding protein_coding MGP_CASTEiJ_T0005214.1 MGP_CASTEiJ_G0004428.1 mouse_genomes_project 8 44273224 44375489 - Sorbs2os antisense antisense MGP_CASTEiJ_T0089844.1 MGP_CASTEiJ_G0032883.1 mouse_genomes_project 8 84720864 84729204 - Nfix protein_coding processed_transcript MGP_CASTEiJ_T0089846.1 MGP_CASTEiJ_G0032883.1 mouse_genomes_project 8 84725691 84728702 - Nfix protein_coding processed_transcript MGP_CASTEiJ_T0089847.1 MGP_CASTEiJ_G0032883.1 mouse_genomes_project 8 84725691 84794952 - MGP_CASTEiJ_P0089847 Nfix protein_coding protein_coding MGP_CASTEiJ_T0089848.1 MGP_CASTEiJ_G0032883.1 mouse_genomes_project 8 84725692 84795723 - MGP_CASTEiJ_P0089848 Nfix protein_coding protein_coding MGP_CASTEiJ_T0089849.1 MGP_CASTEiJ_G0032883.1 mouse_genomes_project 8 84729599 84823721 - MGP_CASTEiJ_P0089849 Nfix protein_coding protein_coding MGP_CASTEiJ_T0089850.1 MGP_CASTEiJ_G0032883.1 mouse_genomes_project 8 84729622 84735054 - Nfix protein_coding retained_intron MGP_CASTEiJ_T0089851.1 MGP_CASTEiJ_G0032883.1 mouse_genomes_project 8 84734780 84823691 - MGP_CASTEiJ_P0089851 Nfix protein_coding protein_coding MGP_CASTEiJ_T0090082.1 MGP_CASTEiJ_G0032952.1 mouse_genomes_project 8 93080115 93086704 + MGP_CASTEiJ_P0090082 Irx6 protein_coding protein_coding MGP_CASTEiJ_T0090083.1 MGP_CASTEiJ_G0032952.1 mouse_genomes_project 8 93080585 93086704 + MGP_CASTEiJ_P0090083 Irx6 protein_coding protein_coding MGP_CASTEiJ_T0090368.1 MGP_CASTEiJ_G0033055.1 mouse_genomes_project 8 106586340 106588602 + MGP_CASTEiJ_P0090368 Plekhg4 protein_coding protein_coding MGP_CASTEiJ_T0090369.1 MGP_CASTEiJ_G0033055.1 mouse_genomes_project 8 106587943 106595902 + MGP_CASTEiJ_P0090369 Plekhg4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090370.1 MGP_CASTEiJ_G0033055.1 mouse_genomes_project 8 106588422 106595284 + MGP_CASTEiJ_P0090370 Plekhg4 protein_coding protein_coding MGP_CASTEiJ_T0090371.1 MGP_CASTEiJ_G0033055.1 mouse_genomes_project 8 106588422 106595905 + MGP_CASTEiJ_P0090371 Plekhg4 protein_coding protein_coding MGP_CASTEiJ_T0090372.1 MGP_CASTEiJ_G0033055.1 mouse_genomes_project 8 106593532 106595898 + Plekhg4 protein_coding retained_intron MGP_CASTEiJ_T0005198.1 MGP_CASTEiJ_G0004416.1 mouse_genomes_project 8 12350762 12354670 - 5830468F06Rik antisense antisense MGP_CASTEiJ_T0008863.1 MGP_CASTEiJ_G0007143.1 mouse_genomes_project 8 40201751 40425327 + 2810404M03Rik lincRNA lincRNA MGP_CASTEiJ_T0090280.1 MGP_CASTEiJ_G0033023.1 mouse_genomes_project 8 105554747 105580702 - MGP_CASTEiJ_P0090280 Dync1li2 protein_coding protein_coding MGP_CASTEiJ_T0089393.1 MGP_CASTEiJ_G0032740.1 mouse_genomes_project 8 70246908 70255872 - MGP_CASTEiJ_P0089393 Pik3r2 protein_coding protein_coding MGP_CASTEiJ_T0089394.1 MGP_CASTEiJ_G0032740.1 mouse_genomes_project 8 70247193 70248121 - MGP_CASTEiJ_P0089394 Pik3r2 protein_coding protein_coding MGP_CASTEiJ_T0089395.1 MGP_CASTEiJ_G0032740.1 mouse_genomes_project 8 70247372 70248397 - Pik3r2 protein_coding retained_intron MGP_CASTEiJ_T0089396.1 MGP_CASTEiJ_G0032740.1 mouse_genomes_project 8 70250725 70252335 - Pik3r2 protein_coding retained_intron MGP_CASTEiJ_T0089397.1 MGP_CASTEiJ_G0032740.1 mouse_genomes_project 8 70251105 70253846 - MGP_CASTEiJ_P0089397 Pik3r2 protein_coding protein_coding MGP_CASTEiJ_T0089398.1 MGP_CASTEiJ_G0032740.1 mouse_genomes_project 8 70254167 70255838 - Pik3r2 protein_coding processed_transcript MGP_CASTEiJ_T0091087.1 MGP_CASTEiJ_G0033279.1 mouse_genomes_project 8 126677489 126704954 + MGP_CASTEiJ_P0091087 Urb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091088.1 MGP_CASTEiJ_G0033279.1 mouse_genomes_project 8 126677516 126707281 + MGP_CASTEiJ_P0091088 Urb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0102607.1 MGP_CASTEiJ_G0039331.1 mouse_genomes_project 8 18283277 18284265 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0090505.1 MGP_CASTEiJ_G0033110.1 mouse_genomes_project 8 108502137 108543433 + MGP_CASTEiJ_P0090505 Cyb5b protein_coding protein_coding MGP_CASTEiJ_T0090821.1 MGP_CASTEiJ_G0033212.1 mouse_genomes_project 8 122659953 123024058 + MGP_CASTEiJ_P0090821 Gse1 protein_coding protein_coding MGP_CASTEiJ_T0090822.1 MGP_CASTEiJ_G0033212.1 mouse_genomes_project 8 122950155 123051785 + MGP_CASTEiJ_P0090822 Gse1 protein_coding protein_coding MGP_CASTEiJ_T0090823.1 MGP_CASTEiJ_G0033212.1 mouse_genomes_project 8 123006608 123049877 + MGP_CASTEiJ_P0090823 Gse1 protein_coding protein_coding MGP_CASTEiJ_T0090824.1 MGP_CASTEiJ_G0033212.1 mouse_genomes_project 8 123008179 123049723 + MGP_CASTEiJ_P0090824 Gse1 protein_coding protein_coding MGP_CASTEiJ_T0090825.1 MGP_CASTEiJ_G0033212.1 mouse_genomes_project 8 123021370 123051667 + MGP_CASTEiJ_P0090825 Gse1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090826.1 MGP_CASTEiJ_G0033212.1 mouse_genomes_project 8 123041622 123043619 + Gse1 protein_coding retained_intron MGP_CASTEiJ_T0090827.1 MGP_CASTEiJ_G0033212.1 mouse_genomes_project 8 123041670 123045560 + Gse1 protein_coding processed_transcript MGP_CASTEiJ_T0008911.1 MGP_CASTEiJ_G0007181.1 mouse_genomes_project 8 87563378 87564559 - 1700120C18Rik lincRNA lincRNA MGP_CASTEiJ_T0089119.1 MGP_CASTEiJ_G0032659.1 mouse_genomes_project 8 64233133 64239362 - MGP_CASTEiJ_P0089119 Trim75 protein_coding protein_coding MGP_CASTEiJ_T0101309.1 MGP_CASTEiJ_G0038222.1 mouse_genomes_project 8 52059815 52059931 + Gm23666 snoRNA snoRNA MGP_CASTEiJ_T0100074.1 MGP_CASTEiJ_G0036987.1 mouse_genomes_project 8 76816579 76816771 + Gm23260 snRNA snRNA MGP_CASTEiJ_T0088933.1 MGP_CASTEiJ_G0032604.1 mouse_genomes_project 8 45174893 45223940 - MGP_CASTEiJ_P0088933 Primpol protein_coding protein_coding MGP_CASTEiJ_T0088934.1 MGP_CASTEiJ_G0032604.1 mouse_genomes_project 8 45175476 45223940 - Primpol protein_coding retained_intron MGP_CASTEiJ_T0088935.1 MGP_CASTEiJ_G0032604.1 mouse_genomes_project 8 45189418 45199531 - Primpol protein_coding processed_transcript MGP_CASTEiJ_T0088936.1 MGP_CASTEiJ_G0032604.1 mouse_genomes_project 8 45211823 45219689 - MGP_CASTEiJ_P0088936 Primpol protein_coding protein_coding MGP_CASTEiJ_T0088937.1 MGP_CASTEiJ_G0032604.1 mouse_genomes_project 8 45217452 45223952 - Primpol protein_coding retained_intron MGP_CASTEiJ_T0002259.1 MGP_CASTEiJ_G0002178.1 mouse_genomes_project 8 75144311 75144716 - TEC TEC MGP_CASTEiJ_T0088374.1 MGP_CASTEiJ_G0032413.1 mouse_genomes_project 8 12206053 12220875 + MGP_CASTEiJ_P0088374 Cln8 protein_coding protein_coding MGP_CASTEiJ_T0088375.1 MGP_CASTEiJ_G0032413.1 mouse_genomes_project 8 12214203 12221218 + MGP_CASTEiJ_P0088375 Cln8 protein_coding protein_coding MGP_CASTEiJ_T0088376.1 MGP_CASTEiJ_G0032413.1 mouse_genomes_project 8 12214269 12227861 + MGP_CASTEiJ_P0088376 Cln8 protein_coding protein_coding MGP_CASTEiJ_T0088377.1 MGP_CASTEiJ_G0032413.1 mouse_genomes_project 8 12215162 12220945 + MGP_CASTEiJ_P0088377 Cln8 protein_coding protein_coding MGP_CASTEiJ_T0088378.1 MGP_CASTEiJ_G0032413.1 mouse_genomes_project 8 12215517 12221078 + MGP_CASTEiJ_P0088378 Cln8 protein_coding protein_coding MGP_CASTEiJ_T0090667.1 MGP_CASTEiJ_G0033156.1 mouse_genomes_project 8 113404789 113409935 - MGP_CASTEiJ_P0090667 Ctrb1 protein_coding protein_coding MGP_CASTEiJ_T0088230.1 MGP_CASTEiJ_G0032374.1 mouse_genomes_project 8 8753114 8777908 - MGP_CASTEiJ_P0088230 1700016D06Rik protein_coding protein_coding MGP_CASTEiJ_T0088231.1 MGP_CASTEiJ_G0032374.1 mouse_genomes_project 8 8753667 8758874 - 1700016D06Rik protein_coding processed_transcript MGP_CASTEiJ_T0088232.1 MGP_CASTEiJ_G0032374.1 mouse_genomes_project 8 8753669 8760706 - MGP_CASTEiJ_P0088232 1700016D06Rik protein_coding protein_coding MGP_CASTEiJ_T0090873.1 MGP_CASTEiJ_G0033221.1 mouse_genomes_project 8 123644274 123646999 + MGP_CASTEiJ_P0090873 Foxc2 protein_coding protein_coding MGP_CASTEiJ_T0090761.1 MGP_CASTEiJ_G0033194.1 mouse_genomes_project 8 121803371 121830777 + MGP_CASTEiJ_P0090761 Necab2 protein_coding protein_coding MGP_CASTEiJ_T0090762.1 MGP_CASTEiJ_G0033194.1 mouse_genomes_project 8 121803413 121830548 + Necab2 protein_coding processed_transcript MGP_CASTEiJ_T0090763.1 MGP_CASTEiJ_G0033194.1 mouse_genomes_project 8 121810543 121829082 + MGP_CASTEiJ_P0090763 Necab2 protein_coding protein_coding MGP_CASTEiJ_T0088611.1 MGP_CASTEiJ_G0032501.1 mouse_genomes_project 8 23347877 23378956 - MGP_CASTEiJ_P0088611 Ddhd2 protein_coding protein_coding MGP_CASTEiJ_T0089656.1 MGP_CASTEiJ_G0032826.1 mouse_genomes_project 8 78942314 78981004 - MGP_CASTEiJ_P0089656 1700011L22Rik protein_coding protein_coding MGP_CASTEiJ_T0089478.1 MGP_CASTEiJ_G0032765.1 mouse_genomes_project 8 71086499 71089629 - MGP_CASTEiJ_P0089478 Bst2 protein_coding protein_coding MGP_CASTEiJ_T0088082.1 MGP_CASTEiJ_G0032327.1 mouse_genomes_project 8 514013 520636 + protein_coding retained_intron MGP_CASTEiJ_T0088083.1 MGP_CASTEiJ_G0032327.1 mouse_genomes_project 8 514018 525602 + protein_coding retained_intron MGP_CASTEiJ_T0089701.1 MGP_CASTEiJ_G0032845.1 mouse_genomes_project 8 83239200 83260375 - MGP_CASTEiJ_P0089701 Elmod2 protein_coding protein_coding MGP_CASTEiJ_T0089702.1 MGP_CASTEiJ_G0032845.1 mouse_genomes_project 8 83239590 83260375 - MGP_CASTEiJ_P0089702 Elmod2 protein_coding protein_coding MGP_CASTEiJ_T0089703.1 MGP_CASTEiJ_G0032845.1 mouse_genomes_project 8 83242054 83252489 - Elmod2 protein_coding retained_intron MGP_CASTEiJ_T0089704.1 MGP_CASTEiJ_G0032845.1 mouse_genomes_project 8 83244337 83259337 - Elmod2 protein_coding retained_intron MGP_CASTEiJ_T0089705.1 MGP_CASTEiJ_G0032845.1 mouse_genomes_project 8 83252080 83260293 - Elmod2 protein_coding retained_intron MGP_CASTEiJ_T0089706.1 MGP_CASTEiJ_G0032845.1 mouse_genomes_project 8 83256563 83260293 - Elmod2 protein_coding retained_intron MGP_CASTEiJ_T0089212.1 MGP_CASTEiJ_G0032690.1 mouse_genomes_project 8 69193658 69210203 + MGP_CASTEiJ_P0089212 Atp13a1 protein_coding protein_coding MGP_CASTEiJ_T0090663.1 MGP_CASTEiJ_G0033154.1 mouse_genomes_project 8 113334886 113339692 - Ldhd protein_coding retained_intron MGP_CASTEiJ_T0090664.1 MGP_CASTEiJ_G0033154.1 mouse_genomes_project 8 113336603 113341440 - Ldhd protein_coding retained_intron MGP_CASTEiJ_T0090665.1 MGP_CASTEiJ_G0033154.1 mouse_genomes_project 8 113337374 113341479 - MGP_CASTEiJ_P0090665 Ldhd protein_coding protein_coding MGP_CASTEiJ_T0008835.1 MGP_CASTEiJ_G0007122.1 mouse_genomes_project 8 8815955 8825080 + 1700128E19Rik lincRNA lincRNA MGP_CASTEiJ_T0089483.1 MGP_CASTEiJ_G0032769.1 mouse_genomes_project 8 71124292 71141409 + MGP_CASTEiJ_P0089483 Slc27a1 protein_coding protein_coding MGP_CASTEiJ_T0005237.1 MGP_CASTEiJ_G0004448.1 mouse_genomes_project 8 99680625 99701758 + Gm15679 antisense antisense MGP_CASTEiJ_T0089408.1 MGP_CASTEiJ_G0032748.1 mouse_genomes_project 8 70385907 70388715 - MGP_CASTEiJ_P0089408 Rpl18a protein_coding protein_coding MGP_CASTEiJ_T0089449.1 MGP_CASTEiJ_G0032757.1 mouse_genomes_project 8 70926473 70938283 + MGP_CASTEiJ_P0089449 Babam1 protein_coding protein_coding MGP_CASTEiJ_T0089284.1 MGP_CASTEiJ_G0032710.1 mouse_genomes_project 8 69661251 69677788 - MGP_CASTEiJ_P0089284 Armc6 protein_coding protein_coding MGP_CASTEiJ_T0089285.1 MGP_CASTEiJ_G0032710.1 mouse_genomes_project 8 69661277 69663903 - Armc6 protein_coding retained_intron MGP_CASTEiJ_T0089286.1 MGP_CASTEiJ_G0032710.1 mouse_genomes_project 8 69661560 69663375 - Armc6 protein_coding retained_intron MGP_CASTEiJ_T0089287.1 MGP_CASTEiJ_G0032710.1 mouse_genomes_project 8 69664293 69666286 - Armc6 protein_coding retained_intron MGP_CASTEiJ_T0089288.1 MGP_CASTEiJ_G0032710.1 mouse_genomes_project 8 69665717 69677771 - Armc6 protein_coding retained_intron MGP_CASTEiJ_T0089289.1 MGP_CASTEiJ_G0032710.1 mouse_genomes_project 8 69666426 69677442 - MGP_CASTEiJ_P0089289 Armc6 protein_coding protein_coding MGP_CASTEiJ_T0089700.1 MGP_CASTEiJ_G0032844.1 mouse_genomes_project 8 83209273 83217296 + MGP_CASTEiJ_P0089700 Ucp1 protein_coding protein_coding MGP_CASTEiJ_T0088444.1 MGP_CASTEiJ_G0032447.1 mouse_genomes_project 8 19173316 19188779 + MGP_CASTEiJ_P0088444 Defb1 protein_coding protein_coding MGP_CASTEiJ_T0089149.1 MGP_CASTEiJ_G0032671.1 mouse_genomes_project 8 66815028 66844978 + MGP_CASTEiJ_P0089149 Nat3 protein_coding protein_coding MGP_CASTEiJ_T0089290.1 MGP_CASTEiJ_G0032711.1 mouse_genomes_project 8 69677429 69714620 + MGP_CASTEiJ_P0089290 Sugp2 protein_coding protein_coding MGP_CASTEiJ_T0089291.1 MGP_CASTEiJ_G0032711.1 mouse_genomes_project 8 69677547 69712189 + MGP_CASTEiJ_P0089291 Sugp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089292.1 MGP_CASTEiJ_G0032711.1 mouse_genomes_project 8 69677547 69710126 + MGP_CASTEiJ_P0089292 Sugp2 protein_coding protein_coding MGP_CASTEiJ_T0089293.1 MGP_CASTEiJ_G0032711.1 mouse_genomes_project 8 69677554 69712189 + MGP_CASTEiJ_P0089293 Sugp2 protein_coding protein_coding MGP_CASTEiJ_T0089294.1 MGP_CASTEiJ_G0032711.1 mouse_genomes_project 8 69677938 69688786 + MGP_CASTEiJ_P0089294 Sugp2 protein_coding protein_coding MGP_CASTEiJ_T0089295.1 MGP_CASTEiJ_G0032711.1 mouse_genomes_project 8 69677944 69703853 + Sugp2 protein_coding retained_intron MGP_CASTEiJ_T0089296.1 MGP_CASTEiJ_G0032711.1 mouse_genomes_project 8 69681320 69689113 + MGP_CASTEiJ_P0089296 Sugp2 protein_coding protein_coding MGP_CASTEiJ_T0089297.1 MGP_CASTEiJ_G0032711.1 mouse_genomes_project 8 69689842 69707353 + Sugp2 protein_coding retained_intron MGP_CASTEiJ_T0089298.1 MGP_CASTEiJ_G0032711.1 mouse_genomes_project 8 69697252 69700959 + Sugp2 protein_coding retained_intron MGP_CASTEiJ_T0089299.1 MGP_CASTEiJ_G0032711.1 mouse_genomes_project 8 69701154 69728759 + Sugp2 protein_coding processed_transcript MGP_CASTEiJ_T0089300.1 MGP_CASTEiJ_G0032711.1 mouse_genomes_project 8 69706558 69708487 + Sugp2 protein_coding retained_intron MGP_CASTEiJ_T0089301.1 MGP_CASTEiJ_G0032711.1 mouse_genomes_project 8 69708835 69712189 + Sugp2 protein_coding processed_transcript MGP_CASTEiJ_T0089302.1 MGP_CASTEiJ_G0032711.1 mouse_genomes_project 8 69709525 69712189 + Sugp2 protein_coding retained_intron MGP_CASTEiJ_T0089303.1 MGP_CASTEiJ_G0032711.1 mouse_genomes_project 8 69722496 69728758 + Sugp2 protein_coding processed_transcript MGP_CASTEiJ_T0008948.1 MGP_CASTEiJ_G0007204.1 mouse_genomes_project 8 122511361 122513688 + A130014A01Rik lincRNA lincRNA MGP_CASTEiJ_T0090584.1 MGP_CASTEiJ_G0033138.1 mouse_genomes_project 8 112348644 112349514 - Il34 protein_coding processed_transcript MGP_CASTEiJ_T0090585.1 MGP_CASTEiJ_G0033138.1 mouse_genomes_project 8 112348655 112421565 - MGP_CASTEiJ_P0090585 Il34 protein_coding protein_coding MGP_CASTEiJ_T0090586.1 MGP_CASTEiJ_G0033138.1 mouse_genomes_project 8 112348655 112421534 - MGP_CASTEiJ_P0090586 Il34 protein_coding protein_coding MGP_CASTEiJ_T0090587.1 MGP_CASTEiJ_G0033138.1 mouse_genomes_project 8 112362078 112405985 - Il34 protein_coding processed_transcript MGP_CASTEiJ_T0090588.1 MGP_CASTEiJ_G0033138.1 mouse_genomes_project 8 112362367 112421586 - Il34 protein_coding processed_transcript MGP_CASTEiJ_T0015389.1 MGP_CASTEiJ_G0013552.1 mouse_genomes_project 8 81151092 81152065 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091137.1 MGP_CASTEiJ_G0033296.1 mouse_genomes_project 8 127776496 127996737 + MGP_CASTEiJ_P0091137 Disc1 protein_coding protein_coding MGP_CASTEiJ_T0091138.1 MGP_CASTEiJ_G0033296.1 mouse_genomes_project 8 127776496 127996737 + MGP_CASTEiJ_P0091138 Disc1 protein_coding protein_coding MGP_CASTEiJ_T0091139.1 MGP_CASTEiJ_G0033296.1 mouse_genomes_project 8 127776496 127996737 + MGP_CASTEiJ_P0091139 Disc1 protein_coding protein_coding MGP_CASTEiJ_T0091140.1 MGP_CASTEiJ_G0033296.1 mouse_genomes_project 8 127776496 127997443 + MGP_CASTEiJ_P0091140 Disc1 protein_coding protein_coding MGP_CASTEiJ_T0091141.1 MGP_CASTEiJ_G0033296.1 mouse_genomes_project 8 127776496 127996737 + MGP_CASTEiJ_P0091141 Disc1 protein_coding protein_coding MGP_CASTEiJ_T0091142.1 MGP_CASTEiJ_G0033296.1 mouse_genomes_project 8 127776496 127997443 + MGP_CASTEiJ_P0091142 Disc1 protein_coding protein_coding MGP_CASTEiJ_T0091143.1 MGP_CASTEiJ_G0033296.1 mouse_genomes_project 8 127776510 127816037 + MGP_CASTEiJ_P0091143 Disc1 protein_coding protein_coding MGP_CASTEiJ_T0091144.1 MGP_CASTEiJ_G0033296.1 mouse_genomes_project 8 127776531 127996734 + MGP_CASTEiJ_P0091144 Disc1 protein_coding protein_coding MGP_CASTEiJ_T0091145.1 MGP_CASTEiJ_G0033296.1 mouse_genomes_project 8 127813012 127827844 + Disc1 protein_coding processed_transcript MGP_CASTEiJ_T0090377.1 MGP_CASTEiJ_G0033057.1 mouse_genomes_project 8 106627479 106656940 + Lrrc36 protein_coding processed_transcript MGP_CASTEiJ_T0090378.1 MGP_CASTEiJ_G0033057.1 mouse_genomes_project 8 106627531 106638700 + Lrrc36 protein_coding processed_transcript MGP_CASTEiJ_T0090379.1 MGP_CASTEiJ_G0033057.1 mouse_genomes_project 8 106627531 106679745 + MGP_CASTEiJ_P0090379 Lrrc36 protein_coding protein_coding MGP_CASTEiJ_T0090380.1 MGP_CASTEiJ_G0033057.1 mouse_genomes_project 8 106639443 106679743 + MGP_CASTEiJ_P0090380 Lrrc36 protein_coding protein_coding MGP_CASTEiJ_T0017734.1 MGP_CASTEiJ_G0015037.1 mouse_genomes_project 8 87443789 87449676 - Gm27208 processed_transcript lincRNA MGP_CASTEiJ_T0017735.1 MGP_CASTEiJ_G0015037.1 mouse_genomes_project 8 87449180 87450297 - Gm27208 processed_transcript TEC MGP_CASTEiJ_T0088208.1 MGP_CASTEiJ_G0032365.1 mouse_genomes_project 8 7208593 7625479 + MGP_CASTEiJ_P0088208 Myo16 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088209.1 MGP_CASTEiJ_G0032365.1 mouse_genomes_project 8 7235470 7625470 + MGP_CASTEiJ_P0088209 Myo16 protein_coding protein_coding MGP_CASTEiJ_T0088205.1 MGP_CASTEiJ_G0032363.1 mouse_genomes_project 8 6920897 6935351 + MGP_CASTEiJ_P0088205 Abhd13 protein_coding protein_coding MGP_CASTEiJ_T0088206.1 MGP_CASTEiJ_G0032363.1 mouse_genomes_project 8 6920907 6935351 + MGP_CASTEiJ_P0088206 Abhd13 protein_coding protein_coding MGP_CASTEiJ_T0002265.1 MGP_CASTEiJ_G0002183.1 mouse_genomes_project 8 108465612 108466394 + TEC TEC MGP_CASTEiJ_T0090673.1 MGP_CASTEiJ_G0033160.1 mouse_genomes_project 8 113631026 113655774 - MGP_CASTEiJ_P0090673 Chst5 protein_coding protein_coding MGP_CASTEiJ_T0089555.1 MGP_CASTEiJ_G0032787.1 mouse_genomes_project 8 71742638 71767251 + MGP_CASTEiJ_P0089555 Rab8a protein_coding protein_coding MGP_CASTEiJ_T0089556.1 MGP_CASTEiJ_G0032787.1 mouse_genomes_project 8 71742751 71757524 + Rab8a protein_coding processed_transcript MGP_CASTEiJ_T0089557.1 MGP_CASTEiJ_G0032787.1 mouse_genomes_project 8 71742797 71757718 + Rab8a protein_coding retained_intron MGP_CASTEiJ_T0090386.1 MGP_CASTEiJ_G0033061.1 mouse_genomes_project 8 106740748 106787217 - MGP_CASTEiJ_P0090386 Atp6v0d1 protein_coding protein_coding MGP_CASTEiJ_T0090387.1 MGP_CASTEiJ_G0033061.1 mouse_genomes_project 8 106747544 106756278 - Atp6v0d1 protein_coding retained_intron MGP_CASTEiJ_T0088423.1 MGP_CASTEiJ_G0032428.1 mouse_genomes_project 8 16552272 16555051 + MGP_CASTEiJ_P0088423 protein_coding protein_coding MGP_CASTEiJ_T0005256.1 MGP_CASTEiJ_G0004465.1 mouse_genomes_project 8 124108227 124109572 + Gm27045 antisense antisense MGP_CASTEiJ_T0101295.1 MGP_CASTEiJ_G0038208.1 mouse_genomes_project 8 20798271 20798403 - Gm24335 snoRNA snoRNA MGP_CASTEiJ_T0090931.1 MGP_CASTEiJ_G0033233.1 mouse_genomes_project 8 124968459 124974798 - MGP_CASTEiJ_P0090931 Trhr2 protein_coding protein_coding MGP_CASTEiJ_T0089142.1 MGP_CASTEiJ_G0032666.1 mouse_genomes_project 8 65934643 65942608 - MGP_CASTEiJ_P0089142 Npy5r protein_coding protein_coding MGP_CASTEiJ_T0100092.1 MGP_CASTEiJ_G0037005.1 mouse_genomes_project 8 113827893 113828000 + Gm22827 snRNA snRNA MGP_CASTEiJ_T0089072.1 MGP_CASTEiJ_G0032647.1 mouse_genomes_project 8 60288990 60461283 + MGP_CASTEiJ_P0089072 Sh3rf1 protein_coding protein_coding MGP_CASTEiJ_T0089968.1 MGP_CASTEiJ_G0032917.1 mouse_genomes_project 8 85448511 85473666 - MGP_CASTEiJ_P0089968 4921524J17Rik protein_coding protein_coding MGP_CASTEiJ_T0088198.1 MGP_CASTEiJ_G0032358.1 mouse_genomes_project 8 5505219 5550842 - MGP_CASTEiJ_P0088198 Efnb2 protein_coding protein_coding MGP_CASTEiJ_T0088199.1 MGP_CASTEiJ_G0032358.1 mouse_genomes_project 8 5508366 5527846 - MGP_CASTEiJ_P0088199 Efnb2 protein_coding protein_coding MGP_CASTEiJ_T0008885.1 MGP_CASTEiJ_G0007163.1 mouse_genomes_project 8 80832650 80859265 + lincRNA lincRNA MGP_CASTEiJ_T0098413.1 MGP_CASTEiJ_G0035344.1 mouse_genomes_project 8 126502982 126504007 + pseudogene pseudogene MGP_CASTEiJ_T0090780.1 MGP_CASTEiJ_G0033201.1 mouse_genomes_project 8 121991677 122049400 - MGP_CASTEiJ_P0090780 Kcng4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090781.1 MGP_CASTEiJ_G0033201.1 mouse_genomes_project 8 121994091 122005861 - MGP_CASTEiJ_P0090781 Kcng4 protein_coding protein_coding MGP_CASTEiJ_T0090782.1 MGP_CASTEiJ_G0033201.1 mouse_genomes_project 8 121994091 122006195 - MGP_CASTEiJ_P0090782 Kcng4 protein_coding protein_coding MGP_CASTEiJ_T0101305.1 MGP_CASTEiJ_G0038218.1 mouse_genomes_project 8 44117777 44117914 - Gm23604 snoRNA snoRNA MGP_CASTEiJ_T0008965.1 MGP_CASTEiJ_G0007218.1 mouse_genomes_project 8 124434441 124445726 + Gm26812 lincRNA lincRNA MGP_CASTEiJ_T0008966.1 MGP_CASTEiJ_G0007218.1 mouse_genomes_project 8 124436143 124445434 + Gm26812 lincRNA lincRNA MGP_CASTEiJ_T0088468.1 MGP_CASTEiJ_G0032463.1 mouse_genomes_project 8 19637179 19665036 + MGP_CASTEiJ_P0088468 Vps36 protein_coding protein_coding MGP_CASTEiJ_T0088469.1 MGP_CASTEiJ_G0032463.1 mouse_genomes_project 8 19637212 19649990 + Vps36 protein_coding processed_transcript MGP_CASTEiJ_T0088470.1 MGP_CASTEiJ_G0032463.1 mouse_genomes_project 8 19661211 19662831 + Vps36 protein_coding retained_intron MGP_CASTEiJ_T0089582.1 MGP_CASTEiJ_G0032801.1 mouse_genomes_project 8 72174266 72191279 + MGP_CASTEiJ_P0089582 Tmem38a protein_coding protein_coding MGP_CASTEiJ_T0015370.1 MGP_CASTEiJ_G0013533.1 mouse_genomes_project 8 60179900 60180273 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090447.1 MGP_CASTEiJ_G0033087.1 mouse_genomes_project 8 107336531 107413438 + MGP_CASTEiJ_P0090447 Nfatc3 protein_coding protein_coding MGP_CASTEiJ_T0005221.1 MGP_CASTEiJ_G0004434.1 mouse_genomes_project 8 60185163 60257588 - Gm16178 antisense antisense MGP_CASTEiJ_T0089371.1 MGP_CASTEiJ_G0032727.1 mouse_genomes_project 8 70066261 70069051 + MGP_CASTEiJ_P0089371 Isyna1 protein_coding protein_coding MGP_CASTEiJ_T0008940.1 MGP_CASTEiJ_G0007198.1 mouse_genomes_project 8 107525190 107724747 - Gm26786 lincRNA lincRNA MGP_CASTEiJ_T0101321.1 MGP_CASTEiJ_G0038234.1 mouse_genomes_project 8 70387030 70387161 - Snora68 snoRNA snoRNA MGP_CASTEiJ_T0090571.1 MGP_CASTEiJ_G0033132.1 mouse_genomes_project 8 111663660 111665651 + MGP_CASTEiJ_P0090571 Gm21964 protein_coding protein_coding MGP_CASTEiJ_T0015398.1 MGP_CASTEiJ_G0013561.1 mouse_genomes_project 8 89372791 89373406 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088247.1 MGP_CASTEiJ_G0032381.1 mouse_genomes_project 8 9752008 9839325 - MGP_CASTEiJ_P0088247 Tubgcp3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088248.1 MGP_CASTEiJ_G0032381.1 mouse_genomes_project 8 9778682 9839347 - MGP_CASTEiJ_P0088248 Tubgcp3 protein_coding protein_coding MGP_CASTEiJ_T0088249.1 MGP_CASTEiJ_G0032381.1 mouse_genomes_project 8 9778682 9839198 - MGP_CASTEiJ_P0088249 Tubgcp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088250.1 MGP_CASTEiJ_G0032381.1 mouse_genomes_project 8 9778684 9803000 - Tubgcp3 protein_coding retained_intron MGP_CASTEiJ_T0088251.1 MGP_CASTEiJ_G0032381.1 mouse_genomes_project 8 9779579 9802973 - Tubgcp3 protein_coding retained_intron MGP_CASTEiJ_T0088252.1 MGP_CASTEiJ_G0032381.1 mouse_genomes_project 8 9787086 9823510 - Tubgcp3 protein_coding retained_intron MGP_CASTEiJ_T0088253.1 MGP_CASTEiJ_G0032381.1 mouse_genomes_project 8 9795642 9839222 - Tubgcp3 protein_coding retained_intron MGP_CASTEiJ_T0088254.1 MGP_CASTEiJ_G0032381.1 mouse_genomes_project 8 9814408 9821790 - Tubgcp3 protein_coding retained_intron MGP_CASTEiJ_T0088255.1 MGP_CASTEiJ_G0032381.1 mouse_genomes_project 8 9820133 9823524 - MGP_CASTEiJ_P0088255 Tubgcp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088256.1 MGP_CASTEiJ_G0032381.1 mouse_genomes_project 8 9820168 9839058 - MGP_CASTEiJ_P0088256 Tubgcp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088434.1 MGP_CASTEiJ_G0032438.1 mouse_genomes_project 8 18323335 18328342 + MGP_CASTEiJ_P0088434 Defb33 protein_coding protein_coding MGP_CASTEiJ_T0089936.1 MGP_CASTEiJ_G0032908.1 mouse_genomes_project 8 85127086 85130494 + MGP_CASTEiJ_P0089936 Dhps protein_coding protein_coding MGP_CASTEiJ_T0089937.1 MGP_CASTEiJ_G0032908.1 mouse_genomes_project 8 85127125 85130488 + MGP_CASTEiJ_P0089937 Dhps protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089938.1 MGP_CASTEiJ_G0032908.1 mouse_genomes_project 8 85127135 85128140 + Dhps protein_coding retained_intron MGP_CASTEiJ_T0089939.1 MGP_CASTEiJ_G0032908.1 mouse_genomes_project 8 85127630 85128913 + Dhps protein_coding retained_intron MGP_CASTEiJ_T0089940.1 MGP_CASTEiJ_G0032908.1 mouse_genomes_project 8 85128389 85130483 + Dhps protein_coding retained_intron MGP_CASTEiJ_T0089941.1 MGP_CASTEiJ_G0032908.1 mouse_genomes_project 8 85128389 85129341 + Dhps protein_coding retained_intron MGP_CASTEiJ_T0089942.1 MGP_CASTEiJ_G0032908.1 mouse_genomes_project 8 85128912 85129779 + Dhps protein_coding retained_intron MGP_CASTEiJ_T0089943.1 MGP_CASTEiJ_G0032908.1 mouse_genomes_project 8 85130030 85130483 + Dhps protein_coding retained_intron MGP_CASTEiJ_T0008952.1 MGP_CASTEiJ_G0007208.1 mouse_genomes_project 8 123120258 123130118 + Gm26537 lincRNA lincRNA MGP_CASTEiJ_T0089561.1 MGP_CASTEiJ_G0032790.1 mouse_genomes_project 8 71800231 71800386 - MGP_CASTEiJ_P0089561 Gm11034 protein_coding protein_coding MGP_CASTEiJ_T0010633.1 MGP_CASTEiJ_G0008821.1 mouse_genomes_project 8 5581760 5581830 - Mir7654 miRNA miRNA MGP_CASTEiJ_T0101313.1 MGP_CASTEiJ_G0038226.1 mouse_genomes_project 8 61922072 61922186 + Gm22324 snoRNA snoRNA MGP_CASTEiJ_T0101331.1 MGP_CASTEiJ_G0038244.1 mouse_genomes_project 8 91343249 91343381 - Gm22428 snoRNA snoRNA MGP_CASTEiJ_T0101322.1 MGP_CASTEiJ_G0038235.1 mouse_genomes_project 8 72729795 72729935 - Gm22532 snoRNA snoRNA MGP_CASTEiJ_T0091053.1 MGP_CASTEiJ_G0033264.1 mouse_genomes_project 8 126022890 126059818 + MGP_CASTEiJ_P0091053 Spire2 protein_coding protein_coding MGP_CASTEiJ_T0090645.1 MGP_CASTEiJ_G0033152.1 mouse_genomes_project 8 113150631 113225525 - MGP_CASTEiJ_P0090645 Wdr59 protein_coding protein_coding MGP_CASTEiJ_T0090646.1 MGP_CASTEiJ_G0033152.1 mouse_genomes_project 8 113152660 113223219 - MGP_CASTEiJ_P0090646 Wdr59 protein_coding protein_coding MGP_CASTEiJ_T0090647.1 MGP_CASTEiJ_G0033152.1 mouse_genomes_project 8 113160283 113245180 - MGP_CASTEiJ_P0090647 Wdr59 protein_coding unknown_likely_coding MGP_CASTEiJ_T0015380.1 MGP_CASTEiJ_G0013543.1 mouse_genomes_project 8 74811751 74812776 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0089120.1 MGP_CASTEiJ_G0032660.1 mouse_genomes_project 8 64249405 64273776 - MGP_CASTEiJ_P0089120 Trim60 protein_coding protein_coding MGP_CASTEiJ_T0005249.1 MGP_CASTEiJ_G0004458.1 mouse_genomes_project 8 114353774 114368752 - Gm26994 antisense antisense MGP_CASTEiJ_T0090458.1 MGP_CASTEiJ_G0033090.1 mouse_genomes_project 8 107451684 107482574 + MGP_CASTEiJ_P0090458 Slc7a6 protein_coding protein_coding MGP_CASTEiJ_T0090648.1 MGP_CASTEiJ_G0033153.1 mouse_genomes_project 8 113243935 113336821 + MGP_CASTEiJ_P0090648 Znrf1 protein_coding protein_coding MGP_CASTEiJ_T0090649.1 MGP_CASTEiJ_G0033153.1 mouse_genomes_project 8 113244445 113337133 + MGP_CASTEiJ_P0090649 Znrf1 protein_coding protein_coding MGP_CASTEiJ_T0090650.1 MGP_CASTEiJ_G0033153.1 mouse_genomes_project 8 113244445 113337133 + MGP_CASTEiJ_P0090650 Znrf1 protein_coding protein_coding MGP_CASTEiJ_T0090651.1 MGP_CASTEiJ_G0033153.1 mouse_genomes_project 8 113244647 113334880 + MGP_CASTEiJ_P0090651 Znrf1 protein_coding protein_coding MGP_CASTEiJ_T0090652.1 MGP_CASTEiJ_G0033153.1 mouse_genomes_project 8 113244925 113334059 + MGP_CASTEiJ_P0090652 Znrf1 protein_coding protein_coding MGP_CASTEiJ_T0090653.1 MGP_CASTEiJ_G0033153.1 mouse_genomes_project 8 113245075 113333542 + MGP_CASTEiJ_P0090653 Znrf1 protein_coding protein_coding MGP_CASTEiJ_T0090654.1 MGP_CASTEiJ_G0033153.1 mouse_genomes_project 8 113245268 113333021 + MGP_CASTEiJ_P0090654 Znrf1 protein_coding protein_coding MGP_CASTEiJ_T0090655.1 MGP_CASTEiJ_G0033153.1 mouse_genomes_project 8 113245292 113333587 + MGP_CASTEiJ_P0090655 Znrf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090656.1 MGP_CASTEiJ_G0033153.1 mouse_genomes_project 8 113246146 113333657 + MGP_CASTEiJ_P0090656 Znrf1 protein_coding protein_coding MGP_CASTEiJ_T0090657.1 MGP_CASTEiJ_G0033153.1 mouse_genomes_project 8 113246146 113337133 + MGP_CASTEiJ_P0090657 Znrf1 protein_coding protein_coding MGP_CASTEiJ_T0090658.1 MGP_CASTEiJ_G0033153.1 mouse_genomes_project 8 113246268 113320226 + Znrf1 protein_coding processed_transcript MGP_CASTEiJ_T0090659.1 MGP_CASTEiJ_G0033153.1 mouse_genomes_project 8 113249201 113332749 + MGP_CASTEiJ_P0090659 Znrf1 protein_coding protein_coding MGP_CASTEiJ_T0090660.1 MGP_CASTEiJ_G0033153.1 mouse_genomes_project 8 113272124 113317634 + Znrf1 protein_coding processed_transcript MGP_CASTEiJ_T0090661.1 MGP_CASTEiJ_G0033153.1 mouse_genomes_project 8 113317585 113334048 + MGP_CASTEiJ_P0090661 Znrf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090662.1 MGP_CASTEiJ_G0033153.1 mouse_genomes_project 8 113320157 113332860 + MGP_CASTEiJ_P0090662 Znrf1 protein_coding protein_coding MGP_CASTEiJ_T0005255.1 MGP_CASTEiJ_G0004464.1 mouse_genomes_project 8 122436305 122445474 - Gm15684 antisense antisense MGP_CASTEiJ_T0088730.1 MGP_CASTEiJ_G0032548.1 mouse_genomes_project 8 32146563 32162551 + MGP_CASTEiJ_P0088730 Saraf protein_coding protein_coding MGP_CASTEiJ_T0088731.1 MGP_CASTEiJ_G0032548.1 mouse_genomes_project 8 32146573 32174818 + MGP_CASTEiJ_P0088731 Saraf protein_coding unknown_likely_coding MGP_CASTEiJ_T0015344.1 MGP_CASTEiJ_G0013507.1 mouse_genomes_project 8 10155949 10156162 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0089568.1 MGP_CASTEiJ_G0032793.1 mouse_genomes_project 8 71902796 71905420 + MGP_CASTEiJ_P0089568 Klf2 protein_coding protein_coding MGP_CASTEiJ_T0090237.1 MGP_CASTEiJ_G0033006.1 mouse_genomes_project 8 96101755 96118224 - MGP_CASTEiJ_P0090237 Prss54 protein_coding protein_coding MGP_CASTEiJ_T0090238.1 MGP_CASTEiJ_G0033006.1 mouse_genomes_project 8 96101914 96117966 - MGP_CASTEiJ_P0090238 Prss54 protein_coding protein_coding MGP_CASTEiJ_T0089042.1 MGP_CASTEiJ_G0032640.1 mouse_genomes_project 8 57960842 57963390 + MGP_CASTEiJ_P0089042 BC030500 protein_coding protein_coding MGP_CASTEiJ_T0089043.1 MGP_CASTEiJ_G0032640.1 mouse_genomes_project 8 57961344 57962284 + MGP_CASTEiJ_P0089043 BC030500 protein_coding protein_coding MGP_CASTEiJ_T0015357.1 MGP_CASTEiJ_G0013520.1 mouse_genomes_project 8 19675018 19675309 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0089719.1 MGP_CASTEiJ_G0032853.1 mouse_genomes_project 8 83619445 83623874 + Ptger1 protein_coding retained_intron MGP_CASTEiJ_T0089720.1 MGP_CASTEiJ_G0032853.1 mouse_genomes_project 8 83619475 83625356 + MGP_CASTEiJ_P0089720 Ptger1 protein_coding protein_coding MGP_CASTEiJ_T0098412.1 MGP_CASTEiJ_G0035343.1 mouse_genomes_project 8 125226014 125226400 + pseudogene pseudogene MGP_CASTEiJ_T0090316.1 MGP_CASTEiJ_G0033035.1 mouse_genomes_project 8 106104324 106112870 + MGP_CASTEiJ_P0090316 Ces2f protein_coding protein_coding MGP_CASTEiJ_T0091171.1 MGP_CASTEiJ_G0033307.1 mouse_genomes_project 8 129802132 129818643 - MGP_CASTEiJ_P0091171 Tomm20 protein_coding protein_coding MGP_CASTEiJ_T0005235.1 MGP_CASTEiJ_G0004446.1 mouse_genomes_project 8 91952841 91961186 - Gm3235 antisense antisense MGP_CASTEiJ_T0005208.1 MGP_CASTEiJ_G0004423.1 mouse_genomes_project 8 24769353 24770019 - Proscos antisense antisense MGP_CASTEiJ_T0005209.1 MGP_CASTEiJ_G0004423.1 mouse_genomes_project 8 24769358 24769974 - Proscos antisense antisense MGP_CASTEiJ_T0088899.1 MGP_CASTEiJ_G0032597.1 mouse_genomes_project 8 44581012 44609800 + MGP_CASTEiJ_P0088899 Lrp2bp protein_coding protein_coding MGP_CASTEiJ_T0088900.1 MGP_CASTEiJ_G0032597.1 mouse_genomes_project 8 44581017 44609531 + MGP_CASTEiJ_P0088900 Lrp2bp protein_coding protein_coding MGP_CASTEiJ_T0088901.1 MGP_CASTEiJ_G0032597.1 mouse_genomes_project 8 44590487 44611626 + MGP_CASTEiJ_P0088901 Lrp2bp protein_coding protein_coding MGP_CASTEiJ_T0088902.1 MGP_CASTEiJ_G0032597.1 mouse_genomes_project 8 44590496 44609788 + MGP_CASTEiJ_P0088902 Lrp2bp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088903.1 MGP_CASTEiJ_G0032597.1 mouse_genomes_project 8 44591630 44602225 + Lrp2bp protein_coding processed_transcript MGP_CASTEiJ_T0088904.1 MGP_CASTEiJ_G0032597.1 mouse_genomes_project 8 44603954 44611597 + Lrp2bp protein_coding processed_transcript MGP_CASTEiJ_T0089104.1 MGP_CASTEiJ_G0032653.1 mouse_genomes_project 8 63118036 63145677 - MGP_CASTEiJ_P0089104 Sgol2b protein_coding protein_coding MGP_CASTEiJ_T0091101.1 MGP_CASTEiJ_G0033282.1 mouse_genomes_project 8 127200322 127231678 + MGP_CASTEiJ_P0091101 Cog2 protein_coding protein_coding MGP_CASTEiJ_T0091102.1 MGP_CASTEiJ_G0033282.1 mouse_genomes_project 8 127200359 127209592 + MGP_CASTEiJ_P0091102 Cog2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091103.1 MGP_CASTEiJ_G0033282.1 mouse_genomes_project 8 127200360 127225485 + Cog2 protein_coding retained_intron MGP_CASTEiJ_T0091104.1 MGP_CASTEiJ_G0033282.1 mouse_genomes_project 8 127200374 127209564 + MGP_CASTEiJ_P0091104 Cog2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091105.1 MGP_CASTEiJ_G0033282.1 mouse_genomes_project 8 127214852 127224110 + Cog2 protein_coding retained_intron MGP_CASTEiJ_T0088828.1 MGP_CASTEiJ_G0032578.1 mouse_genomes_project 8 39705349 39741640 - MGP_CASTEiJ_P0088828 Asah1 protein_coding protein_coding MGP_CASTEiJ_T0088829.1 MGP_CASTEiJ_G0032578.1 mouse_genomes_project 8 39705811 39715732 - Asah1 protein_coding retained_intron MGP_CASTEiJ_T0088830.1 MGP_CASTEiJ_G0032578.1 mouse_genomes_project 8 39706477 39709569 - Asah1 protein_coding retained_intron MGP_CASTEiJ_T0088831.1 MGP_CASTEiJ_G0032578.1 mouse_genomes_project 8 39711889 39741502 - MGP_CASTEiJ_P0088831 Asah1 protein_coding protein_coding MGP_CASTEiJ_T0088832.1 MGP_CASTEiJ_G0032578.1 mouse_genomes_project 8 39721257 39741640 - MGP_CASTEiJ_P0088832 Asah1 protein_coding protein_coding MGP_CASTEiJ_T0088854.1 MGP_CASTEiJ_G0032590.1 mouse_genomes_project 8 43936321 43953453 - MGP_CASTEiJ_P0088854 Tlr3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088433.1 MGP_CASTEiJ_G0032437.1 mouse_genomes_project 8 17000107 17002669 + MGP_CASTEiJ_P0088433 Defb7 protein_coding protein_coding MGP_CASTEiJ_T0089784.1 MGP_CASTEiJ_G0032873.1 mouse_genomes_project 8 84141302 84155976 + MGP_CASTEiJ_P0089784 4930432K21Rik protein_coding protein_coding MGP_CASTEiJ_T0089785.1 MGP_CASTEiJ_G0032873.1 mouse_genomes_project 8 84141430 84166289 + MGP_CASTEiJ_P0089785 4930432K21Rik protein_coding protein_coding MGP_CASTEiJ_T0089786.1 MGP_CASTEiJ_G0032873.1 mouse_genomes_project 8 84141523 84166288 + MGP_CASTEiJ_P0089786 4930432K21Rik protein_coding protein_coding MGP_CASTEiJ_T0098664.1 MGP_CASTEiJ_G0035595.1 mouse_genomes_project 8 71687029 71687116 + Gm24747 rRNA rRNA MGP_CASTEiJ_T0090832.1 MGP_CASTEiJ_G0033214.1 mouse_genomes_project 8 123080607 123110504 - MGP_CASTEiJ_P0090832 1190005I06Rik protein_coding protein_coding MGP_CASTEiJ_T0090834.1 MGP_CASTEiJ_G0033214.1 mouse_genomes_project 8 123080806 123123955 - MGP_CASTEiJ_P0090834 1190005I06Rik protein_coding protein_coding MGP_CASTEiJ_T0090835.1 MGP_CASTEiJ_G0033214.1 mouse_genomes_project 8 123080940 123110375 - MGP_CASTEiJ_P0090835 1190005I06Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089958.1 MGP_CASTEiJ_G0032912.1 mouse_genomes_project 8 85164548 85174681 - MGP_CASTEiJ_P0089958 Zfp791 protein_coding protein_coding MGP_CASTEiJ_T0005193.1 MGP_CASTEiJ_G0004413.1 mouse_genomes_project 8 10084509 10101277 - Gm15351 antisense antisense MGP_CASTEiJ_T0005194.1 MGP_CASTEiJ_G0004413.1 mouse_genomes_project 8 10098137 10101416 - Gm15351 antisense antisense MGP_CASTEiJ_T0005195.1 MGP_CASTEiJ_G0004413.1 mouse_genomes_project 8 10100238 10101131 - Gm15351 antisense antisense MGP_CASTEiJ_T0015355.1 MGP_CASTEiJ_G0013518.1 mouse_genomes_project 8 19220969 19221305 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010717.1 MGP_CASTEiJ_G0008905.1 mouse_genomes_project 8 125797693 125797760 + Mir7080 miRNA miRNA MGP_CASTEiJ_T0008857.1 MGP_CASTEiJ_G0007138.1 mouse_genomes_project 8 32019011 32035969 + lincRNA lincRNA MGP_CASTEiJ_T0008858.1 MGP_CASTEiJ_G0007138.1 mouse_genomes_project 8 32034744 32037174 + lincRNA lincRNA MGP_CASTEiJ_T0089436.1 MGP_CASTEiJ_G0032754.1 mouse_genomes_project 8 70899595 70902686 + MGP_CASTEiJ_P0089436 Ocel1 protein_coding protein_coding MGP_CASTEiJ_T0089437.1 MGP_CASTEiJ_G0032754.1 mouse_genomes_project 8 70899636 70901987 + MGP_CASTEiJ_P0089437 Ocel1 protein_coding protein_coding MGP_CASTEiJ_T0089438.1 MGP_CASTEiJ_G0032754.1 mouse_genomes_project 8 70899643 70907668 + MGP_CASTEiJ_P0089438 Ocel1 protein_coding protein_coding MGP_CASTEiJ_T0089439.1 MGP_CASTEiJ_G0032754.1 mouse_genomes_project 8 70900770 70901253 + Ocel1 protein_coding retained_intron MGP_CASTEiJ_T0101338.1 MGP_CASTEiJ_G0038251.1 mouse_genomes_project 8 111366903 111366988 + Snord71 snoRNA snoRNA MGP_CASTEiJ_T0088463.1 MGP_CASTEiJ_G0032461.1 mouse_genomes_project 8 19570760 19608435 - MGP_CASTEiJ_P0088463 Nek3 protein_coding protein_coding MGP_CASTEiJ_T0088464.1 MGP_CASTEiJ_G0032461.1 mouse_genomes_project 8 19570760 19608412 - MGP_CASTEiJ_P0088464 Nek3 protein_coding protein_coding MGP_CASTEiJ_T0088465.1 MGP_CASTEiJ_G0032461.1 mouse_genomes_project 8 19570763 19604760 - MGP_CASTEiJ_P0088465 Nek3 protein_coding protein_coding MGP_CASTEiJ_T0088466.1 MGP_CASTEiJ_G0032461.1 mouse_genomes_project 8 19571163 19573934 - Nek3 protein_coding retained_intron MGP_CASTEiJ_T0090688.1 MGP_CASTEiJ_G0033167.1 mouse_genomes_project 8 115480227 115489855 + MGP_CASTEiJ_P0090688 Mon1b protein_coding protein_coding MGP_CASTEiJ_T0090689.1 MGP_CASTEiJ_G0033167.1 mouse_genomes_project 8 115480440 115489855 + MGP_CASTEiJ_P0090689 Mon1b protein_coding protein_coding MGP_CASTEiJ_T0088162.1 MGP_CASTEiJ_G0032348.1 mouse_genomes_project 8 1111752 1114964 + MGP_CASTEiJ_P0088162 Tgfbr3l protein_coding protein_coding MGP_CASTEiJ_T0088163.1 MGP_CASTEiJ_G0032348.1 mouse_genomes_project 8 1112171 1113061 + Tgfbr3l protein_coding processed_transcript MGP_CASTEiJ_T0088164.1 MGP_CASTEiJ_G0032348.1 mouse_genomes_project 8 1113869 1114964 + Tgfbr3l protein_coding processed_transcript MGP_CASTEiJ_T0089714.1 MGP_CASTEiJ_G0032850.1 mouse_genomes_project 8 83509647 83536044 - MGP_CASTEiJ_P0089714 Tecr protein_coding protein_coding MGP_CASTEiJ_T0089715.1 MGP_CASTEiJ_G0032850.1 mouse_genomes_project 8 83509647 83536044 - MGP_CASTEiJ_P0089715 Tecr protein_coding protein_coding MGP_CASTEiJ_T0089716.1 MGP_CASTEiJ_G0032850.1 mouse_genomes_project 8 83509647 83535982 - MGP_CASTEiJ_P0089716 Tecr protein_coding protein_coding MGP_CASTEiJ_T0088522.1 MGP_CASTEiJ_G0032480.1 mouse_genomes_project 8 20731527 20744079 - MGP_CASTEiJ_P0088522 Gins4 protein_coding protein_coding MGP_CASTEiJ_T0088404.1 MGP_CASTEiJ_G0032419.1 mouse_genomes_project 8 15998888 16218069 + MGP_CASTEiJ_P0088404 Mcph1 protein_coding protein_coding MGP_CASTEiJ_T0088405.1 MGP_CASTEiJ_G0032419.1 mouse_genomes_project 8 15998921 16122902 + MGP_CASTEiJ_P0088405 Mcph1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088406.1 MGP_CASTEiJ_G0032419.1 mouse_genomes_project 8 15999336 16098989 + Mcph1 protein_coding retained_intron MGP_CASTEiJ_T0088407.1 MGP_CASTEiJ_G0032419.1 mouse_genomes_project 8 15999342 16037995 + MGP_CASTEiJ_P0088407 Mcph1 protein_coding protein_coding MGP_CASTEiJ_T0088408.1 MGP_CASTEiJ_G0032419.1 mouse_genomes_project 8 16030648 16036974 + MGP_CASTEiJ_P0088408 Mcph1 protein_coding protein_coding MGP_CASTEiJ_T0088055.1 MGP_CASTEiJ_G0032319.1 mouse_genomes_project 8 58180 200025 - MGP_CASTEiJ_P0088055 Insr protein_coding protein_coding MGP_CASTEiJ_T0088056.1 MGP_CASTEiJ_G0032319.1 mouse_genomes_project 8 63694 200321 - MGP_CASTEiJ_P0088056 Insr protein_coding unknown_likely_coding MGP_CASTEiJ_T0088057.1 MGP_CASTEiJ_G0032319.1 mouse_genomes_project 8 64031 178485 - MGP_CASTEiJ_P0088057 Insr protein_coding unknown_likely_coding MGP_CASTEiJ_T0088058.1 MGP_CASTEiJ_G0032319.1 mouse_genomes_project 8 126007 199959 - Insr protein_coding retained_intron MGP_CASTEiJ_T0089681.1 MGP_CASTEiJ_G0032838.1 mouse_genomes_project 8 81195186 81632425 + MGP_CASTEiJ_P0089681 Inpp4b protein_coding protein_coding MGP_CASTEiJ_T0089682.1 MGP_CASTEiJ_G0032838.1 mouse_genomes_project 8 81195188 81965959 + MGP_CASTEiJ_P0089682 Inpp4b protein_coding protein_coding MGP_CASTEiJ_T0089683.1 MGP_CASTEiJ_G0032838.1 mouse_genomes_project 8 81195192 82022071 + MGP_CASTEiJ_P0089683 Inpp4b protein_coding protein_coding MGP_CASTEiJ_T0089684.1 MGP_CASTEiJ_G0032838.1 mouse_genomes_project 8 81195192 82022303 + MGP_CASTEiJ_P0089684 Inpp4b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089685.1 MGP_CASTEiJ_G0032838.1 mouse_genomes_project 8 81195192 82024554 + MGP_CASTEiJ_P0089685 Inpp4b protein_coding protein_coding MGP_CASTEiJ_T0089686.1 MGP_CASTEiJ_G0032838.1 mouse_genomes_project 8 81605951 82022076 + MGP_CASTEiJ_P0089686 Inpp4b protein_coding protein_coding MGP_CASTEiJ_T0089687.1 MGP_CASTEiJ_G0032838.1 mouse_genomes_project 8 81658934 81707008 + Inpp4b protein_coding processed_transcript MGP_CASTEiJ_T0089688.1 MGP_CASTEiJ_G0032838.1 mouse_genomes_project 8 81661837 81781794 + Inpp4b protein_coding processed_transcript MGP_CASTEiJ_T0089689.1 MGP_CASTEiJ_G0032838.1 mouse_genomes_project 8 81665107 81965959 + MGP_CASTEiJ_P0089689 Inpp4b protein_coding protein_coding MGP_CASTEiJ_T0089690.1 MGP_CASTEiJ_G0032838.1 mouse_genomes_project 8 81739736 81849895 + Inpp4b protein_coding processed_transcript MGP_CASTEiJ_T0089691.1 MGP_CASTEiJ_G0032838.1 mouse_genomes_project 8 81752739 82022085 + MGP_CASTEiJ_P0089691 Inpp4b protein_coding protein_coding MGP_CASTEiJ_T0089692.1 MGP_CASTEiJ_G0032838.1 mouse_genomes_project 8 81788866 81800937 + Inpp4b protein_coding processed_transcript MGP_CASTEiJ_T0010698.1 MGP_CASTEiJ_G0008886.1 mouse_genomes_project 8 108437829 108437911 - Mir7075 miRNA miRNA MGP_CASTEiJ_T0010705.1 MGP_CASTEiJ_G0008893.1 mouse_genomes_project 8 112853659 112853741 + Gm23193 miRNA miRNA MGP_CASTEiJ_T0090161.1 MGP_CASTEiJ_G0032979.1 mouse_genomes_project 8 95036814 95074690 + MGP_CASTEiJ_P0090161 Cpne2 protein_coding protein_coding MGP_CASTEiJ_T0090162.1 MGP_CASTEiJ_G0032979.1 mouse_genomes_project 8 95036863 95052983 + Cpne2 protein_coding retained_intron MGP_CASTEiJ_T0090163.1 MGP_CASTEiJ_G0032979.1 mouse_genomes_project 8 95036891 95053979 + Cpne2 protein_coding processed_transcript MGP_CASTEiJ_T0090164.1 MGP_CASTEiJ_G0032979.1 mouse_genomes_project 8 95036891 95074551 + MGP_CASTEiJ_P0090164 Cpne2 protein_coding protein_coding MGP_CASTEiJ_T0090165.1 MGP_CASTEiJ_G0032979.1 mouse_genomes_project 8 95066791 95074275 + Cpne2 protein_coding retained_intron MGP_CASTEiJ_T0089513.1 MGP_CASTEiJ_G0032775.1 mouse_genomes_project 8 71245299 71246662 + MGP_CASTEiJ_P0089513 Insl3 protein_coding protein_coding MGP_CASTEiJ_T0090752.1 MGP_CASTEiJ_G0033191.1 mouse_genomes_project 8 121684055 121690626 + MGP_CASTEiJ_P0090752 Hsbp1 protein_coding protein_coding MGP_CASTEiJ_T0017727.1 MGP_CASTEiJ_G0015034.1 mouse_genomes_project 8 77250695 77343859 + processed_transcript processed_transcript MGP_CASTEiJ_T0017728.1 MGP_CASTEiJ_G0015034.1 mouse_genomes_project 8 77297365 77439679 + processed_transcript processed_transcript MGP_CASTEiJ_T0017729.1 MGP_CASTEiJ_G0015034.1 mouse_genomes_project 8 77435036 77438899 + processed_transcript processed_transcript MGP_CASTEiJ_T0089480.1 MGP_CASTEiJ_G0032767.1 mouse_genomes_project 8 71107932 71112499 - MGP_CASTEiJ_P0089480 Tmem221 protein_coding protein_coding MGP_CASTEiJ_T0010639.1 MGP_CASTEiJ_G0008827.1 mouse_genomes_project 8 10374197 10374265 - Mir1968 miRNA miRNA MGP_CASTEiJ_T0011380.1 MGP_CASTEiJ_G0009568.1 mouse_genomes_project 8 4401184 4401386 + Gm27545 misc_RNA misc_RNA MGP_CASTEiJ_T0010711.1 MGP_CASTEiJ_G0008899.1 mouse_genomes_project 8 122897423 122897592 - miRNA miRNA MGP_CASTEiJ_T0015366.1 MGP_CASTEiJ_G0013529.1 mouse_genomes_project 8 40457939 40459589 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0089730.1 MGP_CASTEiJ_G0032855.1 mouse_genomes_project 8 83678318 83686487 + MGP_CASTEiJ_P0089730 Ddx39 protein_coding protein_coding MGP_CASTEiJ_T0089731.1 MGP_CASTEiJ_G0032855.1 mouse_genomes_project 8 83678409 83686413 + Ddx39 protein_coding retained_intron MGP_CASTEiJ_T0089732.1 MGP_CASTEiJ_G0032855.1 mouse_genomes_project 8 83678409 83686414 + MGP_CASTEiJ_P0089732 Ddx39 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089733.1 MGP_CASTEiJ_G0032855.1 mouse_genomes_project 8 83678413 83690059 + MGP_CASTEiJ_P0089733 Ddx39 protein_coding protein_coding MGP_CASTEiJ_T0089734.1 MGP_CASTEiJ_G0032855.1 mouse_genomes_project 8 83678689 83686487 + MGP_CASTEiJ_P0089734 Ddx39 protein_coding protein_coding MGP_CASTEiJ_T0089735.1 MGP_CASTEiJ_G0032855.1 mouse_genomes_project 8 83682751 83684429 + Ddx39 protein_coding retained_intron MGP_CASTEiJ_T0089718.1 MGP_CASTEiJ_G0032852.1 mouse_genomes_project 8 83601347 83617405 + MGP_CASTEiJ_P0089718 Gipc1 protein_coding protein_coding MGP_CASTEiJ_T0101664.1 MGP_CASTEiJ_G0038499.1 mouse_genomes_project 8 71505476 71508534 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101665.1 MGP_CASTEiJ_G0038499.1 mouse_genomes_project 8 71506126 71506749 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0088345.1 MGP_CASTEiJ_G0032402.1 mouse_genomes_project 8 10985986 11011571 + MGP_CASTEiJ_P0088345 Cdc16 protein_coding protein_coding MGP_CASTEiJ_T0088346.1 MGP_CASTEiJ_G0032402.1 mouse_genomes_project 8 10985987 10991349 + Cdc16 protein_coding processed_transcript MGP_CASTEiJ_T0088347.1 MGP_CASTEiJ_G0032402.1 mouse_genomes_project 8 10986025 10994843 + Cdc16 protein_coding processed_transcript MGP_CASTEiJ_T0088348.1 MGP_CASTEiJ_G0032402.1 mouse_genomes_project 8 10987078 10991352 + Cdc16 protein_coding retained_intron MGP_CASTEiJ_T0088349.1 MGP_CASTEiJ_G0032402.1 mouse_genomes_project 8 11007351 11011571 + Cdc16 protein_coding retained_intron MGP_CASTEiJ_T0088453.1 MGP_CASTEiJ_G0032456.1 mouse_genomes_project 8 19400491 19406135 + MGP_CASTEiJ_P0088453 Fam90a1a protein_coding protein_coding MGP_CASTEiJ_T0101300.1 MGP_CASTEiJ_G0038213.1 mouse_genomes_project 8 31647182 31654299 + Gm23123 snoRNA snoRNA MGP_CASTEiJ_T0090942.1 MGP_CASTEiJ_G0033235.1 mouse_genomes_project 8 125042274 125043851 + MGP_CASTEiJ_P0090942 Il17c protein_coding protein_coding MGP_CASTEiJ_T0091011.1 MGP_CASTEiJ_G0033257.1 mouse_genomes_project 8 125861605 125871143 - MGP_CASTEiJ_P0091011 Chmp1a protein_coding protein_coding MGP_CASTEiJ_T0091012.1 MGP_CASTEiJ_G0033257.1 mouse_genomes_project 8 125864549 125868136 - Chmp1a protein_coding retained_intron MGP_CASTEiJ_T0091013.1 MGP_CASTEiJ_G0033257.1 mouse_genomes_project 8 125867953 125871146 - Chmp1a protein_coding retained_intron MGP_CASTEiJ_T0090483.1 MGP_CASTEiJ_G0033102.1 mouse_genomes_project 8 108258981 108349801 + MGP_CASTEiJ_P0090483 Sntb2 protein_coding protein_coding MGP_CASTEiJ_T0008849.1 MGP_CASTEiJ_G0007133.1 mouse_genomes_project 8 26384008 26387779 + lincRNA lincRNA MGP_CASTEiJ_T0008850.1 MGP_CASTEiJ_G0007133.1 mouse_genomes_project 8 26384035 26384812 + lincRNA lincRNA MGP_CASTEiJ_T0089630.1 MGP_CASTEiJ_G0032818.1 mouse_genomes_project 8 77301128 77390553 - MGP_CASTEiJ_P0089630 Ednra protein_coding protein_coding MGP_CASTEiJ_T0089631.1 MGP_CASTEiJ_G0032818.1 mouse_genomes_project 8 77310107 77390581 - Ednra protein_coding retained_intron MGP_CASTEiJ_T0101317.1 MGP_CASTEiJ_G0038230.1 mouse_genomes_project 8 66200627 66200756 - Gm25275 snoRNA snoRNA MGP_CASTEiJ_T0015361.1 MGP_CASTEiJ_G0013524.1 mouse_genomes_project 8 32329842 32330814 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0089787.1 MGP_CASTEiJ_G0032874.1 mouse_genomes_project 8 84167432 84170264 - MGP_CASTEiJ_P0089787 Nanos3 protein_coding protein_coding MGP_CASTEiJ_T0090817.1 MGP_CASTEiJ_G0033211.1 mouse_genomes_project 8 122584610 122601671 - MGP_CASTEiJ_P0090817 Fam92b protein_coding protein_coding MGP_CASTEiJ_T0090818.1 MGP_CASTEiJ_G0033211.1 mouse_genomes_project 8 122585687 122601570 - Fam92b protein_coding retained_intron MGP_CASTEiJ_T0090819.1 MGP_CASTEiJ_G0033211.1 mouse_genomes_project 8 122590020 122601632 - MGP_CASTEiJ_P0090819 Fam92b protein_coding protein_coding MGP_CASTEiJ_T0090820.1 MGP_CASTEiJ_G0033211.1 mouse_genomes_project 8 122598945 122601652 - Fam92b protein_coding retained_intron MGP_CASTEiJ_T0101328.1 MGP_CASTEiJ_G0038241.1 mouse_genomes_project 8 86278832 86278956 + Gm23904 snoRNA snoRNA MGP_CASTEiJ_T0088066.1 MGP_CASTEiJ_G0032322.1 mouse_genomes_project 8 390875 401644 - MGP_CASTEiJ_P0088066 Pex11g protein_coding protein_coding MGP_CASTEiJ_T0088067.1 MGP_CASTEiJ_G0032322.1 mouse_genomes_project 8 390878 401609 - MGP_CASTEiJ_P0088067 Pex11g protein_coding protein_coding MGP_CASTEiJ_T0088068.1 MGP_CASTEiJ_G0032322.1 mouse_genomes_project 8 397098 401634 - MGP_CASTEiJ_P0088068 Pex11g protein_coding protein_coding MGP_CASTEiJ_T0090190.1 MGP_CASTEiJ_G0032988.1 mouse_genomes_project 8 95366464 95382820 + MGP_CASTEiJ_P0090190 Coq9 protein_coding protein_coding MGP_CASTEiJ_T0090191.1 MGP_CASTEiJ_G0032988.1 mouse_genomes_project 8 95366548 95378647 + Coq9 protein_coding retained_intron MGP_CASTEiJ_T0090192.1 MGP_CASTEiJ_G0032988.1 mouse_genomes_project 8 95366558 95370884 + Coq9 protein_coding retained_intron MGP_CASTEiJ_T0090193.1 MGP_CASTEiJ_G0032988.1 mouse_genomes_project 8 95366572 95381120 + Coq9 protein_coding retained_intron MGP_CASTEiJ_T0090194.1 MGP_CASTEiJ_G0032988.1 mouse_genomes_project 8 95366572 95381195 + MGP_CASTEiJ_P0090194 Coq9 protein_coding protein_coding MGP_CASTEiJ_T0090195.1 MGP_CASTEiJ_G0032988.1 mouse_genomes_project 8 95378054 95378847 + Coq9 protein_coding retained_intron MGP_CASTEiJ_T0090196.1 MGP_CASTEiJ_G0032988.1 mouse_genomes_project 8 95378909 95381143 + Coq9 protein_coding processed_transcript MGP_CASTEiJ_T0090197.1 MGP_CASTEiJ_G0032988.1 mouse_genomes_project 8 95381439 95382262 + Coq9 protein_coding retained_intron MGP_CASTEiJ_T0089768.1 MGP_CASTEiJ_G0032864.1 mouse_genomes_project 8 83999855 84007525 + Palm3 protein_coding retained_intron MGP_CASTEiJ_T0089769.1 MGP_CASTEiJ_G0032864.1 mouse_genomes_project 8 83999855 84008632 + MGP_CASTEiJ_P0089769 Palm3 protein_coding protein_coding MGP_CASTEiJ_T0089770.1 MGP_CASTEiJ_G0032864.1 mouse_genomes_project 8 84004412 84005387 + Palm3 protein_coding retained_intron MGP_CASTEiJ_T0090023.1 MGP_CASTEiJ_G0032934.1 mouse_genomes_project 8 88309107 88374109 + MGP_CASTEiJ_P0090023 Papd5 protein_coding protein_coding MGP_CASTEiJ_T0090024.1 MGP_CASTEiJ_G0032934.1 mouse_genomes_project 8 88309108 88374109 + MGP_CASTEiJ_P0090024 Papd5 protein_coding protein_coding MGP_CASTEiJ_T0090025.1 MGP_CASTEiJ_G0032934.1 mouse_genomes_project 8 88359554 88363416 + Papd5 protein_coding retained_intron MGP_CASTEiJ_T0090026.1 MGP_CASTEiJ_G0032934.1 mouse_genomes_project 8 88366383 88371790 + MGP_CASTEiJ_P0090026 Papd5 protein_coding protein_coding MGP_CASTEiJ_T0011384.1 MGP_CASTEiJ_G0009572.1 mouse_genomes_project 8 23893112 23893372 - Gm22227 misc_RNA misc_RNA MGP_CASTEiJ_T0089773.1 MGP_CASTEiJ_G0032867.1 mouse_genomes_project 8 84048016 84049596 - MGP_CASTEiJ_P0089773 Gm10643 protein_coding protein_coding MGP_CASTEiJ_T0090180.1 MGP_CASTEiJ_G0032987.1 mouse_genomes_project 8 95342402 95366502 - MGP_CASTEiJ_P0090180 Ciapin1 protein_coding protein_coding MGP_CASTEiJ_T0090181.1 MGP_CASTEiJ_G0032987.1 mouse_genomes_project 8 95345142 95349309 - MGP_CASTEiJ_P0090181 Ciapin1 protein_coding protein_coding MGP_CASTEiJ_T0090182.1 MGP_CASTEiJ_G0032987.1 mouse_genomes_project 8 95345516 95346778 - Ciapin1 protein_coding retained_intron MGP_CASTEiJ_T0090183.1 MGP_CASTEiJ_G0032987.1 mouse_genomes_project 8 95345602 95349315 - Ciapin1 protein_coding processed_transcript MGP_CASTEiJ_T0090184.1 MGP_CASTEiJ_G0032987.1 mouse_genomes_project 8 95346292 95358294 - MGP_CASTEiJ_P0090184 Ciapin1 protein_coding protein_coding MGP_CASTEiJ_T0090185.1 MGP_CASTEiJ_G0032987.1 mouse_genomes_project 8 95347217 95349313 - Ciapin1 protein_coding retained_intron MGP_CASTEiJ_T0090186.1 MGP_CASTEiJ_G0032987.1 mouse_genomes_project 8 95347800 95356590 - Ciapin1 protein_coding processed_transcript MGP_CASTEiJ_T0090187.1 MGP_CASTEiJ_G0032987.1 mouse_genomes_project 8 95350668 95366409 - MGP_CASTEiJ_P0090187 Ciapin1 protein_coding protein_coding MGP_CASTEiJ_T0090188.1 MGP_CASTEiJ_G0032987.1 mouse_genomes_project 8 95356541 95366405 - Ciapin1 protein_coding processed_transcript MGP_CASTEiJ_T0090189.1 MGP_CASTEiJ_G0032987.1 mouse_genomes_project 8 95358287 95366186 - Ciapin1 protein_coding processed_transcript MGP_CASTEiJ_T0008844.1 MGP_CASTEiJ_G0007128.1 mouse_genomes_project 8 19934289 19938368 + Gm17491 lincRNA lincRNA MGP_CASTEiJ_T0010718.1 MGP_CASTEiJ_G0008906.1 mouse_genomes_project 8 126679990 126680072 + Mir1967 miRNA miRNA MGP_CASTEiJ_T0088200.1 MGP_CASTEiJ_G0032359.1 mouse_genomes_project 8 5551902 5554985 + MGP_CASTEiJ_P0088200 protein_coding protein_coding MGP_CASTEiJ_T0088214.1 MGP_CASTEiJ_G0032368.1 mouse_genomes_project 8 8365642 8512562 + MGP_CASTEiJ_P0088214 Col4a2 protein_coding protein_coding MGP_CASTEiJ_T0088215.1 MGP_CASTEiJ_G0032368.1 mouse_genomes_project 8 8459432 8477804 + MGP_CASTEiJ_P0088215 Col4a2 protein_coding protein_coding MGP_CASTEiJ_T0088216.1 MGP_CASTEiJ_G0032368.1 mouse_genomes_project 8 8504411 8507002 + Col4a2 protein_coding processed_transcript MGP_CASTEiJ_T0090671.1 MGP_CASTEiJ_G0033158.1 mouse_genomes_project 8 113492521 113589628 - MGP_CASTEiJ_P0090671 Cfdp1 protein_coding protein_coding MGP_CASTEiJ_T0088729.1 MGP_CASTEiJ_G0032547.1 mouse_genomes_project 8 32127608 32139143 - MGP_CASTEiJ_P0088729 Leprotl1 protein_coding protein_coding MGP_CASTEiJ_T0010666.1 MGP_CASTEiJ_G0008854.1 mouse_genomes_project 8 72576639 72576719 + Mir28b miRNA miRNA MGP_CASTEiJ_T0010689.1 MGP_CASTEiJ_G0008877.1 mouse_genomes_project 8 94833029 94833100 + Mir138-2 miRNA miRNA MGP_CASTEiJ_T0005257.1 MGP_CASTEiJ_G0004466.1 mouse_genomes_project 8 124405846 124406778 + Gm20406 antisense antisense MGP_CASTEiJ_T0090440.1 MGP_CASTEiJ_G0033085.1 mouse_genomes_project 8 107258944 107284345 + MGP_CASTEiJ_P0090440 Dus2 protein_coding protein_coding MGP_CASTEiJ_T0090442.1 MGP_CASTEiJ_G0033085.1 mouse_genomes_project 8 107280156 107330839 + MGP_CASTEiJ_P0090442 Dus2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090443.1 MGP_CASTEiJ_G0033085.1 mouse_genomes_project 8 107280156 107330818 + MGP_CASTEiJ_P0090443 Dus2 protein_coding protein_coding MGP_CASTEiJ_T0090444.1 MGP_CASTEiJ_G0033085.1 mouse_genomes_project 8 107280171 107302605 + Dus2 protein_coding retained_intron MGP_CASTEiJ_T0090445.1 MGP_CASTEiJ_G0033085.1 mouse_genomes_project 8 107306794 107321378 + Dus2 protein_coding retained_intron MGP_CASTEiJ_T0090446.1 MGP_CASTEiJ_G0033085.1 mouse_genomes_project 8 107325702 107329198 + Dus2 protein_coding retained_intron MGP_CASTEiJ_T0089409.1 MGP_CASTEiJ_G0032749.1 mouse_genomes_project 8 70397220 70409049 + MGP_CASTEiJ_P0089409 Map1s protein_coding protein_coding MGP_CASTEiJ_T0090212.1 MGP_CASTEiJ_G0032997.1 mouse_genomes_project 8 95641196 95673000 - MGP_CASTEiJ_P0090212 Kifc3 protein_coding protein_coding MGP_CASTEiJ_T0090213.1 MGP_CASTEiJ_G0032997.1 mouse_genomes_project 8 95641202 95677481 - MGP_CASTEiJ_P0090213 Kifc3 protein_coding protein_coding MGP_CASTEiJ_T0090281.1 MGP_CASTEiJ_G0033024.1 mouse_genomes_project 8 105584573 105644957 - MGP_CASTEiJ_P0090281 Terb1 protein_coding protein_coding MGP_CASTEiJ_T0090282.1 MGP_CASTEiJ_G0033024.1 mouse_genomes_project 8 105584892 105644953 - MGP_CASTEiJ_P0090282 Terb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090283.1 MGP_CASTEiJ_G0033024.1 mouse_genomes_project 8 105584893 105644952 - MGP_CASTEiJ_P0090283 Terb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090284.1 MGP_CASTEiJ_G0033024.1 mouse_genomes_project 8 105585609 105644980 - MGP_CASTEiJ_P0090284 Terb1 protein_coding protein_coding MGP_CASTEiJ_T0005186.1 MGP_CASTEiJ_G0004408.1 mouse_genomes_project 8 8452605 8472423 - Gm15419 antisense antisense MGP_CASTEiJ_T0005258.1 MGP_CASTEiJ_G0004467.1 mouse_genomes_project 8 124495754 124497743 + BC048644 antisense antisense MGP_CASTEiJ_T0005259.1 MGP_CASTEiJ_G0004467.1 mouse_genomes_project 8 124495754 124509174 + BC048644 antisense antisense MGP_CASTEiJ_T0088243.1 MGP_CASTEiJ_G0032377.1 mouse_genomes_project 8 9401067 9402898 + MGP_CASTEiJ_P0088243 A230072I06Rik protein_coding protein_coding MGP_CASTEiJ_T0090724.1 MGP_CASTEiJ_G0033179.1 mouse_genomes_project 8 119069570 119084381 + MGP_CASTEiJ_P0090724 Atmin protein_coding unknown_likely_coding MGP_CASTEiJ_T0090725.1 MGP_CASTEiJ_G0033179.1 mouse_genomes_project 8 119069630 119086575 + MGP_CASTEiJ_P0090725 Atmin protein_coding protein_coding MGP_CASTEiJ_T0101286.1 MGP_CASTEiJ_G0038199.1 mouse_genomes_project 8 4509266 4509395 + Gm25169 snoRNA snoRNA MGP_CASTEiJ_T0090786.1 MGP_CASTEiJ_G0033205.1 mouse_genomes_project 8 122193137 122224997 - MGP_CASTEiJ_P0090786 Cotl1 protein_coding protein_coding MGP_CASTEiJ_T0090787.1 MGP_CASTEiJ_G0033205.1 mouse_genomes_project 8 122193137 122225054 - MGP_CASTEiJ_P0090787 Cotl1 protein_coding protein_coding MGP_CASTEiJ_T0008930.1 MGP_CASTEiJ_G0007192.1 mouse_genomes_project 8 94887980 94889680 + Gm15889 lincRNA lincRNA MGP_CASTEiJ_T0089667.1 MGP_CASTEiJ_G0032830.1 mouse_genomes_project 8 79444982 79480219 - MGP_CASTEiJ_P0089667 Abce1 protein_coding protein_coding MGP_CASTEiJ_T0091057.1 MGP_CASTEiJ_G0033267.1 mouse_genomes_project 8 126103638 126116256 + MGP_CASTEiJ_P0091057 Tubb3 protein_coding protein_coding MGP_CASTEiJ_T0090828.1 MGP_CASTEiJ_G0033213.1 mouse_genomes_project 8 123049028 123061386 - Gins2 protein_coding retained_intron MGP_CASTEiJ_T0090829.1 MGP_CASTEiJ_G0033213.1 mouse_genomes_project 8 123049028 123061710 - MGP_CASTEiJ_P0090829 Gins2 protein_coding protein_coding MGP_CASTEiJ_T0090830.1 MGP_CASTEiJ_G0033213.1 mouse_genomes_project 8 123051938 123056592 - Gins2 protein_coding retained_intron MGP_CASTEiJ_T0090831.1 MGP_CASTEiJ_G0033213.1 mouse_genomes_project 8 123052552 123061440 - Gins2 protein_coding processed_transcript MGP_CASTEiJ_T0089625.1 MGP_CASTEiJ_G0032815.1 mouse_genomes_project 8 76878682 77156942 - MGP_CASTEiJ_P0089625 Arhgap10 protein_coding protein_coding MGP_CASTEiJ_T0089673.1 MGP_CASTEiJ_G0032835.1 mouse_genomes_project 8 80485158 80531855 - MGP_CASTEiJ_P0089673 Smarca5 protein_coding protein_coding MGP_CASTEiJ_T0089674.1 MGP_CASTEiJ_G0032835.1 mouse_genomes_project 8 80492170 80531109 - Smarca5 protein_coding processed_transcript MGP_CASTEiJ_T0089675.1 MGP_CASTEiJ_G0032835.1 mouse_genomes_project 8 80496237 80498518 - Smarca5 protein_coding retained_intron MGP_CASTEiJ_T0089676.1 MGP_CASTEiJ_G0032835.1 mouse_genomes_project 8 80496559 80497682 - Smarca5 protein_coding retained_intron MGP_CASTEiJ_T0089677.1 MGP_CASTEiJ_G0032835.1 mouse_genomes_project 8 80503692 80506410 - Smarca5 protein_coding retained_intron MGP_CASTEiJ_T0089678.1 MGP_CASTEiJ_G0032835.1 mouse_genomes_project 8 80516173 80516984 - Smarca5 protein_coding retained_intron MGP_CASTEiJ_T0089400.1 MGP_CASTEiJ_G0032742.1 mouse_genomes_project 8 70289021 70301952 + MGP_CASTEiJ_P0089400 Il12rb1 protein_coding protein_coding MGP_CASTEiJ_T0088694.1 MGP_CASTEiJ_G0032540.1 mouse_genomes_project 8 31564076 31592197 - MGP_CASTEiJ_P0088694 Ubxn8 protein_coding protein_coding MGP_CASTEiJ_T0100064.1 MGP_CASTEiJ_G0036977.1 mouse_genomes_project 8 49436838 49436901 + Gm23986 snRNA snRNA MGP_CASTEiJ_T0090305.1 MGP_CASTEiJ_G0033031.1 mouse_genomes_project 8 105885974 105901393 + MGP_CASTEiJ_P0090305 Ces2a protein_coding protein_coding MGP_CASTEiJ_T0090306.1 MGP_CASTEiJ_G0033031.1 mouse_genomes_project 8 105894573 105901007 + Ces2a protein_coding retained_intron MGP_CASTEiJ_T0090092.1 MGP_CASTEiJ_G0032958.1 mouse_genomes_project 8 93486541 93512778 - MGP_CASTEiJ_P0090092 Ces1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0090093.1 MGP_CASTEiJ_G0032958.1 mouse_genomes_project 8 93489267 93512879 - MGP_CASTEiJ_P0090093 Ces1b protein_coding protein_coding MGP_CASTEiJ_T0090398.1 MGP_CASTEiJ_G0033065.1 mouse_genomes_project 8 106913925 106921439 + MGP_CASTEiJ_P0090398 Rltpr protein_coding unknown_likely_coding MGP_CASTEiJ_T0090399.1 MGP_CASTEiJ_G0033065.1 mouse_genomes_project 8 106918689 106925984 + MGP_CASTEiJ_P0090399 Rltpr protein_coding protein_coding MGP_CASTEiJ_T0090400.1 MGP_CASTEiJ_G0033065.1 mouse_genomes_project 8 106921678 106926009 + MGP_CASTEiJ_P0090400 Rltpr protein_coding unknown_likely_coding MGP_CASTEiJ_T0090558.1 MGP_CASTEiJ_G0033126.1 mouse_genomes_project 8 111399553 111440826 + Phlpp2 protein_coding retained_intron MGP_CASTEiJ_T0090559.1 MGP_CASTEiJ_G0033126.1 mouse_genomes_project 8 111399614 111483687 + MGP_CASTEiJ_P0090559 Phlpp2 protein_coding protein_coding MGP_CASTEiJ_T0090560.1 MGP_CASTEiJ_G0033126.1 mouse_genomes_project 8 111399622 111483688 + MGP_CASTEiJ_P0090560 Phlpp2 protein_coding protein_coding MGP_CASTEiJ_T0089862.1 MGP_CASTEiJ_G0032889.1 mouse_genomes_project 8 84872286 84877373 - MGP_CASTEiJ_P0089862 Calr protein_coding protein_coding MGP_CASTEiJ_T0089863.1 MGP_CASTEiJ_G0032889.1 mouse_genomes_project 8 84873031 84875353 - Calr protein_coding retained_intron MGP_CASTEiJ_T0089864.1 MGP_CASTEiJ_G0032889.1 mouse_genomes_project 8 84875873 84877269 - Calr protein_coding retained_intron MGP_CASTEiJ_T0089865.1 MGP_CASTEiJ_G0032889.1 mouse_genomes_project 8 84876187 84877265 - Calr protein_coding retained_intron MGP_CASTEiJ_T0088741.1 MGP_CASTEiJ_G0032556.1 mouse_genomes_project 8 33939732 33941589 - MGP_CASTEiJ_P0088741 Cldn23 protein_coding protein_coding MGP_CASTEiJ_T0015340.1 MGP_CASTEiJ_G0013503.1 mouse_genomes_project 8 1664288 1664698 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088939.1 MGP_CASTEiJ_G0032606.1 mouse_genomes_project 8 45356841 45475206 + MGP_CASTEiJ_P0088939 Irf2 protein_coding protein_coding MGP_CASTEiJ_T0090552.1 MGP_CASTEiJ_G0033125.1 mouse_genomes_project 8 111302844 111395221 + MGP_CASTEiJ_P0090552 Ap1g1 protein_coding protein_coding MGP_CASTEiJ_T0090553.1 MGP_CASTEiJ_G0033125.1 mouse_genomes_project 8 111303187 111330899 + Ap1g1 protein_coding processed_transcript MGP_CASTEiJ_T0090554.1 MGP_CASTEiJ_G0033125.1 mouse_genomes_project 8 111303196 111392374 + MGP_CASTEiJ_P0090554 Ap1g1 protein_coding protein_coding MGP_CASTEiJ_T0090555.1 MGP_CASTEiJ_G0033125.1 mouse_genomes_project 8 111371872 111378157 + Ap1g1 protein_coding retained_intron MGP_CASTEiJ_T0090556.1 MGP_CASTEiJ_G0033125.1 mouse_genomes_project 8 111389467 111391305 + Ap1g1 protein_coding retained_intron MGP_CASTEiJ_T0090557.1 MGP_CASTEiJ_G0033125.1 mouse_genomes_project 8 111394122 111395220 + MGP_CASTEiJ_P0090557 Ap1g1 protein_coding protein_coding MGP_CASTEiJ_T0089736.1 MGP_CASTEiJ_G0032856.1 mouse_genomes_project 8 83686389 83704517 - MGP_CASTEiJ_P0089736 Adgre5 protein_coding protein_coding MGP_CASTEiJ_T0089737.1 MGP_CASTEiJ_G0032856.1 mouse_genomes_project 8 83686389 83704517 - MGP_CASTEiJ_P0089737 Adgre5 protein_coding protein_coding MGP_CASTEiJ_T0089738.1 MGP_CASTEiJ_G0032856.1 mouse_genomes_project 8 83686500 83704360 - MGP_CASTEiJ_P0089738 Adgre5 protein_coding protein_coding MGP_CASTEiJ_T0089739.1 MGP_CASTEiJ_G0032856.1 mouse_genomes_project 8 83686502 83704364 - MGP_CASTEiJ_P0089739 Adgre5 protein_coding protein_coding MGP_CASTEiJ_T0089740.1 MGP_CASTEiJ_G0032856.1 mouse_genomes_project 8 83686956 83687975 - Adgre5 protein_coding retained_intron MGP_CASTEiJ_T0089741.1 MGP_CASTEiJ_G0032856.1 mouse_genomes_project 8 83688392 83691472 - Adgre5 protein_coding retained_intron MGP_CASTEiJ_T0089742.1 MGP_CASTEiJ_G0032856.1 mouse_genomes_project 8 83690715 83691498 - Adgre5 protein_coding retained_intron MGP_CASTEiJ_T0089743.1 MGP_CASTEiJ_G0032856.1 mouse_genomes_project 8 83696721 83704374 - MGP_CASTEiJ_P0089743 Adgre5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0015368.1 MGP_CASTEiJ_G0013531.1 mouse_genomes_project 8 56512796 56513507 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090764.1 MGP_CASTEiJ_G0033195.1 mouse_genomes_project 8 121837689 121861545 - MGP_CASTEiJ_P0090764 Slc38a8 protein_coding protein_coding MGP_CASTEiJ_T0090765.1 MGP_CASTEiJ_G0033195.1 mouse_genomes_project 8 121843677 121854688 - MGP_CASTEiJ_P0090765 Slc38a8 protein_coding protein_coding MGP_CASTEiJ_T0090766.1 MGP_CASTEiJ_G0033195.1 mouse_genomes_project 8 121844253 121852612 - Slc38a8 protein_coding retained_intron MGP_CASTEiJ_T0090767.1 MGP_CASTEiJ_G0033195.1 mouse_genomes_project 8 121851916 121861139 - MGP_CASTEiJ_P0090767 Slc38a8 protein_coding protein_coding MGP_CASTEiJ_T0090768.1 MGP_CASTEiJ_G0033195.1 mouse_genomes_project 8 121853783 121861542 - MGP_CASTEiJ_P0090768 Slc38a8 protein_coding protein_coding MGP_CASTEiJ_T0089643.1 MGP_CASTEiJ_G0032822.1 mouse_genomes_project 8 78214944 78220217 - MGP_CASTEiJ_P0089643 Rbmxl1 protein_coding protein_coding MGP_CASTEiJ_T0005262.1 MGP_CASTEiJ_G0004470.1 mouse_genomes_project 8 126478816 126481086 - 2810455O05Rik antisense antisense MGP_CASTEiJ_T0005247.1 MGP_CASTEiJ_G0004456.1 mouse_genomes_project 8 112361834 112367555 + Gm15894 antisense antisense MGP_CASTEiJ_T0100062.1 MGP_CASTEiJ_G0036975.1 mouse_genomes_project 8 44426937 44427063 - Gm25309 snRNA snRNA MGP_CASTEiJ_T0100068.1 MGP_CASTEiJ_G0036981.1 mouse_genomes_project 8 58621234 58621342 + Gm24847 snRNA snRNA MGP_CASTEiJ_T0090001.1 MGP_CASTEiJ_G0032926.1 mouse_genomes_project 8 86764775 86792173 - MGP_CASTEiJ_P0090001 Siah1a protein_coding protein_coding MGP_CASTEiJ_T0008897.1 MGP_CASTEiJ_G0007174.1 mouse_genomes_project 8 87223708 87255482 - Gm10637 lincRNA lincRNA MGP_CASTEiJ_T0008898.1 MGP_CASTEiJ_G0007174.1 mouse_genomes_project 8 87250744 87255493 - Gm10637 lincRNA lincRNA MGP_CASTEiJ_T0090874.1 MGP_CASTEiJ_G0033222.1 mouse_genomes_project 8 123657376 123660077 + MGP_CASTEiJ_P0090874 Foxl1 protein_coding protein_coding MGP_CASTEiJ_T0090425.1 MGP_CASTEiJ_G0033078.1 mouse_genomes_project 8 107157113 107191804 + MGP_CASTEiJ_P0090425 Pskh1 protein_coding protein_coding MGP_CASTEiJ_T0088521.1 MGP_CASTEiJ_G0032479.1 mouse_genomes_project 8 20674002 20708827 - MGP_CASTEiJ_P0088521 Gpat4 protein_coding protein_coding MGP_CASTEiJ_T0089246.1 MGP_CASTEiJ_G0032700.1 mouse_genomes_project 8 69469727 69505132 + MGP_CASTEiJ_P0089246 Sugp1 protein_coding protein_coding MGP_CASTEiJ_T0101346.1 MGP_CASTEiJ_G0038259.1 mouse_genomes_project 8 125767034 125767120 + Snord68 snoRNA snoRNA MGP_CASTEiJ_T0008847.1 MGP_CASTEiJ_G0007131.1 mouse_genomes_project 8 24875190 24883012 + lincRNA lincRNA MGP_CASTEiJ_T0088257.1 MGP_CASTEiJ_G0032382.1 mouse_genomes_project 8 9932379 10053773 + MGP_CASTEiJ_P0088257 Atp11a protein_coding protein_coding MGP_CASTEiJ_T0088258.1 MGP_CASTEiJ_G0032382.1 mouse_genomes_project 8 9932381 10053773 + MGP_CASTEiJ_P0088258 Atp11a protein_coding protein_coding MGP_CASTEiJ_T0088259.1 MGP_CASTEiJ_G0032382.1 mouse_genomes_project 8 9932434 10044762 + MGP_CASTEiJ_P0088259 Atp11a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088260.1 MGP_CASTEiJ_G0032382.1 mouse_genomes_project 8 9992689 9996875 + Atp11a protein_coding retained_intron MGP_CASTEiJ_T0088261.1 MGP_CASTEiJ_G0032382.1 mouse_genomes_project 8 10004838 10010966 + Atp11a protein_coding retained_intron MGP_CASTEiJ_T0088262.1 MGP_CASTEiJ_G0032382.1 mouse_genomes_project 8 10017580 10053712 + MGP_CASTEiJ_P0088262 Atp11a protein_coding protein_coding MGP_CASTEiJ_T0088263.1 MGP_CASTEiJ_G0032382.1 mouse_genomes_project 8 10030274 10042322 + MGP_CASTEiJ_P0088263 Atp11a protein_coding protein_coding MGP_CASTEiJ_T0088264.1 MGP_CASTEiJ_G0032382.1 mouse_genomes_project 8 10032264 10034172 + Atp11a protein_coding processed_transcript MGP_CASTEiJ_T0088265.1 MGP_CASTEiJ_G0032382.1 mouse_genomes_project 8 10042008 10047247 + MGP_CASTEiJ_P0088265 Atp11a protein_coding protein_coding MGP_CASTEiJ_T0088266.1 MGP_CASTEiJ_G0032382.1 mouse_genomes_project 8 10043011 10047244 + MGP_CASTEiJ_P0088266 Atp11a protein_coding protein_coding MGP_CASTEiJ_T0088267.1 MGP_CASTEiJ_G0032382.1 mouse_genomes_project 8 10046606 10050612 + Atp11a protein_coding retained_intron MGP_CASTEiJ_T0088614.1 MGP_CASTEiJ_G0032504.1 mouse_genomes_project 8 23411263 23429887 + MGP_CASTEiJ_P0088614 Lsm1 protein_coding protein_coding MGP_CASTEiJ_T0090604.1 MGP_CASTEiJ_G0033142.1 mouse_genomes_project 8 112546483 112602219 + MGP_CASTEiJ_P0090604 St3gal2 protein_coding protein_coding MGP_CASTEiJ_T0090605.1 MGP_CASTEiJ_G0033142.1 mouse_genomes_project 8 112546483 112599400 + MGP_CASTEiJ_P0090605 St3gal2 protein_coding protein_coding MGP_CASTEiJ_T0090606.1 MGP_CASTEiJ_G0033142.1 mouse_genomes_project 8 112546519 112586573 + St3gal2 protein_coding processed_transcript MGP_CASTEiJ_T0090607.1 MGP_CASTEiJ_G0033142.1 mouse_genomes_project 8 112559979 112586772 + St3gal2 protein_coding processed_transcript MGP_CASTEiJ_T0090608.1 MGP_CASTEiJ_G0033142.1 mouse_genomes_project 8 112568946 112586598 + St3gal2 protein_coding processed_transcript MGP_CASTEiJ_T0090983.1 MGP_CASTEiJ_G0033249.1 mouse_genomes_project 8 125422065 125462134 + MGP_CASTEiJ_P0090983 Acsf3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090144.1 MGP_CASTEiJ_G0032973.1 mouse_genomes_project 8 94668232 94669182 + MGP_CASTEiJ_P0090144 Mt2 protein_coding protein_coding MGP_CASTEiJ_T0088682.1 MGP_CASTEiJ_G0032533.1 mouse_genomes_project 8 29677445 29779402 - MGP_CASTEiJ_P0088682 Nrg1 protein_coding protein_coding MGP_CASTEiJ_T0017703.1 MGP_CASTEiJ_G0015026.1 mouse_genomes_project 8 39376534 39384463 + B430010I23Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017704.1 MGP_CASTEiJ_G0015026.1 mouse_genomes_project 8 39376804 39379490 + B430010I23Rik processed_transcript processed_transcript MGP_CASTEiJ_T0008831.1 MGP_CASTEiJ_G0007119.1 mouse_genomes_project 8 7947514 7954278 - 3930402G23Rik lincRNA lincRNA MGP_CASTEiJ_T0005183.1 MGP_CASTEiJ_G0004405.1 mouse_genomes_project 8 622639 623787 - antisense antisense MGP_CASTEiJ_T0010646.1 MGP_CASTEiJ_G0008834.1 mouse_genomes_project 8 20643295 20643385 - Mir3107 miRNA miRNA MGP_CASTEiJ_T0088069.1 MGP_CASTEiJ_G0032323.1 mouse_genomes_project 8 404788 424008 + MGP_CASTEiJ_P0088069 1700019B03Rik protein_coding protein_coding MGP_CASTEiJ_T0088070.1 MGP_CASTEiJ_G0032323.1 mouse_genomes_project 8 404788 424008 + MGP_CASTEiJ_P0088070 1700019B03Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088071.1 MGP_CASTEiJ_G0032323.1 mouse_genomes_project 8 410624 424011 + MGP_CASTEiJ_P0088071 1700019B03Rik protein_coding protein_coding MGP_CASTEiJ_T0089411.1 MGP_CASTEiJ_G0032751.1 mouse_genomes_project 8 70751722 70783979 - MGP_CASTEiJ_P0089411 Haus8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089412.1 MGP_CASTEiJ_G0032751.1 mouse_genomes_project 8 70756340 70783895 - MGP_CASTEiJ_P0089412 Haus8 protein_coding protein_coding MGP_CASTEiJ_T0089413.1 MGP_CASTEiJ_G0032751.1 mouse_genomes_project 8 70756340 70784452 - MGP_CASTEiJ_P0089413 Haus8 protein_coding protein_coding MGP_CASTEiJ_T0089414.1 MGP_CASTEiJ_G0032751.1 mouse_genomes_project 8 70760611 70783979 - Haus8 protein_coding processed_transcript MGP_CASTEiJ_T0089415.1 MGP_CASTEiJ_G0032751.1 mouse_genomes_project 8 70761206 70761821 - Haus8 protein_coding retained_intron MGP_CASTEiJ_T0089416.1 MGP_CASTEiJ_G0032751.1 mouse_genomes_project 8 70761233 70783997 - Haus8 protein_coding processed_transcript MGP_CASTEiJ_T0089417.1 MGP_CASTEiJ_G0032751.1 mouse_genomes_project 8 70762205 70783961 - Haus8 protein_coding retained_intron MGP_CASTEiJ_T0089418.1 MGP_CASTEiJ_G0032751.1 mouse_genomes_project 8 70768376 70783877 - Haus8 protein_coding processed_transcript MGP_CASTEiJ_T0089919.1 MGP_CASTEiJ_G0032901.1 mouse_genomes_project 8 85040758 85055763 + MGP_CASTEiJ_P0089919 Hook2 protein_coding protein_coding MGP_CASTEiJ_T0002271.1 MGP_CASTEiJ_G0002189.1 mouse_genomes_project 8 123670314 123670982 + TEC TEC MGP_CASTEiJ_T0008934.1 MGP_CASTEiJ_G0007194.1 mouse_genomes_project 8 100122282 100130244 + lincRNA lincRNA MGP_CASTEiJ_T0008935.1 MGP_CASTEiJ_G0007194.1 mouse_genomes_project 8 100122314 100528771 + lincRNA lincRNA MGP_CASTEiJ_T0090307.1 MGP_CASTEiJ_G0033032.1 mouse_genomes_project 8 105989154 106003357 + MGP_CASTEiJ_P0090307 Ces2b protein_coding protein_coding MGP_CASTEiJ_T0090308.1 MGP_CASTEiJ_G0033032.1 mouse_genomes_project 8 105989183 106043302 + MGP_CASTEiJ_P0090308 Ces2b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0005260.1 MGP_CASTEiJ_G0004468.1 mouse_genomes_project 8 124541643 124542615 - Gm27011 antisense antisense MGP_CASTEiJ_T0088987.1 MGP_CASTEiJ_G0032623.1 mouse_genomes_project 8 52700882 52753422 - MGP_CASTEiJ_P0088987 Neil3 protein_coding protein_coding MGP_CASTEiJ_T0088988.1 MGP_CASTEiJ_G0032623.1 mouse_genomes_project 8 52719583 52726386 - Neil3 protein_coding processed_transcript MGP_CASTEiJ_T0088989.1 MGP_CASTEiJ_G0032623.1 mouse_genomes_project 8 52719583 52726440 - MGP_CASTEiJ_P0088989 Neil3 protein_coding protein_coding MGP_CASTEiJ_T0088990.1 MGP_CASTEiJ_G0032623.1 mouse_genomes_project 8 52719609 52727528 - MGP_CASTEiJ_P0088990 Neil3 protein_coding protein_coding MGP_CASTEiJ_T0088991.1 MGP_CASTEiJ_G0032623.1 mouse_genomes_project 8 52720253 52753323 - Neil3 protein_coding retained_intron MGP_CASTEiJ_T0088992.1 MGP_CASTEiJ_G0032623.1 mouse_genomes_project 8 52724457 52753035 - MGP_CASTEiJ_P0088992 Neil3 protein_coding protein_coding MGP_CASTEiJ_T0089814.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84702450 84709781 + Trmt1 protein_coding retained_intron MGP_CASTEiJ_T0089815.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84702462 84704681 + Trmt1 protein_coding processed_transcript MGP_CASTEiJ_T0089816.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84702482 84710167 + MGP_CASTEiJ_P0089816 Trmt1 protein_coding protein_coding MGP_CASTEiJ_T0089817.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84707703 84720797 + MGP_CASTEiJ_P0089817 Trmt1 protein_coding protein_coding MGP_CASTEiJ_T0089818.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708084 84720776 + MGP_CASTEiJ_P0089818 Trmt1 protein_coding protein_coding MGP_CASTEiJ_T0089819.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708094 84710215 + Trmt1 protein_coding retained_intron MGP_CASTEiJ_T0089820.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708094 84709584 + Trmt1 protein_coding processed_transcript MGP_CASTEiJ_T0089821.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708094 84716517 + MGP_CASTEiJ_P0089821 Trmt1 protein_coding protein_coding MGP_CASTEiJ_T0089822.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708101 84720775 + MGP_CASTEiJ_P0089822 Trmt1 protein_coding protein_coding MGP_CASTEiJ_T0089823.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708106 84717904 + MGP_CASTEiJ_P0089823 Trmt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089824.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708109 84716288 + MGP_CASTEiJ_P0089824 Trmt1 protein_coding protein_coding MGP_CASTEiJ_T0089825.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708120 84720797 + Trmt1 protein_coding retained_intron MGP_CASTEiJ_T0089826.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708120 84710073 + Trmt1 protein_coding retained_intron MGP_CASTEiJ_T0089827.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708121 84709656 + Trmt1 protein_coding retained_intron MGP_CASTEiJ_T0089828.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708122 84708816 + Trmt1 protein_coding retained_intron MGP_CASTEiJ_T0089829.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708123 84709653 + Trmt1 protein_coding processed_transcript MGP_CASTEiJ_T0089830.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708123 84716436 + MGP_CASTEiJ_P0089830 Trmt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089831.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708123 84716460 + MGP_CASTEiJ_P0089831 Trmt1 protein_coding protein_coding MGP_CASTEiJ_T0089832.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708126 84712727 + Trmt1 protein_coding processed_transcript MGP_CASTEiJ_T0089833.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708305 84720784 + MGP_CASTEiJ_P0089833 Trmt1 protein_coding protein_coding MGP_CASTEiJ_T0089834.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708318 84716226 + MGP_CASTEiJ_P0089834 Trmt1 protein_coding protein_coding MGP_CASTEiJ_T0089835.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84708473 84716517 + Trmt1 protein_coding processed_transcript MGP_CASTEiJ_T0089836.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84709232 84718111 + Trmt1 protein_coding processed_transcript MGP_CASTEiJ_T0089837.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84715908 84718415 + Trmt1 protein_coding retained_intron MGP_CASTEiJ_T0089838.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84717822 84718500 + Trmt1 protein_coding retained_intron MGP_CASTEiJ_T0089839.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84717953 84719241 + MGP_CASTEiJ_P0089839 Trmt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089840.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84718300 84718934 + Trmt1 protein_coding retained_intron MGP_CASTEiJ_T0089841.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84719377 84720775 + MGP_CASTEiJ_P0089841 Trmt1 protein_coding protein_coding MGP_CASTEiJ_T0089842.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84720059 84720775 + Trmt1 protein_coding retained_intron MGP_CASTEiJ_T0089843.1 MGP_CASTEiJ_G0032882.1 mouse_genomes_project 8 84720169 84720640 + Trmt1 protein_coding retained_intron MGP_CASTEiJ_T0089045.1 MGP_CASTEiJ_G0032642.1 mouse_genomes_project 8 59561031 59605000 + MGP_CASTEiJ_P0089045 Aadat protein_coding protein_coding MGP_CASTEiJ_T0089046.1 MGP_CASTEiJ_G0032642.1 mouse_genomes_project 8 59561120 59604890 + MGP_CASTEiJ_P0089046 Aadat protein_coding unknown_likely_coding MGP_CASTEiJ_T0090836.1 MGP_CASTEiJ_G0033216.1 mouse_genomes_project 8 123130342 123144345 - MGP_CASTEiJ_P0090836 Emc8 protein_coding protein_coding MGP_CASTEiJ_T0090837.1 MGP_CASTEiJ_G0033216.1 mouse_genomes_project 8 123132386 123144379 - Emc8 protein_coding retained_intron MGP_CASTEiJ_T0090838.1 MGP_CASTEiJ_G0033216.1 mouse_genomes_project 8 123134250 123146578 - MGP_CASTEiJ_P0090838 Emc8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090839.1 MGP_CASTEiJ_G0033216.1 mouse_genomes_project 8 123134423 123144130 - MGP_CASTEiJ_P0090839 Emc8 protein_coding protein_coding MGP_CASTEiJ_T0090840.1 MGP_CASTEiJ_G0033216.1 mouse_genomes_project 8 123134449 123144203 - MGP_CASTEiJ_P0090840 Emc8 protein_coding protein_coding MGP_CASTEiJ_T0090841.1 MGP_CASTEiJ_G0033216.1 mouse_genomes_project 8 123136376 123144370 - MGP_CASTEiJ_P0090841 Emc8 protein_coding protein_coding MGP_CASTEiJ_T0090842.1 MGP_CASTEiJ_G0033216.1 mouse_genomes_project 8 123137049 123146123 - Emc8 protein_coding retained_intron MGP_CASTEiJ_T0008912.1 MGP_CASTEiJ_G0007182.1 mouse_genomes_project 8 88143906 88218358 - lincRNA lincRNA MGP_CASTEiJ_T0088443.1 MGP_CASTEiJ_G0032446.1 mouse_genomes_project 8 19119750 19120865 - MGP_CASTEiJ_P0088443 protein_coding protein_coding MGP_CASTEiJ_T0005216.1 MGP_CASTEiJ_G0004430.1 mouse_genomes_project 8 45671762 45683045 - 4930579M01Rik antisense antisense MGP_CASTEiJ_T0088769.1 MGP_CASTEiJ_G0032565.1 mouse_genomes_project 8 37876353 37947662 - MGP_CASTEiJ_P0088769 Msr1 protein_coding protein_coding MGP_CASTEiJ_T0088770.1 MGP_CASTEiJ_G0032565.1 mouse_genomes_project 8 37900585 37947662 - MGP_CASTEiJ_P0088770 Msr1 protein_coding protein_coding MGP_CASTEiJ_T0089668.1 MGP_CASTEiJ_G0032831.1 mouse_genomes_project 8 79480276 79546311 + MGP_CASTEiJ_P0089668 Anapc10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0089693.1 MGP_CASTEiJ_G0032839.1 mouse_genomes_project 8 82244024 82318725 - MGP_CASTEiJ_P0089693 Il15 protein_coding protein_coding MGP_CASTEiJ_T0088437.1 MGP_CASTEiJ_G0032440.1 mouse_genomes_project 8 18343600 18348666 - MGP_CASTEiJ_P0088437 Gm6040 protein_coding protein_coding MGP_CASTEiJ_T0015353.1 MGP_CASTEiJ_G0013516.1 mouse_genomes_project 8 18315291 18318877 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088748.1 MGP_CASTEiJ_G0032559.1 mouse_genomes_project 8 34603333 34665769 + MGP_CASTEiJ_P0088748 6430573F11Rik protein_coding protein_coding MGP_CASTEiJ_T0088749.1 MGP_CASTEiJ_G0032559.1 mouse_genomes_project 8 34603359 34667120 + MGP_CASTEiJ_P0088749 6430573F11Rik protein_coding protein_coding MGP_CASTEiJ_T0088750.1 MGP_CASTEiJ_G0032559.1 mouse_genomes_project 8 34603968 34664403 + MGP_CASTEiJ_P0088750 6430573F11Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088751.1 MGP_CASTEiJ_G0032559.1 mouse_genomes_project 8 34641242 34665810 + MGP_CASTEiJ_P0088751 6430573F11Rik protein_coding protein_coding MGP_CASTEiJ_T0088752.1 MGP_CASTEiJ_G0032559.1 mouse_genomes_project 8 34658374 34665405 + 6430573F11Rik protein_coding processed_transcript MGP_CASTEiJ_T0101330.1 MGP_CASTEiJ_G0038243.1 mouse_genomes_project 8 89891880 89892012 - Gm24212 snoRNA snoRNA MGP_CASTEiJ_T0098666.1 MGP_CASTEiJ_G0035597.1 mouse_genomes_project 8 117016243 117016343 - Gm22556 rRNA rRNA MGP_CASTEiJ_T0089902.1 MGP_CASTEiJ_G0032898.1 mouse_genomes_project 8 85007098 85015311 - MGP_CASTEiJ_P0089902 Rnaseh2a protein_coding protein_coding MGP_CASTEiJ_T0089903.1 MGP_CASTEiJ_G0032898.1 mouse_genomes_project 8 85007098 85015334 - MGP_CASTEiJ_P0089903 Rnaseh2a protein_coding protein_coding MGP_CASTEiJ_T0089904.1 MGP_CASTEiJ_G0032898.1 mouse_genomes_project 8 85007109 85007548 - Rnaseh2a protein_coding retained_intron MGP_CASTEiJ_T0089905.1 MGP_CASTEiJ_G0032898.1 mouse_genomes_project 8 85007154 85018793 - MGP_CASTEiJ_P0089905 Rnaseh2a protein_coding unknown_likely_coding MGP_CASTEiJ_T0089906.1 MGP_CASTEiJ_G0032898.1 mouse_genomes_project 8 85007405 85015231 - Rnaseh2a protein_coding retained_intron MGP_CASTEiJ_T0089907.1 MGP_CASTEiJ_G0032898.1 mouse_genomes_project 8 85014876 85019041 - MGP_CASTEiJ_P0089907 Rnaseh2a protein_coding protein_coding MGP_CASTEiJ_T0089908.1 MGP_CASTEiJ_G0032898.1 mouse_genomes_project 8 85015221 85016142 - MGP_CASTEiJ_P0089908 Rnaseh2a protein_coding protein_coding MGP_CASTEiJ_T0089909.1 MGP_CASTEiJ_G0032898.1 mouse_genomes_project 8 85015498 85018855 - Rnaseh2a protein_coding processed_transcript MGP_CASTEiJ_T0090428.1 MGP_CASTEiJ_G0033081.1 mouse_genomes_project 8 107199607 107205158 - MGP_CASTEiJ_P0090428 Lcat protein_coding protein_coding MGP_CASTEiJ_T0089883.1 MGP_CASTEiJ_G0032895.1 mouse_genomes_project 8 84953128 84956042 + MGP_CASTEiJ_P0089883 Dnase2a protein_coding protein_coding MGP_CASTEiJ_T0089884.1 MGP_CASTEiJ_G0032895.1 mouse_genomes_project 8 84953128 84956281 + MGP_CASTEiJ_P0089884 Dnase2a protein_coding protein_coding MGP_CASTEiJ_T0089885.1 MGP_CASTEiJ_G0032895.1 mouse_genomes_project 8 84953215 84953768 + Dnase2a protein_coding retained_intron MGP_CASTEiJ_T0089886.1 MGP_CASTEiJ_G0032895.1 mouse_genomes_project 8 84953215 84954036 + Dnase2a protein_coding retained_intron MGP_CASTEiJ_T0089887.1 MGP_CASTEiJ_G0032895.1 mouse_genomes_project 8 84953258 84954493 + MGP_CASTEiJ_P0089887 Dnase2a protein_coding protein_coding MGP_CASTEiJ_T0089888.1 MGP_CASTEiJ_G0032895.1 mouse_genomes_project 8 84953289 84959021 + Dnase2a protein_coding processed_transcript MGP_CASTEiJ_T0089889.1 MGP_CASTEiJ_G0032895.1 mouse_genomes_project 8 84953299 84954532 + MGP_CASTEiJ_P0089889 Dnase2a protein_coding protein_coding MGP_CASTEiJ_T0089890.1 MGP_CASTEiJ_G0032895.1 mouse_genomes_project 8 84954402 84956034 + Dnase2a protein_coding processed_transcript MGP_CASTEiJ_T0089894.1 MGP_CASTEiJ_G0032895.1 mouse_genomes_project 8 84957963 84967405 + Dnase2a protein_coding processed_transcript MGP_CASTEiJ_T0005245.1 MGP_CASTEiJ_G0004455.1 mouse_genomes_project 8 111390998 111399444 - Gm17344 antisense antisense MGP_CASTEiJ_T0005246.1 MGP_CASTEiJ_G0004455.1 mouse_genomes_project 8 111392740 111399467 - Gm17344 antisense antisense MGP_CASTEiJ_T0015385.1 MGP_CASTEiJ_G0013548.1 mouse_genomes_project 8 78593171 78593638 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008938.1 MGP_CASTEiJ_G0007197.1 mouse_genomes_project 8 106847539 106863192 - Gm5914 lincRNA lincRNA MGP_CASTEiJ_T0008939.1 MGP_CASTEiJ_G0007197.1 mouse_genomes_project 8 106847553 106863327 - Gm5914 lincRNA lincRNA MGP_CASTEiJ_T0002267.1 MGP_CASTEiJ_G0002185.1 mouse_genomes_project 8 110346577 110348283 + TEC TEC MGP_CASTEiJ_T0090460.1 MGP_CASTEiJ_G0033092.1 mouse_genomes_project 8 107497114 107544681 + MGP_CASTEiJ_P0090460 Prmt7 protein_coding protein_coding MGP_CASTEiJ_T0090461.1 MGP_CASTEiJ_G0033092.1 mouse_genomes_project 8 107497201 107522697 + MGP_CASTEiJ_P0090461 Prmt7 protein_coding protein_coding MGP_CASTEiJ_T0090462.1 MGP_CASTEiJ_G0033092.1 mouse_genomes_project 8 107497215 107530539 + Prmt7 protein_coding retained_intron MGP_CASTEiJ_T0090463.1 MGP_CASTEiJ_G0033092.1 mouse_genomes_project 8 107497396 107513507 + MGP_CASTEiJ_P0090463 Prmt7 protein_coding protein_coding MGP_CASTEiJ_T0090464.1 MGP_CASTEiJ_G0033092.1 mouse_genomes_project 8 107498705 107525347 + MGP_CASTEiJ_P0090464 Prmt7 protein_coding protein_coding MGP_CASTEiJ_T0090465.1 MGP_CASTEiJ_G0033092.1 mouse_genomes_project 8 107521832 107524682 + Prmt7 protein_coding processed_transcript MGP_CASTEiJ_T0090466.1 MGP_CASTEiJ_G0033092.1 mouse_genomes_project 8 107525048 107532076 + Prmt7 protein_coding processed_transcript MGP_CASTEiJ_T0088333.1 MGP_CASTEiJ_G0032399.1 mouse_genomes_project 8 10771054 10782780 - MGP_CASTEiJ_P0088333 1700029H14Rik protein_coding protein_coding MGP_CASTEiJ_T0088334.1 MGP_CASTEiJ_G0032399.1 mouse_genomes_project 8 10771054 10782767 - MGP_CASTEiJ_P0088334 1700029H14Rik protein_coding protein_coding MGP_CASTEiJ_T0088335.1 MGP_CASTEiJ_G0032399.1 mouse_genomes_project 8 10771355 10782724 - MGP_CASTEiJ_P0088335 1700029H14Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088336.1 MGP_CASTEiJ_G0032399.1 mouse_genomes_project 8 10771376 10782723 - MGP_CASTEiJ_P0088336 1700029H14Rik protein_coding protein_coding MGP_CASTEiJ_T0088337.1 MGP_CASTEiJ_G0032399.1 mouse_genomes_project 8 10776300 10782724 - MGP_CASTEiJ_P0088337 1700029H14Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090055.1 MGP_CASTEiJ_G0032946.1 mouse_genomes_project 8 91353055 91410884 + MGP_CASTEiJ_P0090055 Rbl2 protein_coding protein_coding MGP_CASTEiJ_T0090056.1 MGP_CASTEiJ_G0032946.1 mouse_genomes_project 8 91353092 91362962 + Rbl2 protein_coding retained_intron MGP_CASTEiJ_T0090057.1 MGP_CASTEiJ_G0032946.1 mouse_genomes_project 8 91391325 91402097 + Rbl2 protein_coding retained_intron MGP_CASTEiJ_T0090058.1 MGP_CASTEiJ_G0032946.1 mouse_genomes_project 8 91391362 91401046 + Rbl2 protein_coding processed_transcript MGP_CASTEiJ_T0090060.1 MGP_CASTEiJ_G0032946.1 mouse_genomes_project 8 91399243 91402833 + Rbl2 protein_coding retained_intron MGP_CASTEiJ_T0090061.1 MGP_CASTEiJ_G0032946.1 mouse_genomes_project 8 91400651 91402773 + Rbl2 protein_coding retained_intron MGP_CASTEiJ_T0090062.1 MGP_CASTEiJ_G0032946.1 mouse_genomes_project 8 91402121 91403095 + Rbl2 protein_coding retained_intron MGP_CASTEiJ_T0090345.1 MGP_CASTEiJ_G0033045.1 mouse_genomes_project 8 106476552 106482450 + MGP_CASTEiJ_P0090345 Hsf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090346.1 MGP_CASTEiJ_G0033045.1 mouse_genomes_project 8 106476580 106482617 + MGP_CASTEiJ_P0090346 Hsf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090347.1 MGP_CASTEiJ_G0033045.1 mouse_genomes_project 8 106476625 106482422 + MGP_CASTEiJ_P0090347 Hsf4 protein_coding protein_coding MGP_CASTEiJ_T0090348.1 MGP_CASTEiJ_G0033045.1 mouse_genomes_project 8 106476625 106482422 + MGP_CASTEiJ_P0090348 Hsf4 protein_coding protein_coding MGP_CASTEiJ_T0090349.1 MGP_CASTEiJ_G0033045.1 mouse_genomes_project 8 106476625 106482619 + MGP_CASTEiJ_P0090349 Hsf4 protein_coding protein_coding MGP_CASTEiJ_T0090468.1 MGP_CASTEiJ_G0033094.1 mouse_genomes_project 8 107714349 107724908 + MGP_CASTEiJ_P0090468 Zfp90 protein_coding protein_coding MGP_CASTEiJ_T0088884.1 MGP_CASTEiJ_G0032593.1 mouse_genomes_project 8 44506828 44516342 + MGP_CASTEiJ_P0088884 Ccdc110 protein_coding protein_coding MGP_CASTEiJ_T0088885.1 MGP_CASTEiJ_G0032593.1 mouse_genomes_project 8 44506901 44513721 + MGP_CASTEiJ_P0088885 Ccdc110 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088568.1 MGP_CASTEiJ_G0032495.1 mouse_genomes_project 8 22590242 22658907 - MGP_CASTEiJ_P0088568 Plekha2 protein_coding protein_coding MGP_CASTEiJ_T0088569.1 MGP_CASTEiJ_G0032495.1 mouse_genomes_project 8 22591927 22658700 - MGP_CASTEiJ_P0088569 Plekha2 protein_coding protein_coding MGP_CASTEiJ_T0088570.1 MGP_CASTEiJ_G0032495.1 mouse_genomes_project 8 22594048 22658487 - MGP_CASTEiJ_P0088570 Plekha2 protein_coding protein_coding MGP_CASTEiJ_T0088571.1 MGP_CASTEiJ_G0032495.1 mouse_genomes_project 8 22614937 22647064 - MGP_CASTEiJ_P0088571 Plekha2 protein_coding protein_coding MGP_CASTEiJ_T0088556.1 MGP_CASTEiJ_G0032491.1 mouse_genomes_project 8 22369354 22495674 - MGP_CASTEiJ_P0088556 Adam32 protein_coding protein_coding MGP_CASTEiJ_T0088557.1 MGP_CASTEiJ_G0032491.1 mouse_genomes_project 8 22369357 22393377 - Adam32 protein_coding retained_intron MGP_CASTEiJ_T0088558.1 MGP_CASTEiJ_G0032491.1 mouse_genomes_project 8 22369357 22404128 - MGP_CASTEiJ_P0088558 Adam32 protein_coding protein_coding MGP_CASTEiJ_T0088559.1 MGP_CASTEiJ_G0032491.1 mouse_genomes_project 8 22369360 22495665 - MGP_CASTEiJ_P0088559 Adam32 protein_coding protein_coding MGP_CASTEiJ_T0088560.1 MGP_CASTEiJ_G0032491.1 mouse_genomes_project 8 22369360 22418347 - MGP_CASTEiJ_P0088560 Adam32 protein_coding protein_coding MGP_CASTEiJ_T0088561.1 MGP_CASTEiJ_G0032491.1 mouse_genomes_project 8 22369419 22392256 - MGP_CASTEiJ_P0088561 Adam32 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088562.1 MGP_CASTEiJ_G0032491.1 mouse_genomes_project 8 22449806 22495651 - MGP_CASTEiJ_P0088562 Adam32 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088563.1 MGP_CASTEiJ_G0032491.1 mouse_genomes_project 8 22461210 22495674 - Adam32 protein_coding retained_intron MGP_CASTEiJ_T0089257.1 MGP_CASTEiJ_G0032706.1 mouse_genomes_project 8 69578776 69586481 + MGP_CASTEiJ_P0089257 protein_coding protein_coding MGP_CASTEiJ_T0089258.1 MGP_CASTEiJ_G0032706.1 mouse_genomes_project 8 69578984 69584760 + protein_coding retained_intron MGP_CASTEiJ_T0089259.1 MGP_CASTEiJ_G0032706.1 mouse_genomes_project 8 69578988 69604869 + MGP_CASTEiJ_P0089259 protein_coding protein_coding MGP_CASTEiJ_T0089260.1 MGP_CASTEiJ_G0032706.1 mouse_genomes_project 8 69578990 69584774 + MGP_CASTEiJ_P0089260 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089261.1 MGP_CASTEiJ_G0032706.1 mouse_genomes_project 8 69579000 69586486 + MGP_CASTEiJ_P0089261 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089262.1 MGP_CASTEiJ_G0032706.1 mouse_genomes_project 8 69579554 69586544 + MGP_CASTEiJ_P0089262 protein_coding protein_coding MGP_CASTEiJ_T0008929.1 MGP_CASTEiJ_G0007191.1 mouse_genomes_project 8 94198561 94264398 - Gm26843 lincRNA lincRNA MGP_CASTEiJ_T0090414.1 MGP_CASTEiJ_G0033075.1 mouse_genomes_project 8 107113416 107136792 + MGP_CASTEiJ_P0090414 protein_coding protein_coding MGP_CASTEiJ_T0090415.1 MGP_CASTEiJ_G0033075.1 mouse_genomes_project 8 107113435 107136800 + MGP_CASTEiJ_P0090415 protein_coding unknown_likely_coding MGP_CASTEiJ_T0008882.1 MGP_CASTEiJ_G0007160.1 mouse_genomes_project 8 77265555 77270098 + 1700092C02Rik lincRNA lincRNA MGP_CASTEiJ_T0088153.1 MGP_CASTEiJ_G0032347.1 mouse_genomes_project 8 1102312 1111435 + MGP_CASTEiJ_P0088153 protein_coding protein_coding MGP_CASTEiJ_T0088154.1 MGP_CASTEiJ_G0032347.1 mouse_genomes_project 8 1102380 1111435 + MGP_CASTEiJ_P0088154 protein_coding protein_coding MGP_CASTEiJ_T0088155.1 MGP_CASTEiJ_G0032347.1 mouse_genomes_project 8 1102380 1111435 + MGP_CASTEiJ_P0088155 protein_coding protein_coding MGP_CASTEiJ_T0088156.1 MGP_CASTEiJ_G0032347.1 mouse_genomes_project 8 1102416 1114964 + MGP_CASTEiJ_P0088156 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088157.1 MGP_CASTEiJ_G0032347.1 mouse_genomes_project 8 1102461 1109374 + MGP_CASTEiJ_P0088157 protein_coding protein_coding MGP_CASTEiJ_T0088158.1 MGP_CASTEiJ_G0032347.1 mouse_genomes_project 8 1103655 1111435 + MGP_CASTEiJ_P0088158 protein_coding protein_coding MGP_CASTEiJ_T0088159.1 MGP_CASTEiJ_G0032347.1 mouse_genomes_project 8 1106808 1109386 + MGP_CASTEiJ_P0088159 protein_coding protein_coding MGP_CASTEiJ_T0088160.1 MGP_CASTEiJ_G0032347.1 mouse_genomes_project 8 1108001 1109722 + protein_coding processed_transcript MGP_CASTEiJ_T0088161.1 MGP_CASTEiJ_G0032347.1 mouse_genomes_project 8 1108181 1109845 + protein_coding retained_intron MGP_CASTEiJ_T0089988.1 MGP_CASTEiJ_G0032924.1 mouse_genomes_project 8 86520953 86621551 - MGP_CASTEiJ_P0089988 Abcc12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089989.1 MGP_CASTEiJ_G0032924.1 mouse_genomes_project 8 86546045 86621582 - MGP_CASTEiJ_P0089989 Abcc12 protein_coding protein_coding MGP_CASTEiJ_T0089990.1 MGP_CASTEiJ_G0032924.1 mouse_genomes_project 8 86546049 86578146 - MGP_CASTEiJ_P0089990 Abcc12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089991.1 MGP_CASTEiJ_G0032924.1 mouse_genomes_project 8 86546309 86613742 - MGP_CASTEiJ_P0089991 Abcc12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089992.1 MGP_CASTEiJ_G0032924.1 mouse_genomes_project 8 86546309 86613742 - MGP_CASTEiJ_P0089992 Abcc12 protein_coding protein_coding MGP_CASTEiJ_T0089993.1 MGP_CASTEiJ_G0032924.1 mouse_genomes_project 8 86546309 86613742 - MGP_CASTEiJ_P0089993 Abcc12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089994.1 MGP_CASTEiJ_G0032924.1 mouse_genomes_project 8 86577359 86621582 - MGP_CASTEiJ_P0089994 Abcc12 protein_coding protein_coding MGP_CASTEiJ_T0091000.1 MGP_CASTEiJ_G0033253.1 mouse_genomes_project 8 125766346 125769251 + MGP_CASTEiJ_P0091000 Rpl13 protein_coding protein_coding MGP_CASTEiJ_T0091001.1 MGP_CASTEiJ_G0033253.1 mouse_genomes_project 8 125766647 125767638 + Rpl13 protein_coding retained_intron MGP_CASTEiJ_T0091002.1 MGP_CASTEiJ_G0033253.1 mouse_genomes_project 8 125766649 125768463 + Rpl13 protein_coding retained_intron MGP_CASTEiJ_T0091003.1 MGP_CASTEiJ_G0033253.1 mouse_genomes_project 8 125766649 125769251 + Rpl13 protein_coding retained_intron MGP_CASTEiJ_T0091149.1 MGP_CASTEiJ_G0033299.1 mouse_genomes_project 8 128492661 128510139 + Ntpcr protein_coding processed_transcript MGP_CASTEiJ_T0091150.1 MGP_CASTEiJ_G0033299.1 mouse_genomes_project 8 128492726 128512644 + MGP_CASTEiJ_P0091150 Ntpcr protein_coding protein_coding MGP_CASTEiJ_T0091151.1 MGP_CASTEiJ_G0033299.1 mouse_genomes_project 8 128492730 128502951 + Ntpcr protein_coding processed_transcript MGP_CASTEiJ_T0091152.1 MGP_CASTEiJ_G0033299.1 mouse_genomes_project 8 128495816 128512869 + Ntpcr protein_coding processed_transcript MGP_CASTEiJ_T0091153.1 MGP_CASTEiJ_G0033299.1 mouse_genomes_project 8 128496918 128513056 + MGP_CASTEiJ_P0091153 Ntpcr protein_coding protein_coding MGP_CASTEiJ_T0091154.1 MGP_CASTEiJ_G0033299.1 mouse_genomes_project 8 128496948 128501134 + Ntpcr protein_coding retained_intron MGP_CASTEiJ_T0091155.1 MGP_CASTEiJ_G0033299.1 mouse_genomes_project 8 128496953 128503994 + MGP_CASTEiJ_P0091155 Ntpcr protein_coding protein_coding MGP_CASTEiJ_T0091156.1 MGP_CASTEiJ_G0033299.1 mouse_genomes_project 8 128500639 128512832 + MGP_CASTEiJ_P0091156 Ntpcr protein_coding protein_coding MGP_CASTEiJ_T0008875.1 MGP_CASTEiJ_G0007154.1 mouse_genomes_project 8 67539674 67547397 - lincRNA lincRNA MGP_CASTEiJ_T0101293.1 MGP_CASTEiJ_G0038206.1 mouse_genomes_project 8 16019823 16019952 - Gm25763 snoRNA snoRNA MGP_CASTEiJ_T0088539.1 MGP_CASTEiJ_G0032488.1 mouse_genomes_project 8 22144975 22211191 - MGP_CASTEiJ_P0088539 Adam18 protein_coding protein_coding MGP_CASTEiJ_T0088540.1 MGP_CASTEiJ_G0032488.1 mouse_genomes_project 8 22144975 22211191 - MGP_CASTEiJ_P0088540 Adam18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088541.1 MGP_CASTEiJ_G0032488.1 mouse_genomes_project 8 22144979 22168398 - Adam18 protein_coding processed_transcript MGP_CASTEiJ_T0091056.1 MGP_CASTEiJ_G0033266.1 mouse_genomes_project 8 126099364 126102959 + MGP_CASTEiJ_P0091056 Mc1r protein_coding protein_coding MGP_CASTEiJ_T0101335.1 MGP_CASTEiJ_G0038248.1 mouse_genomes_project 8 96881050 96881182 - Gm22780 snoRNA snoRNA MGP_CASTEiJ_T0089707.1 MGP_CASTEiJ_G0032846.1 mouse_genomes_project 8 83275225 83310108 + MGP_CASTEiJ_P0089707 Mgat4d protein_coding protein_coding MGP_CASTEiJ_T0089708.1 MGP_CASTEiJ_G0032846.1 mouse_genomes_project 8 83286650 83313268 + Mgat4d protein_coding processed_transcript MGP_CASTEiJ_T0090641.1 MGP_CASTEiJ_G0033151.1 mouse_genomes_project 8 113033649 113054971 - Fa2h protein_coding processed_transcript MGP_CASTEiJ_T0090642.1 MGP_CASTEiJ_G0033151.1 mouse_genomes_project 8 113033655 113087091 - MGP_CASTEiJ_P0090642 Fa2h protein_coding protein_coding MGP_CASTEiJ_T0090643.1 MGP_CASTEiJ_G0033151.1 mouse_genomes_project 8 113034279 113036572 - Fa2h protein_coding processed_transcript MGP_CASTEiJ_T0090644.1 MGP_CASTEiJ_G0033151.1 mouse_genomes_project 8 113035984 113087085 - Fa2h protein_coding retained_intron MGP_CASTEiJ_T0090094.1 MGP_CASTEiJ_G0032959.1 mouse_genomes_project 8 93496343 93562819 - protein_coding retained_intron MGP_CASTEiJ_T0090095.1 MGP_CASTEiJ_G0032959.1 mouse_genomes_project 8 93532651 93562794 - MGP_CASTEiJ_P0090095 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090096.1 MGP_CASTEiJ_G0032959.1 mouse_genomes_project 8 93532720 93562794 - MGP_CASTEiJ_P0090096 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090097.1 MGP_CASTEiJ_G0032959.1 mouse_genomes_project 8 93547897 93556160 - MGP_CASTEiJ_P0090097 protein_coding protein_coding MGP_CASTEiJ_T0088524.1 MGP_CASTEiJ_G0032482.1 mouse_genomes_project 8 20915966 20955864 + MGP_CASTEiJ_P0088524 Sfrp1 protein_coding protein_coding MGP_CASTEiJ_T0088525.1 MGP_CASTEiJ_G0032482.1 mouse_genomes_project 8 20916173 20986855 + MGP_CASTEiJ_P0088525 Sfrp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0089402.1 MGP_CASTEiJ_G0032744.1 mouse_genomes_project 8 70325576 70344021 - MGP_CASTEiJ_P0089402 Kcnn1 protein_coding protein_coding MGP_CASTEiJ_T0089403.1 MGP_CASTEiJ_G0032744.1 mouse_genomes_project 8 70325576 70344021 - MGP_CASTEiJ_P0089403 Kcnn1 protein_coding protein_coding MGP_CASTEiJ_T0089404.1 MGP_CASTEiJ_G0032744.1 mouse_genomes_project 8 70326698 70343970 - MGP_CASTEiJ_P0089404 Kcnn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0010663.1 MGP_CASTEiJ_G0008851.1 mouse_genomes_project 8 71187221 71187281 - Mir6769b miRNA miRNA MGP_CASTEiJ_T0008837.1 MGP_CASTEiJ_G0007124.1 mouse_genomes_project 8 9875896 9888272 - Gm15348 lincRNA lincRNA MGP_CASTEiJ_T0089339.1 MGP_CASTEiJ_G0032720.1 mouse_genomes_project 8 69940904 69944381 - MGP_CASTEiJ_P0089339 Tmem59l protein_coding protein_coding MGP_CASTEiJ_T0090849.1 MGP_CASTEiJ_G0033218.1 mouse_genomes_project 8 123223584 123243898 + MGP_CASTEiJ_P0090849 Irf8 protein_coding protein_coding MGP_CASTEiJ_T0090850.1 MGP_CASTEiJ_G0033218.1 mouse_genomes_project 8 123223585 123230450 + Irf8 protein_coding retained_intron MGP_CASTEiJ_T0090851.1 MGP_CASTEiJ_G0033218.1 mouse_genomes_project 8 123223590 123242586 + MGP_CASTEiJ_P0090851 Irf8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090852.1 MGP_CASTEiJ_G0033218.1 mouse_genomes_project 8 123223611 123240666 + MGP_CASTEiJ_P0090852 Irf8 protein_coding protein_coding MGP_CASTEiJ_T0090853.1 MGP_CASTEiJ_G0033218.1 mouse_genomes_project 8 123225862 123242769 + MGP_CASTEiJ_P0090853 Irf8 protein_coding protein_coding MGP_CASTEiJ_T0090855.1 MGP_CASTEiJ_G0033218.1 mouse_genomes_project 8 123232615 123240921 + Irf8 protein_coding retained_intron MGP_CASTEiJ_T0090856.1 MGP_CASTEiJ_G0033218.1 mouse_genomes_project 8 123239357 123240899 + Irf8 protein_coding processed_transcript MGP_CASTEiJ_T0011387.1 MGP_CASTEiJ_G0009575.1 mouse_genomes_project 8 64185276 64185367 + Gm26210 misc_RNA misc_RNA MGP_CASTEiJ_T0088353.1 MGP_CASTEiJ_G0032405.1 mouse_genomes_project 8 11148232 11153750 - MGP_CASTEiJ_P0088353 Coprs protein_coding protein_coding MGP_CASTEiJ_T0015391.1 MGP_CASTEiJ_G0013554.1 mouse_genomes_project 8 81723054 81724673 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088087.1 MGP_CASTEiJ_G0032329.1 mouse_genomes_project 8 558943 571596 - Xab2 protein_coding retained_intron MGP_CASTEiJ_T0088088.1 MGP_CASTEiJ_G0032329.1 mouse_genomes_project 8 560609 571607 - MGP_CASTEiJ_P0088088 Xab2 protein_coding protein_coding MGP_CASTEiJ_T0088089.1 MGP_CASTEiJ_G0032329.1 mouse_genomes_project 8 560612 571593 - Xab2 protein_coding retained_intron MGP_CASTEiJ_T0088090.1 MGP_CASTEiJ_G0032329.1 mouse_genomes_project 8 564838 571561 - MGP_CASTEiJ_P0088090 Xab2 protein_coding protein_coding MGP_CASTEiJ_T0088091.1 MGP_CASTEiJ_G0032329.1 mouse_genomes_project 8 566514 571573 - MGP_CASTEiJ_P0088091 Xab2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0100063.1 MGP_CASTEiJ_G0036976.1 mouse_genomes_project 8 44868841 44868938 + Gm24669 snRNA snRNA MGP_CASTEiJ_T0090682.1 MGP_CASTEiJ_G0033166.1 mouse_genomes_project 8 114369221 114660513 + Cntnap4 protein_coding retained_intron MGP_CASTEiJ_T0090683.1 MGP_CASTEiJ_G0033166.1 mouse_genomes_project 8 114369221 114683725 + MGP_CASTEiJ_P0090683 Cntnap4 protein_coding protein_coding MGP_CASTEiJ_T0090684.1 MGP_CASTEiJ_G0033166.1 mouse_genomes_project 8 114369221 114683713 + MGP_CASTEiJ_P0090684 Cntnap4 protein_coding protein_coding MGP_CASTEiJ_T0090685.1 MGP_CASTEiJ_G0033166.1 mouse_genomes_project 8 114369233 114592977 + Cntnap4 protein_coding retained_intron MGP_CASTEiJ_T0090686.1 MGP_CASTEiJ_G0033166.1 mouse_genomes_project 8 114533093 114536920 + Cntnap4 protein_coding processed_transcript MGP_CASTEiJ_T0090687.1 MGP_CASTEiJ_G0033166.1 mouse_genomes_project 8 114580038 114597431 + Cntnap4 protein_coding processed_transcript MGP_CASTEiJ_T0015352.1 MGP_CASTEiJ_G0013515.1 mouse_genomes_project 8 18313995 18315082 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090209.1 MGP_CASTEiJ_G0032994.1 mouse_genomes_project 8 95556826 95584403 + MGP_CASTEiJ_P0090209 Adgrg3 protein_coding protein_coding MGP_CASTEiJ_T0017715.1 MGP_CASTEiJ_G0015031.1 mouse_genomes_project 8 56266307 56282468 - AV026068 processed_transcript lincRNA MGP_CASTEiJ_T0017716.1 MGP_CASTEiJ_G0015031.1 mouse_genomes_project 8 56266307 56282547 - AV026068 processed_transcript retained_intron MGP_CASTEiJ_T0017717.1 MGP_CASTEiJ_G0015031.1 mouse_genomes_project 8 56266307 56282878 - AV026068 processed_transcript lincRNA MGP_CASTEiJ_T0017718.1 MGP_CASTEiJ_G0015031.1 mouse_genomes_project 8 56266307 56283003 - AV026068 processed_transcript lincRNA MGP_CASTEiJ_T0017719.1 MGP_CASTEiJ_G0015031.1 mouse_genomes_project 8 56266313 56267428 - AV026068 processed_transcript lincRNA MGP_CASTEiJ_T0017720.1 MGP_CASTEiJ_G0015031.1 mouse_genomes_project 8 56267312 56282974 - AV026068 processed_transcript retained_intron MGP_CASTEiJ_T0017721.1 MGP_CASTEiJ_G0015031.1 mouse_genomes_project 8 56269027 56282910 - AV026068 processed_transcript retained_intron MGP_CASTEiJ_T0017722.1 MGP_CASTEiJ_G0015031.1 mouse_genomes_project 8 56276458 56282891 - AV026068 processed_transcript retained_intron MGP_CASTEiJ_T0088442.1 MGP_CASTEiJ_G0032445.1 mouse_genomes_project 8 19119735 19120860 - MGP_CASTEiJ_P0088442 protein_coding protein_coding MGP_CASTEiJ_T0005210.1 MGP_CASTEiJ_G0004424.1 mouse_genomes_project 8 31778425 31802492 + Gm26632 antisense antisense MGP_CASTEiJ_T0088612.1 MGP_CASTEiJ_G0032502.1 mouse_genomes_project 8 23379184 23394724 + MGP_CASTEiJ_P0088612 protein_coding protein_coding MGP_CASTEiJ_T0089923.1 MGP_CASTEiJ_G0032905.1 mouse_genomes_project 8 85090437 85112206 + MGP_CASTEiJ_P0089923 Tnpo2 protein_coding protein_coding MGP_CASTEiJ_T0089924.1 MGP_CASTEiJ_G0032905.1 mouse_genomes_project 8 85090690 85112206 + MGP_CASTEiJ_P0089924 Tnpo2 protein_coding protein_coding MGP_CASTEiJ_T0089925.1 MGP_CASTEiJ_G0032905.1 mouse_genomes_project 8 85091913 85112210 + MGP_CASTEiJ_P0089925 Tnpo2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088782.1 MGP_CASTEiJ_G0032569.1 mouse_genomes_project 8 38830992 38846179 - MGP_CASTEiJ_P0088782 Cnot7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088783.1 MGP_CASTEiJ_G0032569.1 mouse_genomes_project 8 38834247 38855842 - MGP_CASTEiJ_P0088783 Cnot7 protein_coding protein_coding MGP_CASTEiJ_T0088784.1 MGP_CASTEiJ_G0032569.1 mouse_genomes_project 8 38834249 38859890 - MGP_CASTEiJ_P0088784 Cnot7 protein_coding protein_coding MGP_CASTEiJ_T0088785.1 MGP_CASTEiJ_G0032569.1 mouse_genomes_project 8 38834250 38855806 - Cnot7 protein_coding retained_intron MGP_CASTEiJ_T0088786.1 MGP_CASTEiJ_G0032569.1 mouse_genomes_project 8 38834254 38855806 - MGP_CASTEiJ_P0088786 Cnot7 protein_coding protein_coding MGP_CASTEiJ_T0088787.1 MGP_CASTEiJ_G0032569.1 mouse_genomes_project 8 38834743 38855391 - MGP_CASTEiJ_P0088787 Cnot7 protein_coding protein_coding MGP_CASTEiJ_T0088788.1 MGP_CASTEiJ_G0032569.1 mouse_genomes_project 8 38835721 38844896 - Cnot7 protein_coding processed_transcript MGP_CASTEiJ_T0088789.1 MGP_CASTEiJ_G0032569.1 mouse_genomes_project 8 38838457 38851496 - Cnot7 protein_coding retained_intron MGP_CASTEiJ_T0088791.1 MGP_CASTEiJ_G0032569.1 mouse_genomes_project 8 38844556 38851413 - Cnot7 protein_coding processed_transcript MGP_CASTEiJ_T0088792.1 MGP_CASTEiJ_G0032569.1 mouse_genomes_project 8 38851145 38855810 - Cnot7 protein_coding processed_transcript MGP_CASTEiJ_T0088793.1 MGP_CASTEiJ_G0032569.1 mouse_genomes_project 8 38853819 38859878 - Cnot7 protein_coding processed_transcript MGP_CASTEiJ_T0088794.1 MGP_CASTEiJ_G0032569.1 mouse_genomes_project 8 38853899 38855391 - Cnot7 protein_coding processed_transcript MGP_CASTEiJ_T0089721.1 MGP_CASTEiJ_G0032854.1 mouse_genomes_project 8 83622374 83658767 - MGP_CASTEiJ_P0089721 Pkn1 protein_coding protein_coding MGP_CASTEiJ_T0089722.1 MGP_CASTEiJ_G0032854.1 mouse_genomes_project 8 83622703 83653657 - MGP_CASTEiJ_P0089722 Pkn1 protein_coding protein_coding MGP_CASTEiJ_T0089723.1 MGP_CASTEiJ_G0032854.1 mouse_genomes_project 8 83622711 83658685 - MGP_CASTEiJ_P0089723 Pkn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089724.1 MGP_CASTEiJ_G0032854.1 mouse_genomes_project 8 83622739 83629222 - Pkn1 protein_coding retained_intron MGP_CASTEiJ_T0089725.1 MGP_CASTEiJ_G0032854.1 mouse_genomes_project 8 83623199 83624386 - Pkn1 protein_coding processed_transcript MGP_CASTEiJ_T0089726.1 MGP_CASTEiJ_G0032854.1 mouse_genomes_project 8 83625632 83626201 - Pkn1 protein_coding retained_intron MGP_CASTEiJ_T0089727.1 MGP_CASTEiJ_G0032854.1 mouse_genomes_project 8 83626087 83632697 - Pkn1 protein_coding processed_transcript MGP_CASTEiJ_T0089728.1 MGP_CASTEiJ_G0032854.1 mouse_genomes_project 8 83632645 83636494 - Pkn1 protein_coding retained_intron MGP_CASTEiJ_T0089729.1 MGP_CASTEiJ_G0032854.1 mouse_genomes_project 8 83649516 83658755 - Pkn1 protein_coding retained_intron MGP_CASTEiJ_T0090079.1 MGP_CASTEiJ_G0032950.1 mouse_genomes_project 8 92142697 92146082 - MGP_CASTEiJ_P0090079 Irx3 protein_coding protein_coding MGP_CASTEiJ_T0090080.1 MGP_CASTEiJ_G0032950.1 mouse_genomes_project 8 92142697 92146081 - MGP_CASTEiJ_P0090080 Irx3 protein_coding protein_coding MGP_CASTEiJ_T0008853.1 MGP_CASTEiJ_G0007136.1 mouse_genomes_project 8 30814998 30885771 - Gm3985 lincRNA lincRNA MGP_CASTEiJ_T0008854.1 MGP_CASTEiJ_G0007136.1 mouse_genomes_project 8 30816967 30875750 - Gm3985 lincRNA lincRNA MGP_CASTEiJ_T0100060.1 MGP_CASTEiJ_G0036973.1 mouse_genomes_project 8 35535357 35535459 - Gm25126 snRNA snRNA MGP_CASTEiJ_T0090875.1 MGP_CASTEiJ_G0033223.1 mouse_genomes_project 8 124096773 124108060 - MGP_CASTEiJ_P0090875 1700018B08Rik protein_coding protein_coding MGP_CASTEiJ_T0090876.1 MGP_CASTEiJ_G0033223.1 mouse_genomes_project 8 124096821 124107975 - MGP_CASTEiJ_P0090876 1700018B08Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090877.1 MGP_CASTEiJ_G0033223.1 mouse_genomes_project 8 124096821 124107975 - MGP_CASTEiJ_P0090877 1700018B08Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090878.1 MGP_CASTEiJ_G0033223.1 mouse_genomes_project 8 124097804 124110413 - MGP_CASTEiJ_P0090878 1700018B08Rik protein_coding protein_coding MGP_CASTEiJ_T0102603.1 MGP_CASTEiJ_G0039327.1 mouse_genomes_project 8 16769586 16770446 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0089252.1 MGP_CASTEiJ_G0032702.1 mouse_genomes_project 8 69517225 69524580 + MGP_CASTEiJ_P0089252 Hapln4 protein_coding protein_coding MGP_CASTEiJ_T0091084.1 MGP_CASTEiJ_G0033277.1 mouse_genomes_project 8 126599963 126635281 - MGP_CASTEiJ_P0091084 Abcb10 protein_coding protein_coding MGP_CASTEiJ_T0088225.1 MGP_CASTEiJ_G0032371.1 mouse_genomes_project 8 8587215 8631633 - MGP_CASTEiJ_P0088225 Cars2 protein_coding protein_coding MGP_CASTEiJ_T0088226.1 MGP_CASTEiJ_G0032371.1 mouse_genomes_project 8 8587217 8631539 - MGP_CASTEiJ_P0088226 Cars2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100083.1 MGP_CASTEiJ_G0036996.1 mouse_genomes_project 8 92396748 92396852 + Gm24254 snRNA snRNA MGP_CASTEiJ_T0088195.1 MGP_CASTEiJ_G0032355.1 mouse_genomes_project 8 1532697 1533524 - MGP_CASTEiJ_P0088195 protein_coding protein_coding MGP_CASTEiJ_T0089450.1 MGP_CASTEiJ_G0032758.1 mouse_genomes_project 8 70939520 70943401 + MGP_CASTEiJ_P0089450 Ankle1 protein_coding protein_coding MGP_CASTEiJ_T0089451.1 MGP_CASTEiJ_G0032758.1 mouse_genomes_project 8 70939526 70943365 + Ankle1 protein_coding retained_intron MGP_CASTEiJ_T0089452.1 MGP_CASTEiJ_G0032758.1 mouse_genomes_project 8 70939532 70942989 + Ankle1 protein_coding retained_intron MGP_CASTEiJ_T0089453.1 MGP_CASTEiJ_G0032758.1 mouse_genomes_project 8 70939534 70942996 + MGP_CASTEiJ_P0089453 Ankle1 protein_coding protein_coding MGP_CASTEiJ_T0089454.1 MGP_CASTEiJ_G0032758.1 mouse_genomes_project 8 70941201 70942668 + Ankle1 protein_coding retained_intron MGP_CASTEiJ_T0005234.1 MGP_CASTEiJ_G0004445.1 mouse_genomes_project 8 85378543 85380822 + antisense antisense MGP_CASTEiJ_T0090145.1 MGP_CASTEiJ_G0032974.1 mouse_genomes_project 8 94674812 94676049 + MGP_CASTEiJ_P0090145 Mt1 protein_coding protein_coding MGP_CASTEiJ_T0089572.1 MGP_CASTEiJ_G0032796.1 mouse_genomes_project 8 72033364 72050675 + MGP_CASTEiJ_P0089572 protein_coding protein_coding MGP_CASTEiJ_T0089573.1 MGP_CASTEiJ_G0032796.1 mouse_genomes_project 8 72033416 72050315 + MGP_CASTEiJ_P0089573 protein_coding protein_coding MGP_CASTEiJ_T0089574.1 MGP_CASTEiJ_G0032796.1 mouse_genomes_project 8 72047564 72048326 + protein_coding retained_intron MGP_CASTEiJ_T0008964.1 MGP_CASTEiJ_G0007217.1 mouse_genomes_project 8 124242554 124243018 + Gm27030 lincRNA lincRNA MGP_CASTEiJ_T0089160.1 MGP_CASTEiJ_G0032674.1 mouse_genomes_project 8 67678815 68053805 - MGP_CASTEiJ_P0089160 Csgalnact1 protein_coding protein_coding MGP_CASTEiJ_T0089161.1 MGP_CASTEiJ_G0032674.1 mouse_genomes_project 8 67680002 68053773 - MGP_CASTEiJ_P0089161 Csgalnact1 protein_coding protein_coding MGP_CASTEiJ_T0089162.1 MGP_CASTEiJ_G0032674.1 mouse_genomes_project 8 67710097 68053761 - MGP_CASTEiJ_P0089162 Csgalnact1 protein_coding protein_coding MGP_CASTEiJ_T0089163.1 MGP_CASTEiJ_G0032674.1 mouse_genomes_project 8 67782009 68053774 - Csgalnact1 protein_coding processed_transcript MGP_CASTEiJ_T0089164.1 MGP_CASTEiJ_G0032674.1 mouse_genomes_project 8 67874069 68053773 - Csgalnact1 protein_coding processed_transcript MGP_CASTEiJ_T0089165.1 MGP_CASTEiJ_G0032674.1 mouse_genomes_project 8 67874168 68053774 - Csgalnact1 protein_coding processed_transcript MGP_CASTEiJ_T0089166.1 MGP_CASTEiJ_G0032674.1 mouse_genomes_project 8 67965804 68053774 - Csgalnact1 protein_coding processed_transcript MGP_CASTEiJ_T0089009.1 MGP_CASTEiJ_G0032629.1 mouse_genomes_project 8 54125787 54247043 + MGP_CASTEiJ_P0089009 Gpm6a protein_coding protein_coding MGP_CASTEiJ_T0090199.1 MGP_CASTEiJ_G0032990.1 mouse_genomes_project 8 95391763 95404255 - MGP_CASTEiJ_P0090199 Dok4 protein_coding protein_coding MGP_CASTEiJ_T0089179.1 MGP_CASTEiJ_G0032677.1 mouse_genomes_project 8 68383584 68436780 - MGP_CASTEiJ_P0089179 Slc18a1 protein_coding protein_coding MGP_CASTEiJ_T0089180.1 MGP_CASTEiJ_G0032677.1 mouse_genomes_project 8 68409636 68423705 - Slc18a1 protein_coding retained_intron MGP_CASTEiJ_T0089181.1 MGP_CASTEiJ_G0032677.1 mouse_genomes_project 8 68414807 68421986 - Slc18a1 protein_coding retained_intron MGP_CASTEiJ_T0089182.1 MGP_CASTEiJ_G0032677.1 mouse_genomes_project 8 68421578 68436793 - Slc18a1 protein_coding processed_transcript MGP_CASTEiJ_T0089183.1 MGP_CASTEiJ_G0032677.1 mouse_genomes_project 8 68421646 68436767 - Slc18a1 protein_coding processed_transcript MGP_CASTEiJ_T0089331.1 MGP_CASTEiJ_G0032717.1 mouse_genomes_project 8 69827053 69835592 + MGP_CASTEiJ_P0089331 Comp protein_coding protein_coding MGP_CASTEiJ_T0088329.1 MGP_CASTEiJ_G0032396.1 mouse_genomes_project 8 10618434 10634868 + MGP_CASTEiJ_P0088329 Grk1 protein_coding protein_coding MGP_CASTEiJ_T0090984.1 MGP_CASTEiJ_G0033250.1 mouse_genomes_project 8 125494947 125515658 + MGP_CASTEiJ_P0090984 Cdh15 protein_coding protein_coding MGP_CASTEiJ_T0088965.1 MGP_CASTEiJ_G0032616.1 mouse_genomes_project 8 46526330 46527107 + MGP_CASTEiJ_P0088965 protein_coding protein_coding MGP_CASTEiJ_T0090769.1 MGP_CASTEiJ_G0033196.1 mouse_genomes_project 8 121870073 121922657 - MGP_CASTEiJ_P0090769 Mbtps1 protein_coding protein_coding MGP_CASTEiJ_T0090770.1 MGP_CASTEiJ_G0033196.1 mouse_genomes_project 8 121870073 121922657 - MGP_CASTEiJ_P0090770 Mbtps1 protein_coding protein_coding MGP_CASTEiJ_T0088537.1 MGP_CASTEiJ_G0032487.1 mouse_genomes_project 8 22122505 22135363 - MGP_CASTEiJ_P0088537 Ido1 protein_coding protein_coding MGP_CASTEiJ_T0088538.1 MGP_CASTEiJ_G0032487.1 mouse_genomes_project 8 22122505 22136707 - MGP_CASTEiJ_P0088538 Ido1 protein_coding protein_coding MGP_CASTEiJ_T0088412.1 MGP_CASTEiJ_G0032421.1 mouse_genomes_project 8 16262817 16309622 + MGP_CASTEiJ_P0088412 Agpat5 protein_coding protein_coding MGP_CASTEiJ_T0088413.1 MGP_CASTEiJ_G0032421.1 mouse_genomes_project 8 16262819 16301719 + MGP_CASTEiJ_P0088413 Agpat5 protein_coding protein_coding MGP_CASTEiJ_T0089935.1 MGP_CASTEiJ_G0032907.1 mouse_genomes_project 8 85122820 85123235 - MGP_CASTEiJ_P0089935 Gm5741 protein_coding protein_coding MGP_CASTEiJ_T0090702.1 MGP_CASTEiJ_G0033172.1 mouse_genomes_project 8 116316666 116324563 + MGP_CASTEiJ_P0090702 Clec3a protein_coding protein_coding MGP_CASTEiJ_T0088451.1 MGP_CASTEiJ_G0032454.1 mouse_genomes_project 8 19379741 19379960 + MGP_CASTEiJ_P0088451 Defb35 protein_coding protein_coding MGP_CASTEiJ_T0091134.1 MGP_CASTEiJ_G0033293.1 mouse_genomes_project 8 127605562 127611464 + MGP_CASTEiJ_P0091134 Sprtn protein_coding protein_coding MGP_CASTEiJ_T0089596.1 MGP_CASTEiJ_G0032806.1 mouse_genomes_project 8 74399573 74421252 + MGP_CASTEiJ_P0089596 Isx protein_coding protein_coding MGP_CASTEiJ_T0089597.1 MGP_CASTEiJ_G0032806.1 mouse_genomes_project 8 74399930 74420893 + MGP_CASTEiJ_P0089597 Isx protein_coding protein_coding MGP_CASTEiJ_T0089499.1 MGP_CASTEiJ_G0032773.1 mouse_genomes_project 8 71180616 71228096 - MGP_CASTEiJ_P0089499 Unc13a protein_coding protein_coding MGP_CASTEiJ_T0089500.1 MGP_CASTEiJ_G0032773.1 mouse_genomes_project 8 71185229 71228075 - MGP_CASTEiJ_P0089500 Unc13a protein_coding protein_coding MGP_CASTEiJ_T0089501.1 MGP_CASTEiJ_G0032773.1 mouse_genomes_project 8 71190811 71197897 - MGP_CASTEiJ_P0089501 Unc13a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089502.1 MGP_CASTEiJ_G0032773.1 mouse_genomes_project 8 71191077 71199068 - Unc13a protein_coding retained_intron MGP_CASTEiJ_T0089503.1 MGP_CASTEiJ_G0032773.1 mouse_genomes_project 8 71195871 71227986 - MGP_CASTEiJ_P0089503 Unc13a protein_coding unknown_likely_coding MGP_CASTEiJ_T0089504.1 MGP_CASTEiJ_G0032773.1 mouse_genomes_project 8 71197959 71202408 - MGP_CASTEiJ_P0089504 Unc13a protein_coding protein_coding MGP_CASTEiJ_T0089505.1 MGP_CASTEiJ_G0032773.1 mouse_genomes_project 8 71210076 71214937 - MGP_CASTEiJ_P0089505 Unc13a protein_coding protein_coding MGP_CASTEiJ_T0089506.1 MGP_CASTEiJ_G0032773.1 mouse_genomes_project 8 71216820 71228080 - Unc13a protein_coding retained_intron MGP_CASTEiJ_T0089507.1 MGP_CASTEiJ_G0032773.1 mouse_genomes_project 8 71216825 71224635 - Unc13a protein_coding retained_intron MGP_CASTEiJ_T0088390.1 MGP_CASTEiJ_G0032416.1 mouse_genomes_project 8 12378644 12384632 - MGP_CASTEiJ_P0088390 protein_coding protein_coding MGP_CASTEiJ_T0088391.1 MGP_CASTEiJ_G0032416.1 mouse_genomes_project 8 12381063 12384641 - MGP_CASTEiJ_P0088391 protein_coding protein_coding MGP_CASTEiJ_T0089126.1 MGP_CASTEiJ_G0032663.1 mouse_genomes_project 8 64836294 65720872 + protein_coding processed_transcript MGP_CASTEiJ_T0089127.1 MGP_CASTEiJ_G0032663.1 mouse_genomes_project 8 64836403 65720283 + MGP_CASTEiJ_P0089127 protein_coding protein_coding MGP_CASTEiJ_T0089128.1 MGP_CASTEiJ_G0032663.1 mouse_genomes_project 8 64836419 65720625 + MGP_CASTEiJ_P0089128 protein_coding protein_coding MGP_CASTEiJ_T0089129.1 MGP_CASTEiJ_G0032663.1 mouse_genomes_project 8 64836431 65202467 + protein_coding retained_intron MGP_CASTEiJ_T0089130.1 MGP_CASTEiJ_G0032663.1 mouse_genomes_project 8 64836480 65722535 + MGP_CASTEiJ_P0089130 protein_coding protein_coding MGP_CASTEiJ_T0089131.1 MGP_CASTEiJ_G0032663.1 mouse_genomes_project 8 64836919 65721325 + MGP_CASTEiJ_P0089131 protein_coding protein_coding MGP_CASTEiJ_T0089132.1 MGP_CASTEiJ_G0032663.1 mouse_genomes_project 8 65201295 65722523 + MGP_CASTEiJ_P0089132 protein_coding protein_coding MGP_CASTEiJ_T0089133.1 MGP_CASTEiJ_G0032663.1 mouse_genomes_project 8 65363148 65722523 + MGP_CASTEiJ_P0089133 protein_coding protein_coding MGP_CASTEiJ_T0089134.1 MGP_CASTEiJ_G0032663.1 mouse_genomes_project 8 65363148 65722523 + MGP_CASTEiJ_P0089134 protein_coding protein_coding MGP_CASTEiJ_T0089135.1 MGP_CASTEiJ_G0032663.1 mouse_genomes_project 8 65633083 65721319 + MGP_CASTEiJ_P0089135 protein_coding protein_coding MGP_CASTEiJ_T0089136.1 MGP_CASTEiJ_G0032663.1 mouse_genomes_project 8 65633090 65721329 + MGP_CASTEiJ_P0089136 protein_coding protein_coding MGP_CASTEiJ_T0090890.1 MGP_CASTEiJ_G0033227.1 mouse_genomes_project 8 124326243 124386678 + Jph3 protein_coding processed_transcript MGP_CASTEiJ_T0090891.1 MGP_CASTEiJ_G0033227.1 mouse_genomes_project 8 124327120 124393175 + MGP_CASTEiJ_P0090891 Jph3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090892.1 MGP_CASTEiJ_G0033227.1 mouse_genomes_project 8 124327176 124387882 + MGP_CASTEiJ_P0090892 Jph3 protein_coding protein_coding MGP_CASTEiJ_T0090893.1 MGP_CASTEiJ_G0033227.1 mouse_genomes_project 8 124327180 124391326 + MGP_CASTEiJ_P0090893 Jph3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090894.1 MGP_CASTEiJ_G0033227.1 mouse_genomes_project 8 124350288 124379594 + Jph3 protein_coding retained_intron MGP_CASTEiJ_T0088196.1 MGP_CASTEiJ_G0032356.1 mouse_genomes_project 8 1592829 1634535 - MGP_CASTEiJ_P0088196 Shcbp1 protein_coding protein_coding MGP_CASTEiJ_T0090783.1 MGP_CASTEiJ_G0033202.1 mouse_genomes_project 8 122039290 122058932 + MGP_CASTEiJ_P0090783 Wfdc1 protein_coding protein_coding MGP_CASTEiJ_T0101325.1 MGP_CASTEiJ_G0038238.1 mouse_genomes_project 8 82325564 82325700 + Gm25138 snoRNA snoRNA MGP_CASTEiJ_T0088962.1 MGP_CASTEiJ_G0032613.1 mouse_genomes_project 8 46347094 46349781 + MGP_CASTEiJ_P0088962 protein_coding protein_coding MGP_CASTEiJ_T0088165.1 MGP_CASTEiJ_G0032349.1 mouse_genomes_project 8 1116647 1119768 + MGP_CASTEiJ_P0088165 Snapc2 protein_coding protein_coding MGP_CASTEiJ_T0088317.1 MGP_CASTEiJ_G0032392.1 mouse_genomes_project 8 10454665 10483780 - MGP_CASTEiJ_P0088317 Dcun1d2 protein_coding protein_coding MGP_CASTEiJ_T0088318.1 MGP_CASTEiJ_G0032392.1 mouse_genomes_project 8 10454673 10491539 - MGP_CASTEiJ_P0088318 Dcun1d2 protein_coding protein_coding MGP_CASTEiJ_T0088319.1 MGP_CASTEiJ_G0032392.1 mouse_genomes_project 8 10454674 10491245 - MGP_CASTEiJ_P0088319 Dcun1d2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088320.1 MGP_CASTEiJ_G0032392.1 mouse_genomes_project 8 10454674 10491256 - MGP_CASTEiJ_P0088320 Dcun1d2 protein_coding protein_coding MGP_CASTEiJ_T0088321.1 MGP_CASTEiJ_G0032392.1 mouse_genomes_project 8 10454675 10491538 - Dcun1d2 protein_coding processed_transcript MGP_CASTEiJ_T0088322.1 MGP_CASTEiJ_G0032392.1 mouse_genomes_project 8 10458627 10491248 - MGP_CASTEiJ_P0088322 Dcun1d2 protein_coding protein_coding MGP_CASTEiJ_T0088323.1 MGP_CASTEiJ_G0032392.1 mouse_genomes_project 8 10481211 10484289 - Dcun1d2 protein_coding retained_intron MGP_CASTEiJ_T0089645.1 MGP_CASTEiJ_G0032824.1 mouse_genomes_project 8 78526610 78542857 - MGP_CASTEiJ_P0089645 Lsm6 protein_coding protein_coding MGP_CASTEiJ_T0089646.1 MGP_CASTEiJ_G0032824.1 mouse_genomes_project 8 78528201 78542857 - MGP_CASTEiJ_P0089646 Lsm6 protein_coding protein_coding MGP_CASTEiJ_T0089647.1 MGP_CASTEiJ_G0032824.1 mouse_genomes_project 8 78529787 78531961 - Lsm6 protein_coding retained_intron MGP_CASTEiJ_T0089648.1 MGP_CASTEiJ_G0032824.1 mouse_genomes_project 8 78529808 78534966 - Lsm6 protein_coding retained_intron MGP_CASTEiJ_T0091106.1 MGP_CASTEiJ_G0033283.1 mouse_genomes_project 8 127236713 127250973 - MGP_CASTEiJ_P0091106 Agt protein_coding protein_coding MGP_CASTEiJ_T0088949.1 MGP_CASTEiJ_G0032610.1 mouse_genomes_project 8 46137716 46183586 - MGP_CASTEiJ_P0088949 Trappc11 protein_coding protein_coding MGP_CASTEiJ_T0088950.1 MGP_CASTEiJ_G0032610.1 mouse_genomes_project 8 46137729 46173410 - Trappc11 protein_coding retained_intron MGP_CASTEiJ_T0088951.1 MGP_CASTEiJ_G0032610.1 mouse_genomes_project 8 46137730 46183589 - Trappc11 protein_coding retained_intron MGP_CASTEiJ_T0088952.1 MGP_CASTEiJ_G0032610.1 mouse_genomes_project 8 46153009 46160075 - MGP_CASTEiJ_P0088952 Trappc11 protein_coding protein_coding MGP_CASTEiJ_T0088953.1 MGP_CASTEiJ_G0032610.1 mouse_genomes_project 8 46173054 46178134 - Trappc11 protein_coding retained_intron MGP_CASTEiJ_T0089240.1 MGP_CASTEiJ_G0032698.1 mouse_genomes_project 8 69320641 69364390 - MGP_CASTEiJ_P0089240 Gatad2a protein_coding unknown_likely_coding MGP_CASTEiJ_T0089241.1 MGP_CASTEiJ_G0032698.1 mouse_genomes_project 8 69320646 69416573 - MGP_CASTEiJ_P0089241 Gatad2a protein_coding protein_coding MGP_CASTEiJ_T0089242.1 MGP_CASTEiJ_G0032698.1 mouse_genomes_project 8 69320646 69390407 - MGP_CASTEiJ_P0089242 Gatad2a protein_coding protein_coding MGP_CASTEiJ_T0089243.1 MGP_CASTEiJ_G0032698.1 mouse_genomes_project 8 69320646 69416573 - MGP_CASTEiJ_P0089243 Gatad2a protein_coding protein_coding MGP_CASTEiJ_T0088427.1 MGP_CASTEiJ_G0032431.1 mouse_genomes_project 8 16613728 16614584 + MGP_CASTEiJ_P0088427 Defb14 protein_coding protein_coding MGP_CASTEiJ_T0090173.1 MGP_CASTEiJ_G0032984.1 mouse_genomes_project 8 95271632 95277664 + MGP_CASTEiJ_P0090173 Ccl22 protein_coding protein_coding MGP_CASTEiJ_T0090174.1 MGP_CASTEiJ_G0032984.1 mouse_genomes_project 8 95271722 95275838 + Ccl22 protein_coding processed_transcript MGP_CASTEiJ_T0089626.1 MGP_CASTEiJ_G0032816.1 mouse_genomes_project 8 77194049 77219634 + MGP_CASTEiJ_P0089626 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0090614.1 MGP_CASTEiJ_G0033145.1 mouse_genomes_project 8 112674987 112678777 + MGP_CASTEiJ_P0090614 Aars protein_coding protein_coding MGP_CASTEiJ_T0090615.1 MGP_CASTEiJ_G0033145.1 mouse_genomes_project 8 112675722 112687907 + Aars protein_coding retained_intron MGP_CASTEiJ_T0090616.1 MGP_CASTEiJ_G0033145.1 mouse_genomes_project 8 112675745 112701502 + MGP_CASTEiJ_P0090616 Aars protein_coding protein_coding MGP_CASTEiJ_T0090617.1 MGP_CASTEiJ_G0033145.1 mouse_genomes_project 8 112675759 112689523 + Aars protein_coding retained_intron MGP_CASTEiJ_T0090618.1 MGP_CASTEiJ_G0033145.1 mouse_genomes_project 8 112683529 112684626 + Aars protein_coding retained_intron MGP_CASTEiJ_T0090619.1 MGP_CASTEiJ_G0033145.1 mouse_genomes_project 8 112684895 112687905 + Aars protein_coding retained_intron MGP_CASTEiJ_T0090620.1 MGP_CASTEiJ_G0033145.1 mouse_genomes_project 8 112690689 112692781 + Aars protein_coding retained_intron MGP_CASTEiJ_T0100080.1 MGP_CASTEiJ_G0036993.1 mouse_genomes_project 8 86335814 86335912 + Gm24490 snRNA snRNA MGP_CASTEiJ_T0090277.1 MGP_CASTEiJ_G0033020.1 mouse_genomes_project 8 105448756 105457879 + MGP_CASTEiJ_P0090277 Cmtm2b protein_coding protein_coding MGP_CASTEiJ_T0089254.1 MGP_CASTEiJ_G0032704.1 mouse_genomes_project 8 69570197 69578475 - MGP_CASTEiJ_P0089254 Rfxank protein_coding protein_coding MGP_CASTEiJ_T0089256.1 MGP_CASTEiJ_G0032704.1 mouse_genomes_project 8 69572656 69578503 - MGP_CASTEiJ_P0089256 Rfxank protein_coding unknown_likely_coding MGP_CASTEiJ_T0088613.1 MGP_CASTEiJ_G0032503.1 mouse_genomes_project 8 23389552 23410882 - MGP_CASTEiJ_P0088613 Bag4 protein_coding protein_coding MGP_CASTEiJ_T0101318.1 MGP_CASTEiJ_G0038231.1 mouse_genomes_project 8 66561092 66561242 - Gm24677 snoRNA snoRNA MGP_CASTEiJ_T0090406.1 MGP_CASTEiJ_G0033070.1 mouse_genomes_project 8 106941709 106993360 - MGP_CASTEiJ_P0090406 Gfod2 protein_coding protein_coding MGP_CASTEiJ_T0090407.1 MGP_CASTEiJ_G0033070.1 mouse_genomes_project 8 106945321 106993326 - MGP_CASTEiJ_P0090407 Gfod2 protein_coding protein_coding MGP_CASTEiJ_T0090408.1 MGP_CASTEiJ_G0033070.1 mouse_genomes_project 8 106957595 106993292 - Gfod2 protein_coding processed_transcript MGP_CASTEiJ_T0090519.1 MGP_CASTEiJ_G0033113.1 mouse_genomes_project 8 108797750 108810433 - MGP_CASTEiJ_P0090519 Nob1 protein_coding protein_coding MGP_CASTEiJ_T0090520.1 MGP_CASTEiJ_G0033113.1 mouse_genomes_project 8 108797756 108806770 - Nob1 protein_coding retained_intron MGP_CASTEiJ_T0090521.1 MGP_CASTEiJ_G0033113.1 mouse_genomes_project 8 108797756 108810419 - MGP_CASTEiJ_P0090521 Nob1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090522.1 MGP_CASTEiJ_G0033113.1 mouse_genomes_project 8 108801501 108810364 - Nob1 protein_coding retained_intron MGP_CASTEiJ_T0090523.1 MGP_CASTEiJ_G0033113.1 mouse_genomes_project 8 108802908 108810429 - Nob1 protein_coding retained_intron MGP_CASTEiJ_T0090524.1 MGP_CASTEiJ_G0033113.1 mouse_genomes_project 8 108803267 108807525 - Nob1 protein_coding processed_transcript MGP_CASTEiJ_T0090525.1 MGP_CASTEiJ_G0033113.1 mouse_genomes_project 8 108803365 108803877 - Nob1 protein_coding retained_intron MGP_CASTEiJ_T0090526.1 MGP_CASTEiJ_G0033113.1 mouse_genomes_project 8 108803560 108810404 - MGP_CASTEiJ_P0090526 Nob1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0015348.1 MGP_CASTEiJ_G0013511.1 mouse_genomes_project 8 16064008 16064383 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088326.1 MGP_CASTEiJ_G0032394.1 mouse_genomes_project 8 10550268 10591573 + MGP_CASTEiJ_P0088326 Tfdp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088327.1 MGP_CASTEiJ_G0032394.1 mouse_genomes_project 8 10551154 10590828 + MGP_CASTEiJ_P0088327 Tfdp1 protein_coding protein_coding MGP_CASTEiJ_T0089695.1 MGP_CASTEiJ_G0032841.1 mouse_genomes_project 8 82771945 83007285 + MGP_CASTEiJ_P0089695 Rnf150 protein_coding protein_coding MGP_CASTEiJ_T0090561.1 MGP_CASTEiJ_G0033127.1 mouse_genomes_project 8 111486876 111501114 - MGP_CASTEiJ_P0090561 Marveld3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090562.1 MGP_CASTEiJ_G0033127.1 mouse_genomes_project 8 111486889 111501286 - MGP_CASTEiJ_P0090562 Marveld3 protein_coding protein_coding MGP_CASTEiJ_T0090563.1 MGP_CASTEiJ_G0033127.1 mouse_genomes_project 8 111491930 111501321 - MGP_CASTEiJ_P0090563 Marveld3 protein_coding protein_coding MGP_CASTEiJ_T0090564.1 MGP_CASTEiJ_G0033127.1 mouse_genomes_project 8 111498755 111501171 - Marveld3 protein_coding retained_intron MGP_CASTEiJ_T0091054.1 MGP_CASTEiJ_G0033265.1 mouse_genomes_project 8 126064153 126093350 + MGP_CASTEiJ_P0091054 Tcf25 protein_coding protein_coding MGP_CASTEiJ_T0091055.1 MGP_CASTEiJ_G0033265.1 mouse_genomes_project 8 126064164 126096431 + MGP_CASTEiJ_P0091055 Tcf25 protein_coding protein_coding MGP_CASTEiJ_T0002261.1 MGP_CASTEiJ_G0002180.1 mouse_genomes_project 8 85473510 85474148 + TEC TEC MGP_CASTEiJ_T0002262.1 MGP_CASTEiJ_G0002180.1 mouse_genomes_project 8 85473510 85474140 + TEC TEC MGP_CASTEiJ_T0005188.1 MGP_CASTEiJ_G0004410.1 mouse_genomes_project 8 10010763 10014345 - Gm15350 antisense antisense MGP_CASTEiJ_T0005189.1 MGP_CASTEiJ_G0004410.1 mouse_genomes_project 8 10010763 10016287 - Gm15350 antisense antisense MGP_CASTEiJ_T0090102.1 MGP_CASTEiJ_G0032961.1 mouse_genomes_project 8 93645478 93675723 - MGP_CASTEiJ_P0090102 Ces1e protein_coding unknown_likely_coding MGP_CASTEiJ_T0090103.1 MGP_CASTEiJ_G0032961.1 mouse_genomes_project 8 93645481 93675763 - MGP_CASTEiJ_P0090103 Ces1e protein_coding protein_coding MGP_CASTEiJ_T0090104.1 MGP_CASTEiJ_G0032961.1 mouse_genomes_project 8 93645665 93675762 - MGP_CASTEiJ_P0090104 Ces1e protein_coding protein_coding MGP_CASTEiJ_T0090105.1 MGP_CASTEiJ_G0032961.1 mouse_genomes_project 8 93654396 93663604 - Ces1e protein_coding retained_intron MGP_CASTEiJ_T0090299.1 MGP_CASTEiJ_G0033027.1 mouse_genomes_project 8 105744279 105750003 + MGP_CASTEiJ_P0090299 Pdp2 protein_coding protein_coding MGP_CASTEiJ_T0090330.1 MGP_CASTEiJ_G0033041.1 mouse_genomes_project 8 106425358 106458806 + MGP_CASTEiJ_P0090330 D230025D16Rik protein_coding protein_coding MGP_CASTEiJ_T0090331.1 MGP_CASTEiJ_G0033041.1 mouse_genomes_project 8 106425419 106456866 + D230025D16Rik protein_coding retained_intron MGP_CASTEiJ_T0090332.1 MGP_CASTEiJ_G0033041.1 mouse_genomes_project 8 106425419 106458509 + MGP_CASTEiJ_P0090332 D230025D16Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090333.1 MGP_CASTEiJ_G0033041.1 mouse_genomes_project 8 106425480 106458806 + MGP_CASTEiJ_P0090333 D230025D16Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090334.1 MGP_CASTEiJ_G0033041.1 mouse_genomes_project 8 106431132 106443477 + MGP_CASTEiJ_P0090334 D230025D16Rik protein_coding protein_coding MGP_CASTEiJ_T0090335.1 MGP_CASTEiJ_G0033041.1 mouse_genomes_project 8 106452222 106457509 + D230025D16Rik protein_coding retained_intron MGP_CASTEiJ_T0089238.1 MGP_CASTEiJ_G0032696.1 mouse_genomes_project 8 69307969 69316179 - MGP_CASTEiJ_P0089238 Ndufa13 protein_coding protein_coding MGP_CASTEiJ_T0089391.1 MGP_CASTEiJ_G0032738.1 mouse_genomes_project 8 70237385 70239645 - MGP_CASTEiJ_P0089391 Mpv17l2 protein_coding protein_coding MGP_CASTEiJ_T0089498.1 MGP_CASTEiJ_G0032772.1 mouse_genomes_project 8 71167217 71181109 + MGP_CASTEiJ_P0089498 Colgalt1 protein_coding protein_coding MGP_CASTEiJ_T0088771.1 MGP_CASTEiJ_G0032566.1 mouse_genomes_project 8 38613940 38621818 - MGP_CASTEiJ_P0088771 Fgf20 protein_coding protein_coding MGP_CASTEiJ_T0088772.1 MGP_CASTEiJ_G0032566.1 mouse_genomes_project 8 38614727 38644804 - MGP_CASTEiJ_P0088772 Fgf20 protein_coding protein_coding MGP_CASTEiJ_T0089326.1 MGP_CASTEiJ_G0032715.1 mouse_genomes_project 8 69764319 69781755 + MGP_CASTEiJ_P0089326 protein_coding protein_coding MGP_CASTEiJ_T0089327.1 MGP_CASTEiJ_G0032715.1 mouse_genomes_project 8 69764319 69781760 + MGP_CASTEiJ_P0089327 protein_coding protein_coding MGP_CASTEiJ_T0089328.1 MGP_CASTEiJ_G0032715.1 mouse_genomes_project 8 69766894 69772836 + protein_coding retained_intron MGP_CASTEiJ_T0101340.1 MGP_CASTEiJ_G0038253.1 mouse_genomes_project 8 112458037 112458113 - Gm22193 snoRNA snoRNA MGP_CASTEiJ_T0089558.1 MGP_CASTEiJ_G0032788.1 mouse_genomes_project 8 71771069 71786622 + MGP_CASTEiJ_P0089558 Hsh2d protein_coding protein_coding MGP_CASTEiJ_T0089559.1 MGP_CASTEiJ_G0032788.1 mouse_genomes_project 8 71779118 71786659 + MGP_CASTEiJ_P0089559 Hsh2d protein_coding protein_coding MGP_CASTEiJ_T0090354.1 MGP_CASTEiJ_G0033049.1 mouse_genomes_project 8 106505733 106513258 + MGP_CASTEiJ_P0090354 E2f4 protein_coding protein_coding MGP_CASTEiJ_T0090392.1 MGP_CASTEiJ_G0033064.1 mouse_genomes_project 8 106861015 106909395 + Ctcf protein_coding processed_transcript MGP_CASTEiJ_T0090393.1 MGP_CASTEiJ_G0033064.1 mouse_genomes_project 8 106861026 106910671 + MGP_CASTEiJ_P0090393 Ctcf protein_coding protein_coding MGP_CASTEiJ_T0090394.1 MGP_CASTEiJ_G0033064.1 mouse_genomes_project 8 106862776 106890612 + Ctcf protein_coding processed_transcript MGP_CASTEiJ_T0090395.1 MGP_CASTEiJ_G0033064.1 mouse_genomes_project 8 106862907 106890329 + Ctcf protein_coding processed_transcript MGP_CASTEiJ_T0090396.1 MGP_CASTEiJ_G0033064.1 mouse_genomes_project 8 106902992 106908363 + Ctcf protein_coding retained_intron MGP_CASTEiJ_T0090397.1 MGP_CASTEiJ_G0033064.1 mouse_genomes_project 8 106902992 106907433 + Ctcf protein_coding processed_transcript MGP_CASTEiJ_T0090044.1 MGP_CASTEiJ_G0032940.1 mouse_genomes_project 8 88850347 88904655 + MGP_CASTEiJ_P0090044 Cyld protein_coding unknown_likely_coding MGP_CASTEiJ_T0090045.1 MGP_CASTEiJ_G0032940.1 mouse_genomes_project 8 88850385 88910123 + MGP_CASTEiJ_P0090045 Cyld protein_coding protein_coding MGP_CASTEiJ_T0090046.1 MGP_CASTEiJ_G0032940.1 mouse_genomes_project 8 88860669 88910123 + MGP_CASTEiJ_P0090046 Cyld protein_coding protein_coding MGP_CASTEiJ_T0010652.1 MGP_CASTEiJ_G0008840.1 mouse_genomes_project 8 38644352 38644407 - Mir7666 miRNA miRNA MGP_CASTEiJ_T0098407.1 MGP_CASTEiJ_G0035338.1 mouse_genomes_project 8 95498935 95504016 - pseudogene pseudogene MGP_CASTEiJ_T0090275.1 MGP_CASTEiJ_G0033019.1 mouse_genomes_project 8 105376294 105397224 + MGP_CASTEiJ_P0090275 Cklf protein_coding protein_coding MGP_CASTEiJ_T0090276.1 MGP_CASTEiJ_G0033019.1 mouse_genomes_project 8 105376380 105392316 + MGP_CASTEiJ_P0090276 Cklf protein_coding protein_coding MGP_CASTEiJ_T0090068.1 MGP_CASTEiJ_G0032948.1 mouse_genomes_project 8 91512901 91614238 - MGP_CASTEiJ_P0090068 Rpgrip1l protein_coding protein_coding MGP_CASTEiJ_T0090069.1 MGP_CASTEiJ_G0032948.1 mouse_genomes_project 8 91514824 91614199 - MGP_CASTEiJ_P0090069 Rpgrip1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090070.1 MGP_CASTEiJ_G0032948.1 mouse_genomes_project 8 91569262 91575928 - Rpgrip1l protein_coding retained_intron MGP_CASTEiJ_T0090071.1 MGP_CASTEiJ_G0032948.1 mouse_genomes_project 8 91608947 91612010 - MGP_CASTEiJ_P0090071 Rpgrip1l protein_coding protein_coding MGP_CASTEiJ_T0088445.1 MGP_CASTEiJ_G0032448.1 mouse_genomes_project 8 19217760 19232658 + MGP_CASTEiJ_P0088445 Defb50 protein_coding protein_coding MGP_CASTEiJ_T0089632.1 MGP_CASTEiJ_G0032819.1 mouse_genomes_project 8 77323045 77324448 - protein_coding retained_intron MGP_CASTEiJ_T0089633.1 MGP_CASTEiJ_G0032819.1 mouse_genomes_project 8 77324154 77327342 - protein_coding retained_intron MGP_CASTEiJ_T0090002.1 MGP_CASTEiJ_G0032927.1 mouse_genomes_project 8 86791865 86792770 + MGP_CASTEiJ_P0090002 Gm10638 protein_coding protein_coding MGP_CASTEiJ_T0089508.1 MGP_CASTEiJ_G0032774.1 mouse_genomes_project 8 71232379 71246662 + MGP_CASTEiJ_P0089508 Jak3 protein_coding protein_coding MGP_CASTEiJ_T0089509.1 MGP_CASTEiJ_G0032774.1 mouse_genomes_project 8 71232379 71244642 + MGP_CASTEiJ_P0089509 Jak3 protein_coding protein_coding MGP_CASTEiJ_T0089510.1 MGP_CASTEiJ_G0032774.1 mouse_genomes_project 8 71232635 71236351 + Jak3 protein_coding retained_intron MGP_CASTEiJ_T0089511.1 MGP_CASTEiJ_G0032774.1 mouse_genomes_project 8 71233629 71244644 + MGP_CASTEiJ_P0089511 Jak3 protein_coding protein_coding MGP_CASTEiJ_T0089512.1 MGP_CASTEiJ_G0032774.1 mouse_genomes_project 8 71234413 71246311 + Jak3 protein_coding retained_intron MGP_CASTEiJ_T0088483.1 MGP_CASTEiJ_G0032473.1 mouse_genomes_project 8 20117758 20164983 - MGP_CASTEiJ_P0088483 Ikbkb protein_coding protein_coding MGP_CASTEiJ_T0088484.1 MGP_CASTEiJ_G0032473.1 mouse_genomes_project 8 20117759 20164945 - MGP_CASTEiJ_P0088484 Ikbkb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088485.1 MGP_CASTEiJ_G0032473.1 mouse_genomes_project 8 20117759 20164939 - MGP_CASTEiJ_P0088485 Ikbkb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088486.1 MGP_CASTEiJ_G0032473.1 mouse_genomes_project 8 20118308 20164994 - MGP_CASTEiJ_P0088486 Ikbkb protein_coding protein_coding MGP_CASTEiJ_T0088487.1 MGP_CASTEiJ_G0032473.1 mouse_genomes_project 8 20118648 20120033 - MGP_CASTEiJ_P0088487 Ikbkb protein_coding protein_coding MGP_CASTEiJ_T0088488.1 MGP_CASTEiJ_G0032473.1 mouse_genomes_project 8 20118897 20164983 - Ikbkb protein_coding retained_intron MGP_CASTEiJ_T0088489.1 MGP_CASTEiJ_G0032473.1 mouse_genomes_project 8 20126588 20127606 - Ikbkb protein_coding retained_intron MGP_CASTEiJ_T0088490.1 MGP_CASTEiJ_G0032473.1 mouse_genomes_project 8 20134488 20164945 - Ikbkb protein_coding retained_intron MGP_CASTEiJ_T0088491.1 MGP_CASTEiJ_G0032473.1 mouse_genomes_project 8 20139679 20164944 - Ikbkb protein_coding retained_intron MGP_CASTEiJ_T0088492.1 MGP_CASTEiJ_G0032473.1 mouse_genomes_project 8 20141227 20152611 - MGP_CASTEiJ_P0088492 Ikbkb protein_coding protein_coding MGP_CASTEiJ_T0088493.1 MGP_CASTEiJ_G0032473.1 mouse_genomes_project 8 20147630 20164964 - Ikbkb protein_coding retained_intron MGP_CASTEiJ_T0088494.1 MGP_CASTEiJ_G0032473.1 mouse_genomes_project 8 20150387 20164979 - Ikbkb protein_coding retained_intron MGP_CASTEiJ_T0088495.1 MGP_CASTEiJ_G0032473.1 mouse_genomes_project 8 20160421 20164968 - Ikbkb protein_coding retained_intron MGP_CASTEiJ_T0088496.1 MGP_CASTEiJ_G0032473.1 mouse_genomes_project 8 20160857 20164930 - Ikbkb protein_coding processed_transcript MGP_CASTEiJ_T0015395.1 MGP_CASTEiJ_G0013558.1 mouse_genomes_project 8 85216917 85217162 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0089194.1 MGP_CASTEiJ_G0032680.1 mouse_genomes_project 8 68559880 68579853 + MGP_CASTEiJ_P0089194 Zfp930 protein_coding protein_coding MGP_CASTEiJ_T0101292.1 MGP_CASTEiJ_G0038205.1 mouse_genomes_project 8 15917104 15917235 - Gm24469 snoRNA snoRNA MGP_CASTEiJ_T0100079.1 MGP_CASTEiJ_G0036992.1 mouse_genomes_project 8 85352771 85352878 + Gm22336 snRNA snRNA MGP_CASTEiJ_T0017724.1 MGP_CASTEiJ_G0015033.1 mouse_genomes_project 8 76173482 76505336 - processed_transcript processed_transcript MGP_CASTEiJ_T0017725.1 MGP_CASTEiJ_G0015033.1 mouse_genomes_project 8 76342871 76505524 - processed_transcript processed_transcript MGP_CASTEiJ_T0017726.1 MGP_CASTEiJ_G0015033.1 mouse_genomes_project 8 76446176 76505972 - processed_transcript retained_intron MGP_CASTEiJ_T0090198.1 MGP_CASTEiJ_G0032989.1 mouse_genomes_project 8 95385374 95392178 + MGP_CASTEiJ_P0090198 Polr2c protein_coding protein_coding MGP_CASTEiJ_T0005224.1 MGP_CASTEiJ_G0004437.1 mouse_genomes_project 8 65686907 65690259 - Gm15356 antisense antisense MGP_CASTEiJ_T0088497.1 MGP_CASTEiJ_G0032474.1 mouse_genomes_project 8 20213743 20243208 + MGP_CASTEiJ_P0088497 Plat protein_coding protein_coding MGP_CASTEiJ_T0017740.1 MGP_CASTEiJ_G0015040.1 mouse_genomes_project 8 107418300 107421001 + 1810019D21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017741.1 MGP_CASTEiJ_G0015040.1 mouse_genomes_project 8 107418335 107420792 + 1810019D21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017742.1 MGP_CASTEiJ_G0015040.1 mouse_genomes_project 8 107419965 107421426 + 1810019D21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0090148.1 MGP_CASTEiJ_G0032976.1 mouse_genomes_project 8 94837914 94874878 + MGP_CASTEiJ_P0090148 Slc12a3 protein_coding protein_coding MGP_CASTEiJ_T0089374.1 MGP_CASTEiJ_G0032730.1 mouse_genomes_project 8 70102913 70105617 - MGP_CASTEiJ_P0089374 Gdf15 protein_coding protein_coding MGP_CASTEiJ_T0089375.1 MGP_CASTEiJ_G0032730.1 mouse_genomes_project 8 70102914 70105982 - MGP_CASTEiJ_P0089375 Gdf15 protein_coding protein_coding MGP_CASTEiJ_T0011399.1 MGP_CASTEiJ_G0009587.1 mouse_genomes_project 8 126214157 126214438 + Gm22314 misc_RNA misc_RNA MGP_CASTEiJ_T0090528.1 MGP_CASTEiJ_G0033115.1 mouse_genomes_project 8 108970148 108979937 - MGP_CASTEiJ_P0090528 Psmd7 protein_coding protein_coding MGP_CASTEiJ_T0090975.1 MGP_CASTEiJ_G0033247.1 mouse_genomes_project 8 125258542 125261822 - MGP_CASTEiJ_P0090975 Pabpn1l protein_coding protein_coding MGP_CASTEiJ_T0010707.1 MGP_CASTEiJ_G0008895.1 mouse_genomes_project 8 113407781 113407855 - Mir7076 miRNA miRNA MGP_CASTEiJ_T0005252.1 MGP_CASTEiJ_G0004461.1 mouse_genomes_project 8 116624798 116634854 - Gm16118 antisense antisense MGP_CASTEiJ_T0090049.1 MGP_CASTEiJ_G0032943.1 mouse_genomes_project 8 90482038 90589498 - MGP_CASTEiJ_P0090049 Tox3 protein_coding protein_coding MGP_CASTEiJ_T0090050.1 MGP_CASTEiJ_G0032943.1 mouse_genomes_project 8 90487746 90589286 - MGP_CASTEiJ_P0090050 Tox3 protein_coding protein_coding MGP_CASTEiJ_T0090051.1 MGP_CASTEiJ_G0032943.1 mouse_genomes_project 8 90494958 90589281 - MGP_CASTEiJ_P0090051 Tox3 protein_coding protein_coding MGP_CASTEiJ_T0091203.1 MGP_CASTEiJ_G0033311.1 mouse_genomes_project 8 131648160 131698693 + MGP_CASTEiJ_P0091203 Itgb1 protein_coding protein_coding MGP_CASTEiJ_T0091204.1 MGP_CASTEiJ_G0033311.1 mouse_genomes_project 8 131648263 131698108 + MGP_CASTEiJ_P0091204 Itgb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091205.1 MGP_CASTEiJ_G0033311.1 mouse_genomes_project 8 131648376 131675961 + Itgb1 protein_coding retained_intron MGP_CASTEiJ_T0091206.1 MGP_CASTEiJ_G0033311.1 mouse_genomes_project 8 131689336 131697890 + MGP_CASTEiJ_P0091206 Itgb1 protein_coding protein_coding MGP_CASTEiJ_T0090932.1 MGP_CASTEiJ_G0033234.1 mouse_genomes_project 8 124992385 125037637 + MGP_CASTEiJ_P0090932 Zc3h18 protein_coding protein_coding MGP_CASTEiJ_T0090933.1 MGP_CASTEiJ_G0033234.1 mouse_genomes_project 8 124992419 125037638 + MGP_CASTEiJ_P0090933 Zc3h18 protein_coding protein_coding MGP_CASTEiJ_T0090934.1 MGP_CASTEiJ_G0033234.1 mouse_genomes_project 8 124992420 125001912 + MGP_CASTEiJ_P0090934 Zc3h18 protein_coding protein_coding MGP_CASTEiJ_T0090935.1 MGP_CASTEiJ_G0033234.1 mouse_genomes_project 8 124992424 125007926 + Zc3h18 protein_coding retained_intron MGP_CASTEiJ_T0090936.1 MGP_CASTEiJ_G0033234.1 mouse_genomes_project 8 124992457 125037637 + MGP_CASTEiJ_P0090936 Zc3h18 protein_coding protein_coding MGP_CASTEiJ_T0090937.1 MGP_CASTEiJ_G0033234.1 mouse_genomes_project 8 125023550 125026391 + Zc3h18 protein_coding processed_transcript MGP_CASTEiJ_T0090938.1 MGP_CASTEiJ_G0033234.1 mouse_genomes_project 8 125023620 125031673 + MGP_CASTEiJ_P0090938 Zc3h18 protein_coding protein_coding MGP_CASTEiJ_T0090939.1 MGP_CASTEiJ_G0033234.1 mouse_genomes_project 8 125028112 125037637 + Zc3h18 protein_coding retained_intron MGP_CASTEiJ_T0090940.1 MGP_CASTEiJ_G0033234.1 mouse_genomes_project 8 125028287 125031174 + Zc3h18 protein_coding retained_intron MGP_CASTEiJ_T0090941.1 MGP_CASTEiJ_G0033234.1 mouse_genomes_project 8 125031594 125036524 + MGP_CASTEiJ_P0090941 Zc3h18 protein_coding protein_coding MGP_CASTEiJ_T0089056.1 MGP_CASTEiJ_G0032645.1 mouse_genomes_project 8 59970271 60016824 - MGP_CASTEiJ_P0089056 Clcn3 protein_coding protein_coding MGP_CASTEiJ_T0089057.1 MGP_CASTEiJ_G0032645.1 mouse_genomes_project 8 59970748 59982878 - Clcn3 protein_coding processed_transcript MGP_CASTEiJ_T0089058.1 MGP_CASTEiJ_G0032645.1 mouse_genomes_project 8 59971780 60016951 - MGP_CASTEiJ_P0089058 Clcn3 protein_coding protein_coding MGP_CASTEiJ_T0089059.1 MGP_CASTEiJ_G0032645.1 mouse_genomes_project 8 59971807 60017436 - Clcn3 protein_coding retained_intron MGP_CASTEiJ_T0089060.1 MGP_CASTEiJ_G0032645.1 mouse_genomes_project 8 59971807 60051823 - MGP_CASTEiJ_P0089060 Clcn3 protein_coding protein_coding MGP_CASTEiJ_T0089061.1 MGP_CASTEiJ_G0032645.1 mouse_genomes_project 8 59971807 60051823 - MGP_CASTEiJ_P0089061 Clcn3 protein_coding protein_coding MGP_CASTEiJ_T0089062.1 MGP_CASTEiJ_G0032645.1 mouse_genomes_project 8 59988202 60016982 - Clcn3 protein_coding retained_intron MGP_CASTEiJ_T0089063.1 MGP_CASTEiJ_G0032645.1 mouse_genomes_project 8 59996177 60051828 - Clcn3 protein_coding retained_intron MGP_CASTEiJ_T0089064.1 MGP_CASTEiJ_G0032645.1 mouse_genomes_project 8 59999313 60051870 - Clcn3 protein_coding retained_intron MGP_CASTEiJ_T0088446.1 MGP_CASTEiJ_G0032449.1 mouse_genomes_project 8 19252353 19252829 + MGP_CASTEiJ_P0088446 Defb2 protein_coding protein_coding MGP_CASTEiJ_T0101307.1 MGP_CASTEiJ_G0038220.1 mouse_genomes_project 8 46100645 46100779 + Gm22857 snoRNA snoRNA MGP_CASTEiJ_T0017699.1 MGP_CASTEiJ_G0015023.1 mouse_genomes_project 8 16057760 16086311 - Gm16725 processed_transcript processed_transcript MGP_CASTEiJ_T0088467.1 MGP_CASTEiJ_G0032462.1 mouse_genomes_project 8 19610131 19630133 - MGP_CASTEiJ_P0088467 Ckap2 protein_coding protein_coding MGP_CASTEiJ_T0101316.1 MGP_CASTEiJ_G0038229.1 mouse_genomes_project 8 65136060 65136195 + Gm26123 snoRNA snoRNA MGP_CASTEiJ_T0010640.1 MGP_CASTEiJ_G0008828.1 mouse_genomes_project 8 11139580 11139674 + miRNA miRNA MGP_CASTEiJ_T0091089.1 MGP_CASTEiJ_G0033280.1 mouse_genomes_project 8 126891002 127007890 + MGP_CASTEiJ_P0091089 Galnt2 protein_coding protein_coding MGP_CASTEiJ_T0091090.1 MGP_CASTEiJ_G0033280.1 mouse_genomes_project 8 126891083 127008348 + MGP_CASTEiJ_P0091090 Galnt2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091091.1 MGP_CASTEiJ_G0033280.1 mouse_genomes_project 8 126891112 126996413 + Galnt2 protein_coding processed_transcript MGP_CASTEiJ_T0091092.1 MGP_CASTEiJ_G0033280.1 mouse_genomes_project 8 126956196 126985002 + Galnt2 protein_coding processed_transcript MGP_CASTEiJ_T0091093.1 MGP_CASTEiJ_G0033280.1 mouse_genomes_project 8 126956458 127007892 + Galnt2 protein_coding processed_transcript MGP_CASTEiJ_T0088480.1 MGP_CASTEiJ_G0032470.1 mouse_genomes_project 8 20029188 20047250 - MGP_CASTEiJ_P0088480 protein_coding protein_coding MGP_CASTEiJ_T0010678.1 MGP_CASTEiJ_G0008866.1 mouse_genomes_project 8 84204918 84205024 + Mir24-2 miRNA miRNA MGP_CASTEiJ_T0088084.1 MGP_CASTEiJ_G0032328.1 mouse_genomes_project 8 536516 559597 + MGP_CASTEiJ_P0088084 Camsap3 protein_coding protein_coding MGP_CASTEiJ_T0088085.1 MGP_CASTEiJ_G0032328.1 mouse_genomes_project 8 536516 559597 + MGP_CASTEiJ_P0088085 Camsap3 protein_coding protein_coding MGP_CASTEiJ_T0088086.1 MGP_CASTEiJ_G0032328.1 mouse_genomes_project 8 536711 559572 + MGP_CASTEiJ_P0088086 Camsap3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0017746.1 MGP_CASTEiJ_G0015043.1 mouse_genomes_project 8 127543799 127569265 + Gm16163 processed_transcript processed_transcript MGP_CASTEiJ_T0101296.1 MGP_CASTEiJ_G0038209.1 mouse_genomes_project 8 22216735 22216859 + Gm26208 snoRNA snoRNA MGP_CASTEiJ_T0008931.1 MGP_CASTEiJ_G0007193.1 mouse_genomes_project 8 94933804 94944332 - 9330175E14Rik lincRNA lincRNA MGP_CASTEiJ_T0008932.1 MGP_CASTEiJ_G0007193.1 mouse_genomes_project 8 94940022 94944457 - 9330175E14Rik lincRNA lincRNA MGP_CASTEiJ_T0008933.1 MGP_CASTEiJ_G0007193.1 mouse_genomes_project 8 94943301 94945283 - 9330175E14Rik lincRNA lincRNA MGP_CASTEiJ_T0015349.1 MGP_CASTEiJ_G0013512.1 mouse_genomes_project 8 16769609 16770446 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090200.1 MGP_CASTEiJ_G0032991.1 mouse_genomes_project 8 95432731 95447948 - MGP_CASTEiJ_P0090200 Ccdc102a protein_coding protein_coding MGP_CASTEiJ_T0090201.1 MGP_CASTEiJ_G0032991.1 mouse_genomes_project 8 95443418 95447370 - MGP_CASTEiJ_P0090201 Ccdc102a protein_coding protein_coding MGP_CASTEiJ_T0089146.1 MGP_CASTEiJ_G0032669.1 mouse_genomes_project 8 66781129 66782476 + MGP_CASTEiJ_P0089146 Nat1 protein_coding protein_coding MGP_CASTEiJ_T0100070.1 MGP_CASTEiJ_G0036983.1 mouse_genomes_project 8 64889474 64889581 - Gm23515 snRNA snRNA MGP_CASTEiJ_T0008866.1 MGP_CASTEiJ_G0007146.1 mouse_genomes_project 8 45942718 46106468 - lincRNA lincRNA MGP_CASTEiJ_T0017709.1 MGP_CASTEiJ_G0015030.1 mouse_genomes_project 8 47625461 47654519 + Gm19744 processed_transcript lincRNA MGP_CASTEiJ_T0017710.1 MGP_CASTEiJ_G0015030.1 mouse_genomes_project 8 47625518 47629330 + Gm19744 processed_transcript lincRNA MGP_CASTEiJ_T0017711.1 MGP_CASTEiJ_G0015030.1 mouse_genomes_project 8 47625615 47626928 + Gm19744 processed_transcript antisense MGP_CASTEiJ_T0017712.1 MGP_CASTEiJ_G0015030.1 mouse_genomes_project 8 47625859 47626333 + Gm19744 processed_transcript retained_intron MGP_CASTEiJ_T0017713.1 MGP_CASTEiJ_G0015030.1 mouse_genomes_project 8 47625921 47626427 + Gm19744 processed_transcript antisense MGP_CASTEiJ_T0017714.1 MGP_CASTEiJ_G0015030.1 mouse_genomes_project 8 47638329 47655404 + Gm19744 processed_transcript lincRNA MGP_CASTEiJ_T0090488.1 MGP_CASTEiJ_G0033105.1 mouse_genomes_project 8 108383397 108385885 - MGP_CASTEiJ_P0090488 Pdf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090491.1 MGP_CASTEiJ_G0033105.1 mouse_genomes_project 8 108385217 108388598 - MGP_CASTEiJ_P0090491 Pdf protein_coding protein_coding MGP_CASTEiJ_T0089583.1 MGP_CASTEiJ_G0032802.1 mouse_genomes_project 8 72227286 72296014 + MGP_CASTEiJ_P0089583 Nwd1 protein_coding protein_coding MGP_CASTEiJ_T0089584.1 MGP_CASTEiJ_G0032802.1 mouse_genomes_project 8 72227726 72276186 + MGP_CASTEiJ_P0089584 Nwd1 protein_coding protein_coding MGP_CASTEiJ_T0089585.1 MGP_CASTEiJ_G0032802.1 mouse_genomes_project 8 72227737 72290309 + MGP_CASTEiJ_P0089585 Nwd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089586.1 MGP_CASTEiJ_G0032802.1 mouse_genomes_project 8 72227786 72298904 + MGP_CASTEiJ_P0089586 Nwd1 protein_coding protein_coding MGP_CASTEiJ_T0089587.1 MGP_CASTEiJ_G0032802.1 mouse_genomes_project 8 72236973 72290379 + MGP_CASTEiJ_P0089587 Nwd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089588.1 MGP_CASTEiJ_G0032802.1 mouse_genomes_project 8 72240573 72290340 + MGP_CASTEiJ_P0089588 Nwd1 protein_coding protein_coding MGP_CASTEiJ_T0089589.1 MGP_CASTEiJ_G0032802.1 mouse_genomes_project 8 72264322 72275591 + Nwd1 protein_coding processed_transcript MGP_CASTEiJ_T0089527.1 MGP_CASTEiJ_G0032778.1 mouse_genomes_project 8 71470397 71491236 + MGP_CASTEiJ_P0089527 Zfp709 protein_coding protein_coding MGP_CASTEiJ_T0089528.1 MGP_CASTEiJ_G0032778.1 mouse_genomes_project 8 71470459 71480907 + MGP_CASTEiJ_P0089528 Zfp709 protein_coding protein_coding MGP_CASTEiJ_T0089529.1 MGP_CASTEiJ_G0032778.1 mouse_genomes_project 8 71470745 71471112 + Zfp709 protein_coding processed_transcript MGP_CASTEiJ_T0088419.1 MGP_CASTEiJ_G0032424.1 mouse_genomes_project 8 16417066 16421900 - MGP_CASTEiJ_P0088419 Defb37 protein_coding protein_coding MGP_CASTEiJ_T0008848.1 MGP_CASTEiJ_G0007132.1 mouse_genomes_project 8 25386244 25405770 + Gm1698 lincRNA lincRNA MGP_CASTEiJ_T0015400.1 MGP_CASTEiJ_G0013563.1 mouse_genomes_project 8 98182960 98183950 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090084.1 MGP_CASTEiJ_G0032953.1 mouse_genomes_project 8 93245082 93273704 + MGP_CASTEiJ_P0090084 Mmp2 protein_coding protein_coding MGP_CASTEiJ_T0089608.1 MGP_CASTEiJ_G0032809.1 mouse_genomes_project 8 74631682 74638705 + MGP_CASTEiJ_P0089608 Hmox1 protein_coding protein_coding MGP_CASTEiJ_T0089609.1 MGP_CASTEiJ_G0032809.1 mouse_genomes_project 8 74631732 74634561 + Hmox1 protein_coding retained_intron MGP_CASTEiJ_T0089610.1 MGP_CASTEiJ_G0032809.1 mouse_genomes_project 8 74631941 74635314 + MGP_CASTEiJ_P0089610 Hmox1 protein_coding protein_coding MGP_CASTEiJ_T0091066.1 MGP_CASTEiJ_G0033269.1 mouse_genomes_project 8 126166723 126194963 + MGP_CASTEiJ_P0091066 Afg3l1 protein_coding protein_coding MGP_CASTEiJ_T0091067.1 MGP_CASTEiJ_G0033269.1 mouse_genomes_project 8 126166723 126194963 + MGP_CASTEiJ_P0091067 Afg3l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091068.1 MGP_CASTEiJ_G0033269.1 mouse_genomes_project 8 126166760 126172699 + Afg3l1 protein_coding retained_intron MGP_CASTEiJ_T0091069.1 MGP_CASTEiJ_G0033269.1 mouse_genomes_project 8 126171770 126181318 + Afg3l1 protein_coding processed_transcript MGP_CASTEiJ_T0091070.1 MGP_CASTEiJ_G0033269.1 mouse_genomes_project 8 126184340 126190003 + Afg3l1 protein_coding retained_intron MGP_CASTEiJ_T0091071.1 MGP_CASTEiJ_G0033269.1 mouse_genomes_project 8 126192144 126192670 + Afg3l1 protein_coding retained_intron MGP_CASTEiJ_T0088523.1 MGP_CASTEiJ_G0032481.1 mouse_genomes_project 8 20747774 20768791 - MGP_CASTEiJ_P0088523 Golga7 protein_coding protein_coding MGP_CASTEiJ_T0091072.1 MGP_CASTEiJ_G0033270.1 mouse_genomes_project 8 126195766 126206545 - MGP_CASTEiJ_P0091072 Dbndd1 protein_coding protein_coding MGP_CASTEiJ_T0091073.1 MGP_CASTEiJ_G0033270.1 mouse_genomes_project 8 126196731 126206553 - MGP_CASTEiJ_P0091073 Dbndd1 protein_coding protein_coding MGP_CASTEiJ_T0091074.1 MGP_CASTEiJ_G0033270.1 mouse_genomes_project 8 126196732 126206480 - MGP_CASTEiJ_P0091074 Dbndd1 protein_coding protein_coding MGP_CASTEiJ_T0005226.1 MGP_CASTEiJ_G0004439.1 mouse_genomes_project 8 67690436 67694302 + 1700125H03Rik antisense antisense MGP_CASTEiJ_T0005227.1 MGP_CASTEiJ_G0004439.1 mouse_genomes_project 8 67690468 67697771 + 1700125H03Rik antisense antisense MGP_CASTEiJ_T0088564.1 MGP_CASTEiJ_G0032492.1 mouse_genomes_project 8 22496476 22568504 - MGP_CASTEiJ_P0088564 Adam9 protein_coding protein_coding MGP_CASTEiJ_T0011383.1 MGP_CASTEiJ_G0009571.1 mouse_genomes_project 8 23294962 23295284 + Gm23094 misc_RNA misc_RNA MGP_CASTEiJ_T0088590.1 MGP_CASTEiJ_G0032498.1 mouse_genomes_project 8 23182663 23205139 - MGP_CASTEiJ_P0088590 Letm2 protein_coding protein_coding MGP_CASTEiJ_T0091208.1 MGP_CASTEiJ_G0033313.1 mouse_genomes_project 8 132058758 132076008 + MGP_CASTEiJ_P0091208 protein_coding protein_coding MGP_CASTEiJ_T0089381.1 MGP_CASTEiJ_G0032734.1 mouse_genomes_project 8 70173502 70174045 - MGP_CASTEiJ_P0089381 protein_coding protein_coding MGP_CASTEiJ_T0089979.1 MGP_CASTEiJ_G0032923.1 mouse_genomes_project 8 85906446 85947991 + Phkb protein_coding processed_transcript MGP_CASTEiJ_T0089980.1 MGP_CASTEiJ_G0032923.1 mouse_genomes_project 8 85906478 85993278 + MGP_CASTEiJ_P0089980 Phkb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089981.1 MGP_CASTEiJ_G0032923.1 mouse_genomes_project 8 85906489 86123911 + MGP_CASTEiJ_P0089981 Phkb protein_coding protein_coding MGP_CASTEiJ_T0089982.1 MGP_CASTEiJ_G0032923.1 mouse_genomes_project 8 85906495 85979303 + Phkb protein_coding processed_transcript MGP_CASTEiJ_T0089983.1 MGP_CASTEiJ_G0032923.1 mouse_genomes_project 8 85906503 85979037 + MGP_CASTEiJ_P0089983 Phkb protein_coding protein_coding MGP_CASTEiJ_T0089984.1 MGP_CASTEiJ_G0032923.1 mouse_genomes_project 8 85908276 85960173 + MGP_CASTEiJ_P0089984 Phkb protein_coding protein_coding MGP_CASTEiJ_T0089985.1 MGP_CASTEiJ_G0032923.1 mouse_genomes_project 8 85908540 85948078 + MGP_CASTEiJ_P0089985 Phkb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089986.1 MGP_CASTEiJ_G0032923.1 mouse_genomes_project 8 86068637 86084439 + MGP_CASTEiJ_P0089986 Phkb protein_coding protein_coding MGP_CASTEiJ_T0089987.1 MGP_CASTEiJ_G0032923.1 mouse_genomes_project 8 86089638 86123142 + Phkb protein_coding processed_transcript MGP_CASTEiJ_T0089644.1 MGP_CASTEiJ_G0032823.1 mouse_genomes_project 8 78220623 78451063 + MGP_CASTEiJ_P0089644 Slc10a7 protein_coding protein_coding MGP_CASTEiJ_T0008878.1 MGP_CASTEiJ_G0007157.1 mouse_genomes_project 8 71717988 71721432 - Gm26586 lincRNA lincRNA MGP_CASTEiJ_T0008868.1 MGP_CASTEiJ_G0007148.1 mouse_genomes_project 8 56298253 56306399 + lincRNA lincRNA MGP_CASTEiJ_T0089203.1 MGP_CASTEiJ_G0032685.1 mouse_genomes_project 8 69060698 69070737 + Zfp964 protein_coding retained_intron MGP_CASTEiJ_T0089204.1 MGP_CASTEiJ_G0032685.1 mouse_genomes_project 8 69060711 69074830 + MGP_CASTEiJ_P0089204 Zfp964 protein_coding protein_coding MGP_CASTEiJ_T0089205.1 MGP_CASTEiJ_G0032685.1 mouse_genomes_project 8 69067117 69072018 + MGP_CASTEiJ_P0089205 Zfp964 protein_coding protein_coding MGP_CASTEiJ_T0090091.1 MGP_CASTEiJ_G0032957.1 mouse_genomes_project 8 93451750 93479964 - MGP_CASTEiJ_P0090091 Ces1a protein_coding protein_coding MGP_CASTEiJ_T0005266.1 MGP_CASTEiJ_G0004474.1 mouse_genomes_project 8 128676388 128691442 + A730098A19Rik antisense antisense MGP_CASTEiJ_T0088641.1 MGP_CASTEiJ_G0032513.1 mouse_genomes_project 8 23798519 23803302 + MGP_CASTEiJ_P0088641 Thap1 protein_coding protein_coding MGP_CASTEiJ_T0088642.1 MGP_CASTEiJ_G0032513.1 mouse_genomes_project 8 23798540 23803138 + MGP_CASTEiJ_P0088642 Thap1 protein_coding protein_coding MGP_CASTEiJ_T0088643.1 MGP_CASTEiJ_G0032513.1 mouse_genomes_project 8 23798562 23799720 + Thap1 protein_coding retained_intron MGP_CASTEiJ_T0088644.1 MGP_CASTEiJ_G0032513.1 mouse_genomes_project 8 23798698 23803305 + MGP_CASTEiJ_P0088644 Thap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091122.1 MGP_CASTEiJ_G0033287.1 mouse_genomes_project 8 127421855 127434655 + MGP_CASTEiJ_P0091122 Arv1 protein_coding protein_coding MGP_CASTEiJ_T0005185.1 MGP_CASTEiJ_G0004407.1 mouse_genomes_project 8 8232181 8248933 + Gm15418 antisense antisense MGP_CASTEiJ_T0098656.1 MGP_CASTEiJ_G0035587.1 mouse_genomes_project 8 6487185 6487303 - n-R5s95 rRNA rRNA MGP_CASTEiJ_T0101314.1 MGP_CASTEiJ_G0038227.1 mouse_genomes_project 8 62239689 62239822 - Gm24236 snoRNA snoRNA MGP_CASTEiJ_T0088429.1 MGP_CASTEiJ_G0032433.1 mouse_genomes_project 8 16643598 16646348 + MGP_CASTEiJ_P0088429 Defb6 protein_coding protein_coding MGP_CASTEiJ_T0011395.1 MGP_CASTEiJ_G0009583.1 mouse_genomes_project 8 107348392 107348651 - Gm27956 misc_RNA misc_RNA MGP_CASTEiJ_T0011389.1 MGP_CASTEiJ_G0009577.1 mouse_genomes_project 8 79750730 79750905 + Gm27820 misc_RNA misc_RNA MGP_CASTEiJ_T0010691.1 MGP_CASTEiJ_G0008879.1 mouse_genomes_project 8 96305410 96305474 - Mir7073 miRNA miRNA MGP_CASTEiJ_T0088993.1 MGP_CASTEiJ_G0032624.1 mouse_genomes_project 8 53231771 53346718 + MGP_CASTEiJ_P0088993 Vegfc protein_coding protein_coding MGP_CASTEiJ_T0005229.1 MGP_CASTEiJ_G0004441.1 mouse_genomes_project 8 68458141 68459229 + antisense antisense MGP_CASTEiJ_T0088351.1 MGP_CASTEiJ_G0032404.1 mouse_genomes_project 8 11126501 11145093 + MGP_CASTEiJ_P0088351 Champ1 protein_coding protein_coding MGP_CASTEiJ_T0088352.1 MGP_CASTEiJ_G0032404.1 mouse_genomes_project 8 11126564 11143262 + MGP_CASTEiJ_P0088352 Champ1 protein_coding protein_coding MGP_CASTEiJ_T0089377.1 MGP_CASTEiJ_G0032732.1 mouse_genomes_project 8 70146905 70152393 + MGP_CASTEiJ_P0089377 Lsm4 protein_coding protein_coding MGP_CASTEiJ_T0089378.1 MGP_CASTEiJ_G0032732.1 mouse_genomes_project 8 70147075 70151689 + MGP_CASTEiJ_P0089378 Lsm4 protein_coding protein_coding MGP_CASTEiJ_T0089379.1 MGP_CASTEiJ_G0032732.1 mouse_genomes_project 8 70151305 70151757 + Lsm4 protein_coding retained_intron MGP_CASTEiJ_T0089029.1 MGP_CASTEiJ_G0032638.1 mouse_genomes_project 8 56516443 56650056 - MGP_CASTEiJ_P0089029 Galnt7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0089030.1 MGP_CASTEiJ_G0032638.1 mouse_genomes_project 8 56516448 56650093 - MGP_CASTEiJ_P0089030 Galnt7 protein_coding protein_coding MGP_CASTEiJ_T0089031.1 MGP_CASTEiJ_G0032638.1 mouse_genomes_project 8 56517318 56650093 - MGP_CASTEiJ_P0089031 Galnt7 protein_coding protein_coding MGP_CASTEiJ_T0089032.1 MGP_CASTEiJ_G0032638.1 mouse_genomes_project 8 56518650 56531051 - Galnt7 protein_coding processed_transcript MGP_CASTEiJ_T0089033.1 MGP_CASTEiJ_G0032638.1 mouse_genomes_project 8 56534763 56650037 - Galnt7 protein_coding retained_intron MGP_CASTEiJ_T0090166.1 MGP_CASTEiJ_G0032980.1 mouse_genomes_project 8 95079091 95107212 - MGP_CASTEiJ_P0090166 Fam192a protein_coding protein_coding MGP_CASTEiJ_T0090040.1 MGP_CASTEiJ_G0032939.1 mouse_genomes_project 8 88795121 88840070 + MGP_CASTEiJ_P0090040 Nod2 protein_coding protein_coding MGP_CASTEiJ_T0090041.1 MGP_CASTEiJ_G0032939.1 mouse_genomes_project 8 88795121 88840070 + MGP_CASTEiJ_P0090041 Nod2 protein_coding protein_coding MGP_CASTEiJ_T0090042.1 MGP_CASTEiJ_G0032939.1 mouse_genomes_project 8 88795190 88816115 + Nod2 protein_coding retained_intron MGP_CASTEiJ_T0090043.1 MGP_CASTEiJ_G0032939.1 mouse_genomes_project 8 88799191 88840070 + MGP_CASTEiJ_P0090043 Nod2 protein_coding protein_coding MGP_CASTEiJ_T0089569.1 MGP_CASTEiJ_G0032794.1 mouse_genomes_project 8 71926179 72008399 - MGP_CASTEiJ_P0089569 Eps15l1 protein_coding protein_coding MGP_CASTEiJ_T0088456.1 MGP_CASTEiJ_G0032458.1 mouse_genomes_project 8 19428986 19500260 - MGP_CASTEiJ_P0088456 Atp7b protein_coding protein_coding MGP_CASTEiJ_T0088457.1 MGP_CASTEiJ_G0032458.1 mouse_genomes_project 8 19430846 19499975 - MGP_CASTEiJ_P0088457 Atp7b protein_coding protein_coding MGP_CASTEiJ_T0101344.1 MGP_CASTEiJ_G0038257.1 mouse_genomes_project 8 121028183 121028268 + Gm22999 snoRNA snoRNA MGP_CASTEiJ_T0090568.1 MGP_CASTEiJ_G0033129.1 mouse_genomes_project 8 111576768 111588082 - MGP_CASTEiJ_P0090568 Chst4 protein_coding protein_coding MGP_CASTEiJ_T0010664.1 MGP_CASTEiJ_G0008852.1 mouse_genomes_project 8 72059682 72059756 - Mir7068 miRNA miRNA MGP_CASTEiJ_T0090179.1 MGP_CASTEiJ_G0032986.1 mouse_genomes_project 8 95332953 95334536 + MGP_CASTEiJ_P0090179 Ccl17 protein_coding protein_coding MGP_CASTEiJ_T0089546.1 MGP_CASTEiJ_G0032781.1 mouse_genomes_project 8 71588342 71609165 - MGP_CASTEiJ_P0089546 Cyp4f18 protein_coding protein_coding MGP_CASTEiJ_T0089547.1 MGP_CASTEiJ_G0032781.1 mouse_genomes_project 8 71588343 71592776 - Cyp4f18 protein_coding processed_transcript MGP_CASTEiJ_T0089548.1 MGP_CASTEiJ_G0032781.1 mouse_genomes_project 8 71589415 71593092 - Cyp4f18 protein_coding processed_transcript MGP_CASTEiJ_T0090401.1 MGP_CASTEiJ_G0033066.1 mouse_genomes_project 8 106925964 106928923 - MGP_CASTEiJ_P0090401 Acd protein_coding protein_coding MGP_CASTEiJ_T0090223.1 MGP_CASTEiJ_G0032999.1 mouse_genomes_project 8 95851949 95854534 + MGP_CASTEiJ_P0090223 Tepp protein_coding protein_coding MGP_CASTEiJ_T0090224.1 MGP_CASTEiJ_G0032999.1 mouse_genomes_project 8 95851969 95861987 + MGP_CASTEiJ_P0090224 Tepp protein_coding protein_coding MGP_CASTEiJ_T0090225.1 MGP_CASTEiJ_G0032999.1 mouse_genomes_project 8 95852981 95862773 + MGP_CASTEiJ_P0090225 Tepp protein_coding protein_coding MGP_CASTEiJ_T0090226.1 MGP_CASTEiJ_G0032999.1 mouse_genomes_project 8 95852985 95862773 + MGP_CASTEiJ_P0090226 Tepp protein_coding protein_coding MGP_CASTEiJ_T0090227.1 MGP_CASTEiJ_G0032999.1 mouse_genomes_project 8 95861881 95867767 + Tepp protein_coding retained_intron MGP_CASTEiJ_T0090228.1 MGP_CASTEiJ_G0032999.1 mouse_genomes_project 8 95861939 95867655 + MGP_CASTEiJ_P0090228 Tepp protein_coding protein_coding MGP_CASTEiJ_T0090703.1 MGP_CASTEiJ_G0033173.1 mouse_genomes_project 8 116339845 117341255 + MGP_CASTEiJ_P0090703 Wwox protein_coding protein_coding MGP_CASTEiJ_T0090704.1 MGP_CASTEiJ_G0033173.1 mouse_genomes_project 8 116339885 116645517 + MGP_CASTEiJ_P0090704 Wwox protein_coding protein_coding MGP_CASTEiJ_T0090705.1 MGP_CASTEiJ_G0033173.1 mouse_genomes_project 8 116339885 116813812 + MGP_CASTEiJ_P0090705 Wwox protein_coding protein_coding MGP_CASTEiJ_T0090706.1 MGP_CASTEiJ_G0033173.1 mouse_genomes_project 8 116339892 116353977 + Wwox protein_coding processed_transcript MGP_CASTEiJ_T0090707.1 MGP_CASTEiJ_G0033173.1 mouse_genomes_project 8 116339892 116375196 + MGP_CASTEiJ_P0090707 Wwox protein_coding protein_coding MGP_CASTEiJ_T0090708.1 MGP_CASTEiJ_G0033173.1 mouse_genomes_project 8 116348400 116419953 + Wwox protein_coding processed_transcript MGP_CASTEiJ_T0090709.1 MGP_CASTEiJ_G0033173.1 mouse_genomes_project 8 116520457 116633155 + Wwox protein_coding processed_transcript MGP_CASTEiJ_T0090710.1 MGP_CASTEiJ_G0033173.1 mouse_genomes_project 8 116638978 116981157 + Wwox protein_coding processed_transcript MGP_CASTEiJ_T0090711.1 MGP_CASTEiJ_G0033173.1 mouse_genomes_project 8 116638978 117340689 + Wwox protein_coding processed_transcript MGP_CASTEiJ_T0088647.1 MGP_CASTEiJ_G0032515.1 mouse_genomes_project 8 24750815 24763629 + MGP_CASTEiJ_P0088647 Erlin2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088975.1 MGP_CASTEiJ_G0032620.1 mouse_genomes_project 8 46967848 47173385 - MGP_CASTEiJ_P0088975 Tenm3 protein_coding protein_coding MGP_CASTEiJ_T0088976.1 MGP_CASTEiJ_G0032620.1 mouse_genomes_project 8 46969862 47625845 - MGP_CASTEiJ_P0088976 Tenm3 protein_coding protein_coding MGP_CASTEiJ_T0088977.1 MGP_CASTEiJ_G0032620.1 mouse_genomes_project 8 46969885 47441435 - MGP_CASTEiJ_P0088977 Tenm3 protein_coding protein_coding MGP_CASTEiJ_T0088978.1 MGP_CASTEiJ_G0032620.1 mouse_genomes_project 8 47017044 47041351 - Tenm3 protein_coding processed_transcript MGP_CASTEiJ_T0088979.1 MGP_CASTEiJ_G0032620.1 mouse_genomes_project 8 47079887 47311468 - MGP_CASTEiJ_P0088979 Tenm3 protein_coding protein_coding MGP_CASTEiJ_T0088980.1 MGP_CASTEiJ_G0032620.1 mouse_genomes_project 8 47142405 47311811 - MGP_CASTEiJ_P0088980 Tenm3 protein_coding protein_coding MGP_CASTEiJ_T0088981.1 MGP_CASTEiJ_G0032620.1 mouse_genomes_project 8 47142405 47311618 - MGP_CASTEiJ_P0088981 Tenm3 protein_coding protein_coding MGP_CASTEiJ_T0088207.1 MGP_CASTEiJ_G0032364.1 mouse_genomes_project 8 6954404 6985514 + MGP_CASTEiJ_P0088207 Tnfsf13b protein_coding protein_coding MGP_CASTEiJ_T0101311.1 MGP_CASTEiJ_G0038224.1 mouse_genomes_project 8 56544785 56544899 + Gm25379 snoRNA snoRNA MGP_CASTEiJ_T0010661.1 MGP_CASTEiJ_G0008849.1 mouse_genomes_project 8 70386779 70386842 - Mir7067 miRNA miRNA MGP_CASTEiJ_T0010670.1 MGP_CASTEiJ_G0008858.1 mouse_genomes_project 8 83901874 83902017 - Gm44330 miRNA miRNA MGP_CASTEiJ_T0090459.1 MGP_CASTEiJ_G0033091.1 mouse_genomes_project 8 107484695 107497159 - MGP_CASTEiJ_P0090459 Slc7a6os protein_coding unknown_likely_coding MGP_CASTEiJ_T0088197.1 MGP_CASTEiJ_G0032357.1 mouse_genomes_project 8 1921101 1940714 - MGP_CASTEiJ_P0088197 Slc10a2 protein_coding protein_coding MGP_CASTEiJ_T0089106.1 MGP_CASTEiJ_G0032655.1 mouse_genomes_project 8 63826811 63938387 - MGP_CASTEiJ_P0089106 Cpe protein_coding unknown_likely_coding MGP_CASTEiJ_T0089107.1 MGP_CASTEiJ_G0032655.1 mouse_genomes_project 8 63826830 63938498 - MGP_CASTEiJ_P0089107 Cpe protein_coding protein_coding MGP_CASTEiJ_T0090048.1 MGP_CASTEiJ_G0032942.1 mouse_genomes_project 8 89372695 89373413 - MGP_CASTEiJ_P0090048 protein_coding protein_coding MGP_CASTEiJ_T0015363.1 MGP_CASTEiJ_G0013526.1 mouse_genomes_project 8 36324089 36327743 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098404.1 MGP_CASTEiJ_G0035335.1 mouse_genomes_project 8 33009015 33010170 + pseudogene pseudogene MGP_CASTEiJ_T0089117.1 MGP_CASTEiJ_G0032658.1 mouse_genomes_project 8 64205384 64226799 + MGP_CASTEiJ_P0089117 Tmem192 protein_coding protein_coding MGP_CASTEiJ_T0089118.1 MGP_CASTEiJ_G0032658.1 mouse_genomes_project 8 64205384 64226799 + MGP_CASTEiJ_P0089118 Tmem192 protein_coding protein_coding MGP_CASTEiJ_T0090112.1 MGP_CASTEiJ_G0032963.1 mouse_genomes_project 8 93743590 93787859 - MGP_CASTEiJ_P0090112 Ces1g protein_coding protein_coding MGP_CASTEiJ_T0101288.1 MGP_CASTEiJ_G0038201.1 mouse_genomes_project 8 11562852 11562983 - Gm26184 snoRNA snoRNA MGP_CASTEiJ_T0015397.1 MGP_CASTEiJ_G0013560.1 mouse_genomes_project 8 86978591 86979164 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091032.1 MGP_CASTEiJ_G0033262.1 mouse_genomes_project 8 125915256 125946735 + MGP_CASTEiJ_P0091032 Zfp276 protein_coding protein_coding MGP_CASTEiJ_T0091033.1 MGP_CASTEiJ_G0033262.1 mouse_genomes_project 8 125915332 125918696 + Zfp276 protein_coding retained_intron MGP_CASTEiJ_T0091034.1 MGP_CASTEiJ_G0033262.1 mouse_genomes_project 8 125915345 125946733 + Zfp276 protein_coding retained_intron MGP_CASTEiJ_T0091035.1 MGP_CASTEiJ_G0033262.1 mouse_genomes_project 8 125915747 125934649 + MGP_CASTEiJ_P0091035 Zfp276 protein_coding protein_coding MGP_CASTEiJ_T0091036.1 MGP_CASTEiJ_G0033262.1 mouse_genomes_project 8 125915777 125921006 + MGP_CASTEiJ_P0091036 Zfp276 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091037.1 MGP_CASTEiJ_G0033262.1 mouse_genomes_project 8 125919375 125945123 + Zfp276 protein_coding retained_intron MGP_CASTEiJ_T0091038.1 MGP_CASTEiJ_G0033262.1 mouse_genomes_project 8 125920508 125944918 + Zfp276 protein_coding retained_intron MGP_CASTEiJ_T0091041.1 MGP_CASTEiJ_G0033262.1 mouse_genomes_project 8 125934399 125935222 + Zfp276 protein_coding retained_intron MGP_CASTEiJ_T0010720.1 MGP_CASTEiJ_G0008908.1 mouse_genomes_project 8 131223109 131223187 - Mir21c miRNA miRNA MGP_CASTEiJ_T0089853.1 MGP_CASTEiJ_G0032886.1 mouse_genomes_project 8 84843191 84851038 - MGP_CASTEiJ_P0089853 Dand5 protein_coding protein_coding MGP_CASTEiJ_T0005263.1 MGP_CASTEiJ_G0004471.1 mouse_genomes_project 8 126966057 126967433 - 1810008B01Rik antisense antisense MGP_CASTEiJ_T0090409.1 MGP_CASTEiJ_G0033071.1 mouse_genomes_project 8 107005522 107075691 - MGP_CASTEiJ_P0090409 Ranbp10 protein_coding protein_coding MGP_CASTEiJ_T0088245.1 MGP_CASTEiJ_G0032379.1 mouse_genomes_project 8 9712126 9731696 - MGP_CASTEiJ_P0088245 protein_coding protein_coding MGP_CASTEiJ_T0002253.1 MGP_CASTEiJ_G0002172.1 mouse_genomes_project 8 1368004 1368219 - TEC TEC MGP_CASTEiJ_T0089855.1 MGP_CASTEiJ_G0032888.1 mouse_genomes_project 8 84864447 84868485 - MGP_CASTEiJ_P0089855 Rad23a protein_coding protein_coding MGP_CASTEiJ_T0089856.1 MGP_CASTEiJ_G0032888.1 mouse_genomes_project 8 84865080 84871078 - MGP_CASTEiJ_P0089856 Rad23a protein_coding protein_coding MGP_CASTEiJ_T0089857.1 MGP_CASTEiJ_G0032888.1 mouse_genomes_project 8 84865339 84871102 - MGP_CASTEiJ_P0089857 Rad23a protein_coding protein_coding MGP_CASTEiJ_T0089858.1 MGP_CASTEiJ_G0032888.1 mouse_genomes_project 8 84866057 84871102 - MGP_CASTEiJ_P0089858 Rad23a protein_coding protein_coding MGP_CASTEiJ_T0089859.1 MGP_CASTEiJ_G0032888.1 mouse_genomes_project 8 84868159 84869104 - Rad23a protein_coding retained_intron MGP_CASTEiJ_T0089860.1 MGP_CASTEiJ_G0032888.1 mouse_genomes_project 8 84868172 84869118 - Rad23a protein_coding retained_intron MGP_CASTEiJ_T0089861.1 MGP_CASTEiJ_G0032888.1 mouse_genomes_project 8 84868736 84871073 - Rad23a protein_coding retained_intron MGP_CASTEiJ_T0100067.1 MGP_CASTEiJ_G0036980.1 mouse_genomes_project 8 52598184 52598246 + Gm22841 snRNA snRNA MGP_CASTEiJ_T0090098.1 MGP_CASTEiJ_G0032960.1 mouse_genomes_project 8 93603452 93640740 - MGP_CASTEiJ_P0090098 Ces1d protein_coding protein_coding MGP_CASTEiJ_T0090099.1 MGP_CASTEiJ_G0032960.1 mouse_genomes_project 8 93603687 93606906 - Ces1d protein_coding processed_transcript MGP_CASTEiJ_T0090100.1 MGP_CASTEiJ_G0032960.1 mouse_genomes_project 8 93603713 93614064 - Ces1d protein_coding processed_transcript MGP_CASTEiJ_T0090101.1 MGP_CASTEiJ_G0032960.1 mouse_genomes_project 8 93637705 93640679 - Ces1d protein_coding processed_transcript MGP_CASTEiJ_T0090784.1 MGP_CASTEiJ_G0033203.1 mouse_genomes_project 8 122073218 122138444 + MGP_CASTEiJ_P0090784 Atp2c2 protein_coding protein_coding MGP_CASTEiJ_T0088355.1 MGP_CASTEiJ_G0032407.1 mouse_genomes_project 8 11170318 11204198 + MGP_CASTEiJ_P0088355 Fbxo25 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088356.1 MGP_CASTEiJ_G0032407.1 mouse_genomes_project 8 11170339 11201303 + MGP_CASTEiJ_P0088356 Fbxo25 protein_coding protein_coding MGP_CASTEiJ_T0090391.1 MGP_CASTEiJ_G0033063.1 mouse_genomes_project 8 106828668 106845394 + MGP_CASTEiJ_P0090391 Fam65a protein_coding protein_coding MGP_CASTEiJ_T0089845.1 MGP_CASTEiJ_G0032884.1 mouse_genomes_project 8 84722455 84725695 + MGP_CASTEiJ_P0089845 Lyl1 protein_coding protein_coding MGP_CASTEiJ_T0088421.1 MGP_CASTEiJ_G0032426.1 mouse_genomes_project 8 16487820 16494899 - MGP_CASTEiJ_P0088421 Defb39 protein_coding protein_coding MGP_CASTEiJ_T0089976.1 MGP_CASTEiJ_G0032921.1 mouse_genomes_project 8 85688400 85759875 - MGP_CASTEiJ_P0089976 Neto2 protein_coding protein_coding MGP_CASTEiJ_T0089977.1 MGP_CASTEiJ_G0032921.1 mouse_genomes_project 8 85688404 85759876 - MGP_CASTEiJ_P0089977 Neto2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090534.1 MGP_CASTEiJ_G0033119.1 mouse_genomes_project 8 111081976 111090148 + MGP_CASTEiJ_P0090534 Txnl4b protein_coding protein_coding MGP_CASTEiJ_T0090535.1 MGP_CASTEiJ_G0033119.1 mouse_genomes_project 8 111084981 111089618 + MGP_CASTEiJ_P0090535 Txnl4b protein_coding protein_coding MGP_CASTEiJ_T0088332.1 MGP_CASTEiJ_G0032398.1 mouse_genomes_project 8 10680327 10710089 - MGP_CASTEiJ_P0088332 Gas6 protein_coding protein_coding MGP_CASTEiJ_T0088328.1 MGP_CASTEiJ_G0032395.1 mouse_genomes_project 8 10599784 10608510 - MGP_CASTEiJ_P0088328 Atp4b protein_coding protein_coding MGP_CASTEiJ_T0098667.1 MGP_CASTEiJ_G0035598.1 mouse_genomes_project 8 130507826 130507944 + Gm22968 rRNA rRNA MGP_CASTEiJ_T0008883.1 MGP_CASTEiJ_G0007161.1 mouse_genomes_project 8 79030074 79042608 + Gm4890 lincRNA lincRNA MGP_CASTEiJ_T0100071.1 MGP_CASTEiJ_G0036984.1 mouse_genomes_project 8 66494771 66494895 - Gm24274 snRNA snRNA MGP_CASTEiJ_T0089419.1 MGP_CASTEiJ_G0032752.1 mouse_genomes_project 8 70784232 70883732 + MGP_CASTEiJ_P0089419 Myo9b protein_coding protein_coding MGP_CASTEiJ_T0089420.1 MGP_CASTEiJ_G0032752.1 mouse_genomes_project 8 70784232 70883732 + MGP_CASTEiJ_P0089420 Myo9b protein_coding protein_coding MGP_CASTEiJ_T0089421.1 MGP_CASTEiJ_G0032752.1 mouse_genomes_project 8 70784232 70883732 + MGP_CASTEiJ_P0089421 Myo9b protein_coding protein_coding MGP_CASTEiJ_T0089422.1 MGP_CASTEiJ_G0032752.1 mouse_genomes_project 8 70784300 70853710 + MGP_CASTEiJ_P0089422 Myo9b protein_coding unknown_likely_coding MGP_CASTEiJ_T0089423.1 MGP_CASTEiJ_G0032752.1 mouse_genomes_project 8 70865857 70885489 + MGP_CASTEiJ_P0089423 Myo9b protein_coding unknown_likely_coding MGP_CASTEiJ_T0090800.1 MGP_CASTEiJ_G0033208.1 mouse_genomes_project 8 122390191 122453010 + MGP_CASTEiJ_P0090800 Crispld2 protein_coding protein_coding MGP_CASTEiJ_T0090801.1 MGP_CASTEiJ_G0033208.1 mouse_genomes_project 8 122390261 122451796 + MGP_CASTEiJ_P0090801 Crispld2 protein_coding protein_coding MGP_CASTEiJ_T0090802.1 MGP_CASTEiJ_G0033208.1 mouse_genomes_project 8 122400240 122451796 + MGP_CASTEiJ_P0090802 Crispld2 protein_coding protein_coding MGP_CASTEiJ_T0090803.1 MGP_CASTEiJ_G0033208.1 mouse_genomes_project 8 122411713 122414152 + Crispld2 protein_coding processed_transcript MGP_CASTEiJ_T0090804.1 MGP_CASTEiJ_G0033208.1 mouse_genomes_project 8 122429345 122450690 + Crispld2 protein_coding retained_intron MGP_CASTEiJ_T0100072.1 MGP_CASTEiJ_G0036985.1 mouse_genomes_project 8 71664763 71664921 - Gm25052 snRNA snRNA MGP_CASTEiJ_T0015390.1 MGP_CASTEiJ_G0013553.1 mouse_genomes_project 8 81683468 81683819 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099056.1 MGP_CASTEiJ_G0035970.1 mouse_genomes_project 8 9528191 9580981 + Gm5607 sense_overlapping sense_overlapping MGP_CASTEiJ_T0099057.1 MGP_CASTEiJ_G0035970.1 mouse_genomes_project 8 9528191 9581002 + Gm5607 sense_overlapping sense_overlapping MGP_CASTEiJ_T0089918.1 MGP_CASTEiJ_G0032900.1 mouse_genomes_project 8 85026212 85028052 - MGP_CASTEiJ_P0089918 Junb protein_coding protein_coding MGP_CASTEiJ_T0008870.1 MGP_CASTEiJ_G0007150.1 mouse_genomes_project 8 60052020 60054503 + B230317F23Rik lincRNA lincRNA MGP_CASTEiJ_T0089661.1 MGP_CASTEiJ_G0032829.1 mouse_genomes_project 8 79401582 79439507 + MGP_CASTEiJ_P0089661 Otud4 protein_coding protein_coding MGP_CASTEiJ_T0089662.1 MGP_CASTEiJ_G0032829.1 mouse_genomes_project 8 79401668 79439455 + MGP_CASTEiJ_P0089662 Otud4 protein_coding protein_coding MGP_CASTEiJ_T0089663.1 MGP_CASTEiJ_G0032829.1 mouse_genomes_project 8 79413274 79420940 + Otud4 protein_coding retained_intron MGP_CASTEiJ_T0089664.1 MGP_CASTEiJ_G0032829.1 mouse_genomes_project 8 79413675 79422973 + Otud4 protein_coding retained_intron MGP_CASTEiJ_T0089665.1 MGP_CASTEiJ_G0032829.1 mouse_genomes_project 8 79422813 79430203 + MGP_CASTEiJ_P0089665 Otud4 protein_coding protein_coding MGP_CASTEiJ_T0089666.1 MGP_CASTEiJ_G0032829.1 mouse_genomes_project 8 79428536 79433157 + MGP_CASTEiJ_P0089666 Otud4 protein_coding protein_coding MGP_CASTEiJ_T0090230.1 MGP_CASTEiJ_G0033001.1 mouse_genomes_project 8 95873772 95886356 + Usb1 protein_coding retained_intron MGP_CASTEiJ_T0090231.1 MGP_CASTEiJ_G0033001.1 mouse_genomes_project 8 95873809 95889591 + MGP_CASTEiJ_P0090231 Usb1 protein_coding protein_coding MGP_CASTEiJ_T0090232.1 MGP_CASTEiJ_G0033001.1 mouse_genomes_project 8 95887228 95888908 + Usb1 protein_coding retained_intron MGP_CASTEiJ_T0089372.1 MGP_CASTEiJ_G0032728.1 mouse_genomes_project 8 70069253 70079996 - MGP_CASTEiJ_P0089372 Ssbp4 protein_coding protein_coding MGP_CASTEiJ_T0101319.1 MGP_CASTEiJ_G0038232.1 mouse_genomes_project 8 67324485 67324616 + Gm22018 snoRNA snoRNA MGP_CASTEiJ_T0088100.1 MGP_CASTEiJ_G0032332.1 mouse_genomes_project 8 582498 594988 + MGP_CASTEiJ_P0088100 Stxbp2 protein_coding protein_coding MGP_CASTEiJ_T0088101.1 MGP_CASTEiJ_G0032332.1 mouse_genomes_project 8 582693 587024 + Stxbp2 protein_coding processed_transcript MGP_CASTEiJ_T0088102.1 MGP_CASTEiJ_G0032332.1 mouse_genomes_project 8 582694 587169 + Stxbp2 protein_coding processed_transcript MGP_CASTEiJ_T0088103.1 MGP_CASTEiJ_G0032332.1 mouse_genomes_project 8 582694 585457 + Stxbp2 protein_coding processed_transcript MGP_CASTEiJ_T0088104.1 MGP_CASTEiJ_G0032332.1 mouse_genomes_project 8 582698 586270 + Stxbp2 protein_coding retained_intron MGP_CASTEiJ_T0088105.1 MGP_CASTEiJ_G0032332.1 mouse_genomes_project 8 582706 587272 + Stxbp2 protein_coding retained_intron MGP_CASTEiJ_T0088106.1 MGP_CASTEiJ_G0032332.1 mouse_genomes_project 8 582711 594139 + MGP_CASTEiJ_P0088106 Stxbp2 protein_coding protein_coding MGP_CASTEiJ_T0088107.1 MGP_CASTEiJ_G0032332.1 mouse_genomes_project 8 584447 585599 + Stxbp2 protein_coding retained_intron MGP_CASTEiJ_T0088108.1 MGP_CASTEiJ_G0032332.1 mouse_genomes_project 8 586945 587249 + Stxbp2 protein_coding retained_intron MGP_CASTEiJ_T0088109.1 MGP_CASTEiJ_G0032332.1 mouse_genomes_project 8 588733 592352 + Stxbp2 protein_coding processed_transcript MGP_CASTEiJ_T0088110.1 MGP_CASTEiJ_G0032332.1 mouse_genomes_project 8 591155 594138 + Stxbp2 protein_coding processed_transcript MGP_CASTEiJ_T0088111.1 MGP_CASTEiJ_G0032332.1 mouse_genomes_project 8 592076 593287 + Stxbp2 protein_coding retained_intron MGP_CASTEiJ_T0088112.1 MGP_CASTEiJ_G0032332.1 mouse_genomes_project 8 592103 593372 + Stxbp2 protein_coding retained_intron MGP_CASTEiJ_T0088113.1 MGP_CASTEiJ_G0032332.1 mouse_genomes_project 8 592176 594132 + Stxbp2 protein_coding retained_intron MGP_CASTEiJ_T0088114.1 MGP_CASTEiJ_G0032332.1 mouse_genomes_project 8 592961 594139 + Stxbp2 protein_coding retained_intron MGP_CASTEiJ_T0089570.1 MGP_CASTEiJ_G0032795.1 mouse_genomes_project 8 72011085 72033355 - MGP_CASTEiJ_P0089570 Calr3 protein_coding protein_coding MGP_CASTEiJ_T0089571.1 MGP_CASTEiJ_G0032795.1 mouse_genomes_project 8 72011092 72024071 - MGP_CASTEiJ_P0089571 Calr3 protein_coding protein_coding MGP_CASTEiJ_T0008961.1 MGP_CASTEiJ_G0007215.1 mouse_genomes_project 8 123983948 123984352 + Gm26784 lincRNA lincRNA MGP_CASTEiJ_T0101315.1 MGP_CASTEiJ_G0038228.1 mouse_genomes_project 8 63061130 63061261 + Gm24580 snoRNA snoRNA MGP_CASTEiJ_T0005215.1 MGP_CASTEiJ_G0004429.1 mouse_genomes_project 8 44743861 44747336 + Gm15634 antisense antisense MGP_CASTEiJ_T0015338.1 MGP_CASTEiJ_G0013501.1 mouse_genomes_project 8 849888 852822 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015376.1 MGP_CASTEiJ_G0013539.1 mouse_genomes_project 8 72122312 72122489 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005200.1 MGP_CASTEiJ_G0004418.1 mouse_genomes_project 8 13755208 13757928 + Gm16347 antisense antisense MGP_CASTEiJ_T0005201.1 MGP_CASTEiJ_G0004418.1 mouse_genomes_project 8 13755219 13759066 + Gm16347 antisense antisense MGP_CASTEiJ_T0089590.1 MGP_CASTEiJ_G0032803.1 mouse_genomes_project 8 72307410 72344783 + MGP_CASTEiJ_P0089590 Sin3b protein_coding protein_coding MGP_CASTEiJ_T0089591.1 MGP_CASTEiJ_G0032803.1 mouse_genomes_project 8 72307410 72326703 + MGP_CASTEiJ_P0089591 Sin3b protein_coding protein_coding MGP_CASTEiJ_T0090971.1 MGP_CASTEiJ_G0033243.1 mouse_genomes_project 8 125209979 125212249 - MGP_CASTEiJ_P0090971 Aprt protein_coding protein_coding MGP_CASTEiJ_T0089891.1 MGP_CASTEiJ_G0032896.1 mouse_genomes_project 8 84956478 84970203 - Mast1 protein_coding retained_intron MGP_CASTEiJ_T0089892.1 MGP_CASTEiJ_G0032896.1 mouse_genomes_project 8 84956480 84986410 - MGP_CASTEiJ_P0089892 Mast1 protein_coding protein_coding MGP_CASTEiJ_T0089893.1 MGP_CASTEiJ_G0032896.1 mouse_genomes_project 8 84956558 84995520 - MGP_CASTEiJ_P0089893 Mast1 protein_coding protein_coding MGP_CASTEiJ_T0089895.1 MGP_CASTEiJ_G0032896.1 mouse_genomes_project 8 84965874 84973055 - Mast1 protein_coding retained_intron MGP_CASTEiJ_T0089896.1 MGP_CASTEiJ_G0032896.1 mouse_genomes_project 8 84969817 84976386 - Mast1 protein_coding retained_intron MGP_CASTEiJ_T0089897.1 MGP_CASTEiJ_G0032896.1 mouse_genomes_project 8 84983973 84986395 - Mast1 protein_coding retained_intron MGP_CASTEiJ_T0010721.1 MGP_CASTEiJ_G0008909.1 mouse_genomes_project 8 131311359 131311439 + Mir1903 miRNA miRNA MGP_CASTEiJ_T0088211.1 MGP_CASTEiJ_G0032367.1 mouse_genomes_project 8 8242891 8365664 - MGP_CASTEiJ_P0088211 Col4a1 protein_coding protein_coding MGP_CASTEiJ_T0088212.1 MGP_CASTEiJ_G0032367.1 mouse_genomes_project 8 8243978 8365495 - MGP_CASTEiJ_P0088212 Col4a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088213.1 MGP_CASTEiJ_G0032367.1 mouse_genomes_project 8 8256786 8261175 - Col4a1 protein_coding processed_transcript MGP_CASTEiJ_T0088574.1 MGP_CASTEiJ_G0032497.1 mouse_genomes_project 8 23110535 23155714 + MGP_CASTEiJ_P0088574 Fgfr1 protein_coding protein_coding MGP_CASTEiJ_T0088575.1 MGP_CASTEiJ_G0032497.1 mouse_genomes_project 8 23115680 23179888 + MGP_CASTEiJ_P0088575 Fgfr1 protein_coding protein_coding MGP_CASTEiJ_T0088576.1 MGP_CASTEiJ_G0032497.1 mouse_genomes_project 8 23115680 23179888 + MGP_CASTEiJ_P0088576 Fgfr1 protein_coding protein_coding MGP_CASTEiJ_T0088577.1 MGP_CASTEiJ_G0032497.1 mouse_genomes_project 8 23115697 23178436 + MGP_CASTEiJ_P0088577 Fgfr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088578.1 MGP_CASTEiJ_G0032497.1 mouse_genomes_project 8 23115700 23179888 + MGP_CASTEiJ_P0088578 Fgfr1 protein_coding protein_coding MGP_CASTEiJ_T0088579.1 MGP_CASTEiJ_G0032497.1 mouse_genomes_project 8 23115703 23178948 + MGP_CASTEiJ_P0088579 Fgfr1 protein_coding protein_coding MGP_CASTEiJ_T0088580.1 MGP_CASTEiJ_G0032497.1 mouse_genomes_project 8 23115803 23155804 + Fgfr1 protein_coding processed_transcript MGP_CASTEiJ_T0088581.1 MGP_CASTEiJ_G0032497.1 mouse_genomes_project 8 23116227 23178946 + MGP_CASTEiJ_P0088581 Fgfr1 protein_coding protein_coding MGP_CASTEiJ_T0088582.1 MGP_CASTEiJ_G0032497.1 mouse_genomes_project 8 23116739 23155875 + MGP_CASTEiJ_P0088582 Fgfr1 protein_coding protein_coding MGP_CASTEiJ_T0088583.1 MGP_CASTEiJ_G0032497.1 mouse_genomes_project 8 23129188 23178743 + MGP_CASTEiJ_P0088583 Fgfr1 protein_coding protein_coding MGP_CASTEiJ_T0088584.1 MGP_CASTEiJ_G0032497.1 mouse_genomes_project 8 23155762 23171651 + Fgfr1 protein_coding processed_transcript MGP_CASTEiJ_T0088585.1 MGP_CASTEiJ_G0032497.1 mouse_genomes_project 8 23158202 23165293 + Fgfr1 protein_coding retained_intron MGP_CASTEiJ_T0088586.1 MGP_CASTEiJ_G0032497.1 mouse_genomes_project 8 23164983 23178952 + Fgfr1 protein_coding retained_intron MGP_CASTEiJ_T0088587.1 MGP_CASTEiJ_G0032497.1 mouse_genomes_project 8 23168400 23178951 + Fgfr1 protein_coding retained_intron MGP_CASTEiJ_T0088588.1 MGP_CASTEiJ_G0032497.1 mouse_genomes_project 8 23170928 23176575 + Fgfr1 protein_coding retained_intron MGP_CASTEiJ_T0088589.1 MGP_CASTEiJ_G0032497.1 mouse_genomes_project 8 23171165 23176637 + Fgfr1 protein_coding retained_intron MGP_CASTEiJ_T0017730.1 MGP_CASTEiJ_G0015035.1 mouse_genomes_project 8 84877626 84878856 + 1700122E12Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017731.1 MGP_CASTEiJ_G0015035.1 mouse_genomes_project 8 84877876 84878656 + 1700122E12Rik processed_transcript processed_transcript MGP_CASTEiJ_T0089147.1 MGP_CASTEiJ_G0032670.1 mouse_genomes_project 8 66785241 66792946 + MGP_CASTEiJ_P0089147 Nat2 protein_coding protein_coding MGP_CASTEiJ_T0089148.1 MGP_CASTEiJ_G0032670.1 mouse_genomes_project 8 66785322 66792950 + MGP_CASTEiJ_P0089148 Nat2 protein_coding protein_coding MGP_CASTEiJ_T0090949.1 MGP_CASTEiJ_G0033240.1 mouse_genomes_project 8 125098376 125105432 + MGP_CASTEiJ_P0090949 Ctu2 protein_coding protein_coding MGP_CASTEiJ_T0090950.1 MGP_CASTEiJ_G0033240.1 mouse_genomes_project 8 125098405 125104027 + MGP_CASTEiJ_P0090950 Ctu2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090951.1 MGP_CASTEiJ_G0033240.1 mouse_genomes_project 8 125098427 125106476 + MGP_CASTEiJ_P0090951 Ctu2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090952.1 MGP_CASTEiJ_G0033240.1 mouse_genomes_project 8 125098431 125104017 + Ctu2 protein_coding retained_intron MGP_CASTEiJ_T0090953.1 MGP_CASTEiJ_G0033240.1 mouse_genomes_project 8 125098431 125100437 + MGP_CASTEiJ_P0090953 Ctu2 protein_coding protein_coding MGP_CASTEiJ_T0090954.1 MGP_CASTEiJ_G0033240.1 mouse_genomes_project 8 125098438 125101628 + MGP_CASTEiJ_P0090954 Ctu2 protein_coding protein_coding MGP_CASTEiJ_T0090955.1 MGP_CASTEiJ_G0033240.1 mouse_genomes_project 8 125098461 125101239 + Ctu2 protein_coding retained_intron MGP_CASTEiJ_T0090956.1 MGP_CASTEiJ_G0033240.1 mouse_genomes_project 8 125098916 125100469 + Ctu2 protein_coding retained_intron MGP_CASTEiJ_T0090957.1 MGP_CASTEiJ_G0033240.1 mouse_genomes_project 8 125103194 125104016 + Ctu2 protein_coding retained_intron MGP_CASTEiJ_T0090958.1 MGP_CASTEiJ_G0033240.1 mouse_genomes_project 8 125103229 125104020 + MGP_CASTEiJ_P0090958 Ctu2 protein_coding protein_coding MGP_CASTEiJ_T0089199.1 MGP_CASTEiJ_G0032684.1 mouse_genomes_project 8 69021775 69036473 - MGP_CASTEiJ_P0089199 Zfp868 protein_coding protein_coding MGP_CASTEiJ_T0089200.1 MGP_CASTEiJ_G0032684.1 mouse_genomes_project 8 69022332 69030282 - MGP_CASTEiJ_P0089200 Zfp868 protein_coding protein_coding MGP_CASTEiJ_T0089201.1 MGP_CASTEiJ_G0032684.1 mouse_genomes_project 8 69023338 69024967 - Zfp868 protein_coding retained_intron MGP_CASTEiJ_T0089202.1 MGP_CASTEiJ_G0032684.1 mouse_genomes_project 8 69029802 69036470 - Zfp868 protein_coding retained_intron MGP_CASTEiJ_T0088918.1 MGP_CASTEiJ_G0032602.1 mouse_genomes_project 8 45064092 45131327 + MGP_CASTEiJ_P0088918 Acsl1 protein_coding protein_coding MGP_CASTEiJ_T0088919.1 MGP_CASTEiJ_G0032602.1 mouse_genomes_project 8 45064150 45110897 + Acsl1 protein_coding retained_intron MGP_CASTEiJ_T0088920.1 MGP_CASTEiJ_G0032602.1 mouse_genomes_project 8 45064234 45105413 + MGP_CASTEiJ_P0088920 Acsl1 protein_coding protein_coding MGP_CASTEiJ_T0088921.1 MGP_CASTEiJ_G0032602.1 mouse_genomes_project 8 45083219 45130857 + MGP_CASTEiJ_P0088921 Acsl1 protein_coding protein_coding MGP_CASTEiJ_T0088922.1 MGP_CASTEiJ_G0032602.1 mouse_genomes_project 8 45083219 45099623 + MGP_CASTEiJ_P0088922 Acsl1 protein_coding protein_coding MGP_CASTEiJ_T0088923.1 MGP_CASTEiJ_G0032602.1 mouse_genomes_project 8 45085062 45129796 + MGP_CASTEiJ_P0088923 Acsl1 protein_coding protein_coding MGP_CASTEiJ_T0088924.1 MGP_CASTEiJ_G0032602.1 mouse_genomes_project 8 45122097 45123956 + Acsl1 protein_coding retained_intron MGP_CASTEiJ_T0088925.1 MGP_CASTEiJ_G0032602.1 mouse_genomes_project 8 45126347 45129771 + MGP_CASTEiJ_P0088925 Acsl1 protein_coding protein_coding MGP_CASTEiJ_T0008949.1 MGP_CASTEiJ_G0007205.1 mouse_genomes_project 8 122630810 122657647 - A330074K22Rik lincRNA lincRNA MGP_CASTEiJ_T0015365.1 MGP_CASTEiJ_G0013528.1 mouse_genomes_project 8 40297936 40300268 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088698.1 MGP_CASTEiJ_G0032542.1 mouse_genomes_project 8 31693012 31742393 + MGP_CASTEiJ_P0088698 Gtf2e2 protein_coding protein_coding MGP_CASTEiJ_T0088699.1 MGP_CASTEiJ_G0032542.1 mouse_genomes_project 8 31693221 31742393 + MGP_CASTEiJ_P0088699 Gtf2e2 protein_coding protein_coding MGP_CASTEiJ_T0088700.1 MGP_CASTEiJ_G0032542.1 mouse_genomes_project 8 31693312 31715074 + MGP_CASTEiJ_P0088700 Gtf2e2 protein_coding protein_coding MGP_CASTEiJ_T0088701.1 MGP_CASTEiJ_G0032542.1 mouse_genomes_project 8 31693490 31697010 + MGP_CASTEiJ_P0088701 Gtf2e2 protein_coding protein_coding MGP_CASTEiJ_T0088702.1 MGP_CASTEiJ_G0032542.1 mouse_genomes_project 8 31693518 31742402 + MGP_CASTEiJ_P0088702 Gtf2e2 protein_coding protein_coding MGP_CASTEiJ_T0088703.1 MGP_CASTEiJ_G0032542.1 mouse_genomes_project 8 31694622 31722715 + MGP_CASTEiJ_P0088703 Gtf2e2 protein_coding protein_coding MGP_CASTEiJ_T0088705.1 MGP_CASTEiJ_G0032542.1 mouse_genomes_project 8 31729156 31742007 + Gtf2e2 protein_coding processed_transcript MGP_CASTEiJ_T0101337.1 MGP_CASTEiJ_G0038250.1 mouse_genomes_project 8 107256116 107256247 - Gm22972 snoRNA snoRNA MGP_CASTEiJ_T0089679.1 MGP_CASTEiJ_G0032836.1 mouse_genomes_project 8 80561987 80686528 - MGP_CASTEiJ_P0089679 Gab1 protein_coding protein_coding MGP_CASTEiJ_T0091014.1 MGP_CASTEiJ_G0033258.1 mouse_genomes_project 8 125871240 125882922 + MGP_CASTEiJ_P0091014 Spata33 protein_coding protein_coding MGP_CASTEiJ_T0010701.1 MGP_CASTEiJ_G0008889.1 mouse_genomes_project 8 112093533 112093593 + miRNA miRNA MGP_CASTEiJ_T0089279.1 MGP_CASTEiJ_G0032709.1 mouse_genomes_project 8 69623238 69655077 - Slc25a42 protein_coding retained_intron MGP_CASTEiJ_T0089280.1 MGP_CASTEiJ_G0032709.1 mouse_genomes_project 8 69623238 69655028 - MGP_CASTEiJ_P0089280 Slc25a42 protein_coding protein_coding MGP_CASTEiJ_T0089281.1 MGP_CASTEiJ_G0032709.1 mouse_genomes_project 8 69623238 69655077 - MGP_CASTEiJ_P0089281 Slc25a42 protein_coding protein_coding MGP_CASTEiJ_T0089282.1 MGP_CASTEiJ_G0032709.1 mouse_genomes_project 8 69626570 69655077 - Slc25a42 protein_coding retained_intron MGP_CASTEiJ_T0089283.1 MGP_CASTEiJ_G0032709.1 mouse_genomes_project 8 69631237 69655077 - Slc25a42 protein_coding retained_intron MGP_CASTEiJ_T0089340.1 MGP_CASTEiJ_G0032721.1 mouse_genomes_project 8 69950147 69961059 + MGP_CASTEiJ_P0089340 Crlf1 protein_coding protein_coding MGP_CASTEiJ_T0089341.1 MGP_CASTEiJ_G0032721.1 mouse_genomes_project 8 69950350 69957910 + MGP_CASTEiJ_P0089341 Crlf1 protein_coding protein_coding MGP_CASTEiJ_T0089342.1 MGP_CASTEiJ_G0032721.1 mouse_genomes_project 8 69958112 69961008 + MGP_CASTEiJ_P0089342 Crlf1 protein_coding protein_coding MGP_CASTEiJ_T0088479.1 MGP_CASTEiJ_G0032469.1 mouse_genomes_project 8 19930699 20020387 + MGP_CASTEiJ_P0088479 Slc20a2 protein_coding protein_coding MGP_CASTEiJ_T0100090.1 MGP_CASTEiJ_G0037003.1 mouse_genomes_project 8 112011565 112011672 - Gm23627 snRNA snRNA MGP_CASTEiJ_T0088452.1 MGP_CASTEiJ_G0032455.1 mouse_genomes_project 8 19389018 19391113 + MGP_CASTEiJ_P0088452 Defb13 protein_coding protein_coding MGP_CASTEiJ_T0015350.1 MGP_CASTEiJ_G0013513.1 mouse_genomes_project 8 17004441 17004961 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098659.1 MGP_CASTEiJ_G0035590.1 mouse_genomes_project 8 43097212 43097319 + Gm26089 rRNA rRNA MGP_CASTEiJ_T0010719.1 MGP_CASTEiJ_G0008907.1 mouse_genomes_project 8 127786952 127787009 + Gm22197 miRNA miRNA MGP_CASTEiJ_T0090300.1 MGP_CASTEiJ_G0033028.1 mouse_genomes_project 8 105767856 105777970 - MGP_CASTEiJ_P0090300 Cdh16 protein_coding protein_coding MGP_CASTEiJ_T0010681.1 MGP_CASTEiJ_G0008869.1 mouse_genomes_project 8 84972833 84972942 - Gm24197 miRNA miRNA MGP_CASTEiJ_T0090384.1 MGP_CASTEiJ_G0033059.1 mouse_genomes_project 8 106688088 106713228 - MGP_CASTEiJ_P0090384 Zdhhc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090636.1 MGP_CASTEiJ_G0033149.1 mouse_genomes_project 8 112949238 112983591 - MGP_CASTEiJ_P0090636 Rfwd3 protein_coding protein_coding MGP_CASTEiJ_T0010650.1 MGP_CASTEiJ_G0008838.1 mouse_genomes_project 8 33875439 33875566 - Gm44474 miRNA miRNA MGP_CASTEiJ_T0088665.1 MGP_CASTEiJ_G0032525.1 mouse_genomes_project 8 25237475 25283048 + MGP_CASTEiJ_P0088665 protein_coding protein_coding MGP_CASTEiJ_T0088664.1 MGP_CASTEiJ_G0032524.1 mouse_genomes_project 8 25187416 25198125 - MGP_CASTEiJ_P0088664 Chrna6 protein_coding protein_coding MGP_CASTEiJ_T0088795.1 MGP_CASTEiJ_G0032570.1 mouse_genomes_project 8 38855863 38898232 + MGP_CASTEiJ_P0088795 Vps37a protein_coding protein_coding MGP_CASTEiJ_T0008915.1 MGP_CASTEiJ_G0007184.1 mouse_genomes_project 8 92144580 92151732 + Irx3os lincRNA lincRNA MGP_CASTEiJ_T0008916.1 MGP_CASTEiJ_G0007184.1 mouse_genomes_project 8 92146340 92149382 + Irx3os lincRNA lincRNA MGP_CASTEiJ_T0088855.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44042287 44384627 + MGP_CASTEiJ_P0088855 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088856.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44042293 44333318 + Sorbs2 protein_coding retained_intron MGP_CASTEiJ_T0088857.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44042297 44350349 + MGP_CASTEiJ_P0088857 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088858.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44042317 44331950 + MGP_CASTEiJ_P0088858 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088859.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44166294 44296863 + MGP_CASTEiJ_P0088859 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088860.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44166352 44384594 + MGP_CASTEiJ_P0088860 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088861.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44166521 44296885 + MGP_CASTEiJ_P0088861 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088862.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44166734 44190903 + Sorbs2 protein_coding processed_transcript MGP_CASTEiJ_T0088863.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44166750 44297679 + MGP_CASTEiJ_P0088863 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088864.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44200720 44377330 + MGP_CASTEiJ_P0088864 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088865.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44201666 44331950 + MGP_CASTEiJ_P0088865 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088866.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44201672 44384624 + MGP_CASTEiJ_P0088866 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088867.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44201692 44296722 + Sorbs2 protein_coding retained_intron MGP_CASTEiJ_T0088868.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44201705 44297636 + MGP_CASTEiJ_P0088868 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088869.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44201780 44293465 + Sorbs2 protein_coding retained_intron MGP_CASTEiJ_T0088870.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44201800 44327707 + MGP_CASTEiJ_P0088870 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088871.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44204984 44311835 + MGP_CASTEiJ_P0088871 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088872.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44235606 44311884 + MGP_CASTEiJ_P0088872 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088873.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44235610 44311844 + MGP_CASTEiJ_P0088873 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088874.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44284078 44384633 + MGP_CASTEiJ_P0088874 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088875.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44315696 44384625 + MGP_CASTEiJ_P0088875 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088876.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44316424 44355778 + Sorbs2 protein_coding processed_transcript MGP_CASTEiJ_T0088877.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44324901 44347826 + MGP_CASTEiJ_P0088877 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088878.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44325615 44347794 + MGP_CASTEiJ_P0088878 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088879.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44327407 44330939 + Sorbs2 protein_coding retained_intron MGP_CASTEiJ_T0088880.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44330714 44350023 + MGP_CASTEiJ_P0088880 Sorbs2 protein_coding protein_coding MGP_CASTEiJ_T0088881.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44358357 44359070 + Sorbs2 protein_coding retained_intron MGP_CASTEiJ_T0088882.1 MGP_CASTEiJ_G0032591.1 mouse_genomes_project 8 44360965 44362546 + Sorbs2 protein_coding processed_transcript MGP_CASTEiJ_T0089552.1 MGP_CASTEiJ_G0032785.1 mouse_genomes_project 8 71642042 71643057 - MGP_CASTEiJ_P0089552 Olfr372 protein_coding protein_coding MGP_CASTEiJ_T0088166.1 MGP_CASTEiJ_G0032350.1 mouse_genomes_project 8 1121195 1122824 - MGP_CASTEiJ_P0088166 Ctxn1 protein_coding protein_coding MGP_CASTEiJ_T0010644.1 MGP_CASTEiJ_G0008832.1 mouse_genomes_project 8 20586035 20586168 - Gm44365 miRNA miRNA MGP_CASTEiJ_T0090481.1 MGP_CASTEiJ_G0033101.1 mouse_genomes_project 8 108213070 108245791 + MGP_CASTEiJ_P0090481 Cirh1a protein_coding protein_coding MGP_CASTEiJ_T0090482.1 MGP_CASTEiJ_G0033101.1 mouse_genomes_project 8 108213099 108245792 + MGP_CASTEiJ_P0090482 Cirh1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0090416.1 MGP_CASTEiJ_G0033076.1 mouse_genomes_project 8 107137270 107149640 + MGP_CASTEiJ_P0090416 Edc4 protein_coding protein_coding MGP_CASTEiJ_T0090417.1 MGP_CASTEiJ_G0033076.1 mouse_genomes_project 8 107137340 107149623 + MGP_CASTEiJ_P0090417 Edc4 protein_coding protein_coding MGP_CASTEiJ_T0090418.1 MGP_CASTEiJ_G0033076.1 mouse_genomes_project 8 107137466 107151323 + MGP_CASTEiJ_P0090418 Edc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090419.1 MGP_CASTEiJ_G0033076.1 mouse_genomes_project 8 107143358 107144535 + Edc4 protein_coding retained_intron MGP_CASTEiJ_T0090420.1 MGP_CASTEiJ_G0033076.1 mouse_genomes_project 8 107143767 107145949 + MGP_CASTEiJ_P0090420 Edc4 protein_coding protein_coding MGP_CASTEiJ_T0090421.1 MGP_CASTEiJ_G0033076.1 mouse_genomes_project 8 107143781 107145103 + MGP_CASTEiJ_P0090421 Edc4 protein_coding protein_coding MGP_CASTEiJ_T0090422.1 MGP_CASTEiJ_G0033076.1 mouse_genomes_project 8 107146686 107147747 + Edc4 protein_coding retained_intron MGP_CASTEiJ_T0010710.1 MGP_CASTEiJ_G0008898.1 mouse_genomes_project 8 119772815 119772872 - Gm27361 miRNA miRNA MGP_CASTEiJ_T0088311.1 MGP_CASTEiJ_G0032390.1 mouse_genomes_project 8 10362022 10387431 - MGP_CASTEiJ_P0088311 Grtp1 protein_coding protein_coding MGP_CASTEiJ_T0010632.1 MGP_CASTEiJ_G0008820.1 mouse_genomes_project 8 2512884 2512953 + Gm22565 miRNA miRNA MGP_CASTEiJ_T0010656.1 MGP_CASTEiJ_G0008844.1 mouse_genomes_project 8 63746036 63746146 - Mir710 miRNA miRNA MGP_CASTEiJ_T0005251.1 MGP_CASTEiJ_G0004460.1 mouse_genomes_project 8 116555344 116557901 - Gm16117 antisense antisense MGP_CASTEiJ_T0101324.1 MGP_CASTEiJ_G0038237.1 mouse_genomes_project 8 76763451 76763581 - Gm24838 snoRNA snoRNA MGP_CASTEiJ_T0089376.1 MGP_CASTEiJ_G0032731.1 mouse_genomes_project 8 70120007 70133058 - MGP_CASTEiJ_P0089376 Pgpep1 protein_coding protein_coding MGP_CASTEiJ_T0089802.1 MGP_CASTEiJ_G0032879.1 mouse_genomes_project 8 84387941 84524668 + Cacna1a protein_coding retained_intron MGP_CASTEiJ_T0089803.1 MGP_CASTEiJ_G0032879.1 mouse_genomes_project 8 84415459 84646648 + MGP_CASTEiJ_P0089803 Cacna1a protein_coding protein_coding MGP_CASTEiJ_T0089804.1 MGP_CASTEiJ_G0032879.1 mouse_genomes_project 8 84415472 84646464 + MGP_CASTEiJ_P0089804 Cacna1a protein_coding protein_coding MGP_CASTEiJ_T0089805.1 MGP_CASTEiJ_G0032879.1 mouse_genomes_project 8 84464036 84646651 + MGP_CASTEiJ_P0089805 Cacna1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0089806.1 MGP_CASTEiJ_G0032879.1 mouse_genomes_project 8 84552648 84559636 + Cacna1a protein_coding processed_transcript MGP_CASTEiJ_T0089807.1 MGP_CASTEiJ_G0032879.1 mouse_genomes_project 8 84577367 84585959 + Cacna1a protein_coding retained_intron MGP_CASTEiJ_T0089808.1 MGP_CASTEiJ_G0032879.1 mouse_genomes_project 8 84606896 84617440 + Cacna1a protein_coding retained_intron MGP_CASTEiJ_T0089809.1 MGP_CASTEiJ_G0032879.1 mouse_genomes_project 8 84606909 84618402 + Cacna1a protein_coding retained_intron MGP_CASTEiJ_T0089810.1 MGP_CASTEiJ_G0032879.1 mouse_genomes_project 8 84606935 84639847 + Cacna1a protein_coding retained_intron MGP_CASTEiJ_T0089811.1 MGP_CASTEiJ_G0032879.1 mouse_genomes_project 8 84607438 84623236 + Cacna1a protein_coding processed_transcript MGP_CASTEiJ_T0090909.1 MGP_CASTEiJ_G0033230.1 mouse_genomes_project 8 124503878 124537111 - MGP_CASTEiJ_P0090909 Car5a protein_coding protein_coding MGP_CASTEiJ_T0090910.1 MGP_CASTEiJ_G0033230.1 mouse_genomes_project 8 124508799 124518862 - Car5a protein_coding processed_transcript MGP_CASTEiJ_T0090496.1 MGP_CASTEiJ_G0033108.1 mouse_genomes_project 8 108400447 108404478 - MGP_CASTEiJ_P0090496 Tmed6 protein_coding protein_coding MGP_CASTEiJ_T0015339.1 MGP_CASTEiJ_G0013502.1 mouse_genomes_project 8 1633052 1633277 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101347.1 MGP_CASTEiJ_G0038260.1 mouse_genomes_project 8 129817568 129817702 - Gm26397 snoRNA snoRNA MGP_CASTEiJ_T0090412.1 MGP_CASTEiJ_G0033073.1 mouse_genomes_project 8 107096186 107104730 - MGP_CASTEiJ_P0090412 Cenpt protein_coding protein_coding MGP_CASTEiJ_T0090531.1 MGP_CASTEiJ_G0033117.1 mouse_genomes_project 8 111008699 111058522 + MGP_CASTEiJ_P0090531 Pmfbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090532.1 MGP_CASTEiJ_G0033117.1 mouse_genomes_project 8 111008916 111058523 + MGP_CASTEiJ_P0090532 Pmfbp1 protein_coding protein_coding MGP_CASTEiJ_T0089788.1 MGP_CASTEiJ_G0032875.1 mouse_genomes_project 8 84206964 84232808 - MGP_CASTEiJ_P0089788 Zswim4 protein_coding protein_coding MGP_CASTEiJ_T0088244.1 MGP_CASTEiJ_G0032378.1 mouse_genomes_project 8 9537772 9542620 + MGP_CASTEiJ_P0088244 protein_coding protein_coding MGP_CASTEiJ_T0015408.1 MGP_CASTEiJ_G0013571.1 mouse_genomes_project 8 123213933 123214614 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0089606.1 MGP_CASTEiJ_G0032808.1 mouse_genomes_project 8 74561738 74599216 + MGP_CASTEiJ_P0089606 Tom1 protein_coding protein_coding MGP_CASTEiJ_T0089607.1 MGP_CASTEiJ_G0032808.1 mouse_genomes_project 8 74561738 74599216 + MGP_CASTEiJ_P0089607 Tom1 protein_coding protein_coding MGP_CASTEiJ_T0088392.1 MGP_CASTEiJ_G0032417.1 mouse_genomes_project 8 12395540 12465377 + MGP_CASTEiJ_P0088392 Myom2 protein_coding protein_coding MGP_CASTEiJ_T0088393.1 MGP_CASTEiJ_G0032417.1 mouse_genomes_project 8 12396703 12401636 + Myom2 protein_coding processed_transcript MGP_CASTEiJ_T0088394.1 MGP_CASTEiJ_G0032417.1 mouse_genomes_project 8 12397919 12411748 + Myom2 protein_coding retained_intron MGP_CASTEiJ_T0088395.1 MGP_CASTEiJ_G0032417.1 mouse_genomes_project 8 12438395 12441259 + Myom2 protein_coding retained_intron MGP_CASTEiJ_T0088396.1 MGP_CASTEiJ_G0032417.1 mouse_genomes_project 8 12451121 12463021 + Myom2 protein_coding processed_transcript MGP_CASTEiJ_T0090469.1 MGP_CASTEiJ_G0033095.1 mouse_genomes_project 8 107780896 107787295 + MGP_CASTEiJ_P0090469 6030452D12Rik protein_coding protein_coding MGP_CASTEiJ_T0098402.1 MGP_CASTEiJ_G0035333.1 mouse_genomes_project 8 6807600 6807931 - pseudogene pseudogene MGP_CASTEiJ_T0090272.1 MGP_CASTEiJ_G0033017.1 mouse_genomes_project 8 105286587 105342776 + MGP_CASTEiJ_P0090272 Bean1 protein_coding protein_coding MGP_CASTEiJ_T0090273.1 MGP_CASTEiJ_G0033017.1 mouse_genomes_project 8 105286636 105342787 + MGP_CASTEiJ_P0090273 Bean1 protein_coding protein_coding MGP_CASTEiJ_T0089484.1 MGP_CASTEiJ_G0032770.1 mouse_genomes_project 8 71146789 71150870 + MGP_CASTEiJ_P0089484 Pgls protein_coding protein_coding MGP_CASTEiJ_T0089485.1 MGP_CASTEiJ_G0032770.1 mouse_genomes_project 8 71146797 71155687 + MGP_CASTEiJ_P0089485 Pgls protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089486.1 MGP_CASTEiJ_G0032770.1 mouse_genomes_project 8 71146824 71150261 + Pgls protein_coding retained_intron MGP_CASTEiJ_T0089487.1 MGP_CASTEiJ_G0032770.1 mouse_genomes_project 8 71146850 71149707 + MGP_CASTEiJ_P0089487 Pgls protein_coding protein_coding MGP_CASTEiJ_T0089488.1 MGP_CASTEiJ_G0032770.1 mouse_genomes_project 8 71146904 71150870 + MGP_CASTEiJ_P0089488 Pgls protein_coding protein_coding MGP_CASTEiJ_T0089649.1 MGP_CASTEiJ_G0032825.1 mouse_genomes_project 8 78760597 78926074 + MGP_CASTEiJ_P0089649 Zfp827 protein_coding protein_coding MGP_CASTEiJ_T0089650.1 MGP_CASTEiJ_G0032825.1 mouse_genomes_project 8 78760597 78803002 + MGP_CASTEiJ_P0089650 Zfp827 protein_coding protein_coding MGP_CASTEiJ_T0089651.1 MGP_CASTEiJ_G0032825.1 mouse_genomes_project 8 78760745 78923171 + MGP_CASTEiJ_P0089651 Zfp827 protein_coding protein_coding MGP_CASTEiJ_T0089652.1 MGP_CASTEiJ_G0032825.1 mouse_genomes_project 8 78849999 78926096 + MGP_CASTEiJ_P0089652 Zfp827 protein_coding protein_coding MGP_CASTEiJ_T0089653.1 MGP_CASTEiJ_G0032825.1 mouse_genomes_project 8 78852154 78925529 + MGP_CASTEiJ_P0089653 Zfp827 protein_coding protein_coding MGP_CASTEiJ_T0089654.1 MGP_CASTEiJ_G0032825.1 mouse_genomes_project 8 78908192 78923169 + MGP_CASTEiJ_P0089654 Zfp827 protein_coding protein_coding MGP_CASTEiJ_T0089655.1 MGP_CASTEiJ_G0032825.1 mouse_genomes_project 8 78911354 78922075 + MGP_CASTEiJ_P0089655 Zfp827 protein_coding protein_coding MGP_CASTEiJ_T0005233.1 MGP_CASTEiJ_G0004444.1 mouse_genomes_project 8 84616561 84622523 - Gm16183 antisense antisense MGP_CASTEiJ_T0100082.1 MGP_CASTEiJ_G0036995.1 mouse_genomes_project 8 89801633 89801740 - Gm26331 snRNA snRNA MGP_CASTEiJ_T0100084.1 MGP_CASTEiJ_G0036997.1 mouse_genomes_project 8 97825657 97825759 + Gm25160 snRNA snRNA MGP_CASTEiJ_T0089159.1 MGP_CASTEiJ_G0032673.1 mouse_genomes_project 8 67597421 67667548 + MGP_CASTEiJ_P0089159 Sh2d4a protein_coding protein_coding MGP_CASTEiJ_T0089096.1 MGP_CASTEiJ_G0032651.1 mouse_genomes_project 8 61162095 61232403 - MGP_CASTEiJ_P0089096 Anxa10 protein_coding protein_coding MGP_CASTEiJ_T0089097.1 MGP_CASTEiJ_G0032651.1 mouse_genomes_project 8 61162574 61232409 - MGP_CASTEiJ_P0089097 Anxa10 protein_coding protein_coding MGP_CASTEiJ_T0015387.1 MGP_CASTEiJ_G0013550.1 mouse_genomes_project 8 79474060 79475015 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088526.1 MGP_CASTEiJ_G0032483.1 mouse_genomes_project 8 21150143 21415350 + MGP_CASTEiJ_P0088526 Zmat4 protein_coding protein_coding MGP_CASTEiJ_T0088527.1 MGP_CASTEiJ_G0032483.1 mouse_genomes_project 8 21185816 21581764 + MGP_CASTEiJ_P0088527 Zmat4 protein_coding protein_coding MGP_CASTEiJ_T0088528.1 MGP_CASTEiJ_G0032483.1 mouse_genomes_project 8 21185816 21675090 + MGP_CASTEiJ_P0088528 Zmat4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088529.1 MGP_CASTEiJ_G0032483.1 mouse_genomes_project 8 21216952 21320651 + MGP_CASTEiJ_P0088529 Zmat4 protein_coding protein_coding MGP_CASTEiJ_T0088530.1 MGP_CASTEiJ_G0032483.1 mouse_genomes_project 8 21444165 21535395 + Zmat4 protein_coding retained_intron MGP_CASTEiJ_T0088134.1 MGP_CASTEiJ_G0032344.1 mouse_genomes_project 8 1025301 1049718 + protein_coding retained_intron MGP_CASTEiJ_T0088135.1 MGP_CASTEiJ_G0032344.1 mouse_genomes_project 8 1025301 1056528 + MGP_CASTEiJ_P0088135 protein_coding protein_coding MGP_CASTEiJ_T0088136.1 MGP_CASTEiJ_G0032344.1 mouse_genomes_project 8 1025301 1070847 + MGP_CASTEiJ_P0088136 protein_coding protein_coding MGP_CASTEiJ_T0088137.1 MGP_CASTEiJ_G0032344.1 mouse_genomes_project 8 1025308 1071020 + MGP_CASTEiJ_P0088137 protein_coding protein_coding MGP_CASTEiJ_T0088138.1 MGP_CASTEiJ_G0032344.1 mouse_genomes_project 8 1025321 1070842 + MGP_CASTEiJ_P0088138 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088139.1 MGP_CASTEiJ_G0032344.1 mouse_genomes_project 8 1025335 1064542 + protein_coding retained_intron MGP_CASTEiJ_T0088140.1 MGP_CASTEiJ_G0032344.1 mouse_genomes_project 8 1025473 1070842 + MGP_CASTEiJ_P0088140 protein_coding protein_coding MGP_CASTEiJ_T0088141.1 MGP_CASTEiJ_G0032344.1 mouse_genomes_project 8 1050025 1050867 + protein_coding retained_intron MGP_CASTEiJ_T0088142.1 MGP_CASTEiJ_G0032344.1 mouse_genomes_project 8 1054118 1065893 + protein_coding processed_transcript MGP_CASTEiJ_T0088143.1 MGP_CASTEiJ_G0032344.1 mouse_genomes_project 8 1063619 1068525 + protein_coding retained_intron MGP_CASTEiJ_T0088144.1 MGP_CASTEiJ_G0032344.1 mouse_genomes_project 8 1066188 1070838 + protein_coding retained_intron MGP_CASTEiJ_T0088145.1 MGP_CASTEiJ_G0032344.1 mouse_genomes_project 8 1066432 1069140 + protein_coding retained_intron MGP_CASTEiJ_T0088146.1 MGP_CASTEiJ_G0032344.1 mouse_genomes_project 8 1068528 1069399 + protein_coding retained_intron MGP_CASTEiJ_T0088147.1 MGP_CASTEiJ_G0032344.1 mouse_genomes_project 8 1069048 1074020 + MGP_CASTEiJ_P0088147 protein_coding protein_coding MGP_CASTEiJ_T0101333.1 MGP_CASTEiJ_G0038246.1 mouse_genomes_project 8 96310226 96310359 - Gm26265 snoRNA snoRNA MGP_CASTEiJ_T0088354.1 MGP_CASTEiJ_G0032406.1 mouse_genomes_project 8 11159625 11160423 + MGP_CASTEiJ_P0088354 protein_coding protein_coding MGP_CASTEiJ_T0008917.1 MGP_CASTEiJ_G0007185.1 mouse_genomes_project 8 92213272 92221989 + Gm28511 lincRNA lincRNA MGP_CASTEiJ_T0089944.1 MGP_CASTEiJ_G0032909.1 mouse_genomes_project 8 85130366 85135907 - Wdr83 protein_coding retained_intron MGP_CASTEiJ_T0089945.1 MGP_CASTEiJ_G0032909.1 mouse_genomes_project 8 85130366 85135978 - Wdr83 protein_coding retained_intron MGP_CASTEiJ_T0089946.1 MGP_CASTEiJ_G0032909.1 mouse_genomes_project 8 85130366 85136021 - MGP_CASTEiJ_P0089946 Wdr83 protein_coding protein_coding MGP_CASTEiJ_T0089947.1 MGP_CASTEiJ_G0032909.1 mouse_genomes_project 8 85130367 85135190 - Wdr83 protein_coding retained_intron MGP_CASTEiJ_T0089948.1 MGP_CASTEiJ_G0032909.1 mouse_genomes_project 8 85130368 85131623 - MGP_CASTEiJ_P0089948 Wdr83 protein_coding protein_coding MGP_CASTEiJ_T0089949.1 MGP_CASTEiJ_G0032909.1 mouse_genomes_project 8 85130369 85131623 - Wdr83 protein_coding retained_intron MGP_CASTEiJ_T0089950.1 MGP_CASTEiJ_G0032909.1 mouse_genomes_project 8 85130383 85136581 - Wdr83 protein_coding retained_intron MGP_CASTEiJ_T0089951.1 MGP_CASTEiJ_G0032909.1 mouse_genomes_project 8 85131159 85135948 - MGP_CASTEiJ_P0089951 Wdr83 protein_coding protein_coding MGP_CASTEiJ_T0089952.1 MGP_CASTEiJ_G0032909.1 mouse_genomes_project 8 85131455 85135949 - MGP_CASTEiJ_P0089952 Wdr83 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089953.1 MGP_CASTEiJ_G0032909.1 mouse_genomes_project 8 85134969 85135944 - Wdr83 protein_coding retained_intron MGP_CASTEiJ_T0088732.1 MGP_CASTEiJ_G0032549.1 mouse_genomes_project 8 32335801 32336277 + MGP_CASTEiJ_P0088732 protein_coding protein_coding MGP_CASTEiJ_T0088362.1 MGP_CASTEiJ_G0032409.1 mouse_genomes_project 8 11298124 11362592 - MGP_CASTEiJ_P0088362 Erich1 protein_coding protein_coding MGP_CASTEiJ_T0010673.1 MGP_CASTEiJ_G0008861.1 mouse_genomes_project 8 84070519 84070607 + Mir709 miRNA miRNA MGP_CASTEiJ_T0088654.1 MGP_CASTEiJ_G0032518.1 mouse_genomes_project 8 24855727 24860524 - MGP_CASTEiJ_P0088654 Brf2 protein_coding protein_coding MGP_CASTEiJ_T0100059.1 MGP_CASTEiJ_G0036972.1 mouse_genomes_project 8 34548243 34548394 - Gm26150 snRNA snRNA MGP_CASTEiJ_T0089079.1 MGP_CASTEiJ_G0032649.1 mouse_genomes_project 8 60594677 60635237 - MGP_CASTEiJ_P0089079 Palld protein_coding unknown_likely_coding MGP_CASTEiJ_T0089080.1 MGP_CASTEiJ_G0032649.1 mouse_genomes_project 8 60594847 60996344 - MGP_CASTEiJ_P0089080 Palld protein_coding protein_coding MGP_CASTEiJ_T0089081.1 MGP_CASTEiJ_G0032649.1 mouse_genomes_project 8 60594849 60678114 - MGP_CASTEiJ_P0089081 Palld protein_coding protein_coding MGP_CASTEiJ_T0089082.1 MGP_CASTEiJ_G0032649.1 mouse_genomes_project 8 60594853 60862063 - MGP_CASTEiJ_P0089082 Palld protein_coding protein_coding MGP_CASTEiJ_T0089083.1 MGP_CASTEiJ_G0032649.1 mouse_genomes_project 8 60596569 60597544 - Palld protein_coding retained_intron MGP_CASTEiJ_T0089084.1 MGP_CASTEiJ_G0032649.1 mouse_genomes_project 8 60596665 60996365 - MGP_CASTEiJ_P0089084 Palld protein_coding protein_coding MGP_CASTEiJ_T0089085.1 MGP_CASTEiJ_G0032649.1 mouse_genomes_project 8 60597556 60678111 - MGP_CASTEiJ_P0089085 Palld protein_coding protein_coding MGP_CASTEiJ_T0089086.1 MGP_CASTEiJ_G0032649.1 mouse_genomes_project 8 60606821 60619119 - Palld protein_coding retained_intron MGP_CASTEiJ_T0089087.1 MGP_CASTEiJ_G0032649.1 mouse_genomes_project 8 60784485 60862072 - Palld protein_coding retained_intron MGP_CASTEiJ_T0089088.1 MGP_CASTEiJ_G0032649.1 mouse_genomes_project 8 60808273 60862063 - Palld protein_coding retained_intron MGP_CASTEiJ_T0088152.1 MGP_CASTEiJ_G0032346.1 mouse_genomes_project 8 1090561 1101025 + MGP_CASTEiJ_P0088152 Lrrc8e protein_coding protein_coding MGP_CASTEiJ_T0089957.1 MGP_CASTEiJ_G0032911.1 mouse_genomes_project 8 85139153 85156417 + MGP_CASTEiJ_P0089957 Man2b1 protein_coding protein_coding MGP_CASTEiJ_T0090629.1 MGP_CASTEiJ_G0033147.1 mouse_genomes_project 8 112743566 112766175 + MGP_CASTEiJ_P0090629 Pdpr protein_coding protein_coding MGP_CASTEiJ_T0090630.1 MGP_CASTEiJ_G0033147.1 mouse_genomes_project 8 112743566 112788677 + MGP_CASTEiJ_P0090630 Pdpr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090631.1 MGP_CASTEiJ_G0033147.1 mouse_genomes_project 8 112743566 112790604 + MGP_CASTEiJ_P0090631 Pdpr protein_coding protein_coding MGP_CASTEiJ_T0100065.1 MGP_CASTEiJ_G0036978.1 mouse_genomes_project 8 51372889 51373028 - Gm24929 snRNA snRNA MGP_CASTEiJ_T0090355.1 MGP_CASTEiJ_G0033050.1 mouse_genomes_project 8 106513490 106518486 + MGP_CASTEiJ_P0090355 Elmo3 protein_coding protein_coding MGP_CASTEiJ_T0089926.1 MGP_CASTEiJ_G0032906.1 mouse_genomes_project 8 85115755 85122375 + MGP_CASTEiJ_P0089926 Fbxw9 protein_coding protein_coding MGP_CASTEiJ_T0089927.1 MGP_CASTEiJ_G0032906.1 mouse_genomes_project 8 85115756 85122377 + Fbxw9 protein_coding retained_intron MGP_CASTEiJ_T0089928.1 MGP_CASTEiJ_G0032906.1 mouse_genomes_project 8 85115797 85120071 + Fbxw9 protein_coding retained_intron MGP_CASTEiJ_T0089929.1 MGP_CASTEiJ_G0032906.1 mouse_genomes_project 8 85116229 85122370 + Fbxw9 protein_coding retained_intron MGP_CASTEiJ_T0089930.1 MGP_CASTEiJ_G0032906.1 mouse_genomes_project 8 85116267 85122139 + Fbxw9 protein_coding processed_transcript MGP_CASTEiJ_T0089931.1 MGP_CASTEiJ_G0032906.1 mouse_genomes_project 8 85119853 85121583 + Fbxw9 protein_coding retained_intron MGP_CASTEiJ_T0089932.1 MGP_CASTEiJ_G0032906.1 mouse_genomes_project 8 85120826 85121620 + Fbxw9 protein_coding processed_transcript MGP_CASTEiJ_T0089933.1 MGP_CASTEiJ_G0032906.1 mouse_genomes_project 8 85120880 85121622 + Fbxw9 protein_coding retained_intron MGP_CASTEiJ_T0089934.1 MGP_CASTEiJ_G0032906.1 mouse_genomes_project 8 85121320 85122156 + Fbxw9 protein_coding retained_intron MGP_CASTEiJ_T0088344.1 MGP_CASTEiJ_G0032401.1 mouse_genomes_project 8 10940512 10969893 + MGP_CASTEiJ_P0088344 protein_coding protein_coding MGP_CASTEiJ_T0089407.1 MGP_CASTEiJ_G0032747.1 mouse_genomes_project 8 70372355 70383943 - MGP_CASTEiJ_P0089407 Slc5a5 protein_coding protein_coding MGP_CASTEiJ_T0090085.1 MGP_CASTEiJ_G0032954.1 mouse_genomes_project 8 93275680 93343314 + MGP_CASTEiJ_P0090085 Lpcat2 protein_coding protein_coding MGP_CASTEiJ_T0090086.1 MGP_CASTEiJ_G0032954.1 mouse_genomes_project 8 93275810 93289628 + Lpcat2 protein_coding processed_transcript MGP_CASTEiJ_T0090088.1 MGP_CASTEiJ_G0032954.1 mouse_genomes_project 8 93329980 93342075 + Lpcat2 protein_coding processed_transcript MGP_CASTEiJ_T0010653.1 MGP_CASTEiJ_G0008841.1 mouse_genomes_project 8 46250477 46250557 + Gm27409 miRNA miRNA MGP_CASTEiJ_T0011390.1 MGP_CASTEiJ_G0009578.1 mouse_genomes_project 8 83717070 83717356 + Gm22024 misc_RNA misc_RNA MGP_CASTEiJ_T0088767.1 MGP_CASTEiJ_G0032564.1 mouse_genomes_project 8 37322134 37463292 + MGP_CASTEiJ_P0088767 Tusc3 protein_coding protein_coding MGP_CASTEiJ_T0088768.1 MGP_CASTEiJ_G0032564.1 mouse_genomes_project 8 37322175 37463292 + MGP_CASTEiJ_P0088768 Tusc3 protein_coding protein_coding MGP_CASTEiJ_T0088124.1 MGP_CASTEiJ_G0032339.1 mouse_genomes_project 8 735295 741643 - MGP_CASTEiJ_P0088124 Cd209e protein_coding protein_coding MGP_CASTEiJ_T0090314.1 MGP_CASTEiJ_G0033034.1 mouse_genomes_project 8 106083238 106091593 + MGP_CASTEiJ_P0090314 Ces2e protein_coding protein_coding MGP_CASTEiJ_T0090315.1 MGP_CASTEiJ_G0033034.1 mouse_genomes_project 8 106083238 106091593 + MGP_CASTEiJ_P0090315 Ces2e protein_coding protein_coding MGP_CASTEiJ_T0089514.1 MGP_CASTEiJ_G0032776.1 mouse_genomes_project 8 71247826 71260058 - MGP_CASTEiJ_P0089514 B3gnt3 protein_coding protein_coding MGP_CASTEiJ_T0089213.1 MGP_CASTEiJ_G0032691.1 mouse_genomes_project 8 69211201 69227035 + MGP_CASTEiJ_P0089213 Gmip protein_coding protein_coding MGP_CASTEiJ_T0089214.1 MGP_CASTEiJ_G0032691.1 mouse_genomes_project 8 69211212 69224174 + MGP_CASTEiJ_P0089214 Gmip protein_coding protein_coding MGP_CASTEiJ_T0089215.1 MGP_CASTEiJ_G0032691.1 mouse_genomes_project 8 69213006 69217694 + Gmip protein_coding processed_transcript MGP_CASTEiJ_T0089216.1 MGP_CASTEiJ_G0032691.1 mouse_genomes_project 8 69213162 69214139 + Gmip protein_coding processed_transcript MGP_CASTEiJ_T0089217.1 MGP_CASTEiJ_G0032691.1 mouse_genomes_project 8 69217100 69217942 + Gmip protein_coding retained_intron MGP_CASTEiJ_T0089218.1 MGP_CASTEiJ_G0032691.1 mouse_genomes_project 8 69217725 69219999 + Gmip protein_coding processed_transcript MGP_CASTEiJ_T0089219.1 MGP_CASTEiJ_G0032691.1 mouse_genomes_project 8 69221909 69222796 + Gmip protein_coding retained_intron MGP_CASTEiJ_T0089220.1 MGP_CASTEiJ_G0032691.1 mouse_genomes_project 8 69223030 69224179 + MGP_CASTEiJ_P0089220 Gmip protein_coding protein_coding MGP_CASTEiJ_T0089221.1 MGP_CASTEiJ_G0032691.1 mouse_genomes_project 8 69223266 69226499 + Gmip protein_coding processed_transcript MGP_CASTEiJ_T0090404.1 MGP_CASTEiJ_G0033068.1 mouse_genomes_project 8 106931483 106935787 - MGP_CASTEiJ_P0090404 Enkd1 protein_coding protein_coding MGP_CASTEiJ_T0088683.1 MGP_CASTEiJ_G0032534.1 mouse_genomes_project 8 29811865 29878794 - MGP_CASTEiJ_P0088683 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0088233.1 MGP_CASTEiJ_G0032375.1 mouse_genomes_project 8 8830559 8925830 + MGP_CASTEiJ_P0088233 Arhgef7 protein_coding protein_coding MGP_CASTEiJ_T0088234.1 MGP_CASTEiJ_G0032375.1 mouse_genomes_project 8 8830675 8934457 + MGP_CASTEiJ_P0088234 Arhgef7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088235.1 MGP_CASTEiJ_G0032375.1 mouse_genomes_project 8 8830706 8929927 + MGP_CASTEiJ_P0088235 Arhgef7 protein_coding protein_coding MGP_CASTEiJ_T0088236.1 MGP_CASTEiJ_G0032375.1 mouse_genomes_project 8 8884406 8937993 + MGP_CASTEiJ_P0088236 Arhgef7 protein_coding protein_coding MGP_CASTEiJ_T0088237.1 MGP_CASTEiJ_G0032375.1 mouse_genomes_project 8 8915146 8919114 + Arhgef7 protein_coding processed_transcript MGP_CASTEiJ_T0088238.1 MGP_CASTEiJ_G0032375.1 mouse_genomes_project 8 8933007 8935060 + Arhgef7 protein_coding processed_transcript MGP_CASTEiJ_T0088118.1 MGP_CASTEiJ_G0032335.1 mouse_genomes_project 8 633432 638388 + MGP_CASTEiJ_P0088118 Trappc5 protein_coding protein_coding MGP_CASTEiJ_T0008893.1 MGP_CASTEiJ_G0007170.1 mouse_genomes_project 8 86966720 86983068 + Gm27167 lincRNA lincRNA MGP_CASTEiJ_T0088626.1 MGP_CASTEiJ_G0032509.1 mouse_genomes_project 8 23609820 23625587 - MGP_CASTEiJ_P0088626 Pomk protein_coding protein_coding MGP_CASTEiJ_T0088645.1 MGP_CASTEiJ_G0032514.1 mouse_genomes_project 8 24700543 24704675 + MGP_CASTEiJ_P0088645 Zfp703 protein_coding protein_coding MGP_CASTEiJ_T0088646.1 MGP_CASTEiJ_G0032514.1 mouse_genomes_project 8 24700543 24704675 + MGP_CASTEiJ_P0088646 Zfp703 protein_coding protein_coding MGP_CASTEiJ_T0011394.1 MGP_CASTEiJ_G0009582.1 mouse_genomes_project 8 106404554 106404643 + Gm24629 misc_RNA misc_RNA MGP_CASTEiJ_T0091042.1 MGP_CASTEiJ_G0033263.1 mouse_genomes_project 8 125945300 126007924 - MGP_CASTEiJ_P0091042 Fanca protein_coding protein_coding MGP_CASTEiJ_T0091043.1 MGP_CASTEiJ_G0033263.1 mouse_genomes_project 8 125946280 125951225 - Fanca protein_coding processed_transcript MGP_CASTEiJ_T0091044.1 MGP_CASTEiJ_G0033263.1 mouse_genomes_project 8 125948191 125954887 - MGP_CASTEiJ_P0091044 Fanca protein_coding protein_coding MGP_CASTEiJ_T0091045.1 MGP_CASTEiJ_G0033263.1 mouse_genomes_project 8 125951159 125953867 - MGP_CASTEiJ_P0091045 Fanca protein_coding protein_coding MGP_CASTEiJ_T0091046.1 MGP_CASTEiJ_G0033263.1 mouse_genomes_project 8 125954734 125960844 - Fanca protein_coding retained_intron MGP_CASTEiJ_T0091047.1 MGP_CASTEiJ_G0033263.1 mouse_genomes_project 8 125964347 126007908 - Fanca protein_coding retained_intron MGP_CASTEiJ_T0091048.1 MGP_CASTEiJ_G0033263.1 mouse_genomes_project 8 125964566 125999743 - MGP_CASTEiJ_P0091048 Fanca protein_coding protein_coding MGP_CASTEiJ_T0091049.1 MGP_CASTEiJ_G0033263.1 mouse_genomes_project 8 125967661 125970135 - Fanca protein_coding retained_intron MGP_CASTEiJ_T0091050.1 MGP_CASTEiJ_G0033263.1 mouse_genomes_project 8 125971522 126022853 - MGP_CASTEiJ_P0091050 Fanca protein_coding unknown_likely_coding MGP_CASTEiJ_T0091051.1 MGP_CASTEiJ_G0033263.1 mouse_genomes_project 8 125984061 126007908 - MGP_CASTEiJ_P0091051 Fanca protein_coding protein_coding MGP_CASTEiJ_T0091052.1 MGP_CASTEiJ_G0033263.1 mouse_genomes_project 8 125998661 126007908 - Fanca protein_coding retained_intron MGP_CASTEiJ_T0005265.1 MGP_CASTEiJ_G0004473.1 mouse_genomes_project 8 127959413 127962339 - Gm16237 antisense antisense MGP_CASTEiJ_T0005191.1 MGP_CASTEiJ_G0004412.1 mouse_genomes_project 8 10065260 10069046 - Gm15353 antisense antisense MGP_CASTEiJ_T0005192.1 MGP_CASTEiJ_G0004412.1 mouse_genomes_project 8 10065404 10069036 - Gm15353 antisense antisense MGP_CASTEiJ_T0015407.1 MGP_CASTEiJ_G0013570.1 mouse_genomes_project 8 119279338 119281623 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091157.1 MGP_CASTEiJ_G0033300.1 mouse_genomes_project 8 128514359 128676682 - MGP_CASTEiJ_P0091157 Pcnx2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091158.1 MGP_CASTEiJ_G0033300.1 mouse_genomes_project 8 128516309 128676792 - MGP_CASTEiJ_P0091158 Pcnx2 protein_coding protein_coding MGP_CASTEiJ_T0091159.1 MGP_CASTEiJ_G0033300.1 mouse_genomes_project 8 128516310 128611783 - Pcnx2 protein_coding retained_intron MGP_CASTEiJ_T0091160.1 MGP_CASTEiJ_G0033300.1 mouse_genomes_project 8 128516312 128540766 - Pcnx2 protein_coding retained_intron MGP_CASTEiJ_T0091161.1 MGP_CASTEiJ_G0033300.1 mouse_genomes_project 8 128597426 128599264 - Pcnx2 protein_coding retained_intron MGP_CASTEiJ_T0091162.1 MGP_CASTEiJ_G0033300.1 mouse_genomes_project 8 128609529 128676792 - MGP_CASTEiJ_P0091162 Pcnx2 protein_coding protein_coding MGP_CASTEiJ_T0091163.1 MGP_CASTEiJ_G0033300.1 mouse_genomes_project 8 128636079 128676750 - Pcnx2 protein_coding processed_transcript MGP_CASTEiJ_T0089343.1 MGP_CASTEiJ_G0032722.1 mouse_genomes_project 8 69961269 69963699 - 2810428I15Rik protein_coding retained_intron MGP_CASTEiJ_T0089344.1 MGP_CASTEiJ_G0032722.1 mouse_genomes_project 8 69961272 69963090 - 2810428I15Rik protein_coding retained_intron MGP_CASTEiJ_T0089345.1 MGP_CASTEiJ_G0032722.1 mouse_genomes_project 8 69961272 69963404 - 2810428I15Rik protein_coding processed_transcript MGP_CASTEiJ_T0089346.1 MGP_CASTEiJ_G0032722.1 mouse_genomes_project 8 69961272 69963730 - MGP_CASTEiJ_P0089346 2810428I15Rik protein_coding protein_coding MGP_CASTEiJ_T0089347.1 MGP_CASTEiJ_G0032722.1 mouse_genomes_project 8 69961276 69963715 - MGP_CASTEiJ_P0089347 2810428I15Rik protein_coding protein_coding MGP_CASTEiJ_T0089348.1 MGP_CASTEiJ_G0032722.1 mouse_genomes_project 8 69961375 69963086 - 2810428I15Rik protein_coding retained_intron MGP_CASTEiJ_T0089349.1 MGP_CASTEiJ_G0032722.1 mouse_genomes_project 8 69962222 69963677 - 2810428I15Rik protein_coding retained_intron MGP_CASTEiJ_T0089350.1 MGP_CASTEiJ_G0032722.1 mouse_genomes_project 8 69962828 69963691 - 2810428I15Rik protein_coding retained_intron MGP_CASTEiJ_T0090985.1 MGP_CASTEiJ_G0033251.1 mouse_genomes_project 8 125537220 125631977 - MGP_CASTEiJ_P0090985 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090986.1 MGP_CASTEiJ_G0033251.1 mouse_genomes_project 8 125537549 125549889 - MGP_CASTEiJ_P0090986 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090987.1 MGP_CASTEiJ_G0033251.1 mouse_genomes_project 8 125550278 125569755 - MGP_CASTEiJ_P0090987 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090988.1 MGP_CASTEiJ_G0033251.1 mouse_genomes_project 8 125559263 125631957 - protein_coding retained_intron MGP_CASTEiJ_T0101339.1 MGP_CASTEiJ_G0038252.1 mouse_genomes_project 8 112454181 112454270 - Snord111 snoRNA snoRNA MGP_CASTEiJ_T0088364.1 MGP_CASTEiJ_G0032411.1 mouse_genomes_project 8 11372431 12172752 + MGP_CASTEiJ_P0088364 Dlgap2 protein_coding protein_coding MGP_CASTEiJ_T0088365.1 MGP_CASTEiJ_G0032411.1 mouse_genomes_project 8 11372441 12173328 + MGP_CASTEiJ_P0088365 Dlgap2 protein_coding protein_coding MGP_CASTEiJ_T0088366.1 MGP_CASTEiJ_G0032411.1 mouse_genomes_project 8 11464878 12172352 + MGP_CASTEiJ_P0088366 Dlgap2 protein_coding protein_coding MGP_CASTEiJ_T0088367.1 MGP_CASTEiJ_G0032411.1 mouse_genomes_project 8 11464878 12172752 + MGP_CASTEiJ_P0088367 Dlgap2 protein_coding protein_coding MGP_CASTEiJ_T0088368.1 MGP_CASTEiJ_G0032411.1 mouse_genomes_project 8 11682120 11819922 + Dlgap2 protein_coding processed_transcript MGP_CASTEiJ_T0088369.1 MGP_CASTEiJ_G0032411.1 mouse_genomes_project 8 11682334 11846104 + Dlgap2 protein_coding processed_transcript MGP_CASTEiJ_T0088370.1 MGP_CASTEiJ_G0032411.1 mouse_genomes_project 8 11682382 12156081 + Dlgap2 protein_coding retained_intron MGP_CASTEiJ_T0088371.1 MGP_CASTEiJ_G0032411.1 mouse_genomes_project 8 12072745 12090983 + Dlgap2 protein_coding processed_transcript MGP_CASTEiJ_T0088373.1 MGP_CASTEiJ_G0032411.1 mouse_genomes_project 8 12107837 12173044 + Dlgap2 protein_coding processed_transcript MGP_CASTEiJ_T0002256.1 MGP_CASTEiJ_G0002175.1 mouse_genomes_project 8 12360047 12364152 - TEC TEC MGP_CASTEiJ_T0005223.1 MGP_CASTEiJ_G0004436.1 mouse_genomes_project 8 65631417 65634320 - Gm15354 antisense antisense MGP_CASTEiJ_T0090810.1 MGP_CASTEiJ_G0033210.1 mouse_genomes_project 8 122526100 122583527 + MGP_CASTEiJ_P0090810 6430548M08Rik protein_coding protein_coding MGP_CASTEiJ_T0090811.1 MGP_CASTEiJ_G0033210.1 mouse_genomes_project 8 122526100 122573016 + MGP_CASTEiJ_P0090811 6430548M08Rik protein_coding protein_coding MGP_CASTEiJ_T0090812.1 MGP_CASTEiJ_G0033210.1 mouse_genomes_project 8 122526101 122583525 + MGP_CASTEiJ_P0090812 6430548M08Rik protein_coding protein_coding MGP_CASTEiJ_T0090813.1 MGP_CASTEiJ_G0033210.1 mouse_genomes_project 8 122561283 122562343 + MGP_CASTEiJ_P0090813 6430548M08Rik protein_coding protein_coding MGP_CASTEiJ_T0090814.1 MGP_CASTEiJ_G0033210.1 mouse_genomes_project 8 122561528 122570986 + MGP_CASTEiJ_P0090814 6430548M08Rik protein_coding protein_coding MGP_CASTEiJ_T0090815.1 MGP_CASTEiJ_G0033210.1 mouse_genomes_project 8 122561753 122581107 + MGP_CASTEiJ_P0090815 6430548M08Rik protein_coding protein_coding MGP_CASTEiJ_T0090816.1 MGP_CASTEiJ_G0033210.1 mouse_genomes_project 8 122574057 122579592 + 6430548M08Rik protein_coding processed_transcript MGP_CASTEiJ_T0090727.1 MGP_CASTEiJ_G0033181.1 mouse_genomes_project 8 119117318 119132026 - MGP_CASTEiJ_P0090727 Gcsh protein_coding protein_coding MGP_CASTEiJ_T0090728.1 MGP_CASTEiJ_G0033181.1 mouse_genomes_project 8 119121288 119129843 - Gcsh protein_coding processed_transcript MGP_CASTEiJ_T0091174.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129945568 130522275 + MGP_CASTEiJ_P0091174 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091175.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129945731 130522589 + MGP_CASTEiJ_P0091175 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091176.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129945731 130337223 + MGP_CASTEiJ_P0091176 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091177.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129945773 130315044 + Pard3 protein_coding retained_intron MGP_CASTEiJ_T0091178.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129945920 130522275 + MGP_CASTEiJ_P0091178 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091179.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129945934 130266412 + MGP_CASTEiJ_P0091179 Pard3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091180.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129945934 130170402 + MGP_CASTEiJ_P0091180 Pard3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091181.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129945970 130521111 + MGP_CASTEiJ_P0091181 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091182.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129945970 130521111 + MGP_CASTEiJ_P0091182 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091183.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129946020 130329597 + MGP_CASTEiJ_P0091183 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091184.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129946020 130522275 + MGP_CASTEiJ_P0091184 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091185.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129946020 130329597 + MGP_CASTEiJ_P0091185 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091186.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129946020 130329597 + MGP_CASTEiJ_P0091186 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091187.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129946020 130378066 + MGP_CASTEiJ_P0091187 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091188.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129946022 130329528 + MGP_CASTEiJ_P0091188 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091189.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129946029 130303368 + MGP_CASTEiJ_P0091189 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091190.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 129958945 130329528 + MGP_CASTEiJ_P0091190 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091191.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 130192700 130337542 + MGP_CASTEiJ_P0091191 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091192.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 130248697 130254105 + Pard3 protein_coding retained_intron MGP_CASTEiJ_T0091193.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 130249585 130301599 + MGP_CASTEiJ_P0091193 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091194.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 130267536 130277582 + Pard3 protein_coding retained_intron MGP_CASTEiJ_T0091195.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 130289912 130303640 + MGP_CASTEiJ_P0091195 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091196.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 130307740 130337546 + MGP_CASTEiJ_P0091196 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091197.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 130313491 130377957 + Pard3 protein_coding retained_intron MGP_CASTEiJ_T0091198.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 130352167 130377973 + MGP_CASTEiJ_P0091198 Pard3 protein_coding protein_coding MGP_CASTEiJ_T0091199.1 MGP_CASTEiJ_G0033309.1 mouse_genomes_project 8 130487897 130521154 + Pard3 protein_coding processed_transcript MGP_CASTEiJ_T0090211.1 MGP_CASTEiJ_G0032996.1 mouse_genomes_project 8 95622583 95641245 + MGP_CASTEiJ_P0090211 Katnb1 protein_coding protein_coding MGP_CASTEiJ_T0088676.1 MGP_CASTEiJ_G0032529.1 mouse_genomes_project 8 28986271 29000288 + MGP_CASTEiJ_P0088676 Tti2 protein_coding protein_coding MGP_CASTEiJ_T0090621.1 MGP_CASTEiJ_G0033146.1 mouse_genomes_project 8 112702747 112730445 - MGP_CASTEiJ_P0090621 Clec18a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090622.1 MGP_CASTEiJ_G0033146.1 mouse_genomes_project 8 112702747 112730445 - MGP_CASTEiJ_P0090622 Clec18a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090623.1 MGP_CASTEiJ_G0033146.1 mouse_genomes_project 8 112702747 112730445 - MGP_CASTEiJ_P0090623 Clec18a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090624.1 MGP_CASTEiJ_G0033146.1 mouse_genomes_project 8 112715237 112729998 - MGP_CASTEiJ_P0090624 Clec18a protein_coding unknown_likely_coding MGP_CASTEiJ_T0090625.1 MGP_CASTEiJ_G0033146.1 mouse_genomes_project 8 112715244 112730445 - MGP_CASTEiJ_P0090625 Clec18a protein_coding protein_coding MGP_CASTEiJ_T0090626.1 MGP_CASTEiJ_G0033146.1 mouse_genomes_project 8 112715244 112730219 - MGP_CASTEiJ_P0090626 Clec18a protein_coding protein_coding MGP_CASTEiJ_T0090627.1 MGP_CASTEiJ_G0033146.1 mouse_genomes_project 8 112715245 112741536 - MGP_CASTEiJ_P0090627 Clec18a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090628.1 MGP_CASTEiJ_G0033146.1 mouse_genomes_project 8 112715245 112730445 - MGP_CASTEiJ_P0090628 Clec18a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089978.1 MGP_CASTEiJ_G0032922.1 mouse_genomes_project 8 85777726 85906437 - MGP_CASTEiJ_P0089978 Itfg1 protein_coding protein_coding MGP_CASTEiJ_T0089389.1 MGP_CASTEiJ_G0032737.1 mouse_genomes_project 8 70234600 70237418 + MGP_CASTEiJ_P0089389 Rab3a protein_coding protein_coding MGP_CASTEiJ_T0089390.1 MGP_CASTEiJ_G0032737.1 mouse_genomes_project 8 70235201 70236437 + Rab3a protein_coding retained_intron MGP_CASTEiJ_T0090518.1 MGP_CASTEiJ_G0033112.1 mouse_genomes_project 8 108767206 108784526 - MGP_CASTEiJ_P0090518 Nqo1 protein_coding protein_coding MGP_CASTEiJ_T0010665.1 MGP_CASTEiJ_G0008853.1 mouse_genomes_project 8 72266628 72266753 + Gm26237 miRNA miRNA MGP_CASTEiJ_T0090302.1 MGP_CASTEiJ_G0033030.1 mouse_genomes_project 8 105794273 105796400 - MGP_CASTEiJ_P0090302 Fam96b protein_coding protein_coding MGP_CASTEiJ_T0090303.1 MGP_CASTEiJ_G0033030.1 mouse_genomes_project 8 105794275 105796134 - Fam96b protein_coding retained_intron MGP_CASTEiJ_T0090304.1 MGP_CASTEiJ_G0033030.1 mouse_genomes_project 8 105794282 105796136 - MGP_CASTEiJ_P0090304 Fam96b protein_coding protein_coding MGP_CASTEiJ_T0098665.1 MGP_CASTEiJ_G0035596.1 mouse_genomes_project 8 76191109 76191237 - Gm27355 rRNA rRNA MGP_CASTEiJ_T0089634.1 MGP_CASTEiJ_G0032820.1 mouse_genomes_project 8 77879478 77887160 + MGP_CASTEiJ_P0089634 Ttc29 protein_coding protein_coding MGP_CASTEiJ_T0089635.1 MGP_CASTEiJ_G0032820.1 mouse_genomes_project 8 77879483 77887018 + MGP_CASTEiJ_P0089635 Ttc29 protein_coding protein_coding MGP_CASTEiJ_T0089636.1 MGP_CASTEiJ_G0032820.1 mouse_genomes_project 8 77879496 77884204 + Ttc29 protein_coding processed_transcript MGP_CASTEiJ_T0089637.1 MGP_CASTEiJ_G0032820.1 mouse_genomes_project 8 77879523 78085473 + MGP_CASTEiJ_P0089637 Ttc29 protein_coding protein_coding MGP_CASTEiJ_T0089638.1 MGP_CASTEiJ_G0032820.1 mouse_genomes_project 8 77879531 77884148 + Ttc29 protein_coding processed_transcript MGP_CASTEiJ_T0089639.1 MGP_CASTEiJ_G0032820.1 mouse_genomes_project 8 77884980 78084831 + MGP_CASTEiJ_P0089639 Ttc29 protein_coding protein_coding MGP_CASTEiJ_T0089640.1 MGP_CASTEiJ_G0032820.1 mouse_genomes_project 8 77920662 77946897 + Ttc29 protein_coding retained_intron MGP_CASTEiJ_T0089641.1 MGP_CASTEiJ_G0032820.1 mouse_genomes_project 8 78080264 78084922 + Ttc29 protein_coding processed_transcript MGP_CASTEiJ_T0002257.1 MGP_CASTEiJ_G0002176.1 mouse_genomes_project 8 20708885 20709734 + TEC TEC MGP_CASTEiJ_T0089312.1 MGP_CASTEiJ_G0032713.1 mouse_genomes_project 8 69741606 69751197 - MGP_CASTEiJ_P0089312 Ddx49 protein_coding protein_coding MGP_CASTEiJ_T0089313.1 MGP_CASTEiJ_G0032713.1 mouse_genomes_project 8 69741617 69751160 - Ddx49 protein_coding retained_intron MGP_CASTEiJ_T0089314.1 MGP_CASTEiJ_G0032713.1 mouse_genomes_project 8 69742326 69744477 - Ddx49 protein_coding retained_intron MGP_CASTEiJ_T0089315.1 MGP_CASTEiJ_G0032713.1 mouse_genomes_project 8 69743537 69751179 - MGP_CASTEiJ_P0089315 Ddx49 protein_coding unknown_likely_coding MGP_CASTEiJ_T0089316.1 MGP_CASTEiJ_G0032713.1 mouse_genomes_project 8 69744559 69751171 - Ddx49 protein_coding retained_intron MGP_CASTEiJ_T0089317.1 MGP_CASTEiJ_G0032713.1 mouse_genomes_project 8 69749619 69751142 - Ddx49 protein_coding retained_intron MGP_CASTEiJ_T0089469.1 MGP_CASTEiJ_G0032763.1 mouse_genomes_project 8 71036565 71041896 + MGP_CASTEiJ_P0089469 Gtpbp3 protein_coding protein_coding MGP_CASTEiJ_T0089470.1 MGP_CASTEiJ_G0032763.1 mouse_genomes_project 8 71036565 71041896 + MGP_CASTEiJ_P0089470 Gtpbp3 protein_coding protein_coding MGP_CASTEiJ_T0089471.1 MGP_CASTEiJ_G0032763.1 mouse_genomes_project 8 71037183 71041896 + MGP_CASTEiJ_P0089471 Gtpbp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089472.1 MGP_CASTEiJ_G0032763.1 mouse_genomes_project 8 71037190 71047928 + MGP_CASTEiJ_P0089472 Gtpbp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089473.1 MGP_CASTEiJ_G0032763.1 mouse_genomes_project 8 71037196 71038043 + Gtpbp3 protein_coding retained_intron MGP_CASTEiJ_T0089474.1 MGP_CASTEiJ_G0032763.1 mouse_genomes_project 8 71037205 71041896 + Gtpbp3 protein_coding retained_intron MGP_CASTEiJ_T0089475.1 MGP_CASTEiJ_G0032763.1 mouse_genomes_project 8 71037213 71041896 + MGP_CASTEiJ_P0089475 Gtpbp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089476.1 MGP_CASTEiJ_G0032763.1 mouse_genomes_project 8 71037923 71039898 + Gtpbp3 protein_coding retained_intron MGP_CASTEiJ_T0089044.1 MGP_CASTEiJ_G0032641.1 mouse_genomes_project 8 59484685 59558235 - MGP_CASTEiJ_P0089044 Gm10283 protein_coding protein_coding MGP_CASTEiJ_T0091169.1 MGP_CASTEiJ_G0033305.1 mouse_genomes_project 8 129230753 129299519 - MGP_CASTEiJ_P0091169 Tarbp1 protein_coding protein_coding MGP_CASTEiJ_T0088773.1 MGP_CASTEiJ_G0032567.1 mouse_genomes_project 8 38643935 38726606 + MGP_CASTEiJ_P0088773 Micu3 protein_coding protein_coding MGP_CASTEiJ_T0088774.1 MGP_CASTEiJ_G0032567.1 mouse_genomes_project 8 38644538 38696644 + MGP_CASTEiJ_P0088774 Micu3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088775.1 MGP_CASTEiJ_G0032567.1 mouse_genomes_project 8 38644634 38724125 + MGP_CASTEiJ_P0088775 Micu3 protein_coding protein_coding MGP_CASTEiJ_T0088776.1 MGP_CASTEiJ_G0032567.1 mouse_genomes_project 8 38701646 38713701 + Micu3 protein_coding retained_intron MGP_CASTEiJ_T0008943.1 MGP_CASTEiJ_G0007201.1 mouse_genomes_project 8 110572489 110757415 + D030068K23Rik lincRNA lincRNA MGP_CASTEiJ_T0008944.1 MGP_CASTEiJ_G0007201.1 mouse_genomes_project 8 110572490 110732390 + D030068K23Rik lincRNA lincRNA MGP_CASTEiJ_T0008945.1 MGP_CASTEiJ_G0007201.1 mouse_genomes_project 8 110750987 110778242 + D030068K23Rik lincRNA lincRNA MGP_CASTEiJ_T0008925.1 MGP_CASTEiJ_G0007189.1 mouse_genomes_project 8 92722255 92724892 - Gm21817 lincRNA lincRNA MGP_CASTEiJ_T0089772.1 MGP_CASTEiJ_G0032866.1 mouse_genomes_project 8 84024453 84026531 - MGP_CASTEiJ_P0089772 Rln3 protein_coding protein_coding MGP_CASTEiJ_T0090351.1 MGP_CASTEiJ_G0033047.1 mouse_genomes_project 8 106487181 106497598 - MGP_CASTEiJ_P0090351 4931428F04Rik protein_coding protein_coding MGP_CASTEiJ_T0090352.1 MGP_CASTEiJ_G0033047.1 mouse_genomes_project 8 106487181 106497598 - MGP_CASTEiJ_P0090352 4931428F04Rik protein_coding protein_coding MGP_CASTEiJ_T0011397.1 MGP_CASTEiJ_G0009585.1 mouse_genomes_project 8 114380927 114381032 + Gm22664 misc_RNA misc_RNA MGP_CASTEiJ_T0090959.1 MGP_CASTEiJ_G0033241.1 mouse_genomes_project 8 125103973 125177885 - MGP_CASTEiJ_P0090959 Piezo1 protein_coding protein_coding MGP_CASTEiJ_T0090960.1 MGP_CASTEiJ_G0033241.1 mouse_genomes_project 8 125103987 125123224 - MGP_CASTEiJ_P0090960 Piezo1 protein_coding protein_coding MGP_CASTEiJ_T0090961.1 MGP_CASTEiJ_G0033241.1 mouse_genomes_project 8 125103996 125107102 - Piezo1 protein_coding retained_intron MGP_CASTEiJ_T0090962.1 MGP_CASTEiJ_G0033241.1 mouse_genomes_project 8 125104028 125177594 - MGP_CASTEiJ_P0090962 Piezo1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090963.1 MGP_CASTEiJ_G0033241.1 mouse_genomes_project 8 125104257 125123223 - MGP_CASTEiJ_P0090963 Piezo1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090964.1 MGP_CASTEiJ_G0033241.1 mouse_genomes_project 8 125104316 125105340 - Piezo1 protein_coding retained_intron MGP_CASTEiJ_T0090965.1 MGP_CASTEiJ_G0033241.1 mouse_genomes_project 8 125104355 125105016 - Piezo1 protein_coding retained_intron MGP_CASTEiJ_T0090966.1 MGP_CASTEiJ_G0033241.1 mouse_genomes_project 8 125105704 125106207 - Piezo1 protein_coding retained_intron MGP_CASTEiJ_T0090967.1 MGP_CASTEiJ_G0033241.1 mouse_genomes_project 8 125107186 125107946 - Piezo1 protein_coding retained_intron MGP_CASTEiJ_T0090968.1 MGP_CASTEiJ_G0033241.1 mouse_genomes_project 8 125108245 125121542 - MGP_CASTEiJ_P0090968 Piezo1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090578.1 MGP_CASTEiJ_G0033137.1 mouse_genomes_project 8 112323970 112348215 + MGP_CASTEiJ_P0090578 Mtss1l protein_coding protein_coding MGP_CASTEiJ_T0090579.1 MGP_CASTEiJ_G0033137.1 mouse_genomes_project 8 112324216 112347982 + MGP_CASTEiJ_P0090579 Mtss1l protein_coding protein_coding MGP_CASTEiJ_T0090580.1 MGP_CASTEiJ_G0033137.1 mouse_genomes_project 8 112333215 112338797 + Mtss1l protein_coding processed_transcript MGP_CASTEiJ_T0090581.1 MGP_CASTEiJ_G0033137.1 mouse_genomes_project 8 112334139 112344464 + MGP_CASTEiJ_P0090581 Mtss1l protein_coding protein_coding MGP_CASTEiJ_T0090582.1 MGP_CASTEiJ_G0033137.1 mouse_genomes_project 8 112334150 112344884 + MGP_CASTEiJ_P0090582 Mtss1l protein_coding protein_coding MGP_CASTEiJ_T0090583.1 MGP_CASTEiJ_G0033137.1 mouse_genomes_project 8 112343927 112345192 + Mtss1l protein_coding retained_intron MGP_CASTEiJ_T0100069.1 MGP_CASTEiJ_G0036982.1 mouse_genomes_project 8 59143395 59143499 + Gm26164 snRNA snRNA MGP_CASTEiJ_T0090737.1 MGP_CASTEiJ_G0033185.1 mouse_genomes_project 8 119424053 119670650 + MGP_CASTEiJ_P0090737 Cmip protein_coding protein_coding MGP_CASTEiJ_T0090738.1 MGP_CASTEiJ_G0033185.1 mouse_genomes_project 8 119546882 119670650 + MGP_CASTEiJ_P0090738 Cmip protein_coding protein_coding MGP_CASTEiJ_T0010637.1 MGP_CASTEiJ_G0008825.1 mouse_genomes_project 8 10134402 10134532 + Gm38671 miRNA miRNA MGP_CASTEiJ_T0008891.1 MGP_CASTEiJ_G0007168.1 mouse_genomes_project 8 84678643 84682949 + Gm26664 lincRNA lincRNA MGP_CASTEiJ_T0088533.1 MGP_CASTEiJ_G0032486.1 mouse_genomes_project 8 22071330 22093334 - Ido2 protein_coding processed_transcript MGP_CASTEiJ_T0088534.1 MGP_CASTEiJ_G0032486.1 mouse_genomes_project 8 22071902 22114691 - MGP_CASTEiJ_P0088534 Ido2 protein_coding protein_coding MGP_CASTEiJ_T0088535.1 MGP_CASTEiJ_G0032486.1 mouse_genomes_project 8 22072917 22080139 - Ido2 protein_coding retained_intron MGP_CASTEiJ_T0088536.1 MGP_CASTEiJ_G0032486.1 mouse_genomes_project 8 22090197 22093291 - Ido2 protein_coding processed_transcript MGP_CASTEiJ_T0088746.1 MGP_CASTEiJ_G0032558.1 mouse_genomes_project 8 34362660 34400858 - MGP_CASTEiJ_P0088746 Lonrf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088747.1 MGP_CASTEiJ_G0032558.1 mouse_genomes_project 8 34366011 34401079 - MGP_CASTEiJ_P0088747 Lonrf1 protein_coding protein_coding MGP_CASTEiJ_T0090946.1 MGP_CASTEiJ_G0033239.1 mouse_genomes_project 8 125088275 125098298 - MGP_CASTEiJ_P0090946 Rnf166 protein_coding protein_coding MGP_CASTEiJ_T0090947.1 MGP_CASTEiJ_G0033239.1 mouse_genomes_project 8 125088985 125090350 - Rnf166 protein_coding retained_intron MGP_CASTEiJ_T0090948.1 MGP_CASTEiJ_G0033239.1 mouse_genomes_project 8 125090131 125097922 - Rnf166 protein_coding processed_transcript MGP_CASTEiJ_T0089028.1 MGP_CASTEiJ_G0032637.1 mouse_genomes_project 8 56471041 56476197 - MGP_CASTEiJ_P0089028 Sap30 protein_coding protein_coding MGP_CASTEiJ_T0008899.1 MGP_CASTEiJ_G0007175.1 mouse_genomes_project 8 87260519 87350275 + Gm27169 lincRNA lincRNA MGP_CASTEiJ_T0089034.1 MGP_CASTEiJ_G0032639.1 mouse_genomes_project 8 56775906 56987807 - MGP_CASTEiJ_P0089034 Galntl6 protein_coding protein_coding MGP_CASTEiJ_T0089035.1 MGP_CASTEiJ_G0032639.1 mouse_genomes_project 8 56775914 57961728 - MGP_CASTEiJ_P0089035 Galntl6 protein_coding protein_coding MGP_CASTEiJ_T0089036.1 MGP_CASTEiJ_G0032639.1 mouse_genomes_project 8 56797778 56850753 - Galntl6 protein_coding processed_transcript MGP_CASTEiJ_T0089037.1 MGP_CASTEiJ_G0032639.1 mouse_genomes_project 8 57454139 57960715 - Galntl6 protein_coding retained_intron MGP_CASTEiJ_T0089038.1 MGP_CASTEiJ_G0032639.1 mouse_genomes_project 8 57454225 57960664 - MGP_CASTEiJ_P0089038 Galntl6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089039.1 MGP_CASTEiJ_G0032639.1 mouse_genomes_project 8 57454345 57736844 - MGP_CASTEiJ_P0089039 Galntl6 protein_coding protein_coding MGP_CASTEiJ_T0089040.1 MGP_CASTEiJ_G0032639.1 mouse_genomes_project 8 57518092 57736870 - Galntl6 protein_coding processed_transcript MGP_CASTEiJ_T0089041.1 MGP_CASTEiJ_G0032639.1 mouse_genomes_project 8 57558579 57960948 - MGP_CASTEiJ_P0089041 Galntl6 protein_coding protein_coding MGP_CASTEiJ_T0090774.1 MGP_CASTEiJ_G0033199.1 mouse_genomes_project 8 121964892 121971745 - MGP_CASTEiJ_P0090774 Taf1c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090775.1 MGP_CASTEiJ_G0033199.1 mouse_genomes_project 8 121964892 121971745 - MGP_CASTEiJ_P0090775 Taf1c protein_coding protein_coding MGP_CASTEiJ_T0090776.1 MGP_CASTEiJ_G0033199.1 mouse_genomes_project 8 121965723 121966750 - Taf1c protein_coding processed_transcript MGP_CASTEiJ_T0090777.1 MGP_CASTEiJ_G0033199.1 mouse_genomes_project 8 121966291 121967606 - Taf1c protein_coding retained_intron MGP_CASTEiJ_T0090778.1 MGP_CASTEiJ_G0033199.1 mouse_genomes_project 8 121966532 121968472 - Taf1c protein_coding processed_transcript MGP_CASTEiJ_T0088742.1 MGP_CASTEiJ_G0032557.1 mouse_genomes_project 8 34235128 34288600 + MGP_CASTEiJ_P0088742 D8Ertd82e protein_coding unknown_likely_coding MGP_CASTEiJ_T0088743.1 MGP_CASTEiJ_G0032557.1 mouse_genomes_project 8 34235143 34288822 + MGP_CASTEiJ_P0088743 D8Ertd82e protein_coding protein_coding MGP_CASTEiJ_T0088744.1 MGP_CASTEiJ_G0032557.1 mouse_genomes_project 8 34235176 34244096 + D8Ertd82e protein_coding retained_intron MGP_CASTEiJ_T0088745.1 MGP_CASTEiJ_G0032557.1 mouse_genomes_project 8 34235176 34247963 + D8Ertd82e protein_coding retained_intron MGP_CASTEiJ_T0089717.1 MGP_CASTEiJ_G0032851.1 mouse_genomes_project 8 83551148 83555205 + MGP_CASTEiJ_P0089717 Dnajb1 protein_coding protein_coding MGP_CASTEiJ_T0098405.1 MGP_CASTEiJ_G0035336.1 mouse_genomes_project 8 88240655 88241086 - pseudogene pseudogene MGP_CASTEiJ_T0005239.1 MGP_CASTEiJ_G0004450.1 mouse_genomes_project 8 105796241 105806609 + antisense antisense MGP_CASTEiJ_T0090972.1 MGP_CASTEiJ_G0033244.1 mouse_genomes_project 8 125213568 125248361 - MGP_CASTEiJ_P0090972 Galns protein_coding protein_coding MGP_CASTEiJ_T0090698.1 MGP_CASTEiJ_G0033171.1 mouse_genomes_project 8 116100801 116128495 + Vat1l protein_coding processed_transcript MGP_CASTEiJ_T0090699.1 MGP_CASTEiJ_G0033171.1 mouse_genomes_project 8 116100819 116274087 + MGP_CASTEiJ_P0090699 Vat1l protein_coding protein_coding MGP_CASTEiJ_T0090700.1 MGP_CASTEiJ_G0033171.1 mouse_genomes_project 8 116100823 116128489 + MGP_CASTEiJ_P0090700 Vat1l protein_coding protein_coding MGP_CASTEiJ_T0090701.1 MGP_CASTEiJ_G0033171.1 mouse_genomes_project 8 116268044 116274086 + Vat1l protein_coding retained_intron MGP_CASTEiJ_T0101320.1 MGP_CASTEiJ_G0038233.1 mouse_genomes_project 8 69560637 69560763 - Gm25906 snoRNA snoRNA MGP_CASTEiJ_T0010706.1 MGP_CASTEiJ_G0008894.1 mouse_genomes_project 8 113152016 113152139 + Mir1957b miRNA miRNA MGP_CASTEiJ_T0017743.1 MGP_CASTEiJ_G0015041.1 mouse_genomes_project 8 112782461 112799083 - 9430091E24Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017744.1 MGP_CASTEiJ_G0015041.1 mouse_genomes_project 8 112782651 112799104 - 9430091E24Rik processed_transcript processed_transcript MGP_CASTEiJ_T0089489.1 MGP_CASTEiJ_G0032771.1 mouse_genomes_project 8 71152247 71162539 + MGP_CASTEiJ_P0089489 Fam129c protein_coding protein_coding MGP_CASTEiJ_T0089490.1 MGP_CASTEiJ_G0032771.1 mouse_genomes_project 8 71152368 71162752 + MGP_CASTEiJ_P0089490 Fam129c protein_coding unknown_likely_coding MGP_CASTEiJ_T0089491.1 MGP_CASTEiJ_G0032771.1 mouse_genomes_project 8 71152381 71162527 + Fam129c protein_coding retained_intron MGP_CASTEiJ_T0089492.1 MGP_CASTEiJ_G0032771.1 mouse_genomes_project 8 71153771 71155684 + Fam129c protein_coding processed_transcript MGP_CASTEiJ_T0089493.1 MGP_CASTEiJ_G0032771.1 mouse_genomes_project 8 71154505 71156854 + Fam129c protein_coding retained_intron MGP_CASTEiJ_T0089494.1 MGP_CASTEiJ_G0032771.1 mouse_genomes_project 8 71156886 71157563 + Fam129c protein_coding retained_intron MGP_CASTEiJ_T0089495.1 MGP_CASTEiJ_G0032771.1 mouse_genomes_project 8 71156970 71162527 + Fam129c protein_coding retained_intron MGP_CASTEiJ_T0089496.1 MGP_CASTEiJ_G0032771.1 mouse_genomes_project 8 71159363 71162177 + MGP_CASTEiJ_P0089496 Fam129c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089497.1 MGP_CASTEiJ_G0032771.1 mouse_genomes_project 8 71159580 71162536 + MGP_CASTEiJ_P0089497 Fam129c protein_coding protein_coding MGP_CASTEiJ_T0010668.1 MGP_CASTEiJ_G0008856.1 mouse_genomes_project 8 83687016 83687123 - Mir1668 miRNA miRNA MGP_CASTEiJ_T0090132.1 MGP_CASTEiJ_G0032969.1 mouse_genomes_project 8 94502713 94545074 + MGP_CASTEiJ_P0090132 Ogfod1 protein_coding protein_coding MGP_CASTEiJ_T0090133.1 MGP_CASTEiJ_G0032969.1 mouse_genomes_project 8 94502753 94545074 + MGP_CASTEiJ_P0090133 Ogfod1 protein_coding protein_coding MGP_CASTEiJ_T0090134.1 MGP_CASTEiJ_G0032969.1 mouse_genomes_project 8 94502775 94504966 + Ogfod1 protein_coding retained_intron MGP_CASTEiJ_T0090135.1 MGP_CASTEiJ_G0032969.1 mouse_genomes_project 8 94502778 94534910 + Ogfod1 protein_coding processed_transcript MGP_CASTEiJ_T0090136.1 MGP_CASTEiJ_G0032969.1 mouse_genomes_project 8 94502806 94545074 + MGP_CASTEiJ_P0090136 Ogfod1 protein_coding protein_coding MGP_CASTEiJ_T0090137.1 MGP_CASTEiJ_G0032969.1 mouse_genomes_project 8 94502811 94533247 + Ogfod1 protein_coding processed_transcript MGP_CASTEiJ_T0090138.1 MGP_CASTEiJ_G0032969.1 mouse_genomes_project 8 94532194 94534911 + Ogfod1 protein_coding retained_intron MGP_CASTEiJ_T0008838.1 MGP_CASTEiJ_G0007125.1 mouse_genomes_project 8 10388933 10395819 + 2810030D12Rik lincRNA lincRNA MGP_CASTEiJ_T0008839.1 MGP_CASTEiJ_G0007125.1 mouse_genomes_project 8 10388941 10395831 + 2810030D12Rik lincRNA lincRNA MGP_CASTEiJ_T0008840.1 MGP_CASTEiJ_G0007125.1 mouse_genomes_project 8 10388965 10390011 + 2810030D12Rik lincRNA lincRNA MGP_CASTEiJ_T0008841.1 MGP_CASTEiJ_G0007125.1 mouse_genomes_project 8 10389033 10395824 + 2810030D12Rik lincRNA lincRNA MGP_CASTEiJ_T0011381.1 MGP_CASTEiJ_G0009569.1 mouse_genomes_project 8 8794912 8798065 - Gm27854 misc_RNA misc_RNA MGP_CASTEiJ_T0089198.1 MGP_CASTEiJ_G0032683.1 mouse_genomes_project 8 68731970 68732357 - MGP_CASTEiJ_P0089198 protein_coding protein_coding MGP_CASTEiJ_T0090753.1 MGP_CASTEiJ_G0033192.1 mouse_genomes_project 8 121742541 121762601 + MGP_CASTEiJ_P0090753 Mlycd protein_coding protein_coding MGP_CASTEiJ_T0090754.1 MGP_CASTEiJ_G0033192.1 mouse_genomes_project 8 121742561 121762582 + Mlycd protein_coding retained_intron MGP_CASTEiJ_T0100088.1 MGP_CASTEiJ_G0037001.1 mouse_genomes_project 8 108345092 108345188 - Gm22085 snRNA snRNA MGP_CASTEiJ_T0088476.1 MGP_CASTEiJ_G0032467.1 mouse_genomes_project 8 19863430 19882039 + MGP_CASTEiJ_P0088476 Mrps31 protein_coding protein_coding MGP_CASTEiJ_T0089406.1 MGP_CASTEiJ_G0032746.1 mouse_genomes_project 8 70355234 70360393 - MGP_CASTEiJ_P0089406 Ccdc124 protein_coding protein_coding MGP_CASTEiJ_T0101329.1 MGP_CASTEiJ_G0038242.1 mouse_genomes_project 8 87029881 87029998 - Gm24781 snoRNA snoRNA MGP_CASTEiJ_T0010675.1 MGP_CASTEiJ_G0008863.1 mouse_genomes_project 8 84172507 84172596 - Mir181c miRNA miRNA MGP_CASTEiJ_T0100077.1 MGP_CASTEiJ_G0036990.1 mouse_genomes_project 8 78744302 78744409 - Gm22044 snRNA snRNA MGP_CASTEiJ_T0088917.1 MGP_CASTEiJ_G0032601.1 mouse_genomes_project 8 44890254 44892887 - MGP_CASTEiJ_P0088917 Helt protein_coding protein_coding MGP_CASTEiJ_T0089318.1 MGP_CASTEiJ_G0032714.1 mouse_genomes_project 8 69751225 69761537 + MGP_CASTEiJ_P0089318 Cope protein_coding protein_coding MGP_CASTEiJ_T0089319.1 MGP_CASTEiJ_G0032714.1 mouse_genomes_project 8 69751448 69755119 + Cope protein_coding retained_intron MGP_CASTEiJ_T0089320.1 MGP_CASTEiJ_G0032714.1 mouse_genomes_project 8 69751476 69761540 + Cope protein_coding retained_intron MGP_CASTEiJ_T0089321.1 MGP_CASTEiJ_G0032714.1 mouse_genomes_project 8 69751480 69759038 + MGP_CASTEiJ_P0089321 Cope protein_coding protein_coding MGP_CASTEiJ_T0089322.1 MGP_CASTEiJ_G0032714.1 mouse_genomes_project 8 69751500 69755624 + Cope protein_coding retained_intron MGP_CASTEiJ_T0089323.1 MGP_CASTEiJ_G0032714.1 mouse_genomes_project 8 69751503 69761319 + MGP_CASTEiJ_P0089323 Cope protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089324.1 MGP_CASTEiJ_G0032714.1 mouse_genomes_project 8 69754407 69761537 + MGP_CASTEiJ_P0089324 Cope protein_coding protein_coding MGP_CASTEiJ_T0089325.1 MGP_CASTEiJ_G0032714.1 mouse_genomes_project 8 69757222 69761537 + MGP_CASTEiJ_P0089325 Cope protein_coding protein_coding MGP_CASTEiJ_T0088330.1 MGP_CASTEiJ_G0032397.1 mouse_genomes_project 8 10650549 10676425 + MGP_CASTEiJ_P0088330 Tmem255b protein_coding protein_coding MGP_CASTEiJ_T0088331.1 MGP_CASTEiJ_G0032397.1 mouse_genomes_project 8 10650549 10676425 + MGP_CASTEiJ_P0088331 Tmem255b protein_coding protein_coding MGP_CASTEiJ_T0089234.1 MGP_CASTEiJ_G0032695.1 mouse_genomes_project 8 69296878 69316333 - MGP_CASTEiJ_P0089234 Yjefn3 protein_coding protein_coding MGP_CASTEiJ_T0089235.1 MGP_CASTEiJ_G0032695.1 mouse_genomes_project 8 69296878 69300079 - MGP_CASTEiJ_P0089235 Yjefn3 protein_coding protein_coding MGP_CASTEiJ_T0089236.1 MGP_CASTEiJ_G0032695.1 mouse_genomes_project 8 69296880 69297276 - Yjefn3 protein_coding processed_transcript MGP_CASTEiJ_T0089237.1 MGP_CASTEiJ_G0032695.1 mouse_genomes_project 8 69296907 69307757 - MGP_CASTEiJ_P0089237 Yjefn3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088719.1 MGP_CASTEiJ_G0032545.1 mouse_genomes_project 8 32079840 32084501 - Dctn6 protein_coding retained_intron MGP_CASTEiJ_T0088720.1 MGP_CASTEiJ_G0032545.1 mouse_genomes_project 8 32079848 32096881 - MGP_CASTEiJ_P0088720 Dctn6 protein_coding protein_coding MGP_CASTEiJ_T0088721.1 MGP_CASTEiJ_G0032545.1 mouse_genomes_project 8 32079983 32096976 - MGP_CASTEiJ_P0088721 Dctn6 protein_coding protein_coding MGP_CASTEiJ_T0088722.1 MGP_CASTEiJ_G0032545.1 mouse_genomes_project 8 32079998 32096253 - Dctn6 protein_coding processed_transcript MGP_CASTEiJ_T0088723.1 MGP_CASTEiJ_G0032545.1 mouse_genomes_project 8 32080017 32082390 - Dctn6 protein_coding retained_intron MGP_CASTEiJ_T0088724.1 MGP_CASTEiJ_G0032545.1 mouse_genomes_project 8 32080040 32096291 - MGP_CASTEiJ_P0088724 Dctn6 protein_coding protein_coding MGP_CASTEiJ_T0088725.1 MGP_CASTEiJ_G0032545.1 mouse_genomes_project 8 32081976 32086185 - Dctn6 protein_coding retained_intron MGP_CASTEiJ_T0088726.1 MGP_CASTEiJ_G0032545.1 mouse_genomes_project 8 32084160 32096917 - Dctn6 protein_coding retained_intron MGP_CASTEiJ_T0088727.1 MGP_CASTEiJ_G0032545.1 mouse_genomes_project 8 32084374 32096903 - MGP_CASTEiJ_P0088727 Dctn6 protein_coding protein_coding MGP_CASTEiJ_T0088948.1 MGP_CASTEiJ_G0032609.1 mouse_genomes_project 8 46072413 46074629 + MGP_CASTEiJ_P0088948 protein_coding protein_coding MGP_CASTEiJ_T0102602.1 MGP_CASTEiJ_G0039326.1 mouse_genomes_project 8 16628741 16631259 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0089207.1 MGP_CASTEiJ_G0032687.1 mouse_genomes_project 8 69141661 69151129 - MGP_CASTEiJ_P0089207 Zfp963 protein_coding protein_coding MGP_CASTEiJ_T0089209.1 MGP_CASTEiJ_G0032687.1 mouse_genomes_project 8 69142941 69151137 - MGP_CASTEiJ_P0089209 Zfp963 protein_coding protein_coding MGP_CASTEiJ_T0011385.1 MGP_CASTEiJ_G0009573.1 mouse_genomes_project 8 29396305 29396529 - Gm23539 misc_RNA misc_RNA MGP_CASTEiJ_T0008861.1 MGP_CASTEiJ_G0007141.1 mouse_genomes_project 8 33674080 33680414 - Gm16793 lincRNA lincRNA MGP_CASTEiJ_T0101323.1 MGP_CASTEiJ_G0038236.1 mouse_genomes_project 8 75567291 75567418 - Gm22544 snoRNA snoRNA MGP_CASTEiJ_T0088454.1 MGP_CASTEiJ_G0032457.1 mouse_genomes_project 8 19411596 19416172 + MGP_CASTEiJ_P0088454 Ccdc70 protein_coding protein_coding MGP_CASTEiJ_T0088455.1 MGP_CASTEiJ_G0032457.1 mouse_genomes_project 8 19412426 19416196 + MGP_CASTEiJ_P0088455 Ccdc70 protein_coding protein_coding MGP_CASTEiJ_T0089575.1 MGP_CASTEiJ_G0032797.1 mouse_genomes_project 8 72050162 72064896 - MGP_CASTEiJ_P0089575 Cherp protein_coding protein_coding MGP_CASTEiJ_T0089775.1 MGP_CASTEiJ_G0032869.1 mouse_genomes_project 8 84051287 84081414 + MGP_CASTEiJ_P0089775 Rfx1 protein_coding protein_coding MGP_CASTEiJ_T0088441.1 MGP_CASTEiJ_G0032444.1 mouse_genomes_project 8 19119732 19120867 - MGP_CASTEiJ_P0088441 protein_coding protein_coding MGP_CASTEiJ_T0088167.1 MGP_CASTEiJ_G0032351.1 mouse_genomes_project 8 1123280 1139462 - Timm44 protein_coding retained_intron MGP_CASTEiJ_T0088168.1 MGP_CASTEiJ_G0032351.1 mouse_genomes_project 8 1123280 1139490 - MGP_CASTEiJ_P0088168 Timm44 protein_coding protein_coding MGP_CASTEiJ_T0088169.1 MGP_CASTEiJ_G0032351.1 mouse_genomes_project 8 1123298 1139448 - MGP_CASTEiJ_P0088169 Timm44 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088170.1 MGP_CASTEiJ_G0032351.1 mouse_genomes_project 8 1123533 1124285 - Timm44 protein_coding retained_intron MGP_CASTEiJ_T0088171.1 MGP_CASTEiJ_G0032351.1 mouse_genomes_project 8 1123649 1130532 - Timm44 protein_coding retained_intron MGP_CASTEiJ_T0088172.1 MGP_CASTEiJ_G0032351.1 mouse_genomes_project 8 1129599 1130469 - Timm44 protein_coding retained_intron MGP_CASTEiJ_T0088173.1 MGP_CASTEiJ_G0032351.1 mouse_genomes_project 8 1129780 1131149 - Timm44 protein_coding retained_intron MGP_CASTEiJ_T0088174.1 MGP_CASTEiJ_G0032351.1 mouse_genomes_project 8 1130830 1139459 - Timm44 protein_coding processed_transcript MGP_CASTEiJ_T0088175.1 MGP_CASTEiJ_G0032351.1 mouse_genomes_project 8 1130888 1139450 - Timm44 protein_coding retained_intron MGP_CASTEiJ_T0088997.1 MGP_CASTEiJ_G0032628.1 mouse_genomes_project 8 53806013 53896536 - MGP_CASTEiJ_P0088997 protein_coding protein_coding MGP_CASTEiJ_T0088998.1 MGP_CASTEiJ_G0032628.1 mouse_genomes_project 8 53806191 53902200 - MGP_CASTEiJ_P0088998 protein_coding protein_coding MGP_CASTEiJ_T0088999.1 MGP_CASTEiJ_G0032628.1 mouse_genomes_project 8 53806205 53902316 - MGP_CASTEiJ_P0088999 protein_coding protein_coding MGP_CASTEiJ_T0089000.1 MGP_CASTEiJ_G0032628.1 mouse_genomes_project 8 53806324 53825644 - protein_coding retained_intron MGP_CASTEiJ_T0089001.1 MGP_CASTEiJ_G0032628.1 mouse_genomes_project 8 53806324 53902180 - MGP_CASTEiJ_P0089001 protein_coding protein_coding MGP_CASTEiJ_T0089002.1 MGP_CASTEiJ_G0032628.1 mouse_genomes_project 8 53826250 53832621 - protein_coding retained_intron MGP_CASTEiJ_T0089003.1 MGP_CASTEiJ_G0032628.1 mouse_genomes_project 8 53843152 53869519 - MGP_CASTEiJ_P0089003 protein_coding protein_coding MGP_CASTEiJ_T0089004.1 MGP_CASTEiJ_G0032628.1 mouse_genomes_project 8 53843196 53902162 - protein_coding processed_transcript MGP_CASTEiJ_T0089005.1 MGP_CASTEiJ_G0032628.1 mouse_genomes_project 8 53866811 53902160 - MGP_CASTEiJ_P0089005 protein_coding protein_coding MGP_CASTEiJ_T0089006.1 MGP_CASTEiJ_G0032628.1 mouse_genomes_project 8 53867143 53902286 - protein_coding processed_transcript MGP_CASTEiJ_T0089007.1 MGP_CASTEiJ_G0032628.1 mouse_genomes_project 8 53874570 54059235 - MGP_CASTEiJ_P0089007 protein_coding protein_coding MGP_CASTEiJ_T0089008.1 MGP_CASTEiJ_G0032628.1 mouse_genomes_project 8 53877428 53887612 - MGP_CASTEiJ_P0089008 protein_coding protein_coding MGP_CASTEiJ_T0005218.1 MGP_CASTEiJ_G0004432.1 mouse_genomes_project 8 56283130 56286418 - Gm28063 antisense antisense MGP_CASTEiJ_T0005219.1 MGP_CASTEiJ_G0004432.1 mouse_genomes_project 8 56283148 56286418 - Gm28063 antisense antisense MGP_CASTEiJ_T0090551.1 MGP_CASTEiJ_G0033124.1 mouse_genomes_project 8 111253905 111265196 - MGP_CASTEiJ_P0090551 Atxn1l protein_coding protein_coding MGP_CASTEiJ_T0017708.1 MGP_CASTEiJ_G0015029.1 mouse_genomes_project 8 44273227 44289080 + processed_transcript processed_transcript MGP_CASTEiJ_T0090356.1 MGP_CASTEiJ_G0033051.1 mouse_genomes_project 8 106521722 106535190 - MGP_CASTEiJ_P0090356 Lrrc29 protein_coding protein_coding MGP_CASTEiJ_T0090357.1 MGP_CASTEiJ_G0033051.1 mouse_genomes_project 8 106522158 106532267 - MGP_CASTEiJ_P0090357 Lrrc29 protein_coding unknown_likely_coding MGP_CASTEiJ_T0005202.1 MGP_CASTEiJ_G0004419.1 mouse_genomes_project 8 20144761 20154192 + Gm15346 antisense antisense MGP_CASTEiJ_T0088627.1 MGP_CASTEiJ_G0032510.1 mouse_genomes_project 8 23630155 23648205 - MGP_CASTEiJ_P0088627 Fnta protein_coding protein_coding MGP_CASTEiJ_T0090261.1 MGP_CASTEiJ_G0033013.1 mouse_genomes_project 8 99692430 100122068 - MGP_CASTEiJ_P0090261 Cdh8 protein_coding protein_coding MGP_CASTEiJ_T0090262.1 MGP_CASTEiJ_G0033013.1 mouse_genomes_project 8 99692841 100122068 - MGP_CASTEiJ_P0090262 Cdh8 protein_coding protein_coding MGP_CASTEiJ_T0090263.1 MGP_CASTEiJ_G0033013.1 mouse_genomes_project 8 99696738 100122080 - MGP_CASTEiJ_P0090263 Cdh8 protein_coding protein_coding MGP_CASTEiJ_T0090264.1 MGP_CASTEiJ_G0033013.1 mouse_genomes_project 8 99696929 100122112 - MGP_CASTEiJ_P0090264 Cdh8 protein_coding protein_coding MGP_CASTEiJ_T0090265.1 MGP_CASTEiJ_G0033013.1 mouse_genomes_project 8 99696929 100121960 - MGP_CASTEiJ_P0090265 Cdh8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090266.1 MGP_CASTEiJ_G0033013.1 mouse_genomes_project 8 99850084 99972752 - Cdh8 protein_coding retained_intron MGP_CASTEiJ_T0090267.1 MGP_CASTEiJ_G0033013.1 mouse_genomes_project 8 99907224 100122080 - MGP_CASTEiJ_P0090267 Cdh8 protein_coding protein_coding MGP_CASTEiJ_T0091075.1 MGP_CASTEiJ_G0033271.1 mouse_genomes_project 8 126209759 126230291 + MGP_CASTEiJ_P0091075 Gas8 protein_coding protein_coding MGP_CASTEiJ_T0011379.1 MGP_CASTEiJ_G0009567.1 mouse_genomes_project 8 4397586 4397785 + Gm27585 misc_RNA misc_RNA MGP_CASTEiJ_T0089812.1 MGP_CASTEiJ_G0032880.1 mouse_genomes_project 8 84674883 84676406 - MGP_CASTEiJ_P0089812 Ier2 protein_coding protein_coding MGP_CASTEiJ_T0090210.1 MGP_CASTEiJ_G0032995.1 mouse_genomes_project 8 95594422 95619553 + MGP_CASTEiJ_P0090210 Drc7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0010690.1 MGP_CASTEiJ_G0008878.1 mouse_genomes_project 8 95006700 95006760 + Mir7072 miRNA miRNA MGP_CASTEiJ_T0100054.1 MGP_CASTEiJ_G0036967.1 mouse_genomes_project 8 10485817 10485920 - Gm25014 snRNA snRNA MGP_CASTEiJ_T0088499.1 MGP_CASTEiJ_G0032476.1 mouse_genomes_project 8 20328889 20419468 + MGP_CASTEiJ_P0088499 Kat6a protein_coding protein_coding MGP_CASTEiJ_T0088500.1 MGP_CASTEiJ_G0032476.1 mouse_genomes_project 8 20328903 20419468 + MGP_CASTEiJ_P0088500 Kat6a protein_coding protein_coding MGP_CASTEiJ_T0088501.1 MGP_CASTEiJ_G0032476.1 mouse_genomes_project 8 20328959 20416901 + MGP_CASTEiJ_P0088501 Kat6a protein_coding unknown_likely_coding MGP_CASTEiJ_T0088502.1 MGP_CASTEiJ_G0032476.1 mouse_genomes_project 8 20388973 20398829 + Kat6a protein_coding processed_transcript MGP_CASTEiJ_T0101304.1 MGP_CASTEiJ_G0038217.1 mouse_genomes_project 8 41793724 41793854 + Gm22986 snoRNA snoRNA MGP_CASTEiJ_T0005230.1 MGP_CASTEiJ_G0004442.1 mouse_genomes_project 8 77156091 77159420 + 0610038B21Rik antisense antisense MGP_CASTEiJ_T0005231.1 MGP_CASTEiJ_G0004442.1 mouse_genomes_project 8 77158957 77164601 + 0610038B21Rik antisense antisense MGP_CASTEiJ_T0089669.1 MGP_CASTEiJ_G0032832.1 mouse_genomes_project 8 79745286 79770728 - Hhip protein_coding processed_transcript MGP_CASTEiJ_T0089670.1 MGP_CASTEiJ_G0032832.1 mouse_genomes_project 8 79750685 79842526 - MGP_CASTEiJ_P0089670 Hhip protein_coding protein_coding MGP_CASTEiJ_T0088894.1 MGP_CASTEiJ_G0032596.1 mouse_genomes_project 8 44578623 44581577 - MGP_CASTEiJ_P0088894 Ankrd37 protein_coding protein_coding MGP_CASTEiJ_T0088895.1 MGP_CASTEiJ_G0032596.1 mouse_genomes_project 8 44578632 44581577 - Ankrd37 protein_coding processed_transcript MGP_CASTEiJ_T0088896.1 MGP_CASTEiJ_G0032596.1 mouse_genomes_project 8 44578635 44581276 - Ankrd37 protein_coding retained_intron MGP_CASTEiJ_T0088897.1 MGP_CASTEiJ_G0032596.1 mouse_genomes_project 8 44578686 44579582 - Ankrd37 protein_coding processed_transcript MGP_CASTEiJ_T0088898.1 MGP_CASTEiJ_G0032596.1 mouse_genomes_project 8 44579841 44581559 - Ankrd37 protein_coding retained_intron MGP_CASTEiJ_T0015384.1 MGP_CASTEiJ_G0013547.1 mouse_genomes_project 8 78215219 78216386 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005225.1 MGP_CASTEiJ_G0004438.1 mouse_genomes_project 8 67266241 67287482 + Gm15991 antisense antisense MGP_CASTEiJ_T0010662.1 MGP_CASTEiJ_G0008850.1 mouse_genomes_project 8 70419602 70419696 + Mir1969 miRNA miRNA MGP_CASTEiJ_T0090857.1 MGP_CASTEiJ_G0033219.1 mouse_genomes_project 8 123610420 123614197 + MGP_CASTEiJ_P0090857 Foxf1 protein_coding protein_coding MGP_CASTEiJ_T0088733.1 MGP_CASTEiJ_G0032550.1 mouse_genomes_project 8 32844331 32856854 + MGP_CASTEiJ_P0088733 Dusp4 protein_coding protein_coding MGP_CASTEiJ_T0088072.1 MGP_CASTEiJ_G0032324.1 mouse_genomes_project 8 434782 439178 + MGP_CASTEiJ_P0088072 Zfp358 protein_coding protein_coding MGP_CASTEiJ_T0089027.1 MGP_CASTEiJ_G0032636.1 mouse_genomes_project 8 56433679 56465908 + MGP_CASTEiJ_P0089027 Scrg1 protein_coding protein_coding MGP_CASTEiJ_T0015386.1 MGP_CASTEiJ_G0013549.1 mouse_genomes_project 8 79302670 79303646 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101301.1 MGP_CASTEiJ_G0038214.1 mouse_genomes_project 8 37296229 37296362 - Gm23128 snoRNA snoRNA MGP_CASTEiJ_T0008880.1 MGP_CASTEiJ_G0007159.1 mouse_genomes_project 8 74136216 74358640 - lincRNA lincRNA MGP_CASTEiJ_T0008881.1 MGP_CASTEiJ_G0007159.1 mouse_genomes_project 8 74351533 74358613 - lincRNA lincRNA MGP_CASTEiJ_T0089873.1 MGP_CASTEiJ_G0032892.1 mouse_genomes_project 8 84905406 84923726 + MGP_CASTEiJ_P0089873 Syce2 protein_coding protein_coding MGP_CASTEiJ_T0089874.1 MGP_CASTEiJ_G0032892.1 mouse_genomes_project 8 84905406 84924500 + MGP_CASTEiJ_P0089874 Syce2 protein_coding protein_coding MGP_CASTEiJ_T0089875.1 MGP_CASTEiJ_G0032892.1 mouse_genomes_project 8 84905482 84923736 + MGP_CASTEiJ_P0089875 Syce2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089876.1 MGP_CASTEiJ_G0032892.1 mouse_genomes_project 8 84905727 84922258 + Syce2 protein_coding retained_intron MGP_CASTEiJ_T0089244.1 MGP_CASTEiJ_G0032699.1 mouse_genomes_project 8 69439367 69469600 - MGP_CASTEiJ_P0089244 Mau2 protein_coding protein_coding MGP_CASTEiJ_T0089245.1 MGP_CASTEiJ_G0032699.1 mouse_genomes_project 8 69439367 69469649 - MGP_CASTEiJ_P0089245 Mau2 protein_coding protein_coding MGP_CASTEiJ_T0090339.1 MGP_CASTEiJ_G0033043.1 mouse_genomes_project 8 106463964 106471411 - MGP_CASTEiJ_P0090339 Tradd protein_coding protein_coding MGP_CASTEiJ_T0090340.1 MGP_CASTEiJ_G0033043.1 mouse_genomes_project 8 106464869 106465806 - Tradd protein_coding retained_intron MGP_CASTEiJ_T0090341.1 MGP_CASTEiJ_G0033043.1 mouse_genomes_project 8 106464962 106471383 - MGP_CASTEiJ_P0090341 Tradd protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090342.1 MGP_CASTEiJ_G0033043.1 mouse_genomes_project 8 106465442 106471405 - MGP_CASTEiJ_P0090342 Tradd protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0008830.1 MGP_CASTEiJ_G0007118.1 mouse_genomes_project 8 4254729 4301496 + Gm17215 lincRNA lincRNA MGP_CASTEiJ_T0015378.1 MGP_CASTEiJ_G0013541.1 mouse_genomes_project 8 74811610 74812451 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088531.1 MGP_CASTEiJ_G0032484.1 mouse_genomes_project 8 21692272 21703400 + MGP_CASTEiJ_P0088531 protein_coding protein_coding MGP_CASTEiJ_T0090927.1 MGP_CASTEiJ_G0033232.1 mouse_genomes_project 8 124891478 124948888 + MGP_CASTEiJ_P0090927 Zfpm1 protein_coding protein_coding MGP_CASTEiJ_T0090928.1 MGP_CASTEiJ_G0033232.1 mouse_genomes_project 8 124916199 124934677 + Zfpm1 protein_coding processed_transcript MGP_CASTEiJ_T0090929.1 MGP_CASTEiJ_G0033232.1 mouse_genomes_project 8 124945334 124946666 + Zfpm1 protein_coding processed_transcript MGP_CASTEiJ_T0090930.1 MGP_CASTEiJ_G0033232.1 mouse_genomes_project 8 124945422 124947398 + MGP_CASTEiJ_P0090930 Zfpm1 protein_coding protein_coding MGP_CASTEiJ_T0090081.1 MGP_CASTEiJ_G0032951.1 mouse_genomes_project 8 92743148 92746812 + MGP_CASTEiJ_P0090081 Irx5 protein_coding protein_coding MGP_CASTEiJ_T0015402.1 MGP_CASTEiJ_G0013565.1 mouse_genomes_project 8 100872717 100873218 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090322.1 MGP_CASTEiJ_G0033039.1 mouse_genomes_project 8 106320357 106338584 + MGP_CASTEiJ_P0090322 Ces4a protein_coding protein_coding MGP_CASTEiJ_T0089089.1 MGP_CASTEiJ_G0032650.1 mouse_genomes_project 8 61026087 61062844 + MGP_CASTEiJ_P0089089 Ddx60 protein_coding protein_coding MGP_CASTEiJ_T0089090.1 MGP_CASTEiJ_G0032650.1 mouse_genomes_project 8 61026089 61143015 + MGP_CASTEiJ_P0089090 Ddx60 protein_coding protein_coding MGP_CASTEiJ_T0089091.1 MGP_CASTEiJ_G0032650.1 mouse_genomes_project 8 61026089 61143021 + MGP_CASTEiJ_P0089091 Ddx60 protein_coding protein_coding MGP_CASTEiJ_T0089092.1 MGP_CASTEiJ_G0032650.1 mouse_genomes_project 8 61026089 61040548 + MGP_CASTEiJ_P0089092 Ddx60 protein_coding protein_coding MGP_CASTEiJ_T0089093.1 MGP_CASTEiJ_G0032650.1 mouse_genomes_project 8 61085341 61093525 + Ddx60 protein_coding retained_intron MGP_CASTEiJ_T0089094.1 MGP_CASTEiJ_G0032650.1 mouse_genomes_project 8 61127360 61130599 + Ddx60 protein_coding retained_intron MGP_CASTEiJ_T0089095.1 MGP_CASTEiJ_G0032650.1 mouse_genomes_project 8 61131809 61138595 + Ddx60 protein_coding retained_intron MGP_CASTEiJ_T0017745.1 MGP_CASTEiJ_G0015042.1 mouse_genomes_project 8 124989827 124992221 + Gm20681 processed_transcript processed_transcript MGP_CASTEiJ_T0089206.1 MGP_CASTEiJ_G0032686.1 mouse_genomes_project 8 69094925 69099317 - MGP_CASTEiJ_P0089206 Zfp869 protein_coding protein_coding MGP_CASTEiJ_T0090278.1 MGP_CASTEiJ_G0033021.1 mouse_genomes_project 8 105467126 105479309 + MGP_CASTEiJ_P0090278 Cmtm3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0010669.1 MGP_CASTEiJ_G0008857.1 mouse_genomes_project 8 83901629 83901743 - Gm44450 miRNA miRNA MGP_CASTEiJ_T0008903.1 MGP_CASTEiJ_G0007179.1 mouse_genomes_project 8 87538741 87588289 + Gm2694 lincRNA lincRNA MGP_CASTEiJ_T0008904.1 MGP_CASTEiJ_G0007179.1 mouse_genomes_project 8 87538741 87588290 + Gm2694 lincRNA lincRNA MGP_CASTEiJ_T0008905.1 MGP_CASTEiJ_G0007179.1 mouse_genomes_project 8 87538741 87586846 + Gm2694 lincRNA lincRNA MGP_CASTEiJ_T0008906.1 MGP_CASTEiJ_G0007179.1 mouse_genomes_project 8 87538773 87588288 + Gm2694 lincRNA lincRNA MGP_CASTEiJ_T0008907.1 MGP_CASTEiJ_G0007179.1 mouse_genomes_project 8 87539045 87587743 + Gm2694 lincRNA lincRNA MGP_CASTEiJ_T0008908.1 MGP_CASTEiJ_G0007179.1 mouse_genomes_project 8 87539063 87588290 + Gm2694 lincRNA lincRNA MGP_CASTEiJ_T0008909.1 MGP_CASTEiJ_G0007179.1 mouse_genomes_project 8 87539086 87567319 + Gm2694 lincRNA lincRNA MGP_CASTEiJ_T0008900.1 MGP_CASTEiJ_G0007176.1 mouse_genomes_project 8 87411602 87435790 - Gm27207 lincRNA lincRNA MGP_CASTEiJ_T0100073.1 MGP_CASTEiJ_G0036986.1 mouse_genomes_project 8 75823900 75824007 - Gm22509 snRNA snRNA MGP_CASTEiJ_T0005236.1 MGP_CASTEiJ_G0004447.1 mouse_genomes_project 8 94889294 94897056 - Gm15890 antisense antisense MGP_CASTEiJ_T0098411.1 MGP_CASTEiJ_G0035342.1 mouse_genomes_project 8 125065706 125067710 + pseudogene pseudogene MGP_CASTEiJ_T0089477.1 MGP_CASTEiJ_G0032764.1 mouse_genomes_project 8 71046096 71061116 - MGP_CASTEiJ_P0089477 Plvap protein_coding protein_coding MGP_CASTEiJ_T0008953.1 MGP_CASTEiJ_G0007209.1 mouse_genomes_project 8 123380777 123384995 + lincRNA lincRNA MGP_CASTEiJ_T0088350.1 MGP_CASTEiJ_G0032403.1 mouse_genomes_project 8 11016829 11030337 + MGP_CASTEiJ_P0088350 Upf3a protein_coding protein_coding MGP_CASTEiJ_T0015346.1 MGP_CASTEiJ_G0013509.1 mouse_genomes_project 8 10269176 10270099 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011377.1 MGP_CASTEiJ_G0009565.1 mouse_genomes_project 8 955765 956018 - Gm23888 misc_RNA misc_RNA MGP_CASTEiJ_T0088661.1 MGP_CASTEiJ_G0032522.1 mouse_genomes_project 8 25012345 25027780 + MGP_CASTEiJ_P0088661 Eif4ebp1 protein_coding protein_coding MGP_CASTEiJ_T0090570.1 MGP_CASTEiJ_G0033131.1 mouse_genomes_project 8 111635521 111656737 - MGP_CASTEiJ_P0090570 Gm17720 protein_coding protein_coding MGP_CASTEiJ_T0088648.1 MGP_CASTEiJ_G0032516.1 mouse_genomes_project 8 24769531 24778555 + MGP_CASTEiJ_P0088648 Prosc protein_coding protein_coding MGP_CASTEiJ_T0088649.1 MGP_CASTEiJ_G0032516.1 mouse_genomes_project 8 24769531 24783381 + MGP_CASTEiJ_P0088649 Prosc protein_coding protein_coding MGP_CASTEiJ_T0088297.1 MGP_CASTEiJ_G0032387.1 mouse_genomes_project 8 10259718 10287186 - MGP_CASTEiJ_P0088297 Pcid2 protein_coding protein_coding MGP_CASTEiJ_T0088298.1 MGP_CASTEiJ_G0032387.1 mouse_genomes_project 8 10259718 10287186 - MGP_CASTEiJ_P0088298 Pcid2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088299.1 MGP_CASTEiJ_G0032387.1 mouse_genomes_project 8 10262252 10269353 - Pcid2 protein_coding processed_transcript MGP_CASTEiJ_T0088300.1 MGP_CASTEiJ_G0032387.1 mouse_genomes_project 8 10262424 10286540 - Pcid2 protein_coding processed_transcript MGP_CASTEiJ_T0088301.1 MGP_CASTEiJ_G0032387.1 mouse_genomes_project 8 10267956 10280306 - MGP_CASTEiJ_P0088301 Pcid2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088302.1 MGP_CASTEiJ_G0032387.1 mouse_genomes_project 8 10268005 10286530 - MGP_CASTEiJ_P0088302 Pcid2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0015351.1 MGP_CASTEiJ_G0013514.1 mouse_genomes_project 8 17035301 17038839 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091133.1 MGP_CASTEiJ_G0033292.1 mouse_genomes_project 8 127597960 127605382 - MGP_CASTEiJ_P0091133 Exoc8 protein_coding protein_coding MGP_CASTEiJ_T0091080.1 MGP_CASTEiJ_G0033274.1 mouse_genomes_project 8 126481131 126502849 - MGP_CASTEiJ_P0091080 Ccsap protein_coding protein_coding MGP_CASTEiJ_T0091081.1 MGP_CASTEiJ_G0033274.1 mouse_genomes_project 8 126481144 126503536 - MGP_CASTEiJ_P0091081 Ccsap protein_coding protein_coding MGP_CASTEiJ_T0089866.1 MGP_CASTEiJ_G0032890.1 mouse_genomes_project 8 84885679 84888524 - MGP_CASTEiJ_P0089866 protein_coding protein_coding MGP_CASTEiJ_T0088239.1 MGP_CASTEiJ_G0032376.1 mouse_genomes_project 8 8944051 8958935 + MGP_CASTEiJ_P0088239 Tex29 protein_coding protein_coding MGP_CASTEiJ_T0088240.1 MGP_CASTEiJ_G0032376.1 mouse_genomes_project 8 8944188 8947715 + Tex29 protein_coding processed_transcript MGP_CASTEiJ_T0088241.1 MGP_CASTEiJ_G0032376.1 mouse_genomes_project 8 8944491 8958879 + MGP_CASTEiJ_P0088241 Tex29 protein_coding protein_coding MGP_CASTEiJ_T0088242.1 MGP_CASTEiJ_G0032376.1 mouse_genomes_project 8 8945620 8958931 + Tex29 protein_coding processed_transcript MGP_CASTEiJ_T0088450.1 MGP_CASTEiJ_G0032453.1 mouse_genomes_project 8 19362615 19365530 - MGP_CASTEiJ_P0088450 Defb15 protein_coding protein_coding MGP_CASTEiJ_T0089383.1 MGP_CASTEiJ_G0032736.1 mouse_genomes_project 8 70198698 70224812 + MGP_CASTEiJ_P0089383 Pde4c protein_coding protein_coding MGP_CASTEiJ_T0089384.1 MGP_CASTEiJ_G0032736.1 mouse_genomes_project 8 70199042 70229944 + MGP_CASTEiJ_P0089384 Pde4c protein_coding protein_coding MGP_CASTEiJ_T0089385.1 MGP_CASTEiJ_G0032736.1 mouse_genomes_project 8 70199043 70229929 + MGP_CASTEiJ_P0089385 Pde4c protein_coding protein_coding MGP_CASTEiJ_T0089386.1 MGP_CASTEiJ_G0032736.1 mouse_genomes_project 8 70206971 70224659 + Pde4c protein_coding processed_transcript MGP_CASTEiJ_T0089387.1 MGP_CASTEiJ_G0032736.1 mouse_genomes_project 8 70221844 70229231 + Pde4c protein_coding retained_intron MGP_CASTEiJ_T0089388.1 MGP_CASTEiJ_G0032736.1 mouse_genomes_project 8 70226648 70229571 + Pde4c protein_coding retained_intron MGP_CASTEiJ_T0090714.1 MGP_CASTEiJ_G0033175.1 mouse_genomes_project 8 118581602 118592324 + MGP_CASTEiJ_P0090714 Dynlrb2 protein_coding protein_coding MGP_CASTEiJ_T0090603.1 MGP_CASTEiJ_G0033141.1 mouse_genomes_project 8 112502075 112524148 - MGP_CASTEiJ_P0090603 Fuk protein_coding protein_coding MGP_CASTEiJ_T0008896.1 MGP_CASTEiJ_G0007173.1 mouse_genomes_project 8 87168312 87254060 + Gm27246 lincRNA lincRNA MGP_CASTEiJ_T0005264.1 MGP_CASTEiJ_G0004472.1 mouse_genomes_project 8 126986044 126993920 - Gm15775 antisense antisense MGP_CASTEiJ_T0088765.1 MGP_CASTEiJ_G0032563.1 mouse_genomes_project 8 35743964 36982628 - MGP_CASTEiJ_P0088765 Sgcz protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088766.1 MGP_CASTEiJ_G0032563.1 mouse_genomes_project 8 35744220 36982628 - MGP_CASTEiJ_P0088766 Sgcz protein_coding protein_coding MGP_CASTEiJ_T0010655.1 MGP_CASTEiJ_G0008843.1 mouse_genomes_project 8 55544544 55544654 + Gm25992 miRNA miRNA MGP_CASTEiJ_T0090489.1 MGP_CASTEiJ_G0033106.1 mouse_genomes_project 8 108384989 108396737 - MGP_CASTEiJ_P0090489 Cog8 protein_coding protein_coding MGP_CASTEiJ_T0090490.1 MGP_CASTEiJ_G0033106.1 mouse_genomes_project 8 108384995 108396732 - MGP_CASTEiJ_P0090490 Cog8 protein_coding protein_coding MGP_CASTEiJ_T0090492.1 MGP_CASTEiJ_G0033106.1 mouse_genomes_project 8 108388683 108396809 - MGP_CASTEiJ_P0090492 Cog8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090493.1 MGP_CASTEiJ_G0033106.1 mouse_genomes_project 8 108392729 108394305 - Cog8 protein_coding retained_intron MGP_CASTEiJ_T0090494.1 MGP_CASTEiJ_G0033106.1 mouse_genomes_project 8 108392959 108396546 - MGP_CASTEiJ_P0090494 Cog8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098660.1 MGP_CASTEiJ_G0035591.1 mouse_genomes_project 8 46397726 46397850 + n-R5s96 rRNA rRNA MGP_CASTEiJ_T0008832.1 MGP_CASTEiJ_G0007120.1 mouse_genomes_project 8 8042268 8089291 + 9530052E02Rik lincRNA lincRNA MGP_CASTEiJ_T0008833.1 MGP_CASTEiJ_G0007120.1 mouse_genomes_project 8 8084336 8089296 + 9530052E02Rik lincRNA lincRNA MGP_CASTEiJ_T0088777.1 MGP_CASTEiJ_G0032568.1 mouse_genomes_project 8 38766592 38827477 + MGP_CASTEiJ_P0088777 Zdhhc2 protein_coding protein_coding MGP_CASTEiJ_T0088778.1 MGP_CASTEiJ_G0032568.1 mouse_genomes_project 8 38766598 38854063 + MGP_CASTEiJ_P0088778 Zdhhc2 protein_coding protein_coding MGP_CASTEiJ_T0088779.1 MGP_CASTEiJ_G0032568.1 mouse_genomes_project 8 38766599 38811377 + Zdhhc2 protein_coding retained_intron MGP_CASTEiJ_T0088780.1 MGP_CASTEiJ_G0032568.1 mouse_genomes_project 8 38766617 38826021 + MGP_CASTEiJ_P0088780 Zdhhc2 protein_coding protein_coding MGP_CASTEiJ_T0088781.1 MGP_CASTEiJ_G0032568.1 mouse_genomes_project 8 38768113 38798937 + Zdhhc2 protein_coding processed_transcript MGP_CASTEiJ_T0088790.1 MGP_CASTEiJ_G0032568.1 mouse_genomes_project 8 38844346 38854065 + Zdhhc2 protein_coding processed_transcript MGP_CASTEiJ_T0089211.1 MGP_CASTEiJ_G0032689.1 mouse_genomes_project 8 69164549 69179104 - MGP_CASTEiJ_P0089211 Zfp866 protein_coding protein_coding MGP_CASTEiJ_T0090467.1 MGP_CASTEiJ_G0033093.1 mouse_genomes_project 8 107547145 107572845 - MGP_CASTEiJ_P0090467 Smpd3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0101343.1 MGP_CASTEiJ_G0038256.1 mouse_genomes_project 8 120391033 120391163 + Gm25200 snoRNA snoRNA MGP_CASTEiJ_T0091207.1 MGP_CASTEiJ_G0033312.1 mouse_genomes_project 8 131708710 131761739 - MGP_CASTEiJ_P0091207 Gm3952 protein_coding protein_coding MGP_CASTEiJ_T0089167.1 MGP_CASTEiJ_G0032675.1 mouse_genomes_project 8 68110703 68149334 + MGP_CASTEiJ_P0089167 Ints10 protein_coding protein_coding MGP_CASTEiJ_T0089168.1 MGP_CASTEiJ_G0032675.1 mouse_genomes_project 8 68110709 68142860 + MGP_CASTEiJ_P0089168 Ints10 protein_coding protein_coding MGP_CASTEiJ_T0089169.1 MGP_CASTEiJ_G0032675.1 mouse_genomes_project 8 68110730 68117096 + Ints10 protein_coding retained_intron MGP_CASTEiJ_T0089170.1 MGP_CASTEiJ_G0032675.1 mouse_genomes_project 8 68110730 68149332 + MGP_CASTEiJ_P0089170 Ints10 protein_coding protein_coding MGP_CASTEiJ_T0089171.1 MGP_CASTEiJ_G0032675.1 mouse_genomes_project 8 68110748 68117096 + Ints10 protein_coding retained_intron MGP_CASTEiJ_T0089172.1 MGP_CASTEiJ_G0032675.1 mouse_genomes_project 8 68110788 68149332 + MGP_CASTEiJ_P0089172 Ints10 protein_coding protein_coding MGP_CASTEiJ_T0089173.1 MGP_CASTEiJ_G0032675.1 mouse_genomes_project 8 68130669 68133345 + Ints10 protein_coding retained_intron MGP_CASTEiJ_T0089174.1 MGP_CASTEiJ_G0032675.1 mouse_genomes_project 8 68141229 68147625 + MGP_CASTEiJ_P0089174 Ints10 protein_coding protein_coding MGP_CASTEiJ_T0089026.1 MGP_CASTEiJ_G0032635.1 mouse_genomes_project 8 56283126 56286702 + MGP_CASTEiJ_P0089026 Hand2 protein_coding protein_coding MGP_CASTEiJ_T0090268.1 MGP_CASTEiJ_G0033014.1 mouse_genomes_project 8 103597566 103660562 - MGP_CASTEiJ_P0090268 Cdh11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0089533.1 MGP_CASTEiJ_G0032780.1 mouse_genomes_project 8 71548732 71569272 + MGP_CASTEiJ_P0089533 Zfp961 protein_coding protein_coding MGP_CASTEiJ_T0089534.1 MGP_CASTEiJ_G0032780.1 mouse_genomes_project 8 71548742 71569272 + Zfp961 protein_coding processed_transcript MGP_CASTEiJ_T0089535.1 MGP_CASTEiJ_G0032780.1 mouse_genomes_project 8 71548760 71568862 + Zfp961 protein_coding processed_transcript MGP_CASTEiJ_T0089536.1 MGP_CASTEiJ_G0032780.1 mouse_genomes_project 8 71548761 71567220 + Zfp961 protein_coding processed_transcript MGP_CASTEiJ_T0089537.1 MGP_CASTEiJ_G0032780.1 mouse_genomes_project 8 71548764 71566995 + Zfp961 protein_coding processed_transcript MGP_CASTEiJ_T0089538.1 MGP_CASTEiJ_G0032780.1 mouse_genomes_project 8 71548765 71567271 + MGP_CASTEiJ_P0089538 Zfp961 protein_coding protein_coding MGP_CASTEiJ_T0089539.1 MGP_CASTEiJ_G0032780.1 mouse_genomes_project 8 71548771 71567111 + Zfp961 protein_coding processed_transcript MGP_CASTEiJ_T0089540.1 MGP_CASTEiJ_G0032780.1 mouse_genomes_project 8 71548774 71567460 + Zfp961 protein_coding processed_transcript MGP_CASTEiJ_T0089541.1 MGP_CASTEiJ_G0032780.1 mouse_genomes_project 8 71548775 71565186 + Zfp961 protein_coding processed_transcript MGP_CASTEiJ_T0089542.1 MGP_CASTEiJ_G0032780.1 mouse_genomes_project 8 71548775 71567921 + MGP_CASTEiJ_P0089542 Zfp961 protein_coding protein_coding MGP_CASTEiJ_T0089543.1 MGP_CASTEiJ_G0032780.1 mouse_genomes_project 8 71548785 71593269 + Zfp961 protein_coding processed_transcript MGP_CASTEiJ_T0089544.1 MGP_CASTEiJ_G0032780.1 mouse_genomes_project 8 71548785 71570634 + MGP_CASTEiJ_P0089544 Zfp961 protein_coding protein_coding MGP_CASTEiJ_T0089545.1 MGP_CASTEiJ_G0032780.1 mouse_genomes_project 8 71551140 71567118 + Zfp961 protein_coding processed_transcript MGP_CASTEiJ_T0098409.1 MGP_CASTEiJ_G0035340.1 mouse_genomes_project 8 120053659 120054857 + pseudogene pseudogene MGP_CASTEiJ_T0089448.1 MGP_CASTEiJ_G0032756.1 mouse_genomes_project 8 70912598 70925418 - MGP_CASTEiJ_P0089448 Ushbp1 protein_coding protein_coding MGP_CASTEiJ_T0091107.1 MGP_CASTEiJ_G0033284.1 mouse_genomes_project 8 127260859 127305466 + MGP_CASTEiJ_P0091107 Capn9 protein_coding protein_coding MGP_CASTEiJ_T0091108.1 MGP_CASTEiJ_G0033284.1 mouse_genomes_project 8 127260861 127273271 + MGP_CASTEiJ_P0091108 Capn9 protein_coding protein_coding MGP_CASTEiJ_T0091109.1 MGP_CASTEiJ_G0033284.1 mouse_genomes_project 8 127300281 127301377 + Capn9 protein_coding processed_transcript MGP_CASTEiJ_T0005228.1 MGP_CASTEiJ_G0004440.1 mouse_genomes_project 8 67777606 67779134 + Gm15656 antisense antisense MGP_CASTEiJ_T0008959.1 MGP_CASTEiJ_G0007213.1 mouse_genomes_project 8 123807773 123911114 - Gm26815 lincRNA lincRNA MGP_CASTEiJ_T0101345.1 MGP_CASTEiJ_G0038258.1 mouse_genomes_project 8 124255497 124255575 - Gm23299 snoRNA snoRNA MGP_CASTEiJ_T0017736.1 MGP_CASTEiJ_G0015038.1 mouse_genomes_project 8 96363487 96377799 + 4930513N10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017737.1 MGP_CASTEiJ_G0015038.1 mouse_genomes_project 8 96363630 96366898 + 4930513N10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017738.1 MGP_CASTEiJ_G0015038.1 mouse_genomes_project 8 96365692 96377768 + 4930513N10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0090577.1 MGP_CASTEiJ_G0033136.1 mouse_genomes_project 8 112219659 112322891 + MGP_CASTEiJ_P0090577 Vac14 protein_coding protein_coding MGP_CASTEiJ_T0088565.1 MGP_CASTEiJ_G0032493.1 mouse_genomes_project 8 22568928 22574351 + MGP_CASTEiJ_P0088565 Tm2d2 protein_coding protein_coding MGP_CASTEiJ_T0090434.1 MGP_CASTEiJ_G0033083.1 mouse_genomes_project 8 107240016 107247195 - MGP_CASTEiJ_P0090434 Dpep3 protein_coding protein_coding MGP_CASTEiJ_T0090054.1 MGP_CASTEiJ_G0032945.1 mouse_genomes_project 8 91179351 91179828 - MGP_CASTEiJ_P0090054 protein_coding protein_coding MGP_CASTEiJ_T0010714.1 MGP_CASTEiJ_G0008902.1 mouse_genomes_project 8 124571655 124571718 + Mir7237 miRNA miRNA MGP_CASTEiJ_T0088666.1 MGP_CASTEiJ_G0032526.1 mouse_genomes_project 8 26438380 27006551 - MGP_CASTEiJ_P0088666 Unc5d protein_coding protein_coding MGP_CASTEiJ_T0088667.1 MGP_CASTEiJ_G0032526.1 mouse_genomes_project 8 26444430 26648552 - MGP_CASTEiJ_P0088667 Unc5d protein_coding unknown_likely_coding MGP_CASTEiJ_T0088296.1 MGP_CASTEiJ_G0032386.1 mouse_genomes_project 8 10245278 10257667 + MGP_CASTEiJ_P0088296 Proz protein_coding protein_coding MGP_CASTEiJ_T0088386.1 MGP_CASTEiJ_G0032415.1 mouse_genomes_project 8 12346709 12369064 + MGP_CASTEiJ_P0088386 Kbtbd11 protein_coding protein_coding MGP_CASTEiJ_T0088387.1 MGP_CASTEiJ_G0032415.1 mouse_genomes_project 8 12347000 12362823 + Kbtbd11 protein_coding processed_transcript MGP_CASTEiJ_T0088388.1 MGP_CASTEiJ_G0032415.1 mouse_genomes_project 8 12363019 12369064 + MGP_CASTEiJ_P0088388 Kbtbd11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088389.1 MGP_CASTEiJ_G0032415.1 mouse_genomes_project 8 12368119 12368695 + Kbtbd11 protein_coding processed_transcript MGP_CASTEiJ_T0088439.1 MGP_CASTEiJ_G0032442.1 mouse_genomes_project 8 19076275 19077240 + MGP_CASTEiJ_P0088439 Defa26 protein_coding protein_coding MGP_CASTEiJ_T0011382.1 MGP_CASTEiJ_G0009570.1 mouse_genomes_project 8 9493380 9494289 + Gm22207 misc_RNA misc_RNA MGP_CASTEiJ_T0008892.1 MGP_CASTEiJ_G0007169.1 mouse_genomes_project 8 86949019 86949898 + 2010110E17Rik lincRNA lincRNA MGP_CASTEiJ_T0088986.1 MGP_CASTEiJ_G0032622.1 mouse_genomes_project 8 52617893 52631204 + MGP_CASTEiJ_P0088986 Aga protein_coding protein_coding MGP_CASTEiJ_T0089247.1 MGP_CASTEiJ_G0032701.1 mouse_genomes_project 8 69506094 69513215 + MGP_CASTEiJ_P0089247 Tm6sf2 protein_coding protein_coding MGP_CASTEiJ_T0089248.1 MGP_CASTEiJ_G0032701.1 mouse_genomes_project 8 69506102 69513201 + MGP_CASTEiJ_P0089248 Tm6sf2 protein_coding protein_coding MGP_CASTEiJ_T0089249.1 MGP_CASTEiJ_G0032701.1 mouse_genomes_project 8 69507451 69508869 + Tm6sf2 protein_coding retained_intron MGP_CASTEiJ_T0089250.1 MGP_CASTEiJ_G0032701.1 mouse_genomes_project 8 69508583 69511285 + Tm6sf2 protein_coding retained_intron MGP_CASTEiJ_T0089251.1 MGP_CASTEiJ_G0032701.1 mouse_genomes_project 8 69510563 69511769 + Tm6sf2 protein_coding retained_intron MGP_CASTEiJ_T0091094.1 MGP_CASTEiJ_G0033281.1 mouse_genomes_project 8 127033439 127107723 - MGP_CASTEiJ_P0091094 Pgbd5 protein_coding protein_coding MGP_CASTEiJ_T0091095.1 MGP_CASTEiJ_G0033281.1 mouse_genomes_project 8 127033439 127102009 - MGP_CASTEiJ_P0091095 Pgbd5 protein_coding protein_coding MGP_CASTEiJ_T0091096.1 MGP_CASTEiJ_G0033281.1 mouse_genomes_project 8 127033443 127102411 - MGP_CASTEiJ_P0091096 Pgbd5 protein_coding protein_coding MGP_CASTEiJ_T0091097.1 MGP_CASTEiJ_G0033281.1 mouse_genomes_project 8 127034416 127058586 - MGP_CASTEiJ_P0091097 Pgbd5 protein_coding protein_coding MGP_CASTEiJ_T0091098.1 MGP_CASTEiJ_G0033281.1 mouse_genomes_project 8 127035587 127102483 - MGP_CASTEiJ_P0091098 Pgbd5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091099.1 MGP_CASTEiJ_G0033281.1 mouse_genomes_project 8 127036278 127039296 - Pgbd5 protein_coding processed_transcript MGP_CASTEiJ_T0091100.1 MGP_CASTEiJ_G0033281.1 mouse_genomes_project 8 127036294 127038849 - Pgbd5 protein_coding retained_intron MGP_CASTEiJ_T0089963.1 MGP_CASTEiJ_G0032916.1 mouse_genomes_project 8 85363514 85400116 - MGP_CASTEiJ_P0089963 Mylk3 protein_coding protein_coding MGP_CASTEiJ_T0089964.1 MGP_CASTEiJ_G0032916.1 mouse_genomes_project 8 85363657 85419148 - MGP_CASTEiJ_P0089964 Mylk3 protein_coding protein_coding MGP_CASTEiJ_T0089965.1 MGP_CASTEiJ_G0032916.1 mouse_genomes_project 8 85366264 85400139 - MGP_CASTEiJ_P0089965 Mylk3 protein_coding protein_coding MGP_CASTEiJ_T0089966.1 MGP_CASTEiJ_G0032916.1 mouse_genomes_project 8 85394139 85424497 - MGP_CASTEiJ_P0089966 Mylk3 protein_coding protein_coding MGP_CASTEiJ_T0089967.1 MGP_CASTEiJ_G0032916.1 mouse_genomes_project 8 85395312 85419204 - Mylk3 protein_coding retained_intron MGP_CASTEiJ_T0090350.1 MGP_CASTEiJ_G0033046.1 mouse_genomes_project 8 106483222 106488650 + MGP_CASTEiJ_P0090350 Nol3 protein_coding protein_coding MGP_CASTEiJ_T0005240.1 MGP_CASTEiJ_G0004451.1 mouse_genomes_project 8 106787493 106789856 + Gm38250 antisense antisense MGP_CASTEiJ_T0005241.1 MGP_CASTEiJ_G0004451.1 mouse_genomes_project 8 106787520 106799859 + Gm38250 antisense antisense MGP_CASTEiJ_T0101289.1 MGP_CASTEiJ_G0038202.1 mouse_genomes_project 8 12567246 12567379 - Gm24231 snoRNA snoRNA MGP_CASTEiJ_T0089481.1 MGP_CASTEiJ_G0032768.1 mouse_genomes_project 8 71115316 71121985 - MGP_CASTEiJ_P0089481 Nxnl1 protein_coding protein_coding MGP_CASTEiJ_T0089482.1 MGP_CASTEiJ_G0032768.1 mouse_genomes_project 8 71115316 71122033 - MGP_CASTEiJ_P0089482 Nxnl1 protein_coding protein_coding MGP_CASTEiJ_T0089455.1 MGP_CASTEiJ_G0032759.1 mouse_genomes_project 8 70999712 71007543 - MGP_CASTEiJ_P0089455 Abhd8 protein_coding protein_coding MGP_CASTEiJ_T0010688.1 MGP_CASTEiJ_G0008876.1 mouse_genomes_project 8 93337210 93337264 - Gm22151 miRNA miRNA MGP_CASTEiJ_T0015406.1 MGP_CASTEiJ_G0013569.1 mouse_genomes_project 8 112951380 112983549 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008860.1 MGP_CASTEiJ_G0007140.1 mouse_genomes_project 8 32376319 32399160 + lincRNA lincRNA MGP_CASTEiJ_T0008942.1 MGP_CASTEiJ_G0007200.1 mouse_genomes_project 8 107880649 107889476 + 1110028F18Rik lincRNA lincRNA MGP_CASTEiJ_T0089013.1 MGP_CASTEiJ_G0032632.1 mouse_genomes_project 8 55271610 55298316 + MGP_CASTEiJ_P0089013 Hpgd protein_coding protein_coding MGP_CASTEiJ_T0089014.1 MGP_CASTEiJ_G0032632.1 mouse_genomes_project 8 55271648 55279411 + MGP_CASTEiJ_P0089014 Hpgd protein_coding unknown_likely_coding MGP_CASTEiJ_T0088883.1 MGP_CASTEiJ_G0032592.1 mouse_genomes_project 8 44463900 44498134 + MGP_CASTEiJ_P0088883 Pdlim3 protein_coding protein_coding MGP_CASTEiJ_T0088738.1 MGP_CASTEiJ_G0032554.1 mouse_genomes_project 8 33679221 33775929 + MGP_CASTEiJ_P0088738 Mfhas1 protein_coding protein_coding MGP_CASTEiJ_T0088739.1 MGP_CASTEiJ_G0032554.1 mouse_genomes_project 8 33699642 33775217 + Mfhas1 protein_coding processed_transcript MGP_CASTEiJ_T0015371.1 MGP_CASTEiJ_G0013534.1 mouse_genomes_project 8 60434886 60435310 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090089.1 MGP_CASTEiJ_G0032956.1 mouse_genomes_project 8 93386310 93425108 + MGP_CASTEiJ_P0090089 Slc6a2 protein_coding protein_coding MGP_CASTEiJ_T0090090.1 MGP_CASTEiJ_G0032956.1 mouse_genomes_project 8 93387279 93427839 + MGP_CASTEiJ_P0090090 Slc6a2 protein_coding protein_coding MGP_CASTEiJ_T0088966.1 MGP_CASTEiJ_G0032617.1 mouse_genomes_project 8 46528790 46530396 + MGP_CASTEiJ_P0088966 Cldn22 protein_coding protein_coding MGP_CASTEiJ_T0088424.1 MGP_CASTEiJ_G0032429.1 mouse_genomes_project 8 16569441 16571694 + MGP_CASTEiJ_P0088424 Spag11b protein_coding protein_coding MGP_CASTEiJ_T0088425.1 MGP_CASTEiJ_G0032429.1 mouse_genomes_project 8 16569480 16571433 + MGP_CASTEiJ_P0088425 Spag11b protein_coding protein_coding MGP_CASTEiJ_T0100089.1 MGP_CASTEiJ_G0037002.1 mouse_genomes_project 8 111369373 111369481 - Gm25321 snRNA snRNA MGP_CASTEiJ_T0090772.1 MGP_CASTEiJ_G0033198.1 mouse_genomes_project 8 121938833 121965359 + MGP_CASTEiJ_P0090772 Dnaaf1 protein_coding protein_coding MGP_CASTEiJ_T0090773.1 MGP_CASTEiJ_G0033198.1 mouse_genomes_project 8 121938920 121964778 + MGP_CASTEiJ_P0090773 Dnaaf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0089108.1 MGP_CASTEiJ_G0032656.1 mouse_genomes_project 8 63964054 63979955 - MGP_CASTEiJ_P0089108 Msmo1 protein_coding protein_coding MGP_CASTEiJ_T0089109.1 MGP_CASTEiJ_G0032656.1 mouse_genomes_project 8 63964124 63979744 - Msmo1 protein_coding processed_transcript MGP_CASTEiJ_T0089110.1 MGP_CASTEiJ_G0032656.1 mouse_genomes_project 8 63964142 63979741 - Msmo1 protein_coding retained_intron MGP_CASTEiJ_T0089111.1 MGP_CASTEiJ_G0032656.1 mouse_genomes_project 8 63964540 63967902 - Msmo1 protein_coding processed_transcript MGP_CASTEiJ_T0089112.1 MGP_CASTEiJ_G0032656.1 mouse_genomes_project 8 63969686 63977209 - MGP_CASTEiJ_P0089112 Msmo1 protein_coding protein_coding MGP_CASTEiJ_T0089113.1 MGP_CASTEiJ_G0032656.1 mouse_genomes_project 8 63971065 63979711 - Msmo1 protein_coding retained_intron MGP_CASTEiJ_T0089114.1 MGP_CASTEiJ_G0032656.1 mouse_genomes_project 8 63973808 63979711 - MGP_CASTEiJ_P0089114 Msmo1 protein_coding protein_coding MGP_CASTEiJ_T0099017.1 MGP_CASTEiJ_G0035936.1 mouse_genomes_project 8 86045752 86048149 + Hm629797 sense_intronic sense_intronic MGP_CASTEiJ_T0010713.1 MGP_CASTEiJ_G0008901.1 mouse_genomes_project 8 123610643 123610741 - Gm27530 miRNA miRNA MGP_CASTEiJ_T0089579.1 MGP_CASTEiJ_G0032800.1 mouse_genomes_project 8 72161131 72173252 - MGP_CASTEiJ_P0089579 Smim7 protein_coding protein_coding MGP_CASTEiJ_T0089580.1 MGP_CASTEiJ_G0032800.1 mouse_genomes_project 8 72163430 72173213 - MGP_CASTEiJ_P0089580 Smim7 protein_coding protein_coding MGP_CASTEiJ_T0089581.1 MGP_CASTEiJ_G0032800.1 mouse_genomes_project 8 72172751 72173226 - Smim7 protein_coding retained_intron MGP_CASTEiJ_T0090106.1 MGP_CASTEiJ_G0032962.1 mouse_genomes_project 8 93703206 93726556 - MGP_CASTEiJ_P0090106 Ces1f protein_coding protein_coding MGP_CASTEiJ_T0090107.1 MGP_CASTEiJ_G0032962.1 mouse_genomes_project 8 93703553 93705710 - Ces1f protein_coding retained_intron MGP_CASTEiJ_T0090108.1 MGP_CASTEiJ_G0032962.1 mouse_genomes_project 8 93712266 93714162 - Ces1f protein_coding retained_intron MGP_CASTEiJ_T0090109.1 MGP_CASTEiJ_G0032962.1 mouse_genomes_project 8 93712718 93714289 - Ces1f protein_coding retained_intron MGP_CASTEiJ_T0090110.1 MGP_CASTEiJ_G0032962.1 mouse_genomes_project 8 93720841 93722240 - Ces1f protein_coding retained_intron MGP_CASTEiJ_T0090111.1 MGP_CASTEiJ_G0032962.1 mouse_genomes_project 8 93721126 93726536 - MGP_CASTEiJ_P0090111 Ces1f protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011398.1 MGP_CASTEiJ_G0009586.1 mouse_genomes_project 8 123200039 123200294 - Gm24239 misc_RNA misc_RNA MGP_CASTEiJ_T0089592.1 MGP_CASTEiJ_G0032804.1 mouse_genomes_project 8 72348481 72353186 + MGP_CASTEiJ_P0089592 F2rl3 protein_coding protein_coding MGP_CASTEiJ_T0090254.1 MGP_CASTEiJ_G0033010.1 mouse_genomes_project 8 96271757 96364120 - MGP_CASTEiJ_P0090254 Cnot1 protein_coding protein_coding MGP_CASTEiJ_T0090255.1 MGP_CASTEiJ_G0033010.1 mouse_genomes_project 8 96271757 96364120 - MGP_CASTEiJ_P0090255 Cnot1 protein_coding protein_coding MGP_CASTEiJ_T0088458.1 MGP_CASTEiJ_G0032459.1 mouse_genomes_project 8 19500671 19511599 + MGP_CASTEiJ_P0088458 Alg11 protein_coding protein_coding MGP_CASTEiJ_T0088459.1 MGP_CASTEiJ_G0032459.1 mouse_genomes_project 8 19500672 19511599 + MGP_CASTEiJ_P0088459 Alg11 protein_coding protein_coding MGP_CASTEiJ_T0088460.1 MGP_CASTEiJ_G0032459.1 mouse_genomes_project 8 19500690 19505366 + MGP_CASTEiJ_P0088460 Alg11 protein_coding protein_coding MGP_CASTEiJ_T0088461.1 MGP_CASTEiJ_G0032459.1 mouse_genomes_project 8 19508920 19509790 + Alg11 protein_coding processed_transcript MGP_CASTEiJ_T0102606.1 MGP_CASTEiJ_G0039330.1 mouse_genomes_project 8 16980179 16982019 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0088837.1 MGP_CASTEiJ_G0032583.1 mouse_genomes_project 8 41981748 41983865 - MGP_CASTEiJ_P0088837 protein_coding protein_coding MGP_CASTEiJ_T0089024.1 MGP_CASTEiJ_G0032634.1 mouse_genomes_project 8 55534312 55554308 + Fbxo8 protein_coding retained_intron MGP_CASTEiJ_T0089025.1 MGP_CASTEiJ_G0032634.1 mouse_genomes_project 8 55547760 55575358 + MGP_CASTEiJ_P0089025 Fbxo8 protein_coding protein_coding MGP_CASTEiJ_T0098655.1 MGP_CASTEiJ_G0035586.1 mouse_genomes_project 8 2149183 2149302 - n-R5s94 rRNA rRNA MGP_CASTEiJ_T0008842.1 MGP_CASTEiJ_G0007126.1 mouse_genomes_project 8 19221415 19222317 + Gm42808 lincRNA lincRNA MGP_CASTEiJ_T0090666.1 MGP_CASTEiJ_G0033155.1 mouse_genomes_project 8 113354903 113387430 + MGP_CASTEiJ_P0090666 Zfp1 protein_coding protein_coding MGP_CASTEiJ_T0088126.1 MGP_CASTEiJ_G0032341.1 mouse_genomes_project 8 795073 804229 - MGP_CASTEiJ_P0088126 Cd209b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088127.1 MGP_CASTEiJ_G0032341.1 mouse_genomes_project 8 795075 804218 - MGP_CASTEiJ_P0088127 Cd209b protein_coding protein_coding MGP_CASTEiJ_T0088128.1 MGP_CASTEiJ_G0032341.1 mouse_genomes_project 8 796028 804218 - MGP_CASTEiJ_P0088128 Cd209b protein_coding protein_coding MGP_CASTEiJ_T0088129.1 MGP_CASTEiJ_G0032341.1 mouse_genomes_project 8 796099 804198 - MGP_CASTEiJ_P0088129 Cd209b protein_coding protein_coding MGP_CASTEiJ_T0088430.1 MGP_CASTEiJ_G0032434.1 mouse_genomes_project 8 16658065 16664748 + MGP_CASTEiJ_P0088430 Defb46 protein_coding protein_coding MGP_CASTEiJ_T0088481.1 MGP_CASTEiJ_G0032471.1 mouse_genomes_project 8 20081050 20084512 + MGP_CASTEiJ_P0088481 Dkk4 protein_coding protein_coding MGP_CASTEiJ_T0008960.1 MGP_CASTEiJ_G0007214.1 mouse_genomes_project 8 123970435 123976316 + Gm26747 lincRNA lincRNA MGP_CASTEiJ_T0091010.1 MGP_CASTEiJ_G0033256.1 mouse_genomes_project 8 125837752 125859228 + MGP_CASTEiJ_P0091010 Dpep1 protein_coding protein_coding MGP_CASTEiJ_T0088125.1 MGP_CASTEiJ_G0032340.1 mouse_genomes_project 8 760876 768494 - MGP_CASTEiJ_P0088125 Cd209d protein_coding protein_coding MGP_CASTEiJ_T0102609.1 MGP_CASTEiJ_G0039333.1 mouse_genomes_project 8 100406468 100408795 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0091200.1 MGP_CASTEiJ_G0033310.1 mouse_genomes_project 8 131310435 131432656 + MGP_CASTEiJ_P0091200 Nrp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091201.1 MGP_CASTEiJ_G0033310.1 mouse_genomes_project 8 131311192 131464517 + MGP_CASTEiJ_P0091201 Nrp1 protein_coding protein_coding MGP_CASTEiJ_T0091202.1 MGP_CASTEiJ_G0033310.1 mouse_genomes_project 8 131311632 131473318 + MGP_CASTEiJ_P0091202 Nrp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0089392.1 MGP_CASTEiJ_G0032739.1 mouse_genomes_project 8 70241508 70245402 - MGP_CASTEiJ_P0089392 Ifi30 protein_coding protein_coding MGP_CASTEiJ_T0090475.1 MGP_CASTEiJ_G0033099.1 mouse_genomes_project 8 108191077 108203778 + MGP_CASTEiJ_P0090475 Has3 protein_coding protein_coding MGP_CASTEiJ_T0090476.1 MGP_CASTEiJ_G0033099.1 mouse_genomes_project 8 108191671 108202077 + MGP_CASTEiJ_P0090476 Has3 protein_coding protein_coding MGP_CASTEiJ_T0091123.1 MGP_CASTEiJ_G0033288.1 mouse_genomes_project 8 127442039 127454596 - MGP_CASTEiJ_P0091123 Fam89a protein_coding protein_coding MGP_CASTEiJ_T0091124.1 MGP_CASTEiJ_G0033289.1 mouse_genomes_project 8 127499492 127546690 + MGP_CASTEiJ_P0091124 Trim67 protein_coding protein_coding MGP_CASTEiJ_T0091125.1 MGP_CASTEiJ_G0033289.1 mouse_genomes_project 8 127499565 127546851 + MGP_CASTEiJ_P0091125 Trim67 protein_coding protein_coding MGP_CASTEiJ_T0090385.1 MGP_CASTEiJ_G0033060.1 mouse_genomes_project 8 106735027 106740259 + MGP_CASTEiJ_P0090385 Hsd11b2 protein_coding protein_coding MGP_CASTEiJ_T0088218.1 MGP_CASTEiJ_G0032370.1 mouse_genomes_project 8 8569360 8586443 + MGP_CASTEiJ_P0088218 Carkd protein_coding protein_coding MGP_CASTEiJ_T0088219.1 MGP_CASTEiJ_G0032370.1 mouse_genomes_project 8 8569421 8588153 + MGP_CASTEiJ_P0088219 Carkd protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088220.1 MGP_CASTEiJ_G0032370.1 mouse_genomes_project 8 8569422 8586443 + MGP_CASTEiJ_P0088220 Carkd protein_coding protein_coding MGP_CASTEiJ_T0088221.1 MGP_CASTEiJ_G0032370.1 mouse_genomes_project 8 8569447 8580210 + Carkd protein_coding retained_intron MGP_CASTEiJ_T0088222.1 MGP_CASTEiJ_G0032370.1 mouse_genomes_project 8 8569487 8583382 + Carkd protein_coding retained_intron MGP_CASTEiJ_T0088223.1 MGP_CASTEiJ_G0032370.1 mouse_genomes_project 8 8569507 8586199 + MGP_CASTEiJ_P0088223 Carkd protein_coding protein_coding MGP_CASTEiJ_T0088224.1 MGP_CASTEiJ_G0032370.1 mouse_genomes_project 8 8583107 8586423 + Carkd protein_coding retained_intron MGP_CASTEiJ_T0088363.1 MGP_CASTEiJ_G0032410.1 mouse_genomes_project 8 11362725 11367374 + MGP_CASTEiJ_P0088363 protein_coding protein_coding MGP_CASTEiJ_T0010676.1 MGP_CASTEiJ_G0008864.1 mouse_genomes_project 8 84204642 84204717 + Mir23a miRNA miRNA MGP_CASTEiJ_T0098658.1 MGP_CASTEiJ_G0035589.1 mouse_genomes_project 8 33853659 33853773 + Gm22216 rRNA rRNA MGP_CASTEiJ_T0008958.1 MGP_CASTEiJ_G0007212.1 mouse_genomes_project 8 123738439 123741550 - 5033426O07Rik lincRNA lincRNA MGP_CASTEiJ_T0088834.1 MGP_CASTEiJ_G0032580.1 mouse_genomes_project 8 41536401 41548019 - MGP_CASTEiJ_P0088834 Triml1 protein_coding protein_coding MGP_CASTEiJ_T0090435.1 MGP_CASTEiJ_G0033084.1 mouse_genomes_project 8 107252562 107259357 - MGP_CASTEiJ_P0090435 Dpep2 protein_coding protein_coding MGP_CASTEiJ_T0090436.1 MGP_CASTEiJ_G0033084.1 mouse_genomes_project 8 107252563 107265095 - MGP_CASTEiJ_P0090436 Dpep2 protein_coding protein_coding MGP_CASTEiJ_T0090437.1 MGP_CASTEiJ_G0033084.1 mouse_genomes_project 8 107252568 107259367 - MGP_CASTEiJ_P0090437 Dpep2 protein_coding protein_coding MGP_CASTEiJ_T0090438.1 MGP_CASTEiJ_G0033084.1 mouse_genomes_project 8 107255362 107259330 - Dpep2 protein_coding retained_intron MGP_CASTEiJ_T0090439.1 MGP_CASTEiJ_G0033084.1 mouse_genomes_project 8 107256114 107259358 - Dpep2 protein_coding retained_intron MGP_CASTEiJ_T0088693.1 MGP_CASTEiJ_G0032539.1 mouse_genomes_project 8 31542601 31564285 + MGP_CASTEiJ_P0088693 Ppp2cb protein_coding protein_coding MGP_CASTEiJ_T0090031.1 MGP_CASTEiJ_G0032936.1 mouse_genomes_project 8 88455072 88456951 - Brd7 protein_coding processed_transcript MGP_CASTEiJ_T0090032.1 MGP_CASTEiJ_G0032936.1 mouse_genomes_project 8 88455080 88486577 - MGP_CASTEiJ_P0090032 Brd7 protein_coding protein_coding MGP_CASTEiJ_T0090033.1 MGP_CASTEiJ_G0032936.1 mouse_genomes_project 8 88456818 88457953 - Brd7 protein_coding processed_transcript MGP_CASTEiJ_T0090034.1 MGP_CASTEiJ_G0032936.1 mouse_genomes_project 8 88456837 88459517 - Brd7 protein_coding retained_intron MGP_CASTEiJ_T0090035.1 MGP_CASTEiJ_G0032936.1 mouse_genomes_project 8 88456917 88467213 - Brd7 protein_coding processed_transcript MGP_CASTEiJ_T0090036.1 MGP_CASTEiJ_G0032936.1 mouse_genomes_project 8 88457580 88467135 - Brd7 protein_coding processed_transcript MGP_CASTEiJ_T0090037.1 MGP_CASTEiJ_G0032936.1 mouse_genomes_project 8 88481923 88486398 - Brd7 protein_coding processed_transcript MGP_CASTEiJ_T0088847.1 MGP_CASTEiJ_G0032586.1 mouse_genomes_project 8 43761755 43781691 - MGP_CASTEiJ_P0088847 F11 protein_coding protein_coding MGP_CASTEiJ_T0008910.1 MGP_CASTEiJ_G0007180.1 mouse_genomes_project 8 87541985 87558802 - Gm27016 lincRNA lincRNA MGP_CASTEiJ_T0088503.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20454310 20650892 + MGP_CASTEiJ_P0088503 Ank1 protein_coding protein_coding MGP_CASTEiJ_T0088504.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20454348 20651452 + MGP_CASTEiJ_P0088504 Ank1 protein_coding protein_coding MGP_CASTEiJ_T0088505.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20454602 20649271 + MGP_CASTEiJ_P0088505 Ank1 protein_coding protein_coding MGP_CASTEiJ_T0088506.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20517001 20649753 + MGP_CASTEiJ_P0088506 Ank1 protein_coding protein_coding MGP_CASTEiJ_T0088507.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20517030 20650240 + MGP_CASTEiJ_P0088507 Ank1 protein_coding protein_coding MGP_CASTEiJ_T0088508.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20517133 20650240 + MGP_CASTEiJ_P0088508 Ank1 protein_coding protein_coding MGP_CASTEiJ_T0088509.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20541566 20651455 + MGP_CASTEiJ_P0088509 Ank1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088510.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20541582 20651455 + MGP_CASTEiJ_P0088510 Ank1 protein_coding protein_coding MGP_CASTEiJ_T0088511.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20541618 20651455 + MGP_CASTEiJ_P0088511 Ank1 protein_coding protein_coding MGP_CASTEiJ_T0088512.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20541832 20650647 + MGP_CASTEiJ_P0088512 Ank1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088513.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20541832 20650647 + MGP_CASTEiJ_P0088513 Ank1 protein_coding protein_coding MGP_CASTEiJ_T0088514.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20579153 20624283 + MGP_CASTEiJ_P0088514 Ank1 protein_coding protein_coding MGP_CASTEiJ_T0088515.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20608910 20627679 + Ank1 protein_coding retained_intron MGP_CASTEiJ_T0088516.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20639804 20650238 + MGP_CASTEiJ_P0088516 Ank1 protein_coding protein_coding MGP_CASTEiJ_T0088517.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20639879 20649658 + MGP_CASTEiJ_P0088517 Ank1 protein_coding protein_coding MGP_CASTEiJ_T0088518.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20640051 20649269 + MGP_CASTEiJ_P0088518 Ank1 protein_coding protein_coding MGP_CASTEiJ_T0088519.1 MGP_CASTEiJ_G0032477.1 mouse_genomes_project 8 20640870 20649333 + Ank1 protein_coding retained_intron MGP_CASTEiJ_T0088808.1 MGP_CASTEiJ_G0032574.1 mouse_genomes_project 8 39281579 39298223 + Pdgfrl protein_coding retained_intron MGP_CASTEiJ_T0088809.1 MGP_CASTEiJ_G0032574.1 mouse_genomes_project 8 39281595 39349789 + MGP_CASTEiJ_P0088809 Pdgfrl protein_coding protein_coding MGP_CASTEiJ_T0102604.1 MGP_CASTEiJ_G0039328.1 mouse_genomes_project 8 16793840 16881909 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0089922.1 MGP_CASTEiJ_G0032904.1 mouse_genomes_project 8 85079973 85083394 + MGP_CASTEiJ_P0089922 2310036O22Rik protein_coding protein_coding MGP_CASTEiJ_T0089015.1 MGP_CASTEiJ_G0032633.1 mouse_genomes_project 8 55512934 55528672 - MGP_CASTEiJ_P0089015 Cep44 protein_coding protein_coding MGP_CASTEiJ_T0089016.1 MGP_CASTEiJ_G0032633.1 mouse_genomes_project 8 55512934 55534080 - MGP_CASTEiJ_P0089016 Cep44 protein_coding protein_coding MGP_CASTEiJ_T0089017.1 MGP_CASTEiJ_G0032633.1 mouse_genomes_project 8 55522770 55534567 - MGP_CASTEiJ_P0089017 Cep44 protein_coding unknown_likely_coding MGP_CASTEiJ_T0089018.1 MGP_CASTEiJ_G0032633.1 mouse_genomes_project 8 55526103 55534066 - MGP_CASTEiJ_P0089018 Cep44 protein_coding protein_coding MGP_CASTEiJ_T0089019.1 MGP_CASTEiJ_G0032633.1 mouse_genomes_project 8 55527401 55534022 - MGP_CASTEiJ_P0089019 Cep44 protein_coding protein_coding MGP_CASTEiJ_T0089020.1 MGP_CASTEiJ_G0032633.1 mouse_genomes_project 8 55527468 55534095 - MGP_CASTEiJ_P0089020 Cep44 protein_coding protein_coding MGP_CASTEiJ_T0089021.1 MGP_CASTEiJ_G0032633.1 mouse_genomes_project 8 55528658 55534270 - MGP_CASTEiJ_P0089021 Cep44 protein_coding protein_coding MGP_CASTEiJ_T0089022.1 MGP_CASTEiJ_G0032633.1 mouse_genomes_project 8 55532217 55533493 - Cep44 protein_coding processed_transcript MGP_CASTEiJ_T0089023.1 MGP_CASTEiJ_G0032633.1 mouse_genomes_project 8 55532565 55534026 - Cep44 protein_coding processed_transcript MGP_CASTEiJ_T0088964.1 MGP_CASTEiJ_G0032615.1 mouse_genomes_project 8 46388425 46390181 + MGP_CASTEiJ_P0088964 protein_coding protein_coding MGP_CASTEiJ_T0090668.1 MGP_CASTEiJ_G0033157.1 mouse_genomes_project 8 113430499 113463480 - MGP_CASTEiJ_P0090668 Bcar1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090669.1 MGP_CASTEiJ_G0033157.1 mouse_genomes_project 8 113430499 113451823 - MGP_CASTEiJ_P0090669 Bcar1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090670.1 MGP_CASTEiJ_G0033157.1 mouse_genomes_project 8 113430516 113463603 - MGP_CASTEiJ_P0090670 Bcar1 protein_coding protein_coding MGP_CASTEiJ_T0088202.1 MGP_CASTEiJ_G0032361.1 mouse_genomes_project 8 6121138 6703595 - MGP_CASTEiJ_P0088202 Fam155a protein_coding protein_coding MGP_CASTEiJ_T0005250.1 MGP_CASTEiJ_G0004459.1 mouse_genomes_project 8 116500480 116504082 - Gm16116 antisense antisense MGP_CASTEiJ_T0089457.1 MGP_CASTEiJ_G0032761.1 mouse_genomes_project 8 71016229 71023127 + Dda1 protein_coding processed_transcript MGP_CASTEiJ_T0089458.1 MGP_CASTEiJ_G0032761.1 mouse_genomes_project 8 71016229 71019271 + Dda1 protein_coding processed_transcript MGP_CASTEiJ_T0089459.1 MGP_CASTEiJ_G0032761.1 mouse_genomes_project 8 71016229 71023127 + Dda1 protein_coding processed_transcript MGP_CASTEiJ_T0089460.1 MGP_CASTEiJ_G0032761.1 mouse_genomes_project 8 71016229 71019400 + Dda1 protein_coding retained_intron MGP_CASTEiJ_T0089461.1 MGP_CASTEiJ_G0032761.1 mouse_genomes_project 8 71016229 71023127 + MGP_CASTEiJ_P0089461 Dda1 protein_coding protein_coding MGP_CASTEiJ_T0089462.1 MGP_CASTEiJ_G0032761.1 mouse_genomes_project 8 71016229 71023127 + MGP_CASTEiJ_P0089462 Dda1 protein_coding protein_coding MGP_CASTEiJ_T0089463.1 MGP_CASTEiJ_G0032761.1 mouse_genomes_project 8 71016235 71023127 + MGP_CASTEiJ_P0089463 Dda1 protein_coding protein_coding MGP_CASTEiJ_T0089464.1 MGP_CASTEiJ_G0032761.1 mouse_genomes_project 8 71016241 71019807 + Dda1 protein_coding retained_intron MGP_CASTEiJ_T0089465.1 MGP_CASTEiJ_G0032761.1 mouse_genomes_project 8 71016241 71022003 + Dda1 protein_coding retained_intron MGP_CASTEiJ_T0089466.1 MGP_CASTEiJ_G0032761.1 mouse_genomes_project 8 71016309 71019640 + Dda1 protein_coding retained_intron MGP_CASTEiJ_T0089467.1 MGP_CASTEiJ_G0032761.1 mouse_genomes_project 8 71017435 71023127 + Dda1 protein_coding processed_transcript MGP_CASTEiJ_T0098654.1 MGP_CASTEiJ_G0035585.1 mouse_genomes_project 8 1902034 1902153 - n-R5s93 rRNA rRNA MGP_CASTEiJ_T0091168.1 MGP_CASTEiJ_G0033304.1 mouse_genomes_project 8 129226561 129229508 + MGP_CASTEiJ_P0091168 Coa6 protein_coding protein_coding MGP_CASTEiJ_T0010657.1 MGP_CASTEiJ_G0008845.1 mouse_genomes_project 8 64354932 64355016 - Gm23419 miRNA miRNA MGP_CASTEiJ_T0088678.1 MGP_CASTEiJ_G0032531.1 mouse_genomes_project 8 29022660 29077670 + MGP_CASTEiJ_P0088678 Fut10 protein_coding protein_coding MGP_CASTEiJ_T0088679.1 MGP_CASTEiJ_G0032531.1 mouse_genomes_project 8 29022675 29105205 + MGP_CASTEiJ_P0088679 Fut10 protein_coding protein_coding MGP_CASTEiJ_T0088680.1 MGP_CASTEiJ_G0032531.1 mouse_genomes_project 8 29036516 29075905 + Fut10 protein_coding processed_transcript MGP_CASTEiJ_T0090471.1 MGP_CASTEiJ_G0033097.1 mouse_genomes_project 8 107899501 107967607 + MGP_CASTEiJ_P0090471 Cdh1 protein_coding protein_coding MGP_CASTEiJ_T0090472.1 MGP_CASTEiJ_G0033097.1 mouse_genomes_project 8 107899529 107966723 + MGP_CASTEiJ_P0090472 Cdh1 protein_coding protein_coding MGP_CASTEiJ_T0090473.1 MGP_CASTEiJ_G0033097.1 mouse_genomes_project 8 107900293 107951641 + Cdh1 protein_coding processed_transcript MGP_CASTEiJ_T0089382.1 MGP_CASTEiJ_G0032735.1 mouse_genomes_project 8 70193442 70197710 + MGP_CASTEiJ_P0089382 Gm3336 protein_coding protein_coding MGP_CASTEiJ_T0015364.1 MGP_CASTEiJ_G0013527.1 mouse_genomes_project 8 39199297 39203323 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088946.1 MGP_CASTEiJ_G0032608.1 mouse_genomes_project 8 45821005 46004948 - MGP_CASTEiJ_P0088946 Stox2 protein_coding protein_coding MGP_CASTEiJ_T0088947.1 MGP_CASTEiJ_G0032608.1 mouse_genomes_project 8 45823873 45937770 - MGP_CASTEiJ_P0088947 Stox2 protein_coding protein_coding MGP_CASTEiJ_T0100085.1 MGP_CASTEiJ_G0036998.1 mouse_genomes_project 8 99346492 99346615 - Gm23494 snRNA snRNA MGP_CASTEiJ_T0089011.1 MGP_CASTEiJ_G0032631.1 mouse_genomes_project 8 54896016 55010563 + Glra3 protein_coding processed_transcript MGP_CASTEiJ_T0089012.1 MGP_CASTEiJ_G0032631.1 mouse_genomes_project 8 54896065 55102221 + MGP_CASTEiJ_P0089012 Glra3 protein_coding protein_coding MGP_CASTEiJ_T0090779.1 MGP_CASTEiJ_G0033200.1 mouse_genomes_project 8 121981012 121987158 + MGP_CASTEiJ_P0090779 Adad2 protein_coding protein_coding MGP_CASTEiJ_T0088532.1 MGP_CASTEiJ_G0032485.1 mouse_genomes_project 8 21972054 21973862 - MGP_CASTEiJ_P0088532 1810011O10Rik protein_coding protein_coding MGP_CASTEiJ_T0091164.1 MGP_CASTEiJ_G0033301.1 mouse_genomes_project 8 128694898 128731753 + MGP_CASTEiJ_P0091164 BC021891 protein_coding protein_coding MGP_CASTEiJ_T0091165.1 MGP_CASTEiJ_G0033301.1 mouse_genomes_project 8 128695082 128731759 + MGP_CASTEiJ_P0091165 BC021891 protein_coding unknown_likely_coding MGP_CASTEiJ_T0008879.1 MGP_CASTEiJ_G0007158.1 mouse_genomes_project 8 72084135 72096701 + Gm17435 lincRNA lincRNA MGP_CASTEiJ_T0089694.1 MGP_CASTEiJ_G0032840.1 mouse_genomes_project 8 82684500 82694990 - MGP_CASTEiJ_P0089694 Zfp330 protein_coding protein_coding MGP_CASTEiJ_T0089614.1 MGP_CASTEiJ_G0032812.1 mouse_genomes_project 8 75006424 75524200 + MGP_CASTEiJ_P0089614 1700007B14Rik protein_coding protein_coding MGP_CASTEiJ_T0089615.1 MGP_CASTEiJ_G0032812.1 mouse_genomes_project 8 75006713 75524225 + MGP_CASTEiJ_P0089615 1700007B14Rik protein_coding protein_coding MGP_CASTEiJ_T0088474.1 MGP_CASTEiJ_G0032465.1 mouse_genomes_project 8 19729048 19822146 + MGP_CASTEiJ_P0088474 Tpte protein_coding protein_coding MGP_CASTEiJ_T0090474.1 MGP_CASTEiJ_G0033098.1 mouse_genomes_project 8 107977539 108166946 + MGP_CASTEiJ_P0090474 Tango6 protein_coding protein_coding MGP_CASTEiJ_T0090805.1 MGP_CASTEiJ_G0033209.1 mouse_genomes_project 8 122486462 122511262 - MGP_CASTEiJ_P0090805 Zdhhc7 protein_coding protein_coding MGP_CASTEiJ_T0090806.1 MGP_CASTEiJ_G0033209.1 mouse_genomes_project 8 122487768 122494149 - Zdhhc7 protein_coding retained_intron MGP_CASTEiJ_T0090807.1 MGP_CASTEiJ_G0033209.1 mouse_genomes_project 8 122492547 122495387 - Zdhhc7 protein_coding retained_intron MGP_CASTEiJ_T0090808.1 MGP_CASTEiJ_G0033209.1 mouse_genomes_project 8 122492737 122495580 - Zdhhc7 protein_coding retained_intron MGP_CASTEiJ_T0090809.1 MGP_CASTEiJ_G0033209.1 mouse_genomes_project 8 122502599 122510852 - Zdhhc7 protein_coding processed_transcript MGP_CASTEiJ_T0015359.1 MGP_CASTEiJ_G0013522.1 mouse_genomes_project 8 29052493 29052952 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015347.1 MGP_CASTEiJ_G0013510.1 mouse_genomes_project 8 12432019 12433052 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090363.1 MGP_CASTEiJ_G0033053.1 mouse_genomes_project 8 106538079 106557848 - Fhod1 protein_coding retained_intron MGP_CASTEiJ_T0090364.1 MGP_CASTEiJ_G0033053.1 mouse_genomes_project 8 106538079 106557892 - MGP_CASTEiJ_P0090364 Fhod1 protein_coding protein_coding MGP_CASTEiJ_T0090365.1 MGP_CASTEiJ_G0033053.1 mouse_genomes_project 8 106539856 106540483 - Fhod1 protein_coding retained_intron MGP_CASTEiJ_T0090366.1 MGP_CASTEiJ_G0033053.1 mouse_genomes_project 8 106546719 106548082 - Fhod1 protein_coding retained_intron MGP_CASTEiJ_T0005211.1 MGP_CASTEiJ_G0004425.1 mouse_genomes_project 8 39400047 39402375 + Gm16192 antisense antisense MGP_CASTEiJ_T0090945.1 MGP_CASTEiJ_G0033238.1 mouse_genomes_project 8 125076335 125082814 - MGP_CASTEiJ_P0090945 Snai3 protein_coding protein_coding MGP_CASTEiJ_T0010696.1 MGP_CASTEiJ_G0008884.1 mouse_genomes_project 8 106838725 106838833 + Mir1966 miRNA miRNA MGP_CASTEiJ_T0099020.1 MGP_CASTEiJ_G0035939.1 mouse_genomes_project 8 124509781 124510446 - sense_intronic sense_intronic MGP_CASTEiJ_T0090388.1 MGP_CASTEiJ_G0033062.1 mouse_genomes_project 8 106787867 106789466 - MGP_CASTEiJ_P0090388 Agrp protein_coding protein_coding MGP_CASTEiJ_T0090389.1 MGP_CASTEiJ_G0033062.1 mouse_genomes_project 8 106787867 106863235 - MGP_CASTEiJ_P0090389 Agrp protein_coding protein_coding MGP_CASTEiJ_T0090390.1 MGP_CASTEiJ_G0033062.1 mouse_genomes_project 8 106787967 106802953 - MGP_CASTEiJ_P0090390 Agrp protein_coding protein_coding MGP_CASTEiJ_T0010715.1 MGP_CASTEiJ_G0008903.1 mouse_genomes_project 8 125261338 125261458 - Mir6396 miRNA miRNA MGP_CASTEiJ_T0008895.1 MGP_CASTEiJ_G0007172.1 mouse_genomes_project 8 87147017 87154725 + Gm5118 lincRNA lincRNA MGP_CASTEiJ_T0088824.1 MGP_CASTEiJ_G0032576.1 mouse_genomes_project 8 39552368 39578222 - MGP_CASTEiJ_P0088824 Fgl1 protein_coding protein_coding MGP_CASTEiJ_T0088825.1 MGP_CASTEiJ_G0032576.1 mouse_genomes_project 8 39560888 39578219 - Fgl1 protein_coding retained_intron MGP_CASTEiJ_T0090976.1 MGP_CASTEiJ_G0033248.1 mouse_genomes_project 8 125267944 125345347 - MGP_CASTEiJ_P0090976 Cbfa2t3 protein_coding protein_coding MGP_CASTEiJ_T0090977.1 MGP_CASTEiJ_G0033248.1 mouse_genomes_project 8 125268670 125321486 - MGP_CASTEiJ_P0090977 Cbfa2t3 protein_coding protein_coding MGP_CASTEiJ_T0090978.1 MGP_CASTEiJ_G0033248.1 mouse_genomes_project 8 125269145 125321589 - MGP_CASTEiJ_P0090978 Cbfa2t3 protein_coding protein_coding MGP_CASTEiJ_T0090979.1 MGP_CASTEiJ_G0033248.1 mouse_genomes_project 8 125280944 125322108 - MGP_CASTEiJ_P0090979 Cbfa2t3 protein_coding protein_coding MGP_CASTEiJ_T0090980.1 MGP_CASTEiJ_G0033248.1 mouse_genomes_project 8 125280948 125288360 - Cbfa2t3 protein_coding processed_transcript MGP_CASTEiJ_T0090981.1 MGP_CASTEiJ_G0033248.1 mouse_genomes_project 8 125284921 125321525 - Cbfa2t3 protein_coding processed_transcript MGP_CASTEiJ_T0090982.1 MGP_CASTEiJ_G0033248.1 mouse_genomes_project 8 125293485 125345140 - Cbfa2t3 protein_coding retained_intron MGP_CASTEiJ_T0090441.1 MGP_CASTEiJ_G0033086.1 mouse_genomes_project 8 107278270 107280532 - MGP_CASTEiJ_P0090441 Ddx28 protein_coding protein_coding MGP_CASTEiJ_T0090911.1 MGP_CASTEiJ_G0033231.1 mouse_genomes_project 8 124541719 124592707 + MGP_CASTEiJ_P0090911 Banp protein_coding protein_coding MGP_CASTEiJ_T0090912.1 MGP_CASTEiJ_G0033231.1 mouse_genomes_project 8 124542461 124623775 + MGP_CASTEiJ_P0090912 Banp protein_coding protein_coding MGP_CASTEiJ_T0090913.1 MGP_CASTEiJ_G0033231.1 mouse_genomes_project 8 124542513 124626856 + MGP_CASTEiJ_P0090913 Banp protein_coding protein_coding MGP_CASTEiJ_T0090914.1 MGP_CASTEiJ_G0033231.1 mouse_genomes_project 8 124542544 124592705 + MGP_CASTEiJ_P0090914 Banp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090915.1 MGP_CASTEiJ_G0033231.1 mouse_genomes_project 8 124542549 124623532 + MGP_CASTEiJ_P0090915 Banp protein_coding protein_coding MGP_CASTEiJ_T0090916.1 MGP_CASTEiJ_G0033231.1 mouse_genomes_project 8 124542554 124587087 + MGP_CASTEiJ_P0090916 Banp protein_coding protein_coding MGP_CASTEiJ_T0090917.1 MGP_CASTEiJ_G0033231.1 mouse_genomes_project 8 124542565 124587078 + MGP_CASTEiJ_P0090917 Banp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090918.1 MGP_CASTEiJ_G0033231.1 mouse_genomes_project 8 124542574 124587104 + MGP_CASTEiJ_P0090918 Banp protein_coding protein_coding MGP_CASTEiJ_T0090919.1 MGP_CASTEiJ_G0033231.1 mouse_genomes_project 8 124568060 124570111 + Banp protein_coding retained_intron MGP_CASTEiJ_T0090920.1 MGP_CASTEiJ_G0033231.1 mouse_genomes_project 8 124568108 124623230 + MGP_CASTEiJ_P0090920 Banp protein_coding protein_coding MGP_CASTEiJ_T0090921.1 MGP_CASTEiJ_G0033231.1 mouse_genomes_project 8 124571953 124585517 + Banp protein_coding retained_intron MGP_CASTEiJ_T0090922.1 MGP_CASTEiJ_G0033231.1 mouse_genomes_project 8 124586975 124592762 + Banp protein_coding retained_intron MGP_CASTEiJ_T0090923.1 MGP_CASTEiJ_G0033231.1 mouse_genomes_project 8 124587121 124623552 + MGP_CASTEiJ_P0090923 Banp protein_coding protein_coding MGP_CASTEiJ_T0090924.1 MGP_CASTEiJ_G0033231.1 mouse_genomes_project 8 124592612 124623202 + MGP_CASTEiJ_P0090924 Banp protein_coding protein_coding MGP_CASTEiJ_T0090925.1 MGP_CASTEiJ_G0033231.1 mouse_genomes_project 8 124596164 124616133 + Banp protein_coding processed_transcript MGP_CASTEiJ_T0090926.1 MGP_CASTEiJ_G0033231.1 mouse_genomes_project 8 124596342 124602779 + Banp protein_coding retained_intron MGP_CASTEiJ_T0010672.1 MGP_CASTEiJ_G0008860.1 mouse_genomes_project 8 83987342 83987461 - Mir1199 miRNA miRNA MGP_CASTEiJ_T0010700.1 MGP_CASTEiJ_G0008888.1 mouse_genomes_project 8 110418180 110418259 + Mir3108 miRNA miRNA MGP_CASTEiJ_T0100091.1 MGP_CASTEiJ_G0037004.1 mouse_genomes_project 8 113619717 113619821 + Gm23853 snRNA snRNA MGP_CASTEiJ_T0008968.1 MGP_CASTEiJ_G0007220.1 mouse_genomes_project 8 124878931 124882023 + Gm22 lincRNA lincRNA MGP_CASTEiJ_T0008969.1 MGP_CASTEiJ_G0007220.1 mouse_genomes_project 8 124878931 124882027 + Gm22 lincRNA lincRNA MGP_CASTEiJ_T0010667.1 MGP_CASTEiJ_G0008855.1 mouse_genomes_project 8 73197822 73197932 - Gm23255 miRNA miRNA MGP_CASTEiJ_T0090785.1 MGP_CASTEiJ_G0033204.1 mouse_genomes_project 8 122141305 122158903 - MGP_CASTEiJ_P0090785 Tldc1 protein_coding protein_coding MGP_CASTEiJ_T0008886.1 MGP_CASTEiJ_G0007164.1 mouse_genomes_project 8 81550830 81552028 - 4930579O11Rik lincRNA lincRNA MGP_CASTEiJ_T0008887.1 MGP_CASTEiJ_G0007164.1 mouse_genomes_project 8 81550858 81552074 - 4930579O11Rik lincRNA lincRNA MGP_CASTEiJ_T0005213.1 MGP_CASTEiJ_G0004427.1 mouse_genomes_project 8 43524335 43529512 - Gm2366 antisense antisense MGP_CASTEiJ_T0090087.1 MGP_CASTEiJ_G0032955.1 mouse_genomes_project 8 93325454 93326455 + MGP_CASTEiJ_P0090087 Capns2 protein_coding protein_coding MGP_CASTEiJ_T0089672.1 MGP_CASTEiJ_G0032834.1 mouse_genomes_project 8 80411635 80481269 + MGP_CASTEiJ_P0089672 protein_coding protein_coding MGP_CASTEiJ_T0089550.1 MGP_CASTEiJ_G0032783.1 mouse_genomes_project 8 71638357 71686275 + MGP_CASTEiJ_P0089550 Olfr374 protein_coding protein_coding MGP_CASTEiJ_T0090027.1 MGP_CASTEiJ_G0032935.1 mouse_genomes_project 8 88392023 88454011 + MGP_CASTEiJ_P0090027 Adcy7 protein_coding protein_coding MGP_CASTEiJ_T0090028.1 MGP_CASTEiJ_G0032935.1 mouse_genomes_project 8 88405205 88454011 + MGP_CASTEiJ_P0090028 Adcy7 protein_coding protein_coding MGP_CASTEiJ_T0090029.1 MGP_CASTEiJ_G0032935.1 mouse_genomes_project 8 88412633 88454011 + MGP_CASTEiJ_P0090029 Adcy7 protein_coding protein_coding MGP_CASTEiJ_T0090030.1 MGP_CASTEiJ_G0032935.1 mouse_genomes_project 8 88417749 88454011 + MGP_CASTEiJ_P0090030 Adcy7 protein_coding protein_coding MGP_CASTEiJ_T0011396.1 MGP_CASTEiJ_G0009584.1 mouse_genomes_project 8 112093400 112093691 + Gm22701 misc_RNA misc_RNA MGP_CASTEiJ_T0089401.1 MGP_CASTEiJ_G0032743.1 mouse_genomes_project 8 70318691 70323252 - MGP_CASTEiJ_P0089401 Arrdc2 protein_coding protein_coding MGP_CASTEiJ_T0100101.1 MGP_CASTEiJ_G0037014.1 mouse_genomes_project 8 131604582 131604689 + Gm26002 snRNA snRNA MGP_CASTEiJ_T0088246.1 MGP_CASTEiJ_G0032380.1 mouse_genomes_project 8 9731427 9762526 + MGP_CASTEiJ_P0088246 Spaca7 protein_coding protein_coding MGP_CASTEiJ_T0098657.1 MGP_CASTEiJ_G0035588.1 mouse_genomes_project 8 12766334 12766427 + Gm24222 rRNA rRNA MGP_CASTEiJ_T0090139.1 MGP_CASTEiJ_G0032970.1 mouse_genomes_project 8 94545106 94584900 - MGP_CASTEiJ_P0090139 Bbs2 protein_coding protein_coding MGP_CASTEiJ_T0090140.1 MGP_CASTEiJ_G0032970.1 mouse_genomes_project 8 94545296 94549138 - Bbs2 protein_coding processed_transcript MGP_CASTEiJ_T0090141.1 MGP_CASTEiJ_G0032970.1 mouse_genomes_project 8 94555962 94560139 - Bbs2 protein_coding processed_transcript MGP_CASTEiJ_T0088471.1 MGP_CASTEiJ_G0032464.1 mouse_genomes_project 8 19671416 19708299 + MGP_CASTEiJ_P0088471 Thsd1 protein_coding protein_coding MGP_CASTEiJ_T0088472.1 MGP_CASTEiJ_G0032464.1 mouse_genomes_project 8 19671444 19707350 + MGP_CASTEiJ_P0088472 Thsd1 protein_coding protein_coding MGP_CASTEiJ_T0088473.1 MGP_CASTEiJ_G0032464.1 mouse_genomes_project 8 19671460 19707348 + Thsd1 protein_coding processed_transcript MGP_CASTEiJ_T0098663.1 MGP_CASTEiJ_G0035594.1 mouse_genomes_project 8 63393177 63393298 + Gm22586 rRNA rRNA MGP_CASTEiJ_T0008852.1 MGP_CASTEiJ_G0007135.1 mouse_genomes_project 8 29878188 29886262 + Gm26578 lincRNA lincRNA MGP_CASTEiJ_T0090609.1 MGP_CASTEiJ_G0033143.1 mouse_genomes_project 8 112607593 112632508 - MGP_CASTEiJ_P0090609 Ddx19a protein_coding protein_coding MGP_CASTEiJ_T0090610.1 MGP_CASTEiJ_G0033143.1 mouse_genomes_project 8 112611547 112632464 - MGP_CASTEiJ_P0090610 Ddx19a protein_coding unknown_likely_coding MGP_CASTEiJ_T0090611.1 MGP_CASTEiJ_G0033143.1 mouse_genomes_project 8 112613821 112616106 - Ddx19a protein_coding retained_intron MGP_CASTEiJ_T0090612.1 MGP_CASTEiJ_G0033143.1 mouse_genomes_project 8 112615945 112632478 - Ddx19a protein_coding retained_intron MGP_CASTEiJ_T0089576.1 MGP_CASTEiJ_G0032798.1 mouse_genomes_project 8 72070246 72083816 - MGP_CASTEiJ_P0089576 Slc35e1 protein_coding protein_coding MGP_CASTEiJ_T0089577.1 MGP_CASTEiJ_G0032798.1 mouse_genomes_project 8 72074684 72083419 - MGP_CASTEiJ_P0089577 Slc35e1 protein_coding protein_coding MGP_CASTEiJ_T0008851.1 MGP_CASTEiJ_G0007134.1 mouse_genomes_project 8 28363638 28376258 + lincRNA lincRNA MGP_CASTEiJ_T0089959.1 MGP_CASTEiJ_G0032913.1 mouse_genomes_project 8 85277406 85278345 + MGP_CASTEiJ_P0089959 Olfr371 protein_coding protein_coding MGP_CASTEiJ_T0090895.1 MGP_CASTEiJ_G0033228.1 mouse_genomes_project 8 124393288 124422563 - MGP_CASTEiJ_P0090895 Klhdc4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090896.1 MGP_CASTEiJ_G0033228.1 mouse_genomes_project 8 124393386 124422493 - MGP_CASTEiJ_P0090896 Klhdc4 protein_coding protein_coding MGP_CASTEiJ_T0090897.1 MGP_CASTEiJ_G0033228.1 mouse_genomes_project 8 124393406 124422464 - Klhdc4 protein_coding retained_intron MGP_CASTEiJ_T0090898.1 MGP_CASTEiJ_G0033228.1 mouse_genomes_project 8 124393417 124394502 - Klhdc4 protein_coding retained_intron MGP_CASTEiJ_T0090899.1 MGP_CASTEiJ_G0033228.1 mouse_genomes_project 8 124393620 124422404 - MGP_CASTEiJ_P0090899 Klhdc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090900.1 MGP_CASTEiJ_G0033228.1 mouse_genomes_project 8 124393620 124422404 - MGP_CASTEiJ_P0090900 Klhdc4 protein_coding protein_coding MGP_CASTEiJ_T0090901.1 MGP_CASTEiJ_G0033228.1 mouse_genomes_project 8 124393620 124422404 - MGP_CASTEiJ_P0090901 Klhdc4 protein_coding protein_coding MGP_CASTEiJ_T0090902.1 MGP_CASTEiJ_G0033228.1 mouse_genomes_project 8 124395244 124404754 - Klhdc4 protein_coding processed_transcript MGP_CASTEiJ_T0090903.1 MGP_CASTEiJ_G0033228.1 mouse_genomes_project 8 124396544 124398673 - Klhdc4 protein_coding retained_intron MGP_CASTEiJ_T0090904.1 MGP_CASTEiJ_G0033228.1 mouse_genomes_project 8 124419561 124422433 - Klhdc4 protein_coding retained_intron MGP_CASTEiJ_T0090905.1 MGP_CASTEiJ_G0033228.1 mouse_genomes_project 8 124419855 124422428 - MGP_CASTEiJ_P0090905 Klhdc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0017700.1 MGP_CASTEiJ_G0015024.1 mouse_genomes_project 8 22588150 22592839 + Gm16933 processed_transcript processed_transcript MGP_CASTEiJ_T0090013.1 MGP_CASTEiJ_G0032932.1 mouse_genomes_project 8 88218519 88235734 + MGP_CASTEiJ_P0090013 Cnep1r1 protein_coding protein_coding MGP_CASTEiJ_T0090014.1 MGP_CASTEiJ_G0032932.1 mouse_genomes_project 8 88218528 88231273 + Cnep1r1 protein_coding processed_transcript MGP_CASTEiJ_T0090015.1 MGP_CASTEiJ_G0032932.1 mouse_genomes_project 8 88218537 88235738 + MGP_CASTEiJ_P0090015 Cnep1r1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090016.1 MGP_CASTEiJ_G0032932.1 mouse_genomes_project 8 88218550 88235109 + Cnep1r1 protein_coding retained_intron MGP_CASTEiJ_T0090017.1 MGP_CASTEiJ_G0032932.1 mouse_genomes_project 8 88218550 88232105 + MGP_CASTEiJ_P0090017 Cnep1r1 protein_coding protein_coding MGP_CASTEiJ_T0090018.1 MGP_CASTEiJ_G0032932.1 mouse_genomes_project 8 88218557 88231489 + MGP_CASTEiJ_P0090018 Cnep1r1 protein_coding protein_coding MGP_CASTEiJ_T0090969.1 MGP_CASTEiJ_G0033242.1 mouse_genomes_project 8 125201873 125206595 + MGP_CASTEiJ_P0090969 Cdt1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090970.1 MGP_CASTEiJ_G0033242.1 mouse_genomes_project 8 125201873 125206947 + MGP_CASTEiJ_P0090970 Cdt1 protein_coding protein_coding MGP_CASTEiJ_T0088625.1 MGP_CASTEiJ_G0032508.1 mouse_genomes_project 8 23569967 23601516 - MGP_CASTEiJ_P0088625 Hgsnat protein_coding protein_coding MGP_CASTEiJ_T0090297.1 MGP_CASTEiJ_G0033026.1 mouse_genomes_project 8 105682139 105694708 + MGP_CASTEiJ_P0090297 Car7 protein_coding protein_coding MGP_CASTEiJ_T0090298.1 MGP_CASTEiJ_G0033026.1 mouse_genomes_project 8 105692239 105693424 + Car7 protein_coding retained_intron MGP_CASTEiJ_T0089593.1 MGP_CASTEiJ_G0032805.1 mouse_genomes_project 8 72408988 72911551 - MGP_CASTEiJ_P0089593 Large protein_coding protein_coding MGP_CASTEiJ_T0089594.1 MGP_CASTEiJ_G0032805.1 mouse_genomes_project 8 72408988 72910567 - MGP_CASTEiJ_P0089594 Large protein_coding protein_coding MGP_CASTEiJ_T0089595.1 MGP_CASTEiJ_G0032805.1 mouse_genomes_project 8 72607066 72659637 - Large protein_coding retained_intron MGP_CASTEiJ_T0008855.1 MGP_CASTEiJ_G0007137.1 mouse_genomes_project 8 31691721 31692994 - 1700104B16Rik lincRNA lincRNA MGP_CASTEiJ_T0008856.1 MGP_CASTEiJ_G0007137.1 mouse_genomes_project 8 31691721 31692999 - 1700104B16Rik lincRNA lincRNA MGP_CASTEiJ_T0005261.1 MGP_CASTEiJ_G0004469.1 mouse_genomes_project 8 125344089 125346398 + Gm10612 antisense antisense MGP_CASTEiJ_T0090353.1 MGP_CASTEiJ_G0033048.1 mouse_genomes_project 8 106498030 106504147 - MGP_CASTEiJ_P0090353 Exoc3l protein_coding unknown_likely_coding MGP_CASTEiJ_T0011392.1 MGP_CASTEiJ_G0009580.1 mouse_genomes_project 8 91476197 91476462 - Gm23408 misc_RNA misc_RNA MGP_CASTEiJ_T0089617.1 MGP_CASTEiJ_G0032814.1 mouse_genomes_project 8 76504802 76513692 + MGP_CASTEiJ_P0089617 Nr3c2 protein_coding protein_coding MGP_CASTEiJ_T0089618.1 MGP_CASTEiJ_G0032814.1 mouse_genomes_project 8 76505127 76873348 + MGP_CASTEiJ_P0089618 Nr3c2 protein_coding protein_coding MGP_CASTEiJ_T0089619.1 MGP_CASTEiJ_G0032814.1 mouse_genomes_project 8 76507635 76873343 + MGP_CASTEiJ_P0089619 Nr3c2 protein_coding protein_coding MGP_CASTEiJ_T0089620.1 MGP_CASTEiJ_G0032814.1 mouse_genomes_project 8 76507635 76871347 + MGP_CASTEiJ_P0089620 Nr3c2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089621.1 MGP_CASTEiJ_G0032814.1 mouse_genomes_project 8 76507694 76513935 + MGP_CASTEiJ_P0089621 Nr3c2 protein_coding protein_coding MGP_CASTEiJ_T0089622.1 MGP_CASTEiJ_G0032814.1 mouse_genomes_project 8 76507823 76872013 + MGP_CASTEiJ_P0089622 Nr3c2 protein_coding protein_coding MGP_CASTEiJ_T0089623.1 MGP_CASTEiJ_G0032814.1 mouse_genomes_project 8 76513550 76870880 + MGP_CASTEiJ_P0089623 Nr3c2 protein_coding protein_coding MGP_CASTEiJ_T0089624.1 MGP_CASTEiJ_G0032814.1 mouse_genomes_project 8 76749963 76807772 + Nr3c2 protein_coding processed_transcript MGP_CASTEiJ_T0101294.1 MGP_CASTEiJ_G0038207.1 mouse_genomes_project 8 16357941 16358044 + Gm22551 snoRNA snoRNA MGP_CASTEiJ_T0088290.1 MGP_CASTEiJ_G0032384.1 mouse_genomes_project 8 10210311 10219951 + MGP_CASTEiJ_P0088290 F7 protein_coding protein_coding MGP_CASTEiJ_T0090679.1 MGP_CASTEiJ_G0033164.1 mouse_genomes_project 8 113744031 113760986 - MGP_CASTEiJ_P0090679 Kars protein_coding unknown_likely_coding MGP_CASTEiJ_T0090680.1 MGP_CASTEiJ_G0033164.1 mouse_genomes_project 8 113744039 113761601 - MGP_CASTEiJ_P0090680 Kars protein_coding protein_coding MGP_CASTEiJ_T0088826.1 MGP_CASTEiJ_G0032577.1 mouse_genomes_project 8 39599508 39697195 + MGP_CASTEiJ_P0088826 Pcm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088827.1 MGP_CASTEiJ_G0032577.1 mouse_genomes_project 8 39599569 39699211 + MGP_CASTEiJ_P0088827 Pcm1 protein_coding protein_coding MGP_CASTEiJ_T0088833.1 MGP_CASTEiJ_G0032579.1 mouse_genomes_project 8 39768432 39788806 - MGP_CASTEiJ_P0088833 Frg1 protein_coding protein_coding MGP_CASTEiJ_T0005244.1 MGP_CASTEiJ_G0004454.1 mouse_genomes_project 8 110399547 110403252 - Gm20686 antisense antisense MGP_CASTEiJ_T0015388.1 MGP_CASTEiJ_G0013551.1 mouse_genomes_project 8 79893031 79894091 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088848.1 MGP_CASTEiJ_G0032587.1 mouse_genomes_project 8 43788686 43815153 - MGP_CASTEiJ_P0088848 protein_coding protein_coding MGP_CASTEiJ_T0008920.1 MGP_CASTEiJ_G0007188.1 mouse_genomes_project 8 92708239 92732243 - Crnde lincRNA lincRNA MGP_CASTEiJ_T0008921.1 MGP_CASTEiJ_G0007188.1 mouse_genomes_project 8 92708239 92741473 - Crnde lincRNA lincRNA MGP_CASTEiJ_T0008922.1 MGP_CASTEiJ_G0007188.1 mouse_genomes_project 8 92708239 92741184 - Crnde lincRNA lincRNA MGP_CASTEiJ_T0008923.1 MGP_CASTEiJ_G0007188.1 mouse_genomes_project 8 92708451 92741244 - Crnde lincRNA lincRNA MGP_CASTEiJ_T0008924.1 MGP_CASTEiJ_G0007188.1 mouse_genomes_project 8 92721799 92741117 - Crnde lincRNA lincRNA MGP_CASTEiJ_T0008926.1 MGP_CASTEiJ_G0007188.1 mouse_genomes_project 8 92730285 92732243 - Crnde lincRNA lincRNA MGP_CASTEiJ_T0008927.1 MGP_CASTEiJ_G0007188.1 mouse_genomes_project 8 92732304 92741222 - Crnde lincRNA lincRNA MGP_CASTEiJ_T0090637.1 MGP_CASTEiJ_G0033150.1 mouse_genomes_project 8 112997053 113026687 - MGP_CASTEiJ_P0090637 Mlkl protein_coding protein_coding MGP_CASTEiJ_T0090638.1 MGP_CASTEiJ_G0033150.1 mouse_genomes_project 8 112997056 113026687 - MGP_CASTEiJ_P0090638 Mlkl protein_coding protein_coding MGP_CASTEiJ_T0090639.1 MGP_CASTEiJ_G0033150.1 mouse_genomes_project 8 112997058 113002834 - Mlkl protein_coding processed_transcript MGP_CASTEiJ_T0090640.1 MGP_CASTEiJ_G0033150.1 mouse_genomes_project 8 113020330 113026303 - MGP_CASTEiJ_P0090640 Mlkl protein_coding protein_coding MGP_CASTEiJ_T0090729.1 MGP_CASTEiJ_G0033182.1 mouse_genomes_project 8 119135778 119230336 - MGP_CASTEiJ_P0090729 Pkd1l2 protein_coding protein_coding MGP_CASTEiJ_T0090730.1 MGP_CASTEiJ_G0033182.1 mouse_genomes_project 8 119135778 119230336 - MGP_CASTEiJ_P0090730 Pkd1l2 protein_coding protein_coding MGP_CASTEiJ_T0090731.1 MGP_CASTEiJ_G0033182.1 mouse_genomes_project 8 119144234 119164976 - Pkd1l2 protein_coding retained_intron MGP_CASTEiJ_T0090732.1 MGP_CASTEiJ_G0033182.1 mouse_genomes_project 8 119164430 119169596 - Pkd1l2 protein_coding retained_intron MGP_CASTEiJ_T0090833.1 MGP_CASTEiJ_G0033215.1 mouse_genomes_project 8 123080791 123146089 - MGP_CASTEiJ_P0090833 Gm27021 protein_coding protein_coding MGP_CASTEiJ_T0090989.1 MGP_CASTEiJ_G0033252.1 mouse_genomes_project 8 125724889 125743805 + MGP_CASTEiJ_P0090989 Spg7 protein_coding protein_coding MGP_CASTEiJ_T0090990.1 MGP_CASTEiJ_G0033252.1 mouse_genomes_project 8 125727168 125761491 + MGP_CASTEiJ_P0090990 Spg7 protein_coding protein_coding MGP_CASTEiJ_T0090991.1 MGP_CASTEiJ_G0033252.1 mouse_genomes_project 8 125727465 125761484 + MGP_CASTEiJ_P0090991 Spg7 protein_coding protein_coding MGP_CASTEiJ_T0090992.1 MGP_CASTEiJ_G0033252.1 mouse_genomes_project 8 125727497 125761482 + Spg7 protein_coding retained_intron MGP_CASTEiJ_T0090993.1 MGP_CASTEiJ_G0033252.1 mouse_genomes_project 8 125727516 125761289 + MGP_CASTEiJ_P0090993 Spg7 protein_coding protein_coding MGP_CASTEiJ_T0090994.1 MGP_CASTEiJ_G0033252.1 mouse_genomes_project 8 125737562 125752778 + MGP_CASTEiJ_P0090994 Spg7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090995.1 MGP_CASTEiJ_G0033252.1 mouse_genomes_project 8 125744226 125752804 + Spg7 protein_coding retained_intron MGP_CASTEiJ_T0090996.1 MGP_CASTEiJ_G0033252.1 mouse_genomes_project 8 125744598 125761484 + MGP_CASTEiJ_P0090996 Spg7 protein_coding protein_coding MGP_CASTEiJ_T0090997.1 MGP_CASTEiJ_G0033252.1 mouse_genomes_project 8 125751028 125757493 + Spg7 protein_coding retained_intron MGP_CASTEiJ_T0090998.1 MGP_CASTEiJ_G0033252.1 mouse_genomes_project 8 125751198 125755555 + Spg7 protein_coding processed_transcript MGP_CASTEiJ_T0090999.1 MGP_CASTEiJ_G0033252.1 mouse_genomes_project 8 125755514 125761484 + MGP_CASTEiJ_P0090999 Spg7 protein_coding protein_coding MGP_CASTEiJ_T0088803.1 MGP_CASTEiJ_G0032573.1 mouse_genomes_project 8 39209807 39268371 + MGP_CASTEiJ_P0088803 Slc7a2 protein_coding protein_coding MGP_CASTEiJ_T0088804.1 MGP_CASTEiJ_G0032573.1 mouse_genomes_project 8 39209823 39272331 + MGP_CASTEiJ_P0088804 Slc7a2 protein_coding protein_coding MGP_CASTEiJ_T0088805.1 MGP_CASTEiJ_G0032573.1 mouse_genomes_project 8 39209989 39247659 + MGP_CASTEiJ_P0088805 Slc7a2 protein_coding protein_coding MGP_CASTEiJ_T0088806.1 MGP_CASTEiJ_G0032573.1 mouse_genomes_project 8 39221768 39272403 + MGP_CASTEiJ_P0088806 Slc7a2 protein_coding protein_coding MGP_CASTEiJ_T0088807.1 MGP_CASTEiJ_G0032573.1 mouse_genomes_project 8 39247114 39268021 + MGP_CASTEiJ_P0088807 Slc7a2 protein_coding protein_coding MGP_CASTEiJ_T0089150.1 MGP_CASTEiJ_G0032672.1 mouse_genomes_project 8 66987647 67284042 - MGP_CASTEiJ_P0089150 Psd3 protein_coding protein_coding MGP_CASTEiJ_T0089151.1 MGP_CASTEiJ_G0032672.1 mouse_genomes_project 8 66987647 67284042 - MGP_CASTEiJ_P0089151 Psd3 protein_coding protein_coding MGP_CASTEiJ_T0089152.1 MGP_CASTEiJ_G0032672.1 mouse_genomes_project 8 66987654 67111497 - MGP_CASTEiJ_P0089152 Psd3 protein_coding protein_coding MGP_CASTEiJ_T0089153.1 MGP_CASTEiJ_G0032672.1 mouse_genomes_project 8 66994611 67284042 - MGP_CASTEiJ_P0089153 Psd3 protein_coding protein_coding MGP_CASTEiJ_T0089154.1 MGP_CASTEiJ_G0032672.1 mouse_genomes_project 8 66995445 67214596 - MGP_CASTEiJ_P0089154 Psd3 protein_coding protein_coding MGP_CASTEiJ_T0089155.1 MGP_CASTEiJ_G0032672.1 mouse_genomes_project 8 67011600 67111435 - MGP_CASTEiJ_P0089155 Psd3 protein_coding protein_coding MGP_CASTEiJ_T0089156.1 MGP_CASTEiJ_G0032672.1 mouse_genomes_project 8 67090291 67380132 - Psd3 protein_coding retained_intron MGP_CASTEiJ_T0089157.1 MGP_CASTEiJ_G0032672.1 mouse_genomes_project 8 67174277 67207794 - Psd3 protein_coding processed_transcript MGP_CASTEiJ_T0089158.1 MGP_CASTEiJ_G0032672.1 mouse_genomes_project 8 67207325 67261369 - Psd3 protein_coding retained_intron MGP_CASTEiJ_T0100057.1 MGP_CASTEiJ_G0036970.1 mouse_genomes_project 8 25206930 25207037 - Gm24410 snRNA snRNA MGP_CASTEiJ_T0089744.1 MGP_CASTEiJ_G0032857.1 mouse_genomes_project 8 83872662 83914104 + MGP_CASTEiJ_P0089744 Adgrl1 protein_coding protein_coding MGP_CASTEiJ_T0089745.1 MGP_CASTEiJ_G0032857.1 mouse_genomes_project 8 83872825 83912163 + MGP_CASTEiJ_P0089745 Adgrl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089746.1 MGP_CASTEiJ_G0032857.1 mouse_genomes_project 8 83872968 83912163 + MGP_CASTEiJ_P0089746 Adgrl1 protein_coding protein_coding MGP_CASTEiJ_T0089747.1 MGP_CASTEiJ_G0032857.1 mouse_genomes_project 8 83872987 83912138 + MGP_CASTEiJ_P0089747 Adgrl1 protein_coding protein_coding MGP_CASTEiJ_T0089748.1 MGP_CASTEiJ_G0032857.1 mouse_genomes_project 8 83872987 83912138 + MGP_CASTEiJ_P0089748 Adgrl1 protein_coding protein_coding MGP_CASTEiJ_T0089749.1 MGP_CASTEiJ_G0032857.1 mouse_genomes_project 8 83895253 83902239 + Adgrl1 protein_coding processed_transcript MGP_CASTEiJ_T0089751.1 MGP_CASTEiJ_G0032857.1 mouse_genomes_project 8 83906758 83909646 + Adgrl1 protein_coding retained_intron MGP_CASTEiJ_T0089752.1 MGP_CASTEiJ_G0032857.1 mouse_genomes_project 8 83908304 83909979 + Adgrl1 protein_coding retained_intron MGP_CASTEiJ_T0089753.1 MGP_CASTEiJ_G0032857.1 mouse_genomes_project 8 83909805 83911016 + MGP_CASTEiJ_P0089753 Adgrl1 protein_coding protein_coding MGP_CASTEiJ_T0088836.1 MGP_CASTEiJ_G0032582.1 mouse_genomes_project 8 41708312 41722951 - MGP_CASTEiJ_P0088836 Zfp42 protein_coding protein_coding MGP_CASTEiJ_T0008846.1 MGP_CASTEiJ_G0007130.1 mouse_genomes_project 8 24521738 24534977 - lincRNA lincRNA MGP_CASTEiJ_T0088668.1 MGP_CASTEiJ_G0032527.1 mouse_genomes_project 8 28923660 28931293 + MGP_CASTEiJ_P0088668 Dusp26 protein_coding protein_coding MGP_CASTEiJ_T0088669.1 MGP_CASTEiJ_G0032527.1 mouse_genomes_project 8 28923825 28931292 + MGP_CASTEiJ_P0088669 Dusp26 protein_coding protein_coding MGP_CASTEiJ_T0088670.1 MGP_CASTEiJ_G0032527.1 mouse_genomes_project 8 28923991 28926477 + Dusp26 protein_coding retained_intron MGP_CASTEiJ_T0088671.1 MGP_CASTEiJ_G0032527.1 mouse_genomes_project 8 28925894 28931292 + MGP_CASTEiJ_P0088671 Dusp26 protein_coding protein_coding MGP_CASTEiJ_T0088672.1 MGP_CASTEiJ_G0032527.1 mouse_genomes_project 8 28928260 28930836 + Dusp26 protein_coding processed_transcript MGP_CASTEiJ_T0005205.1 MGP_CASTEiJ_G0004421.1 mouse_genomes_project 8 20639568 20650544 - Gm15816 antisense antisense MGP_CASTEiJ_T0010651.1 MGP_CASTEiJ_G0008839.1 mouse_genomes_project 8 36535009 36535079 - Mir383 miRNA miRNA MGP_CASTEiJ_T0090143.1 MGP_CASTEiJ_G0032972.1 mouse_genomes_project 8 94645914 94647465 + MGP_CASTEiJ_P0090143 Mt3 protein_coding protein_coding MGP_CASTEiJ_T0088203.1 MGP_CASTEiJ_G0032362.1 mouse_genomes_project 8 6912899 6919514 - MGP_CASTEiJ_P0088203 Lig4 protein_coding protein_coding MGP_CASTEiJ_T0088204.1 MGP_CASTEiJ_G0032362.1 mouse_genomes_project 8 6914223 6920877 - MGP_CASTEiJ_P0088204 Lig4 protein_coding protein_coding MGP_CASTEiJ_T0089125.1 MGP_CASTEiJ_G0032662.1 mouse_genomes_project 8 64334065 64336570 + MGP_CASTEiJ_P0089125 Gm10663 protein_coding protein_coding MGP_CASTEiJ_T0090674.1 MGP_CASTEiJ_G0033161.1 mouse_genomes_project 8 113659782 113682163 - MGP_CASTEiJ_P0090674 Tmem231 protein_coding protein_coding MGP_CASTEiJ_T0088414.1 MGP_CASTEiJ_G0032422.1 mouse_genomes_project 8 16357681 16377397 - Xkr5 protein_coding processed_transcript MGP_CASTEiJ_T0088415.1 MGP_CASTEiJ_G0032422.1 mouse_genomes_project 8 16357684 16377442 - MGP_CASTEiJ_P0088415 Xkr5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088416.1 MGP_CASTEiJ_G0032422.1 mouse_genomes_project 8 16358040 16377463 - MGP_CASTEiJ_P0088416 Xkr5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088417.1 MGP_CASTEiJ_G0032422.1 mouse_genomes_project 8 16359476 16377459 - MGP_CASTEiJ_P0088417 Xkr5 protein_coding protein_coding MGP_CASTEiJ_T0090214.1 MGP_CASTEiJ_G0032998.1 mouse_genomes_project 8 95777900 95847969 - MGP_CASTEiJ_P0090214 Cngb1 protein_coding protein_coding MGP_CASTEiJ_T0090215.1 MGP_CASTEiJ_G0032998.1 mouse_genomes_project 8 95779835 95821905 - MGP_CASTEiJ_P0090215 Cngb1 protein_coding protein_coding MGP_CASTEiJ_T0090216.1 MGP_CASTEiJ_G0032998.1 mouse_genomes_project 8 95779841 95821925 - MGP_CASTEiJ_P0090216 Cngb1 protein_coding protein_coding MGP_CASTEiJ_T0090217.1 MGP_CASTEiJ_G0032998.1 mouse_genomes_project 8 95830740 95833853 - Cngb1 protein_coding retained_intron MGP_CASTEiJ_T0090218.1 MGP_CASTEiJ_G0032998.1 mouse_genomes_project 8 95830740 95845225 - Cngb1 protein_coding retained_intron MGP_CASTEiJ_T0090219.1 MGP_CASTEiJ_G0032998.1 mouse_genomes_project 8 95830740 95845225 - Cngb1 protein_coding retained_intron MGP_CASTEiJ_T0090220.1 MGP_CASTEiJ_G0032998.1 mouse_genomes_project 8 95830740 95847969 - MGP_CASTEiJ_P0090220 Cngb1 protein_coding protein_coding MGP_CASTEiJ_T0090221.1 MGP_CASTEiJ_G0032998.1 mouse_genomes_project 8 95830740 95835481 - MGP_CASTEiJ_P0090221 Cngb1 protein_coding protein_coding MGP_CASTEiJ_T0090222.1 MGP_CASTEiJ_G0032998.1 mouse_genomes_project 8 95830743 95847954 - Cngb1 protein_coding retained_intron MGP_CASTEiJ_T0089774.1 MGP_CASTEiJ_G0032868.1 mouse_genomes_project 8 84049692 84051739 - MGP_CASTEiJ_P0089774 protein_coding protein_coding MGP_CASTEiJ_T0089790.1 MGP_CASTEiJ_G0032877.1 mouse_genomes_project 8 84246167 84253544 - MGP_CASTEiJ_P0089790 Mri1 protein_coding protein_coding MGP_CASTEiJ_T0089791.1 MGP_CASTEiJ_G0032877.1 mouse_genomes_project 8 84247283 84252633 - MGP_CASTEiJ_P0089791 Mri1 protein_coding protein_coding MGP_CASTEiJ_T0089792.1 MGP_CASTEiJ_G0032877.1 mouse_genomes_project 8 84250146 84253467 - MGP_CASTEiJ_P0089792 Mri1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089793.1 MGP_CASTEiJ_G0032877.1 mouse_genomes_project 8 84250460 84253546 - Mri1 protein_coding processed_transcript MGP_CASTEiJ_T0089794.1 MGP_CASTEiJ_G0032877.1 mouse_genomes_project 8 84252009 84253546 - Mri1 protein_coding retained_intron MGP_CASTEiJ_T0088357.1 MGP_CASTEiJ_G0032408.1 mouse_genomes_project 8 11215290 11241727 - MGP_CASTEiJ_P0088357 Tdrp protein_coding protein_coding MGP_CASTEiJ_T0088358.1 MGP_CASTEiJ_G0032408.1 mouse_genomes_project 8 11215410 11216668 - Tdrp protein_coding processed_transcript MGP_CASTEiJ_T0088359.1 MGP_CASTEiJ_G0032408.1 mouse_genomes_project 8 11217036 11224580 - Tdrp protein_coding processed_transcript MGP_CASTEiJ_T0088360.1 MGP_CASTEiJ_G0032408.1 mouse_genomes_project 8 11217393 11241982 - MGP_CASTEiJ_P0088360 Tdrp protein_coding protein_coding MGP_CASTEiJ_T0088361.1 MGP_CASTEiJ_G0032408.1 mouse_genomes_project 8 11239501 11241693 - Tdrp protein_coding retained_intron MGP_CASTEiJ_T0010685.1 MGP_CASTEiJ_G0008873.1 mouse_genomes_project 8 86628191 86628310 + Gm44348 miRNA miRNA MGP_CASTEiJ_T0008864.1 MGP_CASTEiJ_G0007144.1 mouse_genomes_project 8 44124101 44134862 - lincRNA lincRNA MGP_CASTEiJ_T0088657.1 MGP_CASTEiJ_G0032520.1 mouse_genomes_project 8 24940387 24945510 - MGP_CASTEiJ_P0088657 Got1l1 protein_coding protein_coding MGP_CASTEiJ_T0008946.1 MGP_CASTEiJ_G0007202.1 mouse_genomes_project 8 111844860 111847075 - Gm26832 lincRNA lincRNA MGP_CASTEiJ_T0089115.1 MGP_CASTEiJ_G0032657.1 mouse_genomes_project 8 63986016 64096552 - MGP_CASTEiJ_P0089115 Klhl2 protein_coding protein_coding MGP_CASTEiJ_T0089116.1 MGP_CASTEiJ_G0032657.1 mouse_genomes_project 8 63988896 64096607 - MGP_CASTEiJ_P0089116 Klhl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0101302.1 MGP_CASTEiJ_G0038215.1 mouse_genomes_project 8 37296230 37296362 - Gm23128 snoRNA snoRNA MGP_CASTEiJ_T0002269.1 MGP_CASTEiJ_G0002187.1 mouse_genomes_project 8 123007642 123008477 - TEC TEC MGP_CASTEiJ_T0088440.1 MGP_CASTEiJ_G0032443.1 mouse_genomes_project 8 19119728 19120859 - MGP_CASTEiJ_P0088440 protein_coding protein_coding MGP_CASTEiJ_T0089222.1 MGP_CASTEiJ_G0032692.1 mouse_genomes_project 8 69228818 69238763 + MGP_CASTEiJ_P0089222 Lpar2 protein_coding protein_coding MGP_CASTEiJ_T0089223.1 MGP_CASTEiJ_G0032692.1 mouse_genomes_project 8 69228954 69238764 + MGP_CASTEiJ_P0089223 Lpar2 protein_coding protein_coding MGP_CASTEiJ_T0008901.1 MGP_CASTEiJ_G0007177.1 mouse_genomes_project 8 87521508 87522503 + 4930535O05Rik lincRNA lincRNA MGP_CASTEiJ_T0100086.1 MGP_CASTEiJ_G0036999.1 mouse_genomes_project 8 103475593 103475656 + Gm24602 snRNA snRNA MGP_CASTEiJ_T0090410.1 MGP_CASTEiJ_G0033072.1 mouse_genomes_project 8 107076084 107096185 + MGP_CASTEiJ_P0090410 Tsnaxip1 protein_coding protein_coding MGP_CASTEiJ_T0090411.1 MGP_CASTEiJ_G0033072.1 mouse_genomes_project 8 107087307 107096215 + MGP_CASTEiJ_P0090411 Tsnaxip1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0015367.1 MGP_CASTEiJ_G0013530.1 mouse_genomes_project 8 51147002 51147968 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091148.1 MGP_CASTEiJ_G0033298.1 mouse_genomes_project 8 128431512 128435054 + MGP_CASTEiJ_P0091148 Map10 protein_coding protein_coding MGP_CASTEiJ_T0088418.1 MGP_CASTEiJ_G0032423.1 mouse_genomes_project 8 16404057 16407407 - MGP_CASTEiJ_P0088418 Defb40 protein_coding protein_coding MGP_CASTEiJ_T0101327.1 MGP_CASTEiJ_G0038240.1 mouse_genomes_project 8 85104677 85104747 + Gm25506 snoRNA snoRNA MGP_CASTEiJ_T0089854.1 MGP_CASTEiJ_G0032887.1 mouse_genomes_project 8 84861954 84865922 + MGP_CASTEiJ_P0089854 Gadd45gip1 protein_coding protein_coding MGP_CASTEiJ_T0090712.1 MGP_CASTEiJ_G0033174.1 mouse_genomes_project 8 117689595 117713740 - MGP_CASTEiJ_P0090712 Maf protein_coding protein_coding MGP_CASTEiJ_T0090713.1 MGP_CASTEiJ_G0033174.1 mouse_genomes_project 8 117708113 117714436 - MGP_CASTEiJ_P0090713 Maf protein_coding protein_coding MGP_CASTEiJ_T0088888.1 MGP_CASTEiJ_G0032595.1 mouse_genomes_project 8 44552339 44578680 + MGP_CASTEiJ_P0088888 Ufsp2 protein_coding protein_coding MGP_CASTEiJ_T0088889.1 MGP_CASTEiJ_G0032595.1 mouse_genomes_project 8 44552345 44578579 + Ufsp2 protein_coding retained_intron MGP_CASTEiJ_T0088890.1 MGP_CASTEiJ_G0032595.1 mouse_genomes_project 8 44552355 44557600 + Ufsp2 protein_coding retained_intron MGP_CASTEiJ_T0088891.1 MGP_CASTEiJ_G0032595.1 mouse_genomes_project 8 44552361 44562121 + Ufsp2 protein_coding processed_transcript MGP_CASTEiJ_T0088892.1 MGP_CASTEiJ_G0032595.1 mouse_genomes_project 8 44552389 44557168 + Ufsp2 protein_coding processed_transcript MGP_CASTEiJ_T0088893.1 MGP_CASTEiJ_G0032595.1 mouse_genomes_project 8 44576849 44578582 + Ufsp2 protein_coding retained_intron MGP_CASTEiJ_T0088498.1 MGP_CASTEiJ_G0032475.1 mouse_genomes_project 8 20247980 20270801 - MGP_CASTEiJ_P0088498 Ap3m2 protein_coding protein_coding MGP_CASTEiJ_T0089960.1 MGP_CASTEiJ_G0032914.1 mouse_genomes_project 8 85295299 85337006 - MGP_CASTEiJ_P0089960 Vps35 protein_coding protein_coding MGP_CASTEiJ_T0091004.1 MGP_CASTEiJ_G0033254.1 mouse_genomes_project 8 125784943 125802695 + Cpne7 protein_coding retained_intron MGP_CASTEiJ_T0091005.1 MGP_CASTEiJ_G0033254.1 mouse_genomes_project 8 125784947 125802697 + MGP_CASTEiJ_P0091005 Cpne7 protein_coding protein_coding MGP_CASTEiJ_T0091006.1 MGP_CASTEiJ_G0033254.1 mouse_genomes_project 8 125785016 125802697 + Cpne7 protein_coding retained_intron MGP_CASTEiJ_T0091007.1 MGP_CASTEiJ_G0033254.1 mouse_genomes_project 8 125794065 125794922 + Cpne7 protein_coding processed_transcript MGP_CASTEiJ_T0091008.1 MGP_CASTEiJ_G0033254.1 mouse_genomes_project 8 125796185 125799463 + Cpne7 protein_coding retained_intron MGP_CASTEiJ_T0008918.1 MGP_CASTEiJ_G0007186.1 mouse_genomes_project 8 92257751 92263240 - Gm28515 lincRNA lincRNA MGP_CASTEiJ_T0010703.1 MGP_CASTEiJ_G0008891.1 mouse_genomes_project 8 112652978 112653059 - Mir3473d miRNA miRNA MGP_CASTEiJ_T0008873.1 MGP_CASTEiJ_G0007153.1 mouse_genomes_project 8 67421656 67443055 - lincRNA lincRNA MGP_CASTEiJ_T0008874.1 MGP_CASTEiJ_G0007153.1 mouse_genomes_project 8 67442076 67443269 - lincRNA lincRNA MGP_CASTEiJ_T0089184.1 MGP_CASTEiJ_G0032678.1 mouse_genomes_project 8 68436203 68461386 + MGP_CASTEiJ_P0089184 Atp6v1b2 protein_coding protein_coding MGP_CASTEiJ_T0089185.1 MGP_CASTEiJ_G0032678.1 mouse_genomes_project 8 68436325 68455055 + Atp6v1b2 protein_coding retained_intron MGP_CASTEiJ_T0089186.1 MGP_CASTEiJ_G0032678.1 mouse_genomes_project 8 68436344 68449952 + Atp6v1b2 protein_coding retained_intron MGP_CASTEiJ_T0089187.1 MGP_CASTEiJ_G0032678.1 mouse_genomes_project 8 68436346 68444191 + Atp6v1b2 protein_coding retained_intron MGP_CASTEiJ_T0089188.1 MGP_CASTEiJ_G0032678.1 mouse_genomes_project 8 68449915 68450766 + Atp6v1b2 protein_coding retained_intron MGP_CASTEiJ_T0089189.1 MGP_CASTEiJ_G0032678.1 mouse_genomes_project 8 68450830 68456020 + Atp6v1b2 protein_coding retained_intron MGP_CASTEiJ_T0089877.1 MGP_CASTEiJ_G0032893.1 mouse_genomes_project 8 84922652 84929747 - MGP_CASTEiJ_P0089877 Gcdh protein_coding protein_coding MGP_CASTEiJ_T0089878.1 MGP_CASTEiJ_G0032893.1 mouse_genomes_project 8 84926797 84929351 - Gcdh protein_coding retained_intron MGP_CASTEiJ_T0089879.1 MGP_CASTEiJ_G0032893.1 mouse_genomes_project 8 84926996 84928732 - Gcdh protein_coding retained_intron MGP_CASTEiJ_T0089880.1 MGP_CASTEiJ_G0032893.1 mouse_genomes_project 8 84928716 84929541 - Gcdh protein_coding retained_intron MGP_CASTEiJ_T0089881.1 MGP_CASTEiJ_G0032893.1 mouse_genomes_project 8 84929159 84929987 - MGP_CASTEiJ_P0089881 Gcdh protein_coding protein_coding MGP_CASTEiJ_T0090745.1 MGP_CASTEiJ_G0033190.1 mouse_genomes_project 8 120560821 121670357 + MGP_CASTEiJ_P0090745 Cdh13 protein_coding protein_coding MGP_CASTEiJ_T0090746.1 MGP_CASTEiJ_G0033190.1 mouse_genomes_project 8 120560843 121157091 + Cdh13 protein_coding retained_intron MGP_CASTEiJ_T0090747.1 MGP_CASTEiJ_G0033190.1 mouse_genomes_project 8 120560863 121279731 + Cdh13 protein_coding retained_intron MGP_CASTEiJ_T0090748.1 MGP_CASTEiJ_G0033190.1 mouse_genomes_project 8 120560884 121059246 + Cdh13 protein_coding retained_intron MGP_CASTEiJ_T0090749.1 MGP_CASTEiJ_G0033190.1 mouse_genomes_project 8 120560885 121530226 + Cdh13 protein_coding retained_intron MGP_CASTEiJ_T0090750.1 MGP_CASTEiJ_G0033190.1 mouse_genomes_project 8 120593251 121161583 + Cdh13 protein_coding processed_transcript MGP_CASTEiJ_T0090751.1 MGP_CASTEiJ_G0033190.1 mouse_genomes_project 8 121612309 121657455 + Cdh13 protein_coding processed_transcript MGP_CASTEiJ_T0090572.1 MGP_CASTEiJ_G0033133.1 mouse_genomes_project 8 111705397 111733961 - MGP_CASTEiJ_P0090572 Calb2 protein_coding protein_coding MGP_CASTEiJ_T0090632.1 MGP_CASTEiJ_G0033148.1 mouse_genomes_project 8 112812861 112937587 - MGP_CASTEiJ_P0090632 Glg1 protein_coding protein_coding MGP_CASTEiJ_T0090633.1 MGP_CASTEiJ_G0033148.1 mouse_genomes_project 8 112815965 112836533 - MGP_CASTEiJ_P0090633 Glg1 protein_coding protein_coding MGP_CASTEiJ_T0090634.1 MGP_CASTEiJ_G0033148.1 mouse_genomes_project 8 112816005 112937571 - MGP_CASTEiJ_P0090634 Glg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090635.1 MGP_CASTEiJ_G0033148.1 mouse_genomes_project 8 112816338 112937587 - MGP_CASTEiJ_P0090635 Glg1 protein_coding protein_coding MGP_CASTEiJ_T0088123.1 MGP_CASTEiJ_G0032338.1 mouse_genomes_project 8 702264 707850 - MGP_CASTEiJ_P0088123 Cd209a protein_coding protein_coding MGP_CASTEiJ_T0090789.1 MGP_CASTEiJ_G0033207.1 mouse_genomes_project 8 122296495 122350777 + MGP_CASTEiJ_P0090789 Usp10 protein_coding protein_coding MGP_CASTEiJ_T0090790.1 MGP_CASTEiJ_G0033207.1 mouse_genomes_project 8 122296948 122350782 + MGP_CASTEiJ_P0090790 Usp10 protein_coding protein_coding MGP_CASTEiJ_T0090791.1 MGP_CASTEiJ_G0033207.1 mouse_genomes_project 8 122296967 122343689 + Usp10 protein_coding processed_transcript MGP_CASTEiJ_T0090792.1 MGP_CASTEiJ_G0033207.1 mouse_genomes_project 8 122296991 122343004 + MGP_CASTEiJ_P0090792 Usp10 protein_coding protein_coding MGP_CASTEiJ_T0090793.1 MGP_CASTEiJ_G0033207.1 mouse_genomes_project 8 122334409 122339043 + Usp10 protein_coding processed_transcript MGP_CASTEiJ_T0090794.1 MGP_CASTEiJ_G0033207.1 mouse_genomes_project 8 122338629 122344353 + Usp10 protein_coding retained_intron MGP_CASTEiJ_T0090795.1 MGP_CASTEiJ_G0033207.1 mouse_genomes_project 8 122338740 122343473 + Usp10 protein_coding retained_intron MGP_CASTEiJ_T0090796.1 MGP_CASTEiJ_G0033207.1 mouse_genomes_project 8 122343032 122346406 + Usp10 protein_coding retained_intron MGP_CASTEiJ_T0090797.1 MGP_CASTEiJ_G0033207.1 mouse_genomes_project 8 122343713 122345900 + Usp10 protein_coding retained_intron MGP_CASTEiJ_T0090798.1 MGP_CASTEiJ_G0033207.1 mouse_genomes_project 8 122344336 122350092 + MGP_CASTEiJ_P0090798 Usp10 protein_coding protein_coding MGP_CASTEiJ_T0090799.1 MGP_CASTEiJ_G0033207.1 mouse_genomes_project 8 122349428 122350779 + Usp10 protein_coding processed_transcript MGP_CASTEiJ_T0091172.1 MGP_CASTEiJ_G0033308.1 mouse_genomes_project 8 129819907 129846803 - MGP_CASTEiJ_P0091172 Rbm34 protein_coding protein_coding MGP_CASTEiJ_T0091173.1 MGP_CASTEiJ_G0033308.1 mouse_genomes_project 8 129821757 129846802 - MGP_CASTEiJ_P0091173 Rbm34 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088379.1 MGP_CASTEiJ_G0032414.1 mouse_genomes_project 8 12237807 12336750 + MGP_CASTEiJ_P0088379 Arhgef10 protein_coding protein_coding MGP_CASTEiJ_T0088380.1 MGP_CASTEiJ_G0032414.1 mouse_genomes_project 8 12237861 12255621 + Arhgef10 protein_coding retained_intron MGP_CASTEiJ_T0088381.1 MGP_CASTEiJ_G0032414.1 mouse_genomes_project 8 12237868 12290566 + MGP_CASTEiJ_P0088381 Arhgef10 protein_coding protein_coding MGP_CASTEiJ_T0088382.1 MGP_CASTEiJ_G0032414.1 mouse_genomes_project 8 12237882 12336750 + MGP_CASTEiJ_P0088382 Arhgef10 protein_coding protein_coding MGP_CASTEiJ_T0088383.1 MGP_CASTEiJ_G0032414.1 mouse_genomes_project 8 12272541 12336747 + MGP_CASTEiJ_P0088383 Arhgef10 protein_coding protein_coding MGP_CASTEiJ_T0088384.1 MGP_CASTEiJ_G0032414.1 mouse_genomes_project 8 12322621 12323387 + Arhgef10 protein_coding processed_transcript MGP_CASTEiJ_T0088385.1 MGP_CASTEiJ_G0032414.1 mouse_genomes_project 8 12328270 12336739 + Arhgef10 protein_coding processed_transcript MGP_CASTEiJ_T0088845.1 MGP_CASTEiJ_G0032585.1 mouse_genomes_project 8 43583914 43603881 + MGP_CASTEiJ_P0088845 Mtnr1a protein_coding protein_coding MGP_CASTEiJ_T0088846.1 MGP_CASTEiJ_G0032585.1 mouse_genomes_project 8 43584151 43602881 + MGP_CASTEiJ_P0088846 Mtnr1a protein_coding protein_coding MGP_CASTEiJ_T0008884.1 MGP_CASTEiJ_G0007162.1 mouse_genomes_project 8 80742312 80751106 - lincRNA lincRNA MGP_CASTEiJ_T0101348.1 MGP_CASTEiJ_G0038261.1 mouse_genomes_project 8 132002535 132002667 + Gm22374 snoRNA snoRNA MGP_CASTEiJ_T0101334.1 MGP_CASTEiJ_G0038247.1 mouse_genomes_project 8 96310226 96310361 - Gm26265 snoRNA snoRNA MGP_CASTEiJ_T0088995.1 MGP_CASTEiJ_G0032626.1 mouse_genomes_project 8 53726674 53764847 + MGP_CASTEiJ_P0088995 Asb5 protein_coding protein_coding MGP_CASTEiJ_T0088133.1 MGP_CASTEiJ_G0032343.1 mouse_genomes_project 8 935042 936378 - protein_coding retained_intron MGP_CASTEiJ_T0088650.1 MGP_CASTEiJ_G0032517.1 mouse_genomes_project 8 24814668 24855330 + MGP_CASTEiJ_P0088650 Adgra2 protein_coding protein_coding MGP_CASTEiJ_T0088651.1 MGP_CASTEiJ_G0032517.1 mouse_genomes_project 8 24814683 24855331 + MGP_CASTEiJ_P0088651 Adgra2 protein_coding protein_coding MGP_CASTEiJ_T0088652.1 MGP_CASTEiJ_G0032517.1 mouse_genomes_project 8 24846014 24850757 + MGP_CASTEiJ_P0088652 Adgra2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088653.1 MGP_CASTEiJ_G0032517.1 mouse_genomes_project 8 24849276 24853519 + MGP_CASTEiJ_P0088653 Adgra2 protein_coding protein_coding MGP_CASTEiJ_T0100075.1 MGP_CASTEiJ_G0036988.1 mouse_genomes_project 8 77318637 77318745 + Gm23468 snRNA snRNA MGP_CASTEiJ_T0090723.1 MGP_CASTEiJ_G0033178.1 mouse_genomes_project 8 119047869 119067758 + MGP_CASTEiJ_P0090723 Cenpn protein_coding protein_coding MGP_CASTEiJ_T0089010.1 MGP_CASTEiJ_G0032630.1 mouse_genomes_project 8 54824401 54857664 - MGP_CASTEiJ_P0089010 Adam29 protein_coding protein_coding MGP_CASTEiJ_T0088740.1 MGP_CASTEiJ_G0032555.1 mouse_genomes_project 8 33877382 33931219 + MGP_CASTEiJ_P0088740 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0015343.1 MGP_CASTEiJ_G0013506.1 mouse_genomes_project 8 7819198 7819639 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090269.1 MGP_CASTEiJ_G0033015.1 mouse_genomes_project 8 103665541 103668620 - protein_coding retained_intron MGP_CASTEiJ_T0090485.1 MGP_CASTEiJ_G0033104.1 mouse_genomes_project 8 108375981 108376966 - MGP_CASTEiJ_P0090485 protein_coding protein_coding MGP_CASTEiJ_T0090573.1 MGP_CASTEiJ_G0033134.1 mouse_genomes_project 8 111786487 111792092 + MGP_CASTEiJ_P0090573 Cmtr2 protein_coding protein_coding MGP_CASTEiJ_T0090574.1 MGP_CASTEiJ_G0033134.1 mouse_genomes_project 8 111788827 111795364 + MGP_CASTEiJ_P0090574 Cmtr2 protein_coding protein_coding MGP_CASTEiJ_T0090717.1 MGP_CASTEiJ_G0033177.1 mouse_genomes_project 8 119014087 119020073 - Cmc2 protein_coding retained_intron MGP_CASTEiJ_T0090718.1 MGP_CASTEiJ_G0033177.1 mouse_genomes_project 8 119014087 119047585 - MGP_CASTEiJ_P0090718 Cmc2 protein_coding protein_coding MGP_CASTEiJ_T0090719.1 MGP_CASTEiJ_G0033177.1 mouse_genomes_project 8 119014669 119047552 - MGP_CASTEiJ_P0090719 Cmc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090720.1 MGP_CASTEiJ_G0033177.1 mouse_genomes_project 8 119014923 119047569 - MGP_CASTEiJ_P0090720 Cmc2 protein_coding protein_coding MGP_CASTEiJ_T0090721.1 MGP_CASTEiJ_G0033177.1 mouse_genomes_project 8 119015005 119047576 - Cmc2 protein_coding processed_transcript MGP_CASTEiJ_T0090722.1 MGP_CASTEiJ_G0033177.1 mouse_genomes_project 8 119015022 119047492 - MGP_CASTEiJ_P0090722 Cmc2 protein_coding protein_coding MGP_CASTEiJ_T0008865.1 MGP_CASTEiJ_G0007145.1 mouse_genomes_project 8 45348063 45356612 - lincRNA lincRNA MGP_CASTEiJ_T0100094.1 MGP_CASTEiJ_G0037007.1 mouse_genomes_project 8 117595121 117595225 - Gm23677 snRNA snRNA MGP_CASTEiJ_T0089515.1 MGP_CASTEiJ_G0032777.1 mouse_genomes_project 8 71266213 71279106 - MGP_CASTEiJ_P0089515 Fcho1 protein_coding protein_coding MGP_CASTEiJ_T0089516.1 MGP_CASTEiJ_G0032777.1 mouse_genomes_project 8 71266220 71283494 - MGP_CASTEiJ_P0089516 Fcho1 protein_coding protein_coding MGP_CASTEiJ_T0089517.1 MGP_CASTEiJ_G0032777.1 mouse_genomes_project 8 71266245 71283444 - Fcho1 protein_coding retained_intron MGP_CASTEiJ_T0089518.1 MGP_CASTEiJ_G0032777.1 mouse_genomes_project 8 71266478 71283444 - MGP_CASTEiJ_P0089518 Fcho1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089519.1 MGP_CASTEiJ_G0032777.1 mouse_genomes_project 8 71267463 71268928 - Fcho1 protein_coding retained_intron MGP_CASTEiJ_T0089520.1 MGP_CASTEiJ_G0032777.1 mouse_genomes_project 8 71267515 71270001 - Fcho1 protein_coding retained_intron MGP_CASTEiJ_T0089521.1 MGP_CASTEiJ_G0032777.1 mouse_genomes_project 8 71270363 71273355 - MGP_CASTEiJ_P0089521 Fcho1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089522.1 MGP_CASTEiJ_G0032777.1 mouse_genomes_project 8 71272174 71274423 - Fcho1 protein_coding retained_intron MGP_CASTEiJ_T0089523.1 MGP_CASTEiJ_G0032777.1 mouse_genomes_project 8 71273568 71283482 - MGP_CASTEiJ_P0089523 Fcho1 protein_coding protein_coding MGP_CASTEiJ_T0089524.1 MGP_CASTEiJ_G0032777.1 mouse_genomes_project 8 71273663 71279664 - Fcho1 protein_coding processed_transcript MGP_CASTEiJ_T0089525.1 MGP_CASTEiJ_G0032777.1 mouse_genomes_project 8 71274604 71283425 - Fcho1 protein_coding retained_intron MGP_CASTEiJ_T0089526.1 MGP_CASTEiJ_G0032777.1 mouse_genomes_project 8 71275002 71281130 - MGP_CASTEiJ_P0089526 Fcho1 protein_coding protein_coding MGP_CASTEiJ_T0091015.1 MGP_CASTEiJ_G0033259.1 mouse_genomes_project 8 125885716 125893484 + MGP_CASTEiJ_P0091015 Cdk10 protein_coding protein_coding MGP_CASTEiJ_T0091016.1 MGP_CASTEiJ_G0033259.1 mouse_genomes_project 8 125887028 125891176 + MGP_CASTEiJ_P0091016 Cdk10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088689.1 MGP_CASTEiJ_G0032538.1 mouse_genomes_project 8 31451825 31494204 + MGP_CASTEiJ_P0088689 Tex15 protein_coding protein_coding MGP_CASTEiJ_T0088690.1 MGP_CASTEiJ_G0032538.1 mouse_genomes_project 8 31452404 31511203 + MGP_CASTEiJ_P0088690 Tex15 protein_coding protein_coding MGP_CASTEiJ_T0088691.1 MGP_CASTEiJ_G0032538.1 mouse_genomes_project 8 31452404 31523165 + MGP_CASTEiJ_P0088691 Tex15 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088692.1 MGP_CASTEiJ_G0032538.1 mouse_genomes_project 8 31508188 31523165 + MGP_CASTEiJ_P0088692 Tex15 protein_coding protein_coding MGP_CASTEiJ_T0089789.1 MGP_CASTEiJ_G0032876.1 mouse_genomes_project 8 84242793 84246023 - MGP_CASTEiJ_P0089789 D8Ertd738e protein_coding protein_coding MGP_CASTEiJ_T0089337.1 MGP_CASTEiJ_G0032719.1 mouse_genomes_project 8 69907851 69934022 - MGP_CASTEiJ_P0089337 Klhl26 protein_coding protein_coding MGP_CASTEiJ_T0089338.1 MGP_CASTEiJ_G0032719.1 mouse_genomes_project 8 69907851 69934022 - MGP_CASTEiJ_P0089338 Klhl26 protein_coding protein_coding MGP_CASTEiJ_T0089882.1 MGP_CASTEiJ_G0032894.1 mouse_genomes_project 8 84943871 84947246 + MGP_CASTEiJ_P0089882 Klf1 protein_coding protein_coding MGP_CASTEiJ_T0010684.1 MGP_CASTEiJ_G0008872.1 mouse_genomes_project 8 85759992 85760109 + Mir8109 miRNA miRNA MGP_CASTEiJ_T0017705.1 MGP_CASTEiJ_G0015027.1 mouse_genomes_project 8 39582497 39585232 + Gm16348 processed_transcript processed_transcript MGP_CASTEiJ_T0017706.1 MGP_CASTEiJ_G0015027.1 mouse_genomes_project 8 39582498 39584861 + Gm16348 processed_transcript processed_transcript MGP_CASTEiJ_T0010645.1 MGP_CASTEiJ_G0008833.1 mouse_genomes_project 8 20643277 20643405 + Mir486 miRNA miRNA MGP_CASTEiJ_T0089380.1 MGP_CASTEiJ_G0032733.1 mouse_genomes_project 8 70171704 70174627 + MGP_CASTEiJ_P0089380 Jund protein_coding protein_coding MGP_CASTEiJ_T0090843.1 MGP_CASTEiJ_G0033217.1 mouse_genomes_project 8 123146265 123147793 + Cox4i1 protein_coding retained_intron MGP_CASTEiJ_T0090844.1 MGP_CASTEiJ_G0033217.1 mouse_genomes_project 8 123146300 123152178 + MGP_CASTEiJ_P0090844 Cox4i1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090845.1 MGP_CASTEiJ_G0033217.1 mouse_genomes_project 8 123146340 123152010 + MGP_CASTEiJ_P0090845 Cox4i1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090846.1 MGP_CASTEiJ_G0033217.1 mouse_genomes_project 8 123147283 123152178 + MGP_CASTEiJ_P0090846 Cox4i1 protein_coding protein_coding MGP_CASTEiJ_T0090847.1 MGP_CASTEiJ_G0033217.1 mouse_genomes_project 8 123150554 123152078 + Cox4i1 protein_coding retained_intron MGP_CASTEiJ_T0090848.1 MGP_CASTEiJ_G0033217.1 mouse_genomes_project 8 123151116 123152172 + Cox4i1 protein_coding retained_intron MGP_CASTEiJ_T0090677.1 MGP_CASTEiJ_G0033163.1 mouse_genomes_project 8 113715349 113742888 - MGP_CASTEiJ_P0090677 Adat1 protein_coding protein_coding MGP_CASTEiJ_T0090678.1 MGP_CASTEiJ_G0033163.1 mouse_genomes_project 8 113720297 113742836 - MGP_CASTEiJ_P0090678 Adat1 protein_coding protein_coding MGP_CASTEiJ_T0090477.1 MGP_CASTEiJ_G0033100.1 mouse_genomes_project 8 108204732 108213024 - MGP_CASTEiJ_P0090477 protein_coding protein_coding MGP_CASTEiJ_T0090478.1 MGP_CASTEiJ_G0033100.1 mouse_genomes_project 8 108205380 108213022 - MGP_CASTEiJ_P0090478 protein_coding protein_coding MGP_CASTEiJ_T0090479.1 MGP_CASTEiJ_G0033100.1 mouse_genomes_project 8 108205479 108212946 - MGP_CASTEiJ_P0090479 protein_coding protein_coding MGP_CASTEiJ_T0090480.1 MGP_CASTEiJ_G0033100.1 mouse_genomes_project 8 108205556 108213032 - MGP_CASTEiJ_P0090480 protein_coding protein_coding MGP_CASTEiJ_T0015410.1 MGP_CASTEiJ_G0013573.1 mouse_genomes_project 8 130466982 130467417 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010647.1 MGP_CASTEiJ_G0008835.1 mouse_genomes_project 8 22716699 22716808 - Mir8108 miRNA miRNA MGP_CASTEiJ_T0090426.1 MGP_CASTEiJ_G0033079.1 mouse_genomes_project 8 107192018 107193887 - MGP_CASTEiJ_P0090426 Ctrl protein_coding protein_coding MGP_CASTEiJ_T0090693.1 MGP_CASTEiJ_G0033170.1 mouse_genomes_project 8 116023281 116044974 + MGP_CASTEiJ_P0090693 Nudt7 protein_coding protein_coding MGP_CASTEiJ_T0090694.1 MGP_CASTEiJ_G0033170.1 mouse_genomes_project 8 116023298 116042560 + MGP_CASTEiJ_P0090694 Nudt7 protein_coding protein_coding MGP_CASTEiJ_T0090695.1 MGP_CASTEiJ_G0033170.1 mouse_genomes_project 8 116023342 116042570 + MGP_CASTEiJ_P0090695 Nudt7 protein_coding protein_coding MGP_CASTEiJ_T0090696.1 MGP_CASTEiJ_G0033170.1 mouse_genomes_project 8 116023365 116042564 + MGP_CASTEiJ_P0090696 Nudt7 protein_coding protein_coding MGP_CASTEiJ_T0090697.1 MGP_CASTEiJ_G0033170.1 mouse_genomes_project 8 116023366 116038741 + MGP_CASTEiJ_P0090697 Nudt7 protein_coding protein_coding MGP_CASTEiJ_T0010638.1 MGP_CASTEiJ_G0008826.1 mouse_genomes_project 8 10320352 10320413 + Mir7065 miRNA miRNA MGP_CASTEiJ_T0089410.1 MGP_CASTEiJ_G0032750.1 mouse_genomes_project 8 70427422 70429030 + MGP_CASTEiJ_P0089410 protein_coding protein_coding MGP_CASTEiJ_T0011393.1 MGP_CASTEiJ_G0009581.1 mouse_genomes_project 8 95217672 95217942 - Gm22846 misc_RNA misc_RNA MGP_CASTEiJ_T0090886.1 MGP_CASTEiJ_G0033226.1 mouse_genomes_project 8 124173510 124241421 - MGP_CASTEiJ_P0090886 Zcchc14 protein_coding protein_coding MGP_CASTEiJ_T0090887.1 MGP_CASTEiJ_G0033226.1 mouse_genomes_project 8 124175164 124180688 - MGP_CASTEiJ_P0090887 Zcchc14 protein_coding protein_coding MGP_CASTEiJ_T0090888.1 MGP_CASTEiJ_G0033226.1 mouse_genomes_project 8 124182391 124183394 - Zcchc14 protein_coding retained_intron MGP_CASTEiJ_T0090889.1 MGP_CASTEiJ_G0033226.1 mouse_genomes_project 8 124184600 124210648 - Zcchc14 protein_coding retained_intron MGP_CASTEiJ_T0008954.1 MGP_CASTEiJ_G0007210.1 mouse_genomes_project 8 123523807 123524071 + Gm28324 lincRNA lincRNA MGP_CASTEiJ_T0010671.1 MGP_CASTEiJ_G0008859.1 mouse_genomes_project 8 83980582 83980719 + Mir8111 miRNA miRNA MGP_CASTEiJ_T0015396.1 MGP_CASTEiJ_G0013559.1 mouse_genomes_project 8 85919876 85920941 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011375.1 MGP_CASTEiJ_G0009563.1 mouse_genomes_project 8 566048 566375 + Gm22204 misc_RNA misc_RNA MGP_CASTEiJ_T0088432.1 MGP_CASTEiJ_G0032436.1 mouse_genomes_project 8 16958930 16959143 - MGP_CASTEiJ_P0088432 Defb8 protein_coding protein_coding MGP_CASTEiJ_T0089255.1 MGP_CASTEiJ_G0032705.1 mouse_genomes_project 8 69570721 69573003 + MGP_CASTEiJ_P0089255 Nr2c2ap protein_coding protein_coding MGP_CASTEiJ_T0090285.1 MGP_CASTEiJ_G0033025.1 mouse_genomes_project 8 105646091 105674277 - MGP_CASTEiJ_P0090285 Nae1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090286.1 MGP_CASTEiJ_G0033025.1 mouse_genomes_project 8 105646095 105663186 - Nae1 protein_coding processed_transcript MGP_CASTEiJ_T0090287.1 MGP_CASTEiJ_G0033025.1 mouse_genomes_project 8 105646095 105674264 - MGP_CASTEiJ_P0090287 Nae1 protein_coding protein_coding MGP_CASTEiJ_T0090288.1 MGP_CASTEiJ_G0033025.1 mouse_genomes_project 8 105646095 105674263 - MGP_CASTEiJ_P0090288 Nae1 protein_coding protein_coding MGP_CASTEiJ_T0090289.1 MGP_CASTEiJ_G0033025.1 mouse_genomes_project 8 105646101 105654537 - Nae1 protein_coding retained_intron MGP_CASTEiJ_T0090290.1 MGP_CASTEiJ_G0033025.1 mouse_genomes_project 8 105646104 105655591 - Nae1 protein_coding retained_intron MGP_CASTEiJ_T0090291.1 MGP_CASTEiJ_G0033025.1 mouse_genomes_project 8 105648272 105654597 - Nae1 protein_coding retained_intron MGP_CASTEiJ_T0090292.1 MGP_CASTEiJ_G0033025.1 mouse_genomes_project 8 105655084 105667925 - Nae1 protein_coding retained_intron MGP_CASTEiJ_T0090293.1 MGP_CASTEiJ_G0033025.1 mouse_genomes_project 8 105658380 105663218 - Nae1 protein_coding retained_intron MGP_CASTEiJ_T0090294.1 MGP_CASTEiJ_G0033025.1 mouse_genomes_project 8 105662909 105674215 - Nae1 protein_coding retained_intron MGP_CASTEiJ_T0090295.1 MGP_CASTEiJ_G0033025.1 mouse_genomes_project 8 105663338 105667339 - Nae1 protein_coding retained_intron MGP_CASTEiJ_T0090296.1 MGP_CASTEiJ_G0033025.1 mouse_genomes_project 8 105668040 105674241 - Nae1 protein_coding retained_intron MGP_CASTEiJ_T0015403.1 MGP_CASTEiJ_G0013566.1 mouse_genomes_project 8 106007982 106009008 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088677.1 MGP_CASTEiJ_G0032530.1 mouse_genomes_project 8 28994974 29004973 - MGP_CASTEiJ_P0088677 Mak16 protein_coding protein_coding MGP_CASTEiJ_T0089754.1 MGP_CASTEiJ_G0032859.1 mouse_genomes_project 8 83928159 83942639 + MGP_CASTEiJ_P0089754 Asf1b protein_coding protein_coding MGP_CASTEiJ_T0089755.1 MGP_CASTEiJ_G0032859.1 mouse_genomes_project 8 83928366 83940287 + Asf1b protein_coding processed_transcript MGP_CASTEiJ_T0089756.1 MGP_CASTEiJ_G0032859.1 mouse_genomes_project 8 83937478 83940985 + Asf1b protein_coding retained_intron MGP_CASTEiJ_T0090590.1 MGP_CASTEiJ_G0033140.1 mouse_genomes_project 8 112462637 112470646 + MGP_CASTEiJ_P0090590 Cog4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090591.1 MGP_CASTEiJ_G0033140.1 mouse_genomes_project 8 112462647 112467943 + MGP_CASTEiJ_P0090591 Cog4 protein_coding protein_coding MGP_CASTEiJ_T0090592.1 MGP_CASTEiJ_G0033140.1 mouse_genomes_project 8 112462652 112465881 + Cog4 protein_coding retained_intron MGP_CASTEiJ_T0090593.1 MGP_CASTEiJ_G0033140.1 mouse_genomes_project 8 112462664 112470710 + Cog4 protein_coding processed_transcript MGP_CASTEiJ_T0090594.1 MGP_CASTEiJ_G0033140.1 mouse_genomes_project 8 112462664 112501855 + MGP_CASTEiJ_P0090594 Cog4 protein_coding protein_coding MGP_CASTEiJ_T0090595.1 MGP_CASTEiJ_G0033140.1 mouse_genomes_project 8 112462664 112470747 + MGP_CASTEiJ_P0090595 Cog4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090596.1 MGP_CASTEiJ_G0033140.1 mouse_genomes_project 8 112462664 112470701 + MGP_CASTEiJ_P0090596 Cog4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090597.1 MGP_CASTEiJ_G0033140.1 mouse_genomes_project 8 112462667 112501488 + MGP_CASTEiJ_P0090597 Cog4 protein_coding protein_coding MGP_CASTEiJ_T0090598.1 MGP_CASTEiJ_G0033140.1 mouse_genomes_project 8 112465478 112501844 + MGP_CASTEiJ_P0090598 Cog4 protein_coding protein_coding MGP_CASTEiJ_T0090599.1 MGP_CASTEiJ_G0033140.1 mouse_genomes_project 8 112476577 112486983 + Cog4 protein_coding retained_intron MGP_CASTEiJ_T0090600.1 MGP_CASTEiJ_G0033140.1 mouse_genomes_project 8 112476740 112501488 + MGP_CASTEiJ_P0090600 Cog4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090601.1 MGP_CASTEiJ_G0033140.1 mouse_genomes_project 8 112479971 112483825 + Cog4 protein_coding retained_intron MGP_CASTEiJ_T0090602.1 MGP_CASTEiJ_G0033140.1 mouse_genomes_project 8 112499332 112501379 + Cog4 protein_coding retained_intron MGP_CASTEiJ_T0088810.1 MGP_CASTEiJ_G0032575.1 mouse_genomes_project 8 39349917 39498256 - MGP_CASTEiJ_P0088810 Mtus1 protein_coding protein_coding MGP_CASTEiJ_T0088811.1 MGP_CASTEiJ_G0032575.1 mouse_genomes_project 8 39349921 39479125 - MGP_CASTEiJ_P0088811 Mtus1 protein_coding protein_coding MGP_CASTEiJ_T0088812.1 MGP_CASTEiJ_G0032575.1 mouse_genomes_project 8 39349921 39414957 - MGP_CASTEiJ_P0088812 Mtus1 protein_coding protein_coding MGP_CASTEiJ_T0088813.1 MGP_CASTEiJ_G0032575.1 mouse_genomes_project 8 39350055 39402132 - MGP_CASTEiJ_P0088813 Mtus1 protein_coding protein_coding MGP_CASTEiJ_T0088814.1 MGP_CASTEiJ_G0032575.1 mouse_genomes_project 8 39357770 39359203 - Mtus1 protein_coding retained_intron MGP_CASTEiJ_T0088815.1 MGP_CASTEiJ_G0032575.1 mouse_genomes_project 8 39359676 39375822 - Mtus1 protein_coding processed_transcript MGP_CASTEiJ_T0088816.1 MGP_CASTEiJ_G0032575.1 mouse_genomes_project 8 39359833 39375836 - MGP_CASTEiJ_P0088816 Mtus1 protein_coding protein_coding MGP_CASTEiJ_T0088817.1 MGP_CASTEiJ_G0032575.1 mouse_genomes_project 8 39361347 39375387 - MGP_CASTEiJ_P0088817 Mtus1 protein_coding protein_coding MGP_CASTEiJ_T0088818.1 MGP_CASTEiJ_G0032575.1 mouse_genomes_project 8 39373398 39399879 - Mtus1 protein_coding processed_transcript MGP_CASTEiJ_T0088819.1 MGP_CASTEiJ_G0032575.1 mouse_genomes_project 8 39378033 39414946 - Mtus1 protein_coding processed_transcript MGP_CASTEiJ_T0088820.1 MGP_CASTEiJ_G0032575.1 mouse_genomes_project 8 39378591 39383150 - Mtus1 protein_coding retained_intron MGP_CASTEiJ_T0088821.1 MGP_CASTEiJ_G0032575.1 mouse_genomes_project 8 39410171 39444415 - MGP_CASTEiJ_P0088821 Mtus1 protein_coding protein_coding MGP_CASTEiJ_T0088822.1 MGP_CASTEiJ_G0032575.1 mouse_genomes_project 8 39410286 39498256 - MGP_CASTEiJ_P0088822 Mtus1 protein_coding protein_coding MGP_CASTEiJ_T0088823.1 MGP_CASTEiJ_G0032575.1 mouse_genomes_project 8 39446201 39498248 - MGP_CASTEiJ_P0088823 Mtus1 protein_coding protein_coding MGP_CASTEiJ_T0088227.1 MGP_CASTEiJ_G0032372.1 mouse_genomes_project 8 8638623 8645849 + MGP_CASTEiJ_P0088227 Ing1 protein_coding protein_coding MGP_CASTEiJ_T0101298.1 MGP_CASTEiJ_G0038211.1 mouse_genomes_project 8 23243504 23243634 + Gm24992 snoRNA snoRNA MGP_CASTEiJ_T0015401.1 MGP_CASTEiJ_G0013564.1 mouse_genomes_project 8 99823131 99825838 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005199.1 MGP_CASTEiJ_G0004417.1 mouse_genomes_project 8 13542288 13548571 + Gm16346 antisense antisense MGP_CASTEiJ_T0090883.1 MGP_CASTEiJ_G0033225.1 mouse_genomes_project 8 124160252 124173568 + MGP_CASTEiJ_P0090883 Map1lc3b protein_coding protein_coding MGP_CASTEiJ_T0090884.1 MGP_CASTEiJ_G0033225.1 mouse_genomes_project 8 124160368 124163337 + Map1lc3b protein_coding retained_intron MGP_CASTEiJ_T0090885.1 MGP_CASTEiJ_G0033225.1 mouse_genomes_project 8 124160372 124172814 + Map1lc3b protein_coding retained_intron MGP_CASTEiJ_T0098408.1 MGP_CASTEiJ_G0035339.1 mouse_genomes_project 8 118863493 118864829 - pseudogene pseudogene MGP_CASTEiJ_T0091019.1 MGP_CASTEiJ_G0033261.1 mouse_genomes_project 8 125903419 125915284 - Vps9d1 protein_coding retained_intron MGP_CASTEiJ_T0091020.1 MGP_CASTEiJ_G0033261.1 mouse_genomes_project 8 125903419 125915238 - MGP_CASTEiJ_P0091020 Vps9d1 protein_coding protein_coding MGP_CASTEiJ_T0091021.1 MGP_CASTEiJ_G0033261.1 mouse_genomes_project 8 125903419 125915410 - MGP_CASTEiJ_P0091021 Vps9d1 protein_coding protein_coding MGP_CASTEiJ_T0091022.1 MGP_CASTEiJ_G0033261.1 mouse_genomes_project 8 125903421 125915225 - Vps9d1 protein_coding retained_intron MGP_CASTEiJ_T0091023.1 MGP_CASTEiJ_G0033261.1 mouse_genomes_project 8 125903421 125915170 - MGP_CASTEiJ_P0091023 Vps9d1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091024.1 MGP_CASTEiJ_G0033261.1 mouse_genomes_project 8 125903422 125915153 - MGP_CASTEiJ_P0091024 Vps9d1 protein_coding protein_coding MGP_CASTEiJ_T0091025.1 MGP_CASTEiJ_G0033261.1 mouse_genomes_project 8 125906009 125915166 - Vps9d1 protein_coding retained_intron MGP_CASTEiJ_T0091026.1 MGP_CASTEiJ_G0033261.1 mouse_genomes_project 8 125906205 125907993 - Vps9d1 protein_coding processed_transcript MGP_CASTEiJ_T0091027.1 MGP_CASTEiJ_G0033261.1 mouse_genomes_project 8 125907578 125909059 - Vps9d1 protein_coding processed_transcript MGP_CASTEiJ_T0091028.1 MGP_CASTEiJ_G0033261.1 mouse_genomes_project 8 125907919 125909076 - Vps9d1 protein_coding retained_intron MGP_CASTEiJ_T0091029.1 MGP_CASTEiJ_G0033261.1 mouse_genomes_project 8 125909620 125910051 - Vps9d1 protein_coding retained_intron MGP_CASTEiJ_T0091030.1 MGP_CASTEiJ_G0033261.1 mouse_genomes_project 8 125909895 125912131 - Vps9d1 protein_coding retained_intron MGP_CASTEiJ_T0091031.1 MGP_CASTEiJ_G0033261.1 mouse_genomes_project 8 125910771 125915111 - Vps9d1 protein_coding retained_intron MGP_CASTEiJ_T0088736.1 MGP_CASTEiJ_G0032553.1 mouse_genomes_project 8 33557191 33585225 - MGP_CASTEiJ_P0088736 Eri1 protein_coding protein_coding MGP_CASTEiJ_T0088737.1 MGP_CASTEiJ_G0032553.1 mouse_genomes_project 8 33557839 33585093 - MGP_CASTEiJ_P0088737 Eri1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090072.1 MGP_CASTEiJ_G0032949.1 mouse_genomes_project 8 91614507 91999753 + MGP_CASTEiJ_P0090072 Fto protein_coding protein_coding MGP_CASTEiJ_T0090073.1 MGP_CASTEiJ_G0032949.1 mouse_genomes_project 8 91614510 91745769 + Fto protein_coding retained_intron MGP_CASTEiJ_T0090074.1 MGP_CASTEiJ_G0032949.1 mouse_genomes_project 8 91614533 91843572 + Fto protein_coding retained_intron MGP_CASTEiJ_T0090075.1 MGP_CASTEiJ_G0032949.1 mouse_genomes_project 8 91614543 91801396 + Fto protein_coding retained_intron MGP_CASTEiJ_T0090076.1 MGP_CASTEiJ_G0032949.1 mouse_genomes_project 8 91694179 91716336 + MGP_CASTEiJ_P0090076 Fto protein_coding protein_coding MGP_CASTEiJ_T0090077.1 MGP_CASTEiJ_G0032949.1 mouse_genomes_project 8 91696984 91715960 + MGP_CASTEiJ_P0090077 Fto protein_coding protein_coding MGP_CASTEiJ_T0090078.1 MGP_CASTEiJ_G0032949.1 mouse_genomes_project 8 91771029 91998276 + Fto protein_coding processed_transcript MGP_CASTEiJ_T0101299.1 MGP_CASTEiJ_G0038212.1 mouse_genomes_project 8 28985819 28985923 - Snord13 snoRNA snoRNA MGP_CASTEiJ_T0090484.1 MGP_CASTEiJ_G0033103.1 mouse_genomes_project 8 108368042 108384456 + MGP_CASTEiJ_P0090484 Vps4a protein_coding protein_coding MGP_CASTEiJ_T0090486.1 MGP_CASTEiJ_G0033103.1 mouse_genomes_project 8 108377877 108381386 + Vps4a protein_coding retained_intron MGP_CASTEiJ_T0090487.1 MGP_CASTEiJ_G0033103.1 mouse_genomes_project 8 108380953 108381805 + Vps4a protein_coding retained_intron MGP_CASTEiJ_T0002268.1 MGP_CASTEiJ_G0002186.1 mouse_genomes_project 8 122519654 122521174 + TEC TEC MGP_CASTEiJ_T0090175.1 MGP_CASTEiJ_G0032985.1 mouse_genomes_project 8 95299032 95305934 + Cx3cl1 protein_coding processed_transcript MGP_CASTEiJ_T0090176.1 MGP_CASTEiJ_G0032985.1 mouse_genomes_project 8 95299032 95309394 + MGP_CASTEiJ_P0090176 Cx3cl1 protein_coding protein_coding MGP_CASTEiJ_T0090177.1 MGP_CASTEiJ_G0032985.1 mouse_genomes_project 8 95299227 95306622 + MGP_CASTEiJ_P0090177 Cx3cl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090178.1 MGP_CASTEiJ_G0032985.1 mouse_genomes_project 8 95299248 95307006 + MGP_CASTEiJ_P0090178 Cx3cl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089424.1 MGP_CASTEiJ_G0032753.1 mouse_genomes_project 8 70892866 70895747 + MGP_CASTEiJ_P0089424 Use1 protein_coding protein_coding MGP_CASTEiJ_T0089425.1 MGP_CASTEiJ_G0032753.1 mouse_genomes_project 8 70892960 70895750 + MGP_CASTEiJ_P0089425 Use1 protein_coding protein_coding MGP_CASTEiJ_T0089426.1 MGP_CASTEiJ_G0032753.1 mouse_genomes_project 8 70893023 70893825 + MGP_CASTEiJ_P0089426 Use1 protein_coding protein_coding MGP_CASTEiJ_T0089427.1 MGP_CASTEiJ_G0032753.1 mouse_genomes_project 8 70893235 70895750 + Use1 protein_coding retained_intron MGP_CASTEiJ_T0089428.1 MGP_CASTEiJ_G0032753.1 mouse_genomes_project 8 70893235 70895750 + Use1 protein_coding retained_intron MGP_CASTEiJ_T0089429.1 MGP_CASTEiJ_G0032753.1 mouse_genomes_project 8 70893235 70895750 + MGP_CASTEiJ_P0089429 Use1 protein_coding protein_coding MGP_CASTEiJ_T0089430.1 MGP_CASTEiJ_G0032753.1 mouse_genomes_project 8 70893261 70895016 + Use1 protein_coding retained_intron MGP_CASTEiJ_T0089431.1 MGP_CASTEiJ_G0032753.1 mouse_genomes_project 8 70893261 70894849 + Use1 protein_coding retained_intron MGP_CASTEiJ_T0089432.1 MGP_CASTEiJ_G0032753.1 mouse_genomes_project 8 70893402 70894703 + Use1 protein_coding retained_intron MGP_CASTEiJ_T0089433.1 MGP_CASTEiJ_G0032753.1 mouse_genomes_project 8 70893659 70894232 + Use1 protein_coding retained_intron MGP_CASTEiJ_T0089434.1 MGP_CASTEiJ_G0032753.1 mouse_genomes_project 8 70893798 70895750 + Use1 protein_coding retained_intron MGP_CASTEiJ_T0089435.1 MGP_CASTEiJ_G0032753.1 mouse_genomes_project 8 70894809 70895689 + Use1 protein_coding retained_intron MGP_CASTEiJ_T0090323.1 MGP_CASTEiJ_G0033040.1 mouse_genomes_project 8 106370185 106418062 + MGP_CASTEiJ_P0090323 Cbfb protein_coding protein_coding MGP_CASTEiJ_T0090324.1 MGP_CASTEiJ_G0033040.1 mouse_genomes_project 8 106370255 106418054 + MGP_CASTEiJ_P0090324 Cbfb protein_coding protein_coding MGP_CASTEiJ_T0090325.1 MGP_CASTEiJ_G0033040.1 mouse_genomes_project 8 106370255 106418054 + MGP_CASTEiJ_P0090325 Cbfb protein_coding protein_coding MGP_CASTEiJ_T0090326.1 MGP_CASTEiJ_G0033040.1 mouse_genomes_project 8 106370456 106418054 + MGP_CASTEiJ_P0090326 Cbfb protein_coding protein_coding MGP_CASTEiJ_T0090327.1 MGP_CASTEiJ_G0033040.1 mouse_genomes_project 8 106370620 106378855 + Cbfb protein_coding retained_intron MGP_CASTEiJ_T0090328.1 MGP_CASTEiJ_G0033040.1 mouse_genomes_project 8 106371003 106395160 + Cbfb protein_coding processed_transcript MGP_CASTEiJ_T0090329.1 MGP_CASTEiJ_G0033040.1 mouse_genomes_project 8 106371075 106395140 + Cbfb protein_coding processed_transcript MGP_CASTEiJ_T0100098.1 MGP_CASTEiJ_G0037011.1 mouse_genomes_project 8 125640318 125640425 - Gm24445 snRNA snRNA MGP_CASTEiJ_T0088954.1 MGP_CASTEiJ_G0032611.1 mouse_genomes_project 8 46183782 46210888 + MGP_CASTEiJ_P0088954 Rwdd4a protein_coding protein_coding MGP_CASTEiJ_T0088955.1 MGP_CASTEiJ_G0032611.1 mouse_genomes_project 8 46183782 46209345 + MGP_CASTEiJ_P0088955 Rwdd4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088956.1 MGP_CASTEiJ_G0032611.1 mouse_genomes_project 8 46183804 46195627 + MGP_CASTEiJ_P0088956 Rwdd4a protein_coding protein_coding MGP_CASTEiJ_T0088957.1 MGP_CASTEiJ_G0032611.1 mouse_genomes_project 8 46206691 46209356 + Rwdd4a protein_coding processed_transcript MGP_CASTEiJ_T0088958.1 MGP_CASTEiJ_G0032611.1 mouse_genomes_project 8 46208534 46211018 + Rwdd4a protein_coding retained_intron MGP_CASTEiJ_T0090309.1 MGP_CASTEiJ_G0033033.1 mouse_genomes_project 8 106009707 106043329 + MGP_CASTEiJ_P0090309 Ces2c protein_coding protein_coding MGP_CASTEiJ_T0090310.1 MGP_CASTEiJ_G0033033.1 mouse_genomes_project 8 106009764 106027940 + Ces2c protein_coding processed_transcript MGP_CASTEiJ_T0090311.1 MGP_CASTEiJ_G0033033.1 mouse_genomes_project 8 106027938 106043316 + MGP_CASTEiJ_P0090311 Ces2c protein_coding unknown_likely_coding MGP_CASTEiJ_T0090312.1 MGP_CASTEiJ_G0033033.1 mouse_genomes_project 8 106031575 106043329 + Ces2c protein_coding processed_transcript MGP_CASTEiJ_T0090313.1 MGP_CASTEiJ_G0033033.1 mouse_genomes_project 8 106032188 106043329 + Ces2c protein_coding processed_transcript MGP_CASTEiJ_T0088217.1 MGP_CASTEiJ_G0032369.1 mouse_genomes_project 8 8516947 8547055 - MGP_CASTEiJ_P0088217 Rab20 protein_coding unknown_likely_coding MGP_CASTEiJ_T0008867.1 MGP_CASTEiJ_G0007147.1 mouse_genomes_project 8 55661976 55663302 + lincRNA lincRNA MGP_CASTEiJ_T0090113.1 MGP_CASTEiJ_G0032964.1 mouse_genomes_project 8 93795776 93809163 - MGP_CASTEiJ_P0090113 Ces1h protein_coding protein_coding MGP_CASTEiJ_T0089121.1 MGP_CASTEiJ_G0032661.1 mouse_genomes_project 8 64266807 64273776 - MGP_CASTEiJ_P0089121 protein_coding protein_coding MGP_CASTEiJ_T0089122.1 MGP_CASTEiJ_G0032661.1 mouse_genomes_project 8 64268685 64291447 - protein_coding processed_transcript MGP_CASTEiJ_T0089123.1 MGP_CASTEiJ_G0032661.1 mouse_genomes_project 8 64281779 64291523 - MGP_CASTEiJ_P0089123 protein_coding protein_coding MGP_CASTEiJ_T0089124.1 MGP_CASTEiJ_G0032661.1 mouse_genomes_project 8 64281779 64291680 - MGP_CASTEiJ_P0089124 protein_coding protein_coding MGP_CASTEiJ_T0017697.1 MGP_CASTEiJ_G0015022.1 mouse_genomes_project 8 9839284 9840698 + 4931415C17Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017698.1 MGP_CASTEiJ_G0015022.1 mouse_genomes_project 8 9839533 9847673 + 4931415C17Rik processed_transcript processed_transcript MGP_CASTEiJ_T0089795.1 MGP_CASTEiJ_G0032878.1 mouse_genomes_project 8 84254003 84266598 - MGP_CASTEiJ_P0089795 Ccdc130 protein_coding protein_coding MGP_CASTEiJ_T0089796.1 MGP_CASTEiJ_G0032878.1 mouse_genomes_project 8 84254509 84266565 - MGP_CASTEiJ_P0089796 Ccdc130 protein_coding protein_coding MGP_CASTEiJ_T0089797.1 MGP_CASTEiJ_G0032878.1 mouse_genomes_project 8 84254510 84258115 - Ccdc130 protein_coding retained_intron MGP_CASTEiJ_T0089798.1 MGP_CASTEiJ_G0032878.1 mouse_genomes_project 8 84255323 84263050 - MGP_CASTEiJ_P0089798 Ccdc130 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089799.1 MGP_CASTEiJ_G0032878.1 mouse_genomes_project 8 84256604 84258355 - Ccdc130 protein_coding retained_intron MGP_CASTEiJ_T0089800.1 MGP_CASTEiJ_G0032878.1 mouse_genomes_project 8 84260116 84266588 - MGP_CASTEiJ_P0089800 Ccdc130 protein_coding protein_coding MGP_CASTEiJ_T0089801.1 MGP_CASTEiJ_G0032878.1 mouse_genomes_project 8 84260391 84266585 - Ccdc130 protein_coding retained_intron MGP_CASTEiJ_T0090052.1 MGP_CASTEiJ_G0032944.1 mouse_genomes_project 8 91099941 91336482 + MGP_CASTEiJ_P0090052 Chd9 protein_coding protein_coding MGP_CASTEiJ_T0090053.1 MGP_CASTEiJ_G0032944.1 mouse_genomes_project 8 91099941 91336482 + MGP_CASTEiJ_P0090053 Chd9 protein_coding protein_coding MGP_CASTEiJ_T0089771.1 MGP_CASTEiJ_G0032865.1 mouse_genomes_project 8 84008623 84024055 - MGP_CASTEiJ_P0089771 Il27ra protein_coding protein_coding MGP_CASTEiJ_T0099016.1 MGP_CASTEiJ_G0035935.1 mouse_genomes_project 8 67104204 67104594 - sense_intronic sense_intronic MGP_CASTEiJ_T0090381.1 MGP_CASTEiJ_G0033058.1 mouse_genomes_project 8 106683150 106687206 - MGP_CASTEiJ_P0090381 Tppp3 protein_coding protein_coding MGP_CASTEiJ_T0090382.1 MGP_CASTEiJ_G0033058.1 mouse_genomes_project 8 106683326 106685068 - MGP_CASTEiJ_P0090382 Tppp3 protein_coding protein_coding MGP_CASTEiJ_T0090383.1 MGP_CASTEiJ_G0033058.1 mouse_genomes_project 8 106683340 106684320 - MGP_CASTEiJ_P0090383 Tppp3 protein_coding protein_coding MGP_CASTEiJ_T0008971.1 MGP_CASTEiJ_G0007222.1 mouse_genomes_project 8 126376942 126386563 - 4732419C18Rik lincRNA lincRNA MGP_CASTEiJ_T0088835.1 MGP_CASTEiJ_G0032581.1 mouse_genomes_project 8 41584844 41595522 + MGP_CASTEiJ_P0088835 Triml2 protein_coding protein_coding MGP_CASTEiJ_T0088409.1 MGP_CASTEiJ_G0032420.1 mouse_genomes_project 8 16099282 16152419 - MGP_CASTEiJ_P0088409 Angpt2 protein_coding protein_coding MGP_CASTEiJ_T0088410.1 MGP_CASTEiJ_G0032420.1 mouse_genomes_project 8 16101101 16108523 - Angpt2 protein_coding processed_transcript MGP_CASTEiJ_T0088411.1 MGP_CASTEiJ_G0032420.1 mouse_genomes_project 8 16101133 16151990 - MGP_CASTEiJ_P0088411 Angpt2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0015358.1 MGP_CASTEiJ_G0013521.1 mouse_genomes_project 8 20628088 20628343 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090755.1 MGP_CASTEiJ_G0033193.1 mouse_genomes_project 8 121790732 121799713 + MGP_CASTEiJ_P0090755 Osgin1 protein_coding protein_coding MGP_CASTEiJ_T0090756.1 MGP_CASTEiJ_G0033193.1 mouse_genomes_project 8 121793729 121802906 + MGP_CASTEiJ_P0090756 Osgin1 protein_coding protein_coding MGP_CASTEiJ_T0090757.1 MGP_CASTEiJ_G0033193.1 mouse_genomes_project 8 121793733 121799652 + Osgin1 protein_coding processed_transcript MGP_CASTEiJ_T0090758.1 MGP_CASTEiJ_G0033193.1 mouse_genomes_project 8 121793773 121802906 + MGP_CASTEiJ_P0090758 Osgin1 protein_coding protein_coding MGP_CASTEiJ_T0090759.1 MGP_CASTEiJ_G0033193.1 mouse_genomes_project 8 121793778 121802906 + Osgin1 protein_coding retained_intron MGP_CASTEiJ_T0090760.1 MGP_CASTEiJ_G0033193.1 mouse_genomes_project 8 121793800 121801707 + Osgin1 protein_coding retained_intron MGP_CASTEiJ_T0011391.1 MGP_CASTEiJ_G0009579.1 mouse_genomes_project 8 87708610 87708965 + Gm24841 misc_RNA misc_RNA MGP_CASTEiJ_T0090154.1 MGP_CASTEiJ_G0032978.1 mouse_genomes_project 8 94944466 95031051 + MGP_CASTEiJ_P0090154 Nlrc5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090155.1 MGP_CASTEiJ_G0032978.1 mouse_genomes_project 8 94975053 95031061 + MGP_CASTEiJ_P0090155 Nlrc5 protein_coding protein_coding MGP_CASTEiJ_T0090156.1 MGP_CASTEiJ_G0032978.1 mouse_genomes_project 8 94978500 95008427 + Nlrc5 protein_coding retained_intron MGP_CASTEiJ_T0090157.1 MGP_CASTEiJ_G0032978.1 mouse_genomes_project 8 94984157 94993719 + MGP_CASTEiJ_P0090157 Nlrc5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090158.1 MGP_CASTEiJ_G0032978.1 mouse_genomes_project 8 95025243 95027322 + Nlrc5 protein_coding retained_intron MGP_CASTEiJ_T0090159.1 MGP_CASTEiJ_G0032978.1 mouse_genomes_project 8 95028870 95031057 + Nlrc5 protein_coding retained_intron MGP_CASTEiJ_T0090160.1 MGP_CASTEiJ_G0032978.1 mouse_genomes_project 8 95028870 95031053 + MGP_CASTEiJ_P0090160 Nlrc5 protein_coding protein_coding MGP_CASTEiJ_T0088673.1 MGP_CASTEiJ_G0032528.1 mouse_genomes_project 8 28943692 28965119 + MGP_CASTEiJ_P0088673 Rnf122 protein_coding protein_coding MGP_CASTEiJ_T0088674.1 MGP_CASTEiJ_G0032528.1 mouse_genomes_project 8 28943702 28954008 + Rnf122 protein_coding retained_intron MGP_CASTEiJ_T0088675.1 MGP_CASTEiJ_G0032528.1 mouse_genomes_project 8 28944020 28962339 + MGP_CASTEiJ_P0088675 Rnf122 protein_coding unknown_likely_coding MGP_CASTEiJ_T0010636.1 MGP_CASTEiJ_G0008824.1 mouse_genomes_project 8 9831995 9832099 + Gm26483 miRNA miRNA MGP_CASTEiJ_T0089195.1 MGP_CASTEiJ_G0032681.1 mouse_genomes_project 8 68629041 68665997 + MGP_CASTEiJ_P0089195 D130040H23Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0089196.1 MGP_CASTEiJ_G0032681.1 mouse_genomes_project 8 68663703 68666079 + MGP_CASTEiJ_P0089196 D130040H23Rik protein_coding protein_coding MGP_CASTEiJ_T0090506.1 MGP_CASTEiJ_G0033111.1 mouse_genomes_project 8 108662806 108706872 + Nfat5 protein_coding retained_intron MGP_CASTEiJ_T0090507.1 MGP_CASTEiJ_G0033111.1 mouse_genomes_project 8 108662806 108758057 + MGP_CASTEiJ_P0090507 Nfat5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090508.1 MGP_CASTEiJ_G0033111.1 mouse_genomes_project 8 108662806 108750788 + MGP_CASTEiJ_P0090508 Nfat5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090509.1 MGP_CASTEiJ_G0033111.1 mouse_genomes_project 8 108662845 108705406 + Nfat5 protein_coding retained_intron MGP_CASTEiJ_T0090510.1 MGP_CASTEiJ_G0033111.1 mouse_genomes_project 8 108662895 108750739 + MGP_CASTEiJ_P0090510 Nfat5 protein_coding protein_coding MGP_CASTEiJ_T0090511.1 MGP_CASTEiJ_G0033111.1 mouse_genomes_project 8 108662895 108758048 + MGP_CASTEiJ_P0090511 Nfat5 protein_coding protein_coding MGP_CASTEiJ_T0090512.1 MGP_CASTEiJ_G0033111.1 mouse_genomes_project 8 108663162 108752579 + MGP_CASTEiJ_P0090512 Nfat5 protein_coding protein_coding MGP_CASTEiJ_T0090513.1 MGP_CASTEiJ_G0033111.1 mouse_genomes_project 8 108716230 108734329 + Nfat5 protein_coding retained_intron MGP_CASTEiJ_T0090514.1 MGP_CASTEiJ_G0033111.1 mouse_genomes_project 8 108716230 108745969 + Nfat5 protein_coding retained_intron MGP_CASTEiJ_T0090515.1 MGP_CASTEiJ_G0033111.1 mouse_genomes_project 8 108716635 108749223 + MGP_CASTEiJ_P0090515 Nfat5 protein_coding protein_coding MGP_CASTEiJ_T0090516.1 MGP_CASTEiJ_G0033111.1 mouse_genomes_project 8 108721896 108740333 + MGP_CASTEiJ_P0090516 Nfat5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090517.1 MGP_CASTEiJ_G0033111.1 mouse_genomes_project 8 108734408 108752086 + MGP_CASTEiJ_P0090517 Nfat5 protein_coding protein_coding MGP_CASTEiJ_T0010674.1 MGP_CASTEiJ_G0008862.1 mouse_genomes_project 8 84172350 84172422 - Mir181d miRNA miRNA MGP_CASTEiJ_T0089105.1 MGP_CASTEiJ_G0032654.1 mouse_genomes_project 8 63217082 63443871 - MGP_CASTEiJ_P0089105 Tll1 protein_coding protein_coding MGP_CASTEiJ_T0015375.1 MGP_CASTEiJ_G0013538.1 mouse_genomes_project 8 72016449 72016852 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090367.1 MGP_CASTEiJ_G0033054.1 mouse_genomes_project 8 106558741 106580457 + MGP_CASTEiJ_P0090367 Slc9a5 protein_coding protein_coding MGP_CASTEiJ_T0088938.1 MGP_CASTEiJ_G0032605.1 mouse_genomes_project 8 45224911 45249279 + MGP_CASTEiJ_P0088938 Casp3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0017695.1 MGP_CASTEiJ_G0015021.1 mouse_genomes_project 8 4735992 4738746 + Gm28262 processed_transcript lincRNA MGP_CASTEiJ_T0017696.1 MGP_CASTEiJ_G0015021.1 mouse_genomes_project 8 4738709 4744293 + Gm28262 processed_transcript TEC MGP_CASTEiJ_T0089680.1 MGP_CASTEiJ_G0032837.1 mouse_genomes_project 8 80798111 80833981 - MGP_CASTEiJ_P0089680 Usp38 protein_coding protein_coding MGP_CASTEiJ_T0090402.1 MGP_CASTEiJ_G0033067.1 mouse_genomes_project 8 106928981 106931322 + MGP_CASTEiJ_P0090402 Pard6a protein_coding protein_coding MGP_CASTEiJ_T0090403.1 MGP_CASTEiJ_G0033067.1 mouse_genomes_project 8 106929474 106931321 + MGP_CASTEiJ_P0090403 Pard6a protein_coding protein_coding MGP_CASTEiJ_T0011386.1 MGP_CASTEiJ_G0009574.1 mouse_genomes_project 8 44696167 44696440 + Gm23030 misc_RNA misc_RNA MGP_CASTEiJ_T0010683.1 MGP_CASTEiJ_G0008871.1 mouse_genomes_project 8 85167455 85167512 - Gm23388 miRNA miRNA MGP_CASTEiJ_T0005253.1 MGP_CASTEiJ_G0004462.1 mouse_genomes_project 8 117711738 117713877 + Gm15655 antisense antisense MGP_CASTEiJ_T0088662.1 MGP_CASTEiJ_G0032523.1 mouse_genomes_project 8 25152182 25184347 + MGP_CASTEiJ_P0088662 Chrnb3 protein_coding protein_coding MGP_CASTEiJ_T0088663.1 MGP_CASTEiJ_G0032523.1 mouse_genomes_project 8 25152182 25184347 + MGP_CASTEiJ_P0088663 Chrnb3 protein_coding protein_coding MGP_CASTEiJ_T0010695.1 MGP_CASTEiJ_G0008883.1 mouse_genomes_project 8 106516238 106516335 - Mir328 miRNA miRNA MGP_CASTEiJ_T0010716.1 MGP_CASTEiJ_G0008904.1 mouse_genomes_project 8 125768981 125769050 + Mir7079 miRNA miRNA MGP_CASTEiJ_T0005206.1 MGP_CASTEiJ_G0004422.1 mouse_genomes_project 8 23719726 23742614 + antisense antisense MGP_CASTEiJ_T0005207.1 MGP_CASTEiJ_G0004422.1 mouse_genomes_project 8 23719733 23726412 + antisense antisense MGP_CASTEiJ_T0091078.1 MGP_CASTEiJ_G0033273.1 mouse_genomes_project 8 126443807 126476259 + MGP_CASTEiJ_P0091078 Rab4a protein_coding protein_coding MGP_CASTEiJ_T0091079.1 MGP_CASTEiJ_G0033273.1 mouse_genomes_project 8 126443890 126475454 + MGP_CASTEiJ_P0091079 Rab4a protein_coding protein_coding MGP_CASTEiJ_T0090943.1 MGP_CASTEiJ_G0033236.1 mouse_genomes_project 8 125044982 125053125 - MGP_CASTEiJ_P0090943 Cyba protein_coding protein_coding MGP_CASTEiJ_T0005197.1 MGP_CASTEiJ_G0004415.1 mouse_genomes_project 8 12290429 12290946 - Gm16350 antisense antisense MGP_CASTEiJ_T0100099.1 MGP_CASTEiJ_G0037012.1 mouse_genomes_project 8 127020488 127020574 + Gm24459 snRNA snRNA MGP_CASTEiJ_T0089098.1 MGP_CASTEiJ_G0032652.1 mouse_genomes_project 8 62070447 62518085 + MGP_CASTEiJ_P0089098 Spock3 protein_coding protein_coding MGP_CASTEiJ_T0089099.1 MGP_CASTEiJ_G0032652.1 mouse_genomes_project 8 62070670 62518093 + MGP_CASTEiJ_P0089099 Spock3 protein_coding protein_coding MGP_CASTEiJ_T0089100.1 MGP_CASTEiJ_G0032652.1 mouse_genomes_project 8 62070799 62289574 + Spock3 protein_coding retained_intron MGP_CASTEiJ_T0089101.1 MGP_CASTEiJ_G0032652.1 mouse_genomes_project 8 62070799 62518336 + MGP_CASTEiJ_P0089101 Spock3 protein_coding protein_coding MGP_CASTEiJ_T0089102.1 MGP_CASTEiJ_G0032652.1 mouse_genomes_project 8 62071238 62518327 + MGP_CASTEiJ_P0089102 Spock3 protein_coding protein_coding MGP_CASTEiJ_T0089103.1 MGP_CASTEiJ_G0032652.1 mouse_genomes_project 8 62071363 62088564 + Spock3 protein_coding processed_transcript MGP_CASTEiJ_T0088996.1 MGP_CASTEiJ_G0032627.1 mouse_genomes_project 8 53779875 53792753 + MGP_CASTEiJ_P0088996 Spata4 protein_coding protein_coding MGP_CASTEiJ_T0088940.1 MGP_CASTEiJ_G0032607.1 mouse_genomes_project 8 45626446 45675671 + Enpp6 protein_coding retained_intron MGP_CASTEiJ_T0088941.1 MGP_CASTEiJ_G0032607.1 mouse_genomes_project 8 45626448 45735733 + Enpp6 protein_coding retained_intron MGP_CASTEiJ_T0088942.1 MGP_CASTEiJ_G0032607.1 mouse_genomes_project 8 45626448 45735733 + MGP_CASTEiJ_P0088942 Enpp6 protein_coding protein_coding MGP_CASTEiJ_T0088943.1 MGP_CASTEiJ_G0032607.1 mouse_genomes_project 8 45626475 45729102 + MGP_CASTEiJ_P0088943 Enpp6 protein_coding protein_coding MGP_CASTEiJ_T0088944.1 MGP_CASTEiJ_G0032607.1 mouse_genomes_project 8 45626492 45737587 + MGP_CASTEiJ_P0088944 Enpp6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088945.1 MGP_CASTEiJ_G0032607.1 mouse_genomes_project 8 45717420 45729794 + MGP_CASTEiJ_P0088945 Enpp6 protein_coding protein_coding MGP_CASTEiJ_T0090259.1 MGP_CASTEiJ_G0033012.1 mouse_genomes_project 8 96422611 96447669 - MGP_CASTEiJ_P0090259 Got2 protein_coding protein_coding MGP_CASTEiJ_T0090260.1 MGP_CASTEiJ_G0033012.1 mouse_genomes_project 8 96425244 96430813 - Got2 protein_coding processed_transcript MGP_CASTEiJ_T0088849.1 MGP_CASTEiJ_G0032588.1 mouse_genomes_project 8 43788903 43833218 - MGP_CASTEiJ_P0088849 Cyp4v3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088850.1 MGP_CASTEiJ_G0032588.1 mouse_genomes_project 8 43829697 43864650 - MGP_CASTEiJ_P0088850 Cyp4v3 protein_coding protein_coding MGP_CASTEiJ_T0017707.1 MGP_CASTEiJ_G0015028.1 mouse_genomes_project 8 43574490 43578935 - AY512931 processed_transcript processed_transcript MGP_CASTEiJ_T0100093.1 MGP_CASTEiJ_G0037006.1 mouse_genomes_project 8 115382309 115382478 - Gm24291 snRNA snRNA MGP_CASTEiJ_T0101310.1 MGP_CASTEiJ_G0038223.1 mouse_genomes_project 8 55502983 55503115 - Gm24375 snoRNA snoRNA MGP_CASTEiJ_T0089399.1 MGP_CASTEiJ_G0032741.1 mouse_genomes_project 8 70257280 70273064 - MGP_CASTEiJ_P0089399 Mast3 protein_coding protein_coding MGP_CASTEiJ_T0090007.1 MGP_CASTEiJ_G0032931.1 mouse_genomes_project 8 87735442 88051818 - MGP_CASTEiJ_P0090007 Zfp423 protein_coding protein_coding MGP_CASTEiJ_T0090008.1 MGP_CASTEiJ_G0032931.1 mouse_genomes_project 8 87735445 87984059 - MGP_CASTEiJ_P0090008 Zfp423 protein_coding protein_coding MGP_CASTEiJ_T0090009.1 MGP_CASTEiJ_G0032931.1 mouse_genomes_project 8 87858527 88046573 - MGP_CASTEiJ_P0090009 Zfp423 protein_coding protein_coding MGP_CASTEiJ_T0090010.1 MGP_CASTEiJ_G0032931.1 mouse_genomes_project 8 87858682 87880662 - MGP_CASTEiJ_P0090010 Zfp423 protein_coding protein_coding MGP_CASTEiJ_T0090011.1 MGP_CASTEiJ_G0032931.1 mouse_genomes_project 8 87858851 88034855 - Zfp423 protein_coding processed_transcript MGP_CASTEiJ_T0090012.1 MGP_CASTEiJ_G0032931.1 mouse_genomes_project 8 87858868 88039537 - Zfp423 protein_coding processed_transcript MGP_CASTEiJ_T0090234.1 MGP_CASTEiJ_G0033003.1 mouse_genomes_project 8 95959688 95973908 - MGP_CASTEiJ_P0090234 Cfap20 protein_coding protein_coding MGP_CASTEiJ_T0099019.1 MGP_CASTEiJ_G0035938.1 mouse_genomes_project 8 122987336 122988409 + Gm26971 sense_intronic sense_intronic MGP_CASTEiJ_T0010635.1 MGP_CASTEiJ_G0008823.1 mouse_genomes_project 8 8730227 8730270 - Mir7238 miRNA miRNA MGP_CASTEiJ_T0088706.1 MGP_CASTEiJ_G0032544.1 mouse_genomes_project 8 31747898 31903759 - MGP_CASTEiJ_P0088706 Rbpms protein_coding protein_coding MGP_CASTEiJ_T0088707.1 MGP_CASTEiJ_G0032544.1 mouse_genomes_project 8 31747899 31903759 - MGP_CASTEiJ_P0088707 Rbpms protein_coding protein_coding MGP_CASTEiJ_T0088708.1 MGP_CASTEiJ_G0032544.1 mouse_genomes_project 8 31747902 31903759 - MGP_CASTEiJ_P0088708 Rbpms protein_coding protein_coding MGP_CASTEiJ_T0088709.1 MGP_CASTEiJ_G0032544.1 mouse_genomes_project 8 31749036 31903759 - MGP_CASTEiJ_P0088709 Rbpms protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088710.1 MGP_CASTEiJ_G0032544.1 mouse_genomes_project 8 31749307 31814134 - MGP_CASTEiJ_P0088710 Rbpms protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088711.1 MGP_CASTEiJ_G0032544.1 mouse_genomes_project 8 31749316 31772066 - MGP_CASTEiJ_P0088711 Rbpms protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088712.1 MGP_CASTEiJ_G0032544.1 mouse_genomes_project 8 31749319 31772029 - MGP_CASTEiJ_P0088712 Rbpms protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088713.1 MGP_CASTEiJ_G0032544.1 mouse_genomes_project 8 31749321 31824390 - Rbpms protein_coding processed_transcript MGP_CASTEiJ_T0088714.1 MGP_CASTEiJ_G0032544.1 mouse_genomes_project 8 31749327 31762494 - Rbpms protein_coding retained_intron MGP_CASTEiJ_T0088715.1 MGP_CASTEiJ_G0032544.1 mouse_genomes_project 8 31749436 31762163 - MGP_CASTEiJ_P0088715 Rbpms protein_coding unknown_likely_coding MGP_CASTEiJ_T0088716.1 MGP_CASTEiJ_G0032544.1 mouse_genomes_project 8 31769179 31903759 - MGP_CASTEiJ_P0088716 Rbpms protein_coding protein_coding MGP_CASTEiJ_T0088717.1 MGP_CASTEiJ_G0032544.1 mouse_genomes_project 8 31771971 31812895 - MGP_CASTEiJ_P0088717 Rbpms protein_coding protein_coding MGP_CASTEiJ_T0088718.1 MGP_CASTEiJ_G0032544.1 mouse_genomes_project 8 31834623 31864889 - Rbpms protein_coding processed_transcript MGP_CASTEiJ_T0088291.1 MGP_CASTEiJ_G0032385.1 mouse_genomes_project 8 10221418 10241058 + MGP_CASTEiJ_P0088291 F10 protein_coding protein_coding MGP_CASTEiJ_T0088292.1 MGP_CASTEiJ_G0032385.1 mouse_genomes_project 8 10221432 10240286 + MGP_CASTEiJ_P0088292 F10 protein_coding protein_coding MGP_CASTEiJ_T0088293.1 MGP_CASTEiJ_G0032385.1 mouse_genomes_project 8 10221697 10230317 + MGP_CASTEiJ_P0088293 F10 protein_coding protein_coding MGP_CASTEiJ_T0088294.1 MGP_CASTEiJ_G0032385.1 mouse_genomes_project 8 10221948 10240281 + MGP_CASTEiJ_P0088294 F10 protein_coding protein_coding MGP_CASTEiJ_T0088295.1 MGP_CASTEiJ_G0032385.1 mouse_genomes_project 8 10221948 10240221 + MGP_CASTEiJ_P0088295 F10 protein_coding protein_coding MGP_CASTEiJ_T0089995.1 MGP_CASTEiJ_G0032925.1 mouse_genomes_project 8 86666823 86757626 + MGP_CASTEiJ_P0089995 Lonp2 protein_coding protein_coding MGP_CASTEiJ_T0089996.1 MGP_CASTEiJ_G0032925.1 mouse_genomes_project 8 86666867 86685791 + Lonp2 protein_coding processed_transcript MGP_CASTEiJ_T0089997.1 MGP_CASTEiJ_G0032925.1 mouse_genomes_project 8 86666885 86757626 + MGP_CASTEiJ_P0089997 Lonp2 protein_coding protein_coding MGP_CASTEiJ_T0089998.1 MGP_CASTEiJ_G0032925.1 mouse_genomes_project 8 86675522 86708051 + Lonp2 protein_coding processed_transcript MGP_CASTEiJ_T0089999.1 MGP_CASTEiJ_G0032925.1 mouse_genomes_project 8 86695481 86757627 + MGP_CASTEiJ_P0089999 Lonp2 protein_coding protein_coding MGP_CASTEiJ_T0090000.1 MGP_CASTEiJ_G0032925.1 mouse_genomes_project 8 86695481 86757627 + MGP_CASTEiJ_P0090000 Lonp2 protein_coding protein_coding MGP_CASTEiJ_T0091058.1 MGP_CASTEiJ_G0033268.1 mouse_genomes_project 8 126125799 126154813 + MGP_CASTEiJ_P0091058 Def8 protein_coding protein_coding MGP_CASTEiJ_T0091059.1 MGP_CASTEiJ_G0033268.1 mouse_genomes_project 8 126125799 126154813 + MGP_CASTEiJ_P0091059 Def8 protein_coding protein_coding MGP_CASTEiJ_T0091060.1 MGP_CASTEiJ_G0033268.1 mouse_genomes_project 8 126125799 126152126 + MGP_CASTEiJ_P0091060 Def8 protein_coding protein_coding MGP_CASTEiJ_T0091061.1 MGP_CASTEiJ_G0033268.1 mouse_genomes_project 8 126125809 126144698 + MGP_CASTEiJ_P0091061 Def8 protein_coding protein_coding MGP_CASTEiJ_T0091062.1 MGP_CASTEiJ_G0033268.1 mouse_genomes_project 8 126125818 126154813 + MGP_CASTEiJ_P0091062 Def8 protein_coding protein_coding MGP_CASTEiJ_T0091063.1 MGP_CASTEiJ_G0033268.1 mouse_genomes_project 8 126125821 126144634 + MGP_CASTEiJ_P0091063 Def8 protein_coding protein_coding MGP_CASTEiJ_T0091064.1 MGP_CASTEiJ_G0033268.1 mouse_genomes_project 8 126125825 126147352 + MGP_CASTEiJ_P0091064 Def8 protein_coding protein_coding MGP_CASTEiJ_T0091065.1 MGP_CASTEiJ_G0033268.1 mouse_genomes_project 8 126126121 126154805 + MGP_CASTEiJ_P0091065 Def8 protein_coding protein_coding MGP_CASTEiJ_T0088734.1 MGP_CASTEiJ_G0032551.1 mouse_genomes_project 8 32866114 33009651 - MGP_CASTEiJ_P0088734 Tnks protein_coding protein_coding MGP_CASTEiJ_T0088542.1 MGP_CASTEiJ_G0032489.1 mouse_genomes_project 8 22213244 22227043 - MGP_CASTEiJ_P0088542 Adam3 protein_coding protein_coding MGP_CASTEiJ_T0088543.1 MGP_CASTEiJ_G0032489.1 mouse_genomes_project 8 22213251 22274182 - MGP_CASTEiJ_P0088543 Adam3 protein_coding protein_coding MGP_CASTEiJ_T0088544.1 MGP_CASTEiJ_G0032489.1 mouse_genomes_project 8 22213320 22274138 - MGP_CASTEiJ_P0088544 Adam3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088545.1 MGP_CASTEiJ_G0032489.1 mouse_genomes_project 8 22216640 22274128 - MGP_CASTEiJ_P0088545 Adam3 protein_coding protein_coding MGP_CASTEiJ_T0088546.1 MGP_CASTEiJ_G0032489.1 mouse_genomes_project 8 22249658 22274128 - MGP_CASTEiJ_P0088546 Adam3 protein_coding protein_coding MGP_CASTEiJ_T0088547.1 MGP_CASTEiJ_G0032489.1 mouse_genomes_project 8 22260820 22274125 - Adam3 protein_coding processed_transcript MGP_CASTEiJ_T0088548.1 MGP_CASTEiJ_G0032489.1 mouse_genomes_project 8 22260894 22274140 - Adam3 protein_coding processed_transcript MGP_CASTEiJ_T0088549.1 MGP_CASTEiJ_G0032489.1 mouse_genomes_project 8 22260895 22274165 - Adam3 protein_coding processed_transcript MGP_CASTEiJ_T0088550.1 MGP_CASTEiJ_G0032489.1 mouse_genomes_project 8 22260934 22274128 - MGP_CASTEiJ_P0088550 Adam3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088551.1 MGP_CASTEiJ_G0032489.1 mouse_genomes_project 8 22260959 22274122 - MGP_CASTEiJ_P0088551 Adam3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090427.1 MGP_CASTEiJ_G0033080.1 mouse_genomes_project 8 107195779 107198447 - MGP_CASTEiJ_P0090427 Psmb10 protein_coding protein_coding MGP_CASTEiJ_T0008843.1 MGP_CASTEiJ_G0007127.1 mouse_genomes_project 8 19850911 19851788 + 1810012K16Rik lincRNA lincRNA MGP_CASTEiJ_T0008962.1 MGP_CASTEiJ_G0007216.1 mouse_genomes_project 8 124110474 124115438 + 1700030M09Rik lincRNA lincRNA MGP_CASTEiJ_T0008963.1 MGP_CASTEiJ_G0007216.1 mouse_genomes_project 8 124110480 124114445 + 1700030M09Rik lincRNA lincRNA MGP_CASTEiJ_T0090239.1 MGP_CASTEiJ_G0033007.1 mouse_genomes_project 8 96178911 96192084 + MGP_CASTEiJ_P0090239 Gins3 protein_coding protein_coding MGP_CASTEiJ_T0010648.1 MGP_CASTEiJ_G0008836.1 mouse_genomes_project 8 23870943 23871018 + miRNA miRNA MGP_CASTEiJ_T0008862.1 MGP_CASTEiJ_G0007142.1 mouse_genomes_project 8 39209806 39214260 - Gm26584 lincRNA lincRNA MGP_CASTEiJ_T0091126.1 MGP_CASTEiJ_G0033290.1 mouse_genomes_project 8 127551494 127568591 - MGP_CASTEiJ_P0091126 2810004N23Rik protein_coding protein_coding MGP_CASTEiJ_T0017732.1 MGP_CASTEiJ_G0015036.1 mouse_genomes_project 8 85107781 85116161 - A230103J11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017733.1 MGP_CASTEiJ_G0015036.1 mouse_genomes_project 8 85107810 85116144 - A230103J11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0089144.1 MGP_CASTEiJ_G0032668.1 mouse_genomes_project 8 66135683 66171613 + MGP_CASTEiJ_P0089144 Naf1 protein_coding protein_coding MGP_CASTEiJ_T0089145.1 MGP_CASTEiJ_G0032668.1 mouse_genomes_project 8 66135767 66169321 + MGP_CASTEiJ_P0089145 Naf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0089051.1 MGP_CASTEiJ_G0032644.1 mouse_genomes_project 8 59948078 59965900 + MGP_CASTEiJ_P0089051 Hpf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089052.1 MGP_CASTEiJ_G0032644.1 mouse_genomes_project 8 59948105 59965898 + MGP_CASTEiJ_P0089052 Hpf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089053.1 MGP_CASTEiJ_G0032644.1 mouse_genomes_project 8 59948111 59965905 + MGP_CASTEiJ_P0089053 Hpf1 protein_coding protein_coding MGP_CASTEiJ_T0089054.1 MGP_CASTEiJ_G0032644.1 mouse_genomes_project 8 59948111 59964295 + MGP_CASTEiJ_P0089054 Hpf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089055.1 MGP_CASTEiJ_G0032644.1 mouse_genomes_project 8 59948149 59954737 + Hpf1 protein_coding retained_intron MGP_CASTEiJ_T0090240.1 MGP_CASTEiJ_G0033008.1 mouse_genomes_project 8 96227546 96259547 + MGP_CASTEiJ_P0090240 Ndrg4 protein_coding protein_coding MGP_CASTEiJ_T0090241.1 MGP_CASTEiJ_G0033008.1 mouse_genomes_project 8 96228802 96267277 + MGP_CASTEiJ_P0090241 Ndrg4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090242.1 MGP_CASTEiJ_G0033008.1 mouse_genomes_project 8 96228904 96267290 + MGP_CASTEiJ_P0090242 Ndrg4 protein_coding protein_coding MGP_CASTEiJ_T0090243.1 MGP_CASTEiJ_G0033008.1 mouse_genomes_project 8 96256964 96263461 + Ndrg4 protein_coding processed_transcript MGP_CASTEiJ_T0090244.1 MGP_CASTEiJ_G0033008.1 mouse_genomes_project 8 96259512 96263959 + Ndrg4 protein_coding retained_intron MGP_CASTEiJ_T0090245.1 MGP_CASTEiJ_G0033008.1 mouse_genomes_project 8 96260309 96266239 + Ndrg4 protein_coding processed_transcript MGP_CASTEiJ_T0090246.1 MGP_CASTEiJ_G0033008.1 mouse_genomes_project 8 96260869 96263868 + Ndrg4 protein_coding retained_intron MGP_CASTEiJ_T0090247.1 MGP_CASTEiJ_G0033008.1 mouse_genomes_project 8 96264210 96265536 + Ndrg4 protein_coding retained_intron MGP_CASTEiJ_T0015341.1 MGP_CASTEiJ_G0013504.1 mouse_genomes_project 8 1705582 1706065 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090319.1 MGP_CASTEiJ_G0033038.1 mouse_genomes_project 8 106261454 106271232 + MGP_CASTEiJ_P0090319 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090320.1 MGP_CASTEiJ_G0033038.1 mouse_genomes_project 8 106261472 106271232 + MGP_CASTEiJ_P0090320 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090321.1 MGP_CASTEiJ_G0033038.1 mouse_genomes_project 8 106266017 106270479 + MGP_CASTEiJ_P0090321 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090739.1 MGP_CASTEiJ_G0033186.1 mouse_genomes_project 8 119712854 119870874 + MGP_CASTEiJ_P0090739 Plcg2 protein_coding protein_coding MGP_CASTEiJ_T0089697.1 MGP_CASTEiJ_G0032843.1 mouse_genomes_project 8 83077993 83190016 + MGP_CASTEiJ_P0089697 Tbc1d9 protein_coding protein_coding MGP_CASTEiJ_T0089698.1 MGP_CASTEiJ_G0032843.1 mouse_genomes_project 8 83078501 83190528 + MGP_CASTEiJ_P0089698 Tbc1d9 protein_coding protein_coding MGP_CASTEiJ_T0089699.1 MGP_CASTEiJ_G0032843.1 mouse_genomes_project 8 83174786 83188543 + Tbc1d9 protein_coding retained_intron MGP_CASTEiJ_T0089440.1 MGP_CASTEiJ_G0032755.1 mouse_genomes_project 8 70902420 70910213 - Nr2f6 protein_coding processed_transcript MGP_CASTEiJ_T0089441.1 MGP_CASTEiJ_G0032755.1 mouse_genomes_project 8 70902424 70910267 - MGP_CASTEiJ_P0089441 Nr2f6 protein_coding protein_coding MGP_CASTEiJ_T0089442.1 MGP_CASTEiJ_G0032755.1 mouse_genomes_project 8 70902931 70904094 - Nr2f6 protein_coding processed_transcript MGP_CASTEiJ_T0089443.1 MGP_CASTEiJ_G0032755.1 mouse_genomes_project 8 70902956 70904094 - Nr2f6 protein_coding processed_transcript MGP_CASTEiJ_T0089444.1 MGP_CASTEiJ_G0032755.1 mouse_genomes_project 8 70903421 70904094 - Nr2f6 protein_coding processed_transcript MGP_CASTEiJ_T0089445.1 MGP_CASTEiJ_G0032755.1 mouse_genomes_project 8 70904055 70909216 - Nr2f6 protein_coding processed_transcript MGP_CASTEiJ_T0089446.1 MGP_CASTEiJ_G0032755.1 mouse_genomes_project 8 70904055 70909397 - MGP_CASTEiJ_P0089446 Nr2f6 protein_coding protein_coding MGP_CASTEiJ_T0089447.1 MGP_CASTEiJ_G0032755.1 mouse_genomes_project 8 70904122 70909484 - MGP_CASTEiJ_P0089447 Nr2f6 protein_coding protein_coding MGP_CASTEiJ_T0089175.1 MGP_CASTEiJ_G0032676.1 mouse_genomes_project 8 68204613 68232245 + MGP_CASTEiJ_P0089175 Lpl protein_coding protein_coding MGP_CASTEiJ_T0089176.1 MGP_CASTEiJ_G0032676.1 mouse_genomes_project 8 68204677 68232768 + MGP_CASTEiJ_P0089176 Lpl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089177.1 MGP_CASTEiJ_G0032676.1 mouse_genomes_project 8 68204779 68214730 + Lpl protein_coding retained_intron MGP_CASTEiJ_T0089178.1 MGP_CASTEiJ_G0032676.1 mouse_genomes_project 8 68215792 68220879 + Lpl protein_coding processed_transcript MGP_CASTEiJ_T0099018.1 MGP_CASTEiJ_G0035937.1 mouse_genomes_project 8 122504680 122507514 + Gm15898 sense_intronic sense_intronic MGP_CASTEiJ_T0008970.1 MGP_CASTEiJ_G0007221.1 mouse_genomes_project 8 125896322 125903423 + 4933417D19Rik lincRNA lincRNA MGP_CASTEiJ_T0088073.1 MGP_CASTEiJ_G0032325.1 mouse_genomes_project 8 442417 459215 + MGP_CASTEiJ_P0088073 Mcoln1 protein_coding protein_coding MGP_CASTEiJ_T0088074.1 MGP_CASTEiJ_G0032325.1 mouse_genomes_project 8 442464 451000 + MGP_CASTEiJ_P0088074 Mcoln1 protein_coding protein_coding MGP_CASTEiJ_T0088075.1 MGP_CASTEiJ_G0032325.1 mouse_genomes_project 8 449838 459215 + Mcoln1 protein_coding retained_intron MGP_CASTEiJ_T0088076.1 MGP_CASTEiJ_G0032325.1 mouse_genomes_project 8 454656 456999 + Mcoln1 protein_coding retained_intron MGP_CASTEiJ_T0088077.1 MGP_CASTEiJ_G0032325.1 mouse_genomes_project 8 455585 456784 + Mcoln1 protein_coding retained_intron MGP_CASTEiJ_T0088078.1 MGP_CASTEiJ_G0032325.1 mouse_genomes_project 8 456658 459207 + Mcoln1 protein_coding retained_intron MGP_CASTEiJ_T0088079.1 MGP_CASTEiJ_G0032325.1 mouse_genomes_project 8 458544 459215 + Mcoln1 protein_coding retained_intron MGP_CASTEiJ_T0089073.1 MGP_CASTEiJ_G0032648.1 mouse_genomes_project 8 60568635 60584433 + MGP_CASTEiJ_P0089073 Cbr4 protein_coding protein_coding MGP_CASTEiJ_T0089074.1 MGP_CASTEiJ_G0032648.1 mouse_genomes_project 8 60568636 60572481 + MGP_CASTEiJ_P0089074 Cbr4 protein_coding protein_coding MGP_CASTEiJ_T0089075.1 MGP_CASTEiJ_G0032648.1 mouse_genomes_project 8 60568656 60572799 + Cbr4 protein_coding retained_intron MGP_CASTEiJ_T0089076.1 MGP_CASTEiJ_G0032648.1 mouse_genomes_project 8 60568670 60584280 + Cbr4 protein_coding retained_intron MGP_CASTEiJ_T0089077.1 MGP_CASTEiJ_G0032648.1 mouse_genomes_project 8 60572304 60584280 + Cbr4 protein_coding retained_intron MGP_CASTEiJ_T0089078.1 MGP_CASTEiJ_G0032648.1 mouse_genomes_project 8 60575747 60584340 + Cbr4 protein_coding retained_intron MGP_CASTEiJ_T0088184.1 MGP_CASTEiJ_G0032353.1 mouse_genomes_project 8 1338954 1364751 + MGP_CASTEiJ_P0088184 Cers4 protein_coding protein_coding MGP_CASTEiJ_T0088185.1 MGP_CASTEiJ_G0032353.1 mouse_genomes_project 8 1339068 1361814 + MGP_CASTEiJ_P0088185 Cers4 protein_coding protein_coding MGP_CASTEiJ_T0088186.1 MGP_CASTEiJ_G0032353.1 mouse_genomes_project 8 1339127 1378747 + MGP_CASTEiJ_P0088186 Cers4 protein_coding protein_coding MGP_CASTEiJ_T0088187.1 MGP_CASTEiJ_G0032353.1 mouse_genomes_project 8 1339329 1369786 + MGP_CASTEiJ_P0088187 Cers4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088188.1 MGP_CASTEiJ_G0032353.1 mouse_genomes_project 8 1339376 1371201 + Cers4 protein_coding retained_intron MGP_CASTEiJ_T0088189.1 MGP_CASTEiJ_G0032353.1 mouse_genomes_project 8 1339379 1371043 + MGP_CASTEiJ_P0088189 Cers4 protein_coding protein_coding MGP_CASTEiJ_T0088190.1 MGP_CASTEiJ_G0032353.1 mouse_genomes_project 8 1339385 1368559 + Cers4 protein_coding retained_intron MGP_CASTEiJ_T0088191.1 MGP_CASTEiJ_G0032353.1 mouse_genomes_project 8 1339409 1368650 + Cers4 protein_coding retained_intron MGP_CASTEiJ_T0088192.1 MGP_CASTEiJ_G0032353.1 mouse_genomes_project 8 1339448 1366620 + Cers4 protein_coding retained_intron MGP_CASTEiJ_T0088059.1 MGP_CASTEiJ_G0032320.1 mouse_genomes_project 8 276120 318743 + MGP_CASTEiJ_P0088059 A430078G23Rik protein_coding protein_coding MGP_CASTEiJ_T0091076.1 MGP_CASTEiJ_G0033272.1 mouse_genomes_project 8 126276147 126278210 + Rhou protein_coding retained_intron MGP_CASTEiJ_T0091077.1 MGP_CASTEiJ_G0033272.1 mouse_genomes_project 8 126276147 126286045 + MGP_CASTEiJ_P0091077 Rhou protein_coding protein_coding MGP_CASTEiJ_T0089852.1 MGP_CASTEiJ_G0032885.1 mouse_genomes_project 8 84743759 84747593 + MGP_CASTEiJ_P0089852 G430095P16Rik protein_coding protein_coding MGP_CASTEiJ_T0101306.1 MGP_CASTEiJ_G0038219.1 mouse_genomes_project 8 44117778 44117910 - Gm23604 snoRNA snoRNA MGP_CASTEiJ_T0088303.1 MGP_CASTEiJ_G0032388.1 mouse_genomes_project 8 10287348 10332201 + MGP_CASTEiJ_P0088303 Cul4a protein_coding protein_coding MGP_CASTEiJ_T0088304.1 MGP_CASTEiJ_G0032388.1 mouse_genomes_project 8 10287467 10306976 + MGP_CASTEiJ_P0088304 Cul4a protein_coding protein_coding MGP_CASTEiJ_T0088305.1 MGP_CASTEiJ_G0032388.1 mouse_genomes_project 8 10287663 10304450 + Cul4a protein_coding retained_intron MGP_CASTEiJ_T0088306.1 MGP_CASTEiJ_G0032388.1 mouse_genomes_project 8 10306278 10331623 + MGP_CASTEiJ_P0088306 Cul4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088307.1 MGP_CASTEiJ_G0032388.1 mouse_genomes_project 8 10324111 10326867 + Cul4a protein_coding retained_intron MGP_CASTEiJ_T0088308.1 MGP_CASTEiJ_G0032388.1 mouse_genomes_project 8 10324575 10330880 + Cul4a protein_coding processed_transcript MGP_CASTEiJ_T0088309.1 MGP_CASTEiJ_G0032388.1 mouse_genomes_project 8 10328479 10332201 + Cul4a protein_coding retained_intron MGP_CASTEiJ_T0088117.1 MGP_CASTEiJ_G0032334.1 mouse_genomes_project 8 617086 620363 + MGP_CASTEiJ_P0088117 Mcemp1 protein_coding protein_coding MGP_CASTEiJ_T0008869.1 MGP_CASTEiJ_G0007149.1 mouse_genomes_project 8 56476391 56497202 + 2500002B13Rik lincRNA lincRNA MGP_CASTEiJ_T0008955.1 MGP_CASTEiJ_G0007211.1 mouse_genomes_project 8 123577607 123607686 - Fendrr lincRNA lincRNA MGP_CASTEiJ_T0008956.1 MGP_CASTEiJ_G0007211.1 mouse_genomes_project 8 123581529 123583140 - Fendrr lincRNA lincRNA MGP_CASTEiJ_T0008957.1 MGP_CASTEiJ_G0007211.1 mouse_genomes_project 8 123581845 123607764 - Fendrr lincRNA lincRNA MGP_CASTEiJ_T0090613.1 MGP_CASTEiJ_G0033144.1 mouse_genomes_project 8 112645248 112668680 - MGP_CASTEiJ_P0090613 protein_coding protein_coding MGP_CASTEiJ_T0088422.1 MGP_CASTEiJ_G0032427.1 mouse_genomes_project 8 16544192 16547098 - MGP_CASTEiJ_P0088422 Defb12 protein_coding protein_coding MGP_CASTEiJ_T0088448.1 MGP_CASTEiJ_G0032451.1 mouse_genomes_project 8 19308643 19309048 - MGP_CASTEiJ_P0088448 Defb9 protein_coding protein_coding MGP_CASTEiJ_T0100087.1 MGP_CASTEiJ_G0037000.1 mouse_genomes_project 8 105642994 105643101 + Gm22148 snRNA snRNA MGP_CASTEiJ_T0088728.1 MGP_CASTEiJ_G0032546.1 mouse_genomes_project 8 32102965 32114731 + MGP_CASTEiJ_P0088728 Mboat4 protein_coding protein_coding MGP_CASTEiJ_T0090274.1 MGP_CASTEiJ_G0033018.1 mouse_genomes_project 8 105349011 105373935 - MGP_CASTEiJ_P0090274 Tk2 protein_coding protein_coding MGP_CASTEiJ_T0098661.1 MGP_CASTEiJ_G0035592.1 mouse_genomes_project 8 46609872 46609985 + n-R5s97 rRNA rRNA MGP_CASTEiJ_T0090233.1 MGP_CASTEiJ_G0033002.1 mouse_genomes_project 8 95894316 95918220 + MGP_CASTEiJ_P0090233 Mmp15 protein_coding protein_coding MGP_CASTEiJ_T0089332.1 MGP_CASTEiJ_G0032718.1 mouse_genomes_project 8 69835881 69895547 - Crtc1 protein_coding retained_intron MGP_CASTEiJ_T0089333.1 MGP_CASTEiJ_G0032718.1 mouse_genomes_project 8 69835881 69895547 - MGP_CASTEiJ_P0089333 Crtc1 protein_coding protein_coding MGP_CASTEiJ_T0089334.1 MGP_CASTEiJ_G0032718.1 mouse_genomes_project 8 69851285 69856392 - Crtc1 protein_coding retained_intron MGP_CASTEiJ_T0089335.1 MGP_CASTEiJ_G0032718.1 mouse_genomes_project 8 69858416 69895543 - Crtc1 protein_coding retained_intron MGP_CASTEiJ_T0089336.1 MGP_CASTEiJ_G0032718.1 mouse_genomes_project 8 69859692 69887328 - Crtc1 protein_coding processed_transcript MGP_CASTEiJ_T0088572.1 MGP_CASTEiJ_G0032496.1 mouse_genomes_project 8 22712134 22761958 - MGP_CASTEiJ_P0088572 Tacc1 protein_coding protein_coding MGP_CASTEiJ_T0088573.1 MGP_CASTEiJ_G0032496.1 mouse_genomes_project 8 22712134 22761958 - MGP_CASTEiJ_P0088573 Tacc1 protein_coding protein_coding MGP_CASTEiJ_T0088913.1 MGP_CASTEiJ_G0032599.1 mouse_genomes_project 8 44754984 44762277 + Cfap97 protein_coding processed_transcript MGP_CASTEiJ_T0088914.1 MGP_CASTEiJ_G0032599.1 mouse_genomes_project 8 44755007 44762183 + MGP_CASTEiJ_P0088914 Cfap97 protein_coding protein_coding MGP_CASTEiJ_T0088915.1 MGP_CASTEiJ_G0032599.1 mouse_genomes_project 8 44755325 44791811 + MGP_CASTEiJ_P0088915 Cfap97 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002258.1 MGP_CASTEiJ_G0002177.1 mouse_genomes_project 8 42697468 42698296 - TEC TEC MGP_CASTEiJ_T0091082.1 MGP_CASTEiJ_G0033275.1 mouse_genomes_project 8 126536796 126539756 - MGP_CASTEiJ_P0091082 Acta1 protein_coding protein_coding MGP_CASTEiJ_T0090858.1 MGP_CASTEiJ_G0033220.1 mouse_genomes_project 8 123617674 123636252 - MGP_CASTEiJ_P0090858 Mthfsd protein_coding protein_coding MGP_CASTEiJ_T0090859.1 MGP_CASTEiJ_G0033220.1 mouse_genomes_project 8 123621011 123627229 - Mthfsd protein_coding processed_transcript MGP_CASTEiJ_T0090860.1 MGP_CASTEiJ_G0033220.1 mouse_genomes_project 8 123623557 123636261 - MGP_CASTEiJ_P0090860 Mthfsd protein_coding protein_coding MGP_CASTEiJ_T0090861.1 MGP_CASTEiJ_G0033220.1 mouse_genomes_project 8 123623559 123636229 - Mthfsd protein_coding processed_transcript MGP_CASTEiJ_T0090862.1 MGP_CASTEiJ_G0033220.1 mouse_genomes_project 8 123623561 123636244 - MGP_CASTEiJ_P0090862 Mthfsd protein_coding protein_coding MGP_CASTEiJ_T0090863.1 MGP_CASTEiJ_G0033220.1 mouse_genomes_project 8 123623771 123627630 - Mthfsd protein_coding retained_intron MGP_CASTEiJ_T0090864.1 MGP_CASTEiJ_G0033220.1 mouse_genomes_project 8 123623855 123636326 - MGP_CASTEiJ_P0090864 Mthfsd protein_coding protein_coding MGP_CASTEiJ_T0090865.1 MGP_CASTEiJ_G0033220.1 mouse_genomes_project 8 123623941 123636313 - Mthfsd protein_coding retained_intron MGP_CASTEiJ_T0090866.1 MGP_CASTEiJ_G0033220.1 mouse_genomes_project 8 123624712 123636222 - Mthfsd protein_coding processed_transcript MGP_CASTEiJ_T0090867.1 MGP_CASTEiJ_G0033220.1 mouse_genomes_project 8 123625012 123633575 - Mthfsd protein_coding processed_transcript MGP_CASTEiJ_T0090868.1 MGP_CASTEiJ_G0033220.1 mouse_genomes_project 8 123627219 123636232 - MGP_CASTEiJ_P0090868 Mthfsd protein_coding protein_coding MGP_CASTEiJ_T0090869.1 MGP_CASTEiJ_G0033220.1 mouse_genomes_project 8 123628763 123635586 - Mthfsd protein_coding retained_intron MGP_CASTEiJ_T0090870.1 MGP_CASTEiJ_G0033220.1 mouse_genomes_project 8 123629905 123633632 - Mthfsd protein_coding processed_transcript MGP_CASTEiJ_T0090871.1 MGP_CASTEiJ_G0033220.1 mouse_genomes_project 8 123630152 123636247 - Mthfsd protein_coding processed_transcript MGP_CASTEiJ_T0090872.1 MGP_CASTEiJ_G0033220.1 mouse_genomes_project 8 123630528 123636277 - Mthfsd protein_coding processed_transcript MGP_CASTEiJ_T0088655.1 MGP_CASTEiJ_G0032519.1 mouse_genomes_project 8 24870503 24911987 - MGP_CASTEiJ_P0088655 Rab11fip1 protein_coding protein_coding MGP_CASTEiJ_T0088656.1 MGP_CASTEiJ_G0032519.1 mouse_genomes_project 8 24870503 24911987 - MGP_CASTEiJ_P0088656 Rab11fip1 protein_coding protein_coding MGP_CASTEiJ_T0088686.1 MGP_CASTEiJ_G0032536.1 mouse_genomes_project 8 31327348 31359338 + MGP_CASTEiJ_P0088686 Purg protein_coding protein_coding MGP_CASTEiJ_T0088687.1 MGP_CASTEiJ_G0032536.1 mouse_genomes_project 8 31327348 31328555 + MGP_CASTEiJ_P0088687 Purg protein_coding protein_coding MGP_CASTEiJ_T0090149.1 MGP_CASTEiJ_G0032977.1 mouse_genomes_project 8 94896521 94905502 + MGP_CASTEiJ_P0090149 Herpud1 protein_coding protein_coding MGP_CASTEiJ_T0090150.1 MGP_CASTEiJ_G0032977.1 mouse_genomes_project 8 94896578 94905483 + MGP_CASTEiJ_P0090150 Herpud1 protein_coding protein_coding MGP_CASTEiJ_T0090151.1 MGP_CASTEiJ_G0032977.1 mouse_genomes_project 8 94897636 94902548 + Herpud1 protein_coding processed_transcript MGP_CASTEiJ_T0090152.1 MGP_CASTEiJ_G0032977.1 mouse_genomes_project 8 94897682 94902388 + Herpud1 protein_coding processed_transcript MGP_CASTEiJ_T0090153.1 MGP_CASTEiJ_G0032977.1 mouse_genomes_project 8 94903656 94905034 + Herpud1 protein_coding retained_intron MGP_CASTEiJ_T0090207.1 MGP_CASTEiJ_G0032993.1 mouse_genomes_project 8 95513298 95551659 + MGP_CASTEiJ_P0090207 Adgrg1 protein_coding protein_coding MGP_CASTEiJ_T0090208.1 MGP_CASTEiJ_G0032993.1 mouse_genomes_project 8 95520353 95551659 + MGP_CASTEiJ_P0090208 Adgrg1 protein_coding protein_coding MGP_CASTEiJ_T0090317.1 MGP_CASTEiJ_G0033036.1 mouse_genomes_project 8 106118599 106126383 + MGP_CASTEiJ_P0090317 Ces2g protein_coding protein_coding MGP_CASTEiJ_T0090235.1 MGP_CASTEiJ_G0033004.1 mouse_genomes_project 8 95986122 96030271 - MGP_CASTEiJ_P0090235 Csnk2a2 protein_coding protein_coding MGP_CASTEiJ_T0090142.1 MGP_CASTEiJ_G0032971.1 mouse_genomes_project 8 94627257 94629088 + MGP_CASTEiJ_P0090142 Mt4 protein_coding protein_coding MGP_CASTEiJ_T0088905.1 MGP_CASTEiJ_G0032598.1 mouse_genomes_project 8 44615275 44743408 - MGP_CASTEiJ_P0088905 Snx25 protein_coding protein_coding MGP_CASTEiJ_T0088906.1 MGP_CASTEiJ_G0032598.1 mouse_genomes_project 8 44615290 44705395 - Snx25 protein_coding retained_intron MGP_CASTEiJ_T0088907.1 MGP_CASTEiJ_G0032598.1 mouse_genomes_project 8 44615471 44665651 - MGP_CASTEiJ_P0088907 Snx25 protein_coding protein_coding MGP_CASTEiJ_T0088908.1 MGP_CASTEiJ_G0032598.1 mouse_genomes_project 8 44615686 44743478 - MGP_CASTEiJ_P0088908 Snx25 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088909.1 MGP_CASTEiJ_G0032598.1 mouse_genomes_project 8 44631325 44638399 - Snx25 protein_coding processed_transcript MGP_CASTEiJ_T0088910.1 MGP_CASTEiJ_G0032598.1 mouse_genomes_project 8 44638022 44713029 - MGP_CASTEiJ_P0088910 Snx25 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088911.1 MGP_CASTEiJ_G0032598.1 mouse_genomes_project 8 44638066 44675019 - Snx25 protein_coding processed_transcript MGP_CASTEiJ_T0088912.1 MGP_CASTEiJ_G0032598.1 mouse_genomes_project 8 44665208 44690689 - Snx25 protein_coding retained_intron MGP_CASTEiJ_T0090019.1 MGP_CASTEiJ_G0032933.1 mouse_genomes_project 8 88240596 88278992 + MGP_CASTEiJ_P0090019 Heatr3 protein_coding protein_coding MGP_CASTEiJ_T0090020.1 MGP_CASTEiJ_G0032933.1 mouse_genomes_project 8 88264167 88265854 + Heatr3 protein_coding retained_intron MGP_CASTEiJ_T0090021.1 MGP_CASTEiJ_G0032933.1 mouse_genomes_project 8 88269574 88280078 + Heatr3 protein_coding retained_intron MGP_CASTEiJ_T0090022.1 MGP_CASTEiJ_G0032933.1 mouse_genomes_project 8 88272533 88275056 + Heatr3 protein_coding retained_intron MGP_CASTEiJ_T0090740.1 MGP_CASTEiJ_G0033187.1 mouse_genomes_project 8 119900252 119910460 - MGP_CASTEiJ_P0090740 Sdr42e1 protein_coding protein_coding MGP_CASTEiJ_T0090741.1 MGP_CASTEiJ_G0033187.1 mouse_genomes_project 8 119900255 119912617 - MGP_CASTEiJ_P0090741 Sdr42e1 protein_coding protein_coding MGP_CASTEiJ_T0090742.1 MGP_CASTEiJ_G0033187.1 mouse_genomes_project 8 119902189 119912617 - MGP_CASTEiJ_P0090742 Sdr42e1 protein_coding protein_coding MGP_CASTEiJ_T0005267.1 MGP_CASTEiJ_G0004475.1 mouse_genomes_project 8 129400235 129425091 + Gm26759 antisense antisense MGP_CASTEiJ_T0089351.1 MGP_CASTEiJ_G0032723.1 mouse_genomes_project 8 69966617 69968133 - MGP_CASTEiJ_P0089351 protein_coding protein_coding MGP_CASTEiJ_T0089657.1 MGP_CASTEiJ_G0032827.1 mouse_genomes_project 8 79001482 79029908 - MGP_CASTEiJ_P0089657 Mmaa protein_coding protein_coding MGP_CASTEiJ_T0088632.1 MGP_CASTEiJ_G0032512.1 mouse_genomes_project 8 23759254 23784140 + MGP_CASTEiJ_P0088632 protein_coding protein_coding MGP_CASTEiJ_T0088633.1 MGP_CASTEiJ_G0032512.1 mouse_genomes_project 8 23759264 23781611 + MGP_CASTEiJ_P0088633 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088634.1 MGP_CASTEiJ_G0032512.1 mouse_genomes_project 8 23759267 23781410 + MGP_CASTEiJ_P0088634 protein_coding protein_coding MGP_CASTEiJ_T0088635.1 MGP_CASTEiJ_G0032512.1 mouse_genomes_project 8 23759272 23768781 + MGP_CASTEiJ_P0088635 protein_coding protein_coding MGP_CASTEiJ_T0088636.1 MGP_CASTEiJ_G0032512.1 mouse_genomes_project 8 23759360 23769172 + MGP_CASTEiJ_P0088636 protein_coding protein_coding MGP_CASTEiJ_T0088637.1 MGP_CASTEiJ_G0032512.1 mouse_genomes_project 8 23759450 23782943 + MGP_CASTEiJ_P0088637 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088638.1 MGP_CASTEiJ_G0032512.1 mouse_genomes_project 8 23759548 23768781 + MGP_CASTEiJ_P0088638 protein_coding protein_coding MGP_CASTEiJ_T0088639.1 MGP_CASTEiJ_G0032512.1 mouse_genomes_project 8 23760364 23765944 + MGP_CASTEiJ_P0088639 protein_coding protein_coding MGP_CASTEiJ_T0088640.1 MGP_CASTEiJ_G0032512.1 mouse_genomes_project 8 23763568 23781364 + MGP_CASTEiJ_P0088640 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0008836.1 MGP_CASTEiJ_G0007123.1 mouse_genomes_project 8 9404462 9404864 + Gm29175 lincRNA lincRNA MGP_CASTEiJ_T0005243.1 MGP_CASTEiJ_G0004453.1 mouse_genomes_project 8 108366456 108368009 - Gm16208 antisense antisense MGP_CASTEiJ_T0017739.1 MGP_CASTEiJ_G0015039.1 mouse_genomes_project 8 100099402 100207450 - Gm15680 processed_transcript processed_transcript MGP_CASTEiJ_T0090202.1 MGP_CASTEiJ_G0032992.1 mouse_genomes_project 8 95453533 95467091 + MGP_CASTEiJ_P0090202 Adgrg5 protein_coding protein_coding MGP_CASTEiJ_T0090203.1 MGP_CASTEiJ_G0032992.1 mouse_genomes_project 8 95453533 95477527 + MGP_CASTEiJ_P0090203 Adgrg5 protein_coding protein_coding MGP_CASTEiJ_T0090204.1 MGP_CASTEiJ_G0032992.1 mouse_genomes_project 8 95453533 95477537 + MGP_CASTEiJ_P0090204 Adgrg5 protein_coding protein_coding MGP_CASTEiJ_T0090205.1 MGP_CASTEiJ_G0032992.1 mouse_genomes_project 8 95453538 95477527 + MGP_CASTEiJ_P0090205 Adgrg5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090206.1 MGP_CASTEiJ_G0032992.1 mouse_genomes_project 8 95466741 95467659 + Adgrg5 protein_coding processed_transcript MGP_CASTEiJ_T0015405.1 MGP_CASTEiJ_G0013568.1 mouse_genomes_project 8 108376313 108376882 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101326.1 MGP_CASTEiJ_G0038239.1 mouse_genomes_project 8 84380010 84380143 - Gm23626 snoRNA snoRNA MGP_CASTEiJ_T0005242.1 MGP_CASTEiJ_G0004452.1 mouse_genomes_project 8 107194357 107207636 + Gm16156 antisense antisense MGP_CASTEiJ_T0005232.1 MGP_CASTEiJ_G0004443.1 mouse_genomes_project 8 80304300 80306926 - 4930505O20Rik antisense antisense MGP_CASTEiJ_T0088397.1 MGP_CASTEiJ_G0032418.1 mouse_genomes_project 8 13201942 14916586 - MGP_CASTEiJ_P0088397 Csmd1 protein_coding protein_coding MGP_CASTEiJ_T0088398.1 MGP_CASTEiJ_G0032418.1 mouse_genomes_project 8 13201950 13293756 - Csmd1 protein_coding retained_intron MGP_CASTEiJ_T0088399.1 MGP_CASTEiJ_G0032418.1 mouse_genomes_project 8 13396891 14916586 - Csmd1 protein_coding processed_transcript MGP_CASTEiJ_T0088400.1 MGP_CASTEiJ_G0032418.1 mouse_genomes_project 8 13607242 14916586 - Csmd1 protein_coding retained_intron MGP_CASTEiJ_T0088401.1 MGP_CASTEiJ_G0032418.1 mouse_genomes_project 8 13669523 14916891 - Csmd1 protein_coding processed_transcript MGP_CASTEiJ_T0088402.1 MGP_CASTEiJ_G0032418.1 mouse_genomes_project 8 14584211 14916690 - Csmd1 protein_coding retained_intron MGP_CASTEiJ_T0088403.1 MGP_CASTEiJ_G0032418.1 mouse_genomes_project 8 14755118 14916682 - Csmd1 protein_coding processed_transcript MGP_CASTEiJ_T0089750.1 MGP_CASTEiJ_G0032858.1 mouse_genomes_project 8 83904510 83927858 - MGP_CASTEiJ_P0089750 Gm10644 protein_coding protein_coding MGP_CASTEiJ_T0089143.1 MGP_CASTEiJ_G0032667.1 mouse_genomes_project 8 65951984 65966088 + MGP_CASTEiJ_P0089143 Npy1r protein_coding protein_coding MGP_CASTEiJ_T0091017.1 MGP_CASTEiJ_G0033260.1 mouse_genomes_project 8 125893488 125897438 - MGP_CASTEiJ_P0091017 Spata2l protein_coding protein_coding MGP_CASTEiJ_T0091018.1 MGP_CASTEiJ_G0033260.1 mouse_genomes_project 8 125893491 125897441 - MGP_CASTEiJ_P0091018 Spata2l protein_coding protein_coding MGP_CASTEiJ_T0002254.1 MGP_CASTEiJ_G0002173.1 mouse_genomes_project 8 10462828 10463909 - TEC TEC MGP_CASTEiJ_T0010658.1 MGP_CASTEiJ_G0008846.1 mouse_genomes_project 8 66927891 66927984 - Gm44391 miRNA miRNA MGP_CASTEiJ_T0090497.1 MGP_CASTEiJ_G0033109.1 mouse_genomes_project 8 108407988 108438350 - MGP_CASTEiJ_P0090497 Terf2 protein_coding protein_coding MGP_CASTEiJ_T0090498.1 MGP_CASTEiJ_G0033109.1 mouse_genomes_project 8 108407990 108438350 - MGP_CASTEiJ_P0090498 Terf2 protein_coding protein_coding MGP_CASTEiJ_T0090499.1 MGP_CASTEiJ_G0033109.1 mouse_genomes_project 8 108407990 108437995 - MGP_CASTEiJ_P0090499 Terf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090500.1 MGP_CASTEiJ_G0033109.1 mouse_genomes_project 8 108408519 108438319 - MGP_CASTEiJ_P0090500 Terf2 protein_coding protein_coding MGP_CASTEiJ_T0090501.1 MGP_CASTEiJ_G0033109.1 mouse_genomes_project 8 108414129 108438352 - MGP_CASTEiJ_P0090501 Terf2 protein_coding protein_coding MGP_CASTEiJ_T0090502.1 MGP_CASTEiJ_G0033109.1 mouse_genomes_project 8 108414931 108418493 - Terf2 protein_coding retained_intron MGP_CASTEiJ_T0090503.1 MGP_CASTEiJ_G0033109.1 mouse_genomes_project 8 108418045 108420043 - Terf2 protein_coding retained_intron MGP_CASTEiJ_T0090504.1 MGP_CASTEiJ_G0033109.1 mouse_genomes_project 8 108418054 108421817 - Terf2 protein_coding retained_intron MGP_CASTEiJ_T0005222.1 MGP_CASTEiJ_G0004435.1 mouse_genomes_project 8 60949689 61020833 + 4930512H18Rik antisense antisense MGP_CASTEiJ_T0090413.1 MGP_CASTEiJ_G0033074.1 mouse_genomes_project 8 107107815 107109663 + MGP_CASTEiJ_P0090413 Thap11 protein_coding protein_coding MGP_CASTEiJ_T0088093.1 MGP_CASTEiJ_G0032331.1 mouse_genomes_project 8 574977 577113 - Pcp2 protein_coding retained_intron MGP_CASTEiJ_T0088094.1 MGP_CASTEiJ_G0032331.1 mouse_genomes_project 8 574977 577113 - MGP_CASTEiJ_P0088094 Pcp2 protein_coding protein_coding MGP_CASTEiJ_T0088095.1 MGP_CASTEiJ_G0032331.1 mouse_genomes_project 8 574983 577113 - Pcp2 protein_coding retained_intron MGP_CASTEiJ_T0088096.1 MGP_CASTEiJ_G0032331.1 mouse_genomes_project 8 574983 576570 - MGP_CASTEiJ_P0088096 Pcp2 protein_coding protein_coding MGP_CASTEiJ_T0088097.1 MGP_CASTEiJ_G0032331.1 mouse_genomes_project 8 574983 576850 - MGP_CASTEiJ_P0088097 Pcp2 protein_coding protein_coding MGP_CASTEiJ_T0088098.1 MGP_CASTEiJ_G0032331.1 mouse_genomes_project 8 574983 576617 - MGP_CASTEiJ_P0088098 Pcp2 protein_coding protein_coding MGP_CASTEiJ_T0088099.1 MGP_CASTEiJ_G0032331.1 mouse_genomes_project 8 574986 577093 - Pcp2 protein_coding processed_transcript MGP_CASTEiJ_T0090248.1 MGP_CASTEiJ_G0033009.1 mouse_genomes_project 8 96268244 96269111 + Setd6 protein_coding processed_transcript MGP_CASTEiJ_T0090249.1 MGP_CASTEiJ_G0033009.1 mouse_genomes_project 8 96268261 96271311 + MGP_CASTEiJ_P0090249 Setd6 protein_coding protein_coding MGP_CASTEiJ_T0090250.1 MGP_CASTEiJ_G0033009.1 mouse_genomes_project 8 96268491 96269567 + Setd6 protein_coding processed_transcript MGP_CASTEiJ_T0090251.1 MGP_CASTEiJ_G0033009.1 mouse_genomes_project 8 96268940 96270820 + Setd6 protein_coding processed_transcript MGP_CASTEiJ_T0090252.1 MGP_CASTEiJ_G0033009.1 mouse_genomes_project 8 96268949 96270367 + Setd6 protein_coding processed_transcript MGP_CASTEiJ_T0090253.1 MGP_CASTEiJ_G0033009.1 mouse_genomes_project 8 96269338 96271172 + Setd6 protein_coding processed_transcript MGP_CASTEiJ_T0090788.1 MGP_CASTEiJ_G0033206.1 mouse_genomes_project 8 122252197 122266858 + MGP_CASTEiJ_P0090788 Klhl36 protein_coding protein_coding MGP_CASTEiJ_T0090131.1 MGP_CASTEiJ_G0032968.1 mouse_genomes_project 8 94483313 94502537 - MGP_CASTEiJ_P0090131 Nudt21 protein_coding protein_coding MGP_CASTEiJ_T0088753.1 MGP_CASTEiJ_G0032560.1 mouse_genomes_project 8 34723112 34898848 - MGP_CASTEiJ_P0088753 Dlc1 protein_coding protein_coding MGP_CASTEiJ_T0088754.1 MGP_CASTEiJ_G0032560.1 mouse_genomes_project 8 34723112 34773813 - MGP_CASTEiJ_P0088754 Dlc1 protein_coding protein_coding MGP_CASTEiJ_T0088755.1 MGP_CASTEiJ_G0032560.1 mouse_genomes_project 8 34725592 35120870 - MGP_CASTEiJ_P0088755 Dlc1 protein_coding protein_coding MGP_CASTEiJ_T0088756.1 MGP_CASTEiJ_G0032560.1 mouse_genomes_project 8 34726469 34773538 - MGP_CASTEiJ_P0088756 Dlc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088757.1 MGP_CASTEiJ_G0032560.1 mouse_genomes_project 8 34727488 34732606 - Dlc1 protein_coding retained_intron MGP_CASTEiJ_T0088758.1 MGP_CASTEiJ_G0032560.1 mouse_genomes_project 8 34748418 34773744 - Dlc1 protein_coding retained_intron MGP_CASTEiJ_T0088759.1 MGP_CASTEiJ_G0032560.1 mouse_genomes_project 8 35008235 35120785 - Dlc1 protein_coding retained_intron MGP_CASTEiJ_T0088760.1 MGP_CASTEiJ_G0032560.1 mouse_genomes_project 8 35017221 35120850 - Dlc1 protein_coding retained_intron MGP_CASTEiJ_T0088761.1 MGP_CASTEiJ_G0032560.1 mouse_genomes_project 8 35104050 35120864 - Dlc1 protein_coding retained_intron MGP_CASTEiJ_T0088762.1 MGP_CASTEiJ_G0032560.1 mouse_genomes_project 8 35107019 35121571 - MGP_CASTEiJ_P0088762 Dlc1 protein_coding protein_coding MGP_CASTEiJ_T0089239.1 MGP_CASTEiJ_G0032697.1 mouse_genomes_project 8 69315804 69317139 + MGP_CASTEiJ_P0089239 Tssk6 protein_coding protein_coding MGP_CASTEiJ_T0088838.1 MGP_CASTEiJ_G0032584.1 mouse_genomes_project 8 43441836 43563340 + MGP_CASTEiJ_P0088838 Fat1 protein_coding protein_coding MGP_CASTEiJ_T0088839.1 MGP_CASTEiJ_G0032584.1 mouse_genomes_project 8 43444653 43563336 + MGP_CASTEiJ_P0088839 Fat1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088840.1 MGP_CASTEiJ_G0032584.1 mouse_genomes_project 8 43456469 43563340 + MGP_CASTEiJ_P0088840 Fat1 protein_coding protein_coding MGP_CASTEiJ_T0088841.1 MGP_CASTEiJ_G0032584.1 mouse_genomes_project 8 43540295 43563328 + MGP_CASTEiJ_P0088841 Fat1 protein_coding protein_coding MGP_CASTEiJ_T0088842.1 MGP_CASTEiJ_G0032584.1 mouse_genomes_project 8 43555619 43561924 + MGP_CASTEiJ_P0088842 Fat1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088843.1 MGP_CASTEiJ_G0032584.1 mouse_genomes_project 8 43555619 43561924 + MGP_CASTEiJ_P0088843 Fat1 protein_coding protein_coding MGP_CASTEiJ_T0088844.1 MGP_CASTEiJ_G0032584.1 mouse_genomes_project 8 43556221 43561593 + Fat1 protein_coding retained_intron MGP_CASTEiJ_T0088176.1 MGP_CASTEiJ_G0032352.1 mouse_genomes_project 8 1189860 1226969 + MGP_CASTEiJ_P0088176 Ccl25 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088177.1 MGP_CASTEiJ_G0032352.1 mouse_genomes_project 8 1189877 1214269 + MGP_CASTEiJ_P0088177 Ccl25 protein_coding non_stop_decay MGP_CASTEiJ_T0088178.1 MGP_CASTEiJ_G0032352.1 mouse_genomes_project 8 1189880 1214269 + MGP_CASTEiJ_P0088178 Ccl25 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088179.1 MGP_CASTEiJ_G0032352.1 mouse_genomes_project 8 1189883 1226624 + MGP_CASTEiJ_P0088179 Ccl25 protein_coding protein_coding MGP_CASTEiJ_T0088180.1 MGP_CASTEiJ_G0032352.1 mouse_genomes_project 8 1189886 1221131 + MGP_CASTEiJ_P0088180 Ccl25 protein_coding protein_coding MGP_CASTEiJ_T0088181.1 MGP_CASTEiJ_G0032352.1 mouse_genomes_project 8 1189891 1197959 + Ccl25 protein_coding processed_transcript MGP_CASTEiJ_T0088182.1 MGP_CASTEiJ_G0032352.1 mouse_genomes_project 8 1215076 1226991 + MGP_CASTEiJ_P0088182 Ccl25 protein_coding protein_coding MGP_CASTEiJ_T0088183.1 MGP_CASTEiJ_G0032352.1 mouse_genomes_project 8 1215076 1224960 + MGP_CASTEiJ_P0088183 Ccl25 protein_coding protein_coding MGP_CASTEiJ_T0090569.1 MGP_CASTEiJ_G0033130.1 mouse_genomes_project 8 111632480 111642835 + MGP_CASTEiJ_P0090569 Zfp612 protein_coding protein_coding MGP_CASTEiJ_T0098410.1 MGP_CASTEiJ_G0035341.1 mouse_genomes_project 8 123657376 123658466 + pseudogene pseudogene MGP_CASTEiJ_T0088851.1 MGP_CASTEiJ_G0032589.1 mouse_genomes_project 8 43867953 43890320 - MGP_CASTEiJ_P0088851 Fam149a protein_coding protein_coding MGP_CASTEiJ_T0088852.1 MGP_CASTEiJ_G0032589.1 mouse_genomes_project 8 43867961 43923026 - MGP_CASTEiJ_P0088852 Fam149a protein_coding protein_coding MGP_CASTEiJ_T0088853.1 MGP_CASTEiJ_G0032589.1 mouse_genomes_project 8 43869999 43890217 - MGP_CASTEiJ_P0088853 Fam149a protein_coding protein_coding MGP_CASTEiJ_T0090343.1 MGP_CASTEiJ_G0033044.1 mouse_genomes_project 8 106471449 106476078 + MGP_CASTEiJ_P0090343 Fbxl8 protein_coding protein_coding MGP_CASTEiJ_T0090344.1 MGP_CASTEiJ_G0033044.1 mouse_genomes_project 8 106471483 106475922 + MGP_CASTEiJ_P0090344 Fbxl8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0005184.1 MGP_CASTEiJ_G0004406.1 mouse_genomes_project 8 666788 697851 + Gm16553 antisense antisense MGP_CASTEiJ_T0089759.1 MGP_CASTEiJ_G0032862.1 mouse_genomes_project 8 83976429 83979731 + MGP_CASTEiJ_P0089759 1700067K01Rik protein_coding protein_coding MGP_CASTEiJ_T0089760.1 MGP_CASTEiJ_G0032862.1 mouse_genomes_project 8 83976631 83979630 + MGP_CASTEiJ_P0089760 1700067K01Rik protein_coding protein_coding MGP_CASTEiJ_T0089761.1 MGP_CASTEiJ_G0032862.1 mouse_genomes_project 8 83976631 83979624 + MGP_CASTEiJ_P0089761 1700067K01Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089762.1 MGP_CASTEiJ_G0032862.1 mouse_genomes_project 8 83977264 83978244 + 1700067K01Rik protein_coding retained_intron MGP_CASTEiJ_T0090974.1 MGP_CASTEiJ_G0033246.1 mouse_genomes_project 8 125248500 125254656 + MGP_CASTEiJ_P0090974 Trappc2l protein_coding protein_coding MGP_CASTEiJ_T0090457.1 MGP_CASTEiJ_G0033089.1 mouse_genomes_project 8 107433206 107447583 + MGP_CASTEiJ_P0090457 Pla2g15 protein_coding protein_coding MGP_CASTEiJ_T0017693.1 MGP_CASTEiJ_G0015020.1 mouse_genomes_project 8 1021203 1069678 - 4932443L11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017694.1 MGP_CASTEiJ_G0015020.1 mouse_genomes_project 8 1036850 1069087 - 4932443L11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0090550.1 MGP_CASTEiJ_G0033123.1 mouse_genomes_project 8 111230811 111252391 + MGP_CASTEiJ_P0090550 Zfp821 protein_coding unknown_likely_coding MGP_CASTEiJ_T0008889.1 MGP_CASTEiJ_G0007166.1 mouse_genomes_project 8 84188227 84194000 - Gm26887 lincRNA lincRNA MGP_CASTEiJ_T0005187.1 MGP_CASTEiJ_G0004409.1 mouse_genomes_project 8 8942554 8943978 - Gm15875 antisense antisense MGP_CASTEiJ_T0089709.1 MGP_CASTEiJ_G0032847.1 mouse_genomes_project 8 83320805 83358142 + MGP_CASTEiJ_P0089709 Clgn protein_coding protein_coding MGP_CASTEiJ_T0089710.1 MGP_CASTEiJ_G0032847.1 mouse_genomes_project 8 83320816 83356418 + MGP_CASTEiJ_P0089710 Clgn protein_coding protein_coding MGP_CASTEiJ_T0089910.1 MGP_CASTEiJ_G0032899.1 mouse_genomes_project 8 85018859 85024128 + MGP_CASTEiJ_P0089910 Prdx2 protein_coding protein_coding MGP_CASTEiJ_T0089911.1 MGP_CASTEiJ_G0032899.1 mouse_genomes_project 8 85018883 85024128 + MGP_CASTEiJ_P0089911 Prdx2 protein_coding protein_coding MGP_CASTEiJ_T0089912.1 MGP_CASTEiJ_G0032899.1 mouse_genomes_project 8 85018967 85021383 + Prdx2 protein_coding retained_intron MGP_CASTEiJ_T0089913.1 MGP_CASTEiJ_G0032899.1 mouse_genomes_project 8 85018967 85020404 + Prdx2 protein_coding retained_intron MGP_CASTEiJ_T0089914.1 MGP_CASTEiJ_G0032899.1 mouse_genomes_project 8 85019040 85024128 + MGP_CASTEiJ_P0089914 Prdx2 protein_coding protein_coding MGP_CASTEiJ_T0089915.1 MGP_CASTEiJ_G0032899.1 mouse_genomes_project 8 85019130 85020902 + MGP_CASTEiJ_P0089915 Prdx2 protein_coding protein_coding MGP_CASTEiJ_T0089916.1 MGP_CASTEiJ_G0032899.1 mouse_genomes_project 8 85019512 85023948 + MGP_CASTEiJ_P0089916 Prdx2 protein_coding protein_coding MGP_CASTEiJ_T0089917.1 MGP_CASTEiJ_G0032899.1 mouse_genomes_project 8 85020734 85023596 + Prdx2 protein_coding retained_intron MGP_CASTEiJ_T0098403.1 MGP_CASTEiJ_G0035334.1 mouse_genomes_project 8 23204663 23205702 + pseudogene pseudogene MGP_CASTEiJ_T0005203.1 MGP_CASTEiJ_G0004420.1 mouse_genomes_project 8 20270912 20274694 + 1700041G16Rik antisense antisense MGP_CASTEiJ_T0005204.1 MGP_CASTEiJ_G0004420.1 mouse_genomes_project 8 20273432 20273890 + 1700041G16Rik antisense antisense MGP_CASTEiJ_T0015374.1 MGP_CASTEiJ_G0013537.1 mouse_genomes_project 8 68117163 68117788 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008919.1 MGP_CASTEiJ_G0007187.1 mouse_genomes_project 8 92381313 92395240 + Gm28516 lincRNA lincRNA MGP_CASTEiJ_T0090114.1 MGP_CASTEiJ_G0032965.1 mouse_genomes_project 8 93938485 93973000 - MGP_CASTEiJ_P0090114 Ces5a protein_coding protein_coding MGP_CASTEiJ_T0098406.1 MGP_CASTEiJ_G0035337.1 mouse_genomes_project 8 89372788 89373378 - pseudogene pseudogene MGP_CASTEiJ_T0091136.1 MGP_CASTEiJ_G0033295.1 mouse_genomes_project 8 127730726 127745909 + MGP_CASTEiJ_P0091136 Tsnax protein_coding unknown_likely_coding MGP_CASTEiJ_T0101332.1 MGP_CASTEiJ_G0038245.1 mouse_genomes_project 8 96298310 96298446 - Gm26493 snoRNA snoRNA MGP_CASTEiJ_T0015342.1 MGP_CASTEiJ_G0013505.1 mouse_genomes_project 8 3877483 3878323 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0089898.1 MGP_CASTEiJ_G0032897.1 mouse_genomes_project 8 84996550 85006023 + MGP_CASTEiJ_P0089898 Rtbdn protein_coding protein_coding MGP_CASTEiJ_T0089899.1 MGP_CASTEiJ_G0032897.1 mouse_genomes_project 8 84996550 85006023 + MGP_CASTEiJ_P0089899 Rtbdn protein_coding protein_coding MGP_CASTEiJ_T0089900.1 MGP_CASTEiJ_G0032897.1 mouse_genomes_project 8 84999280 85006023 + MGP_CASTEiJ_P0089900 Rtbdn protein_coding protein_coding MGP_CASTEiJ_T0089901.1 MGP_CASTEiJ_G0032897.1 mouse_genomes_project 8 85000601 85005931 + MGP_CASTEiJ_P0089901 Rtbdn protein_coding protein_coding MGP_CASTEiJ_T0102605.1 MGP_CASTEiJ_G0039329.1 mouse_genomes_project 8 16819045 16849311 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0090549.1 MGP_CASTEiJ_G0033122.1 mouse_genomes_project 8 111190956 111215233 - MGP_CASTEiJ_P0090549 Ist1 protein_coding protein_coding MGP_CASTEiJ_T0100061.1 MGP_CASTEiJ_G0036974.1 mouse_genomes_project 8 41153116 41153222 + Gm26181 snRNA snRNA MGP_CASTEiJ_T0089263.1 MGP_CASTEiJ_G0032707.1 mouse_genomes_project 8 69591779 69604869 + MGP_CASTEiJ_P0089263 protein_coding protein_coding MGP_CASTEiJ_T0089264.1 MGP_CASTEiJ_G0032707.1 mouse_genomes_project 8 69591779 69604869 + MGP_CASTEiJ_P0089264 protein_coding protein_coding MGP_CASTEiJ_T0089265.1 MGP_CASTEiJ_G0032707.1 mouse_genomes_project 8 69591782 69604868 + MGP_CASTEiJ_P0089265 protein_coding protein_coding MGP_CASTEiJ_T0089266.1 MGP_CASTEiJ_G0032707.1 mouse_genomes_project 8 69591782 69604868 + MGP_CASTEiJ_P0089266 protein_coding protein_coding MGP_CASTEiJ_T0089267.1 MGP_CASTEiJ_G0032708.1 mouse_genomes_project 8 69609779 69619826 + Tmem161a protein_coding processed_transcript MGP_CASTEiJ_T0089268.1 MGP_CASTEiJ_G0032708.1 mouse_genomes_project 8 69609828 69622569 + MGP_CASTEiJ_P0089268 Tmem161a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089269.1 MGP_CASTEiJ_G0032708.1 mouse_genomes_project 8 69609836 69621777 + MGP_CASTEiJ_P0089269 Tmem161a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089270.1 MGP_CASTEiJ_G0032708.1 mouse_genomes_project 8 69609839 69616061 + Tmem161a protein_coding retained_intron MGP_CASTEiJ_T0089271.1 MGP_CASTEiJ_G0032708.1 mouse_genomes_project 8 69609839 69616334 + Tmem161a protein_coding processed_transcript MGP_CASTEiJ_T0089272.1 MGP_CASTEiJ_G0032708.1 mouse_genomes_project 8 69609842 69619634 + MGP_CASTEiJ_P0089272 Tmem161a protein_coding protein_coding MGP_CASTEiJ_T0089273.1 MGP_CASTEiJ_G0032708.1 mouse_genomes_project 8 69609861 69622558 + MGP_CASTEiJ_P0089273 Tmem161a protein_coding protein_coding MGP_CASTEiJ_T0089274.1 MGP_CASTEiJ_G0032708.1 mouse_genomes_project 8 69615750 69616467 + Tmem161a protein_coding retained_intron MGP_CASTEiJ_T0089275.1 MGP_CASTEiJ_G0032708.1 mouse_genomes_project 8 69616145 69617772 + Tmem161a protein_coding processed_transcript MGP_CASTEiJ_T0089276.1 MGP_CASTEiJ_G0032708.1 mouse_genomes_project 8 69616395 69620108 + MGP_CASTEiJ_P0089276 Tmem161a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089277.1 MGP_CASTEiJ_G0032708.1 mouse_genomes_project 8 69617614 69620209 + Tmem161a protein_coding retained_intron MGP_CASTEiJ_T0089278.1 MGP_CASTEiJ_G0032708.1 mouse_genomes_project 8 69619434 69620928 + Tmem161a protein_coding retained_intron MGP_CASTEiJ_T0102608.1 MGP_CASTEiJ_G0039332.1 mouse_genomes_project 8 67932481 67932781 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0089778.1 MGP_CASTEiJ_G0032871.1 mouse_genomes_project 8 84112521 84119042 + MGP_CASTEiJ_P0089778 Podnl1 protein_coding protein_coding MGP_CASTEiJ_T0089779.1 MGP_CASTEiJ_G0032871.1 mouse_genomes_project 8 84114350 84119031 + Podnl1 protein_coding retained_intron MGP_CASTEiJ_T0090692.1 MGP_CASTEiJ_G0033169.1 mouse_genomes_project 8 115543733 115704640 - MGP_CASTEiJ_P0090692 Adamts18 protein_coding protein_coding MGP_CASTEiJ_T0100055.1 MGP_CASTEiJ_G0036968.1 mouse_genomes_project 8 20287634 20287746 - Gm24735 snRNA snRNA MGP_CASTEiJ_T0101341.1 MGP_CASTEiJ_G0038254.1 mouse_genomes_project 8 113115702 113115834 + Gm24793 snoRNA snoRNA MGP_CASTEiJ_T0088447.1 MGP_CASTEiJ_G0032450.1 mouse_genomes_project 8 19289517 19292504 + MGP_CASTEiJ_P0088447 Defb10 protein_coding protein_coding MGP_CASTEiJ_T0091167.1 MGP_CASTEiJ_G0033303.1 mouse_genomes_project 8 129101167 129205704 + MGP_CASTEiJ_P0091167 Slc35f3 protein_coding protein_coding MGP_CASTEiJ_T0088591.1 MGP_CASTEiJ_G0032499.1 mouse_genomes_project 8 23209297 23293226 + MGP_CASTEiJ_P0088591 protein_coding protein_coding MGP_CASTEiJ_T0088592.1 MGP_CASTEiJ_G0032499.1 mouse_genomes_project 8 23209984 23290928 + protein_coding retained_intron MGP_CASTEiJ_T0088593.1 MGP_CASTEiJ_G0032499.1 mouse_genomes_project 8 23209984 23336201 + MGP_CASTEiJ_P0088593 protein_coding protein_coding MGP_CASTEiJ_T0088594.1 MGP_CASTEiJ_G0032499.1 mouse_genomes_project 8 23209984 23293984 + MGP_CASTEiJ_P0088594 protein_coding protein_coding MGP_CASTEiJ_T0088595.1 MGP_CASTEiJ_G0032499.1 mouse_genomes_project 8 23209984 23341186 + MGP_CASTEiJ_P0088595 protein_coding protein_coding MGP_CASTEiJ_T0088596.1 MGP_CASTEiJ_G0032499.1 mouse_genomes_project 8 23210019 23278811 + protein_coding retained_intron MGP_CASTEiJ_T0088597.1 MGP_CASTEiJ_G0032499.1 mouse_genomes_project 8 23251903 23341186 + MGP_CASTEiJ_P0088597 protein_coding protein_coding MGP_CASTEiJ_T0088598.1 MGP_CASTEiJ_G0032499.1 mouse_genomes_project 8 23290456 23293962 + protein_coding retained_intron MGP_CASTEiJ_T0088599.1 MGP_CASTEiJ_G0032499.1 mouse_genomes_project 8 23313342 23336201 + MGP_CASTEiJ_P0088599 protein_coding protein_coding MGP_CASTEiJ_T0088600.1 MGP_CASTEiJ_G0032499.1 mouse_genomes_project 8 23317676 23329114 + protein_coding retained_intron MGP_CASTEiJ_T0088601.1 MGP_CASTEiJ_G0032499.1 mouse_genomes_project 8 23319111 23320137 + protein_coding retained_intron MGP_CASTEiJ_T0015383.1 MGP_CASTEiJ_G0013546.1 mouse_genomes_project 8 76466946 76467739 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088566.1 MGP_CASTEiJ_G0032494.1 mouse_genomes_project 8 22576574 22590061 - MGP_CASTEiJ_P0088566 Htra4 protein_coding protein_coding MGP_CASTEiJ_T0088567.1 MGP_CASTEiJ_G0032494.1 mouse_genomes_project 8 22580766 22588429 - Htra4 protein_coding retained_intron MGP_CASTEiJ_T0089776.1 MGP_CASTEiJ_G0032870.1 mouse_genomes_project 8 84081496 84090473 - MGP_CASTEiJ_P0089776 Dcaf15 protein_coding protein_coding MGP_CASTEiJ_T0089777.1 MGP_CASTEiJ_G0032870.1 mouse_genomes_project 8 84081874 84090448 - MGP_CASTEiJ_P0089777 Dcaf15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0089553.1 MGP_CASTEiJ_G0032786.1 mouse_genomes_project 8 71715565 71725311 + Tpm4 protein_coding processed_transcript MGP_CASTEiJ_T0089554.1 MGP_CASTEiJ_G0032786.1 mouse_genomes_project 8 71715849 71733488 + MGP_CASTEiJ_P0089554 Tpm4 protein_coding protein_coding MGP_CASTEiJ_T0088092.1 MGP_CASTEiJ_G0032330.1 mouse_genomes_project 8 571839 575833 + MGP_CASTEiJ_P0088092 Pet100 protein_coding protein_coding MGP_CASTEiJ_T0089197.1 MGP_CASTEiJ_G0032682.1 mouse_genomes_project 8 68730512 68731826 - MGP_CASTEiJ_P0089197 protein_coding protein_coding MGP_CASTEiJ_T0088796.1 MGP_CASTEiJ_G0032571.1 mouse_genomes_project 8 38898192 38980965 - MGP_CASTEiJ_P0088796 Mtmr7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088797.1 MGP_CASTEiJ_G0032571.1 mouse_genomes_project 8 38898198 38980950 - MGP_CASTEiJ_P0088797 Mtmr7 protein_coding protein_coding MGP_CASTEiJ_T0088798.1 MGP_CASTEiJ_G0032571.1 mouse_genomes_project 8 38900951 38936201 - MGP_CASTEiJ_P0088798 Mtmr7 protein_coding protein_coding MGP_CASTEiJ_T0088799.1 MGP_CASTEiJ_G0032571.1 mouse_genomes_project 8 38901757 38980968 - MGP_CASTEiJ_P0088799 Mtmr7 protein_coding protein_coding MGP_CASTEiJ_T0088800.1 MGP_CASTEiJ_G0032571.1 mouse_genomes_project 8 38911985 38980933 - MGP_CASTEiJ_P0088800 Mtmr7 protein_coding protein_coding MGP_CASTEiJ_T0088801.1 MGP_CASTEiJ_G0032571.1 mouse_genomes_project 8 38953436 38980973 - Mtmr7 protein_coding processed_transcript MGP_CASTEiJ_T0090127.1 MGP_CASTEiJ_G0032967.1 mouse_genomes_project 8 94432409 94476808 - MGP_CASTEiJ_P0090127 Amfr protein_coding protein_coding MGP_CASTEiJ_T0090128.1 MGP_CASTEiJ_G0032967.1 mouse_genomes_project 8 94433725 94435738 - Amfr protein_coding retained_intron MGP_CASTEiJ_T0090129.1 MGP_CASTEiJ_G0032967.1 mouse_genomes_project 8 94433781 94434783 - Amfr protein_coding processed_transcript MGP_CASTEiJ_T0090130.1 MGP_CASTEiJ_G0032967.1 mouse_genomes_project 8 94459303 94476266 - MGP_CASTEiJ_P0090130 Amfr protein_coding protein_coding MGP_CASTEiJ_T0098724.1 MGP_CASTEiJ_G0035655.1 mouse_genomes_project 8 68756824 68757110 + Gm25661 ribozyme ribozyme MGP_CASTEiJ_T0088438.1 MGP_CASTEiJ_G0032441.1 mouse_genomes_project 8 19076275 19077245 + MGP_CASTEiJ_P0088438 Gm15292 protein_coding protein_coding MGP_CASTEiJ_T0088886.1 MGP_CASTEiJ_G0032594.1 mouse_genomes_project 8 44527237 44552064 - MGP_CASTEiJ_P0088886 1700029J07Rik protein_coding protein_coding MGP_CASTEiJ_T0088887.1 MGP_CASTEiJ_G0032594.1 mouse_genomes_project 8 44527239 44552064 - MGP_CASTEiJ_P0088887 1700029J07Rik protein_coding protein_coding MGP_CASTEiJ_T0089712.1 MGP_CASTEiJ_G0032849.1 mouse_genomes_project 8 83504315 83509574 + MGP_CASTEiJ_P0089712 Ndufb7 protein_coding protein_coding MGP_CASTEiJ_T0089713.1 MGP_CASTEiJ_G0032849.1 mouse_genomes_project 8 83504402 83509574 + Ndufb7 protein_coding retained_intron MGP_CASTEiJ_T0088684.1 MGP_CASTEiJ_G0032535.1 mouse_genomes_project 8 31159688 31326550 - MGP_CASTEiJ_P0088684 Wrn protein_coding protein_coding MGP_CASTEiJ_T0088685.1 MGP_CASTEiJ_G0032535.1 mouse_genomes_project 8 31159688 31326550 - MGP_CASTEiJ_P0088685 Wrn protein_coding protein_coding MGP_CASTEiJ_T0008894.1 MGP_CASTEiJ_G0007171.1 mouse_genomes_project 8 86984153 86984824 - Gm27168 lincRNA lincRNA MGP_CASTEiJ_T0089304.1 MGP_CASTEiJ_G0032712.1 mouse_genomes_project 8 69731667 69735311 + MGP_CASTEiJ_P0089304 Homer3 protein_coding protein_coding MGP_CASTEiJ_T0089305.1 MGP_CASTEiJ_G0032712.1 mouse_genomes_project 8 69731667 69743101 + MGP_CASTEiJ_P0089305 Homer3 protein_coding protein_coding MGP_CASTEiJ_T0089306.1 MGP_CASTEiJ_G0032712.1 mouse_genomes_project 8 69731839 69743101 + MGP_CASTEiJ_P0089306 Homer3 protein_coding protein_coding MGP_CASTEiJ_T0089307.1 MGP_CASTEiJ_G0032712.1 mouse_genomes_project 8 69731874 69735083 + Homer3 protein_coding retained_intron MGP_CASTEiJ_T0089308.1 MGP_CASTEiJ_G0032712.1 mouse_genomes_project 8 69734021 69743093 + MGP_CASTEiJ_P0089308 Homer3 protein_coding protein_coding MGP_CASTEiJ_T0089309.1 MGP_CASTEiJ_G0032712.1 mouse_genomes_project 8 69734707 69740480 + Homer3 protein_coding retained_intron MGP_CASTEiJ_T0089310.1 MGP_CASTEiJ_G0032712.1 mouse_genomes_project 8 69737937 69740345 + Homer3 protein_coding retained_intron MGP_CASTEiJ_T0089311.1 MGP_CASTEiJ_G0032712.1 mouse_genomes_project 8 69739817 69742210 + MGP_CASTEiJ_P0089311 Homer3 protein_coding protein_coding MGP_CASTEiJ_T0010699.1 MGP_CASTEiJ_G0008887.1 mouse_genomes_project 8 108939477 108939547 + Mir140 miRNA miRNA MGP_CASTEiJ_T0090675.1 MGP_CASTEiJ_G0033162.1 mouse_genomes_project 8 113688873 113702031 + MGP_CASTEiJ_P0090675 Gabarapl2 protein_coding protein_coding MGP_CASTEiJ_T0090676.1 MGP_CASTEiJ_G0033162.1 mouse_genomes_project 8 113688928 113689942 + Gabarapl2 protein_coding retained_intron MGP_CASTEiJ_T0089627.1 MGP_CASTEiJ_G0032817.1 mouse_genomes_project 8 77235951 77250489 - MGP_CASTEiJ_P0089627 Tmem184c protein_coding protein_coding MGP_CASTEiJ_T0089628.1 MGP_CASTEiJ_G0032817.1 mouse_genomes_project 8 77243525 77250534 - MGP_CASTEiJ_P0089628 Tmem184c protein_coding protein_coding MGP_CASTEiJ_T0089629.1 MGP_CASTEiJ_G0032817.1 mouse_genomes_project 8 77247024 77250504 - MGP_CASTEiJ_P0089629 Tmem184c protein_coding protein_coding MGP_CASTEiJ_T0090170.1 MGP_CASTEiJ_G0032982.1 mouse_genomes_project 8 95170814 95178462 + MGP_CASTEiJ_P0090170 Arl2bp protein_coding protein_coding MGP_CASTEiJ_T0090171.1 MGP_CASTEiJ_G0032982.1 mouse_genomes_project 8 95171285 95178462 + MGP_CASTEiJ_P0090171 Arl2bp protein_coding protein_coding MGP_CASTEiJ_T0015337.1 MGP_CASTEiJ_G0013500.1 mouse_genomes_project 8 729482 729881 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088119.1 MGP_CASTEiJ_G0032336.1 mouse_genomes_project 8 638868 651507 - MGP_CASTEiJ_P0088119 Fcer2a protein_coding protein_coding MGP_CASTEiJ_T0089961.1 MGP_CASTEiJ_G0032915.1 mouse_genomes_project 8 85337124 85345787 + MGP_CASTEiJ_P0089961 Orc6 protein_coding protein_coding MGP_CASTEiJ_T0089962.1 MGP_CASTEiJ_G0032915.1 mouse_genomes_project 8 85337124 85345787 + MGP_CASTEiJ_P0089962 Orc6 protein_coding protein_coding MGP_CASTEiJ_T0088735.1 MGP_CASTEiJ_G0032552.1 mouse_genomes_project 8 33462893 33474753 + MGP_CASTEiJ_P0088735 Ppp1r3b protein_coding unknown_likely_coding MGP_CASTEiJ_T0008947.1 MGP_CASTEiJ_G0007203.1 mouse_genomes_project 8 112480100 112568371 - Gm26816 lincRNA lincRNA MGP_CASTEiJ_T0089560.1 MGP_CASTEiJ_G0032789.1 mouse_genomes_project 8 71791174 71799575 - MGP_CASTEiJ_P0089560 Cib3 protein_coding protein_coding MGP_CASTEiJ_T0089612.1 MGP_CASTEiJ_G0032811.1 mouse_genomes_project 8 74748423 74762514 + MGP_CASTEiJ_P0089612 Rasd2 protein_coding protein_coding MGP_CASTEiJ_T0089613.1 MGP_CASTEiJ_G0032811.1 mouse_genomes_project 8 74748981 74760839 + MGP_CASTEiJ_P0089613 Rasd2 protein_coding protein_coding MGP_CASTEiJ_T0008834.1 MGP_CASTEiJ_G0007121.1 mouse_genomes_project 8 8546330 8549493 + E230013L22Rik lincRNA lincRNA MGP_CASTEiJ_T0008936.1 MGP_CASTEiJ_G0007195.1 mouse_genomes_project 8 103688205 103689332 + lincRNA lincRNA MGP_CASTEiJ_T0089813.1 MGP_CASTEiJ_G0032881.1 mouse_genomes_project 8 84687090 84706702 - MGP_CASTEiJ_P0089813 Nacc1 protein_coding protein_coding MGP_CASTEiJ_T0089780.1 MGP_CASTEiJ_G0032872.1 mouse_genomes_project 8 84119342 84141143 - MGP_CASTEiJ_P0089780 Cc2d1a protein_coding protein_coding MGP_CASTEiJ_T0089781.1 MGP_CASTEiJ_G0032872.1 mouse_genomes_project 8 84119342 84141214 - MGP_CASTEiJ_P0089781 Cc2d1a protein_coding protein_coding MGP_CASTEiJ_T0089782.1 MGP_CASTEiJ_G0032872.1 mouse_genomes_project 8 84119351 84125200 - Cc2d1a protein_coding retained_intron MGP_CASTEiJ_T0089783.1 MGP_CASTEiJ_G0032872.1 mouse_genomes_project 8 84139732 84141175 - Cc2d1a protein_coding processed_transcript MGP_CASTEiJ_T0010677.1 MGP_CASTEiJ_G0008865.1 mouse_genomes_project 8 84204796 84204883 + Mir27a miRNA miRNA MGP_CASTEiJ_T0002264.1 MGP_CASTEiJ_G0002182.1 mouse_genomes_project 8 106858236 106859319 + TEC TEC MGP_CASTEiJ_T0089479.1 MGP_CASTEiJ_G0032766.1 mouse_genomes_project 8 71095098 71102004 + MGP_CASTEiJ_P0089479 Mvb12a protein_coding protein_coding MGP_CASTEiJ_T0101336.1 MGP_CASTEiJ_G0038249.1 mouse_genomes_project 8 102438794 102438919 - Gm22223 snoRNA snoRNA MGP_CASTEiJ_T0101290.1 MGP_CASTEiJ_G0038203.1 mouse_genomes_project 8 14214017 14214137 + Gm25278 snoRNA snoRNA MGP_CASTEiJ_T0100076.1 MGP_CASTEiJ_G0036989.1 mouse_genomes_project 8 77476269 77476375 + Gm23981 snRNA snRNA MGP_CASTEiJ_T0088520.1 MGP_CASTEiJ_G0032478.1 mouse_genomes_project 8 20654224 20659931 + MGP_CASTEiJ_P0088520 Nkx6-3 protein_coding protein_coding MGP_CASTEiJ_T0100095.1 MGP_CASTEiJ_G0037008.1 mouse_genomes_project 8 120709351 120709458 - Gm24035 snRNA snRNA MGP_CASTEiJ_T0011378.1 MGP_CASTEiJ_G0009566.1 mouse_genomes_project 8 1138421 1138713 + Gm26102 misc_RNA misc_RNA MGP_CASTEiJ_T0008890.1 MGP_CASTEiJ_G0007167.1 mouse_genomes_project 8 84205022 84205711 + Gm26532 lincRNA lincRNA MGP_CASTEiJ_T0088115.1 MGP_CASTEiJ_G0032333.1 mouse_genomes_project 8 607172 611531 + MGP_CASTEiJ_P0088115 Retn protein_coding protein_coding MGP_CASTEiJ_T0088116.1 MGP_CASTEiJ_G0032333.1 mouse_genomes_project 8 607172 609509 + MGP_CASTEiJ_P0088116 Retn protein_coding protein_coding MGP_CASTEiJ_T0100100.1 MGP_CASTEiJ_G0037013.1 mouse_genomes_project 8 129928203 129928364 + Gm22730 snRNA snRNA MGP_CASTEiJ_T0089578.1 MGP_CASTEiJ_G0032799.1 mouse_genomes_project 8 72085759 72144211 - MGP_CASTEiJ_P0089578 Med26 protein_coding protein_coding MGP_CASTEiJ_T0005190.1 MGP_CASTEiJ_G0004411.1 mouse_genomes_project 8 10045399 10062725 - Gm15347 antisense antisense MGP_CASTEiJ_T0088616.1 MGP_CASTEiJ_G0032506.1 mouse_genomes_project 8 23442342 23462562 - MGP_CASTEiJ_P0088616 Ash2l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088617.1 MGP_CASTEiJ_G0032506.1 mouse_genomes_project 8 23442688 23462569 - MGP_CASTEiJ_P0088617 Ash2l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088618.1 MGP_CASTEiJ_G0032506.1 mouse_genomes_project 8 23443218 23462557 - MGP_CASTEiJ_P0088618 Ash2l protein_coding protein_coding MGP_CASTEiJ_T0088619.1 MGP_CASTEiJ_G0032506.1 mouse_genomes_project 8 23446389 23447215 - Ash2l protein_coding retained_intron MGP_CASTEiJ_T0088620.1 MGP_CASTEiJ_G0032506.1 mouse_genomes_project 8 23446784 23452990 - Ash2l protein_coding retained_intron MGP_CASTEiJ_T0088621.1 MGP_CASTEiJ_G0032506.1 mouse_genomes_project 8 23450654 23452445 - Ash2l protein_coding processed_transcript MGP_CASTEiJ_T0090006.1 MGP_CASTEiJ_G0032930.1 mouse_genomes_project 8 87631444 87656990 + MGP_CASTEiJ_P0090006 4933402J07Rik protein_coding protein_coding MGP_CASTEiJ_T0089208.1 MGP_CASTEiJ_G0032688.1 mouse_genomes_project 8 69142846 69179198 - MGP_CASTEiJ_P0089208 Gm20422 protein_coding protein_coding MGP_CASTEiJ_T0089210.1 MGP_CASTEiJ_G0032688.1 mouse_genomes_project 8 69143168 69171130 - MGP_CASTEiJ_P0089210 Gm20422 protein_coding protein_coding MGP_CASTEiJ_T0005212.1 MGP_CASTEiJ_G0004426.1 mouse_genomes_project 8 39413270 39426366 + Gm16193 antisense antisense MGP_CASTEiJ_T0010686.1 MGP_CASTEiJ_G0008874.1 mouse_genomes_project 8 88240775 88240843 + Mir7071 miRNA miRNA MGP_CASTEiJ_T0100081.1 MGP_CASTEiJ_G0036994.1 mouse_genomes_project 8 86713189 86713297 - Gm22305 snRNA snRNA MGP_CASTEiJ_T0090744.1 MGP_CASTEiJ_G0033189.1 mouse_genomes_project 8 120040058 120053527 - MGP_CASTEiJ_P0090744 Mphosph6 protein_coding protein_coding MGP_CASTEiJ_T0089921.1 MGP_CASTEiJ_G0032903.1 mouse_genomes_project 8 85071193 85078440 - MGP_CASTEiJ_P0089921 Asna1 protein_coding protein_coding MGP_CASTEiJ_T0008876.1 MGP_CASTEiJ_G0007155.1 mouse_genomes_project 8 70255973 70256987 + 2010320M18Rik lincRNA lincRNA MGP_CASTEiJ_T0088763.1 MGP_CASTEiJ_G0032561.1 mouse_genomes_project 8 35165594 35167510 + MGP_CASTEiJ_P0088763 AI429214 protein_coding protein_coding MGP_CASTEiJ_T0015379.1 MGP_CASTEiJ_G0013542.1 mouse_genomes_project 8 74811659 74812789 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0089611.1 MGP_CASTEiJ_G0032810.1 mouse_genomes_project 8 74649161 74668930 + MGP_CASTEiJ_P0089611 Mcm5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090771.1 MGP_CASTEiJ_G0033197.1 mouse_genomes_project 8 121925553 121938799 - MGP_CASTEiJ_P0090771 Hsdl1 protein_coding protein_coding MGP_CASTEiJ_T0089711.1 MGP_CASTEiJ_G0032848.1 mouse_genomes_project 8 83476637 83477733 + MGP_CASTEiJ_P0089711 Olfr370 protein_coding protein_coding MGP_CASTEiJ_T0005220.1 MGP_CASTEiJ_G0004433.1 mouse_genomes_project 8 57543698 57544731 + Gm15882 antisense antisense MGP_CASTEiJ_T0090527.1 MGP_CASTEiJ_G0033114.1 mouse_genomes_project 8 108822184 108946612 + MGP_CASTEiJ_P0090527 Wwp2 protein_coding protein_coding MGP_CASTEiJ_T0090301.1 MGP_CASTEiJ_G0033029.1 mouse_genomes_project 8 105781494 105784753 - MGP_CASTEiJ_P0090301 Rrad protein_coding protein_coding MGP_CASTEiJ_T0090537.1 MGP_CASTEiJ_G0033121.1 mouse_genomes_project 8 111108982 111123248 - MGP_CASTEiJ_P0090537 Dhodh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090538.1 MGP_CASTEiJ_G0033121.1 mouse_genomes_project 8 111110884 111111691 - Dhodh protein_coding processed_transcript MGP_CASTEiJ_T0090539.1 MGP_CASTEiJ_G0033121.1 mouse_genomes_project 8 111110885 111125688 - MGP_CASTEiJ_P0090539 Dhodh protein_coding protein_coding MGP_CASTEiJ_T0090540.1 MGP_CASTEiJ_G0033121.1 mouse_genomes_project 8 111111116 111125638 - MGP_CASTEiJ_P0090540 Dhodh protein_coding protein_coding MGP_CASTEiJ_T0090541.1 MGP_CASTEiJ_G0033121.1 mouse_genomes_project 8 111111382 111125638 - MGP_CASTEiJ_P0090541 Dhodh protein_coding protein_coding MGP_CASTEiJ_T0090542.1 MGP_CASTEiJ_G0033121.1 mouse_genomes_project 8 111111536 111113927 - Dhodh protein_coding retained_intron MGP_CASTEiJ_T0090543.1 MGP_CASTEiJ_G0033121.1 mouse_genomes_project 8 111111608 111112589 - Dhodh protein_coding retained_intron MGP_CASTEiJ_T0090544.1 MGP_CASTEiJ_G0033121.1 mouse_genomes_project 8 111111685 111118951 - Dhodh protein_coding retained_intron MGP_CASTEiJ_T0090545.1 MGP_CASTEiJ_G0033121.1 mouse_genomes_project 8 111113674 111125381 - MGP_CASTEiJ_P0090545 Dhodh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090546.1 MGP_CASTEiJ_G0033121.1 mouse_genomes_project 8 111118758 111125435 - Dhodh protein_coding retained_intron MGP_CASTEiJ_T0090547.1 MGP_CASTEiJ_G0033121.1 mouse_genomes_project 8 111118770 111125435 - Dhodh protein_coding retained_intron MGP_CASTEiJ_T0090548.1 MGP_CASTEiJ_G0033121.1 mouse_genomes_project 8 111120742 111125688 - MGP_CASTEiJ_P0090548 Dhodh protein_coding protein_coding MGP_CASTEiJ_T0089329.1 MGP_CASTEiJ_G0032716.1 mouse_genomes_project 8 69781689 69803423 - MGP_CASTEiJ_P0089329 Upf1 protein_coding protein_coding MGP_CASTEiJ_T0089330.1 MGP_CASTEiJ_G0032716.1 mouse_genomes_project 8 69782172 69803155 - MGP_CASTEiJ_P0089330 Upf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088967.1 MGP_CASTEiJ_G0032618.1 mouse_genomes_project 8 46531004 46709050 - MGP_CASTEiJ_P0088967 protein_coding protein_coding MGP_CASTEiJ_T0088482.1 MGP_CASTEiJ_G0032472.1 mouse_genomes_project 8 20085087 20111947 - MGP_CASTEiJ_P0088482 Polb protein_coding protein_coding MGP_CASTEiJ_T0090533.1 MGP_CASTEiJ_G0033118.1 mouse_genomes_project 8 111064025 111081686 - MGP_CASTEiJ_P0090533 Dhx38 protein_coding protein_coding MGP_CASTEiJ_T0089563.1 MGP_CASTEiJ_G0032792.1 mouse_genomes_project 8 71813447 71831786 + MGP_CASTEiJ_P0089563 Ap1m1 protein_coding protein_coding MGP_CASTEiJ_T0089564.1 MGP_CASTEiJ_G0032792.1 mouse_genomes_project 8 71813539 71824296 + MGP_CASTEiJ_P0089564 Ap1m1 protein_coding protein_coding MGP_CASTEiJ_T0089565.1 MGP_CASTEiJ_G0032792.1 mouse_genomes_project 8 71813752 71826209 + MGP_CASTEiJ_P0089565 Ap1m1 protein_coding protein_coding MGP_CASTEiJ_T0089566.1 MGP_CASTEiJ_G0032792.1 mouse_genomes_project 8 71827246 71830810 + Ap1m1 protein_coding retained_intron MGP_CASTEiJ_T0089567.1 MGP_CASTEiJ_G0032792.1 mouse_genomes_project 8 71827326 71831314 + Ap1m1 protein_coding retained_intron MGP_CASTEiJ_T0091112.1 MGP_CASTEiJ_G0033286.1 mouse_genomes_project 8 127367638 127421679 - MGP_CASTEiJ_P0091112 Ttc13 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091113.1 MGP_CASTEiJ_G0033286.1 mouse_genomes_project 8 127367648 127421700 - MGP_CASTEiJ_P0091113 Ttc13 protein_coding protein_coding MGP_CASTEiJ_T0091114.1 MGP_CASTEiJ_G0033286.1 mouse_genomes_project 8 127367648 127421681 - MGP_CASTEiJ_P0091114 Ttc13 protein_coding protein_coding MGP_CASTEiJ_T0091115.1 MGP_CASTEiJ_G0033286.1 mouse_genomes_project 8 127367648 127421689 - MGP_CASTEiJ_P0091115 Ttc13 protein_coding protein_coding MGP_CASTEiJ_T0091116.1 MGP_CASTEiJ_G0033286.1 mouse_genomes_project 8 127369761 127370539 - Ttc13 protein_coding retained_intron MGP_CASTEiJ_T0091117.1 MGP_CASTEiJ_G0033286.1 mouse_genomes_project 8 127370267 127371824 - Ttc13 protein_coding retained_intron MGP_CASTEiJ_T0091118.1 MGP_CASTEiJ_G0033286.1 mouse_genomes_project 8 127370418 127375272 - Ttc13 protein_coding retained_intron MGP_CASTEiJ_T0091119.1 MGP_CASTEiJ_G0033286.1 mouse_genomes_project 8 127375358 127378852 - Ttc13 protein_coding retained_intron MGP_CASTEiJ_T0091120.1 MGP_CASTEiJ_G0033286.1 mouse_genomes_project 8 127375865 127378444 - Ttc13 protein_coding retained_intron MGP_CASTEiJ_T0091121.1 MGP_CASTEiJ_G0033286.1 mouse_genomes_project 8 127406625 127421698 - Ttc13 protein_coding retained_intron MGP_CASTEiJ_T0010680.1 MGP_CASTEiJ_G0008868.1 mouse_genomes_project 8 84901186 84901248 + Mir7069 miRNA miRNA MGP_CASTEiJ_T0090575.1 MGP_CASTEiJ_G0033135.1 mouse_genomes_project 8 111846589 112209469 + MGP_CASTEiJ_P0090575 Hydin protein_coding protein_coding MGP_CASTEiJ_T0090576.1 MGP_CASTEiJ_G0033135.1 mouse_genomes_project 8 111846595 112209273 + MGP_CASTEiJ_P0090576 Hydin protein_coding unknown_likely_coding MGP_CASTEiJ_T0090146.1 MGP_CASTEiJ_G0032975.1 mouse_genomes_project 8 94713853 94823569 + MGP_CASTEiJ_P0090146 Nup93 protein_coding protein_coding MGP_CASTEiJ_T0090147.1 MGP_CASTEiJ_G0032975.1 mouse_genomes_project 8 94729655 94823789 + MGP_CASTEiJ_P0090147 Nup93 protein_coding protein_coding MGP_CASTEiJ_T0002270.1 MGP_CASTEiJ_G0002188.1 mouse_genomes_project 8 123164637 123165505 + TEC TEC MGP_CASTEiJ_T0089671.1 MGP_CASTEiJ_G0032833.1 mouse_genomes_project 8 80281741 80303273 + MGP_CASTEiJ_P0089671 Gypa protein_coding protein_coding MGP_CASTEiJ_T0015404.1 MGP_CASTEiJ_G0013567.1 mouse_genomes_project 8 108376312 108376882 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015381.1 MGP_CASTEiJ_G0013544.1 mouse_genomes_project 8 74926115 74926846 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088688.1 MGP_CASTEiJ_G0032537.1 mouse_genomes_project 8 31370662 31371504 + MGP_CASTEiJ_P0088688 5930422O12Rik protein_coding protein_coding MGP_CASTEiJ_T0100096.1 MGP_CASTEiJ_G0037009.1 mouse_genomes_project 8 124423351 124423458 + Gm24283 snRNA snRNA MGP_CASTEiJ_T0088959.1 MGP_CASTEiJ_G0032612.1 mouse_genomes_project 8 46338827 46346862 - MGP_CASTEiJ_P0088959 Ing2 protein_coding protein_coding MGP_CASTEiJ_T0088960.1 MGP_CASTEiJ_G0032612.1 mouse_genomes_project 8 46338827 46345371 - MGP_CASTEiJ_P0088960 Ing2 protein_coding protein_coding MGP_CASTEiJ_T0088961.1 MGP_CASTEiJ_G0032612.1 mouse_genomes_project 8 46340405 46348252 - MGP_CASTEiJ_P0088961 Ing2 protein_coding protein_coding MGP_CASTEiJ_T0090973.1 MGP_CASTEiJ_G0033245.1 mouse_genomes_project 8 125226013 125226338 + MGP_CASTEiJ_P0090973 Gm11273 protein_coding protein_coding MGP_CASTEiJ_T0088602.1 MGP_CASTEiJ_G0032500.1 mouse_genomes_project 8 23341579 23347443 + MGP_CASTEiJ_P0088602 Plpp5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088603.1 MGP_CASTEiJ_G0032500.1 mouse_genomes_project 8 23341579 23347443 + MGP_CASTEiJ_P0088603 Plpp5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088604.1 MGP_CASTEiJ_G0032500.1 mouse_genomes_project 8 23341582 23347443 + Plpp5 protein_coding retained_intron MGP_CASTEiJ_T0088605.1 MGP_CASTEiJ_G0032500.1 mouse_genomes_project 8 23341582 23347443 + MGP_CASTEiJ_P0088605 Plpp5 protein_coding protein_coding MGP_CASTEiJ_T0088606.1 MGP_CASTEiJ_G0032500.1 mouse_genomes_project 8 23341582 23347443 + MGP_CASTEiJ_P0088606 Plpp5 protein_coding protein_coding MGP_CASTEiJ_T0088607.1 MGP_CASTEiJ_G0032500.1 mouse_genomes_project 8 23341618 23343645 + Plpp5 protein_coding retained_intron MGP_CASTEiJ_T0088608.1 MGP_CASTEiJ_G0032500.1 mouse_genomes_project 8 23341899 23347439 + Plpp5 protein_coding retained_intron MGP_CASTEiJ_T0088609.1 MGP_CASTEiJ_G0032500.1 mouse_genomes_project 8 23341973 23347443 + Plpp5 protein_coding processed_transcript MGP_CASTEiJ_T0088610.1 MGP_CASTEiJ_G0032500.1 mouse_genomes_project 8 23344440 23347004 + Plpp5 protein_coding retained_intron MGP_CASTEiJ_T0088982.1 MGP_CASTEiJ_G0032621.1 mouse_genomes_project 8 48175754 48183298 + protein_coding processed_transcript MGP_CASTEiJ_T0088983.1 MGP_CASTEiJ_G0032621.1 mouse_genomes_project 8 48175781 48317181 + MGP_CASTEiJ_P0088983 protein_coding protein_coding MGP_CASTEiJ_T0088984.1 MGP_CASTEiJ_G0032621.1 mouse_genomes_project 8 48276026 48317181 + MGP_CASTEiJ_P0088984 protein_coding protein_coding MGP_CASTEiJ_T0088985.1 MGP_CASTEiJ_G0032621.1 mouse_genomes_project 8 48299988 48337217 + protein_coding processed_transcript MGP_CASTEiJ_T0100097.1 MGP_CASTEiJ_G0037010.1 mouse_genomes_project 8 125144468 125144575 - Gm26497 snRNA snRNA MGP_CASTEiJ_T0015373.1 MGP_CASTEiJ_G0013536.1 mouse_genomes_project 8 65848857 65849153 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090743.1 MGP_CASTEiJ_G0033188.1 mouse_genomes_project 8 119943799 120007430 + MGP_CASTEiJ_P0090743 Hsd17b2 protein_coding protein_coding MGP_CASTEiJ_T0090715.1 MGP_CASTEiJ_G0033176.1 mouse_genomes_project 8 118646577 118832502 - MGP_CASTEiJ_P0090715 Cdyl2 protein_coding protein_coding MGP_CASTEiJ_T0090716.1 MGP_CASTEiJ_G0033176.1 mouse_genomes_project 8 118652783 118832360 - MGP_CASTEiJ_P0090716 Cdyl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0089468.1 MGP_CASTEiJ_G0032762.1 mouse_genomes_project 8 71023051 71033106 - MGP_CASTEiJ_P0089468 Ano8 protein_coding protein_coding MGP_CASTEiJ_T0015409.1 MGP_CASTEiJ_G0013572.1 mouse_genomes_project 8 126651682 126652373 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008951.1 MGP_CASTEiJ_G0007207.1 mouse_genomes_project 8 123071046 123071771 + Gm26739 lincRNA lincRNA MGP_CASTEiJ_T0010682.1 MGP_CASTEiJ_G0008870.1 mouse_genomes_project 8 85117787 85117873 + Mir7070 miRNA miRNA MGP_CASTEiJ_T0090318.1 MGP_CASTEiJ_G0033037.1 mouse_genomes_project 8 106166904 106179222 + MGP_CASTEiJ_P0090318 Ces2h protein_coding protein_coding MGP_CASTEiJ_T0088060.1 MGP_CASTEiJ_G0032321.1 mouse_genomes_project 8 276432 388306 + MGP_CASTEiJ_P0088060 Arhgef18 protein_coding protein_coding MGP_CASTEiJ_T0088061.1 MGP_CASTEiJ_G0032321.1 mouse_genomes_project 8 321403 384432 + Arhgef18 protein_coding retained_intron MGP_CASTEiJ_T0088062.1 MGP_CASTEiJ_G0032321.1 mouse_genomes_project 8 321470 359872 + Arhgef18 protein_coding processed_transcript MGP_CASTEiJ_T0088063.1 MGP_CASTEiJ_G0032321.1 mouse_genomes_project 8 321470 360240 + MGP_CASTEiJ_P0088063 Arhgef18 protein_coding protein_coding MGP_CASTEiJ_T0088064.1 MGP_CASTEiJ_G0032321.1 mouse_genomes_project 8 367550 390387 + Arhgef18 protein_coding retained_intron MGP_CASTEiJ_T0088065.1 MGP_CASTEiJ_G0032321.1 mouse_genomes_project 8 384549 388039 + Arhgef18 protein_coding retained_intron MGP_CASTEiJ_T0008888.1 MGP_CASTEiJ_G0007165.1 mouse_genomes_project 8 83859278 83871753 - Gm26721 lincRNA lincRNA MGP_CASTEiJ_T0090167.1 MGP_CASTEiJ_G0032981.1 mouse_genomes_project 8 95107440 95164313 + MGP_CASTEiJ_P0090167 Rspry1 protein_coding protein_coding MGP_CASTEiJ_T0090168.1 MGP_CASTEiJ_G0032981.1 mouse_genomes_project 8 95107463 95128405 + MGP_CASTEiJ_P0090168 Rspry1 protein_coding protein_coding MGP_CASTEiJ_T0090169.1 MGP_CASTEiJ_G0032981.1 mouse_genomes_project 8 95131571 95135137 + Rspry1 protein_coding retained_intron MGP_CASTEiJ_T0100078.1 MGP_CASTEiJ_G0036991.1 mouse_genomes_project 8 82058099 82058162 - Gm25267 snRNA snRNA MGP_CASTEiJ_T0015356.1 MGP_CASTEiJ_G0013519.1 mouse_genomes_project 8 19220970 19221373 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008937.1 MGP_CASTEiJ_G0007196.1 mouse_genomes_project 8 106360934 106369886 + lincRNA lincRNA MGP_CASTEiJ_T0011388.1 MGP_CASTEiJ_G0009576.1 mouse_genomes_project 8 64611822 64611965 + Gm25403 misc_RNA misc_RNA MGP_CASTEiJ_T0088681.1 MGP_CASTEiJ_G0032532.1 mouse_genomes_project 8 29589033 29592634 - MGP_CASTEiJ_P0088681 protein_coding protein_coding MGP_CASTEiJ_T0089758.1 MGP_CASTEiJ_G0032861.1 mouse_genomes_project 8 83972702 83975350 + MGP_CASTEiJ_P0089758 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091127.1 MGP_CASTEiJ_G0033291.1 mouse_genomes_project 8 127568594 127597730 + MGP_CASTEiJ_P0091127 Gnpat protein_coding protein_coding MGP_CASTEiJ_T0091128.1 MGP_CASTEiJ_G0033291.1 mouse_genomes_project 8 127568633 127594170 + MGP_CASTEiJ_P0091128 Gnpat protein_coding protein_coding MGP_CASTEiJ_T0091129.1 MGP_CASTEiJ_G0033291.1 mouse_genomes_project 8 127590889 127594491 + Gnpat protein_coding retained_intron MGP_CASTEiJ_T0091130.1 MGP_CASTEiJ_G0033291.1 mouse_genomes_project 8 127590958 127597220 + Gnpat protein_coding retained_intron MGP_CASTEiJ_T0091131.1 MGP_CASTEiJ_G0033291.1 mouse_genomes_project 8 127592941 127594349 + Gnpat protein_coding retained_intron MGP_CASTEiJ_T0091132.1 MGP_CASTEiJ_G0033291.1 mouse_genomes_project 8 127595057 127597290 + Gnpat protein_coding retained_intron MGP_CASTEiJ_T0088431.1 MGP_CASTEiJ_G0032435.1 mouse_genomes_project 8 16785360 16787288 + MGP_CASTEiJ_P0088431 Defb3 protein_coding protein_coding MGP_CASTEiJ_T0089975.1 MGP_CASTEiJ_G0032920.1 mouse_genomes_project 8 85649888 85650151 + MGP_CASTEiJ_P0089975 protein_coding protein_coding MGP_CASTEiJ_T0088130.1 MGP_CASTEiJ_G0032342.1 mouse_genomes_project 8 816247 821887 - MGP_CASTEiJ_P0088130 Cd209c protein_coding protein_coding MGP_CASTEiJ_T0088131.1 MGP_CASTEiJ_G0032342.1 mouse_genomes_project 8 816319 824315 - MGP_CASTEiJ_P0088131 Cd209c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088132.1 MGP_CASTEiJ_G0032342.1 mouse_genomes_project 8 820000 824220 - MGP_CASTEiJ_P0088132 Cd209c protein_coding unknown_likely_coding MGP_CASTEiJ_T0017723.1 MGP_CASTEiJ_G0015032.1 mouse_genomes_project 8 71728100 71742294 - Gm16091 processed_transcript processed_transcript MGP_CASTEiJ_T0008902.1 MGP_CASTEiJ_G0007178.1 mouse_genomes_project 8 87523540 87526921 + Gm19872 lincRNA lincRNA MGP_CASTEiJ_T0090279.1 MGP_CASTEiJ_G0033022.1 mouse_genomes_project 8 105476200 105529089 - MGP_CASTEiJ_P0090279 Cmtm4 protein_coding protein_coding MGP_CASTEiJ_T0010708.1 MGP_CASTEiJ_G0008896.1 mouse_genomes_project 8 119662226 119662283 + Mir7077 miRNA miRNA MGP_CASTEiJ_T0090229.1 MGP_CASTEiJ_G0033000.1 mouse_genomes_project 8 95867580 95873398 - MGP_CASTEiJ_P0090229 Zfp319 protein_coding protein_coding MGP_CASTEiJ_T0088994.1 MGP_CASTEiJ_G0032625.1 mouse_genomes_project 8 53694628 53704212 - MGP_CASTEiJ_P0088994 Spcs3 protein_coding protein_coding MGP_CASTEiJ_T0088201.1 MGP_CASTEiJ_G0032360.1 mouse_genomes_project 8 5556842 5582205 - MGP_CASTEiJ_P0088201 Arglu1 protein_coding protein_coding MGP_CASTEiJ_T0090529.1 MGP_CASTEiJ_G0033116.1 mouse_genomes_project 8 110169211 110271201 + MGP_CASTEiJ_P0090529 protein_coding protein_coding MGP_CASTEiJ_T0090530.1 MGP_CASTEiJ_G0033116.1 mouse_genomes_project 8 110263163 110442564 + MGP_CASTEiJ_P0090530 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088120.1 MGP_CASTEiJ_G0032337.1 mouse_genomes_project 8 664031 674494 - MGP_CASTEiJ_P0088120 Clec4g protein_coding protein_coding MGP_CASTEiJ_T0088121.1 MGP_CASTEiJ_G0032337.1 mouse_genomes_project 8 672995 679839 - MGP_CASTEiJ_P0088121 Clec4g protein_coding protein_coding MGP_CASTEiJ_T0088122.1 MGP_CASTEiJ_G0032337.1 mouse_genomes_project 8 674154 675594 - Clec4g protein_coding retained_intron MGP_CASTEiJ_T0005238.1 MGP_CASTEiJ_G0004449.1 mouse_genomes_project 8 105297427 105309145 - antisense antisense MGP_CASTEiJ_T0090373.1 MGP_CASTEiJ_G0033056.1 mouse_genomes_project 8 106595849 106627411 - MGP_CASTEiJ_P0090373 Kctd19 protein_coding protein_coding MGP_CASTEiJ_T0090374.1 MGP_CASTEiJ_G0033056.1 mouse_genomes_project 8 106595849 106627411 - MGP_CASTEiJ_P0090374 Kctd19 protein_coding protein_coding MGP_CASTEiJ_T0090375.1 MGP_CASTEiJ_G0033056.1 mouse_genomes_project 8 106595984 106598421 - MGP_CASTEiJ_P0090375 Kctd19 protein_coding protein_coding MGP_CASTEiJ_T0090376.1 MGP_CASTEiJ_G0033056.1 mouse_genomes_project 8 106606937 106627364 - MGP_CASTEiJ_P0090376 Kctd19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089969.1 MGP_CASTEiJ_G0032918.1 mouse_genomes_project 8 85540507 85574767 + MGP_CASTEiJ_P0089969 Gpt2 protein_coding protein_coding MGP_CASTEiJ_T0089970.1 MGP_CASTEiJ_G0032918.1 mouse_genomes_project 8 85540538 85572040 + MGP_CASTEiJ_P0089970 Gpt2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089971.1 MGP_CASTEiJ_G0032918.1 mouse_genomes_project 8 85540540 85541239 + Gpt2 protein_coding processed_transcript MGP_CASTEiJ_T0089972.1 MGP_CASTEiJ_G0032918.1 mouse_genomes_project 8 85563170 85568739 + Gpt2 protein_coding retained_intron MGP_CASTEiJ_T0089973.1 MGP_CASTEiJ_G0032918.1 mouse_genomes_project 8 85566619 85572886 + Gpt2 protein_coding processed_transcript MGP_CASTEiJ_T0017701.1 MGP_CASTEiJ_G0015025.1 mouse_genomes_project 8 23147916 23156229 - Gm16159 processed_transcript processed_transcript MGP_CASTEiJ_T0017702.1 MGP_CASTEiJ_G0015025.1 mouse_genomes_project 8 23151886 23152769 - Gm16159 processed_transcript processed_transcript MGP_CASTEiJ_T0091135.1 MGP_CASTEiJ_G0033294.1 mouse_genomes_project 8 127619308 127661402 - MGP_CASTEiJ_P0091135 Egln1 protein_coding protein_coding MGP_CASTEiJ_T0090565.1 MGP_CASTEiJ_G0033128.1 mouse_genomes_project 8 111530217 111539634 + MGP_CASTEiJ_P0090565 Tat protein_coding protein_coding MGP_CASTEiJ_T0090566.1 MGP_CASTEiJ_G0033128.1 mouse_genomes_project 8 111530286 111534492 + MGP_CASTEiJ_P0090566 Tat protein_coding protein_coding MGP_CASTEiJ_T0090567.1 MGP_CASTEiJ_G0033128.1 mouse_genomes_project 8 111531184 111539641 + MGP_CASTEiJ_P0090567 Tat protein_coding unknown_likely_coding MGP_CASTEiJ_T0089065.1 MGP_CASTEiJ_G0032646.1 mouse_genomes_project 8 60061062 60198766 + MGP_CASTEiJ_P0089065 Nek1 protein_coding protein_coding MGP_CASTEiJ_T0089066.1 MGP_CASTEiJ_G0032646.1 mouse_genomes_project 8 60061062 60198773 + MGP_CASTEiJ_P0089066 Nek1 protein_coding protein_coding MGP_CASTEiJ_T0089067.1 MGP_CASTEiJ_G0032646.1 mouse_genomes_project 8 60061067 60105972 + Nek1 protein_coding retained_intron MGP_CASTEiJ_T0089068.1 MGP_CASTEiJ_G0032646.1 mouse_genomes_project 8 60061106 60175109 + Nek1 protein_coding retained_intron MGP_CASTEiJ_T0089069.1 MGP_CASTEiJ_G0032646.1 mouse_genomes_project 8 60061108 60090894 + Nek1 protein_coding retained_intron MGP_CASTEiJ_T0089070.1 MGP_CASTEiJ_G0032646.1 mouse_genomes_project 8 60061108 60090361 + Nek1 protein_coding retained_intron MGP_CASTEiJ_T0089071.1 MGP_CASTEiJ_G0032646.1 mouse_genomes_project 8 60111265 60153403 + MGP_CASTEiJ_P0089071 Nek1 protein_coding protein_coding MGP_CASTEiJ_T0090690.1 MGP_CASTEiJ_G0033168.1 mouse_genomes_project 8 115487872 115500261 + MGP_CASTEiJ_P0090690 Syce1l protein_coding protein_coding MGP_CASTEiJ_T0090691.1 MGP_CASTEiJ_G0033168.1 mouse_genomes_project 8 115487872 115500261 + MGP_CASTEiJ_P0090691 Syce1l protein_coding protein_coding MGP_CASTEiJ_T0101287.1 MGP_CASTEiJ_G0038200.1 mouse_genomes_project 8 11139586 11139716 + Gm24698 snoRNA snoRNA MGP_CASTEiJ_T0088615.1 MGP_CASTEiJ_G0032505.1 mouse_genomes_project 8 23434364 23440545 + MGP_CASTEiJ_P0088615 Star protein_coding protein_coding MGP_CASTEiJ_T0090004.1 MGP_CASTEiJ_G0032929.1 mouse_genomes_project 8 87533015 87538522 - MGP_CASTEiJ_P0090004 Cbln1 protein_coding protein_coding MGP_CASTEiJ_T0090005.1 MGP_CASTEiJ_G0032929.1 mouse_genomes_project 8 87533399 87538316 - MGP_CASTEiJ_P0090005 Cbln1 protein_coding protein_coding MGP_CASTEiJ_T0089757.1 MGP_CASTEiJ_G0032860.1 mouse_genomes_project 8 83945391 83971854 + MGP_CASTEiJ_P0089757 Prkaca protein_coding protein_coding MGP_CASTEiJ_T0010641.1 MGP_CASTEiJ_G0008829.1 mouse_genomes_project 8 11648677 11648785 + Gm44347 miRNA miRNA MGP_CASTEiJ_T0010694.1 MGP_CASTEiJ_G0008882.1 mouse_genomes_project 8 106515666 106515775 - Gm27320 miRNA miRNA MGP_CASTEiJ_T0090733.1 MGP_CASTEiJ_G0033183.1 mouse_genomes_project 8 119243771 119287358 + MGP_CASTEiJ_P0090733 Bco1 protein_coding protein_coding MGP_CASTEiJ_T0090734.1 MGP_CASTEiJ_G0033183.1 mouse_genomes_project 8 119243937 119289822 + MGP_CASTEiJ_P0090734 Bco1 protein_coding protein_coding MGP_CASTEiJ_T0098662.1 MGP_CASTEiJ_G0035593.1 mouse_genomes_project 8 54043194 54043313 + n-R5s98 rRNA rRNA MGP_CASTEiJ_T0090038.1 MGP_CASTEiJ_G0032937.1 mouse_genomes_project 8 88658949 88740849 + MGP_CASTEiJ_P0090038 Nkd1 protein_coding protein_coding MGP_CASTEiJ_T0008859.1 MGP_CASTEiJ_G0007139.1 mouse_genomes_project 8 32216709 32226095 + Gm29243 lincRNA lincRNA MGP_CASTEiJ_T0089405.1 MGP_CASTEiJ_G0032745.1 mouse_genomes_project 8 70350149 70352448 + MGP_CASTEiJ_P0089405 protein_coding protein_coding MGP_CASTEiJ_T0090047.1 MGP_CASTEiJ_G0032941.1 mouse_genomes_project 8 89204165 89221448 - MGP_CASTEiJ_P0090047 Sall1 protein_coding protein_coding MGP_CASTEiJ_T0089867.1 MGP_CASTEiJ_G0032891.1 mouse_genomes_project 8 84888594 84902498 + MGP_CASTEiJ_P0089867 Farsa protein_coding protein_coding MGP_CASTEiJ_T0089868.1 MGP_CASTEiJ_G0032891.1 mouse_genomes_project 8 84888600 84902497 + Farsa protein_coding retained_intron MGP_CASTEiJ_T0089869.1 MGP_CASTEiJ_G0032891.1 mouse_genomes_project 8 84888614 84900264 + Farsa protein_coding retained_intron MGP_CASTEiJ_T0089870.1 MGP_CASTEiJ_G0032891.1 mouse_genomes_project 8 84888622 84902498 + MGP_CASTEiJ_P0089870 Farsa protein_coding protein_coding MGP_CASTEiJ_T0089871.1 MGP_CASTEiJ_G0032891.1 mouse_genomes_project 8 84888625 84902497 + MGP_CASTEiJ_P0089871 Farsa protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089872.1 MGP_CASTEiJ_G0032891.1 mouse_genomes_project 8 84900802 84902250 + Farsa protein_coding retained_intron MGP_CASTEiJ_T0008941.1 MGP_CASTEiJ_G0007199.1 mouse_genomes_project 8 107575175 107592698 + Gm10629 lincRNA lincRNA MGP_CASTEiJ_T0090115.1 MGP_CASTEiJ_G0032966.1 mouse_genomes_project 8 94264159 94411515 + MGP_CASTEiJ_P0090115 Gnao1 protein_coding protein_coding MGP_CASTEiJ_T0090116.1 MGP_CASTEiJ_G0032966.1 mouse_genomes_project 8 94266289 94421452 + MGP_CASTEiJ_P0090116 Gnao1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090117.1 MGP_CASTEiJ_G0032966.1 mouse_genomes_project 8 94266314 94267447 + Gnao1 protein_coding retained_intron MGP_CASTEiJ_T0090118.1 MGP_CASTEiJ_G0032966.1 mouse_genomes_project 8 94266516 94430199 + MGP_CASTEiJ_P0090118 Gnao1 protein_coding protein_coding MGP_CASTEiJ_T0090119.1 MGP_CASTEiJ_G0032966.1 mouse_genomes_project 8 94266518 94429768 + MGP_CASTEiJ_P0090119 Gnao1 protein_coding protein_coding MGP_CASTEiJ_T0090120.1 MGP_CASTEiJ_G0032966.1 mouse_genomes_project 8 94266991 94418622 + Gnao1 protein_coding processed_transcript MGP_CASTEiJ_T0090121.1 MGP_CASTEiJ_G0032966.1 mouse_genomes_project 8 94358384 94428977 + MGP_CASTEiJ_P0090121 Gnao1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090122.1 MGP_CASTEiJ_G0032966.1 mouse_genomes_project 8 94410570 94411787 + Gnao1 protein_coding retained_intron MGP_CASTEiJ_T0090123.1 MGP_CASTEiJ_G0032966.1 mouse_genomes_project 8 94411516 94428874 + MGP_CASTEiJ_P0090123 Gnao1 protein_coding protein_coding MGP_CASTEiJ_T0090124.1 MGP_CASTEiJ_G0032966.1 mouse_genomes_project 8 94411516 94428895 + MGP_CASTEiJ_P0090124 Gnao1 protein_coding protein_coding MGP_CASTEiJ_T0090125.1 MGP_CASTEiJ_G0032966.1 mouse_genomes_project 8 94414055 94417700 + Gnao1 protein_coding processed_transcript MGP_CASTEiJ_T0090126.1 MGP_CASTEiJ_G0032966.1 mouse_genomes_project 8 94423659 94427835 + Gnao1 protein_coding retained_intron MGP_CASTEiJ_T0010654.1 MGP_CASTEiJ_G0008842.1 mouse_genomes_project 8 51416800 51416943 + Gm44387 miRNA miRNA MGP_CASTEiJ_T0090681.1 MGP_CASTEiJ_G0033165.1 mouse_genomes_project 8 113761636 113777623 + MGP_CASTEiJ_P0090681 Terf2ip protein_coding protein_coding MGP_CASTEiJ_T0005248.1 MGP_CASTEiJ_G0004457.1 mouse_genomes_project 8 112421299 112423139 + Gm15895 antisense antisense MGP_CASTEiJ_T0002266.1 MGP_CASTEiJ_G0002184.1 mouse_genomes_project 8 110204818 110209999 + TEC TEC MGP_CASTEiJ_T0091146.1 MGP_CASTEiJ_G0033297.1 mouse_genomes_project 8 128151546 128333352 - MGP_CASTEiJ_P0091146 Sipa1l2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091147.1 MGP_CASTEiJ_G0033297.1 mouse_genomes_project 8 128174080 128254418 - MGP_CASTEiJ_P0091147 Sipa1l2 protein_coding protein_coding MGP_CASTEiJ_T0089352.1 MGP_CASTEiJ_G0032724.1 mouse_genomes_project 8 69966637 69987644 - MGP_CASTEiJ_P0089352 Kxd1 protein_coding protein_coding MGP_CASTEiJ_T0089353.1 MGP_CASTEiJ_G0032724.1 mouse_genomes_project 8 69973072 69982700 - MGP_CASTEiJ_P0089353 Kxd1 protein_coding protein_coding MGP_CASTEiJ_T0089354.1 MGP_CASTEiJ_G0032724.1 mouse_genomes_project 8 69973280 69982799 - MGP_CASTEiJ_P0089354 Kxd1 protein_coding protein_coding MGP_CASTEiJ_T0089355.1 MGP_CASTEiJ_G0032724.1 mouse_genomes_project 8 69973803 69982700 - MGP_CASTEiJ_P0089355 Kxd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089356.1 MGP_CASTEiJ_G0032724.1 mouse_genomes_project 8 69974366 69987644 - MGP_CASTEiJ_P0089356 Kxd1 protein_coding protein_coding MGP_CASTEiJ_T0089357.1 MGP_CASTEiJ_G0032724.1 mouse_genomes_project 8 69975077 69982610 - MGP_CASTEiJ_P0089357 Kxd1 protein_coding protein_coding MGP_CASTEiJ_T0089358.1 MGP_CASTEiJ_G0032724.1 mouse_genomes_project 8 69977907 69987124 - MGP_CASTEiJ_P0089358 Kxd1 protein_coding protein_coding MGP_CASTEiJ_T0089359.1 MGP_CASTEiJ_G0032724.1 mouse_genomes_project 8 69978565 69982624 - Kxd1 protein_coding retained_intron MGP_CASTEiJ_T0005196.1 MGP_CASTEiJ_G0004414.1 mouse_genomes_project 8 10258589 10265263 + Gm17023 antisense antisense MGP_CASTEiJ_T0010709.1 MGP_CASTEiJ_G0008897.1 mouse_genomes_project 8 119668416 119668480 + Mir7078 miRNA miRNA MGP_CASTEiJ_T0088210.1 MGP_CASTEiJ_G0032366.1 mouse_genomes_project 8 8020333 8042877 - MGP_CASTEiJ_P0088210 Irs2 protein_coding protein_coding MGP_CASTEiJ_T0008913.1 MGP_CASTEiJ_G0007183.1 mouse_genomes_project 8 88282599 88283066 + 9430002A10Rik lincRNA lincRNA MGP_CASTEiJ_T0008914.1 MGP_CASTEiJ_G0007183.1 mouse_genomes_project 8 88282599 88283072 + 9430002A10Rik lincRNA lincRNA MGP_CASTEiJ_T0089696.1 MGP_CASTEiJ_G0032842.1 mouse_genomes_project 8 83077726 83078812 - MGP_CASTEiJ_P0089696 Gm10645 protein_coding protein_coding MGP_CASTEiJ_T0089224.1 MGP_CASTEiJ_G0032693.1 mouse_genomes_project 8 69239949 69281415 + MGP_CASTEiJ_P0089224 Pbx4 protein_coding protein_coding MGP_CASTEiJ_T0089225.1 MGP_CASTEiJ_G0032693.1 mouse_genomes_project 8 69240082 69267985 + Pbx4 protein_coding retained_intron MGP_CASTEiJ_T0089226.1 MGP_CASTEiJ_G0032693.1 mouse_genomes_project 8 69240095 69281415 + MGP_CASTEiJ_P0089226 Pbx4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089227.1 MGP_CASTEiJ_G0032693.1 mouse_genomes_project 8 69240118 69279818 + MGP_CASTEiJ_P0089227 Pbx4 protein_coding protein_coding MGP_CASTEiJ_T0089228.1 MGP_CASTEiJ_G0032693.1 mouse_genomes_project 8 69240120 69281415 + MGP_CASTEiJ_P0089228 Pbx4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089229.1 MGP_CASTEiJ_G0032693.1 mouse_genomes_project 8 69240148 69281415 + MGP_CASTEiJ_P0089229 Pbx4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089230.1 MGP_CASTEiJ_G0032693.1 mouse_genomes_project 8 69257022 69274117 + Pbx4 protein_coding processed_transcript MGP_CASTEiJ_T0089231.1 MGP_CASTEiJ_G0032693.1 mouse_genomes_project 8 69275245 69279770 + Pbx4 protein_coding retained_intron MGP_CASTEiJ_T0089232.1 MGP_CASTEiJ_G0032693.1 mouse_genomes_project 8 69275517 69281415 + Pbx4 protein_coding retained_intron MGP_CASTEiJ_T0010702.1 MGP_CASTEiJ_G0008890.1 mouse_genomes_project 8 112153440 112153521 - Gm44489 miRNA miRNA MGP_CASTEiJ_T0100066.1 MGP_CASTEiJ_G0036979.1 mouse_genomes_project 8 52598095 52598157 + Gm27964 snRNA snRNA MGP_CASTEiJ_T0002273.1 MGP_CASTEiJ_G0002191.1 mouse_genomes_project 8 126100357 126101010 - TEC TEC MGP_CASTEiJ_T0090495.1 MGP_CASTEiJ_G0033107.1 mouse_genomes_project 8 108396924 108399887 + MGP_CASTEiJ_P0090495 Nip7 protein_coding protein_coding MGP_CASTEiJ_T0090879.1 MGP_CASTEiJ_G0033224.1 mouse_genomes_project 8 124116530 124147661 - MGP_CASTEiJ_P0090879 Fbxo31 protein_coding protein_coding MGP_CASTEiJ_T0090880.1 MGP_CASTEiJ_G0033224.1 mouse_genomes_project 8 124121123 124125984 - Fbxo31 protein_coding processed_transcript MGP_CASTEiJ_T0090881.1 MGP_CASTEiJ_G0033224.1 mouse_genomes_project 8 124122751 124126850 - Fbxo31 protein_coding retained_intron MGP_CASTEiJ_T0090882.1 MGP_CASTEiJ_G0033224.1 mouse_genomes_project 8 124131145 124147645 - MGP_CASTEiJ_P0090882 Fbxo31 protein_coding protein_coding MGP_CASTEiJ_T0015354.1 MGP_CASTEiJ_G0013517.1 mouse_genomes_project 8 19211537 19211958 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0088802.1 MGP_CASTEiJ_G0032572.1 mouse_genomes_project 8 39024001 39031055 + MGP_CASTEiJ_P0088802 Adam24 protein_coding protein_coding MGP_CASTEiJ_T0090256.1 MGP_CASTEiJ_G0033011.1 mouse_genomes_project 8 96392119 96413137 - MGP_CASTEiJ_P0090256 Slc38a7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0090257.1 MGP_CASTEiJ_G0033011.1 mouse_genomes_project 8 96397568 96399311 - Slc38a7 protein_coding retained_intron MGP_CASTEiJ_T0090258.1 MGP_CASTEiJ_G0033011.1 mouse_genomes_project 8 96399509 96401497 - Slc38a7 protein_coding retained_intron MGP_CASTEiJ_T0088148.1 MGP_CASTEiJ_G0032345.1 mouse_genomes_project 8 1072304 1080885 - MGP_CASTEiJ_P0088148 Prr36 protein_coding protein_coding MGP_CASTEiJ_T0088149.1 MGP_CASTEiJ_G0032345.1 mouse_genomes_project 8 1078645 1080485 - MGP_CASTEiJ_P0088149 Prr36 protein_coding protein_coding MGP_CASTEiJ_T0088150.1 MGP_CASTEiJ_G0032345.1 mouse_genomes_project 8 1079568 1080725 - MGP_CASTEiJ_P0088150 Prr36 protein_coding protein_coding MGP_CASTEiJ_T0088151.1 MGP_CASTEiJ_G0032345.1 mouse_genomes_project 8 1079980 1081032 - MGP_CASTEiJ_P0088151 Prr36 protein_coding protein_coding MGP_CASTEiJ_T0090906.1 MGP_CASTEiJ_G0033229.1 mouse_genomes_project 8 124469100 124495616 - MGP_CASTEiJ_P0090906 Slc7a5 protein_coding protein_coding MGP_CASTEiJ_T0090907.1 MGP_CASTEiJ_G0033229.1 mouse_genomes_project 8 124470755 124471868 - Slc7a5 protein_coding retained_intron MGP_CASTEiJ_T0090908.1 MGP_CASTEiJ_G0033229.1 mouse_genomes_project 8 124476346 124484435 - Slc7a5 protein_coding processed_transcript MGP_CASTEiJ_T0089233.1 MGP_CASTEiJ_G0032694.1 mouse_genomes_project 8 69289409 69296778 - MGP_CASTEiJ_P0089233 Cilp2 protein_coding protein_coding MGP_CASTEiJ_T0002263.1 MGP_CASTEiJ_G0002181.1 mouse_genomes_project 8 100825931 100827939 + TEC TEC MGP_CASTEiJ_T0010649.1 MGP_CASTEiJ_G0008837.1 mouse_genomes_project 8 32158314 32158405 - Mir6395 miRNA miRNA MGP_CASTEiJ_T0088926.1 MGP_CASTEiJ_G0032603.1 mouse_genomes_project 8 45147185 45179306 + MGP_CASTEiJ_P0088926 Cenpu protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0088927.1 MGP_CASTEiJ_G0032603.1 mouse_genomes_project 8 45147190 45178882 + MGP_CASTEiJ_P0088927 Cenpu protein_coding protein_coding MGP_CASTEiJ_T0088928.1 MGP_CASTEiJ_G0032603.1 mouse_genomes_project 8 45147191 45151537 + Cenpu protein_coding retained_intron MGP_CASTEiJ_T0088929.1 MGP_CASTEiJ_G0032603.1 mouse_genomes_project 8 45147217 45177681 + MGP_CASTEiJ_P0088929 Cenpu protein_coding protein_coding MGP_CASTEiJ_T0088930.1 MGP_CASTEiJ_G0032603.1 mouse_genomes_project 8 45155411 45157770 + Cenpu protein_coding processed_transcript MGP_CASTEiJ_T0088931.1 MGP_CASTEiJ_G0032603.1 mouse_genomes_project 8 45157064 45172135 + Cenpu protein_coding retained_intron MGP_CASTEiJ_T0088932.1 MGP_CASTEiJ_G0032603.1 mouse_genomes_project 8 45172477 45177691 + Cenpu protein_coding retained_intron MGP_CASTEiJ_T0101285.1 MGP_CASTEiJ_G0038198.1 mouse_genomes_project 8 3056887 3057031 - Gm24288 snoRNA snoRNA MGP_CASTEiJ_T0091110.1 MGP_CASTEiJ_G0033285.1 mouse_genomes_project 8 127329133 127359598 - MGP_CASTEiJ_P0091110 2310022B05Rik protein_coding protein_coding MGP_CASTEiJ_T0091111.1 MGP_CASTEiJ_G0033285.1 mouse_genomes_project 8 127331075 127359583 - MGP_CASTEiJ_P0091111 2310022B05Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0088268.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10059204 10065529 + MGP_CASTEiJ_P0088268 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088269.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10059225 10203364 + MGP_CASTEiJ_P0088269 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088270.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10059346 10075507 + Mcf2l protein_coding processed_transcript MGP_CASTEiJ_T0088271.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10100913 10205219 + MGP_CASTEiJ_P0088271 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088272.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10101550 10204823 + MGP_CASTEiJ_P0088272 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088273.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10101568 10176591 + Mcf2l protein_coding processed_transcript MGP_CASTEiJ_T0088274.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10101632 10203620 + MGP_CASTEiJ_P0088274 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088275.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10113269 10202542 + MGP_CASTEiJ_P0088275 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088276.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10134374 10172530 + Mcf2l protein_coding retained_intron MGP_CASTEiJ_T0088277.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10134414 10198387 + MGP_CASTEiJ_P0088277 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088278.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10134575 10203178 + MGP_CASTEiJ_P0088278 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088279.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10135878 10203586 + MGP_CASTEiJ_P0088279 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088280.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10135946 10204815 + MGP_CASTEiJ_P0088280 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088281.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10168655 10201834 + MGP_CASTEiJ_P0088281 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088282.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10168660 10195888 + MGP_CASTEiJ_P0088282 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088283.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10168675 10204819 + MGP_CASTEiJ_P0088283 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088284.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10195835 10204841 + MGP_CASTEiJ_P0088284 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088285.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10195851 10202459 + MGP_CASTEiJ_P0088285 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088286.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10196159 10201805 + MGP_CASTEiJ_P0088286 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088287.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10197403 10199729 + Mcf2l protein_coding retained_intron MGP_CASTEiJ_T0088288.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10197919 10203310 + MGP_CASTEiJ_P0088288 Mcf2l protein_coding protein_coding MGP_CASTEiJ_T0088289.1 MGP_CASTEiJ_G0032383.1 mouse_genomes_project 8 10201535 10203318 + Mcf2l protein_coding retained_intron MGP_CASTEiJ_T0088228.1 MGP_CASTEiJ_G0032373.1 mouse_genomes_project 8 8703145 8730288 - MGP_CASTEiJ_P0088228 Ankrd10 protein_coding protein_coding MGP_CASTEiJ_T0088229.1 MGP_CASTEiJ_G0032373.1 mouse_genomes_project 8 8705753 8730288 - MGP_CASTEiJ_P0088229 Ankrd10 protein_coding protein_coding MGP_CASTEiJ_T0008845.1 MGP_CASTEiJ_G0007129.1 mouse_genomes_project 8 21957341 21974890 + Gm26714 lincRNA lincRNA MGP_CASTEiJ_T0091209.1 MGP_CASTEiJ_G0033314.1 mouse_genomes_project 8 132115116 132117680 - MGP_CASTEiJ_P0091209 Gm10999 protein_coding protein_coding MGP_CASTEiJ_T0008928.1 MGP_CASTEiJ_G0007190.1 mouse_genomes_project 8 92750543 92750978 - lincRNA lincRNA MGP_CASTEiJ_T0010712.1 MGP_CASTEiJ_G0008900.1 mouse_genomes_project 8 123009432 123009491 + Mir7687 miRNA miRNA MGP_CASTEiJ_T0015345.1 MGP_CASTEiJ_G0013508.1 mouse_genomes_project 8 10206254 10206524 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010634.1 MGP_CASTEiJ_G0008822.1 mouse_genomes_project 8 6703304 6703457 - miRNA miRNA MGP_CASTEiJ_T0015377.1 MGP_CASTEiJ_G0013540.1 mouse_genomes_project 8 73313167 73313650 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090536.1 MGP_CASTEiJ_G0033120.1 mouse_genomes_project 8 111091231 111095248 - MGP_CASTEiJ_P0090536 Hp protein_coding protein_coding MGP_CASTEiJ_T0101308.1 MGP_CASTEiJ_G0038221.1 mouse_genomes_project 8 47753301 47753433 - Gm25830 snoRNA snoRNA MGP_CASTEiJ_T0008967.1 MGP_CASTEiJ_G0007219.1 mouse_genomes_project 8 124441888 124442715 - lincRNA lincRNA MGP_CASTEiJ_T0089616.1 MGP_CASTEiJ_G0032813.1 mouse_genomes_project 8 75948282 75948983 - MGP_CASTEiJ_P0089616 protein_coding protein_coding MGP_CASTEiJ_T0010687.1 MGP_CASTEiJ_G0008875.1 mouse_genomes_project 8 89201661 89201756 + Mir8110 miRNA miRNA MGP_CASTEiJ_T0088420.1 MGP_CASTEiJ_G0032425.1 mouse_genomes_project 8 16459684 16462821 - MGP_CASTEiJ_P0088420 Defb38 protein_coding protein_coding MGP_CASTEiJ_T0089562.1 MGP_CASTEiJ_G0032791.1 mouse_genomes_project 8 71808015 71812116 + MGP_CASTEiJ_P0089562 Fam32a protein_coding protein_coding MGP_CASTEiJ_T0090448.1 MGP_CASTEiJ_G0033088.1 mouse_genomes_project 8 107413219 107419875 - MGP_CASTEiJ_P0090448 Esrp2 protein_coding protein_coding MGP_CASTEiJ_T0090449.1 MGP_CASTEiJ_G0033088.1 mouse_genomes_project 8 107415125 107419714 - MGP_CASTEiJ_P0090449 Esrp2 protein_coding protein_coding MGP_CASTEiJ_T0090450.1 MGP_CASTEiJ_G0033088.1 mouse_genomes_project 8 107415628 107415976 - Esrp2 protein_coding processed_transcript MGP_CASTEiJ_T0090451.1 MGP_CASTEiJ_G0033088.1 mouse_genomes_project 8 107415715 107417625 - Esrp2 protein_coding retained_intron MGP_CASTEiJ_T0090452.1 MGP_CASTEiJ_G0033088.1 mouse_genomes_project 8 107416168 107417029 - Esrp2 protein_coding retained_intron MGP_CASTEiJ_T0090453.1 MGP_CASTEiJ_G0033088.1 mouse_genomes_project 8 107416428 107417029 - Esrp2 protein_coding retained_intron MGP_CASTEiJ_T0090454.1 MGP_CASTEiJ_G0033088.1 mouse_genomes_project 8 107416702 107417997 - Esrp2 protein_coding retained_intron MGP_CASTEiJ_T0090455.1 MGP_CASTEiJ_G0033088.1 mouse_genomes_project 8 107416859 107417842 - Esrp2 protein_coding retained_intron MGP_CASTEiJ_T0090456.1 MGP_CASTEiJ_G0033088.1 mouse_genomes_project 8 107419083 107419586 - Esrp2 protein_coding retained_intron MGP_CASTEiJ_T0088324.1 MGP_CASTEiJ_G0032393.1 mouse_genomes_project 8 10490998 10531009 + MGP_CASTEiJ_P0088324 Tmco3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088325.1 MGP_CASTEiJ_G0032393.1 mouse_genomes_project 8 10491426 10533056 + MGP_CASTEiJ_P0088325 Tmco3 protein_coding protein_coding MGP_CASTEiJ_T0088372.1 MGP_CASTEiJ_G0032412.1 mouse_genomes_project 8 12075311 12077391 - MGP_CASTEiJ_P0088372 protein_coding protein_coding MGP_CASTEiJ_T0090726.1 MGP_CASTEiJ_G0033180.1 mouse_genomes_project 8 119102813 119114276 - MGP_CASTEiJ_P0090726 1700030J22Rik protein_coding protein_coding MGP_CASTEiJ_T0015382.1 MGP_CASTEiJ_G0013545.1 mouse_genomes_project 8 75843654 75844662 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0090270.1 MGP_CASTEiJ_G0033016.1 mouse_genomes_project 8 105214188 105259662 + MGP_CASTEiJ_P0090270 Cdh5 protein_coding protein_coding MGP_CASTEiJ_T0090271.1 MGP_CASTEiJ_G0033016.1 mouse_genomes_project 8 105239548 105256621 + MGP_CASTEiJ_P0090271 Cdh5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088475.1 MGP_CASTEiJ_G0032466.1 mouse_genomes_project 8 19826291 19850812 - MGP_CASTEiJ_P0088475 Slc25a15 protein_coding protein_coding MGP_CASTEiJ_T0088628.1 MGP_CASTEiJ_G0032511.1 mouse_genomes_project 8 23653918 23759104 - MGP_CASTEiJ_P0088628 Hook3 protein_coding protein_coding MGP_CASTEiJ_T0088629.1 MGP_CASTEiJ_G0032511.1 mouse_genomes_project 8 23658221 23759138 - MGP_CASTEiJ_P0088629 Hook3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0088630.1 MGP_CASTEiJ_G0032511.1 mouse_genomes_project 8 23674403 23707621 - MGP_CASTEiJ_P0088630 Hook3 protein_coding protein_coding MGP_CASTEiJ_T0088631.1 MGP_CASTEiJ_G0032511.1 mouse_genomes_project 8 23674412 23681257 - Hook3 protein_coding retained_intron MGP_CASTEiJ_T0090358.1 MGP_CASTEiJ_G0033052.1 mouse_genomes_project 8 106535267 106537974 + MGP_CASTEiJ_P0090358 Tmem208 protein_coding protein_coding MGP_CASTEiJ_T0090359.1 MGP_CASTEiJ_G0033052.1 mouse_genomes_project 8 106535275 106537972 + MGP_CASTEiJ_P0090359 Tmem208 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090360.1 MGP_CASTEiJ_G0033052.1 mouse_genomes_project 8 106535301 106537969 + MGP_CASTEiJ_P0090360 Tmem208 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0090361.1 MGP_CASTEiJ_G0033052.1 mouse_genomes_project 8 106535308 106545385 + MGP_CASTEiJ_P0090361 Tmem208 protein_coding protein_coding MGP_CASTEiJ_T0090362.1 MGP_CASTEiJ_G0033052.1 mouse_genomes_project 8 106535368 106544967 + MGP_CASTEiJ_P0090362 Tmem208 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0010643.1 MGP_CASTEiJ_G0008831.1 mouse_genomes_project 8 17034724 17034814 - Gm27852 miRNA miRNA MGP_CASTEiJ_T0002272.1 MGP_CASTEiJ_G0002190.1 mouse_genomes_project 8 124539024 124539826 - TEC TEC MGP_CASTEiJ_T0015399.1 MGP_CASTEiJ_G0013562.1 mouse_genomes_project 8 96124988 96126426 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011376.1 MGP_CASTEiJ_G0009564.1 mouse_genomes_project 8 685910 686225 - Gm23886 misc_RNA misc_RNA MGP_CASTEiJ_T0010693.1 MGP_CASTEiJ_G0008881.1 mouse_genomes_project 8 105860917 105860992 - Gm44328 miRNA miRNA MGP_CASTEiJ_T0089598.1 MGP_CASTEiJ_G0032807.1 mouse_genomes_project 8 74522142 74560038 + MGP_CASTEiJ_P0089598 Hmgxb4 protein_coding protein_coding MGP_CASTEiJ_T0089599.1 MGP_CASTEiJ_G0032807.1 mouse_genomes_project 8 74522411 74559977 + MGP_CASTEiJ_P0089599 Hmgxb4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0089600.1 MGP_CASTEiJ_G0032807.1 mouse_genomes_project 8 74522465 74528598 + Hmgxb4 protein_coding processed_transcript MGP_CASTEiJ_T0089601.1 MGP_CASTEiJ_G0032807.1 mouse_genomes_project 8 74522465 74560044 + MGP_CASTEiJ_P0089601 Hmgxb4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0089602.1 MGP_CASTEiJ_G0032807.1 mouse_genomes_project 8 74522477 74528020 + Hmgxb4 protein_coding processed_transcript MGP_CASTEiJ_T0089603.1 MGP_CASTEiJ_G0032807.1 mouse_genomes_project 8 74522498 74529584 + Hmgxb4 protein_coding retained_intron MGP_CASTEiJ_T0089604.1 MGP_CASTEiJ_G0032807.1 mouse_genomes_project 8 74545819 74559979 + MGP_CASTEiJ_P0089604 Hmgxb4 protein_coding protein_coding MGP_CASTEiJ_T0089605.1 MGP_CASTEiJ_G0032807.1 mouse_genomes_project 8 74552654 74553880 + Hmgxb4 protein_coding retained_intron MGP_CASTEiJ_T0089954.1 MGP_CASTEiJ_G0032910.1 mouse_genomes_project 8 85136014 85138244 + MGP_CASTEiJ_P0089954 Wdr83os protein_coding protein_coding MGP_CASTEiJ_T0089955.1 MGP_CASTEiJ_G0032910.1 mouse_genomes_project 8 85136247 85138244 + Wdr83os protein_coding retained_intron MGP_CASTEiJ_T0089956.1 MGP_CASTEiJ_G0032910.1 mouse_genomes_project 8 85136264 85138237 + MGP_CASTEiJ_P0089956 Wdr83os protein_coding protein_coding MGP_CASTEiJ_T0090059.1 MGP_CASTEiJ_G0032947.1 mouse_genomes_project 8 91399041 91418143 - MGP_CASTEiJ_P0090059 Aktip protein_coding protein_coding MGP_CASTEiJ_T0090063.1 MGP_CASTEiJ_G0032947.1 mouse_genomes_project 8 91410553 91420723 - MGP_CASTEiJ_P0090063 Aktip protein_coding protein_coding MGP_CASTEiJ_T0090064.1 MGP_CASTEiJ_G0032947.1 mouse_genomes_project 8 91410553 91421246 - MGP_CASTEiJ_P0090064 Aktip protein_coding protein_coding MGP_CASTEiJ_T0090065.1 MGP_CASTEiJ_G0032947.1 mouse_genomes_project 8 91411502 91420804 - MGP_CASTEiJ_P0090065 Aktip protein_coding protein_coding MGP_CASTEiJ_T0090066.1 MGP_CASTEiJ_G0032947.1 mouse_genomes_project 8 91411664 91420808 - MGP_CASTEiJ_P0090066 Aktip protein_coding protein_coding MGP_CASTEiJ_T0090067.1 MGP_CASTEiJ_G0032947.1 mouse_genomes_project 8 91418076 91418883 - Aktip protein_coding processed_transcript MGP_CASTEiJ_T0088193.1 MGP_CASTEiJ_G0032354.1 mouse_genomes_project 8 1452900 1470085 + MGP_CASTEiJ_P0088193 Zfp958 protein_coding protein_coding MGP_CASTEiJ_T0088194.1 MGP_CASTEiJ_G0032354.1 mouse_genomes_project 8 1466374 1469916 + MGP_CASTEiJ_P0088194 Zfp958 protein_coding protein_coding MGP_CASTEiJ_T0089137.1 MGP_CASTEiJ_G0032664.1 mouse_genomes_project 8 65725162 65738095 - Tma16 protein_coding retained_intron MGP_CASTEiJ_T0089138.1 MGP_CASTEiJ_G0032664.1 mouse_genomes_project 8 65726998 65738117 - MGP_CASTEiJ_P0089138 Tma16 protein_coding protein_coding MGP_CASTEiJ_T0089139.1 MGP_CASTEiJ_G0032664.1 mouse_genomes_project 8 65732995 65738128 - Tma16 protein_coding retained_intron MGP_CASTEiJ_T0089530.1 MGP_CASTEiJ_G0032779.1 mouse_genomes_project 8 71496592 71505275 + MGP_CASTEiJ_P0089530 Zfp882 protein_coding protein_coding MGP_CASTEiJ_T0089531.1 MGP_CASTEiJ_G0032779.1 mouse_genomes_project 8 71496641 71501561 + MGP_CASTEiJ_P0089531 Zfp882 protein_coding protein_coding MGP_CASTEiJ_T0089532.1 MGP_CASTEiJ_G0032779.1 mouse_genomes_project 8 71496889 71501565 + MGP_CASTEiJ_P0089532 Zfp882 protein_coding protein_coding MGP_CASTEiJ_T0033294.1 MGP_CASTEiJ_G0018737.1 mouse_genomes_project 11 120621501 120647307 - MGP_CASTEiJ_P0033294 Rhbdf2 protein_coding protein_coding MGP_CASTEiJ_T0033295.1 MGP_CASTEiJ_G0018737.1 mouse_genomes_project 11 120621505 120650050 - MGP_CASTEiJ_P0033295 Rhbdf2 protein_coding protein_coding MGP_CASTEiJ_T0033296.1 MGP_CASTEiJ_G0018737.1 mouse_genomes_project 11 120624398 120625897 - Rhbdf2 protein_coding processed_transcript MGP_CASTEiJ_T0033297.1 MGP_CASTEiJ_G0018737.1 mouse_genomes_project 11 120626535 120647354 - Rhbdf2 protein_coding retained_intron MGP_CASTEiJ_T0028432.1 MGP_CASTEiJ_G0017604.1 mouse_genomes_project 11 52391340 52409565 + MGP_CASTEiJ_P0028432 Zcchc10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028433.1 MGP_CASTEiJ_G0017604.1 mouse_genomes_project 11 52391366 52399807 + MGP_CASTEiJ_P0028433 Zcchc10 protein_coding protein_coding MGP_CASTEiJ_T0028434.1 MGP_CASTEiJ_G0017604.1 mouse_genomes_project 11 52394105 52398987 + MGP_CASTEiJ_P0028434 Zcchc10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027318.1 MGP_CASTEiJ_G0017332.1 mouse_genomes_project 11 3175472 3177075 + MGP_CASTEiJ_P0027318 A730071L15Rik protein_coding protein_coding MGP_CASTEiJ_T0029761.1 MGP_CASTEiJ_G0017916.1 mouse_genomes_project 11 70835079 70836147 + Rnf167 protein_coding processed_transcript MGP_CASTEiJ_T0029762.1 MGP_CASTEiJ_G0017916.1 mouse_genomes_project 11 70835080 70839393 + MGP_CASTEiJ_P0029762 Rnf167 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029763.1 MGP_CASTEiJ_G0017916.1 mouse_genomes_project 11 70835080 70839393 + MGP_CASTEiJ_P0029763 Rnf167 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029764.1 MGP_CASTEiJ_G0017916.1 mouse_genomes_project 11 70835131 70852100 + MGP_CASTEiJ_P0029764 Rnf167 protein_coding protein_coding MGP_CASTEiJ_T0029765.1 MGP_CASTEiJ_G0017916.1 mouse_genomes_project 11 70835131 70852090 + MGP_CASTEiJ_P0029765 Rnf167 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029766.1 MGP_CASTEiJ_G0017916.1 mouse_genomes_project 11 70835399 70837759 + MGP_CASTEiJ_P0029766 Rnf167 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029767.1 MGP_CASTEiJ_G0017916.1 mouse_genomes_project 11 70835405 70852088 + Rnf167 protein_coding retained_intron MGP_CASTEiJ_T0029768.1 MGP_CASTEiJ_G0017916.1 mouse_genomes_project 11 70835413 70836295 + Rnf167 protein_coding retained_intron MGP_CASTEiJ_T0029769.1 MGP_CASTEiJ_G0017916.1 mouse_genomes_project 11 70835798 70838325 + Rnf167 protein_coding retained_intron MGP_CASTEiJ_T0029770.1 MGP_CASTEiJ_G0017916.1 mouse_genomes_project 11 70836115 70839077 + Rnf167 protein_coding retained_intron MGP_CASTEiJ_T0029771.1 MGP_CASTEiJ_G0017916.1 mouse_genomes_project 11 70837929 70838325 + Rnf167 protein_coding retained_intron MGP_CASTEiJ_T0003097.1 MGP_CASTEiJ_G0002883.1 mouse_genomes_project 11 63895486 63899267 + 2810001G20Rik antisense antisense MGP_CASTEiJ_T0003098.1 MGP_CASTEiJ_G0002883.1 mouse_genomes_project 11 63895584 63899267 + 2810001G20Rik antisense antisense MGP_CASTEiJ_T0012217.1 MGP_CASTEiJ_G0010380.1 mouse_genomes_project 11 38038332 38038975 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012146.1 MGP_CASTEiJ_G0010309.1 mouse_genomes_project 11 13737688 13738770 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101981.1 MGP_CASTEiJ_G0038706.1 mouse_genomes_project 11 49812657 49813634 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000305.1 MGP_CASTEiJ_G0000254.1 mouse_genomes_project 11 42897050 42897103 - mt-Tk Mt_tRNA Mt_tRNA MGP_CASTEiJ_T0028098.1 MGP_CASTEiJ_G0017515.1 mouse_genomes_project 11 45170454 45188645 + MGP_CASTEiJ_P0028098 BC053393 protein_coding protein_coding MGP_CASTEiJ_T0032389.1 MGP_CASTEiJ_G0018555.1 mouse_genomes_project 11 105812911 105836832 - MGP_CASTEiJ_P0032389 Kif18b protein_coding protein_coding MGP_CASTEiJ_T0032390.1 MGP_CASTEiJ_G0018555.1 mouse_genomes_project 11 105826068 105836796 - Kif18b protein_coding processed_transcript MGP_CASTEiJ_T0032710.1 MGP_CASTEiJ_G0018622.1 mouse_genomes_project 11 110352803 110376769 - MGP_CASTEiJ_P0032710 Nol11 protein_coding protein_coding MGP_CASTEiJ_T0032711.1 MGP_CASTEiJ_G0018622.1 mouse_genomes_project 11 110352803 110376769 - MGP_CASTEiJ_P0032711 Nol11 protein_coding protein_coding MGP_CASTEiJ_T0032712.1 MGP_CASTEiJ_G0018622.1 mouse_genomes_project 11 110353528 110354615 - Nol11 protein_coding processed_transcript MGP_CASTEiJ_T0032713.1 MGP_CASTEiJ_G0018622.1 mouse_genomes_project 11 110365884 110372176 - Nol11 protein_coding processed_transcript MGP_CASTEiJ_T0032714.1 MGP_CASTEiJ_G0018622.1 mouse_genomes_project 11 110373929 110376740 - Nol11 protein_coding processed_transcript MGP_CASTEiJ_T0032082.1 MGP_CASTEiJ_G0018502.1 mouse_genomes_project 11 104104861 104115408 + MGP_CASTEiJ_P0032082 G6pc protein_coding protein_coding MGP_CASTEiJ_T0028188.1 MGP_CASTEiJ_G0017544.1 mouse_genomes_project 11 48159354 48160290 + MGP_CASTEiJ_P0028188 Olfr1387 protein_coding protein_coding MGP_CASTEiJ_T0027445.1 MGP_CASTEiJ_G0017363.1 mouse_genomes_project 11 9071913 9167347 - MGP_CASTEiJ_P0027445 Ddc protein_coding protein_coding MGP_CASTEiJ_T0027446.1 MGP_CASTEiJ_G0017363.1 mouse_genomes_project 11 9071913 9167447 - MGP_CASTEiJ_P0027446 Ddc protein_coding protein_coding MGP_CASTEiJ_T0027447.1 MGP_CASTEiJ_G0017363.1 mouse_genomes_project 11 9071915 9081822 - Ddc protein_coding processed_transcript MGP_CASTEiJ_T0027448.1 MGP_CASTEiJ_G0017363.1 mouse_genomes_project 11 9071915 9159972 - MGP_CASTEiJ_P0027448 Ddc protein_coding protein_coding MGP_CASTEiJ_T0027449.1 MGP_CASTEiJ_G0017363.1 mouse_genomes_project 11 9078238 9100004 - Ddc protein_coding processed_transcript MGP_CASTEiJ_T0027450.1 MGP_CASTEiJ_G0017363.1 mouse_genomes_project 11 9108696 9128857 - Ddc protein_coding processed_transcript MGP_CASTEiJ_T0027451.1 MGP_CASTEiJ_G0017363.1 mouse_genomes_project 11 9110385 9159933 - MGP_CASTEiJ_P0027451 Ddc protein_coding protein_coding MGP_CASTEiJ_T0027452.1 MGP_CASTEiJ_G0017363.1 mouse_genomes_project 11 9125784 9159965 - Ddc protein_coding processed_transcript MGP_CASTEiJ_T0027453.1 MGP_CASTEiJ_G0017363.1 mouse_genomes_project 11 9140281 9148683 - Ddc protein_coding processed_transcript MGP_CASTEiJ_T0027454.1 MGP_CASTEiJ_G0017363.1 mouse_genomes_project 11 9142221 9159962 - Ddc protein_coding processed_transcript MGP_CASTEiJ_T0033193.1 MGP_CASTEiJ_G0018719.1 mouse_genomes_project 11 120094897 120104177 - MGP_CASTEiJ_P0033193 Trim65 protein_coding protein_coding MGP_CASTEiJ_T0033194.1 MGP_CASTEiJ_G0018719.1 mouse_genomes_project 11 120097773 120104181 - Trim65 protein_coding processed_transcript MGP_CASTEiJ_T0033195.1 MGP_CASTEiJ_G0018719.1 mouse_genomes_project 11 120097773 120104179 - MGP_CASTEiJ_P0033195 Trim65 protein_coding protein_coding MGP_CASTEiJ_T0000813.1 MGP_CASTEiJ_G0000753.1 mouse_genomes_project 11 109028419 109029942 + TEC TEC MGP_CASTEiJ_T0032819.1 MGP_CASTEiJ_G0018645.1 mouse_genomes_project 11 113415337 113494425 - MGP_CASTEiJ_P0032819 Abca8a protein_coding protein_coding MGP_CASTEiJ_T0032820.1 MGP_CASTEiJ_G0018645.1 mouse_genomes_project 11 113415339 113494384 - MGP_CASTEiJ_P0032820 Abca8a protein_coding protein_coding MGP_CASTEiJ_T0032821.1 MGP_CASTEiJ_G0018645.1 mouse_genomes_project 11 113415339 113494384 - MGP_CASTEiJ_P0032821 Abca8a protein_coding protein_coding MGP_CASTEiJ_T0032822.1 MGP_CASTEiJ_G0018645.1 mouse_genomes_project 11 113416566 113419810 - Abca8a protein_coding processed_transcript MGP_CASTEiJ_T0032823.1 MGP_CASTEiJ_G0018645.1 mouse_genomes_project 11 113456990 113459782 - Abca8a protein_coding processed_transcript MGP_CASTEiJ_T0032824.1 MGP_CASTEiJ_G0018645.1 mouse_genomes_project 11 113465122 113466619 - Abca8a protein_coding processed_transcript MGP_CASTEiJ_T0032825.1 MGP_CASTEiJ_G0018645.1 mouse_genomes_project 11 113466552 113473301 - MGP_CASTEiJ_P0032825 Abca8a protein_coding protein_coding MGP_CASTEiJ_T0032826.1 MGP_CASTEiJ_G0018645.1 mouse_genomes_project 11 113481891 113494384 - MGP_CASTEiJ_P0032826 Abca8a protein_coding protein_coding MGP_CASTEiJ_T0027251.1 MGP_CASTEiJ_G0017317.1 mouse_genomes_project 11 2451923 2461861 + MGP_CASTEiJ_P0027251 Xbp1 protein_coding protein_coding MGP_CASTEiJ_T0027252.1 MGP_CASTEiJ_G0017317.1 mouse_genomes_project 11 2452189 2460692 + MGP_CASTEiJ_P0027252 Xbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027253.1 MGP_CASTEiJ_G0017317.1 mouse_genomes_project 11 2452269 2459967 + Xbp1 protein_coding retained_intron MGP_CASTEiJ_T0027254.1 MGP_CASTEiJ_G0017317.1 mouse_genomes_project 11 2452923 2460888 + MGP_CASTEiJ_P0027254 Xbp1 protein_coding protein_coding MGP_CASTEiJ_T0027255.1 MGP_CASTEiJ_G0017317.1 mouse_genomes_project 11 2453183 2461050 + MGP_CASTEiJ_P0027255 Xbp1 protein_coding protein_coding MGP_CASTEiJ_T0003247.1 MGP_CASTEiJ_G0003002.1 mouse_genomes_project 11 124212058 124218962 - Gm11767 antisense antisense MGP_CASTEiJ_T0027161.1 MGP_CASTEiJ_G0017302.1 mouse_genomes_project 11 1588005 1590366 - MGP_CASTEiJ_P0027161 Uqcr10 protein_coding protein_coding MGP_CASTEiJ_T0027162.1 MGP_CASTEiJ_G0017302.1 mouse_genomes_project 11 1588007 1590358 - Uqcr10 protein_coding processed_transcript MGP_CASTEiJ_T0027163.1 MGP_CASTEiJ_G0017302.1 mouse_genomes_project 11 1588014 1590077 - Uqcr10 protein_coding processed_transcript MGP_CASTEiJ_T0028856.1 MGP_CASTEiJ_G0017724.1 mouse_genomes_project 11 59757964 59894365 - MGP_CASTEiJ_P0028856 Tom1l2 protein_coding protein_coding MGP_CASTEiJ_T0028857.1 MGP_CASTEiJ_G0017724.1 mouse_genomes_project 11 59757965 59771807 - Tom1l2 protein_coding processed_transcript MGP_CASTEiJ_T0028858.1 MGP_CASTEiJ_G0017724.1 mouse_genomes_project 11 59757965 59894365 - MGP_CASTEiJ_P0028858 Tom1l2 protein_coding protein_coding MGP_CASTEiJ_T0028859.1 MGP_CASTEiJ_G0017724.1 mouse_genomes_project 11 59757965 59894365 - MGP_CASTEiJ_P0028859 Tom1l2 protein_coding protein_coding MGP_CASTEiJ_T0028860.1 MGP_CASTEiJ_G0017724.1 mouse_genomes_project 11 59757965 59894365 - MGP_CASTEiJ_P0028860 Tom1l2 protein_coding protein_coding MGP_CASTEiJ_T0028861.1 MGP_CASTEiJ_G0017724.1 mouse_genomes_project 11 59760854 59762600 - Tom1l2 protein_coding processed_transcript MGP_CASTEiJ_T0028862.1 MGP_CASTEiJ_G0017724.1 mouse_genomes_project 11 59761153 59778201 - MGP_CASTEiJ_P0028862 Tom1l2 protein_coding protein_coding MGP_CASTEiJ_T0028863.1 MGP_CASTEiJ_G0017724.1 mouse_genomes_project 11 59761153 59777689 - MGP_CASTEiJ_P0028863 Tom1l2 protein_coding protein_coding MGP_CASTEiJ_T0028864.1 MGP_CASTEiJ_G0017724.1 mouse_genomes_project 11 59773107 59894365 - MGP_CASTEiJ_P0028864 Tom1l2 protein_coding protein_coding MGP_CASTEiJ_T0028865.1 MGP_CASTEiJ_G0017724.1 mouse_genomes_project 11 59773474 59894365 - MGP_CASTEiJ_P0028865 Tom1l2 protein_coding protein_coding MGP_CASTEiJ_T0028866.1 MGP_CASTEiJ_G0017724.1 mouse_genomes_project 11 59786676 59894365 - Tom1l2 protein_coding processed_transcript MGP_CASTEiJ_T0031326.1 MGP_CASTEiJ_G0018289.1 mouse_genomes_project 11 97345796 97389555 - MGP_CASTEiJ_P0031326 Kat7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031327.1 MGP_CASTEiJ_G0018289.1 mouse_genomes_project 11 97348245 97389680 - MGP_CASTEiJ_P0031327 Kat7 protein_coding protein_coding MGP_CASTEiJ_T0031328.1 MGP_CASTEiJ_G0018289.1 mouse_genomes_project 11 97348245 97389725 - MGP_CASTEiJ_P0031328 Kat7 protein_coding protein_coding MGP_CASTEiJ_T0031329.1 MGP_CASTEiJ_G0018289.1 mouse_genomes_project 11 97348245 97389081 - MGP_CASTEiJ_P0031329 Kat7 protein_coding protein_coding MGP_CASTEiJ_T0031330.1 MGP_CASTEiJ_G0018289.1 mouse_genomes_project 11 97348245 97389081 - MGP_CASTEiJ_P0031330 Kat7 protein_coding protein_coding MGP_CASTEiJ_T0031331.1 MGP_CASTEiJ_G0018289.1 mouse_genomes_project 11 97348245 97389725 - MGP_CASTEiJ_P0031331 Kat7 protein_coding protein_coding MGP_CASTEiJ_T0031332.1 MGP_CASTEiJ_G0018289.1 mouse_genomes_project 11 97349309 97355886 - MGP_CASTEiJ_P0031332 Kat7 protein_coding protein_coding MGP_CASTEiJ_T0031333.1 MGP_CASTEiJ_G0018289.1 mouse_genomes_project 11 97355893 97389668 - Kat7 protein_coding processed_transcript MGP_CASTEiJ_T0031334.1 MGP_CASTEiJ_G0018289.1 mouse_genomes_project 11 97358129 97366228 - Kat7 protein_coding processed_transcript MGP_CASTEiJ_T0031335.1 MGP_CASTEiJ_G0018289.1 mouse_genomes_project 11 97381076 97389687 - Kat7 protein_coding processed_transcript MGP_CASTEiJ_T0031336.1 MGP_CASTEiJ_G0018289.1 mouse_genomes_project 11 97382725 97388992 - Kat7 protein_coding processed_transcript MGP_CASTEiJ_T0031337.1 MGP_CASTEiJ_G0018289.1 mouse_genomes_project 11 97385591 97389048 - Kat7 protein_coding processed_transcript MGP_CASTEiJ_T0029131.1 MGP_CASTEiJ_G0017773.1 mouse_genomes_project 11 62593821 62627596 + MGP_CASTEiJ_P0029131 Fbxw10 protein_coding protein_coding MGP_CASTEiJ_T0029132.1 MGP_CASTEiJ_G0017773.1 mouse_genomes_project 11 62593875 62627593 + MGP_CASTEiJ_P0029132 Fbxw10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029133.1 MGP_CASTEiJ_G0017773.1 mouse_genomes_project 11 62593875 62627593 + MGP_CASTEiJ_P0029133 Fbxw10 protein_coding protein_coding MGP_CASTEiJ_T0029134.1 MGP_CASTEiJ_G0017773.1 mouse_genomes_project 11 62593880 62598170 + Fbxw10 protein_coding retained_intron MGP_CASTEiJ_T0029135.1 MGP_CASTEiJ_G0017773.1 mouse_genomes_project 11 62593884 62627574 + MGP_CASTEiJ_P0029135 Fbxw10 protein_coding protein_coding MGP_CASTEiJ_T0029136.1 MGP_CASTEiJ_G0017773.1 mouse_genomes_project 11 62625008 62626884 + Fbxw10 protein_coding processed_transcript MGP_CASTEiJ_T0006172.1 MGP_CASTEiJ_G0005158.1 mouse_genomes_project 11 104371017 104371578 + Gm11635 lincRNA lincRNA MGP_CASTEiJ_T0006173.1 MGP_CASTEiJ_G0005158.1 mouse_genomes_project 11 104371103 104376180 + Gm11635 lincRNA lincRNA MGP_CASTEiJ_T0027809.1 MGP_CASTEiJ_G0017437.1 mouse_genomes_project 11 28923457 28935113 - MGP_CASTEiJ_P0027809 Chac2 protein_coding protein_coding MGP_CASTEiJ_T0027810.1 MGP_CASTEiJ_G0017437.1 mouse_genomes_project 11 28923702 28935097 - MGP_CASTEiJ_P0027810 Chac2 protein_coding protein_coding MGP_CASTEiJ_T0027493.1 MGP_CASTEiJ_G0017371.1 mouse_genomes_project 11 14365786 14369204 + MGP_CASTEiJ_P0027493 Cnrip1 protein_coding protein_coding MGP_CASTEiJ_T0027494.1 MGP_CASTEiJ_G0017371.1 mouse_genomes_project 11 14365970 14393342 + MGP_CASTEiJ_P0027494 Cnrip1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027495.1 MGP_CASTEiJ_G0017371.1 mouse_genomes_project 11 14366003 14368442 + Cnrip1 protein_coding retained_intron MGP_CASTEiJ_T0027496.1 MGP_CASTEiJ_G0017371.1 mouse_genomes_project 11 14366018 14393578 + MGP_CASTEiJ_P0027496 Cnrip1 protein_coding protein_coding MGP_CASTEiJ_T0099286.1 MGP_CASTEiJ_G0036199.1 mouse_genomes_project 11 119506672 119506779 + Gm25364 snRNA snRNA MGP_CASTEiJ_T0102016.1 MGP_CASTEiJ_G0038741.1 mouse_genomes_project 11 111968824 111969783 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0012322.1 MGP_CASTEiJ_G0010485.1 mouse_genomes_project 11 78442626 78443630 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033900.1 MGP_CASTEiJ_G0018851.1 mouse_genomes_project 11 125812533 125829760 + MGP_CASTEiJ_P0033900 Fn3k protein_coding protein_coding MGP_CASTEiJ_T0033901.1 MGP_CASTEiJ_G0018851.1 mouse_genomes_project 11 125812587 125820721 + MGP_CASTEiJ_P0033901 Fn3k protein_coding protein_coding MGP_CASTEiJ_T0033902.1 MGP_CASTEiJ_G0018851.1 mouse_genomes_project 11 125812588 125821245 + MGP_CASTEiJ_P0033902 Fn3k protein_coding protein_coding MGP_CASTEiJ_T0028331.1 MGP_CASTEiJ_G0017581.1 mouse_genomes_project 11 50139617 50151525 + MGP_CASTEiJ_P0028331 Clk4 protein_coding protein_coding MGP_CASTEiJ_T0028332.1 MGP_CASTEiJ_G0017581.1 mouse_genomes_project 11 50139617 50149917 + MGP_CASTEiJ_P0028332 Clk4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028333.1 MGP_CASTEiJ_G0017581.1 mouse_genomes_project 11 50141013 50158975 + MGP_CASTEiJ_P0028333 Clk4 protein_coding protein_coding MGP_CASTEiJ_T0028334.1 MGP_CASTEiJ_G0017581.1 mouse_genomes_project 11 50141049 50153154 + MGP_CASTEiJ_P0028334 Clk4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028335.1 MGP_CASTEiJ_G0017581.1 mouse_genomes_project 11 50141061 50145387 + Clk4 protein_coding retained_intron MGP_CASTEiJ_T0028336.1 MGP_CASTEiJ_G0017581.1 mouse_genomes_project 11 50141063 50150263 + Clk4 protein_coding retained_intron MGP_CASTEiJ_T0028337.1 MGP_CASTEiJ_G0017581.1 mouse_genomes_project 11 50141068 50151521 + MGP_CASTEiJ_P0028337 Clk4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028338.1 MGP_CASTEiJ_G0017581.1 mouse_genomes_project 11 50141073 50149958 + Clk4 protein_coding retained_intron MGP_CASTEiJ_T0028339.1 MGP_CASTEiJ_G0017581.1 mouse_genomes_project 11 50141085 50158977 + MGP_CASTEiJ_P0028339 Clk4 protein_coding protein_coding MGP_CASTEiJ_T0028340.1 MGP_CASTEiJ_G0017581.1 mouse_genomes_project 11 50149896 50155107 + Clk4 protein_coding retained_intron MGP_CASTEiJ_T0028341.1 MGP_CASTEiJ_G0017581.1 mouse_genomes_project 11 50151349 50158975 + MGP_CASTEiJ_P0028341 Clk4 protein_coding protein_coding MGP_CASTEiJ_T0028342.1 MGP_CASTEiJ_G0017581.1 mouse_genomes_project 11 50151510 50154132 + Clk4 protein_coding retained_intron MGP_CASTEiJ_T0028343.1 MGP_CASTEiJ_G0017581.1 mouse_genomes_project 11 50152799 50153407 + Clk4 protein_coding retained_intron MGP_CASTEiJ_T0028344.1 MGP_CASTEiJ_G0017581.1 mouse_genomes_project 11 50157319 50158410 + Clk4 protein_coding retained_intron MGP_CASTEiJ_T0031305.1 MGP_CASTEiJ_G0018283.1 mouse_genomes_project 11 97070342 97089171 + MGP_CASTEiJ_P0031305 Samd14 protein_coding protein_coding MGP_CASTEiJ_T0031306.1 MGP_CASTEiJ_G0018283.1 mouse_genomes_project 11 97070345 97084649 + Samd14 protein_coding processed_transcript MGP_CASTEiJ_T0031307.1 MGP_CASTEiJ_G0018283.1 mouse_genomes_project 11 97071951 97083104 + MGP_CASTEiJ_P0031307 Samd14 protein_coding protein_coding MGP_CASTEiJ_T0031104.1 MGP_CASTEiJ_G0018237.1 mouse_genomes_project 11 90583733 90585449 - MGP_CASTEiJ_P0031104 Gm15698 protein_coding protein_coding MGP_CASTEiJ_T0006041.1 MGP_CASTEiJ_G0005057.1 mouse_genomes_project 11 26573116 26632897 + Gm12082 lincRNA lincRNA MGP_CASTEiJ_T0030911.1 MGP_CASTEiJ_G0018195.1 mouse_genomes_project 11 87434017 87584505 - MGP_CASTEiJ_P0030911 Brip1 protein_coding protein_coding MGP_CASTEiJ_T0030912.1 MGP_CASTEiJ_G0018195.1 mouse_genomes_project 11 87578353 87584476 - Brip1 protein_coding processed_transcript MGP_CASTEiJ_T0030913.1 MGP_CASTEiJ_G0018195.1 mouse_genomes_project 11 87579028 87584478 - Brip1 protein_coding processed_transcript MGP_CASTEiJ_T0003192.1 MGP_CASTEiJ_G0002956.1 mouse_genomes_project 11 104745416 104753661 + 4930417O22Rik antisense antisense MGP_CASTEiJ_T0016545.1 MGP_CASTEiJ_G0014535.1 mouse_genomes_project 11 122656795 122659852 - Gm11748 processed_transcript processed_transcript MGP_CASTEiJ_T0033752.1 MGP_CASTEiJ_G0018822.1 mouse_genomes_project 11 124993199 124995327 - MGP_CASTEiJ_P0033752 Myadml2 protein_coding protein_coding MGP_CASTEiJ_T0033753.1 MGP_CASTEiJ_G0018822.1 mouse_genomes_project 11 124993200 124994251 - Myadml2 protein_coding processed_transcript MGP_CASTEiJ_T0009446.1 MGP_CASTEiJ_G0007634.1 mouse_genomes_project 11 68202801 68202919 + Mir6406 miRNA miRNA MGP_CASTEiJ_T0009417.1 MGP_CASTEiJ_G0007605.1 mouse_genomes_project 11 26578071 26578143 + Mir216a miRNA miRNA MGP_CASTEiJ_T0012317.1 MGP_CASTEiJ_G0010480.1 mouse_genomes_project 11 75967715 75968115 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028774.1 MGP_CASTEiJ_G0017707.1 mouse_genomes_project 11 58889183 58937990 - MGP_CASTEiJ_P0028774 Snap47 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028775.1 MGP_CASTEiJ_G0017707.1 mouse_genomes_project 11 58889184 58937987 - MGP_CASTEiJ_P0028775 Snap47 protein_coding protein_coding MGP_CASTEiJ_T0028776.1 MGP_CASTEiJ_G0017707.1 mouse_genomes_project 11 58910801 58937979 - MGP_CASTEiJ_P0028776 Snap47 protein_coding protein_coding MGP_CASTEiJ_T0028777.1 MGP_CASTEiJ_G0017707.1 mouse_genomes_project 11 58910807 58937893 - MGP_CASTEiJ_P0028777 Snap47 protein_coding protein_coding MGP_CASTEiJ_T0028778.1 MGP_CASTEiJ_G0017707.1 mouse_genomes_project 11 58923287 58937979 - MGP_CASTEiJ_P0028778 Snap47 protein_coding protein_coding MGP_CASTEiJ_T0028779.1 MGP_CASTEiJ_G0017707.1 mouse_genomes_project 11 58923509 58933899 - MGP_CASTEiJ_P0028779 Snap47 protein_coding protein_coding MGP_CASTEiJ_T0028780.1 MGP_CASTEiJ_G0017707.1 mouse_genomes_project 11 58923541 58937896 - MGP_CASTEiJ_P0028780 Snap47 protein_coding protein_coding MGP_CASTEiJ_T0028781.1 MGP_CASTEiJ_G0017707.1 mouse_genomes_project 11 58923702 58939166 - MGP_CASTEiJ_P0028781 Snap47 protein_coding protein_coding MGP_CASTEiJ_T0101989.1 MGP_CASTEiJ_G0038714.1 mouse_genomes_project 11 73985026 73985961 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0031640.1 MGP_CASTEiJ_G0018363.1 mouse_genomes_project 11 100698006 100706441 + MGP_CASTEiJ_P0031640 Ppp1r1b protein_coding protein_coding MGP_CASTEiJ_T0031641.1 MGP_CASTEiJ_G0018363.1 mouse_genomes_project 11 100699894 100706873 + Ppp1r1b protein_coding retained_intron MGP_CASTEiJ_T0031642.1 MGP_CASTEiJ_G0018363.1 mouse_genomes_project 11 100700254 100706477 + Ppp1r1b protein_coding retained_intron MGP_CASTEiJ_T0031643.1 MGP_CASTEiJ_G0018363.1 mouse_genomes_project 11 100700528 100706370 + Ppp1r1b protein_coding processed_transcript MGP_CASTEiJ_T0031644.1 MGP_CASTEiJ_G0018363.1 mouse_genomes_project 11 100703638 100706187 + Ppp1r1b protein_coding processed_transcript MGP_CASTEiJ_T0029059.1 MGP_CASTEiJ_G0017761.1 mouse_genomes_project 11 61953384 61967414 - MGP_CASTEiJ_P0029059 Zswim7 protein_coding protein_coding MGP_CASTEiJ_T0030795.1 MGP_CASTEiJ_G0018171.1 mouse_genomes_project 11 85095590 85156282 + MGP_CASTEiJ_P0030795 Hnf1b protein_coding protein_coding MGP_CASTEiJ_T0030796.1 MGP_CASTEiJ_G0018171.1 mouse_genomes_project 11 85095765 85156288 + MGP_CASTEiJ_P0030796 Hnf1b protein_coding protein_coding MGP_CASTEiJ_T0030797.1 MGP_CASTEiJ_G0018171.1 mouse_genomes_project 11 85096958 85108987 + MGP_CASTEiJ_P0030797 Hnf1b protein_coding protein_coding MGP_CASTEiJ_T0009461.1 MGP_CASTEiJ_G0007649.1 mouse_genomes_project 11 73028367 73028440 + Gm25678 miRNA miRNA MGP_CASTEiJ_T0009500.1 MGP_CASTEiJ_G0007688.1 mouse_genomes_project 11 103153563 103153631 - Mir7116 miRNA miRNA MGP_CASTEiJ_T0027658.1 MGP_CASTEiJ_G0017406.1 mouse_genomes_project 11 21224768 21241342 - MGP_CASTEiJ_P0027658 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027659.1 MGP_CASTEiJ_G0017406.1 mouse_genomes_project 11 21224932 21241350 - MGP_CASTEiJ_P0027659 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027660.1 MGP_CASTEiJ_G0017406.1 mouse_genomes_project 11 21231330 21241340 - protein_coding processed_transcript MGP_CASTEiJ_T0027661.1 MGP_CASTEiJ_G0017406.1 mouse_genomes_project 11 21231583 21241171 - protein_coding processed_transcript MGP_CASTEiJ_T0028690.1 MGP_CASTEiJ_G0017673.1 mouse_genomes_project 11 57855779 57858560 - MGP_CASTEiJ_P0028690 Olfr332 protein_coding protein_coding MGP_CASTEiJ_T0028691.1 MGP_CASTEiJ_G0017673.1 mouse_genomes_project 11 57856416 57858574 - MGP_CASTEiJ_P0028691 Olfr332 protein_coding protein_coding MGP_CASTEiJ_T0101511.1 MGP_CASTEiJ_G0038409.1 mouse_genomes_project 11 3685986 3696809 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101512.1 MGP_CASTEiJ_G0038409.1 mouse_genomes_project 11 3686205 3686655 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101513.1 MGP_CASTEiJ_G0038409.1 mouse_genomes_project 11 3686955 3695307 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101514.1 MGP_CASTEiJ_G0038409.1 mouse_genomes_project 11 3687228 3696786 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0027140.1 MGP_CASTEiJ_G0017296.1 mouse_genomes_project 11 1095865 1099137 + Osm protein_coding processed_transcript MGP_CASTEiJ_T0027141.1 MGP_CASTEiJ_G0017296.1 mouse_genomes_project 11 1095865 1100499 + MGP_CASTEiJ_P0027141 Osm protein_coding protein_coding MGP_CASTEiJ_T0027274.1 MGP_CASTEiJ_G0017323.1 mouse_genomes_project 11 2754550 2756643 - MGP_CASTEiJ_P0027274 Pgam2 protein_coding protein_coding MGP_CASTEiJ_T0030783.1 MGP_CASTEiJ_G0018165.1 mouse_genomes_project 11 84837919 84839428 - MGP_CASTEiJ_P0030783 Ccl3 protein_coding protein_coding MGP_CASTEiJ_T0027941.1 MGP_CASTEiJ_G0017475.1 mouse_genomes_project 11 33858214 33859709 - MGP_CASTEiJ_P0027941 Fbll1 protein_coding protein_coding MGP_CASTEiJ_T0099252.1 MGP_CASTEiJ_G0036165.1 mouse_genomes_project 11 80457058 80457162 + Gm23293 snRNA snRNA MGP_CASTEiJ_T0032681.1 MGP_CASTEiJ_G0018618.1 mouse_genomes_project 11 109946997 109978160 + MGP_CASTEiJ_P0032681 Cep95 protein_coding protein_coding MGP_CASTEiJ_T0032682.1 MGP_CASTEiJ_G0018618.1 mouse_genomes_project 11 109947023 109978153 + MGP_CASTEiJ_P0032682 Cep95 protein_coding protein_coding MGP_CASTEiJ_T0032683.1 MGP_CASTEiJ_G0018618.1 mouse_genomes_project 11 109947035 109949021 + Cep95 protein_coding processed_transcript MGP_CASTEiJ_T0032684.1 MGP_CASTEiJ_G0018618.1 mouse_genomes_project 11 109971668 109973142 + Cep95 protein_coding processed_transcript MGP_CASTEiJ_T0032685.1 MGP_CASTEiJ_G0018618.1 mouse_genomes_project 11 109973512 109975068 + Cep95 protein_coding processed_transcript MGP_CASTEiJ_T0032686.1 MGP_CASTEiJ_G0018618.1 mouse_genomes_project 11 109977127 109978161 + Cep95 protein_coding processed_transcript MGP_CASTEiJ_T0032687.1 MGP_CASTEiJ_G0018618.1 mouse_genomes_project 11 109977172 109979229 + MGP_CASTEiJ_P0032687 Cep95 protein_coding protein_coding MGP_CASTEiJ_T0030315.1 MGP_CASTEiJ_G0018053.1 mouse_genomes_project 11 78111723 78116395 + MGP_CASTEiJ_P0030315 Coro6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030316.1 MGP_CASTEiJ_G0018053.1 mouse_genomes_project 11 78111829 78120228 + MGP_CASTEiJ_P0030316 Coro6 protein_coding protein_coding MGP_CASTEiJ_T0030317.1 MGP_CASTEiJ_G0018053.1 mouse_genomes_project 11 78112063 78113376 + MGP_CASTEiJ_P0030317 Coro6 protein_coding protein_coding MGP_CASTEiJ_T0030318.1 MGP_CASTEiJ_G0018053.1 mouse_genomes_project 11 78112124 78119297 + MGP_CASTEiJ_P0030318 Coro6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030319.1 MGP_CASTEiJ_G0018053.1 mouse_genomes_project 11 78113256 78119361 + MGP_CASTEiJ_P0030319 Coro6 protein_coding protein_coding MGP_CASTEiJ_T0030320.1 MGP_CASTEiJ_G0018053.1 mouse_genomes_project 11 78113256 78119361 + MGP_CASTEiJ_P0030320 Coro6 protein_coding protein_coding MGP_CASTEiJ_T0030321.1 MGP_CASTEiJ_G0018053.1 mouse_genomes_project 11 78113332 78119261 + MGP_CASTEiJ_P0030321 Coro6 protein_coding protein_coding MGP_CASTEiJ_T0030322.1 MGP_CASTEiJ_G0018053.1 mouse_genomes_project 11 78113332 78119261 + MGP_CASTEiJ_P0030322 Coro6 protein_coding protein_coding MGP_CASTEiJ_T0030687.1 MGP_CASTEiJ_G0018138.1 mouse_genomes_project 11 83851625 83853217 + MGP_CASTEiJ_P0030687 Zfp830 protein_coding protein_coding MGP_CASTEiJ_T0033717.1 MGP_CASTEiJ_G0018818.1 mouse_genomes_project 11 124951900 124960897 - MGP_CASTEiJ_P0033717 Pcyt2 protein_coding protein_coding MGP_CASTEiJ_T0033718.1 MGP_CASTEiJ_G0018818.1 mouse_genomes_project 11 124953387 124960886 - MGP_CASTEiJ_P0033718 Pcyt2 protein_coding protein_coding MGP_CASTEiJ_T0033719.1 MGP_CASTEiJ_G0018818.1 mouse_genomes_project 11 124953565 124955003 - Pcyt2 protein_coding retained_intron MGP_CASTEiJ_T0033720.1 MGP_CASTEiJ_G0018818.1 mouse_genomes_project 11 124953769 124954975 - Pcyt2 protein_coding retained_intron MGP_CASTEiJ_T0033721.1 MGP_CASTEiJ_G0018818.1 mouse_genomes_project 11 124954521 124955970 - Pcyt2 protein_coding retained_intron MGP_CASTEiJ_T0033722.1 MGP_CASTEiJ_G0018818.1 mouse_genomes_project 11 124955098 124960869 - Pcyt2 protein_coding retained_intron MGP_CASTEiJ_T0033723.1 MGP_CASTEiJ_G0018818.1 mouse_genomes_project 11 124955489 124956590 - Pcyt2 protein_coding retained_intron MGP_CASTEiJ_T0033724.1 MGP_CASTEiJ_G0018818.1 mouse_genomes_project 11 124955828 124956484 - Pcyt2 protein_coding retained_intron MGP_CASTEiJ_T0033725.1 MGP_CASTEiJ_G0018818.1 mouse_genomes_project 11 124955872 124957420 - Pcyt2 protein_coding retained_intron MGP_CASTEiJ_T0033726.1 MGP_CASTEiJ_G0018818.1 mouse_genomes_project 11 124955925 124960874 - Pcyt2 protein_coding processed_transcript MGP_CASTEiJ_T0033727.1 MGP_CASTEiJ_G0018818.1 mouse_genomes_project 11 124958095 124960871 - Pcyt2 protein_coding retained_intron MGP_CASTEiJ_T0033728.1 MGP_CASTEiJ_G0018818.1 mouse_genomes_project 11 124958366 124960830 - Pcyt2 protein_coding retained_intron MGP_CASTEiJ_T0030613.1 MGP_CASTEiJ_G0018116.1 mouse_genomes_project 11 81055724 81081823 + MGP_CASTEiJ_P0030613 Adap2 protein_coding protein_coding MGP_CASTEiJ_T0030614.1 MGP_CASTEiJ_G0018116.1 mouse_genomes_project 11 81055735 81067500 + MGP_CASTEiJ_P0030614 Adap2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0100419.1 MGP_CASTEiJ_G0037332.1 mouse_genomes_project 11 9961561 9961690 + Gm22789 snoRNA snoRNA MGP_CASTEiJ_T0027256.1 MGP_CASTEiJ_G0017318.1 mouse_genomes_project 11 2464844 2479105 - MGP_CASTEiJ_P0027256 Ccdc117 protein_coding protein_coding MGP_CASTEiJ_T0027257.1 MGP_CASTEiJ_G0017318.1 mouse_genomes_project 11 2465878 2479009 - MGP_CASTEiJ_P0027257 Ccdc117 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012131.1 MGP_CASTEiJ_G0010294.1 mouse_genomes_project 11 5200674 5202376 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099281.1 MGP_CASTEiJ_G0036194.1 mouse_genomes_project 11 109284042 109284186 - Gm25556 snRNA snRNA MGP_CASTEiJ_T0029708.1 MGP_CASTEiJ_G0017904.1 mouse_genomes_project 11 70621735 70626973 - MGP_CASTEiJ_P0029708 Cxcl16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029709.1 MGP_CASTEiJ_G0017904.1 mouse_genomes_project 11 70623120 70627180 - MGP_CASTEiJ_P0029709 Cxcl16 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029710.1 MGP_CASTEiJ_G0017904.1 mouse_genomes_project 11 70623129 70627397 - Cxcl16 protein_coding retained_intron MGP_CASTEiJ_T0029902.1 MGP_CASTEiJ_G0017939.1 mouse_genomes_project 11 72563732 72566621 - MGP_CASTEiJ_P0029902 Gm43951 protein_coding protein_coding MGP_CASTEiJ_T0016434.1 MGP_CASTEiJ_G0014469.1 mouse_genomes_project 11 16154838 16161969 - 8430419K02Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016435.1 MGP_CASTEiJ_G0014469.1 mouse_genomes_project 11 16154942 16177206 - 8430419K02Rik processed_transcript processed_transcript MGP_CASTEiJ_T0006055.1 MGP_CASTEiJ_G0005069.1 mouse_genomes_project 11 35808684 35825120 + Gm12128 lincRNA lincRNA MGP_CASTEiJ_T0029021.1 MGP_CASTEiJ_G0017754.1 mouse_genomes_project 11 61303463 61354069 - Slc5a10 protein_coding processed_transcript MGP_CASTEiJ_T0029022.1 MGP_CASTEiJ_G0017754.1 mouse_genomes_project 11 61303464 61353189 - MGP_CASTEiJ_P0029022 Slc5a10 protein_coding protein_coding MGP_CASTEiJ_T0029023.1 MGP_CASTEiJ_G0017754.1 mouse_genomes_project 11 61303464 61354042 - MGP_CASTEiJ_P0029023 Slc5a10 protein_coding protein_coding MGP_CASTEiJ_T0029024.1 MGP_CASTEiJ_G0017754.1 mouse_genomes_project 11 61303474 61353240 - MGP_CASTEiJ_P0029024 Slc5a10 protein_coding protein_coding MGP_CASTEiJ_T0032439.1 MGP_CASTEiJ_G0018564.1 mouse_genomes_project 11 106128889 106139563 - MGP_CASTEiJ_P0032439 1700023F06Rik protein_coding protein_coding MGP_CASTEiJ_T0032440.1 MGP_CASTEiJ_G0018564.1 mouse_genomes_project 11 106128906 106132778 - MGP_CASTEiJ_P0032440 1700023F06Rik protein_coding protein_coding MGP_CASTEiJ_T0032441.1 MGP_CASTEiJ_G0018564.1 mouse_genomes_project 11 106129361 106139537 - MGP_CASTEiJ_P0032441 1700023F06Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032442.1 MGP_CASTEiJ_G0018564.1 mouse_genomes_project 11 106130270 106139538 - MGP_CASTEiJ_P0032442 1700023F06Rik protein_coding protein_coding MGP_CASTEiJ_T0032443.1 MGP_CASTEiJ_G0018564.1 mouse_genomes_project 11 106130642 106139563 - 1700023F06Rik protein_coding retained_intron MGP_CASTEiJ_T0030888.1 MGP_CASTEiJ_G0018190.1 mouse_genomes_project 11 86654466 86692676 + MGP_CASTEiJ_P0030888 Ppm1d protein_coding protein_coding MGP_CASTEiJ_T0030889.1 MGP_CASTEiJ_G0018190.1 mouse_genomes_project 11 86655386 86682714 + MGP_CASTEiJ_P0030889 Ppm1d protein_coding protein_coding MGP_CASTEiJ_T0012374.1 MGP_CASTEiJ_G0010537.1 mouse_genomes_project 11 101842487 101843480 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031740.1 MGP_CASTEiJ_G0018386.1 mouse_genomes_project 11 101411182 101427266 + MGP_CASTEiJ_P0031740 Cdc6 protein_coding protein_coding MGP_CASTEiJ_T0031741.1 MGP_CASTEiJ_G0018386.1 mouse_genomes_project 11 101411230 101427266 + MGP_CASTEiJ_P0031741 Cdc6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031742.1 MGP_CASTEiJ_G0018386.1 mouse_genomes_project 11 101411532 101426117 + MGP_CASTEiJ_P0031742 Cdc6 protein_coding protein_coding MGP_CASTEiJ_T0098813.1 MGP_CASTEiJ_G0035743.1 mouse_genomes_project 11 165521 166854 - Gm11948 sense_intronic sense_intronic MGP_CASTEiJ_T0006219.1 MGP_CASTEiJ_G0005195.1 mouse_genomes_project 11 124976721 124978078 + Gm17586 lincRNA lincRNA MGP_CASTEiJ_T0028048.1 MGP_CASTEiJ_G0017501.1 mouse_genomes_project 11 43144711 43567337 + MGP_CASTEiJ_P0028048 Ebf1 protein_coding protein_coding MGP_CASTEiJ_T0028049.1 MGP_CASTEiJ_G0017501.1 mouse_genomes_project 11 43144711 43567873 + MGP_CASTEiJ_P0028049 Ebf1 protein_coding protein_coding MGP_CASTEiJ_T0028050.1 MGP_CASTEiJ_G0017501.1 mouse_genomes_project 11 43144711 43570407 + MGP_CASTEiJ_P0028050 Ebf1 protein_coding protein_coding MGP_CASTEiJ_T0028051.1 MGP_CASTEiJ_G0017501.1 mouse_genomes_project 11 43146814 43175588 + Ebf1 protein_coding processed_transcript MGP_CASTEiJ_T0028052.1 MGP_CASTEiJ_G0017501.1 mouse_genomes_project 11 43146877 43172210 + Ebf1 protein_coding processed_transcript MGP_CASTEiJ_T0028053.1 MGP_CASTEiJ_G0017501.1 mouse_genomes_project 11 43150462 43172200 + Ebf1 protein_coding processed_transcript MGP_CASTEiJ_T0028054.1 MGP_CASTEiJ_G0017501.1 mouse_genomes_project 11 43470629 43534192 + Ebf1 protein_coding processed_transcript MGP_CASTEiJ_T0012349.1 MGP_CASTEiJ_G0010512.1 mouse_genomes_project 11 88939965 88944530 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032575.1 MGP_CASTEiJ_G0018592.1 mouse_genomes_project 11 109055385 109079503 + MGP_CASTEiJ_P0032575 Ace protein_coding protein_coding MGP_CASTEiJ_T0032576.1 MGP_CASTEiJ_G0018592.1 mouse_genomes_project 11 109058755 109078799 + MGP_CASTEiJ_P0032576 Ace protein_coding protein_coding MGP_CASTEiJ_T0032577.1 MGP_CASTEiJ_G0018592.1 mouse_genomes_project 11 109062632 109078792 + MGP_CASTEiJ_P0032577 Ace protein_coding protein_coding MGP_CASTEiJ_T0032578.1 MGP_CASTEiJ_G0018592.1 mouse_genomes_project 11 109064034 109074628 + Ace protein_coding processed_transcript MGP_CASTEiJ_T0029034.1 MGP_CASTEiJ_G0017758.1 mouse_genomes_project 11 61521574 61594721 - MGP_CASTEiJ_P0029034 Akap10 protein_coding protein_coding MGP_CASTEiJ_T0029035.1 MGP_CASTEiJ_G0017758.1 mouse_genomes_project 11 61525101 61594963 - MGP_CASTEiJ_P0029035 Akap10 protein_coding protein_coding MGP_CASTEiJ_T0029036.1 MGP_CASTEiJ_G0017758.1 mouse_genomes_project 11 61525466 61533415 - Akap10 protein_coding processed_transcript MGP_CASTEiJ_T0029037.1 MGP_CASTEiJ_G0017758.1 mouse_genomes_project 11 61526790 61594807 - MGP_CASTEiJ_P0029037 Akap10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029038.1 MGP_CASTEiJ_G0017758.1 mouse_genomes_project 11 61546873 61594937 - MGP_CASTEiJ_P0029038 Akap10 protein_coding protein_coding MGP_CASTEiJ_T0029039.1 MGP_CASTEiJ_G0017758.1 mouse_genomes_project 11 61586655 61594918 - Akap10 protein_coding processed_transcript MGP_CASTEiJ_T0012389.1 MGP_CASTEiJ_G0010552.1 mouse_genomes_project 11 106540994 106541852 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032444.1 MGP_CASTEiJ_G0018565.1 mouse_genomes_project 11 106139141 106149495 - MGP_CASTEiJ_P0032444 Spata32 protein_coding protein_coding MGP_CASTEiJ_T0009412.1 MGP_CASTEiJ_G0007600.1 mouse_genomes_project 11 21611179 21611293 + Gm44381 miRNA miRNA MGP_CASTEiJ_T0027801.1 MGP_CASTEiJ_G0017436.1 mouse_genomes_project 11 28875951 28899789 - MGP_CASTEiJ_P0027801 Erlec1 protein_coding protein_coding MGP_CASTEiJ_T0027802.1 MGP_CASTEiJ_G0017436.1 mouse_genomes_project 11 28876923 28894102 - MGP_CASTEiJ_P0027802 Erlec1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027803.1 MGP_CASTEiJ_G0017436.1 mouse_genomes_project 11 28880609 28893718 - MGP_CASTEiJ_P0027803 Erlec1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027804.1 MGP_CASTEiJ_G0017436.1 mouse_genomes_project 11 28888332 28893835 - Erlec1 protein_coding retained_intron MGP_CASTEiJ_T0028733.1 MGP_CASTEiJ_G0017696.1 mouse_genomes_project 11 58401394 58403549 + MGP_CASTEiJ_P0028733 Hist3h2a protein_coding protein_coding MGP_CASTEiJ_T0029197.1 MGP_CASTEiJ_G0017790.1 mouse_genomes_project 11 66836560 66854829 + MGP_CASTEiJ_P0029197 Pirt protein_coding protein_coding MGP_CASTEiJ_T0003095.1 MGP_CASTEiJ_G0002881.1 mouse_genomes_project 11 63769929 63773742 + 9630013K17Rik antisense antisense MGP_CASTEiJ_T0003046.1 MGP_CASTEiJ_G0002839.1 mouse_genomes_project 11 49519015 49520255 - Gm12199 antisense antisense MGP_CASTEiJ_T0029198.1 MGP_CASTEiJ_G0017791.1 mouse_genomes_project 11 66954785 66964961 + MGP_CASTEiJ_P0029198 Tmem220 protein_coding protein_coding MGP_CASTEiJ_T0029199.1 MGP_CASTEiJ_G0017791.1 mouse_genomes_project 11 66954785 66964488 + MGP_CASTEiJ_P0029199 Tmem220 protein_coding protein_coding MGP_CASTEiJ_T0012222.1 MGP_CASTEiJ_G0010385.1 mouse_genomes_project 11 39671601 39672135 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030083.1 MGP_CASTEiJ_G0018005.1 mouse_genomes_project 11 75263574 75319250 + MGP_CASTEiJ_P0030083 Mettl16 protein_coding protein_coding MGP_CASTEiJ_T0030084.1 MGP_CASTEiJ_G0018005.1 mouse_genomes_project 11 75263574 75329875 + MGP_CASTEiJ_P0030084 Mettl16 protein_coding protein_coding MGP_CASTEiJ_T0030085.1 MGP_CASTEiJ_G0018005.1 mouse_genomes_project 11 75263660 75266382 + MGP_CASTEiJ_P0030085 Mettl16 protein_coding protein_coding MGP_CASTEiJ_T0030086.1 MGP_CASTEiJ_G0018005.1 mouse_genomes_project 11 75263669 75319250 + MGP_CASTEiJ_P0030086 Mettl16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030087.1 MGP_CASTEiJ_G0018005.1 mouse_genomes_project 11 75299015 75318304 + Mettl16 protein_coding retained_intron MGP_CASTEiJ_T0030088.1 MGP_CASTEiJ_G0018005.1 mouse_genomes_project 11 75306537 75318867 + Mettl16 protein_coding processed_transcript MGP_CASTEiJ_T0003206.1 MGP_CASTEiJ_G0002969.1 mouse_genomes_project 11 109141774 109142474 - Gm11646 antisense antisense MGP_CASTEiJ_T0029644.1 MGP_CASTEiJ_G0017891.1 mouse_genomes_project 11 70283435 70315503 + MGP_CASTEiJ_P0029644 protein_coding protein_coding MGP_CASTEiJ_T0029645.1 MGP_CASTEiJ_G0017891.1 mouse_genomes_project 11 70308253 70315525 + MGP_CASTEiJ_P0029645 protein_coding protein_coding MGP_CASTEiJ_T0029646.1 MGP_CASTEiJ_G0017891.1 mouse_genomes_project 11 70308329 70314340 + MGP_CASTEiJ_P0029646 protein_coding protein_coding MGP_CASTEiJ_T0029647.1 MGP_CASTEiJ_G0017891.1 mouse_genomes_project 11 70309293 70309603 + MGP_CASTEiJ_P0029647 protein_coding protein_coding MGP_CASTEiJ_T0031829.1 MGP_CASTEiJ_G0018442.1 mouse_genomes_project 11 102672329 102676455 - MGP_CASTEiJ_P0031829 Krt31 protein_coding protein_coding MGP_CASTEiJ_T0016456.1 MGP_CASTEiJ_G0014484.1 mouse_genomes_project 11 57078031 57086193 - 2010001A14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016457.1 MGP_CASTEiJ_G0014484.1 mouse_genomes_project 11 57078051 57086190 - 2010001A14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016458.1 MGP_CASTEiJ_G0014484.1 mouse_genomes_project 11 57078137 57086174 - 2010001A14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0006086.1 MGP_CASTEiJ_G0005097.1 mouse_genomes_project 11 61516774 61521077 - A530017D24Rik lincRNA lincRNA MGP_CASTEiJ_T0006087.1 MGP_CASTEiJ_G0005097.1 mouse_genomes_project 11 61517404 61521878 - A530017D24Rik lincRNA lincRNA MGP_CASTEiJ_T0032361.1 MGP_CASTEiJ_G0018549.1 mouse_genomes_project 11 105699683 105720652 - MGP_CASTEiJ_P0032361 Gjc1 protein_coding protein_coding MGP_CASTEiJ_T0032362.1 MGP_CASTEiJ_G0018549.1 mouse_genomes_project 11 105699683 105721173 - MGP_CASTEiJ_P0032362 Gjc1 protein_coding protein_coding MGP_CASTEiJ_T0032363.1 MGP_CASTEiJ_G0018549.1 mouse_genomes_project 11 105699683 105704873 - MGP_CASTEiJ_P0032363 Gjc1 protein_coding protein_coding MGP_CASTEiJ_T0032364.1 MGP_CASTEiJ_G0018549.1 mouse_genomes_project 11 105700838 105705769 - Gjc1 protein_coding retained_intron MGP_CASTEiJ_T0032365.1 MGP_CASTEiJ_G0018549.1 mouse_genomes_project 11 105701283 105720683 - Gjc1 protein_coding processed_transcript MGP_CASTEiJ_T0029354.1 MGP_CASTEiJ_G0017826.1 mouse_genomes_project 11 69137366 69141272 + MGP_CASTEiJ_P0029354 Vamp2 protein_coding protein_coding MGP_CASTEiJ_T0029355.1 MGP_CASTEiJ_G0017826.1 mouse_genomes_project 11 69137386 69139578 + MGP_CASTEiJ_P0029355 Vamp2 protein_coding protein_coding MGP_CASTEiJ_T0029356.1 MGP_CASTEiJ_G0017826.1 mouse_genomes_project 11 69137398 69138561 + Vamp2 protein_coding retained_intron MGP_CASTEiJ_T0029357.1 MGP_CASTEiJ_G0017826.1 mouse_genomes_project 11 69137419 69138936 + Vamp2 protein_coding processed_transcript MGP_CASTEiJ_T0029358.1 MGP_CASTEiJ_G0017826.1 mouse_genomes_project 11 69138491 69139062 + Vamp2 protein_coding retained_intron MGP_CASTEiJ_T0016484.1 MGP_CASTEiJ_G0014499.1 mouse_genomes_project 11 76147280 76153491 - 4931413K12Rik processed_transcript processed_transcript MGP_CASTEiJ_T0032644.1 MGP_CASTEiJ_G0018612.1 mouse_genomes_project 11 109503824 109614084 - MGP_CASTEiJ_P0032644 Ern1 protein_coding protein_coding MGP_CASTEiJ_T0032645.1 MGP_CASTEiJ_G0018612.1 mouse_genomes_project 11 109511046 109614140 - Ern1 protein_coding processed_transcript MGP_CASTEiJ_T0032646.1 MGP_CASTEiJ_G0018612.1 mouse_genomes_project 11 109529009 109614124 - MGP_CASTEiJ_P0032646 Ern1 protein_coding protein_coding MGP_CASTEiJ_T0032647.1 MGP_CASTEiJ_G0018612.1 mouse_genomes_project 11 109551013 109614096 - MGP_CASTEiJ_P0032647 Ern1 protein_coding protein_coding MGP_CASTEiJ_T0032648.1 MGP_CASTEiJ_G0018612.1 mouse_genomes_project 11 109579079 109614091 - MGP_CASTEiJ_P0032648 Ern1 protein_coding protein_coding MGP_CASTEiJ_T0032046.1 MGP_CASTEiJ_G0018495.1 mouse_genomes_project 11 103987628 104007864 + MGP_CASTEiJ_P0032046 Wnk4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032047.1 MGP_CASTEiJ_G0018495.1 mouse_genomes_project 11 103987659 104007864 + MGP_CASTEiJ_P0032047 Wnk4 protein_coding protein_coding MGP_CASTEiJ_T0032048.1 MGP_CASTEiJ_G0018495.1 mouse_genomes_project 11 103987716 104007729 + MGP_CASTEiJ_P0032048 Wnk4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032049.1 MGP_CASTEiJ_G0018495.1 mouse_genomes_project 11 103994312 104004565 + MGP_CASTEiJ_P0032049 Wnk4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032050.1 MGP_CASTEiJ_G0018495.1 mouse_genomes_project 11 104007100 104007861 + MGP_CASTEiJ_P0032050 Wnk4 protein_coding protein_coding MGP_CASTEiJ_T0030021.1 MGP_CASTEiJ_G0017974.1 mouse_genomes_project 11 73926999 73933146 - MGP_CASTEiJ_P0030021 protein_coding protein_coding MGP_CASTEiJ_T0012218.1 MGP_CASTEiJ_G0010381.1 mouse_genomes_project 11 38754129 38754793 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003240.1 MGP_CASTEiJ_G0002995.1 mouse_genomes_project 11 121350306 121356085 - Gm16045 antisense antisense MGP_CASTEiJ_T0009521.1 MGP_CASTEiJ_G0007709.1 mouse_genomes_project 11 123046258 123046342 - Gm25040 miRNA miRNA MGP_CASTEiJ_T0100455.1 MGP_CASTEiJ_G0037368.1 mouse_genomes_project 11 75410396 75410489 + Snord91a snoRNA snoRNA MGP_CASTEiJ_T0028187.1 MGP_CASTEiJ_G0017543.1 mouse_genomes_project 11 48151082 48152018 + MGP_CASTEiJ_P0028187 Olfr1388 protein_coding protein_coding MGP_CASTEiJ_T0100467.1 MGP_CASTEiJ_G0037380.1 mouse_genomes_project 11 92499734 92499871 - Gm22762 snoRNA snoRNA MGP_CASTEiJ_T0027084.1 MGP_CASTEiJ_G0017283.1 mouse_genomes_project 11 778132 794023 - MGP_CASTEiJ_P0027084 Tcn2 protein_coding protein_coding MGP_CASTEiJ_T0027085.1 MGP_CASTEiJ_G0017283.1 mouse_genomes_project 11 778132 795806 - MGP_CASTEiJ_P0027085 Tcn2 protein_coding protein_coding MGP_CASTEiJ_T0027086.1 MGP_CASTEiJ_G0017283.1 mouse_genomes_project 11 778132 795691 - MGP_CASTEiJ_P0027086 Tcn2 protein_coding protein_coding MGP_CASTEiJ_T0027087.1 MGP_CASTEiJ_G0017283.1 mouse_genomes_project 11 778132 794038 - MGP_CASTEiJ_P0027087 Tcn2 protein_coding protein_coding MGP_CASTEiJ_T0027088.1 MGP_CASTEiJ_G0017283.1 mouse_genomes_project 11 778132 795607 - MGP_CASTEiJ_P0027088 Tcn2 protein_coding protein_coding MGP_CASTEiJ_T0027089.1 MGP_CASTEiJ_G0017283.1 mouse_genomes_project 11 778132 795725 - MGP_CASTEiJ_P0027089 Tcn2 protein_coding protein_coding MGP_CASTEiJ_T0027090.1 MGP_CASTEiJ_G0017283.1 mouse_genomes_project 11 778132 795642 - MGP_CASTEiJ_P0027090 Tcn2 protein_coding protein_coding MGP_CASTEiJ_T0100483.1 MGP_CASTEiJ_G0037396.1 mouse_genomes_project 11 120702416 120702490 + Snord1a snoRNA snoRNA MGP_CASTEiJ_T0027268.1 MGP_CASTEiJ_G0017321.1 mouse_genomes_project 11 2650517 2680299 - MGP_CASTEiJ_P0027268 Urgcp protein_coding unknown_likely_coding MGP_CASTEiJ_T0027269.1 MGP_CASTEiJ_G0017321.1 mouse_genomes_project 11 2650517 2680299 - MGP_CASTEiJ_P0027269 Urgcp protein_coding protein_coding MGP_CASTEiJ_T0027270.1 MGP_CASTEiJ_G0017321.1 mouse_genomes_project 11 2653547 2680261 - MGP_CASTEiJ_P0027270 Urgcp protein_coding protein_coding MGP_CASTEiJ_T0012123.1 MGP_CASTEiJ_G0010286.1 mouse_genomes_project 11 3447162 3447482 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098465.1 MGP_CASTEiJ_G0035396.1 mouse_genomes_project 11 87142811 87142928 + Gm23473 rRNA rRNA MGP_CASTEiJ_T0028185.1 MGP_CASTEiJ_G0017541.1 mouse_genomes_project 11 48076438 48077374 + MGP_CASTEiJ_P0028185 Olfr1391 protein_coding protein_coding MGP_CASTEiJ_T0027827.1 MGP_CASTEiJ_G0017443.1 mouse_genomes_project 11 30135952 30149940 - MGP_CASTEiJ_P0027827 Il9r protein_coding protein_coding MGP_CASTEiJ_T0027828.1 MGP_CASTEiJ_G0017443.1 mouse_genomes_project 11 30137402 30149997 - MGP_CASTEiJ_P0027828 Il9r protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027829.1 MGP_CASTEiJ_G0017443.1 mouse_genomes_project 11 30138679 30149954 - MGP_CASTEiJ_P0027829 Il9r protein_coding protein_coding MGP_CASTEiJ_T0027830.1 MGP_CASTEiJ_G0017443.1 mouse_genomes_project 11 30138895 30149940 - MGP_CASTEiJ_P0027830 Il9r protein_coding protein_coding MGP_CASTEiJ_T0027831.1 MGP_CASTEiJ_G0017443.1 mouse_genomes_project 11 30143009 30149997 - Il9r protein_coding retained_intron MGP_CASTEiJ_T0098826.1 MGP_CASTEiJ_G0035754.1 mouse_genomes_project 11 123403967 123404546 - Gm11753 sense_intronic sense_intronic MGP_CASTEiJ_T0031289.1 MGP_CASTEiJ_G0018278.1 mouse_genomes_project 11 96684816 96686049 + MGP_CASTEiJ_P0031289 Cdc34b protein_coding protein_coding MGP_CASTEiJ_T0031290.1 MGP_CASTEiJ_G0018278.1 mouse_genomes_project 11 96684816 96686071 + MGP_CASTEiJ_P0031290 Cdc34b protein_coding protein_coding MGP_CASTEiJ_T0101984.1 MGP_CASTEiJ_G0038709.1 mouse_genomes_project 11 57843399 57844339 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0028999.1 MGP_CASTEiJ_G0017751.1 mouse_genomes_project 11 61130732 61138516 + MGP_CASTEiJ_P0028999 B9d1 protein_coding protein_coding MGP_CASTEiJ_T0029000.1 MGP_CASTEiJ_G0017751.1 mouse_genomes_project 11 61130791 61138516 + B9d1 protein_coding processed_transcript MGP_CASTEiJ_T0029001.1 MGP_CASTEiJ_G0017751.1 mouse_genomes_project 11 61130840 61134022 + B9d1 protein_coding processed_transcript MGP_CASTEiJ_T0029002.1 MGP_CASTEiJ_G0017751.1 mouse_genomes_project 11 61130843 61138516 + B9d1 protein_coding processed_transcript MGP_CASTEiJ_T0029003.1 MGP_CASTEiJ_G0017751.1 mouse_genomes_project 11 61134709 61138516 + MGP_CASTEiJ_P0029003 B9d1 protein_coding protein_coding MGP_CASTEiJ_T0029004.1 MGP_CASTEiJ_G0017751.1 mouse_genomes_project 11 61137899 61138516 + B9d1 protein_coding processed_transcript MGP_CASTEiJ_T0016526.1 MGP_CASTEiJ_G0014524.1 mouse_genomes_project 11 106651469 106677091 + C130046K22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016527.1 MGP_CASTEiJ_G0014524.1 mouse_genomes_project 11 106651469 106656764 + C130046K22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0030979.1 MGP_CASTEiJ_G0018211.1 mouse_genomes_project 11 88680477 88817643 - MGP_CASTEiJ_P0030979 Ppm1e protein_coding protein_coding MGP_CASTEiJ_T0030980.1 MGP_CASTEiJ_G0018211.1 mouse_genomes_project 11 88697640 88817257 - Ppm1e protein_coding processed_transcript MGP_CASTEiJ_T0031938.1 MGP_CASTEiJ_G0018472.1 mouse_genomes_project 11 103388574 103414696 - MGP_CASTEiJ_P0031938 Rab5c protein_coding protein_coding MGP_CASTEiJ_T0031939.1 MGP_CASTEiJ_G0018472.1 mouse_genomes_project 11 103388576 103414696 - MGP_CASTEiJ_P0031939 Rab5c protein_coding protein_coding MGP_CASTEiJ_T0031940.1 MGP_CASTEiJ_G0018472.1 mouse_genomes_project 11 103392065 103406719 - MGP_CASTEiJ_P0031940 Rab5c protein_coding protein_coding MGP_CASTEiJ_T0031941.1 MGP_CASTEiJ_G0018472.1 mouse_genomes_project 11 103393847 103414657 - MGP_CASTEiJ_P0031941 Rab5c protein_coding protein_coding MGP_CASTEiJ_T0028668.1 MGP_CASTEiJ_G0017665.1 mouse_genomes_project 11 57662850 57670792 + MGP_CASTEiJ_P0028668 Zfp692 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028669.1 MGP_CASTEiJ_G0017665.1 mouse_genomes_project 11 57662850 57670792 + MGP_CASTEiJ_P0028669 Zfp692 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003204.1 MGP_CASTEiJ_G0002968.1 mouse_genomes_project 11 109053029 109075208 - Gm11651 antisense antisense MGP_CASTEiJ_T0003205.1 MGP_CASTEiJ_G0002968.1 mouse_genomes_project 11 109059082 109075180 - Gm11651 antisense antisense MGP_CASTEiJ_T0029494.1 MGP_CASTEiJ_G0017859.1 mouse_genomes_project 11 69843073 69867554 - MGP_CASTEiJ_P0029494 Polr2a protein_coding protein_coding MGP_CASTEiJ_T0029495.1 MGP_CASTEiJ_G0017859.1 mouse_genomes_project 11 69843487 69867141 - MGP_CASTEiJ_P0029495 Polr2a protein_coding protein_coding MGP_CASTEiJ_T0029496.1 MGP_CASTEiJ_G0017859.1 mouse_genomes_project 11 69845288 69846426 - Polr2a protein_coding processed_transcript MGP_CASTEiJ_T0029497.1 MGP_CASTEiJ_G0017859.1 mouse_genomes_project 11 69850704 69851651 - Polr2a protein_coding processed_transcript MGP_CASTEiJ_T0099215.1 MGP_CASTEiJ_G0036128.1 mouse_genomes_project 11 9325236 9325392 - Gm24036 snRNA snRNA MGP_CASTEiJ_T0016505.1 MGP_CASTEiJ_G0014509.1 mouse_genomes_project 11 97980333 97982508 + 4833417C18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0028213.1 MGP_CASTEiJ_G0017552.1 mouse_genomes_project 11 48644767 48726870 + MGP_CASTEiJ_P0028213 Rasgef1c protein_coding protein_coding MGP_CASTEiJ_T0028214.1 MGP_CASTEiJ_G0017552.1 mouse_genomes_project 11 48645028 48728227 + MGP_CASTEiJ_P0028214 Rasgef1c protein_coding protein_coding MGP_CASTEiJ_T0028215.1 MGP_CASTEiJ_G0017552.1 mouse_genomes_project 11 48706526 48723157 + Rasgef1c protein_coding processed_transcript MGP_CASTEiJ_T0029206.1 MGP_CASTEiJ_G0017793.1 mouse_genomes_project 11 66984356 66997014 + MGP_CASTEiJ_P0029206 Sco1 protein_coding protein_coding MGP_CASTEiJ_T0029207.1 MGP_CASTEiJ_G0017793.1 mouse_genomes_project 11 66984356 66997249 + MGP_CASTEiJ_P0029207 Sco1 protein_coding protein_coding MGP_CASTEiJ_T0029208.1 MGP_CASTEiJ_G0017793.1 mouse_genomes_project 11 66985458 66995751 + Sco1 protein_coding processed_transcript MGP_CASTEiJ_T0029209.1 MGP_CASTEiJ_G0017793.1 mouse_genomes_project 11 66990024 66998737 + Sco1 protein_coding processed_transcript MGP_CASTEiJ_T0030790.1 MGP_CASTEiJ_G0018170.1 mouse_genomes_project 11 84990291 85020023 + MGP_CASTEiJ_P0030790 Heatr6 protein_coding protein_coding MGP_CASTEiJ_T0030791.1 MGP_CASTEiJ_G0018170.1 mouse_genomes_project 11 84990309 85018278 + Heatr6 protein_coding processed_transcript MGP_CASTEiJ_T0030792.1 MGP_CASTEiJ_G0018170.1 mouse_genomes_project 11 84990624 84992398 + Heatr6 protein_coding processed_transcript MGP_CASTEiJ_T0030793.1 MGP_CASTEiJ_G0018170.1 mouse_genomes_project 11 84997302 85001577 + Heatr6 protein_coding retained_intron MGP_CASTEiJ_T0030794.1 MGP_CASTEiJ_G0018170.1 mouse_genomes_project 11 85010658 85015171 + Heatr6 protein_coding processed_transcript MGP_CASTEiJ_T0009435.1 MGP_CASTEiJ_G0007623.1 mouse_genomes_project 11 54696665 54696721 + Mir7652 miRNA miRNA MGP_CASTEiJ_T0027168.1 MGP_CASTEiJ_G0017305.1 mouse_genomes_project 11 1635366 1832104 + MGP_CASTEiJ_P0027168 Thoc5 protein_coding protein_coding MGP_CASTEiJ_T0027169.1 MGP_CASTEiJ_G0017305.1 mouse_genomes_project 11 1635389 1832102 + MGP_CASTEiJ_P0027169 Thoc5 protein_coding protein_coding MGP_CASTEiJ_T0027191.1 MGP_CASTEiJ_G0017305.1 mouse_genomes_project 11 1803755 1806002 + Thoc5 protein_coding processed_transcript MGP_CASTEiJ_T0027192.1 MGP_CASTEiJ_G0017305.1 mouse_genomes_project 11 1803755 1817544 + Thoc5 protein_coding processed_transcript MGP_CASTEiJ_T0027193.1 MGP_CASTEiJ_G0017305.1 mouse_genomes_project 11 1803755 1821477 + MGP_CASTEiJ_P0027193 Thoc5 protein_coding protein_coding MGP_CASTEiJ_T0027194.1 MGP_CASTEiJ_G0017305.1 mouse_genomes_project 11 1818540 1823682 + Thoc5 protein_coding processed_transcript MGP_CASTEiJ_T0098464.1 MGP_CASTEiJ_G0035395.1 mouse_genomes_project 11 85000932 85001042 - Gm22311 rRNA rRNA MGP_CASTEiJ_T0026986.1 MGP_CASTEiJ_G0017268.1 mouse_genomes_project 11 1761 49138 + MGP_CASTEiJ_P0026986 Eif4enif1 protein_coding protein_coding MGP_CASTEiJ_T0026987.1 MGP_CASTEiJ_G0017268.1 mouse_genomes_project 11 2085 25516 + Eif4enif1 protein_coding retained_intron MGP_CASTEiJ_T0026988.1 MGP_CASTEiJ_G0017268.1 mouse_genomes_project 11 2085 49145 + MGP_CASTEiJ_P0026988 Eif4enif1 protein_coding protein_coding MGP_CASTEiJ_T0026989.1 MGP_CASTEiJ_G0017268.1 mouse_genomes_project 11 2111 12885 + Eif4enif1 protein_coding retained_intron MGP_CASTEiJ_T0026990.1 MGP_CASTEiJ_G0017268.1 mouse_genomes_project 11 2156 23753 + MGP_CASTEiJ_P0026990 Eif4enif1 protein_coding protein_coding MGP_CASTEiJ_T0026991.1 MGP_CASTEiJ_G0017268.1 mouse_genomes_project 11 2417 49142 + MGP_CASTEiJ_P0026991 Eif4enif1 protein_coding protein_coding MGP_CASTEiJ_T0026992.1 MGP_CASTEiJ_G0017268.1 mouse_genomes_project 11 2443 49144 + MGP_CASTEiJ_P0026992 Eif4enif1 protein_coding protein_coding MGP_CASTEiJ_T0026993.1 MGP_CASTEiJ_G0017268.1 mouse_genomes_project 11 3051 49143 + MGP_CASTEiJ_P0026993 Eif4enif1 protein_coding protein_coding MGP_CASTEiJ_T0026994.1 MGP_CASTEiJ_G0017268.1 mouse_genomes_project 11 31412 34089 + Eif4enif1 protein_coding retained_intron MGP_CASTEiJ_T0026995.1 MGP_CASTEiJ_G0017268.1 mouse_genomes_project 11 31412 34052 + Eif4enif1 protein_coding retained_intron MGP_CASTEiJ_T0026996.1 MGP_CASTEiJ_G0017268.1 mouse_genomes_project 11 31458 43971 + MGP_CASTEiJ_P0026996 Eif4enif1 protein_coding protein_coding MGP_CASTEiJ_T0026997.1 MGP_CASTEiJ_G0017268.1 mouse_genomes_project 11 38116 45490 + Eif4enif1 protein_coding retained_intron MGP_CASTEiJ_T0026998.1 MGP_CASTEiJ_G0017268.1 mouse_genomes_project 11 39444 43953 + Eif4enif1 protein_coding retained_intron MGP_CASTEiJ_T0031795.1 MGP_CASTEiJ_G0018408.1 mouse_genomes_project 11 102116698 102117624 - MGP_CASTEiJ_P0031795 protein_coding protein_coding MGP_CASTEiJ_T0033428.1 MGP_CASTEiJ_G0018763.1 mouse_genomes_project 11 122130969 122168874 + MGP_CASTEiJ_P0033428 Pgs1 protein_coding protein_coding MGP_CASTEiJ_T0033429.1 MGP_CASTEiJ_G0018763.1 mouse_genomes_project 11 122131584 122168874 + MGP_CASTEiJ_P0033429 Pgs1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033430.1 MGP_CASTEiJ_G0018763.1 mouse_genomes_project 11 122145798 122168788 + MGP_CASTEiJ_P0033430 Pgs1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033431.1 MGP_CASTEiJ_G0018763.1 mouse_genomes_project 11 122157272 122168874 + Pgs1 protein_coding retained_intron MGP_CASTEiJ_T0031890.1 MGP_CASTEiJ_G0018462.1 mouse_genomes_project 11 103126696 103137718 - MGP_CASTEiJ_P0031890 Klhl11 protein_coding protein_coding MGP_CASTEiJ_T0012234.1 MGP_CASTEiJ_G0010397.1 mouse_genomes_project 11 47245451 47246724 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012397.1 MGP_CASTEiJ_G0010560.1 mouse_genomes_project 11 108859892 108863219 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031838.1 MGP_CASTEiJ_G0018447.1 mouse_genomes_project 11 102760930 102765106 - MGP_CASTEiJ_P0031838 Krt15 protein_coding protein_coding MGP_CASTEiJ_T0031839.1 MGP_CASTEiJ_G0018447.1 mouse_genomes_project 11 102762207 102763571 - Krt15 protein_coding retained_intron MGP_CASTEiJ_T0027758.1 MGP_CASTEiJ_G0017426.1 mouse_genomes_project 11 27376959 27414366 + MGP_CASTEiJ_P0027758 Clhc1 protein_coding protein_coding MGP_CASTEiJ_T0027759.1 MGP_CASTEiJ_G0017426.1 mouse_genomes_project 11 27398380 27414345 + Clhc1 protein_coding processed_transcript MGP_CASTEiJ_T0027760.1 MGP_CASTEiJ_G0017426.1 mouse_genomes_project 11 27398397 27414203 + Clhc1 protein_coding processed_transcript MGP_CASTEiJ_T0003188.1 MGP_CASTEiJ_G0002952.1 mouse_genomes_project 11 104074759 104081773 - Gm28156 antisense antisense MGP_CASTEiJ_T0100430.1 MGP_CASTEiJ_G0037343.1 mouse_genomes_project 11 32872358 32872486 - Gm22022 snoRNA snoRNA MGP_CASTEiJ_T0003141.1 MGP_CASTEiJ_G0002918.1 mouse_genomes_project 11 87584681 87595381 + Brip1os antisense antisense MGP_CASTEiJ_T0003142.1 MGP_CASTEiJ_G0002918.1 mouse_genomes_project 11 87584694 87693476 + Brip1os antisense antisense MGP_CASTEiJ_T0033321.1 MGP_CASTEiJ_G0018743.1 mouse_genomes_project 11 120886378 120892266 - Jmjd6 protein_coding retained_intron MGP_CASTEiJ_T0033322.1 MGP_CASTEiJ_G0018743.1 mouse_genomes_project 11 120886378 120892434 - MGP_CASTEiJ_P0033322 Jmjd6 protein_coding protein_coding MGP_CASTEiJ_T0033323.1 MGP_CASTEiJ_G0018743.1 mouse_genomes_project 11 120886379 120892275 - Jmjd6 protein_coding retained_intron MGP_CASTEiJ_T0033324.1 MGP_CASTEiJ_G0018743.1 mouse_genomes_project 11 120886379 120892340 - MGP_CASTEiJ_P0033324 Jmjd6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033325.1 MGP_CASTEiJ_G0018743.1 mouse_genomes_project 11 120886381 120890193 - MGP_CASTEiJ_P0033325 Jmjd6 protein_coding protein_coding MGP_CASTEiJ_T0033326.1 MGP_CASTEiJ_G0018743.1 mouse_genomes_project 11 120886534 120891690 - MGP_CASTEiJ_P0033326 Jmjd6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033327.1 MGP_CASTEiJ_G0018743.1 mouse_genomes_project 11 120886559 120891705 - MGP_CASTEiJ_P0033327 Jmjd6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028547.1 MGP_CASTEiJ_G0017631.1 mouse_genomes_project 11 53516447 53572174 + Meikin protein_coding retained_intron MGP_CASTEiJ_T0028548.1 MGP_CASTEiJ_G0017631.1 mouse_genomes_project 11 53516447 53572209 + MGP_CASTEiJ_P0028548 Meikin protein_coding protein_coding MGP_CASTEiJ_T0030027.1 MGP_CASTEiJ_G0017980.1 mouse_genomes_project 11 74238171 74242375 - MGP_CASTEiJ_P0030027 Olfr389 protein_coding protein_coding MGP_CASTEiJ_T0030028.1 MGP_CASTEiJ_G0017980.1 mouse_genomes_project 11 74238437 74242321 - MGP_CASTEiJ_P0030028 Olfr389 protein_coding protein_coding MGP_CASTEiJ_T0028275.1 MGP_CASTEiJ_G0017564.1 mouse_genomes_project 11 49398367 49616865 + MGP_CASTEiJ_P0028275 Adamts2 protein_coding protein_coding MGP_CASTEiJ_T0028276.1 MGP_CASTEiJ_G0017564.1 mouse_genomes_project 11 49398940 49613403 + MGP_CASTEiJ_P0028276 Adamts2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028277.1 MGP_CASTEiJ_G0017564.1 mouse_genomes_project 11 49584952 49585789 + Adamts2 protein_coding processed_transcript MGP_CASTEiJ_T0028278.1 MGP_CASTEiJ_G0017564.1 mouse_genomes_project 11 49590405 49591432 + Adamts2 protein_coding processed_transcript MGP_CASTEiJ_T0028279.1 MGP_CASTEiJ_G0017564.1 mouse_genomes_project 11 49604058 49606987 + Adamts2 protein_coding processed_transcript MGP_CASTEiJ_T0030008.1 MGP_CASTEiJ_G0017968.1 mouse_genomes_project 11 73729807 73748498 - MGP_CASTEiJ_P0030008 Aspa protein_coding protein_coding MGP_CASTEiJ_T0030009.1 MGP_CASTEiJ_G0017968.1 mouse_genomes_project 11 73729807 73753425 - MGP_CASTEiJ_P0030009 Aspa protein_coding protein_coding MGP_CASTEiJ_T0030010.1 MGP_CASTEiJ_G0017968.1 mouse_genomes_project 11 73738337 73750325 - MGP_CASTEiJ_P0030010 Aspa protein_coding protein_coding MGP_CASTEiJ_T0030011.1 MGP_CASTEiJ_G0017968.1 mouse_genomes_project 11 73739852 73748201 - Aspa protein_coding retained_intron MGP_CASTEiJ_T0030012.1 MGP_CASTEiJ_G0017968.1 mouse_genomes_project 11 73743688 73750655 - MGP_CASTEiJ_P0030012 Aspa protein_coding protein_coding MGP_CASTEiJ_T0030013.1 MGP_CASTEiJ_G0017968.1 mouse_genomes_project 11 73746073 73748478 - MGP_CASTEiJ_P0030013 Aspa protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032994.1 MGP_CASTEiJ_G0018687.1 mouse_genomes_project 11 119257199 119270352 + MGP_CASTEiJ_P0032994 Cdr2l protein_coding unknown_likely_coding MGP_CASTEiJ_T0012366.1 MGP_CASTEiJ_G0010529.1 mouse_genomes_project 11 97878159 97878334 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009475.1 MGP_CASTEiJ_G0007663.1 mouse_genomes_project 11 80576738 80576804 + Mir193a miRNA miRNA MGP_CASTEiJ_T0033365.1 MGP_CASTEiJ_G0018749.1 mouse_genomes_project 11 121286252 121456555 + MGP_CASTEiJ_P0033365 Sept9 protein_coding protein_coding MGP_CASTEiJ_T0033366.1 MGP_CASTEiJ_G0018749.1 mouse_genomes_project 11 121286252 121456555 + MGP_CASTEiJ_P0033366 Sept9 protein_coding protein_coding MGP_CASTEiJ_T0033367.1 MGP_CASTEiJ_G0018749.1 mouse_genomes_project 11 121324761 121458258 + MGP_CASTEiJ_P0033367 Sept9 protein_coding protein_coding MGP_CASTEiJ_T0033368.1 MGP_CASTEiJ_G0018749.1 mouse_genomes_project 11 121402098 121448522 + MGP_CASTEiJ_P0033368 Sept9 protein_coding protein_coding MGP_CASTEiJ_T0033369.1 MGP_CASTEiJ_G0018749.1 mouse_genomes_project 11 121423006 121452610 + MGP_CASTEiJ_P0033369 Sept9 protein_coding protein_coding MGP_CASTEiJ_T0033370.1 MGP_CASTEiJ_G0018749.1 mouse_genomes_project 11 121428854 121457579 + Sept9 protein_coding retained_intron MGP_CASTEiJ_T0033371.1 MGP_CASTEiJ_G0018749.1 mouse_genomes_project 11 121449491 121453231 + Sept9 protein_coding retained_intron MGP_CASTEiJ_T0033372.1 MGP_CASTEiJ_G0018749.1 mouse_genomes_project 11 121455316 121456816 + Sept9 protein_coding retained_intron MGP_CASTEiJ_T0099248.1 MGP_CASTEiJ_G0036161.1 mouse_genomes_project 11 75211976 75212083 + Gm24211 snRNA snRNA MGP_CASTEiJ_T0003251.1 MGP_CASTEiJ_G0003006.1 mouse_genomes_project 11 124855880 124861420 - Gm11789 antisense antisense MGP_CASTEiJ_T0003252.1 MGP_CASTEiJ_G0003006.1 mouse_genomes_project 11 124855906 124862354 - Gm11789 antisense antisense MGP_CASTEiJ_T0003253.1 MGP_CASTEiJ_G0003006.1 mouse_genomes_project 11 124855932 124862651 - Gm11789 antisense antisense MGP_CASTEiJ_T0003254.1 MGP_CASTEiJ_G0003006.1 mouse_genomes_project 11 124857288 124862379 - Gm11789 antisense antisense MGP_CASTEiJ_T0003255.1 MGP_CASTEiJ_G0003006.1 mouse_genomes_project 11 124861074 124862363 - Gm11789 antisense antisense MGP_CASTEiJ_T0098815.1 MGP_CASTEiJ_G0035745.1 mouse_genomes_project 11 54671730 54671854 + Gm12238 sense_intronic sense_intronic MGP_CASTEiJ_T0029171.1 MGP_CASTEiJ_G0017785.1 mouse_genomes_project 11 65038124 65136603 - MGP_CASTEiJ_P0029171 Myocd protein_coding protein_coding MGP_CASTEiJ_T0029172.1 MGP_CASTEiJ_G0017785.1 mouse_genomes_project 11 65038136 65136651 - MGP_CASTEiJ_P0029172 Myocd protein_coding protein_coding MGP_CASTEiJ_T0029173.1 MGP_CASTEiJ_G0017785.1 mouse_genomes_project 11 65038328 65043742 - Myocd protein_coding processed_transcript MGP_CASTEiJ_T0029174.1 MGP_CASTEiJ_G0017785.1 mouse_genomes_project 11 65039830 65136617 - MGP_CASTEiJ_P0029174 Myocd protein_coding unknown_likely_coding MGP_CASTEiJ_T0029175.1 MGP_CASTEiJ_G0017785.1 mouse_genomes_project 11 65040008 65083115 - MGP_CASTEiJ_P0029175 Myocd protein_coding protein_coding MGP_CASTEiJ_T0029176.1 MGP_CASTEiJ_G0017785.1 mouse_genomes_project 11 65059046 65068457 - MGP_CASTEiJ_P0029176 Myocd protein_coding protein_coding MGP_CASTEiJ_T0029177.1 MGP_CASTEiJ_G0017785.1 mouse_genomes_project 11 65088289 65136516 - Myocd protein_coding processed_transcript MGP_CASTEiJ_T0032056.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104018666 104032935 - Becn1 protein_coding retained_intron MGP_CASTEiJ_T0032057.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104018666 104032943 - Becn1 protein_coding retained_intron MGP_CASTEiJ_T0032058.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104018666 104032969 - MGP_CASTEiJ_P0032058 Becn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032059.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104019101 104032844 - MGP_CASTEiJ_P0032059 Becn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032060.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104019101 104032846 - MGP_CASTEiJ_P0032060 Becn1 protein_coding protein_coding MGP_CASTEiJ_T0032061.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104019274 104032920 - MGP_CASTEiJ_P0032061 Becn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032062.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104019286 104024676 - Becn1 protein_coding retained_intron MGP_CASTEiJ_T0032063.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104020279 104023135 - Becn1 protein_coding processed_transcript MGP_CASTEiJ_T0032064.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104020885 104032420 - MGP_CASTEiJ_P0032064 Becn1 protein_coding protein_coding MGP_CASTEiJ_T0032065.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104021808 104026947 - MGP_CASTEiJ_P0032065 Becn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032066.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104021924 104032921 - MGP_CASTEiJ_P0032066 Becn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032067.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104021955 104026076 - Becn1 protein_coding retained_intron MGP_CASTEiJ_T0032068.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104026186 104032889 - MGP_CASTEiJ_P0032068 Becn1 protein_coding protein_coding MGP_CASTEiJ_T0032069.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104026546 104032932 - MGP_CASTEiJ_P0032069 Becn1 protein_coding protein_coding MGP_CASTEiJ_T0032070.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104026865 104032923 - Becn1 protein_coding retained_intron MGP_CASTEiJ_T0032071.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104028725 104032938 - Becn1 protein_coding processed_transcript MGP_CASTEiJ_T0032072.1 MGP_CASTEiJ_G0018498.1 mouse_genomes_project 11 104032143 104032924 - Becn1 protein_coding retained_intron MGP_CASTEiJ_T0027123.1 MGP_CASTEiJ_G0017292.1 mouse_genomes_project 11 999498 1006054 - Ccdc157 protein_coding processed_transcript MGP_CASTEiJ_T0027124.1 MGP_CASTEiJ_G0017292.1 mouse_genomes_project 11 999498 1018444 - MGP_CASTEiJ_P0027124 Ccdc157 protein_coding protein_coding MGP_CASTEiJ_T0027125.1 MGP_CASTEiJ_G0017292.1 mouse_genomes_project 11 999498 1018446 - MGP_CASTEiJ_P0027125 Ccdc157 protein_coding protein_coding MGP_CASTEiJ_T0027126.1 MGP_CASTEiJ_G0017292.1 mouse_genomes_project 11 1007202 1018371 - Ccdc157 protein_coding processed_transcript MGP_CASTEiJ_T0027127.1 MGP_CASTEiJ_G0017292.1 mouse_genomes_project 11 1008390 1018371 - Ccdc157 protein_coding processed_transcript MGP_CASTEiJ_T0027128.1 MGP_CASTEiJ_G0017292.1 mouse_genomes_project 11 1009850 1018405 - Ccdc157 protein_coding processed_transcript MGP_CASTEiJ_T0030761.1 MGP_CASTEiJ_G0018158.1 mouse_genomes_project 11 84612577 84634951 - MGP_CASTEiJ_P0030761 Mmp28 protein_coding protein_coding MGP_CASTEiJ_T0030762.1 MGP_CASTEiJ_G0018158.1 mouse_genomes_project 11 84613683 84634890 - MGP_CASTEiJ_P0030762 Mmp28 protein_coding protein_coding MGP_CASTEiJ_T0030763.1 MGP_CASTEiJ_G0018158.1 mouse_genomes_project 11 84613683 84635000 - MGP_CASTEiJ_P0030763 Mmp28 protein_coding protein_coding MGP_CASTEiJ_T0030764.1 MGP_CASTEiJ_G0018158.1 mouse_genomes_project 11 84614871 84634921 - MGP_CASTEiJ_P0030764 Mmp28 protein_coding protein_coding MGP_CASTEiJ_T0030765.1 MGP_CASTEiJ_G0018158.1 mouse_genomes_project 11 84623215 84635000 - Mmp28 protein_coding processed_transcript MGP_CASTEiJ_T0028189.1 MGP_CASTEiJ_G0017545.1 mouse_genomes_project 11 48212643 48213677 + MGP_CASTEiJ_P0028189 Olfr1384 protein_coding protein_coding MGP_CASTEiJ_T0029800.1 MGP_CASTEiJ_G0017922.1 mouse_genomes_project 11 70906079 70939310 + MGP_CASTEiJ_P0029800 Kif1c protein_coding protein_coding MGP_CASTEiJ_T0029801.1 MGP_CASTEiJ_G0017922.1 mouse_genomes_project 11 70906079 70913132 + MGP_CASTEiJ_P0029801 Kif1c protein_coding protein_coding MGP_CASTEiJ_T0029802.1 MGP_CASTEiJ_G0017922.1 mouse_genomes_project 11 70906092 70937726 + MGP_CASTEiJ_P0029802 Kif1c protein_coding protein_coding MGP_CASTEiJ_T0029803.1 MGP_CASTEiJ_G0017922.1 mouse_genomes_project 11 70906107 70937763 + MGP_CASTEiJ_P0029803 Kif1c protein_coding protein_coding MGP_CASTEiJ_T0029804.1 MGP_CASTEiJ_G0017922.1 mouse_genomes_project 11 70906181 70939310 + MGP_CASTEiJ_P0029804 Kif1c protein_coding protein_coding MGP_CASTEiJ_T0029750.1 MGP_CASTEiJ_G0017913.1 mouse_genomes_project 11 70802199 70803227 + MGP_CASTEiJ_P0029750 4930544D05Rik protein_coding protein_coding MGP_CASTEiJ_T0029751.1 MGP_CASTEiJ_G0017913.1 mouse_genomes_project 11 70802245 70803222 + 4930544D05Rik protein_coding retained_intron MGP_CASTEiJ_T0029752.1 MGP_CASTEiJ_G0017913.1 mouse_genomes_project 11 70802248 70803242 + MGP_CASTEiJ_P0029752 4930544D05Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029753.1 MGP_CASTEiJ_G0017913.1 mouse_genomes_project 11 70802261 70803229 + MGP_CASTEiJ_P0029753 4930544D05Rik protein_coding protein_coding MGP_CASTEiJ_T0003075.1 MGP_CASTEiJ_G0002865.1 mouse_genomes_project 11 59317169 59325616 + Gm16062 antisense antisense MGP_CASTEiJ_T0027246.1 MGP_CASTEiJ_G0017315.1 mouse_genomes_project 11 2114042 2186342 - MGP_CASTEiJ_P0027246 Kremen1 protein_coding protein_coding MGP_CASTEiJ_T0027247.1 MGP_CASTEiJ_G0017315.1 mouse_genomes_project 11 2126488 2166213 - MGP_CASTEiJ_P0027247 Kremen1 protein_coding protein_coding MGP_CASTEiJ_T0030585.1 MGP_CASTEiJ_G0018110.1 mouse_genomes_project 11 80453035 80563027 + MGP_CASTEiJ_P0030585 Rab11fip4 protein_coding protein_coding MGP_CASTEiJ_T0030586.1 MGP_CASTEiJ_G0018110.1 mouse_genomes_project 11 80525540 80548674 + MGP_CASTEiJ_P0030586 Rab11fip4 protein_coding protein_coding MGP_CASTEiJ_T0028321.1 MGP_CASTEiJ_G0017576.1 mouse_genomes_project 11 49846108 49847885 + MGP_CASTEiJ_P0028321 Olfr54 protein_coding protein_coding MGP_CASTEiJ_T0028608.1 MGP_CASTEiJ_G0017646.1 mouse_genomes_project 11 54579079 54606051 - MGP_CASTEiJ_P0028608 Sparc protein_coding protein_coding MGP_CASTEiJ_T0028609.1 MGP_CASTEiJ_G0017646.1 mouse_genomes_project 11 54579080 54605875 - MGP_CASTEiJ_P0028609 Sparc protein_coding protein_coding MGP_CASTEiJ_T0028610.1 MGP_CASTEiJ_G0017646.1 mouse_genomes_project 11 54579963 54584310 - Sparc protein_coding processed_transcript MGP_CASTEiJ_T0028611.1 MGP_CASTEiJ_G0017646.1 mouse_genomes_project 11 54579998 54612109 - MGP_CASTEiJ_P0028611 Sparc protein_coding unknown_likely_coding MGP_CASTEiJ_T0028612.1 MGP_CASTEiJ_G0017646.1 mouse_genomes_project 11 54579998 54612109 - MGP_CASTEiJ_P0028612 Sparc protein_coding unknown_likely_coding MGP_CASTEiJ_T0028613.1 MGP_CASTEiJ_G0017646.1 mouse_genomes_project 11 54580092 54586797 - Sparc protein_coding processed_transcript MGP_CASTEiJ_T0028614.1 MGP_CASTEiJ_G0017646.1 mouse_genomes_project 11 54583987 54605875 - MGP_CASTEiJ_P0028614 Sparc protein_coding protein_coding MGP_CASTEiJ_T0028615.1 MGP_CASTEiJ_G0017646.1 mouse_genomes_project 11 54595169 54605877 - Sparc protein_coding processed_transcript MGP_CASTEiJ_T0012171.1 MGP_CASTEiJ_G0010334.1 mouse_genomes_project 11 18916038 18916251 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032579.1 MGP_CASTEiJ_G0018593.1 mouse_genomes_project 11 109085481 109097701 + MGP_CASTEiJ_P0032579 Ace3 protein_coding protein_coding MGP_CASTEiJ_T0029434.1 MGP_CASTEiJ_G0017847.1 mouse_genomes_project 11 69687486 69693578 - MGP_CASTEiJ_P0029434 Atp1b2 protein_coding protein_coding MGP_CASTEiJ_T0029435.1 MGP_CASTEiJ_G0017847.1 mouse_genomes_project 11 69687491 69693690 - Atp1b2 protein_coding processed_transcript MGP_CASTEiJ_T0029436.1 MGP_CASTEiJ_G0017847.1 mouse_genomes_project 11 69688412 69690490 - MGP_CASTEiJ_P0029436 Atp1b2 protein_coding protein_coding MGP_CASTEiJ_T0029437.1 MGP_CASTEiJ_G0017847.1 mouse_genomes_project 11 69689106 69691362 - Atp1b2 protein_coding processed_transcript MGP_CASTEiJ_T0029438.1 MGP_CASTEiJ_G0017847.1 mouse_genomes_project 11 69689892 69690911 - Atp1b2 protein_coding processed_transcript MGP_CASTEiJ_T0031140.1 MGP_CASTEiJ_G0018249.1 mouse_genomes_project 11 92189556 92348718 - MGP_CASTEiJ_P0031140 Stxbp4 protein_coding protein_coding MGP_CASTEiJ_T0031141.1 MGP_CASTEiJ_G0018249.1 mouse_genomes_project 11 92206583 92260583 - MGP_CASTEiJ_P0031141 Stxbp4 protein_coding protein_coding MGP_CASTEiJ_T0031142.1 MGP_CASTEiJ_G0018249.1 mouse_genomes_project 11 92245797 92348696 - MGP_CASTEiJ_P0031142 Stxbp4 protein_coding protein_coding MGP_CASTEiJ_T0031143.1 MGP_CASTEiJ_G0018249.1 mouse_genomes_project 11 92305178 92348699 - MGP_CASTEiJ_P0031143 Stxbp4 protein_coding protein_coding MGP_CASTEiJ_T0031144.1 MGP_CASTEiJ_G0018249.1 mouse_genomes_project 11 92309885 92348710 - MGP_CASTEiJ_P0031144 Stxbp4 protein_coding protein_coding MGP_CASTEiJ_T0031145.1 MGP_CASTEiJ_G0018249.1 mouse_genomes_project 11 92326865 92341514 - MGP_CASTEiJ_P0031145 Stxbp4 protein_coding protein_coding MGP_CASTEiJ_T0031146.1 MGP_CASTEiJ_G0018249.1 mouse_genomes_project 11 92340810 92348707 - Stxbp4 protein_coding processed_transcript MGP_CASTEiJ_T0012378.1 MGP_CASTEiJ_G0010541.1 mouse_genomes_project 11 102599366 102599825 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003175.1 MGP_CASTEiJ_G0002944.1 mouse_genomes_project 11 100805238 100806025 - antisense antisense MGP_CASTEiJ_T0030416.1 MGP_CASTEiJ_G0018069.1 mouse_genomes_project 11 78810253 78817241 - Eral1 protein_coding retained_intron MGP_CASTEiJ_T0030417.1 MGP_CASTEiJ_G0018069.1 mouse_genomes_project 11 78810253 78817241 - MGP_CASTEiJ_P0030417 Eral1 protein_coding protein_coding MGP_CASTEiJ_T0030418.1 MGP_CASTEiJ_G0018069.1 mouse_genomes_project 11 78811595 78813037 - Eral1 protein_coding retained_intron MGP_CASTEiJ_T0100408.1 MGP_CASTEiJ_G0037321.1 mouse_genomes_project 11 296112 296229 - Gm24439 snoRNA snoRNA MGP_CASTEiJ_T0009432.1 MGP_CASTEiJ_G0007620.1 mouse_genomes_project 11 52482640 52482711 + Mir6920 miRNA miRNA MGP_CASTEiJ_T0028443.1 MGP_CASTEiJ_G0017607.1 mouse_genomes_project 11 52501789 52504687 - MGP_CASTEiJ_P0028443 Uqcrq protein_coding protein_coding MGP_CASTEiJ_T0028444.1 MGP_CASTEiJ_G0017607.1 mouse_genomes_project 11 52502817 52504691 - Uqcrq protein_coding processed_transcript MGP_CASTEiJ_T0028445.1 MGP_CASTEiJ_G0017607.1 mouse_genomes_project 11 52502817 52504687 - MGP_CASTEiJ_P0028445 Uqcrq protein_coding protein_coding MGP_CASTEiJ_T0028446.1 MGP_CASTEiJ_G0017607.1 mouse_genomes_project 11 52502817 52504294 - MGP_CASTEiJ_P0028446 Uqcrq protein_coding protein_coding MGP_CASTEiJ_T0027947.1 MGP_CASTEiJ_G0017477.1 mouse_genomes_project 11 33902088 34051363 - MGP_CASTEiJ_P0027947 Wwc1 protein_coding protein_coding MGP_CASTEiJ_T0027948.1 MGP_CASTEiJ_G0017477.1 mouse_genomes_project 11 33917361 33918721 - Wwc1 protein_coding processed_transcript MGP_CASTEiJ_T0027949.1 MGP_CASTEiJ_G0017477.1 mouse_genomes_project 11 33933648 33939973 - Wwc1 protein_coding processed_transcript MGP_CASTEiJ_T0031976.1 MGP_CASTEiJ_G0018480.1 mouse_genomes_project 11 103717315 103729245 + Atp6v0a1 protein_coding processed_transcript MGP_CASTEiJ_T0031977.1 MGP_CASTEiJ_G0018480.1 mouse_genomes_project 11 103717315 103755959 + Atp6v0a1 protein_coding processed_transcript MGP_CASTEiJ_T0031978.1 MGP_CASTEiJ_G0018480.1 mouse_genomes_project 11 103717315 103773350 + MGP_CASTEiJ_P0031978 Atp6v0a1 protein_coding protein_coding MGP_CASTEiJ_T0031979.1 MGP_CASTEiJ_G0018480.1 mouse_genomes_project 11 103717315 103774646 + MGP_CASTEiJ_P0031979 Atp6v0a1 protein_coding protein_coding MGP_CASTEiJ_T0031980.1 MGP_CASTEiJ_G0018480.1 mouse_genomes_project 11 103717350 103774640 + MGP_CASTEiJ_P0031980 Atp6v0a1 protein_coding protein_coding MGP_CASTEiJ_T0031981.1 MGP_CASTEiJ_G0018480.1 mouse_genomes_project 11 103718519 103728351 + MGP_CASTEiJ_P0031981 Atp6v0a1 protein_coding protein_coding MGP_CASTEiJ_T0031982.1 MGP_CASTEiJ_G0018480.1 mouse_genomes_project 11 103719684 103774646 + MGP_CASTEiJ_P0031982 Atp6v0a1 protein_coding protein_coding MGP_CASTEiJ_T0031983.1 MGP_CASTEiJ_G0018480.1 mouse_genomes_project 11 103728971 103736750 + Atp6v0a1 protein_coding processed_transcript MGP_CASTEiJ_T0031984.1 MGP_CASTEiJ_G0018480.1 mouse_genomes_project 11 103749709 103760368 + Atp6v0a1 protein_coding processed_transcript MGP_CASTEiJ_T0031985.1 MGP_CASTEiJ_G0018480.1 mouse_genomes_project 11 103754952 103755962 + Atp6v0a1 protein_coding processed_transcript MGP_CASTEiJ_T0027263.1 MGP_CASTEiJ_G0017320.1 mouse_genomes_project 11 2638661 2643489 - MGP_CASTEiJ_P0027263 Mrps24 protein_coding protein_coding MGP_CASTEiJ_T0027264.1 MGP_CASTEiJ_G0017320.1 mouse_genomes_project 11 2638996 2643469 - Mrps24 protein_coding retained_intron MGP_CASTEiJ_T0027265.1 MGP_CASTEiJ_G0017320.1 mouse_genomes_project 11 2639193 2651191 - Mrps24 protein_coding processed_transcript MGP_CASTEiJ_T0027266.1 MGP_CASTEiJ_G0017320.1 mouse_genomes_project 11 2639225 2643492 - Mrps24 protein_coding retained_intron MGP_CASTEiJ_T0027267.1 MGP_CASTEiJ_G0017320.1 mouse_genomes_project 11 2639330 2643444 - Mrps24 protein_coding retained_intron MGP_CASTEiJ_T0030969.1 MGP_CASTEiJ_G0018209.1 mouse_genomes_project 11 88559857 88575940 + MGP_CASTEiJ_P0030969 Ska2 protein_coding protein_coding MGP_CASTEiJ_T0030970.1 MGP_CASTEiJ_G0018209.1 mouse_genomes_project 11 88559874 88575939 + Ska2 protein_coding processed_transcript MGP_CASTEiJ_T0030971.1 MGP_CASTEiJ_G0018209.1 mouse_genomes_project 11 88566465 88573362 + Ska2 protein_coding processed_transcript MGP_CASTEiJ_T0029993.1 MGP_CASTEiJ_G0017964.1 mouse_genomes_project 11 73599559 73614861 - MGP_CASTEiJ_P0029993 Ctns protein_coding protein_coding MGP_CASTEiJ_T0029994.1 MGP_CASTEiJ_G0017964.1 mouse_genomes_project 11 73599560 73614861 - MGP_CASTEiJ_P0029994 Ctns protein_coding protein_coding MGP_CASTEiJ_T0029995.1 MGP_CASTEiJ_G0017964.1 mouse_genomes_project 11 73600231 73614498 - MGP_CASTEiJ_P0029995 Ctns protein_coding unknown_likely_coding MGP_CASTEiJ_T0029996.1 MGP_CASTEiJ_G0017964.1 mouse_genomes_project 11 73600231 73614788 - MGP_CASTEiJ_P0029996 Ctns protein_coding unknown_likely_coding MGP_CASTEiJ_T0029997.1 MGP_CASTEiJ_G0017964.1 mouse_genomes_project 11 73602315 73604770 - Ctns protein_coding retained_intron MGP_CASTEiJ_T0029998.1 MGP_CASTEiJ_G0017964.1 mouse_genomes_project 11 73607274 73614840 - Ctns protein_coding retained_intron MGP_CASTEiJ_T0029999.1 MGP_CASTEiJ_G0017964.1 mouse_genomes_project 11 73607676 73614814 - Ctns protein_coding processed_transcript MGP_CASTEiJ_T0010961.1 MGP_CASTEiJ_G0009149.1 mouse_genomes_project 11 487549 487726 - Gm27624 misc_RNA misc_RNA MGP_CASTEiJ_T0101991.1 MGP_CASTEiJ_G0038716.1 mouse_genomes_project 11 74168699 74169258 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101726.1 MGP_CASTEiJ_G0038536.1 mouse_genomes_project 11 73927061 73927997 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0101727.1 MGP_CASTEiJ_G0038536.1 mouse_genomes_project 11 73927263 73928014 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0027139.1 MGP_CASTEiJ_G0017295.1 mouse_genomes_project 11 1076261 1080419 + MGP_CASTEiJ_P0027139 Gatsl3 protein_coding protein_coding MGP_CASTEiJ_T0031205.1 MGP_CASTEiJ_G0018261.1 mouse_genomes_project 11 96119665 96128415 - MGP_CASTEiJ_P0031205 Wfikkn2 protein_coding protein_coding MGP_CASTEiJ_T0031206.1 MGP_CASTEiJ_G0018261.1 mouse_genomes_project 11 96128154 96131723 - Wfikkn2 protein_coding processed_transcript MGP_CASTEiJ_T0003022.1 MGP_CASTEiJ_G0002817.1 mouse_genomes_project 11 16317159 16319204 + Gm16140 antisense antisense MGP_CASTEiJ_T0003023.1 MGP_CASTEiJ_G0002817.1 mouse_genomes_project 11 16317161 16318813 + Gm16140 antisense antisense MGP_CASTEiJ_T0029346.1 MGP_CASTEiJ_G0017825.1 mouse_genomes_project 11 69120804 69122993 + MGP_CASTEiJ_P0029346 Tmem107 protein_coding protein_coding MGP_CASTEiJ_T0029347.1 MGP_CASTEiJ_G0017825.1 mouse_genomes_project 11 69120809 69123371 + MGP_CASTEiJ_P0029347 Tmem107 protein_coding protein_coding MGP_CASTEiJ_T0029348.1 MGP_CASTEiJ_G0017825.1 mouse_genomes_project 11 69120811 69122786 + Tmem107 protein_coding processed_transcript MGP_CASTEiJ_T0029349.1 MGP_CASTEiJ_G0017825.1 mouse_genomes_project 11 69120852 69121502 + Tmem107 protein_coding processed_transcript MGP_CASTEiJ_T0029350.1 MGP_CASTEiJ_G0017825.1 mouse_genomes_project 11 69120871 69123339 + Tmem107 protein_coding processed_transcript MGP_CASTEiJ_T0029351.1 MGP_CASTEiJ_G0017825.1 mouse_genomes_project 11 69120916 69122987 + Tmem107 protein_coding processed_transcript MGP_CASTEiJ_T0029352.1 MGP_CASTEiJ_G0017825.1 mouse_genomes_project 11 69120934 69122779 + Tmem107 protein_coding processed_transcript MGP_CASTEiJ_T0029353.1 MGP_CASTEiJ_G0017825.1 mouse_genomes_project 11 69121300 69122523 + Tmem107 protein_coding processed_transcript MGP_CASTEiJ_T0028410.1 MGP_CASTEiJ_G0017597.1 mouse_genomes_project 11 51038617 51072916 + MGP_CASTEiJ_P0028410 Ppp2ca protein_coding protein_coding MGP_CASTEiJ_T0028411.1 MGP_CASTEiJ_G0017597.1 mouse_genomes_project 11 51062098 51063048 + Ppp2ca protein_coding retained_intron MGP_CASTEiJ_T0031798.1 MGP_CASTEiJ_G0018411.1 mouse_genomes_project 11 102142617 102143658 - MGP_CASTEiJ_P0031798 Krtap1-5 protein_coding protein_coding MGP_CASTEiJ_T0006049.1 MGP_CASTEiJ_G0005063.1 mouse_genomes_project 11 30799615 30800579 - 4930555O08Rik lincRNA lincRNA MGP_CASTEiJ_T0030574.1 MGP_CASTEiJ_G0018107.1 mouse_genomes_project 11 80372485 80391203 - MGP_CASTEiJ_P0030574 protein_coding protein_coding MGP_CASTEiJ_T0030575.1 MGP_CASTEiJ_G0018107.1 mouse_genomes_project 11 80372485 80391173 - MGP_CASTEiJ_P0030575 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009460.1 MGP_CASTEiJ_G0007648.1 mouse_genomes_project 11 72751128 72751237 + Mir6338 miRNA miRNA MGP_CASTEiJ_T0031210.1 MGP_CASTEiJ_G0018263.1 mouse_genomes_project 11 96179088 96215317 - MGP_CASTEiJ_P0031210 Luc7l3 protein_coding protein_coding MGP_CASTEiJ_T0031211.1 MGP_CASTEiJ_G0018263.1 mouse_genomes_project 11 96182327 96188334 - MGP_CASTEiJ_P0031211 Luc7l3 protein_coding protein_coding MGP_CASTEiJ_T0031212.1 MGP_CASTEiJ_G0018263.1 mouse_genomes_project 11 96182327 96215347 - MGP_CASTEiJ_P0031212 Luc7l3 protein_coding protein_coding MGP_CASTEiJ_T0031213.1 MGP_CASTEiJ_G0018263.1 mouse_genomes_project 11 96182405 96215347 - MGP_CASTEiJ_P0031213 Luc7l3 protein_coding protein_coding MGP_CASTEiJ_T0031214.1 MGP_CASTEiJ_G0018263.1 mouse_genomes_project 11 96182405 96215347 - MGP_CASTEiJ_P0031214 Luc7l3 protein_coding protein_coding MGP_CASTEiJ_T0031215.1 MGP_CASTEiJ_G0018263.1 mouse_genomes_project 11 96182595 96184486 - MGP_CASTEiJ_P0031215 Luc7l3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031216.1 MGP_CASTEiJ_G0018263.1 mouse_genomes_project 11 96184036 96215254 - MGP_CASTEiJ_P0031216 Luc7l3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031217.1 MGP_CASTEiJ_G0018263.1 mouse_genomes_project 11 96188273 96189503 - Luc7l3 protein_coding retained_intron MGP_CASTEiJ_T0031218.1 MGP_CASTEiJ_G0018263.1 mouse_genomes_project 11 96188281 96190324 - Luc7l3 protein_coding processed_transcript MGP_CASTEiJ_T0031219.1 MGP_CASTEiJ_G0018263.1 mouse_genomes_project 11 96188322 96192287 - Luc7l3 protein_coding retained_intron MGP_CASTEiJ_T0031826.1 MGP_CASTEiJ_G0018439.1 mouse_genomes_project 11 102629637 102638754 - MGP_CASTEiJ_P0031826 protein_coding protein_coding MGP_CASTEiJ_T0009471.1 MGP_CASTEiJ_G0007659.1 mouse_genomes_project 11 78810047 78810119 + Mir451a miRNA miRNA MGP_CASTEiJ_T0031815.1 MGP_CASTEiJ_G0018428.1 mouse_genomes_project 11 102438715 102439980 - MGP_CASTEiJ_P0031815 2300003K06Rik protein_coding protein_coding MGP_CASTEiJ_T0012365.1 MGP_CASTEiJ_G0010528.1 mouse_genomes_project 11 97866098 97866314 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006161.1 MGP_CASTEiJ_G0005151.1 mouse_genomes_project 11 97979630 97980643 - Gm11527 lincRNA lincRNA MGP_CASTEiJ_T0028549.1 MGP_CASTEiJ_G0017632.1 mouse_genomes_project 11 53584743 53668487 + MGP_CASTEiJ_P0028549 Fnip1 protein_coding protein_coding MGP_CASTEiJ_T0028550.1 MGP_CASTEiJ_G0017632.1 mouse_genomes_project 11 53613250 53651107 + MGP_CASTEiJ_P0028550 Fnip1 protein_coding protein_coding MGP_CASTEiJ_T0032659.1 MGP_CASTEiJ_G0018615.1 mouse_genomes_project 11 109904581 109923385 + MGP_CASTEiJ_P0032659 Milr1 protein_coding protein_coding MGP_CASTEiJ_T0032660.1 MGP_CASTEiJ_G0018615.1 mouse_genomes_project 11 109904595 109922134 + MGP_CASTEiJ_P0032660 Milr1 protein_coding protein_coding MGP_CASTEiJ_T0032661.1 MGP_CASTEiJ_G0018615.1 mouse_genomes_project 11 109904595 109921712 + MGP_CASTEiJ_P0032661 Milr1 protein_coding protein_coding MGP_CASTEiJ_T0032662.1 MGP_CASTEiJ_G0018615.1 mouse_genomes_project 11 109904595 109921712 + MGP_CASTEiJ_P0032662 Milr1 protein_coding protein_coding MGP_CASTEiJ_T0032663.1 MGP_CASTEiJ_G0018615.1 mouse_genomes_project 11 109904620 109923310 + MGP_CASTEiJ_P0032663 Milr1 protein_coding protein_coding MGP_CASTEiJ_T0032664.1 MGP_CASTEiJ_G0018615.1 mouse_genomes_project 11 109904623 109922352 + MGP_CASTEiJ_P0032664 Milr1 protein_coding protein_coding MGP_CASTEiJ_T0032665.1 MGP_CASTEiJ_G0018615.1 mouse_genomes_project 11 109904623 109923308 + MGP_CASTEiJ_P0032665 Milr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032666.1 MGP_CASTEiJ_G0018615.1 mouse_genomes_project 11 109909694 109923311 + MGP_CASTEiJ_P0032666 Milr1 protein_coding protein_coding MGP_CASTEiJ_T0006032.1 MGP_CASTEiJ_G0005052.1 mouse_genomes_project 11 22348499 22359188 - Gm10466 lincRNA lincRNA MGP_CASTEiJ_T0006197.1 MGP_CASTEiJ_G0005177.1 mouse_genomes_project 11 117998803 118000085 + Gm11691 lincRNA lincRNA MGP_CASTEiJ_T0003030.1 MGP_CASTEiJ_G0002823.1 mouse_genomes_project 11 27340972 27343201 + Gm12089 antisense antisense MGP_CASTEiJ_T0030906.1 MGP_CASTEiJ_G0018192.1 mouse_genomes_project 11 87201915 87211318 + MGP_CASTEiJ_P0030906 Tbx2 protein_coding protein_coding MGP_CASTEiJ_T0029894.1 MGP_CASTEiJ_G0017938.1 mouse_genomes_project 11 72514189 72515564 - 4933427D14Rik protein_coding processed_transcript MGP_CASTEiJ_T0029895.1 MGP_CASTEiJ_G0017938.1 mouse_genomes_project 11 72514189 72567241 - MGP_CASTEiJ_P0029895 4933427D14Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029896.1 MGP_CASTEiJ_G0017938.1 mouse_genomes_project 11 72514190 72567049 - MGP_CASTEiJ_P0029896 4933427D14Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029897.1 MGP_CASTEiJ_G0017938.1 mouse_genomes_project 11 72514357 72563552 - MGP_CASTEiJ_P0029897 4933427D14Rik protein_coding protein_coding MGP_CASTEiJ_T0029898.1 MGP_CASTEiJ_G0017938.1 mouse_genomes_project 11 72515653 72535182 - 4933427D14Rik protein_coding processed_transcript MGP_CASTEiJ_T0029899.1 MGP_CASTEiJ_G0017938.1 mouse_genomes_project 11 72555226 72567213 - MGP_CASTEiJ_P0029899 4933427D14Rik protein_coding protein_coding MGP_CASTEiJ_T0029900.1 MGP_CASTEiJ_G0017938.1 mouse_genomes_project 11 72558225 72567002 - 4933427D14Rik protein_coding processed_transcript MGP_CASTEiJ_T0029901.1 MGP_CASTEiJ_G0017938.1 mouse_genomes_project 11 72558472 72562390 - 4933427D14Rik protein_coding processed_transcript MGP_CASTEiJ_T0032332.1 MGP_CASTEiJ_G0018543.1 mouse_genomes_project 11 105323146 105410457 - MGP_CASTEiJ_P0032332 Gpatch8 protein_coding protein_coding MGP_CASTEiJ_T0032333.1 MGP_CASTEiJ_G0018543.1 mouse_genomes_project 11 105324440 105357133 - Gpatch8 protein_coding processed_transcript MGP_CASTEiJ_T0032334.1 MGP_CASTEiJ_G0018543.1 mouse_genomes_project 11 105356179 105410457 - Gpatch8 protein_coding processed_transcript MGP_CASTEiJ_T0032335.1 MGP_CASTEiJ_G0018543.1 mouse_genomes_project 11 105356858 105410457 - Gpatch8 protein_coding processed_transcript MGP_CASTEiJ_T0032336.1 MGP_CASTEiJ_G0018543.1 mouse_genomes_project 11 105390221 105410434 - Gpatch8 protein_coding processed_transcript MGP_CASTEiJ_T0032337.1 MGP_CASTEiJ_G0018543.1 mouse_genomes_project 11 105391111 105410650 - Gpatch8 protein_coding processed_transcript MGP_CASTEiJ_T0029188.1 MGP_CASTEiJ_G0017788.1 mouse_genomes_project 11 65726408 66069453 - MGP_CASTEiJ_P0029188 Dnah9 protein_coding protein_coding MGP_CASTEiJ_T0029189.1 MGP_CASTEiJ_G0017788.1 mouse_genomes_project 11 65726529 65907579 - MGP_CASTEiJ_P0029189 Dnah9 protein_coding protein_coding MGP_CASTEiJ_T0029190.1 MGP_CASTEiJ_G0017788.1 mouse_genomes_project 11 65746464 65751031 - Dnah9 protein_coding retained_intron MGP_CASTEiJ_T0029191.1 MGP_CASTEiJ_G0017788.1 mouse_genomes_project 11 65798046 65820024 - MGP_CASTEiJ_P0029191 Dnah9 protein_coding protein_coding MGP_CASTEiJ_T0029192.1 MGP_CASTEiJ_G0017788.1 mouse_genomes_project 11 66019891 66069364 - MGP_CASTEiJ_P0029192 Dnah9 protein_coding protein_coding MGP_CASTEiJ_T0029193.1 MGP_CASTEiJ_G0017788.1 mouse_genomes_project 11 66059640 66069471 - Dnah9 protein_coding retained_intron MGP_CASTEiJ_T0028019.1 MGP_CASTEiJ_G0017493.1 mouse_genomes_project 11 42022071 42024041 + MGP_CASTEiJ_P0028019 4933415A04Rik protein_coding protein_coding MGP_CASTEiJ_T0027697.1 MGP_CASTEiJ_G0017414.1 mouse_genomes_project 11 24159237 24280268 - MGP_CASTEiJ_P0027697 Vrk2 protein_coding protein_coding MGP_CASTEiJ_T0027698.1 MGP_CASTEiJ_G0017414.1 mouse_genomes_project 11 24159319 24282476 - MGP_CASTEiJ_P0027698 Vrk2 protein_coding protein_coding MGP_CASTEiJ_T0027699.1 MGP_CASTEiJ_G0017414.1 mouse_genomes_project 11 24225290 24282195 - Vrk2 protein_coding retained_intron MGP_CASTEiJ_T0027700.1 MGP_CASTEiJ_G0017414.1 mouse_genomes_project 11 24225706 24243020 - Vrk2 protein_coding processed_transcript MGP_CASTEiJ_T0027701.1 MGP_CASTEiJ_G0017414.1 mouse_genomes_project 11 24236658 24282479 - Vrk2 protein_coding retained_intron MGP_CASTEiJ_T0027702.1 MGP_CASTEiJ_G0017414.1 mouse_genomes_project 11 24239108 24282555 - MGP_CASTEiJ_P0027702 Vrk2 protein_coding protein_coding MGP_CASTEiJ_T0027703.1 MGP_CASTEiJ_G0017414.1 mouse_genomes_project 11 24271824 24282176 - Vrk2 protein_coding processed_transcript MGP_CASTEiJ_T0098322.1 MGP_CASTEiJ_G0035253.1 mouse_genomes_project 11 43144711 43145166 + pseudogene pseudogene MGP_CASTEiJ_T0006113.1 MGP_CASTEiJ_G0005118.1 mouse_genomes_project 11 73418310 73421280 - 4732414G09Rik lincRNA lincRNA MGP_CASTEiJ_T0006114.1 MGP_CASTEiJ_G0005118.1 mouse_genomes_project 11 73418310 73421243 - 4732414G09Rik lincRNA lincRNA MGP_CASTEiJ_T0030527.1 MGP_CASTEiJ_G0018093.1 mouse_genomes_project 11 79303525 79315185 - MGP_CASTEiJ_P0030527 Tnfaip1 protein_coding protein_coding MGP_CASTEiJ_T0030528.1 MGP_CASTEiJ_G0018093.1 mouse_genomes_project 11 79303525 79315246 - MGP_CASTEiJ_P0030528 Tnfaip1 protein_coding protein_coding MGP_CASTEiJ_T0031252.1 MGP_CASTEiJ_G0018268.1 mouse_genomes_project 11 96407029 96419099 - MGP_CASTEiJ_P0031252 Epn3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031253.1 MGP_CASTEiJ_G0018268.1 mouse_genomes_project 11 96407033 96418885 - MGP_CASTEiJ_P0031253 Epn3 protein_coding protein_coding MGP_CASTEiJ_T0031254.1 MGP_CASTEiJ_G0018268.1 mouse_genomes_project 11 96408547 96418820 - Epn3 protein_coding processed_transcript MGP_CASTEiJ_T0031255.1 MGP_CASTEiJ_G0018268.1 mouse_genomes_project 11 96413435 96415688 - Epn3 protein_coding processed_transcript MGP_CASTEiJ_T0031256.1 MGP_CASTEiJ_G0018268.1 mouse_genomes_project 11 96413799 96416566 - Epn3 protein_coding processed_transcript MGP_CASTEiJ_T0032005.1 MGP_CASTEiJ_G0018486.1 mouse_genomes_project 11 103808869 103834000 - Fam134c protein_coding processed_transcript MGP_CASTEiJ_T0032006.1 MGP_CASTEiJ_G0018486.1 mouse_genomes_project 11 103808869 103833950 - MGP_CASTEiJ_P0032006 Fam134c protein_coding protein_coding MGP_CASTEiJ_T0032007.1 MGP_CASTEiJ_G0018486.1 mouse_genomes_project 11 103810552 103833872 - Fam134c protein_coding processed_transcript MGP_CASTEiJ_T0032008.1 MGP_CASTEiJ_G0018486.1 mouse_genomes_project 11 103810659 103834086 - MGP_CASTEiJ_P0032008 Fam134c protein_coding protein_coding MGP_CASTEiJ_T0032009.1 MGP_CASTEiJ_G0018486.1 mouse_genomes_project 11 103811135 103834000 - Fam134c protein_coding processed_transcript MGP_CASTEiJ_T0027498.1 MGP_CASTEiJ_G0017373.1 mouse_genomes_project 11 14506326 14566154 + Wdr92 protein_coding processed_transcript MGP_CASTEiJ_T0027502.1 MGP_CASTEiJ_G0017373.1 mouse_genomes_project 11 14536580 14567050 + MGP_CASTEiJ_P0027502 Wdr92 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027503.1 MGP_CASTEiJ_G0017373.1 mouse_genomes_project 11 14536604 14567036 + MGP_CASTEiJ_P0027503 Wdr92 protein_coding protein_coding MGP_CASTEiJ_T0029867.1 MGP_CASTEiJ_G0017932.1 mouse_genomes_project 11 71314031 71368718 - MGP_CASTEiJ_P0029867 Nlrp1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0029868.1 MGP_CASTEiJ_G0017932.1 mouse_genomes_project 11 71319644 71365416 - MGP_CASTEiJ_P0029868 Nlrp1a protein_coding protein_coding MGP_CASTEiJ_T0029941.1 MGP_CASTEiJ_G0017950.1 mouse_genomes_project 11 72861787 72869308 - Spns3 protein_coding processed_transcript MGP_CASTEiJ_T0029942.1 MGP_CASTEiJ_G0017950.1 mouse_genomes_project 11 72865017 72919301 - MGP_CASTEiJ_P0029942 Spns3 protein_coding protein_coding MGP_CASTEiJ_T0029943.1 MGP_CASTEiJ_G0017950.1 mouse_genomes_project 11 72865022 72919092 - MGP_CASTEiJ_P0029943 Spns3 protein_coding protein_coding MGP_CASTEiJ_T0003187.1 MGP_CASTEiJ_G0002951.1 mouse_genomes_project 11 103993765 103996914 - antisense antisense MGP_CASTEiJ_T0032943.1 MGP_CASTEiJ_G0018674.1 mouse_genomes_project 11 118901603 118914888 - MGP_CASTEiJ_P0032943 Cd300e protein_coding unknown_likely_coding MGP_CASTEiJ_T0016408.1 MGP_CASTEiJ_G0014461.1 mouse_genomes_project 11 272691 277425 + 8430429K09Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016409.1 MGP_CASTEiJ_G0014461.1 mouse_genomes_project 11 272763 277289 + 8430429K09Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016410.1 MGP_CASTEiJ_G0014461.1 mouse_genomes_project 11 272798 278669 + 8430429K09Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016411.1 MGP_CASTEiJ_G0014461.1 mouse_genomes_project 11 272798 302616 + 8430429K09Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016412.1 MGP_CASTEiJ_G0014461.1 mouse_genomes_project 11 272806 277342 + 8430429K09Rik processed_transcript processed_transcript MGP_CASTEiJ_T0028695.1 MGP_CASTEiJ_G0017677.1 mouse_genomes_project 11 57896713 57912038 - MGP_CASTEiJ_P0028695 protein_coding protein_coding MGP_CASTEiJ_T0012308.1 MGP_CASTEiJ_G0010471.1 mouse_genomes_project 11 73644300 73644519 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032978.1 MGP_CASTEiJ_G0018683.1 mouse_genomes_project 11 119180928 119206203 + MGP_CASTEiJ_P0032978 Otop2 protein_coding protein_coding MGP_CASTEiJ_T0032980.1 MGP_CASTEiJ_G0018683.1 mouse_genomes_project 11 119196403 119197398 + Otop2 protein_coding processed_transcript MGP_CASTEiJ_T0032981.1 MGP_CASTEiJ_G0018683.1 mouse_genomes_project 11 119196634 119197391 + Otop2 protein_coding processed_transcript MGP_CASTEiJ_T0032982.1 MGP_CASTEiJ_G0018683.1 mouse_genomes_project 11 119196798 119206203 + MGP_CASTEiJ_P0032982 Otop2 protein_coding protein_coding MGP_CASTEiJ_T0012274.1 MGP_CASTEiJ_G0010437.1 mouse_genomes_project 11 59993090 59993532 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012199.1 MGP_CASTEiJ_G0010362.1 mouse_genomes_project 11 27842400 27843216 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003250.1 MGP_CASTEiJ_G0003005.1 mouse_genomes_project 11 124815544 124818516 - Gm11788 antisense antisense MGP_CASTEiJ_T0099267.1 MGP_CASTEiJ_G0036180.1 mouse_genomes_project 11 95244141 95244248 - Gm24856 snRNA snRNA MGP_CASTEiJ_T0099256.1 MGP_CASTEiJ_G0036169.1 mouse_genomes_project 11 84437047 84438380 + Gm23444 snRNA snRNA MGP_CASTEiJ_T0012150.1 MGP_CASTEiJ_G0010313.1 mouse_genomes_project 11 14410519 14410769 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098323.1 MGP_CASTEiJ_G0035254.1 mouse_genomes_project 11 58670464 58670942 - pseudogene pseudogene MGP_CASTEiJ_T0012370.1 MGP_CASTEiJ_G0010533.1 mouse_genomes_project 11 99331432 99331826 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003068.1 MGP_CASTEiJ_G0002859.1 mouse_genomes_project 11 57466867 57469312 + Gm12246 antisense antisense MGP_CASTEiJ_T0100422.1 MGP_CASTEiJ_G0037335.1 mouse_genomes_project 11 18694712 18694851 - Gm23582 snoRNA snoRNA MGP_CASTEiJ_T0032385.1 MGP_CASTEiJ_G0018553.1 mouse_genomes_project 11 105789208 105790773 + MGP_CASTEiJ_P0032385 Fam187a protein_coding protein_coding MGP_CASTEiJ_T0032203.1 MGP_CASTEiJ_G0018526.1 mouse_genomes_project 11 104908470 104909628 - MGP_CASTEiJ_P0032203 Pyy protein_coding protein_coding MGP_CASTEiJ_T0032204.1 MGP_CASTEiJ_G0018526.1 mouse_genomes_project 11 104908470 104909638 - MGP_CASTEiJ_P0032204 Pyy protein_coding protein_coding MGP_CASTEiJ_T0032205.1 MGP_CASTEiJ_G0018526.1 mouse_genomes_project 11 104908474 104909222 - MGP_CASTEiJ_P0032205 Pyy protein_coding protein_coding MGP_CASTEiJ_T0032206.1 MGP_CASTEiJ_G0018526.1 mouse_genomes_project 11 104908755 104909638 - Pyy protein_coding retained_intron MGP_CASTEiJ_T0003108.1 MGP_CASTEiJ_G0002891.1 mouse_genomes_project 11 69357567 69358894 + Cntrobos antisense antisense MGP_CASTEiJ_T0028459.1 MGP_CASTEiJ_G0017611.1 mouse_genomes_project 11 52545475 52546206 - MGP_CASTEiJ_P0028459 Gm9837 protein_coding protein_coding MGP_CASTEiJ_T0030407.1 MGP_CASTEiJ_G0018067.1 mouse_genomes_project 11 78760637 78766146 + MGP_CASTEiJ_P0030407 Dhrs13 protein_coding protein_coding MGP_CASTEiJ_T0030408.1 MGP_CASTEiJ_G0018067.1 mouse_genomes_project 11 78760706 78766071 + MGP_CASTEiJ_P0030408 Dhrs13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030409.1 MGP_CASTEiJ_G0018067.1 mouse_genomes_project 11 78760709 78766144 + MGP_CASTEiJ_P0030409 Dhrs13 protein_coding protein_coding MGP_CASTEiJ_T0030410.1 MGP_CASTEiJ_G0018067.1 mouse_genomes_project 11 78760716 78761828 + MGP_CASTEiJ_P0030410 Dhrs13 protein_coding protein_coding MGP_CASTEiJ_T0032937.1 MGP_CASTEiJ_G0018670.1 mouse_genomes_project 11 118808872 118813214 - MGP_CASTEiJ_P0032937 Cd300c protein_coding protein_coding MGP_CASTEiJ_T0032938.1 MGP_CASTEiJ_G0018670.1 mouse_genomes_project 11 118808872 118813214 - MGP_CASTEiJ_P0032938 Cd300c protein_coding protein_coding MGP_CASTEiJ_T0012362.1 MGP_CASTEiJ_G0010525.1 mouse_genomes_project 11 97249830 97250220 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030914.1 MGP_CASTEiJ_G0018196.1 mouse_genomes_project 11 87596758 87641965 - MGP_CASTEiJ_P0030914 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030915.1 MGP_CASTEiJ_G0018196.1 mouse_genomes_project 11 87601657 87612656 - MGP_CASTEiJ_P0030915 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030916.1 MGP_CASTEiJ_G0018196.1 mouse_genomes_project 11 87608342 87616242 - protein_coding retained_intron MGP_CASTEiJ_T0030917.1 MGP_CASTEiJ_G0018196.1 mouse_genomes_project 11 87618909 87641930 - protein_coding retained_intron MGP_CASTEiJ_T0030918.1 MGP_CASTEiJ_G0018196.1 mouse_genomes_project 11 87619841 87623513 - protein_coding retained_intron MGP_CASTEiJ_T0030919.1 MGP_CASTEiJ_G0018196.1 mouse_genomes_project 11 87635675 87641964 - MGP_CASTEiJ_P0030919 protein_coding protein_coding MGP_CASTEiJ_T0030920.1 MGP_CASTEiJ_G0018196.1 mouse_genomes_project 11 87639752 87641943 - MGP_CASTEiJ_P0030920 protein_coding protein_coding MGP_CASTEiJ_T0030921.1 MGP_CASTEiJ_G0018196.1 mouse_genomes_project 11 87640415 87641907 - MGP_CASTEiJ_P0030921 protein_coding protein_coding MGP_CASTEiJ_T0030922.1 MGP_CASTEiJ_G0018196.1 mouse_genomes_project 11 87640742 87641730 - protein_coding retained_intron MGP_CASTEiJ_T0030923.1 MGP_CASTEiJ_G0018196.1 mouse_genomes_project 11 87640832 87641954 - protein_coding processed_transcript MGP_CASTEiJ_T0031770.1 MGP_CASTEiJ_G0018393.1 mouse_genomes_project 11 101688476 101708749 + MGP_CASTEiJ_P0031770 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0031771.1 MGP_CASTEiJ_G0018393.1 mouse_genomes_project 11 101689536 101708749 + MGP_CASTEiJ_P0031771 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0012127.1 MGP_CASTEiJ_G0010290.1 mouse_genomes_project 11 3810852 3812282 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012278.1 MGP_CASTEiJ_G0010441.1 mouse_genomes_project 11 60741889 60742611 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032010.1 MGP_CASTEiJ_G0018487.1 mouse_genomes_project 11 103834300 103840994 + MGP_CASTEiJ_P0032010 Tubg1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032778.1 MGP_CASTEiJ_G0018636.1 mouse_genomes_project 11 112695997 112734278 + MGP_CASTEiJ_P0032778 Gna13 protein_coding protein_coding MGP_CASTEiJ_T0032779.1 MGP_CASTEiJ_G0018636.1 mouse_genomes_project 11 112695997 112713533 + MGP_CASTEiJ_P0032779 Gna13 protein_coding protein_coding MGP_CASTEiJ_T0031123.1 MGP_CASTEiJ_G0018244.1 mouse_genomes_project 11 91057352 91088512 - MGP_CASTEiJ_P0031123 protein_coding protein_coding MGP_CASTEiJ_T0101994.1 MGP_CASTEiJ_G0038719.1 mouse_genomes_project 11 74702142 74704092 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0031785.1 MGP_CASTEiJ_G0018400.1 mouse_genomes_project 11 101911120 101921551 - MGP_CASTEiJ_P0031785 Krt28 protein_coding protein_coding MGP_CASTEiJ_T0033355.1 MGP_CASTEiJ_G0018747.1 mouse_genomes_project 11 120978288 121048567 + MGP_CASTEiJ_P0033355 Mgat5b protein_coding protein_coding MGP_CASTEiJ_T0033356.1 MGP_CASTEiJ_G0018747.1 mouse_genomes_project 11 121006777 121035868 + Mgat5b protein_coding processed_transcript MGP_CASTEiJ_T0033357.1 MGP_CASTEiJ_G0018747.1 mouse_genomes_project 11 121028579 121039962 + MGP_CASTEiJ_P0033357 Mgat5b protein_coding protein_coding MGP_CASTEiJ_T0033358.1 MGP_CASTEiJ_G0018747.1 mouse_genomes_project 11 121034633 121048559 + Mgat5b protein_coding retained_intron MGP_CASTEiJ_T0030067.1 MGP_CASTEiJ_G0018002.1 mouse_genomes_project 11 75098122 75121052 + MGP_CASTEiJ_P0030067 Ccdc92b protein_coding protein_coding MGP_CASTEiJ_T0030068.1 MGP_CASTEiJ_G0018002.1 mouse_genomes_project 11 75098160 75118233 + MGP_CASTEiJ_P0030068 Ccdc92b protein_coding unknown_likely_coding MGP_CASTEiJ_T0031697.1 MGP_CASTEiJ_G0018379.1 mouse_genomes_project 11 101195255 101219304 - Med24 protein_coding retained_intron MGP_CASTEiJ_T0031698.1 MGP_CASTEiJ_G0018379.1 mouse_genomes_project 11 101195255 101219917 - MGP_CASTEiJ_P0031698 Med24 protein_coding protein_coding MGP_CASTEiJ_T0031699.1 MGP_CASTEiJ_G0018379.1 mouse_genomes_project 11 101195507 101197154 - Med24 protein_coding retained_intron MGP_CASTEiJ_T0031700.1 MGP_CASTEiJ_G0018379.1 mouse_genomes_project 11 101195564 101219849 - MGP_CASTEiJ_P0031700 Med24 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031701.1 MGP_CASTEiJ_G0018379.1 mouse_genomes_project 11 101195564 101219892 - MGP_CASTEiJ_P0031701 Med24 protein_coding protein_coding MGP_CASTEiJ_T0031702.1 MGP_CASTEiJ_G0018379.1 mouse_genomes_project 11 101197100 101197925 - Med24 protein_coding retained_intron MGP_CASTEiJ_T0031703.1 MGP_CASTEiJ_G0018379.1 mouse_genomes_project 11 101197939 101198677 - Med24 protein_coding processed_transcript MGP_CASTEiJ_T0031704.1 MGP_CASTEiJ_G0018379.1 mouse_genomes_project 11 101199526 101219900 - Med24 protein_coding retained_intron MGP_CASTEiJ_T0031705.1 MGP_CASTEiJ_G0018379.1 mouse_genomes_project 11 101200330 101201767 - Med24 protein_coding retained_intron MGP_CASTEiJ_T0031706.1 MGP_CASTEiJ_G0018379.1 mouse_genomes_project 11 101208386 101209287 - Med24 protein_coding processed_transcript MGP_CASTEiJ_T0031707.1 MGP_CASTEiJ_G0018379.1 mouse_genomes_project 11 101209027 101219856 - MGP_CASTEiJ_P0031707 Med24 protein_coding protein_coding MGP_CASTEiJ_T0031708.1 MGP_CASTEiJ_G0018379.1 mouse_genomes_project 11 101209114 101219885 - Med24 protein_coding retained_intron MGP_CASTEiJ_T0010962.1 MGP_CASTEiJ_G0009150.1 mouse_genomes_project 11 488059 488295 - Gm27517 misc_RNA misc_RNA MGP_CASTEiJ_T0098738.1 MGP_CASTEiJ_G0035669.1 mouse_genomes_project 11 88441341 88441472 - Gm22387 scaRNA scaRNA MGP_CASTEiJ_T0006064.1 MGP_CASTEiJ_G0005078.1 mouse_genomes_project 11 43666696 43683231 - Gm12159 lincRNA lincRNA MGP_CASTEiJ_T0028384.1 MGP_CASTEiJ_G0017592.1 mouse_genomes_project 11 50726818 50775811 - MGP_CASTEiJ_P0028384 Jade2 protein_coding protein_coding MGP_CASTEiJ_T0028385.1 MGP_CASTEiJ_G0017592.1 mouse_genomes_project 11 50726823 50775554 - MGP_CASTEiJ_P0028385 Jade2 protein_coding protein_coding MGP_CASTEiJ_T0028386.1 MGP_CASTEiJ_G0017592.1 mouse_genomes_project 11 50730119 50774555 - MGP_CASTEiJ_P0028386 Jade2 protein_coding protein_coding MGP_CASTEiJ_T0028387.1 MGP_CASTEiJ_G0017592.1 mouse_genomes_project 11 50759432 50775287 - Jade2 protein_coding processed_transcript MGP_CASTEiJ_T0032606.1 MGP_CASTEiJ_G0018602.1 mouse_genomes_project 11 109315607 109348493 + MGP_CASTEiJ_P0032606 Ddx42 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032607.1 MGP_CASTEiJ_G0018602.1 mouse_genomes_project 11 109315619 109348493 + MGP_CASTEiJ_P0032607 Ddx42 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032608.1 MGP_CASTEiJ_G0018602.1 mouse_genomes_project 11 109336795 109338258 + Ddx42 protein_coding processed_transcript MGP_CASTEiJ_T0006102.1 MGP_CASTEiJ_G0005109.1 mouse_genomes_project 11 70856635 70858347 - Gm12319 lincRNA lincRNA MGP_CASTEiJ_T0027411.1 MGP_CASTEiJ_G0017355.1 mouse_genomes_project 11 6180848 6202749 + MGP_CASTEiJ_P0027411 Gm11992 protein_coding protein_coding MGP_CASTEiJ_T0027878.1 MGP_CASTEiJ_G0017455.1 mouse_genomes_project 11 30497262 30514676 - MGP_CASTEiJ_P0027878 Efcab9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027879.1 MGP_CASTEiJ_G0017455.1 mouse_genomes_project 11 30503292 30509281 - MGP_CASTEiJ_P0027879 Efcab9 protein_coding protein_coding MGP_CASTEiJ_T0027880.1 MGP_CASTEiJ_G0017455.1 mouse_genomes_project 11 30503881 30513973 - MGP_CASTEiJ_P0027880 Efcab9 protein_coding protein_coding MGP_CASTEiJ_T0029722.1 MGP_CASTEiJ_G0017909.1 mouse_genomes_project 11 70704495 70705556 + Psmb6 protein_coding retained_intron MGP_CASTEiJ_T0029723.1 MGP_CASTEiJ_G0017909.1 mouse_genomes_project 11 70704514 70706783 + MGP_CASTEiJ_P0029723 Psmb6 protein_coding protein_coding MGP_CASTEiJ_T0029724.1 MGP_CASTEiJ_G0017909.1 mouse_genomes_project 11 70705241 70706329 + Psmb6 protein_coding retained_intron MGP_CASTEiJ_T0029725.1 MGP_CASTEiJ_G0017909.1 mouse_genomes_project 11 70706201 70706992 + Psmb6 protein_coding retained_intron MGP_CASTEiJ_T0031274.1 MGP_CASTEiJ_G0018274.1 mouse_genomes_project 11 96572678 96584979 - MGP_CASTEiJ_P0031274 Eme1 protein_coding protein_coding MGP_CASTEiJ_T0031275.1 MGP_CASTEiJ_G0018274.1 mouse_genomes_project 11 96575403 96578237 - Eme1 protein_coding processed_transcript MGP_CASTEiJ_T0031276.1 MGP_CASTEiJ_G0018274.1 mouse_genomes_project 11 96577600 96578412 - Eme1 protein_coding processed_transcript MGP_CASTEiJ_T0031277.1 MGP_CASTEiJ_G0018274.1 mouse_genomes_project 11 96578281 96584686 - Eme1 protein_coding processed_transcript MGP_CASTEiJ_T0009459.1 MGP_CASTEiJ_G0007647.1 mouse_genomes_project 11 70977325 70977415 - Gm22760 miRNA miRNA MGP_CASTEiJ_T0003214.1 MGP_CASTEiJ_G0002976.1 mouse_genomes_project 11 110589370 110591382 + Gm11712 antisense antisense MGP_CASTEiJ_T0030323.1 MGP_CASTEiJ_G0018054.1 mouse_genomes_project 11 78120223 78139974 - MGP_CASTEiJ_P0030323 Ankrd13b protein_coding unknown_likely_coding MGP_CASTEiJ_T0030324.1 MGP_CASTEiJ_G0018054.1 mouse_genomes_project 11 78120223 78139974 - MGP_CASTEiJ_P0030324 Ankrd13b protein_coding unknown_likely_coding MGP_CASTEiJ_T0030325.1 MGP_CASTEiJ_G0018054.1 mouse_genomes_project 11 78120228 78126794 - MGP_CASTEiJ_P0030325 Ankrd13b protein_coding protein_coding MGP_CASTEiJ_T0030326.1 MGP_CASTEiJ_G0018054.1 mouse_genomes_project 11 78120228 78140047 - MGP_CASTEiJ_P0030326 Ankrd13b protein_coding protein_coding MGP_CASTEiJ_T0030327.1 MGP_CASTEiJ_G0018054.1 mouse_genomes_project 11 78120230 78123367 - Ankrd13b protein_coding retained_intron MGP_CASTEiJ_T0030328.1 MGP_CASTEiJ_G0018054.1 mouse_genomes_project 11 78120230 78140059 - MGP_CASTEiJ_P0030328 Ankrd13b protein_coding protein_coding MGP_CASTEiJ_T0030329.1 MGP_CASTEiJ_G0018054.1 mouse_genomes_project 11 78121856 78127123 - Ankrd13b protein_coding retained_intron MGP_CASTEiJ_T0030330.1 MGP_CASTEiJ_G0018054.1 mouse_genomes_project 11 78122513 78126605 - MGP_CASTEiJ_P0030330 Ankrd13b protein_coding protein_coding MGP_CASTEiJ_T0028376.1 MGP_CASTEiJ_G0017590.1 mouse_genomes_project 11 50590269 50661602 - MGP_CASTEiJ_P0028376 Sec24a protein_coding protein_coding MGP_CASTEiJ_T0028377.1 MGP_CASTEiJ_G0017590.1 mouse_genomes_project 11 50592630 50661194 - MGP_CASTEiJ_P0028377 Sec24a protein_coding protein_coding MGP_CASTEiJ_T0028378.1 MGP_CASTEiJ_G0017590.1 mouse_genomes_project 11 50621045 50661415 - MGP_CASTEiJ_P0028378 Sec24a protein_coding protein_coding MGP_CASTEiJ_T0028379.1 MGP_CASTEiJ_G0017590.1 mouse_genomes_project 11 50621045 50661422 - MGP_CASTEiJ_P0028379 Sec24a protein_coding protein_coding MGP_CASTEiJ_T0028380.1 MGP_CASTEiJ_G0017590.1 mouse_genomes_project 11 50631657 50662145 - Sec24a protein_coding retained_intron MGP_CASTEiJ_T0028381.1 MGP_CASTEiJ_G0017590.1 mouse_genomes_project 11 50643910 50672252 - Sec24a protein_coding retained_intron MGP_CASTEiJ_T0030255.1 MGP_CASTEiJ_G0018040.1 mouse_genomes_project 11 76861360 77006834 - MGP_CASTEiJ_P0030255 Nxn protein_coding protein_coding MGP_CASTEiJ_T0030256.1 MGP_CASTEiJ_G0018040.1 mouse_genomes_project 11 76964263 77006762 - Nxn protein_coding processed_transcript MGP_CASTEiJ_T0032715.1 MGP_CASTEiJ_G0018623.1 mouse_genomes_project 11 110395975 110686158 - MGP_CASTEiJ_P0032715 Pitpnc1 protein_coding protein_coding MGP_CASTEiJ_T0032716.1 MGP_CASTEiJ_G0018623.1 mouse_genomes_project 11 110395975 110530067 - MGP_CASTEiJ_P0032716 Pitpnc1 protein_coding protein_coding MGP_CASTEiJ_T0032717.1 MGP_CASTEiJ_G0018623.1 mouse_genomes_project 11 110414376 110541228 - MGP_CASTEiJ_P0032717 Pitpnc1 protein_coding protein_coding MGP_CASTEiJ_T0032718.1 MGP_CASTEiJ_G0018623.1 mouse_genomes_project 11 110511955 110529956 - Pitpnc1 protein_coding processed_transcript MGP_CASTEiJ_T0012284.1 MGP_CASTEiJ_G0010447.1 mouse_genomes_project 11 62425410 62425708 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100434.1 MGP_CASTEiJ_G0037347.1 mouse_genomes_project 11 47518947 47519014 + Gm25296 snoRNA snoRNA MGP_CASTEiJ_T0009502.1 MGP_CASTEiJ_G0007690.1 mouse_genomes_project 11 104087890 104087986 - Gm25593 miRNA miRNA MGP_CASTEiJ_T0030539.1 MGP_CASTEiJ_G0018099.1 mouse_genomes_project 11 79618900 79641298 + MGP_CASTEiJ_P0030539 Lyrm9 protein_coding protein_coding MGP_CASTEiJ_T0030540.1 MGP_CASTEiJ_G0018099.1 mouse_genomes_project 11 79618920 79630614 + MGP_CASTEiJ_P0030540 Lyrm9 protein_coding protein_coding MGP_CASTEiJ_T0030541.1 MGP_CASTEiJ_G0018099.1 mouse_genomes_project 11 79618945 79631630 + Lyrm9 protein_coding processed_transcript MGP_CASTEiJ_T0003169.1 MGP_CASTEiJ_G0002938.1 mouse_genomes_project 11 99138316 99141642 - Gm11525 antisense antisense MGP_CASTEiJ_T0016489.1 MGP_CASTEiJ_G0014503.1 mouse_genomes_project 11 84460913 84463829 + AA465934 processed_transcript antisense MGP_CASTEiJ_T0016490.1 MGP_CASTEiJ_G0014503.1 mouse_genomes_project 11 84460934 84463830 + AA465934 processed_transcript antisense MGP_CASTEiJ_T0016491.1 MGP_CASTEiJ_G0014503.1 mouse_genomes_project 11 84460942 84461501 + AA465934 processed_transcript retained_intron MGP_CASTEiJ_T0016492.1 MGP_CASTEiJ_G0014503.1 mouse_genomes_project 11 84460956 84463827 + AA465934 processed_transcript antisense MGP_CASTEiJ_T0016493.1 MGP_CASTEiJ_G0014503.1 mouse_genomes_project 11 84460957 84463828 + AA465934 processed_transcript retained_intron MGP_CASTEiJ_T0031368.1 MGP_CASTEiJ_G0018299.1 mouse_genomes_project 11 97952396 97962843 - Abi3 protein_coding processed_transcript MGP_CASTEiJ_T0031369.1 MGP_CASTEiJ_G0018299.1 mouse_genomes_project 11 97952865 97962797 - MGP_CASTEiJ_P0031369 Abi3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031370.1 MGP_CASTEiJ_G0018299.1 mouse_genomes_project 11 97952865 97962797 - MGP_CASTEiJ_P0031370 Abi3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031371.1 MGP_CASTEiJ_G0018299.1 mouse_genomes_project 11 97953107 97956265 - MGP_CASTEiJ_P0031371 Abi3 protein_coding protein_coding MGP_CASTEiJ_T0031372.1 MGP_CASTEiJ_G0018299.1 mouse_genomes_project 11 97957431 97962465 - Abi3 protein_coding processed_transcript MGP_CASTEiJ_T0030115.1 MGP_CASTEiJ_G0018010.1 mouse_genomes_project 11 75439104 75693322 + MGP_CASTEiJ_P0030115 Smg6 protein_coding protein_coding MGP_CASTEiJ_T0030116.1 MGP_CASTEiJ_G0018010.1 mouse_genomes_project 11 75443812 75693322 + MGP_CASTEiJ_P0030116 Smg6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030117.1 MGP_CASTEiJ_G0018010.1 mouse_genomes_project 11 75505875 75508740 + Smg6 protein_coding retained_intron MGP_CASTEiJ_T0030118.1 MGP_CASTEiJ_G0018010.1 mouse_genomes_project 11 75510386 75664790 + MGP_CASTEiJ_P0030118 Smg6 protein_coding protein_coding MGP_CASTEiJ_T0030119.1 MGP_CASTEiJ_G0018010.1 mouse_genomes_project 11 75657867 75664790 + Smg6 protein_coding processed_transcript MGP_CASTEiJ_T0030120.1 MGP_CASTEiJ_G0018010.1 mouse_genomes_project 11 75688503 75692053 + Smg6 protein_coding processed_transcript MGP_CASTEiJ_T0003191.1 MGP_CASTEiJ_G0002955.1 mouse_genomes_project 11 104666917 104671919 + Gm11551 antisense antisense MGP_CASTEiJ_T0033418.1 MGP_CASTEiJ_G0018760.1 mouse_genomes_project 11 121993897 121999658 + MGP_CASTEiJ_P0033418 Tmem235 protein_coding protein_coding MGP_CASTEiJ_T0006035.1 MGP_CASTEiJ_G0005054.1 mouse_genomes_project 11 22857553 23016762 + 4933427E13Rik lincRNA lincRNA MGP_CASTEiJ_T0006037.1 MGP_CASTEiJ_G0005054.1 mouse_genomes_project 11 22972936 23016766 + 4933427E13Rik lincRNA lincRNA MGP_CASTEiJ_T0006038.1 MGP_CASTEiJ_G0005054.1 mouse_genomes_project 11 22972965 22977601 + 4933427E13Rik lincRNA lincRNA MGP_CASTEiJ_T0006039.1 MGP_CASTEiJ_G0005054.1 mouse_genomes_project 11 22976840 23007828 + 4933427E13Rik lincRNA lincRNA MGP_CASTEiJ_T0009492.1 MGP_CASTEiJ_G0007680.1 mouse_genomes_project 11 99946273 99946344 - Gm24158 miRNA miRNA MGP_CASTEiJ_T0003155.1 MGP_CASTEiJ_G0002927.1 mouse_genomes_project 11 97217557 97231526 + Dlx4os antisense antisense MGP_CASTEiJ_T0016425.1 MGP_CASTEiJ_G0014466.1 mouse_genomes_project 11 3756809 3760892 - Gm11981 processed_transcript processed_transcript MGP_CASTEiJ_T0027091.1 MGP_CASTEiJ_G0017284.1 mouse_genomes_project 11 801149 826947 - MGP_CASTEiJ_P0027091 4930556J24Rik protein_coding protein_coding MGP_CASTEiJ_T0032970.1 MGP_CASTEiJ_G0018680.1 mouse_genomes_project 11 119115440 119131712 - MGP_CASTEiJ_P0032970 Grin2c protein_coding protein_coding MGP_CASTEiJ_T0032971.1 MGP_CASTEiJ_G0018680.1 mouse_genomes_project 11 119115440 119133534 - MGP_CASTEiJ_P0032971 Grin2c protein_coding protein_coding MGP_CASTEiJ_T0028294.1 MGP_CASTEiJ_G0017568.1 mouse_genomes_project 11 49678602 49698227 - MGP_CASTEiJ_P0028294 Zfp454 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028295.1 MGP_CASTEiJ_G0017568.1 mouse_genomes_project 11 49678602 49698227 - MGP_CASTEiJ_P0028295 Zfp454 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028296.1 MGP_CASTEiJ_G0017568.1 mouse_genomes_project 11 49683579 49698172 - MGP_CASTEiJ_P0028296 Zfp454 protein_coding protein_coding MGP_CASTEiJ_T0028297.1 MGP_CASTEiJ_G0017568.1 mouse_genomes_project 11 49683579 49698230 - MGP_CASTEiJ_P0028297 Zfp454 protein_coding protein_coding MGP_CASTEiJ_T0028298.1 MGP_CASTEiJ_G0017568.1 mouse_genomes_project 11 49683579 49698380 - MGP_CASTEiJ_P0028298 Zfp454 protein_coding protein_coding MGP_CASTEiJ_T0028299.1 MGP_CASTEiJ_G0017568.1 mouse_genomes_project 11 49685020 49698380 - Zfp454 protein_coding processed_transcript MGP_CASTEiJ_T0028300.1 MGP_CASTEiJ_G0017568.1 mouse_genomes_project 11 49688549 49698380 - MGP_CASTEiJ_P0028300 Zfp454 protein_coding protein_coding MGP_CASTEiJ_T0028301.1 MGP_CASTEiJ_G0017568.1 mouse_genomes_project 11 49688761 49698259 - Zfp454 protein_coding processed_transcript MGP_CASTEiJ_T0027145.1 MGP_CASTEiJ_G0017298.1 mouse_genomes_project 11 1214702 1315776 - MGP_CASTEiJ_P0027145 Hormad2 protein_coding protein_coding MGP_CASTEiJ_T0027146.1 MGP_CASTEiJ_G0017298.1 mouse_genomes_project 11 1214702 1316134 - MGP_CASTEiJ_P0027146 Hormad2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027147.1 MGP_CASTEiJ_G0017298.1 mouse_genomes_project 11 1215270 1316113 - MGP_CASTEiJ_P0027147 Hormad2 protein_coding protein_coding MGP_CASTEiJ_T0027148.1 MGP_CASTEiJ_G0017298.1 mouse_genomes_project 11 1298842 1302044 - Hormad2 protein_coding processed_transcript MGP_CASTEiJ_T0027149.1 MGP_CASTEiJ_G0017298.1 mouse_genomes_project 11 1299022 1316136 - MGP_CASTEiJ_P0027149 Hormad2 protein_coding protein_coding MGP_CASTEiJ_T0027150.1 MGP_CASTEiJ_G0017298.1 mouse_genomes_project 11 1302095 1310791 - Hormad2 protein_coding processed_transcript MGP_CASTEiJ_T0030673.1 MGP_CASTEiJ_G0018133.1 mouse_genomes_project 11 83149998 83151555 + MGP_CASTEiJ_P0030673 Ccl12 protein_coding protein_coding MGP_CASTEiJ_T0030674.1 MGP_CASTEiJ_G0018133.1 mouse_genomes_project 11 83150005 83151522 + Ccl12 protein_coding processed_transcript MGP_CASTEiJ_T0006119.1 MGP_CASTEiJ_G0005123.1 mouse_genomes_project 11 78627026 78643903 - Gm11190 lincRNA lincRNA MGP_CASTEiJ_T0029638.1 MGP_CASTEiJ_G0017889.1 mouse_genomes_project 11 70237857 70251315 + MGP_CASTEiJ_P0029638 Asgr2 protein_coding protein_coding MGP_CASTEiJ_T0029639.1 MGP_CASTEiJ_G0017889.1 mouse_genomes_project 11 70238034 70250844 + MGP_CASTEiJ_P0029639 Asgr2 protein_coding protein_coding MGP_CASTEiJ_T0029640.1 MGP_CASTEiJ_G0017889.1 mouse_genomes_project 11 70243005 70251290 + Asgr2 protein_coding retained_intron MGP_CASTEiJ_T0012238.1 MGP_CASTEiJ_G0010401.1 mouse_genomes_project 11 48110790 48111702 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031084.1 MGP_CASTEiJ_G0018234.1 mouse_genomes_project 11 89900226 90312266 - MGP_CASTEiJ_P0031084 Msi2 protein_coding protein_coding MGP_CASTEiJ_T0031085.1 MGP_CASTEiJ_G0018234.1 mouse_genomes_project 11 89904734 90312212 - MGP_CASTEiJ_P0031085 Msi2 protein_coding protein_coding MGP_CASTEiJ_T0031086.1 MGP_CASTEiJ_G0018234.1 mouse_genomes_project 11 89928006 90172457 - Msi2 protein_coding retained_intron MGP_CASTEiJ_T0031087.1 MGP_CASTEiJ_G0018234.1 mouse_genomes_project 11 90048776 90312221 - Msi2 protein_coding retained_intron MGP_CASTEiJ_T0031088.1 MGP_CASTEiJ_G0018234.1 mouse_genomes_project 11 90172364 90313916 - MGP_CASTEiJ_P0031088 Msi2 protein_coding protein_coding MGP_CASTEiJ_T0031089.1 MGP_CASTEiJ_G0018234.1 mouse_genomes_project 11 90275908 90312266 - MGP_CASTEiJ_P0031089 Msi2 protein_coding protein_coding MGP_CASTEiJ_T0031090.1 MGP_CASTEiJ_G0018234.1 mouse_genomes_project 11 90305601 90312266 - Msi2 protein_coding processed_transcript MGP_CASTEiJ_T0009527.1 MGP_CASTEiJ_G0007715.1 mouse_genomes_project 11 124574194 124574332 + miRNA miRNA MGP_CASTEiJ_T0032673.1 MGP_CASTEiJ_G0018617.1 mouse_genomes_project 11 109938908 109946232 - MGP_CASTEiJ_P0032673 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032674.1 MGP_CASTEiJ_G0018617.1 mouse_genomes_project 11 109939046 109941405 - protein_coding processed_transcript MGP_CASTEiJ_T0032675.1 MGP_CASTEiJ_G0018617.1 mouse_genomes_project 11 109941057 109946211 - protein_coding processed_transcript MGP_CASTEiJ_T0032676.1 MGP_CASTEiJ_G0018617.1 mouse_genomes_project 11 109941486 109942802 - protein_coding retained_intron MGP_CASTEiJ_T0032677.1 MGP_CASTEiJ_G0018617.1 mouse_genomes_project 11 109941709 109946234 - MGP_CASTEiJ_P0032677 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032678.1 MGP_CASTEiJ_G0018617.1 mouse_genomes_project 11 109942898 109943804 - protein_coding processed_transcript MGP_CASTEiJ_T0032679.1 MGP_CASTEiJ_G0018617.1 mouse_genomes_project 11 109943251 109946931 - MGP_CASTEiJ_P0032679 protein_coding protein_coding MGP_CASTEiJ_T0032680.1 MGP_CASTEiJ_G0018617.1 mouse_genomes_project 11 109943824 109946627 - MGP_CASTEiJ_P0032680 protein_coding protein_coding MGP_CASTEiJ_T0000808.1 MGP_CASTEiJ_G0000748.1 mouse_genomes_project 11 43137363 43144411 - TEC TEC MGP_CASTEiJ_T0009519.1 MGP_CASTEiJ_G0007707.1 mouse_genomes_project 11 121158920 121158997 + Gm24323 miRNA miRNA MGP_CASTEiJ_T0099276.1 MGP_CASTEiJ_G0036189.1 mouse_genomes_project 11 104137553 104137734 - Gm25475 snRNA snRNA MGP_CASTEiJ_T0032506.1 MGP_CASTEiJ_G0018580.1 mouse_genomes_project 11 107343618 107461485 - MGP_CASTEiJ_P0032506 Kansl1 protein_coding protein_coding MGP_CASTEiJ_T0032507.1 MGP_CASTEiJ_G0018580.1 mouse_genomes_project 11 107343886 107491726 - MGP_CASTEiJ_P0032507 Kansl1 protein_coding protein_coding MGP_CASTEiJ_T0032508.1 MGP_CASTEiJ_G0018580.1 mouse_genomes_project 11 107343886 107461485 - MGP_CASTEiJ_P0032508 Kansl1 protein_coding protein_coding MGP_CASTEiJ_T0032509.1 MGP_CASTEiJ_G0018580.1 mouse_genomes_project 11 107343930 107460892 - MGP_CASTEiJ_P0032509 Kansl1 protein_coding protein_coding MGP_CASTEiJ_T0032510.1 MGP_CASTEiJ_G0018580.1 mouse_genomes_project 11 107345305 107351432 - Kansl1 protein_coding processed_transcript MGP_CASTEiJ_T0032511.1 MGP_CASTEiJ_G0018580.1 mouse_genomes_project 11 107443272 107490856 - MGP_CASTEiJ_P0032511 Kansl1 protein_coding protein_coding MGP_CASTEiJ_T0027593.1 MGP_CASTEiJ_G0017393.1 mouse_genomes_project 11 20047885 20055514 + MGP_CASTEiJ_P0027593 Tmem17 protein_coding protein_coding MGP_CASTEiJ_T0098822.1 MGP_CASTEiJ_G0035751.1 mouse_genomes_project 11 110702100 110703311 + Gm11722 sense_intronic sense_intronic MGP_CASTEiJ_T0006011.1 MGP_CASTEiJ_G0005032.1 mouse_genomes_project 11 15419644 15427033 + Gm12018 lincRNA lincRNA MGP_CASTEiJ_T0100421.1 MGP_CASTEiJ_G0037334.1 mouse_genomes_project 11 18279060 18279189 - Gm22807 snoRNA snoRNA MGP_CASTEiJ_T0027500.1 MGP_CASTEiJ_G0017374.1 mouse_genomes_project 11 14527931 14536255 - MGP_CASTEiJ_P0027500 Pno1 protein_coding protein_coding MGP_CASTEiJ_T0027501.1 MGP_CASTEiJ_G0017374.1 mouse_genomes_project 11 14533500 14535747 - Pno1 protein_coding processed_transcript MGP_CASTEiJ_T0016461.1 MGP_CASTEiJ_G0014487.1 mouse_genomes_project 11 58660492 58662840 - 2610507I01Rik processed_transcript processed_transcript MGP_CASTEiJ_T0031572.1 MGP_CASTEiJ_G0018349.1 mouse_genomes_project 11 100072343 100076620 - MGP_CASTEiJ_P0031572 1700001P01Rik protein_coding protein_coding MGP_CASTEiJ_T0033005.1 MGP_CASTEiJ_G0018689.1 mouse_genomes_project 11 119292454 119295236 - MGP_CASTEiJ_P0033005 Gm10250 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033006.1 MGP_CASTEiJ_G0018689.1 mouse_genomes_project 11 119292454 119298539 - MGP_CASTEiJ_P0033006 Gm10250 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033007.1 MGP_CASTEiJ_G0018689.1 mouse_genomes_project 11 119292455 119294798 - Gm10250 protein_coding processed_transcript MGP_CASTEiJ_T0033008.1 MGP_CASTEiJ_G0018689.1 mouse_genomes_project 11 119292455 119293789 - Gm10250 protein_coding processed_transcript MGP_CASTEiJ_T0033009.1 MGP_CASTEiJ_G0018689.1 mouse_genomes_project 11 119292584 119296830 - MGP_CASTEiJ_P0033009 Gm10250 protein_coding protein_coding MGP_CASTEiJ_T0033010.1 MGP_CASTEiJ_G0018689.1 mouse_genomes_project 11 119293625 119297165 - Gm10250 protein_coding processed_transcript MGP_CASTEiJ_T0031344.1 MGP_CASTEiJ_G0018291.1 mouse_genomes_project 11 97470113 97473201 + MGP_CASTEiJ_P0031344 Slc35b1 protein_coding protein_coding MGP_CASTEiJ_T0031345.1 MGP_CASTEiJ_G0018291.1 mouse_genomes_project 11 97470247 97477125 + MGP_CASTEiJ_P0031345 Slc35b1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031346.1 MGP_CASTEiJ_G0018291.1 mouse_genomes_project 11 97470258 97477126 + MGP_CASTEiJ_P0031346 Slc35b1 protein_coding protein_coding MGP_CASTEiJ_T0031347.1 MGP_CASTEiJ_G0018291.1 mouse_genomes_project 11 97470262 97471622 + Slc35b1 protein_coding retained_intron MGP_CASTEiJ_T0031348.1 MGP_CASTEiJ_G0018291.1 mouse_genomes_project 11 97475290 97476001 + Slc35b1 protein_coding retained_intron MGP_CASTEiJ_T0031069.1 MGP_CASTEiJ_G0018230.1 mouse_genomes_project 11 89605658 89622160 + MGP_CASTEiJ_P0031069 Vezf1 protein_coding protein_coding MGP_CASTEiJ_T0031070.1 MGP_CASTEiJ_G0018230.1 mouse_genomes_project 11 89611008 89622160 + MGP_CASTEiJ_P0031070 Vezf1 protein_coding protein_coding MGP_CASTEiJ_T0012360.1 MGP_CASTEiJ_G0010523.1 mouse_genomes_project 11 95546234 95546704 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032863.1 MGP_CASTEiJ_G0018655.1 mouse_genomes_project 11 117347211 117361442 + MGP_CASTEiJ_P0032863 Cog1 protein_coding protein_coding MGP_CASTEiJ_T0032864.1 MGP_CASTEiJ_G0018655.1 mouse_genomes_project 11 117353342 117354905 + Cog1 protein_coding retained_intron MGP_CASTEiJ_T0032865.1 MGP_CASTEiJ_G0018655.1 mouse_genomes_project 11 117356031 117364642 + MGP_CASTEiJ_P0032865 Cog1 protein_coding protein_coding MGP_CASTEiJ_T0032866.1 MGP_CASTEiJ_G0018655.1 mouse_genomes_project 11 117356168 117360122 + MGP_CASTEiJ_P0032866 Cog1 protein_coding protein_coding MGP_CASTEiJ_T0032867.1 MGP_CASTEiJ_G0018655.1 mouse_genomes_project 11 117356186 117360158 + MGP_CASTEiJ_P0032867 Cog1 protein_coding protein_coding MGP_CASTEiJ_T0032868.1 MGP_CASTEiJ_G0018655.1 mouse_genomes_project 11 117357465 117360893 + MGP_CASTEiJ_P0032868 Cog1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032869.1 MGP_CASTEiJ_G0018655.1 mouse_genomes_project 11 117358168 117360893 + MGP_CASTEiJ_P0032869 Cog1 protein_coding protein_coding MGP_CASTEiJ_T0009413.1 MGP_CASTEiJ_G0007601.1 mouse_genomes_project 11 22306464 22306608 - Gm25507 miRNA miRNA MGP_CASTEiJ_T0031709.1 MGP_CASTEiJ_G0018380.1 mouse_genomes_project 11 101232235 101246734 + Thra protein_coding processed_transcript MGP_CASTEiJ_T0031710.1 MGP_CASTEiJ_G0018380.1 mouse_genomes_project 11 101232398 101246994 + Thra protein_coding processed_transcript MGP_CASTEiJ_T0031711.1 MGP_CASTEiJ_G0018380.1 mouse_genomes_project 11 101232581 101246798 + Thra protein_coding processed_transcript MGP_CASTEiJ_T0031712.1 MGP_CASTEiJ_G0018380.1 mouse_genomes_project 11 101233490 101253097 + Thra protein_coding processed_transcript MGP_CASTEiJ_T0031713.1 MGP_CASTEiJ_G0018380.1 mouse_genomes_project 11 101233490 101265988 + MGP_CASTEiJ_P0031713 Thra protein_coding protein_coding MGP_CASTEiJ_T0031714.1 MGP_CASTEiJ_G0018380.1 mouse_genomes_project 11 101233552 101262060 + MGP_CASTEiJ_P0031714 Thra protein_coding protein_coding MGP_CASTEiJ_T0031715.1 MGP_CASTEiJ_G0018380.1 mouse_genomes_project 11 101233837 101252393 + MGP_CASTEiJ_P0031715 Thra protein_coding protein_coding MGP_CASTEiJ_T0031716.1 MGP_CASTEiJ_G0018380.1 mouse_genomes_project 11 101235897 101247133 + Thra protein_coding processed_transcript MGP_CASTEiJ_T0031717.1 MGP_CASTEiJ_G0018380.1 mouse_genomes_project 11 101246941 101265385 + MGP_CASTEiJ_P0031717 Thra protein_coding protein_coding MGP_CASTEiJ_T0027596.1 MGP_CASTEiJ_G0017396.1 mouse_genomes_project 11 20398667 20423819 - MGP_CASTEiJ_P0027596 B3gnt2 protein_coding protein_coding MGP_CASTEiJ_T0027597.1 MGP_CASTEiJ_G0017396.1 mouse_genomes_project 11 20398785 20424206 - MGP_CASTEiJ_P0027597 B3gnt2 protein_coding protein_coding MGP_CASTEiJ_T0027598.1 MGP_CASTEiJ_G0017396.1 mouse_genomes_project 11 20400507 20424673 - MGP_CASTEiJ_P0027598 B3gnt2 protein_coding protein_coding MGP_CASTEiJ_T0009503.1 MGP_CASTEiJ_G0007691.1 mouse_genomes_project 11 104160065 104160132 - Mir6929 miRNA miRNA MGP_CASTEiJ_T0012415.1 MGP_CASTEiJ_G0010578.1 mouse_genomes_project 11 118777555 118777958 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029149.1 MGP_CASTEiJ_G0017778.1 mouse_genomes_project 11 63672302 63722237 - MGP_CASTEiJ_P0029149 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029150.1 MGP_CASTEiJ_G0017778.1 mouse_genomes_project 11 63683958 63722587 - MGP_CASTEiJ_P0029150 protein_coding protein_coding MGP_CASTEiJ_T0030664.1 MGP_CASTEiJ_G0018127.1 mouse_genomes_project 11 81831642 83006256 - MGP_CASTEiJ_P0030664 Asic2 protein_coding protein_coding MGP_CASTEiJ_T0030665.1 MGP_CASTEiJ_G0018127.1 mouse_genomes_project 11 81831642 82134540 - MGP_CASTEiJ_P0030665 Asic2 protein_coding protein_coding MGP_CASTEiJ_T0033140.1 MGP_CASTEiJ_G0018709.1 mouse_genomes_project 11 119843918 119850230 + MGP_CASTEiJ_P0033140 Smim5 protein_coding protein_coding MGP_CASTEiJ_T0033141.1 MGP_CASTEiJ_G0018709.1 mouse_genomes_project 11 119844130 119849858 + MGP_CASTEiJ_P0033141 Smim5 protein_coding protein_coding MGP_CASTEiJ_T0033142.1 MGP_CASTEiJ_G0018709.1 mouse_genomes_project 11 119844154 119849675 + MGP_CASTEiJ_P0033142 Smim5 protein_coding protein_coding MGP_CASTEiJ_T0028388.1 MGP_CASTEiJ_G0017593.1 mouse_genomes_project 11 50795374 50808797 + MGP_CASTEiJ_P0028388 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0031806.1 MGP_CASTEiJ_G0018419.1 mouse_genomes_project 11 102217899 102219913 - MGP_CASTEiJ_P0031806 Krtap4-7 protein_coding protein_coding MGP_CASTEiJ_T0098819.1 MGP_CASTEiJ_G0035749.1 mouse_genomes_project 11 89189399 89193280 + 1110028F11Rik sense_intronic sense_intronic MGP_CASTEiJ_T0098820.1 MGP_CASTEiJ_G0035749.1 mouse_genomes_project 11 89190126 89192939 + 1110028F11Rik sense_intronic sense_intronic MGP_CASTEiJ_T0027901.1 MGP_CASTEiJ_G0017461.1 mouse_genomes_project 11 31250259 31253124 - MGP_CASTEiJ_P0027901 Tlx3 protein_coding protein_coding MGP_CASTEiJ_T0031652.1 MGP_CASTEiJ_G0018365.1 mouse_genomes_project 11 100733940 100735083 + MGP_CASTEiJ_P0031652 Tcap protein_coding protein_coding MGP_CASTEiJ_T0030456.1 MGP_CASTEiJ_G0018078.1 mouse_genomes_project 11 78993933 79003568 + MGP_CASTEiJ_P0030456 Sdf2 protein_coding protein_coding MGP_CASTEiJ_T0030457.1 MGP_CASTEiJ_G0018078.1 mouse_genomes_project 11 78994158 79005970 + MGP_CASTEiJ_P0030457 Sdf2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030458.1 MGP_CASTEiJ_G0018078.1 mouse_genomes_project 11 78998623 79003568 + Sdf2 protein_coding processed_transcript MGP_CASTEiJ_T0030459.1 MGP_CASTEiJ_G0018078.1 mouse_genomes_project 11 78999084 79003193 + Sdf2 protein_coding retained_intron MGP_CASTEiJ_T0031619.1 MGP_CASTEiJ_G0018359.1 mouse_genomes_project 11 100404395 100481953 - MGP_CASTEiJ_P0031619 Fbxl20 protein_coding protein_coding MGP_CASTEiJ_T0031620.1 MGP_CASTEiJ_G0018359.1 mouse_genomes_project 11 100414726 100481816 - MGP_CASTEiJ_P0031620 Fbxl20 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031621.1 MGP_CASTEiJ_G0018359.1 mouse_genomes_project 11 100417147 100481947 - Fbxl20 protein_coding retained_intron MGP_CASTEiJ_T0031622.1 MGP_CASTEiJ_G0018359.1 mouse_genomes_project 11 100423867 100428533 - MGP_CASTEiJ_P0031622 Fbxl20 protein_coding protein_coding MGP_CASTEiJ_T0031623.1 MGP_CASTEiJ_G0018359.1 mouse_genomes_project 11 100426918 100483830 - MGP_CASTEiJ_P0031623 Fbxl20 protein_coding protein_coding MGP_CASTEiJ_T0031624.1 MGP_CASTEiJ_G0018359.1 mouse_genomes_project 11 100430204 100457534 - Fbxl20 protein_coding processed_transcript MGP_CASTEiJ_T0031625.1 MGP_CASTEiJ_G0018359.1 mouse_genomes_project 11 100438142 100457534 - MGP_CASTEiJ_P0031625 Fbxl20 protein_coding protein_coding MGP_CASTEiJ_T0031626.1 MGP_CASTEiJ_G0018359.1 mouse_genomes_project 11 100456557 100457518 - Fbxl20 protein_coding processed_transcript MGP_CASTEiJ_T0033179.1 MGP_CASTEiJ_G0018717.1 mouse_genomes_project 11 120040540 120052409 - MGP_CASTEiJ_P0033179 Wbp2 protein_coding protein_coding MGP_CASTEiJ_T0033180.1 MGP_CASTEiJ_G0018717.1 mouse_genomes_project 11 120041219 120052409 - MGP_CASTEiJ_P0033180 Wbp2 protein_coding protein_coding MGP_CASTEiJ_T0033181.1 MGP_CASTEiJ_G0018717.1 mouse_genomes_project 11 120041364 120043486 - Wbp2 protein_coding processed_transcript MGP_CASTEiJ_T0033182.1 MGP_CASTEiJ_G0018717.1 mouse_genomes_project 11 120043829 120052409 - Wbp2 protein_coding processed_transcript MGP_CASTEiJ_T0033183.1 MGP_CASTEiJ_G0018717.1 mouse_genomes_project 11 120044910 120052386 - Wbp2 protein_coding processed_transcript MGP_CASTEiJ_T0006060.1 MGP_CASTEiJ_G0005074.1 mouse_genomes_project 11 41809557 41811324 + Gm12148 lincRNA lincRNA MGP_CASTEiJ_T0029733.1 MGP_CASTEiJ_G0017911.1 mouse_genomes_project 11 70745084 70800832 + MGP_CASTEiJ_P0029733 Mink1 protein_coding protein_coding MGP_CASTEiJ_T0029734.1 MGP_CASTEiJ_G0017911.1 mouse_genomes_project 11 70745093 70799003 + MGP_CASTEiJ_P0029734 Mink1 protein_coding protein_coding MGP_CASTEiJ_T0029735.1 MGP_CASTEiJ_G0017911.1 mouse_genomes_project 11 70745220 70800833 + MGP_CASTEiJ_P0029735 Mink1 protein_coding protein_coding MGP_CASTEiJ_T0029736.1 MGP_CASTEiJ_G0017911.1 mouse_genomes_project 11 70745273 70798588 + MGP_CASTEiJ_P0029736 Mink1 protein_coding protein_coding MGP_CASTEiJ_T0029737.1 MGP_CASTEiJ_G0017911.1 mouse_genomes_project 11 70745273 70798741 + MGP_CASTEiJ_P0029737 Mink1 protein_coding protein_coding MGP_CASTEiJ_T0029738.1 MGP_CASTEiJ_G0017911.1 mouse_genomes_project 11 70783774 70789870 + Mink1 protein_coding processed_transcript MGP_CASTEiJ_T0029739.1 MGP_CASTEiJ_G0017911.1 mouse_genomes_project 11 70786795 70800833 + MGP_CASTEiJ_P0029739 Mink1 protein_coding protein_coding MGP_CASTEiJ_T0029740.1 MGP_CASTEiJ_G0017911.1 mouse_genomes_project 11 70789038 70792252 + MGP_CASTEiJ_P0029740 Mink1 protein_coding protein_coding MGP_CASTEiJ_T0029741.1 MGP_CASTEiJ_G0017911.1 mouse_genomes_project 11 70789061 70791907 + MGP_CASTEiJ_P0029741 Mink1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029742.1 MGP_CASTEiJ_G0017911.1 mouse_genomes_project 11 70791528 70792601 + Mink1 protein_coding retained_intron MGP_CASTEiJ_T0029743.1 MGP_CASTEiJ_G0017911.1 mouse_genomes_project 11 70792639 70793657 + Mink1 protein_coding retained_intron MGP_CASTEiJ_T0029744.1 MGP_CASTEiJ_G0017911.1 mouse_genomes_project 11 70794567 70795577 + Mink1 protein_coding retained_intron MGP_CASTEiJ_T0029745.1 MGP_CASTEiJ_G0017911.1 mouse_genomes_project 11 70794918 70795840 + Mink1 protein_coding retained_intron MGP_CASTEiJ_T0006013.1 MGP_CASTEiJ_G0005034.1 mouse_genomes_project 11 15915227 16020833 - Gm12023 lincRNA lincRNA MGP_CASTEiJ_T0031127.1 MGP_CASTEiJ_G0018246.1 mouse_genomes_project 11 91720494 91726656 + MGP_CASTEiJ_P0031127 Tmem100 protein_coding protein_coding MGP_CASTEiJ_T0031128.1 MGP_CASTEiJ_G0018246.1 mouse_genomes_project 11 91723506 91740887 + MGP_CASTEiJ_P0031128 Tmem100 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027646.1 MGP_CASTEiJ_G0017404.1 mouse_genomes_project 11 21089704 21093396 - MGP_CASTEiJ_P0027646 1700093K21Rik protein_coding protein_coding MGP_CASTEiJ_T0027647.1 MGP_CASTEiJ_G0017404.1 mouse_genomes_project 11 21089704 21092676 - MGP_CASTEiJ_P0027647 1700093K21Rik protein_coding protein_coding MGP_CASTEiJ_T0027648.1 MGP_CASTEiJ_G0017404.1 mouse_genomes_project 11 21092240 21093396 - MGP_CASTEiJ_P0027648 1700093K21Rik protein_coding protein_coding MGP_CASTEiJ_T0027649.1 MGP_CASTEiJ_G0017404.1 mouse_genomes_project 11 21092269 21094613 - MGP_CASTEiJ_P0027649 1700093K21Rik protein_coding protein_coding MGP_CASTEiJ_T0012263.1 MGP_CASTEiJ_G0010426.1 mouse_genomes_project 11 57179431 57179722 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003118.1 MGP_CASTEiJ_G0002899.1 mouse_genomes_project 11 76433511 76434037 + Gm16075 antisense antisense MGP_CASTEiJ_T0012163.1 MGP_CASTEiJ_G0010326.1 mouse_genomes_project 11 17674087 17674407 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099236.1 MGP_CASTEiJ_G0036149.1 mouse_genomes_project 11 57014993 57015096 + Gm24582 snRNA snRNA MGP_CASTEiJ_T0012394.1 MGP_CASTEiJ_G0010557.1 mouse_genomes_project 11 108082861 108083550 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010974.1 MGP_CASTEiJ_G0009162.1 mouse_genomes_project 11 72699890 72700153 + Gm23224 misc_RNA misc_RNA MGP_CASTEiJ_T0031147.1 MGP_CASTEiJ_G0018250.1 mouse_genomes_project 11 92348806 92356466 + MGP_CASTEiJ_P0031147 Cox11 protein_coding protein_coding MGP_CASTEiJ_T0031148.1 MGP_CASTEiJ_G0018250.1 mouse_genomes_project 11 92350818 92356132 + MGP_CASTEiJ_P0031148 Cox11 protein_coding protein_coding MGP_CASTEiJ_T0031484.1 MGP_CASTEiJ_G0018329.1 mouse_genomes_project 11 99265205 99272042 - MGP_CASTEiJ_P0031484 Lrrc46 protein_coding protein_coding MGP_CASTEiJ_T0029632.1 MGP_CASTEiJ_G0017888.1 mouse_genomes_project 11 70190060 70196596 + MGP_CASTEiJ_P0029632 Asgr1 protein_coding protein_coding MGP_CASTEiJ_T0029633.1 MGP_CASTEiJ_G0017888.1 mouse_genomes_project 11 70190348 70196596 + MGP_CASTEiJ_P0029633 Asgr1 protein_coding protein_coding MGP_CASTEiJ_T0029634.1 MGP_CASTEiJ_G0017888.1 mouse_genomes_project 11 70190348 70196593 + MGP_CASTEiJ_P0029634 Asgr1 protein_coding protein_coding MGP_CASTEiJ_T0029635.1 MGP_CASTEiJ_G0017888.1 mouse_genomes_project 11 70190691 70196596 + MGP_CASTEiJ_P0029635 Asgr1 protein_coding protein_coding MGP_CASTEiJ_T0029636.1 MGP_CASTEiJ_G0017888.1 mouse_genomes_project 11 70190893 70196963 + MGP_CASTEiJ_P0029636 Asgr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029637.1 MGP_CASTEiJ_G0017888.1 mouse_genomes_project 11 70193173 70196073 + MGP_CASTEiJ_P0029637 Asgr1 protein_coding protein_coding MGP_CASTEiJ_T0028787.1 MGP_CASTEiJ_G0017709.1 mouse_genomes_project 11 58949176 58960510 - MGP_CASTEiJ_P0028787 protein_coding protein_coding MGP_CASTEiJ_T0028788.1 MGP_CASTEiJ_G0017709.1 mouse_genomes_project 11 58950658 58960410 - MGP_CASTEiJ_P0028788 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031420.1 MGP_CASTEiJ_G0018317.1 mouse_genomes_project 11 98536702 98539160 + MGP_CASTEiJ_P0031420 Hoxb1 protein_coding protein_coding MGP_CASTEiJ_T0031421.1 MGP_CASTEiJ_G0018317.1 mouse_genomes_project 11 98537208 98538172 + Hoxb1 protein_coding processed_transcript MGP_CASTEiJ_T0027997.1 MGP_CASTEiJ_G0017487.1 mouse_genomes_project 11 41446696 41448207 + MGP_CASTEiJ_P0027997 Gm9972 protein_coding protein_coding MGP_CASTEiJ_T0100447.1 MGP_CASTEiJ_G0037360.1 mouse_genomes_project 11 69123504 69123639 + Snord118 snoRNA snoRNA MGP_CASTEiJ_T0027006.1 MGP_CASTEiJ_G0017270.1 mouse_genomes_project 11 94815 96681 + Patz1 protein_coding processed_transcript MGP_CASTEiJ_T0027007.1 MGP_CASTEiJ_G0017270.1 mouse_genomes_project 11 95108 118383 + Patz1 protein_coding processed_transcript MGP_CASTEiJ_T0027008.1 MGP_CASTEiJ_G0017270.1 mouse_genomes_project 11 95143 101531 + Patz1 protein_coding processed_transcript MGP_CASTEiJ_T0027009.1 MGP_CASTEiJ_G0017270.1 mouse_genomes_project 11 95222 118383 + MGP_CASTEiJ_P0027009 Patz1 protein_coding protein_coding MGP_CASTEiJ_T0027010.1 MGP_CASTEiJ_G0017270.1 mouse_genomes_project 11 96481 101903 + MGP_CASTEiJ_P0027010 Patz1 protein_coding protein_coding MGP_CASTEiJ_T0027011.1 MGP_CASTEiJ_G0017270.1 mouse_genomes_project 11 96481 118383 + MGP_CASTEiJ_P0027011 Patz1 protein_coding protein_coding MGP_CASTEiJ_T0027012.1 MGP_CASTEiJ_G0017270.1 mouse_genomes_project 11 96923 118383 + MGP_CASTEiJ_P0027012 Patz1 protein_coding protein_coding MGP_CASTEiJ_T0027013.1 MGP_CASTEiJ_G0017270.1 mouse_genomes_project 11 96941 118383 + MGP_CASTEiJ_P0027013 Patz1 protein_coding protein_coding MGP_CASTEiJ_T0027014.1 MGP_CASTEiJ_G0017270.1 mouse_genomes_project 11 97015 118153 + MGP_CASTEiJ_P0027014 Patz1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027015.1 MGP_CASTEiJ_G0017270.1 mouse_genomes_project 11 97943 117443 + Patz1 protein_coding processed_transcript MGP_CASTEiJ_T0027016.1 MGP_CASTEiJ_G0017270.1 mouse_genomes_project 11 98679 101142 + Patz1 protein_coding processed_transcript MGP_CASTEiJ_T0027017.1 MGP_CASTEiJ_G0017270.1 mouse_genomes_project 11 99348 101369 + Patz1 protein_coding processed_transcript MGP_CASTEiJ_T0027018.1 MGP_CASTEiJ_G0017270.1 mouse_genomes_project 11 104747 116968 + MGP_CASTEiJ_P0027018 Patz1 protein_coding protein_coding MGP_CASTEiJ_T0098818.1 MGP_CASTEiJ_G0035748.1 mouse_genomes_project 11 81435933 81437631 - C030013C21Rik sense_intronic sense_intronic MGP_CASTEiJ_T0029401.1 MGP_CASTEiJ_G0017837.1 mouse_genomes_project 11 69406269 69432246 - MGP_CASTEiJ_P0029401 Chd3 protein_coding protein_coding MGP_CASTEiJ_T0029402.1 MGP_CASTEiJ_G0017837.1 mouse_genomes_project 11 69406276 69411615 - Chd3 protein_coding retained_intron MGP_CASTEiJ_T0029403.1 MGP_CASTEiJ_G0017837.1 mouse_genomes_project 11 69406276 69409022 - Chd3 protein_coding retained_intron MGP_CASTEiJ_T0029404.1 MGP_CASTEiJ_G0017837.1 mouse_genomes_project 11 69407353 69432231 - MGP_CASTEiJ_P0029404 Chd3 protein_coding protein_coding MGP_CASTEiJ_T0029405.1 MGP_CASTEiJ_G0017837.1 mouse_genomes_project 11 69408138 69427662 - MGP_CASTEiJ_P0029405 Chd3 protein_coding protein_coding MGP_CASTEiJ_T0029406.1 MGP_CASTEiJ_G0017837.1 mouse_genomes_project 11 69409138 69410137 - Chd3 protein_coding retained_intron MGP_CASTEiJ_T0029407.1 MGP_CASTEiJ_G0017837.1 mouse_genomes_project 11 69416877 69417482 - Chd3 protein_coding retained_intron MGP_CASTEiJ_T0029408.1 MGP_CASTEiJ_G0017837.1 mouse_genomes_project 11 69417477 69419454 - MGP_CASTEiJ_P0029408 Chd3 protein_coding protein_coding MGP_CASTEiJ_T0029409.1 MGP_CASTEiJ_G0017837.1 mouse_genomes_project 11 69423584 69424604 - MGP_CASTEiJ_P0029409 Chd3 protein_coding protein_coding MGP_CASTEiJ_T0029410.1 MGP_CASTEiJ_G0017837.1 mouse_genomes_project 11 69423601 69424604 - MGP_CASTEiJ_P0029410 Chd3 protein_coding protein_coding MGP_CASTEiJ_T0006169.1 MGP_CASTEiJ_G0005155.1 mouse_genomes_project 11 100197783 100207604 + Gm11630 lincRNA lincRNA MGP_CASTEiJ_T0009423.1 MGP_CASTEiJ_G0007611.1 mouse_genomes_project 11 44683214 44683335 + Mir8100 miRNA miRNA MGP_CASTEiJ_T0029805.1 MGP_CASTEiJ_G0017923.1 mouse_genomes_project 11 70979399 70992028 + MGP_CASTEiJ_P0029805 Zfp3 protein_coding protein_coding MGP_CASTEiJ_T0032944.1 MGP_CASTEiJ_G0018675.1 mouse_genomes_project 11 118939152 119003895 + Rab37 protein_coding retained_intron MGP_CASTEiJ_T0032945.1 MGP_CASTEiJ_G0018675.1 mouse_genomes_project 11 118939152 119020864 + MGP_CASTEiJ_P0032945 Rab37 protein_coding protein_coding MGP_CASTEiJ_T0032954.1 MGP_CASTEiJ_G0018675.1 mouse_genomes_project 11 119010921 119020864 + MGP_CASTEiJ_P0032954 Rab37 protein_coding protein_coding MGP_CASTEiJ_T0032955.1 MGP_CASTEiJ_G0018675.1 mouse_genomes_project 11 119010967 119016164 + Rab37 protein_coding retained_intron MGP_CASTEiJ_T0027327.1 MGP_CASTEiJ_G0017336.1 mouse_genomes_project 11 3269649 3338132 + MGP_CASTEiJ_P0027327 Ogdh protein_coding unknown_likely_coding MGP_CASTEiJ_T0027328.1 MGP_CASTEiJ_G0017336.1 mouse_genomes_project 11 3269650 3338078 + MGP_CASTEiJ_P0027328 Ogdh protein_coding unknown_likely_coding MGP_CASTEiJ_T0027329.1 MGP_CASTEiJ_G0017336.1 mouse_genomes_project 11 3269663 3339041 + MGP_CASTEiJ_P0027329 Ogdh protein_coding protein_coding MGP_CASTEiJ_T0027330.1 MGP_CASTEiJ_G0017336.1 mouse_genomes_project 11 3269671 3275731 + Ogdh protein_coding retained_intron MGP_CASTEiJ_T0027331.1 MGP_CASTEiJ_G0017336.1 mouse_genomes_project 11 3269696 3338977 + MGP_CASTEiJ_P0027331 Ogdh protein_coding protein_coding MGP_CASTEiJ_T0027332.1 MGP_CASTEiJ_G0017336.1 mouse_genomes_project 11 3269698 3338991 + MGP_CASTEiJ_P0027332 Ogdh protein_coding protein_coding MGP_CASTEiJ_T0027333.1 MGP_CASTEiJ_G0017336.1 mouse_genomes_project 11 3270015 3291516 + MGP_CASTEiJ_P0027333 Ogdh protein_coding protein_coding MGP_CASTEiJ_T0027334.1 MGP_CASTEiJ_G0017336.1 mouse_genomes_project 11 3270202 3291400 + MGP_CASTEiJ_P0027334 Ogdh protein_coding protein_coding MGP_CASTEiJ_T0027335.1 MGP_CASTEiJ_G0017336.1 mouse_genomes_project 11 3270635 3338991 + MGP_CASTEiJ_P0027335 Ogdh protein_coding protein_coding MGP_CASTEiJ_T0027040.1 MGP_CASTEiJ_G0017273.1 mouse_genomes_project 11 232799 272690 - MGP_CASTEiJ_P0027040 Rnf185 protein_coding protein_coding MGP_CASTEiJ_T0027041.1 MGP_CASTEiJ_G0017273.1 mouse_genomes_project 11 232799 272690 - MGP_CASTEiJ_P0027041 Rnf185 protein_coding protein_coding MGP_CASTEiJ_T0027042.1 MGP_CASTEiJ_G0017273.1 mouse_genomes_project 11 234692 272661 - Rnf185 protein_coding processed_transcript MGP_CASTEiJ_T0006129.1 MGP_CASTEiJ_G0005129.1 mouse_genomes_project 11 83705849 83708814 + Gm11426 lincRNA lincRNA MGP_CASTEiJ_T0003185.1 MGP_CASTEiJ_G0002949.1 mouse_genomes_project 11 102920243 102932732 - Gm14206 antisense antisense MGP_CASTEiJ_T0009451.1 MGP_CASTEiJ_G0007639.1 mouse_genomes_project 11 70003283 70003346 - Mir6924 miRNA miRNA MGP_CASTEiJ_T0032258.1 MGP_CASTEiJ_G0018535.1 mouse_genomes_project 11 105105366 105111118 - MGP_CASTEiJ_P0032258 Atxn7l3 protein_coding protein_coding MGP_CASTEiJ_T0032259.1 MGP_CASTEiJ_G0018535.1 mouse_genomes_project 11 105105418 105109563 - Atxn7l3 protein_coding retained_intron MGP_CASTEiJ_T0032260.1 MGP_CASTEiJ_G0018535.1 mouse_genomes_project 11 105105418 105111106 - MGP_CASTEiJ_P0032260 Atxn7l3 protein_coding protein_coding MGP_CASTEiJ_T0032261.1 MGP_CASTEiJ_G0018535.1 mouse_genomes_project 11 105107499 105112176 - MGP_CASTEiJ_P0032261 Atxn7l3 protein_coding protein_coding MGP_CASTEiJ_T0032262.1 MGP_CASTEiJ_G0018535.1 mouse_genomes_project 11 105107499 105112176 - MGP_CASTEiJ_P0032262 Atxn7l3 protein_coding protein_coding MGP_CASTEiJ_T0032469.1 MGP_CASTEiJ_G0018571.1 mouse_genomes_project 11 106597457 106598467 + MGP_CASTEiJ_P0032469 Rprml protein_coding protein_coding MGP_CASTEiJ_T0030499.1 MGP_CASTEiJ_G0018086.1 mouse_genomes_project 11 79166853 79192032 - MGP_CASTEiJ_P0030499 Slc13a2 protein_coding protein_coding MGP_CASTEiJ_T0030500.1 MGP_CASTEiJ_G0018086.1 mouse_genomes_project 11 79168021 79192048 - MGP_CASTEiJ_P0030500 Slc13a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033816.1 MGP_CASTEiJ_G0018833.1 mouse_genomes_project 11 125168589 125187274 - MGP_CASTEiJ_P0033816 Fasn protein_coding protein_coding MGP_CASTEiJ_T0033817.1 MGP_CASTEiJ_G0018833.1 mouse_genomes_project 11 125168862 125186777 - MGP_CASTEiJ_P0033817 Fasn protein_coding unknown_likely_coding MGP_CASTEiJ_T0033818.1 MGP_CASTEiJ_G0018833.1 mouse_genomes_project 11 125169848 125186822 - MGP_CASTEiJ_P0033818 Fasn protein_coding protein_coding MGP_CASTEiJ_T0033819.1 MGP_CASTEiJ_G0018833.1 mouse_genomes_project 11 125170290 125171349 - Fasn protein_coding retained_intron MGP_CASTEiJ_T0033820.1 MGP_CASTEiJ_G0018833.1 mouse_genomes_project 11 125171307 125172445 - Fasn protein_coding retained_intron MGP_CASTEiJ_T0033821.1 MGP_CASTEiJ_G0018833.1 mouse_genomes_project 11 125177223 125178179 - Fasn protein_coding retained_intron MGP_CASTEiJ_T0033822.1 MGP_CASTEiJ_G0018833.1 mouse_genomes_project 11 125185496 125186507 - MGP_CASTEiJ_P0033822 Fasn protein_coding protein_coding MGP_CASTEiJ_T0033270.1 MGP_CASTEiJ_G0018734.1 mouse_genomes_project 11 120549393 120555129 + MGP_CASTEiJ_P0033270 Sphk1 protein_coding protein_coding MGP_CASTEiJ_T0033271.1 MGP_CASTEiJ_G0018734.1 mouse_genomes_project 11 120549589 120554172 + MGP_CASTEiJ_P0033271 Sphk1 protein_coding protein_coding MGP_CASTEiJ_T0033272.1 MGP_CASTEiJ_G0018734.1 mouse_genomes_project 11 120549630 120553756 + Sphk1 protein_coding retained_intron MGP_CASTEiJ_T0033273.1 MGP_CASTEiJ_G0018734.1 mouse_genomes_project 11 120550211 120555129 + MGP_CASTEiJ_P0033273 Sphk1 protein_coding protein_coding MGP_CASTEiJ_T0033274.1 MGP_CASTEiJ_G0018734.1 mouse_genomes_project 11 120550378 120555142 + MGP_CASTEiJ_P0033274 Sphk1 protein_coding protein_coding MGP_CASTEiJ_T0033275.1 MGP_CASTEiJ_G0018734.1 mouse_genomes_project 11 120550911 120555146 + MGP_CASTEiJ_P0033275 Sphk1 protein_coding protein_coding MGP_CASTEiJ_T0033276.1 MGP_CASTEiJ_G0018734.1 mouse_genomes_project 11 120550918 120555140 + Sphk1 protein_coding retained_intron MGP_CASTEiJ_T0033277.1 MGP_CASTEiJ_G0018734.1 mouse_genomes_project 11 120550921 120554184 + MGP_CASTEiJ_P0033277 Sphk1 protein_coding protein_coding MGP_CASTEiJ_T0033278.1 MGP_CASTEiJ_G0018734.1 mouse_genomes_project 11 120550924 120553813 + MGP_CASTEiJ_P0033278 Sphk1 protein_coding protein_coding MGP_CASTEiJ_T0033279.1 MGP_CASTEiJ_G0018734.1 mouse_genomes_project 11 120550940 120555146 + MGP_CASTEiJ_P0033279 Sphk1 protein_coding protein_coding MGP_CASTEiJ_T0033280.1 MGP_CASTEiJ_G0018734.1 mouse_genomes_project 11 120551392 120555129 + MGP_CASTEiJ_P0033280 Sphk1 protein_coding protein_coding MGP_CASTEiJ_T0033281.1 MGP_CASTEiJ_G0018734.1 mouse_genomes_project 11 120551718 120554108 + Sphk1 protein_coding processed_transcript MGP_CASTEiJ_T0033282.1 MGP_CASTEiJ_G0018734.1 mouse_genomes_project 11 120551735 120554467 + MGP_CASTEiJ_P0033282 Sphk1 protein_coding protein_coding MGP_CASTEiJ_T0033283.1 MGP_CASTEiJ_G0018734.1 mouse_genomes_project 11 120552042 120554170 + MGP_CASTEiJ_P0033283 Sphk1 protein_coding protein_coding MGP_CASTEiJ_T0033284.1 MGP_CASTEiJ_G0018734.1 mouse_genomes_project 11 120552626 120553760 + Sphk1 protein_coding retained_intron MGP_CASTEiJ_T0033285.1 MGP_CASTEiJ_G0018734.1 mouse_genomes_project 11 120553211 120555142 + MGP_CASTEiJ_P0033285 Sphk1 protein_coding protein_coding MGP_CASTEiJ_T0100429.1 MGP_CASTEiJ_G0037342.1 mouse_genomes_project 11 27705757 27705898 + Gm22588 snoRNA snoRNA MGP_CASTEiJ_T0012164.1 MGP_CASTEiJ_G0010327.1 mouse_genomes_project 11 17980124 17981957 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006024.1 MGP_CASTEiJ_G0005044.1 mouse_genomes_project 11 20290425 20293047 - Gm12055 lincRNA lincRNA MGP_CASTEiJ_T0033479.1 MGP_CASTEiJ_G0018773.1 mouse_genomes_project 11 122669841 123106066 - MGP_CASTEiJ_P0033479 Rbfox3 protein_coding protein_coding MGP_CASTEiJ_T0033480.1 MGP_CASTEiJ_G0018773.1 mouse_genomes_project 11 122669843 122948273 - MGP_CASTEiJ_P0033480 Rbfox3 protein_coding protein_coding MGP_CASTEiJ_T0033481.1 MGP_CASTEiJ_G0018773.1 mouse_genomes_project 11 122671216 122751343 - MGP_CASTEiJ_P0033481 Rbfox3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033482.1 MGP_CASTEiJ_G0018773.1 mouse_genomes_project 11 122671216 123108097 - MGP_CASTEiJ_P0033482 Rbfox3 protein_coding protein_coding MGP_CASTEiJ_T0033483.1 MGP_CASTEiJ_G0018773.1 mouse_genomes_project 11 122671216 122751343 - MGP_CASTEiJ_P0033483 Rbfox3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033484.1 MGP_CASTEiJ_G0018773.1 mouse_genomes_project 11 122671216 123106078 - MGP_CASTEiJ_P0033484 Rbfox3 protein_coding protein_coding MGP_CASTEiJ_T0033485.1 MGP_CASTEiJ_G0018773.1 mouse_genomes_project 11 122671264 123106066 - MGP_CASTEiJ_P0033485 Rbfox3 protein_coding protein_coding MGP_CASTEiJ_T0033486.1 MGP_CASTEiJ_G0018773.1 mouse_genomes_project 11 122672053 123106068 - MGP_CASTEiJ_P0033486 Rbfox3 protein_coding protein_coding MGP_CASTEiJ_T0033487.1 MGP_CASTEiJ_G0018773.1 mouse_genomes_project 11 122676534 122687475 - MGP_CASTEiJ_P0033487 Rbfox3 protein_coding protein_coding MGP_CASTEiJ_T0033488.1 MGP_CASTEiJ_G0018773.1 mouse_genomes_project 11 122682977 122751568 - MGP_CASTEiJ_P0033488 Rbfox3 protein_coding protein_coding MGP_CASTEiJ_T0033489.1 MGP_CASTEiJ_G0018773.1 mouse_genomes_project 11 123005428 123083688 - Rbfox3 protein_coding processed_transcript MGP_CASTEiJ_T0033490.1 MGP_CASTEiJ_G0018773.1 mouse_genomes_project 11 123005430 123104521 - Rbfox3 protein_coding processed_transcript MGP_CASTEiJ_T0028703.1 MGP_CASTEiJ_G0017682.1 mouse_genomes_project 11 57992354 57993326 - MGP_CASTEiJ_P0028703 Olfr323 protein_coding protein_coding MGP_CASTEiJ_T0028704.1 MGP_CASTEiJ_G0017682.1 mouse_genomes_project 11 57992354 57993323 - MGP_CASTEiJ_P0028704 Olfr323 protein_coding protein_coding MGP_CASTEiJ_T0031989.1 MGP_CASTEiJ_G0018482.1 mouse_genomes_project 11 103789102 103791222 + MGP_CASTEiJ_P0031989 Hsd17b1 protein_coding protein_coding MGP_CASTEiJ_T0030960.1 MGP_CASTEiJ_G0018204.1 mouse_genomes_project 11 88208116 88249530 - MGP_CASTEiJ_P0030960 Dhx40 protein_coding protein_coding MGP_CASTEiJ_T0030961.1 MGP_CASTEiJ_G0018204.1 mouse_genomes_project 11 88214923 88242879 - MGP_CASTEiJ_P0030961 Dhx40 protein_coding protein_coding MGP_CASTEiJ_T0030962.1 MGP_CASTEiJ_G0018204.1 mouse_genomes_project 11 88225123 88231120 - Dhx40 protein_coding processed_transcript MGP_CASTEiJ_T0030963.1 MGP_CASTEiJ_G0018204.1 mouse_genomes_project 11 88241685 88248823 - Dhx40 protein_coding processed_transcript MGP_CASTEiJ_T0031114.1 MGP_CASTEiJ_G0018240.1 mouse_genomes_project 11 90665766 90697989 - MGP_CASTEiJ_P0031114 Dgke protein_coding protein_coding MGP_CASTEiJ_T0031115.1 MGP_CASTEiJ_G0018240.1 mouse_genomes_project 11 90668155 90691886 - MGP_CASTEiJ_P0031115 Dgke protein_coding protein_coding MGP_CASTEiJ_T0031116.1 MGP_CASTEiJ_G0018240.1 mouse_genomes_project 11 90669568 90691886 - MGP_CASTEiJ_P0031116 Dgke protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031117.1 MGP_CASTEiJ_G0018240.1 mouse_genomes_project 11 90671179 90691576 - MGP_CASTEiJ_P0031117 Dgke protein_coding unknown_likely_coding MGP_CASTEiJ_T0031118.1 MGP_CASTEiJ_G0018240.1 mouse_genomes_project 11 90671179 90691576 - MGP_CASTEiJ_P0031118 Dgke protein_coding unknown_likely_coding MGP_CASTEiJ_T0030046.1 MGP_CASTEiJ_G0017993.1 mouse_genomes_project 11 74610002 74610950 + MGP_CASTEiJ_P0030046 Olfr401 protein_coding protein_coding MGP_CASTEiJ_T0028171.1 MGP_CASTEiJ_G0017539.1 mouse_genomes_project 11 47987380 48006611 + MGP_CASTEiJ_P0028171 Mgat1 protein_coding protein_coding MGP_CASTEiJ_T0028172.1 MGP_CASTEiJ_G0017539.1 mouse_genomes_project 11 47987435 48006616 + MGP_CASTEiJ_P0028172 Mgat1 protein_coding protein_coding MGP_CASTEiJ_T0028173.1 MGP_CASTEiJ_G0017539.1 mouse_genomes_project 11 47987598 47989194 + Mgat1 protein_coding processed_transcript MGP_CASTEiJ_T0028174.1 MGP_CASTEiJ_G0017539.1 mouse_genomes_project 11 47988304 47989152 + Mgat1 protein_coding processed_transcript MGP_CASTEiJ_T0028175.1 MGP_CASTEiJ_G0017539.1 mouse_genomes_project 11 47988965 48004280 + Mgat1 protein_coding processed_transcript MGP_CASTEiJ_T0028176.1 MGP_CASTEiJ_G0017539.1 mouse_genomes_project 11 47991209 48006584 + MGP_CASTEiJ_P0028176 Mgat1 protein_coding protein_coding MGP_CASTEiJ_T0028177.1 MGP_CASTEiJ_G0017539.1 mouse_genomes_project 11 47991215 48004411 + Mgat1 protein_coding processed_transcript MGP_CASTEiJ_T0028178.1 MGP_CASTEiJ_G0017539.1 mouse_genomes_project 11 47992691 47995374 + Mgat1 protein_coding processed_transcript MGP_CASTEiJ_T0028179.1 MGP_CASTEiJ_G0017539.1 mouse_genomes_project 11 47994251 48006619 + MGP_CASTEiJ_P0028179 Mgat1 protein_coding protein_coding MGP_CASTEiJ_T0028180.1 MGP_CASTEiJ_G0017539.1 mouse_genomes_project 11 47994304 48001704 + Mgat1 protein_coding processed_transcript MGP_CASTEiJ_T0028181.1 MGP_CASTEiJ_G0017539.1 mouse_genomes_project 11 47994311 48004280 + Mgat1 protein_coding processed_transcript MGP_CASTEiJ_T0028182.1 MGP_CASTEiJ_G0017539.1 mouse_genomes_project 11 47994329 48004880 + MGP_CASTEiJ_P0028182 Mgat1 protein_coding protein_coding MGP_CASTEiJ_T0028183.1 MGP_CASTEiJ_G0017539.1 mouse_genomes_project 11 47999979 48001566 + Mgat1 protein_coding processed_transcript MGP_CASTEiJ_T0030564.1 MGP_CASTEiJ_G0018104.1 mouse_genomes_project 11 80139245 80139982 - MGP_CASTEiJ_P0030564 Gm9964 protein_coding protein_coding MGP_CASTEiJ_T0030041.1 MGP_CASTEiJ_G0017990.1 mouse_genomes_project 11 74501712 74513927 - MGP_CASTEiJ_P0030041 Olfr139 protein_coding protein_coding MGP_CASTEiJ_T0030042.1 MGP_CASTEiJ_G0017990.1 mouse_genomes_project 11 74501712 74502660 - MGP_CASTEiJ_P0030042 Olfr139 protein_coding protein_coding MGP_CASTEiJ_T0030043.1 MGP_CASTEiJ_G0017990.1 mouse_genomes_project 11 74507774 74511384 - Olfr139 protein_coding processed_transcript MGP_CASTEiJ_T0012148.1 MGP_CASTEiJ_G0010311.1 mouse_genomes_project 11 13949946 13950861 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028101.1 MGP_CASTEiJ_G0017517.1 mouse_genomes_project 11 45300202 45325900 - MGP_CASTEiJ_P0028101 Timd2 protein_coding protein_coding MGP_CASTEiJ_T0028102.1 MGP_CASTEiJ_G0017517.1 mouse_genomes_project 11 45302640 45340503 - MGP_CASTEiJ_P0028102 Timd2 protein_coding protein_coding MGP_CASTEiJ_T0028103.1 MGP_CASTEiJ_G0017517.1 mouse_genomes_project 11 45302640 45333683 - MGP_CASTEiJ_P0028103 Timd2 protein_coding protein_coding MGP_CASTEiJ_T0028104.1 MGP_CASTEiJ_G0017517.1 mouse_genomes_project 11 45322589 45340505 - MGP_CASTEiJ_P0028104 Timd2 protein_coding protein_coding MGP_CASTEiJ_T0003019.1 MGP_CASTEiJ_G0002815.1 mouse_genomes_project 11 14122873 14139853 - Egfros antisense antisense MGP_CASTEiJ_T0009457.1 MGP_CASTEiJ_G0007645.1 mouse_genomes_project 11 70604874 70604938 + Mir7115 miRNA miRNA MGP_CASTEiJ_T0030476.1 MGP_CASTEiJ_G0018081.1 mouse_genomes_project 11 79058468 79080538 + MGP_CASTEiJ_P0030476 Spag5 protein_coding protein_coding MGP_CASTEiJ_T0030477.1 MGP_CASTEiJ_G0018081.1 mouse_genomes_project 11 79058563 79073328 + Spag5 protein_coding retained_intron MGP_CASTEiJ_T0030478.1 MGP_CASTEiJ_G0018081.1 mouse_genomes_project 11 79058594 79073001 + Spag5 protein_coding retained_intron MGP_CASTEiJ_T0030479.1 MGP_CASTEiJ_G0018081.1 mouse_genomes_project 11 79071252 79072222 + Spag5 protein_coding retained_intron MGP_CASTEiJ_T0030480.1 MGP_CASTEiJ_G0018081.1 mouse_genomes_project 11 79073494 79074091 + Spag5 protein_coding retained_intron MGP_CASTEiJ_T0030481.1 MGP_CASTEiJ_G0018081.1 mouse_genomes_project 11 79073949 79077983 + Spag5 protein_coding retained_intron MGP_CASTEiJ_T0030482.1 MGP_CASTEiJ_G0018081.1 mouse_genomes_project 11 79076003 79078460 + Spag5 protein_coding processed_transcript MGP_CASTEiJ_T0030483.1 MGP_CASTEiJ_G0018081.1 mouse_genomes_project 11 79078010 79078821 + Spag5 protein_coding retained_intron MGP_CASTEiJ_T0099227.1 MGP_CASTEiJ_G0036140.1 mouse_genomes_project 11 34825313 34825419 + Gm22127 snRNA snRNA MGP_CASTEiJ_T0012325.1 MGP_CASTEiJ_G0010488.1 mouse_genomes_project 11 79356903 79358022 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012402.1 MGP_CASTEiJ_G0010565.1 mouse_genomes_project 11 111703103 111703586 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029580.1 MGP_CASTEiJ_G0017880.1 mouse_genomes_project 11 70091863 70094011 + MGP_CASTEiJ_P0029580 Cldn7 protein_coding protein_coding MGP_CASTEiJ_T0029581.1 MGP_CASTEiJ_G0017880.1 mouse_genomes_project 11 70092495 70094931 + MGP_CASTEiJ_P0029581 Cldn7 protein_coding protein_coding MGP_CASTEiJ_T0029582.1 MGP_CASTEiJ_G0017880.1 mouse_genomes_project 11 70093959 70094694 + MGP_CASTEiJ_P0029582 Cldn7 protein_coding protein_coding MGP_CASTEiJ_T0032870.1 MGP_CASTEiJ_G0018656.1 mouse_genomes_project 11 117359806 117385084 - MGP_CASTEiJ_P0032870 Fam104a protein_coding protein_coding MGP_CASTEiJ_T0006043.1 MGP_CASTEiJ_G0005059.1 mouse_genomes_project 11 27442418 27476551 - Gm12092 lincRNA lincRNA MGP_CASTEiJ_T0027877.1 MGP_CASTEiJ_G0017454.1 mouse_genomes_project 11 30429114 30497237 + MGP_CASTEiJ_P0027877 Ubtd2 protein_coding protein_coding MGP_CASTEiJ_T0003157.1 MGP_CASTEiJ_G0002929.1 mouse_genomes_project 11 97418228 97419624 - Gm11521 antisense antisense MGP_CASTEiJ_T0029318.1 MGP_CASTEiJ_G0017821.1 mouse_genomes_project 11 69028585 69052808 - MGP_CASTEiJ_P0029318 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029319.1 MGP_CASTEiJ_G0017821.1 mouse_genomes_project 11 69028912 69037461 - protein_coding retained_intron MGP_CASTEiJ_T0029320.1 MGP_CASTEiJ_G0017821.1 mouse_genomes_project 11 69029673 69033797 - protein_coding retained_intron MGP_CASTEiJ_T0029321.1 MGP_CASTEiJ_G0017821.1 mouse_genomes_project 11 69031158 69034534 - MGP_CASTEiJ_P0029321 protein_coding protein_coding MGP_CASTEiJ_T0029322.1 MGP_CASTEiJ_G0017821.1 mouse_genomes_project 11 69033911 69035010 - protein_coding retained_intron MGP_CASTEiJ_T0029323.1 MGP_CASTEiJ_G0017821.1 mouse_genomes_project 11 69036166 69040885 - MGP_CASTEiJ_P0029323 protein_coding protein_coding MGP_CASTEiJ_T0029324.1 MGP_CASTEiJ_G0017821.1 mouse_genomes_project 11 69040174 69051686 - protein_coding retained_intron MGP_CASTEiJ_T0098467.1 MGP_CASTEiJ_G0035398.1 mouse_genomes_project 11 91872261 91872380 - n-R5s72 rRNA rRNA MGP_CASTEiJ_T0012236.1 MGP_CASTEiJ_G0010399.1 mouse_genomes_project 11 47295435 47295970 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098459.1 MGP_CASTEiJ_G0035390.1 mouse_genomes_project 11 57044164 57044283 + n-R5s69 rRNA rRNA MGP_CASTEiJ_T0006028.1 MGP_CASTEiJ_G0005048.1 mouse_genomes_project 11 21811256 21815092 - Gm12065 lincRNA lincRNA MGP_CASTEiJ_T0006031.1 MGP_CASTEiJ_G0005051.1 mouse_genomes_project 11 22110109 22196961 + 4933430M04Rik lincRNA lincRNA MGP_CASTEiJ_T0032601.1 MGP_CASTEiJ_G0018601.1 mouse_genomes_project 11 109295066 109314903 - MGP_CASTEiJ_P0032601 Ccdc47 protein_coding protein_coding MGP_CASTEiJ_T0032602.1 MGP_CASTEiJ_G0018601.1 mouse_genomes_project 11 109298190 109301825 - MGP_CASTEiJ_P0032602 Ccdc47 protein_coding protein_coding MGP_CASTEiJ_T0032603.1 MGP_CASTEiJ_G0018601.1 mouse_genomes_project 11 109299029 109302821 - MGP_CASTEiJ_P0032603 Ccdc47 protein_coding protein_coding MGP_CASTEiJ_T0032604.1 MGP_CASTEiJ_G0018601.1 mouse_genomes_project 11 109299407 109300304 - MGP_CASTEiJ_P0032604 Ccdc47 protein_coding protein_coding MGP_CASTEiJ_T0032605.1 MGP_CASTEiJ_G0018601.1 mouse_genomes_project 11 109301689 109302928 - Ccdc47 protein_coding processed_transcript MGP_CASTEiJ_T0030509.1 MGP_CASTEiJ_G0018089.1 mouse_genomes_project 11 79276324 79280759 + MGP_CASTEiJ_P0030509 Vtn protein_coding unknown_likely_coding MGP_CASTEiJ_T0030510.1 MGP_CASTEiJ_G0018089.1 mouse_genomes_project 11 79277582 79279061 + Vtn protein_coding retained_intron MGP_CASTEiJ_T0030511.1 MGP_CASTEiJ_G0018089.1 mouse_genomes_project 11 79277611 79280754 + MGP_CASTEiJ_P0030511 Vtn protein_coding protein_coding MGP_CASTEiJ_T0030512.1 MGP_CASTEiJ_G0018089.1 mouse_genomes_project 11 79277663 79278720 + Vtn protein_coding retained_intron MGP_CASTEiJ_T0030513.1 MGP_CASTEiJ_G0018089.1 mouse_genomes_project 11 79279081 79280652 + Vtn protein_coding retained_intron MGP_CASTEiJ_T0003207.1 MGP_CASTEiJ_G0002970.1 mouse_genomes_project 11 109156567 109157886 - Taco1os antisense antisense MGP_CASTEiJ_T0029325.1 MGP_CASTEiJ_G0017822.1 mouse_genomes_project 11 69059926 69080399 + MGP_CASTEiJ_P0029325 Ctc1 protein_coding protein_coding MGP_CASTEiJ_T0029326.1 MGP_CASTEiJ_G0017822.1 mouse_genomes_project 11 69059941 69069181 + Ctc1 protein_coding retained_intron MGP_CASTEiJ_T0029327.1 MGP_CASTEiJ_G0017822.1 mouse_genomes_project 11 69060101 69080399 + MGP_CASTEiJ_P0029327 Ctc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029328.1 MGP_CASTEiJ_G0017822.1 mouse_genomes_project 11 69060119 69080401 + MGP_CASTEiJ_P0029328 Ctc1 protein_coding protein_coding MGP_CASTEiJ_T0029329.1 MGP_CASTEiJ_G0017822.1 mouse_genomes_project 11 69060149 69066762 + Ctc1 protein_coding processed_transcript MGP_CASTEiJ_T0029330.1 MGP_CASTEiJ_G0017822.1 mouse_genomes_project 11 69071693 69073218 + Ctc1 protein_coding retained_intron MGP_CASTEiJ_T0029331.1 MGP_CASTEiJ_G0017822.1 mouse_genomes_project 11 69073079 69075575 + Ctc1 protein_coding processed_transcript MGP_CASTEiJ_T0029332.1 MGP_CASTEiJ_G0017822.1 mouse_genomes_project 11 69075255 69078956 + Ctc1 protein_coding processed_transcript MGP_CASTEiJ_T0029333.1 MGP_CASTEiJ_G0017822.1 mouse_genomes_project 11 69077880 69079749 + Ctc1 protein_coding retained_intron MGP_CASTEiJ_T0029334.1 MGP_CASTEiJ_G0017822.1 mouse_genomes_project 11 69078528 69079734 + Ctc1 protein_coding retained_intron MGP_CASTEiJ_T0029335.1 MGP_CASTEiJ_G0017822.1 mouse_genomes_project 11 69078886 69080108 + Ctc1 protein_coding retained_intron MGP_CASTEiJ_T0032031.1 MGP_CASTEiJ_G0018493.1 mouse_genomes_project 11 103971280 103973502 + MGP_CASTEiJ_P0032031 Ramp2 protein_coding protein_coding MGP_CASTEiJ_T0032032.1 MGP_CASTEiJ_G0018493.1 mouse_genomes_project 11 103971564 103972936 + Ramp2 protein_coding retained_intron MGP_CASTEiJ_T0032033.1 MGP_CASTEiJ_G0018493.1 mouse_genomes_project 11 103971643 103986605 + MGP_CASTEiJ_P0032033 Ramp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032034.1 MGP_CASTEiJ_G0018493.1 mouse_genomes_project 11 103971681 103973502 + MGP_CASTEiJ_P0032034 Ramp2 protein_coding protein_coding MGP_CASTEiJ_T0032035.1 MGP_CASTEiJ_G0018493.1 mouse_genomes_project 11 103971684 103973502 + MGP_CASTEiJ_P0032035 Ramp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032036.1 MGP_CASTEiJ_G0018493.1 mouse_genomes_project 11 103971819 103972888 + MGP_CASTEiJ_P0032036 Ramp2 protein_coding protein_coding MGP_CASTEiJ_T0032037.1 MGP_CASTEiJ_G0018493.1 mouse_genomes_project 11 103972185 103973502 + Ramp2 protein_coding retained_intron MGP_CASTEiJ_T0032038.1 MGP_CASTEiJ_G0018493.1 mouse_genomes_project 11 103972344 103973316 + MGP_CASTEiJ_P0032038 Ramp2 protein_coding protein_coding MGP_CASTEiJ_T0016520.1 MGP_CASTEiJ_G0014518.1 mouse_genomes_project 11 100406333 100407314 - Gm11632 processed_transcript processed_transcript MGP_CASTEiJ_T0033452.1 MGP_CASTEiJ_G0018769.1 mouse_genomes_project 11 122561899 122574843 - MGP_CASTEiJ_P0033452 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033453.1 MGP_CASTEiJ_G0018769.1 mouse_genomes_project 11 122563781 122569057 - MGP_CASTEiJ_P0033453 protein_coding protein_coding MGP_CASTEiJ_T0033454.1 MGP_CASTEiJ_G0018769.1 mouse_genomes_project 11 122567513 122574695 - MGP_CASTEiJ_P0033454 protein_coding protein_coding MGP_CASTEiJ_T0033455.1 MGP_CASTEiJ_G0018769.1 mouse_genomes_project 11 122567715 122574715 - protein_coding processed_transcript MGP_CASTEiJ_T0033456.1 MGP_CASTEiJ_G0018769.1 mouse_genomes_project 11 122572576 122573862 - MGP_CASTEiJ_P0033456 protein_coding protein_coding MGP_CASTEiJ_T0033823.1 MGP_CASTEiJ_G0018834.1 mouse_genomes_project 11 125189293 125306753 - MGP_CASTEiJ_P0033823 Ccdc57 protein_coding protein_coding MGP_CASTEiJ_T0033824.1 MGP_CASTEiJ_G0018834.1 mouse_genomes_project 11 125189306 125244623 - Ccdc57 protein_coding processed_transcript MGP_CASTEiJ_T0033825.1 MGP_CASTEiJ_G0018834.1 mouse_genomes_project 11 125231610 125306687 - MGP_CASTEiJ_P0033825 Ccdc57 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033826.1 MGP_CASTEiJ_G0018834.1 mouse_genomes_project 11 125242120 125306687 - MGP_CASTEiJ_P0033826 Ccdc57 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033827.1 MGP_CASTEiJ_G0018834.1 mouse_genomes_project 11 125244743 125257858 - Ccdc57 protein_coding processed_transcript MGP_CASTEiJ_T0032487.1 MGP_CASTEiJ_G0018576.1 mouse_genomes_project 11 106937973 106957009 + MGP_CASTEiJ_P0032487 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032488.1 MGP_CASTEiJ_G0018576.1 mouse_genomes_project 11 106944161 106953844 + protein_coding retained_intron MGP_CASTEiJ_T0032489.1 MGP_CASTEiJ_G0018576.1 mouse_genomes_project 11 106951537 106955573 + MGP_CASTEiJ_P0032489 protein_coding protein_coding MGP_CASTEiJ_T0003010.1 MGP_CASTEiJ_G0002808.1 mouse_genomes_project 11 2880615 2882063 + Gm11967 antisense antisense MGP_CASTEiJ_T0032512.1 MGP_CASTEiJ_G0018581.1 mouse_genomes_project 11 107529584 107579187 - MGP_CASTEiJ_P0032512 Cdc27 protein_coding protein_coding MGP_CASTEiJ_T0032513.1 MGP_CASTEiJ_G0018581.1 mouse_genomes_project 11 107531776 107579096 - MGP_CASTEiJ_P0032513 Cdc27 protein_coding protein_coding MGP_CASTEiJ_T0032514.1 MGP_CASTEiJ_G0018581.1 mouse_genomes_project 11 107536876 107541964 - Cdc27 protein_coding processed_transcript MGP_CASTEiJ_T0032515.1 MGP_CASTEiJ_G0018581.1 mouse_genomes_project 11 107549035 107579182 - MGP_CASTEiJ_P0032515 Cdc27 protein_coding protein_coding MGP_CASTEiJ_T0032516.1 MGP_CASTEiJ_G0018581.1 mouse_genomes_project 11 107560606 107579324 - Cdc27 protein_coding processed_transcript MGP_CASTEiJ_T0102006.1 MGP_CASTEiJ_G0038731.1 mouse_genomes_project 11 96868777 96869508 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0009421.1 MGP_CASTEiJ_G0007609.1 mouse_genomes_project 11 41797032 41797097 - Mir146 miRNA miRNA MGP_CASTEiJ_T0028797.1 MGP_CASTEiJ_G0017713.1 mouse_genomes_project 11 59089538 59090649 - MGP_CASTEiJ_P0028797 Olfr223 protein_coding protein_coding MGP_CASTEiJ_T0016525.1 MGP_CASTEiJ_G0014523.1 mouse_genomes_project 11 106195980 106198862 - 1700028N14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0098327.1 MGP_CASTEiJ_G0035258.1 mouse_genomes_project 11 124970662 124971161 - pseudogene pseudogene MGP_CASTEiJ_T0031474.1 MGP_CASTEiJ_G0018325.1 mouse_genomes_project 11 99159658 99165656 - Pnpo protein_coding processed_transcript MGP_CASTEiJ_T0031475.1 MGP_CASTEiJ_G0018325.1 mouse_genomes_project 11 99159660 99165745 - MGP_CASTEiJ_P0031475 Pnpo protein_coding protein_coding MGP_CASTEiJ_T0031792.1 MGP_CASTEiJ_G0018406.1 mouse_genomes_project 11 102093344 102099011 - MGP_CASTEiJ_P0031792 Krt40 protein_coding protein_coding MGP_CASTEiJ_T0031793.1 MGP_CASTEiJ_G0018406.1 mouse_genomes_project 11 102093344 102099011 - MGP_CASTEiJ_P0031793 Krt40 protein_coding protein_coding MGP_CASTEiJ_T0016548.1 MGP_CASTEiJ_G0014538.1 mouse_genomes_project 11 124478066 124481399 - 2810410L24Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016549.1 MGP_CASTEiJ_G0014538.1 mouse_genomes_project 11 124480354 124482500 - 2810410L24Rik processed_transcript processed_transcript MGP_CASTEiJ_T0033491.1 MGP_CASTEiJ_G0018774.1 mouse_genomes_project 11 123192562 123199198 + MGP_CASTEiJ_P0033491 Enpp7 protein_coding protein_coding MGP_CASTEiJ_T0033492.1 MGP_CASTEiJ_G0018774.1 mouse_genomes_project 11 123192590 123199022 + MGP_CASTEiJ_P0033492 Enpp7 protein_coding protein_coding MGP_CASTEiJ_T0033493.1 MGP_CASTEiJ_G0018774.1 mouse_genomes_project 11 123192723 123229922 + MGP_CASTEiJ_P0033493 Enpp7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029488.1 MGP_CASTEiJ_G0017857.1 mouse_genomes_project 11 69782624 69785333 - MGP_CASTEiJ_P0029488 Tnfsf13 protein_coding protein_coding MGP_CASTEiJ_T0029489.1 MGP_CASTEiJ_G0017857.1 mouse_genomes_project 11 69782710 69785563 - MGP_CASTEiJ_P0029489 Tnfsf13 protein_coding protein_coding MGP_CASTEiJ_T0009512.1 MGP_CASTEiJ_G0007700.1 mouse_genomes_project 11 110086176 110086280 - Gm27322 miRNA miRNA MGP_CASTEiJ_T0012421.1 MGP_CASTEiJ_G0010584.1 mouse_genomes_project 11 120514832 120515139 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028461.1 MGP_CASTEiJ_G0017613.1 mouse_genomes_project 11 52556759 52557693 + MGP_CASTEiJ_P0028461 Gm9945 protein_coding protein_coding MGP_CASTEiJ_T0032423.1 MGP_CASTEiJ_G0018562.1 mouse_genomes_project 11 106050286 106057895 + MGP_CASTEiJ_P0032423 Hexim2 protein_coding protein_coding MGP_CASTEiJ_T0032424.1 MGP_CASTEiJ_G0018562.1 mouse_genomes_project 11 106051028 106058595 + MGP_CASTEiJ_P0032424 Hexim2 protein_coding protein_coding MGP_CASTEiJ_T0032425.1 MGP_CASTEiJ_G0018562.1 mouse_genomes_project 11 106051053 106058043 + MGP_CASTEiJ_P0032425 Hexim2 protein_coding protein_coding MGP_CASTEiJ_T0032426.1 MGP_CASTEiJ_G0018562.1 mouse_genomes_project 11 106051059 106059276 + MGP_CASTEiJ_P0032426 Hexim2 protein_coding protein_coding MGP_CASTEiJ_T0032427.1 MGP_CASTEiJ_G0018562.1 mouse_genomes_project 11 106051559 106057676 + MGP_CASTEiJ_P0032427 Hexim2 protein_coding protein_coding MGP_CASTEiJ_T0012307.1 MGP_CASTEiJ_G0010470.1 mouse_genomes_project 11 73595454 73596293 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031062.1 MGP_CASTEiJ_G0018229.1 mouse_genomes_project 11 89583022 89589409 + MGP_CASTEiJ_P0031062 Srsf1 protein_coding protein_coding MGP_CASTEiJ_T0031063.1 MGP_CASTEiJ_G0018229.1 mouse_genomes_project 11 89583367 89587140 + MGP_CASTEiJ_P0031063 Srsf1 protein_coding protein_coding MGP_CASTEiJ_T0031064.1 MGP_CASTEiJ_G0018229.1 mouse_genomes_project 11 89583374 89584476 + Srsf1 protein_coding retained_intron MGP_CASTEiJ_T0031065.1 MGP_CASTEiJ_G0018229.1 mouse_genomes_project 11 89583417 89586820 + MGP_CASTEiJ_P0031065 Srsf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031066.1 MGP_CASTEiJ_G0018229.1 mouse_genomes_project 11 89584216 89587122 + MGP_CASTEiJ_P0031066 Srsf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031067.1 MGP_CASTEiJ_G0018229.1 mouse_genomes_project 11 89584238 89586772 + MGP_CASTEiJ_P0031067 Srsf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031068.1 MGP_CASTEiJ_G0018229.1 mouse_genomes_project 11 89585061 89586701 + Srsf1 protein_coding retained_intron MGP_CASTEiJ_T0030786.1 MGP_CASTEiJ_G0018168.1 mouse_genomes_project 11 84944598 84946932 + MGP_CASTEiJ_P0030786 Wfdc18 protein_coding protein_coding MGP_CASTEiJ_T0030787.1 MGP_CASTEiJ_G0018168.1 mouse_genomes_project 11 84944706 84946923 + MGP_CASTEiJ_P0030787 Wfdc18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030788.1 MGP_CASTEiJ_G0018168.1 mouse_genomes_project 11 84944708 84946282 + Wfdc18 protein_coding retained_intron MGP_CASTEiJ_T0012334.1 MGP_CASTEiJ_G0010497.1 mouse_genomes_project 11 82573828 82574647 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030931.1 MGP_CASTEiJ_G0018199.1 mouse_genomes_project 11 87916084 87967564 - MGP_CASTEiJ_P0030931 Rps6kb1 protein_coding protein_coding MGP_CASTEiJ_T0030932.1 MGP_CASTEiJ_G0018199.1 mouse_genomes_project 11 87919245 87967564 - Rps6kb1 protein_coding retained_intron MGP_CASTEiJ_T0030933.1 MGP_CASTEiJ_G0018199.1 mouse_genomes_project 11 87919760 87967495 - MGP_CASTEiJ_P0030933 Rps6kb1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030934.1 MGP_CASTEiJ_G0018199.1 mouse_genomes_project 11 87919809 87931484 - Rps6kb1 protein_coding processed_transcript MGP_CASTEiJ_T0030935.1 MGP_CASTEiJ_G0018199.1 mouse_genomes_project 11 87933459 87939892 - Rps6kb1 protein_coding processed_transcript MGP_CASTEiJ_T0030936.1 MGP_CASTEiJ_G0018199.1 mouse_genomes_project 11 87933824 87967533 - MGP_CASTEiJ_P0030936 Rps6kb1 protein_coding protein_coding MGP_CASTEiJ_T0030937.1 MGP_CASTEiJ_G0018199.1 mouse_genomes_project 11 87939496 87955132 - Rps6kb1 protein_coding retained_intron MGP_CASTEiJ_T0030938.1 MGP_CASTEiJ_G0018199.1 mouse_genomes_project 11 87955063 87967524 - MGP_CASTEiJ_P0030938 Rps6kb1 protein_coding protein_coding MGP_CASTEiJ_T0030708.1 MGP_CASTEiJ_G0018141.1 mouse_genomes_project 11 83972821 83989548 - MGP_CASTEiJ_P0030708 Rad51d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030709.1 MGP_CASTEiJ_G0018141.1 mouse_genomes_project 11 83973086 83989573 - MGP_CASTEiJ_P0030709 Rad51d protein_coding protein_coding MGP_CASTEiJ_T0030710.1 MGP_CASTEiJ_G0018141.1 mouse_genomes_project 11 83975153 83989548 - MGP_CASTEiJ_P0030710 Rad51d protein_coding protein_coding MGP_CASTEiJ_T0030711.1 MGP_CASTEiJ_G0018141.1 mouse_genomes_project 11 83975153 83989548 - MGP_CASTEiJ_P0030711 Rad51d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030712.1 MGP_CASTEiJ_G0018141.1 mouse_genomes_project 11 83975153 83989548 - MGP_CASTEiJ_P0030712 Rad51d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030713.1 MGP_CASTEiJ_G0018141.1 mouse_genomes_project 11 83975153 83989548 - MGP_CASTEiJ_P0030713 Rad51d protein_coding protein_coding MGP_CASTEiJ_T0027106.1 MGP_CASTEiJ_G0017288.1 mouse_genomes_project 11 914704 930384 + MGP_CASTEiJ_P0027106 Sec14l3 protein_coding protein_coding MGP_CASTEiJ_T0027107.1 MGP_CASTEiJ_G0017288.1 mouse_genomes_project 11 914754 922331 + Sec14l3 protein_coding retained_intron MGP_CASTEiJ_T0027108.1 MGP_CASTEiJ_G0017288.1 mouse_genomes_project 11 914815 928974 + Sec14l3 protein_coding processed_transcript MGP_CASTEiJ_T0027109.1 MGP_CASTEiJ_G0017288.1 mouse_genomes_project 11 914815 928974 + Sec14l3 protein_coding processed_transcript MGP_CASTEiJ_T0027110.1 MGP_CASTEiJ_G0017288.1 mouse_genomes_project 11 924296 929410 + Sec14l3 protein_coding processed_transcript MGP_CASTEiJ_T0033398.1 MGP_CASTEiJ_G0018756.1 mouse_genomes_project 11 121943421 121973154 + MGP_CASTEiJ_P0033398 Gm20708 protein_coding protein_coding MGP_CASTEiJ_T0009458.1 MGP_CASTEiJ_G0007646.1 mouse_genomes_project 11 70911553 70911623 + Mir6925 miRNA miRNA MGP_CASTEiJ_T0102003.1 MGP_CASTEiJ_G0038728.1 mouse_genomes_project 11 96722320 96723098 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0030504.1 MGP_CASTEiJ_G0018088.1 mouse_genomes_project 11 79249594 79275939 - MGP_CASTEiJ_P0030504 Sarm1 protein_coding protein_coding MGP_CASTEiJ_T0030505.1 MGP_CASTEiJ_G0018088.1 mouse_genomes_project 11 79250477 79261077 - Sarm1 protein_coding retained_intron MGP_CASTEiJ_T0030506.1 MGP_CASTEiJ_G0018088.1 mouse_genomes_project 11 79250555 79276245 - MGP_CASTEiJ_P0030506 Sarm1 protein_coding protein_coding MGP_CASTEiJ_T0030507.1 MGP_CASTEiJ_G0018088.1 mouse_genomes_project 11 79260112 79264620 - Sarm1 protein_coding retained_intron MGP_CASTEiJ_T0030508.1 MGP_CASTEiJ_G0018088.1 mouse_genomes_project 11 79268260 79276177 - Sarm1 protein_coding processed_transcript MGP_CASTEiJ_T0028712.1 MGP_CASTEiJ_G0017687.1 mouse_genomes_project 11 58169387 58173448 + MGP_CASTEiJ_P0028712 Olfr314 protein_coding protein_coding MGP_CASTEiJ_T0028713.1 MGP_CASTEiJ_G0017687.1 mouse_genomes_project 11 58172566 58173697 + MGP_CASTEiJ_P0028713 Olfr314 protein_coding protein_coding MGP_CASTEiJ_T0006183.1 MGP_CASTEiJ_G0005167.1 mouse_genomes_project 11 113227853 113230491 + 1700023C21Rik lincRNA lincRNA MGP_CASTEiJ_T0028694.1 MGP_CASTEiJ_G0017676.1 mouse_genomes_project 11 57896711 57912036 - MGP_CASTEiJ_P0028694 protein_coding protein_coding MGP_CASTEiJ_T0003244.1 MGP_CASTEiJ_G0002999.1 mouse_genomes_project 11 122268013 122273271 + Gm11738 antisense antisense MGP_CASTEiJ_T0027950.1 MGP_CASTEiJ_G0017478.1 mouse_genomes_project 11 34082069 35363446 - MGP_CASTEiJ_P0027950 Tenm2 protein_coding protein_coding MGP_CASTEiJ_T0027951.1 MGP_CASTEiJ_G0017478.1 mouse_genomes_project 11 34083079 35060820 - MGP_CASTEiJ_P0027951 Tenm2 protein_coding protein_coding MGP_CASTEiJ_T0027952.1 MGP_CASTEiJ_G0017478.1 mouse_genomes_project 11 34083452 35060820 - MGP_CASTEiJ_P0027952 Tenm2 protein_coding protein_coding MGP_CASTEiJ_T0027953.1 MGP_CASTEiJ_G0017478.1 mouse_genomes_project 11 34223966 35060820 - Tenm2 protein_coding processed_transcript MGP_CASTEiJ_T0027954.1 MGP_CASTEiJ_G0017478.1 mouse_genomes_project 11 34225238 34775700 - Tenm2 protein_coding processed_transcript MGP_CASTEiJ_T0027955.1 MGP_CASTEiJ_G0017478.1 mouse_genomes_project 11 34251242 34585953 - Tenm2 protein_coding processed_transcript MGP_CASTEiJ_T0027957.1 MGP_CASTEiJ_G0017478.1 mouse_genomes_project 11 34473109 34521328 - Tenm2 protein_coding processed_transcript MGP_CASTEiJ_T0027958.1 MGP_CASTEiJ_G0017478.1 mouse_genomes_project 11 35060858 35363528 - Tenm2 protein_coding processed_transcript MGP_CASTEiJ_T0028462.1 MGP_CASTEiJ_G0017614.1 mouse_genomes_project 11 52601185 52619861 + MGP_CASTEiJ_P0028462 Sept8 protein_coding protein_coding MGP_CASTEiJ_T0028463.1 MGP_CASTEiJ_G0017614.1 mouse_genomes_project 11 52601676 52631038 + MGP_CASTEiJ_P0028463 Sept8 protein_coding protein_coding MGP_CASTEiJ_T0028464.1 MGP_CASTEiJ_G0017614.1 mouse_genomes_project 11 52601700 52636472 + MGP_CASTEiJ_P0028464 Sept8 protein_coding protein_coding MGP_CASTEiJ_T0028465.1 MGP_CASTEiJ_G0017614.1 mouse_genomes_project 11 52601730 52631039 + MGP_CASTEiJ_P0028465 Sept8 protein_coding protein_coding MGP_CASTEiJ_T0028466.1 MGP_CASTEiJ_G0017614.1 mouse_genomes_project 11 52601841 52628815 + MGP_CASTEiJ_P0028466 Sept8 protein_coding protein_coding MGP_CASTEiJ_T0028467.1 MGP_CASTEiJ_G0017614.1 mouse_genomes_project 11 52601860 52628764 + MGP_CASTEiJ_P0028467 Sept8 protein_coding protein_coding MGP_CASTEiJ_T0028468.1 MGP_CASTEiJ_G0017614.1 mouse_genomes_project 11 52616635 52622524 + Sept8 protein_coding processed_transcript MGP_CASTEiJ_T0003119.1 MGP_CASTEiJ_G0002900.1 mouse_genomes_project 11 77639912 77640872 - Gm12343 antisense antisense MGP_CASTEiJ_T0003260.1 MGP_CASTEiJ_G0003011.1 mouse_genomes_project 11 125339028 125339949 + Gm28192 antisense antisense MGP_CASTEiJ_T0012117.1 MGP_CASTEiJ_G0010280.1 mouse_genomes_project 11 1821761 1822257 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011462.1 MGP_CASTEiJ_G0009648.1 mouse_genomes_project 11 73855420 73856357 - MGP_CASTEiJ_P0011462 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0100484.1 MGP_CASTEiJ_G0037397.1 mouse_genomes_project 11 124013721 124013801 + Gm23663 snoRNA snoRNA MGP_CASTEiJ_T0031808.1 MGP_CASTEiJ_G0018421.1 mouse_genomes_project 11 102234174 102235186 - MGP_CASTEiJ_P0031808 Gm11563 protein_coding protein_coding MGP_CASTEiJ_T0029507.1 MGP_CASTEiJ_G0017862.1 mouse_genomes_project 11 69893799 69905606 - MGP_CASTEiJ_P0029507 Chrnb1 protein_coding protein_coding MGP_CASTEiJ_T0029508.1 MGP_CASTEiJ_G0017862.1 mouse_genomes_project 11 69902386 69903933 - Chrnb1 protein_coding retained_intron MGP_CASTEiJ_T0029509.1 MGP_CASTEiJ_G0017862.1 mouse_genomes_project 11 69902461 69903491 - Chrnb1 protein_coding retained_intron MGP_CASTEiJ_T0029510.1 MGP_CASTEiJ_G0017862.1 mouse_genomes_project 11 69903190 69905568 - Chrnb1 protein_coding processed_transcript MGP_CASTEiJ_T0006068.1 MGP_CASTEiJ_G0005081.1 mouse_genomes_project 11 45038839 45050246 - lincRNA lincRNA MGP_CASTEiJ_T0028250.1 MGP_CASTEiJ_G0017560.1 mouse_genomes_project 11 49062294 49095979 - MGP_CASTEiJ_P0028250 Canx protein_coding protein_coding MGP_CASTEiJ_T0028251.1 MGP_CASTEiJ_G0017560.1 mouse_genomes_project 11 49062800 49095979 - MGP_CASTEiJ_P0028251 Canx protein_coding protein_coding MGP_CASTEiJ_T0028252.1 MGP_CASTEiJ_G0017560.1 mouse_genomes_project 11 49064553 49067742 - Canx protein_coding processed_transcript MGP_CASTEiJ_T0028253.1 MGP_CASTEiJ_G0017560.1 mouse_genomes_project 11 49065718 49066674 - Canx protein_coding processed_transcript MGP_CASTEiJ_T0028254.1 MGP_CASTEiJ_G0017560.1 mouse_genomes_project 11 49067191 49069354 - Canx protein_coding processed_transcript MGP_CASTEiJ_T0031404.1 MGP_CASTEiJ_G0018310.1 mouse_genomes_project 11 98443771 98447175 + MGP_CASTEiJ_P0031404 Hoxb8 protein_coding protein_coding MGP_CASTEiJ_T0031405.1 MGP_CASTEiJ_G0018310.1 mouse_genomes_project 11 98444422 98446175 + MGP_CASTEiJ_P0031405 Hoxb8 protein_coding protein_coding MGP_CASTEiJ_T0031406.1 MGP_CASTEiJ_G0018310.1 mouse_genomes_project 11 98444591 98446553 + MGP_CASTEiJ_P0031406 Hoxb8 protein_coding protein_coding MGP_CASTEiJ_T0030972.1 MGP_CASTEiJ_G0018210.1 mouse_genomes_project 11 88579383 88674201 + MGP_CASTEiJ_P0030972 Trim37 protein_coding protein_coding MGP_CASTEiJ_T0030973.1 MGP_CASTEiJ_G0018210.1 mouse_genomes_project 11 88579610 88602136 + MGP_CASTEiJ_P0030973 Trim37 protein_coding protein_coding MGP_CASTEiJ_T0030974.1 MGP_CASTEiJ_G0018210.1 mouse_genomes_project 11 88579746 88682905 + MGP_CASTEiJ_P0030974 Trim37 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030975.1 MGP_CASTEiJ_G0018210.1 mouse_genomes_project 11 88579747 88682297 + MGP_CASTEiJ_P0030975 Trim37 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030976.1 MGP_CASTEiJ_G0018210.1 mouse_genomes_project 11 88579747 88705455 + MGP_CASTEiJ_P0030976 Trim37 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030977.1 MGP_CASTEiJ_G0018210.1 mouse_genomes_project 11 88639247 88662063 + Trim37 protein_coding retained_intron MGP_CASTEiJ_T0030978.1 MGP_CASTEiJ_G0018210.1 mouse_genomes_project 11 88642779 88671767 + MGP_CASTEiJ_P0030978 Trim37 protein_coding protein_coding MGP_CASTEiJ_T0009427.1 MGP_CASTEiJ_G0007615.1 mouse_genomes_project 11 48822242 48822340 + Mir340 miRNA miRNA MGP_CASTEiJ_T0029031.1 MGP_CASTEiJ_G0017757.1 mouse_genomes_project 11 61409990 61504509 - MGP_CASTEiJ_P0029031 Ulk2 protein_coding protein_coding MGP_CASTEiJ_T0029032.1 MGP_CASTEiJ_G0017757.1 mouse_genomes_project 11 61411843 61503938 - Ulk2 protein_coding processed_transcript MGP_CASTEiJ_T0029033.1 MGP_CASTEiJ_G0017757.1 mouse_genomes_project 11 61437279 61441401 - Ulk2 protein_coding processed_transcript MGP_CASTEiJ_T0032422.1 MGP_CASTEiJ_G0018561.1 mouse_genomes_project 11 106032409 106036420 + MGP_CASTEiJ_P0032422 Hexim1 protein_coding protein_coding MGP_CASTEiJ_T0016426.1 MGP_CASTEiJ_G0014467.1 mouse_genomes_project 11 8882052 8930667 - Gm11999 processed_transcript processed_transcript MGP_CASTEiJ_T0012275.1 MGP_CASTEiJ_G0010438.1 mouse_genomes_project 11 59997772 59998533 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100425.1 MGP_CASTEiJ_G0037338.1 mouse_genomes_project 11 22863491 22863619 - Gm24255 snoRNA snoRNA MGP_CASTEiJ_T0030759.1 MGP_CASTEiJ_G0018157.1 mouse_genomes_project 11 84609628 84613043 + MGP_CASTEiJ_P0030759 1700020L24Rik protein_coding protein_coding MGP_CASTEiJ_T0030760.1 MGP_CASTEiJ_G0018157.1 mouse_genomes_project 11 84612096 84612638 + MGP_CASTEiJ_P0030760 1700020L24Rik protein_coding protein_coding MGP_CASTEiJ_T0032053.1 MGP_CASTEiJ_G0018497.1 mouse_genomes_project 11 104009481 104016980 + Cntd1 protein_coding processed_transcript MGP_CASTEiJ_T0032054.1 MGP_CASTEiJ_G0018497.1 mouse_genomes_project 11 104009565 104019100 + MGP_CASTEiJ_P0032054 Cntd1 protein_coding protein_coding MGP_CASTEiJ_T0032055.1 MGP_CASTEiJ_G0018497.1 mouse_genomes_project 11 104016489 104026957 + Cntd1 protein_coding processed_transcript MGP_CASTEiJ_T0031157.1 MGP_CASTEiJ_G0018252.1 mouse_genomes_project 11 93246109 93307114 - MGP_CASTEiJ_P0031157 Kif2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0031158.1 MGP_CASTEiJ_G0018252.1 mouse_genomes_project 11 93304931 93307175 - MGP_CASTEiJ_P0031158 Kif2b protein_coding protein_coding MGP_CASTEiJ_T0030297.1 MGP_CASTEiJ_G0018050.1 mouse_genomes_project 11 77680987 77717442 - MGP_CASTEiJ_P0030297 Nsrp1 protein_coding protein_coding MGP_CASTEiJ_T0030298.1 MGP_CASTEiJ_G0018050.1 mouse_genomes_project 11 77688435 77717044 - MGP_CASTEiJ_P0030298 Nsrp1 protein_coding protein_coding MGP_CASTEiJ_T0030299.1 MGP_CASTEiJ_G0018050.1 mouse_genomes_project 11 77692260 77717442 - Nsrp1 protein_coding processed_transcript MGP_CASTEiJ_T0003208.1 MGP_CASTEiJ_G0002971.1 mouse_genomes_project 11 109973959 109975298 - Gm11706 antisense antisense MGP_CASTEiJ_T0100448.1 MGP_CASTEiJ_G0037361.1 mouse_genomes_project 11 69764588 69764731 - snoRNA snoRNA MGP_CASTEiJ_T0031750.1 MGP_CASTEiJ_G0018388.1 mouse_genomes_project 11 101497244 101498081 - MGP_CASTEiJ_P0031750 Gjd3 protein_coding protein_coding MGP_CASTEiJ_T0011461.1 MGP_CASTEiJ_G0009647.1 mouse_genomes_project 11 73790987 73791969 + MGP_CASTEiJ_P0011461 Olfr377-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0016446.1 MGP_CASTEiJ_G0014477.1 mouse_genomes_project 11 28149331 28164850 + Gm8098 processed_transcript processed_transcript MGP_CASTEiJ_T0000807.1 MGP_CASTEiJ_G0000747.1 mouse_genomes_project 11 29618666 29619040 + TEC TEC MGP_CASTEiJ_T0029418.1 MGP_CASTEiJ_G0017842.1 mouse_genomes_project 11 69464460 69487270 - MGP_CASTEiJ_P0029418 Kdm6b protein_coding protein_coding MGP_CASTEiJ_T0029419.1 MGP_CASTEiJ_G0017842.1 mouse_genomes_project 11 69469277 69470219 - Kdm6b protein_coding processed_transcript MGP_CASTEiJ_T0030689.1 MGP_CASTEiJ_G0018139.1 mouse_genomes_project 11 83870495 83893469 + MGP_CASTEiJ_P0030689 Lig3 protein_coding protein_coding MGP_CASTEiJ_T0030690.1 MGP_CASTEiJ_G0018139.1 mouse_genomes_project 11 83870521 83893588 + MGP_CASTEiJ_P0030690 Lig3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030691.1 MGP_CASTEiJ_G0018139.1 mouse_genomes_project 11 83870522 83894877 + MGP_CASTEiJ_P0030691 Lig3 protein_coding protein_coding MGP_CASTEiJ_T0030692.1 MGP_CASTEiJ_G0018139.1 mouse_genomes_project 11 83870529 83887087 + Lig3 protein_coding retained_intron MGP_CASTEiJ_T0030693.1 MGP_CASTEiJ_G0018139.1 mouse_genomes_project 11 83870572 83891260 + MGP_CASTEiJ_P0030693 Lig3 protein_coding protein_coding MGP_CASTEiJ_T0030694.1 MGP_CASTEiJ_G0018139.1 mouse_genomes_project 11 83870580 83892633 + MGP_CASTEiJ_P0030694 Lig3 protein_coding protein_coding MGP_CASTEiJ_T0030695.1 MGP_CASTEiJ_G0018139.1 mouse_genomes_project 11 83870580 83892632 + MGP_CASTEiJ_P0030695 Lig3 protein_coding protein_coding MGP_CASTEiJ_T0030696.1 MGP_CASTEiJ_G0018139.1 mouse_genomes_project 11 83870585 83880845 + MGP_CASTEiJ_P0030696 Lig3 protein_coding protein_coding MGP_CASTEiJ_T0030697.1 MGP_CASTEiJ_G0018139.1 mouse_genomes_project 11 83870585 83880847 + MGP_CASTEiJ_P0030697 Lig3 protein_coding protein_coding MGP_CASTEiJ_T0030698.1 MGP_CASTEiJ_G0018139.1 mouse_genomes_project 11 83870590 83894801 + MGP_CASTEiJ_P0030698 Lig3 protein_coding protein_coding MGP_CASTEiJ_T0030699.1 MGP_CASTEiJ_G0018139.1 mouse_genomes_project 11 83870633 83893588 + MGP_CASTEiJ_P0030699 Lig3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030700.1 MGP_CASTEiJ_G0018139.1 mouse_genomes_project 11 83870633 83893588 + MGP_CASTEiJ_P0030700 Lig3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030701.1 MGP_CASTEiJ_G0018139.1 mouse_genomes_project 11 83886230 83890139 + Lig3 protein_coding retained_intron MGP_CASTEiJ_T0030702.1 MGP_CASTEiJ_G0018139.1 mouse_genomes_project 11 83887796 83890156 + Lig3 protein_coding retained_intron MGP_CASTEiJ_T0030703.1 MGP_CASTEiJ_G0018139.1 mouse_genomes_project 11 83888927 83894877 + MGP_CASTEiJ_P0030703 Lig3 protein_coding protein_coding MGP_CASTEiJ_T0033196.1 MGP_CASTEiJ_G0018720.1 mouse_genomes_project 11 120104861 120111896 - MGP_CASTEiJ_P0033196 Mrpl38 protein_coding protein_coding MGP_CASTEiJ_T0033197.1 MGP_CASTEiJ_G0018720.1 mouse_genomes_project 11 120104865 120111803 - Mrpl38 protein_coding retained_intron MGP_CASTEiJ_T0033198.1 MGP_CASTEiJ_G0018720.1 mouse_genomes_project 11 120105840 120111817 - Mrpl38 protein_coding retained_intron MGP_CASTEiJ_T0033199.1 MGP_CASTEiJ_G0018720.1 mouse_genomes_project 11 120107105 120107500 - Mrpl38 protein_coding retained_intron MGP_CASTEiJ_T0033200.1 MGP_CASTEiJ_G0018720.1 mouse_genomes_project 11 120107299 120107671 - Mrpl38 protein_coding retained_intron MGP_CASTEiJ_T0033201.1 MGP_CASTEiJ_G0018720.1 mouse_genomes_project 11 120110808 120111893 - Mrpl38 protein_coding retained_intron MGP_CASTEiJ_T0011464.1 MGP_CASTEiJ_G0009650.1 mouse_genomes_project 11 74385385 74390420 + MGP_CASTEiJ_P0011464 Olfr396-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0011465.1 MGP_CASTEiJ_G0009650.1 mouse_genomes_project 11 74389700 74390333 + MGP_CASTEiJ_P0011465 Olfr396-ps1 polymorphic_pseudogene protein_coding MGP_CASTEiJ_T0012177.1 MGP_CASTEiJ_G0010340.1 mouse_genomes_project 11 19448351 19448915 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099235.1 MGP_CASTEiJ_G0036148.1 mouse_genomes_project 11 53987355 53987525 + Gm23021 snRNA snRNA MGP_CASTEiJ_T0009445.1 MGP_CASTEiJ_G0007633.1 mouse_genomes_project 11 67031201 67031273 + Mir6923 miRNA miRNA MGP_CASTEiJ_T0028320.1 MGP_CASTEiJ_G0017575.1 mouse_genomes_project 11 49832294 49833437 + MGP_CASTEiJ_P0028320 Olfr51 protein_coding protein_coding MGP_CASTEiJ_T0016472.1 MGP_CASTEiJ_G0014492.1 mouse_genomes_project 11 66925907 66936750 + Gm12299 processed_transcript processed_transcript MGP_CASTEiJ_T0028872.1 MGP_CASTEiJ_G0017726.1 mouse_genomes_project 11 59945800 59962204 - MGP_CASTEiJ_P0028872 Atpaf2 protein_coding protein_coding MGP_CASTEiJ_T0028873.1 MGP_CASTEiJ_G0017726.1 mouse_genomes_project 11 59946657 59962171 - MGP_CASTEiJ_P0028873 Atpaf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028874.1 MGP_CASTEiJ_G0017726.1 mouse_genomes_project 11 59949018 59962195 - Atpaf2 protein_coding processed_transcript MGP_CASTEiJ_T0028875.1 MGP_CASTEiJ_G0017726.1 mouse_genomes_project 11 59950970 59962188 - Atpaf2 protein_coding processed_transcript MGP_CASTEiJ_T0028876.1 MGP_CASTEiJ_G0017726.1 mouse_genomes_project 11 59952549 59963610 - Atpaf2 protein_coding processed_transcript MGP_CASTEiJ_T0028877.1 MGP_CASTEiJ_G0017726.1 mouse_genomes_project 11 59954388 59962189 - Atpaf2 protein_coding retained_intron MGP_CASTEiJ_T0033881.1 MGP_CASTEiJ_G0018847.1 mouse_genomes_project 11 125649227 125698460 + MGP_CASTEiJ_P0033881 Foxk2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033882.1 MGP_CASTEiJ_G0018847.1 mouse_genomes_project 11 125649227 125698460 + MGP_CASTEiJ_P0033882 Foxk2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033883.1 MGP_CASTEiJ_G0018847.1 mouse_genomes_project 11 125649312 125701241 + MGP_CASTEiJ_P0033883 Foxk2 protein_coding protein_coding MGP_CASTEiJ_T0033884.1 MGP_CASTEiJ_G0018847.1 mouse_genomes_project 11 125682285 125688568 + Foxk2 protein_coding processed_transcript MGP_CASTEiJ_T0033885.1 MGP_CASTEiJ_G0018847.1 mouse_genomes_project 11 125689978 125691330 + Foxk2 protein_coding retained_intron MGP_CASTEiJ_T0099233.1 MGP_CASTEiJ_G0036146.1 mouse_genomes_project 11 52463537 52463644 + Gm25930 snRNA snRNA MGP_CASTEiJ_T0012399.1 MGP_CASTEiJ_G0010562.1 mouse_genomes_project 11 110358151 110358484 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030839.1 MGP_CASTEiJ_G0018180.1 mouse_genomes_project 11 86119674 86126132 - MGP_CASTEiJ_P0030839 Mrm1 protein_coding protein_coding MGP_CASTEiJ_T0030840.1 MGP_CASTEiJ_G0018180.1 mouse_genomes_project 11 86121316 86121972 - Mrm1 protein_coding retained_intron MGP_CASTEiJ_T0030841.1 MGP_CASTEiJ_G0018180.1 mouse_genomes_project 11 86121586 86125351 - Mrm1 protein_coding processed_transcript MGP_CASTEiJ_T0102008.1 MGP_CASTEiJ_G0038733.1 mouse_genomes_project 11 102239077 102239287 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0029746.1 MGP_CASTEiJ_G0017912.1 mouse_genomes_project 11 70801232 70805547 - MGP_CASTEiJ_P0029746 Chrne protein_coding protein_coding MGP_CASTEiJ_T0029747.1 MGP_CASTEiJ_G0017912.1 mouse_genomes_project 11 70801232 70805569 - MGP_CASTEiJ_P0029747 Chrne protein_coding protein_coding MGP_CASTEiJ_T0029748.1 MGP_CASTEiJ_G0017912.1 mouse_genomes_project 11 70801234 70802023 - Chrne protein_coding retained_intron MGP_CASTEiJ_T0029749.1 MGP_CASTEiJ_G0017912.1 mouse_genomes_project 11 70801242 70802047 - Chrne protein_coding retained_intron MGP_CASTEiJ_T0031639.1 MGP_CASTEiJ_G0018362.1 mouse_genomes_project 11 100671304 100675545 - MGP_CASTEiJ_P0031639 Neurod2 protein_coding protein_coding MGP_CASTEiJ_T0027510.1 MGP_CASTEiJ_G0017377.1 mouse_genomes_project 11 16182662 16326229 - MGP_CASTEiJ_P0027510 Meis1 protein_coding protein_coding MGP_CASTEiJ_T0027511.1 MGP_CASTEiJ_G0017377.1 mouse_genomes_project 11 16182669 16326980 - MGP_CASTEiJ_P0027511 Meis1 protein_coding protein_coding MGP_CASTEiJ_T0027512.1 MGP_CASTEiJ_G0017377.1 mouse_genomes_project 11 16183280 16326964 - MGP_CASTEiJ_P0027512 Meis1 protein_coding protein_coding MGP_CASTEiJ_T0027513.1 MGP_CASTEiJ_G0017377.1 mouse_genomes_project 11 16183280 16326709 - MGP_CASTEiJ_P0027513 Meis1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027514.1 MGP_CASTEiJ_G0017377.1 mouse_genomes_project 11 16183519 16320016 - Meis1 protein_coding processed_transcript MGP_CASTEiJ_T0027515.1 MGP_CASTEiJ_G0017377.1 mouse_genomes_project 11 16184205 16324274 - MGP_CASTEiJ_P0027515 Meis1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027516.1 MGP_CASTEiJ_G0017377.1 mouse_genomes_project 11 16294558 16326917 - Meis1 protein_coding retained_intron MGP_CASTEiJ_T0027517.1 MGP_CASTEiJ_G0017377.1 mouse_genomes_project 11 16317811 16326917 - Meis1 protein_coding retained_intron MGP_CASTEiJ_T0003065.1 MGP_CASTEiJ_G0002856.1 mouse_genomes_project 11 54999187 55315373 + antisense antisense MGP_CASTEiJ_T0031122.1 MGP_CASTEiJ_G0018243.1 mouse_genomes_project 11 91054057 91206252 - MGP_CASTEiJ_P0031122 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031124.1 MGP_CASTEiJ_G0018243.1 mouse_genomes_project 11 91091042 91320819 - MGP_CASTEiJ_P0031124 protein_coding protein_coding MGP_CASTEiJ_T0031125.1 MGP_CASTEiJ_G0018243.1 mouse_genomes_project 11 91091141 91218164 - MGP_CASTEiJ_P0031125 protein_coding protein_coding MGP_CASTEiJ_T0031043.1 MGP_CASTEiJ_G0018222.1 mouse_genomes_project 11 89306108 89325831 - MGP_CASTEiJ_P0031043 Lpo protein_coding protein_coding MGP_CASTEiJ_T0031044.1 MGP_CASTEiJ_G0018222.1 mouse_genomes_project 11 89306430 89317197 - MGP_CASTEiJ_P0031044 Lpo protein_coding unknown_likely_coding MGP_CASTEiJ_T0031045.1 MGP_CASTEiJ_G0018222.1 mouse_genomes_project 11 89316400 89317337 - Lpo protein_coding retained_intron MGP_CASTEiJ_T0031046.1 MGP_CASTEiJ_G0018222.1 mouse_genomes_project 11 89317565 89329671 - MGP_CASTEiJ_P0031046 Lpo protein_coding protein_coding MGP_CASTEiJ_T0033469.1 MGP_CASTEiJ_G0018772.1 mouse_genomes_project 11 122657154 122669289 + MGP_CASTEiJ_P0033469 Engase protein_coding protein_coding MGP_CASTEiJ_T0033470.1 MGP_CASTEiJ_G0018772.1 mouse_genomes_project 11 122657202 122660044 + MGP_CASTEiJ_P0033470 Engase protein_coding unknown_likely_coding MGP_CASTEiJ_T0033471.1 MGP_CASTEiJ_G0018772.1 mouse_genomes_project 11 122657266 122659570 + MGP_CASTEiJ_P0033471 Engase protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033472.1 MGP_CASTEiJ_G0018772.1 mouse_genomes_project 11 122657271 122663146 + MGP_CASTEiJ_P0033472 Engase protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033473.1 MGP_CASTEiJ_G0018772.1 mouse_genomes_project 11 122657285 122669167 + MGP_CASTEiJ_P0033473 Engase protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033474.1 MGP_CASTEiJ_G0018772.1 mouse_genomes_project 11 122657297 122667854 + MGP_CASTEiJ_P0033474 Engase protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033475.1 MGP_CASTEiJ_G0018772.1 mouse_genomes_project 11 122657308 122669289 + MGP_CASTEiJ_P0033475 Engase protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033476.1 MGP_CASTEiJ_G0018772.1 mouse_genomes_project 11 122661196 122663028 + Engase protein_coding retained_intron MGP_CASTEiJ_T0033477.1 MGP_CASTEiJ_G0018772.1 mouse_genomes_project 11 122662470 122667854 + Engase protein_coding retained_intron MGP_CASTEiJ_T0033478.1 MGP_CASTEiJ_G0018772.1 mouse_genomes_project 11 122664570 122667590 + MGP_CASTEiJ_P0033478 Engase protein_coding protein_coding MGP_CASTEiJ_T0006211.1 MGP_CASTEiJ_G0005187.1 mouse_genomes_project 11 122979234 122981681 + Gm11750 lincRNA lincRNA MGP_CASTEiJ_T0031817.1 MGP_CASTEiJ_G0018430.1 mouse_genomes_project 11 102461322 102462674 + MGP_CASTEiJ_P0031817 protein_coding protein_coding MGP_CASTEiJ_T0099269.1 MGP_CASTEiJ_G0036182.1 mouse_genomes_project 11 98047768 98047893 + Gm24725 snRNA snRNA MGP_CASTEiJ_T0101728.1 MGP_CASTEiJ_G0038537.1 mouse_genomes_project 11 74701667 74717551 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101729.1 MGP_CASTEiJ_G0038537.1 mouse_genomes_project 11 74702142 74704092 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0011460.1 MGP_CASTEiJ_G0009646.1 mouse_genomes_project 11 59113126 59114391 + MGP_CASTEiJ_P0011460 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0028148.1 MGP_CASTEiJ_G0017533.1 mouse_genomes_project 11 47841259 47842240 - MGP_CASTEiJ_P0028148 protein_coding protein_coding MGP_CASTEiJ_T0029194.1 MGP_CASTEiJ_G0017789.1 mouse_genomes_project 11 66107136 66431270 - MGP_CASTEiJ_P0029194 Shisa6 protein_coding protein_coding MGP_CASTEiJ_T0029195.1 MGP_CASTEiJ_G0017789.1 mouse_genomes_project 11 66112880 66431439 - MGP_CASTEiJ_P0029195 Shisa6 protein_coding protein_coding MGP_CASTEiJ_T0029196.1 MGP_CASTEiJ_G0017789.1 mouse_genomes_project 11 66287585 66407106 - Shisa6 protein_coding processed_transcript MGP_CASTEiJ_T0030798.1 MGP_CASTEiJ_G0018172.1 mouse_genomes_project 11 85192678 85218698 + MGP_CASTEiJ_P0030798 Ddx52 protein_coding protein_coding MGP_CASTEiJ_T0030799.1 MGP_CASTEiJ_G0018172.1 mouse_genomes_project 11 85198008 85207558 + Ddx52 protein_coding processed_transcript MGP_CASTEiJ_T0027713.1 MGP_CASTEiJ_G0017418.1 mouse_genomes_project 11 26671567 26755306 + MGP_CASTEiJ_P0027713 Efemp1 protein_coding protein_coding MGP_CASTEiJ_T0027714.1 MGP_CASTEiJ_G0017418.1 mouse_genomes_project 11 26671607 26750102 + Efemp1 protein_coding processed_transcript MGP_CASTEiJ_T0027715.1 MGP_CASTEiJ_G0017418.1 mouse_genomes_project 11 26744278 26755306 + MGP_CASTEiJ_P0027715 Efemp1 protein_coding protein_coding MGP_CASTEiJ_T0012239.1 MGP_CASTEiJ_G0010402.1 mouse_genomes_project 11 48424651 48425130 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030856.1 MGP_CASTEiJ_G0018183.1 mouse_genomes_project 11 86187246 86191133 - MGP_CASTEiJ_P0030856 Pigw protein_coding protein_coding MGP_CASTEiJ_T0030857.1 MGP_CASTEiJ_G0018183.1 mouse_genomes_project 11 86187772 86191223 - MGP_CASTEiJ_P0030857 Pigw protein_coding protein_coding MGP_CASTEiJ_T0032844.1 MGP_CASTEiJ_G0018650.1 mouse_genomes_project 11 114439728 114506572 + MGP_CASTEiJ_P0032844 Kcnj16 protein_coding protein_coding MGP_CASTEiJ_T0032845.1 MGP_CASTEiJ_G0018650.1 mouse_genomes_project 11 114439728 114505356 + MGP_CASTEiJ_P0032845 Kcnj16 protein_coding protein_coding MGP_CASTEiJ_T0032846.1 MGP_CASTEiJ_G0018650.1 mouse_genomes_project 11 114439759 114502389 + MGP_CASTEiJ_P0032846 Kcnj16 protein_coding protein_coding MGP_CASTEiJ_T0032847.1 MGP_CASTEiJ_G0018650.1 mouse_genomes_project 11 114473283 114505351 + MGP_CASTEiJ_P0032847 Kcnj16 protein_coding protein_coding MGP_CASTEiJ_T0032848.1 MGP_CASTEiJ_G0018650.1 mouse_genomes_project 11 114501425 114505393 + MGP_CASTEiJ_P0032848 Kcnj16 protein_coding protein_coding MGP_CASTEiJ_T0032849.1 MGP_CASTEiJ_G0018650.1 mouse_genomes_project 11 114501425 114502278 + MGP_CASTEiJ_P0032849 Kcnj16 protein_coding protein_coding MGP_CASTEiJ_T0003112.1 MGP_CASTEiJ_G0002895.1 mouse_genomes_project 11 69781918 69792262 + Tnfsf13os antisense antisense MGP_CASTEiJ_T0003113.1 MGP_CASTEiJ_G0002895.1 mouse_genomes_project 11 69784107 69792639 + Tnfsf13os antisense antisense MGP_CASTEiJ_T0003114.1 MGP_CASTEiJ_G0002895.1 mouse_genomes_project 11 69784279 69792639 + Tnfsf13os antisense antisense MGP_CASTEiJ_T0028140.1 MGP_CASTEiJ_G0017529.1 mouse_genomes_project 11 47751162 47759461 + MGP_CASTEiJ_P0028140 protein_coding protein_coding MGP_CASTEiJ_T0028141.1 MGP_CASTEiJ_G0017529.1 mouse_genomes_project 11 47754764 47761622 + MGP_CASTEiJ_P0028141 protein_coding protein_coding MGP_CASTEiJ_T0032012.1 MGP_CASTEiJ_G0018489.1 mouse_genomes_project 11 103882178 103890467 - MGP_CASTEiJ_P0032012 Plekhh3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032013.1 MGP_CASTEiJ_G0018489.1 mouse_genomes_project 11 103882178 103890863 - MGP_CASTEiJ_P0032013 Plekhh3 protein_coding protein_coding MGP_CASTEiJ_T0032014.1 MGP_CASTEiJ_G0018489.1 mouse_genomes_project 11 103882178 103885106 - MGP_CASTEiJ_P0032014 Plekhh3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032015.1 MGP_CASTEiJ_G0018489.1 mouse_genomes_project 11 103882181 103890829 - MGP_CASTEiJ_P0032015 Plekhh3 protein_coding protein_coding MGP_CASTEiJ_T0032016.1 MGP_CASTEiJ_G0018489.1 mouse_genomes_project 11 103882309 103890466 - MGP_CASTEiJ_P0032016 Plekhh3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032017.1 MGP_CASTEiJ_G0018489.1 mouse_genomes_project 11 103883653 103884810 - Plekhh3 protein_coding processed_transcript MGP_CASTEiJ_T0032018.1 MGP_CASTEiJ_G0018489.1 mouse_genomes_project 11 103886980 103889866 - MGP_CASTEiJ_P0032018 Plekhh3 protein_coding protein_coding MGP_CASTEiJ_T0031129.1 MGP_CASTEiJ_G0018247.1 mouse_genomes_project 11 91878605 91944438 + Mmd protein_coding processed_transcript MGP_CASTEiJ_T0031130.1 MGP_CASTEiJ_G0018247.1 mouse_genomes_project 11 91878605 91946796 + Mmd protein_coding processed_transcript MGP_CASTEiJ_T0031131.1 MGP_CASTEiJ_G0018247.1 mouse_genomes_project 11 91878607 91923579 + Mmd protein_coding processed_transcript MGP_CASTEiJ_T0031132.1 MGP_CASTEiJ_G0018247.1 mouse_genomes_project 11 91944997 91963923 + MGP_CASTEiJ_P0031132 Mmd protein_coding protein_coding MGP_CASTEiJ_T0031133.1 MGP_CASTEiJ_G0018247.1 mouse_genomes_project 11 91945017 91975487 + MGP_CASTEiJ_P0031133 Mmd protein_coding protein_coding MGP_CASTEiJ_T0029532.1 MGP_CASTEiJ_G0017871.1 mouse_genomes_project 11 69997922 69999262 - MGP_CASTEiJ_P0029532 Tmem95 protein_coding protein_coding MGP_CASTEiJ_T0100465.1 MGP_CASTEiJ_G0037378.1 mouse_genomes_project 11 84463501 84463598 + Snord7 snoRNA snoRNA MGP_CASTEiJ_T0027476.1 MGP_CASTEiJ_G0017367.1 mouse_genomes_project 11 13805371 13813285 - MGP_CASTEiJ_P0027476 Sec61g protein_coding protein_coding MGP_CASTEiJ_T0027477.1 MGP_CASTEiJ_G0017367.1 mouse_genomes_project 11 13806225 13812979 - MGP_CASTEiJ_P0027477 Sec61g protein_coding protein_coding MGP_CASTEiJ_T0027478.1 MGP_CASTEiJ_G0017367.1 mouse_genomes_project 11 13806475 13813285 - MGP_CASTEiJ_P0027478 Sec61g protein_coding protein_coding MGP_CASTEiJ_T0027479.1 MGP_CASTEiJ_G0017367.1 mouse_genomes_project 11 13806475 13813285 - MGP_CASTEiJ_P0027479 Sec61g protein_coding protein_coding MGP_CASTEiJ_T0027480.1 MGP_CASTEiJ_G0017367.1 mouse_genomes_project 11 13806480 13809853 - Sec61g protein_coding retained_intron MGP_CASTEiJ_T0027481.1 MGP_CASTEiJ_G0017367.1 mouse_genomes_project 11 13806488 13812882 - MGP_CASTEiJ_P0027481 Sec61g protein_coding protein_coding MGP_CASTEiJ_T0027482.1 MGP_CASTEiJ_G0017367.1 mouse_genomes_project 11 13810902 13812945 - Sec61g protein_coding retained_intron MGP_CASTEiJ_T0033903.1 MGP_CASTEiJ_G0018852.1 mouse_genomes_project 11 125831232 126000355 + MGP_CASTEiJ_P0033903 Tbcd protein_coding protein_coding MGP_CASTEiJ_T0033904.1 MGP_CASTEiJ_G0018852.1 mouse_genomes_project 11 125867557 125876210 + MGP_CASTEiJ_P0033904 Tbcd protein_coding protein_coding MGP_CASTEiJ_T0033905.1 MGP_CASTEiJ_G0018852.1 mouse_genomes_project 11 125879192 125957780 + MGP_CASTEiJ_P0033905 Tbcd protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033907.1 MGP_CASTEiJ_G0018852.1 mouse_genomes_project 11 125927385 125974236 + Tbcd protein_coding processed_transcript MGP_CASTEiJ_T0033908.1 MGP_CASTEiJ_G0018852.1 mouse_genomes_project 11 125933216 125974213 + Tbcd protein_coding retained_intron MGP_CASTEiJ_T0033909.1 MGP_CASTEiJ_G0018852.1 mouse_genomes_project 11 125982168 126000354 + Tbcd protein_coding retained_intron MGP_CASTEiJ_T0033910.1 MGP_CASTEiJ_G0018852.1 mouse_genomes_project 11 125985528 126000354 + Tbcd protein_coding processed_transcript MGP_CASTEiJ_T0033911.1 MGP_CASTEiJ_G0018852.1 mouse_genomes_project 11 125985614 126000354 + Tbcd protein_coding processed_transcript MGP_CASTEiJ_T0009522.1 MGP_CASTEiJ_G0007710.1 mouse_genomes_project 11 123372904 123372966 - Mir6934 miRNA miRNA MGP_CASTEiJ_T0028649.1 MGP_CASTEiJ_G0017659.1 mouse_genomes_project 11 57441466 57459414 + MGP_CASTEiJ_P0028649 Cnot8 protein_coding protein_coding MGP_CASTEiJ_T0028650.1 MGP_CASTEiJ_G0017659.1 mouse_genomes_project 11 57441542 57459414 + MGP_CASTEiJ_P0028650 Cnot8 protein_coding protein_coding MGP_CASTEiJ_T0028651.1 MGP_CASTEiJ_G0017659.1 mouse_genomes_project 11 57441679 57452190 + MGP_CASTEiJ_P0028651 Cnot8 protein_coding protein_coding MGP_CASTEiJ_T0028652.1 MGP_CASTEiJ_G0017659.1 mouse_genomes_project 11 57454845 57458078 + Cnot8 protein_coding processed_transcript MGP_CASTEiJ_T0027789.1 MGP_CASTEiJ_G0017431.1 mouse_genomes_project 11 28323512 28365129 - MGP_CASTEiJ_P0027789 4930505A04Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027790.1 MGP_CASTEiJ_G0017431.1 mouse_genomes_project 11 28323512 28365110 - MGP_CASTEiJ_P0027790 4930505A04Rik protein_coding protein_coding MGP_CASTEiJ_T0030244.1 MGP_CASTEiJ_G0018038.1 mouse_genomes_project 11 76820041 76821111 + MGP_CASTEiJ_P0030244 Dbil5 protein_coding protein_coding MGP_CASTEiJ_T0098817.1 MGP_CASTEiJ_G0035747.1 mouse_genomes_project 11 71095904 71104975 + Gm19967 sense_intronic sense_intronic MGP_CASTEiJ_T0099273.1 MGP_CASTEiJ_G0036186.1 mouse_genomes_project 11 101372108 101372212 - Gm23640 snRNA snRNA MGP_CASTEiJ_T0032803.1 MGP_CASTEiJ_G0018641.1 mouse_genomes_project 11 113016130 113020691 + Prkar1a protein_coding processed_transcript MGP_CASTEiJ_T0032804.1 MGP_CASTEiJ_G0018641.1 mouse_genomes_project 11 113016130 113036361 + MGP_CASTEiJ_P0032804 Prkar1a protein_coding protein_coding MGP_CASTEiJ_T0032805.1 MGP_CASTEiJ_G0018641.1 mouse_genomes_project 11 113017299 113028501 + MGP_CASTEiJ_P0032805 Prkar1a protein_coding protein_coding MGP_CASTEiJ_T0032806.1 MGP_CASTEiJ_G0018641.1 mouse_genomes_project 11 113017645 113036361 + MGP_CASTEiJ_P0032806 Prkar1a protein_coding protein_coding MGP_CASTEiJ_T0032807.1 MGP_CASTEiJ_G0018641.1 mouse_genomes_project 11 113032656 113033688 + Prkar1a protein_coding processed_transcript MGP_CASTEiJ_T0029066.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62006015 62152147 - MGP_CASTEiJ_P0029066 Ncor1 protein_coding protein_coding MGP_CASTEiJ_T0029067.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62006015 62133821 - MGP_CASTEiJ_P0029067 Ncor1 protein_coding protein_coding MGP_CASTEiJ_T0029068.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62006266 62072175 - MGP_CASTEiJ_P0029068 Ncor1 protein_coding protein_coding MGP_CASTEiJ_T0029069.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62007167 62010568 - MGP_CASTEiJ_P0029069 Ncor1 protein_coding protein_coding MGP_CASTEiJ_T0029070.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62007364 62049097 - MGP_CASTEiJ_P0029070 Ncor1 protein_coding protein_coding MGP_CASTEiJ_T0029071.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62007364 62133787 - MGP_CASTEiJ_P0029071 Ncor1 protein_coding protein_coding MGP_CASTEiJ_T0029072.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62007364 62049868 - MGP_CASTEiJ_P0029072 Ncor1 protein_coding protein_coding MGP_CASTEiJ_T0029073.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62014591 62019365 - Ncor1 protein_coding retained_intron MGP_CASTEiJ_T0029074.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62014841 62019489 - Ncor1 protein_coding retained_intron MGP_CASTEiJ_T0029075.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62016464 62020261 - Ncor1 protein_coding retained_intron MGP_CASTEiJ_T0029076.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62029790 62033645 - Ncor1 protein_coding retained_intron MGP_CASTEiJ_T0029077.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62032358 62040115 - Ncor1 protein_coding processed_transcript MGP_CASTEiJ_T0029078.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62033528 62086065 - MGP_CASTEiJ_P0029078 Ncor1 protein_coding protein_coding MGP_CASTEiJ_T0029079.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62042634 62061407 - Ncor1 protein_coding processed_transcript MGP_CASTEiJ_T0029080.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62056953 62133821 - Ncor1 protein_coding retained_intron MGP_CASTEiJ_T0029081.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62065312 62076881 - MGP_CASTEiJ_P0029081 Ncor1 protein_coding protein_coding MGP_CASTEiJ_T0029082.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62065357 62078572 - MGP_CASTEiJ_P0029082 Ncor1 protein_coding protein_coding MGP_CASTEiJ_T0029083.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62065377 62077030 - MGP_CASTEiJ_P0029083 Ncor1 protein_coding protein_coding MGP_CASTEiJ_T0029084.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62065379 62152621 - MGP_CASTEiJ_P0029084 Ncor1 protein_coding protein_coding MGP_CASTEiJ_T0029085.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62069562 62076939 - Ncor1 protein_coding retained_intron MGP_CASTEiJ_T0029086.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62078485 62133821 - MGP_CASTEiJ_P0029086 Ncor1 protein_coding protein_coding MGP_CASTEiJ_T0029087.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62085455 62089788 - Ncor1 protein_coding retained_intron MGP_CASTEiJ_T0029088.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62089781 62096168 - Ncor1 protein_coding retained_intron MGP_CASTEiJ_T0029089.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62096000 62152138 - MGP_CASTEiJ_P0029089 Ncor1 protein_coding protein_coding MGP_CASTEiJ_T0029090.1 MGP_CASTEiJ_G0017763.1 mouse_genomes_project 11 62113843 62153356 - MGP_CASTEiJ_P0029090 Ncor1 protein_coding protein_coding MGP_CASTEiJ_T0003060.1 MGP_CASTEiJ_G0002851.1 mouse_genomes_project 11 53880778 53886301 + Gm12227 antisense antisense MGP_CASTEiJ_T0031418.1 MGP_CASTEiJ_G0018316.1 mouse_genomes_project 11 98517958 98521079 + Hoxb2 protein_coding retained_intron MGP_CASTEiJ_T0031419.1 MGP_CASTEiJ_G0018316.1 mouse_genomes_project 11 98519060 98521433 + MGP_CASTEiJ_P0031419 Hoxb2 protein_coding protein_coding MGP_CASTEiJ_T0003039.1 MGP_CASTEiJ_G0002832.1 mouse_genomes_project 11 41681198 41731059 - Gm12147 antisense antisense MGP_CASTEiJ_T0028002.1 MGP_CASTEiJ_G0017489.1 mouse_genomes_project 11 41847500 41855258 - MGP_CASTEiJ_P0028002 Pttg1 protein_coding protein_coding MGP_CASTEiJ_T0028003.1 MGP_CASTEiJ_G0017489.1 mouse_genomes_project 11 41847504 41852065 - MGP_CASTEiJ_P0028003 Pttg1 protein_coding protein_coding MGP_CASTEiJ_T0028004.1 MGP_CASTEiJ_G0017489.1 mouse_genomes_project 11 41847517 41855020 - MGP_CASTEiJ_P0028004 Pttg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028005.1 MGP_CASTEiJ_G0017489.1 mouse_genomes_project 11 41848274 41855266 - MGP_CASTEiJ_P0028005 Pttg1 protein_coding protein_coding MGP_CASTEiJ_T0028006.1 MGP_CASTEiJ_G0017489.1 mouse_genomes_project 11 41851993 41855157 - Pttg1 protein_coding processed_transcript MGP_CASTEiJ_T0028007.1 MGP_CASTEiJ_G0017489.1 mouse_genomes_project 11 41853673 41855252 - Pttg1 protein_coding retained_intron MGP_CASTEiJ_T0030159.1 MGP_CASTEiJ_G0018021.1 mouse_genomes_project 11 76036270 76060290 + MGP_CASTEiJ_P0030159 Prpf8 protein_coding protein_coding MGP_CASTEiJ_T0030160.1 MGP_CASTEiJ_G0018021.1 mouse_genomes_project 11 76036274 76060292 + MGP_CASTEiJ_P0030160 Prpf8 protein_coding protein_coding MGP_CASTEiJ_T0030161.1 MGP_CASTEiJ_G0018021.1 mouse_genomes_project 11 76036309 76045298 + MGP_CASTEiJ_P0030161 Prpf8 protein_coding protein_coding MGP_CASTEiJ_T0030162.1 MGP_CASTEiJ_G0018021.1 mouse_genomes_project 11 76041711 76043393 + Prpf8 protein_coding retained_intron MGP_CASTEiJ_T0009441.1 MGP_CASTEiJ_G0007629.1 mouse_genomes_project 11 60297064 60297128 + Mir5100 miRNA miRNA MGP_CASTEiJ_T0101997.1 MGP_CASTEiJ_G0038722.1 mouse_genomes_project 11 84375596 84424836 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0030775.1 MGP_CASTEiJ_G0018161.1 mouse_genomes_project 11 84707302 84711972 - MGP_CASTEiJ_P0030775 Ccl5 protein_coding protein_coding MGP_CASTEiJ_T0030776.1 MGP_CASTEiJ_G0018161.1 mouse_genomes_project 11 84710161 84711967 - Ccl5 protein_coding retained_intron MGP_CASTEiJ_T0031554.1 MGP_CASTEiJ_G0018345.1 mouse_genomes_project 11 99979037 99983862 - MGP_CASTEiJ_P0031554 Pcgf2 protein_coding protein_coding MGP_CASTEiJ_T0031555.1 MGP_CASTEiJ_G0018345.1 mouse_genomes_project 11 99979037 99989226 - MGP_CASTEiJ_P0031555 Pcgf2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031556.1 MGP_CASTEiJ_G0018345.1 mouse_genomes_project 11 99979043 99989243 - MGP_CASTEiJ_P0031556 Pcgf2 protein_coding protein_coding MGP_CASTEiJ_T0031557.1 MGP_CASTEiJ_G0018345.1 mouse_genomes_project 11 99979689 99989426 - MGP_CASTEiJ_P0031557 Pcgf2 protein_coding protein_coding MGP_CASTEiJ_T0031558.1 MGP_CASTEiJ_G0018345.1 mouse_genomes_project 11 99979689 99990225 - MGP_CASTEiJ_P0031558 Pcgf2 protein_coding protein_coding MGP_CASTEiJ_T0031559.1 MGP_CASTEiJ_G0018345.1 mouse_genomes_project 11 99980397 99982283 - Pcgf2 protein_coding processed_transcript MGP_CASTEiJ_T0031560.1 MGP_CASTEiJ_G0018345.1 mouse_genomes_project 11 99987055 99989426 - Pcgf2 protein_coding processed_transcript MGP_CASTEiJ_T0029912.1 MGP_CASTEiJ_G0017943.1 mouse_genomes_project 11 72663959 72672904 + MGP_CASTEiJ_P0029912 Xaf1 protein_coding protein_coding MGP_CASTEiJ_T0029913.1 MGP_CASTEiJ_G0017943.1 mouse_genomes_project 11 72663960 72677319 + MGP_CASTEiJ_P0029913 Xaf1 protein_coding protein_coding MGP_CASTEiJ_T0029914.1 MGP_CASTEiJ_G0017943.1 mouse_genomes_project 11 72663969 72675804 + MGP_CASTEiJ_P0029914 Xaf1 protein_coding protein_coding MGP_CASTEiJ_T0029915.1 MGP_CASTEiJ_G0017943.1 mouse_genomes_project 11 72663993 72672584 + MGP_CASTEiJ_P0029915 Xaf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029916.1 MGP_CASTEiJ_G0017943.1 mouse_genomes_project 11 72663995 72672603 + Xaf1 protein_coding retained_intron MGP_CASTEiJ_T0032105.1 MGP_CASTEiJ_G0018509.1 mouse_genomes_project 11 104202312 104209947 - MGP_CASTEiJ_P0032105 Vat1 protein_coding protein_coding MGP_CASTEiJ_T0033416.1 MGP_CASTEiJ_G0018759.1 mouse_genomes_project 11 121982464 121988872 + MGP_CASTEiJ_P0033416 Birc5 protein_coding protein_coding MGP_CASTEiJ_T0033417.1 MGP_CASTEiJ_G0018759.1 mouse_genomes_project 11 121982532 121988883 + MGP_CASTEiJ_P0033417 Birc5 protein_coding protein_coding MGP_CASTEiJ_T0030048.1 MGP_CASTEiJ_G0017995.1 mouse_genomes_project 11 74668268 74764186 + MGP_CASTEiJ_P0030048 protein_coding protein_coding MGP_CASTEiJ_T0030050.1 MGP_CASTEiJ_G0017995.1 mouse_genomes_project 11 74707856 74764022 + MGP_CASTEiJ_P0030050 protein_coding protein_coding MGP_CASTEiJ_T0030051.1 MGP_CASTEiJ_G0017995.1 mouse_genomes_project 11 74707871 74764473 + MGP_CASTEiJ_P0030051 protein_coding protein_coding MGP_CASTEiJ_T0030052.1 MGP_CASTEiJ_G0017995.1 mouse_genomes_project 11 74707895 74764021 + MGP_CASTEiJ_P0030052 protein_coding protein_coding MGP_CASTEiJ_T0003036.1 MGP_CASTEiJ_G0002829.1 mouse_genomes_project 11 34364400 34366323 + antisense antisense MGP_CASTEiJ_T0031765.1 MGP_CASTEiJ_G0018391.1 mouse_genomes_project 11 101584922 101608810 - MGP_CASTEiJ_P0031765 Tns4 protein_coding protein_coding MGP_CASTEiJ_T0031766.1 MGP_CASTEiJ_G0018391.1 mouse_genomes_project 11 101587401 101593376 - Tns4 protein_coding processed_transcript MGP_CASTEiJ_T0031767.1 MGP_CASTEiJ_G0018391.1 mouse_genomes_project 11 101590186 101594854 - Tns4 protein_coding retained_intron MGP_CASTEiJ_T0031768.1 MGP_CASTEiJ_G0018391.1 mouse_genomes_project 11 101604984 101608789 - Tns4 protein_coding retained_intron MGP_CASTEiJ_T0003262.1 MGP_CASTEiJ_G0003013.1 mouse_genomes_project 11 126223868 126224525 - Gm15643 antisense antisense MGP_CASTEiJ_T0009497.1 MGP_CASTEiJ_G0007685.1 mouse_genomes_project 11 100575576 100575654 + Gm27399 miRNA miRNA MGP_CASTEiJ_T0028435.1 MGP_CASTEiJ_G0017605.1 mouse_genomes_project 11 52419881 52495631 + MGP_CASTEiJ_P0028435 Aff4 protein_coding protein_coding MGP_CASTEiJ_T0028436.1 MGP_CASTEiJ_G0017605.1 mouse_genomes_project 11 52438099 52443473 + MGP_CASTEiJ_P0028436 Aff4 protein_coding protein_coding MGP_CASTEiJ_T0028437.1 MGP_CASTEiJ_G0017605.1 mouse_genomes_project 11 52438656 52447788 + Aff4 protein_coding retained_intron MGP_CASTEiJ_T0028438.1 MGP_CASTEiJ_G0017605.1 mouse_genomes_project 11 52443918 52472228 + MGP_CASTEiJ_P0028438 Aff4 protein_coding protein_coding MGP_CASTEiJ_T0028439.1 MGP_CASTEiJ_G0017605.1 mouse_genomes_project 11 52443926 52473176 + Aff4 protein_coding processed_transcript MGP_CASTEiJ_T0028440.1 MGP_CASTEiJ_G0017605.1 mouse_genomes_project 11 52478023 52482974 + Aff4 protein_coding retained_intron MGP_CASTEiJ_T0028441.1 MGP_CASTEiJ_G0017605.1 mouse_genomes_project 11 52484483 52489634 + Aff4 protein_coding retained_intron MGP_CASTEiJ_T0003233.1 MGP_CASTEiJ_G0002991.1 mouse_genomes_project 11 119896228 119901911 - Sap30bpos antisense antisense MGP_CASTEiJ_T0027667.1 MGP_CASTEiJ_G0017408.1 mouse_genomes_project 11 21316083 21356319 - MGP_CASTEiJ_P0027667 Rel protein_coding unknown_likely_coding MGP_CASTEiJ_T0027668.1 MGP_CASTEiJ_G0017408.1 mouse_genomes_project 11 21316087 21356107 - MGP_CASTEiJ_P0027668 Rel protein_coding protein_coding MGP_CASTEiJ_T0012130.1 MGP_CASTEiJ_G0010293.1 mouse_genomes_project 11 3897682 3898440 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032119.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104301645 104330615 + MGP_CASTEiJ_P0032119 Nbr1 protein_coding protein_coding MGP_CASTEiJ_T0032120.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104301665 104308789 + MGP_CASTEiJ_P0032120 Nbr1 protein_coding protein_coding MGP_CASTEiJ_T0032121.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104302289 104330616 + MGP_CASTEiJ_P0032121 Nbr1 protein_coding protein_coding MGP_CASTEiJ_T0032122.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104302289 104330616 + MGP_CASTEiJ_P0032122 Nbr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032123.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104302298 104317377 + Nbr1 protein_coding processed_transcript MGP_CASTEiJ_T0032124.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104302313 104330616 + MGP_CASTEiJ_P0032124 Nbr1 protein_coding protein_coding MGP_CASTEiJ_T0032125.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104302332 104308788 + MGP_CASTEiJ_P0032125 Nbr1 protein_coding protein_coding MGP_CASTEiJ_T0032126.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104302366 104329461 + MGP_CASTEiJ_P0032126 Nbr1 protein_coding protein_coding MGP_CASTEiJ_T0032127.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104305313 104308805 + MGP_CASTEiJ_P0032127 Nbr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032128.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104305619 104329674 + MGP_CASTEiJ_P0032128 Nbr1 protein_coding protein_coding MGP_CASTEiJ_T0032129.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104308761 104308824 + Nbr1 protein_coding misc_RNA MGP_CASTEiJ_T0032130.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104311021 104315045 + Nbr1 protein_coding retained_intron MGP_CASTEiJ_T0032131.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104315297 104317283 + Nbr1 protein_coding retained_intron MGP_CASTEiJ_T0032132.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104317134 104318240 + Nbr1 protein_coding retained_intron MGP_CASTEiJ_T0032133.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104317523 104318249 + Nbr1 protein_coding processed_transcript MGP_CASTEiJ_T0032134.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104321059 104324052 + Nbr1 protein_coding retained_intron MGP_CASTEiJ_T0032135.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104323942 104325457 + Nbr1 protein_coding retained_intron MGP_CASTEiJ_T0032136.1 MGP_CASTEiJ_G0018512.1 mouse_genomes_project 11 104326649 104329450 + Nbr1 protein_coding retained_intron MGP_CASTEiJ_T0031269.1 MGP_CASTEiJ_G0018272.1 mouse_genomes_project 11 96486608 96490686 + MGP_CASTEiJ_P0031269 Chad protein_coding protein_coding MGP_CASTEiJ_T0032011.1 MGP_CASTEiJ_G0018488.1 mouse_genomes_project 11 103873784 103881275 + MGP_CASTEiJ_P0032011 Tubg2 protein_coding protein_coding MGP_CASTEiJ_T0016444.1 MGP_CASTEiJ_G0014475.1 mouse_genomes_project 11 21130206 21130978 - Gm12060 processed_transcript processed_transcript MGP_CASTEiJ_T0031231.1 MGP_CASTEiJ_G0018266.1 mouse_genomes_project 11 96314966 96390133 - MGP_CASTEiJ_P0031231 Cacna1g protein_coding protein_coding MGP_CASTEiJ_T0031232.1 MGP_CASTEiJ_G0018266.1 mouse_genomes_project 11 96314966 96390133 - MGP_CASTEiJ_P0031232 Cacna1g protein_coding protein_coding MGP_CASTEiJ_T0031233.1 MGP_CASTEiJ_G0018266.1 mouse_genomes_project 11 96314966 96390133 - MGP_CASTEiJ_P0031233 Cacna1g protein_coding protein_coding MGP_CASTEiJ_T0031234.1 MGP_CASTEiJ_G0018266.1 mouse_genomes_project 11 96314966 96390133 - MGP_CASTEiJ_P0031234 Cacna1g protein_coding protein_coding MGP_CASTEiJ_T0031235.1 MGP_CASTEiJ_G0018266.1 mouse_genomes_project 11 96314966 96390133 - MGP_CASTEiJ_P0031235 Cacna1g protein_coding protein_coding MGP_CASTEiJ_T0031236.1 MGP_CASTEiJ_G0018266.1 mouse_genomes_project 11 96314966 96390133 - MGP_CASTEiJ_P0031236 Cacna1g protein_coding protein_coding MGP_CASTEiJ_T0031237.1 MGP_CASTEiJ_G0018266.1 mouse_genomes_project 11 96314966 96390133 - MGP_CASTEiJ_P0031237 Cacna1g protein_coding protein_coding MGP_CASTEiJ_T0031238.1 MGP_CASTEiJ_G0018266.1 mouse_genomes_project 11 96314966 96390133 - MGP_CASTEiJ_P0031238 Cacna1g protein_coding protein_coding MGP_CASTEiJ_T0031239.1 MGP_CASTEiJ_G0018266.1 mouse_genomes_project 11 96314966 96390133 - MGP_CASTEiJ_P0031239 Cacna1g protein_coding protein_coding MGP_CASTEiJ_T0031240.1 MGP_CASTEiJ_G0018266.1 mouse_genomes_project 11 96314981 96390156 - MGP_CASTEiJ_P0031240 Cacna1g protein_coding protein_coding MGP_CASTEiJ_T0031241.1 MGP_CASTEiJ_G0018266.1 mouse_genomes_project 11 96315211 96390133 - MGP_CASTEiJ_P0031241 Cacna1g protein_coding protein_coding MGP_CASTEiJ_T0031242.1 MGP_CASTEiJ_G0018266.1 mouse_genomes_project 11 96316428 96318257 - Cacna1g protein_coding processed_transcript MGP_CASTEiJ_T0031243.1 MGP_CASTEiJ_G0018266.1 mouse_genomes_project 11 96318061 96323770 - Cacna1g protein_coding processed_transcript MGP_CASTEiJ_T0031244.1 MGP_CASTEiJ_G0018266.1 mouse_genomes_project 11 96325408 96330897 - Cacna1g protein_coding processed_transcript MGP_CASTEiJ_T0031245.1 MGP_CASTEiJ_G0018266.1 mouse_genomes_project 11 96333190 96334412 - Cacna1g protein_coding processed_transcript MGP_CASTEiJ_T0031246.1 MGP_CASTEiJ_G0018266.1 mouse_genomes_project 11 96334907 96389674 - Cacna1g protein_coding processed_transcript MGP_CASTEiJ_T0003170.1 MGP_CASTEiJ_G0002939.1 mouse_genomes_project 11 99398260 99398946 + Gm11583 antisense antisense MGP_CASTEiJ_T0028078.1 MGP_CASTEiJ_G0017509.1 mouse_genomes_project 11 44825954 44830281 + MGP_CASTEiJ_P0028078 Fndc9 protein_coding protein_coding MGP_CASTEiJ_T0012345.1 MGP_CASTEiJ_G0010508.1 mouse_genomes_project 11 87564268 87564581 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006009.1 MGP_CASTEiJ_G0005030.1 mouse_genomes_project 11 11318503 11453961 - lincRNA lincRNA MGP_CASTEiJ_T0031573.1 MGP_CASTEiJ_G0018350.1 mouse_genomes_project 11 100078231 100083334 - MGP_CASTEiJ_P0031573 Rpl23 protein_coding protein_coding MGP_CASTEiJ_T0031574.1 MGP_CASTEiJ_G0018350.1 mouse_genomes_project 11 100078742 100083173 - Rpl23 protein_coding processed_transcript MGP_CASTEiJ_T0031575.1 MGP_CASTEiJ_G0018350.1 mouse_genomes_project 11 100078760 100079551 - Rpl23 protein_coding processed_transcript MGP_CASTEiJ_T0031576.1 MGP_CASTEiJ_G0018350.1 mouse_genomes_project 11 100082258 100083259 - Rpl23 protein_coding processed_transcript MGP_CASTEiJ_T0031577.1 MGP_CASTEiJ_G0018350.1 mouse_genomes_project 11 100082300 100083279 - MGP_CASTEiJ_P0031577 Rpl23 protein_coding protein_coding MGP_CASTEiJ_T0006010.1 MGP_CASTEiJ_G0005031.1 mouse_genomes_project 11 11848214 11891542 - 1700046C09Rik lincRNA lincRNA MGP_CASTEiJ_T0027704.1 MGP_CASTEiJ_G0017415.1 mouse_genomes_project 11 24281814 24282418 + MGP_CASTEiJ_P0027704 Gm6899 protein_coding protein_coding MGP_CASTEiJ_T0031597.1 MGP_CASTEiJ_G0018353.1 mouse_genomes_project 11 100159769 100161501 - Fbxo47 protein_coding retained_intron MGP_CASTEiJ_T0031598.1 MGP_CASTEiJ_G0018353.1 mouse_genomes_project 11 100159769 100197344 - MGP_CASTEiJ_P0031598 Fbxo47 protein_coding protein_coding MGP_CASTEiJ_T0009520.1 MGP_CASTEiJ_G0007708.1 mouse_genomes_project 11 122147269 122147350 + Mir6933 miRNA miRNA MGP_CASTEiJ_T0031488.1 MGP_CASTEiJ_G0018331.1 mouse_genomes_project 11 99283794 99303298 + MGP_CASTEiJ_P0031488 Osbpl7 protein_coding protein_coding MGP_CASTEiJ_T0031489.1 MGP_CASTEiJ_G0018331.1 mouse_genomes_project 11 99283986 99285988 + Osbpl7 protein_coding processed_transcript MGP_CASTEiJ_T0031490.1 MGP_CASTEiJ_G0018331.1 mouse_genomes_project 11 99283986 99303298 + MGP_CASTEiJ_P0031490 Osbpl7 protein_coding protein_coding MGP_CASTEiJ_T0031491.1 MGP_CASTEiJ_G0018331.1 mouse_genomes_project 11 99285490 99286140 + Osbpl7 protein_coding retained_intron MGP_CASTEiJ_T0031492.1 MGP_CASTEiJ_G0018331.1 mouse_genomes_project 11 99286369 99290084 + Osbpl7 protein_coding retained_intron MGP_CASTEiJ_T0031493.1 MGP_CASTEiJ_G0018331.1 mouse_genomes_project 11 99301276 99302665 + Osbpl7 protein_coding retained_intron MGP_CASTEiJ_T0033632.1 MGP_CASTEiJ_G0018799.1 mouse_genomes_project 11 124667047 124673708 + MGP_CASTEiJ_P0033632 Fscn2 protein_coding protein_coding MGP_CASTEiJ_T0033633.1 MGP_CASTEiJ_G0018799.1 mouse_genomes_project 11 124672077 124673488 + Fscn2 protein_coding processed_transcript MGP_CASTEiJ_T0033634.1 MGP_CASTEiJ_G0018799.1 mouse_genomes_project 11 124672251 124673359 + Fscn2 protein_coding processed_transcript MGP_CASTEiJ_T0031409.1 MGP_CASTEiJ_G0018312.1 mouse_genomes_project 11 98456503 98465592 + MGP_CASTEiJ_P0031409 Hoxb6 protein_coding protein_coding MGP_CASTEiJ_T0031410.1 MGP_CASTEiJ_G0018312.1 mouse_genomes_project 11 98463160 98465591 + MGP_CASTEiJ_P0031410 Hoxb6 protein_coding protein_coding MGP_CASTEiJ_T0100471.1 MGP_CASTEiJ_G0037384.1 mouse_genomes_project 11 100082535 100082672 - Snora21 snoRNA snoRNA MGP_CASTEiJ_T0099038.1 MGP_CASTEiJ_G0035955.1 mouse_genomes_project 11 100625214 100627248 + Gm20644 sense_overlapping sense_overlapping MGP_CASTEiJ_T0029412.1 MGP_CASTEiJ_G0017839.1 mouse_genomes_project 11 69457778 69461307 - MGP_CASTEiJ_P0029412 protein_coding protein_coding MGP_CASTEiJ_T0012144.1 MGP_CASTEiJ_G0010307.1 mouse_genomes_project 11 12360578 12361678 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006121.1 MGP_CASTEiJ_G0005125.1 mouse_genomes_project 11 80569415 80570206 + Gm11205 lincRNA lincRNA MGP_CASTEiJ_T0031349.1 MGP_CASTEiJ_G0018292.1 mouse_genomes_project 11 97506721 97565933 + MGP_CASTEiJ_P0031349 Spop protein_coding protein_coding MGP_CASTEiJ_T0031350.1 MGP_CASTEiJ_G0018292.1 mouse_genomes_project 11 97506721 97587981 + MGP_CASTEiJ_P0031350 Spop protein_coding protein_coding MGP_CASTEiJ_T0031351.1 MGP_CASTEiJ_G0018292.1 mouse_genomes_project 11 97506797 97565954 + MGP_CASTEiJ_P0031351 Spop protein_coding protein_coding MGP_CASTEiJ_T0031352.1 MGP_CASTEiJ_G0018292.1 mouse_genomes_project 11 97506892 97587981 + MGP_CASTEiJ_P0031352 Spop protein_coding protein_coding MGP_CASTEiJ_T0031353.1 MGP_CASTEiJ_G0018292.1 mouse_genomes_project 11 97565937 97583497 + Spop protein_coding processed_transcript MGP_CASTEiJ_T0098457.1 MGP_CASTEiJ_G0035388.1 mouse_genomes_project 11 24782999 24783081 + n-R5s68 rRNA rRNA MGP_CASTEiJ_T0027622.1 MGP_CASTEiJ_G0017401.1 mouse_genomes_project 11 20818976 20862269 + MGP_CASTEiJ_P0027622 Xpo1 protein_coding protein_coding MGP_CASTEiJ_T0027623.1 MGP_CASTEiJ_G0017401.1 mouse_genomes_project 11 20818976 20862269 + MGP_CASTEiJ_P0027623 Xpo1 protein_coding protein_coding MGP_CASTEiJ_T0027624.1 MGP_CASTEiJ_G0017401.1 mouse_genomes_project 11 20818990 20860905 + MGP_CASTEiJ_P0027624 Xpo1 protein_coding protein_coding MGP_CASTEiJ_T0027625.1 MGP_CASTEiJ_G0017401.1 mouse_genomes_project 11 20818993 20846297 + Xpo1 protein_coding processed_transcript MGP_CASTEiJ_T0027626.1 MGP_CASTEiJ_G0017401.1 mouse_genomes_project 11 20819013 20862926 + MGP_CASTEiJ_P0027626 Xpo1 protein_coding protein_coding MGP_CASTEiJ_T0027627.1 MGP_CASTEiJ_G0017401.1 mouse_genomes_project 11 20819522 20830410 + MGP_CASTEiJ_P0027627 Xpo1 protein_coding protein_coding MGP_CASTEiJ_T0027628.1 MGP_CASTEiJ_G0017401.1 mouse_genomes_project 11 20849113 20851944 + MGP_CASTEiJ_P0027628 Xpo1 protein_coding protein_coding MGP_CASTEiJ_T0003074.1 MGP_CASTEiJ_G0002864.1 mouse_genomes_project 11 59282265 59287386 - Gm12264 antisense antisense MGP_CASTEiJ_T0031660.1 MGP_CASTEiJ_G0018368.1 mouse_genomes_project 11 100766368 100791533 + MGP_CASTEiJ_P0031660 Erbb2 protein_coding protein_coding MGP_CASTEiJ_T0031661.1 MGP_CASTEiJ_G0018368.1 mouse_genomes_project 11 100766391 100790892 + Erbb2 protein_coding processed_transcript MGP_CASTEiJ_T0031662.1 MGP_CASTEiJ_G0018368.1 mouse_genomes_project 11 100781023 100781516 + Erbb2 protein_coding processed_transcript MGP_CASTEiJ_T0027029.1 MGP_CASTEiJ_G0017272.1 mouse_genomes_project 11 156336 184496 - MGP_CASTEiJ_P0027029 Limk2 protein_coding protein_coding MGP_CASTEiJ_T0027030.1 MGP_CASTEiJ_G0017272.1 mouse_genomes_project 11 156566 184851 - Limk2 protein_coding processed_transcript MGP_CASTEiJ_T0027031.1 MGP_CASTEiJ_G0017272.1 mouse_genomes_project 11 156566 225121 - MGP_CASTEiJ_P0027031 Limk2 protein_coding protein_coding MGP_CASTEiJ_T0027032.1 MGP_CASTEiJ_G0017272.1 mouse_genomes_project 11 156566 184851 - MGP_CASTEiJ_P0027032 Limk2 protein_coding protein_coding MGP_CASTEiJ_T0027033.1 MGP_CASTEiJ_G0017272.1 mouse_genomes_project 11 162553 164765 - Limk2 protein_coding processed_transcript MGP_CASTEiJ_T0027034.1 MGP_CASTEiJ_G0017272.1 mouse_genomes_project 11 164719 167807 - Limk2 protein_coding processed_transcript MGP_CASTEiJ_T0027035.1 MGP_CASTEiJ_G0017272.1 mouse_genomes_project 11 165356 168142 - Limk2 protein_coding processed_transcript MGP_CASTEiJ_T0027036.1 MGP_CASTEiJ_G0017272.1 mouse_genomes_project 11 167806 225121 - Limk2 protein_coding processed_transcript MGP_CASTEiJ_T0027037.1 MGP_CASTEiJ_G0017272.1 mouse_genomes_project 11 171779 182639 - Limk2 protein_coding processed_transcript MGP_CASTEiJ_T0027038.1 MGP_CASTEiJ_G0017272.1 mouse_genomes_project 11 174063 184810 - Limk2 protein_coding processed_transcript MGP_CASTEiJ_T0027039.1 MGP_CASTEiJ_G0017272.1 mouse_genomes_project 11 211472 225136 - Limk2 protein_coding processed_transcript MGP_CASTEiJ_T0028605.1 MGP_CASTEiJ_G0017645.1 mouse_genomes_project 11 54429104 54493089 - MGP_CASTEiJ_P0028605 Fat2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028606.1 MGP_CASTEiJ_G0017645.1 mouse_genomes_project 11 54429104 54493089 - MGP_CASTEiJ_P0028606 Fat2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028607.1 MGP_CASTEiJ_G0017645.1 mouse_genomes_project 11 54429104 54493419 - MGP_CASTEiJ_P0028607 Fat2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028074.1 MGP_CASTEiJ_G0017508.1 mouse_genomes_project 11 44782774 44907933 - MGP_CASTEiJ_P0028074 Cyfip2 protein_coding protein_coding MGP_CASTEiJ_T0028075.1 MGP_CASTEiJ_G0017508.1 mouse_genomes_project 11 44782774 44907432 - MGP_CASTEiJ_P0028075 Cyfip2 protein_coding protein_coding MGP_CASTEiJ_T0028076.1 MGP_CASTEiJ_G0017508.1 mouse_genomes_project 11 44782779 44907368 - MGP_CASTEiJ_P0028076 Cyfip2 protein_coding protein_coding MGP_CASTEiJ_T0028077.1 MGP_CASTEiJ_G0017508.1 mouse_genomes_project 11 44784992 44864862 - MGP_CASTEiJ_P0028077 Cyfip2 protein_coding protein_coding MGP_CASTEiJ_T0028079.1 MGP_CASTEiJ_G0017508.1 mouse_genomes_project 11 44885876 44907294 - MGP_CASTEiJ_P0028079 Cyfip2 protein_coding protein_coding MGP_CASTEiJ_T0003042.1 MGP_CASTEiJ_G0002835.1 mouse_genomes_project 11 44732098 44735442 - Gm16033 antisense antisense MGP_CASTEiJ_T0031386.1 MGP_CASTEiJ_G0018303.1 mouse_genomes_project 11 98162753 98170684 + MGP_CASTEiJ_P0031386 Gip protein_coding protein_coding MGP_CASTEiJ_T0031387.1 MGP_CASTEiJ_G0018303.1 mouse_genomes_project 11 98163254 98170684 + MGP_CASTEiJ_P0031387 Gip protein_coding protein_coding MGP_CASTEiJ_T0027566.1 MGP_CASTEiJ_G0017389.1 mouse_genomes_project 11 19025073 19040380 - MGP_CASTEiJ_P0027566 Mdh1 protein_coding protein_coding MGP_CASTEiJ_T0027567.1 MGP_CASTEiJ_G0017389.1 mouse_genomes_project 11 19026755 19027993 - Mdh1 protein_coding processed_transcript MGP_CASTEiJ_T0027568.1 MGP_CASTEiJ_G0017389.1 mouse_genomes_project 11 19027785 19032447 - Mdh1 protein_coding processed_transcript MGP_CASTEiJ_T0027569.1 MGP_CASTEiJ_G0017389.1 mouse_genomes_project 11 19031112 19040554 - MGP_CASTEiJ_P0027569 Mdh1 protein_coding protein_coding MGP_CASTEiJ_T0030676.1 MGP_CASTEiJ_G0018135.1 mouse_genomes_project 11 83207904 83228613 - MGP_CASTEiJ_P0030676 Ccl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030677.1 MGP_CASTEiJ_G0018135.1 mouse_genomes_project 11 83225586 83358883 - Ccl1 protein_coding processed_transcript MGP_CASTEiJ_T0030678.1 MGP_CASTEiJ_G0018135.1 mouse_genomes_project 11 83225586 83228655 - MGP_CASTEiJ_P0030678 Ccl1 protein_coding protein_coding MGP_CASTEiJ_T0030679.1 MGP_CASTEiJ_G0018135.1 mouse_genomes_project 11 83225588 83228655 - MGP_CASTEiJ_P0030679 Ccl1 protein_coding protein_coding MGP_CASTEiJ_T0027419.1 MGP_CASTEiJ_G0017357.1 mouse_genomes_project 11 6327798 6363173 + protein_coding processed_transcript MGP_CASTEiJ_T0027420.1 MGP_CASTEiJ_G0017357.1 mouse_genomes_project 11 6327798 6843568 + MGP_CASTEiJ_P0027420 protein_coding protein_coding MGP_CASTEiJ_T0027421.1 MGP_CASTEiJ_G0017357.1 mouse_genomes_project 11 6327822 6721681 + MGP_CASTEiJ_P0027421 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027422.1 MGP_CASTEiJ_G0017357.1 mouse_genomes_project 11 6329306 6402206 + MGP_CASTEiJ_P0027422 protein_coding protein_coding MGP_CASTEiJ_T0027423.1 MGP_CASTEiJ_G0017357.1 mouse_genomes_project 11 6454471 6834818 + MGP_CASTEiJ_P0027423 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031614.1 MGP_CASTEiJ_G0018357.1 mouse_genomes_project 11 100344695 100345894 + Rpl19 protein_coding retained_intron MGP_CASTEiJ_T0031615.1 MGP_CASTEiJ_G0018357.1 mouse_genomes_project 11 100344724 100348213 + MGP_CASTEiJ_P0031615 Rpl19 protein_coding protein_coding MGP_CASTEiJ_T0028255.1 MGP_CASTEiJ_G0017561.1 mouse_genomes_project 11 49127271 49132517 + MGP_CASTEiJ_P0028255 Cby3 protein_coding protein_coding MGP_CASTEiJ_T0028256.1 MGP_CASTEiJ_G0017561.1 mouse_genomes_project 11 49130577 49132517 + MGP_CASTEiJ_P0028256 Cby3 protein_coding protein_coding MGP_CASTEiJ_T0033608.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124393040 124442825 - MGP_CASTEiJ_P0033608 Slc38a10 protein_coding protein_coding MGP_CASTEiJ_T0033609.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124393040 124442825 - MGP_CASTEiJ_P0033609 Slc38a10 protein_coding protein_coding MGP_CASTEiJ_T0033610.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124393531 124442791 - MGP_CASTEiJ_P0033610 Slc38a10 protein_coding protein_coding MGP_CASTEiJ_T0033611.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124393940 124442727 - MGP_CASTEiJ_P0033611 Slc38a10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033612.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124394699 124396067 - Slc38a10 protein_coding processed_transcript MGP_CASTEiJ_T0033613.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124394756 124397673 - Slc38a10 protein_coding processed_transcript MGP_CASTEiJ_T0033614.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124394870 124399542 - Slc38a10 protein_coding processed_transcript MGP_CASTEiJ_T0033615.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124394883 124399554 - Slc38a10 protein_coding processed_transcript MGP_CASTEiJ_T0033616.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124394951 124399423 - Slc38a10 protein_coding processed_transcript MGP_CASTEiJ_T0033617.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124397621 124399434 - Slc38a10 protein_coding processed_transcript MGP_CASTEiJ_T0033618.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124400088 124442758 - Slc38a10 protein_coding processed_transcript MGP_CASTEiJ_T0033619.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124407908 124442825 - MGP_CASTEiJ_P0033619 Slc38a10 protein_coding protein_coding MGP_CASTEiJ_T0033620.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124412887 124442825 - MGP_CASTEiJ_P0033620 Slc38a10 protein_coding protein_coding MGP_CASTEiJ_T0033621.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124422439 124442799 - Slc38a10 protein_coding processed_transcript MGP_CASTEiJ_T0033622.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124426093 124442766 - Slc38a10 protein_coding processed_transcript MGP_CASTEiJ_T0033623.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124429250 124442801 - Slc38a10 protein_coding processed_transcript MGP_CASTEiJ_T0033624.1 MGP_CASTEiJ_G0018795.1 mouse_genomes_project 11 124430389 124434320 - Slc38a10 protein_coding processed_transcript MGP_CASTEiJ_T0031807.1 MGP_CASTEiJ_G0018420.1 mouse_genomes_project 11 102225430 102225937 - MGP_CASTEiJ_P0031807 Gm11555 protein_coding protein_coding MGP_CASTEiJ_T0033317.1 MGP_CASTEiJ_G0018742.1 mouse_genomes_project 11 120850258 120876630 - MGP_CASTEiJ_P0033317 Mxra7 protein_coding protein_coding MGP_CASTEiJ_T0033318.1 MGP_CASTEiJ_G0018742.1 mouse_genomes_project 11 120854602 120876597 - MGP_CASTEiJ_P0033318 Mxra7 protein_coding protein_coding MGP_CASTEiJ_T0033319.1 MGP_CASTEiJ_G0018742.1 mouse_genomes_project 11 120854734 120876612 - MGP_CASTEiJ_P0033319 Mxra7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033320.1 MGP_CASTEiJ_G0018742.1 mouse_genomes_project 11 120854783 120876587 - MGP_CASTEiJ_P0033320 Mxra7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006036.1 MGP_CASTEiJ_G0005055.1 mouse_genomes_project 11 22940918 22969657 + Gm12069 lincRNA lincRNA MGP_CASTEiJ_T0006027.1 MGP_CASTEiJ_G0005047.1 mouse_genomes_project 11 21675748 21676557 + Gm12063 lincRNA lincRNA MGP_CASTEiJ_T0030844.1 MGP_CASTEiJ_G0018182.1 mouse_genomes_project 11 86139010 86180803 - MGP_CASTEiJ_P0030844 Ggnbp2 protein_coding protein_coding MGP_CASTEiJ_T0030845.1 MGP_CASTEiJ_G0018182.1 mouse_genomes_project 11 86139455 86180192 - MGP_CASTEiJ_P0030845 Ggnbp2 protein_coding protein_coding MGP_CASTEiJ_T0030846.1 MGP_CASTEiJ_G0018182.1 mouse_genomes_project 11 86139510 86180632 - MGP_CASTEiJ_P0030846 Ggnbp2 protein_coding protein_coding MGP_CASTEiJ_T0030847.1 MGP_CASTEiJ_G0018182.1 mouse_genomes_project 11 86139621 86180726 - MGP_CASTEiJ_P0030847 Ggnbp2 protein_coding protein_coding MGP_CASTEiJ_T0030848.1 MGP_CASTEiJ_G0018182.1 mouse_genomes_project 11 86139628 86180692 - MGP_CASTEiJ_P0030848 Ggnbp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030849.1 MGP_CASTEiJ_G0018182.1 mouse_genomes_project 11 86140785 86144611 - MGP_CASTEiJ_P0030849 Ggnbp2 protein_coding protein_coding MGP_CASTEiJ_T0030850.1 MGP_CASTEiJ_G0018182.1 mouse_genomes_project 11 86141161 86180711 - MGP_CASTEiJ_P0030850 Ggnbp2 protein_coding protein_coding MGP_CASTEiJ_T0030851.1 MGP_CASTEiJ_G0018182.1 mouse_genomes_project 11 86144563 86146315 - Ggnbp2 protein_coding processed_transcript MGP_CASTEiJ_T0030852.1 MGP_CASTEiJ_G0018182.1 mouse_genomes_project 11 86162147 86168484 - Ggnbp2 protein_coding processed_transcript MGP_CASTEiJ_T0030853.1 MGP_CASTEiJ_G0018182.1 mouse_genomes_project 11 86163964 86170662 - Ggnbp2 protein_coding retained_intron MGP_CASTEiJ_T0030854.1 MGP_CASTEiJ_G0018182.1 mouse_genomes_project 11 86170721 86180477 - MGP_CASTEiJ_P0030854 Ggnbp2 protein_coding protein_coding MGP_CASTEiJ_T0030855.1 MGP_CASTEiJ_G0018182.1 mouse_genomes_project 11 86178869 86180765 - Ggnbp2 protein_coding processed_transcript MGP_CASTEiJ_T0016451.1 MGP_CASTEiJ_G0014480.1 mouse_genomes_project 11 44364789 44398029 + F630206G17Rik processed_transcript processed_transcript MGP_CASTEiJ_T0012159.1 MGP_CASTEiJ_G0010322.1 mouse_genomes_project 11 17060572 17061683 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101986.1 MGP_CASTEiJ_G0038711.1 mouse_genomes_project 11 58408519 58408930 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0016524.1 MGP_CASTEiJ_G0014522.1 mouse_genomes_project 11 103063926 103064667 + Gm12348 processed_transcript processed_transcript MGP_CASTEiJ_T0027800.1 MGP_CASTEiJ_G0017435.1 mouse_genomes_project 11 28828340 29031412 + MGP_CASTEiJ_P0027800 Asb3 protein_coding protein_coding MGP_CASTEiJ_T0027805.1 MGP_CASTEiJ_G0017435.1 mouse_genomes_project 11 28899929 29032783 + MGP_CASTEiJ_P0027805 Asb3 protein_coding protein_coding MGP_CASTEiJ_T0027806.1 MGP_CASTEiJ_G0017435.1 mouse_genomes_project 11 28899940 29032783 + MGP_CASTEiJ_P0027806 Asb3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027807.1 MGP_CASTEiJ_G0017435.1 mouse_genomes_project 11 28899953 29015942 + MGP_CASTEiJ_P0027807 Asb3 protein_coding protein_coding MGP_CASTEiJ_T0027808.1 MGP_CASTEiJ_G0017435.1 mouse_genomes_project 11 28899982 28974563 + Asb3 protein_coding retained_intron MGP_CASTEiJ_T0027811.1 MGP_CASTEiJ_G0017435.1 mouse_genomes_project 11 28994263 28997144 + Asb3 protein_coding retained_intron MGP_CASTEiJ_T0028131.1 MGP_CASTEiJ_G0017524.1 mouse_genomes_project 11 47589294 47601112 - Irgm1 protein_coding processed_transcript MGP_CASTEiJ_T0028132.1 MGP_CASTEiJ_G0017524.1 mouse_genomes_project 11 47592591 47600791 - MGP_CASTEiJ_P0028132 Irgm1 protein_coding protein_coding MGP_CASTEiJ_T0028133.1 MGP_CASTEiJ_G0017524.1 mouse_genomes_project 11 47593463 47600849 - MGP_CASTEiJ_P0028133 Irgm1 protein_coding protein_coding MGP_CASTEiJ_T0027170.1 MGP_CASTEiJ_G0017306.1 mouse_genomes_project 11 1664729 1753295 - MGP_CASTEiJ_P0027170 Nf2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027171.1 MGP_CASTEiJ_G0017306.1 mouse_genomes_project 11 1664731 1753838 - MGP_CASTEiJ_P0027171 Nf2 protein_coding protein_coding MGP_CASTEiJ_T0027172.1 MGP_CASTEiJ_G0017306.1 mouse_genomes_project 11 1666560 1753287 - MGP_CASTEiJ_P0027172 Nf2 protein_coding protein_coding MGP_CASTEiJ_T0027173.1 MGP_CASTEiJ_G0017306.1 mouse_genomes_project 11 1666848 1683445 - Nf2 protein_coding retained_intron MGP_CASTEiJ_T0027174.1 MGP_CASTEiJ_G0017306.1 mouse_genomes_project 11 1667278 1753295 - MGP_CASTEiJ_P0027174 Nf2 protein_coding protein_coding MGP_CASTEiJ_T0027175.1 MGP_CASTEiJ_G0017306.1 mouse_genomes_project 11 1671389 1753667 - MGP_CASTEiJ_P0027175 Nf2 protein_coding protein_coding MGP_CASTEiJ_T0027176.1 MGP_CASTEiJ_G0017306.1 mouse_genomes_project 11 1680267 1735867 - Nf2 protein_coding processed_transcript MGP_CASTEiJ_T0027177.1 MGP_CASTEiJ_G0017306.1 mouse_genomes_project 11 1680445 1753295 - MGP_CASTEiJ_P0027177 Nf2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027178.1 MGP_CASTEiJ_G0017306.1 mouse_genomes_project 11 1682773 1717326 - MGP_CASTEiJ_P0027178 Nf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027179.1 MGP_CASTEiJ_G0017306.1 mouse_genomes_project 11 1689654 1753496 - MGP_CASTEiJ_P0027179 Nf2 protein_coding protein_coding MGP_CASTEiJ_T0027180.1 MGP_CASTEiJ_G0017306.1 mouse_genomes_project 11 1692892 1716415 - Nf2 protein_coding processed_transcript MGP_CASTEiJ_T0027181.1 MGP_CASTEiJ_G0017306.1 mouse_genomes_project 11 1692941 1719712 - MGP_CASTEiJ_P0027181 Nf2 protein_coding protein_coding MGP_CASTEiJ_T0027182.1 MGP_CASTEiJ_G0017306.1 mouse_genomes_project 11 1698590 1721551 - MGP_CASTEiJ_P0027182 Nf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027183.1 MGP_CASTEiJ_G0017306.1 mouse_genomes_project 11 1719669 1725611 - Nf2 protein_coding processed_transcript MGP_CASTEiJ_T0027184.1 MGP_CASTEiJ_G0017306.1 mouse_genomes_project 11 1730468 1753427 - MGP_CASTEiJ_P0027184 Nf2 protein_coding protein_coding MGP_CASTEiJ_T0016437.1 MGP_CASTEiJ_G0014471.1 mouse_genomes_project 11 20403248 20406308 + Gm20456 processed_transcript processed_transcript MGP_CASTEiJ_T0098462.1 MGP_CASTEiJ_G0035393.1 mouse_genomes_project 11 72637770 72637886 + n-R5s70 rRNA rRNA MGP_CASTEiJ_T0028767.1 MGP_CASTEiJ_G0017703.1 mouse_genomes_project 11 58670539 58672957 + MGP_CASTEiJ_P0028767 2310033P09Rik protein_coding protein_coding MGP_CASTEiJ_T0028735.1 MGP_CASTEiJ_G0017697.1 mouse_genomes_project 11 58424752 58438070 + MGP_CASTEiJ_P0028735 Trim11 protein_coding protein_coding MGP_CASTEiJ_T0028736.1 MGP_CASTEiJ_G0017697.1 mouse_genomes_project 11 58424774 58438073 + MGP_CASTEiJ_P0028736 Trim11 protein_coding protein_coding MGP_CASTEiJ_T0028737.1 MGP_CASTEiJ_G0017697.1 mouse_genomes_project 11 58424775 58438072 + MGP_CASTEiJ_P0028737 Trim11 protein_coding protein_coding MGP_CASTEiJ_T0028738.1 MGP_CASTEiJ_G0017697.1 mouse_genomes_project 11 58424863 58438081 + MGP_CASTEiJ_P0028738 Trim11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028739.1 MGP_CASTEiJ_G0017697.1 mouse_genomes_project 11 58424870 58438081 + MGP_CASTEiJ_P0028739 Trim11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028391.1 MGP_CASTEiJ_G0017595.1 mouse_genomes_project 11 50913636 50934963 - MGP_CASTEiJ_P0028391 Ube2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0028392.1 MGP_CASTEiJ_G0017595.1 mouse_genomes_project 11 50928568 50931474 - Ube2b protein_coding processed_transcript MGP_CASTEiJ_T0028393.1 MGP_CASTEiJ_G0017595.1 mouse_genomes_project 11 50928644 50931757 - Ube2b protein_coding processed_transcript MGP_CASTEiJ_T0032876.1 MGP_CASTEiJ_G0018658.1 mouse_genomes_project 11 117400535 117416054 - MGP_CASTEiJ_P0032876 Cpsf4l protein_coding protein_coding MGP_CASTEiJ_T0032877.1 MGP_CASTEiJ_G0018658.1 mouse_genomes_project 11 117400535 117415558 - MGP_CASTEiJ_P0032877 Cpsf4l protein_coding protein_coding MGP_CASTEiJ_T0032878.1 MGP_CASTEiJ_G0018658.1 mouse_genomes_project 11 117400535 117415564 - MGP_CASTEiJ_P0032878 Cpsf4l protein_coding protein_coding MGP_CASTEiJ_T0032879.1 MGP_CASTEiJ_G0018658.1 mouse_genomes_project 11 117400535 117415005 - MGP_CASTEiJ_P0032879 Cpsf4l protein_coding protein_coding MGP_CASTEiJ_T0032880.1 MGP_CASTEiJ_G0018658.1 mouse_genomes_project 11 117406611 117415562 - Cpsf4l protein_coding retained_intron MGP_CASTEiJ_T0012111.1 MGP_CASTEiJ_G0010274.1 mouse_genomes_project 11 467312 467683 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028665.1 MGP_CASTEiJ_G0017663.1 mouse_genomes_project 11 57562394 57570157 + MGP_CASTEiJ_P0028665 Irgm2 protein_coding protein_coding MGP_CASTEiJ_T0028666.1 MGP_CASTEiJ_G0017663.1 mouse_genomes_project 11 57562413 57570165 + MGP_CASTEiJ_P0028666 Irgm2 protein_coding protein_coding MGP_CASTEiJ_T0028244.1 MGP_CASTEiJ_G0017558.1 mouse_genomes_project 11 48999092 49001094 - MGP_CASTEiJ_P0028244 protein_coding protein_coding MGP_CASTEiJ_T0028245.1 MGP_CASTEiJ_G0017558.1 mouse_genomes_project 11 48999095 49001155 - MGP_CASTEiJ_P0028245 protein_coding protein_coding MGP_CASTEiJ_T0028246.1 MGP_CASTEiJ_G0017558.1 mouse_genomes_project 11 48999095 49001239 - MGP_CASTEiJ_P0028246 protein_coding protein_coding MGP_CASTEiJ_T0102015.1 MGP_CASTEiJ_G0038740.1 mouse_genomes_project 11 104086245 104087148 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0009431.1 MGP_CASTEiJ_G0007619.1 mouse_genomes_project 11 51071882 51071973 + Mir3061 miRNA miRNA MGP_CASTEiJ_T0031394.1 MGP_CASTEiJ_G0018306.1 mouse_genomes_project 11 98209939 98218898 - MGP_CASTEiJ_P0031394 Atp5g1 protein_coding protein_coding MGP_CASTEiJ_T0031395.1 MGP_CASTEiJ_G0018306.1 mouse_genomes_project 11 98209954 98218266 - MGP_CASTEiJ_P0031395 Atp5g1 protein_coding protein_coding MGP_CASTEiJ_T0031396.1 MGP_CASTEiJ_G0018306.1 mouse_genomes_project 11 98214103 98218877 - MGP_CASTEiJ_P0031396 Atp5g1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031397.1 MGP_CASTEiJ_G0018306.1 mouse_genomes_project 11 98214105 98218809 - MGP_CASTEiJ_P0031397 Atp5g1 protein_coding protein_coding MGP_CASTEiJ_T0031398.1 MGP_CASTEiJ_G0018306.1 mouse_genomes_project 11 98214108 98218847 - MGP_CASTEiJ_P0031398 Atp5g1 protein_coding protein_coding MGP_CASTEiJ_T0030655.1 MGP_CASTEiJ_G0018123.1 mouse_genomes_project 11 81404885 81409063 + MGP_CASTEiJ_P0030655 Cdk5r1 protein_coding protein_coding MGP_CASTEiJ_T0030656.1 MGP_CASTEiJ_G0018123.1 mouse_genomes_project 11 81404918 81405786 + MGP_CASTEiJ_P0030656 Cdk5r1 protein_coding protein_coding MGP_CASTEiJ_T0029413.1 MGP_CASTEiJ_G0017840.1 mouse_genomes_project 11 69461447 69462285 + Naa38 protein_coding processed_transcript MGP_CASTEiJ_T0029414.1 MGP_CASTEiJ_G0017840.1 mouse_genomes_project 11 69461607 69462641 + MGP_CASTEiJ_P0029414 Naa38 protein_coding protein_coding MGP_CASTEiJ_T0029415.1 MGP_CASTEiJ_G0017840.1 mouse_genomes_project 11 69461774 69462641 + Naa38 protein_coding processed_transcript MGP_CASTEiJ_T0029416.1 MGP_CASTEiJ_G0017840.1 mouse_genomes_project 11 69462078 69462641 + Naa38 protein_coding processed_transcript MGP_CASTEiJ_T0099263.1 MGP_CASTEiJ_G0036176.1 mouse_genomes_project 11 88890557 88890721 + Gm22068 snRNA snRNA MGP_CASTEiJ_T0029397.1 MGP_CASTEiJ_G0017836.1 mouse_genomes_project 11 69389519 69396309 + MGP_CASTEiJ_P0029397 Kcnab3 protein_coding protein_coding MGP_CASTEiJ_T0029398.1 MGP_CASTEiJ_G0017836.1 mouse_genomes_project 11 69391122 69396309 + Kcnab3 protein_coding retained_intron MGP_CASTEiJ_T0029399.1 MGP_CASTEiJ_G0017836.1 mouse_genomes_project 11 69393580 69395410 + Kcnab3 protein_coding retained_intron MGP_CASTEiJ_T0003210.1 MGP_CASTEiJ_G0002973.1 mouse_genomes_project 11 110201724 110204058 + antisense antisense MGP_CASTEiJ_T0003211.1 MGP_CASTEiJ_G0002973.1 mouse_genomes_project 11 110201829 110204063 + antisense antisense MGP_CASTEiJ_T0027881.1 MGP_CASTEiJ_G0017456.1 mouse_genomes_project 11 30515576 30611632 + MGP_CASTEiJ_P0027881 Stk10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027882.1 MGP_CASTEiJ_G0017456.1 mouse_genomes_project 11 30572614 30582510 + Stk10 protein_coding retained_intron MGP_CASTEiJ_T0028689.1 MGP_CASTEiJ_G0017672.1 mouse_genomes_project 11 57825137 57826203 - MGP_CASTEiJ_P0028689 Olfr30 protein_coding protein_coding MGP_CASTEiJ_T0012311.1 MGP_CASTEiJ_G0010474.1 mouse_genomes_project 11 74233731 74233911 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031834.1 MGP_CASTEiJ_G0018445.1 mouse_genomes_project 11 102730142 102733765 - MGP_CASTEiJ_P0031834 Krt36 protein_coding protein_coding MGP_CASTEiJ_T0027463.1 MGP_CASTEiJ_G0017365.1 mouse_genomes_project 11 9496415 9733212 - MGP_CASTEiJ_P0027463 Cobl protein_coding protein_coding MGP_CASTEiJ_T0027464.1 MGP_CASTEiJ_G0017365.1 mouse_genomes_project 11 9496483 9733365 - MGP_CASTEiJ_P0027464 Cobl protein_coding protein_coding MGP_CASTEiJ_T0027465.1 MGP_CASTEiJ_G0017365.1 mouse_genomes_project 11 9496483 9733267 - MGP_CASTEiJ_P0027465 Cobl protein_coding protein_coding MGP_CASTEiJ_T0027466.1 MGP_CASTEiJ_G0017365.1 mouse_genomes_project 11 9496485 9677975 - MGP_CASTEiJ_P0027466 Cobl protein_coding protein_coding MGP_CASTEiJ_T0027467.1 MGP_CASTEiJ_G0017365.1 mouse_genomes_project 11 9496485 9733368 - MGP_CASTEiJ_P0027467 Cobl protein_coding protein_coding MGP_CASTEiJ_T0027468.1 MGP_CASTEiJ_G0017365.1 mouse_genomes_project 11 9496919 9733208 - MGP_CASTEiJ_P0027468 Cobl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027469.1 MGP_CASTEiJ_G0017365.1 mouse_genomes_project 11 9528749 9634345 - MGP_CASTEiJ_P0027469 Cobl protein_coding protein_coding MGP_CASTEiJ_T0027470.1 MGP_CASTEiJ_G0017365.1 mouse_genomes_project 11 9558191 9634293 - MGP_CASTEiJ_P0027470 Cobl protein_coding protein_coding MGP_CASTEiJ_T0027471.1 MGP_CASTEiJ_G0017365.1 mouse_genomes_project 11 9567776 9733160 - Cobl protein_coding retained_intron MGP_CASTEiJ_T0027472.1 MGP_CASTEiJ_G0017365.1 mouse_genomes_project 11 9609204 9644517 - MGP_CASTEiJ_P0027472 Cobl protein_coding protein_coding MGP_CASTEiJ_T0006110.1 MGP_CASTEiJ_G0005116.1 mouse_genomes_project 11 72070786 72071856 - Gm12326 lincRNA lincRNA MGP_CASTEiJ_T0006111.1 MGP_CASTEiJ_G0005116.1 mouse_genomes_project 11 72071400 72071837 - Gm12326 lincRNA lincRNA MGP_CASTEiJ_T0016479.1 MGP_CASTEiJ_G0014496.1 mouse_genomes_project 11 72625450 72627605 + 1700051A21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016480.1 MGP_CASTEiJ_G0014496.1 mouse_genomes_project 11 72625862 72627587 + 1700051A21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0031453.1 MGP_CASTEiJ_G0018322.1 mouse_genomes_project 11 99056292 99058015 + Copz2 protein_coding retained_intron MGP_CASTEiJ_T0031454.1 MGP_CASTEiJ_G0018322.1 mouse_genomes_project 11 99056298 99069790 + MGP_CASTEiJ_P0031454 Copz2 protein_coding protein_coding MGP_CASTEiJ_T0031455.1 MGP_CASTEiJ_G0018322.1 mouse_genomes_project 11 99056303 99060439 + MGP_CASTEiJ_P0031455 Copz2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031456.1 MGP_CASTEiJ_G0018322.1 mouse_genomes_project 11 99060185 99063348 + Copz2 protein_coding retained_intron MGP_CASTEiJ_T0031457.1 MGP_CASTEiJ_G0018322.1 mouse_genomes_project 11 99060416 99069790 + MGP_CASTEiJ_P0031457 Copz2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006057.1 MGP_CASTEiJ_G0005071.1 mouse_genomes_project 11 38349334 38683998 + lincRNA lincRNA MGP_CASTEiJ_T0030672.1 MGP_CASTEiJ_G0018132.1 mouse_genomes_project 11 83095359 83100446 + MGP_CASTEiJ_P0030672 Ccl11 protein_coding protein_coding MGP_CASTEiJ_T0028345.1 MGP_CASTEiJ_G0017582.1 mouse_genomes_project 11 50167617 50474818 + MGP_CASTEiJ_P0028345 Col23a1 protein_coding protein_coding MGP_CASTEiJ_T0028346.1 MGP_CASTEiJ_G0017582.1 mouse_genomes_project 11 50167844 50471063 + MGP_CASTEiJ_P0028346 Col23a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028347.1 MGP_CASTEiJ_G0017582.1 mouse_genomes_project 11 50167844 50471063 + MGP_CASTEiJ_P0028347 Col23a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028348.1 MGP_CASTEiJ_G0017582.1 mouse_genomes_project 11 50465636 50471198 + MGP_CASTEiJ_P0028348 Col23a1 protein_coding protein_coding MGP_CASTEiJ_T0032051.1 MGP_CASTEiJ_G0018496.1 mouse_genomes_project 11 104008436 104009584 - MGP_CASTEiJ_P0032051 Coa3 protein_coding protein_coding MGP_CASTEiJ_T0032052.1 MGP_CASTEiJ_G0018496.1 mouse_genomes_project 11 104008807 104009413 - MGP_CASTEiJ_P0032052 Coa3 protein_coding protein_coding MGP_CASTEiJ_T0016544.1 MGP_CASTEiJ_G0014534.1 mouse_genomes_project 11 121737205 121739753 + 2900041M22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0030724.1 MGP_CASTEiJ_G0018144.1 mouse_genomes_project 11 84011435 84042037 + MGP_CASTEiJ_P0030724 Unc45b protein_coding protein_coding MGP_CASTEiJ_T0030725.1 MGP_CASTEiJ_G0018144.1 mouse_genomes_project 11 84012137 84042037 + MGP_CASTEiJ_P0030725 Unc45b protein_coding protein_coding MGP_CASTEiJ_T0030726.1 MGP_CASTEiJ_G0018144.1 mouse_genomes_project 11 84012137 84042037 + MGP_CASTEiJ_P0030726 Unc45b protein_coding protein_coding MGP_CASTEiJ_T0030727.1 MGP_CASTEiJ_G0018144.1 mouse_genomes_project 11 84012491 84041725 + MGP_CASTEiJ_P0030727 Unc45b protein_coding unknown_likely_coding MGP_CASTEiJ_T0030728.1 MGP_CASTEiJ_G0018144.1 mouse_genomes_project 11 84029807 84030594 + Unc45b protein_coding processed_transcript MGP_CASTEiJ_T0030729.1 MGP_CASTEiJ_G0018144.1 mouse_genomes_project 11 84032267 84036363 + Unc45b protein_coding processed_transcript MGP_CASTEiJ_T0027504.1 MGP_CASTEiJ_G0017375.1 mouse_genomes_project 11 14589107 14594423 + C1d protein_coding processed_transcript MGP_CASTEiJ_T0027505.1 MGP_CASTEiJ_G0017375.1 mouse_genomes_project 11 14589120 14595804 + C1d protein_coding processed_transcript MGP_CASTEiJ_T0027506.1 MGP_CASTEiJ_G0017375.1 mouse_genomes_project 11 14589122 14600679 + MGP_CASTEiJ_P0027506 C1d protein_coding protein_coding MGP_CASTEiJ_T0027507.1 MGP_CASTEiJ_G0017375.1 mouse_genomes_project 11 14589216 14598135 + MGP_CASTEiJ_P0027507 C1d protein_coding protein_coding MGP_CASTEiJ_T0027508.1 MGP_CASTEiJ_G0017375.1 mouse_genomes_project 11 14595129 14598071 + C1d protein_coding processed_transcript MGP_CASTEiJ_T0003194.1 MGP_CASTEiJ_G0002958.1 mouse_genomes_project 11 104826322 104831131 - E130111B04Rik antisense antisense MGP_CASTEiJ_T0010976.1 MGP_CASTEiJ_G0009164.1 mouse_genomes_project 11 85088238 85088546 + Gm23211 misc_RNA misc_RNA MGP_CASTEiJ_T0006073.1 MGP_CASTEiJ_G0005085.1 mouse_genomes_project 11 49937286 49947739 + 9230009I02Rik lincRNA lincRNA MGP_CASTEiJ_T0016439.1 MGP_CASTEiJ_G0014473.1 mouse_genomes_project 11 20643732 20652731 + Gm12059 processed_transcript processed_transcript MGP_CASTEiJ_T0100426.1 MGP_CASTEiJ_G0037339.1 mouse_genomes_project 11 23336247 23336377 + Gm23514 snoRNA snoRNA MGP_CASTEiJ_T0101985.1 MGP_CASTEiJ_G0038710.1 mouse_genomes_project 11 57942655 57943047 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0028705.1 MGP_CASTEiJ_G0017683.1 mouse_genomes_project 11 58012451 58026379 + MGP_CASTEiJ_P0028705 Trim58 protein_coding protein_coding MGP_CASTEiJ_T0028706.1 MGP_CASTEiJ_G0017683.1 mouse_genomes_project 11 58012730 58026010 + MGP_CASTEiJ_P0028706 Trim58 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028707.1 MGP_CASTEiJ_G0017683.1 mouse_genomes_project 11 58012753 58026010 + MGP_CASTEiJ_P0028707 Trim58 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028020.1 MGP_CASTEiJ_G0017494.1 mouse_genomes_project 11 42031015 42040102 - MGP_CASTEiJ_P0028020 Fabp6 protein_coding protein_coding MGP_CASTEiJ_T0028073.1 MGP_CASTEiJ_G0017507.1 mouse_genomes_project 11 44736821 44754617 - MGP_CASTEiJ_P0028073 Nipal4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033499.1 MGP_CASTEiJ_G0018777.1 mouse_genomes_project 11 123259826 123301773 - MGP_CASTEiJ_P0033499 Cbx4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033500.1 MGP_CASTEiJ_G0018777.1 mouse_genomes_project 11 123293224 123301902 - MGP_CASTEiJ_P0033500 Cbx4 protein_coding protein_coding MGP_CASTEiJ_T0033501.1 MGP_CASTEiJ_G0018777.1 mouse_genomes_project 11 123297050 123301902 - Cbx4 protein_coding processed_transcript MGP_CASTEiJ_T0031847.1 MGP_CASTEiJ_G0018452.1 mouse_genomes_project 11 102897711 102902526 - MGP_CASTEiJ_P0031847 Krt17 protein_coding protein_coding MGP_CASTEiJ_T0003212.1 MGP_CASTEiJ_G0002974.1 mouse_genomes_project 11 110343001 110353291 + Gm11715 antisense antisense MGP_CASTEiJ_T0031810.1 MGP_CASTEiJ_G0018423.1 mouse_genomes_project 11 102314443 102319746 - MGP_CASTEiJ_P0031810 Gm14180 protein_coding protein_coding MGP_CASTEiJ_T0100433.1 MGP_CASTEiJ_G0037346.1 mouse_genomes_project 11 47398422 47398541 + Gm24422 snoRNA snoRNA MGP_CASTEiJ_T0033403.1 MGP_CASTEiJ_G0018757.1 mouse_genomes_project 11 121949305 121959712 - MGP_CASTEiJ_P0033403 Tk1 protein_coding protein_coding MGP_CASTEiJ_T0033404.1 MGP_CASTEiJ_G0018757.1 mouse_genomes_project 11 121949394 121950235 - Tk1 protein_coding retained_intron MGP_CASTEiJ_T0033405.1 MGP_CASTEiJ_G0018757.1 mouse_genomes_project 11 121949675 121951003 - Tk1 protein_coding retained_intron MGP_CASTEiJ_T0033406.1 MGP_CASTEiJ_G0018757.1 mouse_genomes_project 11 121955231 121959447 - Tk1 protein_coding retained_intron MGP_CASTEiJ_T0033407.1 MGP_CASTEiJ_G0018757.1 mouse_genomes_project 11 121955309 121959487 - Tk1 protein_coding retained_intron MGP_CASTEiJ_T0033408.1 MGP_CASTEiJ_G0018757.1 mouse_genomes_project 11 121956083 121959467 - Tk1 protein_coding retained_intron MGP_CASTEiJ_T0033409.1 MGP_CASTEiJ_G0018757.1 mouse_genomes_project 11 121958450 121959427 - Tk1 protein_coding retained_intron MGP_CASTEiJ_T0012391.1 MGP_CASTEiJ_G0010554.1 mouse_genomes_project 11 107519448 107519860 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028644.1 MGP_CASTEiJ_G0017657.1 mouse_genomes_project 11 57259261 57262066 - MGP_CASTEiJ_P0028644 Bex4 protein_coding protein_coding MGP_CASTEiJ_T0032595.1 MGP_CASTEiJ_G0018599.1 mouse_genomes_project 11 109257167 109257476 + MGP_CASTEiJ_P0032595 Gm10840 protein_coding protein_coding MGP_CASTEiJ_T0027537.1 MGP_CASTEiJ_G0017384.1 mouse_genomes_project 11 18102554 18162808 - MGP_CASTEiJ_P0027537 Aftph protein_coding protein_coding MGP_CASTEiJ_T0027538.1 MGP_CASTEiJ_G0017384.1 mouse_genomes_project 11 18102554 18148813 - MGP_CASTEiJ_P0027538 Aftph protein_coding protein_coding MGP_CASTEiJ_T0027539.1 MGP_CASTEiJ_G0017384.1 mouse_genomes_project 11 18103187 18148348 - MGP_CASTEiJ_P0027539 Aftph protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027540.1 MGP_CASTEiJ_G0017384.1 mouse_genomes_project 11 18103213 18162671 - MGP_CASTEiJ_P0027540 Aftph protein_coding protein_coding MGP_CASTEiJ_T0027541.1 MGP_CASTEiJ_G0017384.1 mouse_genomes_project 11 18103452 18110289 - Aftph protein_coding retained_intron MGP_CASTEiJ_T0027542.1 MGP_CASTEiJ_G0017384.1 mouse_genomes_project 11 18103589 18147378 - MGP_CASTEiJ_P0027542 Aftph protein_coding protein_coding MGP_CASTEiJ_T0027543.1 MGP_CASTEiJ_G0017384.1 mouse_genomes_project 11 18113503 18132590 - Aftph protein_coding retained_intron MGP_CASTEiJ_T0027544.1 MGP_CASTEiJ_G0017384.1 mouse_genomes_project 11 18121973 18132516 - Aftph protein_coding retained_intron MGP_CASTEiJ_T0027545.1 MGP_CASTEiJ_G0017384.1 mouse_genomes_project 11 18128909 18132496 - Aftph protein_coding retained_intron MGP_CASTEiJ_T0101999.1 MGP_CASTEiJ_G0038724.1 mouse_genomes_project 11 84878380 84879328 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0012251.1 MGP_CASTEiJ_G0010414.1 mouse_genomes_project 11 53014856 53016707 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031522.1 MGP_CASTEiJ_G0018336.1 mouse_genomes_project 11 99568432 99583592 + MGP_CASTEiJ_P0031522 Mrpl45 protein_coding protein_coding MGP_CASTEiJ_T0031523.1 MGP_CASTEiJ_G0018336.1 mouse_genomes_project 11 99568624 99574240 + MGP_CASTEiJ_P0031523 Mrpl45 protein_coding protein_coding MGP_CASTEiJ_T0031832.1 MGP_CASTEiJ_G0018444.1 mouse_genomes_project 11 102719096 102723002 - MGP_CASTEiJ_P0031832 Krt35 protein_coding protein_coding MGP_CASTEiJ_T0031833.1 MGP_CASTEiJ_G0018444.1 mouse_genomes_project 11 102719098 102723018 - Krt35 protein_coding retained_intron MGP_CASTEiJ_T0006209.1 MGP_CASTEiJ_G0005185.1 mouse_genomes_project 11 121513719 121514702 + Gm11729 lincRNA lincRNA MGP_CASTEiJ_T0030954.1 MGP_CASTEiJ_G0018203.1 mouse_genomes_project 11 88129398 88197072 - MGP_CASTEiJ_P0030954 Cltc protein_coding protein_coding MGP_CASTEiJ_T0030955.1 MGP_CASTEiJ_G0018203.1 mouse_genomes_project 11 88130058 88138430 - MGP_CASTEiJ_P0030955 Cltc protein_coding protein_coding MGP_CASTEiJ_T0030956.1 MGP_CASTEiJ_G0018203.1 mouse_genomes_project 11 88130307 88197594 - MGP_CASTEiJ_P0030956 Cltc protein_coding unknown_likely_coding MGP_CASTEiJ_T0030957.1 MGP_CASTEiJ_G0018203.1 mouse_genomes_project 11 88135669 88137163 - Cltc protein_coding processed_transcript MGP_CASTEiJ_T0030958.1 MGP_CASTEiJ_G0018203.1 mouse_genomes_project 11 88157722 88161335 - Cltc protein_coding retained_intron MGP_CASTEiJ_T0030959.1 MGP_CASTEiJ_G0018203.1 mouse_genomes_project 11 88158643 88161304 - Cltc protein_coding processed_transcript MGP_CASTEiJ_T0012262.1 MGP_CASTEiJ_G0010425.1 mouse_genomes_project 11 55502950 55503179 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030293.1 MGP_CASTEiJ_G0018049.1 mouse_genomes_project 11 77629617 77668724 + MGP_CASTEiJ_P0030293 Slc6a4 protein_coding protein_coding MGP_CASTEiJ_T0030294.1 MGP_CASTEiJ_G0018049.1 mouse_genomes_project 11 77629630 77668725 + MGP_CASTEiJ_P0030294 Slc6a4 protein_coding protein_coding MGP_CASTEiJ_T0030295.1 MGP_CASTEiJ_G0018049.1 mouse_genomes_project 11 77640272 77644082 + MGP_CASTEiJ_P0030295 Slc6a4 protein_coding protein_coding MGP_CASTEiJ_T0030296.1 MGP_CASTEiJ_G0018049.1 mouse_genomes_project 11 77651575 77655754 + Slc6a4 protein_coding retained_intron MGP_CASTEiJ_T0003132.1 MGP_CASTEiJ_G0002912.1 mouse_genomes_project 11 82590028 82596114 + Gm11418 antisense antisense MGP_CASTEiJ_T0099231.1 MGP_CASTEiJ_G0036144.1 mouse_genomes_project 11 46604338 46604499 - Gm23039 snRNA snRNA MGP_CASTEiJ_T0030218.1 MGP_CASTEiJ_G0018032.1 mouse_genomes_project 11 76582136 76585839 + MGP_CASTEiJ_P0030218 1700016K19Rik protein_coding protein_coding MGP_CASTEiJ_T0012390.1 MGP_CASTEiJ_G0010553.1 mouse_genomes_project 11 106846503 106846830 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003076.1 MGP_CASTEiJ_G0002866.1 mouse_genomes_project 11 59459836 59461084 - Med9os antisense antisense MGP_CASTEiJ_T0003077.1 MGP_CASTEiJ_G0002866.1 mouse_genomes_project 11 59459836 59461085 - Med9os antisense antisense MGP_CASTEiJ_T0003078.1 MGP_CASTEiJ_G0002866.1 mouse_genomes_project 11 59459836 59461034 - Med9os antisense antisense MGP_CASTEiJ_T0099232.1 MGP_CASTEiJ_G0036145.1 mouse_genomes_project 11 50890930 50891038 + Gm26061 snRNA snRNA MGP_CASTEiJ_T0033227.1 MGP_CASTEiJ_G0018725.1 mouse_genomes_project 11 120227277 120256419 - Srp68 protein_coding processed_transcript MGP_CASTEiJ_T0033228.1 MGP_CASTEiJ_G0018725.1 mouse_genomes_project 11 120227277 120256337 - MGP_CASTEiJ_P0033228 Srp68 protein_coding protein_coding MGP_CASTEiJ_T0033229.1 MGP_CASTEiJ_G0018725.1 mouse_genomes_project 11 120227277 120256419 - MGP_CASTEiJ_P0033229 Srp68 protein_coding protein_coding MGP_CASTEiJ_T0033230.1 MGP_CASTEiJ_G0018725.1 mouse_genomes_project 11 120230881 120243530 - Srp68 protein_coding processed_transcript MGP_CASTEiJ_T0033523.1 MGP_CASTEiJ_G0018781.1 mouse_genomes_project 11 123519712 123534745 - MGP_CASTEiJ_P0033523 Eif4a3 protein_coding protein_coding MGP_CASTEiJ_T0033524.1 MGP_CASTEiJ_G0018781.1 mouse_genomes_project 11 123519713 123520416 - Eif4a3 protein_coding processed_transcript MGP_CASTEiJ_T0033525.1 MGP_CASTEiJ_G0018781.1 mouse_genomes_project 11 123519713 123520360 - Eif4a3 protein_coding processed_transcript MGP_CASTEiJ_T0033526.1 MGP_CASTEiJ_G0018781.1 mouse_genomes_project 11 123527051 123528178 - Eif4a3 protein_coding processed_transcript MGP_CASTEiJ_T0033527.1 MGP_CASTEiJ_G0018781.1 mouse_genomes_project 11 123527414 123534670 - MGP_CASTEiJ_P0033527 Eif4a3 protein_coding protein_coding MGP_CASTEiJ_T0033528.1 MGP_CASTEiJ_G0018781.1 mouse_genomes_project 11 123532493 123534674 - Eif4a3 protein_coding processed_transcript MGP_CASTEiJ_T0032449.1 MGP_CASTEiJ_G0018567.1 mouse_genomes_project 11 106239552 106280873 - MGP_CASTEiJ_P0032449 Arhgap27 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032450.1 MGP_CASTEiJ_G0018567.1 mouse_genomes_project 11 106267741 106298820 - MGP_CASTEiJ_P0032450 Arhgap27 protein_coding protein_coding MGP_CASTEiJ_T0032451.1 MGP_CASTEiJ_G0018567.1 mouse_genomes_project 11 106267742 106301592 - Arhgap27 protein_coding retained_intron MGP_CASTEiJ_T0032452.1 MGP_CASTEiJ_G0018567.1 mouse_genomes_project 11 106267744 106280960 - MGP_CASTEiJ_P0032452 Arhgap27 protein_coding protein_coding MGP_CASTEiJ_T0032453.1 MGP_CASTEiJ_G0018567.1 mouse_genomes_project 11 106269417 106270361 - Arhgap27 protein_coding retained_intron MGP_CASTEiJ_T0032454.1 MGP_CASTEiJ_G0018567.1 mouse_genomes_project 11 106269480 106269647 - Arhgap27 protein_coding processed_transcript MGP_CASTEiJ_T0032455.1 MGP_CASTEiJ_G0018567.1 mouse_genomes_project 11 106269716 106270340 - Arhgap27 protein_coding retained_intron MGP_CASTEiJ_T0032456.1 MGP_CASTEiJ_G0018567.1 mouse_genomes_project 11 106271517 106275955 - Arhgap27 protein_coding retained_intron MGP_CASTEiJ_T0032457.1 MGP_CASTEiJ_G0018567.1 mouse_genomes_project 11 106273995 106275539 - Arhgap27 protein_coding retained_intron MGP_CASTEiJ_T0032458.1 MGP_CASTEiJ_G0018567.1 mouse_genomes_project 11 106275464 106292483 - MGP_CASTEiJ_P0032458 Arhgap27 protein_coding protein_coding MGP_CASTEiJ_T0032459.1 MGP_CASTEiJ_G0018567.1 mouse_genomes_project 11 106276367 106292497 - MGP_CASTEiJ_P0032459 Arhgap27 protein_coding protein_coding MGP_CASTEiJ_T0032460.1 MGP_CASTEiJ_G0018567.1 mouse_genomes_project 11 106297289 106301203 - MGP_CASTEiJ_P0032460 Arhgap27 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032461.1 MGP_CASTEiJ_G0018567.1 mouse_genomes_project 11 106297660 106301364 - MGP_CASTEiJ_P0032461 Arhgap27 protein_coding protein_coding MGP_CASTEiJ_T0012358.1 MGP_CASTEiJ_G0010521.1 mouse_genomes_project 11 94589438 94590019 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003015.1 MGP_CASTEiJ_G0002813.1 mouse_genomes_project 11 9135223 9153365 + 1700042O10Rik antisense antisense MGP_CASTEiJ_T0028312.1 MGP_CASTEiJ_G0017571.1 mouse_genomes_project 11 49753865 49756919 - MGP_CASTEiJ_P0028312 4933414I15Rik protein_coding protein_coding MGP_CASTEiJ_T0028313.1 MGP_CASTEiJ_G0017571.1 mouse_genomes_project 11 49754852 49756895 - 4933414I15Rik protein_coding processed_transcript MGP_CASTEiJ_T0009514.1 MGP_CASTEiJ_G0007702.1 mouse_genomes_project 11 111262552 111262621 + Mir7223 miRNA miRNA MGP_CASTEiJ_T0031974.1 MGP_CASTEiJ_G0018479.1 mouse_genomes_project 11 103655511 103669952 - MGP_CASTEiJ_P0031974 Ptrf protein_coding protein_coding MGP_CASTEiJ_T0031975.1 MGP_CASTEiJ_G0018479.1 mouse_genomes_project 11 103663319 103669616 - Ptrf protein_coding processed_transcript MGP_CASTEiJ_T0028573.1 MGP_CASTEiJ_G0017637.1 mouse_genomes_project 11 54063740 54070797 + MGP_CASTEiJ_P0028573 Gpx3 protein_coding protein_coding MGP_CASTEiJ_T0028574.1 MGP_CASTEiJ_G0017637.1 mouse_genomes_project 11 54064058 54071598 + MGP_CASTEiJ_P0028574 Gpx3 protein_coding protein_coding MGP_CASTEiJ_T0028575.1 MGP_CASTEiJ_G0017637.1 mouse_genomes_project 11 54064212 54070755 + MGP_CASTEiJ_P0028575 Gpx3 protein_coding protein_coding MGP_CASTEiJ_T0003200.1 MGP_CASTEiJ_G0002964.1 mouse_genomes_project 11 106301112 106302569 + Arhgap27os1 antisense antisense MGP_CASTEiJ_T0028710.1 MGP_CASTEiJ_G0017686.1 mouse_genomes_project 11 58159836 58164935 + MGP_CASTEiJ_P0028710 Olfr315 protein_coding protein_coding MGP_CASTEiJ_T0028711.1 MGP_CASTEiJ_G0017686.1 mouse_genomes_project 11 58164515 58165513 + MGP_CASTEiJ_P0028711 Olfr315 protein_coding protein_coding MGP_CASTEiJ_T0012335.1 MGP_CASTEiJ_G0010498.1 mouse_genomes_project 11 83805312 83805606 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030615.1 MGP_CASTEiJ_G0018117.1 mouse_genomes_project 11 81088572 81107180 + MGP_CASTEiJ_P0030615 Rnf135 protein_coding protein_coding MGP_CASTEiJ_T0030616.1 MGP_CASTEiJ_G0018117.1 mouse_genomes_project 11 81088944 81095979 + Rnf135 protein_coding processed_transcript MGP_CASTEiJ_T0006105.1 MGP_CASTEiJ_G0005112.1 mouse_genomes_project 11 71747574 71753998 - Gm16013 lincRNA lincRNA MGP_CASTEiJ_T0032470.1 MGP_CASTEiJ_G0018572.1 mouse_genomes_project 11 106630829 106651644 - MGP_CASTEiJ_P0032470 Gosr2 protein_coding protein_coding MGP_CASTEiJ_T0032471.1 MGP_CASTEiJ_G0018572.1 mouse_genomes_project 11 106632291 106651440 - MGP_CASTEiJ_P0032471 Gosr2 protein_coding protein_coding MGP_CASTEiJ_T0032472.1 MGP_CASTEiJ_G0018572.1 mouse_genomes_project 11 106632498 106651444 - Gosr2 protein_coding processed_transcript MGP_CASTEiJ_T0003216.1 MGP_CASTEiJ_G0002978.1 mouse_genomes_project 11 111259448 111260058 + Gm11657 antisense antisense MGP_CASTEiJ_T0030928.1 MGP_CASTEiJ_G0018198.1 mouse_genomes_project 11 87899827 87916239 + MGP_CASTEiJ_P0030928 Rnft1 protein_coding protein_coding MGP_CASTEiJ_T0030929.1 MGP_CASTEiJ_G0018198.1 mouse_genomes_project 11 87899855 87907730 + Rnft1 protein_coding processed_transcript MGP_CASTEiJ_T0030930.1 MGP_CASTEiJ_G0018198.1 mouse_genomes_project 11 87899900 87901277 + Rnft1 protein_coding processed_transcript MGP_CASTEiJ_T0031759.1 MGP_CASTEiJ_G0018390.1 mouse_genomes_project 11 101557716 101575327 + MGP_CASTEiJ_P0031759 Igfbp4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031760.1 MGP_CASTEiJ_G0018390.1 mouse_genomes_project 11 101558016 101569391 + MGP_CASTEiJ_P0031760 Igfbp4 protein_coding protein_coding MGP_CASTEiJ_T0031761.1 MGP_CASTEiJ_G0018390.1 mouse_genomes_project 11 101558442 101566050 + Igfbp4 protein_coding processed_transcript MGP_CASTEiJ_T0031762.1 MGP_CASTEiJ_G0018390.1 mouse_genomes_project 11 101561278 101569645 + Igfbp4 protein_coding processed_transcript MGP_CASTEiJ_T0031763.1 MGP_CASTEiJ_G0018390.1 mouse_genomes_project 11 101562446 101569540 + Igfbp4 protein_coding processed_transcript MGP_CASTEiJ_T0031764.1 MGP_CASTEiJ_G0018390.1 mouse_genomes_project 11 101564991 101569537 + MGP_CASTEiJ_P0031764 Igfbp4 protein_coding protein_coding MGP_CASTEiJ_T0098326.1 MGP_CASTEiJ_G0035257.1 mouse_genomes_project 11 117153739 117157790 + pseudogene pseudogene MGP_CASTEiJ_T0006115.1 MGP_CASTEiJ_G0005119.1 mouse_genomes_project 11 75962749 75963370 - Gm12336 lincRNA lincRNA MGP_CASTEiJ_T0033886.1 MGP_CASTEiJ_G0018848.1 mouse_genomes_project 11 125709419 125739377 - MGP_CASTEiJ_P0033886 Wdr45b protein_coding unknown_likely_coding MGP_CASTEiJ_T0033887.1 MGP_CASTEiJ_G0018848.1 mouse_genomes_project 11 125709419 125739377 - MGP_CASTEiJ_P0033887 Wdr45b protein_coding unknown_likely_coding MGP_CASTEiJ_T0033888.1 MGP_CASTEiJ_G0018848.1 mouse_genomes_project 11 125709419 125739380 - MGP_CASTEiJ_P0033888 Wdr45b protein_coding unknown_likely_coding MGP_CASTEiJ_T0033889.1 MGP_CASTEiJ_G0018848.1 mouse_genomes_project 11 125710417 125725193 - Wdr45b protein_coding processed_transcript MGP_CASTEiJ_T0033890.1 MGP_CASTEiJ_G0018848.1 mouse_genomes_project 11 125713532 125739386 - MGP_CASTEiJ_P0033890 Wdr45b protein_coding protein_coding MGP_CASTEiJ_T0033891.1 MGP_CASTEiJ_G0018848.1 mouse_genomes_project 11 125718098 125739438 - MGP_CASTEiJ_P0033891 Wdr45b protein_coding protein_coding MGP_CASTEiJ_T0033892.1 MGP_CASTEiJ_G0018848.1 mouse_genomes_project 11 125732081 125739446 - Wdr45b protein_coding retained_intron MGP_CASTEiJ_T0031545.1 MGP_CASTEiJ_G0018343.1 mouse_genomes_project 11 99935259 99975673 + MGP_CASTEiJ_P0031545 Mllt6 protein_coding protein_coding MGP_CASTEiJ_T0031546.1 MGP_CASTEiJ_G0018343.1 mouse_genomes_project 11 99952211 99972727 + Mllt6 protein_coding processed_transcript MGP_CASTEiJ_T0031547.1 MGP_CASTEiJ_G0018343.1 mouse_genomes_project 11 99952257 99961994 + Mllt6 protein_coding processed_transcript MGP_CASTEiJ_T0031548.1 MGP_CASTEiJ_G0018343.1 mouse_genomes_project 11 99964497 99966810 + Mllt6 protein_coding processed_transcript MGP_CASTEiJ_T0031549.1 MGP_CASTEiJ_G0018343.1 mouse_genomes_project 11 99964497 99966810 + Mllt6 protein_coding processed_transcript MGP_CASTEiJ_T0003138.1 MGP_CASTEiJ_G0002916.1 mouse_genomes_project 11 87065656 87081988 - Bcas3os1 antisense antisense MGP_CASTEiJ_T0003139.1 MGP_CASTEiJ_G0002916.1 mouse_genomes_project 11 87066689 87081988 - Bcas3os1 antisense antisense MGP_CASTEiJ_T0099243.1 MGP_CASTEiJ_G0036156.1 mouse_genomes_project 11 69296511 69296616 + Gm23194 snRNA snRNA MGP_CASTEiJ_T0031016.1 MGP_CASTEiJ_G0018217.1 mouse_genomes_project 11 89099110 89143785 + MGP_CASTEiJ_P0031016 Hsf5 protein_coding protein_coding MGP_CASTEiJ_T0030237.1 MGP_CASTEiJ_G0018036.1 mouse_genomes_project 11 76780119 76817263 + Fam57a protein_coding processed_transcript MGP_CASTEiJ_T0030238.1 MGP_CASTEiJ_G0018036.1 mouse_genomes_project 11 76803904 76810073 + MGP_CASTEiJ_P0030238 Fam57a protein_coding protein_coding MGP_CASTEiJ_T0030239.1 MGP_CASTEiJ_G0018036.1 mouse_genomes_project 11 76803962 76804924 + Fam57a protein_coding retained_intron MGP_CASTEiJ_T0030240.1 MGP_CASTEiJ_G0018036.1 mouse_genomes_project 11 76803999 76811049 + MGP_CASTEiJ_P0030240 Fam57a protein_coding protein_coding MGP_CASTEiJ_T0031850.1 MGP_CASTEiJ_G0018454.1 mouse_genomes_project 11 102970605 102974183 + MGP_CASTEiJ_P0031850 Eif1 protein_coding protein_coding MGP_CASTEiJ_T0031851.1 MGP_CASTEiJ_G0018454.1 mouse_genomes_project 11 102970611 102971984 + MGP_CASTEiJ_P0031851 Eif1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031852.1 MGP_CASTEiJ_G0018454.1 mouse_genomes_project 11 102970716 102986914 + MGP_CASTEiJ_P0031852 Eif1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031853.1 MGP_CASTEiJ_G0018454.1 mouse_genomes_project 11 102970831 102971612 + MGP_CASTEiJ_P0031853 Eif1 protein_coding protein_coding MGP_CASTEiJ_T0100475.1 MGP_CASTEiJ_G0037388.1 mouse_genomes_project 11 105731759 105731896 + Gm22683 snoRNA snoRNA MGP_CASTEiJ_T0031054.1 MGP_CASTEiJ_G0018225.1 mouse_genomes_project 11 89399663 89400756 - MGP_CASTEiJ_P0031054 protein_coding protein_coding MGP_CASTEiJ_T0029263.1 MGP_CASTEiJ_G0017808.1 mouse_genomes_project 11 68191245 68399987 - MGP_CASTEiJ_P0029263 Ntn1 protein_coding protein_coding MGP_CASTEiJ_T0029264.1 MGP_CASTEiJ_G0017808.1 mouse_genomes_project 11 68191245 68385211 - MGP_CASTEiJ_P0029264 Ntn1 protein_coding protein_coding MGP_CASTEiJ_T0029265.1 MGP_CASTEiJ_G0017808.1 mouse_genomes_project 11 68384028 68385407 - MGP_CASTEiJ_P0029265 Ntn1 protein_coding protein_coding MGP_CASTEiJ_T0033011.1 MGP_CASTEiJ_G0018690.1 mouse_genomes_project 11 119298183 119310861 + MGP_CASTEiJ_P0033011 Kctd2 protein_coding protein_coding MGP_CASTEiJ_T0033012.1 MGP_CASTEiJ_G0018690.1 mouse_genomes_project 11 119298205 119310861 + MGP_CASTEiJ_P0033012 Kctd2 protein_coding protein_coding MGP_CASTEiJ_T0033013.1 MGP_CASTEiJ_G0018690.1 mouse_genomes_project 11 119298237 119309628 + MGP_CASTEiJ_P0033013 Kctd2 protein_coding protein_coding MGP_CASTEiJ_T0033014.1 MGP_CASTEiJ_G0018690.1 mouse_genomes_project 11 119298367 119300488 + Kctd2 protein_coding retained_intron MGP_CASTEiJ_T0033015.1 MGP_CASTEiJ_G0018690.1 mouse_genomes_project 11 119308939 119309788 + Kctd2 protein_coding processed_transcript MGP_CASTEiJ_T0102005.1 MGP_CASTEiJ_G0038730.1 mouse_genomes_project 11 96868777 96869502 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102002.1 MGP_CASTEiJ_G0038727.1 mouse_genomes_project 11 96722319 96905392 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0012266.1 MGP_CASTEiJ_G0010429.1 mouse_genomes_project 11 57760329 57760548 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009443.1 MGP_CASTEiJ_G0007631.1 mouse_genomes_project 11 64926319 64926418 - Gm25991 miRNA miRNA MGP_CASTEiJ_T0031308.1 MGP_CASTEiJ_G0018284.1 mouse_genomes_project 11 97089341 97104374 - MGP_CASTEiJ_P0031308 Pdk2 protein_coding protein_coding MGP_CASTEiJ_T0031309.1 MGP_CASTEiJ_G0018284.1 mouse_genomes_project 11 97090049 97091669 - Pdk2 protein_coding processed_transcript MGP_CASTEiJ_T0031310.1 MGP_CASTEiJ_G0018284.1 mouse_genomes_project 11 97091698 97104425 - MGP_CASTEiJ_P0031310 Pdk2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031311.1 MGP_CASTEiJ_G0018284.1 mouse_genomes_project 11 97091820 97092520 - Pdk2 protein_coding processed_transcript MGP_CASTEiJ_T0031312.1 MGP_CASTEiJ_G0018284.1 mouse_genomes_project 11 97092743 97103579 - Pdk2 protein_coding processed_transcript MGP_CASTEiJ_T0031313.1 MGP_CASTEiJ_G0018284.1 mouse_genomes_project 11 97094960 97103895 - Pdk2 protein_coding processed_transcript MGP_CASTEiJ_T0028823.1 MGP_CASTEiJ_G0017718.1 mouse_genomes_project 11 59346257 59384950 + Nt5m protein_coding processed_transcript MGP_CASTEiJ_T0028824.1 MGP_CASTEiJ_G0017718.1 mouse_genomes_project 11 59346257 59389383 + Nt5m protein_coding processed_transcript MGP_CASTEiJ_T0028825.1 MGP_CASTEiJ_G0017718.1 mouse_genomes_project 11 59354893 59384950 + MGP_CASTEiJ_P0028825 Nt5m protein_coding protein_coding MGP_CASTEiJ_T0028826.1 MGP_CASTEiJ_G0017718.1 mouse_genomes_project 11 59354924 59384950 + Nt5m protein_coding processed_transcript MGP_CASTEiJ_T0031599.1 MGP_CASTEiJ_G0018354.1 mouse_genomes_project 11 100236749 100301238 - MGP_CASTEiJ_P0031599 Plxdc1 protein_coding protein_coding MGP_CASTEiJ_T0031600.1 MGP_CASTEiJ_G0018354.1 mouse_genomes_project 11 100237167 100301193 - MGP_CASTEiJ_P0031600 Plxdc1 protein_coding protein_coding MGP_CASTEiJ_T0031601.1 MGP_CASTEiJ_G0018354.1 mouse_genomes_project 11 100251543 100301227 - Plxdc1 protein_coding processed_transcript MGP_CASTEiJ_T0031602.1 MGP_CASTEiJ_G0018354.1 mouse_genomes_project 11 100293470 100301224 - MGP_CASTEiJ_P0031602 Plxdc1 protein_coding protein_coding MGP_CASTEiJ_T0032934.1 MGP_CASTEiJ_G0018669.1 mouse_genomes_project 11 118765067 118779074 - MGP_CASTEiJ_P0032934 Cd300lb protein_coding protein_coding MGP_CASTEiJ_T0032935.1 MGP_CASTEiJ_G0018669.1 mouse_genomes_project 11 118765067 118779059 - MGP_CASTEiJ_P0032935 Cd300lb protein_coding protein_coding MGP_CASTEiJ_T0032936.1 MGP_CASTEiJ_G0018669.1 mouse_genomes_project 11 118773059 118778975 - Cd300lb protein_coding processed_transcript MGP_CASTEiJ_T0032995.1 MGP_CASTEiJ_G0018688.1 mouse_genomes_project 11 119280643 119289537 + MGP_CASTEiJ_P0032995 Ict1 protein_coding protein_coding MGP_CASTEiJ_T0032996.1 MGP_CASTEiJ_G0018688.1 mouse_genomes_project 11 119280645 119289525 + MGP_CASTEiJ_P0032996 Ict1 protein_coding protein_coding MGP_CASTEiJ_T0032997.1 MGP_CASTEiJ_G0018688.1 mouse_genomes_project 11 119280648 119287781 + MGP_CASTEiJ_P0032997 Ict1 protein_coding protein_coding MGP_CASTEiJ_T0032998.1 MGP_CASTEiJ_G0018688.1 mouse_genomes_project 11 119280658 119286934 + Ict1 protein_coding retained_intron MGP_CASTEiJ_T0032999.1 MGP_CASTEiJ_G0018688.1 mouse_genomes_project 11 119280662 119287142 + MGP_CASTEiJ_P0032999 Ict1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033000.1 MGP_CASTEiJ_G0018688.1 mouse_genomes_project 11 119280668 119287621 + Ict1 protein_coding processed_transcript MGP_CASTEiJ_T0033001.1 MGP_CASTEiJ_G0018688.1 mouse_genomes_project 11 119280673 119287132 + Ict1 protein_coding retained_intron MGP_CASTEiJ_T0033002.1 MGP_CASTEiJ_G0018688.1 mouse_genomes_project 11 119280713 119287586 + Ict1 protein_coding processed_transcript MGP_CASTEiJ_T0033003.1 MGP_CASTEiJ_G0018688.1 mouse_genomes_project 11 119286741 119287581 + Ict1 protein_coding retained_intron MGP_CASTEiJ_T0033004.1 MGP_CASTEiJ_G0018688.1 mouse_genomes_project 11 119287040 119287770 + Ict1 protein_coding retained_intron MGP_CASTEiJ_T0027113.1 MGP_CASTEiJ_G0017290.1 mouse_genomes_project 11 951747 973184 - MGP_CASTEiJ_P0027113 Sec14l2 protein_coding protein_coding MGP_CASTEiJ_T0027114.1 MGP_CASTEiJ_G0017290.1 mouse_genomes_project 11 952484 973049 - Sec14l2 protein_coding processed_transcript MGP_CASTEiJ_T0027115.1 MGP_CASTEiJ_G0017290.1 mouse_genomes_project 11 952484 963623 - Sec14l2 protein_coding processed_transcript MGP_CASTEiJ_T0027116.1 MGP_CASTEiJ_G0017290.1 mouse_genomes_project 11 957900 963339 - Sec14l2 protein_coding processed_transcript MGP_CASTEiJ_T0027117.1 MGP_CASTEiJ_G0017290.1 mouse_genomes_project 11 965540 977769 - Sec14l2 protein_coding processed_transcript MGP_CASTEiJ_T0027118.1 MGP_CASTEiJ_G0017290.1 mouse_genomes_project 11 970833 973106 - Sec14l2 protein_coding processed_transcript MGP_CASTEiJ_T0006109.1 MGP_CASTEiJ_G0005115.1 mouse_genomes_project 11 72029362 72031402 - Gm12325 lincRNA lincRNA MGP_CASTEiJ_T0003227.1 MGP_CASTEiJ_G0002986.1 mouse_genomes_project 11 113327333 113329159 + Gm11697 antisense antisense MGP_CASTEiJ_T0033860.1 MGP_CASTEiJ_G0018840.1 mouse_genomes_project 11 125499106 125501572 - MGP_CASTEiJ_P0033860 Tex19.2 protein_coding protein_coding MGP_CASTEiJ_T0099272.1 MGP_CASTEiJ_G0036185.1 mouse_genomes_project 11 100842343 100842474 - Gm25106 snRNA snRNA MGP_CASTEiJ_T0027092.1 MGP_CASTEiJ_G0017285.1 mouse_genomes_project 11 814234 830066 + MGP_CASTEiJ_P0027092 Pes1 protein_coding protein_coding MGP_CASTEiJ_T0027093.1 MGP_CASTEiJ_G0017285.1 mouse_genomes_project 11 814268 820985 + Pes1 protein_coding processed_transcript MGP_CASTEiJ_T0027094.1 MGP_CASTEiJ_G0017285.1 mouse_genomes_project 11 814308 827053 + Pes1 protein_coding processed_transcript MGP_CASTEiJ_T0029844.1 MGP_CASTEiJ_G0017928.1 mouse_genomes_project 11 71214725 71219920 - MGP_CASTEiJ_P0029844 C1qbp protein_coding protein_coding MGP_CASTEiJ_T0029845.1 MGP_CASTEiJ_G0017928.1 mouse_genomes_project 11 71214737 71215760 - C1qbp protein_coding retained_intron MGP_CASTEiJ_T0029846.1 MGP_CASTEiJ_G0017928.1 mouse_genomes_project 11 71217895 71219901 - C1qbp protein_coding retained_intron MGP_CASTEiJ_T0003126.1 MGP_CASTEiJ_G0002907.1 mouse_genomes_project 11 80535372 80540270 - Rab11fip4os2 antisense antisense MGP_CASTEiJ_T0003127.1 MGP_CASTEiJ_G0002907.1 mouse_genomes_project 11 80539053 80540315 - Rab11fip4os2 antisense antisense MGP_CASTEiJ_T0012198.1 MGP_CASTEiJ_G0010361.1 mouse_genomes_project 11 27695389 27695861 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099229.1 MGP_CASTEiJ_G0036142.1 mouse_genomes_project 11 38161572 38161717 + Gm24192 snRNA snRNA MGP_CASTEiJ_T0010966.1 MGP_CASTEiJ_G0009154.1 mouse_genomes_project 11 18640772 18641041 - Gm22600 misc_RNA misc_RNA MGP_CASTEiJ_T0033807.1 MGP_CASTEiJ_G0018832.1 mouse_genomes_project 11 125151069 125158272 - MGP_CASTEiJ_P0033807 Dus1l protein_coding protein_coding MGP_CASTEiJ_T0033808.1 MGP_CASTEiJ_G0018832.1 mouse_genomes_project 11 125151070 125152315 - Dus1l protein_coding retained_intron MGP_CASTEiJ_T0033809.1 MGP_CASTEiJ_G0018832.1 mouse_genomes_project 11 125151070 125158264 - MGP_CASTEiJ_P0033809 Dus1l protein_coding protein_coding MGP_CASTEiJ_T0033810.1 MGP_CASTEiJ_G0018832.1 mouse_genomes_project 11 125151070 125158264 - MGP_CASTEiJ_P0033810 Dus1l protein_coding protein_coding MGP_CASTEiJ_T0033811.1 MGP_CASTEiJ_G0018832.1 mouse_genomes_project 11 125151072 125151719 - Dus1l protein_coding retained_intron MGP_CASTEiJ_T0033812.1 MGP_CASTEiJ_G0018832.1 mouse_genomes_project 11 125151074 125158258 - Dus1l protein_coding retained_intron MGP_CASTEiJ_T0033813.1 MGP_CASTEiJ_G0018832.1 mouse_genomes_project 11 125151074 125158267 - MGP_CASTEiJ_P0033813 Dus1l protein_coding protein_coding MGP_CASTEiJ_T0033814.1 MGP_CASTEiJ_G0018832.1 mouse_genomes_project 11 125154641 125158246 - MGP_CASTEiJ_P0033814 Dus1l protein_coding protein_coding MGP_CASTEiJ_T0033815.1 MGP_CASTEiJ_G0018832.1 mouse_genomes_project 11 125155712 125158262 - MGP_CASTEiJ_P0033815 Dus1l protein_coding protein_coding MGP_CASTEiJ_T0031495.1 MGP_CASTEiJ_G0018333.1 mouse_genomes_project 11 99372192 99385797 - MGP_CASTEiJ_P0031495 Tbkbp1 protein_coding protein_coding MGP_CASTEiJ_T0031496.1 MGP_CASTEiJ_G0018333.1 mouse_genomes_project 11 99372194 99385797 - MGP_CASTEiJ_P0031496 Tbkbp1 protein_coding protein_coding MGP_CASTEiJ_T0031497.1 MGP_CASTEiJ_G0018333.1 mouse_genomes_project 11 99372198 99386132 - MGP_CASTEiJ_P0031497 Tbkbp1 protein_coding protein_coding MGP_CASTEiJ_T0031498.1 MGP_CASTEiJ_G0018333.1 mouse_genomes_project 11 99373120 99387128 - MGP_CASTEiJ_P0031498 Tbkbp1 protein_coding protein_coding MGP_CASTEiJ_T0031499.1 MGP_CASTEiJ_G0018333.1 mouse_genomes_project 11 99374430 99386134 - MGP_CASTEiJ_P0031499 Tbkbp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009453.1 MGP_CASTEiJ_G0007641.1 mouse_genomes_project 11 70140870 70140959 + Mir324 miRNA miRNA MGP_CASTEiJ_T0003121.1 MGP_CASTEiJ_G0002902.1 mouse_genomes_project 11 79031316 79031645 - Gm11192 antisense antisense MGP_CASTEiJ_T0003136.1 MGP_CASTEiJ_G0002915.1 mouse_genomes_project 11 86570393 86570839 + Appbp2os antisense pseudogene MGP_CASTEiJ_T0003137.1 MGP_CASTEiJ_G0002915.1 mouse_genomes_project 11 86570785 86573893 + Appbp2os antisense antisense MGP_CASTEiJ_T0033740.1 MGP_CASTEiJ_G0018820.1 mouse_genomes_project 11 124968091 124976554 - MGP_CASTEiJ_P0033740 Mafg protein_coding protein_coding MGP_CASTEiJ_T0033741.1 MGP_CASTEiJ_G0018820.1 mouse_genomes_project 11 124971559 124976367 - MGP_CASTEiJ_P0033741 Mafg protein_coding unknown_likely_coding MGP_CASTEiJ_T0033742.1 MGP_CASTEiJ_G0018820.1 mouse_genomes_project 11 124971987 124973778 - MGP_CASTEiJ_P0033742 Mafg protein_coding protein_coding MGP_CASTEiJ_T0033743.1 MGP_CASTEiJ_G0018820.1 mouse_genomes_project 11 124972121 124973617 - MGP_CASTEiJ_P0033743 Mafg protein_coding protein_coding MGP_CASTEiJ_T0033744.1 MGP_CASTEiJ_G0018820.1 mouse_genomes_project 11 124972212 124973129 - MGP_CASTEiJ_P0033744 Mafg protein_coding protein_coding MGP_CASTEiJ_T0033745.1 MGP_CASTEiJ_G0018820.1 mouse_genomes_project 11 124974204 124976510 - Mafg protein_coding processed_transcript MGP_CASTEiJ_T0032462.1 MGP_CASTEiJ_G0018568.1 mouse_genomes_project 11 106302179 106351087 - MGP_CASTEiJ_P0032462 Plekhm1 protein_coding protein_coding MGP_CASTEiJ_T0032463.1 MGP_CASTEiJ_G0018568.1 mouse_genomes_project 11 106304540 106333219 - MGP_CASTEiJ_P0032463 Plekhm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032464.1 MGP_CASTEiJ_G0018568.1 mouse_genomes_project 11 106304806 106351093 - MGP_CASTEiJ_P0032464 Plekhm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030460.1 MGP_CASTEiJ_G0018079.1 mouse_genomes_project 11 79012333 79014583 + 2610507B11Rik protein_coding processed_transcript MGP_CASTEiJ_T0030461.1 MGP_CASTEiJ_G0018079.1 mouse_genomes_project 11 79012333 79046148 + MGP_CASTEiJ_P0030461 2610507B11Rik protein_coding protein_coding MGP_CASTEiJ_T0030462.1 MGP_CASTEiJ_G0018079.1 mouse_genomes_project 11 79012398 79016161 + MGP_CASTEiJ_P0030462 2610507B11Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0030463.1 MGP_CASTEiJ_G0018079.1 mouse_genomes_project 11 79013035 79014517 + 2610507B11Rik protein_coding retained_intron MGP_CASTEiJ_T0030464.1 MGP_CASTEiJ_G0018079.1 mouse_genomes_project 11 79016692 79018736 + 2610507B11Rik protein_coding retained_intron MGP_CASTEiJ_T0030465.1 MGP_CASTEiJ_G0018079.1 mouse_genomes_project 11 79023054 79024508 + 2610507B11Rik protein_coding retained_intron MGP_CASTEiJ_T0030466.1 MGP_CASTEiJ_G0018079.1 mouse_genomes_project 11 79024234 79025967 + MGP_CASTEiJ_P0030466 2610507B11Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030467.1 MGP_CASTEiJ_G0018079.1 mouse_genomes_project 11 79039005 79041575 + 2610507B11Rik protein_coding retained_intron MGP_CASTEiJ_T0030468.1 MGP_CASTEiJ_G0018079.1 mouse_genomes_project 11 79041531 79043107 + 2610507B11Rik protein_coding retained_intron MGP_CASTEiJ_T0030734.1 MGP_CASTEiJ_G0018146.1 mouse_genomes_project 11 84184875 84194131 - MGP_CASTEiJ_P0030734 protein_coding protein_coding MGP_CASTEiJ_T0003058.1 MGP_CASTEiJ_G0002850.1 mouse_genomes_project 11 53485849 53498743 - Gm12224 antisense antisense MGP_CASTEiJ_T0003059.1 MGP_CASTEiJ_G0002850.1 mouse_genomes_project 11 53490097 53498694 - Gm12224 antisense antisense MGP_CASTEiJ_T0027823.1 MGP_CASTEiJ_G0017441.1 mouse_genomes_project 11 29893253 29908121 + MGP_CASTEiJ_P0027823 4930524B15Rik protein_coding protein_coding MGP_CASTEiJ_T0006175.1 MGP_CASTEiJ_G0005160.1 mouse_genomes_project 11 105484387 105492117 - lincRNA lincRNA MGP_CASTEiJ_T0006176.1 MGP_CASTEiJ_G0005160.1 mouse_genomes_project 11 105488939 105492067 - lincRNA lincRNA MGP_CASTEiJ_T0031819.1 MGP_CASTEiJ_G0018432.1 mouse_genomes_project 11 102505722 102517958 + MGP_CASTEiJ_P0031819 protein_coding protein_coding MGP_CASTEiJ_T0029144.1 MGP_CASTEiJ_G0017777.1 mouse_genomes_project 11 62888804 62920361 + MGP_CASTEiJ_P0029144 Pmp22 protein_coding protein_coding MGP_CASTEiJ_T0029145.1 MGP_CASTEiJ_G0017777.1 mouse_genomes_project 11 62891333 62920362 + MGP_CASTEiJ_P0029145 Pmp22 protein_coding protein_coding MGP_CASTEiJ_T0029146.1 MGP_CASTEiJ_G0017777.1 mouse_genomes_project 11 62892385 62919302 + MGP_CASTEiJ_P0029146 Pmp22 protein_coding protein_coding MGP_CASTEiJ_T0029147.1 MGP_CASTEiJ_G0017777.1 mouse_genomes_project 11 62892619 62894307 + Pmp22 protein_coding processed_transcript MGP_CASTEiJ_T0029148.1 MGP_CASTEiJ_G0017777.1 mouse_genomes_project 11 62892885 62919383 + MGP_CASTEiJ_P0029148 Pmp22 protein_coding protein_coding MGP_CASTEiJ_T0006201.1 MGP_CASTEiJ_G0005180.1 mouse_genomes_project 11 119941160 119948880 - B230344G16Rik lincRNA lincRNA MGP_CASTEiJ_T0100456.1 MGP_CASTEiJ_G0037369.1 mouse_genomes_project 11 75411085 75411176 + Gm22771 snoRNA snoRNA MGP_CASTEiJ_T0016447.1 MGP_CASTEiJ_G0014478.1 mouse_genomes_project 11 32100065 32225943 - 4930469K13Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016523.1 MGP_CASTEiJ_G0014521.1 mouse_genomes_project 11 103003350 103005866 - processed_transcript processed_transcript MGP_CASTEiJ_T0032827.1 MGP_CASTEiJ_G0018646.1 mouse_genomes_project 11 113499139 113571139 - MGP_CASTEiJ_P0032827 Abca9 protein_coding protein_coding MGP_CASTEiJ_T0032828.1 MGP_CASTEiJ_G0018646.1 mouse_genomes_project 11 113558020 113570998 - Abca9 protein_coding processed_transcript MGP_CASTEiJ_T0027408.1 MGP_CASTEiJ_G0017354.1 mouse_genomes_project 11 6144515 6160001 - MGP_CASTEiJ_P0027408 Sun3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027409.1 MGP_CASTEiJ_G0017354.1 mouse_genomes_project 11 6144515 6180721 - MGP_CASTEiJ_P0027409 Sun3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027410.1 MGP_CASTEiJ_G0017354.1 mouse_genomes_project 11 6144518 6168081 - MGP_CASTEiJ_P0027410 Sun3 protein_coding protein_coding MGP_CASTEiJ_T0032168.1 MGP_CASTEiJ_G0018518.1 mouse_genomes_project 11 104655341 104675075 - MGP_CASTEiJ_P0032168 Meox1 protein_coding protein_coding MGP_CASTEiJ_T0099285.1 MGP_CASTEiJ_G0036198.1 mouse_genomes_project 11 112849790 112849901 - Gm22378 snRNA snRNA MGP_CASTEiJ_T0033920.1 MGP_CASTEiJ_G0018857.1 mouse_genomes_project 11 126331534 126344422 - MGP_CASTEiJ_P0033920 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0003162.1 MGP_CASTEiJ_G0002933.1 mouse_genomes_project 11 98140553 98143715 + Gm29202 antisense antisense MGP_CASTEiJ_T0033465.1 MGP_CASTEiJ_G0018771.1 mouse_genomes_project 11 122605200 122620310 + MGP_CASTEiJ_P0033465 C1qtnf1 protein_coding protein_coding MGP_CASTEiJ_T0033466.1 MGP_CASTEiJ_G0018771.1 mouse_genomes_project 11 122605430 122626447 + MGP_CASTEiJ_P0033466 C1qtnf1 protein_coding protein_coding MGP_CASTEiJ_T0033467.1 MGP_CASTEiJ_G0018771.1 mouse_genomes_project 11 122610732 122626447 + MGP_CASTEiJ_P0033467 C1qtnf1 protein_coding protein_coding MGP_CASTEiJ_T0033468.1 MGP_CASTEiJ_G0018771.1 mouse_genomes_project 11 122619935 122620317 + MGP_CASTEiJ_P0033468 C1qtnf1 protein_coding protein_coding MGP_CASTEiJ_T0031296.1 MGP_CASTEiJ_G0018280.1 mouse_genomes_project 11 97017228 97031732 - MGP_CASTEiJ_P0031296 Sgca protein_coding protein_coding MGP_CASTEiJ_T0031297.1 MGP_CASTEiJ_G0018280.1 mouse_genomes_project 11 97017234 97026122 - MGP_CASTEiJ_P0031297 Sgca protein_coding protein_coding MGP_CASTEiJ_T0031298.1 MGP_CASTEiJ_G0018280.1 mouse_genomes_project 11 97017259 97028875 - MGP_CASTEiJ_P0031298 Sgca protein_coding protein_coding MGP_CASTEiJ_T0031299.1 MGP_CASTEiJ_G0018280.1 mouse_genomes_project 11 97017648 97031732 - MGP_CASTEiJ_P0031299 Sgca protein_coding protein_coding MGP_CASTEiJ_T0031301.1 MGP_CASTEiJ_G0018280.1 mouse_genomes_project 11 97027670 97028901 - MGP_CASTEiJ_P0031301 Sgca protein_coding protein_coding MGP_CASTEiJ_T0028729.1 MGP_CASTEiJ_G0017693.1 mouse_genomes_project 11 58379175 58385143 - MGP_CASTEiJ_P0028729 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028730.1 MGP_CASTEiJ_G0017693.1 mouse_genomes_project 11 58379181 58385567 - MGP_CASTEiJ_P0028730 protein_coding protein_coding MGP_CASTEiJ_T0003148.1 MGP_CASTEiJ_G0002923.1 mouse_genomes_project 11 90460771 90496414 + 4930556N13Rik antisense antisense MGP_CASTEiJ_T0030785.1 MGP_CASTEiJ_G0018167.1 mouse_genomes_project 11 84937177 84941409 + MGP_CASTEiJ_P0030785 Wfdc17 protein_coding protein_coding MGP_CASTEiJ_T0030685.1 MGP_CASTEiJ_G0018137.1 mouse_genomes_project 11 83797760 83851587 - MGP_CASTEiJ_P0030685 Cct6b protein_coding protein_coding MGP_CASTEiJ_T0030686.1 MGP_CASTEiJ_G0018137.1 mouse_genomes_project 11 83797760 83851602 - MGP_CASTEiJ_P0030686 Cct6b protein_coding protein_coding MGP_CASTEiJ_T0006008.1 MGP_CASTEiJ_G0005029.1 mouse_genomes_project 11 4346086 4366073 - Gm11986 lincRNA lincRNA MGP_CASTEiJ_T0006139.1 MGP_CASTEiJ_G0005135.1 mouse_genomes_project 11 88523138 88523840 - Gm11479 lincRNA lincRNA MGP_CASTEiJ_T0031121.1 MGP_CASTEiJ_G0018242.1 mouse_genomes_project 11 90958956 90960653 - MGP_CASTEiJ_P0031121 Nog protein_coding protein_coding MGP_CASTEiJ_T0031891.1 MGP_CASTEiJ_G0018463.1 mouse_genomes_project 11 103151501 103202530 - MGP_CASTEiJ_P0031891 Acly protein_coding protein_coding MGP_CASTEiJ_T0031892.1 MGP_CASTEiJ_G0018463.1 mouse_genomes_project 11 103151504 103202530 - MGP_CASTEiJ_P0031892 Acly protein_coding protein_coding MGP_CASTEiJ_T0031893.1 MGP_CASTEiJ_G0018463.1 mouse_genomes_project 11 103151506 103198132 - MGP_CASTEiJ_P0031893 Acly protein_coding protein_coding MGP_CASTEiJ_T0031894.1 MGP_CASTEiJ_G0018463.1 mouse_genomes_project 11 103152378 103154659 - Acly protein_coding processed_transcript MGP_CASTEiJ_T0031895.1 MGP_CASTEiJ_G0018463.1 mouse_genomes_project 11 103157317 103169249 - Acly protein_coding processed_transcript MGP_CASTEiJ_T0031896.1 MGP_CASTEiJ_G0018463.1 mouse_genomes_project 11 103172845 103173694 - Acly protein_coding processed_transcript MGP_CASTEiJ_T0031897.1 MGP_CASTEiJ_G0018463.1 mouse_genomes_project 11 103175174 103202399 - MGP_CASTEiJ_P0031897 Acly protein_coding protein_coding MGP_CASTEiJ_T0012206.1 MGP_CASTEiJ_G0010369.1 mouse_genomes_project 11 28850072 28851049 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012244.1 MGP_CASTEiJ_G0010407.1 mouse_genomes_project 11 49967402 49968641 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029726.1 MGP_CASTEiJ_G0017910.1 mouse_genomes_project 11 70719227 70720348 + MGP_CASTEiJ_P0029726 Pld2 protein_coding protein_coding MGP_CASTEiJ_T0029727.1 MGP_CASTEiJ_G0017910.1 mouse_genomes_project 11 70719469 70740301 + MGP_CASTEiJ_P0029727 Pld2 protein_coding protein_coding MGP_CASTEiJ_T0029728.1 MGP_CASTEiJ_G0017910.1 mouse_genomes_project 11 70719506 70740301 + MGP_CASTEiJ_P0029728 Pld2 protein_coding protein_coding MGP_CASTEiJ_T0029729.1 MGP_CASTEiJ_G0017910.1 mouse_genomes_project 11 70719519 70725624 + MGP_CASTEiJ_P0029729 Pld2 protein_coding protein_coding MGP_CASTEiJ_T0029730.1 MGP_CASTEiJ_G0017910.1 mouse_genomes_project 11 70734296 70739294 + Pld2 protein_coding retained_intron MGP_CASTEiJ_T0029731.1 MGP_CASTEiJ_G0017910.1 mouse_genomes_project 11 70736928 70739418 + MGP_CASTEiJ_P0029731 Pld2 protein_coding protein_coding MGP_CASTEiJ_T0029732.1 MGP_CASTEiJ_G0017910.1 mouse_genomes_project 11 70737093 70739668 + Pld2 protein_coding retained_intron MGP_CASTEiJ_T0098814.1 MGP_CASTEiJ_G0035744.1 mouse_genomes_project 11 33384395 33385027 + Gm12122 sense_intronic sense_intronic MGP_CASTEiJ_T0012422.1 MGP_CASTEiJ_G0010585.1 mouse_genomes_project 11 120568899 120569133 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027992.1 MGP_CASTEiJ_G0017486.1 mouse_genomes_project 11 40782762 41016080 + MGP_CASTEiJ_P0027992 Gabrb2 protein_coding protein_coding MGP_CASTEiJ_T0027993.1 MGP_CASTEiJ_G0017486.1 mouse_genomes_project 11 40782769 40786886 + Gabrb2 protein_coding processed_transcript MGP_CASTEiJ_T0027994.1 MGP_CASTEiJ_G0017486.1 mouse_genomes_project 11 40785525 40856274 + Gabrb2 protein_coding processed_transcript MGP_CASTEiJ_T0027995.1 MGP_CASTEiJ_G0017486.1 mouse_genomes_project 11 40785556 40908503 + Gabrb2 protein_coding processed_transcript MGP_CASTEiJ_T0027996.1 MGP_CASTEiJ_G0017486.1 mouse_genomes_project 11 40785596 41013940 + MGP_CASTEiJ_P0027996 Gabrb2 protein_coding protein_coding MGP_CASTEiJ_T0027534.1 MGP_CASTEiJ_G0017383.1 mouse_genomes_project 11 17944766 18065641 + MGP_CASTEiJ_P0027534 Sertad2 protein_coding protein_coding MGP_CASTEiJ_T0027535.1 MGP_CASTEiJ_G0017383.1 mouse_genomes_project 11 18042155 18065641 + MGP_CASTEiJ_P0027535 Sertad2 protein_coding protein_coding MGP_CASTEiJ_T0027536.1 MGP_CASTEiJ_G0017383.1 mouse_genomes_project 11 18059769 18061680 + MGP_CASTEiJ_P0027536 Sertad2 protein_coding protein_coding MGP_CASTEiJ_T0006177.1 MGP_CASTEiJ_G0005161.1 mouse_genomes_project 11 105765343 105997899 + Gm26668 lincRNA lincRNA MGP_CASTEiJ_T0030666.1 MGP_CASTEiJ_G0018128.1 mouse_genomes_project 11 82889567 82895311 + 5530401A14Rik protein_coding processed_transcript MGP_CASTEiJ_T0030667.1 MGP_CASTEiJ_G0018128.1 mouse_genomes_project 11 82889573 82926342 + MGP_CASTEiJ_P0030667 5530401A14Rik protein_coding protein_coding MGP_CASTEiJ_T0003086.1 MGP_CASTEiJ_G0002874.1 mouse_genomes_project 11 62322755 62324751 + Lrrc75aos2 antisense antisense MGP_CASTEiJ_T0003087.1 MGP_CASTEiJ_G0002874.1 mouse_genomes_project 11 62322756 62324013 + Lrrc75aos2 antisense antisense MGP_CASTEiJ_T0033505.1 MGP_CASTEiJ_G0018779.1 mouse_genomes_project 11 123453785 123456920 + Ccdc40 protein_coding processed_transcript MGP_CASTEiJ_T0033506.1 MGP_CASTEiJ_G0018779.1 mouse_genomes_project 11 123453791 123456836 + Ccdc40 protein_coding processed_transcript MGP_CASTEiJ_T0033507.1 MGP_CASTEiJ_G0018779.1 mouse_genomes_project 11 123454273 123494086 + MGP_CASTEiJ_P0033507 Ccdc40 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033508.1 MGP_CASTEiJ_G0018779.1 mouse_genomes_project 11 123454315 123489850 + MGP_CASTEiJ_P0033508 Ccdc40 protein_coding protein_coding MGP_CASTEiJ_T0033509.1 MGP_CASTEiJ_G0018779.1 mouse_genomes_project 11 123454320 123494738 + MGP_CASTEiJ_P0033509 Ccdc40 protein_coding protein_coding MGP_CASTEiJ_T0033510.1 MGP_CASTEiJ_G0018779.1 mouse_genomes_project 11 123463908 123478749 + Ccdc40 protein_coding retained_intron MGP_CASTEiJ_T0033511.1 MGP_CASTEiJ_G0018779.1 mouse_genomes_project 11 123480487 123493929 + Ccdc40 protein_coding retained_intron MGP_CASTEiJ_T0033512.1 MGP_CASTEiJ_G0018779.1 mouse_genomes_project 11 123485856 123494728 + Ccdc40 protein_coding processed_transcript MGP_CASTEiJ_T0033513.1 MGP_CASTEiJ_G0018779.1 mouse_genomes_project 11 123486695 123490070 + Ccdc40 protein_coding retained_intron MGP_CASTEiJ_T0033514.1 MGP_CASTEiJ_G0018779.1 mouse_genomes_project 11 123489821 123493799 + Ccdc40 protein_coding retained_intron MGP_CASTEiJ_T0027791.1 MGP_CASTEiJ_G0017432.1 mouse_genomes_project 11 28400450 28576156 - MGP_CASTEiJ_P0027791 Acyp2 protein_coding protein_coding MGP_CASTEiJ_T0012395.1 MGP_CASTEiJ_G0010558.1 mouse_genomes_project 11 108084532 108085572 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027346.1 MGP_CASTEiJ_G0017339.1 mouse_genomes_project 11 3420765 3445289 - MGP_CASTEiJ_P0027346 H2afv protein_coding unknown_likely_coding MGP_CASTEiJ_T0027347.1 MGP_CASTEiJ_G0017339.1 mouse_genomes_project 11 3427185 3445266 - MGP_CASTEiJ_P0027347 H2afv protein_coding protein_coding MGP_CASTEiJ_T0006157.1 MGP_CASTEiJ_G0005147.1 mouse_genomes_project 11 97296036 97298380 - Gm11515 lincRNA lincRNA MGP_CASTEiJ_T0032615.1 MGP_CASTEiJ_G0018604.1 mouse_genomes_project 11 109355607 109362559 + MGP_CASTEiJ_P0032615 Psmc5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032616.1 MGP_CASTEiJ_G0018604.1 mouse_genomes_project 11 109355607 109362559 + MGP_CASTEiJ_P0032616 Psmc5 protein_coding protein_coding MGP_CASTEiJ_T0003011.1 MGP_CASTEiJ_G0002809.1 mouse_genomes_project 11 3482317 3505785 + Gm11973 antisense antisense MGP_CASTEiJ_T0033515.1 MGP_CASTEiJ_G0018780.1 mouse_genomes_project 11 123498649 123516039 + MGP_CASTEiJ_P0033515 Gaa protein_coding protein_coding MGP_CASTEiJ_T0033516.1 MGP_CASTEiJ_G0018780.1 mouse_genomes_project 11 123498788 123516039 + MGP_CASTEiJ_P0033516 Gaa protein_coding protein_coding MGP_CASTEiJ_T0033517.1 MGP_CASTEiJ_G0018780.1 mouse_genomes_project 11 123498790 123504209 + MGP_CASTEiJ_P0033517 Gaa protein_coding protein_coding MGP_CASTEiJ_T0033518.1 MGP_CASTEiJ_G0018780.1 mouse_genomes_project 11 123501291 123505891 + Gaa protein_coding processed_transcript MGP_CASTEiJ_T0033519.1 MGP_CASTEiJ_G0018780.1 mouse_genomes_project 11 123505319 123509145 + MGP_CASTEiJ_P0033519 Gaa protein_coding protein_coding MGP_CASTEiJ_T0033520.1 MGP_CASTEiJ_G0018780.1 mouse_genomes_project 11 123505607 123506366 + MGP_CASTEiJ_P0033520 Gaa protein_coding protein_coding MGP_CASTEiJ_T0033521.1 MGP_CASTEiJ_G0018780.1 mouse_genomes_project 11 123508536 123512250 + MGP_CASTEiJ_P0033521 Gaa protein_coding protein_coding MGP_CASTEiJ_T0033522.1 MGP_CASTEiJ_G0018780.1 mouse_genomes_project 11 123509701 123510310 + Gaa protein_coding processed_transcript MGP_CASTEiJ_T0006112.1 MGP_CASTEiJ_G0005117.1 mouse_genomes_project 11 72267145 72278878 - 4930401O10Rik lincRNA lincRNA MGP_CASTEiJ_T0009516.1 MGP_CASTEiJ_G0007704.1 mouse_genomes_project 11 119327346 119327446 - Mir3968 miRNA miRNA MGP_CASTEiJ_T0033066.1 MGP_CASTEiJ_G0018700.1 mouse_genomes_project 11 119512916 119517799 - MGP_CASTEiJ_P0033066 Mif4gd protein_coding unknown_likely_coding MGP_CASTEiJ_T0033067.1 MGP_CASTEiJ_G0018700.1 mouse_genomes_project 11 119512921 119517918 - Mif4gd protein_coding processed_transcript MGP_CASTEiJ_T0033068.1 MGP_CASTEiJ_G0018700.1 mouse_genomes_project 11 119512921 119517878 - Mif4gd protein_coding processed_transcript MGP_CASTEiJ_T0033069.1 MGP_CASTEiJ_G0018700.1 mouse_genomes_project 11 119513152 119517869 - MGP_CASTEiJ_P0033069 Mif4gd protein_coding protein_coding MGP_CASTEiJ_T0033070.1 MGP_CASTEiJ_G0018700.1 mouse_genomes_project 11 119513210 119517821 - Mif4gd protein_coding processed_transcript MGP_CASTEiJ_T0033071.1 MGP_CASTEiJ_G0018700.1 mouse_genomes_project 11 119513420 119517890 - Mif4gd protein_coding processed_transcript MGP_CASTEiJ_T0033072.1 MGP_CASTEiJ_G0018700.1 mouse_genomes_project 11 119513515 119517117 - MGP_CASTEiJ_P0033072 Mif4gd protein_coding protein_coding MGP_CASTEiJ_T0033073.1 MGP_CASTEiJ_G0018700.1 mouse_genomes_project 11 119514180 119517895 - Mif4gd protein_coding processed_transcript MGP_CASTEiJ_T0033074.1 MGP_CASTEiJ_G0018700.1 mouse_genomes_project 11 119517092 119517911 - Mif4gd protein_coding processed_transcript MGP_CASTEiJ_T0027732.1 MGP_CASTEiJ_G0017422.1 mouse_genomes_project 11 27184086 27336706 + MGP_CASTEiJ_P0027732 protein_coding protein_coding MGP_CASTEiJ_T0027733.1 MGP_CASTEiJ_G0017422.1 mouse_genomes_project 11 27184205 27233373 + MGP_CASTEiJ_P0027733 protein_coding protein_coding MGP_CASTEiJ_T0027734.1 MGP_CASTEiJ_G0017422.1 mouse_genomes_project 11 27184616 27333697 + MGP_CASTEiJ_P0027734 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027735.1 MGP_CASTEiJ_G0017422.1 mouse_genomes_project 11 27184616 27333697 + MGP_CASTEiJ_P0027735 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027736.1 MGP_CASTEiJ_G0017422.1 mouse_genomes_project 11 27184616 27333697 + MGP_CASTEiJ_P0027736 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027737.1 MGP_CASTEiJ_G0017422.1 mouse_genomes_project 11 27268829 27274253 + protein_coding processed_transcript MGP_CASTEiJ_T0027738.1 MGP_CASTEiJ_G0017422.1 mouse_genomes_project 11 27276917 27295431 + MGP_CASTEiJ_P0027738 protein_coding protein_coding MGP_CASTEiJ_T0027739.1 MGP_CASTEiJ_G0017422.1 mouse_genomes_project 11 27283373 27329025 + MGP_CASTEiJ_P0027739 protein_coding protein_coding MGP_CASTEiJ_T0027740.1 MGP_CASTEiJ_G0017422.1 mouse_genomes_project 11 27310427 27328437 + MGP_CASTEiJ_P0027740 protein_coding protein_coding MGP_CASTEiJ_T0027741.1 MGP_CASTEiJ_G0017422.1 mouse_genomes_project 11 27318905 27322808 + protein_coding processed_transcript MGP_CASTEiJ_T0028633.1 MGP_CASTEiJ_G0017653.1 mouse_genomes_project 11 56777357 56792567 + MGP_CASTEiJ_P0028633 Mfap3 protein_coding protein_coding MGP_CASTEiJ_T0028634.1 MGP_CASTEiJ_G0017653.1 mouse_genomes_project 11 56777379 56787850 + Mfap3 protein_coding retained_intron MGP_CASTEiJ_T0028635.1 MGP_CASTEiJ_G0017653.1 mouse_genomes_project 11 56777380 56792566 + MGP_CASTEiJ_P0028635 Mfap3 protein_coding protein_coding MGP_CASTEiJ_T0028636.1 MGP_CASTEiJ_G0017653.1 mouse_genomes_project 11 56781657 56788287 + MGP_CASTEiJ_P0028636 Mfap3 protein_coding protein_coding MGP_CASTEiJ_T0016542.1 MGP_CASTEiJ_G0014532.1 mouse_genomes_project 11 117935921 117936867 + 1700092K14Rik processed_transcript processed_transcript MGP_CASTEiJ_T0098325.1 MGP_CASTEiJ_G0035256.1 mouse_genomes_project 11 73791023 73791969 + pseudogene pseudogene MGP_CASTEiJ_T0003049.1 MGP_CASTEiJ_G0002842.1 mouse_genomes_project 11 50107476 50111457 + antisense antisense MGP_CASTEiJ_T0003050.1 MGP_CASTEiJ_G0002842.1 mouse_genomes_project 11 50108739 50111312 + antisense antisense MGP_CASTEiJ_T0031220.1 MGP_CASTEiJ_G0018264.1 mouse_genomes_project 11 96221185 96241042 + MGP_CASTEiJ_P0031220 Ankrd40 protein_coding protein_coding MGP_CASTEiJ_T0031221.1 MGP_CASTEiJ_G0018264.1 mouse_genomes_project 11 96221197 96233715 + MGP_CASTEiJ_P0031221 Ankrd40 protein_coding protein_coding MGP_CASTEiJ_T0031222.1 MGP_CASTEiJ_G0018264.1 mouse_genomes_project 11 96221438 96233314 + MGP_CASTEiJ_P0031222 Ankrd40 protein_coding protein_coding MGP_CASTEiJ_T0031223.1 MGP_CASTEiJ_G0018264.1 mouse_genomes_project 11 96227033 96228391 + MGP_CASTEiJ_P0031223 Ankrd40 protein_coding protein_coding MGP_CASTEiJ_T0031224.1 MGP_CASTEiJ_G0018264.1 mouse_genomes_project 11 96232094 96233940 + Ankrd40 protein_coding retained_intron MGP_CASTEiJ_T0028926.1 MGP_CASTEiJ_G0017737.1 mouse_genomes_project 11 60414589 60446726 + MGP_CASTEiJ_P0028926 Dhrs7b protein_coding protein_coding MGP_CASTEiJ_T0028927.1 MGP_CASTEiJ_G0017737.1 mouse_genomes_project 11 60414643 60446441 + MGP_CASTEiJ_P0028927 Dhrs7b protein_coding protein_coding MGP_CASTEiJ_T0031813.1 MGP_CASTEiJ_G0018426.1 mouse_genomes_project 11 102404498 102405172 + MGP_CASTEiJ_P0031813 protein_coding protein_coding MGP_CASTEiJ_T0012200.1 MGP_CASTEiJ_G0010363.1 mouse_genomes_project 11 28421171 28422039 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032170.1 MGP_CASTEiJ_G0018520.1 mouse_genomes_project 11 104764187 104780395 - MGP_CASTEiJ_P0032170 Dusp3 protein_coding protein_coding MGP_CASTEiJ_T0032171.1 MGP_CASTEiJ_G0018520.1 mouse_genomes_project 11 104764187 104778181 - MGP_CASTEiJ_P0032171 Dusp3 protein_coding protein_coding MGP_CASTEiJ_T0032172.1 MGP_CASTEiJ_G0018520.1 mouse_genomes_project 11 104764187 104780395 - MGP_CASTEiJ_P0032172 Dusp3 protein_coding protein_coding MGP_CASTEiJ_T0032173.1 MGP_CASTEiJ_G0018520.1 mouse_genomes_project 11 104764187 104776885 - MGP_CASTEiJ_P0032173 Dusp3 protein_coding protein_coding MGP_CASTEiJ_T0032174.1 MGP_CASTEiJ_G0018520.1 mouse_genomes_project 11 104766494 104775075 - MGP_CASTEiJ_P0032174 Dusp3 protein_coding protein_coding MGP_CASTEiJ_T0032175.1 MGP_CASTEiJ_G0018520.1 mouse_genomes_project 11 104767728 104778160 - MGP_CASTEiJ_P0032175 Dusp3 protein_coding protein_coding MGP_CASTEiJ_T0032176.1 MGP_CASTEiJ_G0018520.1 mouse_genomes_project 11 104773980 104778133 - MGP_CASTEiJ_P0032176 Dusp3 protein_coding protein_coding MGP_CASTEiJ_T0032080.1 MGP_CASTEiJ_G0018501.1 mouse_genomes_project 11 104065709 104074519 + MGP_CASTEiJ_P0032080 Aoc3 protein_coding protein_coding MGP_CASTEiJ_T0032081.1 MGP_CASTEiJ_G0018501.1 mouse_genomes_project 11 104066173 104076933 + MGP_CASTEiJ_P0032081 Aoc3 protein_coding protein_coding MGP_CASTEiJ_T0028272.1 MGP_CASTEiJ_G0017563.1 mouse_genomes_project 11 49164604 49214963 - MGP_CASTEiJ_P0028272 Rufy1 protein_coding protein_coding MGP_CASTEiJ_T0028273.1 MGP_CASTEiJ_G0017563.1 mouse_genomes_project 11 49164691 49195253 - Rufy1 protein_coding processed_transcript MGP_CASTEiJ_T0028274.1 MGP_CASTEiJ_G0017563.1 mouse_genomes_project 11 49189280 49205773 - Rufy1 protein_coding processed_transcript MGP_CASTEiJ_T0012178.1 MGP_CASTEiJ_G0010341.1 mouse_genomes_project 11 20166286 20166574 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010969.1 MGP_CASTEiJ_G0009157.1 mouse_genomes_project 11 50148331 50148586 + Gm25082 misc_RNA misc_RNA MGP_CASTEiJ_T0100445.1 MGP_CASTEiJ_G0037358.1 mouse_genomes_project 11 62321505 62321577 + Snord65 snoRNA snoRNA MGP_CASTEiJ_T0032201.1 MGP_CASTEiJ_G0018525.1 mouse_genomes_project 11 104900598 104903108 - MGP_CASTEiJ_P0032201 Ppy protein_coding protein_coding MGP_CASTEiJ_T0032202.1 MGP_CASTEiJ_G0018525.1 mouse_genomes_project 11 104900598 104903117 - MGP_CASTEiJ_P0032202 Ppy protein_coding protein_coding MGP_CASTEiJ_T0100424.1 MGP_CASTEiJ_G0037337.1 mouse_genomes_project 11 20752319 20752428 - Gm24398 snoRNA snoRNA MGP_CASTEiJ_T0027292.1 MGP_CASTEiJ_G0017328.1 mouse_genomes_project 11 2862844 2919185 - MGP_CASTEiJ_P0027292 Gck protein_coding protein_coding MGP_CASTEiJ_T0027293.1 MGP_CASTEiJ_G0017328.1 mouse_genomes_project 11 2863268 2881789 - MGP_CASTEiJ_P0027293 Gck protein_coding unknown_likely_coding MGP_CASTEiJ_T0027294.1 MGP_CASTEiJ_G0017328.1 mouse_genomes_project 11 2863596 2864112 - MGP_CASTEiJ_P0027294 Gck protein_coding protein_coding MGP_CASTEiJ_T0030141.1 MGP_CASTEiJ_G0018017.1 mouse_genomes_project 11 75948971 75962720 - MGP_CASTEiJ_P0030141 Serpinf1 protein_coding protein_coding MGP_CASTEiJ_T0030142.1 MGP_CASTEiJ_G0018017.1 mouse_genomes_project 11 75949266 75957354 - MGP_CASTEiJ_P0030142 Serpinf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030143.1 MGP_CASTEiJ_G0018017.1 mouse_genomes_project 11 75949423 75955017 - MGP_CASTEiJ_P0030143 Serpinf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030144.1 MGP_CASTEiJ_G0018017.1 mouse_genomes_project 11 75953170 75962605 - MGP_CASTEiJ_P0030144 Serpinf1 protein_coding protein_coding MGP_CASTEiJ_T0030145.1 MGP_CASTEiJ_G0018017.1 mouse_genomes_project 11 75953229 75954465 - Serpinf1 protein_coding retained_intron MGP_CASTEiJ_T0030146.1 MGP_CASTEiJ_G0018017.1 mouse_genomes_project 11 75954190 75962574 - MGP_CASTEiJ_P0030146 Serpinf1 protein_coding protein_coding MGP_CASTEiJ_T0030147.1 MGP_CASTEiJ_G0018017.1 mouse_genomes_project 11 75954756 75962571 - MGP_CASTEiJ_P0030147 Serpinf1 protein_coding protein_coding MGP_CASTEiJ_T0030148.1 MGP_CASTEiJ_G0018017.1 mouse_genomes_project 11 75955602 75957645 - MGP_CASTEiJ_P0030148 Serpinf1 protein_coding protein_coding MGP_CASTEiJ_T0009422.1 MGP_CASTEiJ_G0007610.1 mouse_genomes_project 11 42985035 42985085 + Gm22121 miRNA miRNA MGP_CASTEiJ_T0003246.1 MGP_CASTEiJ_G0003001.1 mouse_genomes_project 11 124093738 124109512 - Rptoros antisense antisense MGP_CASTEiJ_T0027019.1 MGP_CASTEiJ_G0017271.1 mouse_genomes_project 11 140991 155193 + MGP_CASTEiJ_P0027019 Pik3ip1 protein_coding protein_coding MGP_CASTEiJ_T0027020.1 MGP_CASTEiJ_G0017271.1 mouse_genomes_project 11 141318 144312 + Pik3ip1 protein_coding retained_intron MGP_CASTEiJ_T0027021.1 MGP_CASTEiJ_G0017271.1 mouse_genomes_project 11 141377 153899 + MGP_CASTEiJ_P0027021 Pik3ip1 protein_coding protein_coding MGP_CASTEiJ_T0027022.1 MGP_CASTEiJ_G0017271.1 mouse_genomes_project 11 141383 146182 + Pik3ip1 protein_coding retained_intron MGP_CASTEiJ_T0027023.1 MGP_CASTEiJ_G0017271.1 mouse_genomes_project 11 143093 146184 + MGP_CASTEiJ_P0027023 Pik3ip1 protein_coding protein_coding MGP_CASTEiJ_T0027024.1 MGP_CASTEiJ_G0017271.1 mouse_genomes_project 11 144280 145889 + Pik3ip1 protein_coding retained_intron MGP_CASTEiJ_T0027025.1 MGP_CASTEiJ_G0017271.1 mouse_genomes_project 11 144317 153890 + MGP_CASTEiJ_P0027025 Pik3ip1 protein_coding protein_coding MGP_CASTEiJ_T0027026.1 MGP_CASTEiJ_G0017271.1 mouse_genomes_project 11 144659 153908 + MGP_CASTEiJ_P0027026 Pik3ip1 protein_coding protein_coding MGP_CASTEiJ_T0027027.1 MGP_CASTEiJ_G0017271.1 mouse_genomes_project 11 145181 146180 + Pik3ip1 protein_coding processed_transcript MGP_CASTEiJ_T0027028.1 MGP_CASTEiJ_G0017271.1 mouse_genomes_project 11 146597 154227 + Pik3ip1 protein_coding processed_transcript MGP_CASTEiJ_T0012154.1 MGP_CASTEiJ_G0010317.1 mouse_genomes_project 11 15649440 15651504 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100416.1 MGP_CASTEiJ_G0037329.1 mouse_genomes_project 11 5088907 5088981 - Gm24051 snoRNA snoRNA MGP_CASTEiJ_T0028985.1 MGP_CASTEiJ_G0017750.1 mouse_genomes_project 11 61111730 61117182 - Mapk7 protein_coding processed_transcript MGP_CASTEiJ_T0028986.1 MGP_CASTEiJ_G0017750.1 mouse_genomes_project 11 61111730 61117182 - Mapk7 protein_coding processed_transcript MGP_CASTEiJ_T0028987.1 MGP_CASTEiJ_G0017750.1 mouse_genomes_project 11 61111730 61117212 - Mapk7 protein_coding processed_transcript MGP_CASTEiJ_T0028988.1 MGP_CASTEiJ_G0017750.1 mouse_genomes_project 11 61111730 61117212 - MGP_CASTEiJ_P0028988 Mapk7 protein_coding protein_coding MGP_CASTEiJ_T0028989.1 MGP_CASTEiJ_G0017750.1 mouse_genomes_project 11 61111730 61117182 - MGP_CASTEiJ_P0028989 Mapk7 protein_coding protein_coding MGP_CASTEiJ_T0028990.1 MGP_CASTEiJ_G0017750.1 mouse_genomes_project 11 61111730 61117212 - MGP_CASTEiJ_P0028990 Mapk7 protein_coding protein_coding MGP_CASTEiJ_T0028991.1 MGP_CASTEiJ_G0017750.1 mouse_genomes_project 11 61112377 61113857 - MGP_CASTEiJ_P0028991 Mapk7 protein_coding protein_coding MGP_CASTEiJ_T0028992.1 MGP_CASTEiJ_G0017750.1 mouse_genomes_project 11 61114220 61116616 - Mapk7 protein_coding processed_transcript MGP_CASTEiJ_T0028993.1 MGP_CASTEiJ_G0017750.1 mouse_genomes_project 11 61114474 61117182 - Mapk7 protein_coding processed_transcript MGP_CASTEiJ_T0028994.1 MGP_CASTEiJ_G0017750.1 mouse_genomes_project 11 61114496 61117182 - Mapk7 protein_coding processed_transcript MGP_CASTEiJ_T0028995.1 MGP_CASTEiJ_G0017750.1 mouse_genomes_project 11 61114514 61117324 - Mapk7 protein_coding processed_transcript MGP_CASTEiJ_T0028996.1 MGP_CASTEiJ_G0017750.1 mouse_genomes_project 11 61114524 61117104 - Mapk7 protein_coding processed_transcript MGP_CASTEiJ_T0028997.1 MGP_CASTEiJ_G0017750.1 mouse_genomes_project 11 61114524 61117182 - Mapk7 protein_coding processed_transcript MGP_CASTEiJ_T0028998.1 MGP_CASTEiJ_G0017750.1 mouse_genomes_project 11 61114560 61117104 - Mapk7 protein_coding processed_transcript MGP_CASTEiJ_T0016498.1 MGP_CASTEiJ_G0014506.1 mouse_genomes_project 11 87155386 87201574 - 2610027K06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016499.1 MGP_CASTEiJ_G0014506.1 mouse_genomes_project 11 87159513 87201588 - 2610027K06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016500.1 MGP_CASTEiJ_G0014506.1 mouse_genomes_project 11 87159599 87168990 - 2610027K06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0032634.1 MGP_CASTEiJ_G0018610.1 mouse_genomes_project 11 109472120 109484776 + MGP_CASTEiJ_P0032634 Prr29 protein_coding protein_coding MGP_CASTEiJ_T0032635.1 MGP_CASTEiJ_G0018610.1 mouse_genomes_project 11 109479597 109484904 + MGP_CASTEiJ_P0032635 Prr29 protein_coding protein_coding MGP_CASTEiJ_T0032636.1 MGP_CASTEiJ_G0018610.1 mouse_genomes_project 11 109479597 109485220 + MGP_CASTEiJ_P0032636 Prr29 protein_coding protein_coding MGP_CASTEiJ_T0032637.1 MGP_CASTEiJ_G0018610.1 mouse_genomes_project 11 109479597 109485010 + MGP_CASTEiJ_P0032637 Prr29 protein_coding protein_coding MGP_CASTEiJ_T0032638.1 MGP_CASTEiJ_G0018610.1 mouse_genomes_project 11 109479610 109484765 + MGP_CASTEiJ_P0032638 Prr29 protein_coding protein_coding MGP_CASTEiJ_T0031803.1 MGP_CASTEiJ_G0018416.1 mouse_genomes_project 11 102176728 102179519 - MGP_CASTEiJ_P0031803 protein_coding protein_coding MGP_CASTEiJ_T0029573.1 MGP_CASTEiJ_G0017879.1 mouse_genomes_project 11 70066711 70072358 - Slc2a4 protein_coding retained_intron MGP_CASTEiJ_T0029574.1 MGP_CASTEiJ_G0017879.1 mouse_genomes_project 11 70067463 70072230 - MGP_CASTEiJ_P0029574 Slc2a4 protein_coding protein_coding MGP_CASTEiJ_T0029575.1 MGP_CASTEiJ_G0017879.1 mouse_genomes_project 11 70067962 70072347 - MGP_CASTEiJ_P0029575 Slc2a4 protein_coding protein_coding MGP_CASTEiJ_T0029576.1 MGP_CASTEiJ_G0017879.1 mouse_genomes_project 11 70069453 70072330 - MGP_CASTEiJ_P0029576 Slc2a4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029577.1 MGP_CASTEiJ_G0017879.1 mouse_genomes_project 11 70069453 70072157 - MGP_CASTEiJ_P0029577 Slc2a4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029578.1 MGP_CASTEiJ_G0017879.1 mouse_genomes_project 11 70069747 70072328 - MGP_CASTEiJ_P0029578 Slc2a4 protein_coding protein_coding MGP_CASTEiJ_T0029579.1 MGP_CASTEiJ_G0017879.1 mouse_genomes_project 11 70070253 70072337 - MGP_CASTEiJ_P0029579 Slc2a4 protein_coding protein_coding MGP_CASTEiJ_T0029126.1 MGP_CASTEiJ_G0017772.1 mouse_genomes_project 11 62560433 62588539 + MGP_CASTEiJ_P0029126 Trim16 protein_coding protein_coding MGP_CASTEiJ_T0029127.1 MGP_CASTEiJ_G0017772.1 mouse_genomes_project 11 62560455 62597661 + MGP_CASTEiJ_P0029127 Trim16 protein_coding protein_coding MGP_CASTEiJ_T0029128.1 MGP_CASTEiJ_G0017772.1 mouse_genomes_project 11 62560642 62561451 + Trim16 protein_coding processed_transcript MGP_CASTEiJ_T0029129.1 MGP_CASTEiJ_G0017772.1 mouse_genomes_project 11 62560671 62588539 + MGP_CASTEiJ_P0029129 Trim16 protein_coding protein_coding MGP_CASTEiJ_T0029130.1 MGP_CASTEiJ_G0017772.1 mouse_genomes_project 11 62578372 62587060 + Trim16 protein_coding processed_transcript MGP_CASTEiJ_T0028488.1 MGP_CASTEiJ_G0017619.1 mouse_genomes_project 11 52812758 52817087 + MGP_CASTEiJ_P0028488 Il5 protein_coding protein_coding MGP_CASTEiJ_T0028892.1 MGP_CASTEiJ_G0017731.1 mouse_genomes_project 11 60267959 60282393 + MGP_CASTEiJ_P0028892 Llgl1 protein_coding protein_coding MGP_CASTEiJ_T0028893.1 MGP_CASTEiJ_G0017731.1 mouse_genomes_project 11 60268003 60281506 + MGP_CASTEiJ_P0028893 Llgl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028894.1 MGP_CASTEiJ_G0017731.1 mouse_genomes_project 11 60268007 60279980 + MGP_CASTEiJ_P0028894 Llgl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028895.1 MGP_CASTEiJ_G0017731.1 mouse_genomes_project 11 60268081 60282393 + MGP_CASTEiJ_P0028895 Llgl1 protein_coding protein_coding MGP_CASTEiJ_T0028896.1 MGP_CASTEiJ_G0017731.1 mouse_genomes_project 11 60272422 60274296 + Llgl1 protein_coding retained_intron MGP_CASTEiJ_T0000814.1 MGP_CASTEiJ_G0000754.1 mouse_genomes_project 11 124921512 124922682 + TEC TEC MGP_CASTEiJ_T0012183.1 MGP_CASTEiJ_G0010346.1 mouse_genomes_project 11 22178616 22180137 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003104.1 MGP_CASTEiJ_G0002887.1 mouse_genomes_project 11 67530878 67538192 - Gm12301 antisense antisense MGP_CASTEiJ_T0030842.1 MGP_CASTEiJ_G0018181.1 mouse_genomes_project 11 86127481 86135640 - MGP_CASTEiJ_P0030842 Dhrs11 protein_coding protein_coding MGP_CASTEiJ_T0030843.1 MGP_CASTEiJ_G0018181.1 mouse_genomes_project 11 86128616 86135670 - MGP_CASTEiJ_P0030843 Dhrs11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029058.1 MGP_CASTEiJ_G0017760.1 mouse_genomes_project 11 61934906 61952602 + MGP_CASTEiJ_P0029058 Adora2b protein_coding protein_coding MGP_CASTEiJ_T0006014.1 MGP_CASTEiJ_G0005035.1 mouse_genomes_project 11 16068831 16073040 - Gm28401 lincRNA lincRNA MGP_CASTEiJ_T0006015.1 MGP_CASTEiJ_G0005035.1 mouse_genomes_project 11 16068926 16073059 - Gm28401 lincRNA lincRNA MGP_CASTEiJ_T0030031.1 MGP_CASTEiJ_G0017982.1 mouse_genomes_project 11 74265181 74271871 - MGP_CASTEiJ_P0030031 Olfr391-ps protein_coding protein_coding MGP_CASTEiJ_T0030661.1 MGP_CASTEiJ_G0018125.1 mouse_genomes_project 11 81755603 81767528 + MGP_CASTEiJ_P0030661 Tmem98 protein_coding protein_coding MGP_CASTEiJ_T0029983.1 MGP_CASTEiJ_G0017960.1 mouse_genomes_project 11 73543148 73545958 - MGP_CASTEiJ_P0029983 Gsg2 protein_coding protein_coding MGP_CASTEiJ_T0006194.1 MGP_CASTEiJ_G0005174.1 mouse_genomes_project 11 116844838 116851154 - 4732490B19Rik lincRNA lincRNA MGP_CASTEiJ_T0003090.1 MGP_CASTEiJ_G0002877.1 mouse_genomes_project 11 62494856 62501123 + Zfp286os antisense antisense MGP_CASTEiJ_T0012205.1 MGP_CASTEiJ_G0010368.1 mouse_genomes_project 11 28850072 28851052 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031936.1 MGP_CASTEiJ_G0018471.1 mouse_genomes_project 11 103387418 103388144 + MGP_CASTEiJ_P0031936 Hspb9 protein_coding protein_coding MGP_CASTEiJ_T0031937.1 MGP_CASTEiJ_G0018471.1 mouse_genomes_project 11 103387490 103388142 + MGP_CASTEiJ_P0031937 Hspb9 protein_coding protein_coding MGP_CASTEiJ_T0032772.1 MGP_CASTEiJ_G0018635.1 mouse_genomes_project 11 112543873 112623650 - MGP_CASTEiJ_P0032772 Rgs9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032773.1 MGP_CASTEiJ_G0018635.1 mouse_genomes_project 11 112543876 112623686 - MGP_CASTEiJ_P0032773 Rgs9 protein_coding protein_coding MGP_CASTEiJ_T0032774.1 MGP_CASTEiJ_G0018635.1 mouse_genomes_project 11 112543882 112573408 - MGP_CASTEiJ_P0032774 Rgs9 protein_coding protein_coding MGP_CASTEiJ_T0032775.1 MGP_CASTEiJ_G0018635.1 mouse_genomes_project 11 112555422 112623623 - MGP_CASTEiJ_P0032775 Rgs9 protein_coding protein_coding MGP_CASTEiJ_T0032776.1 MGP_CASTEiJ_G0018635.1 mouse_genomes_project 11 112560855 112570225 - Rgs9 protein_coding processed_transcript MGP_CASTEiJ_T0032777.1 MGP_CASTEiJ_G0018635.1 mouse_genomes_project 11 112580119 112623663 - MGP_CASTEiJ_P0032777 Rgs9 protein_coding protein_coding MGP_CASTEiJ_T0006184.1 MGP_CASTEiJ_G0005168.1 mouse_genomes_project 11 113990764 113993780 + lincRNA lincRNA MGP_CASTEiJ_T0030735.1 MGP_CASTEiJ_G0018147.1 mouse_genomes_project 11 84185059 84208174 - MGP_CASTEiJ_P0030735 protein_coding protein_coding MGP_CASTEiJ_T0033256.1 MGP_CASTEiJ_G0018731.1 mouse_genomes_project 11 120434233 120439141 + MGP_CASTEiJ_P0033256 protein_coding protein_coding MGP_CASTEiJ_T0027523.1 MGP_CASTEiJ_G0017380.1 mouse_genomes_project 11 17584163 17604407 + Rab1a protein_coding processed_transcript MGP_CASTEiJ_T0027524.1 MGP_CASTEiJ_G0017380.1 mouse_genomes_project 11 17584247 17609979 + MGP_CASTEiJ_P0027524 Rab1a protein_coding protein_coding MGP_CASTEiJ_T0027525.1 MGP_CASTEiJ_G0017380.1 mouse_genomes_project 11 17584324 17608261 + Rab1a protein_coding processed_transcript MGP_CASTEiJ_T0032383.1 MGP_CASTEiJ_G0018552.1 mouse_genomes_project 11 105785276 105789256 + MGP_CASTEiJ_P0032383 Ccdc103 protein_coding protein_coding MGP_CASTEiJ_T0032384.1 MGP_CASTEiJ_G0018552.1 mouse_genomes_project 11 105785317 105788569 + MGP_CASTEiJ_P0032384 Ccdc103 protein_coding protein_coding MGP_CASTEiJ_T0031494.1 MGP_CASTEiJ_G0018332.1 mouse_genomes_project 11 99332593 99351512 - MGP_CASTEiJ_P0031494 Tbx21 protein_coding protein_coding MGP_CASTEiJ_T0012215.1 MGP_CASTEiJ_G0010378.1 mouse_genomes_project 11 33853625 33854308 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006025.1 MGP_CASTEiJ_G0005045.1 mouse_genomes_project 11 20294097 20297956 + Gm12056 lincRNA lincRNA MGP_CASTEiJ_T0012115.1 MGP_CASTEiJ_G0010278.1 mouse_genomes_project 11 962084 962554 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031578.1 MGP_CASTEiJ_G0018351.1 mouse_genomes_project 11 100100284 100108663 + MGP_CASTEiJ_P0031578 Lasp1 protein_coding protein_coding MGP_CASTEiJ_T0031579.1 MGP_CASTEiJ_G0018351.1 mouse_genomes_project 11 100100956 100109152 + Lasp1 protein_coding retained_intron MGP_CASTEiJ_T0031580.1 MGP_CASTEiJ_G0018351.1 mouse_genomes_project 11 100101046 100138369 + MGP_CASTEiJ_P0031580 Lasp1 protein_coding protein_coding MGP_CASTEiJ_T0031581.1 MGP_CASTEiJ_G0018351.1 mouse_genomes_project 11 100101122 100135619 + MGP_CASTEiJ_P0031581 Lasp1 protein_coding protein_coding MGP_CASTEiJ_T0031582.1 MGP_CASTEiJ_G0018351.1 mouse_genomes_project 11 100101282 100135607 + MGP_CASTEiJ_P0031582 Lasp1 protein_coding protein_coding MGP_CASTEiJ_T0031583.1 MGP_CASTEiJ_G0018351.1 mouse_genomes_project 11 100101456 100135575 + MGP_CASTEiJ_P0031583 Lasp1 protein_coding protein_coding MGP_CASTEiJ_T0031584.1 MGP_CASTEiJ_G0018351.1 mouse_genomes_project 11 100102039 100127088 + MGP_CASTEiJ_P0031584 Lasp1 protein_coding protein_coding MGP_CASTEiJ_T0031585.1 MGP_CASTEiJ_G0018351.1 mouse_genomes_project 11 100102045 100108743 + MGP_CASTEiJ_P0031585 Lasp1 protein_coding protein_coding MGP_CASTEiJ_T0031586.1 MGP_CASTEiJ_G0018351.1 mouse_genomes_project 11 100103752 100127090 + MGP_CASTEiJ_P0031586 Lasp1 protein_coding protein_coding MGP_CASTEiJ_T0031587.1 MGP_CASTEiJ_G0018351.1 mouse_genomes_project 11 100107013 100138134 + MGP_CASTEiJ_P0031587 Lasp1 protein_coding protein_coding MGP_CASTEiJ_T0031588.1 MGP_CASTEiJ_G0018351.1 mouse_genomes_project 11 100108133 100108724 + MGP_CASTEiJ_P0031588 Lasp1 protein_coding protein_coding MGP_CASTEiJ_T0031589.1 MGP_CASTEiJ_G0018351.1 mouse_genomes_project 11 100108325 100117695 + MGP_CASTEiJ_P0031589 Lasp1 protein_coding protein_coding MGP_CASTEiJ_T0031590.1 MGP_CASTEiJ_G0018351.1 mouse_genomes_project 11 100117164 100127129 + MGP_CASTEiJ_P0031590 Lasp1 protein_coding protein_coding MGP_CASTEiJ_T0031591.1 MGP_CASTEiJ_G0018351.1 mouse_genomes_project 11 100135209 100138220 + Lasp1 protein_coding retained_intron MGP_CASTEiJ_T0031592.1 MGP_CASTEiJ_G0018351.1 mouse_genomes_project 11 100135435 100136399 + Lasp1 protein_coding retained_intron MGP_CASTEiJ_T0003056.1 MGP_CASTEiJ_G0002848.1 mouse_genomes_project 11 52815931 52816598 - Gm12214 antisense antisense MGP_CASTEiJ_T0031361.1 MGP_CASTEiJ_G0018296.1 mouse_genomes_project 11 97827354 97955512 + MGP_CASTEiJ_P0031361 Zfp652 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031362.1 MGP_CASTEiJ_G0018296.1 mouse_genomes_project 11 97827370 97885383 + MGP_CASTEiJ_P0031362 Zfp652 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031364.1 MGP_CASTEiJ_G0018296.1 mouse_genomes_project 11 97865670 97889034 + MGP_CASTEiJ_P0031364 Zfp652 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028041.1 MGP_CASTEiJ_G0017500.1 mouse_genomes_project 11 43037601 43088341 + MGP_CASTEiJ_P0028041 Rnf145 protein_coding protein_coding MGP_CASTEiJ_T0028042.1 MGP_CASTEiJ_G0017500.1 mouse_genomes_project 11 43037620 43043926 + Rnf145 protein_coding processed_transcript MGP_CASTEiJ_T0028043.1 MGP_CASTEiJ_G0017500.1 mouse_genomes_project 11 43037818 43087595 + MGP_CASTEiJ_P0028043 Rnf145 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028044.1 MGP_CASTEiJ_G0017500.1 mouse_genomes_project 11 43038079 43077747 + MGP_CASTEiJ_P0028044 Rnf145 protein_coding protein_coding MGP_CASTEiJ_T0028045.1 MGP_CASTEiJ_G0017500.1 mouse_genomes_project 11 43038942 43071694 + Rnf145 protein_coding processed_transcript MGP_CASTEiJ_T0028046.1 MGP_CASTEiJ_G0017500.1 mouse_genomes_project 11 43079385 43082594 + Rnf145 protein_coding processed_transcript MGP_CASTEiJ_T0028047.1 MGP_CASTEiJ_G0017500.1 mouse_genomes_project 11 43082575 43084542 + Rnf145 protein_coding processed_transcript MGP_CASTEiJ_T0031616.1 MGP_CASTEiJ_G0018358.1 mouse_genomes_project 11 100353798 100374609 - MGP_CASTEiJ_P0031616 Stac2 protein_coding protein_coding MGP_CASTEiJ_T0031617.1 MGP_CASTEiJ_G0018358.1 mouse_genomes_project 11 100355129 100374156 - MGP_CASTEiJ_P0031617 Stac2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031618.1 MGP_CASTEiJ_G0018358.1 mouse_genomes_project 11 100357314 100360855 - MGP_CASTEiJ_P0031618 Stac2 protein_coding protein_coding MGP_CASTEiJ_T0027324.1 MGP_CASTEiJ_G0017335.1 mouse_genomes_project 11 3250516 3254997 - MGP_CASTEiJ_P0027324 Tmed4 protein_coding protein_coding MGP_CASTEiJ_T0027325.1 MGP_CASTEiJ_G0017335.1 mouse_genomes_project 11 3251808 3254997 - Tmed4 protein_coding retained_intron MGP_CASTEiJ_T0027326.1 MGP_CASTEiJ_G0017335.1 mouse_genomes_project 11 3253868 3254992 - MGP_CASTEiJ_P0027326 Tmed4 protein_coding protein_coding MGP_CASTEiJ_T0098455.1 MGP_CASTEiJ_G0035386.1 mouse_genomes_project 11 20638906 20639006 - Gm23740 rRNA rRNA MGP_CASTEiJ_T0009499.1 MGP_CASTEiJ_G0007687.1 mouse_genomes_project 11 103108885 103108966 - Gm27374 miRNA miRNA MGP_CASTEiJ_T0006093.1 MGP_CASTEiJ_G0005103.1 mouse_genomes_project 11 63984027 64001738 + Gm12290 lincRNA lincRNA MGP_CASTEiJ_T0027216.1 MGP_CASTEiJ_G0017312.1 mouse_genomes_project 11 1988601 1997715 - MGP_CASTEiJ_P0027216 Ewsr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027217.1 MGP_CASTEiJ_G0017312.1 mouse_genomes_project 11 1988802 2017849 - MGP_CASTEiJ_P0027217 Ewsr1 protein_coding protein_coding MGP_CASTEiJ_T0027218.1 MGP_CASTEiJ_G0017312.1 mouse_genomes_project 11 1988886 1989804 - Ewsr1 protein_coding processed_transcript MGP_CASTEiJ_T0027219.1 MGP_CASTEiJ_G0017312.1 mouse_genomes_project 11 1989989 1998297 - Ewsr1 protein_coding processed_transcript MGP_CASTEiJ_T0027220.1 MGP_CASTEiJ_G0017312.1 mouse_genomes_project 11 1990299 1997289 - Ewsr1 protein_coding processed_transcript MGP_CASTEiJ_T0027221.1 MGP_CASTEiJ_G0017312.1 mouse_genomes_project 11 1990402 2001110 - Ewsr1 protein_coding processed_transcript MGP_CASTEiJ_T0027222.1 MGP_CASTEiJ_G0017312.1 mouse_genomes_project 11 1990402 1998668 - Ewsr1 protein_coding processed_transcript MGP_CASTEiJ_T0027223.1 MGP_CASTEiJ_G0017312.1 mouse_genomes_project 11 1999186 2017830 - MGP_CASTEiJ_P0027223 Ewsr1 protein_coding protein_coding MGP_CASTEiJ_T0027224.1 MGP_CASTEiJ_G0017312.1 mouse_genomes_project 11 2000791 2004801 - Ewsr1 protein_coding processed_transcript MGP_CASTEiJ_T0027225.1 MGP_CASTEiJ_G0017312.1 mouse_genomes_project 11 2009206 2017860 - MGP_CASTEiJ_P0027225 Ewsr1 protein_coding protein_coding MGP_CASTEiJ_T0027226.1 MGP_CASTEiJ_G0017312.1 mouse_genomes_project 11 2012282 2017831 - Ewsr1 protein_coding processed_transcript MGP_CASTEiJ_T0031796.1 MGP_CASTEiJ_G0018409.1 mouse_genomes_project 11 102119894 102120194 - MGP_CASTEiJ_P0031796 Gm11939 protein_coding protein_coding MGP_CASTEiJ_T0030029.1 MGP_CASTEiJ_G0017981.1 mouse_genomes_project 11 74244753 74390420 + MGP_CASTEiJ_P0030029 Olfr390 protein_coding protein_coding MGP_CASTEiJ_T0030030.1 MGP_CASTEiJ_G0017981.1 mouse_genomes_project 11 74244771 74389951 + MGP_CASTEiJ_P0030030 Olfr390 protein_coding protein_coding MGP_CASTEiJ_T0030037.1 MGP_CASTEiJ_G0017981.1 mouse_genomes_project 11 74389481 74390420 + MGP_CASTEiJ_P0030037 Olfr390 protein_coding protein_coding MGP_CASTEiJ_T0012314.1 MGP_CASTEiJ_G0010477.1 mouse_genomes_project 11 75219030 75219198 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033231.1 MGP_CASTEiJ_G0018726.1 mouse_genomes_project 11 120267584 120270569 + MGP_CASTEiJ_P0033231 Galr2 protein_coding protein_coding MGP_CASTEiJ_T0033232.1 MGP_CASTEiJ_G0018726.1 mouse_genomes_project 11 120268136 120270313 + Galr2 protein_coding processed_transcript MGP_CASTEiJ_T0011467.1 MGP_CASTEiJ_G0009652.1 mouse_genomes_project 11 74682870 74683842 + MGP_CASTEiJ_P0011467 Olfr404-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0030453.1 MGP_CASTEiJ_G0018077.1 mouse_genomes_project 11 78950819 78994161 - MGP_CASTEiJ_P0030453 Supt6 protein_coding protein_coding MGP_CASTEiJ_T0030454.1 MGP_CASTEiJ_G0018077.1 mouse_genomes_project 11 78951092 78993868 - MGP_CASTEiJ_P0030454 Supt6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030455.1 MGP_CASTEiJ_G0018077.1 mouse_genomes_project 11 78951102 78967847 - Supt6 protein_coding retained_intron MGP_CASTEiJ_T0101977.1 MGP_CASTEiJ_G0038702.1 mouse_genomes_project 11 5078168 5079810 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0006167.1 MGP_CASTEiJ_G0005154.1 mouse_genomes_project 11 98902797 98942988 - 2010300F17Rik lincRNA lincRNA MGP_CASTEiJ_T0006168.1 MGP_CASTEiJ_G0005154.1 mouse_genomes_project 11 98941574 98942962 - 2010300F17Rik lincRNA lincRNA MGP_CASTEiJ_T0012213.1 MGP_CASTEiJ_G0010376.1 mouse_genomes_project 11 31498092 31498606 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009466.1 MGP_CASTEiJ_G0007654.1 mouse_genomes_project 11 75862342 75862460 - miRNA miRNA MGP_CASTEiJ_T0099242.1 MGP_CASTEiJ_G0036155.1 mouse_genomes_project 11 69125089 69125190 + Gm25371 snRNA snRNA MGP_CASTEiJ_T0003133.1 MGP_CASTEiJ_G0002913.1 mouse_genomes_project 11 83868980 83870430 - antisense antisense MGP_CASTEiJ_T0003134.1 MGP_CASTEiJ_G0002913.1 mouse_genomes_project 11 83869210 83870430 - antisense antisense MGP_CASTEiJ_T0100458.1 MGP_CASTEiJ_G0037371.1 mouse_genomes_project 11 77897971 77898059 - Gm24989 snoRNA snoRNA MGP_CASTEiJ_T0030018.1 MGP_CASTEiJ_G0017972.1 mouse_genomes_project 11 73812088 73816494 - MGP_CASTEiJ_P0030018 Olfr1 protein_coding protein_coding MGP_CASTEiJ_T0030019.1 MGP_CASTEiJ_G0017972.1 mouse_genomes_project 11 73812444 73816494 - MGP_CASTEiJ_P0030019 Olfr1 protein_coding protein_coding MGP_CASTEiJ_T0029924.1 MGP_CASTEiJ_G0017947.1 mouse_genomes_project 11 72802866 72805411 + MGP_CASTEiJ_P0029924 Ggt6 protein_coding protein_coding MGP_CASTEiJ_T0029925.1 MGP_CASTEiJ_G0017947.1 mouse_genomes_project 11 72802871 72805810 + MGP_CASTEiJ_P0029925 Ggt6 protein_coding protein_coding MGP_CASTEiJ_T0006122.1 MGP_CASTEiJ_G0005126.1 mouse_genomes_project 11 80650226 80651150 - 9130204K15Rik lincRNA lincRNA MGP_CASTEiJ_T0006123.1 MGP_CASTEiJ_G0005126.1 mouse_genomes_project 11 80650293 80747097 - 9130204K15Rik lincRNA lincRNA MGP_CASTEiJ_T0006124.1 MGP_CASTEiJ_G0005126.1 mouse_genomes_project 11 80650756 80734503 - 9130204K15Rik lincRNA lincRNA MGP_CASTEiJ_T0006125.1 MGP_CASTEiJ_G0005126.1 mouse_genomes_project 11 80666163 80676347 - 9130204K15Rik lincRNA lincRNA MGP_CASTEiJ_T0028693.1 MGP_CASTEiJ_G0017675.1 mouse_genomes_project 11 57896682 57912037 - MGP_CASTEiJ_P0028693 protein_coding protein_coding MGP_CASTEiJ_T0030908.1 MGP_CASTEiJ_G0018194.1 mouse_genomes_project 11 87258212 87290207 + MGP_CASTEiJ_P0030908 Tbx4 protein_coding protein_coding MGP_CASTEiJ_T0030909.1 MGP_CASTEiJ_G0018194.1 mouse_genomes_project 11 87261863 87290209 + MGP_CASTEiJ_P0030909 Tbx4 protein_coding protein_coding MGP_CASTEiJ_T0030910.1 MGP_CASTEiJ_G0018194.1 mouse_genomes_project 11 87267226 87290000 + MGP_CASTEiJ_P0030910 Tbx4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003037.1 MGP_CASTEiJ_G0002830.1 mouse_genomes_project 11 41618365 41681192 - Gm12146 antisense antisense MGP_CASTEiJ_T0009481.1 MGP_CASTEiJ_G0007669.1 mouse_genomes_project 11 88563624 88563710 + Mir301 miRNA miRNA MGP_CASTEiJ_T0031500.1 MGP_CASTEiJ_G0018334.1 mouse_genomes_project 11 99396985 99428080 - MGP_CASTEiJ_P0031500 Kpnb1 protein_coding protein_coding MGP_CASTEiJ_T0031501.1 MGP_CASTEiJ_G0018334.1 mouse_genomes_project 11 99400469 99402165 - Kpnb1 protein_coding retained_intron MGP_CASTEiJ_T0031502.1 MGP_CASTEiJ_G0018334.1 mouse_genomes_project 11 99402163 99403343 - Kpnb1 protein_coding retained_intron MGP_CASTEiJ_T0029316.1 MGP_CASTEiJ_G0017820.1 mouse_genomes_project 11 69014432 69015784 - MGP_CASTEiJ_P0029316 Rangrf protein_coding unknown_likely_coding MGP_CASTEiJ_T0029317.1 MGP_CASTEiJ_G0017820.1 mouse_genomes_project 11 69014584 69015855 - Rangrf protein_coding processed_transcript MGP_CASTEiJ_T0028107.1 MGP_CASTEiJ_G0017520.1 mouse_genomes_project 11 45562435 46278421 - MGP_CASTEiJ_P0028107 Sgcd protein_coding protein_coding MGP_CASTEiJ_T0028108.1 MGP_CASTEiJ_G0017520.1 mouse_genomes_project 11 45621432 46050737 - MGP_CASTEiJ_P0028108 Sgcd protein_coding unknown_likely_coding MGP_CASTEiJ_T0028109.1 MGP_CASTEiJ_G0017520.1 mouse_genomes_project 11 45640591 46079877 - MGP_CASTEiJ_P0028109 Sgcd protein_coding protein_coding MGP_CASTEiJ_T0028110.1 MGP_CASTEiJ_G0017520.1 mouse_genomes_project 11 46046642 46336167 - Sgcd protein_coding processed_transcript MGP_CASTEiJ_T0028111.1 MGP_CASTEiJ_G0017520.1 mouse_genomes_project 11 46278260 46683391 - Sgcd protein_coding processed_transcript MGP_CASTEiJ_T0027390.1 MGP_CASTEiJ_G0017349.1 mouse_genomes_project 11 4270075 4274857 + MGP_CASTEiJ_P0027390 Igfbp1 protein_coding protein_coding MGP_CASTEiJ_T0027812.1 MGP_CASTEiJ_G0017438.1 mouse_genomes_project 11 29262103 29290390 - MGP_CASTEiJ_P0027812 Stc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027813.1 MGP_CASTEiJ_G0017438.1 mouse_genomes_project 11 29277701 29290482 - MGP_CASTEiJ_P0027813 Stc2 protein_coding protein_coding MGP_CASTEiJ_T0027814.1 MGP_CASTEiJ_G0017438.1 mouse_genomes_project 11 29278383 29289511 - Stc2 protein_coding processed_transcript MGP_CASTEiJ_T0027815.1 MGP_CASTEiJ_G0017438.1 mouse_genomes_project 11 29285824 29288574 - Stc2 protein_coding processed_transcript MGP_CASTEiJ_T0027816.1 MGP_CASTEiJ_G0017438.1 mouse_genomes_project 11 29288406 29290455 - Stc2 protein_coding processed_transcript MGP_CASTEiJ_T0027817.1 MGP_CASTEiJ_G0017438.1 mouse_genomes_project 11 29288410 29289464 - Stc2 protein_coding processed_transcript MGP_CASTEiJ_T0032838.1 MGP_CASTEiJ_G0018649.1 mouse_genomes_project 11 113753289 113956324 + MGP_CASTEiJ_P0032838 Map2k6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032839.1 MGP_CASTEiJ_G0018649.1 mouse_genomes_project 11 113753499 113956324 + MGP_CASTEiJ_P0032839 Map2k6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032840.1 MGP_CASTEiJ_G0018649.1 mouse_genomes_project 11 113753499 113956324 + MGP_CASTEiJ_P0032840 Map2k6 protein_coding protein_coding MGP_CASTEiJ_T0032841.1 MGP_CASTEiJ_G0018649.1 mouse_genomes_project 11 113825429 113956835 + Map2k6 protein_coding processed_transcript MGP_CASTEiJ_T0032842.1 MGP_CASTEiJ_G0018649.1 mouse_genomes_project 11 113915985 113941968 + Map2k6 protein_coding processed_transcript MGP_CASTEiJ_T0032843.1 MGP_CASTEiJ_G0018649.1 mouse_genomes_project 11 113917650 113940343 + Map2k6 protein_coding processed_transcript MGP_CASTEiJ_T0009411.1 MGP_CASTEiJ_G0007599.1 mouse_genomes_project 11 21071142 21071233 - miRNA miRNA MGP_CASTEiJ_T0030498.1 MGP_CASTEiJ_G0018085.1 mouse_genomes_project 11 79124244 79155037 - MGP_CASTEiJ_P0030498 Foxn1 protein_coding protein_coding MGP_CASTEiJ_T0000811.1 MGP_CASTEiJ_G0000751.1 mouse_genomes_project 11 85463516 85465855 + TEC TEC MGP_CASTEiJ_T0031536.1 MGP_CASTEiJ_G0018340.1 mouse_genomes_project 11 99762523 99773544 - MGP_CASTEiJ_P0031536 4933428G20Rik protein_coding protein_coding MGP_CASTEiJ_T0033437.1 MGP_CASTEiJ_G0018765.1 mouse_genomes_project 11 122289297 122413154 - MGP_CASTEiJ_P0033437 Cyth1 protein_coding protein_coding MGP_CASTEiJ_T0033438.1 MGP_CASTEiJ_G0018765.1 mouse_genomes_project 11 122322336 122413244 - MGP_CASTEiJ_P0033438 Cyth1 protein_coding protein_coding MGP_CASTEiJ_T0033439.1 MGP_CASTEiJ_G0018765.1 mouse_genomes_project 11 122322336 122374538 - MGP_CASTEiJ_P0033439 Cyth1 protein_coding protein_coding MGP_CASTEiJ_T0033440.1 MGP_CASTEiJ_G0018765.1 mouse_genomes_project 11 122322345 122413212 - MGP_CASTEiJ_P0033440 Cyth1 protein_coding protein_coding MGP_CASTEiJ_T0033441.1 MGP_CASTEiJ_G0018765.1 mouse_genomes_project 11 122343155 122388898 - Cyth1 protein_coding processed_transcript MGP_CASTEiJ_T0033442.1 MGP_CASTEiJ_G0018765.1 mouse_genomes_project 11 122343610 122380849 - Cyth1 protein_coding processed_transcript MGP_CASTEiJ_T0033443.1 MGP_CASTEiJ_G0018765.1 mouse_genomes_project 11 122343629 122374538 - MGP_CASTEiJ_P0033443 Cyth1 protein_coding protein_coding MGP_CASTEiJ_T0100428.1 MGP_CASTEiJ_G0037341.1 mouse_genomes_project 11 25015485 25015617 - Gm25387 snoRNA snoRNA MGP_CASTEiJ_T0033754.1 MGP_CASTEiJ_G0018823.1 mouse_genomes_project 11 125004241 125011255 - MGP_CASTEiJ_P0033754 Notum protein_coding protein_coding MGP_CASTEiJ_T0033755.1 MGP_CASTEiJ_G0018823.1 mouse_genomes_project 11 125004241 125011032 - MGP_CASTEiJ_P0033755 Notum protein_coding protein_coding MGP_CASTEiJ_T0033756.1 MGP_CASTEiJ_G0018823.1 mouse_genomes_project 11 125004299 125008469 - Notum protein_coding retained_intron MGP_CASTEiJ_T0033757.1 MGP_CASTEiJ_G0018823.1 mouse_genomes_project 11 125007987 125011601 - MGP_CASTEiJ_P0033757 Notum protein_coding protein_coding MGP_CASTEiJ_T0033143.1 MGP_CASTEiJ_G0018710.1 mouse_genomes_project 11 119856249 119859602 + MGP_CASTEiJ_P0033143 Smim6 protein_coding protein_coding MGP_CASTEiJ_T0032551.1 MGP_CASTEiJ_G0018588.1 mouse_genomes_project 11 108361587 108397645 + Mrc2 protein_coding processed_transcript MGP_CASTEiJ_T0032552.1 MGP_CASTEiJ_G0018588.1 mouse_genomes_project 11 108361590 108423830 + MGP_CASTEiJ_P0032552 Mrc2 protein_coding protein_coding MGP_CASTEiJ_T0032553.1 MGP_CASTEiJ_G0018588.1 mouse_genomes_project 11 108361612 108416526 + MGP_CASTEiJ_P0032553 Mrc2 protein_coding protein_coding MGP_CASTEiJ_T0032554.1 MGP_CASTEiJ_G0018588.1 mouse_genomes_project 11 108399869 108403118 + Mrc2 protein_coding processed_transcript MGP_CASTEiJ_T0032555.1 MGP_CASTEiJ_G0018588.1 mouse_genomes_project 11 108413367 108415792 + Mrc2 protein_coding retained_intron MGP_CASTEiJ_T0016528.1 MGP_CASTEiJ_G0014525.1 mouse_genomes_project 11 106678208 106678823 + Gm11642 processed_transcript processed_transcript MGP_CASTEiJ_T0029307.1 MGP_CASTEiJ_G0017818.1 mouse_genomes_project 11 68982651 68994609 - MGP_CASTEiJ_P0029307 Arhgef15 protein_coding protein_coding MGP_CASTEiJ_T0029308.1 MGP_CASTEiJ_G0017818.1 mouse_genomes_project 11 68982653 68997018 - MGP_CASTEiJ_P0029308 Arhgef15 protein_coding protein_coding MGP_CASTEiJ_T0029309.1 MGP_CASTEiJ_G0017818.1 mouse_genomes_project 11 68984030 68986902 - Arhgef15 protein_coding processed_transcript MGP_CASTEiJ_T0029310.1 MGP_CASTEiJ_G0017818.1 mouse_genomes_project 11 68985808 68987344 - Arhgef15 protein_coding processed_transcript MGP_CASTEiJ_T0029311.1 MGP_CASTEiJ_G0017818.1 mouse_genomes_project 11 68985954 68987184 - Arhgef15 protein_coding processed_transcript MGP_CASTEiJ_T0029312.1 MGP_CASTEiJ_G0017818.1 mouse_genomes_project 11 68987788 68991729 - Arhgef15 protein_coding retained_intron MGP_CASTEiJ_T0006074.1 MGP_CASTEiJ_G0005086.1 mouse_genomes_project 11 50062424 50092876 - lincRNA lincRNA MGP_CASTEiJ_T0006075.1 MGP_CASTEiJ_G0005086.1 mouse_genomes_project 11 50062843 50091980 - lincRNA lincRNA MGP_CASTEiJ_T0032351.1 MGP_CASTEiJ_G0018548.1 mouse_genomes_project 11 105655029 105673779 + MGP_CASTEiJ_P0032351 Adam11 protein_coding protein_coding MGP_CASTEiJ_T0032352.1 MGP_CASTEiJ_G0018548.1 mouse_genomes_project 11 105655029 105673779 + MGP_CASTEiJ_P0032352 Adam11 protein_coding protein_coding MGP_CASTEiJ_T0032353.1 MGP_CASTEiJ_G0018548.1 mouse_genomes_project 11 105655103 105671306 + MGP_CASTEiJ_P0032353 Adam11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032354.1 MGP_CASTEiJ_G0018548.1 mouse_genomes_project 11 105655679 105665032 + Adam11 protein_coding processed_transcript MGP_CASTEiJ_T0032355.1 MGP_CASTEiJ_G0018548.1 mouse_genomes_project 11 105655776 105665392 + Adam11 protein_coding processed_transcript MGP_CASTEiJ_T0032356.1 MGP_CASTEiJ_G0018548.1 mouse_genomes_project 11 105663336 105665325 + Adam11 protein_coding processed_transcript MGP_CASTEiJ_T0032357.1 MGP_CASTEiJ_G0018548.1 mouse_genomes_project 11 105665039 105667218 + Adam11 protein_coding processed_transcript MGP_CASTEiJ_T0032358.1 MGP_CASTEiJ_G0018548.1 mouse_genomes_project 11 105667638 105669679 + Adam11 protein_coding processed_transcript MGP_CASTEiJ_T0032359.1 MGP_CASTEiJ_G0018548.1 mouse_genomes_project 11 105667674 105669956 + Adam11 protein_coding processed_transcript MGP_CASTEiJ_T0032360.1 MGP_CASTEiJ_G0018548.1 mouse_genomes_project 11 105670108 105672022 + Adam11 protein_coding processed_transcript MGP_CASTEiJ_T0031804.1 MGP_CASTEiJ_G0018417.1 mouse_genomes_project 11 102176728 102179515 - MGP_CASTEiJ_P0031804 protein_coding protein_coding MGP_CASTEiJ_T0031825.1 MGP_CASTEiJ_G0018438.1 mouse_genomes_project 11 102610712 102611473 - MGP_CASTEiJ_P0031825 Krtap17-1 protein_coding protein_coding MGP_CASTEiJ_T0027043.1 MGP_CASTEiJ_G0017274.1 mouse_genomes_project 11 312813 318969 + MGP_CASTEiJ_P0027043 Pla2g3 protein_coding protein_coding MGP_CASTEiJ_T0027044.1 MGP_CASTEiJ_G0017274.1 mouse_genomes_project 11 312828 324156 + MGP_CASTEiJ_P0027044 Pla2g3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027045.1 MGP_CASTEiJ_G0017274.1 mouse_genomes_project 11 313519 318966 + Pla2g3 protein_coding retained_intron MGP_CASTEiJ_T0006063.1 MGP_CASTEiJ_G0005077.1 mouse_genomes_project 11 43111620 43116481 + 4930597A21Rik lincRNA lincRNA MGP_CASTEiJ_T0009425.1 MGP_CASTEiJ_G0007613.1 mouse_genomes_project 11 48504232 48504309 + Gm23813 miRNA miRNA MGP_CASTEiJ_T0031653.1 MGP_CASTEiJ_G0018366.1 mouse_genomes_project 11 100736577 100740729 + MGP_CASTEiJ_P0031653 Pnmt protein_coding protein_coding MGP_CASTEiJ_T0031654.1 MGP_CASTEiJ_G0018366.1 mouse_genomes_project 11 100739258 100740025 + Pnmt protein_coding processed_transcript MGP_CASTEiJ_T0012409.1 MGP_CASTEiJ_G0010572.1 mouse_genomes_project 11 115583319 115584162 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016445.1 MGP_CASTEiJ_G0014476.1 mouse_genomes_project 11 26973144 26975839 - A630052C17Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016518.1 MGP_CASTEiJ_G0014516.1 mouse_genomes_project 11 99927607 99946384 - Gm11613 processed_transcript processed_transcript MGP_CASTEiJ_T0027080.1 MGP_CASTEiJ_G0017281.1 mouse_genomes_project 11 753123 758338 + MGP_CASTEiJ_P0027080 Dusp18 protein_coding protein_coding MGP_CASTEiJ_T0027081.1 MGP_CASTEiJ_G0017281.1 mouse_genomes_project 11 753123 760249 + MGP_CASTEiJ_P0027081 Dusp18 protein_coding protein_coding MGP_CASTEiJ_T0030185.1 MGP_CASTEiJ_G0018026.1 mouse_genomes_project 11 76189847 76207342 + MGP_CASTEiJ_P0030185 Inpp5k protein_coding protein_coding MGP_CASTEiJ_T0030186.1 MGP_CASTEiJ_G0018026.1 mouse_genomes_project 11 76189888 76207334 + Inpp5k protein_coding retained_intron MGP_CASTEiJ_T0030187.1 MGP_CASTEiJ_G0018026.1 mouse_genomes_project 11 76189896 76194129 + Inpp5k protein_coding retained_intron MGP_CASTEiJ_T0030188.1 MGP_CASTEiJ_G0018026.1 mouse_genomes_project 11 76189914 76207336 + MGP_CASTEiJ_P0030188 Inpp5k protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030189.1 MGP_CASTEiJ_G0018026.1 mouse_genomes_project 11 76197459 76205745 + Inpp5k protein_coding retained_intron MGP_CASTEiJ_T0030190.1 MGP_CASTEiJ_G0018026.1 mouse_genomes_project 11 76205254 76206201 + Inpp5k protein_coding processed_transcript MGP_CASTEiJ_T0030191.1 MGP_CASTEiJ_G0018026.1 mouse_genomes_project 11 76205314 76206334 + MGP_CASTEiJ_P0030191 Inpp5k protein_coding protein_coding MGP_CASTEiJ_T0027868.1 MGP_CASTEiJ_G0017449.1 mouse_genomes_project 11 30240344 30240947 + MGP_CASTEiJ_P0027868 Hbq1a protein_coding protein_coding MGP_CASTEiJ_T0028732.1 MGP_CASTEiJ_G0017695.1 mouse_genomes_project 11 58401394 58419774 + MGP_CASTEiJ_P0028732 Trim17 protein_coding protein_coding MGP_CASTEiJ_T0028734.1 MGP_CASTEiJ_G0017695.1 mouse_genomes_project 11 58410509 58419774 + MGP_CASTEiJ_P0028734 Trim17 protein_coding protein_coding MGP_CASTEiJ_T0003024.1 MGP_CASTEiJ_G0002818.1 mouse_genomes_project 11 16321802 16323138 + Gm16141 antisense antisense MGP_CASTEiJ_T0031854.1 MGP_CASTEiJ_G0018455.1 mouse_genomes_project 11 102987053 102990867 + MGP_CASTEiJ_P0031854 Gast protein_coding protein_coding MGP_CASTEiJ_T0032397.1 MGP_CASTEiJ_G0018558.1 mouse_genomes_project 11 105949509 105966009 + Nmt1 protein_coding processed_transcript MGP_CASTEiJ_T0032398.1 MGP_CASTEiJ_G0018558.1 mouse_genomes_project 11 105949665 105990799 + MGP_CASTEiJ_P0032398 Nmt1 protein_coding protein_coding MGP_CASTEiJ_T0032399.1 MGP_CASTEiJ_G0018558.1 mouse_genomes_project 11 105949904 105978487 + Nmt1 protein_coding processed_transcript MGP_CASTEiJ_T0030821.1 MGP_CASTEiJ_G0018177.1 mouse_genomes_project 11 85414102 85435509 - MGP_CASTEiJ_P0030821 Gm11437 protein_coding protein_coding MGP_CASTEiJ_T0030822.1 MGP_CASTEiJ_G0018177.1 mouse_genomes_project 11 85414118 85448362 - MGP_CASTEiJ_P0030822 Gm11437 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030823.1 MGP_CASTEiJ_G0018177.1 mouse_genomes_project 11 85414118 85448362 - MGP_CASTEiJ_P0030823 Gm11437 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028481.1 MGP_CASTEiJ_G0017617.1 mouse_genomes_project 11 52717071 52722249 - MGP_CASTEiJ_P0028481 Il13 protein_coding protein_coding MGP_CASTEiJ_T0031690.1 MGP_CASTEiJ_G0018377.1 mouse_genomes_project 11 101172282 101185152 + MGP_CASTEiJ_P0031690 Psmd3 protein_coding protein_coding MGP_CASTEiJ_T0031691.1 MGP_CASTEiJ_G0018377.1 mouse_genomes_project 11 101172293 101181627 + Psmd3 protein_coding retained_intron MGP_CASTEiJ_T0031692.1 MGP_CASTEiJ_G0018377.1 mouse_genomes_project 11 101172319 101184182 + Psmd3 protein_coding retained_intron MGP_CASTEiJ_T0031693.1 MGP_CASTEiJ_G0018377.1 mouse_genomes_project 11 101172376 101185161 + MGP_CASTEiJ_P0031693 Psmd3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031694.1 MGP_CASTEiJ_G0018377.1 mouse_genomes_project 11 101177500 101182961 + MGP_CASTEiJ_P0031694 Psmd3 protein_coding protein_coding MGP_CASTEiJ_T0031695.1 MGP_CASTEiJ_G0018377.1 mouse_genomes_project 11 101179550 101180579 + Psmd3 protein_coding retained_intron MGP_CASTEiJ_T0028974.1 MGP_CASTEiJ_G0017748.1 mouse_genomes_project 11 61070088 61075645 - MGP_CASTEiJ_P0028974 Rnf112 protein_coding protein_coding MGP_CASTEiJ_T0028975.1 MGP_CASTEiJ_G0017748.1 mouse_genomes_project 11 61070089 61075746 - MGP_CASTEiJ_P0028975 Rnf112 protein_coding protein_coding MGP_CASTEiJ_T0028976.1 MGP_CASTEiJ_G0017748.1 mouse_genomes_project 11 61071047 61075925 - MGP_CASTEiJ_P0028976 Rnf112 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028977.1 MGP_CASTEiJ_G0017748.1 mouse_genomes_project 11 61073685 61075771 - Rnf112 protein_coding processed_transcript MGP_CASTEiJ_T0028978.1 MGP_CASTEiJ_G0017748.1 mouse_genomes_project 11 61073903 61075559 - Rnf112 protein_coding processed_transcript MGP_CASTEiJ_T0028979.1 MGP_CASTEiJ_G0017748.1 mouse_genomes_project 11 61074375 61075582 - Rnf112 protein_coding processed_transcript MGP_CASTEiJ_T0028980.1 MGP_CASTEiJ_G0017748.1 mouse_genomes_project 11 61074556 61075573 - Rnf112 protein_coding processed_transcript MGP_CASTEiJ_T0012318.1 MGP_CASTEiJ_G0010481.1 mouse_genomes_project 11 77128770 77129281 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030814.1 MGP_CASTEiJ_G0018175.1 mouse_genomes_project 11 85341886 85392529 - MGP_CASTEiJ_P0030814 Tada2a protein_coding protein_coding MGP_CASTEiJ_T0030815.1 MGP_CASTEiJ_G0018175.1 mouse_genomes_project 11 85342497 85345926 - Tada2a protein_coding processed_transcript MGP_CASTEiJ_T0030816.1 MGP_CASTEiJ_G0018175.1 mouse_genomes_project 11 85342602 85356891 - MGP_CASTEiJ_P0030816 Tada2a protein_coding protein_coding MGP_CASTEiJ_T0030817.1 MGP_CASTEiJ_G0018175.1 mouse_genomes_project 11 85345005 85350637 - Tada2a protein_coding processed_transcript MGP_CASTEiJ_T0030818.1 MGP_CASTEiJ_G0018175.1 mouse_genomes_project 11 85348619 85350689 - Tada2a protein_coding processed_transcript MGP_CASTEiJ_T0033496.1 MGP_CASTEiJ_G0018776.1 mouse_genomes_project 11 123249364 123255466 - MGP_CASTEiJ_P0033496 Cbx8 protein_coding protein_coding MGP_CASTEiJ_T0033497.1 MGP_CASTEiJ_G0018776.1 mouse_genomes_project 11 123253551 123255328 - Cbx8 protein_coding processed_transcript MGP_CASTEiJ_T0033498.1 MGP_CASTEiJ_G0018776.1 mouse_genomes_project 11 123253682 123255408 - Cbx8 protein_coding processed_transcript MGP_CASTEiJ_T0028878.1 MGP_CASTEiJ_G0017727.1 mouse_genomes_project 11 59962297 59999419 + MGP_CASTEiJ_P0028878 Gid4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028879.1 MGP_CASTEiJ_G0017727.1 mouse_genomes_project 11 59962414 59991626 + MGP_CASTEiJ_P0028879 Gid4 protein_coding protein_coding MGP_CASTEiJ_T0033090.1 MGP_CASTEiJ_G0018703.1 mouse_genomes_project 11 119694269 119733452 + MGP_CASTEiJ_P0033090 Tmem94 protein_coding protein_coding MGP_CASTEiJ_T0033091.1 MGP_CASTEiJ_G0018703.1 mouse_genomes_project 11 119694278 119719871 + MGP_CASTEiJ_P0033091 Tmem94 protein_coding protein_coding MGP_CASTEiJ_T0033092.1 MGP_CASTEiJ_G0018703.1 mouse_genomes_project 11 119694279 119720195 + MGP_CASTEiJ_P0033092 Tmem94 protein_coding protein_coding MGP_CASTEiJ_T0033093.1 MGP_CASTEiJ_G0018703.1 mouse_genomes_project 11 119694290 119720114 + MGP_CASTEiJ_P0033093 Tmem94 protein_coding protein_coding MGP_CASTEiJ_T0033094.1 MGP_CASTEiJ_G0018703.1 mouse_genomes_project 11 119695561 119706261 + Tmem94 protein_coding processed_transcript MGP_CASTEiJ_T0033095.1 MGP_CASTEiJ_G0018703.1 mouse_genomes_project 11 119704653 119733119 + MGP_CASTEiJ_P0033095 Tmem94 protein_coding protein_coding MGP_CASTEiJ_T0033096.1 MGP_CASTEiJ_G0018703.1 mouse_genomes_project 11 119713420 119733119 + MGP_CASTEiJ_P0033096 Tmem94 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033097.1 MGP_CASTEiJ_G0018703.1 mouse_genomes_project 11 119723139 119726049 + MGP_CASTEiJ_P0033097 Tmem94 protein_coding protein_coding MGP_CASTEiJ_T0033871.1 MGP_CASTEiJ_G0018845.1 mouse_genomes_project 11 125612428 125618357 - MGP_CASTEiJ_P0033871 BC017643 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033872.1 MGP_CASTEiJ_G0018845.1 mouse_genomes_project 11 125612858 125617999 - BC017643 protein_coding retained_intron MGP_CASTEiJ_T0033873.1 MGP_CASTEiJ_G0018845.1 mouse_genomes_project 11 125613142 125616583 - BC017643 protein_coding retained_intron MGP_CASTEiJ_T0033874.1 MGP_CASTEiJ_G0018845.1 mouse_genomes_project 11 125613421 125618308 - MGP_CASTEiJ_P0033874 BC017643 protein_coding protein_coding MGP_CASTEiJ_T0033875.1 MGP_CASTEiJ_G0018845.1 mouse_genomes_project 11 125613760 125618448 - MGP_CASTEiJ_P0033875 BC017643 protein_coding protein_coding MGP_CASTEiJ_T0033876.1 MGP_CASTEiJ_G0018845.1 mouse_genomes_project 11 125613787 125618535 - MGP_CASTEiJ_P0033876 BC017643 protein_coding protein_coding MGP_CASTEiJ_T0033877.1 MGP_CASTEiJ_G0018845.1 mouse_genomes_project 11 125615960 125618436 - BC017643 protein_coding processed_transcript MGP_CASTEiJ_T0003209.1 MGP_CASTEiJ_G0002972.1 mouse_genomes_project 11 110199336 110199557 + antisense antisense MGP_CASTEiJ_T0009504.1 MGP_CASTEiJ_G0007692.1 mouse_genomes_project 11 105041055 105041166 - Mir8101 miRNA miRNA MGP_CASTEiJ_T0000810.1 MGP_CASTEiJ_G0000750.1 mouse_genomes_project 11 43843508 43864917 - TEC TEC MGP_CASTEiJ_T0027391.1 MGP_CASTEiJ_G0017350.1 mouse_genomes_project 11 4278186 4285959 - MGP_CASTEiJ_P0027391 Igfbp3 protein_coding protein_coding MGP_CASTEiJ_T0027392.1 MGP_CASTEiJ_G0017350.1 mouse_genomes_project 11 4279761 4285985 - MGP_CASTEiJ_P0027392 Igfbp3 protein_coding protein_coding MGP_CASTEiJ_T0099251.1 MGP_CASTEiJ_G0036164.1 mouse_genomes_project 11 79616678 79616765 + Gm23219 snRNA snRNA MGP_CASTEiJ_T0029907.1 MGP_CASTEiJ_G0017942.1 mouse_genomes_project 11 72578777 72626264 - MGP_CASTEiJ_P0029907 Slc13a5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029908.1 MGP_CASTEiJ_G0017942.1 mouse_genomes_project 11 72578777 72626264 - MGP_CASTEiJ_P0029908 Slc13a5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029909.1 MGP_CASTEiJ_G0017942.1 mouse_genomes_project 11 72601095 72625632 - MGP_CASTEiJ_P0029909 Slc13a5 protein_coding protein_coding MGP_CASTEiJ_T0029910.1 MGP_CASTEiJ_G0017942.1 mouse_genomes_project 11 72619354 72625632 - MGP_CASTEiJ_P0029910 Slc13a5 protein_coding protein_coding MGP_CASTEiJ_T0029911.1 MGP_CASTEiJ_G0017942.1 mouse_genomes_project 11 72620659 72626241 - MGP_CASTEiJ_P0029911 Slc13a5 protein_coding protein_coding MGP_CASTEiJ_T0031886.1 MGP_CASTEiJ_G0018461.1 mouse_genomes_project 11 103107584 103121108 + MGP_CASTEiJ_P0031886 Klhl10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031887.1 MGP_CASTEiJ_G0018461.1 mouse_genomes_project 11 103108358 103121101 + MGP_CASTEiJ_P0031887 Klhl10 protein_coding protein_coding MGP_CASTEiJ_T0031888.1 MGP_CASTEiJ_G0018461.1 mouse_genomes_project 11 103108368 103112367 + MGP_CASTEiJ_P0031888 Klhl10 protein_coding protein_coding MGP_CASTEiJ_T0031889.1 MGP_CASTEiJ_G0018461.1 mouse_genomes_project 11 103108436 103121108 + MGP_CASTEiJ_P0031889 Klhl10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029525.1 MGP_CASTEiJ_G0017869.1 mouse_genomes_project 11 69963050 69966903 + MGP_CASTEiJ_P0029525 Plscr3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029526.1 MGP_CASTEiJ_G0017869.1 mouse_genomes_project 11 69963061 69964820 + MGP_CASTEiJ_P0029526 Plscr3 protein_coding protein_coding MGP_CASTEiJ_T0027676.1 MGP_CASTEiJ_G0017411.1 mouse_genomes_project 11 21676979 21784376 + MGP_CASTEiJ_P0027676 Bcl11a protein_coding protein_coding MGP_CASTEiJ_T0027677.1 MGP_CASTEiJ_G0017411.1 mouse_genomes_project 11 21676979 21784376 + MGP_CASTEiJ_P0027677 Bcl11a protein_coding unknown_likely_coding MGP_CASTEiJ_T0027678.1 MGP_CASTEiJ_G0017411.1 mouse_genomes_project 11 21678526 21784581 + MGP_CASTEiJ_P0027678 Bcl11a protein_coding protein_coding MGP_CASTEiJ_T0027679.1 MGP_CASTEiJ_G0017411.1 mouse_genomes_project 11 21678617 21693326 + Bcl11a protein_coding retained_intron MGP_CASTEiJ_T0027680.1 MGP_CASTEiJ_G0017411.1 mouse_genomes_project 11 21678643 21775638 + MGP_CASTEiJ_P0027680 Bcl11a protein_coding protein_coding MGP_CASTEiJ_T0027681.1 MGP_CASTEiJ_G0017411.1 mouse_genomes_project 11 21678834 21776114 + MGP_CASTEiJ_P0027681 Bcl11a protein_coding unknown_likely_coding MGP_CASTEiJ_T0027682.1 MGP_CASTEiJ_G0017411.1 mouse_genomes_project 11 21748777 21770469 + Bcl11a protein_coding processed_transcript MGP_CASTEiJ_T0030730.1 MGP_CASTEiJ_G0018145.1 mouse_genomes_project 11 84050728 84051551 + Slfn5 protein_coding processed_transcript MGP_CASTEiJ_T0030731.1 MGP_CASTEiJ_G0018145.1 mouse_genomes_project 11 84051475 84059450 + MGP_CASTEiJ_P0030731 Slfn5 protein_coding protein_coding MGP_CASTEiJ_T0030732.1 MGP_CASTEiJ_G0018145.1 mouse_genomes_project 11 84051482 84062349 + MGP_CASTEiJ_P0030732 Slfn5 protein_coding protein_coding MGP_CASTEiJ_T0030733.1 MGP_CASTEiJ_G0018145.1 mouse_genomes_project 11 84054060 84061344 + MGP_CASTEiJ_P0030733 Slfn5 protein_coding protein_coding MGP_CASTEiJ_T0009419.1 MGP_CASTEiJ_G0007607.1 mouse_genomes_project 11 33662859 33662969 + Mir218-2 miRNA miRNA MGP_CASTEiJ_T0003084.1 MGP_CASTEiJ_G0002872.1 mouse_genomes_project 11 62260756 62261750 - Gm12279 antisense antisense MGP_CASTEiJ_T0029445.1 MGP_CASTEiJ_G0017850.1 mouse_genomes_project 11 69724117 69750048 + MGP_CASTEiJ_P0029445 Fxr2 protein_coding protein_coding MGP_CASTEiJ_T0029446.1 MGP_CASTEiJ_G0017850.1 mouse_genomes_project 11 69724454 69750056 + MGP_CASTEiJ_P0029446 Fxr2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029447.1 MGP_CASTEiJ_G0017850.1 mouse_genomes_project 11 69732854 69734117 + Fxr2 protein_coding processed_transcript MGP_CASTEiJ_T0029448.1 MGP_CASTEiJ_G0017850.1 mouse_genomes_project 11 69736883 69744476 + Fxr2 protein_coding processed_transcript MGP_CASTEiJ_T0029449.1 MGP_CASTEiJ_G0017850.1 mouse_genomes_project 11 69744279 69747829 + Fxr2 protein_coding processed_transcript MGP_CASTEiJ_T0029450.1 MGP_CASTEiJ_G0017850.1 mouse_genomes_project 11 69747876 69748470 + Fxr2 protein_coding processed_transcript MGP_CASTEiJ_T0029451.1 MGP_CASTEiJ_G0017850.1 mouse_genomes_project 11 69749070 69749674 + Fxr2 protein_coding processed_transcript MGP_CASTEiJ_T0098737.1 MGP_CASTEiJ_G0035668.1 mouse_genomes_project 11 69413522 69413666 - Gm23386 scaRNA scaRNA MGP_CASTEiJ_T0010980.1 MGP_CASTEiJ_G0009168.1 mouse_genomes_project 11 97013896 97014012 + Gm24877 misc_RNA misc_RNA MGP_CASTEiJ_T0030200.1 MGP_CASTEiJ_G0018028.1 mouse_genomes_project 11 76240437 76268725 + MGP_CASTEiJ_P0030200 Crk protein_coding protein_coding MGP_CASTEiJ_T0030201.1 MGP_CASTEiJ_G0018028.1 mouse_genomes_project 11 76240462 76266314 + MGP_CASTEiJ_P0030201 Crk protein_coding protein_coding MGP_CASTEiJ_T0030202.1 MGP_CASTEiJ_G0018028.1 mouse_genomes_project 11 76240489 76263454 + MGP_CASTEiJ_P0030202 Crk protein_coding protein_coding MGP_CASTEiJ_T0030203.1 MGP_CASTEiJ_G0018028.1 mouse_genomes_project 11 76240567 76268740 + MGP_CASTEiJ_P0030203 Crk protein_coding unknown_likely_coding MGP_CASTEiJ_T0030204.1 MGP_CASTEiJ_G0018028.1 mouse_genomes_project 11 76240567 76271092 + MGP_CASTEiJ_P0030204 Crk protein_coding protein_coding MGP_CASTEiJ_T0030205.1 MGP_CASTEiJ_G0018028.1 mouse_genomes_project 11 76240720 76263402 + MGP_CASTEiJ_P0030205 Crk protein_coding protein_coding MGP_CASTEiJ_T0028451.1 MGP_CASTEiJ_G0017610.1 mouse_genomes_project 11 52532933 52543462 + MGP_CASTEiJ_P0028451 Shroom1 protein_coding protein_coding MGP_CASTEiJ_T0028452.1 MGP_CASTEiJ_G0017610.1 mouse_genomes_project 11 52532958 52542996 + MGP_CASTEiJ_P0028452 Shroom1 protein_coding protein_coding MGP_CASTEiJ_T0028453.1 MGP_CASTEiJ_G0017610.1 mouse_genomes_project 11 52532974 52543451 + Shroom1 protein_coding retained_intron MGP_CASTEiJ_T0028454.1 MGP_CASTEiJ_G0017610.1 mouse_genomes_project 11 52532977 52543199 + Shroom1 protein_coding retained_intron MGP_CASTEiJ_T0028455.1 MGP_CASTEiJ_G0017610.1 mouse_genomes_project 11 52533010 52553707 + MGP_CASTEiJ_P0028455 Shroom1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028456.1 MGP_CASTEiJ_G0017610.1 mouse_genomes_project 11 52533010 52553707 + MGP_CASTEiJ_P0028456 Shroom1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028457.1 MGP_CASTEiJ_G0017610.1 mouse_genomes_project 11 52533010 52553707 + MGP_CASTEiJ_P0028457 Shroom1 protein_coding protein_coding MGP_CASTEiJ_T0028458.1 MGP_CASTEiJ_G0017610.1 mouse_genomes_project 11 52541193 52541551 + Shroom1 protein_coding processed_transcript MGP_CASTEiJ_T0028123.1 MGP_CASTEiJ_G0017523.1 mouse_genomes_project 11 47559874 47574025 + MGP_CASTEiJ_P0028123 protein_coding protein_coding MGP_CASTEiJ_T0028124.1 MGP_CASTEiJ_G0017523.1 mouse_genomes_project 11 47559880 47563827 + MGP_CASTEiJ_P0028124 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028125.1 MGP_CASTEiJ_G0017523.1 mouse_genomes_project 11 47559997 47576458 + MGP_CASTEiJ_P0028125 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028126.1 MGP_CASTEiJ_G0017523.1 mouse_genomes_project 11 47559997 47576458 + MGP_CASTEiJ_P0028126 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028127.1 MGP_CASTEiJ_G0017523.1 mouse_genomes_project 11 47560923 47567975 + MGP_CASTEiJ_P0028127 protein_coding protein_coding MGP_CASTEiJ_T0028128.1 MGP_CASTEiJ_G0017523.1 mouse_genomes_project 11 47561213 47568032 + MGP_CASTEiJ_P0028128 protein_coding protein_coding MGP_CASTEiJ_T0028129.1 MGP_CASTEiJ_G0017523.1 mouse_genomes_project 11 47561246 47575438 + MGP_CASTEiJ_P0028129 protein_coding protein_coding MGP_CASTEiJ_T0028130.1 MGP_CASTEiJ_G0017523.1 mouse_genomes_project 11 47571381 47576461 + protein_coding retained_intron MGP_CASTEiJ_T0032345.1 MGP_CASTEiJ_G0018547.1 mouse_genomes_project 11 105562931 105576790 - MGP_CASTEiJ_P0032345 Ccdc43 protein_coding protein_coding MGP_CASTEiJ_T0032346.1 MGP_CASTEiJ_G0018547.1 mouse_genomes_project 11 105562933 105576742 - MGP_CASTEiJ_P0032346 Ccdc43 protein_coding protein_coding MGP_CASTEiJ_T0032347.1 MGP_CASTEiJ_G0018547.1 mouse_genomes_project 11 105564486 105576743 - MGP_CASTEiJ_P0032347 Ccdc43 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032348.1 MGP_CASTEiJ_G0018547.1 mouse_genomes_project 11 105564599 105576544 - Ccdc43 protein_coding processed_transcript MGP_CASTEiJ_T0032349.1 MGP_CASTEiJ_G0018547.1 mouse_genomes_project 11 105567590 105576742 - Ccdc43 protein_coding processed_transcript MGP_CASTEiJ_T0032350.1 MGP_CASTEiJ_G0018547.1 mouse_genomes_project 11 105568993 105576678 - Ccdc43 protein_coding processed_transcript MGP_CASTEiJ_T0012343.1 MGP_CASTEiJ_G0010506.1 mouse_genomes_project 11 86551309 86551767 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016470.1 MGP_CASTEiJ_G0014490.1 mouse_genomes_project 11 62319868 62321798 + 2410006H16Rik processed_transcript processed_transcript MGP_CASTEiJ_T0027716.1 MGP_CASTEiJ_G0017419.1 mouse_genomes_project 11 26932865 26965970 + Pnpt1 protein_coding processed_transcript MGP_CASTEiJ_T0027717.1 MGP_CASTEiJ_G0017419.1 mouse_genomes_project 11 26932869 26937643 + Pnpt1 protein_coding processed_transcript MGP_CASTEiJ_T0027718.1 MGP_CASTEiJ_G0017419.1 mouse_genomes_project 11 26932869 26965987 + MGP_CASTEiJ_P0027718 Pnpt1 protein_coding protein_coding MGP_CASTEiJ_T0027719.1 MGP_CASTEiJ_G0017419.1 mouse_genomes_project 11 26940372 26947595 + Pnpt1 protein_coding processed_transcript MGP_CASTEiJ_T0012156.1 MGP_CASTEiJ_G0010319.1 mouse_genomes_project 11 15897264 15898513 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0026999.1 MGP_CASTEiJ_G0017269.1 mouse_genomes_project 11 54454 71836 - MGP_CASTEiJ_P0026999 Drg1 protein_coding protein_coding MGP_CASTEiJ_T0027000.1 MGP_CASTEiJ_G0017269.1 mouse_genomes_project 11 54644 58849 - Drg1 protein_coding retained_intron MGP_CASTEiJ_T0027001.1 MGP_CASTEiJ_G0017269.1 mouse_genomes_project 11 60416 67956 - Drg1 protein_coding retained_intron MGP_CASTEiJ_T0027002.1 MGP_CASTEiJ_G0017269.1 mouse_genomes_project 11 60517 71845 - MGP_CASTEiJ_P0027002 Drg1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027003.1 MGP_CASTEiJ_G0017269.1 mouse_genomes_project 11 62156 71835 - Drg1 protein_coding processed_transcript MGP_CASTEiJ_T0027004.1 MGP_CASTEiJ_G0017269.1 mouse_genomes_project 11 63299 71858 - Drg1 protein_coding retained_intron MGP_CASTEiJ_T0027005.1 MGP_CASTEiJ_G0017269.1 mouse_genomes_project 11 64749 71836 - MGP_CASTEiJ_P0027005 Drg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027275.1 MGP_CASTEiJ_G0017324.1 mouse_genomes_project 11 2784143 2793950 - MGP_CASTEiJ_P0027275 Polm protein_coding protein_coding MGP_CASTEiJ_T0027276.1 MGP_CASTEiJ_G0017324.1 mouse_genomes_project 11 2784144 2794177 - MGP_CASTEiJ_P0027276 Polm protein_coding protein_coding MGP_CASTEiJ_T0027277.1 MGP_CASTEiJ_G0017324.1 mouse_genomes_project 11 2785498 2786484 - Polm protein_coding processed_transcript MGP_CASTEiJ_T0027278.1 MGP_CASTEiJ_G0017324.1 mouse_genomes_project 11 2790946 2792638 - Polm protein_coding processed_transcript MGP_CASTEiJ_T0027279.1 MGP_CASTEiJ_G0017324.1 mouse_genomes_project 11 2792423 2793913 - Polm protein_coding processed_transcript MGP_CASTEiJ_T0027280.1 MGP_CASTEiJ_G0017324.1 mouse_genomes_project 11 2792446 2793954 - Polm protein_coding processed_transcript MGP_CASTEiJ_T0012233.1 MGP_CASTEiJ_G0010396.1 mouse_genomes_project 11 45532910 45533256 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000806.1 MGP_CASTEiJ_G0000746.1 mouse_genomes_project 11 16430887 16431749 - TEC TEC MGP_CASTEiJ_T0012252.1 MGP_CASTEiJ_G0010415.1 mouse_genomes_project 11 53015895 53016294 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031743.1 MGP_CASTEiJ_G0018387.1 mouse_genomes_project 11 101433193 101487745 + MGP_CASTEiJ_P0031743 Rara protein_coding protein_coding MGP_CASTEiJ_T0031744.1 MGP_CASTEiJ_G0018387.1 mouse_genomes_project 11 101445330 101487745 + MGP_CASTEiJ_P0031744 Rara protein_coding protein_coding MGP_CASTEiJ_T0031745.1 MGP_CASTEiJ_G0018387.1 mouse_genomes_project 11 101445350 101488529 + MGP_CASTEiJ_P0031745 Rara protein_coding protein_coding MGP_CASTEiJ_T0031746.1 MGP_CASTEiJ_G0018387.1 mouse_genomes_project 11 101445960 101459178 + Rara protein_coding processed_transcript MGP_CASTEiJ_T0031747.1 MGP_CASTEiJ_G0018387.1 mouse_genomes_project 11 101447364 101488529 + MGP_CASTEiJ_P0031747 Rara protein_coding protein_coding MGP_CASTEiJ_T0031748.1 MGP_CASTEiJ_G0018387.1 mouse_genomes_project 11 101447365 101459307 + Rara protein_coding processed_transcript MGP_CASTEiJ_T0031749.1 MGP_CASTEiJ_G0018387.1 mouse_genomes_project 11 101471703 101488529 + MGP_CASTEiJ_P0031749 Rara protein_coding protein_coding MGP_CASTEiJ_T0012310.1 MGP_CASTEiJ_G0010473.1 mouse_genomes_project 11 74233686 74233881 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028034.1 MGP_CASTEiJ_G0017498.1 mouse_genomes_project 11 42910518 42924711 + MGP_CASTEiJ_P0028034 Il12b protein_coding unknown_likely_coding MGP_CASTEiJ_T0028035.1 MGP_CASTEiJ_G0017498.1 mouse_genomes_project 11 42911415 42925362 + MGP_CASTEiJ_P0028035 Il12b protein_coding protein_coding MGP_CASTEiJ_T0028036.1 MGP_CASTEiJ_G0017498.1 mouse_genomes_project 11 42911415 42925384 + MGP_CASTEiJ_P0028036 Il12b protein_coding protein_coding MGP_CASTEiJ_T0003043.1 MGP_CASTEiJ_G0002836.1 mouse_genomes_project 11 44732212 44733336 - Gm16034 antisense antisense MGP_CASTEiJ_T0033828.1 MGP_CASTEiJ_G0018835.1 mouse_genomes_project 11 125323601 125333914 + MGP_CASTEiJ_P0033828 Slc16a3 protein_coding protein_coding MGP_CASTEiJ_T0033829.1 MGP_CASTEiJ_G0018835.1 mouse_genomes_project 11 125324174 125331883 + MGP_CASTEiJ_P0033829 Slc16a3 protein_coding protein_coding MGP_CASTEiJ_T0033830.1 MGP_CASTEiJ_G0018835.1 mouse_genomes_project 11 125324188 125334139 + MGP_CASTEiJ_P0033830 Slc16a3 protein_coding protein_coding MGP_CASTEiJ_T0033831.1 MGP_CASTEiJ_G0018835.1 mouse_genomes_project 11 125324190 125333343 + MGP_CASTEiJ_P0033831 Slc16a3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033832.1 MGP_CASTEiJ_G0018835.1 mouse_genomes_project 11 125324192 125331997 + MGP_CASTEiJ_P0033832 Slc16a3 protein_coding protein_coding MGP_CASTEiJ_T0033833.1 MGP_CASTEiJ_G0018835.1 mouse_genomes_project 11 125324202 125336052 + MGP_CASTEiJ_P0033833 Slc16a3 protein_coding protein_coding MGP_CASTEiJ_T0033834.1 MGP_CASTEiJ_G0018835.1 mouse_genomes_project 11 125325811 125330409 + MGP_CASTEiJ_P0033834 Slc16a3 protein_coding protein_coding MGP_CASTEiJ_T0033835.1 MGP_CASTEiJ_G0018835.1 mouse_genomes_project 11 125326261 125329347 + Slc16a3 protein_coding processed_transcript MGP_CASTEiJ_T0033836.1 MGP_CASTEiJ_G0018835.1 mouse_genomes_project 11 125330361 125331367 + Slc16a3 protein_coding retained_intron MGP_CASTEiJ_T0009456.1 MGP_CASTEiJ_G0007644.1 mouse_genomes_project 11 70381363 70381457 + Mir195a miRNA miRNA MGP_CASTEiJ_T0028688.1 MGP_CASTEiJ_G0017671.1 mouse_genomes_project 11 57816401 57823090 - MGP_CASTEiJ_P0028688 4930504O13Rik protein_coding protein_coding MGP_CASTEiJ_T0012344.1 MGP_CASTEiJ_G0010507.1 mouse_genomes_project 11 87324473 87324952 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029795.1 MGP_CASTEiJ_G0017921.1 mouse_genomes_project 11 70892742 70905687 - MGP_CASTEiJ_P0029795 Inca1 protein_coding protein_coding MGP_CASTEiJ_T0029796.1 MGP_CASTEiJ_G0017921.1 mouse_genomes_project 11 70892742 70905687 - MGP_CASTEiJ_P0029796 Inca1 protein_coding protein_coding MGP_CASTEiJ_T0029797.1 MGP_CASTEiJ_G0017921.1 mouse_genomes_project 11 70892742 70905687 - MGP_CASTEiJ_P0029797 Inca1 protein_coding protein_coding MGP_CASTEiJ_T0029798.1 MGP_CASTEiJ_G0017921.1 mouse_genomes_project 11 70892742 70905687 - MGP_CASTEiJ_P0029798 Inca1 protein_coding protein_coding MGP_CASTEiJ_T0029799.1 MGP_CASTEiJ_G0017921.1 mouse_genomes_project 11 70892750 70905641 - MGP_CASTEiJ_P0029799 Inca1 protein_coding protein_coding MGP_CASTEiJ_T0028566.1 MGP_CASTEiJ_G0017635.1 mouse_genomes_project 11 53998631 54020011 - MGP_CASTEiJ_P0028566 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028567.1 MGP_CASTEiJ_G0017635.1 mouse_genomes_project 11 53998857 54020029 - MGP_CASTEiJ_P0028567 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028568.1 MGP_CASTEiJ_G0017635.1 mouse_genomes_project 11 53999933 54009700 - protein_coding retained_intron MGP_CASTEiJ_T0028569.1 MGP_CASTEiJ_G0017635.1 mouse_genomes_project 11 53999973 54020032 - protein_coding processed_transcript MGP_CASTEiJ_T0028570.1 MGP_CASTEiJ_G0017635.1 mouse_genomes_project 11 54009387 54020008 - protein_coding retained_intron MGP_CASTEiJ_T0030985.1 MGP_CASTEiJ_G0018213.1 mouse_genomes_project 11 88868292 89036349 + MGP_CASTEiJ_P0030985 Tex14 protein_coding protein_coding MGP_CASTEiJ_T0030986.1 MGP_CASTEiJ_G0018213.1 mouse_genomes_project 11 88891432 88956640 + MGP_CASTEiJ_P0030986 Tex14 protein_coding protein_coding MGP_CASTEiJ_T0030987.1 MGP_CASTEiJ_G0018213.1 mouse_genomes_project 11 89010396 89035483 + MGP_CASTEiJ_P0030987 Tex14 protein_coding protein_coding MGP_CASTEiJ_T0030988.1 MGP_CASTEiJ_G0018213.1 mouse_genomes_project 11 89014321 89036345 + MGP_CASTEiJ_P0030988 Tex14 protein_coding protein_coding MGP_CASTEiJ_T0030989.1 MGP_CASTEiJ_G0018213.1 mouse_genomes_project 11 89020040 89036192 + Tex14 protein_coding processed_transcript MGP_CASTEiJ_T0012133.1 MGP_CASTEiJ_G0010296.1 mouse_genomes_project 11 6288539 6289346 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031664.1 MGP_CASTEiJ_G0018370.1 mouse_genomes_project 11 100805336 100822917 + MGP_CASTEiJ_P0031664 Grb7 protein_coding protein_coding MGP_CASTEiJ_T0031665.1 MGP_CASTEiJ_G0018370.1 mouse_genomes_project 11 100812628 100818997 + MGP_CASTEiJ_P0031665 Grb7 protein_coding protein_coding MGP_CASTEiJ_T0031666.1 MGP_CASTEiJ_G0018370.1 mouse_genomes_project 11 100813278 100822912 + Grb7 protein_coding retained_intron MGP_CASTEiJ_T0031667.1 MGP_CASTEiJ_G0018370.1 mouse_genomes_project 11 100813298 100822912 + Grb7 protein_coding retained_intron MGP_CASTEiJ_T0031668.1 MGP_CASTEiJ_G0018370.1 mouse_genomes_project 11 100819420 100821361 + Grb7 protein_coding retained_intron MGP_CASTEiJ_T0031669.1 MGP_CASTEiJ_G0018370.1 mouse_genomes_project 11 100821327 100822664 + Grb7 protein_coding retained_intron MGP_CASTEiJ_T0027133.1 MGP_CASTEiJ_G0017294.1 mouse_genomes_project 11 1045001 1072920 + Tbc1d10a protein_coding processed_transcript MGP_CASTEiJ_T0027134.1 MGP_CASTEiJ_G0017294.1 mouse_genomes_project 11 1045001 1073540 + MGP_CASTEiJ_P0027134 Tbc1d10a protein_coding protein_coding MGP_CASTEiJ_T0027135.1 MGP_CASTEiJ_G0017294.1 mouse_genomes_project 11 1045034 1073537 + MGP_CASTEiJ_P0027135 Tbc1d10a protein_coding protein_coding MGP_CASTEiJ_T0027136.1 MGP_CASTEiJ_G0017294.1 mouse_genomes_project 11 1063467 1068027 + Tbc1d10a protein_coding processed_transcript MGP_CASTEiJ_T0027137.1 MGP_CASTEiJ_G0017294.1 mouse_genomes_project 11 1070346 1071639 + Tbc1d10a protein_coding processed_transcript MGP_CASTEiJ_T0027138.1 MGP_CASTEiJ_G0017294.1 mouse_genomes_project 11 1070510 1071890 + Tbc1d10a protein_coding processed_transcript MGP_CASTEiJ_T0033085.1 MGP_CASTEiJ_G0018702.1 mouse_genomes_project 11 119550691 119607846 - MGP_CASTEiJ_P0033085 Grb2 protein_coding protein_coding MGP_CASTEiJ_T0033086.1 MGP_CASTEiJ_G0018702.1 mouse_genomes_project 11 119550691 119608073 - MGP_CASTEiJ_P0033086 Grb2 protein_coding protein_coding MGP_CASTEiJ_T0033087.1 MGP_CASTEiJ_G0018702.1 mouse_genomes_project 11 119550691 119617158 - MGP_CASTEiJ_P0033087 Grb2 protein_coding protein_coding MGP_CASTEiJ_T0033088.1 MGP_CASTEiJ_G0018702.1 mouse_genomes_project 11 119551290 119617137 - MGP_CASTEiJ_P0033088 Grb2 protein_coding protein_coding MGP_CASTEiJ_T0033089.1 MGP_CASTEiJ_G0018702.1 mouse_genomes_project 11 119556898 119608467 - MGP_CASTEiJ_P0033089 Grb2 protein_coding protein_coding MGP_CASTEiJ_T0012228.1 MGP_CASTEiJ_G0010391.1 mouse_genomes_project 11 42897115 42897275 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099254.1 MGP_CASTEiJ_G0036167.1 mouse_genomes_project 11 80504076 80504184 - Gm24887 snRNA snRNA MGP_CASTEiJ_T0009529.1 MGP_CASTEiJ_G0007717.1 mouse_genomes_project 11 124967797 124967851 - Mir6936 miRNA miRNA MGP_CASTEiJ_T0028639.1 MGP_CASTEiJ_G0017655.1 mouse_genomes_project 11 57086412 57095242 + MGP_CASTEiJ_P0028639 Sap30l protein_coding protein_coding MGP_CASTEiJ_T0028640.1 MGP_CASTEiJ_G0017655.1 mouse_genomes_project 11 57087016 57174116 + MGP_CASTEiJ_P0028640 Sap30l protein_coding unknown_likely_coding MGP_CASTEiJ_T0027998.1 MGP_CASTEiJ_G0017488.1 mouse_genomes_project 11 41567126 41576699 + Atp10b protein_coding processed_transcript MGP_CASTEiJ_T0027999.1 MGP_CASTEiJ_G0017488.1 mouse_genomes_project 11 41568838 41683702 + MGP_CASTEiJ_P0027999 Atp10b protein_coding protein_coding MGP_CASTEiJ_T0028000.1 MGP_CASTEiJ_G0017488.1 mouse_genomes_project 11 41569988 41705061 + MGP_CASTEiJ_P0028000 Atp10b protein_coding unknown_likely_coding MGP_CASTEiJ_T0028001.1 MGP_CASTEiJ_G0017488.1 mouse_genomes_project 11 41573080 41623171 + Atp10b protein_coding processed_transcript MGP_CASTEiJ_T0032831.1 MGP_CASTEiJ_G0018648.1 mouse_genomes_project 11 113673378 113753376 - MGP_CASTEiJ_P0032831 Abca5 protein_coding protein_coding MGP_CASTEiJ_T0032832.1 MGP_CASTEiJ_G0018648.1 mouse_genomes_project 11 113677284 113753349 - MGP_CASTEiJ_P0032832 Abca5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032833.1 MGP_CASTEiJ_G0018648.1 mouse_genomes_project 11 113677284 113753179 - MGP_CASTEiJ_P0032833 Abca5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032834.1 MGP_CASTEiJ_G0018648.1 mouse_genomes_project 11 113696787 113753320 - MGP_CASTEiJ_P0032834 Abca5 protein_coding protein_coding MGP_CASTEiJ_T0032835.1 MGP_CASTEiJ_G0018648.1 mouse_genomes_project 11 113722378 113753343 - Abca5 protein_coding retained_intron MGP_CASTEiJ_T0032836.1 MGP_CASTEiJ_G0018648.1 mouse_genomes_project 11 113733884 113753338 - MGP_CASTEiJ_P0032836 Abca5 protein_coding protein_coding MGP_CASTEiJ_T0032837.1 MGP_CASTEiJ_G0018648.1 mouse_genomes_project 11 113740191 113753414 - Abca5 protein_coding processed_transcript MGP_CASTEiJ_T0033714.1 MGP_CASTEiJ_G0018817.1 mouse_genomes_project 11 124950286 124950903 + MGP_CASTEiJ_P0033714 Npb protein_coding protein_coding MGP_CASTEiJ_T0033715.1 MGP_CASTEiJ_G0018817.1 mouse_genomes_project 11 124950286 124950903 + MGP_CASTEiJ_P0033715 Npb protein_coding protein_coding MGP_CASTEiJ_T0033716.1 MGP_CASTEiJ_G0018817.1 mouse_genomes_project 11 124950314 124950843 + MGP_CASTEiJ_P0033716 Npb protein_coding protein_coding MGP_CASTEiJ_T0003088.1 MGP_CASTEiJ_G0002875.1 mouse_genomes_project 11 62354390 62360214 + Lrrc75aos1 antisense antisense MGP_CASTEiJ_T0033043.1 MGP_CASTEiJ_G0018697.1 mouse_genomes_project 11 119464284 119487447 + MGP_CASTEiJ_P0033043 Nup85 protein_coding protein_coding MGP_CASTEiJ_T0033044.1 MGP_CASTEiJ_G0018697.1 mouse_genomes_project 11 119464375 119469742 + Nup85 protein_coding processed_transcript MGP_CASTEiJ_T0033045.1 MGP_CASTEiJ_G0018697.1 mouse_genomes_project 11 119469965 119485305 + MGP_CASTEiJ_P0033045 Nup85 protein_coding protein_coding MGP_CASTEiJ_T0033046.1 MGP_CASTEiJ_G0018697.1 mouse_genomes_project 11 119481668 119485501 + MGP_CASTEiJ_P0033046 Nup85 protein_coding protein_coding MGP_CASTEiJ_T0033047.1 MGP_CASTEiJ_G0018697.1 mouse_genomes_project 11 119483965 119484881 + Nup85 protein_coding processed_transcript MGP_CASTEiJ_T0033048.1 MGP_CASTEiJ_G0018697.1 mouse_genomes_project 11 119484557 119485496 + Nup85 protein_coding processed_transcript MGP_CASTEiJ_T0033049.1 MGP_CASTEiJ_G0018697.1 mouse_genomes_project 11 119485102 119487368 + Nup85 protein_coding processed_transcript MGP_CASTEiJ_T0033050.1 MGP_CASTEiJ_G0018697.1 mouse_genomes_project 11 119485209 119485740 + Nup85 protein_coding processed_transcript MGP_CASTEiJ_T0033051.1 MGP_CASTEiJ_G0018697.1 mouse_genomes_project 11 119486518 119487245 + Nup85 protein_coding processed_transcript MGP_CASTEiJ_T0099250.1 MGP_CASTEiJ_G0036163.1 mouse_genomes_project 11 77602573 77602723 + Gm22611 snRNA snRNA MGP_CASTEiJ_T0027185.1 MGP_CASTEiJ_G0017307.1 mouse_genomes_project 11 1780878 1799329 + MGP_CASTEiJ_P0027185 Nipsnap1 protein_coding protein_coding MGP_CASTEiJ_T0027186.1 MGP_CASTEiJ_G0017307.1 mouse_genomes_project 11 1780926 1798750 + MGP_CASTEiJ_P0027186 Nipsnap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027187.1 MGP_CASTEiJ_G0017307.1 mouse_genomes_project 11 1780932 1789963 + Nipsnap1 protein_coding processed_transcript MGP_CASTEiJ_T0027188.1 MGP_CASTEiJ_G0017307.1 mouse_genomes_project 11 1788792 1794275 + MGP_CASTEiJ_P0027188 Nipsnap1 protein_coding protein_coding MGP_CASTEiJ_T0027189.1 MGP_CASTEiJ_G0017307.1 mouse_genomes_project 11 1788804 1795117 + Nipsnap1 protein_coding processed_transcript MGP_CASTEiJ_T0027190.1 MGP_CASTEiJ_G0017307.1 mouse_genomes_project 11 1788862 1789675 + Nipsnap1 protein_coding processed_transcript MGP_CASTEiJ_T0030337.1 MGP_CASTEiJ_G0018056.1 mouse_genomes_project 11 78163777 78168764 - MGP_CASTEiJ_P0030337 Trp53i13 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030338.1 MGP_CASTEiJ_G0018056.1 mouse_genomes_project 11 78163779 78168839 - MGP_CASTEiJ_P0030338 Trp53i13 protein_coding protein_coding MGP_CASTEiJ_T0030339.1 MGP_CASTEiJ_G0018056.1 mouse_genomes_project 11 78164291 78168232 - Trp53i13 protein_coding processed_transcript MGP_CASTEiJ_T0030340.1 MGP_CASTEiJ_G0018056.1 mouse_genomes_project 11 78164650 78168504 - Trp53i13 protein_coding processed_transcript MGP_CASTEiJ_T0030341.1 MGP_CASTEiJ_G0018056.1 mouse_genomes_project 11 78164781 78172541 - MGP_CASTEiJ_P0030341 Trp53i13 protein_coding protein_coding MGP_CASTEiJ_T0030342.1 MGP_CASTEiJ_G0018056.1 mouse_genomes_project 11 78168212 78172790 - Trp53i13 protein_coding processed_transcript MGP_CASTEiJ_T0029720.1 MGP_CASTEiJ_G0017908.1 mouse_genomes_project 11 70690132 70691671 + MGP_CASTEiJ_P0029720 Gltpd2 protein_coding protein_coding MGP_CASTEiJ_T0029721.1 MGP_CASTEiJ_G0017908.1 mouse_genomes_project 11 70690573 70691454 + MGP_CASTEiJ_P0029721 Gltpd2 protein_coding protein_coding MGP_CASTEiJ_T0012134.1 MGP_CASTEiJ_G0010297.1 mouse_genomes_project 11 7440467 7441382 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006085.1 MGP_CASTEiJ_G0005096.1 mouse_genomes_project 11 60468460 60476502 + Gm26534 lincRNA lincRNA MGP_CASTEiJ_T0003040.1 MGP_CASTEiJ_G0002833.1 mouse_genomes_project 11 42013245 42015185 - Gm12150 antisense antisense MGP_CASTEiJ_T0031524.1 MGP_CASTEiJ_G0018337.1 mouse_genomes_project 11 99585830 99607071 - MGP_CASTEiJ_P0031524 Gpr179 protein_coding protein_coding MGP_CASTEiJ_T0031525.1 MGP_CASTEiJ_G0018337.1 mouse_genomes_project 11 99604420 99607146 - Gpr179 protein_coding retained_intron MGP_CASTEiJ_T0029954.1 MGP_CASTEiJ_G0017953.1 mouse_genomes_project 11 73167904 73186506 - MGP_CASTEiJ_P0029954 Cyb5d2 protein_coding protein_coding MGP_CASTEiJ_T0029955.1 MGP_CASTEiJ_G0017953.1 mouse_genomes_project 11 73168801 73186468 - MGP_CASTEiJ_P0029955 Cyb5d2 protein_coding protein_coding MGP_CASTEiJ_T0029956.1 MGP_CASTEiJ_G0017953.1 mouse_genomes_project 11 73168801 73186768 - MGP_CASTEiJ_P0029956 Cyb5d2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029957.1 MGP_CASTEiJ_G0017953.1 mouse_genomes_project 11 73169550 73186744 - Cyb5d2 protein_coding processed_transcript MGP_CASTEiJ_T0029958.1 MGP_CASTEiJ_G0017953.1 mouse_genomes_project 11 73183539 73186491 - Cyb5d2 protein_coding retained_intron MGP_CASTEiJ_T0032568.1 MGP_CASTEiJ_G0018591.1 mouse_genomes_project 11 109019774 109028856 - MGP_CASTEiJ_P0032568 Cyb561 protein_coding protein_coding MGP_CASTEiJ_T0032569.1 MGP_CASTEiJ_G0018591.1 mouse_genomes_project 11 109019942 109028909 - MGP_CASTEiJ_P0032569 Cyb561 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032570.1 MGP_CASTEiJ_G0018591.1 mouse_genomes_project 11 109020010 109028867 - MGP_CASTEiJ_P0032570 Cyb561 protein_coding protein_coding MGP_CASTEiJ_T0032571.1 MGP_CASTEiJ_G0018591.1 mouse_genomes_project 11 109020179 109020887 - Cyb561 protein_coding processed_transcript MGP_CASTEiJ_T0032572.1 MGP_CASTEiJ_G0018591.1 mouse_genomes_project 11 109020489 109039151 - MGP_CASTEiJ_P0032572 Cyb561 protein_coding protein_coding MGP_CASTEiJ_T0032573.1 MGP_CASTEiJ_G0018591.1 mouse_genomes_project 11 109020919 109029146 - MGP_CASTEiJ_P0032573 Cyb561 protein_coding protein_coding MGP_CASTEiJ_T0032574.1 MGP_CASTEiJ_G0018591.1 mouse_genomes_project 11 109021264 109029204 - MGP_CASTEiJ_P0032574 Cyb561 protein_coding protein_coding MGP_CASTEiJ_T0033299.1 MGP_CASTEiJ_G0018739.1 mouse_genomes_project 11 120681086 120695929 + MGP_CASTEiJ_P0033299 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033300.1 MGP_CASTEiJ_G0018739.1 mouse_genomes_project 11 120681407 120696226 + MGP_CASTEiJ_P0033300 protein_coding protein_coding MGP_CASTEiJ_T0033301.1 MGP_CASTEiJ_G0018739.1 mouse_genomes_project 11 120681662 120696210 + MGP_CASTEiJ_P0033301 protein_coding protein_coding MGP_CASTEiJ_T0033302.1 MGP_CASTEiJ_G0018739.1 mouse_genomes_project 11 120684443 120696224 + MGP_CASTEiJ_P0033302 protein_coding protein_coding MGP_CASTEiJ_T0033303.1 MGP_CASTEiJ_G0018739.1 mouse_genomes_project 11 120684491 120687458 + protein_coding retained_intron MGP_CASTEiJ_T0030411.1 MGP_CASTEiJ_G0018068.1 mouse_genomes_project 11 78766210 78792609 + MGP_CASTEiJ_P0030411 Flot2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030412.1 MGP_CASTEiJ_G0018068.1 mouse_genomes_project 11 78766210 78792609 + MGP_CASTEiJ_P0030412 Flot2 protein_coding protein_coding MGP_CASTEiJ_T0030413.1 MGP_CASTEiJ_G0018068.1 mouse_genomes_project 11 78766263 78792609 + MGP_CASTEiJ_P0030413 Flot2 protein_coding protein_coding MGP_CASTEiJ_T0030414.1 MGP_CASTEiJ_G0018068.1 mouse_genomes_project 11 78766343 78792614 + MGP_CASTEiJ_P0030414 Flot2 protein_coding protein_coding MGP_CASTEiJ_T0030415.1 MGP_CASTEiJ_G0018068.1 mouse_genomes_project 11 78768627 78792609 + Flot2 protein_coding processed_transcript MGP_CASTEiJ_T0009436.1 MGP_CASTEiJ_G0007624.1 mouse_genomes_project 11 58401692 58401830 - Gm44313 miRNA miRNA MGP_CASTEiJ_T0028692.1 MGP_CASTEiJ_G0017674.1 mouse_genomes_project 11 57896586 57912040 - MGP_CASTEiJ_P0028692 Olfr329-ps protein_coding protein_coding MGP_CASTEiJ_T0003091.1 MGP_CASTEiJ_G0002878.1 mouse_genomes_project 11 62669044 62671500 - Tvp23bos antisense antisense MGP_CASTEiJ_T0012235.1 MGP_CASTEiJ_G0010398.1 mouse_genomes_project 11 47262419 47263080 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030550.1 MGP_CASTEiJ_G0018102.1 mouse_genomes_project 11 79832387 79979891 - MGP_CASTEiJ_P0030550 Ksr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030551.1 MGP_CASTEiJ_G0018102.1 mouse_genomes_project 11 79832387 79860579 - MGP_CASTEiJ_P0030551 Ksr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030552.1 MGP_CASTEiJ_G0018102.1 mouse_genomes_project 11 79832396 79980049 - MGP_CASTEiJ_P0030552 Ksr1 protein_coding protein_coding MGP_CASTEiJ_T0030553.1 MGP_CASTEiJ_G0018102.1 mouse_genomes_project 11 79847010 79980049 - MGP_CASTEiJ_P0030553 Ksr1 protein_coding protein_coding MGP_CASTEiJ_T0030554.1 MGP_CASTEiJ_G0018102.1 mouse_genomes_project 11 79868150 79886807 - MGP_CASTEiJ_P0030554 Ksr1 protein_coding protein_coding MGP_CASTEiJ_T0030555.1 MGP_CASTEiJ_G0018102.1 mouse_genomes_project 11 79868413 79884548 - MGP_CASTEiJ_P0030555 Ksr1 protein_coding protein_coding MGP_CASTEiJ_T0027982.1 MGP_CASTEiJ_G0017484.1 mouse_genomes_project 11 40463757 40522655 - MGP_CASTEiJ_P0027982 Gabra1 protein_coding protein_coding MGP_CASTEiJ_T0027983.1 MGP_CASTEiJ_G0017484.1 mouse_genomes_project 11 40463757 40523424 - MGP_CASTEiJ_P0027983 Gabra1 protein_coding protein_coding MGP_CASTEiJ_T0027984.1 MGP_CASTEiJ_G0017484.1 mouse_genomes_project 11 40468393 40517780 - MGP_CASTEiJ_P0027984 Gabra1 protein_coding protein_coding MGP_CASTEiJ_T0027985.1 MGP_CASTEiJ_G0017484.1 mouse_genomes_project 11 40489969 40517893 - MGP_CASTEiJ_P0027985 Gabra1 protein_coding protein_coding MGP_CASTEiJ_T0027986.1 MGP_CASTEiJ_G0017484.1 mouse_genomes_project 11 40512731 40523424 - MGP_CASTEiJ_P0027986 Gabra1 protein_coding protein_coding MGP_CASTEiJ_T0027987.1 MGP_CASTEiJ_G0017484.1 mouse_genomes_project 11 40514038 40522952 - Gabra1 protein_coding processed_transcript MGP_CASTEiJ_T0027988.1 MGP_CASTEiJ_G0017484.1 mouse_genomes_project 11 40517496 40523403 - MGP_CASTEiJ_P0027988 Gabra1 protein_coding protein_coding MGP_CASTEiJ_T0030680.1 MGP_CASTEiJ_G0018136.1 mouse_genomes_project 11 83444955 83507663 + MGP_CASTEiJ_P0030680 Tmem132e protein_coding protein_coding MGP_CASTEiJ_T0030681.1 MGP_CASTEiJ_G0018136.1 mouse_genomes_project 11 83444955 83507668 + MGP_CASTEiJ_P0030681 Tmem132e protein_coding protein_coding MGP_CASTEiJ_T0030682.1 MGP_CASTEiJ_G0018136.1 mouse_genomes_project 11 83445081 83506774 + MGP_CASTEiJ_P0030682 Tmem132e protein_coding unknown_likely_coding MGP_CASTEiJ_T0030683.1 MGP_CASTEiJ_G0018136.1 mouse_genomes_project 11 83445178 83496053 + Tmem132e protein_coding processed_transcript MGP_CASTEiJ_T0030684.1 MGP_CASTEiJ_G0018136.1 mouse_genomes_project 11 83499603 83504250 + Tmem132e protein_coding retained_intron MGP_CASTEiJ_T0029104.1 MGP_CASTEiJ_G0017767.1 mouse_genomes_project 11 62321625 62369561 - MGP_CASTEiJ_P0029104 Lrrc75a protein_coding unknown_likely_coding MGP_CASTEiJ_T0029105.1 MGP_CASTEiJ_G0017767.1 mouse_genomes_project 11 62321874 62369798 - MGP_CASTEiJ_P0029105 Lrrc75a protein_coding protein_coding MGP_CASTEiJ_T0029106.1 MGP_CASTEiJ_G0017767.1 mouse_genomes_project 11 62322812 62369315 - Lrrc75a protein_coding processed_transcript MGP_CASTEiJ_T0029107.1 MGP_CASTEiJ_G0017767.1 mouse_genomes_project 11 62323016 62369324 - Lrrc75a protein_coding processed_transcript MGP_CASTEiJ_T0012293.1 MGP_CASTEiJ_G0010456.1 mouse_genomes_project 11 69124568 69124739 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012282.1 MGP_CASTEiJ_G0010445.1 mouse_genomes_project 11 61995348 61995654 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028798.1 MGP_CASTEiJ_G0017714.1 mouse_genomes_project 11 59165884 59233412 + protein_coding processed_transcript MGP_CASTEiJ_T0028799.1 MGP_CASTEiJ_G0017714.1 mouse_genomes_project 11 59167074 59287924 + MGP_CASTEiJ_P0028799 protein_coding protein_coding MGP_CASTEiJ_T0028800.1 MGP_CASTEiJ_G0017714.1 mouse_genomes_project 11 59167086 59283203 + MGP_CASTEiJ_P0028800 protein_coding protein_coding MGP_CASTEiJ_T0028801.1 MGP_CASTEiJ_G0017714.1 mouse_genomes_project 11 59167086 59283203 + MGP_CASTEiJ_P0028801 protein_coding protein_coding MGP_CASTEiJ_T0028802.1 MGP_CASTEiJ_G0017714.1 mouse_genomes_project 11 59167086 59287918 + MGP_CASTEiJ_P0028802 protein_coding protein_coding MGP_CASTEiJ_T0028803.1 MGP_CASTEiJ_G0017714.1 mouse_genomes_project 11 59233407 59283582 + MGP_CASTEiJ_P0028803 protein_coding protein_coding MGP_CASTEiJ_T0028804.1 MGP_CASTEiJ_G0017714.1 mouse_genomes_project 11 59237276 59283203 + MGP_CASTEiJ_P0028804 protein_coding protein_coding MGP_CASTEiJ_T0028805.1 MGP_CASTEiJ_G0017714.1 mouse_genomes_project 11 59247845 59256658 + protein_coding processed_transcript MGP_CASTEiJ_T0028806.1 MGP_CASTEiJ_G0017714.1 mouse_genomes_project 11 59267868 59283203 + MGP_CASTEiJ_P0028806 protein_coding protein_coding MGP_CASTEiJ_T0101519.1 MGP_CASTEiJ_G0038414.1 mouse_genomes_project 11 121521278 121522354 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0099241.1 MGP_CASTEiJ_G0036154.1 mouse_genomes_project 11 69039190 69039304 + Gm25819 snRNA snRNA MGP_CASTEiJ_T0031821.1 MGP_CASTEiJ_G0018434.1 mouse_genomes_project 11 102517043 102517964 + MGP_CASTEiJ_P0031821 Gm11565 protein_coding protein_coding MGP_CASTEiJ_T0031823.1 MGP_CASTEiJ_G0018436.1 mouse_genomes_project 11 102587462 102588491 - MGP_CASTEiJ_P0031823 Krtap29-1 protein_coding protein_coding MGP_CASTEiJ_T0030399.1 MGP_CASTEiJ_G0018066.1 mouse_genomes_project 11 78708508 78754551 + MGP_CASTEiJ_P0030399 Phf12 protein_coding protein_coding MGP_CASTEiJ_T0030400.1 MGP_CASTEiJ_G0018066.1 mouse_genomes_project 11 78708556 78758881 + MGP_CASTEiJ_P0030400 Phf12 protein_coding protein_coding MGP_CASTEiJ_T0030401.1 MGP_CASTEiJ_G0018066.1 mouse_genomes_project 11 78751923 78754529 + MGP_CASTEiJ_P0030401 Phf12 protein_coding protein_coding MGP_CASTEiJ_T0030402.1 MGP_CASTEiJ_G0018066.1 mouse_genomes_project 11 78752137 78754298 + Phf12 protein_coding retained_intron MGP_CASTEiJ_T0030403.1 MGP_CASTEiJ_G0018066.1 mouse_genomes_project 11 78752171 78754519 + MGP_CASTEiJ_P0030403 Phf12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030404.1 MGP_CASTEiJ_G0018066.1 mouse_genomes_project 11 78752238 78757189 + MGP_CASTEiJ_P0030404 Phf12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030405.1 MGP_CASTEiJ_G0018066.1 mouse_genomes_project 11 78752261 78754353 + MGP_CASTEiJ_P0030405 Phf12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030406.1 MGP_CASTEiJ_G0018066.1 mouse_genomes_project 11 78756451 78757919 + Phf12 protein_coding retained_intron MGP_CASTEiJ_T0033233.1 MGP_CASTEiJ_G0018727.1 mouse_genomes_project 11 120274452 120295951 - Exoc7 protein_coding processed_transcript MGP_CASTEiJ_T0033234.1 MGP_CASTEiJ_G0018727.1 mouse_genomes_project 11 120274452 120295951 - MGP_CASTEiJ_P0033234 Exoc7 protein_coding protein_coding MGP_CASTEiJ_T0033235.1 MGP_CASTEiJ_G0018727.1 mouse_genomes_project 11 120274452 120295951 - MGP_CASTEiJ_P0033235 Exoc7 protein_coding protein_coding MGP_CASTEiJ_T0033236.1 MGP_CASTEiJ_G0018727.1 mouse_genomes_project 11 120274452 120295951 - MGP_CASTEiJ_P0033236 Exoc7 protein_coding protein_coding MGP_CASTEiJ_T0033237.1 MGP_CASTEiJ_G0018727.1 mouse_genomes_project 11 120275514 120276951 - Exoc7 protein_coding processed_transcript MGP_CASTEiJ_T0033238.1 MGP_CASTEiJ_G0018727.1 mouse_genomes_project 11 120275560 120279514 - Exoc7 protein_coding processed_transcript MGP_CASTEiJ_T0033239.1 MGP_CASTEiJ_G0018727.1 mouse_genomes_project 11 120280615 120286629 - Exoc7 protein_coding processed_transcript MGP_CASTEiJ_T0033240.1 MGP_CASTEiJ_G0018727.1 mouse_genomes_project 11 120284537 120295869 - MGP_CASTEiJ_P0033240 Exoc7 protein_coding protein_coding MGP_CASTEiJ_T0033241.1 MGP_CASTEiJ_G0018727.1 mouse_genomes_project 11 120293825 120295944 - MGP_CASTEiJ_P0033241 Exoc7 protein_coding protein_coding MGP_CASTEiJ_T0033242.1 MGP_CASTEiJ_G0018727.1 mouse_genomes_project 11 120294244 120296449 - MGP_CASTEiJ_P0033242 Exoc7 protein_coding protein_coding MGP_CASTEiJ_T0030093.1 MGP_CASTEiJ_G0018007.1 mouse_genomes_project 11 75351687 75400463 - MGP_CASTEiJ_P0030093 Sgsm2 protein_coding protein_coding MGP_CASTEiJ_T0030094.1 MGP_CASTEiJ_G0018007.1 mouse_genomes_project 11 75351692 75400463 - MGP_CASTEiJ_P0030094 Sgsm2 protein_coding protein_coding MGP_CASTEiJ_T0030095.1 MGP_CASTEiJ_G0018007.1 mouse_genomes_project 11 75361496 75365504 - Sgsm2 protein_coding retained_intron MGP_CASTEiJ_T0030096.1 MGP_CASTEiJ_G0018007.1 mouse_genomes_project 11 75372352 75374016 - Sgsm2 protein_coding retained_intron MGP_CASTEiJ_T0030097.1 MGP_CASTEiJ_G0018007.1 mouse_genomes_project 11 75372362 75373312 - Sgsm2 protein_coding retained_intron MGP_CASTEiJ_T0030055.1 MGP_CASTEiJ_G0017999.1 mouse_genomes_project 11 74812352 74813401 - MGP_CASTEiJ_P0030055 Olfr411 protein_coding protein_coding MGP_CASTEiJ_T0030056.1 MGP_CASTEiJ_G0017999.1 mouse_genomes_project 11 74812620 74818350 - MGP_CASTEiJ_P0030056 Olfr411 protein_coding protein_coding MGP_CASTEiJ_T0003243.1 MGP_CASTEiJ_G0002998.1 mouse_genomes_project 11 122005916 122023254 + Gm11725 antisense antisense MGP_CASTEiJ_T0033706.1 MGP_CASTEiJ_G0018815.1 mouse_genomes_project 11 124929510 124938907 - MGP_CASTEiJ_P0033706 Alyref protein_coding unknown_likely_coding MGP_CASTEiJ_T0033707.1 MGP_CASTEiJ_G0018815.1 mouse_genomes_project 11 124932677 124938913 - MGP_CASTEiJ_P0033707 Alyref protein_coding protein_coding MGP_CASTEiJ_T0033708.1 MGP_CASTEiJ_G0018815.1 mouse_genomes_project 11 124935065 124936209 - Alyref protein_coding processed_transcript MGP_CASTEiJ_T0033709.1 MGP_CASTEiJ_G0018815.1 mouse_genomes_project 11 124936167 124938779 - Alyref protein_coding retained_intron MGP_CASTEiJ_T0012429.1 MGP_CASTEiJ_G0010592.1 mouse_genomes_project 11 125468751 125468919 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028428.1 MGP_CASTEiJ_G0017603.1 mouse_genomes_project 11 52311893 52359291 - MGP_CASTEiJ_P0028428 Hspa4 protein_coding protein_coding MGP_CASTEiJ_T0028429.1 MGP_CASTEiJ_G0017603.1 mouse_genomes_project 11 52313631 52359105 - MGP_CASTEiJ_P0028429 Hspa4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028430.1 MGP_CASTEiJ_G0017603.1 mouse_genomes_project 11 52316374 52321938 - Hspa4 protein_coding retained_intron MGP_CASTEiJ_T0028431.1 MGP_CASTEiJ_G0017603.1 mouse_genomes_project 11 52317642 52359245 - Hspa4 protein_coding processed_transcript MGP_CASTEiJ_T0012396.1 MGP_CASTEiJ_G0010559.1 mouse_genomes_project 11 108222635 108224466 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012328.1 MGP_CASTEiJ_G0010491.1 mouse_genomes_project 11 80218071 80219033 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028062.1 MGP_CASTEiJ_G0017504.1 mouse_genomes_project 11 44506135 44514815 - MGP_CASTEiJ_P0028062 Thg1l protein_coding protein_coding MGP_CASTEiJ_T0028063.1 MGP_CASTEiJ_G0017504.1 mouse_genomes_project 11 44506135 44514508 - MGP_CASTEiJ_P0028063 Thg1l protein_coding protein_coding MGP_CASTEiJ_T0028064.1 MGP_CASTEiJ_G0017504.1 mouse_genomes_project 11 44509543 44513750 - Thg1l protein_coding processed_transcript MGP_CASTEiJ_T0028065.1 MGP_CASTEiJ_G0017504.1 mouse_genomes_project 11 44510524 44514477 - Thg1l protein_coding processed_transcript MGP_CASTEiJ_T0028066.1 MGP_CASTEiJ_G0017504.1 mouse_genomes_project 11 44513600 44514804 - Thg1l protein_coding processed_transcript MGP_CASTEiJ_T0100446.1 MGP_CASTEiJ_G0037359.1 mouse_genomes_project 11 62514322 62514465 + Gm24151 snoRNA snoRNA MGP_CASTEiJ_T0029984.1 MGP_CASTEiJ_G0017961.1 mouse_genomes_project 11 73573376 73585633 + MGP_CASTEiJ_P0029984 P2rx5 protein_coding protein_coding MGP_CASTEiJ_T0029985.1 MGP_CASTEiJ_G0017961.1 mouse_genomes_project 11 73573540 73583446 + MGP_CASTEiJ_P0029985 P2rx5 protein_coding protein_coding MGP_CASTEiJ_T0029986.1 MGP_CASTEiJ_G0017961.1 mouse_genomes_project 11 73573540 73583446 + MGP_CASTEiJ_P0029986 P2rx5 protein_coding protein_coding MGP_CASTEiJ_T0009526.1 MGP_CASTEiJ_G0007714.1 mouse_genomes_project 11 124349969 124350081 - Gm25948 miRNA miRNA MGP_CASTEiJ_T0100485.1 MGP_CASTEiJ_G0037398.1 mouse_genomes_project 11 125410565 125410690 + Gm22152 snoRNA snoRNA MGP_CASTEiJ_T0028329.1 MGP_CASTEiJ_G0017580.1 mouse_genomes_project 11 50129923 50140946 - MGP_CASTEiJ_P0028329 BC049762 protein_coding protein_coding MGP_CASTEiJ_T0028330.1 MGP_CASTEiJ_G0017580.1 mouse_genomes_project 11 50129923 50140851 - MGP_CASTEiJ_P0028330 BC049762 protein_coding protein_coding MGP_CASTEiJ_T0009464.1 MGP_CASTEiJ_G0007652.1 mouse_genomes_project 11 75702255 75702346 + Mir212 miRNA miRNA MGP_CASTEiJ_T0012287.1 MGP_CASTEiJ_G0010450.1 mouse_genomes_project 11 63609081 63610364 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027441.1 MGP_CASTEiJ_G0017362.1 mouse_genomes_project 11 9041582 9066788 - protein_coding processed_transcript MGP_CASTEiJ_T0027442.1 MGP_CASTEiJ_G0017362.1 mouse_genomes_project 11 9041594 9059313 - protein_coding processed_transcript MGP_CASTEiJ_T0027443.1 MGP_CASTEiJ_G0017362.1 mouse_genomes_project 11 9058565 9066798 - MGP_CASTEiJ_P0027443 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027444.1 MGP_CASTEiJ_G0017362.1 mouse_genomes_project 11 9060548 9066811 - MGP_CASTEiJ_P0027444 protein_coding protein_coding MGP_CASTEiJ_T0003145.1 MGP_CASTEiJ_G0002920.1 mouse_genomes_project 11 89291136 89300577 - antisense antisense MGP_CASTEiJ_T0032939.1 MGP_CASTEiJ_G0018671.1 mouse_genomes_project 11 118833255 118980589 - MGP_CASTEiJ_P0032939 protein_coding protein_coding MGP_CASTEiJ_T0012285.1 MGP_CASTEiJ_G0010448.1 mouse_genomes_project 11 62483661 62484864 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099260.1 MGP_CASTEiJ_G0036173.1 mouse_genomes_project 11 87841891 87841997 - Gm26439 snRNA snRNA MGP_CASTEiJ_T0027364.1 MGP_CASTEiJ_G0017343.1 mouse_genomes_project 11 3625807 3633669 - MGP_CASTEiJ_P0027364 Nacad protein_coding unknown_likely_coding MGP_CASTEiJ_T0027365.1 MGP_CASTEiJ_G0017343.1 mouse_genomes_project 11 3625812 3634075 - MGP_CASTEiJ_P0027365 Nacad protein_coding protein_coding MGP_CASTEiJ_T0027366.1 MGP_CASTEiJ_G0017343.1 mouse_genomes_project 11 3625881 3627409 - MGP_CASTEiJ_P0027366 Nacad protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027367.1 MGP_CASTEiJ_G0017343.1 mouse_genomes_project 11 3625892 3627961 - MGP_CASTEiJ_P0027367 Nacad protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032771.1 MGP_CASTEiJ_G0018634.1 mouse_genomes_project 11 112455442 112460311 - MGP_CASTEiJ_P0032771 protein_coding protein_coding MGP_CASTEiJ_T0029926.1 MGP_CASTEiJ_G0017948.1 mouse_genomes_project 11 72805891 72818500 + MGP_CASTEiJ_P0029926 Mybbp1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0029927.1 MGP_CASTEiJ_G0017948.1 mouse_genomes_project 11 72808280 72818500 + MGP_CASTEiJ_P0029927 Mybbp1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0029928.1 MGP_CASTEiJ_G0017948.1 mouse_genomes_project 11 72808297 72818711 + Mybbp1a protein_coding retained_intron MGP_CASTEiJ_T0029929.1 MGP_CASTEiJ_G0017948.1 mouse_genomes_project 11 72808299 72818172 + Mybbp1a protein_coding retained_intron MGP_CASTEiJ_T0029930.1 MGP_CASTEiJ_G0017948.1 mouse_genomes_project 11 72808319 72810516 + Mybbp1a protein_coding retained_intron MGP_CASTEiJ_T0029931.1 MGP_CASTEiJ_G0017948.1 mouse_genomes_project 11 72810714 72811506 + Mybbp1a protein_coding retained_intron MGP_CASTEiJ_T0029932.1 MGP_CASTEiJ_G0017948.1 mouse_genomes_project 11 72815159 72817948 + Mybbp1a protein_coding retained_intron MGP_CASTEiJ_T0029933.1 MGP_CASTEiJ_G0017948.1 mouse_genomes_project 11 72816580 72817649 + Mybbp1a protein_coding retained_intron MGP_CASTEiJ_T0029934.1 MGP_CASTEiJ_G0017948.1 mouse_genomes_project 11 72817516 72818045 + Mybbp1a protein_coding retained_intron MGP_CASTEiJ_T0100432.1 MGP_CASTEiJ_G0037345.1 mouse_genomes_project 11 44199391 44199523 + Gm22284 snoRNA snoRNA MGP_CASTEiJ_T0003202.1 MGP_CASTEiJ_G0002966.1 mouse_genomes_project 11 107585282 107586270 - Gm11665 antisense antisense MGP_CASTEiJ_T0029492.1 MGP_CASTEiJ_G0017858.1 mouse_genomes_project 11 69786028 69797345 - MGP_CASTEiJ_P0029492 Tnfsf12 protein_coding protein_coding MGP_CASTEiJ_T0029493.1 MGP_CASTEiJ_G0017858.1 mouse_genomes_project 11 69788282 69797017 - MGP_CASTEiJ_P0029493 Tnfsf12 protein_coding protein_coding MGP_CASTEiJ_T0033779.1 MGP_CASTEiJ_G0018825.1 mouse_genomes_project 11 125067724 125068766 - protein_coding processed_transcript MGP_CASTEiJ_T0033780.1 MGP_CASTEiJ_G0018825.1 mouse_genomes_project 11 125067724 125070506 - MGP_CASTEiJ_P0033780 protein_coding protein_coding MGP_CASTEiJ_T0033781.1 MGP_CASTEiJ_G0018825.1 mouse_genomes_project 11 125067724 125070506 - MGP_CASTEiJ_P0033781 protein_coding protein_coding MGP_CASTEiJ_T0033782.1 MGP_CASTEiJ_G0018825.1 mouse_genomes_project 11 125067724 125070512 - MGP_CASTEiJ_P0033782 protein_coding protein_coding MGP_CASTEiJ_T0033783.1 MGP_CASTEiJ_G0018825.1 mouse_genomes_project 11 125067725 125070512 - MGP_CASTEiJ_P0033783 protein_coding protein_coding MGP_CASTEiJ_T0012245.1 MGP_CASTEiJ_G0010408.1 mouse_genomes_project 11 51404600 51404763 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016504.1 MGP_CASTEiJ_G0014508.1 mouse_genomes_project 11 96608292 96620910 + Gm11542 processed_transcript processed_transcript MGP_CASTEiJ_T0027684.1 MGP_CASTEiJ_G0017412.1 mouse_genomes_project 11 23254604 23299351 - 5730522E02Rik protein_coding processed_transcript MGP_CASTEiJ_T0027685.1 MGP_CASTEiJ_G0017412.1 mouse_genomes_project 11 23254657 23269029 - 5730522E02Rik protein_coding processed_transcript MGP_CASTEiJ_T0027686.1 MGP_CASTEiJ_G0017412.1 mouse_genomes_project 11 23266611 23883670 - 5730522E02Rik protein_coding processed_transcript MGP_CASTEiJ_T0027687.1 MGP_CASTEiJ_G0017412.1 mouse_genomes_project 11 23268017 23883673 - MGP_CASTEiJ_P0027687 5730522E02Rik protein_coding protein_coding MGP_CASTEiJ_T0027688.1 MGP_CASTEiJ_G0017412.1 mouse_genomes_project 11 23285211 23303262 - 5730522E02Rik protein_coding processed_transcript MGP_CASTEiJ_T0027689.1 MGP_CASTEiJ_G0017412.1 mouse_genomes_project 11 23299118 23423988 - MGP_CASTEiJ_P0027689 5730522E02Rik protein_coding protein_coding MGP_CASTEiJ_T0027690.1 MGP_CASTEiJ_G0017412.1 mouse_genomes_project 11 23503378 23752448 - 5730522E02Rik protein_coding processed_transcript MGP_CASTEiJ_T0027691.1 MGP_CASTEiJ_G0017412.1 mouse_genomes_project 11 23775161 23883864 - 5730522E02Rik protein_coding processed_transcript MGP_CASTEiJ_T0012290.1 MGP_CASTEiJ_G0010453.1 mouse_genomes_project 11 66474286 66475262 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012312.1 MGP_CASTEiJ_G0010475.1 mouse_genomes_project 11 74302224 74304044 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030605.1 MGP_CASTEiJ_G0018114.1 mouse_genomes_project 11 80985211 81034809 + MGP_CASTEiJ_P0030605 Atad5 protein_coding protein_coding MGP_CASTEiJ_T0030606.1 MGP_CASTEiJ_G0018114.1 mouse_genomes_project 11 80985582 81034795 + MGP_CASTEiJ_P0030606 Atad5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030607.1 MGP_CASTEiJ_G0018114.1 mouse_genomes_project 11 80997298 81034809 + Atad5 protein_coding processed_transcript MGP_CASTEiJ_T0030608.1 MGP_CASTEiJ_G0018114.1 mouse_genomes_project 11 80998467 81003941 + Atad5 protein_coding retained_intron MGP_CASTEiJ_T0012385.1 MGP_CASTEiJ_G0010548.1 mouse_genomes_project 11 105341516 105341687 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032760.1 MGP_CASTEiJ_G0018632.1 mouse_genomes_project 11 111968824 111969783 - MGP_CASTEiJ_P0032760 Olfr635 protein_coding protein_coding MGP_CASTEiJ_T0012398.1 MGP_CASTEiJ_G0010561.1 mouse_genomes_project 11 108959744 108960756 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029463.1 MGP_CASTEiJ_G0017853.1 mouse_genomes_project 11 69760984 69762925 - MGP_CASTEiJ_P0029463 Cd68 protein_coding protein_coding MGP_CASTEiJ_T0029464.1 MGP_CASTEiJ_G0017853.1 mouse_genomes_project 11 69761077 69762834 - Cd68 protein_coding processed_transcript MGP_CASTEiJ_T0029465.1 MGP_CASTEiJ_G0017853.1 mouse_genomes_project 11 69761142 69762834 - MGP_CASTEiJ_P0029465 Cd68 protein_coding protein_coding MGP_CASTEiJ_T0012428.1 MGP_CASTEiJ_G0010591.1 mouse_genomes_project 11 125379644 125379937 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012180.1 MGP_CASTEiJ_G0010343.1 mouse_genomes_project 11 20322399 20323832 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012348.1 MGP_CASTEiJ_G0010511.1 mouse_genomes_project 11 88763096 88763368 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016473.1 MGP_CASTEiJ_G0014493.1 mouse_genomes_project 11 67884879 67915939 + 9130017K11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016474.1 MGP_CASTEiJ_G0014493.1 mouse_genomes_project 11 67885751 67887144 + 9130017K11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0003259.1 MGP_CASTEiJ_G0003010.1 mouse_genomes_project 11 125193835 125197048 + Gm11773 antisense antisense MGP_CASTEiJ_T0030007.1 MGP_CASTEiJ_G0017967.1 mouse_genomes_project 11 73690709 73725266 + MGP_CASTEiJ_P0030007 Trpv3 protein_coding protein_coding MGP_CASTEiJ_T0030036.1 MGP_CASTEiJ_G0017986.1 mouse_genomes_project 11 74366023 74366962 - MGP_CASTEiJ_P0030036 Olfr395 protein_coding protein_coding MGP_CASTEiJ_T0030165.1 MGP_CASTEiJ_G0018023.1 mouse_genomes_project 11 76064382 76079471 + MGP_CASTEiJ_P0030165 Scarf1 protein_coding protein_coding MGP_CASTEiJ_T0030166.1 MGP_CASTEiJ_G0018023.1 mouse_genomes_project 11 76064383 76079471 + MGP_CASTEiJ_P0030166 Scarf1 protein_coding protein_coding MGP_CASTEiJ_T0030167.1 MGP_CASTEiJ_G0018023.1 mouse_genomes_project 11 76064417 76079467 + MGP_CASTEiJ_P0030167 Scarf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0016534.1 MGP_CASTEiJ_G0014531.1 mouse_genomes_project 11 116267302 116286580 - BC006965 processed_transcript processed_transcript MGP_CASTEiJ_T0016535.1 MGP_CASTEiJ_G0014531.1 mouse_genomes_project 11 116267413 116311070 - BC006965 processed_transcript processed_transcript MGP_CASTEiJ_T0016536.1 MGP_CASTEiJ_G0014531.1 mouse_genomes_project 11 116267520 116311063 - BC006965 processed_transcript processed_transcript MGP_CASTEiJ_T0016537.1 MGP_CASTEiJ_G0014531.1 mouse_genomes_project 11 116281926 116311048 - BC006965 processed_transcript processed_transcript MGP_CASTEiJ_T0016538.1 MGP_CASTEiJ_G0014531.1 mouse_genomes_project 11 116281926 116311048 - BC006965 processed_transcript processed_transcript MGP_CASTEiJ_T0016539.1 MGP_CASTEiJ_G0014531.1 mouse_genomes_project 11 116281928 116385852 - BC006965 processed_transcript processed_transcript MGP_CASTEiJ_T0016540.1 MGP_CASTEiJ_G0014531.1 mouse_genomes_project 11 116286383 116311046 - BC006965 processed_transcript processed_transcript MGP_CASTEiJ_T0016541.1 MGP_CASTEiJ_G0014531.1 mouse_genomes_project 11 116318505 116345208 - BC006965 processed_transcript processed_transcript MGP_CASTEiJ_T0012114.1 MGP_CASTEiJ_G0010277.1 mouse_genomes_project 11 729580 730393 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012249.1 MGP_CASTEiJ_G0010412.1 mouse_genomes_project 11 52735040 52735672 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031840.1 MGP_CASTEiJ_G0018448.1 mouse_genomes_project 11 102771022 102776099 - MGP_CASTEiJ_P0031840 Krt19 protein_coding protein_coding MGP_CASTEiJ_T0031841.1 MGP_CASTEiJ_G0018448.1 mouse_genomes_project 11 102771119 102773670 - Krt19 protein_coding processed_transcript MGP_CASTEiJ_T0031842.1 MGP_CASTEiJ_G0018448.1 mouse_genomes_project 11 102772332 102778653 - Krt19 protein_coding processed_transcript MGP_CASTEiJ_T0003140.1 MGP_CASTEiJ_G0002917.1 mouse_genomes_project 11 87130923 87139750 - Bcas3os2 antisense antisense MGP_CASTEiJ_T0027295.1 MGP_CASTEiJ_G0017329.1 mouse_genomes_project 11 2924836 2936921 + MGP_CASTEiJ_P0027295 Ykt6 protein_coding protein_coding MGP_CASTEiJ_T0027296.1 MGP_CASTEiJ_G0017329.1 mouse_genomes_project 11 2928473 2932350 + Ykt6 protein_coding processed_transcript MGP_CASTEiJ_T0028327.1 MGP_CASTEiJ_G0017578.1 mouse_genomes_project 11 49981155 49982132 - MGP_CASTEiJ_P0028327 Olfr1375 protein_coding protein_coding MGP_CASTEiJ_T0032338.1 MGP_CASTEiJ_G0018544.1 mouse_genomes_project 11 105432870 105435923 - MGP_CASTEiJ_P0032338 Gm11627 protein_coding protein_coding MGP_CASTEiJ_T0032339.1 MGP_CASTEiJ_G0018544.1 mouse_genomes_project 11 105432916 105435737 - Gm11627 protein_coding processed_transcript MGP_CASTEiJ_T0032340.1 MGP_CASTEiJ_G0018544.1 mouse_genomes_project 11 105432963 105435580 - MGP_CASTEiJ_P0032340 Gm11627 protein_coding protein_coding MGP_CASTEiJ_T0030739.1 MGP_CASTEiJ_G0018151.1 mouse_genomes_project 11 84380907 84383550 + MGP_CASTEiJ_P0030739 protein_coding protein_coding MGP_CASTEiJ_T0027818.1 MGP_CASTEiJ_G0017439.1 mouse_genomes_project 11 29583466 29590056 - MGP_CASTEiJ_P0027818 Bod1 protein_coding protein_coding MGP_CASTEiJ_T0027819.1 MGP_CASTEiJ_G0017439.1 mouse_genomes_project 11 29584755 29589898 - MGP_CASTEiJ_P0027819 Bod1 protein_coding protein_coding MGP_CASTEiJ_T0012273.1 MGP_CASTEiJ_G0010436.1 mouse_genomes_project 11 59883542 59884504 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003189.1 MGP_CASTEiJ_G0002953.1 mouse_genomes_project 11 104200139 104200964 - Gm11626 antisense antisense MGP_CASTEiJ_T0016550.1 MGP_CASTEiJ_G0014539.1 mouse_genomes_project 11 124526379 124528163 - 2900052L18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0012196.1 MGP_CASTEiJ_G0010359.1 mouse_genomes_project 11 27381103 27387664 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029918.1 MGP_CASTEiJ_G0017945.1 mouse_genomes_project 11 72704868 72724024 - MGP_CASTEiJ_P0029918 Tekt1 protein_coding protein_coding MGP_CASTEiJ_T0029919.1 MGP_CASTEiJ_G0017945.1 mouse_genomes_project 11 72704868 72723459 - MGP_CASTEiJ_P0029919 Tekt1 protein_coding protein_coding MGP_CASTEiJ_T0029920.1 MGP_CASTEiJ_G0017945.1 mouse_genomes_project 11 72704875 72724595 - MGP_CASTEiJ_P0029920 Tekt1 protein_coding protein_coding MGP_CASTEiJ_T0009438.1 MGP_CASTEiJ_G0007626.1 mouse_genomes_project 11 59731783 59731863 - Mir6921 miRNA miRNA MGP_CASTEiJ_T0012241.1 MGP_CASTEiJ_G0010404.1 mouse_genomes_project 11 48880087 48881081 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031550.1 MGP_CASTEiJ_G0018344.1 mouse_genomes_project 11 99976046 99978844 + MGP_CASTEiJ_P0031550 Cisd3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031551.1 MGP_CASTEiJ_G0018344.1 mouse_genomes_project 11 99976048 99978842 + MGP_CASTEiJ_P0031551 Cisd3 protein_coding protein_coding MGP_CASTEiJ_T0031552.1 MGP_CASTEiJ_G0018344.1 mouse_genomes_project 11 99976065 99978842 + MGP_CASTEiJ_P0031552 Cisd3 protein_coding protein_coding MGP_CASTEiJ_T0031553.1 MGP_CASTEiJ_G0018344.1 mouse_genomes_project 11 99976175 99978842 + MGP_CASTEiJ_P0031553 Cisd3 protein_coding protein_coding MGP_CASTEiJ_T0029477.1 MGP_CASTEiJ_G0017855.1 mouse_genomes_project 11 69769867 69781490 - MGP_CASTEiJ_P0029477 Senp3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029478.1 MGP_CASTEiJ_G0017855.1 mouse_genomes_project 11 69769873 69781627 - MGP_CASTEiJ_P0029478 Senp3 protein_coding protein_coding MGP_CASTEiJ_T0029479.1 MGP_CASTEiJ_G0017855.1 mouse_genomes_project 11 69769874 69771737 - Senp3 protein_coding retained_intron MGP_CASTEiJ_T0029480.1 MGP_CASTEiJ_G0017855.1 mouse_genomes_project 11 69769879 69781865 - MGP_CASTEiJ_P0029480 Senp3 protein_coding protein_coding MGP_CASTEiJ_T0029481.1 MGP_CASTEiJ_G0017855.1 mouse_genomes_project 11 69770033 69776008 - Senp3 protein_coding retained_intron MGP_CASTEiJ_T0029482.1 MGP_CASTEiJ_G0017855.1 mouse_genomes_project 11 69770099 69776576 - MGP_CASTEiJ_P0029482 Senp3 protein_coding protein_coding MGP_CASTEiJ_T0029483.1 MGP_CASTEiJ_G0017855.1 mouse_genomes_project 11 69770714 69771205 - Senp3 protein_coding retained_intron MGP_CASTEiJ_T0029484.1 MGP_CASTEiJ_G0017855.1 mouse_genomes_project 11 69770994 69773714 - Senp3 protein_coding processed_transcript MGP_CASTEiJ_T0029485.1 MGP_CASTEiJ_G0017855.1 mouse_genomes_project 11 69773814 69775902 - Senp3 protein_coding retained_intron MGP_CASTEiJ_T0029486.1 MGP_CASTEiJ_G0017855.1 mouse_genomes_project 11 69776045 69779004 - Senp3 protein_coding retained_intron MGP_CASTEiJ_T0027433.1 MGP_CASTEiJ_G0017361.1 mouse_genomes_project 11 8930269 8957282 + MGP_CASTEiJ_P0027433 Ikzf1 protein_coding protein_coding MGP_CASTEiJ_T0027434.1 MGP_CASTEiJ_G0017361.1 mouse_genomes_project 11 8930269 9007832 + MGP_CASTEiJ_P0027434 Ikzf1 protein_coding protein_coding MGP_CASTEiJ_T0027435.1 MGP_CASTEiJ_G0017361.1 mouse_genomes_project 11 8931191 9026417 + MGP_CASTEiJ_P0027435 Ikzf1 protein_coding protein_coding MGP_CASTEiJ_T0027436.1 MGP_CASTEiJ_G0017361.1 mouse_genomes_project 11 8931424 9026820 + MGP_CASTEiJ_P0027436 Ikzf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027437.1 MGP_CASTEiJ_G0017361.1 mouse_genomes_project 11 8931495 9015176 + MGP_CASTEiJ_P0027437 Ikzf1 protein_coding protein_coding MGP_CASTEiJ_T0027438.1 MGP_CASTEiJ_G0017361.1 mouse_genomes_project 11 8931658 9026820 + MGP_CASTEiJ_P0027438 Ikzf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027439.1 MGP_CASTEiJ_G0017361.1 mouse_genomes_project 11 8931658 9026820 + MGP_CASTEiJ_P0027439 Ikzf1 protein_coding protein_coding MGP_CASTEiJ_T0027440.1 MGP_CASTEiJ_G0017361.1 mouse_genomes_project 11 8931711 9024098 + MGP_CASTEiJ_P0027440 Ikzf1 protein_coding protein_coding MGP_CASTEiJ_T0029593.1 MGP_CASTEiJ_G0017882.1 mouse_genomes_project 11 70109733 70119560 + MGP_CASTEiJ_P0029593 Ctdnep1 protein_coding protein_coding MGP_CASTEiJ_T0029594.1 MGP_CASTEiJ_G0017882.1 mouse_genomes_project 11 70112503 70117580 + Ctdnep1 protein_coding retained_intron MGP_CASTEiJ_T0029595.1 MGP_CASTEiJ_G0017882.1 mouse_genomes_project 11 70117102 70118191 + Ctdnep1 protein_coding retained_intron MGP_CASTEiJ_T0029596.1 MGP_CASTEiJ_G0017882.1 mouse_genomes_project 11 70117122 70118436 + Ctdnep1 protein_coding processed_transcript MGP_CASTEiJ_T0012405.1 MGP_CASTEiJ_G0010568.1 mouse_genomes_project 11 112475330 112476328 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029005.1 MGP_CASTEiJ_G0017752.1 mouse_genomes_project 11 61140460 61204663 - MGP_CASTEiJ_P0029005 Epn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029006.1 MGP_CASTEiJ_G0017752.1 mouse_genomes_project 11 61142815 61204722 - MGP_CASTEiJ_P0029006 Epn2 protein_coding protein_coding MGP_CASTEiJ_T0029007.1 MGP_CASTEiJ_G0017752.1 mouse_genomes_project 11 61142815 61204722 - MGP_CASTEiJ_P0029007 Epn2 protein_coding protein_coding MGP_CASTEiJ_T0029008.1 MGP_CASTEiJ_G0017752.1 mouse_genomes_project 11 61142815 61204738 - MGP_CASTEiJ_P0029008 Epn2 protein_coding protein_coding MGP_CASTEiJ_T0029009.1 MGP_CASTEiJ_G0017752.1 mouse_genomes_project 11 61142815 61204738 - MGP_CASTEiJ_P0029009 Epn2 protein_coding protein_coding MGP_CASTEiJ_T0029010.1 MGP_CASTEiJ_G0017752.1 mouse_genomes_project 11 61142816 61204740 - MGP_CASTEiJ_P0029010 Epn2 protein_coding protein_coding MGP_CASTEiJ_T0029011.1 MGP_CASTEiJ_G0017752.1 mouse_genomes_project 11 61142816 61204740 - MGP_CASTEiJ_P0029011 Epn2 protein_coding protein_coding MGP_CASTEiJ_T0029012.1 MGP_CASTEiJ_G0017752.1 mouse_genomes_project 11 61148720 61172215 - MGP_CASTEiJ_P0029012 Epn2 protein_coding protein_coding MGP_CASTEiJ_T0029013.1 MGP_CASTEiJ_G0017752.1 mouse_genomes_project 11 61158216 61170154 - MGP_CASTEiJ_P0029013 Epn2 protein_coding protein_coding MGP_CASTEiJ_T0029014.1 MGP_CASTEiJ_G0017752.1 mouse_genomes_project 11 61159938 61172384 - Epn2 protein_coding retained_intron MGP_CASTEiJ_T0029015.1 MGP_CASTEiJ_G0017752.1 mouse_genomes_project 11 61172347 61204711 - MGP_CASTEiJ_P0029015 Epn2 protein_coding protein_coding MGP_CASTEiJ_T0029016.1 MGP_CASTEiJ_G0017752.1 mouse_genomes_project 11 61172533 61204711 - MGP_CASTEiJ_P0029016 Epn2 protein_coding protein_coding MGP_CASTEiJ_T0029017.1 MGP_CASTEiJ_G0017752.1 mouse_genomes_project 11 61172590 61204715 - Epn2 protein_coding processed_transcript MGP_CASTEiJ_T0029018.1 MGP_CASTEiJ_G0017752.1 mouse_genomes_project 11 61180550 61204723 - Epn2 protein_coding processed_transcript MGP_CASTEiJ_T0032630.1 MGP_CASTEiJ_G0018608.1 mouse_genomes_project 11 109411469 109415989 - MGP_CASTEiJ_P0032630 Cd79b protein_coding protein_coding MGP_CASTEiJ_T0032631.1 MGP_CASTEiJ_G0018608.1 mouse_genomes_project 11 109411472 109415756 - MGP_CASTEiJ_P0032631 Cd79b protein_coding protein_coding MGP_CASTEiJ_T0100409.1 MGP_CASTEiJ_G0037322.1 mouse_genomes_project 11 637592 637691 + Gm24013 snoRNA snoRNA MGP_CASTEiJ_T0100431.1 MGP_CASTEiJ_G0037344.1 mouse_genomes_project 11 33242924 33243061 + Gm26070 snoRNA snoRNA MGP_CASTEiJ_T0029373.1 MGP_CASTEiJ_G0017831.1 mouse_genomes_project 11 69207009 69222916 + MGP_CASTEiJ_P0029373 Alox12b protein_coding protein_coding MGP_CASTEiJ_T0098816.1 MGP_CASTEiJ_G0035746.1 mouse_genomes_project 11 68256225 68257552 - Gm12305 sense_intronic sense_intronic MGP_CASTEiJ_T0028956.1 MGP_CASTEiJ_G0017744.1 mouse_genomes_project 11 60824820 60829548 + MGP_CASTEiJ_P0028956 Aldh3a1 protein_coding protein_coding MGP_CASTEiJ_T0028957.1 MGP_CASTEiJ_G0017744.1 mouse_genomes_project 11 60825904 60835660 + MGP_CASTEiJ_P0028957 Aldh3a1 protein_coding protein_coding MGP_CASTEiJ_T0028958.1 MGP_CASTEiJ_G0017744.1 mouse_genomes_project 11 60826028 60835660 + MGP_CASTEiJ_P0028958 Aldh3a1 protein_coding protein_coding MGP_CASTEiJ_T0028959.1 MGP_CASTEiJ_G0017744.1 mouse_genomes_project 11 60829401 60859359 + MGP_CASTEiJ_P0028959 Aldh3a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003083.1 MGP_CASTEiJ_G0002871.1 mouse_genomes_project 11 62179726 62202927 + Gm12278 antisense antisense MGP_CASTEiJ_T0031485.1 MGP_CASTEiJ_G0018330.1 mouse_genomes_project 11 99273601 99282381 + MGP_CASTEiJ_P0031485 Mrpl10 protein_coding protein_coding MGP_CASTEiJ_T0031486.1 MGP_CASTEiJ_G0018330.1 mouse_genomes_project 11 99273622 99282386 + MGP_CASTEiJ_P0031486 Mrpl10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031487.1 MGP_CASTEiJ_G0018330.1 mouse_genomes_project 11 99273636 99281684 + MGP_CASTEiJ_P0031487 Mrpl10 protein_coding protein_coding MGP_CASTEiJ_T0016529.1 MGP_CASTEiJ_G0014526.1 mouse_genomes_project 11 107586414 107595518 - Gm22000 processed_transcript processed_transcript MGP_CASTEiJ_T0031794.1 MGP_CASTEiJ_G0018407.1 mouse_genomes_project 11 102109008 102112230 - MGP_CASTEiJ_P0031794 protein_coding protein_coding MGP_CASTEiJ_T0009454.1 MGP_CASTEiJ_G0007642.1 mouse_genomes_project 11 70381003 70381128 - Mir497b miRNA miRNA MGP_CASTEiJ_T0006118.1 MGP_CASTEiJ_G0005122.1 mouse_genomes_project 11 78141755 78143312 + 2210008F06Rik lincRNA lincRNA MGP_CASTEiJ_T0031365.1 MGP_CASTEiJ_G0018298.1 mouse_genomes_project 11 97944112 97950055 + MGP_CASTEiJ_P0031365 Phospho1 protein_coding protein_coding MGP_CASTEiJ_T0031366.1 MGP_CASTEiJ_G0018298.1 mouse_genomes_project 11 97944113 97952525 + MGP_CASTEiJ_P0031366 Phospho1 protein_coding protein_coding MGP_CASTEiJ_T0031367.1 MGP_CASTEiJ_G0018298.1 mouse_genomes_project 11 97950116 97950946 + MGP_CASTEiJ_P0031367 Phospho1 protein_coding protein_coding MGP_CASTEiJ_T0027824.1 MGP_CASTEiJ_G0017442.1 mouse_genomes_project 11 29931803 29992724 + MGP_CASTEiJ_P0027824 Nsg2 protein_coding protein_coding MGP_CASTEiJ_T0027825.1 MGP_CASTEiJ_G0017442.1 mouse_genomes_project 11 29931803 29952510 + MGP_CASTEiJ_P0027825 Nsg2 protein_coding protein_coding MGP_CASTEiJ_T0027826.1 MGP_CASTEiJ_G0017442.1 mouse_genomes_project 11 29931842 29967869 + MGP_CASTEiJ_P0027826 Nsg2 protein_coding protein_coding MGP_CASTEiJ_T0031751.1 MGP_CASTEiJ_G0018389.1 mouse_genomes_project 11 101508072 101539282 - MGP_CASTEiJ_P0031751 Top2a protein_coding unknown_likely_coding MGP_CASTEiJ_T0031752.1 MGP_CASTEiJ_G0018389.1 mouse_genomes_project 11 101508073 101539405 - MGP_CASTEiJ_P0031752 Top2a protein_coding protein_coding MGP_CASTEiJ_T0031753.1 MGP_CASTEiJ_G0018389.1 mouse_genomes_project 11 101508201 101510870 - Top2a protein_coding processed_transcript MGP_CASTEiJ_T0031754.1 MGP_CASTEiJ_G0018389.1 mouse_genomes_project 11 101508597 101510516 - Top2a protein_coding processed_transcript MGP_CASTEiJ_T0031755.1 MGP_CASTEiJ_G0018389.1 mouse_genomes_project 11 101515098 101516408 - Top2a protein_coding processed_transcript MGP_CASTEiJ_T0031756.1 MGP_CASTEiJ_G0018389.1 mouse_genomes_project 11 101518777 101521585 - Top2a protein_coding processed_transcript MGP_CASTEiJ_T0031757.1 MGP_CASTEiJ_G0018389.1 mouse_genomes_project 11 101531734 101537429 - Top2a protein_coding processed_transcript MGP_CASTEiJ_T0031758.1 MGP_CASTEiJ_G0018389.1 mouse_genomes_project 11 101537303 101539394 - Top2a protein_coding processed_transcript MGP_CASTEiJ_T0031681.1 MGP_CASTEiJ_G0018374.1 mouse_genomes_project 11 101011188 101016009 + MGP_CASTEiJ_P0031681 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012288.1 MGP_CASTEiJ_G0010451.1 mouse_genomes_project 11 64894297 64894784 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003196.1 MGP_CASTEiJ_G0002960.1 mouse_genomes_project 11 105216805 105218278 - Bloodlinc antisense antisense MGP_CASTEiJ_T0030390.1 MGP_CASTEiJ_G0018065.1 mouse_genomes_project 11 78645415 78704814 + MGP_CASTEiJ_P0030390 Sez6 protein_coding protein_coding MGP_CASTEiJ_T0030391.1 MGP_CASTEiJ_G0018065.1 mouse_genomes_project 11 78645454 78704814 + Sez6 protein_coding retained_intron MGP_CASTEiJ_T0030392.1 MGP_CASTEiJ_G0018065.1 mouse_genomes_project 11 78645532 78688422 + Sez6 protein_coding retained_intron MGP_CASTEiJ_T0030393.1 MGP_CASTEiJ_G0018065.1 mouse_genomes_project 11 78645627 78704806 + MGP_CASTEiJ_P0030393 Sez6 protein_coding protein_coding MGP_CASTEiJ_T0030394.1 MGP_CASTEiJ_G0018065.1 mouse_genomes_project 11 78645654 78703827 + Sez6 protein_coding retained_intron MGP_CASTEiJ_T0030395.1 MGP_CASTEiJ_G0018065.1 mouse_genomes_project 11 78668958 78679224 + Sez6 protein_coding processed_transcript MGP_CASTEiJ_T0030396.1 MGP_CASTEiJ_G0018065.1 mouse_genomes_project 11 78678296 78704814 + MGP_CASTEiJ_P0030396 Sez6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030397.1 MGP_CASTEiJ_G0018065.1 mouse_genomes_project 11 78694690 78700171 + MGP_CASTEiJ_P0030397 Sez6 protein_coding protein_coding MGP_CASTEiJ_T0030398.1 MGP_CASTEiJ_G0018065.1 mouse_genomes_project 11 78698846 78700057 + Sez6 protein_coding retained_intron MGP_CASTEiJ_T0003197.1 MGP_CASTEiJ_G0002961.1 mouse_genomes_project 11 106116327 106118519 - Gm20511 antisense antisense MGP_CASTEiJ_T0010981.1 MGP_CASTEiJ_G0009169.1 mouse_genomes_project 11 98357507 98357587 - Gm27898 misc_RNA misc_RNA MGP_CASTEiJ_T0009530.1 MGP_CASTEiJ_G0007718.1 mouse_genomes_project 11 125771932 125771992 - Mir7236 miRNA miRNA MGP_CASTEiJ_T0027562.1 MGP_CASTEiJ_G0017388.1 mouse_genomes_project 11 18776205 18832318 - MGP_CASTEiJ_P0027562 Ugp2 protein_coding protein_coding MGP_CASTEiJ_T0027563.1 MGP_CASTEiJ_G0017388.1 mouse_genomes_project 11 18776756 18833038 - MGP_CASTEiJ_P0027563 Ugp2 protein_coding protein_coding MGP_CASTEiJ_T0027564.1 MGP_CASTEiJ_G0017388.1 mouse_genomes_project 11 18777007 18784972 - Ugp2 protein_coding processed_transcript MGP_CASTEiJ_T0027565.1 MGP_CASTEiJ_G0017388.1 mouse_genomes_project 11 18777023 18778587 - Ugp2 protein_coding processed_transcript MGP_CASTEiJ_T0028905.1 MGP_CASTEiJ_G0017734.1 mouse_genomes_project 11 60309600 60351337 - MGP_CASTEiJ_P0028905 Top3a protein_coding protein_coding MGP_CASTEiJ_T0028906.1 MGP_CASTEiJ_G0017734.1 mouse_genomes_project 11 60309601 60351259 - MGP_CASTEiJ_P0028906 Top3a protein_coding protein_coding MGP_CASTEiJ_T0028907.1 MGP_CASTEiJ_G0017734.1 mouse_genomes_project 11 60311434 60351237 - MGP_CASTEiJ_P0028907 Top3a protein_coding protein_coding MGP_CASTEiJ_T0028908.1 MGP_CASTEiJ_G0017734.1 mouse_genomes_project 11 60311775 60351236 - MGP_CASTEiJ_P0028908 Top3a protein_coding protein_coding MGP_CASTEiJ_T0028909.1 MGP_CASTEiJ_G0017734.1 mouse_genomes_project 11 60319178 60322398 - Top3a protein_coding retained_intron MGP_CASTEiJ_T0028910.1 MGP_CASTEiJ_G0017734.1 mouse_genomes_project 11 60334925 60351271 - MGP_CASTEiJ_P0028910 Top3a protein_coding protein_coding MGP_CASTEiJ_T0029605.1 MGP_CASTEiJ_G0017885.1 mouse_genomes_project 11 70129475 70138951 + MGP_CASTEiJ_P0029605 Dvl2 protein_coding protein_coding MGP_CASTEiJ_T0029606.1 MGP_CASTEiJ_G0017885.1 mouse_genomes_project 11 70129497 70141129 + MGP_CASTEiJ_P0029606 Dvl2 protein_coding protein_coding MGP_CASTEiJ_T0029607.1 MGP_CASTEiJ_G0017885.1 mouse_genomes_project 11 70129660 70138553 + MGP_CASTEiJ_P0029607 Dvl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029608.1 MGP_CASTEiJ_G0017885.1 mouse_genomes_project 11 70129701 70135813 + Dvl2 protein_coding retained_intron MGP_CASTEiJ_T0029609.1 MGP_CASTEiJ_G0017885.1 mouse_genomes_project 11 70129715 70134869 + Dvl2 protein_coding retained_intron MGP_CASTEiJ_T0029610.1 MGP_CASTEiJ_G0017885.1 mouse_genomes_project 11 70134330 70136324 + Dvl2 protein_coding retained_intron MGP_CASTEiJ_T0029611.1 MGP_CASTEiJ_G0017885.1 mouse_genomes_project 11 70135830 70136920 + Dvl2 protein_coding retained_intron MGP_CASTEiJ_T0030757.1 MGP_CASTEiJ_G0018156.1 mouse_genomes_project 11 84593484 84600982 - MGP_CASTEiJ_P0030757 Gas2l2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030758.1 MGP_CASTEiJ_G0018156.1 mouse_genomes_project 11 84593484 84600982 - MGP_CASTEiJ_P0030758 Gas2l2 protein_coding protein_coding MGP_CASTEiJ_T0006106.1 MGP_CASTEiJ_G0005113.1 mouse_genomes_project 11 71827512 71887420 + 9230020A06Rik lincRNA lincRNA MGP_CASTEiJ_T0006107.1 MGP_CASTEiJ_G0005113.1 mouse_genomes_project 11 71860509 71886713 + 9230020A06Rik lincRNA lincRNA MGP_CASTEiJ_T0032732.1 MGP_CASTEiJ_G0018627.1 mouse_genomes_project 11 110979783 111045429 - MGP_CASTEiJ_P0032732 Cacng4 protein_coding protein_coding MGP_CASTEiJ_T0032733.1 MGP_CASTEiJ_G0018627.1 mouse_genomes_project 11 110982595 110989394 - Cacng4 protein_coding processed_transcript MGP_CASTEiJ_T0009510.1 MGP_CASTEiJ_G0007698.1 mouse_genomes_project 11 109940438 109940505 - Mir3064 miRNA miRNA MGP_CASTEiJ_T0028519.1 MGP_CASTEiJ_G0017627.1 mouse_genomes_project 11 53239619 53253224 + MGP_CASTEiJ_P0028519 P4ha2 protein_coding protein_coding MGP_CASTEiJ_T0028520.1 MGP_CASTEiJ_G0017627.1 mouse_genomes_project 11 53240451 53270250 + MGP_CASTEiJ_P0028520 P4ha2 protein_coding protein_coding MGP_CASTEiJ_T0028521.1 MGP_CASTEiJ_G0017627.1 mouse_genomes_project 11 53240490 53266516 + P4ha2 protein_coding retained_intron MGP_CASTEiJ_T0028522.1 MGP_CASTEiJ_G0017627.1 mouse_genomes_project 11 53240490 53270250 + MGP_CASTEiJ_P0028522 P4ha2 protein_coding protein_coding MGP_CASTEiJ_T0028523.1 MGP_CASTEiJ_G0017627.1 mouse_genomes_project 11 53240502 53250655 + P4ha2 protein_coding retained_intron MGP_CASTEiJ_T0028524.1 MGP_CASTEiJ_G0017627.1 mouse_genomes_project 11 53240502 53270260 + MGP_CASTEiJ_P0028524 P4ha2 protein_coding protein_coding MGP_CASTEiJ_T0028525.1 MGP_CASTEiJ_G0017627.1 mouse_genomes_project 11 53240507 53249334 + MGP_CASTEiJ_P0028525 P4ha2 protein_coding protein_coding MGP_CASTEiJ_T0028526.1 MGP_CASTEiJ_G0017627.1 mouse_genomes_project 11 53240518 53250583 + MGP_CASTEiJ_P0028526 P4ha2 protein_coding protein_coding MGP_CASTEiJ_T0028527.1 MGP_CASTEiJ_G0017627.1 mouse_genomes_project 11 53240595 53250594 + MGP_CASTEiJ_P0028527 P4ha2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028528.1 MGP_CASTEiJ_G0017627.1 mouse_genomes_project 11 53240772 53250594 + MGP_CASTEiJ_P0028528 P4ha2 protein_coding protein_coding MGP_CASTEiJ_T0028529.1 MGP_CASTEiJ_G0017627.1 mouse_genomes_project 11 53246354 53253314 + MGP_CASTEiJ_P0028529 P4ha2 protein_coding protein_coding MGP_CASTEiJ_T0028530.1 MGP_CASTEiJ_G0017627.1 mouse_genomes_project 11 53250040 53259298 + MGP_CASTEiJ_P0028530 P4ha2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028531.1 MGP_CASTEiJ_G0017627.1 mouse_genomes_project 11 53252242 53253314 + P4ha2 protein_coding processed_transcript MGP_CASTEiJ_T0028532.1 MGP_CASTEiJ_G0017627.1 mouse_genomes_project 11 53263421 53264811 + P4ha2 protein_coding retained_intron MGP_CASTEiJ_T0028533.1 MGP_CASTEiJ_G0017627.1 mouse_genomes_project 11 53266446 53270263 + P4ha2 protein_coding retained_intron MGP_CASTEiJ_T0031159.1 MGP_CASTEiJ_G0018253.1 mouse_genomes_project 11 94908608 94910446 + Car10 protein_coding processed_transcript MGP_CASTEiJ_T0031160.1 MGP_CASTEiJ_G0018253.1 mouse_genomes_project 11 94908984 95199118 + MGP_CASTEiJ_P0031160 Car10 protein_coding protein_coding MGP_CASTEiJ_T0031161.1 MGP_CASTEiJ_G0018253.1 mouse_genomes_project 11 94908984 95324602 + MGP_CASTEiJ_P0031161 Car10 protein_coding protein_coding MGP_CASTEiJ_T0031162.1 MGP_CASTEiJ_G0018253.1 mouse_genomes_project 11 94908984 95445663 + MGP_CASTEiJ_P0031162 Car10 protein_coding protein_coding MGP_CASTEiJ_T0031163.1 MGP_CASTEiJ_G0018253.1 mouse_genomes_project 11 94908994 95445194 + MGP_CASTEiJ_P0031163 Car10 protein_coding protein_coding MGP_CASTEiJ_T0031164.1 MGP_CASTEiJ_G0018253.1 mouse_genomes_project 11 94909869 95001624 + MGP_CASTEiJ_P0031164 Car10 protein_coding protein_coding MGP_CASTEiJ_T0031165.1 MGP_CASTEiJ_G0018253.1 mouse_genomes_project 11 94909869 95445667 + MGP_CASTEiJ_P0031165 Car10 protein_coding protein_coding MGP_CASTEiJ_T0032899.1 MGP_CASTEiJ_G0018663.1 mouse_genomes_project 11 118533613 118558110 + Dnaic2 protein_coding processed_transcript MGP_CASTEiJ_T0032900.1 MGP_CASTEiJ_G0018663.1 mouse_genomes_project 11 118533617 118572113 + MGP_CASTEiJ_P0032900 Dnaic2 protein_coding protein_coding MGP_CASTEiJ_T0032901.1 MGP_CASTEiJ_G0018663.1 mouse_genomes_project 11 118533621 118568576 + Dnaic2 protein_coding processed_transcript MGP_CASTEiJ_T0032902.1 MGP_CASTEiJ_G0018663.1 mouse_genomes_project 11 118535345 118572113 + MGP_CASTEiJ_P0032902 Dnaic2 protein_coding protein_coding MGP_CASTEiJ_T0032903.1 MGP_CASTEiJ_G0018663.1 mouse_genomes_project 11 118540542 118568686 + MGP_CASTEiJ_P0032903 Dnaic2 protein_coding protein_coding MGP_CASTEiJ_T0032904.1 MGP_CASTEiJ_G0018663.1 mouse_genomes_project 11 118547168 118568293 + Dnaic2 protein_coding processed_transcript MGP_CASTEiJ_T0032905.1 MGP_CASTEiJ_G0018663.1 mouse_genomes_project 11 118565680 118571386 + Dnaic2 protein_coding processed_transcript MGP_CASTEiJ_T0027706.1 MGP_CASTEiJ_G0017417.1 mouse_genomes_project 11 26165487 26375320 - MGP_CASTEiJ_P0027706 Ccdc85a protein_coding protein_coding MGP_CASTEiJ_T0027707.1 MGP_CASTEiJ_G0017417.1 mouse_genomes_project 11 26165494 26375320 - MGP_CASTEiJ_P0027707 Ccdc85a protein_coding protein_coding MGP_CASTEiJ_T0027708.1 MGP_CASTEiJ_G0017417.1 mouse_genomes_project 11 26165494 26375348 - MGP_CASTEiJ_P0027708 Ccdc85a protein_coding protein_coding MGP_CASTEiJ_T0027709.1 MGP_CASTEiJ_G0017417.1 mouse_genomes_project 11 26167500 26375019 - MGP_CASTEiJ_P0027709 Ccdc85a protein_coding protein_coding MGP_CASTEiJ_T0027710.1 MGP_CASTEiJ_G0017417.1 mouse_genomes_project 11 26169210 26367381 - MGP_CASTEiJ_P0027710 Ccdc85a protein_coding protein_coding MGP_CASTEiJ_T0027711.1 MGP_CASTEiJ_G0017417.1 mouse_genomes_project 11 26203825 26374666 - MGP_CASTEiJ_P0027711 Ccdc85a protein_coding unknown_likely_coding MGP_CASTEiJ_T0027712.1 MGP_CASTEiJ_G0017417.1 mouse_genomes_project 11 26366153 26375290 - Ccdc85a protein_coding retained_intron MGP_CASTEiJ_T0100451.1 MGP_CASTEiJ_G0037364.1 mouse_genomes_project 11 71554301 71554435 + snoRNA snoRNA MGP_CASTEiJ_T0012203.1 MGP_CASTEiJ_G0010366.1 mouse_genomes_project 11 28631553 28632299 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012430.1 MGP_CASTEiJ_G0010593.1 mouse_genomes_project 11 125549811 125550271 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033163.1 MGP_CASTEiJ_G0018715.1 mouse_genomes_project 11 119990518 120022729 + MGP_CASTEiJ_P0033163 Unk protein_coding protein_coding MGP_CASTEiJ_T0033164.1 MGP_CASTEiJ_G0018715.1 mouse_genomes_project 11 119990518 120022729 + MGP_CASTEiJ_P0033164 Unk protein_coding protein_coding MGP_CASTEiJ_T0033165.1 MGP_CASTEiJ_G0018715.1 mouse_genomes_project 11 119990519 120001780 + Unk protein_coding processed_transcript MGP_CASTEiJ_T0033166.1 MGP_CASTEiJ_G0018715.1 mouse_genomes_project 11 119990529 120022739 + MGP_CASTEiJ_P0033166 Unk protein_coding unknown_likely_coding MGP_CASTEiJ_T0033167.1 MGP_CASTEiJ_G0018715.1 mouse_genomes_project 11 119990529 120022739 + MGP_CASTEiJ_P0033167 Unk protein_coding unknown_likely_coding MGP_CASTEiJ_T0033168.1 MGP_CASTEiJ_G0018715.1 mouse_genomes_project 11 119998528 120022729 + Unk protein_coding processed_transcript MGP_CASTEiJ_T0033169.1 MGP_CASTEiJ_G0018715.1 mouse_genomes_project 11 120010779 120015211 + Unk protein_coding retained_intron MGP_CASTEiJ_T0033170.1 MGP_CASTEiJ_G0018715.1 mouse_genomes_project 11 120014827 120017598 + Unk protein_coding retained_intron MGP_CASTEiJ_T0033171.1 MGP_CASTEiJ_G0018715.1 mouse_genomes_project 11 120017428 120020620 + Unk protein_coding retained_intron MGP_CASTEiJ_T0003029.1 MGP_CASTEiJ_G0002822.1 mouse_genomes_project 11 26137199 26141183 + Gm12081 antisense antisense MGP_CASTEiJ_T0009405.1 MGP_CASTEiJ_G0007593.1 mouse_genomes_project 11 3393377 3393441 + Mir7651 miRNA miRNA MGP_CASTEiJ_T0033631.1 MGP_CASTEiJ_G0018798.1 mouse_genomes_project 11 124652512 124655024 + MGP_CASTEiJ_P0033631 0610009L18Rik protein_coding protein_coding MGP_CASTEiJ_T0028288.1 MGP_CASTEiJ_G0017567.1 mouse_genomes_project 11 49660252 49662008 + Grm6 protein_coding processed_transcript MGP_CASTEiJ_T0028289.1 MGP_CASTEiJ_G0017567.1 mouse_genomes_project 11 49660252 49676928 + MGP_CASTEiJ_P0028289 Grm6 protein_coding protein_coding MGP_CASTEiJ_T0028290.1 MGP_CASTEiJ_G0017567.1 mouse_genomes_project 11 49660553 49676899 + MGP_CASTEiJ_P0028290 Grm6 protein_coding protein_coding MGP_CASTEiJ_T0028291.1 MGP_CASTEiJ_G0017567.1 mouse_genomes_project 11 49660865 49676935 + MGP_CASTEiJ_P0028291 Grm6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028292.1 MGP_CASTEiJ_G0017567.1 mouse_genomes_project 11 49660867 49676935 + MGP_CASTEiJ_P0028292 Grm6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028293.1 MGP_CASTEiJ_G0017567.1 mouse_genomes_project 11 49666354 49676930 + Grm6 protein_coding processed_transcript MGP_CASTEiJ_T0009409.1 MGP_CASTEiJ_G0007597.1 mouse_genomes_project 11 18801754 18801843 - Mir1933 miRNA miRNA MGP_CASTEiJ_T0028154.1 MGP_CASTEiJ_G0017537.1 mouse_genomes_project 11 47906643 47929854 - MGP_CASTEiJ_P0028154 Btnl9 protein_coding protein_coding MGP_CASTEiJ_T0028155.1 MGP_CASTEiJ_G0017537.1 mouse_genomes_project 11 47910096 47929740 - MGP_CASTEiJ_P0028155 Btnl9 protein_coding protein_coding MGP_CASTEiJ_T0028156.1 MGP_CASTEiJ_G0017537.1 mouse_genomes_project 11 47910364 47911720 - Btnl9 protein_coding retained_intron MGP_CASTEiJ_T0028157.1 MGP_CASTEiJ_G0017537.1 mouse_genomes_project 11 47916438 47929732 - MGP_CASTEiJ_P0028157 Btnl9 protein_coding protein_coding MGP_CASTEiJ_T0028158.1 MGP_CASTEiJ_G0017537.1 mouse_genomes_project 11 47925003 47929762 - Btnl9 protein_coding processed_transcript MGP_CASTEiJ_T0003012.1 MGP_CASTEiJ_G0002810.1 mouse_genomes_project 11 4254003 4257414 - antisense antisense MGP_CASTEiJ_T0006078.1 MGP_CASTEiJ_G0005089.1 mouse_genomes_project 11 53315127 53353958 - 4933405E24Rik lincRNA lincRNA MGP_CASTEiJ_T0032263.1 MGP_CASTEiJ_G0018536.1 mouse_genomes_project 11 105128277 105145244 - MGP_CASTEiJ_P0032263 Ubtf protein_coding protein_coding MGP_CASTEiJ_T0032264.1 MGP_CASTEiJ_G0018536.1 mouse_genomes_project 11 105128278 105145244 - MGP_CASTEiJ_P0032264 Ubtf protein_coding protein_coding MGP_CASTEiJ_T0032265.1 MGP_CASTEiJ_G0018536.1 mouse_genomes_project 11 105129493 105144324 - MGP_CASTEiJ_P0032265 Ubtf protein_coding protein_coding MGP_CASTEiJ_T0032266.1 MGP_CASTEiJ_G0018536.1 mouse_genomes_project 11 105129493 105143157 - MGP_CASTEiJ_P0032266 Ubtf protein_coding protein_coding MGP_CASTEiJ_T0032267.1 MGP_CASTEiJ_G0018536.1 mouse_genomes_project 11 105129493 105143133 - MGP_CASTEiJ_P0032267 Ubtf protein_coding protein_coding MGP_CASTEiJ_T0032268.1 MGP_CASTEiJ_G0018536.1 mouse_genomes_project 11 105129493 105145244 - MGP_CASTEiJ_P0032268 Ubtf protein_coding protein_coding MGP_CASTEiJ_T0032269.1 MGP_CASTEiJ_G0018536.1 mouse_genomes_project 11 105129562 105143748 - MGP_CASTEiJ_P0032269 Ubtf protein_coding protein_coding MGP_CASTEiJ_T0032270.1 MGP_CASTEiJ_G0018536.1 mouse_genomes_project 11 105132755 105144096 - MGP_CASTEiJ_P0032270 Ubtf protein_coding protein_coding MGP_CASTEiJ_T0032271.1 MGP_CASTEiJ_G0018536.1 mouse_genomes_project 11 105132942 105145883 - MGP_CASTEiJ_P0032271 Ubtf protein_coding protein_coding MGP_CASTEiJ_T0032272.1 MGP_CASTEiJ_G0018536.1 mouse_genomes_project 11 105134985 105135893 - Ubtf protein_coding retained_intron MGP_CASTEiJ_T0032273.1 MGP_CASTEiJ_G0018536.1 mouse_genomes_project 11 105135491 105136361 - Ubtf protein_coding retained_intron MGP_CASTEiJ_T0032274.1 MGP_CASTEiJ_G0018536.1 mouse_genomes_project 11 105138206 105143128 - MGP_CASTEiJ_P0032274 Ubtf protein_coding protein_coding MGP_CASTEiJ_T0032275.1 MGP_CASTEiJ_G0018536.1 mouse_genomes_project 11 105140059 105143158 - MGP_CASTEiJ_P0032275 Ubtf protein_coding protein_coding MGP_CASTEiJ_T0032023.1 MGP_CASTEiJ_G0018492.1 mouse_genomes_project 11 103912609 103948696 - MGP_CASTEiJ_P0032023 Ezh1 protein_coding protein_coding MGP_CASTEiJ_T0032024.1 MGP_CASTEiJ_G0018492.1 mouse_genomes_project 11 103914060 103915210 - Ezh1 protein_coding processed_transcript MGP_CASTEiJ_T0032025.1 MGP_CASTEiJ_G0018492.1 mouse_genomes_project 11 103914515 103923837 - Ezh1 protein_coding processed_transcript MGP_CASTEiJ_T0032026.1 MGP_CASTEiJ_G0018492.1 mouse_genomes_project 11 103919429 103921735 - Ezh1 protein_coding processed_transcript MGP_CASTEiJ_T0032027.1 MGP_CASTEiJ_G0018492.1 mouse_genomes_project 11 103919969 103948682 - MGP_CASTEiJ_P0032027 Ezh1 protein_coding protein_coding MGP_CASTEiJ_T0032028.1 MGP_CASTEiJ_G0018492.1 mouse_genomes_project 11 103920094 103931038 - Ezh1 protein_coding processed_transcript MGP_CASTEiJ_T0032029.1 MGP_CASTEiJ_G0018492.1 mouse_genomes_project 11 103928372 103929865 - Ezh1 protein_coding processed_transcript MGP_CASTEiJ_T0032030.1 MGP_CASTEiJ_G0018492.1 mouse_genomes_project 11 103938950 103948706 - Ezh1 protein_coding processed_transcript MGP_CASTEiJ_T0032556.1 MGP_CASTEiJ_G0018589.1 mouse_genomes_project 11 108434656 108534627 - MGP_CASTEiJ_P0032556 March10 protein_coding protein_coding MGP_CASTEiJ_T0032557.1 MGP_CASTEiJ_G0018589.1 mouse_genomes_project 11 108437587 108445352 - March10 protein_coding processed_transcript MGP_CASTEiJ_T0032558.1 MGP_CASTEiJ_G0018589.1 mouse_genomes_project 11 108473071 108484706 - MGP_CASTEiJ_P0032558 March10 protein_coding protein_coding MGP_CASTEiJ_T0032559.1 MGP_CASTEiJ_G0018589.1 mouse_genomes_project 11 108478041 108528030 - MGP_CASTEiJ_P0032559 March10 protein_coding protein_coding MGP_CASTEiJ_T0028551.1 MGP_CASTEiJ_G0017633.1 mouse_genomes_project 11 53673121 53849363 + MGP_CASTEiJ_P0028551 Rapgef6 protein_coding protein_coding MGP_CASTEiJ_T0028552.1 MGP_CASTEiJ_G0017633.1 mouse_genomes_project 11 53673163 53703523 + Rapgef6 protein_coding processed_transcript MGP_CASTEiJ_T0028553.1 MGP_CASTEiJ_G0017633.1 mouse_genomes_project 11 53673164 53782147 + MGP_CASTEiJ_P0028553 Rapgef6 protein_coding protein_coding MGP_CASTEiJ_T0028554.1 MGP_CASTEiJ_G0017633.1 mouse_genomes_project 11 53673164 53847060 + MGP_CASTEiJ_P0028554 Rapgef6 protein_coding protein_coding MGP_CASTEiJ_T0028555.1 MGP_CASTEiJ_G0017633.1 mouse_genomes_project 11 53673185 53712143 + Rapgef6 protein_coding processed_transcript MGP_CASTEiJ_T0028556.1 MGP_CASTEiJ_G0017633.1 mouse_genomes_project 11 53742047 53786012 + Rapgef6 protein_coding processed_transcript MGP_CASTEiJ_T0028557.1 MGP_CASTEiJ_G0017633.1 mouse_genomes_project 11 53742952 53846186 + MGP_CASTEiJ_P0028557 Rapgef6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028558.1 MGP_CASTEiJ_G0017633.1 mouse_genomes_project 11 53769231 53837287 + MGP_CASTEiJ_P0028558 Rapgef6 protein_coding protein_coding MGP_CASTEiJ_T0028559.1 MGP_CASTEiJ_G0017633.1 mouse_genomes_project 11 53769231 53837366 + MGP_CASTEiJ_P0028559 Rapgef6 protein_coding protein_coding MGP_CASTEiJ_T0028560.1 MGP_CASTEiJ_G0017633.1 mouse_genomes_project 11 53840717 53846567 + MGP_CASTEiJ_P0028560 Rapgef6 protein_coding protein_coding MGP_CASTEiJ_T0031078.1 MGP_CASTEiJ_G0018232.1 mouse_genomes_project 11 89751478 89758770 + MGP_CASTEiJ_P0031078 Mrps23 protein_coding protein_coding MGP_CASTEiJ_T0031079.1 MGP_CASTEiJ_G0018232.1 mouse_genomes_project 11 89751501 89758770 + MGP_CASTEiJ_P0031079 Mrps23 protein_coding protein_coding MGP_CASTEiJ_T0031080.1 MGP_CASTEiJ_G0018232.1 mouse_genomes_project 11 89751514 89757942 + MGP_CASTEiJ_P0031080 Mrps23 protein_coding protein_coding MGP_CASTEiJ_T0031081.1 MGP_CASTEiJ_G0018232.1 mouse_genomes_project 11 89751514 89757481 + MGP_CASTEiJ_P0031081 Mrps23 protein_coding protein_coding MGP_CASTEiJ_T0031082.1 MGP_CASTEiJ_G0018232.1 mouse_genomes_project 11 89751534 89758243 + MGP_CASTEiJ_P0031082 Mrps23 protein_coding protein_coding MGP_CASTEiJ_T0029427.1 MGP_CASTEiJ_G0017845.1 mouse_genomes_project 11 69647837 69650005 - Wrap53 protein_coding processed_transcript MGP_CASTEiJ_T0029428.1 MGP_CASTEiJ_G0017845.1 mouse_genomes_project 11 69647838 69666839 - MGP_CASTEiJ_P0029428 Wrap53 protein_coding protein_coding MGP_CASTEiJ_T0029429.1 MGP_CASTEiJ_G0017845.1 mouse_genomes_project 11 69665222 69667780 - MGP_CASTEiJ_P0029429 Wrap53 protein_coding protein_coding MGP_CASTEiJ_T0102004.1 MGP_CASTEiJ_G0038729.1 mouse_genomes_project 11 96756743 96757479 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0027388.1 MGP_CASTEiJ_G0017348.1 mouse_genomes_project 11 4126279 4248319 + MGP_CASTEiJ_P0027388 protein_coding protein_coding MGP_CASTEiJ_T0027389.1 MGP_CASTEiJ_G0017348.1 mouse_genomes_project 11 4229662 4242711 + protein_coding processed_transcript MGP_CASTEiJ_T0033710.1 MGP_CASTEiJ_G0018816.1 mouse_genomes_project 11 124938968 124950008 + MGP_CASTEiJ_P0033710 Anapc11 protein_coding protein_coding MGP_CASTEiJ_T0033711.1 MGP_CASTEiJ_G0018816.1 mouse_genomes_project 11 124938987 124941222 + Anapc11 protein_coding retained_intron MGP_CASTEiJ_T0033712.1 MGP_CASTEiJ_G0018816.1 mouse_genomes_project 11 124939079 124947586 + MGP_CASTEiJ_P0033712 Anapc11 protein_coding protein_coding MGP_CASTEiJ_T0033713.1 MGP_CASTEiJ_G0018816.1 mouse_genomes_project 11 124945743 124947302 + Anapc11 protein_coding processed_transcript MGP_CASTEiJ_T0098739.1 MGP_CASTEiJ_G0035670.1 mouse_genomes_project 11 120137228 120137354 - Gm26413 scaRNA scaRNA MGP_CASTEiJ_T0030755.1 MGP_CASTEiJ_G0018155.1 mouse_genomes_project 11 84581295 84592585 + MGP_CASTEiJ_P0030755 Rasl10b protein_coding protein_coding MGP_CASTEiJ_T0030756.1 MGP_CASTEiJ_G0018155.1 mouse_genomes_project 11 84581462 84592579 + MGP_CASTEiJ_P0030756 Rasl10b protein_coding unknown_likely_coding MGP_CASTEiJ_T0030331.1 MGP_CASTEiJ_G0018055.1 mouse_genomes_project 11 78147013 78163467 + MGP_CASTEiJ_P0030331 Git1 protein_coding protein_coding MGP_CASTEiJ_T0030332.1 MGP_CASTEiJ_G0018055.1 mouse_genomes_project 11 78147022 78163467 + MGP_CASTEiJ_P0030332 Git1 protein_coding protein_coding MGP_CASTEiJ_T0030333.1 MGP_CASTEiJ_G0018055.1 mouse_genomes_project 11 78154786 78158794 + Git1 protein_coding retained_intron MGP_CASTEiJ_T0030334.1 MGP_CASTEiJ_G0018055.1 mouse_genomes_project 11 78156671 78160766 + Git1 protein_coding retained_intron MGP_CASTEiJ_T0030335.1 MGP_CASTEiJ_G0018055.1 mouse_genomes_project 11 78158157 78160513 + Git1 protein_coding retained_intron MGP_CASTEiJ_T0030336.1 MGP_CASTEiJ_G0018055.1 mouse_genomes_project 11 78160816 78161720 + Git1 protein_coding retained_intron MGP_CASTEiJ_T0029786.1 MGP_CASTEiJ_G0017920.1 mouse_genomes_project 11 70872616 70892487 - MGP_CASTEiJ_P0029786 Camta2 protein_coding protein_coding MGP_CASTEiJ_T0029787.1 MGP_CASTEiJ_G0017920.1 mouse_genomes_project 11 70872616 70892354 - MGP_CASTEiJ_P0029787 Camta2 protein_coding protein_coding MGP_CASTEiJ_T0029788.1 MGP_CASTEiJ_G0017920.1 mouse_genomes_project 11 70872616 70892325 - MGP_CASTEiJ_P0029788 Camta2 protein_coding protein_coding MGP_CASTEiJ_T0029789.1 MGP_CASTEiJ_G0017920.1 mouse_genomes_project 11 70872616 70890771 - MGP_CASTEiJ_P0029789 Camta2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029790.1 MGP_CASTEiJ_G0017920.1 mouse_genomes_project 11 70872616 70892325 - MGP_CASTEiJ_P0029790 Camta2 protein_coding protein_coding MGP_CASTEiJ_T0029791.1 MGP_CASTEiJ_G0017920.1 mouse_genomes_project 11 70872616 70892335 - MGP_CASTEiJ_P0029791 Camta2 protein_coding protein_coding MGP_CASTEiJ_T0029792.1 MGP_CASTEiJ_G0017920.1 mouse_genomes_project 11 70872617 70892337 - MGP_CASTEiJ_P0029792 Camta2 protein_coding protein_coding MGP_CASTEiJ_T0029793.1 MGP_CASTEiJ_G0017920.1 mouse_genomes_project 11 70872619 70888159 - Camta2 protein_coding retained_intron MGP_CASTEiJ_T0029794.1 MGP_CASTEiJ_G0017920.1 mouse_genomes_project 11 70890295 70892330 - Camta2 protein_coding retained_intron MGP_CASTEiJ_T0030736.1 MGP_CASTEiJ_G0018148.1 mouse_genomes_project 11 84220775 84226367 + MGP_CASTEiJ_P0030736 Slfn2 protein_coding protein_coding MGP_CASTEiJ_T0099271.1 MGP_CASTEiJ_G0036184.1 mouse_genomes_project 11 100777229 100777320 - Gm25048 snRNA snRNA MGP_CASTEiJ_T0012231.1 MGP_CASTEiJ_G0010394.1 mouse_genomes_project 11 44605005 44605279 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101990.1 MGP_CASTEiJ_G0038715.1 mouse_genomes_project 11 74099356 74105496 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0031257.1 MGP_CASTEiJ_G0018269.1 mouse_genomes_project 11 96420254 96440543 - MGP_CASTEiJ_P0031257 Mycbpap protein_coding unknown_likely_coding MGP_CASTEiJ_T0031258.1 MGP_CASTEiJ_G0018269.1 mouse_genomes_project 11 96420254 96440970 - MGP_CASTEiJ_P0031258 Mycbpap protein_coding protein_coding MGP_CASTEiJ_T0031259.1 MGP_CASTEiJ_G0018269.1 mouse_genomes_project 11 96420254 96426249 - MGP_CASTEiJ_P0031259 Mycbpap protein_coding protein_coding MGP_CASTEiJ_T0031260.1 MGP_CASTEiJ_G0018269.1 mouse_genomes_project 11 96420256 96422461 - Mycbpap protein_coding processed_transcript MGP_CASTEiJ_T0031261.1 MGP_CASTEiJ_G0018269.1 mouse_genomes_project 11 96420256 96440970 - Mycbpap protein_coding retained_intron MGP_CASTEiJ_T0031262.1 MGP_CASTEiJ_G0018269.1 mouse_genomes_project 11 96421895 96422448 - Mycbpap protein_coding retained_intron MGP_CASTEiJ_T0031263.1 MGP_CASTEiJ_G0018269.1 mouse_genomes_project 11 96426589 96429049 - Mycbpap protein_coding retained_intron MGP_CASTEiJ_T0030024.1 MGP_CASTEiJ_G0017977.1 mouse_genomes_project 11 74059646 74060585 - MGP_CASTEiJ_P0030024 Olfr385 protein_coding protein_coding MGP_CASTEiJ_T0030669.1 MGP_CASTEiJ_G0018130.1 mouse_genomes_project 11 83072970 83074835 + MGP_CASTEiJ_P0030669 Ccl2 protein_coding protein_coding MGP_CASTEiJ_T0030670.1 MGP_CASTEiJ_G0018130.1 mouse_genomes_project 11 83073009 83074832 + Ccl2 protein_coding retained_intron MGP_CASTEiJ_T0031926.1 MGP_CASTEiJ_G0018469.1 mouse_genomes_project 11 103366467 103375645 - MGP_CASTEiJ_P0031926 Dhx58 protein_coding protein_coding MGP_CASTEiJ_T0031927.1 MGP_CASTEiJ_G0018469.1 mouse_genomes_project 11 103366646 103368196 - Dhx58 protein_coding processed_transcript MGP_CASTEiJ_T0031928.1 MGP_CASTEiJ_G0018469.1 mouse_genomes_project 11 103366836 103370790 - Dhx58 protein_coding processed_transcript MGP_CASTEiJ_T0031929.1 MGP_CASTEiJ_G0018469.1 mouse_genomes_project 11 103372760 103375627 - Dhx58 protein_coding processed_transcript MGP_CASTEiJ_T0031930.1 MGP_CASTEiJ_G0018469.1 mouse_genomes_project 11 103373515 103374723 - Dhx58 protein_coding processed_transcript MGP_CASTEiJ_T0031931.1 MGP_CASTEiJ_G0018469.1 mouse_genomes_project 11 103374135 103375645 - Dhx58 protein_coding processed_transcript MGP_CASTEiJ_T0027902.1 MGP_CASTEiJ_G0017462.1 mouse_genomes_project 11 31261323 31394165 - MGP_CASTEiJ_P0027902 Ranbp17 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027903.1 MGP_CASTEiJ_G0017462.1 mouse_genomes_project 11 31261327 31582400 - MGP_CASTEiJ_P0027903 Ranbp17 protein_coding protein_coding MGP_CASTEiJ_T0027906.1 MGP_CASTEiJ_G0017462.1 mouse_genomes_project 11 31347820 31582297 - MGP_CASTEiJ_P0027906 Ranbp17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027907.1 MGP_CASTEiJ_G0017462.1 mouse_genomes_project 11 31354189 31384587 - Ranbp17 protein_coding processed_transcript MGP_CASTEiJ_T0027908.1 MGP_CASTEiJ_G0017462.1 mouse_genomes_project 11 31537036 31582285 - MGP_CASTEiJ_P0027908 Ranbp17 protein_coding protein_coding MGP_CASTEiJ_T0027909.1 MGP_CASTEiJ_G0017462.1 mouse_genomes_project 11 31550750 31581749 - MGP_CASTEiJ_P0027909 Ranbp17 protein_coding protein_coding MGP_CASTEiJ_T0031875.1 MGP_CASTEiJ_G0018460.1 mouse_genomes_project 11 103087145 103107524 - MGP_CASTEiJ_P0031875 Nt5c3b protein_coding protein_coding MGP_CASTEiJ_T0031876.1 MGP_CASTEiJ_G0018460.1 mouse_genomes_project 11 103087145 103108250 - MGP_CASTEiJ_P0031876 Nt5c3b protein_coding protein_coding MGP_CASTEiJ_T0031878.1 MGP_CASTEiJ_G0018460.1 mouse_genomes_project 11 103094411 103107424 - MGP_CASTEiJ_P0031878 Nt5c3b protein_coding unknown_likely_coding MGP_CASTEiJ_T0031879.1 MGP_CASTEiJ_G0018460.1 mouse_genomes_project 11 103094631 103107490 - MGP_CASTEiJ_P0031879 Nt5c3b protein_coding protein_coding MGP_CASTEiJ_T0031880.1 MGP_CASTEiJ_G0018460.1 mouse_genomes_project 11 103094698 103096369 - Nt5c3b protein_coding processed_transcript MGP_CASTEiJ_T0031881.1 MGP_CASTEiJ_G0018460.1 mouse_genomes_project 11 103097751 103107351 - Nt5c3b protein_coding processed_transcript MGP_CASTEiJ_T0031882.1 MGP_CASTEiJ_G0018460.1 mouse_genomes_project 11 103097788 103107508 - Nt5c3b protein_coding processed_transcript MGP_CASTEiJ_T0031883.1 MGP_CASTEiJ_G0018460.1 mouse_genomes_project 11 103098538 103107451 - Nt5c3b protein_coding processed_transcript MGP_CASTEiJ_T0031884.1 MGP_CASTEiJ_G0018460.1 mouse_genomes_project 11 103104703 103107364 - Nt5c3b protein_coding processed_transcript MGP_CASTEiJ_T0031885.1 MGP_CASTEiJ_G0018460.1 mouse_genomes_project 11 103105964 103107362 - Nt5c3b protein_coding processed_transcript MGP_CASTEiJ_T0100463.1 MGP_CASTEiJ_G0037376.1 mouse_genomes_project 11 79341731 79341822 - Gm22947 snoRNA snoRNA MGP_CASTEiJ_T0016494.1 MGP_CASTEiJ_G0014504.1 mouse_genomes_project 11 84761817 84813608 + E230016K23Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016495.1 MGP_CASTEiJ_G0014504.1 mouse_genomes_project 11 84761845 84786310 + E230016K23Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016496.1 MGP_CASTEiJ_G0014504.1 mouse_genomes_project 11 84811583 84812818 + E230016K23Rik processed_transcript processed_transcript MGP_CASTEiJ_T0032740.1 MGP_CASTEiJ_G0018630.1 mouse_genomes_project 11 111624518 111679277 + MGP_CASTEiJ_P0032740 Apoh protein_coding protein_coding MGP_CASTEiJ_T0032741.1 MGP_CASTEiJ_G0018630.1 mouse_genomes_project 11 111664394 111679222 + MGP_CASTEiJ_P0032741 Apoh protein_coding protein_coding MGP_CASTEiJ_T0032742.1 MGP_CASTEiJ_G0018630.1 mouse_genomes_project 11 111664399 111685257 + MGP_CASTEiJ_P0032742 Apoh protein_coding protein_coding MGP_CASTEiJ_T0032743.1 MGP_CASTEiJ_G0018630.1 mouse_genomes_project 11 111678664 111694228 + MGP_CASTEiJ_P0032743 Apoh protein_coding protein_coding MGP_CASTEiJ_T0027866.1 MGP_CASTEiJ_G0017448.1 mouse_genomes_project 11 30229687 30231474 + MGP_CASTEiJ_P0027866 Hba-x protein_coding protein_coding MGP_CASTEiJ_T0027867.1 MGP_CASTEiJ_G0017448.1 mouse_genomes_project 11 30230179 30231474 + MGP_CASTEiJ_P0027867 Hba-x protein_coding protein_coding MGP_CASTEiJ_T0028588.1 MGP_CASTEiJ_G0017639.1 mouse_genomes_project 11 54145025 54201038 - MGP_CASTEiJ_P0028588 Anxa6 protein_coding protein_coding MGP_CASTEiJ_T0028589.1 MGP_CASTEiJ_G0017639.1 mouse_genomes_project 11 54145025 54201038 - MGP_CASTEiJ_P0028589 Anxa6 protein_coding protein_coding MGP_CASTEiJ_T0028590.1 MGP_CASTEiJ_G0017639.1 mouse_genomes_project 11 54156882 54201008 - Anxa6 protein_coding processed_transcript MGP_CASTEiJ_T0098468.1 MGP_CASTEiJ_G0035399.1 mouse_genomes_project 11 100612695 100612802 - n-R5s73 rRNA rRNA MGP_CASTEiJ_T0030179.1 MGP_CASTEiJ_G0018025.1 mouse_genomes_project 11 76145698 76187664 + MGP_CASTEiJ_P0030179 Pitpna protein_coding protein_coding MGP_CASTEiJ_T0030180.1 MGP_CASTEiJ_G0018025.1 mouse_genomes_project 11 76145709 76187638 + MGP_CASTEiJ_P0030180 Pitpna protein_coding protein_coding MGP_CASTEiJ_T0030181.1 MGP_CASTEiJ_G0018025.1 mouse_genomes_project 11 76145720 76185590 + MGP_CASTEiJ_P0030181 Pitpna protein_coding protein_coding MGP_CASTEiJ_T0030182.1 MGP_CASTEiJ_G0018025.1 mouse_genomes_project 11 76145760 76156799 + Pitpna protein_coding retained_intron MGP_CASTEiJ_T0030183.1 MGP_CASTEiJ_G0018025.1 mouse_genomes_project 11 76145760 76185293 + MGP_CASTEiJ_P0030183 Pitpna protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030184.1 MGP_CASTEiJ_G0018025.1 mouse_genomes_project 11 76179368 76185166 + Pitpna protein_coding processed_transcript MGP_CASTEiJ_T0012256.1 MGP_CASTEiJ_G0010419.1 mouse_genomes_project 11 53542447 53542745 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003220.1 MGP_CASTEiJ_G0002982.1 mouse_genomes_project 11 112684880 112696377 - Gm11696 antisense antisense MGP_CASTEiJ_T0003221.1 MGP_CASTEiJ_G0002982.1 mouse_genomes_project 11 112685816 112686477 - Gm11696 antisense antisense MGP_CASTEiJ_T0003222.1 MGP_CASTEiJ_G0002982.1 mouse_genomes_project 11 112686829 112696821 - Gm11696 antisense antisense MGP_CASTEiJ_T0003223.1 MGP_CASTEiJ_G0002982.1 mouse_genomes_project 11 112687212 112696410 - Gm11696 antisense antisense MGP_CASTEiJ_T0028940.1 MGP_CASTEiJ_G0017741.1 mouse_genomes_project 11 60624473 60672336 + MGP_CASTEiJ_P0028940 Kcnj12 protein_coding protein_coding MGP_CASTEiJ_T0028941.1 MGP_CASTEiJ_G0017741.1 mouse_genomes_project 11 60666988 60672336 + MGP_CASTEiJ_P0028941 Kcnj12 protein_coding protein_coding MGP_CASTEiJ_T0028942.1 MGP_CASTEiJ_G0017741.1 mouse_genomes_project 11 60666988 60672332 + MGP_CASTEiJ_P0028942 Kcnj12 protein_coding protein_coding MGP_CASTEiJ_T0006091.1 MGP_CASTEiJ_G0005101.1 mouse_genomes_project 11 62935888 62952407 + B430319H21Rik lincRNA lincRNA MGP_CASTEiJ_T0016530.1 MGP_CASTEiJ_G0014527.1 mouse_genomes_project 11 108436757 108465755 + Gm11638 processed_transcript processed_transcript MGP_CASTEiJ_T0009444.1 MGP_CASTEiJ_G0007632.1 mouse_genomes_project 11 65617848 65617948 - Mir744 miRNA miRNA MGP_CASTEiJ_T0032527.1 MGP_CASTEiJ_G0018584.1 mouse_genomes_project 11 107721026 107797490 + MGP_CASTEiJ_P0032527 protein_coding protein_coding MGP_CASTEiJ_T0032528.1 MGP_CASTEiJ_G0018584.1 mouse_genomes_project 11 107748939 107768587 + protein_coding processed_transcript MGP_CASTEiJ_T0012403.1 MGP_CASTEiJ_G0010566.1 mouse_genomes_project 11 111995951 111996375 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010972.1 MGP_CASTEiJ_G0009160.1 mouse_genomes_project 11 59625537 59625664 + Gm27511 misc_RNA misc_RNA MGP_CASTEiJ_T0028600.1 MGP_CASTEiJ_G0017644.1 mouse_genomes_project 11 54387110 54421722 + MGP_CASTEiJ_P0028600 Slc36a1 protein_coding protein_coding MGP_CASTEiJ_T0028601.1 MGP_CASTEiJ_G0017644.1 mouse_genomes_project 11 54387122 54399738 + Slc36a1 protein_coding processed_transcript MGP_CASTEiJ_T0028602.1 MGP_CASTEiJ_G0017644.1 mouse_genomes_project 11 54387134 54407567 + MGP_CASTEiJ_P0028602 Slc36a1 protein_coding protein_coding MGP_CASTEiJ_T0028603.1 MGP_CASTEiJ_G0017644.1 mouse_genomes_project 11 54387136 54419280 + MGP_CASTEiJ_P0028603 Slc36a1 protein_coding protein_coding MGP_CASTEiJ_T0028604.1 MGP_CASTEiJ_G0017644.1 mouse_genomes_project 11 54399270 54418151 + MGP_CASTEiJ_P0028604 Slc36a1 protein_coding protein_coding MGP_CASTEiJ_T0028216.1 MGP_CASTEiJ_G0017553.1 mouse_genomes_project 11 48776549 48857903 + MGP_CASTEiJ_P0028216 Rnf130 protein_coding protein_coding MGP_CASTEiJ_T0028217.1 MGP_CASTEiJ_G0017553.1 mouse_genomes_project 11 48776551 48857898 + MGP_CASTEiJ_P0028217 Rnf130 protein_coding protein_coding MGP_CASTEiJ_T0028218.1 MGP_CASTEiJ_G0017553.1 mouse_genomes_project 11 48846827 48857903 + Rnf130 protein_coding processed_transcript MGP_CASTEiJ_T0012116.1 MGP_CASTEiJ_G0010279.1 mouse_genomes_project 11 1090184 1090696 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006030.1 MGP_CASTEiJ_G0005050.1 mouse_genomes_project 11 22050843 22350140 + lincRNA lincRNA MGP_CASTEiJ_T0003224.1 MGP_CASTEiJ_G0002983.1 mouse_genomes_project 11 112771805 112774865 - antisense antisense MGP_CASTEiJ_T0031800.1 MGP_CASTEiJ_G0018413.1 mouse_genomes_project 11 102154798 102155677 - MGP_CASTEiJ_P0031800 Krtap1-3 protein_coding protein_coding MGP_CASTEiJ_T0028880.1 MGP_CASTEiJ_G0017728.1 mouse_genomes_project 11 60002598 60009915 + Drg2 protein_coding retained_intron MGP_CASTEiJ_T0028881.1 MGP_CASTEiJ_G0017728.1 mouse_genomes_project 11 60002598 60016286 + MGP_CASTEiJ_P0028881 Drg2 protein_coding protein_coding MGP_CASTEiJ_T0028882.1 MGP_CASTEiJ_G0017728.1 mouse_genomes_project 11 60002631 60010709 + Drg2 protein_coding retained_intron MGP_CASTEiJ_T0028883.1 MGP_CASTEiJ_G0017728.1 mouse_genomes_project 11 60007429 60008397 + Drg2 protein_coding retained_intron MGP_CASTEiJ_T0028884.1 MGP_CASTEiJ_G0017728.1 mouse_genomes_project 11 60009568 60011103 + Drg2 protein_coding retained_intron MGP_CASTEiJ_T0009470.1 MGP_CASTEiJ_G0007658.1 mouse_genomes_project 11 78809882 78809948 + Mir144 miRNA miRNA MGP_CASTEiJ_T0028662.1 MGP_CASTEiJ_G0017662.1 mouse_genomes_project 11 57544738 57554316 + MGP_CASTEiJ_P0028662 Igtp protein_coding protein_coding MGP_CASTEiJ_T0028663.1 MGP_CASTEiJ_G0017662.1 mouse_genomes_project 11 57544758 57554290 + MGP_CASTEiJ_P0028663 Igtp protein_coding protein_coding MGP_CASTEiJ_T0028664.1 MGP_CASTEiJ_G0017662.1 mouse_genomes_project 11 57544760 57554300 + MGP_CASTEiJ_P0028664 Igtp protein_coding protein_coding MGP_CASTEiJ_T0030789.1 MGP_CASTEiJ_G0018169.1 mouse_genomes_project 11 84977252 84989255 + MGP_CASTEiJ_P0030789 Wfdc21 protein_coding protein_coding MGP_CASTEiJ_T0006095.1 MGP_CASTEiJ_G0005105.1 mouse_genomes_project 11 65146141 65158845 - Gm12295 lincRNA lincRNA MGP_CASTEiJ_T0006096.1 MGP_CASTEiJ_G0005105.1 mouse_genomes_project 11 65156960 65242822 - Gm12295 lincRNA lincRNA MGP_CASTEiJ_T0098454.1 MGP_CASTEiJ_G0035385.1 mouse_genomes_project 11 8391899 8392029 + Gm23065 rRNA rRNA MGP_CASTEiJ_T0012145.1 MGP_CASTEiJ_G0010308.1 mouse_genomes_project 11 12769085 12776532 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012227.1 MGP_CASTEiJ_G0010390.1 mouse_genomes_project 11 42109591 42110275 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003053.1 MGP_CASTEiJ_G0002845.1 mouse_genomes_project 11 51255016 51266440 + A630014C17Rik antisense antisense MGP_CASTEiJ_T0012142.1 MGP_CASTEiJ_G0010305.1 mouse_genomes_project 11 12029124 12029721 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000800.1 MGP_CASTEiJ_G0000740.1 mouse_genomes_project 11 6864850 6865213 - TEC TEC MGP_CASTEiJ_T0029266.1 MGP_CASTEiJ_G0017809.1 mouse_genomes_project 11 68435082 68482897 + Pik3r5 protein_coding processed_transcript MGP_CASTEiJ_T0029267.1 MGP_CASTEiJ_G0017809.1 mouse_genomes_project 11 68435117 68443264 + Pik3r5 protein_coding processed_transcript MGP_CASTEiJ_T0029268.1 MGP_CASTEiJ_G0017809.1 mouse_genomes_project 11 68435199 68506434 + MGP_CASTEiJ_P0029268 Pik3r5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029269.1 MGP_CASTEiJ_G0017809.1 mouse_genomes_project 11 68479924 68502248 + Pik3r5 protein_coding processed_transcript MGP_CASTEiJ_T0029270.1 MGP_CASTEiJ_G0017809.1 mouse_genomes_project 11 68481610 68499326 + Pik3r5 protein_coding processed_transcript MGP_CASTEiJ_T0028322.1 MGP_CASTEiJ_G0017577.1 mouse_genomes_project 11 49899562 49920221 + MGP_CASTEiJ_P0028322 Zfp354a protein_coding protein_coding MGP_CASTEiJ_T0028323.1 MGP_CASTEiJ_G0017577.1 mouse_genomes_project 11 49899564 49900381 + Zfp354a protein_coding processed_transcript MGP_CASTEiJ_T0028324.1 MGP_CASTEiJ_G0017577.1 mouse_genomes_project 11 49899602 49921667 + MGP_CASTEiJ_P0028324 Zfp354a protein_coding protein_coding MGP_CASTEiJ_T0028325.1 MGP_CASTEiJ_G0017577.1 mouse_genomes_project 11 49899637 49928050 + MGP_CASTEiJ_P0028325 Zfp354a protein_coding unknown_likely_coding MGP_CASTEiJ_T0028326.1 MGP_CASTEiJ_G0017577.1 mouse_genomes_project 11 49900124 49919593 + MGP_CASTEiJ_P0028326 Zfp354a protein_coding protein_coding MGP_CASTEiJ_T0028620.1 MGP_CASTEiJ_G0017649.1 mouse_genomes_project 11 54709692 54820124 - MGP_CASTEiJ_P0028620 Glra1 protein_coding protein_coding MGP_CASTEiJ_T0028621.1 MGP_CASTEiJ_G0017649.1 mouse_genomes_project 11 54709692 54820036 - MGP_CASTEiJ_P0028621 Glra1 protein_coding protein_coding MGP_CASTEiJ_T0028622.1 MGP_CASTEiJ_G0017649.1 mouse_genomes_project 11 54709692 54820501 - MGP_CASTEiJ_P0028622 Glra1 protein_coding protein_coding MGP_CASTEiJ_T0030105.1 MGP_CASTEiJ_G0018009.1 mouse_genomes_project 11 75411335 75439080 - MGP_CASTEiJ_P0030105 Srr protein_coding protein_coding MGP_CASTEiJ_T0030106.1 MGP_CASTEiJ_G0018009.1 mouse_genomes_project 11 75411485 75438957 - Srr protein_coding processed_transcript MGP_CASTEiJ_T0030107.1 MGP_CASTEiJ_G0018009.1 mouse_genomes_project 11 75411766 75439055 - MGP_CASTEiJ_P0030107 Srr protein_coding protein_coding MGP_CASTEiJ_T0030108.1 MGP_CASTEiJ_G0018009.1 mouse_genomes_project 11 75411772 75439230 - MGP_CASTEiJ_P0030108 Srr protein_coding protein_coding MGP_CASTEiJ_T0030109.1 MGP_CASTEiJ_G0018009.1 mouse_genomes_project 11 75411792 75439055 - MGP_CASTEiJ_P0030109 Srr protein_coding protein_coding MGP_CASTEiJ_T0030110.1 MGP_CASTEiJ_G0018009.1 mouse_genomes_project 11 75414716 75438964 - MGP_CASTEiJ_P0030110 Srr protein_coding protein_coding MGP_CASTEiJ_T0030111.1 MGP_CASTEiJ_G0018009.1 mouse_genomes_project 11 75415197 75438942 - MGP_CASTEiJ_P0030111 Srr protein_coding protein_coding MGP_CASTEiJ_T0030112.1 MGP_CASTEiJ_G0018009.1 mouse_genomes_project 11 75415342 75438985 - Srr protein_coding retained_intron MGP_CASTEiJ_T0030113.1 MGP_CASTEiJ_G0018009.1 mouse_genomes_project 11 75415429 75438957 - Srr protein_coding retained_intron MGP_CASTEiJ_T0030114.1 MGP_CASTEiJ_G0018009.1 mouse_genomes_project 11 75416069 75438940 - MGP_CASTEiJ_P0030114 Srr protein_coding protein_coding MGP_CASTEiJ_T0012368.1 MGP_CASTEiJ_G0010531.1 mouse_genomes_project 11 99082664 99083472 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032020.1 MGP_CASTEiJ_G0018491.1 mouse_genomes_project 11 103892982 103895456 - MGP_CASTEiJ_P0032020 Ccr10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099226.1 MGP_CASTEiJ_G0036139.1 mouse_genomes_project 11 32924794 32924901 + Gm25799 snRNA snRNA MGP_CASTEiJ_T0031184.1 MGP_CASTEiJ_G0018257.1 mouse_genomes_project 11 95812088 95830524 - MGP_CASTEiJ_P0031184 Gm20390 protein_coding protein_coding MGP_CASTEiJ_T0028509.1 MGP_CASTEiJ_G0017625.1 mouse_genomes_project 11 53107667 53154215 - MGP_CASTEiJ_P0028509 Slc22a4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028510.1 MGP_CASTEiJ_G0017625.1 mouse_genomes_project 11 53107667 53154210 - MGP_CASTEiJ_P0028510 Slc22a4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028511.1 MGP_CASTEiJ_G0017625.1 mouse_genomes_project 11 53109437 53154185 - MGP_CASTEiJ_P0028511 Slc22a4 protein_coding protein_coding MGP_CASTEiJ_T0028512.1 MGP_CASTEiJ_G0017625.1 mouse_genomes_project 11 53118301 53134002 - Slc22a4 protein_coding processed_transcript MGP_CASTEiJ_T0028513.1 MGP_CASTEiJ_G0017625.1 mouse_genomes_project 11 53140094 53154047 - Slc22a4 protein_coding processed_transcript MGP_CASTEiJ_T0012382.1 MGP_CASTEiJ_G0010545.1 mouse_genomes_project 11 104087857 104088094 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033800.1 MGP_CASTEiJ_G0018830.1 mouse_genomes_project 11 125142728 125146044 - Rfng protein_coding processed_transcript MGP_CASTEiJ_T0033801.1 MGP_CASTEiJ_G0018830.1 mouse_genomes_project 11 125142730 125146066 - MGP_CASTEiJ_P0033801 Rfng protein_coding protein_coding MGP_CASTEiJ_T0029141.1 MGP_CASTEiJ_G0017775.1 mouse_genomes_project 11 62702643 62740036 + MGP_CASTEiJ_P0029141 Cdrt4 protein_coding protein_coding MGP_CASTEiJ_T0009524.1 MGP_CASTEiJ_G0007712.1 mouse_genomes_project 11 124293898 124293996 - Mir338 miRNA miRNA MGP_CASTEiJ_T0029099.1 MGP_CASTEiJ_G0017766.1 mouse_genomes_project 11 62287888 62316249 + Trpv2 protein_coding processed_transcript MGP_CASTEiJ_T0029100.1 MGP_CASTEiJ_G0017766.1 mouse_genomes_project 11 62287940 62317499 + MGP_CASTEiJ_P0029100 Trpv2 protein_coding protein_coding MGP_CASTEiJ_T0029101.1 MGP_CASTEiJ_G0017766.1 mouse_genomes_project 11 62288943 62295113 + Trpv2 protein_coding processed_transcript MGP_CASTEiJ_T0029102.1 MGP_CASTEiJ_G0017766.1 mouse_genomes_project 11 62289546 62316249 + MGP_CASTEiJ_P0029102 Trpv2 protein_coding protein_coding MGP_CASTEiJ_T0029103.1 MGP_CASTEiJ_G0017766.1 mouse_genomes_project 11 62295075 62316249 + Trpv2 protein_coding processed_transcript MGP_CASTEiJ_T0012298.1 MGP_CASTEiJ_G0010461.1 mouse_genomes_project 11 70274416 70274790 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032109.1 MGP_CASTEiJ_G0018511.1 mouse_genomes_project 11 104222117 104301336 - MGP_CASTEiJ_P0032109 Brca1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032110.1 MGP_CASTEiJ_G0018511.1 mouse_genomes_project 11 104222117 104301336 - MGP_CASTEiJ_P0032110 Brca1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032111.1 MGP_CASTEiJ_G0018511.1 mouse_genomes_project 11 104222117 104301336 - MGP_CASTEiJ_P0032111 Brca1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032112.1 MGP_CASTEiJ_G0018511.1 mouse_genomes_project 11 104233875 104301314 - MGP_CASTEiJ_P0032112 Brca1 protein_coding protein_coding MGP_CASTEiJ_T0032113.1 MGP_CASTEiJ_G0018511.1 mouse_genomes_project 11 104240971 104253841 - Brca1 protein_coding retained_intron MGP_CASTEiJ_T0032114.1 MGP_CASTEiJ_G0018511.1 mouse_genomes_project 11 104258135 104267826 - Brca1 protein_coding retained_intron MGP_CASTEiJ_T0032115.1 MGP_CASTEiJ_G0018511.1 mouse_genomes_project 11 104269565 104270231 - MGP_CASTEiJ_P0032115 Brca1 protein_coding protein_coding MGP_CASTEiJ_T0032116.1 MGP_CASTEiJ_G0018511.1 mouse_genomes_project 11 104269579 104270579 - Brca1 protein_coding processed_transcript MGP_CASTEiJ_T0032117.1 MGP_CASTEiJ_G0018511.1 mouse_genomes_project 11 104270879 104301390 - MGP_CASTEiJ_P0032117 Brca1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032118.1 MGP_CASTEiJ_G0018511.1 mouse_genomes_project 11 104277366 104301017 - MGP_CASTEiJ_P0032118 Brca1 protein_coding protein_coding MGP_CASTEiJ_T0028624.1 MGP_CASTEiJ_G0017651.1 mouse_genomes_project 11 56248437 56579751 + MGP_CASTEiJ_P0028624 Gria1 protein_coding protein_coding MGP_CASTEiJ_T0028625.1 MGP_CASTEiJ_G0017651.1 mouse_genomes_project 11 56248583 56579750 + MGP_CASTEiJ_P0028625 Gria1 protein_coding protein_coding MGP_CASTEiJ_T0028626.1 MGP_CASTEiJ_G0017651.1 mouse_genomes_project 11 56248661 56579756 + MGP_CASTEiJ_P0028626 Gria1 protein_coding protein_coding MGP_CASTEiJ_T0028627.1 MGP_CASTEiJ_G0017651.1 mouse_genomes_project 11 56400216 56559500 + MGP_CASTEiJ_P0028627 Gria1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028628.1 MGP_CASTEiJ_G0017651.1 mouse_genomes_project 11 56427785 56439084 + Gria1 protein_coding processed_transcript MGP_CASTEiJ_T0030000.1 MGP_CASTEiJ_G0017965.1 mouse_genomes_project 11 73615278 73642763 + MGP_CASTEiJ_P0030000 Shpk protein_coding protein_coding MGP_CASTEiJ_T0030001.1 MGP_CASTEiJ_G0017965.1 mouse_genomes_project 11 73615278 73642754 + MGP_CASTEiJ_P0030001 Shpk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0016521.1 MGP_CASTEiJ_G0014519.1 mouse_genomes_project 11 100699757 100707368 - 1700003D09Rik processed_transcript processed_transcript MGP_CASTEiJ_T0033030.1 MGP_CASTEiJ_G0018694.1 mouse_genomes_project 11 119374437 119375880 - MGP_CASTEiJ_P0033030 Nt5c protein_coding protein_coding MGP_CASTEiJ_T0033031.1 MGP_CASTEiJ_G0018694.1 mouse_genomes_project 11 119374437 119375833 - MGP_CASTEiJ_P0033031 Nt5c protein_coding protein_coding MGP_CASTEiJ_T0033032.1 MGP_CASTEiJ_G0018694.1 mouse_genomes_project 11 119374655 119375869 - Nt5c protein_coding retained_intron MGP_CASTEiJ_T0033033.1 MGP_CASTEiJ_G0018694.1 mouse_genomes_project 11 119374717 119375220 - Nt5c protein_coding retained_intron MGP_CASTEiJ_T0033034.1 MGP_CASTEiJ_G0018694.1 mouse_genomes_project 11 119374788 119375389 - Nt5c protein_coding retained_intron MGP_CASTEiJ_T0006185.1 MGP_CASTEiJ_G0005169.1 mouse_genomes_project 11 115325393 115328348 - lincRNA lincRNA MGP_CASTEiJ_T0032102.1 MGP_CASTEiJ_G0018508.1 mouse_genomes_project 11 104191905 104202266 + MGP_CASTEiJ_P0032102 Ifi35 protein_coding protein_coding MGP_CASTEiJ_T0032103.1 MGP_CASTEiJ_G0018508.1 mouse_genomes_project 11 104191942 104201697 + Ifi35 protein_coding retained_intron MGP_CASTEiJ_T0032104.1 MGP_CASTEiJ_G0018508.1 mouse_genomes_project 11 104192067 104202036 + MGP_CASTEiJ_P0032104 Ifi35 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033848.1 MGP_CASTEiJ_G0018838.1 mouse_genomes_project 11 125433048 125442944 - MGP_CASTEiJ_P0033848 Sectm1b protein_coding protein_coding MGP_CASTEiJ_T0033849.1 MGP_CASTEiJ_G0018838.1 mouse_genomes_project 11 125434121 125442913 - MGP_CASTEiJ_P0033849 Sectm1b protein_coding protein_coding MGP_CASTEiJ_T0033850.1 MGP_CASTEiJ_G0018838.1 mouse_genomes_project 11 125434126 125435963 - MGP_CASTEiJ_P0033850 Sectm1b protein_coding protein_coding MGP_CASTEiJ_T0033851.1 MGP_CASTEiJ_G0018838.1 mouse_genomes_project 11 125434172 125442920 - MGP_CASTEiJ_P0033851 Sectm1b protein_coding protein_coding MGP_CASTEiJ_T0033852.1 MGP_CASTEiJ_G0018838.1 mouse_genomes_project 11 125434547 125442830 - MGP_CASTEiJ_P0033852 Sectm1b protein_coding protein_coding MGP_CASTEiJ_T0033853.1 MGP_CASTEiJ_G0018838.1 mouse_genomes_project 11 125434999 125442678 - Sectm1b protein_coding retained_intron MGP_CASTEiJ_T0033854.1 MGP_CASTEiJ_G0018838.1 mouse_genomes_project 11 125435827 125436232 - Sectm1b protein_coding processed_transcript MGP_CASTEiJ_T0011466.1 MGP_CASTEiJ_G0009651.1 mouse_genomes_project 11 74412442 74413377 + MGP_CASTEiJ_P0011466 Olfr22-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0030346.1 MGP_CASTEiJ_G0018058.1 mouse_genomes_project 11 78173469 78176025 - MGP_CASTEiJ_P0030346 Gm10392 protein_coding protein_coding MGP_CASTEiJ_T0033390.1 MGP_CASTEiJ_G0018753.1 mouse_genomes_project 11 121914913 121916981 + MGP_CASTEiJ_P0033390 Tmc8 protein_coding protein_coding MGP_CASTEiJ_T0033391.1 MGP_CASTEiJ_G0018753.1 mouse_genomes_project 11 121915134 121925975 + MGP_CASTEiJ_P0033391 Tmc8 protein_coding protein_coding MGP_CASTEiJ_T0033392.1 MGP_CASTEiJ_G0018753.1 mouse_genomes_project 11 121915152 121926053 + MGP_CASTEiJ_P0033392 Tmc8 protein_coding protein_coding MGP_CASTEiJ_T0033393.1 MGP_CASTEiJ_G0018753.1 mouse_genomes_project 11 121915221 121925894 + MGP_CASTEiJ_P0033393 Tmc8 protein_coding protein_coding MGP_CASTEiJ_T0033394.1 MGP_CASTEiJ_G0018753.1 mouse_genomes_project 11 121915494 121926030 + MGP_CASTEiJ_P0033394 Tmc8 protein_coding protein_coding MGP_CASTEiJ_T0033395.1 MGP_CASTEiJ_G0018753.1 mouse_genomes_project 11 121924187 121925628 + Tmc8 protein_coding retained_intron MGP_CASTEiJ_T0099230.1 MGP_CASTEiJ_G0036143.1 mouse_genomes_project 11 39335138 39335294 - Gm24446 snRNA snRNA MGP_CASTEiJ_T0028372.1 MGP_CASTEiJ_G0017588.1 mouse_genomes_project 11 50548767 50557183 + MGP_CASTEiJ_P0028372 protein_coding protein_coding MGP_CASTEiJ_T0028373.1 MGP_CASTEiJ_G0017588.1 mouse_genomes_project 11 50548769 50557182 + MGP_CASTEiJ_P0028373 protein_coding protein_coding MGP_CASTEiJ_T0029226.1 MGP_CASTEiJ_G0017799.1 mouse_genomes_project 11 67268849 67319324 + MGP_CASTEiJ_P0029226 Myh13 protein_coding protein_coding MGP_CASTEiJ_T0029227.1 MGP_CASTEiJ_G0017799.1 mouse_genomes_project 11 67268971 67319324 + MGP_CASTEiJ_P0029227 Myh13 protein_coding protein_coding MGP_CASTEiJ_T0029228.1 MGP_CASTEiJ_G0017799.1 mouse_genomes_project 11 67274264 67319239 + MGP_CASTEiJ_P0029228 Myh13 protein_coding protein_coding MGP_CASTEiJ_T0029229.1 MGP_CASTEiJ_G0017799.1 mouse_genomes_project 11 67312541 67316904 + MGP_CASTEiJ_P0029229 Myh13 protein_coding protein_coding MGP_CASTEiJ_T0031323.1 MGP_CASTEiJ_G0018287.1 mouse_genomes_project 11 97212948 97218769 - MGP_CASTEiJ_P0031323 Dlx4 protein_coding protein_coding MGP_CASTEiJ_T0031324.1 MGP_CASTEiJ_G0018287.1 mouse_genomes_project 11 97216132 97218307 - Dlx4 protein_coding processed_transcript MGP_CASTEiJ_T0031790.1 MGP_CASTEiJ_G0018405.1 mouse_genomes_project 11 102066974 102075954 - MGP_CASTEiJ_P0031790 Krt39 protein_coding protein_coding MGP_CASTEiJ_T0031791.1 MGP_CASTEiJ_G0018405.1 mouse_genomes_project 11 102067484 102075874 - MGP_CASTEiJ_P0031791 Krt39 protein_coding protein_coding MGP_CASTEiJ_T0031047.1 MGP_CASTEiJ_G0018223.1 mouse_genomes_project 11 89355714 89366323 + MGP_CASTEiJ_P0031047 Mks1 protein_coding protein_coding MGP_CASTEiJ_T0031048.1 MGP_CASTEiJ_G0018223.1 mouse_genomes_project 11 89355726 89361832 + Mks1 protein_coding retained_intron MGP_CASTEiJ_T0031049.1 MGP_CASTEiJ_G0018223.1 mouse_genomes_project 11 89356178 89361832 + Mks1 protein_coding retained_intron MGP_CASTEiJ_T0031050.1 MGP_CASTEiJ_G0018223.1 mouse_genomes_project 11 89359071 89359806 + Mks1 protein_coding retained_intron MGP_CASTEiJ_T0031051.1 MGP_CASTEiJ_G0018223.1 mouse_genomes_project 11 89364452 89365781 + Mks1 protein_coding retained_intron MGP_CASTEiJ_T0016459.1 MGP_CASTEiJ_G0014485.1 mouse_genomes_project 11 57678625 57680077 + 1700047K16Rik processed_transcript processed_transcript MGP_CASTEiJ_T0032001.1 MGP_CASTEiJ_G0018485.1 mouse_genomes_project 11 103804375 103807982 - MGP_CASTEiJ_P0032001 Psmc3ip protein_coding protein_coding MGP_CASTEiJ_T0032002.1 MGP_CASTEiJ_G0018485.1 mouse_genomes_project 11 103804677 103807946 - Psmc3ip protein_coding retained_intron MGP_CASTEiJ_T0032003.1 MGP_CASTEiJ_G0018485.1 mouse_genomes_project 11 103804702 103806706 - Psmc3ip protein_coding retained_intron MGP_CASTEiJ_T0032004.1 MGP_CASTEiJ_G0018485.1 mouse_genomes_project 11 103805032 103807922 - MGP_CASTEiJ_P0032004 Psmc3ip protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0101998.1 MGP_CASTEiJ_G0038723.1 mouse_genomes_project 11 84876043 84876191 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0033915.1 MGP_CASTEiJ_G0018855.1 mouse_genomes_project 11 126086757 126129952 + MGP_CASTEiJ_P0033915 Metrnl protein_coding unknown_likely_coding MGP_CASTEiJ_T0033916.1 MGP_CASTEiJ_G0018855.1 mouse_genomes_project 11 126086838 126100305 + MGP_CASTEiJ_P0033916 Metrnl protein_coding protein_coding MGP_CASTEiJ_T0033917.1 MGP_CASTEiJ_G0018855.1 mouse_genomes_project 11 126086975 126100078 + MGP_CASTEiJ_P0033917 Metrnl protein_coding protein_coding MGP_CASTEiJ_T0033687.1 MGP_CASTEiJ_G0018809.1 mouse_genomes_project 11 124817960 124825303 + MGP_CASTEiJ_P0033687 Slc25a10 protein_coding protein_coding MGP_CASTEiJ_T0033688.1 MGP_CASTEiJ_G0018809.1 mouse_genomes_project 11 124818008 124824709 + Slc25a10 protein_coding processed_transcript MGP_CASTEiJ_T0033689.1 MGP_CASTEiJ_G0018809.1 mouse_genomes_project 11 124818029 124822044 + Slc25a10 protein_coding processed_transcript MGP_CASTEiJ_T0033690.1 MGP_CASTEiJ_G0018809.1 mouse_genomes_project 11 124818035 124823035 + Slc25a10 protein_coding processed_transcript MGP_CASTEiJ_T0033691.1 MGP_CASTEiJ_G0018809.1 mouse_genomes_project 11 124822229 124824082 + Slc25a10 protein_coding processed_transcript MGP_CASTEiJ_T0033692.1 MGP_CASTEiJ_G0018809.1 mouse_genomes_project 11 124823843 124824393 + Slc25a10 protein_coding processed_transcript MGP_CASTEiJ_T0003031.1 MGP_CASTEiJ_G0002824.1 mouse_genomes_project 11 27967663 27969387 + Gm29237 antisense antisense MGP_CASTEiJ_T0030077.1 MGP_CASTEiJ_G0018004.1 mouse_genomes_project 11 75153610 75206300 - Pafah1b1 protein_coding retained_intron MGP_CASTEiJ_T0030078.1 MGP_CASTEiJ_G0018004.1 mouse_genomes_project 11 75153610 75206635 - MGP_CASTEiJ_P0030078 Pafah1b1 protein_coding protein_coding MGP_CASTEiJ_T0030079.1 MGP_CASTEiJ_G0018004.1 mouse_genomes_project 11 75153611 75206283 - Pafah1b1 protein_coding retained_intron MGP_CASTEiJ_T0030080.1 MGP_CASTEiJ_G0018004.1 mouse_genomes_project 11 75153611 75205823 - MGP_CASTEiJ_P0030080 Pafah1b1 protein_coding protein_coding MGP_CASTEiJ_T0030081.1 MGP_CASTEiJ_G0018004.1 mouse_genomes_project 11 75157218 75206147 - MGP_CASTEiJ_P0030081 Pafah1b1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030082.1 MGP_CASTEiJ_G0018004.1 mouse_genomes_project 11 75169099 75205136 - MGP_CASTEiJ_P0030082 Pafah1b1 protein_coding protein_coding MGP_CASTEiJ_T0028844.1 MGP_CASTEiJ_G0017723.1 mouse_genomes_project 11 59730334 59741725 - MGP_CASTEiJ_P0028844 Srebf1 protein_coding protein_coding MGP_CASTEiJ_T0028845.1 MGP_CASTEiJ_G0017723.1 mouse_genomes_project 11 59730336 59751853 - MGP_CASTEiJ_P0028845 Srebf1 protein_coding protein_coding MGP_CASTEiJ_T0028846.1 MGP_CASTEiJ_G0017723.1 mouse_genomes_project 11 59731375 59732289 - Srebf1 protein_coding processed_transcript MGP_CASTEiJ_T0028847.1 MGP_CASTEiJ_G0017723.1 mouse_genomes_project 11 59731708 59741681 - MGP_CASTEiJ_P0028847 Srebf1 protein_coding protein_coding MGP_CASTEiJ_T0028848.1 MGP_CASTEiJ_G0017723.1 mouse_genomes_project 11 59732611 59733463 - Srebf1 protein_coding processed_transcript MGP_CASTEiJ_T0028849.1 MGP_CASTEiJ_G0017723.1 mouse_genomes_project 11 59732613 59733872 - Srebf1 protein_coding processed_transcript MGP_CASTEiJ_T0028850.1 MGP_CASTEiJ_G0017723.1 mouse_genomes_project 11 59733048 59735105 - Srebf1 protein_coding processed_transcript MGP_CASTEiJ_T0028851.1 MGP_CASTEiJ_G0017723.1 mouse_genomes_project 11 59733906 59734736 - Srebf1 protein_coding processed_transcript MGP_CASTEiJ_T0028852.1 MGP_CASTEiJ_G0017723.1 mouse_genomes_project 11 59734348 59735538 - Srebf1 protein_coding processed_transcript MGP_CASTEiJ_T0028853.1 MGP_CASTEiJ_G0017723.1 mouse_genomes_project 11 59735436 59737348 - Srebf1 protein_coding processed_transcript MGP_CASTEiJ_T0028854.1 MGP_CASTEiJ_G0017723.1 mouse_genomes_project 11 59737194 59741608 - Srebf1 protein_coding processed_transcript MGP_CASTEiJ_T0028855.1 MGP_CASTEiJ_G0017723.1 mouse_genomes_project 11 59738166 59753832 - Srebf1 protein_coding processed_transcript MGP_CASTEiJ_T0016519.1 MGP_CASTEiJ_G0014517.1 mouse_genomes_project 11 100338775 100344484 + Gm11629 processed_transcript processed_transcript MGP_CASTEiJ_T0027208.1 MGP_CASTEiJ_G0017311.1 mouse_genomes_project 11 1977159 1979321 + MGP_CASTEiJ_P0027208 Rasl10a protein_coding protein_coding MGP_CASTEiJ_T0027209.1 MGP_CASTEiJ_G0017311.1 mouse_genomes_project 11 1977901 1978998 + Rasl10a protein_coding processed_transcript MGP_CASTEiJ_T0030034.1 MGP_CASTEiJ_G0017984.1 mouse_genomes_project 11 74312808 74313747 - MGP_CASTEiJ_P0030034 Olfr393 protein_coding protein_coding MGP_CASTEiJ_T0003007.1 MGP_CASTEiJ_G0002806.1 mouse_genomes_project 11 1503371 1512008 - Gm11961 antisense antisense MGP_CASTEiJ_T0003008.1 MGP_CASTEiJ_G0002806.1 mouse_genomes_project 11 1509617 1514255 - Gm11961 antisense antisense MGP_CASTEiJ_T0032688.1 MGP_CASTEiJ_G0018619.1 mouse_genomes_project 11 109979364 110086234 - MGP_CASTEiJ_P0032688 Smurf2 protein_coding protein_coding MGP_CASTEiJ_T0032689.1 MGP_CASTEiJ_G0018619.1 mouse_genomes_project 11 109981319 110085794 - Smurf2 protein_coding processed_transcript MGP_CASTEiJ_T0032690.1 MGP_CASTEiJ_G0018619.1 mouse_genomes_project 11 109981319 110085989 - MGP_CASTEiJ_P0032690 Smurf2 protein_coding protein_coding MGP_CASTEiJ_T0032691.1 MGP_CASTEiJ_G0018619.1 mouse_genomes_project 11 109981907 110085878 - MGP_CASTEiJ_P0032691 Smurf2 protein_coding protein_coding MGP_CASTEiJ_T0032692.1 MGP_CASTEiJ_G0018619.1 mouse_genomes_project 11 109984741 109989051 - Smurf2 protein_coding processed_transcript MGP_CASTEiJ_T0032693.1 MGP_CASTEiJ_G0018619.1 mouse_genomes_project 11 109990628 109999344 - Smurf2 protein_coding processed_transcript MGP_CASTEiJ_T0006076.1 MGP_CASTEiJ_G0005087.1 mouse_genomes_project 11 50876175 51248629 - lincRNA lincRNA MGP_CASTEiJ_T0030534.1 MGP_CASTEiJ_G0018095.1 mouse_genomes_project 11 79320768 79330955 - MGP_CASTEiJ_P0030534 Tmem97 protein_coding protein_coding MGP_CASTEiJ_T0033502.1 MGP_CASTEiJ_G0018778.1 mouse_genomes_project 11 123360471 123453675 - MGP_CASTEiJ_P0033502 Tbc1d16 protein_coding protein_coding MGP_CASTEiJ_T0033503.1 MGP_CASTEiJ_G0018778.1 mouse_genomes_project 11 123366373 123453699 - MGP_CASTEiJ_P0033503 Tbc1d16 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033504.1 MGP_CASTEiJ_G0018778.1 mouse_genomes_project 11 123432189 123445437 - MGP_CASTEiJ_P0033504 Tbc1d16 protein_coding protein_coding MGP_CASTEiJ_T0028137.1 MGP_CASTEiJ_G0017528.1 mouse_genomes_project 11 47637104 47867978 + MGP_CASTEiJ_P0028137 Olfr56 protein_coding protein_coding MGP_CASTEiJ_T0028138.1 MGP_CASTEiJ_G0017528.1 mouse_genomes_project 11 47637104 47867978 + MGP_CASTEiJ_P0028138 Olfr56 protein_coding protein_coding MGP_CASTEiJ_T0028139.1 MGP_CASTEiJ_G0017528.1 mouse_genomes_project 11 47637104 47867978 + MGP_CASTEiJ_P0028139 Olfr56 protein_coding protein_coding MGP_CASTEiJ_T0028145.1 MGP_CASTEiJ_G0017528.1 mouse_genomes_project 11 47810026 47856632 + Olfr56 protein_coding retained_intron MGP_CASTEiJ_T0028147.1 MGP_CASTEiJ_G0017528.1 mouse_genomes_project 11 47810044 47867911 + MGP_CASTEiJ_P0028147 Olfr56 protein_coding protein_coding MGP_CASTEiJ_T0028150.1 MGP_CASTEiJ_G0017528.1 mouse_genomes_project 11 47848348 47867910 + MGP_CASTEiJ_P0028150 Olfr56 protein_coding protein_coding MGP_CASTEiJ_T0029877.1 MGP_CASTEiJ_G0017935.1 mouse_genomes_project 11 72378299 72387831 - MGP_CASTEiJ_P0029877 Aipl1 protein_coding protein_coding MGP_CASTEiJ_T0029878.1 MGP_CASTEiJ_G0017935.1 mouse_genomes_project 11 72379055 72387851 - MGP_CASTEiJ_P0029878 Aipl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029879.1 MGP_CASTEiJ_G0017935.1 mouse_genomes_project 11 72379286 72392604 - MGP_CASTEiJ_P0029879 Aipl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003038.1 MGP_CASTEiJ_G0002831.1 mouse_genomes_project 11 41651423 41655225 - Gm12144 antisense antisense MGP_CASTEiJ_T0003026.1 MGP_CASTEiJ_G0002820.1 mouse_genomes_project 11 21702066 21719522 - Gm12064 antisense antisense MGP_CASTEiJ_T0003171.1 MGP_CASTEiJ_G0002940.1 mouse_genomes_project 11 99532313 99536190 + Gm11592 antisense antisense MGP_CASTEiJ_T0098461.1 MGP_CASTEiJ_G0035392.1 mouse_genomes_project 11 68028511 68028637 + Gm26157 rRNA rRNA MGP_CASTEiJ_T0006020.1 MGP_CASTEiJ_G0005040.1 mouse_genomes_project 11 19975937 19976445 - lincRNA lincRNA MGP_CASTEiJ_T0033571.1 MGP_CASTEiJ_G0018789.1 mouse_genomes_project 11 124190107 124192388 + MGP_CASTEiJ_P0033571 Chmp6 protein_coding protein_coding MGP_CASTEiJ_T0033572.1 MGP_CASTEiJ_G0018789.1 mouse_genomes_project 11 124190113 124195016 + MGP_CASTEiJ_P0033572 Chmp6 protein_coding protein_coding MGP_CASTEiJ_T0033573.1 MGP_CASTEiJ_G0018789.1 mouse_genomes_project 11 124192115 124195336 + Chmp6 protein_coding retained_intron MGP_CASTEiJ_T0033574.1 MGP_CASTEiJ_G0018789.1 mouse_genomes_project 11 124193018 124194916 + Chmp6 protein_coding retained_intron MGP_CASTEiJ_T0003100.1 MGP_CASTEiJ_G0002885.1 mouse_genomes_project 11 67132184 67136378 - 9430073C21Rik antisense antisense MGP_CASTEiJ_T0012137.1 MGP_CASTEiJ_G0010300.1 mouse_genomes_project 11 9400112 9403022 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028328.1 MGP_CASTEiJ_G0017579.1 mouse_genomes_project 11 50006136 50006728 + MGP_CASTEiJ_P0028328 protein_coding protein_coding MGP_CASTEiJ_T0003110.1 MGP_CASTEiJ_G0002893.1 mouse_genomes_project 11 69467455 69468642 + Kdm6bos antisense antisense MGP_CASTEiJ_T0030131.1 MGP_CASTEiJ_G0018014.1 mouse_genomes_project 11 75723680 75802660 + MGP_CASTEiJ_P0030131 Rtn4rl1 protein_coding protein_coding MGP_CASTEiJ_T0031056.1 MGP_CASTEiJ_G0018227.1 mouse_genomes_project 11 89425624 89426708 - MGP_CASTEiJ_P0031056 Olfr464 protein_coding protein_coding MGP_CASTEiJ_T0031057.1 MGP_CASTEiJ_G0018227.1 mouse_genomes_project 11 89426269 89428219 - MGP_CASTEiJ_P0031057 Olfr464 protein_coding protein_coding MGP_CASTEiJ_T0030538.1 MGP_CASTEiJ_G0018098.1 mouse_genomes_project 11 79535276 79536500 - MGP_CASTEiJ_P0030538 Fam58b protein_coding protein_coding MGP_CASTEiJ_T0012229.1 MGP_CASTEiJ_G0010392.1 mouse_genomes_project 11 42995488 42996492 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029296.1 MGP_CASTEiJ_G0017815.1 mouse_genomes_project 11 68919961 68927173 + MGP_CASTEiJ_P0029296 Rnf222 protein_coding protein_coding MGP_CASTEiJ_T0003033.1 MGP_CASTEiJ_G0002826.1 mouse_genomes_project 11 31801390 31809932 + Gm12120 antisense antisense MGP_CASTEiJ_T0030870.1 MGP_CASTEiJ_G0018186.1 mouse_genomes_project 11 86272827 86277602 + Car4 protein_coding retained_intron MGP_CASTEiJ_T0030871.1 MGP_CASTEiJ_G0018186.1 mouse_genomes_project 11 86272829 86280887 + MGP_CASTEiJ_P0030871 Car4 protein_coding protein_coding MGP_CASTEiJ_T0030872.1 MGP_CASTEiJ_G0018186.1 mouse_genomes_project 11 86272852 86276963 + Car4 protein_coding processed_transcript MGP_CASTEiJ_T0030873.1 MGP_CASTEiJ_G0018186.1 mouse_genomes_project 11 86272866 86279406 + MGP_CASTEiJ_P0030873 Car4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030874.1 MGP_CASTEiJ_G0018186.1 mouse_genomes_project 11 86273147 86279073 + MGP_CASTEiJ_P0030874 Car4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030875.1 MGP_CASTEiJ_G0018186.1 mouse_genomes_project 11 86278295 86280767 + MGP_CASTEiJ_P0030875 Car4 protein_coding protein_coding MGP_CASTEiJ_T0032584.1 MGP_CASTEiJ_G0018595.1 mouse_genomes_project 11 109123791 109138157 + Dcaf7 protein_coding retained_intron MGP_CASTEiJ_T0032585.1 MGP_CASTEiJ_G0018595.1 mouse_genomes_project 11 109123937 109146120 + MGP_CASTEiJ_P0032585 Dcaf7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033635.1 MGP_CASTEiJ_G0018800.1 mouse_genomes_project 11 124674591 124684308 - Faap100 protein_coding retained_intron MGP_CASTEiJ_T0033636.1 MGP_CASTEiJ_G0018800.1 mouse_genomes_project 11 124675098 124684337 - MGP_CASTEiJ_P0033636 Faap100 protein_coding protein_coding MGP_CASTEiJ_T0033637.1 MGP_CASTEiJ_G0018800.1 mouse_genomes_project 11 124675417 124676429 - Faap100 protein_coding retained_intron MGP_CASTEiJ_T0033638.1 MGP_CASTEiJ_G0018800.1 mouse_genomes_project 11 124678478 124684345 - MGP_CASTEiJ_P0033638 Faap100 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033639.1 MGP_CASTEiJ_G0018800.1 mouse_genomes_project 11 124678504 124679701 - Faap100 protein_coding processed_transcript MGP_CASTEiJ_T0033640.1 MGP_CASTEiJ_G0018800.1 mouse_genomes_project 11 124678560 124684309 - Faap100 protein_coding retained_intron MGP_CASTEiJ_T0033641.1 MGP_CASTEiJ_G0018800.1 mouse_genomes_project 11 124681696 124684282 - Faap100 protein_coding processed_transcript MGP_CASTEiJ_T0033642.1 MGP_CASTEiJ_G0018800.1 mouse_genomes_project 11 124682513 124684047 - Faap100 protein_coding processed_transcript MGP_CASTEiJ_T0033643.1 MGP_CASTEiJ_G0018800.1 mouse_genomes_project 11 124682850 124684308 - Faap100 protein_coding processed_transcript MGP_CASTEiJ_T0012271.1 MGP_CASTEiJ_G0010434.1 mouse_genomes_project 11 58970277 58970582 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101730.1 MGP_CASTEiJ_G0038538.1 mouse_genomes_project 11 84185109 84199726 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0012172.1 MGP_CASTEiJ_G0010335.1 mouse_genomes_project 11 18967059 18967633 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027629.1 MGP_CASTEiJ_G0017402.1 mouse_genomes_project 11 20873127 21063565 + MGP_CASTEiJ_P0027629 protein_coding protein_coding MGP_CASTEiJ_T0027630.1 MGP_CASTEiJ_G0017402.1 mouse_genomes_project 11 20873148 21062749 + MGP_CASTEiJ_P0027630 protein_coding protein_coding MGP_CASTEiJ_T0027631.1 MGP_CASTEiJ_G0017402.1 mouse_genomes_project 11 20873174 21062257 + MGP_CASTEiJ_P0027631 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027632.1 MGP_CASTEiJ_G0017402.1 mouse_genomes_project 11 20873179 21062252 + MGP_CASTEiJ_P0027632 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027633.1 MGP_CASTEiJ_G0017402.1 mouse_genomes_project 11 20984901 20990640 + protein_coding processed_transcript MGP_CASTEiJ_T0027634.1 MGP_CASTEiJ_G0017402.1 mouse_genomes_project 11 20990042 21028746 + MGP_CASTEiJ_P0027634 protein_coding protein_coding MGP_CASTEiJ_T0027635.1 MGP_CASTEiJ_G0017402.1 mouse_genomes_project 11 21030942 21033903 + protein_coding processed_transcript MGP_CASTEiJ_T0027636.1 MGP_CASTEiJ_G0017402.1 mouse_genomes_project 11 21031081 21033616 + protein_coding processed_transcript MGP_CASTEiJ_T0027637.1 MGP_CASTEiJ_G0017402.1 mouse_genomes_project 11 21043216 21061372 + MGP_CASTEiJ_P0027637 protein_coding protein_coding MGP_CASTEiJ_T0027638.1 MGP_CASTEiJ_G0017402.1 mouse_genomes_project 11 21059816 21060331 + protein_coding processed_transcript MGP_CASTEiJ_T0010986.1 MGP_CASTEiJ_G0009174.1 mouse_genomes_project 11 111081151 111081438 + Gm23120 misc_RNA misc_RNA MGP_CASTEiJ_T0033016.1 MGP_CASTEiJ_G0018691.1 mouse_genomes_project 11 119319836 119327656 + MGP_CASTEiJ_P0033016 Trim80 protein_coding protein_coding MGP_CASTEiJ_T0012185.1 MGP_CASTEiJ_G0010348.1 mouse_genomes_project 11 24408169 24408638 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012352.1 MGP_CASTEiJ_G0010515.1 mouse_genomes_project 11 89887327 89887652 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029527.1 MGP_CASTEiJ_G0017870.1 mouse_genomes_project 11 69967449 69975648 - MGP_CASTEiJ_P0029527 Tnk1 protein_coding protein_coding MGP_CASTEiJ_T0029528.1 MGP_CASTEiJ_G0017870.1 mouse_genomes_project 11 69967655 69973546 - MGP_CASTEiJ_P0029528 Tnk1 protein_coding protein_coding MGP_CASTEiJ_T0029529.1 MGP_CASTEiJ_G0017870.1 mouse_genomes_project 11 69968511 69972066 - MGP_CASTEiJ_P0029529 Tnk1 protein_coding protein_coding MGP_CASTEiJ_T0029530.1 MGP_CASTEiJ_G0017870.1 mouse_genomes_project 11 69970951 69975648 - MGP_CASTEiJ_P0029530 Tnk1 protein_coding protein_coding MGP_CASTEiJ_T0029531.1 MGP_CASTEiJ_G0017870.1 mouse_genomes_project 11 69972044 69975626 - MGP_CASTEiJ_P0029531 Tnk1 protein_coding protein_coding MGP_CASTEiJ_T0030626.1 MGP_CASTEiJ_G0018119.1 mouse_genomes_project 11 81220963 81276534 + MGP_CASTEiJ_P0030626 Rhbdl3 protein_coding protein_coding MGP_CASTEiJ_T0030627.1 MGP_CASTEiJ_G0018119.1 mouse_genomes_project 11 81221153 81274326 + MGP_CASTEiJ_P0030627 Rhbdl3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030628.1 MGP_CASTEiJ_G0018119.1 mouse_genomes_project 11 81239745 81244215 + Rhbdl3 protein_coding retained_intron MGP_CASTEiJ_T0030629.1 MGP_CASTEiJ_G0018119.1 mouse_genomes_project 11 81267287 81274254 + Rhbdl3 protein_coding retained_intron MGP_CASTEiJ_T0027380.1 MGP_CASTEiJ_G0017345.1 mouse_genomes_project 11 3671274 3673259 - Wap protein_coding processed_transcript MGP_CASTEiJ_T0027381.1 MGP_CASTEiJ_G0017345.1 mouse_genomes_project 11 3671274 3674134 - MGP_CASTEiJ_P0027381 Wap protein_coding protein_coding MGP_CASTEiJ_T0027382.1 MGP_CASTEiJ_G0017345.1 mouse_genomes_project 11 3671331 3673248 - Wap protein_coding processed_transcript MGP_CASTEiJ_T0006149.1 MGP_CASTEiJ_G0005141.1 mouse_genomes_project 11 90340531 90342865 - Gm11493 lincRNA lincRNA MGP_CASTEiJ_T0028782.1 MGP_CASTEiJ_G0017708.1 mouse_genomes_project 11 58938024 58946470 + MGP_CASTEiJ_P0028782 Jmjd4 protein_coding protein_coding MGP_CASTEiJ_T0028783.1 MGP_CASTEiJ_G0017708.1 mouse_genomes_project 11 58938024 58946564 + MGP_CASTEiJ_P0028783 Jmjd4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028784.1 MGP_CASTEiJ_G0017708.1 mouse_genomes_project 11 58938024 58946470 + MGP_CASTEiJ_P0028784 Jmjd4 protein_coding protein_coding MGP_CASTEiJ_T0028785.1 MGP_CASTEiJ_G0017708.1 mouse_genomes_project 11 58938100 58944091 + Jmjd4 protein_coding retained_intron MGP_CASTEiJ_T0028786.1 MGP_CASTEiJ_G0017708.1 mouse_genomes_project 11 58938190 58943603 + MGP_CASTEiJ_P0028786 Jmjd4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029367.1 MGP_CASTEiJ_G0017830.1 mouse_genomes_project 11 69174733 69199322 + MGP_CASTEiJ_P0029367 Aloxe3 protein_coding protein_coding MGP_CASTEiJ_T0029368.1 MGP_CASTEiJ_G0017830.1 mouse_genomes_project 11 69175052 69184092 + Aloxe3 protein_coding retained_intron MGP_CASTEiJ_T0029369.1 MGP_CASTEiJ_G0017830.1 mouse_genomes_project 11 69175242 69183165 + MGP_CASTEiJ_P0029369 Aloxe3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029370.1 MGP_CASTEiJ_G0017830.1 mouse_genomes_project 11 69182782 69183747 + Aloxe3 protein_coding retained_intron MGP_CASTEiJ_T0029371.1 MGP_CASTEiJ_G0017830.1 mouse_genomes_project 11 69182957 69191476 + Aloxe3 protein_coding retained_intron MGP_CASTEiJ_T0029372.1 MGP_CASTEiJ_G0017830.1 mouse_genomes_project 11 69184123 69191554 + Aloxe3 protein_coding retained_intron MGP_CASTEiJ_T0027616.1 MGP_CASTEiJ_G0017400.1 mouse_genomes_project 11 20575994 20590092 + MGP_CASTEiJ_P0027616 Fam161a protein_coding protein_coding MGP_CASTEiJ_T0027617.1 MGP_CASTEiJ_G0017400.1 mouse_genomes_project 11 20576829 20600522 + MGP_CASTEiJ_P0027617 Fam161a protein_coding protein_coding MGP_CASTEiJ_T0027618.1 MGP_CASTEiJ_G0017400.1 mouse_genomes_project 11 20576928 20593581 + MGP_CASTEiJ_P0027618 Fam161a protein_coding protein_coding MGP_CASTEiJ_T0027619.1 MGP_CASTEiJ_G0017400.1 mouse_genomes_project 11 20583309 20593571 + MGP_CASTEiJ_P0027619 Fam161a protein_coding protein_coding MGP_CASTEiJ_T0027620.1 MGP_CASTEiJ_G0017400.1 mouse_genomes_project 11 20590325 20601798 + MGP_CASTEiJ_P0027620 Fam161a protein_coding protein_coding MGP_CASTEiJ_T0027621.1 MGP_CASTEiJ_G0017400.1 mouse_genomes_project 11 20590411 20593570 + MGP_CASTEiJ_P0027621 Fam161a protein_coding protein_coding MGP_CASTEiJ_T0016440.1 MGP_CASTEiJ_G0014474.1 mouse_genomes_project 11 21071146 21071912 + 1700030C12Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016441.1 MGP_CASTEiJ_G0014474.1 mouse_genomes_project 11 21071150 21072934 + 1700030C12Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016442.1 MGP_CASTEiJ_G0014474.1 mouse_genomes_project 11 21071176 21072457 + 1700030C12Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016443.1 MGP_CASTEiJ_G0014474.1 mouse_genomes_project 11 21072115 21072917 + 1700030C12Rik processed_transcript processed_transcript MGP_CASTEiJ_T0102019.1 MGP_CASTEiJ_G0038744.1 mouse_genomes_project 11 126253281 126257720 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0028359.1 MGP_CASTEiJ_G0017584.1 mouse_genomes_project 11 50494255 50500976 - MGP_CASTEiJ_P0028359 Hnrnpab protein_coding protein_coding MGP_CASTEiJ_T0028360.1 MGP_CASTEiJ_G0017584.1 mouse_genomes_project 11 50495024 50500725 - MGP_CASTEiJ_P0028360 Hnrnpab protein_coding unknown_likely_coding MGP_CASTEiJ_T0028361.1 MGP_CASTEiJ_G0017584.1 mouse_genomes_project 11 50495026 50500976 - MGP_CASTEiJ_P0028361 Hnrnpab protein_coding protein_coding MGP_CASTEiJ_T0028362.1 MGP_CASTEiJ_G0017584.1 mouse_genomes_project 11 50495330 50500976 - MGP_CASTEiJ_P0028362 Hnrnpab protein_coding protein_coding MGP_CASTEiJ_T0029216.1 MGP_CASTEiJ_G0017796.1 mouse_genomes_project 11 67137246 67164605 + MGP_CASTEiJ_P0029216 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029217.1 MGP_CASTEiJ_G0017796.1 mouse_genomes_project 11 67137281 67139355 + MGP_CASTEiJ_P0029217 protein_coding protein_coding MGP_CASTEiJ_T0028302.1 MGP_CASTEiJ_G0017569.1 mouse_genomes_project 11 49709497 49721676 - MGP_CASTEiJ_P0028302 Zfp2 protein_coding protein_coding MGP_CASTEiJ_T0028303.1 MGP_CASTEiJ_G0017569.1 mouse_genomes_project 11 49709497 49727086 - MGP_CASTEiJ_P0028303 Zfp2 protein_coding protein_coding MGP_CASTEiJ_T0028304.1 MGP_CASTEiJ_G0017569.1 mouse_genomes_project 11 49709845 49727109 - MGP_CASTEiJ_P0028304 Zfp2 protein_coding protein_coding MGP_CASTEiJ_T0028305.1 MGP_CASTEiJ_G0017569.1 mouse_genomes_project 11 49712010 49727137 - MGP_CASTEiJ_P0028305 Zfp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028306.1 MGP_CASTEiJ_G0017569.1 mouse_genomes_project 11 49712037 49727075 - Zfp2 protein_coding processed_transcript MGP_CASTEiJ_T0028307.1 MGP_CASTEiJ_G0017569.1 mouse_genomes_project 11 49715961 49727096 - Zfp2 protein_coding processed_transcript MGP_CASTEiJ_T0028308.1 MGP_CASTEiJ_G0017569.1 mouse_genomes_project 11 49716830 49727078 - Zfp2 protein_coding processed_transcript MGP_CASTEiJ_T0009489.1 MGP_CASTEiJ_G0007677.1 mouse_genomes_project 11 99056815 99056888 + Mir152 miRNA miRNA MGP_CASTEiJ_T0012309.1 MGP_CASTEiJ_G0010472.1 mouse_genomes_project 11 73806991 73807378 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029772.1 MGP_CASTEiJ_G0017917.1 mouse_genomes_project 11 70852530 70856504 - MGP_CASTEiJ_P0029772 Pfn1 protein_coding protein_coding MGP_CASTEiJ_T0029773.1 MGP_CASTEiJ_G0017917.1 mouse_genomes_project 11 70853792 70856481 - MGP_CASTEiJ_P0029773 Pfn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029774.1 MGP_CASTEiJ_G0017917.1 mouse_genomes_project 11 70854466 70856468 - Pfn1 protein_coding retained_intron MGP_CASTEiJ_T0029775.1 MGP_CASTEiJ_G0017917.1 mouse_genomes_project 11 70854476 70856458 - MGP_CASTEiJ_P0029775 Pfn1 protein_coding protein_coding MGP_CASTEiJ_T0010977.1 MGP_CASTEiJ_G0009165.1 mouse_genomes_project 11 86638051 86638335 - Gm22587 misc_RNA misc_RNA MGP_CASTEiJ_T0030469.1 MGP_CASTEiJ_G0018080.1 mouse_genomes_project 11 79046365 79049258 + MGP_CASTEiJ_P0030469 BC030499 protein_coding protein_coding MGP_CASTEiJ_T0030470.1 MGP_CASTEiJ_G0018080.1 mouse_genomes_project 11 79046416 79050856 + BC030499 protein_coding retained_intron MGP_CASTEiJ_T0030471.1 MGP_CASTEiJ_G0018080.1 mouse_genomes_project 11 79046418 79049331 + BC030499 protein_coding retained_intron MGP_CASTEiJ_T0030472.1 MGP_CASTEiJ_G0018080.1 mouse_genomes_project 11 79046453 79049346 + BC030499 protein_coding retained_intron MGP_CASTEiJ_T0030473.1 MGP_CASTEiJ_G0018080.1 mouse_genomes_project 11 79047002 79052328 + MGP_CASTEiJ_P0030473 BC030499 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030474.1 MGP_CASTEiJ_G0018080.1 mouse_genomes_project 11 79047080 79047680 + BC030499 protein_coding retained_intron MGP_CASTEiJ_T0030475.1 MGP_CASTEiJ_G0018080.1 mouse_genomes_project 11 79049319 79052319 + BC030499 protein_coding retained_intron MGP_CASTEiJ_T0030275.1 MGP_CASTEiJ_G0018044.1 mouse_genomes_project 11 77301833 77321447 + MGP_CASTEiJ_P0030275 Tusc5 protein_coding protein_coding MGP_CASTEiJ_T0033380.1 MGP_CASTEiJ_G0018752.1 mouse_genomes_project 11 121898816 121912489 - MGP_CASTEiJ_P0033380 Tmc6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033381.1 MGP_CASTEiJ_G0018752.1 mouse_genomes_project 11 121898816 121913480 - MGP_CASTEiJ_P0033381 Tmc6 protein_coding protein_coding MGP_CASTEiJ_T0033382.1 MGP_CASTEiJ_G0018752.1 mouse_genomes_project 11 121898888 121901906 - Tmc6 protein_coding retained_intron MGP_CASTEiJ_T0033383.1 MGP_CASTEiJ_G0018752.1 mouse_genomes_project 11 121898975 121913512 - MGP_CASTEiJ_P0033383 Tmc6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033384.1 MGP_CASTEiJ_G0018752.1 mouse_genomes_project 11 121902906 121905863 - MGP_CASTEiJ_P0033384 Tmc6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033385.1 MGP_CASTEiJ_G0018752.1 mouse_genomes_project 11 121908197 121913462 - MGP_CASTEiJ_P0033385 Tmc6 protein_coding protein_coding MGP_CASTEiJ_T0033386.1 MGP_CASTEiJ_G0018752.1 mouse_genomes_project 11 121908557 121912491 - MGP_CASTEiJ_P0033386 Tmc6 protein_coding protein_coding MGP_CASTEiJ_T0033387.1 MGP_CASTEiJ_G0018752.1 mouse_genomes_project 11 121911582 121913785 - MGP_CASTEiJ_P0033387 Tmc6 protein_coding protein_coding MGP_CASTEiJ_T0033388.1 MGP_CASTEiJ_G0018752.1 mouse_genomes_project 11 121911778 121915036 - MGP_CASTEiJ_P0033388 Tmc6 protein_coding protein_coding MGP_CASTEiJ_T0033389.1 MGP_CASTEiJ_G0018752.1 mouse_genomes_project 11 121912032 121913499 - MGP_CASTEiJ_P0033389 Tmc6 protein_coding protein_coding MGP_CASTEiJ_T0100417.1 MGP_CASTEiJ_G0037330.1 mouse_genomes_project 11 8672133 8672262 - Gm26458 snoRNA snoRNA MGP_CASTEiJ_T0030206.1 MGP_CASTEiJ_G0018029.1 mouse_genomes_project 11 76300208 76337101 + MGP_CASTEiJ_P0030206 Ywhae protein_coding protein_coding MGP_CASTEiJ_T0030207.1 MGP_CASTEiJ_G0018029.1 mouse_genomes_project 11 76300252 76335878 + MGP_CASTEiJ_P0030207 Ywhae protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030208.1 MGP_CASTEiJ_G0018029.1 mouse_genomes_project 11 76300300 76328349 + Ywhae protein_coding retained_intron MGP_CASTEiJ_T0030209.1 MGP_CASTEiJ_G0018029.1 mouse_genomes_project 11 76300487 76328105 + MGP_CASTEiJ_P0030209 Ywhae protein_coding protein_coding MGP_CASTEiJ_T0030210.1 MGP_CASTEiJ_G0018029.1 mouse_genomes_project 11 76319837 76330566 + Ywhae protein_coding retained_intron MGP_CASTEiJ_T0028309.1 MGP_CASTEiJ_G0017570.1 mouse_genomes_project 11 49728183 49743917 - MGP_CASTEiJ_P0028309 Zfp354b protein_coding unknown_likely_coding MGP_CASTEiJ_T0028310.1 MGP_CASTEiJ_G0017570.1 mouse_genomes_project 11 49732788 49743957 - MGP_CASTEiJ_P0028310 Zfp354b protein_coding protein_coding MGP_CASTEiJ_T0028311.1 MGP_CASTEiJ_G0017570.1 mouse_genomes_project 11 49740912 49742976 - Zfp354b protein_coding processed_transcript MGP_CASTEiJ_T0012342.1 MGP_CASTEiJ_G0010505.1 mouse_genomes_project 11 86439798 86441702 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033789.1 MGP_CASTEiJ_G0018827.1 mouse_genomes_project 11 125078327 125081357 + MGP_CASTEiJ_P0033789 Rac3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033790.1 MGP_CASTEiJ_G0018827.1 mouse_genomes_project 11 125078353 125080387 + MGP_CASTEiJ_P0033790 Rac3 protein_coding protein_coding MGP_CASTEiJ_T0033791.1 MGP_CASTEiJ_G0018827.1 mouse_genomes_project 11 125078794 125080346 + Rac3 protein_coding processed_transcript MGP_CASTEiJ_T0032095.1 MGP_CASTEiJ_G0018506.1 mouse_genomes_project 11 104165974 104175420 + MGP_CASTEiJ_P0032095 Rundc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032096.1 MGP_CASTEiJ_G0018506.1 mouse_genomes_project 11 104165980 104176686 + MGP_CASTEiJ_P0032096 Rundc1 protein_coding protein_coding MGP_CASTEiJ_T0029705.1 MGP_CASTEiJ_G0017903.1 mouse_genomes_project 11 70619402 70621225 + MGP_CASTEiJ_P0029705 Med11 protein_coding protein_coding MGP_CASTEiJ_T0029706.1 MGP_CASTEiJ_G0017903.1 mouse_genomes_project 11 70619402 70620738 + MGP_CASTEiJ_P0029706 Med11 protein_coding protein_coding MGP_CASTEiJ_T0029707.1 MGP_CASTEiJ_G0017903.1 mouse_genomes_project 11 70619415 70621062 + Med11 protein_coding retained_intron MGP_CASTEiJ_T0028914.1 MGP_CASTEiJ_G0017736.1 mouse_genomes_project 11 60361952 60391637 - MGP_CASTEiJ_P0028914 Shmt1 protein_coding protein_coding MGP_CASTEiJ_T0028915.1 MGP_CASTEiJ_G0017736.1 mouse_genomes_project 11 60362099 60396116 - MGP_CASTEiJ_P0028915 Shmt1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028916.1 MGP_CASTEiJ_G0017736.1 mouse_genomes_project 11 60362748 60376460 - Shmt1 protein_coding processed_transcript MGP_CASTEiJ_T0028917.1 MGP_CASTEiJ_G0017736.1 mouse_genomes_project 11 60362991 60387368 - MGP_CASTEiJ_P0028917 Shmt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028918.1 MGP_CASTEiJ_G0017736.1 mouse_genomes_project 11 60362991 60387368 - MGP_CASTEiJ_P0028918 Shmt1 protein_coding protein_coding MGP_CASTEiJ_T0028919.1 MGP_CASTEiJ_G0017736.1 mouse_genomes_project 11 60362991 60387368 - MGP_CASTEiJ_P0028919 Shmt1 protein_coding protein_coding MGP_CASTEiJ_T0028920.1 MGP_CASTEiJ_G0017736.1 mouse_genomes_project 11 60363095 60369972 - Shmt1 protein_coding retained_intron MGP_CASTEiJ_T0028921.1 MGP_CASTEiJ_G0017736.1 mouse_genomes_project 11 60363443 60367021 - Shmt1 protein_coding retained_intron MGP_CASTEiJ_T0028922.1 MGP_CASTEiJ_G0017736.1 mouse_genomes_project 11 60366796 60374910 - Shmt1 protein_coding retained_intron MGP_CASTEiJ_T0028923.1 MGP_CASTEiJ_G0017736.1 mouse_genomes_project 11 60374301 60391463 - Shmt1 protein_coding retained_intron MGP_CASTEiJ_T0028924.1 MGP_CASTEiJ_G0017736.1 mouse_genomes_project 11 60375708 60379699 - Shmt1 protein_coding processed_transcript MGP_CASTEiJ_T0028925.1 MGP_CASTEiJ_G0017736.1 mouse_genomes_project 11 60381378 60392095 - Shmt1 protein_coding processed_transcript MGP_CASTEiJ_T0032252.1 MGP_CASTEiJ_G0018533.1 mouse_genomes_project 11 105084046 105096420 + MGP_CASTEiJ_P0032252 Asb16 protein_coding protein_coding MGP_CASTEiJ_T0003073.1 MGP_CASTEiJ_G0002863.1 mouse_genomes_project 11 58855274 58859723 + Gm15755 antisense antisense MGP_CASTEiJ_T0012173.1 MGP_CASTEiJ_G0010336.1 mouse_genomes_project 11 18970882 18971213 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027386.1 MGP_CASTEiJ_G0017347.1 mouse_genomes_project 11 3866479 3868537 - Gm11983 protein_coding translated_processed_pseudogene MGP_CASTEiJ_T0027387.1 MGP_CASTEiJ_G0017347.1 mouse_genomes_project 11 3867700 3868008 - MGP_CASTEiJ_P0027387 Gm11983 protein_coding protein_coding MGP_CASTEiJ_T0100472.1 MGP_CASTEiJ_G0037385.1 mouse_genomes_project 11 101201686 101201790 - Gm22059 snoRNA snoRNA MGP_CASTEiJ_T0031835.1 MGP_CASTEiJ_G0018446.1 mouse_genomes_project 11 102746531 102750770 - MGP_CASTEiJ_P0031835 Krt13 protein_coding protein_coding MGP_CASTEiJ_T0031836.1 MGP_CASTEiJ_G0018446.1 mouse_genomes_project 11 102747104 102748042 - Krt13 protein_coding retained_intron MGP_CASTEiJ_T0031837.1 MGP_CASTEiJ_G0018446.1 mouse_genomes_project 11 102748352 102749782 - Krt13 protein_coding processed_transcript MGP_CASTEiJ_T0099221.1 MGP_CASTEiJ_G0036134.1 mouse_genomes_project 11 21052603 21052709 - Gm22753 snRNA snRNA MGP_CASTEiJ_T0027910.1 MGP_CASTEiJ_G0017464.1 mouse_genomes_project 11 31626226 31663270 - MGP_CASTEiJ_P0027910 Gabrp protein_coding protein_coding MGP_CASTEiJ_T0027911.1 MGP_CASTEiJ_G0017464.1 mouse_genomes_project 11 31653147 31663272 - MGP_CASTEiJ_P0027911 Gabrp protein_coding protein_coding MGP_CASTEiJ_T0028219.1 MGP_CASTEiJ_G0017554.1 mouse_genomes_project 11 48885540 48925603 + MGP_CASTEiJ_P0028219 Tbc1d9b protein_coding unknown_likely_coding MGP_CASTEiJ_T0028220.1 MGP_CASTEiJ_G0017554.1 mouse_genomes_project 11 48885601 48926157 + MGP_CASTEiJ_P0028220 Tbc1d9b protein_coding protein_coding MGP_CASTEiJ_T0028221.1 MGP_CASTEiJ_G0017554.1 mouse_genomes_project 11 48885601 48926929 + MGP_CASTEiJ_P0028221 Tbc1d9b protein_coding protein_coding MGP_CASTEiJ_T0028222.1 MGP_CASTEiJ_G0017554.1 mouse_genomes_project 11 48885607 48895060 + Tbc1d9b protein_coding processed_transcript MGP_CASTEiJ_T0028223.1 MGP_CASTEiJ_G0017554.1 mouse_genomes_project 11 48890033 48895170 + Tbc1d9b protein_coding processed_transcript MGP_CASTEiJ_T0028224.1 MGP_CASTEiJ_G0017554.1 mouse_genomes_project 11 48899905 48904704 + Tbc1d9b protein_coding processed_transcript MGP_CASTEiJ_T0028225.1 MGP_CASTEiJ_G0017554.1 mouse_genomes_project 11 48901294 48905956 + Tbc1d9b protein_coding processed_transcript MGP_CASTEiJ_T0028226.1 MGP_CASTEiJ_G0017554.1 mouse_genomes_project 11 48902648 48904463 + Tbc1d9b protein_coding processed_transcript MGP_CASTEiJ_T0028227.1 MGP_CASTEiJ_G0017554.1 mouse_genomes_project 11 48916250 48918698 + Tbc1d9b protein_coding processed_transcript MGP_CASTEiJ_T0032983.1 MGP_CASTEiJ_G0018685.1 mouse_genomes_project 11 119208644 119220768 + MGP_CASTEiJ_P0032983 Otop3 protein_coding protein_coding MGP_CASTEiJ_T0032984.1 MGP_CASTEiJ_G0018685.1 mouse_genomes_project 11 119208647 119220767 + MGP_CASTEiJ_P0032984 Otop3 protein_coding protein_coding MGP_CASTEiJ_T0028950.1 MGP_CASTEiJ_G0017743.1 mouse_genomes_project 11 60759618 60790277 - MGP_CASTEiJ_P0028950 Usp22 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028951.1 MGP_CASTEiJ_G0017743.1 mouse_genomes_project 11 60765313 60790425 - MGP_CASTEiJ_P0028951 Usp22 protein_coding protein_coding MGP_CASTEiJ_T0028952.1 MGP_CASTEiJ_G0017743.1 mouse_genomes_project 11 60767537 60770914 - Usp22 protein_coding retained_intron MGP_CASTEiJ_T0028953.1 MGP_CASTEiJ_G0017743.1 mouse_genomes_project 11 60769232 60772899 - Usp22 protein_coding retained_intron MGP_CASTEiJ_T0028954.1 MGP_CASTEiJ_G0017743.1 mouse_genomes_project 11 60774914 60781776 - MGP_CASTEiJ_P0028954 Usp22 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028955.1 MGP_CASTEiJ_G0017743.1 mouse_genomes_project 11 60776291 60790399 - Usp22 protein_coding retained_intron MGP_CASTEiJ_T0016514.1 MGP_CASTEiJ_G0014513.1 mouse_genomes_project 11 99251154 99256892 - Gm11532 processed_transcript processed_transcript MGP_CASTEiJ_T0010984.1 MGP_CASTEiJ_G0009172.1 mouse_genomes_project 11 105306013 105306264 - Gm23563 misc_RNA misc_RNA MGP_CASTEiJ_T0030964.1 MGP_CASTEiJ_G0018205.1 mouse_genomes_project 11 88380532 88437897 - MGP_CASTEiJ_P0030964 protein_coding protein_coding MGP_CASTEiJ_T0010970.1 MGP_CASTEiJ_G0009158.1 mouse_genomes_project 11 52790692 52790999 + Gm22275 misc_RNA misc_RNA MGP_CASTEiJ_T0100459.1 MGP_CASTEiJ_G0037372.1 mouse_genomes_project 11 78351473 78351605 - Gm23132 snoRNA snoRNA MGP_CASTEiJ_T0031799.1 MGP_CASTEiJ_G0018412.1 mouse_genomes_project 11 102145702 102146295 - MGP_CASTEiJ_P0031799 Krtap1-4 protein_coding protein_coding MGP_CASTEiJ_T0006158.1 MGP_CASTEiJ_G0005148.1 mouse_genomes_project 11 97731377 97738529 + Gm11528 lincRNA lincRNA MGP_CASTEiJ_T0029220.1 MGP_CASTEiJ_G0017798.1 mouse_genomes_project 11 67218798 67255777 + MGP_CASTEiJ_P0029220 protein_coding protein_coding MGP_CASTEiJ_T0029221.1 MGP_CASTEiJ_G0017798.1 mouse_genomes_project 11 67218889 67255774 + MGP_CASTEiJ_P0029221 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029222.1 MGP_CASTEiJ_G0017798.1 mouse_genomes_project 11 67218891 67255774 + MGP_CASTEiJ_P0029222 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029223.1 MGP_CASTEiJ_G0017798.1 mouse_genomes_project 11 67219092 67240455 + protein_coding retained_intron MGP_CASTEiJ_T0029224.1 MGP_CASTEiJ_G0017798.1 mouse_genomes_project 11 67219092 67224630 + MGP_CASTEiJ_P0029224 protein_coding protein_coding MGP_CASTEiJ_T0029225.1 MGP_CASTEiJ_G0017798.1 mouse_genomes_project 11 67221635 67237394 + protein_coding retained_intron MGP_CASTEiJ_T0016415.1 MGP_CASTEiJ_G0014463.1 mouse_genomes_project 11 362583 363254 + Gm11947 processed_transcript processed_transcript MGP_CASTEiJ_T0012330.1 MGP_CASTEiJ_G0010493.1 mouse_genomes_project 11 80769594 80771183 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012219.1 MGP_CASTEiJ_G0010382.1 mouse_genomes_project 11 38761903 38762415 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030865.1 MGP_CASTEiJ_G0018185.1 mouse_genomes_project 11 86222511 86227953 - MGP_CASTEiJ_P0030865 Znhit3 protein_coding protein_coding MGP_CASTEiJ_T0030866.1 MGP_CASTEiJ_G0018185.1 mouse_genomes_project 11 86222852 86227936 - Znhit3 protein_coding processed_transcript MGP_CASTEiJ_T0030867.1 MGP_CASTEiJ_G0018185.1 mouse_genomes_project 11 86223032 86227953 - Znhit3 protein_coding processed_transcript MGP_CASTEiJ_T0030868.1 MGP_CASTEiJ_G0018185.1 mouse_genomes_project 11 86223068 86227892 - Znhit3 protein_coding processed_transcript MGP_CASTEiJ_T0030869.1 MGP_CASTEiJ_G0018185.1 mouse_genomes_project 11 86227024 86227911 - Znhit3 protein_coding retained_intron MGP_CASTEiJ_T0027936.1 MGP_CASTEiJ_G0017473.1 mouse_genomes_project 11 33150757 33765108 + MGP_CASTEiJ_P0027936 Slit3 protein_coding protein_coding MGP_CASTEiJ_T0027937.1 MGP_CASTEiJ_G0017473.1 mouse_genomes_project 11 33199750 33268429 + Slit3 protein_coding processed_transcript MGP_CASTEiJ_T0027938.1 MGP_CASTEiJ_G0017473.1 mouse_genomes_project 11 33205915 33552255 + Slit3 protein_coding processed_transcript MGP_CASTEiJ_T0027939.1 MGP_CASTEiJ_G0017473.1 mouse_genomes_project 11 33588006 33658705 + Slit3 protein_coding processed_transcript MGP_CASTEiJ_T0033878.1 MGP_CASTEiJ_G0018846.1 mouse_genomes_project 11 125626827 125643867 + MGP_CASTEiJ_P0033878 Narf protein_coding unknown_likely_coding MGP_CASTEiJ_T0033879.1 MGP_CASTEiJ_G0018846.1 mouse_genomes_project 11 125634054 125634965 + Narf protein_coding retained_intron MGP_CASTEiJ_T0033880.1 MGP_CASTEiJ_G0018846.1 mouse_genomes_project 11 125634536 125635320 + Narf protein_coding retained_intron MGP_CASTEiJ_T0030025.1 MGP_CASTEiJ_G0017978.1 mouse_genomes_project 11 74069973 74074615 + MGP_CASTEiJ_P0030025 Olfr384 protein_coding protein_coding MGP_CASTEiJ_T0032942.1 MGP_CASTEiJ_G0018673.1 mouse_genomes_project 11 118863200 118871642 - MGP_CASTEiJ_P0032942 Cd300ld2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032341.1 MGP_CASTEiJ_G0018545.1 mouse_genomes_project 11 105465645 105471307 + MGP_CASTEiJ_P0032341 Fzd2 protein_coding protein_coding MGP_CASTEiJ_T0028021.1 MGP_CASTEiJ_G0017495.1 mouse_genomes_project 11 42120560 42145967 + MGP_CASTEiJ_P0028021 Pwwp2a protein_coding protein_coding MGP_CASTEiJ_T0028022.1 MGP_CASTEiJ_G0017495.1 mouse_genomes_project 11 42120620 42159493 + MGP_CASTEiJ_P0028022 Pwwp2a protein_coding protein_coding MGP_CASTEiJ_T0028023.1 MGP_CASTEiJ_G0017495.1 mouse_genomes_project 11 42120630 42145976 + MGP_CASTEiJ_P0028023 Pwwp2a protein_coding unknown_likely_coding MGP_CASTEiJ_T0028024.1 MGP_CASTEiJ_G0017495.1 mouse_genomes_project 11 42121110 42122625 + Pwwp2a protein_coding processed_transcript MGP_CASTEiJ_T0028025.1 MGP_CASTEiJ_G0017495.1 mouse_genomes_project 11 42122713 42145967 + MGP_CASTEiJ_P0028025 Pwwp2a protein_coding protein_coding MGP_CASTEiJ_T0028026.1 MGP_CASTEiJ_G0017495.1 mouse_genomes_project 11 42143827 42160568 + Pwwp2a protein_coding processed_transcript MGP_CASTEiJ_T0028027.1 MGP_CASTEiJ_G0017495.1 mouse_genomes_project 11 42156740 42159914 + Pwwp2a protein_coding processed_transcript MGP_CASTEiJ_T0003203.1 MGP_CASTEiJ_G0002967.1 mouse_genomes_project 11 108238287 108241985 - 1700052K11Rik antisense antisense MGP_CASTEiJ_T0003125.1 MGP_CASTEiJ_G0002906.1 mouse_genomes_project 11 80470890 80487050 - Rab11fip4os1 antisense antisense MGP_CASTEiJ_T0031952.1 MGP_CASTEiJ_G0018477.1 mouse_genomes_project 11 103548500 103577839 + MGP_CASTEiJ_P0031952 Stat5a protein_coding protein_coding MGP_CASTEiJ_T0031953.1 MGP_CASTEiJ_G0018477.1 mouse_genomes_project 11 103548559 103551559 + MGP_CASTEiJ_P0031953 Stat5a protein_coding protein_coding MGP_CASTEiJ_T0031954.1 MGP_CASTEiJ_G0018477.1 mouse_genomes_project 11 103548706 103576759 + MGP_CASTEiJ_P0031954 Stat5a protein_coding unknown_likely_coding MGP_CASTEiJ_T0031955.1 MGP_CASTEiJ_G0018477.1 mouse_genomes_project 11 103548806 103577839 + MGP_CASTEiJ_P0031955 Stat5a protein_coding protein_coding MGP_CASTEiJ_T0031956.1 MGP_CASTEiJ_G0018477.1 mouse_genomes_project 11 103550155 103553038 + MGP_CASTEiJ_P0031956 Stat5a protein_coding protein_coding MGP_CASTEiJ_T0031957.1 MGP_CASTEiJ_G0018477.1 mouse_genomes_project 11 103550294 103577838 + MGP_CASTEiJ_P0031957 Stat5a protein_coding protein_coding MGP_CASTEiJ_T0031958.1 MGP_CASTEiJ_G0018477.1 mouse_genomes_project 11 103550295 103568796 + Stat5a protein_coding processed_transcript MGP_CASTEiJ_T0031959.1 MGP_CASTEiJ_G0018477.1 mouse_genomes_project 11 103550344 103577831 + MGP_CASTEiJ_P0031959 Stat5a protein_coding unknown_likely_coding MGP_CASTEiJ_T0031960.1 MGP_CASTEiJ_G0018477.1 mouse_genomes_project 11 103564931 103577831 + MGP_CASTEiJ_P0031960 Stat5a protein_coding unknown_likely_coding MGP_CASTEiJ_T0031961.1 MGP_CASTEiJ_G0018477.1 mouse_genomes_project 11 103570444 103571589 + Stat5a protein_coding processed_transcript MGP_CASTEiJ_T0032891.1 MGP_CASTEiJ_G0018661.1 mouse_genomes_project 11 118459578 118469327 + MGP_CASTEiJ_P0032891 Rpl38 protein_coding protein_coding MGP_CASTEiJ_T0032892.1 MGP_CASTEiJ_G0018661.1 mouse_genomes_project 11 118459602 118469327 + MGP_CASTEiJ_P0032892 Rpl38 protein_coding protein_coding MGP_CASTEiJ_T0032893.1 MGP_CASTEiJ_G0018661.1 mouse_genomes_project 11 118459646 118469335 + MGP_CASTEiJ_P0032893 Rpl38 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032894.1 MGP_CASTEiJ_G0018661.1 mouse_genomes_project 11 118459663 118469327 + MGP_CASTEiJ_P0032894 Rpl38 protein_coding protein_coding MGP_CASTEiJ_T0032895.1 MGP_CASTEiJ_G0018661.1 mouse_genomes_project 11 118459680 118469327 + MGP_CASTEiJ_P0032895 Rpl38 protein_coding protein_coding MGP_CASTEiJ_T0032896.1 MGP_CASTEiJ_G0018661.1 mouse_genomes_project 11 118459807 118469335 + MGP_CASTEiJ_P0032896 Rpl38 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028768.1 MGP_CASTEiJ_G0017704.1 mouse_genomes_project 11 58719602 58764482 - MGP_CASTEiJ_P0028768 Wnt3a protein_coding protein_coding MGP_CASTEiJ_T0099225.1 MGP_CASTEiJ_G0036138.1 mouse_genomes_project 11 27141293 27141419 + Gm23109 snRNA snRNA MGP_CASTEiJ_T0028382.1 MGP_CASTEiJ_G0017591.1 mouse_genomes_project 11 50672304 50702595 + MGP_CASTEiJ_P0028382 Sar1b protein_coding protein_coding MGP_CASTEiJ_T0028383.1 MGP_CASTEiJ_G0017591.1 mouse_genomes_project 11 50672311 50693674 + Sar1b protein_coding processed_transcript MGP_CASTEiJ_T0016497.1 MGP_CASTEiJ_G0014505.1 mouse_genomes_project 11 86135853 86137534 + 4930502E09Rik processed_transcript processed_transcript MGP_CASTEiJ_T0032214.1 MGP_CASTEiJ_G0018529.1 mouse_genomes_project 11 104968942 104994732 - MGP_CASTEiJ_P0032214 Lsm12 protein_coding protein_coding MGP_CASTEiJ_T0032215.1 MGP_CASTEiJ_G0018529.1 mouse_genomes_project 11 104968942 104994799 - MGP_CASTEiJ_P0032215 Lsm12 protein_coding protein_coding MGP_CASTEiJ_T0032216.1 MGP_CASTEiJ_G0018529.1 mouse_genomes_project 11 104969027 104994709 - MGP_CASTEiJ_P0032216 Lsm12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032217.1 MGP_CASTEiJ_G0018529.1 mouse_genomes_project 11 104970395 104992435 - Lsm12 protein_coding processed_transcript MGP_CASTEiJ_T0032218.1 MGP_CASTEiJ_G0018529.1 mouse_genomes_project 11 104970559 104994760 - Lsm12 protein_coding processed_transcript MGP_CASTEiJ_T0032219.1 MGP_CASTEiJ_G0018529.1 mouse_genomes_project 11 104973568 104994764 - Lsm12 protein_coding processed_transcript MGP_CASTEiJ_T0031780.1 MGP_CASTEiJ_G0018396.1 mouse_genomes_project 11 101813630 101819339 - MGP_CASTEiJ_P0031780 Krt24 protein_coding protein_coding MGP_CASTEiJ_T0031906.1 MGP_CASTEiJ_G0018466.1 mouse_genomes_project 11 103257907 103298316 - MGP_CASTEiJ_P0031906 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031907.1 MGP_CASTEiJ_G0018466.1 mouse_genomes_project 11 103257915 103259886 - protein_coding processed_transcript MGP_CASTEiJ_T0031908.1 MGP_CASTEiJ_G0018466.1 mouse_genomes_project 11 103258361 103260591 - protein_coding processed_transcript MGP_CASTEiJ_T0031909.1 MGP_CASTEiJ_G0018466.1 mouse_genomes_project 11 103259439 103266133 - protein_coding processed_transcript MGP_CASTEiJ_T0031910.1 MGP_CASTEiJ_G0018466.1 mouse_genomes_project 11 103265991 103297755 - MGP_CASTEiJ_P0031910 protein_coding protein_coding MGP_CASTEiJ_T0031911.1 MGP_CASTEiJ_G0018466.1 mouse_genomes_project 11 103265998 103297776 - protein_coding processed_transcript MGP_CASTEiJ_T0031912.1 MGP_CASTEiJ_G0018466.1 mouse_genomes_project 11 103266123 103272037 - protein_coding processed_transcript MGP_CASTEiJ_T0031913.1 MGP_CASTEiJ_G0018466.1 mouse_genomes_project 11 103268068 103289810 - MGP_CASTEiJ_P0031913 protein_coding protein_coding MGP_CASTEiJ_T0031914.1 MGP_CASTEiJ_G0018466.1 mouse_genomes_project 11 103272755 103297758 - protein_coding processed_transcript MGP_CASTEiJ_T0031915.1 MGP_CASTEiJ_G0018466.1 mouse_genomes_project 11 103273663 103297838 - protein_coding processed_transcript MGP_CASTEiJ_T0101515.1 MGP_CASTEiJ_G0038410.1 mouse_genomes_project 11 18979600 18980293 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0031278.1 MGP_CASTEiJ_G0018275.1 mouse_genomes_project 11 96584781 96591051 + MGP_CASTEiJ_P0031278 Mrpl27 protein_coding protein_coding MGP_CASTEiJ_T0031279.1 MGP_CASTEiJ_G0018275.1 mouse_genomes_project 11 96584790 96590880 + Mrpl27 protein_coding processed_transcript MGP_CASTEiJ_T0031280.1 MGP_CASTEiJ_G0018275.1 mouse_genomes_project 11 96585025 96590582 + Mrpl27 protein_coding processed_transcript MGP_CASTEiJ_T0031281.1 MGP_CASTEiJ_G0018275.1 mouse_genomes_project 11 96585045 96590678 + Mrpl27 protein_coding processed_transcript MGP_CASTEiJ_T0031300.1 MGP_CASTEiJ_G0018281.1 mouse_genomes_project 11 97022144 97023008 + MGP_CASTEiJ_P0031300 Hils1 protein_coding protein_coding MGP_CASTEiJ_T0012187.1 MGP_CASTEiJ_G0010350.1 mouse_genomes_project 11 24554502 24555026 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030800.1 MGP_CASTEiJ_G0018173.1 mouse_genomes_project 11 85220040 85306378 + MGP_CASTEiJ_P0030800 Synrg protein_coding protein_coding MGP_CASTEiJ_T0030801.1 MGP_CASTEiJ_G0018173.1 mouse_genomes_project 11 85220040 85302785 + MGP_CASTEiJ_P0030801 Synrg protein_coding protein_coding MGP_CASTEiJ_T0030802.1 MGP_CASTEiJ_G0018173.1 mouse_genomes_project 11 85220088 85302759 + MGP_CASTEiJ_P0030802 Synrg protein_coding protein_coding MGP_CASTEiJ_T0030803.1 MGP_CASTEiJ_G0018173.1 mouse_genomes_project 11 85220088 85302759 + MGP_CASTEiJ_P0030803 Synrg protein_coding protein_coding MGP_CASTEiJ_T0030804.1 MGP_CASTEiJ_G0018173.1 mouse_genomes_project 11 85237493 85246066 + Synrg protein_coding processed_transcript MGP_CASTEiJ_T0030805.1 MGP_CASTEiJ_G0018173.1 mouse_genomes_project 11 85238339 85247138 + MGP_CASTEiJ_P0030805 Synrg protein_coding protein_coding MGP_CASTEiJ_T0030806.1 MGP_CASTEiJ_G0018173.1 mouse_genomes_project 11 85246065 85247554 + Synrg protein_coding retained_intron MGP_CASTEiJ_T0030807.1 MGP_CASTEiJ_G0018173.1 mouse_genomes_project 11 85280028 85303242 + Synrg protein_coding retained_intron MGP_CASTEiJ_T0030808.1 MGP_CASTEiJ_G0018173.1 mouse_genomes_project 11 85287316 85301841 + Synrg protein_coding retained_intron MGP_CASTEiJ_T0003130.1 MGP_CASTEiJ_G0002910.1 mouse_genomes_project 11 82038230 82049247 + Gm11417 antisense antisense MGP_CASTEiJ_T0030514.1 MGP_CASTEiJ_G0018090.1 mouse_genomes_project 11 79281874 79283504 + MGP_CASTEiJ_P0030514 Sebox protein_coding protein_coding MGP_CASTEiJ_T0030515.1 MGP_CASTEiJ_G0018090.1 mouse_genomes_project 11 79281926 79283497 + MGP_CASTEiJ_P0030515 Sebox protein_coding protein_coding MGP_CASTEiJ_T0012340.1 MGP_CASTEiJ_G0010503.1 mouse_genomes_project 11 86397760 86398287 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029667.1 MGP_CASTEiJ_G0017895.1 mouse_genomes_project 11 70381519 70384125 - MGP_CASTEiJ_P0029667 0610010K14Rik protein_coding protein_coding MGP_CASTEiJ_T0029669.1 MGP_CASTEiJ_G0017895.1 mouse_genomes_project 11 70381527 70384174 - MGP_CASTEiJ_P0029669 0610010K14Rik protein_coding protein_coding MGP_CASTEiJ_T0029670.1 MGP_CASTEiJ_G0017895.1 mouse_genomes_project 11 70381527 70382518 - MGP_CASTEiJ_P0029670 0610010K14Rik protein_coding protein_coding MGP_CASTEiJ_T0029671.1 MGP_CASTEiJ_G0017895.1 mouse_genomes_project 11 70381527 70384235 - MGP_CASTEiJ_P0029671 0610010K14Rik protein_coding protein_coding MGP_CASTEiJ_T0029672.1 MGP_CASTEiJ_G0017895.1 mouse_genomes_project 11 70381527 70384225 - MGP_CASTEiJ_P0029672 0610010K14Rik protein_coding protein_coding MGP_CASTEiJ_T0029674.1 MGP_CASTEiJ_G0017895.1 mouse_genomes_project 11 70381683 70383999 - MGP_CASTEiJ_P0029674 0610010K14Rik protein_coding protein_coding MGP_CASTEiJ_T0029675.1 MGP_CASTEiJ_G0017895.1 mouse_genomes_project 11 70381692 70383810 - 0610010K14Rik protein_coding processed_transcript MGP_CASTEiJ_T0029676.1 MGP_CASTEiJ_G0017895.1 mouse_genomes_project 11 70381700 70384084 - 0610010K14Rik protein_coding processed_transcript MGP_CASTEiJ_T0029677.1 MGP_CASTEiJ_G0017895.1 mouse_genomes_project 11 70382057 70384182 - MGP_CASTEiJ_P0029677 0610010K14Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029678.1 MGP_CASTEiJ_G0017895.1 mouse_genomes_project 11 70382774 70384233 - 0610010K14Rik protein_coding retained_intron MGP_CASTEiJ_T0032428.1 MGP_CASTEiJ_G0018563.1 mouse_genomes_project 11 106095213 106128847 + MGP_CASTEiJ_P0032428 Fmnl1 protein_coding protein_coding MGP_CASTEiJ_T0032429.1 MGP_CASTEiJ_G0018563.1 mouse_genomes_project 11 106095419 106128841 + MGP_CASTEiJ_P0032429 Fmnl1 protein_coding protein_coding MGP_CASTEiJ_T0032430.1 MGP_CASTEiJ_G0018563.1 mouse_genomes_project 11 106095419 106126157 + MGP_CASTEiJ_P0032430 Fmnl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032431.1 MGP_CASTEiJ_G0018563.1 mouse_genomes_project 11 106095469 106128854 + MGP_CASTEiJ_P0032431 Fmnl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032432.1 MGP_CASTEiJ_G0018563.1 mouse_genomes_project 11 106095473 106128854 + MGP_CASTEiJ_P0032432 Fmnl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032433.1 MGP_CASTEiJ_G0018563.1 mouse_genomes_project 11 106095473 106128854 + MGP_CASTEiJ_P0032433 Fmnl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032434.1 MGP_CASTEiJ_G0018563.1 mouse_genomes_project 11 106095473 106128854 + MGP_CASTEiJ_P0032434 Fmnl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032435.1 MGP_CASTEiJ_G0018563.1 mouse_genomes_project 11 106104858 106115986 + Fmnl1 protein_coding processed_transcript MGP_CASTEiJ_T0032436.1 MGP_CASTEiJ_G0018563.1 mouse_genomes_project 11 106110857 106116276 + Fmnl1 protein_coding processed_transcript MGP_CASTEiJ_T0032437.1 MGP_CASTEiJ_G0018563.1 mouse_genomes_project 11 106117934 106128841 + Fmnl1 protein_coding retained_intron MGP_CASTEiJ_T0032438.1 MGP_CASTEiJ_G0018563.1 mouse_genomes_project 11 106122422 106123498 + MGP_CASTEiJ_P0032438 Fmnl1 protein_coding protein_coding MGP_CASTEiJ_T0031207.1 MGP_CASTEiJ_G0018262.1 mouse_genomes_project 11 96173154 96177184 + MGP_CASTEiJ_P0031207 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031208.1 MGP_CASTEiJ_G0018262.1 mouse_genomes_project 11 96173187 96177184 + MGP_CASTEiJ_P0031208 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031209.1 MGP_CASTEiJ_G0018262.1 mouse_genomes_project 11 96175852 96177184 + MGP_CASTEiJ_P0031209 protein_coding protein_coding MGP_CASTEiJ_T0006154.1 MGP_CASTEiJ_G0005146.1 mouse_genomes_project 11 92514847 92610279 + 4930405D11Rik lincRNA lincRNA MGP_CASTEiJ_T0006155.1 MGP_CASTEiJ_G0005146.1 mouse_genomes_project 11 92597484 92610223 + 4930405D11Rik lincRNA lincRNA MGP_CASTEiJ_T0006156.1 MGP_CASTEiJ_G0005146.1 mouse_genomes_project 11 92597509 92610129 + 4930405D11Rik lincRNA lincRNA MGP_CASTEiJ_T0033704.1 MGP_CASTEiJ_G0018814.1 mouse_genomes_project 11 124917227 124921467 - MGP_CASTEiJ_P0033704 Arhgdia protein_coding protein_coding MGP_CASTEiJ_T0033705.1 MGP_CASTEiJ_G0018814.1 mouse_genomes_project 11 124917232 124920499 - MGP_CASTEiJ_P0033705 Arhgdia protein_coding protein_coding MGP_CASTEiJ_T0027570.1 MGP_CASTEiJ_G0017390.1 mouse_genomes_project 11 19040421 19136938 + MGP_CASTEiJ_P0027570 Wdpcp protein_coding protein_coding MGP_CASTEiJ_T0027571.1 MGP_CASTEiJ_G0017390.1 mouse_genomes_project 11 19040421 19400572 + MGP_CASTEiJ_P0027571 Wdpcp protein_coding protein_coding MGP_CASTEiJ_T0027572.1 MGP_CASTEiJ_G0017390.1 mouse_genomes_project 11 19040491 19173582 + Wdpcp protein_coding processed_transcript MGP_CASTEiJ_T0027573.1 MGP_CASTEiJ_G0017390.1 mouse_genomes_project 11 19165593 19194173 + Wdpcp protein_coding processed_transcript MGP_CASTEiJ_T0027574.1 MGP_CASTEiJ_G0017390.1 mouse_genomes_project 11 19171140 19240860 + Wdpcp protein_coding processed_transcript MGP_CASTEiJ_T0027575.1 MGP_CASTEiJ_G0017390.1 mouse_genomes_project 11 19306219 19311982 + Wdpcp protein_coding processed_transcript MGP_CASTEiJ_T0030944.1 MGP_CASTEiJ_G0018201.1 mouse_genomes_project 11 88010348 88117568 - MGP_CASTEiJ_P0030944 Vmp1 protein_coding protein_coding MGP_CASTEiJ_T0030945.1 MGP_CASTEiJ_G0018201.1 mouse_genomes_project 11 88011413 88040596 - Vmp1 protein_coding processed_transcript MGP_CASTEiJ_T0030946.1 MGP_CASTEiJ_G0018201.1 mouse_genomes_project 11 88011503 88013535 - Vmp1 protein_coding processed_transcript MGP_CASTEiJ_T0030947.1 MGP_CASTEiJ_G0018201.1 mouse_genomes_project 11 88011752 88013422 - Vmp1 protein_coding processed_transcript MGP_CASTEiJ_T0030948.1 MGP_CASTEiJ_G0018201.1 mouse_genomes_project 11 88011755 88040628 - Vmp1 protein_coding processed_transcript MGP_CASTEiJ_T0030949.1 MGP_CASTEiJ_G0018201.1 mouse_genomes_project 11 88075611 88096937 - Vmp1 protein_coding processed_transcript MGP_CASTEiJ_T0030950.1 MGP_CASTEiJ_G0018201.1 mouse_genomes_project 11 88097910 88117553 - Vmp1 protein_coding processed_transcript MGP_CASTEiJ_T0030951.1 MGP_CASTEiJ_G0018201.1 mouse_genomes_project 11 88098010 88104720 - MGP_CASTEiJ_P0030951 Vmp1 protein_coding protein_coding MGP_CASTEiJ_T0028686.1 MGP_CASTEiJ_G0017669.1 mouse_genomes_project 11 57791165 57796081 + MGP_CASTEiJ_P0028686 1810065E05Rik protein_coding protein_coding MGP_CASTEiJ_T0032177.1 MGP_CASTEiJ_G0018521.1 mouse_genomes_project 11 104777660 104785622 + MGP_CASTEiJ_P0032177 1700006E09Rik protein_coding protein_coding MGP_CASTEiJ_T0032178.1 MGP_CASTEiJ_G0018521.1 mouse_genomes_project 11 104777665 104784212 + MGP_CASTEiJ_P0032178 1700006E09Rik protein_coding protein_coding MGP_CASTEiJ_T0032179.1 MGP_CASTEiJ_G0018521.1 mouse_genomes_project 11 104780437 104785630 + MGP_CASTEiJ_P0032179 1700006E09Rik protein_coding protein_coding MGP_CASTEiJ_T0006047.1 MGP_CASTEiJ_G0005061.1 mouse_genomes_project 11 29753338 29759027 + Gm12107 lincRNA lincRNA MGP_CASTEiJ_T0030442.1 MGP_CASTEiJ_G0018074.1 mouse_genomes_project 11 78923044 78925196 - protein_coding retained_intron MGP_CASTEiJ_T0030443.1 MGP_CASTEiJ_G0018074.1 mouse_genomes_project 11 78923047 78923743 - protein_coding retained_intron MGP_CASTEiJ_T0030444.1 MGP_CASTEiJ_G0018074.1 mouse_genomes_project 11 78923047 78925703 - MGP_CASTEiJ_P0030444 protein_coding protein_coding MGP_CASTEiJ_T0030039.1 MGP_CASTEiJ_G0017988.1 mouse_genomes_project 11 74422888 74423979 + MGP_CASTEiJ_P0030039 Olfr397 protein_coding protein_coding MGP_CASTEiJ_T0032366.1 MGP_CASTEiJ_G0018550.1 mouse_genomes_project 11 105737908 105740101 + MGP_CASTEiJ_P0032366 Higd1b protein_coding protein_coding MGP_CASTEiJ_T0032368.1 MGP_CASTEiJ_G0018550.1 mouse_genomes_project 11 105738355 105740101 + MGP_CASTEiJ_P0032368 Higd1b protein_coding protein_coding MGP_CASTEiJ_T0032369.1 MGP_CASTEiJ_G0018550.1 mouse_genomes_project 11 105738505 105740101 + MGP_CASTEiJ_P0032369 Higd1b protein_coding protein_coding MGP_CASTEiJ_T0012125.1 MGP_CASTEiJ_G0010288.1 mouse_genomes_project 11 3724891 3725877 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030748.1 MGP_CASTEiJ_G0018154.1 mouse_genomes_project 11 84468410 84503370 + MGP_CASTEiJ_P0030748 Ap2b1 protein_coding protein_coding MGP_CASTEiJ_T0030749.1 MGP_CASTEiJ_G0018154.1 mouse_genomes_project 11 84472850 84576633 + MGP_CASTEiJ_P0030749 Ap2b1 protein_coding protein_coding MGP_CASTEiJ_T0030750.1 MGP_CASTEiJ_G0018154.1 mouse_genomes_project 11 84473070 84514824 + Ap2b1 protein_coding retained_intron MGP_CASTEiJ_T0030751.1 MGP_CASTEiJ_G0018154.1 mouse_genomes_project 11 84473101 84570211 + MGP_CASTEiJ_P0030751 Ap2b1 protein_coding protein_coding MGP_CASTEiJ_T0030752.1 MGP_CASTEiJ_G0018154.1 mouse_genomes_project 11 84473141 84574611 + MGP_CASTEiJ_P0030752 Ap2b1 protein_coding protein_coding MGP_CASTEiJ_T0030753.1 MGP_CASTEiJ_G0018154.1 mouse_genomes_project 11 84473313 84486740 + MGP_CASTEiJ_P0030753 Ap2b1 protein_coding protein_coding MGP_CASTEiJ_T0030754.1 MGP_CASTEiJ_G0018154.1 mouse_genomes_project 11 84478592 84574243 + MGP_CASTEiJ_P0030754 Ap2b1 protein_coding protein_coding MGP_CASTEiJ_T0012426.1 MGP_CASTEiJ_G0010589.1 mouse_genomes_project 11 123920423 123920868 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009480.1 MGP_CASTEiJ_G0007668.1 mouse_genomes_project 11 88010549 88010641 - Mir21a miRNA miRNA MGP_CASTEiJ_T0033261.1 MGP_CASTEiJ_G0018733.1 mouse_genomes_project 11 120473595 120501056 - Prpsap1 protein_coding processed_transcript MGP_CASTEiJ_T0033262.1 MGP_CASTEiJ_G0018733.1 mouse_genomes_project 11 120473595 120501090 - MGP_CASTEiJ_P0033262 Prpsap1 protein_coding protein_coding MGP_CASTEiJ_T0033263.1 MGP_CASTEiJ_G0018733.1 mouse_genomes_project 11 120474050 120482330 - Prpsap1 protein_coding processed_transcript MGP_CASTEiJ_T0033264.1 MGP_CASTEiJ_G0018733.1 mouse_genomes_project 11 120474127 120475994 - Prpsap1 protein_coding processed_transcript MGP_CASTEiJ_T0033265.1 MGP_CASTEiJ_G0018733.1 mouse_genomes_project 11 120474151 120481748 - Prpsap1 protein_coding processed_transcript MGP_CASTEiJ_T0033266.1 MGP_CASTEiJ_G0018733.1 mouse_genomes_project 11 120482070 120504936 - MGP_CASTEiJ_P0033266 Prpsap1 protein_coding protein_coding MGP_CASTEiJ_T0033267.1 MGP_CASTEiJ_G0018733.1 mouse_genomes_project 11 120482301 120501031 - Prpsap1 protein_coding processed_transcript MGP_CASTEiJ_T0033268.1 MGP_CASTEiJ_G0018733.1 mouse_genomes_project 11 120482543 120501077 - MGP_CASTEiJ_P0033268 Prpsap1 protein_coding protein_coding MGP_CASTEiJ_T0033269.1 MGP_CASTEiJ_G0018733.1 mouse_genomes_project 11 120493503 120501069 - Prpsap1 protein_coding processed_transcript MGP_CASTEiJ_T0028028.1 MGP_CASTEiJ_G0017496.1 mouse_genomes_project 11 42168379 42186505 - MGP_CASTEiJ_P0028028 Ttc1 protein_coding protein_coding MGP_CASTEiJ_T0028029.1 MGP_CASTEiJ_G0017496.1 mouse_genomes_project 11 42168872 42186479 - MGP_CASTEiJ_P0028029 Ttc1 protein_coding protein_coding MGP_CASTEiJ_T0028030.1 MGP_CASTEiJ_G0017496.1 mouse_genomes_project 11 42183835 42186489 - Ttc1 protein_coding processed_transcript MGP_CASTEiJ_T0027159.1 MGP_CASTEiJ_G0017301.1 mouse_genomes_project 11 1521894 1568551 + MGP_CASTEiJ_P0027159 Ascc2 protein_coding protein_coding MGP_CASTEiJ_T0027160.1 MGP_CASTEiJ_G0017301.1 mouse_genomes_project 11 1521894 1570863 + MGP_CASTEiJ_P0027160 Ascc2 protein_coding protein_coding MGP_CASTEiJ_T0003249.1 MGP_CASTEiJ_G0003004.1 mouse_genomes_project 11 124531810 124532699 - Gm11772 antisense antisense MGP_CASTEiJ_T0000801.1 MGP_CASTEiJ_G0000741.1 mouse_genomes_project 11 13347422 13348058 + TEC TEC MGP_CASTEiJ_T0028598.1 MGP_CASTEiJ_G0017643.1 mouse_genomes_project 11 54337320 54367340 - MGP_CASTEiJ_P0028598 Slc36a2 protein_coding protein_coding MGP_CASTEiJ_T0028599.1 MGP_CASTEiJ_G0017643.1 mouse_genomes_project 11 54348233 54367340 - Slc36a2 protein_coding processed_transcript MGP_CASTEiJ_T0031432.1 MGP_CASTEiJ_G0018319.1 mouse_genomes_project 11 98966407 98976380 - MGP_CASTEiJ_P0031432 Snx11 protein_coding protein_coding MGP_CASTEiJ_T0031433.1 MGP_CASTEiJ_G0018319.1 mouse_genomes_project 11 98966729 98976408 - MGP_CASTEiJ_P0031433 Snx11 protein_coding protein_coding MGP_CASTEiJ_T0031434.1 MGP_CASTEiJ_G0018319.1 mouse_genomes_project 11 98968742 98976341 - MGP_CASTEiJ_P0031434 Snx11 protein_coding protein_coding MGP_CASTEiJ_T0031435.1 MGP_CASTEiJ_G0018319.1 mouse_genomes_project 11 98968949 98969902 - Snx11 protein_coding processed_transcript MGP_CASTEiJ_T0031436.1 MGP_CASTEiJ_G0018319.1 mouse_genomes_project 11 98971396 98973490 - Snx11 protein_coding processed_transcript MGP_CASTEiJ_T0031437.1 MGP_CASTEiJ_G0018319.1 mouse_genomes_project 11 98975148 98976369 - Snx11 protein_coding processed_transcript MGP_CASTEiJ_T0032851.1 MGP_CASTEiJ_G0018652.1 mouse_genomes_project 11 116386379 116391596 + MGP_CASTEiJ_P0032851 Sox9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030089.1 MGP_CASTEiJ_G0018006.1 mouse_genomes_project 11 75332269 75348556 + MGP_CASTEiJ_P0030089 Mnt protein_coding protein_coding MGP_CASTEiJ_T0030090.1 MGP_CASTEiJ_G0018006.1 mouse_genomes_project 11 75332637 75348529 + MGP_CASTEiJ_P0030090 Mnt protein_coding unknown_likely_coding MGP_CASTEiJ_T0030091.1 MGP_CASTEiJ_G0018006.1 mouse_genomes_project 11 75337605 75339003 + Mnt protein_coding retained_intron MGP_CASTEiJ_T0030092.1 MGP_CASTEiJ_G0018006.1 mouse_genomes_project 11 75338747 75346606 + MGP_CASTEiJ_P0030092 Mnt protein_coding protein_coding MGP_CASTEiJ_T0029151.1 MGP_CASTEiJ_G0017779.1 mouse_genomes_project 11 63755995 63895367 - MGP_CASTEiJ_P0029151 Cox10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029152.1 MGP_CASTEiJ_G0017779.1 mouse_genomes_project 11 63768336 63895469 - MGP_CASTEiJ_P0029152 Cox10 protein_coding protein_coding MGP_CASTEiJ_T0029153.1 MGP_CASTEiJ_G0017779.1 mouse_genomes_project 11 63885700 63895471 - Cox10 protein_coding processed_transcript MGP_CASTEiJ_T0012165.1 MGP_CASTEiJ_G0010328.1 mouse_genomes_project 11 18150587 18151117 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028911.1 MGP_CASTEiJ_G0017735.1 mouse_genomes_project 11 60351495 60355039 + MGP_CASTEiJ_P0028911 Smcr8 protein_coding protein_coding MGP_CASTEiJ_T0028912.1 MGP_CASTEiJ_G0017735.1 mouse_genomes_project 11 60351496 60362136 + MGP_CASTEiJ_P0028912 Smcr8 protein_coding protein_coding MGP_CASTEiJ_T0028913.1 MGP_CASTEiJ_G0017735.1 mouse_genomes_project 11 60351953 60361949 + MGP_CASTEiJ_P0028913 Smcr8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030556.1 MGP_CASTEiJ_G0018103.1 mouse_genomes_project 11 80071809 80093318 - MGP_CASTEiJ_P0030556 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030557.1 MGP_CASTEiJ_G0018103.1 mouse_genomes_project 11 80071809 80093318 - MGP_CASTEiJ_P0030557 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030558.1 MGP_CASTEiJ_G0018103.1 mouse_genomes_project 11 80076479 80081373 - protein_coding retained_intron MGP_CASTEiJ_T0030559.1 MGP_CASTEiJ_G0018103.1 mouse_genomes_project 11 80078600 80087924 - MGP_CASTEiJ_P0030559 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030560.1 MGP_CASTEiJ_G0018103.1 mouse_genomes_project 11 80078631 80081276 - protein_coding processed_transcript MGP_CASTEiJ_T0030561.1 MGP_CASTEiJ_G0018103.1 mouse_genomes_project 11 80081636 80093568 - MGP_CASTEiJ_P0030561 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030562.1 MGP_CASTEiJ_G0018103.1 mouse_genomes_project 11 80081748 80093369 - MGP_CASTEiJ_P0030562 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030563.1 MGP_CASTEiJ_G0018103.1 mouse_genomes_project 11 80082455 80089931 - protein_coding retained_intron MGP_CASTEiJ_T0006097.1 MGP_CASTEiJ_G0005106.1 mouse_genomes_project 11 66876296 66885349 + lincRNA lincRNA MGP_CASTEiJ_T0006098.1 MGP_CASTEiJ_G0005106.1 mouse_genomes_project 11 66877533 66885873 + lincRNA lincRNA MGP_CASTEiJ_T0028200.1 MGP_CASTEiJ_G0017550.1 mouse_genomes_project 11 48530675 48545640 + Gfpt2 protein_coding retained_intron MGP_CASTEiJ_T0028201.1 MGP_CASTEiJ_G0017550.1 mouse_genomes_project 11 48530684 48577957 + MGP_CASTEiJ_P0028201 Gfpt2 protein_coding protein_coding MGP_CASTEiJ_T0028202.1 MGP_CASTEiJ_G0017550.1 mouse_genomes_project 11 48530707 48577170 + MGP_CASTEiJ_P0028202 Gfpt2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028709.1 MGP_CASTEiJ_G0017685.1 mouse_genomes_project 11 58071439 58072405 + MGP_CASTEiJ_P0028709 protein_coding protein_coding MGP_CASTEiJ_T0028442.1 MGP_CASTEiJ_G0017606.1 mouse_genomes_project 11 52495981 52496974 - MGP_CASTEiJ_P0028442 Leap2 protein_coding protein_coding MGP_CASTEiJ_T0027356.1 MGP_CASTEiJ_G0017342.1 mouse_genomes_project 11 3571877 3624722 + MGP_CASTEiJ_P0027356 Ccm2 protein_coding protein_coding MGP_CASTEiJ_T0027357.1 MGP_CASTEiJ_G0017342.1 mouse_genomes_project 11 3571900 3617535 + MGP_CASTEiJ_P0027357 Ccm2 protein_coding protein_coding MGP_CASTEiJ_T0027358.1 MGP_CASTEiJ_G0017342.1 mouse_genomes_project 11 3585142 3624712 + MGP_CASTEiJ_P0027358 Ccm2 protein_coding protein_coding MGP_CASTEiJ_T0027359.1 MGP_CASTEiJ_G0017342.1 mouse_genomes_project 11 3586269 3621149 + MGP_CASTEiJ_P0027359 Ccm2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027360.1 MGP_CASTEiJ_G0017342.1 mouse_genomes_project 11 3586278 3588095 + Ccm2 protein_coding processed_transcript MGP_CASTEiJ_T0027361.1 MGP_CASTEiJ_G0017342.1 mouse_genomes_project 11 3586291 3621086 + MGP_CASTEiJ_P0027361 Ccm2 protein_coding protein_coding MGP_CASTEiJ_T0027362.1 MGP_CASTEiJ_G0017342.1 mouse_genomes_project 11 3586387 3624720 + MGP_CASTEiJ_P0027362 Ccm2 protein_coding protein_coding MGP_CASTEiJ_T0027363.1 MGP_CASTEiJ_G0017342.1 mouse_genomes_project 11 3621063 3622285 + Ccm2 protein_coding retained_intron MGP_CASTEiJ_T0027772.1 MGP_CASTEiJ_G0017428.1 mouse_genomes_project 11 27586383 27884772 - MGP_CASTEiJ_P0027772 Eml6 protein_coding protein_coding MGP_CASTEiJ_T0027773.1 MGP_CASTEiJ_G0017428.1 mouse_genomes_project 11 27587460 27611994 - Eml6 protein_coding retained_intron MGP_CASTEiJ_T0027774.1 MGP_CASTEiJ_G0017428.1 mouse_genomes_project 11 27589971 27595918 - Eml6 protein_coding retained_intron MGP_CASTEiJ_T0027775.1 MGP_CASTEiJ_G0017428.1 mouse_genomes_project 11 27590790 27594103 - Eml6 protein_coding retained_intron MGP_CASTEiJ_T0027776.1 MGP_CASTEiJ_G0017428.1 mouse_genomes_project 11 27594540 27608036 - MGP_CASTEiJ_P0027776 Eml6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027777.1 MGP_CASTEiJ_G0017428.1 mouse_genomes_project 11 27653707 27654818 - Eml6 protein_coding retained_intron MGP_CASTEiJ_T0027778.1 MGP_CASTEiJ_G0017428.1 mouse_genomes_project 11 27661004 27673193 - MGP_CASTEiJ_P0027778 Eml6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031109.1 MGP_CASTEiJ_G0018239.1 mouse_genomes_project 11 90627373 90649884 + MGP_CASTEiJ_P0031109 Trim25 protein_coding protein_coding MGP_CASTEiJ_T0031110.1 MGP_CASTEiJ_G0018239.1 mouse_genomes_project 11 90627373 90643332 + MGP_CASTEiJ_P0031110 Trim25 protein_coding protein_coding MGP_CASTEiJ_T0031111.1 MGP_CASTEiJ_G0018239.1 mouse_genomes_project 11 90627373 90649884 + MGP_CASTEiJ_P0031111 Trim25 protein_coding protein_coding MGP_CASTEiJ_T0031112.1 MGP_CASTEiJ_G0018239.1 mouse_genomes_project 11 90627456 90646659 + MGP_CASTEiJ_P0031112 Trim25 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031113.1 MGP_CASTEiJ_G0018239.1 mouse_genomes_project 11 90627460 90646659 + MGP_CASTEiJ_P0031113 Trim25 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006151.1 MGP_CASTEiJ_G0005143.1 mouse_genomes_project 11 90765286 90767539 - Gm11497 lincRNA lincRNA MGP_CASTEiJ_T0029420.1 MGP_CASTEiJ_G0017843.1 mouse_genomes_project 11 69487704 69630746 - MGP_CASTEiJ_P0029420 Dnah2 protein_coding protein_coding MGP_CASTEiJ_T0029421.1 MGP_CASTEiJ_G0017843.1 mouse_genomes_project 11 69487704 69635381 - MGP_CASTEiJ_P0029421 Dnah2 protein_coding protein_coding MGP_CASTEiJ_T0029422.1 MGP_CASTEiJ_G0017843.1 mouse_genomes_project 11 69487888 69632840 - MGP_CASTEiJ_P0029422 Dnah2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029423.1 MGP_CASTEiJ_G0017843.1 mouse_genomes_project 11 69537284 69538369 - Dnah2 protein_coding processed_transcript MGP_CASTEiJ_T0029424.1 MGP_CASTEiJ_G0017843.1 mouse_genomes_project 11 69593505 69635383 - Dnah2 protein_coding processed_transcript MGP_CASTEiJ_T0029425.1 MGP_CASTEiJ_G0017843.1 mouse_genomes_project 11 69599051 69599801 - Dnah2 protein_coding processed_transcript MGP_CASTEiJ_T0031411.1 MGP_CASTEiJ_G0018313.1 mouse_genomes_project 11 98467363 98471763 + Hoxb5 protein_coding retained_intron MGP_CASTEiJ_T0031412.1 MGP_CASTEiJ_G0018313.1 mouse_genomes_project 11 98467539 98471762 + MGP_CASTEiJ_P0031412 Hoxb5 protein_coding protein_coding MGP_CASTEiJ_T0027402.1 MGP_CASTEiJ_G0017353.1 mouse_genomes_project 11 6115730 6140074 - MGP_CASTEiJ_P0027402 Hus1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027403.1 MGP_CASTEiJ_G0017353.1 mouse_genomes_project 11 6115730 6140105 - MGP_CASTEiJ_P0027403 Hus1 protein_coding protein_coding MGP_CASTEiJ_T0027404.1 MGP_CASTEiJ_G0017353.1 mouse_genomes_project 11 6117991 6140042 - Hus1 protein_coding retained_intron MGP_CASTEiJ_T0027405.1 MGP_CASTEiJ_G0017353.1 mouse_genomes_project 11 6119986 6140078 - Hus1 protein_coding retained_intron MGP_CASTEiJ_T0027406.1 MGP_CASTEiJ_G0017353.1 mouse_genomes_project 11 6121395 6139592 - Hus1 protein_coding retained_intron MGP_CASTEiJ_T0027407.1 MGP_CASTEiJ_G0017353.1 mouse_genomes_project 11 6134049 6140042 - Hus1 protein_coding processed_transcript MGP_CASTEiJ_T0012386.1 MGP_CASTEiJ_G0010549.1 mouse_genomes_project 11 105399951 105400272 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030016.1 MGP_CASTEiJ_G0017970.1 mouse_genomes_project 11 73776717 73780501 + MGP_CASTEiJ_P0030016 Olfr20 protein_coding protein_coding MGP_CASTEiJ_T0009483.1 MGP_CASTEiJ_G0007671.1 mouse_genomes_project 11 89248867 89248931 + Mir142 miRNA miRNA MGP_CASTEiJ_T0027119.1 MGP_CASTEiJ_G0017291.1 mouse_genomes_project 11 993544 999548 + MGP_CASTEiJ_P0027119 Rnf215 protein_coding protein_coding MGP_CASTEiJ_T0027120.1 MGP_CASTEiJ_G0017291.1 mouse_genomes_project 11 993556 995705 + MGP_CASTEiJ_P0027120 Rnf215 protein_coding protein_coding MGP_CASTEiJ_T0027121.1 MGP_CASTEiJ_G0017291.1 mouse_genomes_project 11 993624 995554 + MGP_CASTEiJ_P0027121 Rnf215 protein_coding protein_coding MGP_CASTEiJ_T0027122.1 MGP_CASTEiJ_G0017291.1 mouse_genomes_project 11 993844 995492 + Rnf215 protein_coding processed_transcript MGP_CASTEiJ_T0029210.1 MGP_CASTEiJ_G0017794.1 mouse_genomes_project 11 67009684 67033682 + MGP_CASTEiJ_P0029210 Myh3 protein_coding protein_coding MGP_CASTEiJ_T0029211.1 MGP_CASTEiJ_G0017794.1 mouse_genomes_project 11 67009684 67033682 + MGP_CASTEiJ_P0029211 Myh3 protein_coding protein_coding MGP_CASTEiJ_T0029212.1 MGP_CASTEiJ_G0017794.1 mouse_genomes_project 11 67009684 67033677 + MGP_CASTEiJ_P0029212 Myh3 protein_coding protein_coding MGP_CASTEiJ_T0009428.1 MGP_CASTEiJ_G0007616.1 mouse_genomes_project 11 48994887 48994949 + Mir6919 miRNA miRNA MGP_CASTEiJ_T0003081.1 MGP_CASTEiJ_G0002869.1 mouse_genomes_project 11 61129974 61130648 - B9d1os antisense antisense MGP_CASTEiJ_T0030040.1 MGP_CASTEiJ_G0017989.1 mouse_genomes_project 11 74439625 74440570 - MGP_CASTEiJ_P0030040 Olfr398 protein_coding protein_coding MGP_CASTEiJ_T0031689.1 MGP_CASTEiJ_G0018376.1 mouse_genomes_project 11 101146033 101165926 + MGP_CASTEiJ_P0031689 Gsdma protein_coding protein_coding MGP_CASTEiJ_T0028508.1 MGP_CASTEiJ_G0017624.1 mouse_genomes_project 11 53093418 53106292 - MGP_CASTEiJ_P0028508 protein_coding protein_coding MGP_CASTEiJ_T0003143.1 MGP_CASTEiJ_G0002919.1 mouse_genomes_project 11 88572828 88579217 - Gm11491 antisense antisense MGP_CASTEiJ_T0003144.1 MGP_CASTEiJ_G0002919.1 mouse_genomes_project 11 88573038 88579270 - Gm11491 antisense antisense MGP_CASTEiJ_T0009479.1 MGP_CASTEiJ_G0007667.1 mouse_genomes_project 11 87124717 87124804 - Mir5110 miRNA miRNA MGP_CASTEiJ_T0006128.1 MGP_CASTEiJ_G0005128.1 mouse_genomes_project 11 83023119 83026468 + Gm11419 lincRNA lincRNA MGP_CASTEiJ_T0009467.1 MGP_CASTEiJ_G0007655.1 mouse_genomes_project 11 76008781 76008876 + Mir22 miRNA miRNA MGP_CASTEiJ_T0031898.1 MGP_CASTEiJ_G0018464.1 mouse_genomes_project 11 103220136 103247021 + MGP_CASTEiJ_P0031898 Ttc25 protein_coding protein_coding MGP_CASTEiJ_T0031899.1 MGP_CASTEiJ_G0018464.1 mouse_genomes_project 11 103220200 103244866 + Ttc25 protein_coding retained_intron MGP_CASTEiJ_T0031900.1 MGP_CASTEiJ_G0018464.1 mouse_genomes_project 11 103220216 103224713 + Ttc25 protein_coding retained_intron MGP_CASTEiJ_T0031901.1 MGP_CASTEiJ_G0018464.1 mouse_genomes_project 11 103224049 103224831 + Ttc25 protein_coding retained_intron MGP_CASTEiJ_T0009408.1 MGP_CASTEiJ_G0007596.1 mouse_genomes_project 11 18373401 18373518 - Gm23681 miRNA miRNA MGP_CASTEiJ_T0101988.1 MGP_CASTEiJ_G0038713.1 mouse_genomes_project 11 73924949 73925034 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0031994.1 MGP_CASTEiJ_G0018484.1 mouse_genomes_project 11 103799776 103804079 + MGP_CASTEiJ_P0031994 Mlx protein_coding unknown_likely_coding MGP_CASTEiJ_T0031995.1 MGP_CASTEiJ_G0018484.1 mouse_genomes_project 11 103799776 103804079 + MGP_CASTEiJ_P0031995 Mlx protein_coding unknown_likely_coding MGP_CASTEiJ_T0031996.1 MGP_CASTEiJ_G0018484.1 mouse_genomes_project 11 103799826 103804753 + MGP_CASTEiJ_P0031996 Mlx protein_coding protein_coding MGP_CASTEiJ_T0031997.1 MGP_CASTEiJ_G0018484.1 mouse_genomes_project 11 103799839 103803684 + Mlx protein_coding processed_transcript MGP_CASTEiJ_T0031998.1 MGP_CASTEiJ_G0018484.1 mouse_genomes_project 11 103799839 103803704 + Mlx protein_coding processed_transcript MGP_CASTEiJ_T0031999.1 MGP_CASTEiJ_G0018484.1 mouse_genomes_project 11 103799853 103801525 + MGP_CASTEiJ_P0031999 Mlx protein_coding protein_coding MGP_CASTEiJ_T0032000.1 MGP_CASTEiJ_G0018484.1 mouse_genomes_project 11 103802216 103804076 + Mlx protein_coding processed_transcript MGP_CASTEiJ_T0102014.1 MGP_CASTEiJ_G0038739.1 mouse_genomes_project 11 102886287 102888140 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0030137.1 MGP_CASTEiJ_G0018016.1 mouse_genomes_project 11 75894919 75945079 + MGP_CASTEiJ_P0030137 Smyd4 protein_coding protein_coding MGP_CASTEiJ_T0030138.1 MGP_CASTEiJ_G0018016.1 mouse_genomes_project 11 75894981 75922118 + Smyd4 protein_coding retained_intron MGP_CASTEiJ_T0030139.1 MGP_CASTEiJ_G0018016.1 mouse_genomes_project 11 75926178 75929382 + Smyd4 protein_coding processed_transcript MGP_CASTEiJ_T0030140.1 MGP_CASTEiJ_G0018016.1 mouse_genomes_project 11 75938811 75939841 + Smyd4 protein_coding processed_transcript MGP_CASTEiJ_T0016485.1 MGP_CASTEiJ_G0014500.1 mouse_genomes_project 11 76366116 76398035 + Gm12339 processed_transcript antisense MGP_CASTEiJ_T0016486.1 MGP_CASTEiJ_G0014500.1 mouse_genomes_project 11 76366568 76398053 + Gm12339 processed_transcript processed_transcript MGP_CASTEiJ_T0030426.1 MGP_CASTEiJ_G0018072.1 mouse_genomes_project 11 78908327 78918731 - Nek8 protein_coding retained_intron MGP_CASTEiJ_T0030427.1 MGP_CASTEiJ_G0018072.1 mouse_genomes_project 11 78908327 78918795 - MGP_CASTEiJ_P0030427 Nek8 protein_coding protein_coding MGP_CASTEiJ_T0030428.1 MGP_CASTEiJ_G0018072.1 mouse_genomes_project 11 78908331 78909673 - Nek8 protein_coding retained_intron MGP_CASTEiJ_T0030429.1 MGP_CASTEiJ_G0018072.1 mouse_genomes_project 11 78908738 78918747 - Nek8 protein_coding retained_intron MGP_CASTEiJ_T0030430.1 MGP_CASTEiJ_G0018072.1 mouse_genomes_project 11 78909539 78910317 - Nek8 protein_coding retained_intron MGP_CASTEiJ_T0030431.1 MGP_CASTEiJ_G0018072.1 mouse_genomes_project 11 78911259 78912130 - Nek8 protein_coding retained_intron MGP_CASTEiJ_T0030432.1 MGP_CASTEiJ_G0018072.1 mouse_genomes_project 11 78912282 78918734 - Nek8 protein_coding retained_intron MGP_CASTEiJ_T0030433.1 MGP_CASTEiJ_G0018072.1 mouse_genomes_project 11 78913477 78918754 - MGP_CASTEiJ_P0030433 Nek8 protein_coding protein_coding MGP_CASTEiJ_T0031962.1 MGP_CASTEiJ_G0018478.1 mouse_genomes_project 11 103577767 103637117 - MGP_CASTEiJ_P0031962 Stat3 protein_coding protein_coding MGP_CASTEiJ_T0031963.1 MGP_CASTEiJ_G0018478.1 mouse_genomes_project 11 103579473 103640821 - MGP_CASTEiJ_P0031963 Stat3 protein_coding protein_coding MGP_CASTEiJ_T0031964.1 MGP_CASTEiJ_G0018478.1 mouse_genomes_project 11 103580891 103582977 - Stat3 protein_coding retained_intron MGP_CASTEiJ_T0031965.1 MGP_CASTEiJ_G0018478.1 mouse_genomes_project 11 103582142 103586406 - Stat3 protein_coding retained_intron MGP_CASTEiJ_T0031966.1 MGP_CASTEiJ_G0018478.1 mouse_genomes_project 11 103585691 103586465 - Stat3 protein_coding retained_intron MGP_CASTEiJ_T0031967.1 MGP_CASTEiJ_G0018478.1 mouse_genomes_project 11 103586186 103587094 - Stat3 protein_coding retained_intron MGP_CASTEiJ_T0031968.1 MGP_CASTEiJ_G0018478.1 mouse_genomes_project 11 103586633 103592843 - Stat3 protein_coding processed_transcript MGP_CASTEiJ_T0031969.1 MGP_CASTEiJ_G0018478.1 mouse_genomes_project 11 103587145 103587673 - Stat3 protein_coding retained_intron MGP_CASTEiJ_T0031970.1 MGP_CASTEiJ_G0018478.1 mouse_genomes_project 11 103587147 103592064 - Stat3 protein_coding retained_intron MGP_CASTEiJ_T0031971.1 MGP_CASTEiJ_G0018478.1 mouse_genomes_project 11 103596482 103599120 - Stat3 protein_coding retained_intron MGP_CASTEiJ_T0031972.1 MGP_CASTEiJ_G0018478.1 mouse_genomes_project 11 103598788 103599539 - Stat3 protein_coding retained_intron MGP_CASTEiJ_T0031973.1 MGP_CASTEiJ_G0018478.1 mouse_genomes_project 11 103599348 103601921 - Stat3 protein_coding retained_intron MGP_CASTEiJ_T0028280.1 MGP_CASTEiJ_G0017565.1 mouse_genomes_project 11 49620327 49638316 - MGP_CASTEiJ_P0028280 Zfp354c protein_coding unknown_likely_coding MGP_CASTEiJ_T0028281.1 MGP_CASTEiJ_G0017565.1 mouse_genomes_project 11 49625136 49638197 - MGP_CASTEiJ_P0028281 Zfp354c protein_coding unknown_likely_coding MGP_CASTEiJ_T0028282.1 MGP_CASTEiJ_G0017565.1 mouse_genomes_project 11 49626440 49638220 - Zfp354c protein_coding processed_transcript MGP_CASTEiJ_T0028283.1 MGP_CASTEiJ_G0017565.1 mouse_genomes_project 11 49636809 49638258 - Zfp354c protein_coding processed_transcript MGP_CASTEiJ_T0012291.1 MGP_CASTEiJ_G0010454.1 mouse_genomes_project 11 68010199 68010868 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016547.1 MGP_CASTEiJ_G0014537.1 mouse_genomes_project 11 124442040 124443787 + Gm11769 processed_transcript processed_transcript MGP_CASTEiJ_T0012210.1 MGP_CASTEiJ_G0010373.1 mouse_genomes_project 11 30895864 30896444 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029870.1 MGP_CASTEiJ_G0017934.1 mouse_genomes_project 11 72081795 72093357 + MGP_CASTEiJ_P0029870 Wscd1 protein_coding protein_coding MGP_CASTEiJ_T0029871.1 MGP_CASTEiJ_G0017934.1 mouse_genomes_project 11 72082561 72122950 + MGP_CASTEiJ_P0029871 Wscd1 protein_coding protein_coding MGP_CASTEiJ_T0029872.1 MGP_CASTEiJ_G0017934.1 mouse_genomes_project 11 72082856 72122950 + MGP_CASTEiJ_P0029872 Wscd1 protein_coding protein_coding MGP_CASTEiJ_T0029873.1 MGP_CASTEiJ_G0017934.1 mouse_genomes_project 11 72083024 72149071 + MGP_CASTEiJ_P0029873 Wscd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029874.1 MGP_CASTEiJ_G0017934.1 mouse_genomes_project 11 72083252 72094214 + Wscd1 protein_coding retained_intron MGP_CASTEiJ_T0029875.1 MGP_CASTEiJ_G0017934.1 mouse_genomes_project 11 72083252 72122950 + MGP_CASTEiJ_P0029875 Wscd1 protein_coding protein_coding MGP_CASTEiJ_T0029876.1 MGP_CASTEiJ_G0017934.1 mouse_genomes_project 11 72101987 72118577 + Wscd1 protein_coding processed_transcript MGP_CASTEiJ_T0012160.1 MGP_CASTEiJ_G0010323.1 mouse_genomes_project 11 17087753 17088395 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100435.1 MGP_CASTEiJ_G0037348.1 mouse_genomes_project 11 47520107 47520188 + Snord96a snoRNA snoRNA MGP_CASTEiJ_T0028534.1 MGP_CASTEiJ_G0017628.1 mouse_genomes_project 11 53388180 53390553 - MGP_CASTEiJ_P0028534 Csf2 protein_coding protein_coding MGP_CASTEiJ_T0099223.1 MGP_CASTEiJ_G0036136.1 mouse_genomes_project 11 22180160 22180233 - Gm22787 snRNA snRNA MGP_CASTEiJ_T0033758.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125023661 125025026 + Aspscr1 protein_coding retained_intron MGP_CASTEiJ_T0033759.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125023697 125066215 + MGP_CASTEiJ_P0033759 Aspscr1 protein_coding protein_coding MGP_CASTEiJ_T0033760.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125023714 125026661 + Aspscr1 protein_coding retained_intron MGP_CASTEiJ_T0033761.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125023751 125056691 + MGP_CASTEiJ_P0033761 Aspscr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033762.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125023771 125065837 + MGP_CASTEiJ_P0033762 Aspscr1 protein_coding protein_coding MGP_CASTEiJ_T0033763.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125023786 125041666 + MGP_CASTEiJ_P0033763 Aspscr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033764.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125024047 125041769 + MGP_CASTEiJ_P0033764 Aspscr1 protein_coding protein_coding MGP_CASTEiJ_T0033765.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125024062 125041765 + MGP_CASTEiJ_P0033765 Aspscr1 protein_coding protein_coding MGP_CASTEiJ_T0033766.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125024062 125029128 + MGP_CASTEiJ_P0033766 Aspscr1 protein_coding protein_coding MGP_CASTEiJ_T0033767.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125024080 125041725 + MGP_CASTEiJ_P0033767 Aspscr1 protein_coding protein_coding MGP_CASTEiJ_T0033768.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125024092 125039338 + MGP_CASTEiJ_P0033768 Aspscr1 protein_coding protein_coding MGP_CASTEiJ_T0033769.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125027337 125066207 + MGP_CASTEiJ_P0033769 Aspscr1 protein_coding protein_coding MGP_CASTEiJ_T0033770.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125027902 125029120 + MGP_CASTEiJ_P0033770 Aspscr1 protein_coding protein_coding MGP_CASTEiJ_T0033771.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125028015 125041895 + MGP_CASTEiJ_P0033771 Aspscr1 protein_coding protein_coding MGP_CASTEiJ_T0033772.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125039329 125066208 + MGP_CASTEiJ_P0033772 Aspscr1 protein_coding protein_coding MGP_CASTEiJ_T0033773.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125041871 125066208 + MGP_CASTEiJ_P0033773 Aspscr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033774.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125041907 125066006 + MGP_CASTEiJ_P0033774 Aspscr1 protein_coding protein_coding MGP_CASTEiJ_T0033775.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125057637 125066209 + MGP_CASTEiJ_P0033775 Aspscr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033776.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125065422 125066207 + Aspscr1 protein_coding retained_intron MGP_CASTEiJ_T0033777.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125065524 125066212 + Aspscr1 protein_coding retained_intron MGP_CASTEiJ_T0033778.1 MGP_CASTEiJ_G0018824.1 mouse_genomes_project 11 125065622 125066210 + Aspscr1 protein_coding retained_intron MGP_CASTEiJ_T0031225.1 MGP_CASTEiJ_G0018265.1 mouse_genomes_project 11 96242488 96299288 - MGP_CASTEiJ_P0031225 Abcc3 protein_coding protein_coding MGP_CASTEiJ_T0031226.1 MGP_CASTEiJ_G0018265.1 mouse_genomes_project 11 96242491 96299288 - MGP_CASTEiJ_P0031226 Abcc3 protein_coding protein_coding MGP_CASTEiJ_T0031227.1 MGP_CASTEiJ_G0018265.1 mouse_genomes_project 11 96242846 96253613 - Abcc3 protein_coding processed_transcript MGP_CASTEiJ_T0031228.1 MGP_CASTEiJ_G0018265.1 mouse_genomes_project 11 96269410 96273285 - Abcc3 protein_coding processed_transcript MGP_CASTEiJ_T0031229.1 MGP_CASTEiJ_G0018265.1 mouse_genomes_project 11 96270055 96299232 - Abcc3 protein_coding processed_transcript MGP_CASTEiJ_T0031230.1 MGP_CASTEiJ_G0018265.1 mouse_genomes_project 11 96279924 96299309 - Abcc3 protein_coding processed_transcript MGP_CASTEiJ_T0012155.1 MGP_CASTEiJ_G0010318.1 mouse_genomes_project 11 15828921 15830675 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032734.1 MGP_CASTEiJ_G0018628.1 mouse_genomes_project 11 111128824 111175312 - MGP_CASTEiJ_P0032734 Cacng5 protein_coding protein_coding MGP_CASTEiJ_T0032735.1 MGP_CASTEiJ_G0018628.1 mouse_genomes_project 11 111128829 111175330 - MGP_CASTEiJ_P0032735 Cacng5 protein_coding protein_coding MGP_CASTEiJ_T0032956.1 MGP_CASTEiJ_G0018677.1 mouse_genomes_project 11 119021968 119041243 + MGP_CASTEiJ_P0032956 Slc9a3r1 protein_coding protein_coding MGP_CASTEiJ_T0031655.1 MGP_CASTEiJ_G0018367.1 mouse_genomes_project 11 100741223 100744625 - Pgap3 protein_coding processed_transcript MGP_CASTEiJ_T0031656.1 MGP_CASTEiJ_G0018367.1 mouse_genomes_project 11 100741223 100754594 - MGP_CASTEiJ_P0031656 Pgap3 protein_coding protein_coding MGP_CASTEiJ_T0031657.1 MGP_CASTEiJ_G0018367.1 mouse_genomes_project 11 100742173 100754539 - MGP_CASTEiJ_P0031657 Pgap3 protein_coding protein_coding MGP_CASTEiJ_T0031658.1 MGP_CASTEiJ_G0018367.1 mouse_genomes_project 11 100743875 100754518 - Pgap3 protein_coding processed_transcript MGP_CASTEiJ_T0031659.1 MGP_CASTEiJ_G0018367.1 mouse_genomes_project 11 100752686 100754541 - Pgap3 protein_coding processed_transcript MGP_CASTEiJ_T0028796.1 MGP_CASTEiJ_G0017712.1 mouse_genomes_project 11 59067709 59068828 - MGP_CASTEiJ_P0028796 Olfr222 protein_coding protein_coding MGP_CASTEiJ_T0029520.1 MGP_CASTEiJ_G0017868.1 mouse_genomes_project 11 69950982 69952082 + MGP_CASTEiJ_P0029520 Tmem256 protein_coding protein_coding MGP_CASTEiJ_T0029521.1 MGP_CASTEiJ_G0017868.1 mouse_genomes_project 11 69950992 69952087 + MGP_CASTEiJ_P0029521 Tmem256 protein_coding protein_coding MGP_CASTEiJ_T0029522.1 MGP_CASTEiJ_G0017868.1 mouse_genomes_project 11 69951023 69951916 + Tmem256 protein_coding processed_transcript MGP_CASTEiJ_T0029523.1 MGP_CASTEiJ_G0017868.1 mouse_genomes_project 11 69951031 69952081 + Tmem256 protein_coding processed_transcript MGP_CASTEiJ_T0029524.1 MGP_CASTEiJ_G0017868.1 mouse_genomes_project 11 69951106 69952042 + Tmem256 protein_coding processed_transcript MGP_CASTEiJ_T0033160.1 MGP_CASTEiJ_G0018713.1 mouse_genomes_project 11 119963883 119968190 - MGP_CASTEiJ_P0033160 Galk1 protein_coding protein_coding MGP_CASTEiJ_T0099239.1 MGP_CASTEiJ_G0036152.1 mouse_genomes_project 11 61602031 61602138 - Gm23721 snRNA snRNA MGP_CASTEiJ_T0032914.1 MGP_CASTEiJ_G0018665.1 mouse_genomes_project 11 118609422 118614075 - Btbd17 protein_coding processed_transcript MGP_CASTEiJ_T0032915.1 MGP_CASTEiJ_G0018665.1 mouse_genomes_project 11 118609422 118614112 - Btbd17 protein_coding processed_transcript MGP_CASTEiJ_T0032916.1 MGP_CASTEiJ_G0018665.1 mouse_genomes_project 11 118609422 118614099 - MGP_CASTEiJ_P0032916 Btbd17 protein_coding protein_coding MGP_CASTEiJ_T0032917.1 MGP_CASTEiJ_G0018665.1 mouse_genomes_project 11 118609432 118626199 - MGP_CASTEiJ_P0032917 Btbd17 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032918.1 MGP_CASTEiJ_G0018665.1 mouse_genomes_project 11 118610311 118614147 - Btbd17 protein_coding processed_transcript MGP_CASTEiJ_T0032919.1 MGP_CASTEiJ_G0018665.1 mouse_genomes_project 11 118610490 118614101 - Btbd17 protein_coding processed_transcript MGP_CASTEiJ_T0032920.1 MGP_CASTEiJ_G0018665.1 mouse_genomes_project 11 118610637 118614075 - Btbd17 protein_coding processed_transcript MGP_CASTEiJ_T0032921.1 MGP_CASTEiJ_G0018665.1 mouse_genomes_project 11 118610674 118614094 - Btbd17 protein_coding processed_transcript MGP_CASTEiJ_T0006196.1 MGP_CASTEiJ_G0005176.1 mouse_genomes_project 11 117959976 117985471 - Gm11690 lincRNA lincRNA MGP_CASTEiJ_T0029378.1 MGP_CASTEiJ_G0017833.1 mouse_genomes_project 11 69273060 69291950 - MGP_CASTEiJ_P0029378 Gucy2e protein_coding protein_coding MGP_CASTEiJ_T0029379.1 MGP_CASTEiJ_G0017833.1 mouse_genomes_project 11 69273063 69291950 - MGP_CASTEiJ_P0029379 Gucy2e protein_coding protein_coding MGP_CASTEiJ_T0029380.1 MGP_CASTEiJ_G0017833.1 mouse_genomes_project 11 69276099 69291963 - MGP_CASTEiJ_P0029380 Gucy2e protein_coding protein_coding MGP_CASTEiJ_T0029381.1 MGP_CASTEiJ_G0017833.1 mouse_genomes_project 11 69281581 69291950 - Gucy2e protein_coding processed_transcript MGP_CASTEiJ_T0102010.1 MGP_CASTEiJ_G0038735.1 mouse_genomes_project 11 102292676 102292813 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0033494.1 MGP_CASTEiJ_G0018775.1 mouse_genomes_project 11 123231525 123241475 + MGP_CASTEiJ_P0033494 Cbx2 protein_coding protein_coding MGP_CASTEiJ_T0033495.1 MGP_CASTEiJ_G0018775.1 mouse_genomes_project 11 123232288 123238244 + Cbx2 protein_coding processed_transcript MGP_CASTEiJ_T0027348.1 MGP_CASTEiJ_G0017340.1 mouse_genomes_project 11 3474489 3482791 - MGP_CASTEiJ_P0027348 Purb protein_coding protein_coding MGP_CASTEiJ_T0003045.1 MGP_CASTEiJ_G0002838.1 mouse_genomes_project 11 48888629 48889550 - Gm12195 antisense antisense MGP_CASTEiJ_T0027959.1 MGP_CASTEiJ_G0017479.1 mouse_genomes_project 11 39014108 39027499 - MGP_CASTEiJ_P0027959 Mat2b protein_coding protein_coding MGP_CASTEiJ_T0027960.1 MGP_CASTEiJ_G0017479.1 mouse_genomes_project 11 39014108 39029914 - MGP_CASTEiJ_P0027960 Mat2b protein_coding protein_coding MGP_CASTEiJ_T0027961.1 MGP_CASTEiJ_G0017479.1 mouse_genomes_project 11 39014734 39038776 - MGP_CASTEiJ_P0027961 Mat2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0027962.1 MGP_CASTEiJ_G0017479.1 mouse_genomes_project 11 39015451 39027346 - MGP_CASTEiJ_P0027962 Mat2b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027963.1 MGP_CASTEiJ_G0017479.1 mouse_genomes_project 11 39015505 39020046 - Mat2b protein_coding retained_intron MGP_CASTEiJ_T0027964.1 MGP_CASTEiJ_G0017479.1 mouse_genomes_project 11 39019523 39020629 - Mat2b protein_coding retained_intron MGP_CASTEiJ_T0027965.1 MGP_CASTEiJ_G0017479.1 mouse_genomes_project 11 39020304 39027353 - Mat2b protein_coding retained_intron MGP_CASTEiJ_T0027966.1 MGP_CASTEiJ_G0017479.1 mouse_genomes_project 11 39022142 39029698 - Mat2b protein_coding retained_intron MGP_CASTEiJ_T0030990.1 MGP_CASTEiJ_G0018214.1 mouse_genomes_project 11 89046649 89049247 + MGP_CASTEiJ_P0030990 Gm11492 protein_coding protein_coding MGP_CASTEiJ_T0028086.1 MGP_CASTEiJ_G0017512.1 mouse_genomes_project 11 45035378 45039336 + MGP_CASTEiJ_P0028086 Med7 protein_coding protein_coding MGP_CASTEiJ_T0028087.1 MGP_CASTEiJ_G0017512.1 mouse_genomes_project 11 45035402 45039242 + MGP_CASTEiJ_P0028087 Med7 protein_coding protein_coding MGP_CASTEiJ_T0028088.1 MGP_CASTEiJ_G0017512.1 mouse_genomes_project 11 45035405 45040004 + MGP_CASTEiJ_P0028088 Med7 protein_coding protein_coding MGP_CASTEiJ_T0028089.1 MGP_CASTEiJ_G0017512.1 mouse_genomes_project 11 45035414 45041201 + MGP_CASTEiJ_P0028089 Med7 protein_coding protein_coding MGP_CASTEiJ_T0028090.1 MGP_CASTEiJ_G0017512.1 mouse_genomes_project 11 45035424 45039578 + MGP_CASTEiJ_P0028090 Med7 protein_coding protein_coding MGP_CASTEiJ_T0028091.1 MGP_CASTEiJ_G0017512.1 mouse_genomes_project 11 45035427 45041201 + MGP_CASTEiJ_P0028091 Med7 protein_coding protein_coding MGP_CASTEiJ_T0028092.1 MGP_CASTEiJ_G0017512.1 mouse_genomes_project 11 45035431 45039528 + MGP_CASTEiJ_P0028092 Med7 protein_coding protein_coding MGP_CASTEiJ_T0028093.1 MGP_CASTEiJ_G0017512.1 mouse_genomes_project 11 45035458 45038398 + Med7 protein_coding processed_transcript MGP_CASTEiJ_T0028094.1 MGP_CASTEiJ_G0017512.1 mouse_genomes_project 11 45038107 45039456 + MGP_CASTEiJ_P0028094 Med7 protein_coding protein_coding MGP_CASTEiJ_T0032137.1 MGP_CASTEiJ_G0018513.1 mouse_genomes_project 11 104330906 104346665 + MGP_CASTEiJ_P0032137 Tmem106a protein_coding protein_coding MGP_CASTEiJ_T0032138.1 MGP_CASTEiJ_G0018513.1 mouse_genomes_project 11 104330906 104346665 + MGP_CASTEiJ_P0032138 Tmem106a protein_coding protein_coding MGP_CASTEiJ_T0032139.1 MGP_CASTEiJ_G0018513.1 mouse_genomes_project 11 104330908 104344308 + Tmem106a protein_coding processed_transcript MGP_CASTEiJ_T0032140.1 MGP_CASTEiJ_G0018513.1 mouse_genomes_project 11 104330921 104343814 + MGP_CASTEiJ_P0032140 Tmem106a protein_coding protein_coding MGP_CASTEiJ_T0032141.1 MGP_CASTEiJ_G0018513.1 mouse_genomes_project 11 104330932 104346671 + MGP_CASTEiJ_P0032141 Tmem106a protein_coding unknown_likely_coding MGP_CASTEiJ_T0032142.1 MGP_CASTEiJ_G0018513.1 mouse_genomes_project 11 104330964 104343769 + MGP_CASTEiJ_P0032142 Tmem106a protein_coding protein_coding MGP_CASTEiJ_T0032143.1 MGP_CASTEiJ_G0018513.1 mouse_genomes_project 11 104332811 104346671 + MGP_CASTEiJ_P0032143 Tmem106a protein_coding unknown_likely_coding MGP_CASTEiJ_T0032144.1 MGP_CASTEiJ_G0018513.1 mouse_genomes_project 11 104339431 104345641 + Tmem106a protein_coding processed_transcript MGP_CASTEiJ_T0016501.1 MGP_CASTEiJ_G0014507.1 mouse_genomes_project 11 96010944 96035451 + B230206L02Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016502.1 MGP_CASTEiJ_G0014507.1 mouse_genomes_project 11 96010961 96035451 + B230206L02Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016503.1 MGP_CASTEiJ_G0014507.1 mouse_genomes_project 11 96013120 96016310 + B230206L02Rik processed_transcript processed_transcript MGP_CASTEiJ_T0100469.1 MGP_CASTEiJ_G0037382.1 mouse_genomes_project 11 98172553 98172768 + Gm24949 snoRNA snoRNA MGP_CASTEiJ_T0100452.1 MGP_CASTEiJ_G0037365.1 mouse_genomes_project 11 71607541 71607675 - Gm23311 snoRNA snoRNA MGP_CASTEiJ_T0028284.1 MGP_CASTEiJ_G0017566.1 mouse_genomes_project 11 49641626 49651162 - MGP_CASTEiJ_P0028284 Zfp879 protein_coding protein_coding MGP_CASTEiJ_T0028285.1 MGP_CASTEiJ_G0017566.1 mouse_genomes_project 11 49641630 49651162 - MGP_CASTEiJ_P0028285 Zfp879 protein_coding protein_coding MGP_CASTEiJ_T0028286.1 MGP_CASTEiJ_G0017566.1 mouse_genomes_project 11 49641678 49651156 - MGP_CASTEiJ_P0028286 Zfp879 protein_coding protein_coding MGP_CASTEiJ_T0028287.1 MGP_CASTEiJ_G0017566.1 mouse_genomes_project 11 49643465 49651147 - MGP_CASTEiJ_P0028287 Zfp879 protein_coding unknown_likely_coding MGP_CASTEiJ_T0016462.1 MGP_CASTEiJ_G0014488.1 mouse_genomes_project 11 58995580 59003429 + 4933439C10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016463.1 MGP_CASTEiJ_G0014488.1 mouse_genomes_project 11 58995603 59001032 + 4933439C10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016464.1 MGP_CASTEiJ_G0014488.1 mouse_genomes_project 11 58996015 58996773 + 4933439C10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016465.1 MGP_CASTEiJ_G0014488.1 mouse_genomes_project 11 58996071 59000037 + 4933439C10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016466.1 MGP_CASTEiJ_G0014488.1 mouse_genomes_project 11 58996588 59000089 + 4933439C10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016467.1 MGP_CASTEiJ_G0014488.1 mouse_genomes_project 11 58997562 59001032 + 4933439C10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0006052.1 MGP_CASTEiJ_G0005066.1 mouse_genomes_project 11 31253589 31270984 + Gm12116 lincRNA lincRNA MGP_CASTEiJ_T0033865.1 MGP_CASTEiJ_G0018844.1 mouse_genomes_project 11 125593673 125611847 + MGP_CASTEiJ_P0033865 Hexdc protein_coding protein_coding MGP_CASTEiJ_T0033866.1 MGP_CASTEiJ_G0018844.1 mouse_genomes_project 11 125593675 125611839 + MGP_CASTEiJ_P0033866 Hexdc protein_coding protein_coding MGP_CASTEiJ_T0033867.1 MGP_CASTEiJ_G0018844.1 mouse_genomes_project 11 125594015 125609040 + Hexdc protein_coding processed_transcript MGP_CASTEiJ_T0033868.1 MGP_CASTEiJ_G0018844.1 mouse_genomes_project 11 125594041 125604585 + Hexdc protein_coding processed_transcript MGP_CASTEiJ_T0033869.1 MGP_CASTEiJ_G0018844.1 mouse_genomes_project 11 125595055 125611839 + MGP_CASTEiJ_P0033869 Hexdc protein_coding protein_coding MGP_CASTEiJ_T0033870.1 MGP_CASTEiJ_G0018844.1 mouse_genomes_project 11 125599350 125610170 + MGP_CASTEiJ_P0033870 Hexdc protein_coding protein_coding MGP_CASTEiJ_T0003231.1 MGP_CASTEiJ_G0002989.1 mouse_genomes_project 11 119343936 119345346 - Gm11695 antisense antisense MGP_CASTEiJ_T0032281.1 MGP_CASTEiJ_G0018538.1 mouse_genomes_project 11 105237848 105246204 + MGP_CASTEiJ_P0032281 Rundc3a protein_coding protein_coding MGP_CASTEiJ_T0032282.1 MGP_CASTEiJ_G0018538.1 mouse_genomes_project 11 105237848 105246204 + MGP_CASTEiJ_P0032282 Rundc3a protein_coding protein_coding MGP_CASTEiJ_T0032283.1 MGP_CASTEiJ_G0018538.1 mouse_genomes_project 11 105237848 105246204 + MGP_CASTEiJ_P0032283 Rundc3a protein_coding protein_coding MGP_CASTEiJ_T0032284.1 MGP_CASTEiJ_G0018538.1 mouse_genomes_project 11 105237848 105247005 + MGP_CASTEiJ_P0032284 Rundc3a protein_coding protein_coding MGP_CASTEiJ_T0032285.1 MGP_CASTEiJ_G0018538.1 mouse_genomes_project 11 105238096 105247012 + MGP_CASTEiJ_P0032285 Rundc3a protein_coding unknown_likely_coding MGP_CASTEiJ_T0032286.1 MGP_CASTEiJ_G0018538.1 mouse_genomes_project 11 105242310 105247005 + Rundc3a protein_coding retained_intron MGP_CASTEiJ_T0032287.1 MGP_CASTEiJ_G0018538.1 mouse_genomes_project 11 105242562 105244225 + Rundc3a protein_coding processed_transcript MGP_CASTEiJ_T0032288.1 MGP_CASTEiJ_G0018538.1 mouse_genomes_project 11 105243612 105246679 + Rundc3a protein_coding processed_transcript MGP_CASTEiJ_T0032289.1 MGP_CASTEiJ_G0018538.1 mouse_genomes_project 11 105244009 105246676 + Rundc3a protein_coding processed_transcript MGP_CASTEiJ_T0032290.1 MGP_CASTEiJ_G0018538.1 mouse_genomes_project 11 105244201 105246602 + Rundc3a protein_coding processed_transcript MGP_CASTEiJ_T0032291.1 MGP_CASTEiJ_G0018538.1 mouse_genomes_project 11 105244303 105245231 + Rundc3a protein_coding processed_transcript MGP_CASTEiJ_T0033625.1 MGP_CASTEiJ_G0018796.1 mouse_genomes_project 11 124529524 124594676 + MGP_CASTEiJ_P0033625 Bahcc1 protein_coding protein_coding MGP_CASTEiJ_T0033626.1 MGP_CASTEiJ_G0018796.1 mouse_genomes_project 11 124529524 124594677 + MGP_CASTEiJ_P0033626 Bahcc1 protein_coding protein_coding MGP_CASTEiJ_T0033627.1 MGP_CASTEiJ_G0018796.1 mouse_genomes_project 11 124533020 124533860 + Bahcc1 protein_coding processed_transcript MGP_CASTEiJ_T0033628.1 MGP_CASTEiJ_G0018796.1 mouse_genomes_project 11 124533274 124594676 + MGP_CASTEiJ_P0033628 Bahcc1 protein_coding protein_coding MGP_CASTEiJ_T0033629.1 MGP_CASTEiJ_G0018796.1 mouse_genomes_project 11 124590324 124594561 + Bahcc1 protein_coding processed_transcript MGP_CASTEiJ_T0009491.1 MGP_CASTEiJ_G0007679.1 mouse_genomes_project 11 99382397 99382453 - Mir7235 miRNA miRNA MGP_CASTEiJ_T0030434.1 MGP_CASTEiJ_G0018073.1 mouse_genomes_project 11 78918830 78922593 + MGP_CASTEiJ_P0030434 Tlcd1 protein_coding protein_coding MGP_CASTEiJ_T0030435.1 MGP_CASTEiJ_G0018073.1 mouse_genomes_project 11 78920249 78921742 + MGP_CASTEiJ_P0030435 Tlcd1 protein_coding protein_coding MGP_CASTEiJ_T0030436.1 MGP_CASTEiJ_G0018073.1 mouse_genomes_project 11 78920268 78922267 + Tlcd1 protein_coding processed_transcript MGP_CASTEiJ_T0030437.1 MGP_CASTEiJ_G0018073.1 mouse_genomes_project 11 78920770 78924022 + MGP_CASTEiJ_P0030437 Tlcd1 protein_coding protein_coding MGP_CASTEiJ_T0030438.1 MGP_CASTEiJ_G0018073.1 mouse_genomes_project 11 78920804 78922933 + MGP_CASTEiJ_P0030438 Tlcd1 protein_coding protein_coding MGP_CASTEiJ_T0030439.1 MGP_CASTEiJ_G0018073.1 mouse_genomes_project 11 78920850 78921727 + Tlcd1 protein_coding retained_intron MGP_CASTEiJ_T0030440.1 MGP_CASTEiJ_G0018073.1 mouse_genomes_project 11 78920881 78921988 + MGP_CASTEiJ_P0030440 Tlcd1 protein_coding protein_coding MGP_CASTEiJ_T0030441.1 MGP_CASTEiJ_G0018073.1 mouse_genomes_project 11 78921392 78922204 + Tlcd1 protein_coding retained_intron MGP_CASTEiJ_T0012373.1 MGP_CASTEiJ_G0010536.1 mouse_genomes_project 11 100386504 100386660 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003066.1 MGP_CASTEiJ_G0002857.1 mouse_genomes_project 11 56884858 56909690 - 4933424L21Rik antisense antisense MGP_CASTEiJ_T0006182.1 MGP_CASTEiJ_G0005166.1 mouse_genomes_project 11 112977635 113007673 + Gm11685 lincRNA lincRNA MGP_CASTEiJ_T0033098.1 MGP_CASTEiJ_G0018704.1 mouse_genomes_project 11 119733268 119749426 - MGP_CASTEiJ_P0033098 Caskin2 protein_coding protein_coding MGP_CASTEiJ_T0033099.1 MGP_CASTEiJ_G0018704.1 mouse_genomes_project 11 119734042 119747709 - MGP_CASTEiJ_P0033099 Caskin2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033100.1 MGP_CASTEiJ_G0018704.1 mouse_genomes_project 11 119734089 119734971 - Caskin2 protein_coding processed_transcript MGP_CASTEiJ_T0033101.1 MGP_CASTEiJ_G0018704.1 mouse_genomes_project 11 119738828 119742183 - MGP_CASTEiJ_P0033101 Caskin2 protein_coding protein_coding MGP_CASTEiJ_T0033102.1 MGP_CASTEiJ_G0018704.1 mouse_genomes_project 11 119740854 119749435 - MGP_CASTEiJ_P0033102 Caskin2 protein_coding protein_coding MGP_CASTEiJ_T0029365.1 MGP_CASTEiJ_G0017828.1 mouse_genomes_project 11 69168917 69171447 - MGP_CASTEiJ_P0029365 9130213A22Rik protein_coding protein_coding MGP_CASTEiJ_T0031786.1 MGP_CASTEiJ_G0018401.1 mouse_genomes_project 11 101932933 101937077 - MGP_CASTEiJ_P0031786 Krt10 protein_coding protein_coding MGP_CASTEiJ_T0009478.1 MGP_CASTEiJ_G0007666.1 mouse_genomes_project 11 86205079 86205134 + Gm23564 miRNA miRNA MGP_CASTEiJ_T0003149.1 MGP_CASTEiJ_G0002924.1 mouse_genomes_project 11 90520666 90550475 + Scpep1os antisense antisense MGP_CASTEiJ_T0003117.1 MGP_CASTEiJ_G0002898.1 mouse_genomes_project 11 75555272 75558125 - Gm12333 antisense antisense MGP_CASTEiJ_T0030766.1 MGP_CASTEiJ_G0018159.1 mouse_genomes_project 11 84644172 84680476 + MGP_CASTEiJ_P0030766 Taf15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030767.1 MGP_CASTEiJ_G0018159.1 mouse_genomes_project 11 84644173 84661322 + Taf15 protein_coding processed_transcript MGP_CASTEiJ_T0030768.1 MGP_CASTEiJ_G0018159.1 mouse_genomes_project 11 84644179 84688449 + MGP_CASTEiJ_P0030768 Taf15 protein_coding protein_coding MGP_CASTEiJ_T0030769.1 MGP_CASTEiJ_G0018159.1 mouse_genomes_project 11 84644198 84654472 + Taf15 protein_coding retained_intron MGP_CASTEiJ_T0030770.1 MGP_CASTEiJ_G0018159.1 mouse_genomes_project 11 84644202 84661154 + Taf15 protein_coding processed_transcript MGP_CASTEiJ_T0030771.1 MGP_CASTEiJ_G0018159.1 mouse_genomes_project 11 84661135 84688449 + MGP_CASTEiJ_P0030771 Taf15 protein_coding protein_coding MGP_CASTEiJ_T0030772.1 MGP_CASTEiJ_G0018159.1 mouse_genomes_project 11 84682352 84688451 + MGP_CASTEiJ_P0030772 Taf15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030773.1 MGP_CASTEiJ_G0018159.1 mouse_genomes_project 11 84682352 84688451 + MGP_CASTEiJ_P0030773 Taf15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028369.1 MGP_CASTEiJ_G0017587.1 mouse_genomes_project 11 50540861 50548656 - MGP_CASTEiJ_P0028369 N4bp3 protein_coding protein_coding MGP_CASTEiJ_T0028370.1 MGP_CASTEiJ_G0017587.1 mouse_genomes_project 11 50543352 50548651 - MGP_CASTEiJ_P0028370 N4bp3 protein_coding protein_coding MGP_CASTEiJ_T0028371.1 MGP_CASTEiJ_G0017587.1 mouse_genomes_project 11 50543417 50548634 - MGP_CASTEiJ_P0028371 N4bp3 protein_coding protein_coding MGP_CASTEiJ_T0029027.1 MGP_CASTEiJ_G0017756.1 mouse_genomes_project 11 61361841 61393971 - MGP_CASTEiJ_P0029027 Prpsap2 protein_coding protein_coding MGP_CASTEiJ_T0029028.1 MGP_CASTEiJ_G0017756.1 mouse_genomes_project 11 61361845 61393895 - Prpsap2 protein_coding processed_transcript MGP_CASTEiJ_T0029029.1 MGP_CASTEiJ_G0017756.1 mouse_genomes_project 11 61361845 61393945 - MGP_CASTEiJ_P0029029 Prpsap2 protein_coding protein_coding MGP_CASTEiJ_T0029030.1 MGP_CASTEiJ_G0017756.1 mouse_genomes_project 11 61387546 61393923 - Prpsap2 protein_coding processed_transcript MGP_CASTEiJ_T0006101.1 MGP_CASTEiJ_G0005108.1 mouse_genomes_project 11 70809189 70813359 - lincRNA lincRNA MGP_CASTEiJ_T0031373.1 MGP_CASTEiJ_G0018300.1 mouse_genomes_project 11 97957570 97966176 + MGP_CASTEiJ_P0031373 Gngt2 protein_coding protein_coding MGP_CASTEiJ_T0031374.1 MGP_CASTEiJ_G0018300.1 mouse_genomes_project 11 97962661 97966176 + MGP_CASTEiJ_P0031374 Gngt2 protein_coding protein_coding MGP_CASTEiJ_T0031375.1 MGP_CASTEiJ_G0018300.1 mouse_genomes_project 11 97962675 97966176 + MGP_CASTEiJ_P0031375 Gngt2 protein_coding protein_coding MGP_CASTEiJ_T0031376.1 MGP_CASTEiJ_G0018300.1 mouse_genomes_project 11 97963027 97966176 + MGP_CASTEiJ_P0031376 Gngt2 protein_coding protein_coding MGP_CASTEiJ_T0031377.1 MGP_CASTEiJ_G0018300.1 mouse_genomes_project 11 97963029 97966176 + MGP_CASTEiJ_P0031377 Gngt2 protein_coding protein_coding MGP_CASTEiJ_T0031378.1 MGP_CASTEiJ_G0018300.1 mouse_genomes_project 11 97963602 97966176 + MGP_CASTEiJ_P0031378 Gngt2 protein_coding protein_coding MGP_CASTEiJ_T0031379.1 MGP_CASTEiJ_G0018300.1 mouse_genomes_project 11 97963979 97966176 + MGP_CASTEiJ_P0031379 Gngt2 protein_coding protein_coding MGP_CASTEiJ_T0006152.1 MGP_CASTEiJ_G0005144.1 mouse_genomes_project 11 90961043 90968929 + Gm2018 lincRNA lincRNA MGP_CASTEiJ_T0012162.1 MGP_CASTEiJ_G0010325.1 mouse_genomes_project 11 17518710 17518930 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030058.1 MGP_CASTEiJ_G0018001.1 mouse_genomes_project 11 74852253 75062735 - MGP_CASTEiJ_P0030058 Rap1gap2 protein_coding protein_coding MGP_CASTEiJ_T0030059.1 MGP_CASTEiJ_G0018001.1 mouse_genomes_project 11 74852380 75062707 - MGP_CASTEiJ_P0030059 Rap1gap2 protein_coding protein_coding MGP_CASTEiJ_T0030060.1 MGP_CASTEiJ_G0018001.1 mouse_genomes_project 11 74852381 74877869 - Rap1gap2 protein_coding processed_transcript MGP_CASTEiJ_T0030061.1 MGP_CASTEiJ_G0018001.1 mouse_genomes_project 11 74854833 74995027 - MGP_CASTEiJ_P0030061 Rap1gap2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030062.1 MGP_CASTEiJ_G0018001.1 mouse_genomes_project 11 74856320 74995057 - MGP_CASTEiJ_P0030062 Rap1gap2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030063.1 MGP_CASTEiJ_G0018001.1 mouse_genomes_project 11 74856320 74995057 - MGP_CASTEiJ_P0030063 Rap1gap2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030064.1 MGP_CASTEiJ_G0018001.1 mouse_genomes_project 11 74856320 74995057 - MGP_CASTEiJ_P0030064 Rap1gap2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030065.1 MGP_CASTEiJ_G0018001.1 mouse_genomes_project 11 74874704 74995060 - MGP_CASTEiJ_P0030065 Rap1gap2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030066.1 MGP_CASTEiJ_G0018001.1 mouse_genomes_project 11 74908072 75062673 - MGP_CASTEiJ_P0030066 Rap1gap2 protein_coding protein_coding MGP_CASTEiJ_T0012149.1 MGP_CASTEiJ_G0010312.1 mouse_genomes_project 11 14331379 14335613 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102011.1 MGP_CASTEiJ_G0038736.1 mouse_genomes_project 11 102492494 102492727 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0030343.1 MGP_CASTEiJ_G0018057.1 mouse_genomes_project 11 78171930 78176874 + MGP_CASTEiJ_P0030343 Abhd15 protein_coding protein_coding MGP_CASTEiJ_T0030344.1 MGP_CASTEiJ_G0018057.1 mouse_genomes_project 11 78171944 78189416 + MGP_CASTEiJ_P0030344 Abhd15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030345.1 MGP_CASTEiJ_G0018057.1 mouse_genomes_project 11 78172793 78197830 + MGP_CASTEiJ_P0030345 Abhd15 protein_coding protein_coding MGP_CASTEiJ_T0030347.1 MGP_CASTEiJ_G0018057.1 mouse_genomes_project 11 78175442 78197828 + MGP_CASTEiJ_P0030347 Abhd15 protein_coding protein_coding MGP_CASTEiJ_T0032180.1 MGP_CASTEiJ_G0018522.1 mouse_genomes_project 11 104794414 104821620 - Mpp3 protein_coding processed_transcript MGP_CASTEiJ_T0032181.1 MGP_CASTEiJ_G0018522.1 mouse_genomes_project 11 104794414 104821641 - MGP_CASTEiJ_P0032181 Mpp3 protein_coding protein_coding MGP_CASTEiJ_T0032182.1 MGP_CASTEiJ_G0018522.1 mouse_genomes_project 11 104794414 104820779 - MGP_CASTEiJ_P0032182 Mpp3 protein_coding protein_coding MGP_CASTEiJ_T0032183.1 MGP_CASTEiJ_G0018522.1 mouse_genomes_project 11 104794414 104824541 - MGP_CASTEiJ_P0032183 Mpp3 protein_coding protein_coding MGP_CASTEiJ_T0032184.1 MGP_CASTEiJ_G0018522.1 mouse_genomes_project 11 104794422 104821636 - MGP_CASTEiJ_P0032184 Mpp3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032185.1 MGP_CASTEiJ_G0018522.1 mouse_genomes_project 11 104794422 104821636 - MGP_CASTEiJ_P0032185 Mpp3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032186.1 MGP_CASTEiJ_G0018522.1 mouse_genomes_project 11 104803222 104805006 - Mpp3 protein_coding retained_intron MGP_CASTEiJ_T0032187.1 MGP_CASTEiJ_G0018522.1 mouse_genomes_project 11 104812033 104821623 - MGP_CASTEiJ_P0032187 Mpp3 protein_coding protein_coding MGP_CASTEiJ_T0032188.1 MGP_CASTEiJ_G0018522.1 mouse_genomes_project 11 104815808 104821620 - Mpp3 protein_coding processed_transcript MGP_CASTEiJ_T0032189.1 MGP_CASTEiJ_G0018522.1 mouse_genomes_project 11 104818109 104820542 - Mpp3 protein_coding processed_transcript MGP_CASTEiJ_T0032190.1 MGP_CASTEiJ_G0018522.1 mouse_genomes_project 11 104820071 104821441 - Mpp3 protein_coding processed_transcript MGP_CASTEiJ_T0031126.1 MGP_CASTEiJ_G0018245.1 mouse_genomes_project 11 91668444 91689606 - MGP_CASTEiJ_P0031126 Pctp protein_coding protein_coding MGP_CASTEiJ_T0031670.1 MGP_CASTEiJ_G0018371.1 mouse_genomes_project 11 100832407 100918607 - MGP_CASTEiJ_P0031670 Ikzf3 protein_coding protein_coding MGP_CASTEiJ_T0031671.1 MGP_CASTEiJ_G0018371.1 mouse_genomes_project 11 100834765 100846052 - Ikzf3 protein_coding processed_transcript MGP_CASTEiJ_T0031672.1 MGP_CASTEiJ_G0018371.1 mouse_genomes_project 11 100852939 100859594 - Ikzf3 protein_coding processed_transcript MGP_CASTEiJ_T0031673.1 MGP_CASTEiJ_G0018371.1 mouse_genomes_project 11 100884906 100918838 - Ikzf3 protein_coding retained_intron MGP_CASTEiJ_T0028136.1 MGP_CASTEiJ_G0017527.1 mouse_genomes_project 11 47629475 47637614 - MGP_CASTEiJ_P0028136 9930111J21Rik2 protein_coding protein_coding MGP_CASTEiJ_T0032466.1 MGP_CASTEiJ_G0018570.1 mouse_genomes_project 11 106578562 106586426 - MGP_CASTEiJ_P0032466 Lyzl6 protein_coding protein_coding MGP_CASTEiJ_T0032467.1 MGP_CASTEiJ_G0018570.1 mouse_genomes_project 11 106578565 106586437 - MGP_CASTEiJ_P0032467 Lyzl6 protein_coding protein_coding MGP_CASTEiJ_T0032468.1 MGP_CASTEiJ_G0018570.1 mouse_genomes_project 11 106578568 106582515 - Lyzl6 protein_coding processed_transcript MGP_CASTEiJ_T0012190.1 MGP_CASTEiJ_G0010353.1 mouse_genomes_project 11 25199837 25200558 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016516.1 MGP_CASTEiJ_G0014515.1 mouse_genomes_project 11 99878878 99904200 + 2410003L11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016517.1 MGP_CASTEiJ_G0014515.1 mouse_genomes_project 11 99895438 99901289 + 2410003L11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0012140.1 MGP_CASTEiJ_G0010303.1 mouse_genomes_project 11 11772293 11772696 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032019.1 MGP_CASTEiJ_G0018490.1 mouse_genomes_project 11 103890034 103897819 + Cntnap1 protein_coding processed_transcript MGP_CASTEiJ_T0032021.1 MGP_CASTEiJ_G0018490.1 mouse_genomes_project 11 103895573 103911508 + MGP_CASTEiJ_P0032021 Cntnap1 protein_coding protein_coding MGP_CASTEiJ_T0032022.1 MGP_CASTEiJ_G0018490.1 mouse_genomes_project 11 103895726 103908408 + MGP_CASTEiJ_P0032022 Cntnap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029218.1 MGP_CASTEiJ_G0017797.1 mouse_genomes_project 11 67178624 67201078 + MGP_CASTEiJ_P0029218 Myh4 protein_coding protein_coding MGP_CASTEiJ_T0029219.1 MGP_CASTEiJ_G0017797.1 mouse_genomes_project 11 67181181 67201037 + MGP_CASTEiJ_P0029219 Myh4 protein_coding protein_coding MGP_CASTEiJ_T0028754.1 MGP_CASTEiJ_G0017700.1 mouse_genomes_project 11 58633431 58641126 - MGP_CASTEiJ_P0028754 Gjc2 protein_coding protein_coding MGP_CASTEiJ_T0028755.1 MGP_CASTEiJ_G0017700.1 mouse_genomes_project 11 58633431 58640739 - MGP_CASTEiJ_P0028755 Gjc2 protein_coding protein_coding MGP_CASTEiJ_T0029091.1 MGP_CASTEiJ_G0017764.1 mouse_genomes_project 11 62153229 62221806 + MGP_CASTEiJ_P0029091 Pigl protein_coding protein_coding MGP_CASTEiJ_T0029092.1 MGP_CASTEiJ_G0017764.1 mouse_genomes_project 11 62153422 62215911 + Pigl protein_coding processed_transcript MGP_CASTEiJ_T0006218.1 MGP_CASTEiJ_G0005194.1 mouse_genomes_project 11 124812438 124814721 - Gm16755 lincRNA lincRNA MGP_CASTEiJ_T0006104.1 MGP_CASTEiJ_G0005111.1 mouse_genomes_project 11 71270300 71271874 - 6330403K07Rik lincRNA lincRNA MGP_CASTEiJ_T0033161.1 MGP_CASTEiJ_G0018714.1 mouse_genomes_project 11 119979378 119986416 - MGP_CASTEiJ_P0033161 H3f3b protein_coding protein_coding MGP_CASTEiJ_T0033162.1 MGP_CASTEiJ_G0018714.1 mouse_genomes_project 11 119980482 119982730 - H3f3b protein_coding processed_transcript MGP_CASTEiJ_T0028134.1 MGP_CASTEiJ_G0017525.1 mouse_genomes_project 11 47621385 47637597 - MGP_CASTEiJ_P0028134 protein_coding protein_coding MGP_CASTEiJ_T0031986.1 MGP_CASTEiJ_G0018481.1 mouse_genomes_project 11 103780919 103788359 + MGP_CASTEiJ_P0031986 Naglu protein_coding protein_coding MGP_CASTEiJ_T0031987.1 MGP_CASTEiJ_G0018481.1 mouse_genomes_project 11 103782458 103787255 + Naglu protein_coding processed_transcript MGP_CASTEiJ_T0031988.1 MGP_CASTEiJ_G0018481.1 mouse_genomes_project 11 103782866 103787490 + Naglu protein_coding processed_transcript MGP_CASTEiJ_T0012248.1 MGP_CASTEiJ_G0010411.1 mouse_genomes_project 11 52579781 52580357 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031828.1 MGP_CASTEiJ_G0018441.1 mouse_genomes_project 11 102663007 102667230 - MGP_CASTEiJ_P0031828 Krt34 protein_coding protein_coding MGP_CASTEiJ_T0028931.1 MGP_CASTEiJ_G0017739.1 mouse_genomes_project 11 60474165 60508873 - MGP_CASTEiJ_P0028931 Natd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028932.1 MGP_CASTEiJ_G0017739.1 mouse_genomes_project 11 60497628 60508934 - MGP_CASTEiJ_P0028932 Natd1 protein_coding protein_coding MGP_CASTEiJ_T0028933.1 MGP_CASTEiJ_G0017739.1 mouse_genomes_project 11 60501340 60509874 - Natd1 protein_coding processed_transcript MGP_CASTEiJ_T0028514.1 MGP_CASTEiJ_G0017626.1 mouse_genomes_project 11 53188871 53202870 - MGP_CASTEiJ_P0028514 Pdlim4 protein_coding protein_coding MGP_CASTEiJ_T0028515.1 MGP_CASTEiJ_G0017626.1 mouse_genomes_project 11 53188871 53202885 - MGP_CASTEiJ_P0028515 Pdlim4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028516.1 MGP_CASTEiJ_G0017626.1 mouse_genomes_project 11 53189864 53198594 - MGP_CASTEiJ_P0028516 Pdlim4 protein_coding protein_coding MGP_CASTEiJ_T0028517.1 MGP_CASTEiJ_G0017626.1 mouse_genomes_project 11 53192751 53202824 - Pdlim4 protein_coding retained_intron MGP_CASTEiJ_T0028518.1 MGP_CASTEiJ_G0017626.1 mouse_genomes_project 11 53197520 53198366 - Pdlim4 protein_coding processed_transcript MGP_CASTEiJ_T0033289.1 MGP_CASTEiJ_G0018736.1 mouse_genomes_project 11 120608880 120620669 + Aanat protein_coding processed_transcript MGP_CASTEiJ_T0033290.1 MGP_CASTEiJ_G0018736.1 mouse_genomes_project 11 120617031 120621017 + MGP_CASTEiJ_P0033290 Aanat protein_coding protein_coding MGP_CASTEiJ_T0033291.1 MGP_CASTEiJ_G0018736.1 mouse_genomes_project 11 120617031 120620882 + MGP_CASTEiJ_P0033291 Aanat protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033292.1 MGP_CASTEiJ_G0018736.1 mouse_genomes_project 11 120618901 120620882 + MGP_CASTEiJ_P0033292 Aanat protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033293.1 MGP_CASTEiJ_G0018736.1 mouse_genomes_project 11 120619096 120619600 + Aanat protein_coding processed_transcript MGP_CASTEiJ_T0028143.1 MGP_CASTEiJ_G0017531.1 mouse_genomes_project 11 47775041 47800244 + MGP_CASTEiJ_P0028143 protein_coding protein_coding MGP_CASTEiJ_T0027978.1 MGP_CASTEiJ_G0017483.1 mouse_genomes_project 11 40223447 40326852 - MGP_CASTEiJ_P0027978 Gabrg2 protein_coding protein_coding MGP_CASTEiJ_T0027979.1 MGP_CASTEiJ_G0017483.1 mouse_genomes_project 11 40224954 40326527 - MGP_CASTEiJ_P0027979 Gabrg2 protein_coding protein_coding MGP_CASTEiJ_T0027980.1 MGP_CASTEiJ_G0017483.1 mouse_genomes_project 11 40224956 40230357 - Gabrg2 protein_coding retained_intron MGP_CASTEiJ_T0027981.1 MGP_CASTEiJ_G0017483.1 mouse_genomes_project 11 40228303 40326351 - MGP_CASTEiJ_P0027981 Gabrg2 protein_coding protein_coding MGP_CASTEiJ_T0099214.1 MGP_CASTEiJ_G0036127.1 mouse_genomes_project 11 4967491 4967565 - Gm27393 snRNA snRNA MGP_CASTEiJ_T0012364.1 MGP_CASTEiJ_G0010527.1 mouse_genomes_project 11 97852467 97852775 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032477.1 MGP_CASTEiJ_G0018575.1 mouse_genomes_project 11 106785608 106923708 - MGP_CASTEiJ_P0032477 Nsf protein_coding protein_coding MGP_CASTEiJ_T0032478.1 MGP_CASTEiJ_G0018575.1 mouse_genomes_project 11 106786751 106790908 - Nsf protein_coding retained_intron MGP_CASTEiJ_T0032479.1 MGP_CASTEiJ_G0018575.1 mouse_genomes_project 11 106786760 106787910 - Nsf protein_coding retained_intron MGP_CASTEiJ_T0032480.1 MGP_CASTEiJ_G0018575.1 mouse_genomes_project 11 106811123 106834976 - Nsf protein_coding retained_intron MGP_CASTEiJ_T0032481.1 MGP_CASTEiJ_G0018575.1 mouse_genomes_project 11 106824827 106835098 - Nsf protein_coding retained_intron MGP_CASTEiJ_T0032482.1 MGP_CASTEiJ_G0018575.1 mouse_genomes_project 11 106847104 106923676 - Nsf protein_coding retained_intron MGP_CASTEiJ_T0032483.1 MGP_CASTEiJ_G0018575.1 mouse_genomes_project 11 106877683 106923676 - Nsf protein_coding retained_intron MGP_CASTEiJ_T0032484.1 MGP_CASTEiJ_G0018575.1 mouse_genomes_project 11 106878735 106906729 - MGP_CASTEiJ_P0032484 Nsf protein_coding protein_coding MGP_CASTEiJ_T0032485.1 MGP_CASTEiJ_G0018575.1 mouse_genomes_project 11 106878839 106895440 - Nsf protein_coding retained_intron MGP_CASTEiJ_T0032486.1 MGP_CASTEiJ_G0018575.1 mouse_genomes_project 11 106895436 106906729 - MGP_CASTEiJ_P0032486 Nsf protein_coding protein_coding MGP_CASTEiJ_T0006160.1 MGP_CASTEiJ_G0005150.1 mouse_genomes_project 11 97807576 97809548 - Gm9796 lincRNA lincRNA MGP_CASTEiJ_T0033649.1 MGP_CASTEiJ_G0018802.1 mouse_genomes_project 11 124760447 124765760 + MGP_CASTEiJ_P0033649 Tspan10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033650.1 MGP_CASTEiJ_G0018802.1 mouse_genomes_project 11 124760447 124765620 + MGP_CASTEiJ_P0033650 Tspan10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033651.1 MGP_CASTEiJ_G0018802.1 mouse_genomes_project 11 124760447 124765620 + MGP_CASTEiJ_P0033651 Tspan10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033652.1 MGP_CASTEiJ_G0018802.1 mouse_genomes_project 11 124761944 124766273 + MGP_CASTEiJ_P0033652 Tspan10 protein_coding protein_coding MGP_CASTEiJ_T0033653.1 MGP_CASTEiJ_G0018802.1 mouse_genomes_project 11 124761971 124763632 + Tspan10 protein_coding processed_transcript MGP_CASTEiJ_T0003089.1 MGP_CASTEiJ_G0002876.1 mouse_genomes_project 11 62490805 62494179 - antisense antisense MGP_CASTEiJ_T0003009.1 MGP_CASTEiJ_G0002807.1 mouse_genomes_project 11 2429653 2436209 + Gm11963 antisense antisense MGP_CASTEiJ_T0032342.1 MGP_CASTEiJ_G0018546.1 mouse_genomes_project 11 105540464 105553529 + MGP_CASTEiJ_P0032342 Meioc protein_coding protein_coding MGP_CASTEiJ_T0032343.1 MGP_CASTEiJ_G0018546.1 mouse_genomes_project 11 105542352 105560481 + MGP_CASTEiJ_P0032343 Meioc protein_coding protein_coding MGP_CASTEiJ_T0032344.1 MGP_CASTEiJ_G0018546.1 mouse_genomes_project 11 105542390 105552345 + Meioc protein_coding processed_transcript MGP_CASTEiJ_T0029254.1 MGP_CASTEiJ_G0017806.1 mouse_genomes_project 11 67888148 67913745 - Cfap52 protein_coding processed_transcript MGP_CASTEiJ_T0029255.1 MGP_CASTEiJ_G0017806.1 mouse_genomes_project 11 67888150 67933668 - MGP_CASTEiJ_P0029255 Cfap52 protein_coding protein_coding MGP_CASTEiJ_T0029256.1 MGP_CASTEiJ_G0017806.1 mouse_genomes_project 11 67888313 67894317 - Cfap52 protein_coding processed_transcript MGP_CASTEiJ_T0029257.1 MGP_CASTEiJ_G0017806.1 mouse_genomes_project 11 67905552 67933677 - MGP_CASTEiJ_P0029257 Cfap52 protein_coding protein_coding MGP_CASTEiJ_T0030565.1 MGP_CASTEiJ_G0018105.1 mouse_genomes_project 11 80186385 80191884 + Nf1 protein_coding processed_transcript MGP_CASTEiJ_T0030566.1 MGP_CASTEiJ_G0018105.1 mouse_genomes_project 11 80186484 80439484 + MGP_CASTEiJ_P0030566 Nf1 protein_coding protein_coding MGP_CASTEiJ_T0030567.1 MGP_CASTEiJ_G0018105.1 mouse_genomes_project 11 80186517 80442164 + MGP_CASTEiJ_P0030567 Nf1 protein_coding protein_coding MGP_CASTEiJ_T0030568.1 MGP_CASTEiJ_G0018105.1 mouse_genomes_project 11 80186579 80286646 + Nf1 protein_coding retained_intron MGP_CASTEiJ_T0030569.1 MGP_CASTEiJ_G0018105.1 mouse_genomes_project 11 80186692 80333108 + MGP_CASTEiJ_P0030569 Nf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030570.1 MGP_CASTEiJ_G0018105.1 mouse_genomes_project 11 80186692 80333985 + MGP_CASTEiJ_P0030570 Nf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030571.1 MGP_CASTEiJ_G0018105.1 mouse_genomes_project 11 80303988 80330512 + Nf1 protein_coding processed_transcript MGP_CASTEiJ_T0030572.1 MGP_CASTEiJ_G0018105.1 mouse_genomes_project 11 80303988 80330512 + Nf1 protein_coding processed_transcript MGP_CASTEiJ_T0030582.1 MGP_CASTEiJ_G0018105.1 mouse_genomes_project 11 80394663 80408356 + MGP_CASTEiJ_P0030582 Nf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030583.1 MGP_CASTEiJ_G0018105.1 mouse_genomes_project 11 80397547 80430658 + Nf1 protein_coding retained_intron MGP_CASTEiJ_T0030584.1 MGP_CASTEiJ_G0018105.1 mouse_genomes_project 11 80406931 80440590 + MGP_CASTEiJ_P0030584 Nf1 protein_coding protein_coding MGP_CASTEiJ_T0029487.1 MGP_CASTEiJ_G0017856.1 mouse_genomes_project 11 69782355 69797594 - MGP_CASTEiJ_P0029487 Tnfsfm13 protein_coding protein_coding MGP_CASTEiJ_T0029490.1 MGP_CASTEiJ_G0017856.1 mouse_genomes_project 11 69782826 69797306 - MGP_CASTEiJ_P0029490 Tnfsfm13 protein_coding protein_coding MGP_CASTEiJ_T0029491.1 MGP_CASTEiJ_G0017856.1 mouse_genomes_project 11 69783009 69797305 - MGP_CASTEiJ_P0029491 Tnfsfm13 protein_coding protein_coding MGP_CASTEiJ_T0029664.1 MGP_CASTEiJ_G0017894.1 mouse_genomes_project 11 70370430 70375869 - MGP_CASTEiJ_P0029664 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029665.1 MGP_CASTEiJ_G0017894.1 mouse_genomes_project 11 70374854 70375993 - MGP_CASTEiJ_P0029665 protein_coding protein_coding MGP_CASTEiJ_T0029666.1 MGP_CASTEiJ_G0017894.1 mouse_genomes_project 11 70374923 70376114 - protein_coding retained_intron MGP_CASTEiJ_T0012208.1 MGP_CASTEiJ_G0010371.1 mouse_genomes_project 11 29054499 29055278 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003195.1 MGP_CASTEiJ_G0002959.1 mouse_genomes_project 11 104950319 104951017 - Gm11586 antisense antisense MGP_CASTEiJ_T0029441.1 MGP_CASTEiJ_G0017849.1 mouse_genomes_project 11 69709700 69711539 + MGP_CASTEiJ_P0029441 Sat2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029442.1 MGP_CASTEiJ_G0017849.1 mouse_genomes_project 11 69709718 69711550 + MGP_CASTEiJ_P0029442 Sat2 protein_coding protein_coding MGP_CASTEiJ_T0029443.1 MGP_CASTEiJ_G0017849.1 mouse_genomes_project 11 69709746 69711138 + Sat2 protein_coding retained_intron MGP_CASTEiJ_T0029444.1 MGP_CASTEiJ_G0017849.1 mouse_genomes_project 11 69709746 69711550 + MGP_CASTEiJ_P0029444 Sat2 protein_coding protein_coding MGP_CASTEiJ_T0100441.1 MGP_CASTEiJ_G0037354.1 mouse_genomes_project 11 58035153 58035285 + Gm22599 snoRNA snoRNA MGP_CASTEiJ_T0012157.1 MGP_CASTEiJ_G0010320.1 mouse_genomes_project 11 16688979 16689123 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003025.1 MGP_CASTEiJ_G0002819.1 mouse_genomes_project 11 21479587 21480516 + Gm12061 antisense antisense MGP_CASTEiJ_T0099244.1 MGP_CASTEiJ_G0036157.1 mouse_genomes_project 11 71233488 71233594 - Gm22297 snRNA snRNA MGP_CASTEiJ_T0032560.1 MGP_CASTEiJ_G0018590.1 mouse_genomes_project 11 108671249 108865348 + MGP_CASTEiJ_P0032560 Tanc2 protein_coding protein_coding MGP_CASTEiJ_T0032561.1 MGP_CASTEiJ_G0018590.1 mouse_genomes_project 11 108671254 109013990 + MGP_CASTEiJ_P0032561 Tanc2 protein_coding protein_coding MGP_CASTEiJ_T0032562.1 MGP_CASTEiJ_G0018590.1 mouse_genomes_project 11 108671315 109011351 + MGP_CASTEiJ_P0032562 Tanc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032563.1 MGP_CASTEiJ_G0018590.1 mouse_genomes_project 11 108707466 108798499 + Tanc2 protein_coding processed_transcript MGP_CASTEiJ_T0032564.1 MGP_CASTEiJ_G0018590.1 mouse_genomes_project 11 108796484 108797775 + MGP_CASTEiJ_P0032564 Tanc2 protein_coding protein_coding MGP_CASTEiJ_T0032565.1 MGP_CASTEiJ_G0018590.1 mouse_genomes_project 11 108980035 109008804 + MGP_CASTEiJ_P0032565 Tanc2 protein_coding protein_coding MGP_CASTEiJ_T0032566.1 MGP_CASTEiJ_G0018590.1 mouse_genomes_project 11 108983030 109009399 + MGP_CASTEiJ_P0032566 Tanc2 protein_coding protein_coding MGP_CASTEiJ_T0032567.1 MGP_CASTEiJ_G0018590.1 mouse_genomes_project 11 108985102 108999203 + Tanc2 protein_coding processed_transcript MGP_CASTEiJ_T0031091.1 MGP_CASTEiJ_G0018235.1 mouse_genomes_project 11 90414604 90475926 - MGP_CASTEiJ_P0031091 Akap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031092.1 MGP_CASTEiJ_G0018235.1 mouse_genomes_project 11 90414604 90475926 - MGP_CASTEiJ_P0031092 Akap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031093.1 MGP_CASTEiJ_G0018235.1 mouse_genomes_project 11 90414604 90475926 - MGP_CASTEiJ_P0031093 Akap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031094.1 MGP_CASTEiJ_G0018235.1 mouse_genomes_project 11 90437235 90460671 - MGP_CASTEiJ_P0031094 Akap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031095.1 MGP_CASTEiJ_G0018235.1 mouse_genomes_project 11 90437235 90475921 - MGP_CASTEiJ_P0031095 Akap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031096.1 MGP_CASTEiJ_G0018235.1 mouse_genomes_project 11 90437235 90460671 - MGP_CASTEiJ_P0031096 Akap1 protein_coding protein_coding MGP_CASTEiJ_T0031097.1 MGP_CASTEiJ_G0018235.1 mouse_genomes_project 11 90437235 90475950 - MGP_CASTEiJ_P0031097 Akap1 protein_coding protein_coding MGP_CASTEiJ_T0031098.1 MGP_CASTEiJ_G0018235.1 mouse_genomes_project 11 90438198 90475081 - MGP_CASTEiJ_P0031098 Akap1 protein_coding protein_coding MGP_CASTEiJ_T0031099.1 MGP_CASTEiJ_G0018235.1 mouse_genomes_project 11 90444281 90450807 - Akap1 protein_coding retained_intron MGP_CASTEiJ_T0031100.1 MGP_CASTEiJ_G0018235.1 mouse_genomes_project 11 90446241 90453747 - MGP_CASTEiJ_P0031100 Akap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012289.1 MGP_CASTEiJ_G0010452.1 mouse_genomes_project 11 65031385 65031982 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099234.1 MGP_CASTEiJ_G0036147.1 mouse_genomes_project 11 53605660 53605769 + Gm24198 snRNA snRNA MGP_CASTEiJ_T0032491.1 MGP_CASTEiJ_G0018578.1 mouse_genomes_project 11 107180366 107182585 + MGP_CASTEiJ_P0032491 Sppl2c protein_coding protein_coding MGP_CASTEiJ_T0032492.1 MGP_CASTEiJ_G0018578.1 mouse_genomes_project 11 107180366 107185147 + MGP_CASTEiJ_P0032492 Sppl2c protein_coding protein_coding MGP_CASTEiJ_T0006178.1 MGP_CASTEiJ_G0005162.1 mouse_genomes_project 11 105871686 105877785 - 2410004I01Rik lincRNA lincRNA MGP_CASTEiJ_T0028576.1 MGP_CASTEiJ_G0017638.1 mouse_genomes_project 11 54072005 54119336 - MGP_CASTEiJ_P0028576 Tnip1 protein_coding protein_coding MGP_CASTEiJ_T0028577.1 MGP_CASTEiJ_G0017638.1 mouse_genomes_project 11 54072007 54119318 - Tnip1 protein_coding processed_transcript MGP_CASTEiJ_T0028578.1 MGP_CASTEiJ_G0017638.1 mouse_genomes_project 11 54072007 54126147 - MGP_CASTEiJ_P0028578 Tnip1 protein_coding protein_coding MGP_CASTEiJ_T0028579.1 MGP_CASTEiJ_G0017638.1 mouse_genomes_project 11 54072007 54126143 - MGP_CASTEiJ_P0028579 Tnip1 protein_coding protein_coding MGP_CASTEiJ_T0028580.1 MGP_CASTEiJ_G0017638.1 mouse_genomes_project 11 54072007 54126148 - MGP_CASTEiJ_P0028580 Tnip1 protein_coding protein_coding MGP_CASTEiJ_T0028581.1 MGP_CASTEiJ_G0017638.1 mouse_genomes_project 11 54072007 54126141 - MGP_CASTEiJ_P0028581 Tnip1 protein_coding protein_coding MGP_CASTEiJ_T0028582.1 MGP_CASTEiJ_G0017638.1 mouse_genomes_project 11 54072009 54126140 - MGP_CASTEiJ_P0028582 Tnip1 protein_coding protein_coding MGP_CASTEiJ_T0028583.1 MGP_CASTEiJ_G0017638.1 mouse_genomes_project 11 54079831 54082347 - Tnip1 protein_coding retained_intron MGP_CASTEiJ_T0028584.1 MGP_CASTEiJ_G0017638.1 mouse_genomes_project 11 54087975 54119336 - MGP_CASTEiJ_P0028584 Tnip1 protein_coding protein_coding MGP_CASTEiJ_T0028585.1 MGP_CASTEiJ_G0017638.1 mouse_genomes_project 11 54095326 54119261 - MGP_CASTEiJ_P0028585 Tnip1 protein_coding protein_coding MGP_CASTEiJ_T0028586.1 MGP_CASTEiJ_G0017638.1 mouse_genomes_project 11 54101875 54119301 - Tnip1 protein_coding processed_transcript MGP_CASTEiJ_T0028587.1 MGP_CASTEiJ_G0017638.1 mouse_genomes_project 11 54101929 54126140 - Tnip1 protein_coding processed_transcript MGP_CASTEiJ_T0030422.1 MGP_CASTEiJ_G0018071.1 mouse_genomes_project 11 78900694 78907811 - Traf4 protein_coding retained_intron MGP_CASTEiJ_T0030423.1 MGP_CASTEiJ_G0018071.1 mouse_genomes_project 11 78901591 78907811 - MGP_CASTEiJ_P0030423 Traf4 protein_coding protein_coding MGP_CASTEiJ_T0030424.1 MGP_CASTEiJ_G0018071.1 mouse_genomes_project 11 78902057 78907724 - MGP_CASTEiJ_P0030424 Traf4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030425.1 MGP_CASTEiJ_G0018071.1 mouse_genomes_project 11 78902993 78907738 - Traf4 protein_coding retained_intron MGP_CASTEiJ_T0012316.1 MGP_CASTEiJ_G0010479.1 mouse_genomes_project 11 75591993 75592389 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030211.1 MGP_CASTEiJ_G0018030.1 mouse_genomes_project 11 76340240 76367398 - MGP_CASTEiJ_P0030211 Doc2b protein_coding protein_coding MGP_CASTEiJ_T0030212.1 MGP_CASTEiJ_G0018030.1 mouse_genomes_project 11 76343150 76367317 - MGP_CASTEiJ_P0030212 Doc2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0009406.1 MGP_CASTEiJ_G0007594.1 mouse_genomes_project 11 3479115 3479168 - Gm22123 miRNA miRNA MGP_CASTEiJ_T0006212.1 MGP_CASTEiJ_G0005188.1 mouse_genomes_project 11 123293224 123297543 + Gm26508 lincRNA lincRNA MGP_CASTEiJ_T0028184.1 MGP_CASTEiJ_G0017540.1 mouse_genomes_project 11 48008024 48011347 - MGP_CASTEiJ_P0028184 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0028394.1 MGP_CASTEiJ_G0017596.1 mouse_genomes_project 11 50935114 50970799 + MGP_CASTEiJ_P0028394 Cdkl3 protein_coding protein_coding MGP_CASTEiJ_T0028395.1 MGP_CASTEiJ_G0017596.1 mouse_genomes_project 11 50935114 50966424 + MGP_CASTEiJ_P0028395 Cdkl3 protein_coding protein_coding MGP_CASTEiJ_T0028396.1 MGP_CASTEiJ_G0017596.1 mouse_genomes_project 11 50935114 50973010 + MGP_CASTEiJ_P0028396 Cdkl3 protein_coding protein_coding MGP_CASTEiJ_T0028397.1 MGP_CASTEiJ_G0017596.1 mouse_genomes_project 11 50935114 51023684 + MGP_CASTEiJ_P0028397 Cdkl3 protein_coding protein_coding MGP_CASTEiJ_T0028398.1 MGP_CASTEiJ_G0017596.1 mouse_genomes_project 11 50935114 50970799 + MGP_CASTEiJ_P0028398 Cdkl3 protein_coding protein_coding MGP_CASTEiJ_T0028399.1 MGP_CASTEiJ_G0017596.1 mouse_genomes_project 11 50935118 50961366 + MGP_CASTEiJ_P0028399 Cdkl3 protein_coding protein_coding MGP_CASTEiJ_T0028400.1 MGP_CASTEiJ_G0017596.1 mouse_genomes_project 11 50935134 50966491 + MGP_CASTEiJ_P0028400 Cdkl3 protein_coding protein_coding MGP_CASTEiJ_T0028401.1 MGP_CASTEiJ_G0017596.1 mouse_genomes_project 11 50935147 50951762 + MGP_CASTEiJ_P0028401 Cdkl3 protein_coding protein_coding MGP_CASTEiJ_T0028402.1 MGP_CASTEiJ_G0017596.1 mouse_genomes_project 11 50935158 50995302 + MGP_CASTEiJ_P0028402 Cdkl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028403.1 MGP_CASTEiJ_G0017596.1 mouse_genomes_project 11 50935174 50966345 + MGP_CASTEiJ_P0028403 Cdkl3 protein_coding protein_coding MGP_CASTEiJ_T0028404.1 MGP_CASTEiJ_G0017596.1 mouse_genomes_project 11 50935183 50970799 + MGP_CASTEiJ_P0028404 Cdkl3 protein_coding protein_coding MGP_CASTEiJ_T0028405.1 MGP_CASTEiJ_G0017596.1 mouse_genomes_project 11 50960554 51024126 + MGP_CASTEiJ_P0028405 Cdkl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028406.1 MGP_CASTEiJ_G0017596.1 mouse_genomes_project 11 50960778 50966346 + MGP_CASTEiJ_P0028406 Cdkl3 protein_coding protein_coding MGP_CASTEiJ_T0028407.1 MGP_CASTEiJ_G0017596.1 mouse_genomes_project 11 50964946 51028803 + MGP_CASTEiJ_P0028407 Cdkl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028408.1 MGP_CASTEiJ_G0017596.1 mouse_genomes_project 11 50965031 51028809 + MGP_CASTEiJ_P0028408 Cdkl3 protein_coding protein_coding MGP_CASTEiJ_T0028409.1 MGP_CASTEiJ_G0017596.1 mouse_genomes_project 11 50966148 51028801 + MGP_CASTEiJ_P0028409 Cdkl3 protein_coding protein_coding MGP_CASTEiJ_T0016481.1 MGP_CASTEiJ_G0014497.1 mouse_genomes_project 11 75701427 75706483 + 1700016P03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0032881.1 MGP_CASTEiJ_G0018659.1 mouse_genomes_project 11 117434842 117460594 - MGP_CASTEiJ_P0032881 Cdc42ep4 protein_coding protein_coding MGP_CASTEiJ_T0032882.1 MGP_CASTEiJ_G0018659.1 mouse_genomes_project 11 117434844 117461157 - MGP_CASTEiJ_P0032882 Cdc42ep4 protein_coding protein_coding MGP_CASTEiJ_T0032883.1 MGP_CASTEiJ_G0018659.1 mouse_genomes_project 11 117436962 117447293 - MGP_CASTEiJ_P0032883 Cdc42ep4 protein_coding protein_coding MGP_CASTEiJ_T0032884.1 MGP_CASTEiJ_G0018659.1 mouse_genomes_project 11 117437284 117460430 - MGP_CASTEiJ_P0032884 Cdc42ep4 protein_coding protein_coding MGP_CASTEiJ_T0003217.1 MGP_CASTEiJ_G0002979.1 mouse_genomes_project 11 111455125 111467402 + Gm11655 antisense antisense MGP_CASTEiJ_T0012223.1 MGP_CASTEiJ_G0010386.1 mouse_genomes_project 11 39888276 39889188 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012327.1 MGP_CASTEiJ_G0010490.1 mouse_genomes_project 11 80053054 80053502 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031902.1 MGP_CASTEiJ_G0018465.1 mouse_genomes_project 11 103249969 103256818 + MGP_CASTEiJ_P0031902 Cnp protein_coding protein_coding MGP_CASTEiJ_T0031903.1 MGP_CASTEiJ_G0018465.1 mouse_genomes_project 11 103250178 103251515 + Cnp protein_coding processed_transcript MGP_CASTEiJ_T0031904.1 MGP_CASTEiJ_G0018465.1 mouse_genomes_project 11 103250590 103256818 + Cnp protein_coding processed_transcript MGP_CASTEiJ_T0031905.1 MGP_CASTEiJ_G0018465.1 mouse_genomes_project 11 103250955 103266834 + Cnp protein_coding processed_transcript MGP_CASTEiJ_T0030213.1 MGP_CASTEiJ_G0018031.1 mouse_genomes_project 11 76403768 76512135 - MGP_CASTEiJ_P0030213 Rph3al protein_coding protein_coding MGP_CASTEiJ_T0030214.1 MGP_CASTEiJ_G0018031.1 mouse_genomes_project 11 76404914 76485293 - MGP_CASTEiJ_P0030214 Rph3al protein_coding protein_coding MGP_CASTEiJ_T0030215.1 MGP_CASTEiJ_G0018031.1 mouse_genomes_project 11 76474018 76500148 - MGP_CASTEiJ_P0030215 Rph3al protein_coding protein_coding MGP_CASTEiJ_T0030216.1 MGP_CASTEiJ_G0018031.1 mouse_genomes_project 11 76475037 76512094 - MGP_CASTEiJ_P0030216 Rph3al protein_coding protein_coding MGP_CASTEiJ_T0030217.1 MGP_CASTEiJ_G0018031.1 mouse_genomes_project 11 76480825 76512826 - MGP_CASTEiJ_P0030217 Rph3al protein_coding protein_coding MGP_CASTEiJ_T0010987.1 MGP_CASTEiJ_G0009175.1 mouse_genomes_project 11 120888735 120888908 - Gm27401 misc_RNA misc_RNA MGP_CASTEiJ_T0003156.1 MGP_CASTEiJ_G0002928.1 mouse_genomes_project 11 97389907 97405444 + Gm11520 antisense antisense MGP_CASTEiJ_T0027846.1 MGP_CASTEiJ_G0017446.1 mouse_genomes_project 11 30176741 30219192 - MGP_CASTEiJ_P0027846 Nprl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027851.1 MGP_CASTEiJ_G0017446.1 mouse_genomes_project 11 30182404 30207530 - Nprl3 protein_coding processed_transcript MGP_CASTEiJ_T0027852.1 MGP_CASTEiJ_G0017446.1 mouse_genomes_project 11 30182404 30219192 - MGP_CASTEiJ_P0027852 Nprl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027853.1 MGP_CASTEiJ_G0017446.1 mouse_genomes_project 11 30183101 30219210 - MGP_CASTEiJ_P0027853 Nprl3 protein_coding protein_coding MGP_CASTEiJ_T0027854.1 MGP_CASTEiJ_G0017446.1 mouse_genomes_project 11 30183192 30219161 - MGP_CASTEiJ_P0027854 Nprl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027855.1 MGP_CASTEiJ_G0017446.1 mouse_genomes_project 11 30184075 30185519 - Nprl3 protein_coding retained_intron MGP_CASTEiJ_T0027856.1 MGP_CASTEiJ_G0017446.1 mouse_genomes_project 11 30184083 30219132 - MGP_CASTEiJ_P0027856 Nprl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027857.1 MGP_CASTEiJ_G0017446.1 mouse_genomes_project 11 30184091 30219050 - MGP_CASTEiJ_P0027857 Nprl3 protein_coding protein_coding MGP_CASTEiJ_T0027858.1 MGP_CASTEiJ_G0017446.1 mouse_genomes_project 11 30187950 30191044 - Nprl3 protein_coding retained_intron MGP_CASTEiJ_T0027859.1 MGP_CASTEiJ_G0017446.1 mouse_genomes_project 11 30187996 30189139 - Nprl3 protein_coding retained_intron MGP_CASTEiJ_T0027860.1 MGP_CASTEiJ_G0017446.1 mouse_genomes_project 11 30190902 30205173 - Nprl3 protein_coding retained_intron MGP_CASTEiJ_T0027861.1 MGP_CASTEiJ_G0017446.1 mouse_genomes_project 11 30190965 30219161 - MGP_CASTEiJ_P0027861 Nprl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027862.1 MGP_CASTEiJ_G0017446.1 mouse_genomes_project 11 30192753 30201309 - Nprl3 protein_coding processed_transcript MGP_CASTEiJ_T0027863.1 MGP_CASTEiJ_G0017446.1 mouse_genomes_project 11 30198882 30201409 - Nprl3 protein_coding processed_transcript MGP_CASTEiJ_T0027864.1 MGP_CASTEiJ_G0017446.1 mouse_genomes_project 11 30201293 30219118 - MGP_CASTEiJ_P0027864 Nprl3 protein_coding protein_coding MGP_CASTEiJ_T0027865.1 MGP_CASTEiJ_G0017446.1 mouse_genomes_project 11 30214402 30219054 - Nprl3 protein_coding processed_transcript MGP_CASTEiJ_T0029289.1 MGP_CASTEiJ_G0017814.1 mouse_genomes_project 11 68842821 68882769 - MGP_CASTEiJ_P0029289 Ndel1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029290.1 MGP_CASTEiJ_G0017814.1 mouse_genomes_project 11 68847736 68882839 - MGP_CASTEiJ_P0029290 Ndel1 protein_coding protein_coding MGP_CASTEiJ_T0029291.1 MGP_CASTEiJ_G0017814.1 mouse_genomes_project 11 68848406 68868320 - Ndel1 protein_coding processed_transcript MGP_CASTEiJ_T0029292.1 MGP_CASTEiJ_G0017814.1 mouse_genomes_project 11 68857938 68903349 - MGP_CASTEiJ_P0029292 Ndel1 protein_coding protein_coding MGP_CASTEiJ_T0029293.1 MGP_CASTEiJ_G0017814.1 mouse_genomes_project 11 68857950 68882745 - MGP_CASTEiJ_P0029293 Ndel1 protein_coding protein_coding MGP_CASTEiJ_T0029294.1 MGP_CASTEiJ_G0017814.1 mouse_genomes_project 11 68864856 68889687 - Ndel1 protein_coding processed_transcript MGP_CASTEiJ_T0029295.1 MGP_CASTEiJ_G0017814.1 mouse_genomes_project 11 68868313 68894733 - Ndel1 protein_coding processed_transcript MGP_CASTEiJ_T0027248.1 MGP_CASTEiJ_G0017316.1 mouse_genomes_project 11 2201016 2377338 - MGP_CASTEiJ_P0027248 Znrf3 protein_coding protein_coding MGP_CASTEiJ_T0027249.1 MGP_CASTEiJ_G0017316.1 mouse_genomes_project 11 2203285 2314845 - MGP_CASTEiJ_P0027249 Znrf3 protein_coding protein_coding MGP_CASTEiJ_T0027250.1 MGP_CASTEiJ_G0017316.1 mouse_genomes_project 11 2213467 2377338 - MGP_CASTEiJ_P0027250 Znrf3 protein_coding protein_coding MGP_CASTEiJ_T0006159.1 MGP_CASTEiJ_G0005149.1 mouse_genomes_project 11 97780292 97782853 + Gm26830 lincRNA lincRNA MGP_CASTEiJ_T0027705.1 MGP_CASTEiJ_G0017416.1 mouse_genomes_project 11 26019390 26020369 - MGP_CASTEiJ_P0027705 protein_coding protein_coding MGP_CASTEiJ_T0030257.1 MGP_CASTEiJ_G0018041.1 mouse_genomes_project 11 77014596 77023765 + MGP_CASTEiJ_P0030257 Timm22 protein_coding protein_coding MGP_CASTEiJ_T0030258.1 MGP_CASTEiJ_G0018041.1 mouse_genomes_project 11 77014787 77025730 + MGP_CASTEiJ_P0030258 Timm22 protein_coding protein_coding MGP_CASTEiJ_T0030259.1 MGP_CASTEiJ_G0018041.1 mouse_genomes_project 11 77014835 77023518 + MGP_CASTEiJ_P0030259 Timm22 protein_coding protein_coding MGP_CASTEiJ_T0030260.1 MGP_CASTEiJ_G0018041.1 mouse_genomes_project 11 77014849 77019315 + MGP_CASTEiJ_P0030260 Timm22 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0016453.1 MGP_CASTEiJ_G0014482.1 mouse_genomes_project 11 49395599 49398735 - Gm12198 processed_transcript processed_transcript MGP_CASTEiJ_T0031166.1 MGP_CASTEiJ_G0018254.1 mouse_genomes_project 11 95714177 95741286 - Utp18 protein_coding processed_transcript MGP_CASTEiJ_T0031167.1 MGP_CASTEiJ_G0018254.1 mouse_genomes_project 11 95714877 95741583 - MGP_CASTEiJ_P0031167 Utp18 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031168.1 MGP_CASTEiJ_G0018254.1 mouse_genomes_project 11 95714877 95741285 - MGP_CASTEiJ_P0031168 Utp18 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031169.1 MGP_CASTEiJ_G0018254.1 mouse_genomes_project 11 95730358 95731120 - Utp18 protein_coding processed_transcript MGP_CASTEiJ_T0012132.1 MGP_CASTEiJ_G0010295.1 mouse_genomes_project 11 5927764 5928534 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028724.1 MGP_CASTEiJ_G0017692.1 mouse_genomes_project 11 58357160 58374070 + MGP_CASTEiJ_P0028724 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028725.1 MGP_CASTEiJ_G0017692.1 mouse_genomes_project 11 58364831 58373543 + MGP_CASTEiJ_P0028725 protein_coding protein_coding MGP_CASTEiJ_T0028726.1 MGP_CASTEiJ_G0017692.1 mouse_genomes_project 11 58364879 58374068 + MGP_CASTEiJ_P0028726 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028727.1 MGP_CASTEiJ_G0017692.1 mouse_genomes_project 11 58364984 58373875 + MGP_CASTEiJ_P0028727 protein_coding protein_coding MGP_CASTEiJ_T0028728.1 MGP_CASTEiJ_G0017692.1 mouse_genomes_project 11 58364984 58373875 + MGP_CASTEiJ_P0028728 protein_coding protein_coding MGP_CASTEiJ_T0003135.1 MGP_CASTEiJ_G0002914.1 mouse_genomes_project 11 84040967 84060119 - Slfn5os antisense antisense MGP_CASTEiJ_T0030536.1 MGP_CASTEiJ_G0018097.1 mouse_genomes_project 11 79348126 79480777 - MGP_CASTEiJ_P0030536 Nlk protein_coding protein_coding MGP_CASTEiJ_T0030537.1 MGP_CASTEiJ_G0018097.1 mouse_genomes_project 11 79399103 79479895 - Nlk protein_coding retained_intron MGP_CASTEiJ_T0100470.1 MGP_CASTEiJ_G0037383.1 mouse_genomes_project 11 100081071 100081166 - Gm27326 snoRNA snoRNA MGP_CASTEiJ_T0009494.1 MGP_CASTEiJ_G0007682.1 mouse_genomes_project 11 100038192 100038331 + Mir8102 miRNA miRNA MGP_CASTEiJ_T0031633.1 MGP_CASTEiJ_G0018361.1 mouse_genomes_project 11 100538479 100588571 + MGP_CASTEiJ_P0031633 Cdk12 protein_coding protein_coding MGP_CASTEiJ_T0031634.1 MGP_CASTEiJ_G0018361.1 mouse_genomes_project 11 100538734 100583684 + MGP_CASTEiJ_P0031634 Cdk12 protein_coding protein_coding MGP_CASTEiJ_T0031635.1 MGP_CASTEiJ_G0018361.1 mouse_genomes_project 11 100538755 100588053 + MGP_CASTEiJ_P0031635 Cdk12 protein_coding protein_coding MGP_CASTEiJ_T0031636.1 MGP_CASTEiJ_G0018361.1 mouse_genomes_project 11 100557567 100562693 + Cdk12 protein_coding processed_transcript MGP_CASTEiJ_T0031637.1 MGP_CASTEiJ_G0018361.1 mouse_genomes_project 11 100578690 100617961 + Cdk12 protein_coding processed_transcript MGP_CASTEiJ_T0031638.1 MGP_CASTEiJ_G0018361.1 mouse_genomes_project 11 100603153 100607662 + Cdk12 protein_coding processed_transcript MGP_CASTEiJ_T0006033.1 MGP_CASTEiJ_G0005053.1 mouse_genomes_project 11 22522731 22546552 - Gm12665 lincRNA lincRNA MGP_CASTEiJ_T0006034.1 MGP_CASTEiJ_G0005053.1 mouse_genomes_project 11 22522731 22546544 - Gm12665 lincRNA lincRNA MGP_CASTEiJ_T0006081.1 MGP_CASTEiJ_G0005092.1 mouse_genomes_project 11 58304632 58305826 + Gm12259 lincRNA lincRNA MGP_CASTEiJ_T0006089.1 MGP_CASTEiJ_G0005099.1 mouse_genomes_project 11 61623049 61624910 + Gm12273 lincRNA lincRNA MGP_CASTEiJ_T0012323.1 MGP_CASTEiJ_G0010486.1 mouse_genomes_project 11 78891379 78891622 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031728.1 MGP_CASTEiJ_G0018383.1 mouse_genomes_project 11 101303431 101333606 + MGP_CASTEiJ_P0031728 Casc3 protein_coding protein_coding MGP_CASTEiJ_T0031729.1 MGP_CASTEiJ_G0018383.1 mouse_genomes_project 11 101308286 101333598 + MGP_CASTEiJ_P0031729 Casc3 protein_coding protein_coding MGP_CASTEiJ_T0031730.1 MGP_CASTEiJ_G0018383.1 mouse_genomes_project 11 101308628 101309408 + Casc3 protein_coding processed_transcript MGP_CASTEiJ_T0031731.1 MGP_CASTEiJ_G0018383.1 mouse_genomes_project 11 101308639 101321295 + Casc3 protein_coding processed_transcript MGP_CASTEiJ_T0028762.1 MGP_CASTEiJ_G0017702.1 mouse_genomes_project 11 58664711 58668144 + MGP_CASTEiJ_P0028762 Mrpl55 protein_coding protein_coding MGP_CASTEiJ_T0028763.1 MGP_CASTEiJ_G0017702.1 mouse_genomes_project 11 58664714 58668105 + MGP_CASTEiJ_P0028763 Mrpl55 protein_coding protein_coding MGP_CASTEiJ_T0028764.1 MGP_CASTEiJ_G0017702.1 mouse_genomes_project 11 58664717 58668351 + MGP_CASTEiJ_P0028764 Mrpl55 protein_coding protein_coding MGP_CASTEiJ_T0028765.1 MGP_CASTEiJ_G0017702.1 mouse_genomes_project 11 58664730 58668219 + MGP_CASTEiJ_P0028765 Mrpl55 protein_coding protein_coding MGP_CASTEiJ_T0028766.1 MGP_CASTEiJ_G0017702.1 mouse_genomes_project 11 58664763 58668105 + MGP_CASTEiJ_P0028766 Mrpl55 protein_coding protein_coding MGP_CASTEiJ_T0031682.1 MGP_CASTEiJ_G0018375.1 mouse_genomes_project 11 101130257 101142058 + MGP_CASTEiJ_P0031682 Gsdma2 protein_coding protein_coding MGP_CASTEiJ_T0031683.1 MGP_CASTEiJ_G0018375.1 mouse_genomes_project 11 101130261 101134794 + Gsdma2 protein_coding processed_transcript MGP_CASTEiJ_T0031684.1 MGP_CASTEiJ_G0018375.1 mouse_genomes_project 11 101130261 101142047 + MGP_CASTEiJ_P0031684 Gsdma2 protein_coding protein_coding MGP_CASTEiJ_T0031685.1 MGP_CASTEiJ_G0018375.1 mouse_genomes_project 11 101130267 101133755 + Gsdma2 protein_coding processed_transcript MGP_CASTEiJ_T0031686.1 MGP_CASTEiJ_G0018375.1 mouse_genomes_project 11 101130273 101134367 + Gsdma2 protein_coding processed_transcript MGP_CASTEiJ_T0031687.1 MGP_CASTEiJ_G0018375.1 mouse_genomes_project 11 101135327 101136713 + Gsdma2 protein_coding processed_transcript MGP_CASTEiJ_T0031688.1 MGP_CASTEiJ_G0018375.1 mouse_genomes_project 11 101136189 101139341 + Gsdma2 protein_coding processed_transcript MGP_CASTEiJ_T0100442.1 MGP_CASTEiJ_G0037355.1 mouse_genomes_project 11 60383565 60383691 + Gm24945 snoRNA snoRNA MGP_CASTEiJ_T0032813.1 MGP_CASTEiJ_G0018643.1 mouse_genomes_project 11 113159687 113205096 - MGP_CASTEiJ_P0032813 1700012B07Rik protein_coding protein_coding MGP_CASTEiJ_T0032814.1 MGP_CASTEiJ_G0018643.1 mouse_genomes_project 11 113163481 113205072 - MGP_CASTEiJ_P0032814 1700012B07Rik protein_coding protein_coding MGP_CASTEiJ_T0032815.1 MGP_CASTEiJ_G0018643.1 mouse_genomes_project 11 113163522 113186623 - MGP_CASTEiJ_P0032815 1700012B07Rik protein_coding protein_coding MGP_CASTEiJ_T0029716.1 MGP_CASTEiJ_G0017906.1 mouse_genomes_project 11 70675222 70681114 + MGP_CASTEiJ_P0029716 Tm4sf5 protein_coding protein_coding MGP_CASTEiJ_T0029717.1 MGP_CASTEiJ_G0017906.1 mouse_genomes_project 11 70679903 70680816 + Tm4sf5 protein_coding processed_transcript MGP_CASTEiJ_T0029718.1 MGP_CASTEiJ_G0017906.1 mouse_genomes_project 11 70680139 70680903 + Tm4sf5 protein_coding retained_intron MGP_CASTEiJ_T0012306.1 MGP_CASTEiJ_G0010469.1 mouse_genomes_project 11 71302811 71303531 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029200.1 MGP_CASTEiJ_G0017792.1 mouse_genomes_project 11 66969844 66984281 - MGP_CASTEiJ_P0029200 Adprm protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029201.1 MGP_CASTEiJ_G0017792.1 mouse_genomes_project 11 66969985 66983977 - MGP_CASTEiJ_P0029201 Adprm protein_coding unknown_likely_coding MGP_CASTEiJ_T0029202.1 MGP_CASTEiJ_G0017792.1 mouse_genomes_project 11 66970208 66972463 - Adprm protein_coding processed_transcript MGP_CASTEiJ_T0029203.1 MGP_CASTEiJ_G0017792.1 mouse_genomes_project 11 66973642 66984272 - Adprm protein_coding processed_transcript MGP_CASTEiJ_T0029204.1 MGP_CASTEiJ_G0017792.1 mouse_genomes_project 11 66973683 66984278 - Adprm protein_coding processed_transcript MGP_CASTEiJ_T0029205.1 MGP_CASTEiJ_G0017792.1 mouse_genomes_project 11 66973828 66984276 - Adprm protein_coding processed_transcript MGP_CASTEiJ_T0006108.1 MGP_CASTEiJ_G0005114.1 mouse_genomes_project 11 71967858 71979380 - Gm12324 lincRNA lincRNA MGP_CASTEiJ_T0027429.1 MGP_CASTEiJ_G0017360.1 mouse_genomes_project 11 8714664 8743559 + protein_coding processed_transcript MGP_CASTEiJ_T0027430.1 MGP_CASTEiJ_G0017360.1 mouse_genomes_project 11 8716815 8769624 + MGP_CASTEiJ_P0027430 protein_coding protein_coding MGP_CASTEiJ_T0027431.1 MGP_CASTEiJ_G0017360.1 mouse_genomes_project 11 8744287 8769622 + MGP_CASTEiJ_P0027431 protein_coding protein_coding MGP_CASTEiJ_T0003256.1 MGP_CASTEiJ_G0003007.1 mouse_genomes_project 11 124994838 125007486 + Myadml2os antisense antisense MGP_CASTEiJ_T0011463.1 MGP_CASTEiJ_G0009649.1 mouse_genomes_project 11 74174467 74175528 - MGP_CASTEiJ_P0011463 Olfr388-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0102013.1 MGP_CASTEiJ_G0038738.1 mouse_genomes_project 11 102569635 102569875 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0033225.1 MGP_CASTEiJ_G0018724.1 mouse_genomes_project 11 120200990 120220179 - MGP_CASTEiJ_P0033225 Evpl protein_coding unknown_likely_coding MGP_CASTEiJ_T0033226.1 MGP_CASTEiJ_G0018724.1 mouse_genomes_project 11 120200998 120220213 - MGP_CASTEiJ_P0033226 Evpl protein_coding protein_coding MGP_CASTEiJ_T0006016.1 MGP_CASTEiJ_G0005036.1 mouse_genomes_project 11 16384767 16397689 + 4933406G16Rik lincRNA lincRNA MGP_CASTEiJ_T0016407.1 MGP_CASTEiJ_G0014460.1 mouse_genomes_project 11 118295 131329 + Gm11944 processed_transcript processed_transcript MGP_CASTEiJ_T0003048.1 MGP_CASTEiJ_G0002841.1 mouse_genomes_project 11 49660899 49662152 - Gm12660 antisense antisense MGP_CASTEiJ_T0028769.1 MGP_CASTEiJ_G0017705.1 mouse_genomes_project 11 58782814 58810892 + MGP_CASTEiJ_P0028769 Wnt9a protein_coding protein_coding MGP_CASTEiJ_T0028770.1 MGP_CASTEiJ_G0017705.1 mouse_genomes_project 11 58782816 58810892 + MGP_CASTEiJ_P0028770 Wnt9a protein_coding protein_coding MGP_CASTEiJ_T0028771.1 MGP_CASTEiJ_G0017705.1 mouse_genomes_project 11 58782823 58845856 + MGP_CASTEiJ_P0028771 Wnt9a protein_coding unknown_likely_coding MGP_CASTEiJ_T0028772.1 MGP_CASTEiJ_G0017705.1 mouse_genomes_project 11 58782830 58845856 + MGP_CASTEiJ_P0028772 Wnt9a protein_coding unknown_likely_coding MGP_CASTEiJ_T0006213.1 MGP_CASTEiJ_G0005189.1 mouse_genomes_project 11 123321790 123327830 - Gm11754 lincRNA lincRNA MGP_CASTEiJ_T0012331.1 MGP_CASTEiJ_G0010494.1 mouse_genomes_project 11 80782117 80782264 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003123.1 MGP_CASTEiJ_G0002904.1 mouse_genomes_project 11 79842497 79852577 + Gm11201 antisense antisense MGP_CASTEiJ_T0003067.1 MGP_CASTEiJ_G0002858.1 mouse_genomes_project 11 56917473 56919885 - 4933426K07Rik antisense antisense MGP_CASTEiJ_T0003235.1 MGP_CASTEiJ_G0002993.1 mouse_genomes_project 11 120802610 120809752 + BC018473 antisense antisense MGP_CASTEiJ_T0003236.1 MGP_CASTEiJ_G0002993.1 mouse_genomes_project 11 120802612 120806288 + BC018473 antisense antisense MGP_CASTEiJ_T0003237.1 MGP_CASTEiJ_G0002993.1 mouse_genomes_project 11 120802795 120806288 + BC018473 antisense antisense MGP_CASTEiJ_T0003238.1 MGP_CASTEiJ_G0002993.1 mouse_genomes_project 11 120803401 120806288 + BC018473 antisense antisense MGP_CASTEiJ_T0032871.1 MGP_CASTEiJ_G0018657.1 mouse_genomes_project 11 117385340 117397015 + MGP_CASTEiJ_P0032871 D11Wsu47e protein_coding protein_coding MGP_CASTEiJ_T0032872.1 MGP_CASTEiJ_G0018657.1 mouse_genomes_project 11 117385368 117389188 + MGP_CASTEiJ_P0032872 D11Wsu47e protein_coding protein_coding MGP_CASTEiJ_T0032873.1 MGP_CASTEiJ_G0018657.1 mouse_genomes_project 11 117385375 117397015 + MGP_CASTEiJ_P0032873 D11Wsu47e protein_coding protein_coding MGP_CASTEiJ_T0032874.1 MGP_CASTEiJ_G0018657.1 mouse_genomes_project 11 117385436 117397022 + MGP_CASTEiJ_P0032874 D11Wsu47e protein_coding unknown_likely_coding MGP_CASTEiJ_T0032875.1 MGP_CASTEiJ_G0018657.1 mouse_genomes_project 11 117386014 117389103 + MGP_CASTEiJ_P0032875 D11Wsu47e protein_coding protein_coding MGP_CASTEiJ_T0030633.1 MGP_CASTEiJ_G0018121.1 mouse_genomes_project 11 81304823 81326481 + MGP_CASTEiJ_P0030633 Zfp207 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030634.1 MGP_CASTEiJ_G0018121.1 mouse_genomes_project 11 81304823 81326481 + MGP_CASTEiJ_P0030634 Zfp207 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030635.1 MGP_CASTEiJ_G0018121.1 mouse_genomes_project 11 81304846 81317793 + MGP_CASTEiJ_P0030635 Zfp207 protein_coding protein_coding MGP_CASTEiJ_T0030636.1 MGP_CASTEiJ_G0018121.1 mouse_genomes_project 11 81304898 81315833 + MGP_CASTEiJ_P0030636 Zfp207 protein_coding protein_coding MGP_CASTEiJ_T0030637.1 MGP_CASTEiJ_G0018121.1 mouse_genomes_project 11 81307424 81313444 + MGP_CASTEiJ_P0030637 Zfp207 protein_coding protein_coding MGP_CASTEiJ_T0030638.1 MGP_CASTEiJ_G0018121.1 mouse_genomes_project 11 81310688 81326375 + MGP_CASTEiJ_P0030638 Zfp207 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032253.1 MGP_CASTEiJ_G0018534.1 mouse_genomes_project 11 105101034 105105356 + MGP_CASTEiJ_P0032253 Tmub2 protein_coding protein_coding MGP_CASTEiJ_T0032254.1 MGP_CASTEiJ_G0018534.1 mouse_genomes_project 11 105101042 105104325 + Tmub2 protein_coding processed_transcript MGP_CASTEiJ_T0032255.1 MGP_CASTEiJ_G0018534.1 mouse_genomes_project 11 105101042 105105356 + MGP_CASTEiJ_P0032255 Tmub2 protein_coding protein_coding MGP_CASTEiJ_T0032256.1 MGP_CASTEiJ_G0018534.1 mouse_genomes_project 11 105101054 105103505 + Tmub2 protein_coding processed_transcript MGP_CASTEiJ_T0032257.1 MGP_CASTEiJ_G0018534.1 mouse_genomes_project 11 105101299 105105356 + MGP_CASTEiJ_P0032257 Tmub2 protein_coding protein_coding MGP_CASTEiJ_T0029277.1 MGP_CASTEiJ_G0017812.1 mouse_genomes_project 11 68598585 68608295 + MGP_CASTEiJ_P0029277 Ccdc42 protein_coding protein_coding MGP_CASTEiJ_T0029278.1 MGP_CASTEiJ_G0017812.1 mouse_genomes_project 11 68605400 68610222 + MGP_CASTEiJ_P0029278 Ccdc42 protein_coding protein_coding MGP_CASTEiJ_T0012336.1 MGP_CASTEiJ_G0010499.1 mouse_genomes_project 11 83808490 83809596 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031247.1 MGP_CASTEiJ_G0018267.1 mouse_genomes_project 11 96396360 96402542 - Spata20 protein_coding processed_transcript MGP_CASTEiJ_T0031248.1 MGP_CASTEiJ_G0018267.1 mouse_genomes_project 11 96396360 96402789 - MGP_CASTEiJ_P0031248 Spata20 protein_coding protein_coding MGP_CASTEiJ_T0031249.1 MGP_CASTEiJ_G0018267.1 mouse_genomes_project 11 96400528 96401853 - Spata20 protein_coding processed_transcript MGP_CASTEiJ_T0031250.1 MGP_CASTEiJ_G0018267.1 mouse_genomes_project 11 96400793 96402540 - Spata20 protein_coding processed_transcript MGP_CASTEiJ_T0031251.1 MGP_CASTEiJ_G0018267.1 mouse_genomes_project 11 96402048 96403610 - Spata20 protein_coding processed_transcript MGP_CASTEiJ_T0033373.1 MGP_CASTEiJ_G0018750.1 mouse_genomes_project 11 121598555 121603251 + MGP_CASTEiJ_P0033373 Gm11733 protein_coding protein_coding MGP_CASTEiJ_T0027082.1 MGP_CASTEiJ_G0017282.1 mouse_genomes_project 11 765961 775293 - MGP_CASTEiJ_P0027082 Slc35e4 protein_coding protein_coding MGP_CASTEiJ_T0027083.1 MGP_CASTEiJ_G0017282.1 mouse_genomes_project 11 765962 775293 - MGP_CASTEiJ_P0027083 Slc35e4 protein_coding protein_coding MGP_CASTEiJ_T0009424.1 MGP_CASTEiJ_G0007612.1 mouse_genomes_project 11 44758445 44758502 + Mir7239 miRNA miRNA MGP_CASTEiJ_T0012296.1 MGP_CASTEiJ_G0010459.1 mouse_genomes_project 11 69839072 69839662 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032078.1 MGP_CASTEiJ_G0018500.1 mouse_genomes_project 11 104056864 104062926 + MGP_CASTEiJ_P0032078 Aoc2 protein_coding protein_coding MGP_CASTEiJ_T0032079.1 MGP_CASTEiJ_G0018500.1 mouse_genomes_project 11 104056888 104062718 + MGP_CASTEiJ_P0032079 Aoc2 protein_coding protein_coding MGP_CASTEiJ_T0030348.1 MGP_CASTEiJ_G0018059.1 mouse_genomes_project 11 78188387 78274974 - MGP_CASTEiJ_P0030348 Taok1 protein_coding protein_coding MGP_CASTEiJ_T0030349.1 MGP_CASTEiJ_G0018059.1 mouse_genomes_project 11 78188387 78252310 - MGP_CASTEiJ_P0030349 Taok1 protein_coding protein_coding MGP_CASTEiJ_T0030350.1 MGP_CASTEiJ_G0018059.1 mouse_genomes_project 11 78197089 78275218 - MGP_CASTEiJ_P0030350 Taok1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003062.1 MGP_CASTEiJ_G0002853.1 mouse_genomes_project 11 54314491 54317442 + Slc36a3os antisense antisense MGP_CASTEiJ_T0031844.1 MGP_CASTEiJ_G0018450.1 mouse_genomes_project 11 102839734 102842613 - protein_coding processed_transcript MGP_CASTEiJ_T0031845.1 MGP_CASTEiJ_G0018450.1 mouse_genomes_project 11 102839734 102845117 - MGP_CASTEiJ_P0031845 protein_coding protein_coding MGP_CASTEiJ_T0012355.1 MGP_CASTEiJ_G0010518.1 mouse_genomes_project 11 92574460 92576040 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016406.1 MGP_CASTEiJ_G0014459.1 mouse_genomes_project 11 114715 143395 - Gm12592 processed_transcript processed_transcript MGP_CASTEiJ_T0003047.1 MGP_CASTEiJ_G0002840.1 mouse_genomes_project 11 49521421 49526883 - Gm12200 antisense antisense MGP_CASTEiJ_T0031627.1 MGP_CASTEiJ_G0018360.1 mouse_genomes_project 11 100485571 100526626 - MGP_CASTEiJ_P0031627 Med1 protein_coding protein_coding MGP_CASTEiJ_T0031628.1 MGP_CASTEiJ_G0018360.1 mouse_genomes_project 11 100485574 100526803 - MGP_CASTEiJ_P0031628 Med1 protein_coding protein_coding MGP_CASTEiJ_T0031629.1 MGP_CASTEiJ_G0018360.1 mouse_genomes_project 11 100486439 100497712 - Med1 protein_coding processed_transcript MGP_CASTEiJ_T0031630.1 MGP_CASTEiJ_G0018360.1 mouse_genomes_project 11 100491219 100494970 - Med1 protein_coding processed_transcript MGP_CASTEiJ_T0031631.1 MGP_CASTEiJ_G0018360.1 mouse_genomes_project 11 100503328 100513694 - Med1 protein_coding processed_transcript MGP_CASTEiJ_T0031632.1 MGP_CASTEiJ_G0018360.1 mouse_genomes_project 11 100503875 100526819 - Med1 protein_coding processed_transcript MGP_CASTEiJ_T0100449.1 MGP_CASTEiJ_G0037362.1 mouse_genomes_project 11 69765607 69765751 - Gm25835 snoRNA snoRNA MGP_CASTEiJ_T0031921.1 MGP_CASTEiJ_G0018468.1 mouse_genomes_project 11 103305762 103329308 - MGP_CASTEiJ_P0031921 Zfp385c protein_coding protein_coding MGP_CASTEiJ_T0031922.1 MGP_CASTEiJ_G0018468.1 mouse_genomes_project 11 103307051 103345102 - MGP_CASTEiJ_P0031922 Zfp385c protein_coding unknown_likely_coding MGP_CASTEiJ_T0031923.1 MGP_CASTEiJ_G0018468.1 mouse_genomes_project 11 103308172 103330299 - Zfp385c protein_coding processed_transcript MGP_CASTEiJ_T0031924.1 MGP_CASTEiJ_G0018468.1 mouse_genomes_project 11 103308933 103336056 - MGP_CASTEiJ_P0031924 Zfp385c protein_coding protein_coding MGP_CASTEiJ_T0031925.1 MGP_CASTEiJ_G0018468.1 mouse_genomes_project 11 103316701 103363981 - MGP_CASTEiJ_P0031925 Zfp385c protein_coding protein_coding MGP_CASTEiJ_T0033374.1 MGP_CASTEiJ_G0018751.1 mouse_genomes_project 11 121781437 121896262 + MGP_CASTEiJ_P0033374 Tnrc6c protein_coding protein_coding MGP_CASTEiJ_T0033375.1 MGP_CASTEiJ_G0018751.1 mouse_genomes_project 11 121781721 121896253 + Tnrc6c protein_coding retained_intron MGP_CASTEiJ_T0033376.1 MGP_CASTEiJ_G0018751.1 mouse_genomes_project 11 121781961 121896264 + MGP_CASTEiJ_P0033376 Tnrc6c protein_coding protein_coding MGP_CASTEiJ_T0033377.1 MGP_CASTEiJ_G0018751.1 mouse_genomes_project 11 121852773 121895064 + MGP_CASTEiJ_P0033377 Tnrc6c protein_coding protein_coding MGP_CASTEiJ_T0033378.1 MGP_CASTEiJ_G0018751.1 mouse_genomes_project 11 121875325 121882095 + Tnrc6c protein_coding retained_intron MGP_CASTEiJ_T0033379.1 MGP_CASTEiJ_G0018751.1 mouse_genomes_project 11 121882024 121884102 + Tnrc6c protein_coding retained_intron MGP_CASTEiJ_T0028469.1 MGP_CASTEiJ_G0017615.1 mouse_genomes_project 11 52651300 52686754 + MGP_CASTEiJ_P0028469 Kif3a protein_coding protein_coding MGP_CASTEiJ_T0028470.1 MGP_CASTEiJ_G0017615.1 mouse_genomes_project 11 52651300 52686012 + MGP_CASTEiJ_P0028470 Kif3a protein_coding protein_coding MGP_CASTEiJ_T0028471.1 MGP_CASTEiJ_G0017615.1 mouse_genomes_project 11 52651318 52686009 + MGP_CASTEiJ_P0028471 Kif3a protein_coding protein_coding MGP_CASTEiJ_T0028472.1 MGP_CASTEiJ_G0017615.1 mouse_genomes_project 11 52651447 52685966 + MGP_CASTEiJ_P0028472 Kif3a protein_coding protein_coding MGP_CASTEiJ_T0028473.1 MGP_CASTEiJ_G0017615.1 mouse_genomes_project 11 52651637 52663075 + Kif3a protein_coding processed_transcript MGP_CASTEiJ_T0028474.1 MGP_CASTEiJ_G0017615.1 mouse_genomes_project 11 52651782 52663700 + MGP_CASTEiJ_P0028474 Kif3a protein_coding protein_coding MGP_CASTEiJ_T0028475.1 MGP_CASTEiJ_G0017615.1 mouse_genomes_project 11 52663059 52672162 + MGP_CASTEiJ_P0028475 Kif3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028476.1 MGP_CASTEiJ_G0017615.1 mouse_genomes_project 11 52679234 52686205 + MGP_CASTEiJ_P0028476 Kif3a protein_coding protein_coding MGP_CASTEiJ_T0031787.1 MGP_CASTEiJ_G0018402.1 mouse_genomes_project 11 101966859 101973462 - MGP_CASTEiJ_P0031787 Krt12 protein_coding protein_coding MGP_CASTEiJ_T0006214.1 MGP_CASTEiJ_G0005190.1 mouse_genomes_project 11 123339431 123355792 - Gm11755 lincRNA lincRNA MGP_CASTEiJ_T0006082.1 MGP_CASTEiJ_G0005093.1 mouse_genomes_project 11 59408362 59417873 + Gm12714 lincRNA lincRNA MGP_CASTEiJ_T0033444.1 MGP_CASTEiJ_G0018766.1 mouse_genomes_project 11 122426508 122432900 - Usp36 protein_coding retained_intron MGP_CASTEiJ_T0033445.1 MGP_CASTEiJ_G0018766.1 mouse_genomes_project 11 122426509 122459050 - MGP_CASTEiJ_P0033445 Usp36 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033446.1 MGP_CASTEiJ_G0018766.1 mouse_genomes_project 11 122427726 122430150 - Usp36 protein_coding retained_intron MGP_CASTEiJ_T0033447.1 MGP_CASTEiJ_G0018766.1 mouse_genomes_project 11 122428355 122459062 - MGP_CASTEiJ_P0033447 Usp36 protein_coding protein_coding MGP_CASTEiJ_T0033448.1 MGP_CASTEiJ_G0018766.1 mouse_genomes_project 11 122452782 122459046 - Usp36 protein_coding retained_intron MGP_CASTEiJ_T0012416.1 MGP_CASTEiJ_G0010579.1 mouse_genomes_project 11 119377041 119377200 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006220.1 MGP_CASTEiJ_G0005196.1 mouse_genomes_project 11 125474049 125474614 - Gm11791 lincRNA lincRNA MGP_CASTEiJ_T0003215.1 MGP_CASTEiJ_G0002977.1 mouse_genomes_project 11 110614695 110617537 + Gm11713 antisense antisense MGP_CASTEiJ_T0033457.1 MGP_CASTEiJ_G0018770.1 mouse_genomes_project 11 122579104 122591997 - MGP_CASTEiJ_P0033457 Cant1 protein_coding protein_coding MGP_CASTEiJ_T0033458.1 MGP_CASTEiJ_G0018770.1 mouse_genomes_project 11 122579104 122592031 - MGP_CASTEiJ_P0033458 Cant1 protein_coding protein_coding MGP_CASTEiJ_T0033459.1 MGP_CASTEiJ_G0018770.1 mouse_genomes_project 11 122579105 122591968 - MGP_CASTEiJ_P0033459 Cant1 protein_coding protein_coding MGP_CASTEiJ_T0033460.1 MGP_CASTEiJ_G0018770.1 mouse_genomes_project 11 122580456 122591997 - MGP_CASTEiJ_P0033460 Cant1 protein_coding protein_coding MGP_CASTEiJ_T0033461.1 MGP_CASTEiJ_G0018770.1 mouse_genomes_project 11 122580456 122588625 - MGP_CASTEiJ_P0033461 Cant1 protein_coding protein_coding MGP_CASTEiJ_T0033462.1 MGP_CASTEiJ_G0018770.1 mouse_genomes_project 11 122580456 122591968 - MGP_CASTEiJ_P0033462 Cant1 protein_coding protein_coding MGP_CASTEiJ_T0033463.1 MGP_CASTEiJ_G0018770.1 mouse_genomes_project 11 122580816 122591893 - MGP_CASTEiJ_P0033463 Cant1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033464.1 MGP_CASTEiJ_G0018770.1 mouse_genomes_project 11 122580816 122591893 - MGP_CASTEiJ_P0033464 Cant1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006079.1 MGP_CASTEiJ_G0005090.1 mouse_genomes_project 11 56829891 56831974 + Gm12243 lincRNA lincRNA MGP_CASTEiJ_T0012113.1 MGP_CASTEiJ_G0010276.1 mouse_genomes_project 11 543288 544184 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031606.1 MGP_CASTEiJ_G0018356.1 mouse_genomes_project 11 100317308 100338455 - MGP_CASTEiJ_P0031606 Cacnb1 protein_coding protein_coding MGP_CASTEiJ_T0031607.1 MGP_CASTEiJ_G0018356.1 mouse_genomes_project 11 100318559 100338296 - MGP_CASTEiJ_P0031607 Cacnb1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031608.1 MGP_CASTEiJ_G0018356.1 mouse_genomes_project 11 100318701 100338448 - MGP_CASTEiJ_P0031608 Cacnb1 protein_coding protein_coding MGP_CASTEiJ_T0031609.1 MGP_CASTEiJ_G0018356.1 mouse_genomes_project 11 100320577 100334225 - MGP_CASTEiJ_P0031609 Cacnb1 protein_coding protein_coding MGP_CASTEiJ_T0031610.1 MGP_CASTEiJ_G0018356.1 mouse_genomes_project 11 100320755 100338455 - MGP_CASTEiJ_P0031610 Cacnb1 protein_coding protein_coding MGP_CASTEiJ_T0031611.1 MGP_CASTEiJ_G0018356.1 mouse_genomes_project 11 100320755 100338455 - MGP_CASTEiJ_P0031611 Cacnb1 protein_coding protein_coding MGP_CASTEiJ_T0031612.1 MGP_CASTEiJ_G0018356.1 mouse_genomes_project 11 100325466 100338855 - Cacnb1 protein_coding processed_transcript MGP_CASTEiJ_T0031613.1 MGP_CASTEiJ_G0018356.1 mouse_genomes_project 11 100325501 100328401 - Cacnb1 protein_coding processed_transcript MGP_CASTEiJ_T0029276.1 MGP_CASTEiJ_G0017811.1 mouse_genomes_project 11 68566287 68568347 + MGP_CASTEiJ_P0029276 Mfsd6l protein_coding protein_coding MGP_CASTEiJ_T0031182.1 MGP_CASTEiJ_G0018256.1 mouse_genomes_project 11 95812083 95818588 - MGP_CASTEiJ_P0031182 Nme2 protein_coding protein_coding MGP_CASTEiJ_T0031183.1 MGP_CASTEiJ_G0018256.1 mouse_genomes_project 11 95812086 95818112 - MGP_CASTEiJ_P0031183 Nme2 protein_coding protein_coding MGP_CASTEiJ_T0028773.1 MGP_CASTEiJ_G0017706.1 mouse_genomes_project 11 58852442 58855471 - MGP_CASTEiJ_P0028773 Prss38 protein_coding protein_coding MGP_CASTEiJ_T0031478.1 MGP_CASTEiJ_G0018327.1 mouse_genomes_project 11 99240583 99255382 + MGP_CASTEiJ_P0031478 Sp6 protein_coding protein_coding MGP_CASTEiJ_T0031479.1 MGP_CASTEiJ_G0018327.1 mouse_genomes_project 11 99247477 99255379 + MGP_CASTEiJ_P0031479 Sp6 protein_coding protein_coding MGP_CASTEiJ_T0032156.1 MGP_CASTEiJ_G0018517.1 mouse_genomes_project 11 104533143 104550532 - MGP_CASTEiJ_P0032156 Etv4 protein_coding protein_coding MGP_CASTEiJ_T0032157.1 MGP_CASTEiJ_G0018517.1 mouse_genomes_project 11 104533148 104550593 - MGP_CASTEiJ_P0032157 Etv4 protein_coding protein_coding MGP_CASTEiJ_T0032158.1 MGP_CASTEiJ_G0018517.1 mouse_genomes_project 11 104533148 104550593 - MGP_CASTEiJ_P0032158 Etv4 protein_coding protein_coding MGP_CASTEiJ_T0032159.1 MGP_CASTEiJ_G0018517.1 mouse_genomes_project 11 104533757 104535571 - Etv4 protein_coding processed_transcript MGP_CASTEiJ_T0032160.1 MGP_CASTEiJ_G0018517.1 mouse_genomes_project 11 104537110 104550083 - Etv4 protein_coding processed_transcript MGP_CASTEiJ_T0032161.1 MGP_CASTEiJ_G0018517.1 mouse_genomes_project 11 104537249 104550480 - Etv4 protein_coding processed_transcript MGP_CASTEiJ_T0032162.1 MGP_CASTEiJ_G0018517.1 mouse_genomes_project 11 104537280 104549713 - Etv4 protein_coding processed_transcript MGP_CASTEiJ_T0032163.1 MGP_CASTEiJ_G0018517.1 mouse_genomes_project 11 104537499 104550444 - Etv4 protein_coding processed_transcript MGP_CASTEiJ_T0032164.1 MGP_CASTEiJ_G0018517.1 mouse_genomes_project 11 104537586 104549610 - Etv4 protein_coding processed_transcript MGP_CASTEiJ_T0032165.1 MGP_CASTEiJ_G0018517.1 mouse_genomes_project 11 104537586 104550482 - Etv4 protein_coding processed_transcript MGP_CASTEiJ_T0032166.1 MGP_CASTEiJ_G0018517.1 mouse_genomes_project 11 104537626 104550532 - Etv4 protein_coding processed_transcript MGP_CASTEiJ_T0032167.1 MGP_CASTEiJ_G0018517.1 mouse_genomes_project 11 104549477 104550070 - Etv4 protein_coding processed_transcript MGP_CASTEiJ_T0003035.1 MGP_CASTEiJ_G0002828.1 mouse_genomes_project 11 34160376 34164782 + Gm12126 antisense antisense MGP_CASTEiJ_T0029178.1 MGP_CASTEiJ_G0017786.1 mouse_genomes_project 11 65568811 65676554 - MGP_CASTEiJ_P0029178 Map2k4 protein_coding protein_coding MGP_CASTEiJ_T0029179.1 MGP_CASTEiJ_G0017786.1 mouse_genomes_project 11 65570900 65603225 - MGP_CASTEiJ_P0029179 Map2k4 protein_coding protein_coding MGP_CASTEiJ_T0029180.1 MGP_CASTEiJ_G0017786.1 mouse_genomes_project 11 65572290 65577588 - Map2k4 protein_coding processed_transcript MGP_CASTEiJ_T0029181.1 MGP_CASTEiJ_G0017786.1 mouse_genomes_project 11 65576861 65676542 - MGP_CASTEiJ_P0029181 Map2k4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029182.1 MGP_CASTEiJ_G0017786.1 mouse_genomes_project 11 65595798 65676543 - MGP_CASTEiJ_P0029182 Map2k4 protein_coding protein_coding MGP_CASTEiJ_T0029183.1 MGP_CASTEiJ_G0017786.1 mouse_genomes_project 11 65595799 65676542 - MGP_CASTEiJ_P0029183 Map2k4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009415.1 MGP_CASTEiJ_G0007603.1 mouse_genomes_project 11 26567686 26567772 + Mir216b miRNA miRNA MGP_CASTEiJ_T0029240.1 MGP_CASTEiJ_G0017802.1 mouse_genomes_project 11 67663079 67671138 + MGP_CASTEiJ_P0029240 Rcvrn protein_coding protein_coding MGP_CASTEiJ_T0003248.1 MGP_CASTEiJ_G0003003.1 mouse_genomes_project 11 124511485 124513452 - Gm11770 antisense antisense MGP_CASTEiJ_T0009410.1 MGP_CASTEiJ_G0007598.1 mouse_genomes_project 11 19032800 19032875 - Gm22990 miRNA miRNA MGP_CASTEiJ_T0003245.1 MGP_CASTEiJ_G0003000.1 mouse_genomes_project 11 122620666 122631767 - Gm11747 antisense antisense MGP_CASTEiJ_T0029869.1 MGP_CASTEiJ_G0017933.1 mouse_genomes_project 11 71377942 71471995 - MGP_CASTEiJ_P0029869 Nlrp1b protein_coding protein_coding MGP_CASTEiJ_T0102000.1 MGP_CASTEiJ_G0038725.1 mouse_genomes_project 11 84914154 84915008 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0006179.1 MGP_CASTEiJ_G0005163.1 mouse_genomes_project 11 110135605 110136616 - Gm11707 lincRNA lincRNA MGP_CASTEiJ_T0006044.1 MGP_CASTEiJ_G0005060.1 mouse_genomes_project 11 29710575 29745116 - D630024D03Rik lincRNA lincRNA MGP_CASTEiJ_T0006045.1 MGP_CASTEiJ_G0005060.1 mouse_genomes_project 11 29721057 29745167 - D630024D03Rik lincRNA lincRNA MGP_CASTEiJ_T0006046.1 MGP_CASTEiJ_G0005060.1 mouse_genomes_project 11 29738717 29745116 - D630024D03Rik lincRNA lincRNA MGP_CASTEiJ_T0033337.1 MGP_CASTEiJ_G0018745.1 mouse_genomes_project 11 120898915 120902093 - MGP_CASTEiJ_P0033337 Srsf2 protein_coding protein_coding MGP_CASTEiJ_T0033338.1 MGP_CASTEiJ_G0018745.1 mouse_genomes_project 11 120898918 120901227 - Srsf2 protein_coding retained_intron MGP_CASTEiJ_T0033339.1 MGP_CASTEiJ_G0018745.1 mouse_genomes_project 11 120898920 120901094 - MGP_CASTEiJ_P0033339 Srsf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033340.1 MGP_CASTEiJ_G0018745.1 mouse_genomes_project 11 120899058 120902071 - MGP_CASTEiJ_P0033340 Srsf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033341.1 MGP_CASTEiJ_G0018745.1 mouse_genomes_project 11 120899067 120902071 - MGP_CASTEiJ_P0033341 Srsf2 protein_coding protein_coding MGP_CASTEiJ_T0033342.1 MGP_CASTEiJ_G0018745.1 mouse_genomes_project 11 120899121 120900579 - Srsf2 protein_coding processed_transcript MGP_CASTEiJ_T0012400.1 MGP_CASTEiJ_G0010563.1 mouse_genomes_project 11 110378845 110379382 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033605.1 MGP_CASTEiJ_G0018794.1 mouse_genomes_project 11 124385604 124387382 + MGP_CASTEiJ_P0033605 1810043H04Rik protein_coding protein_coding MGP_CASTEiJ_T0033606.1 MGP_CASTEiJ_G0018794.1 mouse_genomes_project 11 124385620 124387040 + MGP_CASTEiJ_P0033606 1810043H04Rik protein_coding protein_coding MGP_CASTEiJ_T0033607.1 MGP_CASTEiJ_G0018794.1 mouse_genomes_project 11 124385775 124387091 + 1810043H04Rik protein_coding retained_intron MGP_CASTEiJ_T0009440.1 MGP_CASTEiJ_G0007628.1 mouse_genomes_project 11 59839822 59839940 - Gm27711 miRNA miRNA MGP_CASTEiJ_T0028507.1 MGP_CASTEiJ_G0017623.1 mouse_genomes_project 11 52980964 53083954 - MGP_CASTEiJ_P0028507 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031846.1 MGP_CASTEiJ_G0018451.1 mouse_genomes_project 11 102866065 102881508 - MGP_CASTEiJ_P0031846 Krt16 protein_coding protein_coding MGP_CASTEiJ_T0003106.1 MGP_CASTEiJ_G0002889.1 mouse_genomes_project 11 68594565 68598328 - Ccdc42os antisense antisense MGP_CASTEiJ_T0030774.1 MGP_CASTEiJ_G0018160.1 mouse_genomes_project 11 84693359 84703781 - MGP_CASTEiJ_P0030774 Heatr9 protein_coding protein_coding MGP_CASTEiJ_T0003055.1 MGP_CASTEiJ_G0002847.1 mouse_genomes_project 11 52538097 52539325 - Gm12212 antisense antisense MGP_CASTEiJ_T0012225.1 MGP_CASTEiJ_G0010388.1 mouse_genomes_project 11 41886941 41887237 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033311.1 MGP_CASTEiJ_G0018741.1 mouse_genomes_project 11 120703123 120722217 - MGP_CASTEiJ_P0033311 St6galnac2 protein_coding protein_coding MGP_CASTEiJ_T0033312.1 MGP_CASTEiJ_G0018741.1 mouse_genomes_project 11 120703710 120707470 - St6galnac2 protein_coding processed_transcript MGP_CASTEiJ_T0033313.1 MGP_CASTEiJ_G0018741.1 mouse_genomes_project 11 120705300 120709084 - St6galnac2 protein_coding processed_transcript MGP_CASTEiJ_T0033314.1 MGP_CASTEiJ_G0018741.1 mouse_genomes_project 11 120709480 120712628 - St6galnac2 protein_coding processed_transcript MGP_CASTEiJ_T0033315.1 MGP_CASTEiJ_G0018741.1 mouse_genomes_project 11 120712727 120713729 - St6galnac2 protein_coding processed_transcript MGP_CASTEiJ_T0033316.1 MGP_CASTEiJ_G0018741.1 mouse_genomes_project 11 120717577 120721958 - St6galnac2 protein_coding processed_transcript MGP_CASTEiJ_T0098456.1 MGP_CASTEiJ_G0035387.1 mouse_genomes_project 11 21209164 21209281 - Gm23114 rRNA rRNA MGP_CASTEiJ_T0010964.1 MGP_CASTEiJ_G0009152.1 mouse_genomes_project 11 489973 490120 - Gm27640 misc_RNA misc_RNA MGP_CASTEiJ_T0027675.1 MGP_CASTEiJ_G0017410.1 mouse_genomes_project 11 21646612 21674202 - MGP_CASTEiJ_P0027675 A830031A19Rik protein_coding protein_coding MGP_CASTEiJ_T0029847.1 MGP_CASTEiJ_G0017929.1 mouse_genomes_project 11 71220969 71242970 - MGP_CASTEiJ_P0029847 Dhx33 protein_coding protein_coding MGP_CASTEiJ_T0029848.1 MGP_CASTEiJ_G0017929.1 mouse_genomes_project 11 71223384 71230930 - MGP_CASTEiJ_P0029848 Dhx33 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029849.1 MGP_CASTEiJ_G0017929.1 mouse_genomes_project 11 71223625 71242953 - MGP_CASTEiJ_P0029849 Dhx33 protein_coding protein_coding MGP_CASTEiJ_T0029850.1 MGP_CASTEiJ_G0017929.1 mouse_genomes_project 11 71223625 71242873 - MGP_CASTEiJ_P0029850 Dhx33 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029851.1 MGP_CASTEiJ_G0017929.1 mouse_genomes_project 11 71228636 71232138 - Dhx33 protein_coding retained_intron MGP_CASTEiJ_T0029852.1 MGP_CASTEiJ_G0017929.1 mouse_genomes_project 11 71229045 71232943 - MGP_CASTEiJ_P0029852 Dhx33 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029853.1 MGP_CASTEiJ_G0017929.1 mouse_genomes_project 11 71230030 71230967 - Dhx33 protein_coding retained_intron MGP_CASTEiJ_T0029854.1 MGP_CASTEiJ_G0017929.1 mouse_genomes_project 11 71236281 71242970 - Dhx33 protein_coding retained_intron MGP_CASTEiJ_T0012143.1 MGP_CASTEiJ_G0010306.1 mouse_genomes_project 11 12088535 12089283 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033559.1 MGP_CASTEiJ_G0018788.1 mouse_genomes_project 11 123876139 124096103 + Rptor protein_coding retained_intron MGP_CASTEiJ_T0033560.1 MGP_CASTEiJ_G0018788.1 mouse_genomes_project 11 123876229 124052131 + Rptor protein_coding retained_intron MGP_CASTEiJ_T0033561.1 MGP_CASTEiJ_G0018788.1 mouse_genomes_project 11 123876249 124120154 + Rptor protein_coding retained_intron MGP_CASTEiJ_T0033562.1 MGP_CASTEiJ_G0018788.1 mouse_genomes_project 11 123876383 124175745 + MGP_CASTEiJ_P0033562 Rptor protein_coding protein_coding MGP_CASTEiJ_T0033563.1 MGP_CASTEiJ_G0018788.1 mouse_genomes_project 11 123876931 124175914 + MGP_CASTEiJ_P0033563 Rptor protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033564.1 MGP_CASTEiJ_G0018788.1 mouse_genomes_project 11 123930932 124140540 + Rptor protein_coding retained_intron MGP_CASTEiJ_T0033565.1 MGP_CASTEiJ_G0018788.1 mouse_genomes_project 11 124069598 124122056 + MGP_CASTEiJ_P0033565 Rptor protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033566.1 MGP_CASTEiJ_G0018788.1 mouse_genomes_project 11 124083351 124141953 + Rptor protein_coding retained_intron MGP_CASTEiJ_T0033567.1 MGP_CASTEiJ_G0018788.1 mouse_genomes_project 11 124095873 124131412 + MGP_CASTEiJ_P0033567 Rptor protein_coding protein_coding MGP_CASTEiJ_T0033568.1 MGP_CASTEiJ_G0018788.1 mouse_genomes_project 11 124131372 124172454 + MGP_CASTEiJ_P0033568 Rptor protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033569.1 MGP_CASTEiJ_G0018788.1 mouse_genomes_project 11 124131422 124132912 + Rptor protein_coding retained_intron MGP_CASTEiJ_T0033570.1 MGP_CASTEiJ_G0018788.1 mouse_genomes_project 11 124132553 124160032 + MGP_CASTEiJ_P0033570 Rptor protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006094.1 MGP_CASTEiJ_G0005104.1 mouse_genomes_project 11 64698286 64701440 - Gm12292 lincRNA lincRNA MGP_CASTEiJ_T0000809.1 MGP_CASTEiJ_G0000749.1 mouse_genomes_project 11 43757428 43757731 - TEC TEC MGP_CASTEiJ_T0009414.1 MGP_CASTEiJ_G0007602.1 mouse_genomes_project 11 23876397 23876506 + Mir6372 miRNA miRNA MGP_CASTEiJ_T0028231.1 MGP_CASTEiJ_G0017556.1 mouse_genomes_project 11 48948782 48969800 - MGP_CASTEiJ_P0028231 Sqstm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028232.1 MGP_CASTEiJ_G0017556.1 mouse_genomes_project 11 48958410 48961205 - MGP_CASTEiJ_P0028232 Sqstm1 protein_coding protein_coding MGP_CASTEiJ_T0028233.1 MGP_CASTEiJ_G0017556.1 mouse_genomes_project 11 48958660 48970377 - MGP_CASTEiJ_P0028233 Sqstm1 protein_coding protein_coding MGP_CASTEiJ_T0028234.1 MGP_CASTEiJ_G0017556.1 mouse_genomes_project 11 48958660 48970377 - MGP_CASTEiJ_P0028234 Sqstm1 protein_coding protein_coding MGP_CASTEiJ_T0028235.1 MGP_CASTEiJ_G0017556.1 mouse_genomes_project 11 48958854 48969772 - MGP_CASTEiJ_P0028235 Sqstm1 protein_coding protein_coding MGP_CASTEiJ_T0028236.1 MGP_CASTEiJ_G0017556.1 mouse_genomes_project 11 48960562 48965212 - Sqstm1 protein_coding retained_intron MGP_CASTEiJ_T0028237.1 MGP_CASTEiJ_G0017556.1 mouse_genomes_project 11 48960693 48961369 - Sqstm1 protein_coding retained_intron MGP_CASTEiJ_T0028238.1 MGP_CASTEiJ_G0017556.1 mouse_genomes_project 11 48964790 48966435 - Sqstm1 protein_coding retained_intron MGP_CASTEiJ_T0100418.1 MGP_CASTEiJ_G0037331.1 mouse_genomes_project 11 9944101 9944243 + Gm22156 snoRNA snoRNA MGP_CASTEiJ_T0029359.1 MGP_CASTEiJ_G0017827.1 mouse_genomes_project 11 69144085 69155316 + MGP_CASTEiJ_P0029359 Per1 protein_coding protein_coding MGP_CASTEiJ_T0029360.1 MGP_CASTEiJ_G0017827.1 mouse_genomes_project 11 69147806 69158822 + MGP_CASTEiJ_P0029360 Per1 protein_coding protein_coding MGP_CASTEiJ_T0029361.1 MGP_CASTEiJ_G0017827.1 mouse_genomes_project 11 69149010 69149907 + MGP_CASTEiJ_P0029361 Per1 protein_coding protein_coding MGP_CASTEiJ_T0029362.1 MGP_CASTEiJ_G0017827.1 mouse_genomes_project 11 69149016 69158810 + MGP_CASTEiJ_P0029362 Per1 protein_coding protein_coding MGP_CASTEiJ_T0029363.1 MGP_CASTEiJ_G0017827.1 mouse_genomes_project 11 69149367 69155154 + MGP_CASTEiJ_P0029363 Per1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029364.1 MGP_CASTEiJ_G0017827.1 mouse_genomes_project 11 69149380 69158822 + MGP_CASTEiJ_P0029364 Per1 protein_coding protein_coding MGP_CASTEiJ_T0033359.1 MGP_CASTEiJ_G0018748.1 mouse_genomes_project 11 121193104 121231963 + Sec14l1 protein_coding retained_intron MGP_CASTEiJ_T0033360.1 MGP_CASTEiJ_G0018748.1 mouse_genomes_project 11 121193108 121238980 + MGP_CASTEiJ_P0033360 Sec14l1 protein_coding protein_coding MGP_CASTEiJ_T0033361.1 MGP_CASTEiJ_G0018748.1 mouse_genomes_project 11 121193174 121237273 + MGP_CASTEiJ_P0033361 Sec14l1 protein_coding protein_coding MGP_CASTEiJ_T0033362.1 MGP_CASTEiJ_G0018748.1 mouse_genomes_project 11 121193174 121238983 + MGP_CASTEiJ_P0033362 Sec14l1 protein_coding protein_coding MGP_CASTEiJ_T0033363.1 MGP_CASTEiJ_G0018748.1 mouse_genomes_project 11 121193188 121206675 + Sec14l1 protein_coding processed_transcript MGP_CASTEiJ_T0033364.1 MGP_CASTEiJ_G0018748.1 mouse_genomes_project 11 121234791 121236198 + Sec14l1 protein_coding retained_intron MGP_CASTEiJ_T0033863.1 MGP_CASTEiJ_G0018842.1 mouse_genomes_project 11 125543007 125544710 + MGP_CASTEiJ_P0033863 Uts2r protein_coding protein_coding MGP_CASTEiJ_T0003228.1 MGP_CASTEiJ_G0002987.1 mouse_genomes_project 11 117923274 117924515 - 1700001J04Rik antisense antisense MGP_CASTEiJ_T0003229.1 MGP_CASTEiJ_G0002987.1 mouse_genomes_project 11 117923713 117924412 - 1700001J04Rik antisense antisense MGP_CASTEiJ_T0012175.1 MGP_CASTEiJ_G0010338.1 mouse_genomes_project 11 18979686 18980070 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030014.1 MGP_CASTEiJ_G0017969.1 mouse_genomes_project 11 73750216 73769789 + MGP_CASTEiJ_P0030014 Spata22 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030015.1 MGP_CASTEiJ_G0017969.1 mouse_genomes_project 11 73753565 73781569 + MGP_CASTEiJ_P0030015 Spata22 protein_coding protein_coding MGP_CASTEiJ_T0012151.1 MGP_CASTEiJ_G0010314.1 mouse_genomes_project 11 14629722 14630564 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027669.1 MGP_CASTEiJ_G0017409.1 mouse_genomes_project 11 21444482 21479844 - MGP_CASTEiJ_P0027669 Papolg protein_coding unknown_likely_coding MGP_CASTEiJ_T0027670.1 MGP_CASTEiJ_G0017409.1 mouse_genomes_project 11 21444482 21480069 - MGP_CASTEiJ_P0027670 Papolg protein_coding unknown_likely_coding MGP_CASTEiJ_T0027671.1 MGP_CASTEiJ_G0017409.1 mouse_genomes_project 11 21446990 21480281 - MGP_CASTEiJ_P0027671 Papolg protein_coding protein_coding MGP_CASTEiJ_T0027672.1 MGP_CASTEiJ_G0017409.1 mouse_genomes_project 11 21449591 21452819 - MGP_CASTEiJ_P0027672 Papolg protein_coding protein_coding MGP_CASTEiJ_T0027673.1 MGP_CASTEiJ_G0017409.1 mouse_genomes_project 11 21450759 21476933 - Papolg protein_coding processed_transcript MGP_CASTEiJ_T0027674.1 MGP_CASTEiJ_G0017409.1 mouse_genomes_project 11 21454396 21480264 - MGP_CASTEiJ_P0027674 Papolg protein_coding protein_coding MGP_CASTEiJ_T0003179.1 MGP_CASTEiJ_G0002946.1 mouse_genomes_project 11 101935043 101935595 + Gm11940 antisense antisense MGP_CASTEiJ_T0012419.1 MGP_CASTEiJ_G0010582.1 mouse_genomes_project 11 119659396 119659610 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031355.1 MGP_CASTEiJ_G0018294.1 mouse_genomes_project 11 97673159 97692003 - MGP_CASTEiJ_P0031355 Ngfr protein_coding protein_coding MGP_CASTEiJ_T0006134.1 MGP_CASTEiJ_G0005132.1 mouse_genomes_project 11 85807312 85819115 + Lhx1os lincRNA lincRNA MGP_CASTEiJ_T0006135.1 MGP_CASTEiJ_G0005132.1 mouse_genomes_project 11 85807321 85819115 + Lhx1os lincRNA lincRNA MGP_CASTEiJ_T0006136.1 MGP_CASTEiJ_G0005132.1 mouse_genomes_project 11 85807336 85819114 + Lhx1os lincRNA lincRNA MGP_CASTEiJ_T0012194.1 MGP_CASTEiJ_G0010357.1 mouse_genomes_project 11 27145846 27146051 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029466.1 MGP_CASTEiJ_G0017854.1 mouse_genomes_project 11 69763680 69767712 - MGP_CASTEiJ_P0029466 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029467.1 MGP_CASTEiJ_G0017854.1 mouse_genomes_project 11 69763680 69769060 - MGP_CASTEiJ_P0029467 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029468.1 MGP_CASTEiJ_G0017854.1 mouse_genomes_project 11 69763685 69769076 - protein_coding retained_intron MGP_CASTEiJ_T0029469.1 MGP_CASTEiJ_G0017854.1 mouse_genomes_project 11 69764296 69765045 - protein_coding processed_transcript MGP_CASTEiJ_T0029470.1 MGP_CASTEiJ_G0017854.1 mouse_genomes_project 11 69765237 69769182 - MGP_CASTEiJ_P0029470 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029471.1 MGP_CASTEiJ_G0017854.1 mouse_genomes_project 11 69765910 69769075 - protein_coding processed_transcript MGP_CASTEiJ_T0029472.1 MGP_CASTEiJ_G0017854.1 mouse_genomes_project 11 69765918 69767644 - protein_coding processed_transcript MGP_CASTEiJ_T0029473.1 MGP_CASTEiJ_G0017854.1 mouse_genomes_project 11 69766888 69769074 - protein_coding processed_transcript MGP_CASTEiJ_T0029474.1 MGP_CASTEiJ_G0017854.1 mouse_genomes_project 11 69766935 69768489 - protein_coding processed_transcript MGP_CASTEiJ_T0029475.1 MGP_CASTEiJ_G0017854.1 mouse_genomes_project 11 69767003 69767981 - protein_coding retained_intron MGP_CASTEiJ_T0029476.1 MGP_CASTEiJ_G0017854.1 mouse_genomes_project 11 69767224 69768209 - protein_coding retained_intron MGP_CASTEiJ_T0027320.1 MGP_CASTEiJ_G0017334.1 mouse_genomes_project 11 3238696 3247554 - MGP_CASTEiJ_P0027320 Ddx56 protein_coding protein_coding MGP_CASTEiJ_T0027321.1 MGP_CASTEiJ_G0017334.1 mouse_genomes_project 11 3245086 3246174 - Ddx56 protein_coding retained_intron MGP_CASTEiJ_T0027322.1 MGP_CASTEiJ_G0017334.1 mouse_genomes_project 11 3245418 3247554 - MGP_CASTEiJ_P0027322 Ddx56 protein_coding protein_coding MGP_CASTEiJ_T0027323.1 MGP_CASTEiJ_G0017334.1 mouse_genomes_project 11 3246827 3247528 - Ddx56 protein_coding retained_intron MGP_CASTEiJ_T0012321.1 MGP_CASTEiJ_G0010484.1 mouse_genomes_project 11 78336933 78337691 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030639.1 MGP_CASTEiJ_G0018122.1 mouse_genomes_project 11 81352764 81359188 + Psmd11 protein_coding retained_intron MGP_CASTEiJ_T0030640.1 MGP_CASTEiJ_G0018122.1 mouse_genomes_project 11 81352772 81398976 + MGP_CASTEiJ_P0030640 Psmd11 protein_coding protein_coding MGP_CASTEiJ_T0030641.1 MGP_CASTEiJ_G0018122.1 mouse_genomes_project 11 81352774 81401111 + MGP_CASTEiJ_P0030641 Psmd11 protein_coding protein_coding MGP_CASTEiJ_T0030642.1 MGP_CASTEiJ_G0018122.1 mouse_genomes_project 11 81352781 81400891 + MGP_CASTEiJ_P0030642 Psmd11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030643.1 MGP_CASTEiJ_G0018122.1 mouse_genomes_project 11 81352793 81399373 + Psmd11 protein_coding retained_intron MGP_CASTEiJ_T0030644.1 MGP_CASTEiJ_G0018122.1 mouse_genomes_project 11 81352795 81371796 + MGP_CASTEiJ_P0030644 Psmd11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030645.1 MGP_CASTEiJ_G0018122.1 mouse_genomes_project 11 81352814 81386615 + MGP_CASTEiJ_P0030645 Psmd11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030646.1 MGP_CASTEiJ_G0018122.1 mouse_genomes_project 11 81352835 81382166 + MGP_CASTEiJ_P0030646 Psmd11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030647.1 MGP_CASTEiJ_G0018122.1 mouse_genomes_project 11 81352835 81396961 + MGP_CASTEiJ_P0030647 Psmd11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030648.1 MGP_CASTEiJ_G0018122.1 mouse_genomes_project 11 81352835 81398606 + MGP_CASTEiJ_P0030648 Psmd11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030649.1 MGP_CASTEiJ_G0018122.1 mouse_genomes_project 11 81352839 81382347 + MGP_CASTEiJ_P0030649 Psmd11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030650.1 MGP_CASTEiJ_G0018122.1 mouse_genomes_project 11 81354010 81382351 + MGP_CASTEiJ_P0030650 Psmd11 protein_coding protein_coding MGP_CASTEiJ_T0030651.1 MGP_CASTEiJ_G0018122.1 mouse_genomes_project 11 81382291 81398942 + MGP_CASTEiJ_P0030651 Psmd11 protein_coding protein_coding MGP_CASTEiJ_T0030652.1 MGP_CASTEiJ_G0018122.1 mouse_genomes_project 11 81386632 81398781 + MGP_CASTEiJ_P0030652 Psmd11 protein_coding protein_coding MGP_CASTEiJ_T0030653.1 MGP_CASTEiJ_G0018122.1 mouse_genomes_project 11 81388535 81401111 + MGP_CASTEiJ_P0030653 Psmd11 protein_coding protein_coding MGP_CASTEiJ_T0030654.1 MGP_CASTEiJ_G0018122.1 mouse_genomes_project 11 81388539 81398708 + MGP_CASTEiJ_P0030654 Psmd11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032580.1 MGP_CASTEiJ_G0018594.1 mouse_genomes_project 11 109100391 109120992 + MGP_CASTEiJ_P0032580 Kcnh6 protein_coding protein_coding MGP_CASTEiJ_T0032581.1 MGP_CASTEiJ_G0018594.1 mouse_genomes_project 11 109100440 109121442 + MGP_CASTEiJ_P0032581 Kcnh6 protein_coding protein_coding MGP_CASTEiJ_T0032582.1 MGP_CASTEiJ_G0018594.1 mouse_genomes_project 11 109100470 109120949 + MGP_CASTEiJ_P0032582 Kcnh6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032583.1 MGP_CASTEiJ_G0018594.1 mouse_genomes_project 11 109106046 109109747 + Kcnh6 protein_coding processed_transcript MGP_CASTEiJ_T0100466.1 MGP_CASTEiJ_G0037379.1 mouse_genomes_project 11 84536821 84536953 - Gm23951 snoRNA snoRNA MGP_CASTEiJ_T0031855.1 MGP_CASTEiJ_G0018456.1 mouse_genomes_project 11 103000978 103011861 - MGP_CASTEiJ_P0031855 Hap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031856.1 MGP_CASTEiJ_G0018456.1 mouse_genomes_project 11 103000984 103011116 - MGP_CASTEiJ_P0031856 Hap1 protein_coding protein_coding MGP_CASTEiJ_T0031857.1 MGP_CASTEiJ_G0018456.1 mouse_genomes_project 11 103002952 103009029 - MGP_CASTEiJ_P0031857 Hap1 protein_coding protein_coding MGP_CASTEiJ_T0031858.1 MGP_CASTEiJ_G0018456.1 mouse_genomes_project 11 103003072 103006895 - MGP_CASTEiJ_P0031858 Hap1 protein_coding protein_coding MGP_CASTEiJ_T0031859.1 MGP_CASTEiJ_G0018456.1 mouse_genomes_project 11 103007244 103010371 - MGP_CASTEiJ_P0031859 Hap1 protein_coding protein_coding MGP_CASTEiJ_T0032145.1 MGP_CASTEiJ_G0018514.1 mouse_genomes_project 11 104386333 104391974 + Rdm1 protein_coding processed_transcript MGP_CASTEiJ_T0032146.1 MGP_CASTEiJ_G0018514.1 mouse_genomes_project 11 104388996 104397627 + MGP_CASTEiJ_P0032146 Rdm1 protein_coding protein_coding MGP_CASTEiJ_T0032147.1 MGP_CASTEiJ_G0018514.1 mouse_genomes_project 11 104389026 104395367 + Rdm1 protein_coding processed_transcript MGP_CASTEiJ_T0032148.1 MGP_CASTEiJ_G0018514.1 mouse_genomes_project 11 104389447 104397599 + MGP_CASTEiJ_P0032148 Rdm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032149.1 MGP_CASTEiJ_G0018514.1 mouse_genomes_project 11 104395271 104397487 + Rdm1 protein_coding retained_intron MGP_CASTEiJ_T0032083.1 MGP_CASTEiJ_G0018503.1 mouse_genomes_project 11 104145539 104165412 - MGP_CASTEiJ_P0032083 Gm27029 protein_coding protein_coding MGP_CASTEiJ_T0032084.1 MGP_CASTEiJ_G0018503.1 mouse_genomes_project 11 104145714 104165689 - MGP_CASTEiJ_P0032084 Gm27029 protein_coding protein_coding MGP_CASTEiJ_T0027098.1 MGP_CASTEiJ_G0017287.1 mouse_genomes_project 11 883767 894748 + Sec14l4 protein_coding processed_transcript MGP_CASTEiJ_T0027099.1 MGP_CASTEiJ_G0017287.1 mouse_genomes_project 11 883770 896002 + Sec14l4 protein_coding processed_transcript MGP_CASTEiJ_T0027100.1 MGP_CASTEiJ_G0017287.1 mouse_genomes_project 11 883916 895621 + Sec14l4 protein_coding processed_transcript MGP_CASTEiJ_T0027101.1 MGP_CASTEiJ_G0017287.1 mouse_genomes_project 11 884086 899146 + Sec14l4 protein_coding processed_transcript MGP_CASTEiJ_T0027102.1 MGP_CASTEiJ_G0017287.1 mouse_genomes_project 11 884086 897449 + Sec14l4 protein_coding processed_transcript MGP_CASTEiJ_T0027103.1 MGP_CASTEiJ_G0017287.1 mouse_genomes_project 11 884086 899146 + MGP_CASTEiJ_P0027103 Sec14l4 protein_coding protein_coding MGP_CASTEiJ_T0027104.1 MGP_CASTEiJ_G0017287.1 mouse_genomes_project 11 884145 897449 + Sec14l4 protein_coding processed_transcript MGP_CASTEiJ_T0027105.1 MGP_CASTEiJ_G0017287.1 mouse_genomes_project 11 894041 897449 + Sec14l4 protein_coding processed_transcript MGP_CASTEiJ_T0006138.1 MGP_CASTEiJ_G0005134.1 mouse_genomes_project 11 86070788 86084896 - Gm11431 lincRNA lincRNA MGP_CASTEiJ_T0030098.1 MGP_CASTEiJ_G0018008.1 mouse_genomes_project 11 75401475 75409913 + MGP_CASTEiJ_P0030098 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030099.1 MGP_CASTEiJ_G0018008.1 mouse_genomes_project 11 75401502 75405297 + protein_coding retained_intron MGP_CASTEiJ_T0030100.1 MGP_CASTEiJ_G0018008.1 mouse_genomes_project 11 75401518 75413469 + MGP_CASTEiJ_P0030100 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030101.1 MGP_CASTEiJ_G0018008.1 mouse_genomes_project 11 75401523 75409010 + MGP_CASTEiJ_P0030101 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030102.1 MGP_CASTEiJ_G0018008.1 mouse_genomes_project 11 75405154 75408886 + protein_coding retained_intron MGP_CASTEiJ_T0030103.1 MGP_CASTEiJ_G0018008.1 mouse_genomes_project 11 75408950 75413289 + MGP_CASTEiJ_P0030103 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030104.1 MGP_CASTEiJ_G0018008.1 mouse_genomes_project 11 75410183 75413318 + protein_coding retained_intron MGP_CASTEiJ_T0033286.1 MGP_CASTEiJ_G0018735.1 mouse_genomes_project 11 120556211 120562491 - Ube2o protein_coding processed_transcript MGP_CASTEiJ_T0033287.1 MGP_CASTEiJ_G0018735.1 mouse_genomes_project 11 120556211 120600180 - MGP_CASTEiJ_P0033287 Ube2o protein_coding protein_coding MGP_CASTEiJ_T0033288.1 MGP_CASTEiJ_G0018735.1 mouse_genomes_project 11 120564178 120567284 - Ube2o protein_coding processed_transcript MGP_CASTEiJ_T0100481.1 MGP_CASTEiJ_G0037394.1 mouse_genomes_project 11 120700334 120700410 + Snord1c snoRNA snoRNA MGP_CASTEiJ_T0012324.1 MGP_CASTEiJ_G0010487.1 mouse_genomes_project 11 79341405 79341687 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031848.1 MGP_CASTEiJ_G0018453.1 mouse_genomes_project 11 102904378 102907466 - Krt42 protein_coding retained_intron MGP_CASTEiJ_T0031849.1 MGP_CASTEiJ_G0018453.1 mouse_genomes_project 11 102904383 102911344 - MGP_CASTEiJ_P0031849 Krt42 protein_coding protein_coding MGP_CASTEiJ_T0033792.1 MGP_CASTEiJ_G0018828.1 mouse_genomes_project 11 125082188 125084081 - MGP_CASTEiJ_P0033792 Dcxr protein_coding protein_coding MGP_CASTEiJ_T0033793.1 MGP_CASTEiJ_G0018828.1 mouse_genomes_project 11 125082188 125084043 - MGP_CASTEiJ_P0033793 Dcxr protein_coding protein_coding MGP_CASTEiJ_T0033794.1 MGP_CASTEiJ_G0018828.1 mouse_genomes_project 11 125082214 125084044 - Dcxr protein_coding retained_intron MGP_CASTEiJ_T0033795.1 MGP_CASTEiJ_G0018828.1 mouse_genomes_project 11 125082244 125084029 - Dcxr protein_coding processed_transcript MGP_CASTEiJ_T0006216.1 MGP_CASTEiJ_G0005192.1 mouse_genomes_project 11 123443507 123445904 + Gm11752 lincRNA lincRNA MGP_CASTEiJ_T0028314.1 MGP_CASTEiJ_G0017572.1 mouse_genomes_project 11 49764627 49767579 - MGP_CASTEiJ_P0028314 Prop1 protein_coding protein_coding MGP_CASTEiJ_T0028315.1 MGP_CASTEiJ_G0017572.1 mouse_genomes_project 11 49765013 49766276 - Prop1 protein_coding retained_intron MGP_CASTEiJ_T0028316.1 MGP_CASTEiJ_G0017572.1 mouse_genomes_project 11 49766035 49767565 - MGP_CASTEiJ_P0028316 Prop1 protein_coding protein_coding MGP_CASTEiJ_T0031769.1 MGP_CASTEiJ_G0018392.1 mouse_genomes_project 11 101676307 101688332 - MGP_CASTEiJ_P0031769 Ccr7 protein_coding protein_coding MGP_CASTEiJ_T0032276.1 MGP_CASTEiJ_G0018537.1 mouse_genomes_project 11 105188737 105205910 - MGP_CASTEiJ_P0032276 Slc4a1 protein_coding protein_coding MGP_CASTEiJ_T0032277.1 MGP_CASTEiJ_G0018537.1 mouse_genomes_project 11 105198976 105200463 - Slc4a1 protein_coding processed_transcript MGP_CASTEiJ_T0032278.1 MGP_CASTEiJ_G0018537.1 mouse_genomes_project 11 105200056 105204361 - Slc4a1 protein_coding processed_transcript MGP_CASTEiJ_T0032279.1 MGP_CASTEiJ_G0018537.1 mouse_genomes_project 11 105200089 105205877 - Slc4a1 protein_coding processed_transcript MGP_CASTEiJ_T0032280.1 MGP_CASTEiJ_G0018537.1 mouse_genomes_project 11 105201276 105206833 - Slc4a1 protein_coding processed_transcript MGP_CASTEiJ_T0029534.1 MGP_CASTEiJ_G0017873.1 mouse_genomes_project 11 70002810 70020616 - MGP_CASTEiJ_P0029534 Acap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029535.1 MGP_CASTEiJ_G0017873.1 mouse_genomes_project 11 70002818 70011169 - MGP_CASTEiJ_P0029535 Acap1 protein_coding protein_coding MGP_CASTEiJ_T0029536.1 MGP_CASTEiJ_G0017873.1 mouse_genomes_project 11 70002818 70016392 - MGP_CASTEiJ_P0029536 Acap1 protein_coding protein_coding MGP_CASTEiJ_T0029537.1 MGP_CASTEiJ_G0017873.1 mouse_genomes_project 11 70004745 70009541 - Acap1 protein_coding processed_transcript MGP_CASTEiJ_T0029538.1 MGP_CASTEiJ_G0017873.1 mouse_genomes_project 11 70010209 70011329 - Acap1 protein_coding processed_transcript MGP_CASTEiJ_T0100473.1 MGP_CASTEiJ_G0037386.1 mouse_genomes_project 11 101514659 101514774 + Gm26394 snoRNA snoRNA MGP_CASTEiJ_T0009469.1 MGP_CASTEiJ_G0007657.1 mouse_genomes_project 11 77717070 77717179 - Mir423 miRNA miRNA MGP_CASTEiJ_T0027052.1 MGP_CASTEiJ_G0017276.1 mouse_genomes_project 11 339439 343493 + Selm protein_coding processed_transcript MGP_CASTEiJ_T0027053.1 MGP_CASTEiJ_G0017276.1 mouse_genomes_project 11 339457 343276 + Selm protein_coding processed_transcript MGP_CASTEiJ_T0027054.1 MGP_CASTEiJ_G0017276.1 mouse_genomes_project 11 339622 343496 + MGP_CASTEiJ_P0027054 Selm protein_coding protein_coding MGP_CASTEiJ_T0009490.1 MGP_CASTEiJ_G0007678.1 mouse_genomes_project 11 99298108 99298215 + Mir8103 miRNA miRNA MGP_CASTEiJ_T0028867.1 MGP_CASTEiJ_G0017725.1 mouse_genomes_project 11 59894573 59937631 + MGP_CASTEiJ_P0028867 Lrrc48 protein_coding protein_coding MGP_CASTEiJ_T0028868.1 MGP_CASTEiJ_G0017725.1 mouse_genomes_project 11 59894788 59937630 + MGP_CASTEiJ_P0028868 Lrrc48 protein_coding protein_coding MGP_CASTEiJ_T0028869.1 MGP_CASTEiJ_G0017725.1 mouse_genomes_project 11 59894788 59920895 + MGP_CASTEiJ_P0028869 Lrrc48 protein_coding protein_coding MGP_CASTEiJ_T0028870.1 MGP_CASTEiJ_G0017725.1 mouse_genomes_project 11 59894816 59918631 + Lrrc48 protein_coding processed_transcript MGP_CASTEiJ_T0028871.1 MGP_CASTEiJ_G0017725.1 mouse_genomes_project 11 59894842 59937622 + MGP_CASTEiJ_P0028871 Lrrc48 protein_coding protein_coding MGP_CASTEiJ_T0031291.1 MGP_CASTEiJ_G0018279.1 mouse_genomes_project 11 96991277 97008081 + MGP_CASTEiJ_P0031291 Col1a1 protein_coding protein_coding MGP_CASTEiJ_T0031292.1 MGP_CASTEiJ_G0018279.1 mouse_genomes_project 11 96992744 96993162 + Col1a1 protein_coding processed_transcript MGP_CASTEiJ_T0031293.1 MGP_CASTEiJ_G0018279.1 mouse_genomes_project 11 96993205 97006951 + MGP_CASTEiJ_P0031293 Col1a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031294.1 MGP_CASTEiJ_G0018279.1 mouse_genomes_project 11 96994070 96994800 + Col1a1 protein_coding retained_intron MGP_CASTEiJ_T0031295.1 MGP_CASTEiJ_G0018279.1 mouse_genomes_project 11 97000425 97001087 + Col1a1 protein_coding retained_intron MGP_CASTEiJ_T0028731.1 MGP_CASTEiJ_G0017694.1 mouse_genomes_project 11 58395634 58396218 + MGP_CASTEiJ_P0028731 Hist3h2ba protein_coding protein_coding MGP_CASTEiJ_T0003159.1 MGP_CASTEiJ_G0002931.1 mouse_genomes_project 11 97810518 97826748 - Zfp652os antisense antisense MGP_CASTEiJ_T0031402.1 MGP_CASTEiJ_G0018309.1 mouse_genomes_project 11 98431759 98436871 + MGP_CASTEiJ_P0031402 Hoxb9 protein_coding protein_coding MGP_CASTEiJ_T0031403.1 MGP_CASTEiJ_G0018309.1 mouse_genomes_project 11 98431825 98436871 + MGP_CASTEiJ_P0031403 Hoxb9 protein_coding protein_coding MGP_CASTEiJ_T0003120.1 MGP_CASTEiJ_G0002901.1 mouse_genomes_project 11 78758353 78761023 - Dhrs13os antisense antisense MGP_CASTEiJ_T0012176.1 MGP_CASTEiJ_G0010339.1 mouse_genomes_project 11 19370661 19371605 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027393.1 MGP_CASTEiJ_G0017351.1 mouse_genomes_project 11 5514694 5738149 - MGP_CASTEiJ_P0027393 Tns3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027394.1 MGP_CASTEiJ_G0017351.1 mouse_genomes_project 11 5537231 5783217 - MGP_CASTEiJ_P0027394 Tns3 protein_coding protein_coding MGP_CASTEiJ_T0027395.1 MGP_CASTEiJ_G0017351.1 mouse_genomes_project 11 5539934 5738181 - MGP_CASTEiJ_P0027395 Tns3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027396.1 MGP_CASTEiJ_G0017351.1 mouse_genomes_project 11 5557879 5577520 - Tns3 protein_coding processed_transcript MGP_CASTEiJ_T0027397.1 MGP_CASTEiJ_G0017351.1 mouse_genomes_project 11 5646188 5655116 - Tns3 protein_coding processed_transcript MGP_CASTEiJ_T0027398.1 MGP_CASTEiJ_G0017351.1 mouse_genomes_project 11 5655452 5688665 - Tns3 protein_coding processed_transcript MGP_CASTEiJ_T0003071.1 MGP_CASTEiJ_G0002862.1 mouse_genomes_project 11 58449534 58453484 + Gm10435 antisense antisense MGP_CASTEiJ_T0003072.1 MGP_CASTEiJ_G0002862.1 mouse_genomes_project 11 58449534 58453484 + Gm10435 antisense antisense MGP_CASTEiJ_T0027509.1 MGP_CASTEiJ_G0017376.1 mouse_genomes_project 11 15282241 15290458 - MGP_CASTEiJ_P0027509 Etaa1 protein_coding protein_coding MGP_CASTEiJ_T0101992.1 MGP_CASTEiJ_G0038717.1 mouse_genomes_project 11 74355195 74355236 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0009450.1 MGP_CASTEiJ_G0007638.1 mouse_genomes_project 11 69759816 69759899 + Mir1934 miRNA miRNA MGP_CASTEiJ_T0003063.1 MGP_CASTEiJ_G0002854.1 mouse_genomes_project 11 54374781 54380890 - Slc36a1os antisense antisense MGP_CASTEiJ_T0032097.1 MGP_CASTEiJ_G0018507.1 mouse_genomes_project 11 104181856 104187118 + MGP_CASTEiJ_P0032097 protein_coding protein_coding MGP_CASTEiJ_T0032098.1 MGP_CASTEiJ_G0018507.1 mouse_genomes_project 11 104181996 104185523 + protein_coding processed_transcript MGP_CASTEiJ_T0032099.1 MGP_CASTEiJ_G0018507.1 mouse_genomes_project 11 104182004 104187118 + MGP_CASTEiJ_P0032099 protein_coding protein_coding MGP_CASTEiJ_T0032100.1 MGP_CASTEiJ_G0018507.1 mouse_genomes_project 11 104185217 104187118 + MGP_CASTEiJ_P0032100 protein_coding protein_coding MGP_CASTEiJ_T0032101.1 MGP_CASTEiJ_G0018507.1 mouse_genomes_project 11 104186461 104187118 + protein_coding processed_transcript MGP_CASTEiJ_T0029959.1 MGP_CASTEiJ_G0017954.1 mouse_genomes_project 11 73186875 73246438 + Zzef1 protein_coding retained_intron MGP_CASTEiJ_T0029960.1 MGP_CASTEiJ_G0017954.1 mouse_genomes_project 11 73186875 73324894 + MGP_CASTEiJ_P0029960 Zzef1 protein_coding protein_coding MGP_CASTEiJ_T0029961.1 MGP_CASTEiJ_G0017954.1 mouse_genomes_project 11 73186903 73324892 + MGP_CASTEiJ_P0029961 Zzef1 protein_coding protein_coding MGP_CASTEiJ_T0029962.1 MGP_CASTEiJ_G0017954.1 mouse_genomes_project 11 73186946 73322491 + MGP_CASTEiJ_P0029962 Zzef1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029963.1 MGP_CASTEiJ_G0017954.1 mouse_genomes_project 11 73236804 73245803 + Zzef1 protein_coding processed_transcript MGP_CASTEiJ_T0029964.1 MGP_CASTEiJ_G0017954.1 mouse_genomes_project 11 73308639 73323584 + Zzef1 protein_coding retained_intron MGP_CASTEiJ_T0029965.1 MGP_CASTEiJ_G0017954.1 mouse_genomes_project 11 73311286 73315232 + Zzef1 protein_coding retained_intron MGP_CASTEiJ_T0029966.1 MGP_CASTEiJ_G0017954.1 mouse_genomes_project 11 73317176 73324894 + Zzef1 protein_coding retained_intron MGP_CASTEiJ_T0003146.1 MGP_CASTEiJ_G0002921.1 mouse_genomes_project 11 89540986 89583656 - Gm11508 antisense antisense MGP_CASTEiJ_T0012257.1 MGP_CASTEiJ_G0010420.1 mouse_genomes_project 11 53898327 53898800 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028629.1 MGP_CASTEiJ_G0017652.1 mouse_genomes_project 11 56741396 56777286 - MGP_CASTEiJ_P0028629 Fam114a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028630.1 MGP_CASTEiJ_G0017652.1 mouse_genomes_project 11 56741401 56777297 - MGP_CASTEiJ_P0028630 Fam114a2 protein_coding protein_coding MGP_CASTEiJ_T0028631.1 MGP_CASTEiJ_G0017652.1 mouse_genomes_project 11 56764110 56766101 - Fam114a2 protein_coding processed_transcript MGP_CASTEiJ_T0028632.1 MGP_CASTEiJ_G0017652.1 mouse_genomes_project 11 56766047 56777296 - Fam114a2 protein_coding processed_transcript MGP_CASTEiJ_T0027837.1 MGP_CASTEiJ_G0017445.1 mouse_genomes_project 11 30160640 30173415 - MGP_CASTEiJ_P0027837 Rhbdf1 protein_coding protein_coding MGP_CASTEiJ_T0027838.1 MGP_CASTEiJ_G0017445.1 mouse_genomes_project 11 30160641 30168430 - Rhbdf1 protein_coding retained_intron MGP_CASTEiJ_T0027839.1 MGP_CASTEiJ_G0017445.1 mouse_genomes_project 11 30160642 30173395 - MGP_CASTEiJ_P0027839 Rhbdf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027840.1 MGP_CASTEiJ_G0017445.1 mouse_genomes_project 11 30160859 30162193 - MGP_CASTEiJ_P0027840 Rhbdf1 protein_coding protein_coding MGP_CASTEiJ_T0027841.1 MGP_CASTEiJ_G0017445.1 mouse_genomes_project 11 30161005 30161953 - Rhbdf1 protein_coding retained_intron MGP_CASTEiJ_T0027842.1 MGP_CASTEiJ_G0017445.1 mouse_genomes_project 11 30161451 30162338 - Rhbdf1 protein_coding retained_intron MGP_CASTEiJ_T0027843.1 MGP_CASTEiJ_G0017445.1 mouse_genomes_project 11 30165347 30173395 - MGP_CASTEiJ_P0027843 Rhbdf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027844.1 MGP_CASTEiJ_G0017445.1 mouse_genomes_project 11 30166127 30173359 - MGP_CASTEiJ_P0027844 Rhbdf1 protein_coding protein_coding MGP_CASTEiJ_T0027845.1 MGP_CASTEiJ_G0017445.1 mouse_genomes_project 11 30167068 30173374 - MGP_CASTEiJ_P0027845 Rhbdf1 protein_coding protein_coding MGP_CASTEiJ_T0033700.1 MGP_CASTEiJ_G0018812.1 mouse_genomes_project 11 124883797 124884950 - MGP_CASTEiJ_P0033700 Ppp1r27 protein_coding protein_coding MGP_CASTEiJ_T0099218.1 MGP_CASTEiJ_G0036131.1 mouse_genomes_project 11 16054388 16054490 + Gm23093 snRNA snRNA MGP_CASTEiJ_T0003080.1 MGP_CASTEiJ_G0002868.1 mouse_genomes_project 11 60516091 60527638 - Map2k3os antisense antisense MGP_CASTEiJ_T0010963.1 MGP_CASTEiJ_G0009151.1 mouse_genomes_project 11 489736 489824 - Gm27937 misc_RNA misc_RNA MGP_CASTEiJ_T0027271.1 MGP_CASTEiJ_G0017322.1 mouse_genomes_project 11 2739439 2753542 + MGP_CASTEiJ_P0027271 Dbnl protein_coding protein_coding MGP_CASTEiJ_T0027272.1 MGP_CASTEiJ_G0017322.1 mouse_genomes_project 11 2739473 2753201 + MGP_CASTEiJ_P0027272 Dbnl protein_coding protein_coding MGP_CASTEiJ_T0027273.1 MGP_CASTEiJ_G0017322.1 mouse_genomes_project 11 2739481 2753875 + MGP_CASTEiJ_P0027273 Dbnl protein_coding protein_coding MGP_CASTEiJ_T0012224.1 MGP_CASTEiJ_G0010387.1 mouse_genomes_project 11 40088048 40088380 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029569.1 MGP_CASTEiJ_G0017878.1 mouse_genomes_project 11 70060160 70065777 + MGP_CASTEiJ_P0029569 Ybx2 protein_coding protein_coding MGP_CASTEiJ_T0029570.1 MGP_CASTEiJ_G0017878.1 mouse_genomes_project 11 70060512 70065770 + MGP_CASTEiJ_P0029570 Ybx2 protein_coding protein_coding MGP_CASTEiJ_T0029571.1 MGP_CASTEiJ_G0017878.1 mouse_genomes_project 11 70064019 70064835 + Ybx2 protein_coding retained_intron MGP_CASTEiJ_T0029572.1 MGP_CASTEiJ_G0017878.1 mouse_genomes_project 11 70064716 70065768 + Ybx2 protein_coding retained_intron MGP_CASTEiJ_T0033150.1 MGP_CASTEiJ_G0018712.1 mouse_genomes_project 11 119927861 119963839 + MGP_CASTEiJ_P0033150 Itgb4 protein_coding protein_coding MGP_CASTEiJ_T0033151.1 MGP_CASTEiJ_G0018712.1 mouse_genomes_project 11 119927877 119963838 + MGP_CASTEiJ_P0033151 Itgb4 protein_coding protein_coding MGP_CASTEiJ_T0033152.1 MGP_CASTEiJ_G0018712.1 mouse_genomes_project 11 119927877 119963838 + MGP_CASTEiJ_P0033152 Itgb4 protein_coding protein_coding MGP_CASTEiJ_T0033153.1 MGP_CASTEiJ_G0018712.1 mouse_genomes_project 11 119927995 119949925 + Itgb4 protein_coding processed_transcript MGP_CASTEiJ_T0033154.1 MGP_CASTEiJ_G0018712.1 mouse_genomes_project 11 119928130 119963839 + MGP_CASTEiJ_P0033154 Itgb4 protein_coding protein_coding MGP_CASTEiJ_T0033155.1 MGP_CASTEiJ_G0018712.1 mouse_genomes_project 11 119930950 119963839 + MGP_CASTEiJ_P0033155 Itgb4 protein_coding protein_coding MGP_CASTEiJ_T0033156.1 MGP_CASTEiJ_G0018712.1 mouse_genomes_project 11 119930950 119963839 + MGP_CASTEiJ_P0033156 Itgb4 protein_coding protein_coding MGP_CASTEiJ_T0033157.1 MGP_CASTEiJ_G0018712.1 mouse_genomes_project 11 119943038 119944164 + Itgb4 protein_coding processed_transcript MGP_CASTEiJ_T0033158.1 MGP_CASTEiJ_G0018712.1 mouse_genomes_project 11 119944065 119945091 + Itgb4 protein_coding processed_transcript MGP_CASTEiJ_T0033159.1 MGP_CASTEiJ_G0018712.1 mouse_genomes_project 11 119948101 119949495 + Itgb4 protein_coding processed_transcript MGP_CASTEiJ_T0032829.1 MGP_CASTEiJ_G0018647.1 mouse_genomes_project 11 113579443 113655884 - MGP_CASTEiJ_P0032829 Abca6 protein_coding protein_coding MGP_CASTEiJ_T0032830.1 MGP_CASTEiJ_G0018647.1 mouse_genomes_project 11 113640664 113655884 - Abca6 protein_coding processed_transcript MGP_CASTEiJ_T0012124.1 MGP_CASTEiJ_G0010287.1 mouse_genomes_project 11 3455780 3456169 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028591.1 MGP_CASTEiJ_G0017640.1 mouse_genomes_project 11 54216826 54249239 - MGP_CASTEiJ_P0028591 Ccdc69 protein_coding protein_coding MGP_CASTEiJ_T0028592.1 MGP_CASTEiJ_G0017640.1 mouse_genomes_project 11 54217622 54249229 - MGP_CASTEiJ_P0028592 Ccdc69 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028593.1 MGP_CASTEiJ_G0017640.1 mouse_genomes_project 11 54217823 54249263 - MGP_CASTEiJ_P0028593 Ccdc69 protein_coding protein_coding MGP_CASTEiJ_T0029366.1 MGP_CASTEiJ_G0017829.1 mouse_genomes_project 11 69169267 69172887 + MGP_CASTEiJ_P0029366 Hes7 protein_coding protein_coding MGP_CASTEiJ_T0028069.1 MGP_CASTEiJ_G0017506.1 mouse_genomes_project 11 44626389 44735671 + MGP_CASTEiJ_P0028069 Adam19 protein_coding protein_coding MGP_CASTEiJ_T0028070.1 MGP_CASTEiJ_G0017506.1 mouse_genomes_project 11 44626455 44637421 + Adam19 protein_coding processed_transcript MGP_CASTEiJ_T0028071.1 MGP_CASTEiJ_G0017506.1 mouse_genomes_project 11 44712506 44732173 + Adam19 protein_coding processed_transcript MGP_CASTEiJ_T0028072.1 MGP_CASTEiJ_G0017506.1 mouse_genomes_project 11 44719662 44725954 + Adam19 protein_coding retained_intron MGP_CASTEiJ_T0032090.1 MGP_CASTEiJ_G0018505.1 mouse_genomes_project 11 104159690 104166232 - MGP_CASTEiJ_P0032090 protein_coding protein_coding MGP_CASTEiJ_T0032091.1 MGP_CASTEiJ_G0018505.1 mouse_genomes_project 11 104159690 104165562 - MGP_CASTEiJ_P0032091 protein_coding protein_coding MGP_CASTEiJ_T0032092.1 MGP_CASTEiJ_G0018505.1 mouse_genomes_project 11 104161745 104165562 - MGP_CASTEiJ_P0032092 protein_coding protein_coding MGP_CASTEiJ_T0032093.1 MGP_CASTEiJ_G0018505.1 mouse_genomes_project 11 104162332 104164752 - MGP_CASTEiJ_P0032093 protein_coding protein_coding MGP_CASTEiJ_T0032094.1 MGP_CASTEiJ_G0018505.1 mouse_genomes_project 11 104162732 104165128 - protein_coding retained_intron MGP_CASTEiJ_T0012369.1 MGP_CASTEiJ_G0010532.1 mouse_genomes_project 11 99267614 99268091 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030671.1 MGP_CASTEiJ_G0018131.1 mouse_genomes_project 11 83083150 83084964 + MGP_CASTEiJ_P0030671 Ccl7 protein_coding protein_coding MGP_CASTEiJ_T0012361.1 MGP_CASTEiJ_G0010524.1 mouse_genomes_project 11 96480049 96529897 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028412.1 MGP_CASTEiJ_G0017598.1 mouse_genomes_project 11 51198767 51213500 + MGP_CASTEiJ_P0028412 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028413.1 MGP_CASTEiJ_G0017598.1 mouse_genomes_project 11 51198809 51206769 + protein_coding retained_intron MGP_CASTEiJ_T0028414.1 MGP_CASTEiJ_G0017598.1 mouse_genomes_project 11 51198809 51213503 + MGP_CASTEiJ_P0028414 protein_coding protein_coding MGP_CASTEiJ_T0028415.1 MGP_CASTEiJ_G0017598.1 mouse_genomes_project 11 51205189 51214427 + MGP_CASTEiJ_P0028415 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028416.1 MGP_CASTEiJ_G0017598.1 mouse_genomes_project 11 51205216 51214409 + MGP_CASTEiJ_P0028416 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027258.1 MGP_CASTEiJ_G0017319.1 mouse_genomes_project 11 2507766 2629480 + MGP_CASTEiJ_P0027258 protein_coding protein_coding MGP_CASTEiJ_T0027259.1 MGP_CASTEiJ_G0017319.1 mouse_genomes_project 11 2507779 2522352 + MGP_CASTEiJ_P0027259 protein_coding protein_coding MGP_CASTEiJ_T0027260.1 MGP_CASTEiJ_G0017319.1 mouse_genomes_project 11 2507899 2598243 + MGP_CASTEiJ_P0027260 protein_coding protein_coding MGP_CASTEiJ_T0027261.1 MGP_CASTEiJ_G0017319.1 mouse_genomes_project 11 2512166 2522202 + protein_coding processed_transcript MGP_CASTEiJ_T0027262.1 MGP_CASTEiJ_G0017319.1 mouse_genomes_project 11 2569393 2587253 + MGP_CASTEiJ_P0027262 protein_coding protein_coding MGP_CASTEiJ_T0028317.1 MGP_CASTEiJ_G0017573.1 mouse_genomes_project 11 49786245 49789155 + MGP_CASTEiJ_P0028317 Olfr1378 protein_coding protein_coding MGP_CASTEiJ_T0027799.1 MGP_CASTEiJ_G0017434.1 mouse_genomes_project 11 28828282 28836333 + MGP_CASTEiJ_P0027799 Gpr75 protein_coding protein_coding MGP_CASTEiJ_T0027412.1 MGP_CASTEiJ_G0017356.1 mouse_genomes_project 11 6252851 6273420 + MGP_CASTEiJ_P0027412 Upp1 protein_coding protein_coding MGP_CASTEiJ_T0027413.1 MGP_CASTEiJ_G0017356.1 mouse_genomes_project 11 6253154 6272011 + MGP_CASTEiJ_P0027413 Upp1 protein_coding protein_coding MGP_CASTEiJ_T0027414.1 MGP_CASTEiJ_G0017356.1 mouse_genomes_project 11 6253233 6254281 + Upp1 protein_coding retained_intron MGP_CASTEiJ_T0027415.1 MGP_CASTEiJ_G0017356.1 mouse_genomes_project 11 6253393 6271940 + MGP_CASTEiJ_P0027415 Upp1 protein_coding protein_coding MGP_CASTEiJ_T0027416.1 MGP_CASTEiJ_G0017356.1 mouse_genomes_project 11 6253524 6274864 + MGP_CASTEiJ_P0027416 Upp1 protein_coding protein_coding MGP_CASTEiJ_T0027417.1 MGP_CASTEiJ_G0017356.1 mouse_genomes_project 11 6262851 6273440 + MGP_CASTEiJ_P0027417 Upp1 protein_coding protein_coding MGP_CASTEiJ_T0027418.1 MGP_CASTEiJ_G0017356.1 mouse_genomes_project 11 6271703 6274773 + Upp1 protein_coding retained_intron MGP_CASTEiJ_T0006153.1 MGP_CASTEiJ_G0005145.1 mouse_genomes_project 11 91827272 91836042 - Gm11494 lincRNA lincRNA MGP_CASTEiJ_T0012276.1 MGP_CASTEiJ_G0010439.1 mouse_genomes_project 11 60395611 60399356 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100464.1 MGP_CASTEiJ_G0037377.1 mouse_genomes_project 11 80766002 80766134 - Gm24454 snoRNA snoRNA MGP_CASTEiJ_T0028716.1 MGP_CASTEiJ_G0017689.1 mouse_genomes_project 11 58282070 58298138 + MGP_CASTEiJ_P0028716 Gm12258 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028717.1 MGP_CASTEiJ_G0017689.1 mouse_genomes_project 11 58282076 58298138 + MGP_CASTEiJ_P0028717 Gm12258 protein_coding protein_coding MGP_CASTEiJ_T0028718.1 MGP_CASTEiJ_G0017689.1 mouse_genomes_project 11 58282105 58286117 + Gm12258 protein_coding processed_transcript MGP_CASTEiJ_T0033746.1 MGP_CASTEiJ_G0018821.1 mouse_genomes_project 11 124980913 124990853 - MGP_CASTEiJ_P0033746 Pycr1 protein_coding protein_coding MGP_CASTEiJ_T0033747.1 MGP_CASTEiJ_G0018821.1 mouse_genomes_project 11 124986616 124990931 - MGP_CASTEiJ_P0033747 Pycr1 protein_coding protein_coding MGP_CASTEiJ_T0033748.1 MGP_CASTEiJ_G0018821.1 mouse_genomes_project 11 124988408 124990826 - MGP_CASTEiJ_P0033748 Pycr1 protein_coding protein_coding MGP_CASTEiJ_T0033749.1 MGP_CASTEiJ_G0018821.1 mouse_genomes_project 11 124988662 124990887 - MGP_CASTEiJ_P0033749 Pycr1 protein_coding protein_coding MGP_CASTEiJ_T0033750.1 MGP_CASTEiJ_G0018821.1 mouse_genomes_project 11 124988898 124990952 - MGP_CASTEiJ_P0033750 Pycr1 protein_coding protein_coding MGP_CASTEiJ_T0033751.1 MGP_CASTEiJ_G0018821.1 mouse_genomes_project 11 124989927 124990887 - Pycr1 protein_coding retained_intron MGP_CASTEiJ_T0006180.1 MGP_CASTEiJ_G0005164.1 mouse_genomes_project 11 110732492 110755102 - C330019F10Rik lincRNA lincRNA MGP_CASTEiJ_T0006029.1 MGP_CASTEiJ_G0005049.1 mouse_genomes_project 11 21813902 21830065 + lincRNA lincRNA MGP_CASTEiJ_T0003093.1 MGP_CASTEiJ_G0002880.1 mouse_genomes_project 11 62737408 62751930 - Cdrt4os1 antisense antisense MGP_CASTEiJ_T0003094.1 MGP_CASTEiJ_G0002880.1 mouse_genomes_project 11 62746064 62751936 - Cdrt4os1 antisense antisense MGP_CASTEiJ_T0012240.1 MGP_CASTEiJ_G0010403.1 mouse_genomes_project 11 48510473 48510853 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032473.1 MGP_CASTEiJ_G0018573.1 mouse_genomes_project 11 106681603 106704166 - MGP_CASTEiJ_P0032473 Wnt9b protein_coding protein_coding MGP_CASTEiJ_T0009404.1 MGP_CASTEiJ_G0007592.1 mouse_genomes_project 11 1956995 1957099 + miRNA miRNA MGP_CASTEiJ_T0000804.1 MGP_CASTEiJ_G0000744.1 mouse_genomes_project 11 16191147 16192708 - TEC TEC MGP_CASTEiJ_T0030156.1 MGP_CASTEiJ_G0018020.1 mouse_genomes_project 11 76006780 76015783 + Tlcd2 protein_coding processed_transcript MGP_CASTEiJ_T0030157.1 MGP_CASTEiJ_G0018020.1 mouse_genomes_project 11 76014318 76016603 + MGP_CASTEiJ_P0030157 Tlcd2 protein_coding protein_coding MGP_CASTEiJ_T0030158.1 MGP_CASTEiJ_G0018020.1 mouse_genomes_project 11 76014825 76016193 + Tlcd2 protein_coding retained_intron MGP_CASTEiJ_T0030220.1 MGP_CASTEiJ_G0018034.1 mouse_genomes_project 11 76637441 76780096 - MGP_CASTEiJ_P0030220 Vps53 protein_coding protein_coding MGP_CASTEiJ_T0030221.1 MGP_CASTEiJ_G0018034.1 mouse_genomes_project 11 76637511 76780073 - MGP_CASTEiJ_P0030221 Vps53 protein_coding protein_coding MGP_CASTEiJ_T0030222.1 MGP_CASTEiJ_G0018034.1 mouse_genomes_project 11 76637512 76780066 - MGP_CASTEiJ_P0030222 Vps53 protein_coding protein_coding MGP_CASTEiJ_T0030223.1 MGP_CASTEiJ_G0018034.1 mouse_genomes_project 11 76653056 76684753 - Vps53 protein_coding retained_intron MGP_CASTEiJ_T0030224.1 MGP_CASTEiJ_G0018034.1 mouse_genomes_project 11 76653995 76779948 - MGP_CASTEiJ_P0030224 Vps53 protein_coding protein_coding MGP_CASTEiJ_T0030225.1 MGP_CASTEiJ_G0018034.1 mouse_genomes_project 11 76654000 76779948 - MGP_CASTEiJ_P0030225 Vps53 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030226.1 MGP_CASTEiJ_G0018034.1 mouse_genomes_project 11 76654000 76779965 - MGP_CASTEiJ_P0030226 Vps53 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030227.1 MGP_CASTEiJ_G0018034.1 mouse_genomes_project 11 76710405 76779981 - MGP_CASTEiJ_P0030227 Vps53 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030228.1 MGP_CASTEiJ_G0018034.1 mouse_genomes_project 11 76711020 76765558 - MGP_CASTEiJ_P0030228 Vps53 protein_coding protein_coding MGP_CASTEiJ_T0030230.1 MGP_CASTEiJ_G0018034.1 mouse_genomes_project 11 76714762 76780036 - Vps53 protein_coding retained_intron MGP_CASTEiJ_T0030231.1 MGP_CASTEiJ_G0018034.1 mouse_genomes_project 11 76714878 76775157 - Vps53 protein_coding processed_transcript MGP_CASTEiJ_T0030232.1 MGP_CASTEiJ_G0018034.1 mouse_genomes_project 11 76714883 76736638 - Vps53 protein_coding processed_transcript MGP_CASTEiJ_T0030233.1 MGP_CASTEiJ_G0018034.1 mouse_genomes_project 11 76730808 76754381 - Vps53 protein_coding processed_transcript MGP_CASTEiJ_T0030234.1 MGP_CASTEiJ_G0018034.1 mouse_genomes_project 11 76732579 76780083 - MGP_CASTEiJ_P0030234 Vps53 protein_coding protein_coding MGP_CASTEiJ_T0030235.1 MGP_CASTEiJ_G0018034.1 mouse_genomes_project 11 76769907 76780061 - Vps53 protein_coding processed_transcript MGP_CASTEiJ_T0030236.1 MGP_CASTEiJ_G0018034.1 mouse_genomes_project 11 76776322 76780087 - MGP_CASTEiJ_P0030236 Vps53 protein_coding protein_coding MGP_CASTEiJ_T0029597.1 MGP_CASTEiJ_G0017883.1 mouse_genomes_project 11 70119176 70122730 + MGP_CASTEiJ_P0029597 Gabarap protein_coding protein_coding MGP_CASTEiJ_T0029598.1 MGP_CASTEiJ_G0017883.1 mouse_genomes_project 11 70119672 70122719 + MGP_CASTEiJ_P0029598 Gabarap protein_coding protein_coding MGP_CASTEiJ_T0029599.1 MGP_CASTEiJ_G0017883.1 mouse_genomes_project 11 70119718 70122714 + Gabarap protein_coding retained_intron MGP_CASTEiJ_T0029600.1 MGP_CASTEiJ_G0017883.1 mouse_genomes_project 11 70119841 70120621 + Gabarap protein_coding processed_transcript MGP_CASTEiJ_T0030714.1 MGP_CASTEiJ_G0018142.1 mouse_genomes_project 11 83991056 84000768 + MGP_CASTEiJ_P0030714 Fndc8 protein_coding protein_coding MGP_CASTEiJ_T0030715.1 MGP_CASTEiJ_G0018142.1 mouse_genomes_project 11 83994853 83999978 + MGP_CASTEiJ_P0030715 Fndc8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029417.1 MGP_CASTEiJ_G0017841.1 mouse_genomes_project 11 69462479 69464194 - MGP_CASTEiJ_P0029417 Tmem88 protein_coding protein_coding MGP_CASTEiJ_T0030535.1 MGP_CASTEiJ_G0018096.1 mouse_genomes_project 11 79321086 79330888 - MGP_CASTEiJ_P0030535 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0032169.1 MGP_CASTEiJ_G0018519.1 mouse_genomes_project 11 104755534 104760068 - MGP_CASTEiJ_P0032169 Sost protein_coding protein_coding MGP_CASTEiJ_T0009508.1 MGP_CASTEiJ_G0007696.1 mouse_genomes_project 11 107251698 107251769 - miRNA miRNA MGP_CASTEiJ_T0029648.1 MGP_CASTEiJ_G0017892.1 mouse_genomes_project 11 70358828 70362480 + MGP_CASTEiJ_P0029648 Slc16a11 protein_coding protein_coding MGP_CASTEiJ_T0029649.1 MGP_CASTEiJ_G0017892.1 mouse_genomes_project 11 70359940 70362488 + MGP_CASTEiJ_P0029649 Slc16a11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029650.1 MGP_CASTEiJ_G0017892.1 mouse_genomes_project 11 70359978 70362479 + MGP_CASTEiJ_P0029650 Slc16a11 protein_coding protein_coding MGP_CASTEiJ_T0029651.1 MGP_CASTEiJ_G0017892.1 mouse_genomes_project 11 70360067 70360923 + Slc16a11 protein_coding retained_intron MGP_CASTEiJ_T0029652.1 MGP_CASTEiJ_G0017892.1 mouse_genomes_project 11 70360148 70362480 + MGP_CASTEiJ_P0029652 Slc16a11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029653.1 MGP_CASTEiJ_G0017892.1 mouse_genomes_project 11 70360183 70362481 + MGP_CASTEiJ_P0029653 Slc16a11 protein_coding protein_coding MGP_CASTEiJ_T0029654.1 MGP_CASTEiJ_G0017892.1 mouse_genomes_project 11 70360187 70362484 + MGP_CASTEiJ_P0029654 Slc16a11 protein_coding protein_coding MGP_CASTEiJ_T0029655.1 MGP_CASTEiJ_G0017892.1 mouse_genomes_project 11 70360187 70361599 + MGP_CASTEiJ_P0029655 Slc16a11 protein_coding protein_coding MGP_CASTEiJ_T0029656.1 MGP_CASTEiJ_G0017892.1 mouse_genomes_project 11 70360189 70361056 + MGP_CASTEiJ_P0029656 Slc16a11 protein_coding protein_coding MGP_CASTEiJ_T0029657.1 MGP_CASTEiJ_G0017892.1 mouse_genomes_project 11 70360190 70361742 + Slc16a11 protein_coding processed_transcript MGP_CASTEiJ_T0029658.1 MGP_CASTEiJ_G0017892.1 mouse_genomes_project 11 70360630 70361547 + Slc16a11 protein_coding retained_intron MGP_CASTEiJ_T0029659.1 MGP_CASTEiJ_G0017892.1 mouse_genomes_project 11 70360886 70362480 + Slc16a11 protein_coding retained_intron MGP_CASTEiJ_T0030132.1 MGP_CASTEiJ_G0018015.1 mouse_genomes_project 11 75842078 75894811 - MGP_CASTEiJ_P0030132 Rpa1 protein_coding protein_coding MGP_CASTEiJ_T0030133.1 MGP_CASTEiJ_G0018015.1 mouse_genomes_project 11 75844272 75894797 - MGP_CASTEiJ_P0030133 Rpa1 protein_coding protein_coding MGP_CASTEiJ_T0030134.1 MGP_CASTEiJ_G0018015.1 mouse_genomes_project 11 75845227 75888588 - Rpa1 protein_coding processed_transcript MGP_CASTEiJ_T0030135.1 MGP_CASTEiJ_G0018015.1 mouse_genomes_project 11 75859814 75894782 - Rpa1 protein_coding retained_intron MGP_CASTEiJ_T0030136.1 MGP_CASTEiJ_G0018015.1 mouse_genomes_project 11 75888377 75894780 - Rpa1 protein_coding processed_transcript MGP_CASTEiJ_T0012186.1 MGP_CASTEiJ_G0010349.1 mouse_genomes_project 11 24530831 24543562 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012221.1 MGP_CASTEiJ_G0010384.1 mouse_genomes_project 11 38959234 38959580 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029313.1 MGP_CASTEiJ_G0017819.1 mouse_genomes_project 11 69009316 69013883 + Slc25a35 protein_coding processed_transcript MGP_CASTEiJ_T0029314.1 MGP_CASTEiJ_G0017819.1 mouse_genomes_project 11 69009317 69016431 + MGP_CASTEiJ_P0029314 Slc25a35 protein_coding protein_coding MGP_CASTEiJ_T0029315.1 MGP_CASTEiJ_G0017819.1 mouse_genomes_project 11 69009329 69014252 + MGP_CASTEiJ_P0029315 Slc25a35 protein_coding unknown_likely_coding MGP_CASTEiJ_T0000802.1 MGP_CASTEiJ_G0000742.1 mouse_genomes_project 11 15756682 15757278 + TEC TEC MGP_CASTEiJ_T0012267.1 MGP_CASTEiJ_G0010430.1 mouse_genomes_project 11 57899829 57900113 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016506.1 MGP_CASTEiJ_G0014510.1 mouse_genomes_project 11 98626304 98643952 - Gm11529 processed_transcript processed_transcript MGP_CASTEiJ_T0031663.1 MGP_CASTEiJ_G0018369.1 mouse_genomes_project 11 100791524 100792808 - MGP_CASTEiJ_P0031663 Mien1 protein_coding protein_coding MGP_CASTEiJ_T0031718.1 MGP_CASTEiJ_G0018381.1 mouse_genomes_project 11 101264913 101272312 - MGP_CASTEiJ_P0031718 Nr1d1 protein_coding protein_coding MGP_CASTEiJ_T0031719.1 MGP_CASTEiJ_G0018381.1 mouse_genomes_project 11 101265062 101268219 - MGP_CASTEiJ_P0031719 Nr1d1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031720.1 MGP_CASTEiJ_G0018381.1 mouse_genomes_project 11 101266328 101267408 - Nr1d1 protein_coding processed_transcript MGP_CASTEiJ_T0029641.1 MGP_CASTEiJ_G0017890.1 mouse_genomes_project 11 70275858 70281607 + protein_coding processed_transcript MGP_CASTEiJ_T0029642.1 MGP_CASTEiJ_G0017890.1 mouse_genomes_project 11 70275872 70285144 + MGP_CASTEiJ_P0029642 protein_coding protein_coding MGP_CASTEiJ_T0029643.1 MGP_CASTEiJ_G0017890.1 mouse_genomes_project 11 70281335 70284975 + MGP_CASTEiJ_P0029643 protein_coding protein_coding MGP_CASTEiJ_T0030516.1 MGP_CASTEiJ_G0018091.1 mouse_genomes_project 11 79283477 79290478 - MGP_CASTEiJ_P0030516 Tmem199 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030517.1 MGP_CASTEiJ_G0018091.1 mouse_genomes_project 11 79285493 79290464 - MGP_CASTEiJ_P0030517 Tmem199 protein_coding protein_coding MGP_CASTEiJ_T0030518.1 MGP_CASTEiJ_G0018091.1 mouse_genomes_project 11 79285690 79287257 - Tmem199 protein_coding retained_intron MGP_CASTEiJ_T0030519.1 MGP_CASTEiJ_G0018091.1 mouse_genomes_project 11 79286946 79290337 - Tmem199 protein_coding retained_intron MGP_CASTEiJ_T0030520.1 MGP_CASTEiJ_G0018091.1 mouse_genomes_project 11 79287813 79290375 - Tmem199 protein_coding retained_intron MGP_CASTEiJ_T0030577.1 MGP_CASTEiJ_G0018109.1 mouse_genomes_project 11 80387174 80391202 - MGP_CASTEiJ_P0030577 Evi2a protein_coding protein_coding MGP_CASTEiJ_T0030578.1 MGP_CASTEiJ_G0018109.1 mouse_genomes_project 11 80387182 80391223 - MGP_CASTEiJ_P0030578 Evi2a protein_coding protein_coding MGP_CASTEiJ_T0030579.1 MGP_CASTEiJ_G0018109.1 mouse_genomes_project 11 80387574 80388393 - MGP_CASTEiJ_P0030579 Evi2a protein_coding protein_coding MGP_CASTEiJ_T0030580.1 MGP_CASTEiJ_G0018109.1 mouse_genomes_project 11 80388302 80388764 - MGP_CASTEiJ_P0030580 Evi2a protein_coding protein_coding MGP_CASTEiJ_T0030581.1 MGP_CASTEiJ_G0018109.1 mouse_genomes_project 11 80388685 80391223 - Evi2a protein_coding processed_transcript MGP_CASTEiJ_T0006062.1 MGP_CASTEiJ_G0005076.1 mouse_genomes_project 11 42768232 42770392 - Gm12154 lincRNA lincRNA MGP_CASTEiJ_T0099213.1 MGP_CASTEiJ_G0036126.1 mouse_genomes_project 11 2174947 2175054 + Gm25142 snRNA snRNA MGP_CASTEiJ_T0027761.1 MGP_CASTEiJ_G0017427.1 mouse_genomes_project 11 27533348 27586252 + MGP_CASTEiJ_P0027761 Rtn4 protein_coding protein_coding MGP_CASTEiJ_T0027762.1 MGP_CASTEiJ_G0017427.1 mouse_genomes_project 11 27533348 27587652 + MGP_CASTEiJ_P0027762 Rtn4 protein_coding protein_coding MGP_CASTEiJ_T0027763.1 MGP_CASTEiJ_G0017427.1 mouse_genomes_project 11 27533348 27586252 + MGP_CASTEiJ_P0027763 Rtn4 protein_coding protein_coding MGP_CASTEiJ_T0027764.1 MGP_CASTEiJ_G0017427.1 mouse_genomes_project 11 27533349 27585425 + MGP_CASTEiJ_P0027764 Rtn4 protein_coding protein_coding MGP_CASTEiJ_T0027765.1 MGP_CASTEiJ_G0017427.1 mouse_genomes_project 11 27533564 27577471 + MGP_CASTEiJ_P0027765 Rtn4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027766.1 MGP_CASTEiJ_G0017427.1 mouse_genomes_project 11 27534181 27586252 + MGP_CASTEiJ_P0027766 Rtn4 protein_coding protein_coding MGP_CASTEiJ_T0027767.1 MGP_CASTEiJ_G0017427.1 mouse_genomes_project 11 27560780 27586252 + MGP_CASTEiJ_P0027767 Rtn4 protein_coding protein_coding MGP_CASTEiJ_T0027768.1 MGP_CASTEiJ_G0017427.1 mouse_genomes_project 11 27575204 27585753 + Rtn4 protein_coding processed_transcript MGP_CASTEiJ_T0027769.1 MGP_CASTEiJ_G0017427.1 mouse_genomes_project 11 27575279 27585665 + Rtn4 protein_coding processed_transcript MGP_CASTEiJ_T0027770.1 MGP_CASTEiJ_G0017427.1 mouse_genomes_project 11 27577899 27585665 + Rtn4 protein_coding processed_transcript MGP_CASTEiJ_T0027771.1 MGP_CASTEiJ_G0017427.1 mouse_genomes_project 11 27584314 27585603 + Rtn4 protein_coding processed_transcript MGP_CASTEiJ_T0030047.1 MGP_CASTEiJ_G0017994.1 mouse_genomes_project 11 74637616 74644605 + protein_coding processed_transcript MGP_CASTEiJ_T0029184.1 MGP_CASTEiJ_G0017787.1 mouse_genomes_project 11 65702338 65724365 + MGP_CASTEiJ_P0029184 Zkscan6 protein_coding protein_coding MGP_CASTEiJ_T0029185.1 MGP_CASTEiJ_G0017787.1 mouse_genomes_project 11 65702377 65724154 + MGP_CASTEiJ_P0029185 Zkscan6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029186.1 MGP_CASTEiJ_G0017787.1 mouse_genomes_project 11 65702377 65724154 + MGP_CASTEiJ_P0029186 Zkscan6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029187.1 MGP_CASTEiJ_G0017787.1 mouse_genomes_project 11 65702407 65724366 + MGP_CASTEiJ_P0029187 Zkscan6 protein_coding protein_coding MGP_CASTEiJ_T0003082.1 MGP_CASTEiJ_G0002870.1 mouse_genomes_project 11 61153298 61154121 + Gm12272 antisense antisense MGP_CASTEiJ_T0033802.1 MGP_CASTEiJ_G0018831.1 mouse_genomes_project 11 125146130 125148202 + Gps1 protein_coding retained_intron MGP_CASTEiJ_T0033803.1 MGP_CASTEiJ_G0018831.1 mouse_genomes_project 11 125146133 125150966 + MGP_CASTEiJ_P0033803 Gps1 protein_coding protein_coding MGP_CASTEiJ_T0033804.1 MGP_CASTEiJ_G0018831.1 mouse_genomes_project 11 125146133 125150652 + MGP_CASTEiJ_P0033804 Gps1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033805.1 MGP_CASTEiJ_G0018831.1 mouse_genomes_project 11 125146434 125150975 + MGP_CASTEiJ_P0033805 Gps1 protein_coding protein_coding MGP_CASTEiJ_T0033806.1 MGP_CASTEiJ_G0018831.1 mouse_genomes_project 11 125148640 125149630 + Gps1 protein_coding retained_intron MGP_CASTEiJ_T0031288.1 MGP_CASTEiJ_G0018277.1 mouse_genomes_project 11 96629459 96639143 - MGP_CASTEiJ_P0031288 Gm11541 protein_coding protein_coding MGP_CASTEiJ_T0031422.1 MGP_CASTEiJ_G0018318.1 mouse_genomes_project 11 98645049 98956189 + MGP_CASTEiJ_P0031422 Skap1 protein_coding protein_coding MGP_CASTEiJ_T0031423.1 MGP_CASTEiJ_G0018318.1 mouse_genomes_project 11 98645049 98956000 + MGP_CASTEiJ_P0031423 Skap1 protein_coding protein_coding MGP_CASTEiJ_T0031424.1 MGP_CASTEiJ_G0018318.1 mouse_genomes_project 11 98645056 98678458 + MGP_CASTEiJ_P0031424 Skap1 protein_coding protein_coding MGP_CASTEiJ_T0031425.1 MGP_CASTEiJ_G0018318.1 mouse_genomes_project 11 98645080 98923815 + Skap1 protein_coding retained_intron MGP_CASTEiJ_T0031426.1 MGP_CASTEiJ_G0018318.1 mouse_genomes_project 11 98645083 98956000 + MGP_CASTEiJ_P0031426 Skap1 protein_coding protein_coding MGP_CASTEiJ_T0031427.1 MGP_CASTEiJ_G0018318.1 mouse_genomes_project 11 98645089 98770561 + MGP_CASTEiJ_P0031427 Skap1 protein_coding protein_coding MGP_CASTEiJ_T0031428.1 MGP_CASTEiJ_G0018318.1 mouse_genomes_project 11 98645137 98868094 + MGP_CASTEiJ_P0031428 Skap1 protein_coding protein_coding MGP_CASTEiJ_T0031429.1 MGP_CASTEiJ_G0018318.1 mouse_genomes_project 11 98667170 98678458 + Skap1 protein_coding processed_transcript MGP_CASTEiJ_T0031430.1 MGP_CASTEiJ_G0018318.1 mouse_genomes_project 11 98674675 98893324 + Skap1 protein_coding retained_intron MGP_CASTEiJ_T0031431.1 MGP_CASTEiJ_G0018318.1 mouse_genomes_project 11 98897129 98903018 + Skap1 protein_coding retained_intron MGP_CASTEiJ_T0033918.1 MGP_CASTEiJ_G0018856.1 mouse_genomes_project 11 126224668 126232072 + Ptchd3 protein_coding retained_intron MGP_CASTEiJ_T0033919.1 MGP_CASTEiJ_G0018856.1 mouse_genomes_project 11 126224668 126238708 + MGP_CASTEiJ_P0033919 Ptchd3 protein_coding protein_coding MGP_CASTEiJ_T0030168.1 MGP_CASTEiJ_G0018024.1 mouse_genomes_project 11 76084384 76097627 + MGP_CASTEiJ_P0030168 Slc43a2 protein_coding protein_coding MGP_CASTEiJ_T0030169.1 MGP_CASTEiJ_G0018024.1 mouse_genomes_project 11 76084388 76133980 + MGP_CASTEiJ_P0030169 Slc43a2 protein_coding protein_coding MGP_CASTEiJ_T0030170.1 MGP_CASTEiJ_G0018024.1 mouse_genomes_project 11 76084388 76128034 + MGP_CASTEiJ_P0030170 Slc43a2 protein_coding protein_coding MGP_CASTEiJ_T0030171.1 MGP_CASTEiJ_G0018024.1 mouse_genomes_project 11 76084433 76100082 + MGP_CASTEiJ_P0030171 Slc43a2 protein_coding protein_coding MGP_CASTEiJ_T0030172.1 MGP_CASTEiJ_G0018024.1 mouse_genomes_project 11 76084802 76133975 + MGP_CASTEiJ_P0030172 Slc43a2 protein_coding protein_coding MGP_CASTEiJ_T0030173.1 MGP_CASTEiJ_G0018024.1 mouse_genomes_project 11 76084828 76100135 + MGP_CASTEiJ_P0030173 Slc43a2 protein_coding protein_coding MGP_CASTEiJ_T0030174.1 MGP_CASTEiJ_G0018024.1 mouse_genomes_project 11 76090658 76100069 + Slc43a2 protein_coding processed_transcript MGP_CASTEiJ_T0030175.1 MGP_CASTEiJ_G0018024.1 mouse_genomes_project 11 76114924 76121205 + Slc43a2 protein_coding retained_intron MGP_CASTEiJ_T0030176.1 MGP_CASTEiJ_G0018024.1 mouse_genomes_project 11 76120144 76124327 + Slc43a2 protein_coding processed_transcript MGP_CASTEiJ_T0030177.1 MGP_CASTEiJ_G0018024.1 mouse_genomes_project 11 76120840 76126559 + Slc43a2 protein_coding retained_intron MGP_CASTEiJ_T0030178.1 MGP_CASTEiJ_G0018024.1 mouse_genomes_project 11 76120953 76125937 + Slc43a2 protein_coding processed_transcript MGP_CASTEiJ_T0003213.1 MGP_CASTEiJ_G0002975.1 mouse_genomes_project 11 110530479 110537864 + Gm11716 antisense antisense MGP_CASTEiJ_T0003154.1 MGP_CASTEiJ_G0002926.1 mouse_genomes_project 11 97095805 97101309 + Gm11513 antisense antisense MGP_CASTEiJ_T0029601.1 MGP_CASTEiJ_G0017884.1 mouse_genomes_project 11 70123651 70128890 + MGP_CASTEiJ_P0029601 Phf23 protein_coding protein_coding MGP_CASTEiJ_T0029602.1 MGP_CASTEiJ_G0017884.1 mouse_genomes_project 11 70123700 70128363 + MGP_CASTEiJ_P0029602 Phf23 protein_coding protein_coding MGP_CASTEiJ_T0029603.1 MGP_CASTEiJ_G0017884.1 mouse_genomes_project 11 70123769 70127257 + Phf23 protein_coding retained_intron MGP_CASTEiJ_T0029604.1 MGP_CASTEiJ_G0017884.1 mouse_genomes_project 11 70124504 70127632 + MGP_CASTEiJ_P0029604 Phf23 protein_coding protein_coding MGP_CASTEiJ_T0033534.1 MGP_CASTEiJ_G0018783.1 mouse_genomes_project 11 123587298 123601216 - MGP_CASTEiJ_P0033534 Sgsh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033535.1 MGP_CASTEiJ_G0018783.1 mouse_genomes_project 11 123587354 123601250 - MGP_CASTEiJ_P0033535 Sgsh protein_coding protein_coding MGP_CASTEiJ_T0033536.1 MGP_CASTEiJ_G0018783.1 mouse_genomes_project 11 123587370 123601224 - MGP_CASTEiJ_P0033536 Sgsh protein_coding protein_coding MGP_CASTEiJ_T0033537.1 MGP_CASTEiJ_G0018783.1 mouse_genomes_project 11 123590115 123601244 - Sgsh protein_coding processed_transcript MGP_CASTEiJ_T0033538.1 MGP_CASTEiJ_G0018783.1 mouse_genomes_project 11 123590291 123591857 - Sgsh protein_coding processed_transcript MGP_CASTEiJ_T0033539.1 MGP_CASTEiJ_G0018783.1 mouse_genomes_project 11 123590672 123598538 - Sgsh protein_coding processed_transcript MGP_CASTEiJ_T0029297.1 MGP_CASTEiJ_G0017816.1 mouse_genomes_project 11 68935475 68938422 + MGP_CASTEiJ_P0029297 Rpl26 protein_coding protein_coding MGP_CASTEiJ_T0029298.1 MGP_CASTEiJ_G0017816.1 mouse_genomes_project 11 68935502 68938398 + MGP_CASTEiJ_P0029298 Rpl26 protein_coding protein_coding MGP_CASTEiJ_T0029299.1 MGP_CASTEiJ_G0017816.1 mouse_genomes_project 11 68935519 68937207 + MGP_CASTEiJ_P0029299 Rpl26 protein_coding protein_coding MGP_CASTEiJ_T0029300.1 MGP_CASTEiJ_G0017816.1 mouse_genomes_project 11 68935527 68938421 + MGP_CASTEiJ_P0029300 Rpl26 protein_coding protein_coding MGP_CASTEiJ_T0029301.1 MGP_CASTEiJ_G0017816.1 mouse_genomes_project 11 68936740 68938421 + Rpl26 protein_coding retained_intron MGP_CASTEiJ_T0029302.1 MGP_CASTEiJ_G0017816.1 mouse_genomes_project 11 68937121 68940876 + Rpl26 protein_coding processed_transcript MGP_CASTEiJ_T0032639.1 MGP_CASTEiJ_G0018611.1 mouse_genomes_project 11 109485310 109490567 - MGP_CASTEiJ_P0032639 Icam2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032640.1 MGP_CASTEiJ_G0018611.1 mouse_genomes_project 11 109486217 109488416 - MGP_CASTEiJ_P0032640 Icam2 protein_coding protein_coding MGP_CASTEiJ_T0032641.1 MGP_CASTEiJ_G0018611.1 mouse_genomes_project 11 109486463 109497254 - MGP_CASTEiJ_P0032641 Icam2 protein_coding protein_coding MGP_CASTEiJ_T0032642.1 MGP_CASTEiJ_G0018611.1 mouse_genomes_project 11 109488302 109497257 - MGP_CASTEiJ_P0032642 Icam2 protein_coding protein_coding MGP_CASTEiJ_T0032643.1 MGP_CASTEiJ_G0018611.1 mouse_genomes_project 11 109488659 109490611 - Icam2 protein_coding retained_intron MGP_CASTEiJ_T0033593.1 MGP_CASTEiJ_G0018792.1 mouse_genomes_project 11 124346272 124373569 - MGP_CASTEiJ_P0033593 Cep131 protein_coding protein_coding MGP_CASTEiJ_T0033594.1 MGP_CASTEiJ_G0018792.1 mouse_genomes_project 11 124346276 124346811 - Cep131 protein_coding processed_transcript MGP_CASTEiJ_T0033595.1 MGP_CASTEiJ_G0018792.1 mouse_genomes_project 11 124346481 124349900 - Cep131 protein_coding processed_transcript MGP_CASTEiJ_T0033596.1 MGP_CASTEiJ_G0018792.1 mouse_genomes_project 11 124348975 124352829 - Cep131 protein_coding processed_transcript MGP_CASTEiJ_T0033597.1 MGP_CASTEiJ_G0018792.1 mouse_genomes_project 11 124349931 124353946 - Cep131 protein_coding processed_transcript MGP_CASTEiJ_T0030587.1 MGP_CASTEiJ_G0018111.1 mouse_genomes_project 11 80811430 80844410 - MGP_CASTEiJ_P0030587 Utp6 protein_coding protein_coding MGP_CASTEiJ_T0030588.1 MGP_CASTEiJ_G0018111.1 mouse_genomes_project 11 80813048 80844421 - MGP_CASTEiJ_P0030588 Utp6 protein_coding protein_coding MGP_CASTEiJ_T0030589.1 MGP_CASTEiJ_G0018111.1 mouse_genomes_project 11 80814953 80823970 - Utp6 protein_coding retained_intron MGP_CASTEiJ_T0030590.1 MGP_CASTEiJ_G0018111.1 mouse_genomes_project 11 80840453 80844398 - Utp6 protein_coding retained_intron MGP_CASTEiJ_T0029583.1 MGP_CASTEiJ_G0017881.1 mouse_genomes_project 11 70095263 70107074 - MGP_CASTEiJ_P0029583 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029584.1 MGP_CASTEiJ_G0017881.1 mouse_genomes_project 11 70095269 70107065 - protein_coding retained_intron MGP_CASTEiJ_T0029585.1 MGP_CASTEiJ_G0017881.1 mouse_genomes_project 11 70095272 70109480 - MGP_CASTEiJ_P0029585 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029586.1 MGP_CASTEiJ_G0017881.1 mouse_genomes_project 11 70095273 70096443 - protein_coding retained_intron MGP_CASTEiJ_T0029587.1 MGP_CASTEiJ_G0017881.1 mouse_genomes_project 11 70096282 70106863 - MGP_CASTEiJ_P0029587 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029588.1 MGP_CASTEiJ_G0017881.1 mouse_genomes_project 11 70096554 70107063 - protein_coding retained_intron MGP_CASTEiJ_T0029589.1 MGP_CASTEiJ_G0017881.1 mouse_genomes_project 11 70097756 70107013 - protein_coding retained_intron MGP_CASTEiJ_T0029590.1 MGP_CASTEiJ_G0017881.1 mouse_genomes_project 11 70097774 70109889 - MGP_CASTEiJ_P0029590 protein_coding protein_coding MGP_CASTEiJ_T0029591.1 MGP_CASTEiJ_G0017881.1 mouse_genomes_project 11 70101909 70110767 - MGP_CASTEiJ_P0029591 protein_coding protein_coding MGP_CASTEiJ_T0029592.1 MGP_CASTEiJ_G0017881.1 mouse_genomes_project 11 70106836 70107498 - MGP_CASTEiJ_P0029592 protein_coding protein_coding MGP_CASTEiJ_T0003258.1 MGP_CASTEiJ_G0003009.1 mouse_genomes_project 11 125041743 125066212 - Gm17178 antisense antisense MGP_CASTEiJ_T0027079.1 MGP_CASTEiJ_G0017280.1 mouse_genomes_project 11 743950 752982 - MGP_CASTEiJ_P0027079 4921536K21Rik protein_coding protein_coding MGP_CASTEiJ_T0009477.1 MGP_CASTEiJ_G0007665.1 mouse_genomes_project 11 84190117 84190180 - Mir7679 miRNA miRNA MGP_CASTEiJ_T0031264.1 MGP_CASTEiJ_G0018270.1 mouse_genomes_project 11 96461435 96470886 - Rsad1 protein_coding processed_transcript MGP_CASTEiJ_T0031265.1 MGP_CASTEiJ_G0018270.1 mouse_genomes_project 11 96463699 96470783 - MGP_CASTEiJ_P0031265 Rsad1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031266.1 MGP_CASTEiJ_G0018270.1 mouse_genomes_project 11 96466172 96470423 - Rsad1 protein_coding processed_transcript MGP_CASTEiJ_T0031267.1 MGP_CASTEiJ_G0018270.1 mouse_genomes_project 11 96466237 96470233 - Rsad1 protein_coding processed_transcript MGP_CASTEiJ_T0032985.1 MGP_CASTEiJ_G0018686.1 mouse_genomes_project 11 119221569 119242826 - MGP_CASTEiJ_P0032985 Hid1 protein_coding protein_coding MGP_CASTEiJ_T0032986.1 MGP_CASTEiJ_G0018686.1 mouse_genomes_project 11 119221569 119242863 - MGP_CASTEiJ_P0032986 Hid1 protein_coding protein_coding MGP_CASTEiJ_T0032987.1 MGP_CASTEiJ_G0018686.1 mouse_genomes_project 11 119222240 119242737 - MGP_CASTEiJ_P0032987 Hid1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032988.1 MGP_CASTEiJ_G0018686.1 mouse_genomes_project 11 119222872 119224865 - Hid1 protein_coding processed_transcript MGP_CASTEiJ_T0032989.1 MGP_CASTEiJ_G0018686.1 mouse_genomes_project 11 119229322 119230571 - Hid1 protein_coding processed_transcript MGP_CASTEiJ_T0032990.1 MGP_CASTEiJ_G0018686.1 mouse_genomes_project 11 119230556 119242774 - MGP_CASTEiJ_P0032990 Hid1 protein_coding protein_coding MGP_CASTEiJ_T0032991.1 MGP_CASTEiJ_G0018686.1 mouse_genomes_project 11 119231879 119235474 - Hid1 protein_coding processed_transcript MGP_CASTEiJ_T0032992.1 MGP_CASTEiJ_G0018686.1 mouse_genomes_project 11 119231974 119242716 - Hid1 protein_coding processed_transcript MGP_CASTEiJ_T0032993.1 MGP_CASTEiJ_G0018686.1 mouse_genomes_project 11 119233836 119234477 - Hid1 protein_coding processed_transcript MGP_CASTEiJ_T0031822.1 MGP_CASTEiJ_G0018435.1 mouse_genomes_project 11 102550436 102552637 + MGP_CASTEiJ_P0031822 Krtap9-5 protein_coding protein_coding MGP_CASTEiJ_T0029155.1 MGP_CASTEiJ_G0017781.1 mouse_genomes_project 11 64265241 64365369 + MGP_CASTEiJ_P0029155 Hs3st3a1 protein_coding protein_coding MGP_CASTEiJ_T0029156.1 MGP_CASTEiJ_G0017781.1 mouse_genomes_project 11 64266151 64368086 + MGP_CASTEiJ_P0029156 Hs3st3a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032195.1 MGP_CASTEiJ_G0018524.1 mouse_genomes_project 11 104854818 104889215 - MGP_CASTEiJ_P0032195 Mpp2 protein_coding protein_coding MGP_CASTEiJ_T0032196.1 MGP_CASTEiJ_G0018524.1 mouse_genomes_project 11 104855330 104881776 - MGP_CASTEiJ_P0032196 Mpp2 protein_coding protein_coding MGP_CASTEiJ_T0032197.1 MGP_CASTEiJ_G0018524.1 mouse_genomes_project 11 104859910 104881711 - Mpp2 protein_coding processed_transcript MGP_CASTEiJ_T0032198.1 MGP_CASTEiJ_G0018524.1 mouse_genomes_project 11 104862498 104885022 - Mpp2 protein_coding retained_intron MGP_CASTEiJ_T0032199.1 MGP_CASTEiJ_G0018524.1 mouse_genomes_project 11 104879942 104889167 - Mpp2 protein_coding processed_transcript MGP_CASTEiJ_T0032200.1 MGP_CASTEiJ_G0018524.1 mouse_genomes_project 11 104879996 104889155 - Mpp2 protein_coding processed_transcript MGP_CASTEiJ_T0098453.1 MGP_CASTEiJ_G0035384.1 mouse_genomes_project 11 3253438 3253552 + n-R5s67 rRNA rRNA MGP_CASTEiJ_T0011469.1 MGP_CASTEiJ_G0009654.1 mouse_genomes_project 11 120196338 120200214 + MGP_CASTEiJ_P0011469 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0011470.1 MGP_CASTEiJ_G0009654.1 mouse_genomes_project 11 120196820 120197519 + polymorphic_pseudogene processed_transcript MGP_CASTEiJ_T0011471.1 MGP_CASTEiJ_G0009654.1 mouse_genomes_project 11 120196874 120200732 + polymorphic_pseudogene processed_transcript MGP_CASTEiJ_T0031816.1 MGP_CASTEiJ_G0018429.1 mouse_genomes_project 11 102454171 102455068 - MGP_CASTEiJ_P0031816 Krtap4-16 protein_coding protein_coding MGP_CASTEiJ_T0028616.1 MGP_CASTEiJ_G0017647.1 mouse_genomes_project 11 54633825 54648824 - MGP_CASTEiJ_P0028616 Atox1 protein_coding protein_coding MGP_CASTEiJ_T0028617.1 MGP_CASTEiJ_G0017647.1 mouse_genomes_project 11 54633828 54648782 - Atox1 protein_coding processed_transcript MGP_CASTEiJ_T0032039.1 MGP_CASTEiJ_G0018494.1 mouse_genomes_project 11 103980401 103986614 + MGP_CASTEiJ_P0032039 Vps25 protein_coding protein_coding MGP_CASTEiJ_T0032040.1 MGP_CASTEiJ_G0018494.1 mouse_genomes_project 11 103980524 103985110 + MGP_CASTEiJ_P0032040 Vps25 protein_coding protein_coding MGP_CASTEiJ_T0032041.1 MGP_CASTEiJ_G0018494.1 mouse_genomes_project 11 103980546 103986604 + MGP_CASTEiJ_P0032041 Vps25 protein_coding protein_coding MGP_CASTEiJ_T0032042.1 MGP_CASTEiJ_G0018494.1 mouse_genomes_project 11 103980547 103985975 + MGP_CASTEiJ_P0032042 Vps25 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032043.1 MGP_CASTEiJ_G0018494.1 mouse_genomes_project 11 103980552 103986382 + MGP_CASTEiJ_P0032043 Vps25 protein_coding protein_coding MGP_CASTEiJ_T0032044.1 MGP_CASTEiJ_G0018494.1 mouse_genomes_project 11 103980570 103986115 + MGP_CASTEiJ_P0032044 Vps25 protein_coding protein_coding MGP_CASTEiJ_T0032045.1 MGP_CASTEiJ_G0018494.1 mouse_genomes_project 11 103980581 103986269 + Vps25 protein_coding retained_intron MGP_CASTEiJ_T0006141.1 MGP_CASTEiJ_G0005137.1 mouse_genomes_project 11 89572917 89583010 - 2010015M23Rik lincRNA lincRNA MGP_CASTEiJ_T0010988.1 MGP_CASTEiJ_G0009176.1 mouse_genomes_project 11 121210385 121210713 + Gm22667 misc_RNA misc_RNA MGP_CASTEiJ_T0012242.1 MGP_CASTEiJ_G0010405.1 mouse_genomes_project 11 49120464 49120721 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012350.1 MGP_CASTEiJ_G0010513.1 mouse_genomes_project 11 89452488 89452661 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006021.1 MGP_CASTEiJ_G0005041.1 mouse_genomes_project 11 20018448 20026244 + Gm12051 lincRNA lincRNA MGP_CASTEiJ_T0027742.1 MGP_CASTEiJ_G0017423.1 mouse_genomes_project 11 27336375 27341046 - MGP_CASTEiJ_P0027742 Prorsd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027743.1 MGP_CASTEiJ_G0017423.1 mouse_genomes_project 11 27337654 27340918 - MGP_CASTEiJ_P0027743 Prorsd1 protein_coding protein_coding MGP_CASTEiJ_T0027744.1 MGP_CASTEiJ_G0017423.1 mouse_genomes_project 11 27338772 27340920 - MGP_CASTEiJ_P0027744 Prorsd1 protein_coding protein_coding MGP_CASTEiJ_T0028815.1 MGP_CASTEiJ_G0017717.1 mouse_genomes_project 11 59324921 59325812 - Cops3 protein_coding processed_transcript MGP_CASTEiJ_T0028816.1 MGP_CASTEiJ_G0017717.1 mouse_genomes_project 11 59324921 59346649 - MGP_CASTEiJ_P0028816 Cops3 protein_coding protein_coding MGP_CASTEiJ_T0028817.1 MGP_CASTEiJ_G0017717.1 mouse_genomes_project 11 59328418 59343937 - MGP_CASTEiJ_P0028817 Cops3 protein_coding protein_coding MGP_CASTEiJ_T0028818.1 MGP_CASTEiJ_G0017717.1 mouse_genomes_project 11 59330303 59346649 - Cops3 protein_coding processed_transcript MGP_CASTEiJ_T0028819.1 MGP_CASTEiJ_G0017717.1 mouse_genomes_project 11 59331338 59340278 - Cops3 protein_coding processed_transcript MGP_CASTEiJ_T0028820.1 MGP_CASTEiJ_G0017717.1 mouse_genomes_project 11 59333234 59346649 - Cops3 protein_coding processed_transcript MGP_CASTEiJ_T0028821.1 MGP_CASTEiJ_G0017717.1 mouse_genomes_project 11 59340075 59346563 - MGP_CASTEiJ_P0028821 Cops3 protein_coding protein_coding MGP_CASTEiJ_T0028822.1 MGP_CASTEiJ_G0017717.1 mouse_genomes_project 11 59343639 59346623 - Cops3 protein_coding processed_transcript MGP_CASTEiJ_T0029917.1 MGP_CASTEiJ_G0017944.1 mouse_genomes_project 11 72678029 72685376 + MGP_CASTEiJ_P0029917 Fbxo39 protein_coding protein_coding MGP_CASTEiJ_T0012201.1 MGP_CASTEiJ_G0010364.1 mouse_genomes_project 11 28462885 28463371 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003096.1 MGP_CASTEiJ_G0002882.1 mouse_genomes_project 11 63821653 63824284 + Gm12289 antisense antisense MGP_CASTEiJ_T0012301.1 MGP_CASTEiJ_G0010464.1 mouse_genomes_project 11 70595622 70596160 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032966.1 MGP_CASTEiJ_G0018679.1 mouse_genomes_project 11 119049161 119113295 + MGP_CASTEiJ_P0032966 Tmem104 protein_coding protein_coding MGP_CASTEiJ_T0032967.1 MGP_CASTEiJ_G0018679.1 mouse_genomes_project 11 119049161 119113295 + MGP_CASTEiJ_P0032967 Tmem104 protein_coding protein_coding MGP_CASTEiJ_T0032968.1 MGP_CASTEiJ_G0018679.1 mouse_genomes_project 11 119049185 119059713 + Tmem104 protein_coding processed_transcript MGP_CASTEiJ_T0032969.1 MGP_CASTEiJ_G0018679.1 mouse_genomes_project 11 119049225 119112037 + Tmem104 protein_coding processed_transcript MGP_CASTEiJ_T0028696.1 MGP_CASTEiJ_G0017678.1 mouse_genomes_project 11 57909164 57912144 - MGP_CASTEiJ_P0028696 protein_coding protein_coding MGP_CASTEiJ_T0029213.1 MGP_CASTEiJ_G0017795.1 mouse_genomes_project 11 67100791 67134642 + MGP_CASTEiJ_P0029213 protein_coding protein_coding MGP_CASTEiJ_T0029214.1 MGP_CASTEiJ_G0017795.1 mouse_genomes_project 11 67100830 67104387 + protein_coding retained_intron MGP_CASTEiJ_T0029215.1 MGP_CASTEiJ_G0017795.1 mouse_genomes_project 11 67100984 67134639 + MGP_CASTEiJ_P0029215 protein_coding protein_coding MGP_CASTEiJ_T0016522.1 MGP_CASTEiJ_G0014520.1 mouse_genomes_project 11 101172649 101173144 - Gm12356 processed_transcript processed_transcript MGP_CASTEiJ_T0012384.1 MGP_CASTEiJ_G0010547.1 mouse_genomes_project 11 104916055 104916380 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032860.1 MGP_CASTEiJ_G0018654.1 mouse_genomes_project 11 117314420 117321079 + MGP_CASTEiJ_P0032860 Sstr2 protein_coding protein_coding MGP_CASTEiJ_T0032861.1 MGP_CASTEiJ_G0018654.1 mouse_genomes_project 11 117314554 117320949 + MGP_CASTEiJ_P0032861 Sstr2 protein_coding protein_coding MGP_CASTEiJ_T0032862.1 MGP_CASTEiJ_G0018654.1 mouse_genomes_project 11 117319310 117320690 + MGP_CASTEiJ_P0032862 Sstr2 protein_coding protein_coding MGP_CASTEiJ_T0032906.1 MGP_CASTEiJ_G0018664.1 mouse_genomes_project 11 118582807 118604380 + Kif19a protein_coding processed_transcript MGP_CASTEiJ_T0032907.1 MGP_CASTEiJ_G0018664.1 mouse_genomes_project 11 118582807 118604380 + Kif19a protein_coding processed_transcript MGP_CASTEiJ_T0032908.1 MGP_CASTEiJ_G0018664.1 mouse_genomes_project 11 118582807 118606340 + MGP_CASTEiJ_P0032908 Kif19a protein_coding protein_coding MGP_CASTEiJ_T0032909.1 MGP_CASTEiJ_G0018664.1 mouse_genomes_project 11 118582808 118608781 + MGP_CASTEiJ_P0032909 Kif19a protein_coding protein_coding MGP_CASTEiJ_T0032910.1 MGP_CASTEiJ_G0018664.1 mouse_genomes_project 11 118582829 118608622 + MGP_CASTEiJ_P0032910 Kif19a protein_coding unknown_likely_coding MGP_CASTEiJ_T0032911.1 MGP_CASTEiJ_G0018664.1 mouse_genomes_project 11 118602859 118603768 + Kif19a protein_coding retained_intron MGP_CASTEiJ_T0032912.1 MGP_CASTEiJ_G0018664.1 mouse_genomes_project 11 118606107 118608945 + MGP_CASTEiJ_P0032912 Kif19a protein_coding protein_coding MGP_CASTEiJ_T0032913.1 MGP_CASTEiJ_G0018664.1 mouse_genomes_project 11 118606149 118607538 + Kif19a protein_coding retained_intron MGP_CASTEiJ_T0009487.1 MGP_CASTEiJ_G0007675.1 mouse_genomes_project 11 98425537 98425639 + Mir196a-1 miRNA miRNA MGP_CASTEiJ_T0027111.1 MGP_CASTEiJ_G0017289.1 mouse_genomes_project 11 946173 950125 - MGP_CASTEiJ_P0027111 Mtfp1 protein_coding protein_coding MGP_CASTEiJ_T0027112.1 MGP_CASTEiJ_G0017289.1 mouse_genomes_project 11 949114 949821 - Mtfp1 protein_coding processed_transcript MGP_CASTEiJ_T0032649.1 MGP_CASTEiJ_G0018613.1 mouse_genomes_project 11 109628467 109743812 - MGP_CASTEiJ_P0032649 Tex2 protein_coding protein_coding MGP_CASTEiJ_T0032650.1 MGP_CASTEiJ_G0018613.1 mouse_genomes_project 11 109672430 109708139 - MGP_CASTEiJ_P0032650 Tex2 protein_coding protein_coding MGP_CASTEiJ_T0032651.1 MGP_CASTEiJ_G0018613.1 mouse_genomes_project 11 109697610 109744305 - MGP_CASTEiJ_P0032651 Tex2 protein_coding protein_coding MGP_CASTEiJ_T0032652.1 MGP_CASTEiJ_G0018613.1 mouse_genomes_project 11 109697995 109710969 - MGP_CASTEiJ_P0032652 Tex2 protein_coding protein_coding MGP_CASTEiJ_T0003241.1 MGP_CASTEiJ_G0002996.1 mouse_genomes_project 11 121916156 121917889 - Gm11723 antisense antisense MGP_CASTEiJ_T0012169.1 MGP_CASTEiJ_G0010332.1 mouse_genomes_project 11 18671463 18672075 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027368.1 MGP_CASTEiJ_G0017344.1 mouse_genomes_project 11 3647222 3659020 - MGP_CASTEiJ_P0027368 Tbrg4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027369.1 MGP_CASTEiJ_G0017344.1 mouse_genomes_project 11 3647223 3659044 - MGP_CASTEiJ_P0027369 Tbrg4 protein_coding protein_coding MGP_CASTEiJ_T0027370.1 MGP_CASTEiJ_G0017344.1 mouse_genomes_project 11 3648040 3659020 - MGP_CASTEiJ_P0027370 Tbrg4 protein_coding protein_coding MGP_CASTEiJ_T0027371.1 MGP_CASTEiJ_G0017344.1 mouse_genomes_project 11 3648042 3659020 - MGP_CASTEiJ_P0027371 Tbrg4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027372.1 MGP_CASTEiJ_G0017344.1 mouse_genomes_project 11 3648871 3651017 - Tbrg4 protein_coding retained_intron MGP_CASTEiJ_T0027373.1 MGP_CASTEiJ_G0017344.1 mouse_genomes_project 11 3652545 3653896 - Tbrg4 protein_coding processed_transcript MGP_CASTEiJ_T0027374.1 MGP_CASTEiJ_G0017344.1 mouse_genomes_project 11 3652575 3653422 - Tbrg4 protein_coding retained_intron MGP_CASTEiJ_T0027375.1 MGP_CASTEiJ_G0017344.1 mouse_genomes_project 11 3652978 3654232 - Tbrg4 protein_coding retained_intron MGP_CASTEiJ_T0027376.1 MGP_CASTEiJ_G0017344.1 mouse_genomes_project 11 3653156 3654046 - Tbrg4 protein_coding processed_transcript MGP_CASTEiJ_T0027377.1 MGP_CASTEiJ_G0017344.1 mouse_genomes_project 11 3653977 3659044 - MGP_CASTEiJ_P0027377 Tbrg4 protein_coding protein_coding MGP_CASTEiJ_T0027378.1 MGP_CASTEiJ_G0017344.1 mouse_genomes_project 11 3656171 3658999 - Tbrg4 protein_coding processed_transcript MGP_CASTEiJ_T0027379.1 MGP_CASTEiJ_G0017344.1 mouse_genomes_project 11 3656864 3658449 - MGP_CASTEiJ_P0027379 Tbrg4 protein_coding protein_coding MGP_CASTEiJ_T0099259.1 MGP_CASTEiJ_G0036172.1 mouse_genomes_project 11 86843828 86843975 + Gm23765 snRNA snRNA MGP_CASTEiJ_T0032227.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105004152 105041182 - MGP_CASTEiJ_P0032227 Hdac5 protein_coding protein_coding MGP_CASTEiJ_T0032228.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105005462 105041140 - MGP_CASTEiJ_P0032228 Hdac5 protein_coding protein_coding MGP_CASTEiJ_T0032229.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105005465 105006904 - Hdac5 protein_coding retained_intron MGP_CASTEiJ_T0032230.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105005467 105006277 - Hdac5 protein_coding retained_intron MGP_CASTEiJ_T0032231.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105005467 105007587 - Hdac5 protein_coding retained_intron MGP_CASTEiJ_T0032232.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105005467 105029508 - Hdac5 protein_coding retained_intron MGP_CASTEiJ_T0032233.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105005467 105006287 - MGP_CASTEiJ_P0032233 Hdac5 protein_coding protein_coding MGP_CASTEiJ_T0032234.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105005467 105041155 - MGP_CASTEiJ_P0032234 Hdac5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032235.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105005469 105041152 - MGP_CASTEiJ_P0032235 Hdac5 protein_coding protein_coding MGP_CASTEiJ_T0032236.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105005469 105041182 - MGP_CASTEiJ_P0032236 Hdac5 protein_coding protein_coding MGP_CASTEiJ_T0032237.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105005955 105007798 - Hdac5 protein_coding retained_intron MGP_CASTEiJ_T0032238.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105006399 105008617 - Hdac5 protein_coding retained_intron MGP_CASTEiJ_T0032239.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105008401 105009215 - Hdac5 protein_coding retained_intron MGP_CASTEiJ_T0032240.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105008685 105010080 - Hdac5 protein_coding retained_intron MGP_CASTEiJ_T0032241.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105009111 105010539 - Hdac5 protein_coding retained_intron MGP_CASTEiJ_T0032242.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105015623 105041158 - MGP_CASTEiJ_P0032242 Hdac5 protein_coding protein_coding MGP_CASTEiJ_T0032243.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105016364 105029507 - MGP_CASTEiJ_P0032243 Hdac5 protein_coding protein_coding MGP_CASTEiJ_T0032244.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105016744 105029508 - Hdac5 protein_coding retained_intron MGP_CASTEiJ_T0032245.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105029289 105041149 - Hdac5 protein_coding processed_transcript MGP_CASTEiJ_T0032246.1 MGP_CASTEiJ_G0018531.1 mouse_genomes_project 11 105029731 105041162 - Hdac5 protein_coding processed_transcript MGP_CASTEiJ_T0031338.1 MGP_CASTEiJ_G0018290.1 mouse_genomes_project 11 97419233 97467102 + MGP_CASTEiJ_P0031338 Fam117a protein_coding protein_coding MGP_CASTEiJ_T0031339.1 MGP_CASTEiJ_G0018290.1 mouse_genomes_project 11 97419235 97460319 + Fam117a protein_coding processed_transcript MGP_CASTEiJ_T0031340.1 MGP_CASTEiJ_G0018290.1 mouse_genomes_project 11 97422154 97460868 + Fam117a protein_coding processed_transcript MGP_CASTEiJ_T0031341.1 MGP_CASTEiJ_G0018290.1 mouse_genomes_project 11 97422156 97447059 + Fam117a protein_coding processed_transcript MGP_CASTEiJ_T0031342.1 MGP_CASTEiJ_G0018290.1 mouse_genomes_project 11 97422185 97460323 + Fam117a protein_coding processed_transcript MGP_CASTEiJ_T0031343.1 MGP_CASTEiJ_G0018290.1 mouse_genomes_project 11 97460702 97462820 + Fam117a protein_coding processed_transcript MGP_CASTEiJ_T0029903.1 MGP_CASTEiJ_G0017940.1 mouse_genomes_project 11 72567328 72569795 + MGP_CASTEiJ_P0029903 Txndc17 protein_coding protein_coding MGP_CASTEiJ_T0029904.1 MGP_CASTEiJ_G0017940.1 mouse_genomes_project 11 72567396 72568457 + Txndc17 protein_coding retained_intron MGP_CASTEiJ_T0006117.1 MGP_CASTEiJ_G0005121.1 mouse_genomes_project 11 77226059 77235187 + Gm26780 lincRNA lincRNA MGP_CASTEiJ_T0012138.1 MGP_CASTEiJ_G0010301.1 mouse_genomes_project 11 10251968 10252686 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032367.1 MGP_CASTEiJ_G0018551.1 mouse_genomes_project 11 105737920 105785043 - MGP_CASTEiJ_P0032367 Eftud2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032370.1 MGP_CASTEiJ_G0018551.1 mouse_genomes_project 11 105740533 105785040 - MGP_CASTEiJ_P0032370 Eftud2 protein_coding protein_coding MGP_CASTEiJ_T0032371.1 MGP_CASTEiJ_G0018551.1 mouse_genomes_project 11 105740533 105785058 - MGP_CASTEiJ_P0032371 Eftud2 protein_coding protein_coding MGP_CASTEiJ_T0032372.1 MGP_CASTEiJ_G0018551.1 mouse_genomes_project 11 105740537 105746219 - MGP_CASTEiJ_P0032372 Eftud2 protein_coding protein_coding MGP_CASTEiJ_T0032373.1 MGP_CASTEiJ_G0018551.1 mouse_genomes_project 11 105740861 105781773 - MGP_CASTEiJ_P0032373 Eftud2 protein_coding protein_coding MGP_CASTEiJ_T0032374.1 MGP_CASTEiJ_G0018551.1 mouse_genomes_project 11 105740898 105743307 - MGP_CASTEiJ_P0032374 Eftud2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032375.1 MGP_CASTEiJ_G0018551.1 mouse_genomes_project 11 105741510 105742735 - Eftud2 protein_coding retained_intron MGP_CASTEiJ_T0032376.1 MGP_CASTEiJ_G0018551.1 mouse_genomes_project 11 105742270 105750034 - Eftud2 protein_coding retained_intron MGP_CASTEiJ_T0032377.1 MGP_CASTEiJ_G0018551.1 mouse_genomes_project 11 105751258 105762240 - Eftud2 protein_coding retained_intron MGP_CASTEiJ_T0032378.1 MGP_CASTEiJ_G0018551.1 mouse_genomes_project 11 105764631 105781749 - MGP_CASTEiJ_P0032378 Eftud2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032379.1 MGP_CASTEiJ_G0018551.1 mouse_genomes_project 11 105765868 105768005 - Eftud2 protein_coding retained_intron MGP_CASTEiJ_T0032380.1 MGP_CASTEiJ_G0018551.1 mouse_genomes_project 11 105767897 105785037 - Eftud2 protein_coding retained_intron MGP_CASTEiJ_T0032381.1 MGP_CASTEiJ_G0018551.1 mouse_genomes_project 11 105773546 105781774 - Eftud2 protein_coding retained_intron MGP_CASTEiJ_T0032382.1 MGP_CASTEiJ_G0018551.1 mouse_genomes_project 11 105781022 105785008 - Eftud2 protein_coding retained_intron MGP_CASTEiJ_T0099249.1 MGP_CASTEiJ_G0036162.1 mouse_genomes_project 11 75449297 75449388 - Gm22733 snRNA snRNA MGP_CASTEiJ_T0016452.1 MGP_CASTEiJ_G0014481.1 mouse_genomes_project 11 47566041 47577735 - Gm16170 processed_transcript processed_transcript MGP_CASTEiJ_T0012281.1 MGP_CASTEiJ_G0010444.1 mouse_genomes_project 11 61650731 61651116 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028943.1 MGP_CASTEiJ_G0017742.1 mouse_genomes_project 11 60738072 60762916 + MGP_CASTEiJ_P0028943 Tnfrsf13b protein_coding protein_coding MGP_CASTEiJ_T0028944.1 MGP_CASTEiJ_G0017742.1 mouse_genomes_project 11 60738075 60760431 + MGP_CASTEiJ_P0028944 Tnfrsf13b protein_coding protein_coding MGP_CASTEiJ_T0028945.1 MGP_CASTEiJ_G0017742.1 mouse_genomes_project 11 60738106 60760474 + MGP_CASTEiJ_P0028945 Tnfrsf13b protein_coding protein_coding MGP_CASTEiJ_T0028946.1 MGP_CASTEiJ_G0017742.1 mouse_genomes_project 11 60754268 60761196 + MGP_CASTEiJ_P0028946 Tnfrsf13b protein_coding protein_coding MGP_CASTEiJ_T0028947.1 MGP_CASTEiJ_G0017742.1 mouse_genomes_project 11 60756001 60761487 + Tnfrsf13b protein_coding processed_transcript MGP_CASTEiJ_T0028948.1 MGP_CASTEiJ_G0017742.1 mouse_genomes_project 11 60756039 60761360 + Tnfrsf13b protein_coding processed_transcript MGP_CASTEiJ_T0028949.1 MGP_CASTEiJ_G0017742.1 mouse_genomes_project 11 60756205 60761313 + Tnfrsf13b protein_coding processed_transcript MGP_CASTEiJ_T0012377.1 MGP_CASTEiJ_G0010540.1 mouse_genomes_project 11 102368017 102368185 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033419.1 MGP_CASTEiJ_G0018761.1 mouse_genomes_project 11 122001414 122007912 - MGP_CASTEiJ_P0033419 Tha1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033420.1 MGP_CASTEiJ_G0018761.1 mouse_genomes_project 11 122002033 122008055 - MGP_CASTEiJ_P0033420 Tha1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033421.1 MGP_CASTEiJ_G0018761.1 mouse_genomes_project 11 122002045 122008137 - Tha1 protein_coding processed_transcript MGP_CASTEiJ_T0033422.1 MGP_CASTEiJ_G0018761.1 mouse_genomes_project 11 122002045 122008115 - MGP_CASTEiJ_P0033422 Tha1 protein_coding protein_coding MGP_CASTEiJ_T0033423.1 MGP_CASTEiJ_G0018761.1 mouse_genomes_project 11 122003826 122006578 - Tha1 protein_coding processed_transcript MGP_CASTEiJ_T0003069.1 MGP_CASTEiJ_G0002860.1 mouse_genomes_project 11 58330870 58332709 + Gm12256 antisense antisense MGP_CASTEiJ_T0027745.1 MGP_CASTEiJ_G0017424.1 mouse_genomes_project 11 27353624 27360662 + MGP_CASTEiJ_P0027745 protein_coding protein_coding MGP_CASTEiJ_T0027746.1 MGP_CASTEiJ_G0017424.1 mouse_genomes_project 11 27353646 27373275 + MGP_CASTEiJ_P0027746 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027747.1 MGP_CASTEiJ_G0017424.1 mouse_genomes_project 11 27353652 27361181 + MGP_CASTEiJ_P0027747 protein_coding protein_coding MGP_CASTEiJ_T0027748.1 MGP_CASTEiJ_G0017424.1 mouse_genomes_project 11 27353663 27357479 + protein_coding processed_transcript MGP_CASTEiJ_T0027749.1 MGP_CASTEiJ_G0017424.1 mouse_genomes_project 11 27353666 27368318 + MGP_CASTEiJ_P0027749 protein_coding protein_coding MGP_CASTEiJ_T0027750.1 MGP_CASTEiJ_G0017424.1 mouse_genomes_project 11 27360554 27368425 + MGP_CASTEiJ_P0027750 protein_coding protein_coding MGP_CASTEiJ_T0027751.1 MGP_CASTEiJ_G0017424.1 mouse_genomes_project 11 27368123 27370187 + protein_coding processed_transcript MGP_CASTEiJ_T0030542.1 MGP_CASTEiJ_G0018100.1 mouse_genomes_project 11 79729556 79770158 + MGP_CASTEiJ_P0030542 Nos2 protein_coding protein_coding MGP_CASTEiJ_T0030543.1 MGP_CASTEiJ_G0018100.1 mouse_genomes_project 11 79733946 79769655 + MGP_CASTEiJ_P0030543 Nos2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030544.1 MGP_CASTEiJ_G0018100.1 mouse_genomes_project 11 79733948 79769711 + MGP_CASTEiJ_P0030544 Nos2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030545.1 MGP_CASTEiJ_G0018100.1 mouse_genomes_project 11 79733954 79769711 + MGP_CASTEiJ_P0030545 Nos2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029336.1 MGP_CASTEiJ_G0017823.1 mouse_genomes_project 11 69089761 69095770 + MGP_CASTEiJ_P0029336 Aurkb protein_coding protein_coding MGP_CASTEiJ_T0029337.1 MGP_CASTEiJ_G0017823.1 mouse_genomes_project 11 69089766 69095770 + MGP_CASTEiJ_P0029337 Aurkb protein_coding protein_coding MGP_CASTEiJ_T0029338.1 MGP_CASTEiJ_G0017823.1 mouse_genomes_project 11 69089785 69092326 + Aurkb protein_coding processed_transcript MGP_CASTEiJ_T0029339.1 MGP_CASTEiJ_G0017823.1 mouse_genomes_project 11 69089804 69092404 + Aurkb protein_coding retained_intron MGP_CASTEiJ_T0029340.1 MGP_CASTEiJ_G0017823.1 mouse_genomes_project 11 69089835 69094668 + MGP_CASTEiJ_P0029340 Aurkb protein_coding unknown_likely_coding MGP_CASTEiJ_T0029341.1 MGP_CASTEiJ_G0017823.1 mouse_genomes_project 11 69092084 69093181 + Aurkb protein_coding retained_intron MGP_CASTEiJ_T0029342.1 MGP_CASTEiJ_G0017823.1 mouse_genomes_project 11 69092635 69093183 + Aurkb protein_coding retained_intron MGP_CASTEiJ_T0029343.1 MGP_CASTEiJ_G0017823.1 mouse_genomes_project 11 69092676 69094843 + Aurkb protein_coding retained_intron MGP_CASTEiJ_T0029344.1 MGP_CASTEiJ_G0017823.1 mouse_genomes_project 11 69094668 69095246 + Aurkb protein_coding processed_transcript MGP_CASTEiJ_T0027483.1 MGP_CASTEiJ_G0017368.1 mouse_genomes_project 11 14057044 14196595 + MGP_CASTEiJ_P0027483 Egfr protein_coding protein_coding MGP_CASTEiJ_T0027484.1 MGP_CASTEiJ_G0017368.1 mouse_genomes_project 11 14057052 14229410 + MGP_CASTEiJ_P0027484 Egfr protein_coding protein_coding MGP_CASTEiJ_T0027485.1 MGP_CASTEiJ_G0017368.1 mouse_genomes_project 11 14057071 14099627 + Egfr protein_coding processed_transcript MGP_CASTEiJ_T0027486.1 MGP_CASTEiJ_G0017368.1 mouse_genomes_project 11 14187712 14193029 + MGP_CASTEiJ_P0027486 Egfr protein_coding protein_coding MGP_CASTEiJ_T0027487.1 MGP_CASTEiJ_G0017368.1 mouse_genomes_project 11 14215000 14220647 + Egfr protein_coding processed_transcript MGP_CASTEiJ_T0029374.1 MGP_CASTEiJ_G0017832.1 mouse_genomes_project 11 69238461 69252639 - MGP_CASTEiJ_P0029374 Alox8 protein_coding protein_coding MGP_CASTEiJ_T0029375.1 MGP_CASTEiJ_G0017832.1 mouse_genomes_project 11 69239585 69252605 - MGP_CASTEiJ_P0029375 Alox8 protein_coding protein_coding MGP_CASTEiJ_T0029376.1 MGP_CASTEiJ_G0017832.1 mouse_genomes_project 11 69244397 69252607 - Alox8 protein_coding retained_intron MGP_CASTEiJ_T0029377.1 MGP_CASTEiJ_G0017832.1 mouse_genomes_project 11 69246291 69252180 - Alox8 protein_coding retained_intron MGP_CASTEiJ_T0030939.1 MGP_CASTEiJ_G0018200.1 mouse_genomes_project 11 87967749 87990390 + MGP_CASTEiJ_P0030939 Tubd1 protein_coding protein_coding MGP_CASTEiJ_T0030940.1 MGP_CASTEiJ_G0018200.1 mouse_genomes_project 11 87967749 87990390 + MGP_CASTEiJ_P0030940 Tubd1 protein_coding protein_coding MGP_CASTEiJ_T0030941.1 MGP_CASTEiJ_G0018200.1 mouse_genomes_project 11 87967749 87990390 + MGP_CASTEiJ_P0030941 Tubd1 protein_coding protein_coding MGP_CASTEiJ_T0030942.1 MGP_CASTEiJ_G0018200.1 mouse_genomes_project 11 87967749 87990389 + MGP_CASTEiJ_P0030942 Tubd1 protein_coding protein_coding MGP_CASTEiJ_T0030943.1 MGP_CASTEiJ_G0018200.1 mouse_genomes_project 11 87978356 87990390 + MGP_CASTEiJ_P0030943 Tubd1 protein_coding protein_coding MGP_CASTEiJ_T0028191.1 MGP_CASTEiJ_G0017547.1 mouse_genomes_project 11 48318008 48347074 + Flt4 protein_coding processed_transcript MGP_CASTEiJ_T0028192.1 MGP_CASTEiJ_G0017547.1 mouse_genomes_project 11 48318008 48375429 + MGP_CASTEiJ_P0028192 Flt4 protein_coding protein_coding MGP_CASTEiJ_T0012393.1 MGP_CASTEiJ_G0010556.1 mouse_genomes_project 11 107965729 107966319 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098741.1 MGP_CASTEiJ_G0035672.1 mouse_genomes_project 11 121150573 121150766 + Gm26083 scaRNA scaRNA MGP_CASTEiJ_T0009434.1 MGP_CASTEiJ_G0007622.1 mouse_genomes_project 11 53806745 53806822 - Gm26116 miRNA miRNA MGP_CASTEiJ_T0032292.1 MGP_CASTEiJ_G0018539.1 mouse_genomes_project 11 105247431 105251938 - MGP_CASTEiJ_P0032292 Slc25a39 protein_coding protein_coding MGP_CASTEiJ_T0032293.1 MGP_CASTEiJ_G0018539.1 mouse_genomes_project 11 105247431 105251993 - MGP_CASTEiJ_P0032293 Slc25a39 protein_coding protein_coding MGP_CASTEiJ_T0032294.1 MGP_CASTEiJ_G0018539.1 mouse_genomes_project 11 105247488 105248941 - MGP_CASTEiJ_P0032294 Slc25a39 protein_coding protein_coding MGP_CASTEiJ_T0032295.1 MGP_CASTEiJ_G0018539.1 mouse_genomes_project 11 105247591 105251955 - Slc25a39 protein_coding retained_intron MGP_CASTEiJ_T0032296.1 MGP_CASTEiJ_G0018539.1 mouse_genomes_project 11 105248238 105251957 - MGP_CASTEiJ_P0032296 Slc25a39 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032297.1 MGP_CASTEiJ_G0018539.1 mouse_genomes_project 11 105248465 105251905 - Slc25a39 protein_coding retained_intron MGP_CASTEiJ_T0032298.1 MGP_CASTEiJ_G0018539.1 mouse_genomes_project 11 105248479 105251264 - MGP_CASTEiJ_P0032298 Slc25a39 protein_coding protein_coding MGP_CASTEiJ_T0032299.1 MGP_CASTEiJ_G0018539.1 mouse_genomes_project 11 105248509 105251936 - MGP_CASTEiJ_P0032299 Slc25a39 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032300.1 MGP_CASTEiJ_G0018539.1 mouse_genomes_project 11 105248836 105251912 - Slc25a39 protein_coding retained_intron MGP_CASTEiJ_T0032301.1 MGP_CASTEiJ_G0018539.1 mouse_genomes_project 11 105248931 105251764 - MGP_CASTEiJ_P0032301 Slc25a39 protein_coding protein_coding MGP_CASTEiJ_T0032302.1 MGP_CASTEiJ_G0018539.1 mouse_genomes_project 11 105249056 105251403 - MGP_CASTEiJ_P0032302 Slc25a39 protein_coding protein_coding MGP_CASTEiJ_T0032303.1 MGP_CASTEiJ_G0018539.1 mouse_genomes_project 11 105249234 105251832 - MGP_CASTEiJ_P0032303 Slc25a39 protein_coding protein_coding MGP_CASTEiJ_T0032304.1 MGP_CASTEiJ_G0018539.1 mouse_genomes_project 11 105249301 105252394 - MGP_CASTEiJ_P0032304 Slc25a39 protein_coding protein_coding MGP_CASTEiJ_T0032305.1 MGP_CASTEiJ_G0018539.1 mouse_genomes_project 11 105249470 105251256 - Slc25a39 protein_coding processed_transcript MGP_CASTEiJ_T0032306.1 MGP_CASTEiJ_G0018539.1 mouse_genomes_project 11 105250184 105251332 - Slc25a39 protein_coding retained_intron MGP_CASTEiJ_T0009449.1 MGP_CASTEiJ_G0007637.1 mouse_genomes_project 11 69726515 69726618 - Mir467f miRNA miRNA MGP_CASTEiJ_T0027904.1 MGP_CASTEiJ_G0017463.1 mouse_genomes_project 11 31324946 31325926 - Gm12117 protein_coding translated_processed_pseudogene MGP_CASTEiJ_T0027905.1 MGP_CASTEiJ_G0017463.1 mouse_genomes_project 11 31325067 31325523 - MGP_CASTEiJ_P0027905 Gm12117 protein_coding protein_coding MGP_CASTEiJ_T0006206.1 MGP_CASTEiJ_G0005184.1 mouse_genomes_project 11 121150120 121152290 + Snhg20 lincRNA lincRNA MGP_CASTEiJ_T0006207.1 MGP_CASTEiJ_G0005184.1 mouse_genomes_project 11 121150120 121150788 + Snhg20 lincRNA lincRNA MGP_CASTEiJ_T0006208.1 MGP_CASTEiJ_G0005184.1 mouse_genomes_project 11 121150132 121152289 + Snhg20 lincRNA lincRNA MGP_CASTEiJ_T0028594.1 MGP_CASTEiJ_G0017641.1 mouse_genomes_project 11 54272214 54287836 + MGP_CASTEiJ_P0028594 Gm2a protein_coding protein_coding MGP_CASTEiJ_T0006058.1 MGP_CASTEiJ_G0005072.1 mouse_genomes_project 11 38809794 38810794 - 3110004A20Rik lincRNA lincRNA MGP_CASTEiJ_T0006217.1 MGP_CASTEiJ_G0005193.1 mouse_genomes_project 11 124214762 124218338 + Gm11766 lincRNA lincRNA MGP_CASTEiJ_T0012202.1 MGP_CASTEiJ_G0010365.1 mouse_genomes_project 11 28466086 28479284 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003172.1 MGP_CASTEiJ_G0002941.1 mouse_genomes_project 11 99843286 99852752 + antisense antisense MGP_CASTEiJ_T0009501.1 MGP_CASTEiJ_G0007689.1 mouse_genomes_project 11 103739559 103739629 + Mir6928 miRNA miRNA MGP_CASTEiJ_T0099237.1 MGP_CASTEiJ_G0036150.1 mouse_genomes_project 11 60304054 60304151 + Gm23341 snRNA snRNA MGP_CASTEiJ_T0012230.1 MGP_CASTEiJ_G0010393.1 mouse_genomes_project 11 44370482 44370875 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031185.1 MGP_CASTEiJ_G0018258.1 mouse_genomes_project 11 95819307 95830801 - MGP_CASTEiJ_P0031185 Nme1 protein_coding protein_coding MGP_CASTEiJ_T0031186.1 MGP_CASTEiJ_G0018258.1 mouse_genomes_project 11 95821805 95828336 - MGP_CASTEiJ_P0031186 Nme1 protein_coding protein_coding MGP_CASTEiJ_T0031187.1 MGP_CASTEiJ_G0018258.1 mouse_genomes_project 11 95823012 95830503 - MGP_CASTEiJ_P0031187 Nme1 protein_coding protein_coding MGP_CASTEiJ_T0028679.1 MGP_CASTEiJ_G0017667.1 mouse_genomes_project 11 57686361 57707822 + MGP_CASTEiJ_P0028679 Sh3bp5l protein_coding protein_coding MGP_CASTEiJ_T0028680.1 MGP_CASTEiJ_G0017667.1 mouse_genomes_project 11 57686387 57707819 + MGP_CASTEiJ_P0028680 Sh3bp5l protein_coding protein_coding MGP_CASTEiJ_T0028681.1 MGP_CASTEiJ_G0017667.1 mouse_genomes_project 11 57686680 57687147 + Sh3bp5l protein_coding processed_transcript MGP_CASTEiJ_T0028682.1 MGP_CASTEiJ_G0017667.1 mouse_genomes_project 11 57686912 57707814 + Sh3bp5l protein_coding processed_transcript MGP_CASTEiJ_T0028683.1 MGP_CASTEiJ_G0017667.1 mouse_genomes_project 11 57705404 57707044 + Sh3bp5l protein_coding processed_transcript MGP_CASTEiJ_T0031843.1 MGP_CASTEiJ_G0018449.1 mouse_genomes_project 11 102823542 102830127 - MGP_CASTEiJ_P0031843 Krt9 protein_coding protein_coding MGP_CASTEiJ_T0099245.1 MGP_CASTEiJ_G0036158.1 mouse_genomes_project 11 72371550 72371653 + Gm23226 snRNA snRNA MGP_CASTEiJ_T0100415.1 MGP_CASTEiJ_G0037328.1 mouse_genomes_project 11 3653295 3653431 - Snora5c snoRNA snoRNA MGP_CASTEiJ_T0012226.1 MGP_CASTEiJ_G0010389.1 mouse_genomes_project 11 42055177 42056432 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032885.1 MGP_CASTEiJ_G0018660.1 mouse_genomes_project 11 117487503 117795762 - MGP_CASTEiJ_P0032885 Sdk2 protein_coding protein_coding MGP_CASTEiJ_T0032886.1 MGP_CASTEiJ_G0018660.1 mouse_genomes_project 11 117507570 117525073 - Sdk2 protein_coding processed_transcript MGP_CASTEiJ_T0032887.1 MGP_CASTEiJ_G0018660.1 mouse_genomes_project 11 117520948 117541084 - Sdk2 protein_coding processed_transcript MGP_CASTEiJ_T0032888.1 MGP_CASTEiJ_G0018660.1 mouse_genomes_project 11 117566665 117795519 - MGP_CASTEiJ_P0032888 Sdk2 protein_coding protein_coding MGP_CASTEiJ_T0032889.1 MGP_CASTEiJ_G0018660.1 mouse_genomes_project 11 117583758 117796590 - Sdk2 protein_coding processed_transcript MGP_CASTEiJ_T0032890.1 MGP_CASTEiJ_G0018660.1 mouse_genomes_project 11 117657036 117796573 - Sdk2 protein_coding processed_transcript MGP_CASTEiJ_T0100411.1 MGP_CASTEiJ_G0037324.1 mouse_genomes_project 11 2497126 2497256 - Gm22471 snoRNA snoRNA MGP_CASTEiJ_T0028067.1 MGP_CASTEiJ_G0017505.1 mouse_genomes_project 11 44544192 44584101 + MGP_CASTEiJ_P0028067 Sox30 protein_coding protein_coding MGP_CASTEiJ_T0028068.1 MGP_CASTEiJ_G0017505.1 mouse_genomes_project 11 44544327 44583509 + MGP_CASTEiJ_P0028068 Sox30 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012300.1 MGP_CASTEiJ_G0010463.1 mouse_genomes_project 11 70593164 70593585 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033111.1 MGP_CASTEiJ_G0018706.1 mouse_genomes_project 11 119759256 119795418 + MGP_CASTEiJ_P0033111 Llgl2 protein_coding protein_coding MGP_CASTEiJ_T0033112.1 MGP_CASTEiJ_G0018706.1 mouse_genomes_project 11 119759265 119780679 + MGP_CASTEiJ_P0033112 Llgl2 protein_coding protein_coding MGP_CASTEiJ_T0033113.1 MGP_CASTEiJ_G0018706.1 mouse_genomes_project 11 119759265 119795416 + MGP_CASTEiJ_P0033113 Llgl2 protein_coding protein_coding MGP_CASTEiJ_T0033114.1 MGP_CASTEiJ_G0018706.1 mouse_genomes_project 11 119759359 119795416 + MGP_CASTEiJ_P0033114 Llgl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033115.1 MGP_CASTEiJ_G0018706.1 mouse_genomes_project 11 119767271 119780121 + MGP_CASTEiJ_P0033115 Llgl2 protein_coding protein_coding MGP_CASTEiJ_T0033116.1 MGP_CASTEiJ_G0018706.1 mouse_genomes_project 11 119769224 119780626 + MGP_CASTEiJ_P0033116 Llgl2 protein_coding protein_coding MGP_CASTEiJ_T0033117.1 MGP_CASTEiJ_G0018706.1 mouse_genomes_project 11 119769613 119780686 + MGP_CASTEiJ_P0033117 Llgl2 protein_coding protein_coding MGP_CASTEiJ_T0033118.1 MGP_CASTEiJ_G0018706.1 mouse_genomes_project 11 119769622 119780714 + MGP_CASTEiJ_P0033118 Llgl2 protein_coding protein_coding MGP_CASTEiJ_T0033119.1 MGP_CASTEiJ_G0018706.1 mouse_genomes_project 11 119792891 119793959 + Llgl2 protein_coding retained_intron MGP_CASTEiJ_T0033120.1 MGP_CASTEiJ_G0018706.1 mouse_genomes_project 11 119793375 119794498 + Llgl2 protein_coding processed_transcript MGP_CASTEiJ_T0033121.1 MGP_CASTEiJ_G0018706.1 mouse_genomes_project 11 119793442 119795418 + MGP_CASTEiJ_P0033121 Llgl2 protein_coding protein_coding MGP_CASTEiJ_T0033122.1 MGP_CASTEiJ_G0018706.1 mouse_genomes_project 11 119793871 119795222 + Llgl2 protein_coding retained_intron MGP_CASTEiJ_T0033123.1 MGP_CASTEiJ_G0018706.1 mouse_genomes_project 11 119794670 119795418 + Llgl2 protein_coding retained_intron MGP_CASTEiJ_T0006056.1 MGP_CASTEiJ_G0005070.1 mouse_genomes_project 11 36680902 36709242 - Gm12130 lincRNA lincRNA MGP_CASTEiJ_T0012179.1 MGP_CASTEiJ_G0010342.1 mouse_genomes_project 11 20322394 20323833 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032591.1 MGP_CASTEiJ_G0018598.1 mouse_genomes_project 11 109252594 109256469 - MGP_CASTEiJ_P0032591 Limd2 protein_coding protein_coding MGP_CASTEiJ_T0032592.1 MGP_CASTEiJ_G0018598.1 mouse_genomes_project 11 109254651 109255747 - Limd2 protein_coding processed_transcript MGP_CASTEiJ_T0032593.1 MGP_CASTEiJ_G0018598.1 mouse_genomes_project 11 109254768 109256265 - MGP_CASTEiJ_P0032593 Limd2 protein_coding protein_coding MGP_CASTEiJ_T0032594.1 MGP_CASTEiJ_G0018598.1 mouse_genomes_project 11 109254988 109257178 - MGP_CASTEiJ_P0032594 Limd2 protein_coding protein_coding MGP_CASTEiJ_T0100444.1 MGP_CASTEiJ_G0037357.1 mouse_genomes_project 11 62320441 62320513 + Snord49a snoRNA snoRNA MGP_CASTEiJ_T0033784.1 MGP_CASTEiJ_G0018826.1 mouse_genomes_project 11 125070698 125077909 + MGP_CASTEiJ_P0033784 Lrrc45 protein_coding protein_coding MGP_CASTEiJ_T0033785.1 MGP_CASTEiJ_G0018826.1 mouse_genomes_project 11 125070724 125077904 + MGP_CASTEiJ_P0033785 Lrrc45 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033786.1 MGP_CASTEiJ_G0018826.1 mouse_genomes_project 11 125070751 125072328 + MGP_CASTEiJ_P0033786 Lrrc45 protein_coding protein_coding MGP_CASTEiJ_T0033787.1 MGP_CASTEiJ_G0018826.1 mouse_genomes_project 11 125074306 125076756 + Lrrc45 protein_coding retained_intron MGP_CASTEiJ_T0033788.1 MGP_CASTEiJ_G0018826.1 mouse_genomes_project 11 125076516 125077693 + Lrrc45 protein_coding retained_intron MGP_CASTEiJ_T0031809.1 MGP_CASTEiJ_G0018422.1 mouse_genomes_project 11 102241222 102241982 - MGP_CASTEiJ_P0031809 Krtap4-6 protein_coding protein_coding MGP_CASTEiJ_T0010968.1 MGP_CASTEiJ_G0009156.1 mouse_genomes_project 11 49295018 49295285 - Gm23824 misc_RNA misc_RNA MGP_CASTEiJ_T0006145.1 MGP_CASTEiJ_G0005139.1 mouse_genomes_project 11 89802576 89806207 + Gm44783 lincRNA lincRNA MGP_CASTEiJ_T0006171.1 MGP_CASTEiJ_G0005157.1 mouse_genomes_project 11 102933116 102935175 + Gm12349 lincRNA lincRNA MGP_CASTEiJ_T0003147.1 MGP_CASTEiJ_G0002922.1 mouse_genomes_project 11 89917156 89926440 + Gm15893 antisense antisense MGP_CASTEiJ_T0028482.1 MGP_CASTEiJ_G0017618.1 mouse_genomes_project 11 52738838 52796861 - MGP_CASTEiJ_P0028482 Rad50 protein_coding protein_coding MGP_CASTEiJ_T0028483.1 MGP_CASTEiJ_G0017618.1 mouse_genomes_project 11 52758198 52796665 - MGP_CASTEiJ_P0028483 Rad50 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028484.1 MGP_CASTEiJ_G0017618.1 mouse_genomes_project 11 52766293 52796861 - MGP_CASTEiJ_P0028484 Rad50 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028485.1 MGP_CASTEiJ_G0017618.1 mouse_genomes_project 11 52769970 52771385 - Rad50 protein_coding processed_transcript MGP_CASTEiJ_T0028486.1 MGP_CASTEiJ_G0017618.1 mouse_genomes_project 11 52775135 52796837 - MGP_CASTEiJ_P0028486 Rad50 protein_coding protein_coding MGP_CASTEiJ_T0028487.1 MGP_CASTEiJ_G0017618.1 mouse_genomes_project 11 52781237 52784268 - Rad50 protein_coding processed_transcript MGP_CASTEiJ_T0012182.1 MGP_CASTEiJ_G0010345.1 mouse_genomes_project 11 21519035 21519294 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030044.1 MGP_CASTEiJ_G0017991.1 mouse_genomes_project 11 74511126 74512129 - MGP_CASTEiJ_P0030044 Olfr399 protein_coding protein_coding MGP_CASTEiJ_T0029682.1 MGP_CASTEiJ_G0017898.1 mouse_genomes_project 11 70387752 70404378 - MGP_CASTEiJ_P0029682 Alox12 protein_coding protein_coding MGP_CASTEiJ_T0029683.1 MGP_CASTEiJ_G0017898.1 mouse_genomes_project 11 70397653 70404366 - MGP_CASTEiJ_P0029683 Alox12 protein_coding protein_coding MGP_CASTEiJ_T0006181.1 MGP_CASTEiJ_G0005165.1 mouse_genomes_project 11 112677549 112685697 + 1700096J18Rik lincRNA lincRNA MGP_CASTEiJ_T0003070.1 MGP_CASTEiJ_G0002861.1 mouse_genomes_project 11 58347529 58349329 + Gm12257 antisense antisense MGP_CASTEiJ_T0009525.1 MGP_CASTEiJ_G0007713.1 mouse_genomes_project 11 124293900 124293987 + Mir3065 miRNA miRNA MGP_CASTEiJ_T0101995.1 MGP_CASTEiJ_G0038720.1 mouse_genomes_project 11 74753145 74754162 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0028151.1 MGP_CASTEiJ_G0017535.1 mouse_genomes_project 11 47878339 47885029 + MGP_CASTEiJ_P0028151 Olfr1395 protein_coding protein_coding MGP_CASTEiJ_T0028152.1 MGP_CASTEiJ_G0017535.1 mouse_genomes_project 11 47884075 47885029 + MGP_CASTEiJ_P0028152 Olfr1395 protein_coding protein_coding MGP_CASTEiJ_T0100436.1 MGP_CASTEiJ_G0037349.1 mouse_genomes_project 11 47521214 47521282 + Snord95 snoRNA snoRNA MGP_CASTEiJ_T0028535.1 MGP_CASTEiJ_G0017629.1 mouse_genomes_project 11 53406858 53408840 - MGP_CASTEiJ_P0028535 Il3 protein_coding protein_coding MGP_CASTEiJ_T0029119.1 MGP_CASTEiJ_G0017771.1 mouse_genomes_project 11 62486955 62526310 - Zfp286 protein_coding processed_transcript MGP_CASTEiJ_T0029120.1 MGP_CASTEiJ_G0017771.1 mouse_genomes_project 11 62515725 62526897 - MGP_CASTEiJ_P0029120 Zfp286 protein_coding protein_coding MGP_CASTEiJ_T0029121.1 MGP_CASTEiJ_G0017771.1 mouse_genomes_project 11 62518071 62526747 - Zfp286 protein_coding processed_transcript MGP_CASTEiJ_T0029122.1 MGP_CASTEiJ_G0017771.1 mouse_genomes_project 11 62518080 62521500 - Zfp286 protein_coding processed_transcript MGP_CASTEiJ_T0029123.1 MGP_CASTEiJ_G0017771.1 mouse_genomes_project 11 62520874 62526739 - Zfp286 protein_coding processed_transcript MGP_CASTEiJ_T0029124.1 MGP_CASTEiJ_G0017771.1 mouse_genomes_project 11 62520874 62526716 - Zfp286 protein_coding processed_transcript MGP_CASTEiJ_T0029125.1 MGP_CASTEiJ_G0017771.1 mouse_genomes_project 11 62524913 62526753 - Zfp286 protein_coding processed_transcript MGP_CASTEiJ_T0033026.1 MGP_CASTEiJ_G0018693.1 mouse_genomes_project 11 119358463 119374485 + MGP_CASTEiJ_P0033026 Armc7 protein_coding protein_coding MGP_CASTEiJ_T0033027.1 MGP_CASTEiJ_G0018693.1 mouse_genomes_project 11 119358494 119367881 + Armc7 protein_coding processed_transcript MGP_CASTEiJ_T0033028.1 MGP_CASTEiJ_G0018693.1 mouse_genomes_project 11 119358538 119369390 + Armc7 protein_coding processed_transcript MGP_CASTEiJ_T0033029.1 MGP_CASTEiJ_G0018693.1 mouse_genomes_project 11 119358750 119373080 + Armc7 protein_coding processed_transcript MGP_CASTEiJ_T0030358.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78458389 78575507 + MGP_CASTEiJ_P0030358 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030359.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78458428 78574461 + MGP_CASTEiJ_P0030359 Myo18a protein_coding unknown_likely_coding MGP_CASTEiJ_T0030360.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78458428 78528557 + MGP_CASTEiJ_P0030360 Myo18a protein_coding unknown_likely_coding MGP_CASTEiJ_T0030361.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78458444 78477006 + Myo18a protein_coding retained_intron MGP_CASTEiJ_T0030362.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78460747 78472534 + MGP_CASTEiJ_P0030362 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030363.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78461889 78575507 + MGP_CASTEiJ_P0030363 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030364.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78467287 78575507 + MGP_CASTEiJ_P0030364 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030365.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78472392 78575507 + MGP_CASTEiJ_P0030365 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030366.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78472392 78575507 + MGP_CASTEiJ_P0030366 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030367.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78472420 78574670 + MGP_CASTEiJ_P0030367 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030368.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78472420 78574669 + MGP_CASTEiJ_P0030368 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030369.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78472443 78574375 + MGP_CASTEiJ_P0030369 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030371.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78505446 78575364 + MGP_CASTEiJ_P0030371 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030372.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78505485 78518310 + MGP_CASTEiJ_P0030372 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030373.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78505498 78575507 + MGP_CASTEiJ_P0030373 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030374.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78505498 78574636 + MGP_CASTEiJ_P0030374 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030375.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78505523 78574364 + MGP_CASTEiJ_P0030375 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030376.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78505523 78574583 + MGP_CASTEiJ_P0030376 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030377.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78517255 78575507 + MGP_CASTEiJ_P0030377 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030378.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78530097 78533192 + Myo18a protein_coding processed_transcript MGP_CASTEiJ_T0030379.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78545026 78548519 + Myo18a protein_coding processed_transcript MGP_CASTEiJ_T0030380.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78547876 78551838 + Myo18a protein_coding retained_intron MGP_CASTEiJ_T0030381.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78556425 78563037 + Myo18a protein_coding retained_intron MGP_CASTEiJ_T0030382.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78559311 78562908 + Myo18a protein_coding retained_intron MGP_CASTEiJ_T0030383.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78563446 78568913 + MGP_CASTEiJ_P0030383 Myo18a protein_coding protein_coding MGP_CASTEiJ_T0030384.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78567029 78574603 + Myo18a protein_coding retained_intron MGP_CASTEiJ_T0030385.1 MGP_CASTEiJ_G0018062.1 mouse_genomes_project 11 78569831 78574722 + Myo18a protein_coding processed_transcript MGP_CASTEiJ_T0027555.1 MGP_CASTEiJ_G0017387.1 mouse_genomes_project 11 18684338 18776204 + MGP_CASTEiJ_P0027555 Vps54 protein_coding protein_coding MGP_CASTEiJ_T0027556.1 MGP_CASTEiJ_G0017387.1 mouse_genomes_project 11 18684338 18776190 + MGP_CASTEiJ_P0027556 Vps54 protein_coding protein_coding MGP_CASTEiJ_T0027557.1 MGP_CASTEiJ_G0017387.1 mouse_genomes_project 11 18714595 18775395 + MGP_CASTEiJ_P0027557 Vps54 protein_coding protein_coding MGP_CASTEiJ_T0027558.1 MGP_CASTEiJ_G0017387.1 mouse_genomes_project 11 18725212 18739309 + Vps54 protein_coding processed_transcript MGP_CASTEiJ_T0027559.1 MGP_CASTEiJ_G0017387.1 mouse_genomes_project 11 18754898 18762527 + Vps54 protein_coding processed_transcript MGP_CASTEiJ_T0027560.1 MGP_CASTEiJ_G0017387.1 mouse_genomes_project 11 18767634 18770128 + Vps54 protein_coding processed_transcript MGP_CASTEiJ_T0027561.1 MGP_CASTEiJ_G0017387.1 mouse_genomes_project 11 18769214 18775607 + Vps54 protein_coding processed_transcript MGP_CASTEiJ_T0027349.1 MGP_CASTEiJ_G0017341.1 mouse_genomes_project 11 3537213 3551819 - MGP_CASTEiJ_P0027349 Myo1g protein_coding protein_coding MGP_CASTEiJ_T0027350.1 MGP_CASTEiJ_G0017341.1 mouse_genomes_project 11 3537339 3551758 - MGP_CASTEiJ_P0027350 Myo1g protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027351.1 MGP_CASTEiJ_G0017341.1 mouse_genomes_project 11 3538539 3539355 - Myo1g protein_coding retained_intron MGP_CASTEiJ_T0027352.1 MGP_CASTEiJ_G0017341.1 mouse_genomes_project 11 3543655 3551819 - Myo1g protein_coding retained_intron MGP_CASTEiJ_T0027353.1 MGP_CASTEiJ_G0017341.1 mouse_genomes_project 11 3545406 3546404 - Myo1g protein_coding retained_intron MGP_CASTEiJ_T0027354.1 MGP_CASTEiJ_G0017341.1 mouse_genomes_project 11 3548871 3551826 - MGP_CASTEiJ_P0027354 Myo1g protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027355.1 MGP_CASTEiJ_G0017341.1 mouse_genomes_project 11 3549917 3550375 - MGP_CASTEiJ_P0027355 Myo1g protein_coding protein_coding MGP_CASTEiJ_T0009420.1 MGP_CASTEiJ_G0007608.1 mouse_genomes_project 11 33843293 33843379 + Mir103-1 miRNA miRNA MGP_CASTEiJ_T0033698.1 MGP_CASTEiJ_G0018811.1 mouse_genomes_project 11 124873714 124883520 - Fam195b protein_coding processed_transcript MGP_CASTEiJ_T0033699.1 MGP_CASTEiJ_G0018811.1 mouse_genomes_project 11 124873714 124883546 - MGP_CASTEiJ_P0033699 Fam195b protein_coding protein_coding MGP_CASTEiJ_T0030668.1 MGP_CASTEiJ_G0018129.1 mouse_genomes_project 11 83065647 83075946 - MGP_CASTEiJ_P0030668 Gm17268 protein_coding protein_coding MGP_CASTEiJ_T0029515.1 MGP_CASTEiJ_G0017866.1 mouse_genomes_project 11 69932346 69933651 - MGP_CASTEiJ_P0029515 Spem1 protein_coding protein_coding MGP_CASTEiJ_T0100414.1 MGP_CASTEiJ_G0037327.1 mouse_genomes_project 11 3652784 3652917 - Gm24313 snoRNA snoRNA MGP_CASTEiJ_T0012188.1 MGP_CASTEiJ_G0010351.1 mouse_genomes_project 11 24750462 24750681 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027600.1 MGP_CASTEiJ_G0017397.1 mouse_genomes_project 11 20460010 20548193 - MGP_CASTEiJ_P0027600 protein_coding protein_coding MGP_CASTEiJ_T0027601.1 MGP_CASTEiJ_G0017397.1 mouse_genomes_project 11 20463633 20548063 - MGP_CASTEiJ_P0027601 protein_coding protein_coding MGP_CASTEiJ_T0027602.1 MGP_CASTEiJ_G0017397.1 mouse_genomes_project 11 20463638 20544806 - MGP_CASTEiJ_P0027602 protein_coding protein_coding MGP_CASTEiJ_T0027603.1 MGP_CASTEiJ_G0017397.1 mouse_genomes_project 11 20463709 20521898 - protein_coding retained_intron MGP_CASTEiJ_T0027604.1 MGP_CASTEiJ_G0017397.1 mouse_genomes_project 11 20463897 20538643 - protein_coding processed_transcript MGP_CASTEiJ_T0027605.1 MGP_CASTEiJ_G0017397.1 mouse_genomes_project 11 20521102 20547995 - MGP_CASTEiJ_P0027605 protein_coding protein_coding MGP_CASTEiJ_T0031105.1 MGP_CASTEiJ_G0018238.1 mouse_genomes_project 11 90586659 90614309 + MGP_CASTEiJ_P0031105 Coil protein_coding protein_coding MGP_CASTEiJ_T0031106.1 MGP_CASTEiJ_G0018238.1 mouse_genomes_project 11 90587140 90614315 + MGP_CASTEiJ_P0031106 Coil protein_coding unknown_likely_coding MGP_CASTEiJ_T0031107.1 MGP_CASTEiJ_G0018238.1 mouse_genomes_project 11 90587162 90614309 + MGP_CASTEiJ_P0031107 Coil protein_coding protein_coding MGP_CASTEiJ_T0031108.1 MGP_CASTEiJ_G0018238.1 mouse_genomes_project 11 90610109 90613650 + Coil protein_coding retained_intron MGP_CASTEiJ_T0027237.1 MGP_CASTEiJ_G0017314.1 mouse_genomes_project 11 2025034 2050593 - MGP_CASTEiJ_P0027237 Emid1 protein_coding protein_coding MGP_CASTEiJ_T0027238.1 MGP_CASTEiJ_G0017314.1 mouse_genomes_project 11 2025034 2072288 - MGP_CASTEiJ_P0027238 Emid1 protein_coding protein_coding MGP_CASTEiJ_T0027239.1 MGP_CASTEiJ_G0017314.1 mouse_genomes_project 11 2025035 2072271 - MGP_CASTEiJ_P0027239 Emid1 protein_coding protein_coding MGP_CASTEiJ_T0027240.1 MGP_CASTEiJ_G0017314.1 mouse_genomes_project 11 2025040 2049296 - MGP_CASTEiJ_P0027240 Emid1 protein_coding protein_coding MGP_CASTEiJ_T0027241.1 MGP_CASTEiJ_G0017314.1 mouse_genomes_project 11 2025414 2049058 - Emid1 protein_coding retained_intron MGP_CASTEiJ_T0027242.1 MGP_CASTEiJ_G0017314.1 mouse_genomes_project 11 2025642 2072289 - MGP_CASTEiJ_P0027242 Emid1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027243.1 MGP_CASTEiJ_G0017314.1 mouse_genomes_project 11 2025676 2048879 - MGP_CASTEiJ_P0027243 Emid1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027244.1 MGP_CASTEiJ_G0017314.1 mouse_genomes_project 11 2051792 2072268 - MGP_CASTEiJ_P0027244 Emid1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027245.1 MGP_CASTEiJ_G0017314.1 mouse_genomes_project 11 2055218 2070314 - Emid1 protein_coding processed_transcript MGP_CASTEiJ_T0030445.1 MGP_CASTEiJ_G0018075.1 mouse_genomes_project 11 78930736 78934630 + MGP_CASTEiJ_P0030445 Rab34 protein_coding protein_coding MGP_CASTEiJ_T0030446.1 MGP_CASTEiJ_G0018075.1 mouse_genomes_project 11 78930788 78934944 + MGP_CASTEiJ_P0030446 Rab34 protein_coding protein_coding MGP_CASTEiJ_T0030447.1 MGP_CASTEiJ_G0018075.1 mouse_genomes_project 11 78931175 78934977 + MGP_CASTEiJ_P0030447 Rab34 protein_coding protein_coding MGP_CASTEiJ_T0030448.1 MGP_CASTEiJ_G0018075.1 mouse_genomes_project 11 78931535 78932607 + Rab34 protein_coding retained_intron MGP_CASTEiJ_T0030449.1 MGP_CASTEiJ_G0018075.1 mouse_genomes_project 11 78931883 78933905 + Rab34 protein_coding retained_intron MGP_CASTEiJ_T0003239.1 MGP_CASTEiJ_G0002994.1 mouse_genomes_project 11 121168807 121170697 - Gm11730 antisense antisense MGP_CASTEiJ_T0010982.1 MGP_CASTEiJ_G0009170.1 mouse_genomes_project 11 98357932 98358068 - Gm27605 misc_RNA misc_RNA MGP_CASTEiJ_T0032744.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111705027 112139169 + MGP_CASTEiJ_P0032744 Cep112 protein_coding protein_coding MGP_CASTEiJ_T0032745.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111705101 112139168 + MGP_CASTEiJ_P0032745 Cep112 protein_coding protein_coding MGP_CASTEiJ_T0032746.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111705112 111752799 + Cep112 protein_coding retained_intron MGP_CASTEiJ_T0032747.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111705126 111720093 + MGP_CASTEiJ_P0032747 Cep112 protein_coding protein_coding MGP_CASTEiJ_T0032748.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111705300 111820686 + MGP_CASTEiJ_P0032748 Cep112 protein_coding protein_coding MGP_CASTEiJ_T0032749.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111705343 112139169 + MGP_CASTEiJ_P0032749 Cep112 protein_coding protein_coding MGP_CASTEiJ_T0032750.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111705451 112138813 + MGP_CASTEiJ_P0032750 Cep112 protein_coding protein_coding MGP_CASTEiJ_T0032751.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111780982 112138904 + MGP_CASTEiJ_P0032751 Cep112 protein_coding protein_coding MGP_CASTEiJ_T0032752.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111820676 111855478 + Cep112 protein_coding retained_intron MGP_CASTEiJ_T0032753.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111867913 112039551 + MGP_CASTEiJ_P0032753 Cep112 protein_coding protein_coding MGP_CASTEiJ_T0032754.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111885860 111944333 + Cep112 protein_coding processed_transcript MGP_CASTEiJ_T0032755.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111921902 112138807 + Cep112 protein_coding processed_transcript MGP_CASTEiJ_T0032756.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111925813 112134438 + Cep112 protein_coding processed_transcript MGP_CASTEiJ_T0032757.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111963442 112138903 + MGP_CASTEiJ_P0032757 Cep112 protein_coding protein_coding MGP_CASTEiJ_T0032758.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111963449 112139169 + MGP_CASTEiJ_P0032758 Cep112 protein_coding protein_coding MGP_CASTEiJ_T0032759.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111963458 112138908 + MGP_CASTEiJ_P0032759 Cep112 protein_coding protein_coding MGP_CASTEiJ_T0032761.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 111989490 112087934 + Cep112 protein_coding processed_transcript MGP_CASTEiJ_T0032762.1 MGP_CASTEiJ_G0018631.1 mouse_genomes_project 11 112034031 112137916 + MGP_CASTEiJ_P0032762 Cep112 protein_coding protein_coding MGP_CASTEiJ_T0012189.1 MGP_CASTEiJ_G0010352.1 mouse_genomes_project 11 25112039 25112436 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030809.1 MGP_CASTEiJ_G0018174.1 mouse_genomes_project 11 85309448 85331694 - MGP_CASTEiJ_P0030809 Dusp14 protein_coding protein_coding MGP_CASTEiJ_T0030810.1 MGP_CASTEiJ_G0018174.1 mouse_genomes_project 11 85309448 85331250 - MGP_CASTEiJ_P0030810 Dusp14 protein_coding protein_coding MGP_CASTEiJ_T0030811.1 MGP_CASTEiJ_G0018174.1 mouse_genomes_project 11 85309452 85331472 - MGP_CASTEiJ_P0030811 Dusp14 protein_coding protein_coding MGP_CASTEiJ_T0030812.1 MGP_CASTEiJ_G0018174.1 mouse_genomes_project 11 85309821 85329973 - MGP_CASTEiJ_P0030812 Dusp14 protein_coding protein_coding MGP_CASTEiJ_T0030813.1 MGP_CASTEiJ_G0018174.1 mouse_genomes_project 11 85310387 85332154 - MGP_CASTEiJ_P0030813 Dusp14 protein_coding protein_coding MGP_CASTEiJ_T0009473.1 MGP_CASTEiJ_G0007661.1 mouse_genomes_project 11 78920946 78921007 + Mir7653 miRNA miRNA MGP_CASTEiJ_T0006103.1 MGP_CASTEiJ_G0005110.1 mouse_genomes_project 11 70960613 70969089 - Gm12320 lincRNA lincRNA MGP_CASTEiJ_T0030546.1 MGP_CASTEiJ_G0018101.1 mouse_genomes_project 11 79772814 79795127 - MGP_CASTEiJ_P0030546 Lgals9 protein_coding protein_coding MGP_CASTEiJ_T0030547.1 MGP_CASTEiJ_G0018101.1 mouse_genomes_project 11 79772819 79795105 - MGP_CASTEiJ_P0030547 Lgals9 protein_coding protein_coding MGP_CASTEiJ_T0030548.1 MGP_CASTEiJ_G0018101.1 mouse_genomes_project 11 79773235 79795012 - MGP_CASTEiJ_P0030548 Lgals9 protein_coding protein_coding MGP_CASTEiJ_T0030549.1 MGP_CASTEiJ_G0018101.1 mouse_genomes_project 11 79776792 79780272 - Lgals9 protein_coding retained_intron MGP_CASTEiJ_T0009474.1 MGP_CASTEiJ_G0007662.1 mouse_genomes_project 11 79539495 79539592 - Gm23840 miRNA miRNA MGP_CASTEiJ_T0100438.1 MGP_CASTEiJ_G0037351.1 mouse_genomes_project 11 54671718 54671858 + Gm22884 snoRNA snoRNA MGP_CASTEiJ_T0027551.1 MGP_CASTEiJ_G0017386.1 mouse_genomes_project 11 18532114 18589507 + Peli1 protein_coding retained_intron MGP_CASTEiJ_T0027552.1 MGP_CASTEiJ_G0017386.1 mouse_genomes_project 11 18532114 18595750 + MGP_CASTEiJ_P0027552 Peli1 protein_coding protein_coding MGP_CASTEiJ_T0027553.1 MGP_CASTEiJ_G0017386.1 mouse_genomes_project 11 18532941 18594836 + Peli1 protein_coding retained_intron MGP_CASTEiJ_T0027554.1 MGP_CASTEiJ_G0017386.1 mouse_genomes_project 11 18581181 18595750 + MGP_CASTEiJ_P0027554 Peli1 protein_coding protein_coding MGP_CASTEiJ_T0030450.1 MGP_CASTEiJ_G0018076.1 mouse_genomes_project 11 78937648 78949600 + MGP_CASTEiJ_P0030450 Proca1 protein_coding protein_coding MGP_CASTEiJ_T0030451.1 MGP_CASTEiJ_G0018076.1 mouse_genomes_project 11 78937678 78949600 + MGP_CASTEiJ_P0030451 Proca1 protein_coding protein_coding MGP_CASTEiJ_T0030452.1 MGP_CASTEiJ_G0018076.1 mouse_genomes_project 11 78948515 78949180 + Proca1 protein_coding processed_transcript MGP_CASTEiJ_T0030835.1 MGP_CASTEiJ_G0018179.1 mouse_genomes_project 11 85800182 85807188 - MGP_CASTEiJ_P0030835 Lhx1 protein_coding protein_coding MGP_CASTEiJ_T0030836.1 MGP_CASTEiJ_G0018179.1 mouse_genomes_project 11 85801336 85803986 - MGP_CASTEiJ_P0030836 Lhx1 protein_coding protein_coding MGP_CASTEiJ_T0030837.1 MGP_CASTEiJ_G0018179.1 mouse_genomes_project 11 85801594 85803722 - Lhx1 protein_coding retained_intron MGP_CASTEiJ_T0030838.1 MGP_CASTEiJ_G0018179.1 mouse_genomes_project 11 85803550 85804366 - MGP_CASTEiJ_P0030838 Lhx1 protein_coding protein_coding MGP_CASTEiJ_T0028142.1 MGP_CASTEiJ_G0017530.1 mouse_genomes_project 11 47754776 47761622 + MGP_CASTEiJ_P0028142 protein_coding protein_coding MGP_CASTEiJ_T0012302.1 MGP_CASTEiJ_G0010465.1 mouse_genomes_project 11 70688659 70688987 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012292.1 MGP_CASTEiJ_G0010455.1 mouse_genomes_project 11 68072628 68073002 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031401.1 MGP_CASTEiJ_G0018308.1 mouse_genomes_project 11 98351615 98354749 + MGP_CASTEiJ_P0031401 Hoxb13 protein_coding protein_coding MGP_CASTEiJ_T0033701.1 MGP_CASTEiJ_G0018813.1 mouse_genomes_project 11 124895352 124911111 - MGP_CASTEiJ_P0033701 P4hb protein_coding protein_coding MGP_CASTEiJ_T0033702.1 MGP_CASTEiJ_G0018813.1 mouse_genomes_project 11 124895359 124896291 - P4hb protein_coding processed_transcript MGP_CASTEiJ_T0033703.1 MGP_CASTEiJ_G0018813.1 mouse_genomes_project 11 124895999 124910699 - MGP_CASTEiJ_P0033703 P4hb protein_coding protein_coding MGP_CASTEiJ_T0012414.1 MGP_CASTEiJ_G0010577.1 mouse_genomes_project 11 118749305 118749759 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033659.1 MGP_CASTEiJ_G0018805.1 mouse_genomes_project 11 124781291 124789416 + MGP_CASTEiJ_P0033659 Ccdc137 protein_coding protein_coding MGP_CASTEiJ_T0033660.1 MGP_CASTEiJ_G0018805.1 mouse_genomes_project 11 124781302 124782546 + Ccdc137 protein_coding processed_transcript MGP_CASTEiJ_T0033661.1 MGP_CASTEiJ_G0018805.1 mouse_genomes_project 11 124781313 124782021 + Ccdc137 protein_coding retained_intron MGP_CASTEiJ_T0033662.1 MGP_CASTEiJ_G0018805.1 mouse_genomes_project 11 124781317 124783290 + MGP_CASTEiJ_P0033662 Ccdc137 protein_coding protein_coding MGP_CASTEiJ_T0033663.1 MGP_CASTEiJ_G0018805.1 mouse_genomes_project 11 124781322 124786828 + MGP_CASTEiJ_P0033663 Ccdc137 protein_coding protein_coding MGP_CASTEiJ_T0033664.1 MGP_CASTEiJ_G0018805.1 mouse_genomes_project 11 124781361 124783183 + Ccdc137 protein_coding processed_transcript MGP_CASTEiJ_T0033665.1 MGP_CASTEiJ_G0018805.1 mouse_genomes_project 11 124781387 124789419 + MGP_CASTEiJ_P0033665 Ccdc137 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033666.1 MGP_CASTEiJ_G0018805.1 mouse_genomes_project 11 124782979 124786944 + Ccdc137 protein_coding retained_intron MGP_CASTEiJ_T0033667.1 MGP_CASTEiJ_G0018805.1 mouse_genomes_project 11 124786877 124789415 + Ccdc137 protein_coding processed_transcript MGP_CASTEiJ_T0012341.1 MGP_CASTEiJ_G0010504.1 mouse_genomes_project 11 86422235 86422644 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029947.1 MGP_CASTEiJ_G0017952.1 mouse_genomes_project 11 73076108 73161356 + MGP_CASTEiJ_P0029947 Ankfy1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029948.1 MGP_CASTEiJ_G0017952.1 mouse_genomes_project 11 73076119 73113610 + Ankfy1 protein_coding retained_intron MGP_CASTEiJ_T0029949.1 MGP_CASTEiJ_G0017952.1 mouse_genomes_project 11 73076119 73163343 + MGP_CASTEiJ_P0029949 Ankfy1 protein_coding protein_coding MGP_CASTEiJ_T0029950.1 MGP_CASTEiJ_G0017952.1 mouse_genomes_project 11 73076119 73161698 + MGP_CASTEiJ_P0029950 Ankfy1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029951.1 MGP_CASTEiJ_G0017952.1 mouse_genomes_project 11 73098389 73158065 + Ankfy1 protein_coding processed_transcript MGP_CASTEiJ_T0029952.1 MGP_CASTEiJ_G0017952.1 mouse_genomes_project 11 73152461 73153436 + Ankfy1 protein_coding retained_intron MGP_CASTEiJ_T0029953.1 MGP_CASTEiJ_G0017952.1 mouse_genomes_project 11 73157021 73158230 + Ankfy1 protein_coding retained_intron MGP_CASTEiJ_T0009447.1 MGP_CASTEiJ_G0007635.1 mouse_genomes_project 11 69033764 69033869 - Mir3062 miRNA miRNA MGP_CASTEiJ_T0009484.1 MGP_CASTEiJ_G0007672.1 mouse_genomes_project 11 89913639 89913731 + Mir378b miRNA miRNA MGP_CASTEiJ_T0032445.1 MGP_CASTEiJ_G0018566.1 mouse_genomes_project 11 106150822 106198589 - MGP_CASTEiJ_P0032445 Map3k14 protein_coding protein_coding MGP_CASTEiJ_T0032446.1 MGP_CASTEiJ_G0018566.1 mouse_genomes_project 11 106151864 106152915 - Map3k14 protein_coding processed_transcript MGP_CASTEiJ_T0032447.1 MGP_CASTEiJ_G0018566.1 mouse_genomes_project 11 106167925 106173163 - Map3k14 protein_coding processed_transcript MGP_CASTEiJ_T0032448.1 MGP_CASTEiJ_G0018566.1 mouse_genomes_project 11 106170237 106171038 - Map3k14 protein_coding processed_transcript MGP_CASTEiJ_T0033146.1 MGP_CASTEiJ_G0018711.1 mouse_genomes_project 11 119882167 119919796 + MGP_CASTEiJ_P0033146 Sap30bp protein_coding protein_coding MGP_CASTEiJ_T0033147.1 MGP_CASTEiJ_G0018711.1 mouse_genomes_project 11 119882458 119908722 + Sap30bp protein_coding processed_transcript MGP_CASTEiJ_T0033148.1 MGP_CASTEiJ_G0018711.1 mouse_genomes_project 11 119882522 119887280 + Sap30bp protein_coding processed_transcript MGP_CASTEiJ_T0033149.1 MGP_CASTEiJ_G0018711.1 mouse_genomes_project 11 119882559 119918607 + Sap30bp protein_coding processed_transcript MGP_CASTEiJ_T0003115.1 MGP_CASTEiJ_G0002896.1 mouse_genomes_project 11 70796061 70798034 - Gm12316 antisense antisense MGP_CASTEiJ_T0030484.1 MGP_CASTEiJ_G0018082.1 mouse_genomes_project 11 79081068 79085865 + MGP_CASTEiJ_P0030484 Aldoc protein_coding protein_coding MGP_CASTEiJ_T0030485.1 MGP_CASTEiJ_G0018082.1 mouse_genomes_project 11 79081267 79082781 + Aldoc protein_coding retained_intron MGP_CASTEiJ_T0030486.1 MGP_CASTEiJ_G0018082.1 mouse_genomes_project 11 79082295 79084844 + MGP_CASTEiJ_P0030486 Aldoc protein_coding protein_coding MGP_CASTEiJ_T0030487.1 MGP_CASTEiJ_G0018082.1 mouse_genomes_project 11 79082409 79084202 + Aldoc protein_coding processed_transcript MGP_CASTEiJ_T0030488.1 MGP_CASTEiJ_G0018082.1 mouse_genomes_project 11 79083148 79083645 + Aldoc protein_coding processed_transcript MGP_CASTEiJ_T0030489.1 MGP_CASTEiJ_G0018082.1 mouse_genomes_project 11 79083412 79084792 + Aldoc protein_coding processed_transcript MGP_CASTEiJ_T0028829.1 MGP_CASTEiJ_G0017721.1 mouse_genomes_project 11 59481803 59482700 - Pemt protein_coding processed_transcript MGP_CASTEiJ_T0028830.1 MGP_CASTEiJ_G0017721.1 mouse_genomes_project 11 59481803 59561628 - MGP_CASTEiJ_P0028830 Pemt protein_coding protein_coding MGP_CASTEiJ_T0028831.1 MGP_CASTEiJ_G0017721.1 mouse_genomes_project 11 59481803 59551612 - MGP_CASTEiJ_P0028831 Pemt protein_coding protein_coding MGP_CASTEiJ_T0028832.1 MGP_CASTEiJ_G0017721.1 mouse_genomes_project 11 59481803 59561632 - MGP_CASTEiJ_P0028832 Pemt protein_coding protein_coding MGP_CASTEiJ_T0028833.1 MGP_CASTEiJ_G0017721.1 mouse_genomes_project 11 59482016 59551513 - Pemt protein_coding processed_transcript MGP_CASTEiJ_T0028834.1 MGP_CASTEiJ_G0017721.1 mouse_genomes_project 11 59482033 59554778 - MGP_CASTEiJ_P0028834 Pemt protein_coding protein_coding MGP_CASTEiJ_T0028835.1 MGP_CASTEiJ_G0017721.1 mouse_genomes_project 11 59485345 59561640 - MGP_CASTEiJ_P0028835 Pemt protein_coding protein_coding MGP_CASTEiJ_T0028836.1 MGP_CASTEiJ_G0017721.1 mouse_genomes_project 11 59488063 59533397 - Pemt protein_coding processed_transcript MGP_CASTEiJ_T0028837.1 MGP_CASTEiJ_G0017721.1 mouse_genomes_project 11 59488083 59494766 - Pemt protein_coding processed_transcript MGP_CASTEiJ_T0028838.1 MGP_CASTEiJ_G0017721.1 mouse_genomes_project 11 59559692 59561636 - Pemt protein_coding processed_transcript MGP_CASTEiJ_T0027167.1 MGP_CASTEiJ_G0017304.1 mouse_genomes_project 11 1628229 1643605 - MGP_CASTEiJ_P0027167 Cabp7 protein_coding protein_coding MGP_CASTEiJ_T0006221.1 MGP_CASTEiJ_G0005197.1 mouse_genomes_project 11 126195190 126202402 + Gm12589 lincRNA lincRNA MGP_CASTEiJ_T0033410.1 MGP_CASTEiJ_G0018758.1 mouse_genomes_project 11 121959543 121973158 + MGP_CASTEiJ_P0033410 Afmid protein_coding protein_coding MGP_CASTEiJ_T0033411.1 MGP_CASTEiJ_G0018758.1 mouse_genomes_project 11 121959593 121970637 + MGP_CASTEiJ_P0033411 Afmid protein_coding protein_coding MGP_CASTEiJ_T0033412.1 MGP_CASTEiJ_G0018758.1 mouse_genomes_project 11 121959600 121966248 + Afmid protein_coding retained_intron MGP_CASTEiJ_T0033413.1 MGP_CASTEiJ_G0018758.1 mouse_genomes_project 11 121965701 121968818 + Afmid protein_coding retained_intron MGP_CASTEiJ_T0033414.1 MGP_CASTEiJ_G0018758.1 mouse_genomes_project 11 121965827 121970634 + Afmid protein_coding retained_intron MGP_CASTEiJ_T0033415.1 MGP_CASTEiJ_G0018758.1 mouse_genomes_project 11 121965870 121968925 + Afmid protein_coding retained_intron MGP_CASTEiJ_T0033668.1 MGP_CASTEiJ_G0018806.1 mouse_genomes_project 11 124789922 124792663 - Arl16 protein_coding processed_transcript MGP_CASTEiJ_T0033669.1 MGP_CASTEiJ_G0018806.1 mouse_genomes_project 11 124790377 124792330 - Arl16 protein_coding processed_transcript MGP_CASTEiJ_T0033670.1 MGP_CASTEiJ_G0018806.1 mouse_genomes_project 11 124790491 124792656 - MGP_CASTEiJ_P0033670 Arl16 protein_coding protein_coding MGP_CASTEiJ_T0033671.1 MGP_CASTEiJ_G0018806.1 mouse_genomes_project 11 124790646 124792521 - Arl16 protein_coding processed_transcript MGP_CASTEiJ_T0033672.1 MGP_CASTEiJ_G0018806.1 mouse_genomes_project 11 124790653 124792390 - Arl16 protein_coding processed_transcript MGP_CASTEiJ_T0033673.1 MGP_CASTEiJ_G0018806.1 mouse_genomes_project 11 124790668 124792476 - Arl16 protein_coding processed_transcript MGP_CASTEiJ_T0033674.1 MGP_CASTEiJ_G0018806.1 mouse_genomes_project 11 124790809 124792537 - Arl16 protein_coding processed_transcript MGP_CASTEiJ_T0033675.1 MGP_CASTEiJ_G0018806.1 mouse_genomes_project 11 124790823 124792477 - Arl16 protein_coding processed_transcript MGP_CASTEiJ_T0033676.1 MGP_CASTEiJ_G0018806.1 mouse_genomes_project 11 124790825 124792452 - Arl16 protein_coding processed_transcript MGP_CASTEiJ_T0033677.1 MGP_CASTEiJ_G0018806.1 mouse_genomes_project 11 124790970 124792489 - Arl16 protein_coding processed_transcript MGP_CASTEiJ_T0033678.1 MGP_CASTEiJ_G0018806.1 mouse_genomes_project 11 124791960 124792509 - Arl16 protein_coding processed_transcript MGP_CASTEiJ_T0027488.1 MGP_CASTEiJ_G0017369.1 mouse_genomes_project 11 14265218 14268292 + MGP_CASTEiJ_P0027488 Fbxo48 protein_coding protein_coding MGP_CASTEiJ_T0027489.1 MGP_CASTEiJ_G0017369.1 mouse_genomes_project 11 14265253 14268617 + MGP_CASTEiJ_P0027489 Fbxo48 protein_coding protein_coding MGP_CASTEiJ_T0009430.1 MGP_CASTEiJ_G0007618.1 mouse_genomes_project 11 51038979 51039090 - Gm24157 miRNA miRNA MGP_CASTEiJ_T0012410.1 MGP_CASTEiJ_G0010573.1 mouse_genomes_project 11 117377879 117380334 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012260.1 MGP_CASTEiJ_G0010423.1 mouse_genomes_project 11 54651438 54651608 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031538.1 MGP_CASTEiJ_G0018341.1 mouse_genomes_project 11 99782580 99851767 - MGP_CASTEiJ_P0031538 Srcin1 protein_coding protein_coding MGP_CASTEiJ_T0031539.1 MGP_CASTEiJ_G0018341.1 mouse_genomes_project 11 99787248 99850608 - MGP_CASTEiJ_P0031539 Srcin1 protein_coding protein_coding MGP_CASTEiJ_T0031540.1 MGP_CASTEiJ_G0018341.1 mouse_genomes_project 11 99787322 99851612 - MGP_CASTEiJ_P0031540 Srcin1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031541.1 MGP_CASTEiJ_G0018341.1 mouse_genomes_project 11 99792019 99850499 - MGP_CASTEiJ_P0031541 Srcin1 protein_coding protein_coding MGP_CASTEiJ_T0031542.1 MGP_CASTEiJ_G0018341.1 mouse_genomes_project 11 99810440 99850484 - MGP_CASTEiJ_P0031542 Srcin1 protein_coding protein_coding MGP_CASTEiJ_T0031543.1 MGP_CASTEiJ_G0018341.1 mouse_genomes_project 11 99828492 99851777 - Srcin1 protein_coding processed_transcript MGP_CASTEiJ_T0012286.1 MGP_CASTEiJ_G0010449.1 mouse_genomes_project 11 63010354 63010587 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101517.1 MGP_CASTEiJ_G0038412.1 mouse_genomes_project 11 107595256 107596586 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0027692.1 MGP_CASTEiJ_G0017413.1 mouse_genomes_project 11 24074339 24159792 + MGP_CASTEiJ_P0027692 Fancl protein_coding protein_coding MGP_CASTEiJ_T0027693.1 MGP_CASTEiJ_G0017413.1 mouse_genomes_project 11 24075408 24157046 + Fancl protein_coding processed_transcript MGP_CASTEiJ_T0027694.1 MGP_CASTEiJ_G0017413.1 mouse_genomes_project 11 24075408 24116992 + MGP_CASTEiJ_P0027694 Fancl protein_coding protein_coding MGP_CASTEiJ_T0027695.1 MGP_CASTEiJ_G0017413.1 mouse_genomes_project 11 24075408 24159337 + MGP_CASTEiJ_P0027695 Fancl protein_coding protein_coding MGP_CASTEiJ_T0027696.1 MGP_CASTEiJ_G0017413.1 mouse_genomes_project 11 24156257 24159346 + MGP_CASTEiJ_P0027696 Fancl protein_coding protein_coding MGP_CASTEiJ_T0006061.1 MGP_CASTEiJ_G0005075.1 mouse_genomes_project 11 42416616 42610267 + Gm12153 lincRNA lincRNA MGP_CASTEiJ_T0030576.1 MGP_CASTEiJ_G0018108.1 mouse_genomes_project 11 80374141 80384289 - MGP_CASTEiJ_P0030576 protein_coding protein_coding MGP_CASTEiJ_T0012254.1 MGP_CASTEiJ_G0010417.1 mouse_genomes_project 11 53296026 53297158 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028149.1 MGP_CASTEiJ_G0017534.1 mouse_genomes_project 11 47841259 47843348 - MGP_CASTEiJ_P0028149 protein_coding protein_coding MGP_CASTEiJ_T0012158.1 MGP_CASTEiJ_G0010321.1 mouse_genomes_project 11 16716242 16724715 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009528.1 MGP_CASTEiJ_G0007716.1 mouse_genomes_project 11 124651180 124651234 - Mir6935 miRNA miRNA MGP_CASTEiJ_T0012363.1 MGP_CASTEiJ_G0010526.1 mouse_genomes_project 11 97555916 97556092 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003085.1 MGP_CASTEiJ_G0002873.1 mouse_genomes_project 11 62275768 62278384 - Gm12280 antisense antisense MGP_CASTEiJ_T0028645.1 MGP_CASTEiJ_G0017658.1 mouse_genomes_project 11 57326218 57385018 + MGP_CASTEiJ_P0028645 Larp1 protein_coding protein_coding MGP_CASTEiJ_T0028646.1 MGP_CASTEiJ_G0017658.1 mouse_genomes_project 11 57326218 57385021 + MGP_CASTEiJ_P0028646 Larp1 protein_coding protein_coding MGP_CASTEiJ_T0028647.1 MGP_CASTEiJ_G0017658.1 mouse_genomes_project 11 57326347 57381682 + MGP_CASTEiJ_P0028647 Larp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028648.1 MGP_CASTEiJ_G0017658.1 mouse_genomes_project 11 57363676 57365077 + Larp1 protein_coding retained_intron MGP_CASTEiJ_T0012119.1 MGP_CASTEiJ_G0010282.1 mouse_genomes_project 11 2574928 2575375 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099222.1 MGP_CASTEiJ_G0036135.1 mouse_genomes_project 11 21362043 21362188 - Gm23827 snRNA snRNA MGP_CASTEiJ_T0030573.1 MGP_CASTEiJ_G0018106.1 mouse_genomes_project 11 80360403 80363497 - MGP_CASTEiJ_P0030573 Omg protein_coding protein_coding MGP_CASTEiJ_T0010975.1 MGP_CASTEiJ_G0009163.1 mouse_genomes_project 11 73190948 73191140 - Gm22075 misc_RNA misc_RNA MGP_CASTEiJ_T0029808.1 MGP_CASTEiJ_G0017925.1 mouse_genomes_project 11 71072833 71176812 + MGP_CASTEiJ_P0029808 Rabep1 protein_coding protein_coding MGP_CASTEiJ_T0029809.1 MGP_CASTEiJ_G0017925.1 mouse_genomes_project 11 71072837 71175006 + Rabep1 protein_coding retained_intron MGP_CASTEiJ_T0029810.1 MGP_CASTEiJ_G0017925.1 mouse_genomes_project 11 71072847 71127319 + MGP_CASTEiJ_P0029810 Rabep1 protein_coding protein_coding MGP_CASTEiJ_T0029811.1 MGP_CASTEiJ_G0017925.1 mouse_genomes_project 11 71072854 71175001 + MGP_CASTEiJ_P0029811 Rabep1 protein_coding protein_coding MGP_CASTEiJ_T0029812.1 MGP_CASTEiJ_G0017925.1 mouse_genomes_project 11 71072980 71174643 + MGP_CASTEiJ_P0029812 Rabep1 protein_coding protein_coding MGP_CASTEiJ_T0029813.1 MGP_CASTEiJ_G0017925.1 mouse_genomes_project 11 71072997 71174349 + MGP_CASTEiJ_P0029813 Rabep1 protein_coding protein_coding MGP_CASTEiJ_T0029814.1 MGP_CASTEiJ_G0017925.1 mouse_genomes_project 11 71073030 71174187 + MGP_CASTEiJ_P0029814 Rabep1 protein_coding protein_coding MGP_CASTEiJ_T0029815.1 MGP_CASTEiJ_G0017925.1 mouse_genomes_project 11 71073030 71174187 + MGP_CASTEiJ_P0029815 Rabep1 protein_coding protein_coding MGP_CASTEiJ_T0006023.1 MGP_CASTEiJ_G0005043.1 mouse_genomes_project 11 20154593 20155674 + Gm12052 lincRNA lincRNA MGP_CASTEiJ_T0012110.1 MGP_CASTEiJ_G0010273.1 mouse_genomes_project 11 292868 293344 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100457.1 MGP_CASTEiJ_G0037370.1 mouse_genomes_project 11 77690737 77690858 + Gm22772 snoRNA snoRNA MGP_CASTEiJ_T0030022.1 MGP_CASTEiJ_G0017975.1 mouse_genomes_project 11 73926999 73932653 - MGP_CASTEiJ_P0030022 protein_coding protein_coding MGP_CASTEiJ_T0028106.1 MGP_CASTEiJ_G0017519.1 mouse_genomes_project 11 45452506 45489915 + MGP_CASTEiJ_P0028106 Timd4 protein_coding protein_coding MGP_CASTEiJ_T0027490.1 MGP_CASTEiJ_G0017370.1 mouse_genomes_project 11 14283272 14322402 - MGP_CASTEiJ_P0027490 Plek protein_coding protein_coding MGP_CASTEiJ_T0027491.1 MGP_CASTEiJ_G0017370.1 mouse_genomes_project 11 14283530 14366582 - MGP_CASTEiJ_P0027491 Plek protein_coding protein_coding MGP_CASTEiJ_T0027492.1 MGP_CASTEiJ_G0017370.1 mouse_genomes_project 11 14308830 14316968 - MGP_CASTEiJ_P0027492 Plek protein_coding protein_coding MGP_CASTEiJ_T0016477.1 MGP_CASTEiJ_G0014495.1 mouse_genomes_project 11 72574917 72578233 + 4930563E22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016478.1 MGP_CASTEiJ_G0014495.1 mouse_genomes_project 11 72574951 72578227 + 4930563E22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0028257.1 MGP_CASTEiJ_G0017562.1 mouse_genomes_project 11 49150797 49160580 + MGP_CASTEiJ_P0028257 Hnrnph1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028258.1 MGP_CASTEiJ_G0017562.1 mouse_genomes_project 11 49150797 49160580 + MGP_CASTEiJ_P0028258 Hnrnph1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028259.1 MGP_CASTEiJ_G0017562.1 mouse_genomes_project 11 49150847 49161892 + Hnrnph1 protein_coding processed_transcript MGP_CASTEiJ_T0028260.1 MGP_CASTEiJ_G0017562.1 mouse_genomes_project 11 49150861 49157278 + Hnrnph1 protein_coding processed_transcript MGP_CASTEiJ_T0028261.1 MGP_CASTEiJ_G0017562.1 mouse_genomes_project 11 49150865 49157864 + Hnrnph1 protein_coding processed_transcript MGP_CASTEiJ_T0028262.1 MGP_CASTEiJ_G0017562.1 mouse_genomes_project 11 49150865 49160591 + Hnrnph1 protein_coding processed_transcript MGP_CASTEiJ_T0028263.1 MGP_CASTEiJ_G0017562.1 mouse_genomes_project 11 49150865 49161892 + MGP_CASTEiJ_P0028263 Hnrnph1 protein_coding protein_coding MGP_CASTEiJ_T0028264.1 MGP_CASTEiJ_G0017562.1 mouse_genomes_project 11 49151387 49156809 + Hnrnph1 protein_coding processed_transcript MGP_CASTEiJ_T0028265.1 MGP_CASTEiJ_G0017562.1 mouse_genomes_project 11 49151387 49153316 + Hnrnph1 protein_coding processed_transcript MGP_CASTEiJ_T0028266.1 MGP_CASTEiJ_G0017562.1 mouse_genomes_project 11 49151387 49154093 + Hnrnph1 protein_coding processed_transcript MGP_CASTEiJ_T0028267.1 MGP_CASTEiJ_G0017562.1 mouse_genomes_project 11 49151397 49160591 + Hnrnph1 protein_coding processed_transcript MGP_CASTEiJ_T0028268.1 MGP_CASTEiJ_G0017562.1 mouse_genomes_project 11 49157618 49158944 + Hnrnph1 protein_coding processed_transcript MGP_CASTEiJ_T0028269.1 MGP_CASTEiJ_G0017562.1 mouse_genomes_project 11 49157758 49158712 + Hnrnph1 protein_coding processed_transcript MGP_CASTEiJ_T0028270.1 MGP_CASTEiJ_G0017562.1 mouse_genomes_project 11 49157913 49158599 + Hnrnph1 protein_coding processed_transcript MGP_CASTEiJ_T0028271.1 MGP_CASTEiJ_G0017562.1 mouse_genomes_project 11 49158490 49159377 + Hnrnph1 protein_coding processed_transcript MGP_CASTEiJ_T0098470.1 MGP_CASTEiJ_G0035401.1 mouse_genomes_project 11 120319108 120319228 - n-R5s74 rRNA rRNA MGP_CASTEiJ_T0098460.1 MGP_CASTEiJ_G0035391.1 mouse_genomes_project 11 59320258 59320395 + Gm24939 rRNA rRNA MGP_CASTEiJ_T0016533.1 MGP_CASTEiJ_G0014530.1 mouse_genomes_project 11 111044737 111046852 + Gm11650 processed_transcript processed_transcript MGP_CASTEiJ_T0006072.1 MGP_CASTEiJ_G0005084.1 mouse_genomes_project 11 48999631 49057170 + Gm26542 lincRNA lincRNA MGP_CASTEiJ_T0006088.1 MGP_CASTEiJ_G0005098.1 mouse_genomes_project 11 61519271 61521443 + Gm26964 lincRNA lincRNA MGP_CASTEiJ_T0027399.1 MGP_CASTEiJ_G0017352.1 mouse_genomes_project 11 5949126 6094041 - MGP_CASTEiJ_P0027399 Pkd1l1 protein_coding protein_coding MGP_CASTEiJ_T0027400.1 MGP_CASTEiJ_G0017352.1 mouse_genomes_project 11 5949193 6069692 - MGP_CASTEiJ_P0027400 Pkd1l1 protein_coding protein_coding MGP_CASTEiJ_T0027401.1 MGP_CASTEiJ_G0017352.1 mouse_genomes_project 11 5965910 5981379 - Pkd1l1 protein_coding processed_transcript MGP_CASTEiJ_T0012388.1 MGP_CASTEiJ_G0010551.1 mouse_genomes_project 11 105614421 105615175 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012338.1 MGP_CASTEiJ_G0010501.1 mouse_genomes_project 11 84071761 84072594 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032596.1 MGP_CASTEiJ_G0018600.1 mouse_genomes_project 11 109260631 109299571 - Strada protein_coding processed_transcript MGP_CASTEiJ_T0032597.1 MGP_CASTEiJ_G0018600.1 mouse_genomes_project 11 109260652 109291198 - MGP_CASTEiJ_P0032597 Strada protein_coding protein_coding MGP_CASTEiJ_T0032598.1 MGP_CASTEiJ_G0018600.1 mouse_genomes_project 11 109261149 109291224 - MGP_CASTEiJ_P0032598 Strada protein_coding protein_coding MGP_CASTEiJ_T0032599.1 MGP_CASTEiJ_G0018600.1 mouse_genomes_project 11 109265772 109291201 - MGP_CASTEiJ_P0032599 Strada protein_coding protein_coding MGP_CASTEiJ_T0032600.1 MGP_CASTEiJ_G0018600.1 mouse_genomes_project 11 109280902 109291234 - MGP_CASTEiJ_P0032600 Strada protein_coding protein_coding MGP_CASTEiJ_T0031170.1 MGP_CASTEiJ_G0018255.1 mouse_genomes_project 11 95741385 95776984 + MGP_CASTEiJ_P0031170 Mbtd1 protein_coding protein_coding MGP_CASTEiJ_T0031171.1 MGP_CASTEiJ_G0018255.1 mouse_genomes_project 11 95741625 95776994 + Mbtd1 protein_coding processed_transcript MGP_CASTEiJ_T0031172.1 MGP_CASTEiJ_G0018255.1 mouse_genomes_project 11 95741726 95764491 + Mbtd1 protein_coding processed_transcript MGP_CASTEiJ_T0031173.1 MGP_CASTEiJ_G0018255.1 mouse_genomes_project 11 95741727 95765945 + Mbtd1 protein_coding processed_transcript MGP_CASTEiJ_T0031174.1 MGP_CASTEiJ_G0018255.1 mouse_genomes_project 11 95741736 95805725 + MGP_CASTEiJ_P0031174 Mbtd1 protein_coding protein_coding MGP_CASTEiJ_T0031175.1 MGP_CASTEiJ_G0018255.1 mouse_genomes_project 11 95741893 95804501 + MGP_CASTEiJ_P0031175 Mbtd1 protein_coding protein_coding MGP_CASTEiJ_T0031176.1 MGP_CASTEiJ_G0018255.1 mouse_genomes_project 11 95742402 95789037 + MGP_CASTEiJ_P0031176 Mbtd1 protein_coding protein_coding MGP_CASTEiJ_T0031177.1 MGP_CASTEiJ_G0018255.1 mouse_genomes_project 11 95765528 95767960 + Mbtd1 protein_coding processed_transcript MGP_CASTEiJ_T0031178.1 MGP_CASTEiJ_G0018255.1 mouse_genomes_project 11 95767954 95791524 + Mbtd1 protein_coding processed_transcript MGP_CASTEiJ_T0031179.1 MGP_CASTEiJ_G0018255.1 mouse_genomes_project 11 95773265 95791231 + Mbtd1 protein_coding processed_transcript MGP_CASTEiJ_T0031180.1 MGP_CASTEiJ_G0018255.1 mouse_genomes_project 11 95778576 95785020 + Mbtd1 protein_coding processed_transcript MGP_CASTEiJ_T0031181.1 MGP_CASTEiJ_G0018255.1 mouse_genomes_project 11 95783748 95797567 + Mbtd1 protein_coding processed_transcript MGP_CASTEiJ_T0009523.1 MGP_CASTEiJ_G0007711.1 mouse_genomes_project 11 123645702 123645792 + Mir1932 miRNA miRNA MGP_CASTEiJ_T0027933.1 MGP_CASTEiJ_G0017472.1 mouse_genomes_project 11 32836720 32862296 - MGP_CASTEiJ_P0027933 Spdl1 protein_coding protein_coding MGP_CASTEiJ_T0027934.1 MGP_CASTEiJ_G0017472.1 mouse_genomes_project 11 32850395 32852382 - Spdl1 protein_coding retained_intron MGP_CASTEiJ_T0027935.1 MGP_CASTEiJ_G0017472.1 mouse_genomes_project 11 32858817 32862247 - Spdl1 protein_coding retained_intron MGP_CASTEiJ_T0032307.1 MGP_CASTEiJ_G0018540.1 mouse_genomes_project 11 105277498 105284165 + MGP_CASTEiJ_P0032307 Grn protein_coding protein_coding MGP_CASTEiJ_T0032308.1 MGP_CASTEiJ_G0018540.1 mouse_genomes_project 11 105277663 105284169 + MGP_CASTEiJ_P0032308 Grn protein_coding unknown_likely_coding MGP_CASTEiJ_T0032309.1 MGP_CASTEiJ_G0018540.1 mouse_genomes_project 11 105277701 105281800 + MGP_CASTEiJ_P0032309 Grn protein_coding protein_coding MGP_CASTEiJ_T0032310.1 MGP_CASTEiJ_G0018540.1 mouse_genomes_project 11 105280161 105281612 + Grn protein_coding retained_intron MGP_CASTEiJ_T0032311.1 MGP_CASTEiJ_G0018540.1 mouse_genomes_project 11 105281286 105281947 + Grn protein_coding retained_intron MGP_CASTEiJ_T0032312.1 MGP_CASTEiJ_G0018540.1 mouse_genomes_project 11 105281453 105282616 + Grn protein_coding retained_intron MGP_CASTEiJ_T0032313.1 MGP_CASTEiJ_G0018540.1 mouse_genomes_project 11 105281456 105282245 + Grn protein_coding retained_intron MGP_CASTEiJ_T0032314.1 MGP_CASTEiJ_G0018540.1 mouse_genomes_project 11 105282071 105283298 + Grn protein_coding retained_intron MGP_CASTEiJ_T0032315.1 MGP_CASTEiJ_G0018540.1 mouse_genomes_project 11 105282638 105283927 + MGP_CASTEiJ_P0032315 Grn protein_coding protein_coding MGP_CASTEiJ_T0032316.1 MGP_CASTEiJ_G0018540.1 mouse_genomes_project 11 105282659 105283418 + Grn protein_coding retained_intron MGP_CASTEiJ_T0032317.1 MGP_CASTEiJ_G0018540.1 mouse_genomes_project 11 105282769 105284363 + MGP_CASTEiJ_P0032317 Grn protein_coding protein_coding MGP_CASTEiJ_T0031038.1 MGP_CASTEiJ_G0018221.1 mouse_genomes_project 11 89289183 89291399 + MGP_CASTEiJ_P0031038 protein_coding protein_coding MGP_CASTEiJ_T0031039.1 MGP_CASTEiJ_G0018221.1 mouse_genomes_project 11 89289475 89304030 + MGP_CASTEiJ_P0031039 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031040.1 MGP_CASTEiJ_G0018221.1 mouse_genomes_project 11 89290550 89298227 + MGP_CASTEiJ_P0031040 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031041.1 MGP_CASTEiJ_G0018221.1 mouse_genomes_project 11 89302153 89303437 + MGP_CASTEiJ_P0031041 protein_coding protein_coding MGP_CASTEiJ_T0031042.1 MGP_CASTEiJ_G0018221.1 mouse_genomes_project 11 89302728 89303985 + protein_coding retained_intron MGP_CASTEiJ_T0027424.1 MGP_CASTEiJ_G0017358.1 mouse_genomes_project 11 8370037 8516552 + MGP_CASTEiJ_P0027424 Vwc2 protein_coding protein_coding MGP_CASTEiJ_T0027425.1 MGP_CASTEiJ_G0017358.1 mouse_genomes_project 11 8370558 8523254 + MGP_CASTEiJ_P0027425 Vwc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027426.1 MGP_CASTEiJ_G0017358.1 mouse_genomes_project 11 8371664 8520961 + MGP_CASTEiJ_P0027426 Vwc2 protein_coding protein_coding MGP_CASTEiJ_T0027427.1 MGP_CASTEiJ_G0017358.1 mouse_genomes_project 11 8372298 8384034 + Vwc2 protein_coding processed_transcript MGP_CASTEiJ_T0028349.1 MGP_CASTEiJ_G0017583.1 mouse_genomes_project 11 50475656 50498619 + MGP_CASTEiJ_P0028349 Phykpl protein_coding protein_coding MGP_CASTEiJ_T0028350.1 MGP_CASTEiJ_G0017583.1 mouse_genomes_project 11 50475656 50497389 + MGP_CASTEiJ_P0028350 Phykpl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028351.1 MGP_CASTEiJ_G0017583.1 mouse_genomes_project 11 50475684 50495364 + MGP_CASTEiJ_P0028351 Phykpl protein_coding protein_coding MGP_CASTEiJ_T0028352.1 MGP_CASTEiJ_G0017583.1 mouse_genomes_project 11 50475685 50490756 + MGP_CASTEiJ_P0028352 Phykpl protein_coding unknown_likely_coding MGP_CASTEiJ_T0028353.1 MGP_CASTEiJ_G0017583.1 mouse_genomes_project 11 50475702 50491173 + Phykpl protein_coding retained_intron MGP_CASTEiJ_T0028354.1 MGP_CASTEiJ_G0017583.1 mouse_genomes_project 11 50475706 50478250 + Phykpl protein_coding retained_intron MGP_CASTEiJ_T0028355.1 MGP_CASTEiJ_G0017583.1 mouse_genomes_project 11 50475710 50485649 + Phykpl protein_coding retained_intron MGP_CASTEiJ_T0028356.1 MGP_CASTEiJ_G0017583.1 mouse_genomes_project 11 50475720 50493802 + MGP_CASTEiJ_P0028356 Phykpl protein_coding unknown_likely_coding MGP_CASTEiJ_T0028357.1 MGP_CASTEiJ_G0017583.1 mouse_genomes_project 11 50483789 50486224 + Phykpl protein_coding retained_intron MGP_CASTEiJ_T0028358.1 MGP_CASTEiJ_G0017583.1 mouse_genomes_project 11 50493423 50495224 + Phykpl protein_coding retained_intron MGP_CASTEiJ_T0016438.1 MGP_CASTEiJ_G0014472.1 mouse_genomes_project 11 20422648 20424976 + 9130230N09Rik processed_transcript processed_transcript MGP_CASTEiJ_T0100478.1 MGP_CASTEiJ_G0037391.1 mouse_genomes_project 11 109627538 109627671 + Gm22711 snoRNA snoRNA MGP_CASTEiJ_T0031414.1 MGP_CASTEiJ_G0018315.1 mouse_genomes_project 11 98490778 98515376 + MGP_CASTEiJ_P0031414 Hoxb3 protein_coding protein_coding MGP_CASTEiJ_T0031415.1 MGP_CASTEiJ_G0018315.1 mouse_genomes_project 11 98495435 98511740 + MGP_CASTEiJ_P0031415 Hoxb3 protein_coding protein_coding MGP_CASTEiJ_T0031416.1 MGP_CASTEiJ_G0018315.1 mouse_genomes_project 11 98508425 98509218 + Hoxb3 protein_coding processed_transcript MGP_CASTEiJ_T0031417.1 MGP_CASTEiJ_G0018315.1 mouse_genomes_project 11 98511202 98513950 + MGP_CASTEiJ_P0031417 Hoxb3 protein_coding protein_coding MGP_CASTEiJ_T0012406.1 MGP_CASTEiJ_G0010569.1 mouse_genomes_project 11 114758915 114759744 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009402.1 MGP_CASTEiJ_G0007590.1 mouse_genomes_project 11 997736 997819 + Mir3060 miRNA miRNA MGP_CASTEiJ_T0028719.1 MGP_CASTEiJ_G0017690.1 mouse_genomes_project 11 58305887 58324472 + MGP_CASTEiJ_P0028719 2810021J22Rik protein_coding protein_coding MGP_CASTEiJ_T0028720.1 MGP_CASTEiJ_G0017690.1 mouse_genomes_project 11 58305910 58327119 + MGP_CASTEiJ_P0028720 2810021J22Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0028721.1 MGP_CASTEiJ_G0017690.1 mouse_genomes_project 11 58305938 58319188 + MGP_CASTEiJ_P0028721 2810021J22Rik protein_coding protein_coding MGP_CASTEiJ_T0031679.1 MGP_CASTEiJ_G0018373.1 mouse_genomes_project 11 100950692 100963356 - MGP_CASTEiJ_P0031679 Ormdl3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031680.1 MGP_CASTEiJ_G0018373.1 mouse_genomes_project 11 100954720 100963482 - MGP_CASTEiJ_P0031680 Ormdl3 protein_coding protein_coding MGP_CASTEiJ_T0009498.1 MGP_CASTEiJ_G0007686.1 mouse_genomes_project 11 100602257 100602314 + Mir5119 miRNA miRNA MGP_CASTEiJ_T0009517.1 MGP_CASTEiJ_G0007705.1 mouse_genomes_project 11 119729897 119729960 + Mir5621 miRNA miRNA MGP_CASTEiJ_T0030591.1 MGP_CASTEiJ_G0018112.1 mouse_genomes_project 11 80875775 80921484 + MGP_CASTEiJ_P0030591 Suz12 protein_coding protein_coding MGP_CASTEiJ_T0030592.1 MGP_CASTEiJ_G0018112.1 mouse_genomes_project 11 80875775 80921485 + MGP_CASTEiJ_P0030592 Suz12 protein_coding protein_coding MGP_CASTEiJ_T0030593.1 MGP_CASTEiJ_G0018112.1 mouse_genomes_project 11 80878256 80885214 + Suz12 protein_coding retained_intron MGP_CASTEiJ_T0030594.1 MGP_CASTEiJ_G0018112.1 mouse_genomes_project 11 80878287 80901791 + Suz12 protein_coding retained_intron MGP_CASTEiJ_T0030595.1 MGP_CASTEiJ_G0018112.1 mouse_genomes_project 11 80878461 80901721 + MGP_CASTEiJ_P0030595 Suz12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030596.1 MGP_CASTEiJ_G0018112.1 mouse_genomes_project 11 80912641 80919352 + MGP_CASTEiJ_P0030596 Suz12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012255.1 MGP_CASTEiJ_G0010418.1 mouse_genomes_project 11 53338686 53338946 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030276.1 MGP_CASTEiJ_G0018045.1 mouse_genomes_project 11 77352578 77391775 - MGP_CASTEiJ_P0030276 Gosr1 protein_coding protein_coding MGP_CASTEiJ_T0030277.1 MGP_CASTEiJ_G0018045.1 mouse_genomes_project 11 77374488 77391763 - Gosr1 protein_coding processed_transcript MGP_CASTEiJ_T0012418.1 MGP_CASTEiJ_G0010581.1 mouse_genomes_project 11 119565030 119565099 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030716.1 MGP_CASTEiJ_G0018143.1 mouse_genomes_project 11 84000733 84009313 - MGP_CASTEiJ_P0030716 Nle1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030717.1 MGP_CASTEiJ_G0018143.1 mouse_genomes_project 11 84000734 84009326 - MGP_CASTEiJ_P0030717 Nle1 protein_coding protein_coding MGP_CASTEiJ_T0030718.1 MGP_CASTEiJ_G0018143.1 mouse_genomes_project 11 84000738 84001780 - Nle1 protein_coding retained_intron MGP_CASTEiJ_T0030719.1 MGP_CASTEiJ_G0018143.1 mouse_genomes_project 11 84000746 84005191 - MGP_CASTEiJ_P0030719 Nle1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030720.1 MGP_CASTEiJ_G0018143.1 mouse_genomes_project 11 84001702 84005170 - Nle1 protein_coding retained_intron MGP_CASTEiJ_T0030721.1 MGP_CASTEiJ_G0018143.1 mouse_genomes_project 11 84004986 84005529 - Nle1 protein_coding retained_intron MGP_CASTEiJ_T0030722.1 MGP_CASTEiJ_G0018143.1 mouse_genomes_project 11 84005684 84008602 - MGP_CASTEiJ_P0030722 Nle1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030723.1 MGP_CASTEiJ_G0018143.1 mouse_genomes_project 11 84005814 84009257 - Nle1 protein_coding retained_intron MGP_CASTEiJ_T0016546.1 MGP_CASTEiJ_G0014536.1 mouse_genomes_project 11 123812908 123839758 + Gm11762 processed_transcript processed_transcript MGP_CASTEiJ_T0012268.1 MGP_CASTEiJ_G0010431.1 mouse_genomes_project 11 58050195 58083778 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029514.1 MGP_CASTEiJ_G0017865.1 mouse_genomes_project 11 69928046 69929943 - MGP_CASTEiJ_P0029514 4933402P03Rik protein_coding protein_coding MGP_CASTEiJ_T0028095.1 MGP_CASTEiJ_G0017513.1 mouse_genomes_project 11 45060769 45087283 + MGP_CASTEiJ_P0028095 Havcr2 protein_coding protein_coding MGP_CASTEiJ_T0028096.1 MGP_CASTEiJ_G0017513.1 mouse_genomes_project 11 45060803 45087274 + MGP_CASTEiJ_P0028096 Havcr2 protein_coding protein_coding MGP_CASTEiJ_T0028828.1 MGP_CASTEiJ_G0017720.1 mouse_genomes_project 11 59474381 59476143 - MGP_CASTEiJ_P0028828 Rasd1 protein_coding protein_coding MGP_CASTEiJ_T0100437.1 MGP_CASTEiJ_G0037350.1 mouse_genomes_project 11 50641385 50641529 - Gm25291 snoRNA snoRNA MGP_CASTEiJ_T0029782.1 MGP_CASTEiJ_G0017919.1 mouse_genomes_project 11 70865494 70872570 - MGP_CASTEiJ_P0029782 Spag7 protein_coding protein_coding MGP_CASTEiJ_T0029783.1 MGP_CASTEiJ_G0017919.1 mouse_genomes_project 11 70865590 70872372 - Spag7 protein_coding retained_intron MGP_CASTEiJ_T0029784.1 MGP_CASTEiJ_G0017919.1 mouse_genomes_project 11 70865927 70872433 - Spag7 protein_coding retained_intron MGP_CASTEiJ_T0029785.1 MGP_CASTEiJ_G0017919.1 mouse_genomes_project 11 70865986 70872444 - MGP_CASTEiJ_P0029785 Spag7 protein_coding protein_coding MGP_CASTEiJ_T0012120.1 MGP_CASTEiJ_G0010283.1 mouse_genomes_project 11 2616227 2616504 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000812.1 MGP_CASTEiJ_G0000752.1 mouse_genomes_project 11 98141989 98142815 - TEC TEC MGP_CASTEiJ_T0033298.1 MGP_CASTEiJ_G0018738.1 mouse_genomes_project 11 120672883 120681866 - MGP_CASTEiJ_P0033298 Cygb protein_coding protein_coding MGP_CASTEiJ_T0006054.1 MGP_CASTEiJ_G0005068.1 mouse_genomes_project 11 32906243 32908457 + Gm12711 lincRNA lincRNA MGP_CASTEiJ_T0029533.1 MGP_CASTEiJ_G0017872.1 mouse_genomes_project 11 69999504 70002658 - MGP_CASTEiJ_P0029533 Kctd11 protein_coding protein_coding MGP_CASTEiJ_T0028699.1 MGP_CASTEiJ_G0017680.1 mouse_genomes_project 11 57964600 57965722 + MGP_CASTEiJ_P0028699 Olfr324 protein_coding protein_coding MGP_CASTEiJ_T0032609.1 MGP_CASTEiJ_G0018603.1 mouse_genomes_project 11 109348547 109355533 - MGP_CASTEiJ_P0032609 Ftsj3 protein_coding protein_coding MGP_CASTEiJ_T0032610.1 MGP_CASTEiJ_G0018603.1 mouse_genomes_project 11 109349304 109350104 - Ftsj3 protein_coding retained_intron MGP_CASTEiJ_T0032611.1 MGP_CASTEiJ_G0018603.1 mouse_genomes_project 11 109350414 109351960 - Ftsj3 protein_coding retained_intron MGP_CASTEiJ_T0032612.1 MGP_CASTEiJ_G0018603.1 mouse_genomes_project 11 109352781 109353401 - Ftsj3 protein_coding retained_intron MGP_CASTEiJ_T0032613.1 MGP_CASTEiJ_G0018603.1 mouse_genomes_project 11 109353705 109355250 - Ftsj3 protein_coding retained_intron MGP_CASTEiJ_T0032614.1 MGP_CASTEiJ_G0018603.1 mouse_genomes_project 11 109354280 109355258 - Ftsj3 protein_coding retained_intron MGP_CASTEiJ_T0012412.1 MGP_CASTEiJ_G0010575.1 mouse_genomes_project 11 118117795 118118928 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102007.1 MGP_CASTEiJ_G0038732.1 mouse_genomes_project 11 96904672 96905392 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0003219.1 MGP_CASTEiJ_G0002981.1 mouse_genomes_project 11 112229246 112231940 - Gm11670 antisense antisense MGP_CASTEiJ_T0032799.1 MGP_CASTEiJ_G0018640.1 mouse_genomes_project 11 112931710 112972708 - MGP_CASTEiJ_P0032799 Wipi1 protein_coding protein_coding MGP_CASTEiJ_T0032800.1 MGP_CASTEiJ_G0018640.1 mouse_genomes_project 11 112933536 112972708 - MGP_CASTEiJ_P0032800 Wipi1 protein_coding protein_coding MGP_CASTEiJ_T0032801.1 MGP_CASTEiJ_G0018640.1 mouse_genomes_project 11 112941893 112972708 - MGP_CASTEiJ_P0032801 Wipi1 protein_coding protein_coding MGP_CASTEiJ_T0032802.1 MGP_CASTEiJ_G0018640.1 mouse_genomes_project 11 112972514 112973243 - Wipi1 protein_coding processed_transcript MGP_CASTEiJ_T0032220.1 MGP_CASTEiJ_G0018530.1 mouse_genomes_project 11 104999325 105003802 + MGP_CASTEiJ_P0032220 G6pc3 protein_coding protein_coding MGP_CASTEiJ_T0032221.1 MGP_CASTEiJ_G0018530.1 mouse_genomes_project 11 104999374 105003802 + MGP_CASTEiJ_P0032221 G6pc3 protein_coding protein_coding MGP_CASTEiJ_T0032222.1 MGP_CASTEiJ_G0018530.1 mouse_genomes_project 11 104999460 105001838 + G6pc3 protein_coding processed_transcript MGP_CASTEiJ_T0032223.1 MGP_CASTEiJ_G0018530.1 mouse_genomes_project 11 104999531 105002899 + G6pc3 protein_coding processed_transcript MGP_CASTEiJ_T0032224.1 MGP_CASTEiJ_G0018530.1 mouse_genomes_project 11 105001504 105003351 + G6pc3 protein_coding processed_transcript MGP_CASTEiJ_T0032225.1 MGP_CASTEiJ_G0018530.1 mouse_genomes_project 11 105001715 105003297 + G6pc3 protein_coding processed_transcript MGP_CASTEiJ_T0032226.1 MGP_CASTEiJ_G0018530.1 mouse_genomes_project 11 105001721 105003450 + G6pc3 protein_coding processed_transcript MGP_CASTEiJ_T0012413.1 MGP_CASTEiJ_G0010576.1 mouse_genomes_project 11 118455873 118456175 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029776.1 MGP_CASTEiJ_G0017918.1 mouse_genomes_project 11 70858570 70864344 + MGP_CASTEiJ_P0029776 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029777.1 MGP_CASTEiJ_G0017918.1 mouse_genomes_project 11 70859061 70862639 + MGP_CASTEiJ_P0029777 protein_coding protein_coding MGP_CASTEiJ_T0029778.1 MGP_CASTEiJ_G0017918.1 mouse_genomes_project 11 70859146 70860280 + MGP_CASTEiJ_P0029778 protein_coding protein_coding MGP_CASTEiJ_T0029779.1 MGP_CASTEiJ_G0017918.1 mouse_genomes_project 11 70859549 70860309 + MGP_CASTEiJ_P0029779 protein_coding protein_coding MGP_CASTEiJ_T0029780.1 MGP_CASTEiJ_G0017918.1 mouse_genomes_project 11 70860200 70862678 + protein_coding retained_intron MGP_CASTEiJ_T0029781.1 MGP_CASTEiJ_G0017918.1 mouse_genomes_project 11 70862606 70864088 + MGP_CASTEiJ_P0029781 protein_coding protein_coding MGP_CASTEiJ_T0012313.1 MGP_CASTEiJ_G0010476.1 mouse_genomes_project 11 74786926 74787837 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003198.1 MGP_CASTEiJ_G0002962.1 mouse_genomes_project 11 106281010 106286348 + Arhgap27os3 antisense antisense MGP_CASTEiJ_T0003124.1 MGP_CASTEiJ_G0002905.1 mouse_genomes_project 11 80338844 80341157 - AU040972 antisense antisense MGP_CASTEiJ_T0100460.1 MGP_CASTEiJ_G0037373.1 mouse_genomes_project 11 78923411 78923476 - Snord42a snoRNA snoRNA MGP_CASTEiJ_T0016507.1 MGP_CASTEiJ_G0014511.1 mouse_genomes_project 11 99071613 99086502 - Gm11523 processed_transcript lincRNA MGP_CASTEiJ_T0016508.1 MGP_CASTEiJ_G0014511.1 mouse_genomes_project 11 99071906 99086508 - Gm11523 processed_transcript lincRNA MGP_CASTEiJ_T0016509.1 MGP_CASTEiJ_G0014511.1 mouse_genomes_project 11 99072035 99086488 - Gm11523 processed_transcript antisense MGP_CASTEiJ_T0029855.1 MGP_CASTEiJ_G0017930.1 mouse_genomes_project 11 71245315 71257694 - MGP_CASTEiJ_P0029855 Derl2 protein_coding protein_coding MGP_CASTEiJ_T0029856.1 MGP_CASTEiJ_G0017930.1 mouse_genomes_project 11 71245772 71257657 - MGP_CASTEiJ_P0029856 Derl2 protein_coding protein_coding MGP_CASTEiJ_T0029857.1 MGP_CASTEiJ_G0017930.1 mouse_genomes_project 11 71248684 71257623 - MGP_CASTEiJ_P0029857 Derl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029858.1 MGP_CASTEiJ_G0017930.1 mouse_genomes_project 11 71250454 71257597 - Derl2 protein_coding retained_intron MGP_CASTEiJ_T0029859.1 MGP_CASTEiJ_G0017930.1 mouse_genomes_project 11 71251446 71257629 - MGP_CASTEiJ_P0029859 Derl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029860.1 MGP_CASTEiJ_G0017930.1 mouse_genomes_project 11 71252890 71257566 - MGP_CASTEiJ_P0029860 Derl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030219.1 MGP_CASTEiJ_G0018033.1 mouse_genomes_project 11 76605851 76614213 - MGP_CASTEiJ_P0030219 Fam101b protein_coding protein_coding MGP_CASTEiJ_T0033846.1 MGP_CASTEiJ_G0018837.1 mouse_genomes_project 11 125416480 125419172 - MGP_CASTEiJ_P0033846 Cd7 protein_coding protein_coding MGP_CASTEiJ_T0033847.1 MGP_CASTEiJ_G0018837.1 mouse_genomes_project 11 125417636 125419172 - Cd7 protein_coding retained_intron MGP_CASTEiJ_T0030890.1 MGP_CASTEiJ_G0018191.1 mouse_genomes_project 11 86699670 87193816 + MGP_CASTEiJ_P0030890 Bcas3 protein_coding protein_coding MGP_CASTEiJ_T0030891.1 MGP_CASTEiJ_G0018191.1 mouse_genomes_project 11 86699670 87193817 + MGP_CASTEiJ_P0030891 Bcas3 protein_coding protein_coding MGP_CASTEiJ_T0030892.1 MGP_CASTEiJ_G0018191.1 mouse_genomes_project 11 86699670 86862010 + MGP_CASTEiJ_P0030892 Bcas3 protein_coding protein_coding MGP_CASTEiJ_T0030893.1 MGP_CASTEiJ_G0018191.1 mouse_genomes_project 11 86699688 86718507 + MGP_CASTEiJ_P0030893 Bcas3 protein_coding protein_coding MGP_CASTEiJ_T0030894.1 MGP_CASTEiJ_G0018191.1 mouse_genomes_project 11 86699715 87193119 + MGP_CASTEiJ_P0030894 Bcas3 protein_coding protein_coding MGP_CASTEiJ_T0030895.1 MGP_CASTEiJ_G0018191.1 mouse_genomes_project 11 86699715 87193119 + MGP_CASTEiJ_P0030895 Bcas3 protein_coding protein_coding MGP_CASTEiJ_T0030896.1 MGP_CASTEiJ_G0018191.1 mouse_genomes_project 11 86816215 87193816 + MGP_CASTEiJ_P0030896 Bcas3 protein_coding protein_coding MGP_CASTEiJ_T0030897.1 MGP_CASTEiJ_G0018191.1 mouse_genomes_project 11 86820809 86847073 + MGP_CASTEiJ_P0030897 Bcas3 protein_coding protein_coding MGP_CASTEiJ_T0030898.1 MGP_CASTEiJ_G0018191.1 mouse_genomes_project 11 86842632 86845995 + Bcas3 protein_coding processed_transcript MGP_CASTEiJ_T0030899.1 MGP_CASTEiJ_G0018191.1 mouse_genomes_project 11 86860645 87193816 + MGP_CASTEiJ_P0030899 Bcas3 protein_coding protein_coding MGP_CASTEiJ_T0030900.1 MGP_CASTEiJ_G0018191.1 mouse_genomes_project 11 86860656 87193816 + MGP_CASTEiJ_P0030900 Bcas3 protein_coding protein_coding MGP_CASTEiJ_T0030901.1 MGP_CASTEiJ_G0018191.1 mouse_genomes_project 11 86931960 86958217 + Bcas3 protein_coding processed_transcript MGP_CASTEiJ_T0030902.1 MGP_CASTEiJ_G0018191.1 mouse_genomes_project 11 86998763 87193813 + Bcas3 protein_coding processed_transcript MGP_CASTEiJ_T0030903.1 MGP_CASTEiJ_G0018191.1 mouse_genomes_project 11 87165600 87193159 + MGP_CASTEiJ_P0030903 Bcas3 protein_coding protein_coding MGP_CASTEiJ_T0030904.1 MGP_CASTEiJ_G0018191.1 mouse_genomes_project 11 87189185 87193404 + Bcas3 protein_coding processed_transcript MGP_CASTEiJ_T0030905.1 MGP_CASTEiJ_G0018191.1 mouse_genomes_project 11 87189738 87193076 + Bcas3 protein_coding processed_transcript MGP_CASTEiJ_T0012237.1 MGP_CASTEiJ_G0010400.1 mouse_genomes_project 11 47814648 47814957 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006007.1 MGP_CASTEiJ_G0005028.1 mouse_genomes_project 11 1150715 1152181 + Gm11958 lincRNA lincRNA MGP_CASTEiJ_T0031438.1 MGP_CASTEiJ_G0018320.1 mouse_genomes_project 11 98988926 99003967 + MGP_CASTEiJ_P0031438 Cbx1 protein_coding protein_coding MGP_CASTEiJ_T0031439.1 MGP_CASTEiJ_G0018320.1 mouse_genomes_project 11 98988936 99009695 + MGP_CASTEiJ_P0031439 Cbx1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031440.1 MGP_CASTEiJ_G0018320.1 mouse_genomes_project 11 98988958 99010186 + MGP_CASTEiJ_P0031440 Cbx1 protein_coding protein_coding MGP_CASTEiJ_T0031441.1 MGP_CASTEiJ_G0018320.1 mouse_genomes_project 11 98988974 99001413 + Cbx1 protein_coding retained_intron MGP_CASTEiJ_T0031442.1 MGP_CASTEiJ_G0018320.1 mouse_genomes_project 11 98989048 99010086 + MGP_CASTEiJ_P0031442 Cbx1 protein_coding protein_coding MGP_CASTEiJ_T0100427.1 MGP_CASTEiJ_G0037340.1 mouse_genomes_project 11 24826667 24826778 + Gm24850 snoRNA snoRNA MGP_CASTEiJ_T0012259.1 MGP_CASTEiJ_G0010422.1 mouse_genomes_project 11 54301143 54301386 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016454.1 MGP_CASTEiJ_G0014483.1 mouse_genomes_project 11 52647184 52651227 - A430108G06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016455.1 MGP_CASTEiJ_G0014483.1 mouse_genomes_project 11 52647260 52651235 - A430108G06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0009416.1 MGP_CASTEiJ_G0007604.1 mouse_genomes_project 11 26567693 26567762 - Mir216c miRNA miRNA MGP_CASTEiJ_T0029498.1 MGP_CASTEiJ_G0017860.1 mouse_genomes_project 11 69868806 69870885 - MGP_CASTEiJ_P0029498 Slc35g3 protein_coding protein_coding MGP_CASTEiJ_T0030020.1 MGP_CASTEiJ_G0017973.1 mouse_genomes_project 11 73847230 73850675 - MGP_CASTEiJ_P0030020 Olfr378 protein_coding protein_coding MGP_CASTEiJ_T0006083.1 MGP_CASTEiJ_G0005094.1 mouse_genomes_project 11 59433673 59434055 + 1810063I02Rik lincRNA lincRNA MGP_CASTEiJ_T0031811.1 MGP_CASTEiJ_G0018424.1 mouse_genomes_project 11 102375693 102377168 - MGP_CASTEiJ_P0031811 protein_coding protein_coding MGP_CASTEiJ_T0003230.1 MGP_CASTEiJ_G0002988.1 mouse_genomes_project 11 119283479 119285200 - Ict1os antisense antisense MGP_CASTEiJ_T0099255.1 MGP_CASTEiJ_G0036168.1 mouse_genomes_project 11 83665773 83665879 - Gm24612 snRNA snRNA MGP_CASTEiJ_T0030274.1 MGP_CASTEiJ_G0018043.1 mouse_genomes_project 11 77294000 77295207 + MGP_CASTEiJ_P0030274 Bhlha9 protein_coding protein_coding MGP_CASTEiJ_T0027072.1 MGP_CASTEiJ_G0017279.1 mouse_genomes_project 11 549585 721035 - MGP_CASTEiJ_P0027072 Osbp2 protein_coding protein_coding MGP_CASTEiJ_T0027073.1 MGP_CASTEiJ_G0017279.1 mouse_genomes_project 11 549585 569681 - MGP_CASTEiJ_P0027073 Osbp2 protein_coding protein_coding MGP_CASTEiJ_T0027074.1 MGP_CASTEiJ_G0017279.1 mouse_genomes_project 11 549772 569681 - MGP_CASTEiJ_P0027074 Osbp2 protein_coding protein_coding MGP_CASTEiJ_T0027075.1 MGP_CASTEiJ_G0017279.1 mouse_genomes_project 11 550597 720925 - MGP_CASTEiJ_P0027075 Osbp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027076.1 MGP_CASTEiJ_G0017279.1 mouse_genomes_project 11 565315 622656 - MGP_CASTEiJ_P0027076 Osbp2 protein_coding protein_coding MGP_CASTEiJ_T0027077.1 MGP_CASTEiJ_G0017279.1 mouse_genomes_project 11 565375 623609 - MGP_CASTEiJ_P0027077 Osbp2 protein_coding protein_coding MGP_CASTEiJ_T0027078.1 MGP_CASTEiJ_G0017279.1 mouse_genomes_project 11 572027 721035 - Osbp2 protein_coding processed_transcript MGP_CASTEiJ_T0028084.1 MGP_CASTEiJ_G0017511.1 mouse_genomes_project 11 44995491 45006314 + Fam71b protein_coding processed_transcript MGP_CASTEiJ_T0028085.1 MGP_CASTEiJ_G0017511.1 mouse_genomes_project 11 45003662 45007660 + MGP_CASTEiJ_P0028085 Fam71b protein_coding protein_coding MGP_CASTEiJ_T0027779.1 MGP_CASTEiJ_G0017429.1 mouse_genomes_project 11 27840907 27843669 + MGP_CASTEiJ_P0027779 protein_coding protein_coding MGP_CASTEiJ_T0031942.1 MGP_CASTEiJ_G0018473.1 mouse_genomes_project 11 103416900 103440803 - MGP_CASTEiJ_P0031942 Kcnh4 protein_coding protein_coding MGP_CASTEiJ_T0031943.1 MGP_CASTEiJ_G0018473.1 mouse_genomes_project 11 103416906 103441005 - MGP_CASTEiJ_P0031943 Kcnh4 protein_coding protein_coding MGP_CASTEiJ_T0003014.1 MGP_CASTEiJ_G0002812.1 mouse_genomes_project 11 8942093 8943467 - Gm12000 antisense antisense MGP_CASTEiJ_T0009518.1 MGP_CASTEiJ_G0007706.1 mouse_genomes_project 11 121150678 121150788 + Mir6516 miRNA miRNA MGP_CASTEiJ_T0032073.1 MGP_CASTEiJ_G0018499.1 mouse_genomes_project 11 104047229 104051049 + MGP_CASTEiJ_P0032073 Psme3 protein_coding protein_coding MGP_CASTEiJ_T0032074.1 MGP_CASTEiJ_G0018499.1 mouse_genomes_project 11 104047436 104053199 + MGP_CASTEiJ_P0032074 Psme3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032075.1 MGP_CASTEiJ_G0018499.1 mouse_genomes_project 11 104047993 104051633 + MGP_CASTEiJ_P0032075 Psme3 protein_coding protein_coding MGP_CASTEiJ_T0032076.1 MGP_CASTEiJ_G0018499.1 mouse_genomes_project 11 104048039 104051065 + Psme3 protein_coding processed_transcript MGP_CASTEiJ_T0032077.1 MGP_CASTEiJ_G0018499.1 mouse_genomes_project 11 104050874 104053137 + Psme3 protein_coding processed_transcript MGP_CASTEiJ_T0032400.1 MGP_CASTEiJ_G0018559.1 mouse_genomes_project 11 105992204 106000290 - MGP_CASTEiJ_P0032400 Plcd3 protein_coding protein_coding MGP_CASTEiJ_T0032401.1 MGP_CASTEiJ_G0018559.1 mouse_genomes_project 11 105992204 106014062 - MGP_CASTEiJ_P0032401 Plcd3 protein_coding protein_coding MGP_CASTEiJ_T0032402.1 MGP_CASTEiJ_G0018559.1 mouse_genomes_project 11 105992485 105993641 - Plcd3 protein_coding processed_transcript MGP_CASTEiJ_T0032403.1 MGP_CASTEiJ_G0018559.1 mouse_genomes_project 11 105992706 106013973 - MGP_CASTEiJ_P0032403 Plcd3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032404.1 MGP_CASTEiJ_G0018559.1 mouse_genomes_project 11 106002544 106014022 - Plcd3 protein_coding processed_transcript MGP_CASTEiJ_T0032405.1 MGP_CASTEiJ_G0018559.1 mouse_genomes_project 11 106003717 106013995 - Plcd3 protein_coding processed_transcript MGP_CASTEiJ_T0027876.1 MGP_CASTEiJ_G0017453.1 mouse_genomes_project 11 30381512 30382366 - MGP_CASTEiJ_P0027876 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0006090.1 MGP_CASTEiJ_G0005100.1 mouse_genomes_project 11 62481937 62486367 + Gm27194 lincRNA lincRNA MGP_CASTEiJ_T0006050.1 MGP_CASTEiJ_G0005064.1 mouse_genomes_project 11 30920670 30947578 - Gm12111 lincRNA lincRNA MGP_CASTEiJ_T0029619.1 MGP_CASTEiJ_G0017887.1 mouse_genomes_project 11 70146250 70181530 + MGP_CASTEiJ_P0029619 Dlg4 protein_coding protein_coding MGP_CASTEiJ_T0029620.1 MGP_CASTEiJ_G0017887.1 mouse_genomes_project 11 70146406 70162202 + MGP_CASTEiJ_P0029620 Dlg4 protein_coding protein_coding MGP_CASTEiJ_T0029621.1 MGP_CASTEiJ_G0017887.1 mouse_genomes_project 11 70146439 70158007 + Dlg4 protein_coding processed_transcript MGP_CASTEiJ_T0029622.1 MGP_CASTEiJ_G0017887.1 mouse_genomes_project 11 70147629 70181530 + MGP_CASTEiJ_P0029622 Dlg4 protein_coding protein_coding MGP_CASTEiJ_T0029623.1 MGP_CASTEiJ_G0017887.1 mouse_genomes_project 11 70147893 70181530 + MGP_CASTEiJ_P0029623 Dlg4 protein_coding protein_coding MGP_CASTEiJ_T0029624.1 MGP_CASTEiJ_G0017887.1 mouse_genomes_project 11 70148029 70162098 + MGP_CASTEiJ_P0029624 Dlg4 protein_coding protein_coding MGP_CASTEiJ_T0029625.1 MGP_CASTEiJ_G0017887.1 mouse_genomes_project 11 70154372 70162080 + MGP_CASTEiJ_P0029625 Dlg4 protein_coding protein_coding MGP_CASTEiJ_T0029626.1 MGP_CASTEiJ_G0017887.1 mouse_genomes_project 11 70157762 70161940 + MGP_CASTEiJ_P0029626 Dlg4 protein_coding protein_coding MGP_CASTEiJ_T0029627.1 MGP_CASTEiJ_G0017887.1 mouse_genomes_project 11 70160682 70173403 + MGP_CASTEiJ_P0029627 Dlg4 protein_coding protein_coding MGP_CASTEiJ_T0029628.1 MGP_CASTEiJ_G0017887.1 mouse_genomes_project 11 70160963 70161859 + MGP_CASTEiJ_P0029628 Dlg4 protein_coding protein_coding MGP_CASTEiJ_T0029629.1 MGP_CASTEiJ_G0017887.1 mouse_genomes_project 11 70161584 70162683 + Dlg4 protein_coding retained_intron MGP_CASTEiJ_T0029630.1 MGP_CASTEiJ_G0017887.1 mouse_genomes_project 11 70174177 70180618 + MGP_CASTEiJ_P0029630 Dlg4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029631.1 MGP_CASTEiJ_G0017887.1 mouse_genomes_project 11 70180195 70180717 + Dlg4 protein_coding retained_intron MGP_CASTEiJ_T0012272.1 MGP_CASTEiJ_G0010435.1 mouse_genomes_project 11 59078332 59078984 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009465.1 MGP_CASTEiJ_G0007653.1 mouse_genomes_project 11 75702549 75702615 + Mir132 miRNA miRNA MGP_CASTEiJ_T0006026.1 MGP_CASTEiJ_G0005046.1 mouse_genomes_project 11 20732275 20746301 + 1700061J23Rik lincRNA lincRNA MGP_CASTEiJ_T0010983.1 MGP_CASTEiJ_G0009171.1 mouse_genomes_project 11 103457036 103457310 - Gm24358 misc_RNA misc_RNA MGP_CASTEiJ_T0099220.1 MGP_CASTEiJ_G0036133.1 mouse_genomes_project 11 20432592 20432693 + Gm24917 snRNA snRNA MGP_CASTEiJ_T0012212.1 MGP_CASTEiJ_G0010375.1 mouse_genomes_project 11 31456283 31456671 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031818.1 MGP_CASTEiJ_G0018431.1 mouse_genomes_project 11 102475888 102477279 + MGP_CASTEiJ_P0031818 protein_coding protein_coding MGP_CASTEiJ_T0100482.1 MGP_CASTEiJ_G0037395.1 mouse_genomes_project 11 120701974 120702049 + Snord1b snoRNA snoRNA MGP_CASTEiJ_T0012367.1 MGP_CASTEiJ_G0010530.1 mouse_genomes_project 11 98995437 98995824 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003092.1 MGP_CASTEiJ_G0002879.1 mouse_genomes_project 11 62701877 62702530 - Cdrt4os2 antisense antisense MGP_CASTEiJ_T0100474.1 MGP_CASTEiJ_G0037387.1 mouse_genomes_project 11 101532172 101532294 - Gm23451 snoRNA snoRNA MGP_CASTEiJ_T0031696.1 MGP_CASTEiJ_G0018378.1 mouse_genomes_project 11 101190428 101194295 + MGP_CASTEiJ_P0031696 Csf3 protein_coding protein_coding MGP_CASTEiJ_T0028827.1 MGP_CASTEiJ_G0017719.1 mouse_genomes_project 11 59461148 59473412 + MGP_CASTEiJ_P0028827 Med9 protein_coding protein_coding MGP_CASTEiJ_T0102017.1 MGP_CASTEiJ_G0038742.1 mouse_genomes_project 11 120787408 120818728 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0032322.1 MGP_CASTEiJ_G0018542.1 mouse_genomes_project 11 105300571 105318338 - MGP_CASTEiJ_P0032322 Itga2b protein_coding protein_coding MGP_CASTEiJ_T0032323.1 MGP_CASTEiJ_G0018542.1 mouse_genomes_project 11 105300578 105303504 - Itga2b protein_coding processed_transcript MGP_CASTEiJ_T0032324.1 MGP_CASTEiJ_G0018542.1 mouse_genomes_project 11 105303104 105304614 - Itga2b protein_coding processed_transcript MGP_CASTEiJ_T0032325.1 MGP_CASTEiJ_G0018542.1 mouse_genomes_project 11 105303210 105305855 - Itga2b protein_coding processed_transcript MGP_CASTEiJ_T0032326.1 MGP_CASTEiJ_G0018542.1 mouse_genomes_project 11 105303789 105315539 - Itga2b protein_coding processed_transcript MGP_CASTEiJ_T0032327.1 MGP_CASTEiJ_G0018542.1 mouse_genomes_project 11 105304493 105305649 - Itga2b protein_coding processed_transcript MGP_CASTEiJ_T0032328.1 MGP_CASTEiJ_G0018542.1 mouse_genomes_project 11 105304799 105308122 - Itga2b protein_coding processed_transcript MGP_CASTEiJ_T0032329.1 MGP_CASTEiJ_G0018542.1 mouse_genomes_project 11 105308498 105309224 - Itga2b protein_coding processed_transcript MGP_CASTEiJ_T0032330.1 MGP_CASTEiJ_G0018542.1 mouse_genomes_project 11 105313580 105315295 - Itga2b protein_coding processed_transcript MGP_CASTEiJ_T0032331.1 MGP_CASTEiJ_G0018542.1 mouse_genomes_project 11 105316139 105318577 - Itga2b protein_coding processed_transcript MGP_CASTEiJ_T0029660.1 MGP_CASTEiJ_G0017893.1 mouse_genomes_project 11 70362856 70367061 - MGP_CASTEiJ_P0029660 Slc16a13 protein_coding protein_coding MGP_CASTEiJ_T0029661.1 MGP_CASTEiJ_G0017893.1 mouse_genomes_project 11 70364807 70366875 - MGP_CASTEiJ_P0029661 Slc16a13 protein_coding protein_coding MGP_CASTEiJ_T0029662.1 MGP_CASTEiJ_G0017893.1 mouse_genomes_project 11 70365245 70367131 - MGP_CASTEiJ_P0029662 Slc16a13 protein_coding protein_coding MGP_CASTEiJ_T0029663.1 MGP_CASTEiJ_G0017893.1 mouse_genomes_project 11 70365358 70366851 - MGP_CASTEiJ_P0029663 Slc16a13 protein_coding protein_coding MGP_CASTEiJ_T0003034.1 MGP_CASTEiJ_G0002827.1 mouse_genomes_project 11 32436066 32444474 + 4930403D09Rik antisense antisense MGP_CASTEiJ_T0012376.1 MGP_CASTEiJ_G0010539.1 mouse_genomes_project 11 102310357 102310525 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027924.1 MGP_CASTEiJ_G0017470.1 mouse_genomes_project 11 32362195 32809626 - MGP_CASTEiJ_P0027924 Dock2 protein_coding protein_coding MGP_CASTEiJ_T0027925.1 MGP_CASTEiJ_G0017470.1 mouse_genomes_project 11 32366941 32368060 - Dock2 protein_coding retained_intron MGP_CASTEiJ_T0027926.1 MGP_CASTEiJ_G0017470.1 mouse_genomes_project 11 32409230 32809626 - MGP_CASTEiJ_P0027926 Dock2 protein_coding protein_coding MGP_CASTEiJ_T0027927.1 MGP_CASTEiJ_G0017470.1 mouse_genomes_project 11 32444009 32448968 - Dock2 protein_coding retained_intron MGP_CASTEiJ_T0027930.1 MGP_CASTEiJ_G0017470.1 mouse_genomes_project 11 32503069 32715733 - MGP_CASTEiJ_P0027930 Dock2 protein_coding protein_coding MGP_CASTEiJ_T0027931.1 MGP_CASTEiJ_G0017470.1 mouse_genomes_project 11 32581428 32809617 - Dock2 protein_coding retained_intron MGP_CASTEiJ_T0027932.1 MGP_CASTEiJ_G0017470.1 mouse_genomes_project 11 32581428 32809626 - MGP_CASTEiJ_P0027932 Dock2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028389.1 MGP_CASTEiJ_G0017594.1 mouse_genomes_project 11 50894204 50903400 + MGP_CASTEiJ_P0028389 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028390.1 MGP_CASTEiJ_G0017594.1 mouse_genomes_project 11 50894445 50902606 + MGP_CASTEiJ_P0028390 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031593.1 MGP_CASTEiJ_G0018352.1 mouse_genomes_project 11 100142787 100145052 + MGP_CASTEiJ_P0031593 B230217C12Rik protein_coding protein_coding MGP_CASTEiJ_T0031594.1 MGP_CASTEiJ_G0018352.1 mouse_genomes_project 11 100143297 100146121 + B230217C12Rik protein_coding lincRNA MGP_CASTEiJ_T0031595.1 MGP_CASTEiJ_G0018352.1 mouse_genomes_project 11 100143319 100145831 + B230217C12Rik protein_coding processed_transcript MGP_CASTEiJ_T0031596.1 MGP_CASTEiJ_G0018352.1 mouse_genomes_project 11 100143323 100145052 + B230217C12Rik protein_coding processed_transcript MGP_CASTEiJ_T0028897.1 MGP_CASTEiJ_G0017732.1 mouse_genomes_project 11 60282329 60282934 - Flii protein_coding retained_intron MGP_CASTEiJ_T0028898.1 MGP_CASTEiJ_G0017732.1 mouse_genomes_project 11 60282349 60295659 - MGP_CASTEiJ_P0028898 Flii protein_coding protein_coding MGP_CASTEiJ_T0028899.1 MGP_CASTEiJ_G0017732.1 mouse_genomes_project 11 60282352 60295613 - MGP_CASTEiJ_P0028899 Flii protein_coding unknown_likely_coding MGP_CASTEiJ_T0028900.1 MGP_CASTEiJ_G0017732.1 mouse_genomes_project 11 60287694 60288609 - Flii protein_coding retained_intron MGP_CASTEiJ_T0028901.1 MGP_CASTEiJ_G0017732.1 mouse_genomes_project 11 60292760 60295619 - Flii protein_coding retained_intron MGP_CASTEiJ_T0009513.1 MGP_CASTEiJ_G0007701.1 mouse_genomes_project 11 110879578 110879636 + Mir6932 miRNA miRNA MGP_CASTEiJ_T0010978.1 MGP_CASTEiJ_G0009166.1 mouse_genomes_project 11 87722271 87722374 + Gm25427 misc_RNA misc_RNA MGP_CASTEiJ_T0027650.1 MGP_CASTEiJ_G0017405.1 mouse_genomes_project 11 21138860 21215958 - MGP_CASTEiJ_P0027650 0610010F05Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027651.1 MGP_CASTEiJ_G0017405.1 mouse_genomes_project 11 21147624 21211427 - MGP_CASTEiJ_P0027651 0610010F05Rik protein_coding protein_coding MGP_CASTEiJ_T0027652.1 MGP_CASTEiJ_G0017405.1 mouse_genomes_project 11 21148161 21216040 - MGP_CASTEiJ_P0027652 0610010F05Rik protein_coding protein_coding MGP_CASTEiJ_T0027653.1 MGP_CASTEiJ_G0017405.1 mouse_genomes_project 11 21148161 21216048 - MGP_CASTEiJ_P0027653 0610010F05Rik protein_coding protein_coding MGP_CASTEiJ_T0027654.1 MGP_CASTEiJ_G0017405.1 mouse_genomes_project 11 21148276 21211427 - MGP_CASTEiJ_P0027654 0610010F05Rik protein_coding protein_coding MGP_CASTEiJ_T0027655.1 MGP_CASTEiJ_G0017405.1 mouse_genomes_project 11 21149854 21216086 - MGP_CASTEiJ_P0027655 0610010F05Rik protein_coding protein_coding MGP_CASTEiJ_T0027656.1 MGP_CASTEiJ_G0017405.1 mouse_genomes_project 11 21151002 21172577 - MGP_CASTEiJ_P0027656 0610010F05Rik protein_coding protein_coding MGP_CASTEiJ_T0027657.1 MGP_CASTEiJ_G0017405.1 mouse_genomes_project 11 21211276 21216040 - MGP_CASTEiJ_P0027657 0610010F05Rik protein_coding protein_coding MGP_CASTEiJ_T0003064.1 MGP_CASTEiJ_G0002855.1 mouse_genomes_project 11 54710300 54726100 + Gm12236 antisense antisense MGP_CASTEiJ_T0030032.1 MGP_CASTEiJ_G0017983.1 mouse_genomes_project 11 74283794 74368800 - MGP_CASTEiJ_P0030032 Olfr392 protein_coding protein_coding MGP_CASTEiJ_T0030033.1 MGP_CASTEiJ_G0017983.1 mouse_genomes_project 11 74284408 74368797 - MGP_CASTEiJ_P0030033 Olfr392 protein_coding protein_coding MGP_CASTEiJ_T0099282.1 MGP_CASTEiJ_G0036195.1 mouse_genomes_project 11 109359645 109359753 + Gm23645 snRNA snRNA MGP_CASTEiJ_T0028981.1 MGP_CASTEiJ_G0017749.1 mouse_genomes_project 11 61108360 61111819 + MGP_CASTEiJ_P0028981 Mfap4 protein_coding protein_coding MGP_CASTEiJ_T0028982.1 MGP_CASTEiJ_G0017749.1 mouse_genomes_project 11 61108390 61110994 + MGP_CASTEiJ_P0028982 Mfap4 protein_coding protein_coding MGP_CASTEiJ_T0028983.1 MGP_CASTEiJ_G0017749.1 mouse_genomes_project 11 61108420 61109875 + Mfap4 protein_coding processed_transcript MGP_CASTEiJ_T0028984.1 MGP_CASTEiJ_G0017749.1 mouse_genomes_project 11 61108445 61111819 + Mfap4 protein_coding processed_transcript MGP_CASTEiJ_T0033397.1 MGP_CASTEiJ_G0018755.1 mouse_genomes_project 11 121943399 121948074 + MGP_CASTEiJ_P0033397 Syngr2 protein_coding protein_coding MGP_CASTEiJ_T0033399.1 MGP_CASTEiJ_G0018755.1 mouse_genomes_project 11 121943446 121947228 + MGP_CASTEiJ_P0033399 Syngr2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033400.1 MGP_CASTEiJ_G0018755.1 mouse_genomes_project 11 121943449 121948065 + MGP_CASTEiJ_P0033400 Syngr2 protein_coding protein_coding MGP_CASTEiJ_T0033401.1 MGP_CASTEiJ_G0018755.1 mouse_genomes_project 11 121946011 121946871 + MGP_CASTEiJ_P0033401 Syngr2 protein_coding protein_coding MGP_CASTEiJ_T0033402.1 MGP_CASTEiJ_G0018755.1 mouse_genomes_project 11 121946743 121947165 + Syngr2 protein_coding retained_intron MGP_CASTEiJ_T0009485.1 MGP_CASTEiJ_G0007673.1 mouse_genomes_project 11 93790683 93790752 - Gm22702 miRNA miRNA MGP_CASTEiJ_T0032972.1 MGP_CASTEiJ_G0018681.1 mouse_genomes_project 11 119135795 119144742 - Fdxr protein_coding processed_transcript MGP_CASTEiJ_T0032973.1 MGP_CASTEiJ_G0018681.1 mouse_genomes_project 11 119135795 119144878 - MGP_CASTEiJ_P0032973 Fdxr protein_coding protein_coding MGP_CASTEiJ_T0032974.1 MGP_CASTEiJ_G0018681.1 mouse_genomes_project 11 119136119 119136790 - Fdxr protein_coding processed_transcript MGP_CASTEiJ_T0032975.1 MGP_CASTEiJ_G0018681.1 mouse_genomes_project 11 119139643 119144552 - Fdxr protein_coding processed_transcript MGP_CASTEiJ_T0016531.1 MGP_CASTEiJ_G0014528.1 mouse_genomes_project 11 110634502 110643747 + Gm11714 processed_transcript processed_transcript MGP_CASTEiJ_T0032626.1 MGP_CASTEiJ_G0018606.1 mouse_genomes_project 11 109376409 109389673 + MGP_CASTEiJ_P0032626 Tcam1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032627.1 MGP_CASTEiJ_G0018606.1 mouse_genomes_project 11 109376417 109393133 + MGP_CASTEiJ_P0032627 Tcam1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032628.1 MGP_CASTEiJ_G0018606.1 mouse_genomes_project 11 109376485 109390286 + MGP_CASTEiJ_P0032628 Tcam1 protein_coding protein_coding MGP_CASTEiJ_T0000803.1 MGP_CASTEiJ_G0000743.1 mouse_genomes_project 11 16187506 16190675 - TEC TEC MGP_CASTEiJ_T0031356.1 MGP_CASTEiJ_G0018295.1 mouse_genomes_project 11 97777277 97791275 + MGP_CASTEiJ_P0031356 Phb protein_coding protein_coding MGP_CASTEiJ_T0031357.1 MGP_CASTEiJ_G0018295.1 mouse_genomes_project 11 97777314 97781979 + Phb protein_coding processed_transcript MGP_CASTEiJ_T0031358.1 MGP_CASTEiJ_G0018295.1 mouse_genomes_project 11 97777324 97778928 + Phb protein_coding processed_transcript MGP_CASTEiJ_T0031359.1 MGP_CASTEiJ_G0018295.1 mouse_genomes_project 11 97777378 97790210 + MGP_CASTEiJ_P0031359 Phb protein_coding protein_coding MGP_CASTEiJ_T0031360.1 MGP_CASTEiJ_G0018295.1 mouse_genomes_project 11 97781786 97786236 + Phb protein_coding processed_transcript MGP_CASTEiJ_T0033017.1 MGP_CASTEiJ_G0018692.1 mouse_genomes_project 11 119344365 119357195 + MGP_CASTEiJ_P0033017 Slc16a5 protein_coding protein_coding MGP_CASTEiJ_T0033018.1 MGP_CASTEiJ_G0018692.1 mouse_genomes_project 11 119344397 119351622 + MGP_CASTEiJ_P0033018 Slc16a5 protein_coding protein_coding MGP_CASTEiJ_T0033019.1 MGP_CASTEiJ_G0018692.1 mouse_genomes_project 11 119344455 119351727 + Slc16a5 protein_coding processed_transcript MGP_CASTEiJ_T0033020.1 MGP_CASTEiJ_G0018692.1 mouse_genomes_project 11 119344500 119357167 + MGP_CASTEiJ_P0033020 Slc16a5 protein_coding protein_coding MGP_CASTEiJ_T0033021.1 MGP_CASTEiJ_G0018692.1 mouse_genomes_project 11 119345694 119357195 + Slc16a5 protein_coding processed_transcript MGP_CASTEiJ_T0033022.1 MGP_CASTEiJ_G0018692.1 mouse_genomes_project 11 119345709 119346889 + Slc16a5 protein_coding processed_transcript MGP_CASTEiJ_T0033023.1 MGP_CASTEiJ_G0018692.1 mouse_genomes_project 11 119345712 119351727 + Slc16a5 protein_coding processed_transcript MGP_CASTEiJ_T0033024.1 MGP_CASTEiJ_G0018692.1 mouse_genomes_project 11 119345718 119351671 + Slc16a5 protein_coding processed_transcript MGP_CASTEiJ_T0033025.1 MGP_CASTEiJ_G0018692.1 mouse_genomes_project 11 119346440 119356403 + Slc16a5 protein_coding retained_intron MGP_CASTEiJ_T0012401.1 MGP_CASTEiJ_G0010564.1 mouse_genomes_project 11 110523159 110523510 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099264.1 MGP_CASTEiJ_G0036177.1 mouse_genomes_project 11 89180684 89180784 - Gm25968 snRNA snRNA MGP_CASTEiJ_T0027428.1 MGP_CASTEiJ_G0017359.1 mouse_genomes_project 11 8533881 8714979 - MGP_CASTEiJ_P0027428 Zpbp protein_coding protein_coding MGP_CASTEiJ_T0009488.1 MGP_CASTEiJ_G0007676.1 mouse_genomes_project 11 98482803 98482913 + Mir10a miRNA miRNA MGP_CASTEiJ_T0012118.1 MGP_CASTEiJ_G0010281.1 mouse_genomes_project 11 2426059 2426310 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027913.1 MGP_CASTEiJ_G0017466.1 mouse_genomes_project 11 31717551 31956042 - MGP_CASTEiJ_P0027913 Kcnip1 protein_coding protein_coding MGP_CASTEiJ_T0027914.1 MGP_CASTEiJ_G0017466.1 mouse_genomes_project 11 31718002 31956108 - MGP_CASTEiJ_P0027914 Kcnip1 protein_coding protein_coding MGP_CASTEiJ_T0027915.1 MGP_CASTEiJ_G0017466.1 mouse_genomes_project 11 31718002 31956166 - MGP_CASTEiJ_P0027915 Kcnip1 protein_coding protein_coding MGP_CASTEiJ_T0027916.1 MGP_CASTEiJ_G0017466.1 mouse_genomes_project 11 31729423 32119126 - Kcnip1 protein_coding processed_transcript MGP_CASTEiJ_T0027917.1 MGP_CASTEiJ_G0017466.1 mouse_genomes_project 11 31729747 32118962 - Kcnip1 protein_coding processed_transcript MGP_CASTEiJ_T0012174.1 MGP_CASTEiJ_G0010337.1 mouse_genomes_project 11 18979389 18980070 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012247.1 MGP_CASTEiJ_G0010410.1 mouse_genomes_project 11 52414485 52414873 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099278.1 MGP_CASTEiJ_G0036191.1 mouse_genomes_project 11 104388379 104388570 + Gm23849 snRNA snRNA MGP_CASTEiJ_T0010967.1 MGP_CASTEiJ_G0009155.1 mouse_genomes_project 11 41299396 41299710 + Gm25543 misc_RNA misc_RNA MGP_CASTEiJ_T0009442.1 MGP_CASTEiJ_G0007630.1 mouse_genomes_project 11 64436169 64436315 - Gm24275 miRNA miRNA MGP_CASTEiJ_T0012214.1 MGP_CASTEiJ_G0010377.1 mouse_genomes_project 11 33355814 33356286 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028017.1 MGP_CASTEiJ_G0017492.1 mouse_genomes_project 11 41954412 42022029 + MGP_CASTEiJ_P0028017 Ccnjl protein_coding protein_coding MGP_CASTEiJ_T0028018.1 MGP_CASTEiJ_G0017492.1 mouse_genomes_project 11 41954874 41985509 + Ccnjl protein_coding processed_transcript MGP_CASTEiJ_T0099217.1 MGP_CASTEiJ_G0036130.1 mouse_genomes_project 11 14037637 14037744 - Gm25698 snRNA snRNA MGP_CASTEiJ_T0029684.1 MGP_CASTEiJ_G0017899.1 mouse_genomes_project 11 70469721 70474000 - MGP_CASTEiJ_P0029684 Alox12e protein_coding unknown_likely_coding MGP_CASTEiJ_T0029685.1 MGP_CASTEiJ_G0017899.1 mouse_genomes_project 11 70469723 70476740 - MGP_CASTEiJ_P0029685 Alox12e protein_coding protein_coding MGP_CASTEiJ_T0029686.1 MGP_CASTEiJ_G0017899.1 mouse_genomes_project 11 70474088 70475690 - Alox12e protein_coding retained_intron MGP_CASTEiJ_T0029687.1 MGP_CASTEiJ_G0017899.1 mouse_genomes_project 11 70475106 70475967 - Alox12e protein_coding retained_intron MGP_CASTEiJ_T0029688.1 MGP_CASTEiJ_G0017899.1 mouse_genomes_project 11 70475167 70476559 - Alox12e protein_coding retained_intron MGP_CASTEiJ_T0012392.1 MGP_CASTEiJ_G0010555.1 mouse_genomes_project 11 107605562 107605852 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102009.1 MGP_CASTEiJ_G0038734.1 mouse_genomes_project 11 102260093 102260216 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0028653.1 MGP_CASTEiJ_G0017660.1 mouse_genomes_project 11 57460802 57509540 - MGP_CASTEiJ_P0028653 Gemin5 protein_coding protein_coding MGP_CASTEiJ_T0028654.1 MGP_CASTEiJ_G0017660.1 mouse_genomes_project 11 57462090 57509540 - MGP_CASTEiJ_P0028654 Gemin5 protein_coding protein_coding MGP_CASTEiJ_T0028655.1 MGP_CASTEiJ_G0017660.1 mouse_genomes_project 11 57462090 57509540 - MGP_CASTEiJ_P0028655 Gemin5 protein_coding protein_coding MGP_CASTEiJ_T0028656.1 MGP_CASTEiJ_G0017660.1 mouse_genomes_project 11 57475453 57509493 - MGP_CASTEiJ_P0028656 Gemin5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028657.1 MGP_CASTEiJ_G0017660.1 mouse_genomes_project 11 57477722 57480274 - Gemin5 protein_coding processed_transcript MGP_CASTEiJ_T0028658.1 MGP_CASTEiJ_G0017660.1 mouse_genomes_project 11 57495747 57500611 - MGP_CASTEiJ_P0028658 Gemin5 protein_coding protein_coding MGP_CASTEiJ_T0012112.1 MGP_CASTEiJ_G0010275.1 mouse_genomes_project 11 471079 471917 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029238.1 MGP_CASTEiJ_G0017801.1 mouse_genomes_project 11 67629294 67726648 - MGP_CASTEiJ_P0029238 Glp2r protein_coding protein_coding MGP_CASTEiJ_T0029241.1 MGP_CASTEiJ_G0017801.1 mouse_genomes_project 11 67674251 67739974 - MGP_CASTEiJ_P0029241 Glp2r protein_coding protein_coding MGP_CASTEiJ_T0031083.1 MGP_CASTEiJ_G0018233.1 mouse_genomes_project 11 89844544 89845748 + MGP_CASTEiJ_P0031083 Ccdc182 protein_coding protein_coding MGP_CASTEiJ_T0031204.1 MGP_CASTEiJ_G0018260.1 mouse_genomes_project 11 96095455 96099454 + MGP_CASTEiJ_P0031204 Tob1 protein_coding protein_coding MGP_CASTEiJ_T0032151.1 MGP_CASTEiJ_G0018516.1 mouse_genomes_project 11 104495561 104498340 + Dhx8 protein_coding retained_intron MGP_CASTEiJ_T0032152.1 MGP_CASTEiJ_G0018516.1 mouse_genomes_project 11 104495592 104530760 + MGP_CASTEiJ_P0032152 Dhx8 protein_coding protein_coding MGP_CASTEiJ_T0032153.1 MGP_CASTEiJ_G0018516.1 mouse_genomes_project 11 104495649 104530352 + MGP_CASTEiJ_P0032153 Dhx8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032154.1 MGP_CASTEiJ_G0018516.1 mouse_genomes_project 11 104495671 104497083 + Dhx8 protein_coding retained_intron MGP_CASTEiJ_T0032155.1 MGP_CASTEiJ_G0018516.1 mouse_genomes_project 11 104515329 104516742 + Dhx8 protein_coding retained_intron MGP_CASTEiJ_T0098823.1 MGP_CASTEiJ_G0035752.1 mouse_genomes_project 11 111659257 111660309 + Gm11656 sense_intronic sense_intronic MGP_CASTEiJ_T0098824.1 MGP_CASTEiJ_G0035752.1 mouse_genomes_project 11 111659273 111664324 + Gm11656 sense_intronic sense_intronic MGP_CASTEiJ_T0009472.1 MGP_CASTEiJ_G0007660.1 mouse_genomes_project 11 78810047 78810119 - Mir451b miRNA miRNA MGP_CASTEiJ_T0032789.1 MGP_CASTEiJ_G0018638.1 mouse_genomes_project 11 112798502 112823086 - MGP_CASTEiJ_P0032789 Slc16a6 protein_coding protein_coding MGP_CASTEiJ_T0032790.1 MGP_CASTEiJ_G0018638.1 mouse_genomes_project 11 112801733 112822080 - MGP_CASTEiJ_P0032790 Slc16a6 protein_coding protein_coding MGP_CASTEiJ_T0032791.1 MGP_CASTEiJ_G0018638.1 mouse_genomes_project 11 112809606 112822173 - MGP_CASTEiJ_P0032791 Slc16a6 protein_coding protein_coding MGP_CASTEiJ_T0032792.1 MGP_CASTEiJ_G0018638.1 mouse_genomes_project 11 112816252 112822687 - Slc16a6 protein_coding processed_transcript MGP_CASTEiJ_T0032694.1 MGP_CASTEiJ_G0018620.1 mouse_genomes_project 11 110160869 110172377 - MGP_CASTEiJ_P0032694 Gm10184 protein_coding protein_coding MGP_CASTEiJ_T0032695.1 MGP_CASTEiJ_G0018620.1 mouse_genomes_project 11 110160869 110172276 - MGP_CASTEiJ_P0032695 Gm10184 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032696.1 MGP_CASTEiJ_G0018620.1 mouse_genomes_project 11 110164727 110165723 - Gm10184 protein_coding retained_intron MGP_CASTEiJ_T0032697.1 MGP_CASTEiJ_G0018620.1 mouse_genomes_project 11 110169038 110172205 - MGP_CASTEiJ_P0032697 Gm10184 protein_coding protein_coding MGP_CASTEiJ_T0012122.1 MGP_CASTEiJ_G0010285.1 mouse_genomes_project 11 3219252 3219596 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029691.1 MGP_CASTEiJ_G0017901.1 mouse_genomes_project 11 70557451 70574300 - MGP_CASTEiJ_P0029691 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029692.1 MGP_CASTEiJ_G0017901.1 mouse_genomes_project 11 70557461 70574480 - MGP_CASTEiJ_P0029692 protein_coding protein_coding MGP_CASTEiJ_T0029693.1 MGP_CASTEiJ_G0017901.1 mouse_genomes_project 11 70567076 70574483 - MGP_CASTEiJ_P0029693 protein_coding protein_coding MGP_CASTEiJ_T0003226.1 MGP_CASTEiJ_G0002985.1 mouse_genomes_project 11 113169154 113174753 + Gm11683 antisense antisense MGP_CASTEiJ_T0028460.1 MGP_CASTEiJ_G0017612.1 mouse_genomes_project 11 52553107 52556868 - MGP_CASTEiJ_P0028460 Sowaha protein_coding protein_coding MGP_CASTEiJ_T0033598.1 MGP_CASTEiJ_G0018793.1 mouse_genomes_project 11 124377245 124385397 - MGP_CASTEiJ_P0033598 Enthd2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033599.1 MGP_CASTEiJ_G0018793.1 mouse_genomes_project 11 124377252 124385408 - MGP_CASTEiJ_P0033599 Enthd2 protein_coding protein_coding MGP_CASTEiJ_T0033600.1 MGP_CASTEiJ_G0018793.1 mouse_genomes_project 11 124377252 124385408 - MGP_CASTEiJ_P0033600 Enthd2 protein_coding protein_coding MGP_CASTEiJ_T0033601.1 MGP_CASTEiJ_G0018793.1 mouse_genomes_project 11 124377252 124385408 - MGP_CASTEiJ_P0033601 Enthd2 protein_coding protein_coding MGP_CASTEiJ_T0033602.1 MGP_CASTEiJ_G0018793.1 mouse_genomes_project 11 124380881 124384062 - Enthd2 protein_coding processed_transcript MGP_CASTEiJ_T0033603.1 MGP_CASTEiJ_G0018793.1 mouse_genomes_project 11 124382234 124383947 - Enthd2 protein_coding processed_transcript MGP_CASTEiJ_T0033604.1 MGP_CASTEiJ_G0018793.1 mouse_genomes_project 11 124383585 124385377 - Enthd2 protein_coding processed_transcript MGP_CASTEiJ_T0012270.1 MGP_CASTEiJ_G0010433.1 mouse_genomes_project 11 58962341 58964150 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012152.1 MGP_CASTEiJ_G0010315.1 mouse_genomes_project 11 14972279 14972964 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016471.1 MGP_CASTEiJ_G0014491.1 mouse_genomes_project 11 66068954 66214972 + Gm12296 processed_transcript processed_transcript MGP_CASTEiJ_T0012353.1 MGP_CASTEiJ_G0010516.1 mouse_genomes_project 11 92225980 92226521 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012204.1 MGP_CASTEiJ_G0010367.1 mouse_genomes_project 11 28759586 28759948 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027065.1 MGP_CASTEiJ_G0017278.1 mouse_genomes_project 11 491685 535132 + MGP_CASTEiJ_P0027065 Morc2a protein_coding unknown_likely_coding MGP_CASTEiJ_T0027066.1 MGP_CASTEiJ_G0017278.1 mouse_genomes_project 11 492282 536213 + MGP_CASTEiJ_P0027066 Morc2a protein_coding protein_coding MGP_CASTEiJ_T0027067.1 MGP_CASTEiJ_G0017278.1 mouse_genomes_project 11 492547 514355 + MGP_CASTEiJ_P0027067 Morc2a protein_coding protein_coding MGP_CASTEiJ_T0027068.1 MGP_CASTEiJ_G0017278.1 mouse_genomes_project 11 493041 536318 + MGP_CASTEiJ_P0027068 Morc2a protein_coding protein_coding MGP_CASTEiJ_T0027069.1 MGP_CASTEiJ_G0017278.1 mouse_genomes_project 11 524835 529743 + Morc2a protein_coding processed_transcript MGP_CASTEiJ_T0027070.1 MGP_CASTEiJ_G0017278.1 mouse_genomes_project 11 525195 526080 + Morc2a protein_coding processed_transcript MGP_CASTEiJ_T0027071.1 MGP_CASTEiJ_G0017278.1 mouse_genomes_project 11 525290 529525 + Morc2a protein_coding processed_transcript MGP_CASTEiJ_T0031944.1 MGP_CASTEiJ_G0018474.1 mouse_genomes_project 11 103442149 103444009 - MGP_CASTEiJ_P0031944 Hcrt protein_coding protein_coding MGP_CASTEiJ_T0031945.1 MGP_CASTEiJ_G0018474.1 mouse_genomes_project 11 103442771 103444012 - MGP_CASTEiJ_P0031945 Hcrt protein_coding protein_coding MGP_CASTEiJ_T0033432.1 MGP_CASTEiJ_G0018764.1 mouse_genomes_project 11 122166575 122286539 - MGP_CASTEiJ_P0033432 Dnah17 protein_coding protein_coding MGP_CASTEiJ_T0033433.1 MGP_CASTEiJ_G0018764.1 mouse_genomes_project 11 122166575 122286539 - MGP_CASTEiJ_P0033433 Dnah17 protein_coding protein_coding MGP_CASTEiJ_T0033434.1 MGP_CASTEiJ_G0018764.1 mouse_genomes_project 11 122167930 122256664 - MGP_CASTEiJ_P0033434 Dnah17 protein_coding protein_coding MGP_CASTEiJ_T0033435.1 MGP_CASTEiJ_G0018764.1 mouse_genomes_project 11 122235653 122244789 - MGP_CASTEiJ_P0033435 Dnah17 protein_coding protein_coding MGP_CASTEiJ_T0033436.1 MGP_CASTEiJ_G0018764.1 mouse_genomes_project 11 122265626 122283039 - MGP_CASTEiJ_P0033436 Dnah17 protein_coding protein_coding MGP_CASTEiJ_T0030038.1 MGP_CASTEiJ_G0017987.1 mouse_genomes_project 11 74400781 74401865 + MGP_CASTEiJ_P0030038 Olfr23 protein_coding protein_coding MGP_CASTEiJ_T0027297.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2938777 3033981 - MGP_CASTEiJ_P0027297 Camk2b protein_coding protein_coding MGP_CASTEiJ_T0027298.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2938794 2953286 - Camk2b protein_coding processed_transcript MGP_CASTEiJ_T0027299.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2938798 3033796 - MGP_CASTEiJ_P0027299 Camk2b protein_coding protein_coding MGP_CASTEiJ_T0027300.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2938798 3033981 - MGP_CASTEiJ_P0027300 Camk2b protein_coding protein_coding MGP_CASTEiJ_T0027301.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2940673 3033796 - MGP_CASTEiJ_P0027301 Camk2b protein_coding protein_coding MGP_CASTEiJ_T0027302.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2940772 3033819 - MGP_CASTEiJ_P0027302 Camk2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0027303.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2940772 3033819 - MGP_CASTEiJ_P0027303 Camk2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0027304.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2940774 3033815 - MGP_CASTEiJ_P0027304 Camk2b protein_coding protein_coding MGP_CASTEiJ_T0027305.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2940777 3033975 - MGP_CASTEiJ_P0027305 Camk2b protein_coding protein_coding MGP_CASTEiJ_T0027306.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2940777 3033778 - MGP_CASTEiJ_P0027306 Camk2b protein_coding protein_coding MGP_CASTEiJ_T0027307.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2940785 3033845 - MGP_CASTEiJ_P0027307 Camk2b protein_coding protein_coding MGP_CASTEiJ_T0027308.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2940840 3033771 - MGP_CASTEiJ_P0027308 Camk2b protein_coding protein_coding MGP_CASTEiJ_T0027309.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2941328 3033803 - MGP_CASTEiJ_P0027309 Camk2b protein_coding protein_coding MGP_CASTEiJ_T0027310.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2957248 3033771 - Camk2b protein_coding processed_transcript MGP_CASTEiJ_T0027311.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2959568 2970259 - Camk2b protein_coding processed_transcript MGP_CASTEiJ_T0027312.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2962006 3035730 - Camk2b protein_coding processed_transcript MGP_CASTEiJ_T0027313.1 MGP_CASTEiJ_G0017330.1 mouse_genomes_project 11 2975657 3033891 - Camk2b protein_coding processed_transcript MGP_CASTEiJ_T0099258.1 MGP_CASTEiJ_G0036171.1 mouse_genomes_project 11 86493952 86494059 + Gm23506 snRNA snRNA MGP_CASTEiJ_T0100423.1 MGP_CASTEiJ_G0037336.1 mouse_genomes_project 11 20410538 20410640 + Gm23772 snoRNA snoRNA MGP_CASTEiJ_T0016460.1 MGP_CASTEiJ_G0014486.1 mouse_genomes_project 11 58412448 58424710 - 2310058D17Rik processed_transcript processed_transcript MGP_CASTEiJ_T0030069.1 MGP_CASTEiJ_G0018003.1 mouse_genomes_project 11 75129024 75136089 + Cluh protein_coding processed_transcript MGP_CASTEiJ_T0030070.1 MGP_CASTEiJ_G0018003.1 mouse_genomes_project 11 75129044 75149583 + MGP_CASTEiJ_P0030070 Cluh protein_coding protein_coding MGP_CASTEiJ_T0030071.1 MGP_CASTEiJ_G0018003.1 mouse_genomes_project 11 75129044 75150522 + MGP_CASTEiJ_P0030071 Cluh protein_coding protein_coding MGP_CASTEiJ_T0030072.1 MGP_CASTEiJ_G0018003.1 mouse_genomes_project 11 75129069 75150522 + Cluh protein_coding retained_intron MGP_CASTEiJ_T0030073.1 MGP_CASTEiJ_G0018003.1 mouse_genomes_project 11 75129087 75149552 + MGP_CASTEiJ_P0030073 Cluh protein_coding unknown_likely_coding MGP_CASTEiJ_T0030074.1 MGP_CASTEiJ_G0018003.1 mouse_genomes_project 11 75129090 75169421 + MGP_CASTEiJ_P0030074 Cluh protein_coding unknown_likely_coding MGP_CASTEiJ_T0030075.1 MGP_CASTEiJ_G0018003.1 mouse_genomes_project 11 75129359 75136877 + Cluh protein_coding processed_transcript MGP_CASTEiJ_T0030076.1 MGP_CASTEiJ_G0018003.1 mouse_genomes_project 11 75144157 75144982 + Cluh protein_coding retained_intron MGP_CASTEiJ_T0016510.1 MGP_CASTEiJ_G0014512.1 mouse_genomes_project 11 99135653 99175330 + D030028A08Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016511.1 MGP_CASTEiJ_G0014512.1 mouse_genomes_project 11 99166041 99188815 + D030028A08Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016512.1 MGP_CASTEiJ_G0014512.1 mouse_genomes_project 11 99166065 99181873 + D030028A08Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016513.1 MGP_CASTEiJ_G0014512.1 mouse_genomes_project 11 99166188 99185698 + D030028A08Rik processed_transcript processed_transcript MGP_CASTEiJ_T0012315.1 MGP_CASTEiJ_G0010478.1 mouse_genomes_project 11 75591990 75592389 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012427.1 MGP_CASTEiJ_G0010590.1 mouse_genomes_project 11 125146993 125150610 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100461.1 MGP_CASTEiJ_G0037374.1 mouse_genomes_project 11 78923798 78923869 - Snord4a snoRNA snoRNA MGP_CASTEiJ_T0029816.1 MGP_CASTEiJ_G0017926.1 mouse_genomes_project 11 71176764 71205147 - Nup88 protein_coding retained_intron MGP_CASTEiJ_T0029817.1 MGP_CASTEiJ_G0017926.1 mouse_genomes_project 11 71176778 71205161 - MGP_CASTEiJ_P0029817 Nup88 protein_coding protein_coding MGP_CASTEiJ_T0029818.1 MGP_CASTEiJ_G0017926.1 mouse_genomes_project 11 71176783 71180677 - Nup88 protein_coding retained_intron MGP_CASTEiJ_T0029819.1 MGP_CASTEiJ_G0017926.1 mouse_genomes_project 11 71176788 71205150 - MGP_CASTEiJ_P0029819 Nup88 protein_coding protein_coding MGP_CASTEiJ_T0029820.1 MGP_CASTEiJ_G0017926.1 mouse_genomes_project 11 71176808 71205142 - MGP_CASTEiJ_P0029820 Nup88 protein_coding protein_coding MGP_CASTEiJ_T0029821.1 MGP_CASTEiJ_G0017926.1 mouse_genomes_project 11 71176882 71205068 - MGP_CASTEiJ_P0029821 Nup88 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029822.1 MGP_CASTEiJ_G0017926.1 mouse_genomes_project 11 71177586 71178808 - Nup88 protein_coding retained_intron MGP_CASTEiJ_T0029823.1 MGP_CASTEiJ_G0017926.1 mouse_genomes_project 11 71177645 71178196 - Nup88 protein_coding retained_intron MGP_CASTEiJ_T0029824.1 MGP_CASTEiJ_G0017926.1 mouse_genomes_project 11 71177687 71178445 - Nup88 protein_coding retained_intron MGP_CASTEiJ_T0029825.1 MGP_CASTEiJ_G0017926.1 mouse_genomes_project 11 71178120 71178742 - Nup88 protein_coding retained_intron MGP_CASTEiJ_T0029826.1 MGP_CASTEiJ_G0017926.1 mouse_genomes_project 11 71178390 71183107 - Nup88 protein_coding retained_intron MGP_CASTEiJ_T0029827.1 MGP_CASTEiJ_G0017926.1 mouse_genomes_project 11 71183860 71205149 - Nup88 protein_coding retained_intron MGP_CASTEiJ_T0029828.1 MGP_CASTEiJ_G0017926.1 mouse_genomes_project 11 71188749 71190750 - Nup88 protein_coding retained_intron MGP_CASTEiJ_T0029829.1 MGP_CASTEiJ_G0017926.1 mouse_genomes_project 11 71189447 71191201 - Nup88 protein_coding retained_intron MGP_CASTEiJ_T0029830.1 MGP_CASTEiJ_G0017926.1 mouse_genomes_project 11 71190487 71196077 - Nup88 protein_coding retained_intron MGP_CASTEiJ_T0030278.1 MGP_CASTEiJ_G0018046.1 mouse_genomes_project 11 77407753 77472552 - MGP_CASTEiJ_P0030278 Cpd protein_coding protein_coding MGP_CASTEiJ_T0030279.1 MGP_CASTEiJ_G0018046.1 mouse_genomes_project 11 77415192 77420093 - Cpd protein_coding retained_intron MGP_CASTEiJ_T0030280.1 MGP_CASTEiJ_G0018046.1 mouse_genomes_project 11 77435779 77438841 - Cpd protein_coding retained_intron MGP_CASTEiJ_T0027579.1 MGP_CASTEiJ_G0017392.1 mouse_genomes_project 11 19511624 19811723 - MGP_CASTEiJ_P0027579 Ehbp1 protein_coding protein_coding MGP_CASTEiJ_T0027580.1 MGP_CASTEiJ_G0017392.1 mouse_genomes_project 11 19511624 19812680 - MGP_CASTEiJ_P0027580 Ehbp1 protein_coding protein_coding MGP_CASTEiJ_T0027581.1 MGP_CASTEiJ_G0017392.1 mouse_genomes_project 11 19511626 19812680 - MGP_CASTEiJ_P0027581 Ehbp1 protein_coding protein_coding MGP_CASTEiJ_T0027582.1 MGP_CASTEiJ_G0017392.1 mouse_genomes_project 11 19512487 19812664 - MGP_CASTEiJ_P0027582 Ehbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027583.1 MGP_CASTEiJ_G0017392.1 mouse_genomes_project 11 19512487 19812664 - MGP_CASTEiJ_P0027583 Ehbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027584.1 MGP_CASTEiJ_G0017392.1 mouse_genomes_project 11 19512487 19812664 - MGP_CASTEiJ_P0027584 Ehbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027585.1 MGP_CASTEiJ_G0017392.1 mouse_genomes_project 11 19512487 19812664 - MGP_CASTEiJ_P0027585 Ehbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027586.1 MGP_CASTEiJ_G0017392.1 mouse_genomes_project 11 19512487 19812664 - MGP_CASTEiJ_P0027586 Ehbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027587.1 MGP_CASTEiJ_G0017392.1 mouse_genomes_project 11 19512487 19812664 - MGP_CASTEiJ_P0027587 Ehbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027588.1 MGP_CASTEiJ_G0017392.1 mouse_genomes_project 11 19522710 19812514 - MGP_CASTEiJ_P0027588 Ehbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027589.1 MGP_CASTEiJ_G0017392.1 mouse_genomes_project 11 19622490 19688949 - Ehbp1 protein_coding processed_transcript MGP_CASTEiJ_T0027590.1 MGP_CASTEiJ_G0017392.1 mouse_genomes_project 11 19662497 19811757 - MGP_CASTEiJ_P0027590 Ehbp1 protein_coding protein_coding MGP_CASTEiJ_T0027591.1 MGP_CASTEiJ_G0017392.1 mouse_genomes_project 11 19684971 19687346 - Ehbp1 protein_coding processed_transcript MGP_CASTEiJ_T0027592.1 MGP_CASTEiJ_G0017392.1 mouse_genomes_project 11 19750879 19868713 - Ehbp1 protein_coding processed_transcript MGP_CASTEiJ_T0031830.1 MGP_CASTEiJ_G0018443.1 mouse_genomes_project 11 102707758 102712337 - Krt32 protein_coding processed_transcript MGP_CASTEiJ_T0031831.1 MGP_CASTEiJ_G0018443.1 mouse_genomes_project 11 102707767 102715120 - MGP_CASTEiJ_P0031831 Krt32 protein_coding protein_coding MGP_CASTEiJ_T0030386.1 MGP_CASTEiJ_G0018064.1 mouse_genomes_project 11 78591474 78606148 - MGP_CASTEiJ_P0030386 Pipox protein_coding unknown_likely_coding MGP_CASTEiJ_T0030387.1 MGP_CASTEiJ_G0018064.1 mouse_genomes_project 11 78591475 78606117 - MGP_CASTEiJ_P0030387 Pipox protein_coding protein_coding MGP_CASTEiJ_T0030388.1 MGP_CASTEiJ_G0018064.1 mouse_genomes_project 11 78591919 78593723 - Pipox protein_coding retained_intron MGP_CASTEiJ_T0030389.1 MGP_CASTEiJ_G0018064.1 mouse_genomes_project 11 78593655 78595563 - Pipox protein_coding processed_transcript MGP_CASTEiJ_T0031058.1 MGP_CASTEiJ_G0018228.1 mouse_genomes_project 11 89507247 89511733 - MGP_CASTEiJ_P0031058 Dynll2 protein_coding protein_coding MGP_CASTEiJ_T0031059.1 MGP_CASTEiJ_G0018228.1 mouse_genomes_project 11 89507248 89515239 - MGP_CASTEiJ_P0031059 Dynll2 protein_coding protein_coding MGP_CASTEiJ_T0031060.1 MGP_CASTEiJ_G0018228.1 mouse_genomes_project 11 89507248 89514290 - MGP_CASTEiJ_P0031060 Dynll2 protein_coding protein_coding MGP_CASTEiJ_T0031061.1 MGP_CASTEiJ_G0018228.1 mouse_genomes_project 11 89507877 89515062 - MGP_CASTEiJ_P0031061 Dynll2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012193.1 MGP_CASTEiJ_G0010356.1 mouse_genomes_project 11 26787010 26787853 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010973.1 MGP_CASTEiJ_G0009161.1 mouse_genomes_project 11 67311864 67312164 + Gm26476 misc_RNA misc_RNA MGP_CASTEiJ_T0012243.1 MGP_CASTEiJ_G0010406.1 mouse_genomes_project 11 49795932 49799287 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029345.1 MGP_CASTEiJ_G0017824.1 mouse_genomes_project 11 69107784 69109646 + MGP_CASTEiJ_P0029345 Borcs6 protein_coding protein_coding MGP_CASTEiJ_T0003190.1 MGP_CASTEiJ_G0002954.1 mouse_genomes_project 11 104350439 104355993 - antisense antisense MGP_CASTEiJ_T0027281.1 MGP_CASTEiJ_G0017325.1 mouse_genomes_project 11 2820266 2832564 + MGP_CASTEiJ_P0027281 Aebp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027282.1 MGP_CASTEiJ_G0017325.1 mouse_genomes_project 11 2822559 2832564 + MGP_CASTEiJ_P0027282 Aebp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027283.1 MGP_CASTEiJ_G0017325.1 mouse_genomes_project 11 2822559 2832564 + MGP_CASTEiJ_P0027283 Aebp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027284.1 MGP_CASTEiJ_G0017325.1 mouse_genomes_project 11 2828074 2832559 + MGP_CASTEiJ_P0027284 Aebp1 protein_coding protein_coding MGP_CASTEiJ_T0027285.1 MGP_CASTEiJ_G0017325.1 mouse_genomes_project 11 2829621 2830615 + Aebp1 protein_coding processed_transcript MGP_CASTEiJ_T0028008.1 MGP_CASTEiJ_G0017490.1 mouse_genomes_project 11 41862894 41867462 + MGP_CASTEiJ_P0028008 Slu7 protein_coding protein_coding MGP_CASTEiJ_T0028009.1 MGP_CASTEiJ_G0017490.1 mouse_genomes_project 11 41862894 41875282 + MGP_CASTEiJ_P0028009 Slu7 protein_coding protein_coding MGP_CASTEiJ_T0028010.1 MGP_CASTEiJ_G0017490.1 mouse_genomes_project 11 41862909 41877920 + MGP_CASTEiJ_P0028010 Slu7 protein_coding protein_coding MGP_CASTEiJ_T0028011.1 MGP_CASTEiJ_G0017490.1 mouse_genomes_project 11 41866492 41877920 + MGP_CASTEiJ_P0028011 Slu7 protein_coding protein_coding MGP_CASTEiJ_T0028012.1 MGP_CASTEiJ_G0017490.1 mouse_genomes_project 11 41866524 41869155 + Slu7 protein_coding processed_transcript MGP_CASTEiJ_T0028013.1 MGP_CASTEiJ_G0017490.1 mouse_genomes_project 11 41871309 41872511 + Slu7 protein_coding processed_transcript MGP_CASTEiJ_T0030907.1 MGP_CASTEiJ_G0018193.1 mouse_genomes_project 11 87216113 87221090 - MGP_CASTEiJ_P0030907 Gm11444 protein_coding protein_coding MGP_CASTEiJ_T0003186.1 MGP_CASTEiJ_G0002950.1 mouse_genomes_project 11 103358987 103369072 + Dhx58os antisense antisense MGP_CASTEiJ_T0033685.1 MGP_CASTEiJ_G0018808.1 mouse_genomes_project 11 124810714 124815204 + MGP_CASTEiJ_P0033685 Mrpl12 protein_coding protein_coding MGP_CASTEiJ_T0033686.1 MGP_CASTEiJ_G0018808.1 mouse_genomes_project 11 124811128 124814596 + Mrpl12 protein_coding processed_transcript MGP_CASTEiJ_T0033654.1 MGP_CASTEiJ_G0018803.1 mouse_genomes_project 11 124766914 124774217 - Pde6g protein_coding processed_transcript MGP_CASTEiJ_T0033655.1 MGP_CASTEiJ_G0018803.1 mouse_genomes_project 11 124766933 124774235 - Pde6g protein_coding processed_transcript MGP_CASTEiJ_T0033656.1 MGP_CASTEiJ_G0018803.1 mouse_genomes_project 11 124766935 124774283 - MGP_CASTEiJ_P0033656 Pde6g protein_coding protein_coding MGP_CASTEiJ_T0006198.1 MGP_CASTEiJ_G0005178.1 mouse_genomes_project 11 118180375 118221434 - 4932435O22Rik lincRNA lincRNA MGP_CASTEiJ_T0006199.1 MGP_CASTEiJ_G0005178.1 mouse_genomes_project 11 118180613 118190643 - 4932435O22Rik lincRNA lincRNA MGP_CASTEiJ_T0012250.1 MGP_CASTEiJ_G0010413.1 mouse_genomes_project 11 52825596 52825949 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028239.1 MGP_CASTEiJ_G0017557.1 mouse_genomes_project 11 48969896 48993744 + MGP_CASTEiJ_P0028239 Mgat4b protein_coding protein_coding MGP_CASTEiJ_T0028240.1 MGP_CASTEiJ_G0017557.1 mouse_genomes_project 11 48988023 48997730 + MGP_CASTEiJ_P0028240 Mgat4b protein_coding protein_coding MGP_CASTEiJ_T0028241.1 MGP_CASTEiJ_G0017557.1 mouse_genomes_project 11 48993384 48997730 + MGP_CASTEiJ_P0028241 Mgat4b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028242.1 MGP_CASTEiJ_G0017557.1 mouse_genomes_project 11 48993392 48994407 + Mgat4b protein_coding retained_intron MGP_CASTEiJ_T0028243.1 MGP_CASTEiJ_G0017557.1 mouse_genomes_project 11 48996649 48997544 + Mgat4b protein_coding retained_intron MGP_CASTEiJ_T0016475.1 MGP_CASTEiJ_G0014494.1 mouse_genomes_project 11 69403465 69405643 + processed_transcript processed_transcript MGP_CASTEiJ_T0016476.1 MGP_CASTEiJ_G0014494.1 mouse_genomes_project 11 69403813 69404380 + processed_transcript processed_transcript MGP_CASTEiJ_T0003128.1 MGP_CASTEiJ_G0002908.1 mouse_genomes_project 11 81060491 81080491 - Adap2os antisense antisense MGP_CASTEiJ_T0031827.1 MGP_CASTEiJ_G0018440.1 mouse_genomes_project 11 102646188 102653892 - MGP_CASTEiJ_P0031827 Krt33b protein_coding protein_coding MGP_CASTEiJ_T0030490.1 MGP_CASTEiJ_G0018083.1 mouse_genomes_project 11 79086288 79107003 + MGP_CASTEiJ_P0030490 Pigs protein_coding protein_coding MGP_CASTEiJ_T0028203.1 MGP_CASTEiJ_G0017551.1 mouse_genomes_project 11 48587904 48626747 + MGP_CASTEiJ_P0028203 Mapk9 protein_coding protein_coding MGP_CASTEiJ_T0028204.1 MGP_CASTEiJ_G0017551.1 mouse_genomes_project 11 48587904 48626747 + MGP_CASTEiJ_P0028204 Mapk9 protein_coding protein_coding MGP_CASTEiJ_T0028205.1 MGP_CASTEiJ_G0017551.1 mouse_genomes_project 11 48587904 48626747 + MGP_CASTEiJ_P0028205 Mapk9 protein_coding protein_coding MGP_CASTEiJ_T0028206.1 MGP_CASTEiJ_G0017551.1 mouse_genomes_project 11 48587924 48616121 + Mapk9 protein_coding processed_transcript MGP_CASTEiJ_T0028207.1 MGP_CASTEiJ_G0017551.1 mouse_genomes_project 11 48588046 48613904 + Mapk9 protein_coding processed_transcript MGP_CASTEiJ_T0028208.1 MGP_CASTEiJ_G0017551.1 mouse_genomes_project 11 48588047 48624223 + MGP_CASTEiJ_P0028208 Mapk9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028209.1 MGP_CASTEiJ_G0017551.1 mouse_genomes_project 11 48595574 48626737 + MGP_CASTEiJ_P0028209 Mapk9 protein_coding protein_coding MGP_CASTEiJ_T0028210.1 MGP_CASTEiJ_G0017551.1 mouse_genomes_project 11 48595591 48614814 + Mapk9 protein_coding processed_transcript MGP_CASTEiJ_T0028211.1 MGP_CASTEiJ_G0017551.1 mouse_genomes_project 11 48595618 48623636 + MGP_CASTEiJ_P0028211 Mapk9 protein_coding protein_coding MGP_CASTEiJ_T0028212.1 MGP_CASTEiJ_G0017551.1 mouse_genomes_project 11 48595618 48623636 + MGP_CASTEiJ_P0028212 Mapk9 protein_coding protein_coding MGP_CASTEiJ_T0031055.1 MGP_CASTEiJ_G0018226.1 mouse_genomes_project 11 89399778 89400714 - MGP_CASTEiJ_P0031055 protein_coding protein_coding MGP_CASTEiJ_T0029978.1 MGP_CASTEiJ_G0017958.1 mouse_genomes_project 11 73451667 73495577 + MGP_CASTEiJ_P0029978 Ncbp3 protein_coding protein_coding MGP_CASTEiJ_T0029979.1 MGP_CASTEiJ_G0017958.1 mouse_genomes_project 11 73451754 73464318 + Ncbp3 protein_coding retained_intron MGP_CASTEiJ_T0029980.1 MGP_CASTEiJ_G0017958.1 mouse_genomes_project 11 73451757 73460698 + Ncbp3 protein_coding retained_intron MGP_CASTEiJ_T0029975.1 MGP_CASTEiJ_G0017957.1 mouse_genomes_project 11 73421446 73445926 + Camkk1 protein_coding retained_intron MGP_CASTEiJ_T0029976.1 MGP_CASTEiJ_G0017957.1 mouse_genomes_project 11 73421481 73445937 + MGP_CASTEiJ_P0029976 Camkk1 protein_coding protein_coding MGP_CASTEiJ_T0029977.1 MGP_CASTEiJ_G0017957.1 mouse_genomes_project 11 73429023 73444157 + MGP_CASTEiJ_P0029977 Camkk1 protein_coding protein_coding MGP_CASTEiJ_T0003079.1 MGP_CASTEiJ_G0002867.1 mouse_genomes_project 11 59773347 59774452 + Gm12265 antisense antisense MGP_CASTEiJ_T0031469.1 MGP_CASTEiJ_G0018324.1 mouse_genomes_project 11 99147182 99148567 + Prr15l protein_coding processed_transcript MGP_CASTEiJ_T0031470.1 MGP_CASTEiJ_G0018324.1 mouse_genomes_project 11 99148376 99156961 + MGP_CASTEiJ_P0031470 Prr15l protein_coding protein_coding MGP_CASTEiJ_T0031471.1 MGP_CASTEiJ_G0018324.1 mouse_genomes_project 11 99148398 99159664 + MGP_CASTEiJ_P0031471 Prr15l protein_coding protein_coding MGP_CASTEiJ_T0031472.1 MGP_CASTEiJ_G0018324.1 mouse_genomes_project 11 99148468 99156956 + MGP_CASTEiJ_P0031472 Prr15l protein_coding protein_coding MGP_CASTEiJ_T0031473.1 MGP_CASTEiJ_G0018324.1 mouse_genomes_project 11 99152723 99156596 + MGP_CASTEiJ_P0031473 Prr15l protein_coding protein_coding MGP_CASTEiJ_T0032629.1 MGP_CASTEiJ_G0018607.1 mouse_genomes_project 11 109398718 109400310 - MGP_CASTEiJ_P0032629 Gh protein_coding protein_coding MGP_CASTEiJ_T0030662.1 MGP_CASTEiJ_G0018126.1 mouse_genomes_project 11 81806929 81819244 + MGP_CASTEiJ_P0030662 Spaca3 protein_coding protein_coding MGP_CASTEiJ_T0030663.1 MGP_CASTEiJ_G0018126.1 mouse_genomes_project 11 81806936 81819248 + MGP_CASTEiJ_P0030663 Spaca3 protein_coding protein_coding MGP_CASTEiJ_T0033052.1 MGP_CASTEiJ_G0018698.1 mouse_genomes_project 11 119487716 119509068 - MGP_CASTEiJ_P0033052 Gga3 protein_coding protein_coding MGP_CASTEiJ_T0033053.1 MGP_CASTEiJ_G0018698.1 mouse_genomes_project 11 119487716 119509068 - MGP_CASTEiJ_P0033053 Gga3 protein_coding protein_coding MGP_CASTEiJ_T0033054.1 MGP_CASTEiJ_G0018698.1 mouse_genomes_project 11 119487716 119509068 - MGP_CASTEiJ_P0033054 Gga3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033055.1 MGP_CASTEiJ_G0018698.1 mouse_genomes_project 11 119487825 119494542 - Gga3 protein_coding processed_transcript MGP_CASTEiJ_T0033056.1 MGP_CASTEiJ_G0018698.1 mouse_genomes_project 11 119489165 119492517 - Gga3 protein_coding processed_transcript MGP_CASTEiJ_T0033057.1 MGP_CASTEiJ_G0018698.1 mouse_genomes_project 11 119489248 119508901 - Gga3 protein_coding processed_transcript MGP_CASTEiJ_T0033058.1 MGP_CASTEiJ_G0018698.1 mouse_genomes_project 11 119491046 119491489 - Gga3 protein_coding processed_transcript MGP_CASTEiJ_T0033059.1 MGP_CASTEiJ_G0018698.1 mouse_genomes_project 11 119491397 119508893 - Gga3 protein_coding processed_transcript MGP_CASTEiJ_T0033060.1 MGP_CASTEiJ_G0018698.1 mouse_genomes_project 11 119491938 119508905 - Gga3 protein_coding processed_transcript MGP_CASTEiJ_T0033061.1 MGP_CASTEiJ_G0018698.1 mouse_genomes_project 11 119496662 119508910 - MGP_CASTEiJ_P0033061 Gga3 protein_coding protein_coding MGP_CASTEiJ_T0033062.1 MGP_CASTEiJ_G0018698.1 mouse_genomes_project 11 119497519 119508741 - Gga3 protein_coding processed_transcript MGP_CASTEiJ_T0033063.1 MGP_CASTEiJ_G0018698.1 mouse_genomes_project 11 119497537 119508897 - Gga3 protein_coding processed_transcript MGP_CASTEiJ_T0027455.1 MGP_CASTEiJ_G0017364.1 mouse_genomes_project 11 9198346 9259996 - MGP_CASTEiJ_P0027455 Grb10 protein_coding protein_coding MGP_CASTEiJ_T0027456.1 MGP_CASTEiJ_G0017364.1 mouse_genomes_project 11 9201379 9296946 - MGP_CASTEiJ_P0027456 Grb10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027457.1 MGP_CASTEiJ_G0017364.1 mouse_genomes_project 11 9204542 9206441 - Grb10 protein_coding processed_transcript MGP_CASTEiJ_T0027458.1 MGP_CASTEiJ_G0017364.1 mouse_genomes_project 11 9212725 9214160 - Grb10 protein_coding processed_transcript MGP_CASTEiJ_T0027459.1 MGP_CASTEiJ_G0017364.1 mouse_genomes_project 11 9217544 9223966 - Grb10 protein_coding processed_transcript MGP_CASTEiJ_T0027460.1 MGP_CASTEiJ_G0017364.1 mouse_genomes_project 11 9222682 9309843 - MGP_CASTEiJ_P0027460 Grb10 protein_coding protein_coding MGP_CASTEiJ_T0027461.1 MGP_CASTEiJ_G0017364.1 mouse_genomes_project 11 9235527 9296875 - MGP_CASTEiJ_P0027461 Grb10 protein_coding protein_coding MGP_CASTEiJ_T0027462.1 MGP_CASTEiJ_G0017364.1 mouse_genomes_project 11 9235621 9297282 - MGP_CASTEiJ_P0027462 Grb10 protein_coding protein_coding MGP_CASTEiJ_T0030819.1 MGP_CASTEiJ_G0018176.1 mouse_genomes_project 11 85392608 85487281 + MGP_CASTEiJ_P0030819 Acaca protein_coding protein_coding MGP_CASTEiJ_T0030820.1 MGP_CASTEiJ_G0018176.1 mouse_genomes_project 11 85392636 85396187 + Acaca protein_coding processed_transcript MGP_CASTEiJ_T0030824.1 MGP_CASTEiJ_G0018176.1 mouse_genomes_project 11 85441146 85680895 + MGP_CASTEiJ_P0030824 Acaca protein_coding protein_coding MGP_CASTEiJ_T0030825.1 MGP_CASTEiJ_G0018176.1 mouse_genomes_project 11 85441378 85508354 + Acaca protein_coding retained_intron MGP_CASTEiJ_T0030826.1 MGP_CASTEiJ_G0018176.1 mouse_genomes_project 11 85450940 85504469 + MGP_CASTEiJ_P0030826 Acaca protein_coding protein_coding MGP_CASTEiJ_T0030827.1 MGP_CASTEiJ_G0018176.1 mouse_genomes_project 11 85450940 85487186 + MGP_CASTEiJ_P0030827 Acaca protein_coding protein_coding MGP_CASTEiJ_T0030828.1 MGP_CASTEiJ_G0018176.1 mouse_genomes_project 11 85450967 85487175 + MGP_CASTEiJ_P0030828 Acaca protein_coding protein_coding MGP_CASTEiJ_T0030829.1 MGP_CASTEiJ_G0018176.1 mouse_genomes_project 11 85469408 85680889 + MGP_CASTEiJ_P0030829 Acaca protein_coding protein_coding MGP_CASTEiJ_T0030830.1 MGP_CASTEiJ_G0018176.1 mouse_genomes_project 11 85555159 85587701 + MGP_CASTEiJ_P0030830 Acaca protein_coding protein_coding MGP_CASTEiJ_T0100410.1 MGP_CASTEiJ_G0037323.1 mouse_genomes_project 11 1957002 1957099 + Gm24958 snoRNA snoRNA MGP_CASTEiJ_T0003225.1 MGP_CASTEiJ_G0002984.1 mouse_genomes_project 11 113140704 113142781 + Gm11684 antisense antisense MGP_CASTEiJ_T0028667.1 MGP_CASTEiJ_G0017664.1 mouse_genomes_project 11 57628866 57648277 + MGP_CASTEiJ_P0028667 protein_coding protein_coding MGP_CASTEiJ_T0029516.1 MGP_CASTEiJ_G0017867.1 mouse_genomes_project 11 69934584 69947046 - MGP_CASTEiJ_P0029516 Nlgn2 protein_coding protein_coding MGP_CASTEiJ_T0029517.1 MGP_CASTEiJ_G0017867.1 mouse_genomes_project 11 69934584 69950253 - MGP_CASTEiJ_P0029517 Nlgn2 protein_coding protein_coding MGP_CASTEiJ_T0029518.1 MGP_CASTEiJ_G0017867.1 mouse_genomes_project 11 69939953 69946456 - MGP_CASTEiJ_P0029518 Nlgn2 protein_coding protein_coding MGP_CASTEiJ_T0029519.1 MGP_CASTEiJ_G0017867.1 mouse_genomes_project 11 69940258 69940774 - Nlgn2 protein_coding retained_intron MGP_CASTEiJ_T0099265.1 MGP_CASTEiJ_G0036178.1 mouse_genomes_project 11 90519859 90519966 + Gm23507 snRNA snRNA MGP_CASTEiJ_T0027847.1 MGP_CASTEiJ_G0017447.1 mouse_genomes_project 11 30177621 30183161 + MGP_CASTEiJ_P0027847 Mpg protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027848.1 MGP_CASTEiJ_G0017447.1 mouse_genomes_project 11 30177627 30183841 + MGP_CASTEiJ_P0027848 Mpg protein_coding protein_coding MGP_CASTEiJ_T0027849.1 MGP_CASTEiJ_G0017447.1 mouse_genomes_project 11 30177646 30179514 + Mpg protein_coding retained_intron MGP_CASTEiJ_T0027850.1 MGP_CASTEiJ_G0017447.1 mouse_genomes_project 11 30177655 30182386 + MGP_CASTEiJ_P0027850 Mpg protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028641.1 MGP_CASTEiJ_G0017656.1 mouse_genomes_project 11 57125154 57129266 - MGP_CASTEiJ_P0028641 Hand1 protein_coding protein_coding MGP_CASTEiJ_T0028642.1 MGP_CASTEiJ_G0017656.1 mouse_genomes_project 11 57125156 57128597 - MGP_CASTEiJ_P0028642 Hand1 protein_coding protein_coding MGP_CASTEiJ_T0028643.1 MGP_CASTEiJ_G0017656.1 mouse_genomes_project 11 57128143 57129266 - MGP_CASTEiJ_P0028643 Hand1 protein_coding protein_coding MGP_CASTEiJ_T0006188.1 MGP_CASTEiJ_G0005172.1 mouse_genomes_project 11 116433294 116434388 + 4933434M16Rik lincRNA lincRNA MGP_CASTEiJ_T0006189.1 MGP_CASTEiJ_G0005172.1 mouse_genomes_project 11 116433319 116440561 + 4933434M16Rik lincRNA lincRNA MGP_CASTEiJ_T0031916.1 MGP_CASTEiJ_G0018467.1 mouse_genomes_project 11 103298014 103304547 + MGP_CASTEiJ_P0031916 Nkiras2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031917.1 MGP_CASTEiJ_G0018467.1 mouse_genomes_project 11 103301100 103303099 + Nkiras2 protein_coding processed_transcript MGP_CASTEiJ_T0031918.1 MGP_CASTEiJ_G0018467.1 mouse_genomes_project 11 103301128 103304807 + Nkiras2 protein_coding processed_transcript MGP_CASTEiJ_T0031919.1 MGP_CASTEiJ_G0018467.1 mouse_genomes_project 11 103301146 103305826 + MGP_CASTEiJ_P0031919 Nkiras2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031920.1 MGP_CASTEiJ_G0018467.1 mouse_genomes_project 11 103301191 103304338 + MGP_CASTEiJ_P0031920 Nkiras2 protein_coding protein_coding MGP_CASTEiJ_T0030737.1 MGP_CASTEiJ_G0018149.1 mouse_genomes_project 11 84261533 84267356 + MGP_CASTEiJ_P0030737 Slfn1 protein_coding protein_coding MGP_CASTEiJ_T0006040.1 MGP_CASTEiJ_G0005056.1 mouse_genomes_project 11 26484848 26497882 + 2810471M01Rik lincRNA lincRNA MGP_CASTEiJ_T0016427.1 MGP_CASTEiJ_G0014468.1 mouse_genomes_project 11 14246109 14264927 - Eldr processed_transcript processed_transcript MGP_CASTEiJ_T0016428.1 MGP_CASTEiJ_G0014468.1 mouse_genomes_project 11 14246114 14264946 - Eldr processed_transcript processed_transcript MGP_CASTEiJ_T0016429.1 MGP_CASTEiJ_G0014468.1 mouse_genomes_project 11 14247533 14264870 - Eldr processed_transcript processed_transcript MGP_CASTEiJ_T0016430.1 MGP_CASTEiJ_G0014468.1 mouse_genomes_project 11 14247797 14264928 - Eldr processed_transcript processed_transcript MGP_CASTEiJ_T0016431.1 MGP_CASTEiJ_G0014468.1 mouse_genomes_project 11 14247840 14265126 - Eldr processed_transcript processed_transcript MGP_CASTEiJ_T0016432.1 MGP_CASTEiJ_G0014468.1 mouse_genomes_project 11 14247913 14264910 - Eldr processed_transcript processed_transcript MGP_CASTEiJ_T0016433.1 MGP_CASTEiJ_G0014468.1 mouse_genomes_project 11 14251395 14264921 - Eldr processed_transcript processed_transcript MGP_CASTEiJ_T0100480.1 MGP_CASTEiJ_G0037393.1 mouse_genomes_project 11 119648731 119648866 + Gm23699 snoRNA snoRNA MGP_CASTEiJ_T0016488.1 MGP_CASTEiJ_G0014502.1 mouse_genomes_project 11 84025757 84032043 - Unc45bos processed_transcript processed_transcript MGP_CASTEiJ_T0099277.1 MGP_CASTEiJ_G0036190.1 mouse_genomes_project 11 104362908 104363678 + Gm26316 snRNA snRNA MGP_CASTEiJ_T0029981.1 MGP_CASTEiJ_G0017959.1 mouse_genomes_project 11 73496842 73542498 + MGP_CASTEiJ_P0029981 Itgae protein_coding protein_coding MGP_CASTEiJ_T0029982.1 MGP_CASTEiJ_G0017959.1 mouse_genomes_project 11 73496842 73558952 + MGP_CASTEiJ_P0029982 Itgae protein_coding protein_coding MGP_CASTEiJ_T0010965.1 MGP_CASTEiJ_G0009153.1 mouse_genomes_project 11 14882733 14883057 + Gm23959 misc_RNA misc_RNA MGP_CASTEiJ_T0028637.1 MGP_CASTEiJ_G0017654.1 mouse_genomes_project 11 56905681 57070095 + MGP_CASTEiJ_P0028637 Galnt10 protein_coding protein_coding MGP_CASTEiJ_T0028638.1 MGP_CASTEiJ_G0017654.1 mouse_genomes_project 11 56905704 56999166 + MGP_CASTEiJ_P0028638 Galnt10 protein_coding protein_coding MGP_CASTEiJ_T0012354.1 MGP_CASTEiJ_G0010517.1 mouse_genomes_project 11 92250091 92250754 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030630.1 MGP_CASTEiJ_G0018120.1 mouse_genomes_project 11 81280626 81299754 - MGP_CASTEiJ_P0030630 5730455P16Rik protein_coding protein_coding MGP_CASTEiJ_T0030631.1 MGP_CASTEiJ_G0018120.1 mouse_genomes_project 11 81280627 81299773 - MGP_CASTEiJ_P0030631 5730455P16Rik protein_coding protein_coding MGP_CASTEiJ_T0030632.1 MGP_CASTEiJ_G0018120.1 mouse_genomes_project 11 81292195 81299773 - MGP_CASTEiJ_P0030632 5730455P16Rik protein_coding protein_coding MGP_CASTEiJ_T0100477.1 MGP_CASTEiJ_G0037390.1 mouse_genomes_project 11 109627288 109627358 + Snord104 snoRNA snoRNA MGP_CASTEiJ_T0031413.1 MGP_CASTEiJ_G0018314.1 mouse_genomes_project 11 98483905 98489079 + MGP_CASTEiJ_P0031413 Hoxb4 protein_coding protein_coding MGP_CASTEiJ_T0030035.1 MGP_CASTEiJ_G0017985.1 mouse_genomes_project 11 74346033 74346966 - MGP_CASTEiJ_P0030035 Olfr394 protein_coding protein_coding MGP_CASTEiJ_T0003129.1 MGP_CASTEiJ_G0002909.1 mouse_genomes_project 11 81797692 81806865 - 4930507D10Rik antisense antisense MGP_CASTEiJ_T0003261.1 MGP_CASTEiJ_G0003012.1 mouse_genomes_project 11 125409131 125431948 + Gm11775 antisense antisense MGP_CASTEiJ_T0012329.1 MGP_CASTEiJ_G0010492.1 mouse_genomes_project 11 80308491 80308998 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012411.1 MGP_CASTEiJ_G0010574.1 mouse_genomes_project 11 117465990 117466495 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029513.1 MGP_CASTEiJ_G0017864.1 mouse_genomes_project 11 69913469 69915490 - MGP_CASTEiJ_P0029513 Tmem102 protein_coding protein_coding MGP_CASTEiJ_T0006059.1 MGP_CASTEiJ_G0005073.1 mouse_genomes_project 11 41519363 41530976 - Gm12145 lincRNA lincRNA MGP_CASTEiJ_T0012184.1 MGP_CASTEiJ_G0010347.1 mouse_genomes_project 11 24101888 24102916 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006042.1 MGP_CASTEiJ_G0005058.1 mouse_genomes_project 11 27421140 27423009 + Gm12088 lincRNA lincRNA MGP_CASTEiJ_T0030968.1 MGP_CASTEiJ_G0018208.1 mouse_genomes_project 11 88538810 88559332 - MGP_CASTEiJ_P0030968 Prr11 protein_coding protein_coding MGP_CASTEiJ_T0028447.1 MGP_CASTEiJ_G0017608.1 mouse_genomes_project 11 52504883 52510553 + Gdf9 protein_coding processed_transcript MGP_CASTEiJ_T0028448.1 MGP_CASTEiJ_G0017608.1 mouse_genomes_project 11 52506701 52507640 + Gdf9 protein_coding processed_transcript MGP_CASTEiJ_T0028449.1 MGP_CASTEiJ_G0017608.1 mouse_genomes_project 11 52507158 52511555 + MGP_CASTEiJ_P0028449 Gdf9 protein_coding protein_coding MGP_CASTEiJ_T0028190.1 MGP_CASTEiJ_G0017546.1 mouse_genomes_project 11 48212960 48213715 + MGP_CASTEiJ_P0028190 Olfr1383 protein_coding protein_coding MGP_CASTEiJ_T0012153.1 MGP_CASTEiJ_G0010316.1 mouse_genomes_project 11 15528522 15529054 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031544.1 MGP_CASTEiJ_G0018342.1 mouse_genomes_project 11 99908695 99911009 - MGP_CASTEiJ_P0031544 E130012A19Rik protein_coding protein_coding MGP_CASTEiJ_T0030419.1 MGP_CASTEiJ_G0018070.1 mouse_genomes_project 11 78831656 78898901 + MGP_CASTEiJ_P0030419 Fam222b protein_coding protein_coding MGP_CASTEiJ_T0030420.1 MGP_CASTEiJ_G0018070.1 mouse_genomes_project 11 78831704 78898275 + MGP_CASTEiJ_P0030420 Fam222b protein_coding protein_coding MGP_CASTEiJ_T0030421.1 MGP_CASTEiJ_G0018070.1 mouse_genomes_project 11 78853758 78898901 + MGP_CASTEiJ_P0030421 Fam222b protein_coding protein_coding MGP_CASTEiJ_T0028751.1 MGP_CASTEiJ_G0017699.1 mouse_genomes_project 11 58613255 58621649 - MGP_CASTEiJ_P0028751 Iba57 protein_coding protein_coding MGP_CASTEiJ_T0028752.1 MGP_CASTEiJ_G0017699.1 mouse_genomes_project 11 58619029 58621224 - MGP_CASTEiJ_P0028752 Iba57 protein_coding protein_coding MGP_CASTEiJ_T0028753.1 MGP_CASTEiJ_G0017699.1 mouse_genomes_project 11 58619261 58621607 - MGP_CASTEiJ_P0028753 Iba57 protein_coding protein_coding MGP_CASTEiJ_T0030657.1 MGP_CASTEiJ_G0018124.1 mouse_genomes_project 11 81409996 81724207 - MGP_CASTEiJ_P0030657 Myo1d protein_coding protein_coding MGP_CASTEiJ_T0030658.1 MGP_CASTEiJ_G0018124.1 mouse_genomes_project 11 81491599 81653391 - MGP_CASTEiJ_P0030658 Myo1d protein_coding unknown_likely_coding MGP_CASTEiJ_T0030659.1 MGP_CASTEiJ_G0018124.1 mouse_genomes_project 11 81521471 81724207 - MGP_CASTEiJ_P0030659 Myo1d protein_coding protein_coding MGP_CASTEiJ_T0030660.1 MGP_CASTEiJ_G0018124.1 mouse_genomes_project 11 81617504 81724185 - Myo1d protein_coding retained_intron MGP_CASTEiJ_T0027883.1 MGP_CASTEiJ_G0017457.1 mouse_genomes_project 11 30632486 30744359 + MGP_CASTEiJ_P0027883 Fbxw11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027884.1 MGP_CASTEiJ_G0017457.1 mouse_genomes_project 11 30632486 30745109 + MGP_CASTEiJ_P0027884 Fbxw11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027885.1 MGP_CASTEiJ_G0017457.1 mouse_genomes_project 11 30632486 30744359 + MGP_CASTEiJ_P0027885 Fbxw11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027886.1 MGP_CASTEiJ_G0017457.1 mouse_genomes_project 11 30632486 30744359 + MGP_CASTEiJ_P0027886 Fbxw11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027887.1 MGP_CASTEiJ_G0017457.1 mouse_genomes_project 11 30632546 30644223 + Fbxw11 protein_coding processed_transcript MGP_CASTEiJ_T0027888.1 MGP_CASTEiJ_G0017457.1 mouse_genomes_project 11 30632628 30747314 + MGP_CASTEiJ_P0027888 Fbxw11 protein_coding protein_coding MGP_CASTEiJ_T0027889.1 MGP_CASTEiJ_G0017457.1 mouse_genomes_project 11 30632637 30747341 + MGP_CASTEiJ_P0027889 Fbxw11 protein_coding protein_coding MGP_CASTEiJ_T0027890.1 MGP_CASTEiJ_G0017457.1 mouse_genomes_project 11 30632666 30716625 + MGP_CASTEiJ_P0027890 Fbxw11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029242.1 MGP_CASTEiJ_G0017803.1 mouse_genomes_project 11 67743404 67758435 + MGP_CASTEiJ_P0029242 Gsg1l2 protein_coding protein_coding MGP_CASTEiJ_T0029243.1 MGP_CASTEiJ_G0017803.1 mouse_genomes_project 11 67749779 67753934 + MGP_CASTEiJ_P0029243 Gsg1l2 protein_coding protein_coding MGP_CASTEiJ_T0030741.1 MGP_CASTEiJ_G0018153.1 mouse_genomes_project 11 84463839 84468364 - MGP_CASTEiJ_P0030741 Pex12 protein_coding protein_coding MGP_CASTEiJ_T0030742.1 MGP_CASTEiJ_G0018153.1 mouse_genomes_project 11 84464460 84468282 - MGP_CASTEiJ_P0030742 Pex12 protein_coding protein_coding MGP_CASTEiJ_T0030743.1 MGP_CASTEiJ_G0018153.1 mouse_genomes_project 11 84464460 84468329 - MGP_CASTEiJ_P0030743 Pex12 protein_coding protein_coding MGP_CASTEiJ_T0030744.1 MGP_CASTEiJ_G0018153.1 mouse_genomes_project 11 84464461 84468284 - MGP_CASTEiJ_P0030744 Pex12 protein_coding protein_coding MGP_CASTEiJ_T0030745.1 MGP_CASTEiJ_G0018153.1 mouse_genomes_project 11 84467293 84468325 - Pex12 protein_coding processed_transcript MGP_CASTEiJ_T0030746.1 MGP_CASTEiJ_G0018153.1 mouse_genomes_project 11 84467419 84472954 - MGP_CASTEiJ_P0030746 Pex12 protein_coding protein_coding MGP_CASTEiJ_T0030747.1 MGP_CASTEiJ_G0018153.1 mouse_genomes_project 11 84467718 84468345 - MGP_CASTEiJ_P0030747 Pex12 protein_coding protein_coding MGP_CASTEiJ_T0006187.1 MGP_CASTEiJ_G0005171.1 mouse_genomes_project 11 116396493 116404862 - Gm11681 lincRNA lincRNA MGP_CASTEiJ_T0028195.1 MGP_CASTEiJ_G0017549.1 mouse_genomes_project 11 48396163 48440115 - MGP_CASTEiJ_P0028195 Cnot6 protein_coding protein_coding MGP_CASTEiJ_T0028196.1 MGP_CASTEiJ_G0017549.1 mouse_genomes_project 11 48399361 48430025 - Cnot6 protein_coding processed_transcript MGP_CASTEiJ_T0028197.1 MGP_CASTEiJ_G0017549.1 mouse_genomes_project 11 48399375 48440102 - MGP_CASTEiJ_P0028197 Cnot6 protein_coding protein_coding MGP_CASTEiJ_T0028198.1 MGP_CASTEiJ_G0017549.1 mouse_genomes_project 11 48402046 48404564 - Cnot6 protein_coding processed_transcript MGP_CASTEiJ_T0028199.1 MGP_CASTEiJ_G0017549.1 mouse_genomes_project 11 48405315 48406869 - Cnot6 protein_coding processed_transcript MGP_CASTEiJ_T0032808.1 MGP_CASTEiJ_G0018642.1 mouse_genomes_project 11 113036452 113093829 - MGP_CASTEiJ_P0032808 Fam20a protein_coding unknown_likely_coding MGP_CASTEiJ_T0032809.1 MGP_CASTEiJ_G0018642.1 mouse_genomes_project 11 113036453 113094275 - MGP_CASTEiJ_P0032809 Fam20a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032810.1 MGP_CASTEiJ_G0018642.1 mouse_genomes_project 11 113039634 113094252 - MGP_CASTEiJ_P0032810 Fam20a protein_coding protein_coding MGP_CASTEiJ_T0032811.1 MGP_CASTEiJ_G0018642.1 mouse_genomes_project 11 113040182 113043168 - Fam20a protein_coding retained_intron MGP_CASTEiJ_T0032812.1 MGP_CASTEiJ_G0018642.1 mouse_genomes_project 11 113041362 113049735 - Fam20a protein_coding retained_intron MGP_CASTEiJ_T0028059.1 MGP_CASTEiJ_G0017503.1 mouse_genomes_project 11 44456622 44504270 - MGP_CASTEiJ_P0028059 Lsm11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028060.1 MGP_CASTEiJ_G0017503.1 mouse_genomes_project 11 44488427 44504223 - MGP_CASTEiJ_P0028060 Lsm11 protein_coding protein_coding MGP_CASTEiJ_T0028061.1 MGP_CASTEiJ_G0017503.1 mouse_genomes_project 11 44491217 44504223 - MGP_CASTEiJ_P0028061 Lsm11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032106.1 MGP_CASTEiJ_G0018510.1 mouse_genomes_project 11 104208714 104215310 + Rnd2 protein_coding processed_transcript MGP_CASTEiJ_T0032107.1 MGP_CASTEiJ_G0018510.1 mouse_genomes_project 11 104209200 104214562 + Rnd2 protein_coding processed_transcript MGP_CASTEiJ_T0032108.1 MGP_CASTEiJ_G0018510.1 mouse_genomes_project 11 104211863 104215310 + MGP_CASTEiJ_P0032108 Rnd2 protein_coding protein_coding MGP_CASTEiJ_T0027497.1 MGP_CASTEiJ_G0017372.1 mouse_genomes_project 11 14478209 14525106 + MGP_CASTEiJ_P0027497 Ppp3r1 protein_coding protein_coding MGP_CASTEiJ_T0027499.1 MGP_CASTEiJ_G0017372.1 mouse_genomes_project 11 14517193 14519854 + Ppp3r1 protein_coding processed_transcript MGP_CASTEiJ_T0012425.1 MGP_CASTEiJ_G0010588.1 mouse_genomes_project 11 122364861 122365294 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029887.1 MGP_CASTEiJ_G0017937.1 mouse_genomes_project 11 72397965 72495634 - MGP_CASTEiJ_P0029887 Pitpnm3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029888.1 MGP_CASTEiJ_G0017937.1 mouse_genomes_project 11 72397965 72495634 - MGP_CASTEiJ_P0029888 Pitpnm3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029889.1 MGP_CASTEiJ_G0017937.1 mouse_genomes_project 11 72397969 72495665 - MGP_CASTEiJ_P0029889 Pitpnm3 protein_coding protein_coding MGP_CASTEiJ_T0029890.1 MGP_CASTEiJ_G0017937.1 mouse_genomes_project 11 72397969 72495608 - MGP_CASTEiJ_P0029890 Pitpnm3 protein_coding protein_coding MGP_CASTEiJ_T0029891.1 MGP_CASTEiJ_G0017937.1 mouse_genomes_project 11 72401561 72402502 - Pitpnm3 protein_coding processed_transcript MGP_CASTEiJ_T0029892.1 MGP_CASTEiJ_G0017937.1 mouse_genomes_project 11 72410371 72414278 - Pitpnm3 protein_coding retained_intron MGP_CASTEiJ_T0029893.1 MGP_CASTEiJ_G0017937.1 mouse_genomes_project 11 72420526 72495665 - Pitpnm3 protein_coding retained_intron MGP_CASTEiJ_T0031782.1 MGP_CASTEiJ_G0018398.1 mouse_genomes_project 11 101867352 101880211 - Krt26 protein_coding processed_transcript MGP_CASTEiJ_T0031783.1 MGP_CASTEiJ_G0018398.1 mouse_genomes_project 11 101867416 101880212 - MGP_CASTEiJ_P0031783 Krt26 protein_coding protein_coding MGP_CASTEiJ_T0027976.1 MGP_CASTEiJ_G0017482.1 mouse_genomes_project 11 39090895 39097702 - MGP_CASTEiJ_P0027976 Ccng1 protein_coding protein_coding MGP_CASTEiJ_T0027977.1 MGP_CASTEiJ_G0017482.1 mouse_genomes_project 11 39091433 39096320 - Ccng1 protein_coding processed_transcript MGP_CASTEiJ_T0033035.1 MGP_CASTEiJ_G0018695.1 mouse_genomes_project 11 119382056 119401594 - MGP_CASTEiJ_P0033035 Hn1 protein_coding protein_coding MGP_CASTEiJ_T0033036.1 MGP_CASTEiJ_G0018695.1 mouse_genomes_project 11 119385128 119401355 - Hn1 protein_coding processed_transcript MGP_CASTEiJ_T0033037.1 MGP_CASTEiJ_G0018695.1 mouse_genomes_project 11 119385227 119401555 - Hn1 protein_coding processed_transcript MGP_CASTEiJ_T0033038.1 MGP_CASTEiJ_G0018695.1 mouse_genomes_project 11 119387478 119401578 - Hn1 protein_coding processed_transcript MGP_CASTEiJ_T0033039.1 MGP_CASTEiJ_G0018695.1 mouse_genomes_project 11 119390065 119401323 - Hn1 protein_coding processed_transcript MGP_CASTEiJ_T0030252.1 MGP_CASTEiJ_G0018039.1 mouse_genomes_project 11 76847837 76854740 + MGP_CASTEiJ_P0030252 Rnmtl1 protein_coding protein_coding MGP_CASTEiJ_T0030253.1 MGP_CASTEiJ_G0018039.1 mouse_genomes_project 11 76847858 76849005 + Rnmtl1 protein_coding retained_intron MGP_CASTEiJ_T0030254.1 MGP_CASTEiJ_G0018039.1 mouse_genomes_project 11 76853332 76854629 + Rnmtl1 protein_coding processed_transcript MGP_CASTEiJ_T0098458.1 MGP_CASTEiJ_G0035389.1 mouse_genomes_project 11 49618884 49618997 + Gm23392 rRNA rRNA MGP_CASTEiJ_T0031788.1 MGP_CASTEiJ_G0018403.1 mouse_genomes_project 11 101980343 101990132 - MGP_CASTEiJ_P0031788 Krt20 protein_coding protein_coding MGP_CASTEiJ_T0012264.1 MGP_CASTEiJ_G0010427.1 mouse_genomes_project 11 57423932 57424602 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009506.1 MGP_CASTEiJ_G0007694.1 mouse_genomes_project 11 105536311 105536420 - Gm22920 miRNA miRNA MGP_CASTEiJ_T0029944.1 MGP_CASTEiJ_G0017951.1 mouse_genomes_project 11 72979097 73072595 + MGP_CASTEiJ_P0029944 protein_coding protein_coding MGP_CASTEiJ_T0029945.1 MGP_CASTEiJ_G0017951.1 mouse_genomes_project 11 72979097 73072595 + MGP_CASTEiJ_P0029945 protein_coding protein_coding MGP_CASTEiJ_T0029946.1 MGP_CASTEiJ_G0017951.1 mouse_genomes_project 11 72979133 73066255 + protein_coding retained_intron MGP_CASTEiJ_T0009418.1 MGP_CASTEiJ_G0007606.1 mouse_genomes_project 11 26585062 26585170 + Mir217 miRNA miRNA MGP_CASTEiJ_T0012320.1 MGP_CASTEiJ_G0010483.1 mouse_genomes_project 11 77748754 77749058 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012283.1 MGP_CASTEiJ_G0010446.1 mouse_genomes_project 11 62020739 62021040 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033906.1 MGP_CASTEiJ_G0018853.1 mouse_genomes_project 11 125891155 125899527 - MGP_CASTEiJ_P0033906 Zfp750 protein_coding protein_coding MGP_CASTEiJ_T0030529.1 MGP_CASTEiJ_G0018094.1 mouse_genomes_project 11 79315274 79320655 + MGP_CASTEiJ_P0030529 Ift20 protein_coding protein_coding MGP_CASTEiJ_T0030530.1 MGP_CASTEiJ_G0018094.1 mouse_genomes_project 11 79315341 79320304 + MGP_CASTEiJ_P0030530 Ift20 protein_coding protein_coding MGP_CASTEiJ_T0030531.1 MGP_CASTEiJ_G0018094.1 mouse_genomes_project 11 79315356 79320410 + MGP_CASTEiJ_P0030531 Ift20 protein_coding protein_coding MGP_CASTEiJ_T0030532.1 MGP_CASTEiJ_G0018094.1 mouse_genomes_project 11 79315358 79320410 + Ift20 protein_coding retained_intron MGP_CASTEiJ_T0030533.1 MGP_CASTEiJ_G0018094.1 mouse_genomes_project 11 79315386 79320410 + Ift20 protein_coding retained_intron MGP_CASTEiJ_T0009493.1 MGP_CASTEiJ_G0007681.1 mouse_genomes_project 11 99965501 99965572 + Mir6927 miRNA miRNA MGP_CASTEiJ_T0012280.1 MGP_CASTEiJ_G0010443.1 mouse_genomes_project 11 61042141 61042555 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028789.1 MGP_CASTEiJ_G0017710.1 mouse_genomes_project 11 58974699 58994182 - MGP_CASTEiJ_P0028789 Zkscan17 protein_coding protein_coding MGP_CASTEiJ_T0028790.1 MGP_CASTEiJ_G0017710.1 mouse_genomes_project 11 58989419 58996139 - Zkscan17 protein_coding processed_transcript MGP_CASTEiJ_T0028791.1 MGP_CASTEiJ_G0017710.1 mouse_genomes_project 11 58994070 59016482 - Zkscan17 protein_coding processed_transcript MGP_CASTEiJ_T0028792.1 MGP_CASTEiJ_G0017710.1 mouse_genomes_project 11 58994076 58996139 - Zkscan17 protein_coding processed_transcript MGP_CASTEiJ_T0028793.1 MGP_CASTEiJ_G0017710.1 mouse_genomes_project 11 59015304 59016602 - Zkscan17 protein_coding processed_transcript MGP_CASTEiJ_T0031784.1 MGP_CASTEiJ_G0018399.1 mouse_genomes_project 11 101889094 101894645 - MGP_CASTEiJ_P0031784 Krt27 protein_coding protein_coding MGP_CASTEiJ_T0100453.1 MGP_CASTEiJ_G0037366.1 mouse_genomes_project 11 72184813 72184944 - Gm22927 snoRNA snoRNA MGP_CASTEiJ_T0028365.1 MGP_CASTEiJ_G0017586.1 mouse_genomes_project 11 50521533 50533498 - MGP_CASTEiJ_P0028365 Rmnd5b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028366.1 MGP_CASTEiJ_G0017586.1 mouse_genomes_project 11 50521535 50533747 - MGP_CASTEiJ_P0028366 Rmnd5b protein_coding protein_coding MGP_CASTEiJ_T0028367.1 MGP_CASTEiJ_G0017586.1 mouse_genomes_project 11 50521904 50523702 - MGP_CASTEiJ_P0028367 Rmnd5b protein_coding protein_coding MGP_CASTEiJ_T0028368.1 MGP_CASTEiJ_G0017586.1 mouse_genomes_project 11 50527168 50533604 - Rmnd5b protein_coding processed_transcript MGP_CASTEiJ_T0006099.1 MGP_CASTEiJ_G0005107.1 mouse_genomes_project 11 67043859 67051886 - 2310065F04Rik lincRNA lincRNA MGP_CASTEiJ_T0006100.1 MGP_CASTEiJ_G0005107.1 mouse_genomes_project 11 67045410 67048217 - 2310065F04Rik lincRNA lincRNA MGP_CASTEiJ_T0027336.1 MGP_CASTEiJ_G0017337.1 mouse_genomes_project 11 3380852 3397909 + MGP_CASTEiJ_P0027336 Zmiz2 protein_coding protein_coding MGP_CASTEiJ_T0027337.1 MGP_CASTEiJ_G0017337.1 mouse_genomes_project 11 3381142 3397909 + MGP_CASTEiJ_P0027337 Zmiz2 protein_coding protein_coding MGP_CASTEiJ_T0027338.1 MGP_CASTEiJ_G0017337.1 mouse_genomes_project 11 3381249 3397909 + MGP_CASTEiJ_P0027338 Zmiz2 protein_coding protein_coding MGP_CASTEiJ_T0027339.1 MGP_CASTEiJ_G0017337.1 mouse_genomes_project 11 3386939 3397825 + MGP_CASTEiJ_P0027339 Zmiz2 protein_coding protein_coding MGP_CASTEiJ_T0027340.1 MGP_CASTEiJ_G0017337.1 mouse_genomes_project 11 3387356 3397681 + MGP_CASTEiJ_P0027340 Zmiz2 protein_coding protein_coding MGP_CASTEiJ_T0027341.1 MGP_CASTEiJ_G0017337.1 mouse_genomes_project 11 3388480 3389600 + Zmiz2 protein_coding retained_intron MGP_CASTEiJ_T0098740.1 MGP_CASTEiJ_G0035671.1 mouse_genomes_project 11 120137228 120137355 - Gm26413 scaRNA scaRNA MGP_CASTEiJ_T0033304.1 MGP_CASTEiJ_G0018740.1 mouse_genomes_project 11 120699488 120703620 + MGP_CASTEiJ_P0033304 1810032O08Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033305.1 MGP_CASTEiJ_G0018740.1 mouse_genomes_project 11 120699497 120703617 + MGP_CASTEiJ_P0033305 1810032O08Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033306.1 MGP_CASTEiJ_G0018740.1 mouse_genomes_project 11 120699497 120703620 + MGP_CASTEiJ_P0033306 1810032O08Rik protein_coding protein_coding MGP_CASTEiJ_T0033307.1 MGP_CASTEiJ_G0018740.1 mouse_genomes_project 11 120699524 120700451 + 1810032O08Rik protein_coding retained_intron MGP_CASTEiJ_T0033308.1 MGP_CASTEiJ_G0018740.1 mouse_genomes_project 11 120699536 120702406 + MGP_CASTEiJ_P0033308 1810032O08Rik protein_coding protein_coding MGP_CASTEiJ_T0033309.1 MGP_CASTEiJ_G0018740.1 mouse_genomes_project 11 120699709 120701800 + MGP_CASTEiJ_P0033309 1810032O08Rik protein_coding protein_coding MGP_CASTEiJ_T0033310.1 MGP_CASTEiJ_G0018740.1 mouse_genomes_project 11 120700520 120703621 + MGP_CASTEiJ_P0033310 1810032O08Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006210.1 MGP_CASTEiJ_G0005186.1 mouse_genomes_project 11 121633514 121645058 + Gm11734 lincRNA lincRNA MGP_CASTEiJ_T0028708.1 MGP_CASTEiJ_G0017684.1 mouse_genomes_project 11 58071361 58072489 + MGP_CASTEiJ_P0028708 protein_coding protein_coding MGP_CASTEiJ_T0003199.1 MGP_CASTEiJ_G0002963.1 mouse_genomes_project 11 106291837 106299012 + Arhgap27os2 antisense antisense MGP_CASTEiJ_T0029430.1 MGP_CASTEiJ_G0017846.1 mouse_genomes_project 11 69667926 69678001 + Trp53 protein_coding processed_transcript MGP_CASTEiJ_T0029431.1 MGP_CASTEiJ_G0017846.1 mouse_genomes_project 11 69674396 69678925 + MGP_CASTEiJ_P0029431 Trp53 protein_coding protein_coding MGP_CASTEiJ_T0029432.1 MGP_CASTEiJ_G0017846.1 mouse_genomes_project 11 69674396 69678802 + MGP_CASTEiJ_P0029432 Trp53 protein_coding protein_coding MGP_CASTEiJ_T0029433.1 MGP_CASTEiJ_G0017846.1 mouse_genomes_project 11 69676193 69677320 + Trp53 protein_coding processed_transcript MGP_CASTEiJ_T0029921.1 MGP_CASTEiJ_G0017946.1 mouse_genomes_project 11 72753496 72775152 - MGP_CASTEiJ_P0029921 Smtnl2 protein_coding protein_coding MGP_CASTEiJ_T0029922.1 MGP_CASTEiJ_G0017946.1 mouse_genomes_project 11 72761992 72765235 - Smtnl2 protein_coding processed_transcript MGP_CASTEiJ_T0029923.1 MGP_CASTEiJ_G0017946.1 mouse_genomes_project 11 72763612 72764868 - Smtnl2 protein_coding processed_transcript MGP_CASTEiJ_T0027832.1 MGP_CASTEiJ_G0017444.1 mouse_genomes_project 11 30156458 30160040 + MGP_CASTEiJ_P0027832 Snrnp25 protein_coding protein_coding MGP_CASTEiJ_T0027833.1 MGP_CASTEiJ_G0017444.1 mouse_genomes_project 11 30156489 30159454 + MGP_CASTEiJ_P0027833 Snrnp25 protein_coding protein_coding MGP_CASTEiJ_T0027834.1 MGP_CASTEiJ_G0017444.1 mouse_genomes_project 11 30156501 30158692 + Snrnp25 protein_coding processed_transcript MGP_CASTEiJ_T0027835.1 MGP_CASTEiJ_G0017444.1 mouse_genomes_project 11 30156531 30159929 + MGP_CASTEiJ_P0027835 Snrnp25 protein_coding protein_coding MGP_CASTEiJ_T0027836.1 MGP_CASTEiJ_G0017444.1 mouse_genomes_project 11 30157803 30160040 + Snrnp25 protein_coding retained_intron MGP_CASTEiJ_T0027893.1 MGP_CASTEiJ_G0017459.1 mouse_genomes_project 11 31134806 31189576 - MGP_CASTEiJ_P0027893 Fgf18 protein_coding protein_coding MGP_CASTEiJ_T0027894.1 MGP_CASTEiJ_G0017459.1 mouse_genomes_project 11 31159549 31189652 - MGP_CASTEiJ_P0027894 Fgf18 protein_coding protein_coding MGP_CASTEiJ_T0012346.1 MGP_CASTEiJ_G0010509.1 mouse_genomes_project 11 88062395 88063767 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101518.1 MGP_CASTEiJ_G0038413.1 mouse_genomes_project 11 110762397 110762755 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0003020.1 MGP_CASTEiJ_G0002816.1 mouse_genomes_project 11 15290552 15295981 + Etaa1os antisense antisense MGP_CASTEiJ_T0003021.1 MGP_CASTEiJ_G0002816.1 mouse_genomes_project 11 15290586 15291681 + Etaa1os antisense antisense MGP_CASTEiJ_T0099270.1 MGP_CASTEiJ_G0036183.1 mouse_genomes_project 11 98228493 98228677 - Gm22423 snRNA snRNA MGP_CASTEiJ_T0099280.1 MGP_CASTEiJ_G0036193.1 mouse_genomes_project 11 108141072 108141177 + Gm25362 snRNA snRNA MGP_CASTEiJ_T0099275.1 MGP_CASTEiJ_G0036188.1 mouse_genomes_project 11 102459770 102459867 + Gm26324 snRNA snRNA MGP_CASTEiJ_T0099253.1 MGP_CASTEiJ_G0036166.1 mouse_genomes_project 11 80500286 80500389 - Gm25867 snRNA snRNA MGP_CASTEiJ_T0029689.1 MGP_CASTEiJ_G0017900.1 mouse_genomes_project 11 70502622 70512074 - MGP_CASTEiJ_P0029689 Alox15 protein_coding protein_coding MGP_CASTEiJ_T0029690.1 MGP_CASTEiJ_G0017900.1 mouse_genomes_project 11 70503143 70504235 - Alox15 protein_coding processed_transcript MGP_CASTEiJ_T0030049.1 MGP_CASTEiJ_G0017996.1 mouse_genomes_project 11 74701477 74704122 - MGP_CASTEiJ_P0030049 protein_coding protein_coding MGP_CASTEiJ_T0027940.1 MGP_CASTEiJ_G0017474.1 mouse_genomes_project 11 33830733 33852139 + MGP_CASTEiJ_P0027940 Pank3 protein_coding protein_coding MGP_CASTEiJ_T0010985.1 MGP_CASTEiJ_G0009173.1 mouse_genomes_project 11 108198375 108198471 + Gm24290 misc_RNA misc_RNA MGP_CASTEiJ_T0012371.1 MGP_CASTEiJ_G0010534.1 mouse_genomes_project 11 99352975 99353095 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032780.1 MGP_CASTEiJ_G0018637.1 mouse_genomes_project 11 112760537 112774868 + MGP_CASTEiJ_P0032780 Amz2 protein_coding protein_coding MGP_CASTEiJ_T0032781.1 MGP_CASTEiJ_G0018637.1 mouse_genomes_project 11 112760567 112800999 + MGP_CASTEiJ_P0032781 Amz2 protein_coding protein_coding MGP_CASTEiJ_T0032782.1 MGP_CASTEiJ_G0018637.1 mouse_genomes_project 11 112760573 112765582 + Amz2 protein_coding retained_intron MGP_CASTEiJ_T0032783.1 MGP_CASTEiJ_G0018637.1 mouse_genomes_project 11 112760580 112800508 + MGP_CASTEiJ_P0032783 Amz2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032784.1 MGP_CASTEiJ_G0018637.1 mouse_genomes_project 11 112760814 112771623 + MGP_CASTEiJ_P0032784 Amz2 protein_coding protein_coding MGP_CASTEiJ_T0032785.1 MGP_CASTEiJ_G0018637.1 mouse_genomes_project 11 112767334 112769261 + Amz2 protein_coding processed_transcript MGP_CASTEiJ_T0032786.1 MGP_CASTEiJ_G0018637.1 mouse_genomes_project 11 112768415 112769366 + Amz2 protein_coding retained_intron MGP_CASTEiJ_T0032787.1 MGP_CASTEiJ_G0018637.1 mouse_genomes_project 11 112768628 112773971 + Amz2 protein_coding processed_transcript MGP_CASTEiJ_T0032788.1 MGP_CASTEiJ_G0018637.1 mouse_genomes_project 11 112777708 112801441 + Amz2 protein_coding processed_transcript MGP_CASTEiJ_T0028659.1 MGP_CASTEiJ_G0017661.1 mouse_genomes_project 11 57513688 57522933 + MGP_CASTEiJ_P0028659 Mrpl22 protein_coding protein_coding MGP_CASTEiJ_T0028660.1 MGP_CASTEiJ_G0017661.1 mouse_genomes_project 11 57513729 57519588 + Mrpl22 protein_coding processed_transcript MGP_CASTEiJ_T0028661.1 MGP_CASTEiJ_G0017661.1 mouse_genomes_project 11 57513742 57520666 + Mrpl22 protein_coding processed_transcript MGP_CASTEiJ_T0003184.1 MGP_CASTEiJ_G0002948.1 mouse_genomes_project 11 102678201 102712880 + Gm11571 antisense antisense MGP_CASTEiJ_T0029935.1 MGP_CASTEiJ_G0017949.1 mouse_genomes_project 11 72818580 72856785 - MGP_CASTEiJ_P0029935 Spns2 protein_coding protein_coding MGP_CASTEiJ_T0029936.1 MGP_CASTEiJ_G0017949.1 mouse_genomes_project 11 72818584 72821484 - Spns2 protein_coding retained_intron MGP_CASTEiJ_T0029937.1 MGP_CASTEiJ_G0017949.1 mouse_genomes_project 11 72819550 72823293 - Spns2 protein_coding processed_transcript MGP_CASTEiJ_T0029938.1 MGP_CASTEiJ_G0017949.1 mouse_genomes_project 11 72819674 72823564 - MGP_CASTEiJ_P0029938 Spns2 protein_coding protein_coding MGP_CASTEiJ_T0029939.1 MGP_CASTEiJ_G0017949.1 mouse_genomes_project 11 72819783 72821061 - Spns2 protein_coding processed_transcript MGP_CASTEiJ_T0029940.1 MGP_CASTEiJ_G0017949.1 mouse_genomes_project 11 72825971 72841962 - Spns2 protein_coding processed_transcript MGP_CASTEiJ_T0031603.1 MGP_CASTEiJ_G0018355.1 mouse_genomes_project 11 100304402 100311930 - MGP_CASTEiJ_P0031603 Arl5c protein_coding protein_coding MGP_CASTEiJ_T0031604.1 MGP_CASTEiJ_G0018355.1 mouse_genomes_project 11 100305079 100311706 - MGP_CASTEiJ_P0031604 Arl5c protein_coding unknown_likely_coding MGP_CASTEiJ_T0031605.1 MGP_CASTEiJ_G0018355.1 mouse_genomes_project 11 100309593 100311678 - MGP_CASTEiJ_P0031605 Arl5c protein_coding protein_coding MGP_CASTEiJ_T0028318.1 MGP_CASTEiJ_G0017574.1 mouse_genomes_project 11 49801107 49805332 + MGP_CASTEiJ_P0028318 protein_coding protein_coding MGP_CASTEiJ_T0028319.1 MGP_CASTEiJ_G0017574.1 mouse_genomes_project 11 49803708 49805639 + MGP_CASTEiJ_P0028319 protein_coding protein_coding MGP_CASTEiJ_T0029244.1 MGP_CASTEiJ_G0017804.1 mouse_genomes_project 11 67766758 67769381 + Dhrs7c protein_coding processed_transcript MGP_CASTEiJ_T0029245.1 MGP_CASTEiJ_G0017804.1 mouse_genomes_project 11 67766842 67769749 + Dhrs7c protein_coding processed_transcript MGP_CASTEiJ_T0029246.1 MGP_CASTEiJ_G0017804.1 mouse_genomes_project 11 67766847 67769910 + Dhrs7c protein_coding processed_transcript MGP_CASTEiJ_T0029247.1 MGP_CASTEiJ_G0017804.1 mouse_genomes_project 11 67766848 67767638 + Dhrs7c protein_coding processed_transcript MGP_CASTEiJ_T0029248.1 MGP_CASTEiJ_G0017804.1 mouse_genomes_project 11 67766858 67784669 + MGP_CASTEiJ_P0029248 Dhrs7c protein_coding protein_coding MGP_CASTEiJ_T0029249.1 MGP_CASTEiJ_G0017804.1 mouse_genomes_project 11 67766869 67784677 + MGP_CASTEiJ_P0029249 Dhrs7c protein_coding unknown_likely_coding MGP_CASTEiJ_T0028934.1 MGP_CASTEiJ_G0017740.1 mouse_genomes_project 11 60527803 60551201 + MGP_CASTEiJ_P0028934 Map2k3 protein_coding protein_coding MGP_CASTEiJ_T0028935.1 MGP_CASTEiJ_G0017740.1 mouse_genomes_project 11 60527824 60545999 + Map2k3 protein_coding retained_intron MGP_CASTEiJ_T0028936.1 MGP_CASTEiJ_G0017740.1 mouse_genomes_project 11 60527824 60539363 + Map2k3 protein_coding retained_intron MGP_CASTEiJ_T0028937.1 MGP_CASTEiJ_G0017740.1 mouse_genomes_project 11 60527836 60551184 + MGP_CASTEiJ_P0028937 Map2k3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028938.1 MGP_CASTEiJ_G0017740.1 mouse_genomes_project 11 60539126 60545179 + Map2k3 protein_coding processed_transcript MGP_CASTEiJ_T0028939.1 MGP_CASTEiJ_G0017740.1 mouse_genomes_project 11 60549049 60550209 + Map2k3 protein_coding retained_intron MGP_CASTEiJ_T0101980.1 MGP_CASTEiJ_G0038705.1 mouse_genomes_project 11 49773885 49775430 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0030965.1 MGP_CASTEiJ_G0018206.1 mouse_genomes_project 11 88482649 88522944 - MGP_CASTEiJ_P0030965 Gdpd1 protein_coding protein_coding MGP_CASTEiJ_T0028450.1 MGP_CASTEiJ_G0017609.1 mouse_genomes_project 11 52530552 52532839 - MGP_CASTEiJ_P0028450 Gm10447 protein_coding protein_coding MGP_CASTEiJ_T0012232.1 MGP_CASTEiJ_G0010395.1 mouse_genomes_project 11 45161251 45161828 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003054.1 MGP_CASTEiJ_G0002846.1 mouse_genomes_project 11 52157947 52166342 - Gm11186 antisense antisense MGP_CASTEiJ_T0028014.1 MGP_CASTEiJ_G0017491.1 mouse_genomes_project 11 41899440 41916527 + MGP_CASTEiJ_P0028014 C1qtnf2 protein_coding protein_coding MGP_CASTEiJ_T0028015.1 MGP_CASTEiJ_G0017491.1 mouse_genomes_project 11 41899470 41916547 + MGP_CASTEiJ_P0028015 C1qtnf2 protein_coding protein_coding MGP_CASTEiJ_T0028016.1 MGP_CASTEiJ_G0017491.1 mouse_genomes_project 11 41906082 41915886 + MGP_CASTEiJ_P0028016 C1qtnf2 protein_coding protein_coding MGP_CASTEiJ_T0033544.1 MGP_CASTEiJ_G0018785.1 mouse_genomes_project 11 123645334 123751460 + MGP_CASTEiJ_P0033544 Rnf213 protein_coding protein_coding MGP_CASTEiJ_T0033545.1 MGP_CASTEiJ_G0018785.1 mouse_genomes_project 11 123645334 123751463 + MGP_CASTEiJ_P0033545 Rnf213 protein_coding protein_coding MGP_CASTEiJ_T0033546.1 MGP_CASTEiJ_G0018785.1 mouse_genomes_project 11 123645989 123751472 + MGP_CASTEiJ_P0033546 Rnf213 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033547.1 MGP_CASTEiJ_G0018785.1 mouse_genomes_project 11 123742096 123751462 + MGP_CASTEiJ_P0033547 Rnf213 protein_coding protein_coding MGP_CASTEiJ_T0006069.1 MGP_CASTEiJ_G0005082.1 mouse_genomes_project 11 45142300 45156276 + Gm12171 lincRNA lincRNA MGP_CASTEiJ_T0006070.1 MGP_CASTEiJ_G0005082.1 mouse_genomes_project 11 45146306 45155277 + Gm12171 lincRNA lincRNA MGP_CASTEiJ_T0012197.1 MGP_CASTEiJ_G0010360.1 mouse_genomes_project 11 27523122 27524721 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030125.1 MGP_CASTEiJ_G0018013.1 mouse_genomes_project 11 75706492 75720426 - MGP_CASTEiJ_P0030125 Dph1 protein_coding protein_coding MGP_CASTEiJ_T0030126.1 MGP_CASTEiJ_G0018013.1 mouse_genomes_project 11 75706554 75712246 - Dph1 protein_coding retained_intron MGP_CASTEiJ_T0030128.1 MGP_CASTEiJ_G0018013.1 mouse_genomes_project 11 75707154 75710189 - Dph1 protein_coding processed_transcript MGP_CASTEiJ_T0030129.1 MGP_CASTEiJ_G0018013.1 mouse_genomes_project 11 75708047 75712438 - Dph1 protein_coding processed_transcript MGP_CASTEiJ_T0030130.1 MGP_CASTEiJ_G0018013.1 mouse_genomes_project 11 75709701 75721148 - MGP_CASTEiJ_P0030130 Dph1 protein_coding protein_coding MGP_CASTEiJ_T0012297.1 MGP_CASTEiJ_G0010460.1 mouse_genomes_project 11 70076875 70077958 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031393.1 MGP_CASTEiJ_G0018305.1 mouse_genomes_project 11 98187645 98206474 - MGP_CASTEiJ_P0031393 Ube2z protein_coding protein_coding MGP_CASTEiJ_T0012337.1 MGP_CASTEiJ_G0010500.1 mouse_genomes_project 11 83828213 83828604 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032924.1 MGP_CASTEiJ_G0018667.1 mouse_genomes_project 11 118680834 118697591 + MGP_CASTEiJ_P0032924 Gprc5c protein_coding protein_coding MGP_CASTEiJ_T0032925.1 MGP_CASTEiJ_G0018667.1 mouse_genomes_project 11 118681222 118702951 + MGP_CASTEiJ_P0032925 Gprc5c protein_coding protein_coding MGP_CASTEiJ_T0032926.1 MGP_CASTEiJ_G0018667.1 mouse_genomes_project 11 118681532 118702952 + MGP_CASTEiJ_P0032926 Gprc5c protein_coding protein_coding MGP_CASTEiJ_T0032927.1 MGP_CASTEiJ_G0018667.1 mouse_genomes_project 11 118681562 118698205 + MGP_CASTEiJ_P0032927 Gprc5c protein_coding protein_coding MGP_CASTEiJ_T0032928.1 MGP_CASTEiJ_G0018667.1 mouse_genomes_project 11 118681579 118704262 + MGP_CASTEiJ_P0032928 Gprc5c protein_coding protein_coding MGP_CASTEiJ_T0032929.1 MGP_CASTEiJ_G0018667.1 mouse_genomes_project 11 118682001 118697755 + MGP_CASTEiJ_P0032929 Gprc5c protein_coding protein_coding MGP_CASTEiJ_T0032930.1 MGP_CASTEiJ_G0018667.1 mouse_genomes_project 11 118698349 118704463 + MGP_CASTEiJ_P0032930 Gprc5c protein_coding protein_coding MGP_CASTEiJ_T0006137.1 MGP_CASTEiJ_G0005133.1 mouse_genomes_project 11 86017699 86021158 - 1700109G15Rik lincRNA lincRNA MGP_CASTEiJ_T0031801.1 MGP_CASTEiJ_G0018414.1 mouse_genomes_project 11 102161668 102162436 - MGP_CASTEiJ_P0031801 Krtap9-3 protein_coding protein_coding MGP_CASTEiJ_T0012181.1 MGP_CASTEiJ_G0010344.1 mouse_genomes_project 11 20346600 20347037 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027752.1 MGP_CASTEiJ_G0017425.1 mouse_genomes_project 11 27374848 27376784 - MGP_CASTEiJ_P0027752 Rps27a protein_coding unknown_likely_coding MGP_CASTEiJ_T0027753.1 MGP_CASTEiJ_G0017425.1 mouse_genomes_project 11 27374855 27375681 - Rps27a protein_coding processed_transcript MGP_CASTEiJ_T0027754.1 MGP_CASTEiJ_G0017425.1 mouse_genomes_project 11 27374855 27376870 - MGP_CASTEiJ_P0027754 Rps27a protein_coding protein_coding MGP_CASTEiJ_T0027755.1 MGP_CASTEiJ_G0017425.1 mouse_genomes_project 11 27374855 27377119 - MGP_CASTEiJ_P0027755 Rps27a protein_coding protein_coding MGP_CASTEiJ_T0027756.1 MGP_CASTEiJ_G0017425.1 mouse_genomes_project 11 27374908 27376892 - Rps27a protein_coding processed_transcript MGP_CASTEiJ_T0027757.1 MGP_CASTEiJ_G0017425.1 mouse_genomes_project 11 27376125 27376901 - Rps27a protein_coding processed_transcript MGP_CASTEiJ_T0101978.1 MGP_CASTEiJ_G0038703.1 mouse_genomes_project 11 45135430 45135730 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0029154.1 MGP_CASTEiJ_G0017780.1 mouse_genomes_project 11 64265065 64266563 - MGP_CASTEiJ_P0029154 F930015N05Rik protein_coding protein_coding MGP_CASTEiJ_T0101721.1 MGP_CASTEiJ_G0038535.1 mouse_genomes_project 11 2706548 2732986 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101722.1 MGP_CASTEiJ_G0038535.1 mouse_genomes_project 11 2706569 2733323 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101723.1 MGP_CASTEiJ_G0038535.1 mouse_genomes_project 11 2706569 2735804 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101724.1 MGP_CASTEiJ_G0038535.1 mouse_genomes_project 11 2706636 2735021 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0101725.1 MGP_CASTEiJ_G0038535.1 mouse_genomes_project 11 2711529 2735512 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0029548.1 MGP_CASTEiJ_G0017875.1 mouse_genomes_project 11 70021892 70024232 + Neurl4 protein_coding processed_transcript MGP_CASTEiJ_T0029549.1 MGP_CASTEiJ_G0017875.1 mouse_genomes_project 11 70022636 70034344 + MGP_CASTEiJ_P0029549 Neurl4 protein_coding protein_coding MGP_CASTEiJ_T0029550.1 MGP_CASTEiJ_G0017875.1 mouse_genomes_project 11 70022636 70034344 + MGP_CASTEiJ_P0029550 Neurl4 protein_coding protein_coding MGP_CASTEiJ_T0029551.1 MGP_CASTEiJ_G0017875.1 mouse_genomes_project 11 70022636 70034344 + MGP_CASTEiJ_P0029551 Neurl4 protein_coding protein_coding MGP_CASTEiJ_T0029552.1 MGP_CASTEiJ_G0017875.1 mouse_genomes_project 11 70022711 70034649 + MGP_CASTEiJ_P0029552 Neurl4 protein_coding protein_coding MGP_CASTEiJ_T0029553.1 MGP_CASTEiJ_G0017875.1 mouse_genomes_project 11 70022847 70026426 + Neurl4 protein_coding retained_intron MGP_CASTEiJ_T0029554.1 MGP_CASTEiJ_G0017875.1 mouse_genomes_project 11 70022976 70024747 + Neurl4 protein_coding processed_transcript MGP_CASTEiJ_T0029555.1 MGP_CASTEiJ_G0017875.1 mouse_genomes_project 11 70024224 70034160 + MGP_CASTEiJ_P0029555 Neurl4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029556.1 MGP_CASTEiJ_G0017875.1 mouse_genomes_project 11 70024867 70029564 + MGP_CASTEiJ_P0029556 Neurl4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029557.1 MGP_CASTEiJ_G0017875.1 mouse_genomes_project 11 70028092 70029350 + Neurl4 protein_coding retained_intron MGP_CASTEiJ_T0029558.1 MGP_CASTEiJ_G0017875.1 mouse_genomes_project 11 70029463 70031151 + Neurl4 protein_coding retained_intron MGP_CASTEiJ_T0029559.1 MGP_CASTEiJ_G0017875.1 mouse_genomes_project 11 70029804 70031692 + Neurl4 protein_coding retained_intron MGP_CASTEiJ_T0029560.1 MGP_CASTEiJ_G0017875.1 mouse_genomes_project 11 70031862 70033981 + MGP_CASTEiJ_P0029560 Neurl4 protein_coding protein_coding MGP_CASTEiJ_T0006071.1 MGP_CASTEiJ_G0005083.1 mouse_genomes_project 11 45253751 45267310 - lincRNA lincRNA MGP_CASTEiJ_T0011468.1 MGP_CASTEiJ_G0009653.1 mouse_genomes_project 11 74763473 74764445 + MGP_CASTEiJ_P0011468 Olfr409-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0012135.1 MGP_CASTEiJ_G0010298.1 mouse_genomes_project 11 7584964 7585277 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032653.1 MGP_CASTEiJ_G0018614.1 mouse_genomes_project 11 109801252 109865361 - MGP_CASTEiJ_P0032653 Pecam1 protein_coding protein_coding MGP_CASTEiJ_T0032654.1 MGP_CASTEiJ_G0018614.1 mouse_genomes_project 11 109802030 109903597 - MGP_CASTEiJ_P0032654 Pecam1 protein_coding protein_coding MGP_CASTEiJ_T0032655.1 MGP_CASTEiJ_G0018614.1 mouse_genomes_project 11 109809615 109811808 - Pecam1 protein_coding retained_intron MGP_CASTEiJ_T0032656.1 MGP_CASTEiJ_G0018614.1 mouse_genomes_project 11 109810295 109904053 - MGP_CASTEiJ_P0032656 Pecam1 protein_coding protein_coding MGP_CASTEiJ_T0032657.1 MGP_CASTEiJ_G0018614.1 mouse_genomes_project 11 109837261 109841934 - Pecam1 protein_coding retained_intron MGP_CASTEiJ_T0032658.1 MGP_CASTEiJ_G0018614.1 mouse_genomes_project 11 109841669 109865045 - MGP_CASTEiJ_P0032658 Pecam1 protein_coding protein_coding MGP_CASTEiJ_T0030149.1 MGP_CASTEiJ_G0018018.1 mouse_genomes_project 11 75971355 75979933 - MGP_CASTEiJ_P0030149 Serpinf2 protein_coding protein_coding MGP_CASTEiJ_T0030150.1 MGP_CASTEiJ_G0018018.1 mouse_genomes_project 11 75971359 75980534 - MGP_CASTEiJ_P0030150 Serpinf2 protein_coding protein_coding MGP_CASTEiJ_T0030151.1 MGP_CASTEiJ_G0018018.1 mouse_genomes_project 11 75975723 75980624 - MGP_CASTEiJ_P0030151 Serpinf2 protein_coding protein_coding MGP_CASTEiJ_T0030152.1 MGP_CASTEiJ_G0018018.1 mouse_genomes_project 11 75976242 75980611 - MGP_CASTEiJ_P0030152 Serpinf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012279.1 MGP_CASTEiJ_G0010442.1 mouse_genomes_project 11 60822859 60823315 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029694.1 MGP_CASTEiJ_G0017902.1 mouse_genomes_project 11 70599253 70602616 + Arrb2 protein_coding retained_intron MGP_CASTEiJ_T0029695.1 MGP_CASTEiJ_G0017902.1 mouse_genomes_project 11 70599255 70607299 + MGP_CASTEiJ_P0029695 Arrb2 protein_coding protein_coding MGP_CASTEiJ_T0029696.1 MGP_CASTEiJ_G0017902.1 mouse_genomes_project 11 70599255 70607299 + MGP_CASTEiJ_P0029696 Arrb2 protein_coding protein_coding MGP_CASTEiJ_T0029697.1 MGP_CASTEiJ_G0017902.1 mouse_genomes_project 11 70599263 70607454 + MGP_CASTEiJ_P0029697 Arrb2 protein_coding protein_coding MGP_CASTEiJ_T0029698.1 MGP_CASTEiJ_G0017902.1 mouse_genomes_project 11 70599295 70604227 + MGP_CASTEiJ_P0029698 Arrb2 protein_coding protein_coding MGP_CASTEiJ_T0029699.1 MGP_CASTEiJ_G0017902.1 mouse_genomes_project 11 70599300 70605367 + MGP_CASTEiJ_P0029699 Arrb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029700.1 MGP_CASTEiJ_G0017902.1 mouse_genomes_project 11 70599349 70607308 + MGP_CASTEiJ_P0029700 Arrb2 protein_coding protein_coding MGP_CASTEiJ_T0029701.1 MGP_CASTEiJ_G0017902.1 mouse_genomes_project 11 70603319 70606858 + Arrb2 protein_coding retained_intron MGP_CASTEiJ_T0029702.1 MGP_CASTEiJ_G0017902.1 mouse_genomes_project 11 70603522 70605342 + Arrb2 protein_coding retained_intron MGP_CASTEiJ_T0029703.1 MGP_CASTEiJ_G0017902.1 mouse_genomes_project 11 70603911 70606179 + Arrb2 protein_coding retained_intron MGP_CASTEiJ_T0029704.1 MGP_CASTEiJ_G0017902.1 mouse_genomes_project 11 70605201 70606853 + Arrb2 protein_coding retained_intron MGP_CASTEiJ_T0029756.1 MGP_CASTEiJ_G0017915.1 mouse_genomes_project 11 70832043 70834906 - MGP_CASTEiJ_P0029756 Slc25a11 protein_coding protein_coding MGP_CASTEiJ_T0029757.1 MGP_CASTEiJ_G0017915.1 mouse_genomes_project 11 70832542 70833758 - Slc25a11 protein_coding retained_intron MGP_CASTEiJ_T0029758.1 MGP_CASTEiJ_G0017915.1 mouse_genomes_project 11 70833078 70835324 - MGP_CASTEiJ_P0029758 Slc25a11 protein_coding protein_coding MGP_CASTEiJ_T0029759.1 MGP_CASTEiJ_G0017915.1 mouse_genomes_project 11 70833756 70834826 - Slc25a11 protein_coding retained_intron MGP_CASTEiJ_T0029760.1 MGP_CASTEiJ_G0017915.1 mouse_genomes_project 11 70833762 70834747 - MGP_CASTEiJ_P0029760 Slc25a11 protein_coding protein_coding MGP_CASTEiJ_T0028489.1 MGP_CASTEiJ_G0017620.1 mouse_genomes_project 11 52866529 52876341 + MGP_CASTEiJ_P0028489 Irf1 protein_coding protein_coding MGP_CASTEiJ_T0028490.1 MGP_CASTEiJ_G0017620.1 mouse_genomes_project 11 52866563 52874121 + MGP_CASTEiJ_P0028490 Irf1 protein_coding protein_coding MGP_CASTEiJ_T0028491.1 MGP_CASTEiJ_G0017620.1 mouse_genomes_project 11 52866566 52877392 + MGP_CASTEiJ_P0028491 Irf1 protein_coding protein_coding MGP_CASTEiJ_T0028492.1 MGP_CASTEiJ_G0017620.1 mouse_genomes_project 11 52866586 52875396 + Irf1 protein_coding processed_transcript MGP_CASTEiJ_T0028493.1 MGP_CASTEiJ_G0017620.1 mouse_genomes_project 11 52866620 52873103 + MGP_CASTEiJ_P0028493 Irf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028494.1 MGP_CASTEiJ_G0017620.1 mouse_genomes_project 11 52866655 52889182 + MGP_CASTEiJ_P0028494 Irf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028495.1 MGP_CASTEiJ_G0017620.1 mouse_genomes_project 11 52866986 52871951 + MGP_CASTEiJ_P0028495 Irf1 protein_coding protein_coding MGP_CASTEiJ_T0028496.1 MGP_CASTEiJ_G0017620.1 mouse_genomes_project 11 52866996 52873212 + MGP_CASTEiJ_P0028496 Irf1 protein_coding protein_coding MGP_CASTEiJ_T0028497.1 MGP_CASTEiJ_G0017620.1 mouse_genomes_project 11 52867004 52876341 + MGP_CASTEiJ_P0028497 Irf1 protein_coding protein_coding MGP_CASTEiJ_T0028498.1 MGP_CASTEiJ_G0017620.1 mouse_genomes_project 11 52867018 52872975 + MGP_CASTEiJ_P0028498 Irf1 protein_coding protein_coding MGP_CASTEiJ_T0028500.1 MGP_CASTEiJ_G0017620.1 mouse_genomes_project 11 52872170 52873148 + Irf1 protein_coding retained_intron MGP_CASTEiJ_T0101516.1 MGP_CASTEiJ_G0038411.1 mouse_genomes_project 11 75401523 75402842 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0006133.1 MGP_CASTEiJ_G0005131.1 mouse_genomes_project 11 85058744 85094250 - Gm12576 lincRNA lincRNA MGP_CASTEiJ_T0016543.1 MGP_CASTEiJ_G0014533.1 mouse_genomes_project 11 121526564 121546749 + Gm11732 processed_transcript processed_transcript MGP_CASTEiJ_T0031946.1 MGP_CASTEiJ_G0018475.1 mouse_genomes_project 11 103448786 103453683 - MGP_CASTEiJ_P0031946 Ghdc protein_coding protein_coding MGP_CASTEiJ_T0031947.1 MGP_CASTEiJ_G0018475.1 mouse_genomes_project 11 103449625 103451485 - Ghdc protein_coding processed_transcript MGP_CASTEiJ_T0031948.1 MGP_CASTEiJ_G0018475.1 mouse_genomes_project 11 103452462 103453668 - MGP_CASTEiJ_P0031948 Ghdc protein_coding protein_coding MGP_CASTEiJ_T0033258.1 MGP_CASTEiJ_G0018732.1 mouse_genomes_project 11 120441394 120454517 - MGP_CASTEiJ_P0033258 Qrich2 protein_coding protein_coding MGP_CASTEiJ_T0033259.1 MGP_CASTEiJ_G0018732.1 mouse_genomes_project 11 120441396 120455417 - MGP_CASTEiJ_P0033259 Qrich2 protein_coding protein_coding MGP_CASTEiJ_T0033260.1 MGP_CASTEiJ_G0018732.1 mouse_genomes_project 11 120444602 120447044 - Qrich2 protein_coding retained_intron MGP_CASTEiJ_T0003163.1 MGP_CASTEiJ_G0002934.1 mouse_genomes_project 11 98455049 98472551 - Hoxb5os antisense antisense MGP_CASTEiJ_T0003164.1 MGP_CASTEiJ_G0002934.1 mouse_genomes_project 11 98457500 98469108 - Hoxb5os antisense antisense MGP_CASTEiJ_T0006053.1 MGP_CASTEiJ_G0005067.1 mouse_genomes_project 11 32274468 32276124 + Gm12121 lincRNA lincRNA MGP_CASTEiJ_T0016468.1 MGP_CASTEiJ_G0014489.1 mouse_genomes_project 11 59231636 59238500 - 1700007J10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016469.1 MGP_CASTEiJ_G0014489.1 mouse_genomes_project 11 59231636 59247151 - 1700007J10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0027727.1 MGP_CASTEiJ_G0017421.1 mouse_genomes_project 11 27033339 27058974 - MGP_CASTEiJ_P0027727 Cfap36 protein_coding protein_coding MGP_CASTEiJ_T0027728.1 MGP_CASTEiJ_G0017421.1 mouse_genomes_project 11 27037590 27058912 - Cfap36 protein_coding retained_intron MGP_CASTEiJ_T0027729.1 MGP_CASTEiJ_G0017421.1 mouse_genomes_project 11 27042479 27058546 - MGP_CASTEiJ_P0027729 Cfap36 protein_coding protein_coding MGP_CASTEiJ_T0027730.1 MGP_CASTEiJ_G0017421.1 mouse_genomes_project 11 27055440 27058692 - Cfap36 protein_coding retained_intron MGP_CASTEiJ_T0027731.1 MGP_CASTEiJ_G0017421.1 mouse_genomes_project 11 27056349 27058816 - Cfap36 protein_coding retained_intron MGP_CASTEiJ_T0030306.1 MGP_CASTEiJ_G0018052.1 mouse_genomes_project 11 77869270 78044023 + MGP_CASTEiJ_P0030306 Ssh2 protein_coding protein_coding MGP_CASTEiJ_T0030307.1 MGP_CASTEiJ_G0018052.1 mouse_genomes_project 11 77869270 78109678 + MGP_CASTEiJ_P0030307 Ssh2 protein_coding protein_coding MGP_CASTEiJ_T0030308.1 MGP_CASTEiJ_G0018052.1 mouse_genomes_project 11 77932814 78109681 + MGP_CASTEiJ_P0030308 Ssh2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030309.1 MGP_CASTEiJ_G0018052.1 mouse_genomes_project 11 77996767 78000203 + Ssh2 protein_coding retained_intron MGP_CASTEiJ_T0030310.1 MGP_CASTEiJ_G0018052.1 mouse_genomes_project 11 77998294 78065640 + Ssh2 protein_coding processed_transcript MGP_CASTEiJ_T0030311.1 MGP_CASTEiJ_G0018052.1 mouse_genomes_project 11 77998296 78104972 + MGP_CASTEiJ_P0030311 Ssh2 protein_coding protein_coding MGP_CASTEiJ_T0030312.1 MGP_CASTEiJ_G0018052.1 mouse_genomes_project 11 77998302 78085159 + Ssh2 protein_coding retained_intron MGP_CASTEiJ_T0030313.1 MGP_CASTEiJ_G0018052.1 mouse_genomes_project 11 77998414 78109681 + MGP_CASTEiJ_P0030313 Ssh2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030314.1 MGP_CASTEiJ_G0018052.1 mouse_genomes_project 11 78042288 78044909 + Ssh2 protein_coding retained_intron MGP_CASTEiJ_T0029511.1 MGP_CASTEiJ_G0017863.1 mouse_genomes_project 11 69905763 69911583 - MGP_CASTEiJ_P0029511 Fgf11 protein_coding protein_coding MGP_CASTEiJ_T0029512.1 MGP_CASTEiJ_G0017863.1 mouse_genomes_project 11 69905768 69911724 - MGP_CASTEiJ_P0029512 Fgf11 protein_coding protein_coding MGP_CASTEiJ_T0033693.1 MGP_CASTEiJ_G0018810.1 mouse_genomes_project 11 124861564 124869876 + MGP_CASTEiJ_P0033693 Gcgr protein_coding protein_coding MGP_CASTEiJ_T0033694.1 MGP_CASTEiJ_G0018810.1 mouse_genomes_project 11 124861609 124869878 + Gcgr protein_coding processed_transcript MGP_CASTEiJ_T0033695.1 MGP_CASTEiJ_G0018810.1 mouse_genomes_project 11 124861639 124869875 + Gcgr protein_coding processed_transcript MGP_CASTEiJ_T0033696.1 MGP_CASTEiJ_G0018810.1 mouse_genomes_project 11 124861667 124873441 + MGP_CASTEiJ_P0033696 Gcgr protein_coding unknown_likely_coding MGP_CASTEiJ_T0033697.1 MGP_CASTEiJ_G0018810.1 mouse_genomes_project 11 124865548 124867596 + Gcgr protein_coding processed_transcript MGP_CASTEiJ_T0027942.1 MGP_CASTEiJ_G0017476.1 mouse_genomes_project 11 33870200 33898115 - MGP_CASTEiJ_P0027942 Rars protein_coding protein_coding MGP_CASTEiJ_T0027943.1 MGP_CASTEiJ_G0017476.1 mouse_genomes_project 11 33877686 33882101 - Rars protein_coding processed_transcript MGP_CASTEiJ_T0027944.1 MGP_CASTEiJ_G0017476.1 mouse_genomes_project 11 33879424 33883548 - Rars protein_coding retained_intron MGP_CASTEiJ_T0027945.1 MGP_CASTEiJ_G0017476.1 mouse_genomes_project 11 33883179 33888635 - Rars protein_coding retained_intron MGP_CASTEiJ_T0027946.1 MGP_CASTEiJ_G0017476.1 mouse_genomes_project 11 33889987 33898070 - Rars protein_coding processed_transcript MGP_CASTEiJ_T0033450.1 MGP_CASTEiJ_G0018768.1 mouse_genomes_project 11 122503653 122513462 - MGP_CASTEiJ_P0033450 BC100451 protein_coding protein_coding MGP_CASTEiJ_T0033451.1 MGP_CASTEiJ_G0018768.1 mouse_genomes_project 11 122503708 122505310 - MGP_CASTEiJ_P0033451 BC100451 protein_coding protein_coding MGP_CASTEiJ_T0031526.1 MGP_CASTEiJ_G0018338.1 mouse_genomes_project 11 99617446 99655319 + MGP_CASTEiJ_P0031526 Socs7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031527.1 MGP_CASTEiJ_G0018338.1 mouse_genomes_project 11 99617446 99655319 + MGP_CASTEiJ_P0031527 Socs7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031528.1 MGP_CASTEiJ_G0018338.1 mouse_genomes_project 11 99617632 99660390 + MGP_CASTEiJ_P0031528 Socs7 protein_coding protein_coding MGP_CASTEiJ_T0031529.1 MGP_CASTEiJ_G0018338.1 mouse_genomes_project 11 99637143 99638374 + Socs7 protein_coding processed_transcript MGP_CASTEiJ_T0030609.1 MGP_CASTEiJ_G0018115.1 mouse_genomes_project 11 81036287 81046631 - MGP_CASTEiJ_P0030609 Tefm protein_coding unknown_likely_coding MGP_CASTEiJ_T0030610.1 MGP_CASTEiJ_G0018115.1 mouse_genomes_project 11 81036296 81042171 - MGP_CASTEiJ_P0030610 Tefm protein_coding protein_coding MGP_CASTEiJ_T0030611.1 MGP_CASTEiJ_G0018115.1 mouse_genomes_project 11 81036296 81039908 - MGP_CASTEiJ_P0030611 Tefm protein_coding protein_coding MGP_CASTEiJ_T0030612.1 MGP_CASTEiJ_G0018115.1 mouse_genomes_project 11 81038135 81042139 - MGP_CASTEiJ_P0030612 Tefm protein_coding protein_coding MGP_CASTEiJ_T0031272.1 MGP_CASTEiJ_G0018273.1 mouse_genomes_project 11 96555534 96572899 + MGP_CASTEiJ_P0031272 Lrrc59 protein_coding protein_coding MGP_CASTEiJ_T0031273.1 MGP_CASTEiJ_G0018273.1 mouse_genomes_project 11 96555581 96561041 + Lrrc59 protein_coding retained_intron MGP_CASTEiJ_T0012136.1 MGP_CASTEiJ_G0010299.1 mouse_genomes_project 11 8557829 8558666 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012407.1 MGP_CASTEiJ_G0010570.1 mouse_genomes_project 11 114758926 114759624 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016416.1 MGP_CASTEiJ_G0014464.1 mouse_genomes_project 11 482557 490306 - Tug1 processed_transcript antisense MGP_CASTEiJ_T0016417.1 MGP_CASTEiJ_G0014464.1 mouse_genomes_project 11 482566 490314 - Tug1 processed_transcript antisense MGP_CASTEiJ_T0016418.1 MGP_CASTEiJ_G0014464.1 mouse_genomes_project 11 482566 491597 - Tug1 processed_transcript antisense MGP_CASTEiJ_T0016419.1 MGP_CASTEiJ_G0014464.1 mouse_genomes_project 11 489634 491827 - Tug1 processed_transcript antisense MGP_CASTEiJ_T0016420.1 MGP_CASTEiJ_G0014464.1 mouse_genomes_project 11 490845 492462 - Tug1 processed_transcript TEC MGP_CASTEiJ_T0027989.1 MGP_CASTEiJ_G0017485.1 mouse_genomes_project 11 40665407 40681372 - MGP_CASTEiJ_P0027989 Gabra6 protein_coding protein_coding MGP_CASTEiJ_T0027990.1 MGP_CASTEiJ_G0017485.1 mouse_genomes_project 11 40665408 40681374 - MGP_CASTEiJ_P0027990 Gabra6 protein_coding protein_coding MGP_CASTEiJ_T0027991.1 MGP_CASTEiJ_G0017485.1 mouse_genomes_project 11 40666230 40681395 - MGP_CASTEiJ_P0027991 Gabra6 protein_coding protein_coding MGP_CASTEiJ_T0033796.1 MGP_CASTEiJ_G0018829.1 mouse_genomes_project 11 125086318 125090801 - MGP_CASTEiJ_P0033796 Cbr2 protein_coding protein_coding MGP_CASTEiJ_T0033797.1 MGP_CASTEiJ_G0018829.1 mouse_genomes_project 11 125086333 125088946 - Cbr2 protein_coding retained_intron MGP_CASTEiJ_T0033798.1 MGP_CASTEiJ_G0018829.1 mouse_genomes_project 11 125088619 125090773 - MGP_CASTEiJ_P0033798 Cbr2 protein_coding protein_coding MGP_CASTEiJ_T0033799.1 MGP_CASTEiJ_G0018829.1 mouse_genomes_project 11 125088953 125090781 - Cbr2 protein_coding retained_intron MGP_CASTEiJ_T0030053.1 MGP_CASTEiJ_G0017997.1 mouse_genomes_project 11 74763438 74764525 + MGP_CASTEiJ_P0030053 protein_coding protein_coding MGP_CASTEiJ_T0033202.1 MGP_CASTEiJ_G0018721.1 mouse_genomes_project 11 120115750 120141304 - Fbf1 protein_coding processed_transcript MGP_CASTEiJ_T0033203.1 MGP_CASTEiJ_G0018721.1 mouse_genomes_project 11 120115750 120120609 - Fbf1 protein_coding processed_transcript MGP_CASTEiJ_T0033204.1 MGP_CASTEiJ_G0018721.1 mouse_genomes_project 11 120115750 120141677 - MGP_CASTEiJ_P0033204 Fbf1 protein_coding protein_coding MGP_CASTEiJ_T0033205.1 MGP_CASTEiJ_G0018721.1 mouse_genomes_project 11 120115751 120139229 - MGP_CASTEiJ_P0033205 Fbf1 protein_coding protein_coding MGP_CASTEiJ_T0033206.1 MGP_CASTEiJ_G0018721.1 mouse_genomes_project 11 120116711 120124245 - Fbf1 protein_coding processed_transcript MGP_CASTEiJ_T0033207.1 MGP_CASTEiJ_G0018721.1 mouse_genomes_project 11 120128259 120131030 - Fbf1 protein_coding processed_transcript MGP_CASTEiJ_T0033208.1 MGP_CASTEiJ_G0018721.1 mouse_genomes_project 11 120128290 120132390 - Fbf1 protein_coding processed_transcript MGP_CASTEiJ_T0033209.1 MGP_CASTEiJ_G0018721.1 mouse_genomes_project 11 120128626 120141678 - MGP_CASTEiJ_P0033209 Fbf1 protein_coding protein_coding MGP_CASTEiJ_T0033210.1 MGP_CASTEiJ_G0018721.1 mouse_genomes_project 11 120129515 120139198 - Fbf1 protein_coding processed_transcript MGP_CASTEiJ_T0033211.1 MGP_CASTEiJ_G0018721.1 mouse_genomes_project 11 120136643 120141690 - Fbf1 protein_coding processed_transcript MGP_CASTEiJ_T0033212.1 MGP_CASTEiJ_G0018721.1 mouse_genomes_project 11 120137995 120141672 - MGP_CASTEiJ_P0033212 Fbf1 protein_coding protein_coding MGP_CASTEiJ_T0033213.1 MGP_CASTEiJ_G0018721.1 mouse_genomes_project 11 120139097 120141289 - Fbf1 protein_coding retained_intron MGP_CASTEiJ_T0031381.1 MGP_CASTEiJ_G0018302.1 mouse_genomes_project 11 98088357 98140605 - MGP_CASTEiJ_P0031381 Igf2bp1 protein_coding protein_coding MGP_CASTEiJ_T0031382.1 MGP_CASTEiJ_G0018302.1 mouse_genomes_project 11 98094646 98100933 - Igf2bp1 protein_coding processed_transcript MGP_CASTEiJ_T0031383.1 MGP_CASTEiJ_G0018302.1 mouse_genomes_project 11 98106041 98115795 - Igf2bp1 protein_coding processed_transcript MGP_CASTEiJ_T0031384.1 MGP_CASTEiJ_G0018302.1 mouse_genomes_project 11 98106876 98115812 - Igf2bp1 protein_coding processed_transcript MGP_CASTEiJ_T0031385.1 MGP_CASTEiJ_G0018302.1 mouse_genomes_project 11 98111615 98115809 - Igf2bp1 protein_coding processed_transcript MGP_CASTEiJ_T0031314.1 MGP_CASTEiJ_G0018285.1 mouse_genomes_project 11 97107467 97141311 - MGP_CASTEiJ_P0031314 Itga3 protein_coding protein_coding MGP_CASTEiJ_T0031315.1 MGP_CASTEiJ_G0018285.1 mouse_genomes_project 11 97107467 97141224 - MGP_CASTEiJ_P0031315 Itga3 protein_coding protein_coding MGP_CASTEiJ_T0031316.1 MGP_CASTEiJ_G0018285.1 mouse_genomes_project 11 97107468 97133714 - MGP_CASTEiJ_P0031316 Itga3 protein_coding protein_coding MGP_CASTEiJ_T0031317.1 MGP_CASTEiJ_G0018285.1 mouse_genomes_project 11 97108527 97140935 - MGP_CASTEiJ_P0031317 Itga3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031318.1 MGP_CASTEiJ_G0018285.1 mouse_genomes_project 11 97116431 97119232 - Itga3 protein_coding retained_intron MGP_CASTEiJ_T0031319.1 MGP_CASTEiJ_G0018285.1 mouse_genomes_project 11 97121307 97125278 - Itga3 protein_coding retained_intron MGP_CASTEiJ_T0031320.1 MGP_CASTEiJ_G0018285.1 mouse_genomes_project 11 97126195 97141307 - MGP_CASTEiJ_P0031320 Itga3 protein_coding protein_coding MGP_CASTEiJ_T0027928.1 MGP_CASTEiJ_G0017471.1 mouse_genomes_project 11 32451143 32566693 + MGP_CASTEiJ_P0027928 Fam196b protein_coding protein_coding MGP_CASTEiJ_T0027929.1 MGP_CASTEiJ_G0017471.1 mouse_genomes_project 11 32451143 32566694 + MGP_CASTEiJ_P0027929 Fam196b protein_coding protein_coding MGP_CASTEiJ_T0033124.1 MGP_CASTEiJ_G0018707.1 mouse_genomes_project 11 119797809 119836597 + MGP_CASTEiJ_P0033124 Myo15b protein_coding unknown_likely_coding MGP_CASTEiJ_T0033125.1 MGP_CASTEiJ_G0018707.1 mouse_genomes_project 11 119797809 119836597 + MGP_CASTEiJ_P0033125 Myo15b protein_coding unknown_likely_coding MGP_CASTEiJ_T0033126.1 MGP_CASTEiJ_G0018707.1 mouse_genomes_project 11 119798040 119836588 + MGP_CASTEiJ_P0033126 Myo15b protein_coding protein_coding MGP_CASTEiJ_T0033127.1 MGP_CASTEiJ_G0018707.1 mouse_genomes_project 11 119818560 119821211 + Myo15b protein_coding processed_transcript MGP_CASTEiJ_T0033128.1 MGP_CASTEiJ_G0018707.1 mouse_genomes_project 11 119818578 119822314 + MGP_CASTEiJ_P0033128 Myo15b protein_coding protein_coding MGP_CASTEiJ_T0033129.1 MGP_CASTEiJ_G0018707.1 mouse_genomes_project 11 119821480 119829587 + MGP_CASTEiJ_P0033129 Myo15b protein_coding protein_coding MGP_CASTEiJ_T0033130.1 MGP_CASTEiJ_G0018707.1 mouse_genomes_project 11 119828577 119829588 + MGP_CASTEiJ_P0033130 Myo15b protein_coding protein_coding MGP_CASTEiJ_T0033131.1 MGP_CASTEiJ_G0018707.1 mouse_genomes_project 11 119828949 119836584 + Myo15b protein_coding retained_intron MGP_CASTEiJ_T0033132.1 MGP_CASTEiJ_G0018707.1 mouse_genomes_project 11 119829742 119836599 + MGP_CASTEiJ_P0033132 Myo15b protein_coding protein_coding MGP_CASTEiJ_T0033133.1 MGP_CASTEiJ_G0018707.1 mouse_genomes_project 11 119834240 119835171 + Myo15b protein_coding retained_intron MGP_CASTEiJ_T0099216.1 MGP_CASTEiJ_G0036129.1 mouse_genomes_project 11 12690486 12690593 + Gm24707 snRNA snRNA MGP_CASTEiJ_T0003061.1 MGP_CASTEiJ_G0002852.1 mouse_genomes_project 11 53976348 53982538 + Lyrm7os antisense antisense MGP_CASTEiJ_T0031814.1 MGP_CASTEiJ_G0018427.1 mouse_genomes_project 11 102433848 102434612 - MGP_CASTEiJ_P0031814 Gm11564 protein_coding protein_coding MGP_CASTEiJ_T0012387.1 MGP_CASTEiJ_G0010550.1 mouse_genomes_project 11 105535859 105536668 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033912.1 MGP_CASTEiJ_G0018854.1 mouse_genomes_project 11 125999385 126056920 - MGP_CASTEiJ_P0033912 B3gntl1 protein_coding protein_coding MGP_CASTEiJ_T0033913.1 MGP_CASTEiJ_G0018854.1 mouse_genomes_project 11 126000940 126056897 - MGP_CASTEiJ_P0033913 B3gntl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033914.1 MGP_CASTEiJ_G0018854.1 mouse_genomes_project 11 126010455 126056920 - MGP_CASTEiJ_P0033914 B3gntl1 protein_coding protein_coding MGP_CASTEiJ_T0031674.1 MGP_CASTEiJ_G0018372.1 mouse_genomes_project 11 100923880 100931464 + MGP_CASTEiJ_P0031674 Zpbp2 protein_coding protein_coding MGP_CASTEiJ_T0031675.1 MGP_CASTEiJ_G0018372.1 mouse_genomes_project 11 100923906 100931461 + MGP_CASTEiJ_P0031675 Zpbp2 protein_coding protein_coding MGP_CASTEiJ_T0031676.1 MGP_CASTEiJ_G0018372.1 mouse_genomes_project 11 100923933 100931455 + MGP_CASTEiJ_P0031676 Zpbp2 protein_coding protein_coding MGP_CASTEiJ_T0031677.1 MGP_CASTEiJ_G0018372.1 mouse_genomes_project 11 100923961 100931332 + MGP_CASTEiJ_P0031677 Zpbp2 protein_coding protein_coding MGP_CASTEiJ_T0031678.1 MGP_CASTEiJ_G0018372.1 mouse_genomes_project 11 100928224 100931184 + Zpbp2 protein_coding processed_transcript MGP_CASTEiJ_T0029165.1 MGP_CASTEiJ_G0017783.1 mouse_genomes_project 11 64859168 65023452 - MGP_CASTEiJ_P0029165 Arhgap44 protein_coding protein_coding MGP_CASTEiJ_T0029166.1 MGP_CASTEiJ_G0017783.1 mouse_genomes_project 11 64859169 65023395 - MGP_CASTEiJ_P0029166 Arhgap44 protein_coding protein_coding MGP_CASTEiJ_T0029167.1 MGP_CASTEiJ_G0017783.1 mouse_genomes_project 11 64859170 64916896 - MGP_CASTEiJ_P0029167 Arhgap44 protein_coding protein_coding MGP_CASTEiJ_T0029168.1 MGP_CASTEiJ_G0017783.1 mouse_genomes_project 11 64908661 65023062 - MGP_CASTEiJ_P0029168 Arhgap44 protein_coding protein_coding MGP_CASTEiJ_T0032931.1 MGP_CASTEiJ_G0018668.1 mouse_genomes_project 11 118727747 118743217 + MGP_CASTEiJ_P0032931 Cd300a protein_coding protein_coding MGP_CASTEiJ_T0032932.1 MGP_CASTEiJ_G0018668.1 mouse_genomes_project 11 118727747 118743217 + MGP_CASTEiJ_P0032932 Cd300a protein_coding protein_coding MGP_CASTEiJ_T0032933.1 MGP_CASTEiJ_G0018668.1 mouse_genomes_project 11 118728001 118731153 + Cd300a protein_coding processed_transcript MGP_CASTEiJ_T0012305.1 MGP_CASTEiJ_G0010468.1 mouse_genomes_project 11 71142634 71143021 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031407.1 MGP_CASTEiJ_G0018311.1 mouse_genomes_project 11 98449912 98454194 + MGP_CASTEiJ_P0031407 Hoxb7 protein_coding protein_coding MGP_CASTEiJ_T0031408.1 MGP_CASTEiJ_G0018311.1 mouse_genomes_project 11 98452008 98452733 + Hoxb7 protein_coding processed_transcript MGP_CASTEiJ_T0030045.1 MGP_CASTEiJ_G0017992.1 mouse_genomes_project 11 74609961 74610973 + MGP_CASTEiJ_P0030045 Olfr402 protein_coding protein_coding MGP_CASTEiJ_T0032490.1 MGP_CASTEiJ_G0018577.1 mouse_genomes_project 11 107121777 107167205 + MGP_CASTEiJ_P0032490 Crhr1 protein_coding protein_coding MGP_CASTEiJ_T0029972.1 MGP_CASTEiJ_G0017956.1 mouse_genomes_project 11 73400129 73417655 + MGP_CASTEiJ_P0029972 P2rx1 protein_coding protein_coding MGP_CASTEiJ_T0029973.1 MGP_CASTEiJ_G0017956.1 mouse_genomes_project 11 73400341 73416581 + MGP_CASTEiJ_P0029973 P2rx1 protein_coding protein_coding MGP_CASTEiJ_T0029974.1 MGP_CASTEiJ_G0017956.1 mouse_genomes_project 11 73412245 73417652 + P2rx1 protein_coding retained_intron MGP_CASTEiJ_T0031503.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99427560 99532587 - MGP_CASTEiJ_P0031503 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031504.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99463499 99532672 - MGP_CASTEiJ_P0031504 protein_coding protein_coding MGP_CASTEiJ_T0031505.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99463499 99532684 - MGP_CASTEiJ_P0031505 protein_coding protein_coding MGP_CASTEiJ_T0031506.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99463501 99532684 - MGP_CASTEiJ_P0031506 protein_coding protein_coding MGP_CASTEiJ_T0031507.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99464565 99470100 - protein_coding retained_intron MGP_CASTEiJ_T0031508.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99464590 99502309 - protein_coding retained_intron MGP_CASTEiJ_T0031509.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99464590 99532618 - MGP_CASTEiJ_P0031509 protein_coding protein_coding MGP_CASTEiJ_T0031510.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99464815 99470933 - protein_coding retained_intron MGP_CASTEiJ_T0031511.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99471174 99485378 - protein_coding retained_intron MGP_CASTEiJ_T0031512.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99485007 99487183 - protein_coding retained_intron MGP_CASTEiJ_T0031513.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99490230 99495543 - protein_coding retained_intron MGP_CASTEiJ_T0031514.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99492565 99502321 - protein_coding processed_transcript MGP_CASTEiJ_T0031515.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99492570 99503225 - MGP_CASTEiJ_P0031515 protein_coding protein_coding MGP_CASTEiJ_T0031516.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99495515 99519603 - MGP_CASTEiJ_P0031516 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031517.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99502403 99503588 - protein_coding retained_intron MGP_CASTEiJ_T0031518.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99503075 99532594 - MGP_CASTEiJ_P0031518 protein_coding protein_coding MGP_CASTEiJ_T0031519.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99504868 99532656 - MGP_CASTEiJ_P0031519 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031520.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99509455 99532684 - protein_coding retained_intron MGP_CASTEiJ_T0031521.1 MGP_CASTEiJ_G0018335.1 mouse_genomes_project 11 99510126 99519595 - MGP_CASTEiJ_P0031521 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027473.1 MGP_CASTEiJ_G0017366.1 mouse_genomes_project 11 13558330 13589831 + MGP_CASTEiJ_P0027473 Vstm2a protein_coding protein_coding MGP_CASTEiJ_T0027474.1 MGP_CASTEiJ_G0017366.1 mouse_genomes_project 11 13558409 13721692 + MGP_CASTEiJ_P0027474 Vstm2a protein_coding protein_coding MGP_CASTEiJ_T0027475.1 MGP_CASTEiJ_G0017366.1 mouse_genomes_project 11 13558646 13587733 + MGP_CASTEiJ_P0027475 Vstm2a protein_coding unknown_likely_coding MGP_CASTEiJ_T0003158.1 MGP_CASTEiJ_G0002930.1 mouse_genomes_project 11 97460760 97469869 - Gm29477 antisense antisense MGP_CASTEiJ_T0033837.1 MGP_CASTEiJ_G0018836.1 mouse_genomes_project 11 125336933 125367565 - MGP_CASTEiJ_P0033837 Csnk1d protein_coding protein_coding MGP_CASTEiJ_T0033838.1 MGP_CASTEiJ_G0018836.1 mouse_genomes_project 11 125336933 125367327 - MGP_CASTEiJ_P0033838 Csnk1d protein_coding protein_coding MGP_CASTEiJ_T0033839.1 MGP_CASTEiJ_G0018836.1 mouse_genomes_project 11 125338832 125340871 - Csnk1d protein_coding processed_transcript MGP_CASTEiJ_T0033840.1 MGP_CASTEiJ_G0018836.1 mouse_genomes_project 11 125338957 125346774 - Csnk1d protein_coding processed_transcript MGP_CASTEiJ_T0033841.1 MGP_CASTEiJ_G0018836.1 mouse_genomes_project 11 125342107 125367320 - MGP_CASTEiJ_P0033841 Csnk1d protein_coding unknown_likely_coding MGP_CASTEiJ_T0033842.1 MGP_CASTEiJ_G0018836.1 mouse_genomes_project 11 125342761 125343211 - Csnk1d protein_coding processed_transcript MGP_CASTEiJ_T0033843.1 MGP_CASTEiJ_G0018836.1 mouse_genomes_project 11 125347624 125367106 - MGP_CASTEiJ_P0033843 Csnk1d protein_coding protein_coding MGP_CASTEiJ_T0033844.1 MGP_CASTEiJ_G0018836.1 mouse_genomes_project 11 125347642 125367222 - MGP_CASTEiJ_P0033844 Csnk1d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033845.1 MGP_CASTEiJ_G0018836.1 mouse_genomes_project 11 125357964 125367286 - Csnk1d protein_coding retained_intron MGP_CASTEiJ_T0032386.1 MGP_CASTEiJ_G0018554.1 mouse_genomes_project 11 105791366 105804479 - MGP_CASTEiJ_P0032386 Gfap protein_coding protein_coding MGP_CASTEiJ_T0032387.1 MGP_CASTEiJ_G0018554.1 mouse_genomes_project 11 105795893 105804548 - MGP_CASTEiJ_P0032387 Gfap protein_coding protein_coding MGP_CASTEiJ_T0032388.1 MGP_CASTEiJ_G0018554.1 mouse_genomes_project 11 105801827 105808269 - Gfap protein_coding processed_transcript MGP_CASTEiJ_T0033184.1 MGP_CASTEiJ_G0018718.1 mouse_genomes_project 11 120074238 120079219 - MGP_CASTEiJ_P0033184 Trim47 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033185.1 MGP_CASTEiJ_G0018718.1 mouse_genomes_project 11 120074238 120079219 - MGP_CASTEiJ_P0033185 Trim47 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033186.1 MGP_CASTEiJ_G0018718.1 mouse_genomes_project 11 120074245 120076611 - Trim47 protein_coding processed_transcript MGP_CASTEiJ_T0033187.1 MGP_CASTEiJ_G0018718.1 mouse_genomes_project 11 120074245 120078733 - MGP_CASTEiJ_P0033187 Trim47 protein_coding protein_coding MGP_CASTEiJ_T0033188.1 MGP_CASTEiJ_G0018718.1 mouse_genomes_project 11 120074245 120078742 - MGP_CASTEiJ_P0033188 Trim47 protein_coding protein_coding MGP_CASTEiJ_T0033189.1 MGP_CASTEiJ_G0018718.1 mouse_genomes_project 11 120074702 120075577 - Trim47 protein_coding processed_transcript MGP_CASTEiJ_T0033190.1 MGP_CASTEiJ_G0018718.1 mouse_genomes_project 11 120074832 120076231 - Trim47 protein_coding processed_transcript MGP_CASTEiJ_T0033191.1 MGP_CASTEiJ_G0018718.1 mouse_genomes_project 11 120074885 120076526 - Trim47 protein_coding processed_transcript MGP_CASTEiJ_T0033192.1 MGP_CASTEiJ_G0018718.1 mouse_genomes_project 11 120076301 120100276 - Trim47 protein_coding processed_transcript MGP_CASTEiJ_T0009496.1 MGP_CASTEiJ_G0007684.1 mouse_genomes_project 11 100347151 100347231 + Gm27597 miRNA miRNA MGP_CASTEiJ_T0031869.1 MGP_CASTEiJ_G0018458.1 mouse_genomes_project 11 103071882 103078974 - MGP_CASTEiJ_P0031869 P3h4 protein_coding protein_coding MGP_CASTEiJ_T0031870.1 MGP_CASTEiJ_G0018458.1 mouse_genomes_project 11 103072790 103076017 - MGP_CASTEiJ_P0031870 P3h4 protein_coding protein_coding MGP_CASTEiJ_T0030597.1 MGP_CASTEiJ_G0018113.1 mouse_genomes_project 11 80933812 80973103 - MGP_CASTEiJ_P0030597 Crlf3 protein_coding protein_coding MGP_CASTEiJ_T0030598.1 MGP_CASTEiJ_G0018113.1 mouse_genomes_project 11 80933812 80973111 - MGP_CASTEiJ_P0030598 Crlf3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030599.1 MGP_CASTEiJ_G0018113.1 mouse_genomes_project 11 80934804 80973086 - MGP_CASTEiJ_P0030599 Crlf3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030600.1 MGP_CASTEiJ_G0018113.1 mouse_genomes_project 11 80934804 80973069 - MGP_CASTEiJ_P0030600 Crlf3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030601.1 MGP_CASTEiJ_G0018113.1 mouse_genomes_project 11 80943572 80973093 - Crlf3 protein_coding processed_transcript MGP_CASTEiJ_T0030602.1 MGP_CASTEiJ_G0018113.1 mouse_genomes_project 11 80943694 80945377 - Crlf3 protein_coding retained_intron MGP_CASTEiJ_T0030603.1 MGP_CASTEiJ_G0018113.1 mouse_genomes_project 11 80946792 80973018 - MGP_CASTEiJ_P0030603 Crlf3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030604.1 MGP_CASTEiJ_G0018113.1 mouse_genomes_project 11 80950187 80973095 - Crlf3 protein_coding retained_intron MGP_CASTEiJ_T0028595.1 MGP_CASTEiJ_G0017642.1 mouse_genomes_project 11 54302263 54330644 - MGP_CASTEiJ_P0028595 Slc36a3 protein_coding protein_coding MGP_CASTEiJ_T0028596.1 MGP_CASTEiJ_G0017642.1 mouse_genomes_project 11 54302273 54330622 - MGP_CASTEiJ_P0028596 Slc36a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028597.1 MGP_CASTEiJ_G0017642.1 mouse_genomes_project 11 54328419 54330644 - MGP_CASTEiJ_P0028597 Slc36a3 protein_coding protein_coding MGP_CASTEiJ_T0032392.1 MGP_CASTEiJ_G0018557.1 mouse_genomes_project 11 105913958 105936398 - MGP_CASTEiJ_P0032392 Dcakd protein_coding protein_coding MGP_CASTEiJ_T0032393.1 MGP_CASTEiJ_G0018557.1 mouse_genomes_project 11 105913960 105917488 - Dcakd protein_coding retained_intron MGP_CASTEiJ_T0032394.1 MGP_CASTEiJ_G0018557.1 mouse_genomes_project 11 105919588 105949624 - MGP_CASTEiJ_P0032394 Dcakd protein_coding protein_coding MGP_CASTEiJ_T0032395.1 MGP_CASTEiJ_G0018557.1 mouse_genomes_project 11 105948303 105949583 - Dcakd protein_coding retained_intron MGP_CASTEiJ_T0032396.1 MGP_CASTEiJ_G0018557.1 mouse_genomes_project 11 105948577 105949653 - Dcakd protein_coding processed_transcript MGP_CASTEiJ_T0027780.1 MGP_CASTEiJ_G0017430.1 mouse_genomes_project 11 27960661 27964517 - Sptbn1 protein_coding retained_intron MGP_CASTEiJ_T0027781.1 MGP_CASTEiJ_G0017430.1 mouse_genomes_project 11 27961258 28149860 - MGP_CASTEiJ_P0027781 Sptbn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027782.1 MGP_CASTEiJ_G0017430.1 mouse_genomes_project 11 27961258 28149860 - MGP_CASTEiJ_P0027782 Sptbn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027783.1 MGP_CASTEiJ_G0017430.1 mouse_genomes_project 11 27961598 28149874 - MGP_CASTEiJ_P0027783 Sptbn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027784.1 MGP_CASTEiJ_G0017430.1 mouse_genomes_project 11 27962782 27966880 - Sptbn1 protein_coding retained_intron MGP_CASTEiJ_T0027785.1 MGP_CASTEiJ_G0017430.1 mouse_genomes_project 11 27968054 28078339 - MGP_CASTEiJ_P0027785 Sptbn1 protein_coding protein_coding MGP_CASTEiJ_T0027786.1 MGP_CASTEiJ_G0017430.1 mouse_genomes_project 11 27977262 27978756 - Sptbn1 protein_coding retained_intron MGP_CASTEiJ_T0027787.1 MGP_CASTEiJ_G0017430.1 mouse_genomes_project 11 27977339 28149082 - MGP_CASTEiJ_P0027787 Sptbn1 protein_coding protein_coding MGP_CASTEiJ_T0027788.1 MGP_CASTEiJ_G0017430.1 mouse_genomes_project 11 28096602 28150043 - Sptbn1 protein_coding retained_intron MGP_CASTEiJ_T0033897.1 MGP_CASTEiJ_G0018850.1 mouse_genomes_project 11 125799053 125808910 + MGP_CASTEiJ_P0033897 Fn3krp protein_coding protein_coding MGP_CASTEiJ_T0033898.1 MGP_CASTEiJ_G0018850.1 mouse_genomes_project 11 125799187 125808913 + MGP_CASTEiJ_P0033898 Fn3krp protein_coding unknown_likely_coding MGP_CASTEiJ_T0033899.1 MGP_CASTEiJ_G0018850.1 mouse_genomes_project 11 125799187 125808913 + MGP_CASTEiJ_P0033899 Fn3krp protein_coding unknown_likely_coding MGP_CASTEiJ_T0027314.1 MGP_CASTEiJ_G0017331.1 mouse_genomes_project 11 3080956 3175858 - MGP_CASTEiJ_P0027314 Nudcd3 protein_coding protein_coding MGP_CASTEiJ_T0027315.1 MGP_CASTEiJ_G0017331.1 mouse_genomes_project 11 3081251 3094636 - Nudcd3 protein_coding processed_transcript MGP_CASTEiJ_T0027316.1 MGP_CASTEiJ_G0017331.1 mouse_genomes_project 11 3081723 3166604 - MGP_CASTEiJ_P0027316 Nudcd3 protein_coding protein_coding MGP_CASTEiJ_T0027317.1 MGP_CASTEiJ_G0017331.1 mouse_genomes_project 11 3098166 3166604 - Nudcd3 protein_coding retained_intron MGP_CASTEiJ_T0006150.1 MGP_CASTEiJ_G0005142.1 mouse_genomes_project 11 90621275 90624565 - Gm11496 lincRNA lincRNA MGP_CASTEiJ_T0006174.1 MGP_CASTEiJ_G0005159.1 mouse_genomes_project 11 105479472 105481130 - Gm11636 lincRNA lincRNA MGP_CASTEiJ_T0031802.1 MGP_CASTEiJ_G0018415.1 mouse_genomes_project 11 102169451 102170490 - MGP_CASTEiJ_P0031802 Gm11937 protein_coding protein_coding MGP_CASTEiJ_T0012216.1 MGP_CASTEiJ_G0010379.1 mouse_genomes_project 11 34071329 34072064 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003166.1 MGP_CASTEiJ_G0002936.1 mouse_genomes_project 11 98510505 98522110 - Hoxb3os antisense antisense MGP_CASTEiJ_T0003167.1 MGP_CASTEiJ_G0002936.1 mouse_genomes_project 11 98512917 98515369 - Hoxb3os antisense antisense MGP_CASTEiJ_T0032957.1 MGP_CASTEiJ_G0018678.1 mouse_genomes_project 11 119042896 119049065 - MGP_CASTEiJ_P0032957 Nat9 protein_coding protein_coding MGP_CASTEiJ_T0032958.1 MGP_CASTEiJ_G0018678.1 mouse_genomes_project 11 119042896 119049030 - MGP_CASTEiJ_P0032958 Nat9 protein_coding protein_coding MGP_CASTEiJ_T0032959.1 MGP_CASTEiJ_G0018678.1 mouse_genomes_project 11 119042896 119049007 - MGP_CASTEiJ_P0032959 Nat9 protein_coding protein_coding MGP_CASTEiJ_T0032960.1 MGP_CASTEiJ_G0018678.1 mouse_genomes_project 11 119042896 119049519 - MGP_CASTEiJ_P0032960 Nat9 protein_coding protein_coding MGP_CASTEiJ_T0032961.1 MGP_CASTEiJ_G0018678.1 mouse_genomes_project 11 119044578 119048937 - Nat9 protein_coding processed_transcript MGP_CASTEiJ_T0032962.1 MGP_CASTEiJ_G0018678.1 mouse_genomes_project 11 119044682 119048756 - Nat9 protein_coding processed_transcript MGP_CASTEiJ_T0032963.1 MGP_CASTEiJ_G0018678.1 mouse_genomes_project 11 119044872 119049517 - Nat9 protein_coding processed_transcript MGP_CASTEiJ_T0032964.1 MGP_CASTEiJ_G0018678.1 mouse_genomes_project 11 119044873 119049534 - Nat9 protein_coding processed_transcript MGP_CASTEiJ_T0032965.1 MGP_CASTEiJ_G0018678.1 mouse_genomes_project 11 119045056 119048951 - Nat9 protein_coding processed_transcript MGP_CASTEiJ_T0012161.1 MGP_CASTEiJ_G0010324.1 mouse_genomes_project 11 17122616 17123453 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033864.1 MGP_CASTEiJ_G0018843.1 mouse_genomes_project 11 125561922 125593952 - MGP_CASTEiJ_P0033864 Ogfod3 protein_coding protein_coding MGP_CASTEiJ_T0006146.1 MGP_CASTEiJ_G0005140.1 mouse_genomes_project 11 90314047 90318003 + C030037D09Rik lincRNA lincRNA MGP_CASTEiJ_T0006147.1 MGP_CASTEiJ_G0005140.1 mouse_genomes_project 11 90314206 90326471 + C030037D09Rik lincRNA lincRNA MGP_CASTEiJ_T0006148.1 MGP_CASTEiJ_G0005140.1 mouse_genomes_project 11 90315891 90319577 + C030037D09Rik lincRNA lincRNA MGP_CASTEiJ_T0009495.1 MGP_CASTEiJ_G0007683.1 mouse_genomes_project 11 100256321 100256391 - Gm22461 miRNA miRNA MGP_CASTEiJ_T0030229.1 MGP_CASTEiJ_G0018035.1 mouse_genomes_project 11 76714302 76847798 - Glod4 protein_coding retained_intron MGP_CASTEiJ_T0030241.1 MGP_CASTEiJ_G0018035.1 mouse_genomes_project 11 76812337 76847786 - MGP_CASTEiJ_P0030241 Glod4 protein_coding protein_coding MGP_CASTEiJ_T0030245.1 MGP_CASTEiJ_G0018035.1 mouse_genomes_project 11 76823967 76847848 - MGP_CASTEiJ_P0030245 Glod4 protein_coding protein_coding MGP_CASTEiJ_T0030246.1 MGP_CASTEiJ_G0018035.1 mouse_genomes_project 11 76824064 76847774 - MGP_CASTEiJ_P0030246 Glod4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030247.1 MGP_CASTEiJ_G0018035.1 mouse_genomes_project 11 76824251 76847582 - MGP_CASTEiJ_P0030247 Glod4 protein_coding protein_coding MGP_CASTEiJ_T0030248.1 MGP_CASTEiJ_G0018035.1 mouse_genomes_project 11 76837399 76847733 - MGP_CASTEiJ_P0030248 Glod4 protein_coding protein_coding MGP_CASTEiJ_T0030249.1 MGP_CASTEiJ_G0018035.1 mouse_genomes_project 11 76838416 76843731 - Glod4 protein_coding retained_intron MGP_CASTEiJ_T0030250.1 MGP_CASTEiJ_G0018035.1 mouse_genomes_project 11 76838688 76847792 - MGP_CASTEiJ_P0030250 Glod4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030251.1 MGP_CASTEiJ_G0018035.1 mouse_genomes_project 11 76841870 76847761 - MGP_CASTEiJ_P0030251 Glod4 protein_coding protein_coding MGP_CASTEiJ_T0029169.1 MGP_CASTEiJ_G0017784.1 mouse_genomes_project 11 65012315 65020379 - MGP_CASTEiJ_P0029169 1700086D15Rik protein_coding protein_coding MGP_CASTEiJ_T0029170.1 MGP_CASTEiJ_G0017784.1 mouse_genomes_project 11 65012315 65020380 - MGP_CASTEiJ_P0029170 1700086D15Rik protein_coding protein_coding MGP_CASTEiJ_T0006006.1 MGP_CASTEiJ_G0005027.1 mouse_genomes_project 11 1139267 1147178 + Gm11959 lincRNA lincRNA MGP_CASTEiJ_T0012379.1 MGP_CASTEiJ_G0010542.1 mouse_genomes_project 11 102881169 102881526 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028700.1 MGP_CASTEiJ_G0017681.1 mouse_genomes_project 11 57975477 57983340 - MGP_CASTEiJ_P0028700 2210407C18Rik protein_coding protein_coding MGP_CASTEiJ_T0028701.1 MGP_CASTEiJ_G0017681.1 mouse_genomes_project 11 57975482 57980769 - MGP_CASTEiJ_P0028701 2210407C18Rik protein_coding protein_coding MGP_CASTEiJ_T0028702.1 MGP_CASTEiJ_G0017681.1 mouse_genomes_project 11 57979562 57980762 - 2210407C18Rik protein_coding processed_transcript MGP_CASTEiJ_T0006077.1 MGP_CASTEiJ_G0005088.1 mouse_genomes_project 11 51069668 51072917 - 9430098F02Rik lincRNA lincRNA MGP_CASTEiJ_T0032207.1 MGP_CASTEiJ_G0018527.1 mouse_genomes_project 11 104950283 104954244 + Nags protein_coding processed_transcript MGP_CASTEiJ_T0032208.1 MGP_CASTEiJ_G0018527.1 mouse_genomes_project 11 104950319 104954244 + MGP_CASTEiJ_P0032208 Nags protein_coding protein_coding MGP_CASTEiJ_T0032209.1 MGP_CASTEiJ_G0018527.1 mouse_genomes_project 11 104951136 104954244 + Nags protein_coding processed_transcript MGP_CASTEiJ_T0028970.1 MGP_CASTEiJ_G0017747.1 mouse_genomes_project 11 60970029 61007708 - MGP_CASTEiJ_P0028970 Slc47a1 protein_coding protein_coding MGP_CASTEiJ_T0028971.1 MGP_CASTEiJ_G0017747.1 mouse_genomes_project 11 60970030 61007691 - MGP_CASTEiJ_P0028971 Slc47a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028972.1 MGP_CASTEiJ_G0017747.1 mouse_genomes_project 11 60989406 60993922 - Slc47a1 protein_coding processed_transcript MGP_CASTEiJ_T0028973.1 MGP_CASTEiJ_G0017747.1 mouse_genomes_project 11 60989583 61007972 - MGP_CASTEiJ_P0028973 Slc47a1 protein_coding protein_coding MGP_CASTEiJ_T0012139.1 MGP_CASTEiJ_G0010302.1 mouse_genomes_project 11 11433792 11434171 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027129.1 MGP_CASTEiJ_G0017293.1 mouse_genomes_project 11 1018502 1040844 + MGP_CASTEiJ_P0027129 Sf3a1 protein_coding protein_coding MGP_CASTEiJ_T0027130.1 MGP_CASTEiJ_G0017293.1 mouse_genomes_project 11 1018507 1031438 + Sf3a1 protein_coding processed_transcript MGP_CASTEiJ_T0027131.1 MGP_CASTEiJ_G0017293.1 mouse_genomes_project 11 1018507 1030285 + Sf3a1 protein_coding retained_intron MGP_CASTEiJ_T0027132.1 MGP_CASTEiJ_G0017293.1 mouse_genomes_project 11 1035838 1037711 + Sf3a1 protein_coding retained_intron MGP_CASTEiJ_T0031871.1 MGP_CASTEiJ_G0018459.1 mouse_genomes_project 11 103079824 103089649 + MGP_CASTEiJ_P0031871 Fkbp10 protein_coding protein_coding MGP_CASTEiJ_T0031872.1 MGP_CASTEiJ_G0018459.1 mouse_genomes_project 11 103079893 103088937 + MGP_CASTEiJ_P0031872 Fkbp10 protein_coding protein_coding MGP_CASTEiJ_T0031873.1 MGP_CASTEiJ_G0018459.1 mouse_genomes_project 11 103079972 103086914 + MGP_CASTEiJ_P0031873 Fkbp10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031874.1 MGP_CASTEiJ_G0018459.1 mouse_genomes_project 11 103085248 103086521 + Fkbp10 protein_coding retained_intron MGP_CASTEiJ_T0031877.1 MGP_CASTEiJ_G0018459.1 mouse_genomes_project 11 103087862 103089125 + Fkbp10 protein_coding retained_intron MGP_CASTEiJ_T0032406.1 MGP_CASTEiJ_G0018560.1 mouse_genomes_project 11 106014085 106028381 + MGP_CASTEiJ_P0032406 Acbd4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032407.1 MGP_CASTEiJ_G0018560.1 mouse_genomes_project 11 106014085 106028378 + MGP_CASTEiJ_P0032407 Acbd4 protein_coding protein_coding MGP_CASTEiJ_T0032408.1 MGP_CASTEiJ_G0018560.1 mouse_genomes_project 11 106014089 106016422 + Acbd4 protein_coding processed_transcript MGP_CASTEiJ_T0032409.1 MGP_CASTEiJ_G0018560.1 mouse_genomes_project 11 106014089 106017791 + MGP_CASTEiJ_P0032409 Acbd4 protein_coding protein_coding MGP_CASTEiJ_T0032410.1 MGP_CASTEiJ_G0018560.1 mouse_genomes_project 11 106014091 106028380 + MGP_CASTEiJ_P0032410 Acbd4 protein_coding protein_coding MGP_CASTEiJ_T0032411.1 MGP_CASTEiJ_G0018560.1 mouse_genomes_project 11 106014112 106015786 + Acbd4 protein_coding retained_intron MGP_CASTEiJ_T0032412.1 MGP_CASTEiJ_G0018560.1 mouse_genomes_project 11 106014115 106016580 + MGP_CASTEiJ_P0032412 Acbd4 protein_coding protein_coding MGP_CASTEiJ_T0032413.1 MGP_CASTEiJ_G0018560.1 mouse_genomes_project 11 106014129 106015624 + Acbd4 protein_coding retained_intron MGP_CASTEiJ_T0032414.1 MGP_CASTEiJ_G0018560.1 mouse_genomes_project 11 106015421 106017865 + MGP_CASTEiJ_P0032414 Acbd4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032415.1 MGP_CASTEiJ_G0018560.1 mouse_genomes_project 11 106015474 106017850 + Acbd4 protein_coding processed_transcript MGP_CASTEiJ_T0032416.1 MGP_CASTEiJ_G0018560.1 mouse_genomes_project 11 106015476 106017258 + MGP_CASTEiJ_P0032416 Acbd4 protein_coding protein_coding MGP_CASTEiJ_T0032417.1 MGP_CASTEiJ_G0018560.1 mouse_genomes_project 11 106015508 106016499 + Acbd4 protein_coding retained_intron MGP_CASTEiJ_T0032418.1 MGP_CASTEiJ_G0018560.1 mouse_genomes_project 11 106015652 106016894 + Acbd4 protein_coding retained_intron MGP_CASTEiJ_T0032419.1 MGP_CASTEiJ_G0018560.1 mouse_genomes_project 11 106017116 106028134 + Acbd4 protein_coding retained_intron MGP_CASTEiJ_T0032420.1 MGP_CASTEiJ_G0018560.1 mouse_genomes_project 11 106018584 106027920 + Acbd4 protein_coding processed_transcript MGP_CASTEiJ_T0032421.1 MGP_CASTEiJ_G0018560.1 mouse_genomes_project 11 106018605 106028378 + Acbd4 protein_coding processed_transcript MGP_CASTEiJ_T0029905.1 MGP_CASTEiJ_G0017941.1 mouse_genomes_project 11 72571500 72575360 - MGP_CASTEiJ_P0029905 Med31 protein_coding protein_coding MGP_CASTEiJ_T0029906.1 MGP_CASTEiJ_G0017941.1 mouse_genomes_project 11 72573003 72574833 - Med31 protein_coding retained_intron MGP_CASTEiJ_T0100450.1 MGP_CASTEiJ_G0037363.1 mouse_genomes_project 11 69766390 69766534 - Gm22988 snoRNA snoRNA MGP_CASTEiJ_T0028037.1 MGP_CASTEiJ_G0017499.1 mouse_genomes_project 11 42970752 42986508 - MGP_CASTEiJ_P0028037 Ublcp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028038.1 MGP_CASTEiJ_G0017499.1 mouse_genomes_project 11 42971735 42980012 - Ublcp1 protein_coding processed_transcript MGP_CASTEiJ_T0028039.1 MGP_CASTEiJ_G0017499.1 mouse_genomes_project 11 42972439 42977514 - Ublcp1 protein_coding processed_transcript MGP_CASTEiJ_T0028040.1 MGP_CASTEiJ_G0017499.1 mouse_genomes_project 11 42981615 42983088 - Ublcp1 protein_coding processed_transcript MGP_CASTEiJ_T0029411.1 MGP_CASTEiJ_G0017838.1 mouse_genomes_project 11 69426900 69432231 + MGP_CASTEiJ_P0029411 Gm17305 protein_coding protein_coding MGP_CASTEiJ_T0009403.1 MGP_CASTEiJ_G0007591.1 mouse_genomes_project 11 1796478 1796536 + Mir6918 miRNA miRNA MGP_CASTEiJ_T0012269.1 MGP_CASTEiJ_G0010432.1 mouse_genomes_project 11 58400757 58401222 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031736.1 MGP_CASTEiJ_G0018385.1 mouse_genomes_project 11 101365118 101395654 + MGP_CASTEiJ_P0031736 Wipf2 protein_coding protein_coding MGP_CASTEiJ_T0031737.1 MGP_CASTEiJ_G0018385.1 mouse_genomes_project 11 101365118 101408334 + MGP_CASTEiJ_P0031737 Wipf2 protein_coding protein_coding MGP_CASTEiJ_T0031738.1 MGP_CASTEiJ_G0018385.1 mouse_genomes_project 11 101365564 101396196 + Wipf2 protein_coding retained_intron MGP_CASTEiJ_T0031739.1 MGP_CASTEiJ_G0018385.1 mouse_genomes_project 11 101394530 101395452 + Wipf2 protein_coding retained_intron MGP_CASTEiJ_T0032534.1 MGP_CASTEiJ_G0018586.1 mouse_genomes_project 11 108183508 108197565 + MGP_CASTEiJ_P0032534 Mettl2 protein_coding protein_coding MGP_CASTEiJ_T0032535.1 MGP_CASTEiJ_G0018586.1 mouse_genomes_project 11 108183562 108197565 + Mettl2 protein_coding processed_transcript MGP_CASTEiJ_T0032536.1 MGP_CASTEiJ_G0018586.1 mouse_genomes_project 11 108189634 108196164 + Mettl2 protein_coding processed_transcript MGP_CASTEiJ_T0032537.1 MGP_CASTEiJ_G0018586.1 mouse_genomes_project 11 108189645 108192848 + Mettl2 protein_coding processed_transcript MGP_CASTEiJ_T0032538.1 MGP_CASTEiJ_G0018586.1 mouse_genomes_project 11 108194710 108197565 + Mettl2 protein_coding processed_transcript MGP_CASTEiJ_T0006190.1 MGP_CASTEiJ_G0005173.1 mouse_genomes_project 11 116676695 116843428 - 2610035D17Rik lincRNA lincRNA MGP_CASTEiJ_T0006191.1 MGP_CASTEiJ_G0005173.1 mouse_genomes_project 11 116676695 116813497 - 2610035D17Rik lincRNA lincRNA MGP_CASTEiJ_T0006192.1 MGP_CASTEiJ_G0005173.1 mouse_genomes_project 11 116676695 116843412 - 2610035D17Rik lincRNA lincRNA MGP_CASTEiJ_T0006193.1 MGP_CASTEiJ_G0005173.1 mouse_genomes_project 11 116677317 116813497 - 2610035D17Rik lincRNA lincRNA MGP_CASTEiJ_T0012339.1 MGP_CASTEiJ_G0010502.1 mouse_genomes_project 11 85039908 85040503 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031530.1 MGP_CASTEiJ_G0018339.1 mouse_genomes_project 11 99682206 99774369 + MGP_CASTEiJ_P0031530 Arhgap23 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031531.1 MGP_CASTEiJ_G0018339.1 mouse_genomes_project 11 99682206 99774369 + MGP_CASTEiJ_P0031531 Arhgap23 protein_coding protein_coding MGP_CASTEiJ_T0031532.1 MGP_CASTEiJ_G0018339.1 mouse_genomes_project 11 99682342 99775608 + MGP_CASTEiJ_P0031532 Arhgap23 protein_coding protein_coding MGP_CASTEiJ_T0031533.1 MGP_CASTEiJ_G0018339.1 mouse_genomes_project 11 99682414 99763426 + MGP_CASTEiJ_P0031533 Arhgap23 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031534.1 MGP_CASTEiJ_G0018339.1 mouse_genomes_project 11 99704505 99712489 + Arhgap23 protein_coding processed_transcript MGP_CASTEiJ_T0031535.1 MGP_CASTEiJ_G0018339.1 mouse_genomes_project 11 99721933 99775608 + MGP_CASTEiJ_P0031535 Arhgap23 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031537.1 MGP_CASTEiJ_G0018339.1 mouse_genomes_project 11 99762884 99775604 + MGP_CASTEiJ_P0031537 Arhgap23 protein_coding protein_coding MGP_CASTEiJ_T0100443.1 MGP_CASTEiJ_G0037356.1 mouse_genomes_project 11 62320070 62320142 + Snord49b snoRNA snoRNA MGP_CASTEiJ_T0031363.1 MGP_CASTEiJ_G0018297.1 mouse_genomes_project 11 97838127 97841257 + MGP_CASTEiJ_P0031363 B130006D01Rik protein_coding protein_coding MGP_CASTEiJ_T0012372.1 MGP_CASTEiJ_G0010535.1 mouse_genomes_project 11 100283991 100284435 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030784.1 MGP_CASTEiJ_G0018166.1 mouse_genomes_project 11 84852679 84854767 + MGP_CASTEiJ_P0030784 Ccl4 protein_coding protein_coding MGP_CASTEiJ_T0028193.1 MGP_CASTEiJ_G0017548.1 mouse_genomes_project 11 48388241 48389742 + MGP_CASTEiJ_P0028193 Scgb3a1 protein_coding protein_coding MGP_CASTEiJ_T0028194.1 MGP_CASTEiJ_G0017548.1 mouse_genomes_project 11 48388241 48389742 + MGP_CASTEiJ_P0028194 Scgb3a1 protein_coding protein_coding MGP_CASTEiJ_T0099283.1 MGP_CASTEiJ_G0036196.1 mouse_genomes_project 11 109919113 109919220 - Gm25889 snRNA snRNA MGP_CASTEiJ_T0030782.1 MGP_CASTEiJ_G0018164.1 mouse_genomes_project 11 84835086 84835663 - MGP_CASTEiJ_P0030782 Rpl9-ps1 protein_coding protein_coding MGP_CASTEiJ_T0030876.1 MGP_CASTEiJ_G0018187.1 mouse_genomes_project 11 86301361 86470340 - MGP_CASTEiJ_P0030876 Usp32 protein_coding protein_coding MGP_CASTEiJ_T0030877.1 MGP_CASTEiJ_G0018187.1 mouse_genomes_project 11 86302568 86355854 - MGP_CASTEiJ_P0030877 Usp32 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030878.1 MGP_CASTEiJ_G0018187.1 mouse_genomes_project 11 86303191 86306043 - MGP_CASTEiJ_P0030878 Usp32 protein_coding protein_coding MGP_CASTEiJ_T0030879.1 MGP_CASTEiJ_G0018187.1 mouse_genomes_project 11 86353886 86369203 - MGP_CASTEiJ_P0030879 Usp32 protein_coding protein_coding MGP_CASTEiJ_T0030880.1 MGP_CASTEiJ_G0018187.1 mouse_genomes_project 11 86363243 86373450 - MGP_CASTEiJ_P0030880 Usp32 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030881.1 MGP_CASTEiJ_G0018187.1 mouse_genomes_project 11 86378267 86384624 - Usp32 protein_coding retained_intron MGP_CASTEiJ_T0030882.1 MGP_CASTEiJ_G0018187.1 mouse_genomes_project 11 86406459 86470463 - Usp32 protein_coding processed_transcript MGP_CASTEiJ_T0030883.1 MGP_CASTEiJ_G0018187.1 mouse_genomes_project 11 86427163 86470270 - Usp32 protein_coding processed_transcript MGP_CASTEiJ_T0030884.1 MGP_CASTEiJ_G0018187.1 mouse_genomes_project 11 86430612 86470231 - Usp32 protein_coding retained_intron MGP_CASTEiJ_T0003111.1 MGP_CASTEiJ_G0002894.1 mouse_genomes_project 11 69518979 69524187 + Dnah2os antisense antisense MGP_CASTEiJ_T0012258.1 MGP_CASTEiJ_G0010421.1 mouse_genomes_project 11 54108779 54109233 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032722.1 MGP_CASTEiJ_G0018625.1 mouse_genomes_project 11 110785410 110936323 + MGP_CASTEiJ_P0032722 Helz protein_coding unknown_likely_coding MGP_CASTEiJ_T0032723.1 MGP_CASTEiJ_G0018625.1 mouse_genomes_project 11 110785450 110823413 + Helz protein_coding processed_transcript MGP_CASTEiJ_T0032724.1 MGP_CASTEiJ_G0018625.1 mouse_genomes_project 11 110785476 110916093 + MGP_CASTEiJ_P0032724 Helz protein_coding protein_coding MGP_CASTEiJ_T0032725.1 MGP_CASTEiJ_G0018625.1 mouse_genomes_project 11 110785480 110931723 + MGP_CASTEiJ_P0032725 Helz protein_coding protein_coding MGP_CASTEiJ_T0032726.1 MGP_CASTEiJ_G0018625.1 mouse_genomes_project 11 110785488 110938592 + MGP_CASTEiJ_P0032726 Helz protein_coding protein_coding MGP_CASTEiJ_T0032727.1 MGP_CASTEiJ_G0018625.1 mouse_genomes_project 11 110869067 110916093 + MGP_CASTEiJ_P0032727 Helz protein_coding protein_coding MGP_CASTEiJ_T0032728.1 MGP_CASTEiJ_G0018625.1 mouse_genomes_project 11 110876382 110889790 + Helz protein_coding processed_transcript MGP_CASTEiJ_T0032729.1 MGP_CASTEiJ_G0018625.1 mouse_genomes_project 11 110914863 110916816 + Helz protein_coding processed_transcript MGP_CASTEiJ_T0032730.1 MGP_CASTEiJ_G0018625.1 mouse_genomes_project 11 110916781 110931293 + Helz protein_coding processed_transcript MGP_CASTEiJ_T0027342.1 MGP_CASTEiJ_G0017338.1 mouse_genomes_project 11 3415027 3419292 + MGP_CASTEiJ_P0027342 Ppia protein_coding protein_coding MGP_CASTEiJ_T0027343.1 MGP_CASTEiJ_G0017338.1 mouse_genomes_project 11 3415452 3418022 + Ppia protein_coding retained_intron MGP_CASTEiJ_T0027344.1 MGP_CASTEiJ_G0017338.1 mouse_genomes_project 11 3415460 3419196 + Ppia protein_coding retained_intron MGP_CASTEiJ_T0027345.1 MGP_CASTEiJ_G0017338.1 mouse_genomes_project 11 3415460 3419287 + Ppia protein_coding retained_intron MGP_CASTEiJ_T0031399.1 MGP_CASTEiJ_G0018307.1 mouse_genomes_project 11 98270100 98320229 + MGP_CASTEiJ_P0031399 Ttll6 protein_coding protein_coding MGP_CASTEiJ_T0031400.1 MGP_CASTEiJ_G0018307.1 mouse_genomes_project 11 98282337 98320224 + MGP_CASTEiJ_P0031400 Ttll6 protein_coding protein_coding MGP_CASTEiJ_T0101848.1 MGP_CASTEiJ_G0038596.1 mouse_genomes_project 11 105615510 105643468 + unitary_pseudogene unitary_pseudogene MGP_CASTEiJ_T0012375.1 MGP_CASTEiJ_G0010538.1 mouse_genomes_project 11 102254053 102255591 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009515.1 MGP_CASTEiJ_G0007703.1 mouse_genomes_project 11 119119519 119119627 + Gm25837 miRNA miRNA MGP_CASTEiJ_T0033449.1 MGP_CASTEiJ_G0018767.1 mouse_genomes_project 11 122471761 122526771 - MGP_CASTEiJ_P0033449 Timp2 protein_coding protein_coding MGP_CASTEiJ_T0028118.1 MGP_CASTEiJ_G0017522.1 mouse_genomes_project 11 47526487 47540337 - MGP_CASTEiJ_P0028118 Trim41 protein_coding protein_coding MGP_CASTEiJ_T0028119.1 MGP_CASTEiJ_G0017522.1 mouse_genomes_project 11 47526758 47540157 - MGP_CASTEiJ_P0028119 Trim41 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028120.1 MGP_CASTEiJ_G0017522.1 mouse_genomes_project 11 47528469 47534267 - MGP_CASTEiJ_P0028120 Trim41 protein_coding protein_coding MGP_CASTEiJ_T0028121.1 MGP_CASTEiJ_G0017522.1 mouse_genomes_project 11 47529179 47539937 - MGP_CASTEiJ_P0028121 Trim41 protein_coding protein_coding MGP_CASTEiJ_T0028122.1 MGP_CASTEiJ_G0017522.1 mouse_genomes_project 11 47529281 47538101 - MGP_CASTEiJ_P0028122 Trim41 protein_coding protein_coding MGP_CASTEiJ_T0030121.1 MGP_CASTEiJ_G0018011.1 mouse_genomes_project 11 75693438 75698390 - MGP_CASTEiJ_P0030121 Hic1 protein_coding protein_coding MGP_CASTEiJ_T0030122.1 MGP_CASTEiJ_G0018011.1 mouse_genomes_project 11 75693438 75697970 - MGP_CASTEiJ_P0030122 Hic1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030123.1 MGP_CASTEiJ_G0018011.1 mouse_genomes_project 11 75696026 75697020 - Hic1 protein_coding processed_transcript MGP_CASTEiJ_T0012121.1 MGP_CASTEiJ_G0010284.1 mouse_genomes_project 11 3154100 3154456 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027720.1 MGP_CASTEiJ_G0017420.1 mouse_genomes_project 11 26975170 27032605 + MGP_CASTEiJ_P0027720 Smek2 protein_coding protein_coding MGP_CASTEiJ_T0027721.1 MGP_CASTEiJ_G0017420.1 mouse_genomes_project 11 26975170 27021799 + MGP_CASTEiJ_P0027721 Smek2 protein_coding protein_coding MGP_CASTEiJ_T0027722.1 MGP_CASTEiJ_G0017420.1 mouse_genomes_project 11 26976024 26993379 + MGP_CASTEiJ_P0027722 Smek2 protein_coding protein_coding MGP_CASTEiJ_T0027723.1 MGP_CASTEiJ_G0017420.1 mouse_genomes_project 11 27004116 27009206 + Smek2 protein_coding processed_transcript MGP_CASTEiJ_T0027724.1 MGP_CASTEiJ_G0017420.1 mouse_genomes_project 11 27004127 27017466 + MGP_CASTEiJ_P0027724 Smek2 protein_coding protein_coding MGP_CASTEiJ_T0027725.1 MGP_CASTEiJ_G0017420.1 mouse_genomes_project 11 27013622 27030359 + Smek2 protein_coding processed_transcript MGP_CASTEiJ_T0027726.1 MGP_CASTEiJ_G0017420.1 mouse_genomes_project 11 27025544 27032605 + MGP_CASTEiJ_P0027726 Smek2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012207.1 MGP_CASTEiJ_G0010370.1 mouse_genomes_project 11 28950574 28951178 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032736.1 MGP_CASTEiJ_G0018629.1 mouse_genomes_project 11 111195887 111625093 - MGP_CASTEiJ_P0032736 Prkca protein_coding protein_coding MGP_CASTEiJ_T0032737.1 MGP_CASTEiJ_G0018629.1 mouse_genomes_project 11 111200686 111242270 - MGP_CASTEiJ_P0032737 Prkca protein_coding protein_coding MGP_CASTEiJ_T0032738.1 MGP_CASTEiJ_G0018629.1 mouse_genomes_project 11 111240980 111278382 - Prkca protein_coding processed_transcript MGP_CASTEiJ_T0032739.1 MGP_CASTEiJ_G0018629.1 mouse_genomes_project 11 111465157 111624813 - Prkca protein_coding processed_transcript MGP_CASTEiJ_T0006116.1 MGP_CASTEiJ_G0005120.1 mouse_genomes_project 11 76313532 76332501 - Gm26836 lincRNA lincRNA MGP_CASTEiJ_T0031781.1 MGP_CASTEiJ_G0018397.1 mouse_genomes_project 11 101853588 101861700 - MGP_CASTEiJ_P0031781 Krt25 protein_coding protein_coding MGP_CASTEiJ_T0028722.1 MGP_CASTEiJ_G0017691.1 mouse_genomes_project 11 58329327 58347330 - MGP_CASTEiJ_P0028722 Zfp39 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028723.1 MGP_CASTEiJ_G0017691.1 mouse_genomes_project 11 58329331 58347353 - MGP_CASTEiJ_P0028723 Zfp39 protein_coding protein_coding MGP_CASTEiJ_T0030153.1 MGP_CASTEiJ_G0018019.1 mouse_genomes_project 11 75981862 75992942 - MGP_CASTEiJ_P0030153 Wdr81 protein_coding protein_coding MGP_CASTEiJ_T0030154.1 MGP_CASTEiJ_G0018019.1 mouse_genomes_project 11 75982600 75996327 - MGP_CASTEiJ_P0030154 Wdr81 protein_coding protein_coding MGP_CASTEiJ_T0030155.1 MGP_CASTEiJ_G0018019.1 mouse_genomes_project 11 75989069 75990687 - Wdr81 protein_coding processed_transcript MGP_CASTEiJ_T0099266.1 MGP_CASTEiJ_G0036179.1 mouse_genomes_project 11 90720368 90720472 - Gm22534 snRNA snRNA MGP_CASTEiJ_T0012332.1 MGP_CASTEiJ_G0010495.1 mouse_genomes_project 11 81768264 81768678 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032852.1 MGP_CASTEiJ_G0018653.1 mouse_genomes_project 11 116892053 117259271 - MGP_CASTEiJ_P0032852 Slc39a11 protein_coding protein_coding MGP_CASTEiJ_T0032853.1 MGP_CASTEiJ_G0018653.1 mouse_genomes_project 11 116892053 117259283 - MGP_CASTEiJ_P0032853 Slc39a11 protein_coding protein_coding MGP_CASTEiJ_T0032854.1 MGP_CASTEiJ_G0018653.1 mouse_genomes_project 11 116892053 117259274 - MGP_CASTEiJ_P0032854 Slc39a11 protein_coding protein_coding MGP_CASTEiJ_T0032855.1 MGP_CASTEiJ_G0018653.1 mouse_genomes_project 11 117049502 117348115 - MGP_CASTEiJ_P0032855 Slc39a11 protein_coding protein_coding MGP_CASTEiJ_T0032856.1 MGP_CASTEiJ_G0018653.1 mouse_genomes_project 11 117149696 117259294 - MGP_CASTEiJ_P0032856 Slc39a11 protein_coding protein_coding MGP_CASTEiJ_T0032857.1 MGP_CASTEiJ_G0018653.1 mouse_genomes_project 11 117214535 117348123 - MGP_CASTEiJ_P0032857 Slc39a11 protein_coding protein_coding MGP_CASTEiJ_T0032858.1 MGP_CASTEiJ_G0018653.1 mouse_genomes_project 11 117250234 117348114 - MGP_CASTEiJ_P0032858 Slc39a11 protein_coding protein_coding MGP_CASTEiJ_T0032859.1 MGP_CASTEiJ_G0018653.1 mouse_genomes_project 11 117273052 117348114 - Slc39a11 protein_coding processed_transcript MGP_CASTEiJ_T0000805.1 MGP_CASTEiJ_G0000745.1 mouse_genomes_project 11 16313636 16314503 - TEC TEC MGP_CASTEiJ_T0032719.1 MGP_CASTEiJ_G0018624.1 mouse_genomes_project 11 110699248 110718876 + MGP_CASTEiJ_P0032719 Psmd12 protein_coding protein_coding MGP_CASTEiJ_T0032720.1 MGP_CASTEiJ_G0018624.1 mouse_genomes_project 11 110699292 110725852 + MGP_CASTEiJ_P0032720 Psmd12 protein_coding protein_coding MGP_CASTEiJ_T0032721.1 MGP_CASTEiJ_G0018624.1 mouse_genomes_project 11 110699341 110718443 + MGP_CASTEiJ_P0032721 Psmd12 protein_coding protein_coding MGP_CASTEiJ_T0003051.1 MGP_CASTEiJ_G0002843.1 mouse_genomes_project 11 50931849 50932907 + Gm12204 antisense antisense MGP_CASTEiJ_T0027055.1 MGP_CASTEiJ_G0017277.1 mouse_genomes_project 11 343672 367587 - Smtn protein_coding processed_transcript MGP_CASTEiJ_T0027056.1 MGP_CASTEiJ_G0017277.1 mouse_genomes_project 11 343672 367574 - MGP_CASTEiJ_P0027056 Smtn protein_coding protein_coding MGP_CASTEiJ_T0027057.1 MGP_CASTEiJ_G0017277.1 mouse_genomes_project 11 343672 356196 - MGP_CASTEiJ_P0027057 Smtn protein_coding protein_coding MGP_CASTEiJ_T0027058.1 MGP_CASTEiJ_G0017277.1 mouse_genomes_project 11 343672 367627 - MGP_CASTEiJ_P0027058 Smtn protein_coding protein_coding MGP_CASTEiJ_T0027059.1 MGP_CASTEiJ_G0017277.1 mouse_genomes_project 11 343672 367627 - MGP_CASTEiJ_P0027059 Smtn protein_coding protein_coding MGP_CASTEiJ_T0027060.1 MGP_CASTEiJ_G0017277.1 mouse_genomes_project 11 343672 365743 - MGP_CASTEiJ_P0027060 Smtn protein_coding protein_coding MGP_CASTEiJ_T0027061.1 MGP_CASTEiJ_G0017277.1 mouse_genomes_project 11 346681 348696 - Smtn protein_coding processed_transcript MGP_CASTEiJ_T0027062.1 MGP_CASTEiJ_G0017277.1 mouse_genomes_project 11 360710 368951 - MGP_CASTEiJ_P0027062 Smtn protein_coding protein_coding MGP_CASTEiJ_T0027063.1 MGP_CASTEiJ_G0017277.1 mouse_genomes_project 11 360853 367586 - MGP_CASTEiJ_P0027063 Smtn protein_coding protein_coding MGP_CASTEiJ_T0027064.1 MGP_CASTEiJ_G0017277.1 mouse_genomes_project 11 363159 367584 - Smtn protein_coding processed_transcript MGP_CASTEiJ_T0031134.1 MGP_CASTEiJ_G0018248.1 mouse_genomes_project 11 92035480 92093449 - MGP_CASTEiJ_P0031134 Hlf protein_coding protein_coding MGP_CASTEiJ_T0031135.1 MGP_CASTEiJ_G0018248.1 mouse_genomes_project 11 92037933 92092244 - Hlf protein_coding processed_transcript MGP_CASTEiJ_T0031136.1 MGP_CASTEiJ_G0018248.1 mouse_genomes_project 11 92038085 92090968 - Hlf protein_coding processed_transcript MGP_CASTEiJ_T0031137.1 MGP_CASTEiJ_G0018248.1 mouse_genomes_project 11 92039757 92084665 - Hlf protein_coding processed_transcript MGP_CASTEiJ_T0031138.1 MGP_CASTEiJ_G0018248.1 mouse_genomes_project 11 92044512 92090731 - MGP_CASTEiJ_P0031138 Hlf protein_coding protein_coding MGP_CASTEiJ_T0031139.1 MGP_CASTEiJ_G0018248.1 mouse_genomes_project 11 92090680 92092144 - Hlf protein_coding processed_transcript MGP_CASTEiJ_T0027526.1 MGP_CASTEiJ_G0017381.1 mouse_genomes_project 11 17611912 17634106 - MGP_CASTEiJ_P0027526 Cep68 protein_coding protein_coding MGP_CASTEiJ_T0027527.1 MGP_CASTEiJ_G0017381.1 mouse_genomes_project 11 17614100 17634017 - MGP_CASTEiJ_P0027527 Cep68 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027528.1 MGP_CASTEiJ_G0017381.1 mouse_genomes_project 11 17623050 17634106 - MGP_CASTEiJ_P0027528 Cep68 protein_coding protein_coding MGP_CASTEiJ_T0027529.1 MGP_CASTEiJ_G0017381.1 mouse_genomes_project 11 17623051 17634117 - MGP_CASTEiJ_P0027529 Cep68 protein_coding protein_coding MGP_CASTEiJ_T0027530.1 MGP_CASTEiJ_G0017381.1 mouse_genomes_project 11 17626207 17634071 - Cep68 protein_coding retained_intron MGP_CASTEiJ_T0030777.1 MGP_CASTEiJ_G0018162.1 mouse_genomes_project 11 84750250 84755964 - MGP_CASTEiJ_P0030777 Ccl9 protein_coding protein_coding MGP_CASTEiJ_T0030778.1 MGP_CASTEiJ_G0018162.1 mouse_genomes_project 11 84752648 84754471 - Ccl9 protein_coding processed_transcript MGP_CASTEiJ_T0031028.1 MGP_CASTEiJ_G0018220.1 mouse_genomes_project 11 89252493 89279605 + MGP_CASTEiJ_P0031028 Bzrap1 protein_coding protein_coding MGP_CASTEiJ_T0031029.1 MGP_CASTEiJ_G0018220.1 mouse_genomes_project 11 89252539 89279605 + MGP_CASTEiJ_P0031029 Bzrap1 protein_coding protein_coding MGP_CASTEiJ_T0031030.1 MGP_CASTEiJ_G0018220.1 mouse_genomes_project 11 89256687 89258352 + Bzrap1 protein_coding processed_transcript MGP_CASTEiJ_T0031031.1 MGP_CASTEiJ_G0018220.1 mouse_genomes_project 11 89269809 89273224 + MGP_CASTEiJ_P0031031 Bzrap1 protein_coding protein_coding MGP_CASTEiJ_T0031032.1 MGP_CASTEiJ_G0018220.1 mouse_genomes_project 11 89270216 89279605 + MGP_CASTEiJ_P0031032 Bzrap1 protein_coding protein_coding MGP_CASTEiJ_T0031033.1 MGP_CASTEiJ_G0018220.1 mouse_genomes_project 11 89270774 89279605 + Bzrap1 protein_coding retained_intron MGP_CASTEiJ_T0031034.1 MGP_CASTEiJ_G0018220.1 mouse_genomes_project 11 89272478 89279605 + Bzrap1 protein_coding retained_intron MGP_CASTEiJ_T0031035.1 MGP_CASTEiJ_G0018220.1 mouse_genomes_project 11 89272637 89273975 + Bzrap1 protein_coding retained_intron MGP_CASTEiJ_T0031036.1 MGP_CASTEiJ_G0018220.1 mouse_genomes_project 11 89273981 89278418 + MGP_CASTEiJ_P0031036 Bzrap1 protein_coding protein_coding MGP_CASTEiJ_T0031037.1 MGP_CASTEiJ_G0018220.1 mouse_genomes_project 11 89275262 89276902 + Bzrap1 protein_coding retained_intron MGP_CASTEiJ_T0030023.1 MGP_CASTEiJ_G0017976.1 mouse_genomes_project 11 73956544 73958988 - MGP_CASTEiJ_P0030023 Olfr382 protein_coding protein_coding MGP_CASTEiJ_T0003109.1 MGP_CASTEiJ_G0002892.1 mouse_genomes_project 11 69393081 69395389 - Kcnab3os antisense antisense MGP_CASTEiJ_T0012380.1 MGP_CASTEiJ_G0010543.1 mouse_genomes_project 11 102881187 102881523 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012168.1 MGP_CASTEiJ_G0010331.1 mouse_genomes_project 11 18650117 18650669 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003176.1 MGP_CASTEiJ_G0002945.1 mouse_genomes_project 11 101296291 101308566 - Gm12359 antisense antisense MGP_CASTEiJ_T0003177.1 MGP_CASTEiJ_G0002945.1 mouse_genomes_project 11 101296891 101308566 - Gm12359 antisense antisense MGP_CASTEiJ_T0003178.1 MGP_CASTEiJ_G0002945.1 mouse_genomes_project 11 101303184 101308537 - Gm12359 antisense antisense MGP_CASTEiJ_T0031565.1 MGP_CASTEiJ_G0018347.1 mouse_genomes_project 11 100005062 100036616 - MGP_CASTEiJ_P0031565 Pip4k2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0031566.1 MGP_CASTEiJ_G0018347.1 mouse_genomes_project 11 100005062 100036565 - MGP_CASTEiJ_P0031566 Pip4k2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0031567.1 MGP_CASTEiJ_G0018347.1 mouse_genomes_project 11 100010296 100016399 - Pip4k2b protein_coding processed_transcript MGP_CASTEiJ_T0098469.1 MGP_CASTEiJ_G0035400.1 mouse_genomes_project 11 111105069 111105181 + Gm27595 rRNA rRNA MGP_CASTEiJ_T0006163.1 MGP_CASTEiJ_G0005153.1 mouse_genomes_project 11 98411454 98424859 + Gm53 lincRNA lincRNA MGP_CASTEiJ_T0006164.1 MGP_CASTEiJ_G0005153.1 mouse_genomes_project 11 98411972 98425073 + Gm53 lincRNA lincRNA MGP_CASTEiJ_T0006165.1 MGP_CASTEiJ_G0005153.1 mouse_genomes_project 11 98412865 98422056 + Gm53 lincRNA lincRNA MGP_CASTEiJ_T0006166.1 MGP_CASTEiJ_G0005153.1 mouse_genomes_project 11 98421972 98425244 + Gm53 lincRNA lincRNA MGP_CASTEiJ_T0033630.1 MGP_CASTEiJ_G0018797.1 mouse_genomes_project 11 124647675 124652377 - MGP_CASTEiJ_P0033630 protein_coding protein_coding MGP_CASTEiJ_T0006200.1 MGP_CASTEiJ_G0005179.1 mouse_genomes_project 11 119520452 119531920 + Gm26613 lincRNA lincRNA MGP_CASTEiJ_T0012209.1 MGP_CASTEiJ_G0010372.1 mouse_genomes_project 11 30782343 30783301 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100420.1 MGP_CASTEiJ_G0037333.1 mouse_genomes_project 11 12735618 12735748 + Gm25490 snoRNA snoRNA MGP_CASTEiJ_T0031645.1 MGP_CASTEiJ_G0018364.1 mouse_genomes_project 11 100707452 100729742 + MGP_CASTEiJ_P0031645 Stard3 protein_coding protein_coding MGP_CASTEiJ_T0031646.1 MGP_CASTEiJ_G0018364.1 mouse_genomes_project 11 100707512 100725474 + Stard3 protein_coding processed_transcript MGP_CASTEiJ_T0031647.1 MGP_CASTEiJ_G0018364.1 mouse_genomes_project 11 100707513 100729755 + Stard3 protein_coding processed_transcript MGP_CASTEiJ_T0031648.1 MGP_CASTEiJ_G0018364.1 mouse_genomes_project 11 100707526 100725479 + Stard3 protein_coding processed_transcript MGP_CASTEiJ_T0031649.1 MGP_CASTEiJ_G0018364.1 mouse_genomes_project 11 100724159 100727292 + Stard3 protein_coding processed_transcript MGP_CASTEiJ_T0031650.1 MGP_CASTEiJ_G0018364.1 mouse_genomes_project 11 100725090 100726873 + Stard3 protein_coding processed_transcript MGP_CASTEiJ_T0031651.1 MGP_CASTEiJ_G0018364.1 mouse_genomes_project 11 100726799 100727992 + Stard3 protein_coding processed_transcript MGP_CASTEiJ_T0032793.1 MGP_CASTEiJ_G0018639.1 mouse_genomes_project 11 112822861 112840281 + Arsg protein_coding processed_transcript MGP_CASTEiJ_T0032794.1 MGP_CASTEiJ_G0018639.1 mouse_genomes_project 11 112822861 112931705 + MGP_CASTEiJ_P0032794 Arsg protein_coding protein_coding MGP_CASTEiJ_T0032795.1 MGP_CASTEiJ_G0018639.1 mouse_genomes_project 11 112822870 112931972 + MGP_CASTEiJ_P0032795 Arsg protein_coding unknown_likely_coding MGP_CASTEiJ_T0032796.1 MGP_CASTEiJ_G0018639.1 mouse_genomes_project 11 112835334 112840179 + Arsg protein_coding processed_transcript MGP_CASTEiJ_T0032797.1 MGP_CASTEiJ_G0018639.1 mouse_genomes_project 11 112835917 112931710 + MGP_CASTEiJ_P0032797 Arsg protein_coding protein_coding MGP_CASTEiJ_T0032798.1 MGP_CASTEiJ_G0018639.1 mouse_genomes_project 11 112896112 112931710 + MGP_CASTEiJ_P0032798 Arsg protein_coding protein_coding MGP_CASTEiJ_T0003099.1 MGP_CASTEiJ_G0002884.1 mouse_genomes_project 11 66829232 66871965 - Gm12298 antisense antisense MGP_CASTEiJ_T0031282.1 MGP_CASTEiJ_G0018276.1 mouse_genomes_project 11 96594574 96608243 - MGP_CASTEiJ_P0031282 Xylt2 protein_coding protein_coding MGP_CASTEiJ_T0031283.1 MGP_CASTEiJ_G0018276.1 mouse_genomes_project 11 96595338 96608243 - MGP_CASTEiJ_P0031283 Xylt2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031284.1 MGP_CASTEiJ_G0018276.1 mouse_genomes_project 11 96596997 96598960 - MGP_CASTEiJ_P0031284 Xylt2 protein_coding protein_coding MGP_CASTEiJ_T0031285.1 MGP_CASTEiJ_G0018276.1 mouse_genomes_project 11 96597641 96598574 - Xylt2 protein_coding retained_intron MGP_CASTEiJ_T0031286.1 MGP_CASTEiJ_G0018276.1 mouse_genomes_project 11 96599294 96608135 - MGP_CASTEiJ_P0031286 Xylt2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031287.1 MGP_CASTEiJ_G0018276.1 mouse_genomes_project 11 96606688 96608141 - Xylt2 protein_coding processed_transcript MGP_CASTEiJ_T0012191.1 MGP_CASTEiJ_G0010354.1 mouse_genomes_project 11 25208517 25208993 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030675.1 MGP_CASTEiJ_G0018134.1 mouse_genomes_project 11 83164501 83166121 + MGP_CASTEiJ_P0030675 Ccl8 protein_coding protein_coding MGP_CASTEiJ_T0012294.1 MGP_CASTEiJ_G0010457.1 mouse_genomes_project 11 69722243 69722632 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100476.1 MGP_CASTEiJ_G0037389.1 mouse_genomes_project 11 107251632 107251765 - Gm22743 snoRNA snoRNA MGP_CASTEiJ_T0033529.1 MGP_CASTEiJ_G0018782.1 mouse_genomes_project 11 123542406 123589251 + MGP_CASTEiJ_P0033529 Card14 protein_coding protein_coding MGP_CASTEiJ_T0033530.1 MGP_CASTEiJ_G0018782.1 mouse_genomes_project 11 123551577 123589251 + MGP_CASTEiJ_P0033530 Card14 protein_coding protein_coding MGP_CASTEiJ_T0033531.1 MGP_CASTEiJ_G0018782.1 mouse_genomes_project 11 123557803 123588756 + MGP_CASTEiJ_P0033531 Card14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033532.1 MGP_CASTEiJ_G0018782.1 mouse_genomes_project 11 123563312 123589063 + Card14 protein_coding processed_transcript MGP_CASTEiJ_T0033533.1 MGP_CASTEiJ_G0018782.1 mouse_genomes_project 11 123565619 123589250 + Card14 protein_coding processed_transcript MGP_CASTEiJ_T0003032.1 MGP_CASTEiJ_G0002825.1 mouse_genomes_project 11 31789714 31791727 + Gm12119 antisense antisense MGP_CASTEiJ_T0032617.1 MGP_CASTEiJ_G0018605.1 mouse_genomes_project 11 109362617 109367230 - MGP_CASTEiJ_P0032617 Smarcd2 protein_coding protein_coding MGP_CASTEiJ_T0032618.1 MGP_CASTEiJ_G0018605.1 mouse_genomes_project 11 109362617 109372698 - MGP_CASTEiJ_P0032618 Smarcd2 protein_coding protein_coding MGP_CASTEiJ_T0032619.1 MGP_CASTEiJ_G0018605.1 mouse_genomes_project 11 109363144 109365093 - Smarcd2 protein_coding retained_intron MGP_CASTEiJ_T0032620.1 MGP_CASTEiJ_G0018605.1 mouse_genomes_project 11 109363229 109364367 - Smarcd2 protein_coding retained_intron MGP_CASTEiJ_T0032621.1 MGP_CASTEiJ_G0018605.1 mouse_genomes_project 11 109363449 109365177 - MGP_CASTEiJ_P0032621 Smarcd2 protein_coding protein_coding MGP_CASTEiJ_T0032622.1 MGP_CASTEiJ_G0018605.1 mouse_genomes_project 11 109364163 109365502 - Smarcd2 protein_coding retained_intron MGP_CASTEiJ_T0032623.1 MGP_CASTEiJ_G0018605.1 mouse_genomes_project 11 109364742 109372691 - Smarcd2 protein_coding processed_transcript MGP_CASTEiJ_T0032624.1 MGP_CASTEiJ_G0018605.1 mouse_genomes_project 11 109365169 109366914 - Smarcd2 protein_coding processed_transcript MGP_CASTEiJ_T0032625.1 MGP_CASTEiJ_G0018605.1 mouse_genomes_project 11 109366321 109366959 - Smarcd2 protein_coding retained_intron MGP_CASTEiJ_T0033075.1 MGP_CASTEiJ_G0018701.1 mouse_genomes_project 11 119520342 119532919 - MGP_CASTEiJ_P0033075 Slc25a19 protein_coding protein_coding MGP_CASTEiJ_T0033076.1 MGP_CASTEiJ_G0018701.1 mouse_genomes_project 11 119520430 119528034 - MGP_CASTEiJ_P0033076 Slc25a19 protein_coding protein_coding MGP_CASTEiJ_T0033077.1 MGP_CASTEiJ_G0018701.1 mouse_genomes_project 11 119521539 119523141 - Slc25a19 protein_coding processed_transcript MGP_CASTEiJ_T0033078.1 MGP_CASTEiJ_G0018701.1 mouse_genomes_project 11 119522897 119533320 - Slc25a19 protein_coding processed_transcript MGP_CASTEiJ_T0033079.1 MGP_CASTEiJ_G0018701.1 mouse_genomes_project 11 119528215 119533319 - Slc25a19 protein_coding processed_transcript MGP_CASTEiJ_T0033080.1 MGP_CASTEiJ_G0018701.1 mouse_genomes_project 11 119528620 119533325 - Slc25a19 protein_coding processed_transcript MGP_CASTEiJ_T0033081.1 MGP_CASTEiJ_G0018701.1 mouse_genomes_project 11 119529085 119533494 - Slc25a19 protein_coding processed_transcript MGP_CASTEiJ_T0033082.1 MGP_CASTEiJ_G0018701.1 mouse_genomes_project 11 119529407 119533325 - MGP_CASTEiJ_P0033082 Slc25a19 protein_coding protein_coding MGP_CASTEiJ_T0033083.1 MGP_CASTEiJ_G0018701.1 mouse_genomes_project 11 119529428 119533161 - MGP_CASTEiJ_P0033083 Slc25a19 protein_coding protein_coding MGP_CASTEiJ_T0033084.1 MGP_CASTEiJ_G0018701.1 mouse_genomes_project 11 119529483 119533343 - MGP_CASTEiJ_P0033084 Slc25a19 protein_coding protein_coding MGP_CASTEiJ_T0033861.1 MGP_CASTEiJ_G0018841.1 mouse_genomes_project 11 125529897 125532071 + MGP_CASTEiJ_P0033861 Tex19.1 protein_coding protein_coding MGP_CASTEiJ_T0033862.1 MGP_CASTEiJ_G0018841.1 mouse_genomes_project 11 125529911 125530622 + MGP_CASTEiJ_P0033862 Tex19.1 protein_coding protein_coding MGP_CASTEiJ_T0030704.1 MGP_CASTEiJ_G0018140.1 mouse_genomes_project 11 83894429 83967154 - MGP_CASTEiJ_P0030704 Rffl protein_coding protein_coding MGP_CASTEiJ_T0030705.1 MGP_CASTEiJ_G0018140.1 mouse_genomes_project 11 83896609 83940134 - MGP_CASTEiJ_P0030705 Rffl protein_coding protein_coding MGP_CASTEiJ_T0030706.1 MGP_CASTEiJ_G0018140.1 mouse_genomes_project 11 83898027 83923346 - MGP_CASTEiJ_P0030706 Rffl protein_coding protein_coding MGP_CASTEiJ_T0030707.1 MGP_CASTEiJ_G0018140.1 mouse_genomes_project 11 83903328 83940378 - MGP_CASTEiJ_P0030707 Rffl protein_coding protein_coding MGP_CASTEiJ_T0028499.1 MGP_CASTEiJ_G0017621.1 mouse_genomes_project 11 52871337 52872205 - MGP_CASTEiJ_P0028499 Gm17334 protein_coding protein_coding MGP_CASTEiJ_T0027891.1 MGP_CASTEiJ_G0017458.1 mouse_genomes_project 11 30831056 30837463 - MGP_CASTEiJ_P0027891 Smim23 protein_coding protein_coding MGP_CASTEiJ_T0027892.1 MGP_CASTEiJ_G0017458.1 mouse_genomes_project 11 30832899 30837506 - MGP_CASTEiJ_P0027892 Smim23 protein_coding protein_coding MGP_CASTEiJ_T0031321.1 MGP_CASTEiJ_G0018286.1 mouse_genomes_project 11 97192571 97197745 + MGP_CASTEiJ_P0031321 Dlx3 protein_coding protein_coding MGP_CASTEiJ_T0031322.1 MGP_CASTEiJ_G0018286.1 mouse_genomes_project 11 97192685 97200819 + MGP_CASTEiJ_P0031322 Dlx3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028031.1 MGP_CASTEiJ_G0017497.1 mouse_genomes_project 11 42212925 42288689 - MGP_CASTEiJ_P0028031 Adra1b protein_coding protein_coding MGP_CASTEiJ_T0028032.1 MGP_CASTEiJ_G0017497.1 mouse_genomes_project 11 42212925 42356458 - MGP_CASTEiJ_P0028032 Adra1b protein_coding protein_coding MGP_CASTEiJ_T0028033.1 MGP_CASTEiJ_G0017497.1 mouse_genomes_project 11 42214342 42356458 - MGP_CASTEiJ_P0028033 Adra1b protein_coding protein_coding MGP_CASTEiJ_T0012277.1 MGP_CASTEiJ_G0010440.1 mouse_genomes_project 11 60400333 60400774 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029566.1 MGP_CASTEiJ_G0017877.1 mouse_genomes_project 11 70038034 70039157 - MGP_CASTEiJ_P0029566 Eif5a protein_coding protein_coding MGP_CASTEiJ_T0029567.1 MGP_CASTEiJ_G0017877.1 mouse_genomes_project 11 70038063 70042060 - MGP_CASTEiJ_P0029567 Eif5a protein_coding unknown_likely_coding MGP_CASTEiJ_T0029568.1 MGP_CASTEiJ_G0017877.1 mouse_genomes_project 11 70038309 70041782 - MGP_CASTEiJ_P0029568 Eif5a protein_coding protein_coding MGP_CASTEiJ_T0012319.1 MGP_CASTEiJ_G0010482.1 mouse_genomes_project 11 77748754 77749083 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027967.1 MGP_CASTEiJ_G0017480.1 mouse_genomes_project 11 39036821 39075896 - MGP_CASTEiJ_P0027967 Hmmr protein_coding unknown_likely_coding MGP_CASTEiJ_T0027968.1 MGP_CASTEiJ_G0017480.1 mouse_genomes_project 11 39054591 39075676 - Hmmr protein_coding processed_transcript MGP_CASTEiJ_T0027969.1 MGP_CASTEiJ_G0017480.1 mouse_genomes_project 11 39056522 39075676 - Hmmr protein_coding processed_transcript MGP_CASTEiJ_T0027970.1 MGP_CASTEiJ_G0017480.1 mouse_genomes_project 11 39058207 39075651 - Hmmr protein_coding processed_transcript MGP_CASTEiJ_T0101983.1 MGP_CASTEiJ_G0038708.1 mouse_genomes_project 11 57386814 57395915 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0032698.1 MGP_CASTEiJ_G0018621.1 mouse_genomes_project 11 110207138 110308871 - MGP_CASTEiJ_P0032698 Bptf protein_coding protein_coding MGP_CASTEiJ_T0032699.1 MGP_CASTEiJ_G0018621.1 mouse_genomes_project 11 110207140 110308924 - MGP_CASTEiJ_P0032699 Bptf protein_coding protein_coding MGP_CASTEiJ_T0032700.1 MGP_CASTEiJ_G0018621.1 mouse_genomes_project 11 110207140 110308924 - MGP_CASTEiJ_P0032700 Bptf protein_coding protein_coding MGP_CASTEiJ_T0032701.1 MGP_CASTEiJ_G0018621.1 mouse_genomes_project 11 110209561 110217824 - Bptf protein_coding processed_transcript MGP_CASTEiJ_T0032702.1 MGP_CASTEiJ_G0018621.1 mouse_genomes_project 11 110209772 110308607 - MGP_CASTEiJ_P0032702 Bptf protein_coding unknown_likely_coding MGP_CASTEiJ_T0032703.1 MGP_CASTEiJ_G0018621.1 mouse_genomes_project 11 110209772 110308607 - MGP_CASTEiJ_P0032703 Bptf protein_coding unknown_likely_coding MGP_CASTEiJ_T0032704.1 MGP_CASTEiJ_G0018621.1 mouse_genomes_project 11 110209772 110308607 - MGP_CASTEiJ_P0032704 Bptf protein_coding unknown_likely_coding MGP_CASTEiJ_T0032705.1 MGP_CASTEiJ_G0018621.1 mouse_genomes_project 11 110210502 110308607 - MGP_CASTEiJ_P0032705 Bptf protein_coding unknown_likely_coding MGP_CASTEiJ_T0032706.1 MGP_CASTEiJ_G0018621.1 mouse_genomes_project 11 110210641 110308545 - MGP_CASTEiJ_P0032706 Bptf protein_coding unknown_likely_coding MGP_CASTEiJ_T0032707.1 MGP_CASTEiJ_G0018621.1 mouse_genomes_project 11 110217158 110221379 - Bptf protein_coding processed_transcript MGP_CASTEiJ_T0032708.1 MGP_CASTEiJ_G0018621.1 mouse_genomes_project 11 110220769 110224366 - MGP_CASTEiJ_P0032708 Bptf protein_coding protein_coding MGP_CASTEiJ_T0032709.1 MGP_CASTEiJ_G0018621.1 mouse_genomes_project 11 110232013 110239457 - MGP_CASTEiJ_P0032709 Bptf protein_coding protein_coding MGP_CASTEiJ_T0006017.1 MGP_CASTEiJ_G0005037.1 mouse_genomes_project 11 16970503 16971726 - Gm12027 lincRNA lincRNA MGP_CASTEiJ_T0027971.1 MGP_CASTEiJ_G0017481.1 mouse_genomes_project 11 39075926 39082302 + MGP_CASTEiJ_P0027971 Nudcd2 protein_coding protein_coding MGP_CASTEiJ_T0027972.1 MGP_CASTEiJ_G0017481.1 mouse_genomes_project 11 39076003 39078671 + Nudcd2 protein_coding processed_transcript MGP_CASTEiJ_T0027973.1 MGP_CASTEiJ_G0017481.1 mouse_genomes_project 11 39076205 39081808 + MGP_CASTEiJ_P0027973 Nudcd2 protein_coding protein_coding MGP_CASTEiJ_T0027974.1 MGP_CASTEiJ_G0017481.1 mouse_genomes_project 11 39076464 39081741 + Nudcd2 protein_coding processed_transcript MGP_CASTEiJ_T0027975.1 MGP_CASTEiJ_G0017481.1 mouse_genomes_project 11 39078562 39081521 + Nudcd2 protein_coding processed_transcript MGP_CASTEiJ_T0027520.1 MGP_CASTEiJ_G0017379.1 mouse_genomes_project 11 17434768 17486393 - MGP_CASTEiJ_P0027520 Actr2 protein_coding protein_coding MGP_CASTEiJ_T0027521.1 MGP_CASTEiJ_G0017379.1 mouse_genomes_project 11 17451958 17486347 - Actr2 protein_coding processed_transcript MGP_CASTEiJ_T0027522.1 MGP_CASTEiJ_G0017379.1 mouse_genomes_project 11 17473713 17486389 - Actr2 protein_coding retained_intron MGP_CASTEiJ_T0033855.1 MGP_CASTEiJ_G0018839.1 mouse_genomes_project 11 125446789 125455569 - MGP_CASTEiJ_P0033855 Sectm1a protein_coding protein_coding MGP_CASTEiJ_T0033856.1 MGP_CASTEiJ_G0018839.1 mouse_genomes_project 11 125447299 125455566 - MGP_CASTEiJ_P0033856 Sectm1a protein_coding protein_coding MGP_CASTEiJ_T0033857.1 MGP_CASTEiJ_G0018839.1 mouse_genomes_project 11 125447317 125455560 - MGP_CASTEiJ_P0033857 Sectm1a protein_coding protein_coding MGP_CASTEiJ_T0033858.1 MGP_CASTEiJ_G0018839.1 mouse_genomes_project 11 125447490 125460807 - MGP_CASTEiJ_P0033858 Sectm1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0033859.1 MGP_CASTEiJ_G0018839.1 mouse_genomes_project 11 125448418 125455555 - Sectm1a protein_coding processed_transcript MGP_CASTEiJ_T0029060.1 MGP_CASTEiJ_G0017762.1 mouse_genomes_project 11 61967501 61985946 + MGP_CASTEiJ_P0029060 Ttc19 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029061.1 MGP_CASTEiJ_G0017762.1 mouse_genomes_project 11 61967511 61968637 + Ttc19 protein_coding processed_transcript MGP_CASTEiJ_T0029062.1 MGP_CASTEiJ_G0017762.1 mouse_genomes_project 11 61967520 62004837 + MGP_CASTEiJ_P0029062 Ttc19 protein_coding protein_coding MGP_CASTEiJ_T0029063.1 MGP_CASTEiJ_G0017762.1 mouse_genomes_project 11 61967522 62006016 + MGP_CASTEiJ_P0029063 Ttc19 protein_coding protein_coding MGP_CASTEiJ_T0029064.1 MGP_CASTEiJ_G0017762.1 mouse_genomes_project 11 61969711 62017450 + MGP_CASTEiJ_P0029064 Ttc19 protein_coding protein_coding MGP_CASTEiJ_T0029065.1 MGP_CASTEiJ_G0017762.1 mouse_genomes_project 11 61999523 62017749 + Ttc19 protein_coding processed_transcript MGP_CASTEiJ_T0016448.1 MGP_CASTEiJ_G0014479.1 mouse_genomes_project 11 40010085 40289679 + processed_transcript processed_transcript MGP_CASTEiJ_T0016449.1 MGP_CASTEiJ_G0014479.1 mouse_genomes_project 11 40200841 40296161 + processed_transcript processed_transcript MGP_CASTEiJ_T0016450.1 MGP_CASTEiJ_G0014479.1 mouse_genomes_project 11 40283928 40294156 + processed_transcript processed_transcript MGP_CASTEiJ_T0099224.1 MGP_CASTEiJ_G0036137.1 mouse_genomes_project 11 24025483 24025644 - Gm22868 snRNA snRNA MGP_CASTEiJ_T0003105.1 MGP_CASTEiJ_G0002888.1 mouse_genomes_project 11 68174697 68178635 - C78197 antisense antisense MGP_CASTEiJ_T0027895.1 MGP_CASTEiJ_G0017460.1 mouse_genomes_project 11 31194533 31205493 - MGP_CASTEiJ_P0027895 Npm1 protein_coding protein_coding MGP_CASTEiJ_T0027896.1 MGP_CASTEiJ_G0017460.1 mouse_genomes_project 11 31194759 31205359 - MGP_CASTEiJ_P0027896 Npm1 protein_coding protein_coding MGP_CASTEiJ_T0027897.1 MGP_CASTEiJ_G0017460.1 mouse_genomes_project 11 31194760 31196722 - Npm1 protein_coding processed_transcript MGP_CASTEiJ_T0027898.1 MGP_CASTEiJ_G0017460.1 mouse_genomes_project 11 31197183 31205364 - MGP_CASTEiJ_P0027898 Npm1 protein_coding protein_coding MGP_CASTEiJ_T0027899.1 MGP_CASTEiJ_G0017460.1 mouse_genomes_project 11 31197627 31205363 - MGP_CASTEiJ_P0027899 Npm1 protein_coding protein_coding MGP_CASTEiJ_T0027900.1 MGP_CASTEiJ_G0017460.1 mouse_genomes_project 11 31198323 31199563 - Npm1 protein_coding processed_transcript MGP_CASTEiJ_T0028105.1 MGP_CASTEiJ_G0017518.1 mouse_genomes_project 11 45368981 45418204 + MGP_CASTEiJ_P0028105 Havcr1 protein_coding protein_coding MGP_CASTEiJ_T0009505.1 MGP_CASTEiJ_G0007693.1 mouse_genomes_project 11 105249367 105249435 - Mir6930 miRNA miRNA MGP_CASTEiJ_T0012166.1 MGP_CASTEiJ_G0010329.1 mouse_genomes_project 11 18278783 18278990 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102012.1 MGP_CASTEiJ_G0038737.1 mouse_genomes_project 11 102564171 102564588 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0030966.1 MGP_CASTEiJ_G0018207.1 mouse_genomes_project 11 88526590 88536469 - MGP_CASTEiJ_P0030966 Smg8 protein_coding protein_coding MGP_CASTEiJ_T0030967.1 MGP_CASTEiJ_G0018207.1 mouse_genomes_project 11 88526594 88535077 - MGP_CASTEiJ_P0030967 Smg8 protein_coding protein_coding MGP_CASTEiJ_T0012261.1 MGP_CASTEiJ_G0010424.1 mouse_genomes_project 11 54760849 54761319 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028080.1 MGP_CASTEiJ_G0017510.1 mouse_genomes_project 11 44920026 44987046 - MGP_CASTEiJ_P0028080 Itk protein_coding protein_coding MGP_CASTEiJ_T0028081.1 MGP_CASTEiJ_G0017510.1 mouse_genomes_project 11 44920026 44987068 - MGP_CASTEiJ_P0028081 Itk protein_coding protein_coding MGP_CASTEiJ_T0028082.1 MGP_CASTEiJ_G0017510.1 mouse_genomes_project 11 44938529 44987010 - MGP_CASTEiJ_P0028082 Itk protein_coding protein_coding MGP_CASTEiJ_T0028083.1 MGP_CASTEiJ_G0017510.1 mouse_genomes_project 11 44960126 44987014 - Itk protein_coding retained_intron MGP_CASTEiJ_T0032191.1 MGP_CASTEiJ_G0018523.1 mouse_genomes_project 11 104839332 104853391 + MGP_CASTEiJ_P0032191 Cd300lg protein_coding protein_coding MGP_CASTEiJ_T0032192.1 MGP_CASTEiJ_G0018523.1 mouse_genomes_project 11 104839332 104853391 + MGP_CASTEiJ_P0032192 Cd300lg protein_coding protein_coding MGP_CASTEiJ_T0032193.1 MGP_CASTEiJ_G0018523.1 mouse_genomes_project 11 104839332 104848282 + MGP_CASTEiJ_P0032193 Cd300lg protein_coding protein_coding MGP_CASTEiJ_T0032194.1 MGP_CASTEiJ_G0018523.1 mouse_genomes_project 11 104839332 104853391 + MGP_CASTEiJ_P0032194 Cd300lg protein_coding protein_coding MGP_CASTEiJ_T0027291.1 MGP_CASTEiJ_G0017327.1 mouse_genomes_project 11 2858861 2860806 - MGP_CASTEiJ_P0027291 Myl7 protein_coding protein_coding MGP_CASTEiJ_T0028427.1 MGP_CASTEiJ_G0017602.1 mouse_genomes_project 11 51796764 52236328 + MGP_CASTEiJ_P0028427 Fstl4 protein_coding protein_coding MGP_CASTEiJ_T0012432.1 MGP_CASTEiJ_G0010595.1 mouse_genomes_project 11 126304844 126305970 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029806.1 MGP_CASTEiJ_G0017924.1 mouse_genomes_project 11 70999971 71037380 - MGP_CASTEiJ_P0029806 Scimp protein_coding protein_coding MGP_CASTEiJ_T0029807.1 MGP_CASTEiJ_G0017924.1 mouse_genomes_project 11 71012451 71037445 - MGP_CASTEiJ_P0029807 Scimp protein_coding protein_coding MGP_CASTEiJ_T0102001.1 MGP_CASTEiJ_G0038726.1 mouse_genomes_project 11 96536402 96540468 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0030370.1 MGP_CASTEiJ_G0018063.1 mouse_genomes_project 11 78482279 78484555 - MGP_CASTEiJ_P0030370 protein_coding protein_coding MGP_CASTEiJ_T0012170.1 MGP_CASTEiJ_G0010333.1 mouse_genomes_project 11 18749767 18750068 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003116.1 MGP_CASTEiJ_G0002897.1 mouse_genomes_project 11 75509306 75510028 - Gm28180 antisense antisense MGP_CASTEiJ_T0033679.1 MGP_CASTEiJ_G0018807.1 mouse_genomes_project 11 124792690 124800100 + Hgs protein_coding processed_transcript MGP_CASTEiJ_T0033680.1 MGP_CASTEiJ_G0018807.1 mouse_genomes_project 11 124792690 124810043 + MGP_CASTEiJ_P0033680 Hgs protein_coding protein_coding MGP_CASTEiJ_T0033681.1 MGP_CASTEiJ_G0018807.1 mouse_genomes_project 11 124792690 124801941 + MGP_CASTEiJ_P0033681 Hgs protein_coding protein_coding MGP_CASTEiJ_T0033682.1 MGP_CASTEiJ_G0018807.1 mouse_genomes_project 11 124792690 124810038 + MGP_CASTEiJ_P0033682 Hgs protein_coding protein_coding MGP_CASTEiJ_T0033683.1 MGP_CASTEiJ_G0018807.1 mouse_genomes_project 11 124792690 124810038 + MGP_CASTEiJ_P0033683 Hgs protein_coding protein_coding MGP_CASTEiJ_T0033684.1 MGP_CASTEiJ_G0018807.1 mouse_genomes_project 11 124802123 124804791 + MGP_CASTEiJ_P0033684 Hgs protein_coding protein_coding MGP_CASTEiJ_T0032517.1 MGP_CASTEiJ_G0018582.1 mouse_genomes_project 11 107579366 107620282 + MGP_CASTEiJ_P0032517 Myl4 protein_coding protein_coding MGP_CASTEiJ_T0032518.1 MGP_CASTEiJ_G0018582.1 mouse_genomes_project 11 107609148 107620282 + MGP_CASTEiJ_P0032518 Myl4 protein_coding protein_coding MGP_CASTEiJ_T0032519.1 MGP_CASTEiJ_G0018582.1 mouse_genomes_project 11 107609180 107618080 + MGP_CASTEiJ_P0032519 Myl4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032520.1 MGP_CASTEiJ_G0018582.1 mouse_genomes_project 11 107610312 107620282 + MGP_CASTEiJ_P0032520 Myl4 protein_coding protein_coding MGP_CASTEiJ_T0032521.1 MGP_CASTEiJ_G0018582.1 mouse_genomes_project 11 107610452 107618814 + MGP_CASTEiJ_P0032521 Myl4 protein_coding protein_coding MGP_CASTEiJ_T0032522.1 MGP_CASTEiJ_G0018582.1 mouse_genomes_project 11 107613355 107620276 + Myl4 protein_coding retained_intron MGP_CASTEiJ_T0032523.1 MGP_CASTEiJ_G0018582.1 mouse_genomes_project 11 107615062 107619412 + Myl4 protein_coding retained_intron MGP_CASTEiJ_T0032524.1 MGP_CASTEiJ_G0018582.1 mouse_genomes_project 11 107615178 107620279 + MGP_CASTEiJ_P0032524 Myl4 protein_coding protein_coding MGP_CASTEiJ_T0031458.1 MGP_CASTEiJ_G0018323.1 mouse_genomes_project 11 99125033 99135880 - MGP_CASTEiJ_P0031458 Cdk5rap3 protein_coding protein_coding MGP_CASTEiJ_T0031459.1 MGP_CASTEiJ_G0018323.1 mouse_genomes_project 11 99125033 99135880 - MGP_CASTEiJ_P0031459 Cdk5rap3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031460.1 MGP_CASTEiJ_G0018323.1 mouse_genomes_project 11 99125422 99126361 - Cdk5rap3 protein_coding retained_intron MGP_CASTEiJ_T0031461.1 MGP_CASTEiJ_G0018323.1 mouse_genomes_project 11 99130848 99132270 - Cdk5rap3 protein_coding retained_intron MGP_CASTEiJ_T0031462.1 MGP_CASTEiJ_G0018323.1 mouse_genomes_project 11 99131345 99135776 - MGP_CASTEiJ_P0031462 Cdk5rap3 protein_coding protein_coding MGP_CASTEiJ_T0031463.1 MGP_CASTEiJ_G0018323.1 mouse_genomes_project 11 99131362 99135491 - MGP_CASTEiJ_P0031463 Cdk5rap3 protein_coding protein_coding MGP_CASTEiJ_T0031464.1 MGP_CASTEiJ_G0018323.1 mouse_genomes_project 11 99131384 99135813 - MGP_CASTEiJ_P0031464 Cdk5rap3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031465.1 MGP_CASTEiJ_G0018323.1 mouse_genomes_project 11 99131617 99135750 - MGP_CASTEiJ_P0031465 Cdk5rap3 protein_coding protein_coding MGP_CASTEiJ_T0031466.1 MGP_CASTEiJ_G0018323.1 mouse_genomes_project 11 99131638 99135798 - MGP_CASTEiJ_P0031466 Cdk5rap3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031467.1 MGP_CASTEiJ_G0018323.1 mouse_genomes_project 11 99131748 99135798 - MGP_CASTEiJ_P0031467 Cdk5rap3 protein_coding protein_coding MGP_CASTEiJ_T0031468.1 MGP_CASTEiJ_G0018323.1 mouse_genomes_project 11 99132085 99135751 - Cdk5rap3 protein_coding retained_intron MGP_CASTEiJ_T0009486.1 MGP_CASTEiJ_G0007674.1 mouse_genomes_project 11 98094502 98094594 - Mir3063 miRNA miRNA MGP_CASTEiJ_T0029989.1 MGP_CASTEiJ_G0017963.1 mouse_genomes_project 11 73590028 73598116 + MGP_CASTEiJ_P0029989 Tax1bp3 protein_coding protein_coding MGP_CASTEiJ_T0029990.1 MGP_CASTEiJ_G0017963.1 mouse_genomes_project 11 73590196 73595753 + Tax1bp3 protein_coding processed_transcript MGP_CASTEiJ_T0029991.1 MGP_CASTEiJ_G0017963.1 mouse_genomes_project 11 73590196 73599126 + Tax1bp3 protein_coding retained_intron MGP_CASTEiJ_T0029992.1 MGP_CASTEiJ_G0017963.1 mouse_genomes_project 11 73590215 73598011 + MGP_CASTEiJ_P0029992 Tax1bp3 protein_coding protein_coding MGP_CASTEiJ_T0032586.1 MGP_CASTEiJ_G0018596.1 mouse_genomes_project 11 109157641 109164956 + MGP_CASTEiJ_P0032586 Taco1 protein_coding protein_coding MGP_CASTEiJ_T0029754.1 MGP_CASTEiJ_G0017914.1 mouse_genomes_project 11 70827003 70829918 + MGP_CASTEiJ_P0029754 Gp1ba protein_coding protein_coding MGP_CASTEiJ_T0029755.1 MGP_CASTEiJ_G0017914.1 mouse_genomes_project 11 70827025 70829702 + MGP_CASTEiJ_P0029755 Gp1ba protein_coding protein_coding MGP_CASTEiJ_T0099219.1 MGP_CASTEiJ_G0036132.1 mouse_genomes_project 11 17577420 17577523 - Gm26253 snRNA snRNA MGP_CASTEiJ_T0028623.1 MGP_CASTEiJ_G0017650.1 mouse_genomes_project 11 55266266 55283038 - MGP_CASTEiJ_P0028623 Nmur2 protein_coding protein_coding MGP_CASTEiJ_T0006051.1 MGP_CASTEiJ_G0005065.1 mouse_genomes_project 11 31114053 31117488 + lincRNA lincRNA MGP_CASTEiJ_T0027607.1 MGP_CASTEiJ_G0017399.1 mouse_genomes_project 11 20557834 20572239 + MGP_CASTEiJ_P0027607 Cct4 protein_coding protein_coding MGP_CASTEiJ_T0027608.1 MGP_CASTEiJ_G0017399.1 mouse_genomes_project 11 20557941 20562794 + MGP_CASTEiJ_P0027608 Cct4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027609.1 MGP_CASTEiJ_G0017399.1 mouse_genomes_project 11 20557954 20568252 + Cct4 protein_coding retained_intron MGP_CASTEiJ_T0027610.1 MGP_CASTEiJ_G0017399.1 mouse_genomes_project 11 20557965 20565496 + MGP_CASTEiJ_P0027610 Cct4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027611.1 MGP_CASTEiJ_G0017399.1 mouse_genomes_project 11 20557965 20571605 + MGP_CASTEiJ_P0027611 Cct4 protein_coding protein_coding MGP_CASTEiJ_T0027612.1 MGP_CASTEiJ_G0017399.1 mouse_genomes_project 11 20557967 20565549 + MGP_CASTEiJ_P0027612 Cct4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027613.1 MGP_CASTEiJ_G0017399.1 mouse_genomes_project 11 20564025 20565501 + Cct4 protein_coding retained_intron MGP_CASTEiJ_T0027614.1 MGP_CASTEiJ_G0017399.1 mouse_genomes_project 11 20569303 20569984 + Cct4 protein_coding processed_transcript MGP_CASTEiJ_T0027615.1 MGP_CASTEiJ_G0017399.1 mouse_genomes_project 11 20570386 20571309 + Cct4 protein_coding retained_intron MGP_CASTEiJ_T0028561.1 MGP_CASTEiJ_G0017634.1 mouse_genomes_project 11 53869572 53941245 - MGP_CASTEiJ_P0028561 Cdc42se2 protein_coding protein_coding MGP_CASTEiJ_T0028562.1 MGP_CASTEiJ_G0017634.1 mouse_genomes_project 11 53875685 53941216 - MGP_CASTEiJ_P0028562 Cdc42se2 protein_coding protein_coding MGP_CASTEiJ_T0028563.1 MGP_CASTEiJ_G0017634.1 mouse_genomes_project 11 53891702 53941211 - Cdc42se2 protein_coding processed_transcript MGP_CASTEiJ_T0028564.1 MGP_CASTEiJ_G0017634.1 mouse_genomes_project 11 53892026 53941195 - Cdc42se2 protein_coding processed_transcript MGP_CASTEiJ_T0028565.1 MGP_CASTEiJ_G0017634.1 mouse_genomes_project 11 53892179 53913476 - Cdc42se2 protein_coding processed_transcript MGP_CASTEiJ_T0028055.1 MGP_CASTEiJ_G0017502.1 mouse_genomes_project 11 44408890 44451032 + MGP_CASTEiJ_P0028055 Clint1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028056.1 MGP_CASTEiJ_G0017502.1 mouse_genomes_project 11 44408947 44468049 + MGP_CASTEiJ_P0028056 Clint1 protein_coding protein_coding MGP_CASTEiJ_T0028057.1 MGP_CASTEiJ_G0017502.1 mouse_genomes_project 11 44408947 44468049 + MGP_CASTEiJ_P0028057 Clint1 protein_coding protein_coding MGP_CASTEiJ_T0028058.1 MGP_CASTEiJ_G0017502.1 mouse_genomes_project 11 44439201 44468049 + Clint1 protein_coding processed_transcript MGP_CASTEiJ_T0101982.1 MGP_CASTEiJ_G0038707.1 mouse_genomes_project 11 53040464 53040636 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0029967.1 MGP_CASTEiJ_G0017955.1 mouse_genomes_project 11 73360652 73394017 + MGP_CASTEiJ_P0029967 Atp2a3 protein_coding protein_coding MGP_CASTEiJ_T0029968.1 MGP_CASTEiJ_G0017955.1 mouse_genomes_project 11 73360652 73394016 + MGP_CASTEiJ_P0029968 Atp2a3 protein_coding protein_coding MGP_CASTEiJ_T0029969.1 MGP_CASTEiJ_G0017955.1 mouse_genomes_project 11 73360773 73370208 + Atp2a3 protein_coding retained_intron MGP_CASTEiJ_T0029970.1 MGP_CASTEiJ_G0017955.1 mouse_genomes_project 11 73360837 73394017 + MGP_CASTEiJ_P0029970 Atp2a3 protein_coding protein_coding MGP_CASTEiJ_T0029971.1 MGP_CASTEiJ_G0017955.1 mouse_genomes_project 11 73383035 73384484 + Atp2a3 protein_coding processed_transcript MGP_CASTEiJ_T0003201.1 MGP_CASTEiJ_G0002965.1 mouse_genomes_project 11 107251523 107262386 - Gm11659 antisense antisense MGP_CASTEiJ_T0030163.1 MGP_CASTEiJ_G0018022.1 mouse_genomes_project 11 76060936 76064011 + MGP_CASTEiJ_P0030163 Rilp protein_coding protein_coding MGP_CASTEiJ_T0030164.1 MGP_CASTEiJ_G0018022.1 mouse_genomes_project 11 76061309 76064006 + Rilp protein_coding retained_intron MGP_CASTEiJ_T0028477.1 MGP_CASTEiJ_G0017616.1 mouse_genomes_project 11 52688746 52702753 - Il4 protein_coding processed_transcript MGP_CASTEiJ_T0028478.1 MGP_CASTEiJ_G0017616.1 mouse_genomes_project 11 52698104 52704226 - MGP_CASTEiJ_P0028478 Il4 protein_coding protein_coding MGP_CASTEiJ_T0028479.1 MGP_CASTEiJ_G0017616.1 mouse_genomes_project 11 52698104 52702867 - MGP_CASTEiJ_P0028479 Il4 protein_coding protein_coding MGP_CASTEiJ_T0028480.1 MGP_CASTEiJ_G0017616.1 mouse_genomes_project 11 52698104 52703909 - MGP_CASTEiJ_P0028480 Il4 protein_coding protein_coding MGP_CASTEiJ_T0099274.1 MGP_CASTEiJ_G0036187.1 mouse_genomes_project 11 101454107 101454214 + Gm22061 snRNA snRNA MGP_CASTEiJ_T0029258.1 MGP_CASTEiJ_G0017807.1 mouse_genomes_project 11 67934230 68189035 + MGP_CASTEiJ_P0029258 Stx8 protein_coding protein_coding MGP_CASTEiJ_T0029259.1 MGP_CASTEiJ_G0017807.1 mouse_genomes_project 11 67934517 67942636 + MGP_CASTEiJ_P0029259 Stx8 protein_coding protein_coding MGP_CASTEiJ_T0029260.1 MGP_CASTEiJ_G0017807.1 mouse_genomes_project 11 67934527 68186137 + Stx8 protein_coding processed_transcript MGP_CASTEiJ_T0029261.1 MGP_CASTEiJ_G0017807.1 mouse_genomes_project 11 67934529 67942509 + Stx8 protein_coding processed_transcript MGP_CASTEiJ_T0029262.1 MGP_CASTEiJ_G0017807.1 mouse_genomes_project 11 67934543 67941684 + Stx8 protein_coding processed_transcript MGP_CASTEiJ_T0003165.1 MGP_CASTEiJ_G0002935.1 mouse_genomes_project 11 98503676 98509552 - Gm11536 antisense antisense MGP_CASTEiJ_T0099261.1 MGP_CASTEiJ_G0036174.1 mouse_genomes_project 11 88776212 88776318 - Gm22883 snRNA snRNA MGP_CASTEiJ_T0029279.1 MGP_CASTEiJ_G0017813.1 mouse_genomes_project 11 68712358 68720043 + Myh10 protein_coding processed_transcript MGP_CASTEiJ_T0029280.1 MGP_CASTEiJ_G0017813.1 mouse_genomes_project 11 68712715 68842948 + MGP_CASTEiJ_P0029280 Myh10 protein_coding protein_coding MGP_CASTEiJ_T0029281.1 MGP_CASTEiJ_G0017813.1 mouse_genomes_project 11 68712878 68720202 + Myh10 protein_coding processed_transcript MGP_CASTEiJ_T0029282.1 MGP_CASTEiJ_G0017813.1 mouse_genomes_project 11 68712881 68769023 + MGP_CASTEiJ_P0029282 Myh10 protein_coding protein_coding MGP_CASTEiJ_T0029283.1 MGP_CASTEiJ_G0017813.1 mouse_genomes_project 11 68712912 68842928 + MGP_CASTEiJ_P0029283 Myh10 protein_coding protein_coding MGP_CASTEiJ_T0029284.1 MGP_CASTEiJ_G0017813.1 mouse_genomes_project 11 68712954 68793469 + Myh10 protein_coding retained_intron MGP_CASTEiJ_T0029285.1 MGP_CASTEiJ_G0017813.1 mouse_genomes_project 11 68713116 68842940 + MGP_CASTEiJ_P0029285 Myh10 protein_coding protein_coding MGP_CASTEiJ_T0029286.1 MGP_CASTEiJ_G0017813.1 mouse_genomes_project 11 68807272 68813912 + Myh10 protein_coding processed_transcript MGP_CASTEiJ_T0029287.1 MGP_CASTEiJ_G0017813.1 mouse_genomes_project 11 68836959 68838527 + Myh10 protein_coding processed_transcript MGP_CASTEiJ_T0029288.1 MGP_CASTEiJ_G0017813.1 mouse_genomes_project 11 68839884 68842860 + Myh10 protein_coding processed_transcript MGP_CASTEiJ_T0027286.1 MGP_CASTEiJ_G0017326.1 mouse_genomes_project 11 2832650 2838761 - MGP_CASTEiJ_P0027286 Pold2 protein_coding protein_coding MGP_CASTEiJ_T0027287.1 MGP_CASTEiJ_G0017326.1 mouse_genomes_project 11 2832658 2833662 - Pold2 protein_coding retained_intron MGP_CASTEiJ_T0027288.1 MGP_CASTEiJ_G0017326.1 mouse_genomes_project 11 2834546 2838142 - MGP_CASTEiJ_P0027288 Pold2 protein_coding protein_coding MGP_CASTEiJ_T0027289.1 MGP_CASTEiJ_G0017326.1 mouse_genomes_project 11 2834583 2837241 - Pold2 protein_coding retained_intron MGP_CASTEiJ_T0027290.1 MGP_CASTEiJ_G0017326.1 mouse_genomes_project 11 2835646 2838681 - Pold2 protein_coding processed_transcript MGP_CASTEiJ_T0012326.1 MGP_CASTEiJ_G0010489.1 mouse_genomes_project 11 79491954 79492976 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010979.1 MGP_CASTEiJ_G0009167.1 mouse_genomes_project 11 90777365 90777627 - Gm24734 misc_RNA misc_RNA MGP_CASTEiJ_T0031721.1 MGP_CASTEiJ_G0018382.1 mouse_genomes_project 11 101272056 101304109 + MGP_CASTEiJ_P0031721 Msl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031722.1 MGP_CASTEiJ_G0018382.1 mouse_genomes_project 11 101294100 101306368 + MGP_CASTEiJ_P0031722 Msl1 protein_coding protein_coding MGP_CASTEiJ_T0031723.1 MGP_CASTEiJ_G0018382.1 mouse_genomes_project 11 101294375 101299586 + MGP_CASTEiJ_P0031723 Msl1 protein_coding protein_coding MGP_CASTEiJ_T0031724.1 MGP_CASTEiJ_G0018382.1 mouse_genomes_project 11 101294384 101304951 + MGP_CASTEiJ_P0031724 Msl1 protein_coding protein_coding MGP_CASTEiJ_T0031725.1 MGP_CASTEiJ_G0018382.1 mouse_genomes_project 11 101297236 101304124 + MGP_CASTEiJ_P0031725 Msl1 protein_coding protein_coding MGP_CASTEiJ_T0031726.1 MGP_CASTEiJ_G0018382.1 mouse_genomes_project 11 101298698 101302647 + MGP_CASTEiJ_P0031726 Msl1 protein_coding protein_coding MGP_CASTEiJ_T0031727.1 MGP_CASTEiJ_G0018382.1 mouse_genomes_project 11 101302798 101304296 + Msl1 protein_coding processed_transcript MGP_CASTEiJ_T0029137.1 MGP_CASTEiJ_G0017774.1 mouse_genomes_project 11 62629575 62645262 + MGP_CASTEiJ_P0029137 Tvp23b protein_coding protein_coding MGP_CASTEiJ_T0029138.1 MGP_CASTEiJ_G0017774.1 mouse_genomes_project 11 62629610 62642180 + Tvp23b protein_coding processed_transcript MGP_CASTEiJ_T0029139.1 MGP_CASTEiJ_G0017774.1 mouse_genomes_project 11 62629734 62635455 + Tvp23b protein_coding processed_transcript MGP_CASTEiJ_T0029140.1 MGP_CASTEiJ_G0017774.1 mouse_genomes_project 11 62633777 62666735 + Tvp23b protein_coding processed_transcript MGP_CASTEiJ_T0027195.1 MGP_CASTEiJ_G0017308.1 mouse_genomes_project 11 1843307 1852674 - MGP_CASTEiJ_P0027195 Nefh protein_coding protein_coding MGP_CASTEiJ_T0027196.1 MGP_CASTEiJ_G0017308.1 mouse_genomes_project 11 1843802 1852605 - MGP_CASTEiJ_P0027196 Nefh protein_coding unknown_likely_coding MGP_CASTEiJ_T0099246.1 MGP_CASTEiJ_G0036159.1 mouse_genomes_project 11 73276867 73277029 + Gm26121 snRNA snRNA MGP_CASTEiJ_T0098736.1 MGP_CASTEiJ_G0035667.1 mouse_genomes_project 11 9184877 9185005 - Gm25058 scaRNA scaRNA MGP_CASTEiJ_T0032946.1 MGP_CASTEiJ_G0018676.1 mouse_genomes_project 11 118970366 118987998 - MGP_CASTEiJ_P0032946 Cd300lf protein_coding unknown_likely_coding MGP_CASTEiJ_T0032947.1 MGP_CASTEiJ_G0018676.1 mouse_genomes_project 11 118970369 118988109 - MGP_CASTEiJ_P0032947 Cd300lf protein_coding protein_coding MGP_CASTEiJ_T0032948.1 MGP_CASTEiJ_G0018676.1 mouse_genomes_project 11 118970369 118988109 - MGP_CASTEiJ_P0032948 Cd300lf protein_coding protein_coding MGP_CASTEiJ_T0032949.1 MGP_CASTEiJ_G0018676.1 mouse_genomes_project 11 118970369 118988109 - MGP_CASTEiJ_P0032949 Cd300lf protein_coding protein_coding MGP_CASTEiJ_T0032950.1 MGP_CASTEiJ_G0018676.1 mouse_genomes_project 11 118973029 118988108 - Cd300lf protein_coding processed_transcript MGP_CASTEiJ_T0032951.1 MGP_CASTEiJ_G0018676.1 mouse_genomes_project 11 118974472 118980986 - Cd300lf protein_coding processed_transcript MGP_CASTEiJ_T0032952.1 MGP_CASTEiJ_G0018676.1 mouse_genomes_project 11 118974556 118980933 - Cd300lf protein_coding processed_transcript MGP_CASTEiJ_T0032953.1 MGP_CASTEiJ_G0018676.1 mouse_genomes_project 11 118974568 118980927 - Cd300lf protein_coding processed_transcript MGP_CASTEiJ_T0012246.1 MGP_CASTEiJ_G0010409.1 mouse_genomes_project 11 52249628 52250003 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032318.1 MGP_CASTEiJ_G0018541.1 mouse_genomes_project 11 105284295 105294993 - MGP_CASTEiJ_P0032318 Fam171a2 protein_coding protein_coding MGP_CASTEiJ_T0032319.1 MGP_CASTEiJ_G0018541.1 mouse_genomes_project 11 105284499 105294853 - MGP_CASTEiJ_P0032319 Fam171a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032320.1 MGP_CASTEiJ_G0018541.1 mouse_genomes_project 11 105286062 105287100 - Fam171a2 protein_coding processed_transcript MGP_CASTEiJ_T0032321.1 MGP_CASTEiJ_G0018541.1 mouse_genomes_project 11 105287555 105294905 - Fam171a2 protein_coding processed_transcript MGP_CASTEiJ_T0027662.1 MGP_CASTEiJ_G0017407.1 mouse_genomes_project 11 21241685 21248548 + protein_coding retained_intron MGP_CASTEiJ_T0027663.1 MGP_CASTEiJ_G0017407.1 mouse_genomes_project 11 21241899 21311019 + MGP_CASTEiJ_P0027663 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027664.1 MGP_CASTEiJ_G0017407.1 mouse_genomes_project 11 21242008 21248434 + MGP_CASTEiJ_P0027664 protein_coding protein_coding MGP_CASTEiJ_T0027665.1 MGP_CASTEiJ_G0017407.1 mouse_genomes_project 11 21296160 21307913 + protein_coding retained_intron MGP_CASTEiJ_T0027666.1 MGP_CASTEiJ_G0017407.1 mouse_genomes_project 11 21297251 21310632 + protein_coding retained_intron MGP_CASTEiJ_T0009452.1 MGP_CASTEiJ_G0007640.1 mouse_genomes_project 11 70107493 70107616 + Gm44349 miRNA miRNA MGP_CASTEiJ_T0031268.1 MGP_CASTEiJ_G0018271.1 mouse_genomes_project 11 96478623 96529998 - MGP_CASTEiJ_P0031268 Acsf2 protein_coding protein_coding MGP_CASTEiJ_T0031270.1 MGP_CASTEiJ_G0018271.1 mouse_genomes_project 11 96490869 96492341 - Acsf2 protein_coding processed_transcript MGP_CASTEiJ_T0031271.1 MGP_CASTEiJ_G0018271.1 mouse_genomes_project 11 96491853 96529896 - Acsf2 protein_coding processed_transcript MGP_CASTEiJ_T0016413.1 MGP_CASTEiJ_G0014462.1 mouse_genomes_project 11 358415 364780 + Gm11946 processed_transcript processed_transcript MGP_CASTEiJ_T0016414.1 MGP_CASTEiJ_G0014462.1 mouse_genomes_project 11 359204 365201 + Gm11946 processed_transcript processed_transcript MGP_CASTEiJ_T0003013.1 MGP_CASTEiJ_G0002811.1 mouse_genomes_project 11 8811542 8833245 + Gm11998 antisense antisense MGP_CASTEiJ_T0012383.1 MGP_CASTEiJ_G0010546.1 mouse_genomes_project 11 104731568 104732872 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006048.1 MGP_CASTEiJ_G0005062.1 mouse_genomes_project 11 30032225 30038195 - Gm12108 lincRNA lincRNA MGP_CASTEiJ_T0031820.1 MGP_CASTEiJ_G0018433.1 mouse_genomes_project 11 102505722 102517959 + MGP_CASTEiJ_P0031820 Krtap31-2 protein_coding protein_coding MGP_CASTEiJ_T0028247.1 MGP_CASTEiJ_G0017559.1 mouse_genomes_project 11 49018869 49060430 - MGP_CASTEiJ_P0028247 Maml1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028248.1 MGP_CASTEiJ_G0017559.1 mouse_genomes_project 11 49018869 49060639 - MGP_CASTEiJ_P0028248 Maml1 protein_coding protein_coding MGP_CASTEiJ_T0028249.1 MGP_CASTEiJ_G0017559.1 mouse_genomes_project 11 49018870 49060132 - MGP_CASTEiJ_P0028249 Maml1 protein_coding protein_coding MGP_CASTEiJ_T0032247.1 MGP_CASTEiJ_G0018532.1 mouse_genomes_project 11 105062812 105080413 + MGP_CASTEiJ_P0032247 BC030867 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032248.1 MGP_CASTEiJ_G0018532.1 mouse_genomes_project 11 105062812 105080413 + MGP_CASTEiJ_P0032248 BC030867 protein_coding protein_coding MGP_CASTEiJ_T0032249.1 MGP_CASTEiJ_G0018532.1 mouse_genomes_project 11 105069443 105074429 + BC030867 protein_coding processed_transcript MGP_CASTEiJ_T0032250.1 MGP_CASTEiJ_G0018532.1 mouse_genomes_project 11 105069447 105074427 + BC030867 protein_coding processed_transcript MGP_CASTEiJ_T0032251.1 MGP_CASTEiJ_G0018532.1 mouse_genomes_project 11 105075775 105080413 + BC030867 protein_coding processed_transcript MGP_CASTEiJ_T0016487.1 MGP_CASTEiJ_G0014501.1 mouse_genomes_project 11 79048364 79049469 - Gm11193 processed_transcript processed_transcript MGP_CASTEiJ_T0012295.1 MGP_CASTEiJ_G0010458.1 mouse_genomes_project 11 69722838 69723020 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031052.1 MGP_CASTEiJ_G0018224.1 mouse_genomes_project 11 89366519 89377715 - MGP_CASTEiJ_P0031052 Epx protein_coding protein_coding MGP_CASTEiJ_T0031053.1 MGP_CASTEiJ_G0018224.1 mouse_genomes_project 11 89371670 89373987 - Epx protein_coding processed_transcript MGP_CASTEiJ_T0003174.1 MGP_CASTEiJ_G0002943.1 mouse_genomes_project 11 100791853 100792863 + Gm12352 antisense antisense MGP_CASTEiJ_T0033893.1 MGP_CASTEiJ_G0018849.1 mouse_genomes_project 11 125741322 125773045 - MGP_CASTEiJ_P0033893 Rab40b protein_coding protein_coding MGP_CASTEiJ_T0033894.1 MGP_CASTEiJ_G0018849.1 mouse_genomes_project 11 125743207 125772859 - Rab40b protein_coding processed_transcript MGP_CASTEiJ_T0033895.1 MGP_CASTEiJ_G0018849.1 mouse_genomes_project 11 125744792 125773015 - Rab40b protein_coding processed_transcript MGP_CASTEiJ_T0033896.1 MGP_CASTEiJ_G0018849.1 mouse_genomes_project 11 125744811 125773024 - Rab40b protein_coding processed_transcript MGP_CASTEiJ_T0031772.1 MGP_CASTEiJ_G0018394.1 mouse_genomes_project 11 101740099 101761751 - MGP_CASTEiJ_P0031772 Smarce1 protein_coding protein_coding MGP_CASTEiJ_T0031773.1 MGP_CASTEiJ_G0018394.1 mouse_genomes_project 11 101741054 101744109 - Smarce1 protein_coding processed_transcript MGP_CASTEiJ_T0031774.1 MGP_CASTEiJ_G0018394.1 mouse_genomes_project 11 101749893 101751525 - Smarce1 protein_coding processed_transcript MGP_CASTEiJ_T0031775.1 MGP_CASTEiJ_G0018394.1 mouse_genomes_project 11 101750311 101761179 - Smarce1 protein_coding processed_transcript MGP_CASTEiJ_T0031776.1 MGP_CASTEiJ_G0018394.1 mouse_genomes_project 11 101750391 101761147 - Smarce1 protein_coding processed_transcript MGP_CASTEiJ_T0031777.1 MGP_CASTEiJ_G0018394.1 mouse_genomes_project 11 101756025 101761180 - Smarce1 protein_coding processed_transcript MGP_CASTEiJ_T0016482.1 MGP_CASTEiJ_G0014498.1 mouse_genomes_project 11 76006604 76011712 + Mir22hg processed_transcript processed_transcript MGP_CASTEiJ_T0016483.1 MGP_CASTEiJ_G0014498.1 mouse_genomes_project 11 76006709 76009095 + Mir22hg processed_transcript processed_transcript MGP_CASTEiJ_T0033255.1 MGP_CASTEiJ_G0018730.1 mouse_genomes_project 11 120434106 120439147 + MGP_CASTEiJ_P0033255 Ubald2 protein_coding protein_coding MGP_CASTEiJ_T0033257.1 MGP_CASTEiJ_G0018730.1 mouse_genomes_project 11 120434541 120438295 + Ubald2 protein_coding processed_transcript MGP_CASTEiJ_T0028153.1 MGP_CASTEiJ_G0017536.1 mouse_genomes_project 11 47897160 47898099 + MGP_CASTEiJ_P0028153 Olfr1394 protein_coding protein_coding MGP_CASTEiJ_T0029499.1 MGP_CASTEiJ_G0017861.1 mouse_genomes_project 11 69874705 69889976 + MGP_CASTEiJ_P0029499 Zbtb4 protein_coding protein_coding MGP_CASTEiJ_T0029500.1 MGP_CASTEiJ_G0017861.1 mouse_genomes_project 11 69874705 69893787 + MGP_CASTEiJ_P0029500 Zbtb4 protein_coding protein_coding MGP_CASTEiJ_T0029501.1 MGP_CASTEiJ_G0017861.1 mouse_genomes_project 11 69874777 69891716 + MGP_CASTEiJ_P0029501 Zbtb4 protein_coding protein_coding MGP_CASTEiJ_T0029502.1 MGP_CASTEiJ_G0017861.1 mouse_genomes_project 11 69874780 69891723 + MGP_CASTEiJ_P0029502 Zbtb4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029503.1 MGP_CASTEiJ_G0017861.1 mouse_genomes_project 11 69874799 69888079 + MGP_CASTEiJ_P0029503 Zbtb4 protein_coding protein_coding MGP_CASTEiJ_T0029504.1 MGP_CASTEiJ_G0017861.1 mouse_genomes_project 11 69875232 69885808 + MGP_CASTEiJ_P0029504 Zbtb4 protein_coding protein_coding MGP_CASTEiJ_T0029505.1 MGP_CASTEiJ_G0017861.1 mouse_genomes_project 11 69875327 69885792 + MGP_CASTEiJ_P0029505 Zbtb4 protein_coding protein_coding MGP_CASTEiJ_T0029506.1 MGP_CASTEiJ_G0017861.1 mouse_genomes_project 11 69885175 69889440 + MGP_CASTEiJ_P0029506 Zbtb4 protein_coding protein_coding MGP_CASTEiJ_T0099262.1 MGP_CASTEiJ_G0036175.1 mouse_genomes_project 11 88886727 88886891 + Rnu1a1 snRNA snRNA MGP_CASTEiJ_T0028670.1 MGP_CASTEiJ_G0017666.1 mouse_genomes_project 11 57670751 57678984 - MGP_CASTEiJ_P0028670 Zfp672 protein_coding protein_coding MGP_CASTEiJ_T0028671.1 MGP_CASTEiJ_G0017666.1 mouse_genomes_project 11 57670761 57678961 - MGP_CASTEiJ_P0028671 Zfp672 protein_coding protein_coding MGP_CASTEiJ_T0028672.1 MGP_CASTEiJ_G0017666.1 mouse_genomes_project 11 57670853 57678751 - MGP_CASTEiJ_P0028672 Zfp672 protein_coding protein_coding MGP_CASTEiJ_T0028673.1 MGP_CASTEiJ_G0017666.1 mouse_genomes_project 11 57672862 57685969 - MGP_CASTEiJ_P0028673 Zfp672 protein_coding protein_coding MGP_CASTEiJ_T0028674.1 MGP_CASTEiJ_G0017666.1 mouse_genomes_project 11 57672964 57675592 - MGP_CASTEiJ_P0028674 Zfp672 protein_coding protein_coding MGP_CASTEiJ_T0028675.1 MGP_CASTEiJ_G0017666.1 mouse_genomes_project 11 57675341 57678952 - Zfp672 protein_coding processed_transcript MGP_CASTEiJ_T0028676.1 MGP_CASTEiJ_G0017666.1 mouse_genomes_project 11 57675375 57678952 - Zfp672 protein_coding processed_transcript MGP_CASTEiJ_T0028677.1 MGP_CASTEiJ_G0017666.1 mouse_genomes_project 11 57682852 57685977 - Zfp672 protein_coding retained_intron MGP_CASTEiJ_T0028678.1 MGP_CASTEiJ_G0017666.1 mouse_genomes_project 11 57683358 57685977 - MGP_CASTEiJ_P0028678 Zfp672 protein_coding protein_coding MGP_CASTEiJ_T0029040.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61630530 61801140 + Specc1 protein_coding retained_intron MGP_CASTEiJ_T0029041.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61630530 61819707 + MGP_CASTEiJ_P0029041 Specc1 protein_coding protein_coding MGP_CASTEiJ_T0029042.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61630546 61820116 + MGP_CASTEiJ_P0029042 Specc1 protein_coding protein_coding MGP_CASTEiJ_T0029043.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61630577 61724769 + Specc1 protein_coding retained_intron MGP_CASTEiJ_T0029044.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61630582 61901111 + MGP_CASTEiJ_P0029044 Specc1 protein_coding protein_coding MGP_CASTEiJ_T0029045.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61653314 61754207 + Specc1 protein_coding processed_transcript MGP_CASTEiJ_T0029046.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61686177 61819707 + MGP_CASTEiJ_P0029046 Specc1 protein_coding protein_coding MGP_CASTEiJ_T0029047.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61699305 61823336 + MGP_CASTEiJ_P0029047 Specc1 protein_coding protein_coding MGP_CASTEiJ_T0029048.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61699321 61902348 + MGP_CASTEiJ_P0029048 Specc1 protein_coding protein_coding MGP_CASTEiJ_T0029049.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61709506 61903396 + MGP_CASTEiJ_P0029049 Specc1 protein_coding protein_coding MGP_CASTEiJ_T0029050.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61709529 61905279 + MGP_CASTEiJ_P0029050 Specc1 protein_coding protein_coding MGP_CASTEiJ_T0029051.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61757491 61905271 + MGP_CASTEiJ_P0029051 Specc1 protein_coding protein_coding MGP_CASTEiJ_T0029052.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61757495 61901260 + MGP_CASTEiJ_P0029052 Specc1 protein_coding protein_coding MGP_CASTEiJ_T0029053.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61757541 61758806 + Specc1 protein_coding retained_intron MGP_CASTEiJ_T0029054.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61757555 61819720 + MGP_CASTEiJ_P0029054 Specc1 protein_coding protein_coding MGP_CASTEiJ_T0029055.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61757587 61820115 + MGP_CASTEiJ_P0029055 Specc1 protein_coding protein_coding MGP_CASTEiJ_T0029056.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61757657 61902315 + MGP_CASTEiJ_P0029056 Specc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029057.1 MGP_CASTEiJ_G0017759.1 mouse_genomes_project 11 61757661 61902315 + MGP_CASTEiJ_P0029057 Specc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006140.1 MGP_CASTEiJ_G0005136.1 mouse_genomes_project 11 89247587 89249274 + Mir142hg lincRNA lincRNA MGP_CASTEiJ_T0028807.1 MGP_CASTEiJ_G0017715.1 mouse_genomes_project 11 59290968 59294715 - Pld6 protein_coding processed_transcript MGP_CASTEiJ_T0028808.1 MGP_CASTEiJ_G0017715.1 mouse_genomes_project 11 59291771 59294712 - MGP_CASTEiJ_P0028808 Pld6 protein_coding protein_coding MGP_CASTEiJ_T0030261.1 MGP_CASTEiJ_G0018042.1 mouse_genomes_project 11 77026173 77124219 - MGP_CASTEiJ_P0030261 Abr protein_coding protein_coding MGP_CASTEiJ_T0030262.1 MGP_CASTEiJ_G0018042.1 mouse_genomes_project 11 77026173 77181622 - MGP_CASTEiJ_P0030262 Abr protein_coding protein_coding MGP_CASTEiJ_T0030263.1 MGP_CASTEiJ_G0018042.1 mouse_genomes_project 11 77026174 77123795 - MGP_CASTEiJ_P0030263 Abr protein_coding protein_coding MGP_CASTEiJ_T0030264.1 MGP_CASTEiJ_G0018042.1 mouse_genomes_project 11 77026190 77080272 - MGP_CASTEiJ_P0030264 Abr protein_coding protein_coding MGP_CASTEiJ_T0030265.1 MGP_CASTEiJ_G0018042.1 mouse_genomes_project 11 77028544 77109136 - MGP_CASTEiJ_P0030265 Abr protein_coding protein_coding MGP_CASTEiJ_T0030266.1 MGP_CASTEiJ_G0018042.1 mouse_genomes_project 11 77032491 77046644 - Abr protein_coding processed_transcript MGP_CASTEiJ_T0030267.1 MGP_CASTEiJ_G0018042.1 mouse_genomes_project 11 77064086 77080103 - MGP_CASTEiJ_P0030267 Abr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030268.1 MGP_CASTEiJ_G0018042.1 mouse_genomes_project 11 77068048 77106467 - Abr protein_coding retained_intron MGP_CASTEiJ_T0030269.1 MGP_CASTEiJ_G0018042.1 mouse_genomes_project 11 77076075 77105383 - MGP_CASTEiJ_P0030269 Abr protein_coding protein_coding MGP_CASTEiJ_T0030270.1 MGP_CASTEiJ_G0018042.1 mouse_genomes_project 11 77090703 77187812 - MGP_CASTEiJ_P0030270 Abr protein_coding protein_coding MGP_CASTEiJ_T0030271.1 MGP_CASTEiJ_G0018042.1 mouse_genomes_project 11 77090757 77235297 - MGP_CASTEiJ_P0030271 Abr protein_coding protein_coding MGP_CASTEiJ_T0030272.1 MGP_CASTEiJ_G0018042.1 mouse_genomes_project 11 77090813 77224988 - MGP_CASTEiJ_P0030272 Abr protein_coding protein_coding MGP_CASTEiJ_T0030273.1 MGP_CASTEiJ_G0018042.1 mouse_genomes_project 11 77097396 77106446 - Abr protein_coding processed_transcript MGP_CASTEiJ_T0033558.1 MGP_CASTEiJ_G0018787.1 mouse_genomes_project 11 123802998 123812033 - MGP_CASTEiJ_P0033558 Nptx1 protein_coding protein_coding MGP_CASTEiJ_T0033343.1 MGP_CASTEiJ_G0018746.1 mouse_genomes_project 11 120901438 120923436 + MGP_CASTEiJ_P0033343 Mfsd11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033344.1 MGP_CASTEiJ_G0018746.1 mouse_genomes_project 11 120902293 120907947 + Mfsd11 protein_coding retained_intron MGP_CASTEiJ_T0033345.1 MGP_CASTEiJ_G0018746.1 mouse_genomes_project 11 120902473 120903058 + Mfsd11 protein_coding processed_transcript MGP_CASTEiJ_T0033346.1 MGP_CASTEiJ_G0018746.1 mouse_genomes_project 11 120902761 120923443 + MGP_CASTEiJ_P0033346 Mfsd11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033347.1 MGP_CASTEiJ_G0018746.1 mouse_genomes_project 11 120902778 120903256 + Mfsd11 protein_coding retained_intron MGP_CASTEiJ_T0033348.1 MGP_CASTEiJ_G0018746.1 mouse_genomes_project 11 120902828 120903722 + Mfsd11 protein_coding retained_intron MGP_CASTEiJ_T0033349.1 MGP_CASTEiJ_G0018746.1 mouse_genomes_project 11 120902882 120922814 + MGP_CASTEiJ_P0033349 Mfsd11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033350.1 MGP_CASTEiJ_G0018746.1 mouse_genomes_project 11 120902894 120924199 + MGP_CASTEiJ_P0033350 Mfsd11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033351.1 MGP_CASTEiJ_G0018746.1 mouse_genomes_project 11 120903025 120922886 + MGP_CASTEiJ_P0033351 Mfsd11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033352.1 MGP_CASTEiJ_G0018746.1 mouse_genomes_project 11 120903077 120922664 + MGP_CASTEiJ_P0033352 Mfsd11 protein_coding protein_coding MGP_CASTEiJ_T0033353.1 MGP_CASTEiJ_G0018746.1 mouse_genomes_project 11 120907971 120910488 + Mfsd11 protein_coding retained_intron MGP_CASTEiJ_T0033354.1 MGP_CASTEiJ_G0018746.1 mouse_genomes_project 11 120917211 120922556 + Mfsd11 protein_coding processed_transcript MGP_CASTEiJ_T0098324.1 MGP_CASTEiJ_G0035255.1 mouse_genomes_project 11 70719186 70719764 - pseudogene pseudogene MGP_CASTEiJ_T0009511.1 MGP_CASTEiJ_G0007699.1 mouse_genomes_project 11 109940916 109941017 - Gm25994 miRNA miRNA MGP_CASTEiJ_T0028571.1 MGP_CASTEiJ_G0017636.1 mouse_genomes_project 11 54025759 54029877 + MGP_CASTEiJ_P0028571 Hint1 protein_coding protein_coding MGP_CASTEiJ_T0028572.1 MGP_CASTEiJ_G0017636.1 mouse_genomes_project 11 54025857 54029683 + MGP_CASTEiJ_P0028572 Hint1 protein_coding protein_coding MGP_CASTEiJ_T0099228.1 MGP_CASTEiJ_G0036141.1 mouse_genomes_project 11 36866616 36866723 + Gm23520 snRNA snRNA MGP_CASTEiJ_T0028099.1 MGP_CASTEiJ_G0017516.1 mouse_genomes_project 11 45213602 45245497 - MGP_CASTEiJ_P0028099 Dppa1 protein_coding protein_coding MGP_CASTEiJ_T0028100.1 MGP_CASTEiJ_G0017516.1 mouse_genomes_project 11 45214541 45245497 - MGP_CASTEiJ_P0028100 Dppa1 protein_coding protein_coding MGP_CASTEiJ_T0029157.1 MGP_CASTEiJ_G0017782.1 mouse_genomes_project 11 64812211 64858737 + MGP_CASTEiJ_P0029157 Elac2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029158.1 MGP_CASTEiJ_G0017782.1 mouse_genomes_project 11 64837061 64859199 + MGP_CASTEiJ_P0029158 Elac2 protein_coding protein_coding MGP_CASTEiJ_T0029159.1 MGP_CASTEiJ_G0017782.1 mouse_genomes_project 11 64837094 64858456 + MGP_CASTEiJ_P0029159 Elac2 protein_coding protein_coding MGP_CASTEiJ_T0029160.1 MGP_CASTEiJ_G0017782.1 mouse_genomes_project 11 64837095 64838651 + Elac2 protein_coding processed_transcript MGP_CASTEiJ_T0029161.1 MGP_CASTEiJ_G0017782.1 mouse_genomes_project 11 64837097 64858729 + MGP_CASTEiJ_P0029161 Elac2 protein_coding protein_coding MGP_CASTEiJ_T0029162.1 MGP_CASTEiJ_G0017782.1 mouse_genomes_project 11 64837114 64859197 + Elac2 protein_coding processed_transcript MGP_CASTEiJ_T0029163.1 MGP_CASTEiJ_G0017782.1 mouse_genomes_project 11 64843450 64850459 + MGP_CASTEiJ_P0029163 Elac2 protein_coding protein_coding MGP_CASTEiJ_T0029164.1 MGP_CASTEiJ_G0017782.1 mouse_genomes_project 11 64857463 64859018 + Elac2 protein_coding processed_transcript MGP_CASTEiJ_T0031824.1 MGP_CASTEiJ_G0018437.1 mouse_genomes_project 11 102595942 102597830 - MGP_CASTEiJ_P0031824 Krtap16-1 protein_coding protein_coding MGP_CASTEiJ_T0027923.1 MGP_CASTEiJ_G0017469.1 mouse_genomes_project 11 32338096 32341855 - MGP_CASTEiJ_P0027923 Foxi1 protein_coding protein_coding MGP_CASTEiJ_T0003016.1 MGP_CASTEiJ_G0002814.1 mouse_genomes_project 11 9578816 9602449 + Gm12002 antisense antisense MGP_CASTEiJ_T0003017.1 MGP_CASTEiJ_G0002814.1 mouse_genomes_project 11 9578835 9601146 + Gm12002 antisense antisense MGP_CASTEiJ_T0003018.1 MGP_CASTEiJ_G0002814.1 mouse_genomes_project 11 9586528 9615823 + Gm12002 antisense antisense MGP_CASTEiJ_T0028418.1 MGP_CASTEiJ_G0017600.1 mouse_genomes_project 11 51354024 51387120 + MGP_CASTEiJ_P0028418 Vdac1 protein_coding protein_coding MGP_CASTEiJ_T0028419.1 MGP_CASTEiJ_G0017600.1 mouse_genomes_project 11 51354299 51386227 + MGP_CASTEiJ_P0028419 Vdac1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028420.1 MGP_CASTEiJ_G0017600.1 mouse_genomes_project 11 51370930 51373590 + Vdac1 protein_coding processed_transcript MGP_CASTEiJ_T0028421.1 MGP_CASTEiJ_G0017600.1 mouse_genomes_project 11 51371093 51386254 + MGP_CASTEiJ_P0028421 Vdac1 protein_coding protein_coding MGP_CASTEiJ_T0028422.1 MGP_CASTEiJ_G0017600.1 mouse_genomes_project 11 51384954 51386522 + Vdac1 protein_coding retained_intron MGP_CASTEiJ_T0031812.1 MGP_CASTEiJ_G0018425.1 mouse_genomes_project 11 102386878 102397250 - MGP_CASTEiJ_P0031812 protein_coding protein_coding MGP_CASTEiJ_T0028839.1 MGP_CASTEiJ_G0017722.1 mouse_genomes_project 11 59630967 59730445 + Rai1 protein_coding processed_transcript MGP_CASTEiJ_T0028840.1 MGP_CASTEiJ_G0017722.1 mouse_genomes_project 11 59631131 59715300 + MGP_CASTEiJ_P0028840 Rai1 protein_coding protein_coding MGP_CASTEiJ_T0028841.1 MGP_CASTEiJ_G0017722.1 mouse_genomes_project 11 59631333 59729366 + MGP_CASTEiJ_P0028841 Rai1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028842.1 MGP_CASTEiJ_G0017722.1 mouse_genomes_project 11 59668971 59721907 + MGP_CASTEiJ_P0028842 Rai1 protein_coding protein_coding MGP_CASTEiJ_T0028843.1 MGP_CASTEiJ_G0017722.1 mouse_genomes_project 11 59713365 59730328 + MGP_CASTEiJ_P0028843 Rai1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030738.1 MGP_CASTEiJ_G0018150.1 mouse_genomes_project 11 84341621 84376834 + MGP_CASTEiJ_P0030738 Slfn4 protein_coding protein_coding MGP_CASTEiJ_T0003122.1 MGP_CASTEiJ_G0002903.1 mouse_genomes_project 11 79164264 79175377 + Slc13a2os antisense antisense MGP_CASTEiJ_T0032587.1 MGP_CASTEiJ_G0018597.1 mouse_genomes_project 11 109179964 109251791 + MGP_CASTEiJ_P0032587 Map3k3 protein_coding protein_coding MGP_CASTEiJ_T0032588.1 MGP_CASTEiJ_G0018597.1 mouse_genomes_project 11 109180187 109246710 + MGP_CASTEiJ_P0032588 Map3k3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032589.1 MGP_CASTEiJ_G0018597.1 mouse_genomes_project 11 109247568 109248735 + Map3k3 protein_coding processed_transcript MGP_CASTEiJ_T0032590.1 MGP_CASTEiJ_G0018597.1 mouse_genomes_project 11 109248420 109250488 + Map3k3 protein_coding processed_transcript MGP_CASTEiJ_T0003257.1 MGP_CASTEiJ_G0003008.1 mouse_genomes_project 11 125009582 125012241 + Notumos antisense antisense MGP_CASTEiJ_T0033172.1 MGP_CASTEiJ_G0018716.1 mouse_genomes_project 11 120023610 120039924 - MGP_CASTEiJ_P0033172 Unc13d protein_coding protein_coding MGP_CASTEiJ_T0033173.1 MGP_CASTEiJ_G0018716.1 mouse_genomes_project 11 120024066 120039587 - MGP_CASTEiJ_P0033173 Unc13d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033174.1 MGP_CASTEiJ_G0018716.1 mouse_genomes_project 11 120024150 120039553 - MGP_CASTEiJ_P0033174 Unc13d protein_coding protein_coding MGP_CASTEiJ_T0033175.1 MGP_CASTEiJ_G0018716.1 mouse_genomes_project 11 120024152 120039869 - MGP_CASTEiJ_P0033175 Unc13d protein_coding unknown_likely_coding MGP_CASTEiJ_T0033176.1 MGP_CASTEiJ_G0018716.1 mouse_genomes_project 11 120029548 120031119 - Unc13d protein_coding retained_intron MGP_CASTEiJ_T0033177.1 MGP_CASTEiJ_G0018716.1 mouse_genomes_project 11 120038071 120039015 - MGP_CASTEiJ_P0033177 Unc13d protein_coding protein_coding MGP_CASTEiJ_T0033178.1 MGP_CASTEiJ_G0018716.1 mouse_genomes_project 11 120038434 120039904 - MGP_CASTEiJ_P0033178 Unc13d protein_coding protein_coding MGP_CASTEiJ_T0033575.1 MGP_CASTEiJ_G0018790.1 mouse_genomes_project 11 124219026 124285878 + MGP_CASTEiJ_P0033575 Baiap2 protein_coding protein_coding MGP_CASTEiJ_T0033576.1 MGP_CASTEiJ_G0018790.1 mouse_genomes_project 11 124219026 124285878 + MGP_CASTEiJ_P0033576 Baiap2 protein_coding protein_coding MGP_CASTEiJ_T0033577.1 MGP_CASTEiJ_G0018790.1 mouse_genomes_project 11 124219026 124281747 + MGP_CASTEiJ_P0033577 Baiap2 protein_coding protein_coding MGP_CASTEiJ_T0033578.1 MGP_CASTEiJ_G0018790.1 mouse_genomes_project 11 124219026 124281747 + MGP_CASTEiJ_P0033578 Baiap2 protein_coding protein_coding MGP_CASTEiJ_T0033579.1 MGP_CASTEiJ_G0018790.1 mouse_genomes_project 11 124219026 124281747 + MGP_CASTEiJ_P0033579 Baiap2 protein_coding protein_coding MGP_CASTEiJ_T0033580.1 MGP_CASTEiJ_G0018790.1 mouse_genomes_project 11 124219381 124236895 + Baiap2 protein_coding processed_transcript MGP_CASTEiJ_T0033581.1 MGP_CASTEiJ_G0018790.1 mouse_genomes_project 11 124219737 124260576 + Baiap2 protein_coding processed_transcript MGP_CASTEiJ_T0033582.1 MGP_CASTEiJ_G0018790.1 mouse_genomes_project 11 124236382 124236750 + Baiap2 protein_coding processed_transcript MGP_CASTEiJ_T0033583.1 MGP_CASTEiJ_G0018790.1 mouse_genomes_project 11 124276795 124281326 + Baiap2 protein_coding processed_transcript MGP_CASTEiJ_T0032493.1 MGP_CASTEiJ_G0018579.1 mouse_genomes_project 11 107232468 107342480 + MGP_CASTEiJ_P0032493 protein_coding protein_coding MGP_CASTEiJ_T0032494.1 MGP_CASTEiJ_G0018579.1 mouse_genomes_project 11 107232528 107338839 + MGP_CASTEiJ_P0032494 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032495.1 MGP_CASTEiJ_G0018579.1 mouse_genomes_project 11 107232557 107305219 + protein_coding retained_intron MGP_CASTEiJ_T0032496.1 MGP_CASTEiJ_G0018579.1 mouse_genomes_project 11 107232562 107316503 + MGP_CASTEiJ_P0032496 protein_coding protein_coding MGP_CASTEiJ_T0032497.1 MGP_CASTEiJ_G0018579.1 mouse_genomes_project 11 107232593 107338825 + MGP_CASTEiJ_P0032497 protein_coding protein_coding MGP_CASTEiJ_T0032498.1 MGP_CASTEiJ_G0018579.1 mouse_genomes_project 11 107232651 107316587 + MGP_CASTEiJ_P0032498 protein_coding protein_coding MGP_CASTEiJ_T0032499.1 MGP_CASTEiJ_G0018579.1 mouse_genomes_project 11 107232657 107316563 + protein_coding processed_transcript MGP_CASTEiJ_T0032500.1 MGP_CASTEiJ_G0018579.1 mouse_genomes_project 11 107232659 107304835 + MGP_CASTEiJ_P0032500 protein_coding protein_coding MGP_CASTEiJ_T0032501.1 MGP_CASTEiJ_G0018579.1 mouse_genomes_project 11 107232662 107338611 + MGP_CASTEiJ_P0032501 protein_coding protein_coding MGP_CASTEiJ_T0032502.1 MGP_CASTEiJ_G0018579.1 mouse_genomes_project 11 107286719 107338579 + MGP_CASTEiJ_P0032502 protein_coding protein_coding MGP_CASTEiJ_T0032503.1 MGP_CASTEiJ_G0018579.1 mouse_genomes_project 11 107286719 107338579 + MGP_CASTEiJ_P0032503 protein_coding protein_coding MGP_CASTEiJ_T0032504.1 MGP_CASTEiJ_G0018579.1 mouse_genomes_project 11 107328927 107338633 + protein_coding processed_transcript MGP_CASTEiJ_T0032505.1 MGP_CASTEiJ_G0018579.1 mouse_genomes_project 11 107332705 107338602 + protein_coding processed_transcript MGP_CASTEiJ_T0029392.1 MGP_CASTEiJ_G0017835.1 mouse_genomes_project 11 69387242 69389055 + MGP_CASTEiJ_P0029392 Trappc1 protein_coding protein_coding MGP_CASTEiJ_T0029393.1 MGP_CASTEiJ_G0017835.1 mouse_genomes_project 11 69387325 69389055 + MGP_CASTEiJ_P0029393 Trappc1 protein_coding protein_coding MGP_CASTEiJ_T0029394.1 MGP_CASTEiJ_G0017835.1 mouse_genomes_project 11 69387337 69389055 + MGP_CASTEiJ_P0029394 Trappc1 protein_coding protein_coding MGP_CASTEiJ_T0029395.1 MGP_CASTEiJ_G0017835.1 mouse_genomes_project 11 69387419 69389055 + MGP_CASTEiJ_P0029395 Trappc1 protein_coding protein_coding MGP_CASTEiJ_T0029396.1 MGP_CASTEiJ_G0017835.1 mouse_genomes_project 11 69387700 69388494 + Trappc1 protein_coding processed_transcript MGP_CASTEiJ_T0003057.1 MGP_CASTEiJ_G0002849.1 mouse_genomes_project 11 53388509 53395447 + Gm12223 antisense antisense MGP_CASTEiJ_T0030124.1 MGP_CASTEiJ_G0018012.1 mouse_genomes_project 11 75704787 75707694 - MGP_CASTEiJ_P0030124 Ovca2 protein_coding protein_coding MGP_CASTEiJ_T0030127.1 MGP_CASTEiJ_G0018012.1 mouse_genomes_project 11 75706659 75707646 - Ovca2 protein_coding processed_transcript MGP_CASTEiJ_T0009509.1 MGP_CASTEiJ_G0007697.1 mouse_genomes_project 11 107443491 107443636 - miRNA miRNA MGP_CASTEiJ_T0003150.1 MGP_CASTEiJ_G0002925.1 mouse_genomes_project 11 90695865 90700237 + Dgkeos antisense antisense MGP_CASTEiJ_T0003151.1 MGP_CASTEiJ_G0002925.1 mouse_genomes_project 11 90697240 90700237 + Dgkeos antisense antisense MGP_CASTEiJ_T0003152.1 MGP_CASTEiJ_G0002925.1 mouse_genomes_project 11 90697412 90699025 + Dgkeos antisense antisense MGP_CASTEiJ_T0003153.1 MGP_CASTEiJ_G0002925.1 mouse_genomes_project 11 90697416 90699025 + Dgkeos antisense antisense MGP_CASTEiJ_T0028159.1 MGP_CASTEiJ_G0017538.1 mouse_genomes_project 11 47945524 47962269 + MGP_CASTEiJ_P0028159 Zfp62 protein_coding protein_coding MGP_CASTEiJ_T0028160.1 MGP_CASTEiJ_G0017538.1 mouse_genomes_project 11 47945528 47958993 + MGP_CASTEiJ_P0028160 Zfp62 protein_coding protein_coding MGP_CASTEiJ_T0028161.1 MGP_CASTEiJ_G0017538.1 mouse_genomes_project 11 47945717 47958623 + Zfp62 protein_coding retained_intron MGP_CASTEiJ_T0028162.1 MGP_CASTEiJ_G0017538.1 mouse_genomes_project 11 47945717 47957349 + Zfp62 protein_coding processed_transcript MGP_CASTEiJ_T0028163.1 MGP_CASTEiJ_G0017538.1 mouse_genomes_project 11 47945717 47958824 + MGP_CASTEiJ_P0028163 Zfp62 protein_coding protein_coding MGP_CASTEiJ_T0028164.1 MGP_CASTEiJ_G0017538.1 mouse_genomes_project 11 47945730 47962532 + MGP_CASTEiJ_P0028164 Zfp62 protein_coding protein_coding MGP_CASTEiJ_T0028165.1 MGP_CASTEiJ_G0017538.1 mouse_genomes_project 11 47945738 47959383 + MGP_CASTEiJ_P0028165 Zfp62 protein_coding protein_coding MGP_CASTEiJ_T0028166.1 MGP_CASTEiJ_G0017538.1 mouse_genomes_project 11 47945966 47958890 + MGP_CASTEiJ_P0028166 Zfp62 protein_coding protein_coding MGP_CASTEiJ_T0028167.1 MGP_CASTEiJ_G0017538.1 mouse_genomes_project 11 47946517 47961476 + MGP_CASTEiJ_P0028167 Zfp62 protein_coding protein_coding MGP_CASTEiJ_T0028168.1 MGP_CASTEiJ_G0017538.1 mouse_genomes_project 11 47956401 47962525 + MGP_CASTEiJ_P0028168 Zfp62 protein_coding protein_coding MGP_CASTEiJ_T0028169.1 MGP_CASTEiJ_G0017538.1 mouse_genomes_project 11 47957304 47959036 + MGP_CASTEiJ_P0028169 Zfp62 protein_coding protein_coding MGP_CASTEiJ_T0028170.1 MGP_CASTEiJ_G0017538.1 mouse_genomes_project 11 47958261 47962525 + MGP_CASTEiJ_P0028170 Zfp62 protein_coding protein_coding MGP_CASTEiJ_T0028228.1 MGP_CASTEiJ_G0017555.1 mouse_genomes_project 11 48928590 48936106 + 3010026O09Rik protein_coding processed_transcript MGP_CASTEiJ_T0028229.1 MGP_CASTEiJ_G0017555.1 mouse_genomes_project 11 48928992 48958359 + MGP_CASTEiJ_P0028229 3010026O09Rik protein_coding protein_coding MGP_CASTEiJ_T0028230.1 MGP_CASTEiJ_G0017555.1 mouse_genomes_project 11 48929050 48955452 + MGP_CASTEiJ_P0028230 3010026O09Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0100468.1 MGP_CASTEiJ_G0037381.1 mouse_genomes_project 11 94713540 94713682 + Gm25113 snoRNA snoRNA MGP_CASTEiJ_T0006130.1 MGP_CASTEiJ_G0005130.1 mouse_genomes_project 11 84397323 84400343 + AI662270 lincRNA lincRNA MGP_CASTEiJ_T0006131.1 MGP_CASTEiJ_G0005130.1 mouse_genomes_project 11 84397323 84399606 + AI662270 lincRNA lincRNA MGP_CASTEiJ_T0006132.1 MGP_CASTEiJ_G0005130.1 mouse_genomes_project 11 84397896 84398330 + AI662270 lincRNA lincRNA MGP_CASTEiJ_T0003193.1 MGP_CASTEiJ_G0002957.1 mouse_genomes_project 11 104764187 104764904 + Gm20659 antisense antisense MGP_CASTEiJ_T0031188.1 MGP_CASTEiJ_G0018259.1 mouse_genomes_project 11 95867653 96003538 + MGP_CASTEiJ_P0031188 Spag9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031189.1 MGP_CASTEiJ_G0018259.1 mouse_genomes_project 11 95867653 96003538 + MGP_CASTEiJ_P0031189 Spag9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031190.1 MGP_CASTEiJ_G0018259.1 mouse_genomes_project 11 95867653 96003538 + MGP_CASTEiJ_P0031190 Spag9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031191.1 MGP_CASTEiJ_G0018259.1 mouse_genomes_project 11 95867678 95917520 + Spag9 protein_coding processed_transcript MGP_CASTEiJ_T0031192.1 MGP_CASTEiJ_G0018259.1 mouse_genomes_project 11 95867690 95924542 + Spag9 protein_coding processed_transcript MGP_CASTEiJ_T0031193.1 MGP_CASTEiJ_G0018259.1 mouse_genomes_project 11 95867690 96004037 + MGP_CASTEiJ_P0031193 Spag9 protein_coding protein_coding MGP_CASTEiJ_T0031194.1 MGP_CASTEiJ_G0018259.1 mouse_genomes_project 11 95917461 95974427 + MGP_CASTEiJ_P0031194 Spag9 protein_coding protein_coding MGP_CASTEiJ_T0031195.1 MGP_CASTEiJ_G0018259.1 mouse_genomes_project 11 95918009 95983492 + MGP_CASTEiJ_P0031195 Spag9 protein_coding protein_coding MGP_CASTEiJ_T0031196.1 MGP_CASTEiJ_G0018259.1 mouse_genomes_project 11 95918081 95934283 + Spag9 protein_coding processed_transcript MGP_CASTEiJ_T0031197.1 MGP_CASTEiJ_G0018259.1 mouse_genomes_project 11 95918096 96004032 + MGP_CASTEiJ_P0031197 Spag9 protein_coding protein_coding MGP_CASTEiJ_T0031198.1 MGP_CASTEiJ_G0018259.1 mouse_genomes_project 11 95918096 96004032 + MGP_CASTEiJ_P0031198 Spag9 protein_coding protein_coding MGP_CASTEiJ_T0031199.1 MGP_CASTEiJ_G0018259.1 mouse_genomes_project 11 95918159 96004037 + MGP_CASTEiJ_P0031199 Spag9 protein_coding protein_coding MGP_CASTEiJ_T0031200.1 MGP_CASTEiJ_G0018259.1 mouse_genomes_project 11 95918256 96004035 + MGP_CASTEiJ_P0031200 Spag9 protein_coding protein_coding MGP_CASTEiJ_T0031201.1 MGP_CASTEiJ_G0018259.1 mouse_genomes_project 11 95945781 96004037 + MGP_CASTEiJ_P0031201 Spag9 protein_coding protein_coding MGP_CASTEiJ_T0031202.1 MGP_CASTEiJ_G0018259.1 mouse_genomes_project 11 95945877 95970186 + Spag9 protein_coding processed_transcript MGP_CASTEiJ_T0028684.1 MGP_CASTEiJ_G0017668.1 mouse_genomes_project 11 57738356 57753661 + MGP_CASTEiJ_P0028684 Lypd8 protein_coding protein_coding MGP_CASTEiJ_T0028685.1 MGP_CASTEiJ_G0017668.1 mouse_genomes_project 11 57738356 57753470 + MGP_CASTEiJ_P0028685 Lypd8 protein_coding protein_coding MGP_CASTEiJ_T0006142.1 MGP_CASTEiJ_G0005138.1 mouse_genomes_project 11 89594709 89604856 + Gm15892 lincRNA lincRNA MGP_CASTEiJ_T0006143.1 MGP_CASTEiJ_G0005138.1 mouse_genomes_project 11 89603737 89604408 + Gm15892 lincRNA lincRNA MGP_CASTEiJ_T0006144.1 MGP_CASTEiJ_G0005138.1 mouse_genomes_project 11 89603797 89604832 + Gm15892 lincRNA lincRNA MGP_CASTEiJ_T0031797.1 MGP_CASTEiJ_G0018410.1 mouse_genomes_project 11 102128662 102129269 - MGP_CASTEiJ_P0031797 Krtap3-1 protein_coding protein_coding MGP_CASTEiJ_T0030991.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89048899 89065184 + MGP_CASTEiJ_P0030991 Sept4 protein_coding protein_coding MGP_CASTEiJ_T0030992.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89058404 89072466 + MGP_CASTEiJ_P0030992 Sept4 protein_coding protein_coding MGP_CASTEiJ_T0030993.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89058415 89071113 + Sept4 protein_coding retained_intron MGP_CASTEiJ_T0030994.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89058427 89072464 + MGP_CASTEiJ_P0030994 Sept4 protein_coding protein_coding MGP_CASTEiJ_T0030995.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89058450 89072466 + Sept4 protein_coding retained_intron MGP_CASTEiJ_T0030996.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89058459 89065974 + Sept4 protein_coding retained_intron MGP_CASTEiJ_T0030997.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89058473 89072466 + Sept4 protein_coding retained_intron MGP_CASTEiJ_T0030998.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89058487 89065802 + Sept4 protein_coding retained_intron MGP_CASTEiJ_T0030999.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89058931 89071201 + MGP_CASTEiJ_P0030999 Sept4 protein_coding protein_coding MGP_CASTEiJ_T0031000.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89061026 89072466 + MGP_CASTEiJ_P0031000 Sept4 protein_coding protein_coding MGP_CASTEiJ_T0031001.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89061046 89072466 + MGP_CASTEiJ_P0031001 Sept4 protein_coding protein_coding MGP_CASTEiJ_T0031002.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89061046 89072302 + MGP_CASTEiJ_P0031002 Sept4 protein_coding protein_coding MGP_CASTEiJ_T0031003.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89061054 89065974 + Sept4 protein_coding retained_intron MGP_CASTEiJ_T0031004.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89061059 89072466 + Sept4 protein_coding retained_intron MGP_CASTEiJ_T0031005.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89062192 89070968 + MGP_CASTEiJ_P0031005 Sept4 protein_coding protein_coding MGP_CASTEiJ_T0031006.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89065167 89071791 + Sept4 protein_coding retained_intron MGP_CASTEiJ_T0031007.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89070794 89071921 + Sept4 protein_coding retained_intron MGP_CASTEiJ_T0031008.1 MGP_CASTEiJ_G0018215.1 mouse_genomes_project 11 89071403 89072466 + Sept4 protein_coding processed_transcript MGP_CASTEiJ_T0027197.1 MGP_CASTEiJ_G0017309.1 mouse_genomes_project 11 1900971 1961612 + MGP_CASTEiJ_P0027197 Ap1b1 protein_coding protein_coding MGP_CASTEiJ_T0027198.1 MGP_CASTEiJ_G0017309.1 mouse_genomes_project 11 1900971 1961550 + MGP_CASTEiJ_P0027198 Ap1b1 protein_coding protein_coding MGP_CASTEiJ_T0027199.1 MGP_CASTEiJ_G0017309.1 mouse_genomes_project 11 1901059 1931126 + Ap1b1 protein_coding processed_transcript MGP_CASTEiJ_T0027200.1 MGP_CASTEiJ_G0017309.1 mouse_genomes_project 11 1901081 1932239 + Ap1b1 protein_coding processed_transcript MGP_CASTEiJ_T0027201.1 MGP_CASTEiJ_G0017309.1 mouse_genomes_project 11 1925519 1931126 + Ap1b1 protein_coding processed_transcript MGP_CASTEiJ_T0027202.1 MGP_CASTEiJ_G0017309.1 mouse_genomes_project 11 1925575 1961550 + MGP_CASTEiJ_P0027202 Ap1b1 protein_coding protein_coding MGP_CASTEiJ_T0027203.1 MGP_CASTEiJ_G0017309.1 mouse_genomes_project 11 1949819 1951617 + Ap1b1 protein_coding processed_transcript MGP_CASTEiJ_T0027204.1 MGP_CASTEiJ_G0017309.1 mouse_genomes_project 11 1956160 1959206 + Ap1b1 protein_coding processed_transcript MGP_CASTEiJ_T0027205.1 MGP_CASTEiJ_G0017309.1 mouse_genomes_project 11 1957554 1959225 + Ap1b1 protein_coding processed_transcript MGP_CASTEiJ_T0029719.1 MGP_CASTEiJ_G0017907.1 mouse_genomes_project 11 70684644 70685745 - MGP_CASTEiJ_P0029719 Vmo1 protein_coding protein_coding MGP_CASTEiJ_T0030887.1 MGP_CASTEiJ_G0018189.1 mouse_genomes_project 11 86520018 86570744 - MGP_CASTEiJ_P0030887 Appbp2 protein_coding protein_coding MGP_CASTEiJ_T0031778.1 MGP_CASTEiJ_G0018395.1 mouse_genomes_project 11 101763295 101775406 - MGP_CASTEiJ_P0031778 Krt222 protein_coding protein_coding MGP_CASTEiJ_T0031779.1 MGP_CASTEiJ_G0018395.1 mouse_genomes_project 11 101765500 101769297 - Krt222 protein_coding processed_transcript MGP_CASTEiJ_T0029142.1 MGP_CASTEiJ_G0017776.1 mouse_genomes_project 11 62810182 62849656 + MGP_CASTEiJ_P0029142 Tekt3 protein_coding protein_coding MGP_CASTEiJ_T0029143.1 MGP_CASTEiJ_G0017776.1 mouse_genomes_project 11 62820591 62849640 + MGP_CASTEiJ_P0029143 Tekt3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006170.1 MGP_CASTEiJ_G0005156.1 mouse_genomes_project 11 102733909 102741369 - Gm12347 lincRNA lincRNA MGP_CASTEiJ_T0031325.1 MGP_CASTEiJ_G0018288.1 mouse_genomes_project 11 97335500 97343189 + MGP_CASTEiJ_P0031325 Tac4 protein_coding protein_coding MGP_CASTEiJ_T0029679.1 MGP_CASTEiJ_G0017897.1 mouse_genomes_project 11 70384444 70386104 - MGP_CASTEiJ_P0029679 Gm21988 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029680.1 MGP_CASTEiJ_G0017897.1 mouse_genomes_project 11 70384444 70386166 - MGP_CASTEiJ_P0029680 Gm21988 protein_coding protein_coding MGP_CASTEiJ_T0029681.1 MGP_CASTEiJ_G0017897.1 mouse_genomes_project 11 70384447 70385379 - MGP_CASTEiJ_P0029681 Gm21988 protein_coding protein_coding MGP_CASTEiJ_T0006019.1 MGP_CASTEiJ_G0005039.1 mouse_genomes_project 11 18262839 18263277 - Gm12037 lincRNA lincRNA MGP_CASTEiJ_T0031990.1 MGP_CASTEiJ_G0018483.1 mouse_genomes_project 11 103793255 103799169 + MGP_CASTEiJ_P0031990 Coasy protein_coding protein_coding MGP_CASTEiJ_T0031991.1 MGP_CASTEiJ_G0018483.1 mouse_genomes_project 11 103793308 103798170 + Coasy protein_coding processed_transcript MGP_CASTEiJ_T0031992.1 MGP_CASTEiJ_G0018483.1 mouse_genomes_project 11 103793315 103799169 + MGP_CASTEiJ_P0031992 Coasy protein_coding protein_coding MGP_CASTEiJ_T0031993.1 MGP_CASTEiJ_G0018483.1 mouse_genomes_project 11 103794585 103795882 + Coasy protein_coding processed_transcript MGP_CASTEiJ_T0031789.1 MGP_CASTEiJ_G0018404.1 mouse_genomes_project 11 102030875 102045955 - MGP_CASTEiJ_P0031789 Krt23 protein_coding protein_coding MGP_CASTEiJ_T0029861.1 MGP_CASTEiJ_G0017931.1 mouse_genomes_project 11 71257965 71263527 + MGP_CASTEiJ_P0029861 Mis12 protein_coding protein_coding MGP_CASTEiJ_T0029862.1 MGP_CASTEiJ_G0017931.1 mouse_genomes_project 11 71257965 71264424 + MGP_CASTEiJ_P0029862 Mis12 protein_coding protein_coding MGP_CASTEiJ_T0029863.1 MGP_CASTEiJ_G0017931.1 mouse_genomes_project 11 71257965 71265745 + MGP_CASTEiJ_P0029863 Mis12 protein_coding protein_coding MGP_CASTEiJ_T0029864.1 MGP_CASTEiJ_G0017931.1 mouse_genomes_project 11 71258213 71263516 + MGP_CASTEiJ_P0029864 Mis12 protein_coding protein_coding MGP_CASTEiJ_T0029865.1 MGP_CASTEiJ_G0017931.1 mouse_genomes_project 11 71258216 71263507 + MGP_CASTEiJ_P0029865 Mis12 protein_coding protein_coding MGP_CASTEiJ_T0029866.1 MGP_CASTEiJ_G0017931.1 mouse_genomes_project 11 71258245 71263544 + MGP_CASTEiJ_P0029866 Mis12 protein_coding protein_coding MGP_CASTEiJ_T0003052.1 MGP_CASTEiJ_G0002844.1 mouse_genomes_project 11 51202109 51204974 + Gm12207 antisense antisense MGP_CASTEiJ_T0099257.1 MGP_CASTEiJ_G0036170.1 mouse_genomes_project 11 84702719 84702826 + Gm23247 snRNA snRNA MGP_CASTEiJ_T0028135.1 MGP_CASTEiJ_G0017526.1 mouse_genomes_project 11 47621385 47637546 - MGP_CASTEiJ_P0028135 protein_coding protein_coding MGP_CASTEiJ_T0006018.1 MGP_CASTEiJ_G0005038.1 mouse_genomes_project 11 17523903 17524651 - Gm12031 lincRNA lincRNA MGP_CASTEiJ_T0016532.1 MGP_CASTEiJ_G0014529.1 mouse_genomes_project 11 110759790 110785894 - A830035A12Rik processed_transcript processed_transcript MGP_CASTEiJ_T0098466.1 MGP_CASTEiJ_G0035397.1 mouse_genomes_project 11 87802995 87803115 + Gm23667 rRNA rRNA MGP_CASTEiJ_T0028740.1 MGP_CASTEiJ_G0017698.1 mouse_genomes_project 11 58440866 58594010 - MGP_CASTEiJ_P0028740 Obscn protein_coding protein_coding MGP_CASTEiJ_T0028741.1 MGP_CASTEiJ_G0017698.1 mouse_genomes_project 11 58440869 58481243 - MGP_CASTEiJ_P0028741 Obscn protein_coding protein_coding MGP_CASTEiJ_T0028742.1 MGP_CASTEiJ_G0017698.1 mouse_genomes_project 11 58440942 58457150 - MGP_CASTEiJ_P0028742 Obscn protein_coding unknown_likely_coding MGP_CASTEiJ_T0028743.1 MGP_CASTEiJ_G0017698.1 mouse_genomes_project 11 58440942 58457050 - MGP_CASTEiJ_P0028743 Obscn protein_coding unknown_likely_coding MGP_CASTEiJ_T0028744.1 MGP_CASTEiJ_G0017698.1 mouse_genomes_project 11 58458326 58596842 - MGP_CASTEiJ_P0028744 Obscn protein_coding unknown_likely_coding MGP_CASTEiJ_T0028745.1 MGP_CASTEiJ_G0017698.1 mouse_genomes_project 11 58458326 58596866 - MGP_CASTEiJ_P0028745 Obscn protein_coding unknown_likely_coding MGP_CASTEiJ_T0028746.1 MGP_CASTEiJ_G0017698.1 mouse_genomes_project 11 58458331 58481216 - MGP_CASTEiJ_P0028746 Obscn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0028747.1 MGP_CASTEiJ_G0017698.1 mouse_genomes_project 11 58458331 58594037 - MGP_CASTEiJ_P0028747 Obscn protein_coding protein_coding MGP_CASTEiJ_T0028748.1 MGP_CASTEiJ_G0017698.1 mouse_genomes_project 11 58458331 58594186 - MGP_CASTEiJ_P0028748 Obscn protein_coding protein_coding MGP_CASTEiJ_T0028749.1 MGP_CASTEiJ_G0017698.1 mouse_genomes_project 11 58458332 58475688 - MGP_CASTEiJ_P0028749 Obscn protein_coding protein_coding MGP_CASTEiJ_T0028750.1 MGP_CASTEiJ_G0017698.1 mouse_genomes_project 11 58524088 58530675 - MGP_CASTEiJ_P0028750 Obscn protein_coding protein_coding MGP_CASTEiJ_T0098463.1 MGP_CASTEiJ_G0035394.1 mouse_genomes_project 11 74783624 74783743 + n-R5s71 rRNA rRNA MGP_CASTEiJ_T0033214.1 MGP_CASTEiJ_G0018722.1 mouse_genomes_project 11 120146722 120158213 - Acox1 protein_coding processed_transcript MGP_CASTEiJ_T0033215.1 MGP_CASTEiJ_G0018722.1 mouse_genomes_project 11 120146722 120177935 - MGP_CASTEiJ_P0033215 Acox1 protein_coding protein_coding MGP_CASTEiJ_T0033216.1 MGP_CASTEiJ_G0018722.1 mouse_genomes_project 11 120146722 120177691 - MGP_CASTEiJ_P0033216 Acox1 protein_coding protein_coding MGP_CASTEiJ_T0033217.1 MGP_CASTEiJ_G0018722.1 mouse_genomes_project 11 120146722 120165564 - MGP_CASTEiJ_P0033217 Acox1 protein_coding protein_coding MGP_CASTEiJ_T0033218.1 MGP_CASTEiJ_G0018722.1 mouse_genomes_project 11 120150195 120157362 - Acox1 protein_coding processed_transcript MGP_CASTEiJ_T0033219.1 MGP_CASTEiJ_G0018722.1 mouse_genomes_project 11 120155878 120158363 - Acox1 protein_coding processed_transcript MGP_CASTEiJ_T0033220.1 MGP_CASTEiJ_G0018722.1 mouse_genomes_project 11 120165008 120177619 - Acox1 protein_coding processed_transcript MGP_CASTEiJ_T0028112.1 MGP_CASTEiJ_G0017521.1 mouse_genomes_project 11 47518413 47525061 + Rack1 protein_coding retained_intron MGP_CASTEiJ_T0028113.1 MGP_CASTEiJ_G0017521.1 mouse_genomes_project 11 47518438 47526171 + Rack1 protein_coding processed_transcript MGP_CASTEiJ_T0028114.1 MGP_CASTEiJ_G0017521.1 mouse_genomes_project 11 47518441 47526518 + MGP_CASTEiJ_P0028114 Rack1 protein_coding protein_coding MGP_CASTEiJ_T0028115.1 MGP_CASTEiJ_G0017521.1 mouse_genomes_project 11 47518455 47520743 + Rack1 protein_coding retained_intron MGP_CASTEiJ_T0028116.1 MGP_CASTEiJ_G0017521.1 mouse_genomes_project 11 47521227 47526156 + Rack1 protein_coding processed_transcript MGP_CASTEiJ_T0028117.1 MGP_CASTEiJ_G0017521.1 mouse_genomes_project 11 47525530 47526176 + Rack1 protein_coding processed_transcript MGP_CASTEiJ_T0028363.1 MGP_CASTEiJ_G0017585.1 mouse_genomes_project 11 50516309 50521577 + MGP_CASTEiJ_P0028363 Nhp2 protein_coding protein_coding MGP_CASTEiJ_T0028364.1 MGP_CASTEiJ_G0017585.1 mouse_genomes_project 11 50516345 50521293 + Nhp2 protein_coding retained_intron MGP_CASTEiJ_T0012431.1 MGP_CASTEiJ_G0010594.1 mouse_genomes_project 11 125792760 125793095 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012357.1 MGP_CASTEiJ_G0010520.1 mouse_genomes_project 11 94566117 94567060 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009476.1 MGP_CASTEiJ_G0007664.1 mouse_genomes_project 11 80591100 80591212 + Mir365-2 miRNA miRNA MGP_CASTEiJ_T0029453.1 MGP_CASTEiJ_G0017852.1 mouse_genomes_project 11 69753474 69759415 - MGP_CASTEiJ_P0029453 Mpdu1 protein_coding protein_coding MGP_CASTEiJ_T0029454.1 MGP_CASTEiJ_G0017852.1 mouse_genomes_project 11 69753738 69759337 - MGP_CASTEiJ_P0029454 Mpdu1 protein_coding protein_coding MGP_CASTEiJ_T0029455.1 MGP_CASTEiJ_G0017852.1 mouse_genomes_project 11 69753804 69759360 - MGP_CASTEiJ_P0029455 Mpdu1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029456.1 MGP_CASTEiJ_G0017852.1 mouse_genomes_project 11 69753906 69755056 - Mpdu1 protein_coding retained_intron MGP_CASTEiJ_T0029457.1 MGP_CASTEiJ_G0017852.1 mouse_genomes_project 11 69753931 69759360 - MGP_CASTEiJ_P0029457 Mpdu1 protein_coding protein_coding MGP_CASTEiJ_T0029458.1 MGP_CASTEiJ_G0017852.1 mouse_genomes_project 11 69753939 69759291 - MGP_CASTEiJ_P0029458 Mpdu1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029459.1 MGP_CASTEiJ_G0017852.1 mouse_genomes_project 11 69753990 69755029 - Mpdu1 protein_coding retained_intron MGP_CASTEiJ_T0029460.1 MGP_CASTEiJ_G0017852.1 mouse_genomes_project 11 69754508 69759277 - Mpdu1 protein_coding retained_intron MGP_CASTEiJ_T0029461.1 MGP_CASTEiJ_G0017852.1 mouse_genomes_project 11 69755122 69759333 - Mpdu1 protein_coding retained_intron MGP_CASTEiJ_T0029462.1 MGP_CASTEiJ_G0017852.1 mouse_genomes_project 11 69755251 69756181 - Mpdu1 protein_coding retained_intron MGP_CASTEiJ_T0030300.1 MGP_CASTEiJ_G0018051.1 mouse_genomes_project 11 77730740 77836145 - MGP_CASTEiJ_P0030300 Efcab5 protein_coding protein_coding MGP_CASTEiJ_T0030301.1 MGP_CASTEiJ_G0018051.1 mouse_genomes_project 11 77730769 77743980 - Efcab5 protein_coding retained_intron MGP_CASTEiJ_T0030302.1 MGP_CASTEiJ_G0018051.1 mouse_genomes_project 11 77731013 77795312 - MGP_CASTEiJ_P0030302 Efcab5 protein_coding protein_coding MGP_CASTEiJ_T0030303.1 MGP_CASTEiJ_G0018051.1 mouse_genomes_project 11 77731126 77867128 - MGP_CASTEiJ_P0030303 Efcab5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030304.1 MGP_CASTEiJ_G0018051.1 mouse_genomes_project 11 77743639 77780093 - Efcab5 protein_coding retained_intron MGP_CASTEiJ_T0030305.1 MGP_CASTEiJ_G0018051.1 mouse_genomes_project 11 77795204 77816189 - Efcab5 protein_coding processed_transcript MGP_CASTEiJ_T0003101.1 MGP_CASTEiJ_G0002886.1 mouse_genomes_project 11 67148352 67178169 - Gm12300 antisense antisense MGP_CASTEiJ_T0003102.1 MGP_CASTEiJ_G0002886.1 mouse_genomes_project 11 67164013 67169339 - Gm12300 antisense antisense MGP_CASTEiJ_T0003103.1 MGP_CASTEiJ_G0002886.1 mouse_genomes_project 11 67164331 67177877 - Gm12300 antisense antisense MGP_CASTEiJ_T0009439.1 MGP_CASTEiJ_G0007627.1 mouse_genomes_project 11 59733509 59733575 - Mir6922 miRNA miRNA MGP_CASTEiJ_T0012347.1 MGP_CASTEiJ_G0010510.1 mouse_genomes_project 11 88527624 88528096 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012408.1 MGP_CASTEiJ_G0010571.1 mouse_genomes_project 11 115116423 115116913 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028687.1 MGP_CASTEiJ_G0017670.1 mouse_genomes_project 11 57802599 57811618 + MGP_CASTEiJ_P0028687 Gm12253 protein_coding protein_coding MGP_CASTEiJ_T0003173.1 MGP_CASTEiJ_G0002942.1 mouse_genomes_project 11 100013425 100015407 + Gm11614 antisense antisense MGP_CASTEiJ_T0030281.1 MGP_CASTEiJ_G0018047.1 mouse_genomes_project 11 77522473 77538802 + MGP_CASTEiJ_P0030281 Tmigd1 protein_coding protein_coding MGP_CASTEiJ_T0030282.1 MGP_CASTEiJ_G0018047.1 mouse_genomes_project 11 77524791 77532320 + MGP_CASTEiJ_P0030282 Tmigd1 protein_coding protein_coding MGP_CASTEiJ_T0030283.1 MGP_CASTEiJ_G0018047.1 mouse_genomes_project 11 77524861 77538801 + MGP_CASTEiJ_P0030283 Tmigd1 protein_coding protein_coding MGP_CASTEiJ_T0030284.1 MGP_CASTEiJ_G0018047.1 mouse_genomes_project 11 77524878 77538312 + Tmigd1 protein_coding processed_transcript MGP_CASTEiJ_T0012423.1 MGP_CASTEiJ_G0010586.1 mouse_genomes_project 11 121212504 121212952 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101987.1 MGP_CASTEiJ_G0038712.1 mouse_genomes_project 11 59103264 59103639 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0012351.1 MGP_CASTEiJ_G0010514.1 mouse_genomes_project 11 89467091 89467503 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0027792.1 MGP_CASTEiJ_G0017433.1 mouse_genomes_project 11 28705085 28820428 + MGP_CASTEiJ_P0027792 Psme4 protein_coding protein_coding MGP_CASTEiJ_T0027793.1 MGP_CASTEiJ_G0017433.1 mouse_genomes_project 11 28705680 28741831 + MGP_CASTEiJ_P0027793 Psme4 protein_coding protein_coding MGP_CASTEiJ_T0027794.1 MGP_CASTEiJ_G0017433.1 mouse_genomes_project 11 28748993 28751007 + Psme4 protein_coding processed_transcript MGP_CASTEiJ_T0027795.1 MGP_CASTEiJ_G0017433.1 mouse_genomes_project 11 28767423 28772358 + Psme4 protein_coding processed_transcript MGP_CASTEiJ_T0027796.1 MGP_CASTEiJ_G0017433.1 mouse_genomes_project 11 28769701 28771255 + Psme4 protein_coding processed_transcript MGP_CASTEiJ_T0027797.1 MGP_CASTEiJ_G0017433.1 mouse_genomes_project 11 28790652 28798252 + MGP_CASTEiJ_P0027797 Psme4 protein_coding protein_coding MGP_CASTEiJ_T0027798.1 MGP_CASTEiJ_G0017433.1 mouse_genomes_project 11 28806528 28814263 + Psme4 protein_coding processed_transcript MGP_CASTEiJ_T0027606.1 MGP_CASTEiJ_G0017398.1 mouse_genomes_project 11 20538979 20542288 + MGP_CASTEiJ_P0027606 Zrsr1 protein_coding protein_coding MGP_CASTEiJ_T0031009.1 MGP_CASTEiJ_G0018216.1 mouse_genomes_project 11 89074085 89098249 + MGP_CASTEiJ_P0031009 Mtmr4 protein_coding protein_coding MGP_CASTEiJ_T0031010.1 MGP_CASTEiJ_G0018216.1 mouse_genomes_project 11 89074142 89098249 + MGP_CASTEiJ_P0031010 Mtmr4 protein_coding protein_coding MGP_CASTEiJ_T0031011.1 MGP_CASTEiJ_G0018216.1 mouse_genomes_project 11 89074149 89080861 + MGP_CASTEiJ_P0031011 Mtmr4 protein_coding protein_coding MGP_CASTEiJ_T0031012.1 MGP_CASTEiJ_G0018216.1 mouse_genomes_project 11 89074387 89079644 + MGP_CASTEiJ_P0031012 Mtmr4 protein_coding protein_coding MGP_CASTEiJ_T0031013.1 MGP_CASTEiJ_G0018216.1 mouse_genomes_project 11 89074820 89097122 + MGP_CASTEiJ_P0031013 Mtmr4 protein_coding protein_coding MGP_CASTEiJ_T0031014.1 MGP_CASTEiJ_G0018216.1 mouse_genomes_project 11 89074907 89096240 + MGP_CASTEiJ_P0031014 Mtmr4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031015.1 MGP_CASTEiJ_G0018216.1 mouse_genomes_project 11 89077573 89082993 + MGP_CASTEiJ_P0031015 Mtmr4 protein_coding protein_coding MGP_CASTEiJ_T0028144.1 MGP_CASTEiJ_G0017532.1 mouse_genomes_project 11 47809692 47821868 + Ifi47 protein_coding processed_transcript MGP_CASTEiJ_T0028146.1 MGP_CASTEiJ_G0017532.1 mouse_genomes_project 11 47810031 47823404 + MGP_CASTEiJ_P0028146 Ifi47 protein_coding protein_coding MGP_CASTEiJ_T0032731.1 MGP_CASTEiJ_G0018626.1 mouse_genomes_project 11 110947926 110962477 - MGP_CASTEiJ_P0032731 Cacng1 protein_coding protein_coding MGP_CASTEiJ_T0099212.1 MGP_CASTEiJ_G0036125.1 mouse_genomes_project 11 499986 500115 - Gm26393 snRNA snRNA MGP_CASTEiJ_T0099287.1 MGP_CASTEiJ_G0036200.1 mouse_genomes_project 11 122339117 122339212 - Gm24060 snRNA snRNA MGP_CASTEiJ_T0028890.1 MGP_CASTEiJ_G0017730.1 mouse_genomes_project 11 60085378 60103192 + Alkbh5 protein_coding processed_transcript MGP_CASTEiJ_T0028891.1 MGP_CASTEiJ_G0017730.1 mouse_genomes_project 11 60086976 60107287 + MGP_CASTEiJ_P0028891 Alkbh5 protein_coding protein_coding MGP_CASTEiJ_T0027046.1 MGP_CASTEiJ_G0017275.1 mouse_genomes_project 11 319184 329574 - MGP_CASTEiJ_P0027046 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027047.1 MGP_CASTEiJ_G0017275.1 mouse_genomes_project 11 319184 329577 - MGP_CASTEiJ_P0027047 protein_coding non_stop_decay MGP_CASTEiJ_T0027048.1 MGP_CASTEiJ_G0017275.1 mouse_genomes_project 11 319184 326936 - MGP_CASTEiJ_P0027048 protein_coding protein_coding MGP_CASTEiJ_T0027049.1 MGP_CASTEiJ_G0017275.1 mouse_genomes_project 11 319349 329589 - MGP_CASTEiJ_P0027049 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027050.1 MGP_CASTEiJ_G0017275.1 mouse_genomes_project 11 319462 330325 - MGP_CASTEiJ_P0027050 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027051.1 MGP_CASTEiJ_G0017275.1 mouse_genomes_project 11 323755 329602 - MGP_CASTEiJ_P0027051 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032763.1 MGP_CASTEiJ_G0018633.1 mouse_genomes_project 11 112208524 112242361 + MGP_CASTEiJ_P0032763 Axin2 protein_coding protein_coding MGP_CASTEiJ_T0032764.1 MGP_CASTEiJ_G0018633.1 mouse_genomes_project 11 112208975 112213544 + MGP_CASTEiJ_P0032764 Axin2 protein_coding protein_coding MGP_CASTEiJ_T0032765.1 MGP_CASTEiJ_G0018633.1 mouse_genomes_project 11 112209510 112213559 + MGP_CASTEiJ_P0032765 Axin2 protein_coding protein_coding MGP_CASTEiJ_T0032766.1 MGP_CASTEiJ_G0018633.1 mouse_genomes_project 11 112209822 112213455 + MGP_CASTEiJ_P0032766 Axin2 protein_coding protein_coding MGP_CASTEiJ_T0032767.1 MGP_CASTEiJ_G0018633.1 mouse_genomes_project 11 112210759 112239382 + MGP_CASTEiJ_P0032767 Axin2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032768.1 MGP_CASTEiJ_G0018633.1 mouse_genomes_project 11 112213141 112239372 + MGP_CASTEiJ_P0032768 Axin2 protein_coding protein_coding MGP_CASTEiJ_T0032769.1 MGP_CASTEiJ_G0018633.1 mouse_genomes_project 11 112228810 112232484 + Axin2 protein_coding processed_transcript MGP_CASTEiJ_T0032770.1 MGP_CASTEiJ_G0018633.1 mouse_genomes_project 11 112233438 112242361 + Axin2 protein_coding processed_transcript MGP_CASTEiJ_T0006162.1 MGP_CASTEiJ_G0005152.1 mouse_genomes_project 11 98332192 98333445 + Gm11535 lincRNA lincRNA MGP_CASTEiJ_T0003234.1 MGP_CASTEiJ_G0002992.1 mouse_genomes_project 11 120547652 120551545 - Gm29292 antisense antisense MGP_CASTEiJ_T0031476.1 MGP_CASTEiJ_G0018326.1 mouse_genomes_project 11 99175197 99201262 - MGP_CASTEiJ_P0031476 Sp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031477.1 MGP_CASTEiJ_G0018326.1 mouse_genomes_project 11 99175203 99201257 - MGP_CASTEiJ_P0031477 Sp2 protein_coding protein_coding MGP_CASTEiJ_T0031860.1 MGP_CASTEiJ_G0018457.1 mouse_genomes_project 11 103023919 103027734 - Jup protein_coding processed_transcript MGP_CASTEiJ_T0031861.1 MGP_CASTEiJ_G0018457.1 mouse_genomes_project 11 103025579 103058972 - MGP_CASTEiJ_P0031861 Jup protein_coding protein_coding MGP_CASTEiJ_T0031862.1 MGP_CASTEiJ_G0018457.1 mouse_genomes_project 11 103026021 103029118 - Jup protein_coding processed_transcript MGP_CASTEiJ_T0031863.1 MGP_CASTEiJ_G0018457.1 mouse_genomes_project 11 103027313 103058972 - MGP_CASTEiJ_P0031863 Jup protein_coding protein_coding MGP_CASTEiJ_T0031864.1 MGP_CASTEiJ_G0018457.1 mouse_genomes_project 11 103027374 103028314 - Jup protein_coding processed_transcript MGP_CASTEiJ_T0031865.1 MGP_CASTEiJ_G0018457.1 mouse_genomes_project 11 103040401 103042216 - Jup protein_coding processed_transcript MGP_CASTEiJ_T0031866.1 MGP_CASTEiJ_G0018457.1 mouse_genomes_project 11 103042438 103058986 - Jup protein_coding processed_transcript MGP_CASTEiJ_T0031867.1 MGP_CASTEiJ_G0018457.1 mouse_genomes_project 11 103042518 103045858 - Jup protein_coding processed_transcript MGP_CASTEiJ_T0031868.1 MGP_CASTEiJ_G0018457.1 mouse_genomes_project 11 103042527 103045887 - Jup protein_coding processed_transcript MGP_CASTEiJ_T0033396.1 MGP_CASTEiJ_G0018754.1 mouse_genomes_project 11 121931616 121941046 + MGP_CASTEiJ_P0033396 6030468B19Rik protein_coding protein_coding MGP_CASTEiJ_T0030981.1 MGP_CASTEiJ_G0018212.1 mouse_genomes_project 11 88838307 88867751 - MGP_CASTEiJ_P0030981 Rad51c protein_coding protein_coding MGP_CASTEiJ_T0030982.1 MGP_CASTEiJ_G0018212.1 mouse_genomes_project 11 88840221 88867734 - MGP_CASTEiJ_P0030982 Rad51c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030983.1 MGP_CASTEiJ_G0018212.1 mouse_genomes_project 11 88840727 88868182 - MGP_CASTEiJ_P0030983 Rad51c protein_coding protein_coding MGP_CASTEiJ_T0030984.1 MGP_CASTEiJ_G0018212.1 mouse_genomes_project 11 88841008 88867642 - MGP_CASTEiJ_P0030984 Rad51c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009468.1 MGP_CASTEiJ_G0007656.1 mouse_genomes_project 11 76105750 76105833 + Mir3971 miRNA miRNA MGP_CASTEiJ_T0006202.1 MGP_CASTEiJ_G0005181.1 mouse_genomes_project 11 120296079 120298715 + Gm26730 lincRNA lincRNA MGP_CASTEiJ_T0098825.1 MGP_CASTEiJ_G0035753.1 mouse_genomes_project 11 123059661 123060579 - Gm11749 sense_intronic sense_intronic MGP_CASTEiJ_T0009482.1 MGP_CASTEiJ_G0007670.1 mouse_genomes_project 11 89248844 89248959 - Mir142b miRNA miRNA MGP_CASTEiJ_T0012303.1 MGP_CASTEiJ_G0010466.1 mouse_genomes_project 11 70977292 70977562 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031017.1 MGP_CASTEiJ_G0018218.1 mouse_genomes_project 11 89146963 89221469 + Rnf43 protein_coding retained_intron MGP_CASTEiJ_T0031018.1 MGP_CASTEiJ_G0018218.1 mouse_genomes_project 11 89147328 89209180 + Rnf43 protein_coding processed_transcript MGP_CASTEiJ_T0031019.1 MGP_CASTEiJ_G0018218.1 mouse_genomes_project 11 89147328 89227151 + MGP_CASTEiJ_P0031019 Rnf43 protein_coding protein_coding MGP_CASTEiJ_T0031020.1 MGP_CASTEiJ_G0018218.1 mouse_genomes_project 11 89148517 89227152 + MGP_CASTEiJ_P0031020 Rnf43 protein_coding protein_coding MGP_CASTEiJ_T0031021.1 MGP_CASTEiJ_G0018218.1 mouse_genomes_project 11 89148792 89226151 + MGP_CASTEiJ_P0031021 Rnf43 protein_coding protein_coding MGP_CASTEiJ_T0031022.1 MGP_CASTEiJ_G0018218.1 mouse_genomes_project 11 89148859 89225810 + MGP_CASTEiJ_P0031022 Rnf43 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031023.1 MGP_CASTEiJ_G0018218.1 mouse_genomes_project 11 89187900 89227152 + MGP_CASTEiJ_P0031023 Rnf43 protein_coding protein_coding MGP_CASTEiJ_T0031024.1 MGP_CASTEiJ_G0018218.1 mouse_genomes_project 11 89218992 89222125 + Rnf43 protein_coding retained_intron MGP_CASTEiJ_T0031025.1 MGP_CASTEiJ_G0018218.1 mouse_genomes_project 11 89220908 89222711 + Rnf43 protein_coding retained_intron MGP_CASTEiJ_T0031026.1 MGP_CASTEiJ_G0018218.1 mouse_genomes_project 11 89225534 89226079 + Rnf43 protein_coding processed_transcript MGP_CASTEiJ_T0027820.1 MGP_CASTEiJ_G0017440.1 mouse_genomes_project 11 29792578 29854815 + MGP_CASTEiJ_P0027820 Cpeb4 protein_coding protein_coding MGP_CASTEiJ_T0027821.1 MGP_CASTEiJ_G0017440.1 mouse_genomes_project 11 29792593 29860171 + MGP_CASTEiJ_P0027821 Cpeb4 protein_coding protein_coding MGP_CASTEiJ_T0027822.1 MGP_CASTEiJ_G0017440.1 mouse_genomes_project 11 29793642 29860171 + MGP_CASTEiJ_P0027822 Cpeb4 protein_coding protein_coding MGP_CASTEiJ_T0012195.1 MGP_CASTEiJ_G0010358.1 mouse_genomes_project 11 27161730 27161988 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028423.1 MGP_CASTEiJ_G0017601.1 mouse_genomes_project 11 51395874 51403507 + 9530068E07Rik protein_coding processed_transcript MGP_CASTEiJ_T0028424.1 MGP_CASTEiJ_G0017601.1 mouse_genomes_project 11 51395874 51407981 + MGP_CASTEiJ_P0028424 9530068E07Rik protein_coding protein_coding MGP_CASTEiJ_T0028425.1 MGP_CASTEiJ_G0017601.1 mouse_genomes_project 11 51395874 51407976 + MGP_CASTEiJ_P0028425 9530068E07Rik protein_coding protein_coding MGP_CASTEiJ_T0028426.1 MGP_CASTEiJ_G0017601.1 mouse_genomes_project 11 51396092 51402539 + 9530068E07Rik protein_coding processed_transcript MGP_CASTEiJ_T0028501.1 MGP_CASTEiJ_G0017622.1 mouse_genomes_project 11 52882401 52899765 - Gm12216 protein_coding processed_transcript MGP_CASTEiJ_T0028502.1 MGP_CASTEiJ_G0017622.1 mouse_genomes_project 11 52883275 52963619 - Gm12216 protein_coding processed_transcript MGP_CASTEiJ_T0028503.1 MGP_CASTEiJ_G0017622.1 mouse_genomes_project 11 52884464 52963731 - MGP_CASTEiJ_P0028503 Gm12216 protein_coding protein_coding MGP_CASTEiJ_T0028504.1 MGP_CASTEiJ_G0017622.1 mouse_genomes_project 11 52907622 52963704 - Gm12216 protein_coding processed_transcript MGP_CASTEiJ_T0028505.1 MGP_CASTEiJ_G0017622.1 mouse_genomes_project 11 52913207 52963731 - MGP_CASTEiJ_P0028505 Gm12216 protein_coding protein_coding MGP_CASTEiJ_T0028506.1 MGP_CASTEiJ_G0017622.1 mouse_genomes_project 11 52916927 52963731 - MGP_CASTEiJ_P0028506 Gm12216 protein_coding protein_coding MGP_CASTEiJ_T0027576.1 MGP_CASTEiJ_G0017391.1 mouse_genomes_project 11 19499465 19506307 - MGP_CASTEiJ_P0027576 Otx1 protein_coding protein_coding MGP_CASTEiJ_T0027577.1 MGP_CASTEiJ_G0017391.1 mouse_genomes_project 11 19499470 19506402 - Otx1 protein_coding retained_intron MGP_CASTEiJ_T0027578.1 MGP_CASTEiJ_G0017391.1 mouse_genomes_project 11 19501543 19508904 - MGP_CASTEiJ_P0027578 Otx1 protein_coding protein_coding MGP_CASTEiJ_T0100454.1 MGP_CASTEiJ_G0037367.1 mouse_genomes_project 11 72987823 72989400 - Gm24143 snoRNA snoRNA MGP_CASTEiJ_T0029093.1 MGP_CASTEiJ_G0017765.1 mouse_genomes_project 11 62231873 62250151 - MGP_CASTEiJ_P0029093 Cenpv protein_coding protein_coding MGP_CASTEiJ_T0029094.1 MGP_CASTEiJ_G0017765.1 mouse_genomes_project 11 62231876 62235680 - Cenpv protein_coding retained_intron MGP_CASTEiJ_T0029095.1 MGP_CASTEiJ_G0017765.1 mouse_genomes_project 11 62232068 62249381 - Cenpv protein_coding processed_transcript MGP_CASTEiJ_T0029096.1 MGP_CASTEiJ_G0017765.1 mouse_genomes_project 11 62235276 62249519 - Cenpv protein_coding processed_transcript MGP_CASTEiJ_T0029097.1 MGP_CASTEiJ_G0017765.1 mouse_genomes_project 11 62244261 62249893 - MGP_CASTEiJ_P0029097 Cenpv protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029098.1 MGP_CASTEiJ_G0017765.1 mouse_genomes_project 11 62244492 62249893 - Cenpv protein_coding processed_transcript MGP_CASTEiJ_T0027319.1 MGP_CASTEiJ_G0017333.1 mouse_genomes_project 11 3188689 3207634 - MGP_CASTEiJ_P0027319 Npc1l1 protein_coding protein_coding MGP_CASTEiJ_T0012211.1 MGP_CASTEiJ_G0010374.1 mouse_genomes_project 11 31217199 31218164 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009448.1 MGP_CASTEiJ_G0007636.1 mouse_genomes_project 11 69587653 69587731 - Gm27493 miRNA miRNA MGP_CASTEiJ_T0006012.1 MGP_CASTEiJ_G0005033.1 mouse_genomes_project 11 15786810 15812510 - Gm12022 lincRNA lincRNA MGP_CASTEiJ_T0006215.1 MGP_CASTEiJ_G0005191.1 mouse_genomes_project 11 123370485 123375845 + Gm26888 lincRNA lincRNA MGP_CASTEiJ_T0006092.1 MGP_CASTEiJ_G0005102.1 mouse_genomes_project 11 63198206 63203929 + B130011K05Rik lincRNA lincRNA MGP_CASTEiJ_T0032210.1 MGP_CASTEiJ_G0018528.1 mouse_genomes_project 11 104957293 104961116 - MGP_CASTEiJ_P0032210 Tmem101 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032211.1 MGP_CASTEiJ_G0018528.1 mouse_genomes_project 11 104957300 104961166 - MGP_CASTEiJ_P0032211 Tmem101 protein_coding protein_coding MGP_CASTEiJ_T0032212.1 MGP_CASTEiJ_G0018528.1 mouse_genomes_project 11 104958925 104961110 - Tmem101 protein_coding processed_transcript MGP_CASTEiJ_T0032213.1 MGP_CASTEiJ_G0018528.1 mouse_genomes_project 11 104960566 104961118 - Tmem101 protein_coding processed_transcript MGP_CASTEiJ_T0031443.1 MGP_CASTEiJ_G0018321.1 mouse_genomes_project 11 99021044 99034327 - MGP_CASTEiJ_P0031443 Nfe2l1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031444.1 MGP_CASTEiJ_G0018321.1 mouse_genomes_project 11 99021044 99034732 - MGP_CASTEiJ_P0031444 Nfe2l1 protein_coding protein_coding MGP_CASTEiJ_T0031445.1 MGP_CASTEiJ_G0018321.1 mouse_genomes_project 11 99021044 99034327 - MGP_CASTEiJ_P0031445 Nfe2l1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031446.1 MGP_CASTEiJ_G0018321.1 mouse_genomes_project 11 99021044 99027651 - MGP_CASTEiJ_P0031446 Nfe2l1 protein_coding protein_coding MGP_CASTEiJ_T0031447.1 MGP_CASTEiJ_G0018321.1 mouse_genomes_project 11 99021229 99032496 - MGP_CASTEiJ_P0031447 Nfe2l1 protein_coding protein_coding MGP_CASTEiJ_T0031448.1 MGP_CASTEiJ_G0018321.1 mouse_genomes_project 11 99023720 99027765 - MGP_CASTEiJ_P0031448 Nfe2l1 protein_coding protein_coding MGP_CASTEiJ_T0031449.1 MGP_CASTEiJ_G0018321.1 mouse_genomes_project 11 99024097 99027646 - MGP_CASTEiJ_P0031449 Nfe2l1 protein_coding protein_coding MGP_CASTEiJ_T0031450.1 MGP_CASTEiJ_G0018321.1 mouse_genomes_project 11 99024974 99026363 - Nfe2l1 protein_coding processed_transcript MGP_CASTEiJ_T0031451.1 MGP_CASTEiJ_G0018321.1 mouse_genomes_project 11 99025860 99028190 - Nfe2l1 protein_coding processed_transcript MGP_CASTEiJ_T0031452.1 MGP_CASTEiJ_G0018321.1 mouse_genomes_project 11 99032509 99034287 - Nfe2l1 protein_coding processed_transcript MGP_CASTEiJ_T0099284.1 MGP_CASTEiJ_G0036197.1 mouse_genomes_project 11 112369317 112369424 - Gm24149 snRNA snRNA MGP_CASTEiJ_T0009507.1 MGP_CASTEiJ_G0007695.1 mouse_genomes_project 11 105919792 105919875 - Mir6931 miRNA miRNA MGP_CASTEiJ_T0032897.1 MGP_CASTEiJ_G0018662.1 mouse_genomes_project 11 118472460 118527216 + MGP_CASTEiJ_P0032897 Ttyh2 protein_coding protein_coding MGP_CASTEiJ_T0032898.1 MGP_CASTEiJ_G0018662.1 mouse_genomes_project 11 118472545 118490869 + Ttyh2 protein_coding processed_transcript MGP_CASTEiJ_T0030356.1 MGP_CASTEiJ_G0018061.1 mouse_genomes_project 11 78414280 78417537 - Cryba1 protein_coding retained_intron MGP_CASTEiJ_T0030357.1 MGP_CASTEiJ_G0018061.1 mouse_genomes_project 11 78414292 78420997 - MGP_CASTEiJ_P0030357 Cryba1 protein_coding protein_coding MGP_CASTEiJ_T0028809.1 MGP_CASTEiJ_G0017716.1 mouse_genomes_project 11 59298486 59317106 - MGP_CASTEiJ_P0028809 Flcn protein_coding protein_coding MGP_CASTEiJ_T0028810.1 MGP_CASTEiJ_G0017716.1 mouse_genomes_project 11 59298535 59317014 - Flcn protein_coding retained_intron MGP_CASTEiJ_T0028811.1 MGP_CASTEiJ_G0017716.1 mouse_genomes_project 11 59298868 59316678 - MGP_CASTEiJ_P0028811 Flcn protein_coding protein_coding MGP_CASTEiJ_T0028812.1 MGP_CASTEiJ_G0017716.1 mouse_genomes_project 11 59310833 59316691 - Flcn protein_coding processed_transcript MGP_CASTEiJ_T0028813.1 MGP_CASTEiJ_G0017716.1 mouse_genomes_project 11 59311592 59317084 - MGP_CASTEiJ_P0028813 Flcn protein_coding protein_coding MGP_CASTEiJ_T0028814.1 MGP_CASTEiJ_G0017716.1 mouse_genomes_project 11 59316118 59316801 - Flcn protein_coding retained_intron MGP_CASTEiJ_T0027531.1 MGP_CASTEiJ_G0017382.1 mouse_genomes_project 11 17688673 17720880 - MGP_CASTEiJ_P0027531 Slc1a4 protein_coding protein_coding MGP_CASTEiJ_T0027532.1 MGP_CASTEiJ_G0017382.1 mouse_genomes_project 11 17690647 17720544 - MGP_CASTEiJ_P0027532 Slc1a4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027533.1 MGP_CASTEiJ_G0017382.1 mouse_genomes_project 11 17690650 17720537 - MGP_CASTEiJ_P0027533 Slc1a4 protein_coding protein_coding MGP_CASTEiJ_T0029987.1 MGP_CASTEiJ_G0017962.1 mouse_genomes_project 11 73588464 73589983 - MGP_CASTEiJ_P0029987 Emc6 protein_coding protein_coding MGP_CASTEiJ_T0029988.1 MGP_CASTEiJ_G0017962.1 mouse_genomes_project 11 73589281 73589948 - MGP_CASTEiJ_P0029988 Emc6 protein_coding protein_coding MGP_CASTEiJ_T0012192.1 MGP_CASTEiJ_G0010355.1 mouse_genomes_project 11 25735252 25738333 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006222.1 MGP_CASTEiJ_G0005198.1 mouse_genomes_project 11 126210232 126210439 + Gm29513 lincRNA lincRNA MGP_CASTEiJ_T0012417.1 MGP_CASTEiJ_G0010580.1 mouse_genomes_project 11 119490464 119491001 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0028536.1 MGP_CASTEiJ_G0017630.1 mouse_genomes_project 11 53446861 53506777 + MGP_CASTEiJ_P0028536 Acsl6 protein_coding protein_coding MGP_CASTEiJ_T0028537.1 MGP_CASTEiJ_G0017630.1 mouse_genomes_project 11 53446878 53470600 + MGP_CASTEiJ_P0028537 Acsl6 protein_coding protein_coding MGP_CASTEiJ_T0028538.1 MGP_CASTEiJ_G0017630.1 mouse_genomes_project 11 53447010 53506654 + MGP_CASTEiJ_P0028538 Acsl6 protein_coding protein_coding MGP_CASTEiJ_T0028539.1 MGP_CASTEiJ_G0017630.1 mouse_genomes_project 11 53447010 53506654 + MGP_CASTEiJ_P0028539 Acsl6 protein_coding protein_coding MGP_CASTEiJ_T0028540.1 MGP_CASTEiJ_G0017630.1 mouse_genomes_project 11 53447010 53506654 + MGP_CASTEiJ_P0028540 Acsl6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028541.1 MGP_CASTEiJ_G0017630.1 mouse_genomes_project 11 53456687 53470054 + MGP_CASTEiJ_P0028541 Acsl6 protein_coding protein_coding MGP_CASTEiJ_T0028542.1 MGP_CASTEiJ_G0017630.1 mouse_genomes_project 11 53459964 53484766 + MGP_CASTEiJ_P0028542 Acsl6 protein_coding protein_coding MGP_CASTEiJ_T0028543.1 MGP_CASTEiJ_G0017630.1 mouse_genomes_project 11 53459964 53483210 + MGP_CASTEiJ_P0028543 Acsl6 protein_coding protein_coding MGP_CASTEiJ_T0028544.1 MGP_CASTEiJ_G0017630.1 mouse_genomes_project 11 53465118 53484553 + MGP_CASTEiJ_P0028544 Acsl6 protein_coding protein_coding MGP_CASTEiJ_T0028545.1 MGP_CASTEiJ_G0017630.1 mouse_genomes_project 11 53480969 53506781 + Acsl6 protein_coding processed_transcript MGP_CASTEiJ_T0028546.1 MGP_CASTEiJ_G0017630.1 mouse_genomes_project 11 53491366 53506770 + MGP_CASTEiJ_P0028546 Acsl6 protein_coding protein_coding MGP_CASTEiJ_T0032667.1 MGP_CASTEiJ_G0018616.1 mouse_genomes_project 11 109922839 109936447 - MGP_CASTEiJ_P0032667 Polg2 protein_coding protein_coding MGP_CASTEiJ_T0032668.1 MGP_CASTEiJ_G0018616.1 mouse_genomes_project 11 109922839 109936469 - MGP_CASTEiJ_P0032668 Polg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032669.1 MGP_CASTEiJ_G0018616.1 mouse_genomes_project 11 109923323 109936405 - MGP_CASTEiJ_P0032669 Polg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032670.1 MGP_CASTEiJ_G0018616.1 mouse_genomes_project 11 109925606 109936405 - MGP_CASTEiJ_P0032670 Polg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032671.1 MGP_CASTEiJ_G0018616.1 mouse_genomes_project 11 109927077 109928283 - Polg2 protein_coding retained_intron MGP_CASTEiJ_T0032672.1 MGP_CASTEiJ_G0018616.1 mouse_genomes_project 11 109929945 109936434 - MGP_CASTEiJ_P0032672 Polg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031119.1 MGP_CASTEiJ_G0018241.1 mouse_genomes_project 11 90705871 90730118 + MGP_CASTEiJ_P0031119 Gm525 protein_coding protein_coding MGP_CASTEiJ_T0031120.1 MGP_CASTEiJ_G0018241.1 mouse_genomes_project 11 90707039 90730043 + MGP_CASTEiJ_P0031120 Gm525 protein_coding protein_coding MGP_CASTEiJ_T0028928.1 MGP_CASTEiJ_G0017738.1 mouse_genomes_project 11 60453985 60468381 - MGP_CASTEiJ_P0028928 Tmem11 protein_coding protein_coding MGP_CASTEiJ_T0028929.1 MGP_CASTEiJ_G0017738.1 mouse_genomes_project 11 60453985 60468615 - MGP_CASTEiJ_P0028929 Tmem11 protein_coding protein_coding MGP_CASTEiJ_T0028930.1 MGP_CASTEiJ_G0017738.1 mouse_genomes_project 11 60454519 60468130 - MGP_CASTEiJ_P0028930 Tmem11 protein_coding protein_coding MGP_CASTEiJ_T0099240.1 MGP_CASTEiJ_G0036153.1 mouse_genomes_project 11 68941906 68942009 + Gm22608 snRNA snRNA MGP_CASTEiJ_T0031149.1 MGP_CASTEiJ_G0018251.1 mouse_genomes_project 11 92354936 92401402 - MGP_CASTEiJ_P0031149 Tom1l1 protein_coding protein_coding MGP_CASTEiJ_T0031150.1 MGP_CASTEiJ_G0018251.1 mouse_genomes_project 11 92357224 92378067 - MGP_CASTEiJ_P0031150 Tom1l1 protein_coding protein_coding MGP_CASTEiJ_T0031151.1 MGP_CASTEiJ_G0018251.1 mouse_genomes_project 11 92357225 92401374 - MGP_CASTEiJ_P0031151 Tom1l1 protein_coding protein_coding MGP_CASTEiJ_T0031152.1 MGP_CASTEiJ_G0018251.1 mouse_genomes_project 11 92358874 92362546 - Tom1l1 protein_coding retained_intron MGP_CASTEiJ_T0031153.1 MGP_CASTEiJ_G0018251.1 mouse_genomes_project 11 92361756 92401365 - MGP_CASTEiJ_P0031153 Tom1l1 protein_coding protein_coding MGP_CASTEiJ_T0031154.1 MGP_CASTEiJ_G0018251.1 mouse_genomes_project 11 92369641 92378380 - Tom1l1 protein_coding retained_intron MGP_CASTEiJ_T0031155.1 MGP_CASTEiJ_G0018251.1 mouse_genomes_project 11 92385729 92401383 - MGP_CASTEiJ_P0031155 Tom1l1 protein_coding protein_coding MGP_CASTEiJ_T0031156.1 MGP_CASTEiJ_G0018251.1 mouse_genomes_project 11 92397736 92402161 - Tom1l1 protein_coding processed_transcript MGP_CASTEiJ_T0029114.1 MGP_CASTEiJ_G0017769.1 mouse_genomes_project 11 62428516 62462756 - MGP_CASTEiJ_P0029114 Zfp287 protein_coding protein_coding MGP_CASTEiJ_T0029115.1 MGP_CASTEiJ_G0017769.1 mouse_genomes_project 11 62441953 62462762 - MGP_CASTEiJ_P0029115 Zfp287 protein_coding protein_coding MGP_CASTEiJ_T0029116.1 MGP_CASTEiJ_G0017769.1 mouse_genomes_project 11 62448514 62459502 - MGP_CASTEiJ_P0029116 Zfp287 protein_coding protein_coding MGP_CASTEiJ_T0029117.1 MGP_CASTEiJ_G0017769.1 mouse_genomes_project 11 62455718 62462776 - Zfp287 protein_coding retained_intron MGP_CASTEiJ_T0012404.1 MGP_CASTEiJ_G0010567.1 mouse_genomes_project 11 112302647 112303836 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003131.1 MGP_CASTEiJ_G0002911.1 mouse_genomes_project 11 82385727 82410597 + 4930527B05Rik antisense antisense MGP_CASTEiJ_T0033657.1 MGP_CASTEiJ_G0018804.1 mouse_genomes_project 11 124779785 124781245 - MGP_CASTEiJ_P0033657 Oxld1 protein_coding protein_coding MGP_CASTEiJ_T0033658.1 MGP_CASTEiJ_G0018804.1 mouse_genomes_project 11 124780064 124781113 - MGP_CASTEiJ_P0033658 Oxld1 protein_coding protein_coding MGP_CASTEiJ_T0016515.1 MGP_CASTEiJ_G0014514.1 mouse_genomes_project 11 99281856 99284616 - Gm11574 processed_transcript processed_transcript MGP_CASTEiJ_T0030779.1 MGP_CASTEiJ_G0018163.1 mouse_genomes_project 11 84772186 84777530 - MGP_CASTEiJ_P0030779 Ccl6 protein_coding protein_coding MGP_CASTEiJ_T0030780.1 MGP_CASTEiJ_G0018163.1 mouse_genomes_project 11 84772699 84774166 - Ccl6 protein_coding retained_intron MGP_CASTEiJ_T0030781.1 MGP_CASTEiJ_G0018163.1 mouse_genomes_project 11 84773771 84777418 - Ccl6 protein_coding retained_intron MGP_CASTEiJ_T0029230.1 MGP_CASTEiJ_G0017800.1 mouse_genomes_project 11 67410445 67633090 + Gas7 protein_coding processed_transcript MGP_CASTEiJ_T0029231.1 MGP_CASTEiJ_G0017800.1 mouse_genomes_project 11 67506815 67546276 + Gas7 protein_coding processed_transcript MGP_CASTEiJ_T0029232.1 MGP_CASTEiJ_G0017800.1 mouse_genomes_project 11 67547243 67569418 + Gas7 protein_coding processed_transcript MGP_CASTEiJ_T0029233.1 MGP_CASTEiJ_G0017800.1 mouse_genomes_project 11 67547279 67657051 + MGP_CASTEiJ_P0029233 Gas7 protein_coding protein_coding MGP_CASTEiJ_T0029234.1 MGP_CASTEiJ_G0017800.1 mouse_genomes_project 11 67558776 67657062 + MGP_CASTEiJ_P0029234 Gas7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029235.1 MGP_CASTEiJ_G0017800.1 mouse_genomes_project 11 67558810 67638293 + Gas7 protein_coding processed_transcript MGP_CASTEiJ_T0029236.1 MGP_CASTEiJ_G0017800.1 mouse_genomes_project 11 67558820 67633075 + Gas7 protein_coding processed_transcript MGP_CASTEiJ_T0029237.1 MGP_CASTEiJ_G0017800.1 mouse_genomes_project 11 67620349 67651806 + Gas7 protein_coding processed_transcript MGP_CASTEiJ_T0029239.1 MGP_CASTEiJ_G0017800.1 mouse_genomes_project 11 67650289 67651682 + Gas7 protein_coding processed_transcript MGP_CASTEiJ_T0027206.1 MGP_CASTEiJ_G0017310.1 mouse_genomes_project 11 1973171 1984217 - Gas2l1 protein_coding processed_transcript MGP_CASTEiJ_T0027207.1 MGP_CASTEiJ_G0017310.1 mouse_genomes_project 11 1974408 1984223 - MGP_CASTEiJ_P0027207 Gas2l1 protein_coding protein_coding MGP_CASTEiJ_T0027210.1 MGP_CASTEiJ_G0017310.1 mouse_genomes_project 11 1979307 1984250 - MGP_CASTEiJ_P0027210 Gas2l1 protein_coding protein_coding MGP_CASTEiJ_T0027211.1 MGP_CASTEiJ_G0017310.1 mouse_genomes_project 11 1979316 1984200 - MGP_CASTEiJ_P0027211 Gas2l1 protein_coding protein_coding MGP_CASTEiJ_T0027212.1 MGP_CASTEiJ_G0017310.1 mouse_genomes_project 11 1979405 1983775 - Gas2l1 protein_coding processed_transcript MGP_CASTEiJ_T0027213.1 MGP_CASTEiJ_G0017310.1 mouse_genomes_project 11 1979672 1984179 - MGP_CASTEiJ_P0027213 Gas2l1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027214.1 MGP_CASTEiJ_G0017310.1 mouse_genomes_project 11 1982796 1984201 - MGP_CASTEiJ_P0027214 Gas2l1 protein_coding protein_coding MGP_CASTEiJ_T0027215.1 MGP_CASTEiJ_G0017310.1 mouse_genomes_project 11 1983340 1984217 - Gas2l1 protein_coding processed_transcript MGP_CASTEiJ_T0032539.1 MGP_CASTEiJ_G0018587.1 mouse_genomes_project 11 108239386 108352923 + MGP_CASTEiJ_P0032539 Tlk2 protein_coding protein_coding MGP_CASTEiJ_T0032540.1 MGP_CASTEiJ_G0018587.1 mouse_genomes_project 11 108241323 108275595 + Tlk2 protein_coding retained_intron MGP_CASTEiJ_T0032541.1 MGP_CASTEiJ_G0018587.1 mouse_genomes_project 11 108242105 108351150 + MGP_CASTEiJ_P0032541 Tlk2 protein_coding protein_coding MGP_CASTEiJ_T0032542.1 MGP_CASTEiJ_G0018587.1 mouse_genomes_project 11 108242231 108345483 + MGP_CASTEiJ_P0032542 Tlk2 protein_coding protein_coding MGP_CASTEiJ_T0032543.1 MGP_CASTEiJ_G0018587.1 mouse_genomes_project 11 108242355 108351149 + MGP_CASTEiJ_P0032543 Tlk2 protein_coding protein_coding MGP_CASTEiJ_T0032544.1 MGP_CASTEiJ_G0018587.1 mouse_genomes_project 11 108242420 108345897 + MGP_CASTEiJ_P0032544 Tlk2 protein_coding protein_coding MGP_CASTEiJ_T0032545.1 MGP_CASTEiJ_G0018587.1 mouse_genomes_project 11 108242437 108351149 + MGP_CASTEiJ_P0032545 Tlk2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0032546.1 MGP_CASTEiJ_G0018587.1 mouse_genomes_project 11 108242655 108276298 + MGP_CASTEiJ_P0032546 Tlk2 protein_coding protein_coding MGP_CASTEiJ_T0032547.1 MGP_CASTEiJ_G0018587.1 mouse_genomes_project 11 108273163 108307661 + Tlk2 protein_coding retained_intron MGP_CASTEiJ_T0032548.1 MGP_CASTEiJ_G0018587.1 mouse_genomes_project 11 108274592 108316504 + MGP_CASTEiJ_P0032548 Tlk2 protein_coding protein_coding MGP_CASTEiJ_T0032549.1 MGP_CASTEiJ_G0018587.1 mouse_genomes_project 11 108313776 108314693 + Tlk2 protein_coding retained_intron MGP_CASTEiJ_T0032550.1 MGP_CASTEiJ_G0018587.1 mouse_genomes_project 11 108321752 108340136 + Tlk2 protein_coding processed_transcript MGP_CASTEiJ_T0012220.1 MGP_CASTEiJ_G0010383.1 mouse_genomes_project 11 38843208 38843674 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009433.1 MGP_CASTEiJ_G0007621.1 mouse_genomes_project 11 52858796 52858854 - Mir7671 miRNA miRNA MGP_CASTEiJ_T0028714.1 MGP_CASTEiJ_G0017688.1 mouse_genomes_project 11 58190352 58200783 - MGP_CASTEiJ_P0028714 Fam183b protein_coding protein_coding MGP_CASTEiJ_T0028715.1 MGP_CASTEiJ_G0017688.1 mouse_genomes_project 11 58190366 58200783 - MGP_CASTEiJ_P0028715 Fam183b protein_coding protein_coding MGP_CASTEiJ_T0032391.1 MGP_CASTEiJ_G0018556.1 mouse_genomes_project 11 105851227 105858637 - MGP_CASTEiJ_P0032391 C1ql1 protein_coding protein_coding MGP_CASTEiJ_T0027151.1 MGP_CASTEiJ_G0017299.1 mouse_genomes_project 11 1360329 1475883 - MGP_CASTEiJ_P0027151 Mtmr3 protein_coding protein_coding MGP_CASTEiJ_T0027152.1 MGP_CASTEiJ_G0017299.1 mouse_genomes_project 11 1360336 1367831 - Mtmr3 protein_coding processed_transcript MGP_CASTEiJ_T0027153.1 MGP_CASTEiJ_G0017299.1 mouse_genomes_project 11 1360336 1427510 - MGP_CASTEiJ_P0027153 Mtmr3 protein_coding protein_coding MGP_CASTEiJ_T0027154.1 MGP_CASTEiJ_G0017299.1 mouse_genomes_project 11 1360351 1408295 - MGP_CASTEiJ_P0027154 Mtmr3 protein_coding protein_coding MGP_CASTEiJ_T0027155.1 MGP_CASTEiJ_G0017299.1 mouse_genomes_project 11 1362020 1475931 - MGP_CASTEiJ_P0027155 Mtmr3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0027156.1 MGP_CASTEiJ_G0017299.1 mouse_genomes_project 11 1362213 1408295 - MGP_CASTEiJ_P0027156 Mtmr3 protein_coding protein_coding MGP_CASTEiJ_T0027157.1 MGP_CASTEiJ_G0017299.1 mouse_genomes_project 11 1371271 1372783 - Mtmr3 protein_coding processed_transcript MGP_CASTEiJ_T0032525.1 MGP_CASTEiJ_G0018583.1 mouse_genomes_project 11 107643914 107702628 + MGP_CASTEiJ_P0032525 Itgb3 protein_coding protein_coding MGP_CASTEiJ_T0032526.1 MGP_CASTEiJ_G0018583.1 mouse_genomes_project 11 107673909 107701965 + Itgb3 protein_coding processed_transcript MGP_CASTEiJ_T0031027.1 MGP_CASTEiJ_G0018219.1 mouse_genomes_project 11 89229179 89249282 + MGP_CASTEiJ_P0031027 Supt4a protein_coding unknown_likely_coding MGP_CASTEiJ_T0100412.1 MGP_CASTEiJ_G0037325.1 mouse_genomes_project 11 3558509 3558642 - Snora9 snoRNA snoRNA MGP_CASTEiJ_T0100413.1 MGP_CASTEiJ_G0037326.1 mouse_genomes_project 11 3571138 3571227 - Gm24000 snoRNA snoRNA MGP_CASTEiJ_T0029439.1 MGP_CASTEiJ_G0017848.1 mouse_genomes_project 11 69702647 69705746 - MGP_CASTEiJ_P0029439 Shbg protein_coding protein_coding MGP_CASTEiJ_T0029440.1 MGP_CASTEiJ_G0017848.1 mouse_genomes_project 11 69703487 69704782 - Shbg protein_coding processed_transcript MGP_CASTEiJ_T0030858.1 MGP_CASTEiJ_G0018184.1 mouse_genomes_project 11 86191085 86222788 + MGP_CASTEiJ_P0030858 Myo19 protein_coding protein_coding MGP_CASTEiJ_T0030859.1 MGP_CASTEiJ_G0018184.1 mouse_genomes_project 11 86191107 86193931 + Myo19 protein_coding processed_transcript MGP_CASTEiJ_T0030860.1 MGP_CASTEiJ_G0018184.1 mouse_genomes_project 11 86191157 86222684 + Myo19 protein_coding processed_transcript MGP_CASTEiJ_T0030861.1 MGP_CASTEiJ_G0018184.1 mouse_genomes_project 11 86191247 86191941 + Myo19 protein_coding processed_transcript MGP_CASTEiJ_T0030862.1 MGP_CASTEiJ_G0018184.1 mouse_genomes_project 11 86191290 86222693 + Myo19 protein_coding processed_transcript MGP_CASTEiJ_T0030863.1 MGP_CASTEiJ_G0018184.1 mouse_genomes_project 11 86191304 86205048 + MGP_CASTEiJ_P0030863 Myo19 protein_coding protein_coding MGP_CASTEiJ_T0030864.1 MGP_CASTEiJ_G0018184.1 mouse_genomes_project 11 86193523 86222684 + Myo19 protein_coding processed_transcript MGP_CASTEiJ_T0027594.1 MGP_CASTEiJ_G0017394.1 mouse_genomes_project 11 20323538 20423263 - MGP_CASTEiJ_P0027594 Gm12057 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0099268.1 MGP_CASTEiJ_G0036181.1 mouse_genomes_project 11 96971964 96972089 + Gm22456 snRNA snRNA MGP_CASTEiJ_T0028186.1 MGP_CASTEiJ_G0017542.1 mouse_genomes_project 11 48134484 48135557 + MGP_CASTEiJ_P0028186 Olfr1389 protein_coding protein_coding MGP_CASTEiJ_T0033244.1 MGP_CASTEiJ_G0018729.1 mouse_genomes_project 11 120328861 120409493 - MGP_CASTEiJ_P0033244 Rnf157 protein_coding protein_coding MGP_CASTEiJ_T0033245.1 MGP_CASTEiJ_G0018729.1 mouse_genomes_project 11 120328861 120354501 - MGP_CASTEiJ_P0033245 Rnf157 protein_coding protein_coding MGP_CASTEiJ_T0033246.1 MGP_CASTEiJ_G0018729.1 mouse_genomes_project 11 120328861 120409493 - MGP_CASTEiJ_P0033246 Rnf157 protein_coding protein_coding MGP_CASTEiJ_T0033247.1 MGP_CASTEiJ_G0018729.1 mouse_genomes_project 11 120330866 120341705 - Rnf157 protein_coding processed_transcript MGP_CASTEiJ_T0033248.1 MGP_CASTEiJ_G0018729.1 mouse_genomes_project 11 120330933 120342180 - MGP_CASTEiJ_P0033248 Rnf157 protein_coding protein_coding MGP_CASTEiJ_T0033249.1 MGP_CASTEiJ_G0018729.1 mouse_genomes_project 11 120346972 120354949 - Rnf157 protein_coding processed_transcript MGP_CASTEiJ_T0033250.1 MGP_CASTEiJ_G0018729.1 mouse_genomes_project 11 120348300 120349802 - Rnf157 protein_coding processed_transcript MGP_CASTEiJ_T0033251.1 MGP_CASTEiJ_G0018729.1 mouse_genomes_project 11 120352753 120354727 - Rnf157 protein_coding processed_transcript MGP_CASTEiJ_T0033252.1 MGP_CASTEiJ_G0018729.1 mouse_genomes_project 11 120354671 120355457 - Rnf157 protein_coding processed_transcript MGP_CASTEiJ_T0033253.1 MGP_CASTEiJ_G0018729.1 mouse_genomes_project 11 120355333 120386335 - Rnf157 protein_coding processed_transcript MGP_CASTEiJ_T0033254.1 MGP_CASTEiJ_G0018729.1 mouse_genomes_project 11 120397812 120409521 - Rnf157 protein_coding processed_transcript MGP_CASTEiJ_T0032940.1 MGP_CASTEiJ_G0018672.1 mouse_genomes_project 11 118848256 118856710 - MGP_CASTEiJ_P0032940 Cd300c2 protein_coding protein_coding MGP_CASTEiJ_T0032941.1 MGP_CASTEiJ_G0018672.1 mouse_genomes_project 11 118848257 118856710 - MGP_CASTEiJ_P0032941 Cd300c2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0003027.1 MGP_CASTEiJ_G0002821.1 mouse_genomes_project 11 21767701 21784211 - 4930538E20Rik antisense antisense MGP_CASTEiJ_T0003028.1 MGP_CASTEiJ_G0002821.1 mouse_genomes_project 11 21774060 21784168 - 4930538E20Rik antisense antisense MGP_CASTEiJ_T0028885.1 MGP_CASTEiJ_G0017729.1 mouse_genomes_project 11 60017395 60077521 + MGP_CASTEiJ_P0028885 Myo15 protein_coding protein_coding MGP_CASTEiJ_T0028886.1 MGP_CASTEiJ_G0017729.1 mouse_genomes_project 11 60017395 60077521 + MGP_CASTEiJ_P0028886 Myo15 protein_coding protein_coding MGP_CASTEiJ_T0028887.1 MGP_CASTEiJ_G0017729.1 mouse_genomes_project 11 60017395 60077521 + MGP_CASTEiJ_P0028887 Myo15 protein_coding protein_coding MGP_CASTEiJ_T0028888.1 MGP_CASTEiJ_G0017729.1 mouse_genomes_project 11 60027850 60057558 + MGP_CASTEiJ_P0028888 Myo15 protein_coding protein_coding MGP_CASTEiJ_T0028889.1 MGP_CASTEiJ_G0017729.1 mouse_genomes_project 11 60057379 60071416 + Myo15 protein_coding retained_intron MGP_CASTEiJ_T0099238.1 MGP_CASTEiJ_G0036151.1 mouse_genomes_project 11 60959861 60959968 + Gm25929 snRNA snRNA MGP_CASTEiJ_T0030002.1 MGP_CASTEiJ_G0017966.1 mouse_genomes_project 11 73652550 73684767 + MGP_CASTEiJ_P0030002 Trpv1 protein_coding protein_coding MGP_CASTEiJ_T0030003.1 MGP_CASTEiJ_G0017966.1 mouse_genomes_project 11 73656502 73684034 + MGP_CASTEiJ_P0030003 Trpv1 protein_coding protein_coding MGP_CASTEiJ_T0030004.1 MGP_CASTEiJ_G0017966.1 mouse_genomes_project 11 73658281 73684770 + MGP_CASTEiJ_P0030004 Trpv1 protein_coding protein_coding MGP_CASTEiJ_T0030005.1 MGP_CASTEiJ_G0017966.1 mouse_genomes_project 11 73658545 73673095 + MGP_CASTEiJ_P0030005 Trpv1 protein_coding protein_coding MGP_CASTEiJ_T0030006.1 MGP_CASTEiJ_G0017966.1 mouse_genomes_project 11 73670581 73672495 + Trpv1 protein_coding processed_transcript MGP_CASTEiJ_T0029019.1 MGP_CASTEiJ_G0017753.1 mouse_genomes_project 11 61284138 61303467 + MGP_CASTEiJ_P0029019 Grap protein_coding protein_coding MGP_CASTEiJ_T0029020.1 MGP_CASTEiJ_G0017753.1 mouse_genomes_project 11 61299732 61300567 + Grap protein_coding processed_transcript MGP_CASTEiJ_T0029831.1 MGP_CASTEiJ_G0017927.1 mouse_genomes_project 11 71205400 71214723 + MGP_CASTEiJ_P0029831 Rpain protein_coding protein_coding MGP_CASTEiJ_T0029832.1 MGP_CASTEiJ_G0017927.1 mouse_genomes_project 11 71205414 71207107 + MGP_CASTEiJ_P0029832 Rpain protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029833.1 MGP_CASTEiJ_G0017927.1 mouse_genomes_project 11 71205667 71211025 + Rpain protein_coding retained_intron MGP_CASTEiJ_T0029834.1 MGP_CASTEiJ_G0017927.1 mouse_genomes_project 11 71205673 71207537 + Rpain protein_coding retained_intron MGP_CASTEiJ_T0029835.1 MGP_CASTEiJ_G0017927.1 mouse_genomes_project 11 71205678 71209192 + Rpain protein_coding retained_intron MGP_CASTEiJ_T0029836.1 MGP_CASTEiJ_G0017927.1 mouse_genomes_project 11 71205694 71214577 + MGP_CASTEiJ_P0029836 Rpain protein_coding protein_coding MGP_CASTEiJ_T0029837.1 MGP_CASTEiJ_G0017927.1 mouse_genomes_project 11 71205694 71214577 + MGP_CASTEiJ_P0029837 Rpain protein_coding protein_coding MGP_CASTEiJ_T0029838.1 MGP_CASTEiJ_G0017927.1 mouse_genomes_project 11 71205694 71214577 + MGP_CASTEiJ_P0029838 Rpain protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029839.1 MGP_CASTEiJ_G0017927.1 mouse_genomes_project 11 71205694 71214577 + MGP_CASTEiJ_P0029839 Rpain protein_coding protein_coding MGP_CASTEiJ_T0029840.1 MGP_CASTEiJ_G0017927.1 mouse_genomes_project 11 71205694 71214577 + MGP_CASTEiJ_P0029840 Rpain protein_coding protein_coding MGP_CASTEiJ_T0029841.1 MGP_CASTEiJ_G0017927.1 mouse_genomes_project 11 71205716 71211292 + Rpain protein_coding retained_intron MGP_CASTEiJ_T0029842.1 MGP_CASTEiJ_G0017927.1 mouse_genomes_project 11 71207990 71214695 + Rpain protein_coding retained_intron MGP_CASTEiJ_T0029843.1 MGP_CASTEiJ_G0017927.1 mouse_genomes_project 11 71211602 71214691 + Rpain protein_coding retained_intron MGP_CASTEiJ_T0003168.1 MGP_CASTEiJ_G0002937.1 mouse_genomes_project 11 98965653 98967123 + Gm11537 antisense antisense MGP_CASTEiJ_T0012381.1 MGP_CASTEiJ_G0010544.1 mouse_genomes_project 11 104037538 104038176 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032922.1 MGP_CASTEiJ_G0018666.1 mouse_genomes_project 11 118617125 118624948 + MGP_CASTEiJ_P0032922 Gpr142 protein_coding protein_coding MGP_CASTEiJ_T0032923.1 MGP_CASTEiJ_G0018666.1 mouse_genomes_project 11 118617125 118624948 + MGP_CASTEiJ_P0032923 Gpr142 protein_coding protein_coding MGP_CASTEiJ_T0033103.1 MGP_CASTEiJ_G0018705.1 mouse_genomes_project 11 119750516 119758302 + MGP_CASTEiJ_P0033103 Tsen54 protein_coding protein_coding MGP_CASTEiJ_T0033104.1 MGP_CASTEiJ_G0018705.1 mouse_genomes_project 11 119750516 119758302 + MGP_CASTEiJ_P0033104 Tsen54 protein_coding protein_coding MGP_CASTEiJ_T0033105.1 MGP_CASTEiJ_G0018705.1 mouse_genomes_project 11 119750538 119751338 + Tsen54 protein_coding retained_intron MGP_CASTEiJ_T0033106.1 MGP_CASTEiJ_G0018705.1 mouse_genomes_project 11 119750563 119755737 + Tsen54 protein_coding retained_intron MGP_CASTEiJ_T0033107.1 MGP_CASTEiJ_G0018705.1 mouse_genomes_project 11 119750597 119755716 + Tsen54 protein_coding retained_intron MGP_CASTEiJ_T0033108.1 MGP_CASTEiJ_G0018705.1 mouse_genomes_project 11 119751490 119756908 + MGP_CASTEiJ_P0033108 Tsen54 protein_coding protein_coding MGP_CASTEiJ_T0033109.1 MGP_CASTEiJ_G0018705.1 mouse_genomes_project 11 119755918 119758297 + MGP_CASTEiJ_P0033109 Tsen54 protein_coding protein_coding MGP_CASTEiJ_T0033110.1 MGP_CASTEiJ_G0018705.1 mouse_genomes_project 11 119756054 119757476 + MGP_CASTEiJ_P0033110 Tsen54 protein_coding protein_coding MGP_CASTEiJ_T0006084.1 MGP_CASTEiJ_G0005095.1 mouse_genomes_project 11 59639733 59642733 - 4930412M03Rik lincRNA lincRNA MGP_CASTEiJ_T0027095.1 MGP_CASTEiJ_G0017286.1 mouse_genomes_project 11 838359 854661 + MGP_CASTEiJ_P0027095 Gal3st1 protein_coding protein_coding MGP_CASTEiJ_T0027096.1 MGP_CASTEiJ_G0017286.1 mouse_genomes_project 11 838436 854650 + MGP_CASTEiJ_P0027096 Gal3st1 protein_coding protein_coding MGP_CASTEiJ_T0027097.1 MGP_CASTEiJ_G0017286.1 mouse_genomes_project 11 845531 854643 + MGP_CASTEiJ_P0027097 Gal3st1 protein_coding protein_coding MGP_CASTEiJ_T0028967.1 MGP_CASTEiJ_G0017746.1 mouse_genomes_project 11 60921654 60969488 - MGP_CASTEiJ_P0028967 Slc47a2 protein_coding protein_coding MGP_CASTEiJ_T0028968.1 MGP_CASTEiJ_G0017746.1 mouse_genomes_project 11 60923949 60969478 - MGP_CASTEiJ_P0028968 Slc47a2 protein_coding protein_coding MGP_CASTEiJ_T0028969.1 MGP_CASTEiJ_G0017746.1 mouse_genomes_project 11 60962000 60969212 - Slc47a2 protein_coding processed_transcript MGP_CASTEiJ_T0012128.1 MGP_CASTEiJ_G0010291.1 mouse_genomes_project 11 3815897 3817019 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031932.1 MGP_CASTEiJ_G0018470.1 mouse_genomes_project 11 103376115 103383568 - Kat2a protein_coding processed_transcript MGP_CASTEiJ_T0031933.1 MGP_CASTEiJ_G0018470.1 mouse_genomes_project 11 103376115 103383844 - Kat2a protein_coding processed_transcript MGP_CASTEiJ_T0031934.1 MGP_CASTEiJ_G0018470.1 mouse_genomes_project 11 103376115 103383860 - MGP_CASTEiJ_P0031934 Kat2a protein_coding protein_coding MGP_CASTEiJ_T0031935.1 MGP_CASTEiJ_G0018470.1 mouse_genomes_project 11 103376115 103383860 - MGP_CASTEiJ_P0031935 Kat2a protein_coding protein_coding MGP_CASTEiJ_T0032465.1 MGP_CASTEiJ_G0018569.1 mouse_genomes_project 11 106478479 106560790 - MGP_CASTEiJ_P0032465 Gm884 protein_coding protein_coding MGP_CASTEiJ_T0027164.1 MGP_CASTEiJ_G0017303.1 mouse_genomes_project 11 1590674 1628799 + MGP_CASTEiJ_P0027164 Zmat5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027165.1 MGP_CASTEiJ_G0017303.1 mouse_genomes_project 11 1590731 1628733 + Zmat5 protein_coding processed_transcript MGP_CASTEiJ_T0027166.1 MGP_CASTEiJ_G0017303.1 mouse_genomes_project 11 1619942 1623882 + Zmat5 protein_coding processed_transcript MGP_CASTEiJ_T0029612.1 MGP_CASTEiJ_G0017886.1 mouse_genomes_project 11 70139022 70144242 - MGP_CASTEiJ_P0029612 Acadvl protein_coding protein_coding MGP_CASTEiJ_T0029613.1 MGP_CASTEiJ_G0017886.1 mouse_genomes_project 11 70139028 70139740 - Acadvl protein_coding retained_intron MGP_CASTEiJ_T0029614.1 MGP_CASTEiJ_G0017886.1 mouse_genomes_project 11 70139083 70144221 - MGP_CASTEiJ_P0029614 Acadvl protein_coding protein_coding MGP_CASTEiJ_T0029615.1 MGP_CASTEiJ_G0017886.1 mouse_genomes_project 11 70140050 70141402 - Acadvl protein_coding retained_intron MGP_CASTEiJ_T0029616.1 MGP_CASTEiJ_G0017886.1 mouse_genomes_project 11 70142016 70144211 - Acadvl protein_coding retained_intron MGP_CASTEiJ_T0029617.1 MGP_CASTEiJ_G0017886.1 mouse_genomes_project 11 70142870 70144245 - Acadvl protein_coding retained_intron MGP_CASTEiJ_T0029618.1 MGP_CASTEiJ_G0017886.1 mouse_genomes_project 11 70142945 70144233 - Acadvl protein_coding retained_intron MGP_CASTEiJ_T0027546.1 MGP_CASTEiJ_G0017385.1 mouse_genomes_project 11 18254933 18262415 - MGP_CASTEiJ_P0027546 Lgalsl protein_coding protein_coding MGP_CASTEiJ_T0027547.1 MGP_CASTEiJ_G0017385.1 mouse_genomes_project 11 18257708 18262114 - Lgalsl protein_coding processed_transcript MGP_CASTEiJ_T0027548.1 MGP_CASTEiJ_G0017385.1 mouse_genomes_project 11 18260460 18262394 - MGP_CASTEiJ_P0027548 Lgalsl protein_coding unknown_likely_coding MGP_CASTEiJ_T0027549.1 MGP_CASTEiJ_G0017385.1 mouse_genomes_project 11 18260671 18262415 - Lgalsl protein_coding processed_transcript MGP_CASTEiJ_T0027550.1 MGP_CASTEiJ_G0017385.1 mouse_genomes_project 11 18261155 18262381 - Lgalsl protein_coding processed_transcript MGP_CASTEiJ_T0033040.1 MGP_CASTEiJ_G0018696.1 mouse_genomes_project 11 119415872 119428604 - MGP_CASTEiJ_P0033040 Sumo2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033041.1 MGP_CASTEiJ_G0018696.1 mouse_genomes_project 11 119422613 119428662 - Sumo2 protein_coding retained_intron MGP_CASTEiJ_T0033042.1 MGP_CASTEiJ_G0018696.1 mouse_genomes_project 11 119426864 119428675 - Sumo2 protein_coding retained_intron MGP_CASTEiJ_T0030952.1 MGP_CASTEiJ_G0018202.1 mouse_genomes_project 11 88117716 88127202 + MGP_CASTEiJ_P0030952 Ptrh2 protein_coding protein_coding MGP_CASTEiJ_T0030953.1 MGP_CASTEiJ_G0018202.1 mouse_genomes_project 11 88117716 88127202 + MGP_CASTEiJ_P0030953 Ptrh2 protein_coding protein_coding MGP_CASTEiJ_T0030885.1 MGP_CASTEiJ_G0018188.1 mouse_genomes_project 11 86503218 86514321 + MGP_CASTEiJ_P0030885 1700125H20Rik protein_coding protein_coding MGP_CASTEiJ_T0030886.1 MGP_CASTEiJ_G0018188.1 mouse_genomes_project 11 86503910 86514321 + MGP_CASTEiJ_P0030886 1700125H20Rik protein_coding protein_coding MGP_CASTEiJ_T0027595.1 MGP_CASTEiJ_G0017395.1 mouse_genomes_project 11 20398664 20547901 - MGP_CASTEiJ_P0027595 Gm28048 protein_coding protein_coding MGP_CASTEiJ_T0012304.1 MGP_CASTEiJ_G0010467.1 mouse_genomes_project 11 71111603 71112079 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033540.1 MGP_CASTEiJ_G0018784.1 mouse_genomes_project 11 123601301 123609356 + Slc26a11 protein_coding processed_transcript MGP_CASTEiJ_T0033541.1 MGP_CASTEiJ_G0018784.1 mouse_genomes_project 11 123601306 123618084 + Slc26a11 protein_coding processed_transcript MGP_CASTEiJ_T0033542.1 MGP_CASTEiJ_G0018784.1 mouse_genomes_project 11 123601329 123632128 + MGP_CASTEiJ_P0033542 Slc26a11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033543.1 MGP_CASTEiJ_G0018784.1 mouse_genomes_project 11 123609749 123632150 + Slc26a11 protein_coding processed_transcript MGP_CASTEiJ_T0030924.1 MGP_CASTEiJ_G0018197.1 mouse_genomes_project 11 87651373 87748325 - MGP_CASTEiJ_P0030924 Med13 protein_coding protein_coding MGP_CASTEiJ_T0030925.1 MGP_CASTEiJ_G0018197.1 mouse_genomes_project 11 87656842 87662884 - Med13 protein_coding processed_transcript MGP_CASTEiJ_T0030926.1 MGP_CASTEiJ_G0018197.1 mouse_genomes_project 11 87659654 87663275 - Med13 protein_coding retained_intron MGP_CASTEiJ_T0030927.1 MGP_CASTEiJ_G0018197.1 mouse_genomes_project 11 87720072 87721250 - Med13 protein_coding retained_intron MGP_CASTEiJ_T0012356.1 MGP_CASTEiJ_G0010519.1 mouse_genomes_project 11 93584204 93585153 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098821.1 MGP_CASTEiJ_G0035750.1 mouse_genomes_project 11 99793957 99796248 - Gm11611 sense_intronic sense_intronic MGP_CASTEiJ_T0029711.1 MGP_CASTEiJ_G0017905.1 mouse_genomes_project 11 70627504 70628426 + MGP_CASTEiJ_P0029711 Zmynd15 protein_coding protein_coding MGP_CASTEiJ_T0029712.1 MGP_CASTEiJ_G0017905.1 mouse_genomes_project 11 70627701 70628460 + MGP_CASTEiJ_P0029712 Zmynd15 protein_coding protein_coding MGP_CASTEiJ_T0029713.1 MGP_CASTEiJ_G0017905.1 mouse_genomes_project 11 70627760 70633759 + Zmynd15 protein_coding retained_intron MGP_CASTEiJ_T0029714.1 MGP_CASTEiJ_G0017905.1 mouse_genomes_project 11 70628128 70633650 + MGP_CASTEiJ_P0029714 Zmynd15 protein_coding protein_coding MGP_CASTEiJ_T0029715.1 MGP_CASTEiJ_G0017905.1 mouse_genomes_project 11 70628133 70633646 + MGP_CASTEiJ_P0029715 Zmynd15 protein_coding protein_coding MGP_CASTEiJ_T0010971.1 MGP_CASTEiJ_G0009159.1 mouse_genomes_project 11 57282678 57282949 + Gm26025 misc_RNA misc_RNA MGP_CASTEiJ_T0029025.1 MGP_CASTEiJ_G0017755.1 mouse_genomes_project 11 61316854 61319622 + Fam83g protein_coding processed_transcript MGP_CASTEiJ_T0029026.1 MGP_CASTEiJ_G0017755.1 mouse_genomes_project 11 61317182 61343053 + MGP_CASTEiJ_P0029026 Fam83g protein_coding protein_coding MGP_CASTEiJ_T0031380.1 MGP_CASTEiJ_G0018301.1 mouse_genomes_project 11 97989708 98041538 - MGP_CASTEiJ_P0031380 B4galnt2 protein_coding protein_coding MGP_CASTEiJ_T0029452.1 MGP_CASTEiJ_G0017851.1 mouse_genomes_project 11 69752091 69753505 + MGP_CASTEiJ_P0029452 Sox15 protein_coding protein_coding MGP_CASTEiJ_T0027158.1 MGP_CASTEiJ_G0017300.1 mouse_genomes_project 11 1503166 1505926 + MGP_CASTEiJ_P0027158 Gm11032 protein_coding protein_coding MGP_CASTEiJ_T0012147.1 MGP_CASTEiJ_G0010310.1 mouse_genomes_project 11 13949943 13950369 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031480.1 MGP_CASTEiJ_G0018328.1 mouse_genomes_project 11 99260551 99264565 + MGP_CASTEiJ_P0031480 Scrn2 protein_coding protein_coding MGP_CASTEiJ_T0031481.1 MGP_CASTEiJ_G0018328.1 mouse_genomes_project 11 99260565 99261824 + Scrn2 protein_coding retained_intron MGP_CASTEiJ_T0031482.1 MGP_CASTEiJ_G0018328.1 mouse_genomes_project 11 99260614 99264557 + Scrn2 protein_coding retained_intron MGP_CASTEiJ_T0031483.1 MGP_CASTEiJ_G0018328.1 mouse_genomes_project 11 99260747 99262884 + MGP_CASTEiJ_P0031483 Scrn2 protein_coding protein_coding MGP_CASTEiJ_T0030017.1 MGP_CASTEiJ_G0017971.1 mouse_genomes_project 11 73805269 73809237 - MGP_CASTEiJ_P0030017 Olfr376 protein_coding protein_coding MGP_CASTEiJ_T0028697.1 MGP_CASTEiJ_G0017679.1 mouse_genomes_project 11 57909491 57915235 - MGP_CASTEiJ_P0028697 protein_coding protein_coding MGP_CASTEiJ_T0028698.1 MGP_CASTEiJ_G0017679.1 mouse_genomes_project 11 57909491 57912115 - MGP_CASTEiJ_P0028698 protein_coding protein_coding MGP_CASTEiJ_T0012424.1 MGP_CASTEiJ_G0010587.1 mouse_genomes_project 11 122056229 122056688 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032150.1 MGP_CASTEiJ_G0018515.1 mouse_genomes_project 11 104425366 104432689 + MGP_CASTEiJ_P0032150 Arl4d protein_coding unknown_likely_coding MGP_CASTEiJ_T0033328.1 MGP_CASTEiJ_G0018744.1 mouse_genomes_project 11 120892262 120898755 + MGP_CASTEiJ_P0033328 Mettl23 protein_coding protein_coding MGP_CASTEiJ_T0033329.1 MGP_CASTEiJ_G0018744.1 mouse_genomes_project 11 120892539 120899374 + Mettl23 protein_coding retained_intron MGP_CASTEiJ_T0033330.1 MGP_CASTEiJ_G0018744.1 mouse_genomes_project 11 120892545 120895124 + Mettl23 protein_coding retained_intron MGP_CASTEiJ_T0033331.1 MGP_CASTEiJ_G0018744.1 mouse_genomes_project 11 120892569 120895046 + Mettl23 protein_coding retained_intron MGP_CASTEiJ_T0033332.1 MGP_CASTEiJ_G0018744.1 mouse_genomes_project 11 120892657 120898644 + Mettl23 protein_coding retained_intron MGP_CASTEiJ_T0033333.1 MGP_CASTEiJ_G0018744.1 mouse_genomes_project 11 120892659 120897358 + MGP_CASTEiJ_P0033333 Mettl23 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033334.1 MGP_CASTEiJ_G0018744.1 mouse_genomes_project 11 120892659 120898060 + MGP_CASTEiJ_P0033334 Mettl23 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033335.1 MGP_CASTEiJ_G0018744.1 mouse_genomes_project 11 120893360 120898761 + MGP_CASTEiJ_P0033335 Mettl23 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033336.1 MGP_CASTEiJ_G0018744.1 mouse_genomes_project 11 120897907 120903263 + MGP_CASTEiJ_P0033336 Mettl23 protein_coding protein_coding MGP_CASTEiJ_T0006126.1 MGP_CASTEiJ_G0005127.1 mouse_genomes_project 11 80905243 80909966 - Gm26563 lincRNA lincRNA MGP_CASTEiJ_T0006127.1 MGP_CASTEiJ_G0005127.1 mouse_genomes_project 11 80906371 80917260 - Gm26563 lincRNA lincRNA MGP_CASTEiJ_T0030054.1 MGP_CASTEiJ_G0017998.1 mouse_genomes_project 11 74798626 74799574 - MGP_CASTEiJ_P0030054 Olfr410 protein_coding protein_coding MGP_CASTEiJ_T0031101.1 MGP_CASTEiJ_G0018236.1 mouse_genomes_project 11 90536069 90575059 - MGP_CASTEiJ_P0031101 Scpep1 protein_coding protein_coding MGP_CASTEiJ_T0031102.1 MGP_CASTEiJ_G0018236.1 mouse_genomes_project 11 90536559 90575006 - MGP_CASTEiJ_P0031102 Scpep1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031103.1 MGP_CASTEiJ_G0018236.1 mouse_genomes_project 11 90536559 90575006 - MGP_CASTEiJ_P0031103 Scpep1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033134.1 MGP_CASTEiJ_G0018708.1 mouse_genomes_project 11 119836590 119839098 - protein_coding retained_intron MGP_CASTEiJ_T0033135.1 MGP_CASTEiJ_G0018708.1 mouse_genomes_project 11 119836590 119882363 - MGP_CASTEiJ_P0033135 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033136.1 MGP_CASTEiJ_G0018708.1 mouse_genomes_project 11 119836912 119882189 - MGP_CASTEiJ_P0033136 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033137.1 MGP_CASTEiJ_G0018708.1 mouse_genomes_project 11 119839377 119876168 - MGP_CASTEiJ_P0033137 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033138.1 MGP_CASTEiJ_G0018708.1 mouse_genomes_project 11 119840232 119882363 - protein_coding retained_intron MGP_CASTEiJ_T0033139.1 MGP_CASTEiJ_G0018708.1 mouse_genomes_project 11 119840776 119851211 - protein_coding processed_transcript MGP_CASTEiJ_T0033144.1 MGP_CASTEiJ_G0018708.1 mouse_genomes_project 11 119860214 119882363 - MGP_CASTEiJ_P0033144 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033145.1 MGP_CASTEiJ_G0018708.1 mouse_genomes_project 11 119874231 119876336 - protein_coding retained_intron MGP_CASTEiJ_T0029539.1 MGP_CASTEiJ_G0017874.1 mouse_genomes_project 11 70018184 70021715 - MGP_CASTEiJ_P0029539 2810408A11Rik protein_coding protein_coding MGP_CASTEiJ_T0029540.1 MGP_CASTEiJ_G0017874.1 mouse_genomes_project 11 70018190 70021707 - MGP_CASTEiJ_P0029540 2810408A11Rik protein_coding protein_coding MGP_CASTEiJ_T0029541.1 MGP_CASTEiJ_G0017874.1 mouse_genomes_project 11 70018195 70021759 - MGP_CASTEiJ_P0029541 2810408A11Rik protein_coding protein_coding MGP_CASTEiJ_T0029542.1 MGP_CASTEiJ_G0017874.1 mouse_genomes_project 11 70018195 70021796 - MGP_CASTEiJ_P0029542 2810408A11Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029543.1 MGP_CASTEiJ_G0017874.1 mouse_genomes_project 11 70018195 70021778 - MGP_CASTEiJ_P0029543 2810408A11Rik protein_coding protein_coding MGP_CASTEiJ_T0029544.1 MGP_CASTEiJ_G0017874.1 mouse_genomes_project 11 70018298 70021808 - 2810408A11Rik protein_coding retained_intron MGP_CASTEiJ_T0029545.1 MGP_CASTEiJ_G0017874.1 mouse_genomes_project 11 70018298 70021778 - MGP_CASTEiJ_P0029545 2810408A11Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029546.1 MGP_CASTEiJ_G0017874.1 mouse_genomes_project 11 70019037 70020475 - 2810408A11Rik protein_coding retained_intron MGP_CASTEiJ_T0029547.1 MGP_CASTEiJ_G0017874.1 mouse_genomes_project 11 70020039 70021760 - MGP_CASTEiJ_P0029547 2810408A11Rik protein_coding protein_coding MGP_CASTEiJ_T0027872.1 MGP_CASTEiJ_G0017452.1 mouse_genomes_project 11 30315305 30402543 + MGP_CASTEiJ_P0027872 Sh3pxd2b protein_coding protein_coding MGP_CASTEiJ_T0027873.1 MGP_CASTEiJ_G0017452.1 mouse_genomes_project 11 30315325 30361304 + Sh3pxd2b protein_coding retained_intron MGP_CASTEiJ_T0027874.1 MGP_CASTEiJ_G0017452.1 mouse_genomes_project 11 30315329 30398032 + MGP_CASTEiJ_P0027874 Sh3pxd2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0027875.1 MGP_CASTEiJ_G0017452.1 mouse_genomes_project 11 30315379 30380363 + MGP_CASTEiJ_P0027875 Sh3pxd2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0027919.1 MGP_CASTEiJ_G0017468.1 mouse_genomes_project 11 32172131 32218597 + MGP_CASTEiJ_P0027919 Lcp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0027920.1 MGP_CASTEiJ_G0017468.1 mouse_genomes_project 11 32173913 32217844 + MGP_CASTEiJ_P0027920 Lcp2 protein_coding protein_coding MGP_CASTEiJ_T0027921.1 MGP_CASTEiJ_G0017468.1 mouse_genomes_project 11 32204887 32205303 + Lcp2 protein_coding processed_transcript MGP_CASTEiJ_T0027922.1 MGP_CASTEiJ_G0017468.1 mouse_genomes_project 11 32214675 32218372 + Lcp2 protein_coding processed_transcript MGP_CASTEiJ_T0009463.1 MGP_CASTEiJ_G0007651.1 mouse_genomes_project 11 75373050 75373118 - Mir6926 miRNA miRNA MGP_CASTEiJ_T0031388.1 MGP_CASTEiJ_G0018304.1 mouse_genomes_project 11 98174768 98187644 + MGP_CASTEiJ_P0031388 Snf8 protein_coding protein_coding MGP_CASTEiJ_T0031389.1 MGP_CASTEiJ_G0018304.1 mouse_genomes_project 11 98174839 98183909 + Snf8 protein_coding processed_transcript MGP_CASTEiJ_T0031390.1 MGP_CASTEiJ_G0018304.1 mouse_genomes_project 11 98174848 98187644 + MGP_CASTEiJ_P0031390 Snf8 protein_coding protein_coding MGP_CASTEiJ_T0031391.1 MGP_CASTEiJ_G0018304.1 mouse_genomes_project 11 98184909 98187644 + Snf8 protein_coding processed_transcript MGP_CASTEiJ_T0031392.1 MGP_CASTEiJ_G0018304.1 mouse_genomes_project 11 98185043 98187534 + Snf8 protein_coding processed_transcript MGP_CASTEiJ_T0016421.1 MGP_CASTEiJ_G0014465.1 mouse_genomes_project 11 3556356 3559238 - Snhg15 processed_transcript processed_transcript MGP_CASTEiJ_T0016422.1 MGP_CASTEiJ_G0014465.1 mouse_genomes_project 11 3556357 3557494 - Snhg15 processed_transcript processed_transcript MGP_CASTEiJ_T0016423.1 MGP_CASTEiJ_G0014465.1 mouse_genomes_project 11 3556390 3558918 - Snhg15 processed_transcript processed_transcript MGP_CASTEiJ_T0016424.1 MGP_CASTEiJ_G0014465.1 mouse_genomes_project 11 3558376 3559224 - Snhg15 processed_transcript processed_transcript MGP_CASTEiJ_T0101993.1 MGP_CASTEiJ_G0038718.1 mouse_genomes_project 11 74567535 74573305 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0033243.1 MGP_CASTEiJ_G0018728.1 mouse_genomes_project 11 120323229 120327969 - MGP_CASTEiJ_P0033243 Foxj1 protein_coding protein_coding MGP_CASTEiJ_T0032979.1 MGP_CASTEiJ_G0018684.1 mouse_genomes_project 11 119189053 119195923 - MGP_CASTEiJ_P0032979 Ush1g protein_coding protein_coding MGP_CASTEiJ_T0012167.1 MGP_CASTEiJ_G0010330.1 mouse_genomes_project 11 18540966 18541260 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029880.1 MGP_CASTEiJ_G0017936.1 mouse_genomes_project 11 72392359 72393724 + MGP_CASTEiJ_P0029880 Fam64a protein_coding protein_coding MGP_CASTEiJ_T0029881.1 MGP_CASTEiJ_G0017936.1 mouse_genomes_project 11 72392782 72397812 + MGP_CASTEiJ_P0029881 Fam64a protein_coding protein_coding MGP_CASTEiJ_T0029882.1 MGP_CASTEiJ_G0017936.1 mouse_genomes_project 11 72392943 72394106 + Fam64a protein_coding processed_transcript MGP_CASTEiJ_T0029883.1 MGP_CASTEiJ_G0017936.1 mouse_genomes_project 11 72392964 72397257 + MGP_CASTEiJ_P0029883 Fam64a protein_coding unknown_likely_coding MGP_CASTEiJ_T0029884.1 MGP_CASTEiJ_G0017936.1 mouse_genomes_project 11 72392965 72396535 + Fam64a protein_coding processed_transcript MGP_CASTEiJ_T0029885.1 MGP_CASTEiJ_G0017936.1 mouse_genomes_project 11 72393363 72395482 + MGP_CASTEiJ_P0029885 Fam64a protein_coding protein_coding MGP_CASTEiJ_T0029886.1 MGP_CASTEiJ_G0017936.1 mouse_genomes_project 11 72393491 72397817 + MGP_CASTEiJ_P0029886 Fam64a protein_coding unknown_likely_coding MGP_CASTEiJ_T0003218.1 MGP_CASTEiJ_G0002980.1 mouse_genomes_project 11 111818347 111822955 - antisense antisense MGP_CASTEiJ_T0031805.1 MGP_CASTEiJ_G0018418.1 mouse_genomes_project 11 102191297 102193194 - MGP_CASTEiJ_P0031805 Krtap4-1 protein_coding protein_coding MGP_CASTEiJ_T0009407.1 MGP_CASTEiJ_G0007595.1 mouse_genomes_project 11 13952204 13952305 - Gm24714 miRNA miRNA MGP_CASTEiJ_T0030740.1 MGP_CASTEiJ_G0018152.1 mouse_genomes_project 11 84441822 84456023 - MGP_CASTEiJ_P0030740 Slfn14 protein_coding protein_coding MGP_CASTEiJ_T0101996.1 MGP_CASTEiJ_G0038721.1 mouse_genomes_project 11 76741202 76741673 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0003232.1 MGP_CASTEiJ_G0002990.1 mouse_genomes_project 11 119873815 119874930 + Recql5os1 antisense antisense MGP_CASTEiJ_T0031732.1 MGP_CASTEiJ_G0018384.1 mouse_genomes_project 11 101336568 101353330 + MGP_CASTEiJ_P0031732 Rapgefl1 protein_coding protein_coding MGP_CASTEiJ_T0031733.1 MGP_CASTEiJ_G0018384.1 mouse_genomes_project 11 101337416 101350929 + MGP_CASTEiJ_P0031733 Rapgefl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031734.1 MGP_CASTEiJ_G0018384.1 mouse_genomes_project 11 101344764 101347049 + Rapgefl1 protein_coding retained_intron MGP_CASTEiJ_T0031735.1 MGP_CASTEiJ_G0018384.1 mouse_genomes_project 11 101350002 101352630 + Rapgefl1 protein_coding retained_intron MGP_CASTEiJ_T0027142.1 MGP_CASTEiJ_G0017297.1 mouse_genomes_project 11 1119975 1137762 + MGP_CASTEiJ_P0027142 Lif protein_coding protein_coding MGP_CASTEiJ_T0027143.1 MGP_CASTEiJ_G0017297.1 mouse_genomes_project 11 1132016 1133469 + Lif protein_coding processed_transcript MGP_CASTEiJ_T0027144.1 MGP_CASTEiJ_G0017297.1 mouse_genomes_project 11 1132315 1137762 + MGP_CASTEiJ_P0027144 Lif protein_coding protein_coding MGP_CASTEiJ_T0032850.1 MGP_CASTEiJ_G0018651.1 mouse_genomes_project 11 114545311 114556213 + MGP_CASTEiJ_P0032850 Kcnj2 protein_coding protein_coding MGP_CASTEiJ_T0028097.1 MGP_CASTEiJ_G0017514.1 mouse_genomes_project 11 45119617 45134439 + MGP_CASTEiJ_P0028097 Gm12169 protein_coding protein_coding MGP_CASTEiJ_T0033064.1 MGP_CASTEiJ_G0018699.1 mouse_genomes_project 11 119508941 119513040 + MGP_CASTEiJ_P0033064 Mrps7 protein_coding protein_coding MGP_CASTEiJ_T0033065.1 MGP_CASTEiJ_G0018699.1 mouse_genomes_project 11 119509883 119512017 + Mrps7 protein_coding processed_transcript MGP_CASTEiJ_T0027383.1 MGP_CASTEiJ_G0017346.1 mouse_genomes_project 11 3695101 3716585 + MGP_CASTEiJ_P0027383 Ramp3 protein_coding protein_coding MGP_CASTEiJ_T0027384.1 MGP_CASTEiJ_G0017346.1 mouse_genomes_project 11 3695145 3716582 + Ramp3 protein_coding processed_transcript MGP_CASTEiJ_T0027385.1 MGP_CASTEiJ_G0017346.1 mouse_genomes_project 11 3700469 3715942 + MGP_CASTEiJ_P0027385 Ramp3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030501.1 MGP_CASTEiJ_G0018087.1 mouse_genomes_project 11 79242927 79249188 + MGP_CASTEiJ_P0030501 Slc46a1 protein_coding protein_coding MGP_CASTEiJ_T0030502.1 MGP_CASTEiJ_G0018087.1 mouse_genomes_project 11 79242980 79248866 + MGP_CASTEiJ_P0030502 Slc46a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030503.1 MGP_CASTEiJ_G0018087.1 mouse_genomes_project 11 79247471 79249302 + Slc46a1 protein_coding retained_intron MGP_CASTEiJ_T0003041.1 MGP_CASTEiJ_G0002834.1 mouse_genomes_project 11 43188174 43191320 - Gm12158 antisense antisense MGP_CASTEiJ_T0030192.1 MGP_CASTEiJ_G0018027.1 mouse_genomes_project 11 76208985 76232878 + MGP_CASTEiJ_P0030192 Myo1c protein_coding protein_coding MGP_CASTEiJ_T0030193.1 MGP_CASTEiJ_G0018027.1 mouse_genomes_project 11 76214713 76228554 + Myo1c protein_coding retained_intron MGP_CASTEiJ_T0030194.1 MGP_CASTEiJ_G0018027.1 mouse_genomes_project 11 76214717 76231660 + MGP_CASTEiJ_P0030194 Myo1c protein_coding protein_coding MGP_CASTEiJ_T0030195.1 MGP_CASTEiJ_G0018027.1 mouse_genomes_project 11 76214762 76216213 + MGP_CASTEiJ_P0030195 Myo1c protein_coding protein_coding MGP_CASTEiJ_T0030196.1 MGP_CASTEiJ_G0018027.1 mouse_genomes_project 11 76220310 76224894 + Myo1c protein_coding retained_intron MGP_CASTEiJ_T0030197.1 MGP_CASTEiJ_G0018027.1 mouse_genomes_project 11 76224376 76228213 + Myo1c protein_coding retained_intron MGP_CASTEiJ_T0030198.1 MGP_CASTEiJ_G0018027.1 mouse_genomes_project 11 76227064 76229222 + Myo1c protein_coding retained_intron MGP_CASTEiJ_T0030199.1 MGP_CASTEiJ_G0018027.1 mouse_genomes_project 11 76229243 76230695 + Myo1c protein_coding retained_intron MGP_CASTEiJ_T0100479.1 MGP_CASTEiJ_G0037392.1 mouse_genomes_project 11 109627540 109627671 + Gm22711 snoRNA snoRNA MGP_CASTEiJ_T0003107.1 MGP_CASTEiJ_G0002890.1 mouse_genomes_project 11 69105757 69108551 - 9330160F10Rik antisense antisense MGP_CASTEiJ_T0029561.1 MGP_CASTEiJ_G0017876.1 mouse_genomes_project 11 70034716 70037409 + MGP_CASTEiJ_P0029561 Gps2 protein_coding protein_coding MGP_CASTEiJ_T0029562.1 MGP_CASTEiJ_G0017876.1 mouse_genomes_project 11 70034878 70037423 + MGP_CASTEiJ_P0029562 Gps2 protein_coding protein_coding MGP_CASTEiJ_T0029563.1 MGP_CASTEiJ_G0017876.1 mouse_genomes_project 11 70035021 70037424 + MGP_CASTEiJ_P0029563 Gps2 protein_coding protein_coding MGP_CASTEiJ_T0029564.1 MGP_CASTEiJ_G0017876.1 mouse_genomes_project 11 70035674 70036713 + Gps2 protein_coding processed_transcript MGP_CASTEiJ_T0029565.1 MGP_CASTEiJ_G0017876.1 mouse_genomes_project 11 70036873 70037389 + MGP_CASTEiJ_P0029565 Gps2 protein_coding protein_coding MGP_CASTEiJ_T0012420.1 MGP_CASTEiJ_G0010583.1 mouse_genomes_project 11 120381875 120382294 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030026.1 MGP_CASTEiJ_G0017979.1 mouse_genomes_project 11 74144068 74159801 + protein_coding processed_transcript MGP_CASTEiJ_T0032085.1 MGP_CASTEiJ_G0018504.1 mouse_genomes_project 11 104145714 104158393 - MGP_CASTEiJ_P0032085 Aarsd1 protein_coding protein_coding MGP_CASTEiJ_T0032086.1 MGP_CASTEiJ_G0018504.1 mouse_genomes_project 11 104149630 104158162 - Aarsd1 protein_coding processed_transcript MGP_CASTEiJ_T0032087.1 MGP_CASTEiJ_G0018504.1 mouse_genomes_project 11 104150231 104158160 - Aarsd1 protein_coding retained_intron MGP_CASTEiJ_T0032088.1 MGP_CASTEiJ_G0018504.1 mouse_genomes_project 11 104153991 104154813 - Aarsd1 protein_coding retained_intron MGP_CASTEiJ_T0032089.1 MGP_CASTEiJ_G0018504.1 mouse_genomes_project 11 104157525 104158184 - Aarsd1 protein_coding retained_intron MGP_CASTEiJ_T0029382.1 MGP_CASTEiJ_G0017834.1 mouse_genomes_project 11 69362861 69363864 - Cntrob protein_coding retained_intron MGP_CASTEiJ_T0029383.1 MGP_CASTEiJ_G0017834.1 mouse_genomes_project 11 69362861 69387038 - MGP_CASTEiJ_P0029383 Cntrob protein_coding protein_coding MGP_CASTEiJ_T0029384.1 MGP_CASTEiJ_G0017834.1 mouse_genomes_project 11 69362861 69387038 - MGP_CASTEiJ_P0029384 Cntrob protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029385.1 MGP_CASTEiJ_G0017834.1 mouse_genomes_project 11 69362914 69382679 - MGP_CASTEiJ_P0029385 Cntrob protein_coding protein_coding MGP_CASTEiJ_T0029386.1 MGP_CASTEiJ_G0017834.1 mouse_genomes_project 11 69363074 69366573 - MGP_CASTEiJ_P0029386 Cntrob protein_coding protein_coding MGP_CASTEiJ_T0029387.1 MGP_CASTEiJ_G0017834.1 mouse_genomes_project 11 69364932 69368418 - Cntrob protein_coding retained_intron MGP_CASTEiJ_T0029388.1 MGP_CASTEiJ_G0017834.1 mouse_genomes_project 11 69371847 69372895 - MGP_CASTEiJ_P0029388 Cntrob protein_coding protein_coding MGP_CASTEiJ_T0029389.1 MGP_CASTEiJ_G0017834.1 mouse_genomes_project 11 69373498 69378545 - Cntrob protein_coding retained_intron MGP_CASTEiJ_T0029390.1 MGP_CASTEiJ_G0017834.1 mouse_genomes_project 11 69378203 69383324 - Cntrob protein_coding retained_intron MGP_CASTEiJ_T0029391.1 MGP_CASTEiJ_G0017834.1 mouse_genomes_project 11 69378599 69382697 - Cntrob protein_coding retained_intron MGP_CASTEiJ_T0006205.1 MGP_CASTEiJ_G0005183.1 mouse_genomes_project 11 121131048 121132851 + Gm11731 lincRNA lincRNA MGP_CASTEiJ_T0028618.1 MGP_CASTEiJ_G0017648.1 mouse_genomes_project 11 54657027 54677524 + G3bp1 protein_coding processed_transcript MGP_CASTEiJ_T0028619.1 MGP_CASTEiJ_G0017648.1 mouse_genomes_project 11 54657045 54686299 + MGP_CASTEiJ_P0028619 G3bp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006022.1 MGP_CASTEiJ_G0005042.1 mouse_genomes_project 11 20134035 20145835 - Gm26829 lincRNA lincRNA MGP_CASTEiJ_T0009462.1 MGP_CASTEiJ_G0007650.1 mouse_genomes_project 11 73352588 73352675 + Gm44467 miRNA miRNA MGP_CASTEiJ_T0006080.1 MGP_CASTEiJ_G0005091.1 mouse_genomes_project 11 57283580 57288381 - lincRNA lincRNA MGP_CASTEiJ_T0028374.1 MGP_CASTEiJ_G0017589.1 mouse_genomes_project 11 50583614 50586864 - MGP_CASTEiJ_P0028374 0610009B22Rik protein_coding protein_coding MGP_CASTEiJ_T0028375.1 MGP_CASTEiJ_G0017589.1 mouse_genomes_project 11 50583614 50587085 - MGP_CASTEiJ_P0028375 0610009B22Rik protein_coding protein_coding MGP_CASTEiJ_T0031561.1 MGP_CASTEiJ_G0018346.1 mouse_genomes_project 11 99993130 100003428 + MGP_CASTEiJ_P0031561 Psmb3 protein_coding protein_coding MGP_CASTEiJ_T0031562.1 MGP_CASTEiJ_G0018346.1 mouse_genomes_project 11 99993146 100003436 + MGP_CASTEiJ_P0031562 Psmb3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031563.1 MGP_CASTEiJ_G0018346.1 mouse_genomes_project 11 99993165 99997838 + Psmb3 protein_coding retained_intron MGP_CASTEiJ_T0031564.1 MGP_CASTEiJ_G0018346.1 mouse_genomes_project 11 100002001 100003428 + Psmb3 protein_coding retained_intron MGP_CASTEiJ_T0006065.1 MGP_CASTEiJ_G0005079.1 mouse_genomes_project 11 43726414 43783072 + Gm12160 lincRNA lincRNA MGP_CASTEiJ_T0012333.1 MGP_CASTEiJ_G0010496.1 mouse_genomes_project 11 82012623 82014601 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0030285.1 MGP_CASTEiJ_G0018048.1 mouse_genomes_project 11 77569615 77570645 + Blmh protein_coding retained_intron MGP_CASTEiJ_T0030286.1 MGP_CASTEiJ_G0018048.1 mouse_genomes_project 11 77569625 77596432 + Blmh protein_coding retained_intron MGP_CASTEiJ_T0030287.1 MGP_CASTEiJ_G0018048.1 mouse_genomes_project 11 77569707 77595449 + MGP_CASTEiJ_P0030287 Blmh protein_coding protein_coding MGP_CASTEiJ_T0030288.1 MGP_CASTEiJ_G0018048.1 mouse_genomes_project 11 77569737 77617021 + MGP_CASTEiJ_P0030288 Blmh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030289.1 MGP_CASTEiJ_G0018048.1 mouse_genomes_project 11 77569767 77617576 + MGP_CASTEiJ_P0030289 Blmh protein_coding protein_coding MGP_CASTEiJ_T0030290.1 MGP_CASTEiJ_G0018048.1 mouse_genomes_project 11 77569933 77583154 + MGP_CASTEiJ_P0030290 Blmh protein_coding protein_coding MGP_CASTEiJ_T0030291.1 MGP_CASTEiJ_G0018048.1 mouse_genomes_project 11 77569954 77579521 + MGP_CASTEiJ_P0030291 Blmh protein_coding protein_coding MGP_CASTEiJ_T0030292.1 MGP_CASTEiJ_G0018048.1 mouse_genomes_project 11 77589878 77594485 + Blmh protein_coding processed_transcript MGP_CASTEiJ_T0033221.1 MGP_CASTEiJ_G0018723.1 mouse_genomes_project 11 120177744 120195652 + MGP_CASTEiJ_P0033221 Ten1 protein_coding protein_coding MGP_CASTEiJ_T0033222.1 MGP_CASTEiJ_G0018723.1 mouse_genomes_project 11 120177787 120186965 + Ten1 protein_coding retained_intron MGP_CASTEiJ_T0033223.1 MGP_CASTEiJ_G0018723.1 mouse_genomes_project 11 120177848 120195582 + Ten1 protein_coding processed_transcript MGP_CASTEiJ_T0033224.1 MGP_CASTEiJ_G0018723.1 mouse_genomes_project 11 120191219 120195582 + Ten1 protein_coding processed_transcript MGP_CASTEiJ_T0032816.1 MGP_CASTEiJ_G0018644.1 mouse_genomes_project 11 113319197 113397208 - MGP_CASTEiJ_P0032816 Abca8b protein_coding protein_coding MGP_CASTEiJ_T0032817.1 MGP_CASTEiJ_G0018644.1 mouse_genomes_project 11 113322837 113397179 - MGP_CASTEiJ_P0032817 Abca8b protein_coding unknown_likely_coding MGP_CASTEiJ_T0032818.1 MGP_CASTEiJ_G0018644.1 mouse_genomes_project 11 113322848 113397106 - MGP_CASTEiJ_P0032818 Abca8b protein_coding protein_coding MGP_CASTEiJ_T0030617.1 MGP_CASTEiJ_G0018118.1 mouse_genomes_project 11 81117294 81180443 + MGP_CASTEiJ_P0030617 Rhot1 protein_coding protein_coding MGP_CASTEiJ_T0030618.1 MGP_CASTEiJ_G0018118.1 mouse_genomes_project 11 81117330 81181538 + MGP_CASTEiJ_P0030618 Rhot1 protein_coding protein_coding MGP_CASTEiJ_T0030619.1 MGP_CASTEiJ_G0018118.1 mouse_genomes_project 11 81117359 81181117 + MGP_CASTEiJ_P0030619 Rhot1 protein_coding protein_coding MGP_CASTEiJ_T0030620.1 MGP_CASTEiJ_G0018118.1 mouse_genomes_project 11 81117388 81164646 + Rhot1 protein_coding retained_intron MGP_CASTEiJ_T0030621.1 MGP_CASTEiJ_G0018118.1 mouse_genomes_project 11 81117394 81180398 + MGP_CASTEiJ_P0030621 Rhot1 protein_coding protein_coding MGP_CASTEiJ_T0030622.1 MGP_CASTEiJ_G0018118.1 mouse_genomes_project 11 81117422 81159016 + Rhot1 protein_coding retained_intron MGP_CASTEiJ_T0030623.1 MGP_CASTEiJ_G0018118.1 mouse_genomes_project 11 81117523 81179714 + MGP_CASTEiJ_P0030623 Rhot1 protein_coding protein_coding MGP_CASTEiJ_T0030624.1 MGP_CASTEiJ_G0018118.1 mouse_genomes_project 11 81162293 81180369 + Rhot1 protein_coding processed_transcript MGP_CASTEiJ_T0030625.1 MGP_CASTEiJ_G0018118.1 mouse_genomes_project 11 81165096 81168507 + Rhot1 protein_coding retained_intron MGP_CASTEiJ_T0099279.1 MGP_CASTEiJ_G0036192.1 mouse_genomes_project 11 105403481 105403585 - Gm25337 snRNA snRNA MGP_CASTEiJ_T0012299.1 MGP_CASTEiJ_G0010462.1 mouse_genomes_project 11 70519531 70520172 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0032474.1 MGP_CASTEiJ_G0018574.1 mouse_genomes_project 11 106704053 106778520 + MGP_CASTEiJ_P0032474 Wnt3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032475.1 MGP_CASTEiJ_G0018574.1 mouse_genomes_project 11 106736152 106781804 + MGP_CASTEiJ_P0032475 Wnt3 protein_coding protein_coding MGP_CASTEiJ_T0032476.1 MGP_CASTEiJ_G0018574.1 mouse_genomes_project 11 106773639 106778520 + MGP_CASTEiJ_P0032476 Wnt3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033729.1 MGP_CASTEiJ_G0018819.1 mouse_genomes_project 11 124961332 124967944 - Sirt7 protein_coding retained_intron MGP_CASTEiJ_T0033730.1 MGP_CASTEiJ_G0018819.1 mouse_genomes_project 11 124961332 124968215 - Sirt7 protein_coding retained_intron MGP_CASTEiJ_T0033731.1 MGP_CASTEiJ_G0018819.1 mouse_genomes_project 11 124961332 124967989 - MGP_CASTEiJ_P0033731 Sirt7 protein_coding protein_coding MGP_CASTEiJ_T0033732.1 MGP_CASTEiJ_G0018819.1 mouse_genomes_project 11 124961334 124967974 - Sirt7 protein_coding retained_intron MGP_CASTEiJ_T0033733.1 MGP_CASTEiJ_G0018819.1 mouse_genomes_project 11 124961348 124967995 - Sirt7 protein_coding retained_intron MGP_CASTEiJ_T0033734.1 MGP_CASTEiJ_G0018819.1 mouse_genomes_project 11 124961376 124963934 - MGP_CASTEiJ_P0033734 Sirt7 protein_coding protein_coding MGP_CASTEiJ_T0033735.1 MGP_CASTEiJ_G0018819.1 mouse_genomes_project 11 124961725 124962326 - Sirt7 protein_coding processed_transcript MGP_CASTEiJ_T0033736.1 MGP_CASTEiJ_G0018819.1 mouse_genomes_project 11 124963955 124967965 - Sirt7 protein_coding processed_transcript MGP_CASTEiJ_T0033737.1 MGP_CASTEiJ_G0018819.1 mouse_genomes_project 11 124964955 124965802 - Sirt7 protein_coding retained_intron MGP_CASTEiJ_T0033738.1 MGP_CASTEiJ_G0018819.1 mouse_genomes_project 11 124966279 124967967 - Sirt7 protein_coding retained_intron MGP_CASTEiJ_T0033739.1 MGP_CASTEiJ_G0018819.1 mouse_genomes_project 11 124966992 124967959 - MGP_CASTEiJ_P0033739 Sirt7 protein_coding protein_coding MGP_CASTEiJ_T0100462.1 MGP_CASTEiJ_G0037375.1 mouse_genomes_project 11 78925174 78925243 - Snord42b snoRNA snoRNA MGP_CASTEiJ_T0031949.1 MGP_CASTEiJ_G0018476.1 mouse_genomes_project 11 103465449 103538486 - MGP_CASTEiJ_P0031949 Stat5b protein_coding protein_coding MGP_CASTEiJ_T0031950.1 MGP_CASTEiJ_G0018476.1 mouse_genomes_project 11 103465449 103538486 - MGP_CASTEiJ_P0031950 Stat5b protein_coding unknown_likely_coding MGP_CASTEiJ_T0031951.1 MGP_CASTEiJ_G0018476.1 mouse_genomes_project 11 103483889 103538567 - Stat5b protein_coding processed_transcript MGP_CASTEiJ_T0016436.1 MGP_CASTEiJ_G0014470.1 mouse_genomes_project 11 18832240 18836755 + Gm12043 processed_transcript processed_transcript MGP_CASTEiJ_T0033548.1 MGP_CASTEiJ_G0018786.1 mouse_genomes_project 11 123755378 123775162 + MGP_CASTEiJ_P0033548 Endov protein_coding protein_coding MGP_CASTEiJ_T0033549.1 MGP_CASTEiJ_G0018786.1 mouse_genomes_project 11 123755403 123783005 + MGP_CASTEiJ_P0033549 Endov protein_coding protein_coding MGP_CASTEiJ_T0033550.1 MGP_CASTEiJ_G0018786.1 mouse_genomes_project 11 123755405 123771419 + MGP_CASTEiJ_P0033550 Endov protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033551.1 MGP_CASTEiJ_G0018786.1 mouse_genomes_project 11 123755406 123773332 + MGP_CASTEiJ_P0033551 Endov protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033552.1 MGP_CASTEiJ_G0018786.1 mouse_genomes_project 11 123755457 123771107 + MGP_CASTEiJ_P0033552 Endov protein_coding protein_coding MGP_CASTEiJ_T0033553.1 MGP_CASTEiJ_G0018786.1 mouse_genomes_project 11 123755582 123769205 + MGP_CASTEiJ_P0033553 Endov protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033554.1 MGP_CASTEiJ_G0018786.1 mouse_genomes_project 11 123755707 123764885 + Endov protein_coding retained_intron MGP_CASTEiJ_T0033555.1 MGP_CASTEiJ_G0018786.1 mouse_genomes_project 11 123755816 123766911 + Endov protein_coding processed_transcript MGP_CASTEiJ_T0033556.1 MGP_CASTEiJ_G0018786.1 mouse_genomes_project 11 123763574 123769880 + MGP_CASTEiJ_P0033556 Endov protein_coding protein_coding MGP_CASTEiJ_T0033557.1 MGP_CASTEiJ_G0018786.1 mouse_genomes_project 11 123766060 123771117 + Endov protein_coding retained_intron MGP_CASTEiJ_T0029303.1 MGP_CASTEiJ_G0017817.1 mouse_genomes_project 11 68956642 68964142 - MGP_CASTEiJ_P0029303 Odf4 protein_coding protein_coding MGP_CASTEiJ_T0029304.1 MGP_CASTEiJ_G0017817.1 mouse_genomes_project 11 68956643 68964174 - MGP_CASTEiJ_P0029304 Odf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029305.1 MGP_CASTEiJ_G0017817.1 mouse_genomes_project 11 68956770 68963909 - MGP_CASTEiJ_P0029305 Odf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029306.1 MGP_CASTEiJ_G0017817.1 mouse_genomes_project 11 68957643 68964167 - MGP_CASTEiJ_P0029306 Odf4 protein_coding protein_coding MGP_CASTEiJ_T0006203.1 MGP_CASTEiJ_G0005182.1 mouse_genomes_project 11 121105406 121110254 - Gm11728 lincRNA lincRNA MGP_CASTEiJ_T0006204.1 MGP_CASTEiJ_G0005182.1 mouse_genomes_project 11 121108587 121110249 - Gm11728 lincRNA lincRNA MGP_CASTEiJ_T0033644.1 MGP_CASTEiJ_G0018801.1 mouse_genomes_project 11 124685937 124747632 - MGP_CASTEiJ_P0033644 Nploc4 protein_coding protein_coding MGP_CASTEiJ_T0033645.1 MGP_CASTEiJ_G0018801.1 mouse_genomes_project 11 124685937 124747632 - MGP_CASTEiJ_P0033645 Nploc4 protein_coding protein_coding MGP_CASTEiJ_T0033646.1 MGP_CASTEiJ_G0018801.1 mouse_genomes_project 11 124687894 124689079 - Nploc4 protein_coding processed_transcript MGP_CASTEiJ_T0033647.1 MGP_CASTEiJ_G0018801.1 mouse_genomes_project 11 124710137 124729351 - Nploc4 protein_coding processed_transcript MGP_CASTEiJ_T0033648.1 MGP_CASTEiJ_G0018801.1 mouse_genomes_project 11 124719522 124724096 - Nploc4 protein_coding processed_transcript MGP_CASTEiJ_T0029108.1 MGP_CASTEiJ_G0017768.1 mouse_genomes_project 11 62369915 62391229 + MGP_CASTEiJ_P0029108 protein_coding protein_coding MGP_CASTEiJ_T0029109.1 MGP_CASTEiJ_G0017768.1 mouse_genomes_project 11 62370047 62392267 + MGP_CASTEiJ_P0029109 protein_coding unknown_likely_coding MGP_CASTEiJ_T0029110.1 MGP_CASTEiJ_G0017768.1 mouse_genomes_project 11 62370064 62387359 + protein_coding retained_intron MGP_CASTEiJ_T0029111.1 MGP_CASTEiJ_G0017768.1 mouse_genomes_project 11 62370068 62391159 + protein_coding processed_transcript MGP_CASTEiJ_T0029112.1 MGP_CASTEiJ_G0017768.1 mouse_genomes_project 11 62370071 62391091 + protein_coding processed_transcript MGP_CASTEiJ_T0029113.1 MGP_CASTEiJ_G0017768.1 mouse_genomes_project 11 62370082 62391299 + MGP_CASTEiJ_P0029113 protein_coding protein_coding MGP_CASTEiJ_T0027912.1 MGP_CASTEiJ_G0017465.1 mouse_genomes_project 11 31683975 31713837 + MGP_CASTEiJ_P0027912 D130052B06Rik protein_coding protein_coding MGP_CASTEiJ_T0030831.1 MGP_CASTEiJ_G0018178.1 mouse_genomes_project 11 85703628 85795425 - MGP_CASTEiJ_P0030831 Aatf protein_coding protein_coding MGP_CASTEiJ_T0030832.1 MGP_CASTEiJ_G0018178.1 mouse_genomes_project 11 85703656 85772343 - Aatf protein_coding processed_transcript MGP_CASTEiJ_T0030833.1 MGP_CASTEiJ_G0018178.1 mouse_genomes_project 11 85723169 85730261 - Aatf protein_coding retained_intron MGP_CASTEiJ_T0030834.1 MGP_CASTEiJ_G0018178.1 mouse_genomes_project 11 85747615 85795425 - Aatf protein_coding retained_intron MGP_CASTEiJ_T0033424.1 MGP_CASTEiJ_G0018762.1 mouse_genomes_project 11 122103874 122109822 - MGP_CASTEiJ_P0033424 Socs3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033425.1 MGP_CASTEiJ_G0018762.1 mouse_genomes_project 11 122106891 122110002 - MGP_CASTEiJ_P0033425 Socs3 protein_coding protein_coding MGP_CASTEiJ_T0033426.1 MGP_CASTEiJ_G0018762.1 mouse_genomes_project 11 122109692 122110862 - Socs3 protein_coding processed_transcript MGP_CASTEiJ_T0033427.1 MGP_CASTEiJ_G0018762.1 mouse_genomes_project 11 122109751 122110267 - Socs3 protein_coding processed_transcript MGP_CASTEiJ_T0027227.1 MGP_CASTEiJ_G0017313.1 mouse_genomes_project 11 2017689 2024861 + MGP_CASTEiJ_P0027227 Rhbdd3 protein_coding protein_coding MGP_CASTEiJ_T0027228.1 MGP_CASTEiJ_G0017313.1 mouse_genomes_project 11 2017840 2019343 + Rhbdd3 protein_coding processed_transcript MGP_CASTEiJ_T0027229.1 MGP_CASTEiJ_G0017313.1 mouse_genomes_project 11 2018036 2019263 + Rhbdd3 protein_coding processed_transcript MGP_CASTEiJ_T0027230.1 MGP_CASTEiJ_G0017313.1 mouse_genomes_project 11 2018196 2022120 + MGP_CASTEiJ_P0027230 Rhbdd3 protein_coding protein_coding MGP_CASTEiJ_T0027231.1 MGP_CASTEiJ_G0017313.1 mouse_genomes_project 11 2018202 2024861 + MGP_CASTEiJ_P0027231 Rhbdd3 protein_coding protein_coding MGP_CASTEiJ_T0027232.1 MGP_CASTEiJ_G0017313.1 mouse_genomes_project 11 2018239 2022025 + MGP_CASTEiJ_P0027232 Rhbdd3 protein_coding protein_coding MGP_CASTEiJ_T0027233.1 MGP_CASTEiJ_G0017313.1 mouse_genomes_project 11 2018371 2022031 + MGP_CASTEiJ_P0027233 Rhbdd3 protein_coding protein_coding MGP_CASTEiJ_T0027234.1 MGP_CASTEiJ_G0017313.1 mouse_genomes_project 11 2018914 2024861 + MGP_CASTEiJ_P0027234 Rhbdd3 protein_coding protein_coding MGP_CASTEiJ_T0027235.1 MGP_CASTEiJ_G0017313.1 mouse_genomes_project 11 2018927 2023998 + MGP_CASTEiJ_P0027235 Rhbdd3 protein_coding protein_coding MGP_CASTEiJ_T0027236.1 MGP_CASTEiJ_G0017313.1 mouse_genomes_project 11 2018994 2024863 + Rhbdd3 protein_coding processed_transcript MGP_CASTEiJ_T0030057.1 MGP_CASTEiJ_G0018000.1 mouse_genomes_project 11 74831397 74832392 + MGP_CASTEiJ_P0030057 Olfr412 protein_coding protein_coding MGP_CASTEiJ_T0031354.1 MGP_CASTEiJ_G0018293.1 mouse_genomes_project 11 97604888 97609367 - MGP_CASTEiJ_P0031354 Nxph3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100439.1 MGP_CASTEiJ_G0037352.1 mouse_genomes_project 11 55503260 55503326 - Gm24253 snoRNA snoRNA MGP_CASTEiJ_T0027639.1 MGP_CASTEiJ_G0017403.1 mouse_genomes_project 11 21061552 21070932 - MGP_CASTEiJ_P0027639 Ahsa2 protein_coding protein_coding MGP_CASTEiJ_T0027640.1 MGP_CASTEiJ_G0017403.1 mouse_genomes_project 11 21062587 21065311 - Ahsa2 protein_coding processed_transcript MGP_CASTEiJ_T0027641.1 MGP_CASTEiJ_G0017403.1 mouse_genomes_project 11 21062731 21071248 - MGP_CASTEiJ_P0027641 Ahsa2 protein_coding protein_coding MGP_CASTEiJ_T0027642.1 MGP_CASTEiJ_G0017403.1 mouse_genomes_project 11 21063325 21064429 - Ahsa2 protein_coding processed_transcript MGP_CASTEiJ_T0027643.1 MGP_CASTEiJ_G0017403.1 mouse_genomes_project 11 21063431 21064082 - Ahsa2 protein_coding processed_transcript MGP_CASTEiJ_T0027644.1 MGP_CASTEiJ_G0017403.1 mouse_genomes_project 11 21064113 21071299 - MGP_CASTEiJ_P0027644 Ahsa2 protein_coding protein_coding MGP_CASTEiJ_T0027645.1 MGP_CASTEiJ_G0017403.1 mouse_genomes_project 11 21066167 21071289 - MGP_CASTEiJ_P0027645 Ahsa2 protein_coding protein_coding MGP_CASTEiJ_T0099247.1 MGP_CASTEiJ_G0036160.1 mouse_genomes_project 11 74215988 74216095 + Gm22381 snRNA snRNA MGP_CASTEiJ_T0032529.1 MGP_CASTEiJ_G0018585.1 mouse_genomes_project 11 107964538 108174498 + MGP_CASTEiJ_P0032529 Efcab3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0032530.1 MGP_CASTEiJ_G0018585.1 mouse_genomes_project 11 108121707 108149401 + MGP_CASTEiJ_P0032530 Efcab3 protein_coding protein_coding MGP_CASTEiJ_T0032531.1 MGP_CASTEiJ_G0018585.1 mouse_genomes_project 11 108124750 108164343 + MGP_CASTEiJ_P0032531 Efcab3 protein_coding protein_coding MGP_CASTEiJ_T0032532.1 MGP_CASTEiJ_G0018585.1 mouse_genomes_project 11 108150760 108174641 + MGP_CASTEiJ_P0032532 Efcab3 protein_coding protein_coding MGP_CASTEiJ_T0032533.1 MGP_CASTEiJ_G0018585.1 mouse_genomes_project 11 108170662 108174639 + Efcab3 protein_coding processed_transcript MGP_CASTEiJ_T0028960.1 MGP_CASTEiJ_G0017745.1 mouse_genomes_project 11 60840642 60884848 - MGP_CASTEiJ_P0028960 Aldh3a2 protein_coding protein_coding MGP_CASTEiJ_T0028961.1 MGP_CASTEiJ_G0017745.1 mouse_genomes_project 11 60863192 60884848 - MGP_CASTEiJ_P0028961 Aldh3a2 protein_coding protein_coding MGP_CASTEiJ_T0028962.1 MGP_CASTEiJ_G0017745.1 mouse_genomes_project 11 60865675 60884848 - MGP_CASTEiJ_P0028962 Aldh3a2 protein_coding protein_coding MGP_CASTEiJ_T0028963.1 MGP_CASTEiJ_G0017745.1 mouse_genomes_project 11 60867235 60879985 - Aldh3a2 protein_coding processed_transcript MGP_CASTEiJ_T0028964.1 MGP_CASTEiJ_G0017745.1 mouse_genomes_project 11 60875088 60885127 - Aldh3a2 protein_coding processed_transcript MGP_CASTEiJ_T0028965.1 MGP_CASTEiJ_G0017745.1 mouse_genomes_project 11 60881830 60884790 - Aldh3a2 protein_coding processed_transcript MGP_CASTEiJ_T0028966.1 MGP_CASTEiJ_G0017745.1 mouse_genomes_project 11 60882884 60885104 - Aldh3a2 protein_coding processed_transcript MGP_CASTEiJ_T0003180.1 MGP_CASTEiJ_G0002947.1 mouse_genomes_project 11 101968146 101968957 + A830036E02Rik antisense antisense MGP_CASTEiJ_T0003181.1 MGP_CASTEiJ_G0002947.1 mouse_genomes_project 11 101968433 101974305 + A830036E02Rik antisense antisense MGP_CASTEiJ_T0003182.1 MGP_CASTEiJ_G0002947.1 mouse_genomes_project 11 101968438 101969497 + A830036E02Rik antisense antisense MGP_CASTEiJ_T0003183.1 MGP_CASTEiJ_G0002947.1 mouse_genomes_project 11 101971201 101977473 + A830036E02Rik antisense antisense MGP_CASTEiJ_T0003242.1 MGP_CASTEiJ_G0002997.1 mouse_genomes_project 11 121922909 121924313 - Gm11724 antisense antisense MGP_CASTEiJ_T0033584.1 MGP_CASTEiJ_G0018791.1 mouse_genomes_project 11 124286408 124326711 - Aatk protein_coding processed_transcript MGP_CASTEiJ_T0033585.1 MGP_CASTEiJ_G0018791.1 mouse_genomes_project 11 124286408 124291524 - Aatk protein_coding processed_transcript MGP_CASTEiJ_T0033586.1 MGP_CASTEiJ_G0018791.1 mouse_genomes_project 11 124286408 124326614 - MGP_CASTEiJ_P0033586 Aatk protein_coding protein_coding MGP_CASTEiJ_T0033587.1 MGP_CASTEiJ_G0018791.1 mouse_genomes_project 11 124286415 124321570 - MGP_CASTEiJ_P0033587 Aatk protein_coding protein_coding MGP_CASTEiJ_T0033588.1 MGP_CASTEiJ_G0018791.1 mouse_genomes_project 11 124286415 124326689 - MGP_CASTEiJ_P0033588 Aatk protein_coding protein_coding MGP_CASTEiJ_T0033589.1 MGP_CASTEiJ_G0018791.1 mouse_genomes_project 11 124291510 124296020 - Aatk protein_coding processed_transcript MGP_CASTEiJ_T0033590.1 MGP_CASTEiJ_G0018791.1 mouse_genomes_project 11 124292810 124296279 - Aatk protein_coding processed_transcript MGP_CASTEiJ_T0033591.1 MGP_CASTEiJ_G0018791.1 mouse_genomes_project 11 124294525 124295995 - Aatk protein_coding processed_transcript MGP_CASTEiJ_T0033592.1 MGP_CASTEiJ_G0018791.1 mouse_genomes_project 11 124295860 124299305 - Aatk protein_coding processed_transcript MGP_CASTEiJ_T0100440.1 MGP_CASTEiJ_G0037353.1 mouse_genomes_project 11 55714381 55714477 + Gm22603 snoRNA snoRNA MGP_CASTEiJ_T0028417.1 MGP_CASTEiJ_G0017599.1 mouse_genomes_project 11 51227043 51262156 - MGP_CASTEiJ_P0028417 Tcf7 protein_coding protein_coding MGP_CASTEiJ_T0012126.1 MGP_CASTEiJ_G0010289.1 mouse_genomes_project 11 3759776 3760351 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0031071.1 MGP_CASTEiJ_G0018231.1 mouse_genomes_project 11 89636677 89638728 + Cuedc1 protein_coding processed_transcript MGP_CASTEiJ_T0031072.1 MGP_CASTEiJ_G0018231.1 mouse_genomes_project 11 89637909 89730992 + Cuedc1 protein_coding retained_intron MGP_CASTEiJ_T0031073.1 MGP_CASTEiJ_G0018231.1 mouse_genomes_project 11 89705591 89741214 + MGP_CASTEiJ_P0031073 Cuedc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0031074.1 MGP_CASTEiJ_G0018231.1 mouse_genomes_project 11 89713333 89741210 + MGP_CASTEiJ_P0031074 Cuedc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0031075.1 MGP_CASTEiJ_G0018231.1 mouse_genomes_project 11 89727936 89728914 + Cuedc1 protein_coding retained_intron MGP_CASTEiJ_T0031076.1 MGP_CASTEiJ_G0018231.1 mouse_genomes_project 11 89733156 89735972 + Cuedc1 protein_coding processed_transcript MGP_CASTEiJ_T0031077.1 MGP_CASTEiJ_G0018231.1 mouse_genomes_project 11 89734971 89740082 + Cuedc1 protein_coding retained_intron MGP_CASTEiJ_T0030351.1 MGP_CASTEiJ_G0018060.1 mouse_genomes_project 11 78381064 78405287 + MGP_CASTEiJ_P0030351 Nufip2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030352.1 MGP_CASTEiJ_G0018060.1 mouse_genomes_project 11 78381824 78408360 + MGP_CASTEiJ_P0030352 Nufip2 protein_coding protein_coding MGP_CASTEiJ_T0030353.1 MGP_CASTEiJ_G0018060.1 mouse_genomes_project 11 78381841 78437314 + MGP_CASTEiJ_P0030353 Nufip2 protein_coding protein_coding MGP_CASTEiJ_T0030354.1 MGP_CASTEiJ_G0018060.1 mouse_genomes_project 11 78382796 78387462 + Nufip2 protein_coding processed_transcript MGP_CASTEiJ_T0030355.1 MGP_CASTEiJ_G0018060.1 mouse_genomes_project 11 78382832 78387260 + Nufip2 protein_coding processed_transcript MGP_CASTEiJ_T0030491.1 MGP_CASTEiJ_G0018084.1 mouse_genomes_project 11 79107691 79113400 + MGP_CASTEiJ_P0030491 Unc119 protein_coding protein_coding MGP_CASTEiJ_T0030492.1 MGP_CASTEiJ_G0018084.1 mouse_genomes_project 11 79107707 79112054 + Unc119 protein_coding retained_intron MGP_CASTEiJ_T0030493.1 MGP_CASTEiJ_G0018084.1 mouse_genomes_project 11 79107715 79113400 + MGP_CASTEiJ_P0030493 Unc119 protein_coding protein_coding MGP_CASTEiJ_T0030494.1 MGP_CASTEiJ_G0018084.1 mouse_genomes_project 11 79107754 79113132 + Unc119 protein_coding retained_intron MGP_CASTEiJ_T0030495.1 MGP_CASTEiJ_G0018084.1 mouse_genomes_project 11 79110870 79113215 + MGP_CASTEiJ_P0030495 Unc119 protein_coding protein_coding MGP_CASTEiJ_T0030496.1 MGP_CASTEiJ_G0018084.1 mouse_genomes_project 11 79111115 79112356 + Unc119 protein_coding retained_intron MGP_CASTEiJ_T0030497.1 MGP_CASTEiJ_G0018084.1 mouse_genomes_project 11 79112171 79113234 + Unc119 protein_coding retained_intron MGP_CASTEiJ_T0012359.1 MGP_CASTEiJ_G0010522.1 mouse_genomes_project 11 95497311 95498522 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029118.1 MGP_CASTEiJ_G0017770.1 mouse_genomes_project 11 62486679 62487077 + MGP_CASTEiJ_P0029118 Gm10428 protein_coding protein_coding MGP_CASTEiJ_T0012265.1 MGP_CASTEiJ_G0010428.1 mouse_genomes_project 11 57530876 57532150 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009455.1 MGP_CASTEiJ_G0007643.1 mouse_genomes_project 11 70381028 70381112 + Mir497 miRNA miRNA MGP_CASTEiJ_T0031302.1 MGP_CASTEiJ_G0018282.1 mouse_genomes_project 11 97050772 97067358 + MGP_CASTEiJ_P0031302 Ppp1r9b protein_coding protein_coding MGP_CASTEiJ_T0031303.1 MGP_CASTEiJ_G0018282.1 mouse_genomes_project 11 97052616 97061093 + Ppp1r9b protein_coding processed_transcript MGP_CASTEiJ_T0031304.1 MGP_CASTEiJ_G0018282.1 mouse_genomes_project 11 97055827 97067358 + MGP_CASTEiJ_P0031304 Ppp1r9b protein_coding protein_coding MGP_CASTEiJ_T0029250.1 MGP_CASTEiJ_G0017805.1 mouse_genomes_project 11 67823143 67885529 - MGP_CASTEiJ_P0029250 Usp43 protein_coding protein_coding MGP_CASTEiJ_T0029251.1 MGP_CASTEiJ_G0017805.1 mouse_genomes_project 11 67823143 67885529 - MGP_CASTEiJ_P0029251 Usp43 protein_coding protein_coding MGP_CASTEiJ_T0029252.1 MGP_CASTEiJ_G0017805.1 mouse_genomes_project 11 67823951 67838945 - Usp43 protein_coding retained_intron MGP_CASTEiJ_T0029253.1 MGP_CASTEiJ_G0017805.1 mouse_genomes_project 11 67859550 67884585 - Usp43 protein_coding processed_transcript MGP_CASTEiJ_T0006195.1 MGP_CASTEiJ_G0005175.1 mouse_genomes_project 11 117822888 117828357 + 1700025D23Rik lincRNA lincRNA MGP_CASTEiJ_T0009429.1 MGP_CASTEiJ_G0007617.1 mouse_genomes_project 11 49130601 49130696 - Mir804 miRNA miRNA MGP_CASTEiJ_T0027918.1 MGP_CASTEiJ_G0017467.1 mouse_genomes_project 11 32089068 32099747 + MGP_CASTEiJ_P0027918 Kcnmb1 protein_coding protein_coding MGP_CASTEiJ_T0031568.1 MGP_CASTEiJ_G0018348.1 mouse_genomes_project 11 100038776 100044443 - Cwc25 protein_coding processed_transcript MGP_CASTEiJ_T0031569.1 MGP_CASTEiJ_G0018348.1 mouse_genomes_project 11 100038910 100064644 - MGP_CASTEiJ_P0031569 Cwc25 protein_coding protein_coding MGP_CASTEiJ_T0031570.1 MGP_CASTEiJ_G0018348.1 mouse_genomes_project 11 100040961 100045918 - MGP_CASTEiJ_P0031570 Cwc25 protein_coding protein_coding MGP_CASTEiJ_T0031571.1 MGP_CASTEiJ_G0018348.1 mouse_genomes_project 11 100049306 100064628 - MGP_CASTEiJ_P0031571 Cwc25 protein_coding protein_coding MGP_CASTEiJ_T0030242.1 MGP_CASTEiJ_G0018037.1 mouse_genomes_project 11 76812675 76819972 - MGP_CASTEiJ_P0030242 Gemin4 protein_coding protein_coding MGP_CASTEiJ_T0030243.1 MGP_CASTEiJ_G0018037.1 mouse_genomes_project 11 76819512 76819951 - MGP_CASTEiJ_P0030243 Gemin4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009426.1 MGP_CASTEiJ_G0007614.1 mouse_genomes_project 11 48638471 48638576 + Gm23492 miRNA miRNA MGP_CASTEiJ_T0009437.1 MGP_CASTEiJ_G0007625.1 mouse_genomes_project 11 58814443 58814539 - Gm24756 miRNA miRNA MGP_CASTEiJ_T0006120.1 MGP_CASTEiJ_G0005124.1 mouse_genomes_project 11 79217511 79218299 + Gm11195 lincRNA lincRNA MGP_CASTEiJ_T0028756.1 MGP_CASTEiJ_G0017701.1 mouse_genomes_project 11 58641786 58649809 - MGP_CASTEiJ_P0028756 Guk1 protein_coding protein_coding MGP_CASTEiJ_T0028757.1 MGP_CASTEiJ_G0017701.1 mouse_genomes_project 11 58641958 58645630 - MGP_CASTEiJ_P0028757 Guk1 protein_coding protein_coding MGP_CASTEiJ_T0028758.1 MGP_CASTEiJ_G0017701.1 mouse_genomes_project 11 58642021 58643344 - Guk1 protein_coding retained_intron MGP_CASTEiJ_T0028759.1 MGP_CASTEiJ_G0017701.1 mouse_genomes_project 11 58642067 58642760 - Guk1 protein_coding retained_intron MGP_CASTEiJ_T0028760.1 MGP_CASTEiJ_G0017701.1 mouse_genomes_project 11 58644070 58649669 - Guk1 protein_coding retained_intron MGP_CASTEiJ_T0028761.1 MGP_CASTEiJ_G0017701.1 mouse_genomes_project 11 58644680 58650069 - MGP_CASTEiJ_P0028761 Guk1 protein_coding protein_coding MGP_CASTEiJ_T0012253.1 MGP_CASTEiJ_G0010416.1 mouse_genomes_project 11 53093497 53093940 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006186.1 MGP_CASTEiJ_G0005170.1 mouse_genomes_project 11 115656337 115683474 + Gm11680 lincRNA lincRNA MGP_CASTEiJ_T0027870.1 MGP_CASTEiJ_G0017451.1 mouse_genomes_project 11 30240406 30246335 + MGP_CASTEiJ_P0027870 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0030521.1 MGP_CASTEiJ_G0018092.1 mouse_genomes_project 11 79290578 79304934 + MGP_CASTEiJ_P0030521 Poldip2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0030522.1 MGP_CASTEiJ_G0018092.1 mouse_genomes_project 11 79290679 79293762 + Poldip2 protein_coding processed_transcript MGP_CASTEiJ_T0030523.1 MGP_CASTEiJ_G0018092.1 mouse_genomes_project 11 79290707 79302847 + MGP_CASTEiJ_P0030523 Poldip2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0030524.1 MGP_CASTEiJ_G0018092.1 mouse_genomes_project 11 79296039 79298589 + Poldip2 protein_coding retained_intron MGP_CASTEiJ_T0030525.1 MGP_CASTEiJ_G0018092.1 mouse_genomes_project 11 79296572 79299263 + Poldip2 protein_coding retained_intron MGP_CASTEiJ_T0030526.1 MGP_CASTEiJ_G0018092.1 mouse_genomes_project 11 79298987 79299939 + Poldip2 protein_coding retained_intron MGP_CASTEiJ_T0102018.1 MGP_CASTEiJ_G0038743.1 mouse_genomes_project 11 125127149 125130622 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0028902.1 MGP_CASTEiJ_G0017733.1 mouse_genomes_project 11 60296799 60301361 + MGP_CASTEiJ_P0028902 Mief2 protein_coding protein_coding MGP_CASTEiJ_T0028903.1 MGP_CASTEiJ_G0017733.1 mouse_genomes_project 11 60296844 60299410 + Mief2 protein_coding retained_intron MGP_CASTEiJ_T0028904.1 MGP_CASTEiJ_G0017733.1 mouse_genomes_project 11 60296846 60299064 + Mief2 protein_coding processed_transcript MGP_CASTEiJ_T0032976.1 MGP_CASTEiJ_G0018682.1 mouse_genomes_project 11 119148602 119169770 - MGP_CASTEiJ_P0032976 Fads6 protein_coding protein_coding MGP_CASTEiJ_T0032977.1 MGP_CASTEiJ_G0018682.1 mouse_genomes_project 11 119167203 119169919 - Fads6 protein_coding processed_transcript MGP_CASTEiJ_T0029271.1 MGP_CASTEiJ_G0017810.1 mouse_genomes_project 11 68511231 68560890 + MGP_CASTEiJ_P0029271 Pik3r6 protein_coding protein_coding MGP_CASTEiJ_T0029272.1 MGP_CASTEiJ_G0017810.1 mouse_genomes_project 11 68511231 68560890 + MGP_CASTEiJ_P0029272 Pik3r6 protein_coding protein_coding MGP_CASTEiJ_T0029273.1 MGP_CASTEiJ_G0017810.1 mouse_genomes_project 11 68511303 68560890 + Pik3r6 protein_coding processed_transcript MGP_CASTEiJ_T0029274.1 MGP_CASTEiJ_G0017810.1 mouse_genomes_project 11 68543712 68551808 + Pik3r6 protein_coding processed_transcript MGP_CASTEiJ_T0029275.1 MGP_CASTEiJ_G0017810.1 mouse_genomes_project 11 68560255 68560888 + Pik3r6 protein_coding processed_transcript MGP_CASTEiJ_T0101979.1 MGP_CASTEiJ_G0038704.1 mouse_genomes_project 11 45268281 45268554 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0003044.1 MGP_CASTEiJ_G0002837.1 mouse_genomes_project 11 44936388 44939070 + Gm12167 antisense antisense MGP_CASTEiJ_T0028794.1 MGP_CASTEiJ_G0017711.1 mouse_genomes_project 11 59027302 59062013 + MGP_CASTEiJ_P0028794 protein_coding unknown_likely_coding MGP_CASTEiJ_T0028795.1 MGP_CASTEiJ_G0017711.1 mouse_genomes_project 11 59034178 59039490 + MGP_CASTEiJ_P0028795 protein_coding protein_coding MGP_CASTEiJ_T0029426.1 MGP_CASTEiJ_G0017844.1 mouse_genomes_project 11 69640170 69646287 - MGP_CASTEiJ_P0029426 Efnb3 protein_coding protein_coding MGP_CASTEiJ_T0012129.1 MGP_CASTEiJ_G0010292.1 mouse_genomes_project 11 3855547 3855859 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012141.1 MGP_CASTEiJ_G0010304.1 mouse_genomes_project 11 11891626 11892175 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0029668.1 MGP_CASTEiJ_G0017896.1 mouse_genomes_project 11 70381527 70386154 - MGP_CASTEiJ_P0029668 Rnasek protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0029673.1 MGP_CASTEiJ_G0017896.1 mouse_genomes_project 11 70381571 70386127 - MGP_CASTEiJ_P0029673 Rnasek protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0002296.1 MGP_CASTEiJ_G0002214.1 mouse_genomes_project 9 72097304 72098861 - TEC TEC MGP_CASTEiJ_T0010726.1 MGP_CASTEiJ_G0008914.1 mouse_genomes_project 9 6668133 6669041 - miRNA miRNA MGP_CASTEiJ_T0100162.1 MGP_CASTEiJ_G0037075.1 mouse_genomes_project 9 107943904 107944011 + Gm22454 snRNA snRNA MGP_CASTEiJ_T0091681.1 MGP_CASTEiJ_G0033494.1 mouse_genomes_project 9 21594450 21800670 + MGP_CASTEiJ_P0091681 Npsr1 protein_coding protein_coding MGP_CASTEiJ_T0091682.1 MGP_CASTEiJ_G0033494.1 mouse_genomes_project 9 21594472 21829691 + MGP_CASTEiJ_P0091682 Npsr1 protein_coding protein_coding MGP_CASTEiJ_T0091683.1 MGP_CASTEiJ_G0033494.1 mouse_genomes_project 9 21794224 21826686 + MGP_CASTEiJ_P0091683 Npsr1 protein_coding protein_coding MGP_CASTEiJ_T0091684.1 MGP_CASTEiJ_G0033494.1 mouse_genomes_project 9 21811088 21828165 + Npsr1 protein_coding processed_transcript MGP_CASTEiJ_T0002350.1 MGP_CASTEiJ_G0002267.1 mouse_genomes_project 9 99694711 99697574 + TEC TEC MGP_CASTEiJ_T0101415.1 MGP_CASTEiJ_G0038328.1 mouse_genomes_project 9 111148486 111148612 - Gm23377 snoRNA snoRNA MGP_CASTEiJ_T0092824.1 MGP_CASTEiJ_G0033902.1 mouse_genomes_project 9 58647313 58681830 - MGP_CASTEiJ_P0092824 Bbs4 protein_coding protein_coding MGP_CASTEiJ_T0015534.1 MGP_CASTEiJ_G0013697.1 mouse_genomes_project 9 104817524 104818133 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005368.1 MGP_CASTEiJ_G0004540.1 mouse_genomes_project 9 98940542 98941798 + Gm37637 antisense antisense MGP_CASTEiJ_T0094818.1 MGP_CASTEiJ_G0034301.1 mouse_genomes_project 9 109516961 109523406 - MGP_CASTEiJ_P0094818 Wdr6 protein_coding protein_coding MGP_CASTEiJ_T0091986.1 MGP_CASTEiJ_G0033601.1 mouse_genomes_project 9 36352464 36354574 + MGP_CASTEiJ_P0091986 Olfr147 protein_coding protein_coding MGP_CASTEiJ_T0091416.1 MGP_CASTEiJ_G0033380.1 mouse_genomes_project 9 13044688 13522880 - MGP_CASTEiJ_P0091416 Fat3 protein_coding protein_coding MGP_CASTEiJ_T0091417.1 MGP_CASTEiJ_G0033380.1 mouse_genomes_project 9 13503423 13528066 - MGP_CASTEiJ_P0091417 Fat3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0101370.1 MGP_CASTEiJ_G0038283.1 mouse_genomes_project 9 37702041 37702175 - Gm24278 snoRNA snoRNA MGP_CASTEiJ_T0095404.1 MGP_CASTEiJ_G0034421.1 mouse_genomes_project 9 121931294 121936097 + MGP_CASTEiJ_P0095404 Rpsa protein_coding protein_coding MGP_CASTEiJ_T0015530.1 MGP_CASTEiJ_G0013693.1 mouse_genomes_project 9 103073569 103075070 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0094098.1 MGP_CASTEiJ_G0034186.1 mouse_genomes_project 9 103385455 103463013 + MGP_CASTEiJ_P0094098 Ryk protein_coding protein_coding MGP_CASTEiJ_T0094099.1 MGP_CASTEiJ_G0034186.1 mouse_genomes_project 9 103385510 103463424 + MGP_CASTEiJ_P0094099 Ryk protein_coding protein_coding MGP_CASTEiJ_T0094100.1 MGP_CASTEiJ_G0034186.1 mouse_genomes_project 9 103385520 103463777 + MGP_CASTEiJ_P0094100 Ryk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094101.1 MGP_CASTEiJ_G0034186.1 mouse_genomes_project 9 103397422 103414141 + Ryk protein_coding processed_transcript MGP_CASTEiJ_T0094102.1 MGP_CASTEiJ_G0034186.1 mouse_genomes_project 9 103421333 103435593 + Ryk protein_coding retained_intron MGP_CASTEiJ_T0094103.1 MGP_CASTEiJ_G0034186.1 mouse_genomes_project 9 103453803 103454798 + Ryk protein_coding retained_intron MGP_CASTEiJ_T0101386.1 MGP_CASTEiJ_G0038299.1 mouse_genomes_project 9 64570809 64570951 - Gm24347 snoRNA snoRNA MGP_CASTEiJ_T0094981.1 MGP_CASTEiJ_G0034328.1 mouse_genomes_project 9 110847412 110851511 - MGP_CASTEiJ_P0094981 Camp protein_coding protein_coding MGP_CASTEiJ_T0010740.1 MGP_CASTEiJ_G0008928.1 mouse_genomes_project 9 29869127 29869253 + Gm44453 miRNA miRNA MGP_CASTEiJ_T0092580.1 MGP_CASTEiJ_G0033829.1 mouse_genomes_project 9 53526069 53532098 + MGP_CASTEiJ_P0092580 Sh2d7 protein_coding protein_coding MGP_CASTEiJ_T0092581.1 MGP_CASTEiJ_G0033829.1 mouse_genomes_project 9 53526073 53530731 + MGP_CASTEiJ_P0092581 Sh2d7 protein_coding protein_coding MGP_CASTEiJ_T0091456.1 MGP_CASTEiJ_G0033405.1 mouse_genomes_project 9 16768226 16769174 - MGP_CASTEiJ_P0091456 Olfr854 protein_coding protein_coding MGP_CASTEiJ_T0092589.1 MGP_CASTEiJ_G0033833.1 mouse_genomes_project 9 53706383 53722391 + MGP_CASTEiJ_P0092589 Dnaja4 protein_coding protein_coding MGP_CASTEiJ_T0092590.1 MGP_CASTEiJ_G0033833.1 mouse_genomes_project 9 53707024 53716916 + MGP_CASTEiJ_P0092590 Dnaja4 protein_coding protein_coding MGP_CASTEiJ_T0092591.1 MGP_CASTEiJ_G0033833.1 mouse_genomes_project 9 53707069 53723945 + MGP_CASTEiJ_P0092591 Dnaja4 protein_coding protein_coding MGP_CASTEiJ_T0095387.1 MGP_CASTEiJ_G0034414.1 mouse_genomes_project 9 121682903 121870213 - MGP_CASTEiJ_P0095387 Cx3cr1 protein_coding protein_coding MGP_CASTEiJ_T0095395.1 MGP_CASTEiJ_G0034414.1 mouse_genomes_project 9 121849454 121870212 - MGP_CASTEiJ_P0095395 Cx3cr1 protein_coding protein_coding MGP_CASTEiJ_T0005337.1 MGP_CASTEiJ_G0004522.1 mouse_genomes_project 9 80132862 80135000 + 4930562D21Rik antisense antisense MGP_CASTEiJ_T0095288.1 MGP_CASTEiJ_G0034388.1 mouse_genomes_project 9 117399659 117540825 + MGP_CASTEiJ_P0095288 Gadl1 protein_coding protein_coding MGP_CASTEiJ_T0095289.1 MGP_CASTEiJ_G0034388.1 mouse_genomes_project 9 117399659 117581602 + MGP_CASTEiJ_P0095289 Gadl1 protein_coding protein_coding MGP_CASTEiJ_T0095290.1 MGP_CASTEiJ_G0034388.1 mouse_genomes_project 9 117428419 117579950 + MGP_CASTEiJ_P0095290 Gadl1 protein_coding protein_coding MGP_CASTEiJ_T0094139.1 MGP_CASTEiJ_G0034194.1 mouse_genomes_project 9 103948405 103957584 - MGP_CASTEiJ_P0094139 protein_coding protein_coding MGP_CASTEiJ_T0094140.1 MGP_CASTEiJ_G0034194.1 mouse_genomes_project 9 103954038 103957437 - protein_coding retained_intron MGP_CASTEiJ_T0093403.1 MGP_CASTEiJ_G0034035.1 mouse_genomes_project 9 75043177 75074764 + MGP_CASTEiJ_P0093403 Onecut1 protein_coding protein_coding MGP_CASTEiJ_T0093404.1 MGP_CASTEiJ_G0034035.1 mouse_genomes_project 9 75047691 75073343 + Onecut1 protein_coding processed_transcript MGP_CASTEiJ_T0093530.1 MGP_CASTEiJ_G0034072.1 mouse_genomes_project 9 79020805 79131510 + MGP_CASTEiJ_P0093530 Cd109 protein_coding protein_coding MGP_CASTEiJ_T0093531.1 MGP_CASTEiJ_G0034072.1 mouse_genomes_project 9 79021022 79023336 + Cd109 protein_coding processed_transcript MGP_CASTEiJ_T0092090.1 MGP_CASTEiJ_G0033673.1 mouse_genomes_project 9 38858248 38858651 + MGP_CASTEiJ_P0092090 Gm21915 protein_coding protein_coding MGP_CASTEiJ_T0008973.1 MGP_CASTEiJ_G0007224.1 mouse_genomes_project 9 11903427 11908596 + lincRNA lincRNA MGP_CASTEiJ_T0101396.1 MGP_CASTEiJ_G0038309.1 mouse_genomes_project 9 82799604 82799735 + Gm23748 snoRNA snoRNA MGP_CASTEiJ_T0002278.1 MGP_CASTEiJ_G0002196.1 mouse_genomes_project 9 30329497 30332232 - TEC TEC MGP_CASTEiJ_T0092054.1 MGP_CASTEiJ_G0033657.1 mouse_genomes_project 9 38110596 38111529 - MGP_CASTEiJ_P0092054 Olfr975 protein_coding protein_coding MGP_CASTEiJ_T0094590.1 MGP_CASTEiJ_G0034268.1 mouse_genomes_project 9 108834630 108848606 + MGP_CASTEiJ_P0094590 Camkv protein_coding protein_coding MGP_CASTEiJ_T0094591.1 MGP_CASTEiJ_G0034268.1 mouse_genomes_project 9 108834854 108848592 + Camkv protein_coding retained_intron MGP_CASTEiJ_T0094592.1 MGP_CASTEiJ_G0034268.1 mouse_genomes_project 9 108834864 108845110 + MGP_CASTEiJ_P0094592 Camkv protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094593.1 MGP_CASTEiJ_G0034268.1 mouse_genomes_project 9 108836257 108844459 + MGP_CASTEiJ_P0094593 Camkv protein_coding protein_coding MGP_CASTEiJ_T0094594.1 MGP_CASTEiJ_G0034268.1 mouse_genomes_project 9 108844180 108848598 + MGP_CASTEiJ_P0094594 Camkv protein_coding protein_coding MGP_CASTEiJ_T0094186.1 MGP_CASTEiJ_G0034203.1 mouse_genomes_project 9 104933943 104985846 - MGP_CASTEiJ_P0094186 Acpp protein_coding protein_coding MGP_CASTEiJ_T0094187.1 MGP_CASTEiJ_G0034203.1 mouse_genomes_project 9 104936679 104946908 - Acpp protein_coding processed_transcript MGP_CASTEiJ_T0094188.1 MGP_CASTEiJ_G0034203.1 mouse_genomes_project 9 104944670 104985825 - MGP_CASTEiJ_P0094188 Acpp protein_coding protein_coding MGP_CASTEiJ_T0094189.1 MGP_CASTEiJ_G0034203.1 mouse_genomes_project 9 104953585 104985800 - Acpp protein_coding retained_intron MGP_CASTEiJ_T0094190.1 MGP_CASTEiJ_G0034203.1 mouse_genomes_project 9 104967387 104985825 - Acpp protein_coding retained_intron MGP_CASTEiJ_T0101362.1 MGP_CASTEiJ_G0038275.1 mouse_genomes_project 9 21867597 21867692 + Gm22380 snoRNA snoRNA MGP_CASTEiJ_T0010744.1 MGP_CASTEiJ_G0008932.1 mouse_genomes_project 9 39801595 39801691 + Mirlet7a-2 miRNA miRNA MGP_CASTEiJ_T0091617.1 MGP_CASTEiJ_G0033465.1 mouse_genomes_project 9 19148205 19153794 - MGP_CASTEiJ_P0091617 Spc24 protein_coding protein_coding MGP_CASTEiJ_T0091432.1 MGP_CASTEiJ_G0033386.1 mouse_genomes_project 9 15626985 15651965 - MGP_CASTEiJ_P0091432 Zfp558 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091433.1 MGP_CASTEiJ_G0033386.1 mouse_genomes_project 9 15627593 15647221 - MGP_CASTEiJ_P0091433 Zfp558 protein_coding protein_coding MGP_CASTEiJ_T0091434.1 MGP_CASTEiJ_G0033386.1 mouse_genomes_project 9 15627668 15647280 - MGP_CASTEiJ_P0091434 Zfp558 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091435.1 MGP_CASTEiJ_G0033386.1 mouse_genomes_project 9 15631059 15651970 - Zfp558 protein_coding processed_transcript MGP_CASTEiJ_T0091436.1 MGP_CASTEiJ_G0033386.1 mouse_genomes_project 9 15646516 15647084 - Zfp558 protein_coding processed_transcript MGP_CASTEiJ_T0091977.1 MGP_CASTEiJ_G0033592.1 mouse_genomes_project 9 36140477 36141427 - MGP_CASTEiJ_P0091977 protein_coding protein_coding MGP_CASTEiJ_T0092734.1 MGP_CASTEiJ_G0033883.1 mouse_genomes_project 9 57034260 57082660 - MGP_CASTEiJ_P0092734 Arid3b protein_coding protein_coding MGP_CASTEiJ_T0092735.1 MGP_CASTEiJ_G0033883.1 mouse_genomes_project 9 57034263 57082662 - MGP_CASTEiJ_P0092735 Arid3b protein_coding protein_coding MGP_CASTEiJ_T0092736.1 MGP_CASTEiJ_G0033883.1 mouse_genomes_project 9 57034266 57035553 - Arid3b protein_coding processed_transcript MGP_CASTEiJ_T0092737.1 MGP_CASTEiJ_G0033883.1 mouse_genomes_project 9 57034415 57078120 - MGP_CASTEiJ_P0092737 Arid3b protein_coding protein_coding MGP_CASTEiJ_T0092738.1 MGP_CASTEiJ_G0033883.1 mouse_genomes_project 9 57036065 57040097 - MGP_CASTEiJ_P0092738 Arid3b protein_coding protein_coding MGP_CASTEiJ_T0092739.1 MGP_CASTEiJ_G0033883.1 mouse_genomes_project 9 57036327 57082432 - MGP_CASTEiJ_P0092739 Arid3b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092740.1 MGP_CASTEiJ_G0033883.1 mouse_genomes_project 9 57038561 57082715 - MGP_CASTEiJ_P0092740 Arid3b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092741.1 MGP_CASTEiJ_G0033883.1 mouse_genomes_project 9 57038562 57082747 - MGP_CASTEiJ_P0092741 Arid3b protein_coding protein_coding MGP_CASTEiJ_T0092742.1 MGP_CASTEiJ_G0033883.1 mouse_genomes_project 9 57042028 57064423 - MGP_CASTEiJ_P0092742 Arid3b protein_coding protein_coding MGP_CASTEiJ_T0092743.1 MGP_CASTEiJ_G0033883.1 mouse_genomes_project 9 57052029 57082724 - Arid3b protein_coding retained_intron MGP_CASTEiJ_T0009101.1 MGP_CASTEiJ_G0007329.1 mouse_genomes_project 9 110675314 110684118 - lincRNA lincRNA MGP_CASTEiJ_T0009102.1 MGP_CASTEiJ_G0007329.1 mouse_genomes_project 9 110675320 110684719 - lincRNA lincRNA MGP_CASTEiJ_T0009103.1 MGP_CASTEiJ_G0007329.1 mouse_genomes_project 9 110675320 110684777 - lincRNA lincRNA MGP_CASTEiJ_T0092346.1 MGP_CASTEiJ_G0033752.1 mouse_genomes_project 9 44575554 44790253 + MGP_CASTEiJ_P0092346 Sik3 protein_coding protein_coding MGP_CASTEiJ_T0092347.1 MGP_CASTEiJ_G0033752.1 mouse_genomes_project 9 44575598 44788330 + MGP_CASTEiJ_P0092347 Sik3 protein_coding protein_coding MGP_CASTEiJ_T0092348.1 MGP_CASTEiJ_G0033752.1 mouse_genomes_project 9 44575731 44787289 + MGP_CASTEiJ_P0092348 Sik3 protein_coding protein_coding MGP_CASTEiJ_T0092349.1 MGP_CASTEiJ_G0033752.1 mouse_genomes_project 9 44690496 44768831 + MGP_CASTEiJ_P0092349 Sik3 protein_coding protein_coding MGP_CASTEiJ_T0092350.1 MGP_CASTEiJ_G0033752.1 mouse_genomes_project 9 44717166 44790247 + Sik3 protein_coding processed_transcript MGP_CASTEiJ_T0092351.1 MGP_CASTEiJ_G0033752.1 mouse_genomes_project 9 44785627 44787289 + MGP_CASTEiJ_P0092351 Sik3 protein_coding protein_coding MGP_CASTEiJ_T0008998.1 MGP_CASTEiJ_G0007247.1 mouse_genomes_project 9 39428211 39590933 + lincRNA lincRNA MGP_CASTEiJ_T0005306.1 MGP_CASTEiJ_G0004501.1 mouse_genomes_project 9 53257115 53287180 - Gldnos antisense antisense MGP_CASTEiJ_T0101407.1 MGP_CASTEiJ_G0038320.1 mouse_genomes_project 9 101714549 101714676 + Gm24338 snoRNA snoRNA MGP_CASTEiJ_T0015472.1 MGP_CASTEiJ_G0013635.1 mouse_genomes_project 9 77436125 77438325 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092776.1 MGP_CASTEiJ_G0033890.1 mouse_genomes_project 9 57465320 57471306 - MGP_CASTEiJ_P0092776 Islr2 protein_coding protein_coding MGP_CASTEiJ_T0092777.1 MGP_CASTEiJ_G0033890.1 mouse_genomes_project 9 57465320 57470827 - MGP_CASTEiJ_P0092777 Islr2 protein_coding protein_coding MGP_CASTEiJ_T0092778.1 MGP_CASTEiJ_G0033890.1 mouse_genomes_project 9 57465320 57473348 - MGP_CASTEiJ_P0092778 Islr2 protein_coding protein_coding MGP_CASTEiJ_T0092779.1 MGP_CASTEiJ_G0033890.1 mouse_genomes_project 9 57465320 57471555 - MGP_CASTEiJ_P0092779 Islr2 protein_coding protein_coding MGP_CASTEiJ_T0092780.1 MGP_CASTEiJ_G0033890.1 mouse_genomes_project 9 57465320 57470737 - MGP_CASTEiJ_P0092780 Islr2 protein_coding protein_coding MGP_CASTEiJ_T0011506.1 MGP_CASTEiJ_G0009669.1 mouse_genomes_project 9 120927204 120952013 - MGP_CASTEiJ_P0011506 Slc22a13 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0093030.1 MGP_CASTEiJ_G0033953.1 mouse_genomes_project 9 64810568 64856213 + MGP_CASTEiJ_P0093030 Igdcc4 protein_coding protein_coding MGP_CASTEiJ_T0093031.1 MGP_CASTEiJ_G0033953.1 mouse_genomes_project 9 64810617 64853813 + MGP_CASTEiJ_P0093031 Igdcc4 protein_coding protein_coding MGP_CASTEiJ_T0093354.1 MGP_CASTEiJ_G0034022.1 mouse_genomes_project 9 72960068 73080375 + MGP_CASTEiJ_P0093354 Prtg protein_coding protein_coding MGP_CASTEiJ_T0093355.1 MGP_CASTEiJ_G0034022.1 mouse_genomes_project 9 73073719 73075402 + Prtg protein_coding retained_intron MGP_CASTEiJ_T0091968.1 MGP_CASTEiJ_G0033584.1 mouse_genomes_project 9 35949404 35950352 + MGP_CASTEiJ_P0091968 Olfr881 protein_coding protein_coding MGP_CASTEiJ_T0093894.1 MGP_CASTEiJ_G0034141.1 mouse_genomes_project 9 96812992 96909293 - MGP_CASTEiJ_P0093894 Rasa2 protein_coding protein_coding MGP_CASTEiJ_T0093895.1 MGP_CASTEiJ_G0034141.1 mouse_genomes_project 9 96815992 96818871 - Rasa2 protein_coding retained_intron MGP_CASTEiJ_T0093896.1 MGP_CASTEiJ_G0034141.1 mouse_genomes_project 9 96819986 96909212 - MGP_CASTEiJ_P0093896 Rasa2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093897.1 MGP_CASTEiJ_G0034141.1 mouse_genomes_project 9 96831804 96846952 - Rasa2 protein_coding retained_intron MGP_CASTEiJ_T0093898.1 MGP_CASTEiJ_G0034141.1 mouse_genomes_project 9 96832509 96839043 - Rasa2 protein_coding retained_intron MGP_CASTEiJ_T0093899.1 MGP_CASTEiJ_G0034141.1 mouse_genomes_project 9 96846796 96855348 - Rasa2 protein_coding retained_intron MGP_CASTEiJ_T0002315.1 MGP_CASTEiJ_G0002233.1 mouse_genomes_project 9 76322727 76326052 + TEC TEC MGP_CASTEiJ_T0008985.1 MGP_CASTEiJ_G0007236.1 mouse_genomes_project 9 30736590 30762554 - Gm27162 lincRNA lincRNA MGP_CASTEiJ_T0092665.1 MGP_CASTEiJ_G0033856.1 mouse_genomes_project 9 55987642 55990948 - MGP_CASTEiJ_P0092665 Odf3l1 protein_coding protein_coding MGP_CASTEiJ_T0091272.1 MGP_CASTEiJ_G0033341.1 mouse_genomes_project 9 4897890 4924688 - MGP_CASTEiJ_P0091272 Birc3 protein_coding protein_coding MGP_CASTEiJ_T0091273.1 MGP_CASTEiJ_G0033341.1 mouse_genomes_project 9 4898886 4909137 - MGP_CASTEiJ_P0091273 Birc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091274.1 MGP_CASTEiJ_G0033341.1 mouse_genomes_project 9 4905033 4924647 - MGP_CASTEiJ_P0091274 Birc3 protein_coding protein_coding MGP_CASTEiJ_T0091275.1 MGP_CASTEiJ_G0033341.1 mouse_genomes_project 9 4909601 4924833 - MGP_CASTEiJ_P0091275 Birc3 protein_coding protein_coding MGP_CASTEiJ_T0091276.1 MGP_CASTEiJ_G0033341.1 mouse_genomes_project 9 4909620 4924849 - MGP_CASTEiJ_P0091276 Birc3 protein_coding protein_coding MGP_CASTEiJ_T0091277.1 MGP_CASTEiJ_G0033341.1 mouse_genomes_project 9 4914998 4924521 - Birc3 protein_coding processed_transcript MGP_CASTEiJ_T0091278.1 MGP_CASTEiJ_G0033341.1 mouse_genomes_project 9 4918570 4924561 - Birc3 protein_coding processed_transcript MGP_CASTEiJ_T0094617.1 MGP_CASTEiJ_G0034271.1 mouse_genomes_project 9 108882990 108894829 + Gm20661 protein_coding retained_intron MGP_CASTEiJ_T0094618.1 MGP_CASTEiJ_G0034271.1 mouse_genomes_project 9 108883025 108893853 + Gm20661 protein_coding retained_intron MGP_CASTEiJ_T0094619.1 MGP_CASTEiJ_G0034271.1 mouse_genomes_project 9 108883214 108894384 + MGP_CASTEiJ_P0094619 Gm20661 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093598.1 MGP_CASTEiJ_G0034084.1 mouse_genomes_project 9 83689482 83690360 - Hmgn3 protein_coding processed_transcript MGP_CASTEiJ_T0093599.1 MGP_CASTEiJ_G0034084.1 mouse_genomes_project 9 83689482 83726020 - MGP_CASTEiJ_P0093599 Hmgn3 protein_coding protein_coding MGP_CASTEiJ_T0093600.1 MGP_CASTEiJ_G0034084.1 mouse_genomes_project 9 83689482 83725885 - MGP_CASTEiJ_P0093600 Hmgn3 protein_coding protein_coding MGP_CASTEiJ_T0093601.1 MGP_CASTEiJ_G0034084.1 mouse_genomes_project 9 83689482 83725945 - MGP_CASTEiJ_P0093601 Hmgn3 protein_coding protein_coding MGP_CASTEiJ_T0093602.1 MGP_CASTEiJ_G0034084.1 mouse_genomes_project 9 83689482 83726100 - MGP_CASTEiJ_P0093602 Hmgn3 protein_coding protein_coding MGP_CASTEiJ_T0093603.1 MGP_CASTEiJ_G0034084.1 mouse_genomes_project 9 83689502 83690666 - Hmgn3 protein_coding retained_intron MGP_CASTEiJ_T0093604.1 MGP_CASTEiJ_G0034084.1 mouse_genomes_project 9 83689715 83692109 - Hmgn3 protein_coding retained_intron MGP_CASTEiJ_T0093605.1 MGP_CASTEiJ_G0034084.1 mouse_genomes_project 9 83689912 83725932 - MGP_CASTEiJ_P0093605 Hmgn3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093606.1 MGP_CASTEiJ_G0034084.1 mouse_genomes_project 9 83690254 83690628 - Hmgn3 protein_coding retained_intron MGP_CASTEiJ_T0093838.1 MGP_CASTEiJ_G0034131.1 mouse_genomes_project 9 95747972 95756333 + MGP_CASTEiJ_P0093838 Paqr9 protein_coding protein_coding MGP_CASTEiJ_T0091879.1 MGP_CASTEiJ_G0033557.1 mouse_genomes_project 9 34562053 34567659 + MGP_CASTEiJ_P0091879 Acrv1 protein_coding protein_coding MGP_CASTEiJ_T0091880.1 MGP_CASTEiJ_G0033557.1 mouse_genomes_project 9 34562087 34566172 + Acrv1 protein_coding retained_intron MGP_CASTEiJ_T0095266.1 MGP_CASTEiJ_G0034378.1 mouse_genomes_project 9 115879240 115939193 - MGP_CASTEiJ_P0095266 Trim71 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092710.1 MGP_CASTEiJ_G0033867.1 mouse_genomes_project 9 56439700 56449969 - MGP_CASTEiJ_P0092710 1700017B05Rik protein_coding protein_coding MGP_CASTEiJ_T0009063.1 MGP_CASTEiJ_G0007299.1 mouse_genomes_project 9 91510954 91688521 + Gm29478 lincRNA lincRNA MGP_CASTEiJ_T0002373.1 MGP_CASTEiJ_G0002290.1 mouse_genomes_project 9 104905700 104907223 + TEC TEC MGP_CASTEiJ_T0009031.1 MGP_CASTEiJ_G0007272.1 mouse_genomes_project 9 70182011 70214872 - Gm26849 lincRNA lincRNA MGP_CASTEiJ_T0091975.1 MGP_CASTEiJ_G0033590.1 mouse_genomes_project 9 36072823 36075034 + MGP_CASTEiJ_P0091975 Olfr889 protein_coding protein_coding MGP_CASTEiJ_T0094958.1 MGP_CASTEiJ_G0034323.1 mouse_genomes_project 9 110119969 110453478 - MGP_CASTEiJ_P0094958 Fbxw13 protein_coding protein_coding MGP_CASTEiJ_T0094959.1 MGP_CASTEiJ_G0034323.1 mouse_genomes_project 9 110119990 110453465 - MGP_CASTEiJ_P0094959 Fbxw13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094960.1 MGP_CASTEiJ_G0034323.1 mouse_genomes_project 9 110122251 110143587 - MGP_CASTEiJ_P0094960 Fbxw13 protein_coding protein_coding MGP_CASTEiJ_T0092220.1 MGP_CASTEiJ_G0033719.1 mouse_genomes_project 9 43080690 43122102 + MGP_CASTEiJ_P0092220 Ddx6 protein_coding protein_coding MGP_CASTEiJ_T0091255.1 MGP_CASTEiJ_G0033332.1 mouse_genomes_project 9 4440587 4517672 + MGP_CASTEiJ_P0091255 Mmp1a protein_coding protein_coding MGP_CASTEiJ_T0002349.1 MGP_CASTEiJ_G0002266.1 mouse_genomes_project 9 99632210 99633962 - TEC TEC MGP_CASTEiJ_T0101368.1 MGP_CASTEiJ_G0038281.1 mouse_genomes_project 9 35088827 35088942 - Gm25273 snoRNA snoRNA MGP_CASTEiJ_T0010775.1 MGP_CASTEiJ_G0008963.1 mouse_genomes_project 9 102824147 102824199 - Mir7243 miRNA miRNA MGP_CASTEiJ_T0100103.1 MGP_CASTEiJ_G0037016.1 mouse_genomes_project 9 3730460 3730565 - Gm23097 snRNA snRNA MGP_CASTEiJ_T0094336.1 MGP_CASTEiJ_G0034227.1 mouse_genomes_project 9 107279546 107281523 - MGP_CASTEiJ_P0094336 Gpr62 protein_coding protein_coding MGP_CASTEiJ_T0002320.1 MGP_CASTEiJ_G0002238.1 mouse_genomes_project 9 83693681 83696484 + TEC TEC MGP_CASTEiJ_T0015526.1 MGP_CASTEiJ_G0013689.1 mouse_genomes_project 9 101546134 101546496 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017798.1 MGP_CASTEiJ_G0015061.1 mouse_genomes_project 9 77903789 77905294 + Gm19569 processed_transcript lincRNA MGP_CASTEiJ_T0017799.1 MGP_CASTEiJ_G0015061.1 mouse_genomes_project 9 77904032 77905294 + Gm19569 processed_transcript retained_intron MGP_CASTEiJ_T0091541.1 MGP_CASTEiJ_G0033438.1 mouse_genomes_project 9 18338200 18344073 + MGP_CASTEiJ_P0091541 Mrpl4 protein_coding protein_coding MGP_CASTEiJ_T0101381.1 MGP_CASTEiJ_G0038294.1 mouse_genomes_project 9 63813055 63813123 + Gm23344 snoRNA snoRNA MGP_CASTEiJ_T0094727.1 MGP_CASTEiJ_G0034292.1 mouse_genomes_project 9 109384397 109398287 - MGP_CASTEiJ_P0094727 Klhdc8b protein_coding protein_coding MGP_CASTEiJ_T0094728.1 MGP_CASTEiJ_G0034292.1 mouse_genomes_project 9 109384419 109389449 - Klhdc8b protein_coding retained_intron MGP_CASTEiJ_T0094729.1 MGP_CASTEiJ_G0034292.1 mouse_genomes_project 9 109384419 109387535 - Klhdc8b protein_coding retained_intron MGP_CASTEiJ_T0094730.1 MGP_CASTEiJ_G0034292.1 mouse_genomes_project 9 109384419 109389108 - MGP_CASTEiJ_P0094730 Klhdc8b protein_coding protein_coding MGP_CASTEiJ_T0094731.1 MGP_CASTEiJ_G0034292.1 mouse_genomes_project 9 109384593 109389135 - MGP_CASTEiJ_P0094731 Klhdc8b protein_coding protein_coding MGP_CASTEiJ_T0094732.1 MGP_CASTEiJ_G0034292.1 mouse_genomes_project 9 109384734 109397774 - MGP_CASTEiJ_P0094732 Klhdc8b protein_coding protein_coding MGP_CASTEiJ_T0094733.1 MGP_CASTEiJ_G0034292.1 mouse_genomes_project 9 109385029 109387100 - Klhdc8b protein_coding processed_transcript MGP_CASTEiJ_T0094734.1 MGP_CASTEiJ_G0034292.1 mouse_genomes_project 9 109387985 109389497 - Klhdc8b protein_coding processed_transcript MGP_CASTEiJ_T0094735.1 MGP_CASTEiJ_G0034292.1 mouse_genomes_project 9 109388006 109389532 - Klhdc8b protein_coding retained_intron MGP_CASTEiJ_T0094736.1 MGP_CASTEiJ_G0034292.1 mouse_genomes_project 9 109389318 109397627 - Klhdc8b protein_coding processed_transcript MGP_CASTEiJ_T0094737.1 MGP_CASTEiJ_G0034292.1 mouse_genomes_project 9 109391406 109397627 - Klhdc8b protein_coding retained_intron MGP_CASTEiJ_T0094738.1 MGP_CASTEiJ_G0034292.1 mouse_genomes_project 9 109391408 109393628 - Klhdc8b protein_coding retained_intron MGP_CASTEiJ_T0094739.1 MGP_CASTEiJ_G0034292.1 mouse_genomes_project 9 109391599 109397771 - Klhdc8b protein_coding processed_transcript MGP_CASTEiJ_T0094740.1 MGP_CASTEiJ_G0034292.1 mouse_genomes_project 9 109395132 109396776 - Klhdc8b protein_coding retained_intron MGP_CASTEiJ_T0094741.1 MGP_CASTEiJ_G0034292.1 mouse_genomes_project 9 109395929 109397626 - Klhdc8b protein_coding retained_intron MGP_CASTEiJ_T0092708.1 MGP_CASTEiJ_G0033865.1 mouse_genomes_project 9 56324054 56327289 - MGP_CASTEiJ_P0092708 Commd4 protein_coding protein_coding MGP_CASTEiJ_T0094639.1 MGP_CASTEiJ_G0034275.1 mouse_genomes_project 9 108902325 108954756 + MGP_CASTEiJ_P0094639 Ip6k1 protein_coding protein_coding MGP_CASTEiJ_T0094640.1 MGP_CASTEiJ_G0034275.1 mouse_genomes_project 9 108902453 108950821 + MGP_CASTEiJ_P0094640 Ip6k1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094641.1 MGP_CASTEiJ_G0034275.1 mouse_genomes_project 9 108902458 108951684 + Ip6k1 protein_coding processed_transcript MGP_CASTEiJ_T0094642.1 MGP_CASTEiJ_G0034275.1 mouse_genomes_project 9 108902467 108952082 + Ip6k1 protein_coding retained_intron MGP_CASTEiJ_T0094643.1 MGP_CASTEiJ_G0034275.1 mouse_genomes_project 9 108902470 108940095 + MGP_CASTEiJ_P0094643 Ip6k1 protein_coding protein_coding MGP_CASTEiJ_T0094644.1 MGP_CASTEiJ_G0034275.1 mouse_genomes_project 9 108902495 108946907 + MGP_CASTEiJ_P0094644 Ip6k1 protein_coding protein_coding MGP_CASTEiJ_T0094645.1 MGP_CASTEiJ_G0034275.1 mouse_genomes_project 9 108929793 108951580 + MGP_CASTEiJ_P0094645 Ip6k1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094646.1 MGP_CASTEiJ_G0034275.1 mouse_genomes_project 9 108929825 108937454 + Ip6k1 protein_coding processed_transcript MGP_CASTEiJ_T0094647.1 MGP_CASTEiJ_G0034275.1 mouse_genomes_project 9 108937422 108952116 + MGP_CASTEiJ_P0094647 Ip6k1 protein_coding protein_coding MGP_CASTEiJ_T0094648.1 MGP_CASTEiJ_G0034275.1 mouse_genomes_project 9 108950836 108951512 + MGP_CASTEiJ_P0094648 Ip6k1 protein_coding protein_coding MGP_CASTEiJ_T0009001.1 MGP_CASTEiJ_G0007250.1 mouse_genomes_project 9 42564993 42575840 - Gm10687 lincRNA lincRNA MGP_CASTEiJ_T0009073.1 MGP_CASTEiJ_G0007305.1 mouse_genomes_project 9 96702355 96704716 - BC043934 lincRNA lincRNA MGP_CASTEiJ_T0009074.1 MGP_CASTEiJ_G0007305.1 mouse_genomes_project 9 96702356 96704007 - BC043934 lincRNA lincRNA MGP_CASTEiJ_T0010763.1 MGP_CASTEiJ_G0008951.1 mouse_genomes_project 9 67117817 67117884 - Mir190a miRNA miRNA MGP_CASTEiJ_T0000313.1 MGP_CASTEiJ_G0000262.1 mouse_genomes_project 9 125036873 125036940 - mt-Tw Mt_tRNA Mt_tRNA MGP_CASTEiJ_T0094693.1 MGP_CASTEiJ_G0034283.1 mouse_genomes_project 9 109218469 109224057 + MGP_CASTEiJ_P0094693 Nicn1 protein_coding protein_coding MGP_CASTEiJ_T0094694.1 MGP_CASTEiJ_G0034283.1 mouse_genomes_project 9 109218484 109221108 + Nicn1 protein_coding retained_intron MGP_CASTEiJ_T0094695.1 MGP_CASTEiJ_G0034283.1 mouse_genomes_project 9 109218495 109221076 + Nicn1 protein_coding processed_transcript MGP_CASTEiJ_T0094696.1 MGP_CASTEiJ_G0034283.1 mouse_genomes_project 9 109221418 109222344 + Nicn1 protein_coding retained_intron MGP_CASTEiJ_T0100150.1 MGP_CASTEiJ_G0037063.1 mouse_genomes_project 9 85272680 85272844 + Gm26126 snRNA snRNA MGP_CASTEiJ_T0092998.1 MGP_CASTEiJ_G0033945.1 mouse_genomes_project 9 63956359 63994301 - MGP_CASTEiJ_P0092998 Dis3l protein_coding protein_coding MGP_CASTEiJ_T0092999.1 MGP_CASTEiJ_G0033945.1 mouse_genomes_project 9 63956359 63993629 - MGP_CASTEiJ_P0092999 Dis3l protein_coding protein_coding MGP_CASTEiJ_T0093000.1 MGP_CASTEiJ_G0033945.1 mouse_genomes_project 9 63956391 63994279 - MGP_CASTEiJ_P0093000 Dis3l protein_coding protein_coding MGP_CASTEiJ_T0093001.1 MGP_CASTEiJ_G0033945.1 mouse_genomes_project 9 63974265 63994304 - Dis3l protein_coding retained_intron MGP_CASTEiJ_T0093002.1 MGP_CASTEiJ_G0033945.1 mouse_genomes_project 9 63979967 63987663 - MGP_CASTEiJ_P0093002 Dis3l protein_coding protein_coding MGP_CASTEiJ_T0093003.1 MGP_CASTEiJ_G0033945.1 mouse_genomes_project 9 63987698 63993935 - Dis3l protein_coding processed_transcript MGP_CASTEiJ_T0093004.1 MGP_CASTEiJ_G0033945.1 mouse_genomes_project 9 63991325 63994391 - Dis3l protein_coding retained_intron MGP_CASTEiJ_T0095548.1 MGP_CASTEiJ_G0034468.1 mouse_genomes_project 9 125551022 125613463 - Slc6a20b protein_coding retained_intron MGP_CASTEiJ_T0095549.1 MGP_CASTEiJ_G0034468.1 mouse_genomes_project 9 125551025 125613463 - MGP_CASTEiJ_P0095549 Slc6a20b protein_coding protein_coding MGP_CASTEiJ_T0095550.1 MGP_CASTEiJ_G0034468.1 mouse_genomes_project 9 125552026 125613463 - Slc6a20b protein_coding processed_transcript MGP_CASTEiJ_T0093391.1 MGP_CASTEiJ_G0034032.1 mouse_genomes_project 9 73290980 73303224 + MGP_CASTEiJ_P0093391 Rsl24d1 protein_coding protein_coding MGP_CASTEiJ_T0093392.1 MGP_CASTEiJ_G0034032.1 mouse_genomes_project 9 73291002 73303833 + MGP_CASTEiJ_P0093392 Rsl24d1 protein_coding protein_coding MGP_CASTEiJ_T0093393.1 MGP_CASTEiJ_G0034032.1 mouse_genomes_project 9 73291057 73303081 + MGP_CASTEiJ_P0093393 Rsl24d1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093394.1 MGP_CASTEiJ_G0034032.1 mouse_genomes_project 9 73292723 73302894 + MGP_CASTEiJ_P0093394 Rsl24d1 protein_coding protein_coding MGP_CASTEiJ_T0095444.1 MGP_CASTEiJ_G0034431.1 mouse_genomes_project 9 123370917 123376739 - MGP_CASTEiJ_P0095444 Cck protein_coding protein_coding MGP_CASTEiJ_T0094359.1 MGP_CASTEiJ_G0034233.1 mouse_genomes_project 9 107396454 107398965 - MGP_CASTEiJ_P0094359 Iqcf4 protein_coding protein_coding MGP_CASTEiJ_T0100139.1 MGP_CASTEiJ_G0037052.1 mouse_genomes_project 9 70557668 70557775 - Gm23730 snRNA snRNA MGP_CASTEiJ_T0005322.1 MGP_CASTEiJ_G0004511.1 mouse_genomes_project 9 66654433 66658673 - BC050972 antisense antisense MGP_CASTEiJ_T0005323.1 MGP_CASTEiJ_G0004511.1 mouse_genomes_project 9 66654666 66658373 - BC050972 antisense antisense MGP_CASTEiJ_T0005324.1 MGP_CASTEiJ_G0004511.1 mouse_genomes_project 9 66654695 66660173 - BC050972 antisense antisense MGP_CASTEiJ_T0002336.1 MGP_CASTEiJ_G0002253.1 mouse_genomes_project 9 91425280 91428995 - TEC TEC MGP_CASTEiJ_T0091857.1 MGP_CASTEiJ_G0033542.1 mouse_genomes_project 9 33480625 33490241 - MGP_CASTEiJ_P0091857 Hyls1 protein_coding protein_coding MGP_CASTEiJ_T0091858.1 MGP_CASTEiJ_G0033542.1 mouse_genomes_project 9 33484281 33489940 - Hyls1 protein_coding retained_intron MGP_CASTEiJ_T0101666.1 MGP_CASTEiJ_G0038500.1 mouse_genomes_project 9 117155 118324 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0009064.1 MGP_CASTEiJ_G0007300.1 mouse_genomes_project 9 92430778 92433942 - Gm29139 lincRNA lincRNA MGP_CASTEiJ_T0091616.1 MGP_CASTEiJ_G0033464.1 mouse_genomes_project 9 19112961 19142512 + MGP_CASTEiJ_P0091616 Ldlr protein_coding protein_coding MGP_CASTEiJ_T0101387.1 MGP_CASTEiJ_G0038300.1 mouse_genomes_project 9 65734316 65734448 - Gm22657 snoRNA snoRNA MGP_CASTEiJ_T0095579.1 MGP_CASTEiJ_G0034479.1 mouse_genomes_project 9 126064623 126070157 + MGP_CASTEiJ_P0095579 Ccr5 protein_coding protein_coding MGP_CASTEiJ_T0095580.1 MGP_CASTEiJ_G0034479.1 mouse_genomes_project 9 126064653 126068242 + Ccr5 protein_coding processed_transcript MGP_CASTEiJ_T0095581.1 MGP_CASTEiJ_G0034479.1 mouse_genomes_project 9 126064653 126074878 + MGP_CASTEiJ_P0095581 Ccr5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095582.1 MGP_CASTEiJ_G0034479.1 mouse_genomes_project 9 126064661 126067706 + MGP_CASTEiJ_P0095582 Ccr5 protein_coding protein_coding MGP_CASTEiJ_T0095583.1 MGP_CASTEiJ_G0034479.1 mouse_genomes_project 9 126069658 126073227 + Ccr5 protein_coding processed_transcript MGP_CASTEiJ_T0095584.1 MGP_CASTEiJ_G0034479.1 mouse_genomes_project 9 126071724 126091404 + Ccr5 protein_coding processed_transcript MGP_CASTEiJ_T0093023.1 MGP_CASTEiJ_G0033948.1 mouse_genomes_project 9 64491406 64607929 + MGP_CASTEiJ_P0093023 Dennd4a protein_coding protein_coding MGP_CASTEiJ_T0093744.1 MGP_CASTEiJ_G0034111.1 mouse_genomes_project 9 89630514 89673896 - MGP_CASTEiJ_P0093744 AF529169 protein_coding protein_coding MGP_CASTEiJ_T0093745.1 MGP_CASTEiJ_G0034111.1 mouse_genomes_project 9 89635574 89652010 - MGP_CASTEiJ_P0093745 AF529169 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092196.1 MGP_CASTEiJ_G0033706.1 mouse_genomes_project 9 42777467 42785668 + MGP_CASTEiJ_P0092196 Dpagt1 protein_coding protein_coding MGP_CASTEiJ_T0015469.1 MGP_CASTEiJ_G0013632.1 mouse_genomes_project 9 77187452 77187750 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092012.1 MGP_CASTEiJ_G0033621.1 mouse_genomes_project 9 36876313 36889132 + MGP_CASTEiJ_P0092012 Olfr924 protein_coding protein_coding MGP_CASTEiJ_T0100132.1 MGP_CASTEiJ_G0037045.1 mouse_genomes_project 9 64927856 64927972 - Rnu5g snRNA snRNA MGP_CASTEiJ_T0015445.1 MGP_CASTEiJ_G0013608.1 mouse_genomes_project 9 59147465 59147947 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0094654.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108957432 108988880 - MGP_CASTEiJ_P0094654 Rnf123 protein_coding protein_coding MGP_CASTEiJ_T0094655.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108957570 108984857 - MGP_CASTEiJ_P0094655 Rnf123 protein_coding protein_coding MGP_CASTEiJ_T0094656.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108957575 108985293 - Rnf123 protein_coding retained_intron MGP_CASTEiJ_T0094657.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108957575 108984931 - MGP_CASTEiJ_P0094657 Rnf123 protein_coding protein_coding MGP_CASTEiJ_T0094658.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108957575 108984857 - MGP_CASTEiJ_P0094658 Rnf123 protein_coding protein_coding MGP_CASTEiJ_T0094659.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108957591 108958131 - Rnf123 protein_coding retained_intron MGP_CASTEiJ_T0094660.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108958125 108965649 - MGP_CASTEiJ_P0094660 Rnf123 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094661.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108958134 108984931 - MGP_CASTEiJ_P0094661 Rnf123 protein_coding protein_coding MGP_CASTEiJ_T0094662.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108958142 108958600 - Rnf123 protein_coding retained_intron MGP_CASTEiJ_T0094664.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108961799 108985281 - Rnf123 protein_coding retained_intron MGP_CASTEiJ_T0094665.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108961966 108962940 - Rnf123 protein_coding retained_intron MGP_CASTEiJ_T0094666.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108962460 108965684 - MGP_CASTEiJ_P0094666 Rnf123 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094667.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108964068 108967908 - Rnf123 protein_coding retained_intron MGP_CASTEiJ_T0094668.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108977088 108983836 - MGP_CASTEiJ_P0094668 Rnf123 protein_coding protein_coding MGP_CASTEiJ_T0094669.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108977147 108984861 - MGP_CASTEiJ_P0094669 Rnf123 protein_coding protein_coding MGP_CASTEiJ_T0094670.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108977374 108984822 - MGP_CASTEiJ_P0094670 Rnf123 protein_coding protein_coding MGP_CASTEiJ_T0094671.1 MGP_CASTEiJ_G0034277.1 mouse_genomes_project 9 108983288 108988878 - MGP_CASTEiJ_P0094671 Rnf123 protein_coding protein_coding MGP_CASTEiJ_T0002303.1 MGP_CASTEiJ_G0002221.1 mouse_genomes_project 9 72830958 72832491 + TEC TEC MGP_CASTEiJ_T0091463.1 MGP_CASTEiJ_G0033412.1 mouse_genomes_project 9 17193477 17194512 - MGP_CASTEiJ_P0091463 Olfr862 protein_coding protein_coding MGP_CASTEiJ_T0091521.1 MGP_CASTEiJ_G0033429.1 mouse_genomes_project 9 17976604 18040866 - MGP_CASTEiJ_P0091521 Olfm2 protein_coding protein_coding MGP_CASTEiJ_T0091522.1 MGP_CASTEiJ_G0033429.1 mouse_genomes_project 9 17976725 18039430 - MGP_CASTEiJ_P0091522 Olfm2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091351.1 MGP_CASTEiJ_G0033362.1 mouse_genomes_project 9 11735786 11745310 - MGP_CASTEiJ_P0091351 Piwil4 protein_coding protein_coding MGP_CASTEiJ_T0091352.1 MGP_CASTEiJ_G0033362.1 mouse_genomes_project 9 11741433 11785160 - MGP_CASTEiJ_P0091352 Piwil4 protein_coding protein_coding MGP_CASTEiJ_T0091353.1 MGP_CASTEiJ_G0033362.1 mouse_genomes_project 9 11741434 11760066 - MGP_CASTEiJ_P0091353 Piwil4 protein_coding protein_coding MGP_CASTEiJ_T0091354.1 MGP_CASTEiJ_G0033362.1 mouse_genomes_project 9 11742014 11785172 - MGP_CASTEiJ_P0091354 Piwil4 protein_coding protein_coding MGP_CASTEiJ_T0094745.1 MGP_CASTEiJ_G0034294.1 mouse_genomes_project 9 109415669 109416315 + MGP_CASTEiJ_P0094745 Lamb2 protein_coding protein_coding MGP_CASTEiJ_T0094746.1 MGP_CASTEiJ_G0034294.1 mouse_genomes_project 9 109415790 109426462 + MGP_CASTEiJ_P0094746 Lamb2 protein_coding protein_coding MGP_CASTEiJ_T0094747.1 MGP_CASTEiJ_G0034294.1 mouse_genomes_project 9 109415805 109416587 + MGP_CASTEiJ_P0094747 Lamb2 protein_coding protein_coding MGP_CASTEiJ_T0094748.1 MGP_CASTEiJ_G0034294.1 mouse_genomes_project 9 109415811 109416520 + MGP_CASTEiJ_P0094748 Lamb2 protein_coding protein_coding MGP_CASTEiJ_T0094749.1 MGP_CASTEiJ_G0034294.1 mouse_genomes_project 9 109415814 109416118 + Lamb2 protein_coding retained_intron MGP_CASTEiJ_T0094750.1 MGP_CASTEiJ_G0034294.1 mouse_genomes_project 9 109423749 109424603 + Lamb2 protein_coding retained_intron MGP_CASTEiJ_T0094751.1 MGP_CASTEiJ_G0034294.1 mouse_genomes_project 9 109424808 109425464 + Lamb2 protein_coding retained_intron MGP_CASTEiJ_T0002326.1 MGP_CASTEiJ_G0002243.1 mouse_genomes_project 9 87405394 87406556 - TEC TEC MGP_CASTEiJ_T0015543.1 MGP_CASTEiJ_G0013706.1 mouse_genomes_project 9 110935327 110935727 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017762.1 MGP_CASTEiJ_G0015050.1 mouse_genomes_project 9 38974184 38977553 - Gm16096 processed_transcript processed_transcript MGP_CASTEiJ_T0017763.1 MGP_CASTEiJ_G0015050.1 mouse_genomes_project 9 38974190 38976837 - Gm16096 processed_transcript processed_transcript MGP_CASTEiJ_T0005348.1 MGP_CASTEiJ_G0004529.1 mouse_genomes_project 9 95697282 95698601 + Gm28424 antisense antisense MGP_CASTEiJ_T0100147.1 MGP_CASTEiJ_G0037060.1 mouse_genomes_project 9 82996287 82996349 - Gm22836 snRNA snRNA MGP_CASTEiJ_T0009006.1 MGP_CASTEiJ_G0007254.1 mouse_genomes_project 9 45540499 45555291 + 2900052N01Rik lincRNA lincRNA MGP_CASTEiJ_T0009007.1 MGP_CASTEiJ_G0007254.1 mouse_genomes_project 9 45540609 45555291 + 2900052N01Rik lincRNA lincRNA MGP_CASTEiJ_T0009008.1 MGP_CASTEiJ_G0007254.1 mouse_genomes_project 9 45540633 45550477 + 2900052N01Rik lincRNA lincRNA MGP_CASTEiJ_T0015414.1 MGP_CASTEiJ_G0013577.1 mouse_genomes_project 9 11902720 11903527 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091716.1 MGP_CASTEiJ_G0033505.1 mouse_genomes_project 9 24385334 24432729 - MGP_CASTEiJ_P0091716 Glb1l3 protein_coding protein_coding MGP_CASTEiJ_T0009046.1 MGP_CASTEiJ_G0007286.1 mouse_genomes_project 9 80604631 80607112 - Gm17477 lincRNA lincRNA MGP_CASTEiJ_T0010756.1 MGP_CASTEiJ_G0008944.1 mouse_genomes_project 9 52348436 52348518 - Mir130c miRNA miRNA MGP_CASTEiJ_T0009083.1 MGP_CASTEiJ_G0007314.1 mouse_genomes_project 9 100892082 100893665 + Gm28166 lincRNA lincRNA MGP_CASTEiJ_T0009023.1 MGP_CASTEiJ_G0007267.1 mouse_genomes_project 9 62362564 62366088 + Gm26609 lincRNA lincRNA MGP_CASTEiJ_T0015523.1 MGP_CASTEiJ_G0013686.1 mouse_genomes_project 9 100359215 100360028 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008987.1 MGP_CASTEiJ_G0007238.1 mouse_genomes_project 9 31845322 31860806 + lincRNA lincRNA MGP_CASTEiJ_T0092516.1 MGP_CASTEiJ_G0033802.1 mouse_genomes_project 9 49956995 49960694 + MGP_CASTEiJ_P0092516 Btg4 protein_coding protein_coding MGP_CASTEiJ_T0101379.1 MGP_CASTEiJ_G0038292.1 mouse_genomes_project 9 52603316 52603445 + Gm22304 snoRNA snoRNA MGP_CASTEiJ_T0101354.1 MGP_CASTEiJ_G0038267.1 mouse_genomes_project 9 12411749 12411886 + Gm25791 snoRNA snoRNA MGP_CASTEiJ_T0100155.1 MGP_CASTEiJ_G0037068.1 mouse_genomes_project 9 91959064 91959169 + Gm26101 snRNA snRNA MGP_CASTEiJ_T0010758.1 MGP_CASTEiJ_G0008946.1 mouse_genomes_project 9 57492848 57492953 + Mir6385 miRNA miRNA MGP_CASTEiJ_T0092211.1 MGP_CASTEiJ_G0033712.1 mouse_genomes_project 9 42860162 42863571 - MGP_CASTEiJ_P0092211 Trappc4 protein_coding protein_coding MGP_CASTEiJ_T0093258.1 MGP_CASTEiJ_G0034011.1 mouse_genomes_project 9 71267271 71351208 + MGP_CASTEiJ_P0093258 Aldh1a2 protein_coding protein_coding MGP_CASTEiJ_T0093259.1 MGP_CASTEiJ_G0034011.1 mouse_genomes_project 9 71267296 71351207 + MGP_CASTEiJ_P0093259 Aldh1a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0094589.1 MGP_CASTEiJ_G0034267.1 mouse_genomes_project 9 108827376 108831375 + MGP_CASTEiJ_P0094589 Actl11 protein_coding protein_coding MGP_CASTEiJ_T0009100.1 MGP_CASTEiJ_G0007328.1 mouse_genomes_project 9 109924098 109924452 - Gm38004 lincRNA lincRNA MGP_CASTEiJ_T0093841.1 MGP_CASTEiJ_G0034133.1 mouse_genomes_project 9 95906798 95955952 - MGP_CASTEiJ_P0093841 Trpc1 protein_coding protein_coding MGP_CASTEiJ_T0093842.1 MGP_CASTEiJ_G0034133.1 mouse_genomes_project 9 95908343 95955952 - MGP_CASTEiJ_P0093842 Trpc1 protein_coding protein_coding MGP_CASTEiJ_T0093843.1 MGP_CASTEiJ_G0034133.1 mouse_genomes_project 9 95908343 95955952 - MGP_CASTEiJ_P0093843 Trpc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093844.1 MGP_CASTEiJ_G0034133.1 mouse_genomes_project 9 95908343 95955952 - MGP_CASTEiJ_P0093844 Trpc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093845.1 MGP_CASTEiJ_G0034133.1 mouse_genomes_project 9 95918508 95921646 - Trpc1 protein_coding retained_intron MGP_CASTEiJ_T0093846.1 MGP_CASTEiJ_G0034133.1 mouse_genomes_project 9 95924260 95935158 - MGP_CASTEiJ_P0093846 Trpc1 protein_coding protein_coding MGP_CASTEiJ_T0093847.1 MGP_CASTEiJ_G0034133.1 mouse_genomes_project 9 95954642 95955969 - Trpc1 protein_coding retained_intron MGP_CASTEiJ_T0095291.1 MGP_CASTEiJ_G0034389.1 mouse_genomes_project 9 117593062 117687598 - MGP_CASTEiJ_P0095291 Tgfbr2 protein_coding protein_coding MGP_CASTEiJ_T0095292.1 MGP_CASTEiJ_G0034389.1 mouse_genomes_project 9 117593062 117687598 - MGP_CASTEiJ_P0095292 Tgfbr2 protein_coding protein_coding MGP_CASTEiJ_T0094894.1 MGP_CASTEiJ_G0034312.1 mouse_genomes_project 9 109879788 109916408 + MGP_CASTEiJ_P0094894 Col7a1 protein_coding protein_coding MGP_CASTEiJ_T0094895.1 MGP_CASTEiJ_G0034312.1 mouse_genomes_project 9 109879947 109916412 + MGP_CASTEiJ_P0094895 Col7a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0094896.1 MGP_CASTEiJ_G0034312.1 mouse_genomes_project 9 109879947 109916408 + MGP_CASTEiJ_P0094896 Col7a1 protein_coding protein_coding MGP_CASTEiJ_T0094897.1 MGP_CASTEiJ_G0034312.1 mouse_genomes_project 9 109880689 109883357 + Col7a1 protein_coding retained_intron MGP_CASTEiJ_T0094898.1 MGP_CASTEiJ_G0034312.1 mouse_genomes_project 9 109895593 109896272 + Col7a1 protein_coding retained_intron MGP_CASTEiJ_T0094899.1 MGP_CASTEiJ_G0034312.1 mouse_genomes_project 9 109897622 109911828 + Col7a1 protein_coding retained_intron MGP_CASTEiJ_T0094900.1 MGP_CASTEiJ_G0034312.1 mouse_genomes_project 9 109906944 109908795 + Col7a1 protein_coding retained_intron MGP_CASTEiJ_T0094901.1 MGP_CASTEiJ_G0034312.1 mouse_genomes_project 9 109914187 109916037 + Col7a1 protein_coding retained_intron MGP_CASTEiJ_T0094902.1 MGP_CASTEiJ_G0034312.1 mouse_genomes_project 9 109914420 109915450 + Col7a1 protein_coding retained_intron MGP_CASTEiJ_T0002391.1 MGP_CASTEiJ_G0002308.1 mouse_genomes_project 9 111060499 111062107 + TEC TEC MGP_CASTEiJ_T0005400.1 MGP_CASTEiJ_G0004565.1 mouse_genomes_project 9 110024001 110027940 - Gm7628 antisense antisense MGP_CASTEiJ_T0093851.1 MGP_CASTEiJ_G0034135.1 mouse_genomes_project 9 96068383 96079101 + Atr protein_coding retained_intron MGP_CASTEiJ_T0093852.1 MGP_CASTEiJ_G0034135.1 mouse_genomes_project 9 96068383 96167768 + MGP_CASTEiJ_P0093852 Atr protein_coding protein_coding MGP_CASTEiJ_T0093853.1 MGP_CASTEiJ_G0034135.1 mouse_genomes_project 9 96068425 96117905 + Atr protein_coding retained_intron MGP_CASTEiJ_T0093854.1 MGP_CASTEiJ_G0034135.1 mouse_genomes_project 9 96068436 96074323 + Atr protein_coding retained_intron MGP_CASTEiJ_T0093855.1 MGP_CASTEiJ_G0034135.1 mouse_genomes_project 9 96068441 96072545 + Atr protein_coding retained_intron MGP_CASTEiJ_T0093856.1 MGP_CASTEiJ_G0034135.1 mouse_genomes_project 9 96068455 96080700 + Atr protein_coding retained_intron MGP_CASTEiJ_T0093857.1 MGP_CASTEiJ_G0034135.1 mouse_genomes_project 9 96068511 96167748 + MGP_CASTEiJ_P0093857 Atr protein_coding unknown_likely_coding MGP_CASTEiJ_T0093858.1 MGP_CASTEiJ_G0034135.1 mouse_genomes_project 9 96101937 96104286 + Atr protein_coding retained_intron MGP_CASTEiJ_T0093859.1 MGP_CASTEiJ_G0034135.1 mouse_genomes_project 9 96130480 96134629 + Atr protein_coding retained_intron MGP_CASTEiJ_T0093860.1 MGP_CASTEiJ_G0034135.1 mouse_genomes_project 9 96149527 96151310 + Atr protein_coding retained_intron MGP_CASTEiJ_T0093861.1 MGP_CASTEiJ_G0034135.1 mouse_genomes_project 9 96152674 96156466 + Atr protein_coding retained_intron MGP_CASTEiJ_T0092614.1 MGP_CASTEiJ_G0033842.1 mouse_genomes_project 9 54050314 54081953 - MGP_CASTEiJ_P0092614 Chrnb4 protein_coding protein_coding MGP_CASTEiJ_T0092129.1 MGP_CASTEiJ_G0033685.1 mouse_genomes_project 9 41311669 41459571 - MGP_CASTEiJ_P0092129 Arhgef12 protein_coding protein_coding MGP_CASTEiJ_T0092130.1 MGP_CASTEiJ_G0033685.1 mouse_genomes_project 9 41311670 41459339 - MGP_CASTEiJ_P0092130 Arhgef12 protein_coding protein_coding MGP_CASTEiJ_T0092042.1 MGP_CASTEiJ_G0033645.1 mouse_genomes_project 9 37842619 37843555 + MGP_CASTEiJ_P0092042 Olfr963 protein_coding protein_coding MGP_CASTEiJ_T0010754.1 MGP_CASTEiJ_G0008942.1 mouse_genomes_project 9 50995891 50995982 - Gm27686 miRNA miRNA MGP_CASTEiJ_T0009016.1 MGP_CASTEiJ_G0007262.1 mouse_genomes_project 9 57655703 57659405 + 1700072B07Rik lincRNA lincRNA MGP_CASTEiJ_T0092181.1 MGP_CASTEiJ_G0033700.1 mouse_genomes_project 9 42679215 42685700 + MGP_CASTEiJ_P0092181 Ccdc153 protein_coding protein_coding MGP_CASTEiJ_T0094938.1 MGP_CASTEiJ_G0034318.1 mouse_genomes_project 9 109989651 110003991 - MGP_CASTEiJ_P0094938 Atrip protein_coding protein_coding MGP_CASTEiJ_T0094939.1 MGP_CASTEiJ_G0034318.1 mouse_genomes_project 9 109989689 110003919 - MGP_CASTEiJ_P0094939 Atrip protein_coding protein_coding MGP_CASTEiJ_T0094940.1 MGP_CASTEiJ_G0034318.1 mouse_genomes_project 9 109989714 109992185 - Atrip protein_coding retained_intron MGP_CASTEiJ_T0094941.1 MGP_CASTEiJ_G0034318.1 mouse_genomes_project 9 109990565 109995285 - MGP_CASTEiJ_P0094941 Atrip protein_coding protein_coding MGP_CASTEiJ_T0094942.1 MGP_CASTEiJ_G0034318.1 mouse_genomes_project 9 109997359 109999403 - Atrip protein_coding retained_intron MGP_CASTEiJ_T0094943.1 MGP_CASTEiJ_G0034318.1 mouse_genomes_project 9 110001600 110003933 - Atrip protein_coding retained_intron MGP_CASTEiJ_T0095505.1 MGP_CASTEiJ_G0034450.1 mouse_genomes_project 9 124648080 124703549 + MGP_CASTEiJ_P0095505 Topaz1 protein_coding protein_coding MGP_CASTEiJ_T0015507.1 MGP_CASTEiJ_G0013670.1 mouse_genomes_project 9 94567854 94568426 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093136.1 MGP_CASTEiJ_G0033982.1 mouse_genomes_project 9 66559500 66614879 + MGP_CASTEiJ_P0093136 Car12 protein_coding protein_coding MGP_CASTEiJ_T0093137.1 MGP_CASTEiJ_G0033982.1 mouse_genomes_project 9 66559541 66602477 + Car12 protein_coding retained_intron MGP_CASTEiJ_T0093138.1 MGP_CASTEiJ_G0033982.1 mouse_genomes_project 9 66559542 66595919 + Car12 protein_coding retained_intron MGP_CASTEiJ_T0093139.1 MGP_CASTEiJ_G0033982.1 mouse_genomes_project 9 66559544 66614876 + MGP_CASTEiJ_P0093139 Car12 protein_coding protein_coding MGP_CASTEiJ_T0093140.1 MGP_CASTEiJ_G0033982.1 mouse_genomes_project 9 66595750 66612351 + MGP_CASTEiJ_P0093140 Car12 protein_coding protein_coding MGP_CASTEiJ_T0005297.1 MGP_CASTEiJ_G0004497.1 mouse_genomes_project 9 49311046 49332974 - Plet1os antisense antisense MGP_CASTEiJ_T0005298.1 MGP_CASTEiJ_G0004497.1 mouse_genomes_project 9 49311050 49329932 - Plet1os antisense antisense MGP_CASTEiJ_T0094799.1 MGP_CASTEiJ_G0034298.1 mouse_genomes_project 9 109505078 109510246 + MGP_CASTEiJ_P0094799 Impdh2 protein_coding protein_coding MGP_CASTEiJ_T0094800.1 MGP_CASTEiJ_G0034298.1 mouse_genomes_project 9 109505231 109508003 + MGP_CASTEiJ_P0094800 Impdh2 protein_coding protein_coding MGP_CASTEiJ_T0094801.1 MGP_CASTEiJ_G0034298.1 mouse_genomes_project 9 109505262 109506370 + Impdh2 protein_coding retained_intron MGP_CASTEiJ_T0094802.1 MGP_CASTEiJ_G0034298.1 mouse_genomes_project 9 109505272 109507039 + Impdh2 protein_coding retained_intron MGP_CASTEiJ_T0094803.1 MGP_CASTEiJ_G0034298.1 mouse_genomes_project 9 109507801 109510057 + MGP_CASTEiJ_P0094803 Impdh2 protein_coding protein_coding MGP_CASTEiJ_T0094804.1 MGP_CASTEiJ_G0034298.1 mouse_genomes_project 9 109507935 109508834 + Impdh2 protein_coding retained_intron MGP_CASTEiJ_T0094805.1 MGP_CASTEiJ_G0034298.1 mouse_genomes_project 9 109509862 109510231 + Impdh2 protein_coding retained_intron MGP_CASTEiJ_T0094806.1 MGP_CASTEiJ_G0034298.1 mouse_genomes_project 9 109509866 109510227 + Impdh2 protein_coding retained_intron MGP_CASTEiJ_T0091944.1 MGP_CASTEiJ_G0033570.1 mouse_genomes_project 9 35458984 35469262 + MGP_CASTEiJ_P0091944 Esam protein_coding protein_coding MGP_CASTEiJ_T0091945.1 MGP_CASTEiJ_G0033570.1 mouse_genomes_project 9 35459675 35468049 + MGP_CASTEiJ_P0091945 Esam protein_coding protein_coding MGP_CASTEiJ_T0091946.1 MGP_CASTEiJ_G0033570.1 mouse_genomes_project 9 35461147 35462553 + MGP_CASTEiJ_P0091946 Esam protein_coding protein_coding MGP_CASTEiJ_T0091947.1 MGP_CASTEiJ_G0033570.1 mouse_genomes_project 9 35461821 35465126 + MGP_CASTEiJ_P0091947 Esam protein_coding protein_coding MGP_CASTEiJ_T0091948.1 MGP_CASTEiJ_G0033570.1 mouse_genomes_project 9 35467186 35468436 + Esam protein_coding retained_intron MGP_CASTEiJ_T0005369.1 MGP_CASTEiJ_G0004541.1 mouse_genomes_project 9 99686106 99691807 - 4930422M22Rik antisense antisense MGP_CASTEiJ_T0095575.1 MGP_CASTEiJ_G0034478.1 mouse_genomes_project 9 126040215 126051826 + MGP_CASTEiJ_P0095575 Ccr2 protein_coding protein_coding MGP_CASTEiJ_T0095576.1 MGP_CASTEiJ_G0034478.1 mouse_genomes_project 9 126040444 126047423 + MGP_CASTEiJ_P0095576 Ccr2 protein_coding protein_coding MGP_CASTEiJ_T0095577.1 MGP_CASTEiJ_G0034478.1 mouse_genomes_project 9 126040469 126046833 + MGP_CASTEiJ_P0095577 Ccr2 protein_coding protein_coding MGP_CASTEiJ_T0095578.1 MGP_CASTEiJ_G0034478.1 mouse_genomes_project 9 126043908 126047423 + MGP_CASTEiJ_P0095578 Ccr2 protein_coding protein_coding MGP_CASTEiJ_T0092470.1 MGP_CASTEiJ_G0033795.1 mouse_genomes_project 9 49598774 49604408 - MGP_CASTEiJ_P0092470 1110032A03Rik protein_coding protein_coding MGP_CASTEiJ_T0092471.1 MGP_CASTEiJ_G0033795.1 mouse_genomes_project 9 49599277 49604077 - MGP_CASTEiJ_P0092471 1110032A03Rik protein_coding protein_coding MGP_CASTEiJ_T0092472.1 MGP_CASTEiJ_G0033795.1 mouse_genomes_project 9 49599652 49602055 - MGP_CASTEiJ_P0092472 1110032A03Rik protein_coding protein_coding MGP_CASTEiJ_T0092473.1 MGP_CASTEiJ_G0033795.1 mouse_genomes_project 9 49599676 49612056 - 1110032A03Rik protein_coding retained_intron MGP_CASTEiJ_T0092474.1 MGP_CASTEiJ_G0033795.1 mouse_genomes_project 9 49599679 49600513 - 1110032A03Rik protein_coding retained_intron MGP_CASTEiJ_T0092475.1 MGP_CASTEiJ_G0033795.1 mouse_genomes_project 9 49599806 49604116 - MGP_CASTEiJ_P0092475 1110032A03Rik protein_coding protein_coding MGP_CASTEiJ_T0092476.1 MGP_CASTEiJ_G0033795.1 mouse_genomes_project 9 49600649 49604054 - 1110032A03Rik protein_coding processed_transcript MGP_CASTEiJ_T0092477.1 MGP_CASTEiJ_G0033795.1 mouse_genomes_project 9 49600763 49604125 - 1110032A03Rik protein_coding processed_transcript MGP_CASTEiJ_T0092481.1 MGP_CASTEiJ_G0033795.1 mouse_genomes_project 9 49604549 49606902 - 1110032A03Rik protein_coding processed_transcript MGP_CASTEiJ_T0092666.1 MGP_CASTEiJ_G0033857.1 mouse_genomes_project 9 56007351 56042029 + MGP_CASTEiJ_P0092666 Cspg4 protein_coding protein_coding MGP_CASTEiJ_T0092667.1 MGP_CASTEiJ_G0033857.1 mouse_genomes_project 9 56007394 56041377 + MGP_CASTEiJ_P0092667 Cspg4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009081.1 MGP_CASTEiJ_G0007312.1 mouse_genomes_project 9 100437880 100450215 + 4930519F24Rik lincRNA lincRNA MGP_CASTEiJ_T0009047.1 MGP_CASTEiJ_G0007287.1 mouse_genomes_project 9 81690933 81713406 + Gm26713 lincRNA lincRNA MGP_CASTEiJ_T0095078.1 MGP_CASTEiJ_G0034340.1 mouse_genomes_project 9 111588267 111681323 + MGP_CASTEiJ_P0095078 Setd2 protein_coding protein_coding MGP_CASTEiJ_T0095079.1 MGP_CASTEiJ_G0034340.1 mouse_genomes_project 9 111603645 111681304 + MGP_CASTEiJ_P0095079 Setd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095080.1 MGP_CASTEiJ_G0034340.1 mouse_genomes_project 9 111606971 111621875 + MGP_CASTEiJ_P0095080 Setd2 protein_coding protein_coding MGP_CASTEiJ_T0095081.1 MGP_CASTEiJ_G0034340.1 mouse_genomes_project 9 111617049 111625004 + Setd2 protein_coding retained_intron MGP_CASTEiJ_T0095082.1 MGP_CASTEiJ_G0034340.1 mouse_genomes_project 9 111617131 111627734 + Setd2 protein_coding retained_intron MGP_CASTEiJ_T0095083.1 MGP_CASTEiJ_G0034340.1 mouse_genomes_project 9 111630630 111681297 + MGP_CASTEiJ_P0095083 Setd2 protein_coding protein_coding MGP_CASTEiJ_T0095084.1 MGP_CASTEiJ_G0034340.1 mouse_genomes_project 9 111630892 111657489 + MGP_CASTEiJ_P0095084 Setd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095085.1 MGP_CASTEiJ_G0034340.1 mouse_genomes_project 9 111657353 111668206 + Setd2 protein_coding retained_intron MGP_CASTEiJ_T0095086.1 MGP_CASTEiJ_G0034340.1 mouse_genomes_project 9 111665247 111680838 + MGP_CASTEiJ_P0095086 Setd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095087.1 MGP_CASTEiJ_G0034340.1 mouse_genomes_project 9 111680290 111681297 + Setd2 protein_coding retained_intron MGP_CASTEiJ_T0010755.1 MGP_CASTEiJ_G0008943.1 mouse_genomes_project 9 51007876 51007993 + Mir6244 miRNA miRNA MGP_CASTEiJ_T0000311.1 MGP_CASTEiJ_G0000260.1 mouse_genomes_project 9 125036732 125036801 + mt-Tn Mt_tRNA Mt_tRNA MGP_CASTEiJ_T0010729.1 MGP_CASTEiJ_G0008917.1 mouse_genomes_project 9 12409525 12409583 + Mir7650 miRNA miRNA MGP_CASTEiJ_T0092376.1 MGP_CASTEiJ_G0033761.1 mouse_genomes_project 9 46193178 46528754 + MGP_CASTEiJ_P0092376 Cadm1 protein_coding protein_coding MGP_CASTEiJ_T0092377.1 MGP_CASTEiJ_G0033761.1 mouse_genomes_project 9 46193216 46524648 + MGP_CASTEiJ_P0092377 Cadm1 protein_coding protein_coding MGP_CASTEiJ_T0092378.1 MGP_CASTEiJ_G0033761.1 mouse_genomes_project 9 46193249 46533038 + MGP_CASTEiJ_P0092378 Cadm1 protein_coding protein_coding MGP_CASTEiJ_T0092379.1 MGP_CASTEiJ_G0033761.1 mouse_genomes_project 9 46193262 46525090 + MGP_CASTEiJ_P0092379 Cadm1 protein_coding protein_coding MGP_CASTEiJ_T0092380.1 MGP_CASTEiJ_G0033761.1 mouse_genomes_project 9 46193262 46528749 + MGP_CASTEiJ_P0092380 Cadm1 protein_coding protein_coding MGP_CASTEiJ_T0092381.1 MGP_CASTEiJ_G0033761.1 mouse_genomes_project 9 46193357 46487732 + Cadm1 protein_coding retained_intron MGP_CASTEiJ_T0092382.1 MGP_CASTEiJ_G0033761.1 mouse_genomes_project 9 46193357 46461264 + Cadm1 protein_coding retained_intron MGP_CASTEiJ_T0092383.1 MGP_CASTEiJ_G0033761.1 mouse_genomes_project 9 46193378 46482693 + Cadm1 protein_coding processed_transcript MGP_CASTEiJ_T0092384.1 MGP_CASTEiJ_G0033761.1 mouse_genomes_project 9 46193378 46524451 + MGP_CASTEiJ_P0092384 Cadm1 protein_coding protein_coding MGP_CASTEiJ_T0092385.1 MGP_CASTEiJ_G0033761.1 mouse_genomes_project 9 46452544 46524525 + MGP_CASTEiJ_P0092385 Cadm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100137.1 MGP_CASTEiJ_G0037050.1 mouse_genomes_project 9 68381127 68381234 - Gm22169 snRNA snRNA MGP_CASTEiJ_T0091382.1 MGP_CASTEiJ_G0033370.1 mouse_genomes_project 9 12126024 12189978 - MGP_CASTEiJ_P0091382 Hephl1 protein_coding protein_coding MGP_CASTEiJ_T0091628.1 MGP_CASTEiJ_G0033470.1 mouse_genomes_project 9 19323526 19330159 - MGP_CASTEiJ_P0091628 Tmem205 protein_coding protein_coding MGP_CASTEiJ_T0091629.1 MGP_CASTEiJ_G0033470.1 mouse_genomes_project 9 19323526 19330159 - MGP_CASTEiJ_P0091629 Tmem205 protein_coding protein_coding MGP_CASTEiJ_T0100120.1 MGP_CASTEiJ_G0037033.1 mouse_genomes_project 9 43397250 43397368 + Gm26249 snRNA snRNA MGP_CASTEiJ_T0091210.1 MGP_CASTEiJ_G0033315.1 mouse_genomes_project 9 276488 331280 + MGP_CASTEiJ_P0091210 Alkbh8 protein_coding protein_coding MGP_CASTEiJ_T0091211.1 MGP_CASTEiJ_G0033315.1 mouse_genomes_project 9 284400 330027 + MGP_CASTEiJ_P0091211 Alkbh8 protein_coding protein_coding MGP_CASTEiJ_T0091655.1 MGP_CASTEiJ_G0033484.1 mouse_genomes_project 9 19595659 19597167 + MGP_CASTEiJ_P0091655 Pigyl protein_coding protein_coding MGP_CASTEiJ_T0091656.1 MGP_CASTEiJ_G0033484.1 mouse_genomes_project 9 19595759 19597134 + MGP_CASTEiJ_P0091656 Pigyl protein_coding protein_coding MGP_CASTEiJ_T0094933.1 MGP_CASTEiJ_G0034316.1 mouse_genomes_project 9 109987832 110003938 - MGP_CASTEiJ_P0094933 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094935.1 MGP_CASTEiJ_G0034316.1 mouse_genomes_project 9 109987835 110003987 - protein_coding retained_intron MGP_CASTEiJ_T0094937.1 MGP_CASTEiJ_G0034316.1 mouse_genomes_project 9 109988369 109990243 - MGP_CASTEiJ_P0094937 protein_coding protein_coding MGP_CASTEiJ_T0005402.1 MGP_CASTEiJ_G0004567.1 mouse_genomes_project 9 110402337 110420375 + antisense antisense MGP_CASTEiJ_T0091361.1 MGP_CASTEiJ_G0033365.1 mouse_genomes_project 9 11831158 11833914 - MGP_CASTEiJ_P0091361 Ankrd49 protein_coding protein_coding MGP_CASTEiJ_T0094354.1 MGP_CASTEiJ_G0034231.1 mouse_genomes_project 9 107317466 107361045 - Iqcf3 protein_coding processed_transcript MGP_CASTEiJ_T0094356.1 MGP_CASTEiJ_G0034231.1 mouse_genomes_project 9 107359741 107389747 - MGP_CASTEiJ_P0094356 Iqcf3 protein_coding protein_coding MGP_CASTEiJ_T0094357.1 MGP_CASTEiJ_G0034231.1 mouse_genomes_project 9 107360150 107389745 - MGP_CASTEiJ_P0094357 Iqcf3 protein_coding protein_coding MGP_CASTEiJ_T0094358.1 MGP_CASTEiJ_G0034231.1 mouse_genomes_project 9 107378436 107389715 - MGP_CASTEiJ_P0094358 Iqcf3 protein_coding protein_coding MGP_CASTEiJ_T0002300.1 MGP_CASTEiJ_G0002218.1 mouse_genomes_project 9 72466209 72467138 + TEC TEC MGP_CASTEiJ_T0091870.1 MGP_CASTEiJ_G0033550.1 mouse_genomes_project 9 33696823 33698890 - MGP_CASTEiJ_P0091870 D730048I06Rik protein_coding protein_coding MGP_CASTEiJ_T0010732.1 MGP_CASTEiJ_G0008920.1 mouse_genomes_project 9 18241857 18241932 - Mir7081 miRNA miRNA MGP_CASTEiJ_T0092182.1 MGP_CASTEiJ_G0033701.1 mouse_genomes_project 9 42685705 42689847 - MGP_CASTEiJ_P0092182 Pdzd3 protein_coding protein_coding MGP_CASTEiJ_T0002340.1 MGP_CASTEiJ_G0002257.1 mouse_genomes_project 9 91875625 91876451 - TEC TEC MGP_CASTEiJ_T0008979.1 MGP_CASTEiJ_G0007230.1 mouse_genomes_project 9 19485059 19502320 + Gm16845 lincRNA lincRNA MGP_CASTEiJ_T0015516.1 MGP_CASTEiJ_G0013679.1 mouse_genomes_project 9 96859062 96859267 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009092.1 MGP_CASTEiJ_G0007322.1 mouse_genomes_project 9 106896200 106897499 - Gm29208 lincRNA lincRNA MGP_CASTEiJ_T0009097.1 MGP_CASTEiJ_G0007326.1 mouse_genomes_project 9 108457154 108457628 + Gm38150 lincRNA lincRNA MGP_CASTEiJ_T0091580.1 MGP_CASTEiJ_G0033456.1 mouse_genomes_project 9 18773103 18784208 + MGP_CASTEiJ_P0091580 Qtrt1 protein_coding protein_coding MGP_CASTEiJ_T0091221.1 MGP_CASTEiJ_G0033323.1 mouse_genomes_project 9 2273403 2289562 + MGP_CASTEiJ_P0091221 Casp4 protein_coding protein_coding MGP_CASTEiJ_T0091222.1 MGP_CASTEiJ_G0033323.1 mouse_genomes_project 9 2273424 2302145 + MGP_CASTEiJ_P0091222 Casp4 protein_coding protein_coding MGP_CASTEiJ_T0091223.1 MGP_CASTEiJ_G0033323.1 mouse_genomes_project 9 2273435 2295023 + Casp4 protein_coding retained_intron MGP_CASTEiJ_T0091224.1 MGP_CASTEiJ_G0033323.1 mouse_genomes_project 9 2273435 2294112 + MGP_CASTEiJ_P0091224 Casp4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091225.1 MGP_CASTEiJ_G0033323.1 mouse_genomes_project 9 2273440 2287571 + Casp4 protein_coding retained_intron MGP_CASTEiJ_T0091226.1 MGP_CASTEiJ_G0033323.1 mouse_genomes_project 9 2287229 2301452 + MGP_CASTEiJ_P0091226 Casp4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091227.1 MGP_CASTEiJ_G0033323.1 mouse_genomes_project 9 2289196 2292996 + Casp4 protein_coding retained_intron MGP_CASTEiJ_T0091727.1 MGP_CASTEiJ_G0033509.1 mouse_genomes_project 9 24570901 24598042 - MGP_CASTEiJ_P0091727 Vps26b protein_coding protein_coding MGP_CASTEiJ_T0092673.1 MGP_CASTEiJ_G0033862.1 mouse_genomes_project 9 56243975 56259553 + MGP_CASTEiJ_P0092673 Sin3a protein_coding protein_coding MGP_CASTEiJ_T0092674.1 MGP_CASTEiJ_G0033862.1 mouse_genomes_project 9 56247264 56297834 + MGP_CASTEiJ_P0092674 Sin3a protein_coding protein_coding MGP_CASTEiJ_T0092675.1 MGP_CASTEiJ_G0033862.1 mouse_genomes_project 9 56248302 56297832 + MGP_CASTEiJ_P0092675 Sin3a protein_coding protein_coding MGP_CASTEiJ_T0092676.1 MGP_CASTEiJ_G0033862.1 mouse_genomes_project 9 56248325 56297834 + MGP_CASTEiJ_P0092676 Sin3a protein_coding protein_coding MGP_CASTEiJ_T0092677.1 MGP_CASTEiJ_G0033862.1 mouse_genomes_project 9 56248554 56265490 + MGP_CASTEiJ_P0092677 Sin3a protein_coding protein_coding MGP_CASTEiJ_T0092678.1 MGP_CASTEiJ_G0033862.1 mouse_genomes_project 9 56253100 56297834 + MGP_CASTEiJ_P0092678 Sin3a protein_coding protein_coding MGP_CASTEiJ_T0092679.1 MGP_CASTEiJ_G0033862.1 mouse_genomes_project 9 56256628 56297834 + MGP_CASTEiJ_P0092679 Sin3a protein_coding protein_coding MGP_CASTEiJ_T0092680.1 MGP_CASTEiJ_G0033862.1 mouse_genomes_project 9 56265334 56267962 + Sin3a protein_coding retained_intron MGP_CASTEiJ_T0092681.1 MGP_CASTEiJ_G0033862.1 mouse_genomes_project 9 56282730 56294648 + Sin3a protein_coding retained_intron MGP_CASTEiJ_T0092198.1 MGP_CASTEiJ_G0033708.1 mouse_genomes_project 9 42790598 42799709 - MGP_CASTEiJ_P0092198 Hmbs protein_coding protein_coding MGP_CASTEiJ_T0092199.1 MGP_CASTEiJ_G0033708.1 mouse_genomes_project 9 42790599 42799895 - MGP_CASTEiJ_P0092199 Hmbs protein_coding protein_coding MGP_CASTEiJ_T0091636.1 MGP_CASTEiJ_G0033475.1 mouse_genomes_project 9 19380100 19398562 - MGP_CASTEiJ_P0091636 Rgl3 protein_coding protein_coding MGP_CASTEiJ_T0092518.1 MGP_CASTEiJ_G0033804.1 mouse_genomes_project 9 50116280 50124627 - MGP_CASTEiJ_P0092518 Gm684 protein_coding protein_coding MGP_CASTEiJ_T0015502.1 MGP_CASTEiJ_G0013665.1 mouse_genomes_project 9 92464942 92465475 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092291.1 MGP_CASTEiJ_G0033738.1 mouse_genomes_project 9 43689639 43721667 - MGP_CASTEiJ_P0092291 Tmprss4 protein_coding protein_coding MGP_CASTEiJ_T0092292.1 MGP_CASTEiJ_G0033738.1 mouse_genomes_project 9 43689640 43721665 - MGP_CASTEiJ_P0092292 Tmprss4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092293.1 MGP_CASTEiJ_G0033738.1 mouse_genomes_project 9 43690219 43721635 - Tmprss4 protein_coding processed_transcript MGP_CASTEiJ_T0092294.1 MGP_CASTEiJ_G0033738.1 mouse_genomes_project 9 43690219 43721551 - MGP_CASTEiJ_P0092294 Tmprss4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092295.1 MGP_CASTEiJ_G0033738.1 mouse_genomes_project 9 43691712 43697624 - Tmprss4 protein_coding retained_intron MGP_CASTEiJ_T0092015.1 MGP_CASTEiJ_G0033624.1 mouse_genomes_project 9 36999730 37000663 - MGP_CASTEiJ_P0092015 Olfr934 protein_coding protein_coding MGP_CASTEiJ_T0091345.1 MGP_CASTEiJ_G0033359.1 mouse_genomes_project 9 11481732 11523043 - MGP_CASTEiJ_P0091345 protein_coding protein_coding MGP_CASTEiJ_T0009024.1 MGP_CASTEiJ_G0007268.1 mouse_genomes_project 9 63672085 63676205 + 1110036E04Rik lincRNA lincRNA MGP_CASTEiJ_T0091767.1 MGP_CASTEiJ_G0033522.1 mouse_genomes_project 9 29035980 29084240 + MGP_CASTEiJ_P0091767 protein_coding protein_coding MGP_CASTEiJ_T0091768.1 MGP_CASTEiJ_G0033522.1 mouse_genomes_project 9 29068400 29084229 + protein_coding retained_intron MGP_CASTEiJ_T0091769.1 MGP_CASTEiJ_G0033522.1 mouse_genomes_project 9 29068707 29145880 + MGP_CASTEiJ_P0091769 protein_coding protein_coding MGP_CASTEiJ_T0091770.1 MGP_CASTEiJ_G0033522.1 mouse_genomes_project 9 29088798 29149092 + MGP_CASTEiJ_P0091770 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093651.1 MGP_CASTEiJ_G0034093.1 mouse_genomes_project 9 87006362 87179412 - MGP_CASTEiJ_P0093651 Ube2cbp protein_coding protein_coding MGP_CASTEiJ_T0093652.1 MGP_CASTEiJ_G0034093.1 mouse_genomes_project 9 87006798 87179412 - MGP_CASTEiJ_P0093652 Ube2cbp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094031.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101053923 101212136 + MGP_CASTEiJ_P0094031 Stag1 protein_coding protein_coding MGP_CASTEiJ_T0094032.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101103979 101438370 + MGP_CASTEiJ_P0094032 Stag1 protein_coding protein_coding MGP_CASTEiJ_T0094033.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101103979 101279821 + MGP_CASTEiJ_P0094033 Stag1 protein_coding protein_coding MGP_CASTEiJ_T0094034.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101104131 101213641 + Stag1 protein_coding retained_intron MGP_CASTEiJ_T0094035.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101104144 101181676 + Stag1 protein_coding retained_intron MGP_CASTEiJ_T0094036.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101104144 101181657 + Stag1 protein_coding retained_intron MGP_CASTEiJ_T0094037.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101104144 101438369 + MGP_CASTEiJ_P0094037 Stag1 protein_coding protein_coding MGP_CASTEiJ_T0094038.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101104147 101342459 + MGP_CASTEiJ_P0094038 Stag1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094039.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101104167 101437221 + MGP_CASTEiJ_P0094039 Stag1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094040.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101104299 101437228 + MGP_CASTEiJ_P0094040 Stag1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094041.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101104301 101251367 + MGP_CASTEiJ_P0094041 Stag1 protein_coding protein_coding MGP_CASTEiJ_T0094042.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101279733 101437238 + Stag1 protein_coding processed_transcript MGP_CASTEiJ_T0094043.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101308083 101320485 + Stag1 protein_coding retained_intron MGP_CASTEiJ_T0094044.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101316336 101436656 + MGP_CASTEiJ_P0094044 Stag1 protein_coding protein_coding MGP_CASTEiJ_T0094045.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101319463 101330198 + Stag1 protein_coding retained_intron MGP_CASTEiJ_T0094046.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101367354 101431462 + MGP_CASTEiJ_P0094046 Stag1 protein_coding protein_coding MGP_CASTEiJ_T0094047.1 MGP_CASTEiJ_G0034174.1 mouse_genomes_project 9 101435590 101439207 + Stag1 protein_coding retained_intron MGP_CASTEiJ_T0005419.1 MGP_CASTEiJ_G0004580.1 mouse_genomes_project 9 125571752 125573690 - Gm17120 antisense antisense MGP_CASTEiJ_T0015449.1 MGP_CASTEiJ_G0013612.1 mouse_genomes_project 9 65611098 65611615 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0094785.1 MGP_CASTEiJ_G0034297.1 mouse_genomes_project 9 109454336 109474952 + MGP_CASTEiJ_P0094785 Qrich1 protein_coding protein_coding MGP_CASTEiJ_T0094786.1 MGP_CASTEiJ_G0034297.1 mouse_genomes_project 9 109454617 109468357 + MGP_CASTEiJ_P0094786 Qrich1 protein_coding protein_coding MGP_CASTEiJ_T0094787.1 MGP_CASTEiJ_G0034297.1 mouse_genomes_project 9 109454633 109458480 + Qrich1 protein_coding processed_transcript MGP_CASTEiJ_T0094788.1 MGP_CASTEiJ_G0034297.1 mouse_genomes_project 9 109454633 109486375 + MGP_CASTEiJ_P0094788 Qrich1 protein_coding protein_coding MGP_CASTEiJ_T0094789.1 MGP_CASTEiJ_G0034297.1 mouse_genomes_project 9 109454640 109504781 + MGP_CASTEiJ_P0094789 Qrich1 protein_coding protein_coding MGP_CASTEiJ_T0094790.1 MGP_CASTEiJ_G0034297.1 mouse_genomes_project 9 109454644 109504956 + MGP_CASTEiJ_P0094790 Qrich1 protein_coding protein_coding MGP_CASTEiJ_T0094791.1 MGP_CASTEiJ_G0034297.1 mouse_genomes_project 9 109454682 109468343 + MGP_CASTEiJ_P0094791 Qrich1 protein_coding protein_coding MGP_CASTEiJ_T0094792.1 MGP_CASTEiJ_G0034297.1 mouse_genomes_project 9 109454685 109468383 + MGP_CASTEiJ_P0094792 Qrich1 protein_coding protein_coding MGP_CASTEiJ_T0094793.1 MGP_CASTEiJ_G0034297.1 mouse_genomes_project 9 109454686 109486142 + MGP_CASTEiJ_P0094793 Qrich1 protein_coding protein_coding MGP_CASTEiJ_T0094794.1 MGP_CASTEiJ_G0034297.1 mouse_genomes_project 9 109457289 109470121 + Qrich1 protein_coding retained_intron MGP_CASTEiJ_T0094795.1 MGP_CASTEiJ_G0034297.1 mouse_genomes_project 9 109457313 109468379 + MGP_CASTEiJ_P0094795 Qrich1 protein_coding protein_coding MGP_CASTEiJ_T0094796.1 MGP_CASTEiJ_G0034297.1 mouse_genomes_project 9 109467895 109474702 + MGP_CASTEiJ_P0094796 Qrich1 protein_coding protein_coding MGP_CASTEiJ_T0094797.1 MGP_CASTEiJ_G0034297.1 mouse_genomes_project 9 109500177 109503256 + Qrich1 protein_coding retained_intron MGP_CASTEiJ_T0094798.1 MGP_CASTEiJ_G0034297.1 mouse_genomes_project 9 109500515 109503086 + Qrich1 protein_coding retained_intron MGP_CASTEiJ_T0002292.1 MGP_CASTEiJ_G0002210.1 mouse_genomes_project 9 71977424 71980133 - TEC TEC MGP_CASTEiJ_T0093085.1 MGP_CASTEiJ_G0033973.1 mouse_genomes_project 9 65694510 65828024 + MGP_CASTEiJ_P0093085 Csnk1g1 protein_coding protein_coding MGP_CASTEiJ_T0093086.1 MGP_CASTEiJ_G0033973.1 mouse_genomes_project 9 65694560 65785501 + Csnk1g1 protein_coding retained_intron MGP_CASTEiJ_T0093087.1 MGP_CASTEiJ_G0033973.1 mouse_genomes_project 9 65694563 65831134 + MGP_CASTEiJ_P0093087 Csnk1g1 protein_coding protein_coding MGP_CASTEiJ_T0093088.1 MGP_CASTEiJ_G0033973.1 mouse_genomes_project 9 65694572 65831140 + MGP_CASTEiJ_P0093088 Csnk1g1 protein_coding protein_coding MGP_CASTEiJ_T0093089.1 MGP_CASTEiJ_G0033973.1 mouse_genomes_project 9 65694606 65740637 + MGP_CASTEiJ_P0093089 Csnk1g1 protein_coding protein_coding MGP_CASTEiJ_T0093090.1 MGP_CASTEiJ_G0033973.1 mouse_genomes_project 9 65694607 65823081 + MGP_CASTEiJ_P0093090 Csnk1g1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093091.1 MGP_CASTEiJ_G0033973.1 mouse_genomes_project 9 65694616 65757744 + Csnk1g1 protein_coding retained_intron MGP_CASTEiJ_T0093092.1 MGP_CASTEiJ_G0033973.1 mouse_genomes_project 9 65694674 65823890 + MGP_CASTEiJ_P0093092 Csnk1g1 protein_coding protein_coding MGP_CASTEiJ_T0093093.1 MGP_CASTEiJ_G0033973.1 mouse_genomes_project 9 65695019 65829193 + MGP_CASTEiJ_P0093093 Csnk1g1 protein_coding protein_coding MGP_CASTEiJ_T0093094.1 MGP_CASTEiJ_G0033973.1 mouse_genomes_project 9 65709839 65814307 + MGP_CASTEiJ_P0093094 Csnk1g1 protein_coding protein_coding MGP_CASTEiJ_T0093095.1 MGP_CASTEiJ_G0033973.1 mouse_genomes_project 9 65740325 65831130 + MGP_CASTEiJ_P0093095 Csnk1g1 protein_coding protein_coding MGP_CASTEiJ_T0093096.1 MGP_CASTEiJ_G0033973.1 mouse_genomes_project 9 65790720 65815763 + MGP_CASTEiJ_P0093096 Csnk1g1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093097.1 MGP_CASTEiJ_G0033973.1 mouse_genomes_project 9 65793079 65795996 + Csnk1g1 protein_coding retained_intron MGP_CASTEiJ_T0093098.1 MGP_CASTEiJ_G0033973.1 mouse_genomes_project 9 65793103 65823179 + MGP_CASTEiJ_P0093098 Csnk1g1 protein_coding protein_coding MGP_CASTEiJ_T0093099.1 MGP_CASTEiJ_G0033973.1 mouse_genomes_project 9 65793446 65814307 + MGP_CASTEiJ_P0093099 Csnk1g1 protein_coding protein_coding MGP_CASTEiJ_T0093100.1 MGP_CASTEiJ_G0033973.1 mouse_genomes_project 9 65819468 65823197 + Csnk1g1 protein_coding retained_intron MGP_CASTEiJ_T0017828.1 MGP_CASTEiJ_G0015073.1 mouse_genomes_project 9 108957573 108964493 + Gm20529 processed_transcript processed_transcript MGP_CASTEiJ_T0010731.1 MGP_CASTEiJ_G0008919.1 mouse_genomes_project 9 17324764 17324831 + Gm26231 miRNA miRNA MGP_CASTEiJ_T0092848.1 MGP_CASTEiJ_G0033910.1 mouse_genomes_project 9 59110234 59130419 - MGP_CASTEiJ_P0092848 Senp8 protein_coding protein_coding MGP_CASTEiJ_T0092849.1 MGP_CASTEiJ_G0033910.1 mouse_genomes_project 9 59110234 59130419 - MGP_CASTEiJ_P0092849 Senp8 protein_coding protein_coding MGP_CASTEiJ_T0091461.1 MGP_CASTEiJ_G0033410.1 mouse_genomes_project 9 16982903 16983686 + MGP_CASTEiJ_P0091461 protein_coding protein_coding MGP_CASTEiJ_T0094345.1 MGP_CASTEiJ_G0034229.1 mouse_genomes_project 9 107293191 107300249 + Rrp9 protein_coding processed_transcript MGP_CASTEiJ_T0094346.1 MGP_CASTEiJ_G0034229.1 mouse_genomes_project 9 107294501 107303868 + MGP_CASTEiJ_P0094346 Rrp9 protein_coding protein_coding MGP_CASTEiJ_T0094347.1 MGP_CASTEiJ_G0034229.1 mouse_genomes_project 9 107294550 107303860 + Rrp9 protein_coding retained_intron MGP_CASTEiJ_T0094348.1 MGP_CASTEiJ_G0034229.1 mouse_genomes_project 9 107294562 107295223 + Rrp9 protein_coding retained_intron MGP_CASTEiJ_T0094349.1 MGP_CASTEiJ_G0034229.1 mouse_genomes_project 9 107298056 107298904 + Rrp9 protein_coding retained_intron MGP_CASTEiJ_T0094350.1 MGP_CASTEiJ_G0034229.1 mouse_genomes_project 9 107302312 107303866 + MGP_CASTEiJ_P0094350 Rrp9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094351.1 MGP_CASTEiJ_G0034229.1 mouse_genomes_project 9 107302913 107303868 + Rrp9 protein_coding retained_intron MGP_CASTEiJ_T0005327.1 MGP_CASTEiJ_G0004514.1 mouse_genomes_project 9 69984442 69986016 - Gm28731 antisense antisense MGP_CASTEiJ_T0094253.1 MGP_CASTEiJ_G0034212.1 mouse_genomes_project 9 106438452 106584956 - MGP_CASTEiJ_P0094253 Col6a6 protein_coding protein_coding MGP_CASTEiJ_T0094254.1 MGP_CASTEiJ_G0034212.1 mouse_genomes_project 9 106440066 106584881 - MGP_CASTEiJ_P0094254 Col6a6 protein_coding protein_coding MGP_CASTEiJ_T0094255.1 MGP_CASTEiJ_G0034212.1 mouse_genomes_project 9 106529640 106565797 - MGP_CASTEiJ_P0094255 Col6a6 protein_coding protein_coding MGP_CASTEiJ_T0095263.1 MGP_CASTEiJ_G0034375.1 mouse_genomes_project 9 115763951 115845046 + MGP_CASTEiJ_P0095263 Glb1 protein_coding protein_coding MGP_CASTEiJ_T0095521.1 MGP_CASTEiJ_G0034459.1 mouse_genomes_project 9 124961359 124962455 + Tgm4 protein_coding processed_transcript MGP_CASTEiJ_T0095522.1 MGP_CASTEiJ_G0034459.1 mouse_genomes_project 9 124961361 124979422 + Tgm4 protein_coding processed_transcript MGP_CASTEiJ_T0095523.1 MGP_CASTEiJ_G0034459.1 mouse_genomes_project 9 124961361 124995807 + MGP_CASTEiJ_P0095523 Tgm4 protein_coding protein_coding MGP_CASTEiJ_T0095524.1 MGP_CASTEiJ_G0034459.1 mouse_genomes_project 9 124966484 124976975 + Tgm4 protein_coding retained_intron MGP_CASTEiJ_T0095264.1 MGP_CASTEiJ_G0034376.1 mouse_genomes_project 9 115763970 115775589 + MGP_CASTEiJ_P0095264 Tmppe protein_coding protein_coding MGP_CASTEiJ_T0015481.1 MGP_CASTEiJ_G0013644.1 mouse_genomes_project 9 83087639 83087961 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093181.1 MGP_CASTEiJ_G0033994.1 mouse_genomes_project 9 68571842 68583490 + Rora protein_coding processed_transcript MGP_CASTEiJ_T0093182.1 MGP_CASTEiJ_G0033994.1 mouse_genomes_project 9 68571842 69340363 + MGP_CASTEiJ_P0093182 Rora protein_coding protein_coding MGP_CASTEiJ_T0093183.1 MGP_CASTEiJ_G0033994.1 mouse_genomes_project 9 68571947 69314126 + MGP_CASTEiJ_P0093183 Rora protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093184.1 MGP_CASTEiJ_G0033994.1 mouse_genomes_project 9 68573360 68582704 + Rora protein_coding processed_transcript MGP_CASTEiJ_T0093185.1 MGP_CASTEiJ_G0033994.1 mouse_genomes_project 9 69136028 69192299 + Rora protein_coding processed_transcript MGP_CASTEiJ_T0093186.1 MGP_CASTEiJ_G0033994.1 mouse_genomes_project 9 69237164 69331926 + MGP_CASTEiJ_P0093186 Rora protein_coding protein_coding MGP_CASTEiJ_T0092062.1 MGP_CASTEiJ_G0033665.1 mouse_genomes_project 9 38274217 38275162 - MGP_CASTEiJ_P0092062 Olfr984 protein_coding protein_coding MGP_CASTEiJ_T0093746.1 MGP_CASTEiJ_G0034112.1 mouse_genomes_project 9 89755411 89766644 - MGP_CASTEiJ_P0093746 Tmed3 protein_coding protein_coding MGP_CASTEiJ_T0093747.1 MGP_CASTEiJ_G0034112.1 mouse_genomes_project 9 89764799 89766399 - Tmed3 protein_coding retained_intron MGP_CASTEiJ_T0093028.1 MGP_CASTEiJ_G0033952.1 mouse_genomes_project 9 64734014 64787632 + MGP_CASTEiJ_P0093028 Dpp8 protein_coding protein_coding MGP_CASTEiJ_T0093029.1 MGP_CASTEiJ_G0033952.1 mouse_genomes_project 9 64734278 64785976 + MGP_CASTEiJ_P0093029 Dpp8 protein_coding protein_coding MGP_CASTEiJ_T0005307.1 MGP_CASTEiJ_G0004502.1 mouse_genomes_project 9 54593993 54594997 - Gm17226 antisense antisense MGP_CASTEiJ_T0005308.1 MGP_CASTEiJ_G0004502.1 mouse_genomes_project 9 54594004 54595350 - Gm17226 antisense antisense MGP_CASTEiJ_T0093539.1 MGP_CASTEiJ_G0034075.1 mouse_genomes_project 9 80224690 80254433 - MGP_CASTEiJ_P0093539 Tmem30a protein_coding protein_coding MGP_CASTEiJ_T0093540.1 MGP_CASTEiJ_G0034075.1 mouse_genomes_project 9 80224690 80254510 - MGP_CASTEiJ_P0093540 Tmem30a protein_coding protein_coding MGP_CASTEiJ_T0093541.1 MGP_CASTEiJ_G0034075.1 mouse_genomes_project 9 80230511 80254433 - Tmem30a protein_coding retained_intron MGP_CASTEiJ_T0093542.1 MGP_CASTEiJ_G0034075.1 mouse_genomes_project 9 80234701 80254433 - Tmem30a protein_coding retained_intron MGP_CASTEiJ_T0101373.1 MGP_CASTEiJ_G0038286.1 mouse_genomes_project 9 39003775 39003865 + Snord14e snoRNA snoRNA MGP_CASTEiJ_T0095539.1 MGP_CASTEiJ_G0034462.1 mouse_genomes_project 9 125082397 125090139 + MGP_CASTEiJ_P0095539 Clec3b protein_coding protein_coding MGP_CASTEiJ_T0095313.1 MGP_CASTEiJ_G0034392.1 mouse_genomes_project 9 119684964 119759252 - MGP_CASTEiJ_P0095313 Cmc1 protein_coding protein_coding MGP_CASTEiJ_T0005399.1 MGP_CASTEiJ_G0004564.1 mouse_genomes_project 9 108913618 108920892 - Gm38134 antisense antisense MGP_CASTEiJ_T0015442.1 MGP_CASTEiJ_G0013605.1 mouse_genomes_project 9 58450461 58450995 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010737.1 MGP_CASTEiJ_G0008925.1 mouse_genomes_project 9 19209442 19209502 - Mir7083 miRNA miRNA MGP_CASTEiJ_T0100129.1 MGP_CASTEiJ_G0037042.1 mouse_genomes_project 9 62715070 62715177 + Gm25064 snRNA snRNA MGP_CASTEiJ_T0008981.1 MGP_CASTEiJ_G0007232.1 mouse_genomes_project 9 22731631 22732078 + Gm29375 lincRNA lincRNA MGP_CASTEiJ_T0015430.1 MGP_CASTEiJ_G0013593.1 mouse_genomes_project 9 34390841 34391040 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101380.1 MGP_CASTEiJ_G0038293.1 mouse_genomes_project 9 59833876 59833999 + Gm22099 snoRNA snoRNA MGP_CASTEiJ_T0091212.1 MGP_CASTEiJ_G0033316.1 mouse_genomes_project 9 348577 424416 + MGP_CASTEiJ_P0091212 Cwf19l2 protein_coding protein_coding MGP_CASTEiJ_T0091876.1 MGP_CASTEiJ_G0033556.1 mouse_genomes_project 9 34513280 34516130 - MGP_CASTEiJ_P0091876 A630095E13Rik protein_coding protein_coding MGP_CASTEiJ_T0091877.1 MGP_CASTEiJ_G0033556.1 mouse_genomes_project 9 34513280 34516130 - MGP_CASTEiJ_P0091877 A630095E13Rik protein_coding protein_coding MGP_CASTEiJ_T0091878.1 MGP_CASTEiJ_G0033556.1 mouse_genomes_project 9 34513282 34520893 - A630095E13Rik protein_coding retained_intron MGP_CASTEiJ_T0092014.1 MGP_CASTEiJ_G0033623.1 mouse_genomes_project 9 36989980 36993368 + MGP_CASTEiJ_P0092014 Olfr933 protein_coding protein_coding MGP_CASTEiJ_T0015457.1 MGP_CASTEiJ_G0013620.1 mouse_genomes_project 9 72735695 72736513 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092268.1 MGP_CASTEiJ_G0033728.1 mouse_genomes_project 9 43423370 43468508 - MGP_CASTEiJ_P0092268 Ube4a protein_coding protein_coding MGP_CASTEiJ_T0092269.1 MGP_CASTEiJ_G0033728.1 mouse_genomes_project 9 43426095 43468548 - MGP_CASTEiJ_P0092269 Ube4a protein_coding protein_coding MGP_CASTEiJ_T0092270.1 MGP_CASTEiJ_G0033728.1 mouse_genomes_project 9 43435843 43468467 - MGP_CASTEiJ_P0092270 Ube4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092271.1 MGP_CASTEiJ_G0033728.1 mouse_genomes_project 9 43435944 43468473 - MGP_CASTEiJ_P0092271 Ube4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092272.1 MGP_CASTEiJ_G0033728.1 mouse_genomes_project 9 43448984 43468505 - Ube4a protein_coding retained_intron MGP_CASTEiJ_T0092273.1 MGP_CASTEiJ_G0033728.1 mouse_genomes_project 9 43455871 43468502 - MGP_CASTEiJ_P0092273 Ube4a protein_coding protein_coding MGP_CASTEiJ_T0092274.1 MGP_CASTEiJ_G0033728.1 mouse_genomes_project 9 43459210 43468484 - Ube4a protein_coding retained_intron MGP_CASTEiJ_T0091539.1 MGP_CASTEiJ_G0033436.1 mouse_genomes_project 9 18234976 18280737 - MGP_CASTEiJ_P0091539 Dnmt1 protein_coding protein_coding MGP_CASTEiJ_T0009086.1 MGP_CASTEiJ_G0007317.1 mouse_genomes_project 9 103081222 103092923 + Gm29387 lincRNA lincRNA MGP_CASTEiJ_T0092117.1 MGP_CASTEiJ_G0033682.1 mouse_genomes_project 9 40656101 40670790 - Tecta protein_coding processed_transcript MGP_CASTEiJ_T0092118.1 MGP_CASTEiJ_G0033682.1 mouse_genomes_project 9 40656104 40731540 - MGP_CASTEiJ_P0092118 Tecta protein_coding protein_coding MGP_CASTEiJ_T0092119.1 MGP_CASTEiJ_G0033682.1 mouse_genomes_project 9 40656177 40731338 - MGP_CASTEiJ_P0092119 Tecta protein_coding protein_coding MGP_CASTEiJ_T0095475.1 MGP_CASTEiJ_G0034438.1 mouse_genomes_project 9 123676068 123682203 + MGP_CASTEiJ_P0095475 Klhl40 protein_coding protein_coding MGP_CASTEiJ_T0094299.1 MGP_CASTEiJ_G0034223.1 mouse_genomes_project 9 107244000 107249310 - MGP_CASTEiJ_P0094299 Acy1 protein_coding protein_coding MGP_CASTEiJ_T0094300.1 MGP_CASTEiJ_G0034223.1 mouse_genomes_project 9 107244003 107249168 - Acy1 protein_coding retained_intron MGP_CASTEiJ_T0094301.1 MGP_CASTEiJ_G0034223.1 mouse_genomes_project 9 107244009 107245713 - Acy1 protein_coding retained_intron MGP_CASTEiJ_T0094302.1 MGP_CASTEiJ_G0034223.1 mouse_genomes_project 9 107245718 107247372 - Acy1 protein_coding retained_intron MGP_CASTEiJ_T0094303.1 MGP_CASTEiJ_G0034223.1 mouse_genomes_project 9 107245951 107249193 - MGP_CASTEiJ_P0094303 Acy1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094304.1 MGP_CASTEiJ_G0034223.1 mouse_genomes_project 9 107246082 107249310 - MGP_CASTEiJ_P0094304 Acy1 protein_coding protein_coding MGP_CASTEiJ_T0094305.1 MGP_CASTEiJ_G0034223.1 mouse_genomes_project 9 107247887 107249178 - MGP_CASTEiJ_P0094305 Acy1 protein_coding protein_coding MGP_CASTEiJ_T0005321.1 MGP_CASTEiJ_G0004510.1 mouse_genomes_project 9 66413317 66423389 + Gm15563 antisense antisense MGP_CASTEiJ_T0091216.1 MGP_CASTEiJ_G0033320.1 mouse_genomes_project 9 1347222 1350548 + MGP_CASTEiJ_P0091216 Msantd4 protein_coding protein_coding MGP_CASTEiJ_T0100110.1 MGP_CASTEiJ_G0037023.1 mouse_genomes_project 9 17548989 17549818 - Gm25425 snRNA snRNA MGP_CASTEiJ_T0092565.1 MGP_CASTEiJ_G0033823.1 mouse_genomes_project 9 52857359 52857839 + MGP_CASTEiJ_P0092565 Gm16380 protein_coding protein_coding MGP_CASTEiJ_T0094530.1 MGP_CASTEiJ_G0034261.1 mouse_genomes_project 9 108540423 108545449 - MGP_CASTEiJ_P0094530 Gnat1 protein_coding protein_coding MGP_CASTEiJ_T0094531.1 MGP_CASTEiJ_G0034261.1 mouse_genomes_project 9 108540426 108545371 - Gnat1 protein_coding retained_intron MGP_CASTEiJ_T0094532.1 MGP_CASTEiJ_G0034261.1 mouse_genomes_project 9 108541242 108542401 - Gnat1 protein_coding retained_intron MGP_CASTEiJ_T0094533.1 MGP_CASTEiJ_G0034261.1 mouse_genomes_project 9 108542204 108544174 - Gnat1 protein_coding processed_transcript MGP_CASTEiJ_T0094534.1 MGP_CASTEiJ_G0034261.1 mouse_genomes_project 9 108542890 108545351 - Gnat1 protein_coding retained_intron MGP_CASTEiJ_T0091418.1 MGP_CASTEiJ_G0033381.1 mouse_genomes_project 9 15453312 15476159 + MGP_CASTEiJ_P0091418 Chordc1 protein_coding protein_coding MGP_CASTEiJ_T0091697.1 MGP_CASTEiJ_G0033500.1 mouse_genomes_project 9 22816998 22882336 + MGP_CASTEiJ_P0091697 Sept7 protein_coding protein_coding MGP_CASTEiJ_T0091698.1 MGP_CASTEiJ_G0033500.1 mouse_genomes_project 9 22816998 22882336 + MGP_CASTEiJ_P0091698 Sept7 protein_coding protein_coding MGP_CASTEiJ_T0092705.1 MGP_CASTEiJ_G0033864.1 mouse_genomes_project 9 56312242 56317569 - MGP_CASTEiJ_P0092705 Neil1 protein_coding protein_coding MGP_CASTEiJ_T0092706.1 MGP_CASTEiJ_G0033864.1 mouse_genomes_project 9 56312512 56317747 - MGP_CASTEiJ_P0092706 Neil1 protein_coding protein_coding MGP_CASTEiJ_T0092707.1 MGP_CASTEiJ_G0033864.1 mouse_genomes_project 9 56312698 56316474 - MGP_CASTEiJ_P0092707 Neil1 protein_coding protein_coding MGP_CASTEiJ_T0015545.1 MGP_CASTEiJ_G0013708.1 mouse_genomes_project 9 118623335 118623885 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005407.1 MGP_CASTEiJ_G0004572.1 mouse_genomes_project 9 116186664 116188828 + Gm9888 antisense antisense MGP_CASTEiJ_T0095341.1 MGP_CASTEiJ_G0034398.1 mouse_genomes_project 9 120751583 120776793 - MGP_CASTEiJ_P0095341 Plcd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095342.1 MGP_CASTEiJ_G0034398.1 mouse_genomes_project 9 120751605 120776756 - MGP_CASTEiJ_P0095342 Plcd1 protein_coding protein_coding MGP_CASTEiJ_T0094064.1 MGP_CASTEiJ_G0034179.1 mouse_genomes_project 9 102430218 102875562 - MGP_CASTEiJ_P0094064 Ephb1 protein_coding protein_coding MGP_CASTEiJ_T0094065.1 MGP_CASTEiJ_G0034179.1 mouse_genomes_project 9 102430661 102875562 - MGP_CASTEiJ_P0094065 Ephb1 protein_coding protein_coding MGP_CASTEiJ_T0094067.1 MGP_CASTEiJ_G0034179.1 mouse_genomes_project 9 102550972 102875562 - MGP_CASTEiJ_P0094067 Ephb1 protein_coding protein_coding MGP_CASTEiJ_T0095261.1 MGP_CASTEiJ_G0034374.1 mouse_genomes_project 9 115485535 115739145 - Crtap protein_coding retained_intron MGP_CASTEiJ_T0095262.1 MGP_CASTEiJ_G0034374.1 mouse_genomes_project 9 115485535 115753911 - MGP_CASTEiJ_P0095262 Crtap protein_coding protein_coding MGP_CASTEiJ_T0093267.1 MGP_CASTEiJ_G0034014.1 mouse_genomes_project 9 71565200 71658095 - Myzap protein_coding retained_intron MGP_CASTEiJ_T0093268.1 MGP_CASTEiJ_G0034014.1 mouse_genomes_project 9 71565200 71658095 - MGP_CASTEiJ_P0093268 Myzap protein_coding protein_coding MGP_CASTEiJ_T0093269.1 MGP_CASTEiJ_G0034014.1 mouse_genomes_project 9 71565914 71658000 - MGP_CASTEiJ_P0093269 Myzap protein_coding protein_coding MGP_CASTEiJ_T0093270.1 MGP_CASTEiJ_G0034014.1 mouse_genomes_project 9 71623104 71645540 - MGP_CASTEiJ_P0093270 Myzap protein_coding protein_coding MGP_CASTEiJ_T0093271.1 MGP_CASTEiJ_G0034014.1 mouse_genomes_project 9 71626551 71658077 - MGP_CASTEiJ_P0093271 Myzap protein_coding protein_coding MGP_CASTEiJ_T0015539.1 MGP_CASTEiJ_G0013702.1 mouse_genomes_project 9 108043455 108044724 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010735.1 MGP_CASTEiJ_G0008923.1 mouse_genomes_project 9 18873766 18873836 - Mir199a-1 miRNA miRNA MGP_CASTEiJ_T0100131.1 MGP_CASTEiJ_G0037044.1 mouse_genomes_project 9 64921612 64921728 - Gm25313 snRNA snRNA MGP_CASTEiJ_T0009068.1 MGP_CASTEiJ_G0007303.1 mouse_genomes_project 9 93118476 93128874 - 1700034K08Rik lincRNA lincRNA MGP_CASTEiJ_T0009069.1 MGP_CASTEiJ_G0007303.1 mouse_genomes_project 9 93118476 93146042 - 1700034K08Rik lincRNA lincRNA MGP_CASTEiJ_T0009070.1 MGP_CASTEiJ_G0007303.1 mouse_genomes_project 9 93118557 93146048 - 1700034K08Rik lincRNA lincRNA MGP_CASTEiJ_T0009071.1 MGP_CASTEiJ_G0007303.1 mouse_genomes_project 9 93140497 93146039 - 1700034K08Rik lincRNA lincRNA MGP_CASTEiJ_T0093946.1 MGP_CASTEiJ_G0034149.1 mouse_genomes_project 9 98770990 98794841 + MGP_CASTEiJ_P0093946 Rbp1 protein_coding protein_coding MGP_CASTEiJ_T0094281.1 MGP_CASTEiJ_G0034219.1 mouse_genomes_project 9 107008449 107012735 + MGP_CASTEiJ_P0094281 Tlr9 protein_coding protein_coding MGP_CASTEiJ_T0017747.1 MGP_CASTEiJ_G0015044.1 mouse_genomes_project 9 5022306 5033672 + Gm20416 processed_transcript processed_transcript MGP_CASTEiJ_T0005388.1 MGP_CASTEiJ_G0004556.1 mouse_genomes_project 9 108300356 108301450 - Gm17118 antisense antisense MGP_CASTEiJ_T0009105.1 MGP_CASTEiJ_G0007331.1 mouse_genomes_project 9 111718496 111719273 + Gm42470 lincRNA lincRNA MGP_CASTEiJ_T0093939.1 MGP_CASTEiJ_G0034147.1 mouse_genomes_project 9 97766283 98376290 - MGP_CASTEiJ_P0093939 Clstn2 protein_coding protein_coding MGP_CASTEiJ_T0093940.1 MGP_CASTEiJ_G0034147.1 mouse_genomes_project 9 97775144 98376092 - MGP_CASTEiJ_P0093940 Clstn2 protein_coding protein_coding MGP_CASTEiJ_T0091765.1 MGP_CASTEiJ_G0033521.1 mouse_genomes_project 9 28895307 28956190 - MGP_CASTEiJ_P0091765 Aplp2 protein_coding protein_coding MGP_CASTEiJ_T0091766.1 MGP_CASTEiJ_G0033521.1 mouse_genomes_project 9 28895307 28956190 - MGP_CASTEiJ_P0091766 Aplp2 protein_coding protein_coding MGP_CASTEiJ_T0093359.1 MGP_CASTEiJ_G0034025.1 mouse_genomes_project 9 73125857 73187439 + MGP_CASTEiJ_P0093359 Gm44503 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009108.1 MGP_CASTEiJ_G0007334.1 mouse_genomes_project 9 113389885 113391631 + 2900079G21Rik lincRNA lincRNA MGP_CASTEiJ_T0009109.1 MGP_CASTEiJ_G0007334.1 mouse_genomes_project 9 113389902 113446133 + 2900079G21Rik lincRNA lincRNA MGP_CASTEiJ_T0009110.1 MGP_CASTEiJ_G0007334.1 mouse_genomes_project 9 113389989 113391629 + 2900079G21Rik lincRNA lincRNA MGP_CASTEiJ_T0009111.1 MGP_CASTEiJ_G0007334.1 mouse_genomes_project 9 113412468 113518501 + 2900079G21Rik lincRNA lincRNA MGP_CASTEiJ_T0094320.1 MGP_CASTEiJ_G0034226.1 mouse_genomes_project 9 107264159 107271982 + MGP_CASTEiJ_P0094320 Pcbp4 protein_coding protein_coding MGP_CASTEiJ_T0094321.1 MGP_CASTEiJ_G0034226.1 mouse_genomes_project 9 107264275 107270966 + Pcbp4 protein_coding processed_transcript MGP_CASTEiJ_T0094322.1 MGP_CASTEiJ_G0034226.1 mouse_genomes_project 9 107264736 107265726 + Pcbp4 protein_coding processed_transcript MGP_CASTEiJ_T0094323.1 MGP_CASTEiJ_G0034226.1 mouse_genomes_project 9 107264781 107279597 + MGP_CASTEiJ_P0094323 Pcbp4 protein_coding protein_coding MGP_CASTEiJ_T0094324.1 MGP_CASTEiJ_G0034226.1 mouse_genomes_project 9 107264811 107271411 + Pcbp4 protein_coding retained_intron MGP_CASTEiJ_T0094325.1 MGP_CASTEiJ_G0034226.1 mouse_genomes_project 9 107264824 107272590 + MGP_CASTEiJ_P0094325 Pcbp4 protein_coding protein_coding MGP_CASTEiJ_T0094326.1 MGP_CASTEiJ_G0034226.1 mouse_genomes_project 9 107266573 107267329 + Pcbp4 protein_coding processed_transcript MGP_CASTEiJ_T0094327.1 MGP_CASTEiJ_G0034226.1 mouse_genomes_project 9 107266986 107271966 + MGP_CASTEiJ_P0094327 Pcbp4 protein_coding protein_coding MGP_CASTEiJ_T0094328.1 MGP_CASTEiJ_G0034226.1 mouse_genomes_project 9 107271285 107271756 + Pcbp4 protein_coding retained_intron MGP_CASTEiJ_T0094329.1 MGP_CASTEiJ_G0034226.1 mouse_genomes_project 9 107271547 107272225 + MGP_CASTEiJ_P0094329 Pcbp4 protein_coding protein_coding MGP_CASTEiJ_T0094330.1 MGP_CASTEiJ_G0034226.1 mouse_genomes_project 9 107271943 107279134 + MGP_CASTEiJ_P0094330 Pcbp4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094331.1 MGP_CASTEiJ_G0034226.1 mouse_genomes_project 9 107272160 107272827 + Pcbp4 protein_coding retained_intron MGP_CASTEiJ_T0094332.1 MGP_CASTEiJ_G0034226.1 mouse_genomes_project 9 107272185 107273612 + MGP_CASTEiJ_P0094332 Pcbp4 protein_coding protein_coding MGP_CASTEiJ_T0094333.1 MGP_CASTEiJ_G0034226.1 mouse_genomes_project 9 107272408 107273077 + Pcbp4 protein_coding processed_transcript MGP_CASTEiJ_T0094334.1 MGP_CASTEiJ_G0034226.1 mouse_genomes_project 9 107272535 107279280 + MGP_CASTEiJ_P0094334 Pcbp4 protein_coding protein_coding MGP_CASTEiJ_T0094335.1 MGP_CASTEiJ_G0034226.1 mouse_genomes_project 9 107272718 107273338 + Pcbp4 protein_coding retained_intron MGP_CASTEiJ_T0094516.1 MGP_CASTEiJ_G0034260.1 mouse_genomes_project 9 108516735 108525503 - MGP_CASTEiJ_P0094516 Slc38a3 protein_coding protein_coding MGP_CASTEiJ_T0094517.1 MGP_CASTEiJ_G0034260.1 mouse_genomes_project 9 108517269 108532896 - MGP_CASTEiJ_P0094517 Slc38a3 protein_coding protein_coding MGP_CASTEiJ_T0094518.1 MGP_CASTEiJ_G0034260.1 mouse_genomes_project 9 108517271 108534528 - Slc38a3 protein_coding retained_intron MGP_CASTEiJ_T0094519.1 MGP_CASTEiJ_G0034260.1 mouse_genomes_project 9 108517275 108532948 - MGP_CASTEiJ_P0094519 Slc38a3 protein_coding protein_coding MGP_CASTEiJ_T0094520.1 MGP_CASTEiJ_G0034260.1 mouse_genomes_project 9 108517275 108534493 - MGP_CASTEiJ_P0094520 Slc38a3 protein_coding protein_coding MGP_CASTEiJ_T0094521.1 MGP_CASTEiJ_G0034260.1 mouse_genomes_project 9 108520994 108522617 - MGP_CASTEiJ_P0094521 Slc38a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094522.1 MGP_CASTEiJ_G0034260.1 mouse_genomes_project 9 108521024 108522204 - MGP_CASTEiJ_P0094522 Slc38a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094523.1 MGP_CASTEiJ_G0034260.1 mouse_genomes_project 9 108521044 108521995 - Slc38a3 protein_coding retained_intron MGP_CASTEiJ_T0094524.1 MGP_CASTEiJ_G0034260.1 mouse_genomes_project 9 108522376 108523236 - Slc38a3 protein_coding retained_intron MGP_CASTEiJ_T0094525.1 MGP_CASTEiJ_G0034260.1 mouse_genomes_project 9 108522872 108525194 - Slc38a3 protein_coding processed_transcript MGP_CASTEiJ_T0094526.1 MGP_CASTEiJ_G0034260.1 mouse_genomes_project 9 108523604 108535038 - MGP_CASTEiJ_P0094526 Slc38a3 protein_coding protein_coding MGP_CASTEiJ_T0094527.1 MGP_CASTEiJ_G0034260.1 mouse_genomes_project 9 108523785 108534525 - MGP_CASTEiJ_P0094527 Slc38a3 protein_coding protein_coding MGP_CASTEiJ_T0094528.1 MGP_CASTEiJ_G0034260.1 mouse_genomes_project 9 108524610 108530941 - MGP_CASTEiJ_P0094528 Slc38a3 protein_coding protein_coding MGP_CASTEiJ_T0094529.1 MGP_CASTEiJ_G0034260.1 mouse_genomes_project 9 108525193 108534538 - Slc38a3 protein_coding processed_transcript MGP_CASTEiJ_T0005319.1 MGP_CASTEiJ_G0004509.1 mouse_genomes_project 9 66237315 66240212 - Gm28379 antisense antisense MGP_CASTEiJ_T0005320.1 MGP_CASTEiJ_G0004509.1 mouse_genomes_project 9 66237872 66273912 - Gm28379 antisense antisense MGP_CASTEiJ_T0091679.1 MGP_CASTEiJ_G0033493.1 mouse_genomes_project 9 20710960 20972386 + MGP_CASTEiJ_P0091679 Bmper protein_coding protein_coding MGP_CASTEiJ_T0091680.1 MGP_CASTEiJ_G0033493.1 mouse_genomes_project 9 20711497 20890510 + MGP_CASTEiJ_P0091680 Bmper protein_coding unknown_likely_coding MGP_CASTEiJ_T0002274.1 MGP_CASTEiJ_G0002192.1 mouse_genomes_project 9 18626318 18629013 + TEC TEC MGP_CASTEiJ_T0093124.1 MGP_CASTEiJ_G0033980.1 mouse_genomes_project 9 66336936 66343056 - MGP_CASTEiJ_P0093124 Fbxl22 protein_coding protein_coding MGP_CASTEiJ_T0017804.1 MGP_CASTEiJ_G0015065.1 mouse_genomes_project 9 86530953 86555881 - 9330154J02Rik processed_transcript antisense MGP_CASTEiJ_T0017805.1 MGP_CASTEiJ_G0015065.1 mouse_genomes_project 9 86530953 86555035 - 9330154J02Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017806.1 MGP_CASTEiJ_G0015065.1 mouse_genomes_project 9 86531014 86556073 - 9330154J02Rik processed_transcript antisense MGP_CASTEiJ_T0017807.1 MGP_CASTEiJ_G0015065.1 mouse_genomes_project 9 86532238 86555034 - 9330154J02Rik processed_transcript retained_intron MGP_CASTEiJ_T0092067.1 MGP_CASTEiJ_G0033670.1 mouse_genomes_project 9 38369928 38391009 + MGP_CASTEiJ_P0092067 Zfp202 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092068.1 MGP_CASTEiJ_G0033670.1 mouse_genomes_project 9 38369929 38390594 + MGP_CASTEiJ_P0092068 Zfp202 protein_coding protein_coding MGP_CASTEiJ_T0092069.1 MGP_CASTEiJ_G0033670.1 mouse_genomes_project 9 38369941 38390594 + MGP_CASTEiJ_P0092069 Zfp202 protein_coding protein_coding MGP_CASTEiJ_T0091811.1 MGP_CASTEiJ_G0033533.1 mouse_genomes_project 9 33023872 33074878 - MGP_CASTEiJ_P0091811 Dcps protein_coding protein_coding MGP_CASTEiJ_T0091812.1 MGP_CASTEiJ_G0033533.1 mouse_genomes_project 9 33025611 33074903 - MGP_CASTEiJ_P0091812 Dcps protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092140.1 MGP_CASTEiJ_G0033693.1 mouse_genomes_project 9 42473492 42479163 + MGP_CASTEiJ_P0092140 Thy1 protein_coding protein_coding MGP_CASTEiJ_T0002381.1 MGP_CASTEiJ_G0002298.1 mouse_genomes_project 9 108710028 108711009 - TEC TEC MGP_CASTEiJ_T0092598.1 MGP_CASTEiJ_G0033837.1 mouse_genomes_project 9 53935225 53963612 + MGP_CASTEiJ_P0092598 Hykk protein_coding protein_coding MGP_CASTEiJ_T0092599.1 MGP_CASTEiJ_G0033837.1 mouse_genomes_project 9 53935253 53943145 + Hykk protein_coding retained_intron MGP_CASTEiJ_T0092600.1 MGP_CASTEiJ_G0033837.1 mouse_genomes_project 9 53935254 53950564 + Hykk protein_coding retained_intron MGP_CASTEiJ_T0092601.1 MGP_CASTEiJ_G0033837.1 mouse_genomes_project 9 53935289 53937179 + Hykk protein_coding processed_transcript MGP_CASTEiJ_T0095540.1 MGP_CASTEiJ_G0034463.1 mouse_genomes_project 9 125103138 125145731 - MGP_CASTEiJ_P0095540 Cdcp1 protein_coding protein_coding MGP_CASTEiJ_T0095541.1 MGP_CASTEiJ_G0034463.1 mouse_genomes_project 9 125105371 125111432 - Cdcp1 protein_coding retained_intron MGP_CASTEiJ_T0095542.1 MGP_CASTEiJ_G0034463.1 mouse_genomes_project 9 125114052 125145692 - Cdcp1 protein_coding retained_intron MGP_CASTEiJ_T0093516.1 MGP_CASTEiJ_G0034066.1 mouse_genomes_project 9 78701556 78863321 + Mto1 protein_coding retained_intron MGP_CASTEiJ_T0093523.1 MGP_CASTEiJ_G0034066.1 mouse_genomes_project 9 78835344 78863640 + MGP_CASTEiJ_P0093523 Mto1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093524.1 MGP_CASTEiJ_G0034066.1 mouse_genomes_project 9 78835349 78837623 + Mto1 protein_coding retained_intron MGP_CASTEiJ_T0093525.1 MGP_CASTEiJ_G0034066.1 mouse_genomes_project 9 78835433 78863373 + MGP_CASTEiJ_P0093525 Mto1 protein_coding protein_coding MGP_CASTEiJ_T0093526.1 MGP_CASTEiJ_G0034066.1 mouse_genomes_project 9 78852945 78864837 + MGP_CASTEiJ_P0093526 Mto1 protein_coding protein_coding MGP_CASTEiJ_T0092492.1 MGP_CASTEiJ_G0033798.1 mouse_genomes_project 9 49683055 49699910 + Ppp2r1b protein_coding processed_transcript MGP_CASTEiJ_T0092493.1 MGP_CASTEiJ_G0033798.1 mouse_genomes_project 9 49695002 49732813 + MGP_CASTEiJ_P0092493 Ppp2r1b protein_coding protein_coding MGP_CASTEiJ_T0092494.1 MGP_CASTEiJ_G0033798.1 mouse_genomes_project 9 49695002 49731380 + MGP_CASTEiJ_P0092494 Ppp2r1b protein_coding protein_coding MGP_CASTEiJ_T0092495.1 MGP_CASTEiJ_G0033798.1 mouse_genomes_project 9 49695015 49720018 + MGP_CASTEiJ_P0092495 Ppp2r1b protein_coding protein_coding MGP_CASTEiJ_T0092496.1 MGP_CASTEiJ_G0033798.1 mouse_genomes_project 9 49695035 49718674 + MGP_CASTEiJ_P0092496 Ppp2r1b protein_coding protein_coding MGP_CASTEiJ_T0092497.1 MGP_CASTEiJ_G0033798.1 mouse_genomes_project 9 49695041 49731387 + MGP_CASTEiJ_P0092497 Ppp2r1b protein_coding protein_coding MGP_CASTEiJ_T0092498.1 MGP_CASTEiJ_G0033798.1 mouse_genomes_project 9 49695042 49731380 + MGP_CASTEiJ_P0092498 Ppp2r1b protein_coding protein_coding MGP_CASTEiJ_T0092499.1 MGP_CASTEiJ_G0033798.1 mouse_genomes_project 9 49695044 49718521 + MGP_CASTEiJ_P0092499 Ppp2r1b protein_coding protein_coding MGP_CASTEiJ_T0092500.1 MGP_CASTEiJ_G0033798.1 mouse_genomes_project 9 49695057 49718994 + MGP_CASTEiJ_P0092500 Ppp2r1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092501.1 MGP_CASTEiJ_G0033798.1 mouse_genomes_project 9 49695134 49719837 + MGP_CASTEiJ_P0092501 Ppp2r1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0092502.1 MGP_CASTEiJ_G0033798.1 mouse_genomes_project 9 49708199 49718616 + MGP_CASTEiJ_P0092502 Ppp2r1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092503.1 MGP_CASTEiJ_G0033798.1 mouse_genomes_project 9 49711675 49716649 + Ppp2r1b protein_coding processed_transcript MGP_CASTEiJ_T0092504.1 MGP_CASTEiJ_G0033798.1 mouse_genomes_project 9 49716671 49717723 + Ppp2r1b protein_coding retained_intron MGP_CASTEiJ_T0100166.1 MGP_CASTEiJ_G0037079.1 mouse_genomes_project 9 115979785 115979890 - Gm23232 snRNA snRNA MGP_CASTEiJ_T0094268.1 MGP_CASTEiJ_G0034216.1 mouse_genomes_project 9 106949148 106973199 + MGP_CASTEiJ_P0094268 Wdr82 protein_coding protein_coding MGP_CASTEiJ_T0094269.1 MGP_CASTEiJ_G0034216.1 mouse_genomes_project 9 106949149 106952202 + Wdr82 protein_coding retained_intron MGP_CASTEiJ_T0094270.1 MGP_CASTEiJ_G0034216.1 mouse_genomes_project 9 106954882 106968577 + MGP_CASTEiJ_P0094270 Wdr82 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093152.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66891519 66913598 - MGP_CASTEiJ_P0093152 Tpm1 protein_coding protein_coding MGP_CASTEiJ_T0093153.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66891519 66919093 - MGP_CASTEiJ_P0093153 Tpm1 protein_coding protein_coding MGP_CASTEiJ_T0093154.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66891519 66918954 - MGP_CASTEiJ_P0093154 Tpm1 protein_coding protein_coding MGP_CASTEiJ_T0093155.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66891521 66913493 - MGP_CASTEiJ_P0093155 Tpm1 protein_coding protein_coding MGP_CASTEiJ_T0093156.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66891522 66918896 - MGP_CASTEiJ_P0093156 Tpm1 protein_coding protein_coding MGP_CASTEiJ_T0093157.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66891522 66913653 - MGP_CASTEiJ_P0093157 Tpm1 protein_coding protein_coding MGP_CASTEiJ_T0093158.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66891535 66918873 - MGP_CASTEiJ_P0093158 Tpm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093159.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66891535 66918888 - MGP_CASTEiJ_P0093159 Tpm1 protein_coding protein_coding MGP_CASTEiJ_T0093160.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66891544 66918962 - MGP_CASTEiJ_P0093160 Tpm1 protein_coding protein_coding MGP_CASTEiJ_T0093161.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66891551 66913469 - MGP_CASTEiJ_P0093161 Tpm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093162.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66893251 66918859 - MGP_CASTEiJ_P0093162 Tpm1 protein_coding protein_coding MGP_CASTEiJ_T0093163.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66893253 66913397 - MGP_CASTEiJ_P0093163 Tpm1 protein_coding protein_coding MGP_CASTEiJ_T0093164.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66897548 66918951 - MGP_CASTEiJ_P0093164 Tpm1 protein_coding protein_coding MGP_CASTEiJ_T0093165.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66897548 66918900 - MGP_CASTEiJ_P0093165 Tpm1 protein_coding protein_coding MGP_CASTEiJ_T0093166.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66897622 66913532 - MGP_CASTEiJ_P0093166 Tpm1 protein_coding protein_coding MGP_CASTEiJ_T0093167.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66897645 66918830 - MGP_CASTEiJ_P0093167 Tpm1 protein_coding protein_coding MGP_CASTEiJ_T0093168.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66897704 66913421 - MGP_CASTEiJ_P0093168 Tpm1 protein_coding protein_coding MGP_CASTEiJ_T0093169.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66898504 66918949 - MGP_CASTEiJ_P0093169 Tpm1 protein_coding protein_coding MGP_CASTEiJ_T0093170.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66899576 66902453 - Tpm1 protein_coding processed_transcript MGP_CASTEiJ_T0093171.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66901847 66918805 - Tpm1 protein_coding retained_intron MGP_CASTEiJ_T0093172.1 MGP_CASTEiJ_G0033989.1 mouse_genomes_project 9 66903410 66918878 - Tpm1 protein_coding processed_transcript MGP_CASTEiJ_T0091662.1 MGP_CASTEiJ_G0033489.1 mouse_genomes_project 9 19789439 19852725 - MGP_CASTEiJ_P0091662 Anln protein_coding protein_coding MGP_CASTEiJ_T0095351.1 MGP_CASTEiJ_G0034400.1 mouse_genomes_project 9 120840793 120848950 - MGP_CASTEiJ_P0095351 Acaa1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0095352.1 MGP_CASTEiJ_G0034400.1 mouse_genomes_project 9 120840793 120848950 - MGP_CASTEiJ_P0095352 Acaa1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0095353.1 MGP_CASTEiJ_G0034400.1 mouse_genomes_project 9 120841132 120841800 - Acaa1b protein_coding retained_intron MGP_CASTEiJ_T0092549.1 MGP_CASTEiJ_G0033818.1 mouse_genomes_project 9 52538915 52571857 - MGP_CASTEiJ_P0092549 Acat1 protein_coding protein_coding MGP_CASTEiJ_T0092550.1 MGP_CASTEiJ_G0033818.1 mouse_genomes_project 9 52540875 52542147 - Acat1 protein_coding processed_transcript MGP_CASTEiJ_T0092551.1 MGP_CASTEiJ_G0033818.1 mouse_genomes_project 9 52557134 52571805 - Acat1 protein_coding retained_intron MGP_CASTEiJ_T0091258.1 MGP_CASTEiJ_G0033335.1 mouse_genomes_project 9 4602961 4617220 + MGP_CASTEiJ_P0091258 Mmp8 protein_coding protein_coding MGP_CASTEiJ_T0092467.1 MGP_CASTEiJ_G0033792.1 mouse_genomes_project 9 49573944 49580741 - MGP_CASTEiJ_P0092467 2310030G06Rik protein_coding protein_coding MGP_CASTEiJ_T0092728.1 MGP_CASTEiJ_G0033880.1 mouse_genomes_project 9 56938465 56944641 + MGP_CASTEiJ_P0092728 Cyp1a1 protein_coding protein_coding MGP_CASTEiJ_T0092138.1 MGP_CASTEiJ_G0033691.1 mouse_genomes_project 9 42142942 42207472 + MGP_CASTEiJ_P0092138 Nectin1 protein_coding protein_coding MGP_CASTEiJ_T0092582.1 MGP_CASTEiJ_G0033830.1 mouse_genomes_project 9 53531870 53547138 - MGP_CASTEiJ_P0092582 Cib2 protein_coding protein_coding MGP_CASTEiJ_T0005408.1 MGP_CASTEiJ_G0004573.1 mouse_genomes_project 9 116598861 116604467 - Gm4665 antisense antisense MGP_CASTEiJ_T0093959.1 MGP_CASTEiJ_G0034153.1 mouse_genomes_project 9 99215515 99217332 + MGP_CASTEiJ_P0093959 protein_coding protein_coding MGP_CASTEiJ_T0017758.1 MGP_CASTEiJ_G0015048.1 mouse_genomes_project 9 33857190 33858534 + processed_transcript lincRNA MGP_CASTEiJ_T0017759.1 MGP_CASTEiJ_G0015048.1 mouse_genomes_project 9 33857242 33858575 + processed_transcript lincRNA MGP_CASTEiJ_T0017788.1 MGP_CASTEiJ_G0015058.1 mouse_genomes_project 9 72506793 72515307 + Gm27230 processed_transcript lincRNA MGP_CASTEiJ_T0017789.1 MGP_CASTEiJ_G0015058.1 mouse_genomes_project 9 72506799 72513513 + Gm27230 processed_transcript lincRNA MGP_CASTEiJ_T0017790.1 MGP_CASTEiJ_G0015058.1 mouse_genomes_project 9 72514214 72514888 + Gm27230 processed_transcript retained_intron MGP_CASTEiJ_T0092433.1 MGP_CASTEiJ_G0033786.1 mouse_genomes_project 9 49427693 49435206 - MGP_CASTEiJ_P0092433 Sdhd protein_coding protein_coding MGP_CASTEiJ_T0015446.1 MGP_CASTEiJ_G0013609.1 mouse_genomes_project 9 59233384 59233661 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0094384.1 MGP_CASTEiJ_G0034240.1 mouse_genomes_project 9 107728916 107735444 - MGP_CASTEiJ_P0094384 Rbm15b protein_coding protein_coding MGP_CASTEiJ_T0094385.1 MGP_CASTEiJ_G0034240.1 mouse_genomes_project 9 107732745 107733614 - MGP_CASTEiJ_P0094385 Rbm15b protein_coding protein_coding MGP_CASTEiJ_T0009072.1 MGP_CASTEiJ_G0007304.1 mouse_genomes_project 9 94835206 94836816 - Gm29395 lincRNA lincRNA MGP_CASTEiJ_T0093063.1 MGP_CASTEiJ_G0033968.1 mouse_genomes_project 9 65382130 65414576 + MGP_CASTEiJ_P0093063 Rbpms2 protein_coding protein_coding MGP_CASTEiJ_T0093064.1 MGP_CASTEiJ_G0033968.1 mouse_genomes_project 9 65383008 65414553 + MGP_CASTEiJ_P0093064 Rbpms2 protein_coding protein_coding MGP_CASTEiJ_T0091427.1 MGP_CASTEiJ_G0033383.1 mouse_genomes_project 9 15568364 15574999 + MGP_CASTEiJ_P0091427 Ubtfl1 protein_coding protein_coding MGP_CASTEiJ_T0091428.1 MGP_CASTEiJ_G0033383.1 mouse_genomes_project 9 15568366 15574708 + MGP_CASTEiJ_P0091428 Ubtfl1 protein_coding protein_coding MGP_CASTEiJ_T0091429.1 MGP_CASTEiJ_G0033383.1 mouse_genomes_project 9 15572801 15574450 + MGP_CASTEiJ_P0091429 Ubtfl1 protein_coding protein_coding MGP_CASTEiJ_T0091372.1 MGP_CASTEiJ_G0033368.1 mouse_genomes_project 9 11956670 11974702 - MGP_CASTEiJ_P0091372 Izumo1r protein_coding protein_coding MGP_CASTEiJ_T0091373.1 MGP_CASTEiJ_G0033368.1 mouse_genomes_project 9 11963885 11974767 - MGP_CASTEiJ_P0091373 Izumo1r protein_coding protein_coding MGP_CASTEiJ_T0091374.1 MGP_CASTEiJ_G0033368.1 mouse_genomes_project 9 11970853 11973366 - MGP_CASTEiJ_P0091374 Izumo1r protein_coding protein_coding MGP_CASTEiJ_T0091375.1 MGP_CASTEiJ_G0033368.1 mouse_genomes_project 9 11970864 11974574 - MGP_CASTEiJ_P0091375 Izumo1r protein_coding protein_coding MGP_CASTEiJ_T0091376.1 MGP_CASTEiJ_G0033368.1 mouse_genomes_project 9 11971606 11974572 - MGP_CASTEiJ_P0091376 Izumo1r protein_coding protein_coding MGP_CASTEiJ_T0098420.1 MGP_CASTEiJ_G0035351.1 mouse_genomes_project 9 111056584 111059787 + pseudogene pseudogene MGP_CASTEiJ_T0095514.1 MGP_CASTEiJ_G0034454.1 mouse_genomes_project 9 124795656 124807611 + MGP_CASTEiJ_P0095514 Zkscan7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002297.1 MGP_CASTEiJ_G0002215.1 mouse_genomes_project 9 72126072 72128744 - TEC TEC MGP_CASTEiJ_T0093538.1 MGP_CASTEiJ_G0034074.1 mouse_genomes_project 9 80211134 80215612 - MGP_CASTEiJ_P0093538 Cox7a2 protein_coding protein_coding MGP_CASTEiJ_T0009080.1 MGP_CASTEiJ_G0007311.1 mouse_genomes_project 9 99758582 99760002 + Gm28087 lincRNA lincRNA MGP_CASTEiJ_T0093125.1 MGP_CASTEiJ_G0033981.1 mouse_genomes_project 9 66343099 66434516 - MGP_CASTEiJ_P0093125 Usp3 protein_coding protein_coding MGP_CASTEiJ_T0093126.1 MGP_CASTEiJ_G0033981.1 mouse_genomes_project 9 66344683 66434374 - MGP_CASTEiJ_P0093126 Usp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093127.1 MGP_CASTEiJ_G0033981.1 mouse_genomes_project 9 66345676 66434410 - MGP_CASTEiJ_P0093127 Usp3 protein_coding protein_coding MGP_CASTEiJ_T0093128.1 MGP_CASTEiJ_G0033981.1 mouse_genomes_project 9 66346326 66434332 - Usp3 protein_coding retained_intron MGP_CASTEiJ_T0093129.1 MGP_CASTEiJ_G0033981.1 mouse_genomes_project 9 66346524 66434380 - MGP_CASTEiJ_P0093129 Usp3 protein_coding protein_coding MGP_CASTEiJ_T0093130.1 MGP_CASTEiJ_G0033981.1 mouse_genomes_project 9 66346698 66348778 - Usp3 protein_coding retained_intron MGP_CASTEiJ_T0093131.1 MGP_CASTEiJ_G0033981.1 mouse_genomes_project 9 66346857 66349259 - Usp3 protein_coding retained_intron MGP_CASTEiJ_T0093132.1 MGP_CASTEiJ_G0033981.1 mouse_genomes_project 9 66356547 66360295 - Usp3 protein_coding retained_intron MGP_CASTEiJ_T0093133.1 MGP_CASTEiJ_G0033981.1 mouse_genomes_project 9 66356861 66369637 - Usp3 protein_coding processed_transcript MGP_CASTEiJ_T0093134.1 MGP_CASTEiJ_G0033981.1 mouse_genomes_project 9 66374752 66408068 - Usp3 protein_coding retained_intron MGP_CASTEiJ_T0093135.1 MGP_CASTEiJ_G0033981.1 mouse_genomes_project 9 66377158 66417359 - Usp3 protein_coding processed_transcript MGP_CASTEiJ_T0094914.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109969353 109987677 + MGP_CASTEiJ_P0094914 Shisa5 protein_coding protein_coding MGP_CASTEiJ_T0094915.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109969373 109987624 + MGP_CASTEiJ_P0094915 Shisa5 protein_coding protein_coding MGP_CASTEiJ_T0094916.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109969390 109987624 + Shisa5 protein_coding retained_intron MGP_CASTEiJ_T0094917.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109971195 109986643 + MGP_CASTEiJ_P0094917 Shisa5 protein_coding protein_coding MGP_CASTEiJ_T0094918.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109971396 109981288 + MGP_CASTEiJ_P0094918 Shisa5 protein_coding protein_coding MGP_CASTEiJ_T0094919.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109980993 109986855 + MGP_CASTEiJ_P0094919 Shisa5 protein_coding protein_coding MGP_CASTEiJ_T0094920.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109981052 109986274 + MGP_CASTEiJ_P0094920 Shisa5 protein_coding protein_coding MGP_CASTEiJ_T0094921.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109981056 109986924 + MGP_CASTEiJ_P0094921 Shisa5 protein_coding protein_coding MGP_CASTEiJ_T0094922.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109981077 109986248 + MGP_CASTEiJ_P0094922 Shisa5 protein_coding protein_coding MGP_CASTEiJ_T0094923.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109981095 109986913 + MGP_CASTEiJ_P0094923 Shisa5 protein_coding protein_coding MGP_CASTEiJ_T0094924.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109981097 109986307 + MGP_CASTEiJ_P0094924 Shisa5 protein_coding protein_coding MGP_CASTEiJ_T0094925.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109981099 109986627 + MGP_CASTEiJ_P0094925 Shisa5 protein_coding protein_coding MGP_CASTEiJ_T0094926.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109981108 109986270 + MGP_CASTEiJ_P0094926 Shisa5 protein_coding protein_coding MGP_CASTEiJ_T0094927.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109981332 109986758 + MGP_CASTEiJ_P0094927 Shisa5 protein_coding protein_coding MGP_CASTEiJ_T0094928.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109982765 109986598 + Shisa5 protein_coding processed_transcript MGP_CASTEiJ_T0094929.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109984769 109987107 + MGP_CASTEiJ_P0094929 Shisa5 protein_coding protein_coding MGP_CASTEiJ_T0094930.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109984854 109986447 + Shisa5 protein_coding processed_transcript MGP_CASTEiJ_T0094931.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109984918 109986387 + Shisa5 protein_coding processed_transcript MGP_CASTEiJ_T0094932.1 MGP_CASTEiJ_G0034315.1 mouse_genomes_project 9 109985835 109986371 + Shisa5 protein_coding retained_intron MGP_CASTEiJ_T0091264.1 MGP_CASTEiJ_G0033338.1 mouse_genomes_project 9 4749674 4758308 + MGP_CASTEiJ_P0091264 Mmp7 protein_coding protein_coding MGP_CASTEiJ_T0015440.1 MGP_CASTEiJ_G0013603.1 mouse_genomes_project 9 57093055 57093678 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091612.1 MGP_CASTEiJ_G0033463.1 mouse_genomes_project 9 19003146 19094609 + MGP_CASTEiJ_P0091612 Smarca4 protein_coding protein_coding MGP_CASTEiJ_T0091613.1 MGP_CASTEiJ_G0033463.1 mouse_genomes_project 9 19003146 19094622 + MGP_CASTEiJ_P0091613 Smarca4 protein_coding protein_coding MGP_CASTEiJ_T0091614.1 MGP_CASTEiJ_G0033463.1 mouse_genomes_project 9 19003242 19093770 + MGP_CASTEiJ_P0091614 Smarca4 protein_coding protein_coding MGP_CASTEiJ_T0091615.1 MGP_CASTEiJ_G0033463.1 mouse_genomes_project 9 19024432 19076094 + MGP_CASTEiJ_P0091615 Smarca4 protein_coding protein_coding MGP_CASTEiJ_T0092991.1 MGP_CASTEiJ_G0033941.1 mouse_genomes_project 9 63817518 63820898 + MGP_CASTEiJ_P0092991 Snapc5 protein_coding protein_coding MGP_CASTEiJ_T0091984.1 MGP_CASTEiJ_G0033599.1 mouse_genomes_project 9 36320375 36321371 + MGP_CASTEiJ_P0091984 Olfr250 protein_coding protein_coding MGP_CASTEiJ_T0100148.1 MGP_CASTEiJ_G0037061.1 mouse_genomes_project 9 83016021 83016118 - Gm24393 snRNA snRNA MGP_CASTEiJ_T0091464.1 MGP_CASTEiJ_G0033413.1 mouse_genomes_project 9 17233452 17240002 + MGP_CASTEiJ_P0091464 Olfr77 protein_coding protein_coding MGP_CASTEiJ_T0002319.1 MGP_CASTEiJ_G0002237.1 mouse_genomes_project 9 82582681 82583294 + TEC TEC MGP_CASTEiJ_T0098681.1 MGP_CASTEiJ_G0035612.1 mouse_genomes_project 9 103068000 103068112 + Gm25669 rRNA rRNA MGP_CASTEiJ_T0095247.1 MGP_CASTEiJ_G0034370.1 mouse_genomes_project 9 115003601 115202820 + MGP_CASTEiJ_P0095247 Clasp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095248.1 MGP_CASTEiJ_G0034370.1 mouse_genomes_project 9 115085498 115202828 + MGP_CASTEiJ_P0095248 Clasp2 protein_coding protein_coding MGP_CASTEiJ_T0095249.1 MGP_CASTEiJ_G0034370.1 mouse_genomes_project 9 115085498 115202828 + MGP_CASTEiJ_P0095249 Clasp2 protein_coding protein_coding MGP_CASTEiJ_T0095250.1 MGP_CASTEiJ_G0034370.1 mouse_genomes_project 9 115085512 115201287 + MGP_CASTEiJ_P0095250 Clasp2 protein_coding protein_coding MGP_CASTEiJ_T0092050.1 MGP_CASTEiJ_G0033653.1 mouse_genomes_project 9 38012334 38013107 + MGP_CASTEiJ_P0092050 protein_coding protein_coding MGP_CASTEiJ_T0091759.1 MGP_CASTEiJ_G0033519.1 mouse_genomes_project 9 28769129 28810576 + MGP_CASTEiJ_P0091759 Zbtb44 protein_coding protein_coding MGP_CASTEiJ_T0091760.1 MGP_CASTEiJ_G0033519.1 mouse_genomes_project 9 28794958 28810304 + MGP_CASTEiJ_P0091760 Zbtb44 protein_coding protein_coding MGP_CASTEiJ_T0015441.1 MGP_CASTEiJ_G0013604.1 mouse_genomes_project 9 57999076 57999244 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0094206.1 MGP_CASTEiJ_G0034207.1 mouse_genomes_project 9 105860257 105862013 - MGP_CASTEiJ_P0094206 1700080E11Rik protein_coding protein_coding MGP_CASTEiJ_T0094207.1 MGP_CASTEiJ_G0034207.1 mouse_genomes_project 9 105861232 105861997 - MGP_CASTEiJ_P0094207 1700080E11Rik protein_coding protein_coding MGP_CASTEiJ_T0002348.1 MGP_CASTEiJ_G0002265.1 mouse_genomes_project 9 99058846 99059361 - TEC TEC MGP_CASTEiJ_T0095274.1 MGP_CASTEiJ_G0034384.1 mouse_genomes_project 9 116196018 116256901 - MGP_CASTEiJ_P0095274 Cmtm8 protein_coding protein_coding MGP_CASTEiJ_T0091897.1 MGP_CASTEiJ_G0033560.1 mouse_genomes_project 9 34653675 34671529 - MGP_CASTEiJ_P0091897 Ei24 protein_coding protein_coding MGP_CASTEiJ_T0091898.1 MGP_CASTEiJ_G0033560.1 mouse_genomes_project 9 34653675 34671612 - MGP_CASTEiJ_P0091898 Ei24 protein_coding protein_coding MGP_CASTEiJ_T0091899.1 MGP_CASTEiJ_G0033560.1 mouse_genomes_project 9 34654390 34657712 - Ei24 protein_coding retained_intron MGP_CASTEiJ_T0091900.1 MGP_CASTEiJ_G0033560.1 mouse_genomes_project 9 34654690 34657217 - Ei24 protein_coding retained_intron MGP_CASTEiJ_T0091901.1 MGP_CASTEiJ_G0033560.1 mouse_genomes_project 9 34657280 34660474 - Ei24 protein_coding retained_intron MGP_CASTEiJ_T0091902.1 MGP_CASTEiJ_G0033560.1 mouse_genomes_project 9 34660065 34671276 - MGP_CASTEiJ_P0091902 Ei24 protein_coding protein_coding MGP_CASTEiJ_T0091903.1 MGP_CASTEiJ_G0033560.1 mouse_genomes_project 9 34660074 34664745 - MGP_CASTEiJ_P0091903 Ei24 protein_coding protein_coding MGP_CASTEiJ_T0091904.1 MGP_CASTEiJ_G0033560.1 mouse_genomes_project 9 34660983 34671617 - MGP_CASTEiJ_P0091904 Ei24 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092344.1 MGP_CASTEiJ_G0033751.1 mouse_genomes_project 9 44522949 44545009 - MGP_CASTEiJ_P0092344 Pafah1b2 protein_coding protein_coding MGP_CASTEiJ_T0092345.1 MGP_CASTEiJ_G0033751.1 mouse_genomes_project 9 44526157 44575494 - MGP_CASTEiJ_P0092345 Pafah1b2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092483.1 MGP_CASTEiJ_G0033797.1 mouse_genomes_project 9 49611554 49681292 + MGP_CASTEiJ_P0092483 Alg9 protein_coding protein_coding MGP_CASTEiJ_T0092484.1 MGP_CASTEiJ_G0033797.1 mouse_genomes_project 9 49611840 49681306 + MGP_CASTEiJ_P0092484 Alg9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092485.1 MGP_CASTEiJ_G0033797.1 mouse_genomes_project 9 49611902 49626097 + MGP_CASTEiJ_P0092485 Alg9 protein_coding protein_coding MGP_CASTEiJ_T0092486.1 MGP_CASTEiJ_G0033797.1 mouse_genomes_project 9 49612081 49619880 + Alg9 protein_coding processed_transcript MGP_CASTEiJ_T0092487.1 MGP_CASTEiJ_G0033797.1 mouse_genomes_project 9 49612644 49615614 + Alg9 protein_coding processed_transcript MGP_CASTEiJ_T0092488.1 MGP_CASTEiJ_G0033797.1 mouse_genomes_project 9 49638435 49680527 + MGP_CASTEiJ_P0092488 Alg9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092489.1 MGP_CASTEiJ_G0033797.1 mouse_genomes_project 9 49644938 49681126 + MGP_CASTEiJ_P0092489 Alg9 protein_coding protein_coding MGP_CASTEiJ_T0092490.1 MGP_CASTEiJ_G0033797.1 mouse_genomes_project 9 49660172 49680735 + Alg9 protein_coding processed_transcript MGP_CASTEiJ_T0092491.1 MGP_CASTEiJ_G0033797.1 mouse_genomes_project 9 49673322 49680855 + Alg9 protein_coding processed_transcript MGP_CASTEiJ_T0091214.1 MGP_CASTEiJ_G0033318.1 mouse_genomes_project 9 1255610 1269794 - MGP_CASTEiJ_P0091214 Aasdhppt protein_coding protein_coding MGP_CASTEiJ_T0010771.1 MGP_CASTEiJ_G0008959.1 mouse_genomes_project 9 77940834 77940922 + Gm25250 miRNA miRNA MGP_CASTEiJ_T0101410.1 MGP_CASTEiJ_G0038323.1 mouse_genomes_project 9 105147668 105147810 - Gm25904 snoRNA snoRNA MGP_CASTEiJ_T0091664.1 MGP_CASTEiJ_G0033491.1 mouse_genomes_project 9 19916665 19936667 - MGP_CASTEiJ_P0091664 Rp9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091665.1 MGP_CASTEiJ_G0033491.1 mouse_genomes_project 9 19916665 19936766 - MGP_CASTEiJ_P0091665 Rp9 protein_coding protein_coding MGP_CASTEiJ_T0010765.1 MGP_CASTEiJ_G0008953.1 mouse_genomes_project 9 67631848 67631927 - Mir7242 miRNA miRNA MGP_CASTEiJ_T0015417.1 MGP_CASTEiJ_G0013580.1 mouse_genomes_project 9 18764388 18765942 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017820.1 MGP_CASTEiJ_G0015070.1 mouse_genomes_project 9 99313082 99319496 - Foxl2os processed_transcript lincRNA MGP_CASTEiJ_T0017821.1 MGP_CASTEiJ_G0015070.1 mouse_genomes_project 9 99317990 99318482 - Foxl2os processed_transcript retained_intron MGP_CASTEiJ_T0017822.1 MGP_CASTEiJ_G0015070.1 mouse_genomes_project 9 99318072 99318995 - Foxl2os processed_transcript retained_intron MGP_CASTEiJ_T0091952.1 MGP_CASTEiJ_G0033573.1 mouse_genomes_project 9 35539120 35549561 - MGP_CASTEiJ_P0091952 Spa17 protein_coding protein_coding MGP_CASTEiJ_T0002306.1 MGP_CASTEiJ_G0002224.1 mouse_genomes_project 9 72871887 72874487 + TEC TEC MGP_CASTEiJ_T0009002.1 MGP_CASTEiJ_G0007251.1 mouse_genomes_project 9 42938401 42940159 + C030014I23Rik lincRNA lincRNA MGP_CASTEiJ_T0009003.1 MGP_CASTEiJ_G0007251.1 mouse_genomes_project 9 42939254 42942607 + C030014I23Rik lincRNA lincRNA MGP_CASTEiJ_T0092307.1 MGP_CASTEiJ_G0033744.1 mouse_genomes_project 9 43957677 44295708 + MGP_CASTEiJ_P0092307 Dscaml1 protein_coding protein_coding MGP_CASTEiJ_T0091545.1 MGP_CASTEiJ_G0033442.1 mouse_genomes_project 9 18400615 18406537 - MGP_CASTEiJ_P0091545 Zglp1 protein_coding protein_coding MGP_CASTEiJ_T0094070.1 MGP_CASTEiJ_G0034182.1 mouse_genomes_project 9 103106743 103155623 - MGP_CASTEiJ_P0094070 Cep63 protein_coding protein_coding MGP_CASTEiJ_T0094071.1 MGP_CASTEiJ_G0034182.1 mouse_genomes_project 9 103106755 103108764 - Cep63 protein_coding TEC MGP_CASTEiJ_T0094072.1 MGP_CASTEiJ_G0034182.1 mouse_genomes_project 9 103108735 103155610 - MGP_CASTEiJ_P0094072 Cep63 protein_coding protein_coding MGP_CASTEiJ_T0094073.1 MGP_CASTEiJ_G0034182.1 mouse_genomes_project 9 103108844 103109328 - Cep63 protein_coding retained_intron MGP_CASTEiJ_T0094074.1 MGP_CASTEiJ_G0034182.1 mouse_genomes_project 9 103113725 103151446 - Cep63 protein_coding retained_intron MGP_CASTEiJ_T0094075.1 MGP_CASTEiJ_G0034182.1 mouse_genomes_project 9 103121543 103126077 - Cep63 protein_coding retained_intron MGP_CASTEiJ_T0094076.1 MGP_CASTEiJ_G0034182.1 mouse_genomes_project 9 103144795 103155509 - MGP_CASTEiJ_P0094076 Cep63 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094077.1 MGP_CASTEiJ_G0034182.1 mouse_genomes_project 9 103148298 103155995 - MGP_CASTEiJ_P0094077 Cep63 protein_coding protein_coding MGP_CASTEiJ_T0094078.1 MGP_CASTEiJ_G0034182.1 mouse_genomes_project 9 103148348 103155995 - MGP_CASTEiJ_P0094078 Cep63 protein_coding protein_coding MGP_CASTEiJ_T0094944.1 MGP_CASTEiJ_G0034319.1 mouse_genomes_project 9 110004431 110012376 - MGP_CASTEiJ_P0094944 Tma7 protein_coding protein_coding MGP_CASTEiJ_T0094945.1 MGP_CASTEiJ_G0034319.1 mouse_genomes_project 9 110007759 110012585 - MGP_CASTEiJ_P0094945 Tma7 protein_coding protein_coding MGP_CASTEiJ_T0094946.1 MGP_CASTEiJ_G0034319.1 mouse_genomes_project 9 110008059 110012376 - Tma7 protein_coding processed_transcript MGP_CASTEiJ_T0094947.1 MGP_CASTEiJ_G0034319.1 mouse_genomes_project 9 110012060 110012363 - Tma7 protein_coding retained_intron MGP_CASTEiJ_T0091259.1 MGP_CASTEiJ_G0033336.1 mouse_genomes_project 9 4621658 4635723 + MGP_CASTEiJ_P0091259 Mmp27 protein_coding protein_coding MGP_CASTEiJ_T0091260.1 MGP_CASTEiJ_G0033336.1 mouse_genomes_project 9 4621720 4635718 + MGP_CASTEiJ_P0091260 Mmp27 protein_coding protein_coding MGP_CASTEiJ_T0091261.1 MGP_CASTEiJ_G0033336.1 mouse_genomes_project 9 4621725 4636193 + MGP_CASTEiJ_P0091261 Mmp27 protein_coding protein_coding MGP_CASTEiJ_T0091262.1 MGP_CASTEiJ_G0033336.1 mouse_genomes_project 9 4621762 4629629 + MGP_CASTEiJ_P0091262 Mmp27 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092716.1 MGP_CASTEiJ_G0033873.1 mouse_genomes_project 9 56763877 56772352 - MGP_CASTEiJ_P0092716 Mpi protein_coding protein_coding MGP_CASTEiJ_T0092717.1 MGP_CASTEiJ_G0033873.1 mouse_genomes_project 9 56767878 56771868 - Mpi protein_coding retained_intron MGP_CASTEiJ_T0092718.1 MGP_CASTEiJ_G0033873.1 mouse_genomes_project 9 56768207 56769290 - Mpi protein_coding retained_intron MGP_CASTEiJ_T0092719.1 MGP_CASTEiJ_G0033873.1 mouse_genomes_project 9 56768747 56772298 - MGP_CASTEiJ_P0092719 Mpi protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092720.1 MGP_CASTEiJ_G0033873.1 mouse_genomes_project 9 56769587 56772305 - Mpi protein_coding retained_intron MGP_CASTEiJ_T0092006.1 MGP_CASTEiJ_G0033615.1 mouse_genomes_project 9 36742166 36746217 + MGP_CASTEiJ_P0092006 Olfr920 protein_coding protein_coding MGP_CASTEiJ_T0010767.1 MGP_CASTEiJ_G0008955.1 mouse_genomes_project 9 70431214 70431274 - Mir5626 miRNA miRNA MGP_CASTEiJ_T0005386.1 MGP_CASTEiJ_G0004554.1 mouse_genomes_project 9 108146979 108148438 - Gm17041 antisense antisense MGP_CASTEiJ_T0091430.1 MGP_CASTEiJ_G0033384.1 mouse_genomes_project 9 15592813 15594346 + MGP_CASTEiJ_P0091430 Gm5612 protein_coding protein_coding MGP_CASTEiJ_T0101364.1 MGP_CASTEiJ_G0038277.1 mouse_genomes_project 9 23130749 23130858 - Gm25861 snoRNA snoRNA MGP_CASTEiJ_T0015546.1 MGP_CASTEiJ_G0013709.1 mouse_genomes_project 9 118630800 118631162 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095490.1 MGP_CASTEiJ_G0034447.1 mouse_genomes_project 9 124040379 124061355 + MGP_CASTEiJ_P0095490 protein_coding protein_coding MGP_CASTEiJ_T0095491.1 MGP_CASTEiJ_G0034447.1 mouse_genomes_project 9 124040406 124061463 + MGP_CASTEiJ_P0095491 protein_coding protein_coding MGP_CASTEiJ_T0095492.1 MGP_CASTEiJ_G0034447.1 mouse_genomes_project 9 124040443 124088536 + MGP_CASTEiJ_P0095492 protein_coding protein_coding MGP_CASTEiJ_T0095493.1 MGP_CASTEiJ_G0034447.1 mouse_genomes_project 9 124040455 124061310 + MGP_CASTEiJ_P0095493 protein_coding protein_coding MGP_CASTEiJ_T0095494.1 MGP_CASTEiJ_G0034447.1 mouse_genomes_project 9 124040471 124093090 + MGP_CASTEiJ_P0095494 protein_coding protein_coding MGP_CASTEiJ_T0095495.1 MGP_CASTEiJ_G0034447.1 mouse_genomes_project 9 124040848 124061155 + protein_coding processed_transcript MGP_CASTEiJ_T0095496.1 MGP_CASTEiJ_G0034447.1 mouse_genomes_project 9 124083841 124088538 + protein_coding retained_intron MGP_CASTEiJ_T0095497.1 MGP_CASTEiJ_G0034447.1 mouse_genomes_project 9 124086032 124088637 + protein_coding retained_intron MGP_CASTEiJ_T0095498.1 MGP_CASTEiJ_G0034447.1 mouse_genomes_project 9 124088890 124092522 + protein_coding processed_transcript MGP_CASTEiJ_T0091937.1 MGP_CASTEiJ_G0033568.1 mouse_genomes_project 9 35341851 35345056 - Robo3 protein_coding retained_intron MGP_CASTEiJ_T0091938.1 MGP_CASTEiJ_G0033568.1 mouse_genomes_project 9 35342228 35348799 - Robo3 protein_coding retained_intron MGP_CASTEiJ_T0091939.1 MGP_CASTEiJ_G0033568.1 mouse_genomes_project 9 35342228 35359146 - MGP_CASTEiJ_P0091939 Robo3 protein_coding protein_coding MGP_CASTEiJ_T0091940.1 MGP_CASTEiJ_G0033568.1 mouse_genomes_project 9 35342228 35356340 - MGP_CASTEiJ_P0091940 Robo3 protein_coding protein_coding MGP_CASTEiJ_T0091941.1 MGP_CASTEiJ_G0033568.1 mouse_genomes_project 9 35342345 35356340 - Robo3 protein_coding retained_intron MGP_CASTEiJ_T0091942.1 MGP_CASTEiJ_G0033568.1 mouse_genomes_project 9 35343585 35344983 - Robo3 protein_coding retained_intron MGP_CASTEiJ_T0092670.1 MGP_CASTEiJ_G0033859.1 mouse_genomes_project 9 56085326 56087167 + MGP_CASTEiJ_P0092670 Imp3 protein_coding protein_coding MGP_CASTEiJ_T0011402.1 MGP_CASTEiJ_G0009590.1 mouse_genomes_project 9 18131008 18131329 + Gm26274 misc_RNA misc_RNA MGP_CASTEiJ_T0094585.1 MGP_CASTEiJ_G0034266.1 mouse_genomes_project 9 108804929 108818442 + MGP_CASTEiJ_P0094585 Mst1r protein_coding protein_coding MGP_CASTEiJ_T0094586.1 MGP_CASTEiJ_G0034266.1 mouse_genomes_project 9 108804963 108818440 + MGP_CASTEiJ_P0094586 Mst1r protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094587.1 MGP_CASTEiJ_G0034266.1 mouse_genomes_project 9 108813065 108813791 + Mst1r protein_coding retained_intron MGP_CASTEiJ_T0094588.1 MGP_CASTEiJ_G0034266.1 mouse_genomes_project 9 108814283 108814964 + Mst1r protein_coding retained_intron MGP_CASTEiJ_T0102611.1 MGP_CASTEiJ_G0039335.1 mouse_genomes_project 9 126180701 126182911 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0094164.1 MGP_CASTEiJ_G0034201.1 mouse_genomes_project 9 104723676 104743506 - Ackr4 protein_coding processed_transcript MGP_CASTEiJ_T0094167.1 MGP_CASTEiJ_G0034201.1 mouse_genomes_project 9 104739099 104771601 - MGP_CASTEiJ_P0094167 Ackr4 protein_coding protein_coding MGP_CASTEiJ_T0094168.1 MGP_CASTEiJ_G0034201.1 mouse_genomes_project 9 104739230 104743965 - MGP_CASTEiJ_P0094168 Ackr4 protein_coding protein_coding MGP_CASTEiJ_T0092200.1 MGP_CASTEiJ_G0033709.1 mouse_genomes_project 9 42804656 42819489 - MGP_CASTEiJ_P0092200 Vps11 protein_coding protein_coding MGP_CASTEiJ_T0002338.1 MGP_CASTEiJ_G0002255.1 mouse_genomes_project 9 91453591 91454331 - TEC TEC MGP_CASTEiJ_T0091467.1 MGP_CASTEiJ_G0033416.1 mouse_genomes_project 9 17344034 17345030 - MGP_CASTEiJ_P0091467 Olfr867 protein_coding protein_coding MGP_CASTEiJ_T0011421.1 MGP_CASTEiJ_G0009609.1 mouse_genomes_project 9 123119636 123119882 + Gm22987 misc_RNA misc_RNA MGP_CASTEiJ_T0091519.1 MGP_CASTEiJ_G0033428.1 mouse_genomes_project 9 17956096 17970609 + MGP_CASTEiJ_P0091519 Pin1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091520.1 MGP_CASTEiJ_G0033428.1 mouse_genomes_project 9 17956169 17973799 + MGP_CASTEiJ_P0091520 Pin1 protein_coding protein_coding MGP_CASTEiJ_T0092044.1 MGP_CASTEiJ_G0033647.1 mouse_genomes_project 9 37896376 37897315 + MGP_CASTEiJ_P0092044 Olfr965 protein_coding protein_coding MGP_CASTEiJ_T0095574.1 MGP_CASTEiJ_G0034477.1 mouse_genomes_project 9 125954715 125968589 + MGP_CASTEiJ_P0095574 Ccr3 protein_coding protein_coding MGP_CASTEiJ_T0008972.1 MGP_CASTEiJ_G0007223.1 mouse_genomes_project 9 10212277 10212680 - Gm29176 lincRNA lincRNA MGP_CASTEiJ_T0002335.1 MGP_CASTEiJ_G0002252.1 mouse_genomes_project 9 91368553 91371042 - TEC TEC MGP_CASTEiJ_T0010724.1 MGP_CASTEiJ_G0008912.1 mouse_genomes_project 9 4842095 4842146 + Mir5618 miRNA miRNA MGP_CASTEiJ_T0101413.1 MGP_CASTEiJ_G0038326.1 mouse_genomes_project 9 109761919 109762066 - Gm23034 snoRNA snoRNA MGP_CASTEiJ_T0015475.1 MGP_CASTEiJ_G0013638.1 mouse_genomes_project 9 78763029 78763605 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011408.1 MGP_CASTEiJ_G0009596.1 mouse_genomes_project 9 77089649 77089942 - Gm23791 misc_RNA misc_RNA MGP_CASTEiJ_T0094884.1 MGP_CASTEiJ_G0034310.1 mouse_genomes_project 9 109837518 109838463 + MGP_CASTEiJ_P0094884 Tmem89 protein_coding protein_coding MGP_CASTEiJ_T0094885.1 MGP_CASTEiJ_G0034310.1 mouse_genomes_project 9 109837518 109838463 + MGP_CASTEiJ_P0094885 Tmem89 protein_coding protein_coding MGP_CASTEiJ_T0091444.1 MGP_CASTEiJ_G0033393.1 mouse_genomes_project 9 16136044 16182727 - MGP_CASTEiJ_P0091444 protein_coding protein_coding MGP_CASTEiJ_T0094374.1 MGP_CASTEiJ_G0034237.1 mouse_genomes_project 9 107517888 107624544 - MGP_CASTEiJ_P0094374 Rad54l2 protein_coding protein_coding MGP_CASTEiJ_T0094375.1 MGP_CASTEiJ_G0034237.1 mouse_genomes_project 9 107518596 107523096 - MGP_CASTEiJ_P0094375 Rad54l2 protein_coding protein_coding MGP_CASTEiJ_T0094376.1 MGP_CASTEiJ_G0034237.1 mouse_genomes_project 9 107552736 107553687 - MGP_CASTEiJ_P0094376 Rad54l2 protein_coding protein_coding MGP_CASTEiJ_T0094377.1 MGP_CASTEiJ_G0034237.1 mouse_genomes_project 9 107622117 107624526 - Rad54l2 protein_coding retained_intron MGP_CASTEiJ_T0009029.1 MGP_CASTEiJ_G0007271.1 mouse_genomes_project 9 69736010 69815956 + B230323A14Rik lincRNA lincRNA MGP_CASTEiJ_T0009030.1 MGP_CASTEiJ_G0007271.1 mouse_genomes_project 9 69738391 69815314 + B230323A14Rik lincRNA lincRNA MGP_CASTEiJ_T0101399.1 MGP_CASTEiJ_G0038312.1 mouse_genomes_project 9 87426145 87426273 + Gm22138 snoRNA snoRNA MGP_CASTEiJ_T0091853.1 MGP_CASTEiJ_G0033540.1 mouse_genomes_project 9 33456595 33478348 - MGP_CASTEiJ_P0091853 Ddx25 protein_coding protein_coding MGP_CASTEiJ_T0101671.1 MGP_CASTEiJ_G0038504.1 mouse_genomes_project 9 57471925 57477837 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101672.1 MGP_CASTEiJ_G0038504.1 mouse_genomes_project 9 57477081 57477597 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0015522.1 MGP_CASTEiJ_G0013685.1 mouse_genomes_project 9 99607070 99607590 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098773.1 MGP_CASTEiJ_G0035704.1 mouse_genomes_project 9 63943588 63943723 + Gm24289 scaRNA scaRNA MGP_CASTEiJ_T0015499.1 MGP_CASTEiJ_G0013662.1 mouse_genomes_project 9 90865123 90865286 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091547.1 MGP_CASTEiJ_G0033444.1 mouse_genomes_project 9 18414298 18432013 - MGP_CASTEiJ_P0091547 Raver1 protein_coding protein_coding MGP_CASTEiJ_T0093338.1 MGP_CASTEiJ_G0034020.1 mouse_genomes_project 9 72657541 72749949 + MGP_CASTEiJ_P0093338 Rfx7 protein_coding protein_coding MGP_CASTEiJ_T0093339.1 MGP_CASTEiJ_G0034020.1 mouse_genomes_project 9 72657541 72750057 + MGP_CASTEiJ_P0093339 Rfx7 protein_coding protein_coding MGP_CASTEiJ_T0093340.1 MGP_CASTEiJ_G0034020.1 mouse_genomes_project 9 72657544 72734664 + Rfx7 protein_coding processed_transcript MGP_CASTEiJ_T0093341.1 MGP_CASTEiJ_G0034020.1 mouse_genomes_project 9 72657919 72739365 + MGP_CASTEiJ_P0093341 Rfx7 protein_coding protein_coding MGP_CASTEiJ_T0093342.1 MGP_CASTEiJ_G0034020.1 mouse_genomes_project 9 72658051 72740458 + MGP_CASTEiJ_P0093342 Rfx7 protein_coding protein_coding MGP_CASTEiJ_T0093343.1 MGP_CASTEiJ_G0034020.1 mouse_genomes_project 9 72729162 72731939 + Rfx7 protein_coding retained_intron MGP_CASTEiJ_T0091469.1 MGP_CASTEiJ_G0033418.1 mouse_genomes_project 9 17586164 17596955 + MGP_CASTEiJ_P0091469 Olfr39 protein_coding protein_coding MGP_CASTEiJ_T0092060.1 MGP_CASTEiJ_G0033663.1 mouse_genomes_project 9 38245775 38246742 + MGP_CASTEiJ_P0092060 Olfr982 protein_coding protein_coding MGP_CASTEiJ_T0094337.1 MGP_CASTEiJ_G0034228.1 mouse_genomes_project 9 107287502 107294182 - MGP_CASTEiJ_P0094337 Parp3 protein_coding protein_coding MGP_CASTEiJ_T0094338.1 MGP_CASTEiJ_G0034228.1 mouse_genomes_project 9 107287809 107293609 - MGP_CASTEiJ_P0094338 Parp3 protein_coding protein_coding MGP_CASTEiJ_T0094339.1 MGP_CASTEiJ_G0034228.1 mouse_genomes_project 9 107288171 107293402 - Parp3 protein_coding retained_intron MGP_CASTEiJ_T0094340.1 MGP_CASTEiJ_G0034228.1 mouse_genomes_project 9 107288171 107293902 - MGP_CASTEiJ_P0094340 Parp3 protein_coding protein_coding MGP_CASTEiJ_T0094341.1 MGP_CASTEiJ_G0034228.1 mouse_genomes_project 9 107288177 107289202 - Parp3 protein_coding retained_intron MGP_CASTEiJ_T0094342.1 MGP_CASTEiJ_G0034228.1 mouse_genomes_project 9 107291599 107293337 - MGP_CASTEiJ_P0094342 Parp3 protein_coding protein_coding MGP_CASTEiJ_T0094343.1 MGP_CASTEiJ_G0034228.1 mouse_genomes_project 9 107291806 107293829 - Parp3 protein_coding retained_intron MGP_CASTEiJ_T0094344.1 MGP_CASTEiJ_G0034228.1 mouse_genomes_project 9 107291836 107293628 - MGP_CASTEiJ_P0094344 Parp3 protein_coding protein_coding MGP_CASTEiJ_T0094361.1 MGP_CASTEiJ_G0034235.1 mouse_genomes_project 9 107468870 107473885 - MGP_CASTEiJ_P0094361 Grm2 protein_coding protein_coding MGP_CASTEiJ_T0094362.1 MGP_CASTEiJ_G0034235.1 mouse_genomes_project 9 107468892 107481939 - MGP_CASTEiJ_P0094362 Grm2 protein_coding protein_coding MGP_CASTEiJ_T0094363.1 MGP_CASTEiJ_G0034235.1 mouse_genomes_project 9 107470666 107481941 - MGP_CASTEiJ_P0094363 Grm2 protein_coding protein_coding MGP_CASTEiJ_T0094364.1 MGP_CASTEiJ_G0034235.1 mouse_genomes_project 9 107470765 107472398 - Grm2 protein_coding processed_transcript MGP_CASTEiJ_T0094290.1 MGP_CASTEiJ_G0034221.1 mouse_genomes_project 9 107077481 107149994 + MGP_CASTEiJ_P0094290 Poc1a protein_coding protein_coding MGP_CASTEiJ_T0094291.1 MGP_CASTEiJ_G0034221.1 mouse_genomes_project 9 107077800 107150007 + MGP_CASTEiJ_P0094291 Poc1a protein_coding protein_coding MGP_CASTEiJ_T0094292.1 MGP_CASTEiJ_G0034221.1 mouse_genomes_project 9 107087250 107150650 + Poc1a protein_coding processed_transcript MGP_CASTEiJ_T0094293.1 MGP_CASTEiJ_G0034221.1 mouse_genomes_project 9 107097149 107149992 + Poc1a protein_coding processed_transcript MGP_CASTEiJ_T0094294.1 MGP_CASTEiJ_G0034221.1 mouse_genomes_project 9 107127988 107149993 + Poc1a protein_coding processed_transcript MGP_CASTEiJ_T0093995.1 MGP_CASTEiJ_G0034165.1 mouse_genomes_project 9 99878866 99973790 - MGP_CASTEiJ_P0093995 Armc8 protein_coding protein_coding MGP_CASTEiJ_T0093996.1 MGP_CASTEiJ_G0034165.1 mouse_genomes_project 9 99919545 99973540 - MGP_CASTEiJ_P0093996 Armc8 protein_coding protein_coding MGP_CASTEiJ_T0093997.1 MGP_CASTEiJ_G0034165.1 mouse_genomes_project 9 99921161 99973537 - MGP_CASTEiJ_P0093997 Armc8 protein_coding protein_coding MGP_CASTEiJ_T0093998.1 MGP_CASTEiJ_G0034165.1 mouse_genomes_project 9 99952898 99973554 - Armc8 protein_coding retained_intron MGP_CASTEiJ_T0093247.1 MGP_CASTEiJ_G0034009.1 mouse_genomes_project 9 70850707 70993394 - MGP_CASTEiJ_P0093247 Lipc protein_coding protein_coding MGP_CASTEiJ_T0093248.1 MGP_CASTEiJ_G0034009.1 mouse_genomes_project 9 70850845 70879912 - MGP_CASTEiJ_P0093248 Lipc protein_coding unknown_likely_coding MGP_CASTEiJ_T0093249.1 MGP_CASTEiJ_G0034009.1 mouse_genomes_project 9 70850845 70887850 - MGP_CASTEiJ_P0093249 Lipc protein_coding unknown_likely_coding MGP_CASTEiJ_T0093250.1 MGP_CASTEiJ_G0034009.1 mouse_genomes_project 9 70850845 70880127 - MGP_CASTEiJ_P0093250 Lipc protein_coding unknown_likely_coding MGP_CASTEiJ_T0094848.1 MGP_CASTEiJ_G0034306.1 mouse_genomes_project 9 109750481 109772910 + MGP_CASTEiJ_P0094848 Ip6k2 protein_coding protein_coding MGP_CASTEiJ_T0094849.1 MGP_CASTEiJ_G0034306.1 mouse_genomes_project 9 109750481 109764670 + MGP_CASTEiJ_P0094849 Ip6k2 protein_coding protein_coding MGP_CASTEiJ_T0094850.1 MGP_CASTEiJ_G0034306.1 mouse_genomes_project 9 109750507 109765515 + Ip6k2 protein_coding retained_intron MGP_CASTEiJ_T0094851.1 MGP_CASTEiJ_G0034306.1 mouse_genomes_project 9 109750550 109763658 + Ip6k2 protein_coding retained_intron MGP_CASTEiJ_T0094852.1 MGP_CASTEiJ_G0034306.1 mouse_genomes_project 9 109750550 109764372 + MGP_CASTEiJ_P0094852 Ip6k2 protein_coding protein_coding MGP_CASTEiJ_T0094853.1 MGP_CASTEiJ_G0034306.1 mouse_genomes_project 9 109750550 109764025 + MGP_CASTEiJ_P0094853 Ip6k2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094854.1 MGP_CASTEiJ_G0034306.1 mouse_genomes_project 9 109762671 109772915 + MGP_CASTEiJ_P0094854 Ip6k2 protein_coding protein_coding MGP_CASTEiJ_T0094855.1 MGP_CASTEiJ_G0034306.1 mouse_genomes_project 9 109762671 109765950 + MGP_CASTEiJ_P0094855 Ip6k2 protein_coding protein_coding MGP_CASTEiJ_T0094856.1 MGP_CASTEiJ_G0034306.1 mouse_genomes_project 9 109762741 109764122 + MGP_CASTEiJ_P0094856 Ip6k2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094857.1 MGP_CASTEiJ_G0034306.1 mouse_genomes_project 9 109762808 109764675 + MGP_CASTEiJ_P0094857 Ip6k2 protein_coding protein_coding MGP_CASTEiJ_T0094858.1 MGP_CASTEiJ_G0034306.1 mouse_genomes_project 9 109763029 109764373 + MGP_CASTEiJ_P0094858 Ip6k2 protein_coding protein_coding MGP_CASTEiJ_T0094859.1 MGP_CASTEiJ_G0034306.1 mouse_genomes_project 9 109764867 109766053 + Ip6k2 protein_coding retained_intron MGP_CASTEiJ_T0095144.1 MGP_CASTEiJ_G0034354.1 mouse_genomes_project 9 111996869 111999659 - MGP_CASTEiJ_P0095144 Gm590 protein_coding protein_coding MGP_CASTEiJ_T0101397.1 MGP_CASTEiJ_G0038310.1 mouse_genomes_project 9 86165500 86165636 + Gm25125 snoRNA snoRNA MGP_CASTEiJ_T0093810.1 MGP_CASTEiJ_G0034124.1 mouse_genomes_project 9 92438180 92457982 + 1700057G04Rik protein_coding processed_transcript MGP_CASTEiJ_T0093811.1 MGP_CASTEiJ_G0034124.1 mouse_genomes_project 9 92438180 92475391 + MGP_CASTEiJ_P0093811 1700057G04Rik protein_coding protein_coding MGP_CASTEiJ_T0093812.1 MGP_CASTEiJ_G0034124.1 mouse_genomes_project 9 92438180 92492222 + MGP_CASTEiJ_P0093812 1700057G04Rik protein_coding protein_coding MGP_CASTEiJ_T0093813.1 MGP_CASTEiJ_G0034124.1 mouse_genomes_project 9 92438211 92482756 + 1700057G04Rik protein_coding processed_transcript MGP_CASTEiJ_T0093814.1 MGP_CASTEiJ_G0034124.1 mouse_genomes_project 9 92475212 92492165 + MGP_CASTEiJ_P0093814 1700057G04Rik protein_coding protein_coding MGP_CASTEiJ_T0093815.1 MGP_CASTEiJ_G0034124.1 mouse_genomes_project 9 92482769 92492222 + MGP_CASTEiJ_P0093815 1700057G04Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093176.1 MGP_CASTEiJ_G0033991.1 mouse_genomes_project 9 67664825 67666319 + MGP_CASTEiJ_P0093176 C2cd4b protein_coding protein_coding MGP_CASTEiJ_T0092794.1 MGP_CASTEiJ_G0033893.1 mouse_genomes_project 9 57569175 57594701 - MGP_CASTEiJ_P0092794 Loxl1 protein_coding protein_coding MGP_CASTEiJ_T0093447.1 MGP_CASTEiJ_G0034047.1 mouse_genomes_project 9 75864528 75877572 + MGP_CASTEiJ_P0093447 Lysmd2 protein_coding protein_coding MGP_CASTEiJ_T0009091.1 MGP_CASTEiJ_G0007321.1 mouse_genomes_project 9 105012806 105036805 + Gm28548 lincRNA lincRNA MGP_CASTEiJ_T0094820.1 MGP_CASTEiJ_G0034302.1 mouse_genomes_project 9 109523528 109546888 - MGP_CASTEiJ_P0094820 P4htm protein_coding protein_coding MGP_CASTEiJ_T0094821.1 MGP_CASTEiJ_G0034302.1 mouse_genomes_project 9 109523845 109524224 - P4htm protein_coding processed_transcript MGP_CASTEiJ_T0094822.1 MGP_CASTEiJ_G0034302.1 mouse_genomes_project 9 109525255 109527601 - P4htm protein_coding retained_intron MGP_CASTEiJ_T0094823.1 MGP_CASTEiJ_G0034302.1 mouse_genomes_project 9 109526217 109546797 - P4htm protein_coding retained_intron MGP_CASTEiJ_T0094824.1 MGP_CASTEiJ_G0034302.1 mouse_genomes_project 9 109527655 109546801 - MGP_CASTEiJ_P0094824 P4htm protein_coding protein_coding MGP_CASTEiJ_T0094825.1 MGP_CASTEiJ_G0034302.1 mouse_genomes_project 9 109527655 109546567 - MGP_CASTEiJ_P0094825 P4htm protein_coding protein_coding MGP_CASTEiJ_T0091268.1 MGP_CASTEiJ_G0033340.1 mouse_genomes_project 9 4866465 4884466 - MGP_CASTEiJ_P0091268 Birc2 protein_coding protein_coding MGP_CASTEiJ_T0091269.1 MGP_CASTEiJ_G0033340.1 mouse_genomes_project 9 4866476 4882695 - MGP_CASTEiJ_P0091269 Birc2 protein_coding protein_coding MGP_CASTEiJ_T0091270.1 MGP_CASTEiJ_G0033340.1 mouse_genomes_project 9 4882223 4884214 - Birc2 protein_coding processed_transcript MGP_CASTEiJ_T0091271.1 MGP_CASTEiJ_G0033340.1 mouse_genomes_project 9 4884095 4884473 - MGP_CASTEiJ_P0091271 Birc2 protein_coding protein_coding MGP_CASTEiJ_T0002295.1 MGP_CASTEiJ_G0002213.1 mouse_genomes_project 9 72085896 72088322 - TEC TEC MGP_CASTEiJ_T0005317.1 MGP_CASTEiJ_G0004507.1 mouse_genomes_project 9 57383437 57384612 + Gm16131 antisense antisense MGP_CASTEiJ_T0093969.1 MGP_CASTEiJ_G0034159.1 mouse_genomes_project 9 99377048 99409968 - MGP_CASTEiJ_P0093969 Gm1123 protein_coding protein_coding MGP_CASTEiJ_T0010787.1 MGP_CASTEiJ_G0008975.1 mouse_genomes_project 9 109897851 109897933 + Mir711 miRNA miRNA MGP_CASTEiJ_T0093951.1 MGP_CASTEiJ_G0034151.1 mouse_genomes_project 9 98913309 98916905 + Copb2 protein_coding retained_intron MGP_CASTEiJ_T0093952.1 MGP_CASTEiJ_G0034151.1 mouse_genomes_project 9 98913319 98938476 + MGP_CASTEiJ_P0093952 Copb2 protein_coding protein_coding MGP_CASTEiJ_T0093953.1 MGP_CASTEiJ_G0034151.1 mouse_genomes_project 9 98930061 98931329 + Copb2 protein_coding retained_intron MGP_CASTEiJ_T0093954.1 MGP_CASTEiJ_G0034151.1 mouse_genomes_project 9 98936938 98937923 + Copb2 protein_coding retained_intron MGP_CASTEiJ_T0093955.1 MGP_CASTEiJ_G0034151.1 mouse_genomes_project 9 98937439 98938125 + Copb2 protein_coding retained_intron MGP_CASTEiJ_T0093956.1 MGP_CASTEiJ_G0034151.1 mouse_genomes_project 9 98937640 98938355 + Copb2 protein_coding retained_intron MGP_CASTEiJ_T0010773.1 MGP_CASTEiJ_G0008961.1 mouse_genomes_project 9 92394753 92394847 - Mir6386 miRNA miRNA MGP_CASTEiJ_T0010776.1 MGP_CASTEiJ_G0008964.1 mouse_genomes_project 9 105088933 105089008 + Mir2136 miRNA miRNA MGP_CASTEiJ_T0093519.1 MGP_CASTEiJ_G0034069.1 mouse_genomes_project 9 78816750 78830631 - MGP_CASTEiJ_P0093519 Mb21d1 protein_coding protein_coding MGP_CASTEiJ_T0093520.1 MGP_CASTEiJ_G0034069.1 mouse_genomes_project 9 78817563 78830664 - MGP_CASTEiJ_P0093520 Mb21d1 protein_coding protein_coding MGP_CASTEiJ_T0093521.1 MGP_CASTEiJ_G0034069.1 mouse_genomes_project 9 78818019 78830312 - MGP_CASTEiJ_P0093521 Mb21d1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092478.1 MGP_CASTEiJ_G0033796.1 mouse_genomes_project 9 49604193 49608623 + Fdxacb1 protein_coding retained_intron MGP_CASTEiJ_T0092479.1 MGP_CASTEiJ_G0033796.1 mouse_genomes_project 9 49604206 49607545 + MGP_CASTEiJ_P0092479 Fdxacb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092480.1 MGP_CASTEiJ_G0033796.1 mouse_genomes_project 9 49604215 49609313 + MGP_CASTEiJ_P0092480 Fdxacb1 protein_coding protein_coding MGP_CASTEiJ_T0092482.1 MGP_CASTEiJ_G0033796.1 mouse_genomes_project 9 49606014 49607491 + MGP_CASTEiJ_P0092482 Fdxacb1 protein_coding protein_coding MGP_CASTEiJ_T0092528.1 MGP_CASTEiJ_G0033808.1 mouse_genomes_project 9 50831120 50851315 - MGP_CASTEiJ_P0092528 Fdx1 protein_coding protein_coding MGP_CASTEiJ_T0091987.1 MGP_CASTEiJ_G0033602.1 mouse_genomes_project 9 36379880 36380816 + MGP_CASTEiJ_P0091987 Olfr901 protein_coding protein_coding MGP_CASTEiJ_T0093975.1 MGP_CASTEiJ_G0034162.1 mouse_genomes_project 9 99633723 99655230 + MGP_CASTEiJ_P0093975 Cep70 protein_coding protein_coding MGP_CASTEiJ_T0093976.1 MGP_CASTEiJ_G0034162.1 mouse_genomes_project 9 99633798 99687503 + MGP_CASTEiJ_P0093976 Cep70 protein_coding protein_coding MGP_CASTEiJ_T0093977.1 MGP_CASTEiJ_G0034162.1 mouse_genomes_project 9 99633809 99645949 + Cep70 protein_coding retained_intron MGP_CASTEiJ_T0093978.1 MGP_CASTEiJ_G0034162.1 mouse_genomes_project 9 99633817 99656392 + MGP_CASTEiJ_P0093978 Cep70 protein_coding protein_coding MGP_CASTEiJ_T0093979.1 MGP_CASTEiJ_G0034162.1 mouse_genomes_project 9 99633819 99685099 + MGP_CASTEiJ_P0093979 Cep70 protein_coding protein_coding MGP_CASTEiJ_T0093980.1 MGP_CASTEiJ_G0034162.1 mouse_genomes_project 9 99633838 99654100 + MGP_CASTEiJ_P0093980 Cep70 protein_coding protein_coding MGP_CASTEiJ_T0093981.1 MGP_CASTEiJ_G0034162.1 mouse_genomes_project 9 99633882 99665354 + MGP_CASTEiJ_P0093981 Cep70 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093982.1 MGP_CASTEiJ_G0034162.1 mouse_genomes_project 9 99636641 99654535 + Cep70 protein_coding retained_intron MGP_CASTEiJ_T0093983.1 MGP_CASTEiJ_G0034162.1 mouse_genomes_project 9 99678588 99683465 + Cep70 protein_coding retained_intron MGP_CASTEiJ_T0002343.1 MGP_CASTEiJ_G0002260.1 mouse_genomes_project 9 96254479 96256663 + TEC TEC MGP_CASTEiJ_T0095239.1 MGP_CASTEiJ_G0034368.1 mouse_genomes_project 9 114907040 114966012 - MGP_CASTEiJ_P0095239 Pdcd6ip protein_coding protein_coding MGP_CASTEiJ_T0095240.1 MGP_CASTEiJ_G0034368.1 mouse_genomes_project 9 114909766 114965997 - MGP_CASTEiJ_P0095240 Pdcd6ip protein_coding protein_coding MGP_CASTEiJ_T0095241.1 MGP_CASTEiJ_G0034368.1 mouse_genomes_project 9 114910006 114965911 - MGP_CASTEiJ_P0095241 Pdcd6ip protein_coding unknown_likely_coding MGP_CASTEiJ_T0095242.1 MGP_CASTEiJ_G0034368.1 mouse_genomes_project 9 114911978 114913700 - Pdcd6ip protein_coding retained_intron MGP_CASTEiJ_T0095243.1 MGP_CASTEiJ_G0034368.1 mouse_genomes_project 9 114916054 114918837 - Pdcd6ip protein_coding retained_intron MGP_CASTEiJ_T0095244.1 MGP_CASTEiJ_G0034368.1 mouse_genomes_project 9 114930871 114941856 - Pdcd6ip protein_coding processed_transcript MGP_CASTEiJ_T0095245.1 MGP_CASTEiJ_G0034368.1 mouse_genomes_project 9 114943930 114953846 - Pdcd6ip protein_coding retained_intron MGP_CASTEiJ_T0100141.1 MGP_CASTEiJ_G0037054.1 mouse_genomes_project 9 72210026 72210125 - Gm25045 snRNA snRNA MGP_CASTEiJ_T0092218.1 MGP_CASTEiJ_G0033718.1 mouse_genomes_project 9 42975315 43023662 - MGP_CASTEiJ_P0092218 Cxcr5 protein_coding protein_coding MGP_CASTEiJ_T0092219.1 MGP_CASTEiJ_G0033718.1 mouse_genomes_project 9 42975315 42993122 - MGP_CASTEiJ_P0092219 Cxcr5 protein_coding protein_coding MGP_CASTEiJ_T0091316.1 MGP_CASTEiJ_G0033354.1 mouse_genomes_project 9 10745858 10799922 + MGP_CASTEiJ_P0091316 Mtmr2 protein_coding protein_coding MGP_CASTEiJ_T0091317.1 MGP_CASTEiJ_G0033354.1 mouse_genomes_project 9 10746629 10799922 + MGP_CASTEiJ_P0091317 Mtmr2 protein_coding protein_coding MGP_CASTEiJ_T0091318.1 MGP_CASTEiJ_G0033354.1 mouse_genomes_project 9 10746633 10776968 + Mtmr2 protein_coding processed_transcript MGP_CASTEiJ_T0091319.1 MGP_CASTEiJ_G0033354.1 mouse_genomes_project 9 10746645 10799922 + MGP_CASTEiJ_P0091319 Mtmr2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091320.1 MGP_CASTEiJ_G0033354.1 mouse_genomes_project 9 10746735 10802519 + MGP_CASTEiJ_P0091320 Mtmr2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091321.1 MGP_CASTEiJ_G0033354.1 mouse_genomes_project 9 10746767 10779484 + MGP_CASTEiJ_P0091321 Mtmr2 protein_coding protein_coding MGP_CASTEiJ_T0091322.1 MGP_CASTEiJ_G0033354.1 mouse_genomes_project 9 10746837 10779484 + MGP_CASTEiJ_P0091322 Mtmr2 protein_coding protein_coding MGP_CASTEiJ_T0091323.1 MGP_CASTEiJ_G0033354.1 mouse_genomes_project 9 10759322 10785117 + MGP_CASTEiJ_P0091323 Mtmr2 protein_coding protein_coding MGP_CASTEiJ_T0091324.1 MGP_CASTEiJ_G0033354.1 mouse_genomes_project 9 10760085 10779482 + Mtmr2 protein_coding processed_transcript MGP_CASTEiJ_T0091325.1 MGP_CASTEiJ_G0033354.1 mouse_genomes_project 9 10789072 10799921 + Mtmr2 protein_coding retained_intron MGP_CASTEiJ_T0095379.1 MGP_CASTEiJ_G0034409.1 mouse_genomes_project 9 121242832 121327145 - MGP_CASTEiJ_P0095379 Scn5a protein_coding protein_coding MGP_CASTEiJ_T0095380.1 MGP_CASTEiJ_G0034409.1 mouse_genomes_project 9 121242834 121343577 - MGP_CASTEiJ_P0095380 Scn5a protein_coding protein_coding MGP_CASTEiJ_T0095381.1 MGP_CASTEiJ_G0034409.1 mouse_genomes_project 9 121243748 121343577 - MGP_CASTEiJ_P0095381 Scn5a protein_coding protein_coding MGP_CASTEiJ_T0095383.1 MGP_CASTEiJ_G0034409.1 mouse_genomes_project 9 121327003 121327971 - MGP_CASTEiJ_P0095383 Scn5a protein_coding protein_coding MGP_CASTEiJ_T0100112.1 MGP_CASTEiJ_G0037025.1 mouse_genomes_project 9 20253875 20253960 - Gm27639 snRNA snRNA MGP_CASTEiJ_T0093783.1 MGP_CASTEiJ_G0034118.1 mouse_genomes_project 9 90294793 90365068 - MGP_CASTEiJ_P0093783 Tbc1d2b protein_coding protein_coding MGP_CASTEiJ_T0093784.1 MGP_CASTEiJ_G0034118.1 mouse_genomes_project 9 90297682 90365049 - MGP_CASTEiJ_P0093784 Tbc1d2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0093785.1 MGP_CASTEiJ_G0034118.1 mouse_genomes_project 9 90322052 90365103 - MGP_CASTEiJ_P0093785 Tbc1d2b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093786.1 MGP_CASTEiJ_G0034118.1 mouse_genomes_project 9 90332665 90365070 - MGP_CASTEiJ_P0093786 Tbc1d2b protein_coding protein_coding MGP_CASTEiJ_T0093787.1 MGP_CASTEiJ_G0034118.1 mouse_genomes_project 9 90335490 90350164 - Tbc1d2b protein_coding processed_transcript MGP_CASTEiJ_T0017817.1 MGP_CASTEiJ_G0015069.1 mouse_genomes_project 9 98911815 98913181 - 4930579K19Rik processed_transcript lincRNA MGP_CASTEiJ_T0017818.1 MGP_CASTEiJ_G0015069.1 mouse_genomes_project 9 98912046 98913200 - 4930579K19Rik processed_transcript TEC MGP_CASTEiJ_T0017819.1 MGP_CASTEiJ_G0015069.1 mouse_genomes_project 9 98912548 98913200 - 4930579K19Rik processed_transcript processed_transcript MGP_CASTEiJ_T0010750.1 MGP_CASTEiJ_G0008938.1 mouse_genomes_project 9 44493791 44493861 - Mir7087 miRNA miRNA MGP_CASTEiJ_T0094019.1 MGP_CASTEiJ_G0034171.1 mouse_genomes_project 9 100900722 100932281 - MGP_CASTEiJ_P0094019 Il20rb protein_coding protein_coding MGP_CASTEiJ_T0094020.1 MGP_CASTEiJ_G0034171.1 mouse_genomes_project 9 100900724 100909854 - Il20rb protein_coding retained_intron MGP_CASTEiJ_T0094021.1 MGP_CASTEiJ_G0034171.1 mouse_genomes_project 9 100900807 100904805 - Il20rb protein_coding processed_transcript MGP_CASTEiJ_T0094022.1 MGP_CASTEiJ_G0034171.1 mouse_genomes_project 9 100901533 100904777 - Il20rb protein_coding retained_intron MGP_CASTEiJ_T0094023.1 MGP_CASTEiJ_G0034171.1 mouse_genomes_project 9 100902079 100915614 - Il20rb protein_coding processed_transcript MGP_CASTEiJ_T0094024.1 MGP_CASTEiJ_G0034171.1 mouse_genomes_project 9 100908686 100931878 - Il20rb protein_coding retained_intron MGP_CASTEiJ_T0101363.1 MGP_CASTEiJ_G0038276.1 mouse_genomes_project 9 22508441 22508575 + Gm23893 snoRNA snoRNA MGP_CASTEiJ_T0092732.1 MGP_CASTEiJ_G0033882.1 mouse_genomes_project 9 56991181 57006824 - MGP_CASTEiJ_P0092732 Clk3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092733.1 MGP_CASTEiJ_G0033882.1 mouse_genomes_project 9 56991185 57007516 - MGP_CASTEiJ_P0092733 Clk3 protein_coding protein_coding MGP_CASTEiJ_T0015549.1 MGP_CASTEiJ_G0013712.1 mouse_genomes_project 9 122219558 122219985 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017748.1 MGP_CASTEiJ_G0015045.1 mouse_genomes_project 9 12428955 12433713 + Gm16568 processed_transcript processed_transcript MGP_CASTEiJ_T0015537.1 MGP_CASTEiJ_G0013700.1 mouse_genomes_project 9 106891575 106892241 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0094440.1 MGP_CASTEiJ_G0034249.1 mouse_genomes_project 9 108403150 108406636 + MGP_CASTEiJ_P0094440 Nprl2 protein_coding protein_coding MGP_CASTEiJ_T0094441.1 MGP_CASTEiJ_G0034249.1 mouse_genomes_project 9 108403165 108405564 + MGP_CASTEiJ_P0094441 Nprl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094442.1 MGP_CASTEiJ_G0034249.1 mouse_genomes_project 9 108403169 108406625 + Nprl2 protein_coding retained_intron MGP_CASTEiJ_T0094443.1 MGP_CASTEiJ_G0034249.1 mouse_genomes_project 9 108403185 108404612 + Nprl2 protein_coding retained_intron MGP_CASTEiJ_T0094444.1 MGP_CASTEiJ_G0034249.1 mouse_genomes_project 9 108404900 108405390 + Nprl2 protein_coding retained_intron MGP_CASTEiJ_T0095396.1 MGP_CASTEiJ_G0034419.1 mouse_genomes_project 9 121897109 121899880 + MGP_CASTEiJ_P0095396 Ccr8 protein_coding protein_coding MGP_CASTEiJ_T0093685.1 MGP_CASTEiJ_G0034098.1 mouse_genomes_project 9 87464993 87479271 + MGP_CASTEiJ_P0093685 Prss35 protein_coding protein_coding MGP_CASTEiJ_T0093686.1 MGP_CASTEiJ_G0034098.1 mouse_genomes_project 9 87464993 87479442 + MGP_CASTEiJ_P0093686 Prss35 protein_coding protein_coding MGP_CASTEiJ_T0091455.1 MGP_CASTEiJ_G0033404.1 mouse_genomes_project 9 16766854 16769220 - MGP_CASTEiJ_P0091455 protein_coding protein_coding MGP_CASTEiJ_T0100143.1 MGP_CASTEiJ_G0037056.1 mouse_genomes_project 9 72769565 72769670 + Gm23057 snRNA snRNA MGP_CASTEiJ_T0093788.1 MGP_CASTEiJ_G0034119.1 mouse_genomes_project 9 91462417 91471906 - MGP_CASTEiJ_P0093788 Zic1 protein_coding protein_coding MGP_CASTEiJ_T0093789.1 MGP_CASTEiJ_G0034119.1 mouse_genomes_project 9 91464861 91471906 - MGP_CASTEiJ_P0093789 Zic1 protein_coding protein_coding MGP_CASTEiJ_T0093790.1 MGP_CASTEiJ_G0034119.1 mouse_genomes_project 9 91465907 91469204 - Zic1 protein_coding processed_transcript MGP_CASTEiJ_T0009113.1 MGP_CASTEiJ_G0007336.1 mouse_genomes_project 9 119492043 119500111 + Gm26614 lincRNA lincRNA MGP_CASTEiJ_T0005365.1 MGP_CASTEiJ_G0004538.1 mouse_genomes_project 9 97663012 97683417 + Gm15891 antisense antisense MGP_CASTEiJ_T0094886.1 MGP_CASTEiJ_G0034311.1 mouse_genomes_project 9 109859790 109875825 + MGP_CASTEiJ_P0094886 Uqcrc1 protein_coding protein_coding MGP_CASTEiJ_T0094887.1 MGP_CASTEiJ_G0034311.1 mouse_genomes_project 9 109859871 109870970 + MGP_CASTEiJ_P0094887 Uqcrc1 protein_coding protein_coding MGP_CASTEiJ_T0094888.1 MGP_CASTEiJ_G0034311.1 mouse_genomes_project 9 109859872 109870786 + MGP_CASTEiJ_P0094888 Uqcrc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094889.1 MGP_CASTEiJ_G0034311.1 mouse_genomes_project 9 109860048 109870505 + Uqcrc1 protein_coding retained_intron MGP_CASTEiJ_T0094890.1 MGP_CASTEiJ_G0034311.1 mouse_genomes_project 9 109867122 109871092 + MGP_CASTEiJ_P0094890 Uqcrc1 protein_coding protein_coding MGP_CASTEiJ_T0094891.1 MGP_CASTEiJ_G0034311.1 mouse_genomes_project 9 109872371 109875821 + Uqcrc1 protein_coding retained_intron MGP_CASTEiJ_T0094892.1 MGP_CASTEiJ_G0034311.1 mouse_genomes_project 9 109873609 109875742 + MGP_CASTEiJ_P0094892 Uqcrc1 protein_coding protein_coding MGP_CASTEiJ_T0094893.1 MGP_CASTEiJ_G0034311.1 mouse_genomes_project 9 109874512 109875314 + Uqcrc1 protein_coding retained_intron MGP_CASTEiJ_T0095118.1 MGP_CASTEiJ_G0034345.1 mouse_genomes_project 9 111805957 111834772 + MGP_CASTEiJ_P0095118 Myl3 protein_coding protein_coding MGP_CASTEiJ_T0095119.1 MGP_CASTEiJ_G0034345.1 mouse_genomes_project 9 111825175 111835425 + MGP_CASTEiJ_P0095119 Myl3 protein_coding protein_coding MGP_CASTEiJ_T0095120.1 MGP_CASTEiJ_G0034345.1 mouse_genomes_project 9 111834047 111835415 + Myl3 protein_coding retained_intron MGP_CASTEiJ_T0093698.1 MGP_CASTEiJ_G0034100.1 mouse_genomes_project 9 87742672 87747006 + MGP_CASTEiJ_P0093698 Ripply2 protein_coding protein_coding MGP_CASTEiJ_T0093699.1 MGP_CASTEiJ_G0034100.1 mouse_genomes_project 9 87742771 87747005 + MGP_CASTEiJ_P0093699 Ripply2 protein_coding protein_coding MGP_CASTEiJ_T0094463.1 MGP_CASTEiJ_G0034253.1 mouse_genomes_project 9 108428855 108433685 + MGP_CASTEiJ_P0094463 Hyal2 protein_coding protein_coding MGP_CASTEiJ_T0094464.1 MGP_CASTEiJ_G0034253.1 mouse_genomes_project 9 108428855 108431300 + MGP_CASTEiJ_P0094464 Hyal2 protein_coding protein_coding MGP_CASTEiJ_T0094465.1 MGP_CASTEiJ_G0034253.1 mouse_genomes_project 9 108430022 108433682 + MGP_CASTEiJ_P0094465 Hyal2 protein_coding protein_coding MGP_CASTEiJ_T0094466.1 MGP_CASTEiJ_G0034253.1 mouse_genomes_project 9 108430046 108432869 + MGP_CASTEiJ_P0094466 Hyal2 protein_coding protein_coding MGP_CASTEiJ_T0094467.1 MGP_CASTEiJ_G0034253.1 mouse_genomes_project 9 108430300 108431518 + MGP_CASTEiJ_P0094467 Hyal2 protein_coding protein_coding MGP_CASTEiJ_T0094468.1 MGP_CASTEiJ_G0034253.1 mouse_genomes_project 9 108430710 108433678 + MGP_CASTEiJ_P0094468 Hyal2 protein_coding protein_coding MGP_CASTEiJ_T0094469.1 MGP_CASTEiJ_G0034253.1 mouse_genomes_project 9 108432115 108433109 + Hyal2 protein_coding retained_intron MGP_CASTEiJ_T0091236.1 MGP_CASTEiJ_G0033327.1 mouse_genomes_project 9 3946995 4199840 - MGP_CASTEiJ_P0091236 Dync2h1 protein_coding protein_coding MGP_CASTEiJ_T0091237.1 MGP_CASTEiJ_G0033327.1 mouse_genomes_project 9 3946995 4211650 - MGP_CASTEiJ_P0091237 Dync2h1 protein_coding protein_coding MGP_CASTEiJ_T0091238.1 MGP_CASTEiJ_G0033327.1 mouse_genomes_project 9 3947796 4199751 - MGP_CASTEiJ_P0091238 Dync2h1 protein_coding protein_coding MGP_CASTEiJ_T0091239.1 MGP_CASTEiJ_G0033327.1 mouse_genomes_project 9 3947957 4199821 - MGP_CASTEiJ_P0091239 Dync2h1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091240.1 MGP_CASTEiJ_G0033327.1 mouse_genomes_project 9 3960832 3973821 - Dync2h1 protein_coding retained_intron MGP_CASTEiJ_T0091241.1 MGP_CASTEiJ_G0033327.1 mouse_genomes_project 9 4009491 4199825 - MGP_CASTEiJ_P0091241 Dync2h1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091242.1 MGP_CASTEiJ_G0033327.1 mouse_genomes_project 9 4042893 4123995 - MGP_CASTEiJ_P0091242 Dync2h1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091243.1 MGP_CASTEiJ_G0033327.1 mouse_genomes_project 9 4161467 4199838 - Dync2h1 protein_coding retained_intron MGP_CASTEiJ_T0091244.1 MGP_CASTEiJ_G0033327.1 mouse_genomes_project 9 4174695 4199759 - MGP_CASTEiJ_P0091244 Dync2h1 protein_coding protein_coding MGP_CASTEiJ_T0098668.1 MGP_CASTEiJ_G0035599.1 mouse_genomes_project 9 9842835 9842956 + Gm25365 rRNA rRNA MGP_CASTEiJ_T0091246.1 MGP_CASTEiJ_G0033329.1 mouse_genomes_project 9 4307282 4318174 + MGP_CASTEiJ_P0091246 Mmp13 protein_coding protein_coding MGP_CASTEiJ_T0010792.1 MGP_CASTEiJ_G0008980.1 mouse_genomes_project 9 113272349 113272425 - Mir128-2 miRNA miRNA MGP_CASTEiJ_T0101406.1 MGP_CASTEiJ_G0038319.1 mouse_genomes_project 9 100354977 100355111 + Gm23594 snoRNA snoRNA MGP_CASTEiJ_T0091728.1 MGP_CASTEiJ_G0033510.1 mouse_genomes_project 9 24598151 24665813 + MGP_CASTEiJ_P0091728 Ncapd3 protein_coding protein_coding MGP_CASTEiJ_T0009044.1 MGP_CASTEiJ_G0007284.1 mouse_genomes_project 9 78572100 78575059 + C920006O11Rik lincRNA lincRNA MGP_CASTEiJ_T0091954.1 MGP_CASTEiJ_G0033575.1 mouse_genomes_project 9 35586273 35596004 - MGP_CASTEiJ_P0091954 Tbrg1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091955.1 MGP_CASTEiJ_G0033575.1 mouse_genomes_project 9 35586278 35595942 - Tbrg1 protein_coding retained_intron MGP_CASTEiJ_T0091956.1 MGP_CASTEiJ_G0033575.1 mouse_genomes_project 9 35586278 35596041 - MGP_CASTEiJ_P0091956 Tbrg1 protein_coding protein_coding MGP_CASTEiJ_T0091957.1 MGP_CASTEiJ_G0033575.1 mouse_genomes_project 9 35589011 35595887 - Tbrg1 protein_coding retained_intron MGP_CASTEiJ_T0091958.1 MGP_CASTEiJ_G0033575.1 mouse_genomes_project 9 35590966 35595897 - Tbrg1 protein_coding retained_intron MGP_CASTEiJ_T0005372.1 MGP_CASTEiJ_G0004544.1 mouse_genomes_project 9 104161371 104170134 + 4932413F04Rik antisense antisense MGP_CASTEiJ_T0092968.1 MGP_CASTEiJ_G0033937.1 mouse_genomes_project 9 63562924 63643999 - MGP_CASTEiJ_P0092968 Smad6 protein_coding protein_coding MGP_CASTEiJ_T0092969.1 MGP_CASTEiJ_G0033937.1 mouse_genomes_project 9 63563851 63638918 - Smad6 protein_coding processed_transcript MGP_CASTEiJ_T0092970.1 MGP_CASTEiJ_G0033937.1 mouse_genomes_project 9 63643700 63643972 - MGP_CASTEiJ_P0092970 Smad6 protein_coding protein_coding MGP_CASTEiJ_T0094949.1 MGP_CASTEiJ_G0034321.1 mouse_genomes_project 9 110025527 110051116 + MGP_CASTEiJ_P0094949 Plxnb1 protein_coding protein_coding MGP_CASTEiJ_T0094950.1 MGP_CASTEiJ_G0034321.1 mouse_genomes_project 9 110026095 110030643 + MGP_CASTEiJ_P0094950 Plxnb1 protein_coding protein_coding MGP_CASTEiJ_T0094951.1 MGP_CASTEiJ_G0034321.1 mouse_genomes_project 9 110026853 110030643 + MGP_CASTEiJ_P0094951 Plxnb1 protein_coding protein_coding MGP_CASTEiJ_T0094952.1 MGP_CASTEiJ_G0034321.1 mouse_genomes_project 9 110035160 110039095 + MGP_CASTEiJ_P0094952 Plxnb1 protein_coding protein_coding MGP_CASTEiJ_T0094953.1 MGP_CASTEiJ_G0034321.1 mouse_genomes_project 9 110035709 110037017 + Plxnb1 protein_coding retained_intron MGP_CASTEiJ_T0094954.1 MGP_CASTEiJ_G0034321.1 mouse_genomes_project 9 110036171 110037141 + Plxnb1 protein_coding retained_intron MGP_CASTEiJ_T0094955.1 MGP_CASTEiJ_G0034321.1 mouse_genomes_project 9 110037003 110039124 + Plxnb1 protein_coding retained_intron MGP_CASTEiJ_T0094988.1 MGP_CASTEiJ_G0034330.1 mouse_genomes_project 9 110943184 111105277 + MGP_CASTEiJ_P0094988 Map4 protein_coding protein_coding MGP_CASTEiJ_T0094989.1 MGP_CASTEiJ_G0034330.1 mouse_genomes_project 9 110943522 111023859 + MGP_CASTEiJ_P0094989 Map4 protein_coding protein_coding MGP_CASTEiJ_T0094990.1 MGP_CASTEiJ_G0034330.1 mouse_genomes_project 9 110943586 111105269 + MGP_CASTEiJ_P0094990 Map4 protein_coding protein_coding MGP_CASTEiJ_T0094991.1 MGP_CASTEiJ_G0034330.1 mouse_genomes_project 9 110995009 111021414 + Map4 protein_coding processed_transcript MGP_CASTEiJ_T0094992.1 MGP_CASTEiJ_G0034330.1 mouse_genomes_project 9 111056044 111094154 + MGP_CASTEiJ_P0094992 Map4 protein_coding protein_coding MGP_CASTEiJ_T0094993.1 MGP_CASTEiJ_G0034330.1 mouse_genomes_project 9 111072296 111105268 + MGP_CASTEiJ_P0094993 Map4 protein_coding protein_coding MGP_CASTEiJ_T0094994.1 MGP_CASTEiJ_G0034330.1 mouse_genomes_project 9 111072300 111104495 + MGP_CASTEiJ_P0094994 Map4 protein_coding protein_coding MGP_CASTEiJ_T0094995.1 MGP_CASTEiJ_G0034330.1 mouse_genomes_project 9 111083996 111104492 + MGP_CASTEiJ_P0094995 Map4 protein_coding protein_coding MGP_CASTEiJ_T0094996.1 MGP_CASTEiJ_G0034330.1 mouse_genomes_project 9 111084004 111090200 + Map4 protein_coding processed_transcript MGP_CASTEiJ_T0094997.1 MGP_CASTEiJ_G0034330.1 mouse_genomes_project 9 111088995 111103819 + MGP_CASTEiJ_P0094997 Map4 protein_coding protein_coding MGP_CASTEiJ_T0094998.1 MGP_CASTEiJ_G0034330.1 mouse_genomes_project 9 111088995 111103409 + MGP_CASTEiJ_P0094998 Map4 protein_coding protein_coding MGP_CASTEiJ_T0094999.1 MGP_CASTEiJ_G0034330.1 mouse_genomes_project 9 111090271 111103117 + MGP_CASTEiJ_P0094999 Map4 protein_coding protein_coding MGP_CASTEiJ_T0095000.1 MGP_CASTEiJ_G0034330.1 mouse_genomes_project 9 111090295 111103236 + MGP_CASTEiJ_P0095000 Map4 protein_coding protein_coding MGP_CASTEiJ_T0095001.1 MGP_CASTEiJ_G0034330.1 mouse_genomes_project 9 111098842 111101356 + Map4 protein_coding retained_intron MGP_CASTEiJ_T0095002.1 MGP_CASTEiJ_G0034330.1 mouse_genomes_project 9 111099291 111103472 + MGP_CASTEiJ_P0095002 Map4 protein_coding protein_coding MGP_CASTEiJ_T0095003.1 MGP_CASTEiJ_G0034330.1 mouse_genomes_project 9 111101120 111103819 + MGP_CASTEiJ_P0095003 Map4 protein_coding protein_coding MGP_CASTEiJ_T0100121.1 MGP_CASTEiJ_G0037034.1 mouse_genomes_project 9 44172431 44172538 - Gm22069 snRNA snRNA MGP_CASTEiJ_T0099024.1 MGP_CASTEiJ_G0035942.1 mouse_genomes_project 9 27285533 27287562 - Gm15521 sense_intronic sense_intronic MGP_CASTEiJ_T0091383.1 MGP_CASTEiJ_G0033371.1 mouse_genomes_project 9 12323327 12348000 + MGP_CASTEiJ_P0091383 Vstm5 protein_coding protein_coding MGP_CASTEiJ_T0093443.1 MGP_CASTEiJ_G0034045.1 mouse_genomes_project 9 75730120 75795271 - MGP_CASTEiJ_P0093443 Tmod3 protein_coding protein_coding MGP_CASTEiJ_T0099058.1 MGP_CASTEiJ_G0035971.1 mouse_genomes_project 9 125740742 125757720 - Gm17021 sense_overlapping sense_overlapping MGP_CASTEiJ_T0093142.1 MGP_CASTEiJ_G0033984.1 mouse_genomes_project 9 66652801 66654830 + MGP_CASTEiJ_P0093142 Gm10647 protein_coding protein_coding MGP_CASTEiJ_T0091932.1 MGP_CASTEiJ_G0033566.1 mouse_genomes_project 9 35290582 35309387 + MGP_CASTEiJ_P0091932 Hepacam protein_coding protein_coding MGP_CASTEiJ_T0094622.1 MGP_CASTEiJ_G0034273.1 mouse_genomes_project 9 108892303 108899482 + MGP_CASTEiJ_P0094622 Cdhr4 protein_coding protein_coding MGP_CASTEiJ_T0094623.1 MGP_CASTEiJ_G0034273.1 mouse_genomes_project 9 108895511 108897884 + MGP_CASTEiJ_P0094623 Cdhr4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094624.1 MGP_CASTEiJ_G0034273.1 mouse_genomes_project 9 108895547 108896396 + Cdhr4 protein_coding retained_intron MGP_CASTEiJ_T0094625.1 MGP_CASTEiJ_G0034273.1 mouse_genomes_project 9 108895553 108899470 + Cdhr4 protein_coding retained_intron MGP_CASTEiJ_T0094626.1 MGP_CASTEiJ_G0034273.1 mouse_genomes_project 9 108895577 108896180 + Cdhr4 protein_coding retained_intron MGP_CASTEiJ_T0094627.1 MGP_CASTEiJ_G0034273.1 mouse_genomes_project 9 108895584 108899473 + Cdhr4 protein_coding retained_intron MGP_CASTEiJ_T0094628.1 MGP_CASTEiJ_G0034273.1 mouse_genomes_project 9 108895604 108896752 + Cdhr4 protein_coding retained_intron MGP_CASTEiJ_T0094629.1 MGP_CASTEiJ_G0034273.1 mouse_genomes_project 9 108895727 108897484 + Cdhr4 protein_coding processed_transcript MGP_CASTEiJ_T0094630.1 MGP_CASTEiJ_G0034273.1 mouse_genomes_project 9 108895765 108899482 + MGP_CASTEiJ_P0094630 Cdhr4 protein_coding protein_coding MGP_CASTEiJ_T0094631.1 MGP_CASTEiJ_G0034273.1 mouse_genomes_project 9 108895819 108896979 + Cdhr4 protein_coding retained_intron MGP_CASTEiJ_T0094633.1 MGP_CASTEiJ_G0034273.1 mouse_genomes_project 9 108896437 108899477 + MGP_CASTEiJ_P0094633 Cdhr4 protein_coding protein_coding MGP_CASTEiJ_T0094634.1 MGP_CASTEiJ_G0034273.1 mouse_genomes_project 9 108897193 108899478 + MGP_CASTEiJ_P0094634 Cdhr4 protein_coding protein_coding MGP_CASTEiJ_T0094635.1 MGP_CASTEiJ_G0034273.1 mouse_genomes_project 9 108897414 108899475 + MGP_CASTEiJ_P0094635 Cdhr4 protein_coding protein_coding MGP_CASTEiJ_T0094636.1 MGP_CASTEiJ_G0034273.1 mouse_genomes_project 9 108897499 108899477 + MGP_CASTEiJ_P0094636 Cdhr4 protein_coding protein_coding MGP_CASTEiJ_T0091293.1 MGP_CASTEiJ_G0033346.1 mouse_genomes_project 9 5565130 5685594 + MGP_CASTEiJ_P0091293 Trpc6 protein_coding protein_coding MGP_CASTEiJ_T0091294.1 MGP_CASTEiJ_G0033346.1 mouse_genomes_project 9 5565325 5685702 + MGP_CASTEiJ_P0091294 Trpc6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0015520.1 MGP_CASTEiJ_G0013683.1 mouse_genomes_project 9 97554279 97555375 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010769.1 MGP_CASTEiJ_G0008957.1 mouse_genomes_project 9 72632697 72632823 - Gm28010 miRNA miRNA MGP_CASTEiJ_T0092311.1 MGP_CASTEiJ_G0033746.1 mouse_genomes_project 9 44385790 44411622 + MGP_CASTEiJ_P0092311 Bace1 protein_coding protein_coding MGP_CASTEiJ_T0092312.1 MGP_CASTEiJ_G0033746.1 mouse_genomes_project 9 44385790 44409714 + MGP_CASTEiJ_P0092312 Bace1 protein_coding protein_coding MGP_CASTEiJ_T0092313.1 MGP_CASTEiJ_G0033746.1 mouse_genomes_project 9 44386435 44404400 + MGP_CASTEiJ_P0092313 Bace1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092314.1 MGP_CASTEiJ_G0033746.1 mouse_genomes_project 9 44387113 44401900 + Bace1 protein_coding processed_transcript MGP_CASTEiJ_T0092315.1 MGP_CASTEiJ_G0033746.1 mouse_genomes_project 9 44399915 44409448 + Bace1 protein_coding retained_intron MGP_CASTEiJ_T0092316.1 MGP_CASTEiJ_G0033746.1 mouse_genomes_project 9 44401819 44407586 + MGP_CASTEiJ_P0092316 Bace1 protein_coding protein_coding MGP_CASTEiJ_T0015493.1 MGP_CASTEiJ_G0013656.1 mouse_genomes_project 9 88851888 88852474 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091458.1 MGP_CASTEiJ_G0033407.1 mouse_genomes_project 9 16863596 16885200 + MGP_CASTEiJ_P0091458 Zfp317 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095044.1 MGP_CASTEiJ_G0034334.1 mouse_genomes_project 9 111345200 111360243 + MGP_CASTEiJ_P0095044 Elp6 protein_coding protein_coding MGP_CASTEiJ_T0095045.1 MGP_CASTEiJ_G0034334.1 mouse_genomes_project 9 111345231 111361019 + MGP_CASTEiJ_P0095045 Elp6 protein_coding protein_coding MGP_CASTEiJ_T0095046.1 MGP_CASTEiJ_G0034334.1 mouse_genomes_project 9 111345267 111358489 + MGP_CASTEiJ_P0095046 Elp6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095047.1 MGP_CASTEiJ_G0034334.1 mouse_genomes_project 9 111345523 111355151 + MGP_CASTEiJ_P0095047 Elp6 protein_coding protein_coding MGP_CASTEiJ_T0095048.1 MGP_CASTEiJ_G0034334.1 mouse_genomes_project 9 111348972 111353366 + Elp6 protein_coding retained_intron MGP_CASTEiJ_T0091843.1 MGP_CASTEiJ_G0033538.1 mouse_genomes_project 9 33185761 33193894 + MGP_CASTEiJ_P0091843 Rpusd4 protein_coding protein_coding MGP_CASTEiJ_T0091844.1 MGP_CASTEiJ_G0033538.1 mouse_genomes_project 9 33190152 33193139 + Rpusd4 protein_coding retained_intron MGP_CASTEiJ_T0091845.1 MGP_CASTEiJ_G0033538.1 mouse_genomes_project 9 33190507 33191710 + Rpusd4 protein_coding retained_intron MGP_CASTEiJ_T0091846.1 MGP_CASTEiJ_G0033538.1 mouse_genomes_project 9 33193125 33195576 + MGP_CASTEiJ_P0091846 Rpusd4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094460.1 MGP_CASTEiJ_G0034252.1 mouse_genomes_project 9 108424165 108427023 + MGP_CASTEiJ_P0094460 Tusc2 protein_coding protein_coding MGP_CASTEiJ_T0094461.1 MGP_CASTEiJ_G0034252.1 mouse_genomes_project 9 108424261 108424861 + Tusc2 protein_coding processed_transcript MGP_CASTEiJ_T0094462.1 MGP_CASTEiJ_G0034252.1 mouse_genomes_project 9 108424280 108425908 + MGP_CASTEiJ_P0094462 Tusc2 protein_coding protein_coding MGP_CASTEiJ_T0091990.1 MGP_CASTEiJ_G0033605.1 mouse_genomes_project 9 36429143 36430080 + MGP_CASTEiJ_P0091990 Olfr905 protein_coding protein_coding MGP_CASTEiJ_T0091771.1 MGP_CASTEiJ_G0033523.1 mouse_genomes_project 9 29153150 29188500 + MGP_CASTEiJ_P0091771 Nfrkb protein_coding protein_coding MGP_CASTEiJ_T0091772.1 MGP_CASTEiJ_G0033523.1 mouse_genomes_project 9 29153155 29188500 + MGP_CASTEiJ_P0091772 Nfrkb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091773.1 MGP_CASTEiJ_G0033523.1 mouse_genomes_project 9 29153162 29161682 + MGP_CASTEiJ_P0091773 Nfrkb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091774.1 MGP_CASTEiJ_G0033523.1 mouse_genomes_project 9 29153169 29188509 + MGP_CASTEiJ_P0091774 Nfrkb protein_coding unknown_likely_coding MGP_CASTEiJ_T0091775.1 MGP_CASTEiJ_G0033523.1 mouse_genomes_project 9 29153171 29188500 + MGP_CASTEiJ_P0091775 Nfrkb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091776.1 MGP_CASTEiJ_G0033523.1 mouse_genomes_project 9 29159718 29166122 + Nfrkb protein_coding retained_intron MGP_CASTEiJ_T0091777.1 MGP_CASTEiJ_G0033523.1 mouse_genomes_project 9 29164159 29166094 + Nfrkb protein_coding retained_intron MGP_CASTEiJ_T0091778.1 MGP_CASTEiJ_G0033523.1 mouse_genomes_project 9 29166142 29188500 + Nfrkb protein_coding retained_intron MGP_CASTEiJ_T0091779.1 MGP_CASTEiJ_G0033523.1 mouse_genomes_project 9 29176676 29177716 + Nfrkb protein_coding retained_intron MGP_CASTEiJ_T0094212.1 MGP_CASTEiJ_G0034209.1 mouse_genomes_project 9 106127266 106137631 + MGP_CASTEiJ_P0094212 Aste1 protein_coding protein_coding MGP_CASTEiJ_T0094213.1 MGP_CASTEiJ_G0034209.1 mouse_genomes_project 9 106127274 106134016 + Aste1 protein_coding retained_intron MGP_CASTEiJ_T0094214.1 MGP_CASTEiJ_G0034209.1 mouse_genomes_project 9 106127289 106137344 + Aste1 protein_coding retained_intron MGP_CASTEiJ_T0094215.1 MGP_CASTEiJ_G0034209.1 mouse_genomes_project 9 106127418 106133486 + MGP_CASTEiJ_P0094215 Aste1 protein_coding protein_coding MGP_CASTEiJ_T0094216.1 MGP_CASTEiJ_G0034209.1 mouse_genomes_project 9 106129089 106137050 + MGP_CASTEiJ_P0094216 Aste1 protein_coding protein_coding MGP_CASTEiJ_T0094217.1 MGP_CASTEiJ_G0034209.1 mouse_genomes_project 9 106129687 106137205 + MGP_CASTEiJ_P0094217 Aste1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094218.1 MGP_CASTEiJ_G0034209.1 mouse_genomes_project 9 106129687 106155892 + MGP_CASTEiJ_P0094218 Aste1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094219.1 MGP_CASTEiJ_G0034209.1 mouse_genomes_project 9 106132660 106137205 + Aste1 protein_coding processed_transcript MGP_CASTEiJ_T0094220.1 MGP_CASTEiJ_G0034209.1 mouse_genomes_project 9 106133347 106137631 + MGP_CASTEiJ_P0094220 Aste1 protein_coding protein_coding MGP_CASTEiJ_T0091983.1 MGP_CASTEiJ_G0033598.1 mouse_genomes_project 9 36306747 36307698 + MGP_CASTEiJ_P0091983 Olfr898 protein_coding protein_coding MGP_CASTEiJ_T0095545.1 MGP_CASTEiJ_G0034466.1 mouse_genomes_project 9 125432815 125476829 + MGP_CASTEiJ_P0095545 Limd1 protein_coding protein_coding MGP_CASTEiJ_T0093203.1 MGP_CASTEiJ_G0033997.1 mouse_genomes_project 9 69734982 69738186 - MGP_CASTEiJ_P0093203 Foxb1 protein_coding protein_coding MGP_CASTEiJ_T0011415.1 MGP_CASTEiJ_G0009603.1 mouse_genomes_project 9 107461300 107461560 + Gm26185 misc_RNA misc_RNA MGP_CASTEiJ_T0092025.1 MGP_CASTEiJ_G0033634.1 mouse_genomes_project 9 37616554 37617499 + MGP_CASTEiJ_P0092025 Olfr951 protein_coding protein_coding MGP_CASTEiJ_T0092018.1 MGP_CASTEiJ_G0033627.1 mouse_genomes_project 9 37067999 37068934 - MGP_CASTEiJ_P0092018 Olfr936 protein_coding protein_coding MGP_CASTEiJ_T0092962.1 MGP_CASTEiJ_G0033935.1 mouse_genomes_project 9 63201387 63242414 + MGP_CASTEiJ_P0092962 Aagab protein_coding protein_coding MGP_CASTEiJ_T0092522.1 MGP_CASTEiJ_G0033807.1 mouse_genomes_project 9 50643118 50668012 + Arhgap20 protein_coding retained_intron MGP_CASTEiJ_T0092523.1 MGP_CASTEiJ_G0033807.1 mouse_genomes_project 9 50643126 50706260 + Arhgap20 protein_coding retained_intron MGP_CASTEiJ_T0092524.1 MGP_CASTEiJ_G0033807.1 mouse_genomes_project 9 50643133 50734328 + MGP_CASTEiJ_P0092524 Arhgap20 protein_coding protein_coding MGP_CASTEiJ_T0092525.1 MGP_CASTEiJ_G0033807.1 mouse_genomes_project 9 50643357 50734337 + MGP_CASTEiJ_P0092525 Arhgap20 protein_coding protein_coding MGP_CASTEiJ_T0092526.1 MGP_CASTEiJ_G0033807.1 mouse_genomes_project 9 50696246 50709959 + Arhgap20 protein_coding processed_transcript MGP_CASTEiJ_T0092527.1 MGP_CASTEiJ_G0033807.1 mouse_genomes_project 9 50712357 50729140 + Arhgap20 protein_coding processed_transcript MGP_CASTEiJ_T0100116.1 MGP_CASTEiJ_G0037029.1 mouse_genomes_project 9 35785049 35785248 - Gm24764 snRNA snRNA MGP_CASTEiJ_T0092887.1 MGP_CASTEiJ_G0033917.1 mouse_genomes_project 9 60242805 60259125 - MGP_CASTEiJ_P0092887 Gm9869 protein_coding protein_coding MGP_CASTEiJ_T0002345.1 MGP_CASTEiJ_G0002262.1 mouse_genomes_project 9 97613509 97615389 + TEC TEC MGP_CASTEiJ_T0101405.1 MGP_CASTEiJ_G0038318.1 mouse_genomes_project 9 100166605 100166732 - Gm23949 snoRNA snoRNA MGP_CASTEiJ_T0094295.1 MGP_CASTEiJ_G0034222.1 mouse_genomes_project 9 107168749 107177993 + MGP_CASTEiJ_P0094295 Dusp7 protein_coding protein_coding MGP_CASTEiJ_T0094296.1 MGP_CASTEiJ_G0034222.1 mouse_genomes_project 9 107169726 107170992 + Dusp7 protein_coding processed_transcript MGP_CASTEiJ_T0094297.1 MGP_CASTEiJ_G0034222.1 mouse_genomes_project 9 107170860 107173973 + MGP_CASTEiJ_P0094297 Dusp7 protein_coding protein_coding MGP_CASTEiJ_T0094298.1 MGP_CASTEiJ_G0034222.1 mouse_genomes_project 9 107176888 107177990 + Dusp7 protein_coding processed_transcript MGP_CASTEiJ_T0009000.1 MGP_CASTEiJ_G0007249.1 mouse_genomes_project 9 42551518 42561167 + Gm26737 lincRNA lincRNA MGP_CASTEiJ_T0092030.1 MGP_CASTEiJ_G0033639.1 mouse_genomes_project 9 37718909 37719851 - MGP_CASTEiJ_P0092030 Olfr958 protein_coding protein_coding MGP_CASTEiJ_T0092584.1 MGP_CASTEiJ_G0033832.1 mouse_genomes_project 9 53597480 53656897 - MGP_CASTEiJ_P0092584 Acsbg1 protein_coding protein_coding MGP_CASTEiJ_T0092585.1 MGP_CASTEiJ_G0033832.1 mouse_genomes_project 9 53621870 53636480 - MGP_CASTEiJ_P0092585 Acsbg1 protein_coding protein_coding MGP_CASTEiJ_T0092586.1 MGP_CASTEiJ_G0033832.1 mouse_genomes_project 9 53621896 53640672 - MGP_CASTEiJ_P0092586 Acsbg1 protein_coding protein_coding MGP_CASTEiJ_T0092587.1 MGP_CASTEiJ_G0033832.1 mouse_genomes_project 9 53621916 53656722 - MGP_CASTEiJ_P0092587 Acsbg1 protein_coding protein_coding MGP_CASTEiJ_T0092588.1 MGP_CASTEiJ_G0033832.1 mouse_genomes_project 9 53639508 53640543 - Acsbg1 protein_coding retained_intron MGP_CASTEiJ_T0002275.1 MGP_CASTEiJ_G0002193.1 mouse_genomes_project 9 22244367 22246213 - TEC TEC MGP_CASTEiJ_T0091650.1 MGP_CASTEiJ_G0033482.1 mouse_genomes_project 9 19537879 19539060 - MGP_CASTEiJ_P0091650 Elof1 protein_coding protein_coding MGP_CASTEiJ_T0091651.1 MGP_CASTEiJ_G0033482.1 mouse_genomes_project 9 19537880 19543862 - MGP_CASTEiJ_P0091651 Elof1 protein_coding protein_coding MGP_CASTEiJ_T0092063.1 MGP_CASTEiJ_G0033666.1 mouse_genomes_project 9 38303589 38304705 - MGP_CASTEiJ_P0092063 Olfr985 protein_coding protein_coding MGP_CASTEiJ_T0098418.1 MGP_CASTEiJ_G0035349.1 mouse_genomes_project 9 37859248 37860151 - pseudogene pseudogene MGP_CASTEiJ_T0015437.1 MGP_CASTEiJ_G0013600.1 mouse_genomes_project 9 48998174 49002481 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093151.1 MGP_CASTEiJ_G0033988.1 mouse_genomes_project 9 66823987 66844122 - MGP_CASTEiJ_P0093151 Lactb protein_coding protein_coding MGP_CASTEiJ_T0015529.1 MGP_CASTEiJ_G0013692.1 mouse_genomes_project 9 101925617 101925974 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005409.1 MGP_CASTEiJ_G0004574.1 mouse_genomes_project 9 116614987 116616423 - Gm26962 antisense antisense MGP_CASTEiJ_T0091471.1 MGP_CASTEiJ_G0033420.1 mouse_genomes_project 9 17633148 17644529 - MGP_CASTEiJ_P0091471 Olfr18 protein_coding protein_coding MGP_CASTEiJ_T0098680.1 MGP_CASTEiJ_G0035611.1 mouse_genomes_project 9 102644831 102644949 + n-R5s88 rRNA rRNA MGP_CASTEiJ_T0094948.1 MGP_CASTEiJ_G0034320.1 mouse_genomes_project 9 110012490 110022638 + MGP_CASTEiJ_P0094948 Ccdc51 protein_coding protein_coding MGP_CASTEiJ_T0091414.1 MGP_CASTEiJ_G0033379.1 mouse_genomes_project 9 12958439 13002433 - MGP_CASTEiJ_P0091414 Mtnr1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091415.1 MGP_CASTEiJ_G0033379.1 mouse_genomes_project 9 12990492 13002337 - MGP_CASTEiJ_P0091415 Mtnr1b protein_coding protein_coding MGP_CASTEiJ_T0005415.1 MGP_CASTEiJ_G0004577.1 mouse_genomes_project 9 122814037 122820386 - 4930593C16Rik antisense antisense MGP_CASTEiJ_T0092850.1 MGP_CASTEiJ_G0033911.1 mouse_genomes_project 9 59130665 59319887 + MGP_CASTEiJ_P0092850 Myo9a protein_coding protein_coding MGP_CASTEiJ_T0092851.1 MGP_CASTEiJ_G0033911.1 mouse_genomes_project 9 59130665 59319887 + MGP_CASTEiJ_P0092851 Myo9a protein_coding protein_coding MGP_CASTEiJ_T0092852.1 MGP_CASTEiJ_G0033911.1 mouse_genomes_project 9 59130665 59319887 + MGP_CASTEiJ_P0092852 Myo9a protein_coding protein_coding MGP_CASTEiJ_T0092853.1 MGP_CASTEiJ_G0033911.1 mouse_genomes_project 9 59262130 59276145 + Myo9a protein_coding processed_transcript MGP_CASTEiJ_T0092854.1 MGP_CASTEiJ_G0033911.1 mouse_genomes_project 9 59287177 59296856 + Myo9a protein_coding retained_intron MGP_CASTEiJ_T0092855.1 MGP_CASTEiJ_G0033911.1 mouse_genomes_project 9 59296428 59301012 + Myo9a protein_coding retained_intron MGP_CASTEiJ_T0092856.1 MGP_CASTEiJ_G0033911.1 mouse_genomes_project 9 59297681 59302913 + Myo9a protein_coding retained_intron MGP_CASTEiJ_T0092857.1 MGP_CASTEiJ_G0033911.1 mouse_genomes_project 9 59300259 59301302 + Myo9a protein_coding retained_intron MGP_CASTEiJ_T0015435.1 MGP_CASTEiJ_G0013598.1 mouse_genomes_project 9 43782098 43782334 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0094201.1 MGP_CASTEiJ_G0034206.1 mouse_genomes_project 9 105844845 105847259 - MGP_CASTEiJ_P0094201 Nudt16 protein_coding protein_coding MGP_CASTEiJ_T0094202.1 MGP_CASTEiJ_G0034206.1 mouse_genomes_project 9 105845274 105847752 - MGP_CASTEiJ_P0094202 Nudt16 protein_coding protein_coding MGP_CASTEiJ_T0094203.1 MGP_CASTEiJ_G0034206.1 mouse_genomes_project 9 105845621 105847727 - Nudt16 protein_coding retained_intron MGP_CASTEiJ_T0094204.1 MGP_CASTEiJ_G0034206.1 mouse_genomes_project 9 105845621 105847727 - Nudt16 protein_coding retained_intron MGP_CASTEiJ_T0094205.1 MGP_CASTEiJ_G0034206.1 mouse_genomes_project 9 105846150 105847720 - MGP_CASTEiJ_P0094205 Nudt16 protein_coding protein_coding MGP_CASTEiJ_T0095476.1 MGP_CASTEiJ_G0034439.1 mouse_genomes_project 9 123682402 123692802 - MGP_CASTEiJ_P0095476 Hhatl protein_coding protein_coding MGP_CASTEiJ_T0095477.1 MGP_CASTEiJ_G0034439.1 mouse_genomes_project 9 123682408 123691339 - MGP_CASTEiJ_P0095477 Hhatl protein_coding protein_coding MGP_CASTEiJ_T0091356.1 MGP_CASTEiJ_G0033364.1 mouse_genomes_project 9 11802465 11808671 - MGP_CASTEiJ_P0091356 1700012B09Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091357.1 MGP_CASTEiJ_G0033364.1 mouse_genomes_project 9 11802471 11822312 - MGP_CASTEiJ_P0091357 1700012B09Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091358.1 MGP_CASTEiJ_G0033364.1 mouse_genomes_project 9 11802473 11808627 - MGP_CASTEiJ_P0091358 1700012B09Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091359.1 MGP_CASTEiJ_G0033364.1 mouse_genomes_project 9 11804115 11822329 - MGP_CASTEiJ_P0091359 1700012B09Rik protein_coding protein_coding MGP_CASTEiJ_T0091360.1 MGP_CASTEiJ_G0033364.1 mouse_genomes_project 9 11804115 11822312 - MGP_CASTEiJ_P0091360 1700012B09Rik protein_coding protein_coding MGP_CASTEiJ_T0095145.1 MGP_CASTEiJ_G0034355.1 mouse_genomes_project 9 112025894 112032339 - MGP_CASTEiJ_P0095145 Tdgf1 protein_coding protein_coding MGP_CASTEiJ_T0095146.1 MGP_CASTEiJ_G0034355.1 mouse_genomes_project 9 112026548 112032275 - MGP_CASTEiJ_P0095146 Tdgf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095147.1 MGP_CASTEiJ_G0034355.1 mouse_genomes_project 9 112028488 112032256 - MGP_CASTEiJ_P0095147 Tdgf1 protein_coding protein_coding MGP_CASTEiJ_T0095148.1 MGP_CASTEiJ_G0034355.1 mouse_genomes_project 9 112028862 112031042 - MGP_CASTEiJ_P0095148 Tdgf1 protein_coding protein_coding MGP_CASTEiJ_T0091991.1 MGP_CASTEiJ_G0033606.1 mouse_genomes_project 9 36447202 36448138 + MGP_CASTEiJ_P0091991 Olfr906 protein_coding protein_coding MGP_CASTEiJ_T0002334.1 MGP_CASTEiJ_G0002251.1 mouse_genomes_project 9 91239045 91241890 - TEC TEC MGP_CASTEiJ_T0094029.1 MGP_CASTEiJ_G0034173.1 mouse_genomes_project 9 101003761 101022555 - MGP_CASTEiJ_P0094029 Slc35g2 protein_coding protein_coding MGP_CASTEiJ_T0094030.1 MGP_CASTEiJ_G0034173.1 mouse_genomes_project 9 101003763 101004489 - Slc35g2 protein_coding processed_transcript MGP_CASTEiJ_T0091289.1 MGP_CASTEiJ_G0033343.1 mouse_genomes_project 9 5084717 5104902 - MGP_CASTEiJ_P0091289 9230110C19Rik protein_coding protein_coding MGP_CASTEiJ_T0099026.1 MGP_CASTEiJ_G0035944.1 mouse_genomes_project 9 55327907 55329382 - Gm29322 sense_intronic sense_intronic MGP_CASTEiJ_T0094391.1 MGP_CASTEiJ_G0034241.1 mouse_genomes_project 9 107740847 108072679 - MGP_CASTEiJ_P0094391 Dock3 protein_coding protein_coding MGP_CASTEiJ_T0094392.1 MGP_CASTEiJ_G0034241.1 mouse_genomes_project 9 107741128 107764445 - MGP_CASTEiJ_P0094392 Dock3 protein_coding protein_coding MGP_CASTEiJ_T0094393.1 MGP_CASTEiJ_G0034241.1 mouse_genomes_project 9 107744801 107749835 - MGP_CASTEiJ_P0094393 Dock3 protein_coding protein_coding MGP_CASTEiJ_T0094394.1 MGP_CASTEiJ_G0034241.1 mouse_genomes_project 9 107758070 107760131 - Dock3 protein_coding processed_transcript MGP_CASTEiJ_T0094395.1 MGP_CASTEiJ_G0034241.1 mouse_genomes_project 9 107762802 107764747 - Dock3 protein_coding retained_intron MGP_CASTEiJ_T0094396.1 MGP_CASTEiJ_G0034241.1 mouse_genomes_project 9 107765945 107799337 - MGP_CASTEiJ_P0094396 Dock3 protein_coding protein_coding MGP_CASTEiJ_T0094397.1 MGP_CASTEiJ_G0034241.1 mouse_genomes_project 9 107790934 107814186 - MGP_CASTEiJ_P0094397 Dock3 protein_coding protein_coding MGP_CASTEiJ_T0094398.1 MGP_CASTEiJ_G0034241.1 mouse_genomes_project 9 107872780 107874644 - Dock3 protein_coding retained_intron MGP_CASTEiJ_T0094399.1 MGP_CASTEiJ_G0034241.1 mouse_genomes_project 9 107903437 108072638 - Dock3 protein_coding retained_intron MGP_CASTEiJ_T0094400.1 MGP_CASTEiJ_G0034241.1 mouse_genomes_project 9 107928539 108072626 - Dock3 protein_coding retained_intron MGP_CASTEiJ_T0094401.1 MGP_CASTEiJ_G0034241.1 mouse_genomes_project 9 107955431 108072352 - Dock3 protein_coding retained_intron MGP_CASTEiJ_T0005416.1 MGP_CASTEiJ_G0004578.1 mouse_genomes_project 9 123476780 123493852 + Lyzl4os antisense antisense MGP_CASTEiJ_T0005417.1 MGP_CASTEiJ_G0004578.1 mouse_genomes_project 9 123476803 123504588 + Lyzl4os antisense antisense MGP_CASTEiJ_T0009082.1 MGP_CASTEiJ_G0007313.1 mouse_genomes_project 9 100739555 100741434 - Gm28167 lincRNA lincRNA MGP_CASTEiJ_T0093051.1 MGP_CASTEiJ_G0033964.1 mouse_genomes_project 9 65203536 65233650 + MGP_CASTEiJ_P0093051 Spg21 protein_coding protein_coding MGP_CASTEiJ_T0091368.1 MGP_CASTEiJ_G0033367.1 mouse_genomes_project 9 11921137 11931765 + MGP_CASTEiJ_P0091368 Gpr83 protein_coding protein_coding MGP_CASTEiJ_T0091369.1 MGP_CASTEiJ_G0033367.1 mouse_genomes_project 9 11921166 11988840 + MGP_CASTEiJ_P0091369 Gpr83 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091370.1 MGP_CASTEiJ_G0033367.1 mouse_genomes_project 9 11921181 11931286 + MGP_CASTEiJ_P0091370 Gpr83 protein_coding protein_coding MGP_CASTEiJ_T0091371.1 MGP_CASTEiJ_G0033367.1 mouse_genomes_project 9 11926242 11931765 + Gpr83 protein_coding retained_intron MGP_CASTEiJ_T0009034.1 MGP_CASTEiJ_G0007275.1 mouse_genomes_project 9 72639663 72657101 - 4930509E16Rik lincRNA lincRNA MGP_CASTEiJ_T0091465.1 MGP_CASTEiJ_G0033414.1 mouse_genomes_project 9 17245259 17251186 - MGP_CASTEiJ_P0091465 protein_coding protein_coding MGP_CASTEiJ_T0094112.1 MGP_CASTEiJ_G0034190.1 mouse_genomes_project 9 103763118 103807035 - MGP_CASTEiJ_P0094112 Gm20425 protein_coding protein_coding MGP_CASTEiJ_T0002332.1 MGP_CASTEiJ_G0002249.1 mouse_genomes_project 9 89311604 89315526 - TEC TEC MGP_CASTEiJ_T0091572.1 MGP_CASTEiJ_G0033453.1 mouse_genomes_project 9 18647762 18665528 - MGP_CASTEiJ_P0091572 Ap1m2 protein_coding protein_coding MGP_CASTEiJ_T0091573.1 MGP_CASTEiJ_G0033453.1 mouse_genomes_project 9 18647762 18665528 - MGP_CASTEiJ_P0091573 Ap1m2 protein_coding protein_coding MGP_CASTEiJ_T0093543.1 MGP_CASTEiJ_G0034076.1 mouse_genomes_project 9 80284640 80450089 - MGP_CASTEiJ_P0093543 Filip1 protein_coding protein_coding MGP_CASTEiJ_T0093544.1 MGP_CASTEiJ_G0034076.1 mouse_genomes_project 9 80284646 80301407 - Filip1 protein_coding processed_transcript MGP_CASTEiJ_T0093545.1 MGP_CASTEiJ_G0034076.1 mouse_genomes_project 9 80290236 80434443 - MGP_CASTEiJ_P0093545 Filip1 protein_coding protein_coding MGP_CASTEiJ_T0091377.1 MGP_CASTEiJ_G0033369.1 mouse_genomes_project 9 12058429 12117996 - MGP_CASTEiJ_P0091377 Panx1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091378.1 MGP_CASTEiJ_G0033369.1 mouse_genomes_project 9 12078802 12118373 - MGP_CASTEiJ_P0091378 Panx1 protein_coding protein_coding MGP_CASTEiJ_T0091379.1 MGP_CASTEiJ_G0033369.1 mouse_genomes_project 9 12079426 12118373 - MGP_CASTEiJ_P0091379 Panx1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091380.1 MGP_CASTEiJ_G0033369.1 mouse_genomes_project 9 12081552 12084131 - Panx1 protein_coding retained_intron MGP_CASTEiJ_T0091381.1 MGP_CASTEiJ_G0033369.1 mouse_genomes_project 9 12083708 12116750 - MGP_CASTEiJ_P0091381 Panx1 protein_coding protein_coding MGP_CASTEiJ_T0095318.1 MGP_CASTEiJ_G0034394.1 mouse_genomes_project 9 120154505 120238197 + MGP_CASTEiJ_P0095318 Golga4 protein_coding protein_coding MGP_CASTEiJ_T0095319.1 MGP_CASTEiJ_G0034394.1 mouse_genomes_project 9 120154593 120215508 + MGP_CASTEiJ_P0095319 Golga4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095320.1 MGP_CASTEiJ_G0034394.1 mouse_genomes_project 9 120154673 120238202 + MGP_CASTEiJ_P0095320 Golga4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002305.1 MGP_CASTEiJ_G0002223.1 mouse_genomes_project 9 72860724 72860934 + TEC TEC MGP_CASTEiJ_T0093065.1 MGP_CASTEiJ_G0033969.1 mouse_genomes_project 9 65421844 65448942 + Oaz2 protein_coding processed_transcript MGP_CASTEiJ_T0093066.1 MGP_CASTEiJ_G0033969.1 mouse_genomes_project 9 65423409 65447888 + Oaz2 protein_coding processed_transcript MGP_CASTEiJ_T0093067.1 MGP_CASTEiJ_G0033969.1 mouse_genomes_project 9 65431452 65450359 + MGP_CASTEiJ_P0093067 Oaz2 protein_coding protein_coding MGP_CASTEiJ_T0093068.1 MGP_CASTEiJ_G0033969.1 mouse_genomes_project 9 65431483 65448607 + Oaz2 protein_coding retained_intron MGP_CASTEiJ_T0093069.1 MGP_CASTEiJ_G0033969.1 mouse_genomes_project 9 65431490 65450325 + MGP_CASTEiJ_P0093069 Oaz2 protein_coding protein_coding MGP_CASTEiJ_T0093070.1 MGP_CASTEiJ_G0033969.1 mouse_genomes_project 9 65431495 65448598 + MGP_CASTEiJ_P0093070 Oaz2 protein_coding protein_coding MGP_CASTEiJ_T0093071.1 MGP_CASTEiJ_G0033969.1 mouse_genomes_project 9 65447868 65449577 + MGP_CASTEiJ_P0093071 Oaz2 protein_coding protein_coding MGP_CASTEiJ_T0092132.1 MGP_CASTEiJ_G0033687.1 mouse_genomes_project 9 41480328 41579729 - MGP_CASTEiJ_P0092132 Pou2f3 protein_coding protein_coding MGP_CASTEiJ_T0092133.1 MGP_CASTEiJ_G0033687.1 mouse_genomes_project 9 41480923 41573623 - MGP_CASTEiJ_P0092133 Pou2f3 protein_coding protein_coding MGP_CASTEiJ_T0095445.1 MGP_CASTEiJ_G0034432.1 mouse_genomes_project 9 123467292 123534365 - MGP_CASTEiJ_P0095445 Lyzl4 protein_coding protein_coding MGP_CASTEiJ_T0095446.1 MGP_CASTEiJ_G0034432.1 mouse_genomes_project 9 123467298 123534894 - MGP_CASTEiJ_P0095446 Lyzl4 protein_coding protein_coding MGP_CASTEiJ_T0095447.1 MGP_CASTEiJ_G0034432.1 mouse_genomes_project 9 123473536 123534337 - MGP_CASTEiJ_P0095447 Lyzl4 protein_coding protein_coding MGP_CASTEiJ_T0015498.1 MGP_CASTEiJ_G0013661.1 mouse_genomes_project 9 90850038 90850330 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098673.1 MGP_CASTEiJ_G0035604.1 mouse_genomes_project 9 62042693 62042802 + n-R5s84 rRNA rRNA MGP_CASTEiJ_T0098415.1 MGP_CASTEiJ_G0035346.1 mouse_genomes_project 9 16315771 16316720 + pseudogene pseudogene MGP_CASTEiJ_T0010794.1 MGP_CASTEiJ_G0008982.1 mouse_genomes_project 9 116849512 116849666 - Gm22243 miRNA miRNA MGP_CASTEiJ_T0093101.1 MGP_CASTEiJ_G0033974.1 mouse_genomes_project 9 65845799 65856077 + MGP_CASTEiJ_P0093101 Ppib protein_coding protein_coding MGP_CASTEiJ_T0093102.1 MGP_CASTEiJ_G0033974.1 mouse_genomes_project 9 65845866 65856079 + MGP_CASTEiJ_P0093102 Ppib protein_coding unknown_likely_coding MGP_CASTEiJ_T0093243.1 MGP_CASTEiJ_G0034008.1 mouse_genomes_project 9 70724711 70829834 + MGP_CASTEiJ_P0093243 Adam10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093244.1 MGP_CASTEiJ_G0034008.1 mouse_genomes_project 9 70724711 70831682 + MGP_CASTEiJ_P0093244 Adam10 protein_coding protein_coding MGP_CASTEiJ_T0093245.1 MGP_CASTEiJ_G0034008.1 mouse_genomes_project 9 70724730 70796849 + MGP_CASTEiJ_P0093245 Adam10 protein_coding protein_coding MGP_CASTEiJ_T0093246.1 MGP_CASTEiJ_G0034008.1 mouse_genomes_project 9 70827511 70829830 + Adam10 protein_coding retained_intron MGP_CASTEiJ_T0015461.1 MGP_CASTEiJ_G0013624.1 mouse_genomes_project 9 74558460 74558934 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002342.1 MGP_CASTEiJ_G0002259.1 mouse_genomes_project 9 95578174 95579266 + TEC TEC MGP_CASTEiJ_T0093320.1 MGP_CASTEiJ_G0034018.1 mouse_genomes_project 9 72553343 72564410 + MGP_CASTEiJ_P0093320 Mns1 protein_coding protein_coding MGP_CASTEiJ_T0093321.1 MGP_CASTEiJ_G0034018.1 mouse_genomes_project 9 72553854 72568434 + MGP_CASTEiJ_P0093321 Mns1 protein_coding protein_coding MGP_CASTEiJ_T0093322.1 MGP_CASTEiJ_G0034018.1 mouse_genomes_project 9 72553863 72579680 + MGP_CASTEiJ_P0093322 Mns1 protein_coding protein_coding MGP_CASTEiJ_T0017840.1 MGP_CASTEiJ_G0015078.1 mouse_genomes_project 9 118824384 118826542 + Gm17396 processed_transcript processed_transcript MGP_CASTEiJ_T0101670.1 MGP_CASTEiJ_G0038503.1 mouse_genomes_project 9 56085358 56085917 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0091780.1 MGP_CASTEiJ_G0033524.1 mouse_genomes_project 9 29193473 29235643 - MGP_CASTEiJ_P0091780 Tmem45b protein_coding protein_coding MGP_CASTEiJ_T0005332.1 MGP_CASTEiJ_G0004517.1 mouse_genomes_project 9 72746588 72747416 - Gm27232 antisense antisense MGP_CASTEiJ_T0002324.1 MGP_CASTEiJ_G0002242.1 mouse_genomes_project 9 87261329 87261443 - TEC TEC MGP_CASTEiJ_T0002325.1 MGP_CASTEiJ_G0002242.1 mouse_genomes_project 9 87261329 87261801 - TEC TEC MGP_CASTEiJ_T0010747.1 MGP_CASTEiJ_G0008935.1 mouse_genomes_project 9 42789202 42789343 - Gm44335 miRNA miRNA MGP_CASTEiJ_T0093382.1 MGP_CASTEiJ_G0034029.1 mouse_genomes_project 9 73219173 73276137 + MGP_CASTEiJ_P0093382 Rab27a protein_coding protein_coding MGP_CASTEiJ_T0093383.1 MGP_CASTEiJ_G0034029.1 mouse_genomes_project 9 73219176 73276101 + MGP_CASTEiJ_P0093383 Rab27a protein_coding protein_coding MGP_CASTEiJ_T0093384.1 MGP_CASTEiJ_G0034029.1 mouse_genomes_project 9 73219303 73263919 + Rab27a protein_coding retained_intron MGP_CASTEiJ_T0093385.1 MGP_CASTEiJ_G0034029.1 mouse_genomes_project 9 73273351 73274927 + Rab27a protein_coding retained_intron MGP_CASTEiJ_T0101384.1 MGP_CASTEiJ_G0038297.1 mouse_genomes_project 9 63814881 63814980 + Gm23136 snoRNA snoRNA MGP_CASTEiJ_T0095457.1 MGP_CASTEiJ_G0034435.1 mouse_genomes_project 9 123606090 123608625 + MGP_CASTEiJ_P0095457 Deb1 protein_coding protein_coding MGP_CASTEiJ_T0092278.1 MGP_CASTEiJ_G0033730.1 mouse_genomes_project 9 43487163 43493946 + MGP_CASTEiJ_P0092278 Cd3d protein_coding protein_coding MGP_CASTEiJ_T0091247.1 MGP_CASTEiJ_G0033330.1 mouse_genomes_project 9 4374519 4379933 + MGP_CASTEiJ_P0091247 Mmp12 protein_coding protein_coding MGP_CASTEiJ_T0091248.1 MGP_CASTEiJ_G0033330.1 mouse_genomes_project 9 4377533 4412218 + MGP_CASTEiJ_P0091248 Mmp12 protein_coding protein_coding MGP_CASTEiJ_T0091249.1 MGP_CASTEiJ_G0033330.1 mouse_genomes_project 9 4377533 4391293 + MGP_CASTEiJ_P0091249 Mmp12 protein_coding protein_coding MGP_CASTEiJ_T0091250.1 MGP_CASTEiJ_G0033330.1 mouse_genomes_project 9 4377565 4378494 + Mmp12 protein_coding processed_transcript MGP_CASTEiJ_T0091251.1 MGP_CASTEiJ_G0033330.1 mouse_genomes_project 9 4377565 4388506 + Mmp12 protein_coding retained_intron MGP_CASTEiJ_T0091252.1 MGP_CASTEiJ_G0033330.1 mouse_genomes_project 9 4377565 4389719 + MGP_CASTEiJ_P0091252 Mmp12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091253.1 MGP_CASTEiJ_G0033330.1 mouse_genomes_project 9 4377674 4389533 + MGP_CASTEiJ_P0091253 Mmp12 protein_coding protein_coding MGP_CASTEiJ_T0095321.1 MGP_CASTEiJ_G0034395.1 mouse_genomes_project 9 120262162 120573900 + MGP_CASTEiJ_P0095321 Itga9 protein_coding protein_coding MGP_CASTEiJ_T0095322.1 MGP_CASTEiJ_G0034395.1 mouse_genomes_project 9 120352007 120474488 + Itga9 protein_coding processed_transcript MGP_CASTEiJ_T0095323.1 MGP_CASTEiJ_G0034395.1 mouse_genomes_project 9 120376963 120570627 + MGP_CASTEiJ_P0095323 Itga9 protein_coding protein_coding MGP_CASTEiJ_T0095324.1 MGP_CASTEiJ_G0034395.1 mouse_genomes_project 9 120474540 120513452 + MGP_CASTEiJ_P0095324 Itga9 protein_coding protein_coding MGP_CASTEiJ_T0095325.1 MGP_CASTEiJ_G0034395.1 mouse_genomes_project 9 120509231 120542353 + Itga9 protein_coding processed_transcript MGP_CASTEiJ_T0095326.1 MGP_CASTEiJ_G0034395.1 mouse_genomes_project 9 120542480 120570216 + Itga9 protein_coding processed_transcript MGP_CASTEiJ_T0002365.1 MGP_CASTEiJ_G0002282.1 mouse_genomes_project 9 102798145 102799390 + TEC TEC MGP_CASTEiJ_T0093775.1 MGP_CASTEiJ_G0034117.1 mouse_genomes_project 9 90253311 90292873 + MGP_CASTEiJ_P0093775 Adamts7 protein_coding protein_coding MGP_CASTEiJ_T0093776.1 MGP_CASTEiJ_G0034117.1 mouse_genomes_project 9 90253320 90300782 + MGP_CASTEiJ_P0093776 Adamts7 protein_coding protein_coding MGP_CASTEiJ_T0093777.1 MGP_CASTEiJ_G0034117.1 mouse_genomes_project 9 90253366 90292873 + MGP_CASTEiJ_P0093777 Adamts7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093778.1 MGP_CASTEiJ_G0034117.1 mouse_genomes_project 9 90253444 90292763 + MGP_CASTEiJ_P0093778 Adamts7 protein_coding protein_coding MGP_CASTEiJ_T0093779.1 MGP_CASTEiJ_G0034117.1 mouse_genomes_project 9 90253468 90292875 + MGP_CASTEiJ_P0093779 Adamts7 protein_coding protein_coding MGP_CASTEiJ_T0093780.1 MGP_CASTEiJ_G0034117.1 mouse_genomes_project 9 90281361 90284317 + Adamts7 protein_coding retained_intron MGP_CASTEiJ_T0093781.1 MGP_CASTEiJ_G0034117.1 mouse_genomes_project 9 90283733 90286248 + Adamts7 protein_coding processed_transcript MGP_CASTEiJ_T0093782.1 MGP_CASTEiJ_G0034117.1 mouse_genomes_project 9 90287884 90292870 + Adamts7 protein_coding retained_intron MGP_CASTEiJ_T0093116.1 MGP_CASTEiJ_G0033979.1 mouse_genomes_project 9 66165765 66189986 + protein_coding retained_intron MGP_CASTEiJ_T0093117.1 MGP_CASTEiJ_G0033979.1 mouse_genomes_project 9 66165780 66336802 + MGP_CASTEiJ_P0093117 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093118.1 MGP_CASTEiJ_G0033979.1 mouse_genomes_project 9 66165841 66337253 + MGP_CASTEiJ_P0093118 protein_coding protein_coding MGP_CASTEiJ_T0093119.1 MGP_CASTEiJ_G0033979.1 mouse_genomes_project 9 66264666 66277643 + protein_coding retained_intron MGP_CASTEiJ_T0093120.1 MGP_CASTEiJ_G0033979.1 mouse_genomes_project 9 66276462 66291439 + MGP_CASTEiJ_P0093120 protein_coding protein_coding MGP_CASTEiJ_T0093121.1 MGP_CASTEiJ_G0033979.1 mouse_genomes_project 9 66295358 66304336 + protein_coding retained_intron MGP_CASTEiJ_T0093122.1 MGP_CASTEiJ_G0033979.1 mouse_genomes_project 9 66324250 66329334 + protein_coding retained_intron MGP_CASTEiJ_T0093123.1 MGP_CASTEiJ_G0033979.1 mouse_genomes_project 9 66329070 66336071 + protein_coding retained_intron MGP_CASTEiJ_T0091699.1 MGP_CASTEiJ_G0033501.1 mouse_genomes_project 9 22978372 22981871 - MGP_CASTEiJ_P0091699 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0091304.1 MGP_CASTEiJ_G0033350.1 mouse_genomes_project 9 6657879 7965807 - MGP_CASTEiJ_P0091304 Cntn5 protein_coding protein_coding MGP_CASTEiJ_T0091305.1 MGP_CASTEiJ_G0033350.1 mouse_genomes_project 9 6657957 7965856 - MGP_CASTEiJ_P0091305 Cntn5 protein_coding protein_coding MGP_CASTEiJ_T0091306.1 MGP_CASTEiJ_G0033350.1 mouse_genomes_project 9 6658351 7449127 - MGP_CASTEiJ_P0091306 Cntn5 protein_coding protein_coding MGP_CASTEiJ_T0091307.1 MGP_CASTEiJ_G0033350.1 mouse_genomes_project 9 6658351 7449127 - MGP_CASTEiJ_P0091307 Cntn5 protein_coding protein_coding MGP_CASTEiJ_T0091308.1 MGP_CASTEiJ_G0033350.1 mouse_genomes_project 9 7678417 7965530 - Cntn5 protein_coding retained_intron MGP_CASTEiJ_T0015483.1 MGP_CASTEiJ_G0013646.1 mouse_genomes_project 9 84059494 84059882 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093522.1 MGP_CASTEiJ_G0034070.1 mouse_genomes_project 9 78834991 78835923 - MGP_CASTEiJ_P0093522 Gm17324 protein_coding protein_coding MGP_CASTEiJ_T0093889.1 MGP_CASTEiJ_G0034139.1 mouse_genomes_project 9 96580062 96614472 - MGP_CASTEiJ_P0093889 Atp1b3 protein_coding protein_coding MGP_CASTEiJ_T0093890.1 MGP_CASTEiJ_G0034139.1 mouse_genomes_project 9 96588767 96593835 - Atp1b3 protein_coding retained_intron MGP_CASTEiJ_T0093891.1 MGP_CASTEiJ_G0034139.1 mouse_genomes_project 9 96596056 96599635 - Atp1b3 protein_coding processed_transcript MGP_CASTEiJ_T0091551.1 MGP_CASTEiJ_G0033447.1 mouse_genomes_project 9 18504603 18558635 + MGP_CASTEiJ_P0091551 Pde4a protein_coding protein_coding MGP_CASTEiJ_T0091552.1 MGP_CASTEiJ_G0033447.1 mouse_genomes_project 9 18504696 18573039 + MGP_CASTEiJ_P0091552 Pde4a protein_coding unknown_likely_coding MGP_CASTEiJ_T0091553.1 MGP_CASTEiJ_G0033447.1 mouse_genomes_project 9 18521211 18557012 + Pde4a protein_coding retained_intron MGP_CASTEiJ_T0091554.1 MGP_CASTEiJ_G0033447.1 mouse_genomes_project 9 18523685 18534185 + Pde4a protein_coding retained_intron MGP_CASTEiJ_T0091555.1 MGP_CASTEiJ_G0033447.1 mouse_genomes_project 9 18523687 18557012 + MGP_CASTEiJ_P0091555 Pde4a protein_coding protein_coding MGP_CASTEiJ_T0091556.1 MGP_CASTEiJ_G0033447.1 mouse_genomes_project 9 18532872 18536759 + Pde4a protein_coding retained_intron MGP_CASTEiJ_T0091557.1 MGP_CASTEiJ_G0033447.1 mouse_genomes_project 9 18538569 18557012 + MGP_CASTEiJ_P0091557 Pde4a protein_coding protein_coding MGP_CASTEiJ_T0005359.1 MGP_CASTEiJ_G0004533.1 mouse_genomes_project 9 96241863 96244431 - antisense antisense MGP_CASTEiJ_T0092617.1 MGP_CASTEiJ_G0033844.1 mouse_genomes_project 9 54261322 54326219 - MGP_CASTEiJ_P0092617 Nrg4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092618.1 MGP_CASTEiJ_G0033844.1 mouse_genomes_project 9 54261365 54326151 - MGP_CASTEiJ_P0092618 Nrg4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092619.1 MGP_CASTEiJ_G0033844.1 mouse_genomes_project 9 54263725 54326160 - Nrg4 protein_coding processed_transcript MGP_CASTEiJ_T0092620.1 MGP_CASTEiJ_G0033844.1 mouse_genomes_project 9 54263725 54326166 - MGP_CASTEiJ_P0092620 Nrg4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092621.1 MGP_CASTEiJ_G0033844.1 mouse_genomes_project 9 54263725 54326151 - MGP_CASTEiJ_P0092621 Nrg4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092622.1 MGP_CASTEiJ_G0033844.1 mouse_genomes_project 9 54280636 54326181 - MGP_CASTEiJ_P0092622 Nrg4 protein_coding protein_coding MGP_CASTEiJ_T0092623.1 MGP_CASTEiJ_G0033844.1 mouse_genomes_project 9 54282000 54369327 - Nrg4 protein_coding processed_transcript MGP_CASTEiJ_T0092624.1 MGP_CASTEiJ_G0033844.1 mouse_genomes_project 9 54289809 54326166 - Nrg4 protein_coding processed_transcript MGP_CASTEiJ_T0092625.1 MGP_CASTEiJ_G0033844.1 mouse_genomes_project 9 54299268 54326177 - Nrg4 protein_coding processed_transcript MGP_CASTEiJ_T0092626.1 MGP_CASTEiJ_G0033844.1 mouse_genomes_project 9 54348614 54367657 - Nrg4 protein_coding processed_transcript MGP_CASTEiJ_T0010722.1 MGP_CASTEiJ_G0008910.1 mouse_genomes_project 9 1332874 1332941 - Gm23992 miRNA miRNA MGP_CASTEiJ_T0015536.1 MGP_CASTEiJ_G0013699.1 mouse_genomes_project 9 106294895 106295286 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100102.1 MGP_CASTEiJ_G0037015.1 mouse_genomes_project 9 340128 340232 + Gm23275 snRNA snRNA MGP_CASTEiJ_T0092858.1 MGP_CASTEiJ_G0033912.1 mouse_genomes_project 9 59331189 59338480 - Nr2e3 protein_coding retained_intron MGP_CASTEiJ_T0092859.1 MGP_CASTEiJ_G0033912.1 mouse_genomes_project 9 59331189 59348611 - Nr2e3 protein_coding retained_intron MGP_CASTEiJ_T0092860.1 MGP_CASTEiJ_G0033912.1 mouse_genomes_project 9 59331189 59338563 - MGP_CASTEiJ_P0092860 Nr2e3 protein_coding protein_coding MGP_CASTEiJ_T0092861.1 MGP_CASTEiJ_G0033912.1 mouse_genomes_project 9 59331405 59338556 - Nr2e3 protein_coding retained_intron MGP_CASTEiJ_T0092862.1 MGP_CASTEiJ_G0033912.1 mouse_genomes_project 9 59331546 59338520 - Nr2e3 protein_coding retained_intron MGP_CASTEiJ_T0092863.1 MGP_CASTEiJ_G0033912.1 mouse_genomes_project 9 59335192 59337241 - Nr2e3 protein_coding retained_intron MGP_CASTEiJ_T0092864.1 MGP_CASTEiJ_G0033912.1 mouse_genomes_project 9 59335813 59337844 - Nr2e3 protein_coding processed_transcript MGP_CASTEiJ_T0092865.1 MGP_CASTEiJ_G0033912.1 mouse_genomes_project 9 59337047 59348607 - Nr2e3 protein_coding processed_transcript MGP_CASTEiJ_T0092866.1 MGP_CASTEiJ_G0033912.1 mouse_genomes_project 9 59337167 59338520 - Nr2e3 protein_coding retained_intron MGP_CASTEiJ_T0094676.1 MGP_CASTEiJ_G0034280.1 mouse_genomes_project 9 108990937 109000046 - MGP_CASTEiJ_P0094676 Apeh protein_coding protein_coding MGP_CASTEiJ_T0094677.1 MGP_CASTEiJ_G0034280.1 mouse_genomes_project 9 108990947 108991559 - Apeh protein_coding retained_intron MGP_CASTEiJ_T0094678.1 MGP_CASTEiJ_G0034280.1 mouse_genomes_project 9 108990947 108999979 - Apeh protein_coding retained_intron MGP_CASTEiJ_T0094679.1 MGP_CASTEiJ_G0034280.1 mouse_genomes_project 9 108991444 108991999 - Apeh protein_coding retained_intron MGP_CASTEiJ_T0094680.1 MGP_CASTEiJ_G0034280.1 mouse_genomes_project 9 108991678 108994039 - Apeh protein_coding retained_intron MGP_CASTEiJ_T0094681.1 MGP_CASTEiJ_G0034280.1 mouse_genomes_project 9 108992306 108999989 - Apeh protein_coding retained_intron MGP_CASTEiJ_T0094682.1 MGP_CASTEiJ_G0034280.1 mouse_genomes_project 9 108997861 108999533 - Apeh protein_coding retained_intron MGP_CASTEiJ_T0094683.1 MGP_CASTEiJ_G0034280.1 mouse_genomes_project 9 108998140 108999992 - MGP_CASTEiJ_P0094683 Apeh protein_coding protein_coding MGP_CASTEiJ_T0092572.1 MGP_CASTEiJ_G0033828.1 mouse_genomes_project 9 53344845 53491725 - MGP_CASTEiJ_P0092572 Dmxl2 protein_coding protein_coding MGP_CASTEiJ_T0092573.1 MGP_CASTEiJ_G0033828.1 mouse_genomes_project 9 53344851 53363952 - Dmxl2 protein_coding retained_intron MGP_CASTEiJ_T0092574.1 MGP_CASTEiJ_G0033828.1 mouse_genomes_project 9 53344947 53432729 - MGP_CASTEiJ_P0092574 Dmxl2 protein_coding protein_coding MGP_CASTEiJ_T0092575.1 MGP_CASTEiJ_G0033828.1 mouse_genomes_project 9 53345798 53491595 - MGP_CASTEiJ_P0092575 Dmxl2 protein_coding protein_coding MGP_CASTEiJ_T0092576.1 MGP_CASTEiJ_G0033828.1 mouse_genomes_project 9 53401651 53462943 - MGP_CASTEiJ_P0092576 Dmxl2 protein_coding protein_coding MGP_CASTEiJ_T0092577.1 MGP_CASTEiJ_G0033828.1 mouse_genomes_project 9 53409266 53491670 - Dmxl2 protein_coding retained_intron MGP_CASTEiJ_T0092578.1 MGP_CASTEiJ_G0033828.1 mouse_genomes_project 9 53432639 53434310 - Dmxl2 protein_coding processed_transcript MGP_CASTEiJ_T0092579.1 MGP_CASTEiJ_G0033828.1 mouse_genomes_project 9 53462629 53491859 - MGP_CASTEiJ_P0092579 Dmxl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0102610.1 MGP_CASTEiJ_G0039334.1 mouse_genomes_project 9 19699749 19700796 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0101390.1 MGP_CASTEiJ_G0038303.1 mouse_genomes_project 9 70157709 70157840 - Gm24257 snoRNA snoRNA MGP_CASTEiJ_T0094474.1 MGP_CASTEiJ_G0034255.1 mouse_genomes_project 9 108439800 108446186 + MGP_CASTEiJ_P0094474 Nat6 protein_coding protein_coding MGP_CASTEiJ_T0094475.1 MGP_CASTEiJ_G0034255.1 mouse_genomes_project 9 108439800 108446186 + MGP_CASTEiJ_P0094475 Nat6 protein_coding protein_coding MGP_CASTEiJ_T0094476.1 MGP_CASTEiJ_G0034255.1 mouse_genomes_project 9 108439800 108446186 + MGP_CASTEiJ_P0094476 Nat6 protein_coding protein_coding MGP_CASTEiJ_T0094477.1 MGP_CASTEiJ_G0034255.1 mouse_genomes_project 9 108439800 108446186 + MGP_CASTEiJ_P0094477 Nat6 protein_coding protein_coding MGP_CASTEiJ_T0094478.1 MGP_CASTEiJ_G0034255.1 mouse_genomes_project 9 108439800 108446186 + MGP_CASTEiJ_P0094478 Nat6 protein_coding protein_coding MGP_CASTEiJ_T0094479.1 MGP_CASTEiJ_G0034255.1 mouse_genomes_project 9 108439800 108446186 + MGP_CASTEiJ_P0094479 Nat6 protein_coding protein_coding MGP_CASTEiJ_T0094481.1 MGP_CASTEiJ_G0034255.1 mouse_genomes_project 9 108441030 108446717 + MGP_CASTEiJ_P0094481 Nat6 protein_coding protein_coding MGP_CASTEiJ_T0010762.1 MGP_CASTEiJ_G0008950.1 mouse_genomes_project 9 64401506 64401613 - miRNA miRNA MGP_CASTEiJ_T0092537.1 MGP_CASTEiJ_G0033813.1 mouse_genomes_project 9 52241520 52322068 + MGP_CASTEiJ_P0092537 Exph5 protein_coding protein_coding MGP_CASTEiJ_T0092538.1 MGP_CASTEiJ_G0033813.1 mouse_genomes_project 9 52282094 52313496 + Exph5 protein_coding retained_intron MGP_CASTEiJ_T0094712.1 MGP_CASTEiJ_G0034288.1 mouse_genomes_project 9 109278497 109323333 + MGP_CASTEiJ_P0094712 Usp4 protein_coding protein_coding MGP_CASTEiJ_T0094713.1 MGP_CASTEiJ_G0034288.1 mouse_genomes_project 9 109278518 109316781 + MGP_CASTEiJ_P0094713 Usp4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094714.1 MGP_CASTEiJ_G0034288.1 mouse_genomes_project 9 109278541 109288497 + Usp4 protein_coding retained_intron MGP_CASTEiJ_T0094715.1 MGP_CASTEiJ_G0034288.1 mouse_genomes_project 9 109278557 109323308 + MGP_CASTEiJ_P0094715 Usp4 protein_coding protein_coding MGP_CASTEiJ_T0094716.1 MGP_CASTEiJ_G0034288.1 mouse_genomes_project 9 109287085 109288612 + Usp4 protein_coding processed_transcript MGP_CASTEiJ_T0094717.1 MGP_CASTEiJ_G0034288.1 mouse_genomes_project 9 109290064 109293103 + Usp4 protein_coding retained_intron MGP_CASTEiJ_T0094718.1 MGP_CASTEiJ_G0034288.1 mouse_genomes_project 9 109298178 109300491 + Usp4 protein_coding retained_intron MGP_CASTEiJ_T0094719.1 MGP_CASTEiJ_G0034288.1 mouse_genomes_project 9 109302949 109323047 + MGP_CASTEiJ_P0094719 Usp4 protein_coding protein_coding MGP_CASTEiJ_T0094720.1 MGP_CASTEiJ_G0034288.1 mouse_genomes_project 9 109311449 109322580 + MGP_CASTEiJ_P0094720 Usp4 protein_coding protein_coding MGP_CASTEiJ_T0094721.1 MGP_CASTEiJ_G0034288.1 mouse_genomes_project 9 109321667 109323033 + Usp4 protein_coding retained_intron MGP_CASTEiJ_T0015454.1 MGP_CASTEiJ_G0013617.1 mouse_genomes_project 9 72217400 72218205 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091996.1 MGP_CASTEiJ_G0033611.1 mouse_genomes_project 9 36622718 36623651 - MGP_CASTEiJ_P0091996 Olfr916 protein_coding protein_coding MGP_CASTEiJ_T0092317.1 MGP_CASTEiJ_G0033747.1 mouse_genomes_project 9 44410643 44461222 - MGP_CASTEiJ_P0092317 Rnf214 protein_coding protein_coding MGP_CASTEiJ_T0092318.1 MGP_CASTEiJ_G0033747.1 mouse_genomes_project 9 44410913 44461230 - MGP_CASTEiJ_P0092318 Rnf214 protein_coding protein_coding MGP_CASTEiJ_T0092319.1 MGP_CASTEiJ_G0033747.1 mouse_genomes_project 9 44410913 44460760 - MGP_CASTEiJ_P0092319 Rnf214 protein_coding protein_coding MGP_CASTEiJ_T0092320.1 MGP_CASTEiJ_G0033747.1 mouse_genomes_project 9 44411512 44460726 - Rnf214 protein_coding retained_intron MGP_CASTEiJ_T0092321.1 MGP_CASTEiJ_G0033747.1 mouse_genomes_project 9 44411521 44461214 - MGP_CASTEiJ_P0092321 Rnf214 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092322.1 MGP_CASTEiJ_G0033747.1 mouse_genomes_project 9 44412056 44461247 - MGP_CASTEiJ_P0092322 Rnf214 protein_coding protein_coding MGP_CASTEiJ_T0092323.1 MGP_CASTEiJ_G0033747.1 mouse_genomes_project 9 44416122 44416731 - Rnf214 protein_coding retained_intron MGP_CASTEiJ_T0092324.1 MGP_CASTEiJ_G0033747.1 mouse_genomes_project 9 44418801 44421018 - Rnf214 protein_coding retained_intron MGP_CASTEiJ_T0092325.1 MGP_CASTEiJ_G0033747.1 mouse_genomes_project 9 44441991 44451921 - Rnf214 protein_coding retained_intron MGP_CASTEiJ_T0092326.1 MGP_CASTEiJ_G0033747.1 mouse_genomes_project 9 44442286 44460740 - MGP_CASTEiJ_P0092326 Rnf214 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092327.1 MGP_CASTEiJ_G0033747.1 mouse_genomes_project 9 44449418 44453368 - Rnf214 protein_coding retained_intron MGP_CASTEiJ_T0002361.1 MGP_CASTEiJ_G0002278.1 mouse_genomes_project 9 102419076 102421344 - TEC TEC MGP_CASTEiJ_T0015494.1 MGP_CASTEiJ_G0013657.1 mouse_genomes_project 9 88980843 88981665 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015479.1 MGP_CASTEiJ_G0013642.1 mouse_genomes_project 9 81521839 81522709 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0094056.1 MGP_CASTEiJ_G0034177.1 mouse_genomes_project 9 101598783 101744821 - MGP_CASTEiJ_P0094056 Ppp2r3a protein_coding protein_coding MGP_CASTEiJ_T0094057.1 MGP_CASTEiJ_G0034177.1 mouse_genomes_project 9 101598985 101687735 - MGP_CASTEiJ_P0094057 Ppp2r3a protein_coding protein_coding MGP_CASTEiJ_T0094058.1 MGP_CASTEiJ_G0034177.1 mouse_genomes_project 9 101601607 101620295 - Ppp2r3a protein_coding processed_transcript MGP_CASTEiJ_T0094059.1 MGP_CASTEiJ_G0034177.1 mouse_genomes_project 9 101617670 101687513 - Ppp2r3a protein_coding retained_intron MGP_CASTEiJ_T0094060.1 MGP_CASTEiJ_G0034177.1 mouse_genomes_project 9 101678694 101687667 - Ppp2r3a protein_coding retained_intron MGP_CASTEiJ_T0094061.1 MGP_CASTEiJ_G0034177.1 mouse_genomes_project 9 101686126 101690185 - Ppp2r3a protein_coding retained_intron MGP_CASTEiJ_T0094062.1 MGP_CASTEiJ_G0034177.1 mouse_genomes_project 9 101695845 101701566 - Ppp2r3a protein_coding processed_transcript MGP_CASTEiJ_T0009039.1 MGP_CASTEiJ_G0007280.1 mouse_genomes_project 9 75032094 75034566 - Gm28182 lincRNA lincRNA MGP_CASTEiJ_T0092352.1 MGP_CASTEiJ_G0033753.1 mouse_genomes_project 9 44794641 44796528 + MGP_CASTEiJ_P0092352 Apoa1 protein_coding protein_coding MGP_CASTEiJ_T0092353.1 MGP_CASTEiJ_G0033753.1 mouse_genomes_project 9 44794782 44796035 + Apoa1 protein_coding retained_intron MGP_CASTEiJ_T0017800.1 MGP_CASTEiJ_G0015062.1 mouse_genomes_project 9 80254643 80268935 + 4930429F24Rik processed_transcript processed_transcript MGP_CASTEiJ_T0015443.1 MGP_CASTEiJ_G0013606.1 mouse_genomes_project 9 58828561 58829036 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095359.1 MGP_CASTEiJ_G0034403.1 mouse_genomes_project 9 120960555 121049406 - MGP_CASTEiJ_P0095359 Oxsr1 protein_coding protein_coding MGP_CASTEiJ_T0095360.1 MGP_CASTEiJ_G0034403.1 mouse_genomes_project 9 120962791 121049301 - MGP_CASTEiJ_P0095360 Oxsr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095361.1 MGP_CASTEiJ_G0034403.1 mouse_genomes_project 9 120963266 120965525 - Oxsr1 protein_coding retained_intron MGP_CASTEiJ_T0095362.1 MGP_CASTEiJ_G0034403.1 mouse_genomes_project 9 120964930 120986929 - MGP_CASTEiJ_P0095362 Oxsr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093047.1 MGP_CASTEiJ_G0033963.1 mouse_genomes_project 9 65176995 65194087 + MGP_CASTEiJ_P0093047 Mtfmt protein_coding protein_coding MGP_CASTEiJ_T0093048.1 MGP_CASTEiJ_G0033963.1 mouse_genomes_project 9 65177001 65193449 + Mtfmt protein_coding retained_intron MGP_CASTEiJ_T0093049.1 MGP_CASTEiJ_G0033963.1 mouse_genomes_project 9 65178241 65188321 + Mtfmt protein_coding processed_transcript MGP_CASTEiJ_T0093050.1 MGP_CASTEiJ_G0033963.1 mouse_genomes_project 9 65184568 65193157 + Mtfmt protein_coding retained_intron MGP_CASTEiJ_T0094005.1 MGP_CASTEiJ_G0034167.1 mouse_genomes_project 9 100017982 100031847 + MGP_CASTEiJ_P0094005 A4gnt protein_coding protein_coding MGP_CASTEiJ_T0092031.1 MGP_CASTEiJ_G0033640.1 mouse_genomes_project 9 37743419 37744474 - MGP_CASTEiJ_P0092031 Olfr959 protein_coding protein_coding MGP_CASTEiJ_T0092819.1 MGP_CASTEiJ_G0033900.1 mouse_genomes_project 9 58177985 58346934 - MGP_CASTEiJ_P0092819 Neo1 protein_coding protein_coding MGP_CASTEiJ_T0092820.1 MGP_CASTEiJ_G0033900.1 mouse_genomes_project 9 58178027 58346621 - MGP_CASTEiJ_P0092820 Neo1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092821.1 MGP_CASTEiJ_G0033900.1 mouse_genomes_project 9 58185149 58346654 - MGP_CASTEiJ_P0092821 Neo1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0094314.1 MGP_CASTEiJ_G0034225.1 mouse_genomes_project 9 107258641 107262457 + MGP_CASTEiJ_P0094314 Abhd14b protein_coding protein_coding MGP_CASTEiJ_T0094315.1 MGP_CASTEiJ_G0034225.1 mouse_genomes_project 9 107258645 107262482 + MGP_CASTEiJ_P0094315 Abhd14b protein_coding protein_coding MGP_CASTEiJ_T0094316.1 MGP_CASTEiJ_G0034225.1 mouse_genomes_project 9 107259057 107262980 + MGP_CASTEiJ_P0094316 Abhd14b protein_coding protein_coding MGP_CASTEiJ_T0094317.1 MGP_CASTEiJ_G0034225.1 mouse_genomes_project 9 107259488 107263792 + MGP_CASTEiJ_P0094317 Abhd14b protein_coding protein_coding MGP_CASTEiJ_T0094318.1 MGP_CASTEiJ_G0034225.1 mouse_genomes_project 9 107259523 107262948 + MGP_CASTEiJ_P0094318 Abhd14b protein_coding protein_coding MGP_CASTEiJ_T0094319.1 MGP_CASTEiJ_G0034225.1 mouse_genomes_project 9 107259562 107262920 + MGP_CASTEiJ_P0094319 Abhd14b protein_coding protein_coding MGP_CASTEiJ_T0091254.1 MGP_CASTEiJ_G0033331.1 mouse_genomes_project 9 4409574 4420081 - MGP_CASTEiJ_P0091254 Mmp1b protein_coding protein_coding MGP_CASTEiJ_T0092832.1 MGP_CASTEiJ_G0033904.1 mouse_genomes_project 9 58877243 58884024 - MGP_CASTEiJ_P0092832 Tmem202 protein_coding protein_coding MGP_CASTEiJ_T0010772.1 MGP_CASTEiJ_G0008960.1 mouse_genomes_project 9 89879363 89879432 - Mir184 miRNA miRNA MGP_CASTEiJ_T0091411.1 MGP_CASTEiJ_G0033378.1 mouse_genomes_project 9 12833626 12864922 + MGP_CASTEiJ_P0091411 Slc36a4 protein_coding protein_coding MGP_CASTEiJ_T0091412.1 MGP_CASTEiJ_G0033378.1 mouse_genomes_project 9 12833627 12868731 + MGP_CASTEiJ_P0091412 Slc36a4 protein_coding protein_coding MGP_CASTEiJ_T0091413.1 MGP_CASTEiJ_G0033378.1 mouse_genomes_project 9 12833646 12871841 + MGP_CASTEiJ_P0091413 Slc36a4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092152.1 MGP_CASTEiJ_G0033696.1 mouse_genomes_project 9 42540072 42547522 + MGP_CASTEiJ_P0092152 Mfrp protein_coding protein_coding MGP_CASTEiJ_T0092153.1 MGP_CASTEiJ_G0033696.1 mouse_genomes_project 9 42540081 42544866 + MGP_CASTEiJ_P0092153 Mfrp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092154.1 MGP_CASTEiJ_G0033696.1 mouse_genomes_project 9 42540097 42547519 + MGP_CASTEiJ_P0092154 Mfrp protein_coding protein_coding MGP_CASTEiJ_T0092155.1 MGP_CASTEiJ_G0033696.1 mouse_genomes_project 9 42540113 42547519 + MGP_CASTEiJ_P0092155 Mfrp protein_coding protein_coding MGP_CASTEiJ_T0092156.1 MGP_CASTEiJ_G0033696.1 mouse_genomes_project 9 42540131 42541644 + MGP_CASTEiJ_P0092156 Mfrp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092157.1 MGP_CASTEiJ_G0033696.1 mouse_genomes_project 9 42543522 42544768 + MGP_CASTEiJ_P0092157 Mfrp protein_coding protein_coding MGP_CASTEiJ_T0101351.1 MGP_CASTEiJ_G0038264.1 mouse_genomes_project 9 12409466 12409588 + Gm25500 snoRNA snoRNA MGP_CASTEiJ_T0005360.1 MGP_CASTEiJ_G0004534.1 mouse_genomes_project 9 96252920 96267361 - Gm28085 antisense antisense MGP_CASTEiJ_T0091890.1 MGP_CASTEiJ_G0033559.1 mouse_genomes_project 9 34606122 34631263 - MGP_CASTEiJ_P0091890 Stt3a protein_coding protein_coding MGP_CASTEiJ_T0091891.1 MGP_CASTEiJ_G0033559.1 mouse_genomes_project 9 34606622 34642543 - MGP_CASTEiJ_P0091891 Stt3a protein_coding protein_coding MGP_CASTEiJ_T0091892.1 MGP_CASTEiJ_G0033559.1 mouse_genomes_project 9 34628596 34642508 - MGP_CASTEiJ_P0091892 Stt3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091893.1 MGP_CASTEiJ_G0033559.1 mouse_genomes_project 9 34633932 34634939 - Stt3a protein_coding retained_intron MGP_CASTEiJ_T0091894.1 MGP_CASTEiJ_G0033559.1 mouse_genomes_project 9 34634358 34642239 - MGP_CASTEiJ_P0091894 Stt3a protein_coding protein_coding MGP_CASTEiJ_T0091895.1 MGP_CASTEiJ_G0033559.1 mouse_genomes_project 9 34637514 34642462 - Stt3a protein_coding retained_intron MGP_CASTEiJ_T0091896.1 MGP_CASTEiJ_G0033559.1 mouse_genomes_project 9 34637734 34642505 - Stt3a protein_coding retained_intron MGP_CASTEiJ_T0095194.1 MGP_CASTEiJ_G0034363.1 mouse_genomes_project 9 112419703 112519704 + MGP_CASTEiJ_P0095194 Trank1 protein_coding protein_coding MGP_CASTEiJ_T0095195.1 MGP_CASTEiJ_G0034363.1 mouse_genomes_project 9 112419904 112481003 + Trank1 protein_coding processed_transcript MGP_CASTEiJ_T0095196.1 MGP_CASTEiJ_G0034363.1 mouse_genomes_project 9 112420060 112464331 + MGP_CASTEiJ_P0095196 Trank1 protein_coding protein_coding MGP_CASTEiJ_T0095197.1 MGP_CASTEiJ_G0034363.1 mouse_genomes_project 9 112420193 112508624 + MGP_CASTEiJ_P0095197 Trank1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095198.1 MGP_CASTEiJ_G0034363.1 mouse_genomes_project 9 112498486 112519704 + Trank1 protein_coding processed_transcript MGP_CASTEiJ_T0095199.1 MGP_CASTEiJ_G0034363.1 mouse_genomes_project 9 112498549 112513159 + Trank1 protein_coding processed_transcript MGP_CASTEiJ_T0095200.1 MGP_CASTEiJ_G0034363.1 mouse_genomes_project 9 112498554 112509285 + Trank1 protein_coding processed_transcript MGP_CASTEiJ_T0095201.1 MGP_CASTEiJ_G0034363.1 mouse_genomes_project 9 112510285 112514078 + Trank1 protein_coding retained_intron MGP_CASTEiJ_T0091298.1 MGP_CASTEiJ_G0033348.1 mouse_genomes_project 9 5971986 5975937 + MGP_CASTEiJ_P0091298 Gm16485 protein_coding protein_coding MGP_CASTEiJ_T0093042.1 MGP_CASTEiJ_G0033959.1 mouse_genomes_project 9 65098050 65121735 + MGP_CASTEiJ_P0093042 Ubap1l protein_coding protein_coding MGP_CASTEiJ_T0000310.1 MGP_CASTEiJ_G0000259.1 mouse_genomes_project 9 125036634 125036701 + mt-Tc Mt_tRNA Mt_tRNA MGP_CASTEiJ_T0015444.1 MGP_CASTEiJ_G0013607.1 mouse_genomes_project 9 59147460 59147947 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091700.1 MGP_CASTEiJ_G0033502.1 mouse_genomes_project 9 23073456 23202951 + MGP_CASTEiJ_P0091700 Eepd1 protein_coding protein_coding MGP_CASTEiJ_T0091701.1 MGP_CASTEiJ_G0033502.1 mouse_genomes_project 9 23073797 23115978 + MGP_CASTEiJ_P0091701 Eepd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091702.1 MGP_CASTEiJ_G0033502.1 mouse_genomes_project 9 23074824 23079273 + Eepd1 protein_coding processed_transcript MGP_CASTEiJ_T0092362.1 MGP_CASTEiJ_G0033757.1 mouse_genomes_project 9 44846099 44855609 + MGP_CASTEiJ_P0092362 Zpr1 protein_coding protein_coding MGP_CASTEiJ_T0092363.1 MGP_CASTEiJ_G0033757.1 mouse_genomes_project 9 44846099 44856781 + MGP_CASTEiJ_P0092363 Zpr1 protein_coding protein_coding MGP_CASTEiJ_T0092364.1 MGP_CASTEiJ_G0033757.1 mouse_genomes_project 9 44846191 44848693 + MGP_CASTEiJ_P0092364 Zpr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092365.1 MGP_CASTEiJ_G0033757.1 mouse_genomes_project 9 44846534 44849638 + Zpr1 protein_coding retained_intron MGP_CASTEiJ_T0092366.1 MGP_CASTEiJ_G0033757.1 mouse_genomes_project 9 44848360 44849513 + Zpr1 protein_coding retained_intron MGP_CASTEiJ_T0092367.1 MGP_CASTEiJ_G0033757.1 mouse_genomes_project 9 44849037 44850555 + Zpr1 protein_coding retained_intron MGP_CASTEiJ_T0092024.1 MGP_CASTEiJ_G0033633.1 mouse_genomes_project 9 37443040 37444006 - MGP_CASTEiJ_P0092024 Olfr948 protein_coding protein_coding MGP_CASTEiJ_T0009061.1 MGP_CASTEiJ_G0007297.1 mouse_genomes_project 9 90942651 90946219 - Gm28703 lincRNA lincRNA MGP_CASTEiJ_T0092469.1 MGP_CASTEiJ_G0033794.1 mouse_genomes_project 9 49586965 49590867 + MGP_CASTEiJ_P0092469 Cryab protein_coding protein_coding MGP_CASTEiJ_T0092184.1 MGP_CASTEiJ_G0033703.1 mouse_genomes_project 9 42716591 42722014 - Abcg4 protein_coding retained_intron MGP_CASTEiJ_T0092185.1 MGP_CASTEiJ_G0033703.1 mouse_genomes_project 9 42716591 42731833 - MGP_CASTEiJ_P0092185 Abcg4 protein_coding protein_coding MGP_CASTEiJ_T0092186.1 MGP_CASTEiJ_G0033703.1 mouse_genomes_project 9 42716593 42732902 - MGP_CASTEiJ_P0092186 Abcg4 protein_coding protein_coding MGP_CASTEiJ_T0092187.1 MGP_CASTEiJ_G0033703.1 mouse_genomes_project 9 42717855 42723238 - Abcg4 protein_coding retained_intron MGP_CASTEiJ_T0092188.1 MGP_CASTEiJ_G0033703.1 mouse_genomes_project 9 42718498 42723000 - MGP_CASTEiJ_P0092188 Abcg4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092189.1 MGP_CASTEiJ_G0033703.1 mouse_genomes_project 9 42720482 42731825 - Abcg4 protein_coding processed_transcript MGP_CASTEiJ_T0092190.1 MGP_CASTEiJ_G0033703.1 mouse_genomes_project 9 42720914 42723191 - Abcg4 protein_coding retained_intron MGP_CASTEiJ_T0092191.1 MGP_CASTEiJ_G0033703.1 mouse_genomes_project 9 42724044 42725068 - Abcg4 protein_coding retained_intron MGP_CASTEiJ_T0092192.1 MGP_CASTEiJ_G0033703.1 mouse_genomes_project 9 42725255 42732644 - MGP_CASTEiJ_P0092192 Abcg4 protein_coding protein_coding MGP_CASTEiJ_T0092193.1 MGP_CASTEiJ_G0033703.1 mouse_genomes_project 9 42725318 42732425 - MGP_CASTEiJ_P0092193 Abcg4 protein_coding protein_coding MGP_CASTEiJ_T0093804.1 MGP_CASTEiJ_G0034122.1 mouse_genomes_project 9 92375317 92399615 + MGP_CASTEiJ_P0093804 Plscr1 protein_coding protein_coding MGP_CASTEiJ_T0093805.1 MGP_CASTEiJ_G0034122.1 mouse_genomes_project 9 92375908 92399432 + MGP_CASTEiJ_P0093805 Plscr1 protein_coding protein_coding MGP_CASTEiJ_T0093806.1 MGP_CASTEiJ_G0034122.1 mouse_genomes_project 9 92393789 92399434 + Plscr1 protein_coding retained_intron MGP_CASTEiJ_T0005373.1 MGP_CASTEiJ_G0004545.1 mouse_genomes_project 9 105933383 105936145 + Gm20643 antisense antisense MGP_CASTEiJ_T0095260.1 MGP_CASTEiJ_G0034373.1 mouse_genomes_project 9 115345801 115389699 + MGP_CASTEiJ_P0095260 Susd5 protein_coding protein_coding MGP_CASTEiJ_T0017779.1 MGP_CASTEiJ_G0015053.1 mouse_genomes_project 9 56224804 56243743 - Gm10658 processed_transcript processed_transcript MGP_CASTEiJ_T0017780.1 MGP_CASTEiJ_G0015053.1 mouse_genomes_project 9 56225380 56243902 - Gm10658 processed_transcript processed_transcript MGP_CASTEiJ_T0093143.1 MGP_CASTEiJ_G0033985.1 mouse_genomes_project 9 66689239 66696853 - MGP_CASTEiJ_P0093143 protein_coding protein_coding MGP_CASTEiJ_T0094156.1 MGP_CASTEiJ_G0034198.1 mouse_genomes_project 9 104676646 104715192 + MGP_CASTEiJ_P0094156 Gm28305 protein_coding protein_coding MGP_CASTEiJ_T0093044.1 MGP_CASTEiJ_G0033961.1 mouse_genomes_project 9 65140990 65157601 + MGP_CASTEiJ_P0093044 Rasl12 protein_coding protein_coding MGP_CASTEiJ_T0093045.1 MGP_CASTEiJ_G0033961.1 mouse_genomes_project 9 65140990 65155178 + MGP_CASTEiJ_P0093045 Rasl12 protein_coding protein_coding MGP_CASTEiJ_T0092532.1 MGP_CASTEiJ_G0033810.1 mouse_genomes_project 9 51004242 51063546 - MGP_CASTEiJ_P0092532 Zc3h12c protein_coding protein_coding MGP_CASTEiJ_T0092533.1 MGP_CASTEiJ_G0033810.1 mouse_genomes_project 9 51007659 51063960 - MGP_CASTEiJ_P0092533 Zc3h12c protein_coding unknown_likely_coding MGP_CASTEiJ_T0009017.1 MGP_CASTEiJ_G0007263.1 mouse_genomes_project 9 57743054 57760099 + 4930461G14Rik lincRNA lincRNA MGP_CASTEiJ_T0015540.1 MGP_CASTEiJ_G0013703.1 mouse_genomes_project 9 109071114 109071612 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002312.1 MGP_CASTEiJ_G0002230.1 mouse_genomes_project 9 73724727 73726740 - TEC TEC MGP_CASTEiJ_T0093678.1 MGP_CASTEiJ_G0034096.1 mouse_genomes_project 9 87286225 87288967 + MGP_CASTEiJ_P0093678 Rwdd2a protein_coding protein_coding MGP_CASTEiJ_T0093679.1 MGP_CASTEiJ_G0034096.1 mouse_genomes_project 9 87286250 87289133 + MGP_CASTEiJ_P0093679 Rwdd2a protein_coding protein_coding MGP_CASTEiJ_T0093680.1 MGP_CASTEiJ_G0034096.1 mouse_genomes_project 9 87286287 87289074 + MGP_CASTEiJ_P0093680 Rwdd2a protein_coding protein_coding MGP_CASTEiJ_T0095287.1 MGP_CASTEiJ_G0034387.1 mouse_genomes_project 9 116662630 116735760 - MGP_CASTEiJ_P0095287 Stt3b protein_coding protein_coding MGP_CASTEiJ_T0091685.1 MGP_CASTEiJ_G0033495.1 mouse_genomes_project 9 21937412 22031871 - MGP_CASTEiJ_P0091685 Dpy19l1 protein_coding protein_coding MGP_CASTEiJ_T0091686.1 MGP_CASTEiJ_G0033495.1 mouse_genomes_project 9 21937436 22031871 - MGP_CASTEiJ_P0091686 Dpy19l1 protein_coding protein_coding MGP_CASTEiJ_T0091687.1 MGP_CASTEiJ_G0033495.1 mouse_genomes_project 9 21937682 21950154 - Dpy19l1 protein_coding retained_intron MGP_CASTEiJ_T0091688.1 MGP_CASTEiJ_G0033495.1 mouse_genomes_project 9 21940620 22032041 - MGP_CASTEiJ_P0091688 Dpy19l1 protein_coding protein_coding MGP_CASTEiJ_T0091689.1 MGP_CASTEiJ_G0033495.1 mouse_genomes_project 9 21948483 21952579 - Dpy19l1 protein_coding retained_intron MGP_CASTEiJ_T0091690.1 MGP_CASTEiJ_G0033495.1 mouse_genomes_project 9 22010300 22025897 - Dpy19l1 protein_coding processed_transcript MGP_CASTEiJ_T0015476.1 MGP_CASTEiJ_G0013639.1 mouse_genomes_project 9 80308149 80308428 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092997.1 MGP_CASTEiJ_G0033944.1 mouse_genomes_project 9 63928442 63954145 + MGP_CASTEiJ_P0092997 Tipin protein_coding protein_coding MGP_CASTEiJ_T0101393.1 MGP_CASTEiJ_G0038306.1 mouse_genomes_project 9 74956027 74956170 + Gm22315 snoRNA snoRNA MGP_CASTEiJ_T0091781.1 MGP_CASTEiJ_G0033525.1 mouse_genomes_project 9 29629562 29699867 - MGP_CASTEiJ_P0091781 Barx2 protein_coding protein_coding MGP_CASTEiJ_T0091994.1 MGP_CASTEiJ_G0033609.1 mouse_genomes_project 9 36550973 36553357 + MGP_CASTEiJ_P0091994 Olfr913 protein_coding protein_coding MGP_CASTEiJ_T0092135.1 MGP_CASTEiJ_G0033689.1 mouse_genomes_project 9 41632167 41652806 + MGP_CASTEiJ_P0092135 protein_coding protein_coding MGP_CASTEiJ_T0093440.1 MGP_CASTEiJ_G0034043.1 mouse_genomes_project 9 75665289 75669846 - MGP_CASTEiJ_P0093440 A130057D12Rik protein_coding protein_coding MGP_CASTEiJ_T0092774.1 MGP_CASTEiJ_G0033889.1 mouse_genomes_project 9 57423792 57426086 - MGP_CASTEiJ_P0092774 Islr protein_coding protein_coding MGP_CASTEiJ_T0092775.1 MGP_CASTEiJ_G0033889.1 mouse_genomes_project 9 57423792 57426753 - MGP_CASTEiJ_P0092775 Islr protein_coding protein_coding MGP_CASTEiJ_T0093451.1 MGP_CASTEiJ_G0034050.1 mouse_genomes_project 9 76267100 76396515 + MGP_CASTEiJ_P0093451 Hmgcll1 protein_coding protein_coding MGP_CASTEiJ_T0093452.1 MGP_CASTEiJ_G0034050.1 mouse_genomes_project 9 76267100 76396515 + MGP_CASTEiJ_P0093452 Hmgcll1 protein_coding protein_coding MGP_CASTEiJ_T0093453.1 MGP_CASTEiJ_G0034050.1 mouse_genomes_project 9 76267226 76394354 + MGP_CASTEiJ_P0093453 Hmgcll1 protein_coding protein_coding MGP_CASTEiJ_T0093454.1 MGP_CASTEiJ_G0034050.1 mouse_genomes_project 9 76267256 76331234 + Hmgcll1 protein_coding retained_intron MGP_CASTEiJ_T0093455.1 MGP_CASTEiJ_G0034050.1 mouse_genomes_project 9 76267257 76327927 + Hmgcll1 protein_coding retained_intron MGP_CASTEiJ_T0093456.1 MGP_CASTEiJ_G0034050.1 mouse_genomes_project 9 76267296 76394265 + MGP_CASTEiJ_P0093456 Hmgcll1 protein_coding protein_coding MGP_CASTEiJ_T0100145.1 MGP_CASTEiJ_G0037058.1 mouse_genomes_project 9 74556831 74556946 + Gm24141 snRNA snRNA MGP_CASTEiJ_T0002395.1 MGP_CASTEiJ_G0002312.1 mouse_genomes_project 9 111971877 111974685 - TEC TEC MGP_CASTEiJ_T0093434.1 MGP_CASTEiJ_G0034041.1 mouse_genomes_project 9 75565122 75568962 + MGP_CASTEiJ_P0093434 Bcl2l10 protein_coding protein_coding MGP_CASTEiJ_T0015496.1 MGP_CASTEiJ_G0013659.1 mouse_genomes_project 9 90114851 90115554 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010752.1 MGP_CASTEiJ_G0008940.1 mouse_genomes_project 9 49943755 49943832 - Mir34c miRNA miRNA MGP_CASTEiJ_T0092048.1 MGP_CASTEiJ_G0033651.1 mouse_genomes_project 9 37953550 37954495 - MGP_CASTEiJ_P0092048 protein_coding protein_coding MGP_CASTEiJ_T0015438.1 MGP_CASTEiJ_G0013601.1 mouse_genomes_project 9 54347696 54348791 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015473.1 MGP_CASTEiJ_G0013636.1 mouse_genomes_project 9 77639997 77640399 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010741.1 MGP_CASTEiJ_G0008929.1 mouse_genomes_project 9 37069966 37070042 - Gm25529 miRNA miRNA MGP_CASTEiJ_T0094725.1 MGP_CASTEiJ_G0034291.1 mouse_genomes_project 9 109371919 109383167 + MGP_CASTEiJ_P0094725 BC048562 protein_coding protein_coding MGP_CASTEiJ_T0094726.1 MGP_CASTEiJ_G0034291.1 mouse_genomes_project 9 109371931 109382967 + BC048562 protein_coding processed_transcript MGP_CASTEiJ_T0099028.1 MGP_CASTEiJ_G0035946.1 mouse_genomes_project 9 100981527 100981971 - Gm28586 sense_intronic sense_intronic MGP_CASTEiJ_T0101360.1 MGP_CASTEiJ_G0038273.1 mouse_genomes_project 9 18213773 18213858 + Gm24067 snoRNA snoRNA MGP_CASTEiJ_T0094962.1 MGP_CASTEiJ_G0034325.1 mouse_genomes_project 9 110438995 110541813 - MGP_CASTEiJ_P0094962 protein_coding protein_coding MGP_CASTEiJ_T0005301.1 MGP_CASTEiJ_G0004499.1 mouse_genomes_project 9 50713410 50754801 - Arhgap20os antisense antisense MGP_CASTEiJ_T0005302.1 MGP_CASTEiJ_G0004499.1 mouse_genomes_project 9 50720163 50754740 - Arhgap20os antisense antisense MGP_CASTEiJ_T0005303.1 MGP_CASTEiJ_G0004499.1 mouse_genomes_project 9 50720171 50754800 - Arhgap20os antisense antisense MGP_CASTEiJ_T0005304.1 MGP_CASTEiJ_G0004499.1 mouse_genomes_project 9 50721027 50754725 - Arhgap20os antisense antisense MGP_CASTEiJ_T0091385.1 MGP_CASTEiJ_G0033373.1 mouse_genomes_project 9 12374098 12396700 - MGP_CASTEiJ_P0091385 4931406C07Rik protein_coding protein_coding MGP_CASTEiJ_T0091386.1 MGP_CASTEiJ_G0033373.1 mouse_genomes_project 9 12374098 12402670 - MGP_CASTEiJ_P0091386 4931406C07Rik protein_coding protein_coding MGP_CASTEiJ_T0091387.1 MGP_CASTEiJ_G0033373.1 mouse_genomes_project 9 12374098 12402389 - MGP_CASTEiJ_P0091387 4931406C07Rik protein_coding protein_coding MGP_CASTEiJ_T0091388.1 MGP_CASTEiJ_G0033373.1 mouse_genomes_project 9 12374120 12402577 - MGP_CASTEiJ_P0091388 4931406C07Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0015488.1 MGP_CASTEiJ_G0013651.1 mouse_genomes_project 9 87016184 87016704 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009084.1 MGP_CASTEiJ_G0007315.1 mouse_genomes_project 9 101836567 101843580 + Gm28979 lincRNA lincRNA MGP_CASTEiJ_T0091666.1 MGP_CASTEiJ_G0033492.1 mouse_genomes_project 9 19945237 20147912 + MGP_CASTEiJ_P0091666 Bbs9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091667.1 MGP_CASTEiJ_G0033492.1 mouse_genomes_project 9 19945293 20375341 + MGP_CASTEiJ_P0091667 Bbs9 protein_coding protein_coding MGP_CASTEiJ_T0091668.1 MGP_CASTEiJ_G0033492.1 mouse_genomes_project 9 19945300 20375335 + MGP_CASTEiJ_P0091668 Bbs9 protein_coding protein_coding MGP_CASTEiJ_T0091669.1 MGP_CASTEiJ_G0033492.1 mouse_genomes_project 9 19945309 19988634 + MGP_CASTEiJ_P0091669 Bbs9 protein_coding protein_coding MGP_CASTEiJ_T0091670.1 MGP_CASTEiJ_G0033492.1 mouse_genomes_project 9 19945309 20375335 + MGP_CASTEiJ_P0091670 Bbs9 protein_coding protein_coding MGP_CASTEiJ_T0091671.1 MGP_CASTEiJ_G0033492.1 mouse_genomes_project 9 19945445 19988680 + MGP_CASTEiJ_P0091671 Bbs9 protein_coding protein_coding MGP_CASTEiJ_T0091672.1 MGP_CASTEiJ_G0033492.1 mouse_genomes_project 9 19961813 20375341 + MGP_CASTEiJ_P0091672 Bbs9 protein_coding protein_coding MGP_CASTEiJ_T0091673.1 MGP_CASTEiJ_G0033492.1 mouse_genomes_project 9 19986964 20058854 + Bbs9 protein_coding processed_transcript MGP_CASTEiJ_T0091674.1 MGP_CASTEiJ_G0033492.1 mouse_genomes_project 9 20052029 20111564 + Bbs9 protein_coding processed_transcript MGP_CASTEiJ_T0091675.1 MGP_CASTEiJ_G0033492.1 mouse_genomes_project 9 20119366 20375341 + MGP_CASTEiJ_P0091675 Bbs9 protein_coding protein_coding MGP_CASTEiJ_T0091676.1 MGP_CASTEiJ_G0033492.1 mouse_genomes_project 9 20127369 20375341 + MGP_CASTEiJ_P0091676 Bbs9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091677.1 MGP_CASTEiJ_G0033492.1 mouse_genomes_project 9 20142485 20163331 + Bbs9 protein_coding retained_intron MGP_CASTEiJ_T0091678.1 MGP_CASTEiJ_G0033492.1 mouse_genomes_project 9 20161568 20375335 + Bbs9 protein_coding retained_intron MGP_CASTEiJ_T0093197.1 MGP_CASTEiJ_G0033996.1 mouse_genomes_project 9 69408425 69448008 + MGP_CASTEiJ_P0093197 Anxa2 protein_coding protein_coding MGP_CASTEiJ_T0093198.1 MGP_CASTEiJ_G0033996.1 mouse_genomes_project 9 69408521 69441371 + MGP_CASTEiJ_P0093198 Anxa2 protein_coding protein_coding MGP_CASTEiJ_T0093199.1 MGP_CASTEiJ_G0033996.1 mouse_genomes_project 9 69408871 69439975 + MGP_CASTEiJ_P0093199 Anxa2 protein_coding protein_coding MGP_CASTEiJ_T0093200.1 MGP_CASTEiJ_G0033996.1 mouse_genomes_project 9 69434698 69448008 + Anxa2 protein_coding retained_intron MGP_CASTEiJ_T0093201.1 MGP_CASTEiJ_G0033996.1 mouse_genomes_project 9 69436259 69447726 + MGP_CASTEiJ_P0093201 Anxa2 protein_coding protein_coding MGP_CASTEiJ_T0093202.1 MGP_CASTEiJ_G0033996.1 mouse_genomes_project 9 69442896 69444223 + Anxa2 protein_coding retained_intron MGP_CASTEiJ_T0095327.1 MGP_CASTEiJ_G0034396.1 mouse_genomes_project 9 120598987 120722374 + MGP_CASTEiJ_P0095327 Ctdspl protein_coding protein_coding MGP_CASTEiJ_T0095328.1 MGP_CASTEiJ_G0034396.1 mouse_genomes_project 9 120600405 120719025 + MGP_CASTEiJ_P0095328 Ctdspl protein_coding protein_coding MGP_CASTEiJ_T0095329.1 MGP_CASTEiJ_G0034396.1 mouse_genomes_project 9 120603378 120708935 + Ctdspl protein_coding processed_transcript MGP_CASTEiJ_T0095330.1 MGP_CASTEiJ_G0034396.1 mouse_genomes_project 9 120708307 120719285 + Ctdspl protein_coding retained_intron MGP_CASTEiJ_T0092682.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56300166 56312165 + MGP_CASTEiJ_P0092682 Man2c1 protein_coding protein_coding MGP_CASTEiJ_T0092683.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56300166 56303596 + MGP_CASTEiJ_P0092683 Man2c1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092684.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56300244 56306236 + MGP_CASTEiJ_P0092684 Man2c1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092685.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56300244 56310153 + MGP_CASTEiJ_P0092685 Man2c1 protein_coding protein_coding MGP_CASTEiJ_T0092686.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56300246 56304572 + Man2c1 protein_coding retained_intron MGP_CASTEiJ_T0092687.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56300246 56311646 + MGP_CASTEiJ_P0092687 Man2c1 protein_coding protein_coding MGP_CASTEiJ_T0092688.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56300253 56300730 + Man2c1 protein_coding processed_transcript MGP_CASTEiJ_T0092689.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56300262 56308845 + MGP_CASTEiJ_P0092689 Man2c1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092690.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56300262 56311647 + MGP_CASTEiJ_P0092690 Man2c1 protein_coding protein_coding MGP_CASTEiJ_T0092691.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56300262 56307250 + MGP_CASTEiJ_P0092691 Man2c1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092692.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56300850 56304546 + Man2c1 protein_coding retained_intron MGP_CASTEiJ_T0092693.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56304383 56306970 + Man2c1 protein_coding retained_intron MGP_CASTEiJ_T0092694.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56305032 56306443 + MGP_CASTEiJ_P0092694 Man2c1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092695.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56306184 56307284 + Man2c1 protein_coding retained_intron MGP_CASTEiJ_T0092696.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56307489 56310171 + MGP_CASTEiJ_P0092696 Man2c1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092697.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56307872 56309854 + MGP_CASTEiJ_P0092697 Man2c1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092698.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56308314 56309436 + Man2c1 protein_coding retained_intron MGP_CASTEiJ_T0092699.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56308946 56311656 + Man2c1 protein_coding retained_intron MGP_CASTEiJ_T0092700.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56308946 56310155 + Man2c1 protein_coding retained_intron MGP_CASTEiJ_T0092701.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56309319 56310622 + Man2c1 protein_coding retained_intron MGP_CASTEiJ_T0092702.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56309720 56311650 + Man2c1 protein_coding retained_intron MGP_CASTEiJ_T0092703.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56310125 56311656 + Man2c1 protein_coding retained_intron MGP_CASTEiJ_T0092704.1 MGP_CASTEiJ_G0033863.1 mouse_genomes_project 9 56310820 56311650 + Man2c1 protein_coding retained_intron MGP_CASTEiJ_T0091525.1 MGP_CASTEiJ_G0033431.1 mouse_genomes_project 9 18142557 18150190 + MGP_CASTEiJ_P0091525 Rdh8 protein_coding protein_coding MGP_CASTEiJ_T0094602.1 MGP_CASTEiJ_G0034270.1 mouse_genomes_project 9 108875433 108876000 + Uba7 protein_coding processed_transcript MGP_CASTEiJ_T0094603.1 MGP_CASTEiJ_G0034270.1 mouse_genomes_project 9 108875462 108883984 + MGP_CASTEiJ_P0094603 Uba7 protein_coding protein_coding MGP_CASTEiJ_T0094604.1 MGP_CASTEiJ_G0034270.1 mouse_genomes_project 9 108875498 108883984 + Uba7 protein_coding retained_intron MGP_CASTEiJ_T0094605.1 MGP_CASTEiJ_G0034270.1 mouse_genomes_project 9 108875503 108883984 + Uba7 protein_coding retained_intron MGP_CASTEiJ_T0094606.1 MGP_CASTEiJ_G0034270.1 mouse_genomes_project 9 108875510 108880417 + Uba7 protein_coding retained_intron MGP_CASTEiJ_T0094607.1 MGP_CASTEiJ_G0034270.1 mouse_genomes_project 9 108875534 108876079 + Uba7 protein_coding processed_transcript MGP_CASTEiJ_T0094608.1 MGP_CASTEiJ_G0034270.1 mouse_genomes_project 9 108875534 108883984 + Uba7 protein_coding retained_intron MGP_CASTEiJ_T0094609.1 MGP_CASTEiJ_G0034270.1 mouse_genomes_project 9 108875583 108883986 + MGP_CASTEiJ_P0094609 Uba7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094610.1 MGP_CASTEiJ_G0034270.1 mouse_genomes_project 9 108875884 108883988 + MGP_CASTEiJ_P0094610 Uba7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094611.1 MGP_CASTEiJ_G0034270.1 mouse_genomes_project 9 108876236 108876895 + Uba7 protein_coding retained_intron MGP_CASTEiJ_T0094612.1 MGP_CASTEiJ_G0034270.1 mouse_genomes_project 9 108876819 108877453 + Uba7 protein_coding retained_intron MGP_CASTEiJ_T0094613.1 MGP_CASTEiJ_G0034270.1 mouse_genomes_project 9 108879656 108882712 + Uba7 protein_coding retained_intron MGP_CASTEiJ_T0094614.1 MGP_CASTEiJ_G0034270.1 mouse_genomes_project 9 108880808 108883132 + Uba7 protein_coding retained_intron MGP_CASTEiJ_T0094615.1 MGP_CASTEiJ_G0034270.1 mouse_genomes_project 9 108882957 108883981 + Uba7 protein_coding retained_intron MGP_CASTEiJ_T0094616.1 MGP_CASTEiJ_G0034270.1 mouse_genomes_project 9 108882967 108883879 + Uba7 protein_coding retained_intron MGP_CASTEiJ_T0091652.1 MGP_CASTEiJ_G0033483.1 mouse_genomes_project 9 19553439 19558353 - MGP_CASTEiJ_P0091652 Acp5 protein_coding protein_coding MGP_CASTEiJ_T0091653.1 MGP_CASTEiJ_G0033483.1 mouse_genomes_project 9 19553439 19562281 - MGP_CASTEiJ_P0091653 Acp5 protein_coding protein_coding MGP_CASTEiJ_T0091654.1 MGP_CASTEiJ_G0033483.1 mouse_genomes_project 9 19553439 19557088 - MGP_CASTEiJ_P0091654 Acp5 protein_coding protein_coding MGP_CASTEiJ_T0015489.1 MGP_CASTEiJ_G0013652.1 mouse_genomes_project 9 88123306 88123784 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093251.1 MGP_CASTEiJ_G0034010.1 mouse_genomes_project 9 71168379 71223683 - MGP_CASTEiJ_P0093251 Aqp9 protein_coding protein_coding MGP_CASTEiJ_T0093252.1 MGP_CASTEiJ_G0034010.1 mouse_genomes_project 9 71216036 71220240 - Aqp9 protein_coding processed_transcript MGP_CASTEiJ_T0093253.1 MGP_CASTEiJ_G0034010.1 mouse_genomes_project 9 71216092 71222916 - Aqp9 protein_coding processed_transcript MGP_CASTEiJ_T0093254.1 MGP_CASTEiJ_G0034010.1 mouse_genomes_project 9 71217547 71223708 - Aqp9 protein_coding processed_transcript MGP_CASTEiJ_T0093255.1 MGP_CASTEiJ_G0034010.1 mouse_genomes_project 9 71217547 71222656 - Aqp9 protein_coding processed_transcript MGP_CASTEiJ_T0093256.1 MGP_CASTEiJ_G0034010.1 mouse_genomes_project 9 71217548 71223703 - Aqp9 protein_coding processed_transcript MGP_CASTEiJ_T0093257.1 MGP_CASTEiJ_G0034010.1 mouse_genomes_project 9 71220154 71222872 - Aqp9 protein_coding processed_transcript MGP_CASTEiJ_T0092209.1 MGP_CASTEiJ_G0033711.1 mouse_genomes_project 9 42853354 42859380 + MGP_CASTEiJ_P0092209 Slc37a4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092210.1 MGP_CASTEiJ_G0033711.1 mouse_genomes_project 9 42854587 42859373 + MGP_CASTEiJ_P0092210 Slc37a4 protein_coding protein_coding MGP_CASTEiJ_T0093839.1 MGP_CASTEiJ_G0034132.1 mouse_genomes_project 9 95836334 95899844 + MGP_CASTEiJ_P0093839 Pcolce2 protein_coding protein_coding MGP_CASTEiJ_T0093840.1 MGP_CASTEiJ_G0034132.1 mouse_genomes_project 9 95882137 95896449 + Pcolce2 protein_coding processed_transcript MGP_CASTEiJ_T0091869.1 MGP_CASTEiJ_G0033549.1 mouse_genomes_project 9 33685495 33687075 - MGP_CASTEiJ_P0091869 Gm17727 protein_coding protein_coding MGP_CASTEiJ_T0095394.1 MGP_CASTEiJ_G0034418.1 mouse_genomes_project 9 121810096 121819929 - MGP_CASTEiJ_P0095394 Xirp1 protein_coding protein_coding MGP_CASTEiJ_T0095585.1 MGP_CASTEiJ_G0034480.1 mouse_genomes_project 9 126176845 126184994 - MGP_CASTEiJ_P0095585 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095586.1 MGP_CASTEiJ_G0034480.1 mouse_genomes_project 9 126179112 126179366 - MGP_CASTEiJ_P0095586 protein_coding protein_coding MGP_CASTEiJ_T0098672.1 MGP_CASTEiJ_G0035603.1 mouse_genomes_project 9 59442161 59442272 - Gm23668 rRNA rRNA MGP_CASTEiJ_T0101382.1 MGP_CASTEiJ_G0038295.1 mouse_genomes_project 9 63813452 63813551 + Snord16a snoRNA snoRNA MGP_CASTEiJ_T0091861.1 MGP_CASTEiJ_G0033544.1 mouse_genomes_project 9 33523724 33528083 - MGP_CASTEiJ_P0091861 Pate4 protein_coding protein_coding MGP_CASTEiJ_T0094934.1 MGP_CASTEiJ_G0034317.1 mouse_genomes_project 9 109987832 109989639 - MGP_CASTEiJ_P0094934 protein_coding protein_coding MGP_CASTEiJ_T0094936.1 MGP_CASTEiJ_G0034317.1 mouse_genomes_project 9 109987837 109989151 - MGP_CASTEiJ_P0094936 protein_coding protein_coding MGP_CASTEiJ_T0009005.1 MGP_CASTEiJ_G0007253.1 mouse_genomes_project 9 44906944 44909906 - 4930448E22Rik lincRNA lincRNA MGP_CASTEiJ_T0091836.1 MGP_CASTEiJ_G0033537.1 mouse_genomes_project 9 33118260 33185673 - MGP_CASTEiJ_P0091836 Fam118b protein_coding protein_coding MGP_CASTEiJ_T0091837.1 MGP_CASTEiJ_G0033537.1 mouse_genomes_project 9 33118326 33185698 - MGP_CASTEiJ_P0091837 Fam118b protein_coding protein_coding MGP_CASTEiJ_T0091838.1 MGP_CASTEiJ_G0033537.1 mouse_genomes_project 9 33118326 33185670 - MGP_CASTEiJ_P0091838 Fam118b protein_coding protein_coding MGP_CASTEiJ_T0091839.1 MGP_CASTEiJ_G0033537.1 mouse_genomes_project 9 33118541 33149864 - MGP_CASTEiJ_P0091839 Fam118b protein_coding protein_coding MGP_CASTEiJ_T0091840.1 MGP_CASTEiJ_G0033537.1 mouse_genomes_project 9 33125785 33185660 - MGP_CASTEiJ_P0091840 Fam118b protein_coding protein_coding MGP_CASTEiJ_T0091841.1 MGP_CASTEiJ_G0033537.1 mouse_genomes_project 9 33146474 33185673 - Fam118b protein_coding retained_intron MGP_CASTEiJ_T0091842.1 MGP_CASTEiJ_G0033537.1 mouse_genomes_project 9 33184213 33185673 - Fam118b protein_coding retained_intron MGP_CASTEiJ_T0092108.1 MGP_CASTEiJ_G0033679.1 mouse_genomes_project 9 39226150 39375957 - MGP_CASTEiJ_P0092108 Ubash3b protein_coding protein_coding MGP_CASTEiJ_T0092109.1 MGP_CASTEiJ_G0033679.1 mouse_genomes_project 9 39262557 39381540 - Ubash3b protein_coding processed_transcript MGP_CASTEiJ_T0092110.1 MGP_CASTEiJ_G0033679.1 mouse_genomes_project 9 39262585 39376033 - MGP_CASTEiJ_P0092110 Ubash3b protein_coding protein_coding MGP_CASTEiJ_T0092111.1 MGP_CASTEiJ_G0033679.1 mouse_genomes_project 9 39378380 39381717 - Ubash3b protein_coding processed_transcript MGP_CASTEiJ_T0092842.1 MGP_CASTEiJ_G0033909.1 mouse_genomes_project 9 59050207 59086827 + MGP_CASTEiJ_P0092842 Gramd2 protein_coding protein_coding MGP_CASTEiJ_T0092843.1 MGP_CASTEiJ_G0033909.1 mouse_genomes_project 9 59080494 59091408 + MGP_CASTEiJ_P0092843 Gramd2 protein_coding protein_coding MGP_CASTEiJ_T0092844.1 MGP_CASTEiJ_G0033909.1 mouse_genomes_project 9 59080621 59089329 + MGP_CASTEiJ_P0092844 Gramd2 protein_coding protein_coding MGP_CASTEiJ_T0092845.1 MGP_CASTEiJ_G0033909.1 mouse_genomes_project 9 59083014 59086745 + Gramd2 protein_coding retained_intron MGP_CASTEiJ_T0092846.1 MGP_CASTEiJ_G0033909.1 mouse_genomes_project 9 59084043 59089219 + MGP_CASTEiJ_P0092846 Gramd2 protein_coding protein_coding MGP_CASTEiJ_T0092847.1 MGP_CASTEiJ_G0033909.1 mouse_genomes_project 9 59087019 59091408 + Gramd2 protein_coding retained_intron MGP_CASTEiJ_T0092540.1 MGP_CASTEiJ_G0033815.1 mouse_genomes_project 9 52353915 52382746 + MGP_CASTEiJ_P0092540 4930550C14Rik protein_coding protein_coding MGP_CASTEiJ_T0015474.1 MGP_CASTEiJ_G0013637.1 mouse_genomes_project 9 77911278 77912479 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002354.1 MGP_CASTEiJ_G0002271.1 mouse_genomes_project 9 101353715 101356744 + TEC TEC MGP_CASTEiJ_T0010779.1 MGP_CASTEiJ_G0008967.1 mouse_genomes_project 9 106961149 106961237 + Mirlet7g miRNA miRNA MGP_CASTEiJ_T0092360.1 MGP_CASTEiJ_G0033756.1 mouse_genomes_project 9 44841744 44845029 + MGP_CASTEiJ_P0092360 Apoa5 protein_coding protein_coding MGP_CASTEiJ_T0092361.1 MGP_CASTEiJ_G0033756.1 mouse_genomes_project 9 44842189 44845029 + MGP_CASTEiJ_P0092361 Apoa5 protein_coding protein_coding MGP_CASTEiJ_T0095126.1 MGP_CASTEiJ_G0034348.1 mouse_genomes_project 9 111899533 111905214 + MGP_CASTEiJ_P0095126 Prss43 protein_coding protein_coding MGP_CASTEiJ_T0015422.1 MGP_CASTEiJ_G0013585.1 mouse_genomes_project 9 28835840 28836633 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093360.1 MGP_CASTEiJ_G0034026.1 mouse_genomes_project 9 73145907 73153994 - MGP_CASTEiJ_P0093360 Ccpg1os protein_coding protein_coding MGP_CASTEiJ_T0093361.1 MGP_CASTEiJ_G0034026.1 mouse_genomes_project 9 73152297 73154000 - Ccpg1os protein_coding retained_intron MGP_CASTEiJ_T0091693.1 MGP_CASTEiJ_G0033497.1 mouse_genomes_project 9 22147434 22148077 + MGP_CASTEiJ_P0091693 Cypt4 protein_coding protein_coding MGP_CASTEiJ_T0017791.1 MGP_CASTEiJ_G0015059.1 mouse_genomes_project 9 73213141 73217125 + 2310009A05Rik processed_transcript antisense MGP_CASTEiJ_T0017792.1 MGP_CASTEiJ_G0015059.1 mouse_genomes_project 9 73213153 73215811 + 2310009A05Rik processed_transcript retained_intron MGP_CASTEiJ_T0094097.1 MGP_CASTEiJ_G0034185.1 mouse_genomes_project 9 103269512 103295063 + MGP_CASTEiJ_P0094097 Gm5627 protein_coding protein_coding MGP_CASTEiJ_T0091761.1 MGP_CASTEiJ_G0033520.1 mouse_genomes_project 9 28830976 28877598 - MGP_CASTEiJ_P0091761 St14 protein_coding protein_coding MGP_CASTEiJ_T0091762.1 MGP_CASTEiJ_G0033520.1 mouse_genomes_project 9 28840871 28877541 - St14 protein_coding retained_intron MGP_CASTEiJ_T0091763.1 MGP_CASTEiJ_G0033520.1 mouse_genomes_project 9 28841461 28844361 - St14 protein_coding retained_intron MGP_CASTEiJ_T0091764.1 MGP_CASTEiJ_G0033520.1 mouse_genomes_project 9 28847570 28877541 - MGP_CASTEiJ_P0091764 St14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0002376.1 MGP_CASTEiJ_G0002293.1 mouse_genomes_project 9 105877335 105878741 + TEC TEC MGP_CASTEiJ_T0011403.1 MGP_CASTEiJ_G0009591.1 mouse_genomes_project 9 19067000 19067184 + Gm27373 misc_RNA misc_RNA MGP_CASTEiJ_T0092212.1 MGP_CASTEiJ_G0033713.1 mouse_genomes_project 9 42863736 42868548 + MGP_CASTEiJ_P0092212 Rps25 protein_coding protein_coding MGP_CASTEiJ_T0092213.1 MGP_CASTEiJ_G0033713.1 mouse_genomes_project 9 42863777 42868193 + MGP_CASTEiJ_P0092213 Rps25 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100142.1 MGP_CASTEiJ_G0037055.1 mouse_genomes_project 9 72349897 72350003 - Gm25163 snRNA snRNA MGP_CASTEiJ_T0101389.1 MGP_CASTEiJ_G0038302.1 mouse_genomes_project 9 68424017 68424090 + Gm22962 snoRNA snoRNA MGP_CASTEiJ_T0095543.1 MGP_CASTEiJ_G0034464.1 mouse_genomes_project 9 125196751 125198481 - MGP_CASTEiJ_P0095543 Tmem158 protein_coding protein_coding MGP_CASTEiJ_T0091597.1 MGP_CASTEiJ_G0033459.1 mouse_genomes_project 9 18903612 18925091 + MGP_CASTEiJ_P0091597 AB124611 protein_coding protein_coding MGP_CASTEiJ_T0091598.1 MGP_CASTEiJ_G0033459.1 mouse_genomes_project 9 18903637 18925084 + MGP_CASTEiJ_P0091598 AB124611 protein_coding protein_coding MGP_CASTEiJ_T0091599.1 MGP_CASTEiJ_G0033459.1 mouse_genomes_project 9 18903664 18925089 + MGP_CASTEiJ_P0091599 AB124611 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092141.1 MGP_CASTEiJ_G0033694.1 mouse_genomes_project 9 42503453 42534002 + MGP_CASTEiJ_P0092141 Usp2 protein_coding protein_coding MGP_CASTEiJ_T0092142.1 MGP_CASTEiJ_G0033694.1 mouse_genomes_project 9 42503510 42530372 + MGP_CASTEiJ_P0092142 Usp2 protein_coding protein_coding MGP_CASTEiJ_T0092143.1 MGP_CASTEiJ_G0033694.1 mouse_genomes_project 9 42505857 42532372 + MGP_CASTEiJ_P0092143 Usp2 protein_coding protein_coding MGP_CASTEiJ_T0092144.1 MGP_CASTEiJ_G0033694.1 mouse_genomes_project 9 42508602 42512328 + MGP_CASTEiJ_P0092144 Usp2 protein_coding protein_coding MGP_CASTEiJ_T0092145.1 MGP_CASTEiJ_G0033694.1 mouse_genomes_project 9 42521375 42530369 + MGP_CASTEiJ_P0092145 Usp2 protein_coding protein_coding MGP_CASTEiJ_T0092146.1 MGP_CASTEiJ_G0033694.1 mouse_genomes_project 9 42521376 42532856 + MGP_CASTEiJ_P0092146 Usp2 protein_coding protein_coding MGP_CASTEiJ_T0092147.1 MGP_CASTEiJ_G0033694.1 mouse_genomes_project 9 42523620 42528942 + MGP_CASTEiJ_P0092147 Usp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092148.1 MGP_CASTEiJ_G0033694.1 mouse_genomes_project 9 42528909 42532742 + Usp2 protein_coding processed_transcript MGP_CASTEiJ_T0092149.1 MGP_CASTEiJ_G0033694.1 mouse_genomes_project 9 42529115 42532333 + Usp2 protein_coding processed_transcript MGP_CASTEiJ_T0100157.1 MGP_CASTEiJ_G0037070.1 mouse_genomes_project 9 94810916 94811012 + Gm24178 snRNA snRNA MGP_CASTEiJ_T0100140.1 MGP_CASTEiJ_G0037053.1 mouse_genomes_project 9 70574828 70574936 + Gm22229 snRNA snRNA MGP_CASTEiJ_T0094632.1 MGP_CASTEiJ_G0034274.1 mouse_genomes_project 9 108896170 108951244 + Gm20662 protein_coding retained_intron MGP_CASTEiJ_T0094637.1 MGP_CASTEiJ_G0034274.1 mouse_genomes_project 9 108897810 108937496 + MGP_CASTEiJ_P0094637 Gm20662 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094638.1 MGP_CASTEiJ_G0034274.1 mouse_genomes_project 9 108897848 108937488 + MGP_CASTEiJ_P0094638 Gm20662 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091801.1 MGP_CASTEiJ_G0033531.1 mouse_genomes_project 9 32368417 32371694 + MGP_CASTEiJ_P0091801 Kirrel3 protein_coding protein_coding MGP_CASTEiJ_T0091802.1 MGP_CASTEiJ_G0033531.1 mouse_genomes_project 9 32368648 32394709 + Kirrel3 protein_coding processed_transcript MGP_CASTEiJ_T0091803.1 MGP_CASTEiJ_G0033531.1 mouse_genomes_project 9 32368649 32947616 + MGP_CASTEiJ_P0091803 Kirrel3 protein_coding protein_coding MGP_CASTEiJ_T0091804.1 MGP_CASTEiJ_G0033531.1 mouse_genomes_project 9 32371268 32949052 + MGP_CASTEiJ_P0091804 Kirrel3 protein_coding protein_coding MGP_CASTEiJ_T0091805.1 MGP_CASTEiJ_G0033531.1 mouse_genomes_project 9 32371330 32943228 + MGP_CASTEiJ_P0091805 Kirrel3 protein_coding protein_coding MGP_CASTEiJ_T0091806.1 MGP_CASTEiJ_G0033531.1 mouse_genomes_project 9 32371330 32949052 + MGP_CASTEiJ_P0091806 Kirrel3 protein_coding protein_coding MGP_CASTEiJ_T0091807.1 MGP_CASTEiJ_G0033531.1 mouse_genomes_project 9 32371363 32948646 + MGP_CASTEiJ_P0091807 Kirrel3 protein_coding protein_coding MGP_CASTEiJ_T0091808.1 MGP_CASTEiJ_G0033531.1 mouse_genomes_project 9 32371471 32948646 + MGP_CASTEiJ_P0091808 Kirrel3 protein_coding protein_coding MGP_CASTEiJ_T0091809.1 MGP_CASTEiJ_G0033531.1 mouse_genomes_project 9 32928610 32943226 + MGP_CASTEiJ_P0091809 Kirrel3 protein_coding protein_coding MGP_CASTEiJ_T0093607.1 MGP_CASTEiJ_G0034085.1 mouse_genomes_project 9 83972627 84009648 - MGP_CASTEiJ_P0093607 Lca5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093608.1 MGP_CASTEiJ_G0034085.1 mouse_genomes_project 9 83973698 84024659 - MGP_CASTEiJ_P0093608 Lca5 protein_coding protein_coding MGP_CASTEiJ_T0093609.1 MGP_CASTEiJ_G0034085.1 mouse_genomes_project 9 83975747 84024559 - MGP_CASTEiJ_P0093609 Lca5 protein_coding protein_coding MGP_CASTEiJ_T0093610.1 MGP_CASTEiJ_G0034085.1 mouse_genomes_project 9 83977430 84024511 - MGP_CASTEiJ_P0093610 Lca5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093611.1 MGP_CASTEiJ_G0034085.1 mouse_genomes_project 9 83983890 83985125 - Lca5 protein_coding retained_intron MGP_CASTEiJ_T0093612.1 MGP_CASTEiJ_G0034085.1 mouse_genomes_project 9 84004738 84024625 - Lca5 protein_coding retained_intron MGP_CASTEiJ_T0093613.1 MGP_CASTEiJ_G0034085.1 mouse_genomes_project 9 84005714 84018340 - MGP_CASTEiJ_P0093613 Lca5 protein_coding protein_coding MGP_CASTEiJ_T0093614.1 MGP_CASTEiJ_G0034085.1 mouse_genomes_project 9 84005919 84009656 - Lca5 protein_coding retained_intron MGP_CASTEiJ_T0093615.1 MGP_CASTEiJ_G0034085.1 mouse_genomes_project 9 84009435 84024648 - MGP_CASTEiJ_P0093615 Lca5 protein_coding protein_coding MGP_CASTEiJ_T0093616.1 MGP_CASTEiJ_G0034085.1 mouse_genomes_project 9 84009526 84024594 - Lca5 protein_coding processed_transcript MGP_CASTEiJ_T0008974.1 MGP_CASTEiJ_G0007225.1 mouse_genomes_project 9 17722196 17866730 + lincRNA lincRNA MGP_CASTEiJ_T0015460.1 MGP_CASTEiJ_G0013623.1 mouse_genomes_project 9 73849536 73849696 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091691.1 MGP_CASTEiJ_G0033496.1 mouse_genomes_project 9 22076536 22221247 - MGP_CASTEiJ_P0091691 Dpy19l2 protein_coding protein_coding MGP_CASTEiJ_T0091692.1 MGP_CASTEiJ_G0033496.1 mouse_genomes_project 9 22077523 22221201 - MGP_CASTEiJ_P0091692 Dpy19l2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095536.1 MGP_CASTEiJ_G0034461.1 mouse_genomes_project 9 125042688 125067084 + MGP_CASTEiJ_P0095536 Exosc7 protein_coding protein_coding MGP_CASTEiJ_T0095537.1 MGP_CASTEiJ_G0034461.1 mouse_genomes_project 9 125042731 125049199 + Exosc7 protein_coding retained_intron MGP_CASTEiJ_T0095538.1 MGP_CASTEiJ_G0034461.1 mouse_genomes_project 9 125057239 125061853 + Exosc7 protein_coding processed_transcript MGP_CASTEiJ_T0091384.1 MGP_CASTEiJ_G0033372.1 mouse_genomes_project 9 12348965 12369857 - MGP_CASTEiJ_P0091384 Med17 protein_coding protein_coding MGP_CASTEiJ_T0092257.1 MGP_CASTEiJ_G0033724.1 mouse_genomes_project 9 43290097 43295554 - Tmem25 protein_coding processed_transcript MGP_CASTEiJ_T0092258.1 MGP_CASTEiJ_G0033724.1 mouse_genomes_project 9 43290097 43295619 - MGP_CASTEiJ_P0092258 Tmem25 protein_coding protein_coding MGP_CASTEiJ_T0092259.1 MGP_CASTEiJ_G0033724.1 mouse_genomes_project 9 43290097 43295554 - MGP_CASTEiJ_P0092259 Tmem25 protein_coding protein_coding MGP_CASTEiJ_T0015535.1 MGP_CASTEiJ_G0013698.1 mouse_genomes_project 9 104992913 104993624 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092929.1 MGP_CASTEiJ_G0033925.1 mouse_genomes_project 9 61920563 62076968 - MGP_CASTEiJ_P0092929 Coro2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0092930.1 MGP_CASTEiJ_G0033925.1 mouse_genomes_project 9 61950721 62064697 - MGP_CASTEiJ_P0092930 Coro2b protein_coding protein_coding MGP_CASTEiJ_T0092931.1 MGP_CASTEiJ_G0033925.1 mouse_genomes_project 9 61956698 61960874 - MGP_CASTEiJ_P0092931 Coro2b protein_coding protein_coding MGP_CASTEiJ_T0092932.1 MGP_CASTEiJ_G0033925.1 mouse_genomes_project 9 61960808 62038331 - MGP_CASTEiJ_P0092932 Coro2b protein_coding protein_coding MGP_CASTEiJ_T0092933.1 MGP_CASTEiJ_G0033925.1 mouse_genomes_project 9 61961135 61962127 - Coro2b protein_coding retained_intron MGP_CASTEiJ_T0092934.1 MGP_CASTEiJ_G0033925.1 mouse_genomes_project 9 61962210 61975013 - MGP_CASTEiJ_P0092934 Coro2b protein_coding protein_coding MGP_CASTEiJ_T0092935.1 MGP_CASTEiJ_G0033925.1 mouse_genomes_project 9 61965851 62048087 - MGP_CASTEiJ_P0092935 Coro2b protein_coding protein_coding MGP_CASTEiJ_T0092936.1 MGP_CASTEiJ_G0033925.1 mouse_genomes_project 9 61978783 62064613 - Coro2b protein_coding retained_intron MGP_CASTEiJ_T0095049.1 MGP_CASTEiJ_G0034335.1 mouse_genomes_project 9 111373632 111413482 + MGP_CASTEiJ_P0095049 Scap protein_coding protein_coding MGP_CASTEiJ_T0095050.1 MGP_CASTEiJ_G0034335.1 mouse_genomes_project 9 111373640 111395038 + Scap protein_coding retained_intron MGP_CASTEiJ_T0095051.1 MGP_CASTEiJ_G0034335.1 mouse_genomes_project 9 111373700 111426079 + MGP_CASTEiJ_P0095051 Scap protein_coding protein_coding MGP_CASTEiJ_T0095052.1 MGP_CASTEiJ_G0034335.1 mouse_genomes_project 9 111373894 111394886 + MGP_CASTEiJ_P0095052 Scap protein_coding protein_coding MGP_CASTEiJ_T0095053.1 MGP_CASTEiJ_G0034335.1 mouse_genomes_project 9 111373980 111412716 + MGP_CASTEiJ_P0095053 Scap protein_coding protein_coding MGP_CASTEiJ_T0095054.1 MGP_CASTEiJ_G0034335.1 mouse_genomes_project 9 111385875 111394886 + MGP_CASTEiJ_P0095054 Scap protein_coding protein_coding MGP_CASTEiJ_T0095055.1 MGP_CASTEiJ_G0034335.1 mouse_genomes_project 9 111404002 111406345 + Scap protein_coding retained_intron MGP_CASTEiJ_T0095056.1 MGP_CASTEiJ_G0034335.1 mouse_genomes_project 9 111404435 111412685 + Scap protein_coding processed_transcript MGP_CASTEiJ_T0095057.1 MGP_CASTEiJ_G0034335.1 mouse_genomes_project 9 111414725 111417988 + Scap protein_coding retained_intron MGP_CASTEiJ_T0095058.1 MGP_CASTEiJ_G0034335.1 mouse_genomes_project 9 111419461 111419945 + Scap protein_coding retained_intron MGP_CASTEiJ_T0009040.1 MGP_CASTEiJ_G0007281.1 mouse_genomes_project 9 75629270 75640039 + 4933433G15Rik lincRNA lincRNA MGP_CASTEiJ_T0009041.1 MGP_CASTEiJ_G0007281.1 mouse_genomes_project 9 75629270 75637856 + 4933433G15Rik lincRNA lincRNA MGP_CASTEiJ_T0002387.1 MGP_CASTEiJ_G0002304.1 mouse_genomes_project 9 109791932 109792274 + TEC TEC MGP_CASTEiJ_T0092225.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43178877 43221715 - MGP_CASTEiJ_P0092225 Phldb1 protein_coding protein_coding MGP_CASTEiJ_T0092226.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43178881 43206995 - MGP_CASTEiJ_P0092226 Phldb1 protein_coding protein_coding MGP_CASTEiJ_T0092227.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43178881 43209301 - MGP_CASTEiJ_P0092227 Phldb1 protein_coding protein_coding MGP_CASTEiJ_T0092228.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43178881 43206970 - MGP_CASTEiJ_P0092228 Phldb1 protein_coding protein_coding MGP_CASTEiJ_T0092229.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43178881 43228502 - MGP_CASTEiJ_P0092229 Phldb1 protein_coding protein_coding MGP_CASTEiJ_T0092230.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43178881 43221694 - MGP_CASTEiJ_P0092230 Phldb1 protein_coding protein_coding MGP_CASTEiJ_T0092231.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43178883 43195408 - MGP_CASTEiJ_P0092231 Phldb1 protein_coding protein_coding MGP_CASTEiJ_T0092232.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43178883 43221715 - MGP_CASTEiJ_P0092232 Phldb1 protein_coding protein_coding MGP_CASTEiJ_T0092233.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43178883 43210058 - MGP_CASTEiJ_P0092233 Phldb1 protein_coding protein_coding MGP_CASTEiJ_T0092234.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43180201 43191523 - Phldb1 protein_coding retained_intron MGP_CASTEiJ_T0092235.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43188050 43190104 - Phldb1 protein_coding retained_intron MGP_CASTEiJ_T0092236.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43191411 43197782 - MGP_CASTEiJ_P0092236 Phldb1 protein_coding protein_coding MGP_CASTEiJ_T0092237.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43194639 43204681 - MGP_CASTEiJ_P0092237 Phldb1 protein_coding protein_coding MGP_CASTEiJ_T0092238.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43197245 43202145 - MGP_CASTEiJ_P0092238 Phldb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092239.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43209801 43215101 - MGP_CASTEiJ_P0092239 Phldb1 protein_coding protein_coding MGP_CASTEiJ_T0092240.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43209971 43215064 - MGP_CASTEiJ_P0092240 Phldb1 protein_coding protein_coding MGP_CASTEiJ_T0092241.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43212016 43220965 - Phldb1 protein_coding retained_intron MGP_CASTEiJ_T0092242.1 MGP_CASTEiJ_G0033721.1 mouse_genomes_project 9 43219625 43220101 - Phldb1 protein_coding processed_transcript MGP_CASTEiJ_T0008988.1 MGP_CASTEiJ_G0007239.1 mouse_genomes_project 9 31899848 31917651 + 7630403G23Rik lincRNA lincRNA MGP_CASTEiJ_T0092563.1 MGP_CASTEiJ_G0033821.1 mouse_genomes_project 9 52736253 52783938 + MGP_CASTEiJ_P0092563 Slc35f2 protein_coding protein_coding MGP_CASTEiJ_T0093032.1 MGP_CASTEiJ_G0033954.1 mouse_genomes_project 9 64859412 64911093 + MGP_CASTEiJ_P0093032 Igdcc3 protein_coding protein_coding MGP_CASTEiJ_T0093033.1 MGP_CASTEiJ_G0033954.1 mouse_genomes_project 9 64859673 64912267 + MGP_CASTEiJ_P0093033 Igdcc3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093642.1 MGP_CASTEiJ_G0034091.1 mouse_genomes_project 9 86387372 86453676 - MGP_CASTEiJ_P0093642 Ibtk protein_coding protein_coding MGP_CASTEiJ_T0093643.1 MGP_CASTEiJ_G0034091.1 mouse_genomes_project 9 86387554 86453676 - MGP_CASTEiJ_P0093643 Ibtk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093644.1 MGP_CASTEiJ_G0034091.1 mouse_genomes_project 9 86387568 86423640 - Ibtk protein_coding retained_intron MGP_CASTEiJ_T0093645.1 MGP_CASTEiJ_G0034091.1 mouse_genomes_project 9 86410865 86421189 - Ibtk protein_coding retained_intron MGP_CASTEiJ_T0093646.1 MGP_CASTEiJ_G0034091.1 mouse_genomes_project 9 86423005 86453656 - Ibtk protein_coding retained_intron MGP_CASTEiJ_T0093647.1 MGP_CASTEiJ_G0034091.1 mouse_genomes_project 9 86431114 86434249 - Ibtk protein_coding retained_intron MGP_CASTEiJ_T0015531.1 MGP_CASTEiJ_G0013694.1 mouse_genomes_project 9 103078048 103078248 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101365.1 MGP_CASTEiJ_G0038278.1 mouse_genomes_project 9 23165129 23165252 - Gm25346 snoRNA snoRNA MGP_CASTEiJ_T0009056.1 MGP_CASTEiJ_G0007294.1 mouse_genomes_project 9 89879974 89883183 + 1700017I07Rik lincRNA lincRNA MGP_CASTEiJ_T0094839.1 MGP_CASTEiJ_G0034304.1 mouse_genomes_project 9 109616210 109618447 + Slc25a20 protein_coding retained_intron MGP_CASTEiJ_T0094840.1 MGP_CASTEiJ_G0034304.1 mouse_genomes_project 9 109616220 109638290 + MGP_CASTEiJ_P0094840 Slc25a20 protein_coding protein_coding MGP_CASTEiJ_T0094841.1 MGP_CASTEiJ_G0034304.1 mouse_genomes_project 9 109626514 109634591 + Slc25a20 protein_coding retained_intron MGP_CASTEiJ_T0101392.1 MGP_CASTEiJ_G0038305.1 mouse_genomes_project 9 73978971 73979100 - Gm25105 snoRNA snoRNA MGP_CASTEiJ_T0098677.1 MGP_CASTEiJ_G0035608.1 mouse_genomes_project 9 87921297 87921431 + Gm24649 rRNA rRNA MGP_CASTEiJ_T0092409.1 MGP_CASTEiJ_G0033774.1 mouse_genomes_project 9 47863261 47869044 + Tmprss5 protein_coding retained_intron MGP_CASTEiJ_T0092410.1 MGP_CASTEiJ_G0033774.1 mouse_genomes_project 9 47863261 47879992 + MGP_CASTEiJ_P0092410 Tmprss5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092411.1 MGP_CASTEiJ_G0033774.1 mouse_genomes_project 9 47863354 47879400 + MGP_CASTEiJ_P0092411 Tmprss5 protein_coding protein_coding MGP_CASTEiJ_T0092412.1 MGP_CASTEiJ_G0033774.1 mouse_genomes_project 9 47863354 47880000 + MGP_CASTEiJ_P0092412 Tmprss5 protein_coding protein_coding MGP_CASTEiJ_T0092413.1 MGP_CASTEiJ_G0033774.1 mouse_genomes_project 9 47871403 47879992 + MGP_CASTEiJ_P0092413 Tmprss5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0015538.1 MGP_CASTEiJ_G0013701.1 mouse_genomes_project 9 107900360 107901564 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091611.1 MGP_CASTEiJ_G0033462.1 mouse_genomes_project 9 18973847 18977454 + MGP_CASTEiJ_P0091611 1810026J23Rik protein_coding protein_coding MGP_CASTEiJ_T0010730.1 MGP_CASTEiJ_G0008918.1 mouse_genomes_project 9 12411746 12411813 + miRNA miRNA MGP_CASTEiJ_T0091959.1 MGP_CASTEiJ_G0033576.1 mouse_genomes_project 9 35598628 35607806 - MGP_CASTEiJ_P0091959 Panx3 protein_coding protein_coding MGP_CASTEiJ_T0091960.1 MGP_CASTEiJ_G0033576.1 mouse_genomes_project 9 35602817 35607757 - MGP_CASTEiJ_P0091960 Panx3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091868.1 MGP_CASTEiJ_G0033548.1 mouse_genomes_project 9 33685495 33698879 - MGP_CASTEiJ_P0091868 Gm27235 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0002323.1 MGP_CASTEiJ_G0002241.1 mouse_genomes_project 9 86453419 86454771 + TEC TEC MGP_CASTEiJ_T0092909.1 MGP_CASTEiJ_G0033921.1 mouse_genomes_project 9 61441841 61520234 - Paqr5 protein_coding processed_transcript MGP_CASTEiJ_T0092910.1 MGP_CASTEiJ_G0033921.1 mouse_genomes_project 9 61442098 61520289 - MGP_CASTEiJ_P0092910 Paqr5 protein_coding protein_coding MGP_CASTEiJ_T0092911.1 MGP_CASTEiJ_G0033921.1 mouse_genomes_project 9 61444407 61466739 - MGP_CASTEiJ_P0092911 Paqr5 protein_coding protein_coding MGP_CASTEiJ_T0015495.1 MGP_CASTEiJ_G0013658.1 mouse_genomes_project 9 89830775 89831238 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002374.1 MGP_CASTEiJ_G0002291.1 mouse_genomes_project 9 104947610 104951821 - TEC TEC MGP_CASTEiJ_T0091526.1 MGP_CASTEiJ_G0033432.1 mouse_genomes_project 9 18196452 18202117 + MGP_CASTEiJ_P0091526 A230050P20Rik protein_coding protein_coding MGP_CASTEiJ_T0091527.1 MGP_CASTEiJ_G0033432.1 mouse_genomes_project 9 18196468 18202117 + A230050P20Rik protein_coding retained_intron MGP_CASTEiJ_T0091528.1 MGP_CASTEiJ_G0033432.1 mouse_genomes_project 9 18196490 18197919 + A230050P20Rik protein_coding processed_transcript MGP_CASTEiJ_T0091529.1 MGP_CASTEiJ_G0033432.1 mouse_genomes_project 9 18197100 18201585 + A230050P20Rik protein_coding retained_intron MGP_CASTEiJ_T0091530.1 MGP_CASTEiJ_G0033432.1 mouse_genomes_project 9 18198595 18200938 + A230050P20Rik protein_coding retained_intron MGP_CASTEiJ_T0101416.1 MGP_CASTEiJ_G0038329.1 mouse_genomes_project 9 113701607 113701740 + Gm24957 snoRNA snoRNA MGP_CASTEiJ_T0015451.1 MGP_CASTEiJ_G0013614.1 mouse_genomes_project 9 71906240 71906502 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093072.1 MGP_CASTEiJ_G0033970.1 mouse_genomes_project 9 65455234 65600441 - MGP_CASTEiJ_P0093072 Zfp609 protein_coding protein_coding MGP_CASTEiJ_T0093073.1 MGP_CASTEiJ_G0033970.1 mouse_genomes_project 9 65462703 65463983 - Zfp609 protein_coding processed_transcript MGP_CASTEiJ_T0093074.1 MGP_CASTEiJ_G0033970.1 mouse_genomes_project 9 65561224 65564105 - MGP_CASTEiJ_P0093074 Zfp609 protein_coding protein_coding MGP_CASTEiJ_T0091974.1 MGP_CASTEiJ_G0033589.1 mouse_genomes_project 9 36064286 36065231 + MGP_CASTEiJ_P0091974 Olfr888 protein_coding protein_coding MGP_CASTEiJ_T0092714.1 MGP_CASTEiJ_G0033871.1 mouse_genomes_project 9 56736974 56749542 + MGP_CASTEiJ_P0092714 Cox5a protein_coding protein_coding MGP_CASTEiJ_T0092727.1 MGP_CASTEiJ_G0033879.1 mouse_genomes_project 9 56917065 56923796 - MGP_CASTEiJ_P0092727 Cyp1a2 protein_coding protein_coding MGP_CASTEiJ_T0094961.1 MGP_CASTEiJ_G0034324.1 mouse_genomes_project 9 110343993 110346019 - protein_coding retained_intron MGP_CASTEiJ_T0002400.1 MGP_CASTEiJ_G0002317.1 mouse_genomes_project 9 121989125 121989759 + TEC TEC MGP_CASTEiJ_T0093227.1 MGP_CASTEiJ_G0034000.1 mouse_genomes_project 9 70030679 70037206 - MGP_CASTEiJ_P0093227 Gcnt3 protein_coding protein_coding MGP_CASTEiJ_T0092602.1 MGP_CASTEiJ_G0033838.1 mouse_genomes_project 9 53963917 53964665 - MGP_CASTEiJ_P0092602 AY074887 protein_coding protein_coding MGP_CASTEiJ_T0002375.1 MGP_CASTEiJ_G0002292.1 mouse_genomes_project 9 105786427 105789699 + TEC TEC MGP_CASTEiJ_T0092426.1 MGP_CASTEiJ_G0033781.1 mouse_genomes_project 9 49318750 49330620 + MGP_CASTEiJ_P0092426 Plet1 protein_coding protein_coding MGP_CASTEiJ_T0092427.1 MGP_CASTEiJ_G0033781.1 mouse_genomes_project 9 49318752 49327114 + MGP_CASTEiJ_P0092427 Plet1 protein_coding protein_coding MGP_CASTEiJ_T0009120.1 MGP_CASTEiJ_G0007343.1 mouse_genomes_project 9 124223058 124227882 - Gm26797 lincRNA lincRNA MGP_CASTEiJ_T0015514.1 MGP_CASTEiJ_G0013677.1 mouse_genomes_project 9 96510104 96510345 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091450.1 MGP_CASTEiJ_G0033399.1 mouse_genomes_project 9 16520509 16521451 + MGP_CASTEiJ_P0091450 Olfr845 protein_coding protein_coding MGP_CASTEiJ_T0005398.1 MGP_CASTEiJ_G0004563.1 mouse_genomes_project 9 108897937 108902229 - 4930535L15Rik antisense antisense MGP_CASTEiJ_T0092136.1 MGP_CASTEiJ_G0033690.1 mouse_genomes_project 9 41684125 41709483 + MGP_CASTEiJ_P0092136 Trim29 protein_coding protein_coding MGP_CASTEiJ_T0092137.1 MGP_CASTEiJ_G0033690.1 mouse_genomes_project 9 41684204 41810231 + MGP_CASTEiJ_P0092137 Trim29 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095448.1 MGP_CASTEiJ_G0034433.1 mouse_genomes_project 9 123535514 123568611 + MGP_CASTEiJ_P0095448 Vipr1 protein_coding protein_coding MGP_CASTEiJ_T0095449.1 MGP_CASTEiJ_G0034433.1 mouse_genomes_project 9 123535849 123554545 + Vipr1 protein_coding processed_transcript MGP_CASTEiJ_T0095450.1 MGP_CASTEiJ_G0034433.1 mouse_genomes_project 9 123560395 123561687 + Vipr1 protein_coding retained_intron MGP_CASTEiJ_T0095451.1 MGP_CASTEiJ_G0034433.1 mouse_genomes_project 9 123564492 123565292 + Vipr1 protein_coding retained_intron MGP_CASTEiJ_T0010727.1 MGP_CASTEiJ_G0008915.1 mouse_genomes_project 9 6901125 6901216 + Mir6237 miRNA miRNA MGP_CASTEiJ_T0011406.1 MGP_CASTEiJ_G0009594.1 mouse_genomes_project 9 53524222 53524440 + Gm25980 misc_RNA misc_RNA MGP_CASTEiJ_T0015453.1 MGP_CASTEiJ_G0013616.1 mouse_genomes_project 9 72035043 72035142 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0015550.1 MGP_CASTEiJ_G0013713.1 mouse_genomes_project 9 123124177 123124527 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091859.1 MGP_CASTEiJ_G0033543.1 mouse_genomes_project 9 33490126 33610767 + MGP_CASTEiJ_P0091859 Pate2 protein_coding protein_coding MGP_CASTEiJ_T0091860.1 MGP_CASTEiJ_G0033543.1 mouse_genomes_project 9 33493802 33568368 + Pate2 protein_coding processed_transcript MGP_CASTEiJ_T0091863.1 MGP_CASTEiJ_G0033543.1 mouse_genomes_project 9 33590188 33593446 + MGP_CASTEiJ_P0091863 Pate2 protein_coding protein_coding MGP_CASTEiJ_T0091864.1 MGP_CASTEiJ_G0033543.1 mouse_genomes_project 9 33590200 33591965 + Pate2 protein_coding retained_intron MGP_CASTEiJ_T0092963.1 MGP_CASTEiJ_G0033936.1 mouse_genomes_project 9 63247287 63362410 - MGP_CASTEiJ_P0092963 Smad3 protein_coding protein_coding MGP_CASTEiJ_T0092964.1 MGP_CASTEiJ_G0033936.1 mouse_genomes_project 9 63255327 63267128 - MGP_CASTEiJ_P0092964 Smad3 protein_coding protein_coding MGP_CASTEiJ_T0092965.1 MGP_CASTEiJ_G0033936.1 mouse_genomes_project 9 63255355 63316118 - MGP_CASTEiJ_P0092965 Smad3 protein_coding protein_coding MGP_CASTEiJ_T0092966.1 MGP_CASTEiJ_G0033936.1 mouse_genomes_project 9 63266728 63355504 - MGP_CASTEiJ_P0092966 Smad3 protein_coding protein_coding MGP_CASTEiJ_T0092967.1 MGP_CASTEiJ_G0033936.1 mouse_genomes_project 9 63268393 63347670 - Smad3 protein_coding processed_transcript MGP_CASTEiJ_T0009089.1 MGP_CASTEiJ_G0007320.1 mouse_genomes_project 9 104549452 104592023 - Gm29154 lincRNA lincRNA MGP_CASTEiJ_T0009090.1 MGP_CASTEiJ_G0007320.1 mouse_genomes_project 9 104549555 104591302 - Gm29154 lincRNA lincRNA MGP_CASTEiJ_T0010791.1 MGP_CASTEiJ_G0008979.1 mouse_genomes_project 9 112008190 112008267 + Gm24269 miRNA miRNA MGP_CASTEiJ_T0092971.1 MGP_CASTEiJ_G0033938.1 mouse_genomes_project 9 63752907 63773095 + MGP_CASTEiJ_P0092971 Lctl protein_coding protein_coding MGP_CASTEiJ_T0092972.1 MGP_CASTEiJ_G0033938.1 mouse_genomes_project 9 63752932 63753896 + Lctl protein_coding retained_intron MGP_CASTEiJ_T0092973.1 MGP_CASTEiJ_G0033938.1 mouse_genomes_project 9 63752989 63753772 + Lctl protein_coding processed_transcript MGP_CASTEiJ_T0092974.1 MGP_CASTEiJ_G0033938.1 mouse_genomes_project 9 63753019 63773091 + MGP_CASTEiJ_P0092974 Lctl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092975.1 MGP_CASTEiJ_G0033938.1 mouse_genomes_project 9 63757381 63773082 + MGP_CASTEiJ_P0092975 Lctl protein_coding protein_coding MGP_CASTEiJ_T0092976.1 MGP_CASTEiJ_G0033938.1 mouse_genomes_project 9 63757802 63761420 + Lctl protein_coding retained_intron MGP_CASTEiJ_T0095127.1 MGP_CASTEiJ_G0034349.1 mouse_genomes_project 9 111907919 111914584 + MGP_CASTEiJ_P0095127 Prss45 protein_coding protein_coding MGP_CASTEiJ_T0095128.1 MGP_CASTEiJ_G0034349.1 mouse_genomes_project 9 111907919 111914581 + MGP_CASTEiJ_P0095128 Prss45 protein_coding protein_coding MGP_CASTEiJ_T0092215.1 MGP_CASTEiJ_G0033715.1 mouse_genomes_project 9 42893871 42900541 - MGP_CASTEiJ_P0092215 Foxr1 protein_coding protein_coding MGP_CASTEiJ_T0093457.1 MGP_CASTEiJ_G0034051.1 mouse_genomes_project 9 76427328 76475879 - MGP_CASTEiJ_P0093457 Gfral protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093458.1 MGP_CASTEiJ_G0034051.1 mouse_genomes_project 9 76427328 76475879 - MGP_CASTEiJ_P0093458 Gfral protein_coding protein_coding MGP_CASTEiJ_T0091419.1 MGP_CASTEiJ_G0033382.1 mouse_genomes_project 9 15485209 15561313 - MGP_CASTEiJ_P0091419 Naalad2 protein_coding protein_coding MGP_CASTEiJ_T0091420.1 MGP_CASTEiJ_G0033382.1 mouse_genomes_project 9 15486298 15547835 - MGP_CASTEiJ_P0091420 Naalad2 protein_coding protein_coding MGP_CASTEiJ_T0091421.1 MGP_CASTEiJ_G0033382.1 mouse_genomes_project 9 15486299 15555420 - MGP_CASTEiJ_P0091421 Naalad2 protein_coding protein_coding MGP_CASTEiJ_T0091422.1 MGP_CASTEiJ_G0033382.1 mouse_genomes_project 9 15542462 15547721 - Naalad2 protein_coding retained_intron MGP_CASTEiJ_T0091423.1 MGP_CASTEiJ_G0033382.1 mouse_genomes_project 9 15546856 15566745 - MGP_CASTEiJ_P0091423 Naalad2 protein_coding protein_coding MGP_CASTEiJ_T0091424.1 MGP_CASTEiJ_G0033382.1 mouse_genomes_project 9 15547627 15566747 - MGP_CASTEiJ_P0091424 Naalad2 protein_coding protein_coding MGP_CASTEiJ_T0091425.1 MGP_CASTEiJ_G0033382.1 mouse_genomes_project 9 15550723 15566768 - MGP_CASTEiJ_P0091425 Naalad2 protein_coding protein_coding MGP_CASTEiJ_T0091426.1 MGP_CASTEiJ_G0033382.1 mouse_genomes_project 9 15550829 15566749 - Naalad2 protein_coding processed_transcript MGP_CASTEiJ_T0008977.1 MGP_CASTEiJ_G0007228.1 mouse_genomes_project 9 18766486 18772987 - Gm16853 lincRNA lincRNA MGP_CASTEiJ_T0095154.1 MGP_CASTEiJ_G0034358.1 mouse_genomes_project 9 112109615 112133759 + MGP_CASTEiJ_P0095154 Ltf protein_coding protein_coding MGP_CASTEiJ_T0095155.1 MGP_CASTEiJ_G0034358.1 mouse_genomes_project 9 112109636 112136021 + MGP_CASTEiJ_P0095155 Ltf protein_coding protein_coding MGP_CASTEiJ_T0095156.1 MGP_CASTEiJ_G0034358.1 mouse_genomes_project 9 112109636 112113965 + MGP_CASTEiJ_P0095156 Ltf protein_coding protein_coding MGP_CASTEiJ_T0095157.1 MGP_CASTEiJ_G0034358.1 mouse_genomes_project 9 112109636 112133759 + MGP_CASTEiJ_P0095157 Ltf protein_coding protein_coding MGP_CASTEiJ_T0095158.1 MGP_CASTEiJ_G0034358.1 mouse_genomes_project 9 112109654 112116506 + MGP_CASTEiJ_P0095158 Ltf protein_coding protein_coding MGP_CASTEiJ_T0095159.1 MGP_CASTEiJ_G0034358.1 mouse_genomes_project 9 112113917 112118915 + MGP_CASTEiJ_P0095159 Ltf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095160.1 MGP_CASTEiJ_G0034358.1 mouse_genomes_project 9 112115883 112117003 + Ltf protein_coding retained_intron MGP_CASTEiJ_T0095161.1 MGP_CASTEiJ_G0034358.1 mouse_genomes_project 9 112118615 112119986 + Ltf protein_coding retained_intron MGP_CASTEiJ_T0095162.1 MGP_CASTEiJ_G0034358.1 mouse_genomes_project 9 112118854 112129044 + MGP_CASTEiJ_P0095162 Ltf protein_coding protein_coding MGP_CASTEiJ_T0095163.1 MGP_CASTEiJ_G0034358.1 mouse_genomes_project 9 112123404 112133743 + MGP_CASTEiJ_P0095163 Ltf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095164.1 MGP_CASTEiJ_G0034358.1 mouse_genomes_project 9 112128874 112133743 + Ltf protein_coding retained_intron MGP_CASTEiJ_T0095165.1 MGP_CASTEiJ_G0034358.1 mouse_genomes_project 9 112132071 112135580 + MGP_CASTEiJ_P0095165 Ltf protein_coding protein_coding MGP_CASTEiJ_T0094506.1 MGP_CASTEiJ_G0034259.1 mouse_genomes_project 9 108476829 108500308 - MGP_CASTEiJ_P0094506 Gnai2 protein_coding protein_coding MGP_CASTEiJ_T0094507.1 MGP_CASTEiJ_G0034259.1 mouse_genomes_project 9 108476829 108500253 - MGP_CASTEiJ_P0094507 Gnai2 protein_coding protein_coding MGP_CASTEiJ_T0094508.1 MGP_CASTEiJ_G0034259.1 mouse_genomes_project 9 108477644 108478752 - Gnai2 protein_coding retained_intron MGP_CASTEiJ_T0094509.1 MGP_CASTEiJ_G0034259.1 mouse_genomes_project 9 108478360 108479217 - Gnai2 protein_coding retained_intron MGP_CASTEiJ_T0094510.1 MGP_CASTEiJ_G0034259.1 mouse_genomes_project 9 108478929 108480112 - Gnai2 protein_coding retained_intron MGP_CASTEiJ_T0094511.1 MGP_CASTEiJ_G0034259.1 mouse_genomes_project 9 108479205 108491514 - MGP_CASTEiJ_P0094511 Gnai2 protein_coding protein_coding MGP_CASTEiJ_T0094512.1 MGP_CASTEiJ_G0034259.1 mouse_genomes_project 9 108484232 108500275 - Gnai2 protein_coding retained_intron MGP_CASTEiJ_T0094513.1 MGP_CASTEiJ_G0034259.1 mouse_genomes_project 9 108484672 108485613 - Gnai2 protein_coding retained_intron MGP_CASTEiJ_T0094514.1 MGP_CASTEiJ_G0034259.1 mouse_genomes_project 9 108484794 108500278 - MGP_CASTEiJ_P0094514 Gnai2 protein_coding protein_coding MGP_CASTEiJ_T0094515.1 MGP_CASTEiJ_G0034259.1 mouse_genomes_project 9 108500040 108500284 - MGP_CASTEiJ_P0094515 Gnai2 protein_coding protein_coding MGP_CASTEiJ_T0091965.1 MGP_CASTEiJ_G0033581.1 mouse_genomes_project 9 35817278 35818214 + MGP_CASTEiJ_P0091965 Olfr877 protein_coding protein_coding MGP_CASTEiJ_T0009118.1 MGP_CASTEiJ_G0007341.1 mouse_genomes_project 9 121672240 121676086 - lincRNA lincRNA MGP_CASTEiJ_T0095500.1 MGP_CASTEiJ_G0034449.1 mouse_genomes_project 9 124263698 124291958 + MGP_CASTEiJ_P0095500 Abhd5 protein_coding protein_coding MGP_CASTEiJ_T0095501.1 MGP_CASTEiJ_G0034449.1 mouse_genomes_project 9 124263820 124291958 + MGP_CASTEiJ_P0095501 Abhd5 protein_coding protein_coding MGP_CASTEiJ_T0095502.1 MGP_CASTEiJ_G0034449.1 mouse_genomes_project 9 124263820 124290258 + MGP_CASTEiJ_P0095502 Abhd5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095503.1 MGP_CASTEiJ_G0034449.1 mouse_genomes_project 9 124263822 124288374 + MGP_CASTEiJ_P0095503 Abhd5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095504.1 MGP_CASTEiJ_G0034449.1 mouse_genomes_project 9 124274260 124278850 + MGP_CASTEiJ_P0095504 Abhd5 protein_coding protein_coding MGP_CASTEiJ_T0093515.1 MGP_CASTEiJ_G0034065.1 mouse_genomes_project 9 78657668 78657877 - MGP_CASTEiJ_P0093515 protein_coding protein_coding MGP_CASTEiJ_T0092655.1 MGP_CASTEiJ_G0033852.1 mouse_genomes_project 9 55220499 55247025 - MGP_CASTEiJ_P0092655 Tspan3 protein_coding protein_coding MGP_CASTEiJ_T0092656.1 MGP_CASTEiJ_G0033852.1 mouse_genomes_project 9 55228539 55246534 - MGP_CASTEiJ_P0092656 Tspan3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0015480.1 MGP_CASTEiJ_G0013643.1 mouse_genomes_project 9 82753667 82754419 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009037.1 MGP_CASTEiJ_G0007278.1 mouse_genomes_project 9 74762584 74763390 - Gm28622 lincRNA lincRNA MGP_CASTEiJ_T0095486.1 MGP_CASTEiJ_G0034443.1 mouse_genomes_project 9 123834351 123836301 - MGP_CASTEiJ_P0095486 Cyp8b1 protein_coding protein_coding MGP_CASTEiJ_T0095384.1 MGP_CASTEiJ_G0034411.1 mouse_genomes_project 9 121377829 121498366 - MGP_CASTEiJ_P0095384 Scn10a protein_coding protein_coding MGP_CASTEiJ_T0091448.1 MGP_CASTEiJ_G0033397.1 mouse_genomes_project 9 16438563 16439670 - MGP_CASTEiJ_P0091448 Olfr843 protein_coding protein_coding MGP_CASTEiJ_T0095520.1 MGP_CASTEiJ_G0034458.1 mouse_genomes_project 9 124946202 124948294 + MGP_CASTEiJ_P0095520 Tmem42 protein_coding protein_coding MGP_CASTEiJ_T0100153.1 MGP_CASTEiJ_G0037066.1 mouse_genomes_project 9 90405263 90405434 + Gm22717 snRNA snRNA MGP_CASTEiJ_T0093653.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87179431 87266521 + MGP_CASTEiJ_P0093653 Dopey1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093654.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87181588 87260100 + MGP_CASTEiJ_P0093654 Dopey1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093655.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87181620 87270513 + MGP_CASTEiJ_P0093655 Dopey1 protein_coding protein_coding MGP_CASTEiJ_T0093656.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87181636 87222919 + Dopey1 protein_coding retained_intron MGP_CASTEiJ_T0093657.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87181645 87217846 + Dopey1 protein_coding retained_intron MGP_CASTEiJ_T0093658.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87181677 87218969 + Dopey1 protein_coding retained_intron MGP_CASTEiJ_T0093659.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87181677 87227659 + MGP_CASTEiJ_P0093659 Dopey1 protein_coding protein_coding MGP_CASTEiJ_T0093660.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87181680 87270391 + MGP_CASTEiJ_P0093660 Dopey1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093661.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87200199 87270393 + MGP_CASTEiJ_P0093661 Dopey1 protein_coding protein_coding MGP_CASTEiJ_T0093662.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87202071 87204879 + Dopey1 protein_coding retained_intron MGP_CASTEiJ_T0093663.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87204407 87207331 + Dopey1 protein_coding retained_intron MGP_CASTEiJ_T0093664.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87211683 87215667 + Dopey1 protein_coding retained_intron MGP_CASTEiJ_T0093665.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87218315 87222195 + Dopey1 protein_coding retained_intron MGP_CASTEiJ_T0093666.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87218607 87231027 + Dopey1 protein_coding retained_intron MGP_CASTEiJ_T0093667.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87235747 87239568 + MGP_CASTEiJ_P0093667 Dopey1 protein_coding protein_coding MGP_CASTEiJ_T0093668.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87238095 87261160 + Dopey1 protein_coding retained_intron MGP_CASTEiJ_T0093669.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87244368 87269210 + Dopey1 protein_coding retained_intron MGP_CASTEiJ_T0093670.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87245780 87269215 + MGP_CASTEiJ_P0093670 Dopey1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093671.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87255248 87263759 + Dopey1 protein_coding retained_intron MGP_CASTEiJ_T0093672.1 MGP_CASTEiJ_G0034094.1 mouse_genomes_project 9 87264258 87269215 + Dopey1 protein_coding retained_intron MGP_CASTEiJ_T0092529.1 MGP_CASTEiJ_G0033809.1 mouse_genomes_project 9 50936058 50980022 + MGP_CASTEiJ_P0092529 Rdx protein_coding protein_coding MGP_CASTEiJ_T0092530.1 MGP_CASTEiJ_G0033809.1 mouse_genomes_project 9 50936849 50980022 + MGP_CASTEiJ_P0092530 Rdx protein_coding protein_coding MGP_CASTEiJ_T0092531.1 MGP_CASTEiJ_G0033809.1 mouse_genomes_project 9 50936849 50965130 + MGP_CASTEiJ_P0092531 Rdx protein_coding protein_coding MGP_CASTEiJ_T0095149.1 MGP_CASTEiJ_G0034356.1 mouse_genomes_project 9 112039945 112058134 + MGP_CASTEiJ_P0095149 Lrrc2 protein_coding protein_coding MGP_CASTEiJ_T0095150.1 MGP_CASTEiJ_G0034356.1 mouse_genomes_project 9 112039958 112065873 + MGP_CASTEiJ_P0095150 Lrrc2 protein_coding protein_coding MGP_CASTEiJ_T0095151.1 MGP_CASTEiJ_G0034356.1 mouse_genomes_project 9 112047482 112063729 + MGP_CASTEiJ_P0095151 Lrrc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091950.1 MGP_CASTEiJ_G0033572.1 mouse_genomes_project 9 35475392 35485263 - MGP_CASTEiJ_P0091950 Nrgn protein_coding protein_coding MGP_CASTEiJ_T0091951.1 MGP_CASTEiJ_G0033572.1 mouse_genomes_project 9 35475860 35477055 - Nrgn protein_coding processed_transcript MGP_CASTEiJ_T0091449.1 MGP_CASTEiJ_G0033398.1 mouse_genomes_project 9 16501158 16502088 + MGP_CASTEiJ_P0091449 protein_coding protein_coding MGP_CASTEiJ_T0101356.1 MGP_CASTEiJ_G0038269.1 mouse_genomes_project 9 12414121 12414195 + Gm24357 snoRNA snoRNA MGP_CASTEiJ_T0092566.1 MGP_CASTEiJ_G0033824.1 mouse_genomes_project 9 52882907 52948292 - MGP_CASTEiJ_P0092566 Elmod1 protein_coding protein_coding MGP_CASTEiJ_T0092567.1 MGP_CASTEiJ_G0033824.1 mouse_genomes_project 9 52882907 52911583 - MGP_CASTEiJ_P0092567 Elmod1 protein_coding protein_coding MGP_CASTEiJ_T0092112.1 MGP_CASTEiJ_G0033680.1 mouse_genomes_project 9 40265410 40438759 - MGP_CASTEiJ_P0092112 Sorl1 protein_coding protein_coding MGP_CASTEiJ_T0092113.1 MGP_CASTEiJ_G0033680.1 mouse_genomes_project 9 40270430 40273547 - Sorl1 protein_coding retained_intron MGP_CASTEiJ_T0092114.1 MGP_CASTEiJ_G0033680.1 mouse_genomes_project 9 40284656 40285983 - Sorl1 protein_coding processed_transcript MGP_CASTEiJ_T0000312.1 MGP_CASTEiJ_G0000261.1 mouse_genomes_project 9 125036803 125036872 + mt-Ta Mt_tRNA Mt_tRNA MGP_CASTEiJ_T0091326.1 MGP_CASTEiJ_G0033355.1 mouse_genomes_project 9 10801256 10821892 - MGP_CASTEiJ_P0091326 Cep57 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091327.1 MGP_CASTEiJ_G0033355.1 mouse_genomes_project 9 10801258 10822008 - MGP_CASTEiJ_P0091327 Cep57 protein_coding protein_coding MGP_CASTEiJ_T0091328.1 MGP_CASTEiJ_G0033355.1 mouse_genomes_project 9 10801259 10821953 - MGP_CASTEiJ_P0091328 Cep57 protein_coding protein_coding MGP_CASTEiJ_T0091329.1 MGP_CASTEiJ_G0033355.1 mouse_genomes_project 9 10801289 10821856 - MGP_CASTEiJ_P0091329 Cep57 protein_coding protein_coding MGP_CASTEiJ_T0091330.1 MGP_CASTEiJ_G0033355.1 mouse_genomes_project 9 10801648 10813406 - MGP_CASTEiJ_P0091330 Cep57 protein_coding protein_coding MGP_CASTEiJ_T0091331.1 MGP_CASTEiJ_G0033355.1 mouse_genomes_project 9 10802163 10821926 - MGP_CASTEiJ_P0091331 Cep57 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091332.1 MGP_CASTEiJ_G0033355.1 mouse_genomes_project 9 10802361 10804028 - Cep57 protein_coding retained_intron MGP_CASTEiJ_T0091333.1 MGP_CASTEiJ_G0033355.1 mouse_genomes_project 9 10802430 10813385 - MGP_CASTEiJ_P0091333 Cep57 protein_coding protein_coding MGP_CASTEiJ_T0091334.1 MGP_CASTEiJ_G0033355.1 mouse_genomes_project 9 10804333 10813629 - MGP_CASTEiJ_P0091334 Cep57 protein_coding protein_coding MGP_CASTEiJ_T0091335.1 MGP_CASTEiJ_G0033355.1 mouse_genomes_project 9 10806684 10813665 - Cep57 protein_coding retained_intron MGP_CASTEiJ_T0091336.1 MGP_CASTEiJ_G0033355.1 mouse_genomes_project 9 10807057 10821954 - MGP_CASTEiJ_P0091336 Cep57 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091337.1 MGP_CASTEiJ_G0033355.1 mouse_genomes_project 9 10807072 10810016 - Cep57 protein_coding retained_intron MGP_CASTEiJ_T0002341.1 MGP_CASTEiJ_G0002258.1 mouse_genomes_project 9 92672968 92677068 - TEC TEC MGP_CASTEiJ_T0091600.1 MGP_CASTEiJ_G0033460.1 mouse_genomes_project 9 18926677 18970590 + Carm1 protein_coding retained_intron MGP_CASTEiJ_T0091601.1 MGP_CASTEiJ_G0033460.1 mouse_genomes_project 9 18926677 18970590 + MGP_CASTEiJ_P0091601 Carm1 protein_coding protein_coding MGP_CASTEiJ_T0091602.1 MGP_CASTEiJ_G0033460.1 mouse_genomes_project 9 18944423 18969311 + MGP_CASTEiJ_P0091602 Carm1 protein_coding protein_coding MGP_CASTEiJ_T0091603.1 MGP_CASTEiJ_G0033460.1 mouse_genomes_project 9 18948859 18958918 + Carm1 protein_coding processed_transcript MGP_CASTEiJ_T0091604.1 MGP_CASTEiJ_G0033460.1 mouse_genomes_project 9 18948859 18970590 + MGP_CASTEiJ_P0091604 Carm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091605.1 MGP_CASTEiJ_G0033460.1 mouse_genomes_project 9 18954540 18959789 + Carm1 protein_coding processed_transcript MGP_CASTEiJ_T0091606.1 MGP_CASTEiJ_G0033460.1 mouse_genomes_project 9 18968340 18969323 + Carm1 protein_coding processed_transcript MGP_CASTEiJ_T0091607.1 MGP_CASTEiJ_G0033460.1 mouse_genomes_project 9 18968525 18969252 + Carm1 protein_coding processed_transcript MGP_CASTEiJ_T0015465.1 MGP_CASTEiJ_G0013628.1 mouse_genomes_project 9 75338398 75339618 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091228.1 MGP_CASTEiJ_G0033324.1 mouse_genomes_project 9 2308508 2330558 + MGP_CASTEiJ_P0091228 Casp12 protein_coding protein_coding MGP_CASTEiJ_T0091229.1 MGP_CASTEiJ_G0033324.1 mouse_genomes_project 9 2308554 2330408 + MGP_CASTEiJ_P0091229 Casp12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091230.1 MGP_CASTEiJ_G0033324.1 mouse_genomes_project 9 2308557 2316496 + Casp12 protein_coding retained_intron MGP_CASTEiJ_T0091231.1 MGP_CASTEiJ_G0033324.1 mouse_genomes_project 9 2308574 2317509 + Casp12 protein_coding retained_intron MGP_CASTEiJ_T0091232.1 MGP_CASTEiJ_G0033324.1 mouse_genomes_project 9 2308582 2321580 + MGP_CASTEiJ_P0091232 Casp12 protein_coding protein_coding MGP_CASTEiJ_T0092996.1 MGP_CASTEiJ_G0033943.1 mouse_genomes_project 9 63876703 63878991 + MGP_CASTEiJ_P0092996 Uchl4 protein_coding protein_coding MGP_CASTEiJ_T0101400.1 MGP_CASTEiJ_G0038313.1 mouse_genomes_project 9 88586572 88586704 - Gm25528 snoRNA snoRNA MGP_CASTEiJ_T0008975.1 MGP_CASTEiJ_G0007226.1 mouse_genomes_project 9 17913271 17918001 - Gm26521 lincRNA lincRNA MGP_CASTEiJ_T0094768.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109444559 109453470 + MGP_CASTEiJ_P0094768 Qars protein_coding protein_coding MGP_CASTEiJ_T0094769.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109444904 109448639 + Qars protein_coding retained_intron MGP_CASTEiJ_T0094770.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109444904 109449749 + Qars protein_coding retained_intron MGP_CASTEiJ_T0094771.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109444904 109448623 + Qars protein_coding retained_intron MGP_CASTEiJ_T0094772.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109444917 109453465 + MGP_CASTEiJ_P0094772 Qars protein_coding protein_coding MGP_CASTEiJ_T0094773.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109446325 109453465 + MGP_CASTEiJ_P0094773 Qars protein_coding protein_coding MGP_CASTEiJ_T0094774.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109449101 109450955 + Qars protein_coding retained_intron MGP_CASTEiJ_T0094775.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109449161 109450449 + Qars protein_coding retained_intron MGP_CASTEiJ_T0094776.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109450663 109451744 + Qars protein_coding retained_intron MGP_CASTEiJ_T0094777.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109450666 109452716 + MGP_CASTEiJ_P0094777 Qars protein_coding protein_coding MGP_CASTEiJ_T0094778.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109450687 109451521 + Qars protein_coding processed_transcript MGP_CASTEiJ_T0094779.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109451101 109451688 + Qars protein_coding retained_intron MGP_CASTEiJ_T0094780.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109451283 109451916 + Qars protein_coding retained_intron MGP_CASTEiJ_T0094781.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109451621 109453465 + MGP_CASTEiJ_P0094781 Qars protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094782.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109452305 109452753 + Qars protein_coding retained_intron MGP_CASTEiJ_T0094783.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109452308 109453458 + Qars protein_coding retained_intron MGP_CASTEiJ_T0094784.1 MGP_CASTEiJ_G0034296.1 mouse_genomes_project 9 109452376 109453465 + Qars protein_coding retained_intron MGP_CASTEiJ_T0091498.1 MGP_CASTEiJ_G0033426.1 mouse_genomes_project 9 17925096 17946325 - MGP_CASTEiJ_P0091498 Fbxl12 protein_coding protein_coding MGP_CASTEiJ_T0091499.1 MGP_CASTEiJ_G0033426.1 mouse_genomes_project 9 17925208 17948760 - Fbxl12 protein_coding processed_transcript MGP_CASTEiJ_T0091500.1 MGP_CASTEiJ_G0033426.1 mouse_genomes_project 9 17941789 17948772 - MGP_CASTEiJ_P0091500 Fbxl12 protein_coding protein_coding MGP_CASTEiJ_T0091501.1 MGP_CASTEiJ_G0033426.1 mouse_genomes_project 9 17941824 17946346 - MGP_CASTEiJ_P0091501 Fbxl12 protein_coding protein_coding MGP_CASTEiJ_T0091502.1 MGP_CASTEiJ_G0033426.1 mouse_genomes_project 9 17941826 17943382 - MGP_CASTEiJ_P0091502 Fbxl12 protein_coding protein_coding MGP_CASTEiJ_T0091503.1 MGP_CASTEiJ_G0033426.1 mouse_genomes_project 9 17941826 17948760 - MGP_CASTEiJ_P0091503 Fbxl12 protein_coding protein_coding MGP_CASTEiJ_T0091504.1 MGP_CASTEiJ_G0033426.1 mouse_genomes_project 9 17941827 17948772 - MGP_CASTEiJ_P0091504 Fbxl12 protein_coding protein_coding MGP_CASTEiJ_T0091505.1 MGP_CASTEiJ_G0033426.1 mouse_genomes_project 9 17941829 17948784 - MGP_CASTEiJ_P0091505 Fbxl12 protein_coding protein_coding MGP_CASTEiJ_T0091506.1 MGP_CASTEiJ_G0033426.1 mouse_genomes_project 9 17941829 17946818 - MGP_CASTEiJ_P0091506 Fbxl12 protein_coding protein_coding MGP_CASTEiJ_T0091507.1 MGP_CASTEiJ_G0033426.1 mouse_genomes_project 9 17945574 17948755 - Fbxl12 protein_coding retained_intron MGP_CASTEiJ_T0093633.1 MGP_CASTEiJ_G0034089.1 mouse_genomes_project 9 84542142 84741021 + MGP_CASTEiJ_P0093633 Bckdhb protein_coding protein_coding MGP_CASTEiJ_T0093634.1 MGP_CASTEiJ_G0034089.1 mouse_genomes_project 9 84542147 84741021 + MGP_CASTEiJ_P0093634 Bckdhb protein_coding protein_coding MGP_CASTEiJ_T0093635.1 MGP_CASTEiJ_G0034089.1 mouse_genomes_project 9 84560080 84741022 + MGP_CASTEiJ_P0093635 Bckdhb protein_coding protein_coding MGP_CASTEiJ_T0093636.1 MGP_CASTEiJ_G0034089.1 mouse_genomes_project 9 84647467 84740980 + Bckdhb protein_coding processed_transcript MGP_CASTEiJ_T0093637.1 MGP_CASTEiJ_G0034089.1 mouse_genomes_project 9 84657092 84741021 + Bckdhb protein_coding processed_transcript MGP_CASTEiJ_T0093638.1 MGP_CASTEiJ_G0034089.1 mouse_genomes_project 9 84722327 84741022 + Bckdhb protein_coding processed_transcript MGP_CASTEiJ_T0100115.1 MGP_CASTEiJ_G0037028.1 mouse_genomes_project 9 33383564 33383726 + Gm25630 snRNA snRNA MGP_CASTEiJ_T0091967.1 MGP_CASTEiJ_G0033583.1 mouse_genomes_project 9 35877825 35878890 + MGP_CASTEiJ_P0091967 Olfr878 protein_coding protein_coding MGP_CASTEiJ_T0092406.1 MGP_CASTEiJ_G0033772.1 mouse_genomes_project 9 47741380 47798315 + MGP_CASTEiJ_P0092406 Usp28 protein_coding protein_coding MGP_CASTEiJ_T0092407.1 MGP_CASTEiJ_G0033772.1 mouse_genomes_project 9 47741476 47797346 + MGP_CASTEiJ_P0092407 Usp28 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095251.1 MGP_CASTEiJ_G0034371.1 mouse_genomes_project 9 115217510 115265707 + MGP_CASTEiJ_P0095251 Ubp1 protein_coding protein_coding MGP_CASTEiJ_T0095252.1 MGP_CASTEiJ_G0034371.1 mouse_genomes_project 9 115217510 115265707 + MGP_CASTEiJ_P0095252 Ubp1 protein_coding protein_coding MGP_CASTEiJ_T0095253.1 MGP_CASTEiJ_G0034371.1 mouse_genomes_project 9 115218930 115265325 + MGP_CASTEiJ_P0095253 Ubp1 protein_coding protein_coding MGP_CASTEiJ_T0095588.1 MGP_CASTEiJ_G0034482.1 mouse_genomes_project 9 126314923 126338764 - MGP_CASTEiJ_P0095588 2010315B03Rik protein_coding protein_coding MGP_CASTEiJ_T0095589.1 MGP_CASTEiJ_G0034482.1 mouse_genomes_project 9 126316760 126338710 - MGP_CASTEiJ_P0095589 2010315B03Rik protein_coding protein_coding MGP_CASTEiJ_T0095590.1 MGP_CASTEiJ_G0034482.1 mouse_genomes_project 9 126316950 126337967 - MGP_CASTEiJ_P0095590 2010315B03Rik protein_coding protein_coding MGP_CASTEiJ_T0095591.1 MGP_CASTEiJ_G0034482.1 mouse_genomes_project 9 126316962 126338739 - MGP_CASTEiJ_P0095591 2010315B03Rik protein_coding protein_coding MGP_CASTEiJ_T0095592.1 MGP_CASTEiJ_G0034482.1 mouse_genomes_project 9 126323839 126338739 - 2010315B03Rik protein_coding processed_transcript MGP_CASTEiJ_T0010761.1 MGP_CASTEiJ_G0008949.1 mouse_genomes_project 9 63865766 63865893 + Gm24106 miRNA miRNA MGP_CASTEiJ_T0015527.1 MGP_CASTEiJ_G0013690.1 mouse_genomes_project 9 101777796 101778128 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095246.1 MGP_CASTEiJ_G0034369.1 mouse_genomes_project 9 115003448 115055347 + MGP_CASTEiJ_P0095246 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0093704.1 MGP_CASTEiJ_G0034102.1 mouse_genomes_project 9 87871076 87905157 + MGP_CASTEiJ_P0093704 Mrap2 protein_coding protein_coding MGP_CASTEiJ_T0093705.1 MGP_CASTEiJ_G0034102.1 mouse_genomes_project 9 87871076 87905157 + MGP_CASTEiJ_P0093705 Mrap2 protein_coding protein_coding MGP_CASTEiJ_T0093706.1 MGP_CASTEiJ_G0034102.1 mouse_genomes_project 9 87871113 87905157 + MGP_CASTEiJ_P0093706 Mrap2 protein_coding protein_coding MGP_CASTEiJ_T0095487.1 MGP_CASTEiJ_G0034444.1 mouse_genomes_project 9 123856923 123866685 + MGP_CASTEiJ_P0095487 1700048O20Rik protein_coding protein_coding MGP_CASTEiJ_T0005295.1 MGP_CASTEiJ_G0004495.1 mouse_genomes_project 9 44403995 44405585 - Gm16536 antisense antisense MGP_CASTEiJ_T0092515.1 MGP_CASTEiJ_G0033801.1 mouse_genomes_project 9 49920070 49942803 - MGP_CASTEiJ_P0092515 4833427G06Rik protein_coding protein_coding MGP_CASTEiJ_T0095073.1 MGP_CASTEiJ_G0034339.1 mouse_genomes_project 9 111522745 111535853 + MGP_CASTEiJ_P0095073 Kif9 protein_coding protein_coding MGP_CASTEiJ_T0095074.1 MGP_CASTEiJ_G0034339.1 mouse_genomes_project 9 111522781 111580760 + MGP_CASTEiJ_P0095074 Kif9 protein_coding protein_coding MGP_CASTEiJ_T0095075.1 MGP_CASTEiJ_G0034339.1 mouse_genomes_project 9 111522781 111580901 + MGP_CASTEiJ_P0095075 Kif9 protein_coding protein_coding MGP_CASTEiJ_T0095076.1 MGP_CASTEiJ_G0034339.1 mouse_genomes_project 9 111522781 111577852 + MGP_CASTEiJ_P0095076 Kif9 protein_coding protein_coding MGP_CASTEiJ_T0095077.1 MGP_CASTEiJ_G0034339.1 mouse_genomes_project 9 111523992 111579558 + MGP_CASTEiJ_P0095077 Kif9 protein_coding protein_coding MGP_CASTEiJ_T0094482.1 MGP_CASTEiJ_G0034256.1 mouse_genomes_project 9 108441731 108449513 + MGP_CASTEiJ_P0094482 Hyal3 protein_coding protein_coding MGP_CASTEiJ_T0094483.1 MGP_CASTEiJ_G0034256.1 mouse_genomes_project 9 108447342 108450034 + MGP_CASTEiJ_P0094483 Hyal3 protein_coding protein_coding MGP_CASTEiJ_T0094484.1 MGP_CASTEiJ_G0034256.1 mouse_genomes_project 9 108447418 108449342 + MGP_CASTEiJ_P0094484 Hyal3 protein_coding protein_coding MGP_CASTEiJ_T0095131.1 MGP_CASTEiJ_G0034351.1 mouse_genomes_project 9 111929427 111935903 + MGP_CASTEiJ_P0095131 Prss50 protein_coding protein_coding MGP_CASTEiJ_T0095132.1 MGP_CASTEiJ_G0034351.1 mouse_genomes_project 9 111932619 111935902 + MGP_CASTEiJ_P0095132 Prss50 protein_coding protein_coding MGP_CASTEiJ_T0091694.1 MGP_CASTEiJ_G0033498.1 mouse_genomes_project 9 22247033 22303483 - MGP_CASTEiJ_P0091694 Tbx20 protein_coding protein_coding MGP_CASTEiJ_T0091695.1 MGP_CASTEiJ_G0033498.1 mouse_genomes_project 9 22266935 22303483 - MGP_CASTEiJ_P0091695 Tbx20 protein_coding protein_coding MGP_CASTEiJ_T0093724.1 MGP_CASTEiJ_G0034107.1 mouse_genomes_project 9 89108971 89162119 - MGP_CASTEiJ_P0093724 Gm20537 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093726.1 MGP_CASTEiJ_G0034107.1 mouse_genomes_project 9 89124311 89162004 - MGP_CASTEiJ_P0093726 Gm20537 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095499.1 MGP_CASTEiJ_G0034448.1 mouse_genomes_project 9 124099411 124215510 - MGP_CASTEiJ_P0095499 Ano10 protein_coding protein_coding MGP_CASTEiJ_T0015491.1 MGP_CASTEiJ_G0013654.1 mouse_genomes_project 9 88737265 88737871 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093035.1 MGP_CASTEiJ_G0033956.1 mouse_genomes_project 9 64999113 65016005 + MGP_CASTEiJ_P0093035 protein_coding protein_coding MGP_CASTEiJ_T0093036.1 MGP_CASTEiJ_G0033956.1 mouse_genomes_project 9 64999757 65015935 + MGP_CASTEiJ_P0093036 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094084.1 MGP_CASTEiJ_G0034184.1 mouse_genomes_project 9 103246530 103250582 + MGP_CASTEiJ_P0094084 Amotl2 protein_coding protein_coding MGP_CASTEiJ_T0094085.1 MGP_CASTEiJ_G0034184.1 mouse_genomes_project 9 103246660 103263276 + MGP_CASTEiJ_P0094085 Amotl2 protein_coding protein_coding MGP_CASTEiJ_T0094086.1 MGP_CASTEiJ_G0034184.1 mouse_genomes_project 9 103247147 103250594 + MGP_CASTEiJ_P0094086 Amotl2 protein_coding protein_coding MGP_CASTEiJ_T0094087.1 MGP_CASTEiJ_G0034184.1 mouse_genomes_project 9 103247526 103263281 + MGP_CASTEiJ_P0094087 Amotl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094088.1 MGP_CASTEiJ_G0034184.1 mouse_genomes_project 9 103247533 103263284 + MGP_CASTEiJ_P0094088 Amotl2 protein_coding protein_coding MGP_CASTEiJ_T0094089.1 MGP_CASTEiJ_G0034184.1 mouse_genomes_project 9 103248287 103250253 + MGP_CASTEiJ_P0094089 Amotl2 protein_coding protein_coding MGP_CASTEiJ_T0094090.1 MGP_CASTEiJ_G0034184.1 mouse_genomes_project 9 103248328 103250261 + MGP_CASTEiJ_P0094090 Amotl2 protein_coding protein_coding MGP_CASTEiJ_T0094091.1 MGP_CASTEiJ_G0034184.1 mouse_genomes_project 9 103248343 103250073 + MGP_CASTEiJ_P0094091 Amotl2 protein_coding protein_coding MGP_CASTEiJ_T0094092.1 MGP_CASTEiJ_G0034184.1 mouse_genomes_project 9 103248426 103258366 + MGP_CASTEiJ_P0094092 Amotl2 protein_coding protein_coding MGP_CASTEiJ_T0094093.1 MGP_CASTEiJ_G0034184.1 mouse_genomes_project 9 103252180 103258189 + Amotl2 protein_coding processed_transcript MGP_CASTEiJ_T0094094.1 MGP_CASTEiJ_G0034184.1 mouse_genomes_project 9 103252398 103263281 + Amotl2 protein_coding retained_intron MGP_CASTEiJ_T0094095.1 MGP_CASTEiJ_G0034184.1 mouse_genomes_project 9 103258193 103262204 + Amotl2 protein_coding processed_transcript MGP_CASTEiJ_T0094096.1 MGP_CASTEiJ_G0034184.1 mouse_genomes_project 9 103260593 103262190 + Amotl2 protein_coding retained_intron MGP_CASTEiJ_T0092052.1 MGP_CASTEiJ_G0033655.1 mouse_genomes_project 9 38078907 38079816 + MGP_CASTEiJ_P0092052 Olfr229 protein_coding protein_coding MGP_CASTEiJ_T0010778.1 MGP_CASTEiJ_G0008966.1 mouse_genomes_project 9 106931240 106931330 + Mir135a-1 miRNA miRNA MGP_CASTEiJ_T0094017.1 MGP_CASTEiJ_G0034170.1 mouse_genomes_project 9 100297585 100299646 - MGP_CASTEiJ_P0094017 Sox14 protein_coding protein_coding MGP_CASTEiJ_T0094018.1 MGP_CASTEiJ_G0034170.1 mouse_genomes_project 9 100297699 100299132 - MGP_CASTEiJ_P0094018 Sox14 protein_coding protein_coding MGP_CASTEiJ_T0005313.1 MGP_CASTEiJ_G0004505.1 mouse_genomes_project 9 57019987 57077845 + antisense antisense MGP_CASTEiJ_T0005314.1 MGP_CASTEiJ_G0004505.1 mouse_genomes_project 9 57069779 57078179 + antisense antisense MGP_CASTEiJ_T0005315.1 MGP_CASTEiJ_G0004505.1 mouse_genomes_project 9 57071239 57078084 + antisense antisense MGP_CASTEiJ_T0091472.1 MGP_CASTEiJ_G0033421.1 mouse_genomes_project 9 17652530 17682365 - MGP_CASTEiJ_P0091472 Zfp560 protein_coding protein_coding MGP_CASTEiJ_T0091473.1 MGP_CASTEiJ_G0033421.1 mouse_genomes_project 9 17661349 17682365 - Zfp560 protein_coding retained_intron MGP_CASTEiJ_T0002293.1 MGP_CASTEiJ_G0002211.1 mouse_genomes_project 9 72025676 72027671 - TEC TEC MGP_CASTEiJ_T0005395.1 MGP_CASTEiJ_G0004560.1 mouse_genomes_project 9 108650867 108651641 + Gm37850 antisense antisense MGP_CASTEiJ_T0094063.1 MGP_CASTEiJ_G0034178.1 mouse_genomes_project 9 101938357 101941240 - MGP_CASTEiJ_P0094063 Gm5145 protein_coding protein_coding MGP_CASTEiJ_T0098684.1 MGP_CASTEiJ_G0035615.1 mouse_genomes_project 9 117079353 117079472 - n-R5s92 rRNA rRNA MGP_CASTEiJ_T0002389.1 MGP_CASTEiJ_G0002306.1 mouse_genomes_project 9 110320356 110503281 + TEC TEC MGP_CASTEiJ_T0094243.1 MGP_CASTEiJ_G0034211.1 mouse_genomes_project 9 106391389 106429961 + Pik3r4 protein_coding retained_intron MGP_CASTEiJ_T0094244.1 MGP_CASTEiJ_G0034211.1 mouse_genomes_project 9 106391392 106393173 + MGP_CASTEiJ_P0094244 Pik3r4 protein_coding protein_coding MGP_CASTEiJ_T0094245.1 MGP_CASTEiJ_G0034211.1 mouse_genomes_project 9 106391419 106404051 + Pik3r4 protein_coding retained_intron MGP_CASTEiJ_T0094246.1 MGP_CASTEiJ_G0034211.1 mouse_genomes_project 9 106391426 106414509 + Pik3r4 protein_coding retained_intron MGP_CASTEiJ_T0094247.1 MGP_CASTEiJ_G0034211.1 mouse_genomes_project 9 106391441 106438175 + MGP_CASTEiJ_P0094247 Pik3r4 protein_coding protein_coding MGP_CASTEiJ_T0094248.1 MGP_CASTEiJ_G0034211.1 mouse_genomes_project 9 106391581 106438301 + MGP_CASTEiJ_P0094248 Pik3r4 protein_coding protein_coding MGP_CASTEiJ_T0094249.1 MGP_CASTEiJ_G0034211.1 mouse_genomes_project 9 106391612 106397389 + MGP_CASTEiJ_P0094249 Pik3r4 protein_coding protein_coding MGP_CASTEiJ_T0094250.1 MGP_CASTEiJ_G0034211.1 mouse_genomes_project 9 106408559 106419765 + MGP_CASTEiJ_P0094250 Pik3r4 protein_coding protein_coding MGP_CASTEiJ_T0094251.1 MGP_CASTEiJ_G0034211.1 mouse_genomes_project 9 106411860 106414056 + Pik3r4 protein_coding retained_intron MGP_CASTEiJ_T0094252.1 MGP_CASTEiJ_G0034211.1 mouse_genomes_project 9 106432353 106437038 + Pik3r4 protein_coding retained_intron MGP_CASTEiJ_T0095513.1 MGP_CASTEiJ_G0034453.1 mouse_genomes_project 9 124760000 124769852 - MGP_CASTEiJ_P0095513 Zfp445 protein_coding protein_coding MGP_CASTEiJ_T0009057.1 MGP_CASTEiJ_G0007295.1 mouse_genomes_project 9 89902867 89944525 + 4930524O08Rik lincRNA lincRNA MGP_CASTEiJ_T0009058.1 MGP_CASTEiJ_G0007295.1 mouse_genomes_project 9 89903292 89918100 + 4930524O08Rik lincRNA lincRNA MGP_CASTEiJ_T0009059.1 MGP_CASTEiJ_G0007295.1 mouse_genomes_project 9 89903330 89917442 + 4930524O08Rik lincRNA lincRNA MGP_CASTEiJ_T0094470.1 MGP_CASTEiJ_G0034254.1 mouse_genomes_project 9 108437843 108442623 + MGP_CASTEiJ_P0094470 Hyal1 protein_coding protein_coding MGP_CASTEiJ_T0094471.1 MGP_CASTEiJ_G0034254.1 mouse_genomes_project 9 108437854 108440476 + MGP_CASTEiJ_P0094471 Hyal1 protein_coding protein_coding MGP_CASTEiJ_T0094472.1 MGP_CASTEiJ_G0034254.1 mouse_genomes_project 9 108437874 108441892 + MGP_CASTEiJ_P0094472 Hyal1 protein_coding protein_coding MGP_CASTEiJ_T0094473.1 MGP_CASTEiJ_G0034254.1 mouse_genomes_project 9 108437906 108440332 + MGP_CASTEiJ_P0094473 Hyal1 protein_coding protein_coding MGP_CASTEiJ_T0094480.1 MGP_CASTEiJ_G0034254.1 mouse_genomes_project 9 108440510 108442586 + Hyal1 protein_coding retained_intron MGP_CASTEiJ_T0091696.1 MGP_CASTEiJ_G0033499.1 mouse_genomes_project 9 22663131 22710791 - MGP_CASTEiJ_P0091696 Herpud2 protein_coding protein_coding MGP_CASTEiJ_T0010793.1 MGP_CASTEiJ_G0008981.1 mouse_genomes_project 9 116817508 116817629 + Mir467h miRNA miRNA MGP_CASTEiJ_T0093862.1 MGP_CASTEiJ_G0034136.1 mouse_genomes_project 9 96171783 96279956 + MGP_CASTEiJ_P0093862 Xrn1 protein_coding protein_coding MGP_CASTEiJ_T0093863.1 MGP_CASTEiJ_G0034136.1 mouse_genomes_project 9 96171790 96284762 + MGP_CASTEiJ_P0093863 Xrn1 protein_coding protein_coding MGP_CASTEiJ_T0093864.1 MGP_CASTEiJ_G0034136.1 mouse_genomes_project 9 96171816 96185272 + MGP_CASTEiJ_P0093864 Xrn1 protein_coding protein_coding MGP_CASTEiJ_T0093865.1 MGP_CASTEiJ_G0034136.1 mouse_genomes_project 9 96171855 96222699 + Xrn1 protein_coding retained_intron MGP_CASTEiJ_T0093866.1 MGP_CASTEiJ_G0034136.1 mouse_genomes_project 9 96171882 96279956 + Xrn1 protein_coding retained_intron MGP_CASTEiJ_T0093867.1 MGP_CASTEiJ_G0034136.1 mouse_genomes_project 9 96171885 96235855 + MGP_CASTEiJ_P0093867 Xrn1 protein_coding protein_coding MGP_CASTEiJ_T0093868.1 MGP_CASTEiJ_G0034136.1 mouse_genomes_project 9 96192693 96196255 + Xrn1 protein_coding retained_intron MGP_CASTEiJ_T0093869.1 MGP_CASTEiJ_G0034136.1 mouse_genomes_project 9 96194429 96198863 + Xrn1 protein_coding retained_intron MGP_CASTEiJ_T0093870.1 MGP_CASTEiJ_G0034136.1 mouse_genomes_project 9 96241395 96245530 + Xrn1 protein_coding retained_intron MGP_CASTEiJ_T0005374.1 MGP_CASTEiJ_G0004546.1 mouse_genomes_project 9 106066234 106075476 + antisense antisense MGP_CASTEiJ_T0092750.1 MGP_CASTEiJ_G0033887.1 mouse_genomes_project 9 57288413 57384367 - MGP_CASTEiJ_P0092750 Ccdc33 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092751.1 MGP_CASTEiJ_G0033887.1 mouse_genomes_project 9 57288420 57366686 - MGP_CASTEiJ_P0092751 Ccdc33 protein_coding protein_coding MGP_CASTEiJ_T0092752.1 MGP_CASTEiJ_G0033887.1 mouse_genomes_project 9 57288421 57384446 - MGP_CASTEiJ_P0092752 Ccdc33 protein_coding protein_coding MGP_CASTEiJ_T0092753.1 MGP_CASTEiJ_G0033887.1 mouse_genomes_project 9 57288425 57366614 - MGP_CASTEiJ_P0092753 Ccdc33 protein_coding protein_coding MGP_CASTEiJ_T0092754.1 MGP_CASTEiJ_G0033887.1 mouse_genomes_project 9 57288462 57290720 - Ccdc33 protein_coding retained_intron MGP_CASTEiJ_T0092755.1 MGP_CASTEiJ_G0033887.1 mouse_genomes_project 9 57292990 57303270 - Ccdc33 protein_coding processed_transcript MGP_CASTEiJ_T0092757.1 MGP_CASTEiJ_G0033887.1 mouse_genomes_project 9 57330532 57379986 - Ccdc33 protein_coding processed_transcript MGP_CASTEiJ_T0092758.1 MGP_CASTEiJ_G0033887.1 mouse_genomes_project 9 57340041 57345080 - Ccdc33 protein_coding retained_intron MGP_CASTEiJ_T0092761.1 MGP_CASTEiJ_G0033887.1 mouse_genomes_project 9 57350647 57366686 - Ccdc33 protein_coding retained_intron MGP_CASTEiJ_T0092762.1 MGP_CASTEiJ_G0033887.1 mouse_genomes_project 9 57376193 57384430 - MGP_CASTEiJ_P0092762 Ccdc33 protein_coding protein_coding MGP_CASTEiJ_T0092022.1 MGP_CASTEiJ_G0033631.1 mouse_genomes_project 9 37182727 37272941 + MGP_CASTEiJ_P0092022 protein_coding protein_coding MGP_CASTEiJ_T0009048.1 MGP_CASTEiJ_G0007288.1 mouse_genomes_project 9 81968851 81974423 + Gm27226 lincRNA lincRNA MGP_CASTEiJ_T0093947.1 MGP_CASTEiJ_G0034150.1 mouse_genomes_project 9 98829366 98855161 + MGP_CASTEiJ_P0093947 Rbp2 protein_coding protein_coding MGP_CASTEiJ_T0093948.1 MGP_CASTEiJ_G0034150.1 mouse_genomes_project 9 98829417 98855032 + MGP_CASTEiJ_P0093948 Rbp2 protein_coding protein_coding MGP_CASTEiJ_T0093949.1 MGP_CASTEiJ_G0034150.1 mouse_genomes_project 9 98833780 98855151 + MGP_CASTEiJ_P0093949 Rbp2 protein_coding protein_coding MGP_CASTEiJ_T0093950.1 MGP_CASTEiJ_G0034150.1 mouse_genomes_project 9 98834940 98842111 + Rbp2 protein_coding processed_transcript MGP_CASTEiJ_T0093625.1 MGP_CASTEiJ_G0034088.1 mouse_genomes_project 9 84441351 84471920 + MGP_CASTEiJ_P0093625 Ttk protein_coding unknown_likely_coding MGP_CASTEiJ_T0093626.1 MGP_CASTEiJ_G0034088.1 mouse_genomes_project 9 84441427 84478993 + Ttk protein_coding retained_intron MGP_CASTEiJ_T0093627.1 MGP_CASTEiJ_G0034088.1 mouse_genomes_project 9 84441428 84481885 + MGP_CASTEiJ_P0093627 Ttk protein_coding protein_coding MGP_CASTEiJ_T0093628.1 MGP_CASTEiJ_G0034088.1 mouse_genomes_project 9 84441455 84481882 + MGP_CASTEiJ_P0093628 Ttk protein_coding protein_coding MGP_CASTEiJ_T0093629.1 MGP_CASTEiJ_G0034088.1 mouse_genomes_project 9 84441471 84444251 + Ttk protein_coding retained_intron MGP_CASTEiJ_T0093630.1 MGP_CASTEiJ_G0034088.1 mouse_genomes_project 9 84441478 84451150 + Ttk protein_coding processed_transcript MGP_CASTEiJ_T0093631.1 MGP_CASTEiJ_G0034088.1 mouse_genomes_project 9 84441503 84449815 + MGP_CASTEiJ_P0093631 Ttk protein_coding protein_coding MGP_CASTEiJ_T0093632.1 MGP_CASTEiJ_G0034088.1 mouse_genomes_project 9 84442527 84481564 + MGP_CASTEiJ_P0093632 Ttk protein_coding unknown_likely_coding MGP_CASTEiJ_T0002291.1 MGP_CASTEiJ_G0002209.1 mouse_genomes_project 9 71930892 71934108 - TEC TEC MGP_CASTEiJ_T0091982.1 MGP_CASTEiJ_G0033597.1 mouse_genomes_project 9 36286299 36287367 + MGP_CASTEiJ_P0091982 Olfr25 protein_coding protein_coding MGP_CASTEiJ_T0005333.1 MGP_CASTEiJ_G0004518.1 mouse_genomes_project 9 76148836 76267434 - Gm26903 antisense antisense MGP_CASTEiJ_T0092300.1 MGP_CASTEiJ_G0033740.1 mouse_genomes_project 9 43774947 43791179 - MGP_CASTEiJ_P0092300 Il10ra protein_coding protein_coding MGP_CASTEiJ_T0092301.1 MGP_CASTEiJ_G0033740.1 mouse_genomes_project 9 43774950 43791179 - MGP_CASTEiJ_P0092301 Il10ra protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092302.1 MGP_CASTEiJ_G0033740.1 mouse_genomes_project 9 43775636 43791176 - MGP_CASTEiJ_P0092302 Il10ra protein_coding protein_coding MGP_CASTEiJ_T0094123.1 MGP_CASTEiJ_G0034192.1 mouse_genomes_project 9 103827197 103873365 - MGP_CASTEiJ_P0094123 1300017J02Rik protein_coding protein_coding MGP_CASTEiJ_T0094124.1 MGP_CASTEiJ_G0034192.1 mouse_genomes_project 9 103827198 103835037 - 1300017J02Rik protein_coding retained_intron MGP_CASTEiJ_T0094125.1 MGP_CASTEiJ_G0034192.1 mouse_genomes_project 9 103827301 103873289 - MGP_CASTEiJ_P0094125 1300017J02Rik protein_coding protein_coding MGP_CASTEiJ_T0094126.1 MGP_CASTEiJ_G0034192.1 mouse_genomes_project 9 103828519 103845615 - MGP_CASTEiJ_P0094126 1300017J02Rik protein_coding protein_coding MGP_CASTEiJ_T0094127.1 MGP_CASTEiJ_G0034192.1 mouse_genomes_project 9 103855825 103873365 - 1300017J02Rik protein_coding processed_transcript MGP_CASTEiJ_T0094128.1 MGP_CASTEiJ_G0034192.1 mouse_genomes_project 9 103867891 103888997 - MGP_CASTEiJ_P0094128 1300017J02Rik protein_coding protein_coding MGP_CASTEiJ_T0093816.1 MGP_CASTEiJ_G0034125.1 mouse_genomes_project 9 92587118 92624068 + MGP_CASTEiJ_P0093816 Plscr4 protein_coding protein_coding MGP_CASTEiJ_T0093817.1 MGP_CASTEiJ_G0034125.1 mouse_genomes_project 9 92587139 92617030 + Plscr4 protein_coding retained_intron MGP_CASTEiJ_T0002337.1 MGP_CASTEiJ_G0002254.1 mouse_genomes_project 9 91437760 91439574 - TEC TEC MGP_CASTEiJ_T0101350.1 MGP_CASTEiJ_G0038263.1 mouse_genomes_project 9 2063275 2063410 + Gm24896 snoRNA snoRNA MGP_CASTEiJ_T0093344.1 MGP_CASTEiJ_G0034021.1 mouse_genomes_project 9 72802146 72895928 + MGP_CASTEiJ_P0093344 Nedd4 protein_coding protein_coding MGP_CASTEiJ_T0093345.1 MGP_CASTEiJ_G0034021.1 mouse_genomes_project 9 72802238 72812854 + Nedd4 protein_coding retained_intron MGP_CASTEiJ_T0093346.1 MGP_CASTEiJ_G0034021.1 mouse_genomes_project 9 72802282 72864568 + MGP_CASTEiJ_P0093346 Nedd4 protein_coding protein_coding MGP_CASTEiJ_T0093347.1 MGP_CASTEiJ_G0034021.1 mouse_genomes_project 9 72802287 72856007 + MGP_CASTEiJ_P0093347 Nedd4 protein_coding protein_coding MGP_CASTEiJ_T0093348.1 MGP_CASTEiJ_G0034021.1 mouse_genomes_project 9 72802290 72803094 + Nedd4 protein_coding processed_transcript MGP_CASTEiJ_T0093349.1 MGP_CASTEiJ_G0034021.1 mouse_genomes_project 9 72809811 72812835 + Nedd4 protein_coding retained_intron MGP_CASTEiJ_T0093350.1 MGP_CASTEiJ_G0034021.1 mouse_genomes_project 9 72809812 72864133 + MGP_CASTEiJ_P0093350 Nedd4 protein_coding protein_coding MGP_CASTEiJ_T0093351.1 MGP_CASTEiJ_G0034021.1 mouse_genomes_project 9 72883110 72894232 + MGP_CASTEiJ_P0093351 Nedd4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093352.1 MGP_CASTEiJ_G0034021.1 mouse_genomes_project 9 72885735 72893227 + Nedd4 protein_coding retained_intron MGP_CASTEiJ_T0093353.1 MGP_CASTEiJ_G0034021.1 mouse_genomes_project 9 72890055 72893337 + Nedd4 protein_coding retained_intron MGP_CASTEiJ_T0101419.1 MGP_CASTEiJ_G0038332.1 mouse_genomes_project 9 121932326 121932480 + Gm24044 snoRNA snoRNA MGP_CASTEiJ_T0091872.1 MGP_CASTEiJ_G0033552.1 mouse_genomes_project 9 34332088 34335146 + MGP_CASTEiJ_P0091872 Gm7257 protein_coding protein_coding MGP_CASTEiJ_T0098678.1 MGP_CASTEiJ_G0035609.1 mouse_genomes_project 9 96766392 96766474 - Gm27289 rRNA rRNA MGP_CASTEiJ_T0091731.1 MGP_CASTEiJ_G0033512.1 mouse_genomes_project 9 24883493 24917252 + MGP_CASTEiJ_P0091731 Igsf9b protein_coding protein_coding MGP_CASTEiJ_T0091732.1 MGP_CASTEiJ_G0033512.1 mouse_genomes_project 9 24883495 24921883 + MGP_CASTEiJ_P0091732 Igsf9b protein_coding protein_coding MGP_CASTEiJ_T0091733.1 MGP_CASTEiJ_G0033512.1 mouse_genomes_project 9 24883719 24938366 + MGP_CASTEiJ_P0091733 Igsf9b protein_coding unknown_likely_coding MGP_CASTEiJ_T0095030.1 MGP_CASTEiJ_G0034332.1 mouse_genomes_project 9 111144626 111174682 + MGP_CASTEiJ_P0095030 Smarcc1 protein_coding protein_coding MGP_CASTEiJ_T0095031.1 MGP_CASTEiJ_G0034332.1 mouse_genomes_project 9 111156980 111271591 + MGP_CASTEiJ_P0095031 Smarcc1 protein_coding protein_coding MGP_CASTEiJ_T0095032.1 MGP_CASTEiJ_G0034332.1 mouse_genomes_project 9 111157037 111244186 + Smarcc1 protein_coding retained_intron MGP_CASTEiJ_T0095033.1 MGP_CASTEiJ_G0034332.1 mouse_genomes_project 9 111157037 111266809 + MGP_CASTEiJ_P0095033 Smarcc1 protein_coding protein_coding MGP_CASTEiJ_T0095034.1 MGP_CASTEiJ_G0034332.1 mouse_genomes_project 9 111157037 111271591 + MGP_CASTEiJ_P0095034 Smarcc1 protein_coding protein_coding MGP_CASTEiJ_T0095035.1 MGP_CASTEiJ_G0034332.1 mouse_genomes_project 9 111157037 111214131 + MGP_CASTEiJ_P0095035 Smarcc1 protein_coding protein_coding MGP_CASTEiJ_T0095036.1 MGP_CASTEiJ_G0034332.1 mouse_genomes_project 9 111215558 111236411 + Smarcc1 protein_coding retained_intron MGP_CASTEiJ_T0095037.1 MGP_CASTEiJ_G0034332.1 mouse_genomes_project 9 111266425 111269024 + MGP_CASTEiJ_P0095037 Smarcc1 protein_coding protein_coding MGP_CASTEiJ_T0095038.1 MGP_CASTEiJ_G0034332.1 mouse_genomes_project 9 111268019 111269015 + Smarcc1 protein_coding retained_intron MGP_CASTEiJ_T0100106.1 MGP_CASTEiJ_G0037019.1 mouse_genomes_project 9 12293448 12293603 - Gm22658 snRNA snRNA MGP_CASTEiJ_T0005338.1 MGP_CASTEiJ_G0004523.1 mouse_genomes_project 9 80763566 80765742 - Gm27227 antisense antisense MGP_CASTEiJ_T0095278.1 MGP_CASTEiJ_G0034386.1 mouse_genomes_project 9 116392418 116652197 + MGP_CASTEiJ_P0095278 Osbpl10 protein_coding protein_coding MGP_CASTEiJ_T0095279.1 MGP_CASTEiJ_G0034386.1 mouse_genomes_project 9 116404181 116652199 + MGP_CASTEiJ_P0095279 Osbpl10 protein_coding protein_coding MGP_CASTEiJ_T0095280.1 MGP_CASTEiJ_G0034386.1 mouse_genomes_project 9 116412587 116585713 + MGP_CASTEiJ_P0095280 Osbpl10 protein_coding protein_coding MGP_CASTEiJ_T0095281.1 MGP_CASTEiJ_G0034386.1 mouse_genomes_project 9 116432880 116652193 + MGP_CASTEiJ_P0095281 Osbpl10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095282.1 MGP_CASTEiJ_G0034386.1 mouse_genomes_project 9 116473710 116486447 + MGP_CASTEiJ_P0095282 Osbpl10 protein_coding protein_coding MGP_CASTEiJ_T0095283.1 MGP_CASTEiJ_G0034386.1 mouse_genomes_project 9 116486413 116652197 + MGP_CASTEiJ_P0095283 Osbpl10 protein_coding protein_coding MGP_CASTEiJ_T0095284.1 MGP_CASTEiJ_G0034386.1 mouse_genomes_project 9 116500576 116638742 + Osbpl10 protein_coding processed_transcript MGP_CASTEiJ_T0095285.1 MGP_CASTEiJ_G0034386.1 mouse_genomes_project 9 116535807 116637159 + Osbpl10 protein_coding processed_transcript MGP_CASTEiJ_T0095286.1 MGP_CASTEiJ_G0034386.1 mouse_genomes_project 9 116628603 116652204 + MGP_CASTEiJ_P0095286 Osbpl10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100130.1 MGP_CASTEiJ_G0037043.1 mouse_genomes_project 9 63031530 63031671 + Gm25995 snRNA snRNA MGP_CASTEiJ_T0091980.1 MGP_CASTEiJ_G0033595.1 mouse_genomes_project 9 36212727 36213669 + MGP_CASTEiJ_P0091980 Olfr143 protein_coding protein_coding MGP_CASTEiJ_T0092032.1 MGP_CASTEiJ_G0033641.1 mouse_genomes_project 9 37760150 37776995 - MGP_CASTEiJ_P0092032 AW551984 protein_coding protein_coding MGP_CASTEiJ_T0092033.1 MGP_CASTEiJ_G0033641.1 mouse_genomes_project 9 37760274 37776554 - MGP_CASTEiJ_P0092033 AW551984 protein_coding protein_coding MGP_CASTEiJ_T0092034.1 MGP_CASTEiJ_G0033641.1 mouse_genomes_project 9 37761724 37763742 - AW551984 protein_coding retained_intron MGP_CASTEiJ_T0092035.1 MGP_CASTEiJ_G0033641.1 mouse_genomes_project 9 37763353 37764977 - AW551984 protein_coding retained_intron MGP_CASTEiJ_T0092036.1 MGP_CASTEiJ_G0033641.1 mouse_genomes_project 9 37772534 37777300 - MGP_CASTEiJ_P0092036 AW551984 protein_coding protein_coding MGP_CASTEiJ_T0092037.1 MGP_CASTEiJ_G0033641.1 mouse_genomes_project 9 37773171 37776494 - AW551984 protein_coding retained_intron MGP_CASTEiJ_T0092038.1 MGP_CASTEiJ_G0033641.1 mouse_genomes_project 9 37773431 37776247 - MGP_CASTEiJ_P0092038 AW551984 protein_coding protein_coding MGP_CASTEiJ_T0091445.1 MGP_CASTEiJ_G0033394.1 mouse_genomes_project 9 16182284 16183223 + MGP_CASTEiJ_P0091445 Olfr834 protein_coding protein_coding MGP_CASTEiJ_T0092833.1 MGP_CASTEiJ_G0033905.1 mouse_genomes_project 9 58898916 58924223 + MGP_CASTEiJ_P0092833 Hexa protein_coding protein_coding MGP_CASTEiJ_T0015510.1 MGP_CASTEiJ_G0013673.1 mouse_genomes_project 9 95603278 95603979 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092423.1 MGP_CASTEiJ_G0033780.1 mouse_genomes_project 9 48295363 48342665 + MGP_CASTEiJ_P0092423 Gm11149 protein_coding protein_coding MGP_CASTEiJ_T0009117.1 MGP_CASTEiJ_G0007340.1 mouse_genomes_project 9 121182733 121189822 - 4930516B21Rik lincRNA lincRNA MGP_CASTEiJ_T0093279.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71921622 72200062 - MGP_CASTEiJ_P0093279 Tcf12 protein_coding protein_coding MGP_CASTEiJ_T0093280.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71923153 71976806 - Tcf12 protein_coding retained_intron MGP_CASTEiJ_T0093281.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71923169 72200036 - MGP_CASTEiJ_P0093281 Tcf12 protein_coding protein_coding MGP_CASTEiJ_T0093282.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71923174 71977110 - MGP_CASTEiJ_P0093282 Tcf12 protein_coding protein_coding MGP_CASTEiJ_T0093283.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71923178 72200021 - MGP_CASTEiJ_P0093283 Tcf12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093284.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71923624 72199865 - MGP_CASTEiJ_P0093284 Tcf12 protein_coding protein_coding MGP_CASTEiJ_T0093285.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71924413 72200086 - MGP_CASTEiJ_P0093285 Tcf12 protein_coding protein_coding MGP_CASTEiJ_T0093286.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71928793 71976809 - MGP_CASTEiJ_P0093286 Tcf12 protein_coding protein_coding MGP_CASTEiJ_T0093287.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71928796 72200027 - MGP_CASTEiJ_P0093287 Tcf12 protein_coding protein_coding MGP_CASTEiJ_T0093288.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71937481 72199416 - MGP_CASTEiJ_P0093288 Tcf12 protein_coding protein_coding MGP_CASTEiJ_T0093289.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71948115 71965621 - Tcf12 protein_coding processed_transcript MGP_CASTEiJ_T0093290.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71956583 72197977 - MGP_CASTEiJ_P0093290 Tcf12 protein_coding protein_coding MGP_CASTEiJ_T0093291.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71956583 71976705 - MGP_CASTEiJ_P0093291 Tcf12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093292.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71963322 72084995 - MGP_CASTEiJ_P0093292 Tcf12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093293.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71963712 72084993 - MGP_CASTEiJ_P0093293 Tcf12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093294.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71964333 72199986 - MGP_CASTEiJ_P0093294 Tcf12 protein_coding protein_coding MGP_CASTEiJ_T0093295.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71964354 72199814 - MGP_CASTEiJ_P0093295 Tcf12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093296.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71965228 72008762 - MGP_CASTEiJ_P0093296 Tcf12 protein_coding protein_coding MGP_CASTEiJ_T0093297.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 71966125 72200006 - MGP_CASTEiJ_P0093297 Tcf12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093298.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 72028525 72200062 - Tcf12 protein_coding retained_intron MGP_CASTEiJ_T0093299.1 MGP_CASTEiJ_G0034016.1 mouse_genomes_project 9 72192990 72198733 - Tcf12 protein_coding retained_intron MGP_CASTEiJ_T0005334.1 MGP_CASTEiJ_G0004519.1 mouse_genomes_project 9 76597058 76598331 + Gm27234 antisense antisense MGP_CASTEiJ_T0015515.1 MGP_CASTEiJ_G0013678.1 mouse_genomes_project 9 96810861 96811543 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095343.1 MGP_CASTEiJ_G0034399.1 mouse_genomes_project 9 120787662 120810252 + Dlec1 protein_coding retained_intron MGP_CASTEiJ_T0095344.1 MGP_CASTEiJ_G0034399.1 mouse_genomes_project 9 120787662 120841005 + MGP_CASTEiJ_P0095344 Dlec1 protein_coding protein_coding MGP_CASTEiJ_T0095345.1 MGP_CASTEiJ_G0034399.1 mouse_genomes_project 9 120787662 120838779 + MGP_CASTEiJ_P0095345 Dlec1 protein_coding protein_coding MGP_CASTEiJ_T0095346.1 MGP_CASTEiJ_G0034399.1 mouse_genomes_project 9 120787693 120821864 + MGP_CASTEiJ_P0095346 Dlec1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095347.1 MGP_CASTEiJ_G0034399.1 mouse_genomes_project 9 120804596 120831459 + Dlec1 protein_coding retained_intron MGP_CASTEiJ_T0095348.1 MGP_CASTEiJ_G0034399.1 mouse_genomes_project 9 120811987 120813205 + Dlec1 protein_coding retained_intron MGP_CASTEiJ_T0095349.1 MGP_CASTEiJ_G0034399.1 mouse_genomes_project 9 120813341 120821862 + Dlec1 protein_coding retained_intron MGP_CASTEiJ_T0095350.1 MGP_CASTEiJ_G0034399.1 mouse_genomes_project 9 120813492 120815214 + Dlec1 protein_coding retained_intron MGP_CASTEiJ_T0093144.1 MGP_CASTEiJ_G0033986.1 mouse_genomes_project 9 66705870 66787735 - MGP_CASTEiJ_P0093144 Rab8b protein_coding protein_coding MGP_CASTEiJ_T0095136.1 MGP_CASTEiJ_G0034353.1 mouse_genomes_project 9 111954078 111956938 + Als2cl protein_coding processed_transcript MGP_CASTEiJ_T0095137.1 MGP_CASTEiJ_G0034353.1 mouse_genomes_project 9 111954382 111979300 + MGP_CASTEiJ_P0095137 Als2cl protein_coding protein_coding MGP_CASTEiJ_T0095138.1 MGP_CASTEiJ_G0034353.1 mouse_genomes_project 9 111954414 111979306 + MGP_CASTEiJ_P0095138 Als2cl protein_coding protein_coding MGP_CASTEiJ_T0095139.1 MGP_CASTEiJ_G0034353.1 mouse_genomes_project 9 111954441 111959013 + MGP_CASTEiJ_P0095139 Als2cl protein_coding protein_coding MGP_CASTEiJ_T0095140.1 MGP_CASTEiJ_G0034353.1 mouse_genomes_project 9 111954545 111979303 + MGP_CASTEiJ_P0095140 Als2cl protein_coding protein_coding MGP_CASTEiJ_T0095141.1 MGP_CASTEiJ_G0034353.1 mouse_genomes_project 9 111959872 111961405 + Als2cl protein_coding retained_intron MGP_CASTEiJ_T0095142.1 MGP_CASTEiJ_G0034353.1 mouse_genomes_project 9 111960413 111966934 + Als2cl protein_coding retained_intron MGP_CASTEiJ_T0095143.1 MGP_CASTEiJ_G0034353.1 mouse_genomes_project 9 111964748 111979304 + Als2cl protein_coding processed_transcript MGP_CASTEiJ_T0010788.1 MGP_CASTEiJ_G0008976.1 mouse_genomes_project 9 110896730 110896798 + Mir7089 miRNA miRNA MGP_CASTEiJ_T0092795.1 MGP_CASTEiJ_G0033894.1 mouse_genomes_project 9 57643966 57655569 - MGP_CASTEiJ_P0092795 Tbc1d21 protein_coding protein_coding MGP_CASTEiJ_T0015470.1 MGP_CASTEiJ_G0013633.1 mouse_genomes_project 9 77324933 77325136 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092671.1 MGP_CASTEiJ_G0033860.1 mouse_genomes_project 9 56101524 56140786 + MGP_CASTEiJ_P0092671 Snupn protein_coding protein_coding MGP_CASTEiJ_T0092007.1 MGP_CASTEiJ_G0033616.1 mouse_genomes_project 9 36763388 36766657 + MGP_CASTEiJ_P0092007 Olfr921 protein_coding protein_coding MGP_CASTEiJ_T0092217.1 MGP_CASTEiJ_G0033717.1 mouse_genomes_project 9 42942954 42973308 + MGP_CASTEiJ_P0092217 Bcl9l protein_coding unknown_likely_coding MGP_CASTEiJ_T0002304.1 MGP_CASTEiJ_G0002222.1 mouse_genomes_project 9 72835339 72838842 + TEC TEC MGP_CASTEiJ_T0092535.1 MGP_CASTEiJ_G0033812.1 mouse_genomes_project 9 52021227 52185362 - MGP_CASTEiJ_P0092535 Ddx10 protein_coding protein_coding MGP_CASTEiJ_T0092536.1 MGP_CASTEiJ_G0033812.1 mouse_genomes_project 9 52021402 52185284 - MGP_CASTEiJ_P0092536 Ddx10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092660.1 MGP_CASTEiJ_G0033854.1 mouse_genomes_project 9 55522339 55600804 + MGP_CASTEiJ_P0092660 Hmg20a protein_coding protein_coding MGP_CASTEiJ_T0092661.1 MGP_CASTEiJ_G0033854.1 mouse_genomes_project 9 55564474 55642437 + MGP_CASTEiJ_P0092661 Hmg20a protein_coding unknown_likely_coding MGP_CASTEiJ_T0092287.1 MGP_CASTEiJ_G0033735.1 mouse_genomes_project 9 43623385 43652258 - MGP_CASTEiJ_P0092287 Gm10684 protein_coding protein_coding MGP_CASTEiJ_T0100168.1 MGP_CASTEiJ_G0037081.1 mouse_genomes_project 9 120112917 120112998 - Gm22479 snRNA snRNA MGP_CASTEiJ_T0099032.1 MGP_CASTEiJ_G0035950.1 mouse_genomes_project 9 116621418 116624895 + Gm27002 sense_intronic sense_intronic MGP_CASTEiJ_T0002311.1 MGP_CASTEiJ_G0002229.1 mouse_genomes_project 9 73313194 73315427 + TEC TEC MGP_CASTEiJ_T0005288.1 MGP_CASTEiJ_G0004490.1 mouse_genomes_project 9 38909991 38911057 - Gm16095 antisense antisense MGP_CASTEiJ_T0002331.1 MGP_CASTEiJ_G0002248.1 mouse_genomes_project 9 88452818 88454647 - TEC TEC MGP_CASTEiJ_T0091459.1 MGP_CASTEiJ_G0033408.1 mouse_genomes_project 9 16956219 16957002 + MGP_CASTEiJ_P0091459 Olfr857 protein_coding protein_coding MGP_CASTEiJ_T0005383.1 MGP_CASTEiJ_G0004553.1 mouse_genomes_project 9 107739564 107741860 + 4930524O07Rik antisense antisense MGP_CASTEiJ_T0005384.1 MGP_CASTEiJ_G0004553.1 mouse_genomes_project 9 107740188 107741858 + 4930524O07Rik antisense antisense MGP_CASTEiJ_T0005385.1 MGP_CASTEiJ_G0004553.1 mouse_genomes_project 9 107740631 107743207 + 4930524O07Rik antisense antisense MGP_CASTEiJ_T0015517.1 MGP_CASTEiJ_G0013680.1 mouse_genomes_project 9 97101989 97102258 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095416.1 MGP_CASTEiJ_G0034426.1 mouse_genomes_project 9 122424365 122427501 + MGP_CASTEiJ_P0095416 Rpl14 protein_coding protein_coding MGP_CASTEiJ_T0095271.1 MGP_CASTEiJ_G0034382.1 mouse_genomes_project 9 116139155 116156225 + MGP_CASTEiJ_P0095271 Cmtm6 protein_coding protein_coding MGP_CASTEiJ_T0093743.1 MGP_CASTEiJ_G0034110.1 mouse_genomes_project 9 89388317 89424308 + protein_coding processed_transcript MGP_CASTEiJ_T0015429.1 MGP_CASTEiJ_G0013592.1 mouse_genomes_project 9 33508998 33509268 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092304.1 MGP_CASTEiJ_G0033742.1 mouse_genomes_project 9 43896024 43922875 + MGP_CASTEiJ_P0092304 Fxyd6 protein_coding protein_coding MGP_CASTEiJ_T0093577.1 MGP_CASTEiJ_G0034081.1 mouse_genomes_project 9 82417502 82756983 + MGP_CASTEiJ_P0093577 Mei4 protein_coding protein_coding MGP_CASTEiJ_T0093578.1 MGP_CASTEiJ_G0034081.1 mouse_genomes_project 9 82417553 82579922 + MGP_CASTEiJ_P0093578 Mei4 protein_coding protein_coding MGP_CASTEiJ_T0009062.1 MGP_CASTEiJ_G0007298.1 mouse_genomes_project 9 91439845 91442785 + Gm28652 lincRNA lincRNA MGP_CASTEiJ_T0092951.1 MGP_CASTEiJ_G0033932.1 mouse_genomes_project 9 62745986 62962318 - MGP_CASTEiJ_P0092951 Map2k5 protein_coding protein_coding MGP_CASTEiJ_T0094571.1 MGP_CASTEiJ_G0034264.1 mouse_genomes_project 9 108661913 108757482 - MGP_CASTEiJ_P0094571 protein_coding unknown_likely_coding MGP_CASTEiJ_T0094572.1 MGP_CASTEiJ_G0034264.1 mouse_genomes_project 9 108661913 108748908 - MGP_CASTEiJ_P0094572 protein_coding unknown_likely_coding MGP_CASTEiJ_T0094573.1 MGP_CASTEiJ_G0034264.1 mouse_genomes_project 9 108661922 108770163 - MGP_CASTEiJ_P0094573 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094574.1 MGP_CASTEiJ_G0034264.1 mouse_genomes_project 9 108666309 108668608 - protein_coding retained_intron MGP_CASTEiJ_T0094575.1 MGP_CASTEiJ_G0034264.1 mouse_genomes_project 9 108677428 108682044 - protein_coding retained_intron MGP_CASTEiJ_T0094576.1 MGP_CASTEiJ_G0034264.1 mouse_genomes_project 9 108677660 108682598 - MGP_CASTEiJ_P0094576 protein_coding protein_coding MGP_CASTEiJ_T0094577.1 MGP_CASTEiJ_G0034264.1 mouse_genomes_project 9 108682606 108770133 - MGP_CASTEiJ_P0094577 protein_coding protein_coding MGP_CASTEiJ_T0094578.1 MGP_CASTEiJ_G0034264.1 mouse_genomes_project 9 108690755 108770135 - protein_coding processed_transcript MGP_CASTEiJ_T0094579.1 MGP_CASTEiJ_G0034264.1 mouse_genomes_project 9 108702182 108740635 - protein_coding processed_transcript MGP_CASTEiJ_T0094580.1 MGP_CASTEiJ_G0034264.1 mouse_genomes_project 9 108740520 108746214 - protein_coding retained_intron MGP_CASTEiJ_T0094581.1 MGP_CASTEiJ_G0034264.1 mouse_genomes_project 9 108755345 108770122 - protein_coding retained_intron MGP_CASTEiJ_T0094582.1 MGP_CASTEiJ_G0034264.1 mouse_genomes_project 9 108765488 108770637 - protein_coding retained_intron MGP_CASTEiJ_T0101388.1 MGP_CASTEiJ_G0038301.1 mouse_genomes_project 9 68194845 68194975 + Gm22382 snoRNA snoRNA MGP_CASTEiJ_T0017752.1 MGP_CASTEiJ_G0015047.1 mouse_genomes_project 9 33015984 33030226 + 4930581F22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017753.1 MGP_CASTEiJ_G0015047.1 mouse_genomes_project 9 33016023 33017520 + 4930581F22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017754.1 MGP_CASTEiJ_G0015047.1 mouse_genomes_project 9 33016664 33022941 + 4930581F22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017755.1 MGP_CASTEiJ_G0015047.1 mouse_genomes_project 9 33017231 33025695 + 4930581F22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017756.1 MGP_CASTEiJ_G0015047.1 mouse_genomes_project 9 33017315 33023369 + 4930581F22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017757.1 MGP_CASTEiJ_G0015047.1 mouse_genomes_project 9 33017445 33026203 + 4930581F22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0093459.1 MGP_CASTEiJ_G0034052.1 mouse_genomes_project 9 76490816 76601097 - MGP_CASTEiJ_P0093459 Hcrtr2 protein_coding protein_coding MGP_CASTEiJ_T0093460.1 MGP_CASTEiJ_G0034052.1 mouse_genomes_project 9 76496346 76601342 - MGP_CASTEiJ_P0093460 Hcrtr2 protein_coding protein_coding MGP_CASTEiJ_T0093461.1 MGP_CASTEiJ_G0034052.1 mouse_genomes_project 9 76497443 76601076 - MGP_CASTEiJ_P0093461 Hcrtr2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093462.1 MGP_CASTEiJ_G0034052.1 mouse_genomes_project 9 76599171 76600808 - Hcrtr2 protein_coding retained_intron MGP_CASTEiJ_T0005280.1 MGP_CASTEiJ_G0004482.1 mouse_genomes_project 9 21806914 21811012 - Gm15600 antisense antisense MGP_CASTEiJ_T0091542.1 MGP_CASTEiJ_G0033439.1 mouse_genomes_project 9 18353574 18367741 + MGP_CASTEiJ_P0091542 Icam1 protein_coding protein_coding MGP_CASTEiJ_T0091563.1 MGP_CASTEiJ_G0033449.1 mouse_genomes_project 9 18593663 18598599 - MGP_CASTEiJ_P0091563 S1pr5 protein_coding protein_coding MGP_CASTEiJ_T0015482.1 MGP_CASTEiJ_G0013645.1 mouse_genomes_project 9 83641215 83641381 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093560.1 MGP_CASTEiJ_G0034078.1 mouse_genomes_project 9 80656528 80815272 + MGP_CASTEiJ_P0093560 Myo6 protein_coding protein_coding MGP_CASTEiJ_T0093561.1 MGP_CASTEiJ_G0034078.1 mouse_genomes_project 9 80656535 80661015 + Myo6 protein_coding retained_intron MGP_CASTEiJ_T0093562.1 MGP_CASTEiJ_G0034078.1 mouse_genomes_project 9 80656537 80815271 + MGP_CASTEiJ_P0093562 Myo6 protein_coding protein_coding MGP_CASTEiJ_T0093563.1 MGP_CASTEiJ_G0034078.1 mouse_genomes_project 9 80656725 80811638 + MGP_CASTEiJ_P0093563 Myo6 protein_coding protein_coding MGP_CASTEiJ_T0093564.1 MGP_CASTEiJ_G0034078.1 mouse_genomes_project 9 80713816 80811591 + MGP_CASTEiJ_P0093564 Myo6 protein_coding protein_coding MGP_CASTEiJ_T0093565.1 MGP_CASTEiJ_G0034078.1 mouse_genomes_project 9 80713834 80815272 + MGP_CASTEiJ_P0093565 Myo6 protein_coding protein_coding MGP_CASTEiJ_T0093566.1 MGP_CASTEiJ_G0034078.1 mouse_genomes_project 9 80713842 80815272 + MGP_CASTEiJ_P0093566 Myo6 protein_coding protein_coding MGP_CASTEiJ_T0093567.1 MGP_CASTEiJ_G0034078.1 mouse_genomes_project 9 80762371 80766955 + Myo6 protein_coding retained_intron MGP_CASTEiJ_T0093568.1 MGP_CASTEiJ_G0034078.1 mouse_genomes_project 9 80786927 80788016 + Myo6 protein_coding retained_intron MGP_CASTEiJ_T0093569.1 MGP_CASTEiJ_G0034078.1 mouse_genomes_project 9 80787789 80794066 + Myo6 protein_coding retained_intron MGP_CASTEiJ_T0093570.1 MGP_CASTEiJ_G0034078.1 mouse_genomes_project 9 80809264 80811336 + Myo6 protein_coding processed_transcript MGP_CASTEiJ_T0093571.1 MGP_CASTEiJ_G0034078.1 mouse_genomes_project 9 80810453 80812143 + Myo6 protein_coding retained_intron MGP_CASTEiJ_T0091630.1 MGP_CASTEiJ_G0033471.1 mouse_genomes_project 9 19330094 19339370 + MGP_CASTEiJ_P0091630 Ccdc159 protein_coding protein_coding MGP_CASTEiJ_T0091631.1 MGP_CASTEiJ_G0033471.1 mouse_genomes_project 9 19330094 19339370 + MGP_CASTEiJ_P0091631 Ccdc159 protein_coding protein_coding MGP_CASTEiJ_T0093441.1 MGP_CASTEiJ_G0034044.1 mouse_genomes_project 9 75669717 75696124 + MGP_CASTEiJ_P0093441 Leo1 protein_coding protein_coding MGP_CASTEiJ_T0093442.1 MGP_CASTEiJ_G0034044.1 mouse_genomes_project 9 75669736 75696133 + MGP_CASTEiJ_P0093442 Leo1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0005292.1 MGP_CASTEiJ_G0004493.1 mouse_genomes_project 9 43689911 43692077 + Gm17099 antisense antisense MGP_CASTEiJ_T0005283.1 MGP_CASTEiJ_G0004485.1 mouse_genomes_project 9 30330165 30338709 + Gm27201 antisense antisense MGP_CASTEiJ_T0091735.1 MGP_CASTEiJ_G0033514.1 mouse_genomes_project 9 25394080 25394831 + Opcml protein_coding processed_transcript MGP_CASTEiJ_T0091736.1 MGP_CASTEiJ_G0033514.1 mouse_genomes_project 9 25394252 26588932 + MGP_CASTEiJ_P0091736 Opcml protein_coding protein_coding MGP_CASTEiJ_T0091737.1 MGP_CASTEiJ_G0033514.1 mouse_genomes_project 9 25394607 25644305 + Opcml protein_coding processed_transcript MGP_CASTEiJ_T0091738.1 MGP_CASTEiJ_G0033514.1 mouse_genomes_project 9 26031210 26034014 + Opcml protein_coding processed_transcript MGP_CASTEiJ_T0091739.1 MGP_CASTEiJ_G0033514.1 mouse_genomes_project 9 26031858 26584601 + MGP_CASTEiJ_P0091739 Opcml protein_coding protein_coding MGP_CASTEiJ_T0091740.1 MGP_CASTEiJ_G0033514.1 mouse_genomes_project 9 26032145 26469839 + Opcml protein_coding retained_intron MGP_CASTEiJ_T0091741.1 MGP_CASTEiJ_G0033514.1 mouse_genomes_project 9 26032231 26292053 + Opcml protein_coding processed_transcript MGP_CASTEiJ_T0091742.1 MGP_CASTEiJ_G0033514.1 mouse_genomes_project 9 26304056 26318610 + Opcml protein_coding processed_transcript MGP_CASTEiJ_T0098683.1 MGP_CASTEiJ_G0035614.1 mouse_genomes_project 9 112750952 112751070 - n-R5s90 rRNA rRNA MGP_CASTEiJ_T0092053.1 MGP_CASTEiJ_G0033656.1 mouse_genomes_project 9 38104541 38105621 + MGP_CASTEiJ_P0092053 Olfr974 protein_coding protein_coding MGP_CASTEiJ_T0093177.1 MGP_CASTEiJ_G0033992.1 mouse_genomes_project 9 67740788 67742587 - MGP_CASTEiJ_P0093177 C2cd4a protein_coding protein_coding MGP_CASTEiJ_T0094360.1 MGP_CASTEiJ_G0034234.1 mouse_genomes_project 9 107450332 107451426 + MGP_CASTEiJ_P0094360 Iqcf6 protein_coding protein_coding MGP_CASTEiJ_T0092796.1 MGP_CASTEiJ_G0033895.1 mouse_genomes_project 9 57781401 57793719 + MGP_CASTEiJ_P0092796 6030419C18Rik protein_coding protein_coding MGP_CASTEiJ_T0091404.1 MGP_CASTEiJ_G0033376.1 mouse_genomes_project 9 12615119 12655898 + MGP_CASTEiJ_P0091404 Smco4 protein_coding protein_coding MGP_CASTEiJ_T0091405.1 MGP_CASTEiJ_G0033376.1 mouse_genomes_project 9 12631413 12655895 + MGP_CASTEiJ_P0091405 Smco4 protein_coding protein_coding MGP_CASTEiJ_T0101421.1 MGP_CASTEiJ_G0038334.1 mouse_genomes_project 9 121934002 121934151 + Snora62 snoRNA snoRNA MGP_CASTEiJ_T0009119.1 MGP_CASTEiJ_G0007342.1 mouse_genomes_project 9 122800091 122801555 - 1700020M21Rik lincRNA lincRNA MGP_CASTEiJ_T0092058.1 MGP_CASTEiJ_G0033661.1 mouse_genomes_project 9 38174991 38175924 - MGP_CASTEiJ_P0092058 Olfr980 protein_coding protein_coding MGP_CASTEiJ_T0092745.1 MGP_CASTEiJ_G0033885.1 mouse_genomes_project 9 57193806 57216466 + MGP_CASTEiJ_P0092745 Sema7a protein_coding protein_coding MGP_CASTEiJ_T0015521.1 MGP_CASTEiJ_G0013684.1 mouse_genomes_project 9 97561741 97562027 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0017786.1 MGP_CASTEiJ_G0015056.1 mouse_genomes_project 9 63660699 63663726 - 1700055C04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0091953.1 MGP_CASTEiJ_G0033574.1 mouse_genomes_project 9 35549687 35585407 + MGP_CASTEiJ_P0091953 Siae protein_coding protein_coding MGP_CASTEiJ_T0092429.1 MGP_CASTEiJ_G0033783.1 mouse_genomes_project 9 49358594 49381335 - MGP_CASTEiJ_P0092429 Bco2 protein_coding protein_coding MGP_CASTEiJ_T0100154.1 MGP_CASTEiJ_G0037067.1 mouse_genomes_project 9 90430363 90430532 + Gm22866 snRNA snRNA MGP_CASTEiJ_T0002397.1 MGP_CASTEiJ_G0002314.1 mouse_genomes_project 9 112535357 112536855 + TEC TEC MGP_CASTEiJ_T0098669.1 MGP_CASTEiJ_G0035600.1 mouse_genomes_project 9 32863611 32863741 + Gm23702 rRNA rRNA MGP_CASTEiJ_T0093178.1 MGP_CASTEiJ_G0033993.1 mouse_genomes_project 9 67750416 67922018 + MGP_CASTEiJ_P0093178 Vps13c protein_coding unknown_likely_coding MGP_CASTEiJ_T0093179.1 MGP_CASTEiJ_G0033993.1 mouse_genomes_project 9 67750475 67906835 + MGP_CASTEiJ_P0093179 Vps13c protein_coding protein_coding MGP_CASTEiJ_T0093180.1 MGP_CASTEiJ_G0033993.1 mouse_genomes_project 9 67750506 67894634 + MGP_CASTEiJ_P0093180 Vps13c protein_coding unknown_likely_coding MGP_CASTEiJ_T0005336.1 MGP_CASTEiJ_G0004521.1 mouse_genomes_project 9 79035980 79036737 - 4921509A06Rik antisense antisense MGP_CASTEiJ_T0015500.1 MGP_CASTEiJ_G0013663.1 mouse_genomes_project 9 91018724 91019016 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093871.1 MGP_CASTEiJ_G0034137.1 mouse_genomes_project 9 96345161 96413910 + MGP_CASTEiJ_P0093871 Gk5 protein_coding protein_coding MGP_CASTEiJ_T0093872.1 MGP_CASTEiJ_G0034137.1 mouse_genomes_project 9 96345174 96418336 + MGP_CASTEiJ_P0093872 Gk5 protein_coding protein_coding MGP_CASTEiJ_T0093873.1 MGP_CASTEiJ_G0034137.1 mouse_genomes_project 9 96345231 96416539 + MGP_CASTEiJ_P0093873 Gk5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093874.1 MGP_CASTEiJ_G0034137.1 mouse_genomes_project 9 96350024 96368158 + Gk5 protein_coding processed_transcript MGP_CASTEiJ_T0093875.1 MGP_CASTEiJ_G0034137.1 mouse_genomes_project 9 96404730 96407176 + Gk5 protein_coding retained_intron MGP_CASTEiJ_T0093398.1 MGP_CASTEiJ_G0034034.1 mouse_genomes_project 9 74284997 74323767 + Wdr72 protein_coding processed_transcript MGP_CASTEiJ_T0093399.1 MGP_CASTEiJ_G0034034.1 mouse_genomes_project 9 74284997 74473177 + MGP_CASTEiJ_P0093399 Wdr72 protein_coding protein_coding MGP_CASTEiJ_T0093400.1 MGP_CASTEiJ_G0034034.1 mouse_genomes_project 9 74285045 74289912 + Wdr72 protein_coding processed_transcript MGP_CASTEiJ_T0093401.1 MGP_CASTEiJ_G0034034.1 mouse_genomes_project 9 74315384 74471697 + MGP_CASTEiJ_P0093401 Wdr72 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093402.1 MGP_CASTEiJ_G0034034.1 mouse_genomes_project 9 74462984 74473282 + Wdr72 protein_coding processed_transcript MGP_CASTEiJ_T0091637.1 MGP_CASTEiJ_G0033476.1 mouse_genomes_project 9 19398979 19412934 - MGP_CASTEiJ_P0091637 Ccdc151 protein_coding protein_coding MGP_CASTEiJ_T0091638.1 MGP_CASTEiJ_G0033476.1 mouse_genomes_project 9 19398979 19412934 - MGP_CASTEiJ_P0091638 Ccdc151 protein_coding protein_coding MGP_CASTEiJ_T0092260.1 MGP_CASTEiJ_G0033725.1 mouse_genomes_project 9 43295711 43299251 - MGP_CASTEiJ_P0092260 Ttc36 protein_coding protein_coding MGP_CASTEiJ_T0092534.1 MGP_CASTEiJ_G0033811.1 mouse_genomes_project 9 51602990 51609392 - MGP_CASTEiJ_P0092534 AI593442 protein_coding protein_coding MGP_CASTEiJ_T0094982.1 MGP_CASTEiJ_G0034329.1 mouse_genomes_project 9 110883308 110888934 + MGP_CASTEiJ_P0094982 Cdc25a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094983.1 MGP_CASTEiJ_G0034329.1 mouse_genomes_project 9 110883358 110900995 + MGP_CASTEiJ_P0094983 Cdc25a protein_coding protein_coding MGP_CASTEiJ_T0094985.1 MGP_CASTEiJ_G0034329.1 mouse_genomes_project 9 110891727 110897090 + Cdc25a protein_coding retained_intron MGP_CASTEiJ_T0094986.1 MGP_CASTEiJ_G0034329.1 mouse_genomes_project 9 110895133 110899459 + Cdc25a protein_coding retained_intron MGP_CASTEiJ_T0094987.1 MGP_CASTEiJ_G0034329.1 mouse_genomes_project 9 110895904 110896439 + Cdc25a protein_coding retained_intron MGP_CASTEiJ_T0093236.1 MGP_CASTEiJ_G0034004.1 mouse_genomes_project 9 70454474 70534787 - MGP_CASTEiJ_P0093236 Rnf111 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093237.1 MGP_CASTEiJ_G0034004.1 mouse_genomes_project 9 70454481 70534740 - MGP_CASTEiJ_P0093237 Rnf111 protein_coding protein_coding MGP_CASTEiJ_T0093238.1 MGP_CASTEiJ_G0034004.1 mouse_genomes_project 9 70454482 70534369 - MGP_CASTEiJ_P0093238 Rnf111 protein_coding protein_coding MGP_CASTEiJ_T0015424.1 MGP_CASTEiJ_G0013587.1 mouse_genomes_project 9 30454767 30455185 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091618.1 MGP_CASTEiJ_G0033466.1 mouse_genomes_project 9 19160966 19197662 - MGP_CASTEiJ_P0091618 Kank2 protein_coding protein_coding MGP_CASTEiJ_T0091795.1 MGP_CASTEiJ_G0033530.1 mouse_genomes_project 9 30461730 30566146 + Ets1 protein_coding retained_intron MGP_CASTEiJ_T0091796.1 MGP_CASTEiJ_G0033530.1 mouse_genomes_project 9 30461748 30478178 + Ets1 protein_coding retained_intron MGP_CASTEiJ_T0091797.1 MGP_CASTEiJ_G0033530.1 mouse_genomes_project 9 30530297 30592330 + MGP_CASTEiJ_P0091797 Ets1 protein_coding protein_coding MGP_CASTEiJ_T0091798.1 MGP_CASTEiJ_G0033530.1 mouse_genomes_project 9 30530354 30605430 + MGP_CASTEiJ_P0091798 Ets1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091799.1 MGP_CASTEiJ_G0033530.1 mouse_genomes_project 9 30530632 30595183 + MGP_CASTEiJ_P0091799 Ets1 protein_coding protein_coding MGP_CASTEiJ_T0091800.1 MGP_CASTEiJ_G0033530.1 mouse_genomes_project 9 30530632 30591756 + MGP_CASTEiJ_P0091800 Ets1 protein_coding protein_coding MGP_CASTEiJ_T0091355.1 MGP_CASTEiJ_G0033363.1 mouse_genomes_project 9 11794293 11797970 - MGP_CASTEiJ_P0091355 Fut4 protein_coding protein_coding MGP_CASTEiJ_T0005316.1 MGP_CASTEiJ_G0004506.1 mouse_genomes_project 9 57292017 57310230 + Gm16130 antisense antisense MGP_CASTEiJ_T0094048.1 MGP_CASTEiJ_G0034175.1 mouse_genomes_project 9 101468511 101525579 - MGP_CASTEiJ_P0094048 Pccb protein_coding protein_coding MGP_CASTEiJ_T0094049.1 MGP_CASTEiJ_G0034175.1 mouse_genomes_project 9 101468511 101525600 - MGP_CASTEiJ_P0094049 Pccb protein_coding protein_coding MGP_CASTEiJ_T0094050.1 MGP_CASTEiJ_G0034175.1 mouse_genomes_project 9 101470799 101472064 - Pccb protein_coding retained_intron MGP_CASTEiJ_T0094051.1 MGP_CASTEiJ_G0034175.1 mouse_genomes_project 9 101484253 101525566 - MGP_CASTEiJ_P0094051 Pccb protein_coding protein_coding MGP_CASTEiJ_T0094052.1 MGP_CASTEiJ_G0034175.1 mouse_genomes_project 9 101501311 101525553 - Pccb protein_coding processed_transcript MGP_CASTEiJ_T0094053.1 MGP_CASTEiJ_G0034175.1 mouse_genomes_project 9 101512017 101525583 - MGP_CASTEiJ_P0094053 Pccb protein_coding protein_coding MGP_CASTEiJ_T0002277.1 MGP_CASTEiJ_G0002195.1 mouse_genomes_project 9 30299081 30302108 - TEC TEC MGP_CASTEiJ_T0005268.1 MGP_CASTEiJ_G0004476.1 mouse_genomes_project 9 4721187 4754369 - AV064505 antisense antisense MGP_CASTEiJ_T0101394.1 MGP_CASTEiJ_G0038307.1 mouse_genomes_project 9 77036576 77036696 - Gm22938 snoRNA snoRNA MGP_CASTEiJ_T0093900.1 MGP_CASTEiJ_G0034142.1 mouse_genomes_project 9 96960038 97032202 - MGP_CASTEiJ_P0093900 Zbtb38 protein_coding protein_coding MGP_CASTEiJ_T0093901.1 MGP_CASTEiJ_G0034142.1 mouse_genomes_project 9 96962690 97009995 - MGP_CASTEiJ_P0093901 Zbtb38 protein_coding protein_coding MGP_CASTEiJ_T0093902.1 MGP_CASTEiJ_G0034142.1 mouse_genomes_project 9 96963528 96998190 - MGP_CASTEiJ_P0093902 Zbtb38 protein_coding non_stop_decay MGP_CASTEiJ_T0093903.1 MGP_CASTEiJ_G0034142.1 mouse_genomes_project 9 96964668 96998640 - MGP_CASTEiJ_P0093903 Zbtb38 protein_coding protein_coding MGP_CASTEiJ_T0093904.1 MGP_CASTEiJ_G0034142.1 mouse_genomes_project 9 96965747 96997905 - MGP_CASTEiJ_P0093904 Zbtb38 protein_coding protein_coding MGP_CASTEiJ_T0093905.1 MGP_CASTEiJ_G0034142.1 mouse_genomes_project 9 96996569 97007358 - Zbtb38 protein_coding processed_transcript MGP_CASTEiJ_T0093906.1 MGP_CASTEiJ_G0034142.1 mouse_genomes_project 9 97008172 97032056 - Zbtb38 protein_coding retained_intron MGP_CASTEiJ_T0093907.1 MGP_CASTEiJ_G0034142.1 mouse_genomes_project 9 97008172 97009663 - Zbtb38 protein_coding processed_transcript MGP_CASTEiJ_T0093908.1 MGP_CASTEiJ_G0034142.1 mouse_genomes_project 9 97009780 97011095 - Zbtb38 protein_coding processed_transcript MGP_CASTEiJ_T0093909.1 MGP_CASTEiJ_G0034142.1 mouse_genomes_project 9 97009877 97010994 - Zbtb38 protein_coding retained_intron MGP_CASTEiJ_T0093910.1 MGP_CASTEiJ_G0034142.1 mouse_genomes_project 9 97026628 97032098 - Zbtb38 protein_coding retained_intron MGP_CASTEiJ_T0093911.1 MGP_CASTEiJ_G0034142.1 mouse_genomes_project 9 97026830 97032064 - Zbtb38 protein_coding processed_transcript MGP_CASTEiJ_T0091989.1 MGP_CASTEiJ_G0033604.1 mouse_genomes_project 9 36419635 36420568 + MGP_CASTEiJ_P0091989 Olfr904 protein_coding protein_coding MGP_CASTEiJ_T0017829.1 MGP_CASTEiJ_G0015074.1 mouse_genomes_project 9 109040809 109044321 + 4930447F24Rik processed_transcript antisense MGP_CASTEiJ_T0017830.1 MGP_CASTEiJ_G0015074.1 mouse_genomes_project 9 109043271 109044984 + 4930447F24Rik processed_transcript antisense MGP_CASTEiJ_T0017831.1 MGP_CASTEiJ_G0015074.1 mouse_genomes_project 9 109043744 109044132 + 4930447F24Rik processed_transcript retained_intron MGP_CASTEiJ_T0092049.1 MGP_CASTEiJ_G0033652.1 mouse_genomes_project 9 38012334 38013270 + MGP_CASTEiJ_P0092049 Olfr970 protein_coding protein_coding MGP_CASTEiJ_T0094722.1 MGP_CASTEiJ_G0034289.1 mouse_genomes_project 9 109323592 109341451 + MGP_CASTEiJ_P0094722 1700102P08Rik protein_coding protein_coding MGP_CASTEiJ_T0094723.1 MGP_CASTEiJ_G0034289.1 mouse_genomes_project 9 109323621 109328544 + MGP_CASTEiJ_P0094723 1700102P08Rik protein_coding protein_coding MGP_CASTEiJ_T0010757.1 MGP_CASTEiJ_G0008945.1 mouse_genomes_project 9 53715880 53715949 + Mir5710 miRNA miRNA MGP_CASTEiJ_T0005346.1 MGP_CASTEiJ_G0004527.1 mouse_genomes_project 9 87417818 87423566 + A330041J22Rik antisense antisense MGP_CASTEiJ_T0092372.1 MGP_CASTEiJ_G0033759.1 mouse_genomes_project 9 44878367 44897853 - MGP_CASTEiJ_P0092372 4931429L15Rik protein_coding protein_coding MGP_CASTEiJ_T0092373.1 MGP_CASTEiJ_G0033759.1 mouse_genomes_project 9 44880049 44888233 - MGP_CASTEiJ_P0092373 4931429L15Rik protein_coding protein_coding MGP_CASTEiJ_T0092374.1 MGP_CASTEiJ_G0033759.1 mouse_genomes_project 9 44886917 44892602 - MGP_CASTEiJ_P0092374 4931429L15Rik protein_coding protein_coding MGP_CASTEiJ_T0005326.1 MGP_CASTEiJ_G0004513.1 mouse_genomes_project 9 69298812 69313879 - Gm15511 antisense antisense MGP_CASTEiJ_T0094114.1 MGP_CASTEiJ_G0034191.1 mouse_genomes_project 9 103780426 103807001 - MGP_CASTEiJ_P0094114 Trf protein_coding protein_coding MGP_CASTEiJ_T0094115.1 MGP_CASTEiJ_G0034191.1 mouse_genomes_project 9 103785548 103807172 - MGP_CASTEiJ_P0094115 Trf protein_coding protein_coding MGP_CASTEiJ_T0094116.1 MGP_CASTEiJ_G0034191.1 mouse_genomes_project 9 103785778 103788744 - Trf protein_coding retained_intron MGP_CASTEiJ_T0094117.1 MGP_CASTEiJ_G0034191.1 mouse_genomes_project 9 103787319 103796607 - MGP_CASTEiJ_P0094117 Trf protein_coding protein_coding MGP_CASTEiJ_T0094118.1 MGP_CASTEiJ_G0034191.1 mouse_genomes_project 9 103787387 103798806 - MGP_CASTEiJ_P0094118 Trf protein_coding protein_coding MGP_CASTEiJ_T0094119.1 MGP_CASTEiJ_G0034191.1 mouse_genomes_project 9 103792551 103806998 - MGP_CASTEiJ_P0094119 Trf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094120.1 MGP_CASTEiJ_G0034191.1 mouse_genomes_project 9 103797635 103799419 - Trf protein_coding retained_intron MGP_CASTEiJ_T0094121.1 MGP_CASTEiJ_G0034191.1 mouse_genomes_project 9 103798839 103806994 - MGP_CASTEiJ_P0094121 Trf protein_coding protein_coding MGP_CASTEiJ_T0094122.1 MGP_CASTEiJ_G0034191.1 mouse_genomes_project 9 103799838 103805215 - MGP_CASTEiJ_P0094122 Trf protein_coding protein_coding MGP_CASTEiJ_T0010739.1 MGP_CASTEiJ_G0008927.1 mouse_genomes_project 9 25919834 25919931 + Gm44316 miRNA miRNA MGP_CASTEiJ_T0091709.1 MGP_CASTEiJ_G0033504.1 mouse_genomes_project 9 24330471 24373843 - MGP_CASTEiJ_P0091709 Glb1l2 protein_coding protein_coding MGP_CASTEiJ_T0091710.1 MGP_CASTEiJ_G0033504.1 mouse_genomes_project 9 24330472 24373879 - MGP_CASTEiJ_P0091710 Glb1l2 protein_coding protein_coding MGP_CASTEiJ_T0091711.1 MGP_CASTEiJ_G0033504.1 mouse_genomes_project 9 24331203 24373832 - MGP_CASTEiJ_P0091711 Glb1l2 protein_coding protein_coding MGP_CASTEiJ_T0091712.1 MGP_CASTEiJ_G0033504.1 mouse_genomes_project 9 24332638 24369995 - MGP_CASTEiJ_P0091712 Glb1l2 protein_coding protein_coding MGP_CASTEiJ_T0091713.1 MGP_CASTEiJ_G0033504.1 mouse_genomes_project 9 24334939 24335918 - Glb1l2 protein_coding retained_intron MGP_CASTEiJ_T0091714.1 MGP_CASTEiJ_G0033504.1 mouse_genomes_project 9 24341400 24359515 - Glb1l2 protein_coding retained_intron MGP_CASTEiJ_T0091715.1 MGP_CASTEiJ_G0033504.1 mouse_genomes_project 9 24348066 24373833 - MGP_CASTEiJ_P0091715 Glb1l2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092564.1 MGP_CASTEiJ_G0033822.1 mouse_genomes_project 9 52827864 52831453 + MGP_CASTEiJ_P0092564 Sln protein_coding protein_coding MGP_CASTEiJ_T0017793.1 MGP_CASTEiJ_G0015060.1 mouse_genomes_project 9 75027211 75032061 + Gm16551 processed_transcript lincRNA MGP_CASTEiJ_T0017794.1 MGP_CASTEiJ_G0015060.1 mouse_genomes_project 9 75027627 75041392 + Gm16551 processed_transcript lincRNA MGP_CASTEiJ_T0017795.1 MGP_CASTEiJ_G0015060.1 mouse_genomes_project 9 75027693 75028558 + Gm16551 processed_transcript retained_intron MGP_CASTEiJ_T0017796.1 MGP_CASTEiJ_G0015060.1 mouse_genomes_project 9 75027716 75032060 + Gm16551 processed_transcript lincRNA MGP_CASTEiJ_T0017797.1 MGP_CASTEiJ_G0015060.1 mouse_genomes_project 9 75028185 75030390 + Gm16551 processed_transcript retained_intron MGP_CASTEiJ_T0092793.1 MGP_CASTEiJ_G0033892.1 mouse_genomes_project 9 57528133 57538741 + MGP_CASTEiJ_P0092793 Stoml1 protein_coding protein_coding MGP_CASTEiJ_T0093824.1 MGP_CASTEiJ_G0034128.1 mouse_genomes_project 9 94837907 95409920 + MGP_CASTEiJ_P0093824 Slc9a9 protein_coding protein_coding MGP_CASTEiJ_T0093825.1 MGP_CASTEiJ_G0034128.1 mouse_genomes_project 9 94837930 94887434 + Slc9a9 protein_coding processed_transcript MGP_CASTEiJ_T0093826.1 MGP_CASTEiJ_G0034128.1 mouse_genomes_project 9 95100350 95409927 + MGP_CASTEiJ_P0093826 Slc9a9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093827.1 MGP_CASTEiJ_G0034128.1 mouse_genomes_project 9 95294897 95297736 + Slc9a9 protein_coding retained_intron MGP_CASTEiJ_T0009036.1 MGP_CASTEiJ_G0007277.1 mouse_genomes_project 9 73373982 73446903 + Gm27211 lincRNA lincRNA MGP_CASTEiJ_T0009053.1 MGP_CASTEiJ_G0007291.1 mouse_genomes_project 9 84288189 84289914 + Gm2109 lincRNA lincRNA MGP_CASTEiJ_T0009013.1 MGP_CASTEiJ_G0007259.1 mouse_genomes_project 9 56349721 56362129 + 1700041C23Rik lincRNA lincRNA MGP_CASTEiJ_T0093371.1 MGP_CASTEiJ_G0034028.1 mouse_genomes_project 9 73177157 73213801 - MGP_CASTEiJ_P0093371 Pigb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093372.1 MGP_CASTEiJ_G0034028.1 mouse_genomes_project 9 73179594 73186778 - MGP_CASTEiJ_P0093372 Pigb protein_coding protein_coding MGP_CASTEiJ_T0093374.1 MGP_CASTEiJ_G0034028.1 mouse_genomes_project 9 73184826 73213123 - MGP_CASTEiJ_P0093374 Pigb protein_coding protein_coding MGP_CASTEiJ_T0093375.1 MGP_CASTEiJ_G0034028.1 mouse_genomes_project 9 73185779 73213075 - MGP_CASTEiJ_P0093375 Pigb protein_coding protein_coding MGP_CASTEiJ_T0093377.1 MGP_CASTEiJ_G0034028.1 mouse_genomes_project 9 73186816 73213123 - MGP_CASTEiJ_P0093377 Pigb protein_coding protein_coding MGP_CASTEiJ_T0093378.1 MGP_CASTEiJ_G0034028.1 mouse_genomes_project 9 73188721 73190317 - Pigb protein_coding retained_intron MGP_CASTEiJ_T0093379.1 MGP_CASTEiJ_G0034028.1 mouse_genomes_project 9 73193484 73209226 - MGP_CASTEiJ_P0093379 Pigb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093380.1 MGP_CASTEiJ_G0034028.1 mouse_genomes_project 9 73202656 73205696 - Pigb protein_coding retained_intron MGP_CASTEiJ_T0093381.1 MGP_CASTEiJ_G0034028.1 mouse_genomes_project 9 73206378 73208124 - Pigb protein_coding retained_intron MGP_CASTEiJ_T0092039.1 MGP_CASTEiJ_G0033642.1 mouse_genomes_project 9 37786493 37787510 + MGP_CASTEiJ_P0092039 Olfr148 protein_coding protein_coding MGP_CASTEiJ_T0002276.1 MGP_CASTEiJ_G0002194.1 mouse_genomes_project 9 27743782 27783646 - TEC TEC MGP_CASTEiJ_T0092403.1 MGP_CASTEiJ_G0033770.1 mouse_genomes_project 9 47646706 47658457 - MGP_CASTEiJ_P0092403 Htr3a protein_coding unknown_likely_coding MGP_CASTEiJ_T0092404.1 MGP_CASTEiJ_G0033770.1 mouse_genomes_project 9 47646713 47658591 - MGP_CASTEiJ_P0092404 Htr3a protein_coding protein_coding MGP_CASTEiJ_T0101395.1 MGP_CASTEiJ_G0038308.1 mouse_genomes_project 9 78398679 78398806 - Gm23609 snoRNA snoRNA MGP_CASTEiJ_T0092906.1 MGP_CASTEiJ_G0033919.1 mouse_genomes_project 9 61396518 61399149 - MGP_CASTEiJ_P0092906 Rplp1 protein_coding protein_coding MGP_CASTEiJ_T0008995.1 MGP_CASTEiJ_G0007244.1 mouse_genomes_project 9 34147320 34147874 - lincRNA lincRNA MGP_CASTEiJ_T0092729.1 MGP_CASTEiJ_G0033881.1 mouse_genomes_project 9 56949179 56992974 + MGP_CASTEiJ_P0092729 Edc3 protein_coding protein_coding MGP_CASTEiJ_T0092730.1 MGP_CASTEiJ_G0033881.1 mouse_genomes_project 9 56949194 56991878 + MGP_CASTEiJ_P0092730 Edc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092731.1 MGP_CASTEiJ_G0033881.1 mouse_genomes_project 9 56949206 56956598 + MGP_CASTEiJ_P0092731 Edc3 protein_coding protein_coding MGP_CASTEiJ_T0093027.1 MGP_CASTEiJ_G0033951.1 mouse_genomes_project 9 64682483 64722060 - MGP_CASTEiJ_P0093027 Hacd3 protein_coding protein_coding MGP_CASTEiJ_T0101409.1 MGP_CASTEiJ_G0038322.1 mouse_genomes_project 9 103581937 103582067 - Gm22595 snoRNA snoRNA MGP_CASTEiJ_T0093232.1 MGP_CASTEiJ_G0034002.1 mouse_genomes_project 9 70226338 70424335 + MGP_CASTEiJ_P0093232 Myo1e protein_coding protein_coding MGP_CASTEiJ_T0093233.1 MGP_CASTEiJ_G0034002.1 mouse_genomes_project 9 70315646 70423283 + MGP_CASTEiJ_P0093233 Myo1e protein_coding unknown_likely_coding MGP_CASTEiJ_T0091596.1 MGP_CASTEiJ_G0033458.1 mouse_genomes_project 9 18883279 18886106 - MGP_CASTEiJ_P0091596 Tmed1 protein_coding protein_coding MGP_CASTEiJ_T0091437.1 MGP_CASTEiJ_G0033387.1 mouse_genomes_project 9 15652080 15660054 + MGP_CASTEiJ_P0091437 Mbd3l1 protein_coding protein_coding MGP_CASTEiJ_T0091979.1 MGP_CASTEiJ_G0033594.1 mouse_genomes_project 9 36182325 36183274 + MGP_CASTEiJ_P0091979 Olfr894 protein_coding protein_coding MGP_CASTEiJ_T0094161.1 MGP_CASTEiJ_G0034200.1 mouse_genomes_project 9 104703480 104772131 + MGP_CASTEiJ_P0094161 Acad11 protein_coding protein_coding MGP_CASTEiJ_T0094162.1 MGP_CASTEiJ_G0034200.1 mouse_genomes_project 9 104703777 104772324 + MGP_CASTEiJ_P0094162 Acad11 protein_coding protein_coding MGP_CASTEiJ_T0094163.1 MGP_CASTEiJ_G0034200.1 mouse_genomes_project 9 104703813 104705782 + Acad11 protein_coding retained_intron MGP_CASTEiJ_T0094165.1 MGP_CASTEiJ_G0034200.1 mouse_genomes_project 9 104732047 104755466 + Acad11 protein_coding processed_transcript MGP_CASTEiJ_T0094166.1 MGP_CASTEiJ_G0034200.1 mouse_genomes_project 9 104736476 104749985 + MGP_CASTEiJ_P0094166 Acad11 protein_coding protein_coding MGP_CASTEiJ_T0094169.1 MGP_CASTEiJ_G0034200.1 mouse_genomes_project 9 104752345 104755804 + Acad11 protein_coding retained_intron MGP_CASTEiJ_T0094170.1 MGP_CASTEiJ_G0034200.1 mouse_genomes_project 9 104768480 104771687 + Acad11 protein_coding processed_transcript MGP_CASTEiJ_T0091431.1 MGP_CASTEiJ_G0033385.1 mouse_genomes_project 9 15610216 15613063 + MGP_CASTEiJ_P0091431 Mbd3l2 protein_coding protein_coding MGP_CASTEiJ_T0101422.1 MGP_CASTEiJ_G0038335.1 mouse_genomes_project 9 125094824 125094962 + Gm23323 snoRNA snoRNA MGP_CASTEiJ_T0005366.1 MGP_CASTEiJ_G0004539.1 mouse_genomes_project 9 98346619 98355360 + 4921534H16Rik antisense antisense MGP_CASTEiJ_T0005367.1 MGP_CASTEiJ_G0004539.1 mouse_genomes_project 9 98346619 98348966 + 4921534H16Rik antisense antisense MGP_CASTEiJ_T0093717.1 MGP_CASTEiJ_G0034106.1 mouse_genomes_project 9 89069979 89144147 - MGP_CASTEiJ_P0093717 Snx14 protein_coding protein_coding MGP_CASTEiJ_T0093718.1 MGP_CASTEiJ_G0034106.1 mouse_genomes_project 9 89069981 89096118 - Snx14 protein_coding retained_intron MGP_CASTEiJ_T0093719.1 MGP_CASTEiJ_G0034106.1 mouse_genomes_project 9 89069981 89144094 - MGP_CASTEiJ_P0093719 Snx14 protein_coding protein_coding MGP_CASTEiJ_T0093720.1 MGP_CASTEiJ_G0034106.1 mouse_genomes_project 9 89069993 89144154 - MGP_CASTEiJ_P0093720 Snx14 protein_coding protein_coding MGP_CASTEiJ_T0093721.1 MGP_CASTEiJ_G0034106.1 mouse_genomes_project 9 89069996 89144110 - MGP_CASTEiJ_P0093721 Snx14 protein_coding protein_coding MGP_CASTEiJ_T0093722.1 MGP_CASTEiJ_G0034106.1 mouse_genomes_project 9 89075778 89144125 - MGP_CASTEiJ_P0093722 Snx14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093723.1 MGP_CASTEiJ_G0034106.1 mouse_genomes_project 9 89085853 89091919 - Snx14 protein_coding retained_intron MGP_CASTEiJ_T0093725.1 MGP_CASTEiJ_G0034106.1 mouse_genomes_project 9 89123380 89144108 - Snx14 protein_coding retained_intron MGP_CASTEiJ_T0002288.1 MGP_CASTEiJ_G0002206.1 mouse_genomes_project 9 55517733 55519767 - TEC TEC MGP_CASTEiJ_T0091245.1 MGP_CASTEiJ_G0033328.1 mouse_genomes_project 9 4211769 4232443 + MGP_CASTEiJ_P0091245 Dcun1d5 protein_coding protein_coding MGP_CASTEiJ_T0010742.1 MGP_CASTEiJ_G0008930.1 mouse_genomes_project 9 37100001 37100085 + Gm25032 miRNA miRNA MGP_CASTEiJ_T0100144.1 MGP_CASTEiJ_G0037057.1 mouse_genomes_project 9 73139190 73139297 + Gm23567 snRNA snRNA MGP_CASTEiJ_T0091440.1 MGP_CASTEiJ_G0033389.1 mouse_genomes_project 9 15958331 15959385 - MGP_CASTEiJ_P0091440 Olfr24 protein_coding protein_coding MGP_CASTEiJ_T0094966.1 MGP_CASTEiJ_G0034327.1 mouse_genomes_project 9 110830782 110841828 + MGP_CASTEiJ_P0094966 Nme6 protein_coding protein_coding MGP_CASTEiJ_T0094967.1 MGP_CASTEiJ_G0034327.1 mouse_genomes_project 9 110830791 110842273 + MGP_CASTEiJ_P0094967 Nme6 protein_coding protein_coding MGP_CASTEiJ_T0094968.1 MGP_CASTEiJ_G0034327.1 mouse_genomes_project 9 110830804 110831623 + Nme6 protein_coding retained_intron MGP_CASTEiJ_T0094969.1 MGP_CASTEiJ_G0034327.1 mouse_genomes_project 9 110830804 110842174 + Nme6 protein_coding processed_transcript MGP_CASTEiJ_T0094970.1 MGP_CASTEiJ_G0034327.1 mouse_genomes_project 9 110830814 110841337 + MGP_CASTEiJ_P0094970 Nme6 protein_coding protein_coding MGP_CASTEiJ_T0094971.1 MGP_CASTEiJ_G0034327.1 mouse_genomes_project 9 110830819 110841958 + Nme6 protein_coding processed_transcript MGP_CASTEiJ_T0094972.1 MGP_CASTEiJ_G0034327.1 mouse_genomes_project 9 110830820 110842255 + Nme6 protein_coding processed_transcript MGP_CASTEiJ_T0094973.1 MGP_CASTEiJ_G0034327.1 mouse_genomes_project 9 110830840 110833759 + Nme6 protein_coding retained_intron MGP_CASTEiJ_T0094974.1 MGP_CASTEiJ_G0034327.1 mouse_genomes_project 9 110830919 110841885 + MGP_CASTEiJ_P0094974 Nme6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094975.1 MGP_CASTEiJ_G0034327.1 mouse_genomes_project 9 110831063 110842023 + MGP_CASTEiJ_P0094975 Nme6 protein_coding protein_coding MGP_CASTEiJ_T0094976.1 MGP_CASTEiJ_G0034327.1 mouse_genomes_project 9 110831075 110841960 + MGP_CASTEiJ_P0094976 Nme6 protein_coding protein_coding MGP_CASTEiJ_T0094977.1 MGP_CASTEiJ_G0034327.1 mouse_genomes_project 9 110831080 110841879 + Nme6 protein_coding processed_transcript MGP_CASTEiJ_T0094978.1 MGP_CASTEiJ_G0034327.1 mouse_genomes_project 9 110831224 110840924 + Nme6 protein_coding retained_intron MGP_CASTEiJ_T0094979.1 MGP_CASTEiJ_G0034327.1 mouse_genomes_project 9 110831226 110841846 + Nme6 protein_coding processed_transcript MGP_CASTEiJ_T0094980.1 MGP_CASTEiJ_G0034327.1 mouse_genomes_project 9 110831324 110842415 + Nme6 protein_coding processed_transcript MGP_CASTEiJ_T0093357.1 MGP_CASTEiJ_G0034024.1 mouse_genomes_project 9 73125790 73142441 + MGP_CASTEiJ_P0093357 protein_coding protein_coding MGP_CASTEiJ_T0093358.1 MGP_CASTEiJ_G0034024.1 mouse_genomes_project 9 73125790 73142444 + MGP_CASTEiJ_P0093358 protein_coding protein_coding MGP_CASTEiJ_T0009121.1 MGP_CASTEiJ_G0007344.1 mouse_genomes_project 9 124481268 124584426 + 9530059O14Rik lincRNA lincRNA MGP_CASTEiJ_T0009122.1 MGP_CASTEiJ_G0007344.1 mouse_genomes_project 9 124481272 124488853 + 9530059O14Rik lincRNA lincRNA MGP_CASTEiJ_T0009123.1 MGP_CASTEiJ_G0007344.1 mouse_genomes_project 9 124481273 124585056 + 9530059O14Rik lincRNA lincRNA MGP_CASTEiJ_T0094415.1 MGP_CASTEiJ_G0034244.1 mouse_genomes_project 9 108177477 108188664 - MGP_CASTEiJ_P0094415 Hemk1 protein_coding protein_coding MGP_CASTEiJ_T0094416.1 MGP_CASTEiJ_G0034244.1 mouse_genomes_project 9 108178074 108188632 - Hemk1 protein_coding retained_intron MGP_CASTEiJ_T0094417.1 MGP_CASTEiJ_G0034244.1 mouse_genomes_project 9 108178092 108186976 - Hemk1 protein_coding processed_transcript MGP_CASTEiJ_T0094418.1 MGP_CASTEiJ_G0034244.1 mouse_genomes_project 9 108178094 108179828 - Hemk1 protein_coding retained_intron MGP_CASTEiJ_T0094419.1 MGP_CASTEiJ_G0034244.1 mouse_genomes_project 9 108178361 108188647 - MGP_CASTEiJ_P0094419 Hemk1 protein_coding protein_coding MGP_CASTEiJ_T0094420.1 MGP_CASTEiJ_G0034244.1 mouse_genomes_project 9 108179735 108181103 - Hemk1 protein_coding retained_intron MGP_CASTEiJ_T0094421.1 MGP_CASTEiJ_G0034244.1 mouse_genomes_project 9 108185457 108188616 - Hemk1 protein_coding retained_intron MGP_CASTEiJ_T0010785.1 MGP_CASTEiJ_G0008973.1 mouse_genomes_project 9 109513427 109513512 + Mir425 miRNA miRNA MGP_CASTEiJ_T0093024.1 MGP_CASTEiJ_G0033949.1 mouse_genomes_project 9 64612290 64640816 - MGP_CASTEiJ_P0093024 Slc24a1 protein_coding protein_coding MGP_CASTEiJ_T0091495.1 MGP_CASTEiJ_G0033425.1 mouse_genomes_project 9 17884311 17899192 + MGP_CASTEiJ_P0091495 Zfp846 protein_coding protein_coding MGP_CASTEiJ_T0091496.1 MGP_CASTEiJ_G0033425.1 mouse_genomes_project 9 17884511 17899194 + MGP_CASTEiJ_P0091496 Zfp846 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091497.1 MGP_CASTEiJ_G0033425.1 mouse_genomes_project 9 17890773 17898471 + MGP_CASTEiJ_P0091497 Zfp846 protein_coding protein_coding MGP_CASTEiJ_T0091634.1 MGP_CASTEiJ_G0033473.1 mouse_genomes_project 9 19361002 19366866 + MGP_CASTEiJ_P0091634 Swsap1 protein_coding protein_coding MGP_CASTEiJ_T0092644.1 MGP_CASTEiJ_G0033850.1 mouse_genomes_project 9 55124498 55144726 + MGP_CASTEiJ_P0092644 Rcn2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092645.1 MGP_CASTEiJ_G0033850.1 mouse_genomes_project 9 55124510 55141941 + MGP_CASTEiJ_P0092645 Rcn2 protein_coding protein_coding MGP_CASTEiJ_T0092646.1 MGP_CASTEiJ_G0033850.1 mouse_genomes_project 9 55124523 55126883 + Rcn2 protein_coding retained_intron MGP_CASTEiJ_T0092647.1 MGP_CASTEiJ_G0033850.1 mouse_genomes_project 9 55124538 55136041 + Rcn2 protein_coding retained_intron MGP_CASTEiJ_T0101676.1 MGP_CASTEiJ_G0038506.1 mouse_genomes_project 9 108139070 108139950 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101677.1 MGP_CASTEiJ_G0038506.1 mouse_genomes_project 9 108139636 108143794 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0015478.1 MGP_CASTEiJ_G0013641.1 mouse_genomes_project 9 81436548 81437621 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092419.1 MGP_CASTEiJ_G0033779.1 mouse_genomes_project 9 48277812 48593666 - MGP_CASTEiJ_P0092419 Ncam1 protein_coding protein_coding MGP_CASTEiJ_T0092420.1 MGP_CASTEiJ_G0033779.1 mouse_genomes_project 9 48277825 48348285 - MGP_CASTEiJ_P0092420 Ncam1 protein_coding protein_coding MGP_CASTEiJ_T0092421.1 MGP_CASTEiJ_G0033779.1 mouse_genomes_project 9 48280716 48593613 - MGP_CASTEiJ_P0092421 Ncam1 protein_coding protein_coding MGP_CASTEiJ_T0092422.1 MGP_CASTEiJ_G0033779.1 mouse_genomes_project 9 48294378 48593631 - MGP_CASTEiJ_P0092422 Ncam1 protein_coding protein_coding MGP_CASTEiJ_T0092424.1 MGP_CASTEiJ_G0033779.1 mouse_genomes_project 9 48300557 48323062 - MGP_CASTEiJ_P0092424 Ncam1 protein_coding protein_coding MGP_CASTEiJ_T0092425.1 MGP_CASTEiJ_G0033779.1 mouse_genomes_project 9 48308260 48593499 - MGP_CASTEiJ_P0092425 Ncam1 protein_coding protein_coding MGP_CASTEiJ_T0091757.1 MGP_CASTEiJ_G0033518.1 mouse_genomes_project 9 28674145 28695205 + MGP_CASTEiJ_P0091757 Adamts8 protein_coding protein_coding MGP_CASTEiJ_T0091758.1 MGP_CASTEiJ_G0033518.1 mouse_genomes_project 9 28675041 28696192 + MGP_CASTEiJ_P0091758 Adamts8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092064.1 MGP_CASTEiJ_G0033667.1 mouse_genomes_project 9 38326544 38329317 + MGP_CASTEiJ_P0092064 Tmem225 protein_coding protein_coding MGP_CASTEiJ_T0015423.1 MGP_CASTEiJ_G0013586.1 mouse_genomes_project 9 29030386 29030764 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002339.1 MGP_CASTEiJ_G0002256.1 mouse_genomes_project 9 91486765 91487655 - TEC TEC MGP_CASTEiJ_T0095409.1 MGP_CASTEiJ_G0034423.1 mouse_genomes_project 9 122120274 122314662 + MGP_CASTEiJ_P0095409 Myrip protein_coding protein_coding MGP_CASTEiJ_T0095410.1 MGP_CASTEiJ_G0034423.1 mouse_genomes_project 9 122221843 122260944 + MGP_CASTEiJ_P0095410 Myrip protein_coding protein_coding MGP_CASTEiJ_T0095411.1 MGP_CASTEiJ_G0034423.1 mouse_genomes_project 9 122246464 122253581 + Myrip protein_coding processed_transcript MGP_CASTEiJ_T0095412.1 MGP_CASTEiJ_G0034423.1 mouse_genomes_project 9 122263707 122268822 + Myrip protein_coding processed_transcript MGP_CASTEiJ_T0015456.1 MGP_CASTEiJ_G0013619.1 mouse_genomes_project 9 72677158 72677366 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005411.1 MGP_CASTEiJ_G0004576.1 mouse_genomes_project 9 120561603 120598794 - Gm2415 antisense antisense MGP_CASTEiJ_T0005412.1 MGP_CASTEiJ_G0004576.1 mouse_genomes_project 9 120561686 120598804 - Gm2415 antisense antisense MGP_CASTEiJ_T0005413.1 MGP_CASTEiJ_G0004576.1 mouse_genomes_project 9 120575473 120598793 - Gm2415 antisense antisense MGP_CASTEiJ_T0005414.1 MGP_CASTEiJ_G0004576.1 mouse_genomes_project 9 120596988 120598990 - Gm2415 antisense antisense MGP_CASTEiJ_T0091755.1 MGP_CASTEiJ_G0033517.1 mouse_genomes_project 9 28623951 28650395 - MGP_CASTEiJ_P0091755 Adamts15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091756.1 MGP_CASTEiJ_G0033517.1 mouse_genomes_project 9 28623952 28650339 - MGP_CASTEiJ_P0091756 Adamts15 protein_coding protein_coding MGP_CASTEiJ_T0091532.1 MGP_CASTEiJ_G0033434.1 mouse_genomes_project 9 18212681 18216468 + MGP_CASTEiJ_P0091532 Ppan protein_coding protein_coding MGP_CASTEiJ_T0091533.1 MGP_CASTEiJ_G0033434.1 mouse_genomes_project 9 18212756 18214627 + Ppan protein_coding retained_intron MGP_CASTEiJ_T0091534.1 MGP_CASTEiJ_G0033434.1 mouse_genomes_project 9 18212773 18213972 + Ppan protein_coding retained_intron MGP_CASTEiJ_T0091535.1 MGP_CASTEiJ_G0033434.1 mouse_genomes_project 9 18212791 18216468 + Ppan protein_coding retained_intron MGP_CASTEiJ_T0091536.1 MGP_CASTEiJ_G0033434.1 mouse_genomes_project 9 18214929 18215646 + Ppan protein_coding retained_intron MGP_CASTEiJ_T0091537.1 MGP_CASTEiJ_G0033434.1 mouse_genomes_project 9 18215498 18215974 + Ppan protein_coding retained_intron MGP_CASTEiJ_T0093234.1 MGP_CASTEiJ_G0034003.1 mouse_genomes_project 9 70433192 70450568 - MGP_CASTEiJ_P0093234 Ccnb2 protein_coding protein_coding MGP_CASTEiJ_T0093235.1 MGP_CASTEiJ_G0034003.1 mouse_genomes_project 9 70433289 70450536 - MGP_CASTEiJ_P0093235 Ccnb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0015467.1 MGP_CASTEiJ_G0013630.1 mouse_genomes_project 9 76964077 76964453 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009043.1 MGP_CASTEiJ_G0007283.1 mouse_genomes_project 9 77715261 77753976 - 5730403I07Rik lincRNA lincRNA MGP_CASTEiJ_T0091963.1 MGP_CASTEiJ_G0033579.1 mouse_genomes_project 9 35729554 35765143 + MGP_CASTEiJ_P0091963 protein_coding protein_coding MGP_CASTEiJ_T0091457.1 MGP_CASTEiJ_G0033406.1 mouse_genomes_project 9 16790362 16791354 + MGP_CASTEiJ_P0091457 Olfr855 protein_coding protein_coding MGP_CASTEiJ_T0091754.1 MGP_CASTEiJ_G0033516.1 mouse_genomes_project 9 28149468 28189650 + MGP_CASTEiJ_P0091754 Snx19 protein_coding protein_coding MGP_CASTEiJ_T0092195.1 MGP_CASTEiJ_G0033705.1 mouse_genomes_project 9 42757917 42770434 - MGP_CASTEiJ_P0092195 C2cd2l protein_coding protein_coding MGP_CASTEiJ_T0092724.1 MGP_CASTEiJ_G0033877.1 mouse_genomes_project 9 56830087 56846185 - MGP_CASTEiJ_P0092724 Lman1l protein_coding protein_coding MGP_CASTEiJ_T0092725.1 MGP_CASTEiJ_G0033877.1 mouse_genomes_project 9 56830087 56846185 - MGP_CASTEiJ_P0092725 Lman1l protein_coding protein_coding MGP_CASTEiJ_T0091442.1 MGP_CASTEiJ_G0033391.1 mouse_genomes_project 9 16062888 16063854 + MGP_CASTEiJ_P0091442 Olfr829 protein_coding protein_coding MGP_CASTEiJ_T0002377.1 MGP_CASTEiJ_G0002294.1 mouse_genomes_project 9 106481327 106481953 + TEC TEC MGP_CASTEiJ_T0100104.1 MGP_CASTEiJ_G0037017.1 mouse_genomes_project 9 6316184 6316246 + Gm22815 snRNA snRNA MGP_CASTEiJ_T0094306.1 MGP_CASTEiJ_G0034224.1 mouse_genomes_project 9 107251048 107258532 - MGP_CASTEiJ_P0094306 Abhd14a protein_coding protein_coding MGP_CASTEiJ_T0094307.1 MGP_CASTEiJ_G0034224.1 mouse_genomes_project 9 107251051 107258532 - MGP_CASTEiJ_P0094307 Abhd14a protein_coding protein_coding MGP_CASTEiJ_T0094308.1 MGP_CASTEiJ_G0034224.1 mouse_genomes_project 9 107251053 107258490 - MGP_CASTEiJ_P0094308 Abhd14a protein_coding protein_coding MGP_CASTEiJ_T0094309.1 MGP_CASTEiJ_G0034224.1 mouse_genomes_project 9 107251107 107258297 - MGP_CASTEiJ_P0094309 Abhd14a protein_coding protein_coding MGP_CASTEiJ_T0094310.1 MGP_CASTEiJ_G0034224.1 mouse_genomes_project 9 107251379 107255833 - MGP_CASTEiJ_P0094310 Abhd14a protein_coding protein_coding MGP_CASTEiJ_T0094311.1 MGP_CASTEiJ_G0034224.1 mouse_genomes_project 9 107251721 107258474 - MGP_CASTEiJ_P0094311 Abhd14a protein_coding protein_coding MGP_CASTEiJ_T0094312.1 MGP_CASTEiJ_G0034224.1 mouse_genomes_project 9 107254402 107255127 - Abhd14a protein_coding retained_intron MGP_CASTEiJ_T0094313.1 MGP_CASTEiJ_G0034224.1 mouse_genomes_project 9 107254625 107258371 - MGP_CASTEiJ_P0094313 Abhd14a protein_coding protein_coding MGP_CASTEiJ_T0095267.1 MGP_CASTEiJ_G0034379.1 mouse_genomes_project 9 115888102 115888831 + MGP_CASTEiJ_P0095267 C130032M10Rik protein_coding protein_coding MGP_CASTEiJ_T0005328.1 MGP_CASTEiJ_G0004515.1 mouse_genomes_project 9 72470490 72520757 - BC065403 antisense antisense MGP_CASTEiJ_T0005329.1 MGP_CASTEiJ_G0004515.1 mouse_genomes_project 9 72519456 72520679 - BC065403 antisense antisense MGP_CASTEiJ_T0100111.1 MGP_CASTEiJ_G0037024.1 mouse_genomes_project 9 17772105 17772222 + Gm23316 snRNA snRNA MGP_CASTEiJ_T0092428.1 MGP_CASTEiJ_G0033782.1 mouse_genomes_project 9 49346789 49354142 - MGP_CASTEiJ_P0092428 Pts protein_coding protein_coding MGP_CASTEiJ_T0093103.1 MGP_CASTEiJ_G0033975.1 mouse_genomes_project 9 65854657 65859179 - MGP_CASTEiJ_P0093103 Snx22 protein_coding protein_coding MGP_CASTEiJ_T0093828.1 MGP_CASTEiJ_G0034129.1 mouse_genomes_project 9 95571451 95577988 - MGP_CASTEiJ_P0093828 Chst2 protein_coding protein_coding MGP_CASTEiJ_T0015485.1 MGP_CASTEiJ_G0013648.1 mouse_genomes_project 9 84574570 84575587 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099027.1 MGP_CASTEiJ_G0035945.1 mouse_genomes_project 9 89146702 89148851 - Gm28229 sense_intronic sense_intronic MGP_CASTEiJ_T0010790.1 MGP_CASTEiJ_G0008978.1 mouse_genomes_project 9 111698769 111698886 - Mir8107 miRNA miRNA MGP_CASTEiJ_T0005403.1 MGP_CASTEiJ_G0004568.1 mouse_genomes_project 9 111005065 111007932 - Gm43732 antisense antisense MGP_CASTEiJ_T0091641.1 MGP_CASTEiJ_G0033478.1 mouse_genomes_project 9 19425259 19464974 - MGP_CASTEiJ_P0091641 Elavl3 protein_coding protein_coding MGP_CASTEiJ_T0091642.1 MGP_CASTEiJ_G0033478.1 mouse_genomes_project 9 19433138 19446149 - MGP_CASTEiJ_P0091642 Elavl3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095092.1 MGP_CASTEiJ_G0034342.1 mouse_genomes_project 9 111687465 111716962 - MGP_CASTEiJ_P0095092 Nbeal2 protein_coding protein_coding MGP_CASTEiJ_T0095093.1 MGP_CASTEiJ_G0034342.1 mouse_genomes_project 9 111687465 111716962 - MGP_CASTEiJ_P0095093 Nbeal2 protein_coding protein_coding MGP_CASTEiJ_T0095094.1 MGP_CASTEiJ_G0034342.1 mouse_genomes_project 9 111687548 111716943 - MGP_CASTEiJ_P0095094 Nbeal2 protein_coding protein_coding MGP_CASTEiJ_T0095095.1 MGP_CASTEiJ_G0034342.1 mouse_genomes_project 9 111687719 111694821 - MGP_CASTEiJ_P0095095 Nbeal2 protein_coding protein_coding MGP_CASTEiJ_T0095096.1 MGP_CASTEiJ_G0034342.1 mouse_genomes_project 9 111687719 111701385 - MGP_CASTEiJ_P0095096 Nbeal2 protein_coding protein_coding MGP_CASTEiJ_T0095097.1 MGP_CASTEiJ_G0034342.1 mouse_genomes_project 9 111690913 111691556 - Nbeal2 protein_coding retained_intron MGP_CASTEiJ_T0095098.1 MGP_CASTEiJ_G0034342.1 mouse_genomes_project 9 111691585 111692346 - Nbeal2 protein_coding retained_intron MGP_CASTEiJ_T0095099.1 MGP_CASTEiJ_G0034342.1 mouse_genomes_project 9 111692247 111697219 - MGP_CASTEiJ_P0095099 Nbeal2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095100.1 MGP_CASTEiJ_G0034342.1 mouse_genomes_project 9 111693741 111694650 - Nbeal2 protein_coding retained_intron MGP_CASTEiJ_T0095101.1 MGP_CASTEiJ_G0034342.1 mouse_genomes_project 9 111697385 111697853 - Nbeal2 protein_coding retained_intron MGP_CASTEiJ_T0095102.1 MGP_CASTEiJ_G0034342.1 mouse_genomes_project 9 111701085 111708143 - MGP_CASTEiJ_P0095102 Nbeal2 protein_coding protein_coding MGP_CASTEiJ_T0002289.1 MGP_CASTEiJ_G0002207.1 mouse_genomes_project 9 57852466 57853497 + TEC TEC MGP_CASTEiJ_T0092401.1 MGP_CASTEiJ_G0033769.1 mouse_genomes_project 9 47382876 47576120 - MGP_CASTEiJ_P0092401 Zbtb16 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092402.1 MGP_CASTEiJ_G0033769.1 mouse_genomes_project 9 47544624 47575974 - MGP_CASTEiJ_P0092402 Zbtb16 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100118.1 MGP_CASTEiJ_G0037031.1 mouse_genomes_project 9 42318778 42318883 - Gm23326 snRNA snRNA MGP_CASTEiJ_T0091347.1 MGP_CASTEiJ_G0033361.1 mouse_genomes_project 9 11577205 11645315 - MGP_CASTEiJ_P0091347 Amotl1 protein_coding protein_coding MGP_CASTEiJ_T0091348.1 MGP_CASTEiJ_G0033361.1 mouse_genomes_project 9 11585156 11588534 - Amotl1 protein_coding retained_intron MGP_CASTEiJ_T0091349.1 MGP_CASTEiJ_G0033361.1 mouse_genomes_project 9 11622413 11646015 - MGP_CASTEiJ_P0091349 Amotl1 protein_coding protein_coding MGP_CASTEiJ_T0091350.1 MGP_CASTEiJ_G0033361.1 mouse_genomes_project 9 11622447 11645119 - MGP_CASTEiJ_P0091350 Amotl1 protein_coding protein_coding MGP_CASTEiJ_T0010782.1 MGP_CASTEiJ_G0008970.1 mouse_genomes_project 9 109008774 109008892 - miRNA miRNA MGP_CASTEiJ_T0009038.1 MGP_CASTEiJ_G0007279.1 mouse_genomes_project 9 75027653 75074459 + Gm20649 lincRNA lincRNA MGP_CASTEiJ_T0095418.1 MGP_CASTEiJ_G0034428.1 mouse_genomes_project 9 122818800 122840149 + MGP_CASTEiJ_P0095418 Ctnnb1 protein_coding protein_coding MGP_CASTEiJ_T0095419.1 MGP_CASTEiJ_G0034428.1 mouse_genomes_project 9 122822940 122850026 + MGP_CASTEiJ_P0095419 Ctnnb1 protein_coding protein_coding MGP_CASTEiJ_T0095420.1 MGP_CASTEiJ_G0034428.1 mouse_genomes_project 9 122823015 122850025 + MGP_CASTEiJ_P0095420 Ctnnb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095421.1 MGP_CASTEiJ_G0034428.1 mouse_genomes_project 9 122823026 122845960 + Ctnnb1 protein_coding retained_intron MGP_CASTEiJ_T0095422.1 MGP_CASTEiJ_G0034428.1 mouse_genomes_project 9 122823118 122850025 + MGP_CASTEiJ_P0095422 Ctnnb1 protein_coding protein_coding MGP_CASTEiJ_T0095423.1 MGP_CASTEiJ_G0034428.1 mouse_genomes_project 9 122823163 122841224 + MGP_CASTEiJ_P0095423 Ctnnb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095424.1 MGP_CASTEiJ_G0034428.1 mouse_genomes_project 9 122823358 122840807 + MGP_CASTEiJ_P0095424 Ctnnb1 protein_coding protein_coding MGP_CASTEiJ_T0095425.1 MGP_CASTEiJ_G0034428.1 mouse_genomes_project 9 122839734 122849036 + MGP_CASTEiJ_P0095425 Ctnnb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095426.1 MGP_CASTEiJ_G0034428.1 mouse_genomes_project 9 122840602 122844912 + MGP_CASTEiJ_P0095426 Ctnnb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095427.1 MGP_CASTEiJ_G0034428.1 mouse_genomes_project 9 122844637 122845354 + Ctnnb1 protein_coding processed_transcript MGP_CASTEiJ_T0095428.1 MGP_CASTEiJ_G0034428.1 mouse_genomes_project 9 122844809 122847154 + Ctnnb1 protein_coding processed_transcript MGP_CASTEiJ_T0095429.1 MGP_CASTEiJ_G0034428.1 mouse_genomes_project 9 122844969 122847049 + MGP_CASTEiJ_P0095429 Ctnnb1 protein_coding protein_coding MGP_CASTEiJ_T0095430.1 MGP_CASTEiJ_G0034428.1 mouse_genomes_project 9 122845426 122848544 + MGP_CASTEiJ_P0095430 Ctnnb1 protein_coding protein_coding MGP_CASTEiJ_T0095431.1 MGP_CASTEiJ_G0034428.1 mouse_genomes_project 9 122846378 122847340 + Ctnnb1 protein_coding retained_intron MGP_CASTEiJ_T0093037.1 MGP_CASTEiJ_G0033957.1 mouse_genomes_project 9 65030488 65067826 + MGP_CASTEiJ_P0093037 Clpx protein_coding protein_coding MGP_CASTEiJ_T0093038.1 MGP_CASTEiJ_G0033957.1 mouse_genomes_project 9 65030523 65067827 + MGP_CASTEiJ_P0093038 Clpx protein_coding protein_coding MGP_CASTEiJ_T0093039.1 MGP_CASTEiJ_G0033957.1 mouse_genomes_project 9 65030560 65046879 + Clpx protein_coding retained_intron MGP_CASTEiJ_T0093040.1 MGP_CASTEiJ_G0033957.1 mouse_genomes_project 9 65047783 65056162 + MGP_CASTEiJ_P0093040 Clpx protein_coding protein_coding MGP_CASTEiJ_T0092040.1 MGP_CASTEiJ_G0033643.1 mouse_genomes_project 9 37796249 37797470 + MGP_CASTEiJ_P0092040 Olfr960 protein_coding protein_coding MGP_CASTEiJ_T0094129.1 MGP_CASTEiJ_G0034193.1 mouse_genomes_project 9 103889131 103943148 + MGP_CASTEiJ_P0094129 Topbp1 protein_coding protein_coding MGP_CASTEiJ_T0094130.1 MGP_CASTEiJ_G0034193.1 mouse_genomes_project 9 103889147 103889909 + Topbp1 protein_coding retained_intron MGP_CASTEiJ_T0094131.1 MGP_CASTEiJ_G0034193.1 mouse_genomes_project 9 103889419 103895483 + MGP_CASTEiJ_P0094131 Topbp1 protein_coding protein_coding MGP_CASTEiJ_T0094132.1 MGP_CASTEiJ_G0034193.1 mouse_genomes_project 9 103917112 103926123 + Topbp1 protein_coding retained_intron MGP_CASTEiJ_T0094133.1 MGP_CASTEiJ_G0034193.1 mouse_genomes_project 9 103917142 103918952 + Topbp1 protein_coding retained_intron MGP_CASTEiJ_T0094134.1 MGP_CASTEiJ_G0034193.1 mouse_genomes_project 9 103922025 103932946 + MGP_CASTEiJ_P0094134 Topbp1 protein_coding protein_coding MGP_CASTEiJ_T0094135.1 MGP_CASTEiJ_G0034193.1 mouse_genomes_project 9 103934538 103939440 + MGP_CASTEiJ_P0094135 Topbp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094136.1 MGP_CASTEiJ_G0034193.1 mouse_genomes_project 9 103934840 103937401 + Topbp1 protein_coding retained_intron MGP_CASTEiJ_T0094137.1 MGP_CASTEiJ_G0034193.1 mouse_genomes_project 9 103938321 103939801 + Topbp1 protein_coding retained_intron MGP_CASTEiJ_T0094138.1 MGP_CASTEiJ_G0034193.1 mouse_genomes_project 9 103938942 103942621 + Topbp1 protein_coding retained_intron MGP_CASTEiJ_T0005287.1 MGP_CASTEiJ_G0004489.1 mouse_genomes_project 9 34916641 34921551 + Gm3896 antisense antisense MGP_CASTEiJ_T0011417.1 MGP_CASTEiJ_G0009605.1 mouse_genomes_project 9 112347268 112347544 - Gm24860 misc_RNA misc_RNA MGP_CASTEiJ_T0092723.1 MGP_CASTEiJ_G0033876.1 mouse_genomes_project 9 56823003 56829285 - MGP_CASTEiJ_P0092723 Cplx3 protein_coding protein_coding MGP_CASTEiJ_T0095405.1 MGP_CASTEiJ_G0034422.1 mouse_genomes_project 9 121955451 121974897 + MGP_CASTEiJ_P0095405 Mobp protein_coding protein_coding MGP_CASTEiJ_T0095406.1 MGP_CASTEiJ_G0034422.1 mouse_genomes_project 9 121955451 121982677 + MGP_CASTEiJ_P0095406 Mobp protein_coding protein_coding MGP_CASTEiJ_T0095407.1 MGP_CASTEiJ_G0034422.1 mouse_genomes_project 9 121955451 121988032 + MGP_CASTEiJ_P0095407 Mobp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095408.1 MGP_CASTEiJ_G0034422.1 mouse_genomes_project 9 121955451 121982677 + MGP_CASTEiJ_P0095408 Mobp protein_coding protein_coding MGP_CASTEiJ_T0091793.1 MGP_CASTEiJ_G0033529.1 mouse_genomes_project 9 30244064 30363209 - MGP_CASTEiJ_P0091793 Fli1 protein_coding protein_coding MGP_CASTEiJ_T0091794.1 MGP_CASTEiJ_G0033529.1 mouse_genomes_project 9 30249919 30364497 - MGP_CASTEiJ_P0091794 Fli1 protein_coding protein_coding MGP_CASTEiJ_T0009094.1 MGP_CASTEiJ_G0007324.1 mouse_genomes_project 9 108202944 108203708 - 4930429P21Rik lincRNA lincRNA MGP_CASTEiJ_T0009095.1 MGP_CASTEiJ_G0007324.1 mouse_genomes_project 9 108203443 108205662 - 4930429P21Rik lincRNA lincRNA MGP_CASTEiJ_T0094450.1 MGP_CASTEiJ_G0034251.1 mouse_genomes_project 9 108412463 108423180 + MGP_CASTEiJ_P0094450 Rassf1 protein_coding protein_coding MGP_CASTEiJ_T0094451.1 MGP_CASTEiJ_G0034251.1 mouse_genomes_project 9 108412470 108415417 + Rassf1 protein_coding retained_intron MGP_CASTEiJ_T0094452.1 MGP_CASTEiJ_G0034251.1 mouse_genomes_project 9 108412475 108423176 + MGP_CASTEiJ_P0094452 Rassf1 protein_coding protein_coding MGP_CASTEiJ_T0094453.1 MGP_CASTEiJ_G0034251.1 mouse_genomes_project 9 108412498 108423176 + MGP_CASTEiJ_P0094453 Rassf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094454.1 MGP_CASTEiJ_G0034251.1 mouse_genomes_project 9 108415493 108423176 + MGP_CASTEiJ_P0094454 Rassf1 protein_coding protein_coding MGP_CASTEiJ_T0094455.1 MGP_CASTEiJ_G0034251.1 mouse_genomes_project 9 108416287 108418709 + Rassf1 protein_coding processed_transcript MGP_CASTEiJ_T0094456.1 MGP_CASTEiJ_G0034251.1 mouse_genomes_project 9 108417519 108423176 + Rassf1 protein_coding processed_transcript MGP_CASTEiJ_T0094457.1 MGP_CASTEiJ_G0034251.1 mouse_genomes_project 9 108417651 108423176 + Rassf1 protein_coding retained_intron MGP_CASTEiJ_T0094458.1 MGP_CASTEiJ_G0034251.1 mouse_genomes_project 9 108418843 108422747 + Rassf1 protein_coding retained_intron MGP_CASTEiJ_T0094459.1 MGP_CASTEiJ_G0034251.1 mouse_genomes_project 9 108418850 108421347 + Rassf1 protein_coding retained_intron MGP_CASTEiJ_T0091949.1 MGP_CASTEiJ_G0033571.1 mouse_genomes_project 9 35470194 35475106 + MGP_CASTEiJ_P0091949 Vsig2 protein_coding protein_coding MGP_CASTEiJ_T0092017.1 MGP_CASTEiJ_G0033626.1 mouse_genomes_project 9 37044919 37045980 - MGP_CASTEiJ_P0092017 Olfr146 protein_coding protein_coding MGP_CASTEiJ_T0017781.1 MGP_CASTEiJ_G0015054.1 mouse_genomes_project 9 59348547 59349755 - processed_transcript processed_transcript MGP_CASTEiJ_T0100149.1 MGP_CASTEiJ_G0037062.1 mouse_genomes_project 9 84808174 84808359 + Gm26146 snRNA snRNA MGP_CASTEiJ_T0009028.1 MGP_CASTEiJ_G0007270.1 mouse_genomes_project 9 68146376 68146749 + Gm28195 lincRNA lincRNA MGP_CASTEiJ_T0093260.1 MGP_CASTEiJ_G0034012.1 mouse_genomes_project 9 71534246 71541754 - MGP_CASTEiJ_P0093260 Polr2m protein_coding protein_coding MGP_CASTEiJ_T0093261.1 MGP_CASTEiJ_G0034012.1 mouse_genomes_project 9 71534280 71540772 - MGP_CASTEiJ_P0093261 Polr2m protein_coding protein_coding MGP_CASTEiJ_T0093266.1 MGP_CASTEiJ_G0034012.1 mouse_genomes_project 9 71537280 71541729 - MGP_CASTEiJ_P0093266 Polr2m protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092009.1 MGP_CASTEiJ_G0033618.1 mouse_genomes_project 9 36820369 36821436 + MGP_CASTEiJ_P0092009 Olfr923 protein_coding protein_coding MGP_CASTEiJ_T0094445.1 MGP_CASTEiJ_G0034250.1 mouse_genomes_project 9 108408226 108412228 + MGP_CASTEiJ_P0094445 Zmynd10 protein_coding protein_coding MGP_CASTEiJ_T0094446.1 MGP_CASTEiJ_G0034250.1 mouse_genomes_project 9 108408232 108408798 + Zmynd10 protein_coding processed_transcript MGP_CASTEiJ_T0094447.1 MGP_CASTEiJ_G0034250.1 mouse_genomes_project 9 108408382 108412228 + MGP_CASTEiJ_P0094447 Zmynd10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094448.1 MGP_CASTEiJ_G0034250.1 mouse_genomes_project 9 108410075 108411124 + Zmynd10 protein_coding retained_intron MGP_CASTEiJ_T0094449.1 MGP_CASTEiJ_G0034250.1 mouse_genomes_project 9 108411397 108412128 + Zmynd10 protein_coding retained_intron MGP_CASTEiJ_T0100167.1 MGP_CASTEiJ_G0037080.1 mouse_genomes_project 9 116250037 116250141 + Gm23889 snRNA snRNA MGP_CASTEiJ_T0009116.1 MGP_CASTEiJ_G0007339.1 mouse_genomes_project 9 120597400 120598312 + Gm16295 lincRNA lincRNA MGP_CASTEiJ_T0093648.1 MGP_CASTEiJ_G0034092.1 mouse_genomes_project 9 86553179 86558786 + MGP_CASTEiJ_P0093648 Tpbg protein_coding protein_coding MGP_CASTEiJ_T0093649.1 MGP_CASTEiJ_G0034092.1 mouse_genomes_project 9 86553664 86558786 + MGP_CASTEiJ_P0093649 Tpbg protein_coding protein_coding MGP_CASTEiJ_T0093650.1 MGP_CASTEiJ_G0034092.1 mouse_genomes_project 9 86555110 86555675 + Tpbg protein_coding processed_transcript MGP_CASTEiJ_T0094054.1 MGP_CASTEiJ_G0034176.1 mouse_genomes_project 9 101571436 101594640 + MGP_CASTEiJ_P0094054 Msl2 protein_coding protein_coding MGP_CASTEiJ_T0094055.1 MGP_CASTEiJ_G0034176.1 mouse_genomes_project 9 101572084 101598500 + MGP_CASTEiJ_P0094055 Msl2 protein_coding protein_coding MGP_CASTEiJ_T0015548.1 MGP_CASTEiJ_G0013711.1 mouse_genomes_project 9 122133728 122134319 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0094904.1 MGP_CASTEiJ_G0034314.1 mouse_genomes_project 9 109924659 109965173 + MGP_CASTEiJ_P0094904 Pfkfb4 protein_coding protein_coding MGP_CASTEiJ_T0094905.1 MGP_CASTEiJ_G0034314.1 mouse_genomes_project 9 109924783 109965173 + MGP_CASTEiJ_P0094905 Pfkfb4 protein_coding protein_coding MGP_CASTEiJ_T0094906.1 MGP_CASTEiJ_G0034314.1 mouse_genomes_project 9 109924829 109932100 + Pfkfb4 protein_coding retained_intron MGP_CASTEiJ_T0094907.1 MGP_CASTEiJ_G0034314.1 mouse_genomes_project 9 109924873 109925783 + Pfkfb4 protein_coding retained_intron MGP_CASTEiJ_T0094908.1 MGP_CASTEiJ_G0034314.1 mouse_genomes_project 9 109924897 109963657 + Pfkfb4 protein_coding retained_intron MGP_CASTEiJ_T0094909.1 MGP_CASTEiJ_G0034314.1 mouse_genomes_project 9 109924897 109963657 + MGP_CASTEiJ_P0094909 Pfkfb4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094910.1 MGP_CASTEiJ_G0034314.1 mouse_genomes_project 9 109924897 109963657 + MGP_CASTEiJ_P0094910 Pfkfb4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094911.1 MGP_CASTEiJ_G0034314.1 mouse_genomes_project 9 109931718 109943481 + Pfkfb4 protein_coding processed_transcript MGP_CASTEiJ_T0094912.1 MGP_CASTEiJ_G0034314.1 mouse_genomes_project 9 109944044 109961813 + MGP_CASTEiJ_P0094912 Pfkfb4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094913.1 MGP_CASTEiJ_G0034314.1 mouse_genomes_project 9 109951081 109965142 + Pfkfb4 protein_coding processed_transcript MGP_CASTEiJ_T0091791.1 MGP_CASTEiJ_G0033528.1 mouse_genomes_project 9 30189352 30219904 + MGP_CASTEiJ_P0091791 Kcnj1 protein_coding protein_coding MGP_CASTEiJ_T0091792.1 MGP_CASTEiJ_G0033528.1 mouse_genomes_project 9 30214582 30219904 + MGP_CASTEiJ_P0091792 Kcnj1 protein_coding protein_coding MGP_CASTEiJ_T0005349.1 MGP_CASTEiJ_G0004530.1 mouse_genomes_project 9 95813341 95847155 - Gm16126 antisense antisense MGP_CASTEiJ_T0093912.1 MGP_CASTEiJ_G0034143.1 mouse_genomes_project 9 97115240 97187779 - MGP_CASTEiJ_P0093912 Pxylp1 protein_coding protein_coding MGP_CASTEiJ_T0093913.1 MGP_CASTEiJ_G0034143.1 mouse_genomes_project 9 97115248 97187795 - MGP_CASTEiJ_P0093913 Pxylp1 protein_coding protein_coding MGP_CASTEiJ_T0093914.1 MGP_CASTEiJ_G0034143.1 mouse_genomes_project 9 97115248 97187840 - MGP_CASTEiJ_P0093914 Pxylp1 protein_coding protein_coding MGP_CASTEiJ_T0093915.1 MGP_CASTEiJ_G0034143.1 mouse_genomes_project 9 97115490 97187799 - MGP_CASTEiJ_P0093915 Pxylp1 protein_coding protein_coding MGP_CASTEiJ_T0093916.1 MGP_CASTEiJ_G0034143.1 mouse_genomes_project 9 97117315 97187794 - MGP_CASTEiJ_P0093916 Pxylp1 protein_coding protein_coding MGP_CASTEiJ_T0093917.1 MGP_CASTEiJ_G0034143.1 mouse_genomes_project 9 97117486 97159460 - MGP_CASTEiJ_P0093917 Pxylp1 protein_coding protein_coding MGP_CASTEiJ_T0093918.1 MGP_CASTEiJ_G0034143.1 mouse_genomes_project 9 97134791 97151507 - Pxylp1 protein_coding processed_transcript MGP_CASTEiJ_T0093919.1 MGP_CASTEiJ_G0034143.1 mouse_genomes_project 9 97134901 97191057 - MGP_CASTEiJ_P0093919 Pxylp1 protein_coding protein_coding MGP_CASTEiJ_T0093920.1 MGP_CASTEiJ_G0034143.1 mouse_genomes_project 9 97135590 97187786 - Pxylp1 protein_coding retained_intron MGP_CASTEiJ_T0093921.1 MGP_CASTEiJ_G0034143.1 mouse_genomes_project 9 97135707 97159536 - MGP_CASTEiJ_P0093921 Pxylp1 protein_coding protein_coding MGP_CASTEiJ_T0093922.1 MGP_CASTEiJ_G0034143.1 mouse_genomes_project 9 97153088 97159538 - Pxylp1 protein_coding processed_transcript MGP_CASTEiJ_T0093923.1 MGP_CASTEiJ_G0034143.1 mouse_genomes_project 9 97157367 97190478 - Pxylp1 protein_coding processed_transcript MGP_CASTEiJ_T0093924.1 MGP_CASTEiJ_G0034143.1 mouse_genomes_project 9 97185996 97187799 - Pxylp1 protein_coding retained_intron MGP_CASTEiJ_T0092648.1 MGP_CASTEiJ_G0033851.1 mouse_genomes_project 9 55174621 55213485 + MGP_CASTEiJ_P0092648 Pstpip1 protein_coding protein_coding MGP_CASTEiJ_T0092649.1 MGP_CASTEiJ_G0033851.1 mouse_genomes_project 9 55174635 55213469 + Pstpip1 protein_coding retained_intron MGP_CASTEiJ_T0092650.1 MGP_CASTEiJ_G0033851.1 mouse_genomes_project 9 55174635 55213473 + Pstpip1 protein_coding retained_intron MGP_CASTEiJ_T0092651.1 MGP_CASTEiJ_G0033851.1 mouse_genomes_project 9 55205019 55210690 + Pstpip1 protein_coding processed_transcript MGP_CASTEiJ_T0092652.1 MGP_CASTEiJ_G0033851.1 mouse_genomes_project 9 55206822 55208494 + Pstpip1 protein_coding retained_intron MGP_CASTEiJ_T0092653.1 MGP_CASTEiJ_G0033851.1 mouse_genomes_project 9 55207791 55208771 + Pstpip1 protein_coding retained_intron MGP_CASTEiJ_T0092654.1 MGP_CASTEiJ_G0033851.1 mouse_genomes_project 9 55207791 55210749 + Pstpip1 protein_coding retained_intron MGP_CASTEiJ_T0093104.1 MGP_CASTEiJ_G0033976.1 mouse_genomes_project 9 65878960 65919030 - MGP_CASTEiJ_P0093104 Snx1 protein_coding protein_coding MGP_CASTEiJ_T0093105.1 MGP_CASTEiJ_G0033976.1 mouse_genomes_project 9 65879951 65882149 - Snx1 protein_coding retained_intron MGP_CASTEiJ_T0093106.1 MGP_CASTEiJ_G0033976.1 mouse_genomes_project 9 65884992 65887385 - Snx1 protein_coding retained_intron MGP_CASTEiJ_T0093107.1 MGP_CASTEiJ_G0033976.1 mouse_genomes_project 9 65887352 65892504 - Snx1 protein_coding retained_intron MGP_CASTEiJ_T0093108.1 MGP_CASTEiJ_G0033976.1 mouse_genomes_project 9 65888198 65920751 - MGP_CASTEiJ_P0093108 Snx1 protein_coding protein_coding MGP_CASTEiJ_T0093109.1 MGP_CASTEiJ_G0033976.1 mouse_genomes_project 9 65895021 65896192 - Snx1 protein_coding retained_intron MGP_CASTEiJ_T0093110.1 MGP_CASTEiJ_G0033976.1 mouse_genomes_project 9 65900999 65918942 - Snx1 protein_coding retained_intron MGP_CASTEiJ_T0093499.1 MGP_CASTEiJ_G0034061.1 mouse_genomes_project 9 78470012 78496926 - MGP_CASTEiJ_P0093499 Fbxo9 protein_coding protein_coding MGP_CASTEiJ_T0093500.1 MGP_CASTEiJ_G0034061.1 mouse_genomes_project 9 78470015 78497335 - MGP_CASTEiJ_P0093500 Fbxo9 protein_coding protein_coding MGP_CASTEiJ_T0093501.1 MGP_CASTEiJ_G0034061.1 mouse_genomes_project 9 78470354 78473232 - Fbxo9 protein_coding retained_intron MGP_CASTEiJ_T0093502.1 MGP_CASTEiJ_G0034061.1 mouse_genomes_project 9 78474198 78475991 - Fbxo9 protein_coding retained_intron MGP_CASTEiJ_T0093503.1 MGP_CASTEiJ_G0034061.1 mouse_genomes_project 9 78483891 78496874 - MGP_CASTEiJ_P0093503 Fbxo9 protein_coding protein_coding MGP_CASTEiJ_T0093504.1 MGP_CASTEiJ_G0034061.1 mouse_genomes_project 9 78488017 78496857 - MGP_CASTEiJ_P0093504 Fbxo9 protein_coding protein_coding MGP_CASTEiJ_T0091213.1 MGP_CASTEiJ_G0033317.1 mouse_genomes_project 9 486332 834869 + MGP_CASTEiJ_P0091213 Gucy1a2 protein_coding protein_coding MGP_CASTEiJ_T0092634.1 MGP_CASTEiJ_G0033847.1 mouse_genomes_project 9 54593101 54597035 + MGP_CASTEiJ_P0092634 Isl2 protein_coding protein_coding MGP_CASTEiJ_T0092635.1 MGP_CASTEiJ_G0033847.1 mouse_genomes_project 9 54595609 54600653 + MGP_CASTEiJ_P0092635 Isl2 protein_coding protein_coding MGP_CASTEiJ_T0092636.1 MGP_CASTEiJ_G0033847.1 mouse_genomes_project 9 54595668 54600653 + MGP_CASTEiJ_P0092636 Isl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092637.1 MGP_CASTEiJ_G0033847.1 mouse_genomes_project 9 54595668 54600651 + MGP_CASTEiJ_P0092637 Isl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092638.1 MGP_CASTEiJ_G0033847.1 mouse_genomes_project 9 54596544 54645967 + MGP_CASTEiJ_P0092638 Isl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092639.1 MGP_CASTEiJ_G0033847.1 mouse_genomes_project 9 54596800 54598751 + Isl2 protein_coding retained_intron MGP_CASTEiJ_T0092990.1 MGP_CASTEiJ_G0033940.1 mouse_genomes_project 9 63811392 63816784 + MGP_CASTEiJ_P0092990 protein_coding protein_coding MGP_CASTEiJ_T0093015.1 MGP_CASTEiJ_G0033947.1 mouse_genomes_project 9 64385475 64413319 - MGP_CASTEiJ_P0093015 Rab11a protein_coding protein_coding MGP_CASTEiJ_T0093016.1 MGP_CASTEiJ_G0033947.1 mouse_genomes_project 9 64390162 64413303 - MGP_CASTEiJ_P0093016 Rab11a protein_coding protein_coding MGP_CASTEiJ_T0093017.1 MGP_CASTEiJ_G0033947.1 mouse_genomes_project 9 64390264 64400603 - Rab11a protein_coding retained_intron MGP_CASTEiJ_T0093018.1 MGP_CASTEiJ_G0033947.1 mouse_genomes_project 9 64390365 64401593 - MGP_CASTEiJ_P0093018 Rab11a protein_coding protein_coding MGP_CASTEiJ_T0093019.1 MGP_CASTEiJ_G0033947.1 mouse_genomes_project 9 64390429 64401336 - Rab11a protein_coding processed_transcript MGP_CASTEiJ_T0093020.1 MGP_CASTEiJ_G0033947.1 mouse_genomes_project 9 64390602 64413184 - MGP_CASTEiJ_P0093020 Rab11a protein_coding protein_coding MGP_CASTEiJ_T0093021.1 MGP_CASTEiJ_G0033947.1 mouse_genomes_project 9 64390612 64413313 - MGP_CASTEiJ_P0093021 Rab11a protein_coding protein_coding MGP_CASTEiJ_T0093022.1 MGP_CASTEiJ_G0033947.1 mouse_genomes_project 9 64401573 64411299 - Rab11a protein_coding processed_transcript MGP_CASTEiJ_T0095363.1 MGP_CASTEiJ_G0034404.1 mouse_genomes_project 9 121063880 121067989 - MGP_CASTEiJ_P0095363 Myd88 protein_coding protein_coding MGP_CASTEiJ_T0095364.1 MGP_CASTEiJ_G0034404.1 mouse_genomes_project 9 121063892 121067950 - Myd88 protein_coding retained_intron MGP_CASTEiJ_T0095366.1 MGP_CASTEiJ_G0034404.1 mouse_genomes_project 9 121067637 121069359 - MGP_CASTEiJ_P0095366 Myd88 protein_coding protein_coding MGP_CASTEiJ_T0093075.1 MGP_CASTEiJ_G0033971.1 mouse_genomes_project 9 65601794 65664420 - MGP_CASTEiJ_P0093075 Trip4 protein_coding protein_coding MGP_CASTEiJ_T0093076.1 MGP_CASTEiJ_G0033971.1 mouse_genomes_project 9 65611941 65628746 - Trip4 protein_coding retained_intron MGP_CASTEiJ_T0093077.1 MGP_CASTEiJ_G0033971.1 mouse_genomes_project 9 65660355 65694370 - MGP_CASTEiJ_P0093077 Trip4 protein_coding protein_coding MGP_CASTEiJ_T0093081.1 MGP_CASTEiJ_G0033971.1 mouse_genomes_project 9 65677933 65694303 - Trip4 protein_coding processed_transcript MGP_CASTEiJ_T0093082.1 MGP_CASTEiJ_G0033971.1 mouse_genomes_project 9 65678271 65694370 - Trip4 protein_coding processed_transcript MGP_CASTEiJ_T0093083.1 MGP_CASTEiJ_G0033971.1 mouse_genomes_project 9 65678738 65694378 - Trip4 protein_coding processed_transcript MGP_CASTEiJ_T0093084.1 MGP_CASTEiJ_G0033971.1 mouse_genomes_project 9 65682429 65694370 - Trip4 protein_coding retained_intron MGP_CASTEiJ_T0098416.1 MGP_CASTEiJ_G0035347.1 mouse_genomes_project 9 36152041 36152968 + pseudogene pseudogene MGP_CASTEiJ_T0015501.1 MGP_CASTEiJ_G0013664.1 mouse_genomes_project 9 91334934 91335376 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0094434.1 MGP_CASTEiJ_G0034247.1 mouse_genomes_project 9 108394863 108399597 + MGP_CASTEiJ_P0094434 Tmem115 protein_coding protein_coding MGP_CASTEiJ_T0092834.1 MGP_CASTEiJ_G0033906.1 mouse_genomes_project 9 58937624 58969651 + MGP_CASTEiJ_P0092834 Celf6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092835.1 MGP_CASTEiJ_G0033906.1 mouse_genomes_project 9 58937910 58969651 + MGP_CASTEiJ_P0092835 Celf6 protein_coding protein_coding MGP_CASTEiJ_T0092836.1 MGP_CASTEiJ_G0033906.1 mouse_genomes_project 9 58937910 58969651 + MGP_CASTEiJ_P0092836 Celf6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092837.1 MGP_CASTEiJ_G0033906.1 mouse_genomes_project 9 58938096 58971525 + MGP_CASTEiJ_P0092837 Celf6 protein_coding protein_coding MGP_CASTEiJ_T0092838.1 MGP_CASTEiJ_G0033906.1 mouse_genomes_project 9 58963513 58964267 + Celf6 protein_coding retained_intron MGP_CASTEiJ_T0092839.1 MGP_CASTEiJ_G0033906.1 mouse_genomes_project 9 58964888 58968483 + Celf6 protein_coding retained_intron MGP_CASTEiJ_T0009032.1 MGP_CASTEiJ_G0007273.1 mouse_genomes_project 9 72299190 72325491 - Gm27188 lincRNA lincRNA MGP_CASTEiJ_T0010734.1 MGP_CASTEiJ_G0008922.1 mouse_genomes_project 9 18415628 18415720 - Mir7082 miRNA miRNA MGP_CASTEiJ_T0091999.1 MGP_CASTEiJ_G0033614.1 mouse_genomes_project 9 36689040 36731652 + MGP_CASTEiJ_P0091999 Vwa5a protein_coding protein_coding MGP_CASTEiJ_T0092000.1 MGP_CASTEiJ_G0033614.1 mouse_genomes_project 9 36689044 36731068 + MGP_CASTEiJ_P0092000 Vwa5a protein_coding protein_coding MGP_CASTEiJ_T0092001.1 MGP_CASTEiJ_G0033614.1 mouse_genomes_project 9 36689840 36703924 + MGP_CASTEiJ_P0092001 Vwa5a protein_coding protein_coding MGP_CASTEiJ_T0092002.1 MGP_CASTEiJ_G0033614.1 mouse_genomes_project 9 36713532 36722809 + Vwa5a protein_coding retained_intron MGP_CASTEiJ_T0092003.1 MGP_CASTEiJ_G0033614.1 mouse_genomes_project 9 36722600 36724237 + Vwa5a protein_coding retained_intron MGP_CASTEiJ_T0092004.1 MGP_CASTEiJ_G0033614.1 mouse_genomes_project 9 36724077 36726083 + Vwa5a protein_coding retained_intron MGP_CASTEiJ_T0092005.1 MGP_CASTEiJ_G0033614.1 mouse_genomes_project 9 36724275 36730206 + MGP_CASTEiJ_P0092005 Vwa5a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0005345.1 MGP_CASTEiJ_G0004526.1 mouse_genomes_project 9 84014190 84039329 + Gm2087 antisense antisense MGP_CASTEiJ_T0002333.1 MGP_CASTEiJ_G0002250.1 mouse_genomes_project 9 90245322 90250124 - TEC TEC MGP_CASTEiJ_T0095122.1 MGP_CASTEiJ_G0034347.1 mouse_genomes_project 9 111886602 111890601 + MGP_CASTEiJ_P0095122 Prss44 protein_coding protein_coding MGP_CASTEiJ_T0095123.1 MGP_CASTEiJ_G0034347.1 mouse_genomes_project 9 111886635 111897367 + MGP_CASTEiJ_P0095123 Prss44 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095124.1 MGP_CASTEiJ_G0034347.1 mouse_genomes_project 9 111887047 111889128 + MGP_CASTEiJ_P0095124 Prss44 protein_coding protein_coding MGP_CASTEiJ_T0095125.1 MGP_CASTEiJ_G0034347.1 mouse_genomes_project 9 111887821 111889550 + Prss44 protein_coding retained_intron MGP_CASTEiJ_T0005299.1 MGP_CASTEiJ_G0004498.1 mouse_genomes_project 9 50124585 50130278 + 2010007H06Rik antisense antisense MGP_CASTEiJ_T0005300.1 MGP_CASTEiJ_G0004498.1 mouse_genomes_project 9 50126367 50126995 + 2010007H06Rik antisense antisense MGP_CASTEiJ_T0094708.1 MGP_CASTEiJ_G0034287.1 mouse_genomes_project 9 109269854 109270756 + Gpx1 protein_coding retained_intron MGP_CASTEiJ_T0094709.1 MGP_CASTEiJ_G0034287.1 mouse_genomes_project 9 109270005 109271297 + MGP_CASTEiJ_P0094709 Gpx1 protein_coding protein_coding MGP_CASTEiJ_T0094710.1 MGP_CASTEiJ_G0034287.1 mouse_genomes_project 9 109270194 109271204 + MGP_CASTEiJ_P0094710 Gpx1 protein_coding protein_coding MGP_CASTEiJ_T0094711.1 MGP_CASTEiJ_G0034287.1 mouse_genomes_project 9 109270229 109271204 + MGP_CASTEiJ_P0094711 Gpx1 protein_coding protein_coding MGP_CASTEiJ_T0009114.1 MGP_CASTEiJ_G0007337.1 mouse_genomes_project 9 119759286 119780069 + Gm17399 lincRNA lincRNA MGP_CASTEiJ_T0093876.1 MGP_CASTEiJ_G0034138.1 mouse_genomes_project 9 96432936 96570673 + MGP_CASTEiJ_P0093876 Tfdp2 protein_coding protein_coding MGP_CASTEiJ_T0093877.1 MGP_CASTEiJ_G0034138.1 mouse_genomes_project 9 96432984 96571032 + MGP_CASTEiJ_P0093877 Tfdp2 protein_coding protein_coding MGP_CASTEiJ_T0093878.1 MGP_CASTEiJ_G0034138.1 mouse_genomes_project 9 96432997 96565359 + MGP_CASTEiJ_P0093878 Tfdp2 protein_coding protein_coding MGP_CASTEiJ_T0093879.1 MGP_CASTEiJ_G0034138.1 mouse_genomes_project 9 96433028 96566376 + MGP_CASTEiJ_P0093879 Tfdp2 protein_coding protein_coding MGP_CASTEiJ_T0093880.1 MGP_CASTEiJ_G0034138.1 mouse_genomes_project 9 96433060 96484541 + Tfdp2 protein_coding processed_transcript MGP_CASTEiJ_T0093881.1 MGP_CASTEiJ_G0034138.1 mouse_genomes_project 9 96438797 96540984 + MGP_CASTEiJ_P0093881 Tfdp2 protein_coding protein_coding MGP_CASTEiJ_T0093882.1 MGP_CASTEiJ_G0034138.1 mouse_genomes_project 9 96498927 96556289 + MGP_CASTEiJ_P0093882 Tfdp2 protein_coding protein_coding MGP_CASTEiJ_T0093883.1 MGP_CASTEiJ_G0034138.1 mouse_genomes_project 9 96498964 96533723 + MGP_CASTEiJ_P0093883 Tfdp2 protein_coding protein_coding MGP_CASTEiJ_T0093884.1 MGP_CASTEiJ_G0034138.1 mouse_genomes_project 9 96498981 96565362 + MGP_CASTEiJ_P0093884 Tfdp2 protein_coding protein_coding MGP_CASTEiJ_T0093885.1 MGP_CASTEiJ_G0034138.1 mouse_genomes_project 9 96499504 96566300 + MGP_CASTEiJ_P0093885 Tfdp2 protein_coding protein_coding MGP_CASTEiJ_T0093886.1 MGP_CASTEiJ_G0034138.1 mouse_genomes_project 9 96534374 96537508 + Tfdp2 protein_coding retained_intron MGP_CASTEiJ_T0093887.1 MGP_CASTEiJ_G0034138.1 mouse_genomes_project 9 96550811 96553960 + Tfdp2 protein_coding retained_intron MGP_CASTEiJ_T0093888.1 MGP_CASTEiJ_G0034138.1 mouse_genomes_project 9 96556272 96565298 + MGP_CASTEiJ_P0093888 Tfdp2 protein_coding protein_coding MGP_CASTEiJ_T0092744.1 MGP_CASTEiJ_G0033884.1 mouse_genomes_project 9 57164650 57183236 + MGP_CASTEiJ_P0092744 Ubl7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0094208.1 MGP_CASTEiJ_G0034208.1 mouse_genomes_project 9 105876343 106127399 - MGP_CASTEiJ_P0094208 Nek11 protein_coding protein_coding MGP_CASTEiJ_T0094209.1 MGP_CASTEiJ_G0034208.1 mouse_genomes_project 9 105877184 106124917 - MGP_CASTEiJ_P0094209 Nek11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094210.1 MGP_CASTEiJ_G0034208.1 mouse_genomes_project 9 105970469 106127162 - MGP_CASTEiJ_P0094210 Nek11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094211.1 MGP_CASTEiJ_G0034208.1 mouse_genomes_project 9 106026368 106127133 - MGP_CASTEiJ_P0094211 Nek11 protein_coding protein_coding MGP_CASTEiJ_T0092261.1 MGP_CASTEiJ_G0033726.1 mouse_genomes_project 9 43299653 43379580 - MGP_CASTEiJ_P0092261 Kmt2a protein_coding unknown_likely_coding MGP_CASTEiJ_T0092262.1 MGP_CASTEiJ_G0033726.1 mouse_genomes_project 9 43299654 43379602 - MGP_CASTEiJ_P0092262 Kmt2a protein_coding protein_coding MGP_CASTEiJ_T0092263.1 MGP_CASTEiJ_G0033726.1 mouse_genomes_project 9 43299654 43379580 - MGP_CASTEiJ_P0092263 Kmt2a protein_coding protein_coding MGP_CASTEiJ_T0092264.1 MGP_CASTEiJ_G0033726.1 mouse_genomes_project 9 43310957 43316402 - MGP_CASTEiJ_P0092264 Kmt2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092265.1 MGP_CASTEiJ_G0033726.1 mouse_genomes_project 9 43319021 43346752 - MGP_CASTEiJ_P0092265 Kmt2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092266.1 MGP_CASTEiJ_G0033726.1 mouse_genomes_project 9 43340129 43379602 - MGP_CASTEiJ_P0092266 Kmt2a protein_coding protein_coding MGP_CASTEiJ_T0094104.1 MGP_CASTEiJ_G0034187.1 mouse_genomes_project 9 103545866 103580375 + Slco2a1 protein_coding processed_transcript MGP_CASTEiJ_T0094105.1 MGP_CASTEiJ_G0034187.1 mouse_genomes_project 9 103566701 103654427 + MGP_CASTEiJ_P0094105 Slco2a1 protein_coding protein_coding MGP_CASTEiJ_T0094106.1 MGP_CASTEiJ_G0034187.1 mouse_genomes_project 9 103566853 103570669 + Slco2a1 protein_coding retained_intron MGP_CASTEiJ_T0094107.1 MGP_CASTEiJ_G0034187.1 mouse_genomes_project 9 103567198 103661221 + MGP_CASTEiJ_P0094107 Slco2a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0005347.1 MGP_CASTEiJ_G0004528.1 mouse_genomes_project 9 94863553 94870174 - Gm16262 antisense antisense MGP_CASTEiJ_T0009088.1 MGP_CASTEiJ_G0007319.1 mouse_genomes_project 9 103308202 103308462 - Gm28621 lincRNA lincRNA MGP_CASTEiJ_T0009012.1 MGP_CASTEiJ_G0007258.1 mouse_genomes_project 9 56247142 56247940 - 2700012I20Rik lincRNA lincRNA MGP_CASTEiJ_T0092952.1 MGP_CASTEiJ_G0033933.1 mouse_genomes_project 9 62981794 62986175 - 2300009A05Rik protein_coding processed_transcript MGP_CASTEiJ_T0092953.1 MGP_CASTEiJ_G0033933.1 mouse_genomes_project 9 62981794 62986589 - MGP_CASTEiJ_P0092953 2300009A05Rik protein_coding protein_coding MGP_CASTEiJ_T0092954.1 MGP_CASTEiJ_G0033933.1 mouse_genomes_project 9 62981795 62986175 - 2300009A05Rik protein_coding processed_transcript MGP_CASTEiJ_T0092955.1 MGP_CASTEiJ_G0033933.1 mouse_genomes_project 9 62984820 62986594 - 2300009A05Rik protein_coding retained_intron MGP_CASTEiJ_T0100123.1 MGP_CASTEiJ_G0037036.1 mouse_genomes_project 9 46187851 46187958 - Gm22286 snRNA snRNA MGP_CASTEiJ_T0094424.1 MGP_CASTEiJ_G0034246.1 mouse_genomes_project 9 108254461 108390362 + MGP_CASTEiJ_P0094424 Cacna2d2 protein_coding protein_coding MGP_CASTEiJ_T0094425.1 MGP_CASTEiJ_G0034246.1 mouse_genomes_project 9 108254461 108390363 + MGP_CASTEiJ_P0094425 Cacna2d2 protein_coding protein_coding MGP_CASTEiJ_T0094426.1 MGP_CASTEiJ_G0034246.1 mouse_genomes_project 9 108254729 108390012 + MGP_CASTEiJ_P0094426 Cacna2d2 protein_coding protein_coding MGP_CASTEiJ_T0094427.1 MGP_CASTEiJ_G0034246.1 mouse_genomes_project 9 108254729 108390362 + MGP_CASTEiJ_P0094427 Cacna2d2 protein_coding protein_coding MGP_CASTEiJ_T0094428.1 MGP_CASTEiJ_G0034246.1 mouse_genomes_project 9 108254886 108390362 + MGP_CASTEiJ_P0094428 Cacna2d2 protein_coding protein_coding MGP_CASTEiJ_T0094429.1 MGP_CASTEiJ_G0034246.1 mouse_genomes_project 9 108254931 108388498 + MGP_CASTEiJ_P0094429 Cacna2d2 protein_coding protein_coding MGP_CASTEiJ_T0094430.1 MGP_CASTEiJ_G0034246.1 mouse_genomes_project 9 108364861 108372811 + Cacna2d2 protein_coding processed_transcript MGP_CASTEiJ_T0094431.1 MGP_CASTEiJ_G0034246.1 mouse_genomes_project 9 108368541 108373173 + Cacna2d2 protein_coding processed_transcript MGP_CASTEiJ_T0094432.1 MGP_CASTEiJ_G0034246.1 mouse_genomes_project 9 108382548 108384520 + Cacna2d2 protein_coding retained_intron MGP_CASTEiJ_T0094433.1 MGP_CASTEiJ_G0034246.1 mouse_genomes_project 9 108387691 108388601 + Cacna2d2 protein_coding retained_intron MGP_CASTEiJ_T0093212.1 MGP_CASTEiJ_G0033999.1 mouse_genomes_project 9 70008415 70019721 + MGP_CASTEiJ_P0093212 Gtf2a2 protein_coding protein_coding MGP_CASTEiJ_T0093213.1 MGP_CASTEiJ_G0033999.1 mouse_genomes_project 9 70008419 70019593 + Gtf2a2 protein_coding retained_intron MGP_CASTEiJ_T0093214.1 MGP_CASTEiJ_G0033999.1 mouse_genomes_project 9 70008430 70019592 + MGP_CASTEiJ_P0093214 Gtf2a2 protein_coding protein_coding MGP_CASTEiJ_T0093215.1 MGP_CASTEiJ_G0033999.1 mouse_genomes_project 9 70008431 70019593 + MGP_CASTEiJ_P0093215 Gtf2a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093216.1 MGP_CASTEiJ_G0033999.1 mouse_genomes_project 9 70008433 70019371 + Gtf2a2 protein_coding processed_transcript MGP_CASTEiJ_T0093217.1 MGP_CASTEiJ_G0033999.1 mouse_genomes_project 9 70008436 70014122 + Gtf2a2 protein_coding retained_intron MGP_CASTEiJ_T0093218.1 MGP_CASTEiJ_G0033999.1 mouse_genomes_project 9 70008436 70019592 + MGP_CASTEiJ_P0093218 Gtf2a2 protein_coding protein_coding MGP_CASTEiJ_T0093219.1 MGP_CASTEiJ_G0033999.1 mouse_genomes_project 9 70008439 70016338 + MGP_CASTEiJ_P0093219 Gtf2a2 protein_coding protein_coding MGP_CASTEiJ_T0093220.1 MGP_CASTEiJ_G0033999.1 mouse_genomes_project 9 70008444 70016333 + Gtf2a2 protein_coding retained_intron MGP_CASTEiJ_T0093221.1 MGP_CASTEiJ_G0033999.1 mouse_genomes_project 9 70008449 70011504 + Gtf2a2 protein_coding retained_intron MGP_CASTEiJ_T0093222.1 MGP_CASTEiJ_G0033999.1 mouse_genomes_project 9 70008460 70016350 + MGP_CASTEiJ_P0093222 Gtf2a2 protein_coding protein_coding MGP_CASTEiJ_T0093223.1 MGP_CASTEiJ_G0033999.1 mouse_genomes_project 9 70008508 70019593 + MGP_CASTEiJ_P0093223 Gtf2a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093224.1 MGP_CASTEiJ_G0033999.1 mouse_genomes_project 9 70011677 70019592 + Gtf2a2 protein_coding processed_transcript MGP_CASTEiJ_T0093225.1 MGP_CASTEiJ_G0033999.1 mouse_genomes_project 9 70012688 70016772 + Gtf2a2 protein_coding retained_intron MGP_CASTEiJ_T0093226.1 MGP_CASTEiJ_G0033999.1 mouse_genomes_project 9 70015911 70019592 + Gtf2a2 protein_coding retained_intron MGP_CASTEiJ_T0092183.1 MGP_CASTEiJ_G0033702.1 mouse_genomes_project 9 42693475 42711424 - MGP_CASTEiJ_P0092183 Nlrx1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091997.1 MGP_CASTEiJ_G0033612.1 mouse_genomes_project 9 36640080 36641058 - MGP_CASTEiJ_P0091997 Olfr918 protein_coding protein_coding MGP_CASTEiJ_T0002346.1 MGP_CASTEiJ_G0002263.1 mouse_genomes_project 9 98272766 98274313 - TEC TEC MGP_CASTEiJ_T0101385.1 MGP_CASTEiJ_G0038298.1 mouse_genomes_project 9 63815343 63815414 + Gm22455 snoRNA snoRNA MGP_CASTEiJ_T0093957.1 MGP_CASTEiJ_G0034152.1 mouse_genomes_project 9 98938823 98951716 - MGP_CASTEiJ_P0093957 Mrps22 protein_coding protein_coding MGP_CASTEiJ_T0093958.1 MGP_CASTEiJ_G0034152.1 mouse_genomes_project 9 98945226 98951701 - Mrps22 protein_coding retained_intron MGP_CASTEiJ_T0091961.1 MGP_CASTEiJ_G0033577.1 mouse_genomes_project 9 35655716 35661663 - MGP_CASTEiJ_P0091961 protein_coding protein_coding MGP_CASTEiJ_T0092454.1 MGP_CASTEiJ_G0033791.1 mouse_genomes_project 9 49493742 49531653 - MGP_CASTEiJ_P0092454 Dixdc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092455.1 MGP_CASTEiJ_G0033791.1 mouse_genomes_project 9 49493745 49562538 - MGP_CASTEiJ_P0092455 Dixdc1 protein_coding protein_coding MGP_CASTEiJ_T0092456.1 MGP_CASTEiJ_G0033791.1 mouse_genomes_project 9 49493749 49532399 - Dixdc1 protein_coding retained_intron MGP_CASTEiJ_T0092457.1 MGP_CASTEiJ_G0033791.1 mouse_genomes_project 9 49493749 49562630 - MGP_CASTEiJ_P0092457 Dixdc1 protein_coding protein_coding MGP_CASTEiJ_T0092458.1 MGP_CASTEiJ_G0033791.1 mouse_genomes_project 9 49497207 49529831 - Dixdc1 protein_coding processed_transcript MGP_CASTEiJ_T0092459.1 MGP_CASTEiJ_G0033791.1 mouse_genomes_project 9 49497207 49573771 - MGP_CASTEiJ_P0092459 Dixdc1 protein_coding protein_coding MGP_CASTEiJ_T0092460.1 MGP_CASTEiJ_G0033791.1 mouse_genomes_project 9 49497271 49517686 - Dixdc1 protein_coding retained_intron MGP_CASTEiJ_T0092461.1 MGP_CASTEiJ_G0033791.1 mouse_genomes_project 9 49507867 49526915 - MGP_CASTEiJ_P0092461 Dixdc1 protein_coding protein_coding MGP_CASTEiJ_T0092462.1 MGP_CASTEiJ_G0033791.1 mouse_genomes_project 9 49523227 49528687 - Dixdc1 protein_coding processed_transcript MGP_CASTEiJ_T0092463.1 MGP_CASTEiJ_G0033791.1 mouse_genomes_project 9 49526583 49531708 - Dixdc1 protein_coding retained_intron MGP_CASTEiJ_T0092464.1 MGP_CASTEiJ_G0033791.1 mouse_genomes_project 9 49526761 49530844 - Dixdc1 protein_coding processed_transcript MGP_CASTEiJ_T0092465.1 MGP_CASTEiJ_G0033791.1 mouse_genomes_project 9 49543837 49573701 - MGP_CASTEiJ_P0092465 Dixdc1 protein_coding protein_coding MGP_CASTEiJ_T0092466.1 MGP_CASTEiJ_G0033791.1 mouse_genomes_project 9 49544341 49562501 - MGP_CASTEiJ_P0092466 Dixdc1 protein_coding protein_coding MGP_CASTEiJ_T0092712.1 MGP_CASTEiJ_G0033869.1 mouse_genomes_project 9 56649125 56681752 - MGP_CASTEiJ_P0092712 Scamp5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0008991.1 MGP_CASTEiJ_G0007242.1 mouse_genomes_project 9 33857190 33858534 + lincRNA lincRNA MGP_CASTEiJ_T0008992.1 MGP_CASTEiJ_G0007242.1 mouse_genomes_project 9 33857242 33858575 + lincRNA lincRNA MGP_CASTEiJ_T0092194.1 MGP_CASTEiJ_G0033704.1 mouse_genomes_project 9 42740017 42754388 - MGP_CASTEiJ_P0092194 Hinfp protein_coding protein_coding MGP_CASTEiJ_T0091635.1 MGP_CASTEiJ_G0033474.1 mouse_genomes_project 9 19367494 19372159 - MGP_CASTEiJ_P0091635 Epor protein_coding protein_coding MGP_CASTEiJ_T0015486.1 MGP_CASTEiJ_G0013649.1 mouse_genomes_project 9 85770059 85770500 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098671.1 MGP_CASTEiJ_G0035602.1 mouse_genomes_project 9 34927347 34927456 + n-R5s82 rRNA rRNA MGP_CASTEiJ_T0002363.1 MGP_CASTEiJ_G0002280.1 mouse_genomes_project 9 102566192 102570368 - TEC TEC MGP_CASTEiJ_T0011413.1 MGP_CASTEiJ_G0009601.1 mouse_genomes_project 9 99058824 99058931 - Gm27919 misc_RNA misc_RNA MGP_CASTEiJ_T0092221.1 MGP_CASTEiJ_G0033720.1 mouse_genomes_project 9 43164398 43178879 + MGP_CASTEiJ_P0092221 Treh protein_coding protein_coding MGP_CASTEiJ_T0092222.1 MGP_CASTEiJ_G0033720.1 mouse_genomes_project 9 43164400 43178878 + MGP_CASTEiJ_P0092222 Treh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092223.1 MGP_CASTEiJ_G0033720.1 mouse_genomes_project 9 43164414 43178879 + MGP_CASTEiJ_P0092223 Treh protein_coding protein_coding MGP_CASTEiJ_T0092224.1 MGP_CASTEiJ_G0033720.1 mouse_genomes_project 9 43175861 43178592 + MGP_CASTEiJ_P0092224 Treh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0015524.1 MGP_CASTEiJ_G0013687.1 mouse_genomes_project 9 100840517 100840781 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100108.1 MGP_CASTEiJ_G0037021.1 mouse_genomes_project 9 17472136 17472289 + Gm25914 snRNA snRNA MGP_CASTEiJ_T0095385.1 MGP_CASTEiJ_G0034412.1 mouse_genomes_project 9 121534057 121615254 - MGP_CASTEiJ_P0095385 Scn11a protein_coding protein_coding MGP_CASTEiJ_T0017801.1 MGP_CASTEiJ_G0015063.1 mouse_genomes_project 9 80380477 80380910 + Gm3211 processed_transcript processed_transcript MGP_CASTEiJ_T0100146.1 MGP_CASTEiJ_G0037059.1 mouse_genomes_project 9 76224019 76224103 - Gm25300 snRNA snRNA MGP_CASTEiJ_T0011422.1 MGP_CASTEiJ_G0009610.1 mouse_genomes_project 9 124715377 124715645 + Gm25341 misc_RNA misc_RNA MGP_CASTEiJ_T0094378.1 MGP_CASTEiJ_G0034238.1 mouse_genomes_project 9 107665502 107727530 + MGP_CASTEiJ_P0094378 Vprbp protein_coding protein_coding MGP_CASTEiJ_T0094379.1 MGP_CASTEiJ_G0034238.1 mouse_genomes_project 9 107675967 107728991 + MGP_CASTEiJ_P0094379 Vprbp protein_coding protein_coding MGP_CASTEiJ_T0094381.1 MGP_CASTEiJ_G0034238.1 mouse_genomes_project 9 107697353 107700848 + Vprbp protein_coding retained_intron MGP_CASTEiJ_T0094383.1 MGP_CASTEiJ_G0034238.1 mouse_genomes_project 9 107721786 107727696 + MGP_CASTEiJ_P0094383 Vprbp protein_coding protein_coding MGP_CASTEiJ_T0092448.1 MGP_CASTEiJ_G0033790.1 mouse_genomes_project 9 49463485 49490874 - MGP_CASTEiJ_P0092448 Dlat protein_coding protein_coding MGP_CASTEiJ_T0092449.1 MGP_CASTEiJ_G0033790.1 mouse_genomes_project 9 49465374 49474300 - Dlat protein_coding retained_intron MGP_CASTEiJ_T0092450.1 MGP_CASTEiJ_G0033790.1 mouse_genomes_project 9 49466305 49476129 - Dlat protein_coding processed_transcript MGP_CASTEiJ_T0092451.1 MGP_CASTEiJ_G0033790.1 mouse_genomes_project 9 49468761 49474001 - Dlat protein_coding retained_intron MGP_CASTEiJ_T0092452.1 MGP_CASTEiJ_G0033790.1 mouse_genomes_project 9 49469079 49477578 - Dlat protein_coding processed_transcript MGP_CASTEiJ_T0092453.1 MGP_CASTEiJ_G0033790.1 mouse_genomes_project 9 49473971 49479838 - Dlat protein_coding retained_intron MGP_CASTEiJ_T0005269.1 MGP_CASTEiJ_G0004477.1 mouse_genomes_project 9 6250506 6276377 + Gm16833 antisense antisense MGP_CASTEiJ_T0005270.1 MGP_CASTEiJ_G0004477.1 mouse_genomes_project 9 6276176 6276377 + Gm16833 antisense antisense MGP_CASTEiJ_T0092089.1 MGP_CASTEiJ_G0033672.1 mouse_genomes_project 9 38659839 38660483 + MGP_CASTEiJ_P0092089 Gm9493 protein_coding protein_coding MGP_CASTEiJ_T0015466.1 MGP_CASTEiJ_G0013629.1 mouse_genomes_project 9 76956381 76957135 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093463.1 MGP_CASTEiJ_G0034053.1 mouse_genomes_project 9 76786143 76843216 - MGP_CASTEiJ_P0093463 Fam83b protein_coding unknown_likely_coding MGP_CASTEiJ_T0091493.1 MGP_CASTEiJ_G0033424.1 mouse_genomes_project 9 17790634 17822729 - MGP_CASTEiJ_P0091493 Zfp266 protein_coding protein_coding MGP_CASTEiJ_T0091494.1 MGP_CASTEiJ_G0033424.1 mouse_genomes_project 9 17794597 17822720 - MGP_CASTEiJ_P0091494 Zfp266 protein_coding protein_coding MGP_CASTEiJ_T0093848.1 MGP_CASTEiJ_G0034134.1 mouse_genomes_project 9 95958249 96055871 - MGP_CASTEiJ_P0093848 Pls1 protein_coding protein_coding MGP_CASTEiJ_T0093849.1 MGP_CASTEiJ_G0034134.1 mouse_genomes_project 9 95991485 96027733 - MGP_CASTEiJ_P0093849 Pls1 protein_coding protein_coding MGP_CASTEiJ_T0093850.1 MGP_CASTEiJ_G0034134.1 mouse_genomes_project 9 95992848 96055896 - Pls1 protein_coding processed_transcript MGP_CASTEiJ_T0094903.1 MGP_CASTEiJ_G0034313.1 mouse_genomes_project 9 109918891 109920046 + MGP_CASTEiJ_P0094903 Ucn2 protein_coding protein_coding MGP_CASTEiJ_T0002298.1 MGP_CASTEiJ_G0002216.1 mouse_genomes_project 9 72416106 72418116 + TEC TEC MGP_CASTEiJ_T0094583.1 MGP_CASTEiJ_G0034265.1 mouse_genomes_project 9 108786219 108801183 + MGP_CASTEiJ_P0094583 Mon1a protein_coding protein_coding MGP_CASTEiJ_T0094584.1 MGP_CASTEiJ_G0034265.1 mouse_genomes_project 9 108786250 108801188 + MGP_CASTEiJ_P0094584 Mon1a protein_coding protein_coding MGP_CASTEiJ_T0091290.1 MGP_CASTEiJ_G0033344.1 mouse_genomes_project 9 5128960 5187360 - MGP_CASTEiJ_P0091290 Cep126 protein_coding protein_coding MGP_CASTEiJ_T0091291.1 MGP_CASTEiJ_G0033344.1 mouse_genomes_project 9 5130166 5187276 - MGP_CASTEiJ_P0091291 Cep126 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091782.1 MGP_CASTEiJ_G0033526.1 mouse_genomes_project 9 29893459 30076129 + MGP_CASTEiJ_P0091782 Arhgap32 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091783.1 MGP_CASTEiJ_G0033526.1 mouse_genomes_project 9 29918220 30083335 + MGP_CASTEiJ_P0091783 Arhgap32 protein_coding protein_coding MGP_CASTEiJ_T0091784.1 MGP_CASTEiJ_G0033526.1 mouse_genomes_project 9 29932367 29990080 + MGP_CASTEiJ_P0091784 Arhgap32 protein_coding protein_coding MGP_CASTEiJ_T0091785.1 MGP_CASTEiJ_G0033526.1 mouse_genomes_project 9 29990024 30019890 + Arhgap32 protein_coding retained_intron MGP_CASTEiJ_T0091786.1 MGP_CASTEiJ_G0033526.1 mouse_genomes_project 9 30018974 30076043 + MGP_CASTEiJ_P0091786 Arhgap32 protein_coding protein_coding MGP_CASTEiJ_T0091787.1 MGP_CASTEiJ_G0033526.1 mouse_genomes_project 9 30036699 30079070 + MGP_CASTEiJ_P0091787 Arhgap32 protein_coding protein_coding MGP_CASTEiJ_T0091788.1 MGP_CASTEiJ_G0033526.1 mouse_genomes_project 9 30037042 30059515 + MGP_CASTEiJ_P0091788 Arhgap32 protein_coding protein_coding MGP_CASTEiJ_T0091789.1 MGP_CASTEiJ_G0033526.1 mouse_genomes_project 9 30058695 30063020 + Arhgap32 protein_coding retained_intron MGP_CASTEiJ_T0093818.1 MGP_CASTEiJ_G0034126.1 mouse_genomes_project 9 92676355 92743993 + MGP_CASTEiJ_P0093818 Plod2 protein_coding protein_coding MGP_CASTEiJ_T0093819.1 MGP_CASTEiJ_G0034126.1 mouse_genomes_project 9 92676396 92743985 + MGP_CASTEiJ_P0093819 Plod2 protein_coding protein_coding MGP_CASTEiJ_T0093820.1 MGP_CASTEiJ_G0034126.1 mouse_genomes_project 9 92710215 92727150 + Plod2 protein_coding retained_intron MGP_CASTEiJ_T0093821.1 MGP_CASTEiJ_G0034126.1 mouse_genomes_project 9 92730826 92736521 + Plod2 protein_coding retained_intron MGP_CASTEiJ_T0093822.1 MGP_CASTEiJ_G0034126.1 mouse_genomes_project 9 92736791 92738066 + Plod2 protein_coding retained_intron MGP_CASTEiJ_T0092505.1 MGP_CASTEiJ_G0033799.1 mouse_genomes_project 9 49731383 49845328 - MGP_CASTEiJ_P0092505 Sik2 protein_coding protein_coding MGP_CASTEiJ_T0092506.1 MGP_CASTEiJ_G0033799.1 mouse_genomes_project 9 49731383 49845228 - MGP_CASTEiJ_P0092506 Sik2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092507.1 MGP_CASTEiJ_G0033799.1 mouse_genomes_project 9 49731383 49845191 - MGP_CASTEiJ_P0092507 Sik2 protein_coding protein_coding MGP_CASTEiJ_T0092508.1 MGP_CASTEiJ_G0033799.1 mouse_genomes_project 9 49731383 49845191 - MGP_CASTEiJ_P0092508 Sik2 protein_coding protein_coding MGP_CASTEiJ_T0092509.1 MGP_CASTEiJ_G0033799.1 mouse_genomes_project 9 49749476 49845154 - MGP_CASTEiJ_P0092509 Sik2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092510.1 MGP_CASTEiJ_G0033799.1 mouse_genomes_project 9 49768382 49845255 - Sik2 protein_coding retained_intron MGP_CASTEiJ_T0092511.1 MGP_CASTEiJ_G0033799.1 mouse_genomes_project 9 49769918 49845281 - Sik2 protein_coding processed_transcript MGP_CASTEiJ_T0092512.1 MGP_CASTEiJ_G0033799.1 mouse_genomes_project 9 49831851 49845266 - Sik2 protein_coding retained_intron MGP_CASTEiJ_T0015431.1 MGP_CASTEiJ_G0013594.1 mouse_genomes_project 9 34444979 34445371 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099022.1 MGP_CASTEiJ_G0035941.1 mouse_genomes_project 9 25820053 25821404 + Gm15606 sense_intronic sense_intronic MGP_CASTEiJ_T0099023.1 MGP_CASTEiJ_G0035941.1 mouse_genomes_project 9 25820106 25821683 + Gm15606 sense_intronic sense_intronic MGP_CASTEiJ_T0092139.1 MGP_CASTEiJ_G0033692.1 mouse_genomes_project 9 42231238 42233932 + MGP_CASTEiJ_P0092139 Gm3898 protein_coding protein_coding MGP_CASTEiJ_T0011401.1 MGP_CASTEiJ_G0009589.1 mouse_genomes_project 9 15744491 15744797 + Gm25295 misc_RNA misc_RNA MGP_CASTEiJ_T0101411.1 MGP_CASTEiJ_G0038324.1 mouse_genomes_project 9 108014030 108014160 + Gm23595 snoRNA snoRNA MGP_CASTEiJ_T0015411.1 MGP_CASTEiJ_G0013574.1 mouse_genomes_project 9 126983 127373 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092947.1 MGP_CASTEiJ_G0033931.1 mouse_genomes_project 9 62684708 62730876 - MGP_CASTEiJ_P0092947 Skor1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092948.1 MGP_CASTEiJ_G0033931.1 mouse_genomes_project 9 62719975 62730793 - MGP_CASTEiJ_P0092948 Skor1 protein_coding protein_coding MGP_CASTEiJ_T0092949.1 MGP_CASTEiJ_G0033931.1 mouse_genomes_project 9 62719975 62728843 - MGP_CASTEiJ_P0092949 Skor1 protein_coding protein_coding MGP_CASTEiJ_T0092950.1 MGP_CASTEiJ_G0033931.1 mouse_genomes_project 9 62719981 62728812 - MGP_CASTEiJ_P0092950 Skor1 protein_coding protein_coding MGP_CASTEiJ_T0093961.1 MGP_CASTEiJ_G0034155.1 mouse_genomes_project 9 99215707 99216608 + MGP_CASTEiJ_P0093961 protein_coding protein_coding MGP_CASTEiJ_T0092059.1 MGP_CASTEiJ_G0033662.1 mouse_genomes_project 9 38190898 38191892 + MGP_CASTEiJ_P0092059 Olfr981 protein_coding protein_coding MGP_CASTEiJ_T0092029.1 MGP_CASTEiJ_G0033638.1 mouse_genomes_project 9 37676904 37677840 - MGP_CASTEiJ_P0092029 Olfr957 protein_coding protein_coding MGP_CASTEiJ_T0098670.1 MGP_CASTEiJ_G0035601.1 mouse_genomes_project 9 33417702 33417810 - Gm24188 rRNA rRNA MGP_CASTEiJ_T0092043.1 MGP_CASTEiJ_G0033646.1 mouse_genomes_project 9 37878715 37879768 - MGP_CASTEiJ_P0092043 Olfr149 protein_coding protein_coding MGP_CASTEiJ_T0008982.1 MGP_CASTEiJ_G0007233.1 mouse_genomes_project 9 24767610 24768045 - Gm29172 lincRNA lincRNA MGP_CASTEiJ_T0101668.1 MGP_CASTEiJ_G0038502.1 mouse_genomes_project 9 38659823 38660470 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101669.1 MGP_CASTEiJ_G0038502.1 mouse_genomes_project 9 38659858 38660440 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0091548.1 MGP_CASTEiJ_G0033445.1 mouse_genomes_project 9 18444216 18470508 - MGP_CASTEiJ_P0091548 Tyk2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091549.1 MGP_CASTEiJ_G0033445.1 mouse_genomes_project 9 18444221 18466647 - MGP_CASTEiJ_P0091549 Tyk2 protein_coding protein_coding MGP_CASTEiJ_T0008996.1 MGP_CASTEiJ_G0007245.1 mouse_genomes_project 9 34537703 34562023 - 1700027I24Rik lincRNA lincRNA MGP_CASTEiJ_T0002383.1 MGP_CASTEiJ_G0002300.1 mouse_genomes_project 9 109105663 109106477 - TEC TEC MGP_CASTEiJ_T0100159.1 MGP_CASTEiJ_G0037072.1 mouse_genomes_project 9 102893984 102894087 + Gm22894 snRNA snRNA MGP_CASTEiJ_T0101369.1 MGP_CASTEiJ_G0038282.1 mouse_genomes_project 9 36467810 36467934 + Gm23271 snoRNA snoRNA MGP_CASTEiJ_T0094365.1 MGP_CASTEiJ_G0034236.1 mouse_genomes_project 9 107485596 107512696 - MGP_CASTEiJ_P0094365 Tex264 protein_coding protein_coding MGP_CASTEiJ_T0094366.1 MGP_CASTEiJ_G0034236.1 mouse_genomes_project 9 107485596 107512555 - MGP_CASTEiJ_P0094366 Tex264 protein_coding protein_coding MGP_CASTEiJ_T0094367.1 MGP_CASTEiJ_G0034236.1 mouse_genomes_project 9 107485602 107512788 - MGP_CASTEiJ_P0094367 Tex264 protein_coding protein_coding MGP_CASTEiJ_T0094368.1 MGP_CASTEiJ_G0034236.1 mouse_genomes_project 9 107485842 107490826 - Tex264 protein_coding processed_transcript MGP_CASTEiJ_T0094369.1 MGP_CASTEiJ_G0034236.1 mouse_genomes_project 9 107485898 107512792 - Tex264 protein_coding processed_transcript MGP_CASTEiJ_T0094370.1 MGP_CASTEiJ_G0034236.1 mouse_genomes_project 9 107486087 107512800 - Tex264 protein_coding processed_transcript MGP_CASTEiJ_T0094371.1 MGP_CASTEiJ_G0034236.1 mouse_genomes_project 9 107489249 107512782 - Tex264 protein_coding processed_transcript MGP_CASTEiJ_T0094372.1 MGP_CASTEiJ_G0034236.1 mouse_genomes_project 9 107504877 107512178 - Tex264 protein_coding processed_transcript MGP_CASTEiJ_T0094373.1 MGP_CASTEiJ_G0034236.1 mouse_genomes_project 9 107511804 107512776 - Tex264 protein_coding processed_transcript MGP_CASTEiJ_T0094963.1 MGP_CASTEiJ_G0034326.1 mouse_genomes_project 9 110806623 110817285 + MGP_CASTEiJ_P0094963 Spink8 protein_coding protein_coding MGP_CASTEiJ_T0094964.1 MGP_CASTEiJ_G0034326.1 mouse_genomes_project 9 110811928 110823400 + MGP_CASTEiJ_P0094964 Spink8 protein_coding protein_coding MGP_CASTEiJ_T0094965.1 MGP_CASTEiJ_G0034326.1 mouse_genomes_project 9 110812011 110823395 + MGP_CASTEiJ_P0094965 Spink8 protein_coding protein_coding MGP_CASTEiJ_T0093748.1 MGP_CASTEiJ_G0034113.1 mouse_genomes_project 9 89797478 89810762 - MGP_CASTEiJ_P0093748 Ankrd34c protein_coding protein_coding MGP_CASTEiJ_T0093749.1 MGP_CASTEiJ_G0034113.1 mouse_genomes_project 9 89800737 89810732 - MGP_CASTEiJ_P0093749 Ankrd34c protein_coding protein_coding MGP_CASTEiJ_T0009098.1 MGP_CASTEiJ_G0007327.1 mouse_genomes_project 9 109512193 109513825 + 4833445I07Rik lincRNA lincRNA MGP_CASTEiJ_T0009099.1 MGP_CASTEiJ_G0007327.1 mouse_genomes_project 9 109512553 109513425 + 4833445I07Rik lincRNA lincRNA MGP_CASTEiJ_T0091875.1 MGP_CASTEiJ_G0033555.1 mouse_genomes_project 9 34470535 34473020 - MGP_CASTEiJ_P0091875 protein_coding protein_coding MGP_CASTEiJ_T0092330.1 MGP_CASTEiJ_G0033750.1 mouse_genomes_project 9 44492127 44511252 - MGP_CASTEiJ_P0092330 Sidt2 protein_coding protein_coding MGP_CASTEiJ_T0092331.1 MGP_CASTEiJ_G0033750.1 mouse_genomes_project 9 44492145 44510992 - MGP_CASTEiJ_P0092331 Sidt2 protein_coding protein_coding MGP_CASTEiJ_T0092332.1 MGP_CASTEiJ_G0033750.1 mouse_genomes_project 9 44493575 44495286 - MGP_CASTEiJ_P0092332 Sidt2 protein_coding protein_coding MGP_CASTEiJ_T0092333.1 MGP_CASTEiJ_G0033750.1 mouse_genomes_project 9 44496238 44498528 - Sidt2 protein_coding retained_intron MGP_CASTEiJ_T0092334.1 MGP_CASTEiJ_G0033750.1 mouse_genomes_project 9 44496666 44498929 - Sidt2 protein_coding retained_intron MGP_CASTEiJ_T0092335.1 MGP_CASTEiJ_G0033750.1 mouse_genomes_project 9 44497488 44500683 - MGP_CASTEiJ_P0092335 Sidt2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092336.1 MGP_CASTEiJ_G0033750.1 mouse_genomes_project 9 44498270 44501684 - Sidt2 protein_coding retained_intron MGP_CASTEiJ_T0092337.1 MGP_CASTEiJ_G0033750.1 mouse_genomes_project 9 44499098 44502148 - MGP_CASTEiJ_P0092337 Sidt2 protein_coding protein_coding MGP_CASTEiJ_T0092338.1 MGP_CASTEiJ_G0033750.1 mouse_genomes_project 9 44499186 44511186 - MGP_CASTEiJ_P0092338 Sidt2 protein_coding protein_coding MGP_CASTEiJ_T0092339.1 MGP_CASTEiJ_G0033750.1 mouse_genomes_project 9 44499248 44507843 - MGP_CASTEiJ_P0092339 Sidt2 protein_coding protein_coding MGP_CASTEiJ_T0092340.1 MGP_CASTEiJ_G0033750.1 mouse_genomes_project 9 44499564 44507784 - MGP_CASTEiJ_P0092340 Sidt2 protein_coding protein_coding MGP_CASTEiJ_T0092341.1 MGP_CASTEiJ_G0033750.1 mouse_genomes_project 9 44499601 44508016 - MGP_CASTEiJ_P0092341 Sidt2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092342.1 MGP_CASTEiJ_G0033750.1 mouse_genomes_project 9 44499636 44502200 - MGP_CASTEiJ_P0092342 Sidt2 protein_coding protein_coding MGP_CASTEiJ_T0092343.1 MGP_CASTEiJ_G0033750.1 mouse_genomes_project 9 44508453 44511239 - Sidt2 protein_coding retained_intron MGP_CASTEiJ_T0015513.1 MGP_CASTEiJ_G0013676.1 mouse_genomes_project 9 95878057 95878644 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0094435.1 MGP_CASTEiJ_G0034248.1 mouse_genomes_project 9 108399930 108402790 - MGP_CASTEiJ_P0094435 Cyb561d2 protein_coding protein_coding MGP_CASTEiJ_T0094436.1 MGP_CASTEiJ_G0034248.1 mouse_genomes_project 9 108400498 108403118 - MGP_CASTEiJ_P0094436 Cyb561d2 protein_coding protein_coding MGP_CASTEiJ_T0094437.1 MGP_CASTEiJ_G0034248.1 mouse_genomes_project 9 108400504 108402449 - MGP_CASTEiJ_P0094437 Cyb561d2 protein_coding protein_coding MGP_CASTEiJ_T0094438.1 MGP_CASTEiJ_G0034248.1 mouse_genomes_project 9 108400800 108403049 - Cyb561d2 protein_coding processed_transcript MGP_CASTEiJ_T0094439.1 MGP_CASTEiJ_G0034248.1 mouse_genomes_project 9 108400965 108403052 - MGP_CASTEiJ_P0094439 Cyb561d2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0002370.1 MGP_CASTEiJ_G0002287.1 mouse_genomes_project 9 104145673 104147820 - TEC TEC MGP_CASTEiJ_T0093962.1 MGP_CASTEiJ_G0034156.1 mouse_genomes_project 9 99268649 99270153 + MGP_CASTEiJ_P0093962 7420426K07Rik protein_coding protein_coding MGP_CASTEiJ_T0094157.1 MGP_CASTEiJ_G0034199.1 mouse_genomes_project 9 104686002 104703230 - MGP_CASTEiJ_P0094157 Uba5 protein_coding protein_coding MGP_CASTEiJ_T0094158.1 MGP_CASTEiJ_G0034199.1 mouse_genomes_project 9 104686912 104695959 - MGP_CASTEiJ_P0094158 Uba5 protein_coding protein_coding MGP_CASTEiJ_T0094159.1 MGP_CASTEiJ_G0034199.1 mouse_genomes_project 9 104688792 104703159 - MGP_CASTEiJ_P0094159 Uba5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094160.1 MGP_CASTEiJ_G0034199.1 mouse_genomes_project 9 104696539 104700490 - Uba5 protein_coding retained_intron MGP_CASTEiJ_T0093518.1 MGP_CASTEiJ_G0034068.1 mouse_genomes_project 9 78773600 78806075 + MGP_CASTEiJ_P0093518 Ddx43 protein_coding protein_coding MGP_CASTEiJ_T0015519.1 MGP_CASTEiJ_G0013682.1 mouse_genomes_project 9 97530978 97532815 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091985.1 MGP_CASTEiJ_G0033600.1 mouse_genomes_project 9 36331762 36332713 + MGP_CASTEiJ_P0091985 Olfr251 protein_coding protein_coding MGP_CASTEiJ_T0015547.1 MGP_CASTEiJ_G0013710.1 mouse_genomes_project 9 118993178 118994136 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011409.1 MGP_CASTEiJ_G0009597.1 mouse_genomes_project 9 78571489 78571820 - Rn7sk misc_RNA misc_RNA MGP_CASTEiJ_T0101376.1 MGP_CASTEiJ_G0038289.1 mouse_genomes_project 9 43230110 43230245 - Gm24166 snoRNA snoRNA MGP_CASTEiJ_T0010733.1 MGP_CASTEiJ_G0008921.1 mouse_genomes_project 9 18371213 18371291 - Mir1900 miRNA miRNA MGP_CASTEiJ_T0015439.1 MGP_CASTEiJ_G0013602.1 mouse_genomes_project 9 56381857 56382333 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095133.1 MGP_CASTEiJ_G0034352.1 mouse_genomes_project 9 111937894 111954438 - MGP_CASTEiJ_P0095133 Tmie protein_coding unknown_likely_coding MGP_CASTEiJ_T0095134.1 MGP_CASTEiJ_G0034352.1 mouse_genomes_project 9 111947926 111953517 - Tmie protein_coding processed_transcript MGP_CASTEiJ_T0095135.1 MGP_CASTEiJ_G0034352.1 mouse_genomes_project 9 111947974 111948525 - Tmie protein_coding retained_intron MGP_CASTEiJ_T0091659.1 MGP_CASTEiJ_G0033486.1 mouse_genomes_project 9 19675852 19693563 + MGP_CASTEiJ_P0091659 Zfp809 protein_coding protein_coding MGP_CASTEiJ_T0094704.1 MGP_CASTEiJ_G0034286.1 mouse_genomes_project 9 109234508 109239751 + Rhoa protein_coding retained_intron MGP_CASTEiJ_T0094705.1 MGP_CASTEiJ_G0034286.1 mouse_genomes_project 9 109234866 109264804 + MGP_CASTEiJ_P0094705 Rhoa protein_coding protein_coding MGP_CASTEiJ_T0094706.1 MGP_CASTEiJ_G0034286.1 mouse_genomes_project 9 109234898 109259041 + MGP_CASTEiJ_P0094706 Rhoa protein_coding protein_coding MGP_CASTEiJ_T0094707.1 MGP_CASTEiJ_G0034286.1 mouse_genomes_project 9 109258684 109264821 + Rhoa protein_coding retained_intron MGP_CASTEiJ_T0010764.1 MGP_CASTEiJ_G0008952.1 mouse_genomes_project 9 67630068 67630132 - Mir7241 miRNA miRNA MGP_CASTEiJ_T0092120.1 MGP_CASTEiJ_G0033683.1 mouse_genomes_project 9 40745930 40807123 - MGP_CASTEiJ_P0092120 Tbcel protein_coding protein_coding MGP_CASTEiJ_T0092121.1 MGP_CASTEiJ_G0033683.1 mouse_genomes_project 9 40745930 40792507 - MGP_CASTEiJ_P0092121 Tbcel protein_coding protein_coding MGP_CASTEiJ_T0092122.1 MGP_CASTEiJ_G0033683.1 mouse_genomes_project 9 40747027 40796397 - MGP_CASTEiJ_P0092122 Tbcel protein_coding protein_coding MGP_CASTEiJ_T0092123.1 MGP_CASTEiJ_G0033683.1 mouse_genomes_project 9 40747598 40761822 - Tbcel protein_coding processed_transcript MGP_CASTEiJ_T0092124.1 MGP_CASTEiJ_G0033683.1 mouse_genomes_project 9 40749304 40807130 - MGP_CASTEiJ_P0092124 Tbcel protein_coding protein_coding MGP_CASTEiJ_T0092125.1 MGP_CASTEiJ_G0033683.1 mouse_genomes_project 9 40749417 40807083 - MGP_CASTEiJ_P0092125 Tbcel protein_coding protein_coding MGP_CASTEiJ_T0092126.1 MGP_CASTEiJ_G0033683.1 mouse_genomes_project 9 40783533 40843719 - MGP_CASTEiJ_P0092126 Tbcel protein_coding protein_coding MGP_CASTEiJ_T0095293.1 MGP_CASTEiJ_G0034390.1 mouse_genomes_project 9 118109912 118824312 - MGP_CASTEiJ_P0095293 Rbms3 protein_coding protein_coding MGP_CASTEiJ_T0095294.1 MGP_CASTEiJ_G0034390.1 mouse_genomes_project 9 118114466 118824328 - MGP_CASTEiJ_P0095294 Rbms3 protein_coding protein_coding MGP_CASTEiJ_T0095295.1 MGP_CASTEiJ_G0034390.1 mouse_genomes_project 9 118114749 118381381 - MGP_CASTEiJ_P0095295 Rbms3 protein_coding protein_coding MGP_CASTEiJ_T0095296.1 MGP_CASTEiJ_G0034390.1 mouse_genomes_project 9 118115185 119232764 - MGP_CASTEiJ_P0095296 Rbms3 protein_coding protein_coding MGP_CASTEiJ_T0095297.1 MGP_CASTEiJ_G0034390.1 mouse_genomes_project 9 118115185 118823974 - MGP_CASTEiJ_P0095297 Rbms3 protein_coding protein_coding MGP_CASTEiJ_T0095298.1 MGP_CASTEiJ_G0034390.1 mouse_genomes_project 9 118115186 118823965 - MGP_CASTEiJ_P0095298 Rbms3 protein_coding protein_coding MGP_CASTEiJ_T0095299.1 MGP_CASTEiJ_G0034390.1 mouse_genomes_project 9 118116750 118824332 - MGP_CASTEiJ_P0095299 Rbms3 protein_coding protein_coding MGP_CASTEiJ_T0095300.1 MGP_CASTEiJ_G0034390.1 mouse_genomes_project 9 118121116 118381394 - MGP_CASTEiJ_P0095300 Rbms3 protein_coding protein_coding MGP_CASTEiJ_T0095301.1 MGP_CASTEiJ_G0034390.1 mouse_genomes_project 9 118224501 118824331 - Rbms3 protein_coding retained_intron MGP_CASTEiJ_T0095302.1 MGP_CASTEiJ_G0034390.1 mouse_genomes_project 9 118364036 118823655 - MGP_CASTEiJ_P0095302 Rbms3 protein_coding protein_coding MGP_CASTEiJ_T0095303.1 MGP_CASTEiJ_G0034390.1 mouse_genomes_project 9 118406251 118824328 - Rbms3 protein_coding processed_transcript MGP_CASTEiJ_T0095304.1 MGP_CASTEiJ_G0034390.1 mouse_genomes_project 9 118510485 118823451 - Rbms3 protein_coding processed_transcript MGP_CASTEiJ_T0095489.1 MGP_CASTEiJ_G0034446.1 mouse_genomes_project 9 123902945 123917202 - MGP_CASTEiJ_P0095489 Pomgnt2 protein_coding protein_coding MGP_CASTEiJ_T0010784.1 MGP_CASTEiJ_G0008972.1 mouse_genomes_project 9 109512979 109513053 + Mir191 miRNA miRNA MGP_CASTEiJ_T0092888.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60821083 60867298 + MGP_CASTEiJ_P0092888 Tle3 protein_coding protein_coding MGP_CASTEiJ_T0092889.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60821100 60866706 + MGP_CASTEiJ_P0092889 Tle3 protein_coding protein_coding MGP_CASTEiJ_T0092890.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60821576 60867288 + MGP_CASTEiJ_P0092890 Tle3 protein_coding protein_coding MGP_CASTEiJ_T0092891.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60822078 60869697 + MGP_CASTEiJ_P0092891 Tle3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092892.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60822099 60858155 + MGP_CASTEiJ_P0092892 Tle3 protein_coding protein_coding MGP_CASTEiJ_T0092893.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60822103 60866638 + MGP_CASTEiJ_P0092893 Tle3 protein_coding protein_coding MGP_CASTEiJ_T0092894.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60822134 60856242 + MGP_CASTEiJ_P0092894 Tle3 protein_coding protein_coding MGP_CASTEiJ_T0092895.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60822135 60867291 + MGP_CASTEiJ_P0092895 Tle3 protein_coding protein_coding MGP_CASTEiJ_T0092896.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60822156 60865526 + MGP_CASTEiJ_P0092896 Tle3 protein_coding protein_coding MGP_CASTEiJ_T0092897.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60822156 60865526 + MGP_CASTEiJ_P0092897 Tle3 protein_coding protein_coding MGP_CASTEiJ_T0092898.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60822200 60850707 + MGP_CASTEiJ_P0092898 Tle3 protein_coding protein_coding MGP_CASTEiJ_T0092899.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60822232 60865786 + MGP_CASTEiJ_P0092899 Tle3 protein_coding protein_coding MGP_CASTEiJ_T0092900.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60822390 60865786 + MGP_CASTEiJ_P0092900 Tle3 protein_coding protein_coding MGP_CASTEiJ_T0092901.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60823048 60843452 + MGP_CASTEiJ_P0092901 Tle3 protein_coding protein_coding MGP_CASTEiJ_T0092902.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60824246 60865786 + MGP_CASTEiJ_P0092902 Tle3 protein_coding protein_coding MGP_CASTEiJ_T0092903.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60850673 60858924 + Tle3 protein_coding processed_transcript MGP_CASTEiJ_T0092904.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60851275 60866636 + Tle3 protein_coding retained_intron MGP_CASTEiJ_T0092905.1 MGP_CASTEiJ_G0033918.1 mouse_genomes_project 9 60858726 60867220 + Tle3 protein_coding processed_transcript MGP_CASTEiJ_T0094956.1 MGP_CASTEiJ_G0034322.1 mouse_genomes_project 9 110077959 110102153 - MGP_CASTEiJ_P0094956 protein_coding protein_coding MGP_CASTEiJ_T0094957.1 MGP_CASTEiJ_G0034322.1 mouse_genomes_project 9 110086650 110102152 - MGP_CASTEiJ_P0094957 protein_coding protein_coding MGP_CASTEiJ_T0092539.1 MGP_CASTEiJ_G0033814.1 mouse_genomes_project 9 52331569 52349496 + MGP_CASTEiJ_P0092539 Kdelc2 protein_coding protein_coding MGP_CASTEiJ_T0094672.1 MGP_CASTEiJ_G0034279.1 mouse_genomes_project 9 108985969 108990537 + MGP_CASTEiJ_P0094672 Mst1 protein_coding protein_coding MGP_CASTEiJ_T0094673.1 MGP_CASTEiJ_G0034279.1 mouse_genomes_project 9 108985987 108990529 + MGP_CASTEiJ_P0094673 Mst1 protein_coding protein_coding MGP_CASTEiJ_T0094674.1 MGP_CASTEiJ_G0034279.1 mouse_genomes_project 9 108986016 108987848 + MGP_CASTEiJ_P0094674 Mst1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094675.1 MGP_CASTEiJ_G0034279.1 mouse_genomes_project 9 108989838 108990532 + MGP_CASTEiJ_P0094675 Mst1 protein_coding protein_coding MGP_CASTEiJ_T0091988.1 MGP_CASTEiJ_G0033603.1 mouse_genomes_project 9 36403760 36404813 + MGP_CASTEiJ_P0091988 Olfr902 protein_coding protein_coding MGP_CASTEiJ_T0093803.1 MGP_CASTEiJ_G0034121.1 mouse_genomes_project 9 92308839 92336083 + MGP_CASTEiJ_P0093803 Plscr5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092396.1 MGP_CASTEiJ_G0033768.1 mouse_genomes_project 9 47307115 47314529 - Nnmt protein_coding processed_transcript MGP_CASTEiJ_T0092397.1 MGP_CASTEiJ_G0033768.1 mouse_genomes_project 9 47307115 47334764 - MGP_CASTEiJ_P0092397 Nnmt protein_coding protein_coding MGP_CASTEiJ_T0092398.1 MGP_CASTEiJ_G0033768.1 mouse_genomes_project 9 47307115 47334764 - MGP_CASTEiJ_P0092398 Nnmt protein_coding protein_coding MGP_CASTEiJ_T0092399.1 MGP_CASTEiJ_G0033768.1 mouse_genomes_project 9 47307129 47314603 - Nnmt protein_coding processed_transcript MGP_CASTEiJ_T0092400.1 MGP_CASTEiJ_G0033768.1 mouse_genomes_project 9 47321480 47334688 - Nnmt protein_coding retained_intron MGP_CASTEiJ_T0091966.1 MGP_CASTEiJ_G0033582.1 mouse_genomes_project 9 35857195 35858246 + MGP_CASTEiJ_P0091966 Olfr145 protein_coding protein_coding MGP_CASTEiJ_T0011405.1 MGP_CASTEiJ_G0009593.1 mouse_genomes_project 9 42823673 42823950 + Gm22141 misc_RNA misc_RNA MGP_CASTEiJ_T0095525.1 MGP_CASTEiJ_G0034460.1 mouse_genomes_project 9 124994395 125042621 - MGP_CASTEiJ_P0095525 Zdhhc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095526.1 MGP_CASTEiJ_G0034460.1 mouse_genomes_project 9 125002429 125042679 - MGP_CASTEiJ_P0095526 Zdhhc3 protein_coding protein_coding MGP_CASTEiJ_T0095527.1 MGP_CASTEiJ_G0034460.1 mouse_genomes_project 9 125005112 125042654 - MGP_CASTEiJ_P0095527 Zdhhc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095528.1 MGP_CASTEiJ_G0034460.1 mouse_genomes_project 9 125005780 125042640 - MGP_CASTEiJ_P0095528 Zdhhc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095529.1 MGP_CASTEiJ_G0034460.1 mouse_genomes_project 9 125006342 125042652 - MGP_CASTEiJ_P0095529 Zdhhc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095530.1 MGP_CASTEiJ_G0034460.1 mouse_genomes_project 9 125006602 125029792 - MGP_CASTEiJ_P0095530 Zdhhc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095531.1 MGP_CASTEiJ_G0034460.1 mouse_genomes_project 9 125008645 125042595 - MGP_CASTEiJ_P0095531 Zdhhc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095532.1 MGP_CASTEiJ_G0034460.1 mouse_genomes_project 9 125011169 125042678 - Zdhhc3 protein_coding retained_intron MGP_CASTEiJ_T0095533.1 MGP_CASTEiJ_G0034460.1 mouse_genomes_project 9 125012614 125042598 - MGP_CASTEiJ_P0095533 Zdhhc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095534.1 MGP_CASTEiJ_G0034460.1 mouse_genomes_project 9 125017252 125042652 - MGP_CASTEiJ_P0095534 Zdhhc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095535.1 MGP_CASTEiJ_G0034460.1 mouse_genomes_project 9 125029762 125042306 - MGP_CASTEiJ_P0095535 Zdhhc3 protein_coding protein_coding MGP_CASTEiJ_T0091854.1 MGP_CASTEiJ_G0033541.1 mouse_genomes_project 9 33478414 33486956 + Pus3 protein_coding retained_intron MGP_CASTEiJ_T0091855.1 MGP_CASTEiJ_G0033541.1 mouse_genomes_project 9 33479267 33487219 + MGP_CASTEiJ_P0091855 Pus3 protein_coding protein_coding MGP_CASTEiJ_T0091856.1 MGP_CASTEiJ_G0033541.1 mouse_genomes_project 9 33479273 33486661 + MGP_CASTEiJ_P0091856 Pus3 protein_coding protein_coding MGP_CASTEiJ_T0002327.1 MGP_CASTEiJ_G0002244.1 mouse_genomes_project 9 87434362 87437116 + TEC TEC MGP_CASTEiJ_T0015487.1 MGP_CASTEiJ_G0013650.1 mouse_genomes_project 9 86498523 86499312 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010780.1 MGP_CASTEiJ_G0008968.1 mouse_genomes_project 9 108072390 108072478 - Gm22238 miRNA miRNA MGP_CASTEiJ_T0005310.1 MGP_CASTEiJ_G0004504.1 mouse_genomes_project 9 56270030 56300767 - Man2c1os antisense antisense MGP_CASTEiJ_T0005311.1 MGP_CASTEiJ_G0004504.1 mouse_genomes_project 9 56297576 56300375 - Man2c1os antisense antisense MGP_CASTEiJ_T0005312.1 MGP_CASTEiJ_G0004504.1 mouse_genomes_project 9 56299452 56300721 - Man2c1os antisense antisense MGP_CASTEiJ_T0094256.1 MGP_CASTEiJ_G0034213.1 mouse_genomes_project 9 106614457 106725681 - MGP_CASTEiJ_P0094256 Col6a5 protein_coding protein_coding MGP_CASTEiJ_T0094257.1 MGP_CASTEiJ_G0034213.1 mouse_genomes_project 9 106615309 106714144 - MGP_CASTEiJ_P0094257 Col6a5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0094258.1 MGP_CASTEiJ_G0034213.1 mouse_genomes_project 9 106616997 106725681 - MGP_CASTEiJ_P0094258 Col6a5 protein_coding protein_coding MGP_CASTEiJ_T0094259.1 MGP_CASTEiJ_G0034213.1 mouse_genomes_project 9 106633903 106640014 - Col6a5 protein_coding retained_intron MGP_CASTEiJ_T0100124.1 MGP_CASTEiJ_G0037037.1 mouse_genomes_project 9 48619905 48620012 - Gm25633 snRNA snRNA MGP_CASTEiJ_T0101403.1 MGP_CASTEiJ_G0038316.1 mouse_genomes_project 9 95821308 95821418 + Gm25582 snoRNA snoRNA MGP_CASTEiJ_T0092668.1 MGP_CASTEiJ_G0033858.1 mouse_genomes_project 9 56053812 56072444 - MGP_CASTEiJ_P0092668 Snx33 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092669.1 MGP_CASTEiJ_G0033858.1 mouse_genomes_project 9 56061323 56072448 - MGP_CASTEiJ_P0092669 Snx33 protein_coding protein_coding MGP_CASTEiJ_T0015464.1 MGP_CASTEiJ_G0013627.1 mouse_genomes_project 9 75302987 75303531 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002359.1 MGP_CASTEiJ_G0002276.1 mouse_genomes_project 9 101672725 101674069 - TEC TEC MGP_CASTEiJ_T0092468.1 MGP_CASTEiJ_G0033793.1 mouse_genomes_project 9 49585286 49586562 - MGP_CASTEiJ_P0092468 Hspb2 protein_coding protein_coding MGP_CASTEiJ_T0091621.1 MGP_CASTEiJ_G0033468.1 mouse_genomes_project 9 19234967 19236795 + MGP_CASTEiJ_P0091621 Angptl8 protein_coding protein_coding MGP_CASTEiJ_T0015427.1 MGP_CASTEiJ_G0013590.1 mouse_genomes_project 9 33199385 33199703 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095544.1 MGP_CASTEiJ_G0034465.1 mouse_genomes_project 9 125309953 125412284 + MGP_CASTEiJ_P0095544 Lars2 protein_coding protein_coding MGP_CASTEiJ_T0094260.1 MGP_CASTEiJ_G0034214.1 mouse_genomes_project 9 106755220 106763992 - Col6a4 protein_coding processed_transcript MGP_CASTEiJ_T0094261.1 MGP_CASTEiJ_G0034214.1 mouse_genomes_project 9 106756238 106866767 - MGP_CASTEiJ_P0094261 Col6a4 protein_coding protein_coding MGP_CASTEiJ_T0094262.1 MGP_CASTEiJ_G0034214.1 mouse_genomes_project 9 106756240 106864953 - MGP_CASTEiJ_P0094262 Col6a4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0094263.1 MGP_CASTEiJ_G0034214.1 mouse_genomes_project 9 106841581 106842815 - Col6a4 protein_coding processed_transcript MGP_CASTEiJ_T0092393.1 MGP_CASTEiJ_G0033765.1 mouse_genomes_project 9 47173091 47185191 - MGP_CASTEiJ_P0092393 Rexo2 protein_coding protein_coding MGP_CASTEiJ_T0093043.1 MGP_CASTEiJ_G0033960.1 mouse_genomes_project 9 65131164 65134136 - MGP_CASTEiJ_P0093043 Kbtbd13 protein_coding protein_coding MGP_CASTEiJ_T0005271.1 MGP_CASTEiJ_G0004478.1 mouse_genomes_project 9 11744282 11760696 + Gm10706 antisense antisense MGP_CASTEiJ_T0101366.1 MGP_CASTEiJ_G0038279.1 mouse_genomes_project 9 31779178 31779309 + Gm25439 snoRNA snoRNA MGP_CASTEiJ_T0094110.1 MGP_CASTEiJ_G0034189.1 mouse_genomes_project 9 103761201 103778560 - MGP_CASTEiJ_P0094110 Srprb protein_coding protein_coding MGP_CASTEiJ_T0094111.1 MGP_CASTEiJ_G0034189.1 mouse_genomes_project 9 103762255 103778552 - Srprb protein_coding retained_intron MGP_CASTEiJ_T0094113.1 MGP_CASTEiJ_G0034189.1 mouse_genomes_project 9 103763311 103765221 - Srprb protein_coding processed_transcript MGP_CASTEiJ_T0091235.1 MGP_CASTEiJ_G0033326.1 mouse_genomes_project 9 3292932 3294451 - MGP_CASTEiJ_P0091235 Ddi1 protein_coding protein_coding MGP_CASTEiJ_T0015418.1 MGP_CASTEiJ_G0013581.1 mouse_genomes_project 9 18912153 18912512 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092841.1 MGP_CASTEiJ_G0033908.1 mouse_genomes_project 9 59026508 59049439 + MGP_CASTEiJ_P0092841 Pkm protein_coding unknown_likely_coding MGP_CASTEiJ_T0002366.1 MGP_CASTEiJ_G0002283.1 mouse_genomes_project 9 103228028 103230852 - TEC TEC MGP_CASTEiJ_T0095169.1 MGP_CASTEiJ_G0034360.1 mouse_genomes_project 9 112216990 112301644 + MGP_CASTEiJ_P0095169 Lrrfip2 protein_coding protein_coding MGP_CASTEiJ_T0095170.1 MGP_CASTEiJ_G0034360.1 mouse_genomes_project 9 112217509 112328180 + MGP_CASTEiJ_P0095170 Lrrfip2 protein_coding protein_coding MGP_CASTEiJ_T0095171.1 MGP_CASTEiJ_G0034360.1 mouse_genomes_project 9 112217511 112326736 + MGP_CASTEiJ_P0095171 Lrrfip2 protein_coding protein_coding MGP_CASTEiJ_T0095172.1 MGP_CASTEiJ_G0034360.1 mouse_genomes_project 9 112217531 112328182 + MGP_CASTEiJ_P0095172 Lrrfip2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095173.1 MGP_CASTEiJ_G0034360.1 mouse_genomes_project 9 112217533 112328180 + MGP_CASTEiJ_P0095173 Lrrfip2 protein_coding protein_coding MGP_CASTEiJ_T0095174.1 MGP_CASTEiJ_G0034360.1 mouse_genomes_project 9 112217844 112326736 + MGP_CASTEiJ_P0095174 Lrrfip2 protein_coding protein_coding MGP_CASTEiJ_T0095175.1 MGP_CASTEiJ_G0034360.1 mouse_genomes_project 9 112219071 112326736 + MGP_CASTEiJ_P0095175 Lrrfip2 protein_coding protein_coding MGP_CASTEiJ_T0095177.1 MGP_CASTEiJ_G0034360.1 mouse_genomes_project 9 112286390 112316781 + MGP_CASTEiJ_P0095177 Lrrfip2 protein_coding protein_coding MGP_CASTEiJ_T0095178.1 MGP_CASTEiJ_G0034360.1 mouse_genomes_project 9 112294303 112328180 + Lrrfip2 protein_coding processed_transcript MGP_CASTEiJ_T0095179.1 MGP_CASTEiJ_G0034360.1 mouse_genomes_project 9 112301323 112307724 + Lrrfip2 protein_coding retained_intron MGP_CASTEiJ_T0095180.1 MGP_CASTEiJ_G0034360.1 mouse_genomes_project 9 112316774 112319033 + Lrrfip2 protein_coding retained_intron MGP_CASTEiJ_T0095181.1 MGP_CASTEiJ_G0034360.1 mouse_genomes_project 9 112321687 112326467 + Lrrfip2 protein_coding retained_intron MGP_CASTEiJ_T0093999.1 MGP_CASTEiJ_G0034166.1 mouse_genomes_project 9 99982241 99990974 + MGP_CASTEiJ_P0093999 Dbr1 protein_coding protein_coding MGP_CASTEiJ_T0094000.1 MGP_CASTEiJ_G0034166.1 mouse_genomes_project 9 99982270 99988899 + MGP_CASTEiJ_P0094000 Dbr1 protein_coding protein_coding MGP_CASTEiJ_T0094001.1 MGP_CASTEiJ_G0034166.1 mouse_genomes_project 9 99982522 99988507 + MGP_CASTEiJ_P0094001 Dbr1 protein_coding protein_coding MGP_CASTEiJ_T0094002.1 MGP_CASTEiJ_G0034166.1 mouse_genomes_project 9 99982550 99988516 + MGP_CASTEiJ_P0094002 Dbr1 protein_coding protein_coding MGP_CASTEiJ_T0094003.1 MGP_CASTEiJ_G0034166.1 mouse_genomes_project 9 99986655 99990311 + MGP_CASTEiJ_P0094003 Dbr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094004.1 MGP_CASTEiJ_G0034166.1 mouse_genomes_project 9 99986750 99989147 + MGP_CASTEiJ_P0094004 Dbr1 protein_coding protein_coding MGP_CASTEiJ_T0091544.1 MGP_CASTEiJ_G0033441.1 mouse_genomes_project 9 18371000 18377827 + MGP_CASTEiJ_P0091544 Icam5 protein_coding protein_coding MGP_CASTEiJ_T0091406.1 MGP_CASTEiJ_G0033377.1 mouse_genomes_project 9 12671349 12741221 - MGP_CASTEiJ_P0091406 Ccdc67 protein_coding protein_coding MGP_CASTEiJ_T0091407.1 MGP_CASTEiJ_G0033377.1 mouse_genomes_project 9 12671355 12744062 - MGP_CASTEiJ_P0091407 Ccdc67 protein_coding protein_coding MGP_CASTEiJ_T0091408.1 MGP_CASTEiJ_G0033377.1 mouse_genomes_project 9 12672018 12744032 - MGP_CASTEiJ_P0091408 Ccdc67 protein_coding protein_coding MGP_CASTEiJ_T0091409.1 MGP_CASTEiJ_G0033377.1 mouse_genomes_project 9 12687629 12702856 - Ccdc67 protein_coding processed_transcript MGP_CASTEiJ_T0091410.1 MGP_CASTEiJ_G0033377.1 mouse_genomes_project 9 12698931 12744043 - MGP_CASTEiJ_P0091410 Ccdc67 protein_coding protein_coding MGP_CASTEiJ_T0002310.1 MGP_CASTEiJ_G0002228.1 mouse_genomes_project 9 73195420 73197510 + TEC TEC MGP_CASTEiJ_T0094866.1 MGP_CASTEiJ_G0034308.1 mouse_genomes_project 9 109792903 109820908 + MGP_CASTEiJ_P0094866 Celsr3 protein_coding protein_coding MGP_CASTEiJ_T0094867.1 MGP_CASTEiJ_G0034308.1 mouse_genomes_project 9 109793701 109820914 + MGP_CASTEiJ_P0094867 Celsr3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0094868.1 MGP_CASTEiJ_G0034308.1 mouse_genomes_project 9 109798323 109799404 + MGP_CASTEiJ_P0094868 Celsr3 protein_coding protein_coding MGP_CASTEiJ_T0094869.1 MGP_CASTEiJ_G0034308.1 mouse_genomes_project 9 109801055 109803153 + Celsr3 protein_coding retained_intron MGP_CASTEiJ_T0094870.1 MGP_CASTEiJ_G0034308.1 mouse_genomes_project 9 109809237 109809854 + Celsr3 protein_coding retained_intron MGP_CASTEiJ_T0094871.1 MGP_CASTEiJ_G0034308.1 mouse_genomes_project 9 109809863 109810549 + Celsr3 protein_coding retained_intron MGP_CASTEiJ_T0094872.1 MGP_CASTEiJ_G0034308.1 mouse_genomes_project 9 109809881 109815365 + MGP_CASTEiJ_P0094872 Celsr3 protein_coding protein_coding MGP_CASTEiJ_T0093055.1 MGP_CASTEiJ_G0033967.1 mouse_genomes_project 9 65332285 65341010 + MGP_CASTEiJ_P0093055 Pif1 protein_coding protein_coding MGP_CASTEiJ_T0093056.1 MGP_CASTEiJ_G0033967.1 mouse_genomes_project 9 65332307 65332976 + MGP_CASTEiJ_P0093056 Pif1 protein_coding protein_coding MGP_CASTEiJ_T0093057.1 MGP_CASTEiJ_G0033967.1 mouse_genomes_project 9 65332318 65341008 + MGP_CASTEiJ_P0093057 Pif1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093058.1 MGP_CASTEiJ_G0033967.1 mouse_genomes_project 9 65332330 65335634 + Pif1 protein_coding retained_intron MGP_CASTEiJ_T0093059.1 MGP_CASTEiJ_G0033967.1 mouse_genomes_project 9 65332330 65341013 + MGP_CASTEiJ_P0093059 Pif1 protein_coding protein_coding MGP_CASTEiJ_T0093060.1 MGP_CASTEiJ_G0033967.1 mouse_genomes_project 9 65332338 65341013 + Pif1 protein_coding retained_intron MGP_CASTEiJ_T0093061.1 MGP_CASTEiJ_G0033967.1 mouse_genomes_project 9 65332346 65341013 + MGP_CASTEiJ_P0093061 Pif1 protein_coding protein_coding MGP_CASTEiJ_T0093062.1 MGP_CASTEiJ_G0033967.1 mouse_genomes_project 9 65332351 65333419 + MGP_CASTEiJ_P0093062 Pif1 protein_coding protein_coding MGP_CASTEiJ_T0094663.1 MGP_CASTEiJ_G0034278.1 mouse_genomes_project 9 108959059 108961602 + MGP_CASTEiJ_P0094663 Amigo3 protein_coding protein_coding MGP_CASTEiJ_T0092354.1 MGP_CASTEiJ_G0033754.1 mouse_genomes_project 9 44799049 44803282 - MGP_CASTEiJ_P0092354 Apoc3 protein_coding protein_coding MGP_CASTEiJ_T0092355.1 MGP_CASTEiJ_G0033754.1 mouse_genomes_project 9 44799167 44803321 - MGP_CASTEiJ_P0092355 Apoc3 protein_coding protein_coding MGP_CASTEiJ_T0092356.1 MGP_CASTEiJ_G0033754.1 mouse_genomes_project 9 44799314 44803658 - MGP_CASTEiJ_P0092356 Apoc3 protein_coding protein_coding MGP_CASTEiJ_T0092357.1 MGP_CASTEiJ_G0033754.1 mouse_genomes_project 9 44802445 44803491 - MGP_CASTEiJ_P0092357 Apoc3 protein_coding protein_coding MGP_CASTEiJ_T0093173.1 MGP_CASTEiJ_G0033990.1 mouse_genomes_project 9 67094688 67285264 - MGP_CASTEiJ_P0093173 Tln2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093174.1 MGP_CASTEiJ_G0033990.1 mouse_genomes_project 9 67094696 67455408 - MGP_CASTEiJ_P0093174 Tln2 protein_coding protein_coding MGP_CASTEiJ_T0093175.1 MGP_CASTEiJ_G0033990.1 mouse_genomes_project 9 67098723 67435319 - MGP_CASTEiJ_P0093175 Tln2 protein_coding protein_coding MGP_CASTEiJ_T0010753.1 MGP_CASTEiJ_G0008941.1 mouse_genomes_project 9 49944286 49944370 - Mir34b miRNA miRNA MGP_CASTEiJ_T0100158.1 MGP_CASTEiJ_G0037071.1 mouse_genomes_project 9 96150199 96150378 + Gm24004 snRNA snRNA MGP_CASTEiJ_T0091441.1 MGP_CASTEiJ_G0033390.1 mouse_genomes_project 9 16016152 16017091 - MGP_CASTEiJ_P0091441 Olfr828 protein_coding protein_coding MGP_CASTEiJ_T0092721.1 MGP_CASTEiJ_G0033874.1 mouse_genomes_project 9 56782196 56811838 + MGP_CASTEiJ_P0092721 Scamp2 protein_coding protein_coding MGP_CASTEiJ_T0091867.1 MGP_CASTEiJ_G0033547.1 mouse_genomes_project 9 33658131 33659337 + MGP_CASTEiJ_P0091867 Gm17677 protein_coding protein_coding MGP_CASTEiJ_T0092095.1 MGP_CASTEiJ_G0033675.1 mouse_genomes_project 9 38998852 39005106 + MGP_CASTEiJ_P0092095 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092096.1 MGP_CASTEiJ_G0033675.1 mouse_genomes_project 9 38999013 39004171 + protein_coding retained_intron MGP_CASTEiJ_T0092097.1 MGP_CASTEiJ_G0033675.1 mouse_genomes_project 9 38999026 39000245 + protein_coding retained_intron MGP_CASTEiJ_T0092098.1 MGP_CASTEiJ_G0033675.1 mouse_genomes_project 9 38999198 39000916 + MGP_CASTEiJ_P0092098 protein_coding protein_coding MGP_CASTEiJ_T0092099.1 MGP_CASTEiJ_G0033675.1 mouse_genomes_project 9 39000090 39000702 + protein_coding retained_intron MGP_CASTEiJ_T0101408.1 MGP_CASTEiJ_G0038321.1 mouse_genomes_project 9 101887481 101887613 - Gm24638 snoRNA snoRNA MGP_CASTEiJ_T0095103.1 MGP_CASTEiJ_G0034343.1 mouse_genomes_project 9 111718735 111775740 + MGP_CASTEiJ_P0095103 Ccdc12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095104.1 MGP_CASTEiJ_G0034343.1 mouse_genomes_project 9 111719342 111720491 + Ccdc12 protein_coding retained_intron MGP_CASTEiJ_T0095105.1 MGP_CASTEiJ_G0034343.1 mouse_genomes_project 9 111719347 111765541 + Ccdc12 protein_coding retained_intron MGP_CASTEiJ_T0095106.1 MGP_CASTEiJ_G0034343.1 mouse_genomes_project 9 111719355 111775395 + MGP_CASTEiJ_P0095106 Ccdc12 protein_coding protein_coding MGP_CASTEiJ_T0095107.1 MGP_CASTEiJ_G0034343.1 mouse_genomes_project 9 111719359 111772882 + Ccdc12 protein_coding retained_intron MGP_CASTEiJ_T0095108.1 MGP_CASTEiJ_G0034343.1 mouse_genomes_project 9 111719429 111775653 + Ccdc12 protein_coding processed_transcript MGP_CASTEiJ_T0095109.1 MGP_CASTEiJ_G0034343.1 mouse_genomes_project 9 111731201 111775425 + Ccdc12 protein_coding processed_transcript MGP_CASTEiJ_T0095110.1 MGP_CASTEiJ_G0034343.1 mouse_genomes_project 9 111774033 111775727 + MGP_CASTEiJ_P0095110 Ccdc12 protein_coding protein_coding MGP_CASTEiJ_T0095111.1 MGP_CASTEiJ_G0034343.1 mouse_genomes_project 9 111774150 111775733 + Ccdc12 protein_coding retained_intron MGP_CASTEiJ_T0095112.1 MGP_CASTEiJ_G0034343.1 mouse_genomes_project 9 111774180 111775604 + Ccdc12 protein_coding retained_intron MGP_CASTEiJ_T0100119.1 MGP_CASTEiJ_G0037032.1 mouse_genomes_project 9 42936880 42936995 - Gm22540 snRNA snRNA MGP_CASTEiJ_T0009067.1 MGP_CASTEiJ_G0007302.1 mouse_genomes_project 9 93029098 93053330 + Gm28054 lincRNA lincRNA MGP_CASTEiJ_T0100133.1 MGP_CASTEiJ_G0037046.1 mouse_genomes_project 9 65684355 65684463 + Gm23248 snRNA snRNA MGP_CASTEiJ_T0093362.1 MGP_CASTEiJ_G0034027.1 mouse_genomes_project 9 73154046 73187460 + MGP_CASTEiJ_P0093362 Ccpg1 protein_coding protein_coding MGP_CASTEiJ_T0093363.1 MGP_CASTEiJ_G0034027.1 mouse_genomes_project 9 73154083 73184480 + MGP_CASTEiJ_P0093363 Ccpg1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093364.1 MGP_CASTEiJ_G0034027.1 mouse_genomes_project 9 73154121 73171553 + MGP_CASTEiJ_P0093364 Ccpg1 protein_coding protein_coding MGP_CASTEiJ_T0093365.1 MGP_CASTEiJ_G0034027.1 mouse_genomes_project 9 73154195 73185054 + MGP_CASTEiJ_P0093365 Ccpg1 protein_coding protein_coding MGP_CASTEiJ_T0093366.1 MGP_CASTEiJ_G0034027.1 mouse_genomes_project 9 73154203 73156684 + Ccpg1 protein_coding retained_intron MGP_CASTEiJ_T0093367.1 MGP_CASTEiJ_G0034027.1 mouse_genomes_project 9 73154222 73187120 + MGP_CASTEiJ_P0093367 Ccpg1 protein_coding protein_coding MGP_CASTEiJ_T0093368.1 MGP_CASTEiJ_G0034027.1 mouse_genomes_project 9 73154222 73187458 + MGP_CASTEiJ_P0093368 Ccpg1 protein_coding protein_coding MGP_CASTEiJ_T0093369.1 MGP_CASTEiJ_G0034027.1 mouse_genomes_project 9 73154225 73171825 + Ccpg1 protein_coding retained_intron MGP_CASTEiJ_T0093370.1 MGP_CASTEiJ_G0034027.1 mouse_genomes_project 9 73154236 73185047 + MGP_CASTEiJ_P0093370 Ccpg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093373.1 MGP_CASTEiJ_G0034027.1 mouse_genomes_project 9 73181002 73183091 + Ccpg1 protein_coding retained_intron MGP_CASTEiJ_T0093376.1 MGP_CASTEiJ_G0034027.1 mouse_genomes_project 9 73186088 73187460 + Ccpg1 protein_coding retained_intron MGP_CASTEiJ_T0017812.1 MGP_CASTEiJ_G0015068.1 mouse_genomes_project 9 97047353 97058292 + C430002N11Rik processed_transcript retained_intron MGP_CASTEiJ_T0017813.1 MGP_CASTEiJ_G0015068.1 mouse_genomes_project 9 97047366 97072281 + C430002N11Rik processed_transcript lincRNA MGP_CASTEiJ_T0017814.1 MGP_CASTEiJ_G0015068.1 mouse_genomes_project 9 97047366 97059083 + C430002N11Rik processed_transcript retained_intron MGP_CASTEiJ_T0017815.1 MGP_CASTEiJ_G0015068.1 mouse_genomes_project 9 97047376 97058304 + C430002N11Rik processed_transcript retained_intron MGP_CASTEiJ_T0017816.1 MGP_CASTEiJ_G0015068.1 mouse_genomes_project 9 97047392 97057983 + C430002N11Rik processed_transcript lincRNA MGP_CASTEiJ_T0005371.1 MGP_CASTEiJ_G0004543.1 mouse_genomes_project 9 104071358 104094312 + Gm16252 antisense antisense MGP_CASTEiJ_T0002388.1 MGP_CASTEiJ_G0002305.1 mouse_genomes_project 9 109876204 109876743 - TEC TEC MGP_CASTEiJ_T0092023.1 MGP_CASTEiJ_G0033632.1 mouse_genomes_project 9 37182736 37272941 + MGP_CASTEiJ_P0092023 protein_coding protein_coding MGP_CASTEiJ_T0017749.1 MGP_CASTEiJ_G0015046.1 mouse_genomes_project 9 18574112 18575148 + Gm16754 processed_transcript retained_intron MGP_CASTEiJ_T0017750.1 MGP_CASTEiJ_G0015046.1 mouse_genomes_project 9 18574112 18583446 + Gm16754 processed_transcript antisense MGP_CASTEiJ_T0017751.1 MGP_CASTEiJ_G0015046.1 mouse_genomes_project 9 18574144 18583874 + Gm16754 processed_transcript antisense MGP_CASTEiJ_T0101398.1 MGP_CASTEiJ_G0038311.1 mouse_genomes_project 9 86481291 86481421 - Gm22830 snoRNA snoRNA MGP_CASTEiJ_T0011418.1 MGP_CASTEiJ_G0009606.1 mouse_genomes_project 9 114616158 114616455 + Gm22492 misc_RNA misc_RNA MGP_CASTEiJ_T0005296.1 MGP_CASTEiJ_G0004496.1 mouse_genomes_project 9 44812406 44813327 - Gm10680 antisense antisense MGP_CASTEiJ_T0011419.1 MGP_CASTEiJ_G0009607.1 mouse_genomes_project 9 119913248 119913555 + Gm22198 misc_RNA misc_RNA MGP_CASTEiJ_T0091470.1 MGP_CASTEiJ_G0033419.1 mouse_genomes_project 9 17608561 17609619 + MGP_CASTEiJ_P0091470 protein_coding protein_coding MGP_CASTEiJ_T0091564.1 MGP_CASTEiJ_G0033450.1 mouse_genomes_project 9 18615541 18625618 + MGP_CASTEiJ_P0091564 Atg4d protein_coding protein_coding MGP_CASTEiJ_T0010745.1 MGP_CASTEiJ_G0008933.1 mouse_genomes_project 9 39852156 39852233 + Mir125b-1 miRNA miRNA MGP_CASTEiJ_T0092055.1 MGP_CASTEiJ_G0033658.1 mouse_genomes_project 9 38115881 38118693 - MGP_CASTEiJ_P0092055 Olfr976 protein_coding protein_coding MGP_CASTEiJ_T0009014.1 MGP_CASTEiJ_G0007260.1 mouse_genomes_project 9 56748405 56756045 - Gm26631 lincRNA lincRNA MGP_CASTEiJ_T0092945.1 MGP_CASTEiJ_G0033929.1 mouse_genomes_project 9 62420216 62434447 + MGP_CASTEiJ_P0092945 Calml4 protein_coding protein_coding MGP_CASTEiJ_T0101353.1 MGP_CASTEiJ_G0038266.1 mouse_genomes_project 9 12410979 12411050 + Gm24299 snoRNA snoRNA MGP_CASTEiJ_T0095265.1 MGP_CASTEiJ_G0034377.1 mouse_genomes_project 9 115859743 115866101 - MGP_CASTEiJ_P0095265 Ccr4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002344.1 MGP_CASTEiJ_G0002261.1 mouse_genomes_project 9 96456897 96459857 + TEC TEC MGP_CASTEiJ_T0094352.1 MGP_CASTEiJ_G0034230.1 mouse_genomes_project 9 107314213 107316495 + MGP_CASTEiJ_P0094352 Iqcf1 protein_coding protein_coding MGP_CASTEiJ_T0094353.1 MGP_CASTEiJ_G0034230.1 mouse_genomes_project 9 107314238 107316500 + MGP_CASTEiJ_P0094353 Iqcf1 protein_coding protein_coding MGP_CASTEiJ_T0092541.1 MGP_CASTEiJ_G0033816.1 mouse_genomes_project 9 52389140 52489098 - MGP_CASTEiJ_P0092541 Atm protein_coding protein_coding MGP_CASTEiJ_T0092542.1 MGP_CASTEiJ_G0033816.1 mouse_genomes_project 9 52389772 52489078 - MGP_CASTEiJ_P0092542 Atm protein_coding unknown_likely_coding MGP_CASTEiJ_T0092543.1 MGP_CASTEiJ_G0033816.1 mouse_genomes_project 9 52390131 52392608 - Atm protein_coding retained_intron MGP_CASTEiJ_T0092544.1 MGP_CASTEiJ_G0033816.1 mouse_genomes_project 9 52395422 52404432 - MGP_CASTEiJ_P0092544 Atm protein_coding protein_coding MGP_CASTEiJ_T0092545.1 MGP_CASTEiJ_G0033816.1 mouse_genomes_project 9 52473267 52489031 - Atm protein_coding retained_intron MGP_CASTEiJ_T0092546.1 MGP_CASTEiJ_G0033816.1 mouse_genomes_project 9 52478594 52488966 - MGP_CASTEiJ_P0092546 Atm protein_coding protein_coding MGP_CASTEiJ_T0095552.1 MGP_CASTEiJ_G0034469.1 mouse_genomes_project 9 125553349 125627956 - MGP_CASTEiJ_P0095552 Slc6a20a protein_coding protein_coding MGP_CASTEiJ_T0095553.1 MGP_CASTEiJ_G0034469.1 mouse_genomes_project 9 125605112 125627932 - MGP_CASTEiJ_P0095553 Slc6a20a protein_coding protein_coding MGP_CASTEiJ_T0094492.1 MGP_CASTEiJ_G0034258.1 mouse_genomes_project 9 108460398 108468231 - MGP_CASTEiJ_P0094492 Sema3b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094493.1 MGP_CASTEiJ_G0034258.1 mouse_genomes_project 9 108460944 108471949 - MGP_CASTEiJ_P0094493 Sema3b protein_coding protein_coding MGP_CASTEiJ_T0094494.1 MGP_CASTEiJ_G0034258.1 mouse_genomes_project 9 108461080 108471919 - MGP_CASTEiJ_P0094494 Sema3b protein_coding protein_coding MGP_CASTEiJ_T0094495.1 MGP_CASTEiJ_G0034258.1 mouse_genomes_project 9 108461081 108469368 - MGP_CASTEiJ_P0094495 Sema3b protein_coding protein_coding MGP_CASTEiJ_T0094496.1 MGP_CASTEiJ_G0034258.1 mouse_genomes_project 9 108461082 108471913 - MGP_CASTEiJ_P0094496 Sema3b protein_coding protein_coding MGP_CASTEiJ_T0094497.1 MGP_CASTEiJ_G0034258.1 mouse_genomes_project 9 108461082 108468112 - MGP_CASTEiJ_P0094497 Sema3b protein_coding protein_coding MGP_CASTEiJ_T0094498.1 MGP_CASTEiJ_G0034258.1 mouse_genomes_project 9 108462535 108464039 - Sema3b protein_coding retained_intron MGP_CASTEiJ_T0094499.1 MGP_CASTEiJ_G0034258.1 mouse_genomes_project 9 108464347 108464899 - Sema3b protein_coding retained_intron MGP_CASTEiJ_T0094500.1 MGP_CASTEiJ_G0034258.1 mouse_genomes_project 9 108465865 108467979 - MGP_CASTEiJ_P0094500 Sema3b protein_coding protein_coding MGP_CASTEiJ_T0094501.1 MGP_CASTEiJ_G0034258.1 mouse_genomes_project 9 108466020 108469628 - MGP_CASTEiJ_P0094501 Sema3b protein_coding protein_coding MGP_CASTEiJ_T0094502.1 MGP_CASTEiJ_G0034258.1 mouse_genomes_project 9 108466052 108469395 - MGP_CASTEiJ_P0094502 Sema3b protein_coding protein_coding MGP_CASTEiJ_T0094503.1 MGP_CASTEiJ_G0034258.1 mouse_genomes_project 9 108466867 108469393 - MGP_CASTEiJ_P0094503 Sema3b protein_coding protein_coding MGP_CASTEiJ_T0094504.1 MGP_CASTEiJ_G0034258.1 mouse_genomes_project 9 108467756 108471940 - MGP_CASTEiJ_P0094504 Sema3b protein_coding protein_coding MGP_CASTEiJ_T0094505.1 MGP_CASTEiJ_G0034258.1 mouse_genomes_project 9 108467800 108469897 - Sema3b protein_coding processed_transcript MGP_CASTEiJ_T0005276.1 MGP_CASTEiJ_G0004480.1 mouse_genomes_project 9 18431779 18467685 + 1700084C06Rik antisense antisense MGP_CASTEiJ_T0093929.1 MGP_CASTEiJ_G0034145.1 mouse_genomes_project 9 97385210 97426470 - MGP_CASTEiJ_P0093929 Slc25a36 protein_coding protein_coding MGP_CASTEiJ_T0093930.1 MGP_CASTEiJ_G0034145.1 mouse_genomes_project 9 97385814 97397297 - MGP_CASTEiJ_P0093930 Slc25a36 protein_coding protein_coding MGP_CASTEiJ_T0093931.1 MGP_CASTEiJ_G0034145.1 mouse_genomes_project 9 97389167 97426320 - MGP_CASTEiJ_P0093931 Slc25a36 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093932.1 MGP_CASTEiJ_G0034145.1 mouse_genomes_project 9 97389453 97398086 - Slc25a36 protein_coding retained_intron MGP_CASTEiJ_T0093933.1 MGP_CASTEiJ_G0034145.1 mouse_genomes_project 9 97391635 97402776 - Slc25a36 protein_coding processed_transcript MGP_CASTEiJ_T0093934.1 MGP_CASTEiJ_G0034145.1 mouse_genomes_project 9 97391801 97402893 - Slc25a36 protein_coding processed_transcript MGP_CASTEiJ_T0093935.1 MGP_CASTEiJ_G0034145.1 mouse_genomes_project 9 97402450 97414168 - MGP_CASTEiJ_P0093935 Slc25a36 protein_coding protein_coding MGP_CASTEiJ_T0093936.1 MGP_CASTEiJ_G0034145.1 mouse_genomes_project 9 97405553 97426300 - Slc25a36 protein_coding retained_intron MGP_CASTEiJ_T0093937.1 MGP_CASTEiJ_G0034145.1 mouse_genomes_project 9 97413250 97426346 - Slc25a36 protein_coding retained_intron MGP_CASTEiJ_T0005382.1 MGP_CASTEiJ_G0004552.1 mouse_genomes_project 9 107465788 107469339 + Gm28111 antisense antisense MGP_CASTEiJ_T0091480.1 MGP_CASTEiJ_G0033423.1 mouse_genomes_project 9 17762791 17788342 - MGP_CASTEiJ_P0091480 Zfp426 protein_coding protein_coding MGP_CASTEiJ_T0091481.1 MGP_CASTEiJ_G0033423.1 mouse_genomes_project 9 17762791 17788342 - MGP_CASTEiJ_P0091481 Zfp426 protein_coding protein_coding MGP_CASTEiJ_T0091482.1 MGP_CASTEiJ_G0033423.1 mouse_genomes_project 9 17762791 17772514 - MGP_CASTEiJ_P0091482 Zfp426 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091483.1 MGP_CASTEiJ_G0033423.1 mouse_genomes_project 9 17762945 17788338 - MGP_CASTEiJ_P0091483 Zfp426 protein_coding protein_coding MGP_CASTEiJ_T0091484.1 MGP_CASTEiJ_G0033423.1 mouse_genomes_project 9 17763783 17788338 - MGP_CASTEiJ_P0091484 Zfp426 protein_coding protein_coding MGP_CASTEiJ_T0091485.1 MGP_CASTEiJ_G0033423.1 mouse_genomes_project 9 17764062 17788338 - MGP_CASTEiJ_P0091485 Zfp426 protein_coding protein_coding MGP_CASTEiJ_T0091486.1 MGP_CASTEiJ_G0033423.1 mouse_genomes_project 9 17764231 17772401 - MGP_CASTEiJ_P0091486 Zfp426 protein_coding protein_coding MGP_CASTEiJ_T0091487.1 MGP_CASTEiJ_G0033423.1 mouse_genomes_project 9 17765221 17767695 - Zfp426 protein_coding retained_intron MGP_CASTEiJ_T0091488.1 MGP_CASTEiJ_G0033423.1 mouse_genomes_project 9 17765367 17788327 - MGP_CASTEiJ_P0091488 Zfp426 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091489.1 MGP_CASTEiJ_G0033423.1 mouse_genomes_project 9 17765412 17785055 - MGP_CASTEiJ_P0091489 Zfp426 protein_coding protein_coding MGP_CASTEiJ_T0091490.1 MGP_CASTEiJ_G0033423.1 mouse_genomes_project 9 17767337 17772498 - MGP_CASTEiJ_P0091490 Zfp426 protein_coding protein_coding MGP_CASTEiJ_T0091491.1 MGP_CASTEiJ_G0033423.1 mouse_genomes_project 9 17769185 17788297 - MGP_CASTEiJ_P0091491 Zfp426 protein_coding protein_coding MGP_CASTEiJ_T0091492.1 MGP_CASTEiJ_G0033423.1 mouse_genomes_project 9 17770671 17788307 - MGP_CASTEiJ_P0091492 Zfp426 protein_coding protein_coding MGP_CASTEiJ_T0093078.1 MGP_CASTEiJ_G0033972.1 mouse_genomes_project 9 65673647 65688169 + MGP_CASTEiJ_P0093078 2810417H13Rik protein_coding protein_coding MGP_CASTEiJ_T0093079.1 MGP_CASTEiJ_G0033972.1 mouse_genomes_project 9 65673730 65677183 + 2810417H13Rik protein_coding retained_intron MGP_CASTEiJ_T0093080.1 MGP_CASTEiJ_G0033972.1 mouse_genomes_project 9 65673772 65676507 + 2810417H13Rik protein_coding retained_intron MGP_CASTEiJ_T0092288.1 MGP_CASTEiJ_G0033736.1 mouse_genomes_project 9 43634075 43646258 + MGP_CASTEiJ_P0092288 Scn2b protein_coding protein_coding MGP_CASTEiJ_T0092289.1 MGP_CASTEiJ_G0033736.1 mouse_genomes_project 9 43634080 43646256 + MGP_CASTEiJ_P0092289 Scn2b protein_coding protein_coding MGP_CASTEiJ_T0005380.1 MGP_CASTEiJ_G0004550.1 mouse_genomes_project 9 107106270 107135969 - Gm29123 antisense antisense MGP_CASTEiJ_T0095587.1 MGP_CASTEiJ_G0034481.1 mouse_genomes_project 9 126268565 126273763 + MGP_CASTEiJ_P0095587 Nlrp4g protein_coding protein_coding MGP_CASTEiJ_T0093579.1 MGP_CASTEiJ_G0034082.1 mouse_genomes_project 9 83384499 83405693 + MGP_CASTEiJ_P0093579 Irak1bp1 protein_coding protein_coding MGP_CASTEiJ_T0093580.1 MGP_CASTEiJ_G0034082.1 mouse_genomes_project 9 83384765 83405027 + MGP_CASTEiJ_P0093580 Irak1bp1 protein_coding protein_coding MGP_CASTEiJ_T0095397.1 MGP_CASTEiJ_G0034420.1 mouse_genomes_project 9 121910163 121927754 + MGP_CASTEiJ_P0095397 Slc25a38 protein_coding protein_coding MGP_CASTEiJ_T0095398.1 MGP_CASTEiJ_G0034420.1 mouse_genomes_project 9 121910194 121923011 + MGP_CASTEiJ_P0095398 Slc25a38 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095399.1 MGP_CASTEiJ_G0034420.1 mouse_genomes_project 9 121910197 121922638 + Slc25a38 protein_coding processed_transcript MGP_CASTEiJ_T0095400.1 MGP_CASTEiJ_G0034420.1 mouse_genomes_project 9 121910197 121913879 + Slc25a38 protein_coding processed_transcript MGP_CASTEiJ_T0095401.1 MGP_CASTEiJ_G0034420.1 mouse_genomes_project 9 121910213 121926899 + MGP_CASTEiJ_P0095401 Slc25a38 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095402.1 MGP_CASTEiJ_G0034420.1 mouse_genomes_project 9 121917162 121924560 + MGP_CASTEiJ_P0095402 Slc25a38 protein_coding protein_coding MGP_CASTEiJ_T0095403.1 MGP_CASTEiJ_G0034420.1 mouse_genomes_project 9 121917301 121922613 + Slc25a38 protein_coding processed_transcript MGP_CASTEiJ_T0015415.1 MGP_CASTEiJ_G0013578.1 mouse_genomes_project 9 11902720 11903527 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005344.1 MGP_CASTEiJ_G0004525.1 mouse_genomes_project 9 82312412 82412921 - Gm26907 antisense antisense MGP_CASTEiJ_T0091810.1 MGP_CASTEiJ_G0033532.1 mouse_genomes_project 9 32958935 33016067 - MGP_CASTEiJ_P0091810 St3gal4 protein_coding protein_coding MGP_CASTEiJ_T0092045.1 MGP_CASTEiJ_G0033648.1 mouse_genomes_project 9 37913975 37914915 + MGP_CASTEiJ_P0092045 Olfr150 protein_coding protein_coding MGP_CASTEiJ_T0094535.1 MGP_CASTEiJ_G0034262.1 mouse_genomes_project 9 108547237 108580411 - MGP_CASTEiJ_P0094535 Sema3f protein_coding protein_coding MGP_CASTEiJ_T0094536.1 MGP_CASTEiJ_G0034262.1 mouse_genomes_project 9 108548157 108575489 - MGP_CASTEiJ_P0094536 Sema3f protein_coding protein_coding MGP_CASTEiJ_T0094537.1 MGP_CASTEiJ_G0034262.1 mouse_genomes_project 9 108548861 108550497 - Sema3f protein_coding retained_intron MGP_CASTEiJ_T0094538.1 MGP_CASTEiJ_G0034262.1 mouse_genomes_project 9 108548861 108579955 - MGP_CASTEiJ_P0094538 Sema3f protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094539.1 MGP_CASTEiJ_G0034262.1 mouse_genomes_project 9 108549729 108555203 - MGP_CASTEiJ_P0094539 Sema3f protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094540.1 MGP_CASTEiJ_G0034262.1 mouse_genomes_project 9 108549745 108550533 - Sema3f protein_coding retained_intron MGP_CASTEiJ_T0094541.1 MGP_CASTEiJ_G0034262.1 mouse_genomes_project 9 108549868 108550507 - Sema3f protein_coding retained_intron MGP_CASTEiJ_T0094542.1 MGP_CASTEiJ_G0034262.1 mouse_genomes_project 9 108555160 108561332 - Sema3f protein_coding processed_transcript MGP_CASTEiJ_T0094543.1 MGP_CASTEiJ_G0034262.1 mouse_genomes_project 9 108555627 108561260 - MGP_CASTEiJ_P0094543 Sema3f protein_coding protein_coding MGP_CASTEiJ_T0094544.1 MGP_CASTEiJ_G0034262.1 mouse_genomes_project 9 108555641 108558553 - Sema3f protein_coding retained_intron MGP_CASTEiJ_T0094545.1 MGP_CASTEiJ_G0034262.1 mouse_genomes_project 9 108556213 108579417 - MGP_CASTEiJ_P0094545 Sema3f protein_coding protein_coding MGP_CASTEiJ_T0094546.1 MGP_CASTEiJ_G0034262.1 mouse_genomes_project 9 108558321 108561321 - MGP_CASTEiJ_P0094546 Sema3f protein_coding protein_coding MGP_CASTEiJ_T0095206.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113216381 113342283 - MGP_CASTEiJ_P0095206 Arpp21 protein_coding protein_coding MGP_CASTEiJ_T0095207.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113216381 113340457 - MGP_CASTEiJ_P0095207 Arpp21 protein_coding protein_coding MGP_CASTEiJ_T0095208.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113216381 113342283 - MGP_CASTEiJ_P0095208 Arpp21 protein_coding protein_coding MGP_CASTEiJ_T0095209.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113216381 113340244 - MGP_CASTEiJ_P0095209 Arpp21 protein_coding protein_coding MGP_CASTEiJ_T0095210.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113216525 113340287 - MGP_CASTEiJ_P0095210 Arpp21 protein_coding protein_coding MGP_CASTEiJ_T0095211.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113216527 113390032 - Arpp21 protein_coding retained_intron MGP_CASTEiJ_T0095212.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113216549 113390623 - MGP_CASTEiJ_P0095212 Arpp21 protein_coding protein_coding MGP_CASTEiJ_T0095213.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113216551 113388091 - MGP_CASTEiJ_P0095213 Arpp21 protein_coding protein_coding MGP_CASTEiJ_T0095214.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113217026 113342164 - MGP_CASTEiJ_P0095214 Arpp21 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095215.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113269931 113373172 - MGP_CASTEiJ_P0095215 Arpp21 protein_coding protein_coding MGP_CASTEiJ_T0095216.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113309099 113390450 - Arpp21 protein_coding retained_intron MGP_CASTEiJ_T0095217.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113310107 113390623 - MGP_CASTEiJ_P0095217 Arpp21 protein_coding protein_coding MGP_CASTEiJ_T0095218.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113315491 113373262 - MGP_CASTEiJ_P0095218 Arpp21 protein_coding protein_coding MGP_CASTEiJ_T0095219.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113330158 113389236 - Arpp21 protein_coding retained_intron MGP_CASTEiJ_T0095220.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113333641 113373237 - MGP_CASTEiJ_P0095220 Arpp21 protein_coding protein_coding MGP_CASTEiJ_T0095221.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113333687 113373237 - MGP_CASTEiJ_P0095221 Arpp21 protein_coding protein_coding MGP_CASTEiJ_T0095222.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113333725 113389425 - MGP_CASTEiJ_P0095222 Arpp21 protein_coding protein_coding MGP_CASTEiJ_T0095223.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113334598 113342443 - MGP_CASTEiJ_P0095223 Arpp21 protein_coding protein_coding MGP_CASTEiJ_T0095224.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113334598 113342446 - MGP_CASTEiJ_P0095224 Arpp21 protein_coding protein_coding MGP_CASTEiJ_T0095225.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113335538 113342421 - Arpp21 protein_coding retained_intron MGP_CASTEiJ_T0095226.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113335544 113342466 - Arpp21 protein_coding processed_transcript MGP_CASTEiJ_T0095227.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113335573 113342443 - Arpp21 protein_coding processed_transcript MGP_CASTEiJ_T0095228.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113337220 113342397 - Arpp21 protein_coding retained_intron MGP_CASTEiJ_T0095229.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113337250 113340601 - Arpp21 protein_coding processed_transcript MGP_CASTEiJ_T0095230.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113337293 113340457 - Arpp21 protein_coding processed_transcript MGP_CASTEiJ_T0095231.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113337550 113340444 - Arpp21 protein_coding retained_intron MGP_CASTEiJ_T0095232.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113340252 113387492 - Arpp21 protein_coding processed_transcript MGP_CASTEiJ_T0095233.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113342108 113389482 - Arpp21 protein_coding processed_transcript MGP_CASTEiJ_T0095234.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113342145 113391549 - Arpp21 protein_coding processed_transcript MGP_CASTEiJ_T0095235.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113342178 113342953 - Arpp21 protein_coding processed_transcript MGP_CASTEiJ_T0095236.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113342446 113342987 - Arpp21 protein_coding processed_transcript MGP_CASTEiJ_T0095237.1 MGP_CASTEiJ_G0034366.1 mouse_genomes_project 9 113360670 113373215 - Arpp21 protein_coding retained_intron MGP_CASTEiJ_T0010748.1 MGP_CASTEiJ_G0008936.1 mouse_genomes_project 9 42856835 42856901 + Mir7085 miRNA miRNA MGP_CASTEiJ_T0002309.1 MGP_CASTEiJ_G0002227.1 mouse_genomes_project 9 73141664 73142938 - TEC TEC MGP_CASTEiJ_T0094807.1 MGP_CASTEiJ_G0034299.1 mouse_genomes_project 9 109510244 109511588 - MGP_CASTEiJ_P0094807 Ndufaf3 protein_coding protein_coding MGP_CASTEiJ_T0094808.1 MGP_CASTEiJ_G0034299.1 mouse_genomes_project 9 109510535 109511571 - Ndufaf3 protein_coding retained_intron MGP_CASTEiJ_T0094809.1 MGP_CASTEiJ_G0034299.1 mouse_genomes_project 9 109510837 109511591 - Ndufaf3 protein_coding retained_intron MGP_CASTEiJ_T0092568.1 MGP_CASTEiJ_G0033825.1 mouse_genomes_project 9 53003380 53045242 - MGP_CASTEiJ_P0092568 Tnfaip8l3 protein_coding protein_coding MGP_CASTEiJ_T0017764.1 MGP_CASTEiJ_G0015051.1 mouse_genomes_project 9 39631732 39860182 + processed_transcript lincRNA MGP_CASTEiJ_T0017765.1 MGP_CASTEiJ_G0015051.1 mouse_genomes_project 9 39631861 39750932 + processed_transcript lincRNA MGP_CASTEiJ_T0017766.1 MGP_CASTEiJ_G0015051.1 mouse_genomes_project 9 39631896 39690262 + processed_transcript lincRNA MGP_CASTEiJ_T0017767.1 MGP_CASTEiJ_G0015051.1 mouse_genomes_project 9 39735922 39860639 + processed_transcript lincRNA MGP_CASTEiJ_T0017768.1 MGP_CASTEiJ_G0015051.1 mouse_genomes_project 9 39736030 39888240 + processed_transcript lincRNA MGP_CASTEiJ_T0017769.1 MGP_CASTEiJ_G0015051.1 mouse_genomes_project 9 39847872 39862989 + processed_transcript lincRNA MGP_CASTEiJ_T0017770.1 MGP_CASTEiJ_G0015051.1 mouse_genomes_project 9 39848359 39862992 + processed_transcript lincRNA MGP_CASTEiJ_T0017771.1 MGP_CASTEiJ_G0015051.1 mouse_genomes_project 9 39850958 39862990 + processed_transcript processed_transcript MGP_CASTEiJ_T0017772.1 MGP_CASTEiJ_G0015051.1 mouse_genomes_project 9 39851483 39885842 + processed_transcript lincRNA MGP_CASTEiJ_T0017773.1 MGP_CASTEiJ_G0015051.1 mouse_genomes_project 9 39851497 39888065 + processed_transcript lincRNA MGP_CASTEiJ_T0017774.1 MGP_CASTEiJ_G0015051.1 mouse_genomes_project 9 39851569 39862650 + processed_transcript lincRNA MGP_CASTEiJ_T0017775.1 MGP_CASTEiJ_G0015051.1 mouse_genomes_project 9 39858655 39862900 + processed_transcript retained_intron MGP_CASTEiJ_T0017776.1 MGP_CASTEiJ_G0015051.1 mouse_genomes_project 9 39872277 39885808 + processed_transcript lincRNA MGP_CASTEiJ_T0017777.1 MGP_CASTEiJ_G0015051.1 mouse_genomes_project 9 39887315 39890826 + processed_transcript retained_intron MGP_CASTEiJ_T0091581.1 MGP_CASTEiJ_G0033457.1 mouse_genomes_project 9 18788833 18883654 + MGP_CASTEiJ_P0091581 Dnm2 protein_coding protein_coding MGP_CASTEiJ_T0091582.1 MGP_CASTEiJ_G0033457.1 mouse_genomes_project 9 18788857 18883038 + MGP_CASTEiJ_P0091582 Dnm2 protein_coding protein_coding MGP_CASTEiJ_T0091583.1 MGP_CASTEiJ_G0033457.1 mouse_genomes_project 9 18788870 18883040 + MGP_CASTEiJ_P0091583 Dnm2 protein_coding protein_coding MGP_CASTEiJ_T0091584.1 MGP_CASTEiJ_G0033457.1 mouse_genomes_project 9 18788893 18835986 + MGP_CASTEiJ_P0091584 Dnm2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091585.1 MGP_CASTEiJ_G0033457.1 mouse_genomes_project 9 18788896 18883026 + MGP_CASTEiJ_P0091585 Dnm2 protein_coding protein_coding MGP_CASTEiJ_T0091586.1 MGP_CASTEiJ_G0033457.1 mouse_genomes_project 9 18788901 18883024 + MGP_CASTEiJ_P0091586 Dnm2 protein_coding protein_coding MGP_CASTEiJ_T0091587.1 MGP_CASTEiJ_G0033457.1 mouse_genomes_project 9 18789021 18867188 + MGP_CASTEiJ_P0091587 Dnm2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091588.1 MGP_CASTEiJ_G0033457.1 mouse_genomes_project 9 18789021 18882303 + MGP_CASTEiJ_P0091588 Dnm2 protein_coding protein_coding MGP_CASTEiJ_T0091589.1 MGP_CASTEiJ_G0033457.1 mouse_genomes_project 9 18790730 18868755 + Dnm2 protein_coding processed_transcript MGP_CASTEiJ_T0091590.1 MGP_CASTEiJ_G0033457.1 mouse_genomes_project 9 18790731 18883654 + MGP_CASTEiJ_P0091590 Dnm2 protein_coding protein_coding MGP_CASTEiJ_T0091591.1 MGP_CASTEiJ_G0033457.1 mouse_genomes_project 9 18825339 18825803 + Dnm2 protein_coding processed_transcript MGP_CASTEiJ_T0091592.1 MGP_CASTEiJ_G0033457.1 mouse_genomes_project 9 18854061 18876609 + MGP_CASTEiJ_P0091592 Dnm2 protein_coding protein_coding MGP_CASTEiJ_T0091593.1 MGP_CASTEiJ_G0033457.1 mouse_genomes_project 9 18857913 18883659 + Dnm2 protein_coding retained_intron MGP_CASTEiJ_T0091594.1 MGP_CASTEiJ_G0033457.1 mouse_genomes_project 9 18871187 18880523 + Dnm2 protein_coding retained_intron MGP_CASTEiJ_T0091595.1 MGP_CASTEiJ_G0033457.1 mouse_genomes_project 9 18881007 18882300 + Dnm2 protein_coding processed_transcript MGP_CASTEiJ_T0009096.1 MGP_CASTEiJ_G0007325.1 mouse_genomes_project 9 108456555 108459814 - Lsmem2 lincRNA lincRNA MGP_CASTEiJ_T0091874.1 MGP_CASTEiJ_G0033554.1 mouse_genomes_project 9 34435877 34448942 - MGP_CASTEiJ_P0091874 Gm5615 protein_coding protein_coding MGP_CASTEiJ_T0002301.1 MGP_CASTEiJ_G0002219.1 mouse_genomes_project 9 72495235 72497984 + TEC TEC MGP_CASTEiJ_T0005394.1 MGP_CASTEiJ_G0004559.1 mouse_genomes_project 9 108436636 108450100 - Gm16343 antisense antisense MGP_CASTEiJ_T0101404.1 MGP_CASTEiJ_G0038317.1 mouse_genomes_project 9 97761399 97761526 - Gm25607 snoRNA snoRNA MGP_CASTEiJ_T0015511.1 MGP_CASTEiJ_G0013674.1 mouse_genomes_project 9 95819272 95819734 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093493.1 MGP_CASTEiJ_G0034058.1 mouse_genomes_project 9 78127664 78168482 + MGP_CASTEiJ_P0093493 Gclc protein_coding protein_coding MGP_CASTEiJ_T0092517.1 MGP_CASTEiJ_G0033803.1 mouse_genomes_project 9 50057904 50085267 + MGP_CASTEiJ_P0092517 Pou2af1 protein_coding protein_coding MGP_CASTEiJ_T0095506.1 MGP_CASTEiJ_G0034451.1 mouse_genomes_project 9 124708362 124741858 + MGP_CASTEiJ_P0095506 Tcaim protein_coding protein_coding MGP_CASTEiJ_T0095507.1 MGP_CASTEiJ_G0034451.1 mouse_genomes_project 9 124708366 124744455 + MGP_CASTEiJ_P0095507 Tcaim protein_coding unknown_likely_coding MGP_CASTEiJ_T0095508.1 MGP_CASTEiJ_G0034451.1 mouse_genomes_project 9 124708384 124714673 + Tcaim protein_coding processed_transcript MGP_CASTEiJ_T0095509.1 MGP_CASTEiJ_G0034451.1 mouse_genomes_project 9 124708419 124741851 + MGP_CASTEiJ_P0095509 Tcaim protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0015463.1 MGP_CASTEiJ_G0013626.1 mouse_genomes_project 9 74886667 74886974 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010759.1 MGP_CASTEiJ_G0008947.1 mouse_genomes_project 9 61621616 61621693 - Mir5133 miRNA miRNA MGP_CASTEiJ_T0002352.1 MGP_CASTEiJ_G0002269.1 mouse_genomes_project 9 100581273 100584216 - TEC TEC MGP_CASTEiJ_T0093432.1 MGP_CASTEiJ_G0034039.1 mouse_genomes_project 9 75444477 75521091 + MGP_CASTEiJ_P0093432 Myo5c protein_coding protein_coding MGP_CASTEiJ_T0092171.1 MGP_CASTEiJ_G0033699.1 mouse_genomes_project 9 42584325 42672763 - MGP_CASTEiJ_P0092171 Cbl protein_coding protein_coding MGP_CASTEiJ_T0092172.1 MGP_CASTEiJ_G0033699.1 mouse_genomes_project 9 42584326 42672703 - MGP_CASTEiJ_P0092172 Cbl protein_coding protein_coding MGP_CASTEiJ_T0092173.1 MGP_CASTEiJ_G0033699.1 mouse_genomes_project 9 42584331 42587598 - Cbl protein_coding processed_transcript MGP_CASTEiJ_T0092174.1 MGP_CASTEiJ_G0033699.1 mouse_genomes_project 9 42591644 42672698 - MGP_CASTEiJ_P0092174 Cbl protein_coding protein_coding MGP_CASTEiJ_T0092175.1 MGP_CASTEiJ_G0033699.1 mouse_genomes_project 9 42594710 42595890 - MGP_CASTEiJ_P0092175 Cbl protein_coding protein_coding MGP_CASTEiJ_T0092176.1 MGP_CASTEiJ_G0033699.1 mouse_genomes_project 9 42595249 42595863 - Cbl protein_coding retained_intron MGP_CASTEiJ_T0092177.1 MGP_CASTEiJ_G0033699.1 mouse_genomes_project 9 42595409 42598679 - Cbl protein_coding retained_intron MGP_CASTEiJ_T0092178.1 MGP_CASTEiJ_G0033699.1 mouse_genomes_project 9 42601685 42606240 - MGP_CASTEiJ_P0092178 Cbl protein_coding protein_coding MGP_CASTEiJ_T0092179.1 MGP_CASTEiJ_G0033699.1 mouse_genomes_project 9 42611138 42628159 - Cbl protein_coding processed_transcript MGP_CASTEiJ_T0092180.1 MGP_CASTEiJ_G0033699.1 mouse_genomes_project 9 42615485 42672258 - MGP_CASTEiJ_P0092180 Cbl protein_coding protein_coding MGP_CASTEiJ_T0092027.1 MGP_CASTEiJ_G0033636.1 mouse_genomes_project 9 37630808 37631862 - MGP_CASTEiJ_P0092027 protein_coding protein_coding MGP_CASTEiJ_T0093239.1 MGP_CASTEiJ_G0034005.1 mouse_genomes_project 9 70579879 70632827 + MGP_CASTEiJ_P0093239 Sltm protein_coding protein_coding MGP_CASTEiJ_T0015533.1 MGP_CASTEiJ_G0013696.1 mouse_genomes_project 9 104516371 104516765 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101361.1 MGP_CASTEiJ_G0038274.1 mouse_genomes_project 9 18215048 18215128 + Gm23008 snoRNA snoRNA MGP_CASTEiJ_T0091703.1 MGP_CASTEiJ_G0033503.1 mouse_genomes_project 9 24301151 24328781 + MGP_CASTEiJ_P0091703 B3gat1 protein_coding protein_coding MGP_CASTEiJ_T0091704.1 MGP_CASTEiJ_G0033503.1 mouse_genomes_project 9 24301226 24323493 + MGP_CASTEiJ_P0091704 B3gat1 protein_coding protein_coding MGP_CASTEiJ_T0091705.1 MGP_CASTEiJ_G0033503.1 mouse_genomes_project 9 24301247 24330523 + MGP_CASTEiJ_P0091705 B3gat1 protein_coding protein_coding MGP_CASTEiJ_T0091706.1 MGP_CASTEiJ_G0033503.1 mouse_genomes_project 9 24301274 24325392 + MGP_CASTEiJ_P0091706 B3gat1 protein_coding protein_coding MGP_CASTEiJ_T0091707.1 MGP_CASTEiJ_G0033503.1 mouse_genomes_project 9 24319157 24326298 + MGP_CASTEiJ_P0091707 B3gat1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091708.1 MGP_CASTEiJ_G0033503.1 mouse_genomes_project 9 24322697 24330529 + MGP_CASTEiJ_P0091708 B3gat1 protein_coding protein_coding MGP_CASTEiJ_T0091311.1 MGP_CASTEiJ_G0033352.1 mouse_genomes_project 9 10366446 10704815 + MGP_CASTEiJ_P0091311 protein_coding protein_coding MGP_CASTEiJ_T0091313.1 MGP_CASTEiJ_G0033352.1 mouse_genomes_project 9 10616367 10708674 + MGP_CASTEiJ_P0091313 protein_coding protein_coding MGP_CASTEiJ_T0091314.1 MGP_CASTEiJ_G0033352.1 mouse_genomes_project 9 10618023 10706624 + MGP_CASTEiJ_P0091314 protein_coding protein_coding MGP_CASTEiJ_T0091315.1 MGP_CASTEiJ_G0033352.1 mouse_genomes_project 9 10661115 10706626 + protein_coding processed_transcript MGP_CASTEiJ_T0002351.1 MGP_CASTEiJ_G0002268.1 mouse_genomes_project 9 99709384 99710074 + TEC TEC MGP_CASTEiJ_T0100163.1 MGP_CASTEiJ_G0037076.1 mouse_genomes_project 9 108803286 108803386 + Gm23856 snRNA snRNA MGP_CASTEiJ_T0002307.1 MGP_CASTEiJ_G0002225.1 mouse_genomes_project 9 73027552 73029483 + TEC TEC MGP_CASTEiJ_T0010789.1 MGP_CASTEiJ_G0008977.1 mouse_genomes_project 9 111315142 111316270 + miRNA miRNA MGP_CASTEiJ_T0091462.1 MGP_CASTEiJ_G0033411.1 mouse_genomes_project 9 16982957 16993909 + MGP_CASTEiJ_P0091462 protein_coding protein_coding MGP_CASTEiJ_T0002390.1 MGP_CASTEiJ_G0002307.1 mouse_genomes_project 9 111024093 111025041 + TEC TEC MGP_CASTEiJ_T0009087.1 MGP_CASTEiJ_G0007318.1 mouse_genomes_project 9 103222760 103223710 + 4930533D04Rik lincRNA lincRNA MGP_CASTEiJ_T0101359.1 MGP_CASTEiJ_G0038272.1 mouse_genomes_project 9 16598116 16598245 + Gm23048 snoRNA snoRNA MGP_CASTEiJ_T0101420.1 MGP_CASTEiJ_G0038333.1 mouse_genomes_project 9 121932889 121933092 + Gm26448 snoRNA snoRNA MGP_CASTEiJ_T0091847.1 MGP_CASTEiJ_G0033539.1 mouse_genomes_project 9 33328079 33363605 + MGP_CASTEiJ_P0091847 Cdon protein_coding protein_coding MGP_CASTEiJ_T0091848.1 MGP_CASTEiJ_G0033539.1 mouse_genomes_project 9 33328505 33363580 + MGP_CASTEiJ_P0091848 Cdon protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091849.1 MGP_CASTEiJ_G0033539.1 mouse_genomes_project 9 33328548 33421707 + MGP_CASTEiJ_P0091849 Cdon protein_coding protein_coding MGP_CASTEiJ_T0091850.1 MGP_CASTEiJ_G0033539.1 mouse_genomes_project 9 33330542 33379823 + MGP_CASTEiJ_P0091850 Cdon protein_coding protein_coding MGP_CASTEiJ_T0091851.1 MGP_CASTEiJ_G0033539.1 mouse_genomes_project 9 33360290 33421706 + MGP_CASTEiJ_P0091851 Cdon protein_coding protein_coding MGP_CASTEiJ_T0091852.1 MGP_CASTEiJ_G0033539.1 mouse_genomes_project 9 33365664 33378754 + MGP_CASTEiJ_P0091852 Cdon protein_coding protein_coding MGP_CASTEiJ_T0005309.1 MGP_CASTEiJ_G0004503.1 mouse_genomes_project 9 55352733 55362669 + Peak1os antisense antisense MGP_CASTEiJ_T0098682.1 MGP_CASTEiJ_G0035613.1 mouse_genomes_project 9 103570091 103570195 - n-R5s89 rRNA rRNA MGP_CASTEiJ_T0092020.1 MGP_CASTEiJ_G0033629.1 mouse_genomes_project 9 37102286 37103407 - MGP_CASTEiJ_P0092020 Olfr938 protein_coding protein_coding MGP_CASTEiJ_T0101372.1 MGP_CASTEiJ_G0038285.1 mouse_genomes_project 9 39002770 39002856 + Snord14d snoRNA snoRNA MGP_CASTEiJ_T0092008.1 MGP_CASTEiJ_G0033617.1 mouse_genomes_project 9 36801533 36802665 + MGP_CASTEiJ_P0092008 Olfr922 protein_coding protein_coding MGP_CASTEiJ_T0002281.1 MGP_CASTEiJ_G0002199.1 mouse_genomes_project 9 30802389 30803737 + TEC TEC MGP_CASTEiJ_T0091346.1 MGP_CASTEiJ_G0033360.1 mouse_genomes_project 9 11523251 11533320 + MGP_CASTEiJ_P0091346 Cwc15 protein_coding protein_coding MGP_CASTEiJ_T0092308.1 MGP_CASTEiJ_G0033745.1 mouse_genomes_project 9 44310480 44373975 - MGP_CASTEiJ_P0092308 Cep164 protein_coding protein_coding MGP_CASTEiJ_T0092309.1 MGP_CASTEiJ_G0033745.1 mouse_genomes_project 9 44314270 44316025 - Cep164 protein_coding retained_intron MGP_CASTEiJ_T0092310.1 MGP_CASTEiJ_G0033745.1 mouse_genomes_project 9 44322545 44347250 - MGP_CASTEiJ_P0092310 Cep164 protein_coding protein_coding MGP_CASTEiJ_T0091344.1 MGP_CASTEiJ_G0033358.1 mouse_genomes_project 9 11368737 11396535 - MGP_CASTEiJ_P0091344 Endod1 protein_coding protein_coding MGP_CASTEiJ_T0094697.1 MGP_CASTEiJ_G0034284.1 mouse_genomes_project 9 109224411 109229645 + Amt protein_coding processed_transcript MGP_CASTEiJ_T0094698.1 MGP_CASTEiJ_G0034284.1 mouse_genomes_project 9 109224428 109230376 + MGP_CASTEiJ_P0094698 Amt protein_coding protein_coding MGP_CASTEiJ_T0094699.1 MGP_CASTEiJ_G0034284.1 mouse_genomes_project 9 109224468 109225090 + Amt protein_coding retained_intron MGP_CASTEiJ_T0094700.1 MGP_CASTEiJ_G0034284.1 mouse_genomes_project 9 109224480 109227523 + Amt protein_coding retained_intron MGP_CASTEiJ_T0094410.1 MGP_CASTEiJ_G0034243.1 mouse_genomes_project 9 108142626 108148587 + MGP_CASTEiJ_P0094410 Cish protein_coding protein_coding MGP_CASTEiJ_T0094411.1 MGP_CASTEiJ_G0034243.1 mouse_genomes_project 9 108143311 108149386 + MGP_CASTEiJ_P0094411 Cish protein_coding protein_coding MGP_CASTEiJ_T0094412.1 MGP_CASTEiJ_G0034243.1 mouse_genomes_project 9 108143508 108148543 + Cish protein_coding processed_transcript MGP_CASTEiJ_T0094413.1 MGP_CASTEiJ_G0034243.1 mouse_genomes_project 9 108143513 108147151 + MGP_CASTEiJ_P0094413 Cish protein_coding protein_coding MGP_CASTEiJ_T0094414.1 MGP_CASTEiJ_G0034243.1 mouse_genomes_project 9 108145749 108147058 + Cish protein_coding processed_transcript MGP_CASTEiJ_T0092275.1 MGP_CASTEiJ_G0033729.1 mouse_genomes_project 9 43472306 43485804 - MGP_CASTEiJ_P0092275 Cd3g protein_coding protein_coding MGP_CASTEiJ_T0092276.1 MGP_CASTEiJ_G0033729.1 mouse_genomes_project 9 43472489 43473550 - Cd3g protein_coding retained_intron MGP_CASTEiJ_T0092277.1 MGP_CASTEiJ_G0033729.1 mouse_genomes_project 9 43476374 43485804 - MGP_CASTEiJ_P0092277 Cd3g protein_coding protein_coding MGP_CASTEiJ_T0093687.1 MGP_CASTEiJ_G0034099.1 mouse_genomes_project 9 87486908 87608454 - MGP_CASTEiJ_P0093687 Snap91 protein_coding protein_coding MGP_CASTEiJ_T0093688.1 MGP_CASTEiJ_G0034099.1 mouse_genomes_project 9 87486918 87533881 - Snap91 protein_coding retained_intron MGP_CASTEiJ_T0093689.1 MGP_CASTEiJ_G0034099.1 mouse_genomes_project 9 87486921 87608464 - MGP_CASTEiJ_P0093689 Snap91 protein_coding protein_coding MGP_CASTEiJ_T0093690.1 MGP_CASTEiJ_G0034099.1 mouse_genomes_project 9 87486921 87608464 - MGP_CASTEiJ_P0093690 Snap91 protein_coding protein_coding MGP_CASTEiJ_T0093691.1 MGP_CASTEiJ_G0034099.1 mouse_genomes_project 9 87487663 87608429 - MGP_CASTEiJ_P0093691 Snap91 protein_coding protein_coding MGP_CASTEiJ_T0093692.1 MGP_CASTEiJ_G0034099.1 mouse_genomes_project 9 87496387 87522409 - Snap91 protein_coding retained_intron MGP_CASTEiJ_T0093693.1 MGP_CASTEiJ_G0034099.1 mouse_genomes_project 9 87516298 87522583 - Snap91 protein_coding retained_intron MGP_CASTEiJ_T0093694.1 MGP_CASTEiJ_G0034099.1 mouse_genomes_project 9 87527892 87608399 - MGP_CASTEiJ_P0093694 Snap91 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093695.1 MGP_CASTEiJ_G0034099.1 mouse_genomes_project 9 87531604 87556765 - Snap91 protein_coding processed_transcript MGP_CASTEiJ_T0093696.1 MGP_CASTEiJ_G0034099.1 mouse_genomes_project 9 87549450 87608669 - Snap91 protein_coding retained_intron MGP_CASTEiJ_T0093697.1 MGP_CASTEiJ_G0034099.1 mouse_genomes_project 9 87562550 87608412 - MGP_CASTEiJ_P0093697 Snap91 protein_coding protein_coding MGP_CASTEiJ_T0093546.1 MGP_CASTEiJ_G0034077.1 mouse_genomes_project 9 80547823 80578212 + Senp6 protein_coding retained_intron MGP_CASTEiJ_T0093547.1 MGP_CASTEiJ_G0034077.1 mouse_genomes_project 9 80547823 80631339 + MGP_CASTEiJ_P0093547 Senp6 protein_coding protein_coding MGP_CASTEiJ_T0093548.1 MGP_CASTEiJ_G0034077.1 mouse_genomes_project 9 80547856 80599490 + MGP_CASTEiJ_P0093548 Senp6 protein_coding protein_coding MGP_CASTEiJ_T0093549.1 MGP_CASTEiJ_G0034077.1 mouse_genomes_project 9 80548019 80631166 + MGP_CASTEiJ_P0093549 Senp6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093550.1 MGP_CASTEiJ_G0034077.1 mouse_genomes_project 9 80548444 80630246 + MGP_CASTEiJ_P0093550 Senp6 protein_coding protein_coding MGP_CASTEiJ_T0093551.1 MGP_CASTEiJ_G0034077.1 mouse_genomes_project 9 80548737 80569542 + Senp6 protein_coding processed_transcript MGP_CASTEiJ_T0093552.1 MGP_CASTEiJ_G0034077.1 mouse_genomes_project 9 80576008 80607154 + MGP_CASTEiJ_P0093552 Senp6 protein_coding protein_coding MGP_CASTEiJ_T0093553.1 MGP_CASTEiJ_G0034077.1 mouse_genomes_project 9 80586891 80630096 + MGP_CASTEiJ_P0093553 Senp6 protein_coding protein_coding MGP_CASTEiJ_T0093554.1 MGP_CASTEiJ_G0034077.1 mouse_genomes_project 9 80599758 80604484 + MGP_CASTEiJ_P0093554 Senp6 protein_coding protein_coding MGP_CASTEiJ_T0093555.1 MGP_CASTEiJ_G0034077.1 mouse_genomes_project 9 80599775 80607226 + Senp6 protein_coding processed_transcript MGP_CASTEiJ_T0093556.1 MGP_CASTEiJ_G0034077.1 mouse_genomes_project 9 80608970 80622905 + MGP_CASTEiJ_P0093556 Senp6 protein_coding protein_coding MGP_CASTEiJ_T0093557.1 MGP_CASTEiJ_G0034077.1 mouse_genomes_project 9 80622705 80630555 + Senp6 protein_coding retained_intron MGP_CASTEiJ_T0093558.1 MGP_CASTEiJ_G0034077.1 mouse_genomes_project 9 80625388 80630093 + Senp6 protein_coding retained_intron MGP_CASTEiJ_T0093559.1 MGP_CASTEiJ_G0034077.1 mouse_genomes_project 9 80628409 80630389 + Senp6 protein_coding retained_intron MGP_CASTEiJ_T0015508.1 MGP_CASTEiJ_G0013671.1 mouse_genomes_project 9 94576954 94577300 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092026.1 MGP_CASTEiJ_G0033635.1 mouse_genomes_project 9 37630768 37641435 - MGP_CASTEiJ_P0092026 protein_coding protein_coding MGP_CASTEiJ_T0093054.1 MGP_CASTEiJ_G0033966.1 mouse_genomes_project 9 65300274 65325915 - MGP_CASTEiJ_P0093054 Plekho2 protein_coding protein_coding MGP_CASTEiJ_T0092521.1 MGP_CASTEiJ_G0033806.1 mouse_genomes_project 9 50492399 50494663 + MGP_CASTEiJ_P0092521 protein_coding protein_coding MGP_CASTEiJ_T0002378.1 MGP_CASTEiJ_G0002295.1 mouse_genomes_project 9 106865458 106868444 + TEC TEC MGP_CASTEiJ_T0015468.1 MGP_CASTEiJ_G0013631.1 mouse_genomes_project 9 77075403 77076299 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009065.1 MGP_CASTEiJ_G0007301.1 mouse_genomes_project 9 92839653 92869366 + lincRNA lincRNA MGP_CASTEiJ_T0009066.1 MGP_CASTEiJ_G0007301.1 mouse_genomes_project 9 92840912 92925428 + lincRNA lincRNA MGP_CASTEiJ_T0098676.1 MGP_CASTEiJ_G0035607.1 mouse_genomes_project 9 74229359 74229478 + n-R5s86 rRNA rRNA MGP_CASTEiJ_T0095389.1 MGP_CASTEiJ_G0034416.1 mouse_genomes_project 9 121720054 121752700 + MGP_CASTEiJ_P0095389 Ttc21a protein_coding protein_coding MGP_CASTEiJ_T0095390.1 MGP_CASTEiJ_G0034416.1 mouse_genomes_project 9 121720083 121751951 + Ttc21a protein_coding retained_intron MGP_CASTEiJ_T0095391.1 MGP_CASTEiJ_G0034416.1 mouse_genomes_project 9 121720084 121746530 + Ttc21a protein_coding retained_intron MGP_CASTEiJ_T0095392.1 MGP_CASTEiJ_G0034416.1 mouse_genomes_project 9 121745483 121751068 + Ttc21a protein_coding retained_intron MGP_CASTEiJ_T0091969.1 MGP_CASTEiJ_G0033585.1 mouse_genomes_project 9 35977253 35978183 + MGP_CASTEiJ_P0091969 Olfr883 protein_coding protein_coding MGP_CASTEiJ_T0091973.1 MGP_CASTEiJ_G0033588.1 mouse_genomes_project 9 36040765 36041695 + MGP_CASTEiJ_P0091973 Olfr887 protein_coding protein_coding MGP_CASTEiJ_T0095191.1 MGP_CASTEiJ_G0034362.1 mouse_genomes_project 9 112374849 112382016 + MGP_CASTEiJ_P0095191 Epm2aip1 protein_coding protein_coding MGP_CASTEiJ_T0095192.1 MGP_CASTEiJ_G0034362.1 mouse_genomes_project 9 112374865 112382020 + MGP_CASTEiJ_P0095192 Epm2aip1 protein_coding protein_coding MGP_CASTEiJ_T0095193.1 MGP_CASTEiJ_G0034362.1 mouse_genomes_project 9 112377022 112380462 + Epm2aip1 protein_coding processed_transcript MGP_CASTEiJ_T0092021.1 MGP_CASTEiJ_G0033630.1 mouse_genomes_project 9 37182721 37272976 + MGP_CASTEiJ_P0092021 protein_coding protein_coding MGP_CASTEiJ_T0091623.1 MGP_CASTEiJ_G0033469.1 mouse_genomes_project 9 19309037 19320082 - MGP_CASTEiJ_P0091623 Rab3d protein_coding protein_coding MGP_CASTEiJ_T0091624.1 MGP_CASTEiJ_G0033469.1 mouse_genomes_project 9 19309058 19320029 - MGP_CASTEiJ_P0091624 Rab3d protein_coding protein_coding MGP_CASTEiJ_T0091625.1 MGP_CASTEiJ_G0033469.1 mouse_genomes_project 9 19310177 19320007 - MGP_CASTEiJ_P0091625 Rab3d protein_coding protein_coding MGP_CASTEiJ_T0091626.1 MGP_CASTEiJ_G0033469.1 mouse_genomes_project 9 19316772 19319979 - MGP_CASTEiJ_P0091626 Rab3d protein_coding protein_coding MGP_CASTEiJ_T0091627.1 MGP_CASTEiJ_G0033469.1 mouse_genomes_project 9 19317496 19320011 - Rab3d protein_coding retained_intron MGP_CASTEiJ_T0002398.1 MGP_CASTEiJ_G0002315.1 mouse_genomes_project 9 115438506 115439479 - TEC TEC MGP_CASTEiJ_T0002364.1 MGP_CASTEiJ_G0002281.1 mouse_genomes_project 9 102691867 102696261 + TEC TEC MGP_CASTEiJ_T0017778.1 MGP_CASTEiJ_G0015052.1 mouse_genomes_project 9 42545635 42547295 - Gm20444 processed_transcript processed_transcript MGP_CASTEiJ_T0092290.1 MGP_CASTEiJ_G0033737.1 mouse_genomes_project 9 43655090 43671398 + MGP_CASTEiJ_P0092290 Scn4b protein_coding protein_coding MGP_CASTEiJ_T0092907.1 MGP_CASTEiJ_G0033920.1 mouse_genomes_project 9 61401886 61433358 - MGP_CASTEiJ_P0092907 Kif23 protein_coding protein_coding MGP_CASTEiJ_T0092908.1 MGP_CASTEiJ_G0033920.1 mouse_genomes_project 9 61402269 61433181 - MGP_CASTEiJ_P0092908 Kif23 protein_coding unknown_likely_coding MGP_CASTEiJ_T0017760.1 MGP_CASTEiJ_G0015049.1 mouse_genomes_project 9 38491472 38511507 + 1700110K17Rik processed_transcript processed_transcript MGP_CASTEiJ_T0017761.1 MGP_CASTEiJ_G0015049.1 mouse_genomes_project 9 38501379 38511501 + 1700110K17Rik processed_transcript processed_transcript MGP_CASTEiJ_T0092756.1 MGP_CASTEiJ_G0033888.1 mouse_genomes_project 9 57326831 57409142 + Stra6 protein_coding retained_intron MGP_CASTEiJ_T0092759.1 MGP_CASTEiJ_G0033888.1 mouse_genomes_project 9 57342326 57408333 + MGP_CASTEiJ_P0092759 Stra6 protein_coding protein_coding MGP_CASTEiJ_T0092760.1 MGP_CASTEiJ_G0033888.1 mouse_genomes_project 9 57342401 57406546 + MGP_CASTEiJ_P0092760 Stra6 protein_coding protein_coding MGP_CASTEiJ_T0092763.1 MGP_CASTEiJ_G0033888.1 mouse_genomes_project 9 57396192 57421467 + MGP_CASTEiJ_P0092763 Stra6 protein_coding protein_coding MGP_CASTEiJ_T0092764.1 MGP_CASTEiJ_G0033888.1 mouse_genomes_project 9 57396453 57421465 + MGP_CASTEiJ_P0092764 Stra6 protein_coding protein_coding MGP_CASTEiJ_T0092765.1 MGP_CASTEiJ_G0033888.1 mouse_genomes_project 9 57396605 57407982 + MGP_CASTEiJ_P0092765 Stra6 protein_coding protein_coding MGP_CASTEiJ_T0092766.1 MGP_CASTEiJ_G0033888.1 mouse_genomes_project 9 57399008 57407555 + MGP_CASTEiJ_P0092766 Stra6 protein_coding protein_coding MGP_CASTEiJ_T0092767.1 MGP_CASTEiJ_G0033888.1 mouse_genomes_project 9 57401128 57408307 + MGP_CASTEiJ_P0092767 Stra6 protein_coding protein_coding MGP_CASTEiJ_T0092768.1 MGP_CASTEiJ_G0033888.1 mouse_genomes_project 9 57401186 57421508 + MGP_CASTEiJ_P0092768 Stra6 protein_coding protein_coding MGP_CASTEiJ_T0092769.1 MGP_CASTEiJ_G0033888.1 mouse_genomes_project 9 57401186 57408223 + MGP_CASTEiJ_P0092769 Stra6 protein_coding protein_coding MGP_CASTEiJ_T0092770.1 MGP_CASTEiJ_G0033888.1 mouse_genomes_project 9 57401646 57408229 + MGP_CASTEiJ_P0092770 Stra6 protein_coding protein_coding MGP_CASTEiJ_T0092771.1 MGP_CASTEiJ_G0033888.1 mouse_genomes_project 9 57401776 57421508 + MGP_CASTEiJ_P0092771 Stra6 protein_coding protein_coding MGP_CASTEiJ_T0092772.1 MGP_CASTEiJ_G0033888.1 mouse_genomes_project 9 57401776 57408239 + MGP_CASTEiJ_P0092772 Stra6 protein_coding protein_coding MGP_CASTEiJ_T0092773.1 MGP_CASTEiJ_G0033888.1 mouse_genomes_project 9 57401921 57406477 + MGP_CASTEiJ_P0092773 Stra6 protein_coding protein_coding MGP_CASTEiJ_T0092056.1 MGP_CASTEiJ_G0033659.1 mouse_genomes_project 9 38155829 38156765 + MGP_CASTEiJ_P0092056 Olfr978 protein_coding protein_coding MGP_CASTEiJ_T0092840.1 MGP_CASTEiJ_G0033907.1 mouse_genomes_project 9 58985918 59020358 + MGP_CASTEiJ_P0092840 Parp6 protein_coding protein_coding MGP_CASTEiJ_T0009004.1 MGP_CASTEiJ_G0007252.1 mouse_genomes_project 9 43943386 43958617 - 4833428L15Rik lincRNA lincRNA MGP_CASTEiJ_T0005290.1 MGP_CASTEiJ_G0004492.1 mouse_genomes_project 9 40809456 40841591 + Gm16322 antisense antisense MGP_CASTEiJ_T0005291.1 MGP_CASTEiJ_G0004492.1 mouse_genomes_project 9 40810477 40839327 + Gm16322 antisense antisense MGP_CASTEiJ_T0095478.1 MGP_CASTEiJ_G0034440.1 mouse_genomes_project 9 123697934 123748815 - MGP_CASTEiJ_P0095478 Ccdc13 protein_coding protein_coding MGP_CASTEiJ_T0095479.1 MGP_CASTEiJ_G0034440.1 mouse_genomes_project 9 123697940 123716815 - MGP_CASTEiJ_P0095479 Ccdc13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095480.1 MGP_CASTEiJ_G0034440.1 mouse_genomes_project 9 123698459 123716961 - Ccdc13 protein_coding retained_intron MGP_CASTEiJ_T0095481.1 MGP_CASTEiJ_G0034440.1 mouse_genomes_project 9 123698807 123716797 - MGP_CASTEiJ_P0095481 Ccdc13 protein_coding protein_coding MGP_CASTEiJ_T0095482.1 MGP_CASTEiJ_G0034440.1 mouse_genomes_project 9 123699318 123716900 - Ccdc13 protein_coding retained_intron MGP_CASTEiJ_T0095483.1 MGP_CASTEiJ_G0034440.1 mouse_genomes_project 9 123725671 123739092 - Ccdc13 protein_coding retained_intron MGP_CASTEiJ_T0002329.1 MGP_CASTEiJ_G0002246.1 mouse_genomes_project 9 87909482 87910560 - TEC TEC MGP_CASTEiJ_T0095121.1 MGP_CASTEiJ_G0034346.1 mouse_genomes_project 9 111869474 111875066 + MGP_CASTEiJ_P0095121 Prss42 protein_coding protein_coding MGP_CASTEiJ_T0101383.1 MGP_CASTEiJ_G0038296.1 mouse_genomes_project 9 63814085 63814155 + Gm22571 snoRNA snoRNA MGP_CASTEiJ_T0002399.1 MGP_CASTEiJ_G0002316.1 mouse_genomes_project 9 120036406 120037244 - TEC TEC MGP_CASTEiJ_T0092051.1 MGP_CASTEiJ_G0033654.1 mouse_genomes_project 9 38031341 38032265 + MGP_CASTEiJ_P0092051 Olfr971 protein_coding protein_coding MGP_CASTEiJ_T0092281.1 MGP_CASTEiJ_G0033733.1 mouse_genomes_project 9 43571974 43594178 + MGP_CASTEiJ_P0092281 Mpzl3 protein_coding protein_coding MGP_CASTEiJ_T0092282.1 MGP_CASTEiJ_G0033733.1 mouse_genomes_project 9 43571976 43581975 + Mpzl3 protein_coding retained_intron MGP_CASTEiJ_T0092283.1 MGP_CASTEiJ_G0033733.1 mouse_genomes_project 9 43571997 43583273 + MGP_CASTEiJ_P0092283 Mpzl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092284.1 MGP_CASTEiJ_G0033733.1 mouse_genomes_project 9 43576044 43582459 + Mpzl3 protein_coding retained_intron MGP_CASTEiJ_T0092285.1 MGP_CASTEiJ_G0033733.1 mouse_genomes_project 9 43587412 43591904 + Mpzl3 protein_coding retained_intron MGP_CASTEiJ_T0002356.1 MGP_CASTEiJ_G0002273.1 mouse_genomes_project 9 101607269 101609308 + TEC TEC MGP_CASTEiJ_T0092662.1 MGP_CASTEiJ_G0033855.1 mouse_genomes_project 9 55736052 55807633 - MGP_CASTEiJ_P0092662 Lingo1 protein_coding protein_coding MGP_CASTEiJ_T0092663.1 MGP_CASTEiJ_G0033855.1 mouse_genomes_project 9 55736663 55753154 - MGP_CASTEiJ_P0092663 Lingo1 protein_coding protein_coding MGP_CASTEiJ_T0092664.1 MGP_CASTEiJ_G0033855.1 mouse_genomes_project 9 55736680 55765173 - MGP_CASTEiJ_P0092664 Lingo1 protein_coding protein_coding MGP_CASTEiJ_T0092956.1 MGP_CASTEiJ_G0033934.1 mouse_genomes_project 9 63008638 63201226 - MGP_CASTEiJ_P0092956 Iqch protein_coding protein_coding MGP_CASTEiJ_T0092957.1 MGP_CASTEiJ_G0033934.1 mouse_genomes_project 9 63008804 63201181 - MGP_CASTEiJ_P0092957 Iqch protein_coding protein_coding MGP_CASTEiJ_T0092958.1 MGP_CASTEiJ_G0033934.1 mouse_genomes_project 9 63008804 63201181 - MGP_CASTEiJ_P0092958 Iqch protein_coding protein_coding MGP_CASTEiJ_T0092959.1 MGP_CASTEiJ_G0033934.1 mouse_genomes_project 9 63008846 63201216 - MGP_CASTEiJ_P0092959 Iqch protein_coding protein_coding MGP_CASTEiJ_T0092960.1 MGP_CASTEiJ_G0033934.1 mouse_genomes_project 9 63009019 63201150 - MGP_CASTEiJ_P0092960 Iqch protein_coding protein_coding MGP_CASTEiJ_T0092961.1 MGP_CASTEiJ_G0033934.1 mouse_genomes_project 9 63181496 63201218 - Iqch protein_coding retained_intron MGP_CASTEiJ_T0095554.1 MGP_CASTEiJ_G0034470.1 mouse_genomes_project 9 125627582 125750083 + MGP_CASTEiJ_P0095554 Ccr9 protein_coding protein_coding MGP_CASTEiJ_T0095562.1 MGP_CASTEiJ_G0034470.1 mouse_genomes_project 9 125735768 125750081 + MGP_CASTEiJ_P0095562 Ccr9 protein_coding protein_coding MGP_CASTEiJ_T0095563.1 MGP_CASTEiJ_G0034470.1 mouse_genomes_project 9 125735784 125749644 + MGP_CASTEiJ_P0095563 Ccr9 protein_coding protein_coding MGP_CASTEiJ_T0095564.1 MGP_CASTEiJ_G0034470.1 mouse_genomes_project 9 125735786 125750089 + MGP_CASTEiJ_P0095564 Ccr9 protein_coding protein_coding MGP_CASTEiJ_T0095565.1 MGP_CASTEiJ_G0034470.1 mouse_genomes_project 9 125742926 125751588 + MGP_CASTEiJ_P0095565 Ccr9 protein_coding protein_coding MGP_CASTEiJ_T0092065.1 MGP_CASTEiJ_G0033668.1 mouse_genomes_project 9 38364016 38365032 + MGP_CASTEiJ_P0092065 Olfr986 protein_coding protein_coding MGP_CASTEiJ_T0093464.1 MGP_CASTEiJ_G0034054.1 mouse_genomes_project 9 77276537 77379808 - MGP_CASTEiJ_P0093464 Tinag protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093465.1 MGP_CASTEiJ_G0034054.1 mouse_genomes_project 9 77276537 77379853 - MGP_CASTEiJ_P0093465 Tinag protein_coding protein_coding MGP_CASTEiJ_T0009042.1 MGP_CASTEiJ_G0007282.1 mouse_genomes_project 9 77380742 77386017 + Gm19541 lincRNA lincRNA MGP_CASTEiJ_T0002386.1 MGP_CASTEiJ_G0002303.1 mouse_genomes_project 9 109484983 109486415 + TEC TEC MGP_CASTEiJ_T0091279.1 MGP_CASTEiJ_G0033342.1 mouse_genomes_project 9 4987472 5062748 - MGP_CASTEiJ_P0091279 Yap1 protein_coding protein_coding MGP_CASTEiJ_T0091280.1 MGP_CASTEiJ_G0033342.1 mouse_genomes_project 9 4987472 5062756 - MGP_CASTEiJ_P0091280 Yap1 protein_coding protein_coding MGP_CASTEiJ_T0091281.1 MGP_CASTEiJ_G0033342.1 mouse_genomes_project 9 4989970 5062550 - MGP_CASTEiJ_P0091281 Yap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091282.1 MGP_CASTEiJ_G0033342.1 mouse_genomes_project 9 4989970 5062550 - MGP_CASTEiJ_P0091282 Yap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091283.1 MGP_CASTEiJ_G0033342.1 mouse_genomes_project 9 4989970 5058243 - MGP_CASTEiJ_P0091283 Yap1 protein_coding protein_coding MGP_CASTEiJ_T0091284.1 MGP_CASTEiJ_G0033342.1 mouse_genomes_project 9 4989970 5062550 - MGP_CASTEiJ_P0091284 Yap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091285.1 MGP_CASTEiJ_G0033342.1 mouse_genomes_project 9 5018770 5022290 - Yap1 protein_coding processed_transcript MGP_CASTEiJ_T0091286.1 MGP_CASTEiJ_G0033342.1 mouse_genomes_project 9 5030441 5060300 - Yap1 protein_coding processed_transcript MGP_CASTEiJ_T0091287.1 MGP_CASTEiJ_G0033342.1 mouse_genomes_project 9 5030483 5060318 - Yap1 protein_coding processed_transcript MGP_CASTEiJ_T0091288.1 MGP_CASTEiJ_G0033342.1 mouse_genomes_project 9 5053375 5062756 - Yap1 protein_coding retained_intron MGP_CASTEiJ_T0094701.1 MGP_CASTEiJ_G0034285.1 mouse_genomes_project 9 109231030 109234060 - MGP_CASTEiJ_P0094701 Tcta protein_coding protein_coding MGP_CASTEiJ_T0094702.1 MGP_CASTEiJ_G0034285.1 mouse_genomes_project 9 109231726 109234230 - MGP_CASTEiJ_P0094702 Tcta protein_coding protein_coding MGP_CASTEiJ_T0094703.1 MGP_CASTEiJ_G0034285.1 mouse_genomes_project 9 109231962 109234018 - MGP_CASTEiJ_P0094703 Tcta protein_coding protein_coding MGP_CASTEiJ_T0002299.1 MGP_CASTEiJ_G0002217.1 mouse_genomes_project 9 72464054 72465604 + TEC TEC MGP_CASTEiJ_T0009010.1 MGP_CASTEiJ_G0007256.1 mouse_genomes_project 9 52203891 52221073 + 4930510E17Rik lincRNA lincRNA MGP_CASTEiJ_T0093449.1 MGP_CASTEiJ_G0034049.1 mouse_genomes_project 9 76014131 76151349 + MGP_CASTEiJ_P0093449 Bmp5 protein_coding protein_coding MGP_CASTEiJ_T0093450.1 MGP_CASTEiJ_G0034049.1 mouse_genomes_project 9 76072871 76089453 + Bmp5 protein_coding processed_transcript MGP_CASTEiJ_T0092569.1 MGP_CASTEiJ_G0033826.1 mouse_genomes_project 9 53149348 53178781 - MGP_CASTEiJ_P0092569 Cyp19a1 protein_coding protein_coding MGP_CASTEiJ_T0101357.1 MGP_CASTEiJ_G0038270.1 mouse_genomes_project 9 12424642 12424712 - Scarna9 snoRNA snoRNA MGP_CASTEiJ_T0092329.1 MGP_CASTEiJ_G0033749.1 mouse_genomes_project 9 44483957 44490327 - MGP_CASTEiJ_P0092329 Tagln protein_coding protein_coding MGP_CASTEiJ_T0092817.1 MGP_CASTEiJ_G0033899.1 mouse_genomes_project 9 58126294 58170285 + MGP_CASTEiJ_P0092817 Hcn4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092818.1 MGP_CASTEiJ_G0033899.1 mouse_genomes_project 9 58126333 58164256 + MGP_CASTEiJ_P0092818 Hcn4 protein_coding protein_coding MGP_CASTEiJ_T0092672.1 MGP_CASTEiJ_G0033861.1 mouse_genomes_project 9 56151421 56231945 + MGP_CASTEiJ_P0092672 Ptpn9 protein_coding protein_coding MGP_CASTEiJ_T0092046.1 MGP_CASTEiJ_G0033649.1 mouse_genomes_project 9 37932421 37933354 + MGP_CASTEiJ_P0092046 Olfr967 protein_coding protein_coding MGP_CASTEiJ_T0002360.1 MGP_CASTEiJ_G0002277.1 mouse_genomes_project 9 101674758 101677458 - TEC TEC MGP_CASTEiJ_T0095372.1 MGP_CASTEiJ_G0034406.1 mouse_genomes_project 9 121087828 121130974 + MGP_CASTEiJ_P0095372 Xylb protein_coding protein_coding MGP_CASTEiJ_T0093700.1 MGP_CASTEiJ_G0034101.1 mouse_genomes_project 9 87749099 87807615 + MGP_CASTEiJ_P0093700 Cyb5r4 protein_coding protein_coding MGP_CASTEiJ_T0093701.1 MGP_CASTEiJ_G0034101.1 mouse_genomes_project 9 87749149 87765839 + MGP_CASTEiJ_P0093701 Cyb5r4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093702.1 MGP_CASTEiJ_G0034101.1 mouse_genomes_project 9 87749172 87800813 + Cyb5r4 protein_coding processed_transcript MGP_CASTEiJ_T0093703.1 MGP_CASTEiJ_G0034101.1 mouse_genomes_project 9 87756571 87775743 + Cyb5r4 protein_coding retained_intron MGP_CASTEiJ_T0015544.1 MGP_CASTEiJ_G0013707.1 mouse_genomes_project 9 112167701 112168053 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092070.1 MGP_CASTEiJ_G0033671.1 mouse_genomes_project 9 38438398 38448644 + Scn3b protein_coding processed_transcript MGP_CASTEiJ_T0092071.1 MGP_CASTEiJ_G0033671.1 mouse_genomes_project 9 38438402 38460122 + MGP_CASTEiJ_P0092071 Scn3b protein_coding protein_coding MGP_CASTEiJ_T0092072.1 MGP_CASTEiJ_G0033671.1 mouse_genomes_project 9 38438409 38447301 + Scn3b protein_coding retained_intron MGP_CASTEiJ_T0092073.1 MGP_CASTEiJ_G0033671.1 mouse_genomes_project 9 38438558 38446545 + Scn3b protein_coding retained_intron MGP_CASTEiJ_T0092074.1 MGP_CASTEiJ_G0033671.1 mouse_genomes_project 9 38438816 38456894 + MGP_CASTEiJ_P0092074 Scn3b protein_coding protein_coding MGP_CASTEiJ_T0092075.1 MGP_CASTEiJ_G0033671.1 mouse_genomes_project 9 38439122 38461578 + MGP_CASTEiJ_P0092075 Scn3b protein_coding protein_coding MGP_CASTEiJ_T0094402.1 MGP_CASTEiJ_G0034242.1 mouse_genomes_project 9 108094982 108136497 - MGP_CASTEiJ_P0094402 Mapkapk3 protein_coding protein_coding MGP_CASTEiJ_T0094403.1 MGP_CASTEiJ_G0034242.1 mouse_genomes_project 9 108094990 108136365 - Mapkapk3 protein_coding retained_intron MGP_CASTEiJ_T0094404.1 MGP_CASTEiJ_G0034242.1 mouse_genomes_project 9 108096060 108097319 - Mapkapk3 protein_coding retained_intron MGP_CASTEiJ_T0094405.1 MGP_CASTEiJ_G0034242.1 mouse_genomes_project 9 108096199 108135962 - MGP_CASTEiJ_P0094405 Mapkapk3 protein_coding protein_coding MGP_CASTEiJ_T0094406.1 MGP_CASTEiJ_G0034242.1 mouse_genomes_project 9 108098986 108102165 - Mapkapk3 protein_coding processed_transcript MGP_CASTEiJ_T0094407.1 MGP_CASTEiJ_G0034242.1 mouse_genomes_project 9 108099745 108136397 - Mapkapk3 protein_coding retained_intron MGP_CASTEiJ_T0094408.1 MGP_CASTEiJ_G0034242.1 mouse_genomes_project 9 108103934 108122698 - MGP_CASTEiJ_P0094408 Mapkapk3 protein_coding protein_coding MGP_CASTEiJ_T0094409.1 MGP_CASTEiJ_G0034242.1 mouse_genomes_project 9 108131292 108136397 - Mapkapk3 protein_coding processed_transcript MGP_CASTEiJ_T0091645.1 MGP_CASTEiJ_G0033480.1 mouse_genomes_project 9 19486273 19501634 - MGP_CASTEiJ_P0091645 Ecsit protein_coding protein_coding MGP_CASTEiJ_T0091646.1 MGP_CASTEiJ_G0033480.1 mouse_genomes_project 9 19486273 19501598 - MGP_CASTEiJ_P0091646 Ecsit protein_coding protein_coding MGP_CASTEiJ_T0091647.1 MGP_CASTEiJ_G0033480.1 mouse_genomes_project 9 19486273 19501623 - MGP_CASTEiJ_P0091647 Ecsit protein_coding protein_coding MGP_CASTEiJ_T0091648.1 MGP_CASTEiJ_G0033480.1 mouse_genomes_project 9 19487513 19501623 - MGP_CASTEiJ_P0091648 Ecsit protein_coding protein_coding MGP_CASTEiJ_T0002347.1 MGP_CASTEiJ_G0002264.1 mouse_genomes_project 9 98837212 98838397 + TEC TEC MGP_CASTEiJ_T0095268.1 MGP_CASTEiJ_G0034380.1 mouse_genomes_project 9 115962984 116021429 - MGP_CASTEiJ_P0095268 Cnot10 protein_coding protein_coding MGP_CASTEiJ_T0101352.1 MGP_CASTEiJ_G0038265.1 mouse_genomes_project 9 12410707 12410838 + Gm24455 snoRNA snoRNA MGP_CASTEiJ_T0091871.1 MGP_CASTEiJ_G0033551.1 mouse_genomes_project 9 33874403 33875646 + MGP_CASTEiJ_P0091871 9230113P08Rik protein_coding protein_coding MGP_CASTEiJ_T0095546.1 MGP_CASTEiJ_G0034467.1 mouse_genomes_project 9 125485083 125505225 + MGP_CASTEiJ_P0095546 Sacm1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0095547.1 MGP_CASTEiJ_G0034467.1 mouse_genomes_project 9 125485112 125549800 + MGP_CASTEiJ_P0095547 Sacm1l protein_coding protein_coding MGP_CASTEiJ_T0094148.1 MGP_CASTEiJ_G0034197.1 mouse_genomes_project 9 104629577 104675692 + Nphp3 protein_coding retained_intron MGP_CASTEiJ_T0094149.1 MGP_CASTEiJ_G0034197.1 mouse_genomes_project 9 104629579 104683218 + MGP_CASTEiJ_P0094149 Nphp3 protein_coding protein_coding MGP_CASTEiJ_T0094150.1 MGP_CASTEiJ_G0034197.1 mouse_genomes_project 9 104629687 104801543 + MGP_CASTEiJ_P0094150 Nphp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094151.1 MGP_CASTEiJ_G0034197.1 mouse_genomes_project 9 104629687 104682539 + MGP_CASTEiJ_P0094151 Nphp3 protein_coding protein_coding MGP_CASTEiJ_T0094152.1 MGP_CASTEiJ_G0034197.1 mouse_genomes_project 9 104629791 104645477 + Nphp3 protein_coding retained_intron MGP_CASTEiJ_T0094153.1 MGP_CASTEiJ_G0034197.1 mouse_genomes_project 9 104629800 104681739 + MGP_CASTEiJ_P0094153 Nphp3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094154.1 MGP_CASTEiJ_G0034197.1 mouse_genomes_project 9 104667861 104670415 + Nphp3 protein_coding retained_intron MGP_CASTEiJ_T0094155.1 MGP_CASTEiJ_G0034197.1 mouse_genomes_project 9 104671840 104674505 + MGP_CASTEiJ_P0094155 Nphp3 protein_coding protein_coding MGP_CASTEiJ_T0100107.1 MGP_CASTEiJ_G0037020.1 mouse_genomes_project 9 15868497 15868599 + Gm24546 snRNA snRNA MGP_CASTEiJ_T0091565.1 MGP_CASTEiJ_G0033451.1 mouse_genomes_project 9 18623961 18640822 - MGP_CASTEiJ_P0091565 Kri1 protein_coding protein_coding MGP_CASTEiJ_T0091566.1 MGP_CASTEiJ_G0033451.1 mouse_genomes_project 9 18624072 18626642 - Kri1 protein_coding retained_intron MGP_CASTEiJ_T0091567.1 MGP_CASTEiJ_G0033451.1 mouse_genomes_project 9 18630248 18640838 - Kri1 protein_coding retained_intron MGP_CASTEiJ_T0091568.1 MGP_CASTEiJ_G0033451.1 mouse_genomes_project 9 18632344 18640825 - Kri1 protein_coding retained_intron MGP_CASTEiJ_T0091569.1 MGP_CASTEiJ_G0033451.1 mouse_genomes_project 9 18633307 18640838 - Kri1 protein_coding retained_intron MGP_CASTEiJ_T0091570.1 MGP_CASTEiJ_G0033451.1 mouse_genomes_project 9 18640393 18640825 - Kri1 protein_coding retained_intron MGP_CASTEiJ_T0100156.1 MGP_CASTEiJ_G0037069.1 mouse_genomes_project 9 94443714 94443870 + Gm24200 snRNA snRNA MGP_CASTEiJ_T0095064.1 MGP_CASTEiJ_G0034337.1 mouse_genomes_project 9 111460289 111522501 - MGP_CASTEiJ_P0095064 Klhl18 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095066.1 MGP_CASTEiJ_G0034337.1 mouse_genomes_project 9 111469473 111522481 - MGP_CASTEiJ_P0095066 Klhl18 protein_coding protein_coding MGP_CASTEiJ_T0095067.1 MGP_CASTEiJ_G0034337.1 mouse_genomes_project 9 111469475 111522377 - MGP_CASTEiJ_P0095067 Klhl18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095068.1 MGP_CASTEiJ_G0034337.1 mouse_genomes_project 9 111469475 111522476 - MGP_CASTEiJ_P0095068 Klhl18 protein_coding protein_coding MGP_CASTEiJ_T0095069.1 MGP_CASTEiJ_G0034337.1 mouse_genomes_project 9 111469475 111505818 - MGP_CASTEiJ_P0095069 Klhl18 protein_coding protein_coding MGP_CASTEiJ_T0095070.1 MGP_CASTEiJ_G0034337.1 mouse_genomes_project 9 111474268 111476131 - Klhl18 protein_coding retained_intron MGP_CASTEiJ_T0095071.1 MGP_CASTEiJ_G0034337.1 mouse_genomes_project 9 111479750 111496933 - MGP_CASTEiJ_P0095071 Klhl18 protein_coding protein_coding MGP_CASTEiJ_T0095072.1 MGP_CASTEiJ_G0034337.1 mouse_genomes_project 9 111480967 111488199 - Klhl18 protein_coding retained_intron MGP_CASTEiJ_T0093386.1 MGP_CASTEiJ_G0034030.1 mouse_genomes_project 9 73280366 73281419 + MGP_CASTEiJ_P0093386 Khdc3 protein_coding protein_coding MGP_CASTEiJ_T0093387.1 MGP_CASTEiJ_G0034030.1 mouse_genomes_project 9 73280929 73283010 + MGP_CASTEiJ_P0093387 Khdc3 protein_coding protein_coding MGP_CASTEiJ_T0093388.1 MGP_CASTEiJ_G0034030.1 mouse_genomes_project 9 73280929 73283010 + MGP_CASTEiJ_P0093388 Khdc3 protein_coding protein_coding MGP_CASTEiJ_T0093390.1 MGP_CASTEiJ_G0034030.1 mouse_genomes_project 9 73281041 73282766 + MGP_CASTEiJ_P0093390 Khdc3 protein_coding protein_coding MGP_CASTEiJ_T0095432.1 MGP_CASTEiJ_G0034429.1 mouse_genomes_project 9 122849786 122997932 - Ulk4 protein_coding processed_transcript MGP_CASTEiJ_T0095433.1 MGP_CASTEiJ_G0034429.1 mouse_genomes_project 9 122853988 122928612 - Ulk4 protein_coding retained_intron MGP_CASTEiJ_T0095434.1 MGP_CASTEiJ_G0034429.1 mouse_genomes_project 9 122853988 123153479 - MGP_CASTEiJ_P0095434 Ulk4 protein_coding protein_coding MGP_CASTEiJ_T0095435.1 MGP_CASTEiJ_G0034429.1 mouse_genomes_project 9 122855937 123153452 - MGP_CASTEiJ_P0095435 Ulk4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095436.1 MGP_CASTEiJ_G0034429.1 mouse_genomes_project 9 122961266 123153463 - MGP_CASTEiJ_P0095436 Ulk4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095437.1 MGP_CASTEiJ_G0034429.1 mouse_genomes_project 9 122961270 123153454 - MGP_CASTEiJ_P0095437 Ulk4 protein_coding protein_coding MGP_CASTEiJ_T0095438.1 MGP_CASTEiJ_G0034429.1 mouse_genomes_project 9 122991741 123153479 - Ulk4 protein_coding retained_intron MGP_CASTEiJ_T0095439.1 MGP_CASTEiJ_G0034429.1 mouse_genomes_project 9 123051083 123135738 - MGP_CASTEiJ_P0095439 Ulk4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095440.1 MGP_CASTEiJ_G0034429.1 mouse_genomes_project 9 123054572 123084120 - Ulk4 protein_coding processed_transcript MGP_CASTEiJ_T0092917.1 MGP_CASTEiJ_G0033923.1 mouse_genomes_project 9 61784875 61796747 - MGP_CASTEiJ_P0092917 Spesp1 protein_coding protein_coding MGP_CASTEiJ_T0005397.1 MGP_CASTEiJ_G0004562.1 mouse_genomes_project 9 108891490 108895478 - 4921523L03Rik antisense antisense MGP_CASTEiJ_T0091217.1 MGP_CASTEiJ_G0033321.1 mouse_genomes_project 9 1376893 1762801 - MGP_CASTEiJ_P0091217 Gria4 protein_coding protein_coding MGP_CASTEiJ_T0091218.1 MGP_CASTEiJ_G0033321.1 mouse_genomes_project 9 1376893 1762801 - MGP_CASTEiJ_P0091218 Gria4 protein_coding protein_coding MGP_CASTEiJ_T0091219.1 MGP_CASTEiJ_G0033321.1 mouse_genomes_project 9 1438029 1762801 - MGP_CASTEiJ_P0091219 Gria4 protein_coding protein_coding MGP_CASTEiJ_T0091992.1 MGP_CASTEiJ_G0033607.1 mouse_genomes_project 9 36460652 36461585 + MGP_CASTEiJ_P0091992 Olfr907 protein_coding protein_coding MGP_CASTEiJ_T0101377.1 MGP_CASTEiJ_G0038290.1 mouse_genomes_project 9 45164361 45164491 + Gm22659 snoRNA snoRNA MGP_CASTEiJ_T0005381.1 MGP_CASTEiJ_G0004551.1 mouse_genomes_project 9 107263048 107263788 - Gm28959 antisense antisense MGP_CASTEiJ_T0009015.1 MGP_CASTEiJ_G0007261.1 mouse_genomes_project 9 57255404 57264784 + Gm17322 lincRNA lincRNA MGP_CASTEiJ_T0094276.1 MGP_CASTEiJ_G0034218.1 mouse_genomes_project 9 106985762 106999467 + MGP_CASTEiJ_P0094276 Twf2 protein_coding protein_coding MGP_CASTEiJ_T0094277.1 MGP_CASTEiJ_G0034218.1 mouse_genomes_project 9 106985791 106996303 + MGP_CASTEiJ_P0094277 Twf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094278.1 MGP_CASTEiJ_G0034218.1 mouse_genomes_project 9 106985799 106996872 + MGP_CASTEiJ_P0094278 Twf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094279.1 MGP_CASTEiJ_G0034218.1 mouse_genomes_project 9 106989456 106999465 + MGP_CASTEiJ_P0094279 Twf2 protein_coding protein_coding MGP_CASTEiJ_T0094280.1 MGP_CASTEiJ_G0034218.1 mouse_genomes_project 9 106998276 106999079 + Twf2 protein_coding retained_intron MGP_CASTEiJ_T0092010.1 MGP_CASTEiJ_G0033619.1 mouse_genomes_project 9 36838061 36889161 + MGP_CASTEiJ_P0092010 Olfr926 protein_coding protein_coding MGP_CASTEiJ_T0002368.1 MGP_CASTEiJ_G0002285.1 mouse_genomes_project 9 104024545 104026748 + TEC TEC MGP_CASTEiJ_T0100117.1 MGP_CASTEiJ_G0037030.1 mouse_genomes_project 9 39591256 39591362 - Gm25401 snRNA snRNA MGP_CASTEiJ_T0092414.1 MGP_CASTEiJ_G0033775.1 mouse_genomes_project 9 48029025 48039180 + MGP_CASTEiJ_P0092414 Gm4894 protein_coding protein_coding MGP_CASTEiJ_T0015412.1 MGP_CASTEiJ_G0013575.1 mouse_genomes_project 9 9911593 9912578 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0094684.1 MGP_CASTEiJ_G0034281.1 mouse_genomes_project 9 109001832 109105520 - MGP_CASTEiJ_P0094684 Bsn protein_coding protein_coding MGP_CASTEiJ_T0094685.1 MGP_CASTEiJ_G0034281.1 mouse_genomes_project 9 109001833 109016088 - MGP_CASTEiJ_P0094685 Bsn protein_coding protein_coding MGP_CASTEiJ_T0091995.1 MGP_CASTEiJ_G0033610.1 mouse_genomes_project 9 36567551 36568502 + MGP_CASTEiJ_P0091995 Olfr914 protein_coding protein_coding MGP_CASTEiJ_T0095555.1 MGP_CASTEiJ_G0034471.1 mouse_genomes_project 9 125642217 125682559 - MGP_CASTEiJ_P0095555 Lztfl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095556.1 MGP_CASTEiJ_G0034471.1 mouse_genomes_project 9 125647896 125659610 - MGP_CASTEiJ_P0095556 Lztfl1 protein_coding protein_coding MGP_CASTEiJ_T0095557.1 MGP_CASTEiJ_G0034471.1 mouse_genomes_project 9 125653186 125655197 - Lztfl1 protein_coding retained_intron MGP_CASTEiJ_T0095558.1 MGP_CASTEiJ_G0034471.1 mouse_genomes_project 9 125654936 125682509 - Lztfl1 protein_coding processed_transcript MGP_CASTEiJ_T0095559.1 MGP_CASTEiJ_G0034471.1 mouse_genomes_project 9 125659463 125682503 - Lztfl1 protein_coding processed_transcript MGP_CASTEiJ_T0095560.1 MGP_CASTEiJ_G0034471.1 mouse_genomes_project 9 125659467 125682505 - Lztfl1 protein_coding processed_transcript MGP_CASTEiJ_T0095561.1 MGP_CASTEiJ_G0034471.1 mouse_genomes_project 9 125679663 125682538 - Lztfl1 protein_coding retained_intron MGP_CASTEiJ_T0092057.1 MGP_CASTEiJ_G0033660.1 mouse_genomes_project 9 38166785 38167830 - MGP_CASTEiJ_P0092057 Olfr979 protein_coding protein_coding MGP_CASTEiJ_T0015433.1 MGP_CASTEiJ_G0013596.1 mouse_genomes_project 9 38659858 38660397 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093711.1 MGP_CASTEiJ_G0034104.1 mouse_genomes_project 9 88412568 88445748 - MGP_CASTEiJ_P0093711 Tbx18 protein_coding protein_coding MGP_CASTEiJ_T0093712.1 MGP_CASTEiJ_G0034104.1 mouse_genomes_project 9 88438873 88444988 - Tbx18 protein_coding processed_transcript MGP_CASTEiJ_T0002384.1 MGP_CASTEiJ_G0002301.1 mouse_genomes_project 9 109406141 109407155 + TEC TEC MGP_CASTEiJ_T0095571.1 MGP_CASTEiJ_G0034474.1 mouse_genomes_project 9 125825742 125835140 - MGP_CASTEiJ_P0095571 Xcr1 protein_coding protein_coding MGP_CASTEiJ_T0093892.1 MGP_CASTEiJ_G0034140.1 mouse_genomes_project 9 96741481 96747966 - MGP_CASTEiJ_P0093892 protein_coding protein_coding MGP_CASTEiJ_T0093893.1 MGP_CASTEiJ_G0034140.1 mouse_genomes_project 9 96743452 96747944 - protein_coding processed_transcript MGP_CASTEiJ_T0093581.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83422180 83542411 - MGP_CASTEiJ_P0093581 Phip protein_coding unknown_likely_coding MGP_CASTEiJ_T0093582.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83425335 83542611 - MGP_CASTEiJ_P0093582 Phip protein_coding protein_coding MGP_CASTEiJ_T0093583.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83429584 83459228 - Phip protein_coding retained_intron MGP_CASTEiJ_T0093584.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83450584 83454125 - Phip protein_coding retained_intron MGP_CASTEiJ_T0093585.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83455973 83542503 - Phip protein_coding retained_intron MGP_CASTEiJ_T0093586.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83457641 83458948 - Phip protein_coding retained_intron MGP_CASTEiJ_T0093587.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83460016 83463967 - Phip protein_coding retained_intron MGP_CASTEiJ_T0093588.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83463523 83497175 - MGP_CASTEiJ_P0093588 Phip protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093589.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83467207 83472761 - Phip protein_coding retained_intron MGP_CASTEiJ_T0093590.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83476879 83542521 - Phip protein_coding retained_intron MGP_CASTEiJ_T0093591.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83477489 83491676 - MGP_CASTEiJ_P0093591 Phip protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093592.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83480734 83482521 - Phip protein_coding retained_intron MGP_CASTEiJ_T0093593.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83490403 83492709 - Phip protein_coding retained_intron MGP_CASTEiJ_T0093594.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83491714 83541362 - MGP_CASTEiJ_P0093594 Phip protein_coding protein_coding MGP_CASTEiJ_T0093595.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83494523 83497632 - Phip protein_coding retained_intron MGP_CASTEiJ_T0093596.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83511429 83542511 - Phip protein_coding retained_intron MGP_CASTEiJ_T0093597.1 MGP_CASTEiJ_G0034083.1 mouse_genomes_project 9 83522733 83542514 - Phip protein_coding retained_intron MGP_CASTEiJ_T0095373.1 MGP_CASTEiJ_G0034407.1 mouse_genomes_project 9 121142098 121175987 + MGP_CASTEiJ_P0095373 Acvr2b protein_coding protein_coding MGP_CASTEiJ_T0095374.1 MGP_CASTEiJ_G0034407.1 mouse_genomes_project 9 121142155 121175987 + MGP_CASTEiJ_P0095374 Acvr2b protein_coding protein_coding MGP_CASTEiJ_T0095375.1 MGP_CASTEiJ_G0034407.1 mouse_genomes_project 9 121142200 121175947 + MGP_CASTEiJ_P0095375 Acvr2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0092722.1 MGP_CASTEiJ_G0033875.1 mouse_genomes_project 9 56812492 56819220 + MGP_CASTEiJ_P0092722 Ulk3 protein_coding protein_coding MGP_CASTEiJ_T0091862.1 MGP_CASTEiJ_G0033545.1 mouse_genomes_project 9 33567027 33570113 - MGP_CASTEiJ_P0091862 Pate3 protein_coding protein_coding MGP_CASTEiJ_T0101414.1 MGP_CASTEiJ_G0038327.1 mouse_genomes_project 9 111148485 111148623 - Gm23377 snoRNA snoRNA MGP_CASTEiJ_T0005389.1 MGP_CASTEiJ_G0004557.1 mouse_genomes_project 9 108408497 108411677 - Gm34106 antisense antisense MGP_CASTEiJ_T0010728.1 MGP_CASTEiJ_G0008916.1 mouse_genomes_project 9 10617603 10617704 + Gm22643 miRNA miRNA MGP_CASTEiJ_T0005350.1 MGP_CASTEiJ_G0004531.1 mouse_genomes_project 9 96066177 96068304 - 1700065D16Rik antisense antisense MGP_CASTEiJ_T0005351.1 MGP_CASTEiJ_G0004531.1 mouse_genomes_project 9 96066179 96069109 - 1700065D16Rik antisense antisense MGP_CASTEiJ_T0005352.1 MGP_CASTEiJ_G0004531.1 mouse_genomes_project 9 96066179 96068658 - 1700065D16Rik antisense antisense MGP_CASTEiJ_T0005353.1 MGP_CASTEiJ_G0004531.1 mouse_genomes_project 9 96066180 96068658 - 1700065D16Rik antisense antisense MGP_CASTEiJ_T0005354.1 MGP_CASTEiJ_G0004531.1 mouse_genomes_project 9 96066311 96069107 - 1700065D16Rik antisense antisense MGP_CASTEiJ_T0010743.1 MGP_CASTEiJ_G0008931.1 mouse_genomes_project 9 39796288 39796368 + Mir100 miRNA miRNA MGP_CASTEiJ_T0010798.1 MGP_CASTEiJ_G0008986.1 mouse_genomes_project 9 124588378 124588477 + Mir138-1 miRNA miRNA MGP_CASTEiJ_T0100105.1 MGP_CASTEiJ_G0037018.1 mouse_genomes_project 9 10348017 10348124 + Gm26189 snRNA snRNA MGP_CASTEiJ_T0092884.1 MGP_CASTEiJ_G0033915.1 mouse_genomes_project 9 60133823 60152474 + MGP_CASTEiJ_P0092884 Larp6 protein_coding protein_coding MGP_CASTEiJ_T0010751.1 MGP_CASTEiJ_G0008939.1 mouse_genomes_project 9 47215204 47215315 - Gm23653 miRNA miRNA MGP_CASTEiJ_T0092358.1 MGP_CASTEiJ_G0033755.1 mouse_genomes_project 9 44810477 44813257 + MGP_CASTEiJ_P0092358 Apoa4 protein_coding protein_coding MGP_CASTEiJ_T0092359.1 MGP_CASTEiJ_G0033755.1 mouse_genomes_project 9 44810904 44813258 + MGP_CASTEiJ_P0092359 Apoa4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091993.1 MGP_CASTEiJ_G0033608.1 mouse_genomes_project 9 36481706 36482646 + MGP_CASTEiJ_P0091993 Olfr911-ps1 protein_coding protein_coding MGP_CASTEiJ_T0002392.1 MGP_CASTEiJ_G0002309.1 mouse_genomes_project 9 111366735 111369396 - TEC TEC MGP_CASTEiJ_T0100152.1 MGP_CASTEiJ_G0037065.1 mouse_genomes_project 9 89238346 89238462 - Gm22985 snRNA snRNA MGP_CASTEiJ_T0008999.1 MGP_CASTEiJ_G0007248.1 mouse_genomes_project 9 41853556 41854454 + Gm28215 lincRNA lincRNA MGP_CASTEiJ_T0093984.1 MGP_CASTEiJ_G0034163.1 mouse_genomes_project 9 99697091 99750123 - MGP_CASTEiJ_P0093984 Esyt3 protein_coding protein_coding MGP_CASTEiJ_T0093985.1 MGP_CASTEiJ_G0034163.1 mouse_genomes_project 9 99704668 99709262 - Esyt3 protein_coding retained_intron MGP_CASTEiJ_T0093986.1 MGP_CASTEiJ_G0034163.1 mouse_genomes_project 9 99704712 99711568 - MGP_CASTEiJ_P0093986 Esyt3 protein_coding protein_coding MGP_CASTEiJ_T0093987.1 MGP_CASTEiJ_G0034163.1 mouse_genomes_project 9 99720799 99726893 - Esyt3 protein_coding retained_intron MGP_CASTEiJ_T0093988.1 MGP_CASTEiJ_G0034163.1 mouse_genomes_project 9 99747202 99750162 - Esyt3 protein_coding retained_intron MGP_CASTEiJ_T0092305.1 MGP_CASTEiJ_G0033743.1 mouse_genomes_project 9 43929864 43937045 + MGP_CASTEiJ_P0092305 Fxyd2 protein_coding protein_coding MGP_CASTEiJ_T0092306.1 MGP_CASTEiJ_G0033743.1 mouse_genomes_project 9 43932937 43937077 + MGP_CASTEiJ_P0092306 Fxyd2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099030.1 MGP_CASTEiJ_G0035948.1 mouse_genomes_project 9 109319867 109320997 + Gm37963 sense_intronic sense_intronic MGP_CASTEiJ_T0099029.1 MGP_CASTEiJ_G0035947.1 mouse_genomes_project 9 102668136 102670610 - Gm29388 sense_intronic sense_intronic MGP_CASTEiJ_T0095413.1 MGP_CASTEiJ_G0034424.1 mouse_genomes_project 9 122332420 122335129 + MGP_CASTEiJ_P0095413 Eif1b protein_coding protein_coding MGP_CASTEiJ_T0101417.1 MGP_CASTEiJ_G0038330.1 mouse_genomes_project 9 115042532 115042649 - Gm25059 snoRNA snoRNA MGP_CASTEiJ_T0094873.1 MGP_CASTEiJ_G0034309.1 mouse_genomes_project 9 109821221 109822222 + Slc26a6 protein_coding processed_transcript MGP_CASTEiJ_T0094874.1 MGP_CASTEiJ_G0034309.1 mouse_genomes_project 9 109821286 109830089 + MGP_CASTEiJ_P0094874 Slc26a6 protein_coding protein_coding MGP_CASTEiJ_T0094875.1 MGP_CASTEiJ_G0034309.1 mouse_genomes_project 9 109821800 109835953 + MGP_CASTEiJ_P0094875 Slc26a6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0094876.1 MGP_CASTEiJ_G0034309.1 mouse_genomes_project 9 109821974 109828758 + MGP_CASTEiJ_P0094876 Slc26a6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094877.1 MGP_CASTEiJ_G0034309.1 mouse_genomes_project 9 109821974 109835458 + MGP_CASTEiJ_P0094877 Slc26a6 protein_coding protein_coding MGP_CASTEiJ_T0094878.1 MGP_CASTEiJ_G0034309.1 mouse_genomes_project 9 109821980 109830089 + MGP_CASTEiJ_P0094878 Slc26a6 protein_coding protein_coding MGP_CASTEiJ_T0094879.1 MGP_CASTEiJ_G0034309.1 mouse_genomes_project 9 109822011 109830089 + Slc26a6 protein_coding retained_intron MGP_CASTEiJ_T0094880.1 MGP_CASTEiJ_G0034309.1 mouse_genomes_project 9 109822031 109830089 + Slc26a6 protein_coding retained_intron MGP_CASTEiJ_T0094881.1 MGP_CASTEiJ_G0034309.1 mouse_genomes_project 9 109822072 109830089 + MGP_CASTEiJ_P0094881 Slc26a6 protein_coding protein_coding MGP_CASTEiJ_T0094882.1 MGP_CASTEiJ_G0034309.1 mouse_genomes_project 9 109823594 109830089 + MGP_CASTEiJ_P0094882 Slc26a6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094883.1 MGP_CASTEiJ_G0034309.1 mouse_genomes_project 9 109835309 109835949 + MGP_CASTEiJ_P0094883 Slc26a6 protein_coding protein_coding MGP_CASTEiJ_T0005277.1 MGP_CASTEiJ_G0004481.1 mouse_genomes_project 9 19626044 19662572 - antisense antisense MGP_CASTEiJ_T0005278.1 MGP_CASTEiJ_G0004481.1 mouse_genomes_project 9 19652941 19662593 - antisense antisense MGP_CASTEiJ_T0005279.1 MGP_CASTEiJ_G0004481.1 mouse_genomes_project 9 19653502 19654717 - antisense antisense MGP_CASTEiJ_T0092167.1 MGP_CASTEiJ_G0033698.1 mouse_genomes_project 9 42575823 42580288 + MGP_CASTEiJ_P0092167 Mcam protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092168.1 MGP_CASTEiJ_G0033698.1 mouse_genomes_project 9 42576044 42583167 + MGP_CASTEiJ_P0092168 Mcam protein_coding protein_coding MGP_CASTEiJ_T0092169.1 MGP_CASTEiJ_G0033698.1 mouse_genomes_project 9 42577898 42578628 + MGP_CASTEiJ_P0092169 Mcam protein_coding protein_coding MGP_CASTEiJ_T0092170.1 MGP_CASTEiJ_G0033698.1 mouse_genomes_project 9 42578215 42581036 + Mcam protein_coding retained_intron MGP_CASTEiJ_T0009077.1 MGP_CASTEiJ_G0007308.1 mouse_genomes_project 9 97375296 97383611 + Gm26767 lincRNA lincRNA MGP_CASTEiJ_T0091468.1 MGP_CASTEiJ_G0033417.1 mouse_genomes_project 9 17394161 17397224 + MGP_CASTEiJ_P0091468 Olfr868 protein_coding protein_coding MGP_CASTEiJ_T0091643.1 MGP_CASTEiJ_G0033479.1 mouse_genomes_project 9 19469903 19485373 - MGP_CASTEiJ_P0091643 Zfp653 protein_coding protein_coding MGP_CASTEiJ_T0091644.1 MGP_CASTEiJ_G0033479.1 mouse_genomes_project 9 19469903 19485373 - MGP_CASTEiJ_P0091644 Zfp653 protein_coding protein_coding MGP_CASTEiJ_T0011416.1 MGP_CASTEiJ_G0009604.1 mouse_genomes_project 9 111135059 111135187 - Gm27855 misc_RNA misc_RNA MGP_CASTEiJ_T0095393.1 MGP_CASTEiJ_G0034417.1 mouse_genomes_project 9 121758413 121773677 - MGP_CASTEiJ_P0095393 Csrnp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093492.1 MGP_CASTEiJ_G0034057.1 mouse_genomes_project 9 78022781 78031293 + MGP_CASTEiJ_P0093492 Klhl31 protein_coding unknown_likely_coding MGP_CASTEiJ_T0010795.1 MGP_CASTEiJ_G0008983.1 mouse_genomes_project 9 120707102 120707192 + Mir26a-1 miRNA miRNA MGP_CASTEiJ_T0092417.1 MGP_CASTEiJ_G0033778.1 mouse_genomes_project 9 48208834 48260587 - MGP_CASTEiJ_P0092417 Ttc12 protein_coding protein_coding MGP_CASTEiJ_T0092418.1 MGP_CASTEiJ_G0033778.1 mouse_genomes_project 9 48230440 48260577 - Ttc12 protein_coding retained_intron MGP_CASTEiJ_T0002358.1 MGP_CASTEiJ_G0002275.1 mouse_genomes_project 9 101641069 101642953 + TEC TEC MGP_CASTEiJ_T0091972.1 MGP_CASTEiJ_G0033587.1 mouse_genomes_project 9 36016069 36016999 + MGP_CASTEiJ_P0091972 Olfr885 protein_coding protein_coding MGP_CASTEiJ_T0092713.1 MGP_CASTEiJ_G0033870.1 mouse_genomes_project 9 56722236 56723582 + MGP_CASTEiJ_P0092713 Rpp25 protein_coding protein_coding MGP_CASTEiJ_T0009076.1 MGP_CASTEiJ_G0007307.1 mouse_genomes_project 9 97353361 97374421 - Gm19325 lincRNA lincRNA MGP_CASTEiJ_T0002328.1 MGP_CASTEiJ_G0002245.1 mouse_genomes_project 9 87508175 87510557 - TEC TEC MGP_CASTEiJ_T0095485.1 MGP_CASTEiJ_G0034442.1 mouse_genomes_project 9 123817374 123831082 + MGP_CASTEiJ_P0095485 Ackr2 protein_coding protein_coding MGP_CASTEiJ_T0095354.1 MGP_CASTEiJ_G0034401.1 mouse_genomes_project 9 120851114 120853612 + MGP_CASTEiJ_P0095354 Gm10608 protein_coding protein_coding MGP_CASTEiJ_T0098419.1 MGP_CASTEiJ_G0035350.1 mouse_genomes_project 9 68760988 68761440 + pseudogene pseudogene MGP_CASTEiJ_T0002290.1 MGP_CASTEiJ_G0002208.1 mouse_genomes_project 9 71918936 71920671 - TEC TEC MGP_CASTEiJ_T0092977.1 MGP_CASTEiJ_G0033939.1 mouse_genomes_project 9 63772120 63811111 - MGP_CASTEiJ_P0092977 Zwilch protein_coding protein_coding MGP_CASTEiJ_T0092978.1 MGP_CASTEiJ_G0033939.1 mouse_genomes_project 9 63772193 63810866 - MGP_CASTEiJ_P0092978 Zwilch protein_coding protein_coding MGP_CASTEiJ_T0092979.1 MGP_CASTEiJ_G0033939.1 mouse_genomes_project 9 63772688 63780180 - Zwilch protein_coding retained_intron MGP_CASTEiJ_T0092980.1 MGP_CASTEiJ_G0033939.1 mouse_genomes_project 9 63775222 63810902 - MGP_CASTEiJ_P0092980 Zwilch protein_coding protein_coding MGP_CASTEiJ_T0092981.1 MGP_CASTEiJ_G0033939.1 mouse_genomes_project 9 63775299 63786028 - MGP_CASTEiJ_P0092981 Zwilch protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092982.1 MGP_CASTEiJ_G0033939.1 mouse_genomes_project 9 63775301 63783323 - MGP_CASTEiJ_P0092982 Zwilch protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092983.1 MGP_CASTEiJ_G0033939.1 mouse_genomes_project 9 63780152 63791370 - Zwilch protein_coding retained_intron MGP_CASTEiJ_T0092984.1 MGP_CASTEiJ_G0033939.1 mouse_genomes_project 9 63783339 63791619 - Zwilch protein_coding retained_intron MGP_CASTEiJ_T0092985.1 MGP_CASTEiJ_G0033939.1 mouse_genomes_project 9 63791055 63810921 - MGP_CASTEiJ_P0092985 Zwilch protein_coding protein_coding MGP_CASTEiJ_T0092986.1 MGP_CASTEiJ_G0033939.1 mouse_genomes_project 9 63796846 63810914 - MGP_CASTEiJ_P0092986 Zwilch protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092987.1 MGP_CASTEiJ_G0033939.1 mouse_genomes_project 9 63797262 63810896 - MGP_CASTEiJ_P0092987 Zwilch protein_coding protein_coding MGP_CASTEiJ_T0092988.1 MGP_CASTEiJ_G0033939.1 mouse_genomes_project 9 63798566 63810898 - MGP_CASTEiJ_P0092988 Zwilch protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092989.1 MGP_CASTEiJ_G0033939.1 mouse_genomes_project 9 63804037 63810911 - Zwilch protein_coding retained_intron MGP_CASTEiJ_T0092822.1 MGP_CASTEiJ_G0033901.1 mouse_genomes_project 9 58611244 58642161 + MGP_CASTEiJ_P0092822 Adpgk protein_coding protein_coding MGP_CASTEiJ_T0092823.1 MGP_CASTEiJ_G0033901.1 mouse_genomes_project 9 58611306 58639312 + MGP_CASTEiJ_P0092823 Adpgk protein_coding unknown_likely_coding MGP_CASTEiJ_T0017841.1 MGP_CASTEiJ_G0015079.1 mouse_genomes_project 9 124291007 124312431 - A730085K08Rik processed_transcript processed_transcript MGP_CASTEiJ_T0091438.1 MGP_CASTEiJ_G0033388.1 mouse_genomes_project 9 15665023 15685448 - MGP_CASTEiJ_P0091438 protein_coding protein_coding MGP_CASTEiJ_T0091439.1 MGP_CASTEiJ_G0033388.1 mouse_genomes_project 9 15665086 15822301 - MGP_CASTEiJ_P0091439 protein_coding unknown_likely_coding MGP_CASTEiJ_T0101412.1 MGP_CASTEiJ_G0038325.1 mouse_genomes_project 9 109363667 109363776 - Gm25456 snoRNA snoRNA MGP_CASTEiJ_T0008989.1 MGP_CASTEiJ_G0007240.1 mouse_genomes_project 9 32470827 32471606 - Gm26662 lincRNA lincRNA MGP_CASTEiJ_T0094485.1 MGP_CASTEiJ_G0034257.1 mouse_genomes_project 9 108450316 108455753 + MGP_CASTEiJ_P0094485 Ifrd2 protein_coding protein_coding MGP_CASTEiJ_T0094486.1 MGP_CASTEiJ_G0034257.1 mouse_genomes_project 9 108450400 108455753 + Ifrd2 protein_coding retained_intron MGP_CASTEiJ_T0094487.1 MGP_CASTEiJ_G0034257.1 mouse_genomes_project 9 108450431 108454374 + MGP_CASTEiJ_P0094487 Ifrd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094488.1 MGP_CASTEiJ_G0034257.1 mouse_genomes_project 9 108453115 108453987 + Ifrd2 protein_coding retained_intron MGP_CASTEiJ_T0094489.1 MGP_CASTEiJ_G0034257.1 mouse_genomes_project 9 108453786 108455423 + MGP_CASTEiJ_P0094489 Ifrd2 protein_coding protein_coding MGP_CASTEiJ_T0094490.1 MGP_CASTEiJ_G0034257.1 mouse_genomes_project 9 108454799 108455469 + MGP_CASTEiJ_P0094490 Ifrd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094491.1 MGP_CASTEiJ_G0034257.1 mouse_genomes_project 9 108455341 108456100 + Ifrd2 protein_coding processed_transcript MGP_CASTEiJ_T0092395.1 MGP_CASTEiJ_G0033767.1 mouse_genomes_project 9 47201578 47202198 + MGP_CASTEiJ_P0092395 Gm5617 protein_coding protein_coding MGP_CASTEiJ_T0091981.1 MGP_CASTEiJ_G0033596.1 mouse_genomes_project 9 36229067 36230018 + MGP_CASTEiJ_P0091981 Olfr895 protein_coding protein_coding MGP_CASTEiJ_T0005284.1 MGP_CASTEiJ_G0004486.1 mouse_genomes_project 9 30544794 30546312 - Gm27240 antisense antisense MGP_CASTEiJ_T0091571.1 MGP_CASTEiJ_G0033452.1 mouse_genomes_project 9 18641331 18644119 - MGP_CASTEiJ_P0091571 Cdkn2d protein_coding protein_coding MGP_CASTEiJ_T0091292.1 MGP_CASTEiJ_G0033345.1 mouse_genomes_project 9 5279874 5301816 + MGP_CASTEiJ_P0091292 1700128F08Rik protein_coding protein_coding MGP_CASTEiJ_T0091881.1 MGP_CASTEiJ_G0033558.1 mouse_genomes_project 9 34579820 34597492 - MGP_CASTEiJ_P0091881 Chek1 protein_coding protein_coding MGP_CASTEiJ_T0091882.1 MGP_CASTEiJ_G0033558.1 mouse_genomes_project 9 34579820 34597776 - MGP_CASTEiJ_P0091882 Chek1 protein_coding protein_coding MGP_CASTEiJ_T0091883.1 MGP_CASTEiJ_G0033558.1 mouse_genomes_project 9 34580764 34597703 - MGP_CASTEiJ_P0091883 Chek1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091884.1 MGP_CASTEiJ_G0033558.1 mouse_genomes_project 9 34581481 34596986 - MGP_CASTEiJ_P0091884 Chek1 protein_coding protein_coding MGP_CASTEiJ_T0091885.1 MGP_CASTEiJ_G0033558.1 mouse_genomes_project 9 34581481 34596986 - MGP_CASTEiJ_P0091885 Chek1 protein_coding protein_coding MGP_CASTEiJ_T0091886.1 MGP_CASTEiJ_G0033558.1 mouse_genomes_project 9 34585068 34594009 - Chek1 protein_coding retained_intron MGP_CASTEiJ_T0091887.1 MGP_CASTEiJ_G0033558.1 mouse_genomes_project 9 34593912 34598182 - Chek1 protein_coding processed_transcript MGP_CASTEiJ_T0091888.1 MGP_CASTEiJ_G0033558.1 mouse_genomes_project 9 34594874 34597688 - Chek1 protein_coding retained_intron MGP_CASTEiJ_T0091889.1 MGP_CASTEiJ_G0033558.1 mouse_genomes_project 9 34595133 34597569 - MGP_CASTEiJ_P0091889 Chek1 protein_coding protein_coding MGP_CASTEiJ_T0091309.1 MGP_CASTEiJ_G0033351.1 mouse_genomes_project 9 10312552 10357281 + MGP_CASTEiJ_P0091309 Ccdc82 protein_coding protein_coding MGP_CASTEiJ_T0091310.1 MGP_CASTEiJ_G0033351.1 mouse_genomes_project 9 10312565 10322096 + MGP_CASTEiJ_P0091310 Ccdc82 protein_coding protein_coding MGP_CASTEiJ_T0091729.1 MGP_CASTEiJ_G0033511.1 mouse_genomes_project 9 24667877 24725395 - MGP_CASTEiJ_P0091729 Jam3 protein_coding protein_coding MGP_CASTEiJ_T0091730.1 MGP_CASTEiJ_G0033511.1 mouse_genomes_project 9 24671160 24725392 - MGP_CASTEiJ_P0091730 Jam3 protein_coding protein_coding MGP_CASTEiJ_T0005410.1 MGP_CASTEiJ_G0004575.1 mouse_genomes_project 9 117485907 117496713 - Gm16142 antisense antisense MGP_CASTEiJ_T0092941.1 MGP_CASTEiJ_G0033928.1 mouse_genomes_project 9 62399651 62412710 + MGP_CASTEiJ_P0092941 Cln6 protein_coding protein_coding MGP_CASTEiJ_T0092942.1 MGP_CASTEiJ_G0033928.1 mouse_genomes_project 9 62399658 62406375 + MGP_CASTEiJ_P0092942 Cln6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092943.1 MGP_CASTEiJ_G0033928.1 mouse_genomes_project 9 62406371 62411415 + MGP_CASTEiJ_P0092943 Cln6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092944.1 MGP_CASTEiJ_G0033928.1 mouse_genomes_project 9 62407390 62411865 + MGP_CASTEiJ_P0092944 Cln6 protein_coding protein_coding MGP_CASTEiJ_T0092115.1 MGP_CASTEiJ_G0033681.1 mouse_genomes_project 9 40577896 40588113 - MGP_CASTEiJ_P0092115 Sc5d protein_coding protein_coding MGP_CASTEiJ_T0092116.1 MGP_CASTEiJ_G0033681.1 mouse_genomes_project 9 40578460 40588013 - MGP_CASTEiJ_P0092116 Sc5d protein_coding protein_coding MGP_CASTEiJ_T0005387.1 MGP_CASTEiJ_G0004555.1 mouse_genomes_project 9 108278725 108285445 - Gm17141 antisense antisense MGP_CASTEiJ_T0092405.1 MGP_CASTEiJ_G0033771.1 mouse_genomes_project 9 47685555 47716246 - MGP_CASTEiJ_P0092405 Htr3b protein_coding protein_coding MGP_CASTEiJ_T0091256.1 MGP_CASTEiJ_G0033333.1 mouse_genomes_project 9 4484058 4494762 + MGP_CASTEiJ_P0091256 Mmp3 protein_coding protein_coding MGP_CASTEiJ_T0091538.1 MGP_CASTEiJ_G0033435.1 mouse_genomes_project 9 18219004 18223723 - MGP_CASTEiJ_P0091538 Eif3g protein_coding protein_coding MGP_CASTEiJ_T0093494.1 MGP_CASTEiJ_G0034059.1 mouse_genomes_project 9 78293081 78365870 + MGP_CASTEiJ_P0093494 Elovl5 protein_coding protein_coding MGP_CASTEiJ_T0093495.1 MGP_CASTEiJ_G0034059.1 mouse_genomes_project 9 78293151 78341365 + Elovl5 protein_coding retained_intron MGP_CASTEiJ_T0093496.1 MGP_CASTEiJ_G0034059.1 mouse_genomes_project 9 78300260 78361220 + MGP_CASTEiJ_P0093496 Elovl5 protein_coding protein_coding MGP_CASTEiJ_T0093497.1 MGP_CASTEiJ_G0034059.1 mouse_genomes_project 9 78320993 78344533 + MGP_CASTEiJ_P0093497 Elovl5 protein_coding protein_coding MGP_CASTEiJ_T0100135.1 MGP_CASTEiJ_G0037048.1 mouse_genomes_project 9 66849622 66849720 - Gm24225 snRNA snRNA MGP_CASTEiJ_T0094742.1 MGP_CASTEiJ_G0034293.1 mouse_genomes_project 9 109397224 109402685 + MGP_CASTEiJ_P0094742 Ccdc71 protein_coding protein_coding MGP_CASTEiJ_T0094743.1 MGP_CASTEiJ_G0034293.1 mouse_genomes_project 9 109397232 109399987 + MGP_CASTEiJ_P0094743 Ccdc71 protein_coding protein_coding MGP_CASTEiJ_T0094744.1 MGP_CASTEiJ_G0034293.1 mouse_genomes_project 9 109398125 109402553 + MGP_CASTEiJ_P0094744 Ccdc71 protein_coding protein_coding MGP_CASTEiJ_T0091447.1 MGP_CASTEiJ_G0033396.1 mouse_genomes_project 9 16299839 16300794 + MGP_CASTEiJ_P0091447 protein_coding protein_coding MGP_CASTEiJ_T0095417.1 MGP_CASTEiJ_G0034427.1 mouse_genomes_project 9 122430191 122430931 + MGP_CASTEiJ_P0095417 5830454E08Rik protein_coding protein_coding MGP_CASTEiJ_T0009045.1 MGP_CASTEiJ_G0007285.1 mouse_genomes_project 9 79667461 79667900 + Gm28620 lincRNA lincRNA MGP_CASTEiJ_T0010760.1 MGP_CASTEiJ_G0008948.1 mouse_genomes_project 9 61754353 61754459 - Gm25603 miRNA miRNA MGP_CASTEiJ_T0092937.1 MGP_CASTEiJ_G0033926.1 mouse_genomes_project 9 62214817 62336966 + MGP_CASTEiJ_P0092937 Itga11 protein_coding protein_coding MGP_CASTEiJ_T0092938.1 MGP_CASTEiJ_G0033926.1 mouse_genomes_project 9 62214851 62326975 + Itga11 protein_coding retained_intron MGP_CASTEiJ_T0092939.1 MGP_CASTEiJ_G0033926.1 mouse_genomes_project 9 62214908 62344815 + MGP_CASTEiJ_P0092939 Itga11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091233.1 MGP_CASTEiJ_G0033325.1 mouse_genomes_project 9 3191677 3406978 + MGP_CASTEiJ_P0091233 Pdgfd protein_coding protein_coding MGP_CASTEiJ_T0091234.1 MGP_CASTEiJ_G0033325.1 mouse_genomes_project 9 3191726 3408297 + MGP_CASTEiJ_P0091234 Pdgfd protein_coding protein_coding MGP_CASTEiJ_T0093738.1 MGP_CASTEiJ_G0034109.1 mouse_genomes_project 9 89257088 89283659 + MGP_CASTEiJ_P0093738 Zfp949 protein_coding protein_coding MGP_CASTEiJ_T0093739.1 MGP_CASTEiJ_G0034109.1 mouse_genomes_project 9 89257112 89279973 + MGP_CASTEiJ_P0093739 Zfp949 protein_coding protein_coding MGP_CASTEiJ_T0093740.1 MGP_CASTEiJ_G0034109.1 mouse_genomes_project 9 89257153 89280870 + Zfp949 protein_coding retained_intron MGP_CASTEiJ_T0093741.1 MGP_CASTEiJ_G0034109.1 mouse_genomes_project 9 89257168 89266369 + MGP_CASTEiJ_P0093741 Zfp949 protein_coding protein_coding MGP_CASTEiJ_T0093742.1 MGP_CASTEiJ_G0034109.1 mouse_genomes_project 9 89257251 89283659 + MGP_CASTEiJ_P0093742 Zfp949 protein_coding protein_coding MGP_CASTEiJ_T0092434.1 MGP_CASTEiJ_G0033787.1 mouse_genomes_project 9 49435257 49436677 + MGP_CASTEiJ_P0092434 Timm8b protein_coding protein_coding MGP_CASTEiJ_T0094724.1 MGP_CASTEiJ_G0034290.1 mouse_genomes_project 9 109334479 109362054 - MGP_CASTEiJ_P0094724 Ccdc36 protein_coding protein_coding MGP_CASTEiJ_T0091649.1 MGP_CASTEiJ_G0033481.1 mouse_genomes_project 9 19520812 19534490 + MGP_CASTEiJ_P0091649 Cnn1 protein_coding protein_coding MGP_CASTEiJ_T0010725.1 MGP_CASTEiJ_G0008913.1 mouse_genomes_project 9 5306278 5306374 + Mir1899 miRNA miRNA MGP_CASTEiJ_T0092286.1 MGP_CASTEiJ_G0033734.1 mouse_genomes_project 9 43595912 43624756 + MGP_CASTEiJ_P0092286 Amica1 protein_coding protein_coding MGP_CASTEiJ_T0093970.1 MGP_CASTEiJ_G0034160.1 mouse_genomes_project 9 99410915 99521626 - MGP_CASTEiJ_P0093970 Pik3cb protein_coding protein_coding MGP_CASTEiJ_T0093971.1 MGP_CASTEiJ_G0034160.1 mouse_genomes_project 9 99412662 99521464 - MGP_CASTEiJ_P0093971 Pik3cb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093972.1 MGP_CASTEiJ_G0034160.1 mouse_genomes_project 9 99479847 99522160 - MGP_CASTEiJ_P0093972 Pik3cb protein_coding protein_coding MGP_CASTEiJ_T0092214.1 MGP_CASTEiJ_G0033714.1 mouse_genomes_project 9 42868302 42876394 - MGP_CASTEiJ_P0092214 Ccdc84 protein_coding protein_coding MGP_CASTEiJ_T0017832.1 MGP_CASTEiJ_G0015075.1 mouse_genomes_project 9 109790522 109791682 - Gm35025 processed_transcript lincRNA MGP_CASTEiJ_T0017833.1 MGP_CASTEiJ_G0015075.1 mouse_genomes_project 9 109790654 109791403 - Gm35025 processed_transcript lincRNA MGP_CASTEiJ_T0017834.1 MGP_CASTEiJ_G0015075.1 mouse_genomes_project 9 109790751 109791445 - Gm35025 processed_transcript TEC MGP_CASTEiJ_T0094221.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106135414 106206007 - MGP_CASTEiJ_P0094221 Atp2c1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094222.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106135414 106269298 - MGP_CASTEiJ_P0094222 Atp2c1 protein_coding protein_coding MGP_CASTEiJ_T0094223.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106135421 106242488 - MGP_CASTEiJ_P0094223 Atp2c1 protein_coding protein_coding MGP_CASTEiJ_T0094224.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106154632 106243167 - MGP_CASTEiJ_P0094224 Atp2c1 protein_coding protein_coding MGP_CASTEiJ_T0094225.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106155022 106243206 - MGP_CASTEiJ_P0094225 Atp2c1 protein_coding protein_coding MGP_CASTEiJ_T0094226.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106155023 106269408 - MGP_CASTEiJ_P0094226 Atp2c1 protein_coding protein_coding MGP_CASTEiJ_T0094227.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106156584 106182106 - Atp2c1 protein_coding processed_transcript MGP_CASTEiJ_T0094228.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106158386 106162274 - Atp2c1 protein_coding retained_intron MGP_CASTEiJ_T0094229.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106164083 106178254 - Atp2c1 protein_coding retained_intron MGP_CASTEiJ_T0094230.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106168025 106243150 - MGP_CASTEiJ_P0094230 Atp2c1 protein_coding protein_coding MGP_CASTEiJ_T0094231.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106180698 106190170 - Atp2c1 protein_coding retained_intron MGP_CASTEiJ_T0094232.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106192872 106242530 - Atp2c1 protein_coding processed_transcript MGP_CASTEiJ_T0094233.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106198618 106218364 - MGP_CASTEiJ_P0094233 Atp2c1 protein_coding protein_coding MGP_CASTEiJ_T0094234.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106199586 106243120 - MGP_CASTEiJ_P0094234 Atp2c1 protein_coding protein_coding MGP_CASTEiJ_T0094235.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106200251 106243568 - Atp2c1 protein_coding retained_intron MGP_CASTEiJ_T0094236.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106200307 106242681 - MGP_CASTEiJ_P0094236 Atp2c1 protein_coding protein_coding MGP_CASTEiJ_T0094237.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106204640 106275485 - Atp2c1 protein_coding processed_transcript MGP_CASTEiJ_T0094238.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106204640 106243556 - MGP_CASTEiJ_P0094238 Atp2c1 protein_coding protein_coding MGP_CASTEiJ_T0094239.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106205993 106243178 - MGP_CASTEiJ_P0094239 Atp2c1 protein_coding protein_coding MGP_CASTEiJ_T0094240.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106210980 106242735 - MGP_CASTEiJ_P0094240 Atp2c1 protein_coding protein_coding MGP_CASTEiJ_T0094241.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106215442 106243178 - Atp2c1 protein_coding retained_intron MGP_CASTEiJ_T0094242.1 MGP_CASTEiJ_G0034210.1 mouse_genomes_project 9 106268153 106269564 - Atp2c1 protein_coding retained_intron MGP_CASTEiJ_T0091717.1 MGP_CASTEiJ_G0033506.1 mouse_genomes_project 9 24453610 24487909 - MGP_CASTEiJ_P0091717 Gm1110 protein_coding protein_coding MGP_CASTEiJ_T0094860.1 MGP_CASTEiJ_G0034307.1 mouse_genomes_project 9 109774947 109785436 + MGP_CASTEiJ_P0094860 Nckipsd protein_coding protein_coding MGP_CASTEiJ_T0094861.1 MGP_CASTEiJ_G0034307.1 mouse_genomes_project 9 109774952 109777727 + MGP_CASTEiJ_P0094861 Nckipsd protein_coding protein_coding MGP_CASTEiJ_T0094862.1 MGP_CASTEiJ_G0034307.1 mouse_genomes_project 9 109775000 109778199 + MGP_CASTEiJ_P0094862 Nckipsd protein_coding protein_coding MGP_CASTEiJ_T0094863.1 MGP_CASTEiJ_G0034307.1 mouse_genomes_project 9 109778519 109780676 + MGP_CASTEiJ_P0094863 Nckipsd protein_coding protein_coding MGP_CASTEiJ_T0094864.1 MGP_CASTEiJ_G0034307.1 mouse_genomes_project 9 109780022 109780921 + Nckipsd protein_coding retained_intron MGP_CASTEiJ_T0094865.1 MGP_CASTEiJ_G0034307.1 mouse_genomes_project 9 109781430 109782698 + Nckipsd protein_coding retained_intron MGP_CASTEiJ_T0091508.1 MGP_CASTEiJ_G0033427.1 mouse_genomes_project 9 17946889 17950813 + Ubl5 protein_coding retained_intron MGP_CASTEiJ_T0091509.1 MGP_CASTEiJ_G0033427.1 mouse_genomes_project 9 17947330 17951002 + MGP_CASTEiJ_P0091509 Ubl5 protein_coding protein_coding MGP_CASTEiJ_T0091510.1 MGP_CASTEiJ_G0033427.1 mouse_genomes_project 9 17948083 17950815 + MGP_CASTEiJ_P0091510 Ubl5 protein_coding protein_coding MGP_CASTEiJ_T0091511.1 MGP_CASTEiJ_G0033427.1 mouse_genomes_project 9 17948352 17949667 + MGP_CASTEiJ_P0091511 Ubl5 protein_coding protein_coding MGP_CASTEiJ_T0091512.1 MGP_CASTEiJ_G0033427.1 mouse_genomes_project 9 17948837 17950813 + MGP_CASTEiJ_P0091512 Ubl5 protein_coding protein_coding MGP_CASTEiJ_T0091513.1 MGP_CASTEiJ_G0033427.1 mouse_genomes_project 9 17948850 17949936 + Ubl5 protein_coding retained_intron MGP_CASTEiJ_T0091514.1 MGP_CASTEiJ_G0033427.1 mouse_genomes_project 9 17948850 17951178 + MGP_CASTEiJ_P0091514 Ubl5 protein_coding protein_coding MGP_CASTEiJ_T0091515.1 MGP_CASTEiJ_G0033427.1 mouse_genomes_project 9 17948851 17950813 + MGP_CASTEiJ_P0091515 Ubl5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091516.1 MGP_CASTEiJ_G0033427.1 mouse_genomes_project 9 17948884 17950807 + MGP_CASTEiJ_P0091516 Ubl5 protein_coding protein_coding MGP_CASTEiJ_T0091517.1 MGP_CASTEiJ_G0033427.1 mouse_genomes_project 9 17949057 17950813 + MGP_CASTEiJ_P0091517 Ubl5 protein_coding protein_coding MGP_CASTEiJ_T0091518.1 MGP_CASTEiJ_G0033427.1 mouse_genomes_project 9 17949234 17950814 + MGP_CASTEiJ_P0091518 Ubl5 protein_coding protein_coding MGP_CASTEiJ_T0095573.1 MGP_CASTEiJ_G0034476.1 mouse_genomes_project 9 125907070 125908530 - MGP_CASTEiJ_P0095573 Ccr1l1 protein_coding protein_coding MGP_CASTEiJ_T0002313.1 MGP_CASTEiJ_G0002231.1 mouse_genomes_project 9 74037972 74040969 - TEC TEC MGP_CASTEiJ_T0092011.1 MGP_CASTEiJ_G0033620.1 mouse_genomes_project 9 36844688 36845619 + MGP_CASTEiJ_P0092011 Olfr26 protein_coding protein_coding MGP_CASTEiJ_T0092597.1 MGP_CASTEiJ_G0033836.1 mouse_genomes_project 9 53880299 53929778 + MGP_CASTEiJ_P0092597 Ireb2 protein_coding protein_coding MGP_CASTEiJ_T0015416.1 MGP_CASTEiJ_G0013579.1 mouse_genomes_project 9 14659538 14659986 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092280.1 MGP_CASTEiJ_G0033732.1 mouse_genomes_project 9 43558006 43570804 + MGP_CASTEiJ_P0092280 Mpzl2 protein_coding protein_coding MGP_CASTEiJ_T0093807.1 MGP_CASTEiJ_G0034123.1 mouse_genomes_project 9 92403039 92426556 + MGP_CASTEiJ_P0093807 Plscr2 protein_coding protein_coding MGP_CASTEiJ_T0093808.1 MGP_CASTEiJ_G0034123.1 mouse_genomes_project 9 92403075 92409497 + MGP_CASTEiJ_P0093808 Plscr2 protein_coding protein_coding MGP_CASTEiJ_T0093809.1 MGP_CASTEiJ_G0034123.1 mouse_genomes_project 9 92419313 92420245 + Plscr2 protein_coding retained_intron MGP_CASTEiJ_T0005293.1 MGP_CASTEiJ_G0004494.1 mouse_genomes_project 9 43840791 43844563 - 1700003G13Rik antisense antisense MGP_CASTEiJ_T0005294.1 MGP_CASTEiJ_G0004494.1 mouse_genomes_project 9 43840792 43844584 - 1700003G13Rik antisense antisense MGP_CASTEiJ_T0091454.1 MGP_CASTEiJ_G0033403.1 mouse_genomes_project 9 16743982 16744900 - MGP_CASTEiJ_P0091454 Olfr853 protein_coding protein_coding MGP_CASTEiJ_T0092408.1 MGP_CASTEiJ_G0033773.1 mouse_genomes_project 9 47812271 47838497 + MGP_CASTEiJ_P0092408 Zw10 protein_coding protein_coding MGP_CASTEiJ_T0092709.1 MGP_CASTEiJ_G0033866.1 mouse_genomes_project 9 56422101 56437255 + MGP_CASTEiJ_P0092709 Trcg1 protein_coding protein_coding MGP_CASTEiJ_T0092279.1 MGP_CASTEiJ_G0033731.1 mouse_genomes_project 9 43506158 43518606 - MGP_CASTEiJ_P0092279 Cd3e protein_coding protein_coding MGP_CASTEiJ_T0092158.1 MGP_CASTEiJ_G0033697.1 mouse_genomes_project 9 42545579 42547522 + MGP_CASTEiJ_P0092158 C1qtnf5 protein_coding protein_coding MGP_CASTEiJ_T0092159.1 MGP_CASTEiJ_G0033697.1 mouse_genomes_project 9 42545588 42547520 + MGP_CASTEiJ_P0092159 C1qtnf5 protein_coding protein_coding MGP_CASTEiJ_T0092160.1 MGP_CASTEiJ_G0033697.1 mouse_genomes_project 9 42545608 42547519 + MGP_CASTEiJ_P0092160 C1qtnf5 protein_coding protein_coding MGP_CASTEiJ_T0092161.1 MGP_CASTEiJ_G0033697.1 mouse_genomes_project 9 42545643 42546828 + MGP_CASTEiJ_P0092161 C1qtnf5 protein_coding protein_coding MGP_CASTEiJ_T0092162.1 MGP_CASTEiJ_G0033697.1 mouse_genomes_project 9 42545648 42547519 + MGP_CASTEiJ_P0092162 C1qtnf5 protein_coding protein_coding MGP_CASTEiJ_T0092163.1 MGP_CASTEiJ_G0033697.1 mouse_genomes_project 9 42545655 42546242 + MGP_CASTEiJ_P0092163 C1qtnf5 protein_coding protein_coding MGP_CASTEiJ_T0092164.1 MGP_CASTEiJ_G0033697.1 mouse_genomes_project 9 42545709 42547107 + MGP_CASTEiJ_P0092164 C1qtnf5 protein_coding protein_coding MGP_CASTEiJ_T0092165.1 MGP_CASTEiJ_G0033697.1 mouse_genomes_project 9 42545849 42546879 + MGP_CASTEiJ_P0092165 C1qtnf5 protein_coding protein_coding MGP_CASTEiJ_T0093111.1 MGP_CASTEiJ_G0033977.1 mouse_genomes_project 9 65920774 65933662 + MGP_CASTEiJ_P0093111 Fam96a protein_coding protein_coding MGP_CASTEiJ_T0093145.1 MGP_CASTEiJ_G0033987.1 mouse_genomes_project 9 66813613 66817984 + MGP_CASTEiJ_P0093145 Rps27l protein_coding protein_coding MGP_CASTEiJ_T0093146.1 MGP_CASTEiJ_G0033987.1 mouse_genomes_project 9 66813618 66817986 + MGP_CASTEiJ_P0093146 Rps27l protein_coding protein_coding MGP_CASTEiJ_T0093147.1 MGP_CASTEiJ_G0033987.1 mouse_genomes_project 9 66813693 66817940 + MGP_CASTEiJ_P0093147 Rps27l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093148.1 MGP_CASTEiJ_G0033987.1 mouse_genomes_project 9 66813882 66817988 + Rps27l protein_coding processed_transcript MGP_CASTEiJ_T0093149.1 MGP_CASTEiJ_G0033987.1 mouse_genomes_project 9 66815171 66817940 + MGP_CASTEiJ_P0093149 Rps27l protein_coding protein_coding MGP_CASTEiJ_T0093150.1 MGP_CASTEiJ_G0033987.1 mouse_genomes_project 9 66817034 66817983 + Rps27l protein_coding retained_intron MGP_CASTEiJ_T0095355.1 MGP_CASTEiJ_G0034402.1 mouse_genomes_project 9 120862376 120885628 - MGP_CASTEiJ_P0095355 Slc22a14 protein_coding protein_coding MGP_CASTEiJ_T0095356.1 MGP_CASTEiJ_G0034402.1 mouse_genomes_project 9 120862377 121096011 - MGP_CASTEiJ_P0095356 Slc22a14 protein_coding protein_coding MGP_CASTEiJ_T0095357.1 MGP_CASTEiJ_G0034402.1 mouse_genomes_project 9 120862589 120866578 - MGP_CASTEiJ_P0095357 Slc22a14 protein_coding protein_coding MGP_CASTEiJ_T0095358.1 MGP_CASTEiJ_G0034402.1 mouse_genomes_project 9 120873946 120885583 - MGP_CASTEiJ_P0095358 Slc22a14 protein_coding protein_coding MGP_CASTEiJ_T0095510.1 MGP_CASTEiJ_G0034452.1 mouse_genomes_project 9 124743176 124750342 - MGP_CASTEiJ_P0095510 Gm35549 protein_coding protein_coding MGP_CASTEiJ_T0095511.1 MGP_CASTEiJ_G0034452.1 mouse_genomes_project 9 124743176 124750342 - MGP_CASTEiJ_P0095511 Gm35549 protein_coding protein_coding MGP_CASTEiJ_T0095512.1 MGP_CASTEiJ_G0034452.1 mouse_genomes_project 9 124743176 124750342 - MGP_CASTEiJ_P0095512 Gm35549 protein_coding protein_coding MGP_CASTEiJ_T0010770.1 MGP_CASTEiJ_G0008958.1 mouse_genomes_project 9 73175014 73175136 + Gm27353 miRNA miRNA MGP_CASTEiJ_T0015551.1 MGP_CASTEiJ_G0013714.1 mouse_genomes_project 9 125731018 125731292 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093141.1 MGP_CASTEiJ_G0033983.1 mouse_genomes_project 9 66631077 66651156 - MGP_CASTEiJ_P0093141 Aph1b protein_coding protein_coding MGP_CASTEiJ_T0009107.1 MGP_CASTEiJ_G0007333.1 mouse_genomes_project 9 113383181 113383848 + 2310075C17Rik lincRNA lincRNA MGP_CASTEiJ_T0092368.1 MGP_CASTEiJ_G0033758.1 mouse_genomes_project 9 44857139 44869203 + Bud13 protein_coding retained_intron MGP_CASTEiJ_T0092369.1 MGP_CASTEiJ_G0033758.1 mouse_genomes_project 9 44857139 44873871 + MGP_CASTEiJ_P0092369 Bud13 protein_coding protein_coding MGP_CASTEiJ_T0092370.1 MGP_CASTEiJ_G0033758.1 mouse_genomes_project 9 44863705 44873871 + MGP_CASTEiJ_P0092370 Bud13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092371.1 MGP_CASTEiJ_G0033758.1 mouse_genomes_project 9 44863727 44865812 + Bud13 protein_coding retained_intron MGP_CASTEiJ_T0095129.1 MGP_CASTEiJ_G0034350.1 mouse_genomes_project 9 111917751 111927987 + MGP_CASTEiJ_P0095129 Prss46 protein_coding protein_coding MGP_CASTEiJ_T0095130.1 MGP_CASTEiJ_G0034350.1 mouse_genomes_project 9 111921601 111927981 + MGP_CASTEiJ_P0095130 Prss46 protein_coding protein_coding MGP_CASTEiJ_T0095065.1 MGP_CASTEiJ_G0034338.1 mouse_genomes_project 9 111463574 111466832 + MGP_CASTEiJ_P0095065 Ngp protein_coding protein_coding MGP_CASTEiJ_T0093300.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72375404 72447045 + MGP_CASTEiJ_P0093300 Zfp280d protein_coding protein_coding MGP_CASTEiJ_T0093301.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72375404 72472558 + MGP_CASTEiJ_P0093301 Zfp280d protein_coding protein_coding MGP_CASTEiJ_T0093302.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72375431 72471194 + MGP_CASTEiJ_P0093302 Zfp280d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093303.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72375432 72472280 + MGP_CASTEiJ_P0093303 Zfp280d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093304.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72375440 72388099 + Zfp280d protein_coding processed_transcript MGP_CASTEiJ_T0093305.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72375504 72386790 + Zfp280d protein_coding processed_transcript MGP_CASTEiJ_T0093306.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72375506 72398451 + Zfp280d protein_coding retained_intron MGP_CASTEiJ_T0093307.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72375529 72472542 + MGP_CASTEiJ_P0093307 Zfp280d protein_coding protein_coding MGP_CASTEiJ_T0093308.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72391195 72472552 + MGP_CASTEiJ_P0093308 Zfp280d protein_coding protein_coding MGP_CASTEiJ_T0093309.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72394428 72472297 + MGP_CASTEiJ_P0093309 Zfp280d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093310.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72398003 72425812 + MGP_CASTEiJ_P0093310 Zfp280d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093311.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72406461 72408567 + Zfp280d protein_coding retained_intron MGP_CASTEiJ_T0093312.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72411455 72426868 + MGP_CASTEiJ_P0093312 Zfp280d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093313.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72411977 72422513 + Zfp280d protein_coding retained_intron MGP_CASTEiJ_T0093314.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72425818 72434486 + Zfp280d protein_coding retained_intron MGP_CASTEiJ_T0093315.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72433423 72435514 + Zfp280d protein_coding retained_intron MGP_CASTEiJ_T0093316.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72436258 72439623 + Zfp280d protein_coding retained_intron MGP_CASTEiJ_T0093317.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72436304 72470703 + MGP_CASTEiJ_P0093317 Zfp280d protein_coding protein_coding MGP_CASTEiJ_T0093318.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72444675 72471451 + MGP_CASTEiJ_P0093318 Zfp280d protein_coding protein_coding MGP_CASTEiJ_T0093319.1 MGP_CASTEiJ_G0034017.1 mouse_genomes_project 9 72469121 72472408 + MGP_CASTEiJ_P0093319 Zfp280d protein_coding protein_coding MGP_CASTEiJ_T0009124.1 MGP_CASTEiJ_G0007345.1 mouse_genomes_project 9 124793905 124815185 - A530083I20Rik lincRNA lincRNA MGP_CASTEiJ_T0009125.1 MGP_CASTEiJ_G0007345.1 mouse_genomes_project 9 124804162 124815171 - A530083I20Rik lincRNA lincRNA MGP_CASTEiJ_T0005286.1 MGP_CASTEiJ_G0004488.1 mouse_genomes_project 9 34642798 34657173 + Gm26787 antisense antisense MGP_CASTEiJ_T0101349.1 MGP_CASTEiJ_G0038262.1 mouse_genomes_project 9 294053 294183 + Gm24918 snoRNA snoRNA MGP_CASTEiJ_T0100165.1 MGP_CASTEiJ_G0037078.1 mouse_genomes_project 9 112171574 112171637 + Gm26409 snRNA snRNA MGP_CASTEiJ_T0015420.1 MGP_CASTEiJ_G0013583.1 mouse_genomes_project 9 20160699 20161167 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010786.1 MGP_CASTEiJ_G0008974.1 mouse_genomes_project 9 109811107 109811193 + Gm23156 miRNA miRNA MGP_CASTEiJ_T0092643.1 MGP_CASTEiJ_G0033849.1 mouse_genomes_project 9 55025783 55037662 - MGP_CASTEiJ_P0092643 4930563M21Rik protein_coding protein_coding MGP_CASTEiJ_T0005404.1 MGP_CASTEiJ_G0004569.1 mouse_genomes_project 9 111733653 111739516 - Gm42762 antisense antisense MGP_CASTEiJ_T0015419.1 MGP_CASTEiJ_G0013582.1 mouse_genomes_project 9 20154831 20155609 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095039.1 MGP_CASTEiJ_G0034333.1 mouse_genomes_project 9 111275251 111292084 + MGP_CASTEiJ_P0095039 Cspg5 protein_coding protein_coding MGP_CASTEiJ_T0095040.1 MGP_CASTEiJ_G0034333.1 mouse_genomes_project 9 111275251 111292085 + MGP_CASTEiJ_P0095040 Cspg5 protein_coding protein_coding MGP_CASTEiJ_T0095041.1 MGP_CASTEiJ_G0034333.1 mouse_genomes_project 9 111276938 111279060 + Cspg5 protein_coding retained_intron MGP_CASTEiJ_T0095042.1 MGP_CASTEiJ_G0034333.1 mouse_genomes_project 9 111276986 111288174 + MGP_CASTEiJ_P0095042 Cspg5 protein_coding protein_coding MGP_CASTEiJ_T0095043.1 MGP_CASTEiJ_G0034333.1 mouse_genomes_project 9 111277519 111292084 + MGP_CASTEiJ_P0095043 Cspg5 protein_coding protein_coding MGP_CASTEiJ_T0093466.1 MGP_CASTEiJ_G0034055.1 mouse_genomes_project 9 77440846 77473816 - protein_coding retained_intron MGP_CASTEiJ_T0093467.1 MGP_CASTEiJ_G0034055.1 mouse_genomes_project 9 77440846 77696249 - MGP_CASTEiJ_P0093467 protein_coding protein_coding MGP_CASTEiJ_T0093468.1 MGP_CASTEiJ_G0034055.1 mouse_genomes_project 9 77440846 77696242 - MGP_CASTEiJ_P0093468 protein_coding protein_coding MGP_CASTEiJ_T0093469.1 MGP_CASTEiJ_G0034055.1 mouse_genomes_project 9 77440851 77696172 - MGP_CASTEiJ_P0093469 protein_coding protein_coding MGP_CASTEiJ_T0093470.1 MGP_CASTEiJ_G0034055.1 mouse_genomes_project 9 77440851 77696180 - MGP_CASTEiJ_P0093470 protein_coding protein_coding MGP_CASTEiJ_T0093471.1 MGP_CASTEiJ_G0034055.1 mouse_genomes_project 9 77440854 77696295 - MGP_CASTEiJ_P0093471 protein_coding protein_coding MGP_CASTEiJ_T0093472.1 MGP_CASTEiJ_G0034055.1 mouse_genomes_project 9 77440854 77596841 - MGP_CASTEiJ_P0093472 protein_coding protein_coding MGP_CASTEiJ_T0093473.1 MGP_CASTEiJ_G0034055.1 mouse_genomes_project 9 77440877 77473565 - MGP_CASTEiJ_P0093473 protein_coding protein_coding MGP_CASTEiJ_T0093474.1 MGP_CASTEiJ_G0034055.1 mouse_genomes_project 9 77441075 77596887 - MGP_CASTEiJ_P0093474 protein_coding protein_coding MGP_CASTEiJ_T0093475.1 MGP_CASTEiJ_G0034055.1 mouse_genomes_project 9 77441156 77596803 - MGP_CASTEiJ_P0093475 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093476.1 MGP_CASTEiJ_G0034055.1 mouse_genomes_project 9 77497238 77696240 - MGP_CASTEiJ_P0093476 protein_coding protein_coding MGP_CASTEiJ_T0093477.1 MGP_CASTEiJ_G0034055.1 mouse_genomes_project 9 77574368 77696230 - MGP_CASTEiJ_P0093477 protein_coding protein_coding MGP_CASTEiJ_T0093478.1 MGP_CASTEiJ_G0034055.1 mouse_genomes_project 9 77574371 77596850 - MGP_CASTEiJ_P0093478 protein_coding protein_coding MGP_CASTEiJ_T0093479.1 MGP_CASTEiJ_G0034055.1 mouse_genomes_project 9 77574399 77689027 - MGP_CASTEiJ_P0093479 protein_coding protein_coding MGP_CASTEiJ_T0093480.1 MGP_CASTEiJ_G0034055.1 mouse_genomes_project 9 77594234 77597076 - protein_coding retained_intron MGP_CASTEiJ_T0093481.1 MGP_CASTEiJ_G0034055.1 mouse_genomes_project 9 77694815 77700974 - protein_coding processed_transcript MGP_CASTEiJ_T0009106.1 MGP_CASTEiJ_G0007332.1 mouse_genomes_project 9 112677666 112682583 - Gm42523 lincRNA lincRNA MGP_CASTEiJ_T0091962.1 MGP_CASTEiJ_G0033578.1 mouse_genomes_project 9 35695537 35696470 + MGP_CASTEiJ_P0091962 Olfr874 protein_coding protein_coding MGP_CASTEiJ_T0092797.1 MGP_CASTEiJ_G0033896.1 mouse_genomes_project 9 57820411 57852534 - MGP_CASTEiJ_P0092797 Cd276 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092798.1 MGP_CASTEiJ_G0033896.1 mouse_genomes_project 9 57820593 57838546 - MGP_CASTEiJ_P0092798 Cd276 protein_coding protein_coding MGP_CASTEiJ_T0092799.1 MGP_CASTEiJ_G0033896.1 mouse_genomes_project 9 57820595 57852800 - MGP_CASTEiJ_P0092799 Cd276 protein_coding protein_coding MGP_CASTEiJ_T0093963.1 MGP_CASTEiJ_G0034157.1 mouse_genomes_project 9 99319803 99321037 + MGP_CASTEiJ_P0093963 Foxl2 protein_coding protein_coding MGP_CASTEiJ_T0100126.1 MGP_CASTEiJ_G0037039.1 mouse_genomes_project 9 51682452 51682571 + Gm22242 snRNA snRNA MGP_CASTEiJ_T0008978.1 MGP_CASTEiJ_G0007229.1 mouse_genomes_project 9 19106040 19112836 - Gm26511 lincRNA lincRNA MGP_CASTEiJ_T0008980.1 MGP_CASTEiJ_G0007231.1 mouse_genomes_project 9 22711122 22731520 + Gm29642 lincRNA lincRNA MGP_CASTEiJ_T0101355.1 MGP_CASTEiJ_G0038268.1 mouse_genomes_project 9 12412093 12413921 + Gm22620 snoRNA snoRNA MGP_CASTEiJ_T0092415.1 MGP_CASTEiJ_G0033776.1 mouse_genomes_project 9 48101346 48171318 + MGP_CASTEiJ_P0092415 Drd2 protein_coding protein_coding MGP_CASTEiJ_T0002308.1 MGP_CASTEiJ_G0002226.1 mouse_genomes_project 9 73049121 73050393 + TEC TEC MGP_CASTEiJ_T0002285.1 MGP_CASTEiJ_G0002203.1 mouse_genomes_project 9 33277239 33278393 - TEC TEC MGP_CASTEiJ_T0092430.1 MGP_CASTEiJ_G0033784.1 mouse_genomes_project 9 49383792 49388075 - MGP_CASTEiJ_P0092430 Tex12 protein_coding protein_coding MGP_CASTEiJ_T0093617.1 MGP_CASTEiJ_G0034086.1 mouse_genomes_project 9 84126229 84231890 + MGP_CASTEiJ_P0093617 Sh3bgrl2 protein_coding protein_coding MGP_CASTEiJ_T0093618.1 MGP_CASTEiJ_G0034086.1 mouse_genomes_project 9 84126231 84126912 + Sh3bgrl2 protein_coding retained_intron MGP_CASTEiJ_T0093619.1 MGP_CASTEiJ_G0034086.1 mouse_genomes_project 9 84126252 84231389 + MGP_CASTEiJ_P0093619 Sh3bgrl2 protein_coding protein_coding MGP_CASTEiJ_T0093620.1 MGP_CASTEiJ_G0034086.1 mouse_genomes_project 9 84126301 84182075 + MGP_CASTEiJ_P0093620 Sh3bgrl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093621.1 MGP_CASTEiJ_G0034086.1 mouse_genomes_project 9 84126361 84184411 + MGP_CASTEiJ_P0093621 Sh3bgrl2 protein_coding protein_coding MGP_CASTEiJ_T0095365.1 MGP_CASTEiJ_G0034405.1 mouse_genomes_project 9 121067623 121070700 + MGP_CASTEiJ_P0095365 protein_coding protein_coding MGP_CASTEiJ_T0095367.1 MGP_CASTEiJ_G0034405.1 mouse_genomes_project 9 121068994 121077781 + MGP_CASTEiJ_P0095367 protein_coding protein_coding MGP_CASTEiJ_T0095368.1 MGP_CASTEiJ_G0034405.1 mouse_genomes_project 9 121069361 121079261 + protein_coding retained_intron MGP_CASTEiJ_T0095369.1 MGP_CASTEiJ_G0034405.1 mouse_genomes_project 9 121076097 121078753 + protein_coding retained_intron MGP_CASTEiJ_T0095370.1 MGP_CASTEiJ_G0034405.1 mouse_genomes_project 9 121076479 121079131 + MGP_CASTEiJ_P0095370 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095371.1 MGP_CASTEiJ_G0034405.1 mouse_genomes_project 9 121078502 121078974 + protein_coding retained_intron MGP_CASTEiJ_T0009078.1 MGP_CASTEiJ_G0007309.1 mouse_genomes_project 9 98534023 98534645 - 2610303G11Rik lincRNA lincRNA MGP_CASTEiJ_T0101371.1 MGP_CASTEiJ_G0038284.1 mouse_genomes_project 9 39002356 39002442 + Snord14c snoRNA snoRNA MGP_CASTEiJ_T0017802.1 MGP_CASTEiJ_G0015064.1 mouse_genomes_project 9 83725328 83726773 + Gm29054 processed_transcript TEC MGP_CASTEiJ_T0017803.1 MGP_CASTEiJ_G0015064.1 mouse_genomes_project 9 83725359 83726690 + Gm29054 processed_transcript antisense MGP_CASTEiJ_T0009035.1 MGP_CASTEiJ_G0007276.1 mouse_genomes_project 9 72924427 72926578 - Gm27204 lincRNA lincRNA MGP_CASTEiJ_T0092657.1 MGP_CASTEiJ_G0033853.1 mouse_genomes_project 9 55289500 55334053 - MGP_CASTEiJ_P0092657 Peak1 protein_coding protein_coding MGP_CASTEiJ_T0092658.1 MGP_CASTEiJ_G0033853.1 mouse_genomes_project 9 55293501 55521763 - MGP_CASTEiJ_P0092658 Peak1 protein_coding protein_coding MGP_CASTEiJ_T0092659.1 MGP_CASTEiJ_G0033853.1 mouse_genomes_project 9 55520394 55521746 - Peak1 protein_coding retained_intron MGP_CASTEiJ_T0092131.1 MGP_CASTEiJ_G0033686.1 mouse_genomes_project 9 41462534 41472954 - MGP_CASTEiJ_P0092131 Tmem136 protein_coding protein_coding MGP_CASTEiJ_T0091663.1 MGP_CASTEiJ_G0033490.1 mouse_genomes_project 9 19878181 19912942 + MGP_CASTEiJ_P0091663 9530077C05Rik protein_coding protein_coding MGP_CASTEiJ_T0093964.1 MGP_CASTEiJ_G0034158.1 mouse_genomes_project 9 99356631 99371999 + MGP_CASTEiJ_P0093964 Faim protein_coding protein_coding MGP_CASTEiJ_T0093965.1 MGP_CASTEiJ_G0034158.1 mouse_genomes_project 9 99356647 99371954 + MGP_CASTEiJ_P0093965 Faim protein_coding protein_coding MGP_CASTEiJ_T0093966.1 MGP_CASTEiJ_G0034158.1 mouse_genomes_project 9 99356658 99360904 + Faim protein_coding retained_intron MGP_CASTEiJ_T0093967.1 MGP_CASTEiJ_G0034158.1 mouse_genomes_project 9 99356664 99363509 + Faim protein_coding retained_intron MGP_CASTEiJ_T0093968.1 MGP_CASTEiJ_G0034158.1 mouse_genomes_project 9 99362074 99371938 + MGP_CASTEiJ_P0093968 Faim protein_coding protein_coding MGP_CASTEiJ_T0015505.1 MGP_CASTEiJ_G0013668.1 mouse_genomes_project 9 92811538 92812287 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093765.1 MGP_CASTEiJ_G0034116.1 mouse_genomes_project 9 90175494 90203402 - Morf4l1 protein_coding retained_intron MGP_CASTEiJ_T0093766.1 MGP_CASTEiJ_G0034116.1 mouse_genomes_project 9 90176933 90203506 - MGP_CASTEiJ_P0093766 Morf4l1 protein_coding protein_coding MGP_CASTEiJ_T0093767.1 MGP_CASTEiJ_G0034116.1 mouse_genomes_project 9 90177052 90203051 - Morf4l1 protein_coding processed_transcript MGP_CASTEiJ_T0093768.1 MGP_CASTEiJ_G0034116.1 mouse_genomes_project 9 90178806 90180596 - Morf4l1 protein_coding retained_intron MGP_CASTEiJ_T0093769.1 MGP_CASTEiJ_G0034116.1 mouse_genomes_project 9 90184084 90184989 - Morf4l1 protein_coding retained_intron MGP_CASTEiJ_T0093770.1 MGP_CASTEiJ_G0034116.1 mouse_genomes_project 9 90184507 90203421 - MGP_CASTEiJ_P0093770 Morf4l1 protein_coding protein_coding MGP_CASTEiJ_T0093771.1 MGP_CASTEiJ_G0034116.1 mouse_genomes_project 9 90184985 90203291 - Morf4l1 protein_coding processed_transcript MGP_CASTEiJ_T0093772.1 MGP_CASTEiJ_G0034116.1 mouse_genomes_project 9 90184985 90203460 - MGP_CASTEiJ_P0093772 Morf4l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093773.1 MGP_CASTEiJ_G0034116.1 mouse_genomes_project 9 90189003 90203372 - Morf4l1 protein_coding retained_intron MGP_CASTEiJ_T0093774.1 MGP_CASTEiJ_G0034116.1 mouse_genomes_project 9 90195705 90203345 - Morf4l1 protein_coding retained_intron MGP_CASTEiJ_T0092603.1 MGP_CASTEiJ_G0033839.1 mouse_genomes_project 9 53964456 53973704 + MGP_CASTEiJ_P0092603 Psma4 protein_coding protein_coding MGP_CASTEiJ_T0092604.1 MGP_CASTEiJ_G0033839.1 mouse_genomes_project 9 53964464 53970050 + Psma4 protein_coding retained_intron MGP_CASTEiJ_T0092605.1 MGP_CASTEiJ_G0033839.1 mouse_genomes_project 9 53964471 53968695 + Psma4 protein_coding retained_intron MGP_CASTEiJ_T0092606.1 MGP_CASTEiJ_G0033839.1 mouse_genomes_project 9 53964472 53971698 + MGP_CASTEiJ_P0092606 Psma4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092607.1 MGP_CASTEiJ_G0033839.1 mouse_genomes_project 9 53964481 53966469 + Psma4 protein_coding processed_transcript MGP_CASTEiJ_T0092608.1 MGP_CASTEiJ_G0033839.1 mouse_genomes_project 9 53964481 53970593 + MGP_CASTEiJ_P0092608 Psma4 protein_coding protein_coding MGP_CASTEiJ_T0092609.1 MGP_CASTEiJ_G0033839.1 mouse_genomes_project 9 53964556 53967089 + Psma4 protein_coding retained_intron MGP_CASTEiJ_T0092610.1 MGP_CASTEiJ_G0033839.1 mouse_genomes_project 9 53964770 53969963 + MGP_CASTEiJ_P0092610 Psma4 protein_coding protein_coding MGP_CASTEiJ_T0092100.1 MGP_CASTEiJ_G0033676.1 mouse_genomes_project 9 39083883 39087687 + MGP_CASTEiJ_P0092100 Bsx protein_coding protein_coding MGP_CASTEiJ_T0002396.1 MGP_CASTEiJ_G0002313.1 mouse_genomes_project 9 112147285 112147697 - TEC TEC MGP_CASTEiJ_T0015484.1 MGP_CASTEiJ_G0013647.1 mouse_genomes_project 9 84077700 84078106 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095254.1 MGP_CASTEiJ_G0034372.1 mouse_genomes_project 9 115252156 115313620 - MGP_CASTEiJ_P0095254 Fbxl2 protein_coding protein_coding MGP_CASTEiJ_T0095255.1 MGP_CASTEiJ_G0034372.1 mouse_genomes_project 9 115265214 115313652 - MGP_CASTEiJ_P0095255 Fbxl2 protein_coding protein_coding MGP_CASTEiJ_T0095256.1 MGP_CASTEiJ_G0034372.1 mouse_genomes_project 9 115266539 115313617 - MGP_CASTEiJ_P0095256 Fbxl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095257.1 MGP_CASTEiJ_G0034372.1 mouse_genomes_project 9 115271825 115279756 - Fbxl2 protein_coding retained_intron MGP_CASTEiJ_T0095258.1 MGP_CASTEiJ_G0034372.1 mouse_genomes_project 9 115277635 115313665 - Fbxl2 protein_coding retained_intron MGP_CASTEiJ_T0095259.1 MGP_CASTEiJ_G0034372.1 mouse_genomes_project 9 115291330 115332562 - Fbxl2 protein_coding processed_transcript MGP_CASTEiJ_T0010781.1 MGP_CASTEiJ_G0008969.1 mouse_genomes_project 9 108987031 108987117 + Mir7088 miRNA miRNA MGP_CASTEiJ_T0091865.1 MGP_CASTEiJ_G0033546.1 mouse_genomes_project 9 33605517 33607806 - MGP_CASTEiJ_P0091865 Pate1 protein_coding protein_coding MGP_CASTEiJ_T0091866.1 MGP_CASTEiJ_G0033546.1 mouse_genomes_project 9 33605865 33607825 - Pate1 protein_coding retained_intron MGP_CASTEiJ_T0093505.1 MGP_CASTEiJ_G0034062.1 mouse_genomes_project 9 78497461 78560639 + MGP_CASTEiJ_P0093505 Ick protein_coding protein_coding MGP_CASTEiJ_T0093506.1 MGP_CASTEiJ_G0034062.1 mouse_genomes_project 9 78497504 78501895 + MGP_CASTEiJ_P0093506 Ick protein_coding protein_coding MGP_CASTEiJ_T0093507.1 MGP_CASTEiJ_G0034062.1 mouse_genomes_project 9 78501311 78506908 + Ick protein_coding processed_transcript MGP_CASTEiJ_T0093508.1 MGP_CASTEiJ_G0034062.1 mouse_genomes_project 9 78501706 78522846 + Ick protein_coding retained_intron MGP_CASTEiJ_T0093509.1 MGP_CASTEiJ_G0034062.1 mouse_genomes_project 9 78501749 78514310 + MGP_CASTEiJ_P0093509 Ick protein_coding protein_coding MGP_CASTEiJ_T0093510.1 MGP_CASTEiJ_G0034062.1 mouse_genomes_project 9 78501765 78556993 + MGP_CASTEiJ_P0093510 Ick protein_coding protein_coding MGP_CASTEiJ_T0093511.1 MGP_CASTEiJ_G0034062.1 mouse_genomes_project 9 78501780 78564809 + MGP_CASTEiJ_P0093511 Ick protein_coding protein_coding MGP_CASTEiJ_T0093512.1 MGP_CASTEiJ_G0034062.1 mouse_genomes_project 9 78546961 78563154 + Ick protein_coding retained_intron MGP_CASTEiJ_T0092715.1 MGP_CASTEiJ_G0033872.1 mouse_genomes_project 9 56756036 56759236 + MGP_CASTEiJ_P0092715 Fam219b protein_coding protein_coding MGP_CASTEiJ_T0094271.1 MGP_CASTEiJ_G0034217.1 mouse_genomes_project 9 106977060 106982165 - MGP_CASTEiJ_P0094271 Ppm1m protein_coding protein_coding MGP_CASTEiJ_T0094272.1 MGP_CASTEiJ_G0034217.1 mouse_genomes_project 9 106977060 106981846 - MGP_CASTEiJ_P0094272 Ppm1m protein_coding protein_coding MGP_CASTEiJ_T0094273.1 MGP_CASTEiJ_G0034217.1 mouse_genomes_project 9 106977839 106979790 - MGP_CASTEiJ_P0094273 Ppm1m protein_coding protein_coding MGP_CASTEiJ_T0094274.1 MGP_CASTEiJ_G0034217.1 mouse_genomes_project 9 106980436 106981237 - Ppm1m protein_coding retained_intron MGP_CASTEiJ_T0094275.1 MGP_CASTEiJ_G0034217.1 mouse_genomes_project 9 106980846 106982621 - Ppm1m protein_coding processed_transcript MGP_CASTEiJ_T0095572.1 MGP_CASTEiJ_G0034475.1 mouse_genomes_project 9 125893512 125898852 - MGP_CASTEiJ_P0095572 Ccr1 protein_coding protein_coding MGP_CASTEiJ_T0095059.1 MGP_CASTEiJ_G0034336.1 mouse_genomes_project 9 111426208 111450941 - MGP_CASTEiJ_P0095059 Ptpn23 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095060.1 MGP_CASTEiJ_G0034336.1 mouse_genomes_project 9 111426210 111450951 - MGP_CASTEiJ_P0095060 Ptpn23 protein_coding protein_coding MGP_CASTEiJ_T0095061.1 MGP_CASTEiJ_G0034336.1 mouse_genomes_project 9 111426452 111427375 - MGP_CASTEiJ_P0095061 Ptpn23 protein_coding protein_coding MGP_CASTEiJ_T0095062.1 MGP_CASTEiJ_G0034336.1 mouse_genomes_project 9 111426968 111427777 - Ptpn23 protein_coding retained_intron MGP_CASTEiJ_T0095063.1 MGP_CASTEiJ_G0034336.1 mouse_genomes_project 9 111430354 111431578 - Ptpn23 protein_coding retained_intron MGP_CASTEiJ_T0009011.1 MGP_CASTEiJ_G0007257.1 mouse_genomes_project 9 55722460 55732033 + Gm26868 lincRNA lincRNA MGP_CASTEiJ_T0091821.1 MGP_CASTEiJ_G0033536.1 mouse_genomes_project 9 33105313 33112041 - MGP_CASTEiJ_P0091821 Foxred1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091822.1 MGP_CASTEiJ_G0033536.1 mouse_genomes_project 9 33105315 33112059 - Foxred1 protein_coding retained_intron MGP_CASTEiJ_T0091823.1 MGP_CASTEiJ_G0033536.1 mouse_genomes_project 9 33105315 33112075 - Foxred1 protein_coding retained_intron MGP_CASTEiJ_T0091824.1 MGP_CASTEiJ_G0033536.1 mouse_genomes_project 9 33105315 33112085 - MGP_CASTEiJ_P0091824 Foxred1 protein_coding protein_coding MGP_CASTEiJ_T0091825.1 MGP_CASTEiJ_G0033536.1 mouse_genomes_project 9 33105315 33112106 - MGP_CASTEiJ_P0091825 Foxred1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091826.1 MGP_CASTEiJ_G0033536.1 mouse_genomes_project 9 33105315 33112160 - MGP_CASTEiJ_P0091826 Foxred1 protein_coding protein_coding MGP_CASTEiJ_T0091827.1 MGP_CASTEiJ_G0033536.1 mouse_genomes_project 9 33105969 33107026 - Foxred1 protein_coding retained_intron MGP_CASTEiJ_T0091828.1 MGP_CASTEiJ_G0033536.1 mouse_genomes_project 9 33106288 33107338 - MGP_CASTEiJ_P0091828 Foxred1 protein_coding protein_coding MGP_CASTEiJ_T0091829.1 MGP_CASTEiJ_G0033536.1 mouse_genomes_project 9 33107190 33112051 - Foxred1 protein_coding retained_intron MGP_CASTEiJ_T0091830.1 MGP_CASTEiJ_G0033536.1 mouse_genomes_project 9 33107326 33112101 - MGP_CASTEiJ_P0091830 Foxred1 protein_coding protein_coding MGP_CASTEiJ_T0091831.1 MGP_CASTEiJ_G0033536.1 mouse_genomes_project 9 33108643 33112027 - MGP_CASTEiJ_P0091831 Foxred1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091832.1 MGP_CASTEiJ_G0033536.1 mouse_genomes_project 9 33108653 33112002 - MGP_CASTEiJ_P0091832 Foxred1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095452.1 MGP_CASTEiJ_G0034434.1 mouse_genomes_project 9 123575767 123600707 - MGP_CASTEiJ_P0095452 Sec22c protein_coding protein_coding MGP_CASTEiJ_T0095453.1 MGP_CASTEiJ_G0034434.1 mouse_genomes_project 9 123578643 123601143 - MGP_CASTEiJ_P0095453 Sec22c protein_coding protein_coding MGP_CASTEiJ_T0095454.1 MGP_CASTEiJ_G0034434.1 mouse_genomes_project 9 123580170 123600657 - MGP_CASTEiJ_P0095454 Sec22c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095455.1 MGP_CASTEiJ_G0034434.1 mouse_genomes_project 9 123583820 123586085 - Sec22c protein_coding retained_intron MGP_CASTEiJ_T0095456.1 MGP_CASTEiJ_G0034434.1 mouse_genomes_project 9 123591190 123601168 - MGP_CASTEiJ_P0095456 Sec22c protein_coding protein_coding MGP_CASTEiJ_T0099025.1 MGP_CASTEiJ_G0035943.1 mouse_genomes_project 9 39852138 39852448 + Gm28119 sense_intronic sense_intronic MGP_CASTEiJ_T0092613.1 MGP_CASTEiJ_G0033841.1 mouse_genomes_project 9 54031726 54048767 - MGP_CASTEiJ_P0092613 Chrna3 protein_coding protein_coding MGP_CASTEiJ_T0011412.1 MGP_CASTEiJ_G0009600.1 mouse_genomes_project 9 90112921 90113189 + Gm23759 misc_RNA misc_RNA MGP_CASTEiJ_T0010738.1 MGP_CASTEiJ_G0008926.1 mouse_genomes_project 9 19538834 19538904 - Mir7084 miRNA miRNA MGP_CASTEiJ_T0093517.1 MGP_CASTEiJ_G0034067.1 mouse_genomes_project 9 78746965 78749586 - MGP_CASTEiJ_P0093517 Ooep protein_coding protein_coding MGP_CASTEiJ_T0091546.1 MGP_CASTEiJ_G0033443.1 mouse_genomes_project 9 18406963 18412932 - MGP_CASTEiJ_P0091546 Fdx1l protein_coding protein_coding MGP_CASTEiJ_T0093941.1 MGP_CASTEiJ_G0034148.1 mouse_genomes_project 9 98632626 98747528 + MGP_CASTEiJ_P0093941 Nmnat3 protein_coding protein_coding MGP_CASTEiJ_T0093942.1 MGP_CASTEiJ_G0034148.1 mouse_genomes_project 9 98632646 98712666 + Nmnat3 protein_coding processed_transcript MGP_CASTEiJ_T0093943.1 MGP_CASTEiJ_G0034148.1 mouse_genomes_project 9 98641817 98698905 + Nmnat3 protein_coding retained_intron MGP_CASTEiJ_T0093944.1 MGP_CASTEiJ_G0034148.1 mouse_genomes_project 9 98641817 98768467 + MGP_CASTEiJ_P0093944 Nmnat3 protein_coding protein_coding MGP_CASTEiJ_T0093945.1 MGP_CASTEiJ_G0034148.1 mouse_genomes_project 9 98697203 98759603 + MGP_CASTEiJ_P0093945 Nmnat3 protein_coding protein_coding MGP_CASTEiJ_T0009075.1 MGP_CASTEiJ_G0007306.1 mouse_genomes_project 9 96786339 96793226 - lincRNA lincRNA MGP_CASTEiJ_T0092912.1 MGP_CASTEiJ_G0033922.1 mouse_genomes_project 9 61554475 61567853 - MGP_CASTEiJ_P0092912 Glce protein_coding protein_coding MGP_CASTEiJ_T0092913.1 MGP_CASTEiJ_G0033922.1 mouse_genomes_project 9 61554475 61621709 - MGP_CASTEiJ_P0092913 Glce protein_coding protein_coding MGP_CASTEiJ_T0092914.1 MGP_CASTEiJ_G0033922.1 mouse_genomes_project 9 61557239 61568087 - Glce protein_coding retained_intron MGP_CASTEiJ_T0092915.1 MGP_CASTEiJ_G0033922.1 mouse_genomes_project 9 61567714 61621754 - MGP_CASTEiJ_P0092915 Glce protein_coding protein_coding MGP_CASTEiJ_T0092916.1 MGP_CASTEiJ_G0033922.1 mouse_genomes_project 9 61577585 61621708 - Glce protein_coding processed_transcript MGP_CASTEiJ_T0002314.1 MGP_CASTEiJ_G0002232.1 mouse_genomes_project 9 75909132 75909821 + TEC TEC MGP_CASTEiJ_T0092552.1 MGP_CASTEiJ_G0033819.1 mouse_genomes_project 9 52578044 52637245 - MGP_CASTEiJ_P0092552 Cul5 protein_coding protein_coding MGP_CASTEiJ_T0092553.1 MGP_CASTEiJ_G0033819.1 mouse_genomes_project 9 52578044 52634735 - MGP_CASTEiJ_P0092553 Cul5 protein_coding protein_coding MGP_CASTEiJ_T0092554.1 MGP_CASTEiJ_G0033819.1 mouse_genomes_project 9 52580050 52585387 - Cul5 protein_coding retained_intron MGP_CASTEiJ_T0092555.1 MGP_CASTEiJ_G0033819.1 mouse_genomes_project 9 52580474 52634739 - MGP_CASTEiJ_P0092555 Cul5 protein_coding protein_coding MGP_CASTEiJ_T0092556.1 MGP_CASTEiJ_G0033819.1 mouse_genomes_project 9 52581131 52634404 - MGP_CASTEiJ_P0092556 Cul5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092557.1 MGP_CASTEiJ_G0033819.1 mouse_genomes_project 9 52592077 52611493 - Cul5 protein_coding retained_intron MGP_CASTEiJ_T0092558.1 MGP_CASTEiJ_G0033819.1 mouse_genomes_project 9 52596764 52634715 - Cul5 protein_coding retained_intron MGP_CASTEiJ_T0092559.1 MGP_CASTEiJ_G0033819.1 mouse_genomes_project 9 52605997 52611589 - Cul5 protein_coding retained_intron MGP_CASTEiJ_T0092560.1 MGP_CASTEiJ_G0033819.1 mouse_genomes_project 9 52611347 52626118 - Cul5 protein_coding processed_transcript MGP_CASTEiJ_T0092561.1 MGP_CASTEiJ_G0033819.1 mouse_genomes_project 9 52622795 52634300 - MGP_CASTEiJ_P0092561 Cul5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094649.1 MGP_CASTEiJ_G0034276.1 mouse_genomes_project 9 108955140 108958702 + MGP_CASTEiJ_P0094649 Gmppb protein_coding protein_coding MGP_CASTEiJ_T0094650.1 MGP_CASTEiJ_G0034276.1 mouse_genomes_project 9 108955167 108955480 + Gmppb protein_coding processed_transcript MGP_CASTEiJ_T0094651.1 MGP_CASTEiJ_G0034276.1 mouse_genomes_project 9 108955187 108957815 + Gmppb protein_coding retained_intron MGP_CASTEiJ_T0094652.1 MGP_CASTEiJ_G0034276.1 mouse_genomes_project 9 108955223 108957601 + MGP_CASTEiJ_P0094652 Gmppb protein_coding protein_coding MGP_CASTEiJ_T0094653.1 MGP_CASTEiJ_G0034276.1 mouse_genomes_project 9 108955353 108957418 + Gmppb protein_coding retained_intron MGP_CASTEiJ_T0095275.1 MGP_CASTEiJ_G0034385.1 mouse_genomes_project 9 116315000 116352954 - MGP_CASTEiJ_P0095275 Gpd1l protein_coding protein_coding MGP_CASTEiJ_T0095276.1 MGP_CASTEiJ_G0034385.1 mouse_genomes_project 9 116318997 116353118 - MGP_CASTEiJ_P0095276 Gpd1l protein_coding protein_coding MGP_CASTEiJ_T0095277.1 MGP_CASTEiJ_G0034385.1 mouse_genomes_project 9 116326583 116335308 - Gpd1l protein_coding processed_transcript MGP_CASTEiJ_T0091362.1 MGP_CASTEiJ_G0033366.1 mouse_genomes_project 9 11835609 11890255 + MGP_CASTEiJ_P0091362 Mre11a protein_coding protein_coding MGP_CASTEiJ_T0091363.1 MGP_CASTEiJ_G0033366.1 mouse_genomes_project 9 11835631 11894371 + MGP_CASTEiJ_P0091363 Mre11a protein_coding protein_coding MGP_CASTEiJ_T0091364.1 MGP_CASTEiJ_G0033366.1 mouse_genomes_project 9 11835657 11851991 + MGP_CASTEiJ_P0091364 Mre11a protein_coding protein_coding MGP_CASTEiJ_T0091365.1 MGP_CASTEiJ_G0033366.1 mouse_genomes_project 9 11835836 11888519 + MGP_CASTEiJ_P0091365 Mre11a protein_coding unknown_likely_coding MGP_CASTEiJ_T0091366.1 MGP_CASTEiJ_G0033366.1 mouse_genomes_project 9 11849401 11866158 + MGP_CASTEiJ_P0091366 Mre11a protein_coding protein_coding MGP_CASTEiJ_T0091367.1 MGP_CASTEiJ_G0033366.1 mouse_genomes_project 9 11849414 11856367 + MGP_CASTEiJ_P0091367 Mre11a protein_coding protein_coding MGP_CASTEiJ_T0010797.1 MGP_CASTEiJ_G0008985.1 mouse_genomes_project 9 124200144 124200283 - Mir8106 miRNA miRNA MGP_CASTEiJ_T0093482.1 MGP_CASTEiJ_G0034056.1 mouse_genomes_project 9 77785774 77903701 - MGP_CASTEiJ_P0093482 Lrrc1 protein_coding protein_coding MGP_CASTEiJ_T0093483.1 MGP_CASTEiJ_G0034056.1 mouse_genomes_project 9 77785931 77902926 - MGP_CASTEiJ_P0093483 Lrrc1 protein_coding protein_coding MGP_CASTEiJ_T0093484.1 MGP_CASTEiJ_G0034056.1 mouse_genomes_project 9 77786025 77803645 - Lrrc1 protein_coding processed_transcript MGP_CASTEiJ_T0093485.1 MGP_CASTEiJ_G0034056.1 mouse_genomes_project 9 77786040 77797047 - MGP_CASTEiJ_P0093485 Lrrc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093486.1 MGP_CASTEiJ_G0034056.1 mouse_genomes_project 9 77790036 77797345 - Lrrc1 protein_coding retained_intron MGP_CASTEiJ_T0093487.1 MGP_CASTEiJ_G0034056.1 mouse_genomes_project 9 77803650 77903681 - MGP_CASTEiJ_P0093487 Lrrc1 protein_coding protein_coding MGP_CASTEiJ_T0093488.1 MGP_CASTEiJ_G0034056.1 mouse_genomes_project 9 77814206 77854947 - Lrrc1 protein_coding processed_transcript MGP_CASTEiJ_T0093489.1 MGP_CASTEiJ_G0034056.1 mouse_genomes_project 9 77822908 77903636 - MGP_CASTEiJ_P0093489 Lrrc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093490.1 MGP_CASTEiJ_G0034056.1 mouse_genomes_project 9 77828098 77903679 - Lrrc1 protein_coding processed_transcript MGP_CASTEiJ_T0093491.1 MGP_CASTEiJ_G0034056.1 mouse_genomes_project 9 77899345 77903621 - Lrrc1 protein_coding retained_intron MGP_CASTEiJ_T0092640.1 MGP_CASTEiJ_G0033848.1 mouse_genomes_project 9 54604334 54977607 - MGP_CASTEiJ_P0092640 Scaper protein_coding protein_coding MGP_CASTEiJ_T0092641.1 MGP_CASTEiJ_G0033848.1 mouse_genomes_project 9 54810016 54996083 - MGP_CASTEiJ_P0092641 Scaper protein_coding unknown_likely_coding MGP_CASTEiJ_T0092642.1 MGP_CASTEiJ_G0033848.1 mouse_genomes_project 9 54876913 54916274 - MGP_CASTEiJ_P0092642 Scaper protein_coding unknown_likely_coding MGP_CASTEiJ_T0094068.1 MGP_CASTEiJ_G0034181.1 mouse_genomes_project 9 103025619 103066476 + MGP_CASTEiJ_P0094068 Ky protein_coding protein_coding MGP_CASTEiJ_T0094069.1 MGP_CASTEiJ_G0034181.1 mouse_genomes_project 9 103040737 103048250 + Ky protein_coding retained_intron MGP_CASTEiJ_T0095515.1 MGP_CASTEiJ_G0034455.1 mouse_genomes_project 9 124833874 124841839 + MGP_CASTEiJ_P0095515 Zfp105 protein_coding protein_coding MGP_CASTEiJ_T0095516.1 MGP_CASTEiJ_G0034455.1 mouse_genomes_project 9 124833901 124840489 + MGP_CASTEiJ_P0095516 Zfp105 protein_coding protein_coding MGP_CASTEiJ_T0009050.1 MGP_CASTEiJ_G0007290.1 mouse_genomes_project 9 83812224 83828011 - Gm27216 lincRNA lincRNA MGP_CASTEiJ_T0009051.1 MGP_CASTEiJ_G0007290.1 mouse_genomes_project 9 83812234 83828561 - Gm27216 lincRNA lincRNA MGP_CASTEiJ_T0009052.1 MGP_CASTEiJ_G0007290.1 mouse_genomes_project 9 83812254 83828508 - Gm27216 lincRNA lincRNA MGP_CASTEiJ_T0002394.1 MGP_CASTEiJ_G0002311.1 mouse_genomes_project 9 111598874 111600962 + TEC TEC MGP_CASTEiJ_T0100161.1 MGP_CASTEiJ_G0037074.1 mouse_genomes_project 9 106424207 106424284 - Gm22720 snRNA snRNA MGP_CASTEiJ_T0092201.1 MGP_CASTEiJ_G0033710.1 mouse_genomes_project 9 42833718 42846673 + MGP_CASTEiJ_P0092201 Hyou1 protein_coding protein_coding MGP_CASTEiJ_T0092202.1 MGP_CASTEiJ_G0033710.1 mouse_genomes_project 9 42833774 42845840 + MGP_CASTEiJ_P0092202 Hyou1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092203.1 MGP_CASTEiJ_G0033710.1 mouse_genomes_project 9 42833785 42845058 + Hyou1 protein_coding retained_intron MGP_CASTEiJ_T0092204.1 MGP_CASTEiJ_G0033710.1 mouse_genomes_project 9 42833801 42846667 + MGP_CASTEiJ_P0092204 Hyou1 protein_coding protein_coding MGP_CASTEiJ_T0092205.1 MGP_CASTEiJ_G0033710.1 mouse_genomes_project 9 42833812 42840308 + Hyou1 protein_coding retained_intron MGP_CASTEiJ_T0092206.1 MGP_CASTEiJ_G0033710.1 mouse_genomes_project 9 42833851 42845424 + MGP_CASTEiJ_P0092206 Hyou1 protein_coding protein_coding MGP_CASTEiJ_T0092207.1 MGP_CASTEiJ_G0033710.1 mouse_genomes_project 9 42834757 42838385 + MGP_CASTEiJ_P0092207 Hyou1 protein_coding protein_coding MGP_CASTEiJ_T0092208.1 MGP_CASTEiJ_G0033710.1 mouse_genomes_project 9 42844982 42845634 + Hyou1 protein_coding retained_intron MGP_CASTEiJ_T0093532.1 MGP_CASTEiJ_G0034073.1 mouse_genomes_project 9 80041306 80166096 - MGP_CASTEiJ_P0093532 Col12a1 protein_coding protein_coding MGP_CASTEiJ_T0093533.1 MGP_CASTEiJ_G0034073.1 mouse_genomes_project 9 80041306 80055900 - MGP_CASTEiJ_P0093533 Col12a1 protein_coding protein_coding MGP_CASTEiJ_T0093534.1 MGP_CASTEiJ_G0034073.1 mouse_genomes_project 9 80044071 80166298 - MGP_CASTEiJ_P0093534 Col12a1 protein_coding protein_coding MGP_CASTEiJ_T0093535.1 MGP_CASTEiJ_G0034073.1 mouse_genomes_project 9 80136096 80166298 - Col12a1 protein_coding retained_intron MGP_CASTEiJ_T0093536.1 MGP_CASTEiJ_G0034073.1 mouse_genomes_project 9 80160114 80166409 - Col12a1 protein_coding retained_intron MGP_CASTEiJ_T0093537.1 MGP_CASTEiJ_G0034073.1 mouse_genomes_project 9 80162483 80166072 - Col12a1 protein_coding retained_intron MGP_CASTEiJ_T0002283.1 MGP_CASTEiJ_G0002201.1 mouse_genomes_project 9 32405881 32406792 + TEC TEC MGP_CASTEiJ_T0002369.1 MGP_CASTEiJ_G0002286.1 mouse_genomes_project 9 104038636 104038954 + TEC TEC MGP_CASTEiJ_T0094810.1 MGP_CASTEiJ_G0034300.1 mouse_genomes_project 9 109514536 109517425 + MGP_CASTEiJ_P0094810 Dalrd3 protein_coding protein_coding MGP_CASTEiJ_T0094811.1 MGP_CASTEiJ_G0034300.1 mouse_genomes_project 9 109514560 109516170 + MGP_CASTEiJ_P0094811 Dalrd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094812.1 MGP_CASTEiJ_G0034300.1 mouse_genomes_project 9 109514564 109515337 + Dalrd3 protein_coding retained_intron MGP_CASTEiJ_T0094813.1 MGP_CASTEiJ_G0034300.1 mouse_genomes_project 9 109515346 109516626 + Dalrd3 protein_coding retained_intron MGP_CASTEiJ_T0094814.1 MGP_CASTEiJ_G0034300.1 mouse_genomes_project 9 109515657 109516485 + Dalrd3 protein_coding retained_intron MGP_CASTEiJ_T0094815.1 MGP_CASTEiJ_G0034300.1 mouse_genomes_project 9 109515887 109517424 + Dalrd3 protein_coding retained_intron MGP_CASTEiJ_T0094816.1 MGP_CASTEiJ_G0034300.1 mouse_genomes_project 9 109516168 109517182 + MGP_CASTEiJ_P0094816 Dalrd3 protein_coding protein_coding MGP_CASTEiJ_T0094817.1 MGP_CASTEiJ_G0034300.1 mouse_genomes_project 9 109516917 109517422 + Dalrd3 protein_coding retained_intron MGP_CASTEiJ_T0094819.1 MGP_CASTEiJ_G0034300.1 mouse_genomes_project 9 109517042 109517306 + MGP_CASTEiJ_P0094819 Dalrd3 protein_coding protein_coding MGP_CASTEiJ_T0093444.1 MGP_CASTEiJ_G0034046.1 mouse_genomes_project 9 75803671 75839715 - MGP_CASTEiJ_P0093444 Tmod2 protein_coding protein_coding MGP_CASTEiJ_T0093445.1 MGP_CASTEiJ_G0034046.1 mouse_genomes_project 9 75803671 75852070 - MGP_CASTEiJ_P0093445 Tmod2 protein_coding protein_coding MGP_CASTEiJ_T0093446.1 MGP_CASTEiJ_G0034046.1 mouse_genomes_project 9 75813065 75838234 - MGP_CASTEiJ_P0093446 Tmod2 protein_coding protein_coding MGP_CASTEiJ_T0095414.1 MGP_CASTEiJ_G0034425.1 mouse_genomes_project 9 122389388 122421179 + MGP_CASTEiJ_P0095414 Entpd3 protein_coding protein_coding MGP_CASTEiJ_T0095415.1 MGP_CASTEiJ_G0034425.1 mouse_genomes_project 9 122410912 122413846 + Entpd3 protein_coding retained_intron MGP_CASTEiJ_T0015448.1 MGP_CASTEiJ_G0013611.1 mouse_genomes_project 9 65035130 65035518 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091342.1 MGP_CASTEiJ_G0033357.1 mouse_genomes_project 9 11284357 11334087 + MGP_CASTEiJ_P0091342 Sesn3 protein_coding protein_coding MGP_CASTEiJ_T0091343.1 MGP_CASTEiJ_G0033357.1 mouse_genomes_project 9 11284525 11330892 + MGP_CASTEiJ_P0091343 Sesn3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0017811.1 MGP_CASTEiJ_G0015067.1 mouse_genomes_project 9 95835702 95836996 - Gm16127 processed_transcript processed_transcript MGP_CASTEiJ_T0091312.1 MGP_CASTEiJ_G0033353.1 mouse_genomes_project 9 10404726 10406114 + MGP_CASTEiJ_P0091312 Phxr4 protein_coding protein_coding MGP_CASTEiJ_T0092392.1 MGP_CASTEiJ_G0033764.1 mouse_genomes_project 9 47122877 47135694 + MGP_CASTEiJ_P0092392 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0002355.1 MGP_CASTEiJ_G0002272.1 mouse_genomes_project 9 101584503 101587313 + TEC TEC MGP_CASTEiJ_T0091914.1 MGP_CASTEiJ_G0033562.1 mouse_genomes_project 9 34783091 34988484 - MGP_CASTEiJ_P0091914 Pknox2 protein_coding protein_coding MGP_CASTEiJ_T0091915.1 MGP_CASTEiJ_G0033562.1 mouse_genomes_project 9 34783091 35056788 - MGP_CASTEiJ_P0091915 Pknox2 protein_coding protein_coding MGP_CASTEiJ_T0091916.1 MGP_CASTEiJ_G0033562.1 mouse_genomes_project 9 34783094 35056813 - MGP_CASTEiJ_P0091916 Pknox2 protein_coding protein_coding MGP_CASTEiJ_T0091917.1 MGP_CASTEiJ_G0033562.1 mouse_genomes_project 9 34784587 34867266 - MGP_CASTEiJ_P0091917 Pknox2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091918.1 MGP_CASTEiJ_G0033562.1 mouse_genomes_project 9 34784751 34988454 - Pknox2 protein_coding processed_transcript MGP_CASTEiJ_T0091919.1 MGP_CASTEiJ_G0033562.1 mouse_genomes_project 9 34817137 34988454 - Pknox2 protein_coding retained_intron MGP_CASTEiJ_T0091920.1 MGP_CASTEiJ_G0033562.1 mouse_genomes_project 9 34830451 34988454 - Pknox2 protein_coding retained_intron MGP_CASTEiJ_T0091921.1 MGP_CASTEiJ_G0033562.1 mouse_genomes_project 9 34832261 34988454 - MGP_CASTEiJ_P0091921 Pknox2 protein_coding protein_coding MGP_CASTEiJ_T0091922.1 MGP_CASTEiJ_G0033562.1 mouse_genomes_project 9 34832274 35047065 - MGP_CASTEiJ_P0091922 Pknox2 protein_coding protein_coding MGP_CASTEiJ_T0091923.1 MGP_CASTEiJ_G0033562.1 mouse_genomes_project 9 34832290 35056821 - MGP_CASTEiJ_P0091923 Pknox2 protein_coding protein_coding MGP_CASTEiJ_T0091924.1 MGP_CASTEiJ_G0033562.1 mouse_genomes_project 9 34852140 35055157 - MGP_CASTEiJ_P0091924 Pknox2 protein_coding protein_coding MGP_CASTEiJ_T0091925.1 MGP_CASTEiJ_G0033562.1 mouse_genomes_project 9 34887497 35056765 - Pknox2 protein_coding processed_transcript MGP_CASTEiJ_T0009021.1 MGP_CASTEiJ_G0007266.1 mouse_genomes_project 9 60819517 60820911 - Gm10655 lincRNA lincRNA MGP_CASTEiJ_T0009022.1 MGP_CASTEiJ_G0007266.1 mouse_genomes_project 9 60819598 60820348 - Gm10655 lincRNA lincRNA MGP_CASTEiJ_T0098674.1 MGP_CASTEiJ_G0035605.1 mouse_genomes_project 9 63670756 63670851 + Gm25606 rRNA rRNA MGP_CASTEiJ_T0011410.1 MGP_CASTEiJ_G0009598.1 mouse_genomes_project 9 80514013 80514299 + Gm25433 misc_RNA misc_RNA MGP_CASTEiJ_T0092303.1 MGP_CASTEiJ_G0033741.1 mouse_genomes_project 9 43841628 43870366 + MGP_CASTEiJ_P0092303 Tmprss13 protein_coding protein_coding MGP_CASTEiJ_T0015436.1 MGP_CASTEiJ_G0013599.1 mouse_genomes_project 9 47804058 47804751 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092615.1 MGP_CASTEiJ_G0033843.1 mouse_genomes_project 9 54185112 54248752 + MGP_CASTEiJ_P0092615 Ube2q2 protein_coding protein_coding MGP_CASTEiJ_T0092616.1 MGP_CASTEiJ_G0033843.1 mouse_genomes_project 9 54185352 54247456 + MGP_CASTEiJ_P0092616 Ube2q2 protein_coding protein_coding MGP_CASTEiJ_T0092992.1 MGP_CASTEiJ_G0033942.1 mouse_genomes_project 9 63825162 63896579 - MGP_CASTEiJ_P0092992 Map2k1 protein_coding protein_coding MGP_CASTEiJ_T0092993.1 MGP_CASTEiJ_G0033942.1 mouse_genomes_project 9 63825921 63827257 - Map2k1 protein_coding retained_intron MGP_CASTEiJ_T0092994.1 MGP_CASTEiJ_G0033942.1 mouse_genomes_project 9 63826129 63827648 - Map2k1 protein_coding retained_intron MGP_CASTEiJ_T0092995.1 MGP_CASTEiJ_G0033942.1 mouse_genomes_project 9 63826681 63835073 - Map2k1 protein_coding processed_transcript MGP_CASTEiJ_T0091523.1 MGP_CASTEiJ_G0033430.1 mouse_genomes_project 9 18091271 18139083 - MGP_CASTEiJ_P0091523 Col5a3 protein_coding protein_coding MGP_CASTEiJ_T0091524.1 MGP_CASTEiJ_G0033430.1 mouse_genomes_project 9 18104563 18139083 - Col5a3 protein_coding retained_intron MGP_CASTEiJ_T0091550.1 MGP_CASTEiJ_G0033446.1 mouse_genomes_project 9 18477673 18489125 - MGP_CASTEiJ_P0091550 Cdc37 protein_coding protein_coding MGP_CASTEiJ_T0010736.1 MGP_CASTEiJ_G0008924.1 mouse_genomes_project 9 18998757 18998890 - Mir1946b miRNA miRNA MGP_CASTEiJ_T0094842.1 MGP_CASTEiJ_G0034305.1 mouse_genomes_project 9 109643630 109686262 + MGP_CASTEiJ_P0094842 Prkar2a protein_coding protein_coding MGP_CASTEiJ_T0094843.1 MGP_CASTEiJ_G0034305.1 mouse_genomes_project 9 109646459 109713661 + MGP_CASTEiJ_P0094843 Prkar2a protein_coding protein_coding MGP_CASTEiJ_T0094844.1 MGP_CASTEiJ_G0034305.1 mouse_genomes_project 9 109646773 109710228 + MGP_CASTEiJ_P0094844 Prkar2a protein_coding protein_coding MGP_CASTEiJ_T0094845.1 MGP_CASTEiJ_G0034305.1 mouse_genomes_project 9 109674774 109706074 + MGP_CASTEiJ_P0094845 Prkar2a protein_coding protein_coding MGP_CASTEiJ_T0094846.1 MGP_CASTEiJ_G0034305.1 mouse_genomes_project 9 109701666 109702991 + Prkar2a protein_coding retained_intron MGP_CASTEiJ_T0094847.1 MGP_CASTEiJ_G0034305.1 mouse_genomes_project 9 109711478 109712730 + Prkar2a protein_coding processed_transcript MGP_CASTEiJ_T0091998.1 MGP_CASTEiJ_G0033613.1 mouse_genomes_project 9 36672698 36673646 - MGP_CASTEiJ_P0091998 Olfr919 protein_coding protein_coding MGP_CASTEiJ_T0092101.1 MGP_CASTEiJ_G0033677.1 mouse_genomes_project 9 39104664 39171663 - MGP_CASTEiJ_P0092101 Jhy protein_coding protein_coding MGP_CASTEiJ_T0092102.1 MGP_CASTEiJ_G0033677.1 mouse_genomes_project 9 39104666 39107424 - Jhy protein_coding retained_intron MGP_CASTEiJ_T0092103.1 MGP_CASTEiJ_G0033677.1 mouse_genomes_project 9 39168449 39169887 - MGP_CASTEiJ_P0092103 Jhy protein_coding protein_coding MGP_CASTEiJ_T0002362.1 MGP_CASTEiJ_G0002279.1 mouse_genomes_project 9 102499487 102500535 + TEC TEC MGP_CASTEiJ_T0010723.1 MGP_CASTEiJ_G0008911.1 mouse_genomes_project 9 1414204 1414288 - Gm23811 miRNA miRNA MGP_CASTEiJ_T0092061.1 MGP_CASTEiJ_G0033664.1 mouse_genomes_project 9 38265514 38267056 - MGP_CASTEiJ_P0092061 Olfr983 protein_coding protein_coding MGP_CASTEiJ_T0100151.1 MGP_CASTEiJ_G0037064.1 mouse_genomes_project 9 87421351 87421465 - Gm25949 snRNA snRNA MGP_CASTEiJ_T0091790.1 MGP_CASTEiJ_G0033527.1 mouse_genomes_project 9 30132531 30162457 - MGP_CASTEiJ_P0091790 Kcnj5 protein_coding protein_coding MGP_CASTEiJ_T0010783.1 MGP_CASTEiJ_G0008971.1 mouse_genomes_project 9 109512955 109513075 - Gm24083 miRNA miRNA MGP_CASTEiJ_T0002316.1 MGP_CASTEiJ_G0002234.1 mouse_genomes_project 9 77067459 77070765 + TEC TEC MGP_CASTEiJ_T0095441.1 MGP_CASTEiJ_G0034430.1 mouse_genomes_project 9 123247017 123354466 + MGP_CASTEiJ_P0095441 Trak1 protein_coding protein_coding MGP_CASTEiJ_T0095442.1 MGP_CASTEiJ_G0034430.1 mouse_genomes_project 9 123265158 123342493 + MGP_CASTEiJ_P0095442 Trak1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095443.1 MGP_CASTEiJ_G0034430.1 mouse_genomes_project 9 123289547 123333474 + MGP_CASTEiJ_P0095443 Trak1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095203.1 MGP_CASTEiJ_G0034365.1 mouse_genomes_project 9 112696164 112827998 - MGP_CASTEiJ_P0095203 Stac protein_coding protein_coding MGP_CASTEiJ_T0095204.1 MGP_CASTEiJ_G0034365.1 mouse_genomes_project 9 112696164 112827875 - MGP_CASTEiJ_P0095204 Stac protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095205.1 MGP_CASTEiJ_G0034365.1 mouse_genomes_project 9 112774971 112827979 - Stac protein_coding processed_transcript MGP_CASTEiJ_T0015542.1 MGP_CASTEiJ_G0013705.1 mouse_genomes_project 9 109505326 109510182 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009055.1 MGP_CASTEiJ_G0007293.1 mouse_genomes_project 9 88960266 88963412 + Gm28231 lincRNA lincRNA MGP_CASTEiJ_T0015503.1 MGP_CASTEiJ_G0013666.1 mouse_genomes_project 9 92674076 92674217 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005325.1 MGP_CASTEiJ_G0004512.1 mouse_genomes_project 9 66696903 66697747 + Gm17098 antisense antisense MGP_CASTEiJ_T0092630.1 MGP_CASTEiJ_G0033846.1 mouse_genomes_project 9 54499409 54561507 - MGP_CASTEiJ_P0092630 Etfa protein_coding protein_coding MGP_CASTEiJ_T0092631.1 MGP_CASTEiJ_G0033846.1 mouse_genomes_project 9 54519284 54534545 - Etfa protein_coding processed_transcript MGP_CASTEiJ_T0092632.1 MGP_CASTEiJ_G0033846.1 mouse_genomes_project 9 54533768 54561384 - Etfa protein_coding processed_transcript MGP_CASTEiJ_T0092633.1 MGP_CASTEiJ_G0033846.1 mouse_genomes_project 9 54537433 54561072 - Etfa protein_coding processed_transcript MGP_CASTEiJ_T0011400.1 MGP_CASTEiJ_G0009588.1 mouse_genomes_project 9 212344 212428 - Gm27679 misc_RNA misc_RNA MGP_CASTEiJ_T0011411.1 MGP_CASTEiJ_G0009599.1 mouse_genomes_project 9 89264661 89265355 + Gm26461 misc_RNA misc_RNA MGP_CASTEiJ_T0092041.1 MGP_CASTEiJ_G0033644.1 mouse_genomes_project 9 37819682 37820704 + MGP_CASTEiJ_P0092041 Olfr961 protein_coding protein_coding MGP_CASTEiJ_T0015452.1 MGP_CASTEiJ_G0013615.1 mouse_genomes_project 9 71991695 71994483 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010768.1 MGP_CASTEiJ_G0008956.1 mouse_genomes_project 9 70852156 70852238 - Gm25149 miRNA miRNA MGP_CASTEiJ_T0094141.1 MGP_CASTEiJ_G0034195.1 mouse_genomes_project 9 104018685 104081748 - MGP_CASTEiJ_P0094141 Bfsp2 protein_coding protein_coding MGP_CASTEiJ_T0094142.1 MGP_CASTEiJ_G0034195.1 mouse_genomes_project 9 104018689 104044219 - Bfsp2 protein_coding processed_transcript MGP_CASTEiJ_T0095152.1 MGP_CASTEiJ_G0034357.1 mouse_genomes_project 9 112073812 112079883 - MGP_CASTEiJ_P0095152 Rtp3 protein_coding protein_coding MGP_CASTEiJ_T0095153.1 MGP_CASTEiJ_G0034357.1 mouse_genomes_project 9 112075760 112080041 - MGP_CASTEiJ_P0095153 Rtp3 protein_coding protein_coding MGP_CASTEiJ_T0017787.1 MGP_CASTEiJ_G0015057.1 mouse_genomes_project 9 63707132 63714878 + Scarletltr processed_transcript processed_transcript MGP_CASTEiJ_T0094620.1 MGP_CASTEiJ_G0034272.1 mouse_genomes_project 9 108884150 108885806 - MGP_CASTEiJ_P0094620 Fam212a protein_coding protein_coding MGP_CASTEiJ_T0094621.1 MGP_CASTEiJ_G0034272.1 mouse_genomes_project 9 108884560 108885559 - MGP_CASTEiJ_P0094621 Fam212a protein_coding protein_coding MGP_CASTEiJ_T0091299.1 MGP_CASTEiJ_G0033349.1 mouse_genomes_project 9 5996057 6253365 - MGP_CASTEiJ_P0091299 Arhgap42 protein_coding protein_coding MGP_CASTEiJ_T0091300.1 MGP_CASTEiJ_G0033349.1 mouse_genomes_project 9 5996113 6253043 - MGP_CASTEiJ_P0091300 Arhgap42 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091301.1 MGP_CASTEiJ_G0033349.1 mouse_genomes_project 9 6013042 6253365 - Arhgap42 protein_coding retained_intron MGP_CASTEiJ_T0091302.1 MGP_CASTEiJ_G0033349.1 mouse_genomes_project 9 6013045 6253185 - MGP_CASTEiJ_P0091302 Arhgap42 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091303.1 MGP_CASTEiJ_G0033349.1 mouse_genomes_project 9 6155330 6253290 - MGP_CASTEiJ_P0091303 Arhgap42 protein_coding protein_coding MGP_CASTEiJ_T0095272.1 MGP_CASTEiJ_G0034383.1 mouse_genomes_project 9 116163747 116188564 - MGP_CASTEiJ_P0095272 Cmtm7 protein_coding protein_coding MGP_CASTEiJ_T0095273.1 MGP_CASTEiJ_G0034383.1 mouse_genomes_project 9 116163747 116188564 - MGP_CASTEiJ_P0095273 Cmtm7 protein_coding protein_coding MGP_CASTEiJ_T0091813.1 MGP_CASTEiJ_G0033534.1 mouse_genomes_project 9 33083182 33101684 - MGP_CASTEiJ_P0091813 Tirap protein_coding protein_coding MGP_CASTEiJ_T0091814.1 MGP_CASTEiJ_G0033534.1 mouse_genomes_project 9 33086681 33101381 - MGP_CASTEiJ_P0091814 Tirap protein_coding protein_coding MGP_CASTEiJ_T0091815.1 MGP_CASTEiJ_G0033534.1 mouse_genomes_project 9 33086681 33101321 - MGP_CASTEiJ_P0091815 Tirap protein_coding protein_coding MGP_CASTEiJ_T0091816.1 MGP_CASTEiJ_G0033534.1 mouse_genomes_project 9 33087243 33101363 - MGP_CASTEiJ_P0091816 Tirap protein_coding protein_coding MGP_CASTEiJ_T0091817.1 MGP_CASTEiJ_G0033534.1 mouse_genomes_project 9 33088640 33101276 - MGP_CASTEiJ_P0091817 Tirap protein_coding protein_coding MGP_CASTEiJ_T0091818.1 MGP_CASTEiJ_G0033534.1 mouse_genomes_project 9 33088937 33091315 - MGP_CASTEiJ_P0091818 Tirap protein_coding protein_coding MGP_CASTEiJ_T0091819.1 MGP_CASTEiJ_G0033534.1 mouse_genomes_project 9 33090951 33100892 - MGP_CASTEiJ_P0091819 Tirap protein_coding protein_coding MGP_CASTEiJ_T0015497.1 MGP_CASTEiJ_G0013660.1 mouse_genomes_project 9 90847871 90848467 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009115.1 MGP_CASTEiJ_G0007338.1 mouse_genomes_project 9 120038038 120040005 - Platr11 lincRNA lincRNA MGP_CASTEiJ_T0005401.1 MGP_CASTEiJ_G0004566.1 mouse_genomes_project 9 110323809 110331698 + antisense antisense MGP_CASTEiJ_T0005272.1 MGP_CASTEiJ_G0004479.1 mouse_genomes_project 9 17912986 17924255 + Fbxl12os antisense antisense MGP_CASTEiJ_T0005273.1 MGP_CASTEiJ_G0004479.1 mouse_genomes_project 9 17913173 17920510 + Fbxl12os antisense antisense MGP_CASTEiJ_T0005274.1 MGP_CASTEiJ_G0004479.1 mouse_genomes_project 9 17913321 17920515 + Fbxl12os antisense antisense MGP_CASTEiJ_T0005275.1 MGP_CASTEiJ_G0004479.1 mouse_genomes_project 9 17920247 17921406 + Fbxl12os antisense antisense MGP_CASTEiJ_T0002330.1 MGP_CASTEiJ_G0002247.1 mouse_genomes_project 9 88443775 88446579 + TEC TEC MGP_CASTEiJ_T0091619.1 MGP_CASTEiJ_G0033467.1 mouse_genomes_project 9 19199306 19254751 - MGP_CASTEiJ_P0091619 Dock6 protein_coding protein_coding MGP_CASTEiJ_T0091620.1 MGP_CASTEiJ_G0033467.1 mouse_genomes_project 9 19199479 19234517 - MGP_CASTEiJ_P0091620 Dock6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091622.1 MGP_CASTEiJ_G0033467.1 mouse_genomes_project 9 19236963 19254704 - MGP_CASTEiJ_P0091622 Dock6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0015413.1 MGP_CASTEiJ_G0013576.1 mouse_genomes_project 9 11777853 11779790 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091474.1 MGP_CASTEiJ_G0033422.1 mouse_genomes_project 9 17722408 17752929 - MGP_CASTEiJ_P0091474 Zfp26 protein_coding protein_coding MGP_CASTEiJ_T0091475.1 MGP_CASTEiJ_G0033422.1 mouse_genomes_project 9 17724462 17752726 - Zfp26 protein_coding retained_intron MGP_CASTEiJ_T0091476.1 MGP_CASTEiJ_G0033422.1 mouse_genomes_project 9 17726495 17752758 - Zfp26 protein_coding retained_intron MGP_CASTEiJ_T0091477.1 MGP_CASTEiJ_G0033422.1 mouse_genomes_project 9 17727732 17730789 - Zfp26 protein_coding processed_transcript MGP_CASTEiJ_T0091478.1 MGP_CASTEiJ_G0033422.1 mouse_genomes_project 9 17731443 17752931 - Zfp26 protein_coding retained_intron MGP_CASTEiJ_T0091479.1 MGP_CASTEiJ_G0033422.1 mouse_genomes_project 9 17733734 17752596 - MGP_CASTEiJ_P0091479 Zfp26 protein_coding protein_coding MGP_CASTEiJ_T0005406.1 MGP_CASTEiJ_G0004571.1 mouse_genomes_project 9 112696150 112696769 + Gm43236 antisense antisense MGP_CASTEiJ_T0005418.1 MGP_CASTEiJ_G0004579.1 mouse_genomes_project 9 123728608 123739206 + Gm17163 antisense antisense MGP_CASTEiJ_T0091661.1 MGP_CASTEiJ_G0033488.1 mouse_genomes_project 9 19728587 19764009 - MGP_CASTEiJ_P0091661 Zfp810 protein_coding protein_coding MGP_CASTEiJ_T0095519.1 MGP_CASTEiJ_G0034457.1 mouse_genomes_project 9 124865533 124943721 + MGP_CASTEiJ_P0095519 Kif15 protein_coding protein_coding MGP_CASTEiJ_T0093262.1 MGP_CASTEiJ_G0034013.1 mouse_genomes_project 9 71535134 71658000 - MGP_CASTEiJ_P0093262 Gcom1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093263.1 MGP_CASTEiJ_G0034013.1 mouse_genomes_project 9 71535134 71658000 - MGP_CASTEiJ_P0093263 Gcom1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093264.1 MGP_CASTEiJ_G0034013.1 mouse_genomes_project 9 71535134 71658000 - MGP_CASTEiJ_P0093264 Gcom1 protein_coding protein_coding MGP_CASTEiJ_T0093265.1 MGP_CASTEiJ_G0034013.1 mouse_genomes_project 9 71535134 71658000 - MGP_CASTEiJ_P0093265 Gcom1 protein_coding protein_coding MGP_CASTEiJ_T0101667.1 MGP_CASTEiJ_G0038501.1 mouse_genomes_project 9 11902720 11903527 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0015459.1 MGP_CASTEiJ_G0013622.1 mouse_genomes_project 9 73237260 73237567 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0094595.1 MGP_CASTEiJ_G0034269.1 mouse_genomes_project 9 108849050 108870539 + Traip protein_coding retained_intron MGP_CASTEiJ_T0094596.1 MGP_CASTEiJ_G0034269.1 mouse_genomes_project 9 108849865 108871284 + MGP_CASTEiJ_P0094596 Traip protein_coding protein_coding MGP_CASTEiJ_T0094597.1 MGP_CASTEiJ_G0034269.1 mouse_genomes_project 9 108849876 108857415 + Traip protein_coding processed_transcript MGP_CASTEiJ_T0094598.1 MGP_CASTEiJ_G0034269.1 mouse_genomes_project 9 108849897 108859974 + MGP_CASTEiJ_P0094598 Traip protein_coding protein_coding MGP_CASTEiJ_T0094599.1 MGP_CASTEiJ_G0034269.1 mouse_genomes_project 9 108859319 108860590 + Traip protein_coding processed_transcript MGP_CASTEiJ_T0094600.1 MGP_CASTEiJ_G0034269.1 mouse_genomes_project 9 108861100 108867658 + Traip protein_coding retained_intron MGP_CASTEiJ_T0094601.1 MGP_CASTEiJ_G0034269.1 mouse_genomes_project 9 108861161 108867755 + Traip protein_coding retained_intron MGP_CASTEiJ_T0098417.1 MGP_CASTEiJ_G0035348.1 mouse_genomes_project 9 36472705 36473639 + pseudogene pseudogene MGP_CASTEiJ_T0093750.1 MGP_CASTEiJ_G0034114.1 mouse_genomes_project 9 89990192 89997519 + MGP_CASTEiJ_P0093750 Rasgrf1 protein_coding protein_coding MGP_CASTEiJ_T0093751.1 MGP_CASTEiJ_G0034114.1 mouse_genomes_project 9 89990193 89997506 + MGP_CASTEiJ_P0093751 Rasgrf1 protein_coding protein_coding MGP_CASTEiJ_T0093752.1 MGP_CASTEiJ_G0034114.1 mouse_genomes_project 9 89990193 90108553 + MGP_CASTEiJ_P0093752 Rasgrf1 protein_coding protein_coding MGP_CASTEiJ_T0093753.1 MGP_CASTEiJ_G0034114.1 mouse_genomes_project 9 89990196 90008293 + Rasgrf1 protein_coding retained_intron MGP_CASTEiJ_T0093272.1 MGP_CASTEiJ_G0034015.1 mouse_genomes_project 9 71693423 71846920 - MGP_CASTEiJ_P0093272 Cgnl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093273.1 MGP_CASTEiJ_G0034015.1 mouse_genomes_project 9 71693430 71846848 - MGP_CASTEiJ_P0093273 Cgnl1 protein_coding protein_coding MGP_CASTEiJ_T0093274.1 MGP_CASTEiJ_G0034015.1 mouse_genomes_project 9 71693430 71846848 - MGP_CASTEiJ_P0093274 Cgnl1 protein_coding protein_coding MGP_CASTEiJ_T0093275.1 MGP_CASTEiJ_G0034015.1 mouse_genomes_project 9 71695782 71698025 - Cgnl1 protein_coding retained_intron MGP_CASTEiJ_T0093276.1 MGP_CASTEiJ_G0034015.1 mouse_genomes_project 9 71696135 71846806 - MGP_CASTEiJ_P0093276 Cgnl1 protein_coding protein_coding MGP_CASTEiJ_T0093277.1 MGP_CASTEiJ_G0034015.1 mouse_genomes_project 9 71697253 71698246 - Cgnl1 protein_coding retained_intron MGP_CASTEiJ_T0093278.1 MGP_CASTEiJ_G0034015.1 mouse_genomes_project 9 71699527 71717481 - Cgnl1 protein_coding processed_transcript MGP_CASTEiJ_T0009104.1 MGP_CASTEiJ_G0007330.1 mouse_genomes_project 9 111326616 111333663 - Gm42775 lincRNA lincRNA MGP_CASTEiJ_T0015462.1 MGP_CASTEiJ_G0013625.1 mouse_genomes_project 9 74771181 74771371 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091257.1 MGP_CASTEiJ_G0033334.1 mouse_genomes_project 9 4533119 4544452 + MGP_CASTEiJ_P0091257 Mmp10 protein_coding protein_coding MGP_CASTEiJ_T0017835.1 MGP_CASTEiJ_G0015076.1 mouse_genomes_project 9 112078955 112097146 + Gm10030 processed_transcript antisense MGP_CASTEiJ_T0017836.1 MGP_CASTEiJ_G0015076.1 mouse_genomes_project 9 112089462 112095642 + Gm10030 processed_transcript retained_intron MGP_CASTEiJ_T0017837.1 MGP_CASTEiJ_G0015076.1 mouse_genomes_project 9 112093927 112095947 + Gm10030 processed_transcript processed_transcript MGP_CASTEiJ_T0093513.1 MGP_CASTEiJ_G0034063.1 mouse_genomes_project 9 78585014 78600607 + MGP_CASTEiJ_P0093513 Gsta4 protein_coding protein_coding MGP_CASTEiJ_T0093707.1 MGP_CASTEiJ_G0034103.1 mouse_genomes_project 9 87910723 87978958 - MGP_CASTEiJ_P0093707 Cep162 protein_coding protein_coding MGP_CASTEiJ_T0093708.1 MGP_CASTEiJ_G0034103.1 mouse_genomes_project 9 87925208 87930509 - Cep162 protein_coding processed_transcript MGP_CASTEiJ_T0093709.1 MGP_CASTEiJ_G0034103.1 mouse_genomes_project 9 87947461 87950484 - Cep162 protein_coding retained_intron MGP_CASTEiJ_T0093710.1 MGP_CASTEiJ_G0034103.1 mouse_genomes_project 9 87948219 87978710 - Cep162 protein_coding retained_intron MGP_CASTEiJ_T0017823.1 MGP_CASTEiJ_G0015071.1 mouse_genomes_project 9 102277319 102366166 - Gm29521 processed_transcript lincRNA MGP_CASTEiJ_T0017824.1 MGP_CASTEiJ_G0015071.1 mouse_genomes_project 9 102362997 102366208 - Gm29521 processed_transcript retained_intron MGP_CASTEiJ_T0092019.1 MGP_CASTEiJ_G0033628.1 mouse_genomes_project 9 37084041 37084897 - MGP_CASTEiJ_P0092019 Olfr937 protein_coding protein_coding MGP_CASTEiJ_T0005396.1 MGP_CASTEiJ_G0004561.1 mouse_genomes_project 9 108834032 108835351 - Gm37974 antisense antisense MGP_CASTEiJ_T0015428.1 MGP_CASTEiJ_G0013591.1 mouse_genomes_project 9 33494042 33494331 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0008990.1 MGP_CASTEiJ_G0007241.1 mouse_genomes_project 9 33430378 33432334 - lincRNA lincRNA MGP_CASTEiJ_T0100125.1 MGP_CASTEiJ_G0037038.1 mouse_genomes_project 9 49726543 49726649 + Gm25558 snRNA snRNA MGP_CASTEiJ_T0002318.1 MGP_CASTEiJ_G0002236.1 mouse_genomes_project 9 77706137 77706677 + TEC TEC MGP_CASTEiJ_T0015455.1 MGP_CASTEiJ_G0013618.1 mouse_genomes_project 9 72389013 72389449 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010796.1 MGP_CASTEiJ_G0008984.1 mouse_genomes_project 9 122844598 122844660 + Mir7090 miRNA miRNA MGP_CASTEiJ_T0094547.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108621485 108659151 - MGP_CASTEiJ_P0094547 Rbm5 protein_coding protein_coding MGP_CASTEiJ_T0094548.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108621605 108659136 - Rbm5 protein_coding retained_intron MGP_CASTEiJ_T0094549.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108621606 108645673 - Rbm5 protein_coding retained_intron MGP_CASTEiJ_T0094550.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108621610 108659142 - MGP_CASTEiJ_P0094550 Rbm5 protein_coding protein_coding MGP_CASTEiJ_T0094551.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108621610 108659135 - MGP_CASTEiJ_P0094551 Rbm5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094552.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108623081 108626752 - MGP_CASTEiJ_P0094552 Rbm5 protein_coding protein_coding MGP_CASTEiJ_T0094553.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108624437 108626700 - Rbm5 protein_coding retained_intron MGP_CASTEiJ_T0094554.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108626734 108632485 - Rbm5 protein_coding retained_intron MGP_CASTEiJ_T0094555.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108627659 108632374 - Rbm5 protein_coding retained_intron MGP_CASTEiJ_T0094556.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108628509 108659106 - MGP_CASTEiJ_P0094556 Rbm5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094557.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108628610 108634369 - MGP_CASTEiJ_P0094557 Rbm5 protein_coding protein_coding MGP_CASTEiJ_T0094558.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108632755 108634421 - Rbm5 protein_coding retained_intron MGP_CASTEiJ_T0094559.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108632962 108639114 - Rbm5 protein_coding retained_intron MGP_CASTEiJ_T0094560.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108634339 108639766 - Rbm5 protein_coding retained_intron MGP_CASTEiJ_T0094561.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108634368 108655779 - MGP_CASTEiJ_P0094561 Rbm5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094562.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108639118 108659127 - MGP_CASTEiJ_P0094562 Rbm5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094563.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108639122 108642360 - Rbm5 protein_coding retained_intron MGP_CASTEiJ_T0094564.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108639146 108658650 - MGP_CASTEiJ_P0094564 Rbm5 protein_coding protein_coding MGP_CASTEiJ_T0094565.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108643543 108659114 - Rbm5 protein_coding retained_intron MGP_CASTEiJ_T0094566.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108645428 108659114 - MGP_CASTEiJ_P0094566 Rbm5 protein_coding protein_coding MGP_CASTEiJ_T0094567.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108645493 108659100 - MGP_CASTEiJ_P0094567 Rbm5 protein_coding protein_coding MGP_CASTEiJ_T0094568.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108653097 108659144 - Rbm5 protein_coding retained_intron MGP_CASTEiJ_T0094569.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108654774 108659141 - Rbm5 protein_coding retained_intron MGP_CASTEiJ_T0094570.1 MGP_CASTEiJ_G0034263.1 mouse_genomes_project 9 108657338 108659114 - Rbm5 protein_coding retained_intron MGP_CASTEiJ_T0015541.1 MGP_CASTEiJ_G0013704.1 mouse_genomes_project 9 109259390 109259754 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010777.1 MGP_CASTEiJ_G0008965.1 mouse_genomes_project 9 105712691 105712795 + Gm23391 miRNA miRNA MGP_CASTEiJ_T0093575.1 MGP_CASTEiJ_G0034080.1 mouse_genomes_project 9 82156934 82162464 - MGP_CASTEiJ_P0093575 Htr1b protein_coding protein_coding MGP_CASTEiJ_T0093576.1 MGP_CASTEiJ_G0034080.1 mouse_genomes_project 9 82159978 82161251 - MGP_CASTEiJ_P0093576 Htr1b protein_coding protein_coding MGP_CASTEiJ_T0093112.1 MGP_CASTEiJ_G0033978.1 mouse_genomes_project 9 65952846 66078386 + MGP_CASTEiJ_P0093112 Dapk2 protein_coding protein_coding MGP_CASTEiJ_T0093113.1 MGP_CASTEiJ_G0033978.1 mouse_genomes_project 9 65952858 66023966 + Dapk2 protein_coding retained_intron MGP_CASTEiJ_T0093114.1 MGP_CASTEiJ_G0033978.1 mouse_genomes_project 9 66022632 66074086 + MGP_CASTEiJ_P0093114 Dapk2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093115.1 MGP_CASTEiJ_G0033978.1 mouse_genomes_project 9 66071779 66077859 + Dapk2 protein_coding retained_intron MGP_CASTEiJ_T0094143.1 MGP_CASTEiJ_G0034196.1 mouse_genomes_project 9 104084286 104308856 - MGP_CASTEiJ_P0094143 Tmem108 protein_coding protein_coding MGP_CASTEiJ_T0094144.1 MGP_CASTEiJ_G0034196.1 mouse_genomes_project 9 104085136 104379070 - MGP_CASTEiJ_P0094144 Tmem108 protein_coding protein_coding MGP_CASTEiJ_T0094145.1 MGP_CASTEiJ_G0034196.1 mouse_genomes_project 9 104085794 104379027 - MGP_CASTEiJ_P0094145 Tmem108 protein_coding protein_coding MGP_CASTEiJ_T0094146.1 MGP_CASTEiJ_G0034196.1 mouse_genomes_project 9 104085797 104094993 - Tmem108 protein_coding retained_intron MGP_CASTEiJ_T0094147.1 MGP_CASTEiJ_G0034196.1 mouse_genomes_project 9 104369481 104379023 - Tmem108 protein_coding retained_intron MGP_CASTEiJ_T0098675.1 MGP_CASTEiJ_G0035606.1 mouse_genomes_project 9 65609185 65609298 + n-R5s85 rRNA rRNA MGP_CASTEiJ_T0095202.1 MGP_CASTEiJ_G0034364.1 mouse_genomes_project 9 112565292 112616770 + MGP_CASTEiJ_P0095202 Dclk3 protein_coding protein_coding MGP_CASTEiJ_T0009085.1 MGP_CASTEiJ_G0007316.1 mouse_genomes_project 9 102866764 102875563 + Gm26846 lincRNA lincRNA MGP_CASTEiJ_T0002353.1 MGP_CASTEiJ_G0002270.1 mouse_genomes_project 9 101171041 101172015 + TEC TEC MGP_CASTEiJ_T0093242.1 MGP_CASTEiJ_G0034007.1 mouse_genomes_project 9 70700205 70701816 + MGP_CASTEiJ_P0093242 Gm10642 protein_coding protein_coding MGP_CASTEiJ_T0100114.1 MGP_CASTEiJ_G0037027.1 mouse_genomes_project 9 30268588 30268695 - Gm22060 snRNA snRNA MGP_CASTEiJ_T0015490.1 MGP_CASTEiJ_G0013653.1 mouse_genomes_project 9 88483834 88484336 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011414.1 MGP_CASTEiJ_G0009602.1 mouse_genomes_project 9 103549049 103549371 + Gm25842 misc_RNA misc_RNA MGP_CASTEiJ_T0091215.1 MGP_CASTEiJ_G0033319.1 mouse_genomes_project 9 1270043 1295444 + MGP_CASTEiJ_P0091215 Kbtbd3 protein_coding protein_coding MGP_CASTEiJ_T0017838.1 MGP_CASTEiJ_G0015077.1 mouse_genomes_project 9 115479647 115738151 + processed_transcript processed_transcript MGP_CASTEiJ_T0017839.1 MGP_CASTEiJ_G0015077.1 mouse_genomes_project 9 115479675 115737368 + processed_transcript processed_transcript MGP_CASTEiJ_T0100122.1 MGP_CASTEiJ_G0037035.1 mouse_genomes_project 9 44428308 44428407 - Gm24646 snRNA snRNA MGP_CASTEiJ_T0091718.1 MGP_CASTEiJ_G0033507.1 mouse_genomes_project 9 24539754 24554748 - Acad8 protein_coding retained_intron MGP_CASTEiJ_T0091719.1 MGP_CASTEiJ_G0033507.1 mouse_genomes_project 9 24539754 24563234 - MGP_CASTEiJ_P0091719 Acad8 protein_coding protein_coding MGP_CASTEiJ_T0091720.1 MGP_CASTEiJ_G0033507.1 mouse_genomes_project 9 24539763 24563218 - MGP_CASTEiJ_P0091720 Acad8 protein_coding protein_coding MGP_CASTEiJ_T0091721.1 MGP_CASTEiJ_G0033507.1 mouse_genomes_project 9 24540994 24543577 - Acad8 protein_coding retained_intron MGP_CASTEiJ_T0091722.1 MGP_CASTEiJ_G0033507.1 mouse_genomes_project 9 24544820 24563177 - MGP_CASTEiJ_P0091722 Acad8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091723.1 MGP_CASTEiJ_G0033507.1 mouse_genomes_project 9 24544881 24563175 - MGP_CASTEiJ_P0091723 Acad8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091724.1 MGP_CASTEiJ_G0033507.1 mouse_genomes_project 9 24554717 24563174 - Acad8 protein_coding retained_intron MGP_CASTEiJ_T0015512.1 MGP_CASTEiJ_G0013675.1 mouse_genomes_project 9 95878053 95878646 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091540.1 MGP_CASTEiJ_G0033437.1 mouse_genomes_project 9 18299526 18312750 - MGP_CASTEiJ_P0091540 S1pr2 protein_coding protein_coding MGP_CASTEiJ_T0101673.1 MGP_CASTEiJ_G0038505.1 mouse_genomes_project 9 78811605 78813426 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101674.1 MGP_CASTEiJ_G0038505.1 mouse_genomes_project 9 78811922 78814017 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101675.1 MGP_CASTEiJ_G0038505.1 mouse_genomes_project 9 78812473 78817030 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0093791.1 MGP_CASTEiJ_G0034120.1 mouse_genomes_project 9 91466739 91485167 + MGP_CASTEiJ_P0093791 Zic4 protein_coding protein_coding MGP_CASTEiJ_T0093792.1 MGP_CASTEiJ_G0034120.1 mouse_genomes_project 9 91474682 91475454 + Zic4 protein_coding processed_transcript MGP_CASTEiJ_T0093793.1 MGP_CASTEiJ_G0034120.1 mouse_genomes_project 9 91475132 91485509 + MGP_CASTEiJ_P0093793 Zic4 protein_coding protein_coding MGP_CASTEiJ_T0093794.1 MGP_CASTEiJ_G0034120.1 mouse_genomes_project 9 91475214 91487233 + Zic4 protein_coding retained_intron MGP_CASTEiJ_T0093795.1 MGP_CASTEiJ_G0034120.1 mouse_genomes_project 9 91475290 91494067 + MGP_CASTEiJ_P0093795 Zic4 protein_coding protein_coding MGP_CASTEiJ_T0093796.1 MGP_CASTEiJ_G0034120.1 mouse_genomes_project 9 91475828 91485792 + Zic4 protein_coding retained_intron MGP_CASTEiJ_T0093797.1 MGP_CASTEiJ_G0034120.1 mouse_genomes_project 9 91477334 91485441 + MGP_CASTEiJ_P0093797 Zic4 protein_coding protein_coding MGP_CASTEiJ_T0093798.1 MGP_CASTEiJ_G0034120.1 mouse_genomes_project 9 91477543 91493232 + MGP_CASTEiJ_P0093798 Zic4 protein_coding protein_coding MGP_CASTEiJ_T0093799.1 MGP_CASTEiJ_G0034120.1 mouse_genomes_project 9 91477680 91480253 + Zic4 protein_coding retained_intron MGP_CASTEiJ_T0093800.1 MGP_CASTEiJ_G0034120.1 mouse_genomes_project 9 91484448 91490654 + Zic4 protein_coding retained_intron MGP_CASTEiJ_T0093801.1 MGP_CASTEiJ_G0034120.1 mouse_genomes_project 9 91484893 91495612 + MGP_CASTEiJ_P0093801 Zic4 protein_coding protein_coding MGP_CASTEiJ_T0093802.1 MGP_CASTEiJ_G0034120.1 mouse_genomes_project 9 91488664 91494318 + Zic4 protein_coding processed_transcript MGP_CASTEiJ_T0095238.1 MGP_CASTEiJ_G0034367.1 mouse_genomes_project 9 114726233 114737956 - MGP_CASTEiJ_P0095238 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0017782.1 MGP_CASTEiJ_G0015055.1 mouse_genomes_project 9 62985948 63086560 + Gm16759 processed_transcript lincRNA MGP_CASTEiJ_T0017783.1 MGP_CASTEiJ_G0015055.1 mouse_genomes_project 9 62986721 63163512 + Gm16759 processed_transcript lincRNA MGP_CASTEiJ_T0017784.1 MGP_CASTEiJ_G0015055.1 mouse_genomes_project 9 62986728 63012862 + Gm16759 processed_transcript lincRNA MGP_CASTEiJ_T0017785.1 MGP_CASTEiJ_G0015055.1 mouse_genomes_project 9 63127284 63161832 + Gm16759 processed_transcript processed_transcript MGP_CASTEiJ_T0095484.1 MGP_CASTEiJ_G0034441.1 mouse_genomes_project 9 123761519 123770920 - MGP_CASTEiJ_P0095484 Higd1a protein_coding protein_coding MGP_CASTEiJ_T0092416.1 MGP_CASTEiJ_G0033777.1 mouse_genomes_project 9 48180657 48195530 - MGP_CASTEiJ_P0092416 Ankk1 protein_coding protein_coding MGP_CASTEiJ_T0095004.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111105630 111144366 - MGP_CASTEiJ_P0095004 Dhx30 protein_coding protein_coding MGP_CASTEiJ_T0095005.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111105632 111144748 - MGP_CASTEiJ_P0095005 Dhx30 protein_coding protein_coding MGP_CASTEiJ_T0095006.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111105632 111144352 - MGP_CASTEiJ_P0095006 Dhx30 protein_coding protein_coding MGP_CASTEiJ_T0095007.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111105632 111144341 - MGP_CASTEiJ_P0095007 Dhx30 protein_coding protein_coding MGP_CASTEiJ_T0095008.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111105632 111127529 - MGP_CASTEiJ_P0095008 Dhx30 protein_coding protein_coding MGP_CASTEiJ_T0095009.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111105633 111136042 - Dhx30 protein_coding retained_intron MGP_CASTEiJ_T0095010.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111105633 111106304 - MGP_CASTEiJ_P0095010 Dhx30 protein_coding protein_coding MGP_CASTEiJ_T0095011.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111105633 111106363 - MGP_CASTEiJ_P0095011 Dhx30 protein_coding protein_coding MGP_CASTEiJ_T0095012.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111105633 111144356 - MGP_CASTEiJ_P0095012 Dhx30 protein_coding protein_coding MGP_CASTEiJ_T0095013.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111105634 111144330 - MGP_CASTEiJ_P0095013 Dhx30 protein_coding protein_coding MGP_CASTEiJ_T0095014.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111105635 111144254 - MGP_CASTEiJ_P0095014 Dhx30 protein_coding protein_coding MGP_CASTEiJ_T0095015.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111105830 111106828 - MGP_CASTEiJ_P0095015 Dhx30 protein_coding protein_coding MGP_CASTEiJ_T0095016.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111107631 111108767 - Dhx30 protein_coding retained_intron MGP_CASTEiJ_T0095017.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111109255 111112800 - Dhx30 protein_coding retained_intron MGP_CASTEiJ_T0095018.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111111135 111136518 - Dhx30 protein_coding retained_intron MGP_CASTEiJ_T0095019.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111114287 111127481 - MGP_CASTEiJ_P0095019 Dhx30 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095020.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111114395 111143703 - MGP_CASTEiJ_P0095020 Dhx30 protein_coding protein_coding MGP_CASTEiJ_T0095021.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111114437 111127480 - MGP_CASTEiJ_P0095021 Dhx30 protein_coding protein_coding MGP_CASTEiJ_T0095022.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111125178 111142248 - MGP_CASTEiJ_P0095022 Dhx30 protein_coding protein_coding MGP_CASTEiJ_T0095023.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111125266 111144006 - MGP_CASTEiJ_P0095023 Dhx30 protein_coding protein_coding MGP_CASTEiJ_T0095024.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111135161 111144338 - MGP_CASTEiJ_P0095024 Dhx30 protein_coding protein_coding MGP_CASTEiJ_T0095025.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111138745 111144350 - Dhx30 protein_coding processed_transcript MGP_CASTEiJ_T0095026.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111141117 111144293 - Dhx30 protein_coding retained_intron MGP_CASTEiJ_T0095027.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111142055 111144551 - Dhx30 protein_coding processed_transcript MGP_CASTEiJ_T0095028.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111142363 111144027 - Dhx30 protein_coding processed_transcript MGP_CASTEiJ_T0095029.1 MGP_CASTEiJ_G0034331.1 mouse_genomes_project 9 111142410 111144304 - Dhx30 protein_coding processed_transcript MGP_CASTEiJ_T0094191.1 MGP_CASTEiJ_G0034204.1 mouse_genomes_project 9 105222656 105582082 + MGP_CASTEiJ_P0094191 Cpne4 protein_coding protein_coding MGP_CASTEiJ_T0094192.1 MGP_CASTEiJ_G0034204.1 mouse_genomes_project 9 105241102 105581834 + MGP_CASTEiJ_P0094192 Cpne4 protein_coding protein_coding MGP_CASTEiJ_T0094193.1 MGP_CASTEiJ_G0034204.1 mouse_genomes_project 9 105243870 105756440 + MGP_CASTEiJ_P0094193 Cpne4 protein_coding protein_coding MGP_CASTEiJ_T0094194.1 MGP_CASTEiJ_G0034204.1 mouse_genomes_project 9 105244174 105756440 + MGP_CASTEiJ_P0094194 Cpne4 protein_coding protein_coding MGP_CASTEiJ_T0092711.1 MGP_CASTEiJ_G0033868.1 mouse_genomes_project 9 56617030 56646618 - MGP_CASTEiJ_P0092711 Ppcdc protein_coding protein_coding MGP_CASTEiJ_T0092583.1 MGP_CASTEiJ_G0033831.1 mouse_genomes_project 9 53575761 53597265 + MGP_CASTEiJ_P0092583 Idh3a protein_coding protein_coding MGP_CASTEiJ_T0002385.1 MGP_CASTEiJ_G0002302.1 mouse_genomes_project 9 109470499 109473838 + TEC TEC MGP_CASTEiJ_T0015434.1 MGP_CASTEiJ_G0013597.1 mouse_genomes_project 9 39935602 39936582 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002401.1 MGP_CASTEiJ_G0002318.1 mouse_genomes_project 9 123654317 123657627 - TEC TEC MGP_CASTEiJ_T0092375.1 MGP_CASTEiJ_G0033760.1 mouse_genomes_project 9 45629217 45642568 + MGP_CASTEiJ_P0092375 Gm4791 protein_coding protein_coding MGP_CASTEiJ_T0091531.1 MGP_CASTEiJ_G0033433.1 mouse_genomes_project 9 18201622 18207504 - MGP_CASTEiJ_P0091531 Angptl6 protein_coding protein_coding MGP_CASTEiJ_T0094013.1 MGP_CASTEiJ_G0034169.1 mouse_genomes_project 9 100101684 100128692 - MGP_CASTEiJ_P0094013 Cldn18 protein_coding protein_coding MGP_CASTEiJ_T0094014.1 MGP_CASTEiJ_G0034169.1 mouse_genomes_project 9 100104054 100135862 - MGP_CASTEiJ_P0094014 Cldn18 protein_coding protein_coding MGP_CASTEiJ_T0094015.1 MGP_CASTEiJ_G0034169.1 mouse_genomes_project 9 100104415 100128638 - MGP_CASTEiJ_P0094015 Cldn18 protein_coding protein_coding MGP_CASTEiJ_T0094016.1 MGP_CASTEiJ_G0034169.1 mouse_genomes_project 9 100104958 100135862 - MGP_CASTEiJ_P0094016 Cldn18 protein_coding protein_coding MGP_CASTEiJ_T0091389.1 MGP_CASTEiJ_G0033374.1 mouse_genomes_project 9 12402435 12409019 + MGP_CASTEiJ_P0091389 Taf1d protein_coding protein_coding MGP_CASTEiJ_T0091390.1 MGP_CASTEiJ_G0033374.1 mouse_genomes_project 9 12402797 12408627 + MGP_CASTEiJ_P0091390 Taf1d protein_coding unknown_likely_coding MGP_CASTEiJ_T0093829.1 MGP_CASTEiJ_G0034130.1 mouse_genomes_project 9 95638189 95697026 - MGP_CASTEiJ_P0093829 U2surp protein_coding protein_coding MGP_CASTEiJ_T0093830.1 MGP_CASTEiJ_G0034130.1 mouse_genomes_project 9 95642259 95697128 - MGP_CASTEiJ_P0093830 U2surp protein_coding protein_coding MGP_CASTEiJ_T0093831.1 MGP_CASTEiJ_G0034130.1 mouse_genomes_project 9 95642635 95697127 - MGP_CASTEiJ_P0093831 U2surp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093832.1 MGP_CASTEiJ_G0034130.1 mouse_genomes_project 9 95642686 95696993 - MGP_CASTEiJ_P0093832 U2surp protein_coding unknown_likely_coding MGP_CASTEiJ_T0093833.1 MGP_CASTEiJ_G0034130.1 mouse_genomes_project 9 95660126 95664343 - U2surp protein_coding retained_intron MGP_CASTEiJ_T0093834.1 MGP_CASTEiJ_G0034130.1 mouse_genomes_project 9 95676506 95696991 - MGP_CASTEiJ_P0093834 U2surp protein_coding protein_coding MGP_CASTEiJ_T0093835.1 MGP_CASTEiJ_G0034130.1 mouse_genomes_project 9 95677979 95696988 - MGP_CASTEiJ_P0093835 U2surp protein_coding protein_coding MGP_CASTEiJ_T0093836.1 MGP_CASTEiJ_G0034130.1 mouse_genomes_project 9 95687150 95697017 - U2surp protein_coding retained_intron MGP_CASTEiJ_T0093837.1 MGP_CASTEiJ_G0034130.1 mouse_genomes_project 9 95694148 95697011 - U2surp protein_coding retained_intron MGP_CASTEiJ_T0092127.1 MGP_CASTEiJ_G0033684.1 mouse_genomes_project 9 40854106 41291160 - MGP_CASTEiJ_P0092127 Grik4 protein_coding protein_coding MGP_CASTEiJ_T0092128.1 MGP_CASTEiJ_G0033684.1 mouse_genomes_project 9 40856304 41154789 - MGP_CASTEiJ_P0092128 Grik4 protein_coding protein_coding MGP_CASTEiJ_T0091660.1 MGP_CASTEiJ_G0033487.1 mouse_genomes_project 9 19697819 19710248 - MGP_CASTEiJ_P0091660 Zfp599 protein_coding protein_coding MGP_CASTEiJ_T0010774.1 MGP_CASTEiJ_G0008962.1 mouse_genomes_project 9 94922440 94922502 + Mir7656 miRNA miRNA MGP_CASTEiJ_T0093356.1 MGP_CASTEiJ_G0034023.1 mouse_genomes_project 9 73089705 73118686 + MGP_CASTEiJ_P0093356 Pygo1 protein_coding protein_coding MGP_CASTEiJ_T0092940.1 MGP_CASTEiJ_G0033927.1 mouse_genomes_project 9 62344820 62369477 - MGP_CASTEiJ_P0092940 Fem1b protein_coding protein_coding MGP_CASTEiJ_T0094066.1 MGP_CASTEiJ_G0034180.1 mouse_genomes_project 9 102448125 102452859 + MGP_CASTEiJ_P0094066 9630041A04Rik protein_coding protein_coding MGP_CASTEiJ_T0093052.1 MGP_CASTEiJ_G0033965.1 mouse_genomes_project 9 65241870 65265337 - MGP_CASTEiJ_P0093052 Ankdd1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0093053.1 MGP_CASTEiJ_G0033965.1 mouse_genomes_project 9 65246533 65262161 - MGP_CASTEiJ_P0093053 Ankdd1a protein_coding protein_coding MGP_CASTEiJ_T0015477.1 MGP_CASTEiJ_G0013640.1 mouse_genomes_project 9 80554380 80554708 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092867.1 MGP_CASTEiJ_G0033913.1 mouse_genomes_project 9 59356710 59911887 - MGP_CASTEiJ_P0092867 Thsd4 protein_coding protein_coding MGP_CASTEiJ_T0092868.1 MGP_CASTEiJ_G0033913.1 mouse_genomes_project 9 59356710 59926142 - MGP_CASTEiJ_P0092868 Thsd4 protein_coding protein_coding MGP_CASTEiJ_T0092869.1 MGP_CASTEiJ_G0033913.1 mouse_genomes_project 9 59359533 59534427 - MGP_CASTEiJ_P0092869 Thsd4 protein_coding protein_coding MGP_CASTEiJ_T0092870.1 MGP_CASTEiJ_G0033913.1 mouse_genomes_project 9 59385460 59394082 - Thsd4 protein_coding retained_intron MGP_CASTEiJ_T0092871.1 MGP_CASTEiJ_G0033913.1 mouse_genomes_project 9 59841256 59937013 - MGP_CASTEiJ_P0092871 Thsd4 protein_coding protein_coding MGP_CASTEiJ_T0092872.1 MGP_CASTEiJ_G0033913.1 mouse_genomes_project 9 59924984 59926114 - Thsd4 protein_coding processed_transcript MGP_CASTEiJ_T0005289.1 MGP_CASTEiJ_G0004491.1 mouse_genomes_project 9 40326279 40339345 + Gm16214 antisense antisense MGP_CASTEiJ_T0101401.1 MGP_CASTEiJ_G0038314.1 mouse_genomes_project 9 88718699 88718829 - Gm23176 snoRNA snoRNA MGP_CASTEiJ_T0015458.1 MGP_CASTEiJ_G0013621.1 mouse_genomes_project 9 72981869 72982176 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005364.1 MGP_CASTEiJ_G0004537.1 mouse_genomes_project 9 97398150 97401359 + Gm16185 antisense antisense MGP_CASTEiJ_T0092885.1 MGP_CASTEiJ_G0033916.1 mouse_genomes_project 9 60214580 60300644 + MGP_CASTEiJ_P0092885 Uaca protein_coding protein_coding MGP_CASTEiJ_T0092886.1 MGP_CASTEiJ_G0033916.1 mouse_genomes_project 9 60214641 60300638 + MGP_CASTEiJ_P0092886 Uaca protein_coding unknown_likely_coding MGP_CASTEiJ_T0091543.1 MGP_CASTEiJ_G0033440.1 mouse_genomes_project 9 18368333 18369492 + MGP_CASTEiJ_P0091543 Icam4 protein_coding protein_coding MGP_CASTEiJ_T0092134.1 MGP_CASTEiJ_G0033688.1 mouse_genomes_project 9 41591958 41610520 - MGP_CASTEiJ_P0092134 Oaf protein_coding protein_coding MGP_CASTEiJ_T0009060.1 MGP_CASTEiJ_G0007296.1 mouse_genomes_project 9 90178806 90180596 + lincRNA lincRNA MGP_CASTEiJ_T0100128.1 MGP_CASTEiJ_G0037041.1 mouse_genomes_project 9 62603414 62603572 + Gm24526 snRNA snRNA MGP_CASTEiJ_T0091933.1 MGP_CASTEiJ_G0033567.1 mouse_genomes_project 9 35328122 35340213 + Robo4 protein_coding retained_intron MGP_CASTEiJ_T0091934.1 MGP_CASTEiJ_G0033567.1 mouse_genomes_project 9 35328122 35340217 + MGP_CASTEiJ_P0091934 Robo4 protein_coding protein_coding MGP_CASTEiJ_T0091935.1 MGP_CASTEiJ_G0033567.1 mouse_genomes_project 9 35328258 35340215 + MGP_CASTEiJ_P0091935 Robo4 protein_coding protein_coding MGP_CASTEiJ_T0091936.1 MGP_CASTEiJ_G0033567.1 mouse_genomes_project 9 35328271 35340216 + MGP_CASTEiJ_P0091936 Robo4 protein_coding protein_coding MGP_CASTEiJ_T0091725.1 MGP_CASTEiJ_G0033508.1 mouse_genomes_project 9 24563344 24573729 + MGP_CASTEiJ_P0091725 Thyn1 protein_coding protein_coding MGP_CASTEiJ_T0091726.1 MGP_CASTEiJ_G0033508.1 mouse_genomes_project 9 24563677 24573603 + MGP_CASTEiJ_P0091726 Thyn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0095376.1 MGP_CASTEiJ_G0034408.1 mouse_genomes_project 9 121189914 121214172 + MGP_CASTEiJ_P0095376 Exog protein_coding protein_coding MGP_CASTEiJ_T0095377.1 MGP_CASTEiJ_G0034408.1 mouse_genomes_project 9 121189942 121212885 + MGP_CASTEiJ_P0095377 Exog protein_coding protein_coding MGP_CASTEiJ_T0095378.1 MGP_CASTEiJ_G0034408.1 mouse_genomes_project 9 121190113 121211556 + MGP_CASTEiJ_P0095378 Exog protein_coding unknown_likely_coding MGP_CASTEiJ_T0100136.1 MGP_CASTEiJ_G0037049.1 mouse_genomes_project 9 66980184 66980332 + Gm22145 snRNA snRNA MGP_CASTEiJ_T0010749.1 MGP_CASTEiJ_G0008937.1 mouse_genomes_project 9 43788671 43788736 - Mir7086 miRNA miRNA MGP_CASTEiJ_T0095331.1 MGP_CASTEiJ_G0034397.1 mouse_genomes_project 9 120731187 120751604 + Vill protein_coding retained_intron MGP_CASTEiJ_T0095332.1 MGP_CASTEiJ_G0034397.1 mouse_genomes_project 9 120731187 120736291 + Vill protein_coding retained_intron MGP_CASTEiJ_T0095333.1 MGP_CASTEiJ_G0034397.1 mouse_genomes_project 9 120731187 120751598 + MGP_CASTEiJ_P0095333 Vill protein_coding protein_coding MGP_CASTEiJ_T0095334.1 MGP_CASTEiJ_G0034397.1 mouse_genomes_project 9 120731211 120751405 + MGP_CASTEiJ_P0095334 Vill protein_coding protein_coding MGP_CASTEiJ_T0095335.1 MGP_CASTEiJ_G0034397.1 mouse_genomes_project 9 120731274 120736662 + MGP_CASTEiJ_P0095335 Vill protein_coding protein_coding MGP_CASTEiJ_T0095336.1 MGP_CASTEiJ_G0034397.1 mouse_genomes_project 9 120741652 120751405 + MGP_CASTEiJ_P0095336 Vill protein_coding protein_coding MGP_CASTEiJ_T0095337.1 MGP_CASTEiJ_G0034397.1 mouse_genomes_project 9 120741658 120751416 + MGP_CASTEiJ_P0095337 Vill protein_coding protein_coding MGP_CASTEiJ_T0095338.1 MGP_CASTEiJ_G0034397.1 mouse_genomes_project 9 120741659 120748247 + MGP_CASTEiJ_P0095338 Vill protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095339.1 MGP_CASTEiJ_G0034397.1 mouse_genomes_project 9 120741662 120744997 + MGP_CASTEiJ_P0095339 Vill protein_coding protein_coding MGP_CASTEiJ_T0095340.1 MGP_CASTEiJ_G0034397.1 mouse_genomes_project 9 120741686 120743548 + Vill protein_coding processed_transcript MGP_CASTEiJ_T0093960.1 MGP_CASTEiJ_G0034154.1 mouse_genomes_project 9 99215706 99216608 + MGP_CASTEiJ_P0093960 protein_coding protein_coding MGP_CASTEiJ_T0092066.1 MGP_CASTEiJ_G0033669.1 mouse_genomes_project 9 38367060 38623674 - MGP_CASTEiJ_P0092066 Gramd1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0092076.1 MGP_CASTEiJ_G0033669.1 mouse_genomes_project 9 38461732 38514254 - MGP_CASTEiJ_P0092076 Gramd1b protein_coding protein_coding MGP_CASTEiJ_T0092077.1 MGP_CASTEiJ_G0033669.1 mouse_genomes_project 9 38461738 38703914 - MGP_CASTEiJ_P0092077 Gramd1b protein_coding protein_coding MGP_CASTEiJ_T0092078.1 MGP_CASTEiJ_G0033669.1 mouse_genomes_project 9 38461744 38623600 - MGP_CASTEiJ_P0092078 Gramd1b protein_coding protein_coding MGP_CASTEiJ_T0092079.1 MGP_CASTEiJ_G0033669.1 mouse_genomes_project 9 38466160 38559979 - MGP_CASTEiJ_P0092079 Gramd1b protein_coding protein_coding MGP_CASTEiJ_T0092080.1 MGP_CASTEiJ_G0033669.1 mouse_genomes_project 9 38466191 38623694 - MGP_CASTEiJ_P0092080 Gramd1b protein_coding protein_coding MGP_CASTEiJ_T0092081.1 MGP_CASTEiJ_G0033669.1 mouse_genomes_project 9 38466276 38513865 - MGP_CASTEiJ_P0092081 Gramd1b protein_coding protein_coding MGP_CASTEiJ_T0092082.1 MGP_CASTEiJ_G0033669.1 mouse_genomes_project 9 38468139 38475110 - Gramd1b protein_coding retained_intron MGP_CASTEiJ_T0092083.1 MGP_CASTEiJ_G0033669.1 mouse_genomes_project 9 38484735 38501434 - Gramd1b protein_coding retained_intron MGP_CASTEiJ_T0092084.1 MGP_CASTEiJ_G0033669.1 mouse_genomes_project 9 38485498 38560277 - Gramd1b protein_coding processed_transcript MGP_CASTEiJ_T0092085.1 MGP_CASTEiJ_G0033669.1 mouse_genomes_project 9 38485500 38560263 - Gramd1b protein_coding processed_transcript MGP_CASTEiJ_T0092086.1 MGP_CASTEiJ_G0033669.1 mouse_genomes_project 9 38501391 38636867 - Gramd1b protein_coding processed_transcript MGP_CASTEiJ_T0092087.1 MGP_CASTEiJ_G0033669.1 mouse_genomes_project 9 38501404 38636857 - Gramd1b protein_coding processed_transcript MGP_CASTEiJ_T0092088.1 MGP_CASTEiJ_G0033669.1 mouse_genomes_project 9 38501451 38544539 - Gramd1b protein_coding processed_transcript MGP_CASTEiJ_T0093639.1 MGP_CASTEiJ_G0034090.1 mouse_genomes_project 9 85949254 86002901 - MGP_CASTEiJ_P0093639 Fam46a protein_coding unknown_likely_coding MGP_CASTEiJ_T0093640.1 MGP_CASTEiJ_G0034090.1 mouse_genomes_project 9 85994624 86003151 - MGP_CASTEiJ_P0093640 Fam46a protein_coding protein_coding MGP_CASTEiJ_T0093641.1 MGP_CASTEiJ_G0034090.1 mouse_genomes_project 9 85994624 86002927 - MGP_CASTEiJ_P0093641 Fam46a protein_coding protein_coding MGP_CASTEiJ_T0091451.1 MGP_CASTEiJ_G0033400.1 mouse_genomes_project 9 16537813 16538755 - MGP_CASTEiJ_P0091451 Olfr846 protein_coding protein_coding MGP_CASTEiJ_T0091639.1 MGP_CASTEiJ_G0033477.1 mouse_genomes_project 9 19413332 19424473 + MGP_CASTEiJ_P0091639 Prkcsh protein_coding protein_coding MGP_CASTEiJ_T0091640.1 MGP_CASTEiJ_G0033477.1 mouse_genomes_project 9 19413332 19424473 + MGP_CASTEiJ_P0091640 Prkcsh protein_coding protein_coding MGP_CASTEiJ_T0091265.1 MGP_CASTEiJ_G0033339.1 mouse_genomes_project 9 4820163 4851918 + MGP_CASTEiJ_P0091265 Tmem123 protein_coding protein_coding MGP_CASTEiJ_T0091266.1 MGP_CASTEiJ_G0033339.1 mouse_genomes_project 9 4820272 4848610 + MGP_CASTEiJ_P0091266 Tmem123 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091267.1 MGP_CASTEiJ_G0033339.1 mouse_genomes_project 9 4820288 4851913 + MGP_CASTEiJ_P0091267 Tmem123 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009112.1 MGP_CASTEiJ_G0007335.1 mouse_genomes_project 9 115468299 115479627 - lincRNA lincRNA MGP_CASTEiJ_T0092394.1 MGP_CASTEiJ_G0033766.1 mouse_genomes_project 9 47194949 47201564 - MGP_CASTEiJ_P0092394 Rbm7 protein_coding protein_coding MGP_CASTEiJ_T0095382.1 MGP_CASTEiJ_G0034410.1 mouse_genomes_project 9 121263309 121264291 + MGP_CASTEiJ_P0095382 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0095182.1 MGP_CASTEiJ_G0034361.1 mouse_genomes_project 9 112330733 112374468 - MGP_CASTEiJ_P0095182 Mlh1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095183.1 MGP_CASTEiJ_G0034361.1 mouse_genomes_project 9 112330758 112374712 - MGP_CASTEiJ_P0095183 Mlh1 protein_coding protein_coding MGP_CASTEiJ_T0095184.1 MGP_CASTEiJ_G0034361.1 mouse_genomes_project 9 112331035 112333133 - Mlh1 protein_coding retained_intron MGP_CASTEiJ_T0095185.1 MGP_CASTEiJ_G0034361.1 mouse_genomes_project 9 112332375 112333445 - Mlh1 protein_coding retained_intron MGP_CASTEiJ_T0095186.1 MGP_CASTEiJ_G0034361.1 mouse_genomes_project 9 112332393 112374522 - Mlh1 protein_coding retained_intron MGP_CASTEiJ_T0095187.1 MGP_CASTEiJ_G0034361.1 mouse_genomes_project 9 112343882 112350290 - Mlh1 protein_coding retained_intron MGP_CASTEiJ_T0095188.1 MGP_CASTEiJ_G0034361.1 mouse_genomes_project 9 112344168 112359321 - MGP_CASTEiJ_P0095188 Mlh1 protein_coding protein_coding MGP_CASTEiJ_T0095189.1 MGP_CASTEiJ_G0034361.1 mouse_genomes_project 9 112351761 112365176 - MGP_CASTEiJ_P0095189 Mlh1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095190.1 MGP_CASTEiJ_G0034361.1 mouse_genomes_project 9 112359019 112374456 - Mlh1 protein_coding processed_transcript MGP_CASTEiJ_T0091452.1 MGP_CASTEiJ_G0033401.1 mouse_genomes_project 9 16601344 16602283 + MGP_CASTEiJ_P0091452 Olfr849 protein_coding protein_coding MGP_CASTEiJ_T0009009.1 MGP_CASTEiJ_G0007255.1 mouse_genomes_project 9 47807760 47812156 - 1700042D02Rik lincRNA lincRNA MGP_CASTEiJ_T0092267.1 MGP_CASTEiJ_G0033727.1 mouse_genomes_project 9 43413446 43420962 - MGP_CASTEiJ_P0092267 Atp5l protein_coding protein_coding MGP_CASTEiJ_T0091220.1 MGP_CASTEiJ_G0033322.1 mouse_genomes_project 9 2262260 2271843 + MGP_CASTEiJ_P0091220 Casp1 protein_coding protein_coding MGP_CASTEiJ_T0091338.1 MGP_CASTEiJ_G0033356.1 mouse_genomes_project 9 10822616 10843231 + MGP_CASTEiJ_P0091338 Fam76b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091339.1 MGP_CASTEiJ_G0033356.1 mouse_genomes_project 9 10822616 10843231 + MGP_CASTEiJ_P0091339 Fam76b protein_coding protein_coding MGP_CASTEiJ_T0091340.1 MGP_CASTEiJ_G0033356.1 mouse_genomes_project 9 10822635 10827785 + Fam76b protein_coding retained_intron MGP_CASTEiJ_T0091341.1 MGP_CASTEiJ_G0033356.1 mouse_genomes_project 9 10833232 10836657 + Fam76b protein_coding retained_intron MGP_CASTEiJ_T0015525.1 MGP_CASTEiJ_G0013688.1 mouse_genomes_project 9 101085686 101086678 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0095166.1 MGP_CASTEiJ_G0034359.1 mouse_genomes_project 9 112148986 112151770 - MGP_CASTEiJ_P0095166 Ccrl2 protein_coding protein_coding MGP_CASTEiJ_T0095167.1 MGP_CASTEiJ_G0034359.1 mouse_genomes_project 9 112149332 112152019 - MGP_CASTEiJ_P0095167 Ccrl2 protein_coding protein_coding MGP_CASTEiJ_T0095168.1 MGP_CASTEiJ_G0034359.1 mouse_genomes_project 9 112150529 112151746 - MGP_CASTEiJ_P0095168 Ccrl2 protein_coding protein_coding MGP_CASTEiJ_T0002279.1 MGP_CASTEiJ_G0002197.1 mouse_genomes_project 9 30346868 30348707 - TEC TEC MGP_CASTEiJ_T0002294.1 MGP_CASTEiJ_G0002212.1 mouse_genomes_project 9 72072699 72075000 - TEC TEC MGP_CASTEiJ_T0094752.1 MGP_CASTEiJ_G0034295.1 mouse_genomes_project 9 109426533 109437609 + MGP_CASTEiJ_P0094752 Usp19 protein_coding protein_coding MGP_CASTEiJ_T0094753.1 MGP_CASTEiJ_G0034295.1 mouse_genomes_project 9 109426771 109438247 + MGP_CASTEiJ_P0094753 Usp19 protein_coding protein_coding MGP_CASTEiJ_T0094754.1 MGP_CASTEiJ_G0034295.1 mouse_genomes_project 9 109426776 109438227 + MGP_CASTEiJ_P0094754 Usp19 protein_coding protein_coding MGP_CASTEiJ_T0094755.1 MGP_CASTEiJ_G0034295.1 mouse_genomes_project 9 109426776 109438227 + MGP_CASTEiJ_P0094755 Usp19 protein_coding protein_coding MGP_CASTEiJ_T0094756.1 MGP_CASTEiJ_G0034295.1 mouse_genomes_project 9 109426787 109438227 + MGP_CASTEiJ_P0094756 Usp19 protein_coding protein_coding MGP_CASTEiJ_T0094757.1 MGP_CASTEiJ_G0034295.1 mouse_genomes_project 9 109428625 109430838 + Usp19 protein_coding retained_intron MGP_CASTEiJ_T0094758.1 MGP_CASTEiJ_G0034295.1 mouse_genomes_project 9 109429399 109430148 + MGP_CASTEiJ_P0094758 Usp19 protein_coding protein_coding MGP_CASTEiJ_T0094759.1 MGP_CASTEiJ_G0034295.1 mouse_genomes_project 9 109430255 109431108 + Usp19 protein_coding retained_intron MGP_CASTEiJ_T0094760.1 MGP_CASTEiJ_G0034295.1 mouse_genomes_project 9 109430284 109431368 + Usp19 protein_coding retained_intron MGP_CASTEiJ_T0094761.1 MGP_CASTEiJ_G0034295.1 mouse_genomes_project 9 109430545 109437609 + MGP_CASTEiJ_P0094761 Usp19 protein_coding protein_coding MGP_CASTEiJ_T0094762.1 MGP_CASTEiJ_G0034295.1 mouse_genomes_project 9 109431443 109432373 + Usp19 protein_coding retained_intron MGP_CASTEiJ_T0094763.1 MGP_CASTEiJ_G0034295.1 mouse_genomes_project 9 109432256 109434467 + Usp19 protein_coding retained_intron MGP_CASTEiJ_T0094764.1 MGP_CASTEiJ_G0034295.1 mouse_genomes_project 9 109432898 109434629 + Usp19 protein_coding retained_intron MGP_CASTEiJ_T0094765.1 MGP_CASTEiJ_G0034295.1 mouse_genomes_project 9 109432998 109435107 + MGP_CASTEiJ_P0094765 Usp19 protein_coding protein_coding MGP_CASTEiJ_T0094766.1 MGP_CASTEiJ_G0034295.1 mouse_genomes_project 9 109434612 109435530 + Usp19 protein_coding retained_intron MGP_CASTEiJ_T0094767.1 MGP_CASTEiJ_G0034295.1 mouse_genomes_project 9 109436061 109437607 + Usp19 protein_coding retained_intron MGP_CASTEiJ_T0092547.1 MGP_CASTEiJ_G0033817.1 mouse_genomes_project 9 52489404 52532719 + MGP_CASTEiJ_P0092547 Npat protein_coding protein_coding MGP_CASTEiJ_T0092548.1 MGP_CASTEiJ_G0033817.1 mouse_genomes_project 9 52520815 52524489 + Npat protein_coding retained_intron MGP_CASTEiJ_T0011407.1 MGP_CASTEiJ_G0009595.1 mouse_genomes_project 9 61514060 61514153 + Gm23221 misc_RNA misc_RNA MGP_CASTEiJ_T0011404.1 MGP_CASTEiJ_G0009592.1 mouse_genomes_project 9 40856665 40856724 - Gm24420 misc_RNA misc_RNA MGP_CASTEiJ_T0093727.1 MGP_CASTEiJ_G0034108.1 mouse_genomes_project 9 89152222 89192486 - MGP_CASTEiJ_P0093727 Syncrip protein_coding protein_coding MGP_CASTEiJ_T0093728.1 MGP_CASTEiJ_G0034108.1 mouse_genomes_project 9 89157968 89190718 - MGP_CASTEiJ_P0093728 Syncrip protein_coding protein_coding MGP_CASTEiJ_T0093729.1 MGP_CASTEiJ_G0034108.1 mouse_genomes_project 9 89158169 89192090 - MGP_CASTEiJ_P0093729 Syncrip protein_coding protein_coding MGP_CASTEiJ_T0093730.1 MGP_CASTEiJ_G0034108.1 mouse_genomes_project 9 89158218 89192155 - MGP_CASTEiJ_P0093730 Syncrip protein_coding protein_coding MGP_CASTEiJ_T0093731.1 MGP_CASTEiJ_G0034108.1 mouse_genomes_project 9 89159467 89192108 - MGP_CASTEiJ_P0093731 Syncrip protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093732.1 MGP_CASTEiJ_G0034108.1 mouse_genomes_project 9 89161640 89192525 - MGP_CASTEiJ_P0093732 Syncrip protein_coding protein_coding MGP_CASTEiJ_T0093733.1 MGP_CASTEiJ_G0034108.1 mouse_genomes_project 9 89161640 89190706 - MGP_CASTEiJ_P0093733 Syncrip protein_coding protein_coding MGP_CASTEiJ_T0093734.1 MGP_CASTEiJ_G0034108.1 mouse_genomes_project 9 89171899 89190697 - Syncrip protein_coding retained_intron MGP_CASTEiJ_T0093735.1 MGP_CASTEiJ_G0034108.1 mouse_genomes_project 9 89186126 89191122 - MGP_CASTEiJ_P0093735 Syncrip protein_coding protein_coding MGP_CASTEiJ_T0093736.1 MGP_CASTEiJ_G0034108.1 mouse_genomes_project 9 89188700 89191177 - Syncrip protein_coding retained_intron MGP_CASTEiJ_T0093737.1 MGP_CASTEiJ_G0034108.1 mouse_genomes_project 9 89189615 89192486 - MGP_CASTEiJ_P0093737 Syncrip protein_coding protein_coding MGP_CASTEiJ_T0093938.1 MGP_CASTEiJ_G0034146.1 mouse_genomes_project 9 97662958 97683430 - MGP_CASTEiJ_P0093938 Trim42 protein_coding protein_coding MGP_CASTEiJ_T0098679.1 MGP_CASTEiJ_G0035610.1 mouse_genomes_project 9 96823429 96823545 - n-R5s87 rRNA rRNA MGP_CASTEiJ_T0009054.1 MGP_CASTEiJ_G0007292.1 mouse_genomes_project 9 85419552 85432802 + 4930554C24Rik lincRNA lincRNA MGP_CASTEiJ_T0095388.1 MGP_CASTEiJ_G0034415.1 mouse_genomes_project 9 121708064 121720007 - MGP_CASTEiJ_P0095388 Gorasp1 protein_coding protein_coding MGP_CASTEiJ_T0015426.1 MGP_CASTEiJ_G0013589.1 mouse_genomes_project 9 32067955 32068517 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093622.1 MGP_CASTEiJ_G0034087.1 mouse_genomes_project 9 84383393 84412907 - MGP_CASTEiJ_P0093622 Elovl4 protein_coding protein_coding MGP_CASTEiJ_T0093623.1 MGP_CASTEiJ_G0034087.1 mouse_genomes_project 9 84385082 84412721 - MGP_CASTEiJ_P0093623 Elovl4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093624.1 MGP_CASTEiJ_G0034087.1 mouse_genomes_project 9 84385360 84412932 - MGP_CASTEiJ_P0093624 Elovl4 protein_coding protein_coding MGP_CASTEiJ_T0093514.1 MGP_CASTEiJ_G0034064.1 mouse_genomes_project 9 78656321 78658351 - MGP_CASTEiJ_P0093514 protein_coding protein_coding MGP_CASTEiJ_T0011420.1 MGP_CASTEiJ_G0009608.1 mouse_genomes_project 9 122667965 122668286 - Gm23624 misc_RNA misc_RNA MGP_CASTEiJ_T0093034.1 MGP_CASTEiJ_G0033955.1 mouse_genomes_project 9 64942172 64968459 + MGP_CASTEiJ_P0093034 Parp16 protein_coding protein_coding MGP_CASTEiJ_T0101358.1 MGP_CASTEiJ_G0038271.1 mouse_genomes_project 9 12424836 12424912 - Gm24339 snoRNA snoRNA MGP_CASTEiJ_T0005361.1 MGP_CASTEiJ_G0004535.1 mouse_genomes_project 9 96984238 96989858 + A930006L05Rik antisense antisense MGP_CASTEiJ_T0095269.1 MGP_CASTEiJ_G0034381.1 mouse_genomes_project 9 116092144 116132297 + MGP_CASTEiJ_P0095269 protein_coding protein_coding MGP_CASTEiJ_T0095270.1 MGP_CASTEiJ_G0034381.1 mouse_genomes_project 9 116092193 116115029 + MGP_CASTEiJ_P0095270 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009093.1 MGP_CASTEiJ_G0007323.1 mouse_genomes_project 9 108082105 108084863 + 1700039M15Rik lincRNA lincRNA MGP_CASTEiJ_T0091964.1 MGP_CASTEiJ_G0033580.1 mouse_genomes_project 9 35764143 35765191 + MGP_CASTEiJ_P0091964 Olfr876 protein_coding protein_coding MGP_CASTEiJ_T0092386.1 MGP_CASTEiJ_G0033762.1 mouse_genomes_project 9 47017690 47041463 - MGP_CASTEiJ_P0092386 Nxpe2 protein_coding protein_coding MGP_CASTEiJ_T0092387.1 MGP_CASTEiJ_G0033762.1 mouse_genomes_project 9 47018828 47041399 - MGP_CASTEiJ_P0092387 Nxpe2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092388.1 MGP_CASTEiJ_G0033762.1 mouse_genomes_project 9 47026008 47053959 - MGP_CASTEiJ_P0092388 Nxpe2 protein_coding protein_coding MGP_CASTEiJ_T0092389.1 MGP_CASTEiJ_G0033762.1 mouse_genomes_project 9 47030777 47041419 - Nxpe2 protein_coding processed_transcript MGP_CASTEiJ_T0092390.1 MGP_CASTEiJ_G0033762.1 mouse_genomes_project 9 47031105 47053959 - Nxpe2 protein_coding processed_transcript MGP_CASTEiJ_T0093925.1 MGP_CASTEiJ_G0034144.1 mouse_genomes_project 9 97246218 97324112 - MGP_CASTEiJ_P0093925 Spsb4 protein_coding protein_coding MGP_CASTEiJ_T0093926.1 MGP_CASTEiJ_G0034144.1 mouse_genomes_project 9 97246221 97287282 - Spsb4 protein_coding processed_transcript MGP_CASTEiJ_T0093927.1 MGP_CASTEiJ_G0034144.1 mouse_genomes_project 9 97246701 97275064 - Spsb4 protein_coding processed_transcript MGP_CASTEiJ_T0093928.1 MGP_CASTEiJ_G0034144.1 mouse_genomes_project 9 97297131 97324033 - Spsb4 protein_coding retained_intron MGP_CASTEiJ_T0093973.1 MGP_CASTEiJ_G0034161.1 mouse_genomes_project 9 99618365 99626173 - MGP_CASTEiJ_P0093973 Faiml protein_coding protein_coding MGP_CASTEiJ_T0093974.1 MGP_CASTEiJ_G0034161.1 mouse_genomes_project 9 99618457 99625298 - MGP_CASTEiJ_P0093974 Faiml protein_coding protein_coding MGP_CASTEiJ_T0093025.1 MGP_CASTEiJ_G0033950.1 mouse_genomes_project 9 64650104 64682473 + MGP_CASTEiJ_P0093025 Vwa9 protein_coding protein_coding MGP_CASTEiJ_T0093026.1 MGP_CASTEiJ_G0033950.1 mouse_genomes_project 9 64650209 64682473 + MGP_CASTEiJ_P0093026 Vwa9 protein_coding protein_coding MGP_CASTEiJ_T0091608.1 MGP_CASTEiJ_G0033461.1 mouse_genomes_project 9 18969831 18973954 - MGP_CASTEiJ_P0091608 Yipf2 protein_coding protein_coding MGP_CASTEiJ_T0091609.1 MGP_CASTEiJ_G0033461.1 mouse_genomes_project 9 18969831 18973954 - MGP_CASTEiJ_P0091609 Yipf2 protein_coding protein_coding MGP_CASTEiJ_T0091610.1 MGP_CASTEiJ_G0033461.1 mouse_genomes_project 9 18969831 18973954 - MGP_CASTEiJ_P0091610 Yipf2 protein_coding protein_coding MGP_CASTEiJ_T0002321.1 MGP_CASTEiJ_G0002239.1 mouse_genomes_project 9 84031092 84033697 + TEC TEC MGP_CASTEiJ_T0095305.1 MGP_CASTEiJ_G0034391.1 mouse_genomes_project 9 119653370 119681754 + MGP_CASTEiJ_P0095305 Azi2 protein_coding protein_coding MGP_CASTEiJ_T0095306.1 MGP_CASTEiJ_G0034391.1 mouse_genomes_project 9 119653449 119680104 + MGP_CASTEiJ_P0095306 Azi2 protein_coding protein_coding MGP_CASTEiJ_T0095307.1 MGP_CASTEiJ_G0034391.1 mouse_genomes_project 9 119653486 119690242 + MGP_CASTEiJ_P0095307 Azi2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095308.1 MGP_CASTEiJ_G0034391.1 mouse_genomes_project 9 119653557 119664494 + Azi2 protein_coding retained_intron MGP_CASTEiJ_T0095309.1 MGP_CASTEiJ_G0034391.1 mouse_genomes_project 9 119662209 119682117 + MGP_CASTEiJ_P0095309 Azi2 protein_coding protein_coding MGP_CASTEiJ_T0095310.1 MGP_CASTEiJ_G0034391.1 mouse_genomes_project 9 119662270 119665768 + Azi2 protein_coding retained_intron MGP_CASTEiJ_T0095311.1 MGP_CASTEiJ_G0034391.1 mouse_genomes_project 9 119664995 119681512 + MGP_CASTEiJ_P0095311 Azi2 protein_coding protein_coding MGP_CASTEiJ_T0095312.1 MGP_CASTEiJ_G0034391.1 mouse_genomes_project 9 119669577 119681414 + Azi2 protein_coding retained_intron MGP_CASTEiJ_T0002280.1 MGP_CASTEiJ_G0002198.1 mouse_genomes_project 9 30356921 30358827 - TEC TEC MGP_CASTEiJ_T0091632.1 MGP_CASTEiJ_G0033472.1 mouse_genomes_project 9 19339845 19354196 + MGP_CASTEiJ_P0091632 Plppr2 protein_coding protein_coding MGP_CASTEiJ_T0091633.1 MGP_CASTEiJ_G0033472.1 mouse_genomes_project 9 19341944 19353302 + MGP_CASTEiJ_P0091633 Plppr2 protein_coding protein_coding MGP_CASTEiJ_T0002380.1 MGP_CASTEiJ_G0002297.1 mouse_genomes_project 9 108545818 108547019 + TEC TEC MGP_CASTEiJ_T0015528.1 MGP_CASTEiJ_G0013691.1 mouse_genomes_project 9 101832075 101832328 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100109.1 MGP_CASTEiJ_G0037022.1 mouse_genomes_project 9 17501713 17501853 - Gm26290 snRNA snRNA MGP_CASTEiJ_T0015447.1 MGP_CASTEiJ_G0013610.1 mouse_genomes_project 9 63032364 63033274 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092104.1 MGP_CASTEiJ_G0033678.1 mouse_genomes_project 9 39183012 39194791 - MGP_CASTEiJ_P0092104 Crtam protein_coding protein_coding MGP_CASTEiJ_T0092105.1 MGP_CASTEiJ_G0033678.1 mouse_genomes_project 9 39183056 39215824 - MGP_CASTEiJ_P0092105 Crtam protein_coding protein_coding MGP_CASTEiJ_T0092106.1 MGP_CASTEiJ_G0033678.1 mouse_genomes_project 9 39183058 39215853 - MGP_CASTEiJ_P0092106 Crtam protein_coding protein_coding MGP_CASTEiJ_T0092107.1 MGP_CASTEiJ_G0033678.1 mouse_genomes_project 9 39183059 39215866 - MGP_CASTEiJ_P0092107 Crtam protein_coding protein_coding MGP_CASTEiJ_T0092296.1 MGP_CASTEiJ_G0033739.1 mouse_genomes_project 9 43698977 43710585 + BC049352 protein_coding lincRNA MGP_CASTEiJ_T0092297.1 MGP_CASTEiJ_G0033739.1 mouse_genomes_project 9 43699004 43771126 + BC049352 protein_coding lincRNA MGP_CASTEiJ_T0092298.1 MGP_CASTEiJ_G0033739.1 mouse_genomes_project 9 43713388 43771126 + BC049352 protein_coding lincRNA MGP_CASTEiJ_T0092299.1 MGP_CASTEiJ_G0033739.1 mouse_genomes_project 9 43713388 43771083 + MGP_CASTEiJ_P0092299 BC049352 protein_coding protein_coding MGP_CASTEiJ_T0093041.1 MGP_CASTEiJ_G0033958.1 mouse_genomes_project 9 65083670 65096633 + MGP_CASTEiJ_P0093041 Pdcd7 protein_coding protein_coding MGP_CASTEiJ_T0094171.1 MGP_CASTEiJ_G0034202.1 mouse_genomes_project 9 104799338 104906512 - MGP_CASTEiJ_P0094171 protein_coding unknown_likely_coding MGP_CASTEiJ_T0094172.1 MGP_CASTEiJ_G0034202.1 mouse_genomes_project 9 104799345 104906523 - MGP_CASTEiJ_P0094172 protein_coding protein_coding MGP_CASTEiJ_T0094173.1 MGP_CASTEiJ_G0034202.1 mouse_genomes_project 9 104800115 104801556 - protein_coding retained_intron MGP_CASTEiJ_T0094174.1 MGP_CASTEiJ_G0034202.1 mouse_genomes_project 9 104800236 104804903 - protein_coding processed_transcript MGP_CASTEiJ_T0094175.1 MGP_CASTEiJ_G0034202.1 mouse_genomes_project 9 104800330 104805161 - protein_coding retained_intron MGP_CASTEiJ_T0094176.1 MGP_CASTEiJ_G0034202.1 mouse_genomes_project 9 104800380 104890463 - MGP_CASTEiJ_P0094176 protein_coding protein_coding MGP_CASTEiJ_T0094177.1 MGP_CASTEiJ_G0034202.1 mouse_genomes_project 9 104804892 104810856 - MGP_CASTEiJ_P0094177 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094178.1 MGP_CASTEiJ_G0034202.1 mouse_genomes_project 9 104810166 104813144 - MGP_CASTEiJ_P0094178 protein_coding protein_coding MGP_CASTEiJ_T0094179.1 MGP_CASTEiJ_G0034202.1 mouse_genomes_project 9 104812853 104816221 - protein_coding retained_intron MGP_CASTEiJ_T0094180.1 MGP_CASTEiJ_G0034202.1 mouse_genomes_project 9 104830482 104835632 - protein_coding retained_intron MGP_CASTEiJ_T0094181.1 MGP_CASTEiJ_G0034202.1 mouse_genomes_project 9 104837766 104849985 - MGP_CASTEiJ_P0094181 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094182.1 MGP_CASTEiJ_G0034202.1 mouse_genomes_project 9 104841193 104849172 - protein_coding retained_intron MGP_CASTEiJ_T0094183.1 MGP_CASTEiJ_G0034202.1 mouse_genomes_project 9 104844729 104851382 - protein_coding retained_intron MGP_CASTEiJ_T0094184.1 MGP_CASTEiJ_G0034202.1 mouse_genomes_project 9 104870722 104871361 - protein_coding retained_intron MGP_CASTEiJ_T0094185.1 MGP_CASTEiJ_G0034202.1 mouse_genomes_project 9 104879901 104906496 - protein_coding retained_intron MGP_CASTEiJ_T0095474.1 MGP_CASTEiJ_G0034437.1 mouse_genomes_project 9 123657716 123669458 + MGP_CASTEiJ_P0095474 Zfp651 protein_coding protein_coding MGP_CASTEiJ_T0092570.1 MGP_CASTEiJ_G0033827.1 mouse_genomes_project 9 53276000 53328499 + MGP_CASTEiJ_P0092570 Gldn protein_coding protein_coding MGP_CASTEiJ_T0092571.1 MGP_CASTEiJ_G0033827.1 mouse_genomes_project 9 53276244 53324765 + MGP_CASTEiJ_P0092571 Gldn protein_coding unknown_likely_coding MGP_CASTEiJ_T0092013.1 MGP_CASTEiJ_G0033622.1 mouse_genomes_project 9 36937457 36938384 + MGP_CASTEiJ_P0092013 protein_coding protein_coding MGP_CASTEiJ_T0009025.1 MGP_CASTEiJ_G0007269.1 mouse_genomes_project 9 67664090 67665597 - M5C1000I18Rik lincRNA lincRNA MGP_CASTEiJ_T0009026.1 MGP_CASTEiJ_G0007269.1 mouse_genomes_project 9 67664091 67665597 - M5C1000I18Rik lincRNA lincRNA MGP_CASTEiJ_T0009027.1 MGP_CASTEiJ_G0007269.1 mouse_genomes_project 9 67664091 67665619 - M5C1000I18Rik lincRNA lincRNA MGP_CASTEiJ_T0015506.1 MGP_CASTEiJ_G0013669.1 mouse_genomes_project 9 93530696 93531699 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092596.1 MGP_CASTEiJ_G0033835.1 mouse_genomes_project 9 53776719 53786089 + MGP_CASTEiJ_P0092596 Crabp1 protein_coding protein_coding MGP_CASTEiJ_T0092328.1 MGP_CASTEiJ_G0033748.1 mouse_genomes_project 9 44460921 44484022 + MGP_CASTEiJ_P0092328 Pcsk7 protein_coding protein_coding MGP_CASTEiJ_T0093228.1 MGP_CASTEiJ_G0034001.1 mouse_genomes_project 9 70090622 70150489 - MGP_CASTEiJ_P0093228 Fam81a protein_coding protein_coding MGP_CASTEiJ_T0093229.1 MGP_CASTEiJ_G0034001.1 mouse_genomes_project 9 70105078 70105605 - Fam81a protein_coding retained_intron MGP_CASTEiJ_T0093230.1 MGP_CASTEiJ_G0034001.1 mouse_genomes_project 9 70131967 70150714 - MGP_CASTEiJ_P0093230 Fam81a protein_coding protein_coding MGP_CASTEiJ_T0093231.1 MGP_CASTEiJ_G0034001.1 mouse_genomes_project 9 70131998 70151433 - MGP_CASTEiJ_P0093231 Fam81a protein_coding protein_coding MGP_CASTEiJ_T0002287.1 MGP_CASTEiJ_G0002205.1 mouse_genomes_project 9 55358446 55360014 + TEC TEC MGP_CASTEiJ_T0002302.1 MGP_CASTEiJ_G0002220.1 mouse_genomes_project 9 72556091 72559085 + TEC TEC MGP_CASTEiJ_T0009033.1 MGP_CASTEiJ_G0007274.1 mouse_genomes_project 9 72520079 72520690 + Gm27255 lincRNA lincRNA MGP_CASTEiJ_T0092435.1 MGP_CASTEiJ_G0033788.1 mouse_genomes_project 9 49436596 49452389 - MGP_CASTEiJ_P0092435 AU019823 protein_coding protein_coding MGP_CASTEiJ_T0092436.1 MGP_CASTEiJ_G0033788.1 mouse_genomes_project 9 49436600 49452389 - MGP_CASTEiJ_P0092436 AU019823 protein_coding protein_coding MGP_CASTEiJ_T0092437.1 MGP_CASTEiJ_G0033788.1 mouse_genomes_project 9 49441608 49452335 - MGP_CASTEiJ_P0092437 AU019823 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092438.1 MGP_CASTEiJ_G0033788.1 mouse_genomes_project 9 49441735 49452192 - MGP_CASTEiJ_P0092438 AU019823 protein_coding protein_coding MGP_CASTEiJ_T0092439.1 MGP_CASTEiJ_G0033788.1 mouse_genomes_project 9 49441844 49452206 - MGP_CASTEiJ_P0092439 AU019823 protein_coding protein_coding MGP_CASTEiJ_T0092440.1 MGP_CASTEiJ_G0033788.1 mouse_genomes_project 9 49441877 49452189 - MGP_CASTEiJ_P0092440 AU019823 protein_coding protein_coding MGP_CASTEiJ_T0015425.1 MGP_CASTEiJ_G0013588.1 mouse_genomes_project 9 31793011 31793243 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093389.1 MGP_CASTEiJ_G0034031.1 mouse_genomes_project 9 73281001 73298857 + MGP_CASTEiJ_P0093389 Gm20509 protein_coding protein_coding MGP_CASTEiJ_T0101367.1 MGP_CASTEiJ_G0038280.1 mouse_genomes_project 9 33043640 33043784 + Gm24262 snoRNA snoRNA MGP_CASTEiJ_T0092918.1 MGP_CASTEiJ_G0033924.1 mouse_genomes_project 9 61868535 61907907 + Anp32a protein_coding processed_transcript MGP_CASTEiJ_T0092919.1 MGP_CASTEiJ_G0033924.1 mouse_genomes_project 9 61868571 61909012 + MGP_CASTEiJ_P0092919 Anp32a protein_coding protein_coding MGP_CASTEiJ_T0092920.1 MGP_CASTEiJ_G0033924.1 mouse_genomes_project 9 61869143 61904941 + MGP_CASTEiJ_P0092920 Anp32a protein_coding protein_coding MGP_CASTEiJ_T0092921.1 MGP_CASTEiJ_G0033924.1 mouse_genomes_project 9 61869316 61907878 + MGP_CASTEiJ_P0092921 Anp32a protein_coding protein_coding MGP_CASTEiJ_T0092922.1 MGP_CASTEiJ_G0033924.1 mouse_genomes_project 9 61869705 61903806 + MGP_CASTEiJ_P0092922 Anp32a protein_coding protein_coding MGP_CASTEiJ_T0092923.1 MGP_CASTEiJ_G0033924.1 mouse_genomes_project 9 61870798 61908013 + MGP_CASTEiJ_P0092923 Anp32a protein_coding unknown_likely_coding MGP_CASTEiJ_T0092924.1 MGP_CASTEiJ_G0033924.1 mouse_genomes_project 9 61871304 61903819 + Anp32a protein_coding processed_transcript MGP_CASTEiJ_T0092925.1 MGP_CASTEiJ_G0033924.1 mouse_genomes_project 9 61872064 61904938 + Anp32a protein_coding processed_transcript MGP_CASTEiJ_T0092926.1 MGP_CASTEiJ_G0033924.1 mouse_genomes_project 9 61897228 61903899 + Anp32a protein_coding processed_transcript MGP_CASTEiJ_T0092927.1 MGP_CASTEiJ_G0033924.1 mouse_genomes_project 9 61897234 61907513 + Anp32a protein_coding processed_transcript MGP_CASTEiJ_T0092928.1 MGP_CASTEiJ_G0033924.1 mouse_genomes_project 9 61903661 61907972 + Anp32a protein_coding retained_intron MGP_CASTEiJ_T0008986.1 MGP_CASTEiJ_G0007237.1 mouse_genomes_project 9 30860745 30918844 + lincRNA lincRNA MGP_CASTEiJ_T0094264.1 MGP_CASTEiJ_G0034215.1 mouse_genomes_project 9 106929963 106935237 - MGP_CASTEiJ_P0094264 Glyctk protein_coding protein_coding MGP_CASTEiJ_T0094265.1 MGP_CASTEiJ_G0034215.1 mouse_genomes_project 9 106929975 106935257 - MGP_CASTEiJ_P0094265 Glyctk protein_coding protein_coding MGP_CASTEiJ_T0094266.1 MGP_CASTEiJ_G0034215.1 mouse_genomes_project 9 106934409 106935236 - MGP_CASTEiJ_P0094266 Glyctk protein_coding protein_coding MGP_CASTEiJ_T0094267.1 MGP_CASTEiJ_G0034215.1 mouse_genomes_project 9 106934708 106935229 - MGP_CASTEiJ_P0094267 Glyctk protein_coding protein_coding MGP_CASTEiJ_T0009019.1 MGP_CASTEiJ_G0007265.1 mouse_genomes_project 9 60156880 60184317 + 1700036A12Rik lincRNA lincRNA MGP_CASTEiJ_T0009020.1 MGP_CASTEiJ_G0007265.1 mouse_genomes_project 9 60183648 60184002 + 1700036A12Rik lincRNA lincRNA MGP_CASTEiJ_T0092028.1 MGP_CASTEiJ_G0033637.1 mouse_genomes_project 9 37653854 37667981 - MGP_CASTEiJ_P0092028 Olfr44 protein_coding protein_coding MGP_CASTEiJ_T0015509.1 MGP_CASTEiJ_G0013672.1 mouse_genomes_project 9 95582564 95583561 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005318.1 MGP_CASTEiJ_G0004508.1 mouse_genomes_project 9 59339730 59346956 + Gm7616 antisense antisense MGP_CASTEiJ_T0091558.1 MGP_CASTEiJ_G0033448.1 mouse_genomes_project 9 18580539 18590147 - MGP_CASTEiJ_P0091558 Keap1 protein_coding protein_coding MGP_CASTEiJ_T0091559.1 MGP_CASTEiJ_G0033448.1 mouse_genomes_project 9 18580540 18589886 - MGP_CASTEiJ_P0091559 Keap1 protein_coding protein_coding MGP_CASTEiJ_T0091560.1 MGP_CASTEiJ_G0033448.1 mouse_genomes_project 9 18580876 18589628 - MGP_CASTEiJ_P0091560 Keap1 protein_coding protein_coding MGP_CASTEiJ_T0091561.1 MGP_CASTEiJ_G0033448.1 mouse_genomes_project 9 18581441 18589894 - MGP_CASTEiJ_P0091561 Keap1 protein_coding protein_coding MGP_CASTEiJ_T0091562.1 MGP_CASTEiJ_G0033448.1 mouse_genomes_project 9 18586904 18588009 - Keap1 protein_coding processed_transcript MGP_CASTEiJ_T0009018.1 MGP_CASTEiJ_G0007264.1 mouse_genomes_project 9 60105753 60108425 + B930082K07Rik lincRNA lincRNA MGP_CASTEiJ_T0093498.1 MGP_CASTEiJ_G0034060.1 mouse_genomes_project 9 78439118 78452146 + MGP_CASTEiJ_P0093498 Gcm1 protein_coding protein_coding MGP_CASTEiJ_T0091927.1 MGP_CASTEiJ_G0033564.1 mouse_genomes_project 9 35151014 35178249 - MGP_CASTEiJ_P0091927 Slc37a2 protein_coding protein_coding MGP_CASTEiJ_T0091928.1 MGP_CASTEiJ_G0033564.1 mouse_genomes_project 9 35152179 35177925 - MGP_CASTEiJ_P0091928 Slc37a2 protein_coding protein_coding MGP_CASTEiJ_T0091929.1 MGP_CASTEiJ_G0033564.1 mouse_genomes_project 9 35152375 35157005 - Slc37a2 protein_coding retained_intron MGP_CASTEiJ_T0005376.1 MGP_CASTEiJ_G0004548.1 mouse_genomes_project 9 106925866 106936825 + D030055H07Rik antisense antisense MGP_CASTEiJ_T0005377.1 MGP_CASTEiJ_G0004548.1 mouse_genomes_project 9 106932066 106936871 + D030055H07Rik antisense antisense MGP_CASTEiJ_T0005378.1 MGP_CASTEiJ_G0004548.1 mouse_genomes_project 9 106933454 106937321 + D030055H07Rik antisense antisense MGP_CASTEiJ_T0015518.1 MGP_CASTEiJ_G0013681.1 mouse_genomes_project 9 97348563 97348864 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0093240.1 MGP_CASTEiJ_G0034006.1 mouse_genomes_project 9 70639709 70701129 - MGP_CASTEiJ_P0093240 Fam63b protein_coding protein_coding MGP_CASTEiJ_T0093241.1 MGP_CASTEiJ_G0034006.1 mouse_genomes_project 9 70641874 70701001 - MGP_CASTEiJ_P0093241 Fam63b protein_coding unknown_likely_coding MGP_CASTEiJ_T0008983.1 MGP_CASTEiJ_G0007234.1 mouse_genomes_project 9 28822110 28824020 - Gm17508 lincRNA lincRNA MGP_CASTEiJ_T0093046.1 MGP_CASTEiJ_G0033962.1 mouse_genomes_project 9 65155222 65158034 - MGP_CASTEiJ_P0093046 Slc51b protein_coding protein_coding MGP_CASTEiJ_T0095458.1 MGP_CASTEiJ_G0034436.1 mouse_genomes_project 9 123615777 123640423 + MGP_CASTEiJ_P0095458 Nktr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095459.1 MGP_CASTEiJ_G0034436.1 mouse_genomes_project 9 123615784 123654521 + MGP_CASTEiJ_P0095459 Nktr protein_coding protein_coding MGP_CASTEiJ_T0095460.1 MGP_CASTEiJ_G0034436.1 mouse_genomes_project 9 123615786 123640341 + MGP_CASTEiJ_P0095460 Nktr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095461.1 MGP_CASTEiJ_G0034436.1 mouse_genomes_project 9 123615823 123638818 + MGP_CASTEiJ_P0095461 Nktr protein_coding protein_coding MGP_CASTEiJ_T0095462.1 MGP_CASTEiJ_G0034436.1 mouse_genomes_project 9 123615825 123627674 + Nktr protein_coding retained_intron MGP_CASTEiJ_T0095463.1 MGP_CASTEiJ_G0034436.1 mouse_genomes_project 9 123615851 123633098 + Nktr protein_coding retained_intron MGP_CASTEiJ_T0095464.1 MGP_CASTEiJ_G0034436.1 mouse_genomes_project 9 123615906 123617882 + Nktr protein_coding processed_transcript MGP_CASTEiJ_T0095465.1 MGP_CASTEiJ_G0034436.1 mouse_genomes_project 9 123617253 123645890 + MGP_CASTEiJ_P0095465 Nktr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095466.1 MGP_CASTEiJ_G0034436.1 mouse_genomes_project 9 123617287 123647534 + MGP_CASTEiJ_P0095466 Nktr protein_coding protein_coding MGP_CASTEiJ_T0095467.1 MGP_CASTEiJ_G0034436.1 mouse_genomes_project 9 123617669 123629170 + MGP_CASTEiJ_P0095467 Nktr protein_coding protein_coding MGP_CASTEiJ_T0095468.1 MGP_CASTEiJ_G0034436.1 mouse_genomes_project 9 123627058 123629238 + Nktr protein_coding retained_intron MGP_CASTEiJ_T0095469.1 MGP_CASTEiJ_G0034436.1 mouse_genomes_project 9 123628801 123640377 + Nktr protein_coding retained_intron MGP_CASTEiJ_T0095470.1 MGP_CASTEiJ_G0034436.1 mouse_genomes_project 9 123648479 123652074 + MGP_CASTEiJ_P0095470 Nktr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0095471.1 MGP_CASTEiJ_G0034436.1 mouse_genomes_project 9 123648892 123650325 + Nktr protein_coding retained_intron MGP_CASTEiJ_T0095472.1 MGP_CASTEiJ_G0034436.1 mouse_genomes_project 9 123649344 123652535 + MGP_CASTEiJ_P0095472 Nktr protein_coding protein_coding MGP_CASTEiJ_T0095473.1 MGP_CASTEiJ_G0034436.1 mouse_genomes_project 9 123650204 123652034 + Nktr protein_coding retained_intron MGP_CASTEiJ_T0099031.1 MGP_CASTEiJ_G0035949.1 mouse_genomes_project 9 109529384 109529918 - Gm38163 sense_intronic sense_intronic MGP_CASTEiJ_T0005282.1 MGP_CASTEiJ_G0004484.1 mouse_genomes_project 9 26729791 26740191 + Gm15520 antisense antisense MGP_CASTEiJ_T0009049.1 MGP_CASTEiJ_G0007289.1 mouse_genomes_project 9 82812594 82815780 + 1700063H06Rik lincRNA lincRNA MGP_CASTEiJ_T0002282.1 MGP_CASTEiJ_G0002200.1 mouse_genomes_project 9 32307437 32329356 - TEC TEC MGP_CASTEiJ_T0005370.1 MGP_CASTEiJ_G0004542.1 mouse_genomes_project 9 100127033 100172355 + Gm16004 antisense antisense MGP_CASTEiJ_T0092519.1 MGP_CASTEiJ_G0033805.1 mouse_genomes_project 9 50138272 50184538 - MGP_CASTEiJ_P0092519 1810046K07Rik protein_coding protein_coding MGP_CASTEiJ_T0092520.1 MGP_CASTEiJ_G0033805.1 mouse_genomes_project 9 50139033 50163756 - MGP_CASTEiJ_P0092520 1810046K07Rik protein_coding protein_coding MGP_CASTEiJ_T0093989.1 MGP_CASTEiJ_G0034164.1 mouse_genomes_project 9 99777837 99836373 - MGP_CASTEiJ_P0093989 Mras protein_coding protein_coding MGP_CASTEiJ_T0093990.1 MGP_CASTEiJ_G0034164.1 mouse_genomes_project 9 99780347 99835873 - MGP_CASTEiJ_P0093990 Mras protein_coding protein_coding MGP_CASTEiJ_T0093991.1 MGP_CASTEiJ_G0034164.1 mouse_genomes_project 9 99780398 99824926 - MGP_CASTEiJ_P0093991 Mras protein_coding protein_coding MGP_CASTEiJ_T0093992.1 MGP_CASTEiJ_G0034164.1 mouse_genomes_project 9 99782152 99787115 - Mras protein_coding retained_intron MGP_CASTEiJ_T0093993.1 MGP_CASTEiJ_G0034164.1 mouse_genomes_project 9 99785259 99795895 - Mras protein_coding retained_intron MGP_CASTEiJ_T0093994.1 MGP_CASTEiJ_G0034164.1 mouse_genomes_project 9 99785420 99817547 - MGP_CASTEiJ_P0093994 Mras protein_coding protein_coding MGP_CASTEiJ_T0100138.1 MGP_CASTEiJ_G0037051.1 mouse_genomes_project 9 70553245 70553344 + Gm23588 snRNA snRNA MGP_CASTEiJ_T0093405.1 MGP_CASTEiJ_G0034036.1 mouse_genomes_project 9 75138235 75225200 + MGP_CASTEiJ_P0093405 Fam214a protein_coding protein_coding MGP_CASTEiJ_T0093406.1 MGP_CASTEiJ_G0034036.1 mouse_genomes_project 9 75165036 75225200 + MGP_CASTEiJ_P0093406 Fam214a protein_coding protein_coding MGP_CASTEiJ_T0008993.1 MGP_CASTEiJ_G0007243.1 mouse_genomes_project 9 33904890 33913802 - Gm27187 lincRNA lincRNA MGP_CASTEiJ_T0008994.1 MGP_CASTEiJ_G0007243.1 mouse_genomes_project 9 33904937 33913918 - Gm27187 lincRNA lincRNA MGP_CASTEiJ_T0092627.1 MGP_CASTEiJ_G0033845.1 mouse_genomes_project 9 54369843 54484224 + MGP_CASTEiJ_P0092627 Tmem266 protein_coding protein_coding MGP_CASTEiJ_T0092628.1 MGP_CASTEiJ_G0033845.1 mouse_genomes_project 9 54369879 54484224 + MGP_CASTEiJ_P0092628 Tmem266 protein_coding protein_coding MGP_CASTEiJ_T0092629.1 MGP_CASTEiJ_G0033845.1 mouse_genomes_project 9 54376141 54483239 + Tmem266 protein_coding processed_transcript MGP_CASTEiJ_T0005335.1 MGP_CASTEiJ_G0004520.1 mouse_genomes_project 9 78772785 78773982 - 4930542C12Rik antisense antisense MGP_CASTEiJ_T0005379.1 MGP_CASTEiJ_G0004549.1 mouse_genomes_project 9 107037500 107038954 + 4930500F10Rik antisense antisense MGP_CASTEiJ_T0002372.1 MGP_CASTEiJ_G0002289.1 mouse_genomes_project 9 104683004 104685184 - TEC TEC MGP_CASTEiJ_T0002357.1 MGP_CASTEiJ_G0002274.1 mouse_genomes_project 9 101610634 101615669 + TEC TEC MGP_CASTEiJ_T0094108.1 MGP_CASTEiJ_G0034188.1 mouse_genomes_project 9 103679933 103734280 + Rab6b protein_coding processed_transcript MGP_CASTEiJ_T0094109.1 MGP_CASTEiJ_G0034188.1 mouse_genomes_project 9 103679953 103758731 + MGP_CASTEiJ_P0094109 Rab6b protein_coding protein_coding MGP_CASTEiJ_T0002371.1 MGP_CASTEiJ_G0002288.1 mouse_genomes_project 9 104200987 104202576 - TEC TEC MGP_CASTEiJ_T0100164.1 MGP_CASTEiJ_G0037077.1 mouse_genomes_project 9 109700741 109700848 - Gm24259 snRNA snRNA MGP_CASTEiJ_T0095386.1 MGP_CASTEiJ_G0034413.1 mouse_genomes_project 9 121676117 121708971 + MGP_CASTEiJ_P0095386 Wdr48 protein_coding protein_coding MGP_CASTEiJ_T0092243.1 MGP_CASTEiJ_G0033722.1 mouse_genomes_project 9 43235875 43263712 - MGP_CASTEiJ_P0092243 Arcn1 protein_coding protein_coding MGP_CASTEiJ_T0092244.1 MGP_CASTEiJ_G0033722.1 mouse_genomes_project 9 43250873 43263665 - Arcn1 protein_coding retained_intron MGP_CASTEiJ_T0092245.1 MGP_CASTEiJ_G0033722.1 mouse_genomes_project 9 43251784 43255925 - Arcn1 protein_coding processed_transcript MGP_CASTEiJ_T0091576.1 MGP_CASTEiJ_G0033455.1 mouse_genomes_project 9 18729245 18763052 + MGP_CASTEiJ_P0091576 Ilf3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091577.1 MGP_CASTEiJ_G0033455.1 mouse_genomes_project 9 18729332 18763050 + MGP_CASTEiJ_P0091577 Ilf3 protein_coding protein_coding MGP_CASTEiJ_T0091578.1 MGP_CASTEiJ_G0033455.1 mouse_genomes_project 9 18729332 18766630 + MGP_CASTEiJ_P0091578 Ilf3 protein_coding protein_coding MGP_CASTEiJ_T0091579.1 MGP_CASTEiJ_G0033455.1 mouse_genomes_project 9 18764122 18766639 + MGP_CASTEiJ_P0091579 Ilf3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0005339.1 MGP_CASTEiJ_G0004524.1 mouse_genomes_project 9 82160186 82173245 + D430036J16Rik antisense antisense MGP_CASTEiJ_T0005340.1 MGP_CASTEiJ_G0004524.1 mouse_genomes_project 9 82160565 82173771 + D430036J16Rik antisense antisense MGP_CASTEiJ_T0005341.1 MGP_CASTEiJ_G0004524.1 mouse_genomes_project 9 82160668 82172811 + D430036J16Rik antisense antisense MGP_CASTEiJ_T0005342.1 MGP_CASTEiJ_G0004524.1 mouse_genomes_project 9 82160993 82173700 + D430036J16Rik antisense antisense MGP_CASTEiJ_T0005343.1 MGP_CASTEiJ_G0004524.1 mouse_genomes_project 9 82161053 82172968 + D430036J16Rik antisense antisense MGP_CASTEiJ_T0093713.1 MGP_CASTEiJ_G0034105.1 mouse_genomes_project 9 89016724 89062226 + MGP_CASTEiJ_P0093713 Nt5e protein_coding protein_coding MGP_CASTEiJ_T0093714.1 MGP_CASTEiJ_G0034105.1 mouse_genomes_project 9 89017069 89078297 + MGP_CASTEiJ_P0093714 Nt5e protein_coding unknown_likely_coding MGP_CASTEiJ_T0093715.1 MGP_CASTEiJ_G0034105.1 mouse_genomes_project 9 89017147 89020727 + Nt5e protein_coding retained_intron MGP_CASTEiJ_T0093716.1 MGP_CASTEiJ_G0034105.1 mouse_genomes_project 9 89017162 89057981 + Nt5e protein_coding retained_intron MGP_CASTEiJ_T0002322.1 MGP_CASTEiJ_G0002240.1 mouse_genomes_project 9 86019259 86021087 - TEC TEC MGP_CASTEiJ_T0015432.1 MGP_CASTEiJ_G0013595.1 mouse_genomes_project 9 36145425 36146461 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0005281.1 MGP_CASTEiJ_G0004483.1 mouse_genomes_project 9 21854613 21944911 + Gm10701 antisense antisense MGP_CASTEiJ_T0091657.1 MGP_CASTEiJ_G0033485.1 mouse_genomes_project 9 19614291 19642898 + MGP_CASTEiJ_P0091657 Zfp872 protein_coding protein_coding MGP_CASTEiJ_T0091658.1 MGP_CASTEiJ_G0033485.1 mouse_genomes_project 9 19626148 19629617 + MGP_CASTEiJ_P0091658 Zfp872 protein_coding protein_coding MGP_CASTEiJ_T0091391.1 MGP_CASTEiJ_G0033375.1 mouse_genomes_project 9 12414685 12431775 - MGP_CASTEiJ_P0091391 Cep295 protein_coding protein_coding MGP_CASTEiJ_T0091392.1 MGP_CASTEiJ_G0033375.1 mouse_genomes_project 9 12414685 12457293 - MGP_CASTEiJ_P0091392 Cep295 protein_coding protein_coding MGP_CASTEiJ_T0091393.1 MGP_CASTEiJ_G0033375.1 mouse_genomes_project 9 12414687 12431882 - Cep295 protein_coding retained_intron MGP_CASTEiJ_T0091394.1 MGP_CASTEiJ_G0033375.1 mouse_genomes_project 9 12414690 12440833 - Cep295 protein_coding retained_intron MGP_CASTEiJ_T0091395.1 MGP_CASTEiJ_G0033375.1 mouse_genomes_project 9 12414690 12457293 - MGP_CASTEiJ_P0091395 Cep295 protein_coding protein_coding MGP_CASTEiJ_T0091396.1 MGP_CASTEiJ_G0033375.1 mouse_genomes_project 9 12414870 12454217 - MGP_CASTEiJ_P0091396 Cep295 protein_coding protein_coding MGP_CASTEiJ_T0091397.1 MGP_CASTEiJ_G0033375.1 mouse_genomes_project 9 12415047 12415696 - Cep295 protein_coding retained_intron MGP_CASTEiJ_T0091398.1 MGP_CASTEiJ_G0033375.1 mouse_genomes_project 9 12421344 12424558 - MGP_CASTEiJ_P0091398 Cep295 protein_coding protein_coding MGP_CASTEiJ_T0091399.1 MGP_CASTEiJ_G0033375.1 mouse_genomes_project 9 12423911 12430361 - MGP_CASTEiJ_P0091399 Cep295 protein_coding protein_coding MGP_CASTEiJ_T0091400.1 MGP_CASTEiJ_G0033375.1 mouse_genomes_project 9 12423974 12425451 - Cep295 protein_coding retained_intron MGP_CASTEiJ_T0091401.1 MGP_CASTEiJ_G0033375.1 mouse_genomes_project 9 12443010 12450424 - Cep295 protein_coding processed_transcript MGP_CASTEiJ_T0091402.1 MGP_CASTEiJ_G0033375.1 mouse_genomes_project 9 12444202 12450954 - Cep295 protein_coding retained_intron MGP_CASTEiJ_T0091403.1 MGP_CASTEiJ_G0033375.1 mouse_genomes_project 9 12446107 12451335 - Cep295 protein_coding retained_intron MGP_CASTEiJ_T0095113.1 MGP_CASTEiJ_G0034344.1 mouse_genomes_project 9 111786086 111811220 - MGP_CASTEiJ_P0095113 Pth1r protein_coding protein_coding MGP_CASTEiJ_T0095114.1 MGP_CASTEiJ_G0034344.1 mouse_genomes_project 9 111786089 111807783 - MGP_CASTEiJ_P0095114 Pth1r protein_coding protein_coding MGP_CASTEiJ_T0095115.1 MGP_CASTEiJ_G0034344.1 mouse_genomes_project 9 111786141 111806803 - MGP_CASTEiJ_P0095115 Pth1r protein_coding protein_coding MGP_CASTEiJ_T0095116.1 MGP_CASTEiJ_G0034344.1 mouse_genomes_project 9 111791323 111811154 - MGP_CASTEiJ_P0095116 Pth1r protein_coding protein_coding MGP_CASTEiJ_T0095117.1 MGP_CASTEiJ_G0034344.1 mouse_genomes_project 9 111795873 111811243 - MGP_CASTEiJ_P0095117 Pth1r protein_coding protein_coding MGP_CASTEiJ_T0093823.1 MGP_CASTEiJ_G0034127.1 mouse_genomes_project 9 94682084 94704860 - MGP_CASTEiJ_P0093823 1190002N15Rik protein_coding protein_coding MGP_CASTEiJ_T0092726.1 MGP_CASTEiJ_G0033878.1 mouse_genomes_project 9 56853016 56879421 - MGP_CASTEiJ_P0092726 Csk protein_coding protein_coding MGP_CASTEiJ_T0091263.1 MGP_CASTEiJ_G0033337.1 mouse_genomes_project 9 4678351 4727032 + MGP_CASTEiJ_P0091263 Mmp20 protein_coding protein_coding MGP_CASTEiJ_T0005362.1 MGP_CASTEiJ_G0004536.1 mouse_genomes_project 9 97321234 97327312 + Gm16010 antisense antisense MGP_CASTEiJ_T0005363.1 MGP_CASTEiJ_G0004536.1 mouse_genomes_project 9 97322742 97323714 + Gm16010 antisense antisense MGP_CASTEiJ_T0015492.1 MGP_CASTEiJ_G0013655.1 mouse_genomes_project 9 88827474 88828947 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0092825.1 MGP_CASTEiJ_G0033903.1 mouse_genomes_project 9 58741320 58844248 - MGP_CASTEiJ_P0092825 Arih1 protein_coding protein_coding MGP_CASTEiJ_T0092826.1 MGP_CASTEiJ_G0033903.1 mouse_genomes_project 9 58746169 58844252 - MGP_CASTEiJ_P0092826 Arih1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092827.1 MGP_CASTEiJ_G0033903.1 mouse_genomes_project 9 58746350 58843981 - MGP_CASTEiJ_P0092827 Arih1 protein_coding protein_coding MGP_CASTEiJ_T0092828.1 MGP_CASTEiJ_G0033903.1 mouse_genomes_project 9 58748629 58759670 - MGP_CASTEiJ_P0092828 Arih1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092829.1 MGP_CASTEiJ_G0033903.1 mouse_genomes_project 9 58748714 58759928 - Arih1 protein_coding retained_intron MGP_CASTEiJ_T0092830.1 MGP_CASTEiJ_G0033903.1 mouse_genomes_project 9 58781042 58843690 - Arih1 protein_coding retained_intron MGP_CASTEiJ_T0092831.1 MGP_CASTEiJ_G0033903.1 mouse_genomes_project 9 58793299 58843717 - Arih1 protein_coding retained_intron MGP_CASTEiJ_T0093527.1 MGP_CASTEiJ_G0034071.1 mouse_genomes_project 9 78933693 78978345 - MGP_CASTEiJ_P0093527 Slc17a5 protein_coding protein_coding MGP_CASTEiJ_T0093528.1 MGP_CASTEiJ_G0034071.1 mouse_genomes_project 9 78933711 78978319 - MGP_CASTEiJ_P0093528 Slc17a5 protein_coding protein_coding MGP_CASTEiJ_T0093529.1 MGP_CASTEiJ_G0034071.1 mouse_genomes_project 9 78960052 78978331 - MGP_CASTEiJ_P0093529 Slc17a5 protein_coding protein_coding MGP_CASTEiJ_T0015504.1 MGP_CASTEiJ_G0013667.1 mouse_genomes_project 9 92748453 92748915 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101375.1 MGP_CASTEiJ_G0038288.1 mouse_genomes_project 9 42852221 42852340 - Gm26306 snoRNA snoRNA MGP_CASTEiJ_T0002284.1 MGP_CASTEiJ_G0002202.1 mouse_genomes_project 9 32430744 32448752 + TEC TEC MGP_CASTEiJ_T0101378.1 MGP_CASTEiJ_G0038291.1 mouse_genomes_project 9 51199708 51199841 + Gm25562 snoRNA snoRNA MGP_CASTEiJ_T0095566.1 MGP_CASTEiJ_G0034472.1 mouse_genomes_project 9 125756285 125825417 - MGP_CASTEiJ_P0095566 Fyco1 protein_coding protein_coding MGP_CASTEiJ_T0095567.1 MGP_CASTEiJ_G0034472.1 mouse_genomes_project 9 125756661 125825085 - MGP_CASTEiJ_P0095567 Fyco1 protein_coding protein_coding MGP_CASTEiJ_T0095569.1 MGP_CASTEiJ_G0034472.1 mouse_genomes_project 9 125801134 125825399 - MGP_CASTEiJ_P0095569 Fyco1 protein_coding protein_coding MGP_CASTEiJ_T0095570.1 MGP_CASTEiJ_G0034472.1 mouse_genomes_project 9 125811616 125825404 - Fyco1 protein_coding retained_intron MGP_CASTEiJ_T0092431.1 MGP_CASTEiJ_G0033785.1 mouse_genomes_project 9 49403522 49411350 + MGP_CASTEiJ_P0092431 Il18 protein_coding protein_coding MGP_CASTEiJ_T0092432.1 MGP_CASTEiJ_G0033785.1 mouse_genomes_project 9 49403522 49411350 + MGP_CASTEiJ_P0092432 Il18 protein_coding protein_coding MGP_CASTEiJ_T0095568.1 MGP_CASTEiJ_G0034473.1 mouse_genomes_project 9 125776155 125781414 + MGP_CASTEiJ_P0095568 Cxcr6 protein_coding protein_coding MGP_CASTEiJ_T0094686.1 MGP_CASTEiJ_G0034282.1 mouse_genomes_project 9 109118761 109188888 - MGP_CASTEiJ_P0094686 Dag1 protein_coding protein_coding MGP_CASTEiJ_T0094687.1 MGP_CASTEiJ_G0034282.1 mouse_genomes_project 9 109120070 109188745 - MGP_CASTEiJ_P0094687 Dag1 protein_coding protein_coding MGP_CASTEiJ_T0094688.1 MGP_CASTEiJ_G0034282.1 mouse_genomes_project 9 109120081 109188848 - MGP_CASTEiJ_P0094688 Dag1 protein_coding protein_coding MGP_CASTEiJ_T0094689.1 MGP_CASTEiJ_G0034282.1 mouse_genomes_project 9 109120084 109188666 - MGP_CASTEiJ_P0094689 Dag1 protein_coding protein_coding MGP_CASTEiJ_T0094690.1 MGP_CASTEiJ_G0034282.1 mouse_genomes_project 9 109134041 109188681 - MGP_CASTEiJ_P0094690 Dag1 protein_coding protein_coding MGP_CASTEiJ_T0094691.1 MGP_CASTEiJ_G0034282.1 mouse_genomes_project 9 109134079 109188639 - MGP_CASTEiJ_P0094691 Dag1 protein_coding protein_coding MGP_CASTEiJ_T0094692.1 MGP_CASTEiJ_G0034282.1 mouse_genomes_project 9 109173093 109188681 - Dag1 protein_coding retained_intron MGP_CASTEiJ_T0009079.1 MGP_CASTEiJ_G0007310.1 mouse_genomes_project 9 99102491 99169653 - E330023G01Rik lincRNA lincRNA MGP_CASTEiJ_T0092513.1 MGP_CASTEiJ_G0033800.1 mouse_genomes_project 9 49891470 49914544 - MGP_CASTEiJ_P0092513 Layn protein_coding unknown_likely_coding MGP_CASTEiJ_T0092514.1 MGP_CASTEiJ_G0033800.1 mouse_genomes_project 9 49893219 49914695 - MGP_CASTEiJ_P0092514 Layn protein_coding protein_coding MGP_CASTEiJ_T0093673.1 MGP_CASTEiJ_G0034095.1 mouse_genomes_project 9 87268963 87286062 - MGP_CASTEiJ_P0093673 Pgm3 protein_coding protein_coding MGP_CASTEiJ_T0093674.1 MGP_CASTEiJ_G0034095.1 mouse_genomes_project 9 87269580 87286063 - MGP_CASTEiJ_P0093674 Pgm3 protein_coding protein_coding MGP_CASTEiJ_T0093675.1 MGP_CASTEiJ_G0034095.1 mouse_genomes_project 9 87269842 87272473 - Pgm3 protein_coding retained_intron MGP_CASTEiJ_T0093676.1 MGP_CASTEiJ_G0034095.1 mouse_genomes_project 9 87270267 87286028 - Pgm3 protein_coding retained_intron MGP_CASTEiJ_T0093677.1 MGP_CASTEiJ_G0034095.1 mouse_genomes_project 9 87271055 87286077 - Pgm3 protein_coding retained_intron MGP_CASTEiJ_T0101374.1 MGP_CASTEiJ_G0038287.1 mouse_genomes_project 9 40643047 40643179 - Gm26272 snoRNA snoRNA MGP_CASTEiJ_T0100113.1 MGP_CASTEiJ_G0037026.1 mouse_genomes_project 9 28010918 28011025 - Gm26435 snRNA snRNA MGP_CASTEiJ_T0015532.1 MGP_CASTEiJ_G0013695.1 mouse_genomes_project 9 104003479 104003856 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002317.1 MGP_CASTEiJ_G0002235.1 mouse_genomes_project 9 77651485 77652502 - TEC TEC MGP_CASTEiJ_T0002367.1 MGP_CASTEiJ_G0002284.1 mouse_genomes_project 9 103688469 103690937 + TEC TEC MGP_CASTEiJ_T0091930.1 MGP_CASTEiJ_G0033565.1 mouse_genomes_project 9 35204723 35271393 - MGP_CASTEiJ_P0091930 Ccdc15 protein_coding protein_coding MGP_CASTEiJ_T0091931.1 MGP_CASTEiJ_G0033565.1 mouse_genomes_project 9 35205450 35271294 - MGP_CASTEiJ_P0091931 Ccdc15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0005330.1 MGP_CASTEiJ_G0004516.1 mouse_genomes_project 9 72741756 72744777 - Gm27241 antisense antisense MGP_CASTEiJ_T0005331.1 MGP_CASTEiJ_G0004516.1 mouse_genomes_project 9 72741890 72744949 - Gm27241 antisense antisense MGP_CASTEiJ_T0010766.1 MGP_CASTEiJ_G0008954.1 mouse_genomes_project 9 69411728 69411816 + Mir3109 miRNA miRNA MGP_CASTEiJ_T0092746.1 MGP_CASTEiJ_G0033886.1 mouse_genomes_project 9 57263736 57278979 + MGP_CASTEiJ_P0092746 Cyp11a1 protein_coding protein_coding MGP_CASTEiJ_T0092747.1 MGP_CASTEiJ_G0033886.1 mouse_genomes_project 9 57271915 57286556 + MGP_CASTEiJ_P0092747 Cyp11a1 protein_coding protein_coding MGP_CASTEiJ_T0092748.1 MGP_CASTEiJ_G0033886.1 mouse_genomes_project 9 57272241 57280623 + Cyp11a1 protein_coding retained_intron MGP_CASTEiJ_T0092749.1 MGP_CASTEiJ_G0033886.1 mouse_genomes_project 9 57275632 57284776 + MGP_CASTEiJ_P0092749 Cyp11a1 protein_coding protein_coding MGP_CASTEiJ_T0092562.1 MGP_CASTEiJ_G0033820.1 mouse_genomes_project 9 52653151 52676118 - MGP_CASTEiJ_P0092562 Rab39 protein_coding protein_coding MGP_CASTEiJ_T0005355.1 MGP_CASTEiJ_G0004532.1 mouse_genomes_project 9 96157522 96176420 - Gm16794 antisense antisense MGP_CASTEiJ_T0005356.1 MGP_CASTEiJ_G0004532.1 mouse_genomes_project 9 96158408 96171665 - Gm16794 antisense antisense MGP_CASTEiJ_T0005357.1 MGP_CASTEiJ_G0004532.1 mouse_genomes_project 9 96161216 96171674 - Gm16794 antisense antisense MGP_CASTEiJ_T0005358.1 MGP_CASTEiJ_G0004532.1 mouse_genomes_project 9 96161895 96172423 - Gm16794 antisense antisense MGP_CASTEiJ_T0100134.1 MGP_CASTEiJ_G0037047.1 mouse_genomes_project 9 66176065 66176167 - Gm23428 snRNA snRNA MGP_CASTEiJ_T0101402.1 MGP_CASTEiJ_G0038315.1 mouse_genomes_project 9 92659837 92659968 - Gm25417 snoRNA snoRNA MGP_CASTEiJ_T0100160.1 MGP_CASTEiJ_G0037073.1 mouse_genomes_project 9 104129375 104129478 - Gm26360 snRNA snRNA MGP_CASTEiJ_T0094355.1 MGP_CASTEiJ_G0034232.1 mouse_genomes_project 9 107330934 107332344 + MGP_CASTEiJ_P0094355 Iqcf5 protein_coding protein_coding MGP_CASTEiJ_T0002382.1 MGP_CASTEiJ_G0002299.1 mouse_genomes_project 9 109104133 109104863 - TEC TEC MGP_CASTEiJ_T0092150.1 MGP_CASTEiJ_G0033695.1 mouse_genomes_project 9 42534186 42550196 - MGP_CASTEiJ_P0092150 Gm9008 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092151.1 MGP_CASTEiJ_G0033695.1 mouse_genomes_project 9 42534198 42541435 - Gm9008 protein_coding processed_transcript MGP_CASTEiJ_T0092166.1 MGP_CASTEiJ_G0033695.1 mouse_genomes_project 9 42549114 42551832 - MGP_CASTEiJ_P0092166 Gm9008 protein_coding protein_coding MGP_CASTEiJ_T0092611.1 MGP_CASTEiJ_G0033840.1 mouse_genomes_project 9 54001933 54028166 + MGP_CASTEiJ_P0092611 Chrna5 protein_coding protein_coding MGP_CASTEiJ_T0092612.1 MGP_CASTEiJ_G0033840.1 mouse_genomes_project 9 54002669 54028593 + MGP_CASTEiJ_P0092612 Chrna5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0093754.1 MGP_CASTEiJ_G0034115.1 mouse_genomes_project 9 90135295 90146466 + MGP_CASTEiJ_P0093754 Ctsh protein_coding protein_coding MGP_CASTEiJ_T0093755.1 MGP_CASTEiJ_G0034115.1 mouse_genomes_project 9 90135421 90157605 + MGP_CASTEiJ_P0093755 Ctsh protein_coding protein_coding MGP_CASTEiJ_T0093756.1 MGP_CASTEiJ_G0034115.1 mouse_genomes_project 9 90135660 90157603 + Ctsh protein_coding retained_intron MGP_CASTEiJ_T0093757.1 MGP_CASTEiJ_G0034115.1 mouse_genomes_project 9 90135675 90136553 + Ctsh protein_coding retained_intron MGP_CASTEiJ_T0093758.1 MGP_CASTEiJ_G0034115.1 mouse_genomes_project 9 90135691 90145434 + MGP_CASTEiJ_P0093758 Ctsh protein_coding protein_coding MGP_CASTEiJ_T0093759.1 MGP_CASTEiJ_G0034115.1 mouse_genomes_project 9 90135692 90157603 + MGP_CASTEiJ_P0093759 Ctsh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093760.1 MGP_CASTEiJ_G0034115.1 mouse_genomes_project 9 90135708 90148386 + Ctsh protein_coding retained_intron MGP_CASTEiJ_T0093761.1 MGP_CASTEiJ_G0034115.1 mouse_genomes_project 9 90135713 90157257 + MGP_CASTEiJ_P0093761 Ctsh protein_coding protein_coding MGP_CASTEiJ_T0093762.1 MGP_CASTEiJ_G0034115.1 mouse_genomes_project 9 90141317 90142788 + Ctsh protein_coding retained_intron MGP_CASTEiJ_T0093763.1 MGP_CASTEiJ_G0034115.1 mouse_genomes_project 9 90143718 90152915 + Ctsh protein_coding retained_intron MGP_CASTEiJ_T0093764.1 MGP_CASTEiJ_G0034115.1 mouse_genomes_project 9 90152725 90157265 + Ctsh protein_coding retained_intron MGP_CASTEiJ_T0005405.1 MGP_CASTEiJ_G0004570.1 mouse_genomes_project 9 112075058 112076373 + 1700061E17Rik antisense antisense MGP_CASTEiJ_T0092813.1 MGP_CASTEiJ_G0033898.1 mouse_genomes_project 9 57957609 57964071 - Rec114 protein_coding processed_transcript MGP_CASTEiJ_T0092814.1 MGP_CASTEiJ_G0033898.1 mouse_genomes_project 9 57957637 57969052 - Rec114 protein_coding processed_transcript MGP_CASTEiJ_T0092815.1 MGP_CASTEiJ_G0033898.1 mouse_genomes_project 9 57957640 57965165 - MGP_CASTEiJ_P0092815 Rec114 protein_coding protein_coding MGP_CASTEiJ_T0092816.1 MGP_CASTEiJ_G0033898.1 mouse_genomes_project 9 57957701 58046727 - MGP_CASTEiJ_P0092816 Rec114 protein_coding protein_coding MGP_CASTEiJ_T0005285.1 MGP_CASTEiJ_G0004487.1 mouse_genomes_project 9 32815778 32828803 - Kirrel3os antisense antisense MGP_CASTEiJ_T0094195.1 MGP_CASTEiJ_G0034205.1 mouse_genomes_project 9 105775311 105801591 + MGP_CASTEiJ_P0094195 Mrpl3 protein_coding protein_coding MGP_CASTEiJ_T0094196.1 MGP_CASTEiJ_G0034205.1 mouse_genomes_project 9 105775311 105798170 + MGP_CASTEiJ_P0094196 Mrpl3 protein_coding protein_coding MGP_CASTEiJ_T0094197.1 MGP_CASTEiJ_G0034205.1 mouse_genomes_project 9 105775342 105783826 + MGP_CASTEiJ_P0094197 Mrpl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094198.1 MGP_CASTEiJ_G0034205.1 mouse_genomes_project 9 105775342 105777702 + MGP_CASTEiJ_P0094198 Mrpl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094199.1 MGP_CASTEiJ_G0034205.1 mouse_genomes_project 9 105775373 105799164 + MGP_CASTEiJ_P0094199 Mrpl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094200.1 MGP_CASTEiJ_G0034205.1 mouse_genomes_project 9 105792867 105795811 + Mrpl3 protein_coding retained_intron MGP_CASTEiJ_T0091943.1 MGP_CASTEiJ_G0033569.1 mouse_genomes_project 9 35417157 35455058 + MGP_CASTEiJ_P0091943 Msantd2 protein_coding protein_coding MGP_CASTEiJ_T0002379.1 MGP_CASTEiJ_G0002296.1 mouse_genomes_project 9 108495678 108497436 - TEC TEC MGP_CASTEiJ_T0008997.1 MGP_CASTEiJ_G0007246.1 mouse_genomes_project 9 38703685 38706153 + Gm17540 lincRNA lincRNA MGP_CASTEiJ_T0094006.1 MGP_CASTEiJ_G0034168.1 mouse_genomes_project 9 100039950 100048219 + MGP_CASTEiJ_P0094006 Dzip1l protein_coding protein_coding MGP_CASTEiJ_T0094007.1 MGP_CASTEiJ_G0034168.1 mouse_genomes_project 9 100039996 100083952 + MGP_CASTEiJ_P0094007 Dzip1l protein_coding protein_coding MGP_CASTEiJ_T0094008.1 MGP_CASTEiJ_G0034168.1 mouse_genomes_project 9 100040032 100083952 + MGP_CASTEiJ_P0094008 Dzip1l protein_coding protein_coding MGP_CASTEiJ_T0094009.1 MGP_CASTEiJ_G0034168.1 mouse_genomes_project 9 100040297 100083952 + MGP_CASTEiJ_P0094009 Dzip1l protein_coding protein_coding MGP_CASTEiJ_T0094010.1 MGP_CASTEiJ_G0034168.1 mouse_genomes_project 9 100045285 100083858 + MGP_CASTEiJ_P0094010 Dzip1l protein_coding protein_coding MGP_CASTEiJ_T0094011.1 MGP_CASTEiJ_G0034168.1 mouse_genomes_project 9 100057335 100065683 + Dzip1l protein_coding processed_transcript MGP_CASTEiJ_T0094012.1 MGP_CASTEiJ_G0034168.1 mouse_genomes_project 9 100064741 100068432 + Dzip1l protein_coding retained_intron MGP_CASTEiJ_T0002286.1 MGP_CASTEiJ_G0002204.1 mouse_genomes_project 9 33735886 33736950 + TEC TEC MGP_CASTEiJ_T0092873.1 MGP_CASTEiJ_G0033914.1 mouse_genomes_project 9 59986630 60106161 - MGP_CASTEiJ_P0092873 Lrrc49 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092874.1 MGP_CASTEiJ_G0033914.1 mouse_genomes_project 9 59986943 60067789 - MGP_CASTEiJ_P0092874 Lrrc49 protein_coding protein_coding MGP_CASTEiJ_T0092875.1 MGP_CASTEiJ_G0033914.1 mouse_genomes_project 9 60005628 60106195 - MGP_CASTEiJ_P0092875 Lrrc49 protein_coding protein_coding MGP_CASTEiJ_T0092876.1 MGP_CASTEiJ_G0033914.1 mouse_genomes_project 9 60005628 60106155 - MGP_CASTEiJ_P0092876 Lrrc49 protein_coding protein_coding MGP_CASTEiJ_T0092877.1 MGP_CASTEiJ_G0033914.1 mouse_genomes_project 9 60005636 60105569 - MGP_CASTEiJ_P0092877 Lrrc49 protein_coding protein_coding MGP_CASTEiJ_T0092878.1 MGP_CASTEiJ_G0033914.1 mouse_genomes_project 9 60005636 60105569 - MGP_CASTEiJ_P0092878 Lrrc49 protein_coding protein_coding MGP_CASTEiJ_T0092879.1 MGP_CASTEiJ_G0033914.1 mouse_genomes_project 9 60005976 60106023 - MGP_CASTEiJ_P0092879 Lrrc49 protein_coding unknown_likely_coding MGP_CASTEiJ_T0092880.1 MGP_CASTEiJ_G0033914.1 mouse_genomes_project 9 60006165 60018105 - Lrrc49 protein_coding retained_intron MGP_CASTEiJ_T0092881.1 MGP_CASTEiJ_G0033914.1 mouse_genomes_project 9 60029326 60105938 - Lrrc49 protein_coding retained_intron MGP_CASTEiJ_T0092882.1 MGP_CASTEiJ_G0033914.1 mouse_genomes_project 9 60029879 60067698 - Lrrc49 protein_coding processed_transcript MGP_CASTEiJ_T0092883.1 MGP_CASTEiJ_G0033914.1 mouse_genomes_project 9 60098752 60105707 - MGP_CASTEiJ_P0092883 Lrrc49 protein_coding protein_coding MGP_CASTEiJ_T0091978.1 MGP_CASTEiJ_G0033593.1 mouse_genomes_project 9 36171438 36172380 + MGP_CASTEiJ_P0091978 Olfr893 protein_coding protein_coding MGP_CASTEiJ_T0092946.1 MGP_CASTEiJ_G0033930.1 mouse_genomes_project 9 62438596 62544713 - MGP_CASTEiJ_P0092946 Pias1 protein_coding protein_coding MGP_CASTEiJ_T0002393.1 MGP_CASTEiJ_G0002310.1 mouse_genomes_project 9 111412450 111416703 - TEC TEC MGP_CASTEiJ_T0091460.1 MGP_CASTEiJ_G0033409.1 mouse_genomes_project 9 16979640 16983688 + MGP_CASTEiJ_P0091460 protein_coding protein_coding MGP_CASTEiJ_T0092800.1 MGP_CASTEiJ_G0033897.1 mouse_genomes_project 9 57884630 57956077 + MGP_CASTEiJ_P0092800 Nptn protein_coding protein_coding MGP_CASTEiJ_T0092801.1 MGP_CASTEiJ_G0033897.1 mouse_genomes_project 9 57884682 57957638 + MGP_CASTEiJ_P0092801 Nptn protein_coding protein_coding MGP_CASTEiJ_T0092802.1 MGP_CASTEiJ_G0033897.1 mouse_genomes_project 9 57884764 57945412 + MGP_CASTEiJ_P0092802 Nptn protein_coding non_stop_decay MGP_CASTEiJ_T0092803.1 MGP_CASTEiJ_G0033897.1 mouse_genomes_project 9 57884796 57957638 + MGP_CASTEiJ_P0092803 Nptn protein_coding protein_coding MGP_CASTEiJ_T0092804.1 MGP_CASTEiJ_G0033897.1 mouse_genomes_project 9 57884797 57948543 + MGP_CASTEiJ_P0092804 Nptn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092805.1 MGP_CASTEiJ_G0033897.1 mouse_genomes_project 9 57884797 57956077 + MGP_CASTEiJ_P0092805 Nptn protein_coding protein_coding MGP_CASTEiJ_T0092806.1 MGP_CASTEiJ_G0033897.1 mouse_genomes_project 9 57884826 57956077 + MGP_CASTEiJ_P0092806 Nptn protein_coding protein_coding MGP_CASTEiJ_T0092807.1 MGP_CASTEiJ_G0033897.1 mouse_genomes_project 9 57884831 57956722 + MGP_CASTEiJ_P0092807 Nptn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092808.1 MGP_CASTEiJ_G0033897.1 mouse_genomes_project 9 57884834 57948405 + Nptn protein_coding processed_transcript MGP_CASTEiJ_T0092809.1 MGP_CASTEiJ_G0033897.1 mouse_genomes_project 9 57933807 57962697 + MGP_CASTEiJ_P0092809 Nptn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092810.1 MGP_CASTEiJ_G0033897.1 mouse_genomes_project 9 57933808 57959967 + MGP_CASTEiJ_P0092810 Nptn protein_coding protein_coding MGP_CASTEiJ_T0092811.1 MGP_CASTEiJ_G0033897.1 mouse_genomes_project 9 57954954 57956817 + Nptn protein_coding retained_intron MGP_CASTEiJ_T0092812.1 MGP_CASTEiJ_G0033897.1 mouse_genomes_project 9 57956735 57957578 + Nptn protein_coding processed_transcript MGP_CASTEiJ_T0091453.1 MGP_CASTEiJ_G0033402.1 mouse_genomes_project 9 16685667 16686606 + MGP_CASTEiJ_P0091453 Olfr851 protein_coding protein_coding MGP_CASTEiJ_T0101391.1 MGP_CASTEiJ_G0038304.1 mouse_genomes_project 9 70503641 70503757 + Gm24615 snoRNA snoRNA MGP_CASTEiJ_T0091734.1 MGP_CASTEiJ_G0033513.1 mouse_genomes_project 9 24989328 24994226 + MGP_CASTEiJ_P0091734 Spata19 protein_coding protein_coding MGP_CASTEiJ_T0094826.1 MGP_CASTEiJ_G0034303.1 mouse_genomes_project 9 109553252 109582120 - MGP_CASTEiJ_P0094826 Arih2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0094827.1 MGP_CASTEiJ_G0034303.1 mouse_genomes_project 9 109553255 109602446 - MGP_CASTEiJ_P0094827 Arih2 protein_coding protein_coding MGP_CASTEiJ_T0094828.1 MGP_CASTEiJ_G0034303.1 mouse_genomes_project 9 109553260 109556959 - Arih2 protein_coding retained_intron MGP_CASTEiJ_T0094829.1 MGP_CASTEiJ_G0034303.1 mouse_genomes_project 9 109555016 109602451 - MGP_CASTEiJ_P0094829 Arih2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094830.1 MGP_CASTEiJ_G0034303.1 mouse_genomes_project 9 109555138 109559015 - MGP_CASTEiJ_P0094830 Arih2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094831.1 MGP_CASTEiJ_G0034303.1 mouse_genomes_project 9 109555272 109557700 - Arih2 protein_coding retained_intron MGP_CASTEiJ_T0094832.1 MGP_CASTEiJ_G0034303.1 mouse_genomes_project 9 109555603 109558306 - Arih2 protein_coding retained_intron MGP_CASTEiJ_T0094833.1 MGP_CASTEiJ_G0034303.1 mouse_genomes_project 9 109560219 109602452 - MGP_CASTEiJ_P0094833 Arih2 protein_coding protein_coding MGP_CASTEiJ_T0094834.1 MGP_CASTEiJ_G0034303.1 mouse_genomes_project 9 109560303 109594646 - MGP_CASTEiJ_P0094834 Arih2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094835.1 MGP_CASTEiJ_G0034303.1 mouse_genomes_project 9 109564994 109580055 - Arih2 protein_coding retained_intron MGP_CASTEiJ_T0094836.1 MGP_CASTEiJ_G0034303.1 mouse_genomes_project 9 109565994 109602384 - Arih2 protein_coding retained_intron MGP_CASTEiJ_T0094837.1 MGP_CASTEiJ_G0034303.1 mouse_genomes_project 9 109567012 109602408 - MGP_CASTEiJ_P0094837 Arih2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094838.1 MGP_CASTEiJ_G0034303.1 mouse_genomes_project 9 109595973 109602435 - Arih2 protein_coding retained_intron MGP_CASTEiJ_T0093187.1 MGP_CASTEiJ_G0033995.1 mouse_genomes_project 9 69349954 69388011 + MGP_CASTEiJ_P0093187 Ice2 protein_coding protein_coding MGP_CASTEiJ_T0093188.1 MGP_CASTEiJ_G0033995.1 mouse_genomes_project 9 69349971 69386960 + Ice2 protein_coding retained_intron MGP_CASTEiJ_T0093189.1 MGP_CASTEiJ_G0033995.1 mouse_genomes_project 9 69349975 69360144 + MGP_CASTEiJ_P0093189 Ice2 protein_coding protein_coding MGP_CASTEiJ_T0093190.1 MGP_CASTEiJ_G0033995.1 mouse_genomes_project 9 69349981 69360518 + MGP_CASTEiJ_P0093190 Ice2 protein_coding protein_coding MGP_CASTEiJ_T0093191.1 MGP_CASTEiJ_G0033995.1 mouse_genomes_project 9 69349983 69360156 + MGP_CASTEiJ_P0093191 Ice2 protein_coding protein_coding MGP_CASTEiJ_T0093192.1 MGP_CASTEiJ_G0033995.1 mouse_genomes_project 9 69349985 69360775 + MGP_CASTEiJ_P0093192 Ice2 protein_coding protein_coding MGP_CASTEiJ_T0093193.1 MGP_CASTEiJ_G0033995.1 mouse_genomes_project 9 69350005 69362988 + MGP_CASTEiJ_P0093193 Ice2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093194.1 MGP_CASTEiJ_G0033995.1 mouse_genomes_project 9 69350696 69360003 + Ice2 protein_coding retained_intron MGP_CASTEiJ_T0093195.1 MGP_CASTEiJ_G0033995.1 mouse_genomes_project 9 69369400 69378454 + Ice2 protein_coding processed_transcript MGP_CASTEiJ_T0093196.1 MGP_CASTEiJ_G0033995.1 mouse_genomes_project 9 69369558 69379772 + Ice2 protein_coding retained_intron MGP_CASTEiJ_T0091926.1 MGP_CASTEiJ_G0033563.1 mouse_genomes_project 9 35127202 35142997 + MGP_CASTEiJ_P0091926 Tmem218 protein_coding protein_coding MGP_CASTEiJ_T0100127.1 MGP_CASTEiJ_G0037040.1 mouse_genomes_project 9 54610053 54610145 - Gm23407 snRNA snRNA MGP_CASTEiJ_T0091976.1 MGP_CASTEiJ_G0033591.1 mouse_genomes_project 9 36105193 36106138 + MGP_CASTEiJ_P0091976 Olfr890 protein_coding protein_coding MGP_CASTEiJ_T0093433.1 MGP_CASTEiJ_G0034040.1 mouse_genomes_project 9 75526516 75562298 + MGP_CASTEiJ_P0093433 Gnb5 protein_coding protein_coding MGP_CASTEiJ_T0008976.1 MGP_CASTEiJ_G0007227.1 mouse_genomes_project 9 18373039 18376512 - Gm26592 lincRNA lincRNA MGP_CASTEiJ_T0098414.1 MGP_CASTEiJ_G0035345.1 mouse_genomes_project 9 16169503 16169772 - pseudogene pseudogene MGP_CASTEiJ_T0092047.1 MGP_CASTEiJ_G0033650.1 mouse_genomes_project 9 37953468 37954495 - MGP_CASTEiJ_P0092047 protein_coding protein_coding MGP_CASTEiJ_T0095314.1 MGP_CASTEiJ_G0034393.1 mouse_genomes_project 9 120123867 120131031 + MGP_CASTEiJ_P0095314 Eomes protein_coding protein_coding MGP_CASTEiJ_T0095315.1 MGP_CASTEiJ_G0034393.1 mouse_genomes_project 9 120123999 120131792 + MGP_CASTEiJ_P0095315 Eomes protein_coding protein_coding MGP_CASTEiJ_T0095316.1 MGP_CASTEiJ_G0034393.1 mouse_genomes_project 9 120124530 120128437 + MGP_CASTEiJ_P0095316 Eomes protein_coding protein_coding MGP_CASTEiJ_T0095317.1 MGP_CASTEiJ_G0034393.1 mouse_genomes_project 9 120124563 120131025 + MGP_CASTEiJ_P0095317 Eomes protein_coding unknown_likely_coding MGP_CASTEiJ_T0093005.1 MGP_CASTEiJ_G0033946.1 mouse_genomes_project 9 64049485 64374681 + MGP_CASTEiJ_P0093005 Megf11 protein_coding protein_coding MGP_CASTEiJ_T0093006.1 MGP_CASTEiJ_G0033946.1 mouse_genomes_project 9 64049485 64382947 + MGP_CASTEiJ_P0093006 Megf11 protein_coding protein_coding MGP_CASTEiJ_T0093007.1 MGP_CASTEiJ_G0033946.1 mouse_genomes_project 9 64049485 64381032 + MGP_CASTEiJ_P0093007 Megf11 protein_coding protein_coding MGP_CASTEiJ_T0093008.1 MGP_CASTEiJ_G0033946.1 mouse_genomes_project 9 64049542 64321414 + Megf11 protein_coding retained_intron MGP_CASTEiJ_T0093009.1 MGP_CASTEiJ_G0033946.1 mouse_genomes_project 9 64049545 64382947 + MGP_CASTEiJ_P0093009 Megf11 protein_coding protein_coding MGP_CASTEiJ_T0093010.1 MGP_CASTEiJ_G0033946.1 mouse_genomes_project 9 64162569 64172377 + Megf11 protein_coding processed_transcript MGP_CASTEiJ_T0093011.1 MGP_CASTEiJ_G0033946.1 mouse_genomes_project 9 64162834 64361459 + Megf11 protein_coding retained_intron MGP_CASTEiJ_T0093012.1 MGP_CASTEiJ_G0033946.1 mouse_genomes_project 9 64210375 64309979 + Megf11 protein_coding processed_transcript MGP_CASTEiJ_T0093013.1 MGP_CASTEiJ_G0033946.1 mouse_genomes_project 9 64333234 64366108 + MGP_CASTEiJ_P0093013 Megf11 protein_coding protein_coding MGP_CASTEiJ_T0093014.1 MGP_CASTEiJ_G0033946.1 mouse_genomes_project 9 64367484 64379676 + Megf11 protein_coding processed_transcript MGP_CASTEiJ_T0091970.1 MGP_CASTEiJ_G0033586.1 mouse_genomes_project 9 36000327 36001900 + MGP_CASTEiJ_P0091970 Olfr884 protein_coding protein_coding MGP_CASTEiJ_T0091971.1 MGP_CASTEiJ_G0033586.1 mouse_genomes_project 9 36000970 36001900 + MGP_CASTEiJ_P0091971 Olfr884 protein_coding protein_coding MGP_CASTEiJ_T0091873.1 MGP_CASTEiJ_G0033553.1 mouse_genomes_project 9 34383061 34384637 + MGP_CASTEiJ_P0091873 Gm9513 protein_coding protein_coding MGP_CASTEiJ_T0101418.1 MGP_CASTEiJ_G0038331.1 mouse_genomes_project 9 121030657 121030786 - Gm22729 snoRNA snoRNA MGP_CASTEiJ_T0017825.1 MGP_CASTEiJ_G0015072.1 mouse_genomes_project 9 104017503 104058487 + 5830418P13Rik processed_transcript antisense MGP_CASTEiJ_T0017826.1 MGP_CASTEiJ_G0015072.1 mouse_genomes_project 9 104018905 104020015 + 5830418P13Rik processed_transcript retained_intron MGP_CASTEiJ_T0017827.1 MGP_CASTEiJ_G0015072.1 mouse_genomes_project 9 104018929 104021527 + 5830418P13Rik processed_transcript antisense MGP_CASTEiJ_T0095517.1 MGP_CASTEiJ_G0034456.1 mouse_genomes_project 9 124859550 124865453 - MGP_CASTEiJ_P0095517 1110059G10Rik protein_coding protein_coding MGP_CASTEiJ_T0095518.1 MGP_CASTEiJ_G0034456.1 mouse_genomes_project 9 124861988 124865406 - MGP_CASTEiJ_P0095518 1110059G10Rik protein_coding protein_coding MGP_CASTEiJ_T0091905.1 MGP_CASTEiJ_G0033561.1 mouse_genomes_project 9 34699962 34732871 + MGP_CASTEiJ_P0091905 Fez1 protein_coding protein_coding MGP_CASTEiJ_T0091906.1 MGP_CASTEiJ_G0033561.1 mouse_genomes_project 9 34710743 34763007 + MGP_CASTEiJ_P0091906 Fez1 protein_coding protein_coding MGP_CASTEiJ_T0091907.1 MGP_CASTEiJ_G0033561.1 mouse_genomes_project 9 34710854 34826071 + MGP_CASTEiJ_P0091907 Fez1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091908.1 MGP_CASTEiJ_G0033561.1 mouse_genomes_project 9 34711705 34746057 + MGP_CASTEiJ_P0091908 Fez1 protein_coding protein_coding MGP_CASTEiJ_T0091909.1 MGP_CASTEiJ_G0033561.1 mouse_genomes_project 9 34724233 34762723 + MGP_CASTEiJ_P0091909 Fez1 protein_coding protein_coding MGP_CASTEiJ_T0091910.1 MGP_CASTEiJ_G0033561.1 mouse_genomes_project 9 34724352 34750421 + MGP_CASTEiJ_P0091910 Fez1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0091911.1 MGP_CASTEiJ_G0033561.1 mouse_genomes_project 9 34751518 34753394 + MGP_CASTEiJ_P0091911 Fez1 protein_coding protein_coding MGP_CASTEiJ_T0091912.1 MGP_CASTEiJ_G0033561.1 mouse_genomes_project 9 34752743 34762883 + Fez1 protein_coding retained_intron MGP_CASTEiJ_T0091913.1 MGP_CASTEiJ_G0033561.1 mouse_genomes_project 9 34753143 34763003 + MGP_CASTEiJ_P0091913 Fez1 protein_coding protein_coding MGP_CASTEiJ_T0015421.1 MGP_CASTEiJ_G0013584.1 mouse_genomes_project 9 22656418 22656496 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0091743.1 MGP_CASTEiJ_G0033515.1 mouse_genomes_project 9 26660373 27675758 - MGP_CASTEiJ_P0091743 Ntm protein_coding protein_coding MGP_CASTEiJ_T0091744.1 MGP_CASTEiJ_G0033515.1 mouse_genomes_project 9 26663543 27099012 - MGP_CASTEiJ_P0091744 Ntm protein_coding protein_coding MGP_CASTEiJ_T0091745.1 MGP_CASTEiJ_G0033515.1 mouse_genomes_project 9 26663762 26681749 - MGP_CASTEiJ_P0091745 Ntm protein_coding protein_coding MGP_CASTEiJ_T0091746.1 MGP_CASTEiJ_G0033515.1 mouse_genomes_project 9 26664024 26681749 - MGP_CASTEiJ_P0091746 Ntm protein_coding protein_coding MGP_CASTEiJ_T0091747.1 MGP_CASTEiJ_G0033515.1 mouse_genomes_project 9 26676583 27098544 - MGP_CASTEiJ_P0091747 Ntm protein_coding protein_coding MGP_CASTEiJ_T0091748.1 MGP_CASTEiJ_G0033515.1 mouse_genomes_project 9 26676709 26860238 - Ntm protein_coding processed_transcript MGP_CASTEiJ_T0091749.1 MGP_CASTEiJ_G0033515.1 mouse_genomes_project 9 26676732 26781052 - Ntm protein_coding processed_transcript MGP_CASTEiJ_T0091750.1 MGP_CASTEiJ_G0033515.1 mouse_genomes_project 9 26680720 27675759 - Ntm protein_coding retained_intron MGP_CASTEiJ_T0091751.1 MGP_CASTEiJ_G0033515.1 mouse_genomes_project 9 26851020 27675759 - Ntm protein_coding retained_intron MGP_CASTEiJ_T0091752.1 MGP_CASTEiJ_G0033515.1 mouse_genomes_project 9 27098395 27675748 - Ntm protein_coding processed_transcript MGP_CASTEiJ_T0091753.1 MGP_CASTEiJ_G0033515.1 mouse_genomes_project 9 27654586 27675770 - Ntm protein_coding processed_transcript MGP_CASTEiJ_T0010746.1 MGP_CASTEiJ_G0008934.1 mouse_genomes_project 9 40776354 40776423 + Gm44311 miRNA miRNA MGP_CASTEiJ_T0101839.1 MGP_CASTEiJ_G0038592.1 mouse_genomes_project 9 119494909 119619335 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101840.1 MGP_CASTEiJ_G0038592.1 mouse_genomes_project 9 119530269 119619497 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101841.1 MGP_CASTEiJ_G0038592.1 mouse_genomes_project 9 119577518 119619497 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0101842.1 MGP_CASTEiJ_G0038592.1 mouse_genomes_project 9 119618158 119653131 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0091443.1 MGP_CASTEiJ_G0033392.1 mouse_genomes_project 9 16078066 16080171 + MGP_CASTEiJ_P0091443 Olfr830 protein_coding protein_coding MGP_CASTEiJ_T0091466.1 MGP_CASTEiJ_G0033415.1 mouse_genomes_project 9 17314156 17315233 - MGP_CASTEiJ_P0091466 Olfr866 protein_coding protein_coding MGP_CASTEiJ_T0095088.1 MGP_CASTEiJ_G0034341.1 mouse_genomes_project 9 111683818 111687128 - MGP_CASTEiJ_P0095088 Nradd protein_coding protein_coding MGP_CASTEiJ_T0095089.1 MGP_CASTEiJ_G0034341.1 mouse_genomes_project 9 111684191 111686005 - MGP_CASTEiJ_P0095089 Nradd protein_coding protein_coding MGP_CASTEiJ_T0095090.1 MGP_CASTEiJ_G0034341.1 mouse_genomes_project 9 111684567 111687054 - MGP_CASTEiJ_P0095090 Nradd protein_coding protein_coding MGP_CASTEiJ_T0095091.1 MGP_CASTEiJ_G0034341.1 mouse_genomes_project 9 111685262 111687107 - Nradd protein_coding retained_intron MGP_CASTEiJ_T0092016.1 MGP_CASTEiJ_G0033625.1 mouse_genomes_project 9 37014628 37015555 - MGP_CASTEiJ_P0092016 Olfr935 protein_coding protein_coding MGP_CASTEiJ_T0091446.1 MGP_CASTEiJ_G0033395.1 mouse_genomes_project 9 16226807 16227743 + MGP_CASTEiJ_P0091446 Olfr835 protein_coding protein_coding MGP_CASTEiJ_T0095488.1 MGP_CASTEiJ_G0034445.1 mouse_genomes_project 9 123871503 123901547 + MGP_CASTEiJ_P0095488 Fam198a protein_coding protein_coding MGP_CASTEiJ_T0093407.1 MGP_CASTEiJ_G0034037.1 mouse_genomes_project 9 75234471 75258608 + MGP_CASTEiJ_P0093407 Arpp19 protein_coding protein_coding MGP_CASTEiJ_T0093408.1 MGP_CASTEiJ_G0034037.1 mouse_genomes_project 9 75234471 75258589 + MGP_CASTEiJ_P0093408 Arpp19 protein_coding protein_coding MGP_CASTEiJ_T0093409.1 MGP_CASTEiJ_G0034037.1 mouse_genomes_project 9 75234534 75235331 + Arpp19 protein_coding retained_intron MGP_CASTEiJ_T0093410.1 MGP_CASTEiJ_G0034037.1 mouse_genomes_project 9 75234534 75255129 + MGP_CASTEiJ_P0093410 Arpp19 protein_coding protein_coding MGP_CASTEiJ_T0093411.1 MGP_CASTEiJ_G0034037.1 mouse_genomes_project 9 75234536 75256002 + MGP_CASTEiJ_P0093411 Arpp19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093412.1 MGP_CASTEiJ_G0034037.1 mouse_genomes_project 9 75234575 75258608 + MGP_CASTEiJ_P0093412 Arpp19 protein_coding protein_coding MGP_CASTEiJ_T0093413.1 MGP_CASTEiJ_G0034037.1 mouse_genomes_project 9 75234606 75255184 + MGP_CASTEiJ_P0093413 Arpp19 protein_coding protein_coding MGP_CASTEiJ_T0093414.1 MGP_CASTEiJ_G0034037.1 mouse_genomes_project 9 75234676 75255113 + MGP_CASTEiJ_P0093414 Arpp19 protein_coding protein_coding MGP_CASTEiJ_T0093415.1 MGP_CASTEiJ_G0034037.1 mouse_genomes_project 9 75234774 75255096 + MGP_CASTEiJ_P0093415 Arpp19 protein_coding protein_coding MGP_CASTEiJ_T0093416.1 MGP_CASTEiJ_G0034037.1 mouse_genomes_project 9 75248594 75255675 + MGP_CASTEiJ_P0093416 Arpp19 protein_coding protein_coding MGP_CASTEiJ_T0093417.1 MGP_CASTEiJ_G0034037.1 mouse_genomes_project 9 75248668 75256369 + MGP_CASTEiJ_P0093417 Arpp19 protein_coding protein_coding MGP_CASTEiJ_T0015450.1 MGP_CASTEiJ_G0013613.1 mouse_genomes_project 9 70914445 70915288 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0094025.1 MGP_CASTEiJ_G0034172.1 mouse_genomes_project 9 100939096 100997786 - MGP_CASTEiJ_P0094025 Nck1 protein_coding protein_coding MGP_CASTEiJ_T0094026.1 MGP_CASTEiJ_G0034172.1 mouse_genomes_project 9 100943389 100956445 - MGP_CASTEiJ_P0094026 Nck1 protein_coding protein_coding MGP_CASTEiJ_T0094027.1 MGP_CASTEiJ_G0034172.1 mouse_genomes_project 9 100945970 100997774 - MGP_CASTEiJ_P0094027 Nck1 protein_coding protein_coding MGP_CASTEiJ_T0094028.1 MGP_CASTEiJ_G0034172.1 mouse_genomes_project 9 100946193 100997383 - MGP_CASTEiJ_P0094028 Nck1 protein_coding protein_coding MGP_CASTEiJ_T0093418.1 MGP_CASTEiJ_G0034038.1 mouse_genomes_project 9 75269217 75321684 + Myo5a protein_coding retained_intron MGP_CASTEiJ_T0093419.1 MGP_CASTEiJ_G0034038.1 mouse_genomes_project 9 75269384 75433380 + MGP_CASTEiJ_P0093419 Myo5a protein_coding protein_coding MGP_CASTEiJ_T0093420.1 MGP_CASTEiJ_G0034038.1 mouse_genomes_project 9 75269402 75335258 + Myo5a protein_coding retained_intron MGP_CASTEiJ_T0093421.1 MGP_CASTEiJ_G0034038.1 mouse_genomes_project 9 75269582 75428244 + MGP_CASTEiJ_P0093421 Myo5a protein_coding protein_coding MGP_CASTEiJ_T0093422.1 MGP_CASTEiJ_G0034038.1 mouse_genomes_project 9 75269761 75386145 + MGP_CASTEiJ_P0093422 Myo5a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093423.1 MGP_CASTEiJ_G0034038.1 mouse_genomes_project 9 75269796 75428647 + MGP_CASTEiJ_P0093423 Myo5a protein_coding protein_coding MGP_CASTEiJ_T0093424.1 MGP_CASTEiJ_G0034038.1 mouse_genomes_project 9 75349465 75356129 + Myo5a protein_coding retained_intron MGP_CASTEiJ_T0093425.1 MGP_CASTEiJ_G0034038.1 mouse_genomes_project 9 75393727 75428178 + Myo5a protein_coding processed_transcript MGP_CASTEiJ_T0093426.1 MGP_CASTEiJ_G0034038.1 mouse_genomes_project 9 75393790 75403661 + Myo5a protein_coding retained_intron MGP_CASTEiJ_T0093427.1 MGP_CASTEiJ_G0034038.1 mouse_genomes_project 9 75395439 75405757 + MGP_CASTEiJ_P0093427 Myo5a protein_coding protein_coding MGP_CASTEiJ_T0093428.1 MGP_CASTEiJ_G0034038.1 mouse_genomes_project 9 75395538 75427687 + MGP_CASTEiJ_P0093428 Myo5a protein_coding protein_coding MGP_CASTEiJ_T0093429.1 MGP_CASTEiJ_G0034038.1 mouse_genomes_project 9 75395540 75410794 + MGP_CASTEiJ_P0093429 Myo5a protein_coding protein_coding MGP_CASTEiJ_T0093430.1 MGP_CASTEiJ_G0034038.1 mouse_genomes_project 9 75399506 75402569 + Myo5a protein_coding retained_intron MGP_CASTEiJ_T0093431.1 MGP_CASTEiJ_G0034038.1 mouse_genomes_project 9 75403333 75413202 + Myo5a protein_coding retained_intron MGP_CASTEiJ_T0093572.1 MGP_CASTEiJ_G0034079.1 mouse_genomes_project 9 80816891 80962311 - MGP_CASTEiJ_P0093572 Impg1 protein_coding protein_coding MGP_CASTEiJ_T0093573.1 MGP_CASTEiJ_G0034079.1 mouse_genomes_project 9 80817518 80962354 - MGP_CASTEiJ_P0093573 Impg1 protein_coding protein_coding MGP_CASTEiJ_T0093574.1 MGP_CASTEiJ_G0034079.1 mouse_genomes_project 9 80896331 80962311 - MGP_CASTEiJ_P0093574 Impg1 protein_coding protein_coding MGP_CASTEiJ_T0091295.1 MGP_CASTEiJ_G0033347.1 mouse_genomes_project 9 5896257 5968804 + MGP_CASTEiJ_P0091295 Pgr protein_coding protein_coding MGP_CASTEiJ_T0091296.1 MGP_CASTEiJ_G0033347.1 mouse_genomes_project 9 5896843 5948809 + Pgr protein_coding retained_intron MGP_CASTEiJ_T0091297.1 MGP_CASTEiJ_G0033347.1 mouse_genomes_project 9 5896892 5965600 + MGP_CASTEiJ_P0091297 Pgr protein_coding protein_coding MGP_CASTEiJ_T0091574.1 MGP_CASTEiJ_G0033454.1 mouse_genomes_project 9 18673750 18713832 + MGP_CASTEiJ_P0091574 Slc44a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0091575.1 MGP_CASTEiJ_G0033454.1 mouse_genomes_project 9 18692935 18713825 + MGP_CASTEiJ_P0091575 Slc44a2 protein_coding protein_coding MGP_CASTEiJ_T0101837.1 MGP_CASTEiJ_G0038591.1 mouse_genomes_project 9 99857753 99872506 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0101838.1 MGP_CASTEiJ_G0038591.1 mouse_genomes_project 9 99871994 99876284 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0093448.1 MGP_CASTEiJ_G0034048.1 mouse_genomes_project 9 75884357 75929721 - MGP_CASTEiJ_P0093448 Scg3 protein_coding protein_coding MGP_CASTEiJ_T0005390.1 MGP_CASTEiJ_G0004558.1 mouse_genomes_project 9 108419721 108429323 - Gm9917 antisense antisense MGP_CASTEiJ_T0005391.1 MGP_CASTEiJ_G0004558.1 mouse_genomes_project 9 108423760 108429326 - Gm9917 antisense antisense MGP_CASTEiJ_T0005392.1 MGP_CASTEiJ_G0004558.1 mouse_genomes_project 9 108424665 108427842 - Gm9917 antisense antisense MGP_CASTEiJ_T0005393.1 MGP_CASTEiJ_G0004558.1 mouse_genomes_project 9 108425269 108427698 - Gm9917 antisense antisense MGP_CASTEiJ_T0017808.1 MGP_CASTEiJ_G0015066.1 mouse_genomes_project 9 89232767 89234376 - Snhg5 processed_transcript lincRNA MGP_CASTEiJ_T0017809.1 MGP_CASTEiJ_G0015066.1 mouse_genomes_project 9 89232769 89234337 - Snhg5 processed_transcript lincRNA MGP_CASTEiJ_T0017810.1 MGP_CASTEiJ_G0015066.1 mouse_genomes_project 9 89232774 89233412 - Snhg5 processed_transcript lincRNA MGP_CASTEiJ_T0093395.1 MGP_CASTEiJ_G0034033.1 mouse_genomes_project 9 73647016 74137403 - MGP_CASTEiJ_P0093395 Unc13c protein_coding protein_coding MGP_CASTEiJ_T0093396.1 MGP_CASTEiJ_G0034033.1 mouse_genomes_project 9 73647020 74137480 - MGP_CASTEiJ_P0093396 Unc13c protein_coding unknown_likely_coding MGP_CASTEiJ_T0093397.1 MGP_CASTEiJ_G0034033.1 mouse_genomes_project 9 73648459 74108457 - MGP_CASTEiJ_P0093397 Unc13c protein_coding protein_coding MGP_CASTEiJ_T0093204.1 MGP_CASTEiJ_G0033998.1 mouse_genomes_project 9 69985513 70004227 + MGP_CASTEiJ_P0093204 Bnip2 protein_coding protein_coding MGP_CASTEiJ_T0093205.1 MGP_CASTEiJ_G0033998.1 mouse_genomes_project 9 69985551 70004165 + MGP_CASTEiJ_P0093205 Bnip2 protein_coding protein_coding MGP_CASTEiJ_T0093206.1 MGP_CASTEiJ_G0033998.1 mouse_genomes_project 9 69985562 69999915 + MGP_CASTEiJ_P0093206 Bnip2 protein_coding protein_coding MGP_CASTEiJ_T0093207.1 MGP_CASTEiJ_G0033998.1 mouse_genomes_project 9 69985564 69995053 + MGP_CASTEiJ_P0093207 Bnip2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093208.1 MGP_CASTEiJ_G0033998.1 mouse_genomes_project 9 69991465 70003025 + MGP_CASTEiJ_P0093208 Bnip2 protein_coding protein_coding MGP_CASTEiJ_T0093209.1 MGP_CASTEiJ_G0033998.1 mouse_genomes_project 9 69993070 69998142 + Bnip2 protein_coding retained_intron MGP_CASTEiJ_T0093210.1 MGP_CASTEiJ_G0033998.1 mouse_genomes_project 9 69994126 69999545 + Bnip2 protein_coding processed_transcript MGP_CASTEiJ_T0093211.1 MGP_CASTEiJ_G0033998.1 mouse_genomes_project 9 69999286 70000675 + MGP_CASTEiJ_P0093211 Bnip2 protein_coding protein_coding MGP_CASTEiJ_T0092246.1 MGP_CASTEiJ_G0033723.1 mouse_genomes_project 9 43269409 43289037 + MGP_CASTEiJ_P0092246 Ift46 protein_coding protein_coding MGP_CASTEiJ_T0092247.1 MGP_CASTEiJ_G0033723.1 mouse_genomes_project 9 43269434 43278476 + MGP_CASTEiJ_P0092247 Ift46 protein_coding protein_coding MGP_CASTEiJ_T0092248.1 MGP_CASTEiJ_G0033723.1 mouse_genomes_project 9 43269525 43282666 + Ift46 protein_coding processed_transcript MGP_CASTEiJ_T0092249.1 MGP_CASTEiJ_G0033723.1 mouse_genomes_project 9 43269528 43270891 + Ift46 protein_coding processed_transcript MGP_CASTEiJ_T0092250.1 MGP_CASTEiJ_G0033723.1 mouse_genomes_project 9 43269574 43280390 + MGP_CASTEiJ_P0092250 Ift46 protein_coding protein_coding MGP_CASTEiJ_T0092251.1 MGP_CASTEiJ_G0033723.1 mouse_genomes_project 9 43269737 43278468 + MGP_CASTEiJ_P0092251 Ift46 protein_coding protein_coding MGP_CASTEiJ_T0092252.1 MGP_CASTEiJ_G0033723.1 mouse_genomes_project 9 43270173 43278537 + MGP_CASTEiJ_P0092252 Ift46 protein_coding protein_coding MGP_CASTEiJ_T0092253.1 MGP_CASTEiJ_G0033723.1 mouse_genomes_project 9 43272862 43287219 + MGP_CASTEiJ_P0092253 Ift46 protein_coding protein_coding MGP_CASTEiJ_T0092254.1 MGP_CASTEiJ_G0033723.1 mouse_genomes_project 9 43274244 43278546 + Ift46 protein_coding retained_intron MGP_CASTEiJ_T0092255.1 MGP_CASTEiJ_G0033723.1 mouse_genomes_project 9 43280643 43283900 + Ift46 protein_coding processed_transcript MGP_CASTEiJ_T0092256.1 MGP_CASTEiJ_G0033723.1 mouse_genomes_project 9 43285767 43287060 + Ift46 protein_coding retained_intron MGP_CASTEiJ_T0092391.1 MGP_CASTEiJ_G0033763.1 mouse_genomes_project 9 47063758 47101094 + MGP_CASTEiJ_P0092391 Nxpe4 protein_coding protein_coding MGP_CASTEiJ_T0092197.1 MGP_CASTEiJ_G0033707.1 mouse_genomes_project 9 42788931 42790315 + MGP_CASTEiJ_P0092197 H2afx protein_coding protein_coding MGP_CASTEiJ_T0005375.1 MGP_CASTEiJ_G0004547.1 mouse_genomes_project 9 106218493 106228235 + Gm19667 antisense antisense MGP_CASTEiJ_T0092216.1 MGP_CASTEiJ_G0033716.1 mouse_genomes_project 9 42914935 42916970 - MGP_CASTEiJ_P0092216 Upk2 protein_coding protein_coding MGP_CASTEiJ_T0093681.1 MGP_CASTEiJ_G0034097.1 mouse_genomes_project 9 87296693 87418312 - MGP_CASTEiJ_P0093681 Me1 protein_coding protein_coding MGP_CASTEiJ_T0093682.1 MGP_CASTEiJ_G0034097.1 mouse_genomes_project 9 87296728 87408617 - MGP_CASTEiJ_P0093682 Me1 protein_coding protein_coding MGP_CASTEiJ_T0093683.1 MGP_CASTEiJ_G0034097.1 mouse_genomes_project 9 87298104 87336144 - Me1 protein_coding processed_transcript MGP_CASTEiJ_T0093684.1 MGP_CASTEiJ_G0034097.1 mouse_genomes_project 9 87330980 87336177 - Me1 protein_coding processed_transcript MGP_CASTEiJ_T0092091.1 MGP_CASTEiJ_G0033674.1 mouse_genomes_project 9 38873562 38952269 + Clmp protein_coding processed_transcript MGP_CASTEiJ_T0092092.1 MGP_CASTEiJ_G0033674.1 mouse_genomes_project 9 38873614 38978691 + MGP_CASTEiJ_P0092092 Clmp protein_coding protein_coding MGP_CASTEiJ_T0092093.1 MGP_CASTEiJ_G0033674.1 mouse_genomes_project 9 38873637 38952392 + Clmp protein_coding retained_intron MGP_CASTEiJ_T0092094.1 MGP_CASTEiJ_G0033674.1 mouse_genomes_project 9 38966223 38975853 + Clmp protein_coding processed_transcript MGP_CASTEiJ_T0005305.1 MGP_CASTEiJ_G0004500.1 mouse_genomes_project 9 52634473 52650254 + Gm16124 antisense antisense MGP_CASTEiJ_T0092592.1 MGP_CASTEiJ_G0033834.1 mouse_genomes_project 9 53722364 53743484 - MGP_CASTEiJ_P0092592 Wdr61 protein_coding protein_coding MGP_CASTEiJ_T0092593.1 MGP_CASTEiJ_G0033834.1 mouse_genomes_project 9 53724784 53743512 - MGP_CASTEiJ_P0092593 Wdr61 protein_coding protein_coding MGP_CASTEiJ_T0092594.1 MGP_CASTEiJ_G0033834.1 mouse_genomes_project 9 53726848 53728443 - Wdr61 protein_coding retained_intron MGP_CASTEiJ_T0092595.1 MGP_CASTEiJ_G0033834.1 mouse_genomes_project 9 53730154 53731990 - Wdr61 protein_coding retained_intron MGP_CASTEiJ_T0091820.1 MGP_CASTEiJ_G0033535.1 mouse_genomes_project 9 33101567 33114646 + Srpr protein_coding processed_transcript MGP_CASTEiJ_T0091833.1 MGP_CASTEiJ_G0033535.1 mouse_genomes_project 9 33112259 33118321 + MGP_CASTEiJ_P0091833 Srpr protein_coding protein_coding MGP_CASTEiJ_T0091834.1 MGP_CASTEiJ_G0033535.1 mouse_genomes_project 9 33113002 33113961 + Srpr protein_coding retained_intron MGP_CASTEiJ_T0091835.1 MGP_CASTEiJ_G0033535.1 mouse_genomes_project 9 33116008 33162015 + MGP_CASTEiJ_P0091835 Srpr protein_coding protein_coding MGP_CASTEiJ_T0092441.1 MGP_CASTEiJ_G0033789.1 mouse_genomes_project 9 49452245 49459975 + MGP_CASTEiJ_P0092441 Pih1d2 protein_coding protein_coding MGP_CASTEiJ_T0092442.1 MGP_CASTEiJ_G0033789.1 mouse_genomes_project 9 49452257 49457464 + Pih1d2 protein_coding retained_intron MGP_CASTEiJ_T0092443.1 MGP_CASTEiJ_G0033789.1 mouse_genomes_project 9 49452261 49456713 + MGP_CASTEiJ_P0092443 Pih1d2 protein_coding protein_coding MGP_CASTEiJ_T0092444.1 MGP_CASTEiJ_G0033789.1 mouse_genomes_project 9 49452307 49459978 + MGP_CASTEiJ_P0092444 Pih1d2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092445.1 MGP_CASTEiJ_G0033789.1 mouse_genomes_project 9 49452445 49453742 + Pih1d2 protein_coding retained_intron MGP_CASTEiJ_T0092446.1 MGP_CASTEiJ_G0033789.1 mouse_genomes_project 9 49452474 49456132 + MGP_CASTEiJ_P0092446 Pih1d2 protein_coding protein_coding MGP_CASTEiJ_T0092447.1 MGP_CASTEiJ_G0033789.1 mouse_genomes_project 9 49452931 49456007 + MGP_CASTEiJ_P0092447 Pih1d2 protein_coding protein_coding MGP_CASTEiJ_T0094079.1 MGP_CASTEiJ_G0034183.1 mouse_genomes_project 9 103155781 103163911 + MGP_CASTEiJ_P0094079 Anapc13 protein_coding protein_coding MGP_CASTEiJ_T0094080.1 MGP_CASTEiJ_G0034183.1 mouse_genomes_project 9 103155809 103163736 + MGP_CASTEiJ_P0094080 Anapc13 protein_coding protein_coding MGP_CASTEiJ_T0094081.1 MGP_CASTEiJ_G0034183.1 mouse_genomes_project 9 103156148 103163728 + MGP_CASTEiJ_P0094081 Anapc13 protein_coding protein_coding MGP_CASTEiJ_T0094082.1 MGP_CASTEiJ_G0034183.1 mouse_genomes_project 9 103156164 103163728 + MGP_CASTEiJ_P0094082 Anapc13 protein_coding protein_coding MGP_CASTEiJ_T0094083.1 MGP_CASTEiJ_G0034183.1 mouse_genomes_project 9 103157997 103159213 + Anapc13 protein_coding retained_intron MGP_CASTEiJ_T0092781.1 MGP_CASTEiJ_G0033891.1 mouse_genomes_project 9 57488067 57524729 - MGP_CASTEiJ_P0092781 Pml protein_coding protein_coding MGP_CASTEiJ_T0092782.1 MGP_CASTEiJ_G0033891.1 mouse_genomes_project 9 57488067 57524729 - MGP_CASTEiJ_P0092782 Pml protein_coding protein_coding MGP_CASTEiJ_T0092783.1 MGP_CASTEiJ_G0033891.1 mouse_genomes_project 9 57488077 57524676 - MGP_CASTEiJ_P0092783 Pml protein_coding protein_coding MGP_CASTEiJ_T0092784.1 MGP_CASTEiJ_G0033891.1 mouse_genomes_project 9 57488078 57524608 - MGP_CASTEiJ_P0092784 Pml protein_coding protein_coding MGP_CASTEiJ_T0092785.1 MGP_CASTEiJ_G0033891.1 mouse_genomes_project 9 57488533 57505204 - Pml protein_coding retained_intron MGP_CASTEiJ_T0092786.1 MGP_CASTEiJ_G0033891.1 mouse_genomes_project 9 57489724 57524603 - MGP_CASTEiJ_P0092786 Pml protein_coding protein_coding MGP_CASTEiJ_T0092787.1 MGP_CASTEiJ_G0033891.1 mouse_genomes_project 9 57490236 57501941 - Pml protein_coding processed_transcript MGP_CASTEiJ_T0092788.1 MGP_CASTEiJ_G0033891.1 mouse_genomes_project 9 57490990 57524729 - MGP_CASTEiJ_P0092788 Pml protein_coding protein_coding MGP_CASTEiJ_T0092789.1 MGP_CASTEiJ_G0033891.1 mouse_genomes_project 9 57501661 57524729 - MGP_CASTEiJ_P0092789 Pml protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092790.1 MGP_CASTEiJ_G0033891.1 mouse_genomes_project 9 57502204 57505214 - Pml protein_coding retained_intron MGP_CASTEiJ_T0092791.1 MGP_CASTEiJ_G0033891.1 mouse_genomes_project 9 57522020 57524566 - MGP_CASTEiJ_P0092791 Pml protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0092792.1 MGP_CASTEiJ_G0033891.1 mouse_genomes_project 9 57522065 57524729 - MGP_CASTEiJ_P0092792 Pml protein_coding protein_coding MGP_CASTEiJ_T0094422.1 MGP_CASTEiJ_G0034245.1 mouse_genomes_project 9 108190888 108199987 + MGP_CASTEiJ_P0094422 6430571L13Rik protein_coding protein_coding MGP_CASTEiJ_T0094423.1 MGP_CASTEiJ_G0034245.1 mouse_genomes_project 9 108198431 108204089 + 6430571L13Rik protein_coding processed_transcript MGP_CASTEiJ_T0015471.1 MGP_CASTEiJ_G0013634.1 mouse_genomes_project 9 77325128 77325366 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0094282.1 MGP_CASTEiJ_G0034220.1 mouse_genomes_project 9 107019309 107037271 - MGP_CASTEiJ_P0094282 Alas1 protein_coding protein_coding MGP_CASTEiJ_T0094283.1 MGP_CASTEiJ_G0034220.1 mouse_genomes_project 9 107019312 107037667 - MGP_CASTEiJ_P0094283 Alas1 protein_coding protein_coding MGP_CASTEiJ_T0094284.1 MGP_CASTEiJ_G0034220.1 mouse_genomes_project 9 107019797 107037397 - MGP_CASTEiJ_P0094284 Alas1 protein_coding protein_coding MGP_CASTEiJ_T0094285.1 MGP_CASTEiJ_G0034220.1 mouse_genomes_project 9 107019812 107032296 - Alas1 protein_coding processed_transcript MGP_CASTEiJ_T0094286.1 MGP_CASTEiJ_G0034220.1 mouse_genomes_project 9 107020065 107026236 - MGP_CASTEiJ_P0094286 Alas1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094287.1 MGP_CASTEiJ_G0034220.1 mouse_genomes_project 9 107022891 107024572 - Alas1 protein_coding retained_intron MGP_CASTEiJ_T0094288.1 MGP_CASTEiJ_G0034220.1 mouse_genomes_project 9 107024165 107027539 - Alas1 protein_coding retained_intron MGP_CASTEiJ_T0094289.1 MGP_CASTEiJ_G0034220.1 mouse_genomes_project 9 107026321 107037393 - MGP_CASTEiJ_P0094289 Alas1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0094380.1 MGP_CASTEiJ_G0034239.1 mouse_genomes_project 9 107685282 107739890 - MGP_CASTEiJ_P0094380 Manf protein_coding protein_coding MGP_CASTEiJ_T0094382.1 MGP_CASTEiJ_G0034239.1 mouse_genomes_project 9 107716466 107738301 - MGP_CASTEiJ_P0094382 Manf protein_coding protein_coding MGP_CASTEiJ_T0094386.1 MGP_CASTEiJ_G0034239.1 mouse_genomes_project 9 107735430 107739997 - MGP_CASTEiJ_P0094386 Manf protein_coding protein_coding MGP_CASTEiJ_T0094387.1 MGP_CASTEiJ_G0034239.1 mouse_genomes_project 9 107736768 107739433 - MGP_CASTEiJ_P0094387 Manf protein_coding protein_coding MGP_CASTEiJ_T0094388.1 MGP_CASTEiJ_G0034239.1 mouse_genomes_project 9 107737099 107739888 - MGP_CASTEiJ_P0094388 Manf protein_coding protein_coding MGP_CASTEiJ_T0094389.1 MGP_CASTEiJ_G0034239.1 mouse_genomes_project 9 107738050 107739933 - Manf protein_coding retained_intron MGP_CASTEiJ_T0094390.1 MGP_CASTEiJ_G0034239.1 mouse_genomes_project 9 107738580 107739935 - Manf protein_coding retained_intron MGP_CASTEiJ_T0008984.1 MGP_CASTEiJ_G0007235.1 mouse_genomes_project 9 30676120 30677010 + lincRNA lincRNA MGP_CASTEiJ_T0093435.1 MGP_CASTEiJ_G0034042.1 mouse_genomes_project 9 75607948 75628446 - MGP_CASTEiJ_P0093435 protein_coding protein_coding MGP_CASTEiJ_T0093436.1 MGP_CASTEiJ_G0034042.1 mouse_genomes_project 9 75609436 75614903 - protein_coding retained_intron MGP_CASTEiJ_T0093437.1 MGP_CASTEiJ_G0034042.1 mouse_genomes_project 9 75610079 75629083 - protein_coding retained_intron MGP_CASTEiJ_T0093438.1 MGP_CASTEiJ_G0034042.1 mouse_genomes_project 9 75615554 75628670 - protein_coding processed_transcript MGP_CASTEiJ_T0093439.1 MGP_CASTEiJ_G0034042.1 mouse_genomes_project 9 75615707 75629072 - protein_coding processed_transcript MGP_CASTEiJ_T0093323.1 MGP_CASTEiJ_G0034019.1 mouse_genomes_project 9 72566074 72612673 - MGP_CASTEiJ_P0093323 Tex9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093324.1 MGP_CASTEiJ_G0034019.1 mouse_genomes_project 9 72576280 72612673 - MGP_CASTEiJ_P0093324 Tex9 protein_coding protein_coding MGP_CASTEiJ_T0093325.1 MGP_CASTEiJ_G0034019.1 mouse_genomes_project 9 72578003 72595273 - Tex9 protein_coding retained_intron MGP_CASTEiJ_T0093326.1 MGP_CASTEiJ_G0034019.1 mouse_genomes_project 9 72578734 72612929 - MGP_CASTEiJ_P0093326 Tex9 protein_coding protein_coding MGP_CASTEiJ_T0093327.1 MGP_CASTEiJ_G0034019.1 mouse_genomes_project 9 72578762 72612924 - MGP_CASTEiJ_P0093327 Tex9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093328.1 MGP_CASTEiJ_G0034019.1 mouse_genomes_project 9 72578838 72612818 - MGP_CASTEiJ_P0093328 Tex9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093329.1 MGP_CASTEiJ_G0034019.1 mouse_genomes_project 9 72578860 72612714 - MGP_CASTEiJ_P0093329 Tex9 protein_coding protein_coding MGP_CASTEiJ_T0093330.1 MGP_CASTEiJ_G0034019.1 mouse_genomes_project 9 72579581 72612678 - Tex9 protein_coding retained_intron MGP_CASTEiJ_T0093331.1 MGP_CASTEiJ_G0034019.1 mouse_genomes_project 9 72579600 72599927 - Tex9 protein_coding processed_transcript MGP_CASTEiJ_T0093332.1 MGP_CASTEiJ_G0034019.1 mouse_genomes_project 9 72579630 72607778 - MGP_CASTEiJ_P0093332 Tex9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0093333.1 MGP_CASTEiJ_G0034019.1 mouse_genomes_project 9 72597360 72598226 - Tex9 protein_coding retained_intron MGP_CASTEiJ_T0093334.1 MGP_CASTEiJ_G0034019.1 mouse_genomes_project 9 72597460 72606536 - MGP_CASTEiJ_P0093334 Tex9 protein_coding protein_coding MGP_CASTEiJ_T0093335.1 MGP_CASTEiJ_G0034019.1 mouse_genomes_project 9 72597461 72612656 - MGP_CASTEiJ_P0093335 Tex9 protein_coding protein_coding MGP_CASTEiJ_T0093336.1 MGP_CASTEiJ_G0034019.1 mouse_genomes_project 9 72599863 72612806 - Tex9 protein_coding retained_intron MGP_CASTEiJ_T0093337.1 MGP_CASTEiJ_G0034019.1 mouse_genomes_project 9 72600042 72612652 - Tex9 protein_coding retained_intron MGP_CASTEiJ_T0098498.1 MGP_CASTEiJ_G0035429.1 mouse_genomes_project 13 96651726 96651842 + Gm27792 rRNA rRNA MGP_CASTEiJ_T0036501.1 MGP_CASTEiJ_G0019764.1 mouse_genomes_project 13 41388264 41472612 - MGP_CASTEiJ_P0036501 protein_coding protein_coding MGP_CASTEiJ_T0006372.1 MGP_CASTEiJ_G0005301.1 mouse_genomes_project 13 29070403 29071540 + Gm11378 lincRNA lincRNA MGP_CASTEiJ_T0006379.1 MGP_CASTEiJ_G0005306.1 mouse_genomes_project 13 35080349 35081345 - Gm29458 lincRNA lincRNA MGP_CASTEiJ_T0100571.1 MGP_CASTEiJ_G0037484.1 mouse_genomes_project 13 48133376 48133509 + Gm23482 snoRNA snoRNA MGP_CASTEiJ_T0037210.1 MGP_CASTEiJ_G0020005.1 mouse_genomes_project 13 71405069 71410465 + MGP_CASTEiJ_P0037210 Irx2 protein_coding protein_coding MGP_CASTEiJ_T0037211.1 MGP_CASTEiJ_G0020005.1 mouse_genomes_project 13 71405161 71421903 + MGP_CASTEiJ_P0037211 Irx2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037212.1 MGP_CASTEiJ_G0020005.1 mouse_genomes_project 13 71405220 71406980 + Irx2 protein_coding processed_transcript MGP_CASTEiJ_T0037213.1 MGP_CASTEiJ_G0020005.1 mouse_genomes_project 13 71406079 71407135 + MGP_CASTEiJ_P0037213 Irx2 protein_coding protein_coding MGP_CASTEiJ_T0037214.1 MGP_CASTEiJ_G0020005.1 mouse_genomes_project 13 71408339 71409879 + Irx2 protein_coding retained_intron MGP_CASTEiJ_T0037215.1 MGP_CASTEiJ_G0020005.1 mouse_genomes_project 13 71408851 71410036 + MGP_CASTEiJ_P0037215 Irx2 protein_coding protein_coding MGP_CASTEiJ_T0037562.1 MGP_CASTEiJ_G0020110.1 mouse_genomes_project 13 96123954 96152518 + MGP_CASTEiJ_P0037562 Poc5 protein_coding protein_coding MGP_CASTEiJ_T0100566.1 MGP_CASTEiJ_G0037479.1 mouse_genomes_project 13 42906559 42906678 - Gm22213 snoRNA snoRNA MGP_CASTEiJ_T0036871.1 MGP_CASTEiJ_G0019869.1 mouse_genomes_project 13 54563869 54573774 + MGP_CASTEiJ_P0036871 Caml protein_coding protein_coding MGP_CASTEiJ_T0036872.1 MGP_CASTEiJ_G0019869.1 mouse_genomes_project 13 54564062 54566136 + Caml protein_coding retained_intron MGP_CASTEiJ_T0036873.1 MGP_CASTEiJ_G0019869.1 mouse_genomes_project 13 54569871 54573774 + Caml protein_coding retained_intron MGP_CASTEiJ_T0102043.1 MGP_CASTEiJ_G0038768.1 mouse_genomes_project 13 19864860 19865900 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0012580.1 MGP_CASTEiJ_G0010743.1 mouse_genomes_project 13 83502378 83503343 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037480.1 MGP_CASTEiJ_G0020078.1 mouse_genomes_project 13 91964103 91980125 + MGP_CASTEiJ_P0037480 Ankrd34b protein_coding protein_coding MGP_CASTEiJ_T0037481.1 MGP_CASTEiJ_G0020078.1 mouse_genomes_project 13 91964548 91976427 + MGP_CASTEiJ_P0037481 Ankrd34b protein_coding protein_coding MGP_CASTEiJ_T0037482.1 MGP_CASTEiJ_G0020078.1 mouse_genomes_project 13 91964865 91979398 + MGP_CASTEiJ_P0037482 Ankrd34b protein_coding protein_coding MGP_CASTEiJ_T0006373.1 MGP_CASTEiJ_G0005302.1 mouse_genomes_project 13 29873337 29877784 - Gm11381 lincRNA lincRNA MGP_CASTEiJ_T0099346.1 MGP_CASTEiJ_G0036259.1 mouse_genomes_project 13 39470431 39470597 - Gm24819 snRNA snRNA MGP_CASTEiJ_T0037148.1 MGP_CASTEiJ_G0019973.1 mouse_genomes_project 13 66058729 66087457 - MGP_CASTEiJ_P0037148 Zfp953 protein_coding protein_coding MGP_CASTEiJ_T0012520.1 MGP_CASTEiJ_G0010683.1 mouse_genomes_project 13 19048972 19050414 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036574.1 MGP_CASTEiJ_G0019787.1 mouse_genomes_project 13 46818296 46851368 - MGP_CASTEiJ_P0036574 Zfp169 protein_coding protein_coding MGP_CASTEiJ_T0036575.1 MGP_CASTEiJ_G0019787.1 mouse_genomes_project 13 46818306 46851326 - MGP_CASTEiJ_P0036575 Zfp169 protein_coding protein_coding MGP_CASTEiJ_T0036576.1 MGP_CASTEiJ_G0019787.1 mouse_genomes_project 13 46819855 46844853 - MGP_CASTEiJ_P0036576 Zfp169 protein_coding protein_coding MGP_CASTEiJ_T0036577.1 MGP_CASTEiJ_G0019787.1 mouse_genomes_project 13 46820108 46844853 - MGP_CASTEiJ_P0036577 Zfp169 protein_coding protein_coding MGP_CASTEiJ_T0036578.1 MGP_CASTEiJ_G0019787.1 mouse_genomes_project 13 46821906 46851342 - MGP_CASTEiJ_P0036578 Zfp169 protein_coding protein_coding MGP_CASTEiJ_T0036579.1 MGP_CASTEiJ_G0019787.1 mouse_genomes_project 13 46821984 46851358 - MGP_CASTEiJ_P0036579 Zfp169 protein_coding protein_coding MGP_CASTEiJ_T0036580.1 MGP_CASTEiJ_G0019787.1 mouse_genomes_project 13 46826379 46851383 - Zfp169 protein_coding retained_intron MGP_CASTEiJ_T0003321.1 MGP_CASTEiJ_G0003058.1 mouse_genomes_project 13 19107595 19108475 + Gm11290 antisense antisense MGP_CASTEiJ_T0003322.1 MGP_CASTEiJ_G0003058.1 mouse_genomes_project 13 19107595 19108497 + Gm11290 antisense antisense MGP_CASTEiJ_T0036900.1 MGP_CASTEiJ_G0019883.1 mouse_genomes_project 13 55526007 55531018 + MGP_CASTEiJ_P0036900 Fbxl21 protein_coding protein_coding MGP_CASTEiJ_T0036901.1 MGP_CASTEiJ_G0019883.1 mouse_genomes_project 13 55526026 55547411 + MGP_CASTEiJ_P0036901 Fbxl21 protein_coding protein_coding MGP_CASTEiJ_T0036902.1 MGP_CASTEiJ_G0019883.1 mouse_genomes_project 13 55526043 55544422 + MGP_CASTEiJ_P0036902 Fbxl21 protein_coding protein_coding MGP_CASTEiJ_T0036903.1 MGP_CASTEiJ_G0019883.1 mouse_genomes_project 13 55526048 55533701 + MGP_CASTEiJ_P0036903 Fbxl21 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0102042.1 MGP_CASTEiJ_G0038767.1 mouse_genomes_project 13 19792294 19793293 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011021.1 MGP_CASTEiJ_G0009209.1 mouse_genomes_project 13 43414580 43414923 - Gm23755 misc_RNA misc_RNA MGP_CASTEiJ_T0036074.1 MGP_CASTEiJ_G0019565.1 mouse_genomes_project 13 18619627 18623235 - MGP_CASTEiJ_P0036074 Olfr1535 protein_coding protein_coding MGP_CASTEiJ_T0036405.1 MGP_CASTEiJ_G0019730.1 mouse_genomes_project 13 35450209 35574926 + MGP_CASTEiJ_P0036405 Rreb1 protein_coding protein_coding MGP_CASTEiJ_T0036406.1 MGP_CASTEiJ_G0019730.1 mouse_genomes_project 13 35503010 35574903 + MGP_CASTEiJ_P0036406 Rreb1 protein_coding protein_coding MGP_CASTEiJ_T0036407.1 MGP_CASTEiJ_G0019730.1 mouse_genomes_project 13 35503074 35618047 + MGP_CASTEiJ_P0036407 Rreb1 protein_coding protein_coding MGP_CASTEiJ_T0036408.1 MGP_CASTEiJ_G0019730.1 mouse_genomes_project 13 35503350 35636891 + MGP_CASTEiJ_P0036408 Rreb1 protein_coding protein_coding MGP_CASTEiJ_T0036409.1 MGP_CASTEiJ_G0019730.1 mouse_genomes_project 13 35503418 35634061 + MGP_CASTEiJ_P0036409 Rreb1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036410.1 MGP_CASTEiJ_G0019730.1 mouse_genomes_project 13 35503967 35631905 + MGP_CASTEiJ_P0036410 Rreb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036411.1 MGP_CASTEiJ_G0019730.1 mouse_genomes_project 13 35503967 35615219 + MGP_CASTEiJ_P0036411 Rreb1 protein_coding protein_coding MGP_CASTEiJ_T0036412.1 MGP_CASTEiJ_G0019730.1 mouse_genomes_project 13 35504428 35615222 + MGP_CASTEiJ_P0036412 Rreb1 protein_coding protein_coding MGP_CASTEiJ_T0036413.1 MGP_CASTEiJ_G0019730.1 mouse_genomes_project 13 35537884 35574991 + MGP_CASTEiJ_P0036413 Rreb1 protein_coding protein_coding MGP_CASTEiJ_T0036414.1 MGP_CASTEiJ_G0019730.1 mouse_genomes_project 13 35569454 35636893 + MGP_CASTEiJ_P0036414 Rreb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036415.1 MGP_CASTEiJ_G0019730.1 mouse_genomes_project 13 35569908 35636885 + MGP_CASTEiJ_P0036415 Rreb1 protein_coding protein_coding MGP_CASTEiJ_T0036416.1 MGP_CASTEiJ_G0019730.1 mouse_genomes_project 13 35631896 35634089 + MGP_CASTEiJ_P0036416 Rreb1 protein_coding protein_coding MGP_CASTEiJ_T0009671.1 MGP_CASTEiJ_G0007859.1 mouse_genomes_project 13 38704431 38704503 + Mir5124a miRNA miRNA MGP_CASTEiJ_T0037039.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62540295 62675568 - MGP_CASTEiJ_P0037039 Fancc protein_coding protein_coding MGP_CASTEiJ_T0037040.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62547094 62675547 - MGP_CASTEiJ_P0037040 Fancc protein_coding protein_coding MGP_CASTEiJ_T0037041.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62547309 62552947 - Fancc protein_coding processed_transcript MGP_CASTEiJ_T0037042.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62547310 62675548 - MGP_CASTEiJ_P0037042 Fancc protein_coding protein_coding MGP_CASTEiJ_T0037043.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62547690 62675517 - MGP_CASTEiJ_P0037043 Fancc protein_coding protein_coding MGP_CASTEiJ_T0037044.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62548051 62560570 - Fancc protein_coding processed_transcript MGP_CASTEiJ_T0037045.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62552051 62675545 - Fancc protein_coding retained_intron MGP_CASTEiJ_T0037046.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62556844 62567629 - Fancc protein_coding processed_transcript MGP_CASTEiJ_T0037047.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62566298 62675568 - Fancc protein_coding retained_intron MGP_CASTEiJ_T0037048.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62566298 62588959 - Fancc protein_coding processed_transcript MGP_CASTEiJ_T0037049.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62576114 62637263 - MGP_CASTEiJ_P0037049 Fancc protein_coding protein_coding MGP_CASTEiJ_T0037050.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62584036 62675085 - MGP_CASTEiJ_P0037050 Fancc protein_coding protein_coding MGP_CASTEiJ_T0037051.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62584087 62645328 - MGP_CASTEiJ_P0037051 Fancc protein_coding protein_coding MGP_CASTEiJ_T0037052.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62584096 62637390 - Fancc protein_coding retained_intron MGP_CASTEiJ_T0037053.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62584126 62736195 - MGP_CASTEiJ_P0037053 Fancc protein_coding protein_coding MGP_CASTEiJ_T0037054.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62641987 62675506 - MGP_CASTEiJ_P0037054 Fancc protein_coding protein_coding MGP_CASTEiJ_T0037055.1 MGP_CASTEiJ_G0019933.1 mouse_genomes_project 13 62642044 62648734 - MGP_CASTEiJ_P0037055 Fancc protein_coding protein_coding MGP_CASTEiJ_T0012527.1 MGP_CASTEiJ_G0010690.1 mouse_genomes_project 13 21272803 21273400 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037232.1 MGP_CASTEiJ_G0020014.1 mouse_genomes_project 13 72511650 72533125 - MGP_CASTEiJ_P0037232 Slc6a19 protein_coding protein_coding MGP_CASTEiJ_T0037233.1 MGP_CASTEiJ_G0020014.1 mouse_genomes_project 13 72511652 72533040 - Slc6a19 protein_coding retained_intron MGP_CASTEiJ_T0037234.1 MGP_CASTEiJ_G0020014.1 mouse_genomes_project 13 72511652 72524533 - Slc6a19 protein_coding processed_transcript MGP_CASTEiJ_T0037235.1 MGP_CASTEiJ_G0020014.1 mouse_genomes_project 13 72520978 72537231 - Slc6a19 protein_coding processed_transcript MGP_CASTEiJ_T0037236.1 MGP_CASTEiJ_G0020014.1 mouse_genomes_project 13 72521462 72524276 - Slc6a19 protein_coding processed_transcript MGP_CASTEiJ_T0037237.1 MGP_CASTEiJ_G0020014.1 mouse_genomes_project 13 72521630 72533026 - MGP_CASTEiJ_P0037237 Slc6a19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037238.1 MGP_CASTEiJ_G0020014.1 mouse_genomes_project 13 72521668 72524153 - Slc6a19 protein_coding processed_transcript MGP_CASTEiJ_T0036090.1 MGP_CASTEiJ_G0019577.1 mouse_genomes_project 13 18828918 18829355 - MGP_CASTEiJ_P0036090 Hist1h2ak protein_coding protein_coding MGP_CASTEiJ_T0037453.1 MGP_CASTEiJ_G0020072.1 mouse_genomes_project 13 91332958 91342036 - MGP_CASTEiJ_P0037453 Zcchc9 protein_coding protein_coding MGP_CASTEiJ_T0037454.1 MGP_CASTEiJ_G0020072.1 mouse_genomes_project 13 91332959 91342036 - Zcchc9 protein_coding retained_intron MGP_CASTEiJ_T0037455.1 MGP_CASTEiJ_G0020072.1 mouse_genomes_project 13 91332959 91337381 - MGP_CASTEiJ_P0037455 Zcchc9 protein_coding protein_coding MGP_CASTEiJ_T0037456.1 MGP_CASTEiJ_G0020072.1 mouse_genomes_project 13 91335240 91341992 - Zcchc9 protein_coding retained_intron MGP_CASTEiJ_T0037457.1 MGP_CASTEiJ_G0020072.1 mouse_genomes_project 13 91336885 91337396 - Zcchc9 protein_coding retained_intron MGP_CASTEiJ_T0036936.1 MGP_CASTEiJ_G0019894.1 mouse_genomes_project 13 57371527 57445992 - MGP_CASTEiJ_P0036936 Kif27 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006419.1 MGP_CASTEiJ_G0005333.1 mouse_genomes_project 13 66313915 66327726 + 9430065F17Rik lincRNA lincRNA MGP_CASTEiJ_T0006420.1 MGP_CASTEiJ_G0005333.1 mouse_genomes_project 13 66313944 66330679 + 9430065F17Rik lincRNA lincRNA MGP_CASTEiJ_T0036181.1 MGP_CASTEiJ_G0019641.1 mouse_genomes_project 13 21001811 21003647 - MGP_CASTEiJ_P0036181 Hist1h2ba protein_coding protein_coding MGP_CASTEiJ_T0036152.1 MGP_CASTEiJ_G0019624.1 mouse_genomes_project 13 20678440 20679188 - MGP_CASTEiJ_P0036152 Hist1h1e protein_coding protein_coding MGP_CASTEiJ_T0037192.1 MGP_CASTEiJ_G0019998.1 mouse_genomes_project 13 68230147 68269697 - MGP_CASTEiJ_P0037192 Srd5a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037193.1 MGP_CASTEiJ_G0019998.1 mouse_genomes_project 13 68230151 68269892 - MGP_CASTEiJ_P0037193 Srd5a1 protein_coding protein_coding MGP_CASTEiJ_T0037194.1 MGP_CASTEiJ_G0019998.1 mouse_genomes_project 13 68251863 68269798 - Srd5a1 protein_coding processed_transcript MGP_CASTEiJ_T0011022.1 MGP_CASTEiJ_G0009210.1 mouse_genomes_project 13 49579140 49579266 + Gm22199 misc_RNA misc_RNA MGP_CASTEiJ_T0037175.1 MGP_CASTEiJ_G0019987.1 mouse_genomes_project 13 66597070 66609430 - MGP_CASTEiJ_P0037175 protein_coding protein_coding MGP_CASTEiJ_T0037083.1 MGP_CASTEiJ_G0019939.1 mouse_genomes_project 13 63437660 63462314 + MGP_CASTEiJ_P0037083 Habp4 protein_coding protein_coding MGP_CASTEiJ_T0036397.1 MGP_CASTEiJ_G0019726.1 mouse_genomes_project 13 33696950 34136634 + MGP_CASTEiJ_P0036397 Fars2 protein_coding protein_coding MGP_CASTEiJ_T0036398.1 MGP_CASTEiJ_G0019726.1 mouse_genomes_project 13 33696950 34136634 + MGP_CASTEiJ_P0036398 Fars2 protein_coding protein_coding MGP_CASTEiJ_T0036791.1 MGP_CASTEiJ_G0019845.1 mouse_genomes_project 13 53834274 53892965 + MGP_CASTEiJ_P0036791 Unc5a protein_coding protein_coding MGP_CASTEiJ_T0036792.1 MGP_CASTEiJ_G0019845.1 mouse_genomes_project 13 53834274 53892965 + MGP_CASTEiJ_P0036792 Unc5a protein_coding protein_coding MGP_CASTEiJ_T0036793.1 MGP_CASTEiJ_G0019845.1 mouse_genomes_project 13 53883487 53886734 + MGP_CASTEiJ_P0036793 Unc5a protein_coding protein_coding MGP_CASTEiJ_T0036794.1 MGP_CASTEiJ_G0019845.1 mouse_genomes_project 13 53889959 53891600 + Unc5a protein_coding retained_intron MGP_CASTEiJ_T0036795.1 MGP_CASTEiJ_G0019845.1 mouse_genomes_project 13 53890629 53892433 + MGP_CASTEiJ_P0036795 Unc5a protein_coding protein_coding MGP_CASTEiJ_T0037433.1 MGP_CASTEiJ_G0020066.1 mouse_genomes_project 13 90331176 90349705 - MGP_CASTEiJ_P0037433 Atp6ap1l protein_coding protein_coding MGP_CASTEiJ_T0037434.1 MGP_CASTEiJ_G0020066.1 mouse_genomes_project 13 90331182 90355187 - MGP_CASTEiJ_P0037434 Atp6ap1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037435.1 MGP_CASTEiJ_G0020066.1 mouse_genomes_project 13 90331182 90355235 - MGP_CASTEiJ_P0037435 Atp6ap1l protein_coding protein_coding MGP_CASTEiJ_T0037436.1 MGP_CASTEiJ_G0020066.1 mouse_genomes_project 13 90331293 90355317 - MGP_CASTEiJ_P0037436 Atp6ap1l protein_coding protein_coding MGP_CASTEiJ_T0037437.1 MGP_CASTEiJ_G0020066.1 mouse_genomes_project 13 90348669 90355215 - Atp6ap1l protein_coding processed_transcript MGP_CASTEiJ_T0006368.1 MGP_CASTEiJ_G0005299.1 mouse_genomes_project 13 28999465 29010359 + Gm11377 lincRNA lincRNA MGP_CASTEiJ_T0006388.1 MGP_CASTEiJ_G0005314.1 mouse_genomes_project 13 42488433 42506682 + 1700029N11Rik lincRNA lincRNA MGP_CASTEiJ_T0006389.1 MGP_CASTEiJ_G0005314.1 mouse_genomes_project 13 42488448 42506685 + 1700029N11Rik lincRNA lincRNA MGP_CASTEiJ_T0102056.1 MGP_CASTEiJ_G0038781.1 mouse_genomes_project 13 24524183 24528116 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0012523.1 MGP_CASTEiJ_G0010686.1 mouse_genomes_project 13 20096298 20096762 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037639.1 MGP_CASTEiJ_G0020134.1 mouse_genomes_project 13 99155391 99258504 + MGP_CASTEiJ_P0037639 Zfp366 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037640.1 MGP_CASTEiJ_G0020134.1 mouse_genomes_project 13 99193661 99258942 + MGP_CASTEiJ_P0037640 Zfp366 protein_coding protein_coding MGP_CASTEiJ_T0099359.1 MGP_CASTEiJ_G0036272.1 mouse_genomes_project 13 93537645 93537745 + Gm24737 snRNA snRNA MGP_CASTEiJ_T0036503.1 MGP_CASTEiJ_G0019766.1 mouse_genomes_project 13 41617774 41678007 + MGP_CASTEiJ_P0036503 Rnf182 protein_coding protein_coding MGP_CASTEiJ_T0036504.1 MGP_CASTEiJ_G0019766.1 mouse_genomes_project 13 41618044 41675114 + MGP_CASTEiJ_P0036504 Rnf182 protein_coding protein_coding MGP_CASTEiJ_T0036428.1 MGP_CASTEiJ_G0019735.1 mouse_genomes_project 13 35912413 35935058 + MGP_CASTEiJ_P0036428 Snrnp48 protein_coding protein_coding MGP_CASTEiJ_T0036429.1 MGP_CASTEiJ_G0019735.1 mouse_genomes_project 13 35912425 35934312 + MGP_CASTEiJ_P0036429 Snrnp48 protein_coding protein_coding MGP_CASTEiJ_T0000863.1 MGP_CASTEiJ_G0000802.1 mouse_genomes_project 13 102335050 102336960 - TEC TEC MGP_CASTEiJ_T0037592.1 MGP_CASTEiJ_G0020119.1 mouse_genomes_project 13 96919158 96928625 - MGP_CASTEiJ_P0037592 Nsa2 protein_coding protein_coding MGP_CASTEiJ_T0012526.1 MGP_CASTEiJ_G0010689.1 mouse_genomes_project 13 20991902 20992267 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098833.1 MGP_CASTEiJ_G0035760.1 mouse_genomes_project 13 62616514 62620133 - Gm16132 sense_intronic sense_intronic MGP_CASTEiJ_T0037958.1 MGP_CASTEiJ_G0020232.1 mouse_genomes_project 13 120709283 120713083 + MGP_CASTEiJ_P0037958 protein_coding protein_coding MGP_CASTEiJ_T0036093.1 MGP_CASTEiJ_G0019580.1 mouse_genomes_project 13 18904194 19135444 - MGP_CASTEiJ_P0036093 Hist1h4n protein_coding protein_coding MGP_CASTEiJ_T0036147.1 MGP_CASTEiJ_G0019621.1 mouse_genomes_project 13 20609197 20609941 + MGP_CASTEiJ_P0036147 Hist1h1d protein_coding protein_coding MGP_CASTEiJ_T0036894.1 MGP_CASTEiJ_G0019877.1 mouse_genomes_project 13 55149124 55154238 - MGP_CASTEiJ_P0036894 Tifab protein_coding protein_coding MGP_CASTEiJ_T0098337.1 MGP_CASTEiJ_G0035268.1 mouse_genomes_project 13 90696379 90696806 + pseudogene pseudogene MGP_CASTEiJ_T0099361.1 MGP_CASTEiJ_G0036274.1 mouse_genomes_project 13 95819928 95820028 - Gm23955 snRNA snRNA MGP_CASTEiJ_T0036072.1 MGP_CASTEiJ_G0019564.1 mouse_genomes_project 13 18599699 18600686 - MGP_CASTEiJ_P0036072 protein_coding protein_coding MGP_CASTEiJ_T0037208.1 MGP_CASTEiJ_G0020004.1 mouse_genomes_project 13 70718409 70724071 - MGP_CASTEiJ_P0037208 Irx1 protein_coding protein_coding MGP_CASTEiJ_T0037209.1 MGP_CASTEiJ_G0020004.1 mouse_genomes_project 13 70718715 70723701 - MGP_CASTEiJ_P0037209 Irx1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036752.1 MGP_CASTEiJ_G0019839.1 mouse_genomes_project 13 53545802 53554467 - MGP_CASTEiJ_P0036752 Rnf44 protein_coding protein_coding MGP_CASTEiJ_T0036753.1 MGP_CASTEiJ_G0019839.1 mouse_genomes_project 13 53545805 53554101 - MGP_CASTEiJ_P0036753 Rnf44 protein_coding protein_coding MGP_CASTEiJ_T0036754.1 MGP_CASTEiJ_G0019839.1 mouse_genomes_project 13 53545811 53560297 - MGP_CASTEiJ_P0036754 Rnf44 protein_coding protein_coding MGP_CASTEiJ_T0036755.1 MGP_CASTEiJ_G0019839.1 mouse_genomes_project 13 53545815 53554561 - MGP_CASTEiJ_P0036755 Rnf44 protein_coding protein_coding MGP_CASTEiJ_T0036756.1 MGP_CASTEiJ_G0019839.1 mouse_genomes_project 13 53549050 53550482 - Rnf44 protein_coding retained_intron MGP_CASTEiJ_T0036757.1 MGP_CASTEiJ_G0019839.1 mouse_genomes_project 13 53549455 53560236 - MGP_CASTEiJ_P0036757 Rnf44 protein_coding protein_coding MGP_CASTEiJ_T0036758.1 MGP_CASTEiJ_G0019839.1 mouse_genomes_project 13 53549531 53554041 - MGP_CASTEiJ_P0036758 Rnf44 protein_coding protein_coding MGP_CASTEiJ_T0036759.1 MGP_CASTEiJ_G0019839.1 mouse_genomes_project 13 53549894 53550817 - Rnf44 protein_coding retained_intron MGP_CASTEiJ_T0036760.1 MGP_CASTEiJ_G0019839.1 mouse_genomes_project 13 53550019 53554573 - MGP_CASTEiJ_P0036760 Rnf44 protein_coding protein_coding MGP_CASTEiJ_T0036761.1 MGP_CASTEiJ_G0019839.1 mouse_genomes_project 13 53550115 53554630 - MGP_CASTEiJ_P0036761 Rnf44 protein_coding protein_coding MGP_CASTEiJ_T0036762.1 MGP_CASTEiJ_G0019839.1 mouse_genomes_project 13 53550373 53560202 - MGP_CASTEiJ_P0036762 Rnf44 protein_coding protein_coding MGP_CASTEiJ_T0036763.1 MGP_CASTEiJ_G0019839.1 mouse_genomes_project 13 53550439 53553640 - Rnf44 protein_coding processed_transcript MGP_CASTEiJ_T0036764.1 MGP_CASTEiJ_G0019839.1 mouse_genomes_project 13 53550450 53560240 - Rnf44 protein_coding processed_transcript MGP_CASTEiJ_T0036765.1 MGP_CASTEiJ_G0019839.1 mouse_genomes_project 13 53550459 53554646 - MGP_CASTEiJ_P0036765 Rnf44 protein_coding protein_coding MGP_CASTEiJ_T0006469.1 MGP_CASTEiJ_G0005369.1 mouse_genomes_project 13 112679294 112684350 + Gm15322 lincRNA lincRNA MGP_CASTEiJ_T0036390.1 MGP_CASTEiJ_G0019723.1 mouse_genomes_project 13 33460649 33473456 - MGP_CASTEiJ_P0036390 Rpp40 protein_coding protein_coding MGP_CASTEiJ_T0036391.1 MGP_CASTEiJ_G0019723.1 mouse_genomes_project 13 33463826 33465974 - MGP_CASTEiJ_P0036391 Rpp40 protein_coding protein_coding MGP_CASTEiJ_T0036392.1 MGP_CASTEiJ_G0019723.1 mouse_genomes_project 13 33463834 33473425 - Rpp40 protein_coding retained_intron MGP_CASTEiJ_T0036393.1 MGP_CASTEiJ_G0019723.1 mouse_genomes_project 13 33463837 33473441 - MGP_CASTEiJ_P0036393 Rpp40 protein_coding protein_coding MGP_CASTEiJ_T0006461.1 MGP_CASTEiJ_G0005363.1 mouse_genomes_project 13 108138216 108143021 + 1700006H21Rik lincRNA lincRNA MGP_CASTEiJ_T0006462.1 MGP_CASTEiJ_G0005363.1 mouse_genomes_project 13 108138216 108143010 + 1700006H21Rik lincRNA lincRNA MGP_CASTEiJ_T0036534.1 MGP_CASTEiJ_G0019773.1 mouse_genomes_project 13 43687703 44138724 - MGP_CASTEiJ_P0036534 Atxn1 protein_coding protein_coding MGP_CASTEiJ_T0036535.1 MGP_CASTEiJ_G0019773.1 mouse_genomes_project 13 43687703 44138724 - MGP_CASTEiJ_P0036535 Atxn1 protein_coding protein_coding MGP_CASTEiJ_T0036536.1 MGP_CASTEiJ_G0019773.1 mouse_genomes_project 13 43687703 44138724 - MGP_CASTEiJ_P0036536 Atxn1 protein_coding protein_coding MGP_CASTEiJ_T0036537.1 MGP_CASTEiJ_G0019773.1 mouse_genomes_project 13 43694916 43773983 - MGP_CASTEiJ_P0036537 Atxn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002424.1 MGP_CASTEiJ_G0002339.1 mouse_genomes_project 13 16153595 16153655 + MGP_CASTEiJ_P0002424 Trgj1 TR_J_gene TR_J_gene MGP_CASTEiJ_T0099356.1 MGP_CASTEiJ_G0036269.1 mouse_genomes_project 13 63579685 63579773 - Gm25654 snRNA snRNA MGP_CASTEiJ_T0000861.1 MGP_CASTEiJ_G0000800.1 mouse_genomes_project 13 101948683 101950859 - TEC TEC MGP_CASTEiJ_T0003343.1 MGP_CASTEiJ_G0003077.1 mouse_genomes_project 13 54732793 54738584 - antisense antisense MGP_CASTEiJ_T0003344.1 MGP_CASTEiJ_G0003077.1 mouse_genomes_project 13 54733598 54738569 - antisense antisense MGP_CASTEiJ_T0003345.1 MGP_CASTEiJ_G0003077.1 mouse_genomes_project 13 54733605 54738595 - antisense antisense MGP_CASTEiJ_T0037030.1 MGP_CASTEiJ_G0019928.1 mouse_genomes_project 13 61992001 61994531 + MGP_CASTEiJ_P0037030 Gm5141 protein_coding protein_coding MGP_CASTEiJ_T0036274.1 MGP_CASTEiJ_G0019678.1 mouse_genomes_project 13 25428939 25440813 + MGP_CASTEiJ_P0036274 Prl5a1 protein_coding protein_coding MGP_CASTEiJ_T0012549.1 MGP_CASTEiJ_G0010712.1 mouse_genomes_project 13 30654671 30655479 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037588.1 MGP_CASTEiJ_G0020116.1 mouse_genomes_project 13 96681662 96709079 + MGP_CASTEiJ_P0037588 Gcnt4 protein_coding protein_coding MGP_CASTEiJ_T0009677.1 MGP_CASTEiJ_G0007865.1 mouse_genomes_project 13 49034407 49034510 - Mir683-2 miRNA miRNA MGP_CASTEiJ_T0100593.1 MGP_CASTEiJ_G0037506.1 mouse_genomes_project 13 107374744 107374810 - Gm24431 snoRNA snoRNA MGP_CASTEiJ_T0037402.1 MGP_CASTEiJ_G0020059.1 mouse_genomes_project 13 85256004 85257616 - MGP_CASTEiJ_P0037402 Cox7c protein_coding protein_coding MGP_CASTEiJ_T0037403.1 MGP_CASTEiJ_G0020059.1 mouse_genomes_project 13 85256004 85258061 - MGP_CASTEiJ_P0037403 Cox7c protein_coding protein_coding MGP_CASTEiJ_T0037404.1 MGP_CASTEiJ_G0020059.1 mouse_genomes_project 13 85256009 85257503 - MGP_CASTEiJ_P0037404 Cox7c protein_coding protein_coding MGP_CASTEiJ_T0037405.1 MGP_CASTEiJ_G0020059.1 mouse_genomes_project 13 85256083 85257930 - Cox7c protein_coding processed_transcript MGP_CASTEiJ_T0037218.1 MGP_CASTEiJ_G0020007.1 mouse_genomes_project 13 72128130 72136968 - MGP_CASTEiJ_P0037218 Ndufs6 protein_coding protein_coding MGP_CASTEiJ_T0037219.1 MGP_CASTEiJ_G0020007.1 mouse_genomes_project 13 72128135 72136878 - MGP_CASTEiJ_P0037219 Ndufs6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0003341.1 MGP_CASTEiJ_G0003075.1 mouse_genomes_project 13 53647620 53655666 - antisense antisense MGP_CASTEiJ_T0099333.1 MGP_CASTEiJ_G0036246.1 mouse_genomes_project 13 10023147 10023247 - Gm22476 snRNA snRNA MGP_CASTEiJ_T0102033.1 MGP_CASTEiJ_G0038758.1 mouse_genomes_project 13 19497981 19499085 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0037558.1 MGP_CASTEiJ_G0020108.1 mouse_genomes_project 13 95388270 95393932 + MGP_CASTEiJ_P0037558 F2rl2 protein_coding protein_coding MGP_CASTEiJ_T0003331.1 MGP_CASTEiJ_G0003066.1 mouse_genomes_project 13 29257721 29260763 + Gm11379 antisense antisense MGP_CASTEiJ_T0012541.1 MGP_CASTEiJ_G0010704.1 mouse_genomes_project 13 26496490 26496991 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037836.1 MGP_CASTEiJ_G0020186.1 mouse_genomes_project 13 110611213 110857759 - MGP_CASTEiJ_P0037836 Rab3c protein_coding protein_coding MGP_CASTEiJ_T0003390.1 MGP_CASTEiJ_G0003098.1 mouse_genomes_project 13 104997884 105010632 + 2610204G07Rik antisense antisense MGP_CASTEiJ_T0037216.1 MGP_CASTEiJ_G0020006.1 mouse_genomes_project 13 72065328 72077041 + MGP_CASTEiJ_P0037216 Irx4 protein_coding protein_coding MGP_CASTEiJ_T0037217.1 MGP_CASTEiJ_G0020006.1 mouse_genomes_project 13 72065346 72077041 + MGP_CASTEiJ_P0037217 Irx4 protein_coding protein_coding MGP_CASTEiJ_T0003349.1 MGP_CASTEiJ_G0003079.1 mouse_genomes_project 13 62568907 62575680 + Gm16133 antisense antisense MGP_CASTEiJ_T0003350.1 MGP_CASTEiJ_G0003079.1 mouse_genomes_project 13 62568983 62575677 + Gm16133 antisense antisense MGP_CASTEiJ_T0036828.1 MGP_CASTEiJ_G0019854.1 mouse_genomes_project 13 54239779 54244815 - MGP_CASTEiJ_P0036828 Mxd3 protein_coding protein_coding MGP_CASTEiJ_T0036829.1 MGP_CASTEiJ_G0019854.1 mouse_genomes_project 13 54240093 54244790 - Mxd3 protein_coding retained_intron MGP_CASTEiJ_T0036830.1 MGP_CASTEiJ_G0019854.1 mouse_genomes_project 13 54240323 54244409 - Mxd3 protein_coding processed_transcript MGP_CASTEiJ_T0036843.1 MGP_CASTEiJ_G0019862.1 mouse_genomes_project 13 54405202 54419845 - MGP_CASTEiJ_P0036843 Dbn1 protein_coding protein_coding MGP_CASTEiJ_T0036844.1 MGP_CASTEiJ_G0019862.1 mouse_genomes_project 13 54405202 54419845 - MGP_CASTEiJ_P0036844 Dbn1 protein_coding protein_coding MGP_CASTEiJ_T0036845.1 MGP_CASTEiJ_G0019862.1 mouse_genomes_project 13 54405717 54419795 - MGP_CASTEiJ_P0036845 Dbn1 protein_coding protein_coding MGP_CASTEiJ_T0036846.1 MGP_CASTEiJ_G0019862.1 mouse_genomes_project 13 54406898 54419800 - Dbn1 protein_coding retained_intron MGP_CASTEiJ_T0036847.1 MGP_CASTEiJ_G0019862.1 mouse_genomes_project 13 54413106 54413868 - Dbn1 protein_coding retained_intron MGP_CASTEiJ_T0036848.1 MGP_CASTEiJ_G0019862.1 mouse_genomes_project 13 54413128 54413981 - Dbn1 protein_coding retained_intron MGP_CASTEiJ_T0036849.1 MGP_CASTEiJ_G0019862.1 mouse_genomes_project 13 54413273 54419367 - MGP_CASTEiJ_P0036849 Dbn1 protein_coding protein_coding MGP_CASTEiJ_T0036850.1 MGP_CASTEiJ_G0019862.1 mouse_genomes_project 13 54413390 54418392 - Dbn1 protein_coding processed_transcript MGP_CASTEiJ_T0036851.1 MGP_CASTEiJ_G0019862.1 mouse_genomes_project 13 54414003 54415686 - Dbn1 protein_coding retained_intron MGP_CASTEiJ_T0016616.1 MGP_CASTEiJ_G0014569.1 mouse_genomes_project 13 38809791 38854742 - A730081D07Rik processed_transcript processed_transcript MGP_CASTEiJ_T0037923.1 MGP_CASTEiJ_G0020219.1 mouse_genomes_project 13 117324261 117335585 - MGP_CASTEiJ_P0037923 Isl1 protein_coding protein_coding MGP_CASTEiJ_T0037924.1 MGP_CASTEiJ_G0020219.1 mouse_genomes_project 13 117325238 117335318 - MGP_CASTEiJ_P0037924 Isl1 protein_coding protein_coding MGP_CASTEiJ_T0037925.1 MGP_CASTEiJ_G0020219.1 mouse_genomes_project 13 117325370 117329326 - Isl1 protein_coding retained_intron MGP_CASTEiJ_T0037926.1 MGP_CASTEiJ_G0020219.1 mouse_genomes_project 13 117329020 117332298 - Isl1 protein_coding processed_transcript MGP_CASTEiJ_T0037927.1 MGP_CASTEiJ_G0020219.1 mouse_genomes_project 13 117332805 117335581 - Isl1 protein_coding retained_intron MGP_CASTEiJ_T0012518.1 MGP_CASTEiJ_G0010681.1 mouse_genomes_project 13 18993058 18994687 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009693.1 MGP_CASTEiJ_G0007881.1 mouse_genomes_project 13 75287470 75287540 - Gm24025 miRNA miRNA MGP_CASTEiJ_T0036153.1 MGP_CASTEiJ_G0019625.1 mouse_genomes_project 13 20735911 20744338 + MGP_CASTEiJ_P0036153 Hist1h2bc protein_coding unknown_likely_coding MGP_CASTEiJ_T0016602.1 MGP_CASTEiJ_G0014562.1 mouse_genomes_project 13 20343108 20412607 + 4930586N03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0037137.1 MGP_CASTEiJ_G0019967.1 mouse_genomes_project 13 65908641 65918481 + MGP_CASTEiJ_P0037137 Zfp455 protein_coding protein_coding MGP_CASTEiJ_T0099353.1 MGP_CASTEiJ_G0036266.1 mouse_genomes_project 13 55334562 55334666 - Gm24716 snRNA snRNA MGP_CASTEiJ_T0036047.1 MGP_CASTEiJ_G0019553.1 mouse_genomes_project 13 18364924 18373160 + MGP_CASTEiJ_P0036047 Gpx6 protein_coding protein_coding MGP_CASTEiJ_T0036048.1 MGP_CASTEiJ_G0019553.1 mouse_genomes_project 13 18370795 18373164 + Gpx6 protein_coding processed_transcript MGP_CASTEiJ_T0006460.1 MGP_CASTEiJ_G0005362.1 mouse_genomes_project 13 101795692 101796308 - Gm29341 lincRNA lincRNA MGP_CASTEiJ_T0012590.1 MGP_CASTEiJ_G0010753.1 mouse_genomes_project 13 101178022 101179008 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037063.1 MGP_CASTEiJ_G0019935.1 mouse_genomes_project 13 63073999 63110476 + MGP_CASTEiJ_P0037063 Ercc6l2 protein_coding protein_coding MGP_CASTEiJ_T0037064.1 MGP_CASTEiJ_G0019935.1 mouse_genomes_project 13 63074061 63130866 + MGP_CASTEiJ_P0037064 Ercc6l2 protein_coding protein_coding MGP_CASTEiJ_T0037065.1 MGP_CASTEiJ_G0019935.1 mouse_genomes_project 13 63074093 63093289 + Ercc6l2 protein_coding processed_transcript MGP_CASTEiJ_T0037066.1 MGP_CASTEiJ_G0019935.1 mouse_genomes_project 13 63074093 63110441 + MGP_CASTEiJ_P0037066 Ercc6l2 protein_coding protein_coding MGP_CASTEiJ_T0037067.1 MGP_CASTEiJ_G0019935.1 mouse_genomes_project 13 63074093 63127888 + MGP_CASTEiJ_P0037067 Ercc6l2 protein_coding protein_coding MGP_CASTEiJ_T0037068.1 MGP_CASTEiJ_G0019935.1 mouse_genomes_project 13 63074117 63110479 + MGP_CASTEiJ_P0037068 Ercc6l2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037069.1 MGP_CASTEiJ_G0019935.1 mouse_genomes_project 13 63078388 63127534 + MGP_CASTEiJ_P0037069 Ercc6l2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037070.1 MGP_CASTEiJ_G0019935.1 mouse_genomes_project 13 63078390 63115009 + MGP_CASTEiJ_P0037070 Ercc6l2 protein_coding protein_coding MGP_CASTEiJ_T0037071.1 MGP_CASTEiJ_G0019935.1 mouse_genomes_project 13 63078390 63127909 + MGP_CASTEiJ_P0037071 Ercc6l2 protein_coding protein_coding MGP_CASTEiJ_T0037072.1 MGP_CASTEiJ_G0019935.1 mouse_genomes_project 13 63078658 63097972 + MGP_CASTEiJ_P0037072 Ercc6l2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037073.1 MGP_CASTEiJ_G0019935.1 mouse_genomes_project 13 63128762 63130773 + Ercc6l2 protein_coding processed_transcript MGP_CASTEiJ_T0037074.1 MGP_CASTEiJ_G0019935.1 mouse_genomes_project 13 63130730 63162107 + MGP_CASTEiJ_P0037074 Ercc6l2 protein_coding protein_coding MGP_CASTEiJ_T0037775.1 MGP_CASTEiJ_G0020174.1 mouse_genomes_project 13 105833479 105837554 + MGP_CASTEiJ_P0037775 Htr1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0037019.1 MGP_CASTEiJ_G0019918.1 mouse_genomes_project 13 60194237 60196509 - MGP_CASTEiJ_P0037019 Ctla2a protein_coding protein_coding MGP_CASTEiJ_T0036459.1 MGP_CASTEiJ_G0019748.1 mouse_genomes_project 13 38956438 38965058 - MGP_CASTEiJ_P0036459 Gcm2 protein_coding protein_coding MGP_CASTEiJ_T0037625.1 MGP_CASTEiJ_G0020129.1 mouse_genomes_project 13 98590908 98593362 - MGP_CASTEiJ_P0037625 Tmem174 protein_coding protein_coding MGP_CASTEiJ_T0037283.1 MGP_CASTEiJ_G0020033.1 mouse_genomes_project 13 73632232 73750103 - MGP_CASTEiJ_P0037283 Cast protein_coding unknown_likely_coding MGP_CASTEiJ_T0037284.1 MGP_CASTEiJ_G0020033.1 mouse_genomes_project 13 73633057 73749514 - MGP_CASTEiJ_P0037284 Cast protein_coding protein_coding MGP_CASTEiJ_T0037171.1 MGP_CASTEiJ_G0019986.1 mouse_genomes_project 13 66462017 66479653 - MGP_CASTEiJ_P0037171 protein_coding protein_coding MGP_CASTEiJ_T0036265.1 MGP_CASTEiJ_G0019671.1 mouse_genomes_project 13 24775085 24784248 - MGP_CASTEiJ_P0036265 Prl8a1 protein_coding protein_coding MGP_CASTEiJ_T0036266.1 MGP_CASTEiJ_G0019671.1 mouse_genomes_project 13 24775595 24784248 - MGP_CASTEiJ_P0036266 Prl8a1 protein_coding protein_coding MGP_CASTEiJ_T0036463.1 MGP_CASTEiJ_G0019750.1 mouse_genomes_project 13 39048967 39085755 - MGP_CASTEiJ_P0036463 Elovl2 protein_coding protein_coding MGP_CASTEiJ_T0036464.1 MGP_CASTEiJ_G0019750.1 mouse_genomes_project 13 39048971 39085512 - MGP_CASTEiJ_P0036464 Elovl2 protein_coding protein_coding MGP_CASTEiJ_T0036465.1 MGP_CASTEiJ_G0019750.1 mouse_genomes_project 13 39051595 39085763 - MGP_CASTEiJ_P0036465 Elovl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037296.1 MGP_CASTEiJ_G0020040.1 mouse_genomes_project 13 75025633 75027779 - MGP_CASTEiJ_P0037296 Gpr150 protein_coding protein_coding MGP_CASTEiJ_T0036552.1 MGP_CASTEiJ_G0019781.1 mouse_genomes_project 13 45237590 45239895 - MGP_CASTEiJ_P0036552 Nhlrc1 protein_coding protein_coding MGP_CASTEiJ_T0037299.1 MGP_CASTEiJ_G0020042.1 mouse_genomes_project 13 75063560 75155724 + MGP_CASTEiJ_P0037299 Ttc37 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037684.1 MGP_CASTEiJ_G0020148.1 mouse_genomes_project 13 100754563 100790629 - MGP_CASTEiJ_P0037684 Rad17 protein_coding protein_coding MGP_CASTEiJ_T0037685.1 MGP_CASTEiJ_G0020148.1 mouse_genomes_project 13 100754563 100790629 - MGP_CASTEiJ_P0037685 Rad17 protein_coding protein_coding MGP_CASTEiJ_T0036219.1 MGP_CASTEiJ_G0019648.1 mouse_genomes_project 13 21914467 21926758 + MGP_CASTEiJ_P0036219 BC005537 protein_coding protein_coding MGP_CASTEiJ_T0036220.1 MGP_CASTEiJ_G0019648.1 mouse_genomes_project 13 21914830 21925407 + MGP_CASTEiJ_P0036220 BC005537 protein_coding protein_coding MGP_CASTEiJ_T0036394.1 MGP_CASTEiJ_G0019724.1 mouse_genomes_project 13 33535474 33546390 + Ppp1r3g protein_coding processed_transcript MGP_CASTEiJ_T0036395.1 MGP_CASTEiJ_G0019724.1 mouse_genomes_project 13 33545929 33548463 + MGP_CASTEiJ_P0036395 Ppp1r3g protein_coding protein_coding MGP_CASTEiJ_T0036107.1 MGP_CASTEiJ_G0019585.1 mouse_genomes_project 13 19134715 19135445 - MGP_CASTEiJ_P0036107 Hist1h4i protein_coding protein_coding MGP_CASTEiJ_T0037425.1 MGP_CASTEiJ_G0020063.1 mouse_genomes_project 13 89189960 89508653 - MGP_CASTEiJ_P0037425 Xrcc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037426.1 MGP_CASTEiJ_G0020063.1 mouse_genomes_project 13 89268621 89508738 - MGP_CASTEiJ_P0037426 Xrcc4 protein_coding protein_coding MGP_CASTEiJ_T0037427.1 MGP_CASTEiJ_G0020063.1 mouse_genomes_project 13 89479469 89508666 - MGP_CASTEiJ_P0037427 Xrcc4 protein_coding protein_coding MGP_CASTEiJ_T0037428.1 MGP_CASTEiJ_G0020063.1 mouse_genomes_project 13 89479504 89508211 - MGP_CASTEiJ_P0037428 Xrcc4 protein_coding protein_coding MGP_CASTEiJ_T0037569.1 MGP_CASTEiJ_G0020112.1 mouse_genomes_project 13 96229361 96294968 - MGP_CASTEiJ_P0037569 Polk protein_coding protein_coding MGP_CASTEiJ_T0037570.1 MGP_CASTEiJ_G0020112.1 mouse_genomes_project 13 96231544 96270663 - MGP_CASTEiJ_P0037570 Polk protein_coding protein_coding MGP_CASTEiJ_T0036115.1 MGP_CASTEiJ_G0019593.1 mouse_genomes_project 13 19394087 19394993 + MGP_CASTEiJ_P0036115 Vmn1r196 protein_coding protein_coding MGP_CASTEiJ_T0036624.1 MGP_CASTEiJ_G0019804.1 mouse_genomes_project 13 48026932 48043374 + MGP_CASTEiJ_P0036624 Ogn protein_coding protein_coding MGP_CASTEiJ_T0036243.1 MGP_CASTEiJ_G0019658.1 mouse_genomes_project 13 24225119 24232587 + MGP_CASTEiJ_P0036243 Prl protein_coding protein_coding MGP_CASTEiJ_T0037459.1 MGP_CASTEiJ_G0020074.1 mouse_genomes_project 13 91419646 91654982 - MGP_CASTEiJ_P0037459 Rasgrf2 protein_coding protein_coding MGP_CASTEiJ_T0037460.1 MGP_CASTEiJ_G0020074.1 mouse_genomes_project 13 91423678 91654982 - MGP_CASTEiJ_P0037460 Rasgrf2 protein_coding protein_coding MGP_CASTEiJ_T0037461.1 MGP_CASTEiJ_G0020074.1 mouse_genomes_project 13 91501895 91526472 - MGP_CASTEiJ_P0037461 Rasgrf2 protein_coding protein_coding MGP_CASTEiJ_T0037462.1 MGP_CASTEiJ_G0020074.1 mouse_genomes_project 13 91554193 91556578 - MGP_CASTEiJ_P0037462 Rasgrf2 protein_coding protein_coding MGP_CASTEiJ_T0037463.1 MGP_CASTEiJ_G0020074.1 mouse_genomes_project 13 91554193 91655144 - MGP_CASTEiJ_P0037463 Rasgrf2 protein_coding protein_coding MGP_CASTEiJ_T0000849.1 MGP_CASTEiJ_G0000788.1 mouse_genomes_project 13 78320863 78321325 - TEC TEC MGP_CASTEiJ_T0035848.1 MGP_CASTEiJ_G0019492.1 mouse_genomes_project 13 1081128 1101087 + MGP_CASTEiJ_P0035848 Akr1c21 protein_coding protein_coding MGP_CASTEiJ_T0035849.1 MGP_CASTEiJ_G0019492.1 mouse_genomes_project 13 1088785 1092955 + Akr1c21 protein_coding retained_intron MGP_CASTEiJ_T0036179.1 MGP_CASTEiJ_G0019640.1 mouse_genomes_project 13 20965561 20982627 - MGP_CASTEiJ_P0036179 Slc17a4 protein_coding protein_coding MGP_CASTEiJ_T0036180.1 MGP_CASTEiJ_G0019640.1 mouse_genomes_project 13 20965712 20982629 - MGP_CASTEiJ_P0036180 Slc17a4 protein_coding protein_coding MGP_CASTEiJ_T0036028.1 MGP_CASTEiJ_G0019543.1 mouse_genomes_project 13 16712187 16717749 - MGP_CASTEiJ_P0036028 A530099J19Rik protein_coding protein_coding MGP_CASTEiJ_T0036297.1 MGP_CASTEiJ_G0019686.1 mouse_genomes_project 13 28163419 28181134 + MGP_CASTEiJ_P0036297 Irf4 protein_coding protein_coding MGP_CASTEiJ_T0036298.1 MGP_CASTEiJ_G0019686.1 mouse_genomes_project 13 28163419 28181134 + MGP_CASTEiJ_P0036298 Irf4 protein_coding protein_coding MGP_CASTEiJ_T0036299.1 MGP_CASTEiJ_G0019686.1 mouse_genomes_project 13 28164793 28195228 + MGP_CASTEiJ_P0036299 Irf4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036121.1 MGP_CASTEiJ_G0019599.1 mouse_genomes_project 13 19582472 19583375 + MGP_CASTEiJ_P0036121 Vmn1r201 protein_coding protein_coding MGP_CASTEiJ_T0036360.1 MGP_CASTEiJ_G0019713.1 mouse_genomes_project 13 31657990 31665900 + MGP_CASTEiJ_P0036360 Psmg4 protein_coding protein_coding MGP_CASTEiJ_T0036361.1 MGP_CASTEiJ_G0019713.1 mouse_genomes_project 13 31657990 31665904 + MGP_CASTEiJ_P0036361 Psmg4 protein_coding protein_coding MGP_CASTEiJ_T0099341.1 MGP_CASTEiJ_G0036254.1 mouse_genomes_project 13 27539047 27539231 - Gm23206 snRNA snRNA MGP_CASTEiJ_T0036573.1 MGP_CASTEiJ_G0019786.1 mouse_genomes_project 13 46572059 46574658 + MGP_CASTEiJ_P0036573 Id4 protein_coding protein_coding MGP_CASTEiJ_T0037606.1 MGP_CASTEiJ_G0020122.1 mouse_genomes_project 13 97049601 97056790 + MGP_CASTEiJ_P0037606 Enc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036141.1 MGP_CASTEiJ_G0019616.1 mouse_genomes_project 13 20502606 20511498 - MGP_CASTEiJ_P0036141 Btn1a1 protein_coding protein_coding MGP_CASTEiJ_T0036142.1 MGP_CASTEiJ_G0019616.1 mouse_genomes_project 13 20509370 20511524 - MGP_CASTEiJ_P0036142 Btn1a1 protein_coding protein_coding MGP_CASTEiJ_T0009658.1 MGP_CASTEiJ_G0007846.1 mouse_genomes_project 13 3596006 3596116 - Gm22689 miRNA miRNA MGP_CASTEiJ_T0099363.1 MGP_CASTEiJ_G0036276.1 mouse_genomes_project 13 103883779 103883866 + Gm24870 snRNA snRNA MGP_CASTEiJ_T0036621.1 MGP_CASTEiJ_G0019802.1 mouse_genomes_project 13 47957421 47981574 + MGP_CASTEiJ_P0036621 Aspn protein_coding protein_coding MGP_CASTEiJ_T0036622.1 MGP_CASTEiJ_G0019802.1 mouse_genomes_project 13 47957421 47981574 + MGP_CASTEiJ_P0036622 Aspn protein_coding protein_coding MGP_CASTEiJ_T0036605.1 MGP_CASTEiJ_G0019796.1 mouse_genomes_project 13 47624747 47642203 - MGP_CASTEiJ_P0036605 Susd3 protein_coding protein_coding MGP_CASTEiJ_T0036606.1 MGP_CASTEiJ_G0019796.1 mouse_genomes_project 13 47624886 47642615 - MGP_CASTEiJ_P0036606 Susd3 protein_coding protein_coding MGP_CASTEiJ_T0036607.1 MGP_CASTEiJ_G0019796.1 mouse_genomes_project 13 47625361 47642572 - MGP_CASTEiJ_P0036607 Susd3 protein_coding protein_coding MGP_CASTEiJ_T0036608.1 MGP_CASTEiJ_G0019796.1 mouse_genomes_project 13 47631632 47634573 - Susd3 protein_coding processed_transcript MGP_CASTEiJ_T0036609.1 MGP_CASTEiJ_G0019796.1 mouse_genomes_project 13 47631929 47642063 - MGP_CASTEiJ_P0036609 Susd3 protein_coding protein_coding MGP_CASTEiJ_T0036610.1 MGP_CASTEiJ_G0019796.1 mouse_genomes_project 13 47632862 47636832 - Susd3 protein_coding processed_transcript MGP_CASTEiJ_T0035873.1 MGP_CASTEiJ_G0019500.1 mouse_genomes_project 13 4702455 5290854 + MGP_CASTEiJ_P0035873 Adarb2 protein_coding protein_coding MGP_CASTEiJ_T0035874.1 MGP_CASTEiJ_G0019500.1 mouse_genomes_project 13 4702497 4833853 + MGP_CASTEiJ_P0035874 Adarb2 protein_coding protein_coding MGP_CASTEiJ_T0035875.1 MGP_CASTEiJ_G0019500.1 mouse_genomes_project 13 4702502 5292528 + MGP_CASTEiJ_P0035875 Adarb2 protein_coding protein_coding MGP_CASTEiJ_T0035876.1 MGP_CASTEiJ_G0019500.1 mouse_genomes_project 13 4702511 5288194 + MGP_CASTEiJ_P0035876 Adarb2 protein_coding protein_coding MGP_CASTEiJ_T0035877.1 MGP_CASTEiJ_G0019500.1 mouse_genomes_project 13 5076845 5288434 + MGP_CASTEiJ_P0035877 Adarb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037645.1 MGP_CASTEiJ_G0020138.1 mouse_genomes_project 13 99953009 99956914 - MGP_CASTEiJ_P0037645 Cartpt protein_coding protein_coding MGP_CASTEiJ_T0003320.1 MGP_CASTEiJ_G0003057.1 mouse_genomes_project 13 19032774 19037553 - Gm11280 antisense antisense MGP_CASTEiJ_T0003370.1 MGP_CASTEiJ_G0003088.1 mouse_genomes_project 13 83377587 83380179 - A230107N01Rik antisense antisense MGP_CASTEiJ_T0003371.1 MGP_CASTEiJ_G0003088.1 mouse_genomes_project 13 83378613 83380104 - A230107N01Rik antisense antisense MGP_CASTEiJ_T0012560.1 MGP_CASTEiJ_G0010723.1 mouse_genomes_project 13 61973563 61973876 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037966.1 MGP_CASTEiJ_G0020238.1 mouse_genomes_project 13 120980694 120981476 - MGP_CASTEiJ_P0037966 protein_coding protein_coding MGP_CASTEiJ_T0035878.1 MGP_CASTEiJ_G0019501.1 mouse_genomes_project 13 5329813 5393728 - MGP_CASTEiJ_P0035878 Wdr37 protein_coding protein_coding MGP_CASTEiJ_T0035879.1 MGP_CASTEiJ_G0019501.1 mouse_genomes_project 13 5329840 5393042 - MGP_CASTEiJ_P0035879 Wdr37 protein_coding protein_coding MGP_CASTEiJ_T0035880.1 MGP_CASTEiJ_G0019501.1 mouse_genomes_project 13 5332576 5368520 - MGP_CASTEiJ_P0035880 Wdr37 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035881.1 MGP_CASTEiJ_G0019501.1 mouse_genomes_project 13 5339247 5370436 - MGP_CASTEiJ_P0035881 Wdr37 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035882.1 MGP_CASTEiJ_G0019501.1 mouse_genomes_project 13 5339305 5374570 - MGP_CASTEiJ_P0035882 Wdr37 protein_coding protein_coding MGP_CASTEiJ_T0035883.1 MGP_CASTEiJ_G0019501.1 mouse_genomes_project 13 5356431 5358263 - Wdr37 protein_coding retained_intron MGP_CASTEiJ_T0035884.1 MGP_CASTEiJ_G0019501.1 mouse_genomes_project 13 5363697 5380285 - MGP_CASTEiJ_P0035884 Wdr37 protein_coding protein_coding MGP_CASTEiJ_T0035885.1 MGP_CASTEiJ_G0019501.1 mouse_genomes_project 13 5368562 5393734 - MGP_CASTEiJ_P0035885 Wdr37 protein_coding protein_coding MGP_CASTEiJ_T0035886.1 MGP_CASTEiJ_G0019501.1 mouse_genomes_project 13 5370420 5382793 - MGP_CASTEiJ_P0035886 Wdr37 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035887.1 MGP_CASTEiJ_G0019501.1 mouse_genomes_project 13 5371359 5393021 - MGP_CASTEiJ_P0035887 Wdr37 protein_coding protein_coding MGP_CASTEiJ_T0035888.1 MGP_CASTEiJ_G0019501.1 mouse_genomes_project 13 5373527 5392977 - MGP_CASTEiJ_P0035888 Wdr37 protein_coding protein_coding MGP_CASTEiJ_T0035889.1 MGP_CASTEiJ_G0019501.1 mouse_genomes_project 13 5373530 5382790 - MGP_CASTEiJ_P0035889 Wdr37 protein_coding protein_coding MGP_CASTEiJ_T0035890.1 MGP_CASTEiJ_G0019501.1 mouse_genomes_project 13 5374187 5392992 - Wdr37 protein_coding processed_transcript MGP_CASTEiJ_T0035891.1 MGP_CASTEiJ_G0019501.1 mouse_genomes_project 13 5374535 5380298 - Wdr37 protein_coding processed_transcript MGP_CASTEiJ_T0035892.1 MGP_CASTEiJ_G0019501.1 mouse_genomes_project 13 5377806 5393906 - MGP_CASTEiJ_P0035892 Wdr37 protein_coding protein_coding MGP_CASTEiJ_T0035893.1 MGP_CASTEiJ_G0019501.1 mouse_genomes_project 13 5382703 5393005 - MGP_CASTEiJ_P0035893 Wdr37 protein_coding protein_coding MGP_CASTEiJ_T0098336.1 MGP_CASTEiJ_G0035267.1 mouse_genomes_project 13 61973393 61974286 + pseudogene pseudogene MGP_CASTEiJ_T0100585.1 MGP_CASTEiJ_G0037498.1 mouse_genomes_project 13 81153013 81153144 + Gm24295 snoRNA snoRNA MGP_CASTEiJ_T0012547.1 MGP_CASTEiJ_G0010710.1 mouse_genomes_project 13 28624058 28624629 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000865.1 MGP_CASTEiJ_G0000804.1 mouse_genomes_project 13 115056767 115069134 + TEC TEC MGP_CASTEiJ_T0006442.1 MGP_CASTEiJ_G0005348.1 mouse_genomes_project 13 93524059 93526078 - Gm26527 lincRNA lincRNA MGP_CASTEiJ_T0035821.1 MGP_CASTEiJ_G0019477.1 mouse_genomes_project 13 49138 96898 - MGP_CASTEiJ_P0035821 Fam208b protein_coding protein_coding MGP_CASTEiJ_T0037297.1 MGP_CASTEiJ_G0020041.1 mouse_genomes_project 13 75031203 75063419 - MGP_CASTEiJ_P0037297 Arsk protein_coding protein_coding MGP_CASTEiJ_T0037298.1 MGP_CASTEiJ_G0020041.1 mouse_genomes_project 13 75042776 75063431 - Arsk protein_coding retained_intron MGP_CASTEiJ_T0036372.1 MGP_CASTEiJ_G0019717.1 mouse_genomes_project 13 32392692 32422689 + MGP_CASTEiJ_P0036372 Prpf4b protein_coding protein_coding MGP_CASTEiJ_T0036373.1 MGP_CASTEiJ_G0019717.1 mouse_genomes_project 13 32392823 32421468 + MGP_CASTEiJ_P0036373 Prpf4b protein_coding unknown_likely_coding MGP_CASTEiJ_T0102038.1 MGP_CASTEiJ_G0038763.1 mouse_genomes_project 13 19595792 19598294 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0006463.1 MGP_CASTEiJ_G0005364.1 mouse_genomes_project 13 112000356 112007292 - Gm6270 lincRNA lincRNA MGP_CASTEiJ_T0037227.1 MGP_CASTEiJ_G0020010.1 mouse_genomes_project 13 72358568 72400196 + MGP_CASTEiJ_P0037227 Slc6a3 protein_coding protein_coding MGP_CASTEiJ_T0037607.1 MGP_CASTEiJ_G0020123.1 mouse_genomes_project 13 97803079 97871201 - MGP_CASTEiJ_P0037607 Arhgef28 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037608.1 MGP_CASTEiJ_G0020123.1 mouse_genomes_project 13 97803448 98132403 - MGP_CASTEiJ_P0037608 Arhgef28 protein_coding protein_coding MGP_CASTEiJ_T0099339.1 MGP_CASTEiJ_G0036252.1 mouse_genomes_project 13 20711730 20711834 + Gm22452 snRNA snRNA MGP_CASTEiJ_T0036091.1 MGP_CASTEiJ_G0019578.1 mouse_genomes_project 13 18844303 18845046 - MGP_CASTEiJ_P0036091 Hist1h1b protein_coding protein_coding MGP_CASTEiJ_T0037090.1 MGP_CASTEiJ_G0019944.1 mouse_genomes_project 13 63780090 63801092 - MGP_CASTEiJ_P0037090 1190003K10Rik protein_coding protein_coding MGP_CASTEiJ_T0036315.1 MGP_CASTEiJ_G0019696.1 mouse_genomes_project 13 30325225 30345421 + MGP_CASTEiJ_P0036315 Wrnip1 protein_coding protein_coding MGP_CASTEiJ_T0099365.1 MGP_CASTEiJ_G0036278.1 mouse_genomes_project 13 112995133 112995286 + Gm22768 snRNA snRNA MGP_CASTEiJ_T0000864.1 MGP_CASTEiJ_G0000803.1 mouse_genomes_project 13 112924619 112927730 + TEC TEC MGP_CASTEiJ_T0037394.1 MGP_CASTEiJ_G0020058.1 mouse_genomes_project 13 84399702 84485298 - MGP_CASTEiJ_P0037394 protein_coding protein_coding MGP_CASTEiJ_T0037395.1 MGP_CASTEiJ_G0020058.1 mouse_genomes_project 13 84400737 84403276 - protein_coding retained_intron MGP_CASTEiJ_T0037396.1 MGP_CASTEiJ_G0020058.1 mouse_genomes_project 13 84410302 84412110 - protein_coding retained_intron MGP_CASTEiJ_T0037397.1 MGP_CASTEiJ_G0020058.1 mouse_genomes_project 13 84414790 84417145 - protein_coding retained_intron MGP_CASTEiJ_T0037398.1 MGP_CASTEiJ_G0020058.1 mouse_genomes_project 13 84415362 84416552 - protein_coding retained_intron MGP_CASTEiJ_T0037399.1 MGP_CASTEiJ_G0020058.1 mouse_genomes_project 13 84415846 84485208 - MGP_CASTEiJ_P0037399 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037400.1 MGP_CASTEiJ_G0020058.1 mouse_genomes_project 13 84425364 84436282 - protein_coding retained_intron MGP_CASTEiJ_T0037401.1 MGP_CASTEiJ_G0020058.1 mouse_genomes_project 13 84433234 84440012 - protein_coding retained_intron MGP_CASTEiJ_T0036094.1 MGP_CASTEiJ_G0019581.1 mouse_genomes_project 13 19037449 19052776 + MGP_CASTEiJ_P0036094 Zfp184 protein_coding protein_coding MGP_CASTEiJ_T0036095.1 MGP_CASTEiJ_G0019581.1 mouse_genomes_project 13 19037467 19053065 + MGP_CASTEiJ_P0036095 Zfp184 protein_coding protein_coding MGP_CASTEiJ_T0036096.1 MGP_CASTEiJ_G0019581.1 mouse_genomes_project 13 19037467 19052894 + MGP_CASTEiJ_P0036096 Zfp184 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036097.1 MGP_CASTEiJ_G0019581.1 mouse_genomes_project 13 19037492 19042700 + MGP_CASTEiJ_P0036097 Zfp184 protein_coding protein_coding MGP_CASTEiJ_T0036098.1 MGP_CASTEiJ_G0019581.1 mouse_genomes_project 13 19038148 19052630 + MGP_CASTEiJ_P0036098 Zfp184 protein_coding protein_coding MGP_CASTEiJ_T0036099.1 MGP_CASTEiJ_G0019581.1 mouse_genomes_project 13 19041764 19051002 + Zfp184 protein_coding retained_intron MGP_CASTEiJ_T0102066.1 MGP_CASTEiJ_G0038791.1 mouse_genomes_project 13 31218592 31221623 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0009691.1 MGP_CASTEiJ_G0007879.1 mouse_genomes_project 13 62536804 62536872 + Mir24-1 miRNA miRNA MGP_CASTEiJ_T0037572.1 MGP_CASTEiJ_G0020114.1 mouse_genomes_project 13 96295100 96394051 + MGP_CASTEiJ_P0037572 Col4a3bp protein_coding protein_coding MGP_CASTEiJ_T0037573.1 MGP_CASTEiJ_G0020114.1 mouse_genomes_project 13 96295217 96396207 + MGP_CASTEiJ_P0037573 Col4a3bp protein_coding protein_coding MGP_CASTEiJ_T0037574.1 MGP_CASTEiJ_G0020114.1 mouse_genomes_project 13 96295217 96396207 + MGP_CASTEiJ_P0037574 Col4a3bp protein_coding protein_coding MGP_CASTEiJ_T0037575.1 MGP_CASTEiJ_G0020114.1 mouse_genomes_project 13 96295621 96410510 + MGP_CASTEiJ_P0037575 Col4a3bp protein_coding unknown_likely_coding MGP_CASTEiJ_T0037107.1 MGP_CASTEiJ_G0019955.1 mouse_genomes_project 13 65522720 65529066 - MGP_CASTEiJ_P0037107 Uqcrb protein_coding protein_coding MGP_CASTEiJ_T0037108.1 MGP_CASTEiJ_G0019955.1 mouse_genomes_project 13 65523164 65526447 - Uqcrb protein_coding processed_transcript MGP_CASTEiJ_T0035948.1 MGP_CASTEiJ_G0019514.1 mouse_genomes_project 13 9202096 9295205 + MGP_CASTEiJ_P0035948 Ero1lb protein_coding protein_coding MGP_CASTEiJ_T0035950.1 MGP_CASTEiJ_G0019514.1 mouse_genomes_project 13 9267109 9292583 + MGP_CASTEiJ_P0035950 Ero1lb protein_coding unknown_likely_coding MGP_CASTEiJ_T0037809.1 MGP_CASTEiJ_G0020184.1 mouse_genomes_project 13 108796331 108871863 + MGP_CASTEiJ_P0037809 Depdc1b protein_coding protein_coding MGP_CASTEiJ_T0037810.1 MGP_CASTEiJ_G0020184.1 mouse_genomes_project 13 108796339 108871163 + MGP_CASTEiJ_P0037810 Depdc1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0037811.1 MGP_CASTEiJ_G0020184.1 mouse_genomes_project 13 108796367 108804531 + Depdc1b protein_coding retained_intron MGP_CASTEiJ_T0037812.1 MGP_CASTEiJ_G0020184.1 mouse_genomes_project 13 108796379 108884845 + MGP_CASTEiJ_P0037812 Depdc1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037813.1 MGP_CASTEiJ_G0020184.1 mouse_genomes_project 13 108796421 108870986 + MGP_CASTEiJ_P0037813 Depdc1b protein_coding protein_coding MGP_CASTEiJ_T0037814.1 MGP_CASTEiJ_G0020184.1 mouse_genomes_project 13 108806580 108851175 + Depdc1b protein_coding processed_transcript MGP_CASTEiJ_T0037815.1 MGP_CASTEiJ_G0020184.1 mouse_genomes_project 13 108837711 108856256 + Depdc1b protein_coding retained_intron MGP_CASTEiJ_T0035894.1 MGP_CASTEiJ_G0019502.1 mouse_genomes_project 13 5409152 5417476 + MGP_CASTEiJ_P0035894 Idi1 protein_coding protein_coding MGP_CASTEiJ_T0035895.1 MGP_CASTEiJ_G0019502.1 mouse_genomes_project 13 5409594 5414383 + MGP_CASTEiJ_P0035895 Idi1 protein_coding protein_coding MGP_CASTEiJ_T0035896.1 MGP_CASTEiJ_G0019502.1 mouse_genomes_project 13 5409644 5416383 + MGP_CASTEiJ_P0035896 Idi1 protein_coding protein_coding MGP_CASTEiJ_T0035897.1 MGP_CASTEiJ_G0019502.1 mouse_genomes_project 13 5409645 5414425 + MGP_CASTEiJ_P0035897 Idi1 protein_coding protein_coding MGP_CASTEiJ_T0035898.1 MGP_CASTEiJ_G0019502.1 mouse_genomes_project 13 5410720 5414160 + Idi1 protein_coding retained_intron MGP_CASTEiJ_T0100567.1 MGP_CASTEiJ_G0037480.1 mouse_genomes_project 13 44976552 44976682 - Gm24620 snoRNA snoRNA MGP_CASTEiJ_T0037014.1 MGP_CASTEiJ_G0019914.1 mouse_genomes_project 13 60063714 60068322 - MGP_CASTEiJ_P0037014 Ctsll3 protein_coding protein_coding MGP_CASTEiJ_T0037015.1 MGP_CASTEiJ_G0019915.1 mouse_genomes_project 13 60112388 60133412 - MGP_CASTEiJ_P0037015 4930486L24Rik protein_coding protein_coding MGP_CASTEiJ_T0037534.1 MGP_CASTEiJ_G0020100.1 mouse_genomes_project 13 94661249 94883647 - MGP_CASTEiJ_P0037534 Pde8b protein_coding unknown_likely_coding MGP_CASTEiJ_T0037535.1 MGP_CASTEiJ_G0020100.1 mouse_genomes_project 13 94670796 94913323 - MGP_CASTEiJ_P0037535 Pde8b protein_coding protein_coding MGP_CASTEiJ_T0037536.1 MGP_CASTEiJ_G0020100.1 mouse_genomes_project 13 94670801 94682143 - MGP_CASTEiJ_P0037536 Pde8b protein_coding protein_coding MGP_CASTEiJ_T0037537.1 MGP_CASTEiJ_G0020100.1 mouse_genomes_project 13 94670847 94883746 - MGP_CASTEiJ_P0037537 Pde8b protein_coding protein_coding MGP_CASTEiJ_T0037538.1 MGP_CASTEiJ_G0020100.1 mouse_genomes_project 13 94671669 94693744 - Pde8b protein_coding processed_transcript MGP_CASTEiJ_T0037539.1 MGP_CASTEiJ_G0020100.1 mouse_genomes_project 13 94672441 94913153 - MGP_CASTEiJ_P0037539 Pde8b protein_coding protein_coding MGP_CASTEiJ_T0037540.1 MGP_CASTEiJ_G0020100.1 mouse_genomes_project 13 94672458 94883494 - MGP_CASTEiJ_P0037540 Pde8b protein_coding protein_coding MGP_CASTEiJ_T0037541.1 MGP_CASTEiJ_G0020100.1 mouse_genomes_project 13 94672458 94883494 - MGP_CASTEiJ_P0037541 Pde8b protein_coding protein_coding MGP_CASTEiJ_T0037542.1 MGP_CASTEiJ_G0020100.1 mouse_genomes_project 13 94672458 94883494 - MGP_CASTEiJ_P0037542 Pde8b protein_coding protein_coding MGP_CASTEiJ_T0037543.1 MGP_CASTEiJ_G0020100.1 mouse_genomes_project 13 94681835 94884235 - MGP_CASTEiJ_P0037543 Pde8b protein_coding protein_coding MGP_CASTEiJ_T0037544.1 MGP_CASTEiJ_G0020100.1 mouse_genomes_project 13 94690875 94913261 - MGP_CASTEiJ_P0037544 Pde8b protein_coding protein_coding MGP_CASTEiJ_T0037545.1 MGP_CASTEiJ_G0020100.1 mouse_genomes_project 13 94691321 94701832 - Pde8b protein_coding retained_intron MGP_CASTEiJ_T0037546.1 MGP_CASTEiJ_G0020100.1 mouse_genomes_project 13 94741858 94883746 - Pde8b protein_coding retained_intron MGP_CASTEiJ_T0037547.1 MGP_CASTEiJ_G0020100.1 mouse_genomes_project 13 94752699 94913302 - MGP_CASTEiJ_P0037547 Pde8b protein_coding protein_coding MGP_CASTEiJ_T0037548.1 MGP_CASTEiJ_G0020100.1 mouse_genomes_project 13 94758175 94846914 - Pde8b protein_coding processed_transcript MGP_CASTEiJ_T0006435.1 MGP_CASTEiJ_G0005344.1 mouse_genomes_project 13 82841164 82847184 - Gm26803 lincRNA lincRNA MGP_CASTEiJ_T0002412.1 MGP_CASTEiJ_G0002329.1 mouse_genomes_project 13 16163139 16165887 + MGP_CASTEiJ_P0002412 Tcrg-C2 TR_C_gene TR_C_gene MGP_CASTEiJ_T0003392.1 MGP_CASTEiJ_G0003100.1 mouse_genomes_project 13 107219538 107221517 + Gm28988 antisense antisense MGP_CASTEiJ_T0037704.1 MGP_CASTEiJ_G0020155.1 mouse_genomes_project 13 100958636 100995543 - MGP_CASTEiJ_P0037704 Slc30a5 protein_coding protein_coding MGP_CASTEiJ_T0003358.1 MGP_CASTEiJ_G0003083.1 mouse_genomes_project 13 68196367 68197345 - A530095I07Rik antisense antisense MGP_CASTEiJ_T0006473.1 MGP_CASTEiJ_G0005372.1 mouse_genomes_project 13 119731752 119773730 + 1700003P14Rik lincRNA lincRNA MGP_CASTEiJ_T0006474.1 MGP_CASTEiJ_G0005372.1 mouse_genomes_project 13 119732544 119773652 + 1700003P14Rik lincRNA lincRNA MGP_CASTEiJ_T0006475.1 MGP_CASTEiJ_G0005372.1 mouse_genomes_project 13 119732560 119773655 + 1700003P14Rik lincRNA lincRNA MGP_CASTEiJ_T0003346.1 MGP_CASTEiJ_G0003078.1 mouse_genomes_project 13 57360309 57380522 + Gm26555 antisense antisense MGP_CASTEiJ_T0003347.1 MGP_CASTEiJ_G0003078.1 mouse_genomes_project 13 57360309 57383027 + Gm26555 antisense antisense MGP_CASTEiJ_T0003348.1 MGP_CASTEiJ_G0003078.1 mouse_genomes_project 13 57360317 57383028 + Gm26555 antisense antisense MGP_CASTEiJ_T0037300.1 MGP_CASTEiJ_G0020043.1 mouse_genomes_project 13 75360928 76016085 + MGP_CASTEiJ_P0037300 Mctp1 protein_coding protein_coding MGP_CASTEiJ_T0037301.1 MGP_CASTEiJ_G0020043.1 mouse_genomes_project 13 75565363 75749382 + MGP_CASTEiJ_P0037301 Mctp1 protein_coding protein_coding MGP_CASTEiJ_T0037302.1 MGP_CASTEiJ_G0020043.1 mouse_genomes_project 13 75565417 75715215 + MGP_CASTEiJ_P0037302 Mctp1 protein_coding protein_coding MGP_CASTEiJ_T0037303.1 MGP_CASTEiJ_G0020043.1 mouse_genomes_project 13 75565450 76017532 + MGP_CASTEiJ_P0037303 Mctp1 protein_coding protein_coding MGP_CASTEiJ_T0037304.1 MGP_CASTEiJ_G0020043.1 mouse_genomes_project 13 75706124 75809210 + Mctp1 protein_coding retained_intron MGP_CASTEiJ_T0037305.1 MGP_CASTEiJ_G0020043.1 mouse_genomes_project 13 75805575 75808448 + Mctp1 protein_coding retained_intron MGP_CASTEiJ_T0037306.1 MGP_CASTEiJ_G0020043.1 mouse_genomes_project 13 75805814 76015021 + Mctp1 protein_coding retained_intron MGP_CASTEiJ_T0037307.1 MGP_CASTEiJ_G0020043.1 mouse_genomes_project 13 75805851 75808654 + Mctp1 protein_coding retained_intron MGP_CASTEiJ_T0036375.1 MGP_CASTEiJ_G0019719.1 mouse_genomes_project 13 32444225 32478468 + MGP_CASTEiJ_P0036375 4933417A18Rik protein_coding protein_coding MGP_CASTEiJ_T0036376.1 MGP_CASTEiJ_G0019719.1 mouse_genomes_project 13 32444225 32481153 + MGP_CASTEiJ_P0036376 4933417A18Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037954.1 MGP_CASTEiJ_G0020230.1 mouse_genomes_project 13 120704379 120705238 - MGP_CASTEiJ_P0037954 protein_coding protein_coding MGP_CASTEiJ_T0037892.1 MGP_CASTEiJ_G0020208.1 mouse_genomes_project 13 113990520 113998934 + MGP_CASTEiJ_P0037892 Esm1 protein_coding protein_coding MGP_CASTEiJ_T0006467.1 MGP_CASTEiJ_G0005368.1 mouse_genomes_project 13 112550930 112554949 + Gm15326 lincRNA lincRNA MGP_CASTEiJ_T0006468.1 MGP_CASTEiJ_G0005368.1 mouse_genomes_project 13 112554150 112557745 + Gm15326 lincRNA lincRNA MGP_CASTEiJ_T0037472.1 MGP_CASTEiJ_G0020076.1 mouse_genomes_project 13 91839777 91840970 + MGP_CASTEiJ_P0037472 Gm20379 protein_coding protein_coding MGP_CASTEiJ_T0012571.1 MGP_CASTEiJ_G0010734.1 mouse_genomes_project 13 68684403 68684814 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100557.1 MGP_CASTEiJ_G0037470.1 mouse_genomes_project 13 9272652 9272840 + Gm25804 snoRNA snoRNA MGP_CASTEiJ_T0037132.1 MGP_CASTEiJ_G0019963.1 mouse_genomes_project 13 65774176 65793193 + MGP_CASTEiJ_P0037132 Zfp759 protein_coding protein_coding MGP_CASTEiJ_T0036471.1 MGP_CASTEiJ_G0019754.1 mouse_genomes_project 13 39499363 39534744 + MGP_CASTEiJ_P0036471 Tmem170b protein_coding protein_coding MGP_CASTEiJ_T0037140.1 MGP_CASTEiJ_G0019970.1 mouse_genomes_project 13 65998443 66023049 - MGP_CASTEiJ_P0037140 Zfp457 protein_coding protein_coding MGP_CASTEiJ_T0037141.1 MGP_CASTEiJ_G0019970.1 mouse_genomes_project 13 66022322 66023104 - Zfp457 protein_coding retained_intron MGP_CASTEiJ_T0036712.1 MGP_CASTEiJ_G0019830.1 mouse_genomes_project 13 53213384 53225313 + MGP_CASTEiJ_P0036712 Cplx2 protein_coding protein_coding MGP_CASTEiJ_T0036009.1 MGP_CASTEiJ_G0019538.1 mouse_genomes_project 13 15906816 16103352 + MGP_CASTEiJ_P0036009 Amph protein_coding protein_coding MGP_CASTEiJ_T0036010.1 MGP_CASTEiJ_G0019538.1 mouse_genomes_project 13 15906836 16103355 + MGP_CASTEiJ_P0036010 Amph protein_coding protein_coding MGP_CASTEiJ_T0036011.1 MGP_CASTEiJ_G0019538.1 mouse_genomes_project 13 15906863 16042640 + Amph protein_coding retained_intron MGP_CASTEiJ_T0036012.1 MGP_CASTEiJ_G0019538.1 mouse_genomes_project 13 16058737 16060644 + Amph protein_coding retained_intron MGP_CASTEiJ_T0036013.1 MGP_CASTEiJ_G0019538.1 mouse_genomes_project 13 16060408 16086394 + Amph protein_coding processed_transcript MGP_CASTEiJ_T0006376.1 MGP_CASTEiJ_G0005304.1 mouse_genomes_project 13 35047609 35050057 - Gm4035 lincRNA lincRNA MGP_CASTEiJ_T0006377.1 MGP_CASTEiJ_G0005304.1 mouse_genomes_project 13 35047721 35061685 - Gm4035 lincRNA lincRNA MGP_CASTEiJ_T0099338.1 MGP_CASTEiJ_G0036251.1 mouse_genomes_project 13 18546799 18546863 - Gm23779 snRNA snRNA MGP_CASTEiJ_T0100568.1 MGP_CASTEiJ_G0037481.1 mouse_genomes_project 13 45204917 45205046 + Gm24769 snoRNA snoRNA MGP_CASTEiJ_T0036123.1 MGP_CASTEiJ_G0019601.1 mouse_genomes_project 13 19691389 19698086 - MGP_CASTEiJ_P0036123 Vmn1r205 protein_coding protein_coding MGP_CASTEiJ_T0036709.1 MGP_CASTEiJ_G0019827.1 mouse_genomes_project 13 52865023 52870425 - MGP_CASTEiJ_P0036709 Drd1 protein_coding protein_coding MGP_CASTEiJ_T0036063.1 MGP_CASTEiJ_G0019558.1 mouse_genomes_project 13 18503233 18515778 - MGP_CASTEiJ_P0036063 Zscan26 protein_coding protein_coding MGP_CASTEiJ_T0036064.1 MGP_CASTEiJ_G0019558.1 mouse_genomes_project 13 18506708 18515781 - MGP_CASTEiJ_P0036064 Zscan26 protein_coding protein_coding MGP_CASTEiJ_T0037961.1 MGP_CASTEiJ_G0020235.1 mouse_genomes_project 13 120825600 120844625 + MGP_CASTEiJ_P0037961 Hmgcs1 protein_coding protein_coding MGP_CASTEiJ_T0102039.1 MGP_CASTEiJ_G0038764.1 mouse_genomes_project 13 19606616 19607202 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0036134.1 MGP_CASTEiJ_G0019612.1 mouse_genomes_project 13 20166072 20167069 + MGP_CASTEiJ_P0036134 Vmn1r219 protein_coding protein_coding MGP_CASTEiJ_T0006378.1 MGP_CASTEiJ_G0005305.1 mouse_genomes_project 13 35076293 35079296 - lincRNA lincRNA MGP_CASTEiJ_T0036477.1 MGP_CASTEiJ_G0019757.1 mouse_genomes_project 13 39968685 40099452 + MGP_CASTEiJ_P0036477 Hivep1 protein_coding protein_coding MGP_CASTEiJ_T0036478.1 MGP_CASTEiJ_G0019757.1 mouse_genomes_project 13 40069053 40097092 + MGP_CASTEiJ_P0036478 Hivep1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036305.1 MGP_CASTEiJ_G0019691.1 mouse_genomes_project 13 28993386 28996039 + MGP_CASTEiJ_P0036305 Foxq1 protein_coding protein_coding MGP_CASTEiJ_T0009701.1 MGP_CASTEiJ_G0007889.1 mouse_genomes_project 13 108283569 108283737 - Gm22118 miRNA miRNA MGP_CASTEiJ_T0036154.1 MGP_CASTEiJ_G0019626.1 mouse_genomes_project 13 20749900 20750626 + MGP_CASTEiJ_P0036154 Hist1h1t protein_coding protein_coding MGP_CASTEiJ_T0099366.1 MGP_CASTEiJ_G0036279.1 mouse_genomes_project 13 116005679 116005786 + Gm25985 snRNA snRNA MGP_CASTEiJ_T0009690.1 MGP_CASTEiJ_G0007878.1 mouse_genomes_project 13 62536795 62536880 - Mir3074-1 miRNA miRNA MGP_CASTEiJ_T0037288.1 MGP_CASTEiJ_G0020036.1 mouse_genomes_project 13 74821468 74831097 + MGP_CASTEiJ_P0037288 Glrx protein_coding protein_coding MGP_CASTEiJ_T0009703.1 MGP_CASTEiJ_G0007891.1 mouse_genomes_project 13 110450338 110450418 + Mir1904 miRNA miRNA MGP_CASTEiJ_T0006345.1 MGP_CASTEiJ_G0005283.1 mouse_genomes_project 13 20469873 20472921 - C230035I16Rik lincRNA lincRNA MGP_CASTEiJ_T0006346.1 MGP_CASTEiJ_G0005283.1 mouse_genomes_project 13 20470005 20472725 - C230035I16Rik lincRNA lincRNA MGP_CASTEiJ_T0102068.1 MGP_CASTEiJ_G0038793.1 mouse_genomes_project 13 31276669 31279918 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0037945.1 MGP_CASTEiJ_G0020228.1 mouse_genomes_project 13 120641101 120675772 + MGP_CASTEiJ_P0037945 Paip1 protein_coding protein_coding MGP_CASTEiJ_T0037946.1 MGP_CASTEiJ_G0020228.1 mouse_genomes_project 13 120641268 120674932 + MGP_CASTEiJ_P0037946 Paip1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037947.1 MGP_CASTEiJ_G0020228.1 mouse_genomes_project 13 120641295 120674873 + MGP_CASTEiJ_P0037947 Paip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037948.1 MGP_CASTEiJ_G0020228.1 mouse_genomes_project 13 120641309 120674759 + MGP_CASTEiJ_P0037948 Paip1 protein_coding protein_coding MGP_CASTEiJ_T0037949.1 MGP_CASTEiJ_G0020228.1 mouse_genomes_project 13 120641309 120677901 + MGP_CASTEiJ_P0037949 Paip1 protein_coding protein_coding MGP_CASTEiJ_T0037950.1 MGP_CASTEiJ_G0020228.1 mouse_genomes_project 13 120641334 120666432 + MGP_CASTEiJ_P0037950 Paip1 protein_coding protein_coding MGP_CASTEiJ_T0037951.1 MGP_CASTEiJ_G0020228.1 mouse_genomes_project 13 120654575 120674580 + MGP_CASTEiJ_P0037951 Paip1 protein_coding protein_coding MGP_CASTEiJ_T0037952.1 MGP_CASTEiJ_G0020228.1 mouse_genomes_project 13 120665916 120668544 + Paip1 protein_coding retained_intron MGP_CASTEiJ_T0036362.1 MGP_CASTEiJ_G0019714.1 mouse_genomes_project 13 31666897 31836704 - MGP_CASTEiJ_P0036362 Slc22a23 protein_coding protein_coding MGP_CASTEiJ_T0036363.1 MGP_CASTEiJ_G0019714.1 mouse_genomes_project 13 31670607 31681281 - Slc22a23 protein_coding retained_intron MGP_CASTEiJ_T0036364.1 MGP_CASTEiJ_G0019714.1 mouse_genomes_project 13 31691752 31836502 - MGP_CASTEiJ_P0036364 Slc22a23 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036365.1 MGP_CASTEiJ_G0019714.1 mouse_genomes_project 13 31709150 31836110 - Slc22a23 protein_coding processed_transcript MGP_CASTEiJ_T0036270.1 MGP_CASTEiJ_G0019674.1 mouse_genomes_project 13 24873289 24882589 - MGP_CASTEiJ_P0036270 Prl7a2 protein_coding protein_coding MGP_CASTEiJ_T0012542.1 MGP_CASTEiJ_G0010705.1 mouse_genomes_project 13 27509050 27509173 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036981.1 MGP_CASTEiJ_G0019902.1 mouse_genomes_project 13 58756079 58761907 - MGP_CASTEiJ_P0036981 Spata31d1d protein_coding protein_coding MGP_CASTEiJ_T0037959.1 MGP_CASTEiJ_G0020233.1 mouse_genomes_project 13 120746600 120747426 - MGP_CASTEiJ_P0037959 Gm21887 protein_coding protein_coding MGP_CASTEiJ_T0036000.1 MGP_CASTEiJ_G0019534.1 mouse_genomes_project 13 14775651 14832071 - MGP_CASTEiJ_P0036000 Rala protein_coding protein_coding MGP_CASTEiJ_T0037786.1 MGP_CASTEiJ_G0020177.1 mouse_genomes_project 13 107338119 107414050 - MGP_CASTEiJ_P0037786 Kif2a protein_coding protein_coding MGP_CASTEiJ_T0037787.1 MGP_CASTEiJ_G0020177.1 mouse_genomes_project 13 107340352 107381697 - MGP_CASTEiJ_P0037787 Kif2a protein_coding protein_coding MGP_CASTEiJ_T0037788.1 MGP_CASTEiJ_G0020177.1 mouse_genomes_project 13 107340965 107414058 - MGP_CASTEiJ_P0037788 Kif2a protein_coding protein_coding MGP_CASTEiJ_T0037789.1 MGP_CASTEiJ_G0020177.1 mouse_genomes_project 13 107341234 107381345 - MGP_CASTEiJ_P0037789 Kif2a protein_coding protein_coding MGP_CASTEiJ_T0037790.1 MGP_CASTEiJ_G0020177.1 mouse_genomes_project 13 107342874 107413959 - MGP_CASTEiJ_P0037790 Kif2a protein_coding protein_coding MGP_CASTEiJ_T0037791.1 MGP_CASTEiJ_G0020177.1 mouse_genomes_project 13 107349392 107359161 - MGP_CASTEiJ_P0037791 Kif2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037792.1 MGP_CASTEiJ_G0020177.1 mouse_genomes_project 13 107361757 107413681 - MGP_CASTEiJ_P0037792 Kif2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037793.1 MGP_CASTEiJ_G0020177.1 mouse_genomes_project 13 107369348 107378471 - MGP_CASTEiJ_P0037793 Kif2a protein_coding protein_coding MGP_CASTEiJ_T0037624.1 MGP_CASTEiJ_G0020128.1 mouse_genomes_project 13 98289791 98292259 + MGP_CASTEiJ_P0037624 Foxd1 protein_coding protein_coding MGP_CASTEiJ_T0012574.1 MGP_CASTEiJ_G0010737.1 mouse_genomes_project 13 75673073 75673494 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102030.1 MGP_CASTEiJ_G0038755.1 mouse_genomes_project 13 19151215 19151726 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0037879.1 MGP_CASTEiJ_G0020201.1 mouse_genomes_project 13 113674747 113726449 + MGP_CASTEiJ_P0037879 Dhx29 protein_coding protein_coding MGP_CASTEiJ_T0036354.1 MGP_CASTEiJ_G0019710.1 mouse_genomes_project 13 31487990 31519922 + MGP_CASTEiJ_P0036354 Ripk1 protein_coding protein_coding MGP_CASTEiJ_T0036355.1 MGP_CASTEiJ_G0019710.1 mouse_genomes_project 13 31488027 31500333 + Ripk1 protein_coding retained_intron MGP_CASTEiJ_T0036356.1 MGP_CASTEiJ_G0019710.1 mouse_genomes_project 13 31488501 31521415 + MGP_CASTEiJ_P0036356 Ripk1 protein_coding protein_coding MGP_CASTEiJ_T0036357.1 MGP_CASTEiJ_G0019710.1 mouse_genomes_project 13 31495318 31519051 + MGP_CASTEiJ_P0036357 Ripk1 protein_coding protein_coding MGP_CASTEiJ_T0037960.1 MGP_CASTEiJ_G0020234.1 mouse_genomes_project 13 120761818 120797573 + MGP_CASTEiJ_P0037960 Ccl28 protein_coding protein_coding MGP_CASTEiJ_T0100587.1 MGP_CASTEiJ_G0037500.1 mouse_genomes_project 13 89518123 89518257 + Gm24507 snoRNA snoRNA MGP_CASTEiJ_T0102052.1 MGP_CASTEiJ_G0038777.1 mouse_genomes_project 13 20097140 20097618 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0037308.1 MGP_CASTEiJ_G0020044.1 mouse_genomes_project 13 76028453 76125854 - MGP_CASTEiJ_P0037308 Slf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037309.1 MGP_CASTEiJ_G0020044.1 mouse_genomes_project 13 76028463 76126253 - MGP_CASTEiJ_P0037309 Slf1 protein_coding protein_coding MGP_CASTEiJ_T0037310.1 MGP_CASTEiJ_G0020044.1 mouse_genomes_project 13 76029346 76032773 - Slf1 protein_coding retained_intron MGP_CASTEiJ_T0037311.1 MGP_CASTEiJ_G0020044.1 mouse_genomes_project 13 76087243 76126245 - MGP_CASTEiJ_P0037311 Slf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037312.1 MGP_CASTEiJ_G0020044.1 mouse_genomes_project 13 76090597 76126245 - MGP_CASTEiJ_P0037312 Slf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037313.1 MGP_CASTEiJ_G0020044.1 mouse_genomes_project 13 76091554 76122059 - MGP_CASTEiJ_P0037313 Slf1 protein_coding protein_coding MGP_CASTEiJ_T0037314.1 MGP_CASTEiJ_G0020044.1 mouse_genomes_project 13 76091640 76126218 - MGP_CASTEiJ_P0037314 Slf1 protein_coding protein_coding MGP_CASTEiJ_T0037315.1 MGP_CASTEiJ_G0020044.1 mouse_genomes_project 13 76092766 76126240 - Slf1 protein_coding retained_intron MGP_CASTEiJ_T0037571.1 MGP_CASTEiJ_G0020113.1 mouse_genomes_project 13 96239802 96240191 + MGP_CASTEiJ_P0037571 Gm17622 protein_coding protein_coding MGP_CASTEiJ_T0036626.1 MGP_CASTEiJ_G0019806.1 mouse_genomes_project 13 48105955 48154782 + MGP_CASTEiJ_P0036626 Iars protein_coding protein_coding MGP_CASTEiJ_T0036627.1 MGP_CASTEiJ_G0019806.1 mouse_genomes_project 13 48105985 48154782 + MGP_CASTEiJ_P0036627 Iars protein_coding protein_coding MGP_CASTEiJ_T0036628.1 MGP_CASTEiJ_G0019806.1 mouse_genomes_project 13 48106046 48112184 + MGP_CASTEiJ_P0036628 Iars protein_coding protein_coding MGP_CASTEiJ_T0036629.1 MGP_CASTEiJ_G0019806.1 mouse_genomes_project 13 48111263 48154264 + MGP_CASTEiJ_P0036629 Iars protein_coding protein_coding MGP_CASTEiJ_T0036630.1 MGP_CASTEiJ_G0019806.1 mouse_genomes_project 13 48123263 48131097 + MGP_CASTEiJ_P0036630 Iars protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036631.1 MGP_CASTEiJ_G0019806.1 mouse_genomes_project 13 48123982 48135049 + Iars protein_coding retained_intron MGP_CASTEiJ_T0036632.1 MGP_CASTEiJ_G0019806.1 mouse_genomes_project 13 48125602 48134423 + Iars protein_coding retained_intron MGP_CASTEiJ_T0036633.1 MGP_CASTEiJ_G0019806.1 mouse_genomes_project 13 48138265 48143488 + Iars protein_coding retained_intron MGP_CASTEiJ_T0036634.1 MGP_CASTEiJ_G0019806.1 mouse_genomes_project 13 48142499 48143477 + Iars protein_coding retained_intron MGP_CASTEiJ_T0012528.1 MGP_CASTEiJ_G0010691.1 mouse_genomes_project 13 21378232 21378644 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009688.1 MGP_CASTEiJ_G0007876.1 mouse_genomes_project 13 62536080 62536154 + Mir23b miRNA miRNA MGP_CASTEiJ_T0100551.1 MGP_CASTEiJ_G0037464.1 mouse_genomes_project 13 1689163 1689295 - Gm24790 snoRNA snoRNA MGP_CASTEiJ_T0037022.1 MGP_CASTEiJ_G0019921.1 mouse_genomes_project 13 60298896 60304493 - MGP_CASTEiJ_P0037022 Ctsq protein_coding protein_coding MGP_CASTEiJ_T0037023.1 MGP_CASTEiJ_G0019921.1 mouse_genomes_project 13 60298906 60302051 - Ctsq protein_coding retained_intron MGP_CASTEiJ_T0037001.1 MGP_CASTEiJ_G0019906.1 mouse_genomes_project 13 58902332 58909309 - MGP_CASTEiJ_P0037001 Spata31d1a protein_coding protein_coding MGP_CASTEiJ_T0009686.1 MGP_CASTEiJ_G0007874.1 mouse_genomes_project 13 57482558 57482666 - Mir7-1 miRNA miRNA MGP_CASTEiJ_T0036560.1 MGP_CASTEiJ_G0019783.1 mouse_genomes_project 13 45269322 45279705 + MGP_CASTEiJ_P0036560 Kdm1b protein_coding protein_coding MGP_CASTEiJ_T0036561.1 MGP_CASTEiJ_G0019783.1 mouse_genomes_project 13 45269333 45310765 + MGP_CASTEiJ_P0036561 Kdm1b protein_coding protein_coding MGP_CASTEiJ_T0036562.1 MGP_CASTEiJ_G0019783.1 mouse_genomes_project 13 45270353 45303791 + MGP_CASTEiJ_P0036562 Kdm1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0036563.1 MGP_CASTEiJ_G0019783.1 mouse_genomes_project 13 45290431 45298441 + Kdm1b protein_coding retained_intron MGP_CASTEiJ_T0036564.1 MGP_CASTEiJ_G0019783.1 mouse_genomes_project 13 45292651 45310770 + Kdm1b protein_coding processed_transcript MGP_CASTEiJ_T0037029.1 MGP_CASTEiJ_G0019927.1 mouse_genomes_project 13 60868897 60874321 - MGP_CASTEiJ_P0037029 Cts3 protein_coding protein_coding MGP_CASTEiJ_T0037967.1 MGP_CASTEiJ_G0020239.1 mouse_genomes_project 13 120980702 120981430 - MGP_CASTEiJ_P0037967 protein_coding protein_coding MGP_CASTEiJ_T0037289.1 MGP_CASTEiJ_G0020037.1 mouse_genomes_project 13 74847969 74916377 - MGP_CASTEiJ_P0037289 Rhobtb3 protein_coding protein_coding MGP_CASTEiJ_T0037290.1 MGP_CASTEiJ_G0020037.1 mouse_genomes_project 13 74850445 74864125 - Rhobtb3 protein_coding processed_transcript MGP_CASTEiJ_T0037291.1 MGP_CASTEiJ_G0020037.1 mouse_genomes_project 13 74891414 74916435 - MGP_CASTEiJ_P0037291 Rhobtb3 protein_coding protein_coding MGP_CASTEiJ_T0012516.1 MGP_CASTEiJ_G0010679.1 mouse_genomes_project 13 18567123 18567757 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011032.1 MGP_CASTEiJ_G0009220.1 mouse_genomes_project 13 108986263 108986520 - Gm27572 misc_RNA misc_RNA MGP_CASTEiJ_T0036454.1 MGP_CASTEiJ_G0019746.1 mouse_genomes_project 13 38871305 38877754 + MGP_CASTEiJ_P0036454 Tmem14c protein_coding protein_coding MGP_CASTEiJ_T0036139.1 MGP_CASTEiJ_G0019614.1 mouse_genomes_project 13 20463441 20465765 - MGP_CASTEiJ_P0036139 Abt1 protein_coding protein_coding MGP_CASTEiJ_T0000853.1 MGP_CASTEiJ_G0000792.1 mouse_genomes_project 13 89661821 89664375 + TEC TEC MGP_CASTEiJ_T0006426.1 MGP_CASTEiJ_G0005338.1 mouse_genomes_project 13 78310402 78324229 + Gm29318 lincRNA lincRNA MGP_CASTEiJ_T0012535.1 MGP_CASTEiJ_G0010698.1 mouse_genomes_project 13 23962348 23962776 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036116.1 MGP_CASTEiJ_G0019594.1 mouse_genomes_project 13 19434355 19435252 + MGP_CASTEiJ_P0036116 Vmn1r197 protein_coding protein_coding MGP_CASTEiJ_T0006458.1 MGP_CASTEiJ_G0005360.1 mouse_genomes_project 13 101009023 101147894 + Gm29502 lincRNA lincRNA MGP_CASTEiJ_T0037036.1 MGP_CASTEiJ_G0019932.1 mouse_genomes_project 13 62251296 62535254 + MGP_CASTEiJ_P0037036 2010111I01Rik protein_coding protein_coding MGP_CASTEiJ_T0037037.1 MGP_CASTEiJ_G0019932.1 mouse_genomes_project 13 62251529 62537881 + MGP_CASTEiJ_P0037037 2010111I01Rik protein_coding protein_coding MGP_CASTEiJ_T0037038.1 MGP_CASTEiJ_G0019932.1 mouse_genomes_project 13 62518284 62561655 + MGP_CASTEiJ_P0037038 2010111I01Rik protein_coding protein_coding MGP_CASTEiJ_T0003359.1 MGP_CASTEiJ_G0003084.1 mouse_genomes_project 13 69263878 69268029 + 1700100L14Rik antisense antisense MGP_CASTEiJ_T0003360.1 MGP_CASTEiJ_G0003084.1 mouse_genomes_project 13 69263917 69268024 + 1700100L14Rik antisense antisense MGP_CASTEiJ_T0009680.1 MGP_CASTEiJ_G0007868.1 mouse_genomes_project 13 53436345 53436482 + Gm24195 miRNA miRNA MGP_CASTEiJ_T0003339.1 MGP_CASTEiJ_G0003073.1 mouse_genomes_project 13 47250169 47254582 + Phf2os1 antisense antisense MGP_CASTEiJ_T0036419.1 MGP_CASTEiJ_G0019732.1 mouse_genomes_project 13 35701423 35733691 - MGP_CASTEiJ_P0036419 Cage1 protein_coding protein_coding MGP_CASTEiJ_T0036420.1 MGP_CASTEiJ_G0019732.1 mouse_genomes_project 13 35701425 35733705 - MGP_CASTEiJ_P0036420 Cage1 protein_coding protein_coding MGP_CASTEiJ_T0036421.1 MGP_CASTEiJ_G0019732.1 mouse_genomes_project 13 35716370 35733837 - MGP_CASTEiJ_P0036421 Cage1 protein_coding protein_coding MGP_CASTEiJ_T0036422.1 MGP_CASTEiJ_G0019732.1 mouse_genomes_project 13 35718663 35733705 - MGP_CASTEiJ_P0036422 Cage1 protein_coding protein_coding MGP_CASTEiJ_T0037524.1 MGP_CASTEiJ_G0020095.1 mouse_genomes_project 13 93962068 93964934 - MGP_CASTEiJ_P0037524 Gm9776 protein_coding protein_coding MGP_CASTEiJ_T0037492.1 MGP_CASTEiJ_G0020084.1 mouse_genomes_project 13 92395649 92409076 + MGP_CASTEiJ_P0037492 Mtx3 protein_coding protein_coding MGP_CASTEiJ_T0036214.1 MGP_CASTEiJ_G0019647.1 mouse_genomes_project 13 21870401 21881355 - MGP_CASTEiJ_P0036214 Gmnn protein_coding protein_coding MGP_CASTEiJ_T0036215.1 MGP_CASTEiJ_G0019647.1 mouse_genomes_project 13 21870401 21881293 - MGP_CASTEiJ_P0036215 Gmnn protein_coding protein_coding MGP_CASTEiJ_T0036216.1 MGP_CASTEiJ_G0019647.1 mouse_genomes_project 13 21870647 21880908 - MGP_CASTEiJ_P0036216 Gmnn protein_coding protein_coding MGP_CASTEiJ_T0036217.1 MGP_CASTEiJ_G0019647.1 mouse_genomes_project 13 21870744 21880872 - MGP_CASTEiJ_P0036217 Gmnn protein_coding protein_coding MGP_CASTEiJ_T0036218.1 MGP_CASTEiJ_G0019647.1 mouse_genomes_project 13 21873136 21881329 - MGP_CASTEiJ_P0036218 Gmnn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0003385.1 MGP_CASTEiJ_G0003095.1 mouse_genomes_project 13 100174380 100175923 - BC001981 antisense antisense MGP_CASTEiJ_T0003386.1 MGP_CASTEiJ_G0003095.1 mouse_genomes_project 13 100175618 100175921 - BC001981 antisense antisense MGP_CASTEiJ_T0009700.1 MGP_CASTEiJ_G0007888.1 mouse_genomes_project 13 96096104 96096217 + Gm25213 miRNA miRNA MGP_CASTEiJ_T0036740.1 MGP_CASTEiJ_G0019837.1 mouse_genomes_project 13 53450786 53473001 - MGP_CASTEiJ_P0036740 Cltb protein_coding protein_coding MGP_CASTEiJ_T0036741.1 MGP_CASTEiJ_G0019837.1 mouse_genomes_project 13 53451924 53457532 - MGP_CASTEiJ_P0036741 Cltb protein_coding protein_coding MGP_CASTEiJ_T0036742.1 MGP_CASTEiJ_G0019837.1 mouse_genomes_project 13 53451971 53472949 - MGP_CASTEiJ_P0036742 Cltb protein_coding protein_coding MGP_CASTEiJ_T0036743.1 MGP_CASTEiJ_G0019837.1 mouse_genomes_project 13 53454429 53472949 - Cltb protein_coding retained_intron MGP_CASTEiJ_T0000854.1 MGP_CASTEiJ_G0000793.1 mouse_genomes_project 13 89809883 89810772 - TEC TEC MGP_CASTEiJ_T0036524.1 MGP_CASTEiJ_G0019769.1 mouse_genomes_project 13 42994130 43083253 - MGP_CASTEiJ_P0036524 Dtnbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036525.1 MGP_CASTEiJ_G0019769.1 mouse_genomes_project 13 42994138 43083332 - MGP_CASTEiJ_P0036525 Dtnbp1 protein_coding protein_coding MGP_CASTEiJ_T0036526.1 MGP_CASTEiJ_G0019769.1 mouse_genomes_project 13 42994144 43083332 - MGP_CASTEiJ_P0036526 Dtnbp1 protein_coding protein_coding MGP_CASTEiJ_T0036837.1 MGP_CASTEiJ_G0019859.1 mouse_genomes_project 13 54341258 54353983 - MGP_CASTEiJ_P0036837 F12 protein_coding protein_coding MGP_CASTEiJ_T0036838.1 MGP_CASTEiJ_G0019859.1 mouse_genomes_project 13 54341364 54353969 - MGP_CASTEiJ_P0036838 F12 protein_coding protein_coding MGP_CASTEiJ_T0100580.1 MGP_CASTEiJ_G0037493.1 mouse_genomes_project 13 74883802 74883934 + Gm24163 snoRNA snoRNA MGP_CASTEiJ_T0037549.1 MGP_CASTEiJ_G0020101.1 mouse_genomes_project 13 94993623 95007954 + MGP_CASTEiJ_P0037549 Zbed3 protein_coding protein_coding MGP_CASTEiJ_T0036431.1 MGP_CASTEiJ_G0019737.1 mouse_genomes_project 13 36222280 36258848 - MGP_CASTEiJ_P0036431 Txndc5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036432.1 MGP_CASTEiJ_G0019737.1 mouse_genomes_project 13 36229748 36258316 - MGP_CASTEiJ_P0036432 Txndc5 protein_coding protein_coding MGP_CASTEiJ_T0036433.1 MGP_CASTEiJ_G0019737.1 mouse_genomes_project 13 36229748 36259226 - MGP_CASTEiJ_P0036433 Txndc5 protein_coding protein_coding MGP_CASTEiJ_T0036434.1 MGP_CASTEiJ_G0019737.1 mouse_genomes_project 13 36229748 36258892 - MGP_CASTEiJ_P0036434 Txndc5 protein_coding protein_coding MGP_CASTEiJ_T0036435.1 MGP_CASTEiJ_G0019737.1 mouse_genomes_project 13 36229752 36235418 - Txndc5 protein_coding retained_intron MGP_CASTEiJ_T0009669.1 MGP_CASTEiJ_G0007857.1 mouse_genomes_project 13 29077582 29077680 - Gm27516 miRNA miRNA MGP_CASTEiJ_T0037717.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 102955662 103014739 - MGP_CASTEiJ_P0037717 Mast4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037718.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 102959294 103579941 - MGP_CASTEiJ_P0037718 Mast4 protein_coding protein_coding MGP_CASTEiJ_T0037719.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 102959299 103580209 - MGP_CASTEiJ_P0037719 Mast4 protein_coding protein_coding MGP_CASTEiJ_T0037720.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 102961606 103336121 - MGP_CASTEiJ_P0037720 Mast4 protein_coding protein_coding MGP_CASTEiJ_T0037721.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 102961824 103188960 - MGP_CASTEiJ_P0037721 Mast4 protein_coding protein_coding MGP_CASTEiJ_T0037722.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 102961824 103136315 - MGP_CASTEiJ_P0037722 Mast4 protein_coding protein_coding MGP_CASTEiJ_T0037723.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 102968789 103135993 - MGP_CASTEiJ_P0037723 Mast4 protein_coding protein_coding MGP_CASTEiJ_T0037724.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 102982661 103188848 - MGP_CASTEiJ_P0037724 Mast4 protein_coding protein_coding MGP_CASTEiJ_T0037725.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 102995182 102999432 - Mast4 protein_coding retained_intron MGP_CASTEiJ_T0037726.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 103006079 103010316 - Mast4 protein_coding retained_intron MGP_CASTEiJ_T0037727.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 103026178 103336104 - MGP_CASTEiJ_P0037727 Mast4 protein_coding protein_coding MGP_CASTEiJ_T0037728.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 103029011 103032879 - Mast4 protein_coding retained_intron MGP_CASTEiJ_T0037729.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 103080422 103580209 - MGP_CASTEiJ_P0037729 Mast4 protein_coding protein_coding MGP_CASTEiJ_T0037730.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 103081575 103136284 - Mast4 protein_coding retained_intron MGP_CASTEiJ_T0037731.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 103256655 103580211 - Mast4 protein_coding retained_intron MGP_CASTEiJ_T0037732.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 103294068 103580246 - Mast4 protein_coding processed_transcript MGP_CASTEiJ_T0037733.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 103308053 103580200 - Mast4 protein_coding processed_transcript MGP_CASTEiJ_T0037734.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 103333452 103336120 - Mast4 protein_coding retained_intron MGP_CASTEiJ_T0037735.1 MGP_CASTEiJ_G0020158.1 mouse_genomes_project 13 103578720 103580241 - Mast4 protein_coding retained_intron MGP_CASTEiJ_T0037103.1 MGP_CASTEiJ_G0019954.1 mouse_genomes_project 13 64586782 64621670 + MGP_CASTEiJ_P0037103 protein_coding protein_coding MGP_CASTEiJ_T0037104.1 MGP_CASTEiJ_G0019954.1 mouse_genomes_project 13 64586820 64603156 + protein_coding retained_intron MGP_CASTEiJ_T0037105.1 MGP_CASTEiJ_G0019954.1 mouse_genomes_project 13 64586871 64600643 + MGP_CASTEiJ_P0037105 protein_coding protein_coding MGP_CASTEiJ_T0037106.1 MGP_CASTEiJ_G0019954.1 mouse_genomes_project 13 64587276 64613248 + MGP_CASTEiJ_P0037106 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009678.1 MGP_CASTEiJ_G0007866.1 mouse_genomes_project 13 49097983 49098086 - Mir683-1 miRNA miRNA MGP_CASTEiJ_T0037100.1 MGP_CASTEiJ_G0019951.1 mouse_genomes_project 13 64449219 64450146 + MGP_CASTEiJ_P0037100 Olfr466 protein_coding protein_coding MGP_CASTEiJ_T0036234.1 MGP_CASTEiJ_G0019655.1 mouse_genomes_project 13 22169654 22237528 + MGP_CASTEiJ_P0036234 Dcdc2a protein_coding protein_coding MGP_CASTEiJ_T0036235.1 MGP_CASTEiJ_G0019655.1 mouse_genomes_project 13 22169903 22335791 + MGP_CASTEiJ_P0036235 Dcdc2a protein_coding protein_coding MGP_CASTEiJ_T0036236.1 MGP_CASTEiJ_G0019655.1 mouse_genomes_project 13 22212050 22235398 + Dcdc2a protein_coding processed_transcript MGP_CASTEiJ_T0036237.1 MGP_CASTEiJ_G0019655.1 mouse_genomes_project 13 22310229 22330720 + Dcdc2a protein_coding processed_transcript MGP_CASTEiJ_T0011026.1 MGP_CASTEiJ_G0009214.1 mouse_genomes_project 13 55719711 55719836 + Gm27834 misc_RNA misc_RNA MGP_CASTEiJ_T0037089.1 MGP_CASTEiJ_G0019943.1 mouse_genomes_project 13 63721481 63731036 + MGP_CASTEiJ_P0037089 Cdk20 protein_coding protein_coding MGP_CASTEiJ_T0036581.1 MGP_CASTEiJ_G0019788.1 mouse_genomes_project 13 46851501 46852820 + MGP_CASTEiJ_P0036581 A830005F24Rik protein_coding protein_coding MGP_CASTEiJ_T0003387.1 MGP_CASTEiJ_G0003096.1 mouse_genomes_project 13 102988786 102990417 + 1700099I09Rik antisense antisense MGP_CASTEiJ_T0003388.1 MGP_CASTEiJ_G0003096.1 mouse_genomes_project 13 102988801 102990383 + 1700099I09Rik antisense antisense MGP_CASTEiJ_T0037797.1 MGP_CASTEiJ_G0020181.1 mouse_genomes_project 13 108509908 108628534 - MGP_CASTEiJ_P0037797 Ndufaf2 protein_coding protein_coding MGP_CASTEiJ_T0006361.1 MGP_CASTEiJ_G0005294.1 mouse_genomes_project 13 28729147 28823922 + Gm11376 lincRNA lincRNA MGP_CASTEiJ_T0037139.1 MGP_CASTEiJ_G0019969.1 mouse_genomes_project 13 65960341 65974981 - MGP_CASTEiJ_P0037139 Zfp458 protein_coding protein_coding MGP_CASTEiJ_T0035992.1 MGP_CASTEiJ_G0019529.1 mouse_genomes_project 13 12872507 12887572 + MGP_CASTEiJ_P0035992 Inhba protein_coding protein_coding MGP_CASTEiJ_T0035993.1 MGP_CASTEiJ_G0019529.1 mouse_genomes_project 13 12875141 12887595 + MGP_CASTEiJ_P0035993 Inhba protein_coding protein_coding MGP_CASTEiJ_T0035984.1 MGP_CASTEiJ_G0019525.1 mouse_genomes_project 13 11459990 11462648 - MGP_CASTEiJ_P0035984 Mrpl32 protein_coding protein_coding MGP_CASTEiJ_T0036304.1 MGP_CASTEiJ_G0019690.1 mouse_genomes_project 13 28991201 28994396 - MGP_CASTEiJ_P0036304 A530084C06Rik protein_coding protein_coding MGP_CASTEiJ_T0099342.1 MGP_CASTEiJ_G0036255.1 mouse_genomes_project 13 29194515 29194623 - Gm25186 snRNA snRNA MGP_CASTEiJ_T0037000.1 MGP_CASTEiJ_G0019905.1 mouse_genomes_project 13 58887870 58894584 - MGP_CASTEiJ_P0037000 4921517D22Rik protein_coding protein_coding MGP_CASTEiJ_T0037415.1 MGP_CASTEiJ_G0020062.1 mouse_genomes_project 13 89063803 89152489 - MGP_CASTEiJ_P0037415 Vcan protein_coding protein_coding MGP_CASTEiJ_T0037416.1 MGP_CASTEiJ_G0020062.1 mouse_genomes_project 13 89064831 89152302 - MGP_CASTEiJ_P0037416 Vcan protein_coding protein_coding MGP_CASTEiJ_T0037417.1 MGP_CASTEiJ_G0020062.1 mouse_genomes_project 13 89065136 89152314 - MGP_CASTEiJ_P0037417 Vcan protein_coding protein_coding MGP_CASTEiJ_T0037418.1 MGP_CASTEiJ_G0020062.1 mouse_genomes_project 13 89065508 89086717 - MGP_CASTEiJ_P0037418 Vcan protein_coding protein_coding MGP_CASTEiJ_T0037419.1 MGP_CASTEiJ_G0020062.1 mouse_genomes_project 13 89065547 89152224 - MGP_CASTEiJ_P0037419 Vcan protein_coding protein_coding MGP_CASTEiJ_T0037420.1 MGP_CASTEiJ_G0020062.1 mouse_genomes_project 13 89066146 89087503 - MGP_CASTEiJ_P0037420 Vcan protein_coding protein_coding MGP_CASTEiJ_T0037421.1 MGP_CASTEiJ_G0020062.1 mouse_genomes_project 13 89076387 89136588 - MGP_CASTEiJ_P0037421 Vcan protein_coding unknown_likely_coding MGP_CASTEiJ_T0037422.1 MGP_CASTEiJ_G0020062.1 mouse_genomes_project 13 89119932 89131912 - Vcan protein_coding retained_intron MGP_CASTEiJ_T0037423.1 MGP_CASTEiJ_G0020062.1 mouse_genomes_project 13 89120480 89152298 - MGP_CASTEiJ_P0037423 Vcan protein_coding protein_coding MGP_CASTEiJ_T0037424.1 MGP_CASTEiJ_G0020062.1 mouse_genomes_project 13 89135383 89150387 - MGP_CASTEiJ_P0037424 Vcan protein_coding protein_coding MGP_CASTEiJ_T0009655.1 MGP_CASTEiJ_G0007843.1 mouse_genomes_project 13 457314 457438 - Gm22460 miRNA miRNA MGP_CASTEiJ_T0035899.1 MGP_CASTEiJ_G0019503.1 mouse_genomes_project 13 5488389 5514180 - MGP_CASTEiJ_P0035899 Gtpbp4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035954.1 MGP_CASTEiJ_G0019518.1 mouse_genomes_project 13 10393221 10590197 + MGP_CASTEiJ_P0035954 Lyst protein_coding protein_coding MGP_CASTEiJ_T0037259.1 MGP_CASTEiJ_G0020025.1 mouse_genomes_project 13 73065495 73148135 - MGP_CASTEiJ_P0037259 Ahrr protein_coding protein_coding MGP_CASTEiJ_T0037260.1 MGP_CASTEiJ_G0020025.1 mouse_genomes_project 13 73067609 73148101 - MGP_CASTEiJ_P0037260 Ahrr protein_coding protein_coding MGP_CASTEiJ_T0037261.1 MGP_CASTEiJ_G0020025.1 mouse_genomes_project 13 73070480 73112393 - Ahrr protein_coding retained_intron MGP_CASTEiJ_T0037262.1 MGP_CASTEiJ_G0020025.1 mouse_genomes_project 13 73077443 73115515 - Ahrr protein_coding processed_transcript MGP_CASTEiJ_T0037263.1 MGP_CASTEiJ_G0020025.1 mouse_genomes_project 13 73079235 73116271 - Ahrr protein_coding processed_transcript MGP_CASTEiJ_T0012545.1 MGP_CASTEiJ_G0010708.1 mouse_genomes_project 13 28144849 28145109 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000856.1 MGP_CASTEiJ_G0000795.1 mouse_genomes_project 13 94238926 94239573 + TEC TEC MGP_CASTEiJ_T0003391.1 MGP_CASTEiJ_G0003099.1 mouse_genomes_project 13 107153812 107159492 + antisense antisense MGP_CASTEiJ_T0035986.1 MGP_CASTEiJ_G0019527.1 mouse_genomes_project 13 11480551 11488240 + MGP_CASTEiJ_P0035986 AW209491 protein_coding protein_coding MGP_CASTEiJ_T0035987.1 MGP_CASTEiJ_G0019527.1 mouse_genomes_project 13 11480564 11488240 + MGP_CASTEiJ_P0035987 AW209491 protein_coding protein_coding MGP_CASTEiJ_T0003336.1 MGP_CASTEiJ_G0003070.1 mouse_genomes_project 13 39748993 39755593 + Gm28564 antisense antisense MGP_CASTEiJ_T0037441.1 MGP_CASTEiJ_G0020070.1 mouse_genomes_project 13 90967877 91214476 + Ssbp2 protein_coding processed_transcript MGP_CASTEiJ_T0037442.1 MGP_CASTEiJ_G0020070.1 mouse_genomes_project 13 90971104 91230578 + MGP_CASTEiJ_P0037442 Ssbp2 protein_coding protein_coding MGP_CASTEiJ_T0037443.1 MGP_CASTEiJ_G0020070.1 mouse_genomes_project 13 90971145 91228390 + MGP_CASTEiJ_P0037443 Ssbp2 protein_coding protein_coding MGP_CASTEiJ_T0037444.1 MGP_CASTEiJ_G0020070.1 mouse_genomes_project 13 90971181 91055738 + MGP_CASTEiJ_P0037444 Ssbp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037445.1 MGP_CASTEiJ_G0020070.1 mouse_genomes_project 13 90971214 91195692 + Ssbp2 protein_coding retained_intron MGP_CASTEiJ_T0037446.1 MGP_CASTEiJ_G0020070.1 mouse_genomes_project 13 90971217 91079563 + Ssbp2 protein_coding retained_intron MGP_CASTEiJ_T0037447.1 MGP_CASTEiJ_G0020070.1 mouse_genomes_project 13 90971235 91038671 + Ssbp2 protein_coding retained_intron MGP_CASTEiJ_T0037448.1 MGP_CASTEiJ_G0020070.1 mouse_genomes_project 13 90971241 91229226 + MGP_CASTEiJ_P0037448 Ssbp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037449.1 MGP_CASTEiJ_G0020070.1 mouse_genomes_project 13 91193719 91218444 + Ssbp2 protein_coding retained_intron MGP_CASTEiJ_T0037157.1 MGP_CASTEiJ_G0019980.1 mouse_genomes_project 13 66247861 66285181 - MGP_CASTEiJ_P0037157 Gm26965 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036268.1 MGP_CASTEiJ_G0019673.1 mouse_genomes_project 13 24843025 24853179 - MGP_CASTEiJ_P0036268 Prl7a1 protein_coding protein_coding MGP_CASTEiJ_T0036269.1 MGP_CASTEiJ_G0019673.1 mouse_genomes_project 13 24843025 24853169 - MGP_CASTEiJ_P0036269 Prl7a1 protein_coding protein_coding MGP_CASTEiJ_T0036710.1 MGP_CASTEiJ_G0019828.1 mouse_genomes_project 13 52886353 52924521 + MGP_CASTEiJ_P0036710 Sfxn1 protein_coding protein_coding MGP_CASTEiJ_T0037840.1 MGP_CASTEiJ_G0020189.1 mouse_genomes_project 13 111881257 111883983 + MGP_CASTEiJ_P0037840 Actbl2 protein_coding protein_coding MGP_CASTEiJ_T0006374.1 MGP_CASTEiJ_G0005303.1 mouse_genomes_project 13 32495736 32516273 + Gm16984 lincRNA lincRNA MGP_CASTEiJ_T0006375.1 MGP_CASTEiJ_G0005303.1 mouse_genomes_project 13 32495789 32525252 + Gm16984 lincRNA lincRNA MGP_CASTEiJ_T0037816.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 108937879 109345573 + Pde4d protein_coding processed_transcript MGP_CASTEiJ_T0037817.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 108937940 109344584 + Pde4d protein_coding processed_transcript MGP_CASTEiJ_T0037818.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 109132408 110502030 + MGP_CASTEiJ_P0037818 Pde4d protein_coding protein_coding MGP_CASTEiJ_T0037819.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 109344606 110501907 + MGP_CASTEiJ_P0037819 Pde4d protein_coding protein_coding MGP_CASTEiJ_T0037820.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 109623214 109854523 + Pde4d protein_coding processed_transcript MGP_CASTEiJ_T0037821.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 109623337 110316522 + Pde4d protein_coding retained_intron MGP_CASTEiJ_T0037822.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 109623619 110501943 + MGP_CASTEiJ_P0037822 Pde4d protein_coding protein_coding MGP_CASTEiJ_T0037823.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 109774666 110501927 + MGP_CASTEiJ_P0037823 Pde4d protein_coding protein_coding MGP_CASTEiJ_T0037824.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 109954628 110501927 + MGP_CASTEiJ_P0037824 Pde4d protein_coding protein_coding MGP_CASTEiJ_T0037825.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 110106498 110501907 + MGP_CASTEiJ_P0037825 Pde4d protein_coding protein_coding MGP_CASTEiJ_T0037826.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 110168650 110501927 + MGP_CASTEiJ_P0037826 Pde4d protein_coding protein_coding MGP_CASTEiJ_T0037827.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 110230837 110502030 + MGP_CASTEiJ_P0037827 Pde4d protein_coding protein_coding MGP_CASTEiJ_T0037828.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 110230857 110316519 + Pde4d protein_coding retained_intron MGP_CASTEiJ_T0037829.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 110306947 110311323 + Pde4d protein_coding processed_transcript MGP_CASTEiJ_T0037830.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 110449631 110501943 + MGP_CASTEiJ_P0037830 Pde4d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037831.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 110449635 110504012 + MGP_CASTEiJ_P0037831 Pde4d protein_coding protein_coding MGP_CASTEiJ_T0037832.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 110469546 110487520 + Pde4d protein_coding retained_intron MGP_CASTEiJ_T0037833.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 110471709 110501907 + MGP_CASTEiJ_P0037833 Pde4d protein_coding protein_coding MGP_CASTEiJ_T0037834.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 110473835 110501927 + MGP_CASTEiJ_P0037834 Pde4d protein_coding protein_coding MGP_CASTEiJ_T0037835.1 MGP_CASTEiJ_G0020185.1 mouse_genomes_project 13 110483592 110498924 + MGP_CASTEiJ_P0037835 Pde4d protein_coding protein_coding MGP_CASTEiJ_T0036500.1 MGP_CASTEiJ_G0019763.1 mouse_genomes_project 13 41383987 41388451 + MGP_CASTEiJ_P0036500 Nol7 protein_coding protein_coding MGP_CASTEiJ_T0036619.1 MGP_CASTEiJ_G0019800.1 mouse_genomes_project 13 47872212 48076722 - MGP_CASTEiJ_P0036619 Cenpp protein_coding protein_coding MGP_CASTEiJ_T0036308.1 MGP_CASTEiJ_G0019694.1 mouse_genomes_project 13 29279554 29829104 - MGP_CASTEiJ_P0036308 Gmds protein_coding protein_coding MGP_CASTEiJ_T0036309.1 MGP_CASTEiJ_G0019694.1 mouse_genomes_project 13 29575638 29828977 - Gmds protein_coding retained_intron MGP_CASTEiJ_T0036310.1 MGP_CASTEiJ_G0019694.1 mouse_genomes_project 13 29639214 29716208 - Gmds protein_coding processed_transcript MGP_CASTEiJ_T0036311.1 MGP_CASTEiJ_G0019694.1 mouse_genomes_project 13 29714196 29829016 - MGP_CASTEiJ_P0036311 Gmds protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006415.1 MGP_CASTEiJ_G0005330.1 mouse_genomes_project 13 57220967 57221907 + 1700066J03Rik lincRNA lincRNA MGP_CASTEiJ_T0037264.1 MGP_CASTEiJ_G0020026.1 mouse_genomes_project 13 73160375 73175831 - MGP_CASTEiJ_P0037264 Pdcd6 protein_coding protein_coding MGP_CASTEiJ_T0035907.1 MGP_CASTEiJ_G0019505.1 mouse_genomes_project 13 5818661 6210430 + MGP_CASTEiJ_P0035907 Dip2c protein_coding protein_coding MGP_CASTEiJ_T0035908.1 MGP_CASTEiJ_G0019505.1 mouse_genomes_project 13 5819066 6207683 + MGP_CASTEiJ_P0035908 Dip2c protein_coding protein_coding MGP_CASTEiJ_T0035909.1 MGP_CASTEiJ_G0019505.1 mouse_genomes_project 13 5819115 6207683 + MGP_CASTEiJ_P0035909 Dip2c protein_coding protein_coding MGP_CASTEiJ_T0036025.1 MGP_CASTEiJ_G0019542.1 mouse_genomes_project 13 16614649 16672233 - MGP_CASTEiJ_P0036025 Nme8 protein_coding protein_coding MGP_CASTEiJ_T0036026.1 MGP_CASTEiJ_G0019542.1 mouse_genomes_project 13 16614649 16672267 - MGP_CASTEiJ_P0036026 Nme8 protein_coding protein_coding MGP_CASTEiJ_T0036027.1 MGP_CASTEiJ_G0019542.1 mouse_genomes_project 13 16646924 16663776 - Nme8 protein_coding processed_transcript MGP_CASTEiJ_T0036877.1 MGP_CASTEiJ_G0019871.1 mouse_genomes_project 13 54643253 54655230 + MGP_CASTEiJ_P0036877 B230219D22Rik protein_coding protein_coding MGP_CASTEiJ_T0006387.1 MGP_CASTEiJ_G0005313.1 mouse_genomes_project 13 42448906 42504414 - Gm27007 lincRNA lincRNA MGP_CASTEiJ_T0037018.1 MGP_CASTEiJ_G0019917.1 mouse_genomes_project 13 60161380 60163789 - MGP_CASTEiJ_P0037018 Tpbpb protein_coding protein_coding MGP_CASTEiJ_T0102064.1 MGP_CASTEiJ_G0038789.1 mouse_genomes_project 13 31208934 31209724 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0036502.1 MGP_CASTEiJ_G0019765.1 mouse_genomes_project 13 41536274 41556309 - MGP_CASTEiJ_P0036502 Mcur1 protein_coding protein_coding MGP_CASTEiJ_T0100588.1 MGP_CASTEiJ_G0037501.1 mouse_genomes_project 13 91250355 91250483 + Gm22778 snoRNA snoRNA MGP_CASTEiJ_T0100577.1 MGP_CASTEiJ_G0037490.1 mouse_genomes_project 13 68851696 68851824 + Gm26018 snoRNA snoRNA MGP_CASTEiJ_T0037737.1 MGP_CASTEiJ_G0020160.1 mouse_genomes_project 13 104078883 104180668 - MGP_CASTEiJ_P0037737 Erbin protein_coding protein_coding MGP_CASTEiJ_T0037738.1 MGP_CASTEiJ_G0020160.1 mouse_genomes_project 13 104078887 104180449 - MGP_CASTEiJ_P0037738 Erbin protein_coding protein_coding MGP_CASTEiJ_T0037739.1 MGP_CASTEiJ_G0020160.1 mouse_genomes_project 13 104078887 104152013 - MGP_CASTEiJ_P0037739 Erbin protein_coding protein_coding MGP_CASTEiJ_T0037740.1 MGP_CASTEiJ_G0020160.1 mouse_genomes_project 13 104079702 104180449 - MGP_CASTEiJ_P0037740 Erbin protein_coding protein_coding MGP_CASTEiJ_T0037741.1 MGP_CASTEiJ_G0020160.1 mouse_genomes_project 13 104079702 104180449 - MGP_CASTEiJ_P0037741 Erbin protein_coding protein_coding MGP_CASTEiJ_T0037742.1 MGP_CASTEiJ_G0020160.1 mouse_genomes_project 13 104079702 104180449 - MGP_CASTEiJ_P0037742 Erbin protein_coding protein_coding MGP_CASTEiJ_T0037743.1 MGP_CASTEiJ_G0020160.1 mouse_genomes_project 13 104103556 104180668 - Erbin protein_coding retained_intron MGP_CASTEiJ_T0100581.1 MGP_CASTEiJ_G0037494.1 mouse_genomes_project 13 74936953 74937084 - Gm23319 snoRNA snoRNA MGP_CASTEiJ_T0037896.1 MGP_CASTEiJ_G0020210.1 mouse_genomes_project 13 114382843 114410315 - MGP_CASTEiJ_P0037896 Snx18 protein_coding protein_coding MGP_CASTEiJ_T0037897.1 MGP_CASTEiJ_G0020210.1 mouse_genomes_project 13 114383269 114410174 - MGP_CASTEiJ_P0037897 Snx18 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037796.1 MGP_CASTEiJ_G0020180.1 mouse_genomes_project 13 108503775 108506491 + MGP_CASTEiJ_P0037796 Smim15 protein_coding protein_coding MGP_CASTEiJ_T0036127.1 MGP_CASTEiJ_G0019605.1 mouse_genomes_project 13 19997864 19999708 + MGP_CASTEiJ_P0036127 Vmn1r213 protein_coding protein_coding MGP_CASTEiJ_T0036827.1 MGP_CASTEiJ_G0019853.1 mouse_genomes_project 13 54230929 54233865 + MGP_CASTEiJ_P0036827 Prelid1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002511.1 MGP_CASTEiJ_G0002420.1 mouse_genomes_project 13 16142614 16143189 + MGP_CASTEiJ_P0002511 Tcrg-V6 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002512.1 MGP_CASTEiJ_G0002420.1 mouse_genomes_project 13 16142626 16143189 + MGP_CASTEiJ_P0002512 Tcrg-V6 TR_V_gene TR_V_gene MGP_CASTEiJ_T0037875.1 MGP_CASTEiJ_G0020198.1 mouse_genomes_project 13 113385883 113469398 + MGP_CASTEiJ_P0037875 Slc38a9 protein_coding protein_coding MGP_CASTEiJ_T0036878.1 MGP_CASTEiJ_G0019872.1 mouse_genomes_project 13 54669124 54681320 + MGP_CASTEiJ_P0036878 Txndc15 protein_coding protein_coding MGP_CASTEiJ_T0100589.1 MGP_CASTEiJ_G0037502.1 mouse_genomes_project 13 94999019 94999157 + Snora47 snoRNA snoRNA MGP_CASTEiJ_T0000842.1 MGP_CASTEiJ_G0000781.1 mouse_genomes_project 13 46881002 46883394 - TEC TEC MGP_CASTEiJ_T0009685.1 MGP_CASTEiJ_G0007873.1 mouse_genomes_project 13 57398201 57398307 - Mir6369 miRNA miRNA MGP_CASTEiJ_T0006432.1 MGP_CASTEiJ_G0005342.1 mouse_genomes_project 13 80869031 80875463 - Gm17259 lincRNA lincRNA MGP_CASTEiJ_T0036550.1 MGP_CASTEiJ_G0019780.1 mouse_genomes_project 13 44955755 45154915 - MGP_CASTEiJ_P0036550 Kif13a protein_coding protein_coding MGP_CASTEiJ_T0036551.1 MGP_CASTEiJ_G0019780.1 mouse_genomes_project 13 44957273 45154776 - MGP_CASTEiJ_P0036551 Kif13a protein_coding unknown_likely_coding MGP_CASTEiJ_T0101849.1 MGP_CASTEiJ_G0038597.1 mouse_genomes_project 13 112393881 112396784 - unitary_pseudogene unitary_pseudogene MGP_CASTEiJ_T0037681.1 MGP_CASTEiJ_G0020147.1 mouse_genomes_project 13 100729322 100754370 - MGP_CASTEiJ_P0037681 Marveld2 protein_coding protein_coding MGP_CASTEiJ_T0037682.1 MGP_CASTEiJ_G0020147.1 mouse_genomes_project 13 100729322 100754343 - MGP_CASTEiJ_P0037682 Marveld2 protein_coding protein_coding MGP_CASTEiJ_T0037683.1 MGP_CASTEiJ_G0020147.1 mouse_genomes_project 13 100730591 100754310 - MGP_CASTEiJ_P0037683 Marveld2 protein_coding protein_coding MGP_CASTEiJ_T0037121.1 MGP_CASTEiJ_G0019958.1 mouse_genomes_project 13 65558580 65624099 + MGP_CASTEiJ_P0037121 Ptdss1 protein_coding protein_coding MGP_CASTEiJ_T0037122.1 MGP_CASTEiJ_G0019958.1 mouse_genomes_project 13 65559221 65687486 + MGP_CASTEiJ_P0037122 Ptdss1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0000852.1 MGP_CASTEiJ_G0000791.1 mouse_genomes_project 13 89578873 89579692 + TEC TEC MGP_CASTEiJ_T0006366.1 MGP_CASTEiJ_G0005298.1 mouse_genomes_project 13 28804048 28835855 - Gm11375 lincRNA lincRNA MGP_CASTEiJ_T0006367.1 MGP_CASTEiJ_G0005298.1 mouse_genomes_project 13 28834701 28835897 - Gm11375 lincRNA lincRNA MGP_CASTEiJ_T0000839.1 MGP_CASTEiJ_G0000778.1 mouse_genomes_project 13 37037280 37037643 + TEC TEC MGP_CASTEiJ_T0037450.1 MGP_CASTEiJ_G0020071.1 mouse_genomes_project 13 91262765 91321674 + MGP_CASTEiJ_P0037450 Acot12 protein_coding protein_coding MGP_CASTEiJ_T0037451.1 MGP_CASTEiJ_G0020071.1 mouse_genomes_project 13 91262786 91299515 + Acot12 protein_coding retained_intron MGP_CASTEiJ_T0037452.1 MGP_CASTEiJ_G0020071.1 mouse_genomes_project 13 91313676 91320427 + Acot12 protein_coding processed_transcript MGP_CASTEiJ_T0036701.1 MGP_CASTEiJ_G0019822.1 mouse_genomes_project 13 51683161 51697068 - MGP_CASTEiJ_P0036701 Nfil3 protein_coding protein_coding MGP_CASTEiJ_T0037862.1 MGP_CASTEiJ_G0020195.1 mouse_genomes_project 13 113177175 113225763 + MGP_CASTEiJ_P0037862 Il6st protein_coding protein_coding MGP_CASTEiJ_T0037863.1 MGP_CASTEiJ_G0020195.1 mouse_genomes_project 13 113177186 113220195 + MGP_CASTEiJ_P0037863 Il6st protein_coding protein_coding MGP_CASTEiJ_T0037864.1 MGP_CASTEiJ_G0020195.1 mouse_genomes_project 13 113177217 113197931 + MGP_CASTEiJ_P0037864 Il6st protein_coding protein_coding MGP_CASTEiJ_T0037865.1 MGP_CASTEiJ_G0020195.1 mouse_genomes_project 13 113177346 113220249 + MGP_CASTEiJ_P0037865 Il6st protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037866.1 MGP_CASTEiJ_G0020195.1 mouse_genomes_project 13 113180659 113192950 + MGP_CASTEiJ_P0037866 Il6st protein_coding protein_coding MGP_CASTEiJ_T0037867.1 MGP_CASTEiJ_G0020195.1 mouse_genomes_project 13 113185698 113216792 + MGP_CASTEiJ_P0037867 Il6st protein_coding protein_coding MGP_CASTEiJ_T0037868.1 MGP_CASTEiJ_G0020195.1 mouse_genomes_project 13 113187955 113222568 + MGP_CASTEiJ_P0037868 Il6st protein_coding protein_coding MGP_CASTEiJ_T0037869.1 MGP_CASTEiJ_G0020195.1 mouse_genomes_project 13 113187993 113219463 + MGP_CASTEiJ_P0037869 Il6st protein_coding protein_coding MGP_CASTEiJ_T0037870.1 MGP_CASTEiJ_G0020195.1 mouse_genomes_project 13 113187993 113219463 + MGP_CASTEiJ_P0037870 Il6st protein_coding protein_coding MGP_CASTEiJ_T0037871.1 MGP_CASTEiJ_G0020195.1 mouse_genomes_project 13 113187993 113220149 + MGP_CASTEiJ_P0037871 Il6st protein_coding protein_coding MGP_CASTEiJ_T0037493.1 MGP_CASTEiJ_G0020085.1 mouse_genomes_project 13 92592624 92692151 - MGP_CASTEiJ_P0037493 Cmya5 protein_coding protein_coding MGP_CASTEiJ_T0037494.1 MGP_CASTEiJ_G0020085.1 mouse_genomes_project 13 92610756 92691968 - MGP_CASTEiJ_P0037494 Cmya5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036832.1 MGP_CASTEiJ_G0019856.1 mouse_genomes_project 13 54292004 54307042 + MGP_CASTEiJ_P0036832 Rgs14 protein_coding protein_coding MGP_CASTEiJ_T0036833.1 MGP_CASTEiJ_G0019856.1 mouse_genomes_project 13 54292043 54301817 + MGP_CASTEiJ_P0036833 Rgs14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036834.1 MGP_CASTEiJ_G0019856.1 mouse_genomes_project 13 54301540 54307041 + Rgs14 protein_coding retained_intron MGP_CASTEiJ_T0037928.1 MGP_CASTEiJ_G0020220.1 mouse_genomes_project 13 117908319 118099500 - MGP_CASTEiJ_P0037928 Parp8 protein_coding protein_coding MGP_CASTEiJ_T0036897.1 MGP_CASTEiJ_G0019880.1 mouse_genomes_project 13 55356333 55359034 + MGP_CASTEiJ_P0036897 protein_coding protein_coding MGP_CASTEiJ_T0006339.1 MGP_CASTEiJ_G0005278.1 mouse_genomes_project 13 2369906 2372152 - 1700016G22Rik lincRNA lincRNA MGP_CASTEiJ_T0006340.1 MGP_CASTEiJ_G0005278.1 mouse_genomes_project 13 2369906 2372526 - 1700016G22Rik lincRNA lincRNA MGP_CASTEiJ_T0037093.1 MGP_CASTEiJ_G0019947.1 mouse_genomes_project 13 64321480 64326755 + MGP_CASTEiJ_P0037093 Spata31d1c protein_coding protein_coding MGP_CASTEiJ_T0036374.1 MGP_CASTEiJ_G0019718.1 mouse_genomes_project 13 32429750 32439805 - MGP_CASTEiJ_P0036374 Fam217a protein_coding protein_coding MGP_CASTEiJ_T0099358.1 MGP_CASTEiJ_G0036271.1 mouse_genomes_project 13 89344701 89344803 - Gm24498 snRNA snRNA MGP_CASTEiJ_T0012595.1 MGP_CASTEiJ_G0010758.1 mouse_genomes_project 13 113633867 113634844 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016613.1 MGP_CASTEiJ_G0014567.1 mouse_genomes_project 13 32152695 32169056 + Gm15908 processed_transcript processed_transcript MGP_CASTEiJ_T0036744.1 MGP_CASTEiJ_G0019838.1 mouse_genomes_project 13 53485040 53530579 + MGP_CASTEiJ_P0036744 Faf2 protein_coding protein_coding MGP_CASTEiJ_T0036745.1 MGP_CASTEiJ_G0019838.1 mouse_genomes_project 13 53485060 53506893 + MGP_CASTEiJ_P0036745 Faf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036746.1 MGP_CASTEiJ_G0019838.1 mouse_genomes_project 13 53485080 53528092 + MGP_CASTEiJ_P0036746 Faf2 protein_coding protein_coding MGP_CASTEiJ_T0036747.1 MGP_CASTEiJ_G0019838.1 mouse_genomes_project 13 53485091 53513666 + MGP_CASTEiJ_P0036747 Faf2 protein_coding protein_coding MGP_CASTEiJ_T0036748.1 MGP_CASTEiJ_G0019838.1 mouse_genomes_project 13 53485091 53513777 + MGP_CASTEiJ_P0036748 Faf2 protein_coding protein_coding MGP_CASTEiJ_T0036749.1 MGP_CASTEiJ_G0019838.1 mouse_genomes_project 13 53485094 53521716 + MGP_CASTEiJ_P0036749 Faf2 protein_coding protein_coding MGP_CASTEiJ_T0036750.1 MGP_CASTEiJ_G0019838.1 mouse_genomes_project 13 53506895 53520871 + MGP_CASTEiJ_P0036750 Faf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036751.1 MGP_CASTEiJ_G0019838.1 mouse_genomes_project 13 53516788 53520896 + Faf2 protein_coding retained_intron MGP_CASTEiJ_T0099340.1 MGP_CASTEiJ_G0036253.1 mouse_genomes_project 13 21586498 21586601 - Gm22013 snRNA snRNA MGP_CASTEiJ_T0035858.1 MGP_CASTEiJ_G0019498.1 mouse_genomes_project 13 3133901 3143172 - Pfkp protein_coding retained_intron MGP_CASTEiJ_T0035859.1 MGP_CASTEiJ_G0019498.1 mouse_genomes_project 13 3133901 3197134 - MGP_CASTEiJ_P0035859 Pfkp protein_coding protein_coding MGP_CASTEiJ_T0035860.1 MGP_CASTEiJ_G0019498.1 mouse_genomes_project 13 3135334 3197082 - MGP_CASTEiJ_P0035860 Pfkp protein_coding protein_coding MGP_CASTEiJ_T0035861.1 MGP_CASTEiJ_G0019498.1 mouse_genomes_project 13 3135620 3141256 - MGP_CASTEiJ_P0035861 Pfkp protein_coding protein_coding MGP_CASTEiJ_T0035862.1 MGP_CASTEiJ_G0019498.1 mouse_genomes_project 13 3136628 3152985 - MGP_CASTEiJ_P0035862 Pfkp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035863.1 MGP_CASTEiJ_G0019498.1 mouse_genomes_project 13 3136628 3152103 - MGP_CASTEiJ_P0035863 Pfkp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035864.1 MGP_CASTEiJ_G0019498.1 mouse_genomes_project 13 3138174 3197115 - MGP_CASTEiJ_P0035864 Pfkp protein_coding unknown_likely_coding MGP_CASTEiJ_T0035865.1 MGP_CASTEiJ_G0019498.1 mouse_genomes_project 13 3140048 3142832 - Pfkp protein_coding retained_intron MGP_CASTEiJ_T0035866.1 MGP_CASTEiJ_G0019498.1 mouse_genomes_project 13 3147197 3197082 - Pfkp protein_coding retained_intron MGP_CASTEiJ_T0035867.1 MGP_CASTEiJ_G0019498.1 mouse_genomes_project 13 3152518 3157104 - Pfkp protein_coding retained_intron MGP_CASTEiJ_T0035868.1 MGP_CASTEiJ_G0019498.1 mouse_genomes_project 13 3156693 3197082 - Pfkp protein_coding retained_intron MGP_CASTEiJ_T0035869.1 MGP_CASTEiJ_G0019498.1 mouse_genomes_project 13 3162667 3170389 - Pfkp protein_coding retained_intron MGP_CASTEiJ_T0035870.1 MGP_CASTEiJ_G0019498.1 mouse_genomes_project 13 3167397 3197082 - Pfkp protein_coding retained_intron MGP_CASTEiJ_T0035871.1 MGP_CASTEiJ_G0019498.1 mouse_genomes_project 13 3169226 3184992 - MGP_CASTEiJ_P0035871 Pfkp protein_coding protein_coding MGP_CASTEiJ_T0036089.1 MGP_CASTEiJ_G0019576.1 mouse_genomes_project 13 18825810 18826122 - MGP_CASTEiJ_P0036089 Hist1h4k protein_coding protein_coding MGP_CASTEiJ_T0000859.1 MGP_CASTEiJ_G0000798.1 mouse_genomes_project 13 101040779 101044083 + TEC TEC MGP_CASTEiJ_T0012586.1 MGP_CASTEiJ_G0010749.1 mouse_genomes_project 13 91839886 91840135 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036821.1 MGP_CASTEiJ_G0019850.1 mouse_genomes_project 13 54055564 54071772 + MGP_CASTEiJ_P0036821 Fgfr4 protein_coding protein_coding MGP_CASTEiJ_T0036822.1 MGP_CASTEiJ_G0019850.1 mouse_genomes_project 13 54058608 54059577 + Fgfr4 protein_coding processed_transcript MGP_CASTEiJ_T0036823.1 MGP_CASTEiJ_G0019850.1 mouse_genomes_project 13 54059038 54059826 + Fgfr4 protein_coding retained_intron MGP_CASTEiJ_T0037490.1 MGP_CASTEiJ_G0020083.1 mouse_genomes_project 13 92291841 92339332 - MGP_CASTEiJ_P0037490 Thbs4 protein_coding protein_coding MGP_CASTEiJ_T0037491.1 MGP_CASTEiJ_G0020083.1 mouse_genomes_project 13 92316108 92317893 - Thbs4 protein_coding retained_intron MGP_CASTEiJ_T0012524.1 MGP_CASTEiJ_G0010687.1 mouse_genomes_project 13 20328516 20328664 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037550.1 MGP_CASTEiJ_G0020102.1 mouse_genomes_project 13 95020806 95045688 - MGP_CASTEiJ_P0037550 Aggf1 protein_coding protein_coding MGP_CASTEiJ_T0037551.1 MGP_CASTEiJ_G0020102.1 mouse_genomes_project 13 95023665 95045670 - Aggf1 protein_coding processed_transcript MGP_CASTEiJ_T0037552.1 MGP_CASTEiJ_G0020102.1 mouse_genomes_project 13 95034360 95045507 - MGP_CASTEiJ_P0037552 Aggf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036388.1 MGP_CASTEiJ_G0019722.1 mouse_genomes_project 13 33204475 33441034 + MGP_CASTEiJ_P0036388 Cdyl protein_coding protein_coding MGP_CASTEiJ_T0036389.1 MGP_CASTEiJ_G0019722.1 mouse_genomes_project 13 33302642 33441028 + MGP_CASTEiJ_P0036389 Cdyl protein_coding protein_coding MGP_CASTEiJ_T0035996.1 MGP_CASTEiJ_G0019532.1 mouse_genomes_project 13 14568251 14571950 + MGP_CASTEiJ_P0035996 Mplkip protein_coding protein_coding MGP_CASTEiJ_T0102046.1 MGP_CASTEiJ_G0038771.1 mouse_genomes_project 13 19933330 19933765 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102071.1 MGP_CASTEiJ_G0038796.1 mouse_genomes_project 13 106601330 106601886 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0037316.1 MGP_CASTEiJ_G0020045.1 mouse_genomes_project 13 76126319 76593957 + MGP_CASTEiJ_P0037316 2210408I21Rik protein_coding protein_coding MGP_CASTEiJ_T0037317.1 MGP_CASTEiJ_G0020045.1 mouse_genomes_project 13 76246212 76347169 + MGP_CASTEiJ_P0037317 2210408I21Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0009679.1 MGP_CASTEiJ_G0007867.1 mouse_genomes_project 13 49313629 49313732 - Gm23952 miRNA miRNA MGP_CASTEiJ_T0036100.1 MGP_CASTEiJ_G0019582.1 mouse_genomes_project 13 19073190 19081861 + MGP_CASTEiJ_P0036100 Pom121l2 protein_coding protein_coding MGP_CASTEiJ_T0036101.1 MGP_CASTEiJ_G0019582.1 mouse_genomes_project 13 19073516 19076476 + MGP_CASTEiJ_P0036101 Pom121l2 protein_coding protein_coding MGP_CASTEiJ_T0016617.1 MGP_CASTEiJ_G0014570.1 mouse_genomes_project 13 58970536 58972458 + Etohd2 processed_transcript processed_transcript MGP_CASTEiJ_T0016618.1 MGP_CASTEiJ_G0014570.1 mouse_genomes_project 13 58970537 58974203 + Etohd2 processed_transcript processed_transcript MGP_CASTEiJ_T0036131.1 MGP_CASTEiJ_G0019609.1 mouse_genomes_project 13 20106676 20110467 - MGP_CASTEiJ_P0036131 Vmn1r217 protein_coding protein_coding MGP_CASTEiJ_T0036540.1 MGP_CASTEiJ_G0019776.1 mouse_genomes_project 13 44608090 44622190 + MGP_CASTEiJ_P0036540 Rbm24 protein_coding protein_coding MGP_CASTEiJ_T0006457.1 MGP_CASTEiJ_G0005359.1 mouse_genomes_project 13 99546480 99552654 + Gm26559 lincRNA lincRNA MGP_CASTEiJ_T0037887.1 MGP_CASTEiJ_G0020205.1 mouse_genomes_project 13 113805858 113809467 - MGP_CASTEiJ_P0037887 Gpx8 protein_coding protein_coding MGP_CASTEiJ_T0036066.1 MGP_CASTEiJ_G0019560.1 mouse_genomes_project 13 18539357 18540744 - MGP_CASTEiJ_P0036066 Gm10065 protein_coding protein_coding MGP_CASTEiJ_T0036864.1 MGP_CASTEiJ_G0019865.1 mouse_genomes_project 13 54465024 54471873 - MGP_CASTEiJ_P0036864 Ddx41 protein_coding protein_coding MGP_CASTEiJ_T0037429.1 MGP_CASTEiJ_G0020064.1 mouse_genomes_project 13 89508251 89532090 + MGP_CASTEiJ_P0037429 Tmem167 protein_coding protein_coding MGP_CASTEiJ_T0037430.1 MGP_CASTEiJ_G0020064.1 mouse_genomes_project 13 89508863 89563737 + MGP_CASTEiJ_P0037430 Tmem167 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037431.1 MGP_CASTEiJ_G0020064.1 mouse_genomes_project 13 89508891 89524502 + MGP_CASTEiJ_P0037431 Tmem167 protein_coding protein_coding MGP_CASTEiJ_T0012511.1 MGP_CASTEiJ_G0010674.1 mouse_genomes_project 13 14881050 14884978 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100572.1 MGP_CASTEiJ_G0037485.1 mouse_genomes_project 13 50261561 50261697 + Gm22806 snoRNA snoRNA MGP_CASTEiJ_T0009676.1 MGP_CASTEiJ_G0007864.1 mouse_genomes_project 13 48457611 48457714 + Gm24017 miRNA miRNA MGP_CASTEiJ_T0000834.1 MGP_CASTEiJ_G0000774.1 mouse_genomes_project 13 14903061 14908591 + TEC TEC MGP_CASTEiJ_T0037327.1 MGP_CASTEiJ_G0020049.1 mouse_genomes_project 13 79937835 79944103 + Arrdc3 protein_coding retained_intron MGP_CASTEiJ_T0037328.1 MGP_CASTEiJ_G0020049.1 mouse_genomes_project 13 79937861 79950494 + MGP_CASTEiJ_P0037328 Arrdc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037329.1 MGP_CASTEiJ_G0020049.1 mouse_genomes_project 13 79938102 79950494 + MGP_CASTEiJ_P0037329 Arrdc3 protein_coding protein_coding MGP_CASTEiJ_T0037330.1 MGP_CASTEiJ_G0020049.1 mouse_genomes_project 13 79944566 79945715 + Arrdc3 protein_coding retained_intron MGP_CASTEiJ_T0037331.1 MGP_CASTEiJ_G0020049.1 mouse_genomes_project 13 79944980 79946105 + Arrdc3 protein_coding retained_intron MGP_CASTEiJ_T0006382.1 MGP_CASTEiJ_G0005309.1 mouse_genomes_project 13 36736298 36741995 + 5033403F01Rik lincRNA lincRNA MGP_CASTEiJ_T0037736.1 MGP_CASTEiJ_G0020159.1 mouse_genomes_project 13 103992522 104018248 - MGP_CASTEiJ_P0037736 Srek1 protein_coding protein_coding MGP_CASTEiJ_T0012553.1 MGP_CASTEiJ_G0010716.1 mouse_genomes_project 13 38873424 38877335 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035822.1 MGP_CASTEiJ_G0019478.1 mouse_genomes_project 13 130224 152020 + MGP_CASTEiJ_P0035822 Asb13 protein_coding protein_coding MGP_CASTEiJ_T0035823.1 MGP_CASTEiJ_G0019478.1 mouse_genomes_project 13 130281 130963 + Asb13 protein_coding processed_transcript MGP_CASTEiJ_T0035824.1 MGP_CASTEiJ_G0019478.1 mouse_genomes_project 13 130290 150731 + Asb13 protein_coding processed_transcript MGP_CASTEiJ_T0035825.1 MGP_CASTEiJ_G0019478.1 mouse_genomes_project 13 130291 140508 + Asb13 protein_coding retained_intron MGP_CASTEiJ_T0102053.1 MGP_CASTEiJ_G0038778.1 mouse_genomes_project 13 20195085 20195977 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0037893.1 MGP_CASTEiJ_G0020209.1 mouse_genomes_project 13 114076036 114148387 + MGP_CASTEiJ_P0037893 BC067074 protein_coding protein_coding MGP_CASTEiJ_T0037894.1 MGP_CASTEiJ_G0020209.1 mouse_genomes_project 13 114117291 114146247 + MGP_CASTEiJ_P0037894 BC067074 protein_coding protein_coding MGP_CASTEiJ_T0037895.1 MGP_CASTEiJ_G0020209.1 mouse_genomes_project 13 114126771 114154103 + MGP_CASTEiJ_P0037895 BC067074 protein_coding protein_coding MGP_CASTEiJ_T0036480.1 MGP_CASTEiJ_G0019759.1 mouse_genomes_project 13 40632076 41121768 + MGP_CASTEiJ_P0036480 Phactr1 protein_coding protein_coding MGP_CASTEiJ_T0036481.1 MGP_CASTEiJ_G0019759.1 mouse_genomes_project 13 40632252 40924898 + Phactr1 protein_coding retained_intron MGP_CASTEiJ_T0036482.1 MGP_CASTEiJ_G0019759.1 mouse_genomes_project 13 40632966 41118453 + MGP_CASTEiJ_P0036482 Phactr1 protein_coding protein_coding MGP_CASTEiJ_T0036483.1 MGP_CASTEiJ_G0019759.1 mouse_genomes_project 13 40634149 41118397 + MGP_CASTEiJ_P0036483 Phactr1 protein_coding protein_coding MGP_CASTEiJ_T0036484.1 MGP_CASTEiJ_G0019759.1 mouse_genomes_project 13 40661013 41118640 + MGP_CASTEiJ_P0036484 Phactr1 protein_coding protein_coding MGP_CASTEiJ_T0036485.1 MGP_CASTEiJ_G0019759.1 mouse_genomes_project 13 40661051 41121770 + MGP_CASTEiJ_P0036485 Phactr1 protein_coding protein_coding MGP_CASTEiJ_T0036486.1 MGP_CASTEiJ_G0019759.1 mouse_genomes_project 13 40829278 41118513 + MGP_CASTEiJ_P0036486 Phactr1 protein_coding protein_coding MGP_CASTEiJ_T0036487.1 MGP_CASTEiJ_G0019759.1 mouse_genomes_project 13 40829879 40922643 + Phactr1 protein_coding processed_transcript MGP_CASTEiJ_T0036488.1 MGP_CASTEiJ_G0019759.1 mouse_genomes_project 13 41092200 41118617 + Phactr1 protein_coding processed_transcript MGP_CASTEiJ_T0036489.1 MGP_CASTEiJ_G0019759.1 mouse_genomes_project 13 41102881 41118650 + Phactr1 protein_coding processed_transcript MGP_CASTEiJ_T0036490.1 MGP_CASTEiJ_G0019759.1 mouse_genomes_project 13 41102896 41118564 + Phactr1 protein_coding processed_transcript MGP_CASTEiJ_T0036491.1 MGP_CASTEiJ_G0019759.1 mouse_genomes_project 13 41105817 41118457 + Phactr1 protein_coding processed_transcript MGP_CASTEiJ_T0036492.1 MGP_CASTEiJ_G0019759.1 mouse_genomes_project 13 41105817 41118457 + Phactr1 protein_coding processed_transcript MGP_CASTEiJ_T0036493.1 MGP_CASTEiJ_G0019759.1 mouse_genomes_project 13 41105849 41118457 + Phactr1 protein_coding processed_transcript MGP_CASTEiJ_T0036494.1 MGP_CASTEiJ_G0019759.1 mouse_genomes_project 13 41114631 41115875 + Phactr1 protein_coding processed_transcript MGP_CASTEiJ_T0036495.1 MGP_CASTEiJ_G0019759.1 mouse_genomes_project 13 41118617 41121756 + Phactr1 protein_coding processed_transcript MGP_CASTEiJ_T0037458.1 MGP_CASTEiJ_G0020073.1 mouse_genomes_project 13 91388985 91416504 - MGP_CASTEiJ_P0037458 Ckmt2 protein_coding protein_coding MGP_CASTEiJ_T0036571.1 MGP_CASTEiJ_G0019785.1 mouse_genomes_project 13 45348832 45488051 + MGP_CASTEiJ_P0036571 Rnf144b protein_coding protein_coding MGP_CASTEiJ_T0036572.1 MGP_CASTEiJ_G0019785.1 mouse_genomes_project 13 45431344 45488051 + MGP_CASTEiJ_P0036572 Rnf144b protein_coding protein_coding MGP_CASTEiJ_T0012529.1 MGP_CASTEiJ_G0010692.1 mouse_genomes_project 13 21408488 21408934 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036068.1 MGP_CASTEiJ_G0019562.1 mouse_genomes_project 13 18575888 18593815 - MGP_CASTEiJ_P0036068 Zkscan8 protein_coding protein_coding MGP_CASTEiJ_T0036069.1 MGP_CASTEiJ_G0019562.1 mouse_genomes_project 13 18584498 18593727 - MGP_CASTEiJ_P0036069 Zkscan8 protein_coding protein_coding MGP_CASTEiJ_T0036070.1 MGP_CASTEiJ_G0019562.1 mouse_genomes_project 13 18589129 18593768 - MGP_CASTEiJ_P0036070 Zkscan8 protein_coding protein_coding MGP_CASTEiJ_T0012512.1 MGP_CASTEiJ_G0010675.1 mouse_genomes_project 13 16387828 16388277 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003372.1 MGP_CASTEiJ_G0003089.1 mouse_genomes_project 13 91228818 91263126 - 4833422C13Rik antisense antisense MGP_CASTEiJ_T0003373.1 MGP_CASTEiJ_G0003089.1 mouse_genomes_project 13 91235030 91263030 - 4833422C13Rik antisense antisense MGP_CASTEiJ_T0003374.1 MGP_CASTEiJ_G0003089.1 mouse_genomes_project 13 91240396 91263082 - 4833422C13Rik antisense antisense MGP_CASTEiJ_T0035841.1 MGP_CASTEiJ_G0019488.1 mouse_genomes_project 13 733352 756197 + MGP_CASTEiJ_P0035841 Akr1c19 protein_coding protein_coding MGP_CASTEiJ_T0035842.1 MGP_CASTEiJ_G0019488.1 mouse_genomes_project 13 739674 756196 + MGP_CASTEiJ_P0035842 Akr1c19 protein_coding protein_coding MGP_CASTEiJ_T0035843.1 MGP_CASTEiJ_G0019488.1 mouse_genomes_project 13 753184 756517 + Akr1c19 protein_coding processed_transcript MGP_CASTEiJ_T0035830.1 MGP_CASTEiJ_G0019482.1 mouse_genomes_project 13 374870 416399 - MGP_CASTEiJ_P0035830 Net1 protein_coding protein_coding MGP_CASTEiJ_T0035831.1 MGP_CASTEiJ_G0019482.1 mouse_genomes_project 13 374870 390325 - MGP_CASTEiJ_P0035831 Net1 protein_coding protein_coding MGP_CASTEiJ_T0035832.1 MGP_CASTEiJ_G0019482.1 mouse_genomes_project 13 374872 390132 - MGP_CASTEiJ_P0035832 Net1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036124.1 MGP_CASTEiJ_G0019602.1 mouse_genomes_project 13 19792294 19793293 - MGP_CASTEiJ_P0036124 Vmn1r208 protein_coding protein_coding MGP_CASTEiJ_T0003379.1 MGP_CASTEiJ_G0003093.1 mouse_genomes_project 13 93274911 93287943 - AW495222 antisense antisense MGP_CASTEiJ_T0003380.1 MGP_CASTEiJ_G0003093.1 mouse_genomes_project 13 93284180 93287902 - AW495222 antisense antisense MGP_CASTEiJ_T0012531.1 MGP_CASTEiJ_G0010694.1 mouse_genomes_project 13 22246803 22247121 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036321.1 MGP_CASTEiJ_G0019700.1 mouse_genomes_project 13 30492393 30506242 + MGP_CASTEiJ_P0036321 Serpinb6b protein_coding protein_coding MGP_CASTEiJ_T0036322.1 MGP_CASTEiJ_G0019700.1 mouse_genomes_project 13 30492628 30506237 + MGP_CASTEiJ_P0036322 Serpinb6b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036323.1 MGP_CASTEiJ_G0019700.1 mouse_genomes_project 13 30492687 30506237 + Serpinb6b protein_coding processed_transcript MGP_CASTEiJ_T0036126.1 MGP_CASTEiJ_G0019604.1 mouse_genomes_project 13 19871404 19872394 - MGP_CASTEiJ_P0036126 Vmn1r211 protein_coding protein_coding MGP_CASTEiJ_T0003335.1 MGP_CASTEiJ_G0003069.1 mouse_genomes_project 13 39705262 39706278 + 1700061E18Rik antisense antisense MGP_CASTEiJ_T0036584.1 MGP_CASTEiJ_G0019791.1 mouse_genomes_project 13 47169788 47249045 - MGP_CASTEiJ_P0036584 Phf2 protein_coding protein_coding MGP_CASTEiJ_T0037880.1 MGP_CASTEiJ_G0020202.1 mouse_genomes_project 13 113746815 113749817 + MGP_CASTEiJ_P0037880 Ccno protein_coding protein_coding MGP_CASTEiJ_T0036961.1 MGP_CASTEiJ_G0019900.1 mouse_genomes_project 13 58582190 58584599 + protein_coding retained_intron MGP_CASTEiJ_T0036248.1 MGP_CASTEiJ_G0019662.1 mouse_genomes_project 13 24374832 24385806 + MGP_CASTEiJ_P0036248 Prl3c1 protein_coding protein_coding MGP_CASTEiJ_T0036249.1 MGP_CASTEiJ_G0019662.1 mouse_genomes_project 13 24380958 24385806 + MGP_CASTEiJ_P0036249 Prl3c1 protein_coding protein_coding MGP_CASTEiJ_T0036250.1 MGP_CASTEiJ_G0019662.1 mouse_genomes_project 13 24381408 24385669 + MGP_CASTEiJ_P0036250 Prl3c1 protein_coding protein_coding MGP_CASTEiJ_T0037016.1 MGP_CASTEiJ_G0019916.1 mouse_genomes_project 13 60155629 60196487 - MGP_CASTEiJ_P0037016 Ctla2b protein_coding protein_coding MGP_CASTEiJ_T0037017.1 MGP_CASTEiJ_G0019916.1 mouse_genomes_project 13 60155629 60196487 - MGP_CASTEiJ_P0037017 Ctla2b protein_coding protein_coding MGP_CASTEiJ_T0037488.1 MGP_CASTEiJ_G0020081.1 mouse_genomes_project 13 92121105 92122707 - MGP_CASTEiJ_P0037488 Spz1 protein_coding protein_coding MGP_CASTEiJ_T0036085.1 MGP_CASTEiJ_G0019573.1 mouse_genomes_project 13 18796930 18909794 + MGP_CASTEiJ_P0036085 Hist1h2bq protein_coding protein_coding MGP_CASTEiJ_T0036086.1 MGP_CASTEiJ_G0019573.1 mouse_genomes_project 13 18796930 18909994 + MGP_CASTEiJ_P0036086 Hist1h2bq protein_coding protein_coding MGP_CASTEiJ_T0035853.1 MGP_CASTEiJ_G0019494.1 mouse_genomes_project 13 1302563 1368290 + MGP_CASTEiJ_P0035853 protein_coding protein_coding MGP_CASTEiJ_T0006343.1 MGP_CASTEiJ_G0005281.1 mouse_genomes_project 13 20301436 20342984 - 4930557F10Rik lincRNA lincRNA MGP_CASTEiJ_T0036899.1 MGP_CASTEiJ_G0019882.1 mouse_genomes_project 13 55477418 55480378 - MGP_CASTEiJ_P0036899 Il9 protein_coding protein_coding MGP_CASTEiJ_T0012576.1 MGP_CASTEiJ_G0010739.1 mouse_genomes_project 13 75923604 75924273 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000844.1 MGP_CASTEiJ_G0000783.1 mouse_genomes_project 13 62809421 62810377 - TEC TEC MGP_CASTEiJ_T0006385.1 MGP_CASTEiJ_G0005312.1 mouse_genomes_project 13 42153944 42161591 + lincRNA lincRNA MGP_CASTEiJ_T0006386.1 MGP_CASTEiJ_G0005312.1 mouse_genomes_project 13 42154071 42161591 + lincRNA lincRNA MGP_CASTEiJ_T0037203.1 MGP_CASTEiJ_G0020002.1 mouse_genomes_project 13 69428194 69562110 - MGP_CASTEiJ_P0037203 Adamts16 protein_coding protein_coding MGP_CASTEiJ_T0037204.1 MGP_CASTEiJ_G0020002.1 mouse_genomes_project 13 69428202 69562095 - MGP_CASTEiJ_P0037204 Adamts16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037205.1 MGP_CASTEiJ_G0020002.1 mouse_genomes_project 13 69475842 69562110 - MGP_CASTEiJ_P0037205 Adamts16 protein_coding protein_coding MGP_CASTEiJ_T0037206.1 MGP_CASTEiJ_G0020002.1 mouse_genomes_project 13 69554171 69562110 - Adamts16 protein_coding retained_intron MGP_CASTEiJ_T0036998.1 MGP_CASTEiJ_G0019904.1 mouse_genomes_project 13 58832103 58875336 - MGP_CASTEiJ_P0036998 Golm1 protein_coding protein_coding MGP_CASTEiJ_T0036999.1 MGP_CASTEiJ_G0019904.1 mouse_genomes_project 13 58832103 58875336 - MGP_CASTEiJ_P0036999 Golm1 protein_coding protein_coding MGP_CASTEiJ_T0037134.1 MGP_CASTEiJ_G0019965.1 mouse_genomes_project 13 65860818 65870736 + MGP_CASTEiJ_P0037134 protein_coding protein_coding MGP_CASTEiJ_T0037135.1 MGP_CASTEiJ_G0019965.1 mouse_genomes_project 13 65860835 65870754 + MGP_CASTEiJ_P0037135 protein_coding protein_coding MGP_CASTEiJ_T0036238.1 MGP_CASTEiJ_G0019656.1 mouse_genomes_project 13 22367302 22385479 - MGP_CASTEiJ_P0036238 Nrsn1 protein_coding protein_coding MGP_CASTEiJ_T0036239.1 MGP_CASTEiJ_G0019656.1 mouse_genomes_project 13 22367454 22378005 - MGP_CASTEiJ_P0036239 Nrsn1 protein_coding protein_coding MGP_CASTEiJ_T0036240.1 MGP_CASTEiJ_G0019656.1 mouse_genomes_project 13 22368677 22378002 - Nrsn1 protein_coding processed_transcript MGP_CASTEiJ_T0036241.1 MGP_CASTEiJ_G0019656.1 mouse_genomes_project 13 22385431 22385897 - Nrsn1 protein_coding processed_transcript MGP_CASTEiJ_T0036472.1 MGP_CASTEiJ_G0019755.1 mouse_genomes_project 13 39552477 39553295 + MGP_CASTEiJ_P0036472 protein_coding protein_coding MGP_CASTEiJ_T0036895.1 MGP_CASTEiJ_G0019878.1 mouse_genomes_project 13 55231328 55232995 - MGP_CASTEiJ_P0036895 Neurog1 protein_coding protein_coding MGP_CASTEiJ_T0012544.1 MGP_CASTEiJ_G0010707.1 mouse_genomes_project 13 27796391 27796709 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036541.1 MGP_CASTEiJ_G0019777.1 mouse_genomes_project 13 44722470 44851328 + MGP_CASTEiJ_P0036541 Cap2 protein_coding protein_coding MGP_CASTEiJ_T0036542.1 MGP_CASTEiJ_G0019777.1 mouse_genomes_project 13 44840159 44846595 + Cap2 protein_coding processed_transcript MGP_CASTEiJ_T0009681.1 MGP_CASTEiJ_G0007869.1 mouse_genomes_project 13 54381224 54381290 + Mir6943 miRNA miRNA MGP_CASTEiJ_T0011025.1 MGP_CASTEiJ_G0009213.1 mouse_genomes_project 13 55719475 55719602 + Gm27301 misc_RNA misc_RNA MGP_CASTEiJ_T0016599.1 MGP_CASTEiJ_G0014559.1 mouse_genomes_project 13 18501553 18508109 + 4930470G03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0037084.1 MGP_CASTEiJ_G0019940.1 mouse_genomes_project 13 63468812 63554949 - MGP_CASTEiJ_P0037084 Cdc14b protein_coding protein_coding MGP_CASTEiJ_T0037085.1 MGP_CASTEiJ_G0019940.1 mouse_genomes_project 13 63468812 63529185 - MGP_CASTEiJ_P0037085 Cdc14b protein_coding protein_coding MGP_CASTEiJ_T0037086.1 MGP_CASTEiJ_G0019940.1 mouse_genomes_project 13 63472524 63554855 - MGP_CASTEiJ_P0037086 Cdc14b protein_coding protein_coding MGP_CASTEiJ_T0012539.1 MGP_CASTEiJ_G0010702.1 mouse_genomes_project 13 25823656 25824144 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036359.1 MGP_CASTEiJ_G0019712.1 mouse_genomes_project 13 31561644 31566343 - MGP_CASTEiJ_P0036359 Tubb2a protein_coding protein_coding MGP_CASTEiJ_T0037679.1 MGP_CASTEiJ_G0020146.1 mouse_genomes_project 13 100620554 100686208 - MGP_CASTEiJ_P0037679 Ocln protein_coding protein_coding MGP_CASTEiJ_T0037680.1 MGP_CASTEiJ_G0020146.1 mouse_genomes_project 13 100640494 100686189 - MGP_CASTEiJ_P0037680 Ocln protein_coding protein_coding MGP_CASTEiJ_T0000846.1 MGP_CASTEiJ_G0000785.1 mouse_genomes_project 13 66208569 66210400 + TEC TEC MGP_CASTEiJ_T0003354.1 MGP_CASTEiJ_G0003081.1 mouse_genomes_project 13 65708767 66602047 + antisense antisense MGP_CASTEiJ_T0003355.1 MGP_CASTEiJ_G0003081.1 mouse_genomes_project 13 66566977 66609916 + antisense antisense MGP_CASTEiJ_T0003356.1 MGP_CASTEiJ_G0003081.1 mouse_genomes_project 13 66592333 66611040 + antisense antisense MGP_CASTEiJ_T0037149.1 MGP_CASTEiJ_G0019974.1 mouse_genomes_project 13 66064687 66099781 - MGP_CASTEiJ_P0037149 Gm28041 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037025.1 MGP_CASTEiJ_G0019923.1 mouse_genomes_project 13 60480209 60488553 - MGP_CASTEiJ_P0037025 Cts6 protein_coding protein_coding MGP_CASTEiJ_T0011030.1 MGP_CASTEiJ_G0009218.1 mouse_genomes_project 13 102456650 102456934 + Gm25808 misc_RNA misc_RNA MGP_CASTEiJ_T0006453.1 MGP_CASTEiJ_G0005355.1 mouse_genomes_project 13 98420982 98421844 - Gm29501 lincRNA lincRNA MGP_CASTEiJ_T0006476.1 MGP_CASTEiJ_G0005373.1 mouse_genomes_project 13 120813497 120815033 + 1700074H08Rik lincRNA lincRNA MGP_CASTEiJ_T0006441.1 MGP_CASTEiJ_G0005347.1 mouse_genomes_project 13 90864587 90887803 - A830009L08Rik lincRNA lincRNA MGP_CASTEiJ_T0036264.1 MGP_CASTEiJ_G0019670.1 mouse_genomes_project 13 24760364 24768286 - MGP_CASTEiJ_P0036264 Prl8a9 protein_coding protein_coding MGP_CASTEiJ_T0037320.1 MGP_CASTEiJ_G0020047.1 mouse_genomes_project 13 76974762 76976193 + MGP_CASTEiJ_P0037320 Pou5f2 protein_coding protein_coding MGP_CASTEiJ_T0102041.1 MGP_CASTEiJ_G0038766.1 mouse_genomes_project 13 19722946 19723491 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000843.1 MGP_CASTEiJ_G0000782.1 mouse_genomes_project 13 50652690 50654842 - TEC TEC MGP_CASTEiJ_T0036953.1 MGP_CASTEiJ_G0019897.1 mouse_genomes_project 13 57492381 57503729 + MGP_CASTEiJ_P0036953 Rmi1 protein_coding protein_coding MGP_CASTEiJ_T0102031.1 MGP_CASTEiJ_G0038756.1 mouse_genomes_project 13 19272501 19273266 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000848.1 MGP_CASTEiJ_G0000787.1 mouse_genomes_project 13 69801818 69805110 - TEC TEC MGP_CASTEiJ_T0037647.1 MGP_CASTEiJ_G0020140.1 mouse_genomes_project 13 100081627 100170895 - MGP_CASTEiJ_P0037647 Bdp1 protein_coding protein_coding MGP_CASTEiJ_T0037648.1 MGP_CASTEiJ_G0020140.1 mouse_genomes_project 13 100081629 100120807 - MGP_CASTEiJ_P0037648 Bdp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037649.1 MGP_CASTEiJ_G0020140.1 mouse_genomes_project 13 100087207 100170663 - MGP_CASTEiJ_P0037649 Bdp1 protein_coding protein_coding MGP_CASTEiJ_T0037650.1 MGP_CASTEiJ_G0020140.1 mouse_genomes_project 13 100107298 100110902 - Bdp1 protein_coding retained_intron MGP_CASTEiJ_T0037651.1 MGP_CASTEiJ_G0020140.1 mouse_genomes_project 13 100127000 100132037 - Bdp1 protein_coding retained_intron MGP_CASTEiJ_T0037652.1 MGP_CASTEiJ_G0020140.1 mouse_genomes_project 13 100145098 100165571 - MGP_CASTEiJ_P0037652 Bdp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037653.1 MGP_CASTEiJ_G0020140.1 mouse_genomes_project 13 100164536 100170702 - MGP_CASTEiJ_P0037653 Bdp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036682.1 MGP_CASTEiJ_G0019820.1 mouse_genomes_project 13 51265552 51340733 + MGP_CASTEiJ_P0036682 Syk protein_coding protein_coding MGP_CASTEiJ_T0036683.1 MGP_CASTEiJ_G0019820.1 mouse_genomes_project 13 51265813 51335511 + MGP_CASTEiJ_P0036683 Syk protein_coding protein_coding MGP_CASTEiJ_T0036684.1 MGP_CASTEiJ_G0019820.1 mouse_genomes_project 13 51265879 51299285 + Syk protein_coding retained_intron MGP_CASTEiJ_T0036685.1 MGP_CASTEiJ_G0019820.1 mouse_genomes_project 13 51280601 51340723 + MGP_CASTEiJ_P0036685 Syk protein_coding protein_coding MGP_CASTEiJ_T0036686.1 MGP_CASTEiJ_G0019820.1 mouse_genomes_project 13 51280707 51313809 + Syk protein_coding retained_intron MGP_CASTEiJ_T0036687.1 MGP_CASTEiJ_G0019820.1 mouse_genomes_project 13 51296343 51374473 + MGP_CASTEiJ_P0036687 Syk protein_coding unknown_likely_coding MGP_CASTEiJ_T0012548.1 MGP_CASTEiJ_G0010711.1 mouse_genomes_project 13 29350857 29351406 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098500.1 MGP_CASTEiJ_G0035431.1 mouse_genomes_project 13 114178773 114178874 + Gm22385 rRNA rRNA MGP_CASTEiJ_T0003364.1 MGP_CASTEiJ_G0003087.1 mouse_genomes_project 13 77157399 77204254 + antisense antisense MGP_CASTEiJ_T0003365.1 MGP_CASTEiJ_G0003087.1 mouse_genomes_project 13 77163490 77190178 + antisense antisense MGP_CASTEiJ_T0003366.1 MGP_CASTEiJ_G0003087.1 mouse_genomes_project 13 77165022 77203241 + antisense antisense MGP_CASTEiJ_T0003367.1 MGP_CASTEiJ_G0003087.1 mouse_genomes_project 13 77165416 77205085 + antisense antisense MGP_CASTEiJ_T0003368.1 MGP_CASTEiJ_G0003087.1 mouse_genomes_project 13 77169593 77189588 + antisense antisense MGP_CASTEiJ_T0003369.1 MGP_CASTEiJ_G0003087.1 mouse_genomes_project 13 77169827 77242692 + antisense antisense MGP_CASTEiJ_T0037900.1 MGP_CASTEiJ_G0020213.1 mouse_genomes_project 13 115117052 115227731 - MGP_CASTEiJ_P0037900 Ndufs4 protein_coding protein_coding MGP_CASTEiJ_T0006351.1 MGP_CASTEiJ_G0005288.1 mouse_genomes_project 13 23448453 23480738 - 1700092E19Rik lincRNA lincRNA MGP_CASTEiJ_T0006352.1 MGP_CASTEiJ_G0005288.1 mouse_genomes_project 13 23473797 23480679 - 1700092E19Rik lincRNA lincRNA MGP_CASTEiJ_T0000850.1 MGP_CASTEiJ_G0000789.1 mouse_genomes_project 13 82852340 82856169 - TEC TEC MGP_CASTEiJ_T0036913.1 MGP_CASTEiJ_G0019887.1 mouse_genomes_project 13 55784500 55908487 - MGP_CASTEiJ_P0036913 Trpc7 protein_coding protein_coding MGP_CASTEiJ_T0036914.1 MGP_CASTEiJ_G0019887.1 mouse_genomes_project 13 55784500 55908448 - MGP_CASTEiJ_P0036914 Trpc7 protein_coding protein_coding MGP_CASTEiJ_T0036915.1 MGP_CASTEiJ_G0019887.1 mouse_genomes_project 13 55784655 55908500 - MGP_CASTEiJ_P0036915 Trpc7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036916.1 MGP_CASTEiJ_G0019887.1 mouse_genomes_project 13 55785706 55908205 - MGP_CASTEiJ_P0036916 Trpc7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036917.1 MGP_CASTEiJ_G0019887.1 mouse_genomes_project 13 55785706 55908205 - MGP_CASTEiJ_P0036917 Trpc7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036918.1 MGP_CASTEiJ_G0019887.1 mouse_genomes_project 13 55785706 55908205 - MGP_CASTEiJ_P0036918 Trpc7 protein_coding protein_coding MGP_CASTEiJ_T0036919.1 MGP_CASTEiJ_G0019887.1 mouse_genomes_project 13 55785706 55908205 - MGP_CASTEiJ_P0036919 Trpc7 protein_coding protein_coding MGP_CASTEiJ_T0036920.1 MGP_CASTEiJ_G0019887.1 mouse_genomes_project 13 55785706 55908205 - MGP_CASTEiJ_P0036920 Trpc7 protein_coding protein_coding MGP_CASTEiJ_T0037207.1 MGP_CASTEiJ_G0020003.1 mouse_genomes_project 13 69610143 69611690 + MGP_CASTEiJ_P0037207 8030423J24Rik protein_coding protein_coding MGP_CASTEiJ_T0037638.1 MGP_CASTEiJ_G0020133.1 mouse_genomes_project 13 98989760 98990241 - MGP_CASTEiJ_P0037638 1700024P04Rik protein_coding protein_coding MGP_CASTEiJ_T0012550.1 MGP_CASTEiJ_G0010713.1 mouse_genomes_project 13 31085978 31086322 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003328.1 MGP_CASTEiJ_G0003064.1 mouse_genomes_project 13 22029785 22038289 + 4932702P03Rik antisense antisense MGP_CASTEiJ_T0003329.1 MGP_CASTEiJ_G0003064.1 mouse_genomes_project 13 22029788 22031426 + 4932702P03Rik antisense antisense MGP_CASTEiJ_T0037496.1 MGP_CASTEiJ_G0020087.1 mouse_genomes_project 13 92841479 92928204 + MGP_CASTEiJ_P0037496 Homer1 protein_coding protein_coding MGP_CASTEiJ_T0037497.1 MGP_CASTEiJ_G0020087.1 mouse_genomes_project 13 92841824 92907017 + MGP_CASTEiJ_P0037497 Homer1 protein_coding protein_coding MGP_CASTEiJ_T0037498.1 MGP_CASTEiJ_G0020087.1 mouse_genomes_project 13 92842217 92899352 + MGP_CASTEiJ_P0037498 Homer1 protein_coding protein_coding MGP_CASTEiJ_T0037499.1 MGP_CASTEiJ_G0020087.1 mouse_genomes_project 13 92842527 92951217 + MGP_CASTEiJ_P0037499 Homer1 protein_coding protein_coding MGP_CASTEiJ_T0037500.1 MGP_CASTEiJ_G0020087.1 mouse_genomes_project 13 92842831 92949805 + MGP_CASTEiJ_P0037500 Homer1 protein_coding protein_coding MGP_CASTEiJ_T0037501.1 MGP_CASTEiJ_G0020087.1 mouse_genomes_project 13 92842831 92949805 + MGP_CASTEiJ_P0037501 Homer1 protein_coding protein_coding MGP_CASTEiJ_T0037502.1 MGP_CASTEiJ_G0020087.1 mouse_genomes_project 13 92842887 92951326 + MGP_CASTEiJ_P0037502 Homer1 protein_coding protein_coding MGP_CASTEiJ_T0037503.1 MGP_CASTEiJ_G0020087.1 mouse_genomes_project 13 92842912 92906288 + MGP_CASTEiJ_P0037503 Homer1 protein_coding protein_coding MGP_CASTEiJ_T0037504.1 MGP_CASTEiJ_G0020087.1 mouse_genomes_project 13 92843006 92949841 + MGP_CASTEiJ_P0037504 Homer1 protein_coding protein_coding MGP_CASTEiJ_T0037505.1 MGP_CASTEiJ_G0020087.1 mouse_genomes_project 13 92843006 92949841 + MGP_CASTEiJ_P0037505 Homer1 protein_coding protein_coding MGP_CASTEiJ_T0037506.1 MGP_CASTEiJ_G0020087.1 mouse_genomes_project 13 92845824 92951665 + MGP_CASTEiJ_P0037506 Homer1 protein_coding protein_coding MGP_CASTEiJ_T0037507.1 MGP_CASTEiJ_G0020087.1 mouse_genomes_project 13 92924606 92952952 + MGP_CASTEiJ_P0037507 Homer1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037876.1 MGP_CASTEiJ_G0020199.1 mouse_genomes_project 13 113540336 113616641 + MGP_CASTEiJ_P0037876 Plpp1 protein_coding protein_coding MGP_CASTEiJ_T0037877.1 MGP_CASTEiJ_G0020199.1 mouse_genomes_project 13 113540365 113616395 + MGP_CASTEiJ_P0037877 Plpp1 protein_coding protein_coding MGP_CASTEiJ_T0036711.1 MGP_CASTEiJ_G0019829.1 mouse_genomes_project 13 53016107 53053502 + MGP_CASTEiJ_P0036711 Hrh2 protein_coding protein_coding MGP_CASTEiJ_T0012546.1 MGP_CASTEiJ_G0010709.1 mouse_genomes_project 13 28427991 28428532 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099350.1 MGP_CASTEiJ_G0036263.1 mouse_genomes_project 13 43109470 43109574 - Gm23104 snRNA snRNA MGP_CASTEiJ_T0006464.1 MGP_CASTEiJ_G0005365.1 mouse_genomes_project 13 112179819 112211545 - Gm15290 lincRNA lincRNA MGP_CASTEiJ_T0037077.1 MGP_CASTEiJ_G0019937.1 mouse_genomes_project 13 63366214 63401085 - MGP_CASTEiJ_P0037077 Slc35d2 protein_coding protein_coding MGP_CASTEiJ_T0102057.1 MGP_CASTEiJ_G0038782.1 mouse_genomes_project 13 24898260 24907740 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0037220.1 MGP_CASTEiJ_G0020008.1 mouse_genomes_project 13 72139419 72140585 + MGP_CASTEiJ_P0037220 Mrpl36 protein_coding protein_coding MGP_CASTEiJ_T0037292.1 MGP_CASTEiJ_G0020038.1 mouse_genomes_project 13 74941021 74971596 + MGP_CASTEiJ_P0037292 Spata9 protein_coding protein_coding MGP_CASTEiJ_T0012572.1 MGP_CASTEiJ_G0010735.1 mouse_genomes_project 13 72858889 72860231 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006439.1 MGP_CASTEiJ_G0005345.1 mouse_genomes_project 13 83027899 83075165 + 2810049E08Rik lincRNA lincRNA MGP_CASTEiJ_T0036688.1 MGP_CASTEiJ_G0019821.1 mouse_genomes_project 13 51540825 51630505 - MGP_CASTEiJ_P0036688 Auh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036689.1 MGP_CASTEiJ_G0019821.1 mouse_genomes_project 13 51540825 51640960 - MGP_CASTEiJ_P0036689 Auh protein_coding protein_coding MGP_CASTEiJ_T0036690.1 MGP_CASTEiJ_G0019821.1 mouse_genomes_project 13 51546620 51640754 - MGP_CASTEiJ_P0036690 Auh protein_coding protein_coding MGP_CASTEiJ_T0036691.1 MGP_CASTEiJ_G0019821.1 mouse_genomes_project 13 51593198 51640947 - Auh protein_coding retained_intron MGP_CASTEiJ_T0036692.1 MGP_CASTEiJ_G0019821.1 mouse_genomes_project 13 51602587 51640951 - MGP_CASTEiJ_P0036692 Auh protein_coding protein_coding MGP_CASTEiJ_T0036693.1 MGP_CASTEiJ_G0019821.1 mouse_genomes_project 13 51603360 51635133 - Auh protein_coding processed_transcript MGP_CASTEiJ_T0036694.1 MGP_CASTEiJ_G0019821.1 mouse_genomes_project 13 51613747 51640953 - MGP_CASTEiJ_P0036694 Auh protein_coding protein_coding MGP_CASTEiJ_T0036695.1 MGP_CASTEiJ_G0019821.1 mouse_genomes_project 13 51615596 51635112 - Auh protein_coding processed_transcript MGP_CASTEiJ_T0036696.1 MGP_CASTEiJ_G0019821.1 mouse_genomes_project 13 51615607 51630541 - Auh protein_coding processed_transcript MGP_CASTEiJ_T0036697.1 MGP_CASTEiJ_G0019821.1 mouse_genomes_project 13 51616909 51640980 - MGP_CASTEiJ_P0036697 Auh protein_coding protein_coding MGP_CASTEiJ_T0036698.1 MGP_CASTEiJ_G0019821.1 mouse_genomes_project 13 51621182 51635136 - Auh protein_coding processed_transcript MGP_CASTEiJ_T0036699.1 MGP_CASTEiJ_G0019821.1 mouse_genomes_project 13 51630054 51635128 - Auh protein_coding retained_intron MGP_CASTEiJ_T0036700.1 MGP_CASTEiJ_G0019821.1 mouse_genomes_project 13 51639784 51640951 - Auh protein_coding processed_transcript MGP_CASTEiJ_T0036446.1 MGP_CASTEiJ_G0019744.1 mouse_genomes_project 13 38698435 38814281 + MGP_CASTEiJ_P0036446 Gcnt2 protein_coding protein_coding MGP_CASTEiJ_T0036447.1 MGP_CASTEiJ_G0019744.1 mouse_genomes_project 13 38730779 38814281 + MGP_CASTEiJ_P0036447 Gcnt2 protein_coding protein_coding MGP_CASTEiJ_T0036448.1 MGP_CASTEiJ_G0019744.1 mouse_genomes_project 13 38765512 38814281 + MGP_CASTEiJ_P0036448 Gcnt2 protein_coding protein_coding MGP_CASTEiJ_T0012532.1 MGP_CASTEiJ_G0010695.1 mouse_genomes_project 13 22587189 22587897 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036045.1 MGP_CASTEiJ_G0019552.1 mouse_genomes_project 13 18333337 18339585 - MGP_CASTEiJ_P0036045 Gpx5 protein_coding protein_coding MGP_CASTEiJ_T0036046.1 MGP_CASTEiJ_G0019552.1 mouse_genomes_project 13 18333337 18339540 - MGP_CASTEiJ_P0036046 Gpx5 protein_coding protein_coding MGP_CASTEiJ_T0036587.1 MGP_CASTEiJ_G0019793.1 mouse_genomes_project 13 47423100 47537305 - MGP_CASTEiJ_P0036587 Wnk2 protein_coding protein_coding MGP_CASTEiJ_T0036588.1 MGP_CASTEiJ_G0019793.1 mouse_genomes_project 13 47423100 47537305 - MGP_CASTEiJ_P0036588 Wnk2 protein_coding protein_coding MGP_CASTEiJ_T0036589.1 MGP_CASTEiJ_G0019793.1 mouse_genomes_project 13 47423100 47537305 - MGP_CASTEiJ_P0036589 Wnk2 protein_coding protein_coding MGP_CASTEiJ_T0036590.1 MGP_CASTEiJ_G0019793.1 mouse_genomes_project 13 47423100 47537303 - MGP_CASTEiJ_P0036590 Wnk2 protein_coding protein_coding MGP_CASTEiJ_T0036591.1 MGP_CASTEiJ_G0019793.1 mouse_genomes_project 13 47423106 47536522 - MGP_CASTEiJ_P0036591 Wnk2 protein_coding protein_coding MGP_CASTEiJ_T0036592.1 MGP_CASTEiJ_G0019793.1 mouse_genomes_project 13 47423107 47536522 - MGP_CASTEiJ_P0036592 Wnk2 protein_coding protein_coding MGP_CASTEiJ_T0036593.1 MGP_CASTEiJ_G0019793.1 mouse_genomes_project 13 47424409 47536543 - MGP_CASTEiJ_P0036593 Wnk2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036594.1 MGP_CASTEiJ_G0019793.1 mouse_genomes_project 13 47424410 47447267 - MGP_CASTEiJ_P0036594 Wnk2 protein_coding protein_coding MGP_CASTEiJ_T0036595.1 MGP_CASTEiJ_G0019793.1 mouse_genomes_project 13 47424421 47464439 - MGP_CASTEiJ_P0036595 Wnk2 protein_coding protein_coding MGP_CASTEiJ_T0036596.1 MGP_CASTEiJ_G0019793.1 mouse_genomes_project 13 47424781 47537305 - MGP_CASTEiJ_P0036596 Wnk2 protein_coding protein_coding MGP_CASTEiJ_T0036597.1 MGP_CASTEiJ_G0019793.1 mouse_genomes_project 13 47425668 47537305 - MGP_CASTEiJ_P0036597 Wnk2 protein_coding protein_coding MGP_CASTEiJ_T0036598.1 MGP_CASTEiJ_G0019793.1 mouse_genomes_project 13 47447712 47457409 - MGP_CASTEiJ_P0036598 Wnk2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006433.1 MGP_CASTEiJ_G0005343.1 mouse_genomes_project 13 82839108 82858944 + lincRNA lincRNA MGP_CASTEiJ_T0006434.1 MGP_CASTEiJ_G0005343.1 mouse_genomes_project 13 82839108 83005328 + lincRNA lincRNA MGP_CASTEiJ_T0006436.1 MGP_CASTEiJ_G0005343.1 mouse_genomes_project 13 82845784 82853301 + lincRNA lincRNA MGP_CASTEiJ_T0006437.1 MGP_CASTEiJ_G0005343.1 mouse_genomes_project 13 82850176 82853153 + lincRNA lincRNA MGP_CASTEiJ_T0006438.1 MGP_CASTEiJ_G0005343.1 mouse_genomes_project 13 82856496 83019063 + lincRNA lincRNA MGP_CASTEiJ_T0006446.1 MGP_CASTEiJ_G0005352.1 mouse_genomes_project 13 97273299 97343454 + Lncenc1 lincRNA lincRNA MGP_CASTEiJ_T0006447.1 MGP_CASTEiJ_G0005352.1 mouse_genomes_project 13 97328271 97343454 + Lncenc1 lincRNA lincRNA MGP_CASTEiJ_T0006448.1 MGP_CASTEiJ_G0005352.1 mouse_genomes_project 13 97328525 97336211 + Lncenc1 lincRNA lincRNA MGP_CASTEiJ_T0036288.1 MGP_CASTEiJ_G0019682.1 mouse_genomes_project 13 27527310 27643406 + MGP_CASTEiJ_P0036288 Mboat1 protein_coding protein_coding MGP_CASTEiJ_T0036289.1 MGP_CASTEiJ_G0019682.1 mouse_genomes_project 13 27527343 27628237 + MGP_CASTEiJ_P0036289 Mboat1 protein_coding protein_coding MGP_CASTEiJ_T0036290.1 MGP_CASTEiJ_G0019682.1 mouse_genomes_project 13 27527358 27554520 + Mboat1 protein_coding processed_transcript MGP_CASTEiJ_T0037847.1 MGP_CASTEiJ_G0020191.1 mouse_genomes_project 13 112257060 112257124 + MGP_CASTEiJ_P0037847 Gm10198 protein_coding protein_coding MGP_CASTEiJ_T0011031.1 MGP_CASTEiJ_G0009219.1 mouse_genomes_project 13 103661223 103661503 - Gm24441 misc_RNA misc_RNA MGP_CASTEiJ_T0036221.1 MGP_CASTEiJ_G0019649.1 mouse_genomes_project 13 21930465 21943544 - MGP_CASTEiJ_P0036221 Acot13 protein_coding protein_coding MGP_CASTEiJ_T0006412.1 MGP_CASTEiJ_G0005328.1 mouse_genomes_project 13 54795757 54796493 - Gm28760 lincRNA lincRNA MGP_CASTEiJ_T0006413.1 MGP_CASTEiJ_G0005328.1 mouse_genomes_project 13 54795757 54796490 - Gm28760 lincRNA lincRNA MGP_CASTEiJ_T0100574.1 MGP_CASTEiJ_G0037487.1 mouse_genomes_project 13 55946236 55946365 - Gm22777 snoRNA snoRNA MGP_CASTEiJ_T0009662.1 MGP_CASTEiJ_G0007850.1 mouse_genomes_project 13 18455167 18455228 - Mir6942 miRNA miRNA MGP_CASTEiJ_T0036201.1 MGP_CASTEiJ_G0019646.1 mouse_genomes_project 13 21676707 21852243 + MGP_CASTEiJ_P0036201 Fam65b protein_coding protein_coding MGP_CASTEiJ_T0036202.1 MGP_CASTEiJ_G0019646.1 mouse_genomes_project 13 21717184 21821222 + Fam65b protein_coding retained_intron MGP_CASTEiJ_T0036203.1 MGP_CASTEiJ_G0019646.1 mouse_genomes_project 13 21717184 21824997 + MGP_CASTEiJ_P0036203 Fam65b protein_coding protein_coding MGP_CASTEiJ_T0036204.1 MGP_CASTEiJ_G0019646.1 mouse_genomes_project 13 21717201 21824893 + MGP_CASTEiJ_P0036204 Fam65b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036205.1 MGP_CASTEiJ_G0019646.1 mouse_genomes_project 13 21742882 21852243 + MGP_CASTEiJ_P0036205 Fam65b protein_coding protein_coding MGP_CASTEiJ_T0036206.1 MGP_CASTEiJ_G0019646.1 mouse_genomes_project 13 21742884 21782638 + Fam65b protein_coding retained_intron MGP_CASTEiJ_T0036207.1 MGP_CASTEiJ_G0019646.1 mouse_genomes_project 13 21742918 21815009 + MGP_CASTEiJ_P0036207 Fam65b protein_coding protein_coding MGP_CASTEiJ_T0036208.1 MGP_CASTEiJ_G0019646.1 mouse_genomes_project 13 21742930 21824997 + MGP_CASTEiJ_P0036208 Fam65b protein_coding protein_coding MGP_CASTEiJ_T0036209.1 MGP_CASTEiJ_G0019646.1 mouse_genomes_project 13 21742947 21813234 + Fam65b protein_coding retained_intron MGP_CASTEiJ_T0036210.1 MGP_CASTEiJ_G0019646.1 mouse_genomes_project 13 21783573 21788645 + Fam65b protein_coding retained_intron MGP_CASTEiJ_T0036211.1 MGP_CASTEiJ_G0019646.1 mouse_genomes_project 13 21786087 21788641 + Fam65b protein_coding retained_intron MGP_CASTEiJ_T0036212.1 MGP_CASTEiJ_G0019646.1 mouse_genomes_project 13 21798485 21811510 + Fam65b protein_coding retained_intron MGP_CASTEiJ_T0036213.1 MGP_CASTEiJ_G0019646.1 mouse_genomes_project 13 21829078 21834711 + Fam65b protein_coding retained_intron MGP_CASTEiJ_T0006344.1 MGP_CASTEiJ_G0005282.1 mouse_genomes_project 13 20304682 20309415 + 4933404K08Rik lincRNA lincRNA MGP_CASTEiJ_T0036377.1 MGP_CASTEiJ_G0019720.1 mouse_genomes_project 13 32472164 32495542 - MGP_CASTEiJ_P0036377 Eci3 protein_coding protein_coding MGP_CASTEiJ_T0036378.1 MGP_CASTEiJ_G0019720.1 mouse_genomes_project 13 32472479 32495565 - MGP_CASTEiJ_P0036378 Eci3 protein_coding protein_coding MGP_CASTEiJ_T0037853.1 MGP_CASTEiJ_G0020193.1 mouse_genomes_project 13 112409372 112483229 - MGP_CASTEiJ_P0037853 Map3k1 protein_coding protein_coding MGP_CASTEiJ_T0037854.1 MGP_CASTEiJ_G0020193.1 mouse_genomes_project 13 112411537 112414124 - Map3k1 protein_coding retained_intron MGP_CASTEiJ_T0037855.1 MGP_CASTEiJ_G0020193.1 mouse_genomes_project 13 112416301 112417432 - Map3k1 protein_coding retained_intron MGP_CASTEiJ_T0037856.1 MGP_CASTEiJ_G0020193.1 mouse_genomes_project 13 112430392 112431335 - Map3k1 protein_coding processed_transcript MGP_CASTEiJ_T0037857.1 MGP_CASTEiJ_G0020193.1 mouse_genomes_project 13 112430765 112482659 - MGP_CASTEiJ_P0037857 Map3k1 protein_coding protein_coding MGP_CASTEiJ_T0006364.1 MGP_CASTEiJ_G0005297.1 mouse_genomes_project 13 28781165 28800458 - G630018N14Rik lincRNA lincRNA MGP_CASTEiJ_T0006365.1 MGP_CASTEiJ_G0005297.1 mouse_genomes_project 13 28793831 28799091 - G630018N14Rik lincRNA lincRNA MGP_CASTEiJ_T0037164.1 MGP_CASTEiJ_G0019982.1 mouse_genomes_project 13 66299131 66313820 - MGP_CASTEiJ_P0037164 Zfp748 protein_coding protein_coding MGP_CASTEiJ_T0037165.1 MGP_CASTEiJ_G0019982.1 mouse_genomes_project 13 66305609 66313820 - MGP_CASTEiJ_P0037165 Zfp748 protein_coding protein_coding MGP_CASTEiJ_T0035934.1 MGP_CASTEiJ_G0019509.1 mouse_genomes_project 13 8790427 8868870 - MGP_CASTEiJ_P0035934 Mtr protein_coding protein_coding MGP_CASTEiJ_T0102062.1 MGP_CASTEiJ_G0038787.1 mouse_genomes_project 13 31091007 31094267 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0006383.1 MGP_CASTEiJ_G0005310.1 mouse_genomes_project 13 39232676 39246098 + Gm26877 lincRNA lincRNA MGP_CASTEiJ_T0102034.1 MGP_CASTEiJ_G0038759.1 mouse_genomes_project 13 19501091 19501977 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0037078.1 MGP_CASTEiJ_G0019938.1 mouse_genomes_project 13 63407695 63428811 - MGP_CASTEiJ_P0037078 Zfp367 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037079.1 MGP_CASTEiJ_G0019938.1 mouse_genomes_project 13 63407695 63429003 - MGP_CASTEiJ_P0037079 Zfp367 protein_coding protein_coding MGP_CASTEiJ_T0037080.1 MGP_CASTEiJ_G0019938.1 mouse_genomes_project 13 63410073 63428230 - Zfp367 protein_coding processed_transcript MGP_CASTEiJ_T0037081.1 MGP_CASTEiJ_G0019938.1 mouse_genomes_project 13 63410200 63426010 - Zfp367 protein_coding processed_transcript MGP_CASTEiJ_T0037082.1 MGP_CASTEiJ_G0019938.1 mouse_genomes_project 13 63415146 63429003 - MGP_CASTEiJ_P0037082 Zfp367 protein_coding protein_coding MGP_CASTEiJ_T0035957.1 MGP_CASTEiJ_G0019520.1 mouse_genomes_project 13 10781953 10830565 + MGP_CASTEiJ_P0035957 B3galnt2 protein_coding protein_coding MGP_CASTEiJ_T0036246.1 MGP_CASTEiJ_G0019661.1 mouse_genomes_project 13 24286655 24343611 + MGP_CASTEiJ_P0036246 protein_coding protein_coding MGP_CASTEiJ_T0037759.1 MGP_CASTEiJ_G0020166.1 mouse_genomes_project 13 104500358 104524227 + MGP_CASTEiJ_P0037759 Cenpk protein_coding protein_coding MGP_CASTEiJ_T0037760.1 MGP_CASTEiJ_G0020166.1 mouse_genomes_project 13 104500791 104525649 + MGP_CASTEiJ_P0037760 Cenpk protein_coding protein_coding MGP_CASTEiJ_T0003323.1 MGP_CASTEiJ_G0003059.1 mouse_genomes_project 13 19792623 19793439 + Gm11314 antisense antisense MGP_CASTEiJ_T0037035.1 MGP_CASTEiJ_G0019931.1 mouse_genomes_project 13 62201614 62203189 - MGP_CASTEiJ_P0037035 Tubb2b protein_coding protein_coding MGP_CASTEiJ_T0037229.1 MGP_CASTEiJ_G0020012.1 mouse_genomes_project 13 72449563 72472870 + MGP_CASTEiJ_P0037229 Tert protein_coding protein_coding MGP_CASTEiJ_T0036442.1 MGP_CASTEiJ_G0019742.1 mouse_genomes_project 13 38529809 38534261 + MGP_CASTEiJ_P0036442 Gm9979 protein_coding protein_coding MGP_CASTEiJ_T0036125.1 MGP_CASTEiJ_G0019603.1 mouse_genomes_project 13 19850880 19851801 - MGP_CASTEiJ_P0036125 Vmn1r210 protein_coding protein_coding MGP_CASTEiJ_T0011012.1 MGP_CASTEiJ_G0009200.1 mouse_genomes_project 13 5642122 5642417 + Gm23553 misc_RNA misc_RNA MGP_CASTEiJ_T0036635.1 MGP_CASTEiJ_G0019807.1 mouse_genomes_project 13 48323692 48331279 - MGP_CASTEiJ_P0036635 Gm8674 protein_coding protein_coding MGP_CASTEiJ_T0037013.1 MGP_CASTEiJ_G0019913.1 mouse_genomes_project 13 60047492 60051973 - MGP_CASTEiJ_P0037013 BC051665 protein_coding protein_coding MGP_CASTEiJ_T0036087.1 MGP_CASTEiJ_G0019574.1 mouse_genomes_project 13 18796930 18909994 + MGP_CASTEiJ_P0036087 Hist1h2br protein_coding protein_coding MGP_CASTEiJ_T0036782.1 MGP_CASTEiJ_G0019844.1 mouse_genomes_project 13 53661864 53669288 + MGP_CASTEiJ_P0036782 Tspan17 protein_coding protein_coding MGP_CASTEiJ_T0036783.1 MGP_CASTEiJ_G0019844.1 mouse_genomes_project 13 53661890 53669280 + MGP_CASTEiJ_P0036783 Tspan17 protein_coding protein_coding MGP_CASTEiJ_T0036784.1 MGP_CASTEiJ_G0019844.1 mouse_genomes_project 13 53661950 53668698 + MGP_CASTEiJ_P0036784 Tspan17 protein_coding protein_coding MGP_CASTEiJ_T0036785.1 MGP_CASTEiJ_G0019844.1 mouse_genomes_project 13 53662082 53668629 + MGP_CASTEiJ_P0036785 Tspan17 protein_coding protein_coding MGP_CASTEiJ_T0036786.1 MGP_CASTEiJ_G0019844.1 mouse_genomes_project 13 53662082 53668733 + MGP_CASTEiJ_P0036786 Tspan17 protein_coding protein_coding MGP_CASTEiJ_T0036787.1 MGP_CASTEiJ_G0019844.1 mouse_genomes_project 13 53662132 53667625 + MGP_CASTEiJ_P0036787 Tspan17 protein_coding protein_coding MGP_CASTEiJ_T0036788.1 MGP_CASTEiJ_G0019844.1 mouse_genomes_project 13 53665212 53668676 + MGP_CASTEiJ_P0036788 Tspan17 protein_coding protein_coding MGP_CASTEiJ_T0036789.1 MGP_CASTEiJ_G0019844.1 mouse_genomes_project 13 53665343 53669287 + MGP_CASTEiJ_P0036789 Tspan17 protein_coding protein_coding MGP_CASTEiJ_T0036790.1 MGP_CASTEiJ_G0019844.1 mouse_genomes_project 13 53667860 53669280 + Tspan17 protein_coding retained_intron MGP_CASTEiJ_T0036455.1 MGP_CASTEiJ_G0019747.1 mouse_genomes_project 13 38880190 38932779 - MGP_CASTEiJ_P0036455 Mak protein_coding unknown_likely_coding MGP_CASTEiJ_T0036456.1 MGP_CASTEiJ_G0019747.1 mouse_genomes_project 13 38880305 38932770 - MGP_CASTEiJ_P0036456 Mak protein_coding protein_coding MGP_CASTEiJ_T0036457.1 MGP_CASTEiJ_G0019747.1 mouse_genomes_project 13 38880305 38923531 - MGP_CASTEiJ_P0036457 Mak protein_coding protein_coding MGP_CASTEiJ_T0036458.1 MGP_CASTEiJ_G0019747.1 mouse_genomes_project 13 38880305 38932770 - MGP_CASTEiJ_P0036458 Mak protein_coding protein_coding MGP_CASTEiJ_T0037642.1 MGP_CASTEiJ_G0020136.1 mouse_genomes_project 13 99365720 99442435 + MGP_CASTEiJ_P0037642 Mrps27 protein_coding protein_coding MGP_CASTEiJ_T0098494.1 MGP_CASTEiJ_G0035425.1 mouse_genomes_project 13 10953970 10954083 - n-R5s52 rRNA rRNA MGP_CASTEiJ_T0036657.1 MGP_CASTEiJ_G0019815.1 mouse_genomes_project 13 50266748 50303383 + MGP_CASTEiJ_P0036657 Secisbp2 protein_coding protein_coding MGP_CASTEiJ_T0036658.1 MGP_CASTEiJ_G0019815.1 mouse_genomes_project 13 50266792 50282778 + MGP_CASTEiJ_P0036658 Secisbp2 protein_coding protein_coding MGP_CASTEiJ_T0036659.1 MGP_CASTEiJ_G0019815.1 mouse_genomes_project 13 50266848 50273608 + Secisbp2 protein_coding processed_transcript MGP_CASTEiJ_T0036660.1 MGP_CASTEiJ_G0019815.1 mouse_genomes_project 13 50266848 50281701 + Secisbp2 protein_coding processed_transcript MGP_CASTEiJ_T0036661.1 MGP_CASTEiJ_G0019815.1 mouse_genomes_project 13 50299067 50301868 + Secisbp2 protein_coding retained_intron MGP_CASTEiJ_T0036662.1 MGP_CASTEiJ_G0019815.1 mouse_genomes_project 13 50301107 50302829 + Secisbp2 protein_coding retained_intron MGP_CASTEiJ_T0037250.1 MGP_CASTEiJ_G0020021.1 mouse_genomes_project 13 72847577 72871495 + Tppp protein_coding processed_transcript MGP_CASTEiJ_T0037251.1 MGP_CASTEiJ_G0020021.1 mouse_genomes_project 13 72847589 72875885 + MGP_CASTEiJ_P0037251 Tppp protein_coding protein_coding MGP_CASTEiJ_T0037252.1 MGP_CASTEiJ_G0020021.1 mouse_genomes_project 13 72847603 72861563 + Tppp protein_coding retained_intron MGP_CASTEiJ_T0037253.1 MGP_CASTEiJ_G0020021.1 mouse_genomes_project 13 72870873 72873735 + Tppp protein_coding processed_transcript MGP_CASTEiJ_T0100584.1 MGP_CASTEiJ_G0037497.1 mouse_genomes_project 13 78172609 78172753 + Gm25383 snoRNA snoRNA MGP_CASTEiJ_T0012575.1 MGP_CASTEiJ_G0010738.1 mouse_genomes_project 13 75686147 75687439 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036273.1 MGP_CASTEiJ_G0019677.1 mouse_genomes_project 13 25321290 25328497 + MGP_CASTEiJ_P0036273 Prl4a1 protein_coding protein_coding MGP_CASTEiJ_T0009697.1 MGP_CASTEiJ_G0007885.1 mouse_genomes_project 13 90192224 90192334 + Gm44338 miRNA miRNA MGP_CASTEiJ_T0012557.1 MGP_CASTEiJ_G0010720.1 mouse_genomes_project 13 53713804 53714060 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037628.1 MGP_CASTEiJ_G0020131.1 mouse_genomes_project 13 98683440 98796115 - MGP_CASTEiJ_P0037628 protein_coding protein_coding MGP_CASTEiJ_T0037629.1 MGP_CASTEiJ_G0020131.1 mouse_genomes_project 13 98683440 98796115 - MGP_CASTEiJ_P0037629 protein_coding protein_coding MGP_CASTEiJ_T0037630.1 MGP_CASTEiJ_G0020131.1 mouse_genomes_project 13 98684744 98795821 - MGP_CASTEiJ_P0037630 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037631.1 MGP_CASTEiJ_G0020131.1 mouse_genomes_project 13 98715208 98796115 - MGP_CASTEiJ_P0037631 protein_coding protein_coding MGP_CASTEiJ_T0037632.1 MGP_CASTEiJ_G0020131.1 mouse_genomes_project 13 98717132 98796115 - MGP_CASTEiJ_P0037632 protein_coding protein_coding MGP_CASTEiJ_T0037633.1 MGP_CASTEiJ_G0020131.1 mouse_genomes_project 13 98718816 98763089 - MGP_CASTEiJ_P0037633 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037838.1 MGP_CASTEiJ_G0020188.1 mouse_genomes_project 13 110985484 110993549 + MGP_CASTEiJ_P0037838 Plk2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037839.1 MGP_CASTEiJ_G0020188.1 mouse_genomes_project 13 110985534 110992798 + MGP_CASTEiJ_P0037839 Plk2 protein_coding protein_coding MGP_CASTEiJ_T0037091.1 MGP_CASTEiJ_G0019945.1 mouse_genomes_project 13 64018696 64189092 - MGP_CASTEiJ_P0037091 Cntnap3 protein_coding protein_coding MGP_CASTEiJ_T0102058.1 MGP_CASTEiJ_G0038783.1 mouse_genomes_project 13 30387724 30390934 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000858.1 MGP_CASTEiJ_G0000797.1 mouse_genomes_project 13 99685334 99686164 + TEC TEC MGP_CASTEiJ_T0036767.1 MGP_CASTEiJ_G0019841.1 mouse_genomes_project 13 53608249 53622881 - MGP_CASTEiJ_P0036767 Gprin1 protein_coding protein_coding MGP_CASTEiJ_T0012591.1 MGP_CASTEiJ_G0010754.1 mouse_genomes_project 13 105272513 105272921 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102055.1 MGP_CASTEiJ_G0038780.1 mouse_genomes_project 13 20787393 20788950 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102047.1 MGP_CASTEiJ_G0038772.1 mouse_genomes_project 13 19938760 19939721 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0036176.1 MGP_CASTEiJ_G0019639.1 mouse_genomes_project 13 20933606 20940567 + MGP_CASTEiJ_P0036176 Slc17a1 protein_coding protein_coding MGP_CASTEiJ_T0036177.1 MGP_CASTEiJ_G0019639.1 mouse_genomes_project 13 20933860 20962301 + MGP_CASTEiJ_P0036177 Slc17a1 protein_coding protein_coding MGP_CASTEiJ_T0036178.1 MGP_CASTEiJ_G0019639.1 mouse_genomes_project 13 20936148 20942409 + Slc17a1 protein_coding processed_transcript MGP_CASTEiJ_T0006363.1 MGP_CASTEiJ_G0005296.1 mouse_genomes_project 13 28759797 28761988 - Gm11374 lincRNA lincRNA MGP_CASTEiJ_T0006459.1 MGP_CASTEiJ_G0005361.1 mouse_genomes_project 13 101577100 101650068 + lincRNA lincRNA MGP_CASTEiJ_T0036083.1 MGP_CASTEiJ_G0019571.1 mouse_genomes_project 13 18770137 18771129 + MGP_CASTEiJ_P0036083 protein_coding protein_coding MGP_CASTEiJ_T0003318.1 MGP_CASTEiJ_G0003055.1 mouse_genomes_project 13 16114378 16145814 - Gm43385 antisense antisense MGP_CASTEiJ_T0037785.1 MGP_CASTEiJ_G0020176.1 mouse_genomes_project 13 107326314 107339319 + MGP_CASTEiJ_P0037785 Dimt1 protein_coding protein_coding MGP_CASTEiJ_T0035988.1 MGP_CASTEiJ_G0019528.1 mouse_genomes_project 13 12309975 12573974 + MGP_CASTEiJ_P0035988 Gli3 protein_coding protein_coding MGP_CASTEiJ_T0035989.1 MGP_CASTEiJ_G0019528.1 mouse_genomes_project 13 12309991 12497179 + Gli3 protein_coding processed_transcript MGP_CASTEiJ_T0035990.1 MGP_CASTEiJ_G0019528.1 mouse_genomes_project 13 12310451 12521903 + Gli3 protein_coding retained_intron MGP_CASTEiJ_T0035991.1 MGP_CASTEiJ_G0019528.1 mouse_genomes_project 13 12310708 12588910 + MGP_CASTEiJ_P0035991 Gli3 protein_coding protein_coding MGP_CASTEiJ_T0036932.1 MGP_CASTEiJ_G0019892.1 mouse_genomes_project 13 57245655 57290114 - MGP_CASTEiJ_P0036932 Ubqln1 protein_coding protein_coding MGP_CASTEiJ_T0036933.1 MGP_CASTEiJ_G0019892.1 mouse_genomes_project 13 57245655 57290114 - MGP_CASTEiJ_P0036933 Ubqln1 protein_coding protein_coding MGP_CASTEiJ_T0036934.1 MGP_CASTEiJ_G0019892.1 mouse_genomes_project 13 57251521 57290012 - MGP_CASTEiJ_P0036934 Ubqln1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009683.1 MGP_CASTEiJ_G0007871.1 mouse_genomes_project 13 54442161 54442229 - Mir6945 miRNA miRNA MGP_CASTEiJ_T0037935.1 MGP_CASTEiJ_G0020226.1 mouse_genomes_project 13 119863114 119995513 + Fgf10 protein_coding processed_transcript MGP_CASTEiJ_T0037936.1 MGP_CASTEiJ_G0020226.1 mouse_genomes_project 13 119863147 119985459 + Fgf10 protein_coding processed_transcript MGP_CASTEiJ_T0037937.1 MGP_CASTEiJ_G0020226.1 mouse_genomes_project 13 119914010 119998261 + MGP_CASTEiJ_P0037937 Fgf10 protein_coding protein_coding MGP_CASTEiJ_T0037698.1 MGP_CASTEiJ_G0020153.1 mouse_genomes_project 13 100909369 100927500 - MGP_CASTEiJ_P0037698 Cenph protein_coding protein_coding MGP_CASTEiJ_T0037699.1 MGP_CASTEiJ_G0020153.1 mouse_genomes_project 13 100922334 100927385 - Cenph protein_coding retained_intron MGP_CASTEiJ_T0037153.1 MGP_CASTEiJ_G0019977.1 mouse_genomes_project 13 66216103 66216850 + MGP_CASTEiJ_P0037153 protein_coding protein_coding MGP_CASTEiJ_T0037178.1 MGP_CASTEiJ_G0019990.1 mouse_genomes_project 13 66635505 66645735 + MGP_CASTEiJ_P0037178 Zfp493 protein_coding protein_coding MGP_CASTEiJ_T0037179.1 MGP_CASTEiJ_G0019990.1 mouse_genomes_project 13 66635505 66648493 + MGP_CASTEiJ_P0037179 Zfp493 protein_coding protein_coding MGP_CASTEiJ_T0037180.1 MGP_CASTEiJ_G0019990.1 mouse_genomes_project 13 66641620 66646575 + Zfp493 protein_coding retained_intron MGP_CASTEiJ_T0016600.1 MGP_CASTEiJ_G0014560.1 mouse_genomes_project 13 19109621 19111181 + Gm11291 processed_transcript processed_transcript MGP_CASTEiJ_T0036614.1 MGP_CASTEiJ_G0019798.1 mouse_genomes_project 13 47740492 47788287 + MGP_CASTEiJ_P0036614 Bicd2 protein_coding protein_coding MGP_CASTEiJ_T0036615.1 MGP_CASTEiJ_G0019798.1 mouse_genomes_project 13 47740492 47788287 + MGP_CASTEiJ_P0036615 Bicd2 protein_coding protein_coding MGP_CASTEiJ_T0036616.1 MGP_CASTEiJ_G0019798.1 mouse_genomes_project 13 47740492 47788287 + MGP_CASTEiJ_P0036616 Bicd2 protein_coding protein_coding MGP_CASTEiJ_T0036617.1 MGP_CASTEiJ_G0019798.1 mouse_genomes_project 13 47740573 47788286 + MGP_CASTEiJ_P0036617 Bicd2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0102032.1 MGP_CASTEiJ_G0038757.1 mouse_genomes_project 13 19402988 19403855 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0036065.1 MGP_CASTEiJ_G0019559.1 mouse_genomes_project 13 18527189 18528658 - MGP_CASTEiJ_P0036065 Nkapl protein_coding protein_coding MGP_CASTEiJ_T0003377.1 MGP_CASTEiJ_G0003091.1 mouse_genomes_project 13 91952278 91965432 - C030017D09Rik antisense antisense MGP_CASTEiJ_T0100592.1 MGP_CASTEiJ_G0037505.1 mouse_genomes_project 13 105595110 105595240 - Gm25631 snoRNA snoRNA MGP_CASTEiJ_T0036611.1 MGP_CASTEiJ_G0019797.1 mouse_genomes_project 13 47656729 47704449 - MGP_CASTEiJ_P0036611 Fgd3 protein_coding protein_coding MGP_CASTEiJ_T0036612.1 MGP_CASTEiJ_G0019797.1 mouse_genomes_project 13 47658329 47694172 - MGP_CASTEiJ_P0036612 Fgd3 protein_coding protein_coding MGP_CASTEiJ_T0036613.1 MGP_CASTEiJ_G0019797.1 mouse_genomes_project 13 47668409 47717913 - MGP_CASTEiJ_P0036613 Fgd3 protein_coding protein_coding MGP_CASTEiJ_T0037221.1 MGP_CASTEiJ_G0020009.1 mouse_genomes_project 13 72284682 72338085 + MGP_CASTEiJ_P0037221 Lpcat1 protein_coding protein_coding MGP_CASTEiJ_T0037222.1 MGP_CASTEiJ_G0020009.1 mouse_genomes_project 13 72284682 72338085 + MGP_CASTEiJ_P0037222 Lpcat1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037223.1 MGP_CASTEiJ_G0020009.1 mouse_genomes_project 13 72284716 72336780 + MGP_CASTEiJ_P0037223 Lpcat1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037224.1 MGP_CASTEiJ_G0020009.1 mouse_genomes_project 13 72284908 72321410 + Lpcat1 protein_coding retained_intron MGP_CASTEiJ_T0037225.1 MGP_CASTEiJ_G0020009.1 mouse_genomes_project 13 72323920 72335496 + Lpcat1 protein_coding retained_intron MGP_CASTEiJ_T0037226.1 MGP_CASTEiJ_G0020009.1 mouse_genomes_project 13 72332064 72332723 + Lpcat1 protein_coding retained_intron MGP_CASTEiJ_T0036043.1 MGP_CASTEiJ_G0019550.1 mouse_genomes_project 13 18260732 18262276 - MGP_CASTEiJ_P0036043 protein_coding protein_coding MGP_CASTEiJ_T0012555.1 MGP_CASTEiJ_G0010718.1 mouse_genomes_project 13 43280560 43281563 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100590.1 MGP_CASTEiJ_G0037503.1 mouse_genomes_project 13 95001026 95001158 + Gm22661 snoRNA snoRNA MGP_CASTEiJ_T0037002.1 MGP_CASTEiJ_G0019907.1 mouse_genomes_project 13 58919900 58926486 + MGP_CASTEiJ_P0037002 Spata31d1b protein_coding protein_coding MGP_CASTEiJ_T0037615.1 MGP_CASTEiJ_G0020126.1 mouse_genomes_project 13 98217451 98245903 + MGP_CASTEiJ_P0037615 Gm21976 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037616.1 MGP_CASTEiJ_G0020126.1 mouse_genomes_project 13 98217456 98232687 + MGP_CASTEiJ_P0037616 Gm21976 protein_coding protein_coding MGP_CASTEiJ_T0037617.1 MGP_CASTEiJ_G0020126.1 mouse_genomes_project 13 98217502 98245903 + MGP_CASTEiJ_P0037617 Gm21976 protein_coding protein_coding MGP_CASTEiJ_T0037618.1 MGP_CASTEiJ_G0020126.1 mouse_genomes_project 13 98241229 98245841 + MGP_CASTEiJ_P0037618 Gm21976 protein_coding protein_coding MGP_CASTEiJ_T0003396.1 MGP_CASTEiJ_G0003103.1 mouse_genomes_project 13 119888194 119914708 - Gm16263 antisense antisense MGP_CASTEiJ_T0037245.1 MGP_CASTEiJ_G0020018.1 mouse_genomes_project 13 72770949 72794390 + MGP_CASTEiJ_P0037245 Brd9 protein_coding protein_coding MGP_CASTEiJ_T0037246.1 MGP_CASTEiJ_G0020018.1 mouse_genomes_project 13 72770955 72794388 + MGP_CASTEiJ_P0037246 Brd9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037247.1 MGP_CASTEiJ_G0020018.1 mouse_genomes_project 13 72773819 72794388 + MGP_CASTEiJ_P0037247 Brd9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037555.1 MGP_CASTEiJ_G0020105.1 mouse_genomes_project 13 95195566 95209777 - MGP_CASTEiJ_P0037555 F2rl1 protein_coding protein_coding MGP_CASTEiJ_T0006362.1 MGP_CASTEiJ_G0005295.1 mouse_genomes_project 13 28757490 28758665 - Gm11373 lincRNA lincRNA MGP_CASTEiJ_T0037794.1 MGP_CASTEiJ_G0020178.1 mouse_genomes_project 13 107423742 107425431 + MGP_CASTEiJ_P0037794 3830408C21Rik protein_coding protein_coding MGP_CASTEiJ_T0037031.1 MGP_CASTEiJ_G0019929.1 mouse_genomes_project 13 62053378 62075990 - MGP_CASTEiJ_P0037031 Fbp2 protein_coding protein_coding MGP_CASTEiJ_T0036538.1 MGP_CASTEiJ_G0019774.1 mouse_genomes_project 13 44363281 44378774 - MGP_CASTEiJ_P0036538 Gm10113 protein_coding protein_coding MGP_CASTEiJ_T0000860.1 MGP_CASTEiJ_G0000799.1 mouse_genomes_project 13 101625697 101626189 - TEC TEC MGP_CASTEiJ_T0036938.1 MGP_CASTEiJ_G0019896.1 mouse_genomes_project 13 57479969 57487836 - MGP_CASTEiJ_P0036938 Hnrnpk protein_coding protein_coding MGP_CASTEiJ_T0036939.1 MGP_CASTEiJ_G0019896.1 mouse_genomes_project 13 57479969 57492249 - MGP_CASTEiJ_P0036939 Hnrnpk protein_coding protein_coding MGP_CASTEiJ_T0036940.1 MGP_CASTEiJ_G0019896.1 mouse_genomes_project 13 57480068 57492434 - MGP_CASTEiJ_P0036940 Hnrnpk protein_coding protein_coding MGP_CASTEiJ_T0036941.1 MGP_CASTEiJ_G0019896.1 mouse_genomes_project 13 57482222 57491982 - MGP_CASTEiJ_P0036941 Hnrnpk protein_coding protein_coding MGP_CASTEiJ_T0036942.1 MGP_CASTEiJ_G0019896.1 mouse_genomes_project 13 57484127 57491927 - MGP_CASTEiJ_P0036942 Hnrnpk protein_coding protein_coding MGP_CASTEiJ_T0036943.1 MGP_CASTEiJ_G0019896.1 mouse_genomes_project 13 57484320 57485501 - Hnrnpk protein_coding retained_intron MGP_CASTEiJ_T0036944.1 MGP_CASTEiJ_G0019896.1 mouse_genomes_project 13 57484383 57486846 - Hnrnpk protein_coding retained_intron MGP_CASTEiJ_T0036945.1 MGP_CASTEiJ_G0019896.1 mouse_genomes_project 13 57484441 57491888 - MGP_CASTEiJ_P0036945 Hnrnpk protein_coding protein_coding MGP_CASTEiJ_T0036946.1 MGP_CASTEiJ_G0019896.1 mouse_genomes_project 13 57484470 57486727 - Hnrnpk protein_coding retained_intron MGP_CASTEiJ_T0036947.1 MGP_CASTEiJ_G0019896.1 mouse_genomes_project 13 57484975 57492292 - MGP_CASTEiJ_P0036947 Hnrnpk protein_coding protein_coding MGP_CASTEiJ_T0036948.1 MGP_CASTEiJ_G0019896.1 mouse_genomes_project 13 57485045 57487798 - Hnrnpk protein_coding retained_intron MGP_CASTEiJ_T0036949.1 MGP_CASTEiJ_G0019896.1 mouse_genomes_project 13 57485050 57487798 - MGP_CASTEiJ_P0036949 Hnrnpk protein_coding protein_coding MGP_CASTEiJ_T0036950.1 MGP_CASTEiJ_G0019896.1 mouse_genomes_project 13 57485669 57491895 - Hnrnpk protein_coding retained_intron MGP_CASTEiJ_T0036951.1 MGP_CASTEiJ_G0019896.1 mouse_genomes_project 13 57486817 57491901 - MGP_CASTEiJ_P0036951 Hnrnpk protein_coding protein_coding MGP_CASTEiJ_T0036952.1 MGP_CASTEiJ_G0019896.1 mouse_genomes_project 13 57488502 57492287 - Hnrnpk protein_coding retained_intron MGP_CASTEiJ_T0011015.1 MGP_CASTEiJ_G0009203.1 mouse_genomes_project 13 10189198 10189462 + Gm24065 misc_RNA misc_RNA MGP_CASTEiJ_T0006443.1 MGP_CASTEiJ_G0005349.1 mouse_genomes_project 13 93727770 93730442 - Gm15907 lincRNA lincRNA MGP_CASTEiJ_T0037878.1 MGP_CASTEiJ_G0020200.1 mouse_genomes_project 13 113616539 113674398 - MGP_CASTEiJ_P0037878 Skiv2l2 protein_coding protein_coding MGP_CASTEiJ_T0009674.1 MGP_CASTEiJ_G0007862.1 mouse_genomes_project 13 46876192 46876281 - Mirlet7f-1 miRNA miRNA MGP_CASTEiJ_T0036885.1 MGP_CASTEiJ_G0019876.1 mouse_genomes_project 13 55045233 55107332 - MGP_CASTEiJ_P0036885 H2afy protein_coding unknown_likely_coding MGP_CASTEiJ_T0036886.1 MGP_CASTEiJ_G0019876.1 mouse_genomes_project 13 55045238 55107599 - MGP_CASTEiJ_P0036886 H2afy protein_coding protein_coding MGP_CASTEiJ_T0036887.1 MGP_CASTEiJ_G0019876.1 mouse_genomes_project 13 55045238 55107599 - MGP_CASTEiJ_P0036887 H2afy protein_coding protein_coding MGP_CASTEiJ_T0036888.1 MGP_CASTEiJ_G0019876.1 mouse_genomes_project 13 55045787 55056250 - H2afy protein_coding retained_intron MGP_CASTEiJ_T0036889.1 MGP_CASTEiJ_G0019876.1 mouse_genomes_project 13 55045980 55061781 - H2afy protein_coding retained_intron MGP_CASTEiJ_T0036890.1 MGP_CASTEiJ_G0019876.1 mouse_genomes_project 13 55067311 55107498 - H2afy protein_coding processed_transcript MGP_CASTEiJ_T0036891.1 MGP_CASTEiJ_G0019876.1 mouse_genomes_project 13 55071915 55107408 - H2afy protein_coding retained_intron MGP_CASTEiJ_T0036892.1 MGP_CASTEiJ_G0019876.1 mouse_genomes_project 13 55075490 55108321 - H2afy protein_coding processed_transcript MGP_CASTEiJ_T0036893.1 MGP_CASTEiJ_G0019876.1 mouse_genomes_project 13 55075501 55106793 - H2afy protein_coding processed_transcript MGP_CASTEiJ_T0011033.1 MGP_CASTEiJ_G0009221.1 mouse_genomes_project 13 108986656 108986847 - Gm28016 misc_RNA misc_RNA MGP_CASTEiJ_T0036371.1 MGP_CASTEiJ_G0019716.1 mouse_genomes_project 13 32246532 32261834 + MGP_CASTEiJ_P0036371 Fam50b protein_coding protein_coding MGP_CASTEiJ_T0037287.1 MGP_CASTEiJ_G0020035.1 mouse_genomes_project 13 74685974 74753108 + MGP_CASTEiJ_P0037287 Ell2 protein_coding protein_coding MGP_CASTEiJ_T0035854.1 MGP_CASTEiJ_G0019495.1 mouse_genomes_project 13 2378731 2393160 + MGP_CASTEiJ_P0035854 Klf6 protein_coding protein_coding MGP_CASTEiJ_T0037643.1 MGP_CASTEiJ_G0020137.1 mouse_genomes_project 13 99448266 99546355 - MGP_CASTEiJ_P0037643 Map1b protein_coding protein_coding MGP_CASTEiJ_T0037644.1 MGP_CASTEiJ_G0020137.1 mouse_genomes_project 13 99452542 99546339 - MGP_CASTEiJ_P0037644 Map1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0037239.1 MGP_CASTEiJ_G0020015.1 mouse_genomes_project 13 72563961 72666170 + MGP_CASTEiJ_P0037239 Slc12a7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037240.1 MGP_CASTEiJ_G0020015.1 mouse_genomes_project 13 72596905 72649836 + MGP_CASTEiJ_P0037240 Slc12a7 protein_coding protein_coding MGP_CASTEiJ_T0012536.1 MGP_CASTEiJ_G0010699.1 mouse_genomes_project 13 24064876 24065182 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006421.1 MGP_CASTEiJ_G0005334.1 mouse_genomes_project 13 67768989 67772469 + Gm26844 lincRNA lincRNA MGP_CASTEiJ_T0036185.1 MGP_CASTEiJ_G0019644.1 mouse_genomes_project 13 21086824 21182677 - MGP_CASTEiJ_P0036185 Lrrc16a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036186.1 MGP_CASTEiJ_G0019644.1 mouse_genomes_project 13 21086964 21097074 - MGP_CASTEiJ_P0036186 Lrrc16a protein_coding protein_coding MGP_CASTEiJ_T0036187.1 MGP_CASTEiJ_G0019644.1 mouse_genomes_project 13 21087138 21364329 - MGP_CASTEiJ_P0036187 Lrrc16a protein_coding protein_coding MGP_CASTEiJ_T0036188.1 MGP_CASTEiJ_G0019644.1 mouse_genomes_project 13 21087540 21364265 - MGP_CASTEiJ_P0036188 Lrrc16a protein_coding protein_coding MGP_CASTEiJ_T0036189.1 MGP_CASTEiJ_G0019644.1 mouse_genomes_project 13 21104336 21128759 - Lrrc16a protein_coding processed_transcript MGP_CASTEiJ_T0036190.1 MGP_CASTEiJ_G0019644.1 mouse_genomes_project 13 21133717 21173902 - Lrrc16a protein_coding retained_intron MGP_CASTEiJ_T0036191.1 MGP_CASTEiJ_G0019644.1 mouse_genomes_project 13 21182652 21186920 - Lrrc16a protein_coding processed_transcript MGP_CASTEiJ_T0036192.1 MGP_CASTEiJ_G0019644.1 mouse_genomes_project 13 21212219 21364327 - Lrrc16a protein_coding retained_intron MGP_CASTEiJ_T0036193.1 MGP_CASTEiJ_G0019644.1 mouse_genomes_project 13 21213799 21229684 - Lrrc16a protein_coding processed_transcript MGP_CASTEiJ_T0036194.1 MGP_CASTEiJ_G0019644.1 mouse_genomes_project 13 21229911 21364035 - MGP_CASTEiJ_P0036194 Lrrc16a protein_coding protein_coding MGP_CASTEiJ_T0036195.1 MGP_CASTEiJ_G0019644.1 mouse_genomes_project 13 21239300 21284027 - MGP_CASTEiJ_P0036195 Lrrc16a protein_coding protein_coding MGP_CASTEiJ_T0036196.1 MGP_CASTEiJ_G0019644.1 mouse_genomes_project 13 21250317 21321255 - Lrrc16a protein_coding processed_transcript MGP_CASTEiJ_T0037170.1 MGP_CASTEiJ_G0019985.1 mouse_genomes_project 13 66460182 66479629 - MGP_CASTEiJ_P0037170 Zfp65 protein_coding protein_coding MGP_CASTEiJ_T0036904.1 MGP_CASTEiJ_G0019884.1 mouse_genomes_project 13 55551839 55558039 - MGP_CASTEiJ_P0036904 Lect2 protein_coding protein_coding MGP_CASTEiJ_T0102061.1 MGP_CASTEiJ_G0038786.1 mouse_genomes_project 13 31057805 31077701 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0036267.1 MGP_CASTEiJ_G0019672.1 mouse_genomes_project 13 24806440 24816111 - MGP_CASTEiJ_P0036267 Prl7b1 protein_coding protein_coding MGP_CASTEiJ_T0035941.1 MGP_CASTEiJ_G0019512.1 mouse_genomes_project 13 9067209 9077924 - Lgals8 protein_coding retained_intron MGP_CASTEiJ_T0035942.1 MGP_CASTEiJ_G0019512.1 mouse_genomes_project 13 9068639 9090219 - MGP_CASTEiJ_P0035942 Lgals8 protein_coding protein_coding MGP_CASTEiJ_T0035943.1 MGP_CASTEiJ_G0019512.1 mouse_genomes_project 13 9068639 9090194 - MGP_CASTEiJ_P0035943 Lgals8 protein_coding protein_coding MGP_CASTEiJ_T0035944.1 MGP_CASTEiJ_G0019512.1 mouse_genomes_project 13 9080345 9085459 - Lgals8 protein_coding retained_intron MGP_CASTEiJ_T0035945.1 MGP_CASTEiJ_G0019512.1 mouse_genomes_project 13 9081683 9083955 - Lgals8 protein_coding retained_intron MGP_CASTEiJ_T0035946.1 MGP_CASTEiJ_G0019512.1 mouse_genomes_project 13 9087969 9089746 - Lgals8 protein_coding processed_transcript MGP_CASTEiJ_T0036106.1 MGP_CASTEiJ_G0019584.1 mouse_genomes_project 13 19129590 19129928 - MGP_CASTEiJ_P0036106 protein_coding protein_coding MGP_CASTEiJ_T0100560.1 MGP_CASTEiJ_G0037473.1 mouse_genomes_project 13 21404191 21404314 - Gm23340 snoRNA snoRNA MGP_CASTEiJ_T0006418.1 MGP_CASTEiJ_G0005332.1 mouse_genomes_project 13 62525130 62532757 - Gm16907 lincRNA lincRNA MGP_CASTEiJ_T0036583.1 MGP_CASTEiJ_G0019790.1 mouse_genomes_project 13 47012626 47016122 + MGP_CASTEiJ_P0036583 Barx1 protein_coding protein_coding MGP_CASTEiJ_T0037964.1 MGP_CASTEiJ_G0020237.1 mouse_genomes_project 13 120909618 120937390 - MGP_CASTEiJ_P0037964 Zfp131 protein_coding protein_coding MGP_CASTEiJ_T0037965.1 MGP_CASTEiJ_G0020237.1 mouse_genomes_project 13 120909692 120937431 - MGP_CASTEiJ_P0037965 Zfp131 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006422.1 MGP_CASTEiJ_G0005335.1 mouse_genomes_project 13 68487951 68494468 - Gm26819 lincRNA lincRNA MGP_CASTEiJ_T0037020.1 MGP_CASTEiJ_G0019919.1 mouse_genomes_project 13 60199659 60204178 - MGP_CASTEiJ_P0037020 Tpbpa protein_coding protein_coding MGP_CASTEiJ_T0006348.1 MGP_CASTEiJ_G0005285.1 mouse_genomes_project 13 21456073 21465258 - Gm11345 lincRNA lincRNA MGP_CASTEiJ_T0099360.1 MGP_CASTEiJ_G0036273.1 mouse_genomes_project 13 95601332 95601491 - Gm24032 snRNA snRNA MGP_CASTEiJ_T0037689.1 MGP_CASTEiJ_G0020150.1 mouse_genomes_project 13 100810332 100844561 + MGP_CASTEiJ_P0037689 Ccdc125 protein_coding protein_coding MGP_CASTEiJ_T0037690.1 MGP_CASTEiJ_G0020150.1 mouse_genomes_project 13 100810332 100844561 + MGP_CASTEiJ_P0037690 Ccdc125 protein_coding protein_coding MGP_CASTEiJ_T0036023.1 MGP_CASTEiJ_G0019541.1 mouse_genomes_project 13 16593272 16602912 + MGP_CASTEiJ_P0036023 Sfrp4 protein_coding protein_coding MGP_CASTEiJ_T0036024.1 MGP_CASTEiJ_G0019541.1 mouse_genomes_project 13 16593601 16607380 + MGP_CASTEiJ_P0036024 Sfrp4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0000851.1 MGP_CASTEiJ_G0000790.1 mouse_genomes_project 13 84613040 84613278 - TEC TEC MGP_CASTEiJ_T0098712.1 MGP_CASTEiJ_G0035643.1 mouse_genomes_project 13 31111378 31111590 + Gm25043 ribozyme ribozyme MGP_CASTEiJ_T0037355.1 MGP_CASTEiJ_G0020054.1 mouse_genomes_project 13 80875010 80890353 + MGP_CASTEiJ_P0037355 Cetn3 protein_coding protein_coding MGP_CASTEiJ_T0006425.1 MGP_CASTEiJ_G0005337.1 mouse_genomes_project 13 71401775 71402607 - Gm20554 lincRNA lincRNA MGP_CASTEiJ_T0037102.1 MGP_CASTEiJ_G0019953.1 mouse_genomes_project 13 64560756 64563448 + MGP_CASTEiJ_P0037102 Gm10775 protein_coding protein_coding MGP_CASTEiJ_T0037931.1 MGP_CASTEiJ_G0020223.1 mouse_genomes_project 13 118706372 119121411 + MGP_CASTEiJ_P0037931 Hcn1 protein_coding protein_coding MGP_CASTEiJ_T0003361.1 MGP_CASTEiJ_G0003085.1 mouse_genomes_project 13 72532170 72541820 + Slc6a19os antisense antisense MGP_CASTEiJ_T0003362.1 MGP_CASTEiJ_G0003085.1 mouse_genomes_project 13 72536070 72540909 + Slc6a19os antisense antisense MGP_CASTEiJ_T0036473.1 MGP_CASTEiJ_G0019756.1 mouse_genomes_project 13 39668704 39753314 - MGP_CASTEiJ_P0036473 Adtrp protein_coding protein_coding MGP_CASTEiJ_T0036474.1 MGP_CASTEiJ_G0019756.1 mouse_genomes_project 13 39669689 39753510 - MGP_CASTEiJ_P0036474 Adtrp protein_coding protein_coding MGP_CASTEiJ_T0036475.1 MGP_CASTEiJ_G0019756.1 mouse_genomes_project 13 39670147 39753442 - MGP_CASTEiJ_P0036475 Adtrp protein_coding protein_coding MGP_CASTEiJ_T0036476.1 MGP_CASTEiJ_G0019756.1 mouse_genomes_project 13 39683034 39733275 - MGP_CASTEiJ_P0036476 Adtrp protein_coding protein_coding MGP_CASTEiJ_T0036958.1 MGP_CASTEiJ_G0019899.1 mouse_genomes_project 13 57915861 58058221 + MGP_CASTEiJ_P0036958 Ntrk2 protein_coding protein_coding MGP_CASTEiJ_T0036959.1 MGP_CASTEiJ_G0019899.1 mouse_genomes_project 13 57917167 58259730 + MGP_CASTEiJ_P0036959 Ntrk2 protein_coding protein_coding MGP_CASTEiJ_T0036960.1 MGP_CASTEiJ_G0019899.1 mouse_genomes_project 13 57917697 58269614 + MGP_CASTEiJ_P0036960 Ntrk2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100561.1 MGP_CASTEiJ_G0037474.1 mouse_genomes_project 13 21924194 21924316 - Gm22358 snoRNA snoRNA MGP_CASTEiJ_T0036276.1 MGP_CASTEiJ_G0019680.1 mouse_genomes_project 13 26559785 27233261 - MGP_CASTEiJ_P0036276 Cdkal1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036277.1 MGP_CASTEiJ_G0019680.1 mouse_genomes_project 13 26682019 27233288 - MGP_CASTEiJ_P0036277 Cdkal1 protein_coding protein_coding MGP_CASTEiJ_T0036278.1 MGP_CASTEiJ_G0019680.1 mouse_genomes_project 13 26761542 26834583 - MGP_CASTEiJ_P0036278 Cdkal1 protein_coding protein_coding MGP_CASTEiJ_T0036279.1 MGP_CASTEiJ_G0019680.1 mouse_genomes_project 13 26803774 26881707 - MGP_CASTEiJ_P0036279 Cdkal1 protein_coding protein_coding MGP_CASTEiJ_T0036280.1 MGP_CASTEiJ_G0019680.1 mouse_genomes_project 13 26833843 27233257 - Cdkal1 protein_coding retained_intron MGP_CASTEiJ_T0036281.1 MGP_CASTEiJ_G0019680.1 mouse_genomes_project 13 26879007 27233257 - Cdkal1 protein_coding retained_intron MGP_CASTEiJ_T0036282.1 MGP_CASTEiJ_G0019680.1 mouse_genomes_project 13 26886073 27233253 - MGP_CASTEiJ_P0036282 Cdkal1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036283.1 MGP_CASTEiJ_G0019680.1 mouse_genomes_project 13 27077840 27233271 - Cdkal1 protein_coding retained_intron MGP_CASTEiJ_T0036284.1 MGP_CASTEiJ_G0019680.1 mouse_genomes_project 13 27175649 27233277 - MGP_CASTEiJ_P0036284 Cdkal1 protein_coding protein_coding MGP_CASTEiJ_T0036285.1 MGP_CASTEiJ_G0019680.1 mouse_genomes_project 13 27213656 27233279 - MGP_CASTEiJ_P0036285 Cdkal1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036275.1 MGP_CASTEiJ_G0019679.1 mouse_genomes_project 13 26306435 26311223 - MGP_CASTEiJ_P0036275 Sox4 protein_coding protein_coding MGP_CASTEiJ_T0036077.1 MGP_CASTEiJ_G0019567.1 mouse_genomes_project 13 18676169 18677154 - MGP_CASTEiJ_P0036077 Olfr1362 protein_coding protein_coding MGP_CASTEiJ_T0037955.1 MGP_CASTEiJ_G0020231.1 mouse_genomes_project 13 120704788 120712223 + MGP_CASTEiJ_P0037955 protein_coding protein_coding MGP_CASTEiJ_T0037956.1 MGP_CASTEiJ_G0020231.1 mouse_genomes_project 13 120704886 120712223 + MGP_CASTEiJ_P0037956 protein_coding protein_coding MGP_CASTEiJ_T0037957.1 MGP_CASTEiJ_G0020231.1 mouse_genomes_project 13 120709282 120713083 + MGP_CASTEiJ_P0037957 protein_coding protein_coding MGP_CASTEiJ_T0003334.1 MGP_CASTEiJ_G0003068.1 mouse_genomes_project 13 38557069 38566402 + Gm26688 antisense antisense MGP_CASTEiJ_T0011016.1 MGP_CASTEiJ_G0009204.1 mouse_genomes_project 13 10602137 10602427 + Gm25271 misc_RNA misc_RNA MGP_CASTEiJ_T0012561.1 MGP_CASTEiJ_G0010724.1 mouse_genomes_project 13 62682733 62683069 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036102.1 MGP_CASTEiJ_G0019583.1 mouse_genomes_project 13 19095289 19102883 - MGP_CASTEiJ_P0036102 Prss16 protein_coding protein_coding MGP_CASTEiJ_T0036103.1 MGP_CASTEiJ_G0019583.1 mouse_genomes_project 13 19095673 19098347 - Prss16 protein_coding processed_transcript MGP_CASTEiJ_T0036104.1 MGP_CASTEiJ_G0019583.1 mouse_genomes_project 13 19096039 19099547 - Prss16 protein_coding processed_transcript MGP_CASTEiJ_T0036105.1 MGP_CASTEiJ_G0019583.1 mouse_genomes_project 13 19100363 19102884 - Prss16 protein_coding processed_transcript MGP_CASTEiJ_T0002425.1 MGP_CASTEiJ_G0002340.1 mouse_genomes_project 13 16239521 16239581 + MGP_CASTEiJ_P0002425 Trgj3 TR_J_gene TR_J_gene MGP_CASTEiJ_T0003389.1 MGP_CASTEiJ_G0003097.1 mouse_genomes_project 13 102990959 102993133 + Gm17160 antisense antisense MGP_CASTEiJ_T0037109.1 MGP_CASTEiJ_G0019956.1 mouse_genomes_project 13 65529102 65532998 + MGP_CASTEiJ_P0037109 Gm10767 protein_coding protein_coding MGP_CASTEiJ_T0036331.1 MGP_CASTEiJ_G0019706.1 mouse_genomes_project 13 31317962 31329005 - MGP_CASTEiJ_P0036331 Serpinb6e protein_coding protein_coding MGP_CASTEiJ_T0036332.1 MGP_CASTEiJ_G0019706.1 mouse_genomes_project 13 31326597 31329005 - MGP_CASTEiJ_P0036332 Serpinb6e protein_coding protein_coding MGP_CASTEiJ_T0036335.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31402244 31488422 - MGP_CASTEiJ_P0036335 Serpinb6a protein_coding protein_coding MGP_CASTEiJ_T0036336.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31402244 31460407 - MGP_CASTEiJ_P0036336 Serpinb6a protein_coding protein_coding MGP_CASTEiJ_T0036337.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31402244 31460296 - MGP_CASTEiJ_P0036337 Serpinb6a protein_coding protein_coding MGP_CASTEiJ_T0036338.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31402253 31460209 - MGP_CASTEiJ_P0036338 Serpinb6a protein_coding protein_coding MGP_CASTEiJ_T0036339.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31402558 31406373 - Serpinb6a protein_coding processed_transcript MGP_CASTEiJ_T0036340.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31403117 31488422 - MGP_CASTEiJ_P0036340 Serpinb6a protein_coding protein_coding MGP_CASTEiJ_T0036341.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31407239 31420272 - MGP_CASTEiJ_P0036341 Serpinb6a protein_coding protein_coding MGP_CASTEiJ_T0036342.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31407255 31460168 - MGP_CASTEiJ_P0036342 Serpinb6a protein_coding protein_coding MGP_CASTEiJ_T0036343.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31407332 31420244 - MGP_CASTEiJ_P0036343 Serpinb6a protein_coding protein_coding MGP_CASTEiJ_T0036344.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31407937 31460191 - Serpinb6a protein_coding retained_intron MGP_CASTEiJ_T0036345.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31409627 31460190 - MGP_CASTEiJ_P0036345 Serpinb6a protein_coding protein_coding MGP_CASTEiJ_T0036346.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31409699 31488395 - MGP_CASTEiJ_P0036346 Serpinb6a protein_coding protein_coding MGP_CASTEiJ_T0036347.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31414494 31460167 - MGP_CASTEiJ_P0036347 Serpinb6a protein_coding protein_coding MGP_CASTEiJ_T0036348.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31414507 31488414 - MGP_CASTEiJ_P0036348 Serpinb6a protein_coding protein_coding MGP_CASTEiJ_T0036349.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31415947 31488368 - MGP_CASTEiJ_P0036349 Serpinb6a protein_coding protein_coding MGP_CASTEiJ_T0036352.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31456169 31488395 - Serpinb6a protein_coding processed_transcript MGP_CASTEiJ_T0036353.1 MGP_CASTEiJ_G0019708.1 mouse_genomes_project 13 31471942 31488398 - Serpinb6a protein_coding processed_transcript MGP_CASTEiJ_T0037889.1 MGP_CASTEiJ_G0020207.1 mouse_genomes_project 13 113948211 113959218 - MGP_CASTEiJ_P0037889 Gzmk protein_coding protein_coding MGP_CASTEiJ_T0037890.1 MGP_CASTEiJ_G0020207.1 mouse_genomes_project 13 113948365 113959242 - MGP_CASTEiJ_P0037890 Gzmk protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037891.1 MGP_CASTEiJ_G0020207.1 mouse_genomes_project 13 113948447 113959399 - MGP_CASTEiJ_P0037891 Gzmk protein_coding unknown_likely_coding MGP_CASTEiJ_T0037146.1 MGP_CASTEiJ_G0019972.1 mouse_genomes_project 13 66034700 66087388 - MGP_CASTEiJ_P0037146 Gm28044 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037147.1 MGP_CASTEiJ_G0019972.1 mouse_genomes_project 13 66037991 66071462 - Gm28044 protein_coding processed_transcript MGP_CASTEiJ_T0035955.1 MGP_CASTEiJ_G0019519.1 mouse_genomes_project 13 10596844 10620261 + Gng4 protein_coding processed_transcript MGP_CASTEiJ_T0035956.1 MGP_CASTEiJ_G0019519.1 mouse_genomes_project 13 10597125 10643726 + MGP_CASTEiJ_P0035956 Gng4 protein_coding protein_coding MGP_CASTEiJ_T0003325.1 MGP_CASTEiJ_G0003061.1 mouse_genomes_project 13 20858108 20868208 - Gm11337 antisense antisense MGP_CASTEiJ_T0102051.1 MGP_CASTEiJ_G0038776.1 mouse_genomes_project 13 20053029 20053955 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0036002.1 MGP_CASTEiJ_G0019536.1 mouse_genomes_project 13 15024468 15320142 - MGP_CASTEiJ_P0036002 Pou6f2 protein_coding protein_coding MGP_CASTEiJ_T0036003.1 MGP_CASTEiJ_G0019536.1 mouse_genomes_project 13 15031115 15320142 - MGP_CASTEiJ_P0036003 Pou6f2 protein_coding protein_coding MGP_CASTEiJ_T0036004.1 MGP_CASTEiJ_G0019536.1 mouse_genomes_project 13 15031145 15087533 - MGP_CASTEiJ_P0036004 Pou6f2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036005.1 MGP_CASTEiJ_G0019536.1 mouse_genomes_project 13 15047981 15103682 - Pou6f2 protein_coding processed_transcript MGP_CASTEiJ_T0036006.1 MGP_CASTEiJ_G0019536.1 mouse_genomes_project 13 15047981 15087538 - MGP_CASTEiJ_P0036006 Pou6f2 protein_coding protein_coding MGP_CASTEiJ_T0036007.1 MGP_CASTEiJ_G0019536.1 mouse_genomes_project 13 15062618 15320142 - Pou6f2 protein_coding processed_transcript MGP_CASTEiJ_T0037921.1 MGP_CASTEiJ_G0020217.1 mouse_genomes_project 13 115829378 115991033 - MGP_CASTEiJ_P0037921 Itga1 protein_coding protein_coding MGP_CASTEiJ_T0000866.1 MGP_CASTEiJ_G0000805.1 mouse_genomes_project 13 117335738 117338669 + TEC TEC MGP_CASTEiJ_T0009675.1 MGP_CASTEiJ_G0007863.1 mouse_genomes_project 13 46876542 46876636 - Mirlet7a-1 miRNA miRNA MGP_CASTEiJ_T0037563.1 MGP_CASTEiJ_G0020111.1 mouse_genomes_project 13 96153071 96176808 - Ankdd1b protein_coding processed_transcript MGP_CASTEiJ_T0037564.1 MGP_CASTEiJ_G0020111.1 mouse_genomes_project 13 96153381 96218531 - MGP_CASTEiJ_P0037564 Ankdd1b protein_coding protein_coding MGP_CASTEiJ_T0037565.1 MGP_CASTEiJ_G0020111.1 mouse_genomes_project 13 96153692 96176180 - Ankdd1b protein_coding retained_intron MGP_CASTEiJ_T0037566.1 MGP_CASTEiJ_G0020111.1 mouse_genomes_project 13 96154030 96176146 - MGP_CASTEiJ_P0037566 Ankdd1b protein_coding protein_coding MGP_CASTEiJ_T0037567.1 MGP_CASTEiJ_G0020111.1 mouse_genomes_project 13 96176137 96185875 - Ankdd1b protein_coding retained_intron MGP_CASTEiJ_T0037568.1 MGP_CASTEiJ_G0020111.1 mouse_genomes_project 13 96184198 96218574 - MGP_CASTEiJ_P0037568 Ankdd1b protein_coding protein_coding MGP_CASTEiJ_T0037526.1 MGP_CASTEiJ_G0020097.1 mouse_genomes_project 13 94417283 94472140 + MGP_CASTEiJ_P0037526 Tbca protein_coding protein_coding MGP_CASTEiJ_T0036044.1 MGP_CASTEiJ_G0019551.1 mouse_genomes_project 13 18261394 18262197 - MGP_CASTEiJ_P0036044 protein_coding protein_coding MGP_CASTEiJ_T0037745.1 MGP_CASTEiJ_G0020162.1 mouse_genomes_project 13 104372934 104394604 + MGP_CASTEiJ_P0037745 Sgtb protein_coding protein_coding MGP_CASTEiJ_T0037746.1 MGP_CASTEiJ_G0020162.1 mouse_genomes_project 13 104372940 104403271 + MGP_CASTEiJ_P0037746 Sgtb protein_coding protein_coding MGP_CASTEiJ_T0036255.1 MGP_CASTEiJ_G0019666.1 mouse_genomes_project 13 24538321 24548965 + MGP_CASTEiJ_P0036255 Prl8a2 protein_coding protein_coding MGP_CASTEiJ_T0036256.1 MGP_CASTEiJ_G0019666.1 mouse_genomes_project 13 24538327 24548953 + MGP_CASTEiJ_P0036256 Prl8a2 protein_coding protein_coding MGP_CASTEiJ_T0037590.1 MGP_CASTEiJ_G0020118.1 mouse_genomes_project 13 96850207 96919253 + MGP_CASTEiJ_P0037590 Fam169a protein_coding protein_coding MGP_CASTEiJ_T0037591.1 MGP_CASTEiJ_G0020118.1 mouse_genomes_project 13 96855584 96919253 + MGP_CASTEiJ_P0037591 Fam169a protein_coding protein_coding MGP_CASTEiJ_T0035953.1 MGP_CASTEiJ_G0019517.1 mouse_genomes_project 13 10230758 10230986 + MGP_CASTEiJ_P0035953 Gm2399 protein_coding protein_coding MGP_CASTEiJ_T0011023.1 MGP_CASTEiJ_G0009211.1 mouse_genomes_project 13 53271952 53272212 - Gm22668 misc_RNA misc_RNA MGP_CASTEiJ_T0102059.1 MGP_CASTEiJ_G0038784.1 mouse_genomes_project 13 30534786 30534944 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0037386.1 MGP_CASTEiJ_G0020057.1 mouse_genomes_project 13 84371292 84398645 + MGP_CASTEiJ_P0037386 Ccnh protein_coding protein_coding MGP_CASTEiJ_T0037387.1 MGP_CASTEiJ_G0020057.1 mouse_genomes_project 13 84371319 84387609 + MGP_CASTEiJ_P0037387 Ccnh protein_coding protein_coding MGP_CASTEiJ_T0037388.1 MGP_CASTEiJ_G0020057.1 mouse_genomes_project 13 84371332 84397654 + MGP_CASTEiJ_P0037388 Ccnh protein_coding protein_coding MGP_CASTEiJ_T0037389.1 MGP_CASTEiJ_G0020057.1 mouse_genomes_project 13 84371348 84397863 + MGP_CASTEiJ_P0037389 Ccnh protein_coding unknown_likely_coding MGP_CASTEiJ_T0037390.1 MGP_CASTEiJ_G0020057.1 mouse_genomes_project 13 84371361 84397960 + MGP_CASTEiJ_P0037390 Ccnh protein_coding protein_coding MGP_CASTEiJ_T0037391.1 MGP_CASTEiJ_G0020057.1 mouse_genomes_project 13 84387596 84409563 + MGP_CASTEiJ_P0037391 Ccnh protein_coding protein_coding MGP_CASTEiJ_T0037392.1 MGP_CASTEiJ_G0020057.1 mouse_genomes_project 13 84396363 84398159 + Ccnh protein_coding processed_transcript MGP_CASTEiJ_T0037393.1 MGP_CASTEiJ_G0020057.1 mouse_genomes_project 13 84396825 84397955 + Ccnh protein_coding retained_intron MGP_CASTEiJ_T0037773.1 MGP_CASTEiJ_G0020173.1 mouse_genomes_project 13 105488673 105653006 - MGP_CASTEiJ_P0037773 Rnf180 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037774.1 MGP_CASTEiJ_G0020173.1 mouse_genomes_project 13 105506521 105653006 - MGP_CASTEiJ_P0037774 Rnf180 protein_coding protein_coding MGP_CASTEiJ_T0009692.1 MGP_CASTEiJ_G0007880.1 mouse_genomes_project 13 68026789 68028151 - miRNA miRNA MGP_CASTEiJ_T0037705.1 MGP_CASTEiJ_G0020156.1 mouse_genomes_project 13 101877003 101968043 - MGP_CASTEiJ_P0037705 Pik3r1 protein_coding protein_coding MGP_CASTEiJ_T0037706.1 MGP_CASTEiJ_G0020156.1 mouse_genomes_project 13 101880104 101888926 - MGP_CASTEiJ_P0037706 Pik3r1 protein_coding protein_coding MGP_CASTEiJ_T0037707.1 MGP_CASTEiJ_G0020156.1 mouse_genomes_project 13 101884025 101888872 - MGP_CASTEiJ_P0037707 Pik3r1 protein_coding protein_coding MGP_CASTEiJ_T0037708.1 MGP_CASTEiJ_G0020156.1 mouse_genomes_project 13 101885479 101890901 - MGP_CASTEiJ_P0037708 Pik3r1 protein_coding protein_coding MGP_CASTEiJ_T0037709.1 MGP_CASTEiJ_G0020156.1 mouse_genomes_project 13 101886414 101888640 - Pik3r1 protein_coding retained_intron MGP_CASTEiJ_T0037710.1 MGP_CASTEiJ_G0020156.1 mouse_genomes_project 13 101899153 101899810 - Pik3r1 protein_coding retained_intron MGP_CASTEiJ_T0037711.1 MGP_CASTEiJ_G0020156.1 mouse_genomes_project 13 101954567 101968039 - Pik3r1 protein_coding retained_intron MGP_CASTEiJ_T0099348.1 MGP_CASTEiJ_G0036261.1 mouse_genomes_project 13 41414869 41414978 - Gm26064 snRNA snRNA MGP_CASTEiJ_T0036262.1 MGP_CASTEiJ_G0019669.1 mouse_genomes_project 13 24708946 24718031 - MGP_CASTEiJ_P0036262 Prl8a8 protein_coding protein_coding MGP_CASTEiJ_T0036263.1 MGP_CASTEiJ_G0019669.1 mouse_genomes_project 13 24709049 24718029 - MGP_CASTEiJ_P0036263 Prl8a8 protein_coding protein_coding MGP_CASTEiJ_T0036437.1 MGP_CASTEiJ_G0019739.1 mouse_genomes_project 13 36392170 36402824 - MGP_CASTEiJ_P0036437 Eef1e1 protein_coding protein_coding MGP_CASTEiJ_T0036768.1 MGP_CASTEiJ_G0019842.1 mouse_genomes_project 13 53633428 53641504 - MGP_CASTEiJ_P0036768 Sncb protein_coding protein_coding MGP_CASTEiJ_T0036769.1 MGP_CASTEiJ_G0019842.1 mouse_genomes_project 13 53633951 53641006 - MGP_CASTEiJ_P0036769 Sncb protein_coding protein_coding MGP_CASTEiJ_T0036770.1 MGP_CASTEiJ_G0019842.1 mouse_genomes_project 13 53633998 53637638 - Sncb protein_coding retained_intron MGP_CASTEiJ_T0036771.1 MGP_CASTEiJ_G0019842.1 mouse_genomes_project 13 53639637 53641401 - Sncb protein_coding retained_intron MGP_CASTEiJ_T0036034.1 MGP_CASTEiJ_G0019546.1 mouse_genomes_project 13 17815510 18044687 + MGP_CASTEiJ_P0036034 Aoah protein_coding protein_coding MGP_CASTEiJ_T0009687.1 MGP_CASTEiJ_G0007875.1 mouse_genomes_project 13 61976917 61977000 + Gm24588 miRNA miRNA MGP_CASTEiJ_T0036423.1 MGP_CASTEiJ_G0019733.1 mouse_genomes_project 13 35733756 35762984 + MGP_CASTEiJ_P0036423 Riok1 protein_coding protein_coding MGP_CASTEiJ_T0035928.1 MGP_CASTEiJ_G0019507.1 mouse_genomes_project 13 6406113 6917241 - MGP_CASTEiJ_P0035928 Chrm3 protein_coding protein_coding MGP_CASTEiJ_T0035929.1 MGP_CASTEiJ_G0019507.1 mouse_genomes_project 13 6407856 6409626 - MGP_CASTEiJ_P0035929 Chrm3 protein_coding protein_coding MGP_CASTEiJ_T0035930.1 MGP_CASTEiJ_G0019507.1 mouse_genomes_project 13 6766746 6916959 - Chrm3 protein_coding processed_transcript MGP_CASTEiJ_T0100583.1 MGP_CASTEiJ_G0037496.1 mouse_genomes_project 13 76638574 76638714 + Gm26088 snoRNA snoRNA MGP_CASTEiJ_T0009664.1 MGP_CASTEiJ_G0007852.1 mouse_genomes_project 13 18986840 18986972 - Mir1983 miRNA miRNA MGP_CASTEiJ_T0037511.1 MGP_CASTEiJ_G0020090.1 mouse_genomes_project 13 93224700 93242740 - MGP_CASTEiJ_P0037511 Bhmt2 protein_coding protein_coding MGP_CASTEiJ_T0036286.1 MGP_CASTEiJ_G0019681.1 mouse_genomes_project 13 27282416 27362756 - MGP_CASTEiJ_P0036286 E2f3 protein_coding protein_coding MGP_CASTEiJ_T0036287.1 MGP_CASTEiJ_G0019681.1 mouse_genomes_project 13 27294689 27361310 - MGP_CASTEiJ_P0036287 E2f3 protein_coding protein_coding MGP_CASTEiJ_T0035947.1 MGP_CASTEiJ_G0019513.1 mouse_genomes_project 13 9100935 9154094 - MGP_CASTEiJ_P0035947 Edaradd protein_coding protein_coding MGP_CASTEiJ_T0037514.1 MGP_CASTEiJ_G0020092.1 mouse_genomes_project 13 93344379 93526079 + MGP_CASTEiJ_P0037514 Arsb protein_coding protein_coding MGP_CASTEiJ_T0098831.1 MGP_CASTEiJ_G0035758.1 mouse_genomes_project 13 26606076 26606921 - Gm11364 sense_intronic sense_intronic MGP_CASTEiJ_T0036112.1 MGP_CASTEiJ_G0019590.1 mouse_genomes_project 13 19293018 19293921 - MGP_CASTEiJ_P0036112 Vmn1r192 protein_coding protein_coding MGP_CASTEiJ_T0100586.1 MGP_CASTEiJ_G0037499.1 mouse_genomes_project 13 85256170 85256230 - Gm22574 snoRNA snoRNA MGP_CASTEiJ_T0036836.1 MGP_CASTEiJ_G0019858.1 mouse_genomes_project 13 54336529 54336943 - MGP_CASTEiJ_P0036836 Pfn3 protein_coding protein_coding MGP_CASTEiJ_T0100555.1 MGP_CASTEiJ_G0037468.1 mouse_genomes_project 13 7982017 7982137 - Gm25496 snoRNA snoRNA MGP_CASTEiJ_T0000836.1 MGP_CASTEiJ_G0000776.1 mouse_genomes_project 13 35154372 35154713 - TEC TEC MGP_CASTEiJ_T0035997.1 MGP_CASTEiJ_G0019533.1 mouse_genomes_project 13 14588788 14689099 - MGP_CASTEiJ_P0035997 Cdk13 protein_coding protein_coding MGP_CASTEiJ_T0035998.1 MGP_CASTEiJ_G0019533.1 mouse_genomes_project 13 14590920 14689335 - MGP_CASTEiJ_P0035998 Cdk13 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035999.1 MGP_CASTEiJ_G0019533.1 mouse_genomes_project 13 14611389 14688811 - MGP_CASTEiJ_P0035999 Cdk13 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036155.1 MGP_CASTEiJ_G0019627.1 mouse_genomes_project 13 20752136 20753410 - MGP_CASTEiJ_P0036155 Hist1h4c protein_coding protein_coding MGP_CASTEiJ_T0099349.1 MGP_CASTEiJ_G0036262.1 mouse_genomes_project 13 41890987 41891095 + Gm23117 snRNA snRNA MGP_CASTEiJ_T0036143.1 MGP_CASTEiJ_G0019617.1 mouse_genomes_project 13 20523848 20535290 - MGP_CASTEiJ_P0036143 Btn2a2 protein_coding protein_coding MGP_CASTEiJ_T0098501.1 MGP_CASTEiJ_G0035432.1 mouse_genomes_project 13 117718453 117718544 + Gm23198 rRNA rRNA MGP_CASTEiJ_T0009699.1 MGP_CASTEiJ_G0007887.1 mouse_genomes_project 13 94137382 94137496 + Gm25109 miRNA miRNA MGP_CASTEiJ_T0036366.1 MGP_CASTEiJ_G0019715.1 mouse_genomes_project 13 32101772 32152213 - MGP_CASTEiJ_P0036366 Pxdc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036367.1 MGP_CASTEiJ_G0019715.1 mouse_genomes_project 13 32127829 32152444 - MGP_CASTEiJ_P0036367 Pxdc1 protein_coding protein_coding MGP_CASTEiJ_T0036368.1 MGP_CASTEiJ_G0019715.1 mouse_genomes_project 13 32127829 32152454 - MGP_CASTEiJ_P0036368 Pxdc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036369.1 MGP_CASTEiJ_G0019715.1 mouse_genomes_project 13 32127830 32152454 - MGP_CASTEiJ_P0036369 Pxdc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036370.1 MGP_CASTEiJ_G0019715.1 mouse_genomes_project 13 32128857 32148346 - MGP_CASTEiJ_P0036370 Pxdc1 protein_coding protein_coding MGP_CASTEiJ_T0037512.1 MGP_CASTEiJ_G0020091.1 mouse_genomes_project 13 93242870 93323386 + MGP_CASTEiJ_P0037512 Dmgdh protein_coding protein_coding MGP_CASTEiJ_T0037513.1 MGP_CASTEiJ_G0020091.1 mouse_genomes_project 13 93280296 93280917 + Dmgdh protein_coding processed_transcript MGP_CASTEiJ_T0102044.1 MGP_CASTEiJ_G0038769.1 mouse_genomes_project 13 19896925 19897217 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0037609.1 MGP_CASTEiJ_G0020124.1 mouse_genomes_project 13 98182867 98199900 - MGP_CASTEiJ_P0037609 Utp15 protein_coding protein_coding MGP_CASTEiJ_T0012543.1 MGP_CASTEiJ_G0010706.1 mouse_genomes_project 13 27574482 27575063 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098497.1 MGP_CASTEiJ_G0035428.1 mouse_genomes_project 13 51680577 51680689 - n-R5s54 rRNA rRNA MGP_CASTEiJ_T0036716.1 MGP_CASTEiJ_G0019832.1 mouse_genomes_project 13 53352170 53406076 + MGP_CASTEiJ_P0036716 Simc1 protein_coding protein_coding MGP_CASTEiJ_T0036717.1 MGP_CASTEiJ_G0019832.1 mouse_genomes_project 13 53352170 53406076 + MGP_CASTEiJ_P0036717 Simc1 protein_coding protein_coding MGP_CASTEiJ_T0036718.1 MGP_CASTEiJ_G0019832.1 mouse_genomes_project 13 53352195 53396395 + MGP_CASTEiJ_P0036718 Simc1 protein_coding protein_coding MGP_CASTEiJ_T0036719.1 MGP_CASTEiJ_G0019832.1 mouse_genomes_project 13 53352200 53396394 + MGP_CASTEiJ_P0036719 Simc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036720.1 MGP_CASTEiJ_G0019832.1 mouse_genomes_project 13 53352238 53405674 + MGP_CASTEiJ_P0036720 Simc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036721.1 MGP_CASTEiJ_G0019832.1 mouse_genomes_project 13 53365700 53380326 + Simc1 protein_coding processed_transcript MGP_CASTEiJ_T0036722.1 MGP_CASTEiJ_G0019832.1 mouse_genomes_project 13 53384998 53396511 + Simc1 protein_coding retained_intron MGP_CASTEiJ_T0036723.1 MGP_CASTEiJ_G0019832.1 mouse_genomes_project 13 53401639 53405572 + Simc1 protein_coding retained_intron MGP_CASTEiJ_T0037255.1 MGP_CASTEiJ_G0020023.1 mouse_genomes_project 13 72966571 73012778 + MGP_CASTEiJ_P0037255 Slc9a3 protein_coding protein_coding MGP_CASTEiJ_T0037256.1 MGP_CASTEiJ_G0020023.1 mouse_genomes_project 13 72966571 73013528 + MGP_CASTEiJ_P0037256 Slc9a3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036222.1 MGP_CASTEiJ_G0019650.1 mouse_genomes_project 13 21944858 21957803 + MGP_CASTEiJ_P0036222 Tdp2 protein_coding protein_coding MGP_CASTEiJ_T0036223.1 MGP_CASTEiJ_G0019650.1 mouse_genomes_project 13 21945001 21953728 + Tdp2 protein_coding processed_transcript MGP_CASTEiJ_T0037129.1 MGP_CASTEiJ_G0019962.1 mouse_genomes_project 13 65734076 65751481 - MGP_CASTEiJ_P0037129 Rslcan18 protein_coding protein_coding MGP_CASTEiJ_T0037131.1 MGP_CASTEiJ_G0019962.1 mouse_genomes_project 13 65748449 65753799 - Rslcan18 protein_coding retained_intron MGP_CASTEiJ_T0006390.1 MGP_CASTEiJ_G0005315.1 mouse_genomes_project 13 44138979 44140235 + 5033430I15Rik lincRNA lincRNA MGP_CASTEiJ_T0006391.1 MGP_CASTEiJ_G0005315.1 mouse_genomes_project 13 44139077 44139904 + 5033430I15Rik lincRNA lincRNA MGP_CASTEiJ_T0036197.1 MGP_CASTEiJ_G0019645.1 mouse_genomes_project 13 21465394 21564415 + MGP_CASTEiJ_P0036197 Cmah protein_coding protein_coding MGP_CASTEiJ_T0036198.1 MGP_CASTEiJ_G0019645.1 mouse_genomes_project 13 21485970 21528153 + Cmah protein_coding processed_transcript MGP_CASTEiJ_T0036199.1 MGP_CASTEiJ_G0019645.1 mouse_genomes_project 13 21504873 21527712 + Cmah protein_coding processed_transcript MGP_CASTEiJ_T0036200.1 MGP_CASTEiJ_G0019645.1 mouse_genomes_project 13 21505196 21529141 + Cmah protein_coding processed_transcript MGP_CASTEiJ_T0003317.1 MGP_CASTEiJ_G0003054.1 mouse_genomes_project 13 12306727 12308043 - Gm26645 antisense antisense MGP_CASTEiJ_T0006349.1 MGP_CASTEiJ_G0005286.1 mouse_genomes_project 13 21736180 21742802 - C530050E15Rik lincRNA lincRNA MGP_CASTEiJ_T0016621.1 MGP_CASTEiJ_G0014573.1 mouse_genomes_project 13 89149446 89258580 + Gm4117 processed_transcript processed_transcript MGP_CASTEiJ_T0016622.1 MGP_CASTEiJ_G0014573.1 mouse_genomes_project 13 89149450 89302184 + Gm4117 processed_transcript processed_transcript MGP_CASTEiJ_T0000837.1 MGP_CASTEiJ_G0000777.1 mouse_genomes_project 13 35854718 35856049 - TEC TEC MGP_CASTEiJ_T0000838.1 MGP_CASTEiJ_G0000777.1 mouse_genomes_project 13 35855689 35856049 - TEC TEC MGP_CASTEiJ_T0036294.1 MGP_CASTEiJ_G0019685.1 mouse_genomes_project 13 28073485 28124339 + MGP_CASTEiJ_P0036294 Dusp22 protein_coding protein_coding MGP_CASTEiJ_T0036295.1 MGP_CASTEiJ_G0019685.1 mouse_genomes_project 13 28073547 28119232 + MGP_CASTEiJ_P0036295 Dusp22 protein_coding protein_coding MGP_CASTEiJ_T0036296.1 MGP_CASTEiJ_G0019685.1 mouse_genomes_project 13 28073596 28122005 + MGP_CASTEiJ_P0036296 Dusp22 protein_coding protein_coding MGP_CASTEiJ_T0036014.1 MGP_CASTEiJ_G0019539.1 mouse_genomes_project 13 16332285 16342041 - Stard3nl protein_coding retained_intron MGP_CASTEiJ_T0036015.1 MGP_CASTEiJ_G0019539.1 mouse_genomes_project 13 16332288 16334239 - Stard3nl protein_coding retained_intron MGP_CASTEiJ_T0036016.1 MGP_CASTEiJ_G0019539.1 mouse_genomes_project 13 16332288 16369748 - MGP_CASTEiJ_P0036016 Stard3nl protein_coding protein_coding MGP_CASTEiJ_T0036017.1 MGP_CASTEiJ_G0019539.1 mouse_genomes_project 13 16333114 16344460 - Stard3nl protein_coding retained_intron MGP_CASTEiJ_T0036018.1 MGP_CASTEiJ_G0019539.1 mouse_genomes_project 13 16338927 16369735 - MGP_CASTEiJ_P0036018 Stard3nl protein_coding protein_coding MGP_CASTEiJ_T0036019.1 MGP_CASTEiJ_G0019539.1 mouse_genomes_project 13 16343500 16369796 - Stard3nl protein_coding retained_intron MGP_CASTEiJ_T0036020.1 MGP_CASTEiJ_G0019539.1 mouse_genomes_project 13 16344415 16350799 - Stard3nl protein_coding retained_intron MGP_CASTEiJ_T0036021.1 MGP_CASTEiJ_G0019539.1 mouse_genomes_project 13 16350725 16369760 - MGP_CASTEiJ_P0036021 Stard3nl protein_coding protein_coding MGP_CASTEiJ_T0009695.1 MGP_CASTEiJ_G0007883.1 mouse_genomes_project 13 82856447 82856519 + Mir9-2 miRNA miRNA MGP_CASTEiJ_T0036330.1 MGP_CASTEiJ_G0019705.1 mouse_genomes_project 13 31199537 31209836 + MGP_CASTEiJ_P0036330 Serpinb6d protein_coding protein_coding MGP_CASTEiJ_T0003326.1 MGP_CASTEiJ_G0003062.1 mouse_genomes_project 13 21027471 21038611 + Gm11339 antisense antisense MGP_CASTEiJ_T0037349.1 MGP_CASTEiJ_G0020052.1 mouse_genomes_project 13 80763426 80800208 - MGP_CASTEiJ_P0037349 Polr3g protein_coding protein_coding MGP_CASTEiJ_T0037350.1 MGP_CASTEiJ_G0020052.1 mouse_genomes_project 13 80763463 80776869 - Polr3g protein_coding retained_intron MGP_CASTEiJ_T0037351.1 MGP_CASTEiJ_G0020052.1 mouse_genomes_project 13 80783295 80800151 - MGP_CASTEiJ_P0037351 Polr3g protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037352.1 MGP_CASTEiJ_G0020052.1 mouse_genomes_project 13 80783725 80800140 - MGP_CASTEiJ_P0037352 Polr3g protein_coding protein_coding MGP_CASTEiJ_T0037353.1 MGP_CASTEiJ_G0020052.1 mouse_genomes_project 13 80788426 80800197 - Polr3g protein_coding retained_intron MGP_CASTEiJ_T0098334.1 MGP_CASTEiJ_G0035265.1 mouse_genomes_project 13 26168487 26168727 + pseudogene pseudogene MGP_CASTEiJ_T0037934.1 MGP_CASTEiJ_G0020225.1 mouse_genomes_project 13 119557714 119559219 + MGP_CASTEiJ_P0037934 B430218F22Rik protein_coding protein_coding MGP_CASTEiJ_T0012552.1 MGP_CASTEiJ_G0010715.1 mouse_genomes_project 13 32460122 32461108 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036052.1 MGP_CASTEiJ_G0019556.1 mouse_genomes_project 13 18445780 18461343 - MGP_CASTEiJ_P0036052 Zkscan3 protein_coding protein_coding MGP_CASTEiJ_T0036053.1 MGP_CASTEiJ_G0019556.1 mouse_genomes_project 13 18445780 18461301 - MGP_CASTEiJ_P0036053 Zkscan3 protein_coding protein_coding MGP_CASTEiJ_T0036054.1 MGP_CASTEiJ_G0019556.1 mouse_genomes_project 13 18447362 18453352 - MGP_CASTEiJ_P0036054 Zkscan3 protein_coding protein_coding MGP_CASTEiJ_T0036055.1 MGP_CASTEiJ_G0019556.1 mouse_genomes_project 13 18448050 18461283 - MGP_CASTEiJ_P0036055 Zkscan3 protein_coding protein_coding MGP_CASTEiJ_T0036056.1 MGP_CASTEiJ_G0019556.1 mouse_genomes_project 13 18451820 18461304 - MGP_CASTEiJ_P0036056 Zkscan3 protein_coding protein_coding MGP_CASTEiJ_T0036057.1 MGP_CASTEiJ_G0019556.1 mouse_genomes_project 13 18460146 18461258 - Zkscan3 protein_coding processed_transcript MGP_CASTEiJ_T0036652.1 MGP_CASTEiJ_G0019811.1 mouse_genomes_project 13 49747432 49752995 + MGP_CASTEiJ_P0036652 Nxnl2 protein_coding protein_coding MGP_CASTEiJ_T0037151.1 MGP_CASTEiJ_G0019975.1 mouse_genomes_project 13 66149976 66173359 - MGP_CASTEiJ_P0037151 Zfp459 protein_coding protein_coding MGP_CASTEiJ_T0037929.1 MGP_CASTEiJ_G0020221.1 mouse_genomes_project 13 118301788 118305655 - MGP_CASTEiJ_P0037929 Gm17509 protein_coding protein_coding MGP_CASTEiJ_T0037610.1 MGP_CASTEiJ_G0020125.1 mouse_genomes_project 13 98200039 98211172 + MGP_CASTEiJ_P0037610 Ankra2 protein_coding protein_coding MGP_CASTEiJ_T0037611.1 MGP_CASTEiJ_G0020125.1 mouse_genomes_project 13 98200098 98211655 + MGP_CASTEiJ_P0037611 Ankra2 protein_coding protein_coding MGP_CASTEiJ_T0037612.1 MGP_CASTEiJ_G0020125.1 mouse_genomes_project 13 98200101 98211657 + MGP_CASTEiJ_P0037612 Ankra2 protein_coding protein_coding MGP_CASTEiJ_T0037613.1 MGP_CASTEiJ_G0020125.1 mouse_genomes_project 13 98200166 98212489 + MGP_CASTEiJ_P0037613 Ankra2 protein_coding protein_coding MGP_CASTEiJ_T0037614.1 MGP_CASTEiJ_G0020125.1 mouse_genomes_project 13 98206194 98209176 + Ankra2 protein_coding retained_intron MGP_CASTEiJ_T0009702.1 MGP_CASTEiJ_G0007890.1 mouse_genomes_project 13 109839420 109839501 + Mir582 miRNA miRNA MGP_CASTEiJ_T0006444.1 MGP_CASTEiJ_G0005350.1 mouse_genomes_project 13 95850300 95851267 + Gm29543 lincRNA lincRNA MGP_CASTEiJ_T0011024.1 MGP_CASTEiJ_G0009212.1 mouse_genomes_project 13 55715409 55715662 + Gm27698 misc_RNA misc_RNA MGP_CASTEiJ_T0037938.1 MGP_CASTEiJ_G0020227.1 mouse_genomes_project 13 120527695 120618603 - MGP_CASTEiJ_P0037938 Nnt protein_coding protein_coding MGP_CASTEiJ_T0037939.1 MGP_CASTEiJ_G0020227.1 mouse_genomes_project 13 120527695 120618603 - MGP_CASTEiJ_P0037939 Nnt protein_coding protein_coding MGP_CASTEiJ_T0037940.1 MGP_CASTEiJ_G0020227.1 mouse_genomes_project 13 120528421 120640878 - MGP_CASTEiJ_P0037940 Nnt protein_coding unknown_likely_coding MGP_CASTEiJ_T0037941.1 MGP_CASTEiJ_G0020227.1 mouse_genomes_project 13 120528500 120618641 - MGP_CASTEiJ_P0037941 Nnt protein_coding unknown_likely_coding MGP_CASTEiJ_T0037942.1 MGP_CASTEiJ_G0020227.1 mouse_genomes_project 13 120543427 120618603 - MGP_CASTEiJ_P0037942 Nnt protein_coding protein_coding MGP_CASTEiJ_T0037943.1 MGP_CASTEiJ_G0020227.1 mouse_genomes_project 13 120596083 120618603 - Nnt protein_coding processed_transcript MGP_CASTEiJ_T0037944.1 MGP_CASTEiJ_G0020227.1 mouse_genomes_project 13 120601810 120618603 - Nnt protein_coding processed_transcript MGP_CASTEiJ_T0036739.1 MGP_CASTEiJ_G0019836.1 mouse_genomes_project 13 53448611 53449556 + MGP_CASTEiJ_P0036739 Higd2a protein_coding protein_coding MGP_CASTEiJ_T0037619.1 MGP_CASTEiJ_G0020127.1 mouse_genomes_project 13 98248627 98255719 - MGP_CASTEiJ_P0037619 Btf3 protein_coding protein_coding MGP_CASTEiJ_T0037620.1 MGP_CASTEiJ_G0020127.1 mouse_genomes_project 13 98248628 98255758 - MGP_CASTEiJ_P0037620 Btf3 protein_coding protein_coding MGP_CASTEiJ_T0037621.1 MGP_CASTEiJ_G0020127.1 mouse_genomes_project 13 98248629 98250244 - Btf3 protein_coding retained_intron MGP_CASTEiJ_T0037622.1 MGP_CASTEiJ_G0020127.1 mouse_genomes_project 13 98248673 98255128 - MGP_CASTEiJ_P0037622 Btf3 protein_coding protein_coding MGP_CASTEiJ_T0037623.1 MGP_CASTEiJ_G0020127.1 mouse_genomes_project 13 98251776 98255748 - Btf3 protein_coding retained_intron MGP_CASTEiJ_T0000841.1 MGP_CASTEiJ_G0000780.1 mouse_genomes_project 13 39757911 39758376 + TEC TEC MGP_CASTEiJ_T0012521.1 MGP_CASTEiJ_G0010684.1 mouse_genomes_project 13 19572128 19575692 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006471.1 MGP_CASTEiJ_G0005371.1 mouse_genomes_project 13 115457306 115553079 + 4930544M13Rik lincRNA lincRNA MGP_CASTEiJ_T0006472.1 MGP_CASTEiJ_G0005371.1 mouse_genomes_project 13 115457306 115513037 + 4930544M13Rik lincRNA lincRNA MGP_CASTEiJ_T0036706.1 MGP_CASTEiJ_G0019825.1 mouse_genomes_project 13 52221318 52227509 - MGP_CASTEiJ_P0036706 Msx2 protein_coding protein_coding MGP_CASTEiJ_T0036707.1 MGP_CASTEiJ_G0019825.1 mouse_genomes_project 13 52225940 52227509 - Msx2 protein_coding retained_intron MGP_CASTEiJ_T0036825.1 MGP_CASTEiJ_G0019852.1 mouse_genomes_project 13 54228101 54230877 - MGP_CASTEiJ_P0036825 Rab24 protein_coding protein_coding MGP_CASTEiJ_T0036826.1 MGP_CASTEiJ_G0019852.1 mouse_genomes_project 13 54228755 54230752 - MGP_CASTEiJ_P0036826 Rab24 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036467.1 MGP_CASTEiJ_G0019752.1 mouse_genomes_project 13 39136395 39136570 - MGP_CASTEiJ_P0036467 Gm17364 protein_coding protein_coding MGP_CASTEiJ_T0036553.1 MGP_CASTEiJ_G0019782.1 mouse_genomes_project 13 45251726 45268963 - MGP_CASTEiJ_P0036553 Tpmt protein_coding protein_coding MGP_CASTEiJ_T0036554.1 MGP_CASTEiJ_G0019782.1 mouse_genomes_project 13 45251735 45268877 - MGP_CASTEiJ_P0036554 Tpmt protein_coding protein_coding MGP_CASTEiJ_T0036555.1 MGP_CASTEiJ_G0019782.1 mouse_genomes_project 13 45251924 45270396 - MGP_CASTEiJ_P0036555 Tpmt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036556.1 MGP_CASTEiJ_G0019782.1 mouse_genomes_project 13 45254947 45269096 - MGP_CASTEiJ_P0036556 Tpmt protein_coding protein_coding MGP_CASTEiJ_T0036557.1 MGP_CASTEiJ_G0019782.1 mouse_genomes_project 13 45254966 45270469 - MGP_CASTEiJ_P0036557 Tpmt protein_coding protein_coding MGP_CASTEiJ_T0036558.1 MGP_CASTEiJ_G0019782.1 mouse_genomes_project 13 45265448 45268897 - Tpmt protein_coding retained_intron MGP_CASTEiJ_T0036559.1 MGP_CASTEiJ_G0019782.1 mouse_genomes_project 13 45265864 45268891 - MGP_CASTEiJ_P0036559 Tpmt protein_coding protein_coding MGP_CASTEiJ_T0037024.1 MGP_CASTEiJ_G0019922.1 mouse_genomes_project 13 60438398 60443346 - MGP_CASTEiJ_P0037024 Ctsr protein_coding protein_coding MGP_CASTEiJ_T0036898.1 MGP_CASTEiJ_G0019881.1 mouse_genomes_project 13 55434896 55472101 + MGP_CASTEiJ_P0036898 Slc25a48 protein_coding protein_coding MGP_CASTEiJ_T0037882.1 MGP_CASTEiJ_G0020204.1 mouse_genomes_project 13 113797740 113800957 + MGP_CASTEiJ_P0037882 Cdc20b protein_coding protein_coding MGP_CASTEiJ_T0037883.1 MGP_CASTEiJ_G0020204.1 mouse_genomes_project 13 113798009 113859482 + MGP_CASTEiJ_P0037883 Cdc20b protein_coding protein_coding MGP_CASTEiJ_T0037884.1 MGP_CASTEiJ_G0020204.1 mouse_genomes_project 13 113798009 113859482 + MGP_CASTEiJ_P0037884 Cdc20b protein_coding protein_coding MGP_CASTEiJ_T0037885.1 MGP_CASTEiJ_G0020204.1 mouse_genomes_project 13 113798009 113859482 + MGP_CASTEiJ_P0037885 Cdc20b protein_coding protein_coding MGP_CASTEiJ_T0037886.1 MGP_CASTEiJ_G0020204.1 mouse_genomes_project 13 113798017 113800957 + MGP_CASTEiJ_P0037886 Cdc20b protein_coding protein_coding MGP_CASTEiJ_T0016601.1 MGP_CASTEiJ_G0014561.1 mouse_genomes_project 13 19119697 19126344 + Gm11292 processed_transcript processed_transcript MGP_CASTEiJ_T0036436.1 MGP_CASTEiJ_G0019738.1 mouse_genomes_project 13 36347897 36382525 - MGP_CASTEiJ_P0036436 Bloc1s5 protein_coding protein_coding MGP_CASTEiJ_T0037557.1 MGP_CASTEiJ_G0020107.1 mouse_genomes_project 13 95316370 95596185 - MGP_CASTEiJ_P0037557 Iqgap2 protein_coding protein_coding MGP_CASTEiJ_T0006427.1 MGP_CASTEiJ_G0005339.1 mouse_genomes_project 13 78988493 79174059 - lincRNA lincRNA MGP_CASTEiJ_T0012513.1 MGP_CASTEiJ_G0010676.1 mouse_genomes_project 13 17725384 17726384 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009689.1 MGP_CASTEiJ_G0007877.1 mouse_genomes_project 13 62536308 62536381 + Mir27b miRNA miRNA MGP_CASTEiJ_T0012584.1 MGP_CASTEiJ_G0010747.1 mouse_genomes_project 13 87761829 87762300 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036466.1 MGP_CASTEiJ_G0019751.1 mouse_genomes_project 13 39115131 39138749 + MGP_CASTEiJ_P0036466 Smim13 protein_coding protein_coding MGP_CASTEiJ_T0036030.1 MGP_CASTEiJ_G0019545.1 mouse_genomes_project 13 17111527 17292338 + Elmo1 protein_coding retained_intron MGP_CASTEiJ_T0036031.1 MGP_CASTEiJ_G0019545.1 mouse_genomes_project 13 17111550 17638420 + MGP_CASTEiJ_P0036031 Elmo1 protein_coding protein_coding MGP_CASTEiJ_T0036032.1 MGP_CASTEiJ_G0019545.1 mouse_genomes_project 13 17135244 17376708 + Elmo1 protein_coding retained_intron MGP_CASTEiJ_T0036033.1 MGP_CASTEiJ_G0019545.1 mouse_genomes_project 13 17506877 17624689 + Elmo1 protein_coding retained_intron MGP_CASTEiJ_T0002509.1 MGP_CASTEiJ_G0002418.1 mouse_genomes_project 13 16130376 16130844 + MGP_CASTEiJ_P0002509 Tcrg-V7 TR_V_gene TR_V_gene MGP_CASTEiJ_T0000862.1 MGP_CASTEiJ_G0000801.1 mouse_genomes_project 13 101951779 101952179 - TEC TEC MGP_CASTEiJ_T0003340.1 MGP_CASTEiJ_G0003074.1 mouse_genomes_project 13 53050518 53054108 - Gm16578 antisense antisense MGP_CASTEiJ_T0036080.1 MGP_CASTEiJ_G0019569.1 mouse_genomes_project 13 18725853 18726807 - MGP_CASTEiJ_P0036080 Olfr1361 protein_coding protein_coding MGP_CASTEiJ_T0036930.1 MGP_CASTEiJ_G0019890.1 mouse_genomes_project 13 57200771 57203443 - MGP_CASTEiJ_P0036930 Hnrnpa0 protein_coding protein_coding MGP_CASTEiJ_T0037754.1 MGP_CASTEiJ_G0020165.1 mouse_genomes_project 13 104445449 104472906 + MGP_CASTEiJ_P0037754 Trim23 protein_coding protein_coding MGP_CASTEiJ_T0037755.1 MGP_CASTEiJ_G0020165.1 mouse_genomes_project 13 104445491 104473261 + MGP_CASTEiJ_P0037755 Trim23 protein_coding protein_coding MGP_CASTEiJ_T0037756.1 MGP_CASTEiJ_G0020165.1 mouse_genomes_project 13 104445513 104456354 + MGP_CASTEiJ_P0037756 Trim23 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037757.1 MGP_CASTEiJ_G0020165.1 mouse_genomes_project 13 104445750 104470801 + MGP_CASTEiJ_P0037757 Trim23 protein_coding protein_coding MGP_CASTEiJ_T0037576.1 MGP_CASTEiJ_G0020115.1 mouse_genomes_project 13 96407057 96429185 - MGP_CASTEiJ_P0037576 Hmgcr protein_coding protein_coding MGP_CASTEiJ_T0037577.1 MGP_CASTEiJ_G0020115.1 mouse_genomes_project 13 96408364 96424917 - MGP_CASTEiJ_P0037577 Hmgcr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037578.1 MGP_CASTEiJ_G0020115.1 mouse_genomes_project 13 96408531 96410894 - MGP_CASTEiJ_P0037578 Hmgcr protein_coding protein_coding MGP_CASTEiJ_T0037579.1 MGP_CASTEiJ_G0020115.1 mouse_genomes_project 13 96409436 96424869 - MGP_CASTEiJ_P0037579 Hmgcr protein_coding protein_coding MGP_CASTEiJ_T0037580.1 MGP_CASTEiJ_G0020115.1 mouse_genomes_project 13 96410211 96414887 - MGP_CASTEiJ_P0037580 Hmgcr protein_coding protein_coding MGP_CASTEiJ_T0037581.1 MGP_CASTEiJ_G0020115.1 mouse_genomes_project 13 96410535 96429201 - MGP_CASTEiJ_P0037581 Hmgcr protein_coding unknown_likely_coding MGP_CASTEiJ_T0037582.1 MGP_CASTEiJ_G0020115.1 mouse_genomes_project 13 96417062 96429124 - Hmgcr protein_coding retained_intron MGP_CASTEiJ_T0037583.1 MGP_CASTEiJ_G0020115.1 mouse_genomes_project 13 96418327 96429072 - MGP_CASTEiJ_P0037583 Hmgcr protein_coding protein_coding MGP_CASTEiJ_T0037584.1 MGP_CASTEiJ_G0020115.1 mouse_genomes_project 13 96423864 96424746 - Hmgcr protein_coding retained_intron MGP_CASTEiJ_T0037585.1 MGP_CASTEiJ_G0020115.1 mouse_genomes_project 13 96424274 96427804 - MGP_CASTEiJ_P0037585 Hmgcr protein_coding protein_coding MGP_CASTEiJ_T0037586.1 MGP_CASTEiJ_G0020115.1 mouse_genomes_project 13 96424279 96428717 - MGP_CASTEiJ_P0037586 Hmgcr protein_coding protein_coding MGP_CASTEiJ_T0037587.1 MGP_CASTEiJ_G0020115.1 mouse_genomes_project 13 96424477 96429097 - Hmgcr protein_coding retained_intron MGP_CASTEiJ_T0016604.1 MGP_CASTEiJ_G0014564.1 mouse_genomes_project 13 20817764 20819178 - 4930558J22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0036135.1 MGP_CASTEiJ_G0019613.1 mouse_genomes_project 13 20381352 20397457 - MGP_CASTEiJ_P0036135 Zfp322a protein_coding protein_coding MGP_CASTEiJ_T0036136.1 MGP_CASTEiJ_G0019613.1 mouse_genomes_project 13 20385280 20397249 - MGP_CASTEiJ_P0036136 Zfp322a protein_coding protein_coding MGP_CASTEiJ_T0036137.1 MGP_CASTEiJ_G0019613.1 mouse_genomes_project 13 20385281 20397450 - MGP_CASTEiJ_P0036137 Zfp322a protein_coding protein_coding MGP_CASTEiJ_T0036138.1 MGP_CASTEiJ_G0019613.1 mouse_genomes_project 13 20385442 20397443 - MGP_CASTEiJ_P0036138 Zfp322a protein_coding protein_coding MGP_CASTEiJ_T0037525.1 MGP_CASTEiJ_G0020096.1 mouse_genomes_project 13 93965075 94181823 + MGP_CASTEiJ_P0037525 Ap3b1 protein_coding protein_coding MGP_CASTEiJ_T0035935.1 MGP_CASTEiJ_G0019510.1 mouse_genomes_project 13 8878823 8959909 - MGP_CASTEiJ_P0035935 Actn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035936.1 MGP_CASTEiJ_G0019510.1 mouse_genomes_project 13 8881827 8960129 - MGP_CASTEiJ_P0035936 Actn2 protein_coding protein_coding MGP_CASTEiJ_T0035937.1 MGP_CASTEiJ_G0019510.1 mouse_genomes_project 13 8881833 8908311 - MGP_CASTEiJ_P0035937 Actn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035938.1 MGP_CASTEiJ_G0019510.1 mouse_genomes_project 13 8881836 8960093 - MGP_CASTEiJ_P0035938 Actn2 protein_coding protein_coding MGP_CASTEiJ_T0035939.1 MGP_CASTEiJ_G0019510.1 mouse_genomes_project 13 8925576 8960101 - MGP_CASTEiJ_P0035939 Actn2 protein_coding protein_coding MGP_CASTEiJ_T0037747.1 MGP_CASTEiJ_G0020163.1 mouse_genomes_project 13 104405568 104445122 - MGP_CASTEiJ_P0037747 Trappc13 protein_coding protein_coding MGP_CASTEiJ_T0037748.1 MGP_CASTEiJ_G0020163.1 mouse_genomes_project 13 104405575 104445078 - MGP_CASTEiJ_P0037748 Trappc13 protein_coding protein_coding MGP_CASTEiJ_T0037749.1 MGP_CASTEiJ_G0020163.1 mouse_genomes_project 13 104406702 104445076 - MGP_CASTEiJ_P0037749 Trappc13 protein_coding protein_coding MGP_CASTEiJ_T0037750.1 MGP_CASTEiJ_G0020163.1 mouse_genomes_project 13 104407338 104445060 - MGP_CASTEiJ_P0037750 Trappc13 protein_coding protein_coding MGP_CASTEiJ_T0037751.1 MGP_CASTEiJ_G0020163.1 mouse_genomes_project 13 104433166 104445112 - Trappc13 protein_coding retained_intron MGP_CASTEiJ_T0037752.1 MGP_CASTEiJ_G0020163.1 mouse_genomes_project 13 104440353 104445092 - Trappc13 protein_coding processed_transcript MGP_CASTEiJ_T0036705.1 MGP_CASTEiJ_G0019824.1 mouse_genomes_project 13 52073343 52119527 - MGP_CASTEiJ_P0036705 Sptlc1 protein_coding protein_coding MGP_CASTEiJ_T0036905.1 MGP_CASTEiJ_G0019885.1 mouse_genomes_project 13 55619896 55649611 + MGP_CASTEiJ_P0036905 Tgfbi protein_coding protein_coding MGP_CASTEiJ_T0036906.1 MGP_CASTEiJ_G0019885.1 mouse_genomes_project 13 55619922 55707982 + MGP_CASTEiJ_P0036906 Tgfbi protein_coding unknown_likely_coding MGP_CASTEiJ_T0101732.1 MGP_CASTEiJ_G0038540.1 mouse_genomes_project 13 20677443 20677763 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0036650.1 MGP_CASTEiJ_G0019810.1 mouse_genomes_project 13 49675280 49728973 + MGP_CASTEiJ_P0036650 Spin1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036651.1 MGP_CASTEiJ_G0019810.1 mouse_genomes_project 13 49677323 49726362 + MGP_CASTEiJ_P0036651 Spin1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036088.1 MGP_CASTEiJ_G0019575.1 mouse_genomes_project 13 18810330 18810893 + MGP_CASTEiJ_P0036088 Hist1h4j protein_coding protein_coding MGP_CASTEiJ_T0102054.1 MGP_CASTEiJ_G0038779.1 mouse_genomes_project 13 20195108 20196013 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0012565.1 MGP_CASTEiJ_G0010728.1 mouse_genomes_project 13 63811220 63812596 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099336.1 MGP_CASTEiJ_G0036249.1 mouse_genomes_project 13 14066736 14066843 + Gm25020 snRNA snRNA MGP_CASTEiJ_T0036324.1 MGP_CASTEiJ_G0019701.1 mouse_genomes_project 13 30531506 30546798 + MGP_CASTEiJ_P0036324 Serpinb9 protein_coding protein_coding MGP_CASTEiJ_T0036325.1 MGP_CASTEiJ_G0019701.1 mouse_genomes_project 13 30532784 30546796 + MGP_CASTEiJ_P0036325 Serpinb9 protein_coding protein_coding MGP_CASTEiJ_T0036649.1 MGP_CASTEiJ_G0019809.1 mouse_genomes_project 13 48957568 48965623 + MGP_CASTEiJ_P0036649 Nutm2 protein_coding protein_coding MGP_CASTEiJ_T0037483.1 MGP_CASTEiJ_G0020079.1 mouse_genomes_project 13 91989812 92022258 - MGP_CASTEiJ_P0037483 Fam151b protein_coding protein_coding MGP_CASTEiJ_T0037626.1 MGP_CASTEiJ_G0020130.1 mouse_genomes_project 13 98644678 98653291 - MGP_CASTEiJ_P0037626 Tmem171 protein_coding protein_coding MGP_CASTEiJ_T0037627.1 MGP_CASTEiJ_G0020130.1 mouse_genomes_project 13 98650790 98653224 - MGP_CASTEiJ_P0037627 Tmem171 protein_coding protein_coding MGP_CASTEiJ_T0102037.1 MGP_CASTEiJ_G0038762.1 mouse_genomes_project 13 19559463 19560235 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0012582.1 MGP_CASTEiJ_G0010745.1 mouse_genomes_project 13 87032867 87033873 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037495.1 MGP_CASTEiJ_G0020086.1 mouse_genomes_project 13 92694923 92741437 - MGP_CASTEiJ_P0037495 Papd4 protein_coding protein_coding MGP_CASTEiJ_T0003375.1 MGP_CASTEiJ_G0003090.1 mouse_genomes_project 13 91398733 91399346 + 1700119I11Rik antisense antisense MGP_CASTEiJ_T0003376.1 MGP_CASTEiJ_G0003090.1 mouse_genomes_project 13 91398786 91399340 + 1700119I11Rik antisense antisense MGP_CASTEiJ_T0099345.1 MGP_CASTEiJ_G0036258.1 mouse_genomes_project 13 37638847 37639012 - Gm23972 snRNA snRNA MGP_CASTEiJ_T0012538.1 MGP_CASTEiJ_G0010701.1 mouse_genomes_project 13 24503859 24504810 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037177.1 MGP_CASTEiJ_G0019989.1 mouse_genomes_project 13 66618437 66629505 - MGP_CASTEiJ_P0037177 Gm9894 protein_coding protein_coding MGP_CASTEiJ_T0035952.1 MGP_CASTEiJ_G0019516.1 mouse_genomes_project 13 10230658 10309957 + MGP_CASTEiJ_P0035952 Nid1 protein_coding protein_coding MGP_CASTEiJ_T0100569.1 MGP_CASTEiJ_G0037482.1 mouse_genomes_project 13 46917872 46918004 - Gm25232 snoRNA snoRNA MGP_CASTEiJ_T0016626.1 MGP_CASTEiJ_G0014576.1 mouse_genomes_project 13 112485617 112486181 + processed_transcript processed_transcript MGP_CASTEiJ_T0102035.1 MGP_CASTEiJ_G0038760.1 mouse_genomes_project 13 19501261 19501988 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0037032.1 MGP_CASTEiJ_G0019930.1 mouse_genomes_project 13 62082080 62105469 - MGP_CASTEiJ_P0037032 Fbp1 protein_coding protein_coding MGP_CASTEiJ_T0037033.1 MGP_CASTEiJ_G0019930.1 mouse_genomes_project 13 62082093 62090185 - MGP_CASTEiJ_P0037033 Fbp1 protein_coding protein_coding MGP_CASTEiJ_T0037034.1 MGP_CASTEiJ_G0019930.1 mouse_genomes_project 13 62090145 62105315 - MGP_CASTEiJ_P0037034 Fbp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036182.1 MGP_CASTEiJ_G0019642.1 mouse_genomes_project 13 21003952 21004342 + MGP_CASTEiJ_P0036182 Hist1h2aa protein_coding protein_coding MGP_CASTEiJ_T0100556.1 MGP_CASTEiJ_G0037469.1 mouse_genomes_project 13 9244534 9244765 - Gm25483 snoRNA snoRNA MGP_CASTEiJ_T0003337.1 MGP_CASTEiJ_G0003071.1 mouse_genomes_project 13 40737766 40746346 - Gm15810 antisense antisense MGP_CASTEiJ_T0037837.1 MGP_CASTEiJ_G0020187.1 mouse_genomes_project 13 110933213 110937764 - MGP_CASTEiJ_P0037837 Gapt protein_coding protein_coding MGP_CASTEiJ_T0012566.1 MGP_CASTEiJ_G0010729.1 mouse_genomes_project 13 64201410 64203083 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012533.1 MGP_CASTEiJ_G0010696.1 mouse_genomes_project 13 22810385 22811249 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037155.1 MGP_CASTEiJ_G0019979.1 mouse_genomes_project 13 66246877 66258623 - MGP_CASTEiJ_P0037155 Zfp58 protein_coding protein_coding MGP_CASTEiJ_T0037156.1 MGP_CASTEiJ_G0019979.1 mouse_genomes_project 13 66246878 66258675 - MGP_CASTEiJ_P0037156 Zfp58 protein_coding protein_coding MGP_CASTEiJ_T0037158.1 MGP_CASTEiJ_G0019979.1 mouse_genomes_project 13 66248356 66258607 - MGP_CASTEiJ_P0037158 Zfp58 protein_coding protein_coding MGP_CASTEiJ_T0037159.1 MGP_CASTEiJ_G0019979.1 mouse_genomes_project 13 66248571 66258564 - MGP_CASTEiJ_P0037159 Zfp58 protein_coding protein_coding MGP_CASTEiJ_T0000835.1 MGP_CASTEiJ_G0000775.1 mouse_genomes_project 13 16367104 16369454 - TEC TEC MGP_CASTEiJ_T0012510.1 MGP_CASTEiJ_G0010673.1 mouse_genomes_project 13 13919711 13920669 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036229.1 MGP_CASTEiJ_G0019652.1 mouse_genomes_project 13 22031725 22068953 - MGP_CASTEiJ_P0036229 Aldh5a1 protein_coding protein_coding MGP_CASTEiJ_T0036022.1 MGP_CASTEiJ_G0019540.1 mouse_genomes_project 13 16563239 16589822 - MGP_CASTEiJ_P0036022 Epdr1 protein_coding protein_coding MGP_CASTEiJ_T0012581.1 MGP_CASTEiJ_G0010744.1 mouse_genomes_project 13 83868271 83869006 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011027.1 MGP_CASTEiJ_G0009215.1 mouse_genomes_project 13 55719860 55720036 + Gm27271 misc_RNA misc_RNA MGP_CASTEiJ_T0099337.1 MGP_CASTEiJ_G0036250.1 mouse_genomes_project 13 17879178 17879331 + Gm25605 snRNA snRNA MGP_CASTEiJ_T0037249.1 MGP_CASTEiJ_G0020020.1 mouse_genomes_project 13 72826246 72826432 - MGP_CASTEiJ_P0037249 Gm10126 protein_coding protein_coding MGP_CASTEiJ_T0098499.1 MGP_CASTEiJ_G0035430.1 mouse_genomes_project 13 103640824 103640929 + n-R5s56 rRNA rRNA MGP_CASTEiJ_T0037670.1 MGP_CASTEiJ_G0020145.1 mouse_genomes_project 13 100585223 100616310 - MGP_CASTEiJ_P0037670 Gtf2h2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037671.1 MGP_CASTEiJ_G0020145.1 mouse_genomes_project 13 100593762 100616533 - MGP_CASTEiJ_P0037671 Gtf2h2 protein_coding protein_coding MGP_CASTEiJ_T0037672.1 MGP_CASTEiJ_G0020145.1 mouse_genomes_project 13 100593998 100616339 - Gtf2h2 protein_coding retained_intron MGP_CASTEiJ_T0037673.1 MGP_CASTEiJ_G0020145.1 mouse_genomes_project 13 100593998 100616551 - MGP_CASTEiJ_P0037673 Gtf2h2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037674.1 MGP_CASTEiJ_G0020145.1 mouse_genomes_project 13 100601146 100604709 - Gtf2h2 protein_coding processed_transcript MGP_CASTEiJ_T0037675.1 MGP_CASTEiJ_G0020145.1 mouse_genomes_project 13 100603183 100605627 - Gtf2h2 protein_coding processed_transcript MGP_CASTEiJ_T0037676.1 MGP_CASTEiJ_G0020145.1 mouse_genomes_project 13 100605506 100616551 - MGP_CASTEiJ_P0037676 Gtf2h2 protein_coding protein_coding MGP_CASTEiJ_T0037677.1 MGP_CASTEiJ_G0020145.1 mouse_genomes_project 13 100611669 100616346 - Gtf2h2 protein_coding retained_intron MGP_CASTEiJ_T0037678.1 MGP_CASTEiJ_G0020145.1 mouse_genomes_project 13 100612756 100616525 - Gtf2h2 protein_coding processed_transcript MGP_CASTEiJ_T0036316.1 MGP_CASTEiJ_G0019697.1 mouse_genomes_project 13 30325643 30326036 - MGP_CASTEiJ_P0036316 D930007J09Rik protein_coding protein_coding MGP_CASTEiJ_T0009694.1 MGP_CASTEiJ_G0007882.1 mouse_genomes_project 13 81804156 81804215 - Mir3961 miRNA miRNA MGP_CASTEiJ_T0099364.1 MGP_CASTEiJ_G0036277.1 mouse_genomes_project 13 107144361 107144456 - Gm24527 snRNA snRNA MGP_CASTEiJ_T0036839.1 MGP_CASTEiJ_G0019860.1 mouse_genomes_project 13 54373436 54390584 + MGP_CASTEiJ_P0036839 Grk6 protein_coding protein_coding MGP_CASTEiJ_T0036840.1 MGP_CASTEiJ_G0019860.1 mouse_genomes_project 13 54373436 54389544 + MGP_CASTEiJ_P0036840 Grk6 protein_coding protein_coding MGP_CASTEiJ_T0036841.1 MGP_CASTEiJ_G0019860.1 mouse_genomes_project 13 54373611 54389804 + MGP_CASTEiJ_P0036841 Grk6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100573.1 MGP_CASTEiJ_G0037486.1 mouse_genomes_project 13 55141437 55141560 + Gm25148 snoRNA snoRNA MGP_CASTEiJ_T0037634.1 MGP_CASTEiJ_G0020132.1 mouse_genomes_project 13 98823846 98916908 - MGP_CASTEiJ_P0037634 Tnpo1 protein_coding protein_coding MGP_CASTEiJ_T0037635.1 MGP_CASTEiJ_G0020132.1 mouse_genomes_project 13 98834850 98916789 - MGP_CASTEiJ_P0037635 Tnpo1 protein_coding protein_coding MGP_CASTEiJ_T0037636.1 MGP_CASTEiJ_G0020132.1 mouse_genomes_project 13 98837626 98885216 - MGP_CASTEiJ_P0037636 Tnpo1 protein_coding protein_coding MGP_CASTEiJ_T0037637.1 MGP_CASTEiJ_G0020132.1 mouse_genomes_project 13 98865082 98885232 - MGP_CASTEiJ_P0037637 Tnpo1 protein_coding protein_coding MGP_CASTEiJ_T0037354.1 MGP_CASTEiJ_G0020053.1 mouse_genomes_project 13 80800610 80841099 + MGP_CASTEiJ_P0037354 Mblac2 protein_coding protein_coding MGP_CASTEiJ_T0006449.1 MGP_CASTEiJ_G0005353.1 mouse_genomes_project 13 97576146 97592075 - 5330416C01Rik lincRNA lincRNA MGP_CASTEiJ_T0006450.1 MGP_CASTEiJ_G0005353.1 mouse_genomes_project 13 97578039 97587752 - 5330416C01Rik lincRNA lincRNA MGP_CASTEiJ_T0006451.1 MGP_CASTEiJ_G0005353.1 mouse_genomes_project 13 97589365 97592043 - 5330416C01Rik lincRNA lincRNA MGP_CASTEiJ_T0037228.1 MGP_CASTEiJ_G0020011.1 mouse_genomes_project 13 72426654 72443318 + MGP_CASTEiJ_P0037228 Clptm1l protein_coding protein_coding MGP_CASTEiJ_T0006353.1 MGP_CASTEiJ_G0005289.1 mouse_genomes_project 13 24479475 24493153 + 4930511O05Rik lincRNA lincRNA MGP_CASTEiJ_T0016623.1 MGP_CASTEiJ_G0014574.1 mouse_genomes_project 13 108793191 108796273 - Gm2822 processed_transcript processed_transcript MGP_CASTEiJ_T0036163.1 MGP_CASTEiJ_G0019633.1 mouse_genomes_project 13 20812157 20814398 + MGP_CASTEiJ_P0036163 protein_coding protein_coding MGP_CASTEiJ_T0009670.1 MGP_CASTEiJ_G0007858.1 mouse_genomes_project 13 35787843 35787959 + Gm27387 miRNA miRNA MGP_CASTEiJ_T0012534.1 MGP_CASTEiJ_G0010697.1 mouse_genomes_project 13 23354563 23355080 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035931.1 MGP_CASTEiJ_G0019508.1 mouse_genomes_project 13 8102631 8703071 - MGP_CASTEiJ_P0035931 Ryr2 protein_coding protein_coding MGP_CASTEiJ_T0035932.1 MGP_CASTEiJ_G0019508.1 mouse_genomes_project 13 8102631 8703071 - MGP_CASTEiJ_P0035932 Ryr2 protein_coding protein_coding MGP_CASTEiJ_T0035933.1 MGP_CASTEiJ_G0019508.1 mouse_genomes_project 13 8105555 8702572 - MGP_CASTEiJ_P0035933 Ryr2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036049.1 MGP_CASTEiJ_G0019554.1 mouse_genomes_project 13 18398798 18399853 + MGP_CASTEiJ_P0036049 Olfr1367 protein_coding protein_coding MGP_CASTEiJ_T0037092.1 MGP_CASTEiJ_G0019946.1 mouse_genomes_project 13 64206187 64212353 + MGP_CASTEiJ_P0037092 Spata31 protein_coding protein_coding MGP_CASTEiJ_T0101522.1 MGP_CASTEiJ_G0038416.1 mouse_genomes_project 13 21696264 21706564 - transcribed_processed_pseudogene retained_intron MGP_CASTEiJ_T0101523.1 MGP_CASTEiJ_G0038416.1 mouse_genomes_project 13 21697021 21697726 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101524.1 MGP_CASTEiJ_G0038416.1 mouse_genomes_project 13 21697465 21706393 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101525.1 MGP_CASTEiJ_G0038416.1 mouse_genomes_project 13 21697563 21706334 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0011029.1 MGP_CASTEiJ_G0009217.1 mouse_genomes_project 13 99037993 99038231 - Gm24733 misc_RNA misc_RNA MGP_CASTEiJ_T0036075.1 MGP_CASTEiJ_G0019566.1 mouse_genomes_project 13 18633359 18641501 - MGP_CASTEiJ_P0036075 Olfr1364 protein_coding protein_coding MGP_CASTEiJ_T0036076.1 MGP_CASTEiJ_G0019566.1 mouse_genomes_project 13 18633359 18634304 - MGP_CASTEiJ_P0036076 Olfr1364 protein_coding protein_coding MGP_CASTEiJ_T0036302.1 MGP_CASTEiJ_G0019688.1 mouse_genomes_project 13 28366233 28367420 - MGP_CASTEiJ_P0036302 Hus1b protein_coding protein_coding MGP_CASTEiJ_T0011019.1 MGP_CASTEiJ_G0009207.1 mouse_genomes_project 13 36668031 36668259 - Gm22035 misc_RNA misc_RNA MGP_CASTEiJ_T0102050.1 MGP_CASTEiJ_G0038775.1 mouse_genomes_project 13 20011291 20011581 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0037010.1 MGP_CASTEiJ_G0019912.1 mouse_genomes_project 13 59858066 60026144 + MGP_CASTEiJ_P0037010 Dapk1 protein_coding protein_coding MGP_CASTEiJ_T0037011.1 MGP_CASTEiJ_G0019912.1 mouse_genomes_project 13 59858167 60026152 + MGP_CASTEiJ_P0037011 Dapk1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037012.1 MGP_CASTEiJ_G0019912.1 mouse_genomes_project 13 59858330 60026144 + MGP_CASTEiJ_P0037012 Dapk1 protein_coding protein_coding MGP_CASTEiJ_T0036379.1 MGP_CASTEiJ_G0019721.1 mouse_genomes_project 13 32510842 32530602 - MGP_CASTEiJ_P0036379 Eci2 protein_coding protein_coding MGP_CASTEiJ_T0036380.1 MGP_CASTEiJ_G0019721.1 mouse_genomes_project 13 32510843 32530585 - MGP_CASTEiJ_P0036380 Eci2 protein_coding protein_coding MGP_CASTEiJ_T0036381.1 MGP_CASTEiJ_G0019721.1 mouse_genomes_project 13 32510844 32530602 - MGP_CASTEiJ_P0036381 Eci2 protein_coding protein_coding MGP_CASTEiJ_T0036382.1 MGP_CASTEiJ_G0019721.1 mouse_genomes_project 13 32510851 32530590 - MGP_CASTEiJ_P0036382 Eci2 protein_coding protein_coding MGP_CASTEiJ_T0036383.1 MGP_CASTEiJ_G0019721.1 mouse_genomes_project 13 32511798 32523939 - Eci2 protein_coding processed_transcript MGP_CASTEiJ_T0036384.1 MGP_CASTEiJ_G0019721.1 mouse_genomes_project 13 32513356 32524682 - Eci2 protein_coding processed_transcript MGP_CASTEiJ_T0036385.1 MGP_CASTEiJ_G0019721.1 mouse_genomes_project 13 32521010 32523473 - Eci2 protein_coding retained_intron MGP_CASTEiJ_T0036386.1 MGP_CASTEiJ_G0019721.1 mouse_genomes_project 13 32521264 32530581 - MGP_CASTEiJ_P0036386 Eci2 protein_coding protein_coding MGP_CASTEiJ_T0036387.1 MGP_CASTEiJ_G0019721.1 mouse_genomes_project 13 32522641 32530580 - MGP_CASTEiJ_P0036387 Eci2 protein_coding protein_coding MGP_CASTEiJ_T0036161.1 MGP_CASTEiJ_G0019631.1 mouse_genomes_project 13 20806208 20806660 + MGP_CASTEiJ_P0036161 Hist1h2bb protein_coding protein_coding MGP_CASTEiJ_T0037848.1 MGP_CASTEiJ_G0020192.1 mouse_genomes_project 13 112361554 112389016 + MGP_CASTEiJ_P0037848 Mier3 protein_coding protein_coding MGP_CASTEiJ_T0037849.1 MGP_CASTEiJ_G0020192.1 mouse_genomes_project 13 112361652 112388052 + MGP_CASTEiJ_P0037849 Mier3 protein_coding protein_coding MGP_CASTEiJ_T0037850.1 MGP_CASTEiJ_G0020192.1 mouse_genomes_project 13 112361701 112368834 + Mier3 protein_coding retained_intron MGP_CASTEiJ_T0037851.1 MGP_CASTEiJ_G0020192.1 mouse_genomes_project 13 112361702 112389013 + MGP_CASTEiJ_P0037851 Mier3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037852.1 MGP_CASTEiJ_G0020192.1 mouse_genomes_project 13 112361722 112389022 + MGP_CASTEiJ_P0037852 Mier3 protein_coding protein_coding MGP_CASTEiJ_T0016597.1 MGP_CASTEiJ_G0014558.1 mouse_genomes_project 13 12284767 12309410 - Gm6556 processed_transcript antisense MGP_CASTEiJ_T0016598.1 MGP_CASTEiJ_G0014558.1 mouse_genomes_project 13 12308561 12310465 - Gm6556 processed_transcript TEC MGP_CASTEiJ_T0036530.1 MGP_CASTEiJ_G0019772.1 mouse_genomes_project 13 43645191 43684340 + MGP_CASTEiJ_P0036530 Gmpr protein_coding protein_coding MGP_CASTEiJ_T0036531.1 MGP_CASTEiJ_G0019772.1 mouse_genomes_project 13 43645363 43684347 + MGP_CASTEiJ_P0036531 Gmpr protein_coding unknown_likely_coding MGP_CASTEiJ_T0036532.1 MGP_CASTEiJ_G0019772.1 mouse_genomes_project 13 43651589 43683856 + MGP_CASTEiJ_P0036532 Gmpr protein_coding protein_coding MGP_CASTEiJ_T0036533.1 MGP_CASTEiJ_G0019772.1 mouse_genomes_project 13 43676769 43680511 + Gmpr protein_coding retained_intron MGP_CASTEiJ_T0036842.1 MGP_CASTEiJ_G0019861.1 mouse_genomes_project 13 54396036 54404929 + MGP_CASTEiJ_P0036842 Prr7 protein_coding protein_coding MGP_CASTEiJ_T0037881.1 MGP_CASTEiJ_G0020203.1 mouse_genomes_project 13 113753659 113760066 + MGP_CASTEiJ_P0037881 Mcidas protein_coding protein_coding MGP_CASTEiJ_T0101528.1 MGP_CASTEiJ_G0038418.1 mouse_genomes_project 13 103398579 103402853 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0035834.1 MGP_CASTEiJ_G0019484.1 mouse_genomes_project 13 439137 443782 - MGP_CASTEiJ_P0035834 Ucn3 protein_coding protein_coding MGP_CASTEiJ_T0037873.1 MGP_CASTEiJ_G0020197.1 mouse_genomes_project 13 113317752 113376338 - MGP_CASTEiJ_P0037873 Ddx4 protein_coding protein_coding MGP_CASTEiJ_T0037874.1 MGP_CASTEiJ_G0020197.1 mouse_genomes_project 13 113317752 113376338 - MGP_CASTEiJ_P0037874 Ddx4 protein_coding protein_coding MGP_CASTEiJ_T0003378.1 MGP_CASTEiJ_G0003092.1 mouse_genomes_project 13 93186346 93190848 + Gm15622 antisense antisense MGP_CASTEiJ_T0036732.1 MGP_CASTEiJ_G0019834.1 mouse_genomes_project 13 53433253 53439359 + MGP_CASTEiJ_P0036732 Arl10 protein_coding protein_coding MGP_CASTEiJ_T0036733.1 MGP_CASTEiJ_G0019834.1 mouse_genomes_project 13 53433285 53437248 + MGP_CASTEiJ_P0036733 Arl10 protein_coding protein_coding MGP_CASTEiJ_T0036734.1 MGP_CASTEiJ_G0019834.1 mouse_genomes_project 13 53436613 53437141 + Arl10 protein_coding processed_transcript MGP_CASTEiJ_T0036735.1 MGP_CASTEiJ_G0019834.1 mouse_genomes_project 13 53437043 53437765 + MGP_CASTEiJ_P0036735 Arl10 protein_coding protein_coding MGP_CASTEiJ_T0006396.1 MGP_CASTEiJ_G0005319.1 mouse_genomes_project 13 46873887 46876186 - 6720427I07Rik lincRNA lincRNA MGP_CASTEiJ_T0036166.1 MGP_CASTEiJ_G0019636.1 mouse_genomes_project 13 20845849 20854815 + MGP_CASTEiJ_P0036166 Trim38 protein_coding protein_coding MGP_CASTEiJ_T0009705.1 MGP_CASTEiJ_G0007893.1 mouse_genomes_project 13 113800049 113800131 + Mir449b miRNA miRNA MGP_CASTEiJ_T0012514.1 MGP_CASTEiJ_G0010677.1 mouse_genomes_project 13 18348859 18349330 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037414.1 MGP_CASTEiJ_G0020061.1 mouse_genomes_project 13 88934812 89013889 + MGP_CASTEiJ_P0037414 Hapln1 protein_coding protein_coding MGP_CASTEiJ_T0036565.1 MGP_CASTEiJ_G0019784.1 mouse_genomes_project 13 45310931 45324528 - Dek protein_coding processed_transcript MGP_CASTEiJ_T0036566.1 MGP_CASTEiJ_G0019784.1 mouse_genomes_project 13 45310938 45332262 - MGP_CASTEiJ_P0036566 Dek protein_coding protein_coding MGP_CASTEiJ_T0036567.1 MGP_CASTEiJ_G0019784.1 mouse_genomes_project 13 45314754 45332273 - MGP_CASTEiJ_P0036567 Dek protein_coding protein_coding MGP_CASTEiJ_T0036568.1 MGP_CASTEiJ_G0019784.1 mouse_genomes_project 13 45324244 45331902 - MGP_CASTEiJ_P0036568 Dek protein_coding protein_coding MGP_CASTEiJ_T0036569.1 MGP_CASTEiJ_G0019784.1 mouse_genomes_project 13 45327548 45332226 - Dek protein_coding processed_transcript MGP_CASTEiJ_T0036570.1 MGP_CASTEiJ_G0019784.1 mouse_genomes_project 13 45331461 45332255 - Dek protein_coding processed_transcript MGP_CASTEiJ_T0009704.1 MGP_CASTEiJ_G0007892.1 mouse_genomes_project 13 113798615 113798724 + Mir449c miRNA miRNA MGP_CASTEiJ_T0100578.1 MGP_CASTEiJ_G0037491.1 mouse_genomes_project 13 74673232 74673315 + Gm23012 snoRNA snoRNA MGP_CASTEiJ_T0009665.1 MGP_CASTEiJ_G0007853.1 mouse_genomes_project 13 19017207 19017296 - Gm44456 miRNA miRNA MGP_CASTEiJ_T0012587.1 MGP_CASTEiJ_G0010750.1 mouse_genomes_project 13 93295888 93296222 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036233.1 MGP_CASTEiJ_G0019654.1 mouse_genomes_project 13 22126673 22146321 - MGP_CASTEiJ_P0036233 Mrs2 protein_coding protein_coding MGP_CASTEiJ_T0036328.1 MGP_CASTEiJ_G0019704.1 mouse_genomes_project 13 30684889 30698288 - MGP_CASTEiJ_P0036328 Serpinb9c protein_coding protein_coding MGP_CASTEiJ_T0036329.1 MGP_CASTEiJ_G0019704.1 mouse_genomes_project 13 30695008 30697038 - MGP_CASTEiJ_P0036329 Serpinb9c protein_coding protein_coding MGP_CASTEiJ_T0006407.1 MGP_CASTEiJ_G0005323.1 mouse_genomes_project 13 52156506 52169044 - Gm43262 lincRNA lincRNA MGP_CASTEiJ_T0003381.1 MGP_CASTEiJ_G0003094.1 mouse_genomes_project 13 98255173 98256005 + Gm9828 antisense antisense MGP_CASTEiJ_T0003382.1 MGP_CASTEiJ_G0003094.1 mouse_genomes_project 13 98255820 98261054 + Gm9828 antisense antisense MGP_CASTEiJ_T0003383.1 MGP_CASTEiJ_G0003094.1 mouse_genomes_project 13 98255867 98262993 + Gm9828 antisense antisense MGP_CASTEiJ_T0003384.1 MGP_CASTEiJ_G0003094.1 mouse_genomes_project 13 98257728 98260560 + Gm9828 antisense antisense MGP_CASTEiJ_T0037559.1 MGP_CASTEiJ_G0020109.1 mouse_genomes_project 13 95661902 95849576 - MGP_CASTEiJ_P0037559 Sv2c protein_coding protein_coding MGP_CASTEiJ_T0037560.1 MGP_CASTEiJ_G0020109.1 mouse_genomes_project 13 95668443 95692925 - Sv2c protein_coding processed_transcript MGP_CASTEiJ_T0037561.1 MGP_CASTEiJ_G0020109.1 mouse_genomes_project 13 95683919 95801770 - MGP_CASTEiJ_P0037561 Sv2c protein_coding protein_coding MGP_CASTEiJ_T0035958.1 MGP_CASTEiJ_G0019521.1 mouse_genomes_project 13 10792201 10793575 - MGP_CASTEiJ_P0035958 Gm18856 protein_coding protein_coding MGP_CASTEiJ_T0012578.1 MGP_CASTEiJ_G0010741.1 mouse_genomes_project 13 79140862 79142037 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037186.1 MGP_CASTEiJ_G0019994.1 mouse_genomes_project 13 67211984 67228622 + MGP_CASTEiJ_P0037186 1700001L19Rik protein_coding protein_coding MGP_CASTEiJ_T0012558.1 MGP_CASTEiJ_G0010721.1 mouse_genomes_project 13 60035955 60036321 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035855.1 MGP_CASTEiJ_G0019496.1 mouse_genomes_project 13 2967150 2969693 + MGP_CASTEiJ_P0035855 Gm28465 protein_coding protein_coding MGP_CASTEiJ_T0000845.1 MGP_CASTEiJ_G0000784.1 mouse_genomes_project 13 64217089 64217230 - TEC TEC MGP_CASTEiJ_T0035833.1 MGP_CASTEiJ_G0019483.1 mouse_genomes_project 13 422919 433426 + MGP_CASTEiJ_P0035833 Tubal3 protein_coding protein_coding MGP_CASTEiJ_T0036071.1 MGP_CASTEiJ_G0019563.1 mouse_genomes_project 13 18599656 18600710 - MGP_CASTEiJ_P0036071 protein_coding protein_coding MGP_CASTEiJ_T0036073.1 MGP_CASTEiJ_G0019563.1 mouse_genomes_project 13 18599920 18605473 - MGP_CASTEiJ_P0036073 protein_coding protein_coding MGP_CASTEiJ_T0012588.1 MGP_CASTEiJ_G0010751.1 mouse_genomes_project 13 98975261 98975594 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012569.1 MGP_CASTEiJ_G0010732.1 mouse_genomes_project 13 67427329 67428082 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036636.1 MGP_CASTEiJ_G0019808.1 mouse_genomes_project 13 48906545 48922543 + MGP_CASTEiJ_P0036636 Fbxw17 protein_coding protein_coding MGP_CASTEiJ_T0036637.1 MGP_CASTEiJ_G0019808.1 mouse_genomes_project 13 48906562 48914437 + MGP_CASTEiJ_P0036637 Fbxw17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036638.1 MGP_CASTEiJ_G0019808.1 mouse_genomes_project 13 48906567 48919036 + Fbxw17 protein_coding processed_transcript MGP_CASTEiJ_T0036639.1 MGP_CASTEiJ_G0019808.1 mouse_genomes_project 13 48906567 48922554 + MGP_CASTEiJ_P0036639 Fbxw17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036640.1 MGP_CASTEiJ_G0019808.1 mouse_genomes_project 13 48906576 48908948 + Fbxw17 protein_coding retained_intron MGP_CASTEiJ_T0036641.1 MGP_CASTEiJ_G0019808.1 mouse_genomes_project 13 48912518 48916072 + Fbxw17 protein_coding processed_transcript MGP_CASTEiJ_T0036642.1 MGP_CASTEiJ_G0019808.1 mouse_genomes_project 13 48918745 48920881 + Fbxw17 protein_coding retained_intron MGP_CASTEiJ_T0036643.1 MGP_CASTEiJ_G0019808.1 mouse_genomes_project 13 48919891 48922550 + Fbxw17 protein_coding retained_intron MGP_CASTEiJ_T0036644.1 MGP_CASTEiJ_G0019808.1 mouse_genomes_project 13 48919941 48921147 + Fbxw17 protein_coding retained_intron MGP_CASTEiJ_T0036645.1 MGP_CASTEiJ_G0019808.1 mouse_genomes_project 13 48920127 48921010 + Fbxw17 protein_coding retained_intron MGP_CASTEiJ_T0036646.1 MGP_CASTEiJ_G0019808.1 mouse_genomes_project 13 48920446 48921124 + Fbxw17 protein_coding retained_intron MGP_CASTEiJ_T0036647.1 MGP_CASTEiJ_G0019808.1 mouse_genomes_project 13 48920481 48922543 + MGP_CASTEiJ_P0036647 Fbxw17 protein_coding protein_coding MGP_CASTEiJ_T0036648.1 MGP_CASTEiJ_G0019808.1 mouse_genomes_project 13 48920955 48922537 + MGP_CASTEiJ_P0036648 Fbxw17 protein_coding protein_coding MGP_CASTEiJ_T0100576.1 MGP_CASTEiJ_G0037489.1 mouse_genomes_project 13 64456784 64456933 + Gm24130 snoRNA snoRNA MGP_CASTEiJ_T0036110.1 MGP_CASTEiJ_G0019588.1 mouse_genomes_project 13 19136911 19137361 + MGP_CASTEiJ_P0036110 Hist1h2bj protein_coding protein_coding MGP_CASTEiJ_T0037075.1 MGP_CASTEiJ_G0019936.1 mouse_genomes_project 13 63327643 63358475 - MGP_CASTEiJ_P0037075 Hsd17b3 protein_coding protein_coding MGP_CASTEiJ_T0037076.1 MGP_CASTEiJ_G0019936.1 mouse_genomes_project 13 63327643 63358490 - MGP_CASTEiJ_P0037076 Hsd17b3 protein_coding protein_coding MGP_CASTEiJ_T0006399.1 MGP_CASTEiJ_G0005322.1 mouse_genomes_project 13 52140456 52144753 + Gm2762 lincRNA lincRNA MGP_CASTEiJ_T0006400.1 MGP_CASTEiJ_G0005322.1 mouse_genomes_project 13 52140472 52206443 + Gm2762 lincRNA lincRNA MGP_CASTEiJ_T0006401.1 MGP_CASTEiJ_G0005322.1 mouse_genomes_project 13 52140488 52207528 + Gm2762 lincRNA lincRNA MGP_CASTEiJ_T0006402.1 MGP_CASTEiJ_G0005322.1 mouse_genomes_project 13 52140896 52142136 + Gm2762 lincRNA lincRNA MGP_CASTEiJ_T0006403.1 MGP_CASTEiJ_G0005322.1 mouse_genomes_project 13 52141090 52144947 + Gm2762 lincRNA lincRNA MGP_CASTEiJ_T0006404.1 MGP_CASTEiJ_G0005322.1 mouse_genomes_project 13 52141090 52155008 + Gm2762 lincRNA lincRNA MGP_CASTEiJ_T0006405.1 MGP_CASTEiJ_G0005322.1 mouse_genomes_project 13 52142132 52144963 + Gm2762 lincRNA lincRNA MGP_CASTEiJ_T0006406.1 MGP_CASTEiJ_G0005322.1 mouse_genomes_project 13 52151465 52155489 + Gm2762 lincRNA lincRNA MGP_CASTEiJ_T0037899.1 MGP_CASTEiJ_G0020212.1 mouse_genomes_project 13 114605495 114985480 + MGP_CASTEiJ_P0037899 Arl15 protein_coding protein_coding MGP_CASTEiJ_T0009682.1 MGP_CASTEiJ_G0007870.1 mouse_genomes_project 13 54409454 54409550 - Mir6944 miRNA miRNA MGP_CASTEiJ_T0012573.1 MGP_CASTEiJ_G0010736.1 mouse_genomes_project 13 73198702 73199041 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036272.1 MGP_CASTEiJ_G0019676.1 mouse_genomes_project 13 25025974 25033024 + MGP_CASTEiJ_P0036272 Prl2a1 protein_coding protein_coding MGP_CASTEiJ_T0036618.1 MGP_CASTEiJ_G0019799.1 mouse_genomes_project 13 47823271 47871183 + MGP_CASTEiJ_P0036618 Ippk protein_coding protein_coding MGP_CASTEiJ_T0037858.1 MGP_CASTEiJ_G0020194.1 mouse_genomes_project 13 112992465 113050886 + MGP_CASTEiJ_P0037858 Ankrd55 protein_coding protein_coding MGP_CASTEiJ_T0037859.1 MGP_CASTEiJ_G0020194.1 mouse_genomes_project 13 112992465 113091381 + MGP_CASTEiJ_P0037859 Ankrd55 protein_coding protein_coding MGP_CASTEiJ_T0037860.1 MGP_CASTEiJ_G0020194.1 mouse_genomes_project 13 112992465 113091383 + MGP_CASTEiJ_P0037860 Ankrd55 protein_coding protein_coding MGP_CASTEiJ_T0037861.1 MGP_CASTEiJ_G0020194.1 mouse_genomes_project 13 112992532 113063596 + MGP_CASTEiJ_P0037861 Ankrd55 protein_coding protein_coding MGP_CASTEiJ_T0035994.1 MGP_CASTEiJ_G0019530.1 mouse_genomes_project 13 13722307 14567554 - MGP_CASTEiJ_P0035994 Sugct protein_coding protein_coding MGP_CASTEiJ_T0102048.1 MGP_CASTEiJ_G0038773.1 mouse_genomes_project 13 19938819 19939721 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002426.1 MGP_CASTEiJ_G0002341.1 mouse_genomes_project 13 16316331 16316392 + MGP_CASTEiJ_P0002426 Trgj4 TR_J_gene TR_J_gene MGP_CASTEiJ_T0037808.1 MGP_CASTEiJ_G0020183.1 mouse_genomes_project 13 108689503 108766775 + MGP_CASTEiJ_P0037808 Elovl7 protein_coding protein_coding MGP_CASTEiJ_T0037279.1 MGP_CASTEiJ_G0020030.1 mouse_genomes_project 13 73227332 73237153 - MGP_CASTEiJ_P0037279 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037280.1 MGP_CASTEiJ_G0020030.1 mouse_genomes_project 13 73229428 73234965 - MGP_CASTEiJ_P0037280 protein_coding protein_coding MGP_CASTEiJ_T0036312.1 MGP_CASTEiJ_G0019695.1 mouse_genomes_project 13 30219728 30304501 - MGP_CASTEiJ_P0036312 protein_coding protein_coding MGP_CASTEiJ_T0036313.1 MGP_CASTEiJ_G0019695.1 mouse_genomes_project 13 30220133 30325000 - MGP_CASTEiJ_P0036313 protein_coding protein_coding MGP_CASTEiJ_T0036314.1 MGP_CASTEiJ_G0019695.1 mouse_genomes_project 13 30289267 30306746 - protein_coding processed_transcript MGP_CASTEiJ_T0036831.1 MGP_CASTEiJ_G0019855.1 mouse_genomes_project 13 54261555 54282696 - MGP_CASTEiJ_P0036831 Lman2 protein_coding protein_coding MGP_CASTEiJ_T0036881.1 MGP_CASTEiJ_G0019874.1 mouse_genomes_project 13 54738657 54766319 + MGP_CASTEiJ_P0036881 Catsper3 protein_coding protein_coding MGP_CASTEiJ_T0036882.1 MGP_CASTEiJ_G0019874.1 mouse_genomes_project 13 54738668 54766350 + MGP_CASTEiJ_P0036882 Catsper3 protein_coding protein_coding MGP_CASTEiJ_T0036543.1 MGP_CASTEiJ_G0019778.1 mouse_genomes_project 13 44871187 44879725 + MGP_CASTEiJ_P0036543 Fam8a1 protein_coding protein_coding MGP_CASTEiJ_T0036544.1 MGP_CASTEiJ_G0019778.1 mouse_genomes_project 13 44872855 44875479 + Fam8a1 protein_coding retained_intron MGP_CASTEiJ_T0037962.1 MGP_CASTEiJ_G0020236.1 mouse_genomes_project 13 120846422 120900798 - MGP_CASTEiJ_P0037962 Nim1k protein_coding protein_coding MGP_CASTEiJ_T0037963.1 MGP_CASTEiJ_G0020236.1 mouse_genomes_project 13 120860983 120877072 - MGP_CASTEiJ_P0037963 Nim1k protein_coding protein_coding MGP_CASTEiJ_T0100559.1 MGP_CASTEiJ_G0037472.1 mouse_genomes_project 13 19901378 19901509 - Gm23774 snoRNA snoRNA MGP_CASTEiJ_T0037770.1 MGP_CASTEiJ_G0020170.1 mouse_genomes_project 13 105171624 105197800 - MGP_CASTEiJ_P0037770 Fam159b protein_coding protein_coding MGP_CASTEiJ_T0037385.1 MGP_CASTEiJ_G0020056.1 mouse_genomes_project 13 83380317 83458532 + MGP_CASTEiJ_P0037385 Tmem161b protein_coding protein_coding MGP_CASTEiJ_T0036424.1 MGP_CASTEiJ_G0019734.1 mouse_genomes_project 13 35855584 35905499 + MGP_CASTEiJ_P0036424 Dsp protein_coding protein_coding MGP_CASTEiJ_T0036425.1 MGP_CASTEiJ_G0019734.1 mouse_genomes_project 13 35855604 35905499 + MGP_CASTEiJ_P0036425 Dsp protein_coding protein_coding MGP_CASTEiJ_T0036426.1 MGP_CASTEiJ_G0019734.1 mouse_genomes_project 13 35855818 35904998 + MGP_CASTEiJ_P0036426 Dsp protein_coding unknown_likely_coding MGP_CASTEiJ_T0036427.1 MGP_CASTEiJ_G0019734.1 mouse_genomes_project 13 35884000 35887859 + Dsp protein_coding processed_transcript MGP_CASTEiJ_T0036498.1 MGP_CASTEiJ_G0019761.1 mouse_genomes_project 13 41183870 41286083 - MGP_CASTEiJ_P0036498 Gfod1 protein_coding protein_coding MGP_CASTEiJ_T0037101.1 MGP_CASTEiJ_G0019952.1 mouse_genomes_project 13 64473941 64497166 - MGP_CASTEiJ_P0037101 Nlrp4f protein_coding protein_coding MGP_CASTEiJ_T0006360.1 MGP_CASTEiJ_G0005293.1 mouse_genomes_project 13 28639844 28647726 - 4930401O12Rik lincRNA lincRNA MGP_CASTEiJ_T0037318.1 MGP_CASTEiJ_G0020046.1 mouse_genomes_project 13 76659757 77126230 + MGP_CASTEiJ_P0037318 Fam172a protein_coding protein_coding MGP_CASTEiJ_T0037319.1 MGP_CASTEiJ_G0020046.1 mouse_genomes_project 13 76659762 77123434 + MGP_CASTEiJ_P0037319 Fam172a protein_coding protein_coding MGP_CASTEiJ_T0036036.1 MGP_CASTEiJ_G0019548.1 mouse_genomes_project 13 18176659 18177723 - MGP_CASTEiJ_P0036036 Olfr1368 protein_coding protein_coding MGP_CASTEiJ_T0036037.1 MGP_CASTEiJ_G0019548.1 mouse_genomes_project 13 18177285 18180586 - MGP_CASTEiJ_P0036037 Olfr1368 protein_coding protein_coding MGP_CASTEiJ_T0037508.1 MGP_CASTEiJ_G0020088.1 mouse_genomes_project 13 92978657 93055084 - MGP_CASTEiJ_P0037508 Jmy protein_coding protein_coding MGP_CASTEiJ_T0037798.1 MGP_CASTEiJ_G0020182.1 mouse_genomes_project 13 108628639 108669152 + MGP_CASTEiJ_P0037798 Ercc8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037799.1 MGP_CASTEiJ_G0020182.1 mouse_genomes_project 13 108628645 108633603 + Ercc8 protein_coding retained_intron MGP_CASTEiJ_T0037800.1 MGP_CASTEiJ_G0020182.1 mouse_genomes_project 13 108628645 108646196 + MGP_CASTEiJ_P0037800 Ercc8 protein_coding protein_coding MGP_CASTEiJ_T0037801.1 MGP_CASTEiJ_G0020182.1 mouse_genomes_project 13 108628645 108648940 + MGP_CASTEiJ_P0037801 Ercc8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037802.1 MGP_CASTEiJ_G0020182.1 mouse_genomes_project 13 108628645 108668742 + MGP_CASTEiJ_P0037802 Ercc8 protein_coding protein_coding MGP_CASTEiJ_T0037803.1 MGP_CASTEiJ_G0020182.1 mouse_genomes_project 13 108628661 108668742 + MGP_CASTEiJ_P0037803 Ercc8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037804.1 MGP_CASTEiJ_G0020182.1 mouse_genomes_project 13 108628678 108668734 + MGP_CASTEiJ_P0037804 Ercc8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037805.1 MGP_CASTEiJ_G0020182.1 mouse_genomes_project 13 108628682 108644637 + MGP_CASTEiJ_P0037805 Ercc8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037806.1 MGP_CASTEiJ_G0020182.1 mouse_genomes_project 13 108628710 108655602 + MGP_CASTEiJ_P0037806 Ercc8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037807.1 MGP_CASTEiJ_G0020182.1 mouse_genomes_project 13 108628711 108650351 + MGP_CASTEiJ_P0037807 Ercc8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036149.1 MGP_CASTEiJ_G0019623.1 mouse_genomes_project 13 20637575 20677808 - MGP_CASTEiJ_P0036149 Hist1h2be protein_coding protein_coding MGP_CASTEiJ_T0036150.1 MGP_CASTEiJ_G0019623.1 mouse_genomes_project 13 20637576 20677838 - MGP_CASTEiJ_P0036150 Hist1h2be protein_coding protein_coding MGP_CASTEiJ_T0036151.1 MGP_CASTEiJ_G0019623.1 mouse_genomes_project 13 20675698 20677792 - Hist1h2be protein_coding processed_transcript MGP_CASTEiJ_T0006355.1 MGP_CASTEiJ_G0005291.1 mouse_genomes_project 13 26380392 26381702 + A330102I10Rik lincRNA lincRNA MGP_CASTEiJ_T0006356.1 MGP_CASTEiJ_G0005291.1 mouse_genomes_project 13 26380465 26395669 + A330102I10Rik lincRNA lincRNA MGP_CASTEiJ_T0006357.1 MGP_CASTEiJ_G0005291.1 mouse_genomes_project 13 26382317 26395737 + A330102I10Rik lincRNA lincRNA MGP_CASTEiJ_T0006358.1 MGP_CASTEiJ_G0005291.1 mouse_genomes_project 13 26382731 26408138 + A330102I10Rik lincRNA lincRNA MGP_CASTEiJ_T0036109.1 MGP_CASTEiJ_G0019587.1 mouse_genomes_project 13 19136757 19137400 + MGP_CASTEiJ_P0036109 Hist1h2bp protein_coding protein_coding MGP_CASTEiJ_T0036167.1 MGP_CASTEiJ_G0019637.1 mouse_genomes_project 13 20870600 20887289 + Slc17a2 protein_coding retained_intron MGP_CASTEiJ_T0036168.1 MGP_CASTEiJ_G0019637.1 mouse_genomes_project 13 20870634 20889077 + MGP_CASTEiJ_P0036168 Slc17a2 protein_coding protein_coding MGP_CASTEiJ_T0036169.1 MGP_CASTEiJ_G0019637.1 mouse_genomes_project 13 20870652 20887060 + Slc17a2 protein_coding retained_intron MGP_CASTEiJ_T0036170.1 MGP_CASTEiJ_G0019637.1 mouse_genomes_project 13 20870655 20886641 + MGP_CASTEiJ_P0036170 Slc17a2 protein_coding protein_coding MGP_CASTEiJ_T0009656.1 MGP_CASTEiJ_G0007844.1 mouse_genomes_project 13 2335457 2335532 - Gm26043 miRNA miRNA MGP_CASTEiJ_T0037241.1 MGP_CASTEiJ_G0020016.1 mouse_genomes_project 13 72651608 72678840 - MGP_CASTEiJ_P0037241 Nkd2 protein_coding protein_coding MGP_CASTEiJ_T0037242.1 MGP_CASTEiJ_G0020016.1 mouse_genomes_project 13 72652759 72678821 - MGP_CASTEiJ_P0037242 Nkd2 protein_coding protein_coding MGP_CASTEiJ_T0037243.1 MGP_CASTEiJ_G0020016.1 mouse_genomes_project 13 72656622 72678821 - Nkd2 protein_coding retained_intron MGP_CASTEiJ_T0037321.1 MGP_CASTEiJ_G0020048.1 mouse_genomes_project 13 77130608 77152800 - MGP_CASTEiJ_P0037321 Nr2f1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037322.1 MGP_CASTEiJ_G0020048.1 mouse_genomes_project 13 77146036 77163470 - MGP_CASTEiJ_P0037322 Nr2f1 protein_coding protein_coding MGP_CASTEiJ_T0037323.1 MGP_CASTEiJ_G0020048.1 mouse_genomes_project 13 77146215 77154106 - MGP_CASTEiJ_P0037323 Nr2f1 protein_coding protein_coding MGP_CASTEiJ_T0037324.1 MGP_CASTEiJ_G0020048.1 mouse_genomes_project 13 77146729 77154998 - MGP_CASTEiJ_P0037324 Nr2f1 protein_coding protein_coding MGP_CASTEiJ_T0037325.1 MGP_CASTEiJ_G0020048.1 mouse_genomes_project 13 77146790 77153449 - MGP_CASTEiJ_P0037325 Nr2f1 protein_coding protein_coding MGP_CASTEiJ_T0037326.1 MGP_CASTEiJ_G0020048.1 mouse_genomes_project 13 77146929 77147501 - Nr2f1 protein_coding processed_transcript MGP_CASTEiJ_T0036165.1 MGP_CASTEiJ_G0019635.1 mouse_genomes_project 13 20822362 20822903 - MGP_CASTEiJ_P0036165 Hist1h4a protein_coding protein_coding MGP_CASTEiJ_T0012562.1 MGP_CASTEiJ_G0010725.1 mouse_genomes_project 13 63213026 63213619 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100570.1 MGP_CASTEiJ_G0037483.1 mouse_genomes_project 13 48108153 48108286 + Gm25394 snoRNA snoRNA MGP_CASTEiJ_T0012585.1 MGP_CASTEiJ_G0010748.1 mouse_genomes_project 13 89071265 89071867 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036164.1 MGP_CASTEiJ_G0019634.1 mouse_genomes_project 13 20818573 20818970 + MGP_CASTEiJ_P0036164 Hist1h4b protein_coding protein_coding MGP_CASTEiJ_T0036954.1 MGP_CASTEiJ_G0019898.1 mouse_genomes_project 13 57640747 57653334 - MGP_CASTEiJ_P0036954 Slc28a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036955.1 MGP_CASTEiJ_G0019898.1 mouse_genomes_project 13 57648558 57707445 - MGP_CASTEiJ_P0036955 Slc28a3 protein_coding protein_coding MGP_CASTEiJ_T0036956.1 MGP_CASTEiJ_G0019898.1 mouse_genomes_project 13 57677876 57707445 - MGP_CASTEiJ_P0036956 Slc28a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036957.1 MGP_CASTEiJ_G0019898.1 mouse_genomes_project 13 57680979 57707437 - Slc28a3 protein_coding retained_intron MGP_CASTEiJ_T0037021.1 MGP_CASTEiJ_G0019920.1 mouse_genomes_project 13 60264186 60269835 - MGP_CASTEiJ_P0037021 Ctsj protein_coding protein_coding MGP_CASTEiJ_T0006445.1 MGP_CASTEiJ_G0005351.1 mouse_genomes_project 13 97100805 97103578 + C430039J16Rik lincRNA lincRNA MGP_CASTEiJ_T0037009.1 MGP_CASTEiJ_G0019911.1 mouse_genomes_project 13 59431285 59432287 + MGP_CASTEiJ_P0037009 Gm5084 protein_coding protein_coding MGP_CASTEiJ_T0098832.1 MGP_CASTEiJ_G0035759.1 mouse_genomes_project 13 40969327 40976664 + Gm15809 sense_intronic sense_intronic MGP_CASTEiJ_T0036835.1 MGP_CASTEiJ_G0019857.1 mouse_genomes_project 13 54321482 54336472 + MGP_CASTEiJ_P0036835 Slc34a1 protein_coding protein_coding MGP_CASTEiJ_T0006369.1 MGP_CASTEiJ_G0005300.1 mouse_genomes_project 13 29000832 29030313 - lincRNA lincRNA MGP_CASTEiJ_T0006370.1 MGP_CASTEiJ_G0005300.1 mouse_genomes_project 13 29004260 29030321 - lincRNA lincRNA MGP_CASTEiJ_T0006371.1 MGP_CASTEiJ_G0005300.1 mouse_genomes_project 13 29026095 29030321 - lincRNA lincRNA MGP_CASTEiJ_T0036245.1 MGP_CASTEiJ_G0019660.1 mouse_genomes_project 13 24286655 24323479 + MGP_CASTEiJ_P0036245 protein_coding protein_coding MGP_CASTEiJ_T0036247.1 MGP_CASTEiJ_G0019660.1 mouse_genomes_project 13 24286660 24323415 + MGP_CASTEiJ_P0036247 protein_coding protein_coding MGP_CASTEiJ_T0098834.1 MGP_CASTEiJ_G0035761.1 mouse_genomes_project 13 90869456 90869909 - Gm29540 sense_intronic sense_intronic MGP_CASTEiJ_T0098496.1 MGP_CASTEiJ_G0035427.1 mouse_genomes_project 13 44715794 44715872 + Gm24915 rRNA rRNA MGP_CASTEiJ_T0037700.1 MGP_CASTEiJ_G0020154.1 mouse_genomes_project 13 100930269 100940933 - MGP_CASTEiJ_P0037700 Ccnb1 protein_coding protein_coding MGP_CASTEiJ_T0037701.1 MGP_CASTEiJ_G0020154.1 mouse_genomes_project 13 100935151 100940765 - MGP_CASTEiJ_P0037701 Ccnb1 protein_coding protein_coding MGP_CASTEiJ_T0037702.1 MGP_CASTEiJ_G0020154.1 mouse_genomes_project 13 100937394 100939966 - Ccnb1 protein_coding retained_intron MGP_CASTEiJ_T0037703.1 MGP_CASTEiJ_G0020154.1 mouse_genomes_project 13 100939899 100940838 - Ccnb1 protein_coding retained_intron MGP_CASTEiJ_T0006416.1 MGP_CASTEiJ_G0005331.1 mouse_genomes_project 13 58931792 58933337 + 4930528D03Rik lincRNA lincRNA MGP_CASTEiJ_T0006417.1 MGP_CASTEiJ_G0005331.1 mouse_genomes_project 13 58931797 58936401 + 4930528D03Rik lincRNA lincRNA MGP_CASTEiJ_T0037439.1 MGP_CASTEiJ_G0020068.1 mouse_genomes_project 13 90387353 90699928 - MGP_CASTEiJ_P0037439 Atg10 protein_coding protein_coding MGP_CASTEiJ_T0036035.1 MGP_CASTEiJ_G0019547.1 mouse_genomes_project 13 18092289 18093240 - MGP_CASTEiJ_P0036035 Olfr1370 protein_coding protein_coding MGP_CASTEiJ_T0102045.1 MGP_CASTEiJ_G0038770.1 mouse_genomes_project 13 19929301 19930176 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100562.1 MGP_CASTEiJ_G0037475.1 mouse_genomes_project 13 28785385 28785500 + Gm22330 snoRNA snoRNA MGP_CASTEiJ_T0036585.1 MGP_CASTEiJ_G0019792.1 mouse_genomes_project 13 47258339 47349515 - MGP_CASTEiJ_P0036585 Fam120a protein_coding protein_coding MGP_CASTEiJ_T0036586.1 MGP_CASTEiJ_G0019792.1 mouse_genomes_project 13 47264770 47349433 - MGP_CASTEiJ_P0036586 Fam120a protein_coding unknown_likely_coding MGP_CASTEiJ_T0036146.1 MGP_CASTEiJ_G0019620.1 mouse_genomes_project 13 20605040 20605431 - MGP_CASTEiJ_P0036146 Hist1h4f protein_coding protein_coding MGP_CASTEiJ_T0036252.1 MGP_CASTEiJ_G0019664.1 mouse_genomes_project 13 24441284 24466111 + MGP_CASTEiJ_P0036252 Prl3a1 protein_coding protein_coding MGP_CASTEiJ_T0037056.1 MGP_CASTEiJ_G0019934.1 mouse_genomes_project 13 62747042 62808109 - MGP_CASTEiJ_P0037056 Ptch1 protein_coding protein_coding MGP_CASTEiJ_T0037057.1 MGP_CASTEiJ_G0019934.1 mouse_genomes_project 13 62747043 62815783 - MGP_CASTEiJ_P0037057 Ptch1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037058.1 MGP_CASTEiJ_G0019934.1 mouse_genomes_project 13 62752458 62753205 - Ptch1 protein_coding retained_intron MGP_CASTEiJ_T0037059.1 MGP_CASTEiJ_G0019934.1 mouse_genomes_project 13 62756775 62806131 - MGP_CASTEiJ_P0037059 Ptch1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037060.1 MGP_CASTEiJ_G0019934.1 mouse_genomes_project 13 62781939 62807590 - MGP_CASTEiJ_P0037060 Ptch1 protein_coding protein_coding MGP_CASTEiJ_T0037061.1 MGP_CASTEiJ_G0019934.1 mouse_genomes_project 13 62781939 62806642 - MGP_CASTEiJ_P0037061 Ptch1 protein_coding protein_coding MGP_CASTEiJ_T0037062.1 MGP_CASTEiJ_G0019934.1 mouse_genomes_project 13 62781939 62815921 - MGP_CASTEiJ_P0037062 Ptch1 protein_coding protein_coding MGP_CASTEiJ_T0035910.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6225684 6314065 - MGP_CASTEiJ_P0035910 Zmynd11 protein_coding protein_coding MGP_CASTEiJ_T0035911.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6225684 6314887 - MGP_CASTEiJ_P0035911 Zmynd11 protein_coding protein_coding MGP_CASTEiJ_T0035912.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6225684 6314000 - MGP_CASTEiJ_P0035912 Zmynd11 protein_coding protein_coding MGP_CASTEiJ_T0035913.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6225686 6314733 - MGP_CASTEiJ_P0035913 Zmynd11 protein_coding protein_coding MGP_CASTEiJ_T0035914.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6225689 6232148 - Zmynd11 protein_coding retained_intron MGP_CASTEiJ_T0035915.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6225689 6314047 - MGP_CASTEiJ_P0035915 Zmynd11 protein_coding protein_coding MGP_CASTEiJ_T0035916.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6225943 6314529 - MGP_CASTEiJ_P0035916 Zmynd11 protein_coding protein_coding MGP_CASTEiJ_T0035917.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6229993 6231385 - Zmynd11 protein_coding retained_intron MGP_CASTEiJ_T0035918.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6234357 6237023 - Zmynd11 protein_coding retained_intron MGP_CASTEiJ_T0035919.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6235169 6314843 - MGP_CASTEiJ_P0035919 Zmynd11 protein_coding protein_coding MGP_CASTEiJ_T0035920.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6236015 6314021 - MGP_CASTEiJ_P0035920 Zmynd11 protein_coding protein_coding MGP_CASTEiJ_T0035921.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6238515 6314894 - MGP_CASTEiJ_P0035921 Zmynd11 protein_coding protein_coding MGP_CASTEiJ_T0035922.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6238515 6314510 - MGP_CASTEiJ_P0035922 Zmynd11 protein_coding protein_coding MGP_CASTEiJ_T0035923.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6238534 6281347 - Zmynd11 protein_coding processed_transcript MGP_CASTEiJ_T0035924.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6238571 6280985 - Zmynd11 protein_coding processed_transcript MGP_CASTEiJ_T0035925.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6238574 6313995 - MGP_CASTEiJ_P0035925 Zmynd11 protein_coding protein_coding MGP_CASTEiJ_T0035926.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6239529 6281455 - MGP_CASTEiJ_P0035926 Zmynd11 protein_coding protein_coding MGP_CASTEiJ_T0035927.1 MGP_CASTEiJ_G0019506.1 mouse_genomes_project 13 6250475 6314031 - MGP_CASTEiJ_P0035927 Zmynd11 protein_coding protein_coding MGP_CASTEiJ_T0036620.1 MGP_CASTEiJ_G0019801.1 mouse_genomes_project 13 47918576 47945248 + MGP_CASTEiJ_P0036620 Ecm2 protein_coding protein_coding MGP_CASTEiJ_T0036852.1 MGP_CASTEiJ_G0019863.1 mouse_genomes_project 13 54427448 54448024 - MGP_CASTEiJ_P0036852 Pdlim7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036853.1 MGP_CASTEiJ_G0019863.1 mouse_genomes_project 13 54431060 54448020 - Pdlim7 protein_coding retained_intron MGP_CASTEiJ_T0036854.1 MGP_CASTEiJ_G0019863.1 mouse_genomes_project 13 54431961 54448023 - Pdlim7 protein_coding retained_intron MGP_CASTEiJ_T0036855.1 MGP_CASTEiJ_G0019863.1 mouse_genomes_project 13 54431965 54448032 - MGP_CASTEiJ_P0036855 Pdlim7 protein_coding protein_coding MGP_CASTEiJ_T0036856.1 MGP_CASTEiJ_G0019863.1 mouse_genomes_project 13 54432204 54440948 - MGP_CASTEiJ_P0036856 Pdlim7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036857.1 MGP_CASTEiJ_G0019863.1 mouse_genomes_project 13 54441301 54448183 - MGP_CASTEiJ_P0036857 Pdlim7 protein_coding protein_coding MGP_CASTEiJ_T0036858.1 MGP_CASTEiJ_G0019863.1 mouse_genomes_project 13 54441308 54448020 - MGP_CASTEiJ_P0036858 Pdlim7 protein_coding protein_coding MGP_CASTEiJ_T0036859.1 MGP_CASTEiJ_G0019863.1 mouse_genomes_project 13 54442088 54443601 - Pdlim7 protein_coding retained_intron MGP_CASTEiJ_T0036860.1 MGP_CASTEiJ_G0019863.1 mouse_genomes_project 13 54442767 54448262 - MGP_CASTEiJ_P0036860 Pdlim7 protein_coding protein_coding MGP_CASTEiJ_T0036861.1 MGP_CASTEiJ_G0019863.1 mouse_genomes_project 13 54443390 54448007 - Pdlim7 protein_coding retained_intron MGP_CASTEiJ_T0036862.1 MGP_CASTEiJ_G0019863.1 mouse_genomes_project 13 54443546 54447295 - MGP_CASTEiJ_P0036862 Pdlim7 protein_coding protein_coding MGP_CASTEiJ_T0012530.1 MGP_CASTEiJ_G0010693.1 mouse_genomes_project 13 21576050 21576384 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035850.1 MGP_CASTEiJ_G0019493.1 mouse_genomes_project 13 1106138 1123956 - MGP_CASTEiJ_P0035850 Akr1e1 protein_coding protein_coding MGP_CASTEiJ_T0035851.1 MGP_CASTEiJ_G0019493.1 mouse_genomes_project 13 1108023 1123956 - MGP_CASTEiJ_P0035851 Akr1e1 protein_coding protein_coding MGP_CASTEiJ_T0035852.1 MGP_CASTEiJ_G0019493.1 mouse_genomes_project 13 1116832 1123916 - Akr1e1 protein_coding processed_transcript MGP_CASTEiJ_T0012522.1 MGP_CASTEiJ_G0010685.1 mouse_genomes_project 13 19765270 19766580 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016627.1 MGP_CASTEiJ_G0014577.1 mouse_genomes_project 13 120690891 120693858 - Gm9752 processed_transcript processed_transcript MGP_CASTEiJ_T0036358.1 MGP_CASTEiJ_G0019711.1 mouse_genomes_project 13 31523897 31561446 + MGP_CASTEiJ_P0036358 Bphl protein_coding protein_coding MGP_CASTEiJ_T0036443.1 MGP_CASTEiJ_G0019743.1 mouse_genomes_project 13 38540334 38559513 - MGP_CASTEiJ_P0036443 Tfap2a protein_coding unknown_likely_coding MGP_CASTEiJ_T0036444.1 MGP_CASTEiJ_G0019743.1 mouse_genomes_project 13 38545036 38565066 - MGP_CASTEiJ_P0036444 Tfap2a protein_coding protein_coding MGP_CASTEiJ_T0036445.1 MGP_CASTEiJ_G0019743.1 mouse_genomes_project 13 38545036 38559675 - MGP_CASTEiJ_P0036445 Tfap2a protein_coding protein_coding MGP_CASTEiJ_T0037764.1 MGP_CASTEiJ_G0020168.1 mouse_genomes_project 13 104948830 105140064 - MGP_CASTEiJ_P0037764 Cwc27 protein_coding protein_coding MGP_CASTEiJ_T0037765.1 MGP_CASTEiJ_G0020168.1 mouse_genomes_project 13 105059473 105109495 - Cwc27 protein_coding processed_transcript MGP_CASTEiJ_T0037766.1 MGP_CASTEiJ_G0020168.1 mouse_genomes_project 13 105107192 105109530 - Cwc27 protein_coding processed_transcript MGP_CASTEiJ_T0037767.1 MGP_CASTEiJ_G0020168.1 mouse_genomes_project 13 105128177 105140253 - MGP_CASTEiJ_P0037767 Cwc27 protein_coding protein_coding MGP_CASTEiJ_T0100594.1 MGP_CASTEiJ_G0037507.1 mouse_genomes_project 13 119197388 119197518 + Gm26349 snoRNA snoRNA MGP_CASTEiJ_T0009684.1 MGP_CASTEiJ_G0007872.1 mouse_genomes_project 13 57089489 57089565 - Mir874 miRNA miRNA MGP_CASTEiJ_T0037087.1 MGP_CASTEiJ_G0019941.1 mouse_genomes_project 13 63573983 63597842 - MGP_CASTEiJ_P0037087 Aaed1 protein_coding protein_coding MGP_CASTEiJ_T0036545.1 MGP_CASTEiJ_G0019779.1 mouse_genomes_project 13 44881577 44932291 - MGP_CASTEiJ_P0036545 Nup153 protein_coding protein_coding MGP_CASTEiJ_T0036546.1 MGP_CASTEiJ_G0019779.1 mouse_genomes_project 13 44884047 44884925 - Nup153 protein_coding retained_intron MGP_CASTEiJ_T0036547.1 MGP_CASTEiJ_G0019779.1 mouse_genomes_project 13 44885810 44886983 - Nup153 protein_coding retained_intron MGP_CASTEiJ_T0036548.1 MGP_CASTEiJ_G0019779.1 mouse_genomes_project 13 44903263 44905745 - Nup153 protein_coding retained_intron MGP_CASTEiJ_T0036549.1 MGP_CASTEiJ_G0019779.1 mouse_genomes_project 13 44913491 44920848 - Nup153 protein_coding processed_transcript MGP_CASTEiJ_T0012592.1 MGP_CASTEiJ_G0010755.1 mouse_genomes_project 13 106931172 106931418 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037901.1 MGP_CASTEiJ_G0020214.1 mouse_genomes_project 13 115293868 115300303 - MGP_CASTEiJ_P0037901 Fst protein_coding protein_coding MGP_CASTEiJ_T0037902.1 MGP_CASTEiJ_G0020214.1 mouse_genomes_project 13 115295030 115300159 - MGP_CASTEiJ_P0037902 Fst protein_coding unknown_likely_coding MGP_CASTEiJ_T0003394.1 MGP_CASTEiJ_G0003102.1 mouse_genomes_project 13 118813952 118830716 - 4933413L06Rik antisense antisense MGP_CASTEiJ_T0003395.1 MGP_CASTEiJ_G0003102.1 mouse_genomes_project 13 118814215 118830692 - 4933413L06Rik antisense antisense MGP_CASTEiJ_T0036863.1 MGP_CASTEiJ_G0019864.1 mouse_genomes_project 13 54457813 54463153 - MGP_CASTEiJ_P0036863 Dok3 protein_coding protein_coding MGP_CASTEiJ_T0006350.1 MGP_CASTEiJ_G0005287.1 mouse_genomes_project 13 23063605 23077791 - Gm11351 lincRNA lincRNA MGP_CASTEiJ_T0012508.1 MGP_CASTEiJ_G0010671.1 mouse_genomes_project 13 8521759 8522748 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036259.1 MGP_CASTEiJ_G0019668.1 mouse_genomes_project 13 24619913 24626886 - MGP_CASTEiJ_P0036259 Prl8a6 protein_coding protein_coding MGP_CASTEiJ_T0036260.1 MGP_CASTEiJ_G0019668.1 mouse_genomes_project 13 24619913 24626846 - MGP_CASTEiJ_P0036260 Prl8a6 protein_coding protein_coding MGP_CASTEiJ_T0036261.1 MGP_CASTEiJ_G0019668.1 mouse_genomes_project 13 24620099 24626795 - MGP_CASTEiJ_P0036261 Prl8a6 protein_coding protein_coding MGP_CASTEiJ_T0037515.1 MGP_CASTEiJ_G0020093.1 mouse_genomes_project 13 93645241 93786788 + MGP_CASTEiJ_P0037515 Lhfpl2 protein_coding protein_coding MGP_CASTEiJ_T0037516.1 MGP_CASTEiJ_G0020093.1 mouse_genomes_project 13 93645277 93714276 + Lhfpl2 protein_coding retained_intron MGP_CASTEiJ_T0037517.1 MGP_CASTEiJ_G0020093.1 mouse_genomes_project 13 93670012 93764990 + MGP_CASTEiJ_P0037517 Lhfpl2 protein_coding protein_coding MGP_CASTEiJ_T0037518.1 MGP_CASTEiJ_G0020093.1 mouse_genomes_project 13 93725061 93764676 + MGP_CASTEiJ_P0037518 Lhfpl2 protein_coding protein_coding MGP_CASTEiJ_T0037519.1 MGP_CASTEiJ_G0020093.1 mouse_genomes_project 13 93763147 93785896 + MGP_CASTEiJ_P0037519 Lhfpl2 protein_coding protein_coding MGP_CASTEiJ_T0037520.1 MGP_CASTEiJ_G0020093.1 mouse_genomes_project 13 93764123 93764563 + Lhfpl2 protein_coding processed_transcript MGP_CASTEiJ_T0037521.1 MGP_CASTEiJ_G0020093.1 mouse_genomes_project 13 93764341 93786788 + MGP_CASTEiJ_P0037521 Lhfpl2 protein_coding protein_coding MGP_CASTEiJ_T0036303.1 MGP_CASTEiJ_G0019689.1 mouse_genomes_project 13 28393893 28395666 + MGP_CASTEiJ_P0036303 Gm5447 protein_coding protein_coding MGP_CASTEiJ_T0036539.1 MGP_CASTEiJ_G0019775.1 mouse_genomes_project 13 44466760 44494649 + MGP_CASTEiJ_P0036539 Stmnd1 protein_coding protein_coding MGP_CASTEiJ_T0037712.1 MGP_CASTEiJ_G0020157.1 mouse_genomes_project 13 102916122 102929134 + MGP_CASTEiJ_P0037712 Cd180 protein_coding protein_coding MGP_CASTEiJ_T0037713.1 MGP_CASTEiJ_G0020157.1 mouse_genomes_project 13 102916129 102926442 + MGP_CASTEiJ_P0037713 Cd180 protein_coding protein_coding MGP_CASTEiJ_T0037714.1 MGP_CASTEiJ_G0020157.1 mouse_genomes_project 13 102916137 102927266 + MGP_CASTEiJ_P0037714 Cd180 protein_coding protein_coding MGP_CASTEiJ_T0037715.1 MGP_CASTEiJ_G0020157.1 mouse_genomes_project 13 102916143 102966448 + MGP_CASTEiJ_P0037715 Cd180 protein_coding protein_coding MGP_CASTEiJ_T0037716.1 MGP_CASTEiJ_G0020157.1 mouse_genomes_project 13 102916175 102966323 + MGP_CASTEiJ_P0037716 Cd180 protein_coding protein_coding MGP_CASTEiJ_T0100553.1 MGP_CASTEiJ_G0037466.1 mouse_genomes_project 13 5468403 5468538 - Gm25274 snoRNA snoRNA MGP_CASTEiJ_T0002413.1 MGP_CASTEiJ_G0002330.1 mouse_genomes_project 13 16318918 16327361 + MGP_CASTEiJ_P0002413 Tcrg-C4 TR_C_gene TR_C_gene MGP_CASTEiJ_T0006456.1 MGP_CASTEiJ_G0005358.1 mouse_genomes_project 13 99434860 99439720 - lincRNA lincRNA MGP_CASTEiJ_T0036128.1 MGP_CASTEiJ_G0019606.1 mouse_genomes_project 13 20022528 20025082 + MGP_CASTEiJ_P0036128 Vmn1r214 protein_coding protein_coding MGP_CASTEiJ_T0036417.1 MGP_CASTEiJ_G0019731.1 mouse_genomes_project 13 35665235 35689080 - MGP_CASTEiJ_P0036417 Ssr1 protein_coding protein_coding MGP_CASTEiJ_T0036418.1 MGP_CASTEiJ_G0019731.1 mouse_genomes_project 13 35684305 35688978 - MGP_CASTEiJ_P0036418 Ssr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035959.1 MGP_CASTEiJ_G0019522.1 mouse_genomes_project 13 10829445 10869656 - MGP_CASTEiJ_P0035959 Tbce protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035960.1 MGP_CASTEiJ_G0019522.1 mouse_genomes_project 13 10829447 10833049 - Tbce protein_coding retained_intron MGP_CASTEiJ_T0035961.1 MGP_CASTEiJ_G0019522.1 mouse_genomes_project 13 10829447 10837088 - Tbce protein_coding retained_intron MGP_CASTEiJ_T0035962.1 MGP_CASTEiJ_G0019522.1 mouse_genomes_project 13 10829448 10869715 - MGP_CASTEiJ_P0035962 Tbce protein_coding protein_coding MGP_CASTEiJ_T0035963.1 MGP_CASTEiJ_G0019522.1 mouse_genomes_project 13 10829449 10869715 - MGP_CASTEiJ_P0035963 Tbce protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035964.1 MGP_CASTEiJ_G0019522.1 mouse_genomes_project 13 10834629 10869698 - Tbce protein_coding retained_intron MGP_CASTEiJ_T0035965.1 MGP_CASTEiJ_G0019522.1 mouse_genomes_project 13 10836772 10841436 - Tbce protein_coding retained_intron MGP_CASTEiJ_T0035966.1 MGP_CASTEiJ_G0019522.1 mouse_genomes_project 13 10836810 10840643 - Tbce protein_coding retained_intron MGP_CASTEiJ_T0035967.1 MGP_CASTEiJ_G0019522.1 mouse_genomes_project 13 10836817 10841429 - Tbce protein_coding retained_intron MGP_CASTEiJ_T0035968.1 MGP_CASTEiJ_G0019522.1 mouse_genomes_project 13 10836825 10841095 - Tbce protein_coding processed_transcript MGP_CASTEiJ_T0035969.1 MGP_CASTEiJ_G0019522.1 mouse_genomes_project 13 10841972 10869689 - Tbce protein_coding retained_intron MGP_CASTEiJ_T0035970.1 MGP_CASTEiJ_G0019522.1 mouse_genomes_project 13 10846168 10869673 - Tbce protein_coding retained_intron MGP_CASTEiJ_T0035971.1 MGP_CASTEiJ_G0019522.1 mouse_genomes_project 13 10851115 10869694 - Tbce protein_coding retained_intron MGP_CASTEiJ_T0006414.1 MGP_CASTEiJ_G0005329.1 mouse_genomes_project 13 55203132 55224682 - 4930550C17Rik lincRNA lincRNA MGP_CASTEiJ_T0006455.1 MGP_CASTEiJ_G0005357.1 mouse_genomes_project 13 99106917 99115430 + Gm807 lincRNA lincRNA MGP_CASTEiJ_T0036133.1 MGP_CASTEiJ_G0019611.1 mouse_genomes_project 13 20135015 20135912 + MGP_CASTEiJ_P0036133 Vmn1r218 protein_coding protein_coding MGP_CASTEiJ_T0037753.1 MGP_CASTEiJ_G0020164.1 mouse_genomes_project 13 104445254 104500229 - MGP_CASTEiJ_P0037753 Ppwd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037758.1 MGP_CASTEiJ_G0020164.1 mouse_genomes_project 13 104476037 104500248 - MGP_CASTEiJ_P0037758 Ppwd1 protein_coding protein_coding MGP_CASTEiJ_T0037554.1 MGP_CASTEiJ_G0020104.1 mouse_genomes_project 13 95157334 95158694 - MGP_CASTEiJ_P0037554 S100z protein_coding protein_coding MGP_CASTEiJ_T0036319.1 MGP_CASTEiJ_G0019699.1 mouse_genomes_project 13 30415271 30426273 - MGP_CASTEiJ_P0036319 Serpinb1c protein_coding protein_coding MGP_CASTEiJ_T0036320.1 MGP_CASTEiJ_G0019699.1 mouse_genomes_project 13 30417445 30426250 - MGP_CASTEiJ_P0036320 Serpinb1c protein_coding protein_coding MGP_CASTEiJ_T0035856.1 MGP_CASTEiJ_G0019497.1 mouse_genomes_project 13 3102398 3134254 + MGP_CASTEiJ_P0035856 Pitrm1 protein_coding protein_coding MGP_CASTEiJ_T0035857.1 MGP_CASTEiJ_G0019497.1 mouse_genomes_project 13 3102415 3133877 + MGP_CASTEiJ_P0035857 Pitrm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006411.1 MGP_CASTEiJ_G0005327.1 mouse_genomes_project 13 53807520 53814394 - lincRNA lincRNA MGP_CASTEiJ_T0036623.1 MGP_CASTEiJ_G0019803.1 mouse_genomes_project 13 48000051 48011002 + MGP_CASTEiJ_P0036623 Omd protein_coding protein_coding MGP_CASTEiJ_T0036130.1 MGP_CASTEiJ_G0019608.1 mouse_genomes_project 13 20091993 20092890 + MGP_CASTEiJ_P0036130 Vmn1r216 protein_coding protein_coding MGP_CASTEiJ_T0036867.1 MGP_CASTEiJ_G0019868.1 mouse_genomes_project 13 54538343 54548881 + MGP_CASTEiJ_P0036867 B4galt7 protein_coding protein_coding MGP_CASTEiJ_T0036868.1 MGP_CASTEiJ_G0019868.1 mouse_genomes_project 13 54538512 54546454 + B4galt7 protein_coding retained_intron MGP_CASTEiJ_T0036869.1 MGP_CASTEiJ_G0019868.1 mouse_genomes_project 13 54538512 54547238 + MGP_CASTEiJ_P0036869 B4galt7 protein_coding protein_coding MGP_CASTEiJ_T0036870.1 MGP_CASTEiJ_G0019868.1 mouse_genomes_project 13 54538512 54548880 + MGP_CASTEiJ_P0036870 B4galt7 protein_coding protein_coding MGP_CASTEiJ_T0098335.1 MGP_CASTEiJ_G0035266.1 mouse_genomes_project 13 45235681 45236200 + pseudogene pseudogene MGP_CASTEiJ_T0036401.1 MGP_CASTEiJ_G0019728.1 mouse_genomes_project 13 34474483 34663438 - MGP_CASTEiJ_P0036401 F13a1 protein_coding protein_coding MGP_CASTEiJ_T0036402.1 MGP_CASTEiJ_G0019728.1 mouse_genomes_project 13 34474483 34664433 - MGP_CASTEiJ_P0036402 F13a1 protein_coding protein_coding MGP_CASTEiJ_T0036403.1 MGP_CASTEiJ_G0019728.1 mouse_genomes_project 13 34478037 34602778 - MGP_CASTEiJ_P0036403 F13a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036736.1 MGP_CASTEiJ_G0019835.1 mouse_genomes_project 13 53442357 53448495 - MGP_CASTEiJ_P0036736 Nop16 protein_coding protein_coding MGP_CASTEiJ_T0036737.1 MGP_CASTEiJ_G0019835.1 mouse_genomes_project 13 53442707 53448463 - MGP_CASTEiJ_P0036737 Nop16 protein_coding protein_coding MGP_CASTEiJ_T0036738.1 MGP_CASTEiJ_G0019835.1 mouse_genomes_project 13 53443413 53448381 - MGP_CASTEiJ_P0036738 Nop16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098495.1 MGP_CASTEiJ_G0035426.1 mouse_genomes_project 13 20734599 20734707 - Gm24991 rRNA rRNA MGP_CASTEiJ_T0037124.1 MGP_CASTEiJ_G0019960.1 mouse_genomes_project 13 65703430 65719682 - MGP_CASTEiJ_P0037124 protein_coding protein_coding MGP_CASTEiJ_T0037128.1 MGP_CASTEiJ_G0019960.1 mouse_genomes_project 13 65703433 65719715 - MGP_CASTEiJ_P0037128 protein_coding protein_coding MGP_CASTEiJ_T0036678.1 MGP_CASTEiJ_G0019818.1 mouse_genomes_project 13 50477033 50482815 + MGP_CASTEiJ_P0036678 Gadd45g protein_coding unknown_likely_coding MGP_CASTEiJ_T0036679.1 MGP_CASTEiJ_G0019818.1 mouse_genomes_project 13 50481011 50482800 + MGP_CASTEiJ_P0036679 Gadd45g protein_coding protein_coding MGP_CASTEiJ_T0036680.1 MGP_CASTEiJ_G0019818.1 mouse_genomes_project 13 50481077 50482556 + Gadd45g protein_coding retained_intron MGP_CASTEiJ_T0036242.1 MGP_CASTEiJ_G0019657.1 mouse_genomes_project 13 23940708 23942678 - MGP_CASTEiJ_P0036242 Hdgfl1 protein_coding protein_coding MGP_CASTEiJ_T0037027.1 MGP_CASTEiJ_G0019925.1 mouse_genomes_project 13 60648412 60654092 - MGP_CASTEiJ_P0037027 Cts7 protein_coding protein_coding MGP_CASTEiJ_T0035995.1 MGP_CASTEiJ_G0019531.1 mouse_genomes_project 13 14568068 14570106 + MGP_CASTEiJ_P0035995 protein_coding protein_coding MGP_CASTEiJ_T0012507.1 MGP_CASTEiJ_G0010670.1 mouse_genomes_project 13 5757756 5759063 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009663.1 MGP_CASTEiJ_G0007851.1 mouse_genomes_project 13 18507334 18507415 + Mir1896 miRNA miRNA MGP_CASTEiJ_T0012551.1 MGP_CASTEiJ_G0010714.1 mouse_genomes_project 13 31492593 31493959 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037125.1 MGP_CASTEiJ_G0019961.1 mouse_genomes_project 13 65703431 65735353 - protein_coding processed_transcript MGP_CASTEiJ_T0037126.1 MGP_CASTEiJ_G0019961.1 mouse_genomes_project 13 65703431 65745982 - MGP_CASTEiJ_P0037126 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037127.1 MGP_CASTEiJ_G0019961.1 mouse_genomes_project 13 65703432 65735438 - MGP_CASTEiJ_P0037127 protein_coding protein_coding MGP_CASTEiJ_T0037130.1 MGP_CASTEiJ_G0019961.1 mouse_genomes_project 13 65742833 65746037 - protein_coding processed_transcript MGP_CASTEiJ_T0037529.1 MGP_CASTEiJ_G0020099.1 mouse_genomes_project 13 94618652 94669655 + MGP_CASTEiJ_P0037529 Wdr41 protein_coding protein_coding MGP_CASTEiJ_T0037530.1 MGP_CASTEiJ_G0020099.1 mouse_genomes_project 13 94618652 94669656 + MGP_CASTEiJ_P0037530 Wdr41 protein_coding protein_coding MGP_CASTEiJ_T0037531.1 MGP_CASTEiJ_G0020099.1 mouse_genomes_project 13 94618742 94660885 + MGP_CASTEiJ_P0037531 Wdr41 protein_coding protein_coding MGP_CASTEiJ_T0037532.1 MGP_CASTEiJ_G0020099.1 mouse_genomes_project 13 94618742 94660885 + MGP_CASTEiJ_P0037532 Wdr41 protein_coding protein_coding MGP_CASTEiJ_T0037533.1 MGP_CASTEiJ_G0020099.1 mouse_genomes_project 13 94618843 94642279 + MGP_CASTEiJ_P0037533 Wdr41 protein_coding protein_coding MGP_CASTEiJ_T0036058.1 MGP_CASTEiJ_G0019557.1 mouse_genomes_project 13 18479805 18501984 - MGP_CASTEiJ_P0036058 Pgbd1 protein_coding protein_coding MGP_CASTEiJ_T0036059.1 MGP_CASTEiJ_G0019557.1 mouse_genomes_project 13 18479808 18501793 - MGP_CASTEiJ_P0036059 Pgbd1 protein_coding protein_coding MGP_CASTEiJ_T0036060.1 MGP_CASTEiJ_G0019557.1 mouse_genomes_project 13 18480376 18502141 - MGP_CASTEiJ_P0036060 Pgbd1 protein_coding protein_coding MGP_CASTEiJ_T0036061.1 MGP_CASTEiJ_G0019557.1 mouse_genomes_project 13 18480376 18502127 - MGP_CASTEiJ_P0036061 Pgbd1 protein_coding protein_coding MGP_CASTEiJ_T0036062.1 MGP_CASTEiJ_G0019557.1 mouse_genomes_project 13 18481714 18501793 - MGP_CASTEiJ_P0036062 Pgbd1 protein_coding protein_coding MGP_CASTEiJ_T0036983.1 MGP_CASTEiJ_G0019903.1 mouse_genomes_project 13 58782819 58797235 + MGP_CASTEiJ_P0036983 Naa35 protein_coding protein_coding MGP_CASTEiJ_T0036984.1 MGP_CASTEiJ_G0019903.1 mouse_genomes_project 13 58782855 58831910 + MGP_CASTEiJ_P0036984 Naa35 protein_coding protein_coding MGP_CASTEiJ_T0036985.1 MGP_CASTEiJ_G0019903.1 mouse_genomes_project 13 58782954 58806248 + MGP_CASTEiJ_P0036985 Naa35 protein_coding protein_coding MGP_CASTEiJ_T0036986.1 MGP_CASTEiJ_G0019903.1 mouse_genomes_project 13 58783732 58821578 + MGP_CASTEiJ_P0036986 Naa35 protein_coding protein_coding MGP_CASTEiJ_T0036987.1 MGP_CASTEiJ_G0019903.1 mouse_genomes_project 13 58792897 58797710 + Naa35 protein_coding retained_intron MGP_CASTEiJ_T0036988.1 MGP_CASTEiJ_G0019903.1 mouse_genomes_project 13 58795594 58814921 + MGP_CASTEiJ_P0036988 Naa35 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036989.1 MGP_CASTEiJ_G0019903.1 mouse_genomes_project 13 58806693 58824730 + Naa35 protein_coding retained_intron MGP_CASTEiJ_T0036990.1 MGP_CASTEiJ_G0019903.1 mouse_genomes_project 13 58806818 58822509 + Naa35 protein_coding retained_intron MGP_CASTEiJ_T0036991.1 MGP_CASTEiJ_G0019903.1 mouse_genomes_project 13 58806853 58822535 + Naa35 protein_coding retained_intron MGP_CASTEiJ_T0036992.1 MGP_CASTEiJ_G0019903.1 mouse_genomes_project 13 58806938 58821650 + MGP_CASTEiJ_P0036992 Naa35 protein_coding protein_coding MGP_CASTEiJ_T0036993.1 MGP_CASTEiJ_G0019903.1 mouse_genomes_project 13 58814887 58831870 + Naa35 protein_coding processed_transcript MGP_CASTEiJ_T0036994.1 MGP_CASTEiJ_G0019903.1 mouse_genomes_project 13 58814937 58822725 + Naa35 protein_coding retained_intron MGP_CASTEiJ_T0036995.1 MGP_CASTEiJ_G0019903.1 mouse_genomes_project 13 58814938 58825047 + MGP_CASTEiJ_P0036995 Naa35 protein_coding protein_coding MGP_CASTEiJ_T0036996.1 MGP_CASTEiJ_G0019903.1 mouse_genomes_project 13 58821504 58826035 + Naa35 protein_coding retained_intron MGP_CASTEiJ_T0036997.1 MGP_CASTEiJ_G0019903.1 mouse_genomes_project 13 58829842 58831757 + Naa35 protein_coding retained_intron MGP_CASTEiJ_T0036702.1 MGP_CASTEiJ_G0019823.1 mouse_genomes_project 13 51828613 52017925 - MGP_CASTEiJ_P0036702 Ror2 protein_coding protein_coding MGP_CASTEiJ_T0036703.1 MGP_CASTEiJ_G0019823.1 mouse_genomes_project 13 51828618 52018502 - MGP_CASTEiJ_P0036703 Ror2 protein_coding protein_coding MGP_CASTEiJ_T0036704.1 MGP_CASTEiJ_G0019823.1 mouse_genomes_project 13 51853785 52008127 - Ror2 protein_coding processed_transcript MGP_CASTEiJ_T0012563.1 MGP_CASTEiJ_G0010726.1 mouse_genomes_project 13 63213026 63213670 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099367.1 MGP_CASTEiJ_G0036280.1 mouse_genomes_project 13 120961574 120961685 + Gm23308 snRNA snRNA MGP_CASTEiJ_T0098493.1 MGP_CASTEiJ_G0035424.1 mouse_genomes_project 13 148798 148912 + Gm23084 rRNA rRNA MGP_CASTEiJ_T0012593.1 MGP_CASTEiJ_G0010756.1 mouse_genomes_project 13 111999719 112000192 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036664.1 MGP_CASTEiJ_G0019817.1 mouse_genomes_project 13 50320387 50423241 - MGP_CASTEiJ_P0036664 Sema4d protein_coding protein_coding MGP_CASTEiJ_T0036665.1 MGP_CASTEiJ_G0019817.1 mouse_genomes_project 13 50320387 50423167 - MGP_CASTEiJ_P0036665 Sema4d protein_coding protein_coding MGP_CASTEiJ_T0036666.1 MGP_CASTEiJ_G0019817.1 mouse_genomes_project 13 50320391 50357372 - MGP_CASTEiJ_P0036666 Sema4d protein_coding protein_coding MGP_CASTEiJ_T0036667.1 MGP_CASTEiJ_G0019817.1 mouse_genomes_project 13 50321696 50423003 - MGP_CASTEiJ_P0036667 Sema4d protein_coding unknown_likely_coding MGP_CASTEiJ_T0036668.1 MGP_CASTEiJ_G0019817.1 mouse_genomes_project 13 50333090 50337504 - Sema4d protein_coding retained_intron MGP_CASTEiJ_T0036669.1 MGP_CASTEiJ_G0019817.1 mouse_genomes_project 13 50346581 50374014 - Sema4d protein_coding processed_transcript MGP_CASTEiJ_T0036670.1 MGP_CASTEiJ_G0019817.1 mouse_genomes_project 13 50346581 50373910 - Sema4d protein_coding processed_transcript MGP_CASTEiJ_T0036671.1 MGP_CASTEiJ_G0019817.1 mouse_genomes_project 13 50348149 50377302 - Sema4d protein_coding processed_transcript MGP_CASTEiJ_T0036672.1 MGP_CASTEiJ_G0019817.1 mouse_genomes_project 13 50348196 50379910 - Sema4d protein_coding processed_transcript MGP_CASTEiJ_T0036673.1 MGP_CASTEiJ_G0019817.1 mouse_genomes_project 13 50348216 50382079 - Sema4d protein_coding processed_transcript MGP_CASTEiJ_T0036674.1 MGP_CASTEiJ_G0019817.1 mouse_genomes_project 13 50348239 50381945 - Sema4d protein_coding processed_transcript MGP_CASTEiJ_T0036675.1 MGP_CASTEiJ_G0019817.1 mouse_genomes_project 13 50348266 50373821 - Sema4d protein_coding processed_transcript MGP_CASTEiJ_T0036676.1 MGP_CASTEiJ_G0019817.1 mouse_genomes_project 13 50348315 50403818 - Sema4d protein_coding processed_transcript MGP_CASTEiJ_T0036677.1 MGP_CASTEiJ_G0019817.1 mouse_genomes_project 13 50348348 50423158 - Sema4d protein_coding processed_transcript MGP_CASTEiJ_T0035846.1 MGP_CASTEiJ_G0019491.1 mouse_genomes_project 13 982463 1024065 - MGP_CASTEiJ_P0035846 Akr1c20 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035847.1 MGP_CASTEiJ_G0019491.1 mouse_genomes_project 13 1006824 1024095 - MGP_CASTEiJ_P0035847 Akr1c20 protein_coding protein_coding MGP_CASTEiJ_T0037201.1 MGP_CASTEiJ_G0020000.1 mouse_genomes_project 13 68487919 68494468 + MGP_CASTEiJ_P0037201 Med10 protein_coding protein_coding MGP_CASTEiJ_T0036333.1 MGP_CASTEiJ_G0019707.1 mouse_genomes_project 13 31364503 31386320 - MGP_CASTEiJ_P0036333 Serpinb6c protein_coding protein_coding MGP_CASTEiJ_T0036334.1 MGP_CASTEiJ_G0019707.1 mouse_genomes_project 13 31364504 31386864 - MGP_CASTEiJ_P0036334 Serpinb6c protein_coding protein_coding MGP_CASTEiJ_T0036140.1 MGP_CASTEiJ_G0019615.1 mouse_genomes_project 13 20490310 20490730 + MGP_CASTEiJ_P0036140 Hist1h3d protein_coding protein_coding MGP_CASTEiJ_T0037136.1 MGP_CASTEiJ_G0019966.1 mouse_genomes_project 13 65860843 65870362 + MGP_CASTEiJ_P0037136 protein_coding protein_coding MGP_CASTEiJ_T0012519.1 MGP_CASTEiJ_G0010682.1 mouse_genomes_project 13 19045423 19045979 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035828.1 MGP_CASTEiJ_G0019481.1 mouse_genomes_project 13 345042 346753 + MGP_CASTEiJ_P0035828 Calm4 protein_coding protein_coding MGP_CASTEiJ_T0035829.1 MGP_CASTEiJ_G0019481.1 mouse_genomes_project 13 345167 346464 + MGP_CASTEiJ_P0035829 Calm4 protein_coding protein_coding MGP_CASTEiJ_T0035951.1 MGP_CASTEiJ_G0019515.1 mouse_genomes_project 13 9936135 9936396 - MGP_CASTEiJ_P0035951 Gm11360 protein_coding protein_coding MGP_CASTEiJ_T0036307.1 MGP_CASTEiJ_G0019693.1 mouse_genomes_project 13 29266681 29270636 + MGP_CASTEiJ_P0036307 Foxc1 protein_coding protein_coding MGP_CASTEiJ_T0036145.1 MGP_CASTEiJ_G0019619.1 mouse_genomes_project 13 20595809 20596197 - MGP_CASTEiJ_P0036145 Hist1h2bh protein_coding protein_coding MGP_CASTEiJ_T0036824.1 MGP_CASTEiJ_G0019851.1 mouse_genomes_project 13 54118159 54222606 + MGP_CASTEiJ_P0036824 Nsd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036160.1 MGP_CASTEiJ_G0019630.1 mouse_genomes_project 13 20805497 20805812 - MGP_CASTEiJ_P0036160 protein_coding protein_coding MGP_CASTEiJ_T0002513.1 MGP_CASTEiJ_G0002421.1 mouse_genomes_project 13 16144537 16144981 + MGP_CASTEiJ_P0002513 Tcrg-V5 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002514.1 MGP_CASTEiJ_G0002421.1 mouse_genomes_project 13 16144688 16144981 + MGP_CASTEiJ_P0002514 Tcrg-V5 TR_V_gene TR_V_gene MGP_CASTEiJ_T0036404.1 MGP_CASTEiJ_G0019729.1 mouse_genomes_project 13 34971455 35044910 + MGP_CASTEiJ_P0036404 Ly86 protein_coding protein_coding MGP_CASTEiJ_T0037761.1 MGP_CASTEiJ_G0020167.1 mouse_genomes_project 13 104575650 104735435 + MGP_CASTEiJ_P0037761 Adamts6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037762.1 MGP_CASTEiJ_G0020167.1 mouse_genomes_project 13 104576009 104800985 + MGP_CASTEiJ_P0037762 Adamts6 protein_coding protein_coding MGP_CASTEiJ_T0037763.1 MGP_CASTEiJ_G0020167.1 mouse_genomes_project 13 104748053 104802917 + MGP_CASTEiJ_P0037763 Adamts6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036067.1 MGP_CASTEiJ_G0019561.1 mouse_genomes_project 13 18539399 18545973 + MGP_CASTEiJ_P0036067 Zkscan4 protein_coding protein_coding MGP_CASTEiJ_T0099357.1 MGP_CASTEiJ_G0036270.1 mouse_genomes_project 13 79205856 79205984 + Gm24635 snRNA snRNA MGP_CASTEiJ_T0037953.1 MGP_CASTEiJ_G0020229.1 mouse_genomes_project 13 120680307 120703246 + MGP_CASTEiJ_P0037953 4833420G17Rik protein_coding protein_coding MGP_CASTEiJ_T0009659.1 MGP_CASTEiJ_G0007847.1 mouse_genomes_project 13 5440622 5440725 - Gm22750 miRNA miRNA MGP_CASTEiJ_T0016605.1 MGP_CASTEiJ_G0014565.1 mouse_genomes_project 13 22068692 22072712 + 9330162012Rik processed_transcript processed_transcript MGP_CASTEiJ_T0037605.1 MGP_CASTEiJ_G0020121.1 mouse_genomes_project 13 96970025 96997169 - MGP_CASTEiJ_P0037605 Hexb protein_coding protein_coding MGP_CASTEiJ_T0012506.1 MGP_CASTEiJ_G0010669.1 mouse_genomes_project 13 5673681 5673832 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037440.1 MGP_CASTEiJ_G0020069.1 mouse_genomes_project 13 90726161 90732678 - MGP_CASTEiJ_P0037440 protein_coding protein_coding MGP_CASTEiJ_T0009657.1 MGP_CASTEiJ_G0007845.1 mouse_genomes_project 13 2516517 2516618 - Gm26259 miRNA miRNA MGP_CASTEiJ_T0037088.1 MGP_CASTEiJ_G0019942.1 mouse_genomes_project 13 63647740 63654846 - MGP_CASTEiJ_P0037088 Ctsl protein_coding protein_coding MGP_CASTEiJ_T0036599.1 MGP_CASTEiJ_G0019794.1 mouse_genomes_project 13 47579893 47594141 + MGP_CASTEiJ_P0036599 Ninj1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036600.1 MGP_CASTEiJ_G0019794.1 mouse_genomes_project 13 47579931 47588889 + MGP_CASTEiJ_P0036600 Ninj1 protein_coding protein_coding MGP_CASTEiJ_T0036601.1 MGP_CASTEiJ_G0019794.1 mouse_genomes_project 13 47579942 47588404 + MGP_CASTEiJ_P0036601 Ninj1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036602.1 MGP_CASTEiJ_G0019794.1 mouse_genomes_project 13 47580173 47587569 + Ninj1 protein_coding processed_transcript MGP_CASTEiJ_T0036603.1 MGP_CASTEiJ_G0019794.1 mouse_genomes_project 13 47582697 47588889 + Ninj1 protein_coding processed_transcript MGP_CASTEiJ_T0006384.1 MGP_CASTEiJ_G0005311.1 mouse_genomes_project 13 39966205 39967149 + Gm28707 lincRNA lincRNA MGP_CASTEiJ_T0037123.1 MGP_CASTEiJ_G0019959.1 mouse_genomes_project 13 65675111 65695392 - MGP_CASTEiJ_P0037123 Zfp712 protein_coding protein_coding MGP_CASTEiJ_T0037654.1 MGP_CASTEiJ_G0020141.1 mouse_genomes_project 13 100175595 100184223 + MGP_CASTEiJ_P0037654 Serf1 protein_coding protein_coding MGP_CASTEiJ_T0037655.1 MGP_CASTEiJ_G0020141.1 mouse_genomes_project 13 100175668 100180099 + MGP_CASTEiJ_P0037655 Serf1 protein_coding protein_coding MGP_CASTEiJ_T0037656.1 MGP_CASTEiJ_G0020141.1 mouse_genomes_project 13 100175738 100184556 + MGP_CASTEiJ_P0037656 Serf1 protein_coding protein_coding MGP_CASTEiJ_T0037657.1 MGP_CASTEiJ_G0020141.1 mouse_genomes_project 13 100175924 100184223 + MGP_CASTEiJ_P0037657 Serf1 protein_coding protein_coding MGP_CASTEiJ_T0037658.1 MGP_CASTEiJ_G0020141.1 mouse_genomes_project 13 100175979 100184216 + MGP_CASTEiJ_P0037658 Serf1 protein_coding protein_coding MGP_CASTEiJ_T0003363.1 MGP_CASTEiJ_G0003086.1 mouse_genomes_project 13 72846314 72847525 - Gm15912 antisense antisense MGP_CASTEiJ_T0037096.1 MGP_CASTEiJ_G0019949.1 mouse_genomes_project 13 64351052 64402463 - MGP_CASTEiJ_P0037096 Mfsd14b protein_coding protein_coding MGP_CASTEiJ_T0037097.1 MGP_CASTEiJ_G0019949.1 mouse_genomes_project 13 64351441 64402470 - MGP_CASTEiJ_P0037097 Mfsd14b protein_coding protein_coding MGP_CASTEiJ_T0037098.1 MGP_CASTEiJ_G0019949.1 mouse_genomes_project 13 64352967 64357477 - Mfsd14b protein_coding retained_intron MGP_CASTEiJ_T0037553.1 MGP_CASTEiJ_G0020103.1 mouse_genomes_project 13 95106119 95119287 - MGP_CASTEiJ_P0037553 Crhbp protein_coding protein_coding MGP_CASTEiJ_T0036449.1 MGP_CASTEiJ_G0019745.1 mouse_genomes_project 13 38854613 38868165 + MGP_CASTEiJ_P0036449 Pak1ip1 protein_coding protein_coding MGP_CASTEiJ_T0036450.1 MGP_CASTEiJ_G0019745.1 mouse_genomes_project 13 38854614 38862202 + Pak1ip1 protein_coding retained_intron MGP_CASTEiJ_T0036451.1 MGP_CASTEiJ_G0019745.1 mouse_genomes_project 13 38854828 38868157 + Pak1ip1 protein_coding retained_intron MGP_CASTEiJ_T0036452.1 MGP_CASTEiJ_G0019745.1 mouse_genomes_project 13 38854850 38861850 + Pak1ip1 protein_coding processed_transcript MGP_CASTEiJ_T0036453.1 MGP_CASTEiJ_G0019745.1 mouse_genomes_project 13 38854856 38868169 + Pak1ip1 protein_coding retained_intron MGP_CASTEiJ_T0006440.1 MGP_CASTEiJ_G0005346.1 mouse_genomes_project 13 83177801 83226991 - Gm17750 lincRNA lincRNA MGP_CASTEiJ_T0037273.1 MGP_CASTEiJ_G0020028.1 mouse_genomes_project 13 73208468 73223914 + MGP_CASTEiJ_P0037273 Ccdc127 protein_coding protein_coding MGP_CASTEiJ_T0037274.1 MGP_CASTEiJ_G0020028.1 mouse_genomes_project 13 73208473 73220828 + MGP_CASTEiJ_P0037274 Ccdc127 protein_coding protein_coding MGP_CASTEiJ_T0037275.1 MGP_CASTEiJ_G0020028.1 mouse_genomes_project 13 73208500 73219216 + MGP_CASTEiJ_P0037275 Ccdc127 protein_coding protein_coding MGP_CASTEiJ_T0037276.1 MGP_CASTEiJ_G0020028.1 mouse_genomes_project 13 73208501 73218826 + MGP_CASTEiJ_P0037276 Ccdc127 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037277.1 MGP_CASTEiJ_G0020028.1 mouse_genomes_project 13 73208521 73215180 + MGP_CASTEiJ_P0037277 Ccdc127 protein_coding protein_coding MGP_CASTEiJ_T0037489.1 MGP_CASTEiJ_G0020082.1 mouse_genomes_project 13 92153997 92254236 + MGP_CASTEiJ_P0037489 Serinc5 protein_coding protein_coding MGP_CASTEiJ_T0100565.1 MGP_CASTEiJ_G0037478.1 mouse_genomes_project 13 34264831 34264963 + Gm26395 snoRNA snoRNA MGP_CASTEiJ_T0035840.1 MGP_CASTEiJ_G0019487.1 mouse_genomes_project 13 695464 710055 + MGP_CASTEiJ_P0035840 Akr1c13 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037888.1 MGP_CASTEiJ_G0020206.1 mouse_genomes_project 13 113869386 113880478 - MGP_CASTEiJ_P0037888 Gzma protein_coding protein_coding MGP_CASTEiJ_T0036766.1 MGP_CASTEiJ_G0019840.1 mouse_genomes_project 13 53570442 53608241 + MGP_CASTEiJ_P0036766 Cdhr2 protein_coding protein_coding MGP_CASTEiJ_T0009672.1 MGP_CASTEiJ_G0007860.1 mouse_genomes_project 13 46874376 46874479 - Mirlet7d miRNA miRNA MGP_CASTEiJ_T0012554.1 MGP_CASTEiJ_G0010717.1 mouse_genomes_project 13 42487555 42488535 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035819.1 MGP_CASTEiJ_G0019476.1 mouse_genomes_project 13 19928 49362 + MGP_CASTEiJ_P0035819 Gdi2 protein_coding protein_coding MGP_CASTEiJ_T0035820.1 MGP_CASTEiJ_G0019476.1 mouse_genomes_project 13 20125 47123 + MGP_CASTEiJ_P0035820 Gdi2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006380.1 MGP_CASTEiJ_G0005307.1 mouse_genomes_project 13 35146951 35151553 + Gm29590 lincRNA lincRNA MGP_CASTEiJ_T0037509.1 MGP_CASTEiJ_G0020089.1 mouse_genomes_project 13 93176827 93200314 - MGP_CASTEiJ_P0037509 Gm5096 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037510.1 MGP_CASTEiJ_G0020089.1 mouse_genomes_project 13 93182467 93199932 - Gm5096 protein_coding retained_intron MGP_CASTEiJ_T0002510.1 MGP_CASTEiJ_G0002419.1 mouse_genomes_project 13 16137307 16137840 + MGP_CASTEiJ_P0002510 Tcrg-V4 TR_V_gene TR_V_gene MGP_CASTEiJ_T0036117.1 MGP_CASTEiJ_G0019595.1 mouse_genomes_project 13 19466654 19467557 + MGP_CASTEiJ_P0036117 Vmn1r198 protein_coding protein_coding MGP_CASTEiJ_T0100582.1 MGP_CASTEiJ_G0037495.1 mouse_genomes_project 13 75591103 75591235 - Gm24519 snoRNA snoRNA MGP_CASTEiJ_T0035844.1 MGP_CASTEiJ_G0019489.1 mouse_genomes_project 13 777249 785227 - MGP_CASTEiJ_P0035844 Akr1c12 protein_coding protein_coding MGP_CASTEiJ_T0035845.1 MGP_CASTEiJ_G0019490.1 mouse_genomes_project 13 933407 934022 + protein_coding processed_transcript MGP_CASTEiJ_T0016603.1 MGP_CASTEiJ_G0014563.1 mouse_genomes_project 13 20577176 20581142 - Gm11335 processed_transcript processed_transcript MGP_CASTEiJ_T0003316.1 MGP_CASTEiJ_G0003053.1 mouse_genomes_project 13 6915874 7235209 + antisense antisense MGP_CASTEiJ_T0099347.1 MGP_CASTEiJ_G0036260.1 mouse_genomes_project 13 39816767 39816871 + Gm22157 snRNA snRNA MGP_CASTEiJ_T0006423.1 MGP_CASTEiJ_G0005336.1 mouse_genomes_project 13 68682154 68705761 - 1700084F23Rik lincRNA lincRNA MGP_CASTEiJ_T0006424.1 MGP_CASTEiJ_G0005336.1 mouse_genomes_project 13 68689438 68705245 - 1700084F23Rik lincRNA lincRNA MGP_CASTEiJ_T0036396.1 MGP_CASTEiJ_G0019725.1 mouse_genomes_project 13 33554891 33696897 - MGP_CASTEiJ_P0036396 Lyrm4 protein_coding protein_coding MGP_CASTEiJ_T0036306.1 MGP_CASTEiJ_G0019692.1 mouse_genomes_project 13 29076952 29082545 + MGP_CASTEiJ_P0036306 Foxf2 protein_coding protein_coding MGP_CASTEiJ_T0035835.1 MGP_CASTEiJ_G0019485.1 mouse_genomes_project 13 551750 584428 + MGP_CASTEiJ_P0035835 Akr1c14 protein_coding protein_coding MGP_CASTEiJ_T0035836.1 MGP_CASTEiJ_G0019485.1 mouse_genomes_project 13 564100 584419 + MGP_CASTEiJ_P0035836 Akr1c14 protein_coding protein_coding MGP_CASTEiJ_T0035837.1 MGP_CASTEiJ_G0019485.1 mouse_genomes_project 13 572260 582998 + Akr1c14 protein_coding processed_transcript MGP_CASTEiJ_T0036528.1 MGP_CASTEiJ_G0019771.1 mouse_genomes_project 13 43515129 43539909 + MGP_CASTEiJ_P0036528 Mylip protein_coding protein_coding MGP_CASTEiJ_T0036529.1 MGP_CASTEiJ_G0019771.1 mouse_genomes_project 13 43515303 43579060 + MGP_CASTEiJ_P0036529 Mylip protein_coding unknown_likely_coding MGP_CASTEiJ_T0036808.1 MGP_CASTEiJ_G0019848.1 mouse_genomes_project 13 54006476 54036846 + MGP_CASTEiJ_P0036808 Zfp346 protein_coding protein_coding MGP_CASTEiJ_T0036809.1 MGP_CASTEiJ_G0019848.1 mouse_genomes_project 13 54006479 54023649 + MGP_CASTEiJ_P0036809 Zfp346 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036810.1 MGP_CASTEiJ_G0019848.1 mouse_genomes_project 13 54006482 54034162 + MGP_CASTEiJ_P0036810 Zfp346 protein_coding protein_coding MGP_CASTEiJ_T0036811.1 MGP_CASTEiJ_G0019848.1 mouse_genomes_project 13 54006495 54036619 + MGP_CASTEiJ_P0036811 Zfp346 protein_coding protein_coding MGP_CASTEiJ_T0036812.1 MGP_CASTEiJ_G0019848.1 mouse_genomes_project 13 54006501 54034530 + MGP_CASTEiJ_P0036812 Zfp346 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036813.1 MGP_CASTEiJ_G0019848.1 mouse_genomes_project 13 54006501 54032322 + MGP_CASTEiJ_P0036813 Zfp346 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036814.1 MGP_CASTEiJ_G0019848.1 mouse_genomes_project 13 54006505 54034271 + MGP_CASTEiJ_P0036814 Zfp346 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036815.1 MGP_CASTEiJ_G0019848.1 mouse_genomes_project 13 54006507 54034363 + MGP_CASTEiJ_P0036815 Zfp346 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036816.1 MGP_CASTEiJ_G0019848.1 mouse_genomes_project 13 54006567 54034150 + MGP_CASTEiJ_P0036816 Zfp346 protein_coding protein_coding MGP_CASTEiJ_T0036817.1 MGP_CASTEiJ_G0019848.1 mouse_genomes_project 13 54014076 54014959 + Zfp346 protein_coding retained_intron MGP_CASTEiJ_T0036818.1 MGP_CASTEiJ_G0019848.1 mouse_genomes_project 13 54023186 54034131 + Zfp346 protein_coding retained_intron MGP_CASTEiJ_T0036819.1 MGP_CASTEiJ_G0019848.1 mouse_genomes_project 13 54031947 54034405 + Zfp346 protein_coding retained_intron MGP_CASTEiJ_T0006341.1 MGP_CASTEiJ_G0005279.1 mouse_genomes_project 13 5938242 5942884 + Gm26601 lincRNA lincRNA MGP_CASTEiJ_T0037265.1 MGP_CASTEiJ_G0020027.1 mouse_genomes_project 13 73180772 73208454 - MGP_CASTEiJ_P0037265 Sdha protein_coding protein_coding MGP_CASTEiJ_T0037266.1 MGP_CASTEiJ_G0020027.1 mouse_genomes_project 13 73181250 73182758 - Sdha protein_coding retained_intron MGP_CASTEiJ_T0037267.1 MGP_CASTEiJ_G0020027.1 mouse_genomes_project 13 73185378 73186556 - Sdha protein_coding retained_intron MGP_CASTEiJ_T0037268.1 MGP_CASTEiJ_G0020027.1 mouse_genomes_project 13 73195615 73208376 - Sdha protein_coding processed_transcript MGP_CASTEiJ_T0037269.1 MGP_CASTEiJ_G0020027.1 mouse_genomes_project 13 73197148 73197919 - Sdha protein_coding retained_intron MGP_CASTEiJ_T0037270.1 MGP_CASTEiJ_G0020027.1 mouse_genomes_project 13 73201400 73208413 - Sdha protein_coding retained_intron MGP_CASTEiJ_T0037271.1 MGP_CASTEiJ_G0020027.1 mouse_genomes_project 13 73203017 73208331 - Sdha protein_coding processed_transcript MGP_CASTEiJ_T0037272.1 MGP_CASTEiJ_G0020027.1 mouse_genomes_project 13 73203056 73208409 - Sdha protein_coding processed_transcript MGP_CASTEiJ_T0037008.1 MGP_CASTEiJ_G0019910.1 mouse_genomes_project 13 59398244 59401211 - MGP_CASTEiJ_P0037008 Gas1 protein_coding protein_coding MGP_CASTEiJ_T0036224.1 MGP_CASTEiJ_G0019651.1 mouse_genomes_project 13 21960821 22023946 + MGP_CASTEiJ_P0036224 D130043K22Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0036225.1 MGP_CASTEiJ_G0019651.1 mouse_genomes_project 13 21960827 22025360 + MGP_CASTEiJ_P0036225 D130043K22Rik protein_coding protein_coding MGP_CASTEiJ_T0036226.1 MGP_CASTEiJ_G0019651.1 mouse_genomes_project 13 21960827 22025353 + MGP_CASTEiJ_P0036226 D130043K22Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036227.1 MGP_CASTEiJ_G0019651.1 mouse_genomes_project 13 21999342 22001468 + D130043K22Rik protein_coding processed_transcript MGP_CASTEiJ_T0036228.1 MGP_CASTEiJ_G0019651.1 mouse_genomes_project 13 22016506 22023995 + D130043K22Rik protein_coding processed_transcript MGP_CASTEiJ_T0102060.1 MGP_CASTEiJ_G0038785.1 mouse_genomes_project 13 30639693 30642651 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011014.1 MGP_CASTEiJ_G0009202.1 mouse_genomes_project 13 10189198 10189495 + Gm23081 misc_RNA misc_RNA MGP_CASTEiJ_T0003324.1 MGP_CASTEiJ_G0003060.1 mouse_genomes_project 13 19792623 19822120 + Gm11309 antisense antisense MGP_CASTEiJ_T0012564.1 MGP_CASTEiJ_G0010727.1 mouse_genomes_project 13 63213029 63213670 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036148.1 MGP_CASTEiJ_G0019622.1 mouse_genomes_project 13 20635437 20635830 + MGP_CASTEiJ_P0036148 Hist1h4d protein_coding protein_coding MGP_CASTEiJ_T0037438.1 MGP_CASTEiJ_G0020067.1 mouse_genomes_project 13 90373787 90375597 + MGP_CASTEiJ_P0037438 Rps23 protein_coding protein_coding MGP_CASTEiJ_T0011013.1 MGP_CASTEiJ_G0009201.1 mouse_genomes_project 13 6162577 6162829 - Gm23496 misc_RNA misc_RNA MGP_CASTEiJ_T0036300.1 MGP_CASTEiJ_G0019687.1 mouse_genomes_project 13 28230635 28370032 - MGP_CASTEiJ_P0036300 Exoc2 protein_coding protein_coding MGP_CASTEiJ_T0036301.1 MGP_CASTEiJ_G0019687.1 mouse_genomes_project 13 28230635 28393737 - MGP_CASTEiJ_P0036301 Exoc2 protein_coding protein_coding MGP_CASTEiJ_T0000840.1 MGP_CASTEiJ_G0000779.1 mouse_genomes_project 13 38573274 38575919 - TEC TEC MGP_CASTEiJ_T0000847.1 MGP_CASTEiJ_G0000786.1 mouse_genomes_project 13 67640390 67641908 + TEC TEC MGP_CASTEiJ_T0006452.1 MGP_CASTEiJ_G0005354.1 mouse_genomes_project 13 98372010 98382806 - 2310005E17Rik lincRNA lincRNA MGP_CASTEiJ_T0036350.1 MGP_CASTEiJ_G0019709.1 mouse_genomes_project 13 31449860 31473920 + MGP_CASTEiJ_P0036350 Nqo2 protein_coding protein_coding MGP_CASTEiJ_T0036351.1 MGP_CASTEiJ_G0019709.1 mouse_genomes_project 13 31449860 31473920 + MGP_CASTEiJ_P0036351 Nqo2 protein_coding protein_coding MGP_CASTEiJ_T0037771.1 MGP_CASTEiJ_G0020171.1 mouse_genomes_project 13 105303288 105408370 - MGP_CASTEiJ_P0037771 Rgs7bp protein_coding protein_coding MGP_CASTEiJ_T0036293.1 MGP_CASTEiJ_G0019684.1 mouse_genomes_project 13 27932216 27937250 - MGP_CASTEiJ_P0036293 Uqcrfs1 protein_coding protein_coding MGP_CASTEiJ_T0009696.1 MGP_CASTEiJ_G0007884.1 mouse_genomes_project 13 86713841 86713951 + Gm24935 miRNA miRNA MGP_CASTEiJ_T0036257.1 MGP_CASTEiJ_G0019667.1 mouse_genomes_project 13 24569247 24576560 - MGP_CASTEiJ_P0036257 Prl2b1 protein_coding protein_coding MGP_CASTEiJ_T0036258.1 MGP_CASTEiJ_G0019667.1 mouse_genomes_project 13 24569247 24576560 - MGP_CASTEiJ_P0036258 Prl2b1 protein_coding protein_coding MGP_CASTEiJ_T0037281.1 MGP_CASTEiJ_G0020031.1 mouse_genomes_project 13 73317523 73330728 - MGP_CASTEiJ_P0037281 2610044O15Rik8 protein_coding protein_coding MGP_CASTEiJ_T0006470.1 MGP_CASTEiJ_G0005370.1 mouse_genomes_project 13 112695891 112707637 + Gm15323 lincRNA lincRNA MGP_CASTEiJ_T0102067.1 MGP_CASTEiJ_G0038792.1 mouse_genomes_project 13 31253206 31256985 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100575.1 MGP_CASTEiJ_G0037488.1 mouse_genomes_project 13 57414266 57414408 + Gm24284 snoRNA snoRNA MGP_CASTEiJ_T0036802.1 MGP_CASTEiJ_G0019847.1 mouse_genomes_project 13 53914630 54001767 - MGP_CASTEiJ_P0036802 Uimc1 protein_coding protein_coding MGP_CASTEiJ_T0036803.1 MGP_CASTEiJ_G0019847.1 mouse_genomes_project 13 53914630 54001772 - MGP_CASTEiJ_P0036803 Uimc1 protein_coding protein_coding MGP_CASTEiJ_T0036804.1 MGP_CASTEiJ_G0019847.1 mouse_genomes_project 13 53914945 54001726 - MGP_CASTEiJ_P0036804 Uimc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036805.1 MGP_CASTEiJ_G0019847.1 mouse_genomes_project 13 53915048 54001772 - MGP_CASTEiJ_P0036805 Uimc1 protein_coding protein_coding MGP_CASTEiJ_T0036806.1 MGP_CASTEiJ_G0019847.1 mouse_genomes_project 13 53973900 54001771 - Uimc1 protein_coding retained_intron MGP_CASTEiJ_T0036807.1 MGP_CASTEiJ_G0019847.1 mouse_genomes_project 13 53983966 53994225 - Uimc1 protein_coding retained_intron MGP_CASTEiJ_T0035838.1 MGP_CASTEiJ_G0019486.1 mouse_genomes_project 13 633725 651571 - MGP_CASTEiJ_P0035838 Akr1c18 protein_coding protein_coding MGP_CASTEiJ_T0035839.1 MGP_CASTEiJ_G0019486.1 mouse_genomes_project 13 633725 651597 - MGP_CASTEiJ_P0035839 Akr1c18 protein_coding protein_coding MGP_CASTEiJ_T0100563.1 MGP_CASTEiJ_G0037476.1 mouse_genomes_project 13 28854871 28854996 + Gm23351 snoRNA snoRNA MGP_CASTEiJ_T0102069.1 MGP_CASTEiJ_G0038794.1 mouse_genomes_project 13 40831387 40832261 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0036724.1 MGP_CASTEiJ_G0019833.1 mouse_genomes_project 13 53407158 53421822 - 4833439L19Rik protein_coding processed_transcript MGP_CASTEiJ_T0036725.1 MGP_CASTEiJ_G0019833.1 mouse_genomes_project 13 53409333 53421841 - MGP_CASTEiJ_P0036725 4833439L19Rik protein_coding protein_coding MGP_CASTEiJ_T0036726.1 MGP_CASTEiJ_G0019833.1 mouse_genomes_project 13 53412693 53421780 - 4833439L19Rik protein_coding retained_intron MGP_CASTEiJ_T0036727.1 MGP_CASTEiJ_G0019833.1 mouse_genomes_project 13 53412867 53421827 - 4833439L19Rik protein_coding retained_intron MGP_CASTEiJ_T0036728.1 MGP_CASTEiJ_G0019833.1 mouse_genomes_project 13 53413086 53421819 - MGP_CASTEiJ_P0036728 4833439L19Rik protein_coding protein_coding MGP_CASTEiJ_T0036729.1 MGP_CASTEiJ_G0019833.1 mouse_genomes_project 13 53418068 53421833 - 4833439L19Rik protein_coding retained_intron MGP_CASTEiJ_T0036730.1 MGP_CASTEiJ_G0019833.1 mouse_genomes_project 13 53418190 53421845 - MGP_CASTEiJ_P0036730 4833439L19Rik protein_coding protein_coding MGP_CASTEiJ_T0036731.1 MGP_CASTEiJ_G0019833.1 mouse_genomes_project 13 53418205 53421814 - MGP_CASTEiJ_P0036731 4833439L19Rik protein_coding protein_coding MGP_CASTEiJ_T0036144.1 MGP_CASTEiJ_G0019618.1 mouse_genomes_project 13 20581248 20581721 + MGP_CASTEiJ_P0036144 Hist1h4h protein_coding protein_coding MGP_CASTEiJ_T0037527.1 MGP_CASTEiJ_G0020098.1 mouse_genomes_project 13 94508019 94518521 + MGP_CASTEiJ_P0037527 Otp protein_coding protein_coding MGP_CASTEiJ_T0037528.1 MGP_CASTEiJ_G0020098.1 mouse_genomes_project 13 94514995 94515946 + Otp protein_coding processed_transcript MGP_CASTEiJ_T0037903.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115672542 115682922 + MGP_CASTEiJ_P0037903 Mocs2 protein_coding protein_coding MGP_CASTEiJ_T0037904.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115672550 115675372 + Mocs2 protein_coding retained_intron MGP_CASTEiJ_T0037905.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115672564 115676262 + Mocs2 protein_coding retained_intron MGP_CASTEiJ_T0037906.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115672565 115683725 + MGP_CASTEiJ_P0037906 Mocs2 protein_coding protein_coding MGP_CASTEiJ_T0037907.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115672569 115682681 + MGP_CASTEiJ_P0037907 Mocs2 protein_coding protein_coding MGP_CASTEiJ_T0037908.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115672576 115683205 + Mocs2 protein_coding retained_intron MGP_CASTEiJ_T0037909.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115672576 115682873 + MGP_CASTEiJ_P0037909 Mocs2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037910.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115672577 115686255 + MGP_CASTEiJ_P0037910 Mocs2 protein_coding protein_coding MGP_CASTEiJ_T0037911.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115672583 115679763 + Mocs2 protein_coding retained_intron MGP_CASTEiJ_T0037912.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115672583 115682922 + MGP_CASTEiJ_P0037912 Mocs2 protein_coding protein_coding MGP_CASTEiJ_T0037913.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115672589 115680497 + MGP_CASTEiJ_P0037913 Mocs2 protein_coding protein_coding MGP_CASTEiJ_T0037914.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115672592 115682930 + MGP_CASTEiJ_P0037914 Mocs2 protein_coding protein_coding MGP_CASTEiJ_T0037915.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115672593 115682743 + MGP_CASTEiJ_P0037915 Mocs2 protein_coding protein_coding MGP_CASTEiJ_T0037916.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115672600 115682922 + MGP_CASTEiJ_P0037916 Mocs2 protein_coding protein_coding MGP_CASTEiJ_T0037917.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115672606 115682914 + MGP_CASTEiJ_P0037917 Mocs2 protein_coding protein_coding MGP_CASTEiJ_T0037918.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115672612 115682928 + MGP_CASTEiJ_P0037918 Mocs2 protein_coding protein_coding MGP_CASTEiJ_T0037919.1 MGP_CASTEiJ_G0020215.1 mouse_genomes_project 13 115673211 115679471 + MGP_CASTEiJ_P0037919 Mocs2 protein_coding protein_coding MGP_CASTEiJ_T0006359.1 MGP_CASTEiJ_G0005292.1 mouse_genomes_project 13 28018000 28029394 + 4930519D14Rik lincRNA lincRNA MGP_CASTEiJ_T0009667.1 MGP_CASTEiJ_G0007855.1 mouse_genomes_project 13 21004197 21004326 - Gm44344 miRNA miRNA MGP_CASTEiJ_T0099355.1 MGP_CASTEiJ_G0036268.1 mouse_genomes_project 13 62012365 62012472 + Gm25448 snRNA snRNA MGP_CASTEiJ_T0009666.1 MGP_CASTEiJ_G0007854.1 mouse_genomes_project 13 20567502 20567611 + n-TStga1 miRNA miRNA MGP_CASTEiJ_T0037254.1 MGP_CASTEiJ_G0020022.1 mouse_genomes_project 13 72876626 72903929 - MGP_CASTEiJ_P0037254 Cep72 protein_coding protein_coding MGP_CASTEiJ_T0012579.1 MGP_CASTEiJ_G0010742.1 mouse_genomes_project 13 79140862 79142036 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036713.1 MGP_CASTEiJ_G0019831.1 mouse_genomes_project 13 53302019 53312036 - MGP_CASTEiJ_P0036713 Thoc3 protein_coding protein_coding MGP_CASTEiJ_T0036714.1 MGP_CASTEiJ_G0019831.1 mouse_genomes_project 13 53306871 53311975 - Thoc3 protein_coding processed_transcript MGP_CASTEiJ_T0036715.1 MGP_CASTEiJ_G0019831.1 mouse_genomes_project 13 53310999 53312013 - Thoc3 protein_coding retained_intron MGP_CASTEiJ_T0037522.1 MGP_CASTEiJ_G0020094.1 mouse_genomes_project 13 93792821 93872433 - MGP_CASTEiJ_P0037522 Scamp1 protein_coding protein_coding MGP_CASTEiJ_T0037523.1 MGP_CASTEiJ_G0020094.1 mouse_genomes_project 13 93810625 93850258 - MGP_CASTEiJ_P0037523 Scamp1 protein_coding protein_coding MGP_CASTEiJ_T0098338.1 MGP_CASTEiJ_G0035269.1 mouse_genomes_project 13 110232904 110233308 + pseudogene pseudogene MGP_CASTEiJ_T0037932.1 MGP_CASTEiJ_G0020224.1 mouse_genomes_project 13 119515330 119558204 - MGP_CASTEiJ_P0037932 Mrps30 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037933.1 MGP_CASTEiJ_G0020224.1 mouse_genomes_project 13 119551177 119558337 - MGP_CASTEiJ_P0037933 Mrps30 protein_coding protein_coding MGP_CASTEiJ_T0036883.1 MGP_CASTEiJ_G0019875.1 mouse_genomes_project 13 54784367 54791822 - MGP_CASTEiJ_P0036883 Pitx1 protein_coding protein_coding MGP_CASTEiJ_T0036884.1 MGP_CASTEiJ_G0019875.1 mouse_genomes_project 13 54787788 54796590 - MGP_CASTEiJ_P0036884 Pitx1 protein_coding protein_coding MGP_CASTEiJ_T0036708.1 MGP_CASTEiJ_G0019826.1 mouse_genomes_project 13 52285428 52285785 + MGP_CASTEiJ_P0036708 Gm5449 protein_coding protein_coding MGP_CASTEiJ_T0036171.1 MGP_CASTEiJ_G0019638.1 mouse_genomes_project 13 20904524 20926971 + MGP_CASTEiJ_P0036171 Slc17a3 protein_coding protein_coding MGP_CASTEiJ_T0036172.1 MGP_CASTEiJ_G0019638.1 mouse_genomes_project 13 20904524 20926971 + MGP_CASTEiJ_P0036172 Slc17a3 protein_coding protein_coding MGP_CASTEiJ_T0036173.1 MGP_CASTEiJ_G0019638.1 mouse_genomes_project 13 20904539 20924600 + MGP_CASTEiJ_P0036173 Slc17a3 protein_coding protein_coding MGP_CASTEiJ_T0036174.1 MGP_CASTEiJ_G0019638.1 mouse_genomes_project 13 20904568 20924600 + MGP_CASTEiJ_P0036174 Slc17a3 protein_coding protein_coding MGP_CASTEiJ_T0036175.1 MGP_CASTEiJ_G0019638.1 mouse_genomes_project 13 20907547 20913883 + MGP_CASTEiJ_P0036175 Slc17a3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036162.1 MGP_CASTEiJ_G0019632.1 mouse_genomes_project 13 20810535 20811485 + MGP_CASTEiJ_P0036162 Hist1h2ae protein_coding protein_coding MGP_CASTEiJ_T0037920.1 MGP_CASTEiJ_G0020216.1 mouse_genomes_project 13 115689878 115801582 - MGP_CASTEiJ_P0037920 Itga2 protein_coding protein_coding MGP_CASTEiJ_T0036078.1 MGP_CASTEiJ_G0019568.1 mouse_genomes_project 13 18701915 18702857 - MGP_CASTEiJ_P0036078 Olfr11 protein_coding protein_coding MGP_CASTEiJ_T0036079.1 MGP_CASTEiJ_G0019568.1 mouse_genomes_project 13 18701915 18705598 - MGP_CASTEiJ_P0036079 Olfr11 protein_coding protein_coding MGP_CASTEiJ_T0009707.1 MGP_CASTEiJ_G0007895.1 mouse_genomes_project 13 115430905 115431002 + Gm25950 miRNA miRNA MGP_CASTEiJ_T0012583.1 MGP_CASTEiJ_G0010746.1 mouse_genomes_project 13 87441602 87442399 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037248.1 MGP_CASTEiJ_G0020019.1 mouse_genomes_project 13 72797295 72830278 + MGP_CASTEiJ_P0037248 Zdhhc11 protein_coding protein_coding MGP_CASTEiJ_T0036656.1 MGP_CASTEiJ_G0019814.1 mouse_genomes_project 13 50258598 50265702 + MGP_CASTEiJ_P0036656 Cks2 protein_coding protein_coding MGP_CASTEiJ_T0036604.1 MGP_CASTEiJ_G0019795.1 mouse_genomes_project 13 47595599 47608706 - MGP_CASTEiJ_P0036604 Card19 protein_coding protein_coding MGP_CASTEiJ_T0037202.1 MGP_CASTEiJ_G0020001.1 mouse_genomes_project 13 69280679 69329675 - MGP_CASTEiJ_P0037202 Ice1 protein_coding protein_coding MGP_CASTEiJ_T0099344.1 MGP_CASTEiJ_G0036257.1 mouse_genomes_project 13 33208979 33209122 + Gm22126 snRNA snRNA MGP_CASTEiJ_T0102065.1 MGP_CASTEiJ_G0038790.1 mouse_genomes_project 13 31208934 31209742 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099343.1 MGP_CASTEiJ_G0036256.1 mouse_genomes_project 13 30280951 30281060 + Gm27342 snRNA snRNA MGP_CASTEiJ_T0003330.1 MGP_CASTEiJ_G0003065.1 mouse_genomes_project 13 27315714 27317694 + Gm11365 antisense antisense MGP_CASTEiJ_T0036654.1 MGP_CASTEiJ_G0019813.1 mouse_genomes_project 13 50027598 50178473 - MGP_CASTEiJ_P0036654 Shc3 protein_coding protein_coding MGP_CASTEiJ_T0036655.1 MGP_CASTEiJ_G0019813.1 mouse_genomes_project 13 50060280 50178893 - MGP_CASTEiJ_P0036655 Shc3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099354.1 MGP_CASTEiJ_G0036267.1 mouse_genomes_project 13 60188220 60188319 + Gm24594 snRNA snRNA MGP_CASTEiJ_T0003351.1 MGP_CASTEiJ_G0003080.1 mouse_genomes_project 13 63529365 63548303 + 1810034E14Rik antisense antisense MGP_CASTEiJ_T0003352.1 MGP_CASTEiJ_G0003080.1 mouse_genomes_project 13 63529437 63546629 + 1810034E14Rik antisense antisense MGP_CASTEiJ_T0003353.1 MGP_CASTEiJ_G0003080.1 mouse_genomes_project 13 63546631 63548303 + 1810034E14Rik antisense antisense MGP_CASTEiJ_T0037110.1 MGP_CASTEiJ_G0019957.1 mouse_genomes_project 13 65530488 65540470 - MGP_CASTEiJ_P0037110 Mterf3 protein_coding protein_coding MGP_CASTEiJ_T0037111.1 MGP_CASTEiJ_G0019957.1 mouse_genomes_project 13 65535962 65558839 - MGP_CASTEiJ_P0037111 Mterf3 protein_coding protein_coding MGP_CASTEiJ_T0037112.1 MGP_CASTEiJ_G0019957.1 mouse_genomes_project 13 65535970 65558818 - MGP_CASTEiJ_P0037112 Mterf3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037113.1 MGP_CASTEiJ_G0019957.1 mouse_genomes_project 13 65536094 65543472 - Mterf3 protein_coding processed_transcript MGP_CASTEiJ_T0037114.1 MGP_CASTEiJ_G0019957.1 mouse_genomes_project 13 65540882 65558459 - MGP_CASTEiJ_P0037114 Mterf3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037115.1 MGP_CASTEiJ_G0019957.1 mouse_genomes_project 13 65540912 65554620 - MGP_CASTEiJ_P0037115 Mterf3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037116.1 MGP_CASTEiJ_G0019957.1 mouse_genomes_project 13 65547217 65558655 - MGP_CASTEiJ_P0037116 Mterf3 protein_coding protein_coding MGP_CASTEiJ_T0037117.1 MGP_CASTEiJ_G0019957.1 mouse_genomes_project 13 65552668 65554682 - MGP_CASTEiJ_P0037117 Mterf3 protein_coding protein_coding MGP_CASTEiJ_T0037118.1 MGP_CASTEiJ_G0019957.1 mouse_genomes_project 13 65554390 65558789 - MGP_CASTEiJ_P0037118 Mterf3 protein_coding protein_coding MGP_CASTEiJ_T0037119.1 MGP_CASTEiJ_G0019957.1 mouse_genomes_project 13 65555015 65558751 - Mterf3 protein_coding processed_transcript MGP_CASTEiJ_T0037120.1 MGP_CASTEiJ_G0019957.1 mouse_genomes_project 13 65556936 65558792 - Mterf3 protein_coding processed_transcript MGP_CASTEiJ_T0006347.1 MGP_CASTEiJ_G0005284.1 mouse_genomes_project 13 21427911 21428857 - Gm11342 lincRNA lincRNA MGP_CASTEiJ_T0037094.1 MGP_CASTEiJ_G0019948.1 mouse_genomes_project 13 64332696 64340776 - MGP_CASTEiJ_P0037094 Prss47 protein_coding protein_coding MGP_CASTEiJ_T0037095.1 MGP_CASTEiJ_G0019948.1 mouse_genomes_project 13 64333004 64339863 - MGP_CASTEiJ_P0037095 Prss47 protein_coding protein_coding MGP_CASTEiJ_T0036120.1 MGP_CASTEiJ_G0019598.1 mouse_genomes_project 13 19511475 19549518 + MGP_CASTEiJ_P0036120 protein_coding protein_coding MGP_CASTEiJ_T0012505.1 MGP_CASTEiJ_G0010668.1 mouse_genomes_project 13 756570 756861 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035827.1 MGP_CASTEiJ_G0019480.1 mouse_genomes_project 13 345028 346751 + MGP_CASTEiJ_P0035827 protein_coding protein_coding MGP_CASTEiJ_T0036874.1 MGP_CASTEiJ_G0019870.1 mouse_genomes_project 13 54576367 54627090 + MGP_CASTEiJ_P0036874 Ddx46 protein_coding protein_coding MGP_CASTEiJ_T0036875.1 MGP_CASTEiJ_G0019870.1 mouse_genomes_project 13 54576367 54627090 + MGP_CASTEiJ_P0036875 Ddx46 protein_coding protein_coding MGP_CASTEiJ_T0036876.1 MGP_CASTEiJ_G0019870.1 mouse_genomes_project 13 54576519 54627098 + MGP_CASTEiJ_P0036876 Ddx46 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036317.1 MGP_CASTEiJ_G0019698.1 mouse_genomes_project 13 30366521 30377011 - MGP_CASTEiJ_P0036317 Serpinb1a protein_coding protein_coding MGP_CASTEiJ_T0036318.1 MGP_CASTEiJ_G0019698.1 mouse_genomes_project 13 30366522 30377011 - MGP_CASTEiJ_P0036318 Serpinb1a protein_coding protein_coding MGP_CASTEiJ_T0100591.1 MGP_CASTEiJ_G0037504.1 mouse_genomes_project 13 99739574 99739705 - Gm24471 snoRNA snoRNA MGP_CASTEiJ_T0037200.1 MGP_CASTEiJ_G0019999.1 mouse_genomes_project 13 68368742 68407383 - MGP_CASTEiJ_P0037200 Ube2ql1 protein_coding protein_coding MGP_CASTEiJ_T0012525.1 MGP_CASTEiJ_G0010688.1 mouse_genomes_project 13 20409316 20409472 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037142.1 MGP_CASTEiJ_G0019971.1 mouse_genomes_project 13 66029751 66051927 - MGP_CASTEiJ_P0037142 Zfp595 protein_coding protein_coding MGP_CASTEiJ_T0037143.1 MGP_CASTEiJ_G0019971.1 mouse_genomes_project 13 66030474 66051940 - MGP_CASTEiJ_P0037143 Zfp595 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037144.1 MGP_CASTEiJ_G0019971.1 mouse_genomes_project 13 66031190 66051916 - MGP_CASTEiJ_P0037144 Zfp595 protein_coding protein_coding MGP_CASTEiJ_T0037145.1 MGP_CASTEiJ_G0019971.1 mouse_genomes_project 13 66031498 66051880 - MGP_CASTEiJ_P0037145 Zfp595 protein_coding protein_coding MGP_CASTEiJ_T0037356.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82627416 82788193 + MGP_CASTEiJ_P0037356 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037357.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82627588 82788536 + MGP_CASTEiJ_P0037357 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037358.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82627622 82791919 + MGP_CASTEiJ_P0037358 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037359.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82627622 82791919 + MGP_CASTEiJ_P0037359 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037360.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82627622 82717308 + MGP_CASTEiJ_P0037360 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037361.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82627622 82717374 + MGP_CASTEiJ_P0037361 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037362.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82647204 82749564 + MGP_CASTEiJ_P0037362 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037363.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82648043 82757335 + MGP_CASTEiJ_P0037363 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037364.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82648549 82653121 + Mef2c protein_coding retained_intron MGP_CASTEiJ_T0037365.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82648606 82789307 + MGP_CASTEiJ_P0037365 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037366.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82648607 82749705 + MGP_CASTEiJ_P0037366 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037367.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82648613 82788543 + MGP_CASTEiJ_P0037367 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037368.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82648643 82777821 + MGP_CASTEiJ_P0037368 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037369.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82648672 82758087 + Mef2c protein_coding retained_intron MGP_CASTEiJ_T0037370.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82653910 82749555 + MGP_CASTEiJ_P0037370 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037371.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82696179 82760587 + MGP_CASTEiJ_P0037371 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037372.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82696212 82749742 + MGP_CASTEiJ_P0037372 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037373.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82697438 82791921 + MGP_CASTEiJ_P0037373 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037374.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82697449 82702248 + Mef2c protein_coding retained_intron MGP_CASTEiJ_T0037375.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82697453 82789321 + MGP_CASTEiJ_P0037375 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037376.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82697456 82757436 + MGP_CASTEiJ_P0037376 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037377.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82698985 82777774 + MGP_CASTEiJ_P0037377 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037378.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82699050 82757361 + MGP_CASTEiJ_P0037378 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037379.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82699515 82787478 + MGP_CASTEiJ_P0037379 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037380.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82699515 82787478 + MGP_CASTEiJ_P0037380 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037381.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82699515 82791921 + MGP_CASTEiJ_P0037381 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037382.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82749772 82787583 + MGP_CASTEiJ_P0037382 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0037383.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82757260 82780404 + MGP_CASTEiJ_P0037383 Mef2c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037384.1 MGP_CASTEiJ_G0020055.1 mouse_genomes_project 13 82777798 82787586 + MGP_CASTEiJ_P0037384 Mef2c protein_coding protein_coding MGP_CASTEiJ_T0012537.1 MGP_CASTEiJ_G0010700.1 mouse_genomes_project 13 24493832 24494173 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102040.1 MGP_CASTEiJ_G0038765.1 mouse_genomes_project 13 19611057 19611423 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0036625.1 MGP_CASTEiJ_G0019805.1 mouse_genomes_project 13 48077325 48102872 + MGP_CASTEiJ_P0036625 Nol8 protein_coding protein_coding MGP_CASTEiJ_T0011017.1 MGP_CASTEiJ_G0009205.1 mouse_genomes_project 13 13723636 13723924 - Gm26098 misc_RNA misc_RNA MGP_CASTEiJ_T0036111.1 MGP_CASTEiJ_G0019589.1 mouse_genomes_project 13 19282232 19285472 - MGP_CASTEiJ_P0036111 protein_coding protein_coding MGP_CASTEiJ_T0036084.1 MGP_CASTEiJ_G0019572.1 mouse_genomes_project 13 18791545 18791878 + MGP_CASTEiJ_P0036084 Hist1h3h protein_coding protein_coding MGP_CASTEiJ_T0037432.1 MGP_CASTEiJ_G0020065.1 mouse_genomes_project 13 90021512 90021878 + MGP_CASTEiJ_P0037432 Gm21726 protein_coding protein_coding MGP_CASTEiJ_T0037282.1 MGP_CASTEiJ_G0020032.1 mouse_genomes_project 13 73578705 73627695 + MGP_CASTEiJ_P0037282 Erap1 protein_coding protein_coding MGP_CASTEiJ_T0006381.1 MGP_CASTEiJ_G0005308.1 mouse_genomes_project 13 36719943 36725328 - Gm26514 lincRNA lincRNA MGP_CASTEiJ_T0037768.1 MGP_CASTEiJ_G0020169.1 mouse_genomes_project 13 105140287 105164229 + MGP_CASTEiJ_P0037768 Srek1ip1 protein_coding protein_coding MGP_CASTEiJ_T0037769.1 MGP_CASTEiJ_G0020169.1 mouse_genomes_project 13 105149793 105160903 + Srek1ip1 protein_coding retained_intron MGP_CASTEiJ_T0037744.1 MGP_CASTEiJ_G0020161.1 mouse_genomes_project 13 104277455 104372778 - MGP_CASTEiJ_P0037744 Nln protein_coding protein_coding MGP_CASTEiJ_T0036663.1 MGP_CASTEiJ_G0019816.1 mouse_genomes_project 13 50304867 50320183 - MGP_CASTEiJ_P0036663 Gm15440 protein_coding protein_coding MGP_CASTEiJ_T0099334.1 MGP_CASTEiJ_G0036247.1 mouse_genomes_project 13 10920501 10920607 + Gm26129 snRNA snRNA MGP_CASTEiJ_T0011028.1 MGP_CASTEiJ_G0009216.1 mouse_genomes_project 13 91265933 91266233 - Gm24597 misc_RNA misc_RNA MGP_CASTEiJ_T0036441.1 MGP_CASTEiJ_G0019741.1 mouse_genomes_project 13 37784096 38087938 - MGP_CASTEiJ_P0036441 Ofcc1 protein_coding protein_coding MGP_CASTEiJ_T0035872.1 MGP_CASTEiJ_G0019499.1 mouse_genomes_project 13 4532794 4540822 - MGP_CASTEiJ_P0035872 protein_coding protein_coding MGP_CASTEiJ_T0037556.1 MGP_CASTEiJ_G0020106.1 mouse_genomes_project 13 95290285 95307643 - MGP_CASTEiJ_P0037556 F2r protein_coding protein_coding MGP_CASTEiJ_T0006342.1 MGP_CASTEiJ_G0005280.1 mouse_genomes_project 13 9252230 10176570 - lincRNA lincRNA MGP_CASTEiJ_T0035982.1 MGP_CASTEiJ_G0019524.1 mouse_genomes_project 13 11065631 11377645 - MGP_CASTEiJ_P0035982 Hecw1 protein_coding protein_coding MGP_CASTEiJ_T0035983.1 MGP_CASTEiJ_G0019524.1 mouse_genomes_project 13 11089408 11235711 - MGP_CASTEiJ_P0035983 Hecw1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006397.1 MGP_CASTEiJ_G0005320.1 mouse_genomes_project 13 47351913 47355597 + Fam120aos lincRNA lincRNA MGP_CASTEiJ_T0006429.1 MGP_CASTEiJ_G0005341.1 mouse_genomes_project 13 80024552 80178984 + 9330111N05Rik lincRNA lincRNA MGP_CASTEiJ_T0006430.1 MGP_CASTEiJ_G0005341.1 mouse_genomes_project 13 80025742 80137112 + 9330111N05Rik lincRNA lincRNA MGP_CASTEiJ_T0006431.1 MGP_CASTEiJ_G0005341.1 mouse_genomes_project 13 80042614 80181422 + 9330111N05Rik lincRNA lincRNA MGP_CASTEiJ_T0011018.1 MGP_CASTEiJ_G0009206.1 mouse_genomes_project 13 31763814 31764102 - Gm24530 misc_RNA misc_RNA MGP_CASTEiJ_T0006395.1 MGP_CASTEiJ_G0005318.1 mouse_genomes_project 13 46585491 46586954 - A330048O09Rik lincRNA lincRNA MGP_CASTEiJ_T0016624.1 MGP_CASTEiJ_G0014575.1 mouse_genomes_project 13 112242616 112312559 + Gm15286 processed_transcript processed_transcript MGP_CASTEiJ_T0016625.1 MGP_CASTEiJ_G0014575.1 mouse_genomes_project 13 112283072 112310247 + Gm15286 processed_transcript processed_transcript MGP_CASTEiJ_T0037872.1 MGP_CASTEiJ_G0020196.1 mouse_genomes_project 13 113239813 113299366 - MGP_CASTEiJ_P0037872 Il31ra protein_coding protein_coding MGP_CASTEiJ_T0037187.1 MGP_CASTEiJ_G0019995.1 mouse_genomes_project 13 67231000 67621392 - MGP_CASTEiJ_P0037187 Adcy2 protein_coding protein_coding MGP_CASTEiJ_T0012540.1 MGP_CASTEiJ_G0010703.1 mouse_genomes_project 13 26183762 26184611 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037922.1 MGP_CASTEiJ_G0020218.1 mouse_genomes_project 13 115974724 115978015 - MGP_CASTEiJ_P0037922 Pelo protein_coding protein_coding MGP_CASTEiJ_T0098333.1 MGP_CASTEiJ_G0035264.1 mouse_genomes_project 13 345072 346495 + pseudogene pseudogene MGP_CASTEiJ_T0100552.1 MGP_CASTEiJ_G0037465.1 mouse_genomes_project 13 5468403 5468536 - snoRNA snoRNA MGP_CASTEiJ_T0035900.1 MGP_CASTEiJ_G0019504.1 mouse_genomes_project 13 5625710 5704270 + MGP_CASTEiJ_P0035900 Larp4b protein_coding protein_coding MGP_CASTEiJ_T0035901.1 MGP_CASTEiJ_G0019504.1 mouse_genomes_project 13 5625736 5704462 + MGP_CASTEiJ_P0035901 Larp4b protein_coding protein_coding MGP_CASTEiJ_T0035902.1 MGP_CASTEiJ_G0019504.1 mouse_genomes_project 13 5625741 5656707 + MGP_CASTEiJ_P0035902 Larp4b protein_coding protein_coding MGP_CASTEiJ_T0035903.1 MGP_CASTEiJ_G0019504.1 mouse_genomes_project 13 5625811 5707600 + MGP_CASTEiJ_P0035903 Larp4b protein_coding protein_coding MGP_CASTEiJ_T0035904.1 MGP_CASTEiJ_G0019504.1 mouse_genomes_project 13 5669264 5676715 + Larp4b protein_coding processed_transcript MGP_CASTEiJ_T0035905.1 MGP_CASTEiJ_G0019504.1 mouse_genomes_project 13 5669484 5670250 + Larp4b protein_coding processed_transcript MGP_CASTEiJ_T0035906.1 MGP_CASTEiJ_G0019504.1 mouse_genomes_project 13 5701541 5706280 + Larp4b protein_coding retained_intron MGP_CASTEiJ_T0003319.1 MGP_CASTEiJ_G0003056.1 mouse_genomes_project 13 18833172 18834525 + Gm11274 antisense antisense MGP_CASTEiJ_T0006428.1 MGP_CASTEiJ_G0005340.1 mouse_genomes_project 13 80017187 80025397 - Gm4211 lincRNA lincRNA MGP_CASTEiJ_T0099351.1 MGP_CASTEiJ_G0036264.1 mouse_genomes_project 13 43621728 43621835 - Gm23387 snRNA snRNA MGP_CASTEiJ_T0099362.1 MGP_CASTEiJ_G0036275.1 mouse_genomes_project 13 100739589 100739696 + Gm24261 snRNA snRNA MGP_CASTEiJ_T0035826.1 MGP_CASTEiJ_G0019479.1 mouse_genomes_project 13 309957 311384 - MGP_CASTEiJ_P0035826 Calml3 protein_coding protein_coding MGP_CASTEiJ_T0037285.1 MGP_CASTEiJ_G0020034.1 mouse_genomes_project 13 74036749 74078201 + MGP_CASTEiJ_P0037285 Pcsk1 protein_coding protein_coding MGP_CASTEiJ_T0037286.1 MGP_CASTEiJ_G0020034.1 mouse_genomes_project 13 74036839 74053504 + Pcsk1 protein_coding retained_intron MGP_CASTEiJ_T0012509.1 MGP_CASTEiJ_G0010672.1 mouse_genomes_project 13 11802114 11802297 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036866.1 MGP_CASTEiJ_G0019867.1 mouse_genomes_project 13 54531578 54536126 + MGP_CASTEiJ_P0036866 Tmed9 protein_coding protein_coding MGP_CASTEiJ_T0035972.1 MGP_CASTEiJ_G0019523.1 mouse_genomes_project 13 10893927 10962638 + Arid4b protein_coding processed_transcript MGP_CASTEiJ_T0035973.1 MGP_CASTEiJ_G0019523.1 mouse_genomes_project 13 10894479 11013918 + MGP_CASTEiJ_P0035973 Arid4b protein_coding protein_coding MGP_CASTEiJ_T0035974.1 MGP_CASTEiJ_G0019523.1 mouse_genomes_project 13 10894480 11044408 + MGP_CASTEiJ_P0035974 Arid4b protein_coding protein_coding MGP_CASTEiJ_T0035975.1 MGP_CASTEiJ_G0019523.1 mouse_genomes_project 13 10894487 11044644 + MGP_CASTEiJ_P0035975 Arid4b protein_coding protein_coding MGP_CASTEiJ_T0035976.1 MGP_CASTEiJ_G0019523.1 mouse_genomes_project 13 10894487 11044403 + MGP_CASTEiJ_P0035976 Arid4b protein_coding protein_coding MGP_CASTEiJ_T0035977.1 MGP_CASTEiJ_G0019523.1 mouse_genomes_project 13 10894494 11009682 + MGP_CASTEiJ_P0035977 Arid4b protein_coding protein_coding MGP_CASTEiJ_T0035978.1 MGP_CASTEiJ_G0019523.1 mouse_genomes_project 13 10894749 10955450 + Arid4b protein_coding processed_transcript MGP_CASTEiJ_T0035979.1 MGP_CASTEiJ_G0019523.1 mouse_genomes_project 13 11013936 11038796 + MGP_CASTEiJ_P0035979 Arid4b protein_coding protein_coding MGP_CASTEiJ_T0035980.1 MGP_CASTEiJ_G0019523.1 mouse_genomes_project 13 11021775 11036298 + Arid4b protein_coding processed_transcript MGP_CASTEiJ_T0035981.1 MGP_CASTEiJ_G0019523.1 mouse_genomes_project 13 11036240 11042795 + Arid4b protein_coding processed_transcript MGP_CASTEiJ_T0012567.1 MGP_CASTEiJ_G0010730.1 mouse_genomes_project 13 65531463 65531821 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006465.1 MGP_CASTEiJ_G0005366.1 mouse_genomes_project 13 112531911 112534186 - Gm15325 lincRNA lincRNA MGP_CASTEiJ_T0036113.1 MGP_CASTEiJ_G0019591.1 mouse_genomes_project 13 19349014 19349905 + MGP_CASTEiJ_P0036113 Vmn1r194 protein_coding protein_coding MGP_CASTEiJ_T0036496.1 MGP_CASTEiJ_G0019760.1 mouse_genomes_project 13 41136553 41158206 - MGP_CASTEiJ_P0036496 Tbc1d7 protein_coding protein_coding MGP_CASTEiJ_T0036497.1 MGP_CASTEiJ_G0019760.1 mouse_genomes_project 13 41136553 41158206 - MGP_CASTEiJ_P0036497 Tbc1d7 protein_coding protein_coding MGP_CASTEiJ_T0037160.1 MGP_CASTEiJ_G0019981.1 mouse_genomes_project 13 66274812 66285207 - MGP_CASTEiJ_P0037160 Zfp87 protein_coding protein_coding MGP_CASTEiJ_T0037161.1 MGP_CASTEiJ_G0019981.1 mouse_genomes_project 13 66276608 66285151 - MGP_CASTEiJ_P0037161 Zfp87 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037162.1 MGP_CASTEiJ_G0019981.1 mouse_genomes_project 13 66277013 66285176 - MGP_CASTEiJ_P0037162 Zfp87 protein_coding protein_coding MGP_CASTEiJ_T0037163.1 MGP_CASTEiJ_G0019981.1 mouse_genomes_project 13 66280074 66285207 - MGP_CASTEiJ_P0037163 Zfp87 protein_coding protein_coding MGP_CASTEiJ_T0036438.1 MGP_CASTEiJ_G0019740.1 mouse_genomes_project 13 36702049 36736217 - MGP_CASTEiJ_P0036438 Slc35b3 protein_coding protein_coding MGP_CASTEiJ_T0036439.1 MGP_CASTEiJ_G0019740.1 mouse_genomes_project 13 36702049 36736555 - MGP_CASTEiJ_P0036439 Slc35b3 protein_coding protein_coding MGP_CASTEiJ_T0036440.1 MGP_CASTEiJ_G0019740.1 mouse_genomes_project 13 36709177 36736202 - MGP_CASTEiJ_P0036440 Slc35b3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006398.1 MGP_CASTEiJ_G0005321.1 mouse_genomes_project 13 50611744 50615064 + Gm26651 lincRNA lincRNA MGP_CASTEiJ_T0036907.1 MGP_CASTEiJ_G0019886.1 mouse_genomes_project 13 55718860 55751015 + MGP_CASTEiJ_P0036907 Smad5 protein_coding protein_coding MGP_CASTEiJ_T0036908.1 MGP_CASTEiJ_G0019886.1 mouse_genomes_project 13 55718889 55741862 + Smad5 protein_coding processed_transcript MGP_CASTEiJ_T0036909.1 MGP_CASTEiJ_G0019886.1 mouse_genomes_project 13 55718902 55748596 + MGP_CASTEiJ_P0036909 Smad5 protein_coding protein_coding MGP_CASTEiJ_T0036910.1 MGP_CASTEiJ_G0019886.1 mouse_genomes_project 13 55718916 55741773 + Smad5 protein_coding processed_transcript MGP_CASTEiJ_T0036911.1 MGP_CASTEiJ_G0019886.1 mouse_genomes_project 13 55719502 55748940 + MGP_CASTEiJ_P0036911 Smad5 protein_coding protein_coding MGP_CASTEiJ_T0036912.1 MGP_CASTEiJ_G0019886.1 mouse_genomes_project 13 55741664 55747629 + Smad5 protein_coding processed_transcript MGP_CASTEiJ_T0036681.1 MGP_CASTEiJ_G0019819.1 mouse_genomes_project 13 51178716 51211336 - MGP_CASTEiJ_P0036681 Diras2 protein_coding protein_coding MGP_CASTEiJ_T0009673.1 MGP_CASTEiJ_G0007861.1 mouse_genomes_project 13 46876188 46876285 + Gm24111 miRNA miRNA MGP_CASTEiJ_T0100579.1 MGP_CASTEiJ_G0037492.1 mouse_genomes_project 13 74748807 74748937 + Gm23127 snoRNA snoRNA MGP_CASTEiJ_T0037930.1 MGP_CASTEiJ_G0020222.1 mouse_genomes_project 13 118305204 118357876 + MGP_CASTEiJ_P0037930 Emb protein_coding protein_coding MGP_CASTEiJ_T0006466.1 MGP_CASTEiJ_G0005367.1 mouse_genomes_project 13 112538508 112540030 + Gm15324 lincRNA lincRNA MGP_CASTEiJ_T0035985.1 MGP_CASTEiJ_G0019526.1 mouse_genomes_project 13 11462851 11476008 + MGP_CASTEiJ_P0035985 Psma2 protein_coding protein_coding MGP_CASTEiJ_T0012559.1 MGP_CASTEiJ_G0010722.1 mouse_genomes_project 13 61972916 61973199 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036230.1 MGP_CASTEiJ_G0019653.1 mouse_genomes_project 13 22073941 22124310 + MGP_CASTEiJ_P0036230 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036231.1 MGP_CASTEiJ_G0019653.1 mouse_genomes_project 13 22090070 22097088 + protein_coding processed_transcript MGP_CASTEiJ_T0036232.1 MGP_CASTEiJ_G0019653.1 mouse_genomes_project 13 22113529 22124948 + MGP_CASTEiJ_P0036232 protein_coding protein_coding MGP_CASTEiJ_T0016614.1 MGP_CASTEiJ_G0014568.1 mouse_genomes_project 13 32704705 32707188 + 1700011B04Rik processed_transcript retained_intron MGP_CASTEiJ_T0016615.1 MGP_CASTEiJ_G0014568.1 mouse_genomes_project 13 32706060 32713414 + 1700011B04Rik processed_transcript lincRNA MGP_CASTEiJ_T0037668.1 MGP_CASTEiJ_G0020143.1 mouse_genomes_project 13 100207090 100266067 - MGP_CASTEiJ_P0037668 Naip2 protein_coding protein_coding MGP_CASTEiJ_T0036928.1 MGP_CASTEiJ_G0019889.1 mouse_genomes_project 13 57070872 57187776 - MGP_CASTEiJ_P0036928 Klhl3 protein_coding protein_coding MGP_CASTEiJ_T0036929.1 MGP_CASTEiJ_G0019889.1 mouse_genomes_project 13 57071618 57176541 - MGP_CASTEiJ_P0036929 Klhl3 protein_coding protein_coding MGP_CASTEiJ_T0036108.1 MGP_CASTEiJ_G0019586.1 mouse_genomes_project 13 19135045 19135444 - MGP_CASTEiJ_P0036108 Hist1h4m protein_coding protein_coding MGP_CASTEiJ_T0016619.1 MGP_CASTEiJ_G0014571.1 mouse_genomes_project 13 68268947 68273420 - Gm17108 processed_transcript processed_transcript MGP_CASTEiJ_T0036118.1 MGP_CASTEiJ_G0019596.1 mouse_genomes_project 13 19497981 19499085 + MGP_CASTEiJ_P0036118 Vmn1r199 protein_coding protein_coding MGP_CASTEiJ_T0035940.1 MGP_CASTEiJ_G0019511.1 mouse_genomes_project 13 9020416 9066474 + MGP_CASTEiJ_P0035940 Heatr1 protein_coding protein_coding MGP_CASTEiJ_T0036029.1 MGP_CASTEiJ_G0019544.1 mouse_genomes_project 13 16738240 16826269 - MGP_CASTEiJ_P0036029 Gpr141 protein_coding protein_coding MGP_CASTEiJ_T0036505.1 MGP_CASTEiJ_G0019767.1 mouse_genomes_project 13 41801427 41819487 + MGP_CASTEiJ_P0036505 Cd83 protein_coding protein_coding MGP_CASTEiJ_T0036506.1 MGP_CASTEiJ_G0019767.1 mouse_genomes_project 13 41801613 41844836 + MGP_CASTEiJ_P0036506 Cd83 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009698.1 MGP_CASTEiJ_G0007886.1 mouse_genomes_project 13 91287943 91288032 + Gm27656 miRNA miRNA MGP_CASTEiJ_T0037183.1 MGP_CASTEiJ_G0019992.1 mouse_genomes_project 13 67176731 67196583 - MGP_CASTEiJ_P0037183 Mtrr protein_coding protein_coding MGP_CASTEiJ_T0036507.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42795885 42797980 + Jarid2 protein_coding processed_transcript MGP_CASTEiJ_T0036508.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42795946 42917513 + MGP_CASTEiJ_P0036508 Jarid2 protein_coding protein_coding MGP_CASTEiJ_T0036509.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42796206 42891286 + MGP_CASTEiJ_P0036509 Jarid2 protein_coding protein_coding MGP_CASTEiJ_T0036510.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42797185 42991951 + MGP_CASTEiJ_P0036510 Jarid2 protein_coding protein_coding MGP_CASTEiJ_T0036511.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42797234 42993041 + MGP_CASTEiJ_P0036511 Jarid2 protein_coding protein_coding MGP_CASTEiJ_T0036512.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42797249 42975215 + MGP_CASTEiJ_P0036512 Jarid2 protein_coding protein_coding MGP_CASTEiJ_T0036513.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42797270 42946554 + Jarid2 protein_coding processed_transcript MGP_CASTEiJ_T0036514.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42797677 42993703 + MGP_CASTEiJ_P0036514 Jarid2 protein_coding protein_coding MGP_CASTEiJ_T0036515.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42797693 42891179 + MGP_CASTEiJ_P0036515 Jarid2 protein_coding protein_coding MGP_CASTEiJ_T0036516.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42797774 42957068 + Jarid2 protein_coding retained_intron MGP_CASTEiJ_T0036517.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42797776 42993700 + Jarid2 protein_coding retained_intron MGP_CASTEiJ_T0036518.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42798003 42956788 + MGP_CASTEiJ_P0036518 Jarid2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036519.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42798264 42946545 + Jarid2 protein_coding processed_transcript MGP_CASTEiJ_T0036520.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42800429 42946517 + Jarid2 protein_coding processed_transcript MGP_CASTEiJ_T0036521.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42909128 42986162 + MGP_CASTEiJ_P0036521 Jarid2 protein_coding protein_coding MGP_CASTEiJ_T0036522.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42909220 42968439 + MGP_CASTEiJ_P0036522 Jarid2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036523.1 MGP_CASTEiJ_G0019768.1 mouse_genomes_project 13 42942083 42991966 + MGP_CASTEiJ_P0036523 Jarid2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100564.1 MGP_CASTEiJ_G0037477.1 mouse_genomes_project 13 32829402 32829527 - Gm22674 snoRNA snoRNA MGP_CASTEiJ_T0037484.1 MGP_CASTEiJ_G0020080.1 mouse_genomes_project 13 92025323 92073038 - MGP_CASTEiJ_P0037484 Zfyve16 protein_coding protein_coding MGP_CASTEiJ_T0037485.1 MGP_CASTEiJ_G0020080.1 mouse_genomes_project 13 92026064 92057050 - Zfyve16 protein_coding retained_intron MGP_CASTEiJ_T0037486.1 MGP_CASTEiJ_G0020080.1 mouse_genomes_project 13 92047444 92048895 - Zfyve16 protein_coding retained_intron MGP_CASTEiJ_T0037487.1 MGP_CASTEiJ_G0020080.1 mouse_genomes_project 13 92053700 92061581 - Zfyve16 protein_coding processed_transcript MGP_CASTEiJ_T0036008.1 MGP_CASTEiJ_G0019537.1 mouse_genomes_project 13 15669533 15828938 + MGP_CASTEiJ_P0036008 Vps41 protein_coding protein_coding MGP_CASTEiJ_T0036879.1 MGP_CASTEiJ_G0019873.1 mouse_genomes_project 13 54682383 54734489 + MGP_CASTEiJ_P0036879 Pcbd2 protein_coding protein_coding MGP_CASTEiJ_T0036880.1 MGP_CASTEiJ_G0019873.1 mouse_genomes_project 13 54682383 54734487 + MGP_CASTEiJ_P0036880 Pcbd2 protein_coding protein_coding MGP_CASTEiJ_T0036122.1 MGP_CASTEiJ_G0019600.1 mouse_genomes_project 13 19616499 19617408 - MGP_CASTEiJ_P0036122 Vmn1r202 protein_coding protein_coding MGP_CASTEiJ_T0036050.1 MGP_CASTEiJ_G0019555.1 mouse_genomes_project 13 18417277 18424276 + MGP_CASTEiJ_P0036050 Zscan12 protein_coding protein_coding MGP_CASTEiJ_T0036051.1 MGP_CASTEiJ_G0019555.1 mouse_genomes_project 13 18417736 18424276 + MGP_CASTEiJ_P0036051 Zscan12 protein_coding protein_coding MGP_CASTEiJ_T0036326.1 MGP_CASTEiJ_G0019702.1 mouse_genomes_project 13 30559041 30573500 + MGP_CASTEiJ_P0036326 Serpinb9b protein_coding protein_coding MGP_CASTEiJ_T0036430.1 MGP_CASTEiJ_G0019736.1 mouse_genomes_project 13 36071011 36229204 + MGP_CASTEiJ_P0036430 Bmp6 protein_coding protein_coding MGP_CASTEiJ_T0102063.1 MGP_CASTEiJ_G0038788.1 mouse_genomes_project 13 31183840 31183999 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0037028.1 MGP_CASTEiJ_G0019926.1 mouse_genomes_project 13 60833192 60838460 - MGP_CASTEiJ_P0037028 Ctsm protein_coding protein_coding MGP_CASTEiJ_T0036921.1 MGP_CASTEiJ_G0019888.1 mouse_genomes_project 13 56437519 56960812 - MGP_CASTEiJ_P0036921 Spock1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036922.1 MGP_CASTEiJ_G0019888.1 mouse_genomes_project 13 56458364 56958288 - MGP_CASTEiJ_P0036922 Spock1 protein_coding protein_coding MGP_CASTEiJ_T0036923.1 MGP_CASTEiJ_G0019888.1 mouse_genomes_project 13 56458376 56958249 - MGP_CASTEiJ_P0036923 Spock1 protein_coding protein_coding MGP_CASTEiJ_T0036924.1 MGP_CASTEiJ_G0019888.1 mouse_genomes_project 13 56463256 56958249 - MGP_CASTEiJ_P0036924 Spock1 protein_coding protein_coding MGP_CASTEiJ_T0036925.1 MGP_CASTEiJ_G0019888.1 mouse_genomes_project 13 56465861 56958265 - MGP_CASTEiJ_P0036925 Spock1 protein_coding protein_coding MGP_CASTEiJ_T0036926.1 MGP_CASTEiJ_G0019888.1 mouse_genomes_project 13 56466446 56957559 - MGP_CASTEiJ_P0036926 Spock1 protein_coding protein_coding MGP_CASTEiJ_T0036927.1 MGP_CASTEiJ_G0019888.1 mouse_genomes_project 13 56471564 56958273 - Spock1 protein_coding retained_intron MGP_CASTEiJ_T0037464.1 MGP_CASTEiJ_G0020075.1 mouse_genomes_project 13 91741842 91897362 - MGP_CASTEiJ_P0037464 Msh3 protein_coding protein_coding MGP_CASTEiJ_T0037465.1 MGP_CASTEiJ_G0020075.1 mouse_genomes_project 13 91741850 91776092 - Msh3 protein_coding processed_transcript MGP_CASTEiJ_T0037466.1 MGP_CASTEiJ_G0020075.1 mouse_genomes_project 13 91741851 91801180 - Msh3 protein_coding retained_intron MGP_CASTEiJ_T0037467.1 MGP_CASTEiJ_G0020075.1 mouse_genomes_project 13 91741852 91897366 - MGP_CASTEiJ_P0037467 Msh3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037468.1 MGP_CASTEiJ_G0020075.1 mouse_genomes_project 13 91741856 91784939 - Msh3 protein_coding retained_intron MGP_CASTEiJ_T0037469.1 MGP_CASTEiJ_G0020075.1 mouse_genomes_project 13 91741856 91897370 - MGP_CASTEiJ_P0037469 Msh3 protein_coding protein_coding MGP_CASTEiJ_T0037470.1 MGP_CASTEiJ_G0020075.1 mouse_genomes_project 13 91742227 91766770 - MGP_CASTEiJ_P0037470 Msh3 protein_coding protein_coding MGP_CASTEiJ_T0037471.1 MGP_CASTEiJ_G0020075.1 mouse_genomes_project 13 91784719 91897352 - MGP_CASTEiJ_P0037471 Msh3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037473.1 MGP_CASTEiJ_G0020075.1 mouse_genomes_project 13 91841280 91843221 - Msh3 protein_coding retained_intron MGP_CASTEiJ_T0037474.1 MGP_CASTEiJ_G0020075.1 mouse_genomes_project 13 91842963 91897363 - MGP_CASTEiJ_P0037474 Msh3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037475.1 MGP_CASTEiJ_G0020075.1 mouse_genomes_project 13 91846337 91888140 - Msh3 protein_coding retained_intron MGP_CASTEiJ_T0037476.1 MGP_CASTEiJ_G0020075.1 mouse_genomes_project 13 91883414 91896882 - Msh3 protein_coding processed_transcript MGP_CASTEiJ_T0037477.1 MGP_CASTEiJ_G0020075.1 mouse_genomes_project 13 91888630 91897320 - Msh3 protein_coding retained_intron MGP_CASTEiJ_T0037478.1 MGP_CASTEiJ_G0020075.1 mouse_genomes_project 13 91893508 91897352 - MGP_CASTEiJ_P0037478 Msh3 protein_coding protein_coding MGP_CASTEiJ_T0037691.1 MGP_CASTEiJ_G0020151.1 mouse_genomes_project 13 100844347 100876900 - MGP_CASTEiJ_P0037691 Cdk7 protein_coding protein_coding MGP_CASTEiJ_T0037190.1 MGP_CASTEiJ_G0019997.1 mouse_genomes_project 13 68184748 68273987 + MGP_CASTEiJ_P0037190 Nsun2 protein_coding protein_coding MGP_CASTEiJ_T0037191.1 MGP_CASTEiJ_G0019997.1 mouse_genomes_project 13 68184770 68264334 + Nsun2 protein_coding processed_transcript MGP_CASTEiJ_T0037195.1 MGP_CASTEiJ_G0019997.1 mouse_genomes_project 13 68270497 68294219 + MGP_CASTEiJ_P0037195 Nsun2 protein_coding protein_coding MGP_CASTEiJ_T0037196.1 MGP_CASTEiJ_G0019997.1 mouse_genomes_project 13 68270541 68294022 + MGP_CASTEiJ_P0037196 Nsun2 protein_coding protein_coding MGP_CASTEiJ_T0037197.1 MGP_CASTEiJ_G0019997.1 mouse_genomes_project 13 68271051 68278221 + Nsun2 protein_coding processed_transcript MGP_CASTEiJ_T0037198.1 MGP_CASTEiJ_G0019997.1 mouse_genomes_project 13 68279860 68288353 + Nsun2 protein_coding retained_intron MGP_CASTEiJ_T0037199.1 MGP_CASTEiJ_G0019997.1 mouse_genomes_project 13 68289463 68290392 + Nsun2 protein_coding retained_intron MGP_CASTEiJ_T0037776.1 MGP_CASTEiJ_G0020175.1 mouse_genomes_project 13 107157134 107312655 - MGP_CASTEiJ_P0037776 Ipo11 protein_coding protein_coding MGP_CASTEiJ_T0037777.1 MGP_CASTEiJ_G0020175.1 mouse_genomes_project 13 107157134 107299699 - MGP_CASTEiJ_P0037777 Ipo11 protein_coding protein_coding MGP_CASTEiJ_T0037778.1 MGP_CASTEiJ_G0020175.1 mouse_genomes_project 13 107157142 107215066 - MGP_CASTEiJ_P0037778 Ipo11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037779.1 MGP_CASTEiJ_G0020175.1 mouse_genomes_project 13 107178236 107225528 - Ipo11 protein_coding retained_intron MGP_CASTEiJ_T0037780.1 MGP_CASTEiJ_G0020175.1 mouse_genomes_project 13 107178343 107203892 - Ipo11 protein_coding retained_intron MGP_CASTEiJ_T0037781.1 MGP_CASTEiJ_G0020175.1 mouse_genomes_project 13 107201284 107214899 - Ipo11 protein_coding processed_transcript MGP_CASTEiJ_T0037782.1 MGP_CASTEiJ_G0020175.1 mouse_genomes_project 13 107201286 107203880 - Ipo11 protein_coding processed_transcript MGP_CASTEiJ_T0037783.1 MGP_CASTEiJ_G0020175.1 mouse_genomes_project 13 107209721 107216103 - Ipo11 protein_coding retained_intron MGP_CASTEiJ_T0037784.1 MGP_CASTEiJ_G0020175.1 mouse_genomes_project 13 107228095 107312642 - Ipo11 protein_coding retained_intron MGP_CASTEiJ_T0037230.1 MGP_CASTEiJ_G0020013.1 mouse_genomes_project 13 72491981 72509929 - MGP_CASTEiJ_P0037230 Slc6a18 protein_coding protein_coding MGP_CASTEiJ_T0037231.1 MGP_CASTEiJ_G0020013.1 mouse_genomes_project 13 72496333 72509835 - MGP_CASTEiJ_P0037231 Slc6a18 protein_coding protein_coding MGP_CASTEiJ_T0036291.1 MGP_CASTEiJ_G0019683.1 mouse_genomes_project 13 27732706 27744280 + Agtr1a protein_coding processed_transcript MGP_CASTEiJ_T0036292.1 MGP_CASTEiJ_G0019683.1 mouse_genomes_project 13 27732706 27779775 + MGP_CASTEiJ_P0036292 Agtr1a protein_coding protein_coding MGP_CASTEiJ_T0003357.1 MGP_CASTEiJ_G0003082.1 mouse_genomes_project 13 66654582 66696498 - 4930525G20Rik antisense antisense MGP_CASTEiJ_T0003332.1 MGP_CASTEiJ_G0003067.1 mouse_genomes_project 13 31420215 31460839 + antisense antisense MGP_CASTEiJ_T0003333.1 MGP_CASTEiJ_G0003067.1 mouse_genomes_project 13 31437885 31445016 + antisense antisense MGP_CASTEiJ_T0037479.1 MGP_CASTEiJ_G0020077.1 mouse_genomes_project 13 91897149 91925423 + MGP_CASTEiJ_P0037479 Dhfr protein_coding protein_coding MGP_CASTEiJ_T0036931.1 MGP_CASTEiJ_G0019891.1 mouse_genomes_project 13 57227316 57233496 + MGP_CASTEiJ_P0036931 Idnk protein_coding protein_coding MGP_CASTEiJ_T0036038.1 MGP_CASTEiJ_G0019549.1 mouse_genomes_project 13 18225156 18226128 + Trim27 protein_coding processed_transcript MGP_CASTEiJ_T0036039.1 MGP_CASTEiJ_G0019549.1 mouse_genomes_project 13 18225924 18240079 + MGP_CASTEiJ_P0036039 Trim27 protein_coding protein_coding MGP_CASTEiJ_T0036040.1 MGP_CASTEiJ_G0019549.1 mouse_genomes_project 13 18226141 18246359 + MGP_CASTEiJ_P0036040 Trim27 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036041.1 MGP_CASTEiJ_G0019549.1 mouse_genomes_project 13 18235562 18236121 + Trim27 protein_coding retained_intron MGP_CASTEiJ_T0036042.1 MGP_CASTEiJ_G0019549.1 mouse_genomes_project 13 18235792 18238172 + MGP_CASTEiJ_P0036042 Trim27 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037293.1 MGP_CASTEiJ_G0020039.1 mouse_genomes_project 13 74974018 74993983 - MGP_CASTEiJ_P0037293 Rfesd protein_coding protein_coding MGP_CASTEiJ_T0037294.1 MGP_CASTEiJ_G0020039.1 mouse_genomes_project 13 74974018 74993833 - MGP_CASTEiJ_P0037294 Rfesd protein_coding protein_coding MGP_CASTEiJ_T0037295.1 MGP_CASTEiJ_G0020039.1 mouse_genomes_project 13 74974018 74993877 - MGP_CASTEiJ_P0037295 Rfesd protein_coding protein_coding MGP_CASTEiJ_T0037257.1 MGP_CASTEiJ_G0020024.1 mouse_genomes_project 13 73016521 73061843 - MGP_CASTEiJ_P0037257 Exoc3 protein_coding protein_coding MGP_CASTEiJ_T0037258.1 MGP_CASTEiJ_G0020024.1 mouse_genomes_project 13 73018804 73061841 - MGP_CASTEiJ_P0037258 Exoc3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036132.1 MGP_CASTEiJ_G0019610.1 mouse_genomes_project 13 20106676 20107542 - MGP_CASTEiJ_P0036132 Vmn1r220 protein_coding protein_coding MGP_CASTEiJ_T0036468.1 MGP_CASTEiJ_G0019753.1 mouse_genomes_project 13 39179021 39231718 - MGP_CASTEiJ_P0036468 Nedd9 protein_coding protein_coding MGP_CASTEiJ_T0036469.1 MGP_CASTEiJ_G0019753.1 mouse_genomes_project 13 39179022 39372390 - MGP_CASTEiJ_P0036469 Nedd9 protein_coding protein_coding MGP_CASTEiJ_T0036470.1 MGP_CASTEiJ_G0019753.1 mouse_genomes_project 13 39180434 39214773 - MGP_CASTEiJ_P0036470 Nedd9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037641.1 MGP_CASTEiJ_G0020135.1 mouse_genomes_project 13 99340890 99365613 - MGP_CASTEiJ_P0037641 Ptcd2 protein_coding protein_coding MGP_CASTEiJ_T0000855.1 MGP_CASTEiJ_G0000794.1 mouse_genomes_project 13 90061519 90061932 + TEC TEC MGP_CASTEiJ_T0012577.1 MGP_CASTEiJ_G0010740.1 mouse_genomes_project 13 77333178 77334169 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037099.1 MGP_CASTEiJ_G0019950.1 mouse_genomes_project 13 64435545 64436493 + MGP_CASTEiJ_P0037099 Olfr465-ps1 protein_coding protein_coding MGP_CASTEiJ_T0102049.1 MGP_CASTEiJ_G0038774.1 mouse_genomes_project 13 19980764 19981001 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0036251.1 MGP_CASTEiJ_G0019663.1 mouse_genomes_project 13 24422731 24431557 + MGP_CASTEiJ_P0036251 Prl3b1 protein_coding protein_coding MGP_CASTEiJ_T0037003.1 MGP_CASTEiJ_G0019908.1 mouse_genomes_project 13 58939527 58943618 - MGP_CASTEiJ_P0037003 1700014D04Rik protein_coding protein_coding MGP_CASTEiJ_T0037004.1 MGP_CASTEiJ_G0019908.1 mouse_genomes_project 13 58940653 58941448 - MGP_CASTEiJ_P0037004 1700014D04Rik protein_coding protein_coding MGP_CASTEiJ_T0037005.1 MGP_CASTEiJ_G0019908.1 mouse_genomes_project 13 58942404 58945446 - MGP_CASTEiJ_P0037005 1700014D04Rik protein_coding protein_coding MGP_CASTEiJ_T0036865.1 MGP_CASTEiJ_G0019866.1 mouse_genomes_project 13 54474543 54506384 - MGP_CASTEiJ_P0036865 Fam193b protein_coding protein_coding MGP_CASTEiJ_T0006409.1 MGP_CASTEiJ_G0005325.1 mouse_genomes_project 13 53768497 53769041 + Gm29431 lincRNA lincRNA MGP_CASTEiJ_T0037133.1 MGP_CASTEiJ_G0019964.1 mouse_genomes_project 13 65855461 66709149 + MGP_CASTEiJ_P0037133 Gm10037 protein_coding protein_coding MGP_CASTEiJ_T0037188.1 MGP_CASTEiJ_G0019996.1 mouse_genomes_project 13 68141775 68187021 - MGP_CASTEiJ_P0037188 Papd7 protein_coding protein_coding MGP_CASTEiJ_T0037189.1 MGP_CASTEiJ_G0019996.1 mouse_genomes_project 13 68141778 68184867 - MGP_CASTEiJ_P0037189 Papd7 protein_coding protein_coding MGP_CASTEiJ_T0102036.1 MGP_CASTEiJ_G0038761.1 mouse_genomes_project 13 19511063 19513449 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0006354.1 MGP_CASTEiJ_G0005290.1 mouse_genomes_project 13 26300786 26309181 + Gm26735 lincRNA lincRNA MGP_CASTEiJ_T0037772.1 MGP_CASTEiJ_G0020172.1 mouse_genomes_project 13 105435501 105484288 + MGP_CASTEiJ_P0037772 4933425L06Rik protein_coding protein_coding MGP_CASTEiJ_T0037669.1 MGP_CASTEiJ_G0020144.1 mouse_genomes_project 13 100292652 100305372 - MGP_CASTEiJ_P0037669 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006410.1 MGP_CASTEiJ_G0005326.1 mouse_genomes_project 13 53793983 53795228 + 5330429C05Rik lincRNA lincRNA MGP_CASTEiJ_T0037589.1 MGP_CASTEiJ_G0020117.1 mouse_genomes_project 13 96795215 96809300 - MGP_CASTEiJ_P0037589 1700029F12Rik protein_coding protein_coding MGP_CASTEiJ_T0037593.1 MGP_CASTEiJ_G0020120.1 mouse_genomes_project 13 96928635 96970142 + MGP_CASTEiJ_P0037593 Gfm2 protein_coding protein_coding MGP_CASTEiJ_T0037594.1 MGP_CASTEiJ_G0020120.1 mouse_genomes_project 13 96928635 96947511 + MGP_CASTEiJ_P0037594 Gfm2 protein_coding protein_coding MGP_CASTEiJ_T0037595.1 MGP_CASTEiJ_G0020120.1 mouse_genomes_project 13 96928675 96968306 + Gfm2 protein_coding retained_intron MGP_CASTEiJ_T0037596.1 MGP_CASTEiJ_G0020120.1 mouse_genomes_project 13 96928676 96970152 + MGP_CASTEiJ_P0037596 Gfm2 protein_coding protein_coding MGP_CASTEiJ_T0037597.1 MGP_CASTEiJ_G0020120.1 mouse_genomes_project 13 96928683 96961139 + MGP_CASTEiJ_P0037597 Gfm2 protein_coding protein_coding MGP_CASTEiJ_T0037598.1 MGP_CASTEiJ_G0020120.1 mouse_genomes_project 13 96928696 96936518 + Gfm2 protein_coding retained_intron MGP_CASTEiJ_T0037599.1 MGP_CASTEiJ_G0020120.1 mouse_genomes_project 13 96928700 96974911 + MGP_CASTEiJ_P0037599 Gfm2 protein_coding protein_coding MGP_CASTEiJ_T0037600.1 MGP_CASTEiJ_G0020120.1 mouse_genomes_project 13 96928706 96938257 + MGP_CASTEiJ_P0037600 Gfm2 protein_coding protein_coding MGP_CASTEiJ_T0037601.1 MGP_CASTEiJ_G0020120.1 mouse_genomes_project 13 96928738 96970152 + MGP_CASTEiJ_P0037601 Gfm2 protein_coding protein_coding MGP_CASTEiJ_T0037602.1 MGP_CASTEiJ_G0020120.1 mouse_genomes_project 13 96942394 96954473 + MGP_CASTEiJ_P0037602 Gfm2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037603.1 MGP_CASTEiJ_G0020120.1 mouse_genomes_project 13 96951941 96970152 + Gfm2 protein_coding retained_intron MGP_CASTEiJ_T0037604.1 MGP_CASTEiJ_G0020120.1 mouse_genomes_project 13 96965109 96971182 + Gfm2 protein_coding retained_intron MGP_CASTEiJ_T0009706.1 MGP_CASTEiJ_G0007894.1 mouse_genomes_project 13 113800166 113800257 + Mir449a miRNA miRNA MGP_CASTEiJ_T0036479.1 MGP_CASTEiJ_G0019758.1 mouse_genomes_project 13 40234278 40241053 + MGP_CASTEiJ_P0036479 Edn1 protein_coding protein_coding MGP_CASTEiJ_T0036399.1 MGP_CASTEiJ_G0019727.1 mouse_genomes_project 13 34338629 34351688 - MGP_CASTEiJ_P0036399 Nrn1 protein_coding protein_coding MGP_CASTEiJ_T0036400.1 MGP_CASTEiJ_G0019727.1 mouse_genomes_project 13 34339461 34345206 - MGP_CASTEiJ_P0036400 Nrn1 protein_coding protein_coding MGP_CASTEiJ_T0012570.1 MGP_CASTEiJ_G0010733.1 mouse_genomes_project 13 67962960 67963953 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036253.1 MGP_CASTEiJ_G0019665.1 mouse_genomes_project 13 24502398 24509008 + MGP_CASTEiJ_P0036253 Prl6a1 protein_coding protein_coding MGP_CASTEiJ_T0036254.1 MGP_CASTEiJ_G0019665.1 mouse_genomes_project 13 24503721 24509008 + MGP_CASTEiJ_P0036254 Prl6a1 protein_coding protein_coding MGP_CASTEiJ_T0037646.1 MGP_CASTEiJ_G0020139.1 mouse_genomes_project 13 100005783 100079280 - MGP_CASTEiJ_P0037646 Mccc2 protein_coding protein_coding MGP_CASTEiJ_T0000857.1 MGP_CASTEiJ_G0000796.1 mouse_genomes_project 13 98464375 98464991 - TEC TEC MGP_CASTEiJ_T0036159.1 MGP_CASTEiJ_G0019629.1 mouse_genomes_project 13 20797598 20799160 + MGP_CASTEiJ_P0036159 Hist1h1c protein_coding protein_coding MGP_CASTEiJ_T0037278.1 MGP_CASTEiJ_G0020029.1 mouse_genomes_project 13 73217726 73222132 - MGP_CASTEiJ_P0037278 Lrrc14b protein_coding protein_coding MGP_CASTEiJ_T0012594.1 MGP_CASTEiJ_G0010757.1 mouse_genomes_project 13 112000192 112000433 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009660.1 MGP_CASTEiJ_G0007848.1 mouse_genomes_project 13 7167217 7167318 - Gm23415 miRNA miRNA MGP_CASTEiJ_T0016620.1 MGP_CASTEiJ_G0014572.1 mouse_genomes_project 13 79938676 79939975 - 1700023H06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0037154.1 MGP_CASTEiJ_G0019978.1 mouse_genomes_project 13 66227630 66240982 - MGP_CASTEiJ_P0037154 Zfp874b protein_coding protein_coding MGP_CASTEiJ_T0036244.1 MGP_CASTEiJ_G0019659.1 mouse_genomes_project 13 24286655 24323485 + MGP_CASTEiJ_P0036244 protein_coding protein_coding MGP_CASTEiJ_T0037332.1 MGP_CASTEiJ_G0020050.1 mouse_genomes_project 13 80149192 80717189 - MGP_CASTEiJ_P0037332 Adgrv1 protein_coding protein_coding MGP_CASTEiJ_T0037333.1 MGP_CASTEiJ_G0020050.1 mouse_genomes_project 13 80149192 80409427 - MGP_CASTEiJ_P0037333 Adgrv1 protein_coding protein_coding MGP_CASTEiJ_T0037334.1 MGP_CASTEiJ_G0020050.1 mouse_genomes_project 13 80149193 80525499 - MGP_CASTEiJ_P0037334 Adgrv1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037335.1 MGP_CASTEiJ_G0020050.1 mouse_genomes_project 13 80149507 80717062 - MGP_CASTEiJ_P0037335 Adgrv1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037336.1 MGP_CASTEiJ_G0020050.1 mouse_genomes_project 13 80149507 80676138 - MGP_CASTEiJ_P0037336 Adgrv1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037337.1 MGP_CASTEiJ_G0020050.1 mouse_genomes_project 13 80161049 80408948 - Adgrv1 protein_coding processed_transcript MGP_CASTEiJ_T0037338.1 MGP_CASTEiJ_G0020050.1 mouse_genomes_project 13 80464821 80717088 - MGP_CASTEiJ_P0037338 Adgrv1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037339.1 MGP_CASTEiJ_G0020050.1 mouse_genomes_project 13 80584814 80656067 - MGP_CASTEiJ_P0037339 Adgrv1 protein_coding protein_coding MGP_CASTEiJ_T0037340.1 MGP_CASTEiJ_G0020050.1 mouse_genomes_project 13 80584815 80671547 - Adgrv1 protein_coding retained_intron MGP_CASTEiJ_T0037341.1 MGP_CASTEiJ_G0020050.1 mouse_genomes_project 13 80584815 80614366 - Adgrv1 protein_coding retained_intron MGP_CASTEiJ_T0037342.1 MGP_CASTEiJ_G0020050.1 mouse_genomes_project 13 80623691 80626771 - Adgrv1 protein_coding retained_intron MGP_CASTEiJ_T0037343.1 MGP_CASTEiJ_G0020050.1 mouse_genomes_project 13 80638424 80640751 - Adgrv1 protein_coding retained_intron MGP_CASTEiJ_T0037344.1 MGP_CASTEiJ_G0020050.1 mouse_genomes_project 13 80642210 80717174 - MGP_CASTEiJ_P0037344 Adgrv1 protein_coding protein_coding MGP_CASTEiJ_T0037345.1 MGP_CASTEiJ_G0020050.1 mouse_genomes_project 13 80663064 80717174 - MGP_CASTEiJ_P0037345 Adgrv1 protein_coding protein_coding MGP_CASTEiJ_T0037346.1 MGP_CASTEiJ_G0020050.1 mouse_genomes_project 13 80664672 80717176 - MGP_CASTEiJ_P0037346 Adgrv1 protein_coding protein_coding MGP_CASTEiJ_T0037347.1 MGP_CASTEiJ_G0020050.1 mouse_genomes_project 13 80666972 80670771 - Adgrv1 protein_coding retained_intron MGP_CASTEiJ_T0012517.1 MGP_CASTEiJ_G0010680.1 mouse_genomes_project 13 18959129 18960126 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0036582.1 MGP_CASTEiJ_G0019789.1 mouse_genomes_project 13 46923505 46971129 - MGP_CASTEiJ_P0036582 Ptpdc1 protein_coding protein_coding MGP_CASTEiJ_T0036935.1 MGP_CASTEiJ_G0019893.1 mouse_genomes_project 13 57307961 57353312 - MGP_CASTEiJ_P0036935 Gkap1 protein_coding protein_coding MGP_CASTEiJ_T0099335.1 MGP_CASTEiJ_G0036248.1 mouse_genomes_project 13 11478957 11479070 - Gm25444 snRNA snRNA MGP_CASTEiJ_T0036820.1 MGP_CASTEiJ_G0019849.1 mouse_genomes_project 13 54034736 54035323 - MGP_CASTEiJ_P0036820 Gm17617 protein_coding protein_coding MGP_CASTEiJ_T0009661.1 MGP_CASTEiJ_G0007849.1 mouse_genomes_project 13 14619981 14620138 + Mir466i miRNA miRNA MGP_CASTEiJ_T0006392.1 MGP_CASTEiJ_G0005316.1 mouse_genomes_project 13 46246391 46311406 - 4931429P17Rik lincRNA lincRNA MGP_CASTEiJ_T0036327.1 MGP_CASTEiJ_G0019703.1 mouse_genomes_project 13 30613822 30626176 + MGP_CASTEiJ_P0036327 Serpinb1b protein_coding protein_coding MGP_CASTEiJ_T0037659.1 MGP_CASTEiJ_G0020142.1 mouse_genomes_project 13 100188890 100200422 + MGP_CASTEiJ_P0037659 Smn1 protein_coding protein_coding MGP_CASTEiJ_T0037660.1 MGP_CASTEiJ_G0020142.1 mouse_genomes_project 13 100188896 100191177 + Smn1 protein_coding retained_intron MGP_CASTEiJ_T0037661.1 MGP_CASTEiJ_G0020142.1 mouse_genomes_project 13 100188896 100191845 + MGP_CASTEiJ_P0037661 Smn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037662.1 MGP_CASTEiJ_G0020142.1 mouse_genomes_project 13 100188932 100200212 + MGP_CASTEiJ_P0037662 Smn1 protein_coding protein_coding MGP_CASTEiJ_T0037663.1 MGP_CASTEiJ_G0020142.1 mouse_genomes_project 13 100188962 100194169 + MGP_CASTEiJ_P0037663 Smn1 protein_coding protein_coding MGP_CASTEiJ_T0037664.1 MGP_CASTEiJ_G0020142.1 mouse_genomes_project 13 100190162 100190970 + Smn1 protein_coding retained_intron MGP_CASTEiJ_T0037665.1 MGP_CASTEiJ_G0020142.1 mouse_genomes_project 13 100191907 100192663 + Smn1 protein_coding retained_intron MGP_CASTEiJ_T0037666.1 MGP_CASTEiJ_G0020142.1 mouse_genomes_project 13 100193997 100200422 + Smn1 protein_coding retained_intron MGP_CASTEiJ_T0037667.1 MGP_CASTEiJ_G0020142.1 mouse_genomes_project 13 100198132 100200182 + Smn1 protein_coding retained_intron MGP_CASTEiJ_T0100558.1 MGP_CASTEiJ_G0037471.1 mouse_genomes_project 13 15888945 15889079 + Gm26172 snoRNA snoRNA MGP_CASTEiJ_T0036114.1 MGP_CASTEiJ_G0019592.1 mouse_genomes_project 13 19377056 19378007 + MGP_CASTEiJ_P0036114 Vmn1r195 protein_coding protein_coding MGP_CASTEiJ_T0036129.1 MGP_CASTEiJ_G0019607.1 mouse_genomes_project 13 20068581 20069484 + MGP_CASTEiJ_P0036129 Vmn1r215 protein_coding protein_coding MGP_CASTEiJ_T0003338.1 MGP_CASTEiJ_G0003072.1 mouse_genomes_project 13 41097715 41105647 - Gm15813 antisense antisense MGP_CASTEiJ_T0006393.1 MGP_CASTEiJ_G0005317.1 mouse_genomes_project 13 46338761 46573256 - A330033J07Rik lincRNA lincRNA MGP_CASTEiJ_T0006394.1 MGP_CASTEiJ_G0005317.1 mouse_genomes_project 13 46547714 46572714 - A330033J07Rik lincRNA lincRNA MGP_CASTEiJ_T0036001.1 MGP_CASTEiJ_G0019535.1 mouse_genomes_project 13 14878303 14885023 - MGP_CASTEiJ_P0036001 Yae1d1 protein_coding protein_coding MGP_CASTEiJ_T0037841.1 MGP_CASTEiJ_G0020190.1 mouse_genomes_project 13 112083702 112156843 - MGP_CASTEiJ_P0037841 Gpbp1 protein_coding protein_coding MGP_CASTEiJ_T0037842.1 MGP_CASTEiJ_G0020190.1 mouse_genomes_project 13 112083954 112156760 - MGP_CASTEiJ_P0037842 Gpbp1 protein_coding protein_coding MGP_CASTEiJ_T0037843.1 MGP_CASTEiJ_G0020190.1 mouse_genomes_project 13 112084180 112154617 - MGP_CASTEiJ_P0037843 Gpbp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0037844.1 MGP_CASTEiJ_G0020190.1 mouse_genomes_project 13 112097880 112115709 - Gpbp1 protein_coding processed_transcript MGP_CASTEiJ_T0037845.1 MGP_CASTEiJ_G0020190.1 mouse_genomes_project 13 112100464 112115668 - Gpbp1 protein_coding processed_transcript MGP_CASTEiJ_T0037846.1 MGP_CASTEiJ_G0020190.1 mouse_genomes_project 13 112100534 112115709 - Gpbp1 protein_coding retained_intron MGP_CASTEiJ_T0036796.1 MGP_CASTEiJ_G0019846.1 mouse_genomes_project 13 53892938 53908578 - MGP_CASTEiJ_P0036796 Hk3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036797.1 MGP_CASTEiJ_G0019846.1 mouse_genomes_project 13 53893014 53908186 - MGP_CASTEiJ_P0036797 Hk3 protein_coding protein_coding MGP_CASTEiJ_T0036798.1 MGP_CASTEiJ_G0019846.1 mouse_genomes_project 13 53893117 53908594 - MGP_CASTEiJ_P0036798 Hk3 protein_coding protein_coding MGP_CASTEiJ_T0036799.1 MGP_CASTEiJ_G0019846.1 mouse_genomes_project 13 53902003 53908579 - MGP_CASTEiJ_P0036799 Hk3 protein_coding protein_coding MGP_CASTEiJ_T0036800.1 MGP_CASTEiJ_G0019846.1 mouse_genomes_project 13 53902053 53908604 - MGP_CASTEiJ_P0036800 Hk3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036801.1 MGP_CASTEiJ_G0019846.1 mouse_genomes_project 13 53902739 53908499 - MGP_CASTEiJ_P0036801 Hk3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036119.1 MGP_CASTEiJ_G0019597.1 mouse_genomes_project 13 19511150 19513446 + MGP_CASTEiJ_P0036119 Vmn1r209 protein_coding protein_coding MGP_CASTEiJ_T0037006.1 MGP_CASTEiJ_G0019909.1 mouse_genomes_project 13 58971777 59031966 - MGP_CASTEiJ_P0037006 Zcchc6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037007.1 MGP_CASTEiJ_G0019909.1 mouse_genomes_project 13 58972397 59031917 - MGP_CASTEiJ_P0037007 Zcchc6 protein_coding protein_coding MGP_CASTEiJ_T0036962.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58624459 58741846 - MGP_CASTEiJ_P0036962 Agtpbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0036963.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58624465 58625154 - Agtpbp1 protein_coding processed_transcript MGP_CASTEiJ_T0036964.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58624466 58741933 - MGP_CASTEiJ_P0036964 Agtpbp1 protein_coding protein_coding MGP_CASTEiJ_T0036965.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58624468 58716467 - MGP_CASTEiJ_P0036965 Agtpbp1 protein_coding protein_coding MGP_CASTEiJ_T0036966.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58624805 58741933 - MGP_CASTEiJ_P0036966 Agtpbp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036967.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58624805 58741585 - MGP_CASTEiJ_P0036967 Agtpbp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036968.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58628751 58729047 - MGP_CASTEiJ_P0036968 Agtpbp1 protein_coding protein_coding MGP_CASTEiJ_T0036969.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58650542 58659543 - Agtpbp1 protein_coding processed_transcript MGP_CASTEiJ_T0036970.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58657264 58741933 - MGP_CASTEiJ_P0036970 Agtpbp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036971.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58673898 58741933 - MGP_CASTEiJ_P0036971 Agtpbp1 protein_coding protein_coding MGP_CASTEiJ_T0036972.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58673908 58741933 - MGP_CASTEiJ_P0036972 Agtpbp1 protein_coding protein_coding MGP_CASTEiJ_T0036973.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58693587 58696303 - Agtpbp1 protein_coding processed_transcript MGP_CASTEiJ_T0036974.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58694607 58741933 - MGP_CASTEiJ_P0036974 Agtpbp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036975.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58696314 58717353 - Agtpbp1 protein_coding processed_transcript MGP_CASTEiJ_T0036976.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58701329 58741933 - MGP_CASTEiJ_P0036976 Agtpbp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036977.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58715175 58744778 - MGP_CASTEiJ_P0036977 Agtpbp1 protein_coding protein_coding MGP_CASTEiJ_T0036978.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58715183 58741582 - MGP_CASTEiJ_P0036978 Agtpbp1 protein_coding protein_coding MGP_CASTEiJ_T0036979.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58715313 58782772 - MGP_CASTEiJ_P0036979 Agtpbp1 protein_coding protein_coding MGP_CASTEiJ_T0036980.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58719519 58741700 - MGP_CASTEiJ_P0036980 Agtpbp1 protein_coding protein_coding MGP_CASTEiJ_T0036982.1 MGP_CASTEiJ_G0019901.1 mouse_genomes_project 13 58776633 58782788 - Agtpbp1 protein_coding processed_transcript MGP_CASTEiJ_T0012515.1 MGP_CASTEiJ_G0010678.1 mouse_genomes_project 13 18438588 18439028 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102070.1 MGP_CASTEiJ_G0038795.1 mouse_genomes_project 13 57500505 57502356 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0036183.1 MGP_CASTEiJ_G0019643.1 mouse_genomes_project 13 21024134 21065448 - MGP_CASTEiJ_P0036183 Scgn protein_coding protein_coding MGP_CASTEiJ_T0036184.1 MGP_CASTEiJ_G0019643.1 mouse_genomes_project 13 21034557 21040227 - Scgn protein_coding processed_transcript MGP_CASTEiJ_T0012589.1 MGP_CASTEiJ_G0010752.1 mouse_genomes_project 13 100920594 100920924 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037686.1 MGP_CASTEiJ_G0020149.1 mouse_genomes_project 13 100790548 100806950 + MGP_CASTEiJ_P0037686 protein_coding protein_coding MGP_CASTEiJ_T0037687.1 MGP_CASTEiJ_G0020149.1 mouse_genomes_project 13 100790931 100794106 + protein_coding retained_intron MGP_CASTEiJ_T0037688.1 MGP_CASTEiJ_G0020149.1 mouse_genomes_project 13 100791195 100794184 + protein_coding retained_intron MGP_CASTEiJ_T0100554.1 MGP_CASTEiJ_G0037467.1 mouse_genomes_project 13 5468417 5468536 - snoRNA snoRNA MGP_CASTEiJ_T0036653.1 MGP_CASTEiJ_G0019812.1 mouse_genomes_project 13 50003000 50019366 + MGP_CASTEiJ_P0036653 S1pr3 protein_coding protein_coding MGP_CASTEiJ_T0011020.1 MGP_CASTEiJ_G0009208.1 mouse_genomes_project 13 41025488 41025751 - Gm26086 misc_RNA misc_RNA MGP_CASTEiJ_T0036271.1 MGP_CASTEiJ_G0019675.1 mouse_genomes_project 13 24925024 24933563 - MGP_CASTEiJ_P0036271 Prl7d1 protein_coding protein_coding MGP_CASTEiJ_T0006454.1 MGP_CASTEiJ_G0005356.1 mouse_genomes_project 13 99078179 99088098 - 2310020H05Rik lincRNA lincRNA MGP_CASTEiJ_T0101526.1 MGP_CASTEiJ_G0038417.1 mouse_genomes_project 13 31519331 31523404 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101527.1 MGP_CASTEiJ_G0038417.1 mouse_genomes_project 13 31520724 31521281 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0016606.1 MGP_CASTEiJ_G0014566.1 mouse_genomes_project 13 25775447 25835281 - processed_transcript processed_transcript MGP_CASTEiJ_T0016607.1 MGP_CASTEiJ_G0014566.1 mouse_genomes_project 13 25776191 25793406 - processed_transcript processed_transcript MGP_CASTEiJ_T0016608.1 MGP_CASTEiJ_G0014566.1 mouse_genomes_project 13 25776191 26238198 - processed_transcript processed_transcript MGP_CASTEiJ_T0016609.1 MGP_CASTEiJ_G0014566.1 mouse_genomes_project 13 25776354 25829673 - processed_transcript processed_transcript MGP_CASTEiJ_T0016610.1 MGP_CASTEiJ_G0014566.1 mouse_genomes_project 13 25818631 25829832 - processed_transcript processed_transcript MGP_CASTEiJ_T0016611.1 MGP_CASTEiJ_G0014566.1 mouse_genomes_project 13 25877586 26236029 - processed_transcript processed_transcript MGP_CASTEiJ_T0016612.1 MGP_CASTEiJ_G0014566.1 mouse_genomes_project 13 25997994 26237922 - processed_transcript processed_transcript MGP_CASTEiJ_T0037348.1 MGP_CASTEiJ_G0020051.1 mouse_genomes_project 13 80747607 80761503 + MGP_CASTEiJ_P0037348 Lysmd3 protein_coding protein_coding MGP_CASTEiJ_T0036772.1 MGP_CASTEiJ_G0019843.1 mouse_genomes_project 13 53656576 53659942 + MGP_CASTEiJ_P0036772 Eif4e1b protein_coding protein_coding MGP_CASTEiJ_T0036773.1 MGP_CASTEiJ_G0019843.1 mouse_genomes_project 13 53656579 53659220 + MGP_CASTEiJ_P0036773 Eif4e1b protein_coding protein_coding MGP_CASTEiJ_T0036774.1 MGP_CASTEiJ_G0019843.1 mouse_genomes_project 13 53656579 53659430 + MGP_CASTEiJ_P0036774 Eif4e1b protein_coding protein_coding MGP_CASTEiJ_T0036775.1 MGP_CASTEiJ_G0019843.1 mouse_genomes_project 13 53656579 53659942 + MGP_CASTEiJ_P0036775 Eif4e1b protein_coding protein_coding MGP_CASTEiJ_T0036776.1 MGP_CASTEiJ_G0019843.1 mouse_genomes_project 13 53656579 53660031 + MGP_CASTEiJ_P0036776 Eif4e1b protein_coding protein_coding MGP_CASTEiJ_T0036777.1 MGP_CASTEiJ_G0019843.1 mouse_genomes_project 13 53656581 53659943 + MGP_CASTEiJ_P0036777 Eif4e1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0036778.1 MGP_CASTEiJ_G0019843.1 mouse_genomes_project 13 53656581 53660979 + MGP_CASTEiJ_P0036778 Eif4e1b protein_coding protein_coding MGP_CASTEiJ_T0036779.1 MGP_CASTEiJ_G0019843.1 mouse_genomes_project 13 53656581 53659951 + MGP_CASTEiJ_P0036779 Eif4e1b protein_coding protein_coding MGP_CASTEiJ_T0036780.1 MGP_CASTEiJ_G0019843.1 mouse_genomes_project 13 53656591 53660971 + MGP_CASTEiJ_P0036780 Eif4e1b protein_coding protein_coding MGP_CASTEiJ_T0036781.1 MGP_CASTEiJ_G0019843.1 mouse_genomes_project 13 53656598 53660038 + MGP_CASTEiJ_P0036781 Eif4e1b protein_coding protein_coding MGP_CASTEiJ_T0036896.1 MGP_CASTEiJ_G0019879.1 mouse_genomes_project 13 55272888 55280778 - MGP_CASTEiJ_P0036896 Cxcl14 protein_coding protein_coding MGP_CASTEiJ_T0003327.1 MGP_CASTEiJ_G0003063.1 mouse_genomes_project 13 21859595 21864854 + 1700016G14Rik antisense antisense MGP_CASTEiJ_T0003342.1 MGP_CASTEiJ_G0003076.1 mouse_genomes_project 13 54540635 54543238 - Gm15911 antisense antisense MGP_CASTEiJ_T0037184.1 MGP_CASTEiJ_G0019993.1 mouse_genomes_project 13 67196703 67206514 + MGP_CASTEiJ_P0037184 Fastkd3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037185.1 MGP_CASTEiJ_G0019993.1 mouse_genomes_project 13 67196708 67206764 + MGP_CASTEiJ_P0037185 Fastkd3 protein_coding protein_coding MGP_CASTEiJ_T0037795.1 MGP_CASTEiJ_G0020179.1 mouse_genomes_project 13 108176591 108345483 - MGP_CASTEiJ_P0037795 Zswim6 protein_coding protein_coding MGP_CASTEiJ_T0012568.1 MGP_CASTEiJ_G0010731.1 mouse_genomes_project 13 66216114 66216814 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099352.1 MGP_CASTEiJ_G0036265.1 mouse_genomes_project 13 45125714 45125818 + Gm22960 snRNA snRNA MGP_CASTEiJ_T0037026.1 MGP_CASTEiJ_G0019924.1 mouse_genomes_project 13 60538206 60546661 - MGP_CASTEiJ_P0037026 Cts8 protein_coding protein_coding MGP_CASTEiJ_T0037244.1 MGP_CASTEiJ_G0020017.1 mouse_genomes_project 13 72741995 72770879 - MGP_CASTEiJ_P0037244 Trip13 protein_coding protein_coding MGP_CASTEiJ_T0006408.1 MGP_CASTEiJ_G0005324.1 mouse_genomes_project 13 53244068 53244311 - Gm16248 lincRNA lincRNA MGP_CASTEiJ_T0009668.1 MGP_CASTEiJ_G0007856.1 mouse_genomes_project 13 26041600 26041693 - Mir6368 miRNA miRNA MGP_CASTEiJ_T0036156.1 MGP_CASTEiJ_G0019628.1 mouse_genomes_project 13 20759789 20766188 - MGP_CASTEiJ_P0036156 Hfe protein_coding protein_coding MGP_CASTEiJ_T0036157.1 MGP_CASTEiJ_G0019628.1 mouse_genomes_project 13 20759789 20766188 - MGP_CASTEiJ_P0036157 Hfe protein_coding protein_coding MGP_CASTEiJ_T0036158.1 MGP_CASTEiJ_G0019628.1 mouse_genomes_project 13 20759789 20766188 - MGP_CASTEiJ_P0036158 Hfe protein_coding protein_coding MGP_CASTEiJ_T0037182.1 MGP_CASTEiJ_G0019991.1 mouse_genomes_project 13 66740489 66741087 + MGP_CASTEiJ_P0037182 BC048507 protein_coding protein_coding MGP_CASTEiJ_T0036937.1 MGP_CASTEiJ_G0019895.1 mouse_genomes_project 13 57469406 57473960 - MGP_CASTEiJ_P0036937 2210016F16Rik protein_coding protein_coding MGP_CASTEiJ_T0012556.1 MGP_CASTEiJ_G0010719.1 mouse_genomes_project 13 47904515 47909824 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037898.1 MGP_CASTEiJ_G0020211.1 mouse_genomes_project 13 114450874 114451655 - MGP_CASTEiJ_P0037898 Hspb3 protein_coding protein_coding MGP_CASTEiJ_T0036092.1 MGP_CASTEiJ_G0019579.1 mouse_genomes_project 13 18847342 18847729 - MGP_CASTEiJ_P0036092 Hist1h3i protein_coding protein_coding MGP_CASTEiJ_T0037406.1 MGP_CASTEiJ_G0020060.1 mouse_genomes_project 13 88125924 88546791 + MGP_CASTEiJ_P0037406 Edil3 protein_coding protein_coding MGP_CASTEiJ_T0037407.1 MGP_CASTEiJ_G0020060.1 mouse_genomes_project 13 88125929 88682372 + MGP_CASTEiJ_P0037407 Edil3 protein_coding protein_coding MGP_CASTEiJ_T0037408.1 MGP_CASTEiJ_G0020060.1 mouse_genomes_project 13 88125940 88480842 + Edil3 protein_coding processed_transcript MGP_CASTEiJ_T0037409.1 MGP_CASTEiJ_G0020060.1 mouse_genomes_project 13 88125963 88682391 + MGP_CASTEiJ_P0037409 Edil3 protein_coding protein_coding MGP_CASTEiJ_T0037410.1 MGP_CASTEiJ_G0020060.1 mouse_genomes_project 13 88126009 88303902 + Edil3 protein_coding retained_intron MGP_CASTEiJ_T0037411.1 MGP_CASTEiJ_G0020060.1 mouse_genomes_project 13 88126012 88134871 + Edil3 protein_coding processed_transcript MGP_CASTEiJ_T0037412.1 MGP_CASTEiJ_G0020060.1 mouse_genomes_project 13 88126066 88375104 + Edil3 protein_coding retained_intron MGP_CASTEiJ_T0037413.1 MGP_CASTEiJ_G0020060.1 mouse_genomes_project 13 88126070 88438340 + Edil3 protein_coding retained_intron MGP_CASTEiJ_T0003393.1 MGP_CASTEiJ_G0003101.1 mouse_genomes_project 13 112223333 112230968 - Gm15288 antisense antisense MGP_CASTEiJ_T0037692.1 MGP_CASTEiJ_G0020152.1 mouse_genomes_project 13 100879502 100893958 - MGP_CASTEiJ_P0037692 Mrps36 protein_coding unknown_likely_coding MGP_CASTEiJ_T0037693.1 MGP_CASTEiJ_G0020152.1 mouse_genomes_project 13 100882130 100890153 - MGP_CASTEiJ_P0037693 Mrps36 protein_coding protein_coding MGP_CASTEiJ_T0037694.1 MGP_CASTEiJ_G0020152.1 mouse_genomes_project 13 100882182 100889627 - Mrps36 protein_coding processed_transcript MGP_CASTEiJ_T0037695.1 MGP_CASTEiJ_G0020152.1 mouse_genomes_project 13 100882205 100890084 - Mrps36 protein_coding processed_transcript MGP_CASTEiJ_T0037696.1 MGP_CASTEiJ_G0020152.1 mouse_genomes_project 13 100882233 100889610 - Mrps36 protein_coding processed_transcript MGP_CASTEiJ_T0037697.1 MGP_CASTEiJ_G0020152.1 mouse_genomes_project 13 100888914 100889609 - Mrps36 protein_coding processed_transcript MGP_CASTEiJ_T0012596.1 MGP_CASTEiJ_G0010759.1 mouse_genomes_project 13 113889011 113889270 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037152.1 MGP_CASTEiJ_G0019976.1 mouse_genomes_project 13 66176462 66208497 - MGP_CASTEiJ_P0037152 protein_coding protein_coding MGP_CASTEiJ_T0036499.1 MGP_CASTEiJ_G0019762.1 mouse_genomes_project 13 41357490 41379576 + MGP_CASTEiJ_P0036499 Sirt5 protein_coding protein_coding MGP_CASTEiJ_T0039486.1 MGP_CASTEiJ_G0020693.1 mouse_genomes_project 14 51909937 52020267 + MGP_CASTEiJ_P0039486 Mipep protein_coding protein_coding MGP_CASTEiJ_T0039601.1 MGP_CASTEiJ_G0020743.1 mouse_genomes_project 14 57226777 57241508 + MGP_CASTEiJ_P0039601 Pbk protein_coding protein_coding MGP_CASTEiJ_T0039602.1 MGP_CASTEiJ_G0020743.1 mouse_genomes_project 14 57226877 57235733 + Pbk protein_coding processed_transcript MGP_CASTEiJ_T0039603.1 MGP_CASTEiJ_G0020743.1 mouse_genomes_project 14 57227165 57236499 + MGP_CASTEiJ_P0039603 Pbk protein_coding protein_coding MGP_CASTEiJ_T0040071.1 MGP_CASTEiJ_G0020905.1 mouse_genomes_project 14 112488451 112527802 - MGP_CASTEiJ_P0040071 Dct protein_coding protein_coding MGP_CASTEiJ_T0100608.1 MGP_CASTEiJ_G0037521.1 mouse_genomes_project 14 29899924 29900049 + Gm24394 snoRNA snoRNA MGP_CASTEiJ_T0038699.1 MGP_CASTEiJ_G0020447.1 mouse_genomes_project 14 30421032 30441445 - MGP_CASTEiJ_P0038699 Cdhr1 protein_coding protein_coding MGP_CASTEiJ_T0012617.1 MGP_CASTEiJ_G0010780.1 mouse_genomes_project 14 25349432 25350588 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039498.1 MGP_CASTEiJ_G0020697.1 mouse_genomes_project 14 52447801 52450052 + MGP_CASTEiJ_P0039498 Arl11 protein_coding protein_coding MGP_CASTEiJ_T0099375.1 MGP_CASTEiJ_G0036288.1 mouse_genomes_project 14 26806565 26806672 + Gm26228 snRNA snRNA MGP_CASTEiJ_T0039475.1 MGP_CASTEiJ_G0020690.1 mouse_genomes_project 14 51485331 51488043 + MGP_CASTEiJ_P0039475 Amer2 protein_coding protein_coding MGP_CASTEiJ_T0003437.1 MGP_CASTEiJ_G0003133.1 mouse_genomes_project 14 45759798 45780077 + Gm20687 antisense antisense MGP_CASTEiJ_T0003451.1 MGP_CASTEiJ_G0003143.1 mouse_genomes_project 14 55425936 55430884 - 4930471C04Rik antisense antisense MGP_CASTEiJ_T0039633.1 MGP_CASTEiJ_G0020753.1 mouse_genomes_project 14 57751048 57765483 + MGP_CASTEiJ_P0039633 Trim35 protein_coding protein_coding MGP_CASTEiJ_T0039634.1 MGP_CASTEiJ_G0020753.1 mouse_genomes_project 14 57751107 57762350 + MGP_CASTEiJ_P0039634 Trim35 protein_coding protein_coding MGP_CASTEiJ_T0038079.1 MGP_CASTEiJ_G0020280.1 mouse_genomes_project 14 10839595 10890739 - MGP_CASTEiJ_P0038079 Ube2e1 protein_coding protein_coding MGP_CASTEiJ_T0038080.1 MGP_CASTEiJ_G0020280.1 mouse_genomes_project 14 10841846 10889914 - Ube2e1 protein_coding retained_intron MGP_CASTEiJ_T0038081.1 MGP_CASTEiJ_G0020280.1 mouse_genomes_project 14 10842146 10886236 - Ube2e1 protein_coding processed_transcript MGP_CASTEiJ_T0038082.1 MGP_CASTEiJ_G0020280.1 mouse_genomes_project 14 10882207 10889977 - Ube2e1 protein_coding retained_intron MGP_CASTEiJ_T0038930.1 MGP_CASTEiJ_G0020534.1 mouse_genomes_project 14 42241073 42251873 + MGP_CASTEiJ_P0038930 Ang protein_coding protein_coding MGP_CASTEiJ_T0038932.1 MGP_CASTEiJ_G0020534.1 mouse_genomes_project 14 42245911 42251873 + MGP_CASTEiJ_P0038932 Ang protein_coding protein_coding MGP_CASTEiJ_T0038722.1 MGP_CASTEiJ_G0020457.1 mouse_genomes_project 14 34513513 34516206 + MGP_CASTEiJ_P0038722 Sftpa1 protein_coding protein_coding MGP_CASTEiJ_T0038723.1 MGP_CASTEiJ_G0020457.1 mouse_genomes_project 14 34513519 34518182 + MGP_CASTEiJ_P0038723 Sftpa1 protein_coding protein_coding MGP_CASTEiJ_T0003443.1 MGP_CASTEiJ_G0003137.1 mouse_genomes_project 14 47688987 47692535 + 2410022M11Rik antisense antisense MGP_CASTEiJ_T0038869.1 MGP_CASTEiJ_G0020497.1 mouse_genomes_project 14 41207217 41208285 + MGP_CASTEiJ_P0038869 protein_coding protein_coding MGP_CASTEiJ_T0039071.1 MGP_CASTEiJ_G0020564.1 mouse_genomes_project 14 43733369 43740239 - MGP_CASTEiJ_P0039071 Olfr1507 protein_coding protein_coding MGP_CASTEiJ_T0039072.1 MGP_CASTEiJ_G0020564.1 mouse_genomes_project 14 43733369 43734481 - MGP_CASTEiJ_P0039072 Olfr1507 protein_coding protein_coding MGP_CASTEiJ_T0039073.1 MGP_CASTEiJ_G0020564.1 mouse_genomes_project 14 43733912 43739841 - MGP_CASTEiJ_P0039073 Olfr1507 protein_coding protein_coding MGP_CASTEiJ_T0039074.1 MGP_CASTEiJ_G0020564.1 mouse_genomes_project 14 43733924 43740235 - MGP_CASTEiJ_P0039074 Olfr1507 protein_coding protein_coding MGP_CASTEiJ_T0039075.1 MGP_CASTEiJ_G0020564.1 mouse_genomes_project 14 43733933 43739869 - MGP_CASTEiJ_P0039075 Olfr1507 protein_coding protein_coding MGP_CASTEiJ_T0039076.1 MGP_CASTEiJ_G0020564.1 mouse_genomes_project 14 43734329 43740233 - MGP_CASTEiJ_P0039076 Olfr1507 protein_coding protein_coding MGP_CASTEiJ_T0038511.1 MGP_CASTEiJ_G0020386.1 mouse_genomes_project 14 24274267 24337098 - MGP_CASTEiJ_P0038511 Dnah1 protein_coding protein_coding MGP_CASTEiJ_T0006560.1 MGP_CASTEiJ_G0005434.1 mouse_genomes_project 14 114353843 114356184 + 1700006F04Rik lincRNA lincRNA MGP_CASTEiJ_T0002428.1 MGP_CASTEiJ_G0002343.1 mouse_genomes_project 14 44776079 44776138 + MGP_CASTEiJ_P0002428 Trdj2 TR_J_gene TR_J_gene MGP_CASTEiJ_T0039390.1 MGP_CASTEiJ_G0020665.1 mouse_genomes_project 14 48034484 48044793 - MGP_CASTEiJ_P0039390 Gjb6 protein_coding protein_coding MGP_CASTEiJ_T0039391.1 MGP_CASTEiJ_G0020665.1 mouse_genomes_project 14 48035464 48044463 - MGP_CASTEiJ_P0039391 Gjb6 protein_coding protein_coding MGP_CASTEiJ_T0039392.1 MGP_CASTEiJ_G0020665.1 mouse_genomes_project 14 48042026 48043249 - Gjb6 protein_coding processed_transcript MGP_CASTEiJ_T0002580.1 MGP_CASTEiJ_G0002478.1 mouse_genomes_project 14 44492790 44493384 + MGP_CASTEiJ_P0002580 Trav19 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039090.1 MGP_CASTEiJ_G0020569.1 mouse_genomes_project 14 45018483 45068897 - MGP_CASTEiJ_P0039090 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039091.1 MGP_CASTEiJ_G0020569.1 mouse_genomes_project 14 45022437 45033993 - protein_coding processed_transcript MGP_CASTEiJ_T0039092.1 MGP_CASTEiJ_G0020569.1 mouse_genomes_project 14 45022886 45049419 - protein_coding processed_transcript MGP_CASTEiJ_T0039093.1 MGP_CASTEiJ_G0020569.1 mouse_genomes_project 14 45027658 45062047 - MGP_CASTEiJ_P0039093 protein_coding protein_coding MGP_CASTEiJ_T0039094.1 MGP_CASTEiJ_G0020569.1 mouse_genomes_project 14 45060284 45063636 - MGP_CASTEiJ_P0039094 protein_coding protein_coding MGP_CASTEiJ_T0039095.1 MGP_CASTEiJ_G0020569.1 mouse_genomes_project 14 45060421 45069091 - MGP_CASTEiJ_P0039095 protein_coding protein_coding MGP_CASTEiJ_T0099385.1 MGP_CASTEiJ_G0036298.1 mouse_genomes_project 14 41847412 41847519 + Gm24316 snRNA snRNA MGP_CASTEiJ_T0038240.1 MGP_CASTEiJ_G0020321.1 mouse_genomes_project 14 17005281 17017547 - MGP_CASTEiJ_P0038240 Dlg5 protein_coding protein_coding MGP_CASTEiJ_T0038241.1 MGP_CASTEiJ_G0020321.1 mouse_genomes_project 14 17005281 17052606 - MGP_CASTEiJ_P0038241 Dlg5 protein_coding protein_coding MGP_CASTEiJ_T0038242.1 MGP_CASTEiJ_G0020321.1 mouse_genomes_project 14 17005281 17127367 - MGP_CASTEiJ_P0038242 Dlg5 protein_coding protein_coding MGP_CASTEiJ_T0038243.1 MGP_CASTEiJ_G0020321.1 mouse_genomes_project 14 17005283 17127367 - MGP_CASTEiJ_P0038243 Dlg5 protein_coding protein_coding MGP_CASTEiJ_T0038244.1 MGP_CASTEiJ_G0020321.1 mouse_genomes_project 14 17015735 17023632 - MGP_CASTEiJ_P0038244 Dlg5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038245.1 MGP_CASTEiJ_G0020321.1 mouse_genomes_project 14 17017639 17020123 - Dlg5 protein_coding retained_intron MGP_CASTEiJ_T0038246.1 MGP_CASTEiJ_G0020321.1 mouse_genomes_project 14 17027481 17030529 - Dlg5 protein_coding retained_intron MGP_CASTEiJ_T0038247.1 MGP_CASTEiJ_G0020321.1 mouse_genomes_project 14 17065946 17126313 - MGP_CASTEiJ_P0038247 Dlg5 protein_coding protein_coding MGP_CASTEiJ_T0012635.1 MGP_CASTEiJ_G0010798.1 mouse_genomes_project 14 44974830 44975522 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002472.1 MGP_CASTEiJ_G0002383.1 mouse_genomes_project 14 44845300 44845361 + MGP_CASTEiJ_P0002472 Traj16 TR_J_gene TR_J_gene MGP_CASTEiJ_T0006528.1 MGP_CASTEiJ_G0005409.1 mouse_genomes_project 14 48505160 48506104 + 1700039M10Rik lincRNA lincRNA MGP_CASTEiJ_T0002526.1 MGP_CASTEiJ_G0002430.1 mouse_genomes_project 14 43895345 43895870 + MGP_CASTEiJ_P0002526 Trav4-2 TR_V_gene TR_V_gene MGP_CASTEiJ_T0038802.1 MGP_CASTEiJ_G0020484.1 mouse_genomes_project 14 38516391 38548277 - MGP_CASTEiJ_P0038802 Atg14 protein_coding protein_coding MGP_CASTEiJ_T0038254.1 MGP_CASTEiJ_G0020323.1 mouse_genomes_project 14 17352511 17391618 - MGP_CASTEiJ_P0038254 Polr3a protein_coding protein_coding MGP_CASTEiJ_T0038255.1 MGP_CASTEiJ_G0020323.1 mouse_genomes_project 14 17352774 17397139 - MGP_CASTEiJ_P0038255 Polr3a protein_coding unknown_likely_coding MGP_CASTEiJ_T0039978.1 MGP_CASTEiJ_G0020874.1 mouse_genomes_project 14 92176098 92204344 + MGP_CASTEiJ_P0039978 Bora protein_coding protein_coding MGP_CASTEiJ_T0039848.1 MGP_CASTEiJ_G0020826.1 mouse_genomes_project 14 66808164 66878885 + MGP_CASTEiJ_P0039848 Lcp1 protein_coding protein_coding MGP_CASTEiJ_T0039849.1 MGP_CASTEiJ_G0020826.1 mouse_genomes_project 14 66808222 66824935 + Lcp1 protein_coding processed_transcript MGP_CASTEiJ_T0039850.1 MGP_CASTEiJ_G0020826.1 mouse_genomes_project 14 66808222 66879887 + MGP_CASTEiJ_P0039850 Lcp1 protein_coding protein_coding MGP_CASTEiJ_T0039851.1 MGP_CASTEiJ_G0020826.1 mouse_genomes_project 14 66808562 66879836 + MGP_CASTEiJ_P0039851 Lcp1 protein_coding protein_coding MGP_CASTEiJ_T0039852.1 MGP_CASTEiJ_G0020826.1 mouse_genomes_project 14 66808617 66910035 + MGP_CASTEiJ_P0039852 Lcp1 protein_coding protein_coding MGP_CASTEiJ_T0039853.1 MGP_CASTEiJ_G0020826.1 mouse_genomes_project 14 66813408 66911076 + MGP_CASTEiJ_P0039853 Lcp1 protein_coding protein_coding MGP_CASTEiJ_T0039854.1 MGP_CASTEiJ_G0020826.1 mouse_genomes_project 14 66813551 66879827 + MGP_CASTEiJ_P0039854 Lcp1 protein_coding protein_coding MGP_CASTEiJ_T0039855.1 MGP_CASTEiJ_G0020826.1 mouse_genomes_project 14 66852431 66855550 + Lcp1 protein_coding retained_intron MGP_CASTEiJ_T0039856.1 MGP_CASTEiJ_G0020826.1 mouse_genomes_project 14 66853692 66876901 + Lcp1 protein_coding processed_transcript MGP_CASTEiJ_T0039857.1 MGP_CASTEiJ_G0020826.1 mouse_genomes_project 14 66868028 66911050 + MGP_CASTEiJ_P0039857 Lcp1 protein_coding protein_coding MGP_CASTEiJ_T0039858.1 MGP_CASTEiJ_G0020826.1 mouse_genomes_project 14 66876658 66878807 + Lcp1 protein_coding processed_transcript MGP_CASTEiJ_T0039452.1 MGP_CASTEiJ_G0020682.1 mouse_genomes_project 14 50497587 50545657 - MGP_CASTEiJ_P0039452 Setdb2 protein_coding protein_coding MGP_CASTEiJ_T0039453.1 MGP_CASTEiJ_G0020682.1 mouse_genomes_project 14 50497589 50545650 - MGP_CASTEiJ_P0039453 Setdb2 protein_coding protein_coding MGP_CASTEiJ_T0039454.1 MGP_CASTEiJ_G0020682.1 mouse_genomes_project 14 50497847 50511213 - Setdb2 protein_coding retained_intron MGP_CASTEiJ_T0039455.1 MGP_CASTEiJ_G0020682.1 mouse_genomes_project 14 50526975 50545648 - MGP_CASTEiJ_P0039455 Setdb2 protein_coding protein_coding MGP_CASTEiJ_T0039456.1 MGP_CASTEiJ_G0020682.1 mouse_genomes_project 14 50535890 50545646 - Setdb2 protein_coding processed_transcript MGP_CASTEiJ_T0012675.1 MGP_CASTEiJ_G0010838.1 mouse_genomes_project 14 117250186 117255073 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0038540.1 MGP_CASTEiJ_G0020393.1 mouse_genomes_project 14 24688142 24716158 + Btd protein_coding processed_transcript MGP_CASTEiJ_T0038541.1 MGP_CASTEiJ_G0020393.1 mouse_genomes_project 14 24688171 24717566 + MGP_CASTEiJ_P0038541 Btd protein_coding protein_coding MGP_CASTEiJ_T0012614.1 MGP_CASTEiJ_G0010777.1 mouse_genomes_project 14 19263336 19264138 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039156.1 MGP_CASTEiJ_G0020586.1 mouse_genomes_project 14 45399863 45462144 - MGP_CASTEiJ_P0039156 Slc7a8 protein_coding protein_coding MGP_CASTEiJ_T0039385.1 MGP_CASTEiJ_G0020660.1 mouse_genomes_project 14 47655859 47681073 - MGP_CASTEiJ_P0039385 Zmym5 protein_coding protein_coding MGP_CASTEiJ_T0098339.1 MGP_CASTEiJ_G0035270.1 mouse_genomes_project 14 13750037 13762545 - pseudogene pseudogene MGP_CASTEiJ_T0038069.1 MGP_CASTEiJ_G0020277.1 mouse_genomes_project 14 10768006 10796458 - MGP_CASTEiJ_P0038069 Nr1d2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038070.1 MGP_CASTEiJ_G0020277.1 mouse_genomes_project 14 10777516 10796663 - Nr1d2 protein_coding retained_intron MGP_CASTEiJ_T0039538.1 MGP_CASTEiJ_G0020716.1 mouse_genomes_project 14 54420428 54452459 - MGP_CASTEiJ_P0039538 Fdft1 protein_coding protein_coding MGP_CASTEiJ_T0040017.1 MGP_CASTEiJ_G0020886.1 mouse_genomes_project 14 96361145 96371743 + MGP_CASTEiJ_P0040017 Acod1 protein_coding protein_coding MGP_CASTEiJ_T0002581.1 MGP_CASTEiJ_G0002479.1 mouse_genomes_project 14 44524484 44525254 + MGP_CASTEiJ_P0002581 Trav21-dv12 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002474.1 MGP_CASTEiJ_G0002385.1 mouse_genomes_project 14 44847907 44847964 + MGP_CASTEiJ_P0002474 Traj13 TR_J_gene TR_J_gene MGP_CASTEiJ_T0006484.1 MGP_CASTEiJ_G0005379.1 mouse_genomes_project 14 17522844 17533223 - lincRNA lincRNA MGP_CASTEiJ_T0006485.1 MGP_CASTEiJ_G0005379.1 mouse_genomes_project 14 17531070 17533216 - lincRNA lincRNA MGP_CASTEiJ_T0100628.1 MGP_CASTEiJ_G0037541.1 mouse_genomes_project 14 67707396 67707530 - Gm25517 snoRNA snoRNA MGP_CASTEiJ_T0038260.1 MGP_CASTEiJ_G0020325.1 mouse_genomes_project 14 18369521 18448490 + Zmiz1 protein_coding retained_intron MGP_CASTEiJ_T0038261.1 MGP_CASTEiJ_G0020325.1 mouse_genomes_project 14 18369560 18577153 + MGP_CASTEiJ_P0038261 Zmiz1 protein_coding protein_coding MGP_CASTEiJ_T0038262.1 MGP_CASTEiJ_G0020325.1 mouse_genomes_project 14 18369603 18575128 + MGP_CASTEiJ_P0038262 Zmiz1 protein_coding protein_coding MGP_CASTEiJ_T0038263.1 MGP_CASTEiJ_G0020325.1 mouse_genomes_project 14 18369628 18558144 + Zmiz1 protein_coding retained_intron MGP_CASTEiJ_T0038264.1 MGP_CASTEiJ_G0020325.1 mouse_genomes_project 14 18369891 18479536 + Zmiz1 protein_coding processed_transcript MGP_CASTEiJ_T0038265.1 MGP_CASTEiJ_G0020325.1 mouse_genomes_project 14 18515958 18552198 + Zmiz1 protein_coding processed_transcript MGP_CASTEiJ_T0038266.1 MGP_CASTEiJ_G0020325.1 mouse_genomes_project 14 18516439 18554313 + MGP_CASTEiJ_P0038266 Zmiz1 protein_coding protein_coding MGP_CASTEiJ_T0038267.1 MGP_CASTEiJ_G0020325.1 mouse_genomes_project 14 18565370 18566939 + Zmiz1 protein_coding retained_intron MGP_CASTEiJ_T0098510.1 MGP_CASTEiJ_G0035441.1 mouse_genomes_project 14 70232027 70232142 - Gm26197 rRNA rRNA MGP_CASTEiJ_T0039844.1 MGP_CASTEiJ_G0020823.1 mouse_genomes_project 14 66411700 66605247 - MGP_CASTEiJ_P0039844 Lrch1 protein_coding protein_coding MGP_CASTEiJ_T0039845.1 MGP_CASTEiJ_G0020823.1 mouse_genomes_project 14 66420305 66605030 - MGP_CASTEiJ_P0039845 Lrch1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039154.1 MGP_CASTEiJ_G0020584.1 mouse_genomes_project 14 45363215 45367805 + MGP_CASTEiJ_P0039154 1700123O20Rik protein_coding protein_coding MGP_CASTEiJ_T0016634.1 MGP_CASTEiJ_G0014580.1 mouse_genomes_project 14 14613506 14616985 + A430057M04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016635.1 MGP_CASTEiJ_G0014580.1 mouse_genomes_project 14 14614397 14622978 + A430057M04Rik processed_transcript processed_transcript MGP_CASTEiJ_T0012666.1 MGP_CASTEiJ_G0010829.1 mouse_genomes_project 14 92116700 92117021 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006536.1 MGP_CASTEiJ_G0005416.1 mouse_genomes_project 14 53998161 54070544 + 4931440J10Rik lincRNA lincRNA MGP_CASTEiJ_T0038542.1 MGP_CASTEiJ_G0020394.1 mouse_genomes_project 14 24750114 24890182 - MGP_CASTEiJ_P0038542 Ankrd28 protein_coding protein_coding MGP_CASTEiJ_T0038543.1 MGP_CASTEiJ_G0020394.1 mouse_genomes_project 14 24752124 24838134 - MGP_CASTEiJ_P0038543 Ankrd28 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039374.1 MGP_CASTEiJ_G0020657.1 mouse_genomes_project 14 47426272 47513148 + MGP_CASTEiJ_P0039374 Parp4 protein_coding protein_coding MGP_CASTEiJ_T0039375.1 MGP_CASTEiJ_G0020657.1 mouse_genomes_project 14 47508640 47513146 + Parp4 protein_coding retained_intron MGP_CASTEiJ_T0003427.1 MGP_CASTEiJ_G0003125.1 mouse_genomes_project 14 37285363 37287138 + Gm15222 antisense antisense MGP_CASTEiJ_T0040132.1 MGP_CASTEiJ_G0020932.1 mouse_genomes_project 14 117285574 117287122 + MGP_CASTEiJ_P0040132 Gm10837 protein_coding protein_coding MGP_CASTEiJ_T0039261.1 MGP_CASTEiJ_G0020614.1 mouse_genomes_project 14 46325243 46328664 - MGP_CASTEiJ_P0039261 Emc9 protein_coding protein_coding MGP_CASTEiJ_T0039262.1 MGP_CASTEiJ_G0020614.1 mouse_genomes_project 14 46325248 46326152 - Emc9 protein_coding retained_intron MGP_CASTEiJ_T0039263.1 MGP_CASTEiJ_G0020614.1 mouse_genomes_project 14 46325249 46329018 - MGP_CASTEiJ_P0039263 Emc9 protein_coding protein_coding MGP_CASTEiJ_T0039264.1 MGP_CASTEiJ_G0020614.1 mouse_genomes_project 14 46327093 46328929 - Emc9 protein_coding retained_intron MGP_CASTEiJ_T0098714.1 MGP_CASTEiJ_G0035645.1 mouse_genomes_project 14 41939777 41940014 - Rprl2 ribozyme ribozyme MGP_CASTEiJ_T0038995.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43333106 43389239 + MGP_CASTEiJ_P0038995 Rpgrip1 protein_coding protein_coding MGP_CASTEiJ_T0038996.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43333305 43388375 + MGP_CASTEiJ_P0038996 Rpgrip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038997.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43333324 43344805 + Rpgrip1 protein_coding retained_intron MGP_CASTEiJ_T0038998.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43333331 43387347 + Rpgrip1 protein_coding retained_intron MGP_CASTEiJ_T0038999.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43333341 43389272 + MGP_CASTEiJ_P0038999 Rpgrip1 protein_coding protein_coding MGP_CASTEiJ_T0039000.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43334557 43388150 + MGP_CASTEiJ_P0039000 Rpgrip1 protein_coding protein_coding MGP_CASTEiJ_T0039001.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43337180 43358489 + Rpgrip1 protein_coding retained_intron MGP_CASTEiJ_T0039002.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43342874 43343456 + Rpgrip1 protein_coding retained_intron MGP_CASTEiJ_T0039003.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43345027 43364178 + MGP_CASTEiJ_P0039003 Rpgrip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039004.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43360152 43375885 + Rpgrip1 protein_coding retained_intron MGP_CASTEiJ_T0039005.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43360197 43389271 + Rpgrip1 protein_coding retained_intron MGP_CASTEiJ_T0039006.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43372108 43375787 + MGP_CASTEiJ_P0039006 Rpgrip1 protein_coding protein_coding MGP_CASTEiJ_T0039007.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43372168 43377030 + MGP_CASTEiJ_P0039007 Rpgrip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039008.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43373744 43375983 + Rpgrip1 protein_coding retained_intron MGP_CASTEiJ_T0039009.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43376007 43388228 + MGP_CASTEiJ_P0039009 Rpgrip1 protein_coding protein_coding MGP_CASTEiJ_T0039010.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43376111 43377250 + Rpgrip1 protein_coding retained_intron MGP_CASTEiJ_T0039011.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43376976 43388072 + MGP_CASTEiJ_P0039011 Rpgrip1 protein_coding protein_coding MGP_CASTEiJ_T0039012.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43378593 43382818 + Rpgrip1 protein_coding retained_intron MGP_CASTEiJ_T0039013.1 MGP_CASTEiJ_G0020551.1 mouse_genomes_project 14 43386411 43391491 + MGP_CASTEiJ_P0039013 Rpgrip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006482.1 MGP_CASTEiJ_G0005377.1 mouse_genomes_project 14 13373577 13389216 - 6230400D17Rik lincRNA lincRNA MGP_CASTEiJ_T0012663.1 MGP_CASTEiJ_G0010826.1 mouse_genomes_project 14 89212962 89213820 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040160.1 MGP_CASTEiJ_G0020936.1 mouse_genomes_project 14 118065873 118416326 - MGP_CASTEiJ_P0040160 Nalcn protein_coding protein_coding MGP_CASTEiJ_T0039555.1 MGP_CASTEiJ_G0020723.1 mouse_genomes_project 14 54918034 55128252 + MGP_CASTEiJ_P0039555 Xkr6 protein_coding protein_coding MGP_CASTEiJ_T0039556.1 MGP_CASTEiJ_G0020723.1 mouse_genomes_project 14 54918206 54970812 + MGP_CASTEiJ_P0039556 Xkr6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039557.1 MGP_CASTEiJ_G0020723.1 mouse_genomes_project 14 54918557 54967394 + MGP_CASTEiJ_P0039557 Xkr6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039558.1 MGP_CASTEiJ_G0020723.1 mouse_genomes_project 14 54963750 54967682 + Xkr6 protein_coding processed_transcript MGP_CASTEiJ_T0039559.1 MGP_CASTEiJ_G0020723.1 mouse_genomes_project 14 55099443 55127453 + MGP_CASTEiJ_P0039559 Xkr6 protein_coding protein_coding MGP_CASTEiJ_T0039953.1 MGP_CASTEiJ_G0020866.1 mouse_genomes_project 14 79093643 79605030 - MGP_CASTEiJ_P0039953 Diaph3 protein_coding protein_coding MGP_CASTEiJ_T0039954.1 MGP_CASTEiJ_G0020866.1 mouse_genomes_project 14 79094576 79604920 - MGP_CASTEiJ_P0039954 Diaph3 protein_coding protein_coding MGP_CASTEiJ_T0038759.1 MGP_CASTEiJ_G0020471.1 mouse_genomes_project 14 37280998 37288520 - MGP_CASTEiJ_P0038759 Bmp4 protein_coding protein_coding MGP_CASTEiJ_T0038760.1 MGP_CASTEiJ_G0020471.1 mouse_genomes_project 14 37281185 37288401 - MGP_CASTEiJ_P0038760 Bmp4 protein_coding protein_coding MGP_CASTEiJ_T0038761.1 MGP_CASTEiJ_G0020471.1 mouse_genomes_project 14 37284840 37288386 - Bmp4 protein_coding retained_intron MGP_CASTEiJ_T0039473.1 MGP_CASTEiJ_G0020689.1 mouse_genomes_project 14 51374154 51422929 + MGP_CASTEiJ_P0039473 Mtmr6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039474.1 MGP_CASTEiJ_G0020689.1 mouse_genomes_project 14 51386868 51426227 + MGP_CASTEiJ_P0039474 Mtmr6 protein_coding protein_coding MGP_CASTEiJ_T0003408.1 MGP_CASTEiJ_G0003109.1 mouse_genomes_project 14 13324722 13327768 + 2810402E24Rik antisense antisense MGP_CASTEiJ_T0009718.1 MGP_CASTEiJ_G0007906.1 mouse_genomes_project 14 28111985 28112083 + Mir346 miRNA miRNA MGP_CASTEiJ_T0039127.1 MGP_CASTEiJ_G0020582.1 mouse_genomes_project 14 45313742 45321055 + MGP_CASTEiJ_P0039127 Gm17606 protein_coding protein_coding MGP_CASTEiJ_T0002543.1 MGP_CASTEiJ_G0002446.1 mouse_genomes_project 14 44121605 44122157 + MGP_CASTEiJ_P0002543 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039573.1 MGP_CASTEiJ_G0020731.1 mouse_genomes_project 14 55449470 55800866 - MGP_CASTEiJ_P0039573 Msra protein_coding protein_coding MGP_CASTEiJ_T0012639.1 MGP_CASTEiJ_G0010802.1 mouse_genomes_project 14 47658322 47681043 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099403.1 MGP_CASTEiJ_G0036316.1 mouse_genomes_project 14 91051126 91051290 - Gm25831 snRNA snRNA MGP_CASTEiJ_T0006534.1 MGP_CASTEiJ_G0005415.1 mouse_genomes_project 14 53677441 53680776 - lincRNA lincRNA MGP_CASTEiJ_T0006535.1 MGP_CASTEiJ_G0005415.1 mouse_genomes_project 14 53678858 53694684 - lincRNA lincRNA MGP_CASTEiJ_T0039545.1 MGP_CASTEiJ_G0020719.1 mouse_genomes_project 14 54656495 54706345 - MGP_CASTEiJ_P0039545 Blk protein_coding protein_coding MGP_CASTEiJ_T0102075.1 MGP_CASTEiJ_G0038800.1 mouse_genomes_project 14 18822012 18830042 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0039527.1 MGP_CASTEiJ_G0020712.1 mouse_genomes_project 14 54274918 54282806 + MGP_CASTEiJ_P0039527 Defb43 protein_coding protein_coding MGP_CASTEiJ_T0099376.1 MGP_CASTEiJ_G0036289.1 mouse_genomes_project 14 30079550 30079656 + Gm25204 snRNA snRNA MGP_CASTEiJ_T0038422.1 MGP_CASTEiJ_G0020371.1 mouse_genomes_project 14 23894077 23911890 - MGP_CASTEiJ_P0038422 Itih3 protein_coding protein_coding MGP_CASTEiJ_T0038423.1 MGP_CASTEiJ_G0020371.1 mouse_genomes_project 14 23894080 23911717 - Itih3 protein_coding retained_intron MGP_CASTEiJ_T0038424.1 MGP_CASTEiJ_G0020371.1 mouse_genomes_project 14 23894187 23911679 - MGP_CASTEiJ_P0038424 Itih3 protein_coding protein_coding MGP_CASTEiJ_T0038425.1 MGP_CASTEiJ_G0020371.1 mouse_genomes_project 14 23894187 23911679 - MGP_CASTEiJ_P0038425 Itih3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038426.1 MGP_CASTEiJ_G0020371.1 mouse_genomes_project 14 23895354 23900909 - MGP_CASTEiJ_P0038426 Itih3 protein_coding protein_coding MGP_CASTEiJ_T0038427.1 MGP_CASTEiJ_G0020371.1 mouse_genomes_project 14 23897483 23899651 - Itih3 protein_coding retained_intron MGP_CASTEiJ_T0012662.1 MGP_CASTEiJ_G0010825.1 mouse_genomes_project 14 82570450 82571425 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039666.1 MGP_CASTEiJ_G0020763.1 mouse_genomes_project 14 59225327 59265698 - MGP_CASTEiJ_P0039666 Cdca2 protein_coding protein_coding MGP_CASTEiJ_T0039667.1 MGP_CASTEiJ_G0020763.1 mouse_genomes_project 14 59225351 59265467 - MGP_CASTEiJ_P0039667 Cdca2 protein_coding protein_coding MGP_CASTEiJ_T0039668.1 MGP_CASTEiJ_G0020763.1 mouse_genomes_project 14 59226792 59245753 - MGP_CASTEiJ_P0039668 Cdca2 protein_coding protein_coding MGP_CASTEiJ_T0039669.1 MGP_CASTEiJ_G0020763.1 mouse_genomes_project 14 59229304 59265467 - MGP_CASTEiJ_P0039669 Cdca2 protein_coding protein_coding MGP_CASTEiJ_T0039670.1 MGP_CASTEiJ_G0020763.1 mouse_genomes_project 14 59243152 59246994 - MGP_CASTEiJ_P0039670 Cdca2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039671.1 MGP_CASTEiJ_G0020763.1 mouse_genomes_project 14 59247936 59265232 - Cdca2 protein_coding retained_intron MGP_CASTEiJ_T0039672.1 MGP_CASTEiJ_G0020763.1 mouse_genomes_project 14 59249272 59265538 - MGP_CASTEiJ_P0039672 Cdca2 protein_coding protein_coding MGP_CASTEiJ_T0039186.1 MGP_CASTEiJ_G0020597.1 mouse_genomes_project 14 45668594 45696632 - MGP_CASTEiJ_P0039186 protein_coding protein_coding MGP_CASTEiJ_T0039187.1 MGP_CASTEiJ_G0020597.1 mouse_genomes_project 14 45668673 45696624 - MGP_CASTEiJ_P0039187 protein_coding protein_coding MGP_CASTEiJ_T0039188.1 MGP_CASTEiJ_G0020597.1 mouse_genomes_project 14 45672865 45696332 - MGP_CASTEiJ_P0039188 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039190.1 MGP_CASTEiJ_G0020597.1 mouse_genomes_project 14 45694689 45696546 - MGP_CASTEiJ_P0039190 protein_coding protein_coding MGP_CASTEiJ_T0038674.1 MGP_CASTEiJ_G0020439.1 mouse_genomes_project 14 27895377 27971790 + MGP_CASTEiJ_P0038674 Wapl protein_coding protein_coding MGP_CASTEiJ_T0038675.1 MGP_CASTEiJ_G0020439.1 mouse_genomes_project 14 27895413 27966093 + MGP_CASTEiJ_P0038675 Wapl protein_coding protein_coding MGP_CASTEiJ_T0038676.1 MGP_CASTEiJ_G0020439.1 mouse_genomes_project 14 27895571 27966188 + MGP_CASTEiJ_P0038676 Wapl protein_coding protein_coding MGP_CASTEiJ_T0038677.1 MGP_CASTEiJ_G0020439.1 mouse_genomes_project 14 27895749 27971794 + MGP_CASTEiJ_P0038677 Wapl protein_coding unknown_likely_coding MGP_CASTEiJ_T0038678.1 MGP_CASTEiJ_G0020439.1 mouse_genomes_project 14 27918058 27967910 + Wapl protein_coding processed_transcript MGP_CASTEiJ_T0038679.1 MGP_CASTEiJ_G0020439.1 mouse_genomes_project 14 27957110 27961393 + MGP_CASTEiJ_P0038679 Wapl protein_coding protein_coding MGP_CASTEiJ_T0038959.1 MGP_CASTEiJ_G0020543.1 mouse_genomes_project 14 43119001 43127194 - MGP_CASTEiJ_P0038959 Ndrg2 protein_coding protein_coding MGP_CASTEiJ_T0038960.1 MGP_CASTEiJ_G0020543.1 mouse_genomes_project 14 43119872 43127767 - MGP_CASTEiJ_P0038960 Ndrg2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038256.1 MGP_CASTEiJ_G0020324.1 mouse_genomes_project 14 17396922 17403650 + MGP_CASTEiJ_P0038256 Rps24 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038257.1 MGP_CASTEiJ_G0020324.1 mouse_genomes_project 14 17396938 17402449 + MGP_CASTEiJ_P0038257 Rps24 protein_coding protein_coding MGP_CASTEiJ_T0038258.1 MGP_CASTEiJ_G0020324.1 mouse_genomes_project 14 17396938 17403940 + MGP_CASTEiJ_P0038258 Rps24 protein_coding protein_coding MGP_CASTEiJ_T0038259.1 MGP_CASTEiJ_G0020324.1 mouse_genomes_project 14 17398074 17403650 + MGP_CASTEiJ_P0038259 Rps24 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039431.1 MGP_CASTEiJ_G0020677.1 mouse_genomes_project 14 49047417 49090972 + MGP_CASTEiJ_P0039431 Fgf9 protein_coding protein_coding MGP_CASTEiJ_T0039432.1 MGP_CASTEiJ_G0020677.1 mouse_genomes_project 14 49050536 49088971 + MGP_CASTEiJ_P0039432 Fgf9 protein_coding protein_coding MGP_CASTEiJ_T0039433.1 MGP_CASTEiJ_G0020677.1 mouse_genomes_project 14 49052963 49088971 + MGP_CASTEiJ_P0039433 Fgf9 protein_coding protein_coding MGP_CASTEiJ_T0039434.1 MGP_CASTEiJ_G0020677.1 mouse_genomes_project 14 49054358 49088203 + MGP_CASTEiJ_P0039434 Fgf9 protein_coding protein_coding MGP_CASTEiJ_T0099415.1 MGP_CASTEiJ_G0036328.1 mouse_genomes_project 14 109319581 109319686 - Gm24073 snRNA snRNA MGP_CASTEiJ_T0039335.1 MGP_CASTEiJ_G0020630.1 mouse_genomes_project 14 46507118 46511526 - MGP_CASTEiJ_P0039335 Cideb protein_coding protein_coding MGP_CASTEiJ_T0039336.1 MGP_CASTEiJ_G0020630.1 mouse_genomes_project 14 46507726 46511447 - Cideb protein_coding retained_intron MGP_CASTEiJ_T0039400.1 MGP_CASTEiJ_G0020669.1 mouse_genomes_project 14 48483955 48505106 - MGP_CASTEiJ_P0039400 Eef1akmt1 protein_coding protein_coding MGP_CASTEiJ_T0039859.1 MGP_CASTEiJ_G0020827.1 mouse_genomes_project 14 66926024 66970401 + MGP_CASTEiJ_P0039859 Cpb2 protein_coding protein_coding MGP_CASTEiJ_T0038324.1 MGP_CASTEiJ_G0020341.1 mouse_genomes_project 14 19212491 19212848 + MGP_CASTEiJ_P0038324 Gm2178 protein_coding protein_coding MGP_CASTEiJ_T0038154.1 MGP_CASTEiJ_G0020305.1 mouse_genomes_project 14 13393630 13409659 + MGP_CASTEiJ_P0038154 Zswim8 protein_coding protein_coding MGP_CASTEiJ_T0009729.1 MGP_CASTEiJ_G0007917.1 mouse_genomes_project 14 51347969 51348079 - Mir719 miRNA miRNA MGP_CASTEiJ_T0038788.1 MGP_CASTEiJ_G0020481.1 mouse_genomes_project 14 38328385 38341502 + MGP_CASTEiJ_P0038788 Lgals3 protein_coding protein_coding MGP_CASTEiJ_T0038789.1 MGP_CASTEiJ_G0020481.1 mouse_genomes_project 14 38334898 38347239 + MGP_CASTEiJ_P0038789 Lgals3 protein_coding protein_coding MGP_CASTEiJ_T0038790.1 MGP_CASTEiJ_G0020481.1 mouse_genomes_project 14 38334984 38346879 + MGP_CASTEiJ_P0038790 Lgals3 protein_coding protein_coding MGP_CASTEiJ_T0038791.1 MGP_CASTEiJ_G0020481.1 mouse_genomes_project 14 38335001 38341401 + MGP_CASTEiJ_P0038791 Lgals3 protein_coding protein_coding MGP_CASTEiJ_T0038792.1 MGP_CASTEiJ_G0020481.1 mouse_genomes_project 14 38335059 38346874 + MGP_CASTEiJ_P0038792 Lgals3 protein_coding protein_coding MGP_CASTEiJ_T0040056.1 MGP_CASTEiJ_G0020897.1 mouse_genomes_project 14 99335433 99340194 - MGP_CASTEiJ_P0040056 Spry2 protein_coding protein_coding MGP_CASTEiJ_T0006553.1 MGP_CASTEiJ_G0005428.1 mouse_genomes_project 14 99861330 99914994 - 1700128A07Rik lincRNA lincRNA MGP_CASTEiJ_T0006554.1 MGP_CASTEiJ_G0005428.1 mouse_genomes_project 14 99902262 99914966 - 1700128A07Rik lincRNA lincRNA MGP_CASTEiJ_T0000890.1 MGP_CASTEiJ_G0000829.1 mouse_genomes_project 14 97296419 97298135 + TEC TEC MGP_CASTEiJ_T0012670.1 MGP_CASTEiJ_G0010833.1 mouse_genomes_project 14 98695537 98696084 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0038582.1 MGP_CASTEiJ_G0020402.1 mouse_genomes_project 14 25280875 25323847 + Parg protein_coding retained_intron MGP_CASTEiJ_T0038583.1 MGP_CASTEiJ_G0020402.1 mouse_genomes_project 14 25280875 25380449 + MGP_CASTEiJ_P0038583 Parg protein_coding protein_coding MGP_CASTEiJ_T0038584.1 MGP_CASTEiJ_G0020402.1 mouse_genomes_project 14 25280875 25380308 + MGP_CASTEiJ_P0038584 Parg protein_coding protein_coding MGP_CASTEiJ_T0038585.1 MGP_CASTEiJ_G0020402.1 mouse_genomes_project 14 25280875 25378794 + MGP_CASTEiJ_P0038585 Parg protein_coding protein_coding MGP_CASTEiJ_T0038586.1 MGP_CASTEiJ_G0020402.1 mouse_genomes_project 14 25280897 25290135 + MGP_CASTEiJ_P0038586 Parg protein_coding protein_coding MGP_CASTEiJ_T0038587.1 MGP_CASTEiJ_G0020402.1 mouse_genomes_project 14 25280958 25380308 + MGP_CASTEiJ_P0038587 Parg protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038588.1 MGP_CASTEiJ_G0020402.1 mouse_genomes_project 14 25281362 25290086 + Parg protein_coding processed_transcript MGP_CASTEiJ_T0038589.1 MGP_CASTEiJ_G0020402.1 mouse_genomes_project 14 25295298 25323010 + MGP_CASTEiJ_P0038589 Parg protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038590.1 MGP_CASTEiJ_G0020402.1 mouse_genomes_project 14 25322917 25344682 + Parg protein_coding processed_transcript MGP_CASTEiJ_T0038591.1 MGP_CASTEiJ_G0020402.1 mouse_genomes_project 14 25358538 25379429 + Parg protein_coding processed_transcript MGP_CASTEiJ_T0002435.1 MGP_CASTEiJ_G0002348.1 mouse_genomes_project 14 44804275 44804341 + MGP_CASTEiJ_P0002435 Traj53 TR_J_gene TR_J_gene MGP_CASTEiJ_T0012618.1 MGP_CASTEiJ_G0010781.1 mouse_genomes_project 14 26014530 26015540 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0038544.1 MGP_CASTEiJ_G0020395.1 mouse_genomes_project 14 25094243 25134034 + MGP_CASTEiJ_P0038544 Galnt15 protein_coding protein_coding MGP_CASTEiJ_T0038545.1 MGP_CASTEiJ_G0020395.1 mouse_genomes_project 14 25094665 25132064 + MGP_CASTEiJ_P0038545 Galnt15 protein_coding protein_coding MGP_CASTEiJ_T0000891.1 MGP_CASTEiJ_G0000830.1 mouse_genomes_project 14 109160456 109160720 - TEC TEC MGP_CASTEiJ_T0002570.1 MGP_CASTEiJ_G0002470.1 mouse_genomes_project 14 44340171 44340679 + MGP_CASTEiJ_P0002570 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039911.1 MGP_CASTEiJ_G0020847.1 mouse_genomes_project 14 69988069 69996094 - MGP_CASTEiJ_P0039911 Fam216b protein_coding protein_coding MGP_CASTEiJ_T0039912.1 MGP_CASTEiJ_G0020847.1 mouse_genomes_project 14 69988769 69996086 - MGP_CASTEiJ_P0039912 Fam216b protein_coding protein_coding MGP_CASTEiJ_T0039913.1 MGP_CASTEiJ_G0020847.1 mouse_genomes_project 14 69989798 69996068 - MGP_CASTEiJ_P0039913 Fam216b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039920.1 MGP_CASTEiJ_G0020852.1 mouse_genomes_project 14 71147852 71183171 - MGP_CASTEiJ_P0039920 Zfp957 protein_coding protein_coding MGP_CASTEiJ_T0039921.1 MGP_CASTEiJ_G0020852.1 mouse_genomes_project 14 71147854 71159748 - MGP_CASTEiJ_P0039921 Zfp957 protein_coding protein_coding MGP_CASTEiJ_T0039922.1 MGP_CASTEiJ_G0020852.1 mouse_genomes_project 14 71158801 71183244 - Zfp957 protein_coding retained_intron MGP_CASTEiJ_T0002519.1 MGP_CASTEiJ_G0002424.1 mouse_genomes_project 14 43839090 43839607 + MGP_CASTEiJ_P0002519 Trav5-1 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039868.1 MGP_CASTEiJ_G0020832.1 mouse_genomes_project 14 67408269 67462307 - MGP_CASTEiJ_P0039868 Cog3 protein_coding protein_coding MGP_CASTEiJ_T0039950.1 MGP_CASTEiJ_G0020864.1 mouse_genomes_project 14 75762038 75762446 + MGP_CASTEiJ_P0039950 protein_coding protein_coding MGP_CASTEiJ_T0039086.1 MGP_CASTEiJ_G0020567.1 mouse_genomes_project 14 44929920 44930951 - MGP_CASTEiJ_P0039086 Olfr49 protein_coding protein_coding MGP_CASTEiJ_T0098504.1 MGP_CASTEiJ_G0035435.1 mouse_genomes_project 14 30176243 30176359 - n-R5s46 rRNA rRNA MGP_CASTEiJ_T0099371.1 MGP_CASTEiJ_G0036284.1 mouse_genomes_project 14 13387718 13387825 + Gm25328 snRNA snRNA MGP_CASTEiJ_T0006555.1 MGP_CASTEiJ_G0005429.1 mouse_genomes_project 14 109384873 109388735 + Mir17hg lincRNA lincRNA MGP_CASTEiJ_T0012647.1 MGP_CASTEiJ_G0010810.1 mouse_genomes_project 14 51278739 51278977 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039754.1 MGP_CASTEiJ_G0020795.1 mouse_genomes_project 14 61852468 61915294 - MGP_CASTEiJ_P0039754 Piwil2 protein_coding protein_coding MGP_CASTEiJ_T0100637.1 MGP_CASTEiJ_G0037550.1 mouse_genomes_project 14 87827336 87827459 + Gm24680 snoRNA snoRNA MGP_CASTEiJ_T0039524.1 MGP_CASTEiJ_G0020709.1 mouse_genomes_project 14 54079674 54213922 + MGP_CASTEiJ_P0039524 Wdfy2 protein_coding protein_coding MGP_CASTEiJ_T0002628.1 MGP_CASTEiJ_G0002518.1 mouse_genomes_project 14 44401109 44401380 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0039394.1 MGP_CASTEiJ_G0020667.1 mouse_genomes_project 14 48347239 48441551 + MGP_CASTEiJ_P0039394 Ift88 protein_coding protein_coding MGP_CASTEiJ_T0039395.1 MGP_CASTEiJ_G0020667.1 mouse_genomes_project 14 48347257 48364922 + MGP_CASTEiJ_P0039395 Ift88 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039396.1 MGP_CASTEiJ_G0020667.1 mouse_genomes_project 14 48347283 48441551 + Ift88 protein_coding retained_intron MGP_CASTEiJ_T0039397.1 MGP_CASTEiJ_G0020667.1 mouse_genomes_project 14 48369591 48402245 + MGP_CASTEiJ_P0039397 Ift88 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039398.1 MGP_CASTEiJ_G0020667.1 mouse_genomes_project 14 48403918 48411697 + Ift88 protein_coding retained_intron MGP_CASTEiJ_T0038893.1 MGP_CASTEiJ_G0020518.1 mouse_genomes_project 14 41851660 41859776 - MGP_CASTEiJ_P0038893 Olfr749 protein_coding protein_coding MGP_CASTEiJ_T0012652.1 MGP_CASTEiJ_G0010815.1 mouse_genomes_project 14 61199239 61202550 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0037968.1 MGP_CASTEiJ_G0020240.1 mouse_genomes_project 14 90611 91087 + MGP_CASTEiJ_P0037968 Gm26661 protein_coding protein_coding MGP_CASTEiJ_T0099389.1 MGP_CASTEiJ_G0036302.1 mouse_genomes_project 14 47732517 47732576 - Gm27635 snRNA snRNA MGP_CASTEiJ_T0011034.1 MGP_CASTEiJ_G0009222.1 mouse_genomes_project 14 10453141 10453462 - Gm24140 misc_RNA misc_RNA MGP_CASTEiJ_T0038666.1 MGP_CASTEiJ_G0020436.1 mouse_genomes_project 14 27713371 27725714 - MGP_CASTEiJ_P0038666 9230112D13Rik protein_coding protein_coding MGP_CASTEiJ_T0009754.1 MGP_CASTEiJ_G0007942.1 mouse_genomes_project 14 109385990 109386072 + Mir19a miRNA miRNA MGP_CASTEiJ_T0038604.1 MGP_CASTEiJ_G0020411.1 mouse_genomes_project 14 25955005 25957808 + MGP_CASTEiJ_P0038604 Fam170b protein_coding protein_coding MGP_CASTEiJ_T0003425.1 MGP_CASTEiJ_G0003123.1 mouse_genomes_project 14 32589411 32620044 + Gm20642 antisense antisense MGP_CASTEiJ_T0099382.1 MGP_CASTEiJ_G0036295.1 mouse_genomes_project 14 40085788 40085908 - Gm23470 snRNA snRNA MGP_CASTEiJ_T0099409.1 MGP_CASTEiJ_G0036322.1 mouse_genomes_project 14 97970684 97970791 + Gm22021 snRNA snRNA MGP_CASTEiJ_T0006524.1 MGP_CASTEiJ_G0005406.1 mouse_genomes_project 14 43424898 43441349 + Gm26590 lincRNA lincRNA MGP_CASTEiJ_T0038442.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24024671 24128280 + MGP_CASTEiJ_P0038442 Pbrm1 protein_coding protein_coding MGP_CASTEiJ_T0038443.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24024671 24131361 + MGP_CASTEiJ_P0038443 Pbrm1 protein_coding protein_coding MGP_CASTEiJ_T0038444.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24024682 24032964 + MGP_CASTEiJ_P0038444 Pbrm1 protein_coding protein_coding MGP_CASTEiJ_T0038445.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24024690 24090344 + MGP_CASTEiJ_P0038445 Pbrm1 protein_coding protein_coding MGP_CASTEiJ_T0038446.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24024703 24128346 + MGP_CASTEiJ_P0038446 Pbrm1 protein_coding protein_coding MGP_CASTEiJ_T0038447.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24024710 24032932 + MGP_CASTEiJ_P0038447 Pbrm1 protein_coding protein_coding MGP_CASTEiJ_T0038448.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24024732 24037579 + Pbrm1 protein_coding processed_transcript MGP_CASTEiJ_T0038449.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24024741 24128498 + MGP_CASTEiJ_P0038449 Pbrm1 protein_coding protein_coding MGP_CASTEiJ_T0038450.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24030939 24123325 + MGP_CASTEiJ_P0038450 Pbrm1 protein_coding protein_coding MGP_CASTEiJ_T0038451.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24030939 24128345 + MGP_CASTEiJ_P0038451 Pbrm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038452.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24030942 24129394 + MGP_CASTEiJ_P0038452 Pbrm1 protein_coding protein_coding MGP_CASTEiJ_T0038453.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24030942 24128326 + MGP_CASTEiJ_P0038453 Pbrm1 protein_coding protein_coding MGP_CASTEiJ_T0038454.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24030942 24128327 + MGP_CASTEiJ_P0038454 Pbrm1 protein_coding protein_coding MGP_CASTEiJ_T0038455.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24030942 24128346 + MGP_CASTEiJ_P0038455 Pbrm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038456.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24030943 24129796 + MGP_CASTEiJ_P0038456 Pbrm1 protein_coding protein_coding MGP_CASTEiJ_T0038457.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24032911 24092949 + MGP_CASTEiJ_P0038457 Pbrm1 protein_coding protein_coding MGP_CASTEiJ_T0038458.1 MGP_CASTEiJ_G0020377.1 mouse_genomes_project 14 24092111 24095960 + Pbrm1 protein_coding retained_intron MGP_CASTEiJ_T0003415.1 MGP_CASTEiJ_G0003113.1 mouse_genomes_project 14 18366089 18371465 - Zmiz1os1 antisense antisense MGP_CASTEiJ_T0099405.1 MGP_CASTEiJ_G0036318.1 mouse_genomes_project 14 92501738 92501860 - Gm22984 snRNA snRNA MGP_CASTEiJ_T0038439.1 MGP_CASTEiJ_G0020375.1 mouse_genomes_project 14 24004368 24017992 + MGP_CASTEiJ_P0038439 Glt8d1 protein_coding protein_coding MGP_CASTEiJ_T0038440.1 MGP_CASTEiJ_G0020375.1 mouse_genomes_project 14 24004408 24017992 + MGP_CASTEiJ_P0038440 Glt8d1 protein_coding protein_coding MGP_CASTEiJ_T0038301.1 MGP_CASTEiJ_G0020339.1 mouse_genomes_project 14 18934391 18941799 + MGP_CASTEiJ_P0038301 protein_coding protein_coding MGP_CASTEiJ_T0038304.1 MGP_CASTEiJ_G0020339.1 mouse_genomes_project 14 18935040 18942542 + protein_coding processed_transcript MGP_CASTEiJ_T0038305.1 MGP_CASTEiJ_G0020339.1 mouse_genomes_project 14 18938010 18945107 + MGP_CASTEiJ_P0038305 protein_coding protein_coding MGP_CASTEiJ_T0002537.1 MGP_CASTEiJ_G0002440.1 mouse_genomes_project 14 44095775 44096282 + MGP_CASTEiJ_P0002537 TR_V_gene TR_V_gene MGP_CASTEiJ_T0012602.1 MGP_CASTEiJ_G0010765.1 mouse_genomes_project 14 10684607 10685485 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006503.1 MGP_CASTEiJ_G0005391.1 mouse_genomes_project 14 27982766 27989386 + A930038B10Rik lincRNA lincRNA MGP_CASTEiJ_T0006504.1 MGP_CASTEiJ_G0005391.1 mouse_genomes_project 14 27983591 27993917 + A930038B10Rik lincRNA lincRNA MGP_CASTEiJ_T0002621.1 MGP_CASTEiJ_G0002511.1 mouse_genomes_project 14 44198532 44199029 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0040084.1 MGP_CASTEiJ_G0020912.1 mouse_genomes_project 14 113491802 113533072 + MGP_CASTEiJ_P0040084 Dnajc3 protein_coding protein_coding MGP_CASTEiJ_T0040085.1 MGP_CASTEiJ_G0020912.1 mouse_genomes_project 14 113491889 113529599 + MGP_CASTEiJ_P0040085 Dnajc3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039354.1 MGP_CASTEiJ_G0020641.1 mouse_genomes_project 14 46816682 46819110 + MGP_CASTEiJ_P0039354 Mcpt1 protein_coding protein_coding MGP_CASTEiJ_T0038038.1 MGP_CASTEiJ_G0020266.1 mouse_genomes_project 14 6857029 6866025 + MGP_CASTEiJ_P0038038 Il3ra protein_coding protein_coding MGP_CASTEiJ_T0037975.1 MGP_CASTEiJ_G0020244.1 mouse_genomes_project 14 393356 404437 + MGP_CASTEiJ_P0037975 protein_coding protein_coding MGP_CASTEiJ_T0037976.1 MGP_CASTEiJ_G0020244.1 mouse_genomes_project 14 402663 403140 + MGP_CASTEiJ_P0037976 protein_coding protein_coding MGP_CASTEiJ_T0037973.1 MGP_CASTEiJ_G0020243.1 mouse_genomes_project 14 317201 376009 + MGP_CASTEiJ_P0037973 Abhd6 protein_coding protein_coding MGP_CASTEiJ_T0037974.1 MGP_CASTEiJ_G0020243.1 mouse_genomes_project 14 317265 375316 + MGP_CASTEiJ_P0037974 Abhd6 protein_coding protein_coding MGP_CASTEiJ_T0003456.1 MGP_CASTEiJ_G0003148.1 mouse_genomes_project 14 60901528 60922091 + Gm27175 antisense antisense MGP_CASTEiJ_T0006521.1 MGP_CASTEiJ_G0005404.1 mouse_genomes_project 14 42655281 42712842 + lincRNA lincRNA MGP_CASTEiJ_T0006522.1 MGP_CASTEiJ_G0005404.1 mouse_genomes_project 14 42710340 42712970 + lincRNA lincRNA MGP_CASTEiJ_T0003434.1 MGP_CASTEiJ_G0003131.1 mouse_genomes_project 14 45666584 45667489 + Mhrt antisense antisense MGP_CASTEiJ_T0003435.1 MGP_CASTEiJ_G0003131.1 mouse_genomes_project 14 45666693 45672244 + Mhrt antisense antisense MGP_CASTEiJ_T0038431.1 MGP_CASTEiJ_G0020373.1 mouse_genomes_project 14 23946094 23988409 + MGP_CASTEiJ_P0038431 Nek4 protein_coding protein_coding MGP_CASTEiJ_T0038682.1 MGP_CASTEiJ_G0020441.1 mouse_genomes_project 14 29058758 29062162 - MGP_CASTEiJ_P0038682 4930596D02Rik protein_coding protein_coding MGP_CASTEiJ_T0038645.1 MGP_CASTEiJ_G0020426.1 mouse_genomes_project 14 27270845 27285359 + MGP_CASTEiJ_P0038645 Anxa8 protein_coding protein_coding MGP_CASTEiJ_T0038646.1 MGP_CASTEiJ_G0020426.1 mouse_genomes_project 14 27270889 27284809 + MGP_CASTEiJ_P0038646 Anxa8 protein_coding protein_coding MGP_CASTEiJ_T0038963.1 MGP_CASTEiJ_G0020545.1 mouse_genomes_project 14 43135840 43136454 - MGP_CASTEiJ_P0038963 Rnase13 protein_coding protein_coding MGP_CASTEiJ_T0098713.1 MGP_CASTEiJ_G0035644.1 mouse_genomes_project 14 41939716 41940014 - Rpph1 ribozyme ribozyme MGP_CASTEiJ_T0039472.1 MGP_CASTEiJ_G0020688.1 mouse_genomes_project 14 51338383 51374175 - MGP_CASTEiJ_P0039472 Nupl1 protein_coding protein_coding MGP_CASTEiJ_T0009713.1 MGP_CASTEiJ_G0007901.1 mouse_genomes_project 14 18741788 18741898 - Gm23701 miRNA miRNA MGP_CASTEiJ_T0012659.1 MGP_CASTEiJ_G0010822.1 mouse_genomes_project 14 66392995 66406819 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0038298.1 MGP_CASTEiJ_G0020337.1 mouse_genomes_project 14 18933245 18938509 + protein_coding processed_transcript MGP_CASTEiJ_T0038300.1 MGP_CASTEiJ_G0020337.1 mouse_genomes_project 14 18934068 18943849 + MGP_CASTEiJ_P0038300 protein_coding protein_coding MGP_CASTEiJ_T0038303.1 MGP_CASTEiJ_G0020337.1 mouse_genomes_project 14 18935040 18942540 + protein_coding processed_transcript MGP_CASTEiJ_T0038307.1 MGP_CASTEiJ_G0020337.1 mouse_genomes_project 14 18938010 18945083 + MGP_CASTEiJ_P0038307 protein_coding protein_coding MGP_CASTEiJ_T0037980.1 MGP_CASTEiJ_G0020247.1 mouse_genomes_project 14 540176 550477 + MGP_CASTEiJ_P0037980 Kctd6 protein_coding protein_coding MGP_CASTEiJ_T0037981.1 MGP_CASTEiJ_G0020247.1 mouse_genomes_project 14 540524 550471 + MGP_CASTEiJ_P0037981 Kctd6 protein_coding protein_coding MGP_CASTEiJ_T0039610.1 MGP_CASTEiJ_G0020747.1 mouse_genomes_project 14 57401271 57415815 + MGP_CASTEiJ_P0039610 Clu protein_coding protein_coding MGP_CASTEiJ_T0039611.1 MGP_CASTEiJ_G0020747.1 mouse_genomes_project 14 57401430 57409911 + MGP_CASTEiJ_P0039611 Clu protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039612.1 MGP_CASTEiJ_G0020747.1 mouse_genomes_project 14 57401442 57406143 + Clu protein_coding retained_intron MGP_CASTEiJ_T0039613.1 MGP_CASTEiJ_G0020747.1 mouse_genomes_project 14 57402506 57410226 + MGP_CASTEiJ_P0039613 Clu protein_coding protein_coding MGP_CASTEiJ_T0039614.1 MGP_CASTEiJ_G0020747.1 mouse_genomes_project 14 57403403 57410130 + MGP_CASTEiJ_P0039614 Clu protein_coding protein_coding MGP_CASTEiJ_T0039615.1 MGP_CASTEiJ_G0020747.1 mouse_genomes_project 14 57403575 57410107 + MGP_CASTEiJ_P0039615 Clu protein_coding protein_coding MGP_CASTEiJ_T0039616.1 MGP_CASTEiJ_G0020747.1 mouse_genomes_project 14 57404656 57410042 + MGP_CASTEiJ_P0039616 Clu protein_coding protein_coding MGP_CASTEiJ_T0039617.1 MGP_CASTEiJ_G0020747.1 mouse_genomes_project 14 57404901 57408560 + MGP_CASTEiJ_P0039617 Clu protein_coding protein_coding MGP_CASTEiJ_T0039618.1 MGP_CASTEiJ_G0020747.1 mouse_genomes_project 14 57408266 57410239 + Clu protein_coding retained_intron MGP_CASTEiJ_T0039507.1 MGP_CASTEiJ_G0020703.1 mouse_genomes_project 14 53469622 53488588 - MGP_CASTEiJ_P0039507 Dleu7 protein_coding protein_coding MGP_CASTEiJ_T0038515.1 MGP_CASTEiJ_G0020388.1 mouse_genomes_project 14 24377768 24458598 - MGP_CASTEiJ_P0038515 Sh3bp5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038516.1 MGP_CASTEiJ_G0020388.1 mouse_genomes_project 14 24393367 24439883 - MGP_CASTEiJ_P0038516 Sh3bp5 protein_coding protein_coding MGP_CASTEiJ_T0038517.1 MGP_CASTEiJ_G0020388.1 mouse_genomes_project 14 24393367 24458585 - MGP_CASTEiJ_P0038517 Sh3bp5 protein_coding protein_coding MGP_CASTEiJ_T0038518.1 MGP_CASTEiJ_G0020388.1 mouse_genomes_project 14 24397193 24429540 - Sh3bp5 protein_coding processed_transcript MGP_CASTEiJ_T0009727.1 MGP_CASTEiJ_G0007915.1 mouse_genomes_project 14 46882639 46882707 - Mir6949 miRNA miRNA MGP_CASTEiJ_T0100620.1 MGP_CASTEiJ_G0037533.1 mouse_genomes_project 14 53869038 53869170 - Gm23816 snoRNA snoRNA MGP_CASTEiJ_T0098511.1 MGP_CASTEiJ_G0035442.1 mouse_genomes_project 14 80602134 80602234 + Gm26405 rRNA rRNA MGP_CASTEiJ_T0038597.1 MGP_CASTEiJ_G0020407.1 mouse_genomes_project 14 25615765 25684165 + MGP_CASTEiJ_P0038597 Ercc6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039941.1 MGP_CASTEiJ_G0020860.1 mouse_genomes_project 14 71725704 71749484 - MGP_CASTEiJ_P0039941 Pcdh8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039942.1 MGP_CASTEiJ_G0020860.1 mouse_genomes_project 14 71744951 71749487 - MGP_CASTEiJ_P0039942 Pcdh8 protein_coding protein_coding MGP_CASTEiJ_T0039943.1 MGP_CASTEiJ_G0020860.1 mouse_genomes_project 14 71744956 71749487 - MGP_CASTEiJ_P0039943 Pcdh8 protein_coding protein_coding MGP_CASTEiJ_T0039944.1 MGP_CASTEiJ_G0020860.1 mouse_genomes_project 14 71744960 71749487 - Pcdh8 protein_coding retained_intron MGP_CASTEiJ_T0039945.1 MGP_CASTEiJ_G0020860.1 mouse_genomes_project 14 71747206 71749379 - Pcdh8 protein_coding processed_transcript MGP_CASTEiJ_T0006513.1 MGP_CASTEiJ_G0005399.1 mouse_genomes_project 14 39734364 39865712 + Otx2os1 lincRNA lincRNA MGP_CASTEiJ_T0006514.1 MGP_CASTEiJ_G0005399.1 mouse_genomes_project 14 39735240 39790646 + Otx2os1 lincRNA lincRNA MGP_CASTEiJ_T0006515.1 MGP_CASTEiJ_G0005399.1 mouse_genomes_project 14 39735347 39788515 + Otx2os1 lincRNA lincRNA MGP_CASTEiJ_T0038356.1 MGP_CASTEiJ_G0020355.1 mouse_genomes_project 14 21338281 21341507 + Wnt5a protein_coding processed_transcript MGP_CASTEiJ_T0038357.1 MGP_CASTEiJ_G0020355.1 mouse_genomes_project 14 21338456 21357602 + MGP_CASTEiJ_P0038357 Wnt5a protein_coding protein_coding MGP_CASTEiJ_T0038358.1 MGP_CASTEiJ_G0020355.1 mouse_genomes_project 14 21343014 21344322 + Wnt5a protein_coding processed_transcript MGP_CASTEiJ_T0038359.1 MGP_CASTEiJ_G0020355.1 mouse_genomes_project 14 21343786 21357895 + Wnt5a protein_coding processed_transcript MGP_CASTEiJ_T0038360.1 MGP_CASTEiJ_G0020355.1 mouse_genomes_project 14 21343847 21344304 + Wnt5a protein_coding processed_transcript MGP_CASTEiJ_T0039363.1 MGP_CASTEiJ_G0020648.1 mouse_genomes_project 14 46941945 46944060 - MGP_CASTEiJ_P0039363 Gzmd protein_coding protein_coding MGP_CASTEiJ_T0016659.1 MGP_CASTEiJ_G0014587.1 mouse_genomes_project 14 58848985 58924263 - 4930438E09Rik processed_transcript processed_transcript MGP_CASTEiJ_T0038741.1 MGP_CASTEiJ_G0020468.1 mouse_genomes_project 14 36339973 36416278 - MGP_CASTEiJ_P0038741 Fermt2 protein_coding protein_coding MGP_CASTEiJ_T0038742.1 MGP_CASTEiJ_G0020468.1 mouse_genomes_project 14 36351708 36360469 - MGP_CASTEiJ_P0038742 Fermt2 protein_coding protein_coding MGP_CASTEiJ_T0038743.1 MGP_CASTEiJ_G0020468.1 mouse_genomes_project 14 36358485 36416169 - MGP_CASTEiJ_P0038743 Fermt2 protein_coding protein_coding MGP_CASTEiJ_T0038744.1 MGP_CASTEiJ_G0020468.1 mouse_genomes_project 14 36389240 36415991 - Fermt2 protein_coding processed_transcript MGP_CASTEiJ_T0100618.1 MGP_CASTEiJ_G0037531.1 mouse_genomes_project 14 49628122 49628255 - Gm25614 snoRNA snoRNA MGP_CASTEiJ_T0038842.1 MGP_CASTEiJ_G0020489.1 mouse_genomes_project 14 40096226 40156312 - MGP_CASTEiJ_P0038842 Exoc5 protein_coding protein_coding MGP_CASTEiJ_T0038843.1 MGP_CASTEiJ_G0020489.1 mouse_genomes_project 14 40097832 40156055 - MGP_CASTEiJ_P0038843 Exoc5 protein_coding protein_coding MGP_CASTEiJ_T0038844.1 MGP_CASTEiJ_G0020489.1 mouse_genomes_project 14 40099548 40105137 - Exoc5 protein_coding retained_intron MGP_CASTEiJ_T0038845.1 MGP_CASTEiJ_G0020489.1 mouse_genomes_project 14 40100830 40108615 - MGP_CASTEiJ_P0038845 Exoc5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038846.1 MGP_CASTEiJ_G0020489.1 mouse_genomes_project 14 40101536 40108879 - Exoc5 protein_coding retained_intron MGP_CASTEiJ_T0038847.1 MGP_CASTEiJ_G0020489.1 mouse_genomes_project 14 40112031 40155837 - MGP_CASTEiJ_P0038847 Exoc5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038848.1 MGP_CASTEiJ_G0020489.1 mouse_genomes_project 14 40114934 40124111 - Exoc5 protein_coding retained_intron MGP_CASTEiJ_T0038849.1 MGP_CASTEiJ_G0020489.1 mouse_genomes_project 14 40123460 40136624 - MGP_CASTEiJ_P0038849 Exoc5 protein_coding protein_coding MGP_CASTEiJ_T0039697.1 MGP_CASTEiJ_G0020777.1 mouse_genomes_project 14 60906290 60911181 - MGP_CASTEiJ_P0039697 protein_coding protein_coding MGP_CASTEiJ_T0039828.1 MGP_CASTEiJ_G0020820.1 mouse_genomes_project 14 65144430 65182291 + MGP_CASTEiJ_P0039828 Sucla2 protein_coding protein_coding MGP_CASTEiJ_T0039829.1 MGP_CASTEiJ_G0020820.1 mouse_genomes_project 14 65174557 65178754 + Sucla2 protein_coding processed_transcript MGP_CASTEiJ_T0039830.1 MGP_CASTEiJ_G0020820.1 mouse_genomes_project 14 65174590 65237426 + MGP_CASTEiJ_P0039830 Sucla2 protein_coding protein_coding MGP_CASTEiJ_T0039831.1 MGP_CASTEiJ_G0020820.1 mouse_genomes_project 14 65174691 65237067 + MGP_CASTEiJ_P0039831 Sucla2 protein_coding protein_coding MGP_CASTEiJ_T0039832.1 MGP_CASTEiJ_G0020820.1 mouse_genomes_project 14 65188047 65188637 + Sucla2 protein_coding retained_intron MGP_CASTEiJ_T0039833.1 MGP_CASTEiJ_G0020820.1 mouse_genomes_project 14 65228993 65230403 + Sucla2 protein_coding retained_intron MGP_CASTEiJ_T0039834.1 MGP_CASTEiJ_G0020820.1 mouse_genomes_project 14 65236689 65237426 + Sucla2 protein_coding processed_transcript MGP_CASTEiJ_T0039170.1 MGP_CASTEiJ_G0020591.1 mouse_genomes_project 14 45585429 45591544 + MGP_CASTEiJ_P0039170 Pabpn1 protein_coding protein_coding MGP_CASTEiJ_T0039171.1 MGP_CASTEiJ_G0020591.1 mouse_genomes_project 14 45587076 45592531 + MGP_CASTEiJ_P0039171 Pabpn1 protein_coding protein_coding MGP_CASTEiJ_T0039172.1 MGP_CASTEiJ_G0020591.1 mouse_genomes_project 14 45587083 45592459 + MGP_CASTEiJ_P0039172 Pabpn1 protein_coding protein_coding MGP_CASTEiJ_T0039173.1 MGP_CASTEiJ_G0020591.1 mouse_genomes_project 14 45587084 45592419 + MGP_CASTEiJ_P0039173 Pabpn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039174.1 MGP_CASTEiJ_G0020591.1 mouse_genomes_project 14 45587084 45593297 + MGP_CASTEiJ_P0039174 Pabpn1 protein_coding protein_coding MGP_CASTEiJ_T0039175.1 MGP_CASTEiJ_G0020591.1 mouse_genomes_project 14 45588981 45592497 + MGP_CASTEiJ_P0039175 Pabpn1 protein_coding protein_coding MGP_CASTEiJ_T0039176.1 MGP_CASTEiJ_G0020591.1 mouse_genomes_project 14 45589197 45590254 + MGP_CASTEiJ_P0039176 Pabpn1 protein_coding protein_coding MGP_CASTEiJ_T0003436.1 MGP_CASTEiJ_G0003132.1 mouse_genomes_project 14 45670914 45671245 + Gm29015 antisense antisense MGP_CASTEiJ_T0006558.1 MGP_CASTEiJ_G0005432.1 mouse_genomes_project 14 112860220 112896203 + 1700044C05Rik lincRNA lincRNA MGP_CASTEiJ_T0012613.1 MGP_CASTEiJ_G0010776.1 mouse_genomes_project 14 19063334 19064106 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012643.1 MGP_CASTEiJ_G0010806.1 mouse_genomes_project 14 48360867 48361660 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039703.1 MGP_CASTEiJ_G0020780.1 mouse_genomes_project 14 60964712 60984429 + MGP_CASTEiJ_P0039703 protein_coding protein_coding MGP_CASTEiJ_T0038114.1 MGP_CASTEiJ_G0020292.1 mouse_genomes_project 14 13023967 13059069 + MGP_CASTEiJ_P0038114 Fam149b protein_coding protein_coding MGP_CASTEiJ_T0038115.1 MGP_CASTEiJ_G0020292.1 mouse_genomes_project 14 13023967 13044323 + MGP_CASTEiJ_P0038115 Fam149b protein_coding protein_coding MGP_CASTEiJ_T0038116.1 MGP_CASTEiJ_G0020292.1 mouse_genomes_project 14 13023967 13059069 + MGP_CASTEiJ_P0038116 Fam149b protein_coding protein_coding MGP_CASTEiJ_T0038117.1 MGP_CASTEiJ_G0020292.1 mouse_genomes_project 14 13024027 13059069 + MGP_CASTEiJ_P0038117 Fam149b protein_coding protein_coding MGP_CASTEiJ_T0009712.1 MGP_CASTEiJ_G0007900.1 mouse_genomes_project 14 18444439 18444524 + Mir3075 miRNA miRNA MGP_CASTEiJ_T0039218.1 MGP_CASTEiJ_G0020605.1 mouse_genomes_project 14 46215122 46226970 + MGP_CASTEiJ_P0039218 Dhrs4 protein_coding protein_coding MGP_CASTEiJ_T0039760.1 MGP_CASTEiJ_G0020799.1 mouse_genomes_project 14 62011202 62014380 - MGP_CASTEiJ_P0039760 Sftpc protein_coding protein_coding MGP_CASTEiJ_T0002576.1 MGP_CASTEiJ_G0002476.1 mouse_genomes_project 14 44444150 44444627 + MGP_CASTEiJ_P0002576 Trav17 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002577.1 MGP_CASTEiJ_G0002476.1 mouse_genomes_project 14 44444150 44444627 + MGP_CASTEiJ_P0002577 Trav17 TR_V_gene TR_V_gene MGP_CASTEiJ_T0040115.1 MGP_CASTEiJ_G0020921.1 mouse_genomes_project 14 116163354 116217482 - MGP_CASTEiJ_P0040115 Slc15a1 protein_coding protein_coding MGP_CASTEiJ_T0038885.1 MGP_CASTEiJ_G0020510.1 mouse_genomes_project 14 41535317 41536359 + MGP_CASTEiJ_P0038885 protein_coding protein_coding MGP_CASTEiJ_T0038338.1 MGP_CASTEiJ_G0020346.1 mouse_genomes_project 14 19622597 19644447 + MGP_CASTEiJ_P0038338 Asb14 protein_coding protein_coding MGP_CASTEiJ_T0038339.1 MGP_CASTEiJ_G0020346.1 mouse_genomes_project 14 19622642 19643607 + MGP_CASTEiJ_P0038339 Asb14 protein_coding protein_coding MGP_CASTEiJ_T0038340.1 MGP_CASTEiJ_G0020346.1 mouse_genomes_project 14 19622652 19630162 + Asb14 protein_coding processed_transcript MGP_CASTEiJ_T0038341.1 MGP_CASTEiJ_G0020346.1 mouse_genomes_project 14 19622660 19632345 + MGP_CASTEiJ_P0038341 Asb14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038342.1 MGP_CASTEiJ_G0020346.1 mouse_genomes_project 14 19632294 19644448 + MGP_CASTEiJ_P0038342 Asb14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006533.1 MGP_CASTEiJ_G0005414.1 mouse_genomes_project 14 53395524 53397931 - Gm26969 lincRNA lincRNA MGP_CASTEiJ_T0009749.1 MGP_CASTEiJ_G0007937.1 mouse_genomes_project 14 96983342 96983447 - Gm22877 miRNA miRNA MGP_CASTEiJ_T0038343.1 MGP_CASTEiJ_G0020347.1 mouse_genomes_project 14 19648613 19708369 - MGP_CASTEiJ_P0038343 Appl1 protein_coding protein_coding MGP_CASTEiJ_T0038344.1 MGP_CASTEiJ_G0020347.1 mouse_genomes_project 14 19686156 19694636 - Appl1 protein_coding retained_intron MGP_CASTEiJ_T0038345.1 MGP_CASTEiJ_G0020347.1 mouse_genomes_project 14 19687449 19707635 - Appl1 protein_coding retained_intron MGP_CASTEiJ_T0038346.1 MGP_CASTEiJ_G0020347.1 mouse_genomes_project 14 19699758 19707598 - Appl1 protein_coding retained_intron MGP_CASTEiJ_T0039109.1 MGP_CASTEiJ_G0020573.1 mouse_genomes_project 14 45132356 45136679 + MGP_CASTEiJ_P0039109 Rem2 protein_coding protein_coding MGP_CASTEiJ_T0039110.1 MGP_CASTEiJ_G0020573.1 mouse_genomes_project 14 45132495 45134150 + Rem2 protein_coding retained_intron MGP_CASTEiJ_T0039111.1 MGP_CASTEiJ_G0020573.1 mouse_genomes_project 14 45132507 45135925 + MGP_CASTEiJ_P0039111 Rem2 protein_coding protein_coding MGP_CASTEiJ_T0039112.1 MGP_CASTEiJ_G0020573.1 mouse_genomes_project 14 45133726 45135363 + MGP_CASTEiJ_P0039112 Rem2 protein_coding protein_coding MGP_CASTEiJ_T0038299.1 MGP_CASTEiJ_G0020338.1 mouse_genomes_project 14 18933751 18943658 + MGP_CASTEiJ_P0038299 protein_coding protein_coding MGP_CASTEiJ_T0038302.1 MGP_CASTEiJ_G0020338.1 mouse_genomes_project 14 18934706 18941799 + MGP_CASTEiJ_P0038302 protein_coding protein_coding MGP_CASTEiJ_T0038306.1 MGP_CASTEiJ_G0020338.1 mouse_genomes_project 14 18938010 18945027 + MGP_CASTEiJ_P0038306 protein_coding protein_coding MGP_CASTEiJ_T0039561.1 MGP_CASTEiJ_G0020725.1 mouse_genomes_project 14 55256393 55263428 + MGP_CASTEiJ_P0039561 Sox7 protein_coding protein_coding MGP_CASTEiJ_T0039562.1 MGP_CASTEiJ_G0020725.1 mouse_genomes_project 14 55256444 55276397 + MGP_CASTEiJ_P0039562 Sox7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006552.1 MGP_CASTEiJ_G0005427.1 mouse_genomes_project 14 96292020 96296287 + Gm26778 lincRNA lincRNA MGP_CASTEiJ_T0100635.1 MGP_CASTEiJ_G0037548.1 mouse_genomes_project 14 85114832 85114962 - Gm24127 snoRNA snoRNA MGP_CASTEiJ_T0000874.1 MGP_CASTEiJ_G0000813.1 mouse_genomes_project 14 45790527 45792702 - TEC TEC MGP_CASTEiJ_T0016685.1 MGP_CASTEiJ_G0014599.1 mouse_genomes_project 14 116869695 116873156 - A330035P11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016686.1 MGP_CASTEiJ_G0014599.1 mouse_genomes_project 14 116870600 116873177 - A330035P11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0038365.1 MGP_CASTEiJ_G0020358.1 mouse_genomes_project 14 22871806 22880086 + MGP_CASTEiJ_P0038365 Selk protein_coding protein_coding MGP_CASTEiJ_T0038366.1 MGP_CASTEiJ_G0020358.1 mouse_genomes_project 14 22871923 22878241 + Selk protein_coding processed_transcript MGP_CASTEiJ_T0002567.1 MGP_CASTEiJ_G0002467.1 mouse_genomes_project 14 44291970 44292586 + MGP_CASTEiJ_P0002567 TR_V_gene TR_V_gene MGP_CASTEiJ_T0100632.1 MGP_CASTEiJ_G0037545.1 mouse_genomes_project 14 82282518 82282647 + Gm25415 snoRNA snoRNA MGP_CASTEiJ_T0038717.1 MGP_CASTEiJ_G0020454.1 mouse_genomes_project 14 34432734 34443606 - MGP_CASTEiJ_P0038717 Dydc2 protein_coding protein_coding MGP_CASTEiJ_T0038643.1 MGP_CASTEiJ_G0020424.1 mouse_genomes_project 14 27228526 27287528 - MGP_CASTEiJ_P0038643 A630023A22Rik protein_coding protein_coding MGP_CASTEiJ_T0039401.1 MGP_CASTEiJ_G0020670.1 mouse_genomes_project 14 48515656 48602795 - MGP_CASTEiJ_P0039401 Xpo4 protein_coding protein_coding MGP_CASTEiJ_T0039402.1 MGP_CASTEiJ_G0020670.1 mouse_genomes_project 14 48516925 48602321 - MGP_CASTEiJ_P0039402 Xpo4 protein_coding protein_coding MGP_CASTEiJ_T0039403.1 MGP_CASTEiJ_G0020670.1 mouse_genomes_project 14 48531086 48602357 - MGP_CASTEiJ_P0039403 Xpo4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039404.1 MGP_CASTEiJ_G0020670.1 mouse_genomes_project 14 48563554 48602321 - MGP_CASTEiJ_P0039404 Xpo4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039405.1 MGP_CASTEiJ_G0020670.1 mouse_genomes_project 14 48575863 48602329 - Xpo4 protein_coding processed_transcript MGP_CASTEiJ_T0039406.1 MGP_CASTEiJ_G0020670.1 mouse_genomes_project 14 48575869 48602600 - Xpo4 protein_coding retained_intron MGP_CASTEiJ_T0039407.1 MGP_CASTEiJ_G0020670.1 mouse_genomes_project 14 48575884 48602332 - Xpo4 protein_coding retained_intron MGP_CASTEiJ_T0039408.1 MGP_CASTEiJ_G0020670.1 mouse_genomes_project 14 48576108 48602795 - MGP_CASTEiJ_P0039408 Xpo4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039410.1 MGP_CASTEiJ_G0020670.1 mouse_genomes_project 14 48576591 48582732 - Xpo4 protein_coding retained_intron MGP_CASTEiJ_T0039411.1 MGP_CASTEiJ_G0020670.1 mouse_genomes_project 14 48582036 48602354 - Xpo4 protein_coding retained_intron MGP_CASTEiJ_T0098512.1 MGP_CASTEiJ_G0035443.1 mouse_genomes_project 14 96118058 96118106 + Gm23764 rRNA rRNA MGP_CASTEiJ_T0002582.1 MGP_CASTEiJ_G0002480.1 mouse_genomes_project 14 44530360 44530978 + MGP_CASTEiJ_P0002582 Trdv1 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002583.1 MGP_CASTEiJ_G0002480.1 mouse_genomes_project 14 44530360 44530978 + MGP_CASTEiJ_P0002583 Trdv1 TR_V_gene TR_V_gene MGP_CASTEiJ_T0038025.1 MGP_CASTEiJ_G0020259.1 mouse_genomes_project 14 6218721 6230985 + MGP_CASTEiJ_P0038025 Sntn protein_coding protein_coding MGP_CASTEiJ_T0002530.1 MGP_CASTEiJ_G0002433.1 mouse_genomes_project 14 44040476 44040702 + MGP_CASTEiJ_P0002530 Trav13-1 TR_V_gene TR_V_gene MGP_CASTEiJ_T0038702.1 MGP_CASTEiJ_G0020449.1 mouse_genomes_project 14 30463273 30480401 - MGP_CASTEiJ_P0038702 Ghitm protein_coding protein_coding MGP_CASTEiJ_T0038703.1 MGP_CASTEiJ_G0020449.1 mouse_genomes_project 14 30463273 30480584 - MGP_CASTEiJ_P0038703 Ghitm protein_coding protein_coding MGP_CASTEiJ_T0037994.1 MGP_CASTEiJ_G0020250.1 mouse_genomes_project 14 675079 707295 - MGP_CASTEiJ_P0037994 Oit1 protein_coding protein_coding MGP_CASTEiJ_T0039825.1 MGP_CASTEiJ_G0020817.1 mouse_genomes_project 14 64964129 64987203 - MGP_CASTEiJ_P0039825 Itm2b protein_coding protein_coding MGP_CASTEiJ_T0038459.1 MGP_CASTEiJ_G0020378.1 mouse_genomes_project 14 24096051 24138636 - MGP_CASTEiJ_P0038459 Smim4 protein_coding protein_coding MGP_CASTEiJ_T0038460.1 MGP_CASTEiJ_G0020378.1 mouse_genomes_project 14 24096586 24138656 - MGP_CASTEiJ_P0038460 Smim4 protein_coding protein_coding MGP_CASTEiJ_T0038461.1 MGP_CASTEiJ_G0020378.1 mouse_genomes_project 14 24134281 24138581 - MGP_CASTEiJ_P0038461 Smim4 protein_coding protein_coding MGP_CASTEiJ_T0038462.1 MGP_CASTEiJ_G0020378.1 mouse_genomes_project 14 24134579 24138673 - MGP_CASTEiJ_P0038462 Smim4 protein_coding protein_coding MGP_CASTEiJ_T0038803.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38643426 38741679 + MGP_CASTEiJ_P0038803 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038804.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38644276 38741679 + MGP_CASTEiJ_P0038804 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038805.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38644281 38661479 + MGP_CASTEiJ_P0038805 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038806.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38644359 38741686 + MGP_CASTEiJ_P0038806 Ktn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038807.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660919 38741685 + MGP_CASTEiJ_P0038807 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038808.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660950 38741413 + MGP_CASTEiJ_P0038808 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038809.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660950 38741409 + MGP_CASTEiJ_P0038809 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038810.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660950 38741413 + MGP_CASTEiJ_P0038810 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038811.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660950 38741415 + MGP_CASTEiJ_P0038811 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038812.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660950 38741413 + MGP_CASTEiJ_P0038812 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038813.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660950 38741401 + MGP_CASTEiJ_P0038813 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038814.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660950 38741415 + MGP_CASTEiJ_P0038814 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038815.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660950 38741406 + MGP_CASTEiJ_P0038815 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038816.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660950 38741413 + MGP_CASTEiJ_P0038816 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038817.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660950 38741413 + MGP_CASTEiJ_P0038817 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038818.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660950 38741413 + MGP_CASTEiJ_P0038818 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038819.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660950 38741411 + MGP_CASTEiJ_P0038819 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038820.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660950 38741413 + MGP_CASTEiJ_P0038820 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038821.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660950 38741410 + MGP_CASTEiJ_P0038821 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038822.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660950 38741413 + MGP_CASTEiJ_P0038822 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038823.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38660950 38741413 + MGP_CASTEiJ_P0038823 Ktn1 protein_coding protein_coding MGP_CASTEiJ_T0038824.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38701640 38705437 + Ktn1 protein_coding retained_intron MGP_CASTEiJ_T0038825.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38706656 38718884 + Ktn1 protein_coding retained_intron MGP_CASTEiJ_T0038826.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38716803 38730024 + Ktn1 protein_coding retained_intron MGP_CASTEiJ_T0038827.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38729907 38731383 + Ktn1 protein_coding retained_intron MGP_CASTEiJ_T0038828.1 MGP_CASTEiJ_G0020485.1 mouse_genomes_project 14 38734801 38741683 + Ktn1 protein_coding retained_intron MGP_CASTEiJ_T0009725.1 MGP_CASTEiJ_G0007913.1 mouse_genomes_project 14 45646009 45646092 - Mir208a miRNA miRNA MGP_CASTEiJ_T0039974.1 MGP_CASTEiJ_G0020872.1 mouse_genomes_project 14 90852931 91268783 - MGP_CASTEiJ_P0039974 Dach1 protein_coding protein_coding MGP_CASTEiJ_T0039975.1 MGP_CASTEiJ_G0020872.1 mouse_genomes_project 14 90852931 91268783 - MGP_CASTEiJ_P0039975 Dach1 protein_coding protein_coding MGP_CASTEiJ_T0039976.1 MGP_CASTEiJ_G0020872.1 mouse_genomes_project 14 90897963 91268960 - Dach1 protein_coding retained_intron MGP_CASTEiJ_T0039682.1 MGP_CASTEiJ_G0020767.1 mouse_genomes_project 14 59658390 59701635 - MGP_CASTEiJ_P0039682 Nefm protein_coding protein_coding MGP_CASTEiJ_T0039684.1 MGP_CASTEiJ_G0020767.1 mouse_genomes_project 14 59696121 59701635 - MGP_CASTEiJ_P0039684 Nefm protein_coding protein_coding MGP_CASTEiJ_T0038878.1 MGP_CASTEiJ_G0020506.1 mouse_genomes_project 14 41439746 41440697 - Olfr735 protein_coding transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0038879.1 MGP_CASTEiJ_G0020506.1 mouse_genomes_project 14 41439746 41440811 - MGP_CASTEiJ_P0038879 Olfr735 protein_coding protein_coding MGP_CASTEiJ_T0038880.1 MGP_CASTEiJ_G0020506.1 mouse_genomes_project 14 41440149 41447982 - Olfr735 protein_coding processed_transcript MGP_CASTEiJ_T0100653.1 MGP_CASTEiJ_G0037566.1 mouse_genomes_project 14 113295964 113296095 + Gm22379 snoRNA snoRNA MGP_CASTEiJ_T0040164.1 MGP_CASTEiJ_G0020938.1 mouse_genomes_project 14 118737963 119445164 - MGP_CASTEiJ_P0040164 Fgf14 protein_coding protein_coding MGP_CASTEiJ_T0040165.1 MGP_CASTEiJ_G0020938.1 mouse_genomes_project 14 118738347 118972592 - MGP_CASTEiJ_P0040165 Fgf14 protein_coding protein_coding MGP_CASTEiJ_T0038101.1 MGP_CASTEiJ_G0020285.1 mouse_genomes_project 14 12440364 12453674 - MGP_CASTEiJ_P0038101 2700060E02Rik protein_coding protein_coding MGP_CASTEiJ_T0040042.1 MGP_CASTEiJ_G0020893.1 mouse_genomes_project 14 97828911 97835586 - MGP_CASTEiJ_P0040042 Pou4f1 protein_coding protein_coding MGP_CASTEiJ_T0040043.1 MGP_CASTEiJ_G0020893.1 mouse_genomes_project 14 97831192 97832570 - Pou4f1 protein_coding processed_transcript MGP_CASTEiJ_T0002630.1 MGP_CASTEiJ_G0002520.1 mouse_genomes_project 14 44579341 44579960 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0038041.1 MGP_CASTEiJ_G0020268.1 mouse_genomes_project 14 6955870 6966107 - MGP_CASTEiJ_P0038041 protein_coding protein_coding MGP_CASTEiJ_T0038055.1 MGP_CASTEiJ_G0020273.1 mouse_genomes_project 14 8823434 8887426 + MGP_CASTEiJ_P0038055 Ngly1 protein_coding protein_coding MGP_CASTEiJ_T0038056.1 MGP_CASTEiJ_G0020273.1 mouse_genomes_project 14 8823481 8859442 + Ngly1 protein_coding retained_intron MGP_CASTEiJ_T0038057.1 MGP_CASTEiJ_G0020273.1 mouse_genomes_project 14 8857113 8859565 + Ngly1 protein_coding retained_intron MGP_CASTEiJ_T0098514.1 MGP_CASTEiJ_G0035445.1 mouse_genomes_project 14 113365533 113365656 - n-R5s51 rRNA rRNA MGP_CASTEiJ_T0038350.1 MGP_CASTEiJ_G0020351.1 mouse_genomes_project 14 19992879 20168507 + MGP_CASTEiJ_P0038350 Arhgef3 protein_coding protein_coding MGP_CASTEiJ_T0038351.1 MGP_CASTEiJ_G0020351.1 mouse_genomes_project 14 20122828 20168522 + MGP_CASTEiJ_P0038351 Arhgef3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0011037.1 MGP_CASTEiJ_G0009225.1 mouse_genomes_project 14 24896672 24896970 - Gm22876 misc_RNA misc_RNA MGP_CASTEiJ_T0098340.1 MGP_CASTEiJ_G0035271.1 mouse_genomes_project 14 96292020 96296287 - pseudogene pseudogene MGP_CASTEiJ_T0039972.1 MGP_CASTEiJ_G0020870.1 mouse_genomes_project 14 88850796 88852306 + MGP_CASTEiJ_P0039972 4921530L21Rik protein_coding protein_coding MGP_CASTEiJ_T0002560.1 MGP_CASTEiJ_G0002460.1 mouse_genomes_project 14 44260070 44262258 + MGP_CASTEiJ_P0002560 TR_V_gene TR_V_gene MGP_CASTEiJ_T0011047.1 MGP_CASTEiJ_G0009235.1 mouse_genomes_project 14 52817790 52818046 + Gm27928 misc_RNA misc_RNA MGP_CASTEiJ_T0000869.1 MGP_CASTEiJ_G0000808.1 mouse_genomes_project 14 36941007 36955669 - TEC TEC MGP_CASTEiJ_T0038361.1 MGP_CASTEiJ_G0020356.1 mouse_genomes_project 14 21755406 22046839 - MGP_CASTEiJ_P0038361 Cacna2d3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038362.1 MGP_CASTEiJ_G0020356.1 mouse_genomes_project 14 21755406 22109098 - MGP_CASTEiJ_P0038362 Cacna2d3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038363.1 MGP_CASTEiJ_G0020356.1 mouse_genomes_project 14 21755411 22620298 - MGP_CASTEiJ_P0038363 Cacna2d3 protein_coding protein_coding MGP_CASTEiJ_T0039502.1 MGP_CASTEiJ_G0020700.1 mouse_genomes_project 14 52679395 52704911 - MGP_CASTEiJ_P0039502 Spryd7 protein_coding protein_coding MGP_CASTEiJ_T0039503.1 MGP_CASTEiJ_G0020700.1 mouse_genomes_project 14 52681695 52704783 - MGP_CASTEiJ_P0039503 Spryd7 protein_coding protein_coding MGP_CASTEiJ_T0039504.1 MGP_CASTEiJ_G0020700.1 mouse_genomes_project 14 52682449 52704704 - MGP_CASTEiJ_P0039504 Spryd7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039506.1 MGP_CASTEiJ_G0020702.1 mouse_genomes_project 14 52757353 52761777 + MGP_CASTEiJ_P0039506 Kcnrg protein_coding protein_coding MGP_CASTEiJ_T0039532.1 MGP_CASTEiJ_G0020714.1 mouse_genomes_project 14 54314025 54315650 + MGP_CASTEiJ_P0039532 Defb42 protein_coding protein_coding MGP_CASTEiJ_T0039533.1 MGP_CASTEiJ_G0020714.1 mouse_genomes_project 14 54314063 54326064 + Defb42 protein_coding processed_transcript MGP_CASTEiJ_T0039534.1 MGP_CASTEiJ_G0020714.1 mouse_genomes_project 14 54314128 54315598 + MGP_CASTEiJ_P0039534 Defb42 protein_coding protein_coding MGP_CASTEiJ_T0039535.1 MGP_CASTEiJ_G0020714.1 mouse_genomes_project 14 54315268 54315615 + MGP_CASTEiJ_P0039535 Defb42 protein_coding protein_coding MGP_CASTEiJ_T0039536.1 MGP_CASTEiJ_G0020714.1 mouse_genomes_project 14 54323025 54325009 + Defb42 protein_coding processed_transcript MGP_CASTEiJ_T0039337.1 MGP_CASTEiJ_G0020631.1 mouse_genomes_project 14 46514368 46516170 + MGP_CASTEiJ_P0039337 Ltb4r2 protein_coding protein_coding MGP_CASTEiJ_T0038873.1 MGP_CASTEiJ_G0020501.1 mouse_genomes_project 14 41272557 41273514 - MGP_CASTEiJ_P0038873 protein_coding protein_coding MGP_CASTEiJ_T0012671.1 MGP_CASTEiJ_G0010834.1 mouse_genomes_project 14 102369721 102370171 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039592.1 MGP_CASTEiJ_G0020738.1 mouse_genomes_project 14 56732932 56776247 + MGP_CASTEiJ_P0039592 Zfp395 protein_coding protein_coding MGP_CASTEiJ_T0039593.1 MGP_CASTEiJ_G0020738.1 mouse_genomes_project 14 56754624 56772447 + MGP_CASTEiJ_P0039593 Zfp395 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012649.1 MGP_CASTEiJ_G0010812.1 mouse_genomes_project 14 52752630 52755814 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006557.1 MGP_CASTEiJ_G0005431.1 mouse_genomes_project 14 112858075 112881347 + Gm26791 lincRNA lincRNA MGP_CASTEiJ_T0012646.1 MGP_CASTEiJ_G0010809.1 mouse_genomes_project 14 51265441 51265785 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012603.1 MGP_CASTEiJ_G0010766.1 mouse_genomes_project 14 11091718 11092808 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012631.1 MGP_CASTEiJ_G0010794.1 mouse_genomes_project 14 43746776 43747344 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040130.1 MGP_CASTEiJ_G0020931.1 mouse_genomes_project 14 117267681 117272484 + MGP_CASTEiJ_P0040130 Zic2 protein_coding protein_coding MGP_CASTEiJ_T0040131.1 MGP_CASTEiJ_G0020931.1 mouse_genomes_project 14 117270364 117271315 + Zic2 protein_coding retained_intron MGP_CASTEiJ_T0039826.1 MGP_CASTEiJ_G0020818.1 mouse_genomes_project 14 65126965 65135443 + MGP_CASTEiJ_P0039826 Med4 protein_coding protein_coding MGP_CASTEiJ_T0100619.1 MGP_CASTEiJ_G0037532.1 mouse_genomes_project 14 53737049 53737179 + Gm24625 snoRNA snoRNA MGP_CASTEiJ_T0002438.1 MGP_CASTEiJ_G0002351.1 mouse_genomes_project 14 44810238 44810297 + Traj49 TR_J_gene processed_transcript MGP_CASTEiJ_T0002439.1 MGP_CASTEiJ_G0002351.1 mouse_genomes_project 14 44810238 44810300 + MGP_CASTEiJ_P0002439 Traj49 TR_J_gene TR_J_gene MGP_CASTEiJ_T0002446.1 MGP_CASTEiJ_G0002357.1 mouse_genomes_project 14 44816278 44816335 + MGP_CASTEiJ_P0002446 Traj43 TR_J_gene TR_J_gene MGP_CASTEiJ_T0006500.1 MGP_CASTEiJ_G0005388.1 mouse_genomes_project 14 24962851 24985053 + D830044D21Rik lincRNA lincRNA MGP_CASTEiJ_T0003422.1 MGP_CASTEiJ_G0003120.1 mouse_genomes_project 14 27703492 27704450 + Gm17110 antisense antisense MGP_CASTEiJ_T0039717.1 MGP_CASTEiJ_G0020784.1 mouse_genomes_project 14 61185716 61203614 + MGP_CASTEiJ_P0039717 Tnfrsf10b protein_coding protein_coding MGP_CASTEiJ_T0003454.1 MGP_CASTEiJ_G0003146.1 mouse_genomes_project 14 60773669 60780118 - 1700092C10Rik antisense antisense MGP_CASTEiJ_T0002542.1 MGP_CASTEiJ_G0002445.1 mouse_genomes_project 14 44121605 44122158 + MGP_CASTEiJ_P0002542 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039773.1 MGP_CASTEiJ_G0020807.1 mouse_genomes_project 14 62146386 62152156 - MGP_CASTEiJ_P0039773 Npm2 protein_coding protein_coding MGP_CASTEiJ_T0038020.1 MGP_CASTEiJ_G0020258.1 mouse_genomes_project 14 5762285 6161198 + MGP_CASTEiJ_P0038020 Synpr protein_coding protein_coding MGP_CASTEiJ_T0038021.1 MGP_CASTEiJ_G0020258.1 mouse_genomes_project 14 5967252 6101266 + MGP_CASTEiJ_P0038021 Synpr protein_coding protein_coding MGP_CASTEiJ_T0038022.1 MGP_CASTEiJ_G0020258.1 mouse_genomes_project 14 5967278 6106496 + Synpr protein_coding retained_intron MGP_CASTEiJ_T0038023.1 MGP_CASTEiJ_G0020258.1 mouse_genomes_project 14 5967351 6161198 + MGP_CASTEiJ_P0038023 Synpr protein_coding protein_coding MGP_CASTEiJ_T0038024.1 MGP_CASTEiJ_G0020258.1 mouse_genomes_project 14 5967365 6155931 + Synpr protein_coding retained_intron MGP_CASTEiJ_T0100636.1 MGP_CASTEiJ_G0037549.1 mouse_genomes_project 14 87317805 87317936 - Gm23324 snoRNA snoRNA MGP_CASTEiJ_T0002566.1 MGP_CASTEiJ_G0002466.1 mouse_genomes_project 14 44281849 44282373 + MGP_CASTEiJ_P0002566 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039351.1 MGP_CASTEiJ_G0020639.1 mouse_genomes_project 14 46655799 46658750 - MGP_CASTEiJ_P0039351 Sdr39u1 protein_coding protein_coding MGP_CASTEiJ_T0039352.1 MGP_CASTEiJ_G0020639.1 mouse_genomes_project 14 46656117 46658723 - MGP_CASTEiJ_P0039352 Sdr39u1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038883.1 MGP_CASTEiJ_G0020508.1 mouse_genomes_project 14 41500659 41501598 + MGP_CASTEiJ_P0038883 Olfr736 protein_coding protein_coding MGP_CASTEiJ_T0003412.1 MGP_CASTEiJ_G0003111.1 mouse_genomes_project 14 15849474 15908323 - Gm10248 antisense antisense MGP_CASTEiJ_T0038924.1 MGP_CASTEiJ_G0020529.1 mouse_genomes_project 14 42155207 42158215 + MGP_CASTEiJ_P0038924 Rnase10 protein_coding protein_coding MGP_CASTEiJ_T0038925.1 MGP_CASTEiJ_G0020529.1 mouse_genomes_project 14 42155385 42158215 + MGP_CASTEiJ_P0038925 Rnase10 protein_coding protein_coding MGP_CASTEiJ_T0101733.1 MGP_CASTEiJ_G0038541.1 mouse_genomes_project 14 61010635 61100586 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0012655.1 MGP_CASTEiJ_G0010818.1 mouse_genomes_project 14 66392993 66406822 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099401.1 MGP_CASTEiJ_G0036314.1 mouse_genomes_project 14 85892669 85892829 - Gm23509 snRNA snRNA MGP_CASTEiJ_T0038308.1 MGP_CASTEiJ_G0020340.1 mouse_genomes_project 14 19105890 19233442 - MGP_CASTEiJ_P0038308 Slmap protein_coding protein_coding MGP_CASTEiJ_T0038309.1 MGP_CASTEiJ_G0020340.1 mouse_genomes_project 14 19105895 19171079 - MGP_CASTEiJ_P0038309 Slmap protein_coding protein_coding MGP_CASTEiJ_T0038310.1 MGP_CASTEiJ_G0020340.1 mouse_genomes_project 14 19105896 19157335 - MGP_CASTEiJ_P0038310 Slmap protein_coding protein_coding MGP_CASTEiJ_T0038311.1 MGP_CASTEiJ_G0020340.1 mouse_genomes_project 14 19105897 19232250 - MGP_CASTEiJ_P0038311 Slmap protein_coding protein_coding MGP_CASTEiJ_T0038312.1 MGP_CASTEiJ_G0020340.1 mouse_genomes_project 14 19106122 19232128 - MGP_CASTEiJ_P0038312 Slmap protein_coding protein_coding MGP_CASTEiJ_T0038313.1 MGP_CASTEiJ_G0020340.1 mouse_genomes_project 14 19106122 19232128 - MGP_CASTEiJ_P0038313 Slmap protein_coding protein_coding MGP_CASTEiJ_T0038314.1 MGP_CASTEiJ_G0020340.1 mouse_genomes_project 14 19107018 19233406 - MGP_CASTEiJ_P0038314 Slmap protein_coding protein_coding MGP_CASTEiJ_T0038315.1 MGP_CASTEiJ_G0020340.1 mouse_genomes_project 14 19107453 19157322 - MGP_CASTEiJ_P0038315 Slmap protein_coding protein_coding MGP_CASTEiJ_T0038316.1 MGP_CASTEiJ_G0020340.1 mouse_genomes_project 14 19115157 19136701 - MGP_CASTEiJ_P0038316 Slmap protein_coding protein_coding MGP_CASTEiJ_T0038317.1 MGP_CASTEiJ_G0020340.1 mouse_genomes_project 14 19119945 19136532 - Slmap protein_coding processed_transcript MGP_CASTEiJ_T0038318.1 MGP_CASTEiJ_G0020340.1 mouse_genomes_project 14 19120021 19122780 - Slmap protein_coding retained_intron MGP_CASTEiJ_T0038319.1 MGP_CASTEiJ_G0020340.1 mouse_genomes_project 14 19120244 19136773 - MGP_CASTEiJ_P0038319 Slmap protein_coding protein_coding MGP_CASTEiJ_T0038320.1 MGP_CASTEiJ_G0020340.1 mouse_genomes_project 14 19120948 19131784 - Slmap protein_coding retained_intron MGP_CASTEiJ_T0038321.1 MGP_CASTEiJ_G0020340.1 mouse_genomes_project 14 19129781 19136615 - Slmap protein_coding retained_intron MGP_CASTEiJ_T0038322.1 MGP_CASTEiJ_G0020340.1 mouse_genomes_project 14 19136500 19160856 - MGP_CASTEiJ_P0038322 Slmap protein_coding protein_coding MGP_CASTEiJ_T0038323.1 MGP_CASTEiJ_G0020340.1 mouse_genomes_project 14 19156950 19160847 - Slmap protein_coding retained_intron MGP_CASTEiJ_T0009714.1 MGP_CASTEiJ_G0007902.1 mouse_genomes_project 14 19380200 19380262 - Mir7672 miRNA miRNA MGP_CASTEiJ_T0038926.1 MGP_CASTEiJ_G0020530.1 mouse_genomes_project 14 42185858 42189259 - MGP_CASTEiJ_P0038926 Rnase9 protein_coding protein_coding MGP_CASTEiJ_T0003421.1 MGP_CASTEiJ_G0003119.1 mouse_genomes_project 14 26511082 26514623 - Gm15512 antisense antisense MGP_CASTEiJ_T0002449.1 MGP_CASTEiJ_G0002360.1 mouse_genomes_project 14 44819413 44819474 + MGP_CASTEiJ_P0002449 Traj40 TR_J_gene TR_J_gene MGP_CASTEiJ_T0039818.1 MGP_CASTEiJ_G0020815.1 mouse_genomes_project 14 64779973 64886713 - Rb1 protein_coding processed_transcript MGP_CASTEiJ_T0039819.1 MGP_CASTEiJ_G0020815.1 mouse_genomes_project 14 64784303 64927667 - MGP_CASTEiJ_P0039819 Rb1 protein_coding protein_coding MGP_CASTEiJ_T0039820.1 MGP_CASTEiJ_G0020815.1 mouse_genomes_project 14 64785783 64792078 - Rb1 protein_coding retained_intron MGP_CASTEiJ_T0039822.1 MGP_CASTEiJ_G0020815.1 mouse_genomes_project 14 64827866 64829107 - Rb1 protein_coding processed_transcript MGP_CASTEiJ_T0039823.1 MGP_CASTEiJ_G0020815.1 mouse_genomes_project 14 64858032 64859951 - Rb1 protein_coding retained_intron MGP_CASTEiJ_T0039824.1 MGP_CASTEiJ_G0020815.1 mouse_genomes_project 14 64879318 64927486 - MGP_CASTEiJ_P0039824 Rb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0016680.1 MGP_CASTEiJ_G0014596.1 mouse_genomes_project 14 110173491 110267012 - Gm20713 processed_transcript processed_transcript MGP_CASTEiJ_T0040081.1 MGP_CASTEiJ_G0020911.1 mouse_genomes_project 14 113427066 113475714 - MGP_CASTEiJ_P0040081 Dzip1 protein_coding protein_coding MGP_CASTEiJ_T0040082.1 MGP_CASTEiJ_G0020911.1 mouse_genomes_project 14 113427654 113477862 - MGP_CASTEiJ_P0040082 Dzip1 protein_coding protein_coding MGP_CASTEiJ_T0040083.1 MGP_CASTEiJ_G0020911.1 mouse_genomes_project 14 113441372 113475469 - MGP_CASTEiJ_P0040083 Dzip1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038640.1 MGP_CASTEiJ_G0020421.1 mouse_genomes_project 14 27131579 27141903 + MGP_CASTEiJ_P0038640 Rbp3 protein_coding protein_coding MGP_CASTEiJ_T0000877.1 MGP_CASTEiJ_G0000816.1 mouse_genomes_project 14 52829722 52833815 - TEC TEC MGP_CASTEiJ_T0038133.1 MGP_CASTEiJ_G0020298.1 mouse_genomes_project 14 13176041 13224567 - MGP_CASTEiJ_P0038133 Ppp3cb protein_coding protein_coding MGP_CASTEiJ_T0038134.1 MGP_CASTEiJ_G0020298.1 mouse_genomes_project 14 13176545 13224541 - MGP_CASTEiJ_P0038134 Ppp3cb protein_coding protein_coding MGP_CASTEiJ_T0038135.1 MGP_CASTEiJ_G0020298.1 mouse_genomes_project 14 13176707 13224506 - MGP_CASTEiJ_P0038135 Ppp3cb protein_coding protein_coding MGP_CASTEiJ_T0038136.1 MGP_CASTEiJ_G0020298.1 mouse_genomes_project 14 13178229 13180451 - Ppp3cb protein_coding retained_intron MGP_CASTEiJ_T0038137.1 MGP_CASTEiJ_G0020298.1 mouse_genomes_project 14 13184287 13224434 - MGP_CASTEiJ_P0038137 Ppp3cb protein_coding protein_coding MGP_CASTEiJ_T0038138.1 MGP_CASTEiJ_G0020298.1 mouse_genomes_project 14 13186065 13192544 - Ppp3cb protein_coding retained_intron MGP_CASTEiJ_T0038139.1 MGP_CASTEiJ_G0020298.1 mouse_genomes_project 14 13191969 13197277 - Ppp3cb protein_coding retained_intron MGP_CASTEiJ_T0038140.1 MGP_CASTEiJ_G0020298.1 mouse_genomes_project 14 13197163 13200595 - Ppp3cb protein_coding retained_intron MGP_CASTEiJ_T0098836.1 MGP_CASTEiJ_G0035763.1 mouse_genomes_project 14 37895858 37901449 + Gm15562 sense_intronic sense_intronic MGP_CASTEiJ_T0038773.1 MGP_CASTEiJ_G0020476.1 mouse_genomes_project 14 37808346 38041188 + MGP_CASTEiJ_P0038773 Samd4 protein_coding protein_coding MGP_CASTEiJ_T0038774.1 MGP_CASTEiJ_G0020476.1 mouse_genomes_project 14 37808457 38044614 + MGP_CASTEiJ_P0038774 Samd4 protein_coding protein_coding MGP_CASTEiJ_T0038775.1 MGP_CASTEiJ_G0020476.1 mouse_genomes_project 14 37808998 37811209 + Samd4 protein_coding processed_transcript MGP_CASTEiJ_T0038776.1 MGP_CASTEiJ_G0020476.1 mouse_genomes_project 14 37810736 38044608 + MGP_CASTEiJ_P0038776 Samd4 protein_coding protein_coding MGP_CASTEiJ_T0038777.1 MGP_CASTEiJ_G0020476.1 mouse_genomes_project 14 37940391 37942380 + Samd4 protein_coding processed_transcript MGP_CASTEiJ_T0038778.1 MGP_CASTEiJ_G0020476.1 mouse_genomes_project 14 37950194 38042335 + MGP_CASTEiJ_P0038778 Samd4 protein_coding protein_coding MGP_CASTEiJ_T0038779.1 MGP_CASTEiJ_G0020476.1 mouse_genomes_project 14 38025195 38027164 + Samd4 protein_coding processed_transcript MGP_CASTEiJ_T0099406.1 MGP_CASTEiJ_G0036319.1 mouse_genomes_project 14 92515433 92515589 - Gm25130 snRNA snRNA MGP_CASTEiJ_T0102074.1 MGP_CASTEiJ_G0038799.1 mouse_genomes_project 14 11705200 11766893 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0016658.1 MGP_CASTEiJ_G0014586.1 mouse_genomes_project 14 58841824 58852798 - 1700120O09Rik processed_transcript processed_transcript MGP_CASTEiJ_T0039837.1 MGP_CASTEiJ_G0020822.1 mouse_genomes_project 14 66389343 66407861 + MGP_CASTEiJ_P0039837 Esd protein_coding protein_coding MGP_CASTEiJ_T0039838.1 MGP_CASTEiJ_G0020822.1 mouse_genomes_project 14 66389365 66399651 + Esd protein_coding retained_intron MGP_CASTEiJ_T0039839.1 MGP_CASTEiJ_G0020822.1 mouse_genomes_project 14 66389367 66396503 + Esd protein_coding processed_transcript MGP_CASTEiJ_T0039840.1 MGP_CASTEiJ_G0020822.1 mouse_genomes_project 14 66389403 66402647 + MGP_CASTEiJ_P0039840 Esd protein_coding protein_coding MGP_CASTEiJ_T0039841.1 MGP_CASTEiJ_G0020822.1 mouse_genomes_project 14 66389430 66406947 + MGP_CASTEiJ_P0039841 Esd protein_coding protein_coding MGP_CASTEiJ_T0039842.1 MGP_CASTEiJ_G0020822.1 mouse_genomes_project 14 66395488 66400604 + Esd protein_coding retained_intron MGP_CASTEiJ_T0039843.1 MGP_CASTEiJ_G0020822.1 mouse_genomes_project 14 66395551 66406854 + MGP_CASTEiJ_P0039843 Esd protein_coding protein_coding MGP_CASTEiJ_T0002475.1 MGP_CASTEiJ_G0002386.1 mouse_genomes_project 14 44848721 44848779 + MGP_CASTEiJ_P0002475 Traj12 TR_J_gene TR_J_gene MGP_CASTEiJ_T0039546.1 MGP_CASTEiJ_G0020720.1 mouse_genomes_project 14 54726988 54765358 + MGP_CASTEiJ_P0039546 Fam167a protein_coding protein_coding MGP_CASTEiJ_T0039547.1 MGP_CASTEiJ_G0020720.1 mouse_genomes_project 14 54727003 54734053 + Fam167a protein_coding retained_intron MGP_CASTEiJ_T0012673.1 MGP_CASTEiJ_G0010836.1 mouse_genomes_project 14 112665746 112666224 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039362.1 MGP_CASTEiJ_G0020647.1 mouse_genomes_project 14 46933562 46935787 - MGP_CASTEiJ_P0039362 protein_coding protein_coding MGP_CASTEiJ_T0016689.1 MGP_CASTEiJ_G0014601.1 mouse_genomes_project 14 117695606 117710546 + 4930594M22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016690.1 MGP_CASTEiJ_G0014601.1 mouse_genomes_project 14 117695644 117712316 + 4930594M22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016691.1 MGP_CASTEiJ_G0014601.1 mouse_genomes_project 14 117695652 117720368 + 4930594M22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0011039.1 MGP_CASTEiJ_G0009227.1 mouse_genomes_project 14 28820106 28820274 + Gm27617 misc_RNA misc_RNA MGP_CASTEiJ_T0003429.1 MGP_CASTEiJ_G0003127.1 mouse_genomes_project 14 44568570 44595203 - antisense antisense MGP_CASTEiJ_T0012672.1 MGP_CASTEiJ_G0010835.1 mouse_genomes_project 14 107796288 107796730 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000871.1 MGP_CASTEiJ_G0000810.1 mouse_genomes_project 14 43487345 43492653 + TEC TEC MGP_CASTEiJ_T0038708.1 MGP_CASTEiJ_G0020451.1 mouse_genomes_project 14 34184113 34267697 - MGP_CASTEiJ_P0038708 Sh2d4b protein_coding protein_coding MGP_CASTEiJ_T0038829.1 MGP_CASTEiJ_G0020486.1 mouse_genomes_project 14 39143678 39293936 + MGP_CASTEiJ_P0038829 Peli2 protein_coding protein_coding MGP_CASTEiJ_T0039027.1 MGP_CASTEiJ_G0020554.1 mouse_genomes_project 14 43490184 43507693 - MGP_CASTEiJ_P0039027 Rab2b protein_coding protein_coding MGP_CASTEiJ_T0039028.1 MGP_CASTEiJ_G0020554.1 mouse_genomes_project 14 43490191 43507446 - MGP_CASTEiJ_P0039028 Rab2b protein_coding protein_coding MGP_CASTEiJ_T0039029.1 MGP_CASTEiJ_G0020554.1 mouse_genomes_project 14 43490194 43497531 - Rab2b protein_coding retained_intron MGP_CASTEiJ_T0039030.1 MGP_CASTEiJ_G0020554.1 mouse_genomes_project 14 43490196 43507487 - MGP_CASTEiJ_P0039030 Rab2b protein_coding protein_coding MGP_CASTEiJ_T0039031.1 MGP_CASTEiJ_G0020554.1 mouse_genomes_project 14 43492135 43506822 - Rab2b protein_coding processed_transcript MGP_CASTEiJ_T0039032.1 MGP_CASTEiJ_G0020554.1 mouse_genomes_project 14 43492135 43507389 - MGP_CASTEiJ_P0039032 Rab2b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039033.1 MGP_CASTEiJ_G0020554.1 mouse_genomes_project 14 43492135 43507389 - MGP_CASTEiJ_P0039033 Rab2b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039034.1 MGP_CASTEiJ_G0020554.1 mouse_genomes_project 14 43493179 43503621 - MGP_CASTEiJ_P0039034 Rab2b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0099381.1 MGP_CASTEiJ_G0036294.1 mouse_genomes_project 14 39840058 39840163 - Gm22699 snRNA snRNA MGP_CASTEiJ_T0012597.1 MGP_CASTEiJ_G0010760.1 mouse_genomes_project 14 101081 101903 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0038638.1 MGP_CASTEiJ_G0020419.1 mouse_genomes_project 14 27098938 27111238 + MGP_CASTEiJ_P0038638 Gdf10 protein_coding protein_coding MGP_CASTEiJ_T0002414.1 MGP_CASTEiJ_G0002331.1 mouse_genomes_project 14 44783356 44790463 + MGP_CASTEiJ_P0002414 Trdc TR_C_gene TR_C_gene MGP_CASTEiJ_T0038900.1 MGP_CASTEiJ_G0020523.1 mouse_genomes_project 14 42025353 42027220 - MGP_CASTEiJ_P0038900 Klhl33 protein_coding protein_coding MGP_CASTEiJ_T0039759.1 MGP_CASTEiJ_G0020798.1 mouse_genomes_project 14 61964464 62010521 - MGP_CASTEiJ_P0039759 Bmp1 protein_coding protein_coding MGP_CASTEiJ_T0016661.1 MGP_CASTEiJ_G0014589.1 mouse_genomes_project 14 64770382 64783545 - Gm17233 processed_transcript processed_transcript MGP_CASTEiJ_T0002550.1 MGP_CASTEiJ_G0002452.1 mouse_genomes_project 14 44169154 44169792 + MGP_CASTEiJ_P0002550 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002552.1 MGP_CASTEiJ_G0002452.1 mouse_genomes_project 14 44169220 44169792 + MGP_CASTEiJ_P0002552 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039537.1 MGP_CASTEiJ_G0020715.1 mouse_genomes_project 14 54395468 54418617 + MGP_CASTEiJ_P0039537 Ctsb protein_coding protein_coding MGP_CASTEiJ_T0039487.1 MGP_CASTEiJ_G0020694.1 mouse_genomes_project 14 52083608 52172721 - MGP_CASTEiJ_P0039487 Tnfrsf19 protein_coding protein_coding MGP_CASTEiJ_T0039488.1 MGP_CASTEiJ_G0020694.1 mouse_genomes_project 14 52083608 52163652 - MGP_CASTEiJ_P0039488 Tnfrsf19 protein_coding protein_coding MGP_CASTEiJ_T0102078.1 MGP_CASTEiJ_G0038803.1 mouse_genomes_project 14 42251267 42251702 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0002572.1 MGP_CASTEiJ_G0002472.1 mouse_genomes_project 14 44345826 44346403 + MGP_CASTEiJ_P0002572 TR_V_gene TR_V_gene MGP_CASTEiJ_T0038553.1 MGP_CASTEiJ_G0020397.1 mouse_genomes_project 14 25161008 25167077 + MGP_CASTEiJ_P0038553 Oxnad1 protein_coding protein_coding MGP_CASTEiJ_T0038554.1 MGP_CASTEiJ_G0020397.1 mouse_genomes_project 14 25161010 25171943 + MGP_CASTEiJ_P0038554 Oxnad1 protein_coding protein_coding MGP_CASTEiJ_T0038555.1 MGP_CASTEiJ_G0020397.1 mouse_genomes_project 14 25161047 25178372 + MGP_CASTEiJ_P0038555 Oxnad1 protein_coding protein_coding MGP_CASTEiJ_T0038556.1 MGP_CASTEiJ_G0020397.1 mouse_genomes_project 14 25161421 25175019 + MGP_CASTEiJ_P0038556 Oxnad1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038557.1 MGP_CASTEiJ_G0020397.1 mouse_genomes_project 14 25161445 25178372 + MGP_CASTEiJ_P0038557 Oxnad1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038558.1 MGP_CASTEiJ_G0020397.1 mouse_genomes_project 14 25161460 25174888 + MGP_CASTEiJ_P0038558 Oxnad1 protein_coding protein_coding MGP_CASTEiJ_T0038559.1 MGP_CASTEiJ_G0020397.1 mouse_genomes_project 14 25161468 25175431 + Oxnad1 protein_coding retained_intron MGP_CASTEiJ_T0038560.1 MGP_CASTEiJ_G0020397.1 mouse_genomes_project 14 25161468 25172023 + MGP_CASTEiJ_P0038560 Oxnad1 protein_coding protein_coding MGP_CASTEiJ_T0038561.1 MGP_CASTEiJ_G0020397.1 mouse_genomes_project 14 25161511 25171983 + MGP_CASTEiJ_P0038561 Oxnad1 protein_coding protein_coding MGP_CASTEiJ_T0038562.1 MGP_CASTEiJ_G0020397.1 mouse_genomes_project 14 25170794 25177825 + MGP_CASTEiJ_P0038562 Oxnad1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038563.1 MGP_CASTEiJ_G0020397.1 mouse_genomes_project 14 25170857 25178022 + MGP_CASTEiJ_P0038563 Oxnad1 protein_coding protein_coding MGP_CASTEiJ_T0038564.1 MGP_CASTEiJ_G0020397.1 mouse_genomes_project 14 25176198 25177452 + Oxnad1 protein_coding retained_intron MGP_CASTEiJ_T0002466.1 MGP_CASTEiJ_G0002377.1 mouse_genomes_project 14 44839630 44839690 + MGP_CASTEiJ_P0002466 Traj22 TR_J_gene TR_J_gene MGP_CASTEiJ_T0000868.1 MGP_CASTEiJ_G0000807.1 mouse_genomes_project 14 14764540 14768210 + TEC TEC MGP_CASTEiJ_T0038380.1 MGP_CASTEiJ_G0020363.1 mouse_genomes_project 14 23426598 23475739 + MGP_CASTEiJ_P0038380 Dcp1a protein_coding protein_coding MGP_CASTEiJ_T0016671.1 MGP_CASTEiJ_G0014592.1 mouse_genomes_project 14 93413773 93451196 + 4930517O19Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016672.1 MGP_CASTEiJ_G0014592.1 mouse_genomes_project 14 93413820 93450718 + 4930517O19Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016673.1 MGP_CASTEiJ_G0014592.1 mouse_genomes_project 14 93413820 93452131 + 4930517O19Rik processed_transcript processed_transcript MGP_CASTEiJ_T0039303.1 MGP_CASTEiJ_G0020620.1 mouse_genomes_project 14 46381322 46388613 - MGP_CASTEiJ_P0039303 Tm9sf1 protein_coding protein_coding MGP_CASTEiJ_T0039304.1 MGP_CASTEiJ_G0020620.1 mouse_genomes_project 14 46381322 46389168 - MGP_CASTEiJ_P0039304 Tm9sf1 protein_coding protein_coding MGP_CASTEiJ_T0039305.1 MGP_CASTEiJ_G0020620.1 mouse_genomes_project 14 46381325 46388678 - MGP_CASTEiJ_P0039305 Tm9sf1 protein_coding protein_coding MGP_CASTEiJ_T0039306.1 MGP_CASTEiJ_G0020620.1 mouse_genomes_project 14 46381368 46388716 - MGP_CASTEiJ_P0039306 Tm9sf1 protein_coding protein_coding MGP_CASTEiJ_T0039307.1 MGP_CASTEiJ_G0020620.1 mouse_genomes_project 14 46381372 46388723 - MGP_CASTEiJ_P0039307 Tm9sf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039308.1 MGP_CASTEiJ_G0020620.1 mouse_genomes_project 14 46381416 46388702 - MGP_CASTEiJ_P0039308 Tm9sf1 protein_coding protein_coding MGP_CASTEiJ_T0039309.1 MGP_CASTEiJ_G0020620.1 mouse_genomes_project 14 46383185 46388885 - MGP_CASTEiJ_P0039309 Tm9sf1 protein_coding protein_coding MGP_CASTEiJ_T0039310.1 MGP_CASTEiJ_G0020620.1 mouse_genomes_project 14 46383653 46386422 - Tm9sf1 protein_coding processed_transcript MGP_CASTEiJ_T0039311.1 MGP_CASTEiJ_G0020620.1 mouse_genomes_project 14 46385454 46388733 - Tm9sf1 protein_coding retained_intron MGP_CASTEiJ_T0039312.1 MGP_CASTEiJ_G0020620.1 mouse_genomes_project 14 46385742 46388922 - Tm9sf1 protein_coding processed_transcript MGP_CASTEiJ_T0039313.1 MGP_CASTEiJ_G0020620.1 mouse_genomes_project 14 46385801 46386961 - Tm9sf1 protein_coding retained_intron MGP_CASTEiJ_T0039314.1 MGP_CASTEiJ_G0020620.1 mouse_genomes_project 14 46386779 46389133 - MGP_CASTEiJ_P0039314 Tm9sf1 protein_coding protein_coding MGP_CASTEiJ_T0039315.1 MGP_CASTEiJ_G0020620.1 mouse_genomes_project 14 46387945 46388695 - MGP_CASTEiJ_P0039315 Tm9sf1 protein_coding protein_coding MGP_CASTEiJ_T0038890.1 MGP_CASTEiJ_G0020515.1 mouse_genomes_project 14 41753145 41754318 + MGP_CASTEiJ_P0038890 Olfr745 protein_coding protein_coding MGP_CASTEiJ_T0039087.1 MGP_CASTEiJ_G0020568.1 mouse_genomes_project 14 45001555 45005195 + Oxa1l protein_coding retained_intron MGP_CASTEiJ_T0039088.1 MGP_CASTEiJ_G0020568.1 mouse_genomes_project 14 45001555 45018721 + MGP_CASTEiJ_P0039088 Oxa1l protein_coding protein_coding MGP_CASTEiJ_T0039089.1 MGP_CASTEiJ_G0020568.1 mouse_genomes_project 14 45001759 45016085 + Oxa1l protein_coding retained_intron MGP_CASTEiJ_T0006543.1 MGP_CASTEiJ_G0005420.1 mouse_genomes_project 14 61148217 61164508 + 4930480K23Rik lincRNA lincRNA MGP_CASTEiJ_T0006544.1 MGP_CASTEiJ_G0005420.1 mouse_genomes_project 14 61148267 61185339 + 4930480K23Rik lincRNA lincRNA MGP_CASTEiJ_T0039931.1 MGP_CASTEiJ_G0020855.1 mouse_genomes_project 14 71346929 71372822 + MGP_CASTEiJ_P0039931 Mtrf1 protein_coding protein_coding MGP_CASTEiJ_T0100597.1 MGP_CASTEiJ_G0037510.1 mouse_genomes_project 14 4753536 4755936 - Gm24578 snoRNA snoRNA MGP_CASTEiJ_T0039361.1 MGP_CASTEiJ_G0020646.1 mouse_genomes_project 14 46903199 46905826 - MGP_CASTEiJ_P0039361 Ctsg protein_coding protein_coding MGP_CASTEiJ_T0006537.1 MGP_CASTEiJ_G0005417.1 mouse_genomes_project 14 54078892 54080192 - Gm26536 lincRNA lincRNA MGP_CASTEiJ_T0038270.1 MGP_CASTEiJ_G0020327.1 mouse_genomes_project 14 18624528 18676515 - MGP_CASTEiJ_P0038270 Zcchc24 protein_coding protein_coding MGP_CASTEiJ_T0038271.1 MGP_CASTEiJ_G0020327.1 mouse_genomes_project 14 18624530 18632739 - Zcchc24 protein_coding retained_intron MGP_CASTEiJ_T0038993.1 MGP_CASTEiJ_G0020550.1 mouse_genomes_project 14 43296961 43326927 - MGP_CASTEiJ_P0038993 Hnrnpc protein_coding unknown_likely_coding MGP_CASTEiJ_T0038994.1 MGP_CASTEiJ_G0020550.1 mouse_genomes_project 14 43296965 43326847 - MGP_CASTEiJ_P0038994 Hnrnpc protein_coding protein_coding MGP_CASTEiJ_T0040001.1 MGP_CASTEiJ_G0020883.1 mouse_genomes_project 14 95003950 95004385 - MGP_CASTEiJ_P0040001 Gm9922 protein_coding protein_coding MGP_CASTEiJ_T0039371.1 MGP_CASTEiJ_G0020656.1 mouse_genomes_project 14 47368789 47422490 - MGP_CASTEiJ_P0039371 Cenpj protein_coding unknown_likely_coding MGP_CASTEiJ_T0039372.1 MGP_CASTEiJ_G0020656.1 mouse_genomes_project 14 47373989 47422502 - MGP_CASTEiJ_P0039372 Cenpj protein_coding protein_coding MGP_CASTEiJ_T0039373.1 MGP_CASTEiJ_G0020656.1 mouse_genomes_project 14 47374011 47414728 - MGP_CASTEiJ_P0039373 Cenpj protein_coding unknown_likely_coding MGP_CASTEiJ_T0038284.1 MGP_CASTEiJ_G0020332.1 mouse_genomes_project 14 18869478 18873110 - MGP_CASTEiJ_P0038284 protein_coding protein_coding MGP_CASTEiJ_T0038287.1 MGP_CASTEiJ_G0020332.1 mouse_genomes_project 14 18869648 18872688 - MGP_CASTEiJ_P0038287 protein_coding protein_coding MGP_CASTEiJ_T0038288.1 MGP_CASTEiJ_G0020332.1 mouse_genomes_project 14 18870228 18873081 - MGP_CASTEiJ_P0038288 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038289.1 MGP_CASTEiJ_G0020332.1 mouse_genomes_project 14 18870235 18871267 - protein_coding retained_intron MGP_CASTEiJ_T0039520.1 MGP_CASTEiJ_G0020707.1 mouse_genomes_project 14 53896420 53926904 + MGP_CASTEiJ_P0039520 Serpine3 protein_coding protein_coding MGP_CASTEiJ_T0038764.1 MGP_CASTEiJ_G0020473.1 mouse_genomes_project 14 37697549 37710256 - MGP_CASTEiJ_P0038764 Cnih1 protein_coding protein_coding MGP_CASTEiJ_T0038765.1 MGP_CASTEiJ_G0020473.1 mouse_genomes_project 14 37697549 37710256 - MGP_CASTEiJ_P0038765 Cnih1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038961.1 MGP_CASTEiJ_G0020544.1 mouse_genomes_project 14 43132107 43134379 + MGP_CASTEiJ_P0038961 Tppp2 protein_coding protein_coding MGP_CASTEiJ_T0038962.1 MGP_CASTEiJ_G0020544.1 mouse_genomes_project 14 43132444 43134379 + MGP_CASTEiJ_P0038962 Tppp2 protein_coding protein_coding MGP_CASTEiJ_T0038173.1 MGP_CASTEiJ_G0020312.1 mouse_genomes_project 14 14226788 14264518 + MGP_CASTEiJ_P0038173 Kat6b protein_coding protein_coding MGP_CASTEiJ_T0038174.1 MGP_CASTEiJ_G0020312.1 mouse_genomes_project 14 14226813 14371374 + Kat6b protein_coding processed_transcript MGP_CASTEiJ_T0038175.1 MGP_CASTEiJ_G0020312.1 mouse_genomes_project 14 14247318 14421367 + MGP_CASTEiJ_P0038175 Kat6b protein_coding protein_coding MGP_CASTEiJ_T0038176.1 MGP_CASTEiJ_G0020312.1 mouse_genomes_project 14 14247333 14421775 + MGP_CASTEiJ_P0038176 Kat6b protein_coding protein_coding MGP_CASTEiJ_T0038177.1 MGP_CASTEiJ_G0020312.1 mouse_genomes_project 14 14247402 14266050 + Kat6b protein_coding retained_intron MGP_CASTEiJ_T0038178.1 MGP_CASTEiJ_G0020312.1 mouse_genomes_project 14 14247410 14421684 + MGP_CASTEiJ_P0038178 Kat6b protein_coding unknown_likely_coding MGP_CASTEiJ_T0038179.1 MGP_CASTEiJ_G0020312.1 mouse_genomes_project 14 14247416 14421430 + MGP_CASTEiJ_P0038179 Kat6b protein_coding protein_coding MGP_CASTEiJ_T0038180.1 MGP_CASTEiJ_G0020312.1 mouse_genomes_project 14 14248400 14370824 + Kat6b protein_coding retained_intron MGP_CASTEiJ_T0038181.1 MGP_CASTEiJ_G0020312.1 mouse_genomes_project 14 14248432 14267710 + Kat6b protein_coding retained_intron MGP_CASTEiJ_T0038182.1 MGP_CASTEiJ_G0020312.1 mouse_genomes_project 14 14248436 14370028 + Kat6b protein_coding retained_intron MGP_CASTEiJ_T0038183.1 MGP_CASTEiJ_G0020312.1 mouse_genomes_project 14 14248439 14421775 + MGP_CASTEiJ_P0038183 Kat6b protein_coding protein_coding MGP_CASTEiJ_T0038184.1 MGP_CASTEiJ_G0020312.1 mouse_genomes_project 14 14264157 14420502 + MGP_CASTEiJ_P0038184 Kat6b protein_coding protein_coding MGP_CASTEiJ_T0038185.1 MGP_CASTEiJ_G0020312.1 mouse_genomes_project 14 14371357 14374978 + Kat6b protein_coding retained_intron MGP_CASTEiJ_T0038186.1 MGP_CASTEiJ_G0020312.1 mouse_genomes_project 14 14371939 14383959 + Kat6b protein_coding retained_intron MGP_CASTEiJ_T0039476.1 MGP_CASTEiJ_G0020691.1 mouse_genomes_project 14 51746236 51806443 + MGP_CASTEiJ_P0039476 Spata13 protein_coding protein_coding MGP_CASTEiJ_T0039477.1 MGP_CASTEiJ_G0020691.1 mouse_genomes_project 14 51746969 51806484 + MGP_CASTEiJ_P0039477 Spata13 protein_coding protein_coding MGP_CASTEiJ_T0039478.1 MGP_CASTEiJ_G0020691.1 mouse_genomes_project 14 51746990 51805969 + Spata13 protein_coding processed_transcript MGP_CASTEiJ_T0039479.1 MGP_CASTEiJ_G0020691.1 mouse_genomes_project 14 51805896 51888142 + MGP_CASTEiJ_P0039479 Spata13 protein_coding protein_coding MGP_CASTEiJ_T0039480.1 MGP_CASTEiJ_G0020691.1 mouse_genomes_project 14 51807050 51824606 + MGP_CASTEiJ_P0039480 Spata13 protein_coding protein_coding MGP_CASTEiJ_T0039481.1 MGP_CASTEiJ_G0020691.1 mouse_genomes_project 14 51817948 51821869 + Spata13 protein_coding processed_transcript MGP_CASTEiJ_T0039482.1 MGP_CASTEiJ_G0020691.1 mouse_genomes_project 14 51821727 51871788 + MGP_CASTEiJ_P0039482 Spata13 protein_coding protein_coding MGP_CASTEiJ_T0039483.1 MGP_CASTEiJ_G0020691.1 mouse_genomes_project 14 51852229 51888131 + MGP_CASTEiJ_P0039483 Spata13 protein_coding protein_coding MGP_CASTEiJ_T0039484.1 MGP_CASTEiJ_G0020691.1 mouse_genomes_project 14 51872848 51886236 + Spata13 protein_coding retained_intron MGP_CASTEiJ_T0039387.1 MGP_CASTEiJ_G0020662.1 mouse_genomes_project 14 47931692 47954084 - MGP_CASTEiJ_P0039387 Gja3 protein_coding protein_coding MGP_CASTEiJ_T0012644.1 MGP_CASTEiJ_G0010807.1 mouse_genomes_project 14 49084589 49084947 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009731.1 MGP_CASTEiJ_G0007919.1 mouse_genomes_project 14 52782124 52782208 - Mir15a miRNA miRNA MGP_CASTEiJ_T0038641.1 MGP_CASTEiJ_G0020422.1 mouse_genomes_project 14 27144764 27157278 - MGP_CASTEiJ_P0038641 Zfp488 protein_coding protein_coding MGP_CASTEiJ_T0100641.1 MGP_CASTEiJ_G0037554.1 mouse_genomes_project 14 91351075 91351156 - Gm26006 snoRNA snoRNA MGP_CASTEiJ_T0002565.1 MGP_CASTEiJ_G0002465.1 mouse_genomes_project 14 44281771 44282373 + MGP_CASTEiJ_P0002565 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039320.1 MGP_CASTEiJ_G0020623.1 mouse_genomes_project 14 46412398 46422057 - MGP_CASTEiJ_P0039320 Nedd8 protein_coding protein_coding MGP_CASTEiJ_T0039321.1 MGP_CASTEiJ_G0020623.1 mouse_genomes_project 14 46412400 46422090 - MGP_CASTEiJ_P0039321 Nedd8 protein_coding protein_coding MGP_CASTEiJ_T0039846.1 MGP_CASTEiJ_G0020824.1 mouse_genomes_project 14 66680484 66721738 + MGP_CASTEiJ_P0039846 5031414D18Rik protein_coding protein_coding MGP_CASTEiJ_T0038739.1 MGP_CASTEiJ_G0020466.1 mouse_genomes_project 14 36243943 36255448 + MGP_CASTEiJ_P0038739 protein_coding protein_coding MGP_CASTEiJ_T0039711.1 MGP_CASTEiJ_G0020782.1 mouse_genomes_project 14 61107531 61117689 - MGP_CASTEiJ_P0039711 R3hcc1 protein_coding protein_coding MGP_CASTEiJ_T0039712.1 MGP_CASTEiJ_G0020782.1 mouse_genomes_project 14 61107532 61117598 - MGP_CASTEiJ_P0039712 R3hcc1 protein_coding protein_coding MGP_CASTEiJ_T0039713.1 MGP_CASTEiJ_G0020782.1 mouse_genomes_project 14 61108555 61110245 - R3hcc1 protein_coding retained_intron MGP_CASTEiJ_T0039714.1 MGP_CASTEiJ_G0020782.1 mouse_genomes_project 14 61113717 61115419 - R3hcc1 protein_coding retained_intron MGP_CASTEiJ_T0039715.1 MGP_CASTEiJ_G0020782.1 mouse_genomes_project 14 61115730 61117658 - R3hcc1 protein_coding processed_transcript MGP_CASTEiJ_T0038162.1 MGP_CASTEiJ_G0020310.1 mouse_genomes_project 14 13744654 13769257 - MGP_CASTEiJ_P0038162 Ap3m1 protein_coding protein_coding MGP_CASTEiJ_T0038163.1 MGP_CASTEiJ_G0020310.1 mouse_genomes_project 14 13744671 13747785 - Ap3m1 protein_coding processed_transcript MGP_CASTEiJ_T0038164.1 MGP_CASTEiJ_G0020310.1 mouse_genomes_project 14 13744746 13747999 - Ap3m1 protein_coding processed_transcript MGP_CASTEiJ_T0038165.1 MGP_CASTEiJ_G0020310.1 mouse_genomes_project 14 13750297 13769029 - MGP_CASTEiJ_P0038165 Ap3m1 protein_coding protein_coding MGP_CASTEiJ_T0038166.1 MGP_CASTEiJ_G0020310.1 mouse_genomes_project 14 13753935 13768994 - MGP_CASTEiJ_P0038166 Ap3m1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038167.1 MGP_CASTEiJ_G0020310.1 mouse_genomes_project 14 13753979 13769270 - Ap3m1 protein_coding processed_transcript MGP_CASTEiJ_T0038168.1 MGP_CASTEiJ_G0020310.1 mouse_genomes_project 14 13757783 13768884 - Ap3m1 protein_coding processed_transcript MGP_CASTEiJ_T0038169.1 MGP_CASTEiJ_G0020310.1 mouse_genomes_project 14 13757810 13769315 - MGP_CASTEiJ_P0038169 Ap3m1 protein_coding protein_coding MGP_CASTEiJ_T0038170.1 MGP_CASTEiJ_G0020310.1 mouse_genomes_project 14 13761441 13768927 - MGP_CASTEiJ_P0038170 Ap3m1 protein_coding protein_coding MGP_CASTEiJ_T0039560.1 MGP_CASTEiJ_G0020724.1 mouse_genomes_project 14 55169023 55228257 + MGP_CASTEiJ_P0039560 Pinx1 protein_coding protein_coding MGP_CASTEiJ_T0039228.1 MGP_CASTEiJ_G0020608.1 mouse_genomes_project 14 46255598 46262249 - MGP_CASTEiJ_P0039228 Nrl protein_coding protein_coding MGP_CASTEiJ_T0039229.1 MGP_CASTEiJ_G0020608.1 mouse_genomes_project 14 46256144 46263023 - MGP_CASTEiJ_P0039229 Nrl protein_coding protein_coding MGP_CASTEiJ_T0039230.1 MGP_CASTEiJ_G0020608.1 mouse_genomes_project 14 46256144 46263039 - MGP_CASTEiJ_P0039230 Nrl protein_coding protein_coding MGP_CASTEiJ_T0012615.1 MGP_CASTEiJ_G0010778.1 mouse_genomes_project 14 22081779 22082270 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0038868.1 MGP_CASTEiJ_G0020496.1 mouse_genomes_project 14 41207155 41208257 + MGP_CASTEiJ_P0038868 protein_coding protein_coding MGP_CASTEiJ_T0098837.1 MGP_CASTEiJ_G0035764.1 mouse_genomes_project 14 47589473 47592190 - sense_intronic sense_intronic MGP_CASTEiJ_T0002617.1 MGP_CASTEiJ_G0002507.1 mouse_genomes_project 14 43823356 43823856 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0039691.1 MGP_CASTEiJ_G0020773.1 mouse_genomes_project 14 60780062 60783819 + MGP_CASTEiJ_P0039691 Nkx2-6 protein_coding protein_coding MGP_CASTEiJ_T0038386.1 MGP_CASTEiJ_G0020365.1 mouse_genomes_project 14 23550785 23582184 - MGP_CASTEiJ_P0038386 Prkcd protein_coding protein_coding MGP_CASTEiJ_T0038387.1 MGP_CASTEiJ_G0020365.1 mouse_genomes_project 14 23550793 23582161 - MGP_CASTEiJ_P0038387 Prkcd protein_coding protein_coding MGP_CASTEiJ_T0038388.1 MGP_CASTEiJ_G0020365.1 mouse_genomes_project 14 23550795 23566252 - MGP_CASTEiJ_P0038388 Prkcd protein_coding protein_coding MGP_CASTEiJ_T0038389.1 MGP_CASTEiJ_G0020365.1 mouse_genomes_project 14 23551031 23563772 - MGP_CASTEiJ_P0038389 Prkcd protein_coding protein_coding MGP_CASTEiJ_T0038390.1 MGP_CASTEiJ_G0020365.1 mouse_genomes_project 14 23551090 23555645 - Prkcd protein_coding retained_intron MGP_CASTEiJ_T0038391.1 MGP_CASTEiJ_G0020365.1 mouse_genomes_project 14 23551109 23565246 - MGP_CASTEiJ_P0038391 Prkcd protein_coding unknown_likely_coding MGP_CASTEiJ_T0038392.1 MGP_CASTEiJ_G0020365.1 mouse_genomes_project 14 23553842 23563772 - MGP_CASTEiJ_P0038392 Prkcd protein_coding protein_coding MGP_CASTEiJ_T0038393.1 MGP_CASTEiJ_G0020365.1 mouse_genomes_project 14 23553842 23563772 - MGP_CASTEiJ_P0038393 Prkcd protein_coding protein_coding MGP_CASTEiJ_T0038394.1 MGP_CASTEiJ_G0020365.1 mouse_genomes_project 14 23555699 23582125 - Prkcd protein_coding retained_intron MGP_CASTEiJ_T0038395.1 MGP_CASTEiJ_G0020365.1 mouse_genomes_project 14 23557840 23562158 - Prkcd protein_coding retained_intron MGP_CASTEiJ_T0038396.1 MGP_CASTEiJ_G0020365.1 mouse_genomes_project 14 23557939 23561937 - Prkcd protein_coding retained_intron MGP_CASTEiJ_T0038397.1 MGP_CASTEiJ_G0020365.1 mouse_genomes_project 14 23559697 23563295 - Prkcd protein_coding retained_intron MGP_CASTEiJ_T0099397.1 MGP_CASTEiJ_G0036310.1 mouse_genomes_project 14 74480731 74480901 - Gm22891 snRNA snRNA MGP_CASTEiJ_T0038787.1 MGP_CASTEiJ_G0020480.1 mouse_genomes_project 14 38251725 38276758 + MGP_CASTEiJ_P0038787 Mapk1ip1l protein_coding protein_coding MGP_CASTEiJ_T0039451.1 MGP_CASTEiJ_G0020681.1 mouse_genomes_project 14 50463922 50490480 - MGP_CASTEiJ_P0039451 Phf11c protein_coding protein_coding MGP_CASTEiJ_T0038892.1 MGP_CASTEiJ_G0020517.1 mouse_genomes_project 14 41830122 41831314 + MGP_CASTEiJ_P0038892 Olfr748 protein_coding protein_coding MGP_CASTEiJ_T0002480.1 MGP_CASTEiJ_G0002391.1 mouse_genomes_project 14 44855961 44856023 + MGP_CASTEiJ_P0002480 Traj5 TR_J_gene TR_J_gene MGP_CASTEiJ_T0009726.1 MGP_CASTEiJ_G0007914.1 mouse_genomes_project 14 45675193 45675270 - Mir208b miRNA miRNA MGP_CASTEiJ_T0099374.1 MGP_CASTEiJ_G0036287.1 mouse_genomes_project 14 20270193 20270302 + Gm22485 snRNA snRNA MGP_CASTEiJ_T0003466.1 MGP_CASTEiJ_G0003154.1 mouse_genomes_project 14 71748082 71750918 + Gm9748 antisense antisense MGP_CASTEiJ_T0003467.1 MGP_CASTEiJ_G0003154.1 mouse_genomes_project 14 71748156 71750866 + Gm9748 antisense antisense MGP_CASTEiJ_T0000887.1 MGP_CASTEiJ_G0000826.1 mouse_genomes_project 14 81909305 81909740 + TEC TEC MGP_CASTEiJ_T0099394.1 MGP_CASTEiJ_G0036307.1 mouse_genomes_project 14 61914694 61914797 - Gm24890 snRNA snRNA MGP_CASTEiJ_T0039369.1 MGP_CASTEiJ_G0020654.1 mouse_genomes_project 14 47199447 47223693 + MGP_CASTEiJ_P0039369 Atp12a protein_coding protein_coding MGP_CASTEiJ_T0039389.1 MGP_CASTEiJ_G0020664.1 mouse_genomes_project 14 48018183 48021554 - MGP_CASTEiJ_P0039389 Gm4491 protein_coding protein_coding MGP_CASTEiJ_T0038606.1 MGP_CASTEiJ_G0020413.1 mouse_genomes_project 14 26084304 26325607 - MGP_CASTEiJ_P0038606 Wdfy4 protein_coding protein_coding MGP_CASTEiJ_T0038607.1 MGP_CASTEiJ_G0020413.1 mouse_genomes_project 14 26084327 26325607 - MGP_CASTEiJ_P0038607 Wdfy4 protein_coding protein_coding MGP_CASTEiJ_T0038614.1 MGP_CASTEiJ_G0020413.1 mouse_genomes_project 14 26139123 26302601 - MGP_CASTEiJ_P0038614 Wdfy4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038615.1 MGP_CASTEiJ_G0020413.1 mouse_genomes_project 14 26143373 26148398 - MGP_CASTEiJ_P0038615 Wdfy4 protein_coding protein_coding MGP_CASTEiJ_T0038616.1 MGP_CASTEiJ_G0020413.1 mouse_genomes_project 14 26226471 26330709 - MGP_CASTEiJ_P0038616 Wdfy4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038617.1 MGP_CASTEiJ_G0020413.1 mouse_genomes_project 14 26302406 26326049 - MGP_CASTEiJ_P0038617 Wdfy4 protein_coding protein_coding MGP_CASTEiJ_T0038520.1 MGP_CASTEiJ_G0020390.1 mouse_genomes_project 14 24528670 24543470 + MGP_CASTEiJ_P0038520 Eaf1 protein_coding protein_coding MGP_CASTEiJ_T0009734.1 MGP_CASTEiJ_G0007922.1 mouse_genomes_project 14 55026992 55027071 + Mir598 miRNA miRNA MGP_CASTEiJ_T0100602.1 MGP_CASTEiJ_G0037515.1 mouse_genomes_project 14 24019835 24019915 - Snord69 snoRNA snoRNA MGP_CASTEiJ_T0038648.1 MGP_CASTEiJ_G0020428.1 mouse_genomes_project 14 27382077 27389241 - MGP_CASTEiJ_P0038648 Gprin2 protein_coding protein_coding MGP_CASTEiJ_T0099040.1 MGP_CASTEiJ_G0035957.1 mouse_genomes_project 14 59222193 59224103 - Gm20667 sense_overlapping sense_overlapping MGP_CASTEiJ_T0002507.1 MGP_CASTEiJ_G0002416.1 mouse_genomes_project 14 44861048 44861077 + TR_J_pseudogene TR_J_pseudogene MGP_CASTEiJ_T0038928.1 MGP_CASTEiJ_G0020532.1 mouse_genomes_project 14 42204552 42205097 - MGP_CASTEiJ_P0038928 Rnase12 protein_coding protein_coding MGP_CASTEiJ_T0099407.1 MGP_CASTEiJ_G0036320.1 mouse_genomes_project 14 92947250 92947436 - Gm22970 snRNA snRNA MGP_CASTEiJ_T0040002.1 MGP_CASTEiJ_G0020884.1 mouse_genomes_project 14 95004727 95214147 + MGP_CASTEiJ_P0040002 Lmo7 protein_coding protein_coding MGP_CASTEiJ_T0040003.1 MGP_CASTEiJ_G0020884.1 mouse_genomes_project 14 95104298 95157820 + Lmo7 protein_coding processed_transcript MGP_CASTEiJ_T0040004.1 MGP_CASTEiJ_G0020884.1 mouse_genomes_project 14 95113598 95214913 + MGP_CASTEiJ_P0040004 Lmo7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040005.1 MGP_CASTEiJ_G0020884.1 mouse_genomes_project 14 95115401 95161403 + Lmo7 protein_coding processed_transcript MGP_CASTEiJ_T0040006.1 MGP_CASTEiJ_G0020884.1 mouse_genomes_project 14 95115611 95162821 + Lmo7 protein_coding retained_intron MGP_CASTEiJ_T0040007.1 MGP_CASTEiJ_G0020884.1 mouse_genomes_project 14 95115611 95175542 + MGP_CASTEiJ_P0040007 Lmo7 protein_coding protein_coding MGP_CASTEiJ_T0040008.1 MGP_CASTEiJ_G0020884.1 mouse_genomes_project 14 95115933 95190402 + Lmo7 protein_coding retained_intron MGP_CASTEiJ_T0040009.1 MGP_CASTEiJ_G0020884.1 mouse_genomes_project 14 95146380 95161206 + Lmo7 protein_coding processed_transcript MGP_CASTEiJ_T0040010.1 MGP_CASTEiJ_G0020884.1 mouse_genomes_project 14 95161075 95177572 + Lmo7 protein_coding retained_intron MGP_CASTEiJ_T0040011.1 MGP_CASTEiJ_G0020884.1 mouse_genomes_project 14 95161107 95165190 + Lmo7 protein_coding retained_intron MGP_CASTEiJ_T0040012.1 MGP_CASTEiJ_G0020884.1 mouse_genomes_project 14 95197896 95210168 + Lmo7 protein_coding retained_intron MGP_CASTEiJ_T0040013.1 MGP_CASTEiJ_G0020884.1 mouse_genomes_project 14 95205709 95213366 + Lmo7 protein_coding processed_transcript MGP_CASTEiJ_T0040014.1 MGP_CASTEiJ_G0020884.1 mouse_genomes_project 14 95208668 95213096 + Lmo7 protein_coding processed_transcript MGP_CASTEiJ_T0039155.1 MGP_CASTEiJ_G0020585.1 mouse_genomes_project 14 45386708 45388517 - MGP_CASTEiJ_P0039155 Cebpe protein_coding protein_coding MGP_CASTEiJ_T0038964.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43203521 43206266 + MGP_CASTEiJ_P0038964 Arhgef40 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038965.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43203635 43225113 + MGP_CASTEiJ_P0038965 Arhgef40 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038966.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43203640 43225709 + MGP_CASTEiJ_P0038966 Arhgef40 protein_coding protein_coding MGP_CASTEiJ_T0038967.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43203646 43209425 + Arhgef40 protein_coding retained_intron MGP_CASTEiJ_T0038968.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43203666 43225080 + MGP_CASTEiJ_P0038968 Arhgef40 protein_coding protein_coding MGP_CASTEiJ_T0038969.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43203688 43225091 + MGP_CASTEiJ_P0038969 Arhgef40 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038970.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43203711 43225085 + MGP_CASTEiJ_P0038970 Arhgef40 protein_coding protein_coding MGP_CASTEiJ_T0038971.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43203712 43225081 + MGP_CASTEiJ_P0038971 Arhgef40 protein_coding protein_coding MGP_CASTEiJ_T0038972.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43203714 43204871 + Arhgef40 protein_coding retained_intron MGP_CASTEiJ_T0038973.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43203717 43207886 + MGP_CASTEiJ_P0038973 Arhgef40 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038974.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43203733 43225081 + MGP_CASTEiJ_P0038974 Arhgef40 protein_coding protein_coding MGP_CASTEiJ_T0038975.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43203768 43210426 + Arhgef40 protein_coding retained_intron MGP_CASTEiJ_T0038976.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43203773 43207538 + MGP_CASTEiJ_P0038976 Arhgef40 protein_coding protein_coding MGP_CASTEiJ_T0038977.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43210537 43212781 + Arhgef40 protein_coding retained_intron MGP_CASTEiJ_T0038978.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43212777 43216483 + MGP_CASTEiJ_P0038978 Arhgef40 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038979.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43214685 43215669 + Arhgef40 protein_coding retained_intron MGP_CASTEiJ_T0038980.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43217073 43225087 + Arhgef40 protein_coding retained_intron MGP_CASTEiJ_T0038981.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43221814 43225081 + MGP_CASTEiJ_P0038981 Arhgef40 protein_coding protein_coding MGP_CASTEiJ_T0038982.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43221842 43223421 + Arhgef40 protein_coding retained_intron MGP_CASTEiJ_T0038983.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43221889 43225084 + MGP_CASTEiJ_P0038983 Arhgef40 protein_coding protein_coding MGP_CASTEiJ_T0038984.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43223028 43224479 + Arhgef40 protein_coding retained_intron MGP_CASTEiJ_T0038985.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43223539 43224999 + MGP_CASTEiJ_P0038985 Arhgef40 protein_coding protein_coding MGP_CASTEiJ_T0038986.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43223945 43224829 + Arhgef40 protein_coding retained_intron MGP_CASTEiJ_T0038987.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43223959 43224771 + Arhgef40 protein_coding retained_intron MGP_CASTEiJ_T0038988.1 MGP_CASTEiJ_G0020546.1 mouse_genomes_project 14 43224046 43224770 + Arhgef40 protein_coding retained_intron MGP_CASTEiJ_T0100651.1 MGP_CASTEiJ_G0037564.1 mouse_genomes_project 14 103666649 103666779 - Gm25901 snoRNA snoRNA MGP_CASTEiJ_T0006556.1 MGP_CASTEiJ_G0005430.1 mouse_genomes_project 14 112588517 112598940 + Gm26773 lincRNA lincRNA MGP_CASTEiJ_T0000872.1 MGP_CASTEiJ_G0000811.1 mouse_genomes_project 14 43606756 43609110 - TEC TEC MGP_CASTEiJ_T0039386.1 MGP_CASTEiJ_G0020661.1 mouse_genomes_project 14 47773568 47855783 + MGP_CASTEiJ_P0039386 Zmym2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0011043.1 MGP_CASTEiJ_G0009231.1 mouse_genomes_project 14 47383181 47383288 + Gm22431 misc_RNA misc_RNA MGP_CASTEiJ_T0038405.1 MGP_CASTEiJ_G0020367.1 mouse_genomes_project 14 23688710 23789041 + MGP_CASTEiJ_P0038405 Sfmbt1 protein_coding protein_coding MGP_CASTEiJ_T0038406.1 MGP_CASTEiJ_G0020367.1 mouse_genomes_project 14 23689032 23786159 + MGP_CASTEiJ_P0038406 Sfmbt1 protein_coding protein_coding MGP_CASTEiJ_T0038407.1 MGP_CASTEiJ_G0020367.1 mouse_genomes_project 14 23689480 23793801 + MGP_CASTEiJ_P0038407 Sfmbt1 protein_coding protein_coding MGP_CASTEiJ_T0038408.1 MGP_CASTEiJ_G0020367.1 mouse_genomes_project 14 23690390 23789427 + MGP_CASTEiJ_P0038408 Sfmbt1 protein_coding protein_coding MGP_CASTEiJ_T0038409.1 MGP_CASTEiJ_G0020367.1 mouse_genomes_project 14 23745072 23789426 + MGP_CASTEiJ_P0038409 Sfmbt1 protein_coding protein_coding MGP_CASTEiJ_T0038410.1 MGP_CASTEiJ_G0020367.1 mouse_genomes_project 14 23765109 23766868 + Sfmbt1 protein_coding retained_intron MGP_CASTEiJ_T0038602.1 MGP_CASTEiJ_G0020409.1 mouse_genomes_project 14 25769931 25797904 - MGP_CASTEiJ_P0038602 3425401B19Rik protein_coding protein_coding MGP_CASTEiJ_T0006509.1 MGP_CASTEiJ_G0005396.1 mouse_genomes_project 14 37466133 37477679 + E130120K24Rik lincRNA lincRNA MGP_CASTEiJ_T0039961.1 MGP_CASTEiJ_G0020868.1 mouse_genomes_project 14 80969718 80976360 - MGP_CASTEiJ_P0039961 Pcdh20 protein_coding protein_coding MGP_CASTEiJ_T0039962.1 MGP_CASTEiJ_G0020868.1 mouse_genomes_project 14 80971832 80976310 - MGP_CASTEiJ_P0039962 Pcdh20 protein_coding protein_coding MGP_CASTEiJ_T0002459.1 MGP_CASTEiJ_G0002370.1 mouse_genomes_project 14 44833327 44833387 + MGP_CASTEiJ_P0002459 Traj29 TR_J_gene TR_J_gene MGP_CASTEiJ_T0002538.1 MGP_CASTEiJ_G0002441.1 mouse_genomes_project 14 44095812 44096282 + MGP_CASTEiJ_P0002538 TR_V_gene TR_V_gene MGP_CASTEiJ_T0003430.1 MGP_CASTEiJ_G0003128.1 mouse_genomes_project 14 44712318 44771365 - Gm42877 antisense antisense MGP_CASTEiJ_T0003431.1 MGP_CASTEiJ_G0003128.1 mouse_genomes_project 14 44750654 44771425 - Gm42877 antisense antisense MGP_CASTEiJ_T0006486.1 MGP_CASTEiJ_G0005380.1 mouse_genomes_project 14 17533479 17537601 + 4931403M11Rik lincRNA lincRNA MGP_CASTEiJ_T0039796.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64732094 64749788 + Rcbtb2 protein_coding retained_intron MGP_CASTEiJ_T0039797.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64732094 64758928 + MGP_CASTEiJ_P0039797 Rcbtb2 protein_coding protein_coding MGP_CASTEiJ_T0039798.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64735820 64761285 + MGP_CASTEiJ_P0039798 Rcbtb2 protein_coding protein_coding MGP_CASTEiJ_T0039799.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64735842 64763069 + MGP_CASTEiJ_P0039799 Rcbtb2 protein_coding protein_coding MGP_CASTEiJ_T0039800.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64735992 64749787 + Rcbtb2 protein_coding retained_intron MGP_CASTEiJ_T0039801.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64736008 64758979 + MGP_CASTEiJ_P0039801 Rcbtb2 protein_coding protein_coding MGP_CASTEiJ_T0039802.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64736148 64796644 + MGP_CASTEiJ_P0039802 Rcbtb2 protein_coding protein_coding MGP_CASTEiJ_T0039803.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64736236 64780361 + MGP_CASTEiJ_P0039803 Rcbtb2 protein_coding protein_coding MGP_CASTEiJ_T0039804.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64736277 64761349 + MGP_CASTEiJ_P0039804 Rcbtb2 protein_coding protein_coding MGP_CASTEiJ_T0039805.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64736294 64760650 + Rcbtb2 protein_coding retained_intron MGP_CASTEiJ_T0039806.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64736302 64749356 + Rcbtb2 protein_coding retained_intron MGP_CASTEiJ_T0039807.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64736347 64780348 + MGP_CASTEiJ_P0039807 Rcbtb2 protein_coding protein_coding MGP_CASTEiJ_T0039808.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64736361 64779463 + MGP_CASTEiJ_P0039808 Rcbtb2 protein_coding protein_coding MGP_CASTEiJ_T0039809.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64736384 64780519 + MGP_CASTEiJ_P0039809 Rcbtb2 protein_coding protein_coding MGP_CASTEiJ_T0039810.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64736395 64749741 + Rcbtb2 protein_coding retained_intron MGP_CASTEiJ_T0039811.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64736395 64763402 + MGP_CASTEiJ_P0039811 Rcbtb2 protein_coding protein_coding MGP_CASTEiJ_T0039812.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64736442 64761416 + MGP_CASTEiJ_P0039812 Rcbtb2 protein_coding protein_coding MGP_CASTEiJ_T0039813.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64736685 64758560 + MGP_CASTEiJ_P0039813 Rcbtb2 protein_coding protein_coding MGP_CASTEiJ_T0039814.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64758530 64778907 + MGP_CASTEiJ_P0039814 Rcbtb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039815.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64758530 64778904 + MGP_CASTEiJ_P0039815 Rcbtb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039816.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64770446 64778823 + MGP_CASTEiJ_P0039816 Rcbtb2 protein_coding protein_coding MGP_CASTEiJ_T0039817.1 MGP_CASTEiJ_G0020814.1 mouse_genomes_project 14 64771006 64778987 + Rcbtb2 protein_coding retained_intron MGP_CASTEiJ_T0039955.1 MGP_CASTEiJ_G0020867.1 mouse_genomes_project 14 79896944 79998171 + MGP_CASTEiJ_P0039955 Tdrd3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039956.1 MGP_CASTEiJ_G0020867.1 mouse_genomes_project 14 79896957 80035725 + MGP_CASTEiJ_P0039956 Tdrd3 protein_coding protein_coding MGP_CASTEiJ_T0039957.1 MGP_CASTEiJ_G0020867.1 mouse_genomes_project 14 79896957 80001015 + MGP_CASTEiJ_P0039957 Tdrd3 protein_coding protein_coding MGP_CASTEiJ_T0039958.1 MGP_CASTEiJ_G0020867.1 mouse_genomes_project 14 79896984 80035736 + MGP_CASTEiJ_P0039958 Tdrd3 protein_coding protein_coding MGP_CASTEiJ_T0039959.1 MGP_CASTEiJ_G0020867.1 mouse_genomes_project 14 79939804 79965230 + MGP_CASTEiJ_P0039959 Tdrd3 protein_coding protein_coding MGP_CASTEiJ_T0039960.1 MGP_CASTEiJ_G0020867.1 mouse_genomes_project 14 79954276 79970703 + MGP_CASTEiJ_P0039960 Tdrd3 protein_coding protein_coding MGP_CASTEiJ_T0038014.1 MGP_CASTEiJ_G0020256.1 mouse_genomes_project 14 4765290 4769279 - MGP_CASTEiJ_P0038014 Fezf2 protein_coding protein_coding MGP_CASTEiJ_T0038372.1 MGP_CASTEiJ_G0020361.1 mouse_genomes_project 14 22915299 22947164 + MGP_CASTEiJ_P0038372 Chdh protein_coding protein_coding MGP_CASTEiJ_T0038373.1 MGP_CASTEiJ_G0020361.1 mouse_genomes_project 14 22915447 22933808 + Chdh protein_coding processed_transcript MGP_CASTEiJ_T0038374.1 MGP_CASTEiJ_G0020361.1 mouse_genomes_project 14 22928952 22944951 + MGP_CASTEiJ_P0038374 Chdh protein_coding protein_coding MGP_CASTEiJ_T0038375.1 MGP_CASTEiJ_G0020361.1 mouse_genomes_project 14 22938056 22943689 + MGP_CASTEiJ_P0038375 Chdh protein_coding unknown_likely_coding MGP_CASTEiJ_T0100624.1 MGP_CASTEiJ_G0037537.1 mouse_genomes_project 14 59110090 59110222 + Gm24981 snoRNA snoRNA MGP_CASTEiJ_T0038367.1 MGP_CASTEiJ_G0020359.1 mouse_genomes_project 14 22883344 22899477 + MGP_CASTEiJ_P0038367 Actr8 protein_coding protein_coding MGP_CASTEiJ_T0003468.1 MGP_CASTEiJ_G0003155.1 mouse_genomes_project 14 97032437 97037176 - Slain1os antisense antisense MGP_CASTEiJ_T0039428.1 MGP_CASTEiJ_G0020675.1 mouse_genomes_project 14 48794766 48858523 - MGP_CASTEiJ_P0039428 Zdhhc20 protein_coding protein_coding MGP_CASTEiJ_T0039429.1 MGP_CASTEiJ_G0020675.1 mouse_genomes_project 14 48799856 48858441 - MGP_CASTEiJ_P0039429 Zdhhc20 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038569.1 MGP_CASTEiJ_G0020400.1 mouse_genomes_project 14 25237112 25256392 + MGP_CASTEiJ_P0038569 protein_coding protein_coding MGP_CASTEiJ_T0040101.1 MGP_CASTEiJ_G0020914.1 mouse_genomes_project 14 113716140 114476494 + MGP_CASTEiJ_P0040101 Hs6st3 protein_coding protein_coding MGP_CASTEiJ_T0011038.1 MGP_CASTEiJ_G0009226.1 mouse_genomes_project 14 25088596 25088693 + Gm26045 misc_RNA misc_RNA MGP_CASTEiJ_T0038653.1 MGP_CASTEiJ_G0020430.1 mouse_genomes_project 14 27425088 27471633 - MGP_CASTEiJ_P0038653 Fam35a protein_coding unknown_likely_coding MGP_CASTEiJ_T0002573.1 MGP_CASTEiJ_G0002473.1 mouse_genomes_project 14 44345827 44346403 + MGP_CASTEiJ_P0002573 TR_V_gene TR_V_gene MGP_CASTEiJ_T0038870.1 MGP_CASTEiJ_G0020498.1 mouse_genomes_project 14 41207221 41208256 + MGP_CASTEiJ_P0038870 Olfr727 protein_coding protein_coding MGP_CASTEiJ_T0039900.1 MGP_CASTEiJ_G0020842.1 mouse_genomes_project 14 68878074 68939316 + MGP_CASTEiJ_P0039900 Ccdc122 protein_coding protein_coding MGP_CASTEiJ_T0039901.1 MGP_CASTEiJ_G0020842.1 mouse_genomes_project 14 68878084 68939316 + MGP_CASTEiJ_P0039901 Ccdc122 protein_coding protein_coding MGP_CASTEiJ_T0039902.1 MGP_CASTEiJ_G0020842.1 mouse_genomes_project 14 68878166 68938800 + MGP_CASTEiJ_P0039902 Ccdc122 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039903.1 MGP_CASTEiJ_G0020842.1 mouse_genomes_project 14 68938079 68939369 + Ccdc122 protein_coding processed_transcript MGP_CASTEiJ_T0038108.1 MGP_CASTEiJ_G0020287.1 mouse_genomes_project 14 12729394 12737129 - MGP_CASTEiJ_P0038108 Saysd1 protein_coding protein_coding MGP_CASTEiJ_T0038109.1 MGP_CASTEiJ_G0020287.1 mouse_genomes_project 14 12729402 12737095 - MGP_CASTEiJ_P0038109 Saysd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0000884.1 MGP_CASTEiJ_G0000823.1 mouse_genomes_project 14 61015309 61017691 - TEC TEC MGP_CASTEiJ_T0012609.1 MGP_CASTEiJ_G0010772.1 mouse_genomes_project 14 18721292 18721539 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039863.1 MGP_CASTEiJ_G0020830.1 mouse_genomes_project 14 67280677 67289983 - MGP_CASTEiJ_P0039863 Spert protein_coding protein_coding MGP_CASTEiJ_T0039864.1 MGP_CASTEiJ_G0020830.1 mouse_genomes_project 14 67280677 67291114 - MGP_CASTEiJ_P0039864 Spert protein_coding protein_coding MGP_CASTEiJ_T0039865.1 MGP_CASTEiJ_G0020830.1 mouse_genomes_project 14 67280677 67291114 - MGP_CASTEiJ_P0039865 Spert protein_coding protein_coding MGP_CASTEiJ_T0039866.1 MGP_CASTEiJ_G0020830.1 mouse_genomes_project 14 67280677 67289983 - MGP_CASTEiJ_P0039866 Spert protein_coding protein_coding MGP_CASTEiJ_T0000882.1 MGP_CASTEiJ_G0000821.1 mouse_genomes_project 14 60894571 60899089 - TEC TEC MGP_CASTEiJ_T0038066.1 MGP_CASTEiJ_G0020276.1 mouse_genomes_project 14 10228000 10620506 + MGP_CASTEiJ_P0038066 Thrb protein_coding protein_coding MGP_CASTEiJ_T0038067.1 MGP_CASTEiJ_G0020276.1 mouse_genomes_project 14 10228000 10622035 + MGP_CASTEiJ_P0038067 Thrb protein_coding protein_coding MGP_CASTEiJ_T0038068.1 MGP_CASTEiJ_G0020276.1 mouse_genomes_project 14 10556980 10622033 + MGP_CASTEiJ_P0038068 Thrb protein_coding protein_coding MGP_CASTEiJ_T0038072.1 MGP_CASTEiJ_G0020279.1 mouse_genomes_project 14 10828443 10840864 + MGP_CASTEiJ_P0038072 Nkiras1 protein_coding protein_coding MGP_CASTEiJ_T0038073.1 MGP_CASTEiJ_G0020279.1 mouse_genomes_project 14 10828493 10836912 + MGP_CASTEiJ_P0038073 Nkiras1 protein_coding protein_coding MGP_CASTEiJ_T0038074.1 MGP_CASTEiJ_G0020279.1 mouse_genomes_project 14 10828511 10834243 + Nkiras1 protein_coding retained_intron MGP_CASTEiJ_T0038075.1 MGP_CASTEiJ_G0020279.1 mouse_genomes_project 14 10828518 10835280 + Nkiras1 protein_coding processed_transcript MGP_CASTEiJ_T0038076.1 MGP_CASTEiJ_G0020279.1 mouse_genomes_project 14 10828534 10837307 + MGP_CASTEiJ_P0038076 Nkiras1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038077.1 MGP_CASTEiJ_G0020279.1 mouse_genomes_project 14 10828545 10833999 + Nkiras1 protein_coding retained_intron MGP_CASTEiJ_T0038078.1 MGP_CASTEiJ_G0020279.1 mouse_genomes_project 14 10828571 10835421 + Nkiras1 protein_coding processed_transcript MGP_CASTEiJ_T0038501.1 MGP_CASTEiJ_G0020383.1 mouse_genomes_project 14 24228913 24241297 + MGP_CASTEiJ_P0038501 Sema3g protein_coding protein_coding MGP_CASTEiJ_T0039370.1 MGP_CASTEiJ_G0020655.1 mouse_genomes_project 14 47245854 47372822 + MGP_CASTEiJ_P0039370 Rnf17 protein_coding protein_coding MGP_CASTEiJ_T0009757.1 MGP_CASTEiJ_G0007945.1 mouse_genomes_project 14 109386417 109386497 + Mir92-1 miRNA miRNA MGP_CASTEiJ_T0038902.1 MGP_CASTEiJ_G0020525.1 mouse_genomes_project 14 42046703 42067383 - MGP_CASTEiJ_P0038902 Osgep protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038903.1 MGP_CASTEiJ_G0020525.1 mouse_genomes_project 14 42055221 42067442 - MGP_CASTEiJ_P0038903 Osgep protein_coding protein_coding MGP_CASTEiJ_T0038904.1 MGP_CASTEiJ_G0020525.1 mouse_genomes_project 14 42057177 42067379 - MGP_CASTEiJ_P0038904 Osgep protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038905.1 MGP_CASTEiJ_G0020525.1 mouse_genomes_project 14 42057181 42067421 - MGP_CASTEiJ_P0038905 Osgep protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038906.1 MGP_CASTEiJ_G0020525.1 mouse_genomes_project 14 42057181 42067237 - MGP_CASTEiJ_P0038906 Osgep protein_coding protein_coding MGP_CASTEiJ_T0038907.1 MGP_CASTEiJ_G0020525.1 mouse_genomes_project 14 42057283 42058867 - Osgep protein_coding retained_intron MGP_CASTEiJ_T0038908.1 MGP_CASTEiJ_G0020525.1 mouse_genomes_project 14 42058186 42067175 - MGP_CASTEiJ_P0038908 Osgep protein_coding protein_coding MGP_CASTEiJ_T0038909.1 MGP_CASTEiJ_G0020525.1 mouse_genomes_project 14 42058586 42067392 - Osgep protein_coding retained_intron MGP_CASTEiJ_T0039339.1 MGP_CASTEiJ_G0020633.1 mouse_genomes_project 14 46522293 46542473 - MGP_CASTEiJ_P0039339 Adcy4 protein_coding protein_coding MGP_CASTEiJ_T0039340.1 MGP_CASTEiJ_G0020633.1 mouse_genomes_project 14 46522328 46542450 - MGP_CASTEiJ_P0039340 Adcy4 protein_coding protein_coding MGP_CASTEiJ_T0002561.1 MGP_CASTEiJ_G0002461.1 mouse_genomes_project 14 44260076 44262258 + MGP_CASTEiJ_P0002561 TR_V_gene TR_V_gene MGP_CASTEiJ_T0038709.1 MGP_CASTEiJ_G0020452.1 mouse_genomes_project 14 34283142 34343800 - MGP_CASTEiJ_P0038709 Tspan14 protein_coding protein_coding MGP_CASTEiJ_T0038710.1 MGP_CASTEiJ_G0020453.1 mouse_genomes_project 14 34373494 34383979 - MGP_CASTEiJ_P0038710 Fam213a protein_coding protein_coding MGP_CASTEiJ_T0038711.1 MGP_CASTEiJ_G0020453.1 mouse_genomes_project 14 34374304 34384294 - MGP_CASTEiJ_P0038711 Fam213a protein_coding protein_coding MGP_CASTEiJ_T0038712.1 MGP_CASTEiJ_G0020453.1 mouse_genomes_project 14 34377520 34384739 - MGP_CASTEiJ_P0038712 Fam213a protein_coding protein_coding MGP_CASTEiJ_T0038713.1 MGP_CASTEiJ_G0020453.1 mouse_genomes_project 14 34378656 34382867 - Fam213a protein_coding retained_intron MGP_CASTEiJ_T0038714.1 MGP_CASTEiJ_G0020453.1 mouse_genomes_project 14 34378694 34386730 - MGP_CASTEiJ_P0038714 Fam213a protein_coding protein_coding MGP_CASTEiJ_T0038715.1 MGP_CASTEiJ_G0020453.1 mouse_genomes_project 14 34378736 34393528 - MGP_CASTEiJ_P0038715 Fam213a protein_coding protein_coding MGP_CASTEiJ_T0038716.1 MGP_CASTEiJ_G0020453.1 mouse_genomes_project 14 34383801 34386674 - MGP_CASTEiJ_P0038716 Fam213a protein_coding protein_coding MGP_CASTEiJ_T0038887.1 MGP_CASTEiJ_G0020512.1 mouse_genomes_project 14 41571727 41572663 + MGP_CASTEiJ_P0038887 Olfr740 protein_coding protein_coding MGP_CASTEiJ_T0039322.1 MGP_CASTEiJ_G0020624.1 mouse_genomes_project 14 46422418 46428928 + MGP_CASTEiJ_P0039322 Gmpr2 protein_coding protein_coding MGP_CASTEiJ_T0039528.1 MGP_CASTEiJ_G0020713.1 mouse_genomes_project 14 54300991 54304803 - MGP_CASTEiJ_P0039528 Defb30 protein_coding protein_coding MGP_CASTEiJ_T0039529.1 MGP_CASTEiJ_G0020713.1 mouse_genomes_project 14 54301411 54316994 - MGP_CASTEiJ_P0039529 Defb30 protein_coding protein_coding MGP_CASTEiJ_T0039530.1 MGP_CASTEiJ_G0020713.1 mouse_genomes_project 14 54302731 54316999 - MGP_CASTEiJ_P0039530 Defb30 protein_coding protein_coding MGP_CASTEiJ_T0039531.1 MGP_CASTEiJ_G0020713.1 mouse_genomes_project 14 54302817 54304816 - MGP_CASTEiJ_P0039531 Defb30 protein_coding protein_coding MGP_CASTEiJ_T0039755.1 MGP_CASTEiJ_G0020796.1 mouse_genomes_project 14 61925099 61931151 - MGP_CASTEiJ_P0039755 Polr3d protein_coding protein_coding MGP_CASTEiJ_T0039756.1 MGP_CASTEiJ_G0020796.1 mouse_genomes_project 14 61925099 61930907 - MGP_CASTEiJ_P0039756 Polr3d protein_coding protein_coding MGP_CASTEiJ_T0038248.1 MGP_CASTEiJ_G0020322.1 mouse_genomes_project 14 17179723 17191403 + MGP_CASTEiJ_P0038248 protein_coding protein_coding MGP_CASTEiJ_T0038249.1 MGP_CASTEiJ_G0020322.1 mouse_genomes_project 14 17179745 17189709 + MGP_CASTEiJ_P0038249 protein_coding protein_coding MGP_CASTEiJ_T0038250.1 MGP_CASTEiJ_G0020322.1 mouse_genomes_project 14 17179793 17184796 + protein_coding retained_intron MGP_CASTEiJ_T0038251.1 MGP_CASTEiJ_G0020322.1 mouse_genomes_project 14 17179828 17191410 + MGP_CASTEiJ_P0038251 protein_coding protein_coding MGP_CASTEiJ_T0038252.1 MGP_CASTEiJ_G0020322.1 mouse_genomes_project 14 17179841 17184566 + MGP_CASTEiJ_P0038252 protein_coding protein_coding MGP_CASTEiJ_T0038253.1 MGP_CASTEiJ_G0020322.1 mouse_genomes_project 14 17179873 17191403 + MGP_CASTEiJ_P0038253 protein_coding protein_coding MGP_CASTEiJ_T0012677.1 MGP_CASTEiJ_G0010840.1 mouse_genomes_project 14 118486319 118486533 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039683.1 MGP_CASTEiJ_G0020768.1 mouse_genomes_project 14 59659669 59664928 + MGP_CASTEiJ_P0039683 Nefl protein_coding protein_coding MGP_CASTEiJ_T0003413.1 MGP_CASTEiJ_G0003112.1 mouse_genomes_project 14 16400379 16404708 + Gm29626 antisense antisense MGP_CASTEiJ_T0003414.1 MGP_CASTEiJ_G0003112.1 mouse_genomes_project 14 16400396 16404706 + Gm29626 antisense antisense MGP_CASTEiJ_T0002618.1 MGP_CASTEiJ_G0002508.1 mouse_genomes_project 14 43895380 43895870 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0100629.1 MGP_CASTEiJ_G0037542.1 mouse_genomes_project 14 70540510 70540632 + Gm26251 snoRNA snoRNA MGP_CASTEiJ_T0039356.1 MGP_CASTEiJ_G0020643.1 mouse_genomes_project 14 46867270 46870973 - MGP_CASTEiJ_P0039356 Mcpt4 protein_coding protein_coding MGP_CASTEiJ_T0100595.1 MGP_CASTEiJ_G0037508.1 mouse_genomes_project 14 2820331 2820531 + Gm22053 snoRNA snoRNA MGP_CASTEiJ_T0099369.1 MGP_CASTEiJ_G0036282.1 mouse_genomes_project 14 10655118 10655181 + Gm27851 snRNA snRNA MGP_CASTEiJ_T0006546.1 MGP_CASTEiJ_G0005422.1 mouse_genomes_project 14 62350035 62371504 + 2410012E07Rik lincRNA lincRNA MGP_CASTEiJ_T0039489.1 MGP_CASTEiJ_G0020695.1 mouse_genomes_project 14 52269753 52378372 + MGP_CASTEiJ_P0039489 protein_coding protein_coding MGP_CASTEiJ_T0039490.1 MGP_CASTEiJ_G0020695.1 mouse_genomes_project 14 52269787 52333451 + MGP_CASTEiJ_P0039490 protein_coding protein_coding MGP_CASTEiJ_T0039491.1 MGP_CASTEiJ_G0020695.1 mouse_genomes_project 14 52281240 52350427 + MGP_CASTEiJ_P0039491 protein_coding protein_coding MGP_CASTEiJ_T0039492.1 MGP_CASTEiJ_G0020695.1 mouse_genomes_project 14 52305893 52329442 + MGP_CASTEiJ_P0039492 protein_coding protein_coding MGP_CASTEiJ_T0039493.1 MGP_CASTEiJ_G0020695.1 mouse_genomes_project 14 52306108 52350431 + MGP_CASTEiJ_P0039493 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039494.1 MGP_CASTEiJ_G0020695.1 mouse_genomes_project 14 52322549 52339817 + protein_coding retained_intron MGP_CASTEiJ_T0012676.1 MGP_CASTEiJ_G0010839.1 mouse_genomes_project 14 117289573 117290212 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100615.1 MGP_CASTEiJ_G0037528.1 mouse_genomes_project 14 47057302 47057428 + Gm24118 snoRNA snoRNA MGP_CASTEiJ_T0002564.1 MGP_CASTEiJ_G0002464.1 mouse_genomes_project 14 44276265 44276491 + MGP_CASTEiJ_P0002564 TR_V_gene TR_V_gene MGP_CASTEiJ_T0098506.1 MGP_CASTEiJ_G0035437.1 mouse_genomes_project 14 58057301 58057391 - Gm23899 rRNA rRNA MGP_CASTEiJ_T0039435.1 MGP_CASTEiJ_G0020678.1 mouse_genomes_project 14 50127946 50142519 - MGP_CASTEiJ_P0039435 1700129C05Rik protein_coding protein_coding MGP_CASTEiJ_T0039436.1 MGP_CASTEiJ_G0020678.1 mouse_genomes_project 14 50128145 50142519 - MGP_CASTEiJ_P0039436 1700129C05Rik protein_coding protein_coding MGP_CASTEiJ_T0039437.1 MGP_CASTEiJ_G0020678.1 mouse_genomes_project 14 50128148 50142519 - MGP_CASTEiJ_P0039437 1700129C05Rik protein_coding protein_coding MGP_CASTEiJ_T0039438.1 MGP_CASTEiJ_G0020678.1 mouse_genomes_project 14 50140959 50142519 - MGP_CASTEiJ_P0039438 1700129C05Rik protein_coding protein_coding MGP_CASTEiJ_T0011046.1 MGP_CASTEiJ_G0009234.1 mouse_genomes_project 14 52799675 52799812 + Gm27972 misc_RNA misc_RNA MGP_CASTEiJ_T0039348.1 MGP_CASTEiJ_G0020637.1 mouse_genomes_project 14 46628399 46642722 - MGP_CASTEiJ_P0039348 Cbln3 protein_coding protein_coding MGP_CASTEiJ_T0039349.1 MGP_CASTEiJ_G0020637.1 mouse_genomes_project 14 46640505 46642698 - MGP_CASTEiJ_P0039349 Cbln3 protein_coding protein_coding MGP_CASTEiJ_T0038786.1 MGP_CASTEiJ_G0020479.1 mouse_genomes_project 14 38228735 38249516 + MGP_CASTEiJ_P0038786 Socs4 protein_coding protein_coding MGP_CASTEiJ_T0038637.1 MGP_CASTEiJ_G0020418.1 mouse_genomes_project 14 26746533 26802826 + MGP_CASTEiJ_P0038637 Ptpn20 protein_coding protein_coding MGP_CASTEiJ_T0038871.1 MGP_CASTEiJ_G0020499.1 mouse_genomes_project 14 41221609 41222545 - MGP_CASTEiJ_P0038871 Olfr728 protein_coding protein_coding MGP_CASTEiJ_T0040063.1 MGP_CASTEiJ_G0020903.1 mouse_genomes_project 14 109434924 109470288 + Gpc5 protein_coding retained_intron MGP_CASTEiJ_T0040064.1 MGP_CASTEiJ_G0020903.1 mouse_genomes_project 14 109434959 110948393 + MGP_CASTEiJ_P0040064 Gpc5 protein_coding protein_coding MGP_CASTEiJ_T0040065.1 MGP_CASTEiJ_G0020903.1 mouse_genomes_project 14 109434981 109770869 + MGP_CASTEiJ_P0040065 Gpc5 protein_coding protein_coding MGP_CASTEiJ_T0040066.1 MGP_CASTEiJ_G0020903.1 mouse_genomes_project 14 109435335 110947651 + MGP_CASTEiJ_P0040066 Gpc5 protein_coding protein_coding MGP_CASTEiJ_T0039181.1 MGP_CASTEiJ_G0020596.1 mouse_genomes_project 14 45637372 45664549 - MGP_CASTEiJ_P0039181 protein_coding protein_coding MGP_CASTEiJ_T0039182.1 MGP_CASTEiJ_G0020596.1 mouse_genomes_project 14 45644212 45663416 - MGP_CASTEiJ_P0039182 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039183.1 MGP_CASTEiJ_G0020596.1 mouse_genomes_project 14 45661928 45664479 - MGP_CASTEiJ_P0039183 protein_coding protein_coding MGP_CASTEiJ_T0039184.1 MGP_CASTEiJ_G0020596.1 mouse_genomes_project 14 45661928 45664513 - MGP_CASTEiJ_P0039184 protein_coding protein_coding MGP_CASTEiJ_T0039185.1 MGP_CASTEiJ_G0020596.1 mouse_genomes_project 14 45663240 45664835 - MGP_CASTEiJ_P0039185 protein_coding protein_coding MGP_CASTEiJ_T0006501.1 MGP_CASTEiJ_G0005389.1 mouse_genomes_project 14 25556172 25574839 + Gm2990 lincRNA lincRNA MGP_CASTEiJ_T0038071.1 MGP_CASTEiJ_G0020278.1 mouse_genomes_project 14 10826611 10828699 - MGP_CASTEiJ_P0038071 protein_coding protein_coding MGP_CASTEiJ_T0009753.1 MGP_CASTEiJ_G0007941.1 mouse_genomes_project 14 109385841 109385937 + Mir18 miRNA miRNA MGP_CASTEiJ_T0038939.1 MGP_CASTEiJ_G0020540.1 mouse_genomes_project 14 42441147 42444740 - MGP_CASTEiJ_P0038939 Ang2 protein_coding protein_coding MGP_CASTEiJ_T0039985.1 MGP_CASTEiJ_G0020880.1 mouse_genomes_project 14 94699074 94869669 - MGP_CASTEiJ_P0039985 Tbc1d4 protein_coding protein_coding MGP_CASTEiJ_T0039986.1 MGP_CASTEiJ_G0020880.1 mouse_genomes_project 14 94699082 94723165 - Tbc1d4 protein_coding retained_intron MGP_CASTEiJ_T0039987.1 MGP_CASTEiJ_G0020880.1 mouse_genomes_project 14 94699082 94767151 - MGP_CASTEiJ_P0039987 Tbc1d4 protein_coding protein_coding MGP_CASTEiJ_T0039988.1 MGP_CASTEiJ_G0020880.1 mouse_genomes_project 14 94700433 94869122 - MGP_CASTEiJ_P0039988 Tbc1d4 protein_coding protein_coding MGP_CASTEiJ_T0039989.1 MGP_CASTEiJ_G0020880.1 mouse_genomes_project 14 94701177 94868974 - MGP_CASTEiJ_P0039989 Tbc1d4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039990.1 MGP_CASTEiJ_G0020880.1 mouse_genomes_project 14 94722513 94869468 - Tbc1d4 protein_coding retained_intron MGP_CASTEiJ_T0039991.1 MGP_CASTEiJ_G0020880.1 mouse_genomes_project 14 94722735 94869303 - Tbc1d4 protein_coding retained_intron MGP_CASTEiJ_T0039992.1 MGP_CASTEiJ_G0020880.1 mouse_genomes_project 14 94722735 94869303 - Tbc1d4 protein_coding retained_intron MGP_CASTEiJ_T0039993.1 MGP_CASTEiJ_G0020880.1 mouse_genomes_project 14 94722904 94760111 - MGP_CASTEiJ_P0039993 Tbc1d4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039994.1 MGP_CASTEiJ_G0020880.1 mouse_genomes_project 14 94722915 94869827 - MGP_CASTEiJ_P0039994 Tbc1d4 protein_coding protein_coding MGP_CASTEiJ_T0039995.1 MGP_CASTEiJ_G0020880.1 mouse_genomes_project 14 94764503 94767095 - Tbc1d4 protein_coding retained_intron MGP_CASTEiJ_T0040102.1 MGP_CASTEiJ_G0020915.1 mouse_genomes_project 14 114622178 114648068 - MGP_CASTEiJ_P0040102 Oxgr1 protein_coding protein_coding MGP_CASTEiJ_T0002547.1 MGP_CASTEiJ_G0002450.1 mouse_genomes_project 14 44149315 44149864 + MGP_CASTEiJ_P0002547 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039566.1 MGP_CASTEiJ_G0020728.1 mouse_genomes_project 14 55400613 55412058 - MGP_CASTEiJ_P0039566 Prss55 protein_coding protein_coding MGP_CASTEiJ_T0039567.1 MGP_CASTEiJ_G0020728.1 mouse_genomes_project 14 55400620 55412015 - MGP_CASTEiJ_P0039567 Prss55 protein_coding protein_coding MGP_CASTEiJ_T0039568.1 MGP_CASTEiJ_G0020728.1 mouse_genomes_project 14 55404582 55416733 - Prss55 protein_coding processed_transcript MGP_CASTEiJ_T0003455.1 MGP_CASTEiJ_G0003147.1 mouse_genomes_project 14 60872385 60875224 + Gm27222 antisense antisense MGP_CASTEiJ_T0012625.1 MGP_CASTEiJ_G0010788.1 mouse_genomes_project 14 36811983 36812362 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039915.1 MGP_CASTEiJ_G0020849.1 mouse_genomes_project 14 70418338 70463022 - MGP_CASTEiJ_P0039915 Akap11 protein_coding protein_coding MGP_CASTEiJ_T0039916.1 MGP_CASTEiJ_G0020849.1 mouse_genomes_project 14 70418338 70462970 - MGP_CASTEiJ_P0039916 Akap11 protein_coding protein_coding MGP_CASTEiJ_T0039784.1 MGP_CASTEiJ_G0020810.1 mouse_genomes_project 14 62390441 62483636 + MGP_CASTEiJ_P0039784 Gfra2 protein_coding protein_coding MGP_CASTEiJ_T0039785.1 MGP_CASTEiJ_G0020810.1 mouse_genomes_project 14 62396254 62480783 + MGP_CASTEiJ_P0039785 Gfra2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039355.1 MGP_CASTEiJ_G0020642.1 mouse_genomes_project 14 46840897 46843409 + MGP_CASTEiJ_P0039355 Mcpt2 protein_coding protein_coding MGP_CASTEiJ_T0100611.1 MGP_CASTEiJ_G0037524.1 mouse_genomes_project 14 43291430 43291500 + Gm22354 snoRNA snoRNA MGP_CASTEiJ_T0038027.1 MGP_CASTEiJ_G0020261.1 mouse_genomes_project 14 6498625 6514160 - MGP_CASTEiJ_P0038027 Thoc7 protein_coding protein_coding MGP_CASTEiJ_T0039521.1 MGP_CASTEiJ_G0020708.1 mouse_genomes_project 14 53911019 53998773 - MGP_CASTEiJ_P0039521 Ints6 protein_coding protein_coding MGP_CASTEiJ_T0039522.1 MGP_CASTEiJ_G0020708.1 mouse_genomes_project 14 53928238 53998319 - MGP_CASTEiJ_P0039522 Ints6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039523.1 MGP_CASTEiJ_G0020708.1 mouse_genomes_project 14 53938963 53998384 - MGP_CASTEiJ_P0039523 Ints6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012598.1 MGP_CASTEiJ_G0010761.1 mouse_genomes_project 14 2212539 2213140 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039917.1 MGP_CASTEiJ_G0020850.1 mouse_genomes_project 14 70497195 70673316 - MGP_CASTEiJ_P0039917 Dgkh protein_coding protein_coding MGP_CASTEiJ_T0002545.1 MGP_CASTEiJ_G0002448.1 mouse_genomes_project 14 44139111 44139639 + MGP_CASTEiJ_P0002545 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039195.1 MGP_CASTEiJ_G0020601.1 mouse_genomes_project 14 45766196 45801536 - MGP_CASTEiJ_P0039195 Zfhx2 protein_coding protein_coding MGP_CASTEiJ_T0039196.1 MGP_CASTEiJ_G0020601.1 mouse_genomes_project 14 45772138 45779914 - Zfhx2 protein_coding retained_intron MGP_CASTEiJ_T0039197.1 MGP_CASTEiJ_G0020601.1 mouse_genomes_project 14 45782251 45788221 - Zfhx2 protein_coding retained_intron MGP_CASTEiJ_T0039198.1 MGP_CASTEiJ_G0020601.1 mouse_genomes_project 14 45798781 45801254 - Zfhx2 protein_coding retained_intron MGP_CASTEiJ_T0039722.1 MGP_CASTEiJ_G0020789.1 mouse_genomes_project 14 61598025 61613686 - MGP_CASTEiJ_P0039722 Ccar2 protein_coding protein_coding MGP_CASTEiJ_T0000883.1 MGP_CASTEiJ_G0000822.1 mouse_genomes_project 14 60901272 60902769 + TEC TEC MGP_CASTEiJ_T0099411.1 MGP_CASTEiJ_G0036324.1 mouse_genomes_project 14 98681349 98681457 - Gm24207 snRNA snRNA MGP_CASTEiJ_T0003397.1 MGP_CASTEiJ_G0003104.1 mouse_genomes_project 14 3070242 3109458 + Fhitos antisense antisense MGP_CASTEiJ_T0006511.1 MGP_CASTEiJ_G0005398.1 mouse_genomes_project 14 37749041 37756358 - lincRNA lincRNA MGP_CASTEiJ_T0006512.1 MGP_CASTEiJ_G0005398.1 mouse_genomes_project 14 37749046 37756358 - lincRNA lincRNA MGP_CASTEiJ_T0002451.1 MGP_CASTEiJ_G0002362.1 mouse_genomes_project 14 44822061 44822123 + MGP_CASTEiJ_P0002451 Traj38 TR_J_gene TR_J_gene MGP_CASTEiJ_T0003432.1 MGP_CASTEiJ_G0003129.1 mouse_genomes_project 14 44774339 44787933 - Gm43434 antisense antisense MGP_CASTEiJ_T0100613.1 MGP_CASTEiJ_G0037526.1 mouse_genomes_project 14 43504662 43504752 + Gm23758 snoRNA snoRNA MGP_CASTEiJ_T0039979.1 MGP_CASTEiJ_G0020875.1 mouse_genomes_project 14 92206439 92227655 - MGP_CASTEiJ_P0039979 Dis3 protein_coding protein_coding MGP_CASTEiJ_T0037977.1 MGP_CASTEiJ_G0020245.1 mouse_genomes_project 14 415169 490225 + MGP_CASTEiJ_P0037977 Pxk protein_coding protein_coding MGP_CASTEiJ_T0037978.1 MGP_CASTEiJ_G0020245.1 mouse_genomes_project 14 415169 490225 + MGP_CASTEiJ_P0037978 Pxk protein_coding protein_coding MGP_CASTEiJ_T0039056.1 MGP_CASTEiJ_G0020557.1 mouse_genomes_project 14 43543903 43549056 - Sall2 protein_coding processed_transcript MGP_CASTEiJ_T0039057.1 MGP_CASTEiJ_G0020557.1 mouse_genomes_project 14 43543903 43561491 - MGP_CASTEiJ_P0039057 Sall2 protein_coding protein_coding MGP_CASTEiJ_T0011045.1 MGP_CASTEiJ_G0009233.1 mouse_genomes_project 14 52794188 52794273 + Gm27747 misc_RNA misc_RNA MGP_CASTEiJ_T0040122.1 MGP_CASTEiJ_G0020926.1 mouse_genomes_project 14 116796990 116800725 + MGP_CASTEiJ_P0040122 Timm8a2 protein_coding protein_coding MGP_CASTEiJ_T0038381.1 MGP_CASTEiJ_G0020364.1 mouse_genomes_project 14 23500029 23500807 + Tkt protein_coding processed_transcript MGP_CASTEiJ_T0038382.1 MGP_CASTEiJ_G0020364.1 mouse_genomes_project 14 23500801 23529017 + MGP_CASTEiJ_P0038382 Tkt protein_coding protein_coding MGP_CASTEiJ_T0038383.1 MGP_CASTEiJ_G0020364.1 mouse_genomes_project 14 23500851 23514018 + Tkt protein_coding retained_intron MGP_CASTEiJ_T0038384.1 MGP_CASTEiJ_G0020364.1 mouse_genomes_project 14 23500881 23512224 + MGP_CASTEiJ_P0038384 Tkt protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038385.1 MGP_CASTEiJ_G0020364.1 mouse_genomes_project 14 23523996 23525312 + Tkt protein_coding retained_intron MGP_CASTEiJ_T0039897.1 MGP_CASTEiJ_G0020841.1 mouse_genomes_project 14 68863139 68877944 - MGP_CASTEiJ_P0039897 Lacc1 protein_coding protein_coding MGP_CASTEiJ_T0039898.1 MGP_CASTEiJ_G0020841.1 mouse_genomes_project 14 68873648 68878207 - Lacc1 protein_coding retained_intron MGP_CASTEiJ_T0039899.1 MGP_CASTEiJ_G0020841.1 mouse_genomes_project 14 68876256 68877384 - MGP_CASTEiJ_P0039899 Lacc1 protein_coding protein_coding MGP_CASTEiJ_T0038762.1 MGP_CASTEiJ_G0020472.1 mouse_genomes_project 14 37678715 37692996 + MGP_CASTEiJ_P0038762 Cdkn3 protein_coding protein_coding MGP_CASTEiJ_T0038763.1 MGP_CASTEiJ_G0020472.1 mouse_genomes_project 14 37678814 37692958 + MGP_CASTEiJ_P0038763 Cdkn3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009736.1 MGP_CASTEiJ_G0007924.1 mouse_genomes_project 14 55944172 55944259 + Mir3078 miRNA miRNA MGP_CASTEiJ_T0039061.1 MGP_CASTEiJ_G0020561.1 mouse_genomes_project 14 43626334 43627618 - MGP_CASTEiJ_P0039061 Olfr1511 protein_coding protein_coding MGP_CASTEiJ_T0039999.1 MGP_CASTEiJ_G0020882.1 mouse_genomes_project 14 94919203 94966047 + MGP_CASTEiJ_P0039999 Uchl3 protein_coding protein_coding MGP_CASTEiJ_T0040000.1 MGP_CASTEiJ_G0020882.1 mouse_genomes_project 14 94919254 94966072 + MGP_CASTEiJ_P0040000 Uchl3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003473.1 MGP_CASTEiJ_G0003158.1 mouse_genomes_project 14 117736749 117740988 + Gm15735 antisense antisense MGP_CASTEiJ_T0009750.1 MGP_CASTEiJ_G0007938.1 mouse_genomes_project 14 99039418 99039547 - Mir6390 miRNA miRNA MGP_CASTEiJ_T0038884.1 MGP_CASTEiJ_G0020509.1 mouse_genomes_project 14 41524709 41525645 + MGP_CASTEiJ_P0038884 Olfr738 protein_coding protein_coding MGP_CASTEiJ_T0012642.1 MGP_CASTEiJ_G0010805.1 mouse_genomes_project 14 47658322 47681043 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003420.1 MGP_CASTEiJ_G0003118.1 mouse_genomes_project 14 25376066 25378120 - Gm17210 antisense antisense MGP_CASTEiJ_T0039740.1 MGP_CASTEiJ_G0020793.1 mouse_genomes_project 14 61684258 61761821 - MGP_CASTEiJ_P0039740 Ppp3cc protein_coding protein_coding MGP_CASTEiJ_T0039720.1 MGP_CASTEiJ_G0020787.1 mouse_genomes_project 14 61534556 61537268 + MGP_CASTEiJ_P0039720 Egr3 protein_coding protein_coding MGP_CASTEiJ_T0002521.1 MGP_CASTEiJ_G0002426.1 mouse_genomes_project 14 43848929 43849202 + MGP_CASTEiJ_P0002521 TR_V_gene TR_V_gene MGP_CASTEiJ_T0006481.1 MGP_CASTEiJ_G0005376.1 mouse_genomes_project 14 11615827 11621279 - Gm4961 lincRNA lincRNA MGP_CASTEiJ_T0039280.1 MGP_CASTEiJ_G0020617.1 mouse_genomes_project 14 46347263 46353735 + MGP_CASTEiJ_P0039280 Irf9 protein_coding protein_coding MGP_CASTEiJ_T0039281.1 MGP_CASTEiJ_G0020617.1 mouse_genomes_project 14 46348269 46349553 + Irf9 protein_coding retained_intron MGP_CASTEiJ_T0039282.1 MGP_CASTEiJ_G0020617.1 mouse_genomes_project 14 46348271 46353735 + MGP_CASTEiJ_P0039282 Irf9 protein_coding protein_coding MGP_CASTEiJ_T0039283.1 MGP_CASTEiJ_G0020617.1 mouse_genomes_project 14 46348538 46353738 + MGP_CASTEiJ_P0039283 Irf9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039284.1 MGP_CASTEiJ_G0020617.1 mouse_genomes_project 14 46349512 46353732 + Irf9 protein_coding retained_intron MGP_CASTEiJ_T0039285.1 MGP_CASTEiJ_G0020617.1 mouse_genomes_project 14 46350979 46352438 + Irf9 protein_coding retained_intron MGP_CASTEiJ_T0039774.1 MGP_CASTEiJ_G0020808.1 mouse_genomes_project 14 62153277 62262353 - MGP_CASTEiJ_P0039774 Xpo7 protein_coding protein_coding MGP_CASTEiJ_T0039775.1 MGP_CASTEiJ_G0020808.1 mouse_genomes_project 14 62153277 62262353 - MGP_CASTEiJ_P0039775 Xpo7 protein_coding protein_coding MGP_CASTEiJ_T0039947.1 MGP_CASTEiJ_G0020862.1 mouse_genomes_project 14 71975997 71998807 + MGP_CASTEiJ_P0039947 Olfm4 protein_coding protein_coding MGP_CASTEiJ_T0039948.1 MGP_CASTEiJ_G0020862.1 mouse_genomes_project 14 71976020 71999746 + MGP_CASTEiJ_P0039948 Olfm4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100638.1 MGP_CASTEiJ_G0037551.1 mouse_genomes_project 14 89586879 89587008 + Gm25133 snoRNA snoRNA MGP_CASTEiJ_T0039399.1 MGP_CASTEiJ_G0020668.1 mouse_genomes_project 14 48448705 48471446 + MGP_CASTEiJ_P0039399 Il17d protein_coding protein_coding MGP_CASTEiJ_T0040075.1 MGP_CASTEiJ_G0020908.1 mouse_genomes_project 14 112718303 112722101 - MGP_CASTEiJ_P0040075 Sox21 protein_coding protein_coding MGP_CASTEiJ_T0002460.1 MGP_CASTEiJ_G0002371.1 mouse_genomes_project 14 44834042 44834107 + MGP_CASTEiJ_P0002460 Traj28 TR_J_gene TR_J_gene MGP_CASTEiJ_T0039365.1 MGP_CASTEiJ_G0020650.1 mouse_genomes_project 14 46983829 46992557 - MGP_CASTEiJ_P0039365 Gzmn protein_coding protein_coding MGP_CASTEiJ_T0099386.1 MGP_CASTEiJ_G0036299.1 mouse_genomes_project 14 42059926 42060030 + Gm24689 snRNA snRNA MGP_CASTEiJ_T0099412.1 MGP_CASTEiJ_G0036325.1 mouse_genomes_project 14 99705647 99705778 - Gm23459 snRNA snRNA MGP_CASTEiJ_T0040072.1 MGP_CASTEiJ_G0020906.1 mouse_genomes_project 14 112593784 112614911 - MGP_CASTEiJ_P0040072 Tgds protein_coding protein_coding MGP_CASTEiJ_T0039918.1 MGP_CASTEiJ_G0020851.1 mouse_genomes_project 14 70796560 71138203 + MGP_CASTEiJ_P0039918 Vwa8 protein_coding protein_coding MGP_CASTEiJ_T0039919.1 MGP_CASTEiJ_G0020851.1 mouse_genomes_project 14 70796594 71134545 + MGP_CASTEiJ_P0039919 Vwa8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012632.1 MGP_CASTEiJ_G0010795.1 mouse_genomes_project 14 43849770 43849995 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006532.1 MGP_CASTEiJ_G0005413.1 mouse_genomes_project 14 52799988 52818726 + Gm27017 lincRNA lincRNA MGP_CASTEiJ_T0040061.1 MGP_CASTEiJ_G0020901.1 mouse_genomes_project 14 104539409 104545932 - MGP_CASTEiJ_P0040061 Slitrk6 protein_coding protein_coding MGP_CASTEiJ_T0038745.1 MGP_CASTEiJ_G0020469.1 mouse_genomes_project 14 36485032 36551737 - MGP_CASTEiJ_P0038745 Ddhd1 protein_coding protein_coding MGP_CASTEiJ_T0038746.1 MGP_CASTEiJ_G0020469.1 mouse_genomes_project 14 36485343 36514065 - Ddhd1 protein_coding retained_intron MGP_CASTEiJ_T0038747.1 MGP_CASTEiJ_G0020469.1 mouse_genomes_project 14 36486507 36551692 - MGP_CASTEiJ_P0038747 Ddhd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038748.1 MGP_CASTEiJ_G0020469.1 mouse_genomes_project 14 36486507 36551692 - MGP_CASTEiJ_P0038748 Ddhd1 protein_coding protein_coding MGP_CASTEiJ_T0038749.1 MGP_CASTEiJ_G0020469.1 mouse_genomes_project 14 36486578 36515980 - Ddhd1 protein_coding retained_intron MGP_CASTEiJ_T0038750.1 MGP_CASTEiJ_G0020469.1 mouse_genomes_project 14 36486799 36494603 - MGP_CASTEiJ_P0038750 Ddhd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038751.1 MGP_CASTEiJ_G0020469.1 mouse_genomes_project 14 36487192 36513575 - MGP_CASTEiJ_P0038751 Ddhd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038752.1 MGP_CASTEiJ_G0020469.1 mouse_genomes_project 14 36487282 36551736 - MGP_CASTEiJ_P0038752 Ddhd1 protein_coding protein_coding MGP_CASTEiJ_T0038753.1 MGP_CASTEiJ_G0020469.1 mouse_genomes_project 14 36496874 36501229 - Ddhd1 protein_coding retained_intron MGP_CASTEiJ_T0038754.1 MGP_CASTEiJ_G0020469.1 mouse_genomes_project 14 36513500 36550995 - Ddhd1 protein_coding processed_transcript MGP_CASTEiJ_T0038755.1 MGP_CASTEiJ_G0020469.1 mouse_genomes_project 14 36521177 36551012 - Ddhd1 protein_coding retained_intron MGP_CASTEiJ_T0040108.1 MGP_CASTEiJ_G0020918.1 mouse_genomes_project 14 115559105 115600617 + MGP_CASTEiJ_P0040108 Ipo5 protein_coding protein_coding MGP_CASTEiJ_T0039113.1 MGP_CASTEiJ_G0020574.1 mouse_genomes_project 14 45173492 45185095 - MGP_CASTEiJ_P0039113 Prmt5 protein_coding protein_coding MGP_CASTEiJ_T0039114.1 MGP_CASTEiJ_G0020574.1 mouse_genomes_project 14 45178397 45180852 - MGP_CASTEiJ_P0039114 Prmt5 protein_coding protein_coding MGP_CASTEiJ_T0039115.1 MGP_CASTEiJ_G0020574.1 mouse_genomes_project 14 45178602 45185005 - MGP_CASTEiJ_P0039115 Prmt5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039116.1 MGP_CASTEiJ_G0020574.1 mouse_genomes_project 14 45180768 45184963 - Prmt5 protein_coding retained_intron MGP_CASTEiJ_T0039117.1 MGP_CASTEiJ_G0020574.1 mouse_genomes_project 14 45181333 45185040 - Prmt5 protein_coding retained_intron MGP_CASTEiJ_T0039118.1 MGP_CASTEiJ_G0020574.1 mouse_genomes_project 14 45182234 45183257 - Prmt5 protein_coding processed_transcript MGP_CASTEiJ_T0039119.1 MGP_CASTEiJ_G0020574.1 mouse_genomes_project 14 45183720 45184931 - Prmt5 protein_coding processed_transcript MGP_CASTEiJ_T0040050.1 MGP_CASTEiJ_G0020896.1 mouse_genomes_project 14 98662953 98714887 + MGP_CASTEiJ_P0040050 Ndfip2 protein_coding protein_coding MGP_CASTEiJ_T0040051.1 MGP_CASTEiJ_G0020896.1 mouse_genomes_project 14 98663098 98714893 + MGP_CASTEiJ_P0040051 Ndfip2 protein_coding protein_coding MGP_CASTEiJ_T0040052.1 MGP_CASTEiJ_G0020896.1 mouse_genomes_project 14 98663198 98698061 + Ndfip2 protein_coding retained_intron MGP_CASTEiJ_T0040053.1 MGP_CASTEiJ_G0020896.1 mouse_genomes_project 14 98695394 98714520 + Ndfip2 protein_coding retained_intron MGP_CASTEiJ_T0040054.1 MGP_CASTEiJ_G0020896.1 mouse_genomes_project 14 98695791 98714520 + Ndfip2 protein_coding retained_intron MGP_CASTEiJ_T0040055.1 MGP_CASTEiJ_G0020896.1 mouse_genomes_project 14 98697662 98714520 + Ndfip2 protein_coding processed_transcript MGP_CASTEiJ_T0099402.1 MGP_CASTEiJ_G0036315.1 mouse_genomes_project 14 89434277 89434393 + Gm24043 snRNA snRNA MGP_CASTEiJ_T0100643.1 MGP_CASTEiJ_G0037556.1 mouse_genomes_project 14 93735461 93735585 - Gm24345 snoRNA snoRNA MGP_CASTEiJ_T0100604.1 MGP_CASTEiJ_G0037517.1 mouse_genomes_project 14 24021751 24021827 - Snord19 snoRNA snoRNA MGP_CASTEiJ_T0039177.1 MGP_CASTEiJ_G0020592.1 mouse_genomes_project 14 45601119 45607222 - MGP_CASTEiJ_P0039177 Slc22a17 protein_coding protein_coding MGP_CASTEiJ_T0038851.1 MGP_CASTEiJ_G0020491.1 mouse_genomes_project 14 40260597 40276525 + MGP_CASTEiJ_P0038851 Naa30 protein_coding protein_coding MGP_CASTEiJ_T0038852.1 MGP_CASTEiJ_G0020491.1 mouse_genomes_project 14 40260623 40279655 + MGP_CASTEiJ_P0038852 Naa30 protein_coding protein_coding MGP_CASTEiJ_T0038853.1 MGP_CASTEiJ_G0020491.1 mouse_genomes_project 14 40265924 40278007 + Naa30 protein_coding retained_intron MGP_CASTEiJ_T0038854.1 MGP_CASTEiJ_G0020491.1 mouse_genomes_project 14 40266550 40276888 + Naa30 protein_coding retained_intron MGP_CASTEiJ_T0099384.1 MGP_CASTEiJ_G0036297.1 mouse_genomes_project 14 40890789 40890875 + Gm22989 snRNA snRNA MGP_CASTEiJ_T0002462.1 MGP_CASTEiJ_G0002373.1 mouse_genomes_project 14 44836852 44836912 + MGP_CASTEiJ_P0002462 Traj26 TR_J_gene TR_J_gene MGP_CASTEiJ_T0098508.1 MGP_CASTEiJ_G0035439.1 mouse_genomes_project 14 67453743 67453835 - Gm24876 rRNA rRNA MGP_CASTEiJ_T0002427.1 MGP_CASTEiJ_G0002342.1 mouse_genomes_project 14 44769190 44769241 + MGP_CASTEiJ_P0002427 Trdj1 TR_J_gene TR_J_gene MGP_CASTEiJ_T0006523.1 MGP_CASTEiJ_G0005405.1 mouse_genomes_project 14 43205187 43207599 - Gm16617 lincRNA lincRNA MGP_CASTEiJ_T0003440.1 MGP_CASTEiJ_G0003136.1 mouse_genomes_project 14 47457225 47470454 - Gm16573 antisense antisense MGP_CASTEiJ_T0003441.1 MGP_CASTEiJ_G0003136.1 mouse_genomes_project 14 47460740 47470470 - Gm16573 antisense antisense MGP_CASTEiJ_T0003442.1 MGP_CASTEiJ_G0003136.1 mouse_genomes_project 14 47467429 47470470 - Gm16573 antisense antisense MGP_CASTEiJ_T0006531.1 MGP_CASTEiJ_G0005412.1 mouse_genomes_project 14 52775261 52776403 - Gm27010 lincRNA lincRNA MGP_CASTEiJ_T0039495.1 MGP_CASTEiJ_G0020696.1 mouse_genomes_project 14 52356067 52396070 - MGP_CASTEiJ_P0039495 Sgcg protein_coding protein_coding MGP_CASTEiJ_T0039496.1 MGP_CASTEiJ_G0020696.1 mouse_genomes_project 14 52356452 52396004 - MGP_CASTEiJ_P0039496 Sgcg protein_coding protein_coding MGP_CASTEiJ_T0039497.1 MGP_CASTEiJ_G0020696.1 mouse_genomes_project 14 52358807 52368468 - MGP_CASTEiJ_P0039497 Sgcg protein_coding protein_coding MGP_CASTEiJ_T0039068.1 MGP_CASTEiJ_G0020563.1 mouse_genomes_project 14 43705621 43710376 - MGP_CASTEiJ_P0039068 Olfr1508 protein_coding protein_coding MGP_CASTEiJ_T0039069.1 MGP_CASTEiJ_G0020563.1 mouse_genomes_project 14 43705976 43710410 - MGP_CASTEiJ_P0039069 Olfr1508 protein_coding protein_coding MGP_CASTEiJ_T0039070.1 MGP_CASTEiJ_G0020563.1 mouse_genomes_project 14 43706444 43710005 - MGP_CASTEiJ_P0039070 Olfr1508 protein_coding protein_coding MGP_CASTEiJ_T0002575.1 MGP_CASTEiJ_G0002475.1 mouse_genomes_project 14 44424591 44425599 + MGP_CASTEiJ_P0002575 B230359F08Rik TR_V_gene TR_V_gene MGP_CASTEiJ_T0002520.1 MGP_CASTEiJ_G0002425.1 mouse_genomes_project 14 43848757 43849202 + MGP_CASTEiJ_P0002520 Trav6-1 TR_V_gene TR_V_gene MGP_CASTEiJ_T0038098.1 MGP_CASTEiJ_G0020283.1 mouse_genomes_project 14 12162199 12163073 - MGP_CASTEiJ_P0038098 Gm9637 protein_coding protein_coding MGP_CASTEiJ_T0099368.1 MGP_CASTEiJ_G0036281.1 mouse_genomes_project 14 6416616 6416713 + Gm25964 snRNA snRNA MGP_CASTEiJ_T0009728.1 MGP_CASTEiJ_G0007916.1 mouse_genomes_project 14 48758876 48758940 + Mir3077 miRNA miRNA MGP_CASTEiJ_T0009758.1 MGP_CASTEiJ_G0007946.1 mouse_genomes_project 14 112429516 112429741 - miRNA miRNA MGP_CASTEiJ_T0012669.1 MGP_CASTEiJ_G0010832.1 mouse_genomes_project 14 93026046 93026343 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012645.1 MGP_CASTEiJ_G0010808.1 mouse_genomes_project 14 50515763 50518732 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003450.1 MGP_CASTEiJ_G0003142.1 mouse_genomes_project 14 54914086 54918904 - Gm15918 antisense antisense MGP_CASTEiJ_T0038876.1 MGP_CASTEiJ_G0020504.1 mouse_genomes_project 14 41384090 41385084 - MGP_CASTEiJ_P0038876 Olfr733 protein_coding protein_coding MGP_CASTEiJ_T0006529.1 MGP_CASTEiJ_G0005410.1 mouse_genomes_project 14 48982010 48986387 + 3110083C13Rik lincRNA lincRNA MGP_CASTEiJ_T0039128.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45314951 45326413 - MGP_CASTEiJ_P0039128 Acin1 protein_coding protein_coding MGP_CASTEiJ_T0039129.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45314951 45326492 - MGP_CASTEiJ_P0039129 Acin1 protein_coding protein_coding MGP_CASTEiJ_T0039130.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45314951 45326464 - MGP_CASTEiJ_P0039130 Acin1 protein_coding protein_coding MGP_CASTEiJ_T0039131.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45314951 45363976 - MGP_CASTEiJ_P0039131 Acin1 protein_coding protein_coding MGP_CASTEiJ_T0039132.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45314952 45363661 - MGP_CASTEiJ_P0039132 Acin1 protein_coding protein_coding MGP_CASTEiJ_T0039133.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45314952 45326498 - MGP_CASTEiJ_P0039133 Acin1 protein_coding protein_coding MGP_CASTEiJ_T0039134.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45314957 45326479 - MGP_CASTEiJ_P0039134 Acin1 protein_coding protein_coding MGP_CASTEiJ_T0039135.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45315519 45326035 - MGP_CASTEiJ_P0039135 Acin1 protein_coding protein_coding MGP_CASTEiJ_T0039136.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45315519 45363976 - MGP_CASTEiJ_P0039136 Acin1 protein_coding protein_coding MGP_CASTEiJ_T0039137.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45315693 45317328 - Acin1 protein_coding retained_intron MGP_CASTEiJ_T0039138.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45316079 45317002 - MGP_CASTEiJ_P0039138 Acin1 protein_coding protein_coding MGP_CASTEiJ_T0039139.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45317046 45318659 - Acin1 protein_coding retained_intron MGP_CASTEiJ_T0039140.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45317518 45321340 - Acin1 protein_coding retained_intron MGP_CASTEiJ_T0039141.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45317789 45318840 - Acin1 protein_coding retained_intron MGP_CASTEiJ_T0039142.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45318003 45323036 - Acin1 protein_coding processed_transcript MGP_CASTEiJ_T0039143.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45318095 45321104 - Acin1 protein_coding retained_intron MGP_CASTEiJ_T0039144.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45318531 45326482 - MGP_CASTEiJ_P0039144 Acin1 protein_coding protein_coding MGP_CASTEiJ_T0039145.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45319348 45322670 - Acin1 protein_coding processed_transcript MGP_CASTEiJ_T0039146.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45323560 45326478 - Acin1 protein_coding processed_transcript MGP_CASTEiJ_T0039147.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45323613 45326478 - Acin1 protein_coding processed_transcript MGP_CASTEiJ_T0039148.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45324175 45339005 - Acin1 protein_coding retained_intron MGP_CASTEiJ_T0039149.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45324289 45326488 - Acin1 protein_coding retained_intron MGP_CASTEiJ_T0039150.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45337103 45339976 - Acin1 protein_coding retained_intron MGP_CASTEiJ_T0039151.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45340424 45363105 - MGP_CASTEiJ_P0039151 Acin1 protein_coding protein_coding MGP_CASTEiJ_T0039152.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45350912 45363678 - Acin1 protein_coding processed_transcript MGP_CASTEiJ_T0039153.1 MGP_CASTEiJ_G0020583.1 mouse_genomes_project 14 45354451 45363660 - Acin1 protein_coding retained_intron MGP_CASTEiJ_T0039327.1 MGP_CASTEiJ_G0020627.1 mouse_genomes_project 14 46465248 46471567 - MGP_CASTEiJ_P0039327 Rabggta protein_coding protein_coding MGP_CASTEiJ_T0039328.1 MGP_CASTEiJ_G0020627.1 mouse_genomes_project 14 46465252 46471545 - MGP_CASTEiJ_P0039328 Rabggta protein_coding protein_coding MGP_CASTEiJ_T0039329.1 MGP_CASTEiJ_G0020627.1 mouse_genomes_project 14 46465700 46471626 - MGP_CASTEiJ_P0039329 Rabggta protein_coding protein_coding MGP_CASTEiJ_T0002477.1 MGP_CASTEiJ_G0002388.1 mouse_genomes_project 14 44851574 44851632 + MGP_CASTEiJ_P0002477 Traj9 TR_J_gene TR_J_gene MGP_CASTEiJ_T0012604.1 MGP_CASTEiJ_G0010767.1 mouse_genomes_project 14 11275996 11278068 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100649.1 MGP_CASTEiJ_G0037562.1 mouse_genomes_project 14 100215167 100215294 + Gm23437 snoRNA snoRNA MGP_CASTEiJ_T0006547.1 MGP_CASTEiJ_G0005423.1 mouse_genomes_project 14 66813346 66813989 - Gm15628 lincRNA lincRNA MGP_CASTEiJ_T0000885.1 MGP_CASTEiJ_G0000824.1 mouse_genomes_project 14 62916202 62916742 - TEC TEC MGP_CASTEiJ_T0102079.1 MGP_CASTEiJ_G0038804.1 mouse_genomes_project 14 42251269 42251702 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0038141.1 MGP_CASTEiJ_G0020299.1 mouse_genomes_project 14 13226905 13300024 - MGP_CASTEiJ_P0038141 Usp54 protein_coding protein_coding MGP_CASTEiJ_T0038142.1 MGP_CASTEiJ_G0020299.1 mouse_genomes_project 14 13226905 13287704 - MGP_CASTEiJ_P0038142 Usp54 protein_coding protein_coding MGP_CASTEiJ_T0038143.1 MGP_CASTEiJ_G0020299.1 mouse_genomes_project 14 13255498 13265307 - MGP_CASTEiJ_P0038143 Usp54 protein_coding protein_coding MGP_CASTEiJ_T0038144.1 MGP_CASTEiJ_G0020299.1 mouse_genomes_project 14 13259488 13285811 - Usp54 protein_coding retained_intron MGP_CASTEiJ_T0038145.1 MGP_CASTEiJ_G0020299.1 mouse_genomes_project 14 13261543 13300024 - Usp54 protein_coding retained_intron MGP_CASTEiJ_T0039216.1 MGP_CASTEiJ_G0020604.1 mouse_genomes_project 14 45947385 45962642 + MGP_CASTEiJ_P0039216 Dhrs2 protein_coding protein_coding MGP_CASTEiJ_T0039217.1 MGP_CASTEiJ_G0020604.1 mouse_genomes_project 14 45954518 45962455 + MGP_CASTEiJ_P0039217 Dhrs2 protein_coding protein_coding MGP_CASTEiJ_T0039525.1 MGP_CASTEiJ_G0020710.1 mouse_genomes_project 14 54233195 54241362 - MGP_CASTEiJ_P0039525 Defb48 protein_coding protein_coding MGP_CASTEiJ_T0102082.1 MGP_CASTEiJ_G0038807.1 mouse_genomes_project 14 119357186 119357471 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0039821.1 MGP_CASTEiJ_G0020816.1 mouse_genomes_project 14 64827211 64832573 + MGP_CASTEiJ_P0039821 Lpar6 protein_coding protein_coding MGP_CASTEiJ_T0039232.1 MGP_CASTEiJ_G0020610.1 mouse_genomes_project 14 46302489 46302956 - MGP_CASTEiJ_P0039232 A730061H03Rik protein_coding protein_coding MGP_CASTEiJ_T0003472.1 MGP_CASTEiJ_G0003157.1 mouse_genomes_project 14 117006074 117009789 - 1700108J01Rik antisense antisense MGP_CASTEiJ_T0039539.1 MGP_CASTEiJ_G0020717.1 mouse_genomes_project 14 54457128 54467887 - MGP_CASTEiJ_P0039539 Neil2 protein_coding protein_coding MGP_CASTEiJ_T0002455.1 MGP_CASTEiJ_G0002366.1 mouse_genomes_project 14 44826862 44826919 + MGP_CASTEiJ_P0002455 Traj33 TR_J_gene TR_J_gene MGP_CASTEiJ_T0002463.1 MGP_CASTEiJ_G0002374.1 mouse_genomes_project 14 44837195 44837252 + MGP_CASTEiJ_P0002463 Traj25 TR_J_gene TR_J_gene MGP_CASTEiJ_T0039621.1 MGP_CASTEiJ_G0020750.1 mouse_genomes_project 14 57529049 57572415 - MGP_CASTEiJ_P0039621 Ephx2 protein_coding protein_coding MGP_CASTEiJ_T0039794.1 MGP_CASTEiJ_G0020813.1 mouse_genomes_project 14 64610985 64630959 - MGP_CASTEiJ_P0039794 Cysltr2 protein_coding protein_coding MGP_CASTEiJ_T0039795.1 MGP_CASTEiJ_G0020813.1 mouse_genomes_project 14 64610985 64630959 - MGP_CASTEiJ_P0039795 Cysltr2 protein_coding protein_coding MGP_CASTEiJ_T0040057.1 MGP_CASTEiJ_G0020898.1 mouse_genomes_project 14 99527974 99528380 - MGP_CASTEiJ_P0040057 Gm4775 protein_coding protein_coding MGP_CASTEiJ_T0039662.1 MGP_CASTEiJ_G0020762.1 mouse_genomes_project 14 58745845 58956799 + MGP_CASTEiJ_P0039662 Ebf2 protein_coding protein_coding MGP_CASTEiJ_T0039663.1 MGP_CASTEiJ_G0020762.1 mouse_genomes_project 14 58746139 58957961 + MGP_CASTEiJ_P0039663 Ebf2 protein_coding protein_coding MGP_CASTEiJ_T0039664.1 MGP_CASTEiJ_G0020762.1 mouse_genomes_project 14 58746156 58749058 + Ebf2 protein_coding retained_intron MGP_CASTEiJ_T0039665.1 MGP_CASTEiJ_G0020762.1 mouse_genomes_project 14 58747191 58955710 + MGP_CASTEiJ_P0039665 Ebf2 protein_coding protein_coding MGP_CASTEiJ_T0038649.1 MGP_CASTEiJ_G0020429.1 mouse_genomes_project 14 27407215 27410011 + Syt15 protein_coding retained_intron MGP_CASTEiJ_T0038650.1 MGP_CASTEiJ_G0020429.1 mouse_genomes_project 14 27407665 27415380 + MGP_CASTEiJ_P0038650 Syt15 protein_coding protein_coding MGP_CASTEiJ_T0038651.1 MGP_CASTEiJ_G0020429.1 mouse_genomes_project 14 27407666 27418080 + MGP_CASTEiJ_P0038651 Syt15 protein_coding protein_coding MGP_CASTEiJ_T0038652.1 MGP_CASTEiJ_G0020429.1 mouse_genomes_project 14 27407739 27452026 + MGP_CASTEiJ_P0038652 Syt15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038327.1 MGP_CASTEiJ_G0020343.1 mouse_genomes_project 14 19344549 19366012 + MGP_CASTEiJ_P0038327 Arf4 protein_coding protein_coding MGP_CASTEiJ_T0038328.1 MGP_CASTEiJ_G0020343.1 mouse_genomes_project 14 19344701 19365557 + MGP_CASTEiJ_P0038328 Arf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038329.1 MGP_CASTEiJ_G0020343.1 mouse_genomes_project 14 19344728 19365564 + Arf4 protein_coding processed_transcript MGP_CASTEiJ_T0038330.1 MGP_CASTEiJ_G0020343.1 mouse_genomes_project 14 19344822 19365570 + MGP_CASTEiJ_P0038330 Arf4 protein_coding protein_coding MGP_CASTEiJ_T0038331.1 MGP_CASTEiJ_G0020343.1 mouse_genomes_project 14 19361742 19362592 + Arf4 protein_coding retained_intron MGP_CASTEiJ_T0038332.1 MGP_CASTEiJ_G0020343.1 mouse_genomes_project 14 19361862 19373814 + MGP_CASTEiJ_P0038332 Arf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006562.1 MGP_CASTEiJ_G0005436.1 mouse_genomes_project 14 118749317 118773707 + 1700024B18Rik lincRNA lincRNA MGP_CASTEiJ_T0002467.1 MGP_CASTEiJ_G0002378.1 mouse_genomes_project 14 44841172 44841229 + MGP_CASTEiJ_P0002467 Traj21 TR_J_gene TR_J_gene MGP_CASTEiJ_T0039572.1 MGP_CASTEiJ_G0020730.1 mouse_genomes_project 14 55430934 55440125 + MGP_CASTEiJ_P0039572 Prss52 protein_coding protein_coding MGP_CASTEiJ_T0016679.1 MGP_CASTEiJ_G0014595.1 mouse_genomes_project 14 109749073 109762556 - 4930505G20Rik processed_transcript processed_transcript MGP_CASTEiJ_T0003469.1 MGP_CASTEiJ_G0003156.1 mouse_genomes_project 14 116626700 116628223 - 1810041H14Rik antisense antisense MGP_CASTEiJ_T0003470.1 MGP_CASTEiJ_G0003156.1 mouse_genomes_project 14 116626786 116628470 - 1810041H14Rik antisense antisense MGP_CASTEiJ_T0003471.1 MGP_CASTEiJ_G0003156.1 mouse_genomes_project 14 116626834 116629375 - 1810041H14Rik antisense antisense MGP_CASTEiJ_T0012653.1 MGP_CASTEiJ_G0010816.1 mouse_genomes_project 14 62225146 62225493 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040033.1 MGP_CASTEiJ_G0020890.1 mouse_genomes_project 14 96846740 96951983 + MGP_CASTEiJ_P0040033 Scel protein_coding protein_coding MGP_CASTEiJ_T0040034.1 MGP_CASTEiJ_G0020890.1 mouse_genomes_project 14 96862529 96951035 + MGP_CASTEiJ_P0040034 Scel protein_coding unknown_likely_coding MGP_CASTEiJ_T0099391.1 MGP_CASTEiJ_G0036304.1 mouse_genomes_project 14 48793115 48793262 - Gm22738 snRNA snRNA MGP_CASTEiJ_T0100644.1 MGP_CASTEiJ_G0037557.1 mouse_genomes_project 14 94539170 94539304 + Gm26173 snoRNA snoRNA MGP_CASTEiJ_T0006559.1 MGP_CASTEiJ_G0005433.1 mouse_genomes_project 14 113249348 113258549 - Gm27198 lincRNA lincRNA MGP_CASTEiJ_T0039123.1 MGP_CASTEiJ_G0020578.1 mouse_genomes_project 14 45282990 45286880 - MGP_CASTEiJ_P0039123 Psmb5 protein_coding protein_coding MGP_CASTEiJ_T0006551.1 MGP_CASTEiJ_G0005426.1 mouse_genomes_project 14 71804339 71929557 + Gm6999 lincRNA lincRNA MGP_CASTEiJ_T0006530.1 MGP_CASTEiJ_G0005411.1 mouse_genomes_project 14 51592456 51709279 + Gm29266 lincRNA lincRNA MGP_CASTEiJ_T0002551.1 MGP_CASTEiJ_G0002453.1 mouse_genomes_project 14 44169176 44169792 + MGP_CASTEiJ_P0002551 TR_V_gene TR_V_gene MGP_CASTEiJ_T0016681.1 MGP_CASTEiJ_G0014597.1 mouse_genomes_project 14 112721302 112723830 + Gm4675 processed_transcript processed_transcript MGP_CASTEiJ_T0016682.1 MGP_CASTEiJ_G0014597.1 mouse_genomes_project 14 112721950 112747340 + Gm4675 processed_transcript processed_transcript MGP_CASTEiJ_T0016683.1 MGP_CASTEiJ_G0014597.1 mouse_genomes_project 14 112739883 112740426 + Gm4675 processed_transcript processed_transcript MGP_CASTEiJ_T0006492.1 MGP_CASTEiJ_G0005385.1 mouse_genomes_project 14 19039511 19072711 + 4933413J09Rik lincRNA lincRNA MGP_CASTEiJ_T0006493.1 MGP_CASTEiJ_G0005385.1 mouse_genomes_project 14 19040502 19092267 + 4933413J09Rik lincRNA lincRNA MGP_CASTEiJ_T0006494.1 MGP_CASTEiJ_G0005385.1 mouse_genomes_project 14 19040535 19064739 + 4933413J09Rik lincRNA lincRNA MGP_CASTEiJ_T0006495.1 MGP_CASTEiJ_G0005385.1 mouse_genomes_project 14 19045605 19065862 + 4933413J09Rik lincRNA lincRNA MGP_CASTEiJ_T0006496.1 MGP_CASTEiJ_G0005385.1 mouse_genomes_project 14 19047348 19065760 + 4933413J09Rik lincRNA lincRNA MGP_CASTEiJ_T0006497.1 MGP_CASTEiJ_G0005385.1 mouse_genomes_project 14 19047348 19088541 + 4933413J09Rik lincRNA lincRNA MGP_CASTEiJ_T0002415.1 MGP_CASTEiJ_G0002332.1 mouse_genomes_project 14 44862755 44866430 + MGP_CASTEiJ_P0002415 Trac TR_C_gene TR_C_gene MGP_CASTEiJ_T0002416.1 MGP_CASTEiJ_G0002332.1 mouse_genomes_project 14 44862755 44865358 + MGP_CASTEiJ_P0002416 Trac TR_C_gene TR_C_gene MGP_CASTEiJ_T0009724.1 MGP_CASTEiJ_G0007912.1 mouse_genomes_project 14 45315840 45315902 - Mir6948 miRNA miRNA MGP_CASTEiJ_T0038153.1 MGP_CASTEiJ_G0020304.1 mouse_genomes_project 14 13389230 13390486 + MGP_CASTEiJ_P0038153 Chchd1 protein_coding protein_coding MGP_CASTEiJ_T0039847.1 MGP_CASTEiJ_G0020825.1 mouse_genomes_project 14 66756349 66808005 - MGP_CASTEiJ_P0039847 Lrrc63 protein_coding protein_coding MGP_CASTEiJ_T0009722.1 MGP_CASTEiJ_G0007910.1 mouse_genomes_project 14 40670075 40670180 - Gm22949 miRNA miRNA MGP_CASTEiJ_T0040113.1 MGP_CASTEiJ_G0020920.1 mouse_genomes_project 14 115969250 116069913 - MGP_CASTEiJ_P0040113 Stk24 protein_coding protein_coding MGP_CASTEiJ_T0040114.1 MGP_CASTEiJ_G0020920.1 mouse_genomes_project 14 115973685 116069549 - MGP_CASTEiJ_P0040114 Stk24 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006517.1 MGP_CASTEiJ_G0005401.1 mouse_genomes_project 14 41939780 41940018 - Rprl1 lincRNA lincRNA MGP_CASTEiJ_T0039594.1 MGP_CASTEiJ_G0020739.1 mouse_genomes_project 14 56777988 56804029 - MGP_CASTEiJ_P0039594 Pnoc protein_coding protein_coding MGP_CASTEiJ_T0038498.1 MGP_CASTEiJ_G0020382.1 mouse_genomes_project 14 24219469 24222826 + MGP_CASTEiJ_P0038498 Tnnc1 protein_coding protein_coding MGP_CASTEiJ_T0038499.1 MGP_CASTEiJ_G0020382.1 mouse_genomes_project 14 24219487 24222733 + MGP_CASTEiJ_P0038499 Tnnc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038500.1 MGP_CASTEiJ_G0020382.1 mouse_genomes_project 14 24219489 24222103 + Tnnc1 protein_coding retained_intron MGP_CASTEiJ_T0016628.1 MGP_CASTEiJ_G0014578.1 mouse_genomes_project 14 38984 90676 - Gm10044 processed_transcript antisense MGP_CASTEiJ_T0016630.1 MGP_CASTEiJ_G0014578.1 mouse_genomes_project 14 51435 90600 - Gm10044 processed_transcript antisense MGP_CASTEiJ_T0016631.1 MGP_CASTEiJ_G0014578.1 mouse_genomes_project 14 59898 72783 - Gm10044 processed_transcript antisense MGP_CASTEiJ_T0016632.1 MGP_CASTEiJ_G0014578.1 mouse_genomes_project 14 68418 72853 - Gm10044 processed_transcript retained_intron MGP_CASTEiJ_T0016633.1 MGP_CASTEiJ_G0014578.1 mouse_genomes_project 14 68651 90578 - Gm10044 processed_transcript antisense MGP_CASTEiJ_T0038293.1 MGP_CASTEiJ_G0020336.1 mouse_genomes_project 14 18890632 18904503 + MGP_CASTEiJ_P0038293 protein_coding protein_coding MGP_CASTEiJ_T0038295.1 MGP_CASTEiJ_G0020336.1 mouse_genomes_project 14 18890684 18904494 + MGP_CASTEiJ_P0038295 protein_coding protein_coding MGP_CASTEiJ_T0006491.1 MGP_CASTEiJ_G0005384.1 mouse_genomes_project 14 18458332 18464277 - Gm26772 lincRNA lincRNA MGP_CASTEiJ_T0098835.1 MGP_CASTEiJ_G0035762.1 mouse_genomes_project 14 17119598 17124836 - Gm17105 sense_intronic sense_intronic MGP_CASTEiJ_T0006483.1 MGP_CASTEiJ_G0005378.1 mouse_genomes_project 14 16121803 16123154 - A830039N20Rik lincRNA lincRNA MGP_CASTEiJ_T0099388.1 MGP_CASTEiJ_G0036301.1 mouse_genomes_project 14 45245737 45245845 + Gm24705 snRNA snRNA MGP_CASTEiJ_T0039409.1 MGP_CASTEiJ_G0020671.1 mouse_genomes_project 14 48576151 48690611 - MGP_CASTEiJ_P0039409 Lats2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039412.1 MGP_CASTEiJ_G0020671.1 mouse_genomes_project 14 48626792 48690631 - MGP_CASTEiJ_P0039412 Lats2 protein_coding protein_coding MGP_CASTEiJ_T0039413.1 MGP_CASTEiJ_G0020671.1 mouse_genomes_project 14 48628244 48690629 - MGP_CASTEiJ_P0039413 Lats2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039414.1 MGP_CASTEiJ_G0020671.1 mouse_genomes_project 14 48630291 48690613 - MGP_CASTEiJ_P0039414 Lats2 protein_coding protein_coding MGP_CASTEiJ_T0039415.1 MGP_CASTEiJ_G0020671.1 mouse_genomes_project 14 48633924 48638615 - MGP_CASTEiJ_P0039415 Lats2 protein_coding protein_coding MGP_CASTEiJ_T0039416.1 MGP_CASTEiJ_G0020671.1 mouse_genomes_project 14 48642357 48705262 - MGP_CASTEiJ_P0039416 Lats2 protein_coding protein_coding MGP_CASTEiJ_T0039417.1 MGP_CASTEiJ_G0020671.1 mouse_genomes_project 14 48661904 48676617 - MGP_CASTEiJ_P0039417 Lats2 protein_coding protein_coding MGP_CASTEiJ_T0039418.1 MGP_CASTEiJ_G0020671.1 mouse_genomes_project 14 48661904 48676617 - MGP_CASTEiJ_P0039418 Lats2 protein_coding protein_coding MGP_CASTEiJ_T0039419.1 MGP_CASTEiJ_G0020671.1 mouse_genomes_project 14 48676496 48689160 - MGP_CASTEiJ_P0039419 Lats2 protein_coding protein_coding MGP_CASTEiJ_T0039420.1 MGP_CASTEiJ_G0020671.1 mouse_genomes_project 14 48676569 48691086 - Lats2 protein_coding processed_transcript MGP_CASTEiJ_T0038156.1 MGP_CASTEiJ_G0020307.1 mouse_genomes_project 14 13420878 13484139 - MGP_CASTEiJ_P0038156 Camk2g protein_coding unknown_likely_coding MGP_CASTEiJ_T0038157.1 MGP_CASTEiJ_G0020307.1 mouse_genomes_project 14 13420883 13484262 - MGP_CASTEiJ_P0038157 Camk2g protein_coding protein_coding MGP_CASTEiJ_T0038158.1 MGP_CASTEiJ_G0020307.1 mouse_genomes_project 14 13420883 13484262 - MGP_CASTEiJ_P0038158 Camk2g protein_coding protein_coding MGP_CASTEiJ_T0038159.1 MGP_CASTEiJ_G0020307.1 mouse_genomes_project 14 13420883 13484262 - MGP_CASTEiJ_P0038159 Camk2g protein_coding protein_coding MGP_CASTEiJ_T0039165.1 MGP_CASTEiJ_G0020589.1 mouse_genomes_project 14 45576554 45581178 + MGP_CASTEiJ_P0039165 Bcl2l2 protein_coding protein_coding MGP_CASTEiJ_T0039166.1 MGP_CASTEiJ_G0020589.1 mouse_genomes_project 14 45576558 45577235 + Bcl2l2 protein_coding retained_intron MGP_CASTEiJ_T0039168.1 MGP_CASTEiJ_G0020589.1 mouse_genomes_project 14 45576633 45578707 + MGP_CASTEiJ_P0039168 Bcl2l2 protein_coding protein_coding MGP_CASTEiJ_T0039169.1 MGP_CASTEiJ_G0020589.1 mouse_genomes_project 14 45576684 45581039 + MGP_CASTEiJ_P0039169 Bcl2l2 protein_coding protein_coding MGP_CASTEiJ_T0012674.1 MGP_CASTEiJ_G0010837.1 mouse_genomes_project 14 115567783 115599376 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100642.1 MGP_CASTEiJ_G0037555.1 mouse_genomes_project 14 93620981 93621113 + Gm26367 snoRNA snoRNA MGP_CASTEiJ_T0006549.1 MGP_CASTEiJ_G0005425.1 mouse_genomes_project 14 69339641 69370617 - Gm6994 lincRNA lincRNA MGP_CASTEiJ_T0006550.1 MGP_CASTEiJ_G0005425.1 mouse_genomes_project 14 69340262 69363214 - Gm6994 lincRNA lincRNA MGP_CASTEiJ_T0011048.1 MGP_CASTEiJ_G0009236.1 mouse_genomes_project 14 56581017 56581093 - Gm27263 misc_RNA misc_RNA MGP_CASTEiJ_T0002506.1 MGP_CASTEiJ_G0002415.1 mouse_genomes_project 14 44852099 44852136 + TR_J_pseudogene TR_J_pseudogene MGP_CASTEiJ_T0012605.1 MGP_CASTEiJ_G0010768.1 mouse_genomes_project 14 11399311 11400481 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039981.1 MGP_CASTEiJ_G0020877.1 mouse_genomes_project 14 92439641 92456125 + MGP_CASTEiJ_P0039981 Klf5 protein_coding protein_coding MGP_CASTEiJ_T0039192.1 MGP_CASTEiJ_G0020600.1 mouse_genomes_project 14 45759813 45806729 + MGP_CASTEiJ_P0039192 Thtpa protein_coding protein_coding MGP_CASTEiJ_T0039193.1 MGP_CASTEiJ_G0020600.1 mouse_genomes_project 14 45760885 45807116 + Thtpa protein_coding processed_transcript MGP_CASTEiJ_T0039194.1 MGP_CASTEiJ_G0020600.1 mouse_genomes_project 14 45761421 45808190 + MGP_CASTEiJ_P0039194 Thtpa protein_coding protein_coding MGP_CASTEiJ_T0039199.1 MGP_CASTEiJ_G0020600.1 mouse_genomes_project 14 45803987 45808190 + MGP_CASTEiJ_P0039199 Thtpa protein_coding protein_coding MGP_CASTEiJ_T0002447.1 MGP_CASTEiJ_G0002358.1 mouse_genomes_project 14 44817264 44817328 + MGP_CASTEiJ_P0002447 Traj42 TR_J_gene TR_J_gene MGP_CASTEiJ_T0039769.1 MGP_CASTEiJ_G0020805.1 mouse_genomes_project 14 62097274 62126417 - MGP_CASTEiJ_P0039769 Dmtn protein_coding protein_coding MGP_CASTEiJ_T0039770.1 MGP_CASTEiJ_G0020805.1 mouse_genomes_project 14 62097275 62123331 - MGP_CASTEiJ_P0039770 Dmtn protein_coding protein_coding MGP_CASTEiJ_T0039771.1 MGP_CASTEiJ_G0020805.1 mouse_genomes_project 14 62097275 62133608 - MGP_CASTEiJ_P0039771 Dmtn protein_coding protein_coding MGP_CASTEiJ_T0099390.1 MGP_CASTEiJ_G0036303.1 mouse_genomes_project 14 47732589 47732648 - Gm22218 snRNA snRNA MGP_CASTEiJ_T0038855.1 MGP_CASTEiJ_G0020492.1 mouse_genomes_project 14 40303058 40329800 - MGP_CASTEiJ_P0038855 1700011H14Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0038856.1 MGP_CASTEiJ_G0020492.1 mouse_genomes_project 14 40310880 40329972 - MGP_CASTEiJ_P0038856 1700011H14Rik protein_coding protein_coding MGP_CASTEiJ_T0038857.1 MGP_CASTEiJ_G0020492.1 mouse_genomes_project 14 40311114 40329940 - MGP_CASTEiJ_P0038857 1700011H14Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038858.1 MGP_CASTEiJ_G0020492.1 mouse_genomes_project 14 40317325 40329940 - MGP_CASTEiJ_P0038858 1700011H14Rik protein_coding protein_coding MGP_CASTEiJ_T0039936.1 MGP_CASTEiJ_G0020859.1 mouse_genomes_project 14 71602410 71629497 - MGP_CASTEiJ_P0039936 Lect1 protein_coding protein_coding MGP_CASTEiJ_T0039937.1 MGP_CASTEiJ_G0020859.1 mouse_genomes_project 14 71602413 71629589 - MGP_CASTEiJ_P0039937 Lect1 protein_coding protein_coding MGP_CASTEiJ_T0039938.1 MGP_CASTEiJ_G0020859.1 mouse_genomes_project 14 71602536 71606930 - Lect1 protein_coding retained_intron MGP_CASTEiJ_T0039939.1 MGP_CASTEiJ_G0020859.1 mouse_genomes_project 14 71606211 71610276 - Lect1 protein_coding processed_transcript MGP_CASTEiJ_T0039940.1 MGP_CASTEiJ_G0020859.1 mouse_genomes_project 14 71606721 71610425 - Lect1 protein_coding retained_intron MGP_CASTEiJ_T0002434.1 MGP_CASTEiJ_G0002347.1 mouse_genomes_project 14 44800840 44800903 + MGP_CASTEiJ_P0002434 Traj56 TR_J_gene TR_J_gene MGP_CASTEiJ_T0039688.1 MGP_CASTEiJ_G0020771.1 mouse_genomes_project 14 60203036 60254686 - MGP_CASTEiJ_P0039688 Adam28 protein_coding protein_coding MGP_CASTEiJ_T0039689.1 MGP_CASTEiJ_G0020771.1 mouse_genomes_project 14 60203901 60254686 - MGP_CASTEiJ_P0039689 Adam28 protein_coding protein_coding MGP_CASTEiJ_T0098838.1 MGP_CASTEiJ_G0035765.1 mouse_genomes_project 14 115931660 115936943 + B930095G15Rik sense_intronic sense_intronic MGP_CASTEiJ_T0002541.1 MGP_CASTEiJ_G0002444.1 mouse_genomes_project 14 44110649 44111146 + MGP_CASTEiJ_P0002541 TR_V_gene TR_V_gene MGP_CASTEiJ_T0100626.1 MGP_CASTEiJ_G0037539.1 mouse_genomes_project 14 61908770 61908880 - Gm22725 snoRNA snoRNA MGP_CASTEiJ_T0039776.1 MGP_CASTEiJ_G0020809.1 mouse_genomes_project 14 62261754 62269195 + Dok2 protein_coding processed_transcript MGP_CASTEiJ_T0039777.1 MGP_CASTEiJ_G0020809.1 mouse_genomes_project 14 62261767 62267800 + Dok2 protein_coding processed_transcript MGP_CASTEiJ_T0039778.1 MGP_CASTEiJ_G0020809.1 mouse_genomes_project 14 62268894 62271616 + Dok2 protein_coding processed_transcript MGP_CASTEiJ_T0039779.1 MGP_CASTEiJ_G0020809.1 mouse_genomes_project 14 62269935 62274090 + MGP_CASTEiJ_P0039779 Dok2 protein_coding protein_coding MGP_CASTEiJ_T0039780.1 MGP_CASTEiJ_G0020809.1 mouse_genomes_project 14 62271482 62272473 + Dok2 protein_coding retained_intron MGP_CASTEiJ_T0039781.1 MGP_CASTEiJ_G0020809.1 mouse_genomes_project 14 62271781 62273156 + Dok2 protein_coding processed_transcript MGP_CASTEiJ_T0039782.1 MGP_CASTEiJ_G0020809.1 mouse_genomes_project 14 62271966 62273165 + Dok2 protein_coding processed_transcript MGP_CASTEiJ_T0039783.1 MGP_CASTEiJ_G0020809.1 mouse_genomes_project 14 62272313 62273199 + Dok2 protein_coding retained_intron MGP_CASTEiJ_T0002456.1 MGP_CASTEiJ_G0002367.1 mouse_genomes_project 14 44827576 44827642 + MGP_CASTEiJ_P0002456 Traj32 TR_J_gene TR_J_gene MGP_CASTEiJ_T0038353.1 MGP_CASTEiJ_G0020353.1 mouse_genomes_project 14 20262256 20289397 - MGP_CASTEiJ_P0038353 Ccdc66 protein_coding protein_coding MGP_CASTEiJ_T0040078.1 MGP_CASTEiJ_G0020910.1 mouse_genomes_project 14 113309679 113426074 + MGP_CASTEiJ_P0040078 Cldn10 protein_coding protein_coding MGP_CASTEiJ_T0040079.1 MGP_CASTEiJ_G0020910.1 mouse_genomes_project 14 113309689 113426075 + MGP_CASTEiJ_P0040079 Cldn10 protein_coding protein_coding MGP_CASTEiJ_T0040080.1 MGP_CASTEiJ_G0020910.1 mouse_genomes_project 14 113400603 113427036 + MGP_CASTEiJ_P0040080 Cldn10 protein_coding protein_coding MGP_CASTEiJ_T0009732.1 MGP_CASTEiJ_G0007920.1 mouse_genomes_project 14 54079705 54079842 + Mir8098 miRNA miRNA MGP_CASTEiJ_T0039421.1 MGP_CASTEiJ_G0020672.1 mouse_genomes_project 14 48758632 48765415 + MGP_CASTEiJ_P0039421 Sap18 protein_coding protein_coding MGP_CASTEiJ_T0039422.1 MGP_CASTEiJ_G0020672.1 mouse_genomes_project 14 48758670 48765405 + MGP_CASTEiJ_P0039422 Sap18 protein_coding protein_coding MGP_CASTEiJ_T0039423.1 MGP_CASTEiJ_G0020672.1 mouse_genomes_project 14 48758716 48759302 + Sap18 protein_coding retained_intron MGP_CASTEiJ_T0039424.1 MGP_CASTEiJ_G0020672.1 mouse_genomes_project 14 48758735 48762562 + MGP_CASTEiJ_P0039424 Sap18 protein_coding protein_coding MGP_CASTEiJ_T0038129.1 MGP_CASTEiJ_G0020296.1 mouse_genomes_project 14 13127497 13155172 - MGP_CASTEiJ_P0038129 Anxa7 protein_coding protein_coding MGP_CASTEiJ_T0038130.1 MGP_CASTEiJ_G0020296.1 mouse_genomes_project 14 13127497 13155172 - MGP_CASTEiJ_P0038130 Anxa7 protein_coding protein_coding MGP_CASTEiJ_T0038131.1 MGP_CASTEiJ_G0020296.1 mouse_genomes_project 14 13127517 13155148 - MGP_CASTEiJ_P0038131 Anxa7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039996.1 MGP_CASTEiJ_G0020881.1 mouse_genomes_project 14 94898961 94905927 - MGP_CASTEiJ_P0039996 Commd6 protein_coding protein_coding MGP_CASTEiJ_T0039997.1 MGP_CASTEiJ_G0020881.1 mouse_genomes_project 14 94898962 94905709 - MGP_CASTEiJ_P0039997 Commd6 protein_coding protein_coding MGP_CASTEiJ_T0039998.1 MGP_CASTEiJ_G0020881.1 mouse_genomes_project 14 94905287 94905927 - Commd6 protein_coding retained_intron MGP_CASTEiJ_T0038160.1 MGP_CASTEiJ_G0020308.1 mouse_genomes_project 14 13529620 13536206 + MGP_CASTEiJ_P0038160 Plau protein_coding protein_coding MGP_CASTEiJ_T0003409.1 MGP_CASTEiJ_G0003110.1 mouse_genomes_project 14 14496283 14503243 + Gm15935 antisense antisense MGP_CASTEiJ_T0003410.1 MGP_CASTEiJ_G0003110.1 mouse_genomes_project 14 14496305 14503538 + Gm15935 antisense antisense MGP_CASTEiJ_T0003411.1 MGP_CASTEiJ_G0003110.1 mouse_genomes_project 14 14496329 14502989 + Gm15935 antisense antisense MGP_CASTEiJ_T0012621.1 MGP_CASTEiJ_G0010784.1 mouse_genomes_project 14 35933973 35934883 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0038598.1 MGP_CASTEiJ_G0020408.1 mouse_genomes_project 14 25702547 25760368 + MGP_CASTEiJ_P0038598 Prrxl1 protein_coding protein_coding MGP_CASTEiJ_T0038599.1 MGP_CASTEiJ_G0020408.1 mouse_genomes_project 14 25702548 25739115 + MGP_CASTEiJ_P0038599 Prrxl1 protein_coding protein_coding MGP_CASTEiJ_T0038600.1 MGP_CASTEiJ_G0020408.1 mouse_genomes_project 14 25702681 25739091 + MGP_CASTEiJ_P0038600 Prrxl1 protein_coding protein_coding MGP_CASTEiJ_T0038601.1 MGP_CASTEiJ_G0020408.1 mouse_genomes_project 14 25703007 25760410 + MGP_CASTEiJ_P0038601 Prrxl1 protein_coding protein_coding MGP_CASTEiJ_T0040116.1 MGP_CASTEiJ_G0020922.1 mouse_genomes_project 14 116255851 116428957 - MGP_CASTEiJ_P0040116 Dock9 protein_coding protein_coding MGP_CASTEiJ_T0040117.1 MGP_CASTEiJ_G0020922.1 mouse_genomes_project 14 116255851 116538328 - MGP_CASTEiJ_P0040117 Dock9 protein_coding protein_coding MGP_CASTEiJ_T0040118.1 MGP_CASTEiJ_G0020922.1 mouse_genomes_project 14 116257497 116428853 - MGP_CASTEiJ_P0040118 Dock9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038726.1 MGP_CASTEiJ_G0020460.1 mouse_genomes_project 14 35683924 35693400 - MGP_CASTEiJ_P0038726 Ptgdr protein_coding protein_coding MGP_CASTEiJ_T0039719.1 MGP_CASTEiJ_G0020786.1 mouse_genomes_project 14 61270199 61514274 + MGP_CASTEiJ_P0039719 Pebp4 protein_coding protein_coding MGP_CASTEiJ_T0038004.1 MGP_CASTEiJ_G0020253.1 mouse_genomes_project 14 3590982 3591423 + MGP_CASTEiJ_P0038004 Rpl21-ps4 protein_coding protein_coding MGP_CASTEiJ_T0038161.1 MGP_CASTEiJ_G0020309.1 mouse_genomes_project 14 13647137 13746891 + MGP_CASTEiJ_P0038161 Vcl protein_coding protein_coding MGP_CASTEiJ_T0003418.1 MGP_CASTEiJ_G0003116.1 mouse_genomes_project 14 19380663 19381161 + 9930004E17Rik antisense antisense MGP_CASTEiJ_T0038043.1 MGP_CASTEiJ_G0020270.1 mouse_genomes_project 14 7338867 7567338 + MGP_CASTEiJ_P0038043 Nek10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038044.1 MGP_CASTEiJ_G0020270.1 mouse_genomes_project 14 7360178 7555168 + MGP_CASTEiJ_P0038044 Nek10 protein_coding protein_coding MGP_CASTEiJ_T0038045.1 MGP_CASTEiJ_G0020270.1 mouse_genomes_project 14 7360228 7561980 + MGP_CASTEiJ_P0038045 Nek10 protein_coding protein_coding MGP_CASTEiJ_T0038046.1 MGP_CASTEiJ_G0020270.1 mouse_genomes_project 14 7404109 7518102 + Nek10 protein_coding processed_transcript MGP_CASTEiJ_T0038047.1 MGP_CASTEiJ_G0020270.1 mouse_genomes_project 14 7408395 7519883 + Nek10 protein_coding retained_intron MGP_CASTEiJ_T0038048.1 MGP_CASTEiJ_G0020270.1 mouse_genomes_project 14 7479150 7562030 + MGP_CASTEiJ_P0038048 Nek10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039860.1 MGP_CASTEiJ_G0020828.1 mouse_genomes_project 14 66971149 67035616 + MGP_CASTEiJ_P0039860 Zc3h13 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039861.1 MGP_CASTEiJ_G0020828.1 mouse_genomes_project 14 66971221 67035608 + MGP_CASTEiJ_P0039861 Zc3h13 protein_coding protein_coding MGP_CASTEiJ_T0039896.1 MGP_CASTEiJ_G0020840.1 mouse_genomes_project 14 68322614 68346459 - MGP_CASTEiJ_P0039896 Serp2 protein_coding protein_coding MGP_CASTEiJ_T0038146.1 MGP_CASTEiJ_G0020300.1 mouse_genomes_project 14 13332831 13341640 - MGP_CASTEiJ_P0038146 Myoz1 protein_coding protein_coding MGP_CASTEiJ_T0040073.1 MGP_CASTEiJ_G0020907.1 mouse_genomes_project 14 112619216 112647875 + MGP_CASTEiJ_P0040073 Gpr180 protein_coding protein_coding MGP_CASTEiJ_T0040074.1 MGP_CASTEiJ_G0020907.1 mouse_genomes_project 14 112619254 112644769 + MGP_CASTEiJ_P0040074 Gpr180 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039793.1 MGP_CASTEiJ_G0020812.1 mouse_genomes_project 14 64558327 64561962 - MGP_CASTEiJ_P0039793 protein_coding protein_coding MGP_CASTEiJ_T0038881.1 MGP_CASTEiJ_G0020507.1 mouse_genomes_project 14 41459036 41464788 + MGP_CASTEiJ_P0038881 Tlr11 protein_coding protein_coding MGP_CASTEiJ_T0038882.1 MGP_CASTEiJ_G0020507.1 mouse_genomes_project 14 41461626 41464619 + MGP_CASTEiJ_P0038882 Tlr11 protein_coding protein_coding MGP_CASTEiJ_T0039499.1 MGP_CASTEiJ_G0020698.1 mouse_genomes_project 14 52476894 52497656 - MGP_CASTEiJ_P0039499 Ebpl protein_coding protein_coding MGP_CASTEiJ_T0000889.1 MGP_CASTEiJ_G0000828.1 mouse_genomes_project 14 92920172 92978154 - TEC TEC MGP_CASTEiJ_T0003444.1 MGP_CASTEiJ_G0003138.1 mouse_genomes_project 14 48430396 48434421 - Ift88os antisense antisense MGP_CASTEiJ_T0039063.1 MGP_CASTEiJ_G0020562.1 mouse_genomes_project 14 43684035 43694245 + MGP_CASTEiJ_P0039063 Olfr1509 protein_coding protein_coding MGP_CASTEiJ_T0039064.1 MGP_CASTEiJ_G0020562.1 mouse_genomes_project 14 43684036 43693634 + MGP_CASTEiJ_P0039064 Olfr1509 protein_coding protein_coding MGP_CASTEiJ_T0039065.1 MGP_CASTEiJ_G0020562.1 mouse_genomes_project 14 43684071 43693468 + MGP_CASTEiJ_P0039065 Olfr1509 protein_coding protein_coding MGP_CASTEiJ_T0039066.1 MGP_CASTEiJ_G0020562.1 mouse_genomes_project 14 43692190 43693727 + MGP_CASTEiJ_P0039066 Olfr1509 protein_coding protein_coding MGP_CASTEiJ_T0039067.1 MGP_CASTEiJ_G0020562.1 mouse_genomes_project 14 43693235 43694245 + MGP_CASTEiJ_P0039067 Olfr1509 protein_coding protein_coding MGP_CASTEiJ_T0002525.1 MGP_CASTEiJ_G0002429.1 mouse_genomes_project 14 43882873 43883381 + MGP_CASTEiJ_P0002525 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002483.1 MGP_CASTEiJ_G0002394.1 mouse_genomes_project 14 44860062 44860128 + MGP_CASTEiJ_P0002483 Traj2 TR_J_gene TR_J_gene MGP_CASTEiJ_T0038931.1 MGP_CASTEiJ_G0020535.1 mouse_genomes_project 14 42241073 42262388 + MGP_CASTEiJ_P0038931 Rnase4 protein_coding protein_coding MGP_CASTEiJ_T0038933.1 MGP_CASTEiJ_G0020535.1 mouse_genomes_project 14 42245911 42262388 + MGP_CASTEiJ_P0038933 Rnase4 protein_coding protein_coding MGP_CASTEiJ_T0038111.1 MGP_CASTEiJ_G0020289.1 mouse_genomes_project 14 12925396 12931576 - MGP_CASTEiJ_P0038111 Kcnk16 protein_coding protein_coding MGP_CASTEiJ_T0040127.1 MGP_CASTEiJ_G0020929.1 mouse_genomes_project 14 117223416 117242037 - MGP_CASTEiJ_P0040127 Gm5089 protein_coding protein_coding MGP_CASTEiJ_T0100605.1 MGP_CASTEiJ_G0037518.1 mouse_genomes_project 14 25270088 25270285 - Gm23946 snoRNA snoRNA MGP_CASTEiJ_T0099387.1 MGP_CASTEiJ_G0036300.1 mouse_genomes_project 14 43575125 43575229 + Gm26328 snRNA snRNA MGP_CASTEiJ_T0039178.1 MGP_CASTEiJ_G0020593.1 mouse_genomes_project 14 45610606 45622294 - MGP_CASTEiJ_P0039178 Efs protein_coding protein_coding MGP_CASTEiJ_T0016654.1 MGP_CASTEiJ_G0014584.1 mouse_genomes_project 14 57749350 57751147 - 1700001G11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016655.1 MGP_CASTEiJ_G0014584.1 mouse_genomes_project 14 57749351 57750958 - 1700001G11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016656.1 MGP_CASTEiJ_G0014584.1 mouse_genomes_project 14 57749510 57750901 - 1700001G11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0002515.1 MGP_CASTEiJ_G0002422.1 mouse_genomes_project 14 43668068 43669021 + MGP_CASTEiJ_P0002515 Trav1 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002516.1 MGP_CASTEiJ_G0002422.1 mouse_genomes_project 14 43668107 43669021 + MGP_CASTEiJ_P0002516 Trav1 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039973.1 MGP_CASTEiJ_G0020871.1 mouse_genomes_project 14 89084843 89512606 - MGP_CASTEiJ_P0039973 Klhl1 protein_coding protein_coding MGP_CASTEiJ_T0039569.1 MGP_CASTEiJ_G0020729.1 mouse_genomes_project 14 55412840 55424310 + MGP_CASTEiJ_P0039569 Prss51 protein_coding protein_coding MGP_CASTEiJ_T0039570.1 MGP_CASTEiJ_G0020729.1 mouse_genomes_project 14 55420352 55424306 + MGP_CASTEiJ_P0039570 Prss51 protein_coding protein_coding MGP_CASTEiJ_T0039571.1 MGP_CASTEiJ_G0020729.1 mouse_genomes_project 14 55420382 55423748 + MGP_CASTEiJ_P0039571 Prss51 protein_coding protein_coding MGP_CASTEiJ_T0002622.1 MGP_CASTEiJ_G0002512.1 mouse_genomes_project 14 44198561 44199029 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0100640.1 MGP_CASTEiJ_G0037553.1 mouse_genomes_project 14 90379965 90380103 - Gm23276 snoRNA snoRNA MGP_CASTEiJ_T0099378.1 MGP_CASTEiJ_G0036291.1 mouse_genomes_project 14 33782844 33782951 + Gm24388 snRNA snRNA MGP_CASTEiJ_T0039360.1 MGP_CASTEiJ_G0020645.1 mouse_genomes_project 14 46882404 46885457 - MGP_CASTEiJ_P0039360 Mcpt8 protein_coding protein_coding MGP_CASTEiJ_T0040060.1 MGP_CASTEiJ_G0020900.1 mouse_genomes_project 14 102630365 102634614 - MGP_CASTEiJ_P0040060 Slitrk1 protein_coding protein_coding MGP_CASTEiJ_T0039221.1 MGP_CASTEiJ_G0020607.1 mouse_genomes_project 14 46247059 46254054 + MGP_CASTEiJ_P0039221 Cpne6 protein_coding protein_coding MGP_CASTEiJ_T0039222.1 MGP_CASTEiJ_G0020607.1 mouse_genomes_project 14 46247062 46254054 + MGP_CASTEiJ_P0039222 Cpne6 protein_coding protein_coding MGP_CASTEiJ_T0039223.1 MGP_CASTEiJ_G0020607.1 mouse_genomes_project 14 46247089 46254053 + Cpne6 protein_coding retained_intron MGP_CASTEiJ_T0039224.1 MGP_CASTEiJ_G0020607.1 mouse_genomes_project 14 46247210 46250315 + MGP_CASTEiJ_P0039224 Cpne6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039225.1 MGP_CASTEiJ_G0020607.1 mouse_genomes_project 14 46247923 46254054 + Cpne6 protein_coding retained_intron MGP_CASTEiJ_T0039226.1 MGP_CASTEiJ_G0020607.1 mouse_genomes_project 14 46247972 46254054 + MGP_CASTEiJ_P0039226 Cpne6 protein_coding protein_coding MGP_CASTEiJ_T0039227.1 MGP_CASTEiJ_G0020607.1 mouse_genomes_project 14 46248597 46254052 + MGP_CASTEiJ_P0039227 Cpne6 protein_coding protein_coding MGP_CASTEiJ_T0038937.1 MGP_CASTEiJ_G0020539.1 mouse_genomes_project 14 42361970 42444782 - MGP_CASTEiJ_P0038937 Ang5 protein_coding protein_coding MGP_CASTEiJ_T0038938.1 MGP_CASTEiJ_G0020539.1 mouse_genomes_project 14 42362132 42362570 - MGP_CASTEiJ_P0038938 Ang5 protein_coding protein_coding MGP_CASTEiJ_T0009756.1 MGP_CASTEiJ_G0007944.1 mouse_genomes_project 14 109386295 109386382 + Mir19b-1 miRNA miRNA MGP_CASTEiJ_T0039935.1 MGP_CASTEiJ_G0020858.1 mouse_genomes_project 14 71548247 71594499 + MGP_CASTEiJ_P0039935 Sugt1 protein_coding protein_coding MGP_CASTEiJ_T0012620.1 MGP_CASTEiJ_G0010783.1 mouse_genomes_project 14 35742850 35743635 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012622.1 MGP_CASTEiJ_G0010785.1 mouse_genomes_project 14 35992727 35993072 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012606.1 MGP_CASTEiJ_G0010769.1 mouse_genomes_project 14 11795345 11795682 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039290.1 MGP_CASTEiJ_G0020619.1 mouse_genomes_project 14 46370762 46381042 - MGP_CASTEiJ_P0039290 Ipo4 protein_coding protein_coding MGP_CASTEiJ_T0039291.1 MGP_CASTEiJ_G0020619.1 mouse_genomes_project 14 46370995 46380989 - MGP_CASTEiJ_P0039291 Ipo4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039292.1 MGP_CASTEiJ_G0020619.1 mouse_genomes_project 14 46371077 46371794 - Ipo4 protein_coding retained_intron MGP_CASTEiJ_T0039293.1 MGP_CASTEiJ_G0020619.1 mouse_genomes_project 14 46371080 46372922 - Ipo4 protein_coding processed_transcript MGP_CASTEiJ_T0039294.1 MGP_CASTEiJ_G0020619.1 mouse_genomes_project 14 46371083 46371779 - Ipo4 protein_coding processed_transcript MGP_CASTEiJ_T0039295.1 MGP_CASTEiJ_G0020619.1 mouse_genomes_project 14 46371085 46372749 - Ipo4 protein_coding retained_intron MGP_CASTEiJ_T0039296.1 MGP_CASTEiJ_G0020619.1 mouse_genomes_project 14 46371101 46381315 - MGP_CASTEiJ_P0039296 Ipo4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039297.1 MGP_CASTEiJ_G0020619.1 mouse_genomes_project 14 46371257 46383248 - Ipo4 protein_coding processed_transcript MGP_CASTEiJ_T0039298.1 MGP_CASTEiJ_G0020619.1 mouse_genomes_project 14 46372656 46373283 - Ipo4 protein_coding retained_intron MGP_CASTEiJ_T0039299.1 MGP_CASTEiJ_G0020619.1 mouse_genomes_project 14 46374141 46376021 - Ipo4 protein_coding retained_intron MGP_CASTEiJ_T0039300.1 MGP_CASTEiJ_G0020619.1 mouse_genomes_project 14 46378281 46379012 - Ipo4 protein_coding retained_intron MGP_CASTEiJ_T0039301.1 MGP_CASTEiJ_G0020619.1 mouse_genomes_project 14 46379110 46380565 - Ipo4 protein_coding retained_intron MGP_CASTEiJ_T0039302.1 MGP_CASTEiJ_G0020619.1 mouse_genomes_project 14 46379401 46380924 - Ipo4 protein_coding retained_intron MGP_CASTEiJ_T0039635.1 MGP_CASTEiJ_G0020754.1 mouse_genomes_project 14 57801463 57813953 + MGP_CASTEiJ_P0039635 Stmn4 protein_coding protein_coding MGP_CASTEiJ_T0039636.1 MGP_CASTEiJ_G0020754.1 mouse_genomes_project 14 57801471 57818903 + MGP_CASTEiJ_P0039636 Stmn4 protein_coding protein_coding MGP_CASTEiJ_T0039637.1 MGP_CASTEiJ_G0020754.1 mouse_genomes_project 14 57801534 57812836 + Stmn4 protein_coding processed_transcript MGP_CASTEiJ_T0039638.1 MGP_CASTEiJ_G0020754.1 mouse_genomes_project 14 57801534 57813047 + Stmn4 protein_coding retained_intron MGP_CASTEiJ_T0039639.1 MGP_CASTEiJ_G0020754.1 mouse_genomes_project 14 57801540 57818897 + MGP_CASTEiJ_P0039639 Stmn4 protein_coding protein_coding MGP_CASTEiJ_T0039640.1 MGP_CASTEiJ_G0020754.1 mouse_genomes_project 14 57801541 57818897 + MGP_CASTEiJ_P0039640 Stmn4 protein_coding protein_coding MGP_CASTEiJ_T0039641.1 MGP_CASTEiJ_G0020754.1 mouse_genomes_project 14 57801542 57818871 + MGP_CASTEiJ_P0039641 Stmn4 protein_coding protein_coding MGP_CASTEiJ_T0039642.1 MGP_CASTEiJ_G0020754.1 mouse_genomes_project 14 57801545 57813958 + MGP_CASTEiJ_P0039642 Stmn4 protein_coding protein_coding MGP_CASTEiJ_T0039643.1 MGP_CASTEiJ_G0020754.1 mouse_genomes_project 14 57801548 57815299 + Stmn4 protein_coding retained_intron MGP_CASTEiJ_T0038411.1 MGP_CASTEiJ_G0020368.1 mouse_genomes_project 14 23796606 23853945 + MGP_CASTEiJ_P0038411 Tmem110 protein_coding protein_coding MGP_CASTEiJ_T0038412.1 MGP_CASTEiJ_G0020368.1 mouse_genomes_project 14 23796610 23851529 + MGP_CASTEiJ_P0038412 Tmem110 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038413.1 MGP_CASTEiJ_G0020368.1 mouse_genomes_project 14 23843414 23851923 + Tmem110 protein_coding processed_transcript MGP_CASTEiJ_T0038414.1 MGP_CASTEiJ_G0020368.1 mouse_genomes_project 14 23847482 23849518 + Tmem110 protein_coding retained_intron MGP_CASTEiJ_T0038415.1 MGP_CASTEiJ_G0020368.1 mouse_genomes_project 14 23849320 23851959 + Tmem110 protein_coding retained_intron MGP_CASTEiJ_T0039767.1 MGP_CASTEiJ_G0020803.1 mouse_genomes_project 14 62072683 62077405 + MGP_CASTEiJ_P0039767 Nudt18 protein_coding protein_coding MGP_CASTEiJ_T0006545.1 MGP_CASTEiJ_G0005421.1 mouse_genomes_project 14 61668887 61684038 + Gm26908 lincRNA lincRNA MGP_CASTEiJ_T0002588.1 MGP_CASTEiJ_G0002484.1 mouse_genomes_project 14 44790256 44790889 - MGP_CASTEiJ_P0002588 Trdv5 TR_V_gene TR_V_gene MGP_CASTEiJ_T0016670.1 MGP_CASTEiJ_G0014591.1 mouse_genomes_project 14 69972769 69997626 + Gm19301 processed_transcript processed_transcript MGP_CASTEiJ_T0039324.1 MGP_CASTEiJ_G0020626.1 mouse_genomes_project 14 46449440 46462907 - MGP_CASTEiJ_P0039324 Tgm1 protein_coding protein_coding MGP_CASTEiJ_T0039325.1 MGP_CASTEiJ_G0020626.1 mouse_genomes_project 14 46449440 46462907 - MGP_CASTEiJ_P0039325 Tgm1 protein_coding protein_coding MGP_CASTEiJ_T0039326.1 MGP_CASTEiJ_G0020626.1 mouse_genomes_project 14 46449440 46462503 - MGP_CASTEiJ_P0039326 Tgm1 protein_coding protein_coding MGP_CASTEiJ_T0038188.1 MGP_CASTEiJ_G0020314.1 mouse_genomes_project 14 14486645 14496217 - MGP_CASTEiJ_P0038188 Dusp13 protein_coding protein_coding MGP_CASTEiJ_T0038189.1 MGP_CASTEiJ_G0020314.1 mouse_genomes_project 14 14486646 14495142 - MGP_CASTEiJ_P0038189 Dusp13 protein_coding protein_coding MGP_CASTEiJ_T0038190.1 MGP_CASTEiJ_G0020314.1 mouse_genomes_project 14 14486646 14497620 - MGP_CASTEiJ_P0038190 Dusp13 protein_coding protein_coding MGP_CASTEiJ_T0038191.1 MGP_CASTEiJ_G0020314.1 mouse_genomes_project 14 14486646 14505556 - MGP_CASTEiJ_P0038191 Dusp13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038192.1 MGP_CASTEiJ_G0020314.1 mouse_genomes_project 14 14486646 14505558 - MGP_CASTEiJ_P0038192 Dusp13 protein_coding protein_coding MGP_CASTEiJ_T0038193.1 MGP_CASTEiJ_G0020314.1 mouse_genomes_project 14 14486646 14496246 - MGP_CASTEiJ_P0038193 Dusp13 protein_coding protein_coding MGP_CASTEiJ_T0038194.1 MGP_CASTEiJ_G0020314.1 mouse_genomes_project 14 14486646 14496260 - MGP_CASTEiJ_P0038194 Dusp13 protein_coding protein_coding MGP_CASTEiJ_T0038195.1 MGP_CASTEiJ_G0020314.1 mouse_genomes_project 14 14486649 14505578 - MGP_CASTEiJ_P0038195 Dusp13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038196.1 MGP_CASTEiJ_G0020314.1 mouse_genomes_project 14 14486840 14505556 - MGP_CASTEiJ_P0038196 Dusp13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038197.1 MGP_CASTEiJ_G0020314.1 mouse_genomes_project 14 14486900 14505562 - MGP_CASTEiJ_P0038197 Dusp13 protein_coding protein_coding MGP_CASTEiJ_T0038198.1 MGP_CASTEiJ_G0020314.1 mouse_genomes_project 14 14494875 14505562 - Dusp13 protein_coding processed_transcript MGP_CASTEiJ_T0038199.1 MGP_CASTEiJ_G0020314.1 mouse_genomes_project 14 14494884 14503391 - MGP_CASTEiJ_P0038199 Dusp13 protein_coding protein_coding MGP_CASTEiJ_T0038200.1 MGP_CASTEiJ_G0020314.1 mouse_genomes_project 14 14498252 14505574 - MGP_CASTEiJ_P0038200 Dusp13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038201.1 MGP_CASTEiJ_G0020314.1 mouse_genomes_project 14 14499628 14508117 - Dusp13 protein_coding processed_transcript MGP_CASTEiJ_T0012627.1 MGP_CASTEiJ_G0010790.1 mouse_genomes_project 14 40806177 40806554 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0038576.1 MGP_CASTEiJ_G0020401.1 mouse_genomes_project 14 25258595 25280773 - MGP_CASTEiJ_P0038576 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038577.1 MGP_CASTEiJ_G0020401.1 mouse_genomes_project 14 25258595 25280796 - MGP_CASTEiJ_P0038577 protein_coding protein_coding MGP_CASTEiJ_T0038578.1 MGP_CASTEiJ_G0020401.1 mouse_genomes_project 14 25267190 25280813 - MGP_CASTEiJ_P0038578 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038579.1 MGP_CASTEiJ_G0020401.1 mouse_genomes_project 14 25269521 25280755 - protein_coding retained_intron MGP_CASTEiJ_T0038580.1 MGP_CASTEiJ_G0020401.1 mouse_genomes_project 14 25271925 25280780 - protein_coding retained_intron MGP_CASTEiJ_T0038581.1 MGP_CASTEiJ_G0020401.1 mouse_genomes_project 14 25276557 25280806 - protein_coding retained_intron MGP_CASTEiJ_T0039619.1 MGP_CASTEiJ_G0020748.1 mouse_genomes_project 14 57421051 57450160 - MGP_CASTEiJ_P0039619 Gulo protein_coding protein_coding MGP_CASTEiJ_T0039425.1 MGP_CASTEiJ_G0020673.1 mouse_genomes_project 14 48767021 48788196 - MGP_CASTEiJ_P0039425 Ska3 protein_coding protein_coding MGP_CASTEiJ_T0039426.1 MGP_CASTEiJ_G0020673.1 mouse_genomes_project 14 48770540 48788324 - MGP_CASTEiJ_P0039426 Ska3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002569.1 MGP_CASTEiJ_G0002469.1 mouse_genomes_project 14 44334326 44334831 + MGP_CASTEiJ_P0002569 TR_V_gene TR_V_gene MGP_CASTEiJ_T0038042.1 MGP_CASTEiJ_G0020269.1 mouse_genomes_project 14 7229794 7332767 + MGP_CASTEiJ_P0038042 Slc4a7 protein_coding protein_coding MGP_CASTEiJ_T0002501.1 MGP_CASTEiJ_G0002410.1 mouse_genomes_project 14 44803016 44803079 + TR_J_pseudogene TR_J_pseudogene MGP_CASTEiJ_T0002548.1 MGP_CASTEiJ_G0002451.1 mouse_genomes_project 14 44149316 44149864 + MGP_CASTEiJ_P0002548 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002549.1 MGP_CASTEiJ_G0002451.1 mouse_genomes_project 14 44149385 44149864 + MGP_CASTEiJ_P0002549 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002468.1 MGP_CASTEiJ_G0002379.1 mouse_genomes_project 14 44841823 44841881 + MGP_CASTEiJ_P0002468 Traj20 TR_J_gene TR_J_gene MGP_CASTEiJ_T0037982.1 MGP_CASTEiJ_G0020248.1 mouse_genomes_project 14 552304 591485 - MGP_CASTEiJ_P0037982 Acox2 protein_coding protein_coding MGP_CASTEiJ_T0037983.1 MGP_CASTEiJ_G0020248.1 mouse_genomes_project 14 552304 592006 - MGP_CASTEiJ_P0037983 Acox2 protein_coding protein_coding MGP_CASTEiJ_T0037984.1 MGP_CASTEiJ_G0020248.1 mouse_genomes_project 14 567415 577662 - Acox2 protein_coding processed_transcript MGP_CASTEiJ_T0037985.1 MGP_CASTEiJ_G0020248.1 mouse_genomes_project 14 574818 577689 - Acox2 protein_coding retained_intron MGP_CASTEiJ_T0037986.1 MGP_CASTEiJ_G0020248.1 mouse_genomes_project 14 579133 586141 - Acox2 protein_coding retained_intron MGP_CASTEiJ_T0037987.1 MGP_CASTEiJ_G0020248.1 mouse_genomes_project 14 586160 590530 - MGP_CASTEiJ_P0037987 Acox2 protein_coding protein_coding MGP_CASTEiJ_T0037988.1 MGP_CASTEiJ_G0020248.1 mouse_genomes_project 14 587811 590802 - Acox2 protein_coding processed_transcript MGP_CASTEiJ_T0037989.1 MGP_CASTEiJ_G0020248.1 mouse_genomes_project 14 588549 589592 - Acox2 protein_coding retained_intron MGP_CASTEiJ_T0012634.1 MGP_CASTEiJ_G0010797.1 mouse_genomes_project 14 44961542 44961868 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002626.1 MGP_CASTEiJ_G0002516.1 mouse_genomes_project 14 44388907 44389074 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0039485.1 MGP_CASTEiJ_G0020692.1 mouse_genomes_project 14 51891776 51905392 + MGP_CASTEiJ_P0039485 C1qtnf9 protein_coding protein_coding MGP_CASTEiJ_T0003426.1 MGP_CASTEiJ_G0003124.1 mouse_genomes_project 14 36479644 36490383 + Gm15601 antisense antisense MGP_CASTEiJ_T0012633.1 MGP_CASTEiJ_G0010796.1 mouse_genomes_project 14 44304925 44305351 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0038036.1 MGP_CASTEiJ_G0020265.1 mouse_genomes_project 14 6843632 6849671 + MGP_CASTEiJ_P0038036 Olfr31 protein_coding protein_coding MGP_CASTEiJ_T0038037.1 MGP_CASTEiJ_G0020265.1 mouse_genomes_project 14 6848717 6849671 + MGP_CASTEiJ_P0038037 Olfr31 protein_coding protein_coding MGP_CASTEiJ_T0012612.1 MGP_CASTEiJ_G0010775.1 mouse_genomes_project 14 18885629 18886861 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0038672.1 MGP_CASTEiJ_G0020438.1 mouse_genomes_project 14 27806922 27816433 - MGP_CASTEiJ_P0038672 Opn4 protein_coding protein_coding MGP_CASTEiJ_T0038673.1 MGP_CASTEiJ_G0020438.1 mouse_genomes_project 14 27808656 27816433 - MGP_CASTEiJ_P0038673 Opn4 protein_coding protein_coding MGP_CASTEiJ_T0009740.1 MGP_CASTEiJ_G0007928.1 mouse_genomes_project 14 61102564 61102637 + Mir6950 miRNA miRNA MGP_CASTEiJ_T0100598.1 MGP_CASTEiJ_G0037511.1 mouse_genomes_project 14 11382056 11382191 + Gm22499 snoRNA snoRNA MGP_CASTEiJ_T0038603.1 MGP_CASTEiJ_G0020410.1 mouse_genomes_project 14 25903477 25938827 + MGP_CASTEiJ_P0038603 1810011H11Rik protein_coding protein_coding MGP_CASTEiJ_T0040109.1 MGP_CASTEiJ_G0020919.1 mouse_genomes_project 14 115698713 115917808 + MGP_CASTEiJ_P0040109 Farp1 protein_coding protein_coding MGP_CASTEiJ_T0040110.1 MGP_CASTEiJ_G0020919.1 mouse_genomes_project 14 115699077 115966651 + MGP_CASTEiJ_P0040110 Farp1 protein_coding protein_coding MGP_CASTEiJ_T0040111.1 MGP_CASTEiJ_G0020919.1 mouse_genomes_project 14 115768619 115921327 + Farp1 protein_coding processed_transcript MGP_CASTEiJ_T0040112.1 MGP_CASTEiJ_G0020919.1 mouse_genomes_project 14 115937882 115950873 + Farp1 protein_coding retained_intron MGP_CASTEiJ_T0038118.1 MGP_CASTEiJ_G0020293.1 mouse_genomes_project 14 13060226 13064473 - MGP_CASTEiJ_P0038118 Dnajc9 protein_coding protein_coding MGP_CASTEiJ_T0038834.1 MGP_CASTEiJ_G0020488.1 mouse_genomes_project 14 39722666 39730333 - MGP_CASTEiJ_P0038834 Otx2 protein_coding protein_coding MGP_CASTEiJ_T0038835.1 MGP_CASTEiJ_G0020488.1 mouse_genomes_project 14 39723162 39727954 - MGP_CASTEiJ_P0038835 Otx2 protein_coding protein_coding MGP_CASTEiJ_T0038836.1 MGP_CASTEiJ_G0020488.1 mouse_genomes_project 14 39723162 39732602 - MGP_CASTEiJ_P0038836 Otx2 protein_coding protein_coding MGP_CASTEiJ_T0038837.1 MGP_CASTEiJ_G0020488.1 mouse_genomes_project 14 39723905 39727014 - MGP_CASTEiJ_P0038837 Otx2 protein_coding protein_coding MGP_CASTEiJ_T0038838.1 MGP_CASTEiJ_G0020488.1 mouse_genomes_project 14 39723942 39732733 - MGP_CASTEiJ_P0038838 Otx2 protein_coding protein_coding MGP_CASTEiJ_T0038839.1 MGP_CASTEiJ_G0020488.1 mouse_genomes_project 14 39724294 39732597 - MGP_CASTEiJ_P0038839 Otx2 protein_coding protein_coding MGP_CASTEiJ_T0038840.1 MGP_CASTEiJ_G0020488.1 mouse_genomes_project 14 39726440 39732597 - MGP_CASTEiJ_P0038840 Otx2 protein_coding protein_coding MGP_CASTEiJ_T0038841.1 MGP_CASTEiJ_G0020488.1 mouse_genomes_project 14 39726490 39730608 - MGP_CASTEiJ_P0038841 Otx2 protein_coding protein_coding MGP_CASTEiJ_T0003449.1 MGP_CASTEiJ_G0003141.1 mouse_genomes_project 14 54793331 54799487 + Gm17232 antisense antisense MGP_CASTEiJ_T0003398.1 MGP_CASTEiJ_G0003105.1 mouse_genomes_project 14 4377444 4396386 - Gm3848 antisense antisense MGP_CASTEiJ_T0003399.1 MGP_CASTEiJ_G0003105.1 mouse_genomes_project 14 4395373 4396371 - Gm3848 antisense antisense MGP_CASTEiJ_T0100650.1 MGP_CASTEiJ_G0037563.1 mouse_genomes_project 14 102285798 102285916 + Gm24229 snoRNA snoRNA MGP_CASTEiJ_T0038416.1 MGP_CASTEiJ_G0020369.1 mouse_genomes_project 14 23856204 23858561 + MGP_CASTEiJ_P0038416 Mustn1 protein_coding protein_coding MGP_CASTEiJ_T0039607.1 MGP_CASTEiJ_G0020745.1 mouse_genomes_project 14 57261758 57291910 + MGP_CASTEiJ_P0039607 Ccdc25 protein_coding protein_coding MGP_CASTEiJ_T0002555.1 MGP_CASTEiJ_G0002456.1 mouse_genomes_project 14 44210653 44211134 + MGP_CASTEiJ_P0002555 TR_V_gene TR_V_gene MGP_CASTEiJ_T0038119.1 MGP_CASTEiJ_G0020294.1 mouse_genomes_project 14 13066775 13069113 - MGP_CASTEiJ_P0038119 Mrps16 protein_coding protein_coding MGP_CASTEiJ_T0039588.1 MGP_CASTEiJ_G0020736.1 mouse_genomes_project 14 56575150 56639125 - MGP_CASTEiJ_P0039588 Fzd3 protein_coding protein_coding MGP_CASTEiJ_T0039589.1 MGP_CASTEiJ_G0020736.1 mouse_genomes_project 14 56584508 56603375 - Fzd3 protein_coding processed_transcript MGP_CASTEiJ_T0012664.1 MGP_CASTEiJ_G0010827.1 mouse_genomes_project 14 91215441 91215938 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012661.1 MGP_CASTEiJ_G0010824.1 mouse_genomes_project 14 80847923 80848907 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039878.1 MGP_CASTEiJ_G0020837.1 mouse_genomes_project 14 67836382 67864465 - MGP_CASTEiJ_P0039878 Gpalpp1 protein_coding protein_coding MGP_CASTEiJ_T0100599.1 MGP_CASTEiJ_G0037512.1 mouse_genomes_project 14 12869094 12869211 - Gm24912 snoRNA snoRNA MGP_CASTEiJ_T0038898.1 MGP_CASTEiJ_G0020521.1 mouse_genomes_project 14 41940192 41955365 + MGP_CASTEiJ_P0038898 Parp2 protein_coding protein_coding MGP_CASTEiJ_T0039180.1 MGP_CASTEiJ_G0020595.1 mouse_genomes_project 14 45632047 45634626 + MGP_CASTEiJ_P0039180 Cmtm5 protein_coding protein_coding MGP_CASTEiJ_T0002465.1 MGP_CASTEiJ_G0002376.1 mouse_genomes_project 14 44838465 44838525 + MGP_CASTEiJ_P0002465 Traj23 TR_J_gene TR_J_gene MGP_CASTEiJ_T0038325.1 MGP_CASTEiJ_G0020342.1 mouse_genomes_project 14 19281347 19333643 + MGP_CASTEiJ_P0038325 Dennd6a protein_coding protein_coding MGP_CASTEiJ_T0038326.1 MGP_CASTEiJ_G0020342.1 mouse_genomes_project 14 19281364 19339605 + MGP_CASTEiJ_P0038326 Dennd6a protein_coding protein_coding MGP_CASTEiJ_T0038991.1 MGP_CASTEiJ_G0020548.1 mouse_genomes_project 14 43235948 43238853 + MGP_CASTEiJ_P0038991 Tmem253 protein_coding protein_coding MGP_CASTEiJ_T0002556.1 MGP_CASTEiJ_G0002457.1 mouse_genomes_project 14 44210664 44211134 + MGP_CASTEiJ_P0002556 TR_V_gene TR_V_gene MGP_CASTEiJ_T0012629.1 MGP_CASTEiJ_G0010792.1 mouse_genomes_project 14 43660460 43660733 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040123.1 MGP_CASTEiJ_G0020927.1 mouse_genomes_project 14 116873240 116930830 + MGP_CASTEiJ_P0040123 Tm9sf2 protein_coding protein_coding MGP_CASTEiJ_T0040124.1 MGP_CASTEiJ_G0020927.1 mouse_genomes_project 14 116873340 116905916 + MGP_CASTEiJ_P0040124 Tm9sf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040125.1 MGP_CASTEiJ_G0020927.1 mouse_genomes_project 14 116873470 116929942 + MGP_CASTEiJ_P0040125 Tm9sf2 protein_coding protein_coding MGP_CASTEiJ_T0039368.1 MGP_CASTEiJ_G0020653.1 mouse_genomes_project 14 47077560 47080941 - MGP_CASTEiJ_P0039368 Gzmb protein_coding protein_coding MGP_CASTEiJ_T0038927.1 MGP_CASTEiJ_G0020531.1 mouse_genomes_project 14 42197350 42198063 - MGP_CASTEiJ_P0038927 Rnase11 protein_coding protein_coding MGP_CASTEiJ_T0039233.1 MGP_CASTEiJ_G0020611.1 mouse_genomes_project 14 46302565 46303991 + MGP_CASTEiJ_P0039233 Dcaf11 protein_coding protein_coding MGP_CASTEiJ_T0039234.1 MGP_CASTEiJ_G0020611.1 mouse_genomes_project 14 46302568 46303306 + Dcaf11 protein_coding processed_transcript MGP_CASTEiJ_T0039235.1 MGP_CASTEiJ_G0020611.1 mouse_genomes_project 14 46302572 46305505 + MGP_CASTEiJ_P0039235 Dcaf11 protein_coding protein_coding MGP_CASTEiJ_T0039236.1 MGP_CASTEiJ_G0020611.1 mouse_genomes_project 14 46302610 46312570 + MGP_CASTEiJ_P0039236 Dcaf11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039237.1 MGP_CASTEiJ_G0020611.1 mouse_genomes_project 14 46302669 46312041 + Dcaf11 protein_coding retained_intron MGP_CASTEiJ_T0039238.1 MGP_CASTEiJ_G0020611.1 mouse_genomes_project 14 46303031 46303649 + Dcaf11 protein_coding processed_transcript MGP_CASTEiJ_T0039239.1 MGP_CASTEiJ_G0020611.1 mouse_genomes_project 14 46303067 46303993 + MGP_CASTEiJ_P0039239 Dcaf11 protein_coding protein_coding MGP_CASTEiJ_T0039240.1 MGP_CASTEiJ_G0020611.1 mouse_genomes_project 14 46303082 46306978 + MGP_CASTEiJ_P0039240 Dcaf11 protein_coding protein_coding MGP_CASTEiJ_T0039241.1 MGP_CASTEiJ_G0020611.1 mouse_genomes_project 14 46303083 46312567 + MGP_CASTEiJ_P0039241 Dcaf11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039242.1 MGP_CASTEiJ_G0020611.1 mouse_genomes_project 14 46303520 46306356 + MGP_CASTEiJ_P0039242 Dcaf11 protein_coding protein_coding MGP_CASTEiJ_T0039243.1 MGP_CASTEiJ_G0020611.1 mouse_genomes_project 14 46303533 46312570 + Dcaf11 protein_coding retained_intron MGP_CASTEiJ_T0039244.1 MGP_CASTEiJ_G0020611.1 mouse_genomes_project 14 46303616 46312437 + MGP_CASTEiJ_P0039244 Dcaf11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039245.1 MGP_CASTEiJ_G0020611.1 mouse_genomes_project 14 46303837 46312575 + MGP_CASTEiJ_P0039245 Dcaf11 protein_coding protein_coding MGP_CASTEiJ_T0039246.1 MGP_CASTEiJ_G0020611.1 mouse_genomes_project 14 46306965 46307418 + Dcaf11 protein_coding retained_intron MGP_CASTEiJ_T0039247.1 MGP_CASTEiJ_G0020611.1 mouse_genomes_project 14 46308379 46311895 + Dcaf11 protein_coding processed_transcript MGP_CASTEiJ_T0002574.1 MGP_CASTEiJ_G0002474.1 mouse_genomes_project 14 44346126 44346401 + MGP_CASTEiJ_P0002574 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039124.1 MGP_CASTEiJ_G0020579.1 mouse_genomes_project 14 45294109 45298319 + MGP_CASTEiJ_P0039124 Psmb11 protein_coding protein_coding MGP_CASTEiJ_T0039381.1 MGP_CASTEiJ_G0020659.1 mouse_genomes_project 14 47576595 47638430 - MGP_CASTEiJ_P0039381 Pspc1 protein_coding protein_coding MGP_CASTEiJ_T0039382.1 MGP_CASTEiJ_G0020659.1 mouse_genomes_project 14 47578139 47638430 - MGP_CASTEiJ_P0039382 Pspc1 protein_coding protein_coding MGP_CASTEiJ_T0039383.1 MGP_CASTEiJ_G0020659.1 mouse_genomes_project 14 47606514 47620585 - Pspc1 protein_coding retained_intron MGP_CASTEiJ_T0039384.1 MGP_CASTEiJ_G0020659.1 mouse_genomes_project 14 47606837 47638041 - MGP_CASTEiJ_P0039384 Pspc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0011041.1 MGP_CASTEiJ_G0009229.1 mouse_genomes_project 14 36343771 36344054 - Gm22637 misc_RNA misc_RNA MGP_CASTEiJ_T0038565.1 MGP_CASTEiJ_G0020398.1 mouse_genomes_project 14 25216693 25235536 + MGP_CASTEiJ_P0038565 Msmb protein_coding protein_coding MGP_CASTEiJ_T0038566.1 MGP_CASTEiJ_G0020398.1 mouse_genomes_project 14 25224664 25235536 + MGP_CASTEiJ_P0038566 Msmb protein_coding protein_coding MGP_CASTEiJ_T0002533.1 MGP_CASTEiJ_G0002436.1 mouse_genomes_project 14 44078754 44079301 + MGP_CASTEiJ_P0002533 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039058.1 MGP_CASTEiJ_G0020558.1 mouse_genomes_project 14 43599617 43606502 - MGP_CASTEiJ_P0039058 protein_coding protein_coding MGP_CASTEiJ_T0006498.1 MGP_CASTEiJ_G0005386.1 mouse_genomes_project 14 19080375 19087176 + Slmapos2 lincRNA lincRNA MGP_CASTEiJ_T0009748.1 MGP_CASTEiJ_G0007936.1 mouse_genomes_project 14 96296307 96296391 - Mir5130 miRNA miRNA MGP_CASTEiJ_T0038368.1 MGP_CASTEiJ_G0020360.1 mouse_genomes_project 14 22902381 22915090 - MGP_CASTEiJ_P0038368 Il17rb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038369.1 MGP_CASTEiJ_G0020360.1 mouse_genomes_project 14 22902408 22915173 - MGP_CASTEiJ_P0038369 Il17rb protein_coding protein_coding MGP_CASTEiJ_T0038370.1 MGP_CASTEiJ_G0020360.1 mouse_genomes_project 14 22902408 22915173 - MGP_CASTEiJ_P0038370 Il17rb protein_coding protein_coding MGP_CASTEiJ_T0038371.1 MGP_CASTEiJ_G0020360.1 mouse_genomes_project 14 22902439 22915086 - MGP_CASTEiJ_P0038371 Il17rb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038756.1 MGP_CASTEiJ_G0020470.1 mouse_genomes_project 14 37276832 37280897 + Gm15217 protein_coding processed_transcript MGP_CASTEiJ_T0038757.1 MGP_CASTEiJ_G0020470.1 mouse_genomes_project 14 37276885 37281087 + MGP_CASTEiJ_P0038757 Gm15217 protein_coding protein_coding MGP_CASTEiJ_T0038758.1 MGP_CASTEiJ_G0020470.1 mouse_genomes_project 14 37278551 37280847 + Gm15217 protein_coding processed_transcript MGP_CASTEiJ_T0002544.1 MGP_CASTEiJ_G0002447.1 mouse_genomes_project 14 44139108 44139639 + MGP_CASTEiJ_P0002544 TR_V_gene TR_V_gene MGP_CASTEiJ_T0012611.1 MGP_CASTEiJ_G0010774.1 mouse_genomes_project 14 18885625 18886824 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100600.1 MGP_CASTEiJ_G0037513.1 mouse_genomes_project 14 19194107 19194238 + Gm24031 snoRNA snoRNA MGP_CASTEiJ_T0039457.1 MGP_CASTEiJ_G0020683.1 mouse_genomes_project 14 50545753 50664663 + MGP_CASTEiJ_P0039457 Cab39l protein_coding protein_coding MGP_CASTEiJ_T0038029.1 MGP_CASTEiJ_G0020263.1 mouse_genomes_project 14 6666037 6675075 - MGP_CASTEiJ_P0038029 Psmd6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038030.1 MGP_CASTEiJ_G0020263.1 mouse_genomes_project 14 6666043 6675079 - MGP_CASTEiJ_P0038030 Psmd6 protein_coding protein_coding MGP_CASTEiJ_T0038031.1 MGP_CASTEiJ_G0020263.1 mouse_genomes_project 14 6667771 6670411 - Psmd6 protein_coding retained_intron MGP_CASTEiJ_T0038032.1 MGP_CASTEiJ_G0020263.1 mouse_genomes_project 14 6670055 6671213 - Psmd6 protein_coding retained_intron MGP_CASTEiJ_T0038033.1 MGP_CASTEiJ_G0020263.1 mouse_genomes_project 14 6673493 6675028 - Psmd6 protein_coding retained_intron MGP_CASTEiJ_T0100621.1 MGP_CASTEiJ_G0037534.1 mouse_genomes_project 14 53903269 53903428 + Gm25162 snoRNA snoRNA MGP_CASTEiJ_T0039877.1 MGP_CASTEiJ_G0020836.1 mouse_genomes_project 14 67688815 67699864 + MGP_CASTEiJ_P0039877 Kctd4 protein_coding protein_coding MGP_CASTEiJ_T0002623.1 MGP_CASTEiJ_G0002513.1 mouse_genomes_project 14 44252436 44252716 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0038099.1 MGP_CASTEiJ_G0020284.1 mouse_genomes_project 14 12381542 12440750 + MGP_CASTEiJ_P0038099 Nid2 protein_coding protein_coding MGP_CASTEiJ_T0038100.1 MGP_CASTEiJ_G0020284.1 mouse_genomes_project 14 12381655 12435924 + MGP_CASTEiJ_P0038100 Nid2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002505.1 MGP_CASTEiJ_G0002414.1 mouse_genomes_project 14 44847276 44847310 + TR_J_pseudogene TR_J_pseudogene MGP_CASTEiJ_T0012619.1 MGP_CASTEiJ_G0010782.1 mouse_genomes_project 14 33938369 33939372 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003403.1 MGP_CASTEiJ_G0003108.1 mouse_genomes_project 14 13224087 13243137 + 1810062O18Rik antisense antisense MGP_CASTEiJ_T0003404.1 MGP_CASTEiJ_G0003108.1 mouse_genomes_project 14 13224122 13248801 + 1810062O18Rik antisense antisense MGP_CASTEiJ_T0003405.1 MGP_CASTEiJ_G0003108.1 mouse_genomes_project 14 13224265 13243105 + 1810062O18Rik antisense antisense MGP_CASTEiJ_T0003406.1 MGP_CASTEiJ_G0003108.1 mouse_genomes_project 14 13224301 13248941 + 1810062O18Rik antisense antisense MGP_CASTEiJ_T0003407.1 MGP_CASTEiJ_G0003108.1 mouse_genomes_project 14 13243142 13248948 + 1810062O18Rik antisense antisense MGP_CASTEiJ_T0038349.1 MGP_CASTEiJ_G0020350.1 mouse_genomes_project 14 19965620 19966410 + MGP_CASTEiJ_P0038349 protein_coding protein_coding MGP_CASTEiJ_T0009752.1 MGP_CASTEiJ_G0007940.1 mouse_genomes_project 14 109385661 109385745 + Mir17 miRNA miRNA MGP_CASTEiJ_T0002534.1 MGP_CASTEiJ_G0002437.1 mouse_genomes_project 14 44078817 44079301 + MGP_CASTEiJ_P0002534 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039680.1 MGP_CASTEiJ_G0020766.1 mouse_genomes_project 14 59301787 59497083 - MGP_CASTEiJ_P0039680 Dock5 protein_coding protein_coding MGP_CASTEiJ_T0039681.1 MGP_CASTEiJ_G0020766.1 mouse_genomes_project 14 59306847 59496845 - MGP_CASTEiJ_P0039681 Dock5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039651.1 MGP_CASTEiJ_G0020758.1 mouse_genomes_project 14 58344470 58346638 + MGP_CASTEiJ_P0039651 Gm5464 protein_coding protein_coding MGP_CASTEiJ_T0040040.1 MGP_CASTEiJ_G0020892.1 mouse_genomes_project 14 97157702 97189122 - MGP_CASTEiJ_P0040040 Ednrb protein_coding protein_coding MGP_CASTEiJ_T0040041.1 MGP_CASTEiJ_G0020892.1 mouse_genomes_project 14 97157703 97188645 - MGP_CASTEiJ_P0040041 Ednrb protein_coding protein_coding MGP_CASTEiJ_T0039951.1 MGP_CASTEiJ_G0020865.1 mouse_genomes_project 14 76801140 76906404 + MGP_CASTEiJ_P0039951 Pcdh17 protein_coding protein_coding MGP_CASTEiJ_T0039952.1 MGP_CASTEiJ_G0020865.1 mouse_genomes_project 14 76802234 76903903 + MGP_CASTEiJ_P0039952 Pcdh17 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100633.1 MGP_CASTEiJ_G0037546.1 mouse_genomes_project 14 83005030 83005161 + Gm25495 snoRNA snoRNA MGP_CASTEiJ_T0012601.1 MGP_CASTEiJ_G0010764.1 mouse_genomes_project 14 7772589 7773698 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002471.1 MGP_CASTEiJ_G0002382.1 mouse_genomes_project 14 44843932 44843995 + MGP_CASTEiJ_P0002471 Traj17 TR_J_gene TR_J_gene MGP_CASTEiJ_T0012626.1 MGP_CASTEiJ_G0010789.1 mouse_genomes_project 14 36923033 36924384 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006525.1 MGP_CASTEiJ_G0005407.1 mouse_genomes_project 14 46612630 46624763 - Gm26751 lincRNA lincRNA MGP_CASTEiJ_T0002571.1 MGP_CASTEiJ_G0002471.1 mouse_genomes_project 14 44340192 44340679 + MGP_CASTEiJ_P0002571 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039364.1 MGP_CASTEiJ_G0020649.1 mouse_genomes_project 14 46972528 46977571 - MGP_CASTEiJ_P0039364 Gzmg protein_coding protein_coding MGP_CASTEiJ_T0003419.1 MGP_CASTEiJ_G0003117.1 mouse_genomes_project 14 23738162 23748947 - 1700087M22Rik antisense antisense MGP_CASTEiJ_T0002436.1 MGP_CASTEiJ_G0002349.1 mouse_genomes_project 14 44806855 44806921 + MGP_CASTEiJ_P0002436 Traj52 TR_J_gene TR_J_gene MGP_CASTEiJ_T0038354.1 MGP_CASTEiJ_G0020354.1 mouse_genomes_project 14 20399765 21307285 + MGP_CASTEiJ_P0038354 Erc2 protein_coding protein_coding MGP_CASTEiJ_T0038355.1 MGP_CASTEiJ_G0020354.1 mouse_genomes_project 14 20427910 21142224 + MGP_CASTEiJ_P0038355 Erc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012637.1 MGP_CASTEiJ_G0010800.1 mouse_genomes_project 14 47069123 47070132 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0038051.1 MGP_CASTEiJ_G0020272.1 mouse_genomes_project 14 8811557 8823963 - MGP_CASTEiJ_P0038051 Oxsm protein_coding protein_coding MGP_CASTEiJ_T0038052.1 MGP_CASTEiJ_G0020272.1 mouse_genomes_project 14 8812800 8816236 - MGP_CASTEiJ_P0038052 Oxsm protein_coding protein_coding MGP_CASTEiJ_T0038053.1 MGP_CASTEiJ_G0020272.1 mouse_genomes_project 14 8813539 8823336 - MGP_CASTEiJ_P0038053 Oxsm protein_coding protein_coding MGP_CASTEiJ_T0038054.1 MGP_CASTEiJ_G0020272.1 mouse_genomes_project 14 8815078 8823336 - MGP_CASTEiJ_P0038054 Oxsm protein_coding protein_coding MGP_CASTEiJ_T0039598.1 MGP_CASTEiJ_G0020742.1 mouse_genomes_project 14 57062981 57179678 + MGP_CASTEiJ_P0039598 Scara5 protein_coding protein_coding MGP_CASTEiJ_T0039599.1 MGP_CASTEiJ_G0020742.1 mouse_genomes_project 14 57063015 57159243 + MGP_CASTEiJ_P0039599 Scara5 protein_coding protein_coding MGP_CASTEiJ_T0039600.1 MGP_CASTEiJ_G0020742.1 mouse_genomes_project 14 57074257 57159090 + Scara5 protein_coding processed_transcript MGP_CASTEiJ_T0002478.1 MGP_CASTEiJ_G0002389.1 mouse_genomes_project 14 44853659 44853718 + MGP_CASTEiJ_P0002478 Traj7 TR_J_gene TR_J_gene MGP_CASTEiJ_T0038680.1 MGP_CASTEiJ_G0020440.1 mouse_genomes_project 14 28034720 28835082 + MGP_CASTEiJ_P0038680 Grid1 protein_coding protein_coding MGP_CASTEiJ_T0038681.1 MGP_CASTEiJ_G0020440.1 mouse_genomes_project 14 28034969 28065872 + MGP_CASTEiJ_P0038681 Grid1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012648.1 MGP_CASTEiJ_G0010811.1 mouse_genomes_project 14 51278780 51278981 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006561.1 MGP_CASTEiJ_G0005435.1 mouse_genomes_project 14 115000328 115005052 - Gm26679 lincRNA lincRNA MGP_CASTEiJ_T0038464.1 MGP_CASTEiJ_G0020380.1 mouse_genomes_project 14 24149558 24153380 - Stab1 protein_coding retained_intron MGP_CASTEiJ_T0038465.1 MGP_CASTEiJ_G0020380.1 mouse_genomes_project 14 24149558 24151413 - Stab1 protein_coding retained_intron MGP_CASTEiJ_T0038466.1 MGP_CASTEiJ_G0020380.1 mouse_genomes_project 14 24149558 24150395 - MGP_CASTEiJ_P0038466 Stab1 protein_coding protein_coding MGP_CASTEiJ_T0038467.1 MGP_CASTEiJ_G0020380.1 mouse_genomes_project 14 24149558 24179175 - MGP_CASTEiJ_P0038467 Stab1 protein_coding protein_coding MGP_CASTEiJ_T0038468.1 MGP_CASTEiJ_G0020380.1 mouse_genomes_project 14 24149562 24155999 - Stab1 protein_coding retained_intron MGP_CASTEiJ_T0038469.1 MGP_CASTEiJ_G0020380.1 mouse_genomes_project 14 24149562 24150721 - Stab1 protein_coding processed_transcript MGP_CASTEiJ_T0038470.1 MGP_CASTEiJ_G0020380.1 mouse_genomes_project 14 24149564 24154273 - Stab1 protein_coding retained_intron MGP_CASTEiJ_T0038471.1 MGP_CASTEiJ_G0020380.1 mouse_genomes_project 14 24150515 24151490 - Stab1 protein_coding retained_intron MGP_CASTEiJ_T0038472.1 MGP_CASTEiJ_G0020380.1 mouse_genomes_project 14 24152179 24153740 - MGP_CASTEiJ_P0038472 Stab1 protein_coding protein_coding MGP_CASTEiJ_T0038473.1 MGP_CASTEiJ_G0020380.1 mouse_genomes_project 14 24152928 24153545 - Stab1 protein_coding retained_intron MGP_CASTEiJ_T0038474.1 MGP_CASTEiJ_G0020380.1 mouse_genomes_project 14 24167138 24172331 - Stab1 protein_coding retained_intron MGP_CASTEiJ_T0038475.1 MGP_CASTEiJ_G0020380.1 mouse_genomes_project 14 24167138 24167886 - Stab1 protein_coding retained_intron MGP_CASTEiJ_T0038476.1 MGP_CASTEiJ_G0020380.1 mouse_genomes_project 14 24169011 24179129 - Stab1 protein_coding retained_intron MGP_CASTEiJ_T0039108.1 MGP_CASTEiJ_G0020572.1 mouse_genomes_project 14 45120293 45127620 + MGP_CASTEiJ_P0039108 Lrp10 protein_coding protein_coding MGP_CASTEiJ_T0002535.1 MGP_CASTEiJ_G0002438.1 mouse_genomes_project 14 44092715 44093238 + MGP_CASTEiJ_P0002535 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039200.1 MGP_CASTEiJ_G0020602.1 mouse_genomes_project 14 45807781 45815737 - MGP_CASTEiJ_P0039200 Ap1g2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039201.1 MGP_CASTEiJ_G0020602.1 mouse_genomes_project 14 45808053 45808592 - Ap1g2 protein_coding retained_intron MGP_CASTEiJ_T0039202.1 MGP_CASTEiJ_G0020602.1 mouse_genomes_project 14 45808053 45815470 - MGP_CASTEiJ_P0039202 Ap1g2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039203.1 MGP_CASTEiJ_G0020602.1 mouse_genomes_project 14 45808053 45815751 - MGP_CASTEiJ_P0039203 Ap1g2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039204.1 MGP_CASTEiJ_G0020602.1 mouse_genomes_project 14 45808053 45815796 - MGP_CASTEiJ_P0039204 Ap1g2 protein_coding protein_coding MGP_CASTEiJ_T0039205.1 MGP_CASTEiJ_G0020602.1 mouse_genomes_project 14 45808058 45815350 - MGP_CASTEiJ_P0039205 Ap1g2 protein_coding protein_coding MGP_CASTEiJ_T0039206.1 MGP_CASTEiJ_G0020602.1 mouse_genomes_project 14 45808257 45815335 - Ap1g2 protein_coding processed_transcript MGP_CASTEiJ_T0039207.1 MGP_CASTEiJ_G0020602.1 mouse_genomes_project 14 45809635 45809988 - Ap1g2 protein_coding retained_intron MGP_CASTEiJ_T0039208.1 MGP_CASTEiJ_G0020602.1 mouse_genomes_project 14 45811545 45813714 - Ap1g2 protein_coding retained_intron MGP_CASTEiJ_T0039209.1 MGP_CASTEiJ_G0020602.1 mouse_genomes_project 14 45811828 45814095 - Ap1g2 protein_coding retained_intron MGP_CASTEiJ_T0039210.1 MGP_CASTEiJ_G0020602.1 mouse_genomes_project 14 45814909 45815764 - Ap1g2 protein_coding retained_intron MGP_CASTEiJ_T0039211.1 MGP_CASTEiJ_G0020602.1 mouse_genomes_project 14 45815127 45815711 - Ap1g2 protein_coding processed_transcript MGP_CASTEiJ_T0038910.1 MGP_CASTEiJ_G0020526.1 mouse_genomes_project 14 42067516 42069695 + MGP_CASTEiJ_P0038910 Apex1 protein_coding protein_coding MGP_CASTEiJ_T0038911.1 MGP_CASTEiJ_G0020526.1 mouse_genomes_project 14 42067517 42069107 + MGP_CASTEiJ_P0038911 Apex1 protein_coding protein_coding MGP_CASTEiJ_T0038912.1 MGP_CASTEiJ_G0020526.1 mouse_genomes_project 14 42067518 42069695 + MGP_CASTEiJ_P0038912 Apex1 protein_coding protein_coding MGP_CASTEiJ_T0038913.1 MGP_CASTEiJ_G0020526.1 mouse_genomes_project 14 42067526 42068163 + MGP_CASTEiJ_P0038913 Apex1 protein_coding protein_coding MGP_CASTEiJ_T0039933.1 MGP_CASTEiJ_G0020857.1 mouse_genomes_project 14 71435747 71541918 + MGP_CASTEiJ_P0039933 Elf1 protein_coding protein_coding MGP_CASTEiJ_T0039934.1 MGP_CASTEiJ_G0020857.1 mouse_genomes_project 14 71472594 71541917 + MGP_CASTEiJ_P0039934 Elf1 protein_coding protein_coding MGP_CASTEiJ_T0039644.1 MGP_CASTEiJ_G0020755.1 mouse_genomes_project 14 58094219 58192624 + MGP_CASTEiJ_P0039644 Adra1a protein_coding protein_coding MGP_CASTEiJ_T0039645.1 MGP_CASTEiJ_G0020755.1 mouse_genomes_project 14 58094226 58192489 + MGP_CASTEiJ_P0039645 Adra1a protein_coding protein_coding MGP_CASTEiJ_T0039646.1 MGP_CASTEiJ_G0020755.1 mouse_genomes_project 14 58094277 58099319 + Adra1a protein_coding retained_intron MGP_CASTEiJ_T0039647.1 MGP_CASTEiJ_G0020755.1 mouse_genomes_project 14 58094309 58189149 + MGP_CASTEiJ_P0039647 Adra1a protein_coding protein_coding MGP_CASTEiJ_T0039648.1 MGP_CASTEiJ_G0020755.1 mouse_genomes_project 14 58094524 58191901 + MGP_CASTEiJ_P0039648 Adra1a protein_coding protein_coding MGP_CASTEiJ_T0002473.1 MGP_CASTEiJ_G0002384.1 mouse_genomes_project 14 44846587 44846647 + MGP_CASTEiJ_P0002473 Traj15 TR_J_gene TR_J_gene MGP_CASTEiJ_T0039121.1 MGP_CASTEiJ_G0020576.1 mouse_genomes_project 14 45232200 45242423 - MGP_CASTEiJ_P0039121 Ajuba protein_coding protein_coding MGP_CASTEiJ_T0003463.1 MGP_CASTEiJ_G0003151.1 mouse_genomes_project 14 64194500 64208920 + Gm16549 antisense antisense MGP_CASTEiJ_T0039439.1 MGP_CASTEiJ_G0020679.1 mouse_genomes_project 14 50163902 50183875 - MGP_CASTEiJ_P0039439 Gm5142 protein_coding protein_coding MGP_CASTEiJ_T0039512.1 MGP_CASTEiJ_G0020705.1 mouse_genomes_project 14 53600565 53669297 - MGP_CASTEiJ_P0039512 protein_coding protein_coding MGP_CASTEiJ_T0039513.1 MGP_CASTEiJ_G0020705.1 mouse_genomes_project 14 53600680 53669294 - MGP_CASTEiJ_P0039513 protein_coding protein_coding MGP_CASTEiJ_T0039514.1 MGP_CASTEiJ_G0020705.1 mouse_genomes_project 14 53629956 53667792 - MGP_CASTEiJ_P0039514 protein_coding protein_coding MGP_CASTEiJ_T0102072.1 MGP_CASTEiJ_G0038797.1 mouse_genomes_project 14 11416998 11417146 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0098341.1 MGP_CASTEiJ_G0035272.1 mouse_genomes_project 14 100146015 100146205 - pseudogene pseudogene MGP_CASTEiJ_T0012678.1 MGP_CASTEiJ_G0010841.1 mouse_genomes_project 14 118745320 118745861 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098507.1 MGP_CASTEiJ_G0035438.1 mouse_genomes_project 14 65578050 65578156 - Gm22164 rRNA rRNA MGP_CASTEiJ_T0003438.1 MGP_CASTEiJ_G0003134.1 mouse_genomes_project 14 45780769 45783557 + Zfhx2os antisense antisense MGP_CASTEiJ_T0009759.1 MGP_CASTEiJ_G0007947.1 mouse_genomes_project 14 112744765 112744873 + Mir6241 miRNA miRNA MGP_CASTEiJ_T0002454.1 MGP_CASTEiJ_G0002365.1 mouse_genomes_project 14 44826203 44826261 + MGP_CASTEiJ_P0002454 Traj34 TR_J_gene TR_J_gene MGP_CASTEiJ_T0002476.1 MGP_CASTEiJ_G0002387.1 mouse_genomes_project 14 44849318 44849377 + MGP_CASTEiJ_P0002476 Traj11 TR_J_gene TR_J_gene MGP_CASTEiJ_T0099400.1 MGP_CASTEiJ_G0036313.1 mouse_genomes_project 14 81957782 81957896 + Gm25886 snRNA snRNA MGP_CASTEiJ_T0038049.1 MGP_CASTEiJ_G0020271.1 mouse_genomes_project 14 7918520 7998693 - MGP_CASTEiJ_P0038049 Lrrc3b protein_coding protein_coding MGP_CASTEiJ_T0038050.1 MGP_CASTEiJ_G0020271.1 mouse_genomes_project 14 7918523 7996211 - MGP_CASTEiJ_P0038050 Lrrc3b protein_coding protein_coding MGP_CASTEiJ_T0038724.1 MGP_CASTEiJ_G0020458.1 mouse_genomes_project 14 34534326 34542659 + MGP_CASTEiJ_P0038724 Mbl1 protein_coding protein_coding MGP_CASTEiJ_T0016629.1 MGP_CASTEiJ_G0014579.1 mouse_genomes_project 14 44996 74217 + Gm16741 processed_transcript processed_transcript MGP_CASTEiJ_T0098509.1 MGP_CASTEiJ_G0035440.1 mouse_genomes_project 14 69394823 69394932 + n-R5s48 rRNA rRNA MGP_CASTEiJ_T0002481.1 MGP_CASTEiJ_G0002392.1 mouse_genomes_project 14 44858481 44858544 + MGP_CASTEiJ_P0002481 Traj4 TR_J_gene TR_J_gene MGP_CASTEiJ_T0039586.1 MGP_CASTEiJ_G0020734.1 mouse_genomes_project 14 56320329 56416071 + MGP_CASTEiJ_P0039586 protein_coding protein_coding MGP_CASTEiJ_T0038934.1 MGP_CASTEiJ_G0020536.1 mouse_genomes_project 14 42270757 42273979 + MGP_CASTEiJ_P0038934 Eddm3b protein_coding protein_coding MGP_CASTEiJ_T0039508.1 MGP_CASTEiJ_G0020704.1 mouse_genomes_project 14 53488197 53557011 + MGP_CASTEiJ_P0039508 Rnaseh2b protein_coding protein_coding MGP_CASTEiJ_T0039509.1 MGP_CASTEiJ_G0020704.1 mouse_genomes_project 14 53532408 53580216 + MGP_CASTEiJ_P0039509 Rnaseh2b protein_coding protein_coding MGP_CASTEiJ_T0039510.1 MGP_CASTEiJ_G0020704.1 mouse_genomes_project 14 53532465 53571054 + MGP_CASTEiJ_P0039510 Rnaseh2b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039511.1 MGP_CASTEiJ_G0020704.1 mouse_genomes_project 14 53548984 53558780 + Rnaseh2b protein_coding retained_intron MGP_CASTEiJ_T0000870.1 MGP_CASTEiJ_G0000809.1 mouse_genomes_project 14 38742464 38745018 + TEC TEC MGP_CASTEiJ_T0038102.1 MGP_CASTEiJ_G0020286.1 mouse_genomes_project 14 12501336 12615593 - MGP_CASTEiJ_P0038102 Gng2 protein_coding protein_coding MGP_CASTEiJ_T0038103.1 MGP_CASTEiJ_G0020286.1 mouse_genomes_project 14 12504480 12615516 - MGP_CASTEiJ_P0038103 Gng2 protein_coding protein_coding MGP_CASTEiJ_T0038104.1 MGP_CASTEiJ_G0020286.1 mouse_genomes_project 14 12504480 12615971 - MGP_CASTEiJ_P0038104 Gng2 protein_coding protein_coding MGP_CASTEiJ_T0038105.1 MGP_CASTEiJ_G0020286.1 mouse_genomes_project 14 12504521 12615408 - MGP_CASTEiJ_P0038105 Gng2 protein_coding protein_coding MGP_CASTEiJ_T0038106.1 MGP_CASTEiJ_G0020286.1 mouse_genomes_project 14 12504564 12615528 - MGP_CASTEiJ_P0038106 Gng2 protein_coding protein_coding MGP_CASTEiJ_T0038107.1 MGP_CASTEiJ_G0020286.1 mouse_genomes_project 14 12504618 12615041 - MGP_CASTEiJ_P0038107 Gng2 protein_coding protein_coding MGP_CASTEiJ_T0039179.1 MGP_CASTEiJ_G0020594.1 mouse_genomes_project 14 45628280 45631415 + MGP_CASTEiJ_P0039179 Il25 protein_coding protein_coding MGP_CASTEiJ_T0006510.1 MGP_CASTEiJ_G0005397.1 mouse_genomes_project 14 37479517 37486362 - Rubie lincRNA lincRNA MGP_CASTEiJ_T0039763.1 MGP_CASTEiJ_G0020802.1 mouse_genomes_project 14 62047838 62068364 + MGP_CASTEiJ_P0039763 Hr protein_coding unknown_likely_coding MGP_CASTEiJ_T0039764.1 MGP_CASTEiJ_G0020802.1 mouse_genomes_project 14 62047840 62050349 + Hr protein_coding processed_transcript MGP_CASTEiJ_T0039765.1 MGP_CASTEiJ_G0020802.1 mouse_genomes_project 14 62047873 62050295 + Hr protein_coding processed_transcript MGP_CASTEiJ_T0039766.1 MGP_CASTEiJ_G0020802.1 mouse_genomes_project 14 62051529 62068358 + MGP_CASTEiJ_P0039766 Hr protein_coding protein_coding MGP_CASTEiJ_T0039316.1 MGP_CASTEiJ_G0020621.1 mouse_genomes_project 14 46400294 46402667 + MGP_CASTEiJ_P0039316 Tssk4 protein_coding protein_coding MGP_CASTEiJ_T0039317.1 MGP_CASTEiJ_G0020621.1 mouse_genomes_project 14 46400296 46402667 + MGP_CASTEiJ_P0039317 Tssk4 protein_coding protein_coding MGP_CASTEiJ_T0039318.1 MGP_CASTEiJ_G0020621.1 mouse_genomes_project 14 46400461 46402576 + MGP_CASTEiJ_P0039318 Tssk4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038217.1 MGP_CASTEiJ_G0020318.1 mouse_genomes_project 14 14756082 14761705 - MGP_CASTEiJ_P0038217 Zfp503 protein_coding protein_coding MGP_CASTEiJ_T0039469.1 MGP_CASTEiJ_G0020687.1 mouse_genomes_project 14 51206319 51215151 + MGP_CASTEiJ_P0039469 4930563I02Rik protein_coding protein_coding MGP_CASTEiJ_T0039470.1 MGP_CASTEiJ_G0020687.1 mouse_genomes_project 14 51206765 51215161 + MGP_CASTEiJ_P0039470 4930563I02Rik protein_coding protein_coding MGP_CASTEiJ_T0038376.1 MGP_CASTEiJ_G0020362.1 mouse_genomes_project 14 22946648 23285532 - MGP_CASTEiJ_P0038376 Cacna1d protein_coding protein_coding MGP_CASTEiJ_T0038377.1 MGP_CASTEiJ_G0020362.1 mouse_genomes_project 14 22946648 23438302 - MGP_CASTEiJ_P0038377 Cacna1d protein_coding protein_coding MGP_CASTEiJ_T0038378.1 MGP_CASTEiJ_G0020362.1 mouse_genomes_project 14 22948695 23285236 - MGP_CASTEiJ_P0038378 Cacna1d protein_coding unknown_likely_coding MGP_CASTEiJ_T0038379.1 MGP_CASTEiJ_G0020362.1 mouse_genomes_project 14 22948774 23285171 - MGP_CASTEiJ_P0038379 Cacna1d protein_coding unknown_likely_coding MGP_CASTEiJ_T0099395.1 MGP_CASTEiJ_G0036308.1 mouse_genomes_project 14 63711653 63711787 + Gm23735 snRNA snRNA MGP_CASTEiJ_T0003465.1 MGP_CASTEiJ_G0003153.1 mouse_genomes_project 14 67559074 67560654 - Gm4285 antisense antisense MGP_CASTEiJ_T0002440.1 MGP_CASTEiJ_G0002352.1 mouse_genomes_project 14 44811366 44811427 + MGP_CASTEiJ_P0002440 Traj48 TR_J_gene TR_J_gene MGP_CASTEiJ_T0002441.1 MGP_CASTEiJ_G0002352.1 mouse_genomes_project 14 44811367 44811427 + Traj48 TR_J_gene processed_transcript MGP_CASTEiJ_T0099404.1 MGP_CASTEiJ_G0036317.1 mouse_genomes_project 14 91740664 91740771 + Gm26139 snRNA snRNA MGP_CASTEiJ_T0100601.1 MGP_CASTEiJ_G0037514.1 mouse_genomes_project 14 20312202 20312300 - Gm25697 snoRNA snoRNA MGP_CASTEiJ_T0038512.1 MGP_CASTEiJ_G0020387.1 mouse_genomes_project 14 24352896 24391572 + MGP_CASTEiJ_P0038512 Capn7 protein_coding protein_coding MGP_CASTEiJ_T0038513.1 MGP_CASTEiJ_G0020387.1 mouse_genomes_project 14 24352933 24391574 + MGP_CASTEiJ_P0038513 Capn7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038514.1 MGP_CASTEiJ_G0020387.1 mouse_genomes_project 14 24352965 24391572 + MGP_CASTEiJ_P0038514 Capn7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038780.1 MGP_CASTEiJ_G0020477.1 mouse_genomes_project 14 38096824 38133291 - MGP_CASTEiJ_P0038780 Gch1 protein_coding protein_coding MGP_CASTEiJ_T0009711.1 MGP_CASTEiJ_G0007899.1 mouse_genomes_project 14 16957922 16957976 + Mir7210 miRNA miRNA MGP_CASTEiJ_T0100623.1 MGP_CASTEiJ_G0037536.1 mouse_genomes_project 14 58457577 58457710 + Gm24258 snoRNA snoRNA MGP_CASTEiJ_T0003464.1 MGP_CASTEiJ_G0003152.1 mouse_genomes_project 14 66875822 66878712 - Gm15629 antisense antisense MGP_CASTEiJ_T0012608.1 MGP_CASTEiJ_G0010771.1 mouse_genomes_project 14 15364455 15364827 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039548.1 MGP_CASTEiJ_G0020721.1 mouse_genomes_project 14 54791972 54808620 - MGP_CASTEiJ_P0039548 Tdh protein_coding protein_coding MGP_CASTEiJ_T0039549.1 MGP_CASTEiJ_G0020721.1 mouse_genomes_project 14 54792277 54799874 - MGP_CASTEiJ_P0039549 Tdh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039550.1 MGP_CASTEiJ_G0020721.1 mouse_genomes_project 14 54792332 54799874 - MGP_CASTEiJ_P0039550 Tdh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039551.1 MGP_CASTEiJ_G0020721.1 mouse_genomes_project 14 54792332 54799874 - MGP_CASTEiJ_P0039551 Tdh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039552.1 MGP_CASTEiJ_G0020721.1 mouse_genomes_project 14 54795259 54796756 - Tdh protein_coding retained_intron MGP_CASTEiJ_T0039553.1 MGP_CASTEiJ_G0020721.1 mouse_genomes_project 14 54803440 54808284 - Tdh protein_coding processed_transcript MGP_CASTEiJ_T0038654.1 MGP_CASTEiJ_G0020431.1 mouse_genomes_project 14 27509546 27547924 + MGP_CASTEiJ_P0038654 Glud1 protein_coding protein_coding MGP_CASTEiJ_T0038655.1 MGP_CASTEiJ_G0020431.1 mouse_genomes_project 14 27528399 27535073 + Glud1 protein_coding retained_intron MGP_CASTEiJ_T0038656.1 MGP_CASTEiJ_G0020431.1 mouse_genomes_project 14 27533050 27539746 + Glud1 protein_coding processed_transcript MGP_CASTEiJ_T0038657.1 MGP_CASTEiJ_G0020431.1 mouse_genomes_project 14 27535115 27542757 + MGP_CASTEiJ_P0038657 Glud1 protein_coding protein_coding MGP_CASTEiJ_T0038658.1 MGP_CASTEiJ_G0020431.1 mouse_genomes_project 14 27536234 27542547 + Glud1 protein_coding processed_transcript MGP_CASTEiJ_T0016662.1 MGP_CASTEiJ_G0014590.1 mouse_genomes_project 14 68466845 68482006 + 1700108F19Rik processed_transcript lincRNA MGP_CASTEiJ_T0016663.1 MGP_CASTEiJ_G0014590.1 mouse_genomes_project 14 68471936 68481929 + 1700108F19Rik processed_transcript lincRNA MGP_CASTEiJ_T0016664.1 MGP_CASTEiJ_G0014590.1 mouse_genomes_project 14 68471949 68474207 + 1700108F19Rik processed_transcript retained_intron MGP_CASTEiJ_T0016665.1 MGP_CASTEiJ_G0014590.1 mouse_genomes_project 14 68471949 68481945 + 1700108F19Rik processed_transcript lincRNA MGP_CASTEiJ_T0016666.1 MGP_CASTEiJ_G0014590.1 mouse_genomes_project 14 68471977 68481932 + 1700108F19Rik processed_transcript lincRNA MGP_CASTEiJ_T0016667.1 MGP_CASTEiJ_G0014590.1 mouse_genomes_project 14 68471980 68474753 + 1700108F19Rik processed_transcript lincRNA MGP_CASTEiJ_T0016668.1 MGP_CASTEiJ_G0014590.1 mouse_genomes_project 14 68472024 68474753 + 1700108F19Rik processed_transcript lincRNA MGP_CASTEiJ_T0016669.1 MGP_CASTEiJ_G0014590.1 mouse_genomes_project 14 68476651 68481724 + 1700108F19Rik processed_transcript lincRNA MGP_CASTEiJ_T0016637.1 MGP_CASTEiJ_G0014582.1 mouse_genomes_project 14 35795585 35801670 - 4930431P03Rik processed_transcript retained_intron MGP_CASTEiJ_T0016638.1 MGP_CASTEiJ_G0014582.1 mouse_genomes_project 14 35796785 35801670 - 4930431P03Rik processed_transcript antisense MGP_CASTEiJ_T0012658.1 MGP_CASTEiJ_G0010821.1 mouse_genomes_project 14 66392995 66406824 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012599.1 MGP_CASTEiJ_G0010762.1 mouse_genomes_project 14 5306910 5307229 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039880.1 MGP_CASTEiJ_G0020839.1 mouse_genomes_project 14 68199648 68296829 + MGP_CASTEiJ_P0039880 Tsc22d1 protein_coding protein_coding MGP_CASTEiJ_T0039881.1 MGP_CASTEiJ_G0020839.1 mouse_genomes_project 14 68200274 68296829 + MGP_CASTEiJ_P0039881 Tsc22d1 protein_coding protein_coding MGP_CASTEiJ_T0039882.1 MGP_CASTEiJ_G0020839.1 mouse_genomes_project 14 68200801 68201331 + Tsc22d1 protein_coding processed_transcript MGP_CASTEiJ_T0039883.1 MGP_CASTEiJ_G0020839.1 mouse_genomes_project 14 68203041 68227062 + MGP_CASTEiJ_P0039883 Tsc22d1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039884.1 MGP_CASTEiJ_G0020839.1 mouse_genomes_project 14 68203335 68224430 + MGP_CASTEiJ_P0039884 Tsc22d1 protein_coding protein_coding MGP_CASTEiJ_T0039885.1 MGP_CASTEiJ_G0020839.1 mouse_genomes_project 14 68203338 68225771 + MGP_CASTEiJ_P0039885 Tsc22d1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039886.1 MGP_CASTEiJ_G0020839.1 mouse_genomes_project 14 68203515 68225844 + MGP_CASTEiJ_P0039886 Tsc22d1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039887.1 MGP_CASTEiJ_G0020839.1 mouse_genomes_project 14 68223196 68225813 + Tsc22d1 protein_coding processed_transcript MGP_CASTEiJ_T0039888.1 MGP_CASTEiJ_G0020839.1 mouse_genomes_project 14 68224363 68225813 + Tsc22d1 protein_coding retained_intron MGP_CASTEiJ_T0039889.1 MGP_CASTEiJ_G0020839.1 mouse_genomes_project 14 68264529 68295996 + MGP_CASTEiJ_P0039889 Tsc22d1 protein_coding protein_coding MGP_CASTEiJ_T0039890.1 MGP_CASTEiJ_G0020839.1 mouse_genomes_project 14 68276969 68296064 + MGP_CASTEiJ_P0039890 Tsc22d1 protein_coding protein_coding MGP_CASTEiJ_T0039891.1 MGP_CASTEiJ_G0020839.1 mouse_genomes_project 14 68277652 68296237 + MGP_CASTEiJ_P0039891 Tsc22d1 protein_coding protein_coding MGP_CASTEiJ_T0039892.1 MGP_CASTEiJ_G0020839.1 mouse_genomes_project 14 68293278 68296830 + MGP_CASTEiJ_P0039892 Tsc22d1 protein_coding protein_coding MGP_CASTEiJ_T0039893.1 MGP_CASTEiJ_G0020839.1 mouse_genomes_project 14 68293542 68296832 + MGP_CASTEiJ_P0039893 Tsc22d1 protein_coding protein_coding MGP_CASTEiJ_T0039894.1 MGP_CASTEiJ_G0020839.1 mouse_genomes_project 14 68293594 68294803 + MGP_CASTEiJ_P0039894 Tsc22d1 protein_coding protein_coding MGP_CASTEiJ_T0039895.1 MGP_CASTEiJ_G0020839.1 mouse_genomes_project 14 68294162 68296068 + MGP_CASTEiJ_P0039895 Tsc22d1 protein_coding protein_coding MGP_CASTEiJ_T0040045.1 MGP_CASTEiJ_G0020895.1 mouse_genomes_project 14 98508719 98539724 - MGP_CASTEiJ_P0040045 Rbm26 protein_coding protein_coding MGP_CASTEiJ_T0040046.1 MGP_CASTEiJ_G0020895.1 mouse_genomes_project 14 98518084 98592844 - MGP_CASTEiJ_P0040046 Rbm26 protein_coding protein_coding MGP_CASTEiJ_T0040047.1 MGP_CASTEiJ_G0020895.1 mouse_genomes_project 14 98518105 98593307 - MGP_CASTEiJ_P0040047 Rbm26 protein_coding protein_coding MGP_CASTEiJ_T0040048.1 MGP_CASTEiJ_G0020895.1 mouse_genomes_project 14 98518182 98593311 - MGP_CASTEiJ_P0040048 Rbm26 protein_coding protein_coding MGP_CASTEiJ_T0040049.1 MGP_CASTEiJ_G0020895.1 mouse_genomes_project 14 98520560 98593248 - MGP_CASTEiJ_P0040049 Rbm26 protein_coding protein_coding MGP_CASTEiJ_T0038727.1 MGP_CASTEiJ_G0020461.1 mouse_genomes_project 14 35840655 35864540 + MGP_CASTEiJ_P0038727 Ptger2 protein_coding protein_coding MGP_CASTEiJ_T0000867.1 MGP_CASTEiJ_G0000806.1 mouse_genomes_project 14 14695286 14715572 + TEC TEC MGP_CASTEiJ_T0002443.1 MGP_CASTEiJ_G0002354.1 mouse_genomes_project 14 44813909 44813972 + MGP_CASTEiJ_P0002443 Traj46 TR_J_gene TR_J_gene MGP_CASTEiJ_T0038364.1 MGP_CASTEiJ_G0020357.1 mouse_genomes_project 14 21879539 21895009 + MGP_CASTEiJ_P0038364 Lrtm1 protein_coding protein_coding MGP_CASTEiJ_T0002524.1 MGP_CASTEiJ_G0002428.1 mouse_genomes_project 14 43882873 43883380 + MGP_CASTEiJ_P0002524 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039656.1 MGP_CASTEiJ_G0020760.1 mouse_genomes_project 14 58473276 58499991 - MGP_CASTEiJ_P0039656 Bnip3l protein_coding protein_coding MGP_CASTEiJ_T0039657.1 MGP_CASTEiJ_G0020760.1 mouse_genomes_project 14 58476846 58499919 - MGP_CASTEiJ_P0039657 Bnip3l protein_coding protein_coding MGP_CASTEiJ_T0039658.1 MGP_CASTEiJ_G0020760.1 mouse_genomes_project 14 58478878 58491092 - Bnip3l protein_coding processed_transcript MGP_CASTEiJ_T0039659.1 MGP_CASTEiJ_G0020760.1 mouse_genomes_project 14 58479057 58491693 - Bnip3l protein_coding processed_transcript MGP_CASTEiJ_T0039660.1 MGP_CASTEiJ_G0020760.1 mouse_genomes_project 14 58484736 58490845 - Bnip3l protein_coding retained_intron MGP_CASTEiJ_T0002499.1 MGP_CASTEiJ_G0002408.1 mouse_genomes_project 14 44796593 44796666 + TR_J_pseudogene TR_J_pseudogene MGP_CASTEiJ_T0037969.1 MGP_CASTEiJ_G0020241.1 mouse_genomes_project 14 120404 263297 + MGP_CASTEiJ_P0037969 Flnb protein_coding protein_coding MGP_CASTEiJ_T0037970.1 MGP_CASTEiJ_G0020241.1 mouse_genomes_project 14 120450 247089 + MGP_CASTEiJ_P0037970 Flnb protein_coding unknown_likely_coding MGP_CASTEiJ_T0102077.1 MGP_CASTEiJ_G0038802.1 mouse_genomes_project 14 41519152 41519435 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0009719.1 MGP_CASTEiJ_G0007907.1 mouse_genomes_project 14 35786650 35786719 - Mir327 miRNA miRNA MGP_CASTEiJ_T0006490.1 MGP_CASTEiJ_G0005383.1 mouse_genomes_project 14 18263117 18285709 - Gm26660 lincRNA lincRNA MGP_CASTEiJ_T0038850.1 MGP_CASTEiJ_G0020490.1 mouse_genomes_project 14 40156153 40176813 + MGP_CASTEiJ_P0038850 Ap5m1 protein_coding protein_coding MGP_CASTEiJ_T0002629.1 MGP_CASTEiJ_G0002519.1 mouse_genomes_project 14 44511011 44511557 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0006508.1 MGP_CASTEiJ_G0005395.1 mouse_genomes_project 14 37338663 37356295 + Gm15221 lincRNA lincRNA MGP_CASTEiJ_T0040018.1 MGP_CASTEiJ_G0020887.1 mouse_genomes_project 14 96388685 96396064 + MGP_CASTEiJ_P0040018 Cln5 protein_coding protein_coding MGP_CASTEiJ_T0100648.1 MGP_CASTEiJ_G0037561.1 mouse_genomes_project 14 99945581 99945688 - Gm24634 snoRNA snoRNA MGP_CASTEiJ_T0002464.1 MGP_CASTEiJ_G0002375.1 mouse_genomes_project 14 44838022 44838085 + MGP_CASTEiJ_P0002464 Traj24 TR_J_gene TR_J_gene MGP_CASTEiJ_T0002452.1 MGP_CASTEiJ_G0002363.1 mouse_genomes_project 14 44822998 44823058 + MGP_CASTEiJ_P0002452 Traj37 TR_J_gene TR_J_gene MGP_CASTEiJ_T0002500.1 MGP_CASTEiJ_G0002409.1 mouse_genomes_project 14 44797522 44797576 + TR_J_pseudogene TR_J_pseudogene MGP_CASTEiJ_T0039126.1 MGP_CASTEiJ_G0020581.1 mouse_genomes_project 14 45301094 45301545 + MGP_CASTEiJ_P0039126 Gm20726 protein_coding protein_coding MGP_CASTEiJ_T0038477.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24181473 24192018 - MGP_CASTEiJ_P0038477 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038478.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24181807 24198293 - MGP_CASTEiJ_P0038478 protein_coding protein_coding MGP_CASTEiJ_T0038479.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24181915 24184841 - MGP_CASTEiJ_P0038479 protein_coding protein_coding MGP_CASTEiJ_T0038480.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24182563 24184287 - MGP_CASTEiJ_P0038480 protein_coding protein_coding MGP_CASTEiJ_T0038481.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24187449 24214476 - MGP_CASTEiJ_P0038481 protein_coding protein_coding MGP_CASTEiJ_T0038482.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24187759 24192544 - MGP_CASTEiJ_P0038482 protein_coding protein_coding MGP_CASTEiJ_T0038483.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24187945 24196391 - MGP_CASTEiJ_P0038483 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038484.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24188054 24203699 - protein_coding processed_transcript MGP_CASTEiJ_T0038485.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24188252 24196711 - protein_coding processed_transcript MGP_CASTEiJ_T0038486.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24191923 24193903 - protein_coding processed_transcript MGP_CASTEiJ_T0038487.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24194387 24217960 - MGP_CASTEiJ_P0038487 protein_coding protein_coding MGP_CASTEiJ_T0038488.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24194587 24196018 - protein_coding processed_transcript MGP_CASTEiJ_T0038489.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24196079 24202580 - MGP_CASTEiJ_P0038489 protein_coding protein_coding MGP_CASTEiJ_T0038490.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24196758 24217834 - MGP_CASTEiJ_P0038490 protein_coding protein_coding MGP_CASTEiJ_T0038491.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24196794 24217834 - MGP_CASTEiJ_P0038491 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038492.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24197449 24198538 - protein_coding processed_transcript MGP_CASTEiJ_T0038493.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24198198 24214397 - MGP_CASTEiJ_P0038493 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038494.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24199424 24202172 - protein_coding retained_intron MGP_CASTEiJ_T0038495.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24212030 24217834 - protein_coding processed_transcript MGP_CASTEiJ_T0038496.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24212951 24217835 - MGP_CASTEiJ_P0038496 protein_coding protein_coding MGP_CASTEiJ_T0038497.1 MGP_CASTEiJ_G0020381.1 mouse_genomes_project 14 24214391 24227998 - protein_coding processed_transcript MGP_CASTEiJ_T0039907.1 MGP_CASTEiJ_G0020845.1 mouse_genomes_project 14 69707642 69763284 - MGP_CASTEiJ_P0039907 Dnajc15 protein_coding protein_coding MGP_CASTEiJ_T0039908.1 MGP_CASTEiJ_G0020845.1 mouse_genomes_project 14 69707843 69763304 - MGP_CASTEiJ_P0039908 Dnajc15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012651.1 MGP_CASTEiJ_G0010814.1 mouse_genomes_project 14 56210939 56211258 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039393.1 MGP_CASTEiJ_G0020666.1 mouse_genomes_project 14 48193253 48319988 - MGP_CASTEiJ_P0039393 Cryl1 protein_coding protein_coding MGP_CASTEiJ_T0039458.1 MGP_CASTEiJ_G0020684.1 mouse_genomes_project 14 50676586 50713126 - MGP_CASTEiJ_P0039458 Cdadc1 protein_coding protein_coding MGP_CASTEiJ_T0039459.1 MGP_CASTEiJ_G0020684.1 mouse_genomes_project 14 50676586 50713126 - MGP_CASTEiJ_P0039459 Cdadc1 protein_coding protein_coding MGP_CASTEiJ_T0039460.1 MGP_CASTEiJ_G0020684.1 mouse_genomes_project 14 50680185 50713126 - MGP_CASTEiJ_P0039460 Cdadc1 protein_coding protein_coding MGP_CASTEiJ_T0039461.1 MGP_CASTEiJ_G0020684.1 mouse_genomes_project 14 50683467 50713126 - MGP_CASTEiJ_P0039461 Cdadc1 protein_coding protein_coding MGP_CASTEiJ_T0039462.1 MGP_CASTEiJ_G0020684.1 mouse_genomes_project 14 50687278 50713126 - MGP_CASTEiJ_P0039462 Cdadc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0002619.1 MGP_CASTEiJ_G0002509.1 mouse_genomes_project 14 44092776 44093238 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0009709.1 MGP_CASTEiJ_G0007897.1 mouse_genomes_project 14 10760769 10760848 + Gm44469 miRNA miRNA MGP_CASTEiJ_T0038150.1 MGP_CASTEiJ_G0020302.1 mouse_genomes_project 14 13360648 13381046 + MGP_CASTEiJ_P0038150 Sec24c protein_coding protein_coding MGP_CASTEiJ_T0038151.1 MGP_CASTEiJ_G0020302.1 mouse_genomes_project 14 13360658 13381053 + MGP_CASTEiJ_P0038151 Sec24c protein_coding unknown_likely_coding MGP_CASTEiJ_T0039980.1 MGP_CASTEiJ_G0020876.1 mouse_genomes_project 14 92227317 92390909 + MGP_CASTEiJ_P0039980 Pibf1 protein_coding protein_coding MGP_CASTEiJ_T0009710.1 MGP_CASTEiJ_G0007898.1 mouse_genomes_project 14 14797873 14797986 - Gm27532 miRNA miRNA MGP_CASTEiJ_T0006506.1 MGP_CASTEiJ_G0005393.1 mouse_genomes_project 14 36560218 36562098 - A530076I17Rik lincRNA lincRNA MGP_CASTEiJ_T0009720.1 MGP_CASTEiJ_G0007908.1 mouse_genomes_project 14 36551554 36551647 - Mir5131 miRNA miRNA MGP_CASTEiJ_T0009716.1 MGP_CASTEiJ_G0007904.1 mouse_genomes_project 14 22893871 22893936 + Mir6947 miRNA miRNA MGP_CASTEiJ_T0039249.1 MGP_CASTEiJ_G0020613.1 mouse_genomes_project 14 46321812 46325074 + MGP_CASTEiJ_P0039249 Psme1 protein_coding protein_coding MGP_CASTEiJ_T0039250.1 MGP_CASTEiJ_G0020613.1 mouse_genomes_project 14 46322049 46325256 + MGP_CASTEiJ_P0039250 Psme1 protein_coding protein_coding MGP_CASTEiJ_T0039251.1 MGP_CASTEiJ_G0020613.1 mouse_genomes_project 14 46322094 46324370 + Psme1 protein_coding retained_intron MGP_CASTEiJ_T0039252.1 MGP_CASTEiJ_G0020613.1 mouse_genomes_project 14 46322145 46325256 + Psme1 protein_coding retained_intron MGP_CASTEiJ_T0039253.1 MGP_CASTEiJ_G0020613.1 mouse_genomes_project 14 46322157 46325102 + Psme1 protein_coding retained_intron MGP_CASTEiJ_T0039254.1 MGP_CASTEiJ_G0020613.1 mouse_genomes_project 14 46322175 46324086 + Psme1 protein_coding retained_intron MGP_CASTEiJ_T0039255.1 MGP_CASTEiJ_G0020613.1 mouse_genomes_project 14 46322227 46324670 + MGP_CASTEiJ_P0039255 Psme1 protein_coding protein_coding MGP_CASTEiJ_T0039256.1 MGP_CASTEiJ_G0020613.1 mouse_genomes_project 14 46322263 46325109 + MGP_CASTEiJ_P0039256 Psme1 protein_coding protein_coding MGP_CASTEiJ_T0039257.1 MGP_CASTEiJ_G0020613.1 mouse_genomes_project 14 46322263 46325109 + MGP_CASTEiJ_P0039257 Psme1 protein_coding protein_coding MGP_CASTEiJ_T0039258.1 MGP_CASTEiJ_G0020613.1 mouse_genomes_project 14 46323661 46325179 + Psme1 protein_coding retained_intron MGP_CASTEiJ_T0039259.1 MGP_CASTEiJ_G0020613.1 mouse_genomes_project 14 46323731 46324675 + Psme1 protein_coding retained_intron MGP_CASTEiJ_T0039260.1 MGP_CASTEiJ_G0020613.1 mouse_genomes_project 14 46324475 46325257 + MGP_CASTEiJ_P0039260 Psme1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009746.1 MGP_CASTEiJ_G0007934.1 mouse_genomes_project 14 90069015 90069120 - Gm27441 miRNA miRNA MGP_CASTEiJ_T0038352.1 MGP_CASTEiJ_G0020352.1 mouse_genomes_project 14 20199225 20263421 + MGP_CASTEiJ_P0038352 Fam208a protein_coding protein_coding MGP_CASTEiJ_T0038661.1 MGP_CASTEiJ_G0020434.1 mouse_genomes_project 14 27578940 27603563 + MGP_CASTEiJ_P0038661 Mmrn2 protein_coding protein_coding MGP_CASTEiJ_T0099393.1 MGP_CASTEiJ_G0036306.1 mouse_genomes_project 14 54370862 54370949 + Gm23629 snRNA snRNA MGP_CASTEiJ_T0100617.1 MGP_CASTEiJ_G0037530.1 mouse_genomes_project 14 48253723 48253843 - Gm23593 snoRNA snoRNA MGP_CASTEiJ_T0040120.1 MGP_CASTEiJ_G0020924.1 mouse_genomes_project 14 116663084 116667251 - MGP_CASTEiJ_P0040120 Gpr18 protein_coding protein_coding MGP_CASTEiJ_T0039344.1 MGP_CASTEiJ_G0020635.1 mouse_genomes_project 14 46569921 46579029 + MGP_CASTEiJ_P0039344 Nfatc4 protein_coding protein_coding MGP_CASTEiJ_T0039345.1 MGP_CASTEiJ_G0020635.1 mouse_genomes_project 14 46569921 46579029 + MGP_CASTEiJ_P0039345 Nfatc4 protein_coding protein_coding MGP_CASTEiJ_T0002457.1 MGP_CASTEiJ_G0002368.1 mouse_genomes_project 14 44829320 44829377 + MGP_CASTEiJ_P0002457 Traj31 TR_J_gene TR_J_gene MGP_CASTEiJ_T0038224.1 MGP_CASTEiJ_G0020320.1 mouse_genomes_project 14 16118942 16656905 - MGP_CASTEiJ_P0038224 Kcnma1 protein_coding protein_coding MGP_CASTEiJ_T0038225.1 MGP_CASTEiJ_G0020320.1 mouse_genomes_project 14 16118942 16656905 - MGP_CASTEiJ_P0038225 Kcnma1 protein_coding protein_coding MGP_CASTEiJ_T0038226.1 MGP_CASTEiJ_G0020320.1 mouse_genomes_project 14 16128179 16656905 - MGP_CASTEiJ_P0038226 Kcnma1 protein_coding protein_coding MGP_CASTEiJ_T0038227.1 MGP_CASTEiJ_G0020320.1 mouse_genomes_project 14 16128179 16656905 - MGP_CASTEiJ_P0038227 Kcnma1 protein_coding protein_coding MGP_CASTEiJ_T0038228.1 MGP_CASTEiJ_G0020320.1 mouse_genomes_project 14 16128179 16656905 - MGP_CASTEiJ_P0038228 Kcnma1 protein_coding protein_coding MGP_CASTEiJ_T0038229.1 MGP_CASTEiJ_G0020320.1 mouse_genomes_project 14 16128882 16869428 - MGP_CASTEiJ_P0038229 Kcnma1 protein_coding protein_coding MGP_CASTEiJ_T0038230.1 MGP_CASTEiJ_G0020320.1 mouse_genomes_project 14 16128894 16870082 - MGP_CASTEiJ_P0038230 Kcnma1 protein_coding protein_coding MGP_CASTEiJ_T0038231.1 MGP_CASTEiJ_G0020320.1 mouse_genomes_project 14 16128894 16656905 - MGP_CASTEiJ_P0038231 Kcnma1 protein_coding protein_coding MGP_CASTEiJ_T0038232.1 MGP_CASTEiJ_G0020320.1 mouse_genomes_project 14 16128894 16493883 - MGP_CASTEiJ_P0038232 Kcnma1 protein_coding protein_coding MGP_CASTEiJ_T0038233.1 MGP_CASTEiJ_G0020320.1 mouse_genomes_project 14 16129391 16869428 - MGP_CASTEiJ_P0038233 Kcnma1 protein_coding protein_coding MGP_CASTEiJ_T0038234.1 MGP_CASTEiJ_G0020320.1 mouse_genomes_project 14 16129391 16869200 - MGP_CASTEiJ_P0038234 Kcnma1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038235.1 MGP_CASTEiJ_G0020320.1 mouse_genomes_project 14 16129521 16869348 - MGP_CASTEiJ_P0038235 Kcnma1 protein_coding protein_coding MGP_CASTEiJ_T0038236.1 MGP_CASTEiJ_G0020320.1 mouse_genomes_project 14 16138808 16369059 - MGP_CASTEiJ_P0038236 Kcnma1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038237.1 MGP_CASTEiJ_G0020320.1 mouse_genomes_project 14 16139027 16656905 - MGP_CASTEiJ_P0038237 Kcnma1 protein_coding protein_coding MGP_CASTEiJ_T0038238.1 MGP_CASTEiJ_G0020320.1 mouse_genomes_project 14 16139027 16656905 - MGP_CASTEiJ_P0038238 Kcnma1 protein_coding protein_coding MGP_CASTEiJ_T0038239.1 MGP_CASTEiJ_G0020320.1 mouse_genomes_project 14 16867875 16869521 - MGP_CASTEiJ_P0038239 Kcnma1 protein_coding protein_coding MGP_CASTEiJ_T0039906.1 MGP_CASTEiJ_G0020844.1 mouse_genomes_project 14 69676598 69680650 - MGP_CASTEiJ_P0039906 Gm1587 protein_coding protein_coding MGP_CASTEiJ_T0039925.1 MGP_CASTEiJ_G0020854.1 mouse_genomes_project 14 71278219 71288282 - Naa16 protein_coding retained_intron MGP_CASTEiJ_T0039926.1 MGP_CASTEiJ_G0020854.1 mouse_genomes_project 14 71278534 71340675 - MGP_CASTEiJ_P0039926 Naa16 protein_coding protein_coding MGP_CASTEiJ_T0039927.1 MGP_CASTEiJ_G0020854.1 mouse_genomes_project 14 71286061 71335833 - MGP_CASTEiJ_P0039927 Naa16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039928.1 MGP_CASTEiJ_G0020854.1 mouse_genomes_project 14 71290511 71340512 - MGP_CASTEiJ_P0039928 Naa16 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039929.1 MGP_CASTEiJ_G0020854.1 mouse_genomes_project 14 71314235 71340589 - MGP_CASTEiJ_P0039929 Naa16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039930.1 MGP_CASTEiJ_G0020854.1 mouse_genomes_project 14 71333336 71340587 - Naa16 protein_coding retained_intron MGP_CASTEiJ_T0038899.1 MGP_CASTEiJ_G0020522.1 mouse_genomes_project 14 41960208 42008504 - MGP_CASTEiJ_P0038899 Tep1 protein_coding protein_coding MGP_CASTEiJ_T0016636.1 MGP_CASTEiJ_G0014581.1 mouse_genomes_project 14 35692695 35798772 + processed_transcript processed_transcript MGP_CASTEiJ_T0039693.1 MGP_CASTEiJ_G0020775.1 mouse_genomes_project 14 60855503 60902035 - MGP_CASTEiJ_P0039693 Slc25a37 protein_coding protein_coding MGP_CASTEiJ_T0039694.1 MGP_CASTEiJ_G0020775.1 mouse_genomes_project 14 60855506 60902035 - Slc25a37 protein_coding retained_intron MGP_CASTEiJ_T0039695.1 MGP_CASTEiJ_G0020775.1 mouse_genomes_project 14 60857830 60901890 - MGP_CASTEiJ_P0039695 Slc25a37 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038989.1 MGP_CASTEiJ_G0020547.1 mouse_genomes_project 14 43225534 43239833 - MGP_CASTEiJ_P0038989 Zfp219 protein_coding protein_coding MGP_CASTEiJ_T0038990.1 MGP_CASTEiJ_G0020547.1 mouse_genomes_project 14 43225543 43238779 - MGP_CASTEiJ_P0038990 Zfp219 protein_coding protein_coding MGP_CASTEiJ_T0039427.1 MGP_CASTEiJ_G0020674.1 mouse_genomes_project 14 48788271 48790796 + MGP_CASTEiJ_P0039427 Mrpl57 protein_coding protein_coding MGP_CASTEiJ_T0039914.1 MGP_CASTEiJ_G0020848.1 mouse_genomes_project 14 70189992 70228946 - MGP_CASTEiJ_P0039914 Tnfsf11 protein_coding protein_coding MGP_CASTEiJ_T0038187.1 MGP_CASTEiJ_G0020313.1 mouse_genomes_project 14 14425857 14463895 - MGP_CASTEiJ_P0038187 Dupd1 protein_coding protein_coding MGP_CASTEiJ_T0003417.1 MGP_CASTEiJ_G0003115.1 mouse_genomes_project 14 19333636 19344659 - Arf4os antisense antisense MGP_CASTEiJ_T0003446.1 MGP_CASTEiJ_G0003140.1 mouse_genomes_project 14 52431304 52443351 - 1700109G14Rik antisense antisense MGP_CASTEiJ_T0003447.1 MGP_CASTEiJ_G0003140.1 mouse_genomes_project 14 52432966 52454884 - 1700109G14Rik antisense antisense MGP_CASTEiJ_T0003448.1 MGP_CASTEiJ_G0003140.1 mouse_genomes_project 14 52442841 52443325 - 1700109G14Rik antisense antisense MGP_CASTEiJ_T0039341.1 MGP_CASTEiJ_G0020634.1 mouse_genomes_project 14 46543426 46547291 - MGP_CASTEiJ_P0039341 Ripk3 protein_coding protein_coding MGP_CASTEiJ_T0039342.1 MGP_CASTEiJ_G0020634.1 mouse_genomes_project 14 46543426 46547291 - MGP_CASTEiJ_P0039342 Ripk3 protein_coding protein_coding MGP_CASTEiJ_T0039343.1 MGP_CASTEiJ_G0020634.1 mouse_genomes_project 14 46543426 46547291 - MGP_CASTEiJ_P0039343 Ripk3 protein_coding protein_coding MGP_CASTEiJ_T0040044.1 MGP_CASTEiJ_G0020894.1 mouse_genomes_project 14 97856850 97903406 - MGP_CASTEiJ_P0040044 Rnf219 protein_coding protein_coding MGP_CASTEiJ_T0016674.1 MGP_CASTEiJ_G0014593.1 mouse_genomes_project 14 98512511 98517796 - Gm17066 processed_transcript processed_transcript MGP_CASTEiJ_T0016675.1 MGP_CASTEiJ_G0014593.1 mouse_genomes_project 14 98512530 98517578 - Gm17066 processed_transcript processed_transcript MGP_CASTEiJ_T0000879.1 MGP_CASTEiJ_G0000818.1 mouse_genomes_project 14 56207695 56211099 - TEC TEC MGP_CASTEiJ_T0009730.1 MGP_CASTEiJ_G0007918.1 mouse_genomes_project 14 52781977 52782070 - Mir16-1 miRNA miRNA MGP_CASTEiJ_T0011044.1 MGP_CASTEiJ_G0009232.1 mouse_genomes_project 14 52778184 52778299 + Gm27845 misc_RNA misc_RNA MGP_CASTEiJ_T0038028.1 MGP_CASTEiJ_G0020262.1 mouse_genomes_project 14 6565120 6657260 + MGP_CASTEiJ_P0038028 Atxn7 protein_coding protein_coding MGP_CASTEiJ_T0002421.1 MGP_CASTEiJ_G0002336.1 mouse_genomes_project 14 44768278 44768294 + MGP_CASTEiJ_P0002421 Trdd2 TR_D_gene TR_D_gene MGP_CASTEiJ_T0039932.1 MGP_CASTEiJ_G0020856.1 mouse_genomes_project 14 71412558 71435822 - MGP_CASTEiJ_P0039932 Wbp4 protein_coding protein_coding MGP_CASTEiJ_T0009715.1 MGP_CASTEiJ_G0007903.1 mouse_genomes_project 14 20145830 20145944 - Gm23633 miRNA miRNA MGP_CASTEiJ_T0039698.1 MGP_CASTEiJ_G0020778.1 mouse_genomes_project 14 60907297 60911181 - MGP_CASTEiJ_P0039698 protein_coding protein_coding MGP_CASTEiJ_T0038695.1 MGP_CASTEiJ_G0020444.1 mouse_genomes_project 14 30377250 30389883 - MGP_CASTEiJ_P0038695 Rgr protein_coding protein_coding MGP_CASTEiJ_T0002469.1 MGP_CASTEiJ_G0002380.1 mouse_genomes_project 14 44842549 44842610 + MGP_CASTEiJ_P0002469 Traj19 TR_J_gene TR_J_gene MGP_CASTEiJ_T0100647.1 MGP_CASTEiJ_G0037560.1 mouse_genomes_project 14 98372863 98372997 + Gm24280 snoRNA snoRNA MGP_CASTEiJ_T0039463.1 MGP_CASTEiJ_G0020685.1 mouse_genomes_project 14 50744815 50751174 + MGP_CASTEiJ_P0039463 Shisa2 protein_coding protein_coding MGP_CASTEiJ_T0003457.1 MGP_CASTEiJ_G0003149.1 mouse_genomes_project 14 60966027 60971242 - Gm27221 antisense antisense MGP_CASTEiJ_T0002584.1 MGP_CASTEiJ_G0002481.1 mouse_genomes_project 14 44583931 44584521 + MGP_CASTEiJ_P0002584 Trdv2-1 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002585.1 MGP_CASTEiJ_G0002481.1 mouse_genomes_project 14 44583931 44584521 + MGP_CASTEiJ_P0002585 Trdv2-1 TR_V_gene TR_V_gene MGP_CASTEiJ_T0009717.1 MGP_CASTEiJ_G0007905.1 mouse_genomes_project 14 23526442 23526502 + Mir3076 miRNA miRNA MGP_CASTEiJ_T0039650.1 MGP_CASTEiJ_G0020757.1 mouse_genomes_project 14 58268308 58344309 - MGP_CASTEiJ_P0039650 Dpysl2 protein_coding protein_coding MGP_CASTEiJ_T0002536.1 MGP_CASTEiJ_G0002439.1 mouse_genomes_project 14 44092776 44093238 + MGP_CASTEiJ_P0002536 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039772.1 MGP_CASTEiJ_G0020806.1 mouse_genomes_project 14 62133767 62139829 - MGP_CASTEiJ_P0039772 Fgf17 protein_coding protein_coding MGP_CASTEiJ_T0038398.1 MGP_CASTEiJ_G0020366.1 mouse_genomes_project 14 23617039 23659100 + MGP_CASTEiJ_P0038398 Rft1 protein_coding protein_coding MGP_CASTEiJ_T0038399.1 MGP_CASTEiJ_G0020366.1 mouse_genomes_project 14 23617054 23624029 + Rft1 protein_coding processed_transcript MGP_CASTEiJ_T0038400.1 MGP_CASTEiJ_G0020366.1 mouse_genomes_project 14 23617062 23626066 + Rft1 protein_coding processed_transcript MGP_CASTEiJ_T0038401.1 MGP_CASTEiJ_G0020366.1 mouse_genomes_project 14 23617066 23627239 + Rft1 protein_coding retained_intron MGP_CASTEiJ_T0038402.1 MGP_CASTEiJ_G0020366.1 mouse_genomes_project 14 23617086 23659100 + MGP_CASTEiJ_P0038402 Rft1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038403.1 MGP_CASTEiJ_G0020366.1 mouse_genomes_project 14 23617086 23659100 + MGP_CASTEiJ_P0038403 Rft1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038404.1 MGP_CASTEiJ_G0020366.1 mouse_genomes_project 14 23644975 23657740 + Rft1 protein_coding processed_transcript MGP_CASTEiJ_T0102081.1 MGP_CASTEiJ_G0038806.1 mouse_genomes_project 14 52312036 52338300 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100652.1 MGP_CASTEiJ_G0037565.1 mouse_genomes_project 14 112787662 112787790 + Gm23669 snoRNA snoRNA MGP_CASTEiJ_T0009743.1 MGP_CASTEiJ_G0007931.1 mouse_genomes_project 14 66946656 66946758 + Gm44482 miRNA miRNA MGP_CASTEiJ_T0039157.1 MGP_CASTEiJ_G0020587.1 mouse_genomes_project 14 45541536 45549285 - MGP_CASTEiJ_P0039157 Homez protein_coding protein_coding MGP_CASTEiJ_T0039158.1 MGP_CASTEiJ_G0020587.1 mouse_genomes_project 14 45542587 45553841 - MGP_CASTEiJ_P0039158 Homez protein_coding protein_coding MGP_CASTEiJ_T0039159.1 MGP_CASTEiJ_G0020587.1 mouse_genomes_project 14 45544355 45546001 - MGP_CASTEiJ_P0039159 Homez protein_coding protein_coding MGP_CASTEiJ_T0039160.1 MGP_CASTEiJ_G0020587.1 mouse_genomes_project 14 45546712 45560605 - MGP_CASTEiJ_P0039160 Homez protein_coding protein_coding MGP_CASTEiJ_T0038502.1 MGP_CASTEiJ_G0020384.1 mouse_genomes_project 14 24249040 24264274 - MGP_CASTEiJ_P0038502 Phf7 protein_coding protein_coding MGP_CASTEiJ_T0038333.1 MGP_CASTEiJ_G0020344.1 mouse_genomes_project 14 19368697 19380537 - MGP_CASTEiJ_P0038333 Pde12 protein_coding protein_coding MGP_CASTEiJ_T0039596.1 MGP_CASTEiJ_G0020741.1 mouse_genomes_project 14 56984318 57037878 + MGP_CASTEiJ_P0039596 Nuggc protein_coding protein_coding MGP_CASTEiJ_T0039597.1 MGP_CASTEiJ_G0020741.1 mouse_genomes_project 14 56991749 57037791 + MGP_CASTEiJ_P0039597 Nuggc protein_coding protein_coding MGP_CASTEiJ_T0038097.1 MGP_CASTEiJ_G0020282.1 mouse_genomes_project 14 12090160 12092602 - MGP_CASTEiJ_P0038097 protein_coding protein_coding MGP_CASTEiJ_T0038923.1 MGP_CASTEiJ_G0020528.1 mouse_genomes_project 14 42092511 42100869 + MGP_CASTEiJ_P0038923 Pnp2 protein_coding protein_coding MGP_CASTEiJ_T0039248.1 MGP_CASTEiJ_G0020612.1 mouse_genomes_project 14 46319280 46320619 + MGP_CASTEiJ_P0039248 Fitm1 protein_coding protein_coding MGP_CASTEiJ_T0040151.1 MGP_CASTEiJ_G0020935.1 mouse_genomes_project 14 117701546 117767794 - MGP_CASTEiJ_P0040151 Tmtc4 protein_coding protein_coding MGP_CASTEiJ_T0040152.1 MGP_CASTEiJ_G0020935.1 mouse_genomes_project 14 117701553 117767728 - MGP_CASTEiJ_P0040152 Tmtc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040153.1 MGP_CASTEiJ_G0020935.1 mouse_genomes_project 14 117702307 117767653 - MGP_CASTEiJ_P0040153 Tmtc4 protein_coding protein_coding MGP_CASTEiJ_T0040154.1 MGP_CASTEiJ_G0020935.1 mouse_genomes_project 14 117702338 117767653 - MGP_CASTEiJ_P0040154 Tmtc4 protein_coding protein_coding MGP_CASTEiJ_T0040155.1 MGP_CASTEiJ_G0020935.1 mouse_genomes_project 14 117702484 117718932 - Tmtc4 protein_coding processed_transcript MGP_CASTEiJ_T0040156.1 MGP_CASTEiJ_G0020935.1 mouse_genomes_project 14 117707358 117712007 - Tmtc4 protein_coding retained_intron MGP_CASTEiJ_T0040157.1 MGP_CASTEiJ_G0020935.1 mouse_genomes_project 14 117715384 117767751 - Tmtc4 protein_coding retained_intron MGP_CASTEiJ_T0040158.1 MGP_CASTEiJ_G0020935.1 mouse_genomes_project 14 117727640 117767786 - MGP_CASTEiJ_P0040158 Tmtc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040159.1 MGP_CASTEiJ_G0020935.1 mouse_genomes_project 14 117758128 117767680 - Tmtc4 protein_coding processed_transcript MGP_CASTEiJ_T0038992.1 MGP_CASTEiJ_G0020549.1 mouse_genomes_project 14 43255194 43257110 - MGP_CASTEiJ_P0038992 Olfr221 protein_coding protein_coding MGP_CASTEiJ_T0038644.1 MGP_CASTEiJ_G0020425.1 mouse_genomes_project 14 27233079 27260882 + MGP_CASTEiJ_P0038644 Antxrl protein_coding protein_coding MGP_CASTEiJ_T0039827.1 MGP_CASTEiJ_G0020819.1 mouse_genomes_project 14 65137476 65168919 - MGP_CASTEiJ_P0039827 Gm5519 protein_coding protein_coding MGP_CASTEiJ_T0038936.1 MGP_CASTEiJ_G0020538.1 mouse_genomes_project 14 42301621 42303383 - MGP_CASTEiJ_P0038936 Rnase1 protein_coding protein_coding MGP_CASTEiJ_T0100603.1 MGP_CASTEiJ_G0037516.1 mouse_genomes_project 14 24020693 24020772 - Gm24916 snoRNA snoRNA MGP_CASTEiJ_T0006507.1 MGP_CASTEiJ_G0005394.1 mouse_genomes_project 14 36859534 36885702 + lincRNA lincRNA MGP_CASTEiJ_T0038521.1 MGP_CASTEiJ_G0020391.1 mouse_genomes_project 14 24558995 24624895 - MGP_CASTEiJ_P0038521 Colq protein_coding protein_coding MGP_CASTEiJ_T0038522.1 MGP_CASTEiJ_G0020391.1 mouse_genomes_project 14 24559073 24602539 - MGP_CASTEiJ_P0038522 Colq protein_coding protein_coding MGP_CASTEiJ_T0038524.1 MGP_CASTEiJ_G0020391.1 mouse_genomes_project 14 24596724 24638288 - MGP_CASTEiJ_P0038524 Colq protein_coding protein_coding MGP_CASTEiJ_T0038525.1 MGP_CASTEiJ_G0020391.1 mouse_genomes_project 14 24625896 24638264 - Colq protein_coding processed_transcript MGP_CASTEiJ_T0038526.1 MGP_CASTEiJ_G0020391.1 mouse_genomes_project 14 24633686 24638253 - Colq protein_coding processed_transcript MGP_CASTEiJ_T0038218.1 MGP_CASTEiJ_G0020319.1 mouse_genomes_project 14 14795652 15868558 + MGP_CASTEiJ_P0038218 1700112E06Rik protein_coding protein_coding MGP_CASTEiJ_T0038219.1 MGP_CASTEiJ_G0020319.1 mouse_genomes_project 14 14795761 15652299 + MGP_CASTEiJ_P0038219 1700112E06Rik protein_coding protein_coding MGP_CASTEiJ_T0038220.1 MGP_CASTEiJ_G0020319.1 mouse_genomes_project 14 14795788 15868558 + MGP_CASTEiJ_P0038220 1700112E06Rik protein_coding protein_coding MGP_CASTEiJ_T0038221.1 MGP_CASTEiJ_G0020319.1 mouse_genomes_project 14 14795788 15539534 + MGP_CASTEiJ_P0038221 1700112E06Rik protein_coding protein_coding MGP_CASTEiJ_T0038222.1 MGP_CASTEiJ_G0020319.1 mouse_genomes_project 14 15103552 15391952 + 1700112E06Rik protein_coding processed_transcript MGP_CASTEiJ_T0038223.1 MGP_CASTEiJ_G0020319.1 mouse_genomes_project 14 15385224 15409679 + 1700112E06Rik protein_coding processed_transcript MGP_CASTEiJ_T0039620.1 MGP_CASTEiJ_G0020749.1 mouse_genomes_project 14 57468464 57520793 - MGP_CASTEiJ_P0039620 Adam2 protein_coding protein_coding MGP_CASTEiJ_T0100630.1 MGP_CASTEiJ_G0037543.1 mouse_genomes_project 14 75592073 75592207 + Gm24774 snoRNA snoRNA MGP_CASTEiJ_T0038867.1 MGP_CASTEiJ_G0020495.1 mouse_genomes_project 14 41005400 41014509 - MGP_CASTEiJ_P0038867 Olfr722 protein_coding protein_coding MGP_CASTEiJ_T0002504.1 MGP_CASTEiJ_G0002413.1 mouse_genomes_project 14 44823891 44823955 + TR_J_pseudogene TR_J_pseudogene MGP_CASTEiJ_T0099372.1 MGP_CASTEiJ_G0036285.1 mouse_genomes_project 14 14193943 14194035 + Gm25864 snRNA snRNA MGP_CASTEiJ_T0012656.1 MGP_CASTEiJ_G0010819.1 mouse_genomes_project 14 66392993 66406820 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0038793.1 MGP_CASTEiJ_G0020482.1 mouse_genomes_project 14 38348874 38357686 - MGP_CASTEiJ_P0038793 Dlgap5 protein_coding protein_coding MGP_CASTEiJ_T0038794.1 MGP_CASTEiJ_G0020482.1 mouse_genomes_project 14 38350186 38381452 - MGP_CASTEiJ_P0038794 Dlgap5 protein_coding protein_coding MGP_CASTEiJ_T0038795.1 MGP_CASTEiJ_G0020482.1 mouse_genomes_project 14 38352166 38381469 - Dlgap5 protein_coding retained_intron MGP_CASTEiJ_T0038796.1 MGP_CASTEiJ_G0020482.1 mouse_genomes_project 14 38353285 38381499 - Dlgap5 protein_coding retained_intron MGP_CASTEiJ_T0038797.1 MGP_CASTEiJ_G0020482.1 mouse_genomes_project 14 38357281 38359398 - Dlgap5 protein_coding retained_intron MGP_CASTEiJ_T0038798.1 MGP_CASTEiJ_G0020482.1 mouse_genomes_project 14 38361943 38375017 - MGP_CASTEiJ_P0038798 Dlgap5 protein_coding protein_coding MGP_CASTEiJ_T0038799.1 MGP_CASTEiJ_G0020482.1 mouse_genomes_project 14 38376917 38381492 - Dlgap5 protein_coding retained_intron MGP_CASTEiJ_T0038800.1 MGP_CASTEiJ_G0020482.1 mouse_genomes_project 14 38377448 38379835 - Dlgap5 protein_coding processed_transcript MGP_CASTEiJ_T0101530.1 MGP_CASTEiJ_G0038420.1 mouse_genomes_project 14 39226722 39258001 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101531.1 MGP_CASTEiJ_G0038420.1 mouse_genomes_project 14 39254042 39257794 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0039679.1 MGP_CASTEiJ_G0020765.1 mouse_genomes_project 14 59295110 59299291 + MGP_CASTEiJ_P0039679 Gnrh1 protein_coding protein_coding MGP_CASTEiJ_T0039077.1 MGP_CASTEiJ_G0020565.1 mouse_genomes_project 14 44881201 44901040 - MGP_CASTEiJ_P0039077 Dad1 protein_coding protein_coding MGP_CASTEiJ_T0039078.1 MGP_CASTEiJ_G0020565.1 mouse_genomes_project 14 44885411 44900850 - MGP_CASTEiJ_P0039078 Dad1 protein_coding protein_coding MGP_CASTEiJ_T0012607.1 MGP_CASTEiJ_G0010770.1 mouse_genomes_project 14 11795347 11795755 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040161.1 MGP_CASTEiJ_G0020937.1 mouse_genomes_project 14 118453773 118735673 + MGP_CASTEiJ_P0040161 Itgbl1 protein_coding protein_coding MGP_CASTEiJ_T0040162.1 MGP_CASTEiJ_G0020937.1 mouse_genomes_project 14 118453927 118735112 + MGP_CASTEiJ_P0040162 Itgbl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040163.1 MGP_CASTEiJ_G0020937.1 mouse_genomes_project 14 118455226 118735673 + MGP_CASTEiJ_P0040163 Itgbl1 protein_coding protein_coding MGP_CASTEiJ_T0100596.1 MGP_CASTEiJ_G0037509.1 mouse_genomes_project 14 3692980 3693112 + Gm25466 snoRNA snoRNA MGP_CASTEiJ_T0011040.1 MGP_CASTEiJ_G0009228.1 mouse_genomes_project 14 33686809 33686988 - Gm22726 misc_RNA misc_RNA MGP_CASTEiJ_T0002553.1 MGP_CASTEiJ_G0002454.1 mouse_genomes_project 14 44169220 44169792 + MGP_CASTEiJ_P0002553 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002627.1 MGP_CASTEiJ_G0002517.1 mouse_genomes_project 14 44388907 44389075 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0002458.1 MGP_CASTEiJ_G0002369.1 mouse_genomes_project 14 44832247 44832306 + MGP_CASTEiJ_P0002458 Traj30 TR_J_gene TR_J_gene MGP_CASTEiJ_T0099392.1 MGP_CASTEiJ_G0036305.1 mouse_genomes_project 14 52480075 52480179 - Gm25716 snRNA snRNA MGP_CASTEiJ_T0099414.1 MGP_CASTEiJ_G0036327.1 mouse_genomes_project 14 106216747 106216839 - Gm22764 snRNA snRNA MGP_CASTEiJ_T0040067.1 MGP_CASTEiJ_G0020904.1 mouse_genomes_project 14 111343773 112455434 + MGP_CASTEiJ_P0040067 Gpc6 protein_coding protein_coding MGP_CASTEiJ_T0040068.1 MGP_CASTEiJ_G0020904.1 mouse_genomes_project 14 111343791 112083756 + Gpc6 protein_coding retained_intron MGP_CASTEiJ_T0040069.1 MGP_CASTEiJ_G0020904.1 mouse_genomes_project 14 111343906 112452599 + MGP_CASTEiJ_P0040069 Gpc6 protein_coding protein_coding MGP_CASTEiJ_T0040070.1 MGP_CASTEiJ_G0020904.1 mouse_genomes_project 14 111344007 112451453 + MGP_CASTEiJ_P0040070 Gpc6 protein_coding protein_coding MGP_CASTEiJ_T0002625.1 MGP_CASTEiJ_G0002515.1 mouse_genomes_project 14 44276024 44276491 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0102076.1 MGP_CASTEiJ_G0038801.1 mouse_genomes_project 14 18822021 18831820 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100622.1 MGP_CASTEiJ_G0037535.1 mouse_genomes_project 14 56121465 56121601 + Gm26225 snoRNA snoRNA MGP_CASTEiJ_T0000880.1 MGP_CASTEiJ_G0000819.1 mouse_genomes_project 14 58422492 58423871 + TEC TEC MGP_CASTEiJ_T0012650.1 MGP_CASTEiJ_G0010813.1 mouse_genomes_project 14 54717718 54718716 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002444.1 MGP_CASTEiJ_G0002355.1 mouse_genomes_project 14 44814386 44814449 + MGP_CASTEiJ_P0002444 Traj45 TR_J_gene TR_J_gene MGP_CASTEiJ_T0039440.1 MGP_CASTEiJ_G0020680.1 mouse_genomes_project 14 50214788 50237259 + MGP_CASTEiJ_P0039440 Rcbtb1 protein_coding protein_coding MGP_CASTEiJ_T0039441.1 MGP_CASTEiJ_G0020680.1 mouse_genomes_project 14 50214807 50253203 + MGP_CASTEiJ_P0039441 Rcbtb1 protein_coding protein_coding MGP_CASTEiJ_T0039442.1 MGP_CASTEiJ_G0020680.1 mouse_genomes_project 14 50214813 50251494 + MGP_CASTEiJ_P0039442 Rcbtb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039443.1 MGP_CASTEiJ_G0020680.1 mouse_genomes_project 14 50214821 50253203 + MGP_CASTEiJ_P0039443 Rcbtb1 protein_coding protein_coding MGP_CASTEiJ_T0039444.1 MGP_CASTEiJ_G0020680.1 mouse_genomes_project 14 50215055 50223569 + MGP_CASTEiJ_P0039444 Rcbtb1 protein_coding protein_coding MGP_CASTEiJ_T0039445.1 MGP_CASTEiJ_G0020680.1 mouse_genomes_project 14 50215062 50236571 + Rcbtb1 protein_coding processed_transcript MGP_CASTEiJ_T0039446.1 MGP_CASTEiJ_G0020680.1 mouse_genomes_project 14 50215082 50223665 + MGP_CASTEiJ_P0039446 Rcbtb1 protein_coding protein_coding MGP_CASTEiJ_T0039447.1 MGP_CASTEiJ_G0020680.1 mouse_genomes_project 14 50219186 50244109 + MGP_CASTEiJ_P0039447 Rcbtb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039448.1 MGP_CASTEiJ_G0020680.1 mouse_genomes_project 14 50230518 50238778 + Rcbtb1 protein_coding processed_transcript MGP_CASTEiJ_T0039449.1 MGP_CASTEiJ_G0020680.1 mouse_genomes_project 14 50231646 50253197 + MGP_CASTEiJ_P0039449 Rcbtb1 protein_coding protein_coding MGP_CASTEiJ_T0039450.1 MGP_CASTEiJ_G0020680.1 mouse_genomes_project 14 50236632 50238739 + Rcbtb1 protein_coding retained_intron MGP_CASTEiJ_T0039563.1 MGP_CASTEiJ_G0020726.1 mouse_genomes_project 14 55282218 55349694 - MGP_CASTEiJ_P0039563 4930578I06Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0039564.1 MGP_CASTEiJ_G0020726.1 mouse_genomes_project 14 55283987 55300652 - MGP_CASTEiJ_P0039564 4930578I06Rik protein_coding protein_coding MGP_CASTEiJ_T0038272.1 MGP_CASTEiJ_G0020328.1 mouse_genomes_project 14 18756953 18832564 + MGP_CASTEiJ_P0038272 Anxa11 protein_coding protein_coding MGP_CASTEiJ_T0038273.1 MGP_CASTEiJ_G0020328.1 mouse_genomes_project 14 18756980 18824439 + Anxa11 protein_coding retained_intron MGP_CASTEiJ_T0038274.1 MGP_CASTEiJ_G0020328.1 mouse_genomes_project 14 18756980 18832564 + Anxa11 protein_coding retained_intron MGP_CASTEiJ_T0038275.1 MGP_CASTEiJ_G0020328.1 mouse_genomes_project 14 18756980 18824827 + MGP_CASTEiJ_P0038275 Anxa11 protein_coding protein_coding MGP_CASTEiJ_T0009739.1 MGP_CASTEiJ_G0007927.1 mouse_genomes_project 14 59417870 59417980 - Mir6539 miRNA miRNA MGP_CASTEiJ_T0006516.1 MGP_CASTEiJ_G0005400.1 mouse_genomes_project 14 41203906 41205706 + Gm45057 lincRNA lincRNA MGP_CASTEiJ_T0038859.1 MGP_CASTEiJ_G0020493.1 mouse_genomes_project 14 40381043 40625164 - MGP_CASTEiJ_P0038859 Slc35f4 protein_coding protein_coding MGP_CASTEiJ_T0038860.1 MGP_CASTEiJ_G0020493.1 mouse_genomes_project 14 40381043 40625143 - MGP_CASTEiJ_P0038860 Slc35f4 protein_coding protein_coding MGP_CASTEiJ_T0038861.1 MGP_CASTEiJ_G0020493.1 mouse_genomes_project 14 40385830 40396681 - Slc35f4 protein_coding processed_transcript MGP_CASTEiJ_T0038862.1 MGP_CASTEiJ_G0020493.1 mouse_genomes_project 14 40394560 40625324 - MGP_CASTEiJ_P0038862 Slc35f4 protein_coding protein_coding MGP_CASTEiJ_T0038863.1 MGP_CASTEiJ_G0020493.1 mouse_genomes_project 14 40399499 40625131 - Slc35f4 protein_coding retained_intron MGP_CASTEiJ_T0039690.1 MGP_CASTEiJ_G0020772.1 mouse_genomes_project 14 60636550 60648649 + MGP_CASTEiJ_P0039690 Stc1 protein_coding protein_coding MGP_CASTEiJ_T0003416.1 MGP_CASTEiJ_G0003114.1 mouse_genomes_project 14 18771445 18785002 - Anxa11os antisense antisense MGP_CASTEiJ_T0002540.1 MGP_CASTEiJ_G0002443.1 mouse_genomes_project 14 44110586 44111146 + MGP_CASTEiJ_P0002540 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039040.1 MGP_CASTEiJ_G0020556.1 mouse_genomes_project 14 43527491 43537918 - MGP_CASTEiJ_P0039040 Mettl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039041.1 MGP_CASTEiJ_G0020556.1 mouse_genomes_project 14 43527664 43537963 - MGP_CASTEiJ_P0039041 Mettl3 protein_coding protein_coding MGP_CASTEiJ_T0039042.1 MGP_CASTEiJ_G0020556.1 mouse_genomes_project 14 43527672 43533170 - MGP_CASTEiJ_P0039042 Mettl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039043.1 MGP_CASTEiJ_G0020556.1 mouse_genomes_project 14 43527680 43529487 - Mettl3 protein_coding retained_intron MGP_CASTEiJ_T0039044.1 MGP_CASTEiJ_G0020556.1 mouse_genomes_project 14 43527680 43529569 - MGP_CASTEiJ_P0039044 Mettl3 protein_coding protein_coding MGP_CASTEiJ_T0039045.1 MGP_CASTEiJ_G0020556.1 mouse_genomes_project 14 43527680 43529570 - MGP_CASTEiJ_P0039045 Mettl3 protein_coding protein_coding MGP_CASTEiJ_T0039046.1 MGP_CASTEiJ_G0020556.1 mouse_genomes_project 14 43528326 43537959 - MGP_CASTEiJ_P0039046 Mettl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039047.1 MGP_CASTEiJ_G0020556.1 mouse_genomes_project 14 43528526 43529580 - Mettl3 protein_coding retained_intron MGP_CASTEiJ_T0039048.1 MGP_CASTEiJ_G0020556.1 mouse_genomes_project 14 43529478 43531281 - Mettl3 protein_coding retained_intron MGP_CASTEiJ_T0039049.1 MGP_CASTEiJ_G0020556.1 mouse_genomes_project 14 43529807 43532598 - Mettl3 protein_coding retained_intron MGP_CASTEiJ_T0039050.1 MGP_CASTEiJ_G0020556.1 mouse_genomes_project 14 43530026 43537921 - MGP_CASTEiJ_P0039050 Mettl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039051.1 MGP_CASTEiJ_G0020556.1 mouse_genomes_project 14 43530294 43537822 - MGP_CASTEiJ_P0039051 Mettl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039052.1 MGP_CASTEiJ_G0020556.1 mouse_genomes_project 14 43530849 43537822 - MGP_CASTEiJ_P0039052 Mettl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039053.1 MGP_CASTEiJ_G0020556.1 mouse_genomes_project 14 43530859 43537942 - MGP_CASTEiJ_P0039053 Mettl3 protein_coding protein_coding MGP_CASTEiJ_T0039054.1 MGP_CASTEiJ_G0020556.1 mouse_genomes_project 14 43533177 43537934 - MGP_CASTEiJ_P0039054 Mettl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039055.1 MGP_CASTEiJ_G0020556.1 mouse_genomes_project 14 43536456 43537959 - Mettl3 protein_coding retained_intron MGP_CASTEiJ_T0039191.1 MGP_CASTEiJ_G0020599.1 mouse_genomes_project 14 45717369 45726895 + MGP_CASTEiJ_P0039191 Ngdn protein_coding protein_coding MGP_CASTEiJ_T0009742.1 MGP_CASTEiJ_G0007930.1 mouse_genomes_project 14 64795573 64795662 - Mir687 miRNA miRNA MGP_CASTEiJ_T0038801.1 MGP_CASTEiJ_G0020483.1 mouse_genomes_project 14 38499393 38506446 + MGP_CASTEiJ_P0038801 protein_coding protein_coding MGP_CASTEiJ_T0039718.1 MGP_CASTEiJ_G0020785.1 mouse_genomes_project 14 61206044 61231954 - MGP_CASTEiJ_P0039718 Rhobtb2 protein_coding protein_coding MGP_CASTEiJ_T0038202.1 MGP_CASTEiJ_G0020315.1 mouse_genomes_project 14 14507466 14551928 + MGP_CASTEiJ_P0038202 Samd8 protein_coding protein_coding MGP_CASTEiJ_T0038203.1 MGP_CASTEiJ_G0020315.1 mouse_genomes_project 14 14507483 14551928 + MGP_CASTEiJ_P0038203 Samd8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038204.1 MGP_CASTEiJ_G0020315.1 mouse_genomes_project 14 14507500 14551867 + MGP_CASTEiJ_P0038204 Samd8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038205.1 MGP_CASTEiJ_G0020315.1 mouse_genomes_project 14 14508487 14557358 + MGP_CASTEiJ_P0038205 Samd8 protein_coding protein_coding MGP_CASTEiJ_T0038206.1 MGP_CASTEiJ_G0020315.1 mouse_genomes_project 14 14550497 14551601 + Samd8 protein_coding retained_intron MGP_CASTEiJ_T0002432.1 MGP_CASTEiJ_G0002346.1 mouse_genomes_project 14 44800092 44800157 + Traj57 TR_J_gene processed_transcript MGP_CASTEiJ_T0002433.1 MGP_CASTEiJ_G0002346.1 mouse_genomes_project 14 44800094 44800157 + MGP_CASTEiJ_P0002433 Traj57 TR_J_gene TR_J_gene MGP_CASTEiJ_T0012628.1 MGP_CASTEiJ_G0010791.1 mouse_genomes_project 14 41759416 41759700 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009741.1 MGP_CASTEiJ_G0007929.1 mouse_genomes_project 14 61931189 61931271 + Mir320 miRNA miRNA MGP_CASTEiJ_T0006538.1 MGP_CASTEiJ_G0005418.1 mouse_genomes_project 14 55940325 55941107 + Mir124a-1hg lincRNA lincRNA MGP_CASTEiJ_T0006539.1 MGP_CASTEiJ_G0005418.1 mouse_genomes_project 14 55941045 55946967 + Mir124a-1hg lincRNA lincRNA MGP_CASTEiJ_T0006540.1 MGP_CASTEiJ_G0005418.1 mouse_genomes_project 14 55941533 55943470 + Mir124a-1hg lincRNA lincRNA MGP_CASTEiJ_T0006541.1 MGP_CASTEiJ_G0005418.1 mouse_genomes_project 14 55942689 55943685 + Mir124a-1hg lincRNA lincRNA MGP_CASTEiJ_T0039505.1 MGP_CASTEiJ_G0020701.1 mouse_genomes_project 14 52746540 52756001 + MGP_CASTEiJ_P0039505 Trim13 protein_coding protein_coding MGP_CASTEiJ_T0038733.1 MGP_CASTEiJ_G0020463.1 mouse_genomes_project 14 36084526 36088723 + Gpr137c protein_coding processed_transcript MGP_CASTEiJ_T0038734.1 MGP_CASTEiJ_G0020463.1 mouse_genomes_project 14 36084800 36146835 + MGP_CASTEiJ_P0038734 Gpr137c protein_coding protein_coding MGP_CASTEiJ_T0038735.1 MGP_CASTEiJ_G0020463.1 mouse_genomes_project 14 36131290 36144862 + Gpr137c protein_coding retained_intron MGP_CASTEiJ_T0038120.1 MGP_CASTEiJ_G0020295.1 mouse_genomes_project 14 13069747 13124679 - MGP_CASTEiJ_P0038120 Cfap70 protein_coding protein_coding MGP_CASTEiJ_T0038121.1 MGP_CASTEiJ_G0020295.1 mouse_genomes_project 14 13069747 13124679 - MGP_CASTEiJ_P0038121 Cfap70 protein_coding protein_coding MGP_CASTEiJ_T0038122.1 MGP_CASTEiJ_G0020295.1 mouse_genomes_project 14 13069747 13124679 - MGP_CASTEiJ_P0038122 Cfap70 protein_coding protein_coding MGP_CASTEiJ_T0038123.1 MGP_CASTEiJ_G0020295.1 mouse_genomes_project 14 13069750 13124676 - MGP_CASTEiJ_P0038123 Cfap70 protein_coding protein_coding MGP_CASTEiJ_T0038124.1 MGP_CASTEiJ_G0020295.1 mouse_genomes_project 14 13069753 13120394 - MGP_CASTEiJ_P0038124 Cfap70 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038125.1 MGP_CASTEiJ_G0020295.1 mouse_genomes_project 14 13098962 13124680 - Cfap70 protein_coding retained_intron MGP_CASTEiJ_T0038126.1 MGP_CASTEiJ_G0020295.1 mouse_genomes_project 14 13099463 13103424 - Cfap70 protein_coding processed_transcript MGP_CASTEiJ_T0038127.1 MGP_CASTEiJ_G0020295.1 mouse_genomes_project 14 13111393 13124677 - MGP_CASTEiJ_P0038127 Cfap70 protein_coding protein_coding MGP_CASTEiJ_T0038128.1 MGP_CASTEiJ_G0020295.1 mouse_genomes_project 14 13119164 13120478 - Cfap70 protein_coding retained_intron MGP_CASTEiJ_T0039120.1 MGP_CASTEiJ_G0020575.1 mouse_genomes_project 14 45207063 45219549 - MGP_CASTEiJ_P0039120 Haus4 protein_coding protein_coding MGP_CASTEiJ_T0099398.1 MGP_CASTEiJ_G0036311.1 mouse_genomes_project 14 78734608 78734698 - Gm23926 snRNA snRNA MGP_CASTEiJ_T0038594.1 MGP_CASTEiJ_G0020404.1 mouse_genomes_project 14 25463978 25477502 - MGP_CASTEiJ_P0038594 1700024G13Rik protein_coding protein_coding MGP_CASTEiJ_T0009738.1 MGP_CASTEiJ_G0007926.1 mouse_genomes_project 14 58791865 58791964 - Gm23178 miRNA miRNA MGP_CASTEiJ_T0012616.1 MGP_CASTEiJ_G0010779.1 mouse_genomes_project 14 23774769 23775559 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0038639.1 MGP_CASTEiJ_G0020420.1 mouse_genomes_project 14 27116976 27123995 + MGP_CASTEiJ_P0038639 Gdf2 protein_coding protein_coding MGP_CASTEiJ_T0002620.1 MGP_CASTEiJ_G0002510.1 mouse_genomes_project 14 44121605 44122158 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0039388.1 MGP_CASTEiJ_G0020663.1 mouse_genomes_project 14 48003745 48009810 - MGP_CASTEiJ_P0039388 Gjb2 protein_coding protein_coding MGP_CASTEiJ_T0040106.1 MGP_CASTEiJ_G0020917.1 mouse_genomes_project 14 115102652 115128692 + MGP_CASTEiJ_P0040106 Rap2a protein_coding protein_coding MGP_CASTEiJ_T0040107.1 MGP_CASTEiJ_G0020917.1 mouse_genomes_project 14 115125115 115128692 + MGP_CASTEiJ_P0040107 Rap2a protein_coding protein_coding MGP_CASTEiJ_T0038667.1 MGP_CASTEiJ_G0020437.1 mouse_genomes_project 14 27729602 27804980 - MGP_CASTEiJ_P0038667 Ldb3 protein_coding protein_coding MGP_CASTEiJ_T0038668.1 MGP_CASTEiJ_G0020437.1 mouse_genomes_project 14 27729602 27804906 - MGP_CASTEiJ_P0038668 Ldb3 protein_coding protein_coding MGP_CASTEiJ_T0038669.1 MGP_CASTEiJ_G0020437.1 mouse_genomes_project 14 27729602 27804980 - MGP_CASTEiJ_P0038669 Ldb3 protein_coding protein_coding MGP_CASTEiJ_T0038670.1 MGP_CASTEiJ_G0020437.1 mouse_genomes_project 14 27729602 27804980 - MGP_CASTEiJ_P0038670 Ldb3 protein_coding protein_coding MGP_CASTEiJ_T0038671.1 MGP_CASTEiJ_G0020437.1 mouse_genomes_project 14 27767593 27804980 - MGP_CASTEiJ_P0038671 Ldb3 protein_coding protein_coding MGP_CASTEiJ_T0039757.1 MGP_CASTEiJ_G0020797.1 mouse_genomes_project 14 61947417 61958749 + MGP_CASTEiJ_P0039757 Phyhip protein_coding protein_coding MGP_CASTEiJ_T0039758.1 MGP_CASTEiJ_G0020797.1 mouse_genomes_project 14 61948463 61953253 + MGP_CASTEiJ_P0039758 Phyhip protein_coding protein_coding MGP_CASTEiJ_T0003452.1 MGP_CASTEiJ_G0003144.1 mouse_genomes_project 14 55437570 55441007 - Gm17116 antisense antisense MGP_CASTEiJ_T0039649.1 MGP_CASTEiJ_G0020756.1 mouse_genomes_project 14 58246294 58259446 + MGP_CASTEiJ_P0039649 Gm10032 protein_coding protein_coding MGP_CASTEiJ_T0039768.1 MGP_CASTEiJ_G0020804.1 mouse_genomes_project 14 62078132 62094904 - MGP_CASTEiJ_P0039768 Fam160b2 protein_coding protein_coding MGP_CASTEiJ_T0009723.1 MGP_CASTEiJ_G0007911.1 mouse_genomes_project 14 45285543 45285652 - Mir686 miRNA miRNA MGP_CASTEiJ_T0039323.1 MGP_CASTEiJ_G0020625.1 mouse_genomes_project 14 46429260 46431998 - MGP_CASTEiJ_P0039323 Tinf2 protein_coding protein_coding MGP_CASTEiJ_T0006487.1 MGP_CASTEiJ_G0005381.1 mouse_genomes_project 14 17538074 17538797 + 4930428N03Rik lincRNA lincRNA MGP_CASTEiJ_T0006488.1 MGP_CASTEiJ_G0005381.1 mouse_genomes_project 14 17538095 17549508 + 4930428N03Rik lincRNA lincRNA MGP_CASTEiJ_T0002586.1 MGP_CASTEiJ_G0002482.1 mouse_genomes_project 14 44594638 44595290 + MGP_CASTEiJ_P0002586 Trdv2-2 TR_V_gene TR_V_gene MGP_CASTEiJ_T0038503.1 MGP_CASTEiJ_G0020385.1 mouse_genomes_project 14 24264477 24273837 + MGP_CASTEiJ_P0038503 Bap1 protein_coding protein_coding MGP_CASTEiJ_T0038504.1 MGP_CASTEiJ_G0020385.1 mouse_genomes_project 14 24264530 24266034 + Bap1 protein_coding retained_intron MGP_CASTEiJ_T0038505.1 MGP_CASTEiJ_G0020385.1 mouse_genomes_project 14 24264538 24267221 + Bap1 protein_coding retained_intron MGP_CASTEiJ_T0038506.1 MGP_CASTEiJ_G0020385.1 mouse_genomes_project 14 24264565 24273823 + Bap1 protein_coding retained_intron MGP_CASTEiJ_T0038507.1 MGP_CASTEiJ_G0020385.1 mouse_genomes_project 14 24264607 24268156 + MGP_CASTEiJ_P0038507 Bap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038508.1 MGP_CASTEiJ_G0020385.1 mouse_genomes_project 14 24270161 24272417 + MGP_CASTEiJ_P0038508 Bap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038509.1 MGP_CASTEiJ_G0020385.1 mouse_genomes_project 14 24270431 24271534 + Bap1 protein_coding retained_intron MGP_CASTEiJ_T0038510.1 MGP_CASTEiJ_G0020385.1 mouse_genomes_project 14 24271383 24272781 + Bap1 protein_coding retained_intron MGP_CASTEiJ_T0002419.1 MGP_CASTEiJ_G0002335.1 mouse_genomes_project 14 44759520 44759531 + Trdd1 TR_D_gene processed_transcript MGP_CASTEiJ_T0002420.1 MGP_CASTEiJ_G0002335.1 mouse_genomes_project 14 44759520 44759529 + MGP_CASTEiJ_P0002420 Trdd1 TR_D_gene TR_D_gene MGP_CASTEiJ_T0038015.1 MGP_CASTEiJ_G0020257.1 mouse_genomes_project 14 4796074 5263236 - MGP_CASTEiJ_P0038015 Cadps protein_coding unknown_likely_coding MGP_CASTEiJ_T0038016.1 MGP_CASTEiJ_G0020257.1 mouse_genomes_project 14 4796076 5263577 - MGP_CASTEiJ_P0038016 Cadps protein_coding protein_coding MGP_CASTEiJ_T0038017.1 MGP_CASTEiJ_G0020257.1 mouse_genomes_project 14 4796078 5263577 - MGP_CASTEiJ_P0038017 Cadps protein_coding protein_coding MGP_CASTEiJ_T0038018.1 MGP_CASTEiJ_G0020257.1 mouse_genomes_project 14 4796078 5263577 - MGP_CASTEiJ_P0038018 Cadps protein_coding protein_coding MGP_CASTEiJ_T0038019.1 MGP_CASTEiJ_G0020257.1 mouse_genomes_project 14 4796078 5263577 - MGP_CASTEiJ_P0038019 Cadps protein_coding protein_coding MGP_CASTEiJ_T0038012.1 MGP_CASTEiJ_G0020255.1 mouse_genomes_project 14 4699774 4722027 + MGP_CASTEiJ_P0038012 3830406C13Rik protein_coding protein_coding MGP_CASTEiJ_T0038013.1 MGP_CASTEiJ_G0020255.1 mouse_genomes_project 14 4699774 4722027 + MGP_CASTEiJ_P0038013 3830406C13Rik protein_coding protein_coding MGP_CASTEiJ_T0039723.1 MGP_CASTEiJ_G0020790.1 mouse_genomes_project 14 61614279 61619381 - MGP_CASTEiJ_P0039723 9930012K11Rik protein_coding protein_coding MGP_CASTEiJ_T0039724.1 MGP_CASTEiJ_G0020790.1 mouse_genomes_project 14 61614279 61619381 - MGP_CASTEiJ_P0039724 9930012K11Rik protein_coding protein_coding MGP_CASTEiJ_T0039725.1 MGP_CASTEiJ_G0020790.1 mouse_genomes_project 14 61614282 61616791 - 9930012K11Rik protein_coding retained_intron MGP_CASTEiJ_T0039726.1 MGP_CASTEiJ_G0020790.1 mouse_genomes_project 14 61614772 61616340 - MGP_CASTEiJ_P0039726 9930012K11Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039727.1 MGP_CASTEiJ_G0020790.1 mouse_genomes_project 14 61614905 61616683 - 9930012K11Rik protein_coding retained_intron MGP_CASTEiJ_T0012630.1 MGP_CASTEiJ_G0010793.1 mouse_genomes_project 14 43726397 43726573 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0038147.1 MGP_CASTEiJ_G0020301.1 mouse_genomes_project 14 13345220 13354605 - MGP_CASTEiJ_P0038147 Synpo2l protein_coding protein_coding MGP_CASTEiJ_T0038148.1 MGP_CASTEiJ_G0020301.1 mouse_genomes_project 14 13345222 13350872 - MGP_CASTEiJ_P0038148 Synpo2l protein_coding protein_coding MGP_CASTEiJ_T0038149.1 MGP_CASTEiJ_G0020301.1 mouse_genomes_project 14 13345692 13354652 - MGP_CASTEiJ_P0038149 Synpo2l protein_coding protein_coding MGP_CASTEiJ_T0099370.1 MGP_CASTEiJ_G0036283.1 mouse_genomes_project 14 11010327 11010483 + Gm22350 snRNA snRNA MGP_CASTEiJ_T0038592.1 MGP_CASTEiJ_G0020403.1 mouse_genomes_project 14 25411595 25437128 + MGP_CASTEiJ_P0038592 Ogdhl protein_coding unknown_likely_coding MGP_CASTEiJ_T0038593.1 MGP_CASTEiJ_G0020403.1 mouse_genomes_project 14 25411607 25436814 + MGP_CASTEiJ_P0038593 Ogdhl protein_coding protein_coding MGP_CASTEiJ_T0038736.1 MGP_CASTEiJ_G0020464.1 mouse_genomes_project 14 36148692 36191686 - MGP_CASTEiJ_P0038736 Ero1l protein_coding protein_coding MGP_CASTEiJ_T0038034.1 MGP_CASTEiJ_G0020264.1 mouse_genomes_project 14 6728169 6729192 - MGP_CASTEiJ_P0038034 Olfr720 protein_coding protein_coding MGP_CASTEiJ_T0038035.1 MGP_CASTEiJ_G0020264.1 mouse_genomes_project 14 6728771 6741375 - MGP_CASTEiJ_P0038035 Olfr720 protein_coding protein_coding MGP_CASTEiJ_T0006520.1 MGP_CASTEiJ_G0005403.1 mouse_genomes_project 14 42592951 42598263 + Gm21718 lincRNA lincRNA MGP_CASTEiJ_T0039338.1 MGP_CASTEiJ_G0020632.1 mouse_genomes_project 14 46519258 46521743 + MGP_CASTEiJ_P0039338 Ltb4r1 protein_coding protein_coding MGP_CASTEiJ_T0002631.1 MGP_CASTEiJ_G0002521.1 mouse_genomes_project 14 44638941 44639249 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0016687.1 MGP_CASTEiJ_G0014600.1 mouse_genomes_project 14 117261186 117264950 - 2610035F20Rik processed_transcript retained_intron MGP_CASTEiJ_T0016688.1 MGP_CASTEiJ_G0014600.1 mouse_genomes_project 14 117261279 117266583 - 2610035F20Rik processed_transcript processed_transcript MGP_CASTEiJ_T0003445.1 MGP_CASTEiJ_G0003139.1 mouse_genomes_project 14 51900908 51909953 - Mipepos antisense antisense MGP_CASTEiJ_T0040133.1 MGP_CASTEiJ_G0020933.1 mouse_genomes_project 14 117319549 117371075 + Pcca protein_coding retained_intron MGP_CASTEiJ_T0040134.1 MGP_CASTEiJ_G0020933.1 mouse_genomes_project 14 117319556 117404928 + MGP_CASTEiJ_P0040134 Pcca protein_coding protein_coding MGP_CASTEiJ_T0040135.1 MGP_CASTEiJ_G0020933.1 mouse_genomes_project 14 117319564 117672548 + MGP_CASTEiJ_P0040135 Pcca protein_coding protein_coding MGP_CASTEiJ_T0040136.1 MGP_CASTEiJ_G0020933.1 mouse_genomes_project 14 117319570 117435774 + MGP_CASTEiJ_P0040136 Pcca protein_coding protein_coding MGP_CASTEiJ_T0040137.1 MGP_CASTEiJ_G0020933.1 mouse_genomes_project 14 117370781 117672432 + MGP_CASTEiJ_P0040137 Pcca protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040138.1 MGP_CASTEiJ_G0020933.1 mouse_genomes_project 14 117391271 117450473 + Pcca protein_coding processed_transcript MGP_CASTEiJ_T0040139.1 MGP_CASTEiJ_G0020933.1 mouse_genomes_project 14 117504334 117527671 + MGP_CASTEiJ_P0040139 Pcca protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040140.1 MGP_CASTEiJ_G0020933.1 mouse_genomes_project 14 117504360 117672429 + MGP_CASTEiJ_P0040140 Pcca protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040141.1 MGP_CASTEiJ_G0020933.1 mouse_genomes_project 14 117504424 117592281 + Pcca protein_coding processed_transcript MGP_CASTEiJ_T0040142.1 MGP_CASTEiJ_G0020933.1 mouse_genomes_project 14 117527575 117592627 + Pcca protein_coding retained_intron MGP_CASTEiJ_T0040143.1 MGP_CASTEiJ_G0020933.1 mouse_genomes_project 14 117567087 117672424 + MGP_CASTEiJ_P0040143 Pcca protein_coding protein_coding MGP_CASTEiJ_T0040145.1 MGP_CASTEiJ_G0020933.1 mouse_genomes_project 14 117658539 117673704 + Pcca protein_coding processed_transcript MGP_CASTEiJ_T0040146.1 MGP_CASTEiJ_G0020933.1 mouse_genomes_project 14 117669506 117672432 + Pcca protein_coding retained_intron MGP_CASTEiJ_T0039189.1 MGP_CASTEiJ_G0020598.1 mouse_genomes_project 14 45676410 45676501 + MGP_CASTEiJ_P0039189 Gm17428 protein_coding protein_coding MGP_CASTEiJ_T0038647.1 MGP_CASTEiJ_G0020427.1 mouse_genomes_project 14 27327421 27335864 - MGP_CASTEiJ_P0038647 Npy4r protein_coding protein_coding MGP_CASTEiJ_T0012667.1 MGP_CASTEiJ_G0010830.1 mouse_genomes_project 14 92432420 92432853 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039652.1 MGP_CASTEiJ_G0020759.1 mouse_genomes_project 14 58392078 58402048 + MGP_CASTEiJ_P0039652 Pnma2 protein_coding protein_coding MGP_CASTEiJ_T0039653.1 MGP_CASTEiJ_G0020759.1 mouse_genomes_project 14 58392116 58400811 + MGP_CASTEiJ_P0039653 Pnma2 protein_coding protein_coding MGP_CASTEiJ_T0039654.1 MGP_CASTEiJ_G0020759.1 mouse_genomes_project 14 58392150 58396732 + Pnma2 protein_coding processed_transcript MGP_CASTEiJ_T0039655.1 MGP_CASTEiJ_G0020759.1 mouse_genomes_project 14 58396321 58398032 + Pnma2 protein_coding processed_transcript MGP_CASTEiJ_T0006526.1 MGP_CASTEiJ_G0005408.1 mouse_genomes_project 14 47550371 47553440 - Gm16973 lincRNA lincRNA MGP_CASTEiJ_T0006527.1 MGP_CASTEiJ_G0005408.1 mouse_genomes_project 14 47551459 47555343 - Gm16973 lincRNA lincRNA MGP_CASTEiJ_T0039738.1 MGP_CASTEiJ_G0020792.1 mouse_genomes_project 14 61640559 61671193 - MGP_CASTEiJ_P0039738 Sorbs3 protein_coding protein_coding MGP_CASTEiJ_T0039739.1 MGP_CASTEiJ_G0020792.1 mouse_genomes_project 14 61641261 61669642 - MGP_CASTEiJ_P0039739 Sorbs3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038519.1 MGP_CASTEiJ_G0020389.1 mouse_genomes_project 14 24512528 24528609 - MGP_CASTEiJ_P0038519 Mettl6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039673.1 MGP_CASTEiJ_G0020764.1 mouse_genomes_project 14 59265793 59289378 + MGP_CASTEiJ_P0039673 Kctd9 protein_coding protein_coding MGP_CASTEiJ_T0039674.1 MGP_CASTEiJ_G0020764.1 mouse_genomes_project 14 59265954 59292222 + MGP_CASTEiJ_P0039674 Kctd9 protein_coding protein_coding MGP_CASTEiJ_T0039675.1 MGP_CASTEiJ_G0020764.1 mouse_genomes_project 14 59265996 59279403 + MGP_CASTEiJ_P0039675 Kctd9 protein_coding protein_coding MGP_CASTEiJ_T0039676.1 MGP_CASTEiJ_G0020764.1 mouse_genomes_project 14 59266141 59292073 + MGP_CASTEiJ_P0039676 Kctd9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039677.1 MGP_CASTEiJ_G0020764.1 mouse_genomes_project 14 59266154 59290439 + MGP_CASTEiJ_P0039677 Kctd9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039678.1 MGP_CASTEiJ_G0020764.1 mouse_genomes_project 14 59266193 59290325 + MGP_CASTEiJ_P0039678 Kctd9 protein_coding protein_coding MGP_CASTEiJ_T0006499.1 MGP_CASTEiJ_G0005387.1 mouse_genomes_project 14 21340456 21343789 - Gm2670 lincRNA lincRNA MGP_CASTEiJ_T0009747.1 MGP_CASTEiJ_G0007935.1 mouse_genomes_project 14 93924781 93926102 + miRNA miRNA MGP_CASTEiJ_T0002437.1 MGP_CASTEiJ_G0002350.1 mouse_genomes_project 14 44809142 44809205 + MGP_CASTEiJ_P0002437 Traj50 TR_J_gene TR_J_gene MGP_CASTEiJ_T0038026.1 MGP_CASTEiJ_G0020260.1 mouse_genomes_project 14 6353627 6465541 - MGP_CASTEiJ_P0038026 Gm281 protein_coding protein_coding MGP_CASTEiJ_T0038432.1 MGP_CASTEiJ_G0020374.1 mouse_genomes_project 14 24001762 24004647 - MGP_CASTEiJ_P0038432 Spcs1 protein_coding protein_coding MGP_CASTEiJ_T0038433.1 MGP_CASTEiJ_G0020374.1 mouse_genomes_project 14 24001762 24004585 - MGP_CASTEiJ_P0038433 Spcs1 protein_coding protein_coding MGP_CASTEiJ_T0038434.1 MGP_CASTEiJ_G0020374.1 mouse_genomes_project 14 24001763 24004339 - MGP_CASTEiJ_P0038434 Spcs1 protein_coding protein_coding MGP_CASTEiJ_T0038435.1 MGP_CASTEiJ_G0020374.1 mouse_genomes_project 14 24001763 24004641 - MGP_CASTEiJ_P0038435 Spcs1 protein_coding protein_coding MGP_CASTEiJ_T0038436.1 MGP_CASTEiJ_G0020374.1 mouse_genomes_project 14 24001764 24004345 - Spcs1 protein_coding retained_intron MGP_CASTEiJ_T0038437.1 MGP_CASTEiJ_G0020374.1 mouse_genomes_project 14 24003192 24004326 - Spcs1 protein_coding retained_intron MGP_CASTEiJ_T0038438.1 MGP_CASTEiJ_G0020374.1 mouse_genomes_project 14 24003371 24004343 - MGP_CASTEiJ_P0038438 Spcs1 protein_coding protein_coding MGP_CASTEiJ_T0040103.1 MGP_CASTEiJ_G0020916.1 mouse_genomes_project 14 114885300 115048364 + MGP_CASTEiJ_P0040103 Mbnl2 protein_coding protein_coding MGP_CASTEiJ_T0040104.1 MGP_CASTEiJ_G0020916.1 mouse_genomes_project 14 114885300 115048364 + MGP_CASTEiJ_P0040104 Mbnl2 protein_coding protein_coding MGP_CASTEiJ_T0040105.1 MGP_CASTEiJ_G0020916.1 mouse_genomes_project 14 114937278 115045889 + MGP_CASTEiJ_P0040105 Mbnl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039608.1 MGP_CASTEiJ_G0020746.1 mouse_genomes_project 14 57309350 57386124 - MGP_CASTEiJ_P0039608 Scara3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039609.1 MGP_CASTEiJ_G0020746.1 mouse_genomes_project 14 57350953 57386331 - MGP_CASTEiJ_P0039609 Scara3 protein_coding protein_coding MGP_CASTEiJ_T0038268.1 MGP_CASTEiJ_G0020326.1 mouse_genomes_project 14 18607703 18614058 + Ppif protein_coding retained_intron MGP_CASTEiJ_T0038269.1 MGP_CASTEiJ_G0020326.1 mouse_genomes_project 14 18607719 18614062 + MGP_CASTEiJ_P0038269 Ppif protein_coding protein_coding MGP_CASTEiJ_T0037995.1 MGP_CASTEiJ_G0020251.1 mouse_genomes_project 14 770776 1017363 - MGP_CASTEiJ_P0037995 4930452B06Rik protein_coding protein_coding MGP_CASTEiJ_T0002554.1 MGP_CASTEiJ_G0002455.1 mouse_genomes_project 14 44210603 44211134 + MGP_CASTEiJ_P0002554 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039728.1 MGP_CASTEiJ_G0020791.1 mouse_genomes_project 14 61624094 61637795 - MGP_CASTEiJ_P0039728 Pdlim2 protein_coding protein_coding MGP_CASTEiJ_T0039729.1 MGP_CASTEiJ_G0020791.1 mouse_genomes_project 14 61624107 61636933 - MGP_CASTEiJ_P0039729 Pdlim2 protein_coding protein_coding MGP_CASTEiJ_T0039730.1 MGP_CASTEiJ_G0020791.1 mouse_genomes_project 14 61624238 61627722 - MGP_CASTEiJ_P0039730 Pdlim2 protein_coding protein_coding MGP_CASTEiJ_T0039731.1 MGP_CASTEiJ_G0020791.1 mouse_genomes_project 14 61624423 61628277 - MGP_CASTEiJ_P0039731 Pdlim2 protein_coding protein_coding MGP_CASTEiJ_T0039732.1 MGP_CASTEiJ_G0020791.1 mouse_genomes_project 14 61624474 61627856 - MGP_CASTEiJ_P0039732 Pdlim2 protein_coding protein_coding MGP_CASTEiJ_T0039733.1 MGP_CASTEiJ_G0020791.1 mouse_genomes_project 14 61627646 61635547 - MGP_CASTEiJ_P0039733 Pdlim2 protein_coding protein_coding MGP_CASTEiJ_T0039734.1 MGP_CASTEiJ_G0020791.1 mouse_genomes_project 14 61627672 61636933 - Pdlim2 protein_coding retained_intron MGP_CASTEiJ_T0039735.1 MGP_CASTEiJ_G0020791.1 mouse_genomes_project 14 61629308 61635540 - Pdlim2 protein_coding retained_intron MGP_CASTEiJ_T0039736.1 MGP_CASTEiJ_G0020791.1 mouse_genomes_project 14 61631339 61635534 - Pdlim2 protein_coding retained_intron MGP_CASTEiJ_T0039737.1 MGP_CASTEiJ_G0020791.1 mouse_genomes_project 14 61631417 61631893 - Pdlim2 protein_coding retained_intron MGP_CASTEiJ_T0038914.1 MGP_CASTEiJ_G0020527.1 mouse_genomes_project 14 42069705 42073392 - MGP_CASTEiJ_P0038914 Tmem55b protein_coding protein_coding MGP_CASTEiJ_T0038915.1 MGP_CASTEiJ_G0020527.1 mouse_genomes_project 14 42069770 42073412 - MGP_CASTEiJ_P0038915 Tmem55b protein_coding protein_coding MGP_CASTEiJ_T0038916.1 MGP_CASTEiJ_G0020527.1 mouse_genomes_project 14 42069772 42073407 - Tmem55b protein_coding retained_intron MGP_CASTEiJ_T0038917.1 MGP_CASTEiJ_G0020527.1 mouse_genomes_project 14 42070421 42071765 - MGP_CASTEiJ_P0038917 Tmem55b protein_coding protein_coding MGP_CASTEiJ_T0038918.1 MGP_CASTEiJ_G0020527.1 mouse_genomes_project 14 42071381 42073359 - MGP_CASTEiJ_P0038918 Tmem55b protein_coding protein_coding MGP_CASTEiJ_T0038919.1 MGP_CASTEiJ_G0020527.1 mouse_genomes_project 14 42071477 42073389 - Tmem55b protein_coding retained_intron MGP_CASTEiJ_T0038920.1 MGP_CASTEiJ_G0020527.1 mouse_genomes_project 14 42071579 42072320 - Tmem55b protein_coding retained_intron MGP_CASTEiJ_T0038921.1 MGP_CASTEiJ_G0020527.1 mouse_genomes_project 14 42071813 42073394 - Tmem55b protein_coding retained_intron MGP_CASTEiJ_T0038922.1 MGP_CASTEiJ_G0020527.1 mouse_genomes_project 14 42071890 42073356 - Tmem55b protein_coding retained_intron MGP_CASTEiJ_T0000876.1 MGP_CASTEiJ_G0000815.1 mouse_genomes_project 14 52818633 52821553 - TEC TEC MGP_CASTEiJ_T0039762.1 MGP_CASTEiJ_G0020801.1 mouse_genomes_project 14 62040859 62044560 + MGP_CASTEiJ_P0039762 Reep4 protein_coding protein_coding MGP_CASTEiJ_T0038864.1 MGP_CASTEiJ_G0020494.1 mouse_genomes_project 14 40773406 40886035 - MGP_CASTEiJ_P0038864 3632451O06Rik protein_coding protein_coding MGP_CASTEiJ_T0038865.1 MGP_CASTEiJ_G0020494.1 mouse_genomes_project 14 40773514 40886023 - MGP_CASTEiJ_P0038865 3632451O06Rik protein_coding protein_coding MGP_CASTEiJ_T0038866.1 MGP_CASTEiJ_G0020494.1 mouse_genomes_project 14 40823500 40848235 - 3632451O06Rik protein_coding processed_transcript MGP_CASTEiJ_T0000892.1 MGP_CASTEiJ_G0000831.1 mouse_genomes_project 14 111167833 111168741 + TEC TEC MGP_CASTEiJ_T0038889.1 MGP_CASTEiJ_G0020514.1 mouse_genomes_project 14 41731306 41732411 + MGP_CASTEiJ_P0038889 Olfr744 protein_coding protein_coding MGP_CASTEiJ_T0039786.1 MGP_CASTEiJ_G0020811.1 mouse_genomes_project 14 64139561 64292191 - MGP_CASTEiJ_P0039786 Fndc3a protein_coding protein_coding MGP_CASTEiJ_T0039787.1 MGP_CASTEiJ_G0020811.1 mouse_genomes_project 14 64141160 64208516 - MGP_CASTEiJ_P0039787 Fndc3a protein_coding protein_coding MGP_CASTEiJ_T0039788.1 MGP_CASTEiJ_G0020811.1 mouse_genomes_project 14 64164388 64169402 - Fndc3a protein_coding retained_intron MGP_CASTEiJ_T0039789.1 MGP_CASTEiJ_G0020811.1 mouse_genomes_project 14 64169425 64312919 - MGP_CASTEiJ_P0039789 Fndc3a protein_coding protein_coding MGP_CASTEiJ_T0039790.1 MGP_CASTEiJ_G0020811.1 mouse_genomes_project 14 64180943 64250575 - MGP_CASTEiJ_P0039790 Fndc3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039791.1 MGP_CASTEiJ_G0020811.1 mouse_genomes_project 14 64203910 64313374 - Fndc3a protein_coding retained_intron MGP_CASTEiJ_T0039792.1 MGP_CASTEiJ_G0020811.1 mouse_genomes_project 14 64247745 64313220 - Fndc3a protein_coding retained_intron MGP_CASTEiJ_T0000878.1 MGP_CASTEiJ_G0000817.1 mouse_genomes_project 14 52835837 52837989 + TEC TEC MGP_CASTEiJ_T0040128.1 MGP_CASTEiJ_G0020930.1 mouse_genomes_project 14 117247638 117256576 - MGP_CASTEiJ_P0040128 Zic5 protein_coding protein_coding MGP_CASTEiJ_T0040129.1 MGP_CASTEiJ_G0020930.1 mouse_genomes_project 14 117250046 117250875 - Zic5 protein_coding processed_transcript MGP_CASTEiJ_T0039275.1 MGP_CASTEiJ_G0020616.1 mouse_genomes_project 14 46335415 46347386 + MGP_CASTEiJ_P0039275 Rnf31 protein_coding protein_coding MGP_CASTEiJ_T0039276.1 MGP_CASTEiJ_G0020616.1 mouse_genomes_project 14 46335451 46341359 + MGP_CASTEiJ_P0039276 Rnf31 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039277.1 MGP_CASTEiJ_G0020616.1 mouse_genomes_project 14 46335982 46347357 + MGP_CASTEiJ_P0039277 Rnf31 protein_coding protein_coding MGP_CASTEiJ_T0039278.1 MGP_CASTEiJ_G0020616.1 mouse_genomes_project 14 46336174 46336655 + Rnf31 protein_coding retained_intron MGP_CASTEiJ_T0039279.1 MGP_CASTEiJ_G0020616.1 mouse_genomes_project 14 46342075 46342641 + Rnf31 protein_coding retained_intron MGP_CASTEiJ_T0003423.1 MGP_CASTEiJ_G0003121.1 mouse_genomes_project 14 31866682 31875777 + Gm20641 antisense antisense MGP_CASTEiJ_T0101534.1 MGP_CASTEiJ_G0038422.1 mouse_genomes_project 14 49859783 49860265 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101535.1 MGP_CASTEiJ_G0038422.1 mouse_genomes_project 14 49860186 49861178 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0038523.1 MGP_CASTEiJ_G0020392.1 mouse_genomes_project 14 24596720 24687989 - MGP_CASTEiJ_P0038523 Hacl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038527.1 MGP_CASTEiJ_G0020392.1 mouse_genomes_project 14 24645569 24688056 - MGP_CASTEiJ_P0038527 Hacl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038528.1 MGP_CASTEiJ_G0020392.1 mouse_genomes_project 14 24653918 24688079 - MGP_CASTEiJ_P0038528 Hacl1 protein_coding protein_coding MGP_CASTEiJ_T0038529.1 MGP_CASTEiJ_G0020392.1 mouse_genomes_project 14 24654352 24659335 - Hacl1 protein_coding processed_transcript MGP_CASTEiJ_T0038530.1 MGP_CASTEiJ_G0020392.1 mouse_genomes_project 14 24654657 24656847 - Hacl1 protein_coding processed_transcript MGP_CASTEiJ_T0038531.1 MGP_CASTEiJ_G0020392.1 mouse_genomes_project 14 24654699 24688024 - MGP_CASTEiJ_P0038531 Hacl1 protein_coding protein_coding MGP_CASTEiJ_T0038532.1 MGP_CASTEiJ_G0020392.1 mouse_genomes_project 14 24654699 24687989 - MGP_CASTEiJ_P0038532 Hacl1 protein_coding protein_coding MGP_CASTEiJ_T0038533.1 MGP_CASTEiJ_G0020392.1 mouse_genomes_project 14 24654699 24687989 - MGP_CASTEiJ_P0038533 Hacl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038534.1 MGP_CASTEiJ_G0020392.1 mouse_genomes_project 14 24654699 24687989 - MGP_CASTEiJ_P0038534 Hacl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038535.1 MGP_CASTEiJ_G0020392.1 mouse_genomes_project 14 24673980 24688288 - MGP_CASTEiJ_P0038535 Hacl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038536.1 MGP_CASTEiJ_G0020392.1 mouse_genomes_project 14 24677103 24688373 - MGP_CASTEiJ_P0038536 Hacl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038537.1 MGP_CASTEiJ_G0020392.1 mouse_genomes_project 14 24677912 24688058 - Hacl1 protein_coding retained_intron MGP_CASTEiJ_T0038538.1 MGP_CASTEiJ_G0020392.1 mouse_genomes_project 14 24682849 24688023 - Hacl1 protein_coding retained_intron MGP_CASTEiJ_T0038539.1 MGP_CASTEiJ_G0020392.1 mouse_genomes_project 14 24682988 24688402 - Hacl1 protein_coding retained_intron MGP_CASTEiJ_T0003433.1 MGP_CASTEiJ_G0003130.1 mouse_genomes_project 14 45323278 45327350 + 4930579G18Rik antisense antisense MGP_CASTEiJ_T0002445.1 MGP_CASTEiJ_G0002356.1 mouse_genomes_project 14 44815249 44815310 + MGP_CASTEiJ_P0002445 Traj44 TR_J_gene TR_J_gene MGP_CASTEiJ_T0038662.1 MGP_CASTEiJ_G0020435.1 mouse_genomes_project 14 27611651 27704453 - MGP_CASTEiJ_P0038662 Bmpr1a protein_coding protein_coding MGP_CASTEiJ_T0038663.1 MGP_CASTEiJ_G0020435.1 mouse_genomes_project 14 27615418 27661171 - MGP_CASTEiJ_P0038663 Bmpr1a protein_coding protein_coding MGP_CASTEiJ_T0038664.1 MGP_CASTEiJ_G0020435.1 mouse_genomes_project 14 27635967 27705107 - MGP_CASTEiJ_P0038664 Bmpr1a protein_coding protein_coding MGP_CASTEiJ_T0038665.1 MGP_CASTEiJ_G0020435.1 mouse_genomes_project 14 27644655 27704294 - MGP_CASTEiJ_P0038665 Bmpr1a protein_coding protein_coding MGP_CASTEiJ_T0038605.1 MGP_CASTEiJ_G0020412.1 mouse_genomes_project 14 25971553 26062476 + MGP_CASTEiJ_P0038605 Vstm4 protein_coding protein_coding MGP_CASTEiJ_T0038058.1 MGP_CASTEiJ_G0020274.1 mouse_genomes_project 14 8936530 9020711 + MGP_CASTEiJ_P0038058 Top2b protein_coding protein_coding MGP_CASTEiJ_T0038059.1 MGP_CASTEiJ_G0020274.1 mouse_genomes_project 14 8936995 9011251 + MGP_CASTEiJ_P0038059 Top2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0038060.1 MGP_CASTEiJ_G0020274.1 mouse_genomes_project 14 8974241 8978195 + Top2b protein_coding retained_intron MGP_CASTEiJ_T0038061.1 MGP_CASTEiJ_G0020274.1 mouse_genomes_project 14 8996376 9005133 + MGP_CASTEiJ_P0038061 Top2b protein_coding protein_coding MGP_CASTEiJ_T0038062.1 MGP_CASTEiJ_G0020274.1 mouse_genomes_project 14 8998524 9004812 + MGP_CASTEiJ_P0038062 Top2b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038063.1 MGP_CASTEiJ_G0020274.1 mouse_genomes_project 14 9001294 9013614 + MGP_CASTEiJ_P0038063 Top2b protein_coding protein_coding MGP_CASTEiJ_T0038064.1 MGP_CASTEiJ_G0020274.1 mouse_genomes_project 14 9011442 9018430 + Top2b protein_coding retained_intron MGP_CASTEiJ_T0016639.1 MGP_CASTEiJ_G0014583.1 mouse_genomes_project 14 52750934 52834699 - Dleu2 processed_transcript lincRNA MGP_CASTEiJ_T0016640.1 MGP_CASTEiJ_G0014583.1 mouse_genomes_project 14 52751129 52834640 - Dleu2 processed_transcript lincRNA MGP_CASTEiJ_T0016641.1 MGP_CASTEiJ_G0014583.1 mouse_genomes_project 14 52751568 52834628 - Dleu2 processed_transcript lincRNA MGP_CASTEiJ_T0016642.1 MGP_CASTEiJ_G0014583.1 mouse_genomes_project 14 52751685 52799860 - Dleu2 processed_transcript lincRNA MGP_CASTEiJ_T0016643.1 MGP_CASTEiJ_G0014583.1 mouse_genomes_project 14 52751820 52799825 - Dleu2 processed_transcript lincRNA MGP_CASTEiJ_T0016644.1 MGP_CASTEiJ_G0014583.1 mouse_genomes_project 14 52767693 52769092 - Dleu2 processed_transcript TEC MGP_CASTEiJ_T0016645.1 MGP_CASTEiJ_G0014583.1 mouse_genomes_project 14 52768815 52834651 - Dleu2 processed_transcript lincRNA MGP_CASTEiJ_T0016646.1 MGP_CASTEiJ_G0014583.1 mouse_genomes_project 14 52774514 52799800 - Dleu2 processed_transcript lincRNA MGP_CASTEiJ_T0016647.1 MGP_CASTEiJ_G0014583.1 mouse_genomes_project 14 52776848 52781990 - Dleu2 processed_transcript TEC MGP_CASTEiJ_T0016648.1 MGP_CASTEiJ_G0014583.1 mouse_genomes_project 14 52777695 52834651 - Dleu2 processed_transcript lincRNA MGP_CASTEiJ_T0016649.1 MGP_CASTEiJ_G0014583.1 mouse_genomes_project 14 52782396 52799660 - Dleu2 processed_transcript lincRNA MGP_CASTEiJ_T0016650.1 MGP_CASTEiJ_G0014583.1 mouse_genomes_project 14 52782446 52799860 - Dleu2 processed_transcript lincRNA MGP_CASTEiJ_T0016651.1 MGP_CASTEiJ_G0014583.1 mouse_genomes_project 14 52785311 52834640 - Dleu2 processed_transcript lincRNA MGP_CASTEiJ_T0016652.1 MGP_CASTEiJ_G0014583.1 mouse_genomes_project 14 52794159 52834639 - Dleu2 processed_transcript lincRNA MGP_CASTEiJ_T0016653.1 MGP_CASTEiJ_G0014583.1 mouse_genomes_project 14 52794233 52834651 - Dleu2 processed_transcript lincRNA MGP_CASTEiJ_T0002442.1 MGP_CASTEiJ_G0002353.1 mouse_genomes_project 14 44813371 44813428 + MGP_CASTEiJ_P0002442 Traj47 TR_J_gene TR_J_gene MGP_CASTEiJ_T0039982.1 MGP_CASTEiJ_G0020878.1 mouse_genomes_project 14 93066358 93346092 - MGP_CASTEiJ_P0039982 Klf12 protein_coding protein_coding MGP_CASTEiJ_T0038737.1 MGP_CASTEiJ_G0020465.1 mouse_genomes_project 14 36205029 36223801 + MGP_CASTEiJ_P0038737 Psmc6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038738.1 MGP_CASTEiJ_G0020465.1 mouse_genomes_project 14 36205057 36224712 + MGP_CASTEiJ_P0038738 Psmc6 protein_coding protein_coding MGP_CASTEiJ_T0038152.1 MGP_CASTEiJ_G0020303.1 mouse_genomes_project 14 13381163 13386393 + MGP_CASTEiJ_P0038152 Fut11 protein_coding protein_coding MGP_CASTEiJ_T0002502.1 MGP_CASTEiJ_G0002411.1 mouse_genomes_project 14 44803567 44803674 + TR_J_pseudogene TR_J_pseudogene MGP_CASTEiJ_T0038065.1 MGP_CASTEiJ_G0020275.1 mouse_genomes_project 14 9020765 9166249 - MGP_CASTEiJ_P0038065 Rarb protein_coding protein_coding MGP_CASTEiJ_T0040086.1 MGP_CASTEiJ_G0020913.1 mouse_genomes_project 14 113532763 113672859 - MGP_CASTEiJ_P0040086 Uggt2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040087.1 MGP_CASTEiJ_G0020913.1 mouse_genomes_project 14 113535946 113566092 - Uggt2 protein_coding retained_intron MGP_CASTEiJ_T0040088.1 MGP_CASTEiJ_G0020913.1 mouse_genomes_project 14 113535946 113672904 - MGP_CASTEiJ_P0040088 Uggt2 protein_coding protein_coding MGP_CASTEiJ_T0040089.1 MGP_CASTEiJ_G0020913.1 mouse_genomes_project 14 113537098 113565852 - Uggt2 protein_coding retained_intron MGP_CASTEiJ_T0040090.1 MGP_CASTEiJ_G0020913.1 mouse_genomes_project 14 113537323 113565373 - Uggt2 protein_coding processed_transcript MGP_CASTEiJ_T0040091.1 MGP_CASTEiJ_G0020913.1 mouse_genomes_project 14 113537725 113566026 - Uggt2 protein_coding retained_intron MGP_CASTEiJ_T0040092.1 MGP_CASTEiJ_G0020913.1 mouse_genomes_project 14 113555799 113567691 - Uggt2 protein_coding processed_transcript MGP_CASTEiJ_T0040093.1 MGP_CASTEiJ_G0020913.1 mouse_genomes_project 14 113559434 113566799 - Uggt2 protein_coding retained_intron MGP_CASTEiJ_T0040094.1 MGP_CASTEiJ_G0020913.1 mouse_genomes_project 14 113559600 113566185 - Uggt2 protein_coding processed_transcript MGP_CASTEiJ_T0040095.1 MGP_CASTEiJ_G0020913.1 mouse_genomes_project 14 113560549 113578269 - MGP_CASTEiJ_P0040095 Uggt2 protein_coding protein_coding MGP_CASTEiJ_T0040096.1 MGP_CASTEiJ_G0020913.1 mouse_genomes_project 14 113573040 113593631 - MGP_CASTEiJ_P0040096 Uggt2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040097.1 MGP_CASTEiJ_G0020913.1 mouse_genomes_project 14 113573040 113619456 - MGP_CASTEiJ_P0040097 Uggt2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040098.1 MGP_CASTEiJ_G0020913.1 mouse_genomes_project 14 113593758 113597703 - Uggt2 protein_coding retained_intron MGP_CASTEiJ_T0040099.1 MGP_CASTEiJ_G0020913.1 mouse_genomes_project 14 113605908 113610900 - Uggt2 protein_coding retained_intron MGP_CASTEiJ_T0040100.1 MGP_CASTEiJ_G0020913.1 mouse_genomes_project 14 113621679 113672904 - Uggt2 protein_coding retained_intron MGP_CASTEiJ_T0037971.1 MGP_CASTEiJ_G0020242.1 mouse_genomes_project 14 276150 306198 - MGP_CASTEiJ_P0037971 Dnase1l3 protein_coding protein_coding MGP_CASTEiJ_T0037972.1 MGP_CASTEiJ_G0020242.1 mouse_genomes_project 14 287626 288947 - Dnase1l3 protein_coding processed_transcript MGP_CASTEiJ_T0039923.1 MGP_CASTEiJ_G0020853.1 mouse_genomes_project 14 71216736 71241324 - MGP_CASTEiJ_P0039923 Rgcc protein_coding unknown_likely_coding MGP_CASTEiJ_T0039924.1 MGP_CASTEiJ_G0020853.1 mouse_genomes_project 14 71227705 71241759 - MGP_CASTEiJ_P0039924 Rgcc protein_coding protein_coding MGP_CASTEiJ_T0039540.1 MGP_CASTEiJ_G0020718.1 mouse_genomes_project 14 54473246 54522887 - MGP_CASTEiJ_P0039540 Gata4 protein_coding protein_coding MGP_CASTEiJ_T0039541.1 MGP_CASTEiJ_G0020718.1 mouse_genomes_project 14 54473250 54522907 - MGP_CASTEiJ_P0039541 Gata4 protein_coding protein_coding MGP_CASTEiJ_T0039542.1 MGP_CASTEiJ_G0020718.1 mouse_genomes_project 14 54518755 54549426 - MGP_CASTEiJ_P0039542 Gata4 protein_coding protein_coding MGP_CASTEiJ_T0039543.1 MGP_CASTEiJ_G0020718.1 mouse_genomes_project 14 54518768 54548861 - MGP_CASTEiJ_P0039543 Gata4 protein_coding protein_coding MGP_CASTEiJ_T0039544.1 MGP_CASTEiJ_G0020718.1 mouse_genomes_project 14 54518768 54548861 - MGP_CASTEiJ_P0039544 Gata4 protein_coding protein_coding MGP_CASTEiJ_T0002578.1 MGP_CASTEiJ_G0002477.1 mouse_genomes_project 14 44472847 44473570 + MGP_CASTEiJ_P0002578 Trav18 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002579.1 MGP_CASTEiJ_G0002477.1 mouse_genomes_project 14 44472847 44473570 + MGP_CASTEiJ_P0002579 Trav18 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039949.1 MGP_CASTEiJ_G0020863.1 mouse_genomes_project 14 75762000 75762507 + MGP_CASTEiJ_P0039949 protein_coding protein_coding MGP_CASTEiJ_T0003402.1 MGP_CASTEiJ_G0003107.1 mouse_genomes_project 14 13073930 13074521 + 7330404K18Rik antisense antisense MGP_CASTEiJ_T0038334.1 MGP_CASTEiJ_G0020345.1 mouse_genomes_project 14 19400883 19619799 + MGP_CASTEiJ_P0038334 Dnah12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038335.1 MGP_CASTEiJ_G0020345.1 mouse_genomes_project 14 19402770 19540537 + MGP_CASTEiJ_P0038335 Dnah12 protein_coding protein_coding MGP_CASTEiJ_T0038336.1 MGP_CASTEiJ_G0020345.1 mouse_genomes_project 14 19485696 19488436 + MGP_CASTEiJ_P0038336 Dnah12 protein_coding protein_coding MGP_CASTEiJ_T0038337.1 MGP_CASTEiJ_G0020345.1 mouse_genomes_project 14 19557702 19619868 + MGP_CASTEiJ_P0038337 Dnah12 protein_coding protein_coding MGP_CASTEiJ_T0099399.1 MGP_CASTEiJ_G0036312.1 mouse_genomes_project 14 78835204 78835344 + Gm25115 snRNA snRNA MGP_CASTEiJ_T0012640.1 MGP_CASTEiJ_G0010803.1 mouse_genomes_project 14 47658322 47681043 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039879.1 MGP_CASTEiJ_G0020838.1 mouse_genomes_project 14 67864540 67892340 + MGP_CASTEiJ_P0039879 Nufip1 protein_coding protein_coding MGP_CASTEiJ_T0038155.1 MGP_CASTEiJ_G0020306.1 mouse_genomes_project 14 13409762 13420359 - MGP_CASTEiJ_P0038155 Ndst2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039376.1 MGP_CASTEiJ_G0020658.1 mouse_genomes_project 14 47521933 47551543 + MGP_CASTEiJ_P0039376 Mphosph8 protein_coding protein_coding MGP_CASTEiJ_T0039377.1 MGP_CASTEiJ_G0020658.1 mouse_genomes_project 14 47525714 47527458 + Mphosph8 protein_coding processed_transcript MGP_CASTEiJ_T0039378.1 MGP_CASTEiJ_G0020658.1 mouse_genomes_project 14 47542551 47545396 + Mphosph8 protein_coding processed_transcript MGP_CASTEiJ_T0039379.1 MGP_CASTEiJ_G0020658.1 mouse_genomes_project 14 47547294 47551540 + Mphosph8 protein_coding processed_transcript MGP_CASTEiJ_T0039380.1 MGP_CASTEiJ_G0020658.1 mouse_genomes_project 14 47547580 47551541 + Mphosph8 protein_coding processed_transcript MGP_CASTEiJ_T0100616.1 MGP_CASTEiJ_G0037529.1 mouse_genomes_project 14 47715725 47715811 - Gm25432 snoRNA snoRNA MGP_CASTEiJ_T0039212.1 MGP_CASTEiJ_G0020603.1 mouse_genomes_project 14 45816032 45826137 - MGP_CASTEiJ_P0039212 Jph4 protein_coding protein_coding MGP_CASTEiJ_T0039213.1 MGP_CASTEiJ_G0020603.1 mouse_genomes_project 14 45816477 45824760 - MGP_CASTEiJ_P0039213 Jph4 protein_coding protein_coding MGP_CASTEiJ_T0039214.1 MGP_CASTEiJ_G0020603.1 mouse_genomes_project 14 45818848 45819765 - Jph4 protein_coding retained_intron MGP_CASTEiJ_T0039215.1 MGP_CASTEiJ_G0020603.1 mouse_genomes_project 14 45820704 45825782 - Jph4 protein_coding retained_intron MGP_CASTEiJ_T0039565.1 MGP_CASTEiJ_G0020727.1 mouse_genomes_project 14 55305313 55351776 + MGP_CASTEiJ_P0039565 Rp1l1 protein_coding protein_coding MGP_CASTEiJ_T0040019.1 MGP_CASTEiJ_G0020888.1 mouse_genomes_project 14 96398720 96420668 - MGP_CASTEiJ_P0040019 Fbxl3 protein_coding protein_coding MGP_CASTEiJ_T0040020.1 MGP_CASTEiJ_G0020888.1 mouse_genomes_project 14 96399510 96420119 - MGP_CASTEiJ_P0040020 Fbxl3 protein_coding protein_coding MGP_CASTEiJ_T0040021.1 MGP_CASTEiJ_G0020888.1 mouse_genomes_project 14 96400161 96420095 - MGP_CASTEiJ_P0040021 Fbxl3 protein_coding protein_coding MGP_CASTEiJ_T0040022.1 MGP_CASTEiJ_G0020888.1 mouse_genomes_project 14 96401582 96410916 - Fbxl3 protein_coding retained_intron MGP_CASTEiJ_T0040023.1 MGP_CASTEiJ_G0020888.1 mouse_genomes_project 14 96410514 96420680 - MGP_CASTEiJ_P0040023 Fbxl3 protein_coding protein_coding MGP_CASTEiJ_T0040024.1 MGP_CASTEiJ_G0020888.1 mouse_genomes_project 14 96410552 96416865 - MGP_CASTEiJ_P0040024 Fbxl3 protein_coding protein_coding MGP_CASTEiJ_T0100614.1 MGP_CASTEiJ_G0037527.1 mouse_genomes_project 14 45875691 45875823 - Gm23596 snoRNA snoRNA MGP_CASTEiJ_T0099408.1 MGP_CASTEiJ_G0036321.1 mouse_genomes_project 14 93983987 93984089 - Gm23538 snRNA snRNA MGP_CASTEiJ_T0002450.1 MGP_CASTEiJ_G0002361.1 mouse_genomes_project 14 44821449 44821512 + MGP_CASTEiJ_P0002450 Traj39 TR_J_gene TR_J_gene MGP_CASTEiJ_T0039946.1 MGP_CASTEiJ_G0020861.1 mouse_genomes_project 14 71831154 71836376 - MGP_CASTEiJ_P0039946 Gm10845 protein_coding protein_coding MGP_CASTEiJ_T0038700.1 MGP_CASTEiJ_G0020448.1 mouse_genomes_project 14 30445335 30457459 - 2610528A11Rik protein_coding processed_transcript MGP_CASTEiJ_T0038701.1 MGP_CASTEiJ_G0020448.1 mouse_genomes_project 14 30445337 30453480 - MGP_CASTEiJ_P0038701 2610528A11Rik protein_coding protein_coding MGP_CASTEiJ_T0040058.1 MGP_CASTEiJ_G0020899.1 mouse_genomes_project 14 99534452 99537606 + MGP_CASTEiJ_P0040058 Trim52 protein_coding protein_coding MGP_CASTEiJ_T0040059.1 MGP_CASTEiJ_G0020899.1 mouse_genomes_project 14 99534453 99565817 + Trim52 protein_coding processed_transcript MGP_CASTEiJ_T0040076.1 MGP_CASTEiJ_G0020909.1 mouse_genomes_project 14 112985584 113225029 - MGP_CASTEiJ_P0040076 Abcc4 protein_coding protein_coding MGP_CASTEiJ_T0040077.1 MGP_CASTEiJ_G0020909.1 mouse_genomes_project 14 112985584 113225029 - MGP_CASTEiJ_P0040077 Abcc4 protein_coding protein_coding MGP_CASTEiJ_T0039161.1 MGP_CASTEiJ_G0020588.1 mouse_genomes_project 14 45562089 45565247 - Ppp1r3e protein_coding processed_transcript MGP_CASTEiJ_T0039162.1 MGP_CASTEiJ_G0020588.1 mouse_genomes_project 14 45564651 45569549 - MGP_CASTEiJ_P0039162 Ppp1r3e protein_coding protein_coding MGP_CASTEiJ_T0039163.1 MGP_CASTEiJ_G0020588.1 mouse_genomes_project 14 45567588 45568620 - Ppp1r3e protein_coding TEC MGP_CASTEiJ_T0039164.1 MGP_CASTEiJ_G0020588.1 mouse_genomes_project 14 45567588 45569537 - MGP_CASTEiJ_P0039164 Ppp1r3e protein_coding protein_coding MGP_CASTEiJ_T0040025.1 MGP_CASTEiJ_G0020889.1 mouse_genomes_project 14 96434939 96483887 - MGP_CASTEiJ_P0040025 Mycbp2 protein_coding protein_coding MGP_CASTEiJ_T0040026.1 MGP_CASTEiJ_G0020889.1 mouse_genomes_project 14 96434939 96674543 - MGP_CASTEiJ_P0040026 Mycbp2 protein_coding protein_coding MGP_CASTEiJ_T0040027.1 MGP_CASTEiJ_G0020889.1 mouse_genomes_project 14 96434939 96674164 - MGP_CASTEiJ_P0040027 Mycbp2 protein_coding protein_coding MGP_CASTEiJ_T0040028.1 MGP_CASTEiJ_G0020889.1 mouse_genomes_project 14 96435648 96674263 - MGP_CASTEiJ_P0040028 Mycbp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040029.1 MGP_CASTEiJ_G0020889.1 mouse_genomes_project 14 96435661 96436931 - Mycbp2 protein_coding processed_transcript MGP_CASTEiJ_T0040030.1 MGP_CASTEiJ_G0020889.1 mouse_genomes_project 14 96465538 96480490 - Mycbp2 protein_coding retained_intron MGP_CASTEiJ_T0040031.1 MGP_CASTEiJ_G0020889.1 mouse_genomes_project 14 96483936 96519730 - MGP_CASTEiJ_P0040031 Mycbp2 protein_coding protein_coding MGP_CASTEiJ_T0040032.1 MGP_CASTEiJ_G0020889.1 mouse_genomes_project 14 96642593 96674557 - Mycbp2 protein_coding retained_intron MGP_CASTEiJ_T0038872.1 MGP_CASTEiJ_G0020500.1 mouse_genomes_project 14 41229774 41230746 - MGP_CASTEiJ_P0038872 Olfr729 protein_coding protein_coding MGP_CASTEiJ_T0000873.1 MGP_CASTEiJ_G0000812.1 mouse_genomes_project 14 45569009 45571677 + TEC TEC MGP_CASTEiJ_T0040126.1 MGP_CASTEiJ_G0020928.1 mouse_genomes_project 14 116955414 117189586 + MGP_CASTEiJ_P0040126 Clybl protein_coding protein_coding MGP_CASTEiJ_T0038112.1 MGP_CASTEiJ_G0020290.1 mouse_genomes_project 14 12950268 12993423 + MGP_CASTEiJ_P0038112 Nudt13 protein_coding protein_coding MGP_CASTEiJ_T0009737.1 MGP_CASTEiJ_G0007925.1 mouse_genomes_project 14 58570578 58570696 + Gm27647 miRNA miRNA MGP_CASTEiJ_T0038888.1 MGP_CASTEiJ_G0020513.1 mouse_genomes_project 14 41572070 41572744 + MGP_CASTEiJ_P0038888 protein_coding protein_coding MGP_CASTEiJ_T0006502.1 MGP_CASTEiJ_G0005390.1 mouse_genomes_project 14 25798289 25800160 + Gm28651 lincRNA lincRNA MGP_CASTEiJ_T0002539.1 MGP_CASTEiJ_G0002442.1 mouse_genomes_project 14 44095812 44096282 + MGP_CASTEiJ_P0002539 TR_V_gene TR_V_gene MGP_CASTEiJ_T0099377.1 MGP_CASTEiJ_G0036290.1 mouse_genomes_project 14 33370479 33370643 + Gm25012 snRNA snRNA MGP_CASTEiJ_T0002587.1 MGP_CASTEiJ_G0002483.1 mouse_genomes_project 14 44719640 44720235 + MGP_CASTEiJ_P0002587 Trdv4 TR_V_gene TR_V_gene MGP_CASTEiJ_T0038110.1 MGP_CASTEiJ_G0020288.1 mouse_genomes_project 14 12804563 12850642 - MGP_CASTEiJ_P0038110 Kcnk5 protein_coding protein_coding MGP_CASTEiJ_T0100607.1 MGP_CASTEiJ_G0037520.1 mouse_genomes_project 14 27290932 27291021 + Gm24998 snoRNA snoRNA MGP_CASTEiJ_T0100646.1 MGP_CASTEiJ_G0037559.1 mouse_genomes_project 14 98013759 98013876 - Gm25724 snoRNA snoRNA MGP_CASTEiJ_T0038718.1 MGP_CASTEiJ_G0020455.1 mouse_genomes_project 14 34447476 34472318 + MGP_CASTEiJ_P0038718 Dydc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038719.1 MGP_CASTEiJ_G0020455.1 mouse_genomes_project 14 34447476 34472325 + MGP_CASTEiJ_P0038719 Dydc1 protein_coding protein_coding MGP_CASTEiJ_T0038720.1 MGP_CASTEiJ_G0020455.1 mouse_genomes_project 14 34447505 34472321 + MGP_CASTEiJ_P0038720 Dydc1 protein_coding protein_coding MGP_CASTEiJ_T0002558.1 MGP_CASTEiJ_G0002459.1 mouse_genomes_project 14 44260064 44262258 + MGP_CASTEiJ_P0002558 TR_V_gene TR_V_gene MGP_CASTEiJ_T0100654.1 MGP_CASTEiJ_G0037567.1 mouse_genomes_project 14 118693261 118693389 + Gm25272 snoRNA snoRNA MGP_CASTEiJ_T0012638.1 MGP_CASTEiJ_G0010801.1 mouse_genomes_project 14 47650980 47651153 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039661.1 MGP_CASTEiJ_G0020761.1 mouse_genomes_project 14 58507787 58568226 - MGP_CASTEiJ_P0039661 Ppp2r2a protein_coding protein_coding MGP_CASTEiJ_T0038214.1 MGP_CASTEiJ_G0020317.1 mouse_genomes_project 14 14612979 14614823 - MGP_CASTEiJ_P0038214 Comtd1 protein_coding protein_coding MGP_CASTEiJ_T0038215.1 MGP_CASTEiJ_G0020317.1 mouse_genomes_project 14 14613108 14614845 - Comtd1 protein_coding retained_intron MGP_CASTEiJ_T0038216.1 MGP_CASTEiJ_G0020317.1 mouse_genomes_project 14 14613114 14613759 - Comtd1 protein_coding retained_intron MGP_CASTEiJ_T0038886.1 MGP_CASTEiJ_G0020511.1 mouse_genomes_project 14 41535404 41536334 + MGP_CASTEiJ_P0038886 protein_coding protein_coding MGP_CASTEiJ_T0003453.1 MGP_CASTEiJ_G0003145.1 mouse_genomes_project 14 58821791 58831633 - Gm6878 antisense antisense MGP_CASTEiJ_T0038659.1 MGP_CASTEiJ_G0020432.1 mouse_genomes_project 14 27554027 27557589 - MGP_CASTEiJ_P0038659 Fam25c protein_coding protein_coding MGP_CASTEiJ_T0100625.1 MGP_CASTEiJ_G0037538.1 mouse_genomes_project 14 59758148 59758270 - Gm22319 snoRNA snoRNA MGP_CASTEiJ_T0038083.1 MGP_CASTEiJ_G0020281.1 mouse_genomes_project 14 11140310 11454746 - MGP_CASTEiJ_P0038083 Ube2e2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038084.1 MGP_CASTEiJ_G0020281.1 mouse_genomes_project 14 11140312 11460068 - MGP_CASTEiJ_P0038084 Ube2e2 protein_coding protein_coding MGP_CASTEiJ_T0038085.1 MGP_CASTEiJ_G0020281.1 mouse_genomes_project 14 11140775 11454594 - MGP_CASTEiJ_P0038085 Ube2e2 protein_coding protein_coding MGP_CASTEiJ_T0038086.1 MGP_CASTEiJ_G0020281.1 mouse_genomes_project 14 11141028 11454738 - MGP_CASTEiJ_P0038086 Ube2e2 protein_coding protein_coding MGP_CASTEiJ_T0038087.1 MGP_CASTEiJ_G0020281.1 mouse_genomes_project 14 11141097 11159721 - Ube2e2 protein_coding processed_transcript MGP_CASTEiJ_T0038088.1 MGP_CASTEiJ_G0020281.1 mouse_genomes_project 14 11141097 11454690 - MGP_CASTEiJ_P0038088 Ube2e2 protein_coding protein_coding MGP_CASTEiJ_T0038089.1 MGP_CASTEiJ_G0020281.1 mouse_genomes_project 14 11156295 11232881 - Ube2e2 protein_coding processed_transcript MGP_CASTEiJ_T0038090.1 MGP_CASTEiJ_G0020281.1 mouse_genomes_project 14 11156295 11459706 - MGP_CASTEiJ_P0038090 Ube2e2 protein_coding protein_coding MGP_CASTEiJ_T0038091.1 MGP_CASTEiJ_G0020281.1 mouse_genomes_project 14 11159613 11460010 - Ube2e2 protein_coding processed_transcript MGP_CASTEiJ_T0038092.1 MGP_CASTEiJ_G0020281.1 mouse_genomes_project 14 11192316 11459937 - MGP_CASTEiJ_P0038092 Ube2e2 protein_coding protein_coding MGP_CASTEiJ_T0038093.1 MGP_CASTEiJ_G0020281.1 mouse_genomes_project 14 11192328 11460603 - MGP_CASTEiJ_P0038093 Ube2e2 protein_coding protein_coding MGP_CASTEiJ_T0038094.1 MGP_CASTEiJ_G0020281.1 mouse_genomes_project 14 11192386 11459937 - Ube2e2 protein_coding processed_transcript MGP_CASTEiJ_T0038095.1 MGP_CASTEiJ_G0020281.1 mouse_genomes_project 14 11200340 11459985 - Ube2e2 protein_coding processed_transcript MGP_CASTEiJ_T0038096.1 MGP_CASTEiJ_G0020281.1 mouse_genomes_project 14 11452671 11459571 - Ube2e2 protein_coding retained_intron MGP_CASTEiJ_T0038781.1 MGP_CASTEiJ_G0020478.1 mouse_genomes_project 14 38188617 38228595 - MGP_CASTEiJ_P0038781 Wdhd1 protein_coding protein_coding MGP_CASTEiJ_T0038782.1 MGP_CASTEiJ_G0020478.1 mouse_genomes_project 14 38188617 38228637 - MGP_CASTEiJ_P0038782 Wdhd1 protein_coding protein_coding MGP_CASTEiJ_T0038783.1 MGP_CASTEiJ_G0020478.1 mouse_genomes_project 14 38188618 38228662 - MGP_CASTEiJ_P0038783 Wdhd1 protein_coding protein_coding MGP_CASTEiJ_T0038784.1 MGP_CASTEiJ_G0020478.1 mouse_genomes_project 14 38206908 38228637 - MGP_CASTEiJ_P0038784 Wdhd1 protein_coding protein_coding MGP_CASTEiJ_T0038785.1 MGP_CASTEiJ_G0020478.1 mouse_genomes_project 14 38222679 38228612 - Wdhd1 protein_coding retained_intron MGP_CASTEiJ_T0002503.1 MGP_CASTEiJ_G0002412.1 mouse_genomes_project 14 44807780 44807823 + TR_J_pseudogene TR_J_pseudogene MGP_CASTEiJ_T0009708.1 MGP_CASTEiJ_G0007896.1 mouse_genomes_project 14 3649641 3649726 + Mir5124b miRNA miRNA MGP_CASTEiJ_T0012636.1 MGP_CASTEiJ_G0010799.1 mouse_genomes_project 14 46780278 46780963 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099379.1 MGP_CASTEiJ_G0036292.1 mouse_genomes_project 14 39717306 39717410 + Gm23469 snRNA snRNA MGP_CASTEiJ_T0009721.1 MGP_CASTEiJ_G0007909.1 mouse_genomes_project 14 37889698 37889797 - Mir378c miRNA miRNA MGP_CASTEiJ_T0038698.1 MGP_CASTEiJ_G0020446.1 mouse_genomes_project 14 30410572 30416919 + MGP_CASTEiJ_P0038698 Lrit2 protein_coding protein_coding MGP_CASTEiJ_T0038901.1 MGP_CASTEiJ_G0020524.1 mouse_genomes_project 14 42029909 42031431 - MGP_CASTEiJ_P0038901 A930018M24Rik protein_coding protein_coding MGP_CASTEiJ_T0038428.1 MGP_CASTEiJ_G0020372.1 mouse_genomes_project 14 23921073 23936327 - MGP_CASTEiJ_P0038428 Itih1 protein_coding protein_coding MGP_CASTEiJ_T0038429.1 MGP_CASTEiJ_G0020372.1 mouse_genomes_project 14 23921073 23936315 - MGP_CASTEiJ_P0038429 Itih1 protein_coding protein_coding MGP_CASTEiJ_T0038430.1 MGP_CASTEiJ_G0020372.1 mouse_genomes_project 14 23935736 23936324 - Itih1 protein_coding retained_intron MGP_CASTEiJ_T0012654.1 MGP_CASTEiJ_G0010817.1 mouse_genomes_project 14 63375642 63376627 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0038696.1 MGP_CASTEiJ_G0020445.1 mouse_genomes_project 14 30383587 30405320 + MGP_CASTEiJ_P0038696 Lrit1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038697.1 MGP_CASTEiJ_G0020445.1 mouse_genomes_project 14 30397848 30407488 + MGP_CASTEiJ_P0038697 Lrit1 protein_coding protein_coding MGP_CASTEiJ_T0012600.1 MGP_CASTEiJ_G0010763.1 mouse_genomes_project 14 5856385 5856517 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099383.1 MGP_CASTEiJ_G0036296.1 mouse_genomes_project 14 40619348 40619489 - Gm22116 snRNA snRNA MGP_CASTEiJ_T0039367.1 MGP_CASTEiJ_G0020652.1 mouse_genomes_project 14 47046560 47051456 - MGP_CASTEiJ_P0039367 Gzmc protein_coding protein_coding MGP_CASTEiJ_T0002532.1 MGP_CASTEiJ_G0002435.1 mouse_genomes_project 14 44070222 44070752 + MGP_CASTEiJ_P0002532 Trav7d-4 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039963.1 MGP_CASTEiJ_G0020869.1 mouse_genomes_project 14 85757360 86690089 - MGP_CASTEiJ_P0039963 Pcdh9 protein_coding protein_coding MGP_CASTEiJ_T0039964.1 MGP_CASTEiJ_G0020869.1 mouse_genomes_project 14 85757652 86690089 - MGP_CASTEiJ_P0039964 Pcdh9 protein_coding protein_coding MGP_CASTEiJ_T0039965.1 MGP_CASTEiJ_G0020869.1 mouse_genomes_project 14 85757925 86690049 - MGP_CASTEiJ_P0039965 Pcdh9 protein_coding protein_coding MGP_CASTEiJ_T0039966.1 MGP_CASTEiJ_G0020869.1 mouse_genomes_project 14 85758151 86689579 - MGP_CASTEiJ_P0039966 Pcdh9 protein_coding protein_coding MGP_CASTEiJ_T0039967.1 MGP_CASTEiJ_G0020869.1 mouse_genomes_project 14 85759465 86688160 - MGP_CASTEiJ_P0039967 Pcdh9 protein_coding protein_coding MGP_CASTEiJ_T0039968.1 MGP_CASTEiJ_G0020869.1 mouse_genomes_project 14 85932613 86685176 - MGP_CASTEiJ_P0039968 Pcdh9 protein_coding protein_coding MGP_CASTEiJ_T0039969.1 MGP_CASTEiJ_G0020869.1 mouse_genomes_project 14 86681277 86690274 - MGP_CASTEiJ_P0039969 Pcdh9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039970.1 MGP_CASTEiJ_G0020869.1 mouse_genomes_project 14 86684992 86685652 - Pcdh9 protein_coding retained_intron MGP_CASTEiJ_T0039971.1 MGP_CASTEiJ_G0020869.1 mouse_genomes_project 14 86685540 86690099 - MGP_CASTEiJ_P0039971 Pcdh9 protein_coding protein_coding MGP_CASTEiJ_T0039366.1 MGP_CASTEiJ_G0020651.1 mouse_genomes_project 14 47010178 47016850 - MGP_CASTEiJ_P0039366 Gzmf protein_coding protein_coding MGP_CASTEiJ_T0038595.1 MGP_CASTEiJ_G0020405.1 mouse_genomes_project 14 25490746 25557040 - MGP_CASTEiJ_P0038595 Chat protein_coding protein_coding MGP_CASTEiJ_T0002479.1 MGP_CASTEiJ_G0002390.1 mouse_genomes_project 14 44854873 44854935 + MGP_CASTEiJ_P0002479 Traj6 TR_J_gene TR_J_gene MGP_CASTEiJ_T0038830.1 MGP_CASTEiJ_G0020487.1 mouse_genomes_project 14 39496057 39550866 + Tmem260 protein_coding retained_intron MGP_CASTEiJ_T0038831.1 MGP_CASTEiJ_G0020487.1 mouse_genomes_project 14 39496098 39562948 + MGP_CASTEiJ_P0038831 Tmem260 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038832.1 MGP_CASTEiJ_G0020487.1 mouse_genomes_project 14 39496103 39559185 + Tmem260 protein_coding retained_intron MGP_CASTEiJ_T0038833.1 MGP_CASTEiJ_G0020487.1 mouse_genomes_project 14 39496161 39562970 + MGP_CASTEiJ_P0038833 Tmem260 protein_coding protein_coding MGP_CASTEiJ_T0039265.1 MGP_CASTEiJ_G0020615.1 mouse_genomes_project 14 46331148 46334795 - MGP_CASTEiJ_P0039265 Psme2 protein_coding protein_coding MGP_CASTEiJ_T0039266.1 MGP_CASTEiJ_G0020615.1 mouse_genomes_project 14 46331149 46334809 - MGP_CASTEiJ_P0039266 Psme2 protein_coding protein_coding MGP_CASTEiJ_T0039267.1 MGP_CASTEiJ_G0020615.1 mouse_genomes_project 14 46331154 46332316 - Psme2 protein_coding retained_intron MGP_CASTEiJ_T0039268.1 MGP_CASTEiJ_G0020615.1 mouse_genomes_project 14 46331154 46333223 - Psme2 protein_coding retained_intron MGP_CASTEiJ_T0039269.1 MGP_CASTEiJ_G0020615.1 mouse_genomes_project 14 46331761 46333859 - Psme2 protein_coding retained_intron MGP_CASTEiJ_T0039270.1 MGP_CASTEiJ_G0020615.1 mouse_genomes_project 14 46331779 46334821 - MGP_CASTEiJ_P0039270 Psme2 protein_coding protein_coding MGP_CASTEiJ_T0039271.1 MGP_CASTEiJ_G0020615.1 mouse_genomes_project 14 46331790 46334572 - Psme2 protein_coding retained_intron MGP_CASTEiJ_T0039272.1 MGP_CASTEiJ_G0020615.1 mouse_genomes_project 14 46332905 46334681 - Psme2 protein_coding retained_intron MGP_CASTEiJ_T0039273.1 MGP_CASTEiJ_G0020615.1 mouse_genomes_project 14 46333028 46334656 - Psme2 protein_coding retained_intron MGP_CASTEiJ_T0039274.1 MGP_CASTEiJ_G0020615.1 mouse_genomes_project 14 46333707 46334603 - Psme2 protein_coding retained_intron MGP_CASTEiJ_T0102073.1 MGP_CASTEiJ_G0038798.1 mouse_genomes_project 14 11705200 11708399 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0012665.1 MGP_CASTEiJ_G0010828.1 mouse_genomes_project 14 91832668 91833621 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099396.1 MGP_CASTEiJ_G0036309.1 mouse_genomes_project 14 67353782 67353889 - Gm23622 snRNA snRNA MGP_CASTEiJ_T0016660.1 MGP_CASTEiJ_G0014588.1 mouse_genomes_project 14 58954691 58966230 - Gm10860 processed_transcript processed_transcript MGP_CASTEiJ_T0016657.1 MGP_CASTEiJ_G0014585.1 mouse_genomes_project 14 58744984 58745683 - Gm20675 processed_transcript processed_transcript MGP_CASTEiJ_T0038417.1 MGP_CASTEiJ_G0020370.1 mouse_genomes_project 14 23864923 23884618 + MGP_CASTEiJ_P0038417 Itih4 protein_coding protein_coding MGP_CASTEiJ_T0038418.1 MGP_CASTEiJ_G0020370.1 mouse_genomes_project 14 23864949 23884481 + MGP_CASTEiJ_P0038418 Itih4 protein_coding protein_coding MGP_CASTEiJ_T0038419.1 MGP_CASTEiJ_G0020370.1 mouse_genomes_project 14 23864949 23884585 + MGP_CASTEiJ_P0038419 Itih4 protein_coding protein_coding MGP_CASTEiJ_T0038420.1 MGP_CASTEiJ_G0020370.1 mouse_genomes_project 14 23864968 23884483 + MGP_CASTEiJ_P0038420 Itih4 protein_coding protein_coding MGP_CASTEiJ_T0038421.1 MGP_CASTEiJ_G0020370.1 mouse_genomes_project 14 23881860 23884486 + Itih4 protein_coding retained_intron MGP_CASTEiJ_T0040119.1 MGP_CASTEiJ_G0020923.1 mouse_genomes_project 14 116628571 116780585 + MGP_CASTEiJ_P0040119 Ubac2 protein_coding protein_coding MGP_CASTEiJ_T0038728.1 MGP_CASTEiJ_G0020462.1 mouse_genomes_project 14 35996908 36084201 - MGP_CASTEiJ_P0038728 Txndc16 protein_coding protein_coding MGP_CASTEiJ_T0038729.1 MGP_CASTEiJ_G0020462.1 mouse_genomes_project 14 35997359 36084232 - MGP_CASTEiJ_P0038729 Txndc16 protein_coding protein_coding MGP_CASTEiJ_T0038730.1 MGP_CASTEiJ_G0020462.1 mouse_genomes_project 14 35997370 36085136 - MGP_CASTEiJ_P0038730 Txndc16 protein_coding protein_coding MGP_CASTEiJ_T0038731.1 MGP_CASTEiJ_G0020462.1 mouse_genomes_project 14 36028584 36033005 - Txndc16 protein_coding retained_intron MGP_CASTEiJ_T0038732.1 MGP_CASTEiJ_G0020462.1 mouse_genomes_project 14 36082696 36084197 - Txndc16 protein_coding processed_transcript MGP_CASTEiJ_T0039014.1 MGP_CASTEiJ_G0020552.1 mouse_genomes_project 14 43388349 43424636 - MGP_CASTEiJ_P0039014 Supt16 protein_coding protein_coding MGP_CASTEiJ_T0002527.1 MGP_CASTEiJ_G0002431.1 mouse_genomes_project 14 43931474 43932066 + MGP_CASTEiJ_P0002527 Trav7d-3 TR_V_gene TR_V_gene MGP_CASTEiJ_T0039587.1 MGP_CASTEiJ_G0020735.1 mouse_genomes_project 14 56430507 56475814 - MGP_CASTEiJ_P0039587 Extl3 protein_coding protein_coding MGP_CASTEiJ_T0101532.1 MGP_CASTEiJ_G0038421.1 mouse_genomes_project 14 45741179 45745662 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101533.1 MGP_CASTEiJ_G0038421.1 mouse_genomes_project 14 45744446 45745426 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0039870.1 MGP_CASTEiJ_G0020834.1 mouse_genomes_project 14 67561020 67562555 + Tpt1 protein_coding retained_intron MGP_CASTEiJ_T0039871.1 MGP_CASTEiJ_G0020834.1 mouse_genomes_project 14 67561021 67561659 + Tpt1 protein_coding retained_intron MGP_CASTEiJ_T0039872.1 MGP_CASTEiJ_G0020834.1 mouse_genomes_project 14 67561044 67562747 + Tpt1 protein_coding retained_intron MGP_CASTEiJ_T0039873.1 MGP_CASTEiJ_G0020834.1 mouse_genomes_project 14 67561118 67563971 + MGP_CASTEiJ_P0039873 Tpt1 protein_coding protein_coding MGP_CASTEiJ_T0039874.1 MGP_CASTEiJ_G0020834.1 mouse_genomes_project 14 67561589 67563963 + Tpt1 protein_coding processed_transcript MGP_CASTEiJ_T0039875.1 MGP_CASTEiJ_G0020834.1 mouse_genomes_project 14 67561891 67562650 + Tpt1 protein_coding retained_intron MGP_CASTEiJ_T0038636.1 MGP_CASTEiJ_G0020417.1 mouse_genomes_project 14 26617940 26734009 + MGP_CASTEiJ_P0038636 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0039096.1 MGP_CASTEiJ_G0020570.1 mouse_genomes_project 14 45078423 45081569 + MGP_CASTEiJ_P0039096 Mrpl52 protein_coding protein_coding MGP_CASTEiJ_T0039097.1 MGP_CASTEiJ_G0020570.1 mouse_genomes_project 14 45078436 45079290 + Mrpl52 protein_coding retained_intron MGP_CASTEiJ_T0039098.1 MGP_CASTEiJ_G0020570.1 mouse_genomes_project 14 45078437 45078950 + Mrpl52 protein_coding retained_intron MGP_CASTEiJ_T0039099.1 MGP_CASTEiJ_G0020570.1 mouse_genomes_project 14 45078486 45081562 + MGP_CASTEiJ_P0039099 Mrpl52 protein_coding protein_coding MGP_CASTEiJ_T0039100.1 MGP_CASTEiJ_G0020570.1 mouse_genomes_project 14 45078554 45081559 + Mrpl52 protein_coding retained_intron MGP_CASTEiJ_T0039101.1 MGP_CASTEiJ_G0020570.1 mouse_genomes_project 14 45078565 45081562 + MGP_CASTEiJ_P0039101 Mrpl52 protein_coding protein_coding MGP_CASTEiJ_T0039721.1 MGP_CASTEiJ_G0020788.1 mouse_genomes_project 14 61557251 61598040 + MGP_CASTEiJ_P0039721 Bin3 protein_coding protein_coding MGP_CASTEiJ_T0039035.1 MGP_CASTEiJ_G0020555.1 mouse_genomes_project 14 43507293 43529214 + MGP_CASTEiJ_P0039035 Tox4 protein_coding protein_coding MGP_CASTEiJ_T0039036.1 MGP_CASTEiJ_G0020555.1 mouse_genomes_project 14 43507712 43521156 + Tox4 protein_coding retained_intron MGP_CASTEiJ_T0039037.1 MGP_CASTEiJ_G0020555.1 mouse_genomes_project 14 43507764 43508301 + Tox4 protein_coding retained_intron MGP_CASTEiJ_T0039038.1 MGP_CASTEiJ_G0020555.1 mouse_genomes_project 14 43507879 43516938 + Tox4 protein_coding retained_intron MGP_CASTEiJ_T0039039.1 MGP_CASTEiJ_G0020555.1 mouse_genomes_project 14 43515324 43516561 + Tox4 protein_coding processed_transcript MGP_CASTEiJ_T0039904.1 MGP_CASTEiJ_G0020843.1 mouse_genomes_project 14 68991698 69598372 + MGP_CASTEiJ_P0039904 Enox1 protein_coding protein_coding MGP_CASTEiJ_T0039905.1 MGP_CASTEiJ_G0020843.1 mouse_genomes_project 14 69438604 69596458 + MGP_CASTEiJ_P0039905 Enox1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0102080.1 MGP_CASTEiJ_G0038805.1 mouse_genomes_project 14 42977991 42978441 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0039319.1 MGP_CASTEiJ_G0020622.1 mouse_genomes_project 14 46408035 46410672 - MGP_CASTEiJ_P0039319 Mdp1 protein_coding protein_coding MGP_CASTEiJ_T0038725.1 MGP_CASTEiJ_G0020459.1 mouse_genomes_project 14 34555945 34569001 - MGP_CASTEiJ_P0038725 Sftpd protein_coding protein_coding MGP_CASTEiJ_T0039102.1 MGP_CASTEiJ_G0020571.1 mouse_genomes_project 14 45083423 45092909 + MGP_CASTEiJ_P0039102 Mmp14 protein_coding protein_coding MGP_CASTEiJ_T0039103.1 MGP_CASTEiJ_G0020571.1 mouse_genomes_project 14 45083434 45088016 + MGP_CASTEiJ_P0039103 Mmp14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039104.1 MGP_CASTEiJ_G0020571.1 mouse_genomes_project 14 45083475 45087988 + Mmp14 protein_coding retained_intron MGP_CASTEiJ_T0039105.1 MGP_CASTEiJ_G0020571.1 mouse_genomes_project 14 45083529 45085078 + Mmp14 protein_coding retained_intron MGP_CASTEiJ_T0039106.1 MGP_CASTEiJ_G0020571.1 mouse_genomes_project 14 45083677 45094093 + MGP_CASTEiJ_P0039106 Mmp14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039107.1 MGP_CASTEiJ_G0020571.1 mouse_genomes_project 14 45084247 45087700 + MGP_CASTEiJ_P0039107 Mmp14 protein_coding protein_coding MGP_CASTEiJ_T0039687.1 MGP_CASTEiJ_G0020770.1 mouse_genomes_project 14 60155142 60175876 - MGP_CASTEiJ_P0039687 Adamdec1 protein_coding protein_coding MGP_CASTEiJ_T0002448.1 MGP_CASTEiJ_G0002359.1 mouse_genomes_project 14 44817762 44817817 + MGP_CASTEiJ_P0002448 Traj41 TR_J_gene TR_J_gene MGP_CASTEiJ_T0039122.1 MGP_CASTEiJ_G0020577.1 mouse_genomes_project 14 45248191 45271811 - MGP_CASTEiJ_P0039122 4931414P19Rik protein_coding protein_coding MGP_CASTEiJ_T0002557.1 MGP_CASTEiJ_G0002458.1 mouse_genomes_project 14 44210683 44211134 + MGP_CASTEiJ_P0002557 TR_V_gene TR_V_gene MGP_CASTEiJ_T0099417.1 MGP_CASTEiJ_G0036330.1 mouse_genomes_project 14 115433363 115433445 + Gm25781 snRNA snRNA MGP_CASTEiJ_T0039741.1 MGP_CASTEiJ_G0020794.1 mouse_genomes_project 14 61781332 61834837 - MGP_CASTEiJ_P0039741 Slc39a14 protein_coding protein_coding MGP_CASTEiJ_T0039742.1 MGP_CASTEiJ_G0020794.1 mouse_genomes_project 14 61787143 61831836 - MGP_CASTEiJ_P0039742 Slc39a14 protein_coding protein_coding MGP_CASTEiJ_T0039743.1 MGP_CASTEiJ_G0020794.1 mouse_genomes_project 14 61787157 61834837 - MGP_CASTEiJ_P0039743 Slc39a14 protein_coding protein_coding MGP_CASTEiJ_T0039744.1 MGP_CASTEiJ_G0020794.1 mouse_genomes_project 14 61789671 61792104 - Slc39a14 protein_coding retained_intron MGP_CASTEiJ_T0039745.1 MGP_CASTEiJ_G0020794.1 mouse_genomes_project 14 61791806 61794784 - Slc39a14 protein_coding retained_intron MGP_CASTEiJ_T0039746.1 MGP_CASTEiJ_G0020794.1 mouse_genomes_project 14 61794814 61834826 - Slc39a14 protein_coding retained_intron MGP_CASTEiJ_T0039747.1 MGP_CASTEiJ_G0020794.1 mouse_genomes_project 14 61795966 61831838 - Slc39a14 protein_coding retained_intron MGP_CASTEiJ_T0039748.1 MGP_CASTEiJ_G0020794.1 mouse_genomes_project 14 61796648 61817638 - MGP_CASTEiJ_P0039748 Slc39a14 protein_coding protein_coding MGP_CASTEiJ_T0039749.1 MGP_CASTEiJ_G0020794.1 mouse_genomes_project 14 61797321 61834806 - MGP_CASTEiJ_P0039749 Slc39a14 protein_coding protein_coding MGP_CASTEiJ_T0039750.1 MGP_CASTEiJ_G0020794.1 mouse_genomes_project 14 61797355 61806941 - MGP_CASTEiJ_P0039750 Slc39a14 protein_coding protein_coding MGP_CASTEiJ_T0039751.1 MGP_CASTEiJ_G0020794.1 mouse_genomes_project 14 61797416 61834827 - MGP_CASTEiJ_P0039751 Slc39a14 protein_coding protein_coding MGP_CASTEiJ_T0039752.1 MGP_CASTEiJ_G0020794.1 mouse_genomes_project 14 61799599 61814972 - MGP_CASTEiJ_P0039752 Slc39a14 protein_coding protein_coding MGP_CASTEiJ_T0039753.1 MGP_CASTEiJ_G0020794.1 mouse_genomes_project 14 61814530 61834837 - Slc39a14 protein_coding retained_intron MGP_CASTEiJ_T0002453.1 MGP_CASTEiJ_G0002364.1 mouse_genomes_project 14 44825279 44825341 + MGP_CASTEiJ_P0002453 Traj35 TR_J_gene TR_J_gene MGP_CASTEiJ_T0002522.1 MGP_CASTEiJ_G0002427.1 mouse_genomes_project 14 43871199 43871652 + MGP_CASTEiJ_P0002522 Trav6-2 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002523.1 MGP_CASTEiJ_G0002427.1 mouse_genomes_project 14 43871199 43871652 + MGP_CASTEiJ_P0002523 Trav6-2 TR_V_gene TR_V_gene MGP_CASTEiJ_T0038940.1 MGP_CASTEiJ_G0020541.1 mouse_genomes_project 14 43093445 43101631 + MGP_CASTEiJ_P0038940 Mettl17 protein_coding protein_coding MGP_CASTEiJ_T0038941.1 MGP_CASTEiJ_G0020541.1 mouse_genomes_project 14 43093479 43101623 + Mettl17 protein_coding retained_intron MGP_CASTEiJ_T0038942.1 MGP_CASTEiJ_G0020541.1 mouse_genomes_project 14 43093481 43099350 + MGP_CASTEiJ_P0038942 Mettl17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038943.1 MGP_CASTEiJ_G0020541.1 mouse_genomes_project 14 43093492 43101556 + Mettl17 protein_coding retained_intron MGP_CASTEiJ_T0038944.1 MGP_CASTEiJ_G0020541.1 mouse_genomes_project 14 43093492 43101556 + MGP_CASTEiJ_P0038944 Mettl17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038945.1 MGP_CASTEiJ_G0020541.1 mouse_genomes_project 14 43093492 43101556 + MGP_CASTEiJ_P0038945 Mettl17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038946.1 MGP_CASTEiJ_G0020541.1 mouse_genomes_project 14 43093515 43099068 + Mettl17 protein_coding retained_intron MGP_CASTEiJ_T0038947.1 MGP_CASTEiJ_G0020541.1 mouse_genomes_project 14 43093521 43094262 + Mettl17 protein_coding retained_intron MGP_CASTEiJ_T0038948.1 MGP_CASTEiJ_G0020541.1 mouse_genomes_project 14 43093538 43102638 + Mettl17 protein_coding retained_intron MGP_CASTEiJ_T0038949.1 MGP_CASTEiJ_G0020541.1 mouse_genomes_project 14 43093541 43098691 + Mettl17 protein_coding retained_intron MGP_CASTEiJ_T0038950.1 MGP_CASTEiJ_G0020541.1 mouse_genomes_project 14 43093549 43101498 + MGP_CASTEiJ_P0038950 Mettl17 protein_coding protein_coding MGP_CASTEiJ_T0038951.1 MGP_CASTEiJ_G0020541.1 mouse_genomes_project 14 43093549 43098691 + MGP_CASTEiJ_P0038951 Mettl17 protein_coding protein_coding MGP_CASTEiJ_T0038952.1 MGP_CASTEiJ_G0020541.1 mouse_genomes_project 14 43093555 43095869 + Mettl17 protein_coding retained_intron MGP_CASTEiJ_T0038953.1 MGP_CASTEiJ_G0020541.1 mouse_genomes_project 14 43093557 43094266 + Mettl17 protein_coding retained_intron MGP_CASTEiJ_T0038954.1 MGP_CASTEiJ_G0020541.1 mouse_genomes_project 14 43094005 43100489 + MGP_CASTEiJ_P0038954 Mettl17 protein_coding protein_coding MGP_CASTEiJ_T0038955.1 MGP_CASTEiJ_G0020541.1 mouse_genomes_project 14 43095775 43098779 + Mettl17 protein_coding retained_intron MGP_CASTEiJ_T0006518.1 MGP_CASTEiJ_G0005402.1 mouse_genomes_project 14 42008307 42015930 + Gm26782 lincRNA lincRNA MGP_CASTEiJ_T0006519.1 MGP_CASTEiJ_G0005402.1 mouse_genomes_project 14 42008319 42017603 + Gm26782 lincRNA lincRNA MGP_CASTEiJ_T0037990.1 MGP_CASTEiJ_G0020249.1 mouse_genomes_project 14 622425 636534 - MGP_CASTEiJ_P0037990 Fam107a protein_coding protein_coding MGP_CASTEiJ_T0037991.1 MGP_CASTEiJ_G0020249.1 mouse_genomes_project 14 622425 636532 - MGP_CASTEiJ_P0037991 Fam107a protein_coding protein_coding MGP_CASTEiJ_T0037992.1 MGP_CASTEiJ_G0020249.1 mouse_genomes_project 14 623727 644883 - MGP_CASTEiJ_P0037992 Fam107a protein_coding protein_coding MGP_CASTEiJ_T0037993.1 MGP_CASTEiJ_G0020249.1 mouse_genomes_project 14 625735 636550 - MGP_CASTEiJ_P0037993 Fam107a protein_coding protein_coding MGP_CASTEiJ_T0000886.1 MGP_CASTEiJ_G0000825.1 mouse_genomes_project 14 79669179 79669552 - TEC TEC MGP_CASTEiJ_T0039869.1 MGP_CASTEiJ_G0020833.1 mouse_genomes_project 14 67470934 67496863 - MGP_CASTEiJ_P0039869 Slc25a30 protein_coding protein_coding MGP_CASTEiJ_T0002624.1 MGP_CASTEiJ_G0002514.1 mouse_genomes_project 14 44252436 44252705 + TR_V_pseudogene TR_V_pseudogene MGP_CASTEiJ_T0006489.1 MGP_CASTEiJ_G0005382.1 mouse_genomes_project 14 17790495 17794521 + Gm10398 lincRNA lincRNA MGP_CASTEiJ_T0039604.1 MGP_CASTEiJ_G0020744.1 mouse_genomes_project 14 57242739 57257720 - MGP_CASTEiJ_P0039604 Esco2 protein_coding protein_coding MGP_CASTEiJ_T0039605.1 MGP_CASTEiJ_G0020744.1 mouse_genomes_project 14 57249701 57250898 - Esco2 protein_coding processed_transcript MGP_CASTEiJ_T0039606.1 MGP_CASTEiJ_G0020744.1 mouse_genomes_project 14 57250651 57252602 - Esco2 protein_coding processed_transcript MGP_CASTEiJ_T0038929.1 MGP_CASTEiJ_G0020533.1 mouse_genomes_project 14 42218390 42219522 - MGP_CASTEiJ_P0038929 Olfr750 protein_coding protein_coding MGP_CASTEiJ_T0039334.1 MGP_CASTEiJ_G0020629.1 mouse_genomes_project 14 46498779 46508569 + MGP_CASTEiJ_P0039334 Nop9 protein_coding protein_coding MGP_CASTEiJ_T0009751.1 MGP_CASTEiJ_G0007939.1 mouse_genomes_project 14 102005423 102005584 + Gm24818 miRNA miRNA MGP_CASTEiJ_T0100609.1 MGP_CASTEiJ_G0037522.1 mouse_genomes_project 14 30561936 30562069 + Gm22469 snoRNA snoRNA MGP_CASTEiJ_T0038877.1 MGP_CASTEiJ_G0020505.1 mouse_genomes_project 14 41409072 41410105 - MGP_CASTEiJ_P0038877 Olfr734 protein_coding protein_coding MGP_CASTEiJ_T0099373.1 MGP_CASTEiJ_G0036286.1 mouse_genomes_project 14 14575842 14575987 + Gm23502 snRNA snRNA MGP_CASTEiJ_T0039867.1 MGP_CASTEiJ_G0020831.1 mouse_genomes_project 14 67344743 67373156 + MGP_CASTEiJ_P0039867 Erich6b protein_coding protein_coding MGP_CASTEiJ_T0002563.1 MGP_CASTEiJ_G0002463.1 mouse_genomes_project 14 44276024 44276491 + MGP_CASTEiJ_P0002563 TR_V_gene TR_V_gene MGP_CASTEiJ_T0038618.1 MGP_CASTEiJ_G0020415.1 mouse_genomes_project 14 26356880 26514060 + MGP_CASTEiJ_P0038618 Arhgap22 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038619.1 MGP_CASTEiJ_G0020415.1 mouse_genomes_project 14 26356898 26359933 + Arhgap22 protein_coding processed_transcript MGP_CASTEiJ_T0038620.1 MGP_CASTEiJ_G0020415.1 mouse_genomes_project 14 26391666 26413846 + Arhgap22 protein_coding processed_transcript MGP_CASTEiJ_T0038621.1 MGP_CASTEiJ_G0020415.1 mouse_genomes_project 14 26447716 26514412 + Arhgap22 protein_coding processed_transcript MGP_CASTEiJ_T0038622.1 MGP_CASTEiJ_G0020415.1 mouse_genomes_project 14 26462372 26514414 + MGP_CASTEiJ_P0038622 Arhgap22 protein_coding protein_coding MGP_CASTEiJ_T0038623.1 MGP_CASTEiJ_G0020415.1 mouse_genomes_project 14 26462489 26674568 + MGP_CASTEiJ_P0038623 Arhgap22 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038624.1 MGP_CASTEiJ_G0020415.1 mouse_genomes_project 14 26495104 26507694 + Arhgap22 protein_coding processed_transcript MGP_CASTEiJ_T0038625.1 MGP_CASTEiJ_G0020415.1 mouse_genomes_project 14 26507415 26509606 + Arhgap22 protein_coding processed_transcript MGP_CASTEiJ_T0038626.1 MGP_CASTEiJ_G0020415.1 mouse_genomes_project 14 26507494 26508451 + Arhgap22 protein_coding processed_transcript MGP_CASTEiJ_T0039059.1 MGP_CASTEiJ_G0020559.1 mouse_genomes_project 14 43604779 43606655 - MGP_CASTEiJ_P0039059 protein_coding protein_coding MGP_CASTEiJ_T0003439.1 MGP_CASTEiJ_G0003135.1 mouse_genomes_project 14 46309732 46319654 - Gm15932 antisense antisense MGP_CASTEiJ_T0016676.1 MGP_CASTEiJ_G0014594.1 mouse_genomes_project 14 98904333 98912997 + 4930449E01Rik processed_transcript lincRNA MGP_CASTEiJ_T0016677.1 MGP_CASTEiJ_G0014594.1 mouse_genomes_project 14 98908219 98908579 + 4930449E01Rik processed_transcript TEC MGP_CASTEiJ_T0016678.1 MGP_CASTEiJ_G0014594.1 mouse_genomes_project 14 98910849 98913004 + 4930449E01Rik processed_transcript lincRNA MGP_CASTEiJ_T0098513.1 MGP_CASTEiJ_G0035444.1 mouse_genomes_project 14 103931888 103931999 + n-R5s50 rRNA rRNA MGP_CASTEiJ_T0100639.1 MGP_CASTEiJ_G0037552.1 mouse_genomes_project 14 89956458 89956550 + Gm24770 snoRNA snoRNA MGP_CASTEiJ_T0038132.1 MGP_CASTEiJ_G0020297.1 mouse_genomes_project 14 13157841 13172925 - MGP_CASTEiJ_P0038132 Mss51 protein_coding protein_coding MGP_CASTEiJ_T0002528.1 MGP_CASTEiJ_G0002432.1 mouse_genomes_project 14 43937531 43938011 + MGP_CASTEiJ_P0002528 Trav6d-4 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002529.1 MGP_CASTEiJ_G0002432.1 mouse_genomes_project 14 43937562 43938011 + MGP_CASTEiJ_P0002529 Trav6d-4 TR_V_gene TR_V_gene MGP_CASTEiJ_T0038290.1 MGP_CASTEiJ_G0020334.1 mouse_genomes_project 14 18884573 18903079 + protein_coding processed_transcript MGP_CASTEiJ_T0038294.1 MGP_CASTEiJ_G0020334.1 mouse_genomes_project 14 18890679 18904486 + MGP_CASTEiJ_P0038294 protein_coding protein_coding MGP_CASTEiJ_T0038296.1 MGP_CASTEiJ_G0020334.1 mouse_genomes_project 14 18899890 18903360 + protein_coding retained_intron MGP_CASTEiJ_T0038297.1 MGP_CASTEiJ_G0020334.1 mouse_genomes_project 14 18902795 18903276 + protein_coding retained_intron MGP_CASTEiJ_T0040015.1 MGP_CASTEiJ_G0020885.1 mouse_genomes_project 14 96290392 96296396 - MGP_CASTEiJ_P0040015 Kctd12 protein_coding protein_coding MGP_CASTEiJ_T0040016.1 MGP_CASTEiJ_G0020885.1 mouse_genomes_project 14 96291338 96295310 - Kctd12 protein_coding processed_transcript MGP_CASTEiJ_T0038935.1 MGP_CASTEiJ_G0020537.1 mouse_genomes_project 14 42293596 42295651 + MGP_CASTEiJ_P0038935 Rnase6 protein_coding protein_coding MGP_CASTEiJ_T0038766.1 MGP_CASTEiJ_G0020474.1 mouse_genomes_project 14 37728241 37742137 - MGP_CASTEiJ_P0038766 Gmfb protein_coding protein_coding MGP_CASTEiJ_T0038767.1 MGP_CASTEiJ_G0020474.1 mouse_genomes_project 14 37728241 37742137 - MGP_CASTEiJ_P0038767 Gmfb protein_coding protein_coding MGP_CASTEiJ_T0038768.1 MGP_CASTEiJ_G0020474.1 mouse_genomes_project 14 37734362 37739689 - MGP_CASTEiJ_P0038768 Gmfb protein_coding protein_coding MGP_CASTEiJ_T0039231.1 MGP_CASTEiJ_G0020609.1 mouse_genomes_project 14 46280192 46289870 + MGP_CASTEiJ_P0039231 Pck2 protein_coding protein_coding MGP_CASTEiJ_T0039353.1 MGP_CASTEiJ_G0020640.1 mouse_genomes_project 14 46707941 46711831 - MGP_CASTEiJ_P0039353 Cma1 protein_coding protein_coding MGP_CASTEiJ_T0012623.1 MGP_CASTEiJ_G0010786.1 mouse_genomes_project 14 36618183 36618376 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099416.1 MGP_CASTEiJ_G0036329.1 mouse_genomes_project 14 113091909 113092009 + Gm23302 snRNA snRNA MGP_CASTEiJ_T0039500.1 MGP_CASTEiJ_G0020699.1 mouse_genomes_project 14 52502203 52581336 - MGP_CASTEiJ_P0039500 Kpna3 protein_coding protein_coding MGP_CASTEiJ_T0039501.1 MGP_CASTEiJ_G0020699.1 mouse_genomes_project 14 52529089 52580784 - MGP_CASTEiJ_P0039501 Kpna3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0038291.1 MGP_CASTEiJ_G0020335.1 mouse_genomes_project 14 18889897 18903096 + protein_coding processed_transcript MGP_CASTEiJ_T0038292.1 MGP_CASTEiJ_G0020335.1 mouse_genomes_project 14 18890632 18904499 + MGP_CASTEiJ_P0038292 protein_coding protein_coding MGP_CASTEiJ_T0012657.1 MGP_CASTEiJ_G0010820.1 mouse_genomes_project 14 66392994 66406820 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0002429.1 MGP_CASTEiJ_G0002344.1 mouse_genomes_project 14 44797722 44797784 + MGP_CASTEiJ_P0002429 Traj59 TR_J_gene TR_J_gene MGP_CASTEiJ_T0002430.1 MGP_CASTEiJ_G0002344.1 mouse_genomes_project 14 44797722 44797786 + Traj59 TR_J_gene processed_transcript MGP_CASTEiJ_T0100634.1 MGP_CASTEiJ_G0037547.1 mouse_genomes_project 14 83840001 83840115 - Gm23225 snoRNA snoRNA MGP_CASTEiJ_T0038347.1 MGP_CASTEiJ_G0020348.1 mouse_genomes_project 14 19731433 19741159 + MGP_CASTEiJ_P0038347 Hesx1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0098502.1 MGP_CASTEiJ_G0035433.1 mouse_genomes_project 14 4851112 4851222 - n-R5s45 rRNA rRNA MGP_CASTEiJ_T0037996.1 MGP_CASTEiJ_G0020252.1 mouse_genomes_project 14 1903369 2799496 - MGP_CASTEiJ_P0037996 Fhit protein_coding protein_coding MGP_CASTEiJ_T0037997.1 MGP_CASTEiJ_G0020252.1 mouse_genomes_project 14 1903377 3519063 - MGP_CASTEiJ_P0037997 Fhit protein_coding protein_coding MGP_CASTEiJ_T0037998.1 MGP_CASTEiJ_G0020252.1 mouse_genomes_project 14 1903377 3519060 - MGP_CASTEiJ_P0037998 Fhit protein_coding protein_coding MGP_CASTEiJ_T0037999.1 MGP_CASTEiJ_G0020252.1 mouse_genomes_project 14 1903670 2765099 - MGP_CASTEiJ_P0037999 Fhit protein_coding protein_coding MGP_CASTEiJ_T0038000.1 MGP_CASTEiJ_G0020252.1 mouse_genomes_project 14 1927872 3481651 - MGP_CASTEiJ_P0038000 Fhit protein_coding protein_coding MGP_CASTEiJ_T0038001.1 MGP_CASTEiJ_G0020252.1 mouse_genomes_project 14 2121083 3481236 - Fhit protein_coding retained_intron MGP_CASTEiJ_T0038002.1 MGP_CASTEiJ_G0020252.1 mouse_genomes_project 14 2121190 3481622 - MGP_CASTEiJ_P0038002 Fhit protein_coding protein_coding MGP_CASTEiJ_T0038003.1 MGP_CASTEiJ_G0020252.1 mouse_genomes_project 14 2219552 3519063 - MGP_CASTEiJ_P0038003 Fhit protein_coding protein_coding MGP_CASTEiJ_T0038740.1 MGP_CASTEiJ_G0020467.1 mouse_genomes_project 14 36254928 36267376 - MGP_CASTEiJ_P0038740 Gnpnat1 protein_coding protein_coding MGP_CASTEiJ_T0039707.1 MGP_CASTEiJ_G0020781.1 mouse_genomes_project 14 61010574 61106060 + MGP_CASTEiJ_P0039707 Loxl2 protein_coding protein_coding MGP_CASTEiJ_T0039708.1 MGP_CASTEiJ_G0020781.1 mouse_genomes_project 14 61010983 61104119 + MGP_CASTEiJ_P0039708 Loxl2 protein_coding protein_coding MGP_CASTEiJ_T0038463.1 MGP_CASTEiJ_G0020379.1 mouse_genomes_project 14 24141092 24149624 + MGP_CASTEiJ_P0038463 Nt5dc2 protein_coding protein_coding MGP_CASTEiJ_T0038113.1 MGP_CASTEiJ_G0020291.1 mouse_genomes_project 14 12995763 13023927 - MGP_CASTEiJ_P0038113 Ecd protein_coding protein_coding MGP_CASTEiJ_T0038005.1 MGP_CASTEiJ_G0020254.1 mouse_genomes_project 14 3938253 4677312 + MGP_CASTEiJ_P0038005 Ptprg protein_coding protein_coding MGP_CASTEiJ_T0038006.1 MGP_CASTEiJ_G0020254.1 mouse_genomes_project 14 3938274 4673848 + MGP_CASTEiJ_P0038006 Ptprg protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038007.1 MGP_CASTEiJ_G0020254.1 mouse_genomes_project 14 3938302 4376333 + Ptprg protein_coding retained_intron MGP_CASTEiJ_T0038008.1 MGP_CASTEiJ_G0020254.1 mouse_genomes_project 14 4513958 4545343 + MGP_CASTEiJ_P0038008 Ptprg protein_coding protein_coding MGP_CASTEiJ_T0038009.1 MGP_CASTEiJ_G0020254.1 mouse_genomes_project 14 4561315 4673304 + MGP_CASTEiJ_P0038009 Ptprg protein_coding unknown_likely_coding MGP_CASTEiJ_T0038010.1 MGP_CASTEiJ_G0020254.1 mouse_genomes_project 14 4618204 4673847 + MGP_CASTEiJ_P0038010 Ptprg protein_coding protein_coding MGP_CASTEiJ_T0038011.1 MGP_CASTEiJ_G0020254.1 mouse_genomes_project 14 4648290 4654127 + Ptprg protein_coding processed_transcript MGP_CASTEiJ_T0002531.1 MGP_CASTEiJ_G0002434.1 mouse_genomes_project 14 44070112 44070752 + MGP_CASTEiJ_P0002531 TR_V_gene TR_V_gene MGP_CASTEiJ_T0038596.1 MGP_CASTEiJ_G0020406.1 mouse_genomes_project 14 25550879 25553295 - MGP_CASTEiJ_P0038596 Slc18a3 protein_coding protein_coding MGP_CASTEiJ_T0002562.1 MGP_CASTEiJ_G0002462.1 mouse_genomes_project 14 44275970 44276491 + MGP_CASTEiJ_P0002562 TR_V_gene TR_V_gene MGP_CASTEiJ_T0012668.1 MGP_CASTEiJ_G0010831.1 mouse_genomes_project 14 92545316 92545656 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039574.1 MGP_CASTEiJ_G0020732.1 mouse_genomes_project 14 56018360 56177987 + MGP_CASTEiJ_P0039574 Kif13b protein_coding protein_coding MGP_CASTEiJ_T0039575.1 MGP_CASTEiJ_G0020732.1 mouse_genomes_project 14 56018431 56181309 + MGP_CASTEiJ_P0039575 Kif13b protein_coding unknown_likely_coding MGP_CASTEiJ_T0039515.1 MGP_CASTEiJ_G0020706.1 mouse_genomes_project 14 53775319 53810288 + Fam124a protein_coding processed_transcript MGP_CASTEiJ_T0039516.1 MGP_CASTEiJ_G0020706.1 mouse_genomes_project 14 53775319 53831737 + Fam124a protein_coding processed_transcript MGP_CASTEiJ_T0039517.1 MGP_CASTEiJ_G0020706.1 mouse_genomes_project 14 53775319 53834187 + MGP_CASTEiJ_P0039517 Fam124a protein_coding protein_coding MGP_CASTEiJ_T0039518.1 MGP_CASTEiJ_G0020706.1 mouse_genomes_project 14 53775357 53784558 + Fam124a protein_coding processed_transcript MGP_CASTEiJ_T0039519.1 MGP_CASTEiJ_G0020706.1 mouse_genomes_project 14 53775364 53878763 + MGP_CASTEiJ_P0039519 Fam124a protein_coding unknown_likely_coding MGP_CASTEiJ_T0039835.1 MGP_CASTEiJ_G0020821.1 mouse_genomes_project 14 66285911 66360677 + MGP_CASTEiJ_P0039835 Htr2a protein_coding protein_coding MGP_CASTEiJ_T0039836.1 MGP_CASTEiJ_G0020821.1 mouse_genomes_project 14 66290074 66361789 + MGP_CASTEiJ_P0039836 Htr2a protein_coding unknown_likely_coding MGP_CASTEiJ_T0038897.1 MGP_CASTEiJ_G0020520.1 mouse_genomes_project 14 41916638 41923053 - MGP_CASTEiJ_P0038897 Ccnb1ip1 protein_coding protein_coding MGP_CASTEiJ_T0038546.1 MGP_CASTEiJ_G0020396.1 mouse_genomes_project 14 25156222 25161244 - MGP_CASTEiJ_P0038546 Dph3 protein_coding protein_coding MGP_CASTEiJ_T0038547.1 MGP_CASTEiJ_G0020396.1 mouse_genomes_project 14 25156225 25161244 - MGP_CASTEiJ_P0038547 Dph3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038548.1 MGP_CASTEiJ_G0020396.1 mouse_genomes_project 14 25156225 25161244 - MGP_CASTEiJ_P0038548 Dph3 protein_coding protein_coding MGP_CASTEiJ_T0038549.1 MGP_CASTEiJ_G0020396.1 mouse_genomes_project 14 25158395 25161244 - MGP_CASTEiJ_P0038549 Dph3 protein_coding protein_coding MGP_CASTEiJ_T0038550.1 MGP_CASTEiJ_G0020396.1 mouse_genomes_project 14 25158509 25161327 - Dph3 protein_coding processed_transcript MGP_CASTEiJ_T0038551.1 MGP_CASTEiJ_G0020396.1 mouse_genomes_project 14 25158513 25160921 - Dph3 protein_coding retained_intron MGP_CASTEiJ_T0038552.1 MGP_CASTEiJ_G0020396.1 mouse_genomes_project 14 25160331 25161244 - MGP_CASTEiJ_P0038552 Dph3 protein_coding protein_coding MGP_CASTEiJ_T0000875.1 MGP_CASTEiJ_G0000814.1 mouse_genomes_project 14 45794018 45795057 - TEC TEC MGP_CASTEiJ_T0100631.1 MGP_CASTEiJ_G0037544.1 mouse_genomes_project 14 79836702 79836845 + Gm23278 snoRNA snoRNA MGP_CASTEiJ_T0039079.1 MGP_CASTEiJ_G0020566.1 mouse_genomes_project 14 44901123 44915955 + MGP_CASTEiJ_P0039079 Abhd4 protein_coding protein_coding MGP_CASTEiJ_T0039080.1 MGP_CASTEiJ_G0020566.1 mouse_genomes_project 14 44906176 44914737 + MGP_CASTEiJ_P0039080 Abhd4 protein_coding protein_coding MGP_CASTEiJ_T0039081.1 MGP_CASTEiJ_G0020566.1 mouse_genomes_project 14 44906191 44910081 + Abhd4 protein_coding retained_intron MGP_CASTEiJ_T0039082.1 MGP_CASTEiJ_G0020566.1 mouse_genomes_project 14 44906197 44910240 + MGP_CASTEiJ_P0039082 Abhd4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039083.1 MGP_CASTEiJ_G0020566.1 mouse_genomes_project 14 44906225 44910243 + MGP_CASTEiJ_P0039083 Abhd4 protein_coding protein_coding MGP_CASTEiJ_T0039084.1 MGP_CASTEiJ_G0020566.1 mouse_genomes_project 14 44909895 44917508 + MGP_CASTEiJ_P0039084 Abhd4 protein_coding protein_coding MGP_CASTEiJ_T0039085.1 MGP_CASTEiJ_G0020566.1 mouse_genomes_project 14 44910200 44914734 + MGP_CASTEiJ_P0039085 Abhd4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0002568.1 MGP_CASTEiJ_G0002468.1 mouse_genomes_project 14 44291995 44292586 + MGP_CASTEiJ_P0002568 TR_V_gene TR_V_gene MGP_CASTEiJ_T0016684.1 MGP_CASTEiJ_G0014598.1 mouse_genomes_project 14 113672439 113690527 + Gm16835 processed_transcript processed_transcript MGP_CASTEiJ_T0038441.1 MGP_CASTEiJ_G0020376.1 mouse_genomes_project 14 24017984 24024623 - MGP_CASTEiJ_P0038441 Gnl3 protein_coding protein_coding MGP_CASTEiJ_T0099380.1 MGP_CASTEiJ_G0036293.1 mouse_genomes_project 14 39765229 39765336 - Gm25380 snRNA snRNA MGP_CASTEiJ_T0038721.1 MGP_CASTEiJ_G0020456.1 mouse_genomes_project 14 34486028 34505005 + MGP_CASTEiJ_P0038721 Mat1a protein_coding protein_coding MGP_CASTEiJ_T0038039.1 MGP_CASTEiJ_G0020267.1 mouse_genomes_project 14 6915201 6916298 + MGP_CASTEiJ_P0038039 Olfr721-ps1 protein_coding protein_coding MGP_CASTEiJ_T0038040.1 MGP_CASTEiJ_G0020267.1 mouse_genomes_project 14 6915323 6916298 + MGP_CASTEiJ_P0038040 Olfr721-ps1 protein_coding protein_coding MGP_CASTEiJ_T0037979.1 MGP_CASTEiJ_G0020246.1 mouse_genomes_project 14 491100 500963 - MGP_CASTEiJ_P0037979 Pdhb protein_coding protein_coding MGP_CASTEiJ_T0012641.1 MGP_CASTEiJ_G0010804.1 mouse_genomes_project 14 47658322 47681010 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009744.1 MGP_CASTEiJ_G0007932.1 mouse_genomes_project 14 70101047 70101153 - Mir1971 miRNA miRNA MGP_CASTEiJ_T0039125.1 MGP_CASTEiJ_G0020580.1 mouse_genomes_project 14 45299987 45314082 - MGP_CASTEiJ_P0039125 Cdh24 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099410.1 MGP_CASTEiJ_G0036323.1 mouse_genomes_project 14 98654367 98654474 + Gm22290 snRNA snRNA MGP_CASTEiJ_T0003400.1 MGP_CASTEiJ_G0003106.1 mouse_genomes_project 14 6469505 6499349 + Gm11100 antisense antisense MGP_CASTEiJ_T0003401.1 MGP_CASTEiJ_G0003106.1 mouse_genomes_project 14 6493134 6499349 + Gm11100 antisense antisense MGP_CASTEiJ_T0038660.1 MGP_CASTEiJ_G0020433.1 mouse_genomes_project 14 27573744 27578226 - MGP_CASTEiJ_P0038660 Sncg protein_coding protein_coding MGP_CASTEiJ_T0100612.1 MGP_CASTEiJ_G0037525.1 mouse_genomes_project 14 43437255 43437365 - Snord8 snoRNA snoRNA MGP_CASTEiJ_T0011035.1 MGP_CASTEiJ_G0009223.1 mouse_genomes_project 14 13995551 13995810 + Gm26372 misc_RNA misc_RNA MGP_CASTEiJ_T0038874.1 MGP_CASTEiJ_G0020502.1 mouse_genomes_project 14 41322495 41323476 - MGP_CASTEiJ_P0038874 Olfr731 protein_coding protein_coding MGP_CASTEiJ_T0040062.1 MGP_CASTEiJ_G0020902.1 mouse_genomes_project 14 105900893 105910336 + MGP_CASTEiJ_P0040062 Slitrk5 protein_coding protein_coding MGP_CASTEiJ_T0002431.1 MGP_CASTEiJ_G0002345.1 mouse_genomes_project 14 44798849 44798912 + MGP_CASTEiJ_P0002431 Traj58 TR_J_gene TR_J_gene MGP_CASTEiJ_T0039590.1 MGP_CASTEiJ_G0020737.1 mouse_genomes_project 14 56643393 56694377 + MGP_CASTEiJ_P0039590 Fbxo16 protein_coding protein_coding MGP_CASTEiJ_T0039591.1 MGP_CASTEiJ_G0020737.1 mouse_genomes_project 14 56647422 56696866 + MGP_CASTEiJ_P0039591 Fbxo16 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003428.1 MGP_CASTEiJ_G0003126.1 mouse_genomes_project 14 38035719 38056072 - Gm10371 antisense antisense MGP_CASTEiJ_T0039622.1 MGP_CASTEiJ_G0020751.1 mouse_genomes_project 14 57583144 57599253 + MGP_CASTEiJ_P0039622 Chrna2 protein_coding protein_coding MGP_CASTEiJ_T0039623.1 MGP_CASTEiJ_G0020751.1 mouse_genomes_project 14 57589026 57601034 + MGP_CASTEiJ_P0039623 Chrna2 protein_coding protein_coding MGP_CASTEiJ_T0038348.1 MGP_CASTEiJ_G0020349.1 mouse_genomes_project 14 19779040 19857820 + MGP_CASTEiJ_P0038348 Il17rd protein_coding protein_coding MGP_CASTEiJ_T0039286.1 MGP_CASTEiJ_G0020618.1 mouse_genomes_project 14 46361714 46370758 + MGP_CASTEiJ_P0039286 Rec8 protein_coding protein_coding MGP_CASTEiJ_T0039287.1 MGP_CASTEiJ_G0020618.1 mouse_genomes_project 14 46361860 46362491 + Rec8 protein_coding retained_intron MGP_CASTEiJ_T0039288.1 MGP_CASTEiJ_G0020618.1 mouse_genomes_project 14 46368932 46369874 + Rec8 protein_coding retained_intron MGP_CASTEiJ_T0039289.1 MGP_CASTEiJ_G0020618.1 mouse_genomes_project 14 46370281 46370758 + Rec8 protein_coding retained_intron MGP_CASTEiJ_T0009735.1 MGP_CASTEiJ_G0007923.1 mouse_genomes_project 14 55943650 55943735 + Mir124a-1 miRNA miRNA MGP_CASTEiJ_T0002470.1 MGP_CASTEiJ_G0002381.1 mouse_genomes_project 14 44842940 44843006 + MGP_CASTEiJ_P0002470 Traj18 TR_J_gene TR_J_gene MGP_CASTEiJ_T0038956.1 MGP_CASTEiJ_G0020542.1 mouse_genomes_project 14 43102629 43106826 + Slc39a2 protein_coding retained_intron MGP_CASTEiJ_T0038957.1 MGP_CASTEiJ_G0020542.1 mouse_genomes_project 14 43104632 43107770 + MGP_CASTEiJ_P0038957 Slc39a2 protein_coding protein_coding MGP_CASTEiJ_T0038958.1 MGP_CASTEiJ_G0020542.1 mouse_genomes_project 14 43104678 43106819 + MGP_CASTEiJ_P0038958 Slc39a2 protein_coding protein_coding MGP_CASTEiJ_T0003474.1 MGP_CASTEiJ_G0003159.1 mouse_genomes_project 14 118739266 118740676 + Gm28932 antisense antisense MGP_CASTEiJ_T0039430.1 MGP_CASTEiJ_G0020676.1 mouse_genomes_project 14 48894729 48981950 - MGP_CASTEiJ_P0039430 Micu2 protein_coding protein_coding MGP_CASTEiJ_T0038207.1 MGP_CASTEiJ_G0020316.1 mouse_genomes_project 14 14596219 14606326 + MGP_CASTEiJ_P0038207 Vdac2 protein_coding protein_coding MGP_CASTEiJ_T0038208.1 MGP_CASTEiJ_G0020316.1 mouse_genomes_project 14 14596260 14611778 + MGP_CASTEiJ_P0038208 Vdac2 protein_coding protein_coding MGP_CASTEiJ_T0038209.1 MGP_CASTEiJ_G0020316.1 mouse_genomes_project 14 14596674 14602541 + MGP_CASTEiJ_P0038209 Vdac2 protein_coding protein_coding MGP_CASTEiJ_T0038210.1 MGP_CASTEiJ_G0020316.1 mouse_genomes_project 14 14598573 14602735 + Vdac2 protein_coding processed_transcript MGP_CASTEiJ_T0038211.1 MGP_CASTEiJ_G0020316.1 mouse_genomes_project 14 14602457 14606434 + Vdac2 protein_coding retained_intron MGP_CASTEiJ_T0038212.1 MGP_CASTEiJ_G0020316.1 mouse_genomes_project 14 14602554 14603590 + Vdac2 protein_coding retained_intron MGP_CASTEiJ_T0038213.1 MGP_CASTEiJ_G0020316.1 mouse_genomes_project 14 14608160 14611417 + Vdac2 protein_coding retained_intron MGP_CASTEiJ_T0039357.1 MGP_CASTEiJ_G0020644.1 mouse_genomes_project 14 46867342 46870383 - MGP_CASTEiJ_P0039357 Cma2 protein_coding protein_coding MGP_CASTEiJ_T0039358.1 MGP_CASTEiJ_G0020644.1 mouse_genomes_project 14 46867512 46870933 - MGP_CASTEiJ_P0039358 Cma2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039359.1 MGP_CASTEiJ_G0020644.1 mouse_genomes_project 14 46867512 46870970 - MGP_CASTEiJ_P0039359 Cma2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0039346.1 MGP_CASTEiJ_G0020636.1 mouse_genomes_project 14 46602353 46624319 + MGP_CASTEiJ_P0039346 Nynrin protein_coding protein_coding MGP_CASTEiJ_T0039347.1 MGP_CASTEiJ_G0020636.1 mouse_genomes_project 14 46602432 46624763 + MGP_CASTEiJ_P0039347 Nynrin protein_coding protein_coding MGP_CASTEiJ_T0038683.1 MGP_CASTEiJ_G0020442.1 mouse_genomes_project 14 29367565 29383091 + MGP_CASTEiJ_P0038683 4930474N05Rik protein_coding protein_coding MGP_CASTEiJ_T0038684.1 MGP_CASTEiJ_G0020442.1 mouse_genomes_project 14 29367615 29386352 + MGP_CASTEiJ_P0038684 4930474N05Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039167.1 MGP_CASTEiJ_G0020590.1 mouse_genomes_project 14 45576618 45592500 + MGP_CASTEiJ_P0039167 Gm20521 protein_coding protein_coding MGP_CASTEiJ_T0039862.1 MGP_CASTEiJ_G0020829.1 mouse_genomes_project 14 67142109 67219691 + MGP_CASTEiJ_P0039862 Siah3 protein_coding protein_coding MGP_CASTEiJ_T0039526.1 MGP_CASTEiJ_G0020711.1 mouse_genomes_project 14 54258180 54261120 + MGP_CASTEiJ_P0039526 Defb47 protein_coding protein_coding MGP_CASTEiJ_T0038285.1 MGP_CASTEiJ_G0020333.1 mouse_genomes_project 14 18869644 18873040 - MGP_CASTEiJ_P0038285 protein_coding protein_coding MGP_CASTEiJ_T0038286.1 MGP_CASTEiJ_G0020333.1 mouse_genomes_project 14 18869648 18872646 - MGP_CASTEiJ_P0038286 protein_coding protein_coding MGP_CASTEiJ_T0040121.1 MGP_CASTEiJ_G0020925.1 mouse_genomes_project 14 116709305 116722067 - MGP_CASTEiJ_P0040121 Gpr183 protein_coding protein_coding MGP_CASTEiJ_T0101529.1 MGP_CASTEiJ_G0038419.1 mouse_genomes_project 14 23339984 23340435 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0098505.1 MGP_CASTEiJ_G0035436.1 mouse_genomes_project 14 54120280 54120399 + n-R5s47 rRNA rRNA MGP_CASTEiJ_T0039595.1 MGP_CASTEiJ_G0020740.1 mouse_genomes_project 14 56914167 56979289 - MGP_CASTEiJ_P0039595 Elp3 protein_coding protein_coding MGP_CASTEiJ_T0009760.1 MGP_CASTEiJ_G0007948.1 mouse_genomes_project 14 113099228 113099332 - Mir6391 miRNA miRNA MGP_CASTEiJ_T0006477.1 MGP_CASTEiJ_G0005374.1 mouse_genomes_project 14 5627596 5762144 - lincRNA lincRNA MGP_CASTEiJ_T0006478.1 MGP_CASTEiJ_G0005374.1 mouse_genomes_project 14 5738613 5762136 - lincRNA lincRNA MGP_CASTEiJ_T0039716.1 MGP_CASTEiJ_G0020783.1 mouse_genomes_project 14 61130776 61148004 - MGP_CASTEiJ_P0039716 Chmp7 protein_coding protein_coding MGP_CASTEiJ_T0039554.1 MGP_CASTEiJ_G0020722.1 mouse_genomes_project 14 54820697 54846594 - MGP_CASTEiJ_P0039554 Mtmr9 protein_coding protein_coding MGP_CASTEiJ_T0039464.1 MGP_CASTEiJ_G0020686.1 mouse_genomes_project 14 50767245 51295502 - MGP_CASTEiJ_P0039464 Atp8a2 protein_coding protein_coding MGP_CASTEiJ_T0039465.1 MGP_CASTEiJ_G0020686.1 mouse_genomes_project 14 51146934 51205818 - MGP_CASTEiJ_P0039465 Atp8a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0039466.1 MGP_CASTEiJ_G0020686.1 mouse_genomes_project 14 51158777 51316592 - MGP_CASTEiJ_P0039466 Atp8a2 protein_coding protein_coding MGP_CASTEiJ_T0039467.1 MGP_CASTEiJ_G0020686.1 mouse_genomes_project 14 51205517 51295654 - MGP_CASTEiJ_P0039467 Atp8a2 protein_coding protein_coding MGP_CASTEiJ_T0039468.1 MGP_CASTEiJ_G0020686.1 mouse_genomes_project 14 51205576 51206604 - MGP_CASTEiJ_P0039468 Atp8a2 protein_coding protein_coding MGP_CASTEiJ_T0039471.1 MGP_CASTEiJ_G0020686.1 mouse_genomes_project 14 51305483 51316556 - Atp8a2 protein_coding processed_transcript MGP_CASTEiJ_T0039350.1 MGP_CASTEiJ_G0020638.1 mouse_genomes_project 14 46643487 46655294 + MGP_CASTEiJ_P0039350 Khnyn protein_coding protein_coding MGP_CASTEiJ_T0039699.1 MGP_CASTEiJ_G0020779.1 mouse_genomes_project 14 60954459 60985981 + MGP_CASTEiJ_P0039699 protein_coding protein_coding MGP_CASTEiJ_T0039700.1 MGP_CASTEiJ_G0020779.1 mouse_genomes_project 14 60954475 60969126 + protein_coding retained_intron MGP_CASTEiJ_T0039701.1 MGP_CASTEiJ_G0020779.1 mouse_genomes_project 14 60954483 60969127 + MGP_CASTEiJ_P0039701 protein_coding protein_coding MGP_CASTEiJ_T0039702.1 MGP_CASTEiJ_G0020779.1 mouse_genomes_project 14 60954501 60964690 + protein_coding processed_transcript MGP_CASTEiJ_T0039704.1 MGP_CASTEiJ_G0020779.1 mouse_genomes_project 14 60981263 60984927 + protein_coding retained_intron MGP_CASTEiJ_T0012610.1 MGP_CASTEiJ_G0010773.1 mouse_genomes_project 14 18885624 18886823 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0039983.1 MGP_CASTEiJ_G0020879.1 mouse_genomes_project 14 94441253 94443625 - MGP_CASTEiJ_P0039983 Prr30 protein_coding protein_coding MGP_CASTEiJ_T0039984.1 MGP_CASTEiJ_G0020879.1 mouse_genomes_project 14 94441261 94443886 - MGP_CASTEiJ_P0039984 Prr30 protein_coding protein_coding MGP_CASTEiJ_T0000888.1 MGP_CASTEiJ_G0000827.1 mouse_genomes_project 14 85233511 85233881 + TEC TEC MGP_CASTEiJ_T0011042.1 MGP_CASTEiJ_G0009230.1 mouse_genomes_project 14 44763107 44763446 + Gm23704 misc_RNA misc_RNA MGP_CASTEiJ_T0098503.1 MGP_CASTEiJ_G0035434.1 mouse_genomes_project 14 21870844 21870948 - Gm23999 rRNA rRNA MGP_CASTEiJ_T0002461.1 MGP_CASTEiJ_G0002372.1 mouse_genomes_project 14 44834684 44834743 + MGP_CASTEiJ_P0002461 Traj27 TR_J_gene TR_J_gene MGP_CASTEiJ_T0038567.1 MGP_CASTEiJ_G0020399.1 mouse_genomes_project 14 25237029 25257003 + MGP_CASTEiJ_P0038567 protein_coding protein_coding MGP_CASTEiJ_T0038568.1 MGP_CASTEiJ_G0020399.1 mouse_genomes_project 14 25237102 25253393 + MGP_CASTEiJ_P0038568 protein_coding protein_coding MGP_CASTEiJ_T0038570.1 MGP_CASTEiJ_G0020399.1 mouse_genomes_project 14 25237145 25253278 + MGP_CASTEiJ_P0038570 protein_coding protein_coding MGP_CASTEiJ_T0038571.1 MGP_CASTEiJ_G0020399.1 mouse_genomes_project 14 25242752 25257003 + MGP_CASTEiJ_P0038571 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0038572.1 MGP_CASTEiJ_G0020399.1 mouse_genomes_project 14 25242954 25256394 + MGP_CASTEiJ_P0038572 protein_coding protein_coding MGP_CASTEiJ_T0038573.1 MGP_CASTEiJ_G0020399.1 mouse_genomes_project 14 25242955 25249853 + MGP_CASTEiJ_P0038573 protein_coding protein_coding MGP_CASTEiJ_T0038574.1 MGP_CASTEiJ_G0020399.1 mouse_genomes_project 14 25242955 25249557 + MGP_CASTEiJ_P0038574 protein_coding protein_coding MGP_CASTEiJ_T0038575.1 MGP_CASTEiJ_G0020399.1 mouse_genomes_project 14 25243280 25249780 + MGP_CASTEiJ_P0038575 protein_coding protein_coding MGP_CASTEiJ_T0038704.1 MGP_CASTEiJ_G0020450.1 mouse_genomes_project 14 31715317 32853926 - MGP_CASTEiJ_P0038704 Nrg3 protein_coding protein_coding MGP_CASTEiJ_T0038705.1 MGP_CASTEiJ_G0020450.1 mouse_genomes_project 14 31716844 32853663 - MGP_CASTEiJ_P0038705 Nrg3 protein_coding protein_coding MGP_CASTEiJ_T0038706.1 MGP_CASTEiJ_G0020450.1 mouse_genomes_project 14 31716860 32853665 - MGP_CASTEiJ_P0038706 Nrg3 protein_coding protein_coding MGP_CASTEiJ_T0038707.1 MGP_CASTEiJ_G0020450.1 mouse_genomes_project 14 32364552 32853504 - Nrg3 protein_coding retained_intron MGP_CASTEiJ_T0038685.1 MGP_CASTEiJ_G0020443.1 mouse_genomes_project 14 30195716 30308072 - MGP_CASTEiJ_P0038685 Ccser2 protein_coding protein_coding MGP_CASTEiJ_T0038686.1 MGP_CASTEiJ_G0020443.1 mouse_genomes_project 14 30195716 30307982 - MGP_CASTEiJ_P0038686 Ccser2 protein_coding protein_coding MGP_CASTEiJ_T0038687.1 MGP_CASTEiJ_G0020443.1 mouse_genomes_project 14 30199618 30239755 - Ccser2 protein_coding processed_transcript MGP_CASTEiJ_T0038688.1 MGP_CASTEiJ_G0020443.1 mouse_genomes_project 14 30199619 30270146 - MGP_CASTEiJ_P0038688 Ccser2 protein_coding protein_coding MGP_CASTEiJ_T0038689.1 MGP_CASTEiJ_G0020443.1 mouse_genomes_project 14 30199874 30242506 - MGP_CASTEiJ_P0038689 Ccser2 protein_coding protein_coding MGP_CASTEiJ_T0038690.1 MGP_CASTEiJ_G0020443.1 mouse_genomes_project 14 30199921 30253861 - MGP_CASTEiJ_P0038690 Ccser2 protein_coding protein_coding MGP_CASTEiJ_T0038691.1 MGP_CASTEiJ_G0020443.1 mouse_genomes_project 14 30200137 30254063 - MGP_CASTEiJ_P0038691 Ccser2 protein_coding protein_coding MGP_CASTEiJ_T0038692.1 MGP_CASTEiJ_G0020443.1 mouse_genomes_project 14 30200296 30261422 - MGP_CASTEiJ_P0038692 Ccser2 protein_coding protein_coding MGP_CASTEiJ_T0038693.1 MGP_CASTEiJ_G0020443.1 mouse_genomes_project 14 30200348 30207090 - Ccser2 protein_coding retained_intron MGP_CASTEiJ_T0038694.1 MGP_CASTEiJ_G0020443.1 mouse_genomes_project 14 30234289 30274523 - Ccser2 protein_coding processed_transcript MGP_CASTEiJ_T0100606.1 MGP_CASTEiJ_G0037519.1 mouse_genomes_project 14 26350039 26350168 + Gm25498 snoRNA snoRNA MGP_CASTEiJ_T0100645.1 MGP_CASTEiJ_G0037558.1 mouse_genomes_project 14 95634654 95634785 - Gm22347 snoRNA snoRNA MGP_CASTEiJ_T0039685.1 MGP_CASTEiJ_G0020769.1 mouse_genomes_project 14 60088028 60129185 - MGP_CASTEiJ_P0039685 Adam7 protein_coding protein_coding MGP_CASTEiJ_T0039686.1 MGP_CASTEiJ_G0020769.1 mouse_genomes_project 14 60088529 60101244 - Adam7 protein_coding retained_intron MGP_CASTEiJ_T0006548.1 MGP_CASTEiJ_G0005424.1 mouse_genomes_project 14 68303667 68309857 - 4930444M15Rik lincRNA lincRNA MGP_CASTEiJ_T0038171.1 MGP_CASTEiJ_G0020311.1 mouse_genomes_project 14 13769380 14192064 + MGP_CASTEiJ_P0038171 Adk protein_coding protein_coding MGP_CASTEiJ_T0038172.1 MGP_CASTEiJ_G0020311.1 mouse_genomes_project 14 13795566 14191434 + MGP_CASTEiJ_P0038172 Adk protein_coding unknown_likely_coding MGP_CASTEiJ_T0039761.1 MGP_CASTEiJ_G0020800.1 mouse_genomes_project 14 62021145 62030061 + MGP_CASTEiJ_P0039761 Lgi3 protein_coding protein_coding MGP_CASTEiJ_T0040144.1 MGP_CASTEiJ_G0020934.1 mouse_genomes_project 14 117597717 117695698 - MGP_CASTEiJ_P0040144 Ggact protein_coding protein_coding MGP_CASTEiJ_T0040147.1 MGP_CASTEiJ_G0020934.1 mouse_genomes_project 14 117673463 117695740 - MGP_CASTEiJ_P0040147 Ggact protein_coding protein_coding MGP_CASTEiJ_T0040148.1 MGP_CASTEiJ_G0020934.1 mouse_genomes_project 14 117673474 117674308 - MGP_CASTEiJ_P0040148 Ggact protein_coding protein_coding MGP_CASTEiJ_T0040149.1 MGP_CASTEiJ_G0020934.1 mouse_genomes_project 14 117674037 117696335 - MGP_CASTEiJ_P0040149 Ggact protein_coding protein_coding MGP_CASTEiJ_T0040150.1 MGP_CASTEiJ_G0020934.1 mouse_genomes_project 14 117674086 117695663 - MGP_CASTEiJ_P0040150 Ggact protein_coding protein_coding MGP_CASTEiJ_T0012624.1 MGP_CASTEiJ_G0010787.1 mouse_genomes_project 14 36757822 36758287 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006542.1 MGP_CASTEiJ_G0005419.1 mouse_genomes_project 14 60945276 60954368 - Gm27174 lincRNA lincRNA MGP_CASTEiJ_T0038642.1 MGP_CASTEiJ_G0020423.1 mouse_genomes_project 14 27216754 27222619 + MGP_CASTEiJ_P0038642 Gm5460 protein_coding protein_coding MGP_CASTEiJ_T0038278.1 MGP_CASTEiJ_G0020331.1 mouse_genomes_project 14 18833775 18848997 - MGP_CASTEiJ_P0038278 protein_coding protein_coding MGP_CASTEiJ_T0038279.1 MGP_CASTEiJ_G0020331.1 mouse_genomes_project 14 18834158 18836665 - MGP_CASTEiJ_P0038279 protein_coding protein_coding MGP_CASTEiJ_T0038280.1 MGP_CASTEiJ_G0020331.1 mouse_genomes_project 14 18834158 18848366 - MGP_CASTEiJ_P0038280 protein_coding protein_coding MGP_CASTEiJ_T0038282.1 MGP_CASTEiJ_G0020331.1 mouse_genomes_project 14 18834202 18848368 - MGP_CASTEiJ_P0038282 protein_coding protein_coding MGP_CASTEiJ_T0039576.1 MGP_CASTEiJ_G0020733.1 mouse_genomes_project 14 56183330 56320135 - MGP_CASTEiJ_P0039576 Hmbox1 protein_coding protein_coding MGP_CASTEiJ_T0039577.1 MGP_CASTEiJ_G0020733.1 mouse_genomes_project 14 56186357 56194169 - Hmbox1 protein_coding processed_transcript MGP_CASTEiJ_T0039578.1 MGP_CASTEiJ_G0020733.1 mouse_genomes_project 14 56194090 56320132 - MGP_CASTEiJ_P0039578 Hmbox1 protein_coding protein_coding MGP_CASTEiJ_T0039579.1 MGP_CASTEiJ_G0020733.1 mouse_genomes_project 14 56194090 56320156 - MGP_CASTEiJ_P0039579 Hmbox1 protein_coding protein_coding MGP_CASTEiJ_T0039580.1 MGP_CASTEiJ_G0020733.1 mouse_genomes_project 14 56194680 56319917 - MGP_CASTEiJ_P0039580 Hmbox1 protein_coding protein_coding MGP_CASTEiJ_T0039581.1 MGP_CASTEiJ_G0020733.1 mouse_genomes_project 14 56195035 56277714 - MGP_CASTEiJ_P0039581 Hmbox1 protein_coding protein_coding MGP_CASTEiJ_T0039582.1 MGP_CASTEiJ_G0020733.1 mouse_genomes_project 14 56196924 56320141 - MGP_CASTEiJ_P0039582 Hmbox1 protein_coding protein_coding MGP_CASTEiJ_T0039583.1 MGP_CASTEiJ_G0020733.1 mouse_genomes_project 14 56197171 56320132 - MGP_CASTEiJ_P0039583 Hmbox1 protein_coding protein_coding MGP_CASTEiJ_T0039584.1 MGP_CASTEiJ_G0020733.1 mouse_genomes_project 14 56197204 56320132 - MGP_CASTEiJ_P0039584 Hmbox1 protein_coding protein_coding MGP_CASTEiJ_T0039585.1 MGP_CASTEiJ_G0020733.1 mouse_genomes_project 14 56258086 56320132 - Hmbox1 protein_coding retained_intron MGP_CASTEiJ_T0039219.1 MGP_CASTEiJ_G0020606.1 mouse_genomes_project 14 46227697 46244817 + MGP_CASTEiJ_P0039219 Lrrc16b protein_coding protein_coding MGP_CASTEiJ_T0039220.1 MGP_CASTEiJ_G0020606.1 mouse_genomes_project 14 46227845 46244842 + MGP_CASTEiJ_P0039220 Lrrc16b protein_coding unknown_likely_coding MGP_CASTEiJ_T0011036.1 MGP_CASTEiJ_G0009224.1 mouse_genomes_project 14 24580300 24580602 - Gm24057 misc_RNA misc_RNA MGP_CASTEiJ_T0038276.1 MGP_CASTEiJ_G0020329.1 mouse_genomes_project 14 18833269 18848842 - MGP_CASTEiJ_P0038276 protein_coding protein_coding MGP_CASTEiJ_T0038283.1 MGP_CASTEiJ_G0020329.1 mouse_genomes_project 14 18834650 18848805 - MGP_CASTEiJ_P0038283 protein_coding protein_coding MGP_CASTEiJ_T0039624.1 MGP_CASTEiJ_G0020752.1 mouse_genomes_project 14 57601342 57733666 - MGP_CASTEiJ_P0039624 Ptk2b protein_coding protein_coding MGP_CASTEiJ_T0039625.1 MGP_CASTEiJ_G0020752.1 mouse_genomes_project 14 57601343 57666124 - MGP_CASTEiJ_P0039625 Ptk2b protein_coding protein_coding MGP_CASTEiJ_T0039626.1 MGP_CASTEiJ_G0020752.1 mouse_genomes_project 14 57601347 57623070 - MGP_CASTEiJ_P0039626 Ptk2b protein_coding protein_coding MGP_CASTEiJ_T0039627.1 MGP_CASTEiJ_G0020752.1 mouse_genomes_project 14 57601347 57733666 - MGP_CASTEiJ_P0039627 Ptk2b protein_coding protein_coding MGP_CASTEiJ_T0039628.1 MGP_CASTEiJ_G0020752.1 mouse_genomes_project 14 57601352 57610343 - Ptk2b protein_coding retained_intron MGP_CASTEiJ_T0039629.1 MGP_CASTEiJ_G0020752.1 mouse_genomes_project 14 57601929 57733596 - MGP_CASTEiJ_P0039629 Ptk2b protein_coding protein_coding MGP_CASTEiJ_T0039630.1 MGP_CASTEiJ_G0020752.1 mouse_genomes_project 14 57602057 57670494 - MGP_CASTEiJ_P0039630 Ptk2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0039631.1 MGP_CASTEiJ_G0020752.1 mouse_genomes_project 14 57604352 57613573 - Ptk2b protein_coding retained_intron MGP_CASTEiJ_T0039632.1 MGP_CASTEiJ_G0020752.1 mouse_genomes_project 14 57625607 57733606 - Ptk2b protein_coding retained_intron MGP_CASTEiJ_T0003424.1 MGP_CASTEiJ_G0003122.1 mouse_genomes_project 14 32247747 32314408 + Nrg3os antisense antisense MGP_CASTEiJ_T0002517.1 MGP_CASTEiJ_G0002423.1 mouse_genomes_project 14 43797174 43798028 + MGP_CASTEiJ_P0002517 Trav2 TR_V_gene TR_V_gene MGP_CASTEiJ_T0002518.1 MGP_CASTEiJ_G0002423.1 mouse_genomes_project 14 43797269 43798028 + MGP_CASTEiJ_P0002518 Trav2 TR_V_gene TR_V_gene MGP_CASTEiJ_T0009733.1 MGP_CASTEiJ_G0007921.1 mouse_genomes_project 14 54109956 54110066 + Mir6541 miRNA miRNA MGP_CASTEiJ_T0099418.1 MGP_CASTEiJ_G0036331.1 mouse_genomes_project 14 117174400 117174507 - Gm25464 snRNA snRNA MGP_CASTEiJ_T0038608.1 MGP_CASTEiJ_G0020414.1 mouse_genomes_project 14 26115564 26140383 + MGP_CASTEiJ_P0038608 Lrrc18 protein_coding protein_coding MGP_CASTEiJ_T0038609.1 MGP_CASTEiJ_G0020414.1 mouse_genomes_project 14 26115580 26134483 + MGP_CASTEiJ_P0038609 Lrrc18 protein_coding protein_coding MGP_CASTEiJ_T0038610.1 MGP_CASTEiJ_G0020414.1 mouse_genomes_project 14 26115585 26133765 + MGP_CASTEiJ_P0038610 Lrrc18 protein_coding protein_coding MGP_CASTEiJ_T0038611.1 MGP_CASTEiJ_G0020414.1 mouse_genomes_project 14 26115628 26133926 + MGP_CASTEiJ_P0038611 Lrrc18 protein_coding protein_coding MGP_CASTEiJ_T0038612.1 MGP_CASTEiJ_G0020414.1 mouse_genomes_project 14 26115640 26139247 + MGP_CASTEiJ_P0038612 Lrrc18 protein_coding protein_coding MGP_CASTEiJ_T0038613.1 MGP_CASTEiJ_G0020414.1 mouse_genomes_project 14 26119479 26133546 + Lrrc18 protein_coding processed_transcript MGP_CASTEiJ_T0100627.1 MGP_CASTEiJ_G0037540.1 mouse_genomes_project 14 67563570 67563700 + Snora31 snoRNA snoRNA MGP_CASTEiJ_T0009755.1 MGP_CASTEiJ_G0007943.1 mouse_genomes_project 14 109386147 109386254 + Mir20a miRNA miRNA MGP_CASTEiJ_T0039977.1 MGP_CASTEiJ_G0020873.1 mouse_genomes_project 14 92163735 92175864 - MGP_CASTEiJ_P0039977 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0002482.1 MGP_CASTEiJ_G0002393.1 mouse_genomes_project 14 44859518 44859584 + MGP_CASTEiJ_P0002482 Traj3 TR_J_gene TR_J_gene MGP_CASTEiJ_T0012660.1 MGP_CASTEiJ_G0010823.1 mouse_genomes_project 14 72313754 72314507 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040035.1 MGP_CASTEiJ_G0020891.1 mouse_genomes_project 14 96983117 97042648 + MGP_CASTEiJ_P0040035 Slain1 protein_coding protein_coding MGP_CASTEiJ_T0040036.1 MGP_CASTEiJ_G0020891.1 mouse_genomes_project 14 96983124 97039806 + MGP_CASTEiJ_P0040036 Slain1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040037.1 MGP_CASTEiJ_G0020891.1 mouse_genomes_project 14 96983535 97042051 + MGP_CASTEiJ_P0040037 Slain1 protein_coding protein_coding MGP_CASTEiJ_T0040038.1 MGP_CASTEiJ_G0020891.1 mouse_genomes_project 14 96988596 97027980 + MGP_CASTEiJ_P0040038 Slain1 protein_coding protein_coding MGP_CASTEiJ_T0040039.1 MGP_CASTEiJ_G0020891.1 mouse_genomes_project 14 96998545 97042543 + MGP_CASTEiJ_P0040039 Slain1 protein_coding protein_coding MGP_CASTEiJ_T0006505.1 MGP_CASTEiJ_G0005392.1 mouse_genomes_project 14 33010802 33035942 + 1700109I08Rik lincRNA lincRNA MGP_CASTEiJ_T0038769.1 MGP_CASTEiJ_G0020475.1 mouse_genomes_project 14 37756464 37779642 + MGP_CASTEiJ_P0038769 Cgrrf1 protein_coding protein_coding MGP_CASTEiJ_T0038770.1 MGP_CASTEiJ_G0020475.1 mouse_genomes_project 14 37756549 37764676 + Cgrrf1 protein_coding retained_intron MGP_CASTEiJ_T0038771.1 MGP_CASTEiJ_G0020475.1 mouse_genomes_project 14 37756559 37772054 + Cgrrf1 protein_coding retained_intron MGP_CASTEiJ_T0038772.1 MGP_CASTEiJ_G0020475.1 mouse_genomes_project 14 37756574 37773524 + Cgrrf1 protein_coding retained_intron MGP_CASTEiJ_T0039909.1 MGP_CASTEiJ_G0020846.1 mouse_genomes_project 14 69795390 69900388 + MGP_CASTEiJ_P0039909 Epsti1 protein_coding protein_coding MGP_CASTEiJ_T0039910.1 MGP_CASTEiJ_G0020846.1 mouse_genomes_project 14 69795558 69858872 + MGP_CASTEiJ_P0039910 Epsti1 protein_coding protein_coding MGP_CASTEiJ_T0006479.1 MGP_CASTEiJ_G0005375.1 mouse_genomes_project 14 7997328 8012110 + B230110C06Rik lincRNA lincRNA MGP_CASTEiJ_T0006480.1 MGP_CASTEiJ_G0005375.1 mouse_genomes_project 14 7997889 8011572 + B230110C06Rik lincRNA lincRNA MGP_CASTEiJ_T0039330.1 MGP_CASTEiJ_G0020628.1 mouse_genomes_project 14 46492060 46498686 - Dhrs1 protein_coding retained_intron MGP_CASTEiJ_T0039331.1 MGP_CASTEiJ_G0020628.1 mouse_genomes_project 14 46492060 46492701 - Dhrs1 protein_coding retained_intron MGP_CASTEiJ_T0039332.1 MGP_CASTEiJ_G0020628.1 mouse_genomes_project 14 46492062 46498777 - MGP_CASTEiJ_P0039332 Dhrs1 protein_coding protein_coding MGP_CASTEiJ_T0039333.1 MGP_CASTEiJ_G0020628.1 mouse_genomes_project 14 46492274 46493185 - Dhrs1 protein_coding retained_intron MGP_CASTEiJ_T0039692.1 MGP_CASTEiJ_G0020774.1 mouse_genomes_project 14 60801855 60805883 + MGP_CASTEiJ_P0039692 Nkx3-1 protein_coding protein_coding MGP_CASTEiJ_T0038875.1 MGP_CASTEiJ_G0020503.1 mouse_genomes_project 14 41364163 41365207 - MGP_CASTEiJ_P0038875 Olfr732 protein_coding protein_coding MGP_CASTEiJ_T0038277.1 MGP_CASTEiJ_G0020330.1 mouse_genomes_project 14 18833686 18848997 - MGP_CASTEiJ_P0038277 protein_coding protein_coding MGP_CASTEiJ_T0038281.1 MGP_CASTEiJ_G0020330.1 mouse_genomes_project 14 18834159 18848368 - MGP_CASTEiJ_P0038281 protein_coding protein_coding MGP_CASTEiJ_T0100610.1 MGP_CASTEiJ_G0037523.1 mouse_genomes_project 14 30770818 30770949 - Gm23909 snoRNA snoRNA MGP_CASTEiJ_T0099413.1 MGP_CASTEiJ_G0036326.1 mouse_genomes_project 14 104201820 104201927 - Gm23242 snRNA snRNA MGP_CASTEiJ_T0009745.1 MGP_CASTEiJ_G0007933.1 mouse_genomes_project 14 71713532 71713630 + Mir759 miRNA miRNA MGP_CASTEiJ_T0000881.1 MGP_CASTEiJ_G0000820.1 mouse_genomes_project 14 60820939 60825589 - TEC TEC MGP_CASTEiJ_T0038627.1 MGP_CASTEiJ_G0020416.1 mouse_genomes_project 14 26522551 26593003 - MGP_CASTEiJ_P0038627 Mapk8 protein_coding protein_coding MGP_CASTEiJ_T0038628.1 MGP_CASTEiJ_G0020416.1 mouse_genomes_project 14 26527468 26592990 - MGP_CASTEiJ_P0038628 Mapk8 protein_coding protein_coding MGP_CASTEiJ_T0038629.1 MGP_CASTEiJ_G0020416.1 mouse_genomes_project 14 26528524 26592987 - MGP_CASTEiJ_P0038629 Mapk8 protein_coding protein_coding MGP_CASTEiJ_T0038630.1 MGP_CASTEiJ_G0020416.1 mouse_genomes_project 14 26528589 26556885 - MGP_CASTEiJ_P0038630 Mapk8 protein_coding protein_coding MGP_CASTEiJ_T0038631.1 MGP_CASTEiJ_G0020416.1 mouse_genomes_project 14 26528724 26537165 - Mapk8 protein_coding processed_transcript MGP_CASTEiJ_T0038632.1 MGP_CASTEiJ_G0020416.1 mouse_genomes_project 14 26528727 26556868 - MGP_CASTEiJ_P0038632 Mapk8 protein_coding protein_coding MGP_CASTEiJ_T0038633.1 MGP_CASTEiJ_G0020416.1 mouse_genomes_project 14 26530760 26536085 - Mapk8 protein_coding retained_intron MGP_CASTEiJ_T0038634.1 MGP_CASTEiJ_G0020416.1 mouse_genomes_project 14 26537794 26593003 - Mapk8 protein_coding retained_intron MGP_CASTEiJ_T0038635.1 MGP_CASTEiJ_G0020416.1 mouse_genomes_project 14 26552814 26593002 - Mapk8 protein_coding retained_intron MGP_CASTEiJ_T0039876.1 MGP_CASTEiJ_G0020835.1 mouse_genomes_project 14 67626986 67752321 - MGP_CASTEiJ_P0039876 Gtf2f2 protein_coding protein_coding MGP_CASTEiJ_T0012437.1 MGP_CASTEiJ_G0010600.1 mouse_genomes_project 12 11011210 11012202 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035184.1 MGP_CASTEiJ_G0019275.1 mouse_genomes_project 12 82587389 82605077 - MGP_CASTEiJ_P0035184 Noxred1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033973.1 MGP_CASTEiJ_G0018863.1 mouse_genomes_project 12 795151 795548 + MGP_CASTEiJ_P0033973 Gm17728 protein_coding protein_coding MGP_CASTEiJ_T0034671.1 MGP_CASTEiJ_G0019110.1 mouse_genomes_project 12 65505916 65518135 + MGP_CASTEiJ_P0034671 Tomm20l protein_coding protein_coding MGP_CASTEiJ_T0009619.1 MGP_CASTEiJ_G0007807.1 mouse_genomes_project 12 106189954 106190022 + Mir376a miRNA miRNA MGP_CASTEiJ_T0034266.1 MGP_CASTEiJ_G0018967.1 mouse_genomes_project 12 24552237 24566796 - MGP_CASTEiJ_P0034266 Dus4l protein_coding protein_coding MGP_CASTEiJ_T0034575.1 MGP_CASTEiJ_G0019078.1 mouse_genomes_project 12 60467935 60468961 - MGP_CASTEiJ_P0034575 Rpl10l protein_coding protein_coding MGP_CASTEiJ_T0000817.1 MGP_CASTEiJ_G0000757.1 mouse_genomes_project 12 18278836 18318254 - TEC TEC MGP_CASTEiJ_T0034420.1 MGP_CASTEiJ_G0019020.1 mouse_genomes_project 12 45210646 45223075 + MGP_CASTEiJ_P0034420 Coch protein_coding protein_coding MGP_CASTEiJ_T0034421.1 MGP_CASTEiJ_G0019020.1 mouse_genomes_project 12 45210646 45223075 + MGP_CASTEiJ_P0034421 Coch protein_coding protein_coding MGP_CASTEiJ_T0034422.1 MGP_CASTEiJ_G0019020.1 mouse_genomes_project 12 45210877 45274054 + MGP_CASTEiJ_P0034422 Coch protein_coding unknown_likely_coding MGP_CASTEiJ_T0033957.1 MGP_CASTEiJ_G0018862.1 mouse_genomes_project 12 656561 692961 + Dnmt3a protein_coding retained_intron MGP_CASTEiJ_T0033958.1 MGP_CASTEiJ_G0018862.1 mouse_genomes_project 12 657057 722446 + Dnmt3a protein_coding retained_intron MGP_CASTEiJ_T0033959.1 MGP_CASTEiJ_G0018862.1 mouse_genomes_project 12 657085 729539 + MGP_CASTEiJ_P0033959 Dnmt3a protein_coding protein_coding MGP_CASTEiJ_T0033960.1 MGP_CASTEiJ_G0018862.1 mouse_genomes_project 12 657616 753007 + MGP_CASTEiJ_P0033960 Dnmt3a protein_coding protein_coding MGP_CASTEiJ_T0033961.1 MGP_CASTEiJ_G0018862.1 mouse_genomes_project 12 689377 766364 + MGP_CASTEiJ_P0033961 Dnmt3a protein_coding protein_coding MGP_CASTEiJ_T0033962.1 MGP_CASTEiJ_G0018862.1 mouse_genomes_project 12 703251 766504 + MGP_CASTEiJ_P0033962 Dnmt3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033963.1 MGP_CASTEiJ_G0018862.1 mouse_genomes_project 12 714649 719739 + MGP_CASTEiJ_P0033963 Dnmt3a protein_coding protein_coding MGP_CASTEiJ_T0033964.1 MGP_CASTEiJ_G0018862.1 mouse_genomes_project 12 719767 732172 + MGP_CASTEiJ_P0033964 Dnmt3a protein_coding protein_coding MGP_CASTEiJ_T0033965.1 MGP_CASTEiJ_G0018862.1 mouse_genomes_project 12 741508 752133 + MGP_CASTEiJ_P0033965 Dnmt3a protein_coding protein_coding MGP_CASTEiJ_T0033966.1 MGP_CASTEiJ_G0018862.1 mouse_genomes_project 12 747815 766459 + MGP_CASTEiJ_P0033966 Dnmt3a protein_coding protein_coding MGP_CASTEiJ_T0033967.1 MGP_CASTEiJ_G0018862.1 mouse_genomes_project 12 750875 751688 + MGP_CASTEiJ_P0033967 Dnmt3a protein_coding protein_coding MGP_CASTEiJ_T0033968.1 MGP_CASTEiJ_G0018862.1 mouse_genomes_project 12 750880 752988 + MGP_CASTEiJ_P0033968 Dnmt3a protein_coding protein_coding MGP_CASTEiJ_T0033969.1 MGP_CASTEiJ_G0018862.1 mouse_genomes_project 12 751604 753377 + MGP_CASTEiJ_P0033969 Dnmt3a protein_coding protein_coding MGP_CASTEiJ_T0033970.1 MGP_CASTEiJ_G0018862.1 mouse_genomes_project 12 753431 756997 + Dnmt3a protein_coding retained_intron MGP_CASTEiJ_T0033971.1 MGP_CASTEiJ_G0018862.1 mouse_genomes_project 12 757592 765407 + MGP_CASTEiJ_P0033971 Dnmt3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033972.1 MGP_CASTEiJ_G0018862.1 mouse_genomes_project 12 765430 767162 + MGP_CASTEiJ_P0033972 Dnmt3a protein_coding protein_coding MGP_CASTEiJ_T0006224.1 MGP_CASTEiJ_G0005200.1 mouse_genomes_project 12 2330539 2373809 + 2810032G03Rik lincRNA lincRNA MGP_CASTEiJ_T0006225.1 MGP_CASTEiJ_G0005200.1 mouse_genomes_project 12 2369088 2374143 + 2810032G03Rik lincRNA lincRNA MGP_CASTEiJ_T0100533.1 MGP_CASTEiJ_G0037446.1 mouse_genomes_project 12 106107181 106107253 + DQ267100 snoRNA snoRNA MGP_CASTEiJ_T0016552.1 MGP_CASTEiJ_G0014541.1 mouse_genomes_project 12 26120797 26157292 - F730043M19Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016553.1 MGP_CASTEiJ_G0014541.1 mouse_genomes_project 12 26136026 26156614 - F730043M19Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016554.1 MGP_CASTEiJ_G0014541.1 mouse_genomes_project 12 26143009 26157292 - F730043M19Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016555.1 MGP_CASTEiJ_G0014541.1 mouse_genomes_project 12 26144599 26157303 - F730043M19Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016556.1 MGP_CASTEiJ_G0014541.1 mouse_genomes_project 12 26145333 26149529 - F730043M19Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016557.1 MGP_CASTEiJ_G0014541.1 mouse_genomes_project 12 26156850 26157302 - F730043M19Rik processed_transcript processed_transcript MGP_CASTEiJ_T0098483.1 MGP_CASTEiJ_G0035414.1 mouse_genomes_project 12 62936135 62936253 + n-R5s61 rRNA rRNA MGP_CASTEiJ_T0035789.1 MGP_CASTEiJ_G0019466.1 mouse_genomes_project 12 112599410 112894752 + Ptprn2 protein_coding processed_transcript MGP_CASTEiJ_T0035790.1 MGP_CASTEiJ_G0019466.1 mouse_genomes_project 12 112599419 113245565 + Ptprn2 protein_coding processed_transcript MGP_CASTEiJ_T0035791.1 MGP_CASTEiJ_G0019466.1 mouse_genomes_project 12 112599419 113402004 + MGP_CASTEiJ_P0035791 Ptprn2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035792.1 MGP_CASTEiJ_G0019466.1 mouse_genomes_project 12 112599460 112969030 + Ptprn2 protein_coding retained_intron MGP_CASTEiJ_T0035793.1 MGP_CASTEiJ_G0019466.1 mouse_genomes_project 12 112599523 113401982 + MGP_CASTEiJ_P0035793 Ptprn2 protein_coding protein_coding MGP_CASTEiJ_T0000127.1 MGP_CASTEiJ_G0000096.1 mouse_genomes_project 12 112030941 112070743 - MGP_CASTEiJ_P0000127 Ighv1-82 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000110.1 MGP_CASTEiJ_G0000085.1 mouse_genomes_project 12 111488956 111489388 + MGP_CASTEiJ_P0000110 Ighv1-42 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000111.1 MGP_CASTEiJ_G0000085.1 mouse_genomes_project 12 111489094 111489388 + MGP_CASTEiJ_P0000111 Ighv1-42 IG_V_gene IG_V_gene MGP_CASTEiJ_T0012456.1 MGP_CASTEiJ_G0010619.1 mouse_genomes_project 12 55323919 55324892 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012462.1 MGP_CASTEiJ_G0010625.1 mouse_genomes_project 12 68527030 68527336 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034758.1 MGP_CASTEiJ_G0019141.1 mouse_genomes_project 12 70032760 70037806 - MGP_CASTEiJ_P0034758 Gphb5 protein_coding protein_coding MGP_CASTEiJ_T0000130.1 MGP_CASTEiJ_G0000098.1 mouse_genomes_project 12 112070274 112070727 - MGP_CASTEiJ_P0000130 IG_V_gene IG_V_gene MGP_CASTEiJ_T0100536.1 MGP_CASTEiJ_G0037449.1 mouse_genomes_project 12 106117965 106118037 + Gm26922 snoRNA snoRNA MGP_CASTEiJ_T0035485.1 MGP_CASTEiJ_G0019366.1 mouse_genomes_project 12 100972608 101065297 - MGP_CASTEiJ_P0035485 Syne3 protein_coding protein_coding MGP_CASTEiJ_T0012474.1 MGP_CASTEiJ_G0010637.1 mouse_genomes_project 12 82418399 82418514 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034725.1 MGP_CASTEiJ_G0019128.1 mouse_genomes_project 12 67603185 67617558 - MGP_CASTEiJ_P0034725 Six4 protein_coding protein_coding MGP_CASTEiJ_T0034726.1 MGP_CASTEiJ_G0019128.1 mouse_genomes_project 12 67607519 67617589 - MGP_CASTEiJ_P0034726 Six4 protein_coding protein_coding MGP_CASTEiJ_T0035689.1 MGP_CASTEiJ_G0019429.1 mouse_genomes_project 12 108499876 108505437 - MGP_CASTEiJ_P0035689 2010107E04Rik protein_coding protein_coding MGP_CASTEiJ_T0100499.1 MGP_CASTEiJ_G0037412.1 mouse_genomes_project 12 34799707 34799839 - Gm25497 snoRNA snoRNA MGP_CASTEiJ_T0000254.1 MGP_CASTEiJ_G0000203.1 mouse_genomes_project 12 111760397 111760694 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0009614.1 MGP_CASTEiJ_G0007802.1 mouse_genomes_project 12 106186202 106186294 + Mir667 miRNA miRNA MGP_CASTEiJ_T0034425.1 MGP_CASTEiJ_G0019022.1 mouse_genomes_project 12 45317631 45370407 + MGP_CASTEiJ_P0034425 Ap4s1 protein_coding protein_coding MGP_CASTEiJ_T0011010.1 MGP_CASTEiJ_G0009198.1 mouse_genomes_project 12 106056663 106056761 + Gm27350 misc_RNA misc_RNA MGP_CASTEiJ_T0000075.1 MGP_CASTEiJ_G0000061.1 mouse_genomes_project 12 110843252 110843719 - MGP_CASTEiJ_P0000075 IG_V_gene IG_V_gene MGP_CASTEiJ_T0035112.1 MGP_CASTEiJ_G0019255.1 mouse_genomes_project 12 80803964 80849446 + MGP_CASTEiJ_P0035112 Jdp2 protein_coding protein_coding MGP_CASTEiJ_T0035113.1 MGP_CASTEiJ_G0019255.1 mouse_genomes_project 12 80804275 80849445 + MGP_CASTEiJ_P0035113 Jdp2 protein_coding protein_coding MGP_CASTEiJ_T0035114.1 MGP_CASTEiJ_G0019255.1 mouse_genomes_project 12 80804876 80849446 + MGP_CASTEiJ_P0035114 Jdp2 protein_coding protein_coding MGP_CASTEiJ_T0006338.1 MGP_CASTEiJ_G0005277.1 mouse_genomes_project 12 109547489 109551656 - Gm26583 lincRNA lincRNA MGP_CASTEiJ_T0034419.1 MGP_CASTEiJ_G0019019.1 mouse_genomes_project 12 44982452 45057574 + MGP_CASTEiJ_P0034419 Scfd1 protein_coding protein_coding MGP_CASTEiJ_T0035267.1 MGP_CASTEiJ_G0019292.1 mouse_genomes_project 12 94021764 94081094 - MGP_CASTEiJ_P0035267 Galc protein_coding protein_coding MGP_CASTEiJ_T0035268.1 MGP_CASTEiJ_G0019292.1 mouse_genomes_project 12 94023404 94080916 - MGP_CASTEiJ_P0035268 Galc protein_coding unknown_likely_coding MGP_CASTEiJ_T0035560.1 MGP_CASTEiJ_G0019392.1 mouse_genomes_project 12 105217001 105242837 + MGP_CASTEiJ_P0035560 Yy1 protein_coding protein_coding MGP_CASTEiJ_T0035561.1 MGP_CASTEiJ_G0019392.1 mouse_genomes_project 12 105217242 105241943 + MGP_CASTEiJ_P0035561 Yy1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035562.1 MGP_CASTEiJ_G0019392.1 mouse_genomes_project 12 105232592 105241769 + Yy1 protein_coding retained_intron MGP_CASTEiJ_T0098478.1 MGP_CASTEiJ_G0035409.1 mouse_genomes_project 12 38870688 38870772 + Gm22076 rRNA rRNA MGP_CASTEiJ_T0006334.1 MGP_CASTEiJ_G0005274.1 mouse_genomes_project 12 107774839 107777396 + A230087F16Rik lincRNA lincRNA MGP_CASTEiJ_T0006335.1 MGP_CASTEiJ_G0005274.1 mouse_genomes_project 12 107774861 107784028 + A230087F16Rik lincRNA lincRNA MGP_CASTEiJ_T0035270.1 MGP_CASTEiJ_G0019294.1 mouse_genomes_project 12 94267769 94408936 - MGP_CASTEiJ_P0035270 Kcnk10 protein_coding protein_coding MGP_CASTEiJ_T0034383.1 MGP_CASTEiJ_G0019005.1 mouse_genomes_project 12 33716770 33834263 - MGP_CASTEiJ_P0034383 Zfp277 protein_coding protein_coding MGP_CASTEiJ_T0034384.1 MGP_CASTEiJ_G0019005.1 mouse_genomes_project 12 33717282 33834242 - MGP_CASTEiJ_P0034384 Zfp277 protein_coding protein_coding MGP_CASTEiJ_T0000123.1 MGP_CASTEiJ_G0000093.1 mouse_genomes_project 12 111760409 111987659 - MGP_CASTEiJ_P0000123 IG_V_gene IG_V_gene MGP_CASTEiJ_T0012460.1 MGP_CASTEiJ_G0010623.1 mouse_genomes_project 12 60468275 60468914 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035310.1 MGP_CASTEiJ_G0019303.1 mouse_genomes_project 12 95891542 95994640 + MGP_CASTEiJ_P0035310 Kcnk13 protein_coding protein_coding MGP_CASTEiJ_T0035311.1 MGP_CASTEiJ_G0019303.1 mouse_genomes_project 12 95891542 95994640 + MGP_CASTEiJ_P0035311 Kcnk13 protein_coding protein_coding MGP_CASTEiJ_T0035312.1 MGP_CASTEiJ_G0019303.1 mouse_genomes_project 12 95891548 95893314 + MGP_CASTEiJ_P0035312 Kcnk13 protein_coding protein_coding MGP_CASTEiJ_T0035313.1 MGP_CASTEiJ_G0019303.1 mouse_genomes_project 12 95891568 95994631 + MGP_CASTEiJ_P0035313 Kcnk13 protein_coding protein_coding MGP_CASTEiJ_T0034053.1 MGP_CASTEiJ_G0018891.1 mouse_genomes_project 12 5882346 5903196 + MGP_CASTEiJ_P0034053 Sdc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034054.1 MGP_CASTEiJ_G0018891.1 mouse_genomes_project 12 5882725 5901272 + Sdc1 protein_coding retained_intron MGP_CASTEiJ_T0034055.1 MGP_CASTEiJ_G0018891.1 mouse_genomes_project 12 5883204 5901837 + Sdc1 protein_coding processed_transcript MGP_CASTEiJ_T0006298.1 MGP_CASTEiJ_G0005260.1 mouse_genomes_project 12 103412097 103429715 - Gm16084 lincRNA lincRNA MGP_CASTEiJ_T0102028.1 MGP_CASTEiJ_G0038753.1 mouse_genomes_project 12 100334574 100340104 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0035066.1 MGP_CASTEiJ_G0019240.1 mouse_genomes_project 12 80087152 80141191 - MGP_CASTEiJ_P0035066 Arel1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035067.1 MGP_CASTEiJ_G0019240.1 mouse_genomes_project 12 80087154 80141267 - MGP_CASTEiJ_P0035067 Arel1 protein_coding protein_coding MGP_CASTEiJ_T0035068.1 MGP_CASTEiJ_G0019240.1 mouse_genomes_project 12 80105577 80113776 - MGP_CASTEiJ_P0035068 Arel1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035069.1 MGP_CASTEiJ_G0019240.1 mouse_genomes_project 12 80111014 80117315 - MGP_CASTEiJ_P0035069 Arel1 protein_coding protein_coding MGP_CASTEiJ_T0035070.1 MGP_CASTEiJ_G0019240.1 mouse_genomes_project 12 80112614 80115796 - MGP_CASTEiJ_P0035070 Arel1 protein_coding protein_coding MGP_CASTEiJ_T0035071.1 MGP_CASTEiJ_G0019240.1 mouse_genomes_project 12 80112635 80141223 - MGP_CASTEiJ_P0035071 Arel1 protein_coding protein_coding MGP_CASTEiJ_T0035072.1 MGP_CASTEiJ_G0019240.1 mouse_genomes_project 12 80112644 80141205 - MGP_CASTEiJ_P0035072 Arel1 protein_coding protein_coding MGP_CASTEiJ_T0000072.1 MGP_CASTEiJ_G0000059.1 mouse_genomes_project 12 110811493 110811932 - MGP_CASTEiJ_P0000072 Ighv3-3 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000073.1 MGP_CASTEiJ_G0000059.1 mouse_genomes_project 12 110811493 110811789 - MGP_CASTEiJ_P0000073 Ighv3-3 IG_V_gene IG_V_gene MGP_CASTEiJ_T0006283.1 MGP_CASTEiJ_G0005249.1 mouse_genomes_project 12 98516454 98523872 - Gm21971 lincRNA lincRNA MGP_CASTEiJ_T0034438.1 MGP_CASTEiJ_G0019029.1 mouse_genomes_project 12 46359707 46821007 + MGP_CASTEiJ_P0034438 Akap6 protein_coding protein_coding MGP_CASTEiJ_T0035499.1 MGP_CASTEiJ_G0019374.1 mouse_genomes_project 12 101538718 101579788 + MGP_CASTEiJ_P0035499 D430019H16Rik protein_coding protein_coding MGP_CASTEiJ_T0012477.1 MGP_CASTEiJ_G0010640.1 mouse_genomes_project 12 83785932 83786371 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035482.1 MGP_CASTEiJ_G0019364.1 mouse_genomes_project 12 100786214 100896860 - MGP_CASTEiJ_P0035482 Clmn protein_coding protein_coding MGP_CASTEiJ_T0035483.1 MGP_CASTEiJ_G0019364.1 mouse_genomes_project 12 100786214 100896860 - MGP_CASTEiJ_P0035483 Clmn protein_coding protein_coding MGP_CASTEiJ_T0035476.1 MGP_CASTEiJ_G0019360.1 mouse_genomes_project 12 100389104 100395959 + MGP_CASTEiJ_P0035476 Serpina3n protein_coding unknown_likely_coding MGP_CASTEiJ_T0035477.1 MGP_CASTEiJ_G0019360.1 mouse_genomes_project 12 100389107 100397698 + MGP_CASTEiJ_P0035477 Serpina3n protein_coding protein_coding MGP_CASTEiJ_T0034809.1 MGP_CASTEiJ_G0019160.1 mouse_genomes_project 12 71513450 71539438 - MGP_CASTEiJ_P0034809 Rab15 protein_coding protein_coding MGP_CASTEiJ_T0034810.1 MGP_CASTEiJ_G0019160.1 mouse_genomes_project 12 71515358 71516318 - Rab15 protein_coding retained_intron MGP_CASTEiJ_T0034811.1 MGP_CASTEiJ_G0019160.1 mouse_genomes_project 12 71515606 71520945 - MGP_CASTEiJ_P0034811 Rab15 protein_coding protein_coding MGP_CASTEiJ_T0034812.1 MGP_CASTEiJ_G0019160.1 mouse_genomes_project 12 71515813 71540032 - MGP_CASTEiJ_P0034812 Rab15 protein_coding protein_coding MGP_CASTEiJ_T0034813.1 MGP_CASTEiJ_G0019160.1 mouse_genomes_project 12 71516049 71536217 - MGP_CASTEiJ_P0034813 Rab15 protein_coding protein_coding MGP_CASTEiJ_T0034814.1 MGP_CASTEiJ_G0019160.1 mouse_genomes_project 12 71518344 71539583 - Rab15 protein_coding retained_intron MGP_CASTEiJ_T0012439.1 MGP_CASTEiJ_G0010602.1 mouse_genomes_project 12 16453736 16454140 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035328.1 MGP_CASTEiJ_G0019309.1 mouse_genomes_project 12 96744499 96836324 + MGP_CASTEiJ_P0035328 9030617O03Rik protein_coding protein_coding MGP_CASTEiJ_T0035329.1 MGP_CASTEiJ_G0019309.1 mouse_genomes_project 12 96744520 96836068 + MGP_CASTEiJ_P0035329 9030617O03Rik protein_coding protein_coding MGP_CASTEiJ_T0035330.1 MGP_CASTEiJ_G0019309.1 mouse_genomes_project 12 96744528 96863616 + MGP_CASTEiJ_P0035330 9030617O03Rik protein_coding protein_coding MGP_CASTEiJ_T0035331.1 MGP_CASTEiJ_G0019309.1 mouse_genomes_project 12 96744537 96836068 + MGP_CASTEiJ_P0035331 9030617O03Rik protein_coding protein_coding MGP_CASTEiJ_T0035332.1 MGP_CASTEiJ_G0019309.1 mouse_genomes_project 12 96744578 96800570 + MGP_CASTEiJ_P0035332 9030617O03Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035333.1 MGP_CASTEiJ_G0019309.1 mouse_genomes_project 12 96751449 96836062 + MGP_CASTEiJ_P0035333 9030617O03Rik protein_coding protein_coding MGP_CASTEiJ_T0035334.1 MGP_CASTEiJ_G0019309.1 mouse_genomes_project 12 96831120 96841259 + MGP_CASTEiJ_P0035334 9030617O03Rik protein_coding protein_coding MGP_CASTEiJ_T0035339.1 MGP_CASTEiJ_G0019309.1 mouse_genomes_project 12 96852693 96862126 + 9030617O03Rik protein_coding processed_transcript MGP_CASTEiJ_T0034449.1 MGP_CASTEiJ_G0019034.1 mouse_genomes_project 12 48470280 48511461 - MGP_CASTEiJ_P0034449 Snx6 protein_coding protein_coding MGP_CASTEiJ_T0035192.1 MGP_CASTEiJ_G0019279.1 mouse_genomes_project 12 82684363 82772097 - MGP_CASTEiJ_P0035192 Sptlc2 protein_coding protein_coding MGP_CASTEiJ_T0035193.1 MGP_CASTEiJ_G0019279.1 mouse_genomes_project 12 82687239 82726718 - Sptlc2 protein_coding retained_intron MGP_CASTEiJ_T0035194.1 MGP_CASTEiJ_G0019279.1 mouse_genomes_project 12 82688808 82710601 - Sptlc2 protein_coding processed_transcript MGP_CASTEiJ_T0035195.1 MGP_CASTEiJ_G0019279.1 mouse_genomes_project 12 82729328 82733251 - Sptlc2 protein_coding retained_intron MGP_CASTEiJ_T0035196.1 MGP_CASTEiJ_G0019279.1 mouse_genomes_project 12 82729604 82771983 - Sptlc2 protein_coding processed_transcript MGP_CASTEiJ_T0000121.1 MGP_CASTEiJ_G0000091.1 mouse_genomes_project 12 111760393 111987690 - MGP_CASTEiJ_P0000121 IG_V_gene IG_V_gene MGP_CASTEiJ_T0099296.1 MGP_CASTEiJ_G0036209.1 mouse_genomes_project 12 25995931 25996034 - Gm24922 snRNA snRNA MGP_CASTEiJ_T0000249.1 MGP_CASTEiJ_G0000198.1 mouse_genomes_project 12 111554996 111555430 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0034001.1 MGP_CASTEiJ_G0018876.1 mouse_genomes_project 12 1705483 1714323 + MGP_CASTEiJ_P0034001 Pfn4 protein_coding protein_coding MGP_CASTEiJ_T0034002.1 MGP_CASTEiJ_G0018876.1 mouse_genomes_project 12 1705643 1714295 + MGP_CASTEiJ_P0034002 Pfn4 protein_coding protein_coding MGP_CASTEiJ_T0003299.1 MGP_CASTEiJ_G0003039.1 mouse_genomes_project 12 78078991 78118486 - Gm29530 antisense antisense MGP_CASTEiJ_T0035394.1 MGP_CASTEiJ_G0019329.1 mouse_genomes_project 12 98552207 98556540 - MGP_CASTEiJ_P0035394 AK010878 protein_coding protein_coding MGP_CASTEiJ_T0035395.1 MGP_CASTEiJ_G0019329.1 mouse_genomes_project 12 98555013 98556543 - MGP_CASTEiJ_P0035395 AK010878 protein_coding protein_coding MGP_CASTEiJ_T0034515.1 MGP_CASTEiJ_G0019060.1 mouse_genomes_project 12 52110562 52115104 - MGP_CASTEiJ_P0034515 Clec14a protein_coding protein_coding MGP_CASTEiJ_T0006336.1 MGP_CASTEiJ_G0005275.1 mouse_genomes_project 12 107909931 107914004 - Gm10425 lincRNA lincRNA MGP_CASTEiJ_T0000820.1 MGP_CASTEiJ_G0000760.1 mouse_genomes_project 12 51377472 51381935 + TEC TEC MGP_CASTEiJ_T0035528.1 MGP_CASTEiJ_G0019381.1 mouse_genomes_project 12 102150448 102225956 + MGP_CASTEiJ_P0035528 Vrk1 protein_coding protein_coding MGP_CASTEiJ_T0035529.1 MGP_CASTEiJ_G0019381.1 mouse_genomes_project 12 102152328 102225069 + MGP_CASTEiJ_P0035529 Vrk1 protein_coding protein_coding MGP_CASTEiJ_T0034862.1 MGP_CASTEiJ_G0019182.1 mouse_genomes_project 12 75409715 75497457 + MGP_CASTEiJ_P0034862 Galnt16 protein_coding protein_coding MGP_CASTEiJ_T0100523.1 MGP_CASTEiJ_G0037436.1 mouse_genomes_project 12 82830332 82830468 - Mir3068 snoRNA snoRNA MGP_CASTEiJ_T0035707.1 MGP_CASTEiJ_G0019437.1 mouse_genomes_project 12 109190384 109211622 + MGP_CASTEiJ_P0035707 Adssl1 protein_coding protein_coding MGP_CASTEiJ_T0035708.1 MGP_CASTEiJ_G0019437.1 mouse_genomes_project 12 109190386 109211637 + MGP_CASTEiJ_P0035708 Adssl1 protein_coding protein_coding MGP_CASTEiJ_T0035159.1 MGP_CASTEiJ_G0019267.1 mouse_genomes_project 12 82272569 82290671 + MGP_CASTEiJ_P0035159 Cipc protein_coding protein_coding MGP_CASTEiJ_T0035160.1 MGP_CASTEiJ_G0019267.1 mouse_genomes_project 12 82272569 82291805 + MGP_CASTEiJ_P0035160 Cipc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035161.1 MGP_CASTEiJ_G0019267.1 mouse_genomes_project 12 82272625 82289971 + MGP_CASTEiJ_P0035161 Cipc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035162.1 MGP_CASTEiJ_G0019267.1 mouse_genomes_project 12 82272869 82293358 + MGP_CASTEiJ_P0035162 Cipc protein_coding protein_coding MGP_CASTEiJ_T0035163.1 MGP_CASTEiJ_G0019267.1 mouse_genomes_project 12 82272922 82278593 + Cipc protein_coding retained_intron MGP_CASTEiJ_T0035164.1 MGP_CASTEiJ_G0019267.1 mouse_genomes_project 12 82272944 82288361 + MGP_CASTEiJ_P0035164 Cipc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035165.1 MGP_CASTEiJ_G0019267.1 mouse_genomes_project 12 82272980 82288360 + MGP_CASTEiJ_P0035165 Cipc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035166.1 MGP_CASTEiJ_G0019267.1 mouse_genomes_project 12 82272992 82288277 + MGP_CASTEiJ_P0035166 Cipc protein_coding protein_coding MGP_CASTEiJ_T0035167.1 MGP_CASTEiJ_G0019267.1 mouse_genomes_project 12 82273016 82289887 + MGP_CASTEiJ_P0035167 Cipc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035168.1 MGP_CASTEiJ_G0019267.1 mouse_genomes_project 12 82278092 82290837 + MGP_CASTEiJ_P0035168 Cipc protein_coding protein_coding MGP_CASTEiJ_T0000252.1 MGP_CASTEiJ_G0000201.1 mouse_genomes_project 12 111600533 111600833 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0100509.1 MGP_CASTEiJ_G0037422.1 mouse_genomes_project 12 53526880 53527011 + Gm22673 snoRNA snoRNA MGP_CASTEiJ_T0100528.1 MGP_CASTEiJ_G0037441.1 mouse_genomes_project 12 106088101 106088176 + Gm23474 snoRNA snoRNA MGP_CASTEiJ_T0035408.1 MGP_CASTEiJ_G0019334.1 mouse_genomes_project 12 99024997 99031007 - protein_coding processed_transcript MGP_CASTEiJ_T0035409.1 MGP_CASTEiJ_G0019334.1 mouse_genomes_project 12 99024997 99070351 - MGP_CASTEiJ_P0035409 protein_coding protein_coding MGP_CASTEiJ_T0035410.1 MGP_CASTEiJ_G0019334.1 mouse_genomes_project 12 99024997 99070347 - MGP_CASTEiJ_P0035410 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035411.1 MGP_CASTEiJ_G0019334.1 mouse_genomes_project 12 99025357 99070329 - MGP_CASTEiJ_P0035411 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035412.1 MGP_CASTEiJ_G0019334.1 mouse_genomes_project 12 99063841 99064227 - protein_coding processed_transcript MGP_CASTEiJ_T0012482.1 MGP_CASTEiJ_G0010645.1 mouse_genomes_project 12 91771095 91771449 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034779.1 MGP_CASTEiJ_G0019146.1 mouse_genomes_project 12 70795494 70863207 - MGP_CASTEiJ_P0034779 Esr2 protein_coding protein_coding MGP_CASTEiJ_T0034780.1 MGP_CASTEiJ_G0019146.1 mouse_genomes_project 12 70795494 70852868 - MGP_CASTEiJ_P0034780 Esr2 protein_coding protein_coding MGP_CASTEiJ_T0034781.1 MGP_CASTEiJ_G0019146.1 mouse_genomes_project 12 70795494 70863207 - MGP_CASTEiJ_P0034781 Esr2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034782.1 MGP_CASTEiJ_G0019146.1 mouse_genomes_project 12 70795516 70863207 - MGP_CASTEiJ_P0034782 Esr2 protein_coding protein_coding MGP_CASTEiJ_T0035490.1 MGP_CASTEiJ_G0019370.1 mouse_genomes_project 12 101234074 101240156 + MGP_CASTEiJ_P0035490 Tcl1b1 protein_coding protein_coding MGP_CASTEiJ_T0034680.1 MGP_CASTEiJ_G0019114.1 mouse_genomes_project 12 66251821 66407788 + MGP_CASTEiJ_P0034680 Daam1 protein_coding protein_coding MGP_CASTEiJ_T0034681.1 MGP_CASTEiJ_G0019114.1 mouse_genomes_project 12 66333157 66411583 + MGP_CASTEiJ_P0034681 Daam1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009535.1 MGP_CASTEiJ_G0007723.1 mouse_genomes_project 12 19145937 19146047 - Mir6538 miRNA miRNA MGP_CASTEiJ_T0034825.1 MGP_CASTEiJ_G0019163.1 mouse_genomes_project 12 73002087 73471131 + MGP_CASTEiJ_P0034825 protein_coding protein_coding MGP_CASTEiJ_T0034826.1 MGP_CASTEiJ_G0019163.1 mouse_genomes_project 12 73002087 73471131 + MGP_CASTEiJ_P0034826 protein_coding protein_coding MGP_CASTEiJ_T0035115.1 MGP_CASTEiJ_G0019256.1 mouse_genomes_project 12 80903626 80927725 + MGP_CASTEiJ_P0035115 Batf protein_coding protein_coding MGP_CASTEiJ_T0035437.1 MGP_CASTEiJ_G0019341.1 mouse_genomes_project 12 99279738 99281250 - MGP_CASTEiJ_P0035437 Ifi27l2a protein_coding protein_coding MGP_CASTEiJ_T0000136.1 MGP_CASTEiJ_G0000104.1 mouse_genomes_project 12 112070275 112070708 - MGP_CASTEiJ_P0000136 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000139.1 MGP_CASTEiJ_G0000104.1 mouse_genomes_project 12 112070478 112070568 - MGP_CASTEiJ_P0000139 IG_V_gene IG_V_gene MGP_CASTEiJ_T0012497.1 MGP_CASTEiJ_G0010660.1 mouse_genomes_project 12 109792264 109793084 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009645.1 MGP_CASTEiJ_G0007833.1 mouse_genomes_project 12 108652339 108652399 - Mir3073b miRNA miRNA MGP_CASTEiJ_T0012440.1 MGP_CASTEiJ_G0010603.1 mouse_genomes_project 12 16453770 16454132 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035534.1 MGP_CASTEiJ_G0019384.1 mouse_genomes_project 12 104460924 104538801 - MGP_CASTEiJ_P0035534 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035535.1 MGP_CASTEiJ_G0019384.1 mouse_genomes_project 12 104461163 104473447 - protein_coding retained_intron MGP_CASTEiJ_T0035536.1 MGP_CASTEiJ_G0019384.1 mouse_genomes_project 12 104463869 104538707 - MGP_CASTEiJ_P0035536 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035537.1 MGP_CASTEiJ_G0019384.1 mouse_genomes_project 12 104470628 104473583 - protein_coding processed_transcript MGP_CASTEiJ_T0035538.1 MGP_CASTEiJ_G0019384.1 mouse_genomes_project 12 104475263 104538696 - MGP_CASTEiJ_P0035538 protein_coding protein_coding MGP_CASTEiJ_T0035539.1 MGP_CASTEiJ_G0019384.1 mouse_genomes_project 12 104475522 104538746 - MGP_CASTEiJ_P0035539 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035540.1 MGP_CASTEiJ_G0019384.1 mouse_genomes_project 12 104476781 104522545 - protein_coding processed_transcript MGP_CASTEiJ_T0035541.1 MGP_CASTEiJ_G0019384.1 mouse_genomes_project 12 104517522 104538693 - MGP_CASTEiJ_P0035541 protein_coding protein_coding MGP_CASTEiJ_T0003314.1 MGP_CASTEiJ_G0003052.1 mouse_genomes_project 12 113358195 113470294 - Gm5441 antisense antisense MGP_CASTEiJ_T0003315.1 MGP_CASTEiJ_G0003052.1 mouse_genomes_project 12 113404512 113470304 - Gm5441 antisense antisense MGP_CASTEiJ_T0033993.1 MGP_CASTEiJ_G0018869.1 mouse_genomes_project 12 1128417 1133460 + MGP_CASTEiJ_P0033993 Ptrhd1 protein_coding protein_coding MGP_CASTEiJ_T0034507.1 MGP_CASTEiJ_G0019057.1 mouse_genomes_project 12 51392305 51397813 - MGP_CASTEiJ_P0034507 Foxa1 protein_coding protein_coding MGP_CASTEiJ_T0000040.1 MGP_CASTEiJ_G0000033.1 mouse_genomes_project 12 110107746 110107799 - MGP_CASTEiJ_P0000040 Ighj1 IG_J_gene IG_J_gene MGP_CASTEiJ_T0100496.1 MGP_CASTEiJ_G0037409.1 mouse_genomes_project 12 27969965 27970097 + Gm24429 snoRNA snoRNA MGP_CASTEiJ_T0035178.1 MGP_CASTEiJ_G0019271.1 mouse_genomes_project 12 82460245 82506738 - MGP_CASTEiJ_P0035178 Pomt2 protein_coding protein_coding MGP_CASTEiJ_T0035810.1 MGP_CASTEiJ_G0019473.1 mouse_genomes_project 12 115382079 115466009 - MGP_CASTEiJ_P0035810 Itgb8 protein_coding protein_coding MGP_CASTEiJ_T0035811.1 MGP_CASTEiJ_G0019473.1 mouse_genomes_project 12 115412812 115466008 - Itgb8 protein_coding retained_intron MGP_CASTEiJ_T0035812.1 MGP_CASTEiJ_G0019473.1 mouse_genomes_project 12 115426533 115465977 - Itgb8 protein_coding retained_intron MGP_CASTEiJ_T0006254.1 MGP_CASTEiJ_G0005224.1 mouse_genomes_project 12 64198549 64204423 + 4931403G20Rik lincRNA lincRNA MGP_CASTEiJ_T0035145.1 MGP_CASTEiJ_G0019263.1 mouse_genomes_project 12 81631574 81803379 + MGP_CASTEiJ_P0035145 Esrrb protein_coding protein_coding MGP_CASTEiJ_T0035146.1 MGP_CASTEiJ_G0019263.1 mouse_genomes_project 12 81696096 81803376 + MGP_CASTEiJ_P0035146 Esrrb protein_coding protein_coding MGP_CASTEiJ_T0035147.1 MGP_CASTEiJ_G0019263.1 mouse_genomes_project 12 81696096 81797534 + MGP_CASTEiJ_P0035147 Esrrb protein_coding protein_coding MGP_CASTEiJ_T0035148.1 MGP_CASTEiJ_G0019263.1 mouse_genomes_project 12 81696335 81801551 + MGP_CASTEiJ_P0035148 Esrrb protein_coding protein_coding MGP_CASTEiJ_T0035149.1 MGP_CASTEiJ_G0019263.1 mouse_genomes_project 12 81748419 81800816 + MGP_CASTEiJ_P0035149 Esrrb protein_coding protein_coding MGP_CASTEiJ_T0035150.1 MGP_CASTEiJ_G0019263.1 mouse_genomes_project 12 81786182 81791982 + Esrrb protein_coding processed_transcript MGP_CASTEiJ_T0098328.1 MGP_CASTEiJ_G0035259.1 mouse_genomes_project 12 6597401 6597955 + pseudogene pseudogene MGP_CASTEiJ_T0035752.1 MGP_CASTEiJ_G0019455.1 mouse_genomes_project 12 109755976 109761243 + MGP_CASTEiJ_P0035752 Crip2 protein_coding protein_coding MGP_CASTEiJ_T0035753.1 MGP_CASTEiJ_G0019455.1 mouse_genomes_project 12 109756312 109762078 + MGP_CASTEiJ_P0035753 Crip2 protein_coding protein_coding MGP_CASTEiJ_T0035754.1 MGP_CASTEiJ_G0019455.1 mouse_genomes_project 12 109756312 109760840 + MGP_CASTEiJ_P0035754 Crip2 protein_coding protein_coding MGP_CASTEiJ_T0035755.1 MGP_CASTEiJ_G0019455.1 mouse_genomes_project 12 109759075 109760706 + Crip2 protein_coding retained_intron MGP_CASTEiJ_T0035756.1 MGP_CASTEiJ_G0019455.1 mouse_genomes_project 12 109759210 109759968 + Crip2 protein_coding retained_intron MGP_CASTEiJ_T0035757.1 MGP_CASTEiJ_G0019455.1 mouse_genomes_project 12 109759822 109760441 + Crip2 protein_coding retained_intron MGP_CASTEiJ_T0034021.1 MGP_CASTEiJ_G0018884.1 mouse_genomes_project 12 5020592 5030930 + MGP_CASTEiJ_P0034021 Apob protein_coding protein_coding MGP_CASTEiJ_T0034022.1 MGP_CASTEiJ_G0018884.1 mouse_genomes_project 12 5020592 5061611 + MGP_CASTEiJ_P0034022 Apob protein_coding protein_coding MGP_CASTEiJ_T0034023.1 MGP_CASTEiJ_G0018884.1 mouse_genomes_project 12 5020680 5061375 + MGP_CASTEiJ_P0034023 Apob protein_coding unknown_likely_coding MGP_CASTEiJ_T0034024.1 MGP_CASTEiJ_G0018884.1 mouse_genomes_project 12 5020723 5061276 + MGP_CASTEiJ_P0034024 Apob protein_coding protein_coding MGP_CASTEiJ_T0034025.1 MGP_CASTEiJ_G0018884.1 mouse_genomes_project 12 5057116 5061611 + MGP_CASTEiJ_P0034025 Apob protein_coding protein_coding MGP_CASTEiJ_T0034005.1 MGP_CASTEiJ_G0018879.1 mouse_genomes_project 12 1776640 1786636 + MGP_CASTEiJ_P0034005 BC068281 protein_coding protein_coding MGP_CASTEiJ_T0034006.1 MGP_CASTEiJ_G0018879.1 mouse_genomes_project 12 1783839 1790480 + MGP_CASTEiJ_P0034006 BC068281 protein_coding protein_coding MGP_CASTEiJ_T0034491.1 MGP_CASTEiJ_G0019053.1 mouse_genomes_project 12 50446174 50473345 + MGP_CASTEiJ_P0034491 Pax9 protein_coding protein_coding MGP_CASTEiJ_T0034492.1 MGP_CASTEiJ_G0019053.1 mouse_genomes_project 12 50447737 50473464 + MGP_CASTEiJ_P0034492 Pax9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034493.1 MGP_CASTEiJ_G0019053.1 mouse_genomes_project 12 50450830 50473460 + MGP_CASTEiJ_P0034493 Pax9 protein_coding protein_coding MGP_CASTEiJ_T0034494.1 MGP_CASTEiJ_G0019053.1 mouse_genomes_project 12 50450920 50469741 + Pax9 protein_coding retained_intron MGP_CASTEiJ_T0016594.1 MGP_CASTEiJ_G0014557.1 mouse_genomes_project 12 113268596 113275464 - Gm10421 processed_transcript antisense MGP_CASTEiJ_T0016595.1 MGP_CASTEiJ_G0014557.1 mouse_genomes_project 12 113269428 113275518 - Gm10421 processed_transcript retained_intron MGP_CASTEiJ_T0016596.1 MGP_CASTEiJ_G0014557.1 mouse_genomes_project 12 113275338 113275900 - Gm10421 processed_transcript antisense MGP_CASTEiJ_T0034232.1 MGP_CASTEiJ_G0018956.1 mouse_genomes_project 12 23764399 23773964 + MGP_CASTEiJ_P0034232 Fam150b protein_coding protein_coding MGP_CASTEiJ_T0012500.1 MGP_CASTEiJ_G0010663.1 mouse_genomes_project 12 110795629 110795940 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000828.1 MGP_CASTEiJ_G0000768.1 mouse_genomes_project 12 84771653 84773563 - TEC TEC MGP_CASTEiJ_T0034904.1 MGP_CASTEiJ_G0019195.1 mouse_genomes_project 12 76466172 76469192 - Synj2bp protein_coding retained_intron MGP_CASTEiJ_T0034905.1 MGP_CASTEiJ_G0019195.1 mouse_genomes_project 12 76466402 76496680 - MGP_CASTEiJ_P0034905 Synj2bp protein_coding protein_coding MGP_CASTEiJ_T0034906.1 MGP_CASTEiJ_G0019195.1 mouse_genomes_project 12 76468354 76475654 - MGP_CASTEiJ_P0034906 Synj2bp protein_coding protein_coding MGP_CASTEiJ_T0034907.1 MGP_CASTEiJ_G0019195.1 mouse_genomes_project 12 76468480 76496673 - MGP_CASTEiJ_P0034907 Synj2bp protein_coding protein_coding MGP_CASTEiJ_T0006319.1 MGP_CASTEiJ_G0005270.1 mouse_genomes_project 12 106160248 106167238 + B830012L14Rik lincRNA lincRNA MGP_CASTEiJ_T0009587.1 MGP_CASTEiJ_G0007775.1 mouse_genomes_project 12 106044641 106044765 + Mir433 miRNA miRNA MGP_CASTEiJ_T0035744.1 MGP_CASTEiJ_G0019454.1 mouse_genomes_project 12 109706750 109752925 + MGP_CASTEiJ_P0035744 Mta1 protein_coding protein_coding MGP_CASTEiJ_T0035745.1 MGP_CASTEiJ_G0019454.1 mouse_genomes_project 12 109706750 109752926 + MGP_CASTEiJ_P0035745 Mta1 protein_coding protein_coding MGP_CASTEiJ_T0035746.1 MGP_CASTEiJ_G0019454.1 mouse_genomes_project 12 109706750 109752926 + MGP_CASTEiJ_P0035746 Mta1 protein_coding protein_coding MGP_CASTEiJ_T0035747.1 MGP_CASTEiJ_G0019454.1 mouse_genomes_project 12 109706750 109752926 + MGP_CASTEiJ_P0035747 Mta1 protein_coding protein_coding MGP_CASTEiJ_T0035748.1 MGP_CASTEiJ_G0019454.1 mouse_genomes_project 12 109706793 109752893 + MGP_CASTEiJ_P0035748 Mta1 protein_coding protein_coding MGP_CASTEiJ_T0035749.1 MGP_CASTEiJ_G0019454.1 mouse_genomes_project 12 109706828 109752391 + Mta1 protein_coding processed_transcript MGP_CASTEiJ_T0035750.1 MGP_CASTEiJ_G0019454.1 mouse_genomes_project 12 109747053 109749102 + Mta1 protein_coding processed_transcript MGP_CASTEiJ_T0035751.1 MGP_CASTEiJ_G0019454.1 mouse_genomes_project 12 109747269 109749060 + Mta1 protein_coding processed_transcript MGP_CASTEiJ_T0009589.1 MGP_CASTEiJ_G0007777.1 mouse_genomes_project 12 106047384 106047526 + Mir434 miRNA miRNA MGP_CASTEiJ_T0034621.1 MGP_CASTEiJ_G0019096.1 mouse_genomes_project 12 64091473 64139323 - MGP_CASTEiJ_P0034621 Cdkl1 protein_coding protein_coding MGP_CASTEiJ_T0035726.1 MGP_CASTEiJ_G0019443.1 mouse_genomes_project 12 109353179 109356000 - MGP_CASTEiJ_P0035726 protein_coding protein_coding MGP_CASTEiJ_T0034560.1 MGP_CASTEiJ_G0019071.1 mouse_genomes_project 12 59037995 59044695 + MGP_CASTEiJ_P0034560 Gm527 protein_coding protein_coding MGP_CASTEiJ_T0034257.1 MGP_CASTEiJ_G0018964.1 mouse_genomes_project 12 24375223 24391861 - MGP_CASTEiJ_P0034257 Cbll1 protein_coding protein_coding MGP_CASTEiJ_T0034258.1 MGP_CASTEiJ_G0018964.1 mouse_genomes_project 12 24375330 24391861 - MGP_CASTEiJ_P0034258 Cbll1 protein_coding protein_coding MGP_CASTEiJ_T0034259.1 MGP_CASTEiJ_G0018964.1 mouse_genomes_project 12 24377667 24391861 - MGP_CASTEiJ_P0034259 Cbll1 protein_coding protein_coding MGP_CASTEiJ_T0034260.1 MGP_CASTEiJ_G0018964.1 mouse_genomes_project 12 24378303 24391802 - MGP_CASTEiJ_P0034260 Cbll1 protein_coding protein_coding MGP_CASTEiJ_T0034261.1 MGP_CASTEiJ_G0018964.1 mouse_genomes_project 12 24378313 24391800 - MGP_CASTEiJ_P0034261 Cbll1 protein_coding protein_coding MGP_CASTEiJ_T0012496.1 MGP_CASTEiJ_G0010659.1 mouse_genomes_project 12 108389780 108392354 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033922.1 MGP_CASTEiJ_G0018859.1 mouse_genomes_project 12 188623 228726 + MGP_CASTEiJ_P0033922 Kif3c protein_coding protein_coding MGP_CASTEiJ_T0034348.1 MGP_CASTEiJ_G0018998.1 mouse_genomes_project 12 31123267 31916677 + MGP_CASTEiJ_P0034348 Dgkb protein_coding protein_coding MGP_CASTEiJ_T0000012.1 MGP_CASTEiJ_G0000009.1 mouse_genomes_project 12 110031443 110033101 - MGP_CASTEiJ_P0000012 Ighg3 IG_C_gene IG_C_gene MGP_CASTEiJ_T0100491.1 MGP_CASTEiJ_G0037404.1 mouse_genomes_project 12 17429232 17429361 + Gm26211 snoRNA snoRNA MGP_CASTEiJ_T0003312.1 MGP_CASTEiJ_G0003050.1 mouse_genomes_project 12 105473926 105474395 + Gm28498 antisense antisense MGP_CASTEiJ_T0009532.1 MGP_CASTEiJ_G0007720.1 mouse_genomes_project 12 8479852 8479910 + Mir7675 miRNA miRNA MGP_CASTEiJ_T0009582.1 MGP_CASTEiJ_G0007770.1 mouse_genomes_project 12 106039148 106039215 + Mir540 miRNA miRNA MGP_CASTEiJ_T0003309.1 MGP_CASTEiJ_G0003048.1 mouse_genomes_project 12 99141931 99143572 - Gm29508 antisense antisense MGP_CASTEiJ_T0003310.1 MGP_CASTEiJ_G0003048.1 mouse_genomes_project 12 99141932 99144324 - Gm29508 antisense antisense MGP_CASTEiJ_T0035657.1 MGP_CASTEiJ_G0019421.1 mouse_genomes_project 12 108170327 108173318 - MGP_CASTEiJ_P0035657 Ckb protein_coding protein_coding MGP_CASTEiJ_T0034398.1 MGP_CASTEiJ_G0019011.1 mouse_genomes_project 12 37822158 38103938 + MGP_CASTEiJ_P0034398 Nrcam protein_coding protein_coding MGP_CASTEiJ_T0034399.1 MGP_CASTEiJ_G0019011.1 mouse_genomes_project 12 37822158 38103938 + MGP_CASTEiJ_P0034399 Nrcam protein_coding protein_coding MGP_CASTEiJ_T0034400.1 MGP_CASTEiJ_G0019011.1 mouse_genomes_project 12 38026346 38100687 + MGP_CASTEiJ_P0034400 Nrcam protein_coding unknown_likely_coding MGP_CASTEiJ_T0034401.1 MGP_CASTEiJ_G0019011.1 mouse_genomes_project 12 38038997 38102140 + MGP_CASTEiJ_P0034401 Nrcam protein_coding unknown_likely_coding MGP_CASTEiJ_T0003311.1 MGP_CASTEiJ_G0003049.1 mouse_genomes_project 12 99168388 99181936 + Gm15523 antisense antisense MGP_CASTEiJ_T0034888.1 MGP_CASTEiJ_G0019192.1 mouse_genomes_project 12 76301117 76496698 - MGP_CASTEiJ_P0034888 Gm20498 protein_coding protein_coding MGP_CASTEiJ_T0034892.1 MGP_CASTEiJ_G0019192.1 mouse_genomes_project 12 76428972 76496675 - MGP_CASTEiJ_P0034892 Gm20498 protein_coding protein_coding MGP_CASTEiJ_T0034899.1 MGP_CASTEiJ_G0019192.1 mouse_genomes_project 12 76432926 76496670 - MGP_CASTEiJ_P0034899 Gm20498 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034900.1 MGP_CASTEiJ_G0019192.1 mouse_genomes_project 12 76432962 76496554 - Gm20498 protein_coding processed_transcript MGP_CASTEiJ_T0034901.1 MGP_CASTEiJ_G0019192.1 mouse_genomes_project 12 76432984 76496670 - Gm20498 protein_coding processed_transcript MGP_CASTEiJ_T0034903.1 MGP_CASTEiJ_G0019192.1 mouse_genomes_project 12 76439727 76496670 - Gm20498 protein_coding processed_transcript MGP_CASTEiJ_T0012436.1 MGP_CASTEiJ_G0010599.1 mouse_genomes_project 12 6597401 6597553 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098490.1 MGP_CASTEiJ_G0035421.1 mouse_genomes_project 12 101745202 101745331 + Gm22790 rRNA rRNA MGP_CASTEiJ_T0034429.1 MGP_CASTEiJ_G0019024.1 mouse_genomes_project 12 45517004 45619585 - MGP_CASTEiJ_P0034429 Heatr5a protein_coding protein_coding MGP_CASTEiJ_T0034162.1 MGP_CASTEiJ_G0018930.1 mouse_genomes_project 12 17112138 17112588 - MGP_CASTEiJ_P0034162 Gm16372 protein_coding protein_coding MGP_CASTEiJ_T0034096.1 MGP_CASTEiJ_G0018913.1 mouse_genomes_project 12 13986983 13993695 + MGP_CASTEiJ_P0034096 Ntsr2 protein_coding protein_coding MGP_CASTEiJ_T0009574.1 MGP_CASTEiJ_G0007762.1 mouse_genomes_project 12 105138598 105138675 - Gm23872 miRNA miRNA MGP_CASTEiJ_T0035048.1 MGP_CASTEiJ_G0019231.1 mouse_genomes_project 12 79576898 79661680 + MGP_CASTEiJ_P0035048 Lin52 protein_coding protein_coding MGP_CASTEiJ_T0035004.1 MGP_CASTEiJ_G0019221.1 mouse_genomes_project 12 79244030 79246390 - MGP_CASTEiJ_P0035004 Pnma1 protein_coding protein_coding MGP_CASTEiJ_T0016572.1 MGP_CASTEiJ_G0014553.1 mouse_genomes_project 12 99837950 99853129 - Gm28577 processed_transcript processed_transcript MGP_CASTEiJ_T0003278.1 MGP_CASTEiJ_G0003022.1 mouse_genomes_project 12 33595912 33598354 + Gm17056 antisense antisense MGP_CASTEiJ_T0009560.1 MGP_CASTEiJ_G0007748.1 mouse_genomes_project 12 80433938 80434001 - Mir6938 miRNA miRNA MGP_CASTEiJ_T0034432.1 MGP_CASTEiJ_G0019026.1 mouse_genomes_project 12 45679724 45686740 - MGP_CASTEiJ_P0034432 Gpr33 protein_coding protein_coding MGP_CASTEiJ_T0003290.1 MGP_CASTEiJ_G0003031.1 mouse_genomes_project 12 65389588 65415946 - 3110056K07Rik antisense antisense MGP_CASTEiJ_T0003291.1 MGP_CASTEiJ_G0003031.1 mouse_genomes_project 12 65410144 65416183 - 3110056K07Rik antisense antisense MGP_CASTEiJ_T0006242.1 MGP_CASTEiJ_G0005214.1 mouse_genomes_project 12 24392312 24392990 - Gm29541 lincRNA lincRNA MGP_CASTEiJ_T0009606.1 MGP_CASTEiJ_G0007794.1 mouse_genomes_project 12 106179066 106179147 + Mir758 miRNA miRNA MGP_CASTEiJ_T0034803.1 MGP_CASTEiJ_G0019157.1 mouse_genomes_project 12 71477040 71498635 + MGP_CASTEiJ_P0034803 Churc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034804.1 MGP_CASTEiJ_G0019157.1 mouse_genomes_project 12 71480368 71498713 + MGP_CASTEiJ_P0034804 Churc1 protein_coding protein_coding MGP_CASTEiJ_T0034807.1 MGP_CASTEiJ_G0019157.1 mouse_genomes_project 12 71483104 71490528 + Churc1 protein_coding retained_intron MGP_CASTEiJ_T0034912.1 MGP_CASTEiJ_G0019198.1 mouse_genomes_project 12 76604980 76638249 + MGP_CASTEiJ_P0034912 Ttc9 protein_coding protein_coding MGP_CASTEiJ_T0000247.1 MGP_CASTEiJ_G0000196.1 mouse_genomes_project 12 111531998 111532432 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0000109.1 MGP_CASTEiJ_G0000084.1 mouse_genomes_project 12 111327811 111328245 - MGP_CASTEiJ_P0000109 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034393.1 MGP_CASTEiJ_G0019009.1 mouse_genomes_project 12 37697450 37701753 - MGP_CASTEiJ_P0034393 Dnajb9 protein_coding protein_coding MGP_CASTEiJ_T0009640.1 MGP_CASTEiJ_G0007828.1 mouse_genomes_project 12 106209907 106209988 + Mir410 miRNA miRNA MGP_CASTEiJ_T0034078.1 MGP_CASTEiJ_G0018903.1 mouse_genomes_project 12 8443128 8500650 + MGP_CASTEiJ_P0034078 Smc6 protein_coding protein_coding MGP_CASTEiJ_T0035475.1 MGP_CASTEiJ_G0019359.1 mouse_genomes_project 12 100312784 100320445 + MGP_CASTEiJ_P0035475 Serpina3k protein_coding protein_coding MGP_CASTEiJ_T0034619.1 MGP_CASTEiJ_G0019094.1 mouse_genomes_project 12 64024814 64060627 - MGP_CASTEiJ_P0034619 L2hgdh protein_coding protein_coding MGP_CASTEiJ_T0035279.1 MGP_CASTEiJ_G0019297.1 mouse_genomes_project 12 94589238 94633758 + MGP_CASTEiJ_P0035279 Zc3h14 protein_coding protein_coding MGP_CASTEiJ_T0035280.1 MGP_CASTEiJ_G0019297.1 mouse_genomes_project 12 94589238 94633758 + MGP_CASTEiJ_P0035280 Zc3h14 protein_coding protein_coding MGP_CASTEiJ_T0035281.1 MGP_CASTEiJ_G0019297.1 mouse_genomes_project 12 94589238 94633758 + MGP_CASTEiJ_P0035281 Zc3h14 protein_coding protein_coding MGP_CASTEiJ_T0035282.1 MGP_CASTEiJ_G0019297.1 mouse_genomes_project 12 94589294 94624494 + MGP_CASTEiJ_P0035282 Zc3h14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035283.1 MGP_CASTEiJ_G0019297.1 mouse_genomes_project 12 94615915 94633758 + MGP_CASTEiJ_P0035283 Zc3h14 protein_coding protein_coding MGP_CASTEiJ_T0035787.1 MGP_CASTEiJ_G0019464.1 mouse_genomes_project 12 112388626 112479746 + MGP_CASTEiJ_P0035787 Esyt2 protein_coding protein_coding MGP_CASTEiJ_T0012446.1 MGP_CASTEiJ_G0010609.1 mouse_genomes_project 12 45375909 45376220 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035491.1 MGP_CASTEiJ_G0019371.1 mouse_genomes_project 12 101234088 101240159 + MGP_CASTEiJ_P0035491 Tcl1b2 protein_coding protein_coding MGP_CASTEiJ_T0034870.1 MGP_CASTEiJ_G0019186.1 mouse_genomes_project 12 75662514 75667874 - MGP_CASTEiJ_P0034870 Ccdc177 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006296.1 MGP_CASTEiJ_G0005258.1 mouse_genomes_project 12 103344110 103365569 - Gm16086 lincRNA lincRNA MGP_CASTEiJ_T0034524.1 MGP_CASTEiJ_G0019063.1 mouse_genomes_project 12 52896209 52914330 - MGP_CASTEiJ_P0034524 Trappc6b protein_coding protein_coding MGP_CASTEiJ_T0034320.1 MGP_CASTEiJ_G0018985.1 mouse_genomes_project 12 28154500 28263672 + MGP_CASTEiJ_P0034320 Snx13 protein_coding protein_coding MGP_CASTEiJ_T0034321.1 MGP_CASTEiJ_G0018985.1 mouse_genomes_project 12 28154511 28244291 + MGP_CASTEiJ_P0034321 Snx13 protein_coding protein_coding MGP_CASTEiJ_T0006241.1 MGP_CASTEiJ_G0005213.1 mouse_genomes_project 12 23347689 23351944 - Gm28806 lincRNA lincRNA MGP_CASTEiJ_T0003263.1 MGP_CASTEiJ_G0003014.1 mouse_genomes_project 12 47950 54042 + Rab10os antisense antisense MGP_CASTEiJ_T0003264.1 MGP_CASTEiJ_G0003014.1 mouse_genomes_project 12 47972 50722 + Rab10os antisense antisense MGP_CASTEiJ_T0003265.1 MGP_CASTEiJ_G0003014.1 mouse_genomes_project 12 47972 63362 + Rab10os antisense antisense MGP_CASTEiJ_T0003266.1 MGP_CASTEiJ_G0003014.1 mouse_genomes_project 12 48236 63361 + Rab10os antisense antisense MGP_CASTEiJ_T0003267.1 MGP_CASTEiJ_G0003014.1 mouse_genomes_project 12 48277 51683 + Rab10os antisense antisense MGP_CASTEiJ_T0003268.1 MGP_CASTEiJ_G0003014.1 mouse_genomes_project 12 48360 62929 + Rab10os antisense antisense MGP_CASTEiJ_T0003269.1 MGP_CASTEiJ_G0003014.1 mouse_genomes_project 12 49055 62984 + Rab10os antisense antisense MGP_CASTEiJ_T0000245.1 MGP_CASTEiJ_G0000194.1 mouse_genomes_project 12 111464775 111465207 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0006272.1 MGP_CASTEiJ_G0005238.1 mouse_genomes_project 12 82210498 82211663 - Gm26698 lincRNA lincRNA MGP_CASTEiJ_T0034596.1 MGP_CASTEiJ_G0019086.1 mouse_genomes_project 12 63517682 63543750 - MGP_CASTEiJ_P0034596 Pole2 protein_coding protein_coding MGP_CASTEiJ_T0035210.1 MGP_CASTEiJ_G0019281.1 mouse_genomes_project 12 82838754 82844704 + MGP_CASTEiJ_P0035210 Slirp protein_coding protein_coding MGP_CASTEiJ_T0035211.1 MGP_CASTEiJ_G0019281.1 mouse_genomes_project 12 82838760 82844730 + MGP_CASTEiJ_P0035211 Slirp protein_coding protein_coding MGP_CASTEiJ_T0000224.1 MGP_CASTEiJ_G0000173.1 mouse_genomes_project 12 110604071 110604484 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0034032.1 MGP_CASTEiJ_G0018888.1 mouse_genomes_project 12 5570614 5572835 - MGP_CASTEiJ_P0034032 Rhob protein_coding protein_coding MGP_CASTEiJ_T0034787.1 MGP_CASTEiJ_G0019150.1 mouse_genomes_project 12 71048636 71060559 - MGP_CASTEiJ_P0034787 Zbtb25 protein_coding protein_coding MGP_CASTEiJ_T0034788.1 MGP_CASTEiJ_G0019150.1 mouse_genomes_project 12 71051081 71072585 - MGP_CASTEiJ_P0034788 Zbtb25 protein_coding protein_coding MGP_CASTEiJ_T0034789.1 MGP_CASTEiJ_G0019150.1 mouse_genomes_project 12 71051125 71072120 - MGP_CASTEiJ_P0034789 Zbtb25 protein_coding protein_coding MGP_CASTEiJ_T0034790.1 MGP_CASTEiJ_G0019150.1 mouse_genomes_project 12 71051126 71072723 - MGP_CASTEiJ_P0034790 Zbtb25 protein_coding protein_coding MGP_CASTEiJ_T0034791.1 MGP_CASTEiJ_G0019150.1 mouse_genomes_project 12 71052207 71072514 - MGP_CASTEiJ_P0034791 Zbtb25 protein_coding protein_coding MGP_CASTEiJ_T0034792.1 MGP_CASTEiJ_G0019150.1 mouse_genomes_project 12 71052324 71072585 - MGP_CASTEiJ_P0034792 Zbtb25 protein_coding protein_coding MGP_CASTEiJ_T0012486.1 MGP_CASTEiJ_G0010649.1 mouse_genomes_project 12 97638411 97638882 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003288.1 MGP_CASTEiJ_G0003030.1 mouse_genomes_project 12 64138903 64143113 + 4930512B01Rik antisense antisense MGP_CASTEiJ_T0003289.1 MGP_CASTEiJ_G0003030.1 mouse_genomes_project 12 64138950 64190591 + 4930512B01Rik antisense antisense MGP_CASTEiJ_T0035566.1 MGP_CASTEiJ_G0019394.1 mouse_genomes_project 12 105279063 105284835 + MGP_CASTEiJ_P0035566 Slc25a47 protein_coding protein_coding MGP_CASTEiJ_T0098492.1 MGP_CASTEiJ_G0035423.1 mouse_genomes_project 12 116098716 116098834 - Gm25675 rRNA rRNA MGP_CASTEiJ_T0034171.1 MGP_CASTEiJ_G0018934.1 mouse_genomes_project 12 17299042 17320441 - MGP_CASTEiJ_P0034171 Cys1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034172.1 MGP_CASTEiJ_G0018934.1 mouse_genomes_project 12 17299052 17320423 - MGP_CASTEiJ_P0034172 Cys1 protein_coding protein_coding MGP_CASTEiJ_T0034173.1 MGP_CASTEiJ_G0018934.1 mouse_genomes_project 12 17299052 17320423 - MGP_CASTEiJ_P0034173 Cys1 protein_coding protein_coding MGP_CASTEiJ_T0034174.1 MGP_CASTEiJ_G0018934.1 mouse_genomes_project 12 17299157 17319653 - MGP_CASTEiJ_P0034174 Cys1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034175.1 MGP_CASTEiJ_G0018934.1 mouse_genomes_project 12 17299157 17319653 - MGP_CASTEiJ_P0034175 Cys1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034176.1 MGP_CASTEiJ_G0018934.1 mouse_genomes_project 12 17299758 17318572 - Cys1 protein_coding processed_transcript MGP_CASTEiJ_T0034177.1 MGP_CASTEiJ_G0018934.1 mouse_genomes_project 12 17299894 17319579 - MGP_CASTEiJ_P0034177 Cys1 protein_coding protein_coding MGP_CASTEiJ_T0034178.1 MGP_CASTEiJ_G0018934.1 mouse_genomes_project 12 17301688 17319349 - MGP_CASTEiJ_P0034178 Cys1 protein_coding protein_coding MGP_CASTEiJ_T0006266.1 MGP_CASTEiJ_G0005232.1 mouse_genomes_project 12 75665141 75668003 + Gm26796 lincRNA lincRNA MGP_CASTEiJ_T0012444.1 MGP_CASTEiJ_G0010607.1 mouse_genomes_project 12 43394783 43395778 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034793.1 MGP_CASTEiJ_G0019151.1 mouse_genomes_project 12 71073356 71100979 + MGP_CASTEiJ_P0034793 Zbtb1 protein_coding protein_coding MGP_CASTEiJ_T0016562.1 MGP_CASTEiJ_G0014546.1 mouse_genomes_project 12 76495845 76497183 - Gm17191 processed_transcript processed_transcript MGP_CASTEiJ_T0102020.1 MGP_CASTEiJ_G0038745.1 mouse_genomes_project 12 42516941 42519170 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0034842.1 MGP_CASTEiJ_G0019173.1 mouse_genomes_project 12 73964197 73980917 - MGP_CASTEiJ_P0034842 Vti1b protein_coding protein_coding MGP_CASTEiJ_T0034843.1 MGP_CASTEiJ_G0019173.1 mouse_genomes_project 12 73964350 73980698 - MGP_CASTEiJ_P0034843 Vti1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034844.1 MGP_CASTEiJ_G0019173.1 mouse_genomes_project 12 73964509 73973353 - MGP_CASTEiJ_P0034844 Vti1b protein_coding protein_coding MGP_CASTEiJ_T0034845.1 MGP_CASTEiJ_G0019173.1 mouse_genomes_project 12 73964697 73974580 - MGP_CASTEiJ_P0034845 Vti1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000824.1 MGP_CASTEiJ_G0000764.1 mouse_genomes_project 12 78144777 78145577 - TEC TEC MGP_CASTEiJ_T0000080.1 MGP_CASTEiJ_G0000064.1 mouse_genomes_project 12 110872797 110873096 - MGP_CASTEiJ_P0000080 Ighv3-5 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000081.1 MGP_CASTEiJ_G0000064.1 mouse_genomes_project 12 110872797 110873234 - MGP_CASTEiJ_P0000081 Ighv3-5 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000095.1 MGP_CASTEiJ_G0000074.1 mouse_genomes_project 12 111121941 111122381 - MGP_CASTEiJ_P0000095 Ighv8-2 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034314.1 MGP_CASTEiJ_G0018981.1 mouse_genomes_project 12 27012817 27014964 + MGP_CASTEiJ_P0034314 Twist1 protein_coding protein_coding MGP_CASTEiJ_T0035390.1 MGP_CASTEiJ_G0019326.1 mouse_genomes_project 12 98539402 98557396 - MGP_CASTEiJ_P0035390 Gm20604 protein_coding protein_coding MGP_CASTEiJ_T0034635.1 MGP_CASTEiJ_G0019101.1 mouse_genomes_project 12 64366665 64463898 - MGP_CASTEiJ_P0034635 Nin protein_coding protein_coding MGP_CASTEiJ_T0034636.1 MGP_CASTEiJ_G0019101.1 mouse_genomes_project 12 64373990 64463919 - MGP_CASTEiJ_P0034636 Nin protein_coding protein_coding MGP_CASTEiJ_T0034637.1 MGP_CASTEiJ_G0019101.1 mouse_genomes_project 12 64373991 64473937 - MGP_CASTEiJ_P0034637 Nin protein_coding protein_coding MGP_CASTEiJ_T0034638.1 MGP_CASTEiJ_G0019101.1 mouse_genomes_project 12 64374011 64473932 - MGP_CASTEiJ_P0034638 Nin protein_coding protein_coding MGP_CASTEiJ_T0034639.1 MGP_CASTEiJ_G0019101.1 mouse_genomes_project 12 64384851 64473530 - MGP_CASTEiJ_P0034639 Nin protein_coding unknown_likely_coding MGP_CASTEiJ_T0102024.1 MGP_CASTEiJ_G0038749.1 mouse_genomes_project 12 99520967 99524829 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000064.1 MGP_CASTEiJ_G0000052.1 mouse_genomes_project 12 110451380 110477317 - MGP_CASTEiJ_P0000064 IG_V_gene IG_V_gene MGP_CASTEiJ_T0035035.1 MGP_CASTEiJ_G0019227.1 mouse_genomes_project 12 79492086 79527329 - MGP_CASTEiJ_P0035035 Entpd5 protein_coding protein_coding MGP_CASTEiJ_T0035036.1 MGP_CASTEiJ_G0019227.1 mouse_genomes_project 12 79492086 79527329 - MGP_CASTEiJ_P0035036 Entpd5 protein_coding protein_coding MGP_CASTEiJ_T0035037.1 MGP_CASTEiJ_G0019227.1 mouse_genomes_project 12 79492104 79530861 - MGP_CASTEiJ_P0035037 Entpd5 protein_coding protein_coding MGP_CASTEiJ_T0035038.1 MGP_CASTEiJ_G0019227.1 mouse_genomes_project 12 79492107 79530846 - MGP_CASTEiJ_P0035038 Entpd5 protein_coding protein_coding MGP_CASTEiJ_T0035039.1 MGP_CASTEiJ_G0019227.1 mouse_genomes_project 12 79494908 79523424 - MGP_CASTEiJ_P0035039 Entpd5 protein_coding protein_coding MGP_CASTEiJ_T0035040.1 MGP_CASTEiJ_G0019227.1 mouse_genomes_project 12 79495240 79523375 - MGP_CASTEiJ_P0035040 Entpd5 protein_coding protein_coding MGP_CASTEiJ_T0035041.1 MGP_CASTEiJ_G0019227.1 mouse_genomes_project 12 79498584 79506679 - Entpd5 protein_coding retained_intron MGP_CASTEiJ_T0035042.1 MGP_CASTEiJ_G0019227.1 mouse_genomes_project 12 79525701 79530816 - Entpd5 protein_coding processed_transcript MGP_CASTEiJ_T0034112.1 MGP_CASTEiJ_G0018917.1 mouse_genomes_project 12 14344398 14355749 - Pqlc3 protein_coding retained_intron MGP_CASTEiJ_T0034113.1 MGP_CASTEiJ_G0018917.1 mouse_genomes_project 12 14344398 14355835 - MGP_CASTEiJ_P0034113 Pqlc3 protein_coding protein_coding MGP_CASTEiJ_T0034114.1 MGP_CASTEiJ_G0018917.1 mouse_genomes_project 12 14348673 14355742 - MGP_CASTEiJ_P0034114 Pqlc3 protein_coding protein_coding MGP_CASTEiJ_T0034115.1 MGP_CASTEiJ_G0018917.1 mouse_genomes_project 12 14349226 14355743 - Pqlc3 protein_coding processed_transcript MGP_CASTEiJ_T0034116.1 MGP_CASTEiJ_G0018917.1 mouse_genomes_project 12 14349371 14355833 - MGP_CASTEiJ_P0034116 Pqlc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034117.1 MGP_CASTEiJ_G0018917.1 mouse_genomes_project 12 14351358 14356125 - Pqlc3 protein_coding processed_transcript MGP_CASTEiJ_T0034118.1 MGP_CASTEiJ_G0018917.1 mouse_genomes_project 12 14351358 14356125 - Pqlc3 protein_coding processed_transcript MGP_CASTEiJ_T0009572.1 MGP_CASTEiJ_G0007760.1 mouse_genomes_project 12 101989230 101989300 - Gm22120 miRNA miRNA MGP_CASTEiJ_T0006257.1 MGP_CASTEiJ_G0005227.1 mouse_genomes_project 12 68860712 68874268 + lincRNA lincRNA MGP_CASTEiJ_T0006258.1 MGP_CASTEiJ_G0005227.1 mouse_genomes_project 12 68860720 68874282 + lincRNA lincRNA MGP_CASTEiJ_T0006259.1 MGP_CASTEiJ_G0005227.1 mouse_genomes_project 12 68865166 68874282 + lincRNA lincRNA MGP_CASTEiJ_T0034111.1 MGP_CASTEiJ_G0018916.1 mouse_genomes_project 12 14244656 14344025 + MGP_CASTEiJ_P0034111 Rock2 protein_coding protein_coding MGP_CASTEiJ_T0000827.1 MGP_CASTEiJ_G0000767.1 mouse_genomes_project 12 81311196 81311803 + TEC TEC MGP_CASTEiJ_T0035084.1 MGP_CASTEiJ_G0019243.1 mouse_genomes_project 12 80263940 80276867 - MGP_CASTEiJ_P0035084 Prox2 protein_coding protein_coding MGP_CASTEiJ_T0035085.1 MGP_CASTEiJ_G0019243.1 mouse_genomes_project 12 80264369 80287009 - MGP_CASTEiJ_P0035085 Prox2 protein_coding protein_coding MGP_CASTEiJ_T0035086.1 MGP_CASTEiJ_G0019243.1 mouse_genomes_project 12 80273809 80275402 - Prox2 protein_coding retained_intron MGP_CASTEiJ_T0034460.1 MGP_CASTEiJ_G0019037.1 mouse_genomes_project 12 48734262 48734634 - MGP_CASTEiJ_P0034460 Gm20403 protein_coding protein_coding MGP_CASTEiJ_T0035509.1 MGP_CASTEiJ_G0019379.1 mouse_genomes_project 12 101813776 101900880 + MGP_CASTEiJ_P0035509 Ak7 protein_coding protein_coding MGP_CASTEiJ_T0000063.1 MGP_CASTEiJ_G0000051.1 mouse_genomes_project 12 110451380 110477239 - MGP_CASTEiJ_P0000063 Ighv5-12-4 IG_V_gene IG_V_gene MGP_CASTEiJ_T0009651.1 MGP_CASTEiJ_G0007839.1 mouse_genomes_project 12 111129009 111129069 - Mir7094-2 miRNA miRNA MGP_CASTEiJ_T0000099.1 MGP_CASTEiJ_G0000078.1 mouse_genomes_project 12 111152829 111153300 - MGP_CASTEiJ_P0000099 Ighv1-7 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034737.1 MGP_CASTEiJ_G0019133.1 mouse_genomes_project 12 68087466 68090748 - MGP_CASTEiJ_P0034737 Tmem30b protein_coding protein_coding MGP_CASTEiJ_T0098471.1 MGP_CASTEiJ_G0035402.1 mouse_genomes_project 12 1252359 1252473 + Gm23756 rRNA rRNA MGP_CASTEiJ_T0035447.1 MGP_CASTEiJ_G0019345.1 mouse_genomes_project 12 99489933 99497261 - MGP_CASTEiJ_P0035447 Serpina16 protein_coding protein_coding MGP_CASTEiJ_T0035448.1 MGP_CASTEiJ_G0019345.1 mouse_genomes_project 12 99490023 99496584 - MGP_CASTEiJ_P0035448 Serpina16 protein_coding protein_coding MGP_CASTEiJ_T0035480.1 MGP_CASTEiJ_G0019362.1 mouse_genomes_project 12 100470778 100473829 + MGP_CASTEiJ_P0035480 Gm1000 protein_coding protein_coding MGP_CASTEiJ_T0034464.1 MGP_CASTEiJ_G0019039.1 mouse_genomes_project 12 48860081 48894903 + MGP_CASTEiJ_P0034464 protein_coding protein_coding MGP_CASTEiJ_T0000818.1 MGP_CASTEiJ_G0000758.1 mouse_genomes_project 12 40748185 40748647 + TEC TEC MGP_CASTEiJ_T0009605.1 MGP_CASTEiJ_G0007793.1 mouse_genomes_project 12 106178764 106178850 + Mir323 miRNA miRNA MGP_CASTEiJ_T0034316.1 MGP_CASTEiJ_G0018982.1 mouse_genomes_project 12 27439495 27608603 - MGP_CASTEiJ_P0034316 Hdac9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034317.1 MGP_CASTEiJ_G0018982.1 mouse_genomes_project 12 27439508 27608547 - MGP_CASTEiJ_P0034317 Hdac9 protein_coding protein_coding MGP_CASTEiJ_T0006302.1 MGP_CASTEiJ_G0005263.1 mouse_genomes_project 12 104064704 104104420 - Gm15208 lincRNA lincRNA MGP_CASTEiJ_T0100489.1 MGP_CASTEiJ_G0037402.1 mouse_genomes_project 12 14963754 14963890 + Gm22748 snoRNA snoRNA MGP_CASTEiJ_T0035438.1 MGP_CASTEiJ_G0019342.1 mouse_genomes_project 12 99352506 99437348 + MGP_CASTEiJ_P0035438 Ppp4r4 protein_coding protein_coding MGP_CASTEiJ_T0035439.1 MGP_CASTEiJ_G0019342.1 mouse_genomes_project 12 99352775 99436420 + MGP_CASTEiJ_P0035439 Ppp4r4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035440.1 MGP_CASTEiJ_G0019342.1 mouse_genomes_project 12 99379682 99436582 + MGP_CASTEiJ_P0035440 Ppp4r4 protein_coding protein_coding MGP_CASTEiJ_T0035441.1 MGP_CASTEiJ_G0019342.1 mouse_genomes_project 12 99403858 99415168 + MGP_CASTEiJ_P0035441 Ppp4r4 protein_coding protein_coding MGP_CASTEiJ_T0035442.1 MGP_CASTEiJ_G0019342.1 mouse_genomes_project 12 99421691 99426381 + MGP_CASTEiJ_P0035442 Ppp4r4 protein_coding protein_coding MGP_CASTEiJ_T0034853.1 MGP_CASTEiJ_G0019176.1 mouse_genomes_project 12 74053823 74118628 - MGP_CASTEiJ_P0034853 Zfyve26 protein_coding protein_coding MGP_CASTEiJ_T0009637.1 MGP_CASTEiJ_G0007825.1 mouse_genomes_project 12 106209350 106209429 + Mir409 miRNA miRNA MGP_CASTEiJ_T0006235.1 MGP_CASTEiJ_G0005210.1 mouse_genomes_project 12 19910115 19929691 - Gm9866 lincRNA lincRNA MGP_CASTEiJ_T0006236.1 MGP_CASTEiJ_G0005210.1 mouse_genomes_project 12 19910121 19930013 - Gm9866 lincRNA lincRNA MGP_CASTEiJ_T0006237.1 MGP_CASTEiJ_G0005210.1 mouse_genomes_project 12 19911218 19929826 - Gm9866 lincRNA lincRNA MGP_CASTEiJ_T0006238.1 MGP_CASTEiJ_G0005210.1 mouse_genomes_project 12 19914737 19929842 - Gm9866 lincRNA lincRNA MGP_CASTEiJ_T0000033.1 MGP_CASTEiJ_G0000027.1 mouse_genomes_project 12 110182406 110182416 - IG_D_pseudogene IG_D_pseudogene MGP_CASTEiJ_T0100532.1 MGP_CASTEiJ_G0037445.1 mouse_genomes_project 12 106102770 106109551 + Gm24895 snoRNA snoRNA MGP_CASTEiJ_T0000231.1 MGP_CASTEiJ_G0000180.1 mouse_genomes_project 12 110877780 110878074 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0009600.1 MGP_CASTEiJ_G0007788.1 mouse_genomes_project 12 106176894 106176957 + Mir299a miRNA miRNA MGP_CASTEiJ_T0034203.1 MGP_CASTEiJ_G0018947.1 mouse_genomes_project 12 21457523 21467498 + MGP_CASTEiJ_P0034203 Rnaseh1 protein_coding protein_coding MGP_CASTEiJ_T0000100.1 MGP_CASTEiJ_G0000079.1 mouse_genomes_project 12 111192189 111192623 + MGP_CASTEiJ_P0000100 Ighv1-4 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034827.1 MGP_CASTEiJ_G0019164.1 mouse_genomes_project 12 73477876 73521997 + MGP_CASTEiJ_P0034827 Fam71d protein_coding protein_coding MGP_CASTEiJ_T0012488.1 MGP_CASTEiJ_G0010651.1 mouse_genomes_project 12 100162611 100163697 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000132.1 MGP_CASTEiJ_G0000100.1 mouse_genomes_project 12 112070275 112070725 - MGP_CASTEiJ_P0000132 IG_V_gene IG_V_gene MGP_CASTEiJ_T0035445.1 MGP_CASTEiJ_G0019344.1 mouse_genomes_project 12 99465248 99475871 - MGP_CASTEiJ_P0035445 Serpina6 protein_coding protein_coding MGP_CASTEiJ_T0035446.1 MGP_CASTEiJ_G0019344.1 mouse_genomes_project 12 99473041 99475761 - MGP_CASTEiJ_P0035446 Serpina6 protein_coding protein_coding MGP_CASTEiJ_T0009629.1 MGP_CASTEiJ_G0007817.1 mouse_genomes_project 12 106200946 106201012 + Mir668 miRNA miRNA MGP_CASTEiJ_T0098487.1 MGP_CASTEiJ_G0035418.1 mouse_genomes_project 12 86386411 86386528 + n-R5s65 rRNA rRNA MGP_CASTEiJ_T0035043.1 MGP_CASTEiJ_G0019228.1 mouse_genomes_project 12 79530902 79555250 + MGP_CASTEiJ_P0035043 Bbof1 protein_coding protein_coding MGP_CASTEiJ_T0035044.1 MGP_CASTEiJ_G0019228.1 mouse_genomes_project 12 79535124 79549919 + MGP_CASTEiJ_P0035044 Bbof1 protein_coding protein_coding MGP_CASTEiJ_T0035046.1 MGP_CASTEiJ_G0019228.1 mouse_genomes_project 12 79541722 79551852 + MGP_CASTEiJ_P0035046 Bbof1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035629.1 MGP_CASTEiJ_G0019410.1 mouse_genomes_project 12 107526303 107606277 + MGP_CASTEiJ_P0035629 Rcor1 protein_coding protein_coding MGP_CASTEiJ_T0034865.1 MGP_CASTEiJ_G0019185.1 mouse_genomes_project 12 75594409 75626315 + MGP_CASTEiJ_P0034865 Plekhd1 protein_coding protein_coding MGP_CASTEiJ_T0034866.1 MGP_CASTEiJ_G0019185.1 mouse_genomes_project 12 75594584 75653501 + MGP_CASTEiJ_P0034866 Plekhd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034867.1 MGP_CASTEiJ_G0019185.1 mouse_genomes_project 12 75608605 75622794 + Plekhd1 protein_coding processed_transcript MGP_CASTEiJ_T0034868.1 MGP_CASTEiJ_G0019185.1 mouse_genomes_project 12 75622866 75624111 + MGP_CASTEiJ_P0034868 Plekhd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034869.1 MGP_CASTEiJ_G0019185.1 mouse_genomes_project 12 75623835 75625010 + Plekhd1 protein_coding retained_intron MGP_CASTEiJ_T0035590.1 MGP_CASTEiJ_G0019400.1 mouse_genomes_project 12 106771961 106773991 + MGP_CASTEiJ_P0035590 protein_coding protein_coding MGP_CASTEiJ_T0035591.1 MGP_CASTEiJ_G0019400.1 mouse_genomes_project 12 106772153 106773602 + MGP_CASTEiJ_P0035591 protein_coding protein_coding MGP_CASTEiJ_T0009545.1 MGP_CASTEiJ_G0007733.1 mouse_genomes_project 12 48374533 48374613 - Mir1892 miRNA miRNA MGP_CASTEiJ_T0035652.1 MGP_CASTEiJ_G0019418.1 mouse_genomes_project 12 107976101 107977314 - MGP_CASTEiJ_P0035652 Gm266 protein_coding protein_coding MGP_CASTEiJ_T0012484.1 MGP_CASTEiJ_G0010647.1 mouse_genomes_project 12 97375417 97375762 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011003.1 MGP_CASTEiJ_G0009191.1 mouse_genomes_project 12 82117849 82118151 + Gm25888 misc_RNA misc_RNA MGP_CASTEiJ_T0034695.1 MGP_CASTEiJ_G0019118.1 mouse_genomes_project 12 66537509 66629099 - MGP_CASTEiJ_P0034695 Ccdc175 protein_coding protein_coding MGP_CASTEiJ_T0012464.1 MGP_CASTEiJ_G0010627.1 mouse_genomes_project 12 68927988 68929879 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012475.1 MGP_CASTEiJ_G0010638.1 mouse_genomes_project 12 83111288 83112131 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035709.1 MGP_CASTEiJ_G0019438.1 mouse_genomes_project 12 109217657 109224518 + MGP_CASTEiJ_P0035709 Siva1 protein_coding protein_coding MGP_CASTEiJ_T0035710.1 MGP_CASTEiJ_G0019438.1 mouse_genomes_project 12 109217657 109224518 + MGP_CASTEiJ_P0035710 Siva1 protein_coding protein_coding MGP_CASTEiJ_T0034949.1 MGP_CASTEiJ_G0019206.1 mouse_genomes_project 12 78596759 78649583 - MGP_CASTEiJ_P0034949 Zfyve1 protein_coding protein_coding MGP_CASTEiJ_T0098491.1 MGP_CASTEiJ_G0035422.1 mouse_genomes_project 12 113710265 113710371 + Gm24741 rRNA rRNA MGP_CASTEiJ_T0035546.1 MGP_CASTEiJ_G0019388.1 mouse_genomes_project 12 104719689 104750547 + MGP_CASTEiJ_P0035546 Cyp46a1 protein_coding protein_coding MGP_CASTEiJ_T0009592.1 MGP_CASTEiJ_G0007780.1 mouse_genomes_project 12 106048121 106048183 + Mir136 miRNA miRNA MGP_CASTEiJ_T0035420.1 MGP_CASTEiJ_G0019337.1 mouse_genomes_project 12 99222745 99242651 + MGP_CASTEiJ_P0035420 Otub2 protein_coding protein_coding MGP_CASTEiJ_T0035421.1 MGP_CASTEiJ_G0019337.1 mouse_genomes_project 12 99222761 99242657 + MGP_CASTEiJ_P0035421 Otub2 protein_coding protein_coding MGP_CASTEiJ_T0035422.1 MGP_CASTEiJ_G0019337.1 mouse_genomes_project 12 99222829 99242657 + Otub2 protein_coding retained_intron MGP_CASTEiJ_T0035423.1 MGP_CASTEiJ_G0019337.1 mouse_genomes_project 12 99223048 99237509 + MGP_CASTEiJ_P0035423 Otub2 protein_coding protein_coding MGP_CASTEiJ_T0035424.1 MGP_CASTEiJ_G0019337.1 mouse_genomes_project 12 99226768 99242662 + MGP_CASTEiJ_P0035424 Otub2 protein_coding protein_coding MGP_CASTEiJ_T0035800.1 MGP_CASTEiJ_G0019469.1 mouse_genomes_project 12 114035981 114378985 - MGP_CASTEiJ_P0035800 Dnah11 protein_coding protein_coding MGP_CASTEiJ_T0035801.1 MGP_CASTEiJ_G0019469.1 mouse_genomes_project 12 114035981 114229694 - MGP_CASTEiJ_P0035801 Dnah11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035802.1 MGP_CASTEiJ_G0019469.1 mouse_genomes_project 12 114062073 114071844 - Dnah11 protein_coding retained_intron MGP_CASTEiJ_T0035803.1 MGP_CASTEiJ_G0019469.1 mouse_genomes_project 12 114062089 114072070 - Dnah11 protein_coding processed_transcript MGP_CASTEiJ_T0035804.1 MGP_CASTEiJ_G0019469.1 mouse_genomes_project 12 114171579 114378893 - MGP_CASTEiJ_P0035804 Dnah11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035020.1 MGP_CASTEiJ_G0019225.1 mouse_genomes_project 12 79461780 79480328 - MGP_CASTEiJ_P0035020 Fam161b protein_coding protein_coding MGP_CASTEiJ_T0035021.1 MGP_CASTEiJ_G0019225.1 mouse_genomes_project 12 79461786 79480316 - MGP_CASTEiJ_P0035021 Fam161b protein_coding protein_coding MGP_CASTEiJ_T0035022.1 MGP_CASTEiJ_G0019225.1 mouse_genomes_project 12 79462962 79480287 - Fam161b protein_coding retained_intron MGP_CASTEiJ_T0035023.1 MGP_CASTEiJ_G0019225.1 mouse_genomes_project 12 79464844 79473676 - Fam161b protein_coding retained_intron MGP_CASTEiJ_T0035500.1 MGP_CASTEiJ_G0019375.1 mouse_genomes_project 12 101660540 101694467 + MGP_CASTEiJ_P0035500 Bdkrb2 protein_coding protein_coding MGP_CASTEiJ_T0035501.1 MGP_CASTEiJ_G0019375.1 mouse_genomes_project 12 101690914 101696651 + MGP_CASTEiJ_P0035501 Bdkrb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035554.1 MGP_CASTEiJ_G0019390.1 mouse_genomes_project 12 104963657 105099654 + MGP_CASTEiJ_P0035554 Evl protein_coding protein_coding MGP_CASTEiJ_T0035555.1 MGP_CASTEiJ_G0019390.1 mouse_genomes_project 12 104963657 105099654 + MGP_CASTEiJ_P0035555 Evl protein_coding protein_coding MGP_CASTEiJ_T0035556.1 MGP_CASTEiJ_G0019390.1 mouse_genomes_project 12 105011302 105099654 + MGP_CASTEiJ_P0035556 Evl protein_coding protein_coding MGP_CASTEiJ_T0035557.1 MGP_CASTEiJ_G0019390.1 mouse_genomes_project 12 105045742 105099654 + MGP_CASTEiJ_P0035557 Evl protein_coding protein_coding MGP_CASTEiJ_T0035631.1 MGP_CASTEiJ_G0019412.1 mouse_genomes_project 12 107656592 107729769 + MGP_CASTEiJ_P0035631 Traf3 protein_coding protein_coding MGP_CASTEiJ_T0035632.1 MGP_CASTEiJ_G0019412.1 mouse_genomes_project 12 107710057 107757585 + MGP_CASTEiJ_P0035632 Traf3 protein_coding protein_coding MGP_CASTEiJ_T0035633.1 MGP_CASTEiJ_G0019412.1 mouse_genomes_project 12 107710057 107757581 + MGP_CASTEiJ_P0035633 Traf3 protein_coding protein_coding MGP_CASTEiJ_T0035634.1 MGP_CASTEiJ_G0019412.1 mouse_genomes_project 12 107728252 107757590 + MGP_CASTEiJ_P0035634 Traf3 protein_coding protein_coding MGP_CASTEiJ_T0035635.1 MGP_CASTEiJ_G0019412.1 mouse_genomes_project 12 107739157 107753000 + Traf3 protein_coding retained_intron MGP_CASTEiJ_T0035639.1 MGP_CASTEiJ_G0019415.1 mouse_genomes_project 12 107889685 107895115 + MGP_CASTEiJ_P0035639 A230065H16Rik protein_coding protein_coding MGP_CASTEiJ_T0012490.1 MGP_CASTEiJ_G0010653.1 mouse_genomes_project 12 102713127 102714805 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000239.1 MGP_CASTEiJ_G0000188.1 mouse_genomes_project 12 111184014 111184312 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0012445.1 MGP_CASTEiJ_G0010608.1 mouse_genomes_project 12 44907225 44907699 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034235.1 MGP_CASTEiJ_G0018958.1 mouse_genomes_project 12 23791596 23850873 + Sh3yl1 protein_coding retained_intron MGP_CASTEiJ_T0034236.1 MGP_CASTEiJ_G0018958.1 mouse_genomes_project 12 23791596 23851017 + MGP_CASTEiJ_P0034236 Sh3yl1 protein_coding protein_coding MGP_CASTEiJ_T0034237.1 MGP_CASTEiJ_G0018958.1 mouse_genomes_project 12 23791620 23851006 + MGP_CASTEiJ_P0034237 Sh3yl1 protein_coding protein_coding MGP_CASTEiJ_T0034238.1 MGP_CASTEiJ_G0018958.1 mouse_genomes_project 12 23792115 23851011 + Sh3yl1 protein_coding processed_transcript MGP_CASTEiJ_T0034223.1 MGP_CASTEiJ_G0018954.1 mouse_genomes_project 12 23028508 23238233 - MGP_CASTEiJ_P0034223 Sntg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034224.1 MGP_CASTEiJ_G0018954.1 mouse_genomes_project 12 23028509 23238280 - MGP_CASTEiJ_P0034224 Sntg2 protein_coding protein_coding MGP_CASTEiJ_T0034225.1 MGP_CASTEiJ_G0018954.1 mouse_genomes_project 12 23029015 23238170 - MGP_CASTEiJ_P0034225 Sntg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034226.1 MGP_CASTEiJ_G0018954.1 mouse_genomes_project 12 23029020 23238233 - MGP_CASTEiJ_P0034226 Sntg2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034227.1 MGP_CASTEiJ_G0018954.1 mouse_genomes_project 12 23029100 23238162 - MGP_CASTEiJ_P0034227 Sntg2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034228.1 MGP_CASTEiJ_G0018954.1 mouse_genomes_project 12 23045036 23051308 - Sntg2 protein_coding retained_intron MGP_CASTEiJ_T0034229.1 MGP_CASTEiJ_G0018954.1 mouse_genomes_project 12 23125343 23221520 - Sntg2 protein_coding processed_transcript MGP_CASTEiJ_T0034230.1 MGP_CASTEiJ_G0018954.1 mouse_genomes_project 12 23170788 23238248 - Sntg2 protein_coding processed_transcript MGP_CASTEiJ_T0000234.1 MGP_CASTEiJ_G0000183.1 mouse_genomes_project 12 110934859 110935150 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0035090.1 MGP_CASTEiJ_G0019247.1 mouse_genomes_project 12 80406476 80413692 + MGP_CASTEiJ_P0035090 Eif2b2 protein_coding protein_coding MGP_CASTEiJ_T0035091.1 MGP_CASTEiJ_G0019247.1 mouse_genomes_project 12 80406499 80409870 + MGP_CASTEiJ_P0035091 Eif2b2 protein_coding protein_coding MGP_CASTEiJ_T0035092.1 MGP_CASTEiJ_G0019247.1 mouse_genomes_project 12 80406508 80413193 + MGP_CASTEiJ_P0035092 Eif2b2 protein_coding protein_coding MGP_CASTEiJ_T0035093.1 MGP_CASTEiJ_G0019247.1 mouse_genomes_project 12 80406510 80406945 + Eif2b2 protein_coding retained_intron MGP_CASTEiJ_T0035094.1 MGP_CASTEiJ_G0019247.1 mouse_genomes_project 12 80406541 80409857 + Eif2b2 protein_coding retained_intron MGP_CASTEiJ_T0035095.1 MGP_CASTEiJ_G0019247.1 mouse_genomes_project 12 80406577 80410519 + Eif2b2 protein_coding retained_intron MGP_CASTEiJ_T0035096.1 MGP_CASTEiJ_G0019247.1 mouse_genomes_project 12 80411556 80413557 + Eif2b2 protein_coding retained_intron MGP_CASTEiJ_T0035664.1 MGP_CASTEiJ_G0019424.1 mouse_genomes_project 12 108221430 108245425 + MGP_CASTEiJ_P0035664 Apopt1 protein_coding protein_coding MGP_CASTEiJ_T0035665.1 MGP_CASTEiJ_G0019424.1 mouse_genomes_project 12 108221449 108269206 + MGP_CASTEiJ_P0035665 Apopt1 protein_coding protein_coding MGP_CASTEiJ_T0035666.1 MGP_CASTEiJ_G0019424.1 mouse_genomes_project 12 108221449 108265669 + MGP_CASTEiJ_P0035666 Apopt1 protein_coding protein_coding MGP_CASTEiJ_T0035667.1 MGP_CASTEiJ_G0019424.1 mouse_genomes_project 12 108221453 108233232 + MGP_CASTEiJ_P0035667 Apopt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035668.1 MGP_CASTEiJ_G0019424.1 mouse_genomes_project 12 108221455 108237393 + MGP_CASTEiJ_P0035668 Apopt1 protein_coding protein_coding MGP_CASTEiJ_T0003304.1 MGP_CASTEiJ_G0003044.1 mouse_genomes_project 12 87249978 87258966 + Gm16876 antisense antisense MGP_CASTEiJ_T0034481.1 MGP_CASTEiJ_G0019048.1 mouse_genomes_project 12 49288598 49530121 - MGP_CASTEiJ_P0034481 Ralgapa1 protein_coding protein_coding MGP_CASTEiJ_T0034482.1 MGP_CASTEiJ_G0019048.1 mouse_genomes_project 12 49288598 49530121 - MGP_CASTEiJ_P0034482 Ralgapa1 protein_coding protein_coding MGP_CASTEiJ_T0034483.1 MGP_CASTEiJ_G0019048.1 mouse_genomes_project 12 49299246 49529721 - MGP_CASTEiJ_P0034483 Ralgapa1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0000079.1 MGP_CASTEiJ_G0000063.1 mouse_genomes_project 12 110863844 110864279 - MGP_CASTEiJ_P0000079 Ighv3-4 IG_V_gene IG_V_gene MGP_CASTEiJ_T0100521.1 MGP_CASTEiJ_G0037434.1 mouse_genomes_project 12 77770453 77770590 - Gm22149 snoRNA snoRNA MGP_CASTEiJ_T0009621.1 MGP_CASTEiJ_G0007809.1 mouse_genomes_project 12 106193001 106193076 + Mir381 miRNA miRNA MGP_CASTEiJ_T0034319.1 MGP_CASTEiJ_G0018984.1 mouse_genomes_project 12 28092406 28094080 + MGP_CASTEiJ_P0034319 Prps1l1 protein_coding protein_coding MGP_CASTEiJ_T0006273.1 MGP_CASTEiJ_G0005239.1 mouse_genomes_project 12 82714483 82717430 + Gm26764 lincRNA lincRNA MGP_CASTEiJ_T0034712.1 MGP_CASTEiJ_G0019125.1 mouse_genomes_project 12 67367420 67410383 - MGP_CASTEiJ_P0034712 protein_coding protein_coding MGP_CASTEiJ_T0034713.1 MGP_CASTEiJ_G0019125.1 mouse_genomes_project 12 67383929 67399253 - MGP_CASTEiJ_P0034713 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034714.1 MGP_CASTEiJ_G0019125.1 mouse_genomes_project 12 67383983 67399449 - protein_coding retained_intron MGP_CASTEiJ_T0034715.1 MGP_CASTEiJ_G0019125.1 mouse_genomes_project 12 67384037 67399247 - protein_coding processed_transcript MGP_CASTEiJ_T0034716.1 MGP_CASTEiJ_G0019125.1 mouse_genomes_project 12 67402321 67410434 - MGP_CASTEiJ_P0034716 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034717.1 MGP_CASTEiJ_G0019125.1 mouse_genomes_project 12 67404259 67435835 - MGP_CASTEiJ_P0034717 protein_coding protein_coding MGP_CASTEiJ_T0034718.1 MGP_CASTEiJ_G0019125.1 mouse_genomes_project 12 67405784 67431141 - MGP_CASTEiJ_P0034718 protein_coding protein_coding MGP_CASTEiJ_T0034719.1 MGP_CASTEiJ_G0019125.1 mouse_genomes_project 12 67405788 67435144 - MGP_CASTEiJ_P0034719 protein_coding protein_coding MGP_CASTEiJ_T0009570.1 MGP_CASTEiJ_G0007758.1 mouse_genomes_project 12 98799293 98799428 + Gm44324 miRNA miRNA MGP_CASTEiJ_T0006279.1 MGP_CASTEiJ_G0005245.1 mouse_genomes_project 12 95525653 95527576 - 1700064M15Rik lincRNA lincRNA MGP_CASTEiJ_T0012480.1 MGP_CASTEiJ_G0010643.1 mouse_genomes_project 12 87550729 87551906 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010997.1 MGP_CASTEiJ_G0009185.1 mouse_genomes_project 12 63467780 63468080 + Rn7s1 misc_RNA misc_RNA MGP_CASTEiJ_T0000086.1 MGP_CASTEiJ_G0000067.1 mouse_genomes_project 12 110931420 110931892 - MGP_CASTEiJ_P0000086 Ighv3-8 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034687.1 MGP_CASTEiJ_G0019117.1 mouse_genomes_project 12 66521410 66530769 + MGP_CASTEiJ_P0034687 Jkamp protein_coding protein_coding MGP_CASTEiJ_T0034688.1 MGP_CASTEiJ_G0019117.1 mouse_genomes_project 12 66521610 66529917 + Jkamp protein_coding processed_transcript MGP_CASTEiJ_T0034689.1 MGP_CASTEiJ_G0019117.1 mouse_genomes_project 12 66521678 66537079 + MGP_CASTEiJ_P0034689 Jkamp protein_coding protein_coding MGP_CASTEiJ_T0034690.1 MGP_CASTEiJ_G0019117.1 mouse_genomes_project 12 66521678 66537679 + MGP_CASTEiJ_P0034690 Jkamp protein_coding protein_coding MGP_CASTEiJ_T0034691.1 MGP_CASTEiJ_G0019117.1 mouse_genomes_project 12 66521927 66545622 + MGP_CASTEiJ_P0034691 Jkamp protein_coding unknown_likely_coding MGP_CASTEiJ_T0034692.1 MGP_CASTEiJ_G0019117.1 mouse_genomes_project 12 66524994 66530769 + Jkamp protein_coding retained_intron MGP_CASTEiJ_T0034693.1 MGP_CASTEiJ_G0019117.1 mouse_genomes_project 12 66525533 66530643 + Jkamp protein_coding retained_intron MGP_CASTEiJ_T0034694.1 MGP_CASTEiJ_G0019117.1 mouse_genomes_project 12 66536010 66537075 + Jkamp protein_coding retained_intron MGP_CASTEiJ_T0099308.1 MGP_CASTEiJ_G0036221.1 mouse_genomes_project 12 54627398 54627505 + Gm23059 snRNA snRNA MGP_CASTEiJ_T0099332.1 MGP_CASTEiJ_G0036245.1 mouse_genomes_project 12 112590626 112590690 - Gm27649 snRNA snRNA MGP_CASTEiJ_T0034736.1 MGP_CASTEiJ_G0019132.1 mouse_genomes_project 12 67889454 67897082 - MGP_CASTEiJ_P0034736 D830013O20Rik protein_coding protein_coding MGP_CASTEiJ_T0035814.1 MGP_CASTEiJ_G0019475.1 mouse_genomes_project 12 116124807 116201996 + MGP_CASTEiJ_P0035814 Tmem196 protein_coding protein_coding MGP_CASTEiJ_T0035815.1 MGP_CASTEiJ_G0019475.1 mouse_genomes_project 12 116125259 116201597 + MGP_CASTEiJ_P0035815 Tmem196 protein_coding protein_coding MGP_CASTEiJ_T0035816.1 MGP_CASTEiJ_G0019475.1 mouse_genomes_project 12 116125273 116197668 + MGP_CASTEiJ_P0035816 Tmem196 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035817.1 MGP_CASTEiJ_G0019475.1 mouse_genomes_project 12 116125407 116201490 + MGP_CASTEiJ_P0035817 Tmem196 protein_coding protein_coding MGP_CASTEiJ_T0035818.1 MGP_CASTEiJ_G0019475.1 mouse_genomes_project 12 116125419 116201838 + MGP_CASTEiJ_P0035818 Tmem196 protein_coding protein_coding MGP_CASTEiJ_T0098742.1 MGP_CASTEiJ_G0035673.1 mouse_genomes_project 12 24784886 24785319 + Gm25913 scaRNA scaRNA MGP_CASTEiJ_T0009616.1 MGP_CASTEiJ_G0007804.1 mouse_genomes_project 12 106189389 106189473 + Mir654 miRNA miRNA MGP_CASTEiJ_T0006256.1 MGP_CASTEiJ_G0005226.1 mouse_genomes_project 12 65791265 65792309 - 1700083H02Rik lincRNA lincRNA MGP_CASTEiJ_T0006287.1 MGP_CASTEiJ_G0005252.1 mouse_genomes_project 12 102512451 102516084 + Gm17032 lincRNA lincRNA MGP_CASTEiJ_T0034385.1 MGP_CASTEiJ_G0019006.1 mouse_genomes_project 12 33834830 34256323 + MGP_CASTEiJ_P0034385 Dock4 protein_coding protein_coding MGP_CASTEiJ_T0034386.1 MGP_CASTEiJ_G0019006.1 mouse_genomes_project 12 34027107 34275452 + MGP_CASTEiJ_P0034386 Dock4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0000037.1 MGP_CASTEiJ_G0000031.1 mouse_genomes_project 12 110107051 110107099 - MGP_CASTEiJ_P0000037 Ighj3 IG_J_gene IG_J_gene MGP_CASTEiJ_T0099310.1 MGP_CASTEiJ_G0036223.1 mouse_genomes_project 12 57686857 57686964 + Gm24921 snRNA snRNA MGP_CASTEiJ_T0034336.1 MGP_CASTEiJ_G0018992.1 mouse_genomes_project 12 29386042 29398099 - MGP_CASTEiJ_P0034336 Lrrc72 protein_coding protein_coding MGP_CASTEiJ_T0034337.1 MGP_CASTEiJ_G0018992.1 mouse_genomes_project 12 29387172 29434614 - MGP_CASTEiJ_P0034337 Lrrc72 protein_coding protein_coding MGP_CASTEiJ_T0034338.1 MGP_CASTEiJ_G0018992.1 mouse_genomes_project 12 29389911 29398115 - Lrrc72 protein_coding retained_intron MGP_CASTEiJ_T0034026.1 MGP_CASTEiJ_G0018885.1 mouse_genomes_project 12 5258730 5344357 + MGP_CASTEiJ_P0034026 Ldah protein_coding protein_coding MGP_CASTEiJ_T0034027.1 MGP_CASTEiJ_G0018885.1 mouse_genomes_project 12 5258750 5344357 + MGP_CASTEiJ_P0034027 Ldah protein_coding protein_coding MGP_CASTEiJ_T0099312.1 MGP_CASTEiJ_G0036225.1 mouse_genomes_project 12 61893604 61893790 + Gm26256 snRNA snRNA MGP_CASTEiJ_T0035089.1 MGP_CASTEiJ_G0019246.1 mouse_genomes_project 12 80353258 80363559 - MGP_CASTEiJ_P0035089 Pgf protein_coding protein_coding MGP_CASTEiJ_T0034710.1 MGP_CASTEiJ_G0019123.1 mouse_genomes_project 12 67108129 67128566 - MGP_CASTEiJ_P0034710 Dhrs7 protein_coding protein_coding MGP_CASTEiJ_T0016573.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106056721 106060282 + Rian processed_transcript lincRNA MGP_CASTEiJ_T0016574.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106056726 106102037 + Rian processed_transcript lincRNA MGP_CASTEiJ_T0016575.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106056827 106082141 + Rian processed_transcript lincRNA MGP_CASTEiJ_T0016576.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106075400 106088570 + Rian processed_transcript lincRNA MGP_CASTEiJ_T0016577.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106075400 106109689 + Rian processed_transcript lincRNA MGP_CASTEiJ_T0016578.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106080210 106102103 + Rian processed_transcript lincRNA MGP_CASTEiJ_T0016579.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106087134 106090615 + Rian processed_transcript lincRNA MGP_CASTEiJ_T0016580.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106088292 106097773 + Rian processed_transcript lincRNA MGP_CASTEiJ_T0016581.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106088537 106109612 + Rian processed_transcript lincRNA MGP_CASTEiJ_T0016582.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106098250 106102084 + Rian processed_transcript TEC MGP_CASTEiJ_T0016583.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106102803 106118348 + Rian processed_transcript lincRNA MGP_CASTEiJ_T0016584.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106102924 106123129 + Rian processed_transcript lincRNA MGP_CASTEiJ_T0016585.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106106732 106107916 + Rian processed_transcript lincRNA MGP_CASTEiJ_T0016586.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106107633 106119208 + Rian processed_transcript lincRNA MGP_CASTEiJ_T0016587.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106108245 106124315 + Rian processed_transcript lincRNA MGP_CASTEiJ_T0016588.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106108249 106119229 + Rian processed_transcript lincRNA MGP_CASTEiJ_T0016589.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106108579 106123075 + Rian processed_transcript lincRNA MGP_CASTEiJ_T0016590.1 MGP_CASTEiJ_G0014554.1 mouse_genomes_project 12 106120610 106122452 + Rian processed_transcript TEC MGP_CASTEiJ_T0034871.1 MGP_CASTEiJ_G0019187.1 mouse_genomes_project 12 75696228 75804353 + MGP_CASTEiJ_P0034871 Susd6 protein_coding protein_coding MGP_CASTEiJ_T0009584.1 MGP_CASTEiJ_G0007772.1 mouse_genomes_project 12 106040998 106041087 + Mir3070a miRNA miRNA MGP_CASTEiJ_T0009547.1 MGP_CASTEiJ_G0007735.1 mouse_genomes_project 12 53103573 53103643 - Gm27284 miRNA miRNA MGP_CASTEiJ_T0016567.1 MGP_CASTEiJ_G0014549.1 mouse_genomes_project 12 95162354 95166461 - Gm20682 processed_transcript processed_transcript MGP_CASTEiJ_T0000235.1 MGP_CASTEiJ_G0000184.1 mouse_genomes_project 12 110951296 110951606 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0035104.1 MGP_CASTEiJ_G0019250.1 mouse_genomes_project 12 80479615 80490526 + MGP_CASTEiJ_P0035104 Zc2hc1c protein_coding protein_coding MGP_CASTEiJ_T0034067.1 MGP_CASTEiJ_G0018897.1 mouse_genomes_project 12 6741863 6750766 + MGP_CASTEiJ_P0034067 Osr1 protein_coding protein_coding MGP_CASTEiJ_T0000233.1 MGP_CASTEiJ_G0000182.1 mouse_genomes_project 12 110929125 110929420 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0035575.1 MGP_CASTEiJ_G0019397.1 mouse_genomes_project 12 105472132 105513426 - MGP_CASTEiJ_P0035575 Begain protein_coding protein_coding MGP_CASTEiJ_T0035576.1 MGP_CASTEiJ_G0019397.1 mouse_genomes_project 12 105474561 105476995 - Begain protein_coding retained_intron MGP_CASTEiJ_T0035577.1 MGP_CASTEiJ_G0019397.1 mouse_genomes_project 12 105477581 105495287 - Begain protein_coding processed_transcript MGP_CASTEiJ_T0009562.1 MGP_CASTEiJ_G0007750.1 mouse_genomes_project 12 82383178 82383334 + Gm25847 miRNA miRNA MGP_CASTEiJ_T0034970.1 MGP_CASTEiJ_G0019209.1 mouse_genomes_project 12 78813569 78844590 + MGP_CASTEiJ_P0034970 Papln protein_coding unknown_likely_coding MGP_CASTEiJ_T0034971.1 MGP_CASTEiJ_G0019209.1 mouse_genomes_project 12 78813624 78844966 + MGP_CASTEiJ_P0034971 Papln protein_coding protein_coding MGP_CASTEiJ_T0034972.1 MGP_CASTEiJ_G0019209.1 mouse_genomes_project 12 78813644 78844939 + MGP_CASTEiJ_P0034972 Papln protein_coding protein_coding MGP_CASTEiJ_T0034973.1 MGP_CASTEiJ_G0019209.1 mouse_genomes_project 12 78813652 78833175 + Papln protein_coding retained_intron MGP_CASTEiJ_T0034179.1 MGP_CASTEiJ_G0018935.1 mouse_genomes_project 12 17350069 17355253 + MGP_CASTEiJ_P0034179 Rrm2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034180.1 MGP_CASTEiJ_G0018935.1 mouse_genomes_project 12 17350195 17356092 + MGP_CASTEiJ_P0034180 Rrm2 protein_coding protein_coding MGP_CASTEiJ_T0034181.1 MGP_CASTEiJ_G0018935.1 mouse_genomes_project 12 17350510 17351544 + Rrm2 protein_coding retained_intron MGP_CASTEiJ_T0034182.1 MGP_CASTEiJ_G0018935.1 mouse_genomes_project 12 17350706 17353718 + MGP_CASTEiJ_P0034182 Rrm2 protein_coding protein_coding MGP_CASTEiJ_T0034183.1 MGP_CASTEiJ_G0018935.1 mouse_genomes_project 12 17350979 17355292 + MGP_CASTEiJ_P0034183 Rrm2 protein_coding protein_coding MGP_CASTEiJ_T0009577.1 MGP_CASTEiJ_G0007765.1 mouse_genomes_project 12 106014864 106014958 + Mir770 miRNA miRNA MGP_CASTEiJ_T0034832.1 MGP_CASTEiJ_G0019169.1 mouse_genomes_project 12 73766477 73814104 - MGP_CASTEiJ_P0034832 Tmem229b protein_coding protein_coding MGP_CASTEiJ_T0034833.1 MGP_CASTEiJ_G0019169.1 mouse_genomes_project 12 73766477 73786530 - MGP_CASTEiJ_P0034833 Tmem229b protein_coding protein_coding MGP_CASTEiJ_T0034834.1 MGP_CASTEiJ_G0019169.1 mouse_genomes_project 12 73766479 73783777 - MGP_CASTEiJ_P0034834 Tmem229b protein_coding protein_coding MGP_CASTEiJ_T0034835.1 MGP_CASTEiJ_G0019169.1 mouse_genomes_project 12 73766482 73813754 - MGP_CASTEiJ_P0034835 Tmem229b protein_coding protein_coding MGP_CASTEiJ_T0034836.1 MGP_CASTEiJ_G0019169.1 mouse_genomes_project 12 73776412 73783792 - Tmem229b protein_coding processed_transcript MGP_CASTEiJ_T0034837.1 MGP_CASTEiJ_G0019169.1 mouse_genomes_project 12 73780984 73813140 - Tmem229b protein_coding processed_transcript MGP_CASTEiJ_T0000221.1 MGP_CASTEiJ_G0000170.1 mouse_genomes_project 12 110486673 110487569 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0012438.1 MGP_CASTEiJ_G0010601.1 mouse_genomes_project 12 13027960 13028959 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034076.1 MGP_CASTEiJ_G0018901.1 mouse_genomes_project 12 8385287 8385854 - MGP_CASTEiJ_P0034076 Msgn1 protein_coding protein_coding MGP_CASTEiJ_T0034521.1 MGP_CASTEiJ_G0019062.1 mouse_genomes_project 12 52863837 52883440 + MGP_CASTEiJ_P0034521 Gemin2 protein_coding protein_coding MGP_CASTEiJ_T0034522.1 MGP_CASTEiJ_G0019062.1 mouse_genomes_project 12 52863898 52883369 + Gemin2 protein_coding retained_intron MGP_CASTEiJ_T0034523.1 MGP_CASTEiJ_G0019062.1 mouse_genomes_project 12 52879070 52882853 + Gemin2 protein_coding retained_intron MGP_CASTEiJ_T0006232.1 MGP_CASTEiJ_G0005207.1 mouse_genomes_project 12 10111807 10116322 + 4930519A11Rik lincRNA lincRNA MGP_CASTEiJ_T0035474.1 MGP_CASTEiJ_G0019358.1 mouse_genomes_project 12 100288721 100294974 + MGP_CASTEiJ_P0035474 Serpina3j protein_coding protein_coding MGP_CASTEiJ_T0012492.1 MGP_CASTEiJ_G0010655.1 mouse_genomes_project 12 103136743 103137224 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006303.1 MGP_CASTEiJ_G0005264.1 mouse_genomes_project 12 104696940 104713337 - 4930478K11Rik lincRNA lincRNA MGP_CASTEiJ_T0034362.1 MGP_CASTEiJ_G0019000.1 mouse_genomes_project 12 33381427 33414164 - MGP_CASTEiJ_P0034362 Arl4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034363.1 MGP_CASTEiJ_G0019000.1 mouse_genomes_project 12 33381427 33414173 - MGP_CASTEiJ_P0034363 Arl4a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034364.1 MGP_CASTEiJ_G0019000.1 mouse_genomes_project 12 33386340 33391203 - Arl4a protein_coding processed_transcript MGP_CASTEiJ_T0034365.1 MGP_CASTEiJ_G0019000.1 mouse_genomes_project 12 33410091 33414226 - MGP_CASTEiJ_P0034365 Arl4a protein_coding protein_coding MGP_CASTEiJ_T0034366.1 MGP_CASTEiJ_G0019000.1 mouse_genomes_project 12 33412625 33414815 - MGP_CASTEiJ_P0034366 Arl4a protein_coding protein_coding MGP_CASTEiJ_T0099314.1 MGP_CASTEiJ_G0036227.1 mouse_genomes_project 12 63915953 63916059 - Gm24449 snRNA snRNA MGP_CASTEiJ_T0016564.1 MGP_CASTEiJ_G0014548.1 mouse_genomes_project 12 87239889 87251382 - Gm8378 processed_transcript processed_transcript MGP_CASTEiJ_T0016565.1 MGP_CASTEiJ_G0014548.1 mouse_genomes_project 12 87247801 87251427 - Gm8378 processed_transcript processed_transcript MGP_CASTEiJ_T0016566.1 MGP_CASTEiJ_G0014548.1 mouse_genomes_project 12 87249779 87251427 - Gm8378 processed_transcript processed_transcript MGP_CASTEiJ_T0101731.1 MGP_CASTEiJ_G0038539.1 mouse_genomes_project 12 100188249 100216359 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0034997.1 MGP_CASTEiJ_G0019220.1 mouse_genomes_project 12 79208942 79236740 + Dnal1 protein_coding processed_transcript MGP_CASTEiJ_T0034998.1 MGP_CASTEiJ_G0019220.1 mouse_genomes_project 12 79208942 79241422 + MGP_CASTEiJ_P0034998 Dnal1 protein_coding protein_coding MGP_CASTEiJ_T0034999.1 MGP_CASTEiJ_G0019220.1 mouse_genomes_project 12 79208947 79235359 + MGP_CASTEiJ_P0034999 Dnal1 protein_coding protein_coding MGP_CASTEiJ_T0035000.1 MGP_CASTEiJ_G0019220.1 mouse_genomes_project 12 79208966 79237489 + MGP_CASTEiJ_P0035000 Dnal1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035001.1 MGP_CASTEiJ_G0019220.1 mouse_genomes_project 12 79208967 79229564 + MGP_CASTEiJ_P0035001 Dnal1 protein_coding protein_coding MGP_CASTEiJ_T0035002.1 MGP_CASTEiJ_G0019220.1 mouse_genomes_project 12 79222302 79245399 + Dnal1 protein_coding retained_intron MGP_CASTEiJ_T0035003.1 MGP_CASTEiJ_G0019220.1 mouse_genomes_project 12 79232579 79234058 + MGP_CASTEiJ_P0035003 Dnal1 protein_coding protein_coding MGP_CASTEiJ_T0099329.1 MGP_CASTEiJ_G0036242.1 mouse_genomes_project 12 105290497 105292214 - Gm22079 snRNA snRNA MGP_CASTEiJ_T0000244.1 MGP_CASTEiJ_G0000193.1 mouse_genomes_project 12 111459985 111460410 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0035687.1 MGP_CASTEiJ_G0019428.1 mouse_genomes_project 12 108357923 108440293 - MGP_CASTEiJ_P0035687 Ppp1r13b protein_coding protein_coding MGP_CASTEiJ_T0035688.1 MGP_CASTEiJ_G0019428.1 mouse_genomes_project 12 108397098 108440278 - MGP_CASTEiJ_P0035688 Ppp1r13b protein_coding protein_coding MGP_CASTEiJ_T0012463.1 MGP_CASTEiJ_G0010626.1 mouse_genomes_project 12 68527039 68527336 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034123.1 MGP_CASTEiJ_G0018920.1 mouse_genomes_project 12 14640016 14656238 + Pdia6 protein_coding retained_intron MGP_CASTEiJ_T0034124.1 MGP_CASTEiJ_G0018920.1 mouse_genomes_project 12 14640016 14659413 + MGP_CASTEiJ_P0034124 Pdia6 protein_coding protein_coding MGP_CASTEiJ_T0034125.1 MGP_CASTEiJ_G0018920.1 mouse_genomes_project 12 14640024 14659020 + MGP_CASTEiJ_P0034125 Pdia6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034126.1 MGP_CASTEiJ_G0018920.1 mouse_genomes_project 12 14640079 14647666 + Pdia6 protein_coding processed_transcript MGP_CASTEiJ_T0034127.1 MGP_CASTEiJ_G0018920.1 mouse_genomes_project 12 14647313 14652075 + Pdia6 protein_coding retained_intron MGP_CASTEiJ_T0034128.1 MGP_CASTEiJ_G0018920.1 mouse_genomes_project 12 14651668 14653368 + Pdia6 protein_coding processed_transcript MGP_CASTEiJ_T0009578.1 MGP_CASTEiJ_G0007766.1 mouse_genomes_project 12 106024852 106024943 + Mir673 miRNA miRNA MGP_CASTEiJ_T0009556.1 MGP_CASTEiJ_G0007744.1 mouse_genomes_project 12 71257087 71257166 - Mir5135 miRNA miRNA MGP_CASTEiJ_T0003275.1 MGP_CASTEiJ_G0003019.1 mouse_genomes_project 12 24377346 24378278 + Gm29542 antisense antisense MGP_CASTEiJ_T0009568.1 MGP_CASTEiJ_G0007756.1 mouse_genomes_project 12 97005223 97005319 - Mir1190 miRNA miRNA MGP_CASTEiJ_T0034241.1 MGP_CASTEiJ_G0018961.1 mouse_genomes_project 12 24149853 24217924 + MGP_CASTEiJ_P0034241 Lamb1 protein_coding protein_coding MGP_CASTEiJ_T0034242.1 MGP_CASTEiJ_G0018961.1 mouse_genomes_project 12 24149912 24218075 + MGP_CASTEiJ_P0034242 Lamb1 protein_coding protein_coding MGP_CASTEiJ_T0034243.1 MGP_CASTEiJ_G0018961.1 mouse_genomes_project 12 24149913 24153494 + Lamb1 protein_coding retained_intron MGP_CASTEiJ_T0034244.1 MGP_CASTEiJ_G0018961.1 mouse_genomes_project 12 24149916 24151426 + MGP_CASTEiJ_P0034244 Lamb1 protein_coding protein_coding MGP_CASTEiJ_T0034245.1 MGP_CASTEiJ_G0018961.1 mouse_genomes_project 12 24150018 24218006 + MGP_CASTEiJ_P0034245 Lamb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034246.1 MGP_CASTEiJ_G0018961.1 mouse_genomes_project 12 24163332 24174795 + Lamb1 protein_coding retained_intron MGP_CASTEiJ_T0034247.1 MGP_CASTEiJ_G0018961.1 mouse_genomes_project 12 24164849 24165614 + Lamb1 protein_coding retained_intron MGP_CASTEiJ_T0034248.1 MGP_CASTEiJ_G0018961.1 mouse_genomes_project 12 24211923 24212857 + Lamb1 protein_coding retained_intron MGP_CASTEiJ_T0099307.1 MGP_CASTEiJ_G0036220.1 mouse_genomes_project 12 52893462 52893653 + Gm22973 snRNA snRNA MGP_CASTEiJ_T0035574.1 MGP_CASTEiJ_G0019396.1 mouse_genomes_project 12 105323355 105468409 + MGP_CASTEiJ_P0035574 Wdr25 protein_coding unknown_likely_coding MGP_CASTEiJ_T0102029.1 MGP_CASTEiJ_G0038754.1 mouse_genomes_project 12 110043089 110044295 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100542.1 MGP_CASTEiJ_G0037455.1 mouse_genomes_project 12 106145336 106145411 + Gm23736 snoRNA snoRNA MGP_CASTEiJ_T0009554.1 MGP_CASTEiJ_G0007742.1 mouse_genomes_project 12 66933697 66933812 - Gm44392 miRNA miRNA MGP_CASTEiJ_T0035358.1 MGP_CASTEiJ_G0019317.1 mouse_genomes_project 12 97652932 97694877 - MGP_CASTEiJ_P0035358 Atxn3 protein_coding protein_coding MGP_CASTEiJ_T0035359.1 MGP_CASTEiJ_G0019317.1 mouse_genomes_project 12 97657354 97668595 - MGP_CASTEiJ_P0035359 Atxn3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035360.1 MGP_CASTEiJ_G0019317.1 mouse_genomes_project 12 97667160 97694924 - MGP_CASTEiJ_P0035360 Atxn3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035361.1 MGP_CASTEiJ_G0019317.1 mouse_genomes_project 12 97667162 97694874 - MGP_CASTEiJ_P0035361 Atxn3 protein_coding protein_coding MGP_CASTEiJ_T0035362.1 MGP_CASTEiJ_G0019317.1 mouse_genomes_project 12 97667164 97694874 - MGP_CASTEiJ_P0035362 Atxn3 protein_coding protein_coding MGP_CASTEiJ_T0035363.1 MGP_CASTEiJ_G0019317.1 mouse_genomes_project 12 97667187 97694779 - MGP_CASTEiJ_P0035363 Atxn3 protein_coding protein_coding MGP_CASTEiJ_T0034516.1 MGP_CASTEiJ_G0019061.1 mouse_genomes_project 12 52807718 52862483 - MGP_CASTEiJ_P0034516 Sec23a protein_coding protein_coding MGP_CASTEiJ_T0034517.1 MGP_CASTEiJ_G0019061.1 mouse_genomes_project 12 52809036 52857703 - MGP_CASTEiJ_P0034517 Sec23a protein_coding protein_coding MGP_CASTEiJ_T0034518.1 MGP_CASTEiJ_G0019061.1 mouse_genomes_project 12 52816020 52820418 - Sec23a protein_coding retained_intron MGP_CASTEiJ_T0034519.1 MGP_CASTEiJ_G0019061.1 mouse_genomes_project 12 52821893 52833057 - Sec23a protein_coding retained_intron MGP_CASTEiJ_T0034520.1 MGP_CASTEiJ_G0019061.1 mouse_genomes_project 12 52857121 52862483 - Sec23a protein_coding retained_intron MGP_CASTEiJ_T0034525.1 MGP_CASTEiJ_G0019064.1 mouse_genomes_project 12 52921742 52931180 + MGP_CASTEiJ_P0034525 Pnn protein_coding protein_coding MGP_CASTEiJ_T0035213.1 MGP_CASTEiJ_G0019283.1 mouse_genomes_project 12 83119147 83120062 - MGP_CASTEiJ_P0035213 Gm10264 protein_coding protein_coding MGP_CASTEiJ_T0035055.1 MGP_CASTEiJ_G0019235.1 mouse_genomes_project 12 79832869 79857769 - MGP_CASTEiJ_P0035055 Syndig1l protein_coding protein_coding MGP_CASTEiJ_T0035087.1 MGP_CASTEiJ_G0019244.1 mouse_genomes_project 12 80291370 80316752 + MGP_CASTEiJ_P0035087 Dlst protein_coding protein_coding MGP_CASTEiJ_T0003276.1 MGP_CASTEiJ_G0003020.1 mouse_genomes_project 12 26208139 26225236 - antisense antisense MGP_CASTEiJ_T0034750.1 MGP_CASTEiJ_G0019138.1 mouse_genomes_project 12 68875843 68878832 + MGP_CASTEiJ_P0034750 Dbpht2 protein_coding protein_coding MGP_CASTEiJ_T0102021.1 MGP_CASTEiJ_G0038746.1 mouse_genomes_project 12 42516971 42517211 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0035175.1 MGP_CASTEiJ_G0019270.1 mouse_genomes_project 12 82450698 82455910 - MGP_CASTEiJ_P0035175 Ngb protein_coding protein_coding MGP_CASTEiJ_T0035176.1 MGP_CASTEiJ_G0019270.1 mouse_genomes_project 12 82450698 82455893 - MGP_CASTEiJ_P0035176 Ngb protein_coding protein_coding MGP_CASTEiJ_T0035177.1 MGP_CASTEiJ_G0019270.1 mouse_genomes_project 12 82451187 82455721 - MGP_CASTEiJ_P0035177 Ngb protein_coding protein_coding MGP_CASTEiJ_T0100497.1 MGP_CASTEiJ_G0037410.1 mouse_genomes_project 12 32800251 32800378 + Gm24069 snoRNA snoRNA MGP_CASTEiJ_T0100493.1 MGP_CASTEiJ_G0037406.1 mouse_genomes_project 12 21134196 21134328 + Gm25564 snoRNA snoRNA MGP_CASTEiJ_T0034760.1 MGP_CASTEiJ_G0019143.1 mouse_genomes_project 12 70278512 70322900 - MGP_CASTEiJ_P0034760 Wdr89 protein_coding protein_coding MGP_CASTEiJ_T0000006.1 MGP_CASTEiJ_G0000005.1 mouse_genomes_project 12 109895531 109900948 - MGP_CASTEiJ_P0000006 Igha IG_C_gene IG_C_gene MGP_CASTEiJ_T0000007.1 MGP_CASTEiJ_G0000005.1 mouse_genomes_project 12 109899413 109900948 - MGP_CASTEiJ_P0000007 Igha IG_C_gene IG_C_gene MGP_CASTEiJ_T0034211.1 MGP_CASTEiJ_G0018950.1 mouse_genomes_project 12 21560857 21673011 + MGP_CASTEiJ_P0034211 Tssc1 protein_coding protein_coding MGP_CASTEiJ_T0035686.1 MGP_CASTEiJ_G0019427.1 mouse_genomes_project 12 108341995 108357854 + MGP_CASTEiJ_P0035686 Zfyve21 protein_coding protein_coding MGP_CASTEiJ_T0000070.1 MGP_CASTEiJ_G0000057.1 mouse_genomes_project 12 110677322 110677768 - MGP_CASTEiJ_P0000070 Ighv2-9 IG_V_gene IG_V_gene MGP_CASTEiJ_T0006269.1 MGP_CASTEiJ_G0005235.1 mouse_genomes_project 12 79120038 79138212 - 4732463B04Rik lincRNA lincRNA MGP_CASTEiJ_T0034149.1 MGP_CASTEiJ_G0018926.1 mouse_genomes_project 12 16130499 16160542 + MGP_CASTEiJ_P0034149 Cpsf3 protein_coding protein_coding MGP_CASTEiJ_T0009641.1 MGP_CASTEiJ_G0007829.1 mouse_genomes_project 12 106213786 106213869 + Mir3072 miRNA miRNA MGP_CASTEiJ_T0035531.1 MGP_CASTEiJ_G0019383.1 mouse_genomes_project 12 104248154 104350572 - MGP_CASTEiJ_P0035531 Bcl11b protein_coding protein_coding MGP_CASTEiJ_T0035532.1 MGP_CASTEiJ_G0019383.1 mouse_genomes_project 12 104252960 104350384 - MGP_CASTEiJ_P0035532 Bcl11b protein_coding protein_coding MGP_CASTEiJ_T0035533.1 MGP_CASTEiJ_G0019383.1 mouse_genomes_project 12 104252960 104350384 - MGP_CASTEiJ_P0035533 Bcl11b protein_coding protein_coding MGP_CASTEiJ_T0034441.1 MGP_CASTEiJ_G0019031.1 mouse_genomes_project 12 47887407 47913815 - MGP_CASTEiJ_P0034441 Egln3 protein_coding protein_coding MGP_CASTEiJ_T0006289.1 MGP_CASTEiJ_G0005254.1 mouse_genomes_project 12 102768203 102786483 + Gm17033 lincRNA lincRNA MGP_CASTEiJ_T0034683.1 MGP_CASTEiJ_G0019116.1 mouse_genomes_project 12 66503662 66521261 - MGP_CASTEiJ_P0034683 L3hypdh protein_coding protein_coding MGP_CASTEiJ_T0034684.1 MGP_CASTEiJ_G0019116.1 mouse_genomes_project 12 66503717 66521027 - MGP_CASTEiJ_P0034684 L3hypdh protein_coding unknown_likely_coding MGP_CASTEiJ_T0034685.1 MGP_CASTEiJ_G0019116.1 mouse_genomes_project 12 66506726 66521261 - L3hypdh protein_coding retained_intron MGP_CASTEiJ_T0034686.1 MGP_CASTEiJ_G0019116.1 mouse_genomes_project 12 66507500 66520841 - L3hypdh protein_coding processed_transcript MGP_CASTEiJ_T0016591.1 MGP_CASTEiJ_G0014555.1 mouse_genomes_project 12 108236645 108237406 + Gm15995 processed_transcript processed_transcript MGP_CASTEiJ_T0009550.1 MGP_CASTEiJ_G0007738.1 mouse_genomes_project 12 63692725 63692805 - miRNA miRNA MGP_CASTEiJ_T0035706.1 MGP_CASTEiJ_G0019436.1 mouse_genomes_project 12 109157904 109185888 + MGP_CASTEiJ_P0035706 Inf2 protein_coding protein_coding MGP_CASTEiJ_T0099303.1 MGP_CASTEiJ_G0036216.1 mouse_genomes_project 12 47955813 47955959 - Gm24692 snRNA snRNA MGP_CASTEiJ_T0099320.1 MGP_CASTEiJ_G0036233.1 mouse_genomes_project 12 73540064 73540166 - Gm25225 snRNA snRNA MGP_CASTEiJ_T0000135.1 MGP_CASTEiJ_G0000103.1 mouse_genomes_project 12 112070275 112070754 - MGP_CASTEiJ_P0000135 IG_V_gene IG_V_gene MGP_CASTEiJ_T0098827.1 MGP_CASTEiJ_G0035755.1 mouse_genomes_project 12 38455691 38466645 - Gm15902 sense_intronic sense_intronic MGP_CASTEiJ_T0006261.1 MGP_CASTEiJ_G0005229.1 mouse_genomes_project 12 72970472 72983425 + lincRNA lincRNA MGP_CASTEiJ_T0006262.1 MGP_CASTEiJ_G0005229.1 mouse_genomes_project 12 72971961 72974352 + lincRNA lincRNA MGP_CASTEiJ_T0006263.1 MGP_CASTEiJ_G0005229.1 mouse_genomes_project 12 72974272 72983524 + lincRNA lincRNA MGP_CASTEiJ_T0034678.1 MGP_CASTEiJ_G0019113.1 mouse_genomes_project 12 65704124 65715046 + MGP_CASTEiJ_P0034678 Dact1 protein_coding protein_coding MGP_CASTEiJ_T0034679.1 MGP_CASTEiJ_G0019113.1 mouse_genomes_project 12 65704224 65713803 + MGP_CASTEiJ_P0034679 Dact1 protein_coding protein_coding MGP_CASTEiJ_T0006305.1 MGP_CASTEiJ_G0005266.1 mouse_genomes_project 12 105987296 105992130 + Meg3 lincRNA lincRNA MGP_CASTEiJ_T0006306.1 MGP_CASTEiJ_G0005266.1 mouse_genomes_project 12 105987300 106024584 + Meg3 lincRNA lincRNA MGP_CASTEiJ_T0006307.1 MGP_CASTEiJ_G0005266.1 mouse_genomes_project 12 105987302 106010348 + Meg3 lincRNA lincRNA MGP_CASTEiJ_T0006308.1 MGP_CASTEiJ_G0005266.1 mouse_genomes_project 12 105988320 106012845 + Meg3 lincRNA lincRNA MGP_CASTEiJ_T0006309.1 MGP_CASTEiJ_G0005266.1 mouse_genomes_project 12 105988565 105991118 + Meg3 lincRNA lincRNA MGP_CASTEiJ_T0006311.1 MGP_CASTEiJ_G0005266.1 mouse_genomes_project 12 105991308 106009475 + Meg3 lincRNA lincRNA MGP_CASTEiJ_T0006312.1 MGP_CASTEiJ_G0005266.1 mouse_genomes_project 12 105994670 106024589 + Meg3 lincRNA lincRNA MGP_CASTEiJ_T0006313.1 MGP_CASTEiJ_G0005266.1 mouse_genomes_project 12 105995662 106024582 + Meg3 lincRNA lincRNA MGP_CASTEiJ_T0006314.1 MGP_CASTEiJ_G0005266.1 mouse_genomes_project 12 105995716 106024585 + Meg3 lincRNA lincRNA MGP_CASTEiJ_T0006315.1 MGP_CASTEiJ_G0005266.1 mouse_genomes_project 12 106000474 106009958 + Meg3 lincRNA lincRNA MGP_CASTEiJ_T0006316.1 MGP_CASTEiJ_G0005266.1 mouse_genomes_project 12 106000572 106001093 + Meg3 lincRNA lincRNA MGP_CASTEiJ_T0006251.1 MGP_CASTEiJ_G0005221.1 mouse_genomes_project 12 45531621 45533067 + Gm26517 lincRNA lincRNA MGP_CASTEiJ_T0098329.1 MGP_CASTEiJ_G0035260.1 mouse_genomes_project 12 28092418 28094034 + pseudogene pseudogene MGP_CASTEiJ_T0000021.1 MGP_CASTEiJ_G0000016.1 mouse_genomes_project 12 110134812 110134822 - MGP_CASTEiJ_P0000021 Ighd5-2 IG_D_gene IG_D_gene MGP_CASTEiJ_T0035049.1 MGP_CASTEiJ_G0019232.1 mouse_genomes_project 12 79703528 79731436 + MGP_CASTEiJ_P0035049 Vsx2 protein_coding protein_coding MGP_CASTEiJ_T0035050.1 MGP_CASTEiJ_G0019232.1 mouse_genomes_project 12 79703606 79731436 + MGP_CASTEiJ_P0035050 Vsx2 protein_coding protein_coding MGP_CASTEiJ_T0016563.1 MGP_CASTEiJ_G0014547.1 mouse_genomes_project 12 76496760 76528052 + 6530401F13Rik processed_transcript processed_transcript MGP_CASTEiJ_T0033999.1 MGP_CASTEiJ_G0018874.1 mouse_genomes_project 12 1649522 1673784 - MGP_CASTEiJ_P0033999 Fam228a protein_coding protein_coding MGP_CASTEiJ_T0009602.1 MGP_CASTEiJ_G0007790.1 mouse_genomes_project 12 106178035 106178147 - Gm25750 miRNA miRNA MGP_CASTEiJ_T0000230.1 MGP_CASTEiJ_G0000179.1 mouse_genomes_project 12 110674835 110675253 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0009542.1 MGP_CASTEiJ_G0007730.1 mouse_genomes_project 12 30216227 30216328 - Gm44326 miRNA miRNA MGP_CASTEiJ_T0000226.1 MGP_CASTEiJ_G0000175.1 mouse_genomes_project 12 110604104 110604484 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0100511.1 MGP_CASTEiJ_G0037424.1 mouse_genomes_project 12 59185275 59185361 + Gm25970 snoRNA snoRNA MGP_CASTEiJ_T0034674.1 MGP_CASTEiJ_G0019112.1 mouse_genomes_project 12 65531814 65635512 + MGP_CASTEiJ_P0034674 2700049A03Rik protein_coding protein_coding MGP_CASTEiJ_T0034675.1 MGP_CASTEiJ_G0019112.1 mouse_genomes_project 12 65531814 65635512 + MGP_CASTEiJ_P0034675 2700049A03Rik protein_coding protein_coding MGP_CASTEiJ_T0034676.1 MGP_CASTEiJ_G0019112.1 mouse_genomes_project 12 65546195 65552265 + MGP_CASTEiJ_P0034676 2700049A03Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034677.1 MGP_CASTEiJ_G0019112.1 mouse_genomes_project 12 65567673 65635508 + MGP_CASTEiJ_P0034677 2700049A03Rik protein_coding protein_coding MGP_CASTEiJ_T0006260.1 MGP_CASTEiJ_G0005228.1 mouse_genomes_project 12 71106748 71107646 - 4930426I24Rik lincRNA lincRNA MGP_CASTEiJ_T0034086.1 MGP_CASTEiJ_G0018908.1 mouse_genomes_project 12 10452914 10481522 - MGP_CASTEiJ_P0034086 Ddx1 protein_coding protein_coding MGP_CASTEiJ_T0034087.1 MGP_CASTEiJ_G0018908.1 mouse_genomes_project 12 10463718 10481495 - MGP_CASTEiJ_P0034087 Ddx1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0011011.1 MGP_CASTEiJ_G0009199.1 mouse_genomes_project 12 114955841 114956040 + Gm22537 misc_RNA misc_RNA MGP_CASTEiJ_T0098485.1 MGP_CASTEiJ_G0035416.1 mouse_genomes_project 12 77576021 77576124 - n-R5s63 rRNA rRNA MGP_CASTEiJ_T0035653.1 MGP_CASTEiJ_G0019419.1 mouse_genomes_project 12 108029486 108040492 + MGP_CASTEiJ_P0035653 Eif5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006243.1 MGP_CASTEiJ_G0005215.1 mouse_genomes_project 12 25798525 25803519 + Gdap10 lincRNA lincRNA MGP_CASTEiJ_T0034908.1 MGP_CASTEiJ_G0019196.1 mouse_genomes_project 12 76529173 76539895 - MGP_CASTEiJ_P0034908 Adam21 protein_coding protein_coding MGP_CASTEiJ_T0009608.1 MGP_CASTEiJ_G0007796.1 mouse_genomes_project 12 106181566 106181651 + Mir494 miRNA miRNA MGP_CASTEiJ_T0035347.1 MGP_CASTEiJ_G0019314.1 mouse_genomes_project 12 97374674 97452273 - MGP_CASTEiJ_P0035347 Tc2n protein_coding protein_coding MGP_CASTEiJ_T0035348.1 MGP_CASTEiJ_G0019314.1 mouse_genomes_project 12 97375794 97445921 - MGP_CASTEiJ_P0035348 Tc2n protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035349.1 MGP_CASTEiJ_G0019314.1 mouse_genomes_project 12 97380321 97443553 - MGP_CASTEiJ_P0035349 Tc2n protein_coding protein_coding MGP_CASTEiJ_T0035350.1 MGP_CASTEiJ_G0019314.1 mouse_genomes_project 12 97380368 97445587 - MGP_CASTEiJ_P0035350 Tc2n protein_coding protein_coding MGP_CASTEiJ_T0035248.1 MGP_CASTEiJ_G0019289.1 mouse_genomes_project 12 87203930 87360643 - MGP_CASTEiJ_P0035248 Ston2 protein_coding protein_coding MGP_CASTEiJ_T0035249.1 MGP_CASTEiJ_G0019289.1 mouse_genomes_project 12 87206732 87311861 - MGP_CASTEiJ_P0035249 Ston2 protein_coding protein_coding MGP_CASTEiJ_T0035250.1 MGP_CASTEiJ_G0019289.1 mouse_genomes_project 12 87268843 87279587 - Ston2 protein_coding processed_transcript MGP_CASTEiJ_T0035251.1 MGP_CASTEiJ_G0019289.1 mouse_genomes_project 12 87279694 87350743 - MGP_CASTEiJ_P0035251 Ston2 protein_coding protein_coding MGP_CASTEiJ_T0035252.1 MGP_CASTEiJ_G0019289.1 mouse_genomes_project 12 87303060 87341721 - Ston2 protein_coding processed_transcript MGP_CASTEiJ_T0035253.1 MGP_CASTEiJ_G0019289.1 mouse_genomes_project 12 87311623 87314112 - MGP_CASTEiJ_P0035253 Ston2 protein_coding protein_coding MGP_CASTEiJ_T0035254.1 MGP_CASTEiJ_G0019289.1 mouse_genomes_project 12 87360001 87362600 - Ston2 protein_coding processed_transcript MGP_CASTEiJ_T0011000.1 MGP_CASTEiJ_G0009188.1 mouse_genomes_project 12 66139864 66140167 + Gm22959 misc_RNA misc_RNA MGP_CASTEiJ_T0100494.1 MGP_CASTEiJ_G0037407.1 mouse_genomes_project 12 23942903 23943036 + Gm25408 snoRNA snoRNA MGP_CASTEiJ_T0035170.1 MGP_CASTEiJ_G0019269.1 mouse_genomes_project 12 82367008 82443250 + MGP_CASTEiJ_P0035170 Tmem63c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035171.1 MGP_CASTEiJ_G0019269.1 mouse_genomes_project 12 82371933 82443245 + MGP_CASTEiJ_P0035171 Tmem63c protein_coding protein_coding MGP_CASTEiJ_T0035172.1 MGP_CASTEiJ_G0019269.1 mouse_genomes_project 12 82372205 82443240 + MGP_CASTEiJ_P0035172 Tmem63c protein_coding protein_coding MGP_CASTEiJ_T0035173.1 MGP_CASTEiJ_G0019269.1 mouse_genomes_project 12 82372257 82408563 + MGP_CASTEiJ_P0035173 Tmem63c protein_coding protein_coding MGP_CASTEiJ_T0035174.1 MGP_CASTEiJ_G0019269.1 mouse_genomes_project 12 82386841 82443248 + MGP_CASTEiJ_P0035174 Tmem63c protein_coding protein_coding MGP_CASTEiJ_T0034288.1 MGP_CASTEiJ_G0018973.1 mouse_genomes_project 12 25344595 25348830 + MGP_CASTEiJ_P0034288 Ccdc71l protein_coding protein_coding MGP_CASTEiJ_T0034727.1 MGP_CASTEiJ_G0019129.1 mouse_genomes_project 12 67627395 67793425 + MGP_CASTEiJ_P0034727 Mnat1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034728.1 MGP_CASTEiJ_G0019129.1 mouse_genomes_project 12 67627395 67794558 + MGP_CASTEiJ_P0034728 Mnat1 protein_coding protein_coding MGP_CASTEiJ_T0034729.1 MGP_CASTEiJ_G0019129.1 mouse_genomes_project 12 67627395 67749611 + MGP_CASTEiJ_P0034729 Mnat1 protein_coding protein_coding MGP_CASTEiJ_T0016561.1 MGP_CASTEiJ_G0014545.1 mouse_genomes_project 12 68488042 68511353 - Gm15283 processed_transcript processed_transcript MGP_CASTEiJ_T0034761.1 MGP_CASTEiJ_G0019144.1 mouse_genomes_project 12 70367694 70389880 - MGP_CASTEiJ_P0034761 Sgpp1 protein_coding protein_coding MGP_CASTEiJ_T0035024.1 MGP_CASTEiJ_G0019226.1 mouse_genomes_project 12 79480151 79492022 + MGP_CASTEiJ_P0035024 Coq6 protein_coding protein_coding MGP_CASTEiJ_T0035025.1 MGP_CASTEiJ_G0019226.1 mouse_genomes_project 12 79480462 79492026 + MGP_CASTEiJ_P0035025 Coq6 protein_coding protein_coding MGP_CASTEiJ_T0035026.1 MGP_CASTEiJ_G0019226.1 mouse_genomes_project 12 79480490 79492026 + Coq6 protein_coding retained_intron MGP_CASTEiJ_T0035027.1 MGP_CASTEiJ_G0019226.1 mouse_genomes_project 12 79480524 79492022 + MGP_CASTEiJ_P0035027 Coq6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035028.1 MGP_CASTEiJ_G0019226.1 mouse_genomes_project 12 79480533 79492022 + MGP_CASTEiJ_P0035028 Coq6 protein_coding protein_coding MGP_CASTEiJ_T0035029.1 MGP_CASTEiJ_G0019226.1 mouse_genomes_project 12 79480535 79485374 + Coq6 protein_coding processed_transcript MGP_CASTEiJ_T0035030.1 MGP_CASTEiJ_G0019226.1 mouse_genomes_project 12 79480537 79492018 + Coq6 protein_coding retained_intron MGP_CASTEiJ_T0035031.1 MGP_CASTEiJ_G0019226.1 mouse_genomes_project 12 79480558 79489266 + MGP_CASTEiJ_P0035031 Coq6 protein_coding protein_coding MGP_CASTEiJ_T0035032.1 MGP_CASTEiJ_G0019226.1 mouse_genomes_project 12 79486663 79492022 + Coq6 protein_coding processed_transcript MGP_CASTEiJ_T0035033.1 MGP_CASTEiJ_G0019226.1 mouse_genomes_project 12 79486663 79490478 + Coq6 protein_coding processed_transcript MGP_CASTEiJ_T0035034.1 MGP_CASTEiJ_G0019226.1 mouse_genomes_project 12 79489236 79490400 + Coq6 protein_coding retained_intron MGP_CASTEiJ_T0006274.1 MGP_CASTEiJ_G0005240.1 mouse_genomes_project 12 82830334 82830467 - Gm29362 lincRNA lincRNA MGP_CASTEiJ_T0034682.1 MGP_CASTEiJ_G0019115.1 mouse_genomes_project 12 66499253 66500627 - MGP_CASTEiJ_P0034682 Gpr135 protein_coding protein_coding MGP_CASTEiJ_T0000237.1 MGP_CASTEiJ_G0000186.1 mouse_genomes_project 12 111150720 111151022 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0000089.1 MGP_CASTEiJ_G0000069.1 mouse_genomes_project 12 110965293 110965727 - MGP_CASTEiJ_P0000089 Ighv12-3 IG_V_gene IG_V_gene MGP_CASTEiJ_T0012470.1 MGP_CASTEiJ_G0010633.1 mouse_genomes_project 12 76354994 76355306 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034479.1 MGP_CASTEiJ_G0019046.1 mouse_genomes_project 12 49247693 49249347 + MGP_CASTEiJ_P0034479 Aldoart2 protein_coding protein_coding MGP_CASTEiJ_T0034068.1 MGP_CASTEiJ_G0018898.1 mouse_genomes_project 12 7576299 7600337 + MGP_CASTEiJ_P0034068 Nt5c1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034069.1 MGP_CASTEiJ_G0018898.1 mouse_genomes_project 12 7576305 7600340 + MGP_CASTEiJ_P0034069 Nt5c1b protein_coding protein_coding MGP_CASTEiJ_T0034070.1 MGP_CASTEiJ_G0018898.1 mouse_genomes_project 12 7576305 7581601 + MGP_CASTEiJ_P0034070 Nt5c1b protein_coding protein_coding MGP_CASTEiJ_T0034071.1 MGP_CASTEiJ_G0018898.1 mouse_genomes_project 12 7576370 7600337 + MGP_CASTEiJ_P0034071 Nt5c1b protein_coding protein_coding MGP_CASTEiJ_T0034072.1 MGP_CASTEiJ_G0018898.1 mouse_genomes_project 12 7581595 7600342 + MGP_CASTEiJ_P0034072 Nt5c1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0034017.1 MGP_CASTEiJ_G0018882.1 mouse_genomes_project 12 1858924 1992368 + MGP_CASTEiJ_P0034017 Atad2b protein_coding protein_coding MGP_CASTEiJ_T0034018.1 MGP_CASTEiJ_G0018882.1 mouse_genomes_project 12 1859229 1992368 + MGP_CASTEiJ_P0034018 Atad2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0003301.1 MGP_CASTEiJ_G0003041.1 mouse_genomes_project 12 80087152 80088243 + Gm17139 antisense antisense MGP_CASTEiJ_T0099299.1 MGP_CASTEiJ_G0036212.1 mouse_genomes_project 12 45371648 45371746 - Gm22663 snRNA snRNA MGP_CASTEiJ_T0012441.1 MGP_CASTEiJ_G0010604.1 mouse_genomes_project 12 23904845 23906419 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034799.1 MGP_CASTEiJ_G0019156.1 mouse_genomes_project 12 71307252 71440757 - MGP_CASTEiJ_P0034799 Sptb protein_coding protein_coding MGP_CASTEiJ_T0034800.1 MGP_CASTEiJ_G0019156.1 mouse_genomes_project 12 71309996 71310851 - Sptb protein_coding retained_intron MGP_CASTEiJ_T0034801.1 MGP_CASTEiJ_G0019156.1 mouse_genomes_project 12 71322762 71372824 - MGP_CASTEiJ_P0034801 Sptb protein_coding unknown_likely_coding MGP_CASTEiJ_T0034802.1 MGP_CASTEiJ_G0019156.1 mouse_genomes_project 12 71322768 71440233 - MGP_CASTEiJ_P0034802 Sptb protein_coding protein_coding MGP_CASTEiJ_T0034433.1 MGP_CASTEiJ_G0019027.1 mouse_genomes_project 12 45754699 45951878 + MGP_CASTEiJ_P0034433 Nubpl protein_coding protein_coding MGP_CASTEiJ_T0034434.1 MGP_CASTEiJ_G0019027.1 mouse_genomes_project 12 45754718 45796324 + Nubpl protein_coding retained_intron MGP_CASTEiJ_T0034435.1 MGP_CASTEiJ_G0019027.1 mouse_genomes_project 12 45754723 45758049 + Nubpl protein_coding retained_intron MGP_CASTEiJ_T0034436.1 MGP_CASTEiJ_G0019027.1 mouse_genomes_project 12 45784330 45941768 + MGP_CASTEiJ_P0034436 Nubpl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009561.1 MGP_CASTEiJ_G0007749.1 mouse_genomes_project 12 80938878 80938939 - miRNA miRNA MGP_CASTEiJ_T0034840.1 MGP_CASTEiJ_G0019171.1 mouse_genomes_project 12 73891471 73901893 - MGP_CASTEiJ_P0034840 Pigh protein_coding protein_coding MGP_CASTEiJ_T0035105.1 MGP_CASTEiJ_G0019251.1 mouse_genomes_project 12 80490681 80532383 - MGP_CASTEiJ_P0035105 Nek9 protein_coding protein_coding MGP_CASTEiJ_T0000253.1 MGP_CASTEiJ_G0000202.1 mouse_genomes_project 12 111640825 111641119 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0034451.1 MGP_CASTEiJ_G0019036.1 mouse_genomes_project 12 48622426 48734355 - MGP_CASTEiJ_P0034451 Baz1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0034452.1 MGP_CASTEiJ_G0019036.1 mouse_genomes_project 12 48622824 48734441 - MGP_CASTEiJ_P0034452 Baz1a protein_coding protein_coding MGP_CASTEiJ_T0034453.1 MGP_CASTEiJ_G0019036.1 mouse_genomes_project 12 48623386 48734612 - MGP_CASTEiJ_P0034453 Baz1a protein_coding protein_coding MGP_CASTEiJ_T0034454.1 MGP_CASTEiJ_G0019036.1 mouse_genomes_project 12 48624004 48624985 - Baz1a protein_coding retained_intron MGP_CASTEiJ_T0034455.1 MGP_CASTEiJ_G0019036.1 mouse_genomes_project 12 48655798 48663079 - MGP_CASTEiJ_P0034455 Baz1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034456.1 MGP_CASTEiJ_G0019036.1 mouse_genomes_project 12 48675454 48679159 - MGP_CASTEiJ_P0034456 Baz1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034457.1 MGP_CASTEiJ_G0019036.1 mouse_genomes_project 12 48697196 48763926 - MGP_CASTEiJ_P0034457 Baz1a protein_coding protein_coding MGP_CASTEiJ_T0034458.1 MGP_CASTEiJ_G0019036.1 mouse_genomes_project 12 48720535 48732566 - MGP_CASTEiJ_P0034458 Baz1a protein_coding protein_coding MGP_CASTEiJ_T0034459.1 MGP_CASTEiJ_G0019036.1 mouse_genomes_project 12 48720550 48746964 - MGP_CASTEiJ_P0034459 Baz1a protein_coding protein_coding MGP_CASTEiJ_T0034499.1 MGP_CASTEiJ_G0019055.1 mouse_genomes_project 12 51030500 51043025 + MGP_CASTEiJ_P0034499 Prps1l3 protein_coding protein_coding MGP_CASTEiJ_T0011001.1 MGP_CASTEiJ_G0009189.1 mouse_genomes_project 12 71419905 71420187 + Gm24010 misc_RNA misc_RNA MGP_CASTEiJ_T0035369.1 MGP_CASTEiJ_G0019320.1 mouse_genomes_project 12 98047214 98164365 + MGP_CASTEiJ_P0035369 Rin3 protein_coding protein_coding MGP_CASTEiJ_T0035370.1 MGP_CASTEiJ_G0019320.1 mouse_genomes_project 12 98047333 98137396 + MGP_CASTEiJ_P0035370 Rin3 protein_coding protein_coding MGP_CASTEiJ_T0035371.1 MGP_CASTEiJ_G0019320.1 mouse_genomes_project 12 98047334 98092836 + MGP_CASTEiJ_P0035371 Rin3 protein_coding protein_coding MGP_CASTEiJ_T0035372.1 MGP_CASTEiJ_G0019320.1 mouse_genomes_project 12 98047791 98164366 + MGP_CASTEiJ_P0035372 Rin3 protein_coding protein_coding MGP_CASTEiJ_T0035373.1 MGP_CASTEiJ_G0019320.1 mouse_genomes_project 12 98129000 98135808 + Rin3 protein_coding processed_transcript MGP_CASTEiJ_T0035374.1 MGP_CASTEiJ_G0019320.1 mouse_genomes_project 12 98129000 98142544 + Rin3 protein_coding processed_transcript MGP_CASTEiJ_T0035375.1 MGP_CASTEiJ_G0019320.1 mouse_genomes_project 12 98129035 98133530 + Rin3 protein_coding retained_intron MGP_CASTEiJ_T0000825.1 MGP_CASTEiJ_G0000765.1 mouse_genomes_project 12 78145674 78146614 + TEC TEC MGP_CASTEiJ_T0034297.1 MGP_CASTEiJ_G0018977.1 mouse_genomes_project 12 26157398 26269462 + MGP_CASTEiJ_P0034297 Atxn7l1 protein_coding protein_coding MGP_CASTEiJ_T0034298.1 MGP_CASTEiJ_G0018977.1 mouse_genomes_project 12 26157416 26269462 + MGP_CASTEiJ_P0034298 Atxn7l1 protein_coding protein_coding MGP_CASTEiJ_T0034299.1 MGP_CASTEiJ_G0018977.1 mouse_genomes_project 12 26157459 26397499 + MGP_CASTEiJ_P0034299 Atxn7l1 protein_coding protein_coding MGP_CASTEiJ_T0034300.1 MGP_CASTEiJ_G0018977.1 mouse_genomes_project 12 26157468 26401075 + MGP_CASTEiJ_P0034300 Atxn7l1 protein_coding protein_coding MGP_CASTEiJ_T0034301.1 MGP_CASTEiJ_G0018977.1 mouse_genomes_project 12 26157479 26348067 + MGP_CASTEiJ_P0034301 Atxn7l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034302.1 MGP_CASTEiJ_G0018977.1 mouse_genomes_project 12 26157510 26350797 + Atxn7l1 protein_coding retained_intron MGP_CASTEiJ_T0034303.1 MGP_CASTEiJ_G0018977.1 mouse_genomes_project 12 26322440 26390339 + MGP_CASTEiJ_P0034303 Atxn7l1 protein_coding protein_coding MGP_CASTEiJ_T0034304.1 MGP_CASTEiJ_G0018977.1 mouse_genomes_project 12 26336283 26367004 + MGP_CASTEiJ_P0034304 Atxn7l1 protein_coding protein_coding MGP_CASTEiJ_T0034305.1 MGP_CASTEiJ_G0018977.1 mouse_genomes_project 12 26336295 26350797 + Atxn7l1 protein_coding retained_intron MGP_CASTEiJ_T0034306.1 MGP_CASTEiJ_G0018977.1 mouse_genomes_project 12 26336406 26347997 + MGP_CASTEiJ_P0034306 Atxn7l1 protein_coding protein_coding MGP_CASTEiJ_T0034307.1 MGP_CASTEiJ_G0018977.1 mouse_genomes_project 12 26337406 26394423 + MGP_CASTEiJ_P0034307 Atxn7l1 protein_coding protein_coding MGP_CASTEiJ_T0034308.1 MGP_CASTEiJ_G0018977.1 mouse_genomes_project 12 26337414 26348138 + Atxn7l1 protein_coding retained_intron MGP_CASTEiJ_T0034309.1 MGP_CASTEiJ_G0018977.1 mouse_genomes_project 12 26367391 26390344 + Atxn7l1 protein_coding retained_intron MGP_CASTEiJ_T0034310.1 MGP_CASTEiJ_G0018977.1 mouse_genomes_project 12 26389389 26397488 + MGP_CASTEiJ_P0034310 Atxn7l1 protein_coding protein_coding MGP_CASTEiJ_T0000125.1 MGP_CASTEiJ_G0000095.1 mouse_genomes_project 12 112030940 112031395 - MGP_CASTEiJ_P0000125 Ighv1-78 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000126.1 MGP_CASTEiJ_G0000095.1 mouse_genomes_project 12 112030940 112031234 - MGP_CASTEiJ_P0000126 Ighv1-78 IG_V_gene IG_V_gene MGP_CASTEiJ_T0010990.1 MGP_CASTEiJ_G0009178.1 mouse_genomes_project 12 8842493 8842801 - Gm23781 misc_RNA misc_RNA MGP_CASTEiJ_T0034402.1 MGP_CASTEiJ_G0019012.1 mouse_genomes_project 12 38338033 38571563 - MGP_CASTEiJ_P0034402 Stxbp6 protein_coding protein_coding MGP_CASTEiJ_T0034403.1 MGP_CASTEiJ_G0019012.1 mouse_genomes_project 12 38340765 38571944 - MGP_CASTEiJ_P0034403 Stxbp6 protein_coding protein_coding MGP_CASTEiJ_T0034404.1 MGP_CASTEiJ_G0019012.1 mouse_genomes_project 12 38349668 38507803 - Stxbp6 protein_coding processed_transcript MGP_CASTEiJ_T0034405.1 MGP_CASTEiJ_G0019012.1 mouse_genomes_project 12 38394145 38571605 - MGP_CASTEiJ_P0034405 Stxbp6 protein_coding protein_coding MGP_CASTEiJ_T0034406.1 MGP_CASTEiJ_G0019012.1 mouse_genomes_project 12 38507770 38571769 - MGP_CASTEiJ_P0034406 Stxbp6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000255.1 MGP_CASTEiJ_G0000204.1 mouse_genomes_project 12 111760400 111760694 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0000243.1 MGP_CASTEiJ_G0000192.1 mouse_genomes_project 12 111309815 111310300 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0034290.1 MGP_CASTEiJ_G0018975.1 mouse_genomes_project 12 25945009 25972388 + MGP_CASTEiJ_P0034290 Sypl protein_coding protein_coding MGP_CASTEiJ_T0034291.1 MGP_CASTEiJ_G0018975.1 mouse_genomes_project 12 25945302 25970244 + MGP_CASTEiJ_P0034291 Sypl protein_coding protein_coding MGP_CASTEiJ_T0034292.1 MGP_CASTEiJ_G0018975.1 mouse_genomes_project 12 25945365 25967475 + MGP_CASTEiJ_P0034292 Sypl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034293.1 MGP_CASTEiJ_G0018975.1 mouse_genomes_project 12 25945677 25959996 + Sypl protein_coding processed_transcript MGP_CASTEiJ_T0034294.1 MGP_CASTEiJ_G0018975.1 mouse_genomes_project 12 25957635 25963837 + Sypl protein_coding retained_intron MGP_CASTEiJ_T0034295.1 MGP_CASTEiJ_G0018975.1 mouse_genomes_project 12 25957715 25962936 + Sypl protein_coding processed_transcript MGP_CASTEiJ_T0034249.1 MGP_CASTEiJ_G0018962.1 mouse_genomes_project 12 24220010 24240652 - MGP_CASTEiJ_P0034249 Dld protein_coding protein_coding MGP_CASTEiJ_T0035641.1 MGP_CASTEiJ_G0019417.1 mouse_genomes_project 12 107925413 107937977 + MGP_CASTEiJ_P0035641 Tnfaip2 protein_coding protein_coding MGP_CASTEiJ_T0035642.1 MGP_CASTEiJ_G0019417.1 mouse_genomes_project 12 107925602 107937637 + MGP_CASTEiJ_P0035642 Tnfaip2 protein_coding protein_coding MGP_CASTEiJ_T0035643.1 MGP_CASTEiJ_G0019417.1 mouse_genomes_project 12 107925606 107937637 + Tnfaip2 protein_coding retained_intron MGP_CASTEiJ_T0035644.1 MGP_CASTEiJ_G0019417.1 mouse_genomes_project 12 107925606 107931557 + MGP_CASTEiJ_P0035644 Tnfaip2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035645.1 MGP_CASTEiJ_G0019417.1 mouse_genomes_project 12 107927268 107928482 + MGP_CASTEiJ_P0035645 Tnfaip2 protein_coding protein_coding MGP_CASTEiJ_T0035646.1 MGP_CASTEiJ_G0019417.1 mouse_genomes_project 12 107927943 107936784 + MGP_CASTEiJ_P0035646 Tnfaip2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035647.1 MGP_CASTEiJ_G0019417.1 mouse_genomes_project 12 107929054 107936784 + MGP_CASTEiJ_P0035647 Tnfaip2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035648.1 MGP_CASTEiJ_G0019417.1 mouse_genomes_project 12 107931104 107932281 + Tnfaip2 protein_coding retained_intron MGP_CASTEiJ_T0035649.1 MGP_CASTEiJ_G0019417.1 mouse_genomes_project 12 107932490 107934444 + Tnfaip2 protein_coding retained_intron MGP_CASTEiJ_T0035650.1 MGP_CASTEiJ_G0019417.1 mouse_genomes_project 12 107932845 107936718 + MGP_CASTEiJ_P0035650 Tnfaip2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035651.1 MGP_CASTEiJ_G0019417.1 mouse_genomes_project 12 107933493 107936585 + Tnfaip2 protein_coding retained_intron MGP_CASTEiJ_T0035489.1 MGP_CASTEiJ_G0019369.1 mouse_genomes_project 12 101220473 101240114 + MGP_CASTEiJ_P0035489 protein_coding protein_coding MGP_CASTEiJ_T0034342.1 MGP_CASTEiJ_G0018996.1 mouse_genomes_project 12 30326869 30396147 + MGP_CASTEiJ_P0034342 Meox2 protein_coding protein_coding MGP_CASTEiJ_T0000256.1 MGP_CASTEiJ_G0000205.1 mouse_genomes_project 12 111906935 111907369 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0035214.1 MGP_CASTEiJ_G0019284.1 mouse_genomes_project 12 83831683 83942767 + MGP_CASTEiJ_P0035214 Adck1 protein_coding protein_coding MGP_CASTEiJ_T0035215.1 MGP_CASTEiJ_G0019284.1 mouse_genomes_project 12 83831930 83942766 + MGP_CASTEiJ_P0035215 Adck1 protein_coding protein_coding MGP_CASTEiJ_T0035179.1 MGP_CASTEiJ_G0019272.1 mouse_genomes_project 12 82506542 82523116 + MGP_CASTEiJ_P0035179 Gstz1 protein_coding protein_coding MGP_CASTEiJ_T0035180.1 MGP_CASTEiJ_G0019272.1 mouse_genomes_project 12 82516054 82522224 + MGP_CASTEiJ_P0035180 Gstz1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003313.1 MGP_CASTEiJ_G0003051.1 mouse_genomes_project 12 107108802 107109318 - Gm17111 antisense antisense MGP_CASTEiJ_T0100513.1 MGP_CASTEiJ_G0037426.1 mouse_genomes_project 12 59727335 59727467 - Gm23948 snoRNA snoRNA MGP_CASTEiJ_T0009635.1 MGP_CASTEiJ_G0007823.1 mouse_genomes_project 12 106208601 106208691 + Mir541 miRNA miRNA MGP_CASTEiJ_T0009559.1 MGP_CASTEiJ_G0007747.1 mouse_genomes_project 12 76109174 76109258 + Mir3067 miRNA miRNA MGP_CASTEiJ_T0100531.1 MGP_CASTEiJ_G0037444.1 mouse_genomes_project 12 106098056 106098127 + Gm23600 snoRNA snoRNA MGP_CASTEiJ_T0035428.1 MGP_CASTEiJ_G0019340.1 mouse_genomes_project 12 99271729 99277776 + MGP_CASTEiJ_P0035428 Ifi27 protein_coding protein_coding MGP_CASTEiJ_T0035429.1 MGP_CASTEiJ_G0019340.1 mouse_genomes_project 12 99271729 99277776 + MGP_CASTEiJ_P0035429 Ifi27 protein_coding protein_coding MGP_CASTEiJ_T0035430.1 MGP_CASTEiJ_G0019340.1 mouse_genomes_project 12 99271729 99277776 + MGP_CASTEiJ_P0035430 Ifi27 protein_coding protein_coding MGP_CASTEiJ_T0035431.1 MGP_CASTEiJ_G0019340.1 mouse_genomes_project 12 99271730 99277808 + MGP_CASTEiJ_P0035431 Ifi27 protein_coding protein_coding MGP_CASTEiJ_T0035432.1 MGP_CASTEiJ_G0019340.1 mouse_genomes_project 12 99271763 99275203 + Ifi27 protein_coding retained_intron MGP_CASTEiJ_T0035433.1 MGP_CASTEiJ_G0019340.1 mouse_genomes_project 12 99271777 99277808 + MGP_CASTEiJ_P0035433 Ifi27 protein_coding protein_coding MGP_CASTEiJ_T0035434.1 MGP_CASTEiJ_G0019340.1 mouse_genomes_project 12 99271803 99274504 + Ifi27 protein_coding retained_intron MGP_CASTEiJ_T0035435.1 MGP_CASTEiJ_G0019340.1 mouse_genomes_project 12 99271810 99275059 + MGP_CASTEiJ_P0035435 Ifi27 protein_coding protein_coding MGP_CASTEiJ_T0035436.1 MGP_CASTEiJ_G0019340.1 mouse_genomes_project 12 99275193 99277808 + Ifi27 protein_coding retained_intron MGP_CASTEiJ_T0000260.1 MGP_CASTEiJ_G0000209.1 mouse_genomes_project 12 112104933 112105366 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0102027.1 MGP_CASTEiJ_G0038752.1 mouse_genomes_project 12 100093782 100098190 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099327.1 MGP_CASTEiJ_G0036240.1 mouse_genomes_project 12 94429451 94429514 + Gm25486 snRNA snRNA MGP_CASTEiJ_T0034423.1 MGP_CASTEiJ_G0019021.1 mouse_genomes_project 12 45225847 45318610 - MGP_CASTEiJ_P0034423 Strn3 protein_coding protein_coding MGP_CASTEiJ_T0034424.1 MGP_CASTEiJ_G0019021.1 mouse_genomes_project 12 45225847 45318610 - MGP_CASTEiJ_P0034424 Strn3 protein_coding protein_coding MGP_CASTEiJ_T0034088.1 MGP_CASTEiJ_G0018909.1 mouse_genomes_project 12 10505035 10843985 + MGP_CASTEiJ_P0034088 Nbas protein_coding unknown_likely_coding MGP_CASTEiJ_T0034089.1 MGP_CASTEiJ_G0018909.1 mouse_genomes_project 12 10505050 10828384 + MGP_CASTEiJ_P0034089 Nbas protein_coding protein_coding MGP_CASTEiJ_T0009609.1 MGP_CASTEiJ_G0007797.1 mouse_genomes_project 12 106181825 106181899 + Mir679 miRNA miRNA MGP_CASTEiJ_T0034343.1 MGP_CASTEiJ_G0018997.1 mouse_genomes_project 12 30444741 30813483 + MGP_CASTEiJ_P0034343 Agmo protein_coding protein_coding MGP_CASTEiJ_T0034344.1 MGP_CASTEiJ_G0018997.1 mouse_genomes_project 12 30444850 30449106 + MGP_CASTEiJ_P0034344 Agmo protein_coding protein_coding MGP_CASTEiJ_T0034345.1 MGP_CASTEiJ_G0018997.1 mouse_genomes_project 12 30444879 30619213 + Agmo protein_coding retained_intron MGP_CASTEiJ_T0034346.1 MGP_CASTEiJ_G0018997.1 mouse_genomes_project 12 30444960 30637939 + MGP_CASTEiJ_P0034346 Agmo protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034347.1 MGP_CASTEiJ_G0018997.1 mouse_genomes_project 12 30445142 30792931 + MGP_CASTEiJ_P0034347 Agmo protein_coding protein_coding MGP_CASTEiJ_T0000114.1 MGP_CASTEiJ_G0000087.1 mouse_genomes_project 12 111585009 111585482 - MGP_CASTEiJ_P0000114 Ighv1-47 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000115.1 MGP_CASTEiJ_G0000087.1 mouse_genomes_project 12 111585009 111585303 - MGP_CASTEiJ_P0000115 Ighv1-47 IG_V_gene IG_V_gene MGP_CASTEiJ_T0012483.1 MGP_CASTEiJ_G0010646.1 mouse_genomes_project 12 95117224 95117475 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034201.1 MGP_CASTEiJ_G0018945.1 mouse_genomes_project 12 21402110 21431187 - MGP_CASTEiJ_P0034201 Colec11 protein_coding protein_coding MGP_CASTEiJ_T0035255.1 MGP_CASTEiJ_G0019290.1 mouse_genomes_project 12 87378972 87424338 - MGP_CASTEiJ_P0035255 Sel1l protein_coding protein_coding MGP_CASTEiJ_T0035256.1 MGP_CASTEiJ_G0019290.1 mouse_genomes_project 12 87378972 87424338 - MGP_CASTEiJ_P0035256 Sel1l protein_coding protein_coding MGP_CASTEiJ_T0035257.1 MGP_CASTEiJ_G0019290.1 mouse_genomes_project 12 87378994 87386789 - Sel1l protein_coding processed_transcript MGP_CASTEiJ_T0035258.1 MGP_CASTEiJ_G0019290.1 mouse_genomes_project 12 87379545 87424310 - MGP_CASTEiJ_P0035258 Sel1l protein_coding protein_coding MGP_CASTEiJ_T0035259.1 MGP_CASTEiJ_G0019290.1 mouse_genomes_project 12 87381575 87424311 - Sel1l protein_coding retained_intron MGP_CASTEiJ_T0035260.1 MGP_CASTEiJ_G0019290.1 mouse_genomes_project 12 87388345 87391097 - Sel1l protein_coding retained_intron MGP_CASTEiJ_T0035261.1 MGP_CASTEiJ_G0019290.1 mouse_genomes_project 12 87392829 87424311 - Sel1l protein_coding retained_intron MGP_CASTEiJ_T0035262.1 MGP_CASTEiJ_G0019290.1 mouse_genomes_project 12 87397781 87406572 - Sel1l protein_coding retained_intron MGP_CASTEiJ_T0035263.1 MGP_CASTEiJ_G0019290.1 mouse_genomes_project 12 87406815 87424320 - Sel1l protein_coding retained_intron MGP_CASTEiJ_T0035264.1 MGP_CASTEiJ_G0019290.1 mouse_genomes_project 12 87416200 87424321 - Sel1l protein_coding retained_intron MGP_CASTEiJ_T0035613.1 MGP_CASTEiJ_G0019405.1 mouse_genomes_project 12 107272376 107305207 - Mok protein_coding retained_intron MGP_CASTEiJ_T0035614.1 MGP_CASTEiJ_G0019405.1 mouse_genomes_project 12 107272376 107305198 - MGP_CASTEiJ_P0035614 Mok protein_coding protein_coding MGP_CASTEiJ_T0035615.1 MGP_CASTEiJ_G0019405.1 mouse_genomes_project 12 107272376 107305207 - MGP_CASTEiJ_P0035615 Mok protein_coding protein_coding MGP_CASTEiJ_T0035616.1 MGP_CASTEiJ_G0019405.1 mouse_genomes_project 12 107279252 107305195 - MGP_CASTEiJ_P0035616 Mok protein_coding protein_coding MGP_CASTEiJ_T0035481.1 MGP_CASTEiJ_G0019363.1 mouse_genomes_project 12 100702708 100770347 - MGP_CASTEiJ_P0035481 Dicer1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100537.1 MGP_CASTEiJ_G0037450.1 mouse_genomes_project 12 106119667 106119739 + DQ267102 snoRNA snoRNA MGP_CASTEiJ_T0009566.1 MGP_CASTEiJ_G0007754.1 mouse_genomes_project 12 84961655 84961721 + Gm23989 miRNA miRNA MGP_CASTEiJ_T0006247.1 MGP_CASTEiJ_G0005218.1 mouse_genomes_project 12 30315511 30325115 - Gm29007 lincRNA lincRNA MGP_CASTEiJ_T0035457.1 MGP_CASTEiJ_G0019348.1 mouse_genomes_project 12 99850057 99870082 - MGP_CASTEiJ_P0035457 Serpina9 protein_coding protein_coding MGP_CASTEiJ_T0035458.1 MGP_CASTEiJ_G0019348.1 mouse_genomes_project 12 99864768 99870185 - MGP_CASTEiJ_P0035458 Serpina9 protein_coding protein_coding MGP_CASTEiJ_T0035813.1 MGP_CASTEiJ_G0019474.1 mouse_genomes_project 12 115664441 115690074 + MGP_CASTEiJ_P0035813 Macc1 protein_coding protein_coding MGP_CASTEiJ_T0034220.1 MGP_CASTEiJ_G0018953.1 mouse_genomes_project 12 22912894 22990653 - MGP_CASTEiJ_P0034220 Tpo protein_coding protein_coding MGP_CASTEiJ_T0034221.1 MGP_CASTEiJ_G0018953.1 mouse_genomes_project 12 22948028 22950861 - Tpo protein_coding retained_intron MGP_CASTEiJ_T0034222.1 MGP_CASTEiJ_G0018953.1 mouse_genomes_project 12 22972818 22989925 - MGP_CASTEiJ_P0034222 Tpo protein_coding protein_coding MGP_CASTEiJ_T0034077.1 MGP_CASTEiJ_G0018902.1 mouse_genomes_project 12 8416873 8443030 - MGP_CASTEiJ_P0034077 Gen1 protein_coding protein_coding MGP_CASTEiJ_T0012450.1 MGP_CASTEiJ_G0010613.1 mouse_genomes_project 12 49058957 49059473 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012433.1 MGP_CASTEiJ_G0010596.1 mouse_genomes_project 12 795035 795554 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034508.1 MGP_CASTEiJ_G0019058.1 mouse_genomes_project 12 51418956 51472868 + MGP_CASTEiJ_P0034508 protein_coding protein_coding MGP_CASTEiJ_T0034509.1 MGP_CASTEiJ_G0019058.1 mouse_genomes_project 12 51429200 51591543 + MGP_CASTEiJ_P0034509 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034510.1 MGP_CASTEiJ_G0019058.1 mouse_genomes_project 12 51430582 51591751 + MGP_CASTEiJ_P0034510 protein_coding protein_coding MGP_CASTEiJ_T0034511.1 MGP_CASTEiJ_G0019058.1 mouse_genomes_project 12 51503293 51505597 + MGP_CASTEiJ_P0034511 protein_coding protein_coding MGP_CASTEiJ_T0035464.1 MGP_CASTEiJ_G0019352.1 mouse_genomes_project 12 100018316 100029872 + MGP_CASTEiJ_P0035464 Serpina3b protein_coding protein_coding MGP_CASTEiJ_T0035045.1 MGP_CASTEiJ_G0019229.1 mouse_genomes_project 12 79538944 79540327 + MGP_CASTEiJ_P0035045 Rnf113a2 protein_coding protein_coding MGP_CASTEiJ_T0034559.1 MGP_CASTEiJ_G0019070.1 mouse_genomes_project 12 58587564 58591166 - MGP_CASTEiJ_P0034559 Fscb protein_coding protein_coding MGP_CASTEiJ_T0034605.1 MGP_CASTEiJ_G0019089.1 mouse_genomes_project 12 63634166 63688733 - MGP_CASTEiJ_P0034605 Nemf protein_coding protein_coding MGP_CASTEiJ_T0034606.1 MGP_CASTEiJ_G0019089.1 mouse_genomes_project 12 63642813 63688707 - MGP_CASTEiJ_P0034606 Nemf protein_coding unknown_likely_coding MGP_CASTEiJ_T0000010.1 MGP_CASTEiJ_G0000008.1 mouse_genomes_project 12 109996733 110002048 - MGP_CASTEiJ_P0000010 Ighg1 IG_C_gene IG_C_gene MGP_CASTEiJ_T0000011.1 MGP_CASTEiJ_G0000008.1 mouse_genomes_project 12 110000408 110002048 - MGP_CASTEiJ_P0000011 Ighg1 IG_C_gene IG_C_gene MGP_CASTEiJ_T0000090.1 MGP_CASTEiJ_G0000070.1 mouse_genomes_project 12 111092031 111092489 - MGP_CASTEiJ_P0000090 Ighv6-3 IG_V_gene IG_V_gene MGP_CASTEiJ_T0009583.1 MGP_CASTEiJ_G0007771.1 mouse_genomes_project 12 106039382 106039476 + Mir665 miRNA miRNA MGP_CASTEiJ_T0100486.1 MGP_CASTEiJ_G0037399.1 mouse_genomes_project 12 6807993 6808121 - Gm23979 snoRNA snoRNA MGP_CASTEiJ_T0006253.1 MGP_CASTEiJ_G0005223.1 mouse_genomes_project 12 52801310 52817406 + Gm17529 lincRNA lincRNA MGP_CASTEiJ_T0009625.1 MGP_CASTEiJ_G0007813.1 mouse_genomes_project 12 106195031 106195154 + Gm27379 miRNA miRNA MGP_CASTEiJ_T0012498.1 MGP_CASTEiJ_G0010661.1 mouse_genomes_project 12 110069082 110069536 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0033977.1 MGP_CASTEiJ_G0018866.1 mouse_genomes_project 12 966963 998633 + MGP_CASTEiJ_P0033977 Dnajc27 protein_coding protein_coding MGP_CASTEiJ_T0033978.1 MGP_CASTEiJ_G0018866.1 mouse_genomes_project 12 967018 994827 + MGP_CASTEiJ_P0033978 Dnajc27 protein_coding protein_coding MGP_CASTEiJ_T0034860.1 MGP_CASTEiJ_G0019180.1 mouse_genomes_project 12 75232372 75324220 - MGP_CASTEiJ_P0034860 Dcaf5 protein_coding protein_coding MGP_CASTEiJ_T0009546.1 MGP_CASTEiJ_G0007734.1 mouse_genomes_project 12 49530016 49530107 - Gm23394 miRNA miRNA MGP_CASTEiJ_T0034443.1 MGP_CASTEiJ_G0019033.1 mouse_genomes_project 12 48399825 48428475 - MGP_CASTEiJ_P0034443 Eapp protein_coding protein_coding MGP_CASTEiJ_T0034444.1 MGP_CASTEiJ_G0019033.1 mouse_genomes_project 12 48401141 48428478 - MGP_CASTEiJ_P0034444 Eapp protein_coding protein_coding MGP_CASTEiJ_T0034445.1 MGP_CASTEiJ_G0019033.1 mouse_genomes_project 12 48402761 48428415 - MGP_CASTEiJ_P0034445 Eapp protein_coding protein_coding MGP_CASTEiJ_T0034446.1 MGP_CASTEiJ_G0019033.1 mouse_genomes_project 12 48402766 48428491 - MGP_CASTEiJ_P0034446 Eapp protein_coding protein_coding MGP_CASTEiJ_T0034447.1 MGP_CASTEiJ_G0019033.1 mouse_genomes_project 12 48414167 48428437 - MGP_CASTEiJ_P0034447 Eapp protein_coding protein_coding MGP_CASTEiJ_T0034448.1 MGP_CASTEiJ_G0019033.1 mouse_genomes_project 12 48419801 48428456 - MGP_CASTEiJ_P0034448 Eapp protein_coding protein_coding MGP_CASTEiJ_T0034322.1 MGP_CASTEiJ_G0018986.1 mouse_genomes_project 12 28659190 28696008 - MGP_CASTEiJ_P0034322 Ahr protein_coding protein_coding MGP_CASTEiJ_T0034323.1 MGP_CASTEiJ_G0018986.1 mouse_genomes_project 12 28664730 28695672 - MGP_CASTEiJ_P0034323 Ahr protein_coding unknown_likely_coding MGP_CASTEiJ_T0034324.1 MGP_CASTEiJ_G0018986.1 mouse_genomes_project 12 28666079 28695591 - MGP_CASTEiJ_P0034324 Ahr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034325.1 MGP_CASTEiJ_G0018986.1 mouse_genomes_project 12 28676698 28687679 - Ahr protein_coding retained_intron MGP_CASTEiJ_T0034480.1 MGP_CASTEiJ_G0019047.1 mouse_genomes_project 12 49284597 49287688 + MGP_CASTEiJ_P0034480 Insm2 protein_coding protein_coding MGP_CASTEiJ_T0034150.1 MGP_CASTEiJ_G0018927.1 mouse_genomes_project 12 16161877 16169063 + MGP_CASTEiJ_P0034150 Iah1 protein_coding protein_coding MGP_CASTEiJ_T0009539.1 MGP_CASTEiJ_G0007727.1 mouse_genomes_project 12 28326536 28326623 - Mir680-3 miRNA miRNA MGP_CASTEiJ_T0009594.1 MGP_CASTEiJ_G0007782.1 mouse_genomes_project 12 106064616 106064736 + Mir1188 miRNA miRNA MGP_CASTEiJ_T0000133.1 MGP_CASTEiJ_G0000101.1 mouse_genomes_project 12 112070275 112070568 - MGP_CASTEiJ_P0000133 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000029.1 MGP_CASTEiJ_G0000023.1 mouse_genomes_project 12 110237220 110237237 - MGP_CASTEiJ_P0000029 IG_D_gene IG_D_gene MGP_CASTEiJ_T0003303.1 MGP_CASTEiJ_G0003043.1 mouse_genomes_project 12 86634462 86660607 + 5430427M07Rik antisense antisense MGP_CASTEiJ_T0034891.1 MGP_CASTEiJ_G0019194.1 mouse_genomes_project 12 76375116 76380851 - MGP_CASTEiJ_P0034891 Adam4 protein_coding protein_coding MGP_CASTEiJ_T0034913.1 MGP_CASTEiJ_G0019199.1 mouse_genomes_project 12 76683447 76757491 - MGP_CASTEiJ_P0034913 Map3k9 protein_coding protein_coding MGP_CASTEiJ_T0034914.1 MGP_CASTEiJ_G0019199.1 mouse_genomes_project 12 76687236 76757333 - MGP_CASTEiJ_P0034914 Map3k9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0000222.1 MGP_CASTEiJ_G0000171.1 mouse_genomes_project 12 110497405 110497886 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0034721.1 MGP_CASTEiJ_G0019127.1 mouse_genomes_project 12 67542348 67545177 - Six1 protein_coding processed_transcript MGP_CASTEiJ_T0034722.1 MGP_CASTEiJ_G0019127.1 mouse_genomes_project 12 67544188 67549542 - MGP_CASTEiJ_P0034722 Six1 protein_coding protein_coding MGP_CASTEiJ_T0034723.1 MGP_CASTEiJ_G0019127.1 mouse_genomes_project 12 67545892 67556250 - Six1 protein_coding processed_transcript MGP_CASTEiJ_T0034724.1 MGP_CASTEiJ_G0019127.1 mouse_genomes_project 12 67546135 67547654 - Six1 protein_coding processed_transcript MGP_CASTEiJ_T0003280.1 MGP_CASTEiJ_G0003024.1 mouse_genomes_project 12 47766086 47783282 - 1700060O08Rik antisense antisense MGP_CASTEiJ_T0102025.1 MGP_CASTEiJ_G0038750.1 mouse_genomes_project 12 99947084 99953094 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0035426.1 MGP_CASTEiJ_G0019339.1 mouse_genomes_project 12 99244293 99262107 - MGP_CASTEiJ_P0035426 Ddx24 protein_coding protein_coding MGP_CASTEiJ_T0035427.1 MGP_CASTEiJ_G0019339.1 mouse_genomes_project 12 99244293 99262194 - MGP_CASTEiJ_P0035427 Ddx24 protein_coding protein_coding MGP_CASTEiJ_T0009628.1 MGP_CASTEiJ_G0007816.1 mouse_genomes_project 12 106200353 106200424 + Mir134 miRNA miRNA MGP_CASTEiJ_T0006228.1 MGP_CASTEiJ_G0005203.1 mouse_genomes_project 12 5994028 5998313 - 9930038B18Rik lincRNA lincRNA MGP_CASTEiJ_T0100488.1 MGP_CASTEiJ_G0037401.1 mouse_genomes_project 12 10396112 10396247 - Gm24208 snoRNA snoRNA MGP_CASTEiJ_T0034239.1 MGP_CASTEiJ_G0018959.1 mouse_genomes_project 12 23959328 23965175 + MGP_CASTEiJ_P0034239 Fam110c protein_coding protein_coding MGP_CASTEiJ_T0009573.1 MGP_CASTEiJ_G0007761.1 mouse_genomes_project 12 105068684 105068783 + Mir342 miRNA miRNA MGP_CASTEiJ_T0003294.1 MGP_CASTEiJ_G0003034.1 mouse_genomes_project 12 75588305 75594285 - Plekhd1os antisense antisense MGP_CASTEiJ_T0100495.1 MGP_CASTEiJ_G0037408.1 mouse_genomes_project 12 26484987 26485119 - Gm23529 snoRNA snoRNA MGP_CASTEiJ_T0098480.1 MGP_CASTEiJ_G0035411.1 mouse_genomes_project 12 48395425 48395535 - Gm24971 rRNA rRNA MGP_CASTEiJ_T0035073.1 MGP_CASTEiJ_G0019241.1 mouse_genomes_project 12 80141263 80154035 + MGP_CASTEiJ_P0035073 Fcf1 protein_coding protein_coding MGP_CASTEiJ_T0035074.1 MGP_CASTEiJ_G0019241.1 mouse_genomes_project 12 80141347 80154023 + MGP_CASTEiJ_P0035074 Fcf1 protein_coding protein_coding MGP_CASTEiJ_T0035075.1 MGP_CASTEiJ_G0019241.1 mouse_genomes_project 12 80150940 80154029 + Fcf1 protein_coding retained_intron MGP_CASTEiJ_T0035322.1 MGP_CASTEiJ_G0019307.1 mouse_genomes_project 12 96255720 96380597 - MGP_CASTEiJ_P0035322 Ttc7b protein_coding unknown_likely_coding MGP_CASTEiJ_T0035323.1 MGP_CASTEiJ_G0019307.1 mouse_genomes_project 12 96255722 96478852 - MGP_CASTEiJ_P0035323 Ttc7b protein_coding protein_coding MGP_CASTEiJ_T0035324.1 MGP_CASTEiJ_G0019307.1 mouse_genomes_project 12 96256205 96478814 - MGP_CASTEiJ_P0035324 Ttc7b protein_coding unknown_likely_coding MGP_CASTEiJ_T0034313.1 MGP_CASTEiJ_G0018980.1 mouse_genomes_project 12 26979657 26980543 + MGP_CASTEiJ_P0034313 Ferd3l protein_coding protein_coding MGP_CASTEiJ_T0034759.1 MGP_CASTEiJ_G0019142.1 mouse_genomes_project 12 70085624 70238601 - MGP_CASTEiJ_P0034759 Ppp2r5e protein_coding protein_coding MGP_CASTEiJ_T0034748.1 MGP_CASTEiJ_G0019137.1 mouse_genomes_project 12 68565068 68842133 + MGP_CASTEiJ_P0034748 Syt16 protein_coding protein_coding MGP_CASTEiJ_T0034749.1 MGP_CASTEiJ_G0019137.1 mouse_genomes_project 12 68733729 68841167 + MGP_CASTEiJ_P0034749 Syt16 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034004.1 MGP_CASTEiJ_G0018878.1 mouse_genomes_project 12 1766531 1774945 - MGP_CASTEiJ_P0034004 Fkbp1b protein_coding protein_coding MGP_CASTEiJ_T0034191.1 MGP_CASTEiJ_G0018940.1 mouse_genomes_project 12 19174791 19188497 - MGP_CASTEiJ_P0034191 Rsad2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034192.1 MGP_CASTEiJ_G0018940.1 mouse_genomes_project 12 19174791 19188518 - MGP_CASTEiJ_P0034192 Rsad2 protein_coding protein_coding MGP_CASTEiJ_T0034193.1 MGP_CASTEiJ_G0018940.1 mouse_genomes_project 12 19182692 19186911 - Rsad2 protein_coding processed_transcript MGP_CASTEiJ_T0035493.1 MGP_CASTEiJ_G0019373.1 mouse_genomes_project 12 101287047 101293005 - MGP_CASTEiJ_P0035493 Tcl1 protein_coding protein_coding MGP_CASTEiJ_T0035494.1 MGP_CASTEiJ_G0019373.1 mouse_genomes_project 12 101287055 101292984 - MGP_CASTEiJ_P0035494 Tcl1 protein_coding protein_coding MGP_CASTEiJ_T0035495.1 MGP_CASTEiJ_G0019373.1 mouse_genomes_project 12 101287537 101292974 - MGP_CASTEiJ_P0035495 Tcl1 protein_coding protein_coding MGP_CASTEiJ_T0035496.1 MGP_CASTEiJ_G0019373.1 mouse_genomes_project 12 101287727 101293061 - MGP_CASTEiJ_P0035496 Tcl1 protein_coding protein_coding MGP_CASTEiJ_T0035497.1 MGP_CASTEiJ_G0019373.1 mouse_genomes_project 12 101287823 101292964 - MGP_CASTEiJ_P0035497 Tcl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035498.1 MGP_CASTEiJ_G0019373.1 mouse_genomes_project 12 101288518 101292893 - Tcl1 protein_coding processed_transcript MGP_CASTEiJ_T0100540.1 MGP_CASTEiJ_G0037453.1 mouse_genomes_project 12 106136626 106136710 + Gm23347 snoRNA snoRNA MGP_CASTEiJ_T0034558.1 MGP_CASTEiJ_G0019069.1 mouse_genomes_project 12 56713305 56713728 + MGP_CASTEiJ_P0034558 Spanxn4 protein_coding protein_coding MGP_CASTEiJ_T0009538.1 MGP_CASTEiJ_G0007726.1 mouse_genomes_project 12 23426493 23426700 - Gm25243 miRNA miRNA MGP_CASTEiJ_T0034369.1 MGP_CASTEiJ_G0019002.1 mouse_genomes_project 12 33575750 33596573 - MGP_CASTEiJ_P0034369 Lsmem1 protein_coding protein_coding MGP_CASTEiJ_T0034328.1 MGP_CASTEiJ_G0018988.1 mouse_genomes_project 12 29155275 29160384 + Agr2 protein_coding retained_intron MGP_CASTEiJ_T0034329.1 MGP_CASTEiJ_G0018988.1 mouse_genomes_project 12 29155275 29167452 + MGP_CASTEiJ_P0034329 Agr2 protein_coding protein_coding MGP_CASTEiJ_T0006284.1 MGP_CASTEiJ_G0005250.1 mouse_genomes_project 12 100965944 100966628 - Gm28875 lincRNA lincRNA MGP_CASTEiJ_T0035346.1 MGP_CASTEiJ_G0019313.1 mouse_genomes_project 12 97151700 97356929 + MGP_CASTEiJ_P0035346 Catsperb protein_coding protein_coding MGP_CASTEiJ_T0035396.1 MGP_CASTEiJ_G0019330.1 mouse_genomes_project 12 98556714 98578509 + MGP_CASTEiJ_P0035396 Ubr7 protein_coding protein_coding MGP_CASTEiJ_T0012443.1 MGP_CASTEiJ_G0010606.1 mouse_genomes_project 12 42745555 42746557 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034708.1 MGP_CASTEiJ_G0019121.1 mouse_genomes_project 12 66996300 67041533 + MGP_CASTEiJ_P0034708 Pcnx4 protein_coding protein_coding MGP_CASTEiJ_T0006320.1 MGP_CASTEiJ_G0005271.1 mouse_genomes_project 12 106195970 106215378 + Mirg lincRNA lincRNA MGP_CASTEiJ_T0006321.1 MGP_CASTEiJ_G0005271.1 mouse_genomes_project 12 106195971 106197045 + Mirg lincRNA lincRNA MGP_CASTEiJ_T0006322.1 MGP_CASTEiJ_G0005271.1 mouse_genomes_project 12 106196475 106215378 + Mirg lincRNA lincRNA MGP_CASTEiJ_T0006323.1 MGP_CASTEiJ_G0005271.1 mouse_genomes_project 12 106197162 106215380 + Mirg lincRNA lincRNA MGP_CASTEiJ_T0006324.1 MGP_CASTEiJ_G0005271.1 mouse_genomes_project 12 106201195 106215378 + Mirg lincRNA lincRNA MGP_CASTEiJ_T0006325.1 MGP_CASTEiJ_G0005271.1 mouse_genomes_project 12 106201195 106209926 + Mirg lincRNA lincRNA MGP_CASTEiJ_T0006326.1 MGP_CASTEiJ_G0005271.1 mouse_genomes_project 12 106201199 106214088 + Mirg lincRNA lincRNA MGP_CASTEiJ_T0006327.1 MGP_CASTEiJ_G0005271.1 mouse_genomes_project 12 106203890 106206249 + Mirg lincRNA lincRNA MGP_CASTEiJ_T0006328.1 MGP_CASTEiJ_G0005271.1 mouse_genomes_project 12 106203968 106207691 + Mirg lincRNA lincRNA MGP_CASTEiJ_T0006329.1 MGP_CASTEiJ_G0005271.1 mouse_genomes_project 12 106209993 106215378 + Mirg lincRNA lincRNA MGP_CASTEiJ_T0006330.1 MGP_CASTEiJ_G0005271.1 mouse_genomes_project 12 106213811 106215375 + Mirg lincRNA lincRNA MGP_CASTEiJ_T0006331.1 MGP_CASTEiJ_G0005271.1 mouse_genomes_project 12 106213872 106215378 + Mirg lincRNA lincRNA MGP_CASTEiJ_T0034883.1 MGP_CASTEiJ_G0019191.1 mouse_genomes_project 12 76142606 76284292 - MGP_CASTEiJ_P0034883 Slc8a3 protein_coding protein_coding MGP_CASTEiJ_T0034884.1 MGP_CASTEiJ_G0019191.1 mouse_genomes_project 12 76142974 76284087 - MGP_CASTEiJ_P0034884 Slc8a3 protein_coding protein_coding MGP_CASTEiJ_T0034885.1 MGP_CASTEiJ_G0019191.1 mouse_genomes_project 12 76144150 76284308 - MGP_CASTEiJ_P0034885 Slc8a3 protein_coding protein_coding MGP_CASTEiJ_T0034886.1 MGP_CASTEiJ_G0019191.1 mouse_genomes_project 12 76147101 76239486 - MGP_CASTEiJ_P0034886 Slc8a3 protein_coding protein_coding MGP_CASTEiJ_T0034887.1 MGP_CASTEiJ_G0019191.1 mouse_genomes_project 12 76158758 76284308 - Slc8a3 protein_coding retained_intron MGP_CASTEiJ_T0034311.1 MGP_CASTEiJ_G0018978.1 mouse_genomes_project 12 26420796 26428747 + MGP_CASTEiJ_P0034311 Efcab10 protein_coding protein_coding MGP_CASTEiJ_T0034987.1 MGP_CASTEiJ_G0019213.1 mouse_genomes_project 12 79022334 79055247 - MGP_CASTEiJ_P0034987 Heatr4 protein_coding protein_coding MGP_CASTEiJ_T0009610.1 MGP_CASTEiJ_G0007798.1 mouse_genomes_project 12 106181919 106182040 + Mir1193 miRNA miRNA MGP_CASTEiJ_T0035530.1 MGP_CASTEiJ_G0019382.1 mouse_genomes_project 12 103785655 103786658 + MGP_CASTEiJ_P0035530 protein_coding protein_coding MGP_CASTEiJ_T0006229.1 MGP_CASTEiJ_G0005204.1 mouse_genomes_project 12 6732498 6737902 - 1700022H16Rik lincRNA lincRNA MGP_CASTEiJ_T0034408.1 MGP_CASTEiJ_G0019014.1 mouse_genomes_project 12 42946077 42947384 + Foxg1 protein_coding processed_transcript MGP_CASTEiJ_T0034409.1 MGP_CASTEiJ_G0019014.1 mouse_genomes_project 12 42946217 42947021 + Foxg1 protein_coding processed_transcript MGP_CASTEiJ_T0034410.1 MGP_CASTEiJ_G0019014.1 mouse_genomes_project 12 42946300 42950099 + MGP_CASTEiJ_P0034410 Foxg1 protein_coding protein_coding MGP_CASTEiJ_T0034411.1 MGP_CASTEiJ_G0019014.1 mouse_genomes_project 12 42946424 42949881 + MGP_CASTEiJ_P0034411 Foxg1 protein_coding protein_coding MGP_CASTEiJ_T0000082.1 MGP_CASTEiJ_G0000065.1 mouse_genomes_project 12 110899681 110900112 - MGP_CASTEiJ_P0000082 Ighv3-6 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000083.1 MGP_CASTEiJ_G0000065.1 mouse_genomes_project 12 110899686 110900112 - MGP_CASTEiJ_P0000083 Ighv3-6 IG_V_gene IG_V_gene MGP_CASTEiJ_T0033994.1 MGP_CASTEiJ_G0018870.1 mouse_genomes_project 12 1143901 1390956 - MGP_CASTEiJ_P0033994 Ncoa1 protein_coding protein_coding MGP_CASTEiJ_T0035158.1 MGP_CASTEiJ_G0019266.1 mouse_genomes_project 12 82035035 82065456 + MGP_CASTEiJ_P0035158 Lrrc74a protein_coding protein_coding MGP_CASTEiJ_T0009639.1 MGP_CASTEiJ_G0007827.1 mouse_genomes_project 12 106209610 106209689 + Mir369 miRNA miRNA MGP_CASTEiJ_T0034620.1 MGP_CASTEiJ_G0019095.1 mouse_genomes_project 12 64060704 64088715 + MGP_CASTEiJ_P0034620 Atp5s protein_coding unknown_likely_coding MGP_CASTEiJ_T0000832.1 MGP_CASTEiJ_G0000772.1 mouse_genomes_project 12 108902777 108906864 - TEC TEC MGP_CASTEiJ_T0035740.1 MGP_CASTEiJ_G0019453.1 mouse_genomes_project 12 109681756 109696116 + MGP_CASTEiJ_P0035740 Tex22 protein_coding protein_coding MGP_CASTEiJ_T0035741.1 MGP_CASTEiJ_G0019453.1 mouse_genomes_project 12 109681756 109696114 + MGP_CASTEiJ_P0035741 Tex22 protein_coding protein_coding MGP_CASTEiJ_T0035742.1 MGP_CASTEiJ_G0019453.1 mouse_genomes_project 12 109682010 109696117 + MGP_CASTEiJ_P0035742 Tex22 protein_coding protein_coding MGP_CASTEiJ_T0035743.1 MGP_CASTEiJ_G0019453.1 mouse_genomes_project 12 109682032 109682626 + MGP_CASTEiJ_P0035743 Tex22 protein_coding protein_coding MGP_CASTEiJ_T0034805.1 MGP_CASTEiJ_G0019158.1 mouse_genomes_project 12 71480419 71647765 + MGP_CASTEiJ_P0034805 Fntb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034806.1 MGP_CASTEiJ_G0019158.1 mouse_genomes_project 12 71480428 71647339 + MGP_CASTEiJ_P0034806 Fntb protein_coding protein_coding MGP_CASTEiJ_T0034815.1 MGP_CASTEiJ_G0019158.1 mouse_genomes_project 12 71556222 71648518 + MGP_CASTEiJ_P0034815 Fntb protein_coding protein_coding MGP_CASTEiJ_T0034816.1 MGP_CASTEiJ_G0019158.1 mouse_genomes_project 12 71556241 71565571 + Fntb protein_coding processed_transcript MGP_CASTEiJ_T0034817.1 MGP_CASTEiJ_G0019158.1 mouse_genomes_project 12 71559097 71615333 + Fntb protein_coding processed_transcript MGP_CASTEiJ_T0034818.1 MGP_CASTEiJ_G0019158.1 mouse_genomes_project 12 71614585 71637884 + Fntb protein_coding processed_transcript MGP_CASTEiJ_T0034819.1 MGP_CASTEiJ_G0019158.1 mouse_genomes_project 12 71637139 71637963 + Fntb protein_coding processed_transcript MGP_CASTEiJ_T0034820.1 MGP_CASTEiJ_G0019158.1 mouse_genomes_project 12 71637629 71642265 + Fntb protein_coding retained_intron MGP_CASTEiJ_T0034863.1 MGP_CASTEiJ_G0019183.1 mouse_genomes_project 12 75531824 75544424 - MGP_CASTEiJ_P0034863 Erh protein_coding protein_coding MGP_CASTEiJ_T0100516.1 MGP_CASTEiJ_G0037429.1 mouse_genomes_project 12 67654598 67654730 - Gm23910 snoRNA snoRNA MGP_CASTEiJ_T0000096.1 MGP_CASTEiJ_G0000075.1 mouse_genomes_project 12 111128677 111129180 - MGP_CASTEiJ_P0000096 Ighv1-5 IG_V_gene IG_V_gene MGP_CASTEiJ_T0009541.1 MGP_CASTEiJ_G0007729.1 mouse_genomes_project 12 30009108 30009182 + Mir5099 miRNA miRNA MGP_CASTEiJ_T0100535.1 MGP_CASTEiJ_G0037448.1 mouse_genomes_project 12 106116381 106116453 + Gm23508 snoRNA snoRNA MGP_CASTEiJ_T0100548.1 MGP_CASTEiJ_G0037461.1 mouse_genomes_project 12 106152737 106152808 + Gm22205 snoRNA snoRNA MGP_CASTEiJ_T0035774.1 MGP_CASTEiJ_G0019459.1 mouse_genomes_project 12 110256292 110259775 + MGP_CASTEiJ_P0035774 protein_coding protein_coding MGP_CASTEiJ_T0034512.1 MGP_CASTEiJ_G0019059.1 mouse_genomes_project 12 52050778 52052896 + MGP_CASTEiJ_P0034512 Sstr1 protein_coding protein_coding MGP_CASTEiJ_T0034513.1 MGP_CASTEiJ_G0019059.1 mouse_genomes_project 12 52050810 52053452 + MGP_CASTEiJ_P0034513 Sstr1 protein_coding protein_coding MGP_CASTEiJ_T0034514.1 MGP_CASTEiJ_G0019059.1 mouse_genomes_project 12 52051487 52055046 + MGP_CASTEiJ_P0034514 Sstr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034214.1 MGP_CASTEiJ_G0018952.1 mouse_genomes_project 12 22790675 22871979 + MGP_CASTEiJ_P0034214 Pxdn protein_coding protein_coding MGP_CASTEiJ_T0034215.1 MGP_CASTEiJ_G0018952.1 mouse_genomes_project 12 22790689 22842952 + Pxdn protein_coding retained_intron MGP_CASTEiJ_T0034216.1 MGP_CASTEiJ_G0018952.1 mouse_genomes_project 12 22790689 22842399 + MGP_CASTEiJ_P0034216 Pxdn protein_coding protein_coding MGP_CASTEiJ_T0034217.1 MGP_CASTEiJ_G0018952.1 mouse_genomes_project 12 22849856 22855754 + Pxdn protein_coding processed_transcript MGP_CASTEiJ_T0034218.1 MGP_CASTEiJ_G0018952.1 mouse_genomes_project 12 22849862 22853210 + Pxdn protein_coding retained_intron MGP_CASTEiJ_T0034219.1 MGP_CASTEiJ_G0018952.1 mouse_genomes_project 12 22853238 22855896 + Pxdn protein_coding retained_intron MGP_CASTEiJ_T0035443.1 MGP_CASTEiJ_G0019343.1 mouse_genomes_project 12 99438293 99449035 - MGP_CASTEiJ_P0035443 Serpina10 protein_coding protein_coding MGP_CASTEiJ_T0035444.1 MGP_CASTEiJ_G0019343.1 mouse_genomes_project 12 99440162 99449012 - MGP_CASTEiJ_P0035444 Serpina10 protein_coding protein_coding MGP_CASTEiJ_T0000065.1 MGP_CASTEiJ_G0000053.1 mouse_genomes_project 12 110451380 110477310 - MGP_CASTEiJ_P0000065 IG_V_gene IG_V_gene MGP_CASTEiJ_T0009604.1 MGP_CASTEiJ_G0007792.1 mouse_genomes_project 12 106178573 106178693 + Mir1197 miRNA miRNA MGP_CASTEiJ_T0006255.1 MGP_CASTEiJ_G0005225.1 mouse_genomes_project 12 64605602 64611858 + F730035M05Rik lincRNA lincRNA MGP_CASTEiJ_T0035600.1 MGP_CASTEiJ_G0019402.1 mouse_genomes_project 12 107111595 107126912 - MGP_CASTEiJ_P0035600 1700001K19Rik protein_coding protein_coding MGP_CASTEiJ_T0034392.1 MGP_CASTEiJ_G0019008.1 mouse_genomes_project 12 34898085 34931486 - MGP_CASTEiJ_P0034392 Lrrn3 protein_coding protein_coding MGP_CASTEiJ_T0035488.1 MGP_CASTEiJ_G0019368.1 mouse_genomes_project 12 101198853 101240157 + MGP_CASTEiJ_P0035488 protein_coding protein_coding MGP_CASTEiJ_T0035805.1 MGP_CASTEiJ_G0019470.1 mouse_genomes_project 12 114419683 114488968 - MGP_CASTEiJ_P0035805 Sp4 protein_coding protein_coding MGP_CASTEiJ_T0034380.1 MGP_CASTEiJ_G0019004.1 mouse_genomes_project 12 33620529 33623033 + MGP_CASTEiJ_P0034380 Gm7008 protein_coding protein_coding MGP_CASTEiJ_T0034381.1 MGP_CASTEiJ_G0019004.1 mouse_genomes_project 12 33621135 33627588 + MGP_CASTEiJ_P0034381 Gm7008 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034382.1 MGP_CASTEiJ_G0019004.1 mouse_genomes_project 12 33621200 33627573 + MGP_CASTEiJ_P0034382 Gm7008 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0010999.1 MGP_CASTEiJ_G0009187.1 mouse_genomes_project 12 65326010 65326320 + Gm24857 misc_RNA misc_RNA MGP_CASTEiJ_T0003279.1 MGP_CASTEiJ_G0003023.1 mouse_genomes_project 12 33606734 33608323 - Gm17024 antisense antisense MGP_CASTEiJ_T0099315.1 MGP_CASTEiJ_G0036228.1 mouse_genomes_project 12 64354042 64354144 - Gm23579 snRNA snRNA MGP_CASTEiJ_T0000240.1 MGP_CASTEiJ_G0000189.1 mouse_genomes_project 12 111184022 111184313 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0034622.1 MGP_CASTEiJ_G0019097.1 mouse_genomes_project 12 64153264 64246133 - Map4k5 protein_coding processed_transcript MGP_CASTEiJ_T0034623.1 MGP_CASTEiJ_G0019097.1 mouse_genomes_project 12 64153264 64246039 - MGP_CASTEiJ_P0034623 Map4k5 protein_coding protein_coding MGP_CASTEiJ_T0034624.1 MGP_CASTEiJ_G0019097.1 mouse_genomes_project 12 64153264 64246230 - MGP_CASTEiJ_P0034624 Map4k5 protein_coding protein_coding MGP_CASTEiJ_T0034625.1 MGP_CASTEiJ_G0019097.1 mouse_genomes_project 12 64153273 64246193 - MGP_CASTEiJ_P0034625 Map4k5 protein_coding protein_coding MGP_CASTEiJ_T0034626.1 MGP_CASTEiJ_G0019097.1 mouse_genomes_project 12 64153273 64246133 - MGP_CASTEiJ_P0034626 Map4k5 protein_coding protein_coding MGP_CASTEiJ_T0034627.1 MGP_CASTEiJ_G0019097.1 mouse_genomes_project 12 64153275 64168679 - Map4k5 protein_coding retained_intron MGP_CASTEiJ_T0034628.1 MGP_CASTEiJ_G0019097.1 mouse_genomes_project 12 64168007 64169077 - Map4k5 protein_coding processed_transcript MGP_CASTEiJ_T0034629.1 MGP_CASTEiJ_G0019097.1 mouse_genomes_project 12 64194938 64226196 - Map4k5 protein_coding retained_intron MGP_CASTEiJ_T0034630.1 MGP_CASTEiJ_G0019097.1 mouse_genomes_project 12 64199486 64246153 - Map4k5 protein_coding retained_intron MGP_CASTEiJ_T0034631.1 MGP_CASTEiJ_G0019097.1 mouse_genomes_project 12 64199956 64208232 - Map4k5 protein_coding retained_intron MGP_CASTEiJ_T0006265.1 MGP_CASTEiJ_G0005231.1 mouse_genomes_project 12 75400672 75409642 - Gm26777 lincRNA lincRNA MGP_CASTEiJ_T0003272.1 MGP_CASTEiJ_G0003016.1 mouse_genomes_project 12 597988 609237 - Dtnbos antisense antisense MGP_CASTEiJ_T0000019.1 MGP_CASTEiJ_G0000014.1 mouse_genomes_project 12 109987681 109989847 + IG_C_pseudogene IG_C_pseudogene MGP_CASTEiJ_T0006275.1 MGP_CASTEiJ_G0005241.1 mouse_genomes_project 12 86326056 86339171 + Gm26512 lincRNA lincRNA MGP_CASTEiJ_T0006244.1 MGP_CASTEiJ_G0005216.1 mouse_genomes_project 12 25908426 25944908 - 4933406C10Rik lincRNA lincRNA MGP_CASTEiJ_T0006245.1 MGP_CASTEiJ_G0005216.1 mouse_genomes_project 12 25913799 25944902 - 4933406C10Rik lincRNA lincRNA MGP_CASTEiJ_T0009652.1 MGP_CASTEiJ_G0007840.1 mouse_genomes_project 12 112247532 112247662 - Gm44372 miRNA miRNA MGP_CASTEiJ_T0035658.1 MGP_CASTEiJ_G0019422.1 mouse_genomes_project 12 108181268 108189626 + MGP_CASTEiJ_P0035658 Trmt61a protein_coding protein_coding MGP_CASTEiJ_T0035659.1 MGP_CASTEiJ_G0019422.1 mouse_genomes_project 12 108181268 108189626 + MGP_CASTEiJ_P0035659 Trmt61a protein_coding protein_coding MGP_CASTEiJ_T0099294.1 MGP_CASTEiJ_G0036207.1 mouse_genomes_project 12 12152829 12152933 + Gm26449 snRNA snRNA MGP_CASTEiJ_T0009588.1 MGP_CASTEiJ_G0007776.1 mouse_genomes_project 12 106045772 106045842 + Mir127 miRNA miRNA MGP_CASTEiJ_T0012459.1 MGP_CASTEiJ_G0010622.1 mouse_genomes_project 12 57116423 57116720 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098477.1 MGP_CASTEiJ_G0035408.1 mouse_genomes_project 12 21848228 21848343 - Gm23342 rRNA rRNA MGP_CASTEiJ_T0034465.1 MGP_CASTEiJ_G0019040.1 mouse_genomes_project 12 48905060 48920897 + MGP_CASTEiJ_P0034465 protein_coding protein_coding MGP_CASTEiJ_T0100517.1 MGP_CASTEiJ_G0037430.1 mouse_genomes_project 12 72572688 72572818 - Gm24070 snoRNA snoRNA MGP_CASTEiJ_T0000214.1 MGP_CASTEiJ_G0000163.1 mouse_genomes_project 12 110290784 110291259 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0098744.1 MGP_CASTEiJ_G0035675.1 mouse_genomes_project 12 101086019 101086294 - Scarna13 scaRNA scaRNA MGP_CASTEiJ_T0035065.1 MGP_CASTEiJ_G0019239.1 mouse_genomes_project 12 80042618 80044982 + MGP_CASTEiJ_P0035065 D030025P21Rik protein_coding protein_coding MGP_CASTEiJ_T0006281.1 MGP_CASTEiJ_G0005247.1 mouse_genomes_project 12 96913101 96921446 + A630072L19Rik lincRNA lincRNA MGP_CASTEiJ_T0100525.1 MGP_CASTEiJ_G0037438.1 mouse_genomes_project 12 87130694 87130837 - Gm25776 snoRNA snoRNA MGP_CASTEiJ_T0033979.1 MGP_CASTEiJ_G0018867.1 mouse_genomes_project 12 1028126 1110118 + Adcy3 protein_coding retained_intron MGP_CASTEiJ_T0033980.1 MGP_CASTEiJ_G0018867.1 mouse_genomes_project 12 1028127 1110118 + MGP_CASTEiJ_P0033980 Adcy3 protein_coding protein_coding MGP_CASTEiJ_T0033981.1 MGP_CASTEiJ_G0018867.1 mouse_genomes_project 12 1028420 1110118 + MGP_CASTEiJ_P0033981 Adcy3 protein_coding protein_coding MGP_CASTEiJ_T0033982.1 MGP_CASTEiJ_G0018867.1 mouse_genomes_project 12 1028425 1110117 + MGP_CASTEiJ_P0033982 Adcy3 protein_coding protein_coding MGP_CASTEiJ_T0033983.1 MGP_CASTEiJ_G0018867.1 mouse_genomes_project 12 1029176 1110117 + MGP_CASTEiJ_P0033983 Adcy3 protein_coding protein_coding MGP_CASTEiJ_T0033984.1 MGP_CASTEiJ_G0018867.1 mouse_genomes_project 12 1055044 1077365 + Adcy3 protein_coding processed_transcript MGP_CASTEiJ_T0033985.1 MGP_CASTEiJ_G0018867.1 mouse_genomes_project 12 1091631 1093703 + Adcy3 protein_coding retained_intron MGP_CASTEiJ_T0033988.1 MGP_CASTEiJ_G0018867.1 mouse_genomes_project 12 1100049 1103040 + Adcy3 protein_coding retained_intron MGP_CASTEiJ_T0100524.1 MGP_CASTEiJ_G0037437.1 mouse_genomes_project 12 86401171 86401300 + Gm23195 snoRNA snoRNA MGP_CASTEiJ_T0009615.1 MGP_CASTEiJ_G0007803.1 mouse_genomes_project 12 106188890 106188976 + Mir376c miRNA miRNA MGP_CASTEiJ_T0000140.1 MGP_CASTEiJ_G0000107.1 mouse_genomes_project 12 112104933 112105227 - MGP_CASTEiJ_P0000140 Ighv1-67 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000141.1 MGP_CASTEiJ_G0000107.1 mouse_genomes_project 12 112104933 112105366 - MGP_CASTEiJ_P0000141 Ighv1-67 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000216.1 MGP_CASTEiJ_G0000165.1 mouse_genomes_project 12 110462660 110462986 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0006227.1 MGP_CASTEiJ_G0005202.1 mouse_genomes_project 12 5874886 5882583 - Gm4755 lincRNA lincRNA MGP_CASTEiJ_T0006318.1 MGP_CASTEiJ_G0005269.1 mouse_genomes_project 12 106094666 106096661 + Gm26945 lincRNA lincRNA MGP_CASTEiJ_T0034590.1 MGP_CASTEiJ_G0019082.1 mouse_genomes_project 12 63495736 63496992 - MGP_CASTEiJ_P0034590 Rpl36al protein_coding protein_coding MGP_CASTEiJ_T0034591.1 MGP_CASTEiJ_G0019082.1 mouse_genomes_project 12 63495743 63497019 - MGP_CASTEiJ_P0034591 Rpl36al protein_coding protein_coding MGP_CASTEiJ_T0034592.1 MGP_CASTEiJ_G0019082.1 mouse_genomes_project 12 63495746 63497089 - MGP_CASTEiJ_P0034592 Rpl36al protein_coding protein_coding MGP_CASTEiJ_T0099321.1 MGP_CASTEiJ_G0036234.1 mouse_genomes_project 12 73921691 73921796 - Gm27297 snRNA snRNA MGP_CASTEiJ_T0006270.1 MGP_CASTEiJ_G0005236.1 mouse_genomes_project 12 81417280 81445181 + Gm805 lincRNA lincRNA MGP_CASTEiJ_T0098486.1 MGP_CASTEiJ_G0035417.1 mouse_genomes_project 12 80938852 80938971 - n-R5s64 rRNA rRNA MGP_CASTEiJ_T0034091.1 MGP_CASTEiJ_G0018911.1 mouse_genomes_project 12 13098405 13123463 - MGP_CASTEiJ_P0034091 Trib2 protein_coding protein_coding MGP_CASTEiJ_T0034092.1 MGP_CASTEiJ_G0018911.1 mouse_genomes_project 12 13122556 13123555 - Trib2 protein_coding processed_transcript MGP_CASTEiJ_T0098332.1 MGP_CASTEiJ_G0035263.1 mouse_genomes_project 12 79538942 79540326 + pseudogene pseudogene MGP_CASTEiJ_T0009638.1 MGP_CASTEiJ_G0007826.1 mouse_genomes_project 12 106209481 106209561 + Mir412 miRNA miRNA MGP_CASTEiJ_T0000097.1 MGP_CASTEiJ_G0000076.1 mouse_genomes_project 12 111142225 111142690 - MGP_CASTEiJ_P0000097 IG_V_gene IG_V_gene MGP_CASTEiJ_T0033921.1 MGP_CASTEiJ_G0018858.1 mouse_genomes_project 12 60410 125407 - MGP_CASTEiJ_P0033921 Rab10 protein_coding protein_coding MGP_CASTEiJ_T0034646.1 MGP_CASTEiJ_G0019103.1 mouse_genomes_project 12 64559861 64605346 - MGP_CASTEiJ_P0034646 Pygl protein_coding protein_coding MGP_CASTEiJ_T0034647.1 MGP_CASTEiJ_G0019103.1 mouse_genomes_project 12 64566785 64567228 - Pygl protein_coding processed_transcript MGP_CASTEiJ_T0034648.1 MGP_CASTEiJ_G0019103.1 mouse_genomes_project 12 64582951 64605375 - Pygl protein_coding retained_intron MGP_CASTEiJ_T0034649.1 MGP_CASTEiJ_G0019103.1 mouse_genomes_project 12 64586440 64605108 - Pygl protein_coding processed_transcript MGP_CASTEiJ_T0100530.1 MGP_CASTEiJ_G0037443.1 mouse_genomes_project 12 106095347 106095406 + Gm24899 snoRNA snoRNA MGP_CASTEiJ_T0009564.1 MGP_CASTEiJ_G0007752.1 mouse_genomes_project 12 82830329 82830408 - Mir3068 miRNA miRNA MGP_CASTEiJ_T0000248.1 MGP_CASTEiJ_G0000197.1 mouse_genomes_project 12 111532004 111532432 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0034849.1 MGP_CASTEiJ_G0019175.1 mouse_genomes_project 12 74022201 74036853 + MGP_CASTEiJ_P0034849 Rdh12 protein_coding protein_coding MGP_CASTEiJ_T0034850.1 MGP_CASTEiJ_G0019175.1 mouse_genomes_project 12 74022218 74036852 + MGP_CASTEiJ_P0034850 Rdh12 protein_coding protein_coding MGP_CASTEiJ_T0034851.1 MGP_CASTEiJ_G0019175.1 mouse_genomes_project 12 74022234 74036852 + Rdh12 protein_coding retained_intron MGP_CASTEiJ_T0034852.1 MGP_CASTEiJ_G0019175.1 mouse_genomes_project 12 74023949 74026100 + MGP_CASTEiJ_P0034852 Rdh12 protein_coding protein_coding MGP_CASTEiJ_T0006299.1 MGP_CASTEiJ_G0005261.1 mouse_genomes_project 12 103456422 103460326 + Gm2800 lincRNA lincRNA MGP_CASTEiJ_T0035351.1 MGP_CASTEiJ_G0019315.1 mouse_genomes_project 12 97474401 97551269 - MGP_CASTEiJ_P0035351 Fbln5 protein_coding protein_coding MGP_CASTEiJ_T0000822.1 MGP_CASTEiJ_G0000762.1 mouse_genomes_project 12 67448613 67449425 + TEC TEC MGP_CASTEiJ_T0009630.1 MGP_CASTEiJ_G0007818.1 mouse_genomes_project 12 106201116 106201189 + Mir485 miRNA miRNA MGP_CASTEiJ_T0100519.1 MGP_CASTEiJ_G0037432.1 mouse_genomes_project 12 76465618 76465746 + snoRNA snoRNA MGP_CASTEiJ_T0034233.1 MGP_CASTEiJ_G0018957.1 mouse_genomes_project 12 23773435 23791541 - MGP_CASTEiJ_P0034233 Acp1 protein_coding protein_coding MGP_CASTEiJ_T0034234.1 MGP_CASTEiJ_G0018957.1 mouse_genomes_project 12 23773435 23791541 - MGP_CASTEiJ_P0034234 Acp1 protein_coding protein_coding MGP_CASTEiJ_T0012481.1 MGP_CASTEiJ_G0010644.1 mouse_genomes_project 12 90597298 90598771 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034640.1 MGP_CASTEiJ_G0019102.1 mouse_genomes_project 12 64518722 64552745 + Abhd12b protein_coding retained_intron MGP_CASTEiJ_T0034641.1 MGP_CASTEiJ_G0019102.1 mouse_genomes_project 12 64518737 64553078 + MGP_CASTEiJ_P0034641 Abhd12b protein_coding protein_coding MGP_CASTEiJ_T0034642.1 MGP_CASTEiJ_G0019102.1 mouse_genomes_project 12 64518737 64553078 + MGP_CASTEiJ_P0034642 Abhd12b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034643.1 MGP_CASTEiJ_G0019102.1 mouse_genomes_project 12 64518737 64553078 + MGP_CASTEiJ_P0034643 Abhd12b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034644.1 MGP_CASTEiJ_G0019102.1 mouse_genomes_project 12 64518737 64553078 + MGP_CASTEiJ_P0034644 Abhd12b protein_coding protein_coding MGP_CASTEiJ_T0034645.1 MGP_CASTEiJ_G0019102.1 mouse_genomes_project 12 64551445 64552745 + Abhd12b protein_coding retained_intron MGP_CASTEiJ_T0000823.1 MGP_CASTEiJ_G0000763.1 mouse_genomes_project 12 77965595 77966907 - TEC TEC MGP_CASTEiJ_T0000831.1 MGP_CASTEiJ_G0000771.1 mouse_genomes_project 12 106131551 106142116 + TEC TEC MGP_CASTEiJ_T0035466.1 MGP_CASTEiJ_G0019354.1 mouse_genomes_project 12 100038275 100043570 - MGP_CASTEiJ_P0035466 protein_coding protein_coding MGP_CASTEiJ_T0012472.1 MGP_CASTEiJ_G0010635.1 mouse_genomes_project 12 77531473 77531716 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034188.1 MGP_CASTEiJ_G0018938.1 mouse_genomes_project 12 17779727 17781959 - MGP_CASTEiJ_P0034188 Id2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0016570.1 MGP_CASTEiJ_G0014551.1 mouse_genomes_project 12 97647267 97649355 + Gm20036 processed_transcript processed_transcript MGP_CASTEiJ_T0000250.1 MGP_CASTEiJ_G0000199.1 mouse_genomes_project 12 111562276 111562710 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0003300.1 MGP_CASTEiJ_G0003040.1 mouse_genomes_project 12 78676665 78679831 - antisense antisense MGP_CASTEiJ_T0100502.1 MGP_CASTEiJ_G0037415.1 mouse_genomes_project 12 39497664 39497871 + Gm24948 snoRNA snoRNA MGP_CASTEiJ_T0035492.1 MGP_CASTEiJ_G0019372.1 mouse_genomes_project 12 101275224 101277698 + MGP_CASTEiJ_P0035492 Tcl1b4 protein_coding protein_coding MGP_CASTEiJ_T0034795.1 MGP_CASTEiJ_G0019153.1 mouse_genomes_project 12 71125791 71156446 + MGP_CASTEiJ_P0034795 Ppp1r36 protein_coding protein_coding MGP_CASTEiJ_T0009650.1 MGP_CASTEiJ_G0007838.1 mouse_genomes_project 12 109670592 109670692 - Gm44471 miRNA miRNA MGP_CASTEiJ_T0099317.1 MGP_CASTEiJ_G0036230.1 mouse_genomes_project 12 71132724 71132798 - Gm25563 snRNA snRNA MGP_CASTEiJ_T0035735.1 MGP_CASTEiJ_G0019450.1 mouse_genomes_project 12 109578870 109581319 + MGP_CASTEiJ_P0035735 Btbd6 protein_coding protein_coding MGP_CASTEiJ_T0035736.1 MGP_CASTEiJ_G0019450.1 mouse_genomes_project 12 109578951 109581319 + MGP_CASTEiJ_P0035736 Btbd6 protein_coding protein_coding MGP_CASTEiJ_T0035737.1 MGP_CASTEiJ_G0019450.1 mouse_genomes_project 12 109579113 109581333 + MGP_CASTEiJ_P0035737 Btbd6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0000236.1 MGP_CASTEiJ_G0000185.1 mouse_genomes_project 12 111128677 111129138 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0034822.1 MGP_CASTEiJ_G0019162.1 mouse_genomes_project 12 71985676 72233054 + MGP_CASTEiJ_P0034822 Fut8 protein_coding protein_coding MGP_CASTEiJ_T0034823.1 MGP_CASTEiJ_G0019162.1 mouse_genomes_project 12 71985676 72233054 + MGP_CASTEiJ_P0034823 Fut8 protein_coding protein_coding MGP_CASTEiJ_T0034824.1 MGP_CASTEiJ_G0019162.1 mouse_genomes_project 12 71986637 72233396 + MGP_CASTEiJ_P0034824 Fut8 protein_coding protein_coding MGP_CASTEiJ_T0000038.1 MGP_CASTEiJ_G0000032.1 mouse_genomes_project 12 110107434 110107482 - MGP_CASTEiJ_P0000038 Ighj2 IG_J_gene IG_J_gene MGP_CASTEiJ_T0000039.1 MGP_CASTEiJ_G0000032.1 mouse_genomes_project 12 110107480 110107534 - Ighj2 IG_J_gene processed_transcript MGP_CASTEiJ_T0034079.1 MGP_CASTEiJ_G0018904.1 mouse_genomes_project 12 8507139 8628524 - MGP_CASTEiJ_P0034079 Vsnl1 protein_coding protein_coding MGP_CASTEiJ_T0099324.1 MGP_CASTEiJ_G0036237.1 mouse_genomes_project 12 81948216 81948323 + Gm22004 snRNA snRNA MGP_CASTEiJ_T0006297.1 MGP_CASTEiJ_G0005259.1 mouse_genomes_project 12 103394640 103397505 + Gm16085 lincRNA lincRNA MGP_CASTEiJ_T0035122.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81056142 81092633 + MGP_CASTEiJ_P0035122 Ttll5 protein_coding protein_coding MGP_CASTEiJ_T0035123.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81056156 81129160 + MGP_CASTEiJ_P0035123 Ttll5 protein_coding protein_coding MGP_CASTEiJ_T0035124.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81056190 81118839 + MGP_CASTEiJ_P0035124 Ttll5 protein_coding protein_coding MGP_CASTEiJ_T0035125.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81056193 81292778 + MGP_CASTEiJ_P0035125 Ttll5 protein_coding protein_coding MGP_CASTEiJ_T0035126.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81056451 81253860 + MGP_CASTEiJ_P0035126 Ttll5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035127.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81056452 81292226 + MGP_CASTEiJ_P0035127 Ttll5 protein_coding protein_coding MGP_CASTEiJ_T0035128.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81056461 81104587 + Ttll5 protein_coding processed_transcript MGP_CASTEiJ_T0035129.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81056461 81292777 + MGP_CASTEiJ_P0035129 Ttll5 protein_coding protein_coding MGP_CASTEiJ_T0035130.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81056468 81074468 + MGP_CASTEiJ_P0035130 Ttll5 protein_coding protein_coding MGP_CASTEiJ_T0035131.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81056504 81076369 + Ttll5 protein_coding retained_intron MGP_CASTEiJ_T0035132.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81056504 81083212 + MGP_CASTEiJ_P0035132 Ttll5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035133.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81056558 81292777 + MGP_CASTEiJ_P0035133 Ttll5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035134.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81057966 81292227 + MGP_CASTEiJ_P0035134 Ttll5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035135.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81113565 81126617 + Ttll5 protein_coding retained_intron MGP_CASTEiJ_T0035136.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81146938 81165361 + MGP_CASTEiJ_P0035136 Ttll5 protein_coding protein_coding MGP_CASTEiJ_T0035137.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81152173 81292777 + MGP_CASTEiJ_P0035137 Ttll5 protein_coding protein_coding MGP_CASTEiJ_T0035138.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81158424 81250605 + MGP_CASTEiJ_P0035138 Ttll5 protein_coding protein_coding MGP_CASTEiJ_T0035139.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81168212 81292777 + MGP_CASTEiJ_P0035139 Ttll5 protein_coding protein_coding MGP_CASTEiJ_T0035140.1 MGP_CASTEiJ_G0019259.1 mouse_genomes_project 12 81174686 81302050 + MGP_CASTEiJ_P0035140 Ttll5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035317.1 MGP_CASTEiJ_G0019306.1 mouse_genomes_project 12 96144737 96155103 + MGP_CASTEiJ_P0035317 Calm1 protein_coding protein_coding MGP_CASTEiJ_T0035318.1 MGP_CASTEiJ_G0019306.1 mouse_genomes_project 12 96144831 96149233 + Calm1 protein_coding retained_intron MGP_CASTEiJ_T0035319.1 MGP_CASTEiJ_G0019306.1 mouse_genomes_project 12 96144834 96152615 + MGP_CASTEiJ_P0035319 Calm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035320.1 MGP_CASTEiJ_G0019306.1 mouse_genomes_project 12 96145446 96155103 + MGP_CASTEiJ_P0035320 Calm1 protein_coding protein_coding MGP_CASTEiJ_T0035321.1 MGP_CASTEiJ_G0019306.1 mouse_genomes_project 12 96150697 96151790 + Calm1 protein_coding retained_intron MGP_CASTEiJ_T0033923.1 MGP_CASTEiJ_G0018860.1 mouse_genomes_project 12 252569 336002 + MGP_CASTEiJ_P0033923 Asxl2 protein_coding protein_coding MGP_CASTEiJ_T0033924.1 MGP_CASTEiJ_G0018860.1 mouse_genomes_project 12 252569 335502 + MGP_CASTEiJ_P0033924 Asxl2 protein_coding protein_coding MGP_CASTEiJ_T0033925.1 MGP_CASTEiJ_G0018860.1 mouse_genomes_project 12 252596 325418 + MGP_CASTEiJ_P0033925 Asxl2 protein_coding protein_coding MGP_CASTEiJ_T0033926.1 MGP_CASTEiJ_G0018860.1 mouse_genomes_project 12 252613 331589 + MGP_CASTEiJ_P0033926 Asxl2 protein_coding protein_coding MGP_CASTEiJ_T0033927.1 MGP_CASTEiJ_G0018860.1 mouse_genomes_project 12 252624 282835 + Asxl2 protein_coding retained_intron MGP_CASTEiJ_T0033928.1 MGP_CASTEiJ_G0018860.1 mouse_genomes_project 12 269364 325543 + MGP_CASTEiJ_P0033928 Asxl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033929.1 MGP_CASTEiJ_G0018860.1 mouse_genomes_project 12 278662 335934 + MGP_CASTEiJ_P0033929 Asxl2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0033930.1 MGP_CASTEiJ_G0018860.1 mouse_genomes_project 12 322798 333884 + Asxl2 protein_coding processed_transcript MGP_CASTEiJ_T0000833.1 MGP_CASTEiJ_G0000773.1 mouse_genomes_project 12 109267077 109269659 - TEC TEC MGP_CASTEiJ_T0009596.1 MGP_CASTEiJ_G0007784.1 mouse_genomes_project 12 106073326 106073405 + Mir370 miRNA miRNA MGP_CASTEiJ_T0035776.1 MGP_CASTEiJ_G0019461.1 mouse_genomes_project 12 112140976 112153828 + MGP_CASTEiJ_P0035776 Zfp386 protein_coding protein_coding MGP_CASTEiJ_T0035777.1 MGP_CASTEiJ_G0019461.1 mouse_genomes_project 12 112141016 112148325 + Zfp386 protein_coding retained_intron MGP_CASTEiJ_T0035778.1 MGP_CASTEiJ_G0019461.1 mouse_genomes_project 12 112141028 112156606 + MGP_CASTEiJ_P0035778 Zfp386 protein_coding protein_coding MGP_CASTEiJ_T0035779.1 MGP_CASTEiJ_G0019461.1 mouse_genomes_project 12 112141081 112144865 + Zfp386 protein_coding retained_intron MGP_CASTEiJ_T0034370.1 MGP_CASTEiJ_G0019003.1 mouse_genomes_project 12 33598821 33620961 - MGP_CASTEiJ_P0034370 Ifrd1 protein_coding protein_coding MGP_CASTEiJ_T0034371.1 MGP_CASTEiJ_G0019003.1 mouse_genomes_project 12 33600389 33604300 - MGP_CASTEiJ_P0034371 Ifrd1 protein_coding protein_coding MGP_CASTEiJ_T0034372.1 MGP_CASTEiJ_G0019003.1 mouse_genomes_project 12 33600578 33601901 - Ifrd1 protein_coding retained_intron MGP_CASTEiJ_T0034373.1 MGP_CASTEiJ_G0019003.1 mouse_genomes_project 12 33601178 33620734 - MGP_CASTEiJ_P0034373 Ifrd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034374.1 MGP_CASTEiJ_G0019003.1 mouse_genomes_project 12 33611226 33646820 - MGP_CASTEiJ_P0034374 Ifrd1 protein_coding protein_coding MGP_CASTEiJ_T0034375.1 MGP_CASTEiJ_G0019003.1 mouse_genomes_project 12 33611283 33614749 - MGP_CASTEiJ_P0034375 Ifrd1 protein_coding protein_coding MGP_CASTEiJ_T0034376.1 MGP_CASTEiJ_G0019003.1 mouse_genomes_project 12 33611340 33647226 - MGP_CASTEiJ_P0034376 Ifrd1 protein_coding protein_coding MGP_CASTEiJ_T0034377.1 MGP_CASTEiJ_G0019003.1 mouse_genomes_project 12 33612603 33620957 - Ifrd1 protein_coding retained_intron MGP_CASTEiJ_T0034378.1 MGP_CASTEiJ_G0019003.1 mouse_genomes_project 12 33613439 33647244 - MGP_CASTEiJ_P0034378 Ifrd1 protein_coding protein_coding MGP_CASTEiJ_T0034379.1 MGP_CASTEiJ_G0019003.1 mouse_genomes_project 12 33614393 33620921 - MGP_CASTEiJ_P0034379 Ifrd1 protein_coding protein_coding MGP_CASTEiJ_T0099288.1 MGP_CASTEiJ_G0036201.1 mouse_genomes_project 12 1688470 1688575 + Gm23676 snRNA snRNA MGP_CASTEiJ_T0009646.1 MGP_CASTEiJ_G0007834.1 mouse_genomes_project 12 108674089 108674165 + Mir203 miRNA miRNA MGP_CASTEiJ_T0099291.1 MGP_CASTEiJ_G0036204.1 mouse_genomes_project 12 9893159 9893266 + Gm25538 snRNA snRNA MGP_CASTEiJ_T0035788.1 MGP_CASTEiJ_G0019465.1 mouse_genomes_project 12 112517050 112576068 + MGP_CASTEiJ_P0035788 Ncapg2 protein_coding protein_coding MGP_CASTEiJ_T0034655.1 MGP_CASTEiJ_G0019105.1 mouse_genomes_project 12 64839121 64854306 + MGP_CASTEiJ_P0034655 Tmx1 protein_coding protein_coding MGP_CASTEiJ_T0034656.1 MGP_CASTEiJ_G0019105.1 mouse_genomes_project 12 64842060 64852515 + MGP_CASTEiJ_P0034656 Tmx1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034657.1 MGP_CASTEiJ_G0019105.1 mouse_genomes_project 12 64845870 64846604 + Tmx1 protein_coding retained_intron MGP_CASTEiJ_T0034015.1 MGP_CASTEiJ_G0018881.1 mouse_genomes_project 12 1813666 1847240 - MGP_CASTEiJ_P0034015 Ubxn2a protein_coding protein_coding MGP_CASTEiJ_T0034016.1 MGP_CASTEiJ_G0018881.1 mouse_genomes_project 12 1813979 1846799 - MGP_CASTEiJ_P0034016 Ubxn2a protein_coding protein_coding MGP_CASTEiJ_T0006280.1 MGP_CASTEiJ_G0005246.1 mouse_genomes_project 12 96154283 96155111 - Gm26723 lincRNA lincRNA MGP_CASTEiJ_T0035108.1 MGP_CASTEiJ_G0019254.1 mouse_genomes_project 12 80670270 80673658 + MGP_CASTEiJ_P0035108 Fos protein_coding protein_coding MGP_CASTEiJ_T0035109.1 MGP_CASTEiJ_G0019254.1 mouse_genomes_project 12 80671072 80672570 + Fos protein_coding processed_transcript MGP_CASTEiJ_T0035110.1 MGP_CASTEiJ_G0019254.1 mouse_genomes_project 12 80671072 80672392 + Fos protein_coding processed_transcript MGP_CASTEiJ_T0035111.1 MGP_CASTEiJ_G0019254.1 mouse_genomes_project 12 80671292 80672448 + Fos protein_coding processed_transcript MGP_CASTEiJ_T0034741.1 MGP_CASTEiJ_G0019135.1 mouse_genomes_project 12 68468140 68494644 + MGP_CASTEiJ_P0034741 Hif1a protein_coding protein_coding MGP_CASTEiJ_T0034742.1 MGP_CASTEiJ_G0019135.1 mouse_genomes_project 12 68468218 68507271 + MGP_CASTEiJ_P0034742 Hif1a protein_coding protein_coding MGP_CASTEiJ_T0034743.1 MGP_CASTEiJ_G0019135.1 mouse_genomes_project 12 68468487 68502257 + MGP_CASTEiJ_P0034743 Hif1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0034744.1 MGP_CASTEiJ_G0019135.1 mouse_genomes_project 12 68488163 68490098 + Hif1a protein_coding retained_intron MGP_CASTEiJ_T0034745.1 MGP_CASTEiJ_G0019135.1 mouse_genomes_project 12 68499237 68501449 + Hif1a protein_coding processed_transcript MGP_CASTEiJ_T0100541.1 MGP_CASTEiJ_G0037454.1 mouse_genomes_project 12 106144481 106144550 + AF357428 snoRNA snoRNA MGP_CASTEiJ_T0035335.1 MGP_CASTEiJ_G0019310.1 mouse_genomes_project 12 96842507 96876405 - MGP_CASTEiJ_P0035335 Gpr68 protein_coding protein_coding MGP_CASTEiJ_T0035336.1 MGP_CASTEiJ_G0019310.1 mouse_genomes_project 12 96842510 96876388 - MGP_CASTEiJ_P0035336 Gpr68 protein_coding protein_coding MGP_CASTEiJ_T0035337.1 MGP_CASTEiJ_G0019310.1 mouse_genomes_project 12 96842510 96866153 - MGP_CASTEiJ_P0035337 Gpr68 protein_coding protein_coding MGP_CASTEiJ_T0035338.1 MGP_CASTEiJ_G0019310.1 mouse_genomes_project 12 96845169 96866127 - Gpr68 protein_coding processed_transcript MGP_CASTEiJ_T0035340.1 MGP_CASTEiJ_G0019310.1 mouse_genomes_project 12 96854476 96876405 - Gpr68 protein_coding processed_transcript MGP_CASTEiJ_T0035341.1 MGP_CASTEiJ_G0019310.1 mouse_genomes_project 12 96854664 96866153 - Gpr68 protein_coding processed_transcript MGP_CASTEiJ_T0034968.1 MGP_CASTEiJ_G0019208.1 mouse_genomes_project 12 78734308 78782840 + MGP_CASTEiJ_P0034968 Psen1 protein_coding protein_coding MGP_CASTEiJ_T0034969.1 MGP_CASTEiJ_G0019208.1 mouse_genomes_project 12 78734668 78783926 + MGP_CASTEiJ_P0034969 Psen1 protein_coding protein_coding MGP_CASTEiJ_T0035151.1 MGP_CASTEiJ_G0019264.1 mouse_genomes_project 12 81974943 81988222 + MGP_CASTEiJ_P0035151 Vash1 protein_coding protein_coding MGP_CASTEiJ_T0000138.1 MGP_CASTEiJ_G0000106.1 mouse_genomes_project 12 112070275 112070763 - MGP_CASTEiJ_P0000138 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034794.1 MGP_CASTEiJ_G0019152.1 mouse_genomes_project 12 71108167 71110916 + MGP_CASTEiJ_P0034794 Hspa2 protein_coding protein_coding MGP_CASTEiJ_T0035230.1 MGP_CASTEiJ_G0019286.1 mouse_genomes_project 12 86312379 86326294 - MGP_CASTEiJ_P0035230 Dio2 protein_coding protein_coding MGP_CASTEiJ_T0003302.1 MGP_CASTEiJ_G0003042.1 mouse_genomes_project 12 80263929 80265784 + Prox2os antisense antisense MGP_CASTEiJ_T0000815.1 MGP_CASTEiJ_G0000755.1 mouse_genomes_project 12 8398653 8399394 - TEC TEC MGP_CASTEiJ_T0009558.1 MGP_CASTEiJ_G0007746.1 mouse_genomes_project 12 75287074 75287139 - Mir1843a miRNA miRNA MGP_CASTEiJ_T0034854.1 MGP_CASTEiJ_G0019177.1 mouse_genomes_project 12 74119696 74344661 + MGP_CASTEiJ_P0034854 Rad51b protein_coding protein_coding MGP_CASTEiJ_T0034855.1 MGP_CASTEiJ_G0019177.1 mouse_genomes_project 12 74119696 74153423 + MGP_CASTEiJ_P0034855 Rad51b protein_coding protein_coding MGP_CASTEiJ_T0035452.1 MGP_CASTEiJ_G0019347.1 mouse_genomes_project 12 99833406 99844503 - MGP_CASTEiJ_P0035452 Serpina11 protein_coding protein_coding MGP_CASTEiJ_T0035453.1 MGP_CASTEiJ_G0019347.1 mouse_genomes_project 12 99833418 99844473 - MGP_CASTEiJ_P0035453 Serpina11 protein_coding protein_coding MGP_CASTEiJ_T0035454.1 MGP_CASTEiJ_G0019347.1 mouse_genomes_project 12 99837844 99844465 - MGP_CASTEiJ_P0035454 Serpina11 protein_coding protein_coding MGP_CASTEiJ_T0035455.1 MGP_CASTEiJ_G0019347.1 mouse_genomes_project 12 99837930 99844463 - MGP_CASTEiJ_P0035455 Serpina11 protein_coding protein_coding MGP_CASTEiJ_T0035456.1 MGP_CASTEiJ_G0019347.1 mouse_genomes_project 12 99839071 99844487 - Serpina11 protein_coding processed_transcript MGP_CASTEiJ_T0009540.1 MGP_CASTEiJ_G0007728.1 mouse_genomes_project 12 28443835 28443944 + Gm44396 miRNA miRNA MGP_CASTEiJ_T0006248.1 MGP_CASTEiJ_G0005219.1 mouse_genomes_project 12 42952367 42970363 + 3110039M20Rik lincRNA lincRNA MGP_CASTEiJ_T0006249.1 MGP_CASTEiJ_G0005219.1 mouse_genomes_project 12 42953375 42970142 + 3110039M20Rik lincRNA lincRNA MGP_CASTEiJ_T0035352.1 MGP_CASTEiJ_G0019316.1 mouse_genomes_project 12 97566218 97647295 - MGP_CASTEiJ_P0035352 Trip11 protein_coding protein_coding MGP_CASTEiJ_T0035353.1 MGP_CASTEiJ_G0019316.1 mouse_genomes_project 12 97569728 97624300 - MGP_CASTEiJ_P0035353 Trip11 protein_coding protein_coding MGP_CASTEiJ_T0035354.1 MGP_CASTEiJ_G0019316.1 mouse_genomes_project 12 97603522 97613704 - MGP_CASTEiJ_P0035354 Trip11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035355.1 MGP_CASTEiJ_G0019316.1 mouse_genomes_project 12 97616316 97647151 - MGP_CASTEiJ_P0035355 Trip11 protein_coding protein_coding MGP_CASTEiJ_T0035356.1 MGP_CASTEiJ_G0019316.1 mouse_genomes_project 12 97619650 97647168 - MGP_CASTEiJ_P0035356 Trip11 protein_coding protein_coding MGP_CASTEiJ_T0035357.1 MGP_CASTEiJ_G0019316.1 mouse_genomes_project 12 97646303 97647183 - Trip11 protein_coding processed_transcript MGP_CASTEiJ_T0009633.1 MGP_CASTEiJ_G0007821.1 mouse_genomes_project 12 106205306 106205385 + Mir496a miRNA miRNA MGP_CASTEiJ_T0035618.1 MGP_CASTEiJ_G0019407.1 mouse_genomes_project 12 107339313 107361396 - MGP_CASTEiJ_P0035618 Cinp protein_coding protein_coding MGP_CASTEiJ_T0035619.1 MGP_CASTEiJ_G0019407.1 mouse_genomes_project 12 107341276 107361588 - MGP_CASTEiJ_P0035619 Cinp protein_coding unknown_likely_coding MGP_CASTEiJ_T0035389.1 MGP_CASTEiJ_G0019325.1 mouse_genomes_project 12 98516452 98556505 - MGP_CASTEiJ_P0035389 Gm28051 protein_coding protein_coding MGP_CASTEiJ_T0034751.1 MGP_CASTEiJ_G0019139.1 mouse_genomes_project 12 69502152 69793817 - MGP_CASTEiJ_P0034751 Kcnh5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034752.1 MGP_CASTEiJ_G0019139.1 mouse_genomes_project 12 69509346 69794412 - MGP_CASTEiJ_P0034752 Kcnh5 protein_coding protein_coding MGP_CASTEiJ_T0009636.1 MGP_CASTEiJ_G0007824.1 mouse_genomes_project 12 106209350 106209430 - Gm24321 miRNA miRNA MGP_CASTEiJ_T0099326.1 MGP_CASTEiJ_G0036239.1 mouse_genomes_project 12 91087481 91087588 - Gm26055 snRNA snRNA MGP_CASTEiJ_T0034003.1 MGP_CASTEiJ_G0018877.1 mouse_genomes_project 12 1745752 1760253 + MGP_CASTEiJ_P0034003 Sf3b6 protein_coding protein_coding MGP_CASTEiJ_T0034122.1 MGP_CASTEiJ_G0018919.1 mouse_genomes_project 12 14543212 14548000 - MGP_CASTEiJ_P0034122 Kcnf1 protein_coding protein_coding MGP_CASTEiJ_T0035780.1 MGP_CASTEiJ_G0019462.1 mouse_genomes_project 12 112171458 112235393 + Vipr2 protein_coding retained_intron MGP_CASTEiJ_T0035781.1 MGP_CASTEiJ_G0019462.1 mouse_genomes_project 12 112171460 112241709 + MGP_CASTEiJ_P0035781 Vipr2 protein_coding protein_coding MGP_CASTEiJ_T0035782.1 MGP_CASTEiJ_G0019462.1 mouse_genomes_project 12 112171492 112192072 + Vipr2 protein_coding processed_transcript MGP_CASTEiJ_T0035783.1 MGP_CASTEiJ_G0019462.1 mouse_genomes_project 12 112171498 112188456 + Vipr2 protein_coding processed_transcript MGP_CASTEiJ_T0035784.1 MGP_CASTEiJ_G0019462.1 mouse_genomes_project 12 112171505 112228748 + Vipr2 protein_coding processed_transcript MGP_CASTEiJ_T0035785.1 MGP_CASTEiJ_G0019462.1 mouse_genomes_project 12 112232767 112239204 + MGP_CASTEiJ_P0035785 Vipr2 protein_coding protein_coding MGP_CASTEiJ_T0035669.1 MGP_CASTEiJ_G0019425.1 mouse_genomes_project 12 108273076 108334604 + MGP_CASTEiJ_P0035669 Klc1 protein_coding protein_coding MGP_CASTEiJ_T0035670.1 MGP_CASTEiJ_G0019425.1 mouse_genomes_project 12 108273183 108322888 + MGP_CASTEiJ_P0035670 Klc1 protein_coding protein_coding MGP_CASTEiJ_T0035671.1 MGP_CASTEiJ_G0019425.1 mouse_genomes_project 12 108273240 108334556 + MGP_CASTEiJ_P0035671 Klc1 protein_coding protein_coding MGP_CASTEiJ_T0035672.1 MGP_CASTEiJ_G0019425.1 mouse_genomes_project 12 108294167 108322886 + MGP_CASTEiJ_P0035672 Klc1 protein_coding protein_coding MGP_CASTEiJ_T0035673.1 MGP_CASTEiJ_G0019425.1 mouse_genomes_project 12 108303788 108335669 + MGP_CASTEiJ_P0035673 Klc1 protein_coding protein_coding MGP_CASTEiJ_T0035674.1 MGP_CASTEiJ_G0019425.1 mouse_genomes_project 12 108309453 108314648 + Klc1 protein_coding retained_intron MGP_CASTEiJ_T0035675.1 MGP_CASTEiJ_G0019425.1 mouse_genomes_project 12 108316182 108322389 + Klc1 protein_coding processed_transcript MGP_CASTEiJ_T0035676.1 MGP_CASTEiJ_G0019425.1 mouse_genomes_project 12 108323342 108334555 + Klc1 protein_coding retained_intron MGP_CASTEiJ_T0035682.1 MGP_CASTEiJ_G0019425.1 mouse_genomes_project 12 108333332 108334540 + Klc1 protein_coding retained_intron MGP_CASTEiJ_T0035545.1 MGP_CASTEiJ_G0019387.1 mouse_genomes_project 12 104686259 104713607 + MGP_CASTEiJ_P0035545 Hhipl1 protein_coding protein_coding MGP_CASTEiJ_T0009533.1 MGP_CASTEiJ_G0007721.1 mouse_genomes_project 12 13107678 13107786 - Mir6387 miRNA miRNA MGP_CASTEiJ_T0009549.1 MGP_CASTEiJ_G0007737.1 mouse_genomes_project 12 63468003 63468082 + miRNA miRNA MGP_CASTEiJ_T0100500.1 MGP_CASTEiJ_G0037413.1 mouse_genomes_project 12 37239322 37239451 + Gm26326 snoRNA snoRNA MGP_CASTEiJ_T0034974.1 MGP_CASTEiJ_G0019210.1 mouse_genomes_project 12 78846616 78986760 - MGP_CASTEiJ_P0034974 Numb protein_coding protein_coding MGP_CASTEiJ_T0034975.1 MGP_CASTEiJ_G0019210.1 mouse_genomes_project 12 78846618 78936336 - MGP_CASTEiJ_P0034975 Numb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034976.1 MGP_CASTEiJ_G0019210.1 mouse_genomes_project 12 78846653 78986670 - MGP_CASTEiJ_P0034976 Numb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034977.1 MGP_CASTEiJ_G0019210.1 mouse_genomes_project 12 78848018 78897827 - MGP_CASTEiJ_P0034977 Numb protein_coding protein_coding MGP_CASTEiJ_T0034978.1 MGP_CASTEiJ_G0019210.1 mouse_genomes_project 12 78848018 78897827 - MGP_CASTEiJ_P0034978 Numb protein_coding protein_coding MGP_CASTEiJ_T0034979.1 MGP_CASTEiJ_G0019210.1 mouse_genomes_project 12 78848018 78897827 - MGP_CASTEiJ_P0034979 Numb protein_coding protein_coding MGP_CASTEiJ_T0034980.1 MGP_CASTEiJ_G0019210.1 mouse_genomes_project 12 78857746 78986693 - MGP_CASTEiJ_P0034980 Numb protein_coding protein_coding MGP_CASTEiJ_T0034981.1 MGP_CASTEiJ_G0019210.1 mouse_genomes_project 12 78861845 78986682 - MGP_CASTEiJ_P0034981 Numb protein_coding protein_coding MGP_CASTEiJ_T0034982.1 MGP_CASTEiJ_G0019210.1 mouse_genomes_project 12 78861916 78986709 - MGP_CASTEiJ_P0034982 Numb protein_coding protein_coding MGP_CASTEiJ_T0034983.1 MGP_CASTEiJ_G0019210.1 mouse_genomes_project 12 78864632 78986716 - MGP_CASTEiJ_P0034983 Numb protein_coding protein_coding MGP_CASTEiJ_T0034984.1 MGP_CASTEiJ_G0019210.1 mouse_genomes_project 12 78887097 78936324 - Numb protein_coding retained_intron MGP_CASTEiJ_T0000227.1 MGP_CASTEiJ_G0000176.1 mouse_genomes_project 12 110604104 110604484 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0098484.1 MGP_CASTEiJ_G0035415.1 mouse_genomes_project 12 77133828 77133924 + n-R5s62 rRNA rRNA MGP_CASTEiJ_T0000228.1 MGP_CASTEiJ_G0000177.1 mouse_genomes_project 12 110612725 110613031 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0034527.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 52953939 53053992 + MGP_CASTEiJ_P0034527 Ctage5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034528.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 52984718 53053987 + MGP_CASTEiJ_P0034528 Ctage5 protein_coding protein_coding MGP_CASTEiJ_T0034529.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 52984744 53053984 + MGP_CASTEiJ_P0034529 Ctage5 protein_coding protein_coding MGP_CASTEiJ_T0034530.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 52984761 53053987 + MGP_CASTEiJ_P0034530 Ctage5 protein_coding protein_coding MGP_CASTEiJ_T0034531.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 52984763 53006713 + MGP_CASTEiJ_P0034531 Ctage5 protein_coding protein_coding MGP_CASTEiJ_T0034532.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 52984783 53054033 + MGP_CASTEiJ_P0034532 Ctage5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034533.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 52984808 53029624 + MGP_CASTEiJ_P0034533 Ctage5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034534.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 52985365 53053761 + MGP_CASTEiJ_P0034534 Ctage5 protein_coding protein_coding MGP_CASTEiJ_T0034535.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 52985821 53054033 + MGP_CASTEiJ_P0034535 Ctage5 protein_coding protein_coding MGP_CASTEiJ_T0034536.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 52986006 53003971 + MGP_CASTEiJ_P0034536 Ctage5 protein_coding protein_coding MGP_CASTEiJ_T0034537.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 52986270 53055166 + MGP_CASTEiJ_P0034537 Ctage5 protein_coding protein_coding MGP_CASTEiJ_T0034538.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 52986437 53053984 + MGP_CASTEiJ_P0034538 Ctage5 protein_coding protein_coding MGP_CASTEiJ_T0034539.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 52986451 53053763 + MGP_CASTEiJ_P0034539 Ctage5 protein_coding protein_coding MGP_CASTEiJ_T0034540.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 52986465 53002067 + Ctage5 protein_coding retained_intron MGP_CASTEiJ_T0034541.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 52986486 53054033 + MGP_CASTEiJ_P0034541 Ctage5 protein_coding protein_coding MGP_CASTEiJ_T0034542.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 52991109 53053763 + MGP_CASTEiJ_P0034542 Ctage5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034543.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 53006685 53053763 + MGP_CASTEiJ_P0034543 Ctage5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034544.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 53023523 53048020 + MGP_CASTEiJ_P0034544 Ctage5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034545.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 53027440 53036188 + Ctage5 protein_coding retained_intron MGP_CASTEiJ_T0034546.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 53029536 53053451 + Ctage5 protein_coding retained_intron MGP_CASTEiJ_T0034547.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 53029666 53031751 + Ctage5 protein_coding retained_intron MGP_CASTEiJ_T0034548.1 MGP_CASTEiJ_G0019066.1 mouse_genomes_project 12 53040503 53052316 + Ctage5 protein_coding retained_intron MGP_CASTEiJ_T0009580.1 MGP_CASTEiJ_G0007768.1 mouse_genomes_project 12 106038857 106038954 + Mir337 miRNA miRNA MGP_CASTEiJ_T0009553.1 MGP_CASTEiJ_G0007741.1 mouse_genomes_project 12 66572531 66572640 - Gm24466 miRNA miRNA MGP_CASTEiJ_T0034650.1 MGP_CASTEiJ_G0019104.1 mouse_genomes_project 12 64609804 64729177 - MGP_CASTEiJ_P0034650 Trim9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034651.1 MGP_CASTEiJ_G0019104.1 mouse_genomes_project 12 64622299 64632918 - MGP_CASTEiJ_P0034651 Trim9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034652.1 MGP_CASTEiJ_G0019104.1 mouse_genomes_project 12 64622305 64729782 - MGP_CASTEiJ_P0034652 Trim9 protein_coding protein_coding MGP_CASTEiJ_T0034653.1 MGP_CASTEiJ_G0019104.1 mouse_genomes_project 12 64622305 64729782 - MGP_CASTEiJ_P0034653 Trim9 protein_coding protein_coding MGP_CASTEiJ_T0034654.1 MGP_CASTEiJ_G0019104.1 mouse_genomes_project 12 64641479 64729782 - MGP_CASTEiJ_P0034654 Trim9 protein_coding protein_coding MGP_CASTEiJ_T0035729.1 MGP_CASTEiJ_G0019445.1 mouse_genomes_project 12 109399237 109410390 - MGP_CASTEiJ_P0035729 Cdca4 protein_coding protein_coding MGP_CASTEiJ_T0012495.1 MGP_CASTEiJ_G0010658.1 mouse_genomes_project 12 104833928 104834686 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034267.1 MGP_CASTEiJ_G0018968.1 mouse_genomes_project 12 24566838 24862540 + MGP_CASTEiJ_P0034267 Cog5 protein_coding protein_coding MGP_CASTEiJ_T0034271.1 MGP_CASTEiJ_G0018968.1 mouse_genomes_project 12 24675745 24850689 + MGP_CASTEiJ_P0034271 Cog5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035622.1 MGP_CASTEiJ_G0019409.1 mouse_genomes_project 12 107455580 107459268 - MGP_CASTEiJ_P0035622 Ankrd9 protein_coding protein_coding MGP_CASTEiJ_T0035623.1 MGP_CASTEiJ_G0019409.1 mouse_genomes_project 12 107456653 107458483 - MGP_CASTEiJ_P0035623 Ankrd9 protein_coding protein_coding MGP_CASTEiJ_T0035624.1 MGP_CASTEiJ_G0019409.1 mouse_genomes_project 12 107456654 107459171 - MGP_CASTEiJ_P0035624 Ankrd9 protein_coding protein_coding MGP_CASTEiJ_T0035625.1 MGP_CASTEiJ_G0019409.1 mouse_genomes_project 12 107456654 107459249 - MGP_CASTEiJ_P0035625 Ankrd9 protein_coding protein_coding MGP_CASTEiJ_T0035626.1 MGP_CASTEiJ_G0019409.1 mouse_genomes_project 12 107456654 107458846 - MGP_CASTEiJ_P0035626 Ankrd9 protein_coding protein_coding MGP_CASTEiJ_T0035627.1 MGP_CASTEiJ_G0019409.1 mouse_genomes_project 12 107456656 107459223 - MGP_CASTEiJ_P0035627 Ankrd9 protein_coding protein_coding MGP_CASTEiJ_T0035628.1 MGP_CASTEiJ_G0019409.1 mouse_genomes_project 12 107458199 107458807 - Ankrd9 protein_coding processed_transcript MGP_CASTEiJ_T0035578.1 MGP_CASTEiJ_G0019398.1 mouse_genomes_project 12 105894735 105895694 + Dlk1 protein_coding retained_intron MGP_CASTEiJ_T0035579.1 MGP_CASTEiJ_G0019398.1 mouse_genomes_project 12 105894761 105906575 + MGP_CASTEiJ_P0035579 Dlk1 protein_coding protein_coding MGP_CASTEiJ_T0035580.1 MGP_CASTEiJ_G0019398.1 mouse_genomes_project 12 105895366 105902671 + MGP_CASTEiJ_P0035580 Dlk1 protein_coding protein_coding MGP_CASTEiJ_T0035581.1 MGP_CASTEiJ_G0019398.1 mouse_genomes_project 12 105895402 105902352 + MGP_CASTEiJ_P0035581 Dlk1 protein_coding protein_coding MGP_CASTEiJ_T0035582.1 MGP_CASTEiJ_G0019398.1 mouse_genomes_project 12 105895402 105902589 + MGP_CASTEiJ_P0035582 Dlk1 protein_coding protein_coding MGP_CASTEiJ_T0035583.1 MGP_CASTEiJ_G0019398.1 mouse_genomes_project 12 105895446 105906575 + MGP_CASTEiJ_P0035583 Dlk1 protein_coding protein_coding MGP_CASTEiJ_T0035584.1 MGP_CASTEiJ_G0019398.1 mouse_genomes_project 12 105895512 105902445 + MGP_CASTEiJ_P0035584 Dlk1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035585.1 MGP_CASTEiJ_G0019398.1 mouse_genomes_project 12 105895566 105906575 + MGP_CASTEiJ_P0035585 Dlk1 protein_coding protein_coding MGP_CASTEiJ_T0035586.1 MGP_CASTEiJ_G0019398.1 mouse_genomes_project 12 105895571 105902331 + MGP_CASTEiJ_P0035586 Dlk1 protein_coding protein_coding MGP_CASTEiJ_T0035587.1 MGP_CASTEiJ_G0019398.1 mouse_genomes_project 12 105896106 105901733 + MGP_CASTEiJ_P0035587 Dlk1 protein_coding protein_coding MGP_CASTEiJ_T0035588.1 MGP_CASTEiJ_G0019398.1 mouse_genomes_project 12 105901813 105902446 + MGP_CASTEiJ_P0035588 Dlk1 protein_coding protein_coding MGP_CASTEiJ_T0006267.1 MGP_CASTEiJ_G0005233.1 mouse_genomes_project 12 75809072 75812106 - Gm26545 lincRNA lincRNA MGP_CASTEiJ_T0034339.1 MGP_CASTEiJ_G0018993.1 mouse_genomes_project 12 29493343 29497626 + MGP_CASTEiJ_P0034339 Sostdc1 protein_coding protein_coding MGP_CASTEiJ_T0034058.1 MGP_CASTEiJ_G0018894.1 mouse_genomes_project 12 6100565 6156155 + MGP_CASTEiJ_P0034058 Wdr35 protein_coding protein_coding MGP_CASTEiJ_T0034059.1 MGP_CASTEiJ_G0018894.1 mouse_genomes_project 12 6100684 6118401 + Wdr35 protein_coding retained_intron MGP_CASTEiJ_T0034060.1 MGP_CASTEiJ_G0018894.1 mouse_genomes_project 12 6100684 6118401 + MGP_CASTEiJ_P0034060 Wdr35 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034061.1 MGP_CASTEiJ_G0018894.1 mouse_genomes_project 12 6100720 6156154 + MGP_CASTEiJ_P0034061 Wdr35 protein_coding protein_coding MGP_CASTEiJ_T0034062.1 MGP_CASTEiJ_G0018894.1 mouse_genomes_project 12 6100732 6150315 + Wdr35 protein_coding retained_intron MGP_CASTEiJ_T0034063.1 MGP_CASTEiJ_G0018894.1 mouse_genomes_project 12 6101542 6112639 + Wdr35 protein_coding retained_intron MGP_CASTEiJ_T0034064.1 MGP_CASTEiJ_G0018894.1 mouse_genomes_project 12 6149921 6151787 + Wdr35 protein_coding retained_intron MGP_CASTEiJ_T0034667.1 MGP_CASTEiJ_G0019109.1 mouse_genomes_project 12 65416340 65491307 + MGP_CASTEiJ_P0034667 Arid4a protein_coding protein_coding MGP_CASTEiJ_T0034668.1 MGP_CASTEiJ_G0019109.1 mouse_genomes_project 12 65416379 65471920 + Arid4a protein_coding processed_transcript MGP_CASTEiJ_T0034669.1 MGP_CASTEiJ_G0019109.1 mouse_genomes_project 12 65417058 65449546 + MGP_CASTEiJ_P0034669 Arid4a protein_coding protein_coding MGP_CASTEiJ_T0034670.1 MGP_CASTEiJ_G0019109.1 mouse_genomes_project 12 65450546 65479820 + MGP_CASTEiJ_P0034670 Arid4a protein_coding protein_coding MGP_CASTEiJ_T0034526.1 MGP_CASTEiJ_G0019065.1 mouse_genomes_project 12 52953938 52967735 + MGP_CASTEiJ_P0034526 Mia2 protein_coding protein_coding MGP_CASTEiJ_T0016560.1 MGP_CASTEiJ_G0014544.1 mouse_genomes_project 12 65712529 65719450 - processed_transcript processed_transcript MGP_CASTEiJ_T0000091.1 MGP_CASTEiJ_G0000071.1 mouse_genomes_project 12 111093529 111093840 - MGP_CASTEiJ_P0000091 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000093.1 MGP_CASTEiJ_G0000071.1 mouse_genomes_project 12 111093532 111093829 - MGP_CASTEiJ_P0000093 IG_V_gene IG_V_gene MGP_CASTEiJ_T0033974.1 MGP_CASTEiJ_G0018864.1 mouse_genomes_project 12 822931 828599 + MGP_CASTEiJ_P0033974 Pomc protein_coding protein_coding MGP_CASTEiJ_T0102026.1 MGP_CASTEiJ_G0038751.1 mouse_genomes_project 12 100063123 100081466 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099319.1 MGP_CASTEiJ_G0036232.1 mouse_genomes_project 12 72169274 72169434 + Gm25926 snRNA snRNA MGP_CASTEiJ_T0034994.1 MGP_CASTEiJ_G0019218.1 mouse_genomes_project 12 79153690 79162058 + MGP_CASTEiJ_P0034994 Acot5 protein_coding protein_coding MGP_CASTEiJ_T0034995.1 MGP_CASTEiJ_G0019218.1 mouse_genomes_project 12 79153690 79162068 + MGP_CASTEiJ_P0034995 Acot5 protein_coding protein_coding MGP_CASTEiJ_T0006268.1 MGP_CASTEiJ_G0005234.1 mouse_genomes_project 12 75847059 75848086 - 1700052I22Rik lincRNA lincRNA MGP_CASTEiJ_T0034151.1 MGP_CASTEiJ_G0018928.1 mouse_genomes_project 12 16168966 16222077 - MGP_CASTEiJ_P0034151 Adam17 protein_coding protein_coding MGP_CASTEiJ_T0034152.1 MGP_CASTEiJ_G0018928.1 mouse_genomes_project 12 16168974 16222116 - MGP_CASTEiJ_P0034152 Adam17 protein_coding protein_coding MGP_CASTEiJ_T0034153.1 MGP_CASTEiJ_G0018928.1 mouse_genomes_project 12 16168974 16222077 - MGP_CASTEiJ_P0034153 Adam17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034154.1 MGP_CASTEiJ_G0018928.1 mouse_genomes_project 12 16168974 16222077 - MGP_CASTEiJ_P0034154 Adam17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034155.1 MGP_CASTEiJ_G0018928.1 mouse_genomes_project 12 16170986 16174767 - Adam17 protein_coding processed_transcript MGP_CASTEiJ_T0034156.1 MGP_CASTEiJ_G0018928.1 mouse_genomes_project 12 16173461 16191429 - Adam17 protein_coding retained_intron MGP_CASTEiJ_T0034157.1 MGP_CASTEiJ_G0018928.1 mouse_genomes_project 12 16175549 16177995 - Adam17 protein_coding retained_intron MGP_CASTEiJ_T0034158.1 MGP_CASTEiJ_G0018928.1 mouse_genomes_project 12 16197090 16222018 - MGP_CASTEiJ_P0034158 Adam17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009563.1 MGP_CASTEiJ_G0007751.1 mouse_genomes_project 12 82642075 82642151 + miRNA miRNA MGP_CASTEiJ_T0101520.1 MGP_CASTEiJ_G0038415.1 mouse_genomes_project 12 97131406 97135071 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101521.1 MGP_CASTEiJ_G0038415.1 mouse_genomes_project 12 97134899 97135551 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0034746.1 MGP_CASTEiJ_G0019136.1 mouse_genomes_project 12 68530277 68543934 + MGP_CASTEiJ_P0034746 Snapc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034747.1 MGP_CASTEiJ_G0019136.1 mouse_genomes_project 12 68530310 68552170 + MGP_CASTEiJ_P0034747 Snapc1 protein_coding protein_coding MGP_CASTEiJ_T0011006.1 MGP_CASTEiJ_G0009194.1 mouse_genomes_project 12 98952523 98952685 + Gm27976 misc_RNA misc_RNA MGP_CASTEiJ_T0000215.1 MGP_CASTEiJ_G0000164.1 mouse_genomes_project 12 110294288 110294725 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0000829.1 MGP_CASTEiJ_G0000769.1 mouse_genomes_project 12 98371528 98373568 - TEC TEC MGP_CASTEiJ_T0000009.1 MGP_CASTEiJ_G0000007.1 mouse_genomes_project 12 109974129 109975990 - MGP_CASTEiJ_P0000009 Ighg2b IG_C_gene IG_C_gene MGP_CASTEiJ_T0035770.1 MGP_CASTEiJ_G0019458.1 mouse_genomes_project 12 109808190 109811770 + MGP_CASTEiJ_P0035770 Tmem121 protein_coding protein_coding MGP_CASTEiJ_T0034474.1 MGP_CASTEiJ_G0019044.1 mouse_genomes_project 12 49042732 49084379 + MGP_CASTEiJ_P0034474 Psma6 protein_coding protein_coding MGP_CASTEiJ_T0034475.1 MGP_CASTEiJ_G0019044.1 mouse_genomes_project 12 49062007 49084523 + MGP_CASTEiJ_P0034475 Psma6 protein_coding protein_coding MGP_CASTEiJ_T0034476.1 MGP_CASTEiJ_G0019044.1 mouse_genomes_project 12 49062027 49084510 + MGP_CASTEiJ_P0034476 Psma6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034477.1 MGP_CASTEiJ_G0019044.1 mouse_genomes_project 12 49071621 49078526 + Psma6 protein_coding processed_transcript MGP_CASTEiJ_T0034831.1 MGP_CASTEiJ_G0019168.1 mouse_genomes_project 12 73685041 73709006 - MGP_CASTEiJ_P0034831 Plek2 protein_coding protein_coding MGP_CASTEiJ_T0035287.1 MGP_CASTEiJ_G0019299.1 mouse_genomes_project 12 94774675 94838014 + MGP_CASTEiJ_P0035287 Ttc8 protein_coding protein_coding MGP_CASTEiJ_T0035288.1 MGP_CASTEiJ_G0019299.1 mouse_genomes_project 12 94774713 94838020 + MGP_CASTEiJ_P0035288 Ttc8 protein_coding protein_coding MGP_CASTEiJ_T0035289.1 MGP_CASTEiJ_G0019299.1 mouse_genomes_project 12 94774921 94814703 + MGP_CASTEiJ_P0035289 Ttc8 protein_coding protein_coding MGP_CASTEiJ_T0035290.1 MGP_CASTEiJ_G0019299.1 mouse_genomes_project 12 94795706 94824080 + Ttc8 protein_coding processed_transcript MGP_CASTEiJ_T0035291.1 MGP_CASTEiJ_G0019299.1 mouse_genomes_project 12 94827507 94837343 + Ttc8 protein_coding processed_transcript MGP_CASTEiJ_T0035292.1 MGP_CASTEiJ_G0019299.1 mouse_genomes_project 12 94827536 94833051 + Ttc8 protein_coding processed_transcript MGP_CASTEiJ_T0098481.1 MGP_CASTEiJ_G0035412.1 mouse_genomes_project 12 49779276 49779396 - Gm23799 rRNA rRNA MGP_CASTEiJ_T0000257.1 MGP_CASTEiJ_G0000206.1 mouse_genomes_project 12 112070274 112070708 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0012491.1 MGP_CASTEiJ_G0010654.1 mouse_genomes_project 12 102752947 102754487 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016559.1 MGP_CASTEiJ_G0014543.1 mouse_genomes_project 12 38938489 38943022 + Gm9921 processed_transcript processed_transcript MGP_CASTEiJ_T0000069.1 MGP_CASTEiJ_G0000056.1 mouse_genomes_project 12 110659960 110660472 - MGP_CASTEiJ_P0000069 Ighv5-17 IG_V_gene IG_V_gene MGP_CASTEiJ_T0009557.1 MGP_CASTEiJ_G0007745.1 mouse_genomes_project 12 71856743 71856811 - Gm22696 miRNA miRNA MGP_CASTEiJ_T0035542.1 MGP_CASTEiJ_G0019385.1 mouse_genomes_project 12 104538981 104567137 + MGP_CASTEiJ_P0035542 Ccnk protein_coding unknown_likely_coding MGP_CASTEiJ_T0035543.1 MGP_CASTEiJ_G0019385.1 mouse_genomes_project 12 104539220 104567133 + MGP_CASTEiJ_P0035543 Ccnk protein_coding protein_coding MGP_CASTEiJ_T0035152.1 MGP_CASTEiJ_G0019265.1 mouse_genomes_project 12 81997792 82027098 - MGP_CASTEiJ_P0035152 Angel1 protein_coding protein_coding MGP_CASTEiJ_T0035153.1 MGP_CASTEiJ_G0019265.1 mouse_genomes_project 12 81999468 82003448 - Angel1 protein_coding processed_transcript MGP_CASTEiJ_T0035154.1 MGP_CASTEiJ_G0019265.1 mouse_genomes_project 12 81999586 82017248 - Angel1 protein_coding processed_transcript MGP_CASTEiJ_T0035155.1 MGP_CASTEiJ_G0019265.1 mouse_genomes_project 12 81999628 82003243 - Angel1 protein_coding processed_transcript MGP_CASTEiJ_T0035156.1 MGP_CASTEiJ_G0019265.1 mouse_genomes_project 12 81999712 82018832 - Angel1 protein_coding processed_transcript MGP_CASTEiJ_T0035157.1 MGP_CASTEiJ_G0019265.1 mouse_genomes_project 12 82018991 82022573 - Angel1 protein_coding processed_transcript MGP_CASTEiJ_T0035325.1 MGP_CASTEiJ_G0019308.1 mouse_genomes_project 12 96510450 96689483 - MGP_CASTEiJ_P0035325 Rps6ka5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035326.1 MGP_CASTEiJ_G0019308.1 mouse_genomes_project 12 96511787 96689631 - MGP_CASTEiJ_P0035326 Rps6ka5 protein_coding protein_coding MGP_CASTEiJ_T0035327.1 MGP_CASTEiJ_G0019308.1 mouse_genomes_project 12 96512528 96689574 - MGP_CASTEiJ_P0035327 Rps6ka5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099318.1 MGP_CASTEiJ_G0036231.1 mouse_genomes_project 12 72150027 72150126 + Gm24775 snRNA snRNA MGP_CASTEiJ_T0035293.1 MGP_CASTEiJ_G0019300.1 mouse_genomes_project 12 95064442 95269494 - MGP_CASTEiJ_P0035293 Foxn3 protein_coding protein_coding MGP_CASTEiJ_T0035294.1 MGP_CASTEiJ_G0019300.1 mouse_genomes_project 12 95064556 95268769 - MGP_CASTEiJ_P0035294 Foxn3 protein_coding protein_coding MGP_CASTEiJ_T0035295.1 MGP_CASTEiJ_G0019300.1 mouse_genomes_project 12 95064556 95330594 - MGP_CASTEiJ_P0035295 Foxn3 protein_coding protein_coding MGP_CASTEiJ_T0035296.1 MGP_CASTEiJ_G0019300.1 mouse_genomes_project 12 95066258 95161039 - MGP_CASTEiJ_P0035296 Foxn3 protein_coding protein_coding MGP_CASTEiJ_T0035297.1 MGP_CASTEiJ_G0019300.1 mouse_genomes_project 12 95081119 95161038 - MGP_CASTEiJ_P0035297 Foxn3 protein_coding protein_coding MGP_CASTEiJ_T0035298.1 MGP_CASTEiJ_G0019300.1 mouse_genomes_project 12 95161024 95231248 - Foxn3 protein_coding processed_transcript MGP_CASTEiJ_T0035299.1 MGP_CASTEiJ_G0019300.1 mouse_genomes_project 12 95213313 95292105 - MGP_CASTEiJ_P0035299 Foxn3 protein_coding protein_coding MGP_CASTEiJ_T0035300.1 MGP_CASTEiJ_G0019300.1 mouse_genomes_project 12 95263075 95330617 - Foxn3 protein_coding retained_intron MGP_CASTEiJ_T0035301.1 MGP_CASTEiJ_G0019300.1 mouse_genomes_project 12 95264126 95330631 - MGP_CASTEiJ_P0035301 Foxn3 protein_coding protein_coding MGP_CASTEiJ_T0100543.1 MGP_CASTEiJ_G0037456.1 mouse_genomes_project 12 106146053 106146128 + AF357341 snoRNA snoRNA MGP_CASTEiJ_T0100506.1 MGP_CASTEiJ_G0037419.1 mouse_genomes_project 12 50299932 50300064 + Gm25760 snoRNA snoRNA MGP_CASTEiJ_T0000098.1 MGP_CASTEiJ_G0000077.1 mouse_genomes_project 12 111142225 111142672 - MGP_CASTEiJ_P0000098 IG_V_gene IG_V_gene MGP_CASTEiJ_T0035009.1 MGP_CASTEiJ_G0019223.1 mouse_genomes_project 12 79393987 79430624 + MGP_CASTEiJ_P0035009 Ptgr2 protein_coding protein_coding MGP_CASTEiJ_T0035010.1 MGP_CASTEiJ_G0019223.1 mouse_genomes_project 12 79394121 79415695 + Ptgr2 protein_coding retained_intron MGP_CASTEiJ_T0035011.1 MGP_CASTEiJ_G0019223.1 mouse_genomes_project 12 79394130 79425122 + MGP_CASTEiJ_P0035011 Ptgr2 protein_coding protein_coding MGP_CASTEiJ_T0035012.1 MGP_CASTEiJ_G0019223.1 mouse_genomes_project 12 79394137 79409860 + Ptgr2 protein_coding retained_intron MGP_CASTEiJ_T0035013.1 MGP_CASTEiJ_G0019223.1 mouse_genomes_project 12 79394140 79422079 + Ptgr2 protein_coding processed_transcript MGP_CASTEiJ_T0035014.1 MGP_CASTEiJ_G0019223.1 mouse_genomes_project 12 79394155 79417755 + Ptgr2 protein_coding processed_transcript MGP_CASTEiJ_T0035015.1 MGP_CASTEiJ_G0019223.1 mouse_genomes_project 12 79394156 79428899 + MGP_CASTEiJ_P0035015 Ptgr2 protein_coding protein_coding MGP_CASTEiJ_T0035016.1 MGP_CASTEiJ_G0019223.1 mouse_genomes_project 12 79394162 79429646 + MGP_CASTEiJ_P0035016 Ptgr2 protein_coding protein_coding MGP_CASTEiJ_T0035017.1 MGP_CASTEiJ_G0019223.1 mouse_genomes_project 12 79394169 79428899 + MGP_CASTEiJ_P0035017 Ptgr2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035677.1 MGP_CASTEiJ_G0019426.1 mouse_genomes_project 12 108331054 108340049 - MGP_CASTEiJ_P0035677 Xrcc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035678.1 MGP_CASTEiJ_G0019426.1 mouse_genomes_project 12 108331055 108341667 - MGP_CASTEiJ_P0035678 Xrcc3 protein_coding protein_coding MGP_CASTEiJ_T0035679.1 MGP_CASTEiJ_G0019426.1 mouse_genomes_project 12 108332741 108340049 - Xrcc3 protein_coding processed_transcript MGP_CASTEiJ_T0035680.1 MGP_CASTEiJ_G0019426.1 mouse_genomes_project 12 108332807 108337783 - Xrcc3 protein_coding retained_intron MGP_CASTEiJ_T0035681.1 MGP_CASTEiJ_G0019426.1 mouse_genomes_project 12 108332902 108341699 - Xrcc3 protein_coding processed_transcript MGP_CASTEiJ_T0035683.1 MGP_CASTEiJ_G0019426.1 mouse_genomes_project 12 108337566 108340069 - Xrcc3 protein_coding processed_transcript MGP_CASTEiJ_T0035684.1 MGP_CASTEiJ_G0019426.1 mouse_genomes_project 12 108337701 108341678 - Xrcc3 protein_coding processed_transcript MGP_CASTEiJ_T0035685.1 MGP_CASTEiJ_G0019426.1 mouse_genomes_project 12 108339278 108340069 - Xrcc3 protein_coding processed_transcript MGP_CASTEiJ_T0009597.1 MGP_CASTEiJ_G0007785.1 mouse_genomes_project 12 106146739 106146816 + Mir882 miRNA miRNA MGP_CASTEiJ_T0035704.1 MGP_CASTEiJ_G0019434.1 mouse_genomes_project 12 109057258 109064381 + MGP_CASTEiJ_P0035704 A530016L24Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0035344.1 MGP_CASTEiJ_G0019312.1 mouse_genomes_project 12 97024027 97074463 - MGP_CASTEiJ_P0035344 Smek1 protein_coding protein_coding MGP_CASTEiJ_T0035345.1 MGP_CASTEiJ_G0019312.1 mouse_genomes_project 12 97024027 97074463 - MGP_CASTEiJ_P0035345 Smek1 protein_coding protein_coding MGP_CASTEiJ_T0100514.1 MGP_CASTEiJ_G0037427.1 mouse_genomes_project 12 59732611 59732743 + Gm22782 snoRNA snoRNA MGP_CASTEiJ_T0006295.1 MGP_CASTEiJ_G0005257.1 mouse_genomes_project 12 103208451 103212249 - lincRNA lincRNA MGP_CASTEiJ_T0035617.1 MGP_CASTEiJ_G0019406.1 mouse_genomes_project 12 107315107 107336698 + MGP_CASTEiJ_P0035617 Zfp839 protein_coding protein_coding MGP_CASTEiJ_T0100487.1 MGP_CASTEiJ_G0037400.1 mouse_genomes_project 12 9194234 9194351 + Gm25610 snoRNA snoRNA MGP_CASTEiJ_T0034164.1 MGP_CASTEiJ_G0018932.1 mouse_genomes_project 12 17200979 17248151 + MGP_CASTEiJ_P0034164 Grhl1 protein_coding protein_coding MGP_CASTEiJ_T0034165.1 MGP_CASTEiJ_G0018932.1 mouse_genomes_project 12 17201039 17246862 + MGP_CASTEiJ_P0034165 Grhl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034166.1 MGP_CASTEiJ_G0018932.1 mouse_genomes_project 12 17211547 17248155 + MGP_CASTEiJ_P0034166 Grhl1 protein_coding protein_coding MGP_CASTEiJ_T0100534.1 MGP_CASTEiJ_G0037447.1 mouse_genomes_project 12 106108990 106109063 + DQ267101 snoRNA snoRNA MGP_CASTEiJ_T0034186.1 MGP_CASTEiJ_G0018937.1 mouse_genomes_project 12 17646481 17738312 + MGP_CASTEiJ_P0034186 Kidins220 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034187.1 MGP_CASTEiJ_G0018937.1 mouse_genomes_project 12 17646865 17734843 + MGP_CASTEiJ_P0034187 Kidins220 protein_coding protein_coding MGP_CASTEiJ_T0000071.1 MGP_CASTEiJ_G0000058.1 mouse_genomes_project 12 110694166 110694681 - MGP_CASTEiJ_P0000071 Ighv7-1 IG_V_gene IG_V_gene MGP_CASTEiJ_T0098474.1 MGP_CASTEiJ_G0035405.1 mouse_genomes_project 12 9874275 9874380 - Gm27952 rRNA rRNA MGP_CASTEiJ_T0035393.1 MGP_CASTEiJ_G0019328.1 mouse_genomes_project 12 98541419 98545231 + MGP_CASTEiJ_P0035393 Tmem251 protein_coding protein_coding MGP_CASTEiJ_T0034549.1 MGP_CASTEiJ_G0019067.1 mouse_genomes_project 12 53067702 53088886 - MGP_CASTEiJ_P0034549 Fbxo33 protein_coding protein_coding MGP_CASTEiJ_T0034550.1 MGP_CASTEiJ_G0019067.1 mouse_genomes_project 12 53067704 53073115 - MGP_CASTEiJ_P0034550 Fbxo33 protein_coding protein_coding MGP_CASTEiJ_T0034551.1 MGP_CASTEiJ_G0019067.1 mouse_genomes_project 12 53067705 53074366 - Fbxo33 protein_coding retained_intron MGP_CASTEiJ_T0034552.1 MGP_CASTEiJ_G0019067.1 mouse_genomes_project 12 53073230 53087956 - MGP_CASTEiJ_P0034552 Fbxo33 protein_coding protein_coding MGP_CASTEiJ_T0012502.1 MGP_CASTEiJ_G0010665.1 mouse_genomes_project 12 112705825 112706125 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034567.1 MGP_CASTEiJ_G0019076.1 mouse_genomes_project 12 59205813 59268399 + MGP_CASTEiJ_P0034567 Fancm protein_coding protein_coding MGP_CASTEiJ_T0034568.1 MGP_CASTEiJ_G0019076.1 mouse_genomes_project 12 59205977 59259912 + MGP_CASTEiJ_P0034568 Fancm protein_coding unknown_likely_coding MGP_CASTEiJ_T0003308.1 MGP_CASTEiJ_G0003047.1 mouse_genomes_project 12 98396452 98402283 + Gm20069 antisense antisense MGP_CASTEiJ_T0034500.1 MGP_CASTEiJ_G0019056.1 mouse_genomes_project 12 51030522 51177105 + Mipol1 protein_coding retained_intron MGP_CASTEiJ_T0034501.1 MGP_CASTEiJ_G0019056.1 mouse_genomes_project 12 51030524 51143263 + Mipol1 protein_coding retained_intron MGP_CASTEiJ_T0034502.1 MGP_CASTEiJ_G0019056.1 mouse_genomes_project 12 51030579 51197044 + Mipol1 protein_coding retained_intron MGP_CASTEiJ_T0034503.1 MGP_CASTEiJ_G0019056.1 mouse_genomes_project 12 51091694 51311148 + MGP_CASTEiJ_P0034503 Mipol1 protein_coding protein_coding MGP_CASTEiJ_T0034504.1 MGP_CASTEiJ_G0019056.1 mouse_genomes_project 12 51110500 51344299 + MGP_CASTEiJ_P0034504 Mipol1 protein_coding protein_coding MGP_CASTEiJ_T0034505.1 MGP_CASTEiJ_G0019056.1 mouse_genomes_project 12 51120147 51121736 + Mipol1 protein_coding retained_intron MGP_CASTEiJ_T0034506.1 MGP_CASTEiJ_G0019056.1 mouse_genomes_project 12 51149582 51196463 + Mipol1 protein_coding processed_transcript MGP_CASTEiJ_T0035797.1 MGP_CASTEiJ_G0019468.1 mouse_genomes_project 12 113997033 114036707 + MGP_CASTEiJ_P0035797 Cdca7l protein_coding protein_coding MGP_CASTEiJ_T0035798.1 MGP_CASTEiJ_G0019468.1 mouse_genomes_project 12 113997402 114030625 + MGP_CASTEiJ_P0035798 Cdca7l protein_coding protein_coding MGP_CASTEiJ_T0035799.1 MGP_CASTEiJ_G0019468.1 mouse_genomes_project 12 113997406 114032495 + MGP_CASTEiJ_P0035799 Cdca7l protein_coding protein_coding MGP_CASTEiJ_T0003305.1 MGP_CASTEiJ_G0003045.1 mouse_genomes_project 12 95212965 95237460 + 3300002A11Rik antisense antisense MGP_CASTEiJ_T0003306.1 MGP_CASTEiJ_G0003045.1 mouse_genomes_project 12 95220660 95237460 + 3300002A11Rik antisense antisense MGP_CASTEiJ_T0100546.1 MGP_CASTEiJ_G0037459.1 mouse_genomes_project 12 106149524 106149597 + Gm23787 snoRNA snoRNA MGP_CASTEiJ_T0035141.1 MGP_CASTEiJ_G0019260.1 mouse_genomes_project 12 81295701 81321098 - MGP_CASTEiJ_P0035141 Tgfb3 protein_coding protein_coding MGP_CASTEiJ_T0009603.1 MGP_CASTEiJ_G0007791.1 mouse_genomes_project 12 106178059 106178120 + Mir380 miRNA miRNA MGP_CASTEiJ_T0034478.1 MGP_CASTEiJ_G0019045.1 mouse_genomes_project 12 49159178 49162444 - MGP_CASTEiJ_P0034478 Nfkbia protein_coding protein_coding MGP_CASTEiJ_T0011007.1 MGP_CASTEiJ_G0009195.1 mouse_genomes_project 12 105977026 105977231 + Gm27528 misc_RNA misc_RNA MGP_CASTEiJ_T0035302.1 MGP_CASTEiJ_G0019301.1 mouse_genomes_project 12 95630438 95798723 - MGP_CASTEiJ_P0035302 Efcab11 protein_coding protein_coding MGP_CASTEiJ_T0034720.1 MGP_CASTEiJ_G0019126.1 mouse_genomes_project 12 67434952 67439956 + MGP_CASTEiJ_P0034720 Six6 protein_coding protein_coding MGP_CASTEiJ_T0034701.1 MGP_CASTEiJ_G0019120.1 mouse_genomes_project 12 66897988 66968712 + MGP_CASTEiJ_P0034701 Lrrc9 protein_coding protein_coding MGP_CASTEiJ_T0034702.1 MGP_CASTEiJ_G0019120.1 mouse_genomes_project 12 66898055 66955369 + MGP_CASTEiJ_P0034702 Lrrc9 protein_coding protein_coding MGP_CASTEiJ_T0034703.1 MGP_CASTEiJ_G0019120.1 mouse_genomes_project 12 66898071 66924304 + Lrrc9 protein_coding retained_intron MGP_CASTEiJ_T0034704.1 MGP_CASTEiJ_G0019120.1 mouse_genomes_project 12 66898157 66972473 + Lrrc9 protein_coding processed_transcript MGP_CASTEiJ_T0034705.1 MGP_CASTEiJ_G0019120.1 mouse_genomes_project 12 66898371 66932055 + Lrrc9 protein_coding retained_intron MGP_CASTEiJ_T0034706.1 MGP_CASTEiJ_G0019120.1 mouse_genomes_project 12 66898504 66970522 + MGP_CASTEiJ_P0034706 Lrrc9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034707.1 MGP_CASTEiJ_G0019120.1 mouse_genomes_project 12 66933918 66935510 + Lrrc9 protein_coding retained_intron MGP_CASTEiJ_T0034081.1 MGP_CASTEiJ_G0018906.1 mouse_genomes_project 12 9444502 9557468 + MGP_CASTEiJ_P0034081 Fam49a protein_coding protein_coding MGP_CASTEiJ_T0034082.1 MGP_CASTEiJ_G0018906.1 mouse_genomes_project 12 9444502 9557468 + MGP_CASTEiJ_P0034082 Fam49a protein_coding protein_coding MGP_CASTEiJ_T0034083.1 MGP_CASTEiJ_G0018906.1 mouse_genomes_project 12 9541995 9554016 + MGP_CASTEiJ_P0034083 Fam49a protein_coding unknown_likely_coding MGP_CASTEiJ_T0009555.1 MGP_CASTEiJ_G0007743.1 mouse_genomes_project 12 70573754 70573837 + Mir5101 miRNA miRNA MGP_CASTEiJ_T0034487.1 MGP_CASTEiJ_G0019051.1 mouse_genomes_project 12 50278271 50282217 - MGP_CASTEiJ_P0034487 Nkx2-1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034488.1 MGP_CASTEiJ_G0019051.1 mouse_genomes_project 12 50278276 50282389 - MGP_CASTEiJ_P0034488 Nkx2-1 protein_coding protein_coding MGP_CASTEiJ_T0034489.1 MGP_CASTEiJ_G0019051.1 mouse_genomes_project 12 50278276 50284090 - MGP_CASTEiJ_P0034489 Nkx2-1 protein_coding protein_coding MGP_CASTEiJ_T0034738.1 MGP_CASTEiJ_G0019134.1 mouse_genomes_project 12 68133821 68337056 + MGP_CASTEiJ_P0034738 Prkch protein_coding protein_coding MGP_CASTEiJ_T0034739.1 MGP_CASTEiJ_G0019134.1 mouse_genomes_project 12 68133867 68320542 + MGP_CASTEiJ_P0034739 Prkch protein_coding protein_coding MGP_CASTEiJ_T0034740.1 MGP_CASTEiJ_G0019134.1 mouse_genomes_project 12 68134087 68345987 + MGP_CASTEiJ_P0034740 Prkch protein_coding unknown_likely_coding MGP_CASTEiJ_T0034634.1 MGP_CASTEiJ_G0019100.1 mouse_genomes_project 12 64320852 64344731 - MGP_CASTEiJ_P0034634 Sav1 protein_coding protein_coding MGP_CASTEiJ_T0034439.1 MGP_CASTEiJ_G0019030.1 mouse_genomes_project 12 46923248 47776106 + MGP_CASTEiJ_P0034439 Npas3 protein_coding protein_coding MGP_CASTEiJ_T0034440.1 MGP_CASTEiJ_G0019030.1 mouse_genomes_project 12 46923248 47776107 + MGP_CASTEiJ_P0034440 Npas3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034828.1 MGP_CASTEiJ_G0019165.1 mouse_genomes_project 12 73536315 73632940 + MGP_CASTEiJ_P0034828 Mpp5 protein_coding protein_coding MGP_CASTEiJ_T0034486.1 MGP_CASTEiJ_G0019050.1 mouse_genomes_project 12 50058487 50081290 - MGP_CASTEiJ_P0034486 Mbip protein_coding protein_coding MGP_CASTEiJ_T0033996.1 MGP_CASTEiJ_G0018872.1 mouse_genomes_project 12 1527211 1649656 + MGP_CASTEiJ_P0033996 Itsn2 protein_coding protein_coding MGP_CASTEiJ_T0033997.1 MGP_CASTEiJ_G0018872.1 mouse_genomes_project 12 1548342 1614685 + MGP_CASTEiJ_P0033997 Itsn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034917.1 MGP_CASTEiJ_G0019201.1 mouse_genomes_project 12 77154212 77447795 + MGP_CASTEiJ_P0034917 Sipa1l1 protein_coding protein_coding MGP_CASTEiJ_T0034918.1 MGP_CASTEiJ_G0019201.1 mouse_genomes_project 12 77331494 77447796 + MGP_CASTEiJ_P0034918 Sipa1l1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034084.1 MGP_CASTEiJ_G0018907.1 mouse_genomes_project 12 10149018 10153675 - MGP_CASTEiJ_P0034084 Mycn protein_coding unknown_likely_coding MGP_CASTEiJ_T0034085.1 MGP_CASTEiJ_G0018907.1 mouse_genomes_project 12 10153052 10153923 - Mycn protein_coding processed_transcript MGP_CASTEiJ_T0035719.1 MGP_CASTEiJ_G0019440.1 mouse_genomes_project 12 109255004 109258962 + MGP_CASTEiJ_P0035719 Zbtb42 protein_coding protein_coding MGP_CASTEiJ_T0035720.1 MGP_CASTEiJ_G0019440.1 mouse_genomes_project 12 109255016 109258962 + MGP_CASTEiJ_P0035720 Zbtb42 protein_coding protein_coding MGP_CASTEiJ_T0035721.1 MGP_CASTEiJ_G0019440.1 mouse_genomes_project 12 109255054 109256146 + MGP_CASTEiJ_P0035721 Zbtb42 protein_coding protein_coding MGP_CASTEiJ_T0034296.1 MGP_CASTEiJ_G0018976.1 mouse_genomes_project 12 26029499 26101909 - MGP_CASTEiJ_P0034296 Cdhr3 protein_coding protein_coding MGP_CASTEiJ_T0034762.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70477460 70541183 + MGP_CASTEiJ_P0034762 Syne2 protein_coding protein_coding MGP_CASTEiJ_T0034763.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70477643 70785922 + MGP_CASTEiJ_P0034763 Syne2 protein_coding protein_coding MGP_CASTEiJ_T0034764.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70477643 70785937 + MGP_CASTEiJ_P0034764 Syne2 protein_coding protein_coding MGP_CASTEiJ_T0034765.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70477648 70553333 + Syne2 protein_coding retained_intron MGP_CASTEiJ_T0034766.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70477654 70573529 + MGP_CASTEiJ_P0034766 Syne2 protein_coding protein_coding MGP_CASTEiJ_T0034767.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70477675 70570556 + Syne2 protein_coding retained_intron MGP_CASTEiJ_T0034768.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70511164 70541005 + MGP_CASTEiJ_P0034768 Syne2 protein_coding protein_coding MGP_CASTEiJ_T0034769.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70573869 70578576 + Syne2 protein_coding retained_intron MGP_CASTEiJ_T0034770.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70693894 70699417 + MGP_CASTEiJ_P0034770 Syne2 protein_coding protein_coding MGP_CASTEiJ_T0034771.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70703209 70785931 + MGP_CASTEiJ_P0034771 Syne2 protein_coding protein_coding MGP_CASTEiJ_T0034772.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70721267 70785922 + MGP_CASTEiJ_P0034772 Syne2 protein_coding protein_coding MGP_CASTEiJ_T0034773.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70732249 70740176 + Syne2 protein_coding retained_intron MGP_CASTEiJ_T0034774.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70745629 70769092 + MGP_CASTEiJ_P0034774 Syne2 protein_coding protein_coding MGP_CASTEiJ_T0034775.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70756287 70769702 + MGP_CASTEiJ_P0034775 Syne2 protein_coding protein_coding MGP_CASTEiJ_T0034776.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70756570 70772639 + MGP_CASTEiJ_P0034776 Syne2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034777.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70762411 70785937 + MGP_CASTEiJ_P0034777 Syne2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034778.1 MGP_CASTEiJ_G0019145.1 mouse_genomes_project 12 70775558 70780930 + Syne2 protein_coding retained_intron MGP_CASTEiJ_T0011008.1 MGP_CASTEiJ_G0009196.1 mouse_genomes_project 12 105987463 105987546 + Gm27596 misc_RNA misc_RNA MGP_CASTEiJ_T0011004.1 MGP_CASTEiJ_G0009192.1 mouse_genomes_project 12 86567541 86567864 + Gm26477 misc_RNA misc_RNA MGP_CASTEiJ_T0012493.1 MGP_CASTEiJ_G0010656.1 mouse_genomes_project 12 103484843 103488218 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034139.1 MGP_CASTEiJ_G0018924.1 mouse_genomes_project 12 15898487 16110768 + MGP_CASTEiJ_P0034139 Asap2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034140.1 MGP_CASTEiJ_G0018924.1 mouse_genomes_project 12 16008653 16113423 + MGP_CASTEiJ_P0034140 Asap2 protein_coding protein_coding MGP_CASTEiJ_T0034141.1 MGP_CASTEiJ_G0018924.1 mouse_genomes_project 12 16008653 16113423 + MGP_CASTEiJ_P0034141 Asap2 protein_coding protein_coding MGP_CASTEiJ_T0034142.1 MGP_CASTEiJ_G0018924.1 mouse_genomes_project 12 16008653 16113423 + MGP_CASTEiJ_P0034142 Asap2 protein_coding protein_coding MGP_CASTEiJ_T0034143.1 MGP_CASTEiJ_G0018924.1 mouse_genomes_project 12 16008958 16111155 + MGP_CASTEiJ_P0034143 Asap2 protein_coding protein_coding MGP_CASTEiJ_T0009654.1 MGP_CASTEiJ_G0007842.1 mouse_genomes_project 12 113376049 113376118 + Mir153 miRNA miRNA MGP_CASTEiJ_T0034841.1 MGP_CASTEiJ_G0019172.1 mouse_genomes_project 12 73937738 73964482 + MGP_CASTEiJ_P0034841 Arg2 protein_coding protein_coding MGP_CASTEiJ_T0035449.1 MGP_CASTEiJ_G0019346.1 mouse_genomes_project 12 99510087 99516696 - MGP_CASTEiJ_P0035449 Serpina1f protein_coding protein_coding MGP_CASTEiJ_T0035450.1 MGP_CASTEiJ_G0019346.1 mouse_genomes_project 12 99511676 99517556 - MGP_CASTEiJ_P0035450 Serpina1f protein_coding protein_coding MGP_CASTEiJ_T0035451.1 MGP_CASTEiJ_G0019346.1 mouse_genomes_project 12 99511679 99516746 - MGP_CASTEiJ_P0035451 Serpina1f protein_coding protein_coding MGP_CASTEiJ_T0034784.1 MGP_CASTEiJ_G0019148.1 mouse_genomes_project 12 70895236 70943856 - MGP_CASTEiJ_P0034784 Tex21 protein_coding protein_coding MGP_CASTEiJ_T0034340.1 MGP_CASTEiJ_G0018994.1 mouse_genomes_project 12 29556092 29557032 - MGP_CASTEiJ_P0034340 D630036H23Rik protein_coding protein_coding MGP_CASTEiJ_T0100538.1 MGP_CASTEiJ_G0037451.1 mouse_genomes_project 12 106120447 106120519 + Gm25357 snoRNA snoRNA MGP_CASTEiJ_T0009613.1 MGP_CASTEiJ_G0007801.1 mouse_genomes_project 12 106184967 106185030 + Mir495 miRNA miRNA MGP_CASTEiJ_T0009627.1 MGP_CASTEiJ_G0007815.1 mouse_genomes_project 12 106199985 106200061 + Mir382 miRNA miRNA MGP_CASTEiJ_T0034318.1 MGP_CASTEiJ_G0018983.1 mouse_genomes_project 12 27943839 27944905 - MGP_CASTEiJ_P0034318 protein_coding protein_coding MGP_CASTEiJ_T0099301.1 MGP_CASTEiJ_G0036214.1 mouse_genomes_project 12 46261909 46262016 - Gm23296 snRNA snRNA MGP_CASTEiJ_T0034915.1 MGP_CASTEiJ_G0019200.1 mouse_genomes_project 12 76838855 76996979 + MGP_CASTEiJ_P0034915 Pcnx protein_coding protein_coding MGP_CASTEiJ_T0034916.1 MGP_CASTEiJ_G0019200.1 mouse_genomes_project 12 76840013 76996981 + MGP_CASTEiJ_P0034916 Pcnx protein_coding unknown_likely_coding MGP_CASTEiJ_T0035727.1 MGP_CASTEiJ_G0019444.1 mouse_genomes_project 12 109387919 109394682 + MGP_CASTEiJ_P0035727 BC022687 protein_coding protein_coding MGP_CASTEiJ_T0035728.1 MGP_CASTEiJ_G0019444.1 mouse_genomes_project 12 109387919 109395223 + MGP_CASTEiJ_P0035728 BC022687 protein_coding protein_coding MGP_CASTEiJ_T0000094.1 MGP_CASTEiJ_G0000073.1 mouse_genomes_project 12 111117811 111118269 - MGP_CASTEiJ_P0000094 Ighv6-7 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000220.1 MGP_CASTEiJ_G0000169.1 mouse_genomes_project 12 110486668 110487569 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0012453.1 MGP_CASTEiJ_G0010616.1 mouse_genomes_project 12 51369381 51370967 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000134.1 MGP_CASTEiJ_G0000102.1 mouse_genomes_project 12 112070275 112070734 - MGP_CASTEiJ_P0000134 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034189.1 MGP_CASTEiJ_G0018939.1 mouse_genomes_project 12 19033994 19146293 - MGP_CASTEiJ_P0034189 Rnf144a protein_coding protein_coding MGP_CASTEiJ_T0034190.1 MGP_CASTEiJ_G0018939.1 mouse_genomes_project 12 19033994 19146293 - MGP_CASTEiJ_P0034190 Rnf144a protein_coding protein_coding MGP_CASTEiJ_T0034942.1 MGP_CASTEiJ_G0019204.1 mouse_genomes_project 12 78244495 78384326 - MGP_CASTEiJ_P0034942 Dpf3 protein_coding protein_coding MGP_CASTEiJ_T0034943.1 MGP_CASTEiJ_G0019204.1 mouse_genomes_project 12 78244501 78532346 - MGP_CASTEiJ_P0034943 Dpf3 protein_coding protein_coding MGP_CASTEiJ_T0034944.1 MGP_CASTEiJ_G0019204.1 mouse_genomes_project 12 78292022 78324751 - MGP_CASTEiJ_P0034944 Dpf3 protein_coding protein_coding MGP_CASTEiJ_T0034945.1 MGP_CASTEiJ_G0019204.1 mouse_genomes_project 12 78292788 78532338 - MGP_CASTEiJ_P0034945 Dpf3 protein_coding protein_coding MGP_CASTEiJ_T0034946.1 MGP_CASTEiJ_G0019204.1 mouse_genomes_project 12 78301473 78532338 - MGP_CASTEiJ_P0034946 Dpf3 protein_coding protein_coding MGP_CASTEiJ_T0034947.1 MGP_CASTEiJ_G0019204.1 mouse_genomes_project 12 78301590 78482332 - MGP_CASTEiJ_P0034947 Dpf3 protein_coding protein_coding MGP_CASTEiJ_T0000120.1 MGP_CASTEiJ_G0000090.1 mouse_genomes_project 12 111760391 111987543 - MGP_CASTEiJ_P0000120 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034857.1 MGP_CASTEiJ_G0019179.1 mouse_genomes_project 12 75040729 75142714 - MGP_CASTEiJ_P0034857 Actn1 protein_coding protein_coding MGP_CASTEiJ_T0034858.1 MGP_CASTEiJ_G0019179.1 mouse_genomes_project 12 75042540 75142434 - MGP_CASTEiJ_P0034858 Actn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034859.1 MGP_CASTEiJ_G0019179.1 mouse_genomes_project 12 75042540 75142434 - MGP_CASTEiJ_P0034859 Actn1 protein_coding protein_coding MGP_CASTEiJ_T0034659.1 MGP_CASTEiJ_G0019107.1 mouse_genomes_project 12 65331729 65359575 + MGP_CASTEiJ_P0034659 Actr10 protein_coding protein_coding MGP_CASTEiJ_T0035182.1 MGP_CASTEiJ_G0019274.1 mouse_genomes_project 12 82563252 82576881 + MGP_CASTEiJ_P0035182 Samd15 protein_coding protein_coding MGP_CASTEiJ_T0035183.1 MGP_CASTEiJ_G0019274.1 mouse_genomes_project 12 82563459 82564653 + MGP_CASTEiJ_P0035183 Samd15 protein_coding protein_coding MGP_CASTEiJ_T0006294.1 MGP_CASTEiJ_G0005256.1 mouse_genomes_project 12 103077158 103123604 + 1700013N06Rik lincRNA lincRNA MGP_CASTEiJ_T0000031.1 MGP_CASTEiJ_G0000025.1 mouse_genomes_project 12 110145520 110145620 - IG_D_pseudogene IG_D_pseudogene MGP_CASTEiJ_T0034442.1 MGP_CASTEiJ_G0019032.1 mouse_genomes_project 12 48373974 48385424 - MGP_CASTEiJ_P0034442 Sptssa protein_coding protein_coding MGP_CASTEiJ_T0034711.1 MGP_CASTEiJ_G0019124.1 mouse_genomes_project 12 67230893 67272846 + MGP_CASTEiJ_P0034711 Ppm1a protein_coding protein_coding MGP_CASTEiJ_T0000258.1 MGP_CASTEiJ_G0000207.1 mouse_genomes_project 12 112070274 112070708 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0000101.1 MGP_CASTEiJ_G0000080.1 mouse_genomes_project 12 111216141 111216576 - MGP_CASTEiJ_P0000101 Ighv15-2 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000102.1 MGP_CASTEiJ_G0000080.1 mouse_genomes_project 12 111216141 111216576 - MGP_CASTEiJ_P0000102 Ighv15-2 IG_V_gene IG_V_gene MGP_CASTEiJ_T0102023.1 MGP_CASTEiJ_G0038748.1 mouse_genomes_project 12 70277934 70284666 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099323.1 MGP_CASTEiJ_G0036236.1 mouse_genomes_project 12 75837338 75837445 + Gm23298 snRNA snRNA MGP_CASTEiJ_T0035465.1 MGP_CASTEiJ_G0019353.1 mouse_genomes_project 12 100037751 100046018 - MGP_CASTEiJ_P0035465 protein_coding protein_coding MGP_CASTEiJ_T0099322.1 MGP_CASTEiJ_G0036235.1 mouse_genomes_project 12 75518100 75518204 - Gm23817 snRNA snRNA MGP_CASTEiJ_T0034696.1 MGP_CASTEiJ_G0019119.1 mouse_genomes_project 12 66649814 66673681 - Rtn1 protein_coding processed_transcript MGP_CASTEiJ_T0034697.1 MGP_CASTEiJ_G0019119.1 mouse_genomes_project 12 66649814 66863153 - MGP_CASTEiJ_P0034697 Rtn1 protein_coding protein_coding MGP_CASTEiJ_T0034698.1 MGP_CASTEiJ_G0019119.1 mouse_genomes_project 12 66649815 66674666 - MGP_CASTEiJ_P0034698 Rtn1 protein_coding protein_coding MGP_CASTEiJ_T0034699.1 MGP_CASTEiJ_G0019119.1 mouse_genomes_project 12 66650350 66674666 - MGP_CASTEiJ_P0034699 Rtn1 protein_coding protein_coding MGP_CASTEiJ_T0034700.1 MGP_CASTEiJ_G0019119.1 mouse_genomes_project 12 66661276 66674628 - Rtn1 protein_coding processed_transcript MGP_CASTEiJ_T0034196.1 MGP_CASTEiJ_G0018943.1 mouse_genomes_project 12 21308265 21314422 - protein_coding processed_transcript MGP_CASTEiJ_T0034197.1 MGP_CASTEiJ_G0018943.1 mouse_genomes_project 12 21313763 21322325 - protein_coding processed_transcript MGP_CASTEiJ_T0034198.1 MGP_CASTEiJ_G0018943.1 mouse_genomes_project 12 21313991 21355089 - MGP_CASTEiJ_P0034198 protein_coding protein_coding MGP_CASTEiJ_T0034199.1 MGP_CASTEiJ_G0018943.1 mouse_genomes_project 12 21336256 21355139 - MGP_CASTEiJ_P0034199 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035185.1 MGP_CASTEiJ_G0019276.1 mouse_genomes_project 12 82606333 82641504 - MGP_CASTEiJ_P0035185 Vipas39 protein_coding protein_coding MGP_CASTEiJ_T0035186.1 MGP_CASTEiJ_G0019276.1 mouse_genomes_project 12 82606333 82641504 - MGP_CASTEiJ_P0035186 Vipas39 protein_coding protein_coding MGP_CASTEiJ_T0035187.1 MGP_CASTEiJ_G0019276.1 mouse_genomes_project 12 82606333 82639467 - MGP_CASTEiJ_P0035187 Vipas39 protein_coding protein_coding MGP_CASTEiJ_T0009647.1 MGP_CASTEiJ_G0007835.1 mouse_genomes_project 12 109234602 109234677 - Mir6939 miRNA miRNA MGP_CASTEiJ_T0000020.1 MGP_CASTEiJ_G0000015.1 mouse_genomes_project 12 110108493 110108504 - MGP_CASTEiJ_P0000020 Ighd4-1 IG_D_gene IG_D_gene MGP_CASTEiJ_T0034594.1 MGP_CASTEiJ_G0019084.1 mouse_genomes_project 12 63503601 63511887 - MGP_CASTEiJ_P0034594 Dnaaf2 protein_coding protein_coding MGP_CASTEiJ_T0009634.1 MGP_CASTEiJ_G0007822.1 mouse_genomes_project 12 106206696 106206764 + Mir377 miRNA miRNA MGP_CASTEiJ_T0034144.1 MGP_CASTEiJ_G0018925.1 mouse_genomes_project 12 16113056 16130440 - MGP_CASTEiJ_P0034144 Itgb1bp1 protein_coding protein_coding MGP_CASTEiJ_T0034145.1 MGP_CASTEiJ_G0018925.1 mouse_genomes_project 12 16113344 16130300 - MGP_CASTEiJ_P0034145 Itgb1bp1 protein_coding protein_coding MGP_CASTEiJ_T0034146.1 MGP_CASTEiJ_G0018925.1 mouse_genomes_project 12 16113957 16115377 - MGP_CASTEiJ_P0034146 Itgb1bp1 protein_coding protein_coding MGP_CASTEiJ_T0034147.1 MGP_CASTEiJ_G0018925.1 mouse_genomes_project 12 16114541 16130388 - MGP_CASTEiJ_P0034147 Itgb1bp1 protein_coding protein_coding MGP_CASTEiJ_T0034148.1 MGP_CASTEiJ_G0018925.1 mouse_genomes_project 12 16114679 16116024 - Itgb1bp1 protein_coding retained_intron MGP_CASTEiJ_T0034007.1 MGP_CASTEiJ_G0018880.1 mouse_genomes_project 12 1797189 1809122 - Mfsd2b protein_coding retained_intron MGP_CASTEiJ_T0034008.1 MGP_CASTEiJ_G0018880.1 mouse_genomes_project 12 1797189 1809125 - MGP_CASTEiJ_P0034008 Mfsd2b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034009.1 MGP_CASTEiJ_G0018880.1 mouse_genomes_project 12 1797821 1809112 - Mfsd2b protein_coding retained_intron MGP_CASTEiJ_T0034010.1 MGP_CASTEiJ_G0018880.1 mouse_genomes_project 12 1797821 1809125 - MGP_CASTEiJ_P0034010 Mfsd2b protein_coding protein_coding MGP_CASTEiJ_T0034011.1 MGP_CASTEiJ_G0018880.1 mouse_genomes_project 12 1797821 1809125 - MGP_CASTEiJ_P0034011 Mfsd2b protein_coding protein_coding MGP_CASTEiJ_T0034012.1 MGP_CASTEiJ_G0018880.1 mouse_genomes_project 12 1798314 1809126 - Mfsd2b protein_coding retained_intron MGP_CASTEiJ_T0034013.1 MGP_CASTEiJ_G0018880.1 mouse_genomes_project 12 1802012 1804030 - Mfsd2b protein_coding retained_intron MGP_CASTEiJ_T0034014.1 MGP_CASTEiJ_G0018880.1 mouse_genomes_project 12 1803716 1809126 - MGP_CASTEiJ_P0034014 Mfsd2b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012447.1 MGP_CASTEiJ_G0010610.1 mouse_genomes_project 12 48276219 48276597 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035397.1 MGP_CASTEiJ_G0019331.1 mouse_genomes_project 12 98586688 98678140 - MGP_CASTEiJ_P0035397 Btbd7 protein_coding protein_coding MGP_CASTEiJ_T0034335.1 MGP_CASTEiJ_G0018991.1 mouse_genomes_project 12 29338336 29380935 + MGP_CASTEiJ_P0034335 Ankmy2 protein_coding protein_coding MGP_CASTEiJ_T0034412.1 MGP_CASTEiJ_G0019015.1 mouse_genomes_project 12 42948193 42956817 + MGP_CASTEiJ_P0034412 Gm43517 protein_coding protein_coding MGP_CASTEiJ_T0035738.1 MGP_CASTEiJ_G0019451.1 mouse_genomes_project 12 109601989 109603954 + MGP_CASTEiJ_P0035738 9230104M06Rik protein_coding protein_coding MGP_CASTEiJ_T0034996.1 MGP_CASTEiJ_G0019219.1 mouse_genomes_project 12 79194313 79204891 + MGP_CASTEiJ_P0034996 Acot6 protein_coding protein_coding MGP_CASTEiJ_T0035413.1 MGP_CASTEiJ_G0019335.1 mouse_genomes_project 12 99140537 99148225 + MGP_CASTEiJ_P0035413 Fam181a protein_coding protein_coding MGP_CASTEiJ_T0035414.1 MGP_CASTEiJ_G0019335.1 mouse_genomes_project 12 99144507 99147469 + MGP_CASTEiJ_P0035414 Fam181a protein_coding protein_coding MGP_CASTEiJ_T0035415.1 MGP_CASTEiJ_G0019335.1 mouse_genomes_project 12 99144513 99148225 + MGP_CASTEiJ_P0035415 Fam181a protein_coding protein_coding MGP_CASTEiJ_T0034466.1 MGP_CASTEiJ_G0019041.1 mouse_genomes_project 12 48905117 48923737 + MGP_CASTEiJ_P0034466 protein_coding protein_coding MGP_CASTEiJ_T0000030.1 MGP_CASTEiJ_G0000024.1 mouse_genomes_project 12 110239910 110239933 - MGP_CASTEiJ_P0000030 Gm16968 IG_D_gene IG_D_gene MGP_CASTEiJ_T0000218.1 MGP_CASTEiJ_G0000167.1 mouse_genomes_project 12 110486663 110487569 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0099304.1 MGP_CASTEiJ_G0036217.1 mouse_genomes_project 12 48429372 48429536 + Gm22513 snRNA snRNA MGP_CASTEiJ_T0006234.1 MGP_CASTEiJ_G0005209.1 mouse_genomes_project 12 16269898 16271586 + Gm4419 lincRNA lincRNA MGP_CASTEiJ_T0009648.1 MGP_CASTEiJ_G0007836.1 mouse_genomes_project 12 109314154 109314224 + Mir6940 miRNA miRNA MGP_CASTEiJ_T0100503.1 MGP_CASTEiJ_G0037416.1 mouse_genomes_project 12 43126643 43126772 - Gm25015 snoRNA snoRNA MGP_CASTEiJ_T0034468.1 MGP_CASTEiJ_G0019043.1 mouse_genomes_project 12 48941768 49040789 + MGP_CASTEiJ_P0034468 1110008L16Rik protein_coding protein_coding MGP_CASTEiJ_T0034469.1 MGP_CASTEiJ_G0019043.1 mouse_genomes_project 12 48944828 49040865 + MGP_CASTEiJ_P0034469 1110008L16Rik protein_coding protein_coding MGP_CASTEiJ_T0034470.1 MGP_CASTEiJ_G0019043.1 mouse_genomes_project 12 48944941 48949772 + 1110008L16Rik protein_coding retained_intron MGP_CASTEiJ_T0034471.1 MGP_CASTEiJ_G0019043.1 mouse_genomes_project 12 48945438 49040882 + MGP_CASTEiJ_P0034471 1110008L16Rik protein_coding protein_coding MGP_CASTEiJ_T0034472.1 MGP_CASTEiJ_G0019043.1 mouse_genomes_project 12 48945456 49040902 + MGP_CASTEiJ_P0034472 1110008L16Rik protein_coding protein_coding MGP_CASTEiJ_T0034473.1 MGP_CASTEiJ_G0019043.1 mouse_genomes_project 12 48945481 49040882 + MGP_CASTEiJ_P0034473 1110008L16Rik protein_coding protein_coding MGP_CASTEiJ_T0006233.1 MGP_CASTEiJ_G0005208.1 mouse_genomes_project 12 13123680 13198663 + Gm5432 lincRNA lincRNA MGP_CASTEiJ_T0034240.1 MGP_CASTEiJ_G0018960.1 mouse_genomes_project 12 24064065 24064620 + MGP_CASTEiJ_P0034240 6030469F06Rik protein_coding protein_coding MGP_CASTEiJ_T0035505.1 MGP_CASTEiJ_G0019377.1 mouse_genomes_project 12 101715564 101788896 - MGP_CASTEiJ_P0035505 Atg2b protein_coding protein_coding MGP_CASTEiJ_T0035506.1 MGP_CASTEiJ_G0019377.1 mouse_genomes_project 12 101715569 101788917 - MGP_CASTEiJ_P0035506 Atg2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0035507.1 MGP_CASTEiJ_G0019377.1 mouse_genomes_project 12 101718803 101788522 - MGP_CASTEiJ_P0035507 Atg2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0009618.1 MGP_CASTEiJ_G0007806.1 mouse_genomes_project 12 106189929 106190049 - Gm25252 miRNA miRNA MGP_CASTEiJ_T0033995.1 MGP_CASTEiJ_G0018871.1 mouse_genomes_project 12 1527029 1527131 - MGP_CASTEiJ_P0033995 Gm3625 protein_coding protein_coding MGP_CASTEiJ_T0035303.1 MGP_CASTEiJ_G0019302.1 mouse_genomes_project 12 95799798 95863683 + Tdp1 protein_coding retained_intron MGP_CASTEiJ_T0035304.1 MGP_CASTEiJ_G0019302.1 mouse_genomes_project 12 95799812 95804305 + Tdp1 protein_coding processed_transcript MGP_CASTEiJ_T0035305.1 MGP_CASTEiJ_G0019302.1 mouse_genomes_project 12 95799815 95882225 + MGP_CASTEiJ_P0035305 Tdp1 protein_coding protein_coding MGP_CASTEiJ_T0035306.1 MGP_CASTEiJ_G0019302.1 mouse_genomes_project 12 95801792 95809420 + MGP_CASTEiJ_P0035306 Tdp1 protein_coding protein_coding MGP_CASTEiJ_T0035307.1 MGP_CASTEiJ_G0019302.1 mouse_genomes_project 12 95809254 95882220 + MGP_CASTEiJ_P0035307 Tdp1 protein_coding protein_coding MGP_CASTEiJ_T0035308.1 MGP_CASTEiJ_G0019302.1 mouse_genomes_project 12 95831457 95832403 + Tdp1 protein_coding retained_intron MGP_CASTEiJ_T0035309.1 MGP_CASTEiJ_G0019302.1 mouse_genomes_project 12 95833841 95882225 + Tdp1 protein_coding retained_intron MGP_CASTEiJ_T0034821.1 MGP_CASTEiJ_G0019161.1 mouse_genomes_project 12 71665280 71691701 - MGP_CASTEiJ_P0034821 Max protein_coding unknown_likely_coding MGP_CASTEiJ_T0034608.1 MGP_CASTEiJ_G0019091.1 mouse_genomes_project 12 63704652 63708484 + MGP_CASTEiJ_P0034608 Arf6 protein_coding protein_coding MGP_CASTEiJ_T0034609.1 MGP_CASTEiJ_G0019091.1 mouse_genomes_project 12 63705227 63723697 + MGP_CASTEiJ_P0034609 Arf6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006310.1 MGP_CASTEiJ_G0005267.1 mouse_genomes_project 12 105990507 105991434 + lincRNA lincRNA MGP_CASTEiJ_T0035005.1 MGP_CASTEiJ_G0019222.1 mouse_genomes_project 12 79247107 79323665 - MGP_CASTEiJ_P0035005 Elmsan1 protein_coding protein_coding MGP_CASTEiJ_T0035006.1 MGP_CASTEiJ_G0019222.1 mouse_genomes_project 12 79247209 79291874 - MGP_CASTEiJ_P0035006 Elmsan1 protein_coding protein_coding MGP_CASTEiJ_T0035007.1 MGP_CASTEiJ_G0019222.1 mouse_genomes_project 12 79251018 79253220 - Elmsan1 protein_coding processed_transcript MGP_CASTEiJ_T0035008.1 MGP_CASTEiJ_G0019222.1 mouse_genomes_project 12 79254513 79258129 - Elmsan1 protein_coding processed_transcript MGP_CASTEiJ_T0035601.1 MGP_CASTEiJ_G0019403.1 mouse_genomes_project 12 107134730 107140379 - MGP_CASTEiJ_P0035601 Hsp90aa1 protein_coding protein_coding MGP_CASTEiJ_T0035602.1 MGP_CASTEiJ_G0019403.1 mouse_genomes_project 12 107136707 107137179 - Hsp90aa1 protein_coding retained_intron MGP_CASTEiJ_T0035603.1 MGP_CASTEiJ_G0019403.1 mouse_genomes_project 12 107137658 107138291 - Hsp90aa1 protein_coding retained_intron MGP_CASTEiJ_T0035604.1 MGP_CASTEiJ_G0019403.1 mouse_genomes_project 12 107138173 107139660 - Hsp90aa1 protein_coding retained_intron MGP_CASTEiJ_T0035605.1 MGP_CASTEiJ_G0019403.1 mouse_genomes_project 12 107138626 107148029 - MGP_CASTEiJ_P0035605 Hsp90aa1 protein_coding protein_coding MGP_CASTEiJ_T0035606.1 MGP_CASTEiJ_G0019403.1 mouse_genomes_project 12 107139262 107140241 - MGP_CASTEiJ_P0035606 Hsp90aa1 protein_coding protein_coding MGP_CASTEiJ_T0035607.1 MGP_CASTEiJ_G0019403.1 mouse_genomes_project 12 107139278 107139939 - MGP_CASTEiJ_P0035607 Hsp90aa1 protein_coding protein_coding MGP_CASTEiJ_T0098830.1 MGP_CASTEiJ_G0035757.1 mouse_genomes_project 12 80091552 80092521 - Gm17193 sense_intronic sense_intronic MGP_CASTEiJ_T0035459.1 MGP_CASTEiJ_G0019349.1 mouse_genomes_project 12 99887041 99902751 - MGP_CASTEiJ_P0035459 Serpina12 protein_coding protein_coding MGP_CASTEiJ_T0009598.1 MGP_CASTEiJ_G0007786.1 mouse_genomes_project 12 106175320 106175386 + Mir379 miRNA miRNA MGP_CASTEiJ_T0099293.1 MGP_CASTEiJ_G0036206.1 mouse_genomes_project 12 11783502 11783609 + Gm25414 snRNA snRNA MGP_CASTEiJ_T0012465.1 MGP_CASTEiJ_G0010628.1 mouse_genomes_project 12 70834541 70834775 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035640.1 MGP_CASTEiJ_G0019416.1 mouse_genomes_project 12 107900656 107914244 + MGP_CASTEiJ_P0035640 Exoc3l4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003273.1 MGP_CASTEiJ_G0003017.1 mouse_genomes_project 12 712910 715863 - Dnmt3aos antisense antisense MGP_CASTEiJ_T0000013.1 MGP_CASTEiJ_G0000010.1 mouse_genomes_project 12 110082103 110091681 - MGP_CASTEiJ_P0000013 Ighd IG_C_gene IG_C_gene MGP_CASTEiJ_T0000014.1 MGP_CASTEiJ_G0000010.1 mouse_genomes_project 12 110085067 110091681 - MGP_CASTEiJ_P0000014 Ighd IG_C_gene IG_C_gene MGP_CASTEiJ_T0035771.1 MGP_CASTEiJ_G0000010.1 mouse_genomes_project 12 110082099 110091661 - MGP_CASTEiJ_P0035771 Ighd IG_C_gene unknown_likely_coding MGP_CASTEiJ_T0035772.1 MGP_CASTEiJ_G0000010.1 mouse_genomes_project 12 110082099 110091520 - MGP_CASTEiJ_P0035772 Ighd IG_C_gene unknown_likely_coding MGP_CASTEiJ_T0035775.1 MGP_CASTEiJ_G0019460.1 mouse_genomes_project 12 110256339 110259775 + MGP_CASTEiJ_P0035775 protein_coding protein_coding MGP_CASTEiJ_T0035764.1 MGP_CASTEiJ_G0019457.1 mouse_genomes_project 12 109774583 109782731 + MGP_CASTEiJ_P0035764 4930427A07Rik protein_coding protein_coding MGP_CASTEiJ_T0035765.1 MGP_CASTEiJ_G0019457.1 mouse_genomes_project 12 109774592 109775089 + 4930427A07Rik protein_coding retained_intron MGP_CASTEiJ_T0035766.1 MGP_CASTEiJ_G0019457.1 mouse_genomes_project 12 109774602 109784438 + MGP_CASTEiJ_P0035766 4930427A07Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035767.1 MGP_CASTEiJ_G0019457.1 mouse_genomes_project 12 109774618 109775752 + 4930427A07Rik protein_coding retained_intron MGP_CASTEiJ_T0035768.1 MGP_CASTEiJ_G0019457.1 mouse_genomes_project 12 109774668 109779990 + MGP_CASTEiJ_P0035768 4930427A07Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035769.1 MGP_CASTEiJ_G0019457.1 mouse_genomes_project 12 109775733 109782734 + 4930427A07Rik protein_coding retained_intron MGP_CASTEiJ_T0034163.1 MGP_CASTEiJ_G0018931.1 mouse_genomes_project 12 17118686 17187233 + MGP_CASTEiJ_P0034163 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006337.1 MGP_CASTEiJ_G0005276.1 mouse_genomes_project 12 108067408 108069499 - 2810029C07Rik lincRNA lincRNA MGP_CASTEiJ_T0012457.1 MGP_CASTEiJ_G0010620.1 mouse_genomes_project 12 55429861 55430390 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034889.1 MGP_CASTEiJ_G0019193.1 mouse_genomes_project 12 76301285 76443796 - MGP_CASTEiJ_P0034889 Cox16 protein_coding protein_coding MGP_CASTEiJ_T0034890.1 MGP_CASTEiJ_G0019193.1 mouse_genomes_project 12 76301427 76443759 - MGP_CASTEiJ_P0034890 Cox16 protein_coding protein_coding MGP_CASTEiJ_T0034893.1 MGP_CASTEiJ_G0019193.1 mouse_genomes_project 12 76429073 76443806 - MGP_CASTEiJ_P0034893 Cox16 protein_coding protein_coding MGP_CASTEiJ_T0034894.1 MGP_CASTEiJ_G0019193.1 mouse_genomes_project 12 76430460 76443515 - Cox16 protein_coding processed_transcript MGP_CASTEiJ_T0034895.1 MGP_CASTEiJ_G0019193.1 mouse_genomes_project 12 76430460 76443799 - MGP_CASTEiJ_P0034895 Cox16 protein_coding protein_coding MGP_CASTEiJ_T0034896.1 MGP_CASTEiJ_G0019193.1 mouse_genomes_project 12 76430462 76443537 - Cox16 protein_coding processed_transcript MGP_CASTEiJ_T0034897.1 MGP_CASTEiJ_G0019193.1 mouse_genomes_project 12 76432601 76443813 - Cox16 protein_coding processed_transcript MGP_CASTEiJ_T0034898.1 MGP_CASTEiJ_G0019193.1 mouse_genomes_project 12 76432622 76443800 - MGP_CASTEiJ_P0034898 Cox16 protein_coding protein_coding MGP_CASTEiJ_T0034902.1 MGP_CASTEiJ_G0019193.1 mouse_genomes_project 12 76438832 76443771 - Cox16 protein_coding retained_intron MGP_CASTEiJ_T0000023.1 MGP_CASTEiJ_G0000018.1 mouse_genomes_project 12 110145828 110145838 - MGP_CASTEiJ_P0000023 Ighd5-4 IG_D_gene IG_D_gene MGP_CASTEiJ_T0012494.1 MGP_CASTEiJ_G0010657.1 mouse_genomes_project 12 103924572 103925414 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035471.1 MGP_CASTEiJ_G0019357.1 mouse_genomes_project 12 100173395 100175803 + Serpina3g protein_coding processed_transcript MGP_CASTEiJ_T0035473.1 MGP_CASTEiJ_G0019357.1 mouse_genomes_project 12 100175500 100179513 + MGP_CASTEiJ_P0035473 Serpina3g protein_coding protein_coding MGP_CASTEiJ_T0000128.1 MGP_CASTEiJ_G0000097.1 mouse_genomes_project 12 112070274 112070708 - MGP_CASTEiJ_P0000128 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000129.1 MGP_CASTEiJ_G0000097.1 mouse_genomes_project 12 112070274 112070568 - MGP_CASTEiJ_P0000129 IG_V_gene IG_V_gene MGP_CASTEiJ_T0006246.1 MGP_CASTEiJ_G0005217.1 mouse_genomes_project 12 26121048 26148853 + Gm16267 lincRNA lincRNA MGP_CASTEiJ_T0035725.1 MGP_CASTEiJ_G0019442.1 mouse_genomes_project 12 109341399 109349732 + MGP_CASTEiJ_P0035725 Pld4 protein_coding protein_coding MGP_CASTEiJ_T0098472.1 MGP_CASTEiJ_G0035403.1 mouse_genomes_project 12 2821589 2821704 + Gm23752 rRNA rRNA MGP_CASTEiJ_T0000137.1 MGP_CASTEiJ_G0000105.1 mouse_genomes_project 12 112070275 112070730 - MGP_CASTEiJ_P0000137 IG_V_gene IG_V_gene MGP_CASTEiJ_T0035051.1 MGP_CASTEiJ_G0019233.1 mouse_genomes_project 12 79740748 79757125 - MGP_CASTEiJ_P0035051 Abcd4 protein_coding protein_coding MGP_CASTEiJ_T0009543.1 MGP_CASTEiJ_G0007731.1 mouse_genomes_project 12 33620483 33620583 - Mir1938 miRNA miRNA MGP_CASTEiJ_T0006288.1 MGP_CASTEiJ_G0005253.1 mouse_genomes_project 12 102639631 102644736 - 1700121N20Rik lincRNA lincRNA MGP_CASTEiJ_T0035794.1 MGP_CASTEiJ_G0019467.1 mouse_genomes_project 12 113651911 113906554 + MGP_CASTEiJ_P0035794 Rapgef5 protein_coding protein_coding MGP_CASTEiJ_T0035795.1 MGP_CASTEiJ_G0019467.1 mouse_genomes_project 12 113669423 113834318 + MGP_CASTEiJ_P0035795 Rapgef5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035796.1 MGP_CASTEiJ_G0019467.1 mouse_genomes_project 12 113669552 113909316 + MGP_CASTEiJ_P0035796 Rapgef5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009581.1 MGP_CASTEiJ_G0007769.1 mouse_genomes_project 12 106038881 106038942 - Mir3544 miRNA miRNA MGP_CASTEiJ_T0012499.1 MGP_CASTEiJ_G0010662.1 mouse_genomes_project 12 110069540 110069897 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006333.1 MGP_CASTEiJ_G0005273.1 mouse_genomes_project 12 107307071 107309935 - Gm26912 lincRNA lincRNA MGP_CASTEiJ_T0012469.1 MGP_CASTEiJ_G0010632.1 mouse_genomes_project 12 74980763 74981658 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100518.1 MGP_CASTEiJ_G0037431.1 mouse_genomes_project 12 72938154 72938275 + Gm24994 snoRNA snoRNA MGP_CASTEiJ_T0034090.1 MGP_CASTEiJ_G0018910.1 mouse_genomes_project 12 11399659 11404118 - MGP_CASTEiJ_P0034090 Fam84a protein_coding protein_coding MGP_CASTEiJ_T0006304.1 MGP_CASTEiJ_G0005265.1 mouse_genomes_project 12 104943749 104965631 - Gm16596 lincRNA lincRNA MGP_CASTEiJ_T0009632.1 MGP_CASTEiJ_G0007820.1 mouse_genomes_project 12 106204621 106204687 + Mir154 miRNA miRNA MGP_CASTEiJ_T0000084.1 MGP_CASTEiJ_G0000066.1 mouse_genomes_project 12 110910636 110910930 - MGP_CASTEiJ_P0000084 Ighv9-4 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000085.1 MGP_CASTEiJ_G0000066.1 mouse_genomes_project 12 110910636 110911065 - MGP_CASTEiJ_P0000085 Ighv9-4 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034019.1 MGP_CASTEiJ_G0018883.1 mouse_genomes_project 12 1995665 2085320 - MGP_CASTEiJ_P0034019 Klhl29 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034020.1 MGP_CASTEiJ_G0018883.1 mouse_genomes_project 12 2025273 2330352 - MGP_CASTEiJ_P0034020 Klhl29 protein_coding protein_coding MGP_CASTEiJ_T0035502.1 MGP_CASTEiJ_G0019376.1 mouse_genomes_project 12 101704768 101707063 + MGP_CASTEiJ_P0035502 Bdkrb1 protein_coding protein_coding MGP_CASTEiJ_T0035503.1 MGP_CASTEiJ_G0019376.1 mouse_genomes_project 12 101704802 101706715 + MGP_CASTEiJ_P0035503 Bdkrb1 protein_coding protein_coding MGP_CASTEiJ_T0035504.1 MGP_CASTEiJ_G0019376.1 mouse_genomes_project 12 101705818 101707152 + MGP_CASTEiJ_P0035504 Bdkrb1 protein_coding protein_coding MGP_CASTEiJ_T0035057.1 MGP_CASTEiJ_G0019237.1 mouse_genomes_project 12 79934761 79936592 + MGP_CASTEiJ_P0035057 Isca2 protein_coding protein_coding MGP_CASTEiJ_T0098475.1 MGP_CASTEiJ_G0035406.1 mouse_genomes_project 12 18407451 18407557 + Gm22527 rRNA rRNA MGP_CASTEiJ_T0035733.1 MGP_CASTEiJ_G0019449.1 mouse_genomes_project 12 109556656 109575940 - MGP_CASTEiJ_P0035733 Brf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035734.1 MGP_CASTEiJ_G0019449.1 mouse_genomes_project 12 109560823 109602647 - MGP_CASTEiJ_P0035734 Brf1 protein_coding protein_coding MGP_CASTEiJ_T0034587.1 MGP_CASTEiJ_G0019080.1 mouse_genomes_project 12 63466207 63467672 - MGP_CASTEiJ_P0034587 Rps29 protein_coding protein_coding MGP_CASTEiJ_T0034588.1 MGP_CASTEiJ_G0019080.1 mouse_genomes_project 12 63466843 63467540 - Rps29 protein_coding retained_intron MGP_CASTEiJ_T0034195.1 MGP_CASTEiJ_G0018942.1 mouse_genomes_project 12 20107952 20118209 - MGP_CASTEiJ_P0034195 Sox11 protein_coding protein_coding MGP_CASTEiJ_T0035690.1 MGP_CASTEiJ_G0019430.1 mouse_genomes_project 12 108510186 108608496 + MGP_CASTEiJ_P0035690 Tdrd9 protein_coding protein_coding MGP_CASTEiJ_T0035696.1 MGP_CASTEiJ_G0019430.1 mouse_genomes_project 12 108534011 108607994 + MGP_CASTEiJ_P0035696 Tdrd9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035697.1 MGP_CASTEiJ_G0019430.1 mouse_genomes_project 12 108534011 108607994 + MGP_CASTEiJ_P0035697 Tdrd9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035698.1 MGP_CASTEiJ_G0019430.1 mouse_genomes_project 12 108553179 108566208 + Tdrd9 protein_coding retained_intron MGP_CASTEiJ_T0035699.1 MGP_CASTEiJ_G0019430.1 mouse_genomes_project 12 108566652 108582525 + Tdrd9 protein_coding processed_transcript MGP_CASTEiJ_T0035700.1 MGP_CASTEiJ_G0019430.1 mouse_genomes_project 12 108602805 108607254 + Tdrd9 protein_coding retained_intron MGP_CASTEiJ_T0009575.1 MGP_CASTEiJ_G0007763.1 mouse_genomes_project 12 105263037 105263133 + Mir345 miRNA miRNA MGP_CASTEiJ_T0034212.1 MGP_CASTEiJ_G0018951.1 mouse_genomes_project 12 22361089 22776238 + MGP_CASTEiJ_P0034212 Myt1l protein_coding protein_coding MGP_CASTEiJ_T0034213.1 MGP_CASTEiJ_G0018951.1 mouse_genomes_project 12 22368638 22776238 + MGP_CASTEiJ_P0034213 Myt1l protein_coding protein_coding MGP_CASTEiJ_T0009586.1 MGP_CASTEiJ_G0007774.1 mouse_genomes_project 12 106043478 106043569 + Mir431 miRNA miRNA MGP_CASTEiJ_T0035284.1 MGP_CASTEiJ_G0019298.1 mouse_genomes_project 12 94631588 94755190 - MGP_CASTEiJ_P0035284 Eml5 protein_coding protein_coding MGP_CASTEiJ_T0035285.1 MGP_CASTEiJ_G0019298.1 mouse_genomes_project 12 94646939 94754734 - MGP_CASTEiJ_P0035285 Eml5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035286.1 MGP_CASTEiJ_G0019298.1 mouse_genomes_project 12 94671147 94754764 - MGP_CASTEiJ_P0035286 Eml5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0102022.1 MGP_CASTEiJ_G0038747.1 mouse_genomes_project 12 48408582 48409085 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0034437.1 MGP_CASTEiJ_G0019028.1 mouse_genomes_project 12 46156565 46228669 + MGP_CASTEiJ_P0034437 Arhgap5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034569.1 MGP_CASTEiJ_G0019077.1 mouse_genomes_project 12 59269075 59311277 - Mis18bp1 protein_coding retained_intron MGP_CASTEiJ_T0034570.1 MGP_CASTEiJ_G0019077.1 mouse_genomes_project 12 59269075 59311253 - MGP_CASTEiJ_P0034570 Mis18bp1 protein_coding protein_coding MGP_CASTEiJ_T0034571.1 MGP_CASTEiJ_G0019077.1 mouse_genomes_project 12 59272664 59275089 - Mis18bp1 protein_coding retained_intron MGP_CASTEiJ_T0034572.1 MGP_CASTEiJ_G0019077.1 mouse_genomes_project 12 59289680 59291997 - Mis18bp1 protein_coding processed_transcript MGP_CASTEiJ_T0034573.1 MGP_CASTEiJ_G0019077.1 mouse_genomes_project 12 59291620 59311239 - Mis18bp1 protein_coding processed_transcript MGP_CASTEiJ_T0034574.1 MGP_CASTEiJ_G0019077.1 mouse_genomes_project 12 59292922 59311251 - Mis18bp1 protein_coding retained_intron MGP_CASTEiJ_T0035107.1 MGP_CASTEiJ_G0019253.1 mouse_genomes_project 12 80633113 80636486 + MGP_CASTEiJ_P0035107 protein_coding protein_coding MGP_CASTEiJ_T0099290.1 MGP_CASTEiJ_G0036203.1 mouse_genomes_project 12 7034081 7034185 - Gm22845 snRNA snRNA MGP_CASTEiJ_T0010993.1 MGP_CASTEiJ_G0009181.1 mouse_genomes_project 12 28107652 28107893 - Gm24359 misc_RNA misc_RNA MGP_CASTEiJ_T0012503.1 MGP_CASTEiJ_G0010666.1 mouse_genomes_project 12 113983558 113983903 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034595.1 MGP_CASTEiJ_G0019085.1 mouse_genomes_project 12 63510668 63513332 + MGP_CASTEiJ_P0034595 9330151L19Rik protein_coding protein_coding MGP_CASTEiJ_T0006231.1 MGP_CASTEiJ_G0005206.1 mouse_genomes_project 12 9984902 9991198 + Platr19 lincRNA lincRNA MGP_CASTEiJ_T0100504.1 MGP_CASTEiJ_G0037417.1 mouse_genomes_project 12 44680133 44680250 + Gm22088 snoRNA snoRNA MGP_CASTEiJ_T0035558.1 MGP_CASTEiJ_G0019391.1 mouse_genomes_project 12 105097933 105115800 - MGP_CASTEiJ_P0035558 Degs2 protein_coding protein_coding MGP_CASTEiJ_T0035559.1 MGP_CASTEiJ_G0019391.1 mouse_genomes_project 12 105101361 105115800 - MGP_CASTEiJ_P0035559 Degs2 protein_coding protein_coding MGP_CASTEiJ_T0000821.1 MGP_CASTEiJ_G0000761.1 mouse_genomes_project 12 54763952 54775373 + TEC TEC MGP_CASTEiJ_T0099316.1 MGP_CASTEiJ_G0036229.1 mouse_genomes_project 12 65054922 65055023 + Gm24474 snRNA snRNA MGP_CASTEiJ_T0016592.1 MGP_CASTEiJ_G0014556.1 mouse_genomes_project 12 112196457 112233942 - Gm20658 processed_transcript processed_transcript MGP_CASTEiJ_T0016593.1 MGP_CASTEiJ_G0014556.1 mouse_genomes_project 12 112196480 112234069 - Gm20658 processed_transcript processed_transcript MGP_CASTEiJ_T0034312.1 MGP_CASTEiJ_G0018979.1 mouse_genomes_project 12 26457190 26465628 + MGP_CASTEiJ_P0034312 Twistnb protein_coding protein_coding MGP_CASTEiJ_T0000223.1 MGP_CASTEiJ_G0000172.1 mouse_genomes_project 12 110604006 110604484 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0099330.1 MGP_CASTEiJ_G0036243.1 mouse_genomes_project 12 109834186 109834290 + Gm25622 snRNA snRNA MGP_CASTEiJ_T0016571.1 MGP_CASTEiJ_G0014552.1 mouse_genomes_project 12 98459114 98523883 - Gm28373 processed_transcript processed_transcript MGP_CASTEiJ_T0035608.1 MGP_CASTEiJ_G0019404.1 mouse_genomes_project 12 107188946 107268796 + MGP_CASTEiJ_P0035608 protein_coding protein_coding MGP_CASTEiJ_T0035609.1 MGP_CASTEiJ_G0019404.1 mouse_genomes_project 12 107200625 107259194 + MGP_CASTEiJ_P0035609 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035610.1 MGP_CASTEiJ_G0019404.1 mouse_genomes_project 12 107200634 107202886 + protein_coding retained_intron MGP_CASTEiJ_T0035611.1 MGP_CASTEiJ_G0019404.1 mouse_genomes_project 12 107200663 107204886 + protein_coding processed_transcript MGP_CASTEiJ_T0035612.1 MGP_CASTEiJ_G0019404.1 mouse_genomes_project 12 107200854 107259366 + MGP_CASTEiJ_P0035612 protein_coding protein_coding MGP_CASTEiJ_T0000034.1 MGP_CASTEiJ_G0000028.1 mouse_genomes_project 12 110238683 110238693 - IG_D_pseudogene IG_D_pseudogene MGP_CASTEiJ_T0035265.1 MGP_CASTEiJ_G0019291.1 mouse_genomes_project 12 91413127 91510983 + MGP_CASTEiJ_P0035265 Flrt2 protein_coding protein_coding MGP_CASTEiJ_T0035266.1 MGP_CASTEiJ_G0019291.1 mouse_genomes_project 12 91416252 91506877 + MGP_CASTEiJ_P0035266 Flrt2 protein_coding protein_coding MGP_CASTEiJ_T0016551.1 MGP_CASTEiJ_G0014540.1 mouse_genomes_project 12 16094068 16097886 - Gm20535 processed_transcript processed_transcript MGP_CASTEiJ_T0100550.1 MGP_CASTEiJ_G0037463.1 mouse_genomes_project 12 108034309 108034436 + Snora28 snoRNA snoRNA MGP_CASTEiJ_T0034783.1 MGP_CASTEiJ_G0019147.1 mouse_genomes_project 12 70878187 70882622 - MGP_CASTEiJ_P0034783 Akap5 protein_coding protein_coding MGP_CASTEiJ_T0034109.1 MGP_CASTEiJ_G0018915.1 mouse_genomes_project 12 14157740 14175838 + MGP_CASTEiJ_P0034109 E2f6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034110.1 MGP_CASTEiJ_G0018915.1 mouse_genomes_project 12 14157793 14175821 + MGP_CASTEiJ_P0034110 E2f6 protein_coding protein_coding MGP_CASTEiJ_T0034093.1 MGP_CASTEiJ_G0018912.1 mouse_genomes_project 12 13868265 13921113 - MGP_CASTEiJ_P0034093 Lpin1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034094.1 MGP_CASTEiJ_G0018912.1 mouse_genomes_project 12 13869109 13926191 - MGP_CASTEiJ_P0034094 Lpin1 protein_coding protein_coding MGP_CASTEiJ_T0034095.1 MGP_CASTEiJ_G0018912.1 mouse_genomes_project 12 13869109 13926191 - MGP_CASTEiJ_P0034095 Lpin1 protein_coding protein_coding MGP_CASTEiJ_T0010992.1 MGP_CASTEiJ_G0009180.1 mouse_genomes_project 12 25314571 25314890 - Gm23875 misc_RNA misc_RNA MGP_CASTEiJ_T0100539.1 MGP_CASTEiJ_G0037452.1 mouse_genomes_project 12 106121728 106121800 + Gm27604 snoRNA snoRNA MGP_CASTEiJ_T0006252.1 MGP_CASTEiJ_G0005222.1 mouse_genomes_project 12 46257709 46259735 - 1700031P21Rik lincRNA lincRNA MGP_CASTEiJ_T0034601.1 MGP_CASTEiJ_G0019088.1 mouse_genomes_project 12 63614711 63619159 + Klhdc2 protein_coding retained_intron MGP_CASTEiJ_T0034602.1 MGP_CASTEiJ_G0019088.1 mouse_genomes_project 12 63614752 63633305 + MGP_CASTEiJ_P0034602 Klhdc2 protein_coding protein_coding MGP_CASTEiJ_T0034603.1 MGP_CASTEiJ_G0019088.1 mouse_genomes_project 12 63614785 63629440 + Klhdc2 protein_coding retained_intron MGP_CASTEiJ_T0034604.1 MGP_CASTEiJ_G0019088.1 mouse_genomes_project 12 63620444 63629468 + Klhdc2 protein_coding retained_intron MGP_CASTEiJ_T0009649.1 MGP_CASTEiJ_G0007837.1 mouse_genomes_project 12 109518167 109518226 - Mir6941 miRNA miRNA MGP_CASTEiJ_T0035544.1 MGP_CASTEiJ_G0019386.1 mouse_genomes_project 12 104570091 104648095 - MGP_CASTEiJ_P0035544 Ccdc85c protein_coding protein_coding MGP_CASTEiJ_T0009537.1 MGP_CASTEiJ_G0007725.1 mouse_genomes_project 12 23320104 23320208 - Gm25865 miRNA miRNA MGP_CASTEiJ_T0100520.1 MGP_CASTEiJ_G0037433.1 mouse_genomes_project 12 76465625 76465746 + snoRNA snoRNA MGP_CASTEiJ_T0009571.1 MGP_CASTEiJ_G0007759.1 mouse_genomes_project 12 101086021 101086086 - Mir3069 miRNA miRNA MGP_CASTEiJ_T0012473.1 MGP_CASTEiJ_G0010636.1 mouse_genomes_project 12 82015582 82016041 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035398.1 MGP_CASTEiJ_G0019332.1 mouse_genomes_project 12 98698652 98699892 + MGP_CASTEiJ_P0035398 Cox8c protein_coding protein_coding MGP_CASTEiJ_T0034856.1 MGP_CASTEiJ_G0019178.1 mouse_genomes_project 12 74980149 74984187 - MGP_CASTEiJ_P0034856 Zfp36l1 protein_coding protein_coding MGP_CASTEiJ_T0009531.1 MGP_CASTEiJ_G0007719.1 mouse_genomes_project 12 542626 542689 + Gm26050 miRNA miRNA MGP_CASTEiJ_T0012476.1 MGP_CASTEiJ_G0010639.1 mouse_genomes_project 12 83111289 83112151 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011009.1 MGP_CASTEiJ_G0009197.1 mouse_genomes_project 12 105991149 105991246 + Gm27335 misc_RNA misc_RNA MGP_CASTEiJ_T0034495.1 MGP_CASTEiJ_G0019054.1 mouse_genomes_project 12 50473271 50989674 - MGP_CASTEiJ_P0034495 Slc25a21 protein_coding protein_coding MGP_CASTEiJ_T0034496.1 MGP_CASTEiJ_G0019054.1 mouse_genomes_project 12 50474447 50951768 - MGP_CASTEiJ_P0034496 Slc25a21 protein_coding protein_coding MGP_CASTEiJ_T0034497.1 MGP_CASTEiJ_G0019054.1 mouse_genomes_project 12 50489797 50538454 - Slc25a21 protein_coding processed_transcript MGP_CASTEiJ_T0034498.1 MGP_CASTEiJ_G0019054.1 mouse_genomes_project 12 50536605 50759816 - Slc25a21 protein_coding retained_intron MGP_CASTEiJ_T0035315.1 MGP_CASTEiJ_G0019305.1 mouse_genomes_project 12 96064568 96101184 - MGP_CASTEiJ_P0035315 Nrde2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035316.1 MGP_CASTEiJ_G0019305.1 mouse_genomes_project 12 96064576 96101193 - MGP_CASTEiJ_P0035316 Nrde2 protein_coding protein_coding MGP_CASTEiJ_T0098331.1 MGP_CASTEiJ_G0035262.1 mouse_genomes_project 12 79179275 79179888 - pseudogene pseudogene MGP_CASTEiJ_T0012434.1 MGP_CASTEiJ_G0010597.1 mouse_genomes_project 12 5900819 5903196 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035630.1 MGP_CASTEiJ_G0019411.1 mouse_genomes_project 12 107649800 107674069 - MGP_CASTEiJ_P0035630 4930595D18Rik protein_coding protein_coding MGP_CASTEiJ_T0098330.1 MGP_CASTEiJ_G0035261.1 mouse_genomes_project 12 49529564 49530534 + pseudogene pseudogene MGP_CASTEiJ_T0034632.1 MGP_CASTEiJ_G0019098.1 mouse_genomes_project 12 64246134 64319920 + MGP_CASTEiJ_P0034632 Atl1 protein_coding protein_coding MGP_CASTEiJ_T0034796.1 MGP_CASTEiJ_G0019154.1 mouse_genomes_project 12 71161520 71169531 + MGP_CASTEiJ_P0034796 Gm10451 protein_coding protein_coding MGP_CASTEiJ_T0100507.1 MGP_CASTEiJ_G0037420.1 mouse_genomes_project 12 52989049 52989171 + Gm24233 snoRNA snoRNA MGP_CASTEiJ_T0000027.1 MGP_CASTEiJ_G0000021.1 mouse_genomes_project 12 110182169 110182198 - MGP_CASTEiJ_P0000027 Gm37327 IG_D_gene IG_D_gene MGP_CASTEiJ_T0034461.1 MGP_CASTEiJ_G0019038.1 mouse_genomes_project 12 48794669 48859930 - MGP_CASTEiJ_P0034461 2700097O09Rik protein_coding protein_coding MGP_CASTEiJ_T0034462.1 MGP_CASTEiJ_G0019038.1 mouse_genomes_project 12 48794684 48803101 - 2700097O09Rik protein_coding retained_intron MGP_CASTEiJ_T0034463.1 MGP_CASTEiJ_G0019038.1 mouse_genomes_project 12 48802749 48859928 - 2700097O09Rik protein_coding retained_intron MGP_CASTEiJ_T0035197.1 MGP_CASTEiJ_G0019280.1 mouse_genomes_project 12 82818429 82822019 - Alkbh1 protein_coding processed_transcript MGP_CASTEiJ_T0035198.1 MGP_CASTEiJ_G0019280.1 mouse_genomes_project 12 82818758 82838664 - MGP_CASTEiJ_P0035198 Alkbh1 protein_coding protein_coding MGP_CASTEiJ_T0035199.1 MGP_CASTEiJ_G0019280.1 mouse_genomes_project 12 82818780 82838657 - MGP_CASTEiJ_P0035199 Alkbh1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035200.1 MGP_CASTEiJ_G0019280.1 mouse_genomes_project 12 82820660 82838651 - MGP_CASTEiJ_P0035200 Alkbh1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035201.1 MGP_CASTEiJ_G0019280.1 mouse_genomes_project 12 82820660 82838653 - MGP_CASTEiJ_P0035201 Alkbh1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035202.1 MGP_CASTEiJ_G0019280.1 mouse_genomes_project 12 82820663 82838661 - MGP_CASTEiJ_P0035202 Alkbh1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035203.1 MGP_CASTEiJ_G0019280.1 mouse_genomes_project 12 82821391 82838653 - MGP_CASTEiJ_P0035203 Alkbh1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035204.1 MGP_CASTEiJ_G0019280.1 mouse_genomes_project 12 82821702 82831233 - MGP_CASTEiJ_P0035204 Alkbh1 protein_coding protein_coding MGP_CASTEiJ_T0035205.1 MGP_CASTEiJ_G0019280.1 mouse_genomes_project 12 82824046 82836097 - Alkbh1 protein_coding processed_transcript MGP_CASTEiJ_T0035206.1 MGP_CASTEiJ_G0019280.1 mouse_genomes_project 12 82825858 82838658 - MGP_CASTEiJ_P0035206 Alkbh1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035207.1 MGP_CASTEiJ_G0019280.1 mouse_genomes_project 12 82825869 82838664 - Alkbh1 protein_coding retained_intron MGP_CASTEiJ_T0035208.1 MGP_CASTEiJ_G0019280.1 mouse_genomes_project 12 82837061 82838842 - Alkbh1 protein_coding retained_intron MGP_CASTEiJ_T0035209.1 MGP_CASTEiJ_G0019280.1 mouse_genomes_project 12 82838325 82838743 - MGP_CASTEiJ_P0035209 Alkbh1 protein_coding protein_coding MGP_CASTEiJ_T0012471.1 MGP_CASTEiJ_G0010634.1 mouse_genomes_project 12 76559313 76559739 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099300.1 MGP_CASTEiJ_G0036213.1 mouse_genomes_project 12 46261212 46261319 + Gm24859 snRNA snRNA MGP_CASTEiJ_T0010989.1 MGP_CASTEiJ_G0009177.1 mouse_genomes_project 12 1300754 1301040 + Gm22343 misc_RNA misc_RNA MGP_CASTEiJ_T0000241.1 MGP_CASTEiJ_G0000190.1 mouse_genomes_project 12 111200507 111200800 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0035592.1 MGP_CASTEiJ_G0019401.1 mouse_genomes_project 12 107055243 107110852 + MGP_CASTEiJ_P0035592 Dync1h1 protein_coding protein_coding MGP_CASTEiJ_T0035593.1 MGP_CASTEiJ_G0019401.1 mouse_genomes_project 12 107083642 107085991 + Dync1h1 protein_coding retained_intron MGP_CASTEiJ_T0035594.1 MGP_CASTEiJ_G0019401.1 mouse_genomes_project 12 107098226 107102230 + MGP_CASTEiJ_P0035594 Dync1h1 protein_coding protein_coding MGP_CASTEiJ_T0035595.1 MGP_CASTEiJ_G0019401.1 mouse_genomes_project 12 107100467 107101406 + Dync1h1 protein_coding retained_intron MGP_CASTEiJ_T0035596.1 MGP_CASTEiJ_G0019401.1 mouse_genomes_project 12 107103154 107103902 + Dync1h1 protein_coding retained_intron MGP_CASTEiJ_T0035597.1 MGP_CASTEiJ_G0019401.1 mouse_genomes_project 12 107104576 107105396 + Dync1h1 protein_coding retained_intron MGP_CASTEiJ_T0035598.1 MGP_CASTEiJ_G0019401.1 mouse_genomes_project 12 107104859 107105427 + Dync1h1 protein_coding retained_intron MGP_CASTEiJ_T0035599.1 MGP_CASTEiJ_G0019401.1 mouse_genomes_project 12 107107113 107108783 + Dync1h1 protein_coding retained_intron MGP_CASTEiJ_T0000122.1 MGP_CASTEiJ_G0000092.1 mouse_genomes_project 12 111760397 111949991 - MGP_CASTEiJ_P0000122 IG_V_gene IG_V_gene MGP_CASTEiJ_T0003307.1 MGP_CASTEiJ_G0003046.1 mouse_genomes_project 12 97885729 97887829 - Gm16339 antisense antisense MGP_CASTEiJ_T0006223.1 MGP_CASTEiJ_G0005199.1 mouse_genomes_project 12 165225 179815 - Gm26520 lincRNA lincRNA MGP_CASTEiJ_T0009601.1 MGP_CASTEiJ_G0007789.1 mouse_genomes_project 12 106176901 106176950 - Mir299b miRNA miRNA MGP_CASTEiJ_T0035245.1 MGP_CASTEiJ_G0019288.1 mouse_genomes_project 12 86971807 87088664 + MGP_CASTEiJ_P0035245 Tshr protein_coding protein_coding MGP_CASTEiJ_T0035246.1 MGP_CASTEiJ_G0019288.1 mouse_genomes_project 12 86971813 87070694 + MGP_CASTEiJ_P0035246 Tshr protein_coding protein_coding MGP_CASTEiJ_T0035247.1 MGP_CASTEiJ_G0019288.1 mouse_genomes_project 12 87086210 87087701 + MGP_CASTEiJ_P0035247 Tshr protein_coding protein_coding MGP_CASTEiJ_T0034281.1 MGP_CASTEiJ_G0018971.1 mouse_genomes_project 12 24890773 24993477 - MGP_CASTEiJ_P0034281 Prkar2b protein_coding protein_coding MGP_CASTEiJ_T0034282.1 MGP_CASTEiJ_G0018971.1 mouse_genomes_project 12 24892511 24993522 - MGP_CASTEiJ_P0034282 Prkar2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0035376.1 MGP_CASTEiJ_G0019321.1 mouse_genomes_project 12 98165401 98204024 - MGP_CASTEiJ_P0035376 Lgmn protein_coding unknown_likely_coding MGP_CASTEiJ_T0035377.1 MGP_CASTEiJ_G0019321.1 mouse_genomes_project 12 98167444 98191488 - MGP_CASTEiJ_P0035377 Lgmn protein_coding protein_coding MGP_CASTEiJ_T0035378.1 MGP_CASTEiJ_G0019321.1 mouse_genomes_project 12 98167458 98204190 - MGP_CASTEiJ_P0035378 Lgmn protein_coding protein_coding MGP_CASTEiJ_T0035379.1 MGP_CASTEiJ_G0019321.1 mouse_genomes_project 12 98173492 98180498 - Lgmn protein_coding retained_intron MGP_CASTEiJ_T0009534.1 MGP_CASTEiJ_G0007722.1 mouse_genomes_project 12 14739562 14739645 + Mir3066 miRNA miRNA MGP_CASTEiJ_T0010998.1 MGP_CASTEiJ_G0009186.1 mouse_genomes_project 12 64282776 64283052 + Gm22058 misc_RNA misc_RNA MGP_CASTEiJ_T0003286.1 MGP_CASTEiJ_G0003028.1 mouse_genomes_project 12 51441633 51469391 - 4921518K17Rik antisense antisense MGP_CASTEiJ_T0000242.1 MGP_CASTEiJ_G0000191.1 mouse_genomes_project 12 111270896 111271334 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0010994.1 MGP_CASTEiJ_G0009182.1 mouse_genomes_project 12 40381542 40381791 - Gm25051 misc_RNA misc_RNA MGP_CASTEiJ_T0000112.1 MGP_CASTEiJ_G0000086.1 mouse_genomes_project 12 111531998 111532432 + MGP_CASTEiJ_P0000112 Ighv1-31 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000113.1 MGP_CASTEiJ_G0000086.1 mouse_genomes_project 12 111532138 111532432 + MGP_CASTEiJ_P0000113 Ighv1-31 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034167.1 MGP_CASTEiJ_G0018933.1 mouse_genomes_project 12 17282118 17293592 + MGP_CASTEiJ_P0034167 Klf11 protein_coding protein_coding MGP_CASTEiJ_T0034168.1 MGP_CASTEiJ_G0018933.1 mouse_genomes_project 12 17282643 17285874 + MGP_CASTEiJ_P0034168 Klf11 protein_coding protein_coding MGP_CASTEiJ_T0034169.1 MGP_CASTEiJ_G0018933.1 mouse_genomes_project 12 17282643 17284545 + MGP_CASTEiJ_P0034169 Klf11 protein_coding protein_coding MGP_CASTEiJ_T0034170.1 MGP_CASTEiJ_G0018933.1 mouse_genomes_project 12 17282900 17285869 + MGP_CASTEiJ_P0034170 Klf11 protein_coding protein_coding MGP_CASTEiJ_T0006278.1 MGP_CASTEiJ_G0005244.1 mouse_genomes_project 12 95460295 95518641 + Gm26839 lincRNA lincRNA MGP_CASTEiJ_T0035806.1 MGP_CASTEiJ_G0019471.1 mouse_genomes_project 12 115062623 115070575 + MGP_CASTEiJ_P0035806 Sp8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009599.1 MGP_CASTEiJ_G0007787.1 mouse_genomes_project 12 106176431 106176513 + Mir411 miRNA miRNA MGP_CASTEiJ_T0034272.1 MGP_CASTEiJ_G0018970.1 mouse_genomes_project 12 24851183 24882857 - MGP_CASTEiJ_P0034272 Hbp1 protein_coding protein_coding MGP_CASTEiJ_T0034273.1 MGP_CASTEiJ_G0018970.1 mouse_genomes_project 12 24854314 24882545 - MGP_CASTEiJ_P0034273 Hbp1 protein_coding protein_coding MGP_CASTEiJ_T0034274.1 MGP_CASTEiJ_G0018970.1 mouse_genomes_project 12 24855731 24866730 - MGP_CASTEiJ_P0034274 Hbp1 protein_coding protein_coding MGP_CASTEiJ_T0034275.1 MGP_CASTEiJ_G0018970.1 mouse_genomes_project 12 24855842 24859720 - Hbp1 protein_coding retained_intron MGP_CASTEiJ_T0034276.1 MGP_CASTEiJ_G0018970.1 mouse_genomes_project 12 24857752 24881931 - MGP_CASTEiJ_P0034276 Hbp1 protein_coding protein_coding MGP_CASTEiJ_T0034277.1 MGP_CASTEiJ_G0018970.1 mouse_genomes_project 12 24859258 24882492 - MGP_CASTEiJ_P0034277 Hbp1 protein_coding protein_coding MGP_CASTEiJ_T0034278.1 MGP_CASTEiJ_G0018970.1 mouse_genomes_project 12 24861368 24882543 - MGP_CASTEiJ_P0034278 Hbp1 protein_coding protein_coding MGP_CASTEiJ_T0034279.1 MGP_CASTEiJ_G0018970.1 mouse_genomes_project 12 24861954 24882532 - MGP_CASTEiJ_P0034279 Hbp1 protein_coding protein_coding MGP_CASTEiJ_T0034280.1 MGP_CASTEiJ_G0018970.1 mouse_genomes_project 12 24864650 24882556 - Hbp1 protein_coding retained_intron MGP_CASTEiJ_T0034753.1 MGP_CASTEiJ_G0019140.1 mouse_genomes_project 12 69925989 70017936 + MGP_CASTEiJ_P0034753 Rhoj protein_coding protein_coding MGP_CASTEiJ_T0034754.1 MGP_CASTEiJ_G0019140.1 mouse_genomes_project 12 69925989 70021441 + MGP_CASTEiJ_P0034754 Rhoj protein_coding protein_coding MGP_CASTEiJ_T0034755.1 MGP_CASTEiJ_G0019140.1 mouse_genomes_project 12 69925989 70015797 + MGP_CASTEiJ_P0034755 Rhoj protein_coding protein_coding MGP_CASTEiJ_T0034756.1 MGP_CASTEiJ_G0019140.1 mouse_genomes_project 12 69926348 70002493 + Rhoj protein_coding retained_intron MGP_CASTEiJ_T0034757.1 MGP_CASTEiJ_G0019140.1 mouse_genomes_project 12 69926556 70020192 + MGP_CASTEiJ_P0034757 Rhoj protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034430.1 MGP_CASTEiJ_G0019025.1 mouse_genomes_project 12 45639435 45661605 - MGP_CASTEiJ_P0034430 Dtd2 protein_coding protein_coding MGP_CASTEiJ_T0034431.1 MGP_CASTEiJ_G0019025.1 mouse_genomes_project 12 45650092 45661605 - MGP_CASTEiJ_P0034431 Dtd2 protein_coding protein_coding MGP_CASTEiJ_T0000246.1 MGP_CASTEiJ_G0000195.1 mouse_genomes_project 12 111493714 111494126 + IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0009595.1 MGP_CASTEiJ_G0007783.1 mouse_genomes_project 12 106073182 106073269 + Gm23912 miRNA miRNA MGP_CASTEiJ_T0009576.1 MGP_CASTEiJ_G0007764.1 mouse_genomes_project 12 105991351 105991431 + Mir1906-2 miRNA miRNA MGP_CASTEiJ_T0099292.1 MGP_CASTEiJ_G0036205.1 mouse_genomes_project 12 10738198 10738305 - Gm24142 snRNA snRNA MGP_CASTEiJ_T0009579.1 MGP_CASTEiJ_G0007767.1 mouse_genomes_project 12 106033274 106033357 + Mir493 miRNA miRNA MGP_CASTEiJ_T0009569.1 MGP_CASTEiJ_G0007757.1 mouse_genomes_project 12 98472368 98472461 - Mir1936 miRNA miRNA MGP_CASTEiJ_T0006239.1 MGP_CASTEiJ_G0005211.1 mouse_genomes_project 12 21271204 21275382 - 1700022F17Rik lincRNA lincRNA MGP_CASTEiJ_T0035117.1 MGP_CASTEiJ_G0019258.1 mouse_genomes_project 12 81046947 81056006 - MGP_CASTEiJ_P0035117 0610007P14Rik protein_coding protein_coding MGP_CASTEiJ_T0035118.1 MGP_CASTEiJ_G0019258.1 mouse_genomes_project 12 81047158 81055996 - 0610007P14Rik protein_coding processed_transcript MGP_CASTEiJ_T0035119.1 MGP_CASTEiJ_G0019258.1 mouse_genomes_project 12 81050582 81056028 - 0610007P14Rik protein_coding retained_intron MGP_CASTEiJ_T0035120.1 MGP_CASTEiJ_G0019258.1 mouse_genomes_project 12 81050821 81053736 - 0610007P14Rik protein_coding retained_intron MGP_CASTEiJ_T0035121.1 MGP_CASTEiJ_G0019258.1 mouse_genomes_project 12 81051028 81056034 - MGP_CASTEiJ_P0035121 0610007P14Rik protein_coding protein_coding MGP_CASTEiJ_T0035144.1 MGP_CASTEiJ_G0019262.1 mouse_genomes_project 12 81494153 81548123 + MGP_CASTEiJ_P0035144 Gpatch2l protein_coding protein_coding MGP_CASTEiJ_T0035786.1 MGP_CASTEiJ_G0019463.1 mouse_genomes_project 12 112308177 112366667 - MGP_CASTEiJ_P0035786 Wdr60 protein_coding protein_coding MGP_CASTEiJ_T0034872.1 MGP_CASTEiJ_G0019188.1 mouse_genomes_project 12 75870681 75876423 + protein_coding retained_intron MGP_CASTEiJ_T0034873.1 MGP_CASTEiJ_G0019188.1 mouse_genomes_project 12 75870693 75876423 + protein_coding retained_intron MGP_CASTEiJ_T0034874.1 MGP_CASTEiJ_G0019188.1 mouse_genomes_project 12 75870695 75872009 + protein_coding processed_transcript MGP_CASTEiJ_T0034875.1 MGP_CASTEiJ_G0019188.1 mouse_genomes_project 12 75870709 75873675 + protein_coding processed_transcript MGP_CASTEiJ_T0034876.1 MGP_CASTEiJ_G0019188.1 mouse_genomes_project 12 75870731 75872699 + MGP_CASTEiJ_P0034876 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034877.1 MGP_CASTEiJ_G0019188.1 mouse_genomes_project 12 75870740 75872141 + protein_coding processed_transcript MGP_CASTEiJ_T0034878.1 MGP_CASTEiJ_G0019188.1 mouse_genomes_project 12 75871536 75876417 + protein_coding retained_intron MGP_CASTEiJ_T0000118.1 MGP_CASTEiJ_G0000089.1 mouse_genomes_project 12 111659382 111659676 - MGP_CASTEiJ_P0000118 Ighv1-49 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000119.1 MGP_CASTEiJ_G0000089.1 mouse_genomes_project 12 111659382 111659679 - MGP_CASTEiJ_P0000119 Ighv1-49 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000124.1 MGP_CASTEiJ_G0000094.1 mouse_genomes_project 12 112030940 112070676 - MGP_CASTEiJ_P0000124 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034200.1 MGP_CASTEiJ_G0018944.1 mouse_genomes_project 12 21356434 21383445 - MGP_CASTEiJ_P0034200 Allc protein_coding unknown_likely_coding MGP_CASTEiJ_T0003293.1 MGP_CASTEiJ_G0003033.1 mouse_genomes_project 12 74828335 74828640 + Gm28056 antisense antisense MGP_CASTEiJ_T0000032.1 MGP_CASTEiJ_G0000026.1 mouse_genomes_project 12 110155344 110155444 - IG_D_pseudogene IG_D_pseudogene MGP_CASTEiJ_T0034407.1 MGP_CASTEiJ_G0019013.1 mouse_genomes_project 12 40224765 40365969 - MGP_CASTEiJ_P0034407 Nova1 protein_coding protein_coding MGP_CASTEiJ_T0034268.1 MGP_CASTEiJ_G0018969.1 mouse_genomes_project 12 24620105 24627168 - MGP_CASTEiJ_P0034268 Gpr22 protein_coding protein_coding MGP_CASTEiJ_T0034269.1 MGP_CASTEiJ_G0018969.1 mouse_genomes_project 12 24621950 24627189 - MGP_CASTEiJ_P0034269 Gpr22 protein_coding protein_coding MGP_CASTEiJ_T0034270.1 MGP_CASTEiJ_G0018969.1 mouse_genomes_project 12 24622687 24627175 - MGP_CASTEiJ_P0034270 Gpr22 protein_coding protein_coding MGP_CASTEiJ_T0009591.1 MGP_CASTEiJ_G0007779.1 mouse_genomes_project 12 106048112 106048192 - Mir3071 miRNA miRNA MGP_CASTEiJ_T0006264.1 MGP_CASTEiJ_G0005230.1 mouse_genomes_project 12 74994132 75006532 - 2310015A10Rik lincRNA lincRNA MGP_CASTEiJ_T0006230.1 MGP_CASTEiJ_G0005205.1 mouse_genomes_project 12 8630092 8637697 + 4930511A02Rik lincRNA lincRNA MGP_CASTEiJ_T0034073.1 MGP_CASTEiJ_G0018899.1 mouse_genomes_project 12 7600946 7606713 + MGP_CASTEiJ_P0034073 Rdh14 protein_coding protein_coding MGP_CASTEiJ_T0009617.1 MGP_CASTEiJ_G0007805.1 mouse_genomes_project 12 106189631 106189713 + Mir376b miRNA miRNA MGP_CASTEiJ_T0034658.1 MGP_CASTEiJ_G0019106.1 mouse_genomes_project 12 65221495 65299915 + MGP_CASTEiJ_P0034658 Frmd6 protein_coding protein_coding MGP_CASTEiJ_T0000306.1 MGP_CASTEiJ_G0000255.1 mouse_genomes_project 12 53130922 53130991 + mt-Ti Mt_tRNA Mt_tRNA MGP_CASTEiJ_T0035088.1 MGP_CASTEiJ_G0019245.1 mouse_genomes_project 12 80318218 80335586 - MGP_CASTEiJ_P0035088 Rps6kl1 protein_coding protein_coding MGP_CASTEiJ_T0034880.1 MGP_CASTEiJ_G0019190.1 mouse_genomes_project 12 75959204 76129551 + MGP_CASTEiJ_P0034880 Smoc1 protein_coding protein_coding MGP_CASTEiJ_T0034881.1 MGP_CASTEiJ_G0019190.1 mouse_genomes_project 12 75959224 76129547 + MGP_CASTEiJ_P0034881 Smoc1 protein_coding protein_coding MGP_CASTEiJ_T0034882.1 MGP_CASTEiJ_G0019190.1 mouse_genomes_project 12 75959224 76129547 + MGP_CASTEiJ_P0034882 Smoc1 protein_coding protein_coding MGP_CASTEiJ_T0009631.1 MGP_CASTEiJ_G0007819.1 mouse_genomes_project 12 106201833 106201915 + Mir453 miRNA miRNA MGP_CASTEiJ_T0000830.1 MGP_CASTEiJ_G0000770.1 mouse_genomes_project 12 99878358 99882701 - TEC TEC MGP_CASTEiJ_T0035547.1 MGP_CASTEiJ_G0019389.1 mouse_genomes_project 12 104763269 104913753 + Eml1 protein_coding retained_intron MGP_CASTEiJ_T0035548.1 MGP_CASTEiJ_G0019389.1 mouse_genomes_project 12 104802947 104945732 + MGP_CASTEiJ_P0035548 Eml1 protein_coding protein_coding MGP_CASTEiJ_T0035549.1 MGP_CASTEiJ_G0019389.1 mouse_genomes_project 12 104816690 104944882 + MGP_CASTEiJ_P0035549 Eml1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035550.1 MGP_CASTEiJ_G0019389.1 mouse_genomes_project 12 104816807 104946927 + MGP_CASTEiJ_P0035550 Eml1 protein_coding protein_coding MGP_CASTEiJ_T0035551.1 MGP_CASTEiJ_G0019389.1 mouse_genomes_project 12 104868437 104946918 + Eml1 protein_coding processed_transcript MGP_CASTEiJ_T0035552.1 MGP_CASTEiJ_G0019389.1 mouse_genomes_project 12 104942081 104944777 + Eml1 protein_coding processed_transcript MGP_CASTEiJ_T0035553.1 MGP_CASTEiJ_G0019389.1 mouse_genomes_project 12 104942139 104946971 + Eml1 protein_coding processed_transcript MGP_CASTEiJ_T0034326.1 MGP_CASTEiJ_G0018987.1 mouse_genomes_project 12 29081173 29109900 + MGP_CASTEiJ_P0034326 Agr3 protein_coding protein_coding MGP_CASTEiJ_T0034327.1 MGP_CASTEiJ_G0018987.1 mouse_genomes_project 12 29081175 29083769 + MGP_CASTEiJ_P0034327 Agr3 protein_coding protein_coding MGP_CASTEiJ_T0003277.1 MGP_CASTEiJ_G0003021.1 mouse_genomes_project 12 33414888 33416828 + Arl4aos antisense antisense MGP_CASTEiJ_T0034992.1 MGP_CASTEiJ_G0019217.1 mouse_genomes_project 12 79136280 79144132 + MGP_CASTEiJ_P0034992 Acot3 protein_coding protein_coding MGP_CASTEiJ_T0034993.1 MGP_CASTEiJ_G0019217.1 mouse_genomes_project 12 79136287 79144132 + MGP_CASTEiJ_P0034993 Acot3 protein_coding protein_coding MGP_CASTEiJ_T0000131.1 MGP_CASTEiJ_G0000099.1 mouse_genomes_project 12 112070274 112070708 - MGP_CASTEiJ_P0000131 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034830.1 MGP_CASTEiJ_G0019167.1 mouse_genomes_project 12 73657361 73683192 + MGP_CASTEiJ_P0034830 Eif2s1 protein_coding protein_coding MGP_CASTEiJ_T0034367.1 MGP_CASTEiJ_G0019001.1 mouse_genomes_project 12 33443960 33533527 - MGP_CASTEiJ_P0034367 Scin protein_coding protein_coding MGP_CASTEiJ_T0034368.1 MGP_CASTEiJ_G0019001.1 mouse_genomes_project 12 33443964 33533572 - MGP_CASTEiJ_P0034368 Scin protein_coding protein_coding MGP_CASTEiJ_T0000251.1 MGP_CASTEiJ_G0000200.1 mouse_genomes_project 12 111569855 111570290 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0035425.1 MGP_CASTEiJ_G0019338.1 mouse_genomes_project 12 99243126 99244138 - MGP_CASTEiJ_P0035425 9330161L09Rik protein_coding protein_coding MGP_CASTEiJ_T0034467.1 MGP_CASTEiJ_G0019042.1 mouse_genomes_project 12 48922961 48945192 - MGP_CASTEiJ_P0034467 Ppp2r3c protein_coding protein_coding MGP_CASTEiJ_T0034838.1 MGP_CASTEiJ_G0019170.1 mouse_genomes_project 12 73839692 73893832 + MGP_CASTEiJ_P0034838 Plekhh1 protein_coding protein_coding MGP_CASTEiJ_T0034839.1 MGP_CASTEiJ_G0019170.1 mouse_genomes_project 12 73845044 73890817 + MGP_CASTEiJ_P0034839 Plekhh1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035382.1 MGP_CASTEiJ_G0019323.1 mouse_genomes_project 12 98334433 98345952 + MGP_CASTEiJ_P0035382 Chga protein_coding protein_coding MGP_CASTEiJ_T0035383.1 MGP_CASTEiJ_G0019323.1 mouse_genomes_project 12 98334614 98345958 + MGP_CASTEiJ_P0035383 Chga protein_coding unknown_likely_coding MGP_CASTEiJ_T0035212.1 MGP_CASTEiJ_G0019282.1 mouse_genomes_project 12 82844761 82866623 - MGP_CASTEiJ_P0035212 Snw1 protein_coding protein_coding MGP_CASTEiJ_T0000826.1 MGP_CASTEiJ_G0000766.1 mouse_genomes_project 12 80281222 80282917 - TEC TEC MGP_CASTEiJ_T0012448.1 MGP_CASTEiJ_G0010611.1 mouse_genomes_project 12 48706349 48707516 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012478.1 MGP_CASTEiJ_G0010641.1 mouse_genomes_project 12 87028046 87028810 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035758.1 MGP_CASTEiJ_G0019456.1 mouse_genomes_project 12 109762859 109772032 + Crip1 protein_coding processed_transcript MGP_CASTEiJ_T0035759.1 MGP_CASTEiJ_G0019456.1 mouse_genomes_project 12 109766861 109771999 + MGP_CASTEiJ_P0035759 Crip1 protein_coding protein_coding MGP_CASTEiJ_T0035760.1 MGP_CASTEiJ_G0019456.1 mouse_genomes_project 12 109770164 109772030 + MGP_CASTEiJ_P0035760 Crip1 protein_coding protein_coding MGP_CASTEiJ_T0035761.1 MGP_CASTEiJ_G0019456.1 mouse_genomes_project 12 109770205 109772032 + MGP_CASTEiJ_P0035761 Crip1 protein_coding protein_coding MGP_CASTEiJ_T0035762.1 MGP_CASTEiJ_G0019456.1 mouse_genomes_project 12 109770223 109772032 + Crip1 protein_coding retained_intron MGP_CASTEiJ_T0035763.1 MGP_CASTEiJ_G0019456.1 mouse_genomes_project 12 109770233 109772032 + Crip1 protein_coding retained_intron MGP_CASTEiJ_T0006276.1 MGP_CASTEiJ_G0005242.1 mouse_genomes_project 12 86341616 86554828 - 4930544I03Rik lincRNA lincRNA MGP_CASTEiJ_T0034919.1 MGP_CASTEiJ_G0019202.1 mouse_genomes_project 12 77481606 77482784 - MGP_CASTEiJ_P0034919 Gm5435 protein_coding protein_coding MGP_CASTEiJ_T0000074.1 MGP_CASTEiJ_G0000060.1 mouse_genomes_project 12 110843252 110843793 - MGP_CASTEiJ_P0000074 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000076.1 MGP_CASTEiJ_G0000060.1 mouse_genomes_project 12 110843252 110843719 - MGP_CASTEiJ_P0000076 IG_V_gene IG_V_gene MGP_CASTEiJ_T0003284.1 MGP_CASTEiJ_G0003026.1 mouse_genomes_project 12 50444341 50448167 - Gm15524 antisense antisense MGP_CASTEiJ_T0034065.1 MGP_CASTEiJ_G0018895.1 mouse_genomes_project 12 6157298 6163733 + MGP_CASTEiJ_P0034065 Ttc32 protein_coding protein_coding MGP_CASTEiJ_T0034250.1 MGP_CASTEiJ_G0018963.1 mouse_genomes_project 12 24270697 24336760 + MGP_CASTEiJ_P0034250 Slc26a3 protein_coding protein_coding MGP_CASTEiJ_T0034251.1 MGP_CASTEiJ_G0018963.1 mouse_genomes_project 12 24323984 24360135 + MGP_CASTEiJ_P0034251 Slc26a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034252.1 MGP_CASTEiJ_G0018963.1 mouse_genomes_project 12 24323986 24360557 + MGP_CASTEiJ_P0034252 Slc26a3 protein_coding protein_coding MGP_CASTEiJ_T0034253.1 MGP_CASTEiJ_G0018963.1 mouse_genomes_project 12 24323986 24338650 + MGP_CASTEiJ_P0034253 Slc26a3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034254.1 MGP_CASTEiJ_G0018963.1 mouse_genomes_project 12 24324000 24338668 + Slc26a3 protein_coding retained_intron MGP_CASTEiJ_T0034255.1 MGP_CASTEiJ_G0018963.1 mouse_genomes_project 12 24333218 24340854 + Slc26a3 protein_coding retained_intron MGP_CASTEiJ_T0034256.1 MGP_CASTEiJ_G0018963.1 mouse_genomes_project 12 24357153 24358262 + MGP_CASTEiJ_P0034256 Slc26a3 protein_coding protein_coding MGP_CASTEiJ_T0009548.1 MGP_CASTEiJ_G0007736.1 mouse_genomes_project 12 63467922 63467992 + miRNA miRNA MGP_CASTEiJ_T0099039.1 MGP_CASTEiJ_G0035956.1 mouse_genomes_project 12 67440861 67463562 + Gm26709 sense_overlapping sense_overlapping MGP_CASTEiJ_T0034561.1 MGP_CASTEiJ_G0019072.1 mouse_genomes_project 12 59065515 59089332 - MGP_CASTEiJ_P0034561 Klhl28 protein_coding protein_coding MGP_CASTEiJ_T0035460.1 MGP_CASTEiJ_G0019350.1 mouse_genomes_project 12 99967895 99979901 + MGP_CASTEiJ_P0035460 Serpina5 protein_coding protein_coding MGP_CASTEiJ_T0012435.1 MGP_CASTEiJ_G0010598.1 mouse_genomes_project 12 5900819 5903200 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000008.1 MGP_CASTEiJ_G0000006.1 mouse_genomes_project 12 109911653 109914702 - MGP_CASTEiJ_P0000008 Ighe IG_C_gene IG_C_gene MGP_CASTEiJ_T0034341.1 MGP_CASTEiJ_G0018995.1 mouse_genomes_project 12 29556369 29869054 + MGP_CASTEiJ_P0034341 Ispd protein_coding protein_coding MGP_CASTEiJ_T0034119.1 MGP_CASTEiJ_G0018918.1 mouse_genomes_project 12 14360115 14370371 - MGP_CASTEiJ_P0034119 2410004P03Rik protein_coding protein_coding MGP_CASTEiJ_T0034120.1 MGP_CASTEiJ_G0018918.1 mouse_genomes_project 12 14363135 14370197 - MGP_CASTEiJ_P0034120 2410004P03Rik protein_coding protein_coding MGP_CASTEiJ_T0034121.1 MGP_CASTEiJ_G0018918.1 mouse_genomes_project 12 14364685 14370146 - MGP_CASTEiJ_P0034121 2410004P03Rik protein_coding protein_coding MGP_CASTEiJ_T0009567.1 MGP_CASTEiJ_G0007755.1 mouse_genomes_project 12 95911012 95911090 - Gm23291 miRNA miRNA MGP_CASTEiJ_T0035701.1 MGP_CASTEiJ_G0019432.1 mouse_genomes_project 12 108649738 108670798 + MGP_CASTEiJ_P0035701 Aspg protein_coding protein_coding MGP_CASTEiJ_T0034986.1 MGP_CASTEiJ_G0019212.1 mouse_genomes_project 12 79018542 79019208 - MGP_CASTEiJ_P0034986 Gm26571 protein_coding protein_coding MGP_CASTEiJ_T0009642.1 MGP_CASTEiJ_G0007830.1 mouse_genomes_project 12 106770941 106771023 - Mir1247 miRNA miRNA MGP_CASTEiJ_T0003285.1 MGP_CASTEiJ_G0003027.1 mouse_genomes_project 12 51282775 51291680 - Gm16246 antisense antisense MGP_CASTEiJ_T0009585.1 MGP_CASTEiJ_G0007773.1 mouse_genomes_project 12 106041627 106041716 + Mir3070b miRNA miRNA MGP_CASTEiJ_T0010996.1 MGP_CASTEiJ_G0009184.1 mouse_genomes_project 12 55870733 55871046 + Gm23213 misc_RNA misc_RNA MGP_CASTEiJ_T0099289.1 MGP_CASTEiJ_G0036202.1 mouse_genomes_project 12 1947986 1948089 - Gm23167 snRNA snRNA MGP_CASTEiJ_T0000219.1 MGP_CASTEiJ_G0000168.1 mouse_genomes_project 12 110486665 110487614 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0034394.1 MGP_CASTEiJ_G0019010.1 mouse_genomes_project 12 37759088 37809730 + MGP_CASTEiJ_P0034394 Pnpla8 protein_coding protein_coding MGP_CASTEiJ_T0034395.1 MGP_CASTEiJ_G0019010.1 mouse_genomes_project 12 37768494 37777108 + MGP_CASTEiJ_P0034395 Pnpla8 protein_coding protein_coding MGP_CASTEiJ_T0034396.1 MGP_CASTEiJ_G0019010.1 mouse_genomes_project 12 37776790 37805539 + MGP_CASTEiJ_P0034396 Pnpla8 protein_coding protein_coding MGP_CASTEiJ_T0034397.1 MGP_CASTEiJ_G0019010.1 mouse_genomes_project 12 37790489 37805040 + MGP_CASTEiJ_P0034397 Pnpla8 protein_coding protein_coding MGP_CASTEiJ_T0099306.1 MGP_CASTEiJ_G0036219.1 mouse_genomes_project 12 49624138 49624241 - Gm22296 snRNA snRNA MGP_CASTEiJ_T0098482.1 MGP_CASTEiJ_G0035413.1 mouse_genomes_project 12 61762600 61762719 - n-R5s60 rRNA rRNA MGP_CASTEiJ_T0012466.1 MGP_CASTEiJ_G0010629.1 mouse_genomes_project 12 71508169 71508473 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035314.1 MGP_CASTEiJ_G0019304.1 mouse_genomes_project 12 96049726 96062510 + MGP_CASTEiJ_P0035314 Psmc1 protein_coding protein_coding MGP_CASTEiJ_T0035047.1 MGP_CASTEiJ_G0019230.1 mouse_genomes_project 12 79552194 79576342 - MGP_CASTEiJ_P0035047 Aldh6a1 protein_coding protein_coding MGP_CASTEiJ_T0010991.1 MGP_CASTEiJ_G0009179.1 mouse_genomes_project 12 15075142 15075448 - Gm25925 misc_RNA misc_RNA MGP_CASTEiJ_T0000028.1 MGP_CASTEiJ_G0000022.1 mouse_genomes_project 12 110182406 110182416 - MGP_CASTEiJ_P0000028 Ighd5-5 IG_D_gene IG_D_gene MGP_CASTEiJ_T0100505.1 MGP_CASTEiJ_G0037418.1 mouse_genomes_project 12 49972251 49972381 - Gm25917 snoRNA snoRNA MGP_CASTEiJ_T0003292.1 MGP_CASTEiJ_G0003032.1 mouse_genomes_project 12 68797476 68810995 - Gm29587 antisense antisense MGP_CASTEiJ_T0003270.1 MGP_CASTEiJ_G0003015.1 mouse_genomes_project 12 228975 252427 - 1110002L01Rik antisense antisense MGP_CASTEiJ_T0003271.1 MGP_CASTEiJ_G0003015.1 mouse_genomes_project 12 229492 252460 - 1110002L01Rik antisense antisense MGP_CASTEiJ_T0100490.1 MGP_CASTEiJ_G0037403.1 mouse_genomes_project 12 16132129 16132262 + Gm25821 snoRNA snoRNA MGP_CASTEiJ_T0034593.1 MGP_CASTEiJ_G0019083.1 mouse_genomes_project 12 63497162 63499776 + MGP_CASTEiJ_P0034593 Mgat2 protein_coding protein_coding MGP_CASTEiJ_T0000026.1 MGP_CASTEiJ_G0000020.1 mouse_genomes_project 12 110161102 110161202 - MGP_CASTEiJ_P0000026 Ighd5-8 IG_D_gene IG_D_gene MGP_CASTEiJ_T0000015.1 MGP_CASTEiJ_G0000011.1 mouse_genomes_project 12 110093907 110099539 - MGP_CASTEiJ_P0000015 Ighm IG_C_gene IG_C_gene MGP_CASTEiJ_T0000016.1 MGP_CASTEiJ_G0000011.1 mouse_genomes_project 12 110097549 110099539 - MGP_CASTEiJ_P0000016 Ighm IG_C_gene IG_C_gene MGP_CASTEiJ_T0035773.1 MGP_CASTEiJ_G0000011.1 mouse_genomes_project 12 110094175 110099465 - MGP_CASTEiJ_P0035773 Ighm IG_C_gene unknown_likely_coding MGP_CASTEiJ_T0035052.1 MGP_CASTEiJ_G0019234.1 mouse_genomes_project 12 79781894 79793238 + MGP_CASTEiJ_P0035052 Vrtn protein_coding protein_coding MGP_CASTEiJ_T0035053.1 MGP_CASTEiJ_G0019234.1 mouse_genomes_project 12 79783430 79793238 + MGP_CASTEiJ_P0035053 Vrtn protein_coding protein_coding MGP_CASTEiJ_T0035054.1 MGP_CASTEiJ_G0019234.1 mouse_genomes_project 12 79783771 79793238 + MGP_CASTEiJ_P0035054 Vrtn protein_coding protein_coding MGP_CASTEiJ_T0035231.1 MGP_CASTEiJ_G0019287.1 mouse_genomes_project 12 86584702 86954092 - MGP_CASTEiJ_P0035231 Cep128 protein_coding protein_coding MGP_CASTEiJ_T0035232.1 MGP_CASTEiJ_G0019287.1 mouse_genomes_project 12 86584702 86832506 - MGP_CASTEiJ_P0035232 Cep128 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035233.1 MGP_CASTEiJ_G0019287.1 mouse_genomes_project 12 86585585 86647452 - Cep128 protein_coding processed_transcript MGP_CASTEiJ_T0035234.1 MGP_CASTEiJ_G0019287.1 mouse_genomes_project 12 86585587 86615952 - Cep128 protein_coding processed_transcript MGP_CASTEiJ_T0035235.1 MGP_CASTEiJ_G0019287.1 mouse_genomes_project 12 86585587 86615952 - Cep128 protein_coding processed_transcript MGP_CASTEiJ_T0035236.1 MGP_CASTEiJ_G0019287.1 mouse_genomes_project 12 86585810 86757092 - Cep128 protein_coding processed_transcript MGP_CASTEiJ_T0035237.1 MGP_CASTEiJ_G0019287.1 mouse_genomes_project 12 86608304 86757145 - Cep128 protein_coding processed_transcript MGP_CASTEiJ_T0035238.1 MGP_CASTEiJ_G0019287.1 mouse_genomes_project 12 86787655 86825603 - MGP_CASTEiJ_P0035238 Cep128 protein_coding protein_coding MGP_CASTEiJ_T0035239.1 MGP_CASTEiJ_G0019287.1 mouse_genomes_project 12 86825448 86953995 - MGP_CASTEiJ_P0035239 Cep128 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035240.1 MGP_CASTEiJ_G0019287.1 mouse_genomes_project 12 86851398 86954092 - Cep128 protein_coding retained_intron MGP_CASTEiJ_T0035241.1 MGP_CASTEiJ_G0019287.1 mouse_genomes_project 12 86884233 86899402 - Cep128 protein_coding processed_transcript MGP_CASTEiJ_T0035242.1 MGP_CASTEiJ_G0019287.1 mouse_genomes_project 12 86905958 86954042 - Cep128 protein_coding retained_intron MGP_CASTEiJ_T0035243.1 MGP_CASTEiJ_G0019287.1 mouse_genomes_project 12 86907858 86954092 - Cep128 protein_coding processed_transcript MGP_CASTEiJ_T0035244.1 MGP_CASTEiJ_G0019287.1 mouse_genomes_project 12 86931293 86954036 - Cep128 protein_coding retained_intron MGP_CASTEiJ_T0100522.1 MGP_CASTEiJ_G0037435.1 mouse_genomes_project 12 77770454 77770590 - Gm22149 snoRNA snoRNA MGP_CASTEiJ_T0035807.1 MGP_CASTEiJ_G0019472.1 mouse_genomes_project 12 115083796 115189839 - MGP_CASTEiJ_P0035807 Abcb5 protein_coding protein_coding MGP_CASTEiJ_T0035808.1 MGP_CASTEiJ_G0019472.1 mouse_genomes_project 12 115103531 115108135 - Abcb5 protein_coding retained_intron MGP_CASTEiJ_T0035809.1 MGP_CASTEiJ_G0019472.1 mouse_genomes_project 12 115104004 115145239 - Abcb5 protein_coding processed_transcript MGP_CASTEiJ_T0034808.1 MGP_CASTEiJ_G0019159.1 mouse_genomes_project 12 71507855 71511060 - MGP_CASTEiJ_P0034808 protein_coding protein_coding MGP_CASTEiJ_T0100492.1 MGP_CASTEiJ_G0037405.1 mouse_genomes_project 12 20409052 20409177 + Gm24326 snoRNA snoRNA MGP_CASTEiJ_T0006300.1 MGP_CASTEiJ_G0005262.1 mouse_genomes_project 12 104041929 104054375 - 4930465M20Rik lincRNA lincRNA MGP_CASTEiJ_T0006301.1 MGP_CASTEiJ_G0005262.1 mouse_genomes_project 12 104047545 104054383 - 4930465M20Rik lincRNA lincRNA MGP_CASTEiJ_T0012487.1 MGP_CASTEiJ_G0010650.1 mouse_genomes_project 12 99460063 99460741 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034207.1 MGP_CASTEiJ_G0018949.1 mouse_genomes_project 12 21498053 21559423 - MGP_CASTEiJ_P0034207 Trappc12 protein_coding protein_coding MGP_CASTEiJ_T0034208.1 MGP_CASTEiJ_G0018949.1 mouse_genomes_project 12 21498053 21559482 - MGP_CASTEiJ_P0034208 Trappc12 protein_coding protein_coding MGP_CASTEiJ_T0034209.1 MGP_CASTEiJ_G0018949.1 mouse_genomes_project 12 21498666 21559379 - MGP_CASTEiJ_P0034209 Trappc12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034210.1 MGP_CASTEiJ_G0018949.1 mouse_genomes_project 12 21517109 21559482 - MGP_CASTEiJ_P0034210 Trappc12 protein_coding protein_coding MGP_CASTEiJ_T0009536.1 MGP_CASTEiJ_G0007724.1 mouse_genomes_project 12 21486715 21486780 + Mir6937 miRNA miRNA MGP_CASTEiJ_T0035189.1 MGP_CASTEiJ_G0019278.1 mouse_genomes_project 12 82653830 82678959 - MGP_CASTEiJ_P0035189 Ism2 protein_coding protein_coding MGP_CASTEiJ_T0035190.1 MGP_CASTEiJ_G0019278.1 mouse_genomes_project 12 82654875 82662315 - MGP_CASTEiJ_P0035190 Ism2 protein_coding protein_coding MGP_CASTEiJ_T0035191.1 MGP_CASTEiJ_G0019278.1 mouse_genomes_project 12 82657610 82662251 - Ism2 protein_coding processed_transcript MGP_CASTEiJ_T0000225.1 MGP_CASTEiJ_G0000174.1 mouse_genomes_project 12 110604101 110604484 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0000036.1 MGP_CASTEiJ_G0000030.1 mouse_genomes_project 12 110106478 110106532 - MGP_CASTEiJ_P0000036 Ighj4 IG_J_gene IG_J_gene MGP_CASTEiJ_T0000232.1 MGP_CASTEiJ_G0000181.1 mouse_genomes_project 12 110923317 110923750 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0034264.1 MGP_CASTEiJ_G0018966.1 mouse_genomes_project 12 24503258 24546831 - MGP_CASTEiJ_P0034264 Bcap29 protein_coding protein_coding MGP_CASTEiJ_T0034265.1 MGP_CASTEiJ_G0018966.1 mouse_genomes_project 12 24503258 24546770 - MGP_CASTEiJ_P0034265 Bcap29 protein_coding protein_coding MGP_CASTEiJ_T0011002.1 MGP_CASTEiJ_G0009190.1 mouse_genomes_project 12 81944618 81944703 + Gm27993 misc_RNA misc_RNA MGP_CASTEiJ_T0035169.1 MGP_CASTEiJ_G0019268.1 mouse_genomes_project 12 82319125 82324414 - MGP_CASTEiJ_P0035169 Zdhhc22 protein_coding protein_coding MGP_CASTEiJ_T0100510.1 MGP_CASTEiJ_G0037423.1 mouse_genomes_project 12 58868885 58869016 + Gm24066 snoRNA snoRNA MGP_CASTEiJ_T0099313.1 MGP_CASTEiJ_G0036226.1 mouse_genomes_project 12 63460744 63460848 - Gm24499 snRNA snRNA MGP_CASTEiJ_T0006240.1 MGP_CASTEiJ_G0005212.1 mouse_genomes_project 12 23276984 23330989 - 2310016D03Rik lincRNA lincRNA MGP_CASTEiJ_T0035380.1 MGP_CASTEiJ_G0019322.1 mouse_genomes_project 12 98237145 98267157 + MGP_CASTEiJ_P0035380 Golga5 protein_coding protein_coding MGP_CASTEiJ_T0035381.1 MGP_CASTEiJ_G0019322.1 mouse_genomes_project 12 98237921 98267157 + MGP_CASTEiJ_P0035381 Golga5 protein_coding protein_coding MGP_CASTEiJ_T0035731.1 MGP_CASTEiJ_G0019447.1 mouse_genomes_project 12 109506170 109527195 - MGP_CASTEiJ_P0035731 Jag2 protein_coding protein_coding MGP_CASTEiJ_T0034138.1 MGP_CASTEiJ_G0018923.1 mouse_genomes_project 12 14962481 14972598 + MGP_CASTEiJ_P0034138 Odc1 protein_coding protein_coding MGP_CASTEiJ_T0035181.1 MGP_CASTEiJ_G0019273.1 mouse_genomes_project 12 82524658 82561669 - MGP_CASTEiJ_P0035181 Tmed8 protein_coding protein_coding MGP_CASTEiJ_T0006226.1 MGP_CASTEiJ_G0005201.1 mouse_genomes_project 12 4391569 4399828 - 1700101O22Rik lincRNA lincRNA MGP_CASTEiJ_T0034490.1 MGP_CASTEiJ_G0019052.1 mouse_genomes_project 12 50360884 50362788 - MGP_CASTEiJ_P0034490 Nkx2-9 protein_coding protein_coding MGP_CASTEiJ_T0034709.1 MGP_CASTEiJ_G0019122.1 mouse_genomes_project 12 67080655 67089867 - MGP_CASTEiJ_P0034709 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0034607.1 MGP_CASTEiJ_G0019090.1 mouse_genomes_project 12 63704337 63704961 - MGP_CASTEiJ_P0034607 Gm9887 protein_coding protein_coding MGP_CASTEiJ_T0033975.1 MGP_CASTEiJ_G0018865.1 mouse_genomes_project 12 830298 918723 - MGP_CASTEiJ_P0033975 Efr3b protein_coding protein_coding MGP_CASTEiJ_T0033976.1 MGP_CASTEiJ_G0018865.1 mouse_genomes_project 12 830792 918545 - MGP_CASTEiJ_P0033976 Efr3b protein_coding unknown_likely_coding MGP_CASTEiJ_T0000087.1 MGP_CASTEiJ_G0000068.1 mouse_genomes_project 12 110957383 110957685 - MGP_CASTEiJ_P0000087 Ighv13-2 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000088.1 MGP_CASTEiJ_G0000068.1 mouse_genomes_project 12 110957383 110957843 - MGP_CASTEiJ_P0000088 Ighv13-2 IG_V_gene IG_V_gene MGP_CASTEiJ_T0033998.1 MGP_CASTEiJ_G0018873.1 mouse_genomes_project 12 1627707 1628229 - MGP_CASTEiJ_P0033998 Gm17541 protein_coding protein_coding MGP_CASTEiJ_T0035654.1 MGP_CASTEiJ_G0019420.1 mouse_genomes_project 12 108069606 108154982 + MGP_CASTEiJ_P0035654 Mark3 protein_coding protein_coding MGP_CASTEiJ_T0035655.1 MGP_CASTEiJ_G0019420.1 mouse_genomes_project 12 108069606 108154982 + MGP_CASTEiJ_P0035655 Mark3 protein_coding protein_coding MGP_CASTEiJ_T0035656.1 MGP_CASTEiJ_G0019420.1 mouse_genomes_project 12 108111908 108154978 + MGP_CASTEiJ_P0035656 Mark3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099311.1 MGP_CASTEiJ_G0036224.1 mouse_genomes_project 12 59689452 59689555 + Gm25599 snRNA snRNA MGP_CASTEiJ_T0012452.1 MGP_CASTEiJ_G0010615.1 mouse_genomes_project 12 51080517 51080983 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006282.1 MGP_CASTEiJ_G0005248.1 mouse_genomes_project 12 97073242 97079528 + D130020L05Rik lincRNA lincRNA MGP_CASTEiJ_T0035620.1 MGP_CASTEiJ_G0019408.1 mouse_genomes_project 12 107361514 107452621 + MGP_CASTEiJ_P0035620 Tecpr2 protein_coding protein_coding MGP_CASTEiJ_T0035621.1 MGP_CASTEiJ_G0019408.1 mouse_genomes_project 12 107361514 107452623 + MGP_CASTEiJ_P0035621 Tecpr2 protein_coding protein_coding MGP_CASTEiJ_T0000105.1 MGP_CASTEiJ_G0000082.1 mouse_genomes_project 12 111286647 111287080 - MGP_CASTEiJ_P0000105 Ighv1-11 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034576.1 MGP_CASTEiJ_G0019079.1 mouse_genomes_project 12 60656019 61098744 - MGP_CASTEiJ_P0034576 Mdga2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034577.1 MGP_CASTEiJ_G0019079.1 mouse_genomes_project 12 60656019 61098754 - MGP_CASTEiJ_P0034577 Mdga2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034578.1 MGP_CASTEiJ_G0019079.1 mouse_genomes_project 12 60659529 61482556 - MGP_CASTEiJ_P0034578 Mdga2 protein_coding protein_coding MGP_CASTEiJ_T0034579.1 MGP_CASTEiJ_G0019079.1 mouse_genomes_project 12 60660596 60661019 - MGP_CASTEiJ_P0034579 Mdga2 protein_coding protein_coding MGP_CASTEiJ_T0034580.1 MGP_CASTEiJ_G0019079.1 mouse_genomes_project 12 60661145 61481240 - MGP_CASTEiJ_P0034580 Mdga2 protein_coding protein_coding MGP_CASTEiJ_T0034581.1 MGP_CASTEiJ_G0019079.1 mouse_genomes_project 12 60661428 61481221 - MGP_CASTEiJ_P0034581 Mdga2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034582.1 MGP_CASTEiJ_G0019079.1 mouse_genomes_project 12 60671084 60676499 - Mdga2 protein_coding retained_intron MGP_CASTEiJ_T0034583.1 MGP_CASTEiJ_G0019079.1 mouse_genomes_project 12 60824326 60834667 - Mdga2 protein_coding processed_transcript MGP_CASTEiJ_T0034584.1 MGP_CASTEiJ_G0019079.1 mouse_genomes_project 12 60899843 61048241 - Mdga2 protein_coding processed_transcript MGP_CASTEiJ_T0034585.1 MGP_CASTEiJ_G0019079.1 mouse_genomes_project 12 61456394 61482549 - Mdga2 protein_coding processed_transcript MGP_CASTEiJ_T0034586.1 MGP_CASTEiJ_G0019079.1 mouse_genomes_project 12 61472549 61482388 - Mdga2 protein_coding processed_transcript MGP_CASTEiJ_T0099297.1 MGP_CASTEiJ_G0036210.1 mouse_genomes_project 12 28595738 28595845 + Gm26071 snRNA snRNA MGP_CASTEiJ_T0034610.1 MGP_CASTEiJ_G0019092.1 mouse_genomes_project 12 63905199 63912815 - MGP_CASTEiJ_P0034610 Vcpkmt protein_coding protein_coding MGP_CASTEiJ_T0099328.1 MGP_CASTEiJ_G0036241.1 mouse_genomes_project 12 96733935 96734041 - Gm25801 snRNA snRNA MGP_CASTEiJ_T0035277.1 MGP_CASTEiJ_G0019296.1 mouse_genomes_project 12 94516109 94576436 - MGP_CASTEiJ_P0035277 Ptpn21 protein_coding protein_coding MGP_CASTEiJ_T0035278.1 MGP_CASTEiJ_G0019296.1 mouse_genomes_project 12 94516109 94579179 - MGP_CASTEiJ_P0035278 Ptpn21 protein_coding protein_coding MGP_CASTEiJ_T0009623.1 MGP_CASTEiJ_G0007811.1 mouse_genomes_project 12 106194288 106194403 - Gm44322 miRNA miRNA MGP_CASTEiJ_T0012501.1 MGP_CASTEiJ_G0010664.1 mouse_genomes_project 12 110875756 110876407 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035510.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101903177 101954023 + MGP_CASTEiJ_P0035510 Papola protein_coding protein_coding MGP_CASTEiJ_T0035511.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101903184 101928354 + Papola protein_coding processed_transcript MGP_CASTEiJ_T0035512.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101903189 101956349 + MGP_CASTEiJ_P0035512 Papola protein_coding protein_coding MGP_CASTEiJ_T0035513.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101903206 101932892 + Papola protein_coding retained_intron MGP_CASTEiJ_T0035514.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101903211 101956076 + MGP_CASTEiJ_P0035514 Papola protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035515.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101903213 101928516 + Papola protein_coding processed_transcript MGP_CASTEiJ_T0035516.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101903216 101958165 + MGP_CASTEiJ_P0035516 Papola protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035517.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101903218 101925375 + MGP_CASTEiJ_P0035517 Papola protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035518.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101903230 101928516 + MGP_CASTEiJ_P0035518 Papola protein_coding protein_coding MGP_CASTEiJ_T0035519.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101903345 101956491 + MGP_CASTEiJ_P0035519 Papola protein_coding protein_coding MGP_CASTEiJ_T0035520.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101903380 101956078 + MGP_CASTEiJ_P0035520 Papola protein_coding protein_coding MGP_CASTEiJ_T0035521.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101918411 101930238 + Papola protein_coding retained_intron MGP_CASTEiJ_T0035522.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101927398 101939270 + MGP_CASTEiJ_P0035522 Papola protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035523.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101928130 101928516 + Papola protein_coding retained_intron MGP_CASTEiJ_T0035524.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101931125 101956328 + MGP_CASTEiJ_P0035524 Papola protein_coding protein_coding MGP_CASTEiJ_T0035525.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101931176 101948340 + MGP_CASTEiJ_P0035525 Papola protein_coding protein_coding MGP_CASTEiJ_T0035526.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101936654 101937605 + Papola protein_coding retained_intron MGP_CASTEiJ_T0035527.1 MGP_CASTEiJ_G0019380.1 mouse_genomes_project 12 101948160 101954629 + MGP_CASTEiJ_P0035527 Papola protein_coding protein_coding MGP_CASTEiJ_T0034950.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78676300 78693633 + MGP_CASTEiJ_P0034950 Rbm25 protein_coding protein_coding MGP_CASTEiJ_T0034951.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78676300 78723723 + MGP_CASTEiJ_P0034951 Rbm25 protein_coding protein_coding MGP_CASTEiJ_T0034952.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78677083 78729418 + MGP_CASTEiJ_P0034952 Rbm25 protein_coding protein_coding MGP_CASTEiJ_T0034953.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78677084 78698696 + MGP_CASTEiJ_P0034953 Rbm25 protein_coding protein_coding MGP_CASTEiJ_T0034954.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78677088 78693631 + MGP_CASTEiJ_P0034954 Rbm25 protein_coding protein_coding MGP_CASTEiJ_T0034955.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78677122 78708683 + MGP_CASTEiJ_P0034955 Rbm25 protein_coding protein_coding MGP_CASTEiJ_T0034956.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78677137 78688558 + MGP_CASTEiJ_P0034956 Rbm25 protein_coding protein_coding MGP_CASTEiJ_T0034957.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78677157 78713217 + MGP_CASTEiJ_P0034957 Rbm25 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034958.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78680731 78685256 + Rbm25 protein_coding retained_intron MGP_CASTEiJ_T0034959.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78688413 78698715 + Rbm25 protein_coding retained_intron MGP_CASTEiJ_T0034960.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78688498 78728312 + MGP_CASTEiJ_P0034960 Rbm25 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034961.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78688558 78717734 + Rbm25 protein_coding retained_intron MGP_CASTEiJ_T0034962.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78693582 78699075 + Rbm25 protein_coding processed_transcript MGP_CASTEiJ_T0034963.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78695513 78699432 + Rbm25 protein_coding retained_intron MGP_CASTEiJ_T0034964.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78707744 78708803 + Rbm25 protein_coding retained_intron MGP_CASTEiJ_T0034965.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78712191 78713217 + Rbm25 protein_coding processed_transcript MGP_CASTEiJ_T0034966.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78723830 78725419 + Rbm25 protein_coding processed_transcript MGP_CASTEiJ_T0034967.1 MGP_CASTEiJ_G0019207.1 mouse_genomes_project 12 78724158 78727187 + Rbm25 protein_coding retained_intron MGP_CASTEiJ_T0034450.1 MGP_CASTEiJ_G0019035.1 mouse_genomes_project 12 48588560 48592617 - MGP_CASTEiJ_P0034450 Cfl2 protein_coding protein_coding MGP_CASTEiJ_T0035416.1 MGP_CASTEiJ_G0019336.1 mouse_genomes_project 12 99152314 99189912 - MGP_CASTEiJ_P0035416 Asb2 protein_coding protein_coding MGP_CASTEiJ_T0035417.1 MGP_CASTEiJ_G0019336.1 mouse_genomes_project 12 99152318 99167089 - Asb2 protein_coding retained_intron MGP_CASTEiJ_T0035418.1 MGP_CASTEiJ_G0019336.1 mouse_genomes_project 12 99152318 99169857 - MGP_CASTEiJ_P0035418 Asb2 protein_coding protein_coding MGP_CASTEiJ_T0035419.1 MGP_CASTEiJ_G0019336.1 mouse_genomes_project 12 99166373 99168217 - Asb2 protein_coding processed_transcript MGP_CASTEiJ_T0006285.1 MGP_CASTEiJ_G0005251.1 mouse_genomes_project 12 101408853 101457053 + lincRNA lincRNA MGP_CASTEiJ_T0006286.1 MGP_CASTEiJ_G0005251.1 mouse_genomes_project 12 101409252 101457051 + lincRNA lincRNA MGP_CASTEiJ_T0100527.1 MGP_CASTEiJ_G0037440.1 mouse_genomes_project 12 106085904 106085979 + Gm24564 snoRNA snoRNA MGP_CASTEiJ_T0009611.1 MGP_CASTEiJ_G0007799.1 mouse_genomes_project 12 106183328 106183413 + Mir666 miRNA miRNA MGP_CASTEiJ_T0035342.1 MGP_CASTEiJ_G0019311.1 mouse_genomes_project 12 96881992 97013903 - MGP_CASTEiJ_P0035342 Ccdc88c protein_coding protein_coding MGP_CASTEiJ_T0035343.1 MGP_CASTEiJ_G0019311.1 mouse_genomes_project 12 96881992 97013903 - MGP_CASTEiJ_P0035343 Ccdc88c protein_coding protein_coding MGP_CASTEiJ_T0100501.1 MGP_CASTEiJ_G0037414.1 mouse_genomes_project 12 38609983 38610114 + Gm24731 snoRNA snoRNA MGP_CASTEiJ_T0100547.1 MGP_CASTEiJ_G0037460.1 mouse_genomes_project 12 106151502 106151574 + Gm25854 snoRNA snoRNA MGP_CASTEiJ_T0098473.1 MGP_CASTEiJ_G0035404.1 mouse_genomes_project 12 9286727 9286858 + Gm26171 rRNA rRNA MGP_CASTEiJ_T0009644.1 MGP_CASTEiJ_G0007832.1 mouse_genomes_project 12 108652327 108652412 + Mir3073a miRNA miRNA MGP_CASTEiJ_T0034349.1 MGP_CASTEiJ_G0018999.1 mouse_genomes_project 12 32076108 32166535 + MGP_CASTEiJ_P0034349 Etv1 protein_coding protein_coding MGP_CASTEiJ_T0034350.1 MGP_CASTEiJ_G0018999.1 mouse_genomes_project 12 32076812 32168496 + MGP_CASTEiJ_P0034350 Etv1 protein_coding protein_coding MGP_CASTEiJ_T0034351.1 MGP_CASTEiJ_G0018999.1 mouse_genomes_project 12 32077014 32166067 + MGP_CASTEiJ_P0034351 Etv1 protein_coding protein_coding MGP_CASTEiJ_T0034352.1 MGP_CASTEiJ_G0018999.1 mouse_genomes_project 12 32077049 32078540 + MGP_CASTEiJ_P0034352 Etv1 protein_coding protein_coding MGP_CASTEiJ_T0034353.1 MGP_CASTEiJ_G0018999.1 mouse_genomes_project 12 32077079 32133584 + MGP_CASTEiJ_P0034353 Etv1 protein_coding protein_coding MGP_CASTEiJ_T0034354.1 MGP_CASTEiJ_G0018999.1 mouse_genomes_project 12 32077577 32166064 + MGP_CASTEiJ_P0034354 Etv1 protein_coding protein_coding MGP_CASTEiJ_T0034355.1 MGP_CASTEiJ_G0018999.1 mouse_genomes_project 12 32077842 32167583 + Etv1 protein_coding retained_intron MGP_CASTEiJ_T0034356.1 MGP_CASTEiJ_G0018999.1 mouse_genomes_project 12 32077858 32133496 + MGP_CASTEiJ_P0034356 Etv1 protein_coding protein_coding MGP_CASTEiJ_T0034357.1 MGP_CASTEiJ_G0018999.1 mouse_genomes_project 12 32080195 32166462 + MGP_CASTEiJ_P0034357 Etv1 protein_coding protein_coding MGP_CASTEiJ_T0034358.1 MGP_CASTEiJ_G0018999.1 mouse_genomes_project 12 32080206 32166247 + MGP_CASTEiJ_P0034358 Etv1 protein_coding protein_coding MGP_CASTEiJ_T0034359.1 MGP_CASTEiJ_G0018999.1 mouse_genomes_project 12 32080234 32168484 + MGP_CASTEiJ_P0034359 Etv1 protein_coding protein_coding MGP_CASTEiJ_T0034360.1 MGP_CASTEiJ_G0018999.1 mouse_genomes_project 12 32123017 32129543 + MGP_CASTEiJ_P0034360 Etv1 protein_coding protein_coding MGP_CASTEiJ_T0034361.1 MGP_CASTEiJ_G0018999.1 mouse_genomes_project 12 32135719 32166004 + Etv1 protein_coding processed_transcript MGP_CASTEiJ_T0000116.1 MGP_CASTEiJ_G0000088.1 mouse_genomes_project 12 111625406 111625840 - MGP_CASTEiJ_P0000116 Ighv8-4 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000117.1 MGP_CASTEiJ_G0000088.1 mouse_genomes_project 12 111625406 111625700 - MGP_CASTEiJ_P0000117 Ighv8-4 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034066.1 MGP_CASTEiJ_G0018896.1 mouse_genomes_project 12 6597400 6598377 + MGP_CASTEiJ_P0034066 protein_coding protein_coding MGP_CASTEiJ_T0100545.1 MGP_CASTEiJ_G0037458.1 mouse_genomes_project 12 106147554 106147630 + Gm25856 snoRNA snoRNA MGP_CASTEiJ_T0035660.1 MGP_CASTEiJ_G0019423.1 mouse_genomes_project 12 108217669 108221427 - MGP_CASTEiJ_P0035660 Bag5 protein_coding protein_coding MGP_CASTEiJ_T0035661.1 MGP_CASTEiJ_G0019423.1 mouse_genomes_project 12 108218068 108221097 - MGP_CASTEiJ_P0035661 Bag5 protein_coding protein_coding MGP_CASTEiJ_T0035662.1 MGP_CASTEiJ_G0019423.1 mouse_genomes_project 12 108219373 108221123 - MGP_CASTEiJ_P0035662 Bag5 protein_coding protein_coding MGP_CASTEiJ_T0035663.1 MGP_CASTEiJ_G0019423.1 mouse_genomes_project 12 108219439 108221123 - MGP_CASTEiJ_P0035663 Bag5 protein_coding protein_coding MGP_CASTEiJ_T0035188.1 MGP_CASTEiJ_G0019277.1 mouse_genomes_project 12 82641963 82649203 + MGP_CASTEiJ_P0035188 Ahsa1 protein_coding protein_coding MGP_CASTEiJ_T0099309.1 MGP_CASTEiJ_G0036222.1 mouse_genomes_project 12 55936230 55936335 + Gm24750 snRNA snRNA MGP_CASTEiJ_T0035637.1 MGP_CASTEiJ_G0019414.1 mouse_genomes_project 12 107783995 107852492 - MGP_CASTEiJ_P0035637 Cdc42bpb protein_coding unknown_likely_coding MGP_CASTEiJ_T0035638.1 MGP_CASTEiJ_G0019414.1 mouse_genomes_project 12 107784140 107839618 - MGP_CASTEiJ_P0035638 Cdc42bpb protein_coding protein_coding MGP_CASTEiJ_T0099302.1 MGP_CASTEiJ_G0036215.1 mouse_genomes_project 12 47954292 47954441 + Gm22220 snRNA snRNA MGP_CASTEiJ_T0035056.1 MGP_CASTEiJ_G0019236.1 mouse_genomes_project 12 79912589 79934603 - MGP_CASTEiJ_P0035056 Npc2 protein_coding protein_coding MGP_CASTEiJ_T0035722.1 MGP_CASTEiJ_G0019441.1 mouse_genomes_project 12 109303034 109327448 + MGP_CASTEiJ_P0035722 Cep170b protein_coding protein_coding MGP_CASTEiJ_T0035723.1 MGP_CASTEiJ_G0019441.1 mouse_genomes_project 12 109303054 109327444 + MGP_CASTEiJ_P0035723 Cep170b protein_coding protein_coding MGP_CASTEiJ_T0035724.1 MGP_CASTEiJ_G0019441.1 mouse_genomes_project 12 109303054 109327444 + MGP_CASTEiJ_P0035724 Cep170b protein_coding protein_coding MGP_CASTEiJ_T0035508.1 MGP_CASTEiJ_G0019378.1 mouse_genomes_project 12 101789006 101809506 + MGP_CASTEiJ_P0035508 Gskip protein_coding protein_coding MGP_CASTEiJ_T0035467.1 MGP_CASTEiJ_G0019355.1 mouse_genomes_project 12 100148592 100154552 + MGP_CASTEiJ_P0035467 Serpina3f protein_coding protein_coding MGP_CASTEiJ_T0035468.1 MGP_CASTEiJ_G0019355.1 mouse_genomes_project 12 100148592 100154546 + MGP_CASTEiJ_P0035468 Serpina3f protein_coding protein_coding MGP_CASTEiJ_T0035470.1 MGP_CASTEiJ_G0019355.1 mouse_genomes_project 12 100148681 100154546 + MGP_CASTEiJ_P0035470 Serpina3f protein_coding protein_coding MGP_CASTEiJ_T0034785.1 MGP_CASTEiJ_G0019149.1 mouse_genomes_project 12 70956299 71026717 + MGP_CASTEiJ_P0034785 Mthfd1 protein_coding protein_coding MGP_CASTEiJ_T0034786.1 MGP_CASTEiJ_G0019149.1 mouse_genomes_project 12 70956571 71026655 + MGP_CASTEiJ_P0034786 Mthfd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100549.1 MGP_CASTEiJ_G0037462.1 mouse_genomes_project 12 106154156 106154221 + Gm25224 snoRNA snoRNA MGP_CASTEiJ_T0012485.1 MGP_CASTEiJ_G0010648.1 mouse_genomes_project 12 97596327 97596647 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009653.1 MGP_CASTEiJ_G0007841.1 mouse_genomes_project 12 112347628 112347684 - Gm23190 miRNA miRNA MGP_CASTEiJ_T0100512.1 MGP_CASTEiJ_G0037425.1 mouse_genomes_project 12 59558835 59558960 - Gm26015 snoRNA snoRNA MGP_CASTEiJ_T0034137.1 MGP_CASTEiJ_G0018922.1 mouse_genomes_project 12 14732604 14822787 + MGP_CASTEiJ_P0034137 Nol10 protein_coding protein_coding MGP_CASTEiJ_T0035384.1 MGP_CASTEiJ_G0019324.1 mouse_genomes_project 12 98349467 98493715 - MGP_CASTEiJ_P0035384 Itpk1 protein_coding protein_coding MGP_CASTEiJ_T0035385.1 MGP_CASTEiJ_G0019324.1 mouse_genomes_project 12 98352420 98493598 - MGP_CASTEiJ_P0035385 Itpk1 protein_coding protein_coding MGP_CASTEiJ_T0035386.1 MGP_CASTEiJ_G0019324.1 mouse_genomes_project 12 98366494 98376266 - Itpk1 protein_coding processed_transcript MGP_CASTEiJ_T0035387.1 MGP_CASTEiJ_G0019324.1 mouse_genomes_project 12 98370138 98425395 - MGP_CASTEiJ_P0035387 Itpk1 protein_coding protein_coding MGP_CASTEiJ_T0035388.1 MGP_CASTEiJ_G0019324.1 mouse_genomes_project 12 98407136 98493696 - MGP_CASTEiJ_P0035388 Itpk1 protein_coding protein_coding MGP_CASTEiJ_T0035366.1 MGP_CASTEiJ_G0019319.1 mouse_genomes_project 12 97886655 98031872 + MGP_CASTEiJ_P0035366 Slc24a4 protein_coding protein_coding MGP_CASTEiJ_T0035367.1 MGP_CASTEiJ_G0019319.1 mouse_genomes_project 12 97887096 98031530 + MGP_CASTEiJ_P0035367 Slc24a4 protein_coding protein_coding MGP_CASTEiJ_T0035368.1 MGP_CASTEiJ_G0019319.1 mouse_genomes_project 12 97887312 98031278 + MGP_CASTEiJ_P0035368 Slc24a4 protein_coding protein_coding MGP_CASTEiJ_T0034660.1 MGP_CASTEiJ_G0019108.1 mouse_genomes_project 12 65370060 65392483 + Psma3 protein_coding retained_intron MGP_CASTEiJ_T0034661.1 MGP_CASTEiJ_G0019108.1 mouse_genomes_project 12 65370060 65392892 + MGP_CASTEiJ_P0034661 Psma3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034662.1 MGP_CASTEiJ_G0019108.1 mouse_genomes_project 12 65370082 65392486 + MGP_CASTEiJ_P0034662 Psma3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034663.1 MGP_CASTEiJ_G0019108.1 mouse_genomes_project 12 65370097 65374872 + Psma3 protein_coding retained_intron MGP_CASTEiJ_T0034664.1 MGP_CASTEiJ_G0019108.1 mouse_genomes_project 12 65370104 65392457 + MGP_CASTEiJ_P0034664 Psma3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034665.1 MGP_CASTEiJ_G0019108.1 mouse_genomes_project 12 65370108 65381057 + Psma3 protein_coding retained_intron MGP_CASTEiJ_T0034666.1 MGP_CASTEiJ_G0019108.1 mouse_genomes_project 12 65370136 65393231 + MGP_CASTEiJ_P0034666 Psma3 protein_coding protein_coding MGP_CASTEiJ_T0098476.1 MGP_CASTEiJ_G0035407.1 mouse_genomes_project 12 20856663 20856801 - Gm25923 rRNA rRNA MGP_CASTEiJ_T0033931.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 409410 629529 + MGP_CASTEiJ_P0033931 Dtnb protein_coding protein_coding MGP_CASTEiJ_T0033932.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 409420 629133 + MGP_CASTEiJ_P0033932 Dtnb protein_coding protein_coding MGP_CASTEiJ_T0033933.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 409446 629094 + MGP_CASTEiJ_P0033933 Dtnb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033934.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 409462 629133 + MGP_CASTEiJ_P0033934 Dtnb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033935.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 409463 487667 + MGP_CASTEiJ_P0033935 Dtnb protein_coding protein_coding MGP_CASTEiJ_T0033936.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 409464 565503 + Dtnb protein_coding retained_intron MGP_CASTEiJ_T0033937.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 409482 629130 + MGP_CASTEiJ_P0033937 Dtnb protein_coding protein_coding MGP_CASTEiJ_T0033938.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 409492 628877 + MGP_CASTEiJ_P0033938 Dtnb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033939.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 409494 629128 + MGP_CASTEiJ_P0033939 Dtnb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033940.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 409495 502796 + Dtnb protein_coding processed_transcript MGP_CASTEiJ_T0033941.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 409499 629130 + MGP_CASTEiJ_P0033941 Dtnb protein_coding protein_coding MGP_CASTEiJ_T0033942.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 409504 629130 + MGP_CASTEiJ_P0033942 Dtnb protein_coding protein_coding MGP_CASTEiJ_T0033943.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 409552 629240 + MGP_CASTEiJ_P0033943 Dtnb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033944.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 409565 436748 + MGP_CASTEiJ_P0033944 Dtnb protein_coding protein_coding MGP_CASTEiJ_T0033945.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 409649 597349 + MGP_CASTEiJ_P0033945 Dtnb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0033946.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 410013 629126 + MGP_CASTEiJ_P0033946 Dtnb protein_coding protein_coding MGP_CASTEiJ_T0033947.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 428304 629130 + MGP_CASTEiJ_P0033947 Dtnb protein_coding protein_coding MGP_CASTEiJ_T0033948.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 460993 631548 + MGP_CASTEiJ_P0033948 Dtnb protein_coding unknown_likely_coding MGP_CASTEiJ_T0033949.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 471078 629130 + MGP_CASTEiJ_P0033949 Dtnb protein_coding protein_coding MGP_CASTEiJ_T0033950.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 527294 563382 + Dtnb protein_coding retained_intron MGP_CASTEiJ_T0033951.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 563953 594911 + Dtnb protein_coding processed_transcript MGP_CASTEiJ_T0033952.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 594725 628877 + Dtnb protein_coding retained_intron MGP_CASTEiJ_T0033953.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 594979 629133 + MGP_CASTEiJ_P0033953 Dtnb protein_coding protein_coding MGP_CASTEiJ_T0033954.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 622085 629133 + Dtnb protein_coding processed_transcript MGP_CASTEiJ_T0033955.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 622295 629132 + Dtnb protein_coding retained_intron MGP_CASTEiJ_T0033956.1 MGP_CASTEiJ_G0018861.1 mouse_genomes_project 12 627300 629133 + Dtnb protein_coding retained_intron MGP_CASTEiJ_T0000066.1 MGP_CASTEiJ_G0000054.1 mouse_genomes_project 12 110616997 110617436 - MGP_CASTEiJ_P0000066 Ighv2-7 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034184.1 MGP_CASTEiJ_G0018936.1 mouse_genomes_project 12 17490389 17631979 + MGP_CASTEiJ_P0034184 Mboat2 protein_coding protein_coding MGP_CASTEiJ_T0034185.1 MGP_CASTEiJ_G0018936.1 mouse_genomes_project 12 17490389 17631979 + MGP_CASTEiJ_P0034185 Mboat2 protein_coding protein_coding MGP_CASTEiJ_T0035567.1 MGP_CASTEiJ_G0019395.1 mouse_genomes_project 12 105288086 105322283 - MGP_CASTEiJ_P0035567 Wars protein_coding protein_coding MGP_CASTEiJ_T0035568.1 MGP_CASTEiJ_G0019395.1 mouse_genomes_project 12 105288086 105323246 - MGP_CASTEiJ_P0035568 Wars protein_coding protein_coding MGP_CASTEiJ_T0035569.1 MGP_CASTEiJ_G0019395.1 mouse_genomes_project 12 105288086 105323209 - MGP_CASTEiJ_P0035569 Wars protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035570.1 MGP_CASTEiJ_G0019395.1 mouse_genomes_project 12 105288090 105322282 - MGP_CASTEiJ_P0035570 Wars protein_coding protein_coding MGP_CASTEiJ_T0035571.1 MGP_CASTEiJ_G0019395.1 mouse_genomes_project 12 105295421 105304385 - Wars protein_coding retained_intron MGP_CASTEiJ_T0035572.1 MGP_CASTEiJ_G0019395.1 mouse_genomes_project 12 105304217 105323173 - MGP_CASTEiJ_P0035572 Wars protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035573.1 MGP_CASTEiJ_G0019395.1 mouse_genomes_project 12 105309823 105317515 - Wars protein_coding retained_intron MGP_CASTEiJ_T0100508.1 MGP_CASTEiJ_G0037421.1 mouse_genomes_project 12 53519493 53519623 - Gm24377 snoRNA snoRNA MGP_CASTEiJ_T0034597.1 MGP_CASTEiJ_G0019087.1 mouse_genomes_project 12 63557221 63558706 + Klhdc1 protein_coding processed_transcript MGP_CASTEiJ_T0034598.1 MGP_CASTEiJ_G0019087.1 mouse_genomes_project 12 63557897 63601686 + MGP_CASTEiJ_P0034598 Klhdc1 protein_coding protein_coding MGP_CASTEiJ_T0034599.1 MGP_CASTEiJ_G0019087.1 mouse_genomes_project 12 63557979 63558708 + Klhdc1 protein_coding processed_transcript MGP_CASTEiJ_T0034600.1 MGP_CASTEiJ_G0019087.1 mouse_genomes_project 12 63557983 63600373 + MGP_CASTEiJ_P0034600 Klhdc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012455.1 MGP_CASTEiJ_G0010618.1 mouse_genomes_project 12 53152913 53153888 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034129.1 MGP_CASTEiJ_G0018921.1 mouse_genomes_project 12 14659363 14708217 - MGP_CASTEiJ_P0034129 Atp6v1c2 protein_coding protein_coding MGP_CASTEiJ_T0034130.1 MGP_CASTEiJ_G0018921.1 mouse_genomes_project 12 14659364 14708208 - MGP_CASTEiJ_P0034130 Atp6v1c2 protein_coding protein_coding MGP_CASTEiJ_T0034131.1 MGP_CASTEiJ_G0018921.1 mouse_genomes_project 12 14659364 14708170 - MGP_CASTEiJ_P0034131 Atp6v1c2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034132.1 MGP_CASTEiJ_G0018921.1 mouse_genomes_project 12 14659365 14688683 - MGP_CASTEiJ_P0034132 Atp6v1c2 protein_coding protein_coding MGP_CASTEiJ_T0034133.1 MGP_CASTEiJ_G0018921.1 mouse_genomes_project 12 14659501 14708757 - MGP_CASTEiJ_P0034133 Atp6v1c2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034134.1 MGP_CASTEiJ_G0018921.1 mouse_genomes_project 12 14678024 14712782 - MGP_CASTEiJ_P0034134 Atp6v1c2 protein_coding protein_coding MGP_CASTEiJ_T0034135.1 MGP_CASTEiJ_G0018921.1 mouse_genomes_project 12 14688570 14708235 - MGP_CASTEiJ_P0034135 Atp6v1c2 protein_coding protein_coding MGP_CASTEiJ_T0034136.1 MGP_CASTEiJ_G0018921.1 mouse_genomes_project 12 14688614 14712793 - MGP_CASTEiJ_P0034136 Atp6v1c2 protein_coding protein_coding MGP_CASTEiJ_T0098488.1 MGP_CASTEiJ_G0035419.1 mouse_genomes_project 12 93177293 93177373 - Gm23558 rRNA rRNA MGP_CASTEiJ_T0012458.1 MGP_CASTEiJ_G0010621.1 mouse_genomes_project 12 56938322 56939313 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035116.1 MGP_CASTEiJ_G0019257.1 mouse_genomes_project 12 80975076 81045423 + MGP_CASTEiJ_P0035116 Mfsd7c protein_coding protein_coding MGP_CASTEiJ_T0034861.1 MGP_CASTEiJ_G0019181.1 mouse_genomes_project 12 75350621 75388866 + MGP_CASTEiJ_P0034861 Exd2 protein_coding protein_coding MGP_CASTEiJ_T0012479.1 MGP_CASTEiJ_G0010642.1 mouse_genomes_project 12 87479210 87479569 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034566.1 MGP_CASTEiJ_G0019075.1 mouse_genomes_project 12 59192639 59204152 - MGP_CASTEiJ_P0034566 Fkbp3 protein_coding protein_coding MGP_CASTEiJ_T0003295.1 MGP_CASTEiJ_G0003035.1 mouse_genomes_project 12 76173125 76188073 + Gm3693 antisense antisense MGP_CASTEiJ_T0035702.1 MGP_CASTEiJ_G0019433.1 mouse_genomes_project 12 108689442 108725716 + MGP_CASTEiJ_P0035702 Kif26a protein_coding protein_coding MGP_CASTEiJ_T0035703.1 MGP_CASTEiJ_G0019433.1 mouse_genomes_project 12 108723076 108724492 + Kif26a protein_coding processed_transcript MGP_CASTEiJ_T0099295.1 MGP_CASTEiJ_G0036208.1 mouse_genomes_project 12 16201490 16201589 + Gm22766 snRNA snRNA MGP_CASTEiJ_T0034056.1 MGP_CASTEiJ_G0018892.1 mouse_genomes_project 12 6047364 6065555 + MGP_CASTEiJ_P0034056 Laptm4a protein_coding protein_coding MGP_CASTEiJ_T0035732.1 MGP_CASTEiJ_G0019448.1 mouse_genomes_project 12 109534483 109541759 - MGP_CASTEiJ_P0035732 Nudt14 protein_coding protein_coding MGP_CASTEiJ_T0035711.1 MGP_CASTEiJ_G0019439.1 mouse_genomes_project 12 109229153 109250401 - MGP_CASTEiJ_P0035711 Akt1 protein_coding protein_coding MGP_CASTEiJ_T0035712.1 MGP_CASTEiJ_G0019439.1 mouse_genomes_project 12 109229999 109246810 - MGP_CASTEiJ_P0035712 Akt1 protein_coding protein_coding MGP_CASTEiJ_T0035713.1 MGP_CASTEiJ_G0019439.1 mouse_genomes_project 12 109231186 109232317 - Akt1 protein_coding retained_intron MGP_CASTEiJ_T0035714.1 MGP_CASTEiJ_G0019439.1 mouse_genomes_project 12 109232437 109234963 - Akt1 protein_coding retained_intron MGP_CASTEiJ_T0035715.1 MGP_CASTEiJ_G0019439.1 mouse_genomes_project 12 109232905 109234468 - Akt1 protein_coding retained_intron MGP_CASTEiJ_T0035716.1 MGP_CASTEiJ_G0019439.1 mouse_genomes_project 12 109233773 109251009 - MGP_CASTEiJ_P0035716 Akt1 protein_coding protein_coding MGP_CASTEiJ_T0035717.1 MGP_CASTEiJ_G0019439.1 mouse_genomes_project 12 109234485 109249183 - MGP_CASTEiJ_P0035717 Akt1 protein_coding protein_coding MGP_CASTEiJ_T0035718.1 MGP_CASTEiJ_G0019439.1 mouse_genomes_project 12 109234591 109243416 - Akt1 protein_coding processed_transcript MGP_CASTEiJ_T0000217.1 MGP_CASTEiJ_G0000166.1 mouse_genomes_project 12 110486663 110487577 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0012504.1 MGP_CASTEiJ_G0010667.1 mouse_genomes_project 12 116178450 116178892 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034633.1 MGP_CASTEiJ_G0019099.1 mouse_genomes_project 12 64319307 64325580 + MGP_CASTEiJ_P0034633 Gm3086 protein_coding protein_coding MGP_CASTEiJ_T0034333.1 MGP_CASTEiJ_G0018990.1 mouse_genomes_project 12 29272711 29338038 - MGP_CASTEiJ_P0034333 Bzw2 protein_coding protein_coding MGP_CASTEiJ_T0034334.1 MGP_CASTEiJ_G0018990.1 mouse_genomes_project 12 29273081 29370397 - MGP_CASTEiJ_P0034334 Bzw2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034416.1 MGP_CASTEiJ_G0019018.1 mouse_genomes_project 12 44954468 44978510 + MGP_CASTEiJ_P0034416 G2e3 protein_coding protein_coding MGP_CASTEiJ_T0034417.1 MGP_CASTEiJ_G0019018.1 mouse_genomes_project 12 44954548 44979078 + MGP_CASTEiJ_P0034417 G2e3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034418.1 MGP_CASTEiJ_G0019018.1 mouse_genomes_project 12 44966441 44972823 + G2e3 protein_coding retained_intron MGP_CASTEiJ_T0034985.1 MGP_CASTEiJ_G0019211.1 mouse_genomes_project 12 79018460 79020806 + MGP_CASTEiJ_P0034985 2410016O06Rik protein_coding protein_coding MGP_CASTEiJ_T0100544.1 MGP_CASTEiJ_G0037457.1 mouse_genomes_project 12 106146926 106147013 + Gm22981 snoRNA snoRNA MGP_CASTEiJ_T0034829.1 MGP_CASTEiJ_G0019166.1 mouse_genomes_project 12 73635649 73657511 - MGP_CASTEiJ_P0034829 Atp6v1d protein_coding unknown_likely_coding MGP_CASTEiJ_T0100526.1 MGP_CASTEiJ_G0037439.1 mouse_genomes_project 12 102391632 102391764 + Gm24986 snoRNA snoRNA MGP_CASTEiJ_T0034202.1 MGP_CASTEiJ_G0018946.1 mouse_genomes_project 12 21439030 21444375 - MGP_CASTEiJ_P0034202 Rps7 protein_coding protein_coding MGP_CASTEiJ_T0033986.1 MGP_CASTEiJ_G0018868.1 mouse_genomes_project 12 1092802 1113137 - MGP_CASTEiJ_P0033986 Cenpo protein_coding protein_coding MGP_CASTEiJ_T0033987.1 MGP_CASTEiJ_G0018868.1 mouse_genomes_project 12 1094620 1128391 - MGP_CASTEiJ_P0033987 Cenpo protein_coding protein_coding MGP_CASTEiJ_T0033989.1 MGP_CASTEiJ_G0018868.1 mouse_genomes_project 12 1110074 1113097 - Cenpo protein_coding retained_intron MGP_CASTEiJ_T0033990.1 MGP_CASTEiJ_G0018868.1 mouse_genomes_project 12 1110143 1128369 - MGP_CASTEiJ_P0033990 Cenpo protein_coding protein_coding MGP_CASTEiJ_T0033991.1 MGP_CASTEiJ_G0018868.1 mouse_genomes_project 12 1111948 1126264 - MGP_CASTEiJ_P0033991 Cenpo protein_coding protein_coding MGP_CASTEiJ_T0033992.1 MGP_CASTEiJ_G0018868.1 mouse_genomes_project 12 1112282 1128364 - Cenpo protein_coding retained_intron MGP_CASTEiJ_T0010995.1 MGP_CASTEiJ_G0009183.1 mouse_genomes_project 12 49989455 49989740 - Gm24685 misc_RNA misc_RNA MGP_CASTEiJ_T0009551.1 MGP_CASTEiJ_G0007739.1 mouse_genomes_project 12 63889795 63889904 - Gm23018 miRNA miRNA MGP_CASTEiJ_T0035076.1 MGP_CASTEiJ_G0019242.1 mouse_genomes_project 12 80168039 80246350 + MGP_CASTEiJ_P0035076 Ylpm1 protein_coding protein_coding MGP_CASTEiJ_T0035077.1 MGP_CASTEiJ_G0019242.1 mouse_genomes_project 12 80168070 80246373 + MGP_CASTEiJ_P0035077 Ylpm1 protein_coding protein_coding MGP_CASTEiJ_T0035078.1 MGP_CASTEiJ_G0019242.1 mouse_genomes_project 12 80168208 80246372 + MGP_CASTEiJ_P0035078 Ylpm1 protein_coding protein_coding MGP_CASTEiJ_T0035079.1 MGP_CASTEiJ_G0019242.1 mouse_genomes_project 12 80188737 80246350 + MGP_CASTEiJ_P0035079 Ylpm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035080.1 MGP_CASTEiJ_G0019242.1 mouse_genomes_project 12 80217986 80235293 + Ylpm1 protein_coding retained_intron MGP_CASTEiJ_T0035081.1 MGP_CASTEiJ_G0019242.1 mouse_genomes_project 12 80225718 80226648 + Ylpm1 protein_coding retained_intron MGP_CASTEiJ_T0035082.1 MGP_CASTEiJ_G0019242.1 mouse_genomes_project 12 80235916 80246108 + Ylpm1 protein_coding retained_intron MGP_CASTEiJ_T0035083.1 MGP_CASTEiJ_G0019242.1 mouse_genomes_project 12 80240646 80246273 + Ylpm1 protein_coding retained_intron MGP_CASTEiJ_T0034414.1 MGP_CASTEiJ_G0019017.1 mouse_genomes_project 12 43937092 44254769 - MGP_CASTEiJ_P0034414 Prkd1 protein_coding protein_coding MGP_CASTEiJ_T0034415.1 MGP_CASTEiJ_G0019017.1 mouse_genomes_project 12 43937798 43992217 - MGP_CASTEiJ_P0034415 Prkd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034057.1 MGP_CASTEiJ_G0018893.1 mouse_genomes_project 12 6075171 6098702 + MGP_CASTEiJ_P0034057 Matn3 protein_coding protein_coding MGP_CASTEiJ_T0009620.1 MGP_CASTEiJ_G0007808.1 mouse_genomes_project 12 106190490 106190569 + Mir300 miRNA miRNA MGP_CASTEiJ_T0034413.1 MGP_CASTEiJ_G0019016.1 mouse_genomes_project 12 42963915 42964476 + MGP_CASTEiJ_P0034413 Gm9804 protein_coding protein_coding MGP_CASTEiJ_T0009590.1 MGP_CASTEiJ_G0007778.1 mouse_genomes_project 12 106047684 106047759 + Mir432 miRNA miRNA MGP_CASTEiJ_T0009612.1 MGP_CASTEiJ_G0007800.1 mouse_genomes_project 12 106183471 106183547 + Mir543 miRNA miRNA MGP_CASTEiJ_T0034074.1 MGP_CASTEiJ_G0018900.1 mouse_genomes_project 12 8272655 8327115 - MGP_CASTEiJ_P0034074 Kcns3 protein_coding protein_coding MGP_CASTEiJ_T0034075.1 MGP_CASTEiJ_G0018900.1 mouse_genomes_project 12 8272655 8327584 - MGP_CASTEiJ_P0034075 Kcns3 protein_coding protein_coding MGP_CASTEiJ_T0034920.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77578909 78060174 + MGP_CASTEiJ_P0034920 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034921.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77608501 78184058 + MGP_CASTEiJ_P0034921 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034922.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77608790 78111931 + MGP_CASTEiJ_P0034922 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034923.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77608810 78184328 + MGP_CASTEiJ_P0034923 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034924.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77608903 78184900 + MGP_CASTEiJ_P0034924 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034925.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77609364 78185457 + MGP_CASTEiJ_P0034925 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034926.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77609364 78189880 + MGP_CASTEiJ_P0034926 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034927.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77609437 78184434 + MGP_CASTEiJ_P0034927 Rgs6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034928.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77609452 78081635 + MGP_CASTEiJ_P0034928 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034929.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77609500 78063951 + MGP_CASTEiJ_P0034929 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034930.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77609519 78184180 + MGP_CASTEiJ_P0034930 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034931.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77609714 78063889 + MGP_CASTEiJ_P0034931 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034932.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77609890 77610858 + Rgs6 protein_coding retained_intron MGP_CASTEiJ_T0034933.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77641317 78160493 + MGP_CASTEiJ_P0034933 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034934.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77641317 78184058 + MGP_CASTEiJ_P0034934 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034935.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77641317 78184058 + MGP_CASTEiJ_P0034935 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034936.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77641317 78160370 + MGP_CASTEiJ_P0034936 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034937.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77641317 78156475 + MGP_CASTEiJ_P0034937 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034938.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 77641317 78160370 + MGP_CASTEiJ_P0034938 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034939.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 78059571 78060702 + Rgs6 protein_coding retained_intron MGP_CASTEiJ_T0034940.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 78127562 78184294 + MGP_CASTEiJ_P0034940 Rgs6 protein_coding protein_coding MGP_CASTEiJ_T0034941.1 MGP_CASTEiJ_G0019203.1 mouse_genomes_project 12 78138376 78160316 + Rgs6 protein_coding retained_intron MGP_CASTEiJ_T0035269.1 MGP_CASTEiJ_G0019293.1 mouse_genomes_project 12 94090241 94098367 + MGP_CASTEiJ_P0035269 Gpr65 protein_coding protein_coding MGP_CASTEiJ_T0035271.1 MGP_CASTEiJ_G0019295.1 mouse_genomes_project 12 94463212 94509302 + MGP_CASTEiJ_P0035271 Spata7 protein_coding protein_coding MGP_CASTEiJ_T0035272.1 MGP_CASTEiJ_G0019295.1 mouse_genomes_project 12 94463217 94473789 + Spata7 protein_coding retained_intron MGP_CASTEiJ_T0035273.1 MGP_CASTEiJ_G0019295.1 mouse_genomes_project 12 94463222 94509302 + MGP_CASTEiJ_P0035273 Spata7 protein_coding protein_coding MGP_CASTEiJ_T0035274.1 MGP_CASTEiJ_G0019295.1 mouse_genomes_project 12 94463245 94467835 + Spata7 protein_coding retained_intron MGP_CASTEiJ_T0035275.1 MGP_CASTEiJ_G0019295.1 mouse_genomes_project 12 94463252 94509299 + MGP_CASTEiJ_P0035275 Spata7 protein_coding protein_coding MGP_CASTEiJ_T0035276.1 MGP_CASTEiJ_G0019295.1 mouse_genomes_project 12 94503752 94508764 + Spata7 protein_coding retained_intron MGP_CASTEiJ_T0034879.1 MGP_CASTEiJ_G0019189.1 mouse_genomes_project 12 75882303 75899044 - MGP_CASTEiJ_P0034879 Slc10a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034990.1 MGP_CASTEiJ_G0019216.1 mouse_genomes_project 12 79119127 79125310 + MGP_CASTEiJ_P0034990 Acot4 protein_coding protein_coding MGP_CASTEiJ_T0034991.1 MGP_CASTEiJ_G0019216.1 mouse_genomes_project 12 79119262 79122803 + Acot4 protein_coding retained_intron MGP_CASTEiJ_T0100515.1 MGP_CASTEiJ_G0037428.1 mouse_genomes_project 12 60754610 60754729 - Gm23826 snoRNA snoRNA MGP_CASTEiJ_T0012461.1 MGP_CASTEiJ_G0010624.1 mouse_genomes_project 12 63449572 63450206 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0035391.1 MGP_CASTEiJ_G0019327.1 mouse_genomes_project 12 98539900 98541305 - MGP_CASTEiJ_P0035391 Moap1 protein_coding protein_coding MGP_CASTEiJ_T0035392.1 MGP_CASTEiJ_G0019327.1 mouse_genomes_project 12 98539900 98541321 - MGP_CASTEiJ_P0035392 Moap1 protein_coding protein_coding MGP_CASTEiJ_T0034611.1 MGP_CASTEiJ_G0019093.1 mouse_genomes_project 12 63913560 63916926 - Sos2 protein_coding retained_intron MGP_CASTEiJ_T0034612.1 MGP_CASTEiJ_G0019093.1 mouse_genomes_project 12 63913564 64013895 - MGP_CASTEiJ_P0034612 Sos2 protein_coding protein_coding MGP_CASTEiJ_T0034613.1 MGP_CASTEiJ_G0019093.1 mouse_genomes_project 12 63914653 64013884 - MGP_CASTEiJ_P0034613 Sos2 protein_coding protein_coding MGP_CASTEiJ_T0034614.1 MGP_CASTEiJ_G0019093.1 mouse_genomes_project 12 63914889 64013670 - MGP_CASTEiJ_P0034614 Sos2 protein_coding protein_coding MGP_CASTEiJ_T0034615.1 MGP_CASTEiJ_G0019093.1 mouse_genomes_project 12 63915175 63918738 - Sos2 protein_coding retained_intron MGP_CASTEiJ_T0034616.1 MGP_CASTEiJ_G0019093.1 mouse_genomes_project 12 63925059 63927568 - Sos2 protein_coding retained_intron MGP_CASTEiJ_T0034617.1 MGP_CASTEiJ_G0019093.1 mouse_genomes_project 12 63944015 63946715 - Sos2 protein_coding retained_intron MGP_CASTEiJ_T0034618.1 MGP_CASTEiJ_G0019093.1 mouse_genomes_project 12 63944042 64013747 - MGP_CASTEiJ_P0034618 Sos2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034589.1 MGP_CASTEiJ_G0019081.1 mouse_genomes_project 12 63476597 63488037 + MGP_CASTEiJ_P0034589 Lrr1 protein_coding protein_coding MGP_CASTEiJ_T0009607.1 MGP_CASTEiJ_G0007795.1 mouse_genomes_project 12 106179737 106179834 + Mir329 miRNA miRNA MGP_CASTEiJ_T0034000.1 MGP_CASTEiJ_G0018875.1 mouse_genomes_project 12 1684936 1705456 - MGP_CASTEiJ_P0034000 Fam228b protein_coding protein_coding MGP_CASTEiJ_T0016558.1 MGP_CASTEiJ_G0014542.1 mouse_genomes_project 12 26380313 26420703 - Atxn7l1os2 processed_transcript processed_transcript MGP_CASTEiJ_T0034204.1 MGP_CASTEiJ_G0018948.1 mouse_genomes_project 12 21482923 21489565 + MGP_CASTEiJ_P0034204 Adi1 protein_coding protein_coding MGP_CASTEiJ_T0034205.1 MGP_CASTEiJ_G0018948.1 mouse_genomes_project 12 21483176 21489119 + MGP_CASTEiJ_P0034205 Adi1 protein_coding protein_coding MGP_CASTEiJ_T0034206.1 MGP_CASTEiJ_G0018948.1 mouse_genomes_project 12 21485225 21487128 + Adi1 protein_coding processed_transcript MGP_CASTEiJ_T0034846.1 MGP_CASTEiJ_G0019174.1 mouse_genomes_project 12 73982261 74001474 - MGP_CASTEiJ_P0034846 Rdh11 protein_coding protein_coding MGP_CASTEiJ_T0034847.1 MGP_CASTEiJ_G0019174.1 mouse_genomes_project 12 73983475 74000141 - MGP_CASTEiJ_P0034847 Rdh11 protein_coding protein_coding MGP_CASTEiJ_T0034848.1 MGP_CASTEiJ_G0019174.1 mouse_genomes_project 12 73984089 74000974 - MGP_CASTEiJ_P0034848 Rdh11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0099305.1 MGP_CASTEiJ_G0036218.1 mouse_genomes_project 12 48744934 48745043 + Gm24296 snRNA snRNA MGP_CASTEiJ_T0012467.1 MGP_CASTEiJ_G0010630.1 mouse_genomes_project 12 73971623 73972051 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012451.1 MGP_CASTEiJ_G0010614.1 mouse_genomes_project 12 50107962 50108193 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0034730.1 MGP_CASTEiJ_G0019130.1 mouse_genomes_project 12 67801995 67808277 - MGP_CASTEiJ_P0034730 Trmt5 protein_coding protein_coding MGP_CASTEiJ_T0035478.1 MGP_CASTEiJ_G0019361.1 mouse_genomes_project 12 100461206 100469574 - MGP_CASTEiJ_P0035478 Gsc protein_coding unknown_likely_coding MGP_CASTEiJ_T0035479.1 MGP_CASTEiJ_G0019361.1 mouse_genomes_project 12 100467552 100469675 - MGP_CASTEiJ_P0035479 Gsc protein_coding protein_coding MGP_CASTEiJ_T0000259.1 MGP_CASTEiJ_G0000208.1 mouse_genomes_project 12 112070275 112070708 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0035142.1 MGP_CASTEiJ_G0019261.1 mouse_genomes_project 12 81324615 81410447 + MGP_CASTEiJ_P0035142 Ift43 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035143.1 MGP_CASTEiJ_G0019261.1 mouse_genomes_project 12 81324622 81410440 + MGP_CASTEiJ_P0035143 Ift43 protein_coding protein_coding MGP_CASTEiJ_T0034562.1 MGP_CASTEiJ_G0019073.1 mouse_genomes_project 12 59089537 59150516 + MGP_CASTEiJ_P0034562 Fam179b protein_coding protein_coding MGP_CASTEiJ_T0034563.1 MGP_CASTEiJ_G0019073.1 mouse_genomes_project 12 59089772 59150522 + MGP_CASTEiJ_P0034563 Fam179b protein_coding unknown_likely_coding MGP_CASTEiJ_T0009593.1 MGP_CASTEiJ_G0007781.1 mouse_genomes_project 12 106064298 106064390 + Mir341 miRNA miRNA MGP_CASTEiJ_T0034030.1 MGP_CASTEiJ_G0018887.1 mouse_genomes_project 12 5373090 5417199 + MGP_CASTEiJ_P0034030 Hs1bp3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034031.1 MGP_CASTEiJ_G0018887.1 mouse_genomes_project 12 5373097 5406478 + MGP_CASTEiJ_P0034031 Hs1bp3 protein_coding protein_coding MGP_CASTEiJ_T0035636.1 MGP_CASTEiJ_G0019413.1 mouse_genomes_project 12 107761559 107766886 + MGP_CASTEiJ_P0035636 Amn protein_coding protein_coding MGP_CASTEiJ_T0035216.1 MGP_CASTEiJ_G0019285.1 mouse_genomes_project 12 84207159 84349588 + MGP_CASTEiJ_P0035216 Nrxn3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035217.1 MGP_CASTEiJ_G0019285.1 mouse_genomes_project 12 84207187 84780399 + Nrxn3 protein_coding retained_intron MGP_CASTEiJ_T0035218.1 MGP_CASTEiJ_G0019285.1 mouse_genomes_project 12 84207199 84345780 + Nrxn3 protein_coding retained_intron MGP_CASTEiJ_T0035219.1 MGP_CASTEiJ_G0019285.1 mouse_genomes_project 12 84207297 85907097 + MGP_CASTEiJ_P0035219 Nrxn3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035220.1 MGP_CASTEiJ_G0019285.1 mouse_genomes_project 12 84207420 85907116 + MGP_CASTEiJ_P0035220 Nrxn3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0035221.1 MGP_CASTEiJ_G0019285.1 mouse_genomes_project 12 84209329 84287222 + Nrxn3 protein_coding processed_transcript MGP_CASTEiJ_T0035222.1 MGP_CASTEiJ_G0019285.1 mouse_genomes_project 12 84210000 84287088 + Nrxn3 protein_coding processed_transcript MGP_CASTEiJ_T0035223.1 MGP_CASTEiJ_G0019285.1 mouse_genomes_project 12 84286607 85909147 + MGP_CASTEiJ_P0035223 Nrxn3 protein_coding protein_coding MGP_CASTEiJ_T0035224.1 MGP_CASTEiJ_G0019285.1 mouse_genomes_project 12 84287545 84349711 + Nrxn3 protein_coding processed_transcript MGP_CASTEiJ_T0035225.1 MGP_CASTEiJ_G0019285.1 mouse_genomes_project 12 84452313 84705552 + Nrxn3 protein_coding processed_transcript MGP_CASTEiJ_T0035226.1 MGP_CASTEiJ_G0019285.1 mouse_genomes_project 12 84452322 85907275 + MGP_CASTEiJ_P0035226 Nrxn3 protein_coding protein_coding MGP_CASTEiJ_T0035227.1 MGP_CASTEiJ_G0019285.1 mouse_genomes_project 12 84711322 85906638 + MGP_CASTEiJ_P0035227 Nrxn3 protein_coding protein_coding MGP_CASTEiJ_T0035228.1 MGP_CASTEiJ_G0019285.1 mouse_genomes_project 12 85352340 85907657 + MGP_CASTEiJ_P0035228 Nrxn3 protein_coding protein_coding MGP_CASTEiJ_T0035229.1 MGP_CASTEiJ_G0019285.1 mouse_genomes_project 12 85352340 85907118 + MGP_CASTEiJ_P0035229 Nrxn3 protein_coding protein_coding MGP_CASTEiJ_T0035563.1 MGP_CASTEiJ_G0019393.1 mouse_genomes_project 12 105251930 105261949 - MGP_CASTEiJ_P0035563 Slc25a29 protein_coding protein_coding MGP_CASTEiJ_T0035564.1 MGP_CASTEiJ_G0019393.1 mouse_genomes_project 12 105253295 105257683 - Slc25a29 protein_coding retained_intron MGP_CASTEiJ_T0035565.1 MGP_CASTEiJ_G0019393.1 mouse_genomes_project 12 105257008 105261886 - Slc25a29 protein_coding retained_intron MGP_CASTEiJ_T0000819.1 MGP_CASTEiJ_G0000759.1 mouse_genomes_project 12 50359094 50359958 - TEC TEC MGP_CASTEiJ_T0034564.1 MGP_CASTEiJ_G0019074.1 mouse_genomes_project 12 59162115 59193589 + MGP_CASTEiJ_P0034564 Prpf39 protein_coding protein_coding MGP_CASTEiJ_T0034565.1 MGP_CASTEiJ_G0019074.1 mouse_genomes_project 12 59162148 59193589 + MGP_CASTEiJ_P0034565 Prpf39 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034283.1 MGP_CASTEiJ_G0018972.1 mouse_genomes_project 12 25126495 25164835 - MGP_CASTEiJ_P0034283 Pik3cg protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034284.1 MGP_CASTEiJ_G0018972.1 mouse_genomes_project 12 25127192 25164883 - MGP_CASTEiJ_P0034284 Pik3cg protein_coding protein_coding MGP_CASTEiJ_T0034285.1 MGP_CASTEiJ_G0018972.1 mouse_genomes_project 12 25129840 25164694 - MGP_CASTEiJ_P0034285 Pik3cg protein_coding protein_coding MGP_CASTEiJ_T0034286.1 MGP_CASTEiJ_G0018972.1 mouse_genomes_project 12 25156088 25164472 - MGP_CASTEiJ_P0034286 Pik3cg protein_coding unknown_likely_coding MGP_CASTEiJ_T0034287.1 MGP_CASTEiJ_G0018972.1 mouse_genomes_project 12 25156766 25157225 - Pik3cg protein_coding retained_intron MGP_CASTEiJ_T0035106.1 MGP_CASTEiJ_G0019252.1 mouse_genomes_project 12 80537988 80574944 - MGP_CASTEiJ_P0035106 Tmed10 protein_coding protein_coding MGP_CASTEiJ_T0003281.1 MGP_CASTEiJ_G0003025.1 mouse_genomes_project 12 50282625 50356943 + Gm26973 antisense antisense MGP_CASTEiJ_T0003282.1 MGP_CASTEiJ_G0003025.1 mouse_genomes_project 12 50284544 50316842 + Gm26973 antisense antisense MGP_CASTEiJ_T0003283.1 MGP_CASTEiJ_G0003025.1 mouse_genomes_project 12 50284595 50356980 + Gm26973 antisense antisense MGP_CASTEiJ_T0003274.1 MGP_CASTEiJ_G0003018.1 mouse_genomes_project 12 22916788 22919234 + Gm15691 antisense antisense MGP_CASTEiJ_T0009626.1 MGP_CASTEiJ_G0007814.1 mouse_genomes_project 12 106195531 106195609 + Mir544 miRNA miRNA MGP_CASTEiJ_T0034262.1 MGP_CASTEiJ_G0018965.1 mouse_genomes_project 12 24414204 24463582 - MGP_CASTEiJ_P0034262 Slc26a4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034263.1 MGP_CASTEiJ_G0018965.1 mouse_genomes_project 12 24414215 24464191 - MGP_CASTEiJ_P0034263 Slc26a4 protein_coding protein_coding MGP_CASTEiJ_T0035461.1 MGP_CASTEiJ_G0019351.1 mouse_genomes_project 12 100000087 100012213 + MGP_CASTEiJ_P0035461 Serpina3a protein_coding protein_coding MGP_CASTEiJ_T0035462.1 MGP_CASTEiJ_G0019351.1 mouse_genomes_project 12 100000142 100012125 + MGP_CASTEiJ_P0035462 Serpina3a protein_coding protein_coding MGP_CASTEiJ_T0035463.1 MGP_CASTEiJ_G0019351.1 mouse_genomes_project 12 100003399 100008869 + MGP_CASTEiJ_P0035463 Serpina3a protein_coding protein_coding MGP_CASTEiJ_T0099331.1 MGP_CASTEiJ_G0036244.1 mouse_genomes_project 12 112589337 112589441 - Gm25112 snRNA snRNA MGP_CASTEiJ_T0006317.1 MGP_CASTEiJ_G0005268.1 mouse_genomes_project 12 106021482 106024586 - Gm26906 lincRNA lincRNA MGP_CASTEiJ_T0009622.1 MGP_CASTEiJ_G0007810.1 mouse_genomes_project 12 106193512 106193594 + Mir487b miRNA miRNA MGP_CASTEiJ_T0009624.1 MGP_CASTEiJ_G0007812.1 mouse_genomes_project 12 106194309 106194383 + Mir539 miRNA miRNA MGP_CASTEiJ_T0034330.1 MGP_CASTEiJ_G0018989.1 mouse_genomes_project 12 29179630 29213911 - MGP_CASTEiJ_P0034330 Tspan13 protein_coding protein_coding MGP_CASTEiJ_T0034331.1 MGP_CASTEiJ_G0018989.1 mouse_genomes_project 12 29191313 29213922 - MGP_CASTEiJ_P0034331 Tspan13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034332.1 MGP_CASTEiJ_G0018989.1 mouse_genomes_project 12 29191324 29211347 - MGP_CASTEiJ_P0034332 Tspan13 protein_coding protein_coding MGP_CASTEiJ_T0034731.1 MGP_CASTEiJ_G0019131.1 mouse_genomes_project 12 67808344 67879402 + MGP_CASTEiJ_P0034731 Slc38a6 protein_coding protein_coding MGP_CASTEiJ_T0034732.1 MGP_CASTEiJ_G0019131.1 mouse_genomes_project 12 67808355 67838972 + MGP_CASTEiJ_P0034732 Slc38a6 protein_coding protein_coding MGP_CASTEiJ_T0034733.1 MGP_CASTEiJ_G0019131.1 mouse_genomes_project 12 67808473 67838961 + MGP_CASTEiJ_P0034733 Slc38a6 protein_coding protein_coding MGP_CASTEiJ_T0034734.1 MGP_CASTEiJ_G0019131.1 mouse_genomes_project 12 67838584 67861528 + Slc38a6 protein_coding retained_intron MGP_CASTEiJ_T0034735.1 MGP_CASTEiJ_G0019131.1 mouse_genomes_project 12 67866083 67875689 + Slc38a6 protein_coding retained_intron MGP_CASTEiJ_T0003297.1 MGP_CASTEiJ_G0003037.1 mouse_genomes_project 12 76557780 76559509 + Gm16572 antisense antisense MGP_CASTEiJ_T0098479.1 MGP_CASTEiJ_G0035410.1 mouse_genomes_project 12 46717692 46717811 - n-R5s58 rRNA rRNA MGP_CASTEiJ_T0035484.1 MGP_CASTEiJ_G0019365.1 mouse_genomes_project 12 100898664 100906942 + MGP_CASTEiJ_P0035484 4930408O17Rik protein_coding protein_coding MGP_CASTEiJ_T0034989.1 MGP_CASTEiJ_G0019215.1 mouse_genomes_project 12 79058849 79065233 + MGP_CASTEiJ_P0034989 protein_coding protein_coding MGP_CASTEiJ_T0006271.1 MGP_CASTEiJ_G0005237.1 mouse_genomes_project 12 81547451 81567807 - 4732487G21Rik lincRNA lincRNA MGP_CASTEiJ_T0012454.1 MGP_CASTEiJ_G0010617.1 mouse_genomes_project 12 51485142 51485580 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000106.1 MGP_CASTEiJ_G0000083.1 mouse_genomes_project 12 111290260 111290729 - MGP_CASTEiJ_P0000106 Ighv1-12 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000107.1 MGP_CASTEiJ_G0000083.1 mouse_genomes_project 12 111290260 111290554 - MGP_CASTEiJ_P0000107 Ighv1-12 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000108.1 MGP_CASTEiJ_G0000083.1 mouse_genomes_project 12 111290260 111290729 - MGP_CASTEiJ_P0000108 Ighv1-12 IG_V_gene IG_V_gene MGP_CASTEiJ_T0012489.1 MGP_CASTEiJ_G0010652.1 mouse_genomes_project 12 102658302 102658648 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000238.1 MGP_CASTEiJ_G0000187.1 mouse_genomes_project 12 111150729 111151022 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0034909.1 MGP_CASTEiJ_G0019197.1 mouse_genomes_project 12 76545102 76546152 - Med6 protein_coding retained_intron MGP_CASTEiJ_T0034910.1 MGP_CASTEiJ_G0019197.1 mouse_genomes_project 12 76545236 76564890 - MGP_CASTEiJ_P0034910 Med6 protein_coding protein_coding MGP_CASTEiJ_T0034911.1 MGP_CASTEiJ_G0019197.1 mouse_genomes_project 12 76556064 76564886 - Med6 protein_coding retained_intron MGP_CASTEiJ_T0003296.1 MGP_CASTEiJ_G0003036.1 mouse_genomes_project 12 76450902 76460196 + antisense antisense MGP_CASTEiJ_T0098743.1 MGP_CASTEiJ_G0035674.1 mouse_genomes_project 12 75287074 75287213 - Scarna3b scaRNA scaRNA MGP_CASTEiJ_T0000816.1 MGP_CASTEiJ_G0000756.1 mouse_genomes_project 12 9786224 9786757 + TEC TEC MGP_CASTEiJ_T0034028.1 MGP_CASTEiJ_G0018886.1 mouse_genomes_project 12 5354896 5360530 - MGP_CASTEiJ_P0034028 Gdf7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034029.1 MGP_CASTEiJ_G0018886.1 mouse_genomes_project 12 5356532 5360526 - MGP_CASTEiJ_P0034029 Gdf7 protein_coding protein_coding MGP_CASTEiJ_T0034797.1 MGP_CASTEiJ_G0019155.1 mouse_genomes_project 12 71257517 71305802 + MGP_CASTEiJ_P0034797 Plekhg3 protein_coding protein_coding MGP_CASTEiJ_T0034798.1 MGP_CASTEiJ_G0019155.1 mouse_genomes_project 12 71273905 71305162 + MGP_CASTEiJ_P0034798 Plekhg3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003298.1 MGP_CASTEiJ_G0003038.1 mouse_genomes_project 12 77936740 77943401 - 1700085C21Rik antisense antisense MGP_CASTEiJ_T0035739.1 MGP_CASTEiJ_G0019452.1 mouse_genomes_project 12 109620011 109681656 + MGP_CASTEiJ_P0035739 Pacs2 protein_coding protein_coding MGP_CASTEiJ_T0034080.1 MGP_CASTEiJ_G0018905.1 mouse_genomes_project 12 8653436 8661293 + MGP_CASTEiJ_P0034080 Rad51ap2 protein_coding protein_coding MGP_CASTEiJ_T0000092.1 MGP_CASTEiJ_G0000072.1 mouse_genomes_project 12 111093529 111093986 - MGP_CASTEiJ_P0000092 Ighv6-6 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034864.1 MGP_CASTEiJ_G0019184.1 mouse_genomes_project 12 75544789 75584928 + MGP_CASTEiJ_P0034864 Slc39a9 protein_coding protein_coding MGP_CASTEiJ_T0034289.1 MGP_CASTEiJ_G0018974.1 mouse_genomes_project 12 25797007 25831189 + MGP_CASTEiJ_P0034289 Nampt protein_coding protein_coding MGP_CASTEiJ_T0098828.1 MGP_CASTEiJ_G0035756.1 mouse_genomes_project 12 50337225 50341180 + C87198 sense_intronic sense_intronic MGP_CASTEiJ_T0098829.1 MGP_CASTEiJ_G0035756.1 mouse_genomes_project 12 50337234 50340684 + C87198 sense_intronic sense_intronic MGP_CASTEiJ_T0000103.1 MGP_CASTEiJ_G0000081.1 mouse_genomes_project 12 111264189 111264623 - MGP_CASTEiJ_P0000103 Ighv1-9 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000104.1 MGP_CASTEiJ_G0000081.1 mouse_genomes_project 12 111264189 111264623 - MGP_CASTEiJ_P0000104 Ighv1-9 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034672.1 MGP_CASTEiJ_G0019111.1 mouse_genomes_project 12 65518085 65531642 - MGP_CASTEiJ_P0034672 Timm9 protein_coding protein_coding MGP_CASTEiJ_T0034673.1 MGP_CASTEiJ_G0019111.1 mouse_genomes_project 12 65518085 65531642 - MGP_CASTEiJ_P0034673 Timm9 protein_coding protein_coding MGP_CASTEiJ_T0006250.1 MGP_CASTEiJ_G0005220.1 mouse_genomes_project 12 43045869 43049742 - 1810007C17Rik lincRNA lincRNA MGP_CASTEiJ_T0006277.1 MGP_CASTEiJ_G0005243.1 mouse_genomes_project 12 95057686 95059095 + Gm28933 lincRNA lincRNA MGP_CASTEiJ_T0034033.1 MGP_CASTEiJ_G0018889.1 mouse_genomes_project 12 5603410 5662069 - MGP_CASTEiJ_P0034033 Slc7a15 protein_coding protein_coding MGP_CASTEiJ_T0034034.1 MGP_CASTEiJ_G0018889.1 mouse_genomes_project 12 5604288 5615353 - MGP_CASTEiJ_P0034034 Slc7a15 protein_coding protein_coding MGP_CASTEiJ_T0034035.1 MGP_CASTEiJ_G0018889.1 mouse_genomes_project 12 5614008 5615374 - Slc7a15 protein_coding processed_transcript MGP_CASTEiJ_T0034097.1 MGP_CASTEiJ_G0018914.1 mouse_genomes_project 12 14004093 14097419 - MGP_CASTEiJ_P0034097 Greb1 protein_coding protein_coding MGP_CASTEiJ_T0034098.1 MGP_CASTEiJ_G0018914.1 mouse_genomes_project 12 14004093 14144512 - MGP_CASTEiJ_P0034098 Greb1 protein_coding protein_coding MGP_CASTEiJ_T0034099.1 MGP_CASTEiJ_G0018914.1 mouse_genomes_project 12 14005547 14097373 - MGP_CASTEiJ_P0034099 Greb1 protein_coding protein_coding MGP_CASTEiJ_T0034100.1 MGP_CASTEiJ_G0018914.1 mouse_genomes_project 12 14007276 14008508 - Greb1 protein_coding retained_intron MGP_CASTEiJ_T0034101.1 MGP_CASTEiJ_G0018914.1 mouse_genomes_project 12 14016760 14024736 - Greb1 protein_coding retained_intron MGP_CASTEiJ_T0034102.1 MGP_CASTEiJ_G0018914.1 mouse_genomes_project 12 14024464 14073790 - Greb1 protein_coding retained_intron MGP_CASTEiJ_T0034103.1 MGP_CASTEiJ_G0018914.1 mouse_genomes_project 12 14035941 14041636 - Greb1 protein_coding retained_intron MGP_CASTEiJ_T0034104.1 MGP_CASTEiJ_G0018914.1 mouse_genomes_project 12 14039714 14042066 - Greb1 protein_coding retained_intron MGP_CASTEiJ_T0034105.1 MGP_CASTEiJ_G0018914.1 mouse_genomes_project 12 14039725 14042218 - MGP_CASTEiJ_P0034105 Greb1 protein_coding protein_coding MGP_CASTEiJ_T0034106.1 MGP_CASTEiJ_G0018914.1 mouse_genomes_project 12 14041498 14045431 - MGP_CASTEiJ_P0034106 Greb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034107.1 MGP_CASTEiJ_G0018914.1 mouse_genomes_project 12 14056777 14073691 - Greb1 protein_coding retained_intron MGP_CASTEiJ_T0034108.1 MGP_CASTEiJ_G0018914.1 mouse_genomes_project 12 14066832 14144724 - MGP_CASTEiJ_P0034108 Greb1 protein_coding protein_coding MGP_CASTEiJ_T0035691.1 MGP_CASTEiJ_G0019431.1 mouse_genomes_project 12 108517675 108519887 - MGP_CASTEiJ_P0035691 Rd3l protein_coding protein_coding MGP_CASTEiJ_T0035692.1 MGP_CASTEiJ_G0019431.1 mouse_genomes_project 12 108517676 108518704 - MGP_CASTEiJ_P0035692 Rd3l protein_coding protein_coding MGP_CASTEiJ_T0035693.1 MGP_CASTEiJ_G0019431.1 mouse_genomes_project 12 108517709 108519624 - MGP_CASTEiJ_P0035693 Rd3l protein_coding protein_coding MGP_CASTEiJ_T0035694.1 MGP_CASTEiJ_G0019431.1 mouse_genomes_project 12 108517753 108519030 - MGP_CASTEiJ_P0035694 Rd3l protein_coding protein_coding MGP_CASTEiJ_T0035695.1 MGP_CASTEiJ_G0019431.1 mouse_genomes_project 12 108517755 108519672 - MGP_CASTEiJ_P0035695 Rd3l protein_coding protein_coding MGP_CASTEiJ_T0012468.1 MGP_CASTEiJ_G0010631.1 mouse_genomes_project 12 73976697 73977044 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000062.1 MGP_CASTEiJ_G0000050.1 mouse_genomes_project 12 110451380 110477239 - MGP_CASTEiJ_P0000062 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034553.1 MGP_CASTEiJ_G0019068.1 mouse_genomes_project 12 55502424 55602097 + Lrfn5 protein_coding processed_transcript MGP_CASTEiJ_T0034554.1 MGP_CASTEiJ_G0019068.1 mouse_genomes_project 12 55502441 55667564 + Lrfn5 protein_coding processed_transcript MGP_CASTEiJ_T0034555.1 MGP_CASTEiJ_G0019068.1 mouse_genomes_project 12 55503222 55860038 + MGP_CASTEiJ_P0034555 Lrfn5 protein_coding protein_coding MGP_CASTEiJ_T0034556.1 MGP_CASTEiJ_G0019068.1 mouse_genomes_project 12 55503222 55842169 + MGP_CASTEiJ_P0034556 Lrfn5 protein_coding protein_coding MGP_CASTEiJ_T0034557.1 MGP_CASTEiJ_G0019068.1 mouse_genomes_project 12 55858383 55860453 + Lrfn5 protein_coding retained_intron MGP_CASTEiJ_T0035097.1 MGP_CASTEiJ_G0019248.1 mouse_genomes_project 12 80421651 80459485 - MGP_CASTEiJ_P0035097 Mlh3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035098.1 MGP_CASTEiJ_G0019248.1 mouse_genomes_project 12 80421668 80459481 - MGP_CASTEiJ_P0035098 Mlh3 protein_coding protein_coding MGP_CASTEiJ_T0035099.1 MGP_CASTEiJ_G0019248.1 mouse_genomes_project 12 80421668 80459454 - MGP_CASTEiJ_P0035099 Mlh3 protein_coding protein_coding MGP_CASTEiJ_T0035705.1 MGP_CASTEiJ_G0019435.1 mouse_genomes_project 12 109066479 109077431 - MGP_CASTEiJ_P0035705 Tmem179 protein_coding protein_coding MGP_CASTEiJ_T0035730.1 MGP_CASTEiJ_G0019446.1 mouse_genomes_project 12 109434912 109445853 - MGP_CASTEiJ_P0035730 Gpr132 protein_coding protein_coding MGP_CASTEiJ_T0035058.1 MGP_CASTEiJ_G0019238.1 mouse_genomes_project 12 79945924 80043382 - MGP_CASTEiJ_P0035058 Ltbp2 protein_coding protein_coding MGP_CASTEiJ_T0035059.1 MGP_CASTEiJ_G0019238.1 mouse_genomes_project 12 79945925 80043345 - MGP_CASTEiJ_P0035059 Ltbp2 protein_coding protein_coding MGP_CASTEiJ_T0035060.1 MGP_CASTEiJ_G0019238.1 mouse_genomes_project 12 79946041 80043329 - MGP_CASTEiJ_P0035060 Ltbp2 protein_coding protein_coding MGP_CASTEiJ_T0035061.1 MGP_CASTEiJ_G0019238.1 mouse_genomes_project 12 79947907 79954559 - MGP_CASTEiJ_P0035061 Ltbp2 protein_coding protein_coding MGP_CASTEiJ_T0035062.1 MGP_CASTEiJ_G0019238.1 mouse_genomes_project 12 79949080 79955686 - MGP_CASTEiJ_P0035062 Ltbp2 protein_coding protein_coding MGP_CASTEiJ_T0035063.1 MGP_CASTEiJ_G0019238.1 mouse_genomes_project 12 79954574 79962168 - MGP_CASTEiJ_P0035063 Ltbp2 protein_coding protein_coding MGP_CASTEiJ_T0035064.1 MGP_CASTEiJ_G0019238.1 mouse_genomes_project 12 79970419 80043341 - Ltbp2 protein_coding retained_intron MGP_CASTEiJ_T0035399.1 MGP_CASTEiJ_G0019333.1 mouse_genomes_project 12 98755678 99012051 + MGP_CASTEiJ_P0035399 Unc79 protein_coding protein_coding MGP_CASTEiJ_T0035400.1 MGP_CASTEiJ_G0019333.1 mouse_genomes_project 12 98756885 99011663 + MGP_CASTEiJ_P0035400 Unc79 protein_coding protein_coding MGP_CASTEiJ_T0035401.1 MGP_CASTEiJ_G0019333.1 mouse_genomes_project 12 98814873 98819270 + Unc79 protein_coding retained_intron MGP_CASTEiJ_T0035402.1 MGP_CASTEiJ_G0019333.1 mouse_genomes_project 12 98815645 98878763 + MGP_CASTEiJ_P0035402 Unc79 protein_coding protein_coding MGP_CASTEiJ_T0035403.1 MGP_CASTEiJ_G0019333.1 mouse_genomes_project 12 98815696 99012048 + MGP_CASTEiJ_P0035403 Unc79 protein_coding protein_coding MGP_CASTEiJ_T0035404.1 MGP_CASTEiJ_G0019333.1 mouse_genomes_project 12 98815753 99012114 + MGP_CASTEiJ_P0035404 Unc79 protein_coding protein_coding MGP_CASTEiJ_T0035405.1 MGP_CASTEiJ_G0019333.1 mouse_genomes_project 12 98878413 98891326 + Unc79 protein_coding retained_intron MGP_CASTEiJ_T0035406.1 MGP_CASTEiJ_G0019333.1 mouse_genomes_project 12 98917560 98934141 + MGP_CASTEiJ_P0035406 Unc79 protein_coding protein_coding MGP_CASTEiJ_T0035407.1 MGP_CASTEiJ_G0019333.1 mouse_genomes_project 12 98958898 98970553 + MGP_CASTEiJ_P0035407 Unc79 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0100529.1 MGP_CASTEiJ_G0037442.1 mouse_genomes_project 12 106090348 106090421 + AF357425 snoRNA snoRNA MGP_CASTEiJ_T0009643.1 MGP_CASTEiJ_G0007831.1 mouse_genomes_project 12 107118390 107118493 + Gm27299 miRNA miRNA MGP_CASTEiJ_T0035100.1 MGP_CASTEiJ_G0019249.1 mouse_genomes_project 12 80461292 80469380 - MGP_CASTEiJ_P0035100 Acyp1 protein_coding protein_coding MGP_CASTEiJ_T0035101.1 MGP_CASTEiJ_G0019249.1 mouse_genomes_project 12 80461303 80469251 - MGP_CASTEiJ_P0035101 Acyp1 protein_coding protein_coding MGP_CASTEiJ_T0035102.1 MGP_CASTEiJ_G0019249.1 mouse_genomes_project 12 80461440 80479487 - MGP_CASTEiJ_P0035102 Acyp1 protein_coding protein_coding MGP_CASTEiJ_T0035103.1 MGP_CASTEiJ_G0019249.1 mouse_genomes_project 12 80467837 80469363 - MGP_CASTEiJ_P0035103 Acyp1 protein_coding protein_coding MGP_CASTEiJ_T0035364.1 MGP_CASTEiJ_G0019318.1 mouse_genomes_project 12 97716462 97749894 + MGP_CASTEiJ_P0035364 Cpsf2 protein_coding protein_coding MGP_CASTEiJ_T0035365.1 MGP_CASTEiJ_G0019318.1 mouse_genomes_project 12 97716724 97776929 + MGP_CASTEiJ_P0035365 Cpsf2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0098489.1 MGP_CASTEiJ_G0035420.1 mouse_genomes_project 12 99996702 99996810 + Gm23289 rRNA rRNA MGP_CASTEiJ_T0000229.1 MGP_CASTEiJ_G0000178.1 mouse_genomes_project 12 110673257 110673701 - IG_V_pseudogene IG_V_pseudogene MGP_CASTEiJ_T0011005.1 MGP_CASTEiJ_G0009193.1 mouse_genomes_project 12 91988328 91988617 - Gm26480 misc_RNA misc_RNA MGP_CASTEiJ_T0009552.1 MGP_CASTEiJ_G0007740.1 mouse_genomes_project 12 64108376 64108490 - Mir681 miRNA miRNA MGP_CASTEiJ_T0006290.1 MGP_CASTEiJ_G0005255.1 mouse_genomes_project 12 102909794 102943824 - 4933406K04Rik lincRNA lincRNA MGP_CASTEiJ_T0006291.1 MGP_CASTEiJ_G0005255.1 mouse_genomes_project 12 102920294 102943786 - 4933406K04Rik lincRNA lincRNA MGP_CASTEiJ_T0006292.1 MGP_CASTEiJ_G0005255.1 mouse_genomes_project 12 102927530 102943795 - 4933406K04Rik lincRNA lincRNA MGP_CASTEiJ_T0006293.1 MGP_CASTEiJ_G0005255.1 mouse_genomes_project 12 102933617 102943824 - 4933406K04Rik lincRNA lincRNA MGP_CASTEiJ_T0035018.1 MGP_CASTEiJ_G0019224.1 mouse_genomes_project 12 79431667 79459185 + MGP_CASTEiJ_P0035018 Zfp410 protein_coding protein_coding MGP_CASTEiJ_T0035019.1 MGP_CASTEiJ_G0019224.1 mouse_genomes_project 12 79431701 79455624 + MGP_CASTEiJ_P0035019 Zfp410 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035486.1 MGP_CASTEiJ_G0019367.1 mouse_genomes_project 12 101087464 101096996 + MGP_CASTEiJ_P0035486 Glrx5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0035487.1 MGP_CASTEiJ_G0019367.1 mouse_genomes_project 12 101087634 101095643 + MGP_CASTEiJ_P0035487 Glrx5 protein_coding protein_coding MGP_CASTEiJ_T0034036.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5776091 5861437 + MGP_CASTEiJ_P0034036 Pum2 protein_coding protein_coding MGP_CASTEiJ_T0034037.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5776091 5862564 + MGP_CASTEiJ_P0034037 Pum2 protein_coding protein_coding MGP_CASTEiJ_T0034038.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5776102 5859508 + MGP_CASTEiJ_P0034038 Pum2 protein_coding protein_coding MGP_CASTEiJ_T0034039.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5776181 5862544 + MGP_CASTEiJ_P0034039 Pum2 protein_coding protein_coding MGP_CASTEiJ_T0034040.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5776206 5858908 + MGP_CASTEiJ_P0034040 Pum2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034041.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5776216 5810121 + Pum2 protein_coding processed_transcript MGP_CASTEiJ_T0034042.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5776232 5862540 + MGP_CASTEiJ_P0034042 Pum2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034043.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5776378 5859189 + MGP_CASTEiJ_P0034043 Pum2 protein_coding protein_coding MGP_CASTEiJ_T0034044.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5776427 5859216 + MGP_CASTEiJ_P0034044 Pum2 protein_coding protein_coding MGP_CASTEiJ_T0034045.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5776638 5862564 + MGP_CASTEiJ_P0034045 Pum2 protein_coding protein_coding MGP_CASTEiJ_T0034046.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5776693 5816399 + MGP_CASTEiJ_P0034046 Pum2 protein_coding protein_coding MGP_CASTEiJ_T0034047.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5776722 5816168 + MGP_CASTEiJ_P0034047 Pum2 protein_coding protein_coding MGP_CASTEiJ_T0034048.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5779491 5812243 + MGP_CASTEiJ_P0034048 Pum2 protein_coding protein_coding MGP_CASTEiJ_T0034049.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5800656 5816682 + MGP_CASTEiJ_P0034049 Pum2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0034050.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5812978 5824773 + MGP_CASTEiJ_P0034050 Pum2 protein_coding protein_coding MGP_CASTEiJ_T0034051.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5832124 5857424 + MGP_CASTEiJ_P0034051 Pum2 protein_coding protein_coding MGP_CASTEiJ_T0034052.1 MGP_CASTEiJ_G0018890.1 mouse_genomes_project 12 5849883 5850803 + Pum2 protein_coding retained_intron MGP_CASTEiJ_T0034159.1 MGP_CASTEiJ_G0018929.1 mouse_genomes_project 12 16238206 16269881 - MGP_CASTEiJ_P0034159 Ywhaq protein_coding protein_coding MGP_CASTEiJ_T0034160.1 MGP_CASTEiJ_G0018929.1 mouse_genomes_project 12 16244692 16269118 - Ywhaq protein_coding processed_transcript MGP_CASTEiJ_T0034161.1 MGP_CASTEiJ_G0018929.1 mouse_genomes_project 12 16245396 16247861 - Ywhaq protein_coding retained_intron MGP_CASTEiJ_T0012442.1 MGP_CASTEiJ_G0010605.1 mouse_genomes_project 12 38414002 38417952 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003287.1 MGP_CASTEiJ_G0003029.1 mouse_genomes_project 12 63584373 63589829 - Gm15561 antisense antisense MGP_CASTEiJ_T0034426.1 MGP_CASTEiJ_G0019023.1 mouse_genomes_project 12 45375102 45465668 - MGP_CASTEiJ_P0034426 Hectd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0034427.1 MGP_CASTEiJ_G0019023.1 mouse_genomes_project 12 45375111 45465570 - MGP_CASTEiJ_P0034427 Hectd1 protein_coding protein_coding MGP_CASTEiJ_T0034428.1 MGP_CASTEiJ_G0019023.1 mouse_genomes_project 12 45375111 45465570 - MGP_CASTEiJ_P0034428 Hectd1 protein_coding protein_coding MGP_CASTEiJ_T0009544.1 MGP_CASTEiJ_G0007732.1 mouse_genomes_project 12 37701997 37702058 + Mir5627 miRNA miRNA MGP_CASTEiJ_T0034194.1 MGP_CASTEiJ_G0018941.1 mouse_genomes_project 12 19201176 19212724 + MGP_CASTEiJ_P0034194 Cmpk2 protein_coding protein_coding MGP_CASTEiJ_T0000077.1 MGP_CASTEiJ_G0000062.1 mouse_genomes_project 12 110843255 110843569 - MGP_CASTEiJ_P0000077 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000078.1 MGP_CASTEiJ_G0000062.1 mouse_genomes_project 12 110843255 110843675 - MGP_CASTEiJ_P0000078 IG_V_gene IG_V_gene MGP_CASTEiJ_T0034948.1 MGP_CASTEiJ_G0019205.1 mouse_genomes_project 12 78567878 78591852 + MGP_CASTEiJ_P0034948 Dcaf4 protein_coding protein_coding MGP_CASTEiJ_T0034231.1 MGP_CASTEiJ_G0018955.1 mouse_genomes_project 12 23455657 23462406 + MGP_CASTEiJ_P0034231 Tmem18 protein_coding protein_coding MGP_CASTEiJ_T0009565.1 MGP_CASTEiJ_G0007753.1 mouse_genomes_project 12 84821327 84821469 - Gm27313 miRNA miRNA MGP_CASTEiJ_T0099325.1 MGP_CASTEiJ_G0036238.1 mouse_genomes_project 12 89365852 89366012 + Gm23249 snRNA snRNA MGP_CASTEiJ_T0006332.1 MGP_CASTEiJ_G0005272.1 mouse_genomes_project 12 107305296 107308510 + 4921507G05Rik lincRNA lincRNA MGP_CASTEiJ_T0000067.1 MGP_CASTEiJ_G0000055.1 mouse_genomes_project 12 110640890 110641375 - MGP_CASTEiJ_P0000067 Ighv5-16 IG_V_gene IG_V_gene MGP_CASTEiJ_T0000068.1 MGP_CASTEiJ_G0000055.1 mouse_genomes_project 12 110640890 110641348 - MGP_CASTEiJ_P0000068 Ighv5-16 IG_V_gene IG_V_gene MGP_CASTEiJ_T0035589.1 MGP_CASTEiJ_G0019399.1 mouse_genomes_project 12 106042227 106053111 - MGP_CASTEiJ_P0035589 Rtl1 protein_coding protein_coding MGP_CASTEiJ_T0034988.1 MGP_CASTEiJ_G0019214.1 mouse_genomes_project 12 79058729 79065237 + MGP_CASTEiJ_P0034988 protein_coding protein_coding MGP_CASTEiJ_T0099298.1 MGP_CASTEiJ_G0036211.1 mouse_genomes_project 12 42620010 42620117 + Gm26454 snRNA snRNA MGP_CASTEiJ_T0034387.1 MGP_CASTEiJ_G0019007.1 mouse_genomes_project 12 34448863 35418622 + MGP_CASTEiJ_P0034387 Immp2l protein_coding protein_coding MGP_CASTEiJ_T0034388.1 MGP_CASTEiJ_G0019007.1 mouse_genomes_project 12 34448899 34497333 + Immp2l protein_coding retained_intron MGP_CASTEiJ_T0034389.1 MGP_CASTEiJ_G0019007.1 mouse_genomes_project 12 34448900 34543313 + Immp2l protein_coding retained_intron MGP_CASTEiJ_T0034390.1 MGP_CASTEiJ_G0019007.1 mouse_genomes_project 12 34449102 35418276 + MGP_CASTEiJ_P0034390 Immp2l protein_coding protein_coding MGP_CASTEiJ_T0034391.1 MGP_CASTEiJ_G0019007.1 mouse_genomes_project 12 34496759 34543299 + MGP_CASTEiJ_P0034391 Immp2l protein_coding protein_coding MGP_CASTEiJ_T0012449.1 MGP_CASTEiJ_G0010612.1 mouse_genomes_project 12 49054457 49054993 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016568.1 MGP_CASTEiJ_G0014550.1 mouse_genomes_project 12 96133264 96138817 + Gm10433 processed_transcript processed_transcript MGP_CASTEiJ_T0016569.1 MGP_CASTEiJ_G0014550.1 mouse_genomes_project 12 96134073 96138023 + Gm10433 processed_transcript processed_transcript MGP_CASTEiJ_T0034484.1 MGP_CASTEiJ_G0019049.1 mouse_genomes_project 12 49545414 49581283 + MGP_CASTEiJ_P0034484 Brms1l protein_coding protein_coding MGP_CASTEiJ_T0034485.1 MGP_CASTEiJ_G0019049.1 mouse_genomes_project 12 49545497 49565547 + MGP_CASTEiJ_P0034485 Brms1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0000025.1 MGP_CASTEiJ_G0000019.1 mouse_genomes_project 12 110155344 110155444 - MGP_CASTEiJ_P0000025 Ighd5-7 IG_D_gene IG_D_gene MGP_CASTEiJ_T0100498.1 MGP_CASTEiJ_G0037411.1 mouse_genomes_project 12 32961724 32961857 + Gm24434 snoRNA snoRNA MGP_CASTEiJ_T0040315.1 MGP_CASTEiJ_G0020977.1 mouse_genomes_project 15 7273798 7442344 + protein_coding retained_intron MGP_CASTEiJ_T0040316.1 MGP_CASTEiJ_G0020977.1 mouse_genomes_project 15 7273974 7461204 + protein_coding processed_transcript MGP_CASTEiJ_T0040317.1 MGP_CASTEiJ_G0020977.1 mouse_genomes_project 15 7274206 7461474 + MGP_CASTEiJ_P0040317 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040318.1 MGP_CASTEiJ_G0020977.1 mouse_genomes_project 15 7274215 7449966 + MGP_CASTEiJ_P0040318 protein_coding protein_coding MGP_CASTEiJ_T0040319.1 MGP_CASTEiJ_G0020977.1 mouse_genomes_project 15 7274341 7431873 + protein_coding retained_intron MGP_CASTEiJ_T0040320.1 MGP_CASTEiJ_G0020977.1 mouse_genomes_project 15 7310508 7431164 + protein_coding processed_transcript MGP_CASTEiJ_T0040321.1 MGP_CASTEiJ_G0020977.1 mouse_genomes_project 15 7313015 7431230 + MGP_CASTEiJ_P0040321 protein_coding protein_coding MGP_CASTEiJ_T0040322.1 MGP_CASTEiJ_G0020977.1 mouse_genomes_project 15 7321153 7458723 + MGP_CASTEiJ_P0040322 protein_coding protein_coding MGP_CASTEiJ_T0040323.1 MGP_CASTEiJ_G0020977.1 mouse_genomes_project 15 7321153 7462136 + MGP_CASTEiJ_P0040323 protein_coding protein_coding MGP_CASTEiJ_T0040324.1 MGP_CASTEiJ_G0020977.1 mouse_genomes_project 15 7321153 7454899 + MGP_CASTEiJ_P0040324 protein_coding protein_coding MGP_CASTEiJ_T0040325.1 MGP_CASTEiJ_G0020977.1 mouse_genomes_project 15 7350353 7434417 + MGP_CASTEiJ_P0040325 protein_coding protein_coding MGP_CASTEiJ_T0040326.1 MGP_CASTEiJ_G0020977.1 mouse_genomes_project 15 7425982 7434399 + MGP_CASTEiJ_P0040326 protein_coding protein_coding MGP_CASTEiJ_T0041849.1 MGP_CASTEiJ_G0021444.1 mouse_genomes_project 15 85858679 85884117 + MGP_CASTEiJ_P0041849 Fam118a protein_coding protein_coding MGP_CASTEiJ_T0040356.1 MGP_CASTEiJ_G0020988.1 mouse_genomes_project 15 8168166 8172457 - MGP_CASTEiJ_P0040356 Rxfp3 protein_coding protein_coding MGP_CASTEiJ_T0042238.1 MGP_CASTEiJ_G0021554.1 mouse_genomes_project 15 100111971 100114252 - MGP_CASTEiJ_P0042238 Lalba protein_coding protein_coding MGP_CASTEiJ_T0040808.1 MGP_CASTEiJ_G0021150.1 mouse_genomes_project 15 63240843 63298394 - MGP_CASTEiJ_P0040808 protein_coding protein_coding MGP_CASTEiJ_T0099427.1 MGP_CASTEiJ_G0036340.1 mouse_genomes_project 15 28872803 28872866 + Gm24487 snRNA snRNA MGP_CASTEiJ_T0040621.1 MGP_CASTEiJ_G0021074.1 mouse_genomes_project 15 38179363 38197236 + MGP_CASTEiJ_P0040621 Dcstamp protein_coding protein_coding MGP_CASTEiJ_T0012682.1 MGP_CASTEiJ_G0010845.1 mouse_genomes_project 15 5550903 5551203 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0042299.1 MGP_CASTEiJ_G0021580.1 mouse_genomes_project 15 100834786 100921132 + MGP_CASTEiJ_P0042299 Spats2 protein_coding protein_coding MGP_CASTEiJ_T0040207.1 MGP_CASTEiJ_G0020950.1 mouse_genomes_project 15 1994031 2008410 - MGP_CASTEiJ_P0040207 Card6 protein_coding protein_coding MGP_CASTEiJ_T0040208.1 MGP_CASTEiJ_G0020950.1 mouse_genomes_project 15 2004976 2008355 - MGP_CASTEiJ_P0040208 Card6 protein_coding protein_coding MGP_CASTEiJ_T0042123.1 MGP_CASTEiJ_G0021518.1 mouse_genomes_project 15 95935284 95947926 - MGP_CASTEiJ_P0042123 Twf1 protein_coding protein_coding MGP_CASTEiJ_T0042124.1 MGP_CASTEiJ_G0021518.1 mouse_genomes_project 15 95937737 95943499 - Twf1 protein_coding processed_transcript MGP_CASTEiJ_T0042125.1 MGP_CASTEiJ_G0021518.1 mouse_genomes_project 15 95939099 95939466 - Twf1 protein_coding retained_intron MGP_CASTEiJ_T0042126.1 MGP_CASTEiJ_G0021518.1 mouse_genomes_project 15 95942465 95947936 - MGP_CASTEiJ_P0042126 Twf1 protein_coding protein_coding MGP_CASTEiJ_T0040787.1 MGP_CASTEiJ_G0021140.1 mouse_genomes_project 15 58619336 58634134 + Sqle protein_coding retained_intron MGP_CASTEiJ_T0040788.1 MGP_CASTEiJ_G0021140.1 mouse_genomes_project 15 58619340 58637531 + MGP_CASTEiJ_P0040788 Sqle protein_coding protein_coding MGP_CASTEiJ_T0040789.1 MGP_CASTEiJ_G0021140.1 mouse_genomes_project 15 58619366 58637531 + MGP_CASTEiJ_P0040789 Sqle protein_coding protein_coding MGP_CASTEiJ_T0040791.1 MGP_CASTEiJ_G0021140.1 mouse_genomes_project 15 58630723 58632391 + Sqle protein_coding retained_intron MGP_CASTEiJ_T0040970.1 MGP_CASTEiJ_G0021190.1 mouse_genomes_project 15 74659848 74663284 + MGP_CASTEiJ_P0040970 Them6 protein_coding protein_coding MGP_CASTEiJ_T0040647.1 MGP_CASTEiJ_G0021086.1 mouse_genomes_project 15 42827779 42873198 + MGP_CASTEiJ_P0040647 Trhr protein_coding protein_coding MGP_CASTEiJ_T0040648.1 MGP_CASTEiJ_G0021086.1 mouse_genomes_project 15 42827877 42871449 + MGP_CASTEiJ_P0040648 Trhr protein_coding protein_coding MGP_CASTEiJ_T0012713.1 MGP_CASTEiJ_G0010876.1 mouse_genomes_project 15 74657429 74657573 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040992.1 MGP_CASTEiJ_G0021202.1 mouse_genomes_project 15 74834414 74855741 - 2010109I03Rik protein_coding processed_transcript MGP_CASTEiJ_T0040993.1 MGP_CASTEiJ_G0021202.1 mouse_genomes_project 15 74835703 74839079 - MGP_CASTEiJ_P0040993 2010109I03Rik protein_coding protein_coding MGP_CASTEiJ_T0042008.1 MGP_CASTEiJ_G0021488.1 mouse_genomes_project 15 90456921 90458725 - MGP_CASTEiJ_P0042008 Odf3b protein_coding protein_coding MGP_CASTEiJ_T0042009.1 MGP_CASTEiJ_G0021488.1 mouse_genomes_project 15 90456977 90458649 - MGP_CASTEiJ_P0042009 Odf3b protein_coding unknown_likely_coding MGP_CASTEiJ_T0040684.1 MGP_CASTEiJ_G0021098.1 mouse_genomes_project 15 51029205 51034817 + MGP_CASTEiJ_P0040684 Aard protein_coding protein_coding MGP_CASTEiJ_T0000901.1 MGP_CASTEiJ_G0000840.1 mouse_genomes_project 15 62948198 62962268 + TEC TEC MGP_CASTEiJ_T0009780.1 MGP_CASTEiJ_G0007968.1 mouse_genomes_project 15 49793637 49793727 - Mir1907 miRNA miRNA MGP_CASTEiJ_T0042149.1 MGP_CASTEiJ_G0021530.1 mouse_genomes_project 15 98435062 98539059 - MGP_CASTEiJ_P0042149 Slc38a4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042150.1 MGP_CASTEiJ_G0021530.1 mouse_genomes_project 15 98512484 98551920 - MGP_CASTEiJ_P0042150 Slc38a4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0016715.1 MGP_CASTEiJ_G0014609.1 mouse_genomes_project 15 63621643 63624239 + Gm20717 processed_transcript processed_transcript MGP_CASTEiJ_T0006622.1 MGP_CASTEiJ_G0005477.1 mouse_genomes_project 15 97498010 97526084 - D030018L15Rik lincRNA lincRNA MGP_CASTEiJ_T0006623.1 MGP_CASTEiJ_G0005477.1 mouse_genomes_project 15 97498010 97527329 - D030018L15Rik lincRNA lincRNA MGP_CASTEiJ_T0006624.1 MGP_CASTEiJ_G0005477.1 mouse_genomes_project 15 97521283 97527447 - D030018L15Rik lincRNA lincRNA MGP_CASTEiJ_T0003479.1 MGP_CASTEiJ_G0003164.1 mouse_genomes_project 15 35648183 35649422 - Gm16136 antisense antisense MGP_CASTEiJ_T0003480.1 MGP_CASTEiJ_G0003164.1 mouse_genomes_project 15 35648201 35649572 - Gm16136 antisense antisense MGP_CASTEiJ_T0003481.1 MGP_CASTEiJ_G0003164.1 mouse_genomes_project 15 35648917 35649404 - Gm16136 antisense antisense MGP_CASTEiJ_T0042520.1 MGP_CASTEiJ_G0021662.1 mouse_genomes_project 15 104233993 104245637 + MGP_CASTEiJ_P0042520 Zfp740 protein_coding protein_coding MGP_CASTEiJ_T0042521.1 MGP_CASTEiJ_G0021662.1 mouse_genomes_project 15 104234004 104245630 + MGP_CASTEiJ_P0042521 Zfp740 protein_coding protein_coding MGP_CASTEiJ_T0042522.1 MGP_CASTEiJ_G0021662.1 mouse_genomes_project 15 104234036 104238671 + MGP_CASTEiJ_P0042522 Zfp740 protein_coding protein_coding MGP_CASTEiJ_T0042523.1 MGP_CASTEiJ_G0021662.1 mouse_genomes_project 15 104234054 104239193 + MGP_CASTEiJ_P0042523 Zfp740 protein_coding protein_coding MGP_CASTEiJ_T0042524.1 MGP_CASTEiJ_G0021662.1 mouse_genomes_project 15 104234961 104245638 + MGP_CASTEiJ_P0042524 Zfp740 protein_coding protein_coding MGP_CASTEiJ_T0042525.1 MGP_CASTEiJ_G0021662.1 mouse_genomes_project 15 104235098 104239107 + MGP_CASTEiJ_P0042525 Zfp740 protein_coding protein_coding MGP_CASTEiJ_T0042526.1 MGP_CASTEiJ_G0021662.1 mouse_genomes_project 15 104235132 104239095 + MGP_CASTEiJ_P0042526 Zfp740 protein_coding protein_coding MGP_CASTEiJ_T0042527.1 MGP_CASTEiJ_G0021662.1 mouse_genomes_project 15 104237946 104238977 + Zfp740 protein_coding retained_intron MGP_CASTEiJ_T0042528.1 MGP_CASTEiJ_G0021662.1 mouse_genomes_project 15 104238590 104245633 + Zfp740 protein_coding retained_intron MGP_CASTEiJ_T0100666.1 MGP_CASTEiJ_G0037579.1 mouse_genomes_project 15 28322575 28322753 - Gm26163 snoRNA snoRNA MGP_CASTEiJ_T0098516.1 MGP_CASTEiJ_G0035447.1 mouse_genomes_project 15 28861062 28861181 + Gm23956 rRNA rRNA MGP_CASTEiJ_T0042623.1 MGP_CASTEiJ_G0021685.1 mouse_genomes_project 15 105052375 105055628 + MGP_CASTEiJ_P0042623 Hoxc11 protein_coding protein_coding MGP_CASTEiJ_T0016729.1 MGP_CASTEiJ_G0014620.1 mouse_genomes_project 15 90125768 90129678 - 1810021B22Rik processed_transcript antisense MGP_CASTEiJ_T0016730.1 MGP_CASTEiJ_G0014620.1 mouse_genomes_project 15 90125768 90128825 - 1810021B22Rik processed_transcript lincRNA MGP_CASTEiJ_T0016731.1 MGP_CASTEiJ_G0014620.1 mouse_genomes_project 15 90125770 90130381 - 1810021B22Rik processed_transcript lincRNA MGP_CASTEiJ_T0016732.1 MGP_CASTEiJ_G0014620.1 mouse_genomes_project 15 90125770 90129740 - 1810021B22Rik processed_transcript antisense MGP_CASTEiJ_T0016733.1 MGP_CASTEiJ_G0014620.1 mouse_genomes_project 15 90125770 90129678 - 1810021B22Rik processed_transcript antisense MGP_CASTEiJ_T0040600.1 MGP_CASTEiJ_G0021065.1 mouse_genomes_project 15 36797748 36803839 - MGP_CASTEiJ_P0040600 Klf10 protein_coding protein_coding MGP_CASTEiJ_T0041387.1 MGP_CASTEiJ_G0021313.1 mouse_genomes_project 15 79166787 79173294 - MGP_CASTEiJ_P0041387 Lgals2 protein_coding protein_coding MGP_CASTEiJ_T0099466.1 MGP_CASTEiJ_G0036379.1 mouse_genomes_project 15 98181639 98181747 + Gm22045 snRNA snRNA MGP_CASTEiJ_T0098521.1 MGP_CASTEiJ_G0035452.1 mouse_genomes_project 15 88147439 88147543 + n-R5s42 rRNA rRNA MGP_CASTEiJ_T0042634.1 MGP_CASTEiJ_G0021691.1 mouse_genomes_project 15 105120535 105140993 + MGP_CASTEiJ_P0042634 Hoxc4 protein_coding protein_coding MGP_CASTEiJ_T0042635.1 MGP_CASTEiJ_G0021691.1 mouse_genomes_project 15 105138984 105141440 + MGP_CASTEiJ_P0042635 Hoxc4 protein_coding protein_coding MGP_CASTEiJ_T0040986.1 MGP_CASTEiJ_G0021199.1 mouse_genomes_project 15 74774650 74778100 - protein_coding processed_transcript MGP_CASTEiJ_T0040987.1 MGP_CASTEiJ_G0021199.1 mouse_genomes_project 15 74774650 74778100 - protein_coding processed_transcript MGP_CASTEiJ_T0040988.1 MGP_CASTEiJ_G0021199.1 mouse_genomes_project 15 74774650 74783568 - MGP_CASTEiJ_P0040988 protein_coding protein_coding MGP_CASTEiJ_T0099471.1 MGP_CASTEiJ_G0036384.1 mouse_genomes_project 15 104517371 104517470 + Gm24128 snRNA snRNA MGP_CASTEiJ_T0040305.1 MGP_CASTEiJ_G0020974.1 mouse_genomes_project 15 6519122 6543965 + MGP_CASTEiJ_P0040305 Capsl protein_coding protein_coding MGP_CASTEiJ_T0040549.1 MGP_CASTEiJ_G0021051.1 mouse_genomes_project 15 34620688 34666232 - MGP_CASTEiJ_P0040549 Rnf19a protein_coding protein_coding MGP_CASTEiJ_T0040855.1 MGP_CASTEiJ_G0021161.1 mouse_genomes_project 15 65495910 65808647 - MGP_CASTEiJ_P0040855 Kcnq3 protein_coding protein_coding MGP_CASTEiJ_T0040856.1 MGP_CASTEiJ_G0021161.1 mouse_genomes_project 15 65534685 65608915 - Kcnq3 protein_coding processed_transcript MGP_CASTEiJ_T0040857.1 MGP_CASTEiJ_G0021161.1 mouse_genomes_project 15 65805491 65808474 - Kcnq3 protein_coding retained_intron MGP_CASTEiJ_T0041832.1 MGP_CASTEiJ_G0021437.1 mouse_genomes_project 15 85492740 85518283 + MGP_CASTEiJ_P0041832 Prr5 protein_coding protein_coding MGP_CASTEiJ_T0042537.1 MGP_CASTEiJ_G0021665.1 mouse_genomes_project 15 104319617 104321906 + MGP_CASTEiJ_P0042537 Mfsd5 protein_coding protein_coding MGP_CASTEiJ_T0042252.1 MGP_CASTEiJ_G0021558.1 mouse_genomes_project 15 100213962 100233741 + MGP_CASTEiJ_P0042252 4930415O20Rik protein_coding protein_coding MGP_CASTEiJ_T0040994.1 MGP_CASTEiJ_G0021203.1 mouse_genomes_project 15 74912552 74917406 + MGP_CASTEiJ_P0040994 Ly6e protein_coding protein_coding MGP_CASTEiJ_T0040995.1 MGP_CASTEiJ_G0021203.1 mouse_genomes_project 15 74912552 74917404 + MGP_CASTEiJ_P0040995 Ly6e protein_coding protein_coding MGP_CASTEiJ_T0040996.1 MGP_CASTEiJ_G0021203.1 mouse_genomes_project 15 74912572 74917406 + MGP_CASTEiJ_P0040996 Ly6e protein_coding protein_coding MGP_CASTEiJ_T0040997.1 MGP_CASTEiJ_G0021203.1 mouse_genomes_project 15 74912606 74916277 + MGP_CASTEiJ_P0040997 Ly6e protein_coding protein_coding MGP_CASTEiJ_T0040998.1 MGP_CASTEiJ_G0021203.1 mouse_genomes_project 15 74912642 74915890 + MGP_CASTEiJ_P0040998 Ly6e protein_coding protein_coding MGP_CASTEiJ_T0040999.1 MGP_CASTEiJ_G0021203.1 mouse_genomes_project 15 74912664 74916257 + MGP_CASTEiJ_P0040999 Ly6e protein_coding protein_coding MGP_CASTEiJ_T0041000.1 MGP_CASTEiJ_G0021203.1 mouse_genomes_project 15 74912678 74916156 + MGP_CASTEiJ_P0041000 Ly6e protein_coding protein_coding MGP_CASTEiJ_T0041001.1 MGP_CASTEiJ_G0021203.1 mouse_genomes_project 15 74912686 74916228 + MGP_CASTEiJ_P0041001 Ly6e protein_coding protein_coding MGP_CASTEiJ_T0041002.1 MGP_CASTEiJ_G0021203.1 mouse_genomes_project 15 74912741 74916094 + MGP_CASTEiJ_P0041002 Ly6e protein_coding protein_coding MGP_CASTEiJ_T0041003.1 MGP_CASTEiJ_G0021203.1 mouse_genomes_project 15 74912760 74916161 + MGP_CASTEiJ_P0041003 Ly6e protein_coding protein_coding MGP_CASTEiJ_T0041004.1 MGP_CASTEiJ_G0021203.1 mouse_genomes_project 15 74913153 74916832 + MGP_CASTEiJ_P0041004 Ly6e protein_coding protein_coding MGP_CASTEiJ_T0041005.1 MGP_CASTEiJ_G0021203.1 mouse_genomes_project 15 74913166 74916530 + Ly6e protein_coding retained_intron MGP_CASTEiJ_T0041006.1 MGP_CASTEiJ_G0021203.1 mouse_genomes_project 15 74913168 74916832 + Ly6e protein_coding retained_intron MGP_CASTEiJ_T0041007.1 MGP_CASTEiJ_G0021203.1 mouse_genomes_project 15 74913172 74916111 + MGP_CASTEiJ_P0041007 Ly6e protein_coding protein_coding MGP_CASTEiJ_T0041008.1 MGP_CASTEiJ_G0021203.1 mouse_genomes_project 15 74913183 74913998 + Ly6e protein_coding retained_intron MGP_CASTEiJ_T0041009.1 MGP_CASTEiJ_G0021203.1 mouse_genomes_project 15 74914055 74916327 + MGP_CASTEiJ_P0041009 Ly6e protein_coding protein_coding MGP_CASTEiJ_T0040642.1 MGP_CASTEiJ_G0021082.1 mouse_genomes_project 15 41636982 41791028 - MGP_CASTEiJ_P0040642 Rspo2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041042.1 MGP_CASTEiJ_G0021217.1 mouse_genomes_project 15 75849783 75936831 - MGP_CASTEiJ_P0041042 Zc3h3 protein_coding protein_coding MGP_CASTEiJ_T0042214.1 MGP_CASTEiJ_G0021543.1 mouse_genomes_project 15 99725989 99757296 - MGP_CASTEiJ_P0042214 Asb8 protein_coding protein_coding MGP_CASTEiJ_T0042215.1 MGP_CASTEiJ_G0021543.1 mouse_genomes_project 15 99727067 99737967 - MGP_CASTEiJ_P0042215 Asb8 protein_coding protein_coding MGP_CASTEiJ_T0042216.1 MGP_CASTEiJ_G0021543.1 mouse_genomes_project 15 99727067 99757231 - MGP_CASTEiJ_P0042216 Asb8 protein_coding protein_coding MGP_CASTEiJ_T0042217.1 MGP_CASTEiJ_G0021543.1 mouse_genomes_project 15 99727067 99738014 - MGP_CASTEiJ_P0042217 Asb8 protein_coding protein_coding MGP_CASTEiJ_T0040307.1 MGP_CASTEiJ_G0020976.1 mouse_genomes_project 15 6663263 6686179 - MGP_CASTEiJ_P0040307 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040308.1 MGP_CASTEiJ_G0020976.1 mouse_genomes_project 15 6663263 6849252 - MGP_CASTEiJ_P0040308 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040309.1 MGP_CASTEiJ_G0020976.1 mouse_genomes_project 15 6663267 6849321 - MGP_CASTEiJ_P0040309 protein_coding protein_coding MGP_CASTEiJ_T0040310.1 MGP_CASTEiJ_G0020976.1 mouse_genomes_project 15 6687339 6849252 - MGP_CASTEiJ_P0040310 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040311.1 MGP_CASTEiJ_G0020976.1 mouse_genomes_project 15 6753808 6849351 - MGP_CASTEiJ_P0040311 protein_coding protein_coding MGP_CASTEiJ_T0040312.1 MGP_CASTEiJ_G0020976.1 mouse_genomes_project 15 6776171 6849303 - MGP_CASTEiJ_P0040312 protein_coding protein_coding MGP_CASTEiJ_T0040313.1 MGP_CASTEiJ_G0020976.1 mouse_genomes_project 15 6798711 6849303 - MGP_CASTEiJ_P0040313 protein_coding protein_coding MGP_CASTEiJ_T0040314.1 MGP_CASTEiJ_G0020976.1 mouse_genomes_project 15 6798714 6849260 - MGP_CASTEiJ_P0040314 protein_coding protein_coding MGP_CASTEiJ_T0041269.1 MGP_CASTEiJ_G0021269.1 mouse_genomes_project 15 76864530 76871831 - MGP_CASTEiJ_P0041269 Lrrc24 protein_coding protein_coding MGP_CASTEiJ_T0041270.1 MGP_CASTEiJ_G0021269.1 mouse_genomes_project 15 76865461 76867669 - Lrrc24 protein_coding retained_intron MGP_CASTEiJ_T0041271.1 MGP_CASTEiJ_G0021269.1 mouse_genomes_project 15 76869283 76871817 - Lrrc24 protein_coding retained_intron MGP_CASTEiJ_T0041272.1 MGP_CASTEiJ_G0021269.1 mouse_genomes_project 15 76871123 76873505 - MGP_CASTEiJ_P0041272 Lrrc24 protein_coding protein_coding MGP_CASTEiJ_T0042460.1 MGP_CASTEiJ_G0021624.1 mouse_genomes_project 15 102954290 102958509 - MGP_CASTEiJ_P0042460 Fignl2 protein_coding protein_coding MGP_CASTEiJ_T0040968.1 MGP_CASTEiJ_G0021188.1 mouse_genomes_project 15 74641126 74648372 - MGP_CASTEiJ_P0040968 Jrk protein_coding protein_coding MGP_CASTEiJ_T0041246.1 MGP_CASTEiJ_G0021264.1 mouse_genomes_project 15 76816487 76844439 + MGP_CASTEiJ_P0041246 Ppp1r16a protein_coding protein_coding MGP_CASTEiJ_T0041247.1 MGP_CASTEiJ_G0021264.1 mouse_genomes_project 15 76816519 76840327 + Ppp1r16a protein_coding processed_transcript MGP_CASTEiJ_T0041248.1 MGP_CASTEiJ_G0021264.1 mouse_genomes_project 15 76838698 76839874 + Ppp1r16a protein_coding processed_transcript MGP_CASTEiJ_T0041249.1 MGP_CASTEiJ_G0021264.1 mouse_genomes_project 15 76839924 76844439 + Ppp1r16a protein_coding retained_intron MGP_CASTEiJ_T0041250.1 MGP_CASTEiJ_G0021264.1 mouse_genomes_project 15 76840046 76844435 + MGP_CASTEiJ_P0041250 Ppp1r16a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041251.1 MGP_CASTEiJ_G0021264.1 mouse_genomes_project 15 76840950 76842869 + Ppp1r16a protein_coding retained_intron MGP_CASTEiJ_T0041252.1 MGP_CASTEiJ_G0021264.1 mouse_genomes_project 15 76840965 76843033 + MGP_CASTEiJ_P0041252 Ppp1r16a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041253.1 MGP_CASTEiJ_G0021264.1 mouse_genomes_project 15 76841208 76842013 + Ppp1r16a protein_coding retained_intron MGP_CASTEiJ_T0041254.1 MGP_CASTEiJ_G0021264.1 mouse_genomes_project 15 76842327 76844439 + Ppp1r16a protein_coding retained_intron MGP_CASTEiJ_T0041255.1 MGP_CASTEiJ_G0021264.1 mouse_genomes_project 15 76842436 76844439 + Ppp1r16a protein_coding retained_intron MGP_CASTEiJ_T0042580.1 MGP_CASTEiJ_G0021676.1 mouse_genomes_project 15 104570678 104570843 + MGP_CASTEiJ_P0042580 Gm10337 protein_coding protein_coding MGP_CASTEiJ_T0099472.1 MGP_CASTEiJ_G0036385.1 mouse_genomes_project 15 104705962 104706069 - Gm25141 snRNA snRNA MGP_CASTEiJ_T0099426.1 MGP_CASTEiJ_G0036339.1 mouse_genomes_project 15 22798506 22798663 - Gm22810 snRNA snRNA MGP_CASTEiJ_T0041290.1 MGP_CASTEiJ_G0021277.1 mouse_genomes_project 15 77172328 77212249 - MGP_CASTEiJ_P0041290 Mb protein_coding protein_coding MGP_CASTEiJ_T0041291.1 MGP_CASTEiJ_G0021277.1 mouse_genomes_project 15 77172328 77180038 - MGP_CASTEiJ_P0041291 Mb protein_coding protein_coding MGP_CASTEiJ_T0041292.1 MGP_CASTEiJ_G0021277.1 mouse_genomes_project 15 77172328 77179978 - MGP_CASTEiJ_P0041292 Mb protein_coding protein_coding MGP_CASTEiJ_T0099460.1 MGP_CASTEiJ_G0036373.1 mouse_genomes_project 15 87146155 87146259 - Gm22818 snRNA snRNA MGP_CASTEiJ_T0041074.1 MGP_CASTEiJ_G0021227.1 mouse_genomes_project 15 76089227 76091811 - MGP_CASTEiJ_P0041074 Ccdc166 protein_coding protein_coding MGP_CASTEiJ_T0041075.1 MGP_CASTEiJ_G0021227.1 mouse_genomes_project 15 76090122 76091798 - MGP_CASTEiJ_P0041075 Ccdc166 protein_coding protein_coding MGP_CASTEiJ_T0042137.1 MGP_CASTEiJ_G0021525.1 mouse_genomes_project 15 97769912 97841729 + MGP_CASTEiJ_P0042137 Arid2 protein_coding protein_coding MGP_CASTEiJ_T0042138.1 MGP_CASTEiJ_G0021525.1 mouse_genomes_project 15 97769961 97896185 + MGP_CASTEiJ_P0042138 Arid2 protein_coding protein_coding MGP_CASTEiJ_T0042139.1 MGP_CASTEiJ_G0021525.1 mouse_genomes_project 15 97770039 97872384 + MGP_CASTEiJ_P0042139 Arid2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042140.1 MGP_CASTEiJ_G0021525.1 mouse_genomes_project 15 97846522 97849495 + Arid2 protein_coding retained_intron MGP_CASTEiJ_T0042141.1 MGP_CASTEiJ_G0021525.1 mouse_genomes_project 15 97862507 97894794 + Arid2 protein_coding retained_intron MGP_CASTEiJ_T0042622.1 MGP_CASTEiJ_G0021684.1 mouse_genomes_project 15 105033086 105034937 + MGP_CASTEiJ_P0042622 Hoxc12 protein_coding protein_coding MGP_CASTEiJ_T0040298.1 MGP_CASTEiJ_G0020971.1 mouse_genomes_project 15 6172981 6235256 + MGP_CASTEiJ_P0040298 Lmbrd2 protein_coding protein_coding MGP_CASTEiJ_T0040979.1 MGP_CASTEiJ_G0021195.1 mouse_genomes_project 15 74701359 74702931 - MGP_CASTEiJ_P0040979 Ly6d protein_coding protein_coding MGP_CASTEiJ_T0040209.1 MGP_CASTEiJ_G0020951.1 mouse_genomes_project 15 2016478 2019004 + MGP_CASTEiJ_P0040209 Rpl37 protein_coding protein_coding MGP_CASTEiJ_T0041794.1 MGP_CASTEiJ_G0021427.1 mouse_genomes_project 15 84511102 84524434 + MGP_CASTEiJ_P0041794 Mpped1 protein_coding protein_coding MGP_CASTEiJ_T0041795.1 MGP_CASTEiJ_G0021427.1 mouse_genomes_project 15 84521187 84596855 + MGP_CASTEiJ_P0041795 Mpped1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041796.1 MGP_CASTEiJ_G0021427.1 mouse_genomes_project 15 84524241 84594673 + MGP_CASTEiJ_P0041796 Mpped1 protein_coding protein_coding MGP_CASTEiJ_T0041797.1 MGP_CASTEiJ_G0021427.1 mouse_genomes_project 15 84524311 84578606 + MGP_CASTEiJ_P0041797 Mpped1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041798.1 MGP_CASTEiJ_G0021427.1 mouse_genomes_project 15 84524316 84594769 + MGP_CASTEiJ_P0041798 Mpped1 protein_coding protein_coding MGP_CASTEiJ_T0041799.1 MGP_CASTEiJ_G0021427.1 mouse_genomes_project 15 84524337 84596849 + MGP_CASTEiJ_P0041799 Mpped1 protein_coding protein_coding MGP_CASTEiJ_T0041800.1 MGP_CASTEiJ_G0021427.1 mouse_genomes_project 15 84528874 84590372 + MGP_CASTEiJ_P0041800 Mpped1 protein_coding protein_coding MGP_CASTEiJ_T0041801.1 MGP_CASTEiJ_G0021427.1 mouse_genomes_project 15 84532353 84594654 + MGP_CASTEiJ_P0041801 Mpped1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041802.1 MGP_CASTEiJ_G0021427.1 mouse_genomes_project 15 84571211 84594674 + MGP_CASTEiJ_P0041802 Mpped1 protein_coding protein_coding MGP_CASTEiJ_T0041803.1 MGP_CASTEiJ_G0021427.1 mouse_genomes_project 15 84571244 84592882 + MGP_CASTEiJ_P0041803 Mpped1 protein_coding protein_coding MGP_CASTEiJ_T0041518.1 MGP_CASTEiJ_G0021347.1 mouse_genomes_project 15 80218069 80228812 - MGP_CASTEiJ_P0041518 Cbx6 protein_coding protein_coding MGP_CASTEiJ_T0041519.1 MGP_CASTEiJ_G0021347.1 mouse_genomes_project 15 80220258 80228361 - MGP_CASTEiJ_P0041519 Cbx6 protein_coding protein_coding MGP_CASTEiJ_T0041520.1 MGP_CASTEiJ_G0021347.1 mouse_genomes_project 15 80221956 80228350 - MGP_CASTEiJ_P0041520 Cbx6 protein_coding protein_coding MGP_CASTEiJ_T0041521.1 MGP_CASTEiJ_G0021347.1 mouse_genomes_project 15 80222755 80227924 - Cbx6 protein_coding processed_transcript MGP_CASTEiJ_T0041522.1 MGP_CASTEiJ_G0021347.1 mouse_genomes_project 15 80222896 80228404 - MGP_CASTEiJ_P0041522 Cbx6 protein_coding protein_coding MGP_CASTEiJ_T0041523.1 MGP_CASTEiJ_G0021347.1 mouse_genomes_project 15 80226692 80228449 - Cbx6 protein_coding processed_transcript MGP_CASTEiJ_T0041524.1 MGP_CASTEiJ_G0021347.1 mouse_genomes_project 15 80227370 80228398 - Cbx6 protein_coding processed_transcript MGP_CASTEiJ_T0012703.1 MGP_CASTEiJ_G0010866.1 mouse_genomes_project 15 51881561 51882528 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0041650.1 MGP_CASTEiJ_G0021376.1 mouse_genomes_project 15 82241287 82270440 - MGP_CASTEiJ_P0041650 Rangap1 protein_coding protein_coding MGP_CASTEiJ_T0041651.1 MGP_CASTEiJ_G0021376.1 mouse_genomes_project 15 82241287 82270440 - MGP_CASTEiJ_P0041651 Rangap1 protein_coding protein_coding MGP_CASTEiJ_T0041652.1 MGP_CASTEiJ_G0021376.1 mouse_genomes_project 15 82241655 82270387 - MGP_CASTEiJ_P0041652 Rangap1 protein_coding protein_coding MGP_CASTEiJ_T0041889.1 MGP_CASTEiJ_G0021458.1 mouse_genomes_project 15 86975183 87062587 + MGP_CASTEiJ_P0041889 Gramd4 protein_coding protein_coding MGP_CASTEiJ_T0041890.1 MGP_CASTEiJ_G0021458.1 mouse_genomes_project 15 86976217 87062571 + MGP_CASTEiJ_P0041890 Gramd4 protein_coding protein_coding MGP_CASTEiJ_T0041891.1 MGP_CASTEiJ_G0021458.1 mouse_genomes_project 15 86976362 87062584 + MGP_CASTEiJ_P0041891 Gramd4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041892.1 MGP_CASTEiJ_G0021458.1 mouse_genomes_project 15 86985314 87047212 + Gramd4 protein_coding processed_transcript MGP_CASTEiJ_T0041893.1 MGP_CASTEiJ_G0021458.1 mouse_genomes_project 15 86992184 87009978 + Gramd4 protein_coding processed_transcript MGP_CASTEiJ_T0041788.1 MGP_CASTEiJ_G0021426.1 mouse_genomes_project 15 84320459 84448491 - MGP_CASTEiJ_P0041788 Scube1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041789.1 MGP_CASTEiJ_G0021426.1 mouse_genomes_project 15 84320465 84448572 - MGP_CASTEiJ_P0041789 Scube1 protein_coding protein_coding MGP_CASTEiJ_T0041790.1 MGP_CASTEiJ_G0021426.1 mouse_genomes_project 15 84322893 84448572 - Scube1 protein_coding retained_intron MGP_CASTEiJ_T0041791.1 MGP_CASTEiJ_G0021426.1 mouse_genomes_project 15 84322897 84448572 - MGP_CASTEiJ_P0041791 Scube1 protein_coding protein_coding MGP_CASTEiJ_T0041792.1 MGP_CASTEiJ_G0021426.1 mouse_genomes_project 15 84324399 84448572 - MGP_CASTEiJ_P0041792 Scube1 protein_coding protein_coding MGP_CASTEiJ_T0041793.1 MGP_CASTEiJ_G0021426.1 mouse_genomes_project 15 84324399 84448572 - MGP_CASTEiJ_P0041793 Scube1 protein_coding protein_coding MGP_CASTEiJ_T0006564.1 MGP_CASTEiJ_G0005438.1 mouse_genomes_project 15 7844029 7914675 + 4930556M19Rik lincRNA lincRNA MGP_CASTEiJ_T0040341.1 MGP_CASTEiJ_G0020982.1 mouse_genomes_project 15 7595901 7603456 + MGP_CASTEiJ_P0040341 Rad1 protein_coding protein_coding MGP_CASTEiJ_T0040342.1 MGP_CASTEiJ_G0020982.1 mouse_genomes_project 15 7595932 7603451 + Rad1 protein_coding retained_intron MGP_CASTEiJ_T0040343.1 MGP_CASTEiJ_G0020982.1 mouse_genomes_project 15 7595952 7611293 + MGP_CASTEiJ_P0040343 Rad1 protein_coding protein_coding MGP_CASTEiJ_T0040344.1 MGP_CASTEiJ_G0020982.1 mouse_genomes_project 15 7595963 7600229 + MGP_CASTEiJ_P0040344 Rad1 protein_coding protein_coding MGP_CASTEiJ_T0040345.1 MGP_CASTEiJ_G0020982.1 mouse_genomes_project 15 7596358 7603230 + MGP_CASTEiJ_P0040345 Rad1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040346.1 MGP_CASTEiJ_G0020982.1 mouse_genomes_project 15 7596492 7603441 + MGP_CASTEiJ_P0040346 Rad1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006573.1 MGP_CASTEiJ_G0005443.1 mouse_genomes_project 15 30555289 30555940 + 4930518I17Rik lincRNA lincRNA MGP_CASTEiJ_T0009814.1 MGP_CASTEiJ_G0008002.1 mouse_genomes_project 15 88046932 88047019 + Gm23416 miRNA miRNA MGP_CASTEiJ_T0042509.1 MGP_CASTEiJ_G0021656.1 mouse_genomes_project 15 104087197 104113702 + MGP_CASTEiJ_P0042509 Eif4b protein_coding protein_coding MGP_CASTEiJ_T0041820.1 MGP_CASTEiJ_G0021434.1 mouse_genomes_project 15 85113489 85116509 + Parvg protein_coding processed_transcript MGP_CASTEiJ_T0041821.1 MGP_CASTEiJ_G0021434.1 mouse_genomes_project 15 85114183 85132633 + MGP_CASTEiJ_P0041821 Parvg protein_coding protein_coding MGP_CASTEiJ_T0041822.1 MGP_CASTEiJ_G0021434.1 mouse_genomes_project 15 85114197 85118461 + MGP_CASTEiJ_P0041822 Parvg protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041823.1 MGP_CASTEiJ_G0021434.1 mouse_genomes_project 15 85114225 85118447 + MGP_CASTEiJ_P0041823 Parvg protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041824.1 MGP_CASTEiJ_G0021434.1 mouse_genomes_project 15 85114258 85119657 + Parvg protein_coding processed_transcript MGP_CASTEiJ_T0041825.1 MGP_CASTEiJ_G0021434.1 mouse_genomes_project 15 85115567 85118497 + MGP_CASTEiJ_P0041825 Parvg protein_coding protein_coding MGP_CASTEiJ_T0041826.1 MGP_CASTEiJ_G0021434.1 mouse_genomes_project 15 85115567 85132669 + MGP_CASTEiJ_P0041826 Parvg protein_coding protein_coding MGP_CASTEiJ_T0042028.1 MGP_CASTEiJ_G0021494.1 mouse_genomes_project 15 90551619 90564432 + MGP_CASTEiJ_P0042028 Mapk8ip2 protein_coding protein_coding MGP_CASTEiJ_T0042029.1 MGP_CASTEiJ_G0021494.1 mouse_genomes_project 15 90552735 90554349 + MGP_CASTEiJ_P0042029 Mapk8ip2 protein_coding protein_coding MGP_CASTEiJ_T0042175.1 MGP_CASTEiJ_G0021537.1 mouse_genomes_project 15 99361992 99404790 - MGP_CASTEiJ_P0042175 Hdac7 protein_coding protein_coding MGP_CASTEiJ_T0042176.1 MGP_CASTEiJ_G0021537.1 mouse_genomes_project 15 99361994 99417824 - MGP_CASTEiJ_P0042176 Hdac7 protein_coding protein_coding MGP_CASTEiJ_T0042177.1 MGP_CASTEiJ_G0021537.1 mouse_genomes_project 15 99362009 99405063 - MGP_CASTEiJ_P0042177 Hdac7 protein_coding protein_coding MGP_CASTEiJ_T0042178.1 MGP_CASTEiJ_G0021537.1 mouse_genomes_project 15 99362015 99363779 - Hdac7 protein_coding retained_intron MGP_CASTEiJ_T0042179.1 MGP_CASTEiJ_G0021537.1 mouse_genomes_project 15 99362016 99385014 - MGP_CASTEiJ_P0042179 Hdac7 protein_coding protein_coding MGP_CASTEiJ_T0042180.1 MGP_CASTEiJ_G0021537.1 mouse_genomes_project 15 99362016 99417591 - MGP_CASTEiJ_P0042180 Hdac7 protein_coding protein_coding MGP_CASTEiJ_T0042181.1 MGP_CASTEiJ_G0021537.1 mouse_genomes_project 15 99362018 99417624 - MGP_CASTEiJ_P0042181 Hdac7 protein_coding protein_coding MGP_CASTEiJ_T0042182.1 MGP_CASTEiJ_G0021537.1 mouse_genomes_project 15 99362039 99417486 - MGP_CASTEiJ_P0042182 Hdac7 protein_coding protein_coding MGP_CASTEiJ_T0042183.1 MGP_CASTEiJ_G0021537.1 mouse_genomes_project 15 99362039 99404790 - MGP_CASTEiJ_P0042183 Hdac7 protein_coding protein_coding MGP_CASTEiJ_T0042184.1 MGP_CASTEiJ_G0021537.1 mouse_genomes_project 15 99367127 99404765 - MGP_CASTEiJ_P0042184 Hdac7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042185.1 MGP_CASTEiJ_G0021537.1 mouse_genomes_project 15 99368921 99377730 - MGP_CASTEiJ_P0042185 Hdac7 protein_coding protein_coding MGP_CASTEiJ_T0042186.1 MGP_CASTEiJ_G0021537.1 mouse_genomes_project 15 99370571 99378081 - MGP_CASTEiJ_P0042186 Hdac7 protein_coding protein_coding MGP_CASTEiJ_T0041293.1 MGP_CASTEiJ_G0021278.1 mouse_genomes_project 15 77204601 77217875 + MGP_CASTEiJ_P0041293 Apol6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041294.1 MGP_CASTEiJ_G0021278.1 mouse_genomes_project 15 77204947 77213930 + MGP_CASTEiJ_P0041294 Apol6 protein_coding protein_coding MGP_CASTEiJ_T0041295.1 MGP_CASTEiJ_G0021278.1 mouse_genomes_project 15 77205078 77212278 + MGP_CASTEiJ_P0041295 Apol6 protein_coding protein_coding MGP_CASTEiJ_T0041296.1 MGP_CASTEiJ_G0021278.1 mouse_genomes_project 15 77205148 77218684 + MGP_CASTEiJ_P0041296 Apol6 protein_coding protein_coding MGP_CASTEiJ_T0041297.1 MGP_CASTEiJ_G0021278.1 mouse_genomes_project 15 77205150 77212899 + MGP_CASTEiJ_P0041297 Apol6 protein_coding protein_coding MGP_CASTEiJ_T0041298.1 MGP_CASTEiJ_G0021278.1 mouse_genomes_project 15 77205360 77206112 + Apol6 protein_coding processed_transcript MGP_CASTEiJ_T0041299.1 MGP_CASTEiJ_G0021278.1 mouse_genomes_project 15 77214332 77217621 + Apol6 protein_coding processed_transcript MGP_CASTEiJ_T0006620.1 MGP_CASTEiJ_G0005475.1 mouse_genomes_project 15 92803436 92811932 + 4933438A12Rik lincRNA lincRNA MGP_CASTEiJ_T0100669.1 MGP_CASTEiJ_G0037582.1 mouse_genomes_project 15 32416701 32416825 - Gm24500 snoRNA snoRNA MGP_CASTEiJ_T0042496.1 MGP_CASTEiJ_G0021644.1 mouse_genomes_project 15 103735544 103743734 - MGP_CASTEiJ_P0042496 Krt74 protein_coding protein_coding MGP_CASTEiJ_T0042128.1 MGP_CASTEiJ_G0021520.1 mouse_genomes_project 15 96630512 96852019 - MGP_CASTEiJ_P0042128 Nell2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042129.1 MGP_CASTEiJ_G0021520.1 mouse_genomes_project 15 96630514 96952637 - MGP_CASTEiJ_P0042129 Nell2 protein_coding protein_coding MGP_CASTEiJ_T0042130.1 MGP_CASTEiJ_G0021520.1 mouse_genomes_project 15 96630993 96952183 - MGP_CASTEiJ_P0042130 Nell2 protein_coding protein_coding MGP_CASTEiJ_T0009831.1 MGP_CASTEiJ_G0008019.1 mouse_genomes_project 15 105071241 105071326 + Mir196a-2 miRNA miRNA MGP_CASTEiJ_T0042155.1 MGP_CASTEiJ_G0021534.1 mouse_genomes_project 15 99281828 99302898 - MGP_CASTEiJ_P0042155 Endou protein_coding protein_coding MGP_CASTEiJ_T0042156.1 MGP_CASTEiJ_G0021534.1 mouse_genomes_project 15 99281828 99292591 - MGP_CASTEiJ_P0042156 Endou protein_coding protein_coding MGP_CASTEiJ_T0042280.1 MGP_CASTEiJ_G0021571.1 mouse_genomes_project 15 100545791 100549405 - MGP_CASTEiJ_P0042280 Rhebl1 protein_coding protein_coding MGP_CASTEiJ_T0042281.1 MGP_CASTEiJ_G0021571.1 mouse_genomes_project 15 100546059 100549095 - Rhebl1 protein_coding processed_transcript MGP_CASTEiJ_T0042282.1 MGP_CASTEiJ_G0021571.1 mouse_genomes_project 15 100547544 100548755 - Rhebl1 protein_coding retained_intron MGP_CASTEiJ_T0009789.1 MGP_CASTEiJ_G0007977.1 mouse_genomes_project 15 76376396 76376470 + Mir6953 miRNA miRNA MGP_CASTEiJ_T0041914.1 MGP_CASTEiJ_G0021468.1 mouse_genomes_project 15 89947229 90018544 - MGP_CASTEiJ_P0041914 Ttll8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041915.1 MGP_CASTEiJ_G0021468.1 mouse_genomes_project 15 89961591 89969405 - MGP_CASTEiJ_P0041915 Ttll8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041916.1 MGP_CASTEiJ_G0021468.1 mouse_genomes_project 15 89966007 90018536 - MGP_CASTEiJ_P0041916 Ttll8 protein_coding protein_coding MGP_CASTEiJ_T0041917.1 MGP_CASTEiJ_G0021468.1 mouse_genomes_project 15 89966063 90018185 - MGP_CASTEiJ_P0041917 Ttll8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041918.1 MGP_CASTEiJ_G0021468.1 mouse_genomes_project 15 89966141 90018808 - MGP_CASTEiJ_P0041918 Ttll8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041919.1 MGP_CASTEiJ_G0021468.1 mouse_genomes_project 15 89967778 89971979 - Ttll8 protein_coding retained_intron MGP_CASTEiJ_T0041920.1 MGP_CASTEiJ_G0021468.1 mouse_genomes_project 15 89977406 90018808 - MGP_CASTEiJ_P0041920 Ttll8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003505.1 MGP_CASTEiJ_G0003183.1 mouse_genomes_project 15 83766062 83769906 - Gm17206 antisense antisense MGP_CASTEiJ_T0041064.1 MGP_CASTEiJ_G0021222.1 mouse_genomes_project 15 76014413 76019199 + MGP_CASTEiJ_P0041064 Tigd5 protein_coding protein_coding MGP_CASTEiJ_T0006642.1 MGP_CASTEiJ_G0005491.1 mouse_genomes_project 15 105235303 105258496 - D930007P13Rik lincRNA lincRNA MGP_CASTEiJ_T0042432.1 MGP_CASTEiJ_G0021621.1 mouse_genomes_project 15 102574636 102615619 - MGP_CASTEiJ_P0042432 Galnt6 protein_coding protein_coding MGP_CASTEiJ_T0042433.1 MGP_CASTEiJ_G0021621.1 mouse_genomes_project 15 102574638 102615619 - MGP_CASTEiJ_P0042433 Galnt6 protein_coding protein_coding MGP_CASTEiJ_T0042434.1 MGP_CASTEiJ_G0021621.1 mouse_genomes_project 15 102575687 102606752 - MGP_CASTEiJ_P0042434 Galnt6 protein_coding protein_coding MGP_CASTEiJ_T0042517.1 MGP_CASTEiJ_G0021660.1 mouse_genomes_project 15 104173463 104190329 + MGP_CASTEiJ_P0042517 Soat2 protein_coding protein_coding MGP_CASTEiJ_T0042518.1 MGP_CASTEiJ_G0021660.1 mouse_genomes_project 15 104174053 104189988 + MGP_CASTEiJ_P0042518 Soat2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012736.1 MGP_CASTEiJ_G0010899.1 mouse_genomes_project 15 98852139 98852697 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0042461.1 MGP_CASTEiJ_G0021625.1 mouse_genomes_project 15 103030212 103034305 + MGP_CASTEiJ_P0042461 Ankrd33 protein_coding protein_coding MGP_CASTEiJ_T0041736.1 MGP_CASTEiJ_G0021407.1 mouse_genomes_project 15 83208055 83212965 - MGP_CASTEiJ_P0041736 Cyp2d34 protein_coding protein_coding MGP_CASTEiJ_T0041737.1 MGP_CASTEiJ_G0021407.1 mouse_genomes_project 15 83208112 83212915 - MGP_CASTEiJ_P0041737 Cyp2d34 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099454.1 MGP_CASTEiJ_G0036367.1 mouse_genomes_project 15 78014132 78014232 - Gm22107 snRNA snRNA MGP_CASTEiJ_T0041709.1 MGP_CASTEiJ_G0021391.1 mouse_genomes_project 15 82715512 82730119 + MGP_CASTEiJ_P0041709 Ccdc134 protein_coding protein_coding MGP_CASTEiJ_T0100693.1 MGP_CASTEiJ_G0037606.1 mouse_genomes_project 15 85112691 85112835 - Gm22890 snoRNA snoRNA MGP_CASTEiJ_T0012680.1 MGP_CASTEiJ_G0010843.1 mouse_genomes_project 15 2114864 2116100 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040550.1 MGP_CASTEiJ_G0021052.1 mouse_genomes_project 15 34882699 34906859 - MGP_CASTEiJ_P0040550 Ankrd46 protein_coding protein_coding MGP_CASTEiJ_T0041653.1 MGP_CASTEiJ_G0021377.1 mouse_genomes_project 15 82285295 82340427 + MGP_CASTEiJ_P0041653 Zc3h7b protein_coding protein_coding MGP_CASTEiJ_T0003518.1 MGP_CASTEiJ_G0003194.1 mouse_genomes_project 15 101526416 101547317 + Gm17058 antisense antisense MGP_CASTEiJ_T0042569.1 MGP_CASTEiJ_G0021673.1 mouse_genomes_project 15 104521917 104523473 + MGP_CASTEiJ_P0042569 Prr13 protein_coding protein_coding MGP_CASTEiJ_T0042570.1 MGP_CASTEiJ_G0021673.1 mouse_genomes_project 15 104522064 104525681 + MGP_CASTEiJ_P0042570 Prr13 protein_coding protein_coding MGP_CASTEiJ_T0042571.1 MGP_CASTEiJ_G0021673.1 mouse_genomes_project 15 104522091 104525657 + MGP_CASTEiJ_P0042571 Prr13 protein_coding protein_coding MGP_CASTEiJ_T0042572.1 MGP_CASTEiJ_G0021673.1 mouse_genomes_project 15 104522121 104525659 + MGP_CASTEiJ_P0042572 Prr13 protein_coding protein_coding MGP_CASTEiJ_T0042573.1 MGP_CASTEiJ_G0021673.1 mouse_genomes_project 15 104522967 104525651 + MGP_CASTEiJ_P0042573 Prr13 protein_coding protein_coding MGP_CASTEiJ_T0040206.1 MGP_CASTEiJ_G0020949.1 mouse_genomes_project 15 1863996 1948966 - MGP_CASTEiJ_P0040206 C7 protein_coding protein_coding MGP_CASTEiJ_T0041096.1 MGP_CASTEiJ_G0021234.1 mouse_genomes_project 15 76234010 76245223 - MGP_CASTEiJ_P0041096 BC024139 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041097.1 MGP_CASTEiJ_G0021234.1 mouse_genomes_project 15 76234013 76245169 - MGP_CASTEiJ_P0041097 BC024139 protein_coding protein_coding MGP_CASTEiJ_T0041098.1 MGP_CASTEiJ_G0021234.1 mouse_genomes_project 15 76234014 76245183 - MGP_CASTEiJ_P0041098 BC024139 protein_coding protein_coding MGP_CASTEiJ_T0041099.1 MGP_CASTEiJ_G0021234.1 mouse_genomes_project 15 76237277 76244698 - BC024139 protein_coding processed_transcript MGP_CASTEiJ_T0041587.1 MGP_CASTEiJ_G0021364.1 mouse_genomes_project 15 81453334 81481676 + MGP_CASTEiJ_P0041587 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041588.1 MGP_CASTEiJ_G0021364.1 mouse_genomes_project 15 81453354 81489794 + protein_coding processed_transcript MGP_CASTEiJ_T0041589.1 MGP_CASTEiJ_G0021364.1 mouse_genomes_project 15 81453355 81489778 + MGP_CASTEiJ_P0041589 protein_coding protein_coding MGP_CASTEiJ_T0041590.1 MGP_CASTEiJ_G0021364.1 mouse_genomes_project 15 81453375 81479351 + protein_coding processed_transcript MGP_CASTEiJ_T0041591.1 MGP_CASTEiJ_G0021364.1 mouse_genomes_project 15 81453375 81481658 + MGP_CASTEiJ_P0041591 protein_coding protein_coding MGP_CASTEiJ_T0041592.1 MGP_CASTEiJ_G0021364.1 mouse_genomes_project 15 81453392 81479351 + protein_coding processed_transcript MGP_CASTEiJ_T0041594.1 MGP_CASTEiJ_G0021364.1 mouse_genomes_project 15 81485444 81487457 + protein_coding retained_intron MGP_CASTEiJ_T0041595.1 MGP_CASTEiJ_G0021364.1 mouse_genomes_project 15 81485865 81488043 + MGP_CASTEiJ_P0041595 protein_coding protein_coding MGP_CASTEiJ_T0041596.1 MGP_CASTEiJ_G0021364.1 mouse_genomes_project 15 81486756 81487806 + protein_coding retained_intron MGP_CASTEiJ_T0041597.1 MGP_CASTEiJ_G0021364.1 mouse_genomes_project 15 81487364 81489394 + protein_coding retained_intron MGP_CASTEiJ_T0041598.1 MGP_CASTEiJ_G0021364.1 mouse_genomes_project 15 81488141 81489261 + protein_coding retained_intron MGP_CASTEiJ_T0041599.1 MGP_CASTEiJ_G0021364.1 mouse_genomes_project 15 81488231 81489246 + protein_coding retained_intron MGP_CASTEiJ_T0041600.1 MGP_CASTEiJ_G0021364.1 mouse_genomes_project 15 81488383 81489140 + protein_coding retained_intron MGP_CASTEiJ_T0040376.1 MGP_CASTEiJ_G0020994.1 mouse_genomes_project 15 9428974 9499205 + MGP_CASTEiJ_P0040376 Mtmr12 protein_coding protein_coding MGP_CASTEiJ_T0040377.1 MGP_CASTEiJ_G0020994.1 mouse_genomes_project 15 9429031 9498959 + MGP_CASTEiJ_P0040377 Mtmr12 protein_coding protein_coding MGP_CASTEiJ_T0040378.1 MGP_CASTEiJ_G0020994.1 mouse_genomes_project 15 9429050 9499084 + MGP_CASTEiJ_P0040378 Mtmr12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040379.1 MGP_CASTEiJ_G0020994.1 mouse_genomes_project 15 9429064 9499202 + MGP_CASTEiJ_P0040379 Mtmr12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040380.1 MGP_CASTEiJ_G0020994.1 mouse_genomes_project 15 9448036 9469617 + Mtmr12 protein_coding processed_transcript MGP_CASTEiJ_T0041685.1 MGP_CASTEiJ_G0021386.1 mouse_genomes_project 15 82561222 82599921 + MGP_CASTEiJ_P0041685 Xrcc6 protein_coding protein_coding MGP_CASTEiJ_T0041692.1 MGP_CASTEiJ_G0021386.1 mouse_genomes_project 15 82588827 82618920 + MGP_CASTEiJ_P0041692 Xrcc6 protein_coding protein_coding MGP_CASTEiJ_T0041693.1 MGP_CASTEiJ_G0021386.1 mouse_genomes_project 15 82589680 82618920 + MGP_CASTEiJ_P0041693 Xrcc6 protein_coding protein_coding MGP_CASTEiJ_T0041694.1 MGP_CASTEiJ_G0021386.1 mouse_genomes_project 15 82589772 82600381 + MGP_CASTEiJ_P0041694 Xrcc6 protein_coding protein_coding MGP_CASTEiJ_T0041695.1 MGP_CASTEiJ_G0021386.1 mouse_genomes_project 15 82589775 82603024 + MGP_CASTEiJ_P0041695 Xrcc6 protein_coding protein_coding MGP_CASTEiJ_T0041696.1 MGP_CASTEiJ_G0021386.1 mouse_genomes_project 15 82589826 82603073 + MGP_CASTEiJ_P0041696 Xrcc6 protein_coding protein_coding MGP_CASTEiJ_T0041697.1 MGP_CASTEiJ_G0021386.1 mouse_genomes_project 15 82599630 82600277 + Xrcc6 protein_coding retained_intron MGP_CASTEiJ_T0041698.1 MGP_CASTEiJ_G0021386.1 mouse_genomes_project 15 82600322 82605139 + Xrcc6 protein_coding retained_intron MGP_CASTEiJ_T0041699.1 MGP_CASTEiJ_G0021386.1 mouse_genomes_project 15 82602775 82606969 + Xrcc6 protein_coding retained_intron MGP_CASTEiJ_T0041700.1 MGP_CASTEiJ_G0021386.1 mouse_genomes_project 15 82605446 82618638 + Xrcc6 protein_coding processed_transcript MGP_CASTEiJ_T0041701.1 MGP_CASTEiJ_G0021386.1 mouse_genomes_project 15 82606435 82616330 + Xrcc6 protein_coding retained_intron MGP_CASTEiJ_T0040416.1 MGP_CASTEiJ_G0021003.1 mouse_genomes_project 15 18455709 18457241 - MGP_CASTEiJ_P0040416 Acot10 protein_coding protein_coding MGP_CASTEiJ_T0012694.1 MGP_CASTEiJ_G0010857.1 mouse_genomes_project 15 35924862 35925333 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0042243.1 MGP_CASTEiJ_G0021557.1 mouse_genomes_project 15 100178374 100213882 - MGP_CASTEiJ_P0042243 Ccnt1 protein_coding protein_coding MGP_CASTEiJ_T0042244.1 MGP_CASTEiJ_G0021557.1 mouse_genomes_project 15 100178384 100182717 - Ccnt1 protein_coding processed_transcript MGP_CASTEiJ_T0042245.1 MGP_CASTEiJ_G0021557.1 mouse_genomes_project 15 100182903 100210564 - MGP_CASTEiJ_P0042245 Ccnt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042246.1 MGP_CASTEiJ_G0021557.1 mouse_genomes_project 15 100182903 100210564 - MGP_CASTEiJ_P0042246 Ccnt1 protein_coding protein_coding MGP_CASTEiJ_T0042247.1 MGP_CASTEiJ_G0021557.1 mouse_genomes_project 15 100183831 100195186 - Ccnt1 protein_coding retained_intron MGP_CASTEiJ_T0042248.1 MGP_CASTEiJ_G0021557.1 mouse_genomes_project 15 100184032 100186714 - Ccnt1 protein_coding retained_intron MGP_CASTEiJ_T0042249.1 MGP_CASTEiJ_G0021557.1 mouse_genomes_project 15 100184259 100208067 - Ccnt1 protein_coding retained_intron MGP_CASTEiJ_T0042250.1 MGP_CASTEiJ_G0021557.1 mouse_genomes_project 15 100188466 100210473 - Ccnt1 protein_coding retained_intron MGP_CASTEiJ_T0042251.1 MGP_CASTEiJ_G0021557.1 mouse_genomes_project 15 100201522 100210608 - Ccnt1 protein_coding retained_intron MGP_CASTEiJ_T0041199.1 MGP_CASTEiJ_G0021250.1 mouse_genomes_project 15 76591662 76617406 - MGP_CASTEiJ_P0041199 Bop1 protein_coding protein_coding MGP_CASTEiJ_T0041200.1 MGP_CASTEiJ_G0021250.1 mouse_genomes_project 15 76591812 76594819 - MGP_CASTEiJ_P0041200 Bop1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041876.1 MGP_CASTEiJ_G0021455.1 mouse_genomes_project 15 86750181 86767066 + MGP_CASTEiJ_P0041876 Gtse1 protein_coding protein_coding MGP_CASTEiJ_T0040462.1 MGP_CASTEiJ_G0021019.1 mouse_genomes_project 15 28444665 29319601 + MGP_CASTEiJ_P0040462 Ctnnd2 protein_coding protein_coding MGP_CASTEiJ_T0003494.1 MGP_CASTEiJ_G0003176.1 mouse_genomes_project 15 74723377 74741069 + Gm17189 antisense antisense MGP_CASTEiJ_T0009810.1 MGP_CASTEiJ_G0007998.1 mouse_genomes_project 15 84933792 84933900 + Mir6392 miRNA miRNA MGP_CASTEiJ_T0040358.1 MGP_CASTEiJ_G0020990.1 mouse_genomes_project 15 8546204 8562200 - MGP_CASTEiJ_P0040358 Tars protein_coding protein_coding MGP_CASTEiJ_T0040359.1 MGP_CASTEiJ_G0020990.1 mouse_genomes_project 15 8546341 8562138 - MGP_CASTEiJ_P0040359 Tars protein_coding unknown_likely_coding MGP_CASTEiJ_T0040716.1 MGP_CASTEiJ_G0021113.1 mouse_genomes_project 15 54397805 54623477 + MGP_CASTEiJ_P0040716 Col14a1 protein_coding protein_coding MGP_CASTEiJ_T0040717.1 MGP_CASTEiJ_G0021113.1 mouse_genomes_project 15 54397805 54623478 + MGP_CASTEiJ_P0040717 Col14a1 protein_coding protein_coding MGP_CASTEiJ_T0040718.1 MGP_CASTEiJ_G0021113.1 mouse_genomes_project 15 54397806 54623476 + MGP_CASTEiJ_P0040718 Col14a1 protein_coding protein_coding MGP_CASTEiJ_T0040719.1 MGP_CASTEiJ_G0021113.1 mouse_genomes_project 15 54424107 54623486 + MGP_CASTEiJ_P0040719 Col14a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040720.1 MGP_CASTEiJ_G0021113.1 mouse_genomes_project 15 54546481 54622374 + MGP_CASTEiJ_P0040720 Col14a1 protein_coding protein_coding MGP_CASTEiJ_T0012709.1 MGP_CASTEiJ_G0010872.1 mouse_genomes_project 15 59345454 59346461 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040426.1 MGP_CASTEiJ_G0021007.1 mouse_genomes_project 15 23334095 23385460 - MGP_CASTEiJ_P0040426 Basp1 protein_coding protein_coding MGP_CASTEiJ_T0042253.1 MGP_CASTEiJ_G0021559.1 mouse_genomes_project 15 100234138 100248855 - MGP_CASTEiJ_P0042253 Adcy6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042254.1 MGP_CASTEiJ_G0021559.1 mouse_genomes_project 15 100234146 100251766 - MGP_CASTEiJ_P0042254 Adcy6 protein_coding protein_coding MGP_CASTEiJ_T0042422.1 MGP_CASTEiJ_G0021618.1 mouse_genomes_project 15 102503157 102518461 - MGP_CASTEiJ_P0042422 Smagp protein_coding protein_coding MGP_CASTEiJ_T0042423.1 MGP_CASTEiJ_G0021618.1 mouse_genomes_project 15 102503157 102518451 - MGP_CASTEiJ_P0042423 Smagp protein_coding protein_coding MGP_CASTEiJ_T0099433.1 MGP_CASTEiJ_G0036346.1 mouse_genomes_project 15 43572100 43572193 + Gm24768 snRNA snRNA MGP_CASTEiJ_T0100665.1 MGP_CASTEiJ_G0037578.1 mouse_genomes_project 15 28274643 28274723 - Gm23327 snoRNA snoRNA MGP_CASTEiJ_T0011072.1 MGP_CASTEiJ_G0009260.1 mouse_genomes_project 15 105045992 105046149 + Gm27535 misc_RNA misc_RNA MGP_CASTEiJ_T0041010.1 MGP_CASTEiJ_G0021204.1 mouse_genomes_project 15 74983714 75492969 - MGP_CASTEiJ_P0041010 protein_coding protein_coding MGP_CASTEiJ_T0041017.1 MGP_CASTEiJ_G0021204.1 mouse_genomes_project 15 75492472 75492770 - MGP_CASTEiJ_P0041017 protein_coding protein_coding MGP_CASTEiJ_T0012727.1 MGP_CASTEiJ_G0010890.1 mouse_genomes_project 15 85933074 85933492 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100667.1 MGP_CASTEiJ_G0037580.1 mouse_genomes_project 15 29475815 29475949 - Gm26416 snoRNA snoRNA MGP_CASTEiJ_T0041454.1 MGP_CASTEiJ_G0021329.1 mouse_genomes_project 15 79603248 79630614 - MGP_CASTEiJ_P0041454 Baiap2l2 protein_coding protein_coding MGP_CASTEiJ_T0041455.1 MGP_CASTEiJ_G0021329.1 mouse_genomes_project 15 79603249 79630519 - MGP_CASTEiJ_P0041455 Baiap2l2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041456.1 MGP_CASTEiJ_G0021329.1 mouse_genomes_project 15 79603384 79604402 - Baiap2l2 protein_coding processed_transcript MGP_CASTEiJ_T0041457.1 MGP_CASTEiJ_G0021329.1 mouse_genomes_project 15 79604766 79606341 - Baiap2l2 protein_coding processed_transcript MGP_CASTEiJ_T0041458.1 MGP_CASTEiJ_G0021329.1 mouse_genomes_project 15 79615424 79630570 - MGP_CASTEiJ_P0041458 Baiap2l2 protein_coding protein_coding MGP_CASTEiJ_T0042302.1 MGP_CASTEiJ_G0021583.1 mouse_genomes_project 15 100988580 101006393 - MGP_CASTEiJ_P0042302 Fam186b protein_coding protein_coding MGP_CASTEiJ_T0012715.1 MGP_CASTEiJ_G0010878.1 mouse_genomes_project 15 75950477 75951741 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099463.1 MGP_CASTEiJ_G0036376.1 mouse_genomes_project 15 91165861 91165968 - Gm24415 snRNA snRNA MGP_CASTEiJ_T0040396.1 MGP_CASTEiJ_G0020999.1 mouse_genomes_project 15 10097078 10211943 + MGP_CASTEiJ_P0040396 Drosha protein_coding protein_coding MGP_CASTEiJ_T0040397.1 MGP_CASTEiJ_G0020999.1 mouse_genomes_project 15 10097126 10211896 + MGP_CASTEiJ_P0040397 Drosha protein_coding protein_coding MGP_CASTEiJ_T0040398.1 MGP_CASTEiJ_G0020999.1 mouse_genomes_project 15 10097153 10104632 + Drosha protein_coding processed_transcript MGP_CASTEiJ_T0040399.1 MGP_CASTEiJ_G0020999.1 mouse_genomes_project 15 10097153 10104632 + Drosha protein_coding processed_transcript MGP_CASTEiJ_T0040400.1 MGP_CASTEiJ_G0020999.1 mouse_genomes_project 15 10098390 10104550 + Drosha protein_coding processed_transcript MGP_CASTEiJ_T0040401.1 MGP_CASTEiJ_G0020999.1 mouse_genomes_project 15 10103839 10211775 + MGP_CASTEiJ_P0040401 Drosha protein_coding protein_coding MGP_CASTEiJ_T0040402.1 MGP_CASTEiJ_G0020999.1 mouse_genomes_project 15 10107360 10178075 + Drosha protein_coding retained_intron MGP_CASTEiJ_T0040403.1 MGP_CASTEiJ_G0020999.1 mouse_genomes_project 15 10150308 10156922 + Drosha protein_coding processed_transcript MGP_CASTEiJ_T0009766.1 MGP_CASTEiJ_G0007954.1 mouse_genomes_project 15 19772813 19772982 - Gm44373 miRNA miRNA MGP_CASTEiJ_T0040859.1 MGP_CASTEiJ_G0021163.1 mouse_genomes_project 15 66064646 66103259 - MGP_CASTEiJ_P0040859 Tmem71 protein_coding protein_coding MGP_CASTEiJ_T0040633.1 MGP_CASTEiJ_G0021079.1 mouse_genomes_project 15 39983015 40423377 + MGP_CASTEiJ_P0040633 Oxr1 protein_coding protein_coding MGP_CASTEiJ_T0040634.1 MGP_CASTEiJ_G0021079.1 mouse_genomes_project 15 40348903 40389048 + MGP_CASTEiJ_P0040634 Oxr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040635.1 MGP_CASTEiJ_G0021079.1 mouse_genomes_project 15 40348961 40423382 + MGP_CASTEiJ_P0040635 Oxr1 protein_coding protein_coding MGP_CASTEiJ_T0040636.1 MGP_CASTEiJ_G0021079.1 mouse_genomes_project 15 40348961 40423377 + MGP_CASTEiJ_P0040636 Oxr1 protein_coding protein_coding MGP_CASTEiJ_T0040637.1 MGP_CASTEiJ_G0021079.1 mouse_genomes_project 15 40349442 40423377 + MGP_CASTEiJ_P0040637 Oxr1 protein_coding protein_coding MGP_CASTEiJ_T0040638.1 MGP_CASTEiJ_G0021079.1 mouse_genomes_project 15 40349450 40423380 + MGP_CASTEiJ_P0040638 Oxr1 protein_coding protein_coding MGP_CASTEiJ_T0040639.1 MGP_CASTEiJ_G0021079.1 mouse_genomes_project 15 40393230 40423377 + MGP_CASTEiJ_P0040639 Oxr1 protein_coding protein_coding MGP_CASTEiJ_T0042636.1 MGP_CASTEiJ_G0021692.1 mouse_genomes_project 15 105264932 105269651 - MGP_CASTEiJ_P0042636 Smug1 protein_coding protein_coding MGP_CASTEiJ_T0000908.1 MGP_CASTEiJ_G0000847.1 mouse_genomes_project 15 105164423 105165447 - TEC TEC MGP_CASTEiJ_T0040781.1 MGP_CASTEiJ_G0021137.1 mouse_genomes_project 15 58151376 58195099 - MGP_CASTEiJ_P0040781 Tatdn1 protein_coding protein_coding MGP_CASTEiJ_T0040782.1 MGP_CASTEiJ_G0021137.1 mouse_genomes_project 15 58163612 58190090 - MGP_CASTEiJ_P0040782 Tatdn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040328.1 MGP_CASTEiJ_G0020979.1 mouse_genomes_project 15 7465914 7478537 + MGP_CASTEiJ_P0040328 Agxt2 protein_coding protein_coding MGP_CASTEiJ_T0040329.1 MGP_CASTEiJ_G0020979.1 mouse_genomes_project 15 7465919 7516436 + MGP_CASTEiJ_P0040329 Agxt2 protein_coding protein_coding MGP_CASTEiJ_T0040330.1 MGP_CASTEiJ_G0020979.1 mouse_genomes_project 15 7465919 7488176 + MGP_CASTEiJ_P0040330 Agxt2 protein_coding protein_coding MGP_CASTEiJ_T0040331.1 MGP_CASTEiJ_G0020979.1 mouse_genomes_project 15 7465961 7516021 + MGP_CASTEiJ_P0040331 Agxt2 protein_coding protein_coding MGP_CASTEiJ_T0100670.1 MGP_CASTEiJ_G0037583.1 mouse_genomes_project 15 32573729 32573781 - Gm25809 snoRNA snoRNA MGP_CASTEiJ_T0040237.1 MGP_CASTEiJ_G0020957.1 mouse_genomes_project 15 3508938 3612681 + MGP_CASTEiJ_P0040237 Fyb protein_coding protein_coding MGP_CASTEiJ_T0040238.1 MGP_CASTEiJ_G0020957.1 mouse_genomes_project 15 3522108 3564819 + Fyb protein_coding retained_intron MGP_CASTEiJ_T0040239.1 MGP_CASTEiJ_G0020957.1 mouse_genomes_project 15 3522205 3610399 + MGP_CASTEiJ_P0040239 Fyb protein_coding unknown_likely_coding MGP_CASTEiJ_T0040240.1 MGP_CASTEiJ_G0020957.1 mouse_genomes_project 15 3526974 3581841 + MGP_CASTEiJ_P0040240 Fyb protein_coding protein_coding MGP_CASTEiJ_T0040241.1 MGP_CASTEiJ_G0020957.1 mouse_genomes_project 15 3563804 3579264 + Fyb protein_coding retained_intron MGP_CASTEiJ_T0040242.1 MGP_CASTEiJ_G0020957.1 mouse_genomes_project 15 3590365 3607969 + MGP_CASTEiJ_P0040242 Fyb protein_coding protein_coding MGP_CASTEiJ_T0040243.1 MGP_CASTEiJ_G0020957.1 mouse_genomes_project 15 3594271 3600003 + Fyb protein_coding retained_intron MGP_CASTEiJ_T0040244.1 MGP_CASTEiJ_G0020957.1 mouse_genomes_project 15 3607497 3610333 + Fyb protein_coding retained_intron MGP_CASTEiJ_T0003495.1 MGP_CASTEiJ_G0003177.1 mouse_genomes_project 15 75746844 75748967 + Gm15945 antisense antisense MGP_CASTEiJ_T0042292.1 MGP_CASTEiJ_G0021576.1 mouse_genomes_project 15 100748679 100752459 + MGP_CASTEiJ_P0042292 Prph protein_coding protein_coding MGP_CASTEiJ_T0042293.1 MGP_CASTEiJ_G0021576.1 mouse_genomes_project 15 100748679 100752459 + MGP_CASTEiJ_P0042293 Prph protein_coding protein_coding MGP_CASTEiJ_T0041717.1 MGP_CASTEiJ_G0021397.1 mouse_genomes_project 15 82872738 82893658 + MGP_CASTEiJ_P0041717 Sept3 protein_coding protein_coding MGP_CASTEiJ_T0041718.1 MGP_CASTEiJ_G0021397.1 mouse_genomes_project 15 82873050 82891274 + MGP_CASTEiJ_P0041718 Sept3 protein_coding protein_coding MGP_CASTEiJ_T0000899.1 MGP_CASTEiJ_G0000838.1 mouse_genomes_project 15 23200406 23200917 - TEC TEC MGP_CASTEiJ_T0041702.1 MGP_CASTEiJ_G0021388.1 mouse_genomes_project 15 82622066 82626598 - MGP_CASTEiJ_P0041702 protein_coding protein_coding MGP_CASTEiJ_T0006570.1 MGP_CASTEiJ_G0005441.1 mouse_genomes_project 15 15817192 15916655 - 4921515E04Rik lincRNA lincRNA MGP_CASTEiJ_T0040189.1 MGP_CASTEiJ_G0020944.1 mouse_genomes_project 15 913217 1051764 + MGP_CASTEiJ_P0040189 Oxct1 protein_coding protein_coding MGP_CASTEiJ_T0040190.1 MGP_CASTEiJ_G0020944.1 mouse_genomes_project 15 913518 1050385 + MGP_CASTEiJ_P0040190 Oxct1 protein_coding protein_coding MGP_CASTEiJ_T0040191.1 MGP_CASTEiJ_G0020944.1 mouse_genomes_project 15 913565 1056629 + MGP_CASTEiJ_P0040191 Oxct1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040192.1 MGP_CASTEiJ_G0020944.1 mouse_genomes_project 15 934799 984800 + Oxct1 protein_coding processed_transcript MGP_CASTEiJ_T0040193.1 MGP_CASTEiJ_G0020944.1 mouse_genomes_project 15 1036268 1050400 + Oxct1 protein_coding processed_transcript MGP_CASTEiJ_T0040194.1 MGP_CASTEiJ_G0020944.1 mouse_genomes_project 15 1036557 1050381 + Oxct1 protein_coding processed_transcript MGP_CASTEiJ_T0009830.1 MGP_CASTEiJ_G0008018.1 mouse_genomes_project 15 104736059 104736134 - Mir688 miRNA miRNA MGP_CASTEiJ_T0042625.1 MGP_CASTEiJ_G0021687.1 mouse_genomes_project 15 105065339 105117274 + Hoxc5 protein_coding processed_transcript MGP_CASTEiJ_T0042633.1 MGP_CASTEiJ_G0021687.1 mouse_genomes_project 15 105115412 105119033 + MGP_CASTEiJ_P0042633 Hoxc5 protein_coding protein_coding MGP_CASTEiJ_T0041907.1 MGP_CASTEiJ_G0021464.1 mouse_genomes_project 15 89792135 89815618 + protein_coding processed_transcript MGP_CASTEiJ_T0011052.1 MGP_CASTEiJ_G0009240.1 mouse_genomes_project 15 9172074 9172334 + Gm24074 misc_RNA misc_RNA MGP_CASTEiJ_T0040768.1 MGP_CASTEiJ_G0021127.1 mouse_genomes_project 15 57344983 57367578 + MGP_CASTEiJ_P0040768 Wdyhv1 protein_coding protein_coding MGP_CASTEiJ_T0040641.1 MGP_CASTEiJ_G0021081.1 mouse_genomes_project 15 41033696 41296549 - MGP_CASTEiJ_P0040641 Angpt1 protein_coding protein_coding MGP_CASTEiJ_T0042116.1 MGP_CASTEiJ_G0021516.1 mouse_genomes_project 15 95874002 95895619 - MGP_CASTEiJ_P0042116 Pus7l protein_coding protein_coding MGP_CASTEiJ_T0042117.1 MGP_CASTEiJ_G0021516.1 mouse_genomes_project 15 95888198 95895565 - Pus7l protein_coding retained_intron MGP_CASTEiJ_T0042118.1 MGP_CASTEiJ_G0021516.1 mouse_genomes_project 15 95892798 95895558 - MGP_CASTEiJ_P0042118 Pus7l protein_coding protein_coding MGP_CASTEiJ_T0041132.1 MGP_CASTEiJ_G0021240.1 mouse_genomes_project 15 76424741 76435116 - MGP_CASTEiJ_P0041132 Oplah protein_coding protein_coding MGP_CASTEiJ_T0041133.1 MGP_CASTEiJ_G0021240.1 mouse_genomes_project 15 76424741 76455729 - MGP_CASTEiJ_P0041133 Oplah protein_coding unknown_likely_coding MGP_CASTEiJ_T0041134.1 MGP_CASTEiJ_G0021240.1 mouse_genomes_project 15 76424747 76425636 - Oplah protein_coding retained_intron MGP_CASTEiJ_T0041135.1 MGP_CASTEiJ_G0021240.1 mouse_genomes_project 15 76424747 76435260 - MGP_CASTEiJ_P0041135 Oplah protein_coding protein_coding MGP_CASTEiJ_T0041136.1 MGP_CASTEiJ_G0021240.1 mouse_genomes_project 15 76425486 76426184 - Oplah protein_coding retained_intron MGP_CASTEiJ_T0041137.1 MGP_CASTEiJ_G0021240.1 mouse_genomes_project 15 76428614 76429143 - Oplah protein_coding retained_intron MGP_CASTEiJ_T0041138.1 MGP_CASTEiJ_G0021240.1 mouse_genomes_project 15 76428903 76430391 - Oplah protein_coding retained_intron MGP_CASTEiJ_T0041139.1 MGP_CASTEiJ_G0021240.1 mouse_genomes_project 15 76428981 76435404 - MGP_CASTEiJ_P0041139 Oplah protein_coding protein_coding MGP_CASTEiJ_T0041140.1 MGP_CASTEiJ_G0021240.1 mouse_genomes_project 15 76430092 76431226 - Oplah protein_coding processed_transcript MGP_CASTEiJ_T0041141.1 MGP_CASTEiJ_G0021240.1 mouse_genomes_project 15 76434501 76456218 - MGP_CASTEiJ_P0041141 Oplah protein_coding protein_coding MGP_CASTEiJ_T0041593.1 MGP_CASTEiJ_G0021365.1 mouse_genomes_project 15 81477785 81489241 + MGP_CASTEiJ_P0041593 protein_coding protein_coding MGP_CASTEiJ_T0042546.1 MGP_CASTEiJ_G0021668.1 mouse_genomes_project 15 104379350 104386666 + MGP_CASTEiJ_P0042546 Myg1 protein_coding protein_coding MGP_CASTEiJ_T0042547.1 MGP_CASTEiJ_G0021668.1 mouse_genomes_project 15 104379361 104380238 + Myg1 protein_coding retained_intron MGP_CASTEiJ_T0042548.1 MGP_CASTEiJ_G0021668.1 mouse_genomes_project 15 104379379 104386323 + Myg1 protein_coding retained_intron MGP_CASTEiJ_T0042549.1 MGP_CASTEiJ_G0021668.1 mouse_genomes_project 15 104379391 104386306 + MGP_CASTEiJ_P0042549 Myg1 protein_coding protein_coding MGP_CASTEiJ_T0042550.1 MGP_CASTEiJ_G0021668.1 mouse_genomes_project 15 104379396 104386218 + MGP_CASTEiJ_P0042550 Myg1 protein_coding protein_coding MGP_CASTEiJ_T0042551.1 MGP_CASTEiJ_G0021668.1 mouse_genomes_project 15 104379558 104385667 + Myg1 protein_coding retained_intron MGP_CASTEiJ_T0042552.1 MGP_CASTEiJ_G0021668.1 mouse_genomes_project 15 104380071 104385349 + Myg1 protein_coding processed_transcript MGP_CASTEiJ_T0042553.1 MGP_CASTEiJ_G0021668.1 mouse_genomes_project 15 104381281 104385373 + Myg1 protein_coding retained_intron MGP_CASTEiJ_T0042554.1 MGP_CASTEiJ_G0021668.1 mouse_genomes_project 15 104385242 104386323 + Myg1 protein_coding retained_intron MGP_CASTEiJ_T0042555.1 MGP_CASTEiJ_G0021668.1 mouse_genomes_project 15 104385504 104386262 + Myg1 protein_coding retained_intron MGP_CASTEiJ_T0042519.1 MGP_CASTEiJ_G0021661.1 mouse_genomes_project 15 104204074 104217817 - MGP_CASTEiJ_P0042519 Csad protein_coding protein_coding MGP_CASTEiJ_T0040417.1 MGP_CASTEiJ_G0021004.1 mouse_genomes_project 15 18925309 19423168 + MGP_CASTEiJ_P0040417 Cdh12 protein_coding protein_coding MGP_CASTEiJ_T0042601.1 MGP_CASTEiJ_G0021679.1 mouse_genomes_project 15 104591453 104703301 - MGP_CASTEiJ_P0042601 Atf7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040468.1 MGP_CASTEiJ_G0021022.1 mouse_genomes_project 15 29569646 29647659 - MGP_CASTEiJ_P0040468 Ankrd33b protein_coding protein_coding MGP_CASTEiJ_T0040469.1 MGP_CASTEiJ_G0021022.1 mouse_genomes_project 15 29569647 29647626 - MGP_CASTEiJ_P0040469 Ankrd33b protein_coding protein_coding MGP_CASTEiJ_T0040470.1 MGP_CASTEiJ_G0021022.1 mouse_genomes_project 15 29571056 29647432 - MGP_CASTEiJ_P0040470 Ankrd33b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040471.1 MGP_CASTEiJ_G0021022.1 mouse_genomes_project 15 29571964 29647626 - MGP_CASTEiJ_P0040471 Ankrd33b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040472.1 MGP_CASTEiJ_G0021022.1 mouse_genomes_project 15 29601995 29647468 - MGP_CASTEiJ_P0040472 Ankrd33b protein_coding protein_coding MGP_CASTEiJ_T0040478.1 MGP_CASTEiJ_G0021026.1 mouse_genomes_project 15 29892348 29903508 - MGP_CASTEiJ_P0040478 Cct5 protein_coding protein_coding MGP_CASTEiJ_T0040479.1 MGP_CASTEiJ_G0021026.1 mouse_genomes_project 15 29893528 29894608 - Cct5 protein_coding retained_intron MGP_CASTEiJ_T0040480.1 MGP_CASTEiJ_G0021026.1 mouse_genomes_project 15 29895028 29896103 - Cct5 protein_coding retained_intron MGP_CASTEiJ_T0040481.1 MGP_CASTEiJ_G0021026.1 mouse_genomes_project 15 29895919 29903200 - MGP_CASTEiJ_P0040481 Cct5 protein_coding protein_coding MGP_CASTEiJ_T0040482.1 MGP_CASTEiJ_G0021026.1 mouse_genomes_project 15 29897065 29903401 - Cct5 protein_coding retained_intron MGP_CASTEiJ_T0040508.1 MGP_CASTEiJ_G0021037.1 mouse_genomes_project 15 32736115 32741081 - MGP_CASTEiJ_P0040508 Rpl30 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040509.1 MGP_CASTEiJ_G0021037.1 mouse_genomes_project 15 32738289 32742565 - Rpl30 protein_coding processed_transcript MGP_CASTEiJ_T0040510.1 MGP_CASTEiJ_G0021037.1 mouse_genomes_project 15 32738289 32742817 - Rpl30 protein_coding retained_intron MGP_CASTEiJ_T0040511.1 MGP_CASTEiJ_G0021037.1 mouse_genomes_project 15 32738289 32743297 - MGP_CASTEiJ_P0040511 Rpl30 protein_coding protein_coding MGP_CASTEiJ_T0040512.1 MGP_CASTEiJ_G0021037.1 mouse_genomes_project 15 32738294 32742879 - MGP_CASTEiJ_P0040512 Rpl30 protein_coding protein_coding MGP_CASTEiJ_T0040513.1 MGP_CASTEiJ_G0021037.1 mouse_genomes_project 15 32738359 32739450 - Rpl30 protein_coding retained_intron MGP_CASTEiJ_T0040514.1 MGP_CASTEiJ_G0021037.1 mouse_genomes_project 15 32740305 32742916 - Rpl30 protein_coding processed_transcript MGP_CASTEiJ_T0000903.1 MGP_CASTEiJ_G0000842.1 mouse_genomes_project 15 67946962 67949882 - TEC TEC MGP_CASTEiJ_T0041487.1 MGP_CASTEiJ_G0021335.1 mouse_genomes_project 15 79893923 79905124 + MGP_CASTEiJ_P0041487 Kdelr3 protein_coding protein_coding MGP_CASTEiJ_T0009822.1 MGP_CASTEiJ_G0008010.1 mouse_genomes_project 15 100779774 100779835 + Mir6960 miRNA miRNA MGP_CASTEiJ_T0003527.1 MGP_CASTEiJ_G0003201.1 mouse_genomes_project 15 105211218 105214325 + Gm10830 antisense antisense MGP_CASTEiJ_T0041985.1 MGP_CASTEiJ_G0021483.1 mouse_genomes_project 15 90408013 90410631 + MGP_CASTEiJ_P0041985 Miox protein_coding protein_coding MGP_CASTEiJ_T0041986.1 MGP_CASTEiJ_G0021483.1 mouse_genomes_project 15 90408076 90409740 + Miox protein_coding retained_intron MGP_CASTEiJ_T0041987.1 MGP_CASTEiJ_G0021483.1 mouse_genomes_project 15 90408255 90410251 + Miox protein_coding retained_intron MGP_CASTEiJ_T0041988.1 MGP_CASTEiJ_G0021483.1 mouse_genomes_project 15 90408545 90410028 + MGP_CASTEiJ_P0041988 Miox protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041989.1 MGP_CASTEiJ_G0021483.1 mouse_genomes_project 15 90408546 90410030 + Miox protein_coding retained_intron MGP_CASTEiJ_T0041990.1 MGP_CASTEiJ_G0021483.1 mouse_genomes_project 15 90410048 90410627 + MGP_CASTEiJ_P0041990 Miox protein_coding protein_coding MGP_CASTEiJ_T0041155.1 MGP_CASTEiJ_G0021244.1 mouse_genomes_project 15 76477046 76481116 - Sharpin protein_coding retained_intron MGP_CASTEiJ_T0041156.1 MGP_CASTEiJ_G0021244.1 mouse_genomes_project 15 76477046 76481117 - MGP_CASTEiJ_P0041156 Sharpin protein_coding protein_coding MGP_CASTEiJ_T0041157.1 MGP_CASTEiJ_G0021244.1 mouse_genomes_project 15 76477047 76481081 - Sharpin protein_coding retained_intron MGP_CASTEiJ_T0041158.1 MGP_CASTEiJ_G0021244.1 mouse_genomes_project 15 76477047 76481053 - Sharpin protein_coding retained_intron MGP_CASTEiJ_T0041159.1 MGP_CASTEiJ_G0021244.1 mouse_genomes_project 15 76477060 76477690 - MGP_CASTEiJ_P0041159 Sharpin protein_coding protein_coding MGP_CASTEiJ_T0041160.1 MGP_CASTEiJ_G0021244.1 mouse_genomes_project 15 76477124 76478201 - Sharpin protein_coding retained_intron MGP_CASTEiJ_T0041161.1 MGP_CASTEiJ_G0021244.1 mouse_genomes_project 15 76477634 76480756 - MGP_CASTEiJ_P0041161 Sharpin protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041162.1 MGP_CASTEiJ_G0021244.1 mouse_genomes_project 15 76477854 76480697 - Sharpin protein_coding retained_intron MGP_CASTEiJ_T0041163.1 MGP_CASTEiJ_G0021244.1 mouse_genomes_project 15 76477902 76480688 - Sharpin protein_coding retained_intron MGP_CASTEiJ_T0041164.1 MGP_CASTEiJ_G0021244.1 mouse_genomes_project 15 76478617 76480718 - Sharpin protein_coding retained_intron MGP_CASTEiJ_T0040686.1 MGP_CASTEiJ_G0021100.1 mouse_genomes_project 15 51692654 51712391 + MGP_CASTEiJ_P0040686 Med30 protein_coding protein_coding MGP_CASTEiJ_T0041120.1 MGP_CASTEiJ_G0021236.1 mouse_genomes_project 15 76356854 76359404 - MGP_CASTEiJ_P0041120 Parp10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041121.1 MGP_CASTEiJ_G0021236.1 mouse_genomes_project 15 76358683 76371654 - Parp10 protein_coding retained_intron MGP_CASTEiJ_T0041122.1 MGP_CASTEiJ_G0021236.1 mouse_genomes_project 15 76358683 76371640 - MGP_CASTEiJ_P0041122 Parp10 protein_coding protein_coding MGP_CASTEiJ_T0041123.1 MGP_CASTEiJ_G0021236.1 mouse_genomes_project 15 76358683 76371661 - MGP_CASTEiJ_P0041123 Parp10 protein_coding protein_coding MGP_CASTEiJ_T0041124.1 MGP_CASTEiJ_G0021236.1 mouse_genomes_project 15 76359070 76359935 - Parp10 protein_coding processed_transcript MGP_CASTEiJ_T0041125.1 MGP_CASTEiJ_G0021236.1 mouse_genomes_project 15 76359419 76360153 - Parp10 protein_coding retained_intron MGP_CASTEiJ_T0000905.1 MGP_CASTEiJ_G0000844.1 mouse_genomes_project 15 86530291 86533647 + TEC TEC MGP_CASTEiJ_T0041921.1 MGP_CASTEiJ_G0021469.1 mouse_genomes_project 15 90020009 90041427 - MGP_CASTEiJ_P0041921 Mlc1 protein_coding protein_coding MGP_CASTEiJ_T0041922.1 MGP_CASTEiJ_G0021469.1 mouse_genomes_project 15 90020009 90041427 - MGP_CASTEiJ_P0041922 Mlc1 protein_coding protein_coding MGP_CASTEiJ_T0100685.1 MGP_CASTEiJ_G0037598.1 mouse_genomes_project 15 60688070 60688204 - Gm24696 snoRNA snoRNA MGP_CASTEiJ_T0042653.1 MGP_CASTEiJ_G0021697.1 mouse_genomes_project 15 105436173 105438378 - MGP_CASTEiJ_P0042653 Gpr84 protein_coding protein_coding MGP_CASTEiJ_T0006621.1 MGP_CASTEiJ_G0005476.1 mouse_genomes_project 15 93590516 93628608 + Gm26760 lincRNA lincRNA MGP_CASTEiJ_T0011062.1 MGP_CASTEiJ_G0009250.1 mouse_genomes_project 15 76395314 76395599 - Mirt2 misc_RNA misc_RNA MGP_CASTEiJ_T0041495.1 MGP_CASTEiJ_G0021339.1 mouse_genomes_project 15 80044568 80052966 + MGP_CASTEiJ_P0041495 Cby1 protein_coding protein_coding MGP_CASTEiJ_T0100655.1 MGP_CASTEiJ_G0037568.1 mouse_genomes_project 15 2018270 2018351 + Snord72 snoRNA snoRNA MGP_CASTEiJ_T0040609.1 MGP_CASTEiJ_G0021069.1 mouse_genomes_project 15 37417510 37448664 + MGP_CASTEiJ_P0040609 Fzd6 protein_coding protein_coding MGP_CASTEiJ_T0040610.1 MGP_CASTEiJ_G0021069.1 mouse_genomes_project 15 37417563 37448664 + MGP_CASTEiJ_P0040610 Fzd6 protein_coding protein_coding MGP_CASTEiJ_T0000897.1 MGP_CASTEiJ_G0000836.1 mouse_genomes_project 15 18033414 18034575 - TEC TEC MGP_CASTEiJ_T0041046.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 75999460 76014031 - MGP_CASTEiJ_P0041046 Eef1d protein_coding protein_coding MGP_CASTEiJ_T0041047.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 75999464 76014016 - MGP_CASTEiJ_P0041047 Eef1d protein_coding protein_coding MGP_CASTEiJ_T0041048.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 75999464 76014010 - MGP_CASTEiJ_P0041048 Eef1d protein_coding protein_coding MGP_CASTEiJ_T0041049.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 76000147 76013973 - MGP_CASTEiJ_P0041049 Eef1d protein_coding protein_coding MGP_CASTEiJ_T0041050.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 76000147 76008196 - MGP_CASTEiJ_P0041050 Eef1d protein_coding protein_coding MGP_CASTEiJ_T0041051.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 76000147 76013982 - MGP_CASTEiJ_P0041051 Eef1d protein_coding protein_coding MGP_CASTEiJ_T0041052.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 76000149 76014011 - MGP_CASTEiJ_P0041052 Eef1d protein_coding protein_coding MGP_CASTEiJ_T0041053.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 76000149 76013995 - MGP_CASTEiJ_P0041053 Eef1d protein_coding protein_coding MGP_CASTEiJ_T0041054.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 76000151 76001400 - Eef1d protein_coding retained_intron MGP_CASTEiJ_T0041055.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 76000463 76014005 - MGP_CASTEiJ_P0041055 Eef1d protein_coding protein_coding MGP_CASTEiJ_T0041056.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 76000933 76014235 - MGP_CASTEiJ_P0041056 Eef1d protein_coding protein_coding MGP_CASTEiJ_T0041057.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 76000940 76013995 - MGP_CASTEiJ_P0041057 Eef1d protein_coding protein_coding MGP_CASTEiJ_T0041058.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 76001053 76014226 - MGP_CASTEiJ_P0041058 Eef1d protein_coding protein_coding MGP_CASTEiJ_T0041059.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 76001335 76005897 - Eef1d protein_coding retained_intron MGP_CASTEiJ_T0041060.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 76002745 76013995 - Eef1d protein_coding retained_intron MGP_CASTEiJ_T0041061.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 76007762 76014226 - MGP_CASTEiJ_P0041061 Eef1d protein_coding protein_coding MGP_CASTEiJ_T0041062.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 76007901 76010003 - MGP_CASTEiJ_P0041062 Eef1d protein_coding protein_coding MGP_CASTEiJ_T0041063.1 MGP_CASTEiJ_G0021221.1 mouse_genomes_project 15 76008145 76013967 - MGP_CASTEiJ_P0041063 Eef1d protein_coding protein_coding MGP_CASTEiJ_T0100679.1 MGP_CASTEiJ_G0037592.1 mouse_genomes_project 15 46550375 46550512 + Gm23530 snoRNA snoRNA MGP_CASTEiJ_T0006625.1 MGP_CASTEiJ_G0005478.1 mouse_genomes_project 15 97598028 97764143 - 2610037D02Rik lincRNA lincRNA MGP_CASTEiJ_T0006629.1 MGP_CASTEiJ_G0005478.1 mouse_genomes_project 15 97760890 97765032 - 2610037D02Rik lincRNA lincRNA MGP_CASTEiJ_T0041730.1 MGP_CASTEiJ_G0021402.1 mouse_genomes_project 15 82954750 82960108 - MGP_CASTEiJ_P0041730 Ndufa6 protein_coding protein_coding MGP_CASTEiJ_T0041713.1 MGP_CASTEiJ_G0021395.1 mouse_genomes_project 15 82830733 82841692 - MGP_CASTEiJ_P0041713 Cenpm protein_coding protein_coding MGP_CASTEiJ_T0041714.1 MGP_CASTEiJ_G0021395.1 mouse_genomes_project 15 82830733 82841692 - MGP_CASTEiJ_P0041714 Cenpm protein_coding protein_coding MGP_CASTEiJ_T0006631.1 MGP_CASTEiJ_G0005481.1 mouse_genomes_project 15 100670082 100673869 + 4930578M01Rik lincRNA lincRNA MGP_CASTEiJ_T0040357.1 MGP_CASTEiJ_G0020989.1 mouse_genomes_project 15 8201621 8506642 + MGP_CASTEiJ_P0040357 Adamts12 protein_coding protein_coding MGP_CASTEiJ_T0040409.1 MGP_CASTEiJ_G0021002.1 mouse_genomes_project 15 16592685 16798577 + MGP_CASTEiJ_P0040409 Cdh10 protein_coding protein_coding MGP_CASTEiJ_T0040410.1 MGP_CASTEiJ_G0021002.1 mouse_genomes_project 15 16592696 16678081 + Cdh10 protein_coding retained_intron MGP_CASTEiJ_T0040411.1 MGP_CASTEiJ_G0021002.1 mouse_genomes_project 15 16592715 16750696 + Cdh10 protein_coding retained_intron MGP_CASTEiJ_T0040412.1 MGP_CASTEiJ_G0021002.1 mouse_genomes_project 15 16594071 16798577 + MGP_CASTEiJ_P0040412 Cdh10 protein_coding protein_coding MGP_CASTEiJ_T0040413.1 MGP_CASTEiJ_G0021002.1 mouse_genomes_project 15 16669318 16798077 + MGP_CASTEiJ_P0040413 Cdh10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040414.1 MGP_CASTEiJ_G0021002.1 mouse_genomes_project 15 16674560 16798023 + MGP_CASTEiJ_P0040414 Cdh10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040415.1 MGP_CASTEiJ_G0021002.1 mouse_genomes_project 15 16788871 16798577 + Cdh10 protein_coding retained_intron MGP_CASTEiJ_T0041179.1 MGP_CASTEiJ_G0021246.1 mouse_genomes_project 15 76486650 76496522 + MGP_CASTEiJ_P0041179 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0041932.1 MGP_CASTEiJ_G0021472.1 mouse_genomes_project 15 90129652 90139841 + MGP_CASTEiJ_P0041932 Trabd protein_coding protein_coding MGP_CASTEiJ_T0041933.1 MGP_CASTEiJ_G0021472.1 mouse_genomes_project 15 90130541 90141609 + MGP_CASTEiJ_P0041933 Trabd protein_coding protein_coding MGP_CASTEiJ_T0041934.1 MGP_CASTEiJ_G0021472.1 mouse_genomes_project 15 90130600 90141603 + MGP_CASTEiJ_P0041934 Trabd protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041935.1 MGP_CASTEiJ_G0021472.1 mouse_genomes_project 15 90130622 90140662 + MGP_CASTEiJ_P0041935 Trabd protein_coding protein_coding MGP_CASTEiJ_T0041936.1 MGP_CASTEiJ_G0021472.1 mouse_genomes_project 15 90130652 90140665 + MGP_CASTEiJ_P0041936 Trabd protein_coding protein_coding MGP_CASTEiJ_T0041937.1 MGP_CASTEiJ_G0021472.1 mouse_genomes_project 15 90137060 90141603 + Trabd protein_coding retained_intron MGP_CASTEiJ_T0041938.1 MGP_CASTEiJ_G0021472.1 mouse_genomes_project 15 90139240 90140156 + Trabd protein_coding retained_intron MGP_CASTEiJ_T0042073.1 MGP_CASTEiJ_G0021506.1 mouse_genomes_project 15 92888107 93034006 + MGP_CASTEiJ_P0042073 Lrrk2 protein_coding protein_coding MGP_CASTEiJ_T0042074.1 MGP_CASTEiJ_G0021506.1 mouse_genomes_project 15 92888213 93034012 + MGP_CASTEiJ_P0042074 Lrrk2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042075.1 MGP_CASTEiJ_G0021506.1 mouse_genomes_project 15 92956380 93006560 + Lrrk2 protein_coding processed_transcript MGP_CASTEiJ_T0042076.1 MGP_CASTEiJ_G0021506.1 mouse_genomes_project 15 92989825 92996012 + Lrrk2 protein_coding processed_transcript MGP_CASTEiJ_T0042077.1 MGP_CASTEiJ_G0021506.1 mouse_genomes_project 15 92997915 93033912 + Lrrk2 protein_coding processed_transcript MGP_CASTEiJ_T0042078.1 MGP_CASTEiJ_G0021506.1 mouse_genomes_project 15 93026088 93033912 + Lrrk2 protein_coding retained_intron MGP_CASTEiJ_T0009785.1 MGP_CASTEiJ_G0007973.1 mouse_genomes_project 15 73072210 73072278 - Mir151 miRNA miRNA MGP_CASTEiJ_T0040752.1 MGP_CASTEiJ_G0021123.1 mouse_genomes_project 15 57208576 57221166 - MGP_CASTEiJ_P0040752 protein_coding protein_coding MGP_CASTEiJ_T0040753.1 MGP_CASTEiJ_G0021123.1 mouse_genomes_project 15 57208587 57214210 - protein_coding processed_transcript MGP_CASTEiJ_T0040755.1 MGP_CASTEiJ_G0021123.1 mouse_genomes_project 15 57215440 57221041 - MGP_CASTEiJ_P0040755 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040756.1 MGP_CASTEiJ_G0021123.1 mouse_genomes_project 15 57217580 57221176 - MGP_CASTEiJ_P0040756 protein_coding protein_coding MGP_CASTEiJ_T0041397.1 MGP_CASTEiJ_G0021317.1 mouse_genomes_project 15 79257161 79265887 + MGP_CASTEiJ_P0041397 Nol12 protein_coding protein_coding MGP_CASTEiJ_T0041398.1 MGP_CASTEiJ_G0021317.1 mouse_genomes_project 15 79257179 79263183 + MGP_CASTEiJ_P0041398 Nol12 protein_coding protein_coding MGP_CASTEiJ_T0041399.1 MGP_CASTEiJ_G0021317.1 mouse_genomes_project 15 79257223 79263115 + MGP_CASTEiJ_P0041399 Nol12 protein_coding protein_coding MGP_CASTEiJ_T0041400.1 MGP_CASTEiJ_G0021317.1 mouse_genomes_project 15 79257411 79260058 + MGP_CASTEiJ_P0041400 Nol12 protein_coding protein_coding MGP_CASTEiJ_T0041401.1 MGP_CASTEiJ_G0021317.1 mouse_genomes_project 15 79257433 79258809 + MGP_CASTEiJ_P0041401 Nol12 protein_coding protein_coding MGP_CASTEiJ_T0100684.1 MGP_CASTEiJ_G0037597.1 mouse_genomes_project 15 60028294 60028426 - Gm23835 snoRNA snoRNA MGP_CASTEiJ_T0011058.1 MGP_CASTEiJ_G0009246.1 mouse_genomes_project 15 61452886 61453085 + Gm27782 misc_RNA misc_RNA MGP_CASTEiJ_T0040463.1 MGP_CASTEiJ_G0021020.1 mouse_genomes_project 15 29501426 29548449 + MGP_CASTEiJ_P0040463 Dap protein_coding protein_coding MGP_CASTEiJ_T0040464.1 MGP_CASTEiJ_G0021020.1 mouse_genomes_project 15 29501500 29549476 + MGP_CASTEiJ_P0040464 Dap protein_coding protein_coding MGP_CASTEiJ_T0040465.1 MGP_CASTEiJ_G0021020.1 mouse_genomes_project 15 29501531 29548592 + MGP_CASTEiJ_P0040465 Dap protein_coding protein_coding MGP_CASTEiJ_T0040466.1 MGP_CASTEiJ_G0021020.1 mouse_genomes_project 15 29544721 29548517 + MGP_CASTEiJ_P0040466 Dap protein_coding protein_coding MGP_CASTEiJ_T0042337.1 MGP_CASTEiJ_G0021589.1 mouse_genomes_project 15 101233671 101236811 + MGP_CASTEiJ_P0042337 Aqp6 protein_coding protein_coding MGP_CASTEiJ_T0006641.1 MGP_CASTEiJ_G0005490.1 mouse_genomes_project 15 105211582 105213856 - Gm28265 lincRNA lincRNA MGP_CASTEiJ_T0100675.1 MGP_CASTEiJ_G0037588.1 mouse_genomes_project 15 40507633 40507735 + Gm24751 snoRNA snoRNA MGP_CASTEiJ_T0041939.1 MGP_CASTEiJ_G0021473.1 mouse_genomes_project 15 90143615 90152626 + MGP_CASTEiJ_P0041939 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041940.1 MGP_CASTEiJ_G0021473.1 mouse_genomes_project 15 90143615 90156557 + MGP_CASTEiJ_P0041940 protein_coding protein_coding MGP_CASTEiJ_T0041941.1 MGP_CASTEiJ_G0021473.1 mouse_genomes_project 15 90143719 90149967 + MGP_CASTEiJ_P0041941 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006591.1 MGP_CASTEiJ_G0005459.1 mouse_genomes_project 15 61403372 61632996 + lincRNA lincRNA MGP_CASTEiJ_T0006592.1 MGP_CASTEiJ_G0005459.1 mouse_genomes_project 15 61403424 61642401 + lincRNA lincRNA MGP_CASTEiJ_T0006593.1 MGP_CASTEiJ_G0005459.1 mouse_genomes_project 15 61403433 61632992 + lincRNA lincRNA MGP_CASTEiJ_T0006594.1 MGP_CASTEiJ_G0005459.1 mouse_genomes_project 15 61403436 61766756 + lincRNA lincRNA MGP_CASTEiJ_T0006595.1 MGP_CASTEiJ_G0005459.1 mouse_genomes_project 15 61403447 61634443 + lincRNA lincRNA MGP_CASTEiJ_T0006596.1 MGP_CASTEiJ_G0005459.1 mouse_genomes_project 15 61404632 61632691 + lincRNA lincRNA MGP_CASTEiJ_T0006597.1 MGP_CASTEiJ_G0005459.1 mouse_genomes_project 15 61474086 61482658 + lincRNA lincRNA MGP_CASTEiJ_T0006598.1 MGP_CASTEiJ_G0005459.1 mouse_genomes_project 15 61557201 61634445 + lincRNA lincRNA MGP_CASTEiJ_T0006599.1 MGP_CASTEiJ_G0005459.1 mouse_genomes_project 15 61600634 61632994 + lincRNA lincRNA MGP_CASTEiJ_T0006600.1 MGP_CASTEiJ_G0005459.1 mouse_genomes_project 15 61608276 61625970 + lincRNA lincRNA MGP_CASTEiJ_T0041899.1 MGP_CASTEiJ_G0021462.1 mouse_genomes_project 15 89626637 89628011 + MGP_CASTEiJ_P0041899 Zdhhc25 protein_coding protein_coding MGP_CASTEiJ_T0042056.1 MGP_CASTEiJ_G0021501.1 mouse_genomes_project 15 91618560 91817228 - MGP_CASTEiJ_P0042056 Cpne8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042057.1 MGP_CASTEiJ_G0021501.1 mouse_genomes_project 15 91618561 91817289 - MGP_CASTEiJ_P0042057 Cpne8 protein_coding protein_coding MGP_CASTEiJ_T0042058.1 MGP_CASTEiJ_G0021501.1 mouse_genomes_project 15 91781290 91817233 - Cpne8 protein_coding retained_intron MGP_CASTEiJ_T0041459.1 MGP_CASTEiJ_G0021330.1 mouse_genomes_project 15 79633423 79683713 - MGP_CASTEiJ_P0041459 Pla2g6 protein_coding protein_coding MGP_CASTEiJ_T0041460.1 MGP_CASTEiJ_G0021330.1 mouse_genomes_project 15 79633423 79683661 - MGP_CASTEiJ_P0041460 Pla2g6 protein_coding protein_coding MGP_CASTEiJ_T0041461.1 MGP_CASTEiJ_G0021330.1 mouse_genomes_project 15 79633423 79683688 - MGP_CASTEiJ_P0041461 Pla2g6 protein_coding protein_coding MGP_CASTEiJ_T0041462.1 MGP_CASTEiJ_G0021330.1 mouse_genomes_project 15 79633423 79683449 - MGP_CASTEiJ_P0041462 Pla2g6 protein_coding protein_coding MGP_CASTEiJ_T0041463.1 MGP_CASTEiJ_G0021330.1 mouse_genomes_project 15 79633427 79683738 - MGP_CASTEiJ_P0041463 Pla2g6 protein_coding protein_coding MGP_CASTEiJ_T0041464.1 MGP_CASTEiJ_G0021330.1 mouse_genomes_project 15 79637323 79654729 - Pla2g6 protein_coding retained_intron MGP_CASTEiJ_T0041465.1 MGP_CASTEiJ_G0021330.1 mouse_genomes_project 15 79653244 79657866 - Pla2g6 protein_coding retained_intron MGP_CASTEiJ_T0041466.1 MGP_CASTEiJ_G0021330.1 mouse_genomes_project 15 79657821 79660947 - Pla2g6 protein_coding retained_intron MGP_CASTEiJ_T0041467.1 MGP_CASTEiJ_G0021330.1 mouse_genomes_project 15 79661003 79683875 - MGP_CASTEiJ_P0041467 Pla2g6 protein_coding protein_coding MGP_CASTEiJ_T0041468.1 MGP_CASTEiJ_G0021330.1 mouse_genomes_project 15 79666299 79673958 - Pla2g6 protein_coding retained_intron MGP_CASTEiJ_T0041469.1 MGP_CASTEiJ_G0021330.1 mouse_genomes_project 15 79666367 79679082 - MGP_CASTEiJ_P0041469 Pla2g6 protein_coding protein_coding MGP_CASTEiJ_T0041470.1 MGP_CASTEiJ_G0021330.1 mouse_genomes_project 15 79673816 79679993 - MGP_CASTEiJ_P0041470 Pla2g6 protein_coding protein_coding MGP_CASTEiJ_T0100659.1 MGP_CASTEiJ_G0037572.1 mouse_genomes_project 15 17979629 17979759 + Gm25976 snoRNA snoRNA MGP_CASTEiJ_T0041636.1 MGP_CASTEiJ_G0021374.1 mouse_genomes_project 15 82195942 82223817 + MGP_CASTEiJ_P0041636 L3mbtl2 protein_coding protein_coding MGP_CASTEiJ_T0041637.1 MGP_CASTEiJ_G0021374.1 mouse_genomes_project 15 82195987 82223807 + MGP_CASTEiJ_P0041637 L3mbtl2 protein_coding protein_coding MGP_CASTEiJ_T0041638.1 MGP_CASTEiJ_G0021374.1 mouse_genomes_project 15 82196007 82223807 + L3mbtl2 protein_coding retained_intron MGP_CASTEiJ_T0041639.1 MGP_CASTEiJ_G0021374.1 mouse_genomes_project 15 82196009 82223801 + L3mbtl2 protein_coding processed_transcript MGP_CASTEiJ_T0041640.1 MGP_CASTEiJ_G0021374.1 mouse_genomes_project 15 82196009 82223817 + MGP_CASTEiJ_P0041640 L3mbtl2 protein_coding protein_coding MGP_CASTEiJ_T0041641.1 MGP_CASTEiJ_G0021374.1 mouse_genomes_project 15 82196054 82217560 + L3mbtl2 protein_coding processed_transcript MGP_CASTEiJ_T0041642.1 MGP_CASTEiJ_G0021374.1 mouse_genomes_project 15 82200517 82202230 + L3mbtl2 protein_coding retained_intron MGP_CASTEiJ_T0041643.1 MGP_CASTEiJ_G0021374.1 mouse_genomes_project 15 82200586 82209276 + L3mbtl2 protein_coding processed_transcript MGP_CASTEiJ_T0041644.1 MGP_CASTEiJ_G0021374.1 mouse_genomes_project 15 82209164 82210932 + MGP_CASTEiJ_P0041644 L3mbtl2 protein_coding protein_coding MGP_CASTEiJ_T0041646.1 MGP_CASTEiJ_G0021374.1 mouse_genomes_project 15 82217503 82219349 + L3mbtl2 protein_coding retained_intron MGP_CASTEiJ_T0041647.1 MGP_CASTEiJ_G0021374.1 mouse_genomes_project 15 82221525 82222684 + L3mbtl2 protein_coding retained_intron MGP_CASTEiJ_T0042617.1 MGP_CASTEiJ_G0021682.1 mouse_genomes_project 15 104781627 104797807 - MGP_CASTEiJ_P0042617 Calcoco1 protein_coding protein_coding MGP_CASTEiJ_T0042618.1 MGP_CASTEiJ_G0021682.1 mouse_genomes_project 15 104781821 104784947 - MGP_CASTEiJ_P0042618 Calcoco1 protein_coding protein_coding MGP_CASTEiJ_T0042619.1 MGP_CASTEiJ_G0021682.1 mouse_genomes_project 15 104782647 104797760 - MGP_CASTEiJ_P0042619 Calcoco1 protein_coding protein_coding MGP_CASTEiJ_T0042620.1 MGP_CASTEiJ_G0021682.1 mouse_genomes_project 15 104785885 104791451 - Calcoco1 protein_coding retained_intron MGP_CASTEiJ_T0041852.1 MGP_CASTEiJ_G0021447.1 mouse_genomes_project 15 86029293 86119576 + MGP_CASTEiJ_P0041852 Fbln1 protein_coding protein_coding MGP_CASTEiJ_T0041853.1 MGP_CASTEiJ_G0021447.1 mouse_genomes_project 15 86029349 86081495 + MGP_CASTEiJ_P0041853 Fbln1 protein_coding protein_coding MGP_CASTEiJ_T0041854.1 MGP_CASTEiJ_G0021447.1 mouse_genomes_project 15 86029441 86115374 + MGP_CASTEiJ_P0041854 Fbln1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041855.1 MGP_CASTEiJ_G0021447.1 mouse_genomes_project 15 86093050 86095069 + Fbln1 protein_coding processed_transcript MGP_CASTEiJ_T0040976.1 MGP_CASTEiJ_G0021194.1 mouse_genomes_project 15 74688531 74693697 - MGP_CASTEiJ_P0040976 Lynx1 protein_coding protein_coding MGP_CASTEiJ_T0040977.1 MGP_CASTEiJ_G0021194.1 mouse_genomes_project 15 74692251 74693665 - MGP_CASTEiJ_P0040977 Lynx1 protein_coding protein_coding MGP_CASTEiJ_T0040978.1 MGP_CASTEiJ_G0021194.1 mouse_genomes_project 15 74692969 74693675 - Lynx1 protein_coding retained_intron MGP_CASTEiJ_T0099437.1 MGP_CASTEiJ_G0036350.1 mouse_genomes_project 15 48352119 48352225 + Gm23848 snRNA snRNA MGP_CASTEiJ_T0040198.1 MGP_CASTEiJ_G0020947.1 mouse_genomes_project 15 1626226 1699034 + MGP_CASTEiJ_P0040198 C6 protein_coding protein_coding MGP_CASTEiJ_T0040199.1 MGP_CASTEiJ_G0020947.1 mouse_genomes_project 15 1626229 1636531 + MGP_CASTEiJ_P0040199 C6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040200.1 MGP_CASTEiJ_G0020947.1 mouse_genomes_project 15 1626267 1656462 + MGP_CASTEiJ_P0040200 C6 protein_coding protein_coding MGP_CASTEiJ_T0040201.1 MGP_CASTEiJ_G0020947.1 mouse_genomes_project 15 1626267 1698681 + MGP_CASTEiJ_P0040201 C6 protein_coding protein_coding MGP_CASTEiJ_T0040202.1 MGP_CASTEiJ_G0020947.1 mouse_genomes_project 15 1626335 1711847 + MGP_CASTEiJ_P0040202 C6 protein_coding protein_coding MGP_CASTEiJ_T0040203.1 MGP_CASTEiJ_G0020947.1 mouse_genomes_project 15 1637311 1686797 + MGP_CASTEiJ_P0040203 C6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040204.1 MGP_CASTEiJ_G0020947.1 mouse_genomes_project 15 1663387 1686704 + C6 protein_coding processed_transcript MGP_CASTEiJ_T0006633.1 MGP_CASTEiJ_G0005483.1 mouse_genomes_project 15 102495977 102496951 - C330013E15Rik lincRNA lincRNA MGP_CASTEiJ_T0012731.1 MGP_CASTEiJ_G0010894.1 mouse_genomes_project 15 91868052 91868418 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040529.1 MGP_CASTEiJ_G0021043.1 mouse_genomes_project 15 33198965 33481456 - MGP_CASTEiJ_P0040529 Stk3 protein_coding protein_coding MGP_CASTEiJ_T0040530.1 MGP_CASTEiJ_G0021043.1 mouse_genomes_project 15 33199142 33481400 - MGP_CASTEiJ_P0040530 Stk3 protein_coding protein_coding MGP_CASTEiJ_T0040531.1 MGP_CASTEiJ_G0021043.1 mouse_genomes_project 15 33284018 33324685 - Stk3 protein_coding retained_intron MGP_CASTEiJ_T0040532.1 MGP_CASTEiJ_G0021043.1 mouse_genomes_project 15 33400608 33481319 - MGP_CASTEiJ_P0040532 Stk3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009807.1 MGP_CASTEiJ_G0007995.1 mouse_genomes_project 15 83409155 83409215 - Gm27618 miRNA miRNA MGP_CASTEiJ_T0040671.1 MGP_CASTEiJ_G0021094.1 mouse_genomes_project 15 49541265 49794302 - MGP_CASTEiJ_P0040671 Trps1 protein_coding protein_coding MGP_CASTEiJ_T0040672.1 MGP_CASTEiJ_G0021094.1 mouse_genomes_project 15 49544932 49794324 - MGP_CASTEiJ_P0040672 Trps1 protein_coding protein_coding MGP_CASTEiJ_T0040673.1 MGP_CASTEiJ_G0021094.1 mouse_genomes_project 15 49544950 49793662 - MGP_CASTEiJ_P0040673 Trps1 protein_coding protein_coding MGP_CASTEiJ_T0040674.1 MGP_CASTEiJ_G0021094.1 mouse_genomes_project 15 49546957 49793659 - MGP_CASTEiJ_P0040674 Trps1 protein_coding protein_coding MGP_CASTEiJ_T0040675.1 MGP_CASTEiJ_G0021094.1 mouse_genomes_project 15 49546958 49786770 - MGP_CASTEiJ_P0040675 Trps1 protein_coding protein_coding MGP_CASTEiJ_T0040676.1 MGP_CASTEiJ_G0021094.1 mouse_genomes_project 15 49546974 49794621 - MGP_CASTEiJ_P0040676 Trps1 protein_coding protein_coding MGP_CASTEiJ_T0040677.1 MGP_CASTEiJ_G0021094.1 mouse_genomes_project 15 49720694 49728724 - MGP_CASTEiJ_P0040677 Trps1 protein_coding protein_coding MGP_CASTEiJ_T0040678.1 MGP_CASTEiJ_G0021094.1 mouse_genomes_project 15 49748093 49795043 - MGP_CASTEiJ_P0040678 Trps1 protein_coding protein_coding MGP_CASTEiJ_T0100673.1 MGP_CASTEiJ_G0037586.1 mouse_genomes_project 15 36520311 36520447 + Gm22353 snoRNA snoRNA MGP_CASTEiJ_T0042127.1 MGP_CASTEiJ_G0021519.1 mouse_genomes_project 15 95986282 96489302 + MGP_CASTEiJ_P0042127 Tmem117 protein_coding protein_coding MGP_CASTEiJ_T0003515.1 MGP_CASTEiJ_G0003191.1 mouse_genomes_project 15 100234142 100235251 + Gm29331 antisense antisense MGP_CASTEiJ_T0040790.1 MGP_CASTEiJ_G0021141.1 mouse_genomes_project 15 58624700 58682114 - MGP_CASTEiJ_P0040790 E430025E21Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0040792.1 MGP_CASTEiJ_G0021141.1 mouse_genomes_project 15 58637749 58682236 - MGP_CASTEiJ_P0040792 E430025E21Rik protein_coding protein_coding MGP_CASTEiJ_T0040599.1 MGP_CASTEiJ_G0021064.1 mouse_genomes_project 15 36701744 36709268 + MGP_CASTEiJ_P0040599 Odf1 protein_coding protein_coding MGP_CASTEiJ_T0041425.1 MGP_CASTEiJ_G0021324.1 mouse_genomes_project 15 79466877 79472445 - 1700088E04Rik protein_coding processed_transcript MGP_CASTEiJ_T0041426.1 MGP_CASTEiJ_G0021324.1 mouse_genomes_project 15 79472184 79478685 - MGP_CASTEiJ_P0041426 1700088E04Rik protein_coding protein_coding MGP_CASTEiJ_T0041427.1 MGP_CASTEiJ_G0021324.1 mouse_genomes_project 15 79472184 79478737 - MGP_CASTEiJ_P0041427 1700088E04Rik protein_coding protein_coding MGP_CASTEiJ_T0041428.1 MGP_CASTEiJ_G0021324.1 mouse_genomes_project 15 79472190 79478751 - MGP_CASTEiJ_P0041428 1700088E04Rik protein_coding protein_coding MGP_CASTEiJ_T0041429.1 MGP_CASTEiJ_G0021324.1 mouse_genomes_project 15 79472520 79478728 - MGP_CASTEiJ_P0041429 1700088E04Rik protein_coding protein_coding MGP_CASTEiJ_T0041430.1 MGP_CASTEiJ_G0021324.1 mouse_genomes_project 15 79472537 79474234 - 1700088E04Rik protein_coding processed_transcript MGP_CASTEiJ_T0041431.1 MGP_CASTEiJ_G0021324.1 mouse_genomes_project 15 79472545 79478732 - MGP_CASTEiJ_P0041431 1700088E04Rik protein_coding protein_coding MGP_CASTEiJ_T0041432.1 MGP_CASTEiJ_G0021324.1 mouse_genomes_project 15 79472584 79478703 - MGP_CASTEiJ_P0041432 1700088E04Rik protein_coding protein_coding MGP_CASTEiJ_T0041433.1 MGP_CASTEiJ_G0021324.1 mouse_genomes_project 15 79472610 79478680 - MGP_CASTEiJ_P0041433 1700088E04Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041434.1 MGP_CASTEiJ_G0021324.1 mouse_genomes_project 15 79474656 79478701 - MGP_CASTEiJ_P0041434 1700088E04Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041435.1 MGP_CASTEiJ_G0021324.1 mouse_genomes_project 15 79474944 79476792 - MGP_CASTEiJ_P0041435 1700088E04Rik protein_coding protein_coding MGP_CASTEiJ_T0041436.1 MGP_CASTEiJ_G0021324.1 mouse_genomes_project 15 79474947 79478751 - MGP_CASTEiJ_P0041436 1700088E04Rik protein_coding protein_coding MGP_CASTEiJ_T0041437.1 MGP_CASTEiJ_G0021324.1 mouse_genomes_project 15 79474949 79478476 - MGP_CASTEiJ_P0041437 1700088E04Rik protein_coding protein_coding MGP_CASTEiJ_T0003513.1 MGP_CASTEiJ_G0003189.1 mouse_genomes_project 15 99684209 99686698 + Gm26513 antisense antisense MGP_CASTEiJ_T0100683.1 MGP_CASTEiJ_G0037596.1 mouse_genomes_project 15 57350169 57350296 + Gm22488 snoRNA snoRNA MGP_CASTEiJ_T0041968.1 MGP_CASTEiJ_G0021480.1 mouse_genomes_project 15 90280019 90356146 + MGP_CASTEiJ_P0041968 Ppp6r2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041969.1 MGP_CASTEiJ_G0021480.1 mouse_genomes_project 15 90313160 90356024 + MGP_CASTEiJ_P0041969 Ppp6r2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041970.1 MGP_CASTEiJ_G0021480.1 mouse_genomes_project 15 90320216 90356137 + MGP_CASTEiJ_P0041970 Ppp6r2 protein_coding protein_coding MGP_CASTEiJ_T0040687.1 MGP_CASTEiJ_G0021101.1 mouse_genomes_project 15 52043717 52349393 - MGP_CASTEiJ_P0040687 Ext1 protein_coding protein_coding MGP_CASTEiJ_T0040688.1 MGP_CASTEiJ_G0021101.1 mouse_genomes_project 15 52048335 52348893 - MGP_CASTEiJ_P0040688 Ext1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040689.1 MGP_CASTEiJ_G0021101.1 mouse_genomes_project 15 52062649 52185295 - MGP_CASTEiJ_P0040689 Ext1 protein_coding protein_coding MGP_CASTEiJ_T0040690.1 MGP_CASTEiJ_G0021101.1 mouse_genomes_project 15 52070297 52087916 - Ext1 protein_coding retained_intron MGP_CASTEiJ_T0041329.1 MGP_CASTEiJ_G0021291.1 mouse_genomes_project 15 78092956 78093609 - Txn2 protein_coding processed_transcript MGP_CASTEiJ_T0041330.1 MGP_CASTEiJ_G0021291.1 mouse_genomes_project 15 78092956 78106618 - MGP_CASTEiJ_P0041330 Txn2 protein_coding protein_coding MGP_CASTEiJ_T0041331.1 MGP_CASTEiJ_G0021291.1 mouse_genomes_project 15 78092956 78105442 - MGP_CASTEiJ_P0041331 Txn2 protein_coding protein_coding MGP_CASTEiJ_T0041332.1 MGP_CASTEiJ_G0021291.1 mouse_genomes_project 15 78093113 78105325 - MGP_CASTEiJ_P0041332 Txn2 protein_coding protein_coding MGP_CASTEiJ_T0041333.1 MGP_CASTEiJ_G0021291.1 mouse_genomes_project 15 78093119 78106580 - MGP_CASTEiJ_P0041333 Txn2 protein_coding protein_coding MGP_CASTEiJ_T0041334.1 MGP_CASTEiJ_G0021291.1 mouse_genomes_project 15 78097446 78105332 - MGP_CASTEiJ_P0041334 Txn2 protein_coding protein_coding MGP_CASTEiJ_T0041335.1 MGP_CASTEiJ_G0021291.1 mouse_genomes_project 15 78100958 78106586 - MGP_CASTEiJ_P0041335 Txn2 protein_coding protein_coding MGP_CASTEiJ_T0041336.1 MGP_CASTEiJ_G0021291.1 mouse_genomes_project 15 78103989 78106609 - MGP_CASTEiJ_P0041336 Txn2 protein_coding protein_coding MGP_CASTEiJ_T0003487.1 MGP_CASTEiJ_G0003170.1 mouse_genomes_project 15 65569643 65591816 + Gm27153 antisense antisense MGP_CASTEiJ_T0100658.1 MGP_CASTEiJ_G0037571.1 mouse_genomes_project 15 13332719 13332847 + Gm25550 snoRNA snoRNA MGP_CASTEiJ_T0099435.1 MGP_CASTEiJ_G0036348.1 mouse_genomes_project 15 47360979 47361112 + Gm25007 snRNA snRNA MGP_CASTEiJ_T0040597.1 MGP_CASTEiJ_G0021063.1 mouse_genomes_project 15 36423827 36541379 - MGP_CASTEiJ_P0040597 Ubr5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040598.1 MGP_CASTEiJ_G0021063.1 mouse_genomes_project 15 36424706 36541814 - MGP_CASTEiJ_P0040598 Ubr5 protein_coding protein_coding MGP_CASTEiJ_T0009776.1 MGP_CASTEiJ_G0007964.1 mouse_genomes_project 15 37737092 37737201 - Gm24098 miRNA miRNA MGP_CASTEiJ_T0101537.1 MGP_CASTEiJ_G0038424.1 mouse_genomes_project 15 31709287 31711270 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101538.1 MGP_CASTEiJ_G0038424.1 mouse_genomes_project 15 31710499 31711233 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0042194.1 MGP_CASTEiJ_G0021540.1 mouse_genomes_project 15 99558312 99589589 - MGP_CASTEiJ_P0042194 Col2a1 protein_coding protein_coding MGP_CASTEiJ_T0042195.1 MGP_CASTEiJ_G0021540.1 mouse_genomes_project 15 99558312 99589551 - MGP_CASTEiJ_P0042195 Col2a1 protein_coding protein_coding MGP_CASTEiJ_T0042196.1 MGP_CASTEiJ_G0021540.1 mouse_genomes_project 15 99569003 99571634 - Col2a1 protein_coding retained_intron MGP_CASTEiJ_T0042197.1 MGP_CASTEiJ_G0021540.1 mouse_genomes_project 15 99570823 99574595 - Col2a1 protein_coding processed_transcript MGP_CASTEiJ_T0042198.1 MGP_CASTEiJ_G0021540.1 mouse_genomes_project 15 99579708 99584375 - Col2a1 protein_coding retained_intron MGP_CASTEiJ_T0042199.1 MGP_CASTEiJ_G0021540.1 mouse_genomes_project 15 99579859 99584604 - Col2a1 protein_coding processed_transcript MGP_CASTEiJ_T0042200.1 MGP_CASTEiJ_G0021540.1 mouse_genomes_project 15 99583215 99586794 - Col2a1 protein_coding processed_transcript MGP_CASTEiJ_T0042201.1 MGP_CASTEiJ_G0021540.1 mouse_genomes_project 15 99583421 99589529 - MGP_CASTEiJ_P0042201 Col2a1 protein_coding protein_coding MGP_CASTEiJ_T0042202.1 MGP_CASTEiJ_G0021540.1 mouse_genomes_project 15 99585153 99589551 - Col2a1 protein_coding retained_intron MGP_CASTEiJ_T0012690.1 MGP_CASTEiJ_G0010853.1 mouse_genomes_project 15 34496890 34497825 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040797.1 MGP_CASTEiJ_G0021144.1 mouse_genomes_project 15 59329002 59329929 + MGP_CASTEiJ_P0040797 Gm12355 protein_coding protein_coding MGP_CASTEiJ_T0041546.1 MGP_CASTEiJ_G0021350.1 mouse_genomes_project 15 80397095 80415933 - MGP_CASTEiJ_P0041546 Pdgfb protein_coding protein_coding MGP_CASTEiJ_T0100682.1 MGP_CASTEiJ_G0037595.1 mouse_genomes_project 15 57228748 57228884 - Gm22299 snoRNA snoRNA MGP_CASTEiJ_T0041076.1 MGP_CASTEiJ_G0021228.1 mouse_genomes_project 15 76106745 76108802 + Mapk15 protein_coding processed_transcript MGP_CASTEiJ_T0041077.1 MGP_CASTEiJ_G0021228.1 mouse_genomes_project 15 76106745 76112156 + MGP_CASTEiJ_P0041077 Mapk15 protein_coding protein_coding MGP_CASTEiJ_T0041078.1 MGP_CASTEiJ_G0021228.1 mouse_genomes_project 15 76108916 76112156 + Mapk15 protein_coding retained_intron MGP_CASTEiJ_T0041079.1 MGP_CASTEiJ_G0021228.1 mouse_genomes_project 15 76109716 76112156 + Mapk15 protein_coding processed_transcript MGP_CASTEiJ_T0099430.1 MGP_CASTEiJ_G0036343.1 mouse_genomes_project 15 34584433 34584490 + Gm23754 snRNA snRNA MGP_CASTEiJ_T0040516.1 MGP_CASTEiJ_G0021039.1 mouse_genomes_project 15 32791791 32804273 - MGP_CASTEiJ_P0040516 Rida protein_coding protein_coding MGP_CASTEiJ_T0040517.1 MGP_CASTEiJ_G0021039.1 mouse_genomes_project 15 32791794 32798875 - Rida protein_coding retained_intron MGP_CASTEiJ_T0040518.1 MGP_CASTEiJ_G0021039.1 mouse_genomes_project 15 32792664 32804189 - Rida protein_coding retained_intron MGP_CASTEiJ_T0040519.1 MGP_CASTEiJ_G0021039.1 mouse_genomes_project 15 32793374 32798761 - Rida protein_coding processed_transcript MGP_CASTEiJ_T0100662.1 MGP_CASTEiJ_G0037575.1 mouse_genomes_project 15 25134135 25134266 - Gm23903 snoRNA snoRNA MGP_CASTEiJ_T0040504.1 MGP_CASTEiJ_G0021035.1 mouse_genomes_project 15 32594384 32734143 + MGP_CASTEiJ_P0040504 Matn2 protein_coding protein_coding MGP_CASTEiJ_T0040505.1 MGP_CASTEiJ_G0021035.1 mouse_genomes_project 15 32594385 32734147 + MGP_CASTEiJ_P0040505 Matn2 protein_coding protein_coding MGP_CASTEiJ_T0040506.1 MGP_CASTEiJ_G0021035.1 mouse_genomes_project 15 32634392 32733692 + MGP_CASTEiJ_P0040506 Matn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100660.1 MGP_CASTEiJ_G0037573.1 mouse_genomes_project 15 18709807 18709935 + Gm25711 snoRNA snoRNA MGP_CASTEiJ_T0040734.1 MGP_CASTEiJ_G0021117.1 mouse_genomes_project 15 55810874 55842971 - MGP_CASTEiJ_P0040734 Has2 protein_coding protein_coding MGP_CASTEiJ_T0040726.1 MGP_CASTEiJ_G0021115.1 mouse_genomes_project 15 54661416 54716616 + MGP_CASTEiJ_P0040726 Mtbp protein_coding protein_coding MGP_CASTEiJ_T0040727.1 MGP_CASTEiJ_G0021115.1 mouse_genomes_project 15 54661441 54735245 + MGP_CASTEiJ_P0040727 Mtbp protein_coding protein_coding MGP_CASTEiJ_T0040728.1 MGP_CASTEiJ_G0021115.1 mouse_genomes_project 15 54661556 54673220 + MGP_CASTEiJ_P0040728 Mtbp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040729.1 MGP_CASTEiJ_G0021115.1 mouse_genomes_project 15 54726406 54728759 + Mtbp protein_coding retained_intron MGP_CASTEiJ_T0040730.1 MGP_CASTEiJ_G0021115.1 mouse_genomes_project 15 54730273 54735237 + Mtbp protein_coding processed_transcript MGP_CASTEiJ_T0042409.1 MGP_CASTEiJ_G0021615.1 mouse_genomes_project 15 102380156 102434651 - MGP_CASTEiJ_P0042409 Tfcp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042410.1 MGP_CASTEiJ_G0021615.1 mouse_genomes_project 15 102382617 102435213 - MGP_CASTEiJ_P0042410 Tfcp2 protein_coding protein_coding MGP_CASTEiJ_T0041229.1 MGP_CASTEiJ_G0021258.1 mouse_genomes_project 15 76736755 76749068 - MGP_CASTEiJ_P0041229 Cpsf1 protein_coding protein_coding MGP_CASTEiJ_T0042338.1 MGP_CASTEiJ_G0021590.1 mouse_genomes_project 15 101242500 101273855 - MGP_CASTEiJ_P0042338 Faim2 protein_coding protein_coding MGP_CASTEiJ_T0041900.1 MGP_CASTEiJ_G0021463.1 mouse_genomes_project 15 89720128 89772483 - MGP_CASTEiJ_P0041900 Brd1 protein_coding protein_coding MGP_CASTEiJ_T0041901.1 MGP_CASTEiJ_G0021463.1 mouse_genomes_project 15 89720637 89770895 - MGP_CASTEiJ_P0041901 Brd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041902.1 MGP_CASTEiJ_G0021463.1 mouse_genomes_project 15 89721122 89767750 - MGP_CASTEiJ_P0041902 Brd1 protein_coding protein_coding MGP_CASTEiJ_T0041903.1 MGP_CASTEiJ_G0021463.1 mouse_genomes_project 15 89728898 89733673 - Brd1 protein_coding processed_transcript MGP_CASTEiJ_T0041904.1 MGP_CASTEiJ_G0021463.1 mouse_genomes_project 15 89731655 89772480 - MGP_CASTEiJ_P0041904 Brd1 protein_coding protein_coding MGP_CASTEiJ_T0041905.1 MGP_CASTEiJ_G0021463.1 mouse_genomes_project 15 89746715 89752993 - Brd1 protein_coding processed_transcript MGP_CASTEiJ_T0041906.1 MGP_CASTEiJ_G0021463.1 mouse_genomes_project 15 89747248 89750849 - Brd1 protein_coding processed_transcript MGP_CASTEiJ_T0040449.1 MGP_CASTEiJ_G0021013.1 mouse_genomes_project 15 24584391 24775178 - MGP_CASTEiJ_P0040449 Fbxl7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040450.1 MGP_CASTEiJ_G0021013.1 mouse_genomes_project 15 24584451 24965243 - MGP_CASTEiJ_P0040450 Fbxl7 protein_coding protein_coding MGP_CASTEiJ_T0042275.1 MGP_CASTEiJ_G0021569.1 mouse_genomes_project 15 100476981 100497338 - MGP_CASTEiJ_P0042275 Prkag1 protein_coding protein_coding MGP_CASTEiJ_T0040699.1 MGP_CASTEiJ_G0021107.1 mouse_genomes_project 15 53778709 53787949 + MGP_CASTEiJ_P0040699 Nov protein_coding protein_coding MGP_CASTEiJ_T0040700.1 MGP_CASTEiJ_G0021107.1 mouse_genomes_project 15 53778913 53787679 + MGP_CASTEiJ_P0040700 Nov protein_coding unknown_likely_coding MGP_CASTEiJ_T0041733.1 MGP_CASTEiJ_G0021405.1 mouse_genomes_project 15 83005424 83012092 - MGP_CASTEiJ_P0041733 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040166.1 MGP_CASTEiJ_G0020939.1 mouse_genomes_project 15 165225 173342 + MGP_CASTEiJ_P0040166 protein_coding protein_coding MGP_CASTEiJ_T0040167.1 MGP_CASTEiJ_G0020939.1 mouse_genomes_project 15 168274 178066 + MGP_CASTEiJ_P0040167 protein_coding protein_coding MGP_CASTEiJ_T0040168.1 MGP_CASTEiJ_G0020939.1 mouse_genomes_project 15 168318 173295 + MGP_CASTEiJ_P0040168 protein_coding protein_coding MGP_CASTEiJ_T0040169.1 MGP_CASTEiJ_G0020939.1 mouse_genomes_project 15 168421 178065 + MGP_CASTEiJ_P0040169 protein_coding protein_coding MGP_CASTEiJ_T0040170.1 MGP_CASTEiJ_G0020939.1 mouse_genomes_project 15 168498 173224 + MGP_CASTEiJ_P0040170 protein_coding protein_coding MGP_CASTEiJ_T0040171.1 MGP_CASTEiJ_G0020939.1 mouse_genomes_project 15 168499 172682 + protein_coding retained_intron MGP_CASTEiJ_T0040172.1 MGP_CASTEiJ_G0020939.1 mouse_genomes_project 15 169633 174829 + MGP_CASTEiJ_P0040172 protein_coding protein_coding MGP_CASTEiJ_T0042440.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102760669 102834740 + MGP_CASTEiJ_P0042440 Scn8a protein_coding protein_coding MGP_CASTEiJ_T0042441.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102760669 102834740 + MGP_CASTEiJ_P0042441 Scn8a protein_coding protein_coding MGP_CASTEiJ_T0042442.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102761456 102915200 + MGP_CASTEiJ_P0042442 Scn8a protein_coding protein_coding MGP_CASTEiJ_T0042443.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102761472 102834740 + MGP_CASTEiJ_P0042443 Scn8a protein_coding protein_coding MGP_CASTEiJ_T0042444.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102761494 102950003 + MGP_CASTEiJ_P0042444 Scn8a protein_coding protein_coding MGP_CASTEiJ_T0042445.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102762581 102950012 + MGP_CASTEiJ_P0042445 Scn8a protein_coding protein_coding MGP_CASTEiJ_T0042446.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102762622 102945770 + MGP_CASTEiJ_P0042446 Scn8a protein_coding protein_coding MGP_CASTEiJ_T0042447.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102762629 102945687 + MGP_CASTEiJ_P0042447 Scn8a protein_coding protein_coding MGP_CASTEiJ_T0042448.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102763097 102834740 + MGP_CASTEiJ_P0042448 Scn8a protein_coding protein_coding MGP_CASTEiJ_T0042449.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102831827 102840197 + MGP_CASTEiJ_P0042449 Scn8a protein_coding protein_coding MGP_CASTEiJ_T0042450.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102834683 102950003 + MGP_CASTEiJ_P0042450 Scn8a protein_coding protein_coding MGP_CASTEiJ_T0042451.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102834718 102839820 + MGP_CASTEiJ_P0042451 Scn8a protein_coding protein_coding MGP_CASTEiJ_T0042452.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102834737 102944764 + MGP_CASTEiJ_P0042452 Scn8a protein_coding protein_coding MGP_CASTEiJ_T0042453.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102856040 102863191 + MGP_CASTEiJ_P0042453 Scn8a protein_coding protein_coding MGP_CASTEiJ_T0042454.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102857433 102861514 + Scn8a protein_coding retained_intron MGP_CASTEiJ_T0042455.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102857468 102861361 + Scn8a protein_coding retained_intron MGP_CASTEiJ_T0042456.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102857597 102905017 + MGP_CASTEiJ_P0042456 Scn8a protein_coding protein_coding MGP_CASTEiJ_T0042457.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102870373 102872014 + Scn8a protein_coding retained_intron MGP_CASTEiJ_T0042458.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102871898 102877606 + Scn8a protein_coding retained_intron MGP_CASTEiJ_T0042459.1 MGP_CASTEiJ_G0021623.1 mouse_genomes_project 15 102920037 102933878 + Scn8a protein_coding processed_transcript MGP_CASTEiJ_T0040551.1 MGP_CASTEiJ_G0021053.1 mouse_genomes_project 15 34914146 34966944 - MGP_CASTEiJ_P0040551 Snx31 protein_coding protein_coding MGP_CASTEiJ_T0040552.1 MGP_CASTEiJ_G0021053.1 mouse_genomes_project 15 34914497 34966939 - MGP_CASTEiJ_P0040552 Snx31 protein_coding protein_coding MGP_CASTEiJ_T0040553.1 MGP_CASTEiJ_G0021053.1 mouse_genomes_project 15 34948010 34957545 - Snx31 protein_coding processed_transcript MGP_CASTEiJ_T0040554.1 MGP_CASTEiJ_G0021053.1 mouse_genomes_project 15 34948010 34958003 - MGP_CASTEiJ_P0040554 Snx31 protein_coding protein_coding MGP_CASTEiJ_T0009828.1 MGP_CASTEiJ_G0008016.1 mouse_genomes_project 15 103689240 103689369 + Gm44323 miRNA miRNA MGP_CASTEiJ_T0041776.1 MGP_CASTEiJ_G0021419.1 mouse_genomes_project 15 83999566 84055180 - MGP_CASTEiJ_P0041776 Arfgap3 protein_coding protein_coding MGP_CASTEiJ_T0041777.1 MGP_CASTEiJ_G0021419.1 mouse_genomes_project 15 84000511 84055082 - MGP_CASTEiJ_P0041777 Arfgap3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0016725.1 MGP_CASTEiJ_G0014617.1 mouse_genomes_project 15 79668786 79670144 + Gm20420 processed_transcript processed_transcript MGP_CASTEiJ_T0042504.1 MGP_CASTEiJ_G0021651.1 mouse_genomes_project 15 103916530 103922728 - MGP_CASTEiJ_P0042504 Krt4 protein_coding protein_coding MGP_CASTEiJ_T0042218.1 MGP_CASTEiJ_G0021544.1 mouse_genomes_project 15 99775349 99786066 - MGP_CASTEiJ_P0042218 protein_coding protein_coding MGP_CASTEiJ_T0042219.1 MGP_CASTEiJ_G0021544.1 mouse_genomes_project 15 99778846 99785969 - protein_coding processed_transcript MGP_CASTEiJ_T0040589.1 MGP_CASTEiJ_G0021062.1 mouse_genomes_project 15 36379235 36416168 - MGP_CASTEiJ_P0040589 Rrm2b protein_coding protein_coding MGP_CASTEiJ_T0040590.1 MGP_CASTEiJ_G0021062.1 mouse_genomes_project 15 36382082 36415956 - MGP_CASTEiJ_P0040590 Rrm2b protein_coding protein_coding MGP_CASTEiJ_T0040591.1 MGP_CASTEiJ_G0021062.1 mouse_genomes_project 15 36382082 36415956 - MGP_CASTEiJ_P0040591 Rrm2b protein_coding protein_coding MGP_CASTEiJ_T0040592.1 MGP_CASTEiJ_G0021062.1 mouse_genomes_project 15 36382082 36415956 - MGP_CASTEiJ_P0040592 Rrm2b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040593.1 MGP_CASTEiJ_G0021062.1 mouse_genomes_project 15 36388432 36415994 - MGP_CASTEiJ_P0040593 Rrm2b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040594.1 MGP_CASTEiJ_G0021062.1 mouse_genomes_project 15 36400266 36410162 - Rrm2b protein_coding retained_intron MGP_CASTEiJ_T0040595.1 MGP_CASTEiJ_G0021062.1 mouse_genomes_project 15 36400371 36415914 - MGP_CASTEiJ_P0040595 Rrm2b protein_coding protein_coding MGP_CASTEiJ_T0040596.1 MGP_CASTEiJ_G0021062.1 mouse_genomes_project 15 36401976 36416378 - MGP_CASTEiJ_P0040596 Rrm2b protein_coding protein_coding MGP_CASTEiJ_T0042489.1 MGP_CASTEiJ_G0021637.1 mouse_genomes_project 15 103492270 103500076 - MGP_CASTEiJ_P0042489 Krt84 protein_coding protein_coding MGP_CASTEiJ_T0041066.1 MGP_CASTEiJ_G0021224.1 mouse_genomes_project 15 76029502 76034536 - MGP_CASTEiJ_P0041066 Tsta3 protein_coding protein_coding MGP_CASTEiJ_T0006563.1 MGP_CASTEiJ_G0005437.1 mouse_genomes_project 15 880435 900229 + Gm2093 lincRNA lincRNA MGP_CASTEiJ_T0003512.1 MGP_CASTEiJ_G0003188.1 mouse_genomes_project 15 99336390 99338585 + Rapgef3os2 antisense antisense MGP_CASTEiJ_T0041547.1 MGP_CASTEiJ_G0021351.1 mouse_genomes_project 15 80482242 80488933 - MGP_CASTEiJ_P0041547 Rpl3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041548.1 MGP_CASTEiJ_G0021351.1 mouse_genomes_project 15 80482251 80488103 - Rpl3 protein_coding retained_intron MGP_CASTEiJ_T0041549.1 MGP_CASTEiJ_G0021351.1 mouse_genomes_project 15 80482252 80488873 - Rpl3 protein_coding retained_intron MGP_CASTEiJ_T0041550.1 MGP_CASTEiJ_G0021351.1 mouse_genomes_project 15 80482253 80488873 - MGP_CASTEiJ_P0041550 Rpl3 protein_coding protein_coding MGP_CASTEiJ_T0041551.1 MGP_CASTEiJ_G0021351.1 mouse_genomes_project 15 80485630 80488853 - MGP_CASTEiJ_P0041551 Rpl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041552.1 MGP_CASTEiJ_G0021351.1 mouse_genomes_project 15 80486415 80497266 - MGP_CASTEiJ_P0041552 Rpl3 protein_coding protein_coding MGP_CASTEiJ_T0041553.1 MGP_CASTEiJ_G0021351.1 mouse_genomes_project 15 80487501 80488857 - Rpl3 protein_coding retained_intron MGP_CASTEiJ_T0009801.1 MGP_CASTEiJ_G0007989.1 mouse_genomes_project 15 82111920 82111974 + Gm23880 miRNA miRNA MGP_CASTEiJ_T0012691.1 MGP_CASTEiJ_G0010854.1 mouse_genomes_project 15 35177799 35196014 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040483.1 MGP_CASTEiJ_G0021027.1 mouse_genomes_project 15 29903512 29926932 + Fam173b protein_coding processed_transcript MGP_CASTEiJ_T0040484.1 MGP_CASTEiJ_G0021027.1 mouse_genomes_project 15 29903778 29923466 + MGP_CASTEiJ_P0040484 Fam173b protein_coding protein_coding MGP_CASTEiJ_T0040485.1 MGP_CASTEiJ_G0021027.1 mouse_genomes_project 15 29903778 29924536 + MGP_CASTEiJ_P0040485 Fam173b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040706.1 MGP_CASTEiJ_G0021110.1 mouse_genomes_project 15 54147733 54164653 - MGP_CASTEiJ_P0040706 Dscc1 protein_coding protein_coding MGP_CASTEiJ_T0040707.1 MGP_CASTEiJ_G0021110.1 mouse_genomes_project 15 54147736 54164642 - MGP_CASTEiJ_P0040707 Dscc1 protein_coding protein_coding MGP_CASTEiJ_T0040708.1 MGP_CASTEiJ_G0021110.1 mouse_genomes_project 15 54155887 54161924 - Dscc1 protein_coding retained_intron MGP_CASTEiJ_T0006585.1 MGP_CASTEiJ_G0005455.1 mouse_genomes_project 15 43427687 43440221 + 2310069G16Rik lincRNA lincRNA MGP_CASTEiJ_T0102087.1 MGP_CASTEiJ_G0038812.1 mouse_genomes_project 15 75234979 75237185 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0042478.1 MGP_CASTEiJ_G0021632.1 mouse_genomes_project 15 103345916 103346857 + Krt7 protein_coding processed_transcript MGP_CASTEiJ_T0042479.1 MGP_CASTEiJ_G0021632.1 mouse_genomes_project 15 103345925 103347269 + Krt7 protein_coding processed_transcript MGP_CASTEiJ_T0042480.1 MGP_CASTEiJ_G0021632.1 mouse_genomes_project 15 103345925 103363894 + Krt7 protein_coding processed_transcript MGP_CASTEiJ_T0042481.1 MGP_CASTEiJ_G0021632.1 mouse_genomes_project 15 103345976 103354339 + MGP_CASTEiJ_P0042481 Krt7 protein_coding protein_coding MGP_CASTEiJ_T0042482.1 MGP_CASTEiJ_G0021632.1 mouse_genomes_project 15 103347275 103366602 + MGP_CASTEiJ_P0042482 Krt7 protein_coding protein_coding MGP_CASTEiJ_T0042483.1 MGP_CASTEiJ_G0021632.1 mouse_genomes_project 15 103347322 103364072 + Krt7 protein_coding retained_intron MGP_CASTEiJ_T0040445.1 MGP_CASTEiJ_G0021012.1 mouse_genomes_project 15 24324216 24327545 + March11 protein_coding retained_intron MGP_CASTEiJ_T0040446.1 MGP_CASTEiJ_G0021012.1 mouse_genomes_project 15 24324232 24440617 + MGP_CASTEiJ_P0040446 March11 protein_coding protein_coding MGP_CASTEiJ_T0040447.1 MGP_CASTEiJ_G0021012.1 mouse_genomes_project 15 24324232 24440617 + MGP_CASTEiJ_P0040447 March11 protein_coding protein_coding MGP_CASTEiJ_T0040448.1 MGP_CASTEiJ_G0021012.1 mouse_genomes_project 15 24414746 24440617 + March11 protein_coding retained_intron MGP_CASTEiJ_T0041287.1 MGP_CASTEiJ_G0021274.1 mouse_genomes_project 15 77055696 77057943 + MGP_CASTEiJ_P0041287 Rpl8 protein_coding protein_coding MGP_CASTEiJ_T0040607.1 MGP_CASTEiJ_G0021067.1 mouse_genomes_project 15 37187930 37218281 + MGP_CASTEiJ_P0040607 Atp6v1c1 protein_coding protein_coding MGP_CASTEiJ_T0099445.1 MGP_CASTEiJ_G0036358.1 mouse_genomes_project 15 63546048 63546154 + Gm25628 snRNA snRNA MGP_CASTEiJ_T0006626.1 MGP_CASTEiJ_G0005479.1 mouse_genomes_project 15 97703908 97713599 - 4833422M21Rik lincRNA lincRNA MGP_CASTEiJ_T0006627.1 MGP_CASTEiJ_G0005479.1 mouse_genomes_project 15 97703908 97728958 - 4833422M21Rik lincRNA lincRNA MGP_CASTEiJ_T0006628.1 MGP_CASTEiJ_G0005479.1 mouse_genomes_project 15 97721791 97728890 - 4833422M21Rik lincRNA lincRNA MGP_CASTEiJ_T0041258.1 MGP_CASTEiJ_G0021267.1 mouse_genomes_project 15 76853011 76859798 - MGP_CASTEiJ_P0041258 Recql4 protein_coding protein_coding MGP_CASTEiJ_T0042221.1 MGP_CASTEiJ_G0021546.1 mouse_genomes_project 15 99855322 99856660 - MGP_CASTEiJ_P0042221 H1fnt protein_coding protein_coding MGP_CASTEiJ_T0041761.1 MGP_CASTEiJ_G0021415.1 mouse_genomes_project 15 83779047 83788342 - MGP_CASTEiJ_P0041761 Rrp7a protein_coding protein_coding MGP_CASTEiJ_T0041762.1 MGP_CASTEiJ_G0021415.1 mouse_genomes_project 15 83782813 83783932 - Rrp7a protein_coding retained_intron MGP_CASTEiJ_T0041763.1 MGP_CASTEiJ_G0021415.1 mouse_genomes_project 15 83784840 83787738 - MGP_CASTEiJ_P0041763 Rrp7a protein_coding protein_coding MGP_CASTEiJ_T0041764.1 MGP_CASTEiJ_G0021415.1 mouse_genomes_project 15 83784866 83788292 - MGP_CASTEiJ_P0041764 Rrp7a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040640.1 MGP_CASTEiJ_G0021080.1 mouse_genomes_project 15 40427638 40432050 - MGP_CASTEiJ_P0040640 Abra protein_coding protein_coding MGP_CASTEiJ_T0042358.1 MGP_CASTEiJ_G0021596.1 mouse_genomes_project 15 101457323 101469396 + MGP_CASTEiJ_P0042358 Smarcd1 protein_coding protein_coding MGP_CASTEiJ_T0012679.1 MGP_CASTEiJ_G0010842.1 mouse_genomes_project 15 670118 671224 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040779.1 MGP_CASTEiJ_G0021135.1 mouse_genomes_project 15 58131216 58135354 + MGP_CASTEiJ_P0040779 Trmt12 protein_coding protein_coding MGP_CASTEiJ_T0040971.1 MGP_CASTEiJ_G0021191.1 mouse_genomes_project 15 74662962 74666760 - MGP_CASTEiJ_P0040971 Slurp1 protein_coding protein_coding MGP_CASTEiJ_T0040972.1 MGP_CASTEiJ_G0021191.1 mouse_genomes_project 15 74665391 74666740 - MGP_CASTEiJ_P0040972 Slurp1 protein_coding protein_coding MGP_CASTEiJ_T0040473.1 MGP_CASTEiJ_G0021023.1 mouse_genomes_project 15 29723624 29738610 - MGP_CASTEiJ_P0040473 Ropn1l protein_coding protein_coding MGP_CASTEiJ_T0040907.1 MGP_CASTEiJ_G0021174.1 mouse_genomes_project 15 72273680 72326444 - MGP_CASTEiJ_P0040907 Kcnk9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040908.1 MGP_CASTEiJ_G0021174.1 mouse_genomes_project 15 72293548 72326386 - MGP_CASTEiJ_P0040908 Kcnk9 protein_coding protein_coding MGP_CASTEiJ_T0012739.1 MGP_CASTEiJ_G0010902.1 mouse_genomes_project 15 105719553 105720978 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040696.1 MGP_CASTEiJ_G0021104.1 mouse_genomes_project 15 53278639 53307077 - MGP_CASTEiJ_P0040696 Tnfrsf11b protein_coding protein_coding MGP_CASTEiJ_T0041127.1 MGP_CASTEiJ_G0021238.1 mouse_genomes_project 15 76396330 76420720 + MGP_CASTEiJ_P0041127 Spatc1 protein_coding protein_coding MGP_CASTEiJ_T0041307.1 MGP_CASTEiJ_G0021282.1 mouse_genomes_project 15 77587050 77731344 - MGP_CASTEiJ_P0041307 protein_coding protein_coding MGP_CASTEiJ_T0041576.1 MGP_CASTEiJ_G0021363.1 mouse_genomes_project 15 81420336 81442408 + MGP_CASTEiJ_P0041576 Adsl protein_coding protein_coding MGP_CASTEiJ_T0041577.1 MGP_CASTEiJ_G0021363.1 mouse_genomes_project 15 81420337 81440463 + MGP_CASTEiJ_P0041577 Adsl protein_coding protein_coding MGP_CASTEiJ_T0041578.1 MGP_CASTEiJ_G0021363.1 mouse_genomes_project 15 81420350 81421964 + Adsl protein_coding retained_intron MGP_CASTEiJ_T0041579.1 MGP_CASTEiJ_G0021363.1 mouse_genomes_project 15 81420358 81440574 + MGP_CASTEiJ_P0041579 Adsl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041580.1 MGP_CASTEiJ_G0021363.1 mouse_genomes_project 15 81420365 81440203 + MGP_CASTEiJ_P0041580 Adsl protein_coding protein_coding MGP_CASTEiJ_T0041581.1 MGP_CASTEiJ_G0021363.1 mouse_genomes_project 15 81420365 81436066 + MGP_CASTEiJ_P0041581 Adsl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041582.1 MGP_CASTEiJ_G0021363.1 mouse_genomes_project 15 81420383 81437578 + MGP_CASTEiJ_P0041582 Adsl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041583.1 MGP_CASTEiJ_G0021363.1 mouse_genomes_project 15 81420388 81427664 + Adsl protein_coding retained_intron MGP_CASTEiJ_T0041584.1 MGP_CASTEiJ_G0021363.1 mouse_genomes_project 15 81420623 81423549 + MGP_CASTEiJ_P0041584 Adsl protein_coding protein_coding MGP_CASTEiJ_T0041585.1 MGP_CASTEiJ_G0021363.1 mouse_genomes_project 15 81433253 81435941 + Adsl protein_coding retained_intron MGP_CASTEiJ_T0041586.1 MGP_CASTEiJ_G0021363.1 mouse_genomes_project 15 81436019 81440210 + MGP_CASTEiJ_P0041586 Adsl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040749.1 MGP_CASTEiJ_G0021122.1 mouse_genomes_project 15 57171437 57196459 + MGP_CASTEiJ_P0040749 Fam83a protein_coding protein_coding MGP_CASTEiJ_T0040750.1 MGP_CASTEiJ_G0021122.1 mouse_genomes_project 15 57171928 57181689 + MGP_CASTEiJ_P0040750 Fam83a protein_coding protein_coding MGP_CASTEiJ_T0040751.1 MGP_CASTEiJ_G0021122.1 mouse_genomes_project 15 57187282 57195535 + Fam83a protein_coding processed_transcript MGP_CASTEiJ_T0101735.1 MGP_CASTEiJ_G0038543.1 mouse_genomes_project 15 75488709 75492935 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101736.1 MGP_CASTEiJ_G0038543.1 mouse_genomes_project 15 75489069 75492542 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0040769.1 MGP_CASTEiJ_G0021128.1 mouse_genomes_project 15 57386408 57428547 - MGP_CASTEiJ_P0040769 Fbxo32 protein_coding protein_coding MGP_CASTEiJ_T0041230.1 MGP_CASTEiJ_G0021259.1 mouse_genomes_project 15 76755644 76760154 - MGP_CASTEiJ_P0041230 Slc39a4 protein_coding protein_coding MGP_CASTEiJ_T0041283.1 MGP_CASTEiJ_G0021271.1 mouse_genomes_project 15 77003015 77022751 - MGP_CASTEiJ_P0041283 Zfp251 protein_coding protein_coding MGP_CASTEiJ_T0042220.1 MGP_CASTEiJ_G0021545.1 mouse_genomes_project 15 99798646 99812115 - protein_coding processed_transcript MGP_CASTEiJ_T0042656.1 MGP_CASTEiJ_G0021700.1 mouse_genomes_project 15 105533122 105552373 - MGP_CASTEiJ_P0042656 Gtsf1 protein_coding protein_coding MGP_CASTEiJ_T0042657.1 MGP_CASTEiJ_G0021700.1 mouse_genomes_project 15 105533173 105550506 - MGP_CASTEiJ_P0042657 Gtsf1 protein_coding protein_coding MGP_CASTEiJ_T0042658.1 MGP_CASTEiJ_G0021700.1 mouse_genomes_project 15 105533173 105550400 - MGP_CASTEiJ_P0042658 Gtsf1 protein_coding protein_coding MGP_CASTEiJ_T0042659.1 MGP_CASTEiJ_G0021700.1 mouse_genomes_project 15 105533176 105551462 - MGP_CASTEiJ_P0042659 Gtsf1 protein_coding protein_coding MGP_CASTEiJ_T0042660.1 MGP_CASTEiJ_G0021700.1 mouse_genomes_project 15 105533198 105552252 - MGP_CASTEiJ_P0042660 Gtsf1 protein_coding protein_coding MGP_CASTEiJ_T0042661.1 MGP_CASTEiJ_G0021700.1 mouse_genomes_project 15 105533210 105552247 - MGP_CASTEiJ_P0042661 Gtsf1 protein_coding protein_coding MGP_CASTEiJ_T0042662.1 MGP_CASTEiJ_G0021700.1 mouse_genomes_project 15 105533229 105552282 - MGP_CASTEiJ_P0042662 Gtsf1 protein_coding protein_coding MGP_CASTEiJ_T0042663.1 MGP_CASTEiJ_G0021700.1 mouse_genomes_project 15 105539500 105552312 - MGP_CASTEiJ_P0042663 Gtsf1 protein_coding protein_coding MGP_CASTEiJ_T0042664.1 MGP_CASTEiJ_G0021700.1 mouse_genomes_project 15 105541917 105552147 - MGP_CASTEiJ_P0042664 Gtsf1 protein_coding protein_coding MGP_CASTEiJ_T0041513.1 MGP_CASTEiJ_G0021345.1 mouse_genomes_project 15 80179312 80197636 - MGP_CASTEiJ_P0041513 Nptxr protein_coding protein_coding MGP_CASTEiJ_T0041514.1 MGP_CASTEiJ_G0021345.1 mouse_genomes_project 15 80179313 80197693 - MGP_CASTEiJ_P0041514 Nptxr protein_coding protein_coding MGP_CASTEiJ_T0041515.1 MGP_CASTEiJ_G0021345.1 mouse_genomes_project 15 80182214 80183942 - Nptxr protein_coding processed_transcript MGP_CASTEiJ_T0042486.1 MGP_CASTEiJ_G0021635.1 mouse_genomes_project 15 103413822 103420886 - MGP_CASTEiJ_P0042486 Krt81 protein_coding protein_coding MGP_CASTEiJ_T0040611.1 MGP_CASTEiJ_G0021070.1 mouse_genomes_project 15 37493446 37504041 + MGP_CASTEiJ_P0040611 Cthrc1 protein_coding protein_coding MGP_CASTEiJ_T0040612.1 MGP_CASTEiJ_G0021070.1 mouse_genomes_project 15 37493592 37498422 + Cthrc1 protein_coding processed_transcript MGP_CASTEiJ_T0040613.1 MGP_CASTEiJ_G0021070.1 mouse_genomes_project 15 37501001 37504043 + Cthrc1 protein_coding retained_intron MGP_CASTEiJ_T0003478.1 MGP_CASTEiJ_G0003163.1 mouse_genomes_project 15 3549334 3600656 - Gm2245 antisense antisense MGP_CASTEiJ_T0041929.1 MGP_CASTEiJ_G0021471.1 mouse_genomes_project 15 90114352 90124451 + MGP_CASTEiJ_P0041929 Panx2 protein_coding protein_coding MGP_CASTEiJ_T0041930.1 MGP_CASTEiJ_G0021471.1 mouse_genomes_project 15 90114365 90125480 + MGP_CASTEiJ_P0041930 Panx2 protein_coding protein_coding MGP_CASTEiJ_T0041931.1 MGP_CASTEiJ_G0021471.1 mouse_genomes_project 15 90124245 90128099 + MGP_CASTEiJ_P0041931 Panx2 protein_coding protein_coding MGP_CASTEiJ_T0042665.1 MGP_CASTEiJ_G0021701.1 mouse_genomes_project 15 105562365 105572546 - MGP_CASTEiJ_P0042665 BC048502 protein_coding protein_coding MGP_CASTEiJ_T0011071.1 MGP_CASTEiJ_G0009259.1 mouse_genomes_project 15 105045650 105045825 + Gm28011 misc_RNA misc_RNA MGP_CASTEiJ_T0041686.1 MGP_CASTEiJ_G0021387.1 mouse_genomes_project 15 82565926 82589466 - MGP_CASTEiJ_P0041686 Desi1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041687.1 MGP_CASTEiJ_G0021387.1 mouse_genomes_project 15 82565926 82589476 - MGP_CASTEiJ_P0041687 Desi1 protein_coding protein_coding MGP_CASTEiJ_T0041688.1 MGP_CASTEiJ_G0021387.1 mouse_genomes_project 15 82567251 82589537 - MGP_CASTEiJ_P0041688 Desi1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041689.1 MGP_CASTEiJ_G0021387.1 mouse_genomes_project 15 82568049 82612733 - Desi1 protein_coding processed_transcript MGP_CASTEiJ_T0041690.1 MGP_CASTEiJ_G0021387.1 mouse_genomes_project 15 82568062 82589324 - MGP_CASTEiJ_P0041690 Desi1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041691.1 MGP_CASTEiJ_G0021387.1 mouse_genomes_project 15 82568125 82589350 - MGP_CASTEiJ_P0041691 Desi1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0100676.1 MGP_CASTEiJ_G0037589.1 mouse_genomes_project 15 42978447 42978573 + Gm24903 snoRNA snoRNA MGP_CASTEiJ_T0040570.1 MGP_CASTEiJ_G0021058.1 mouse_genomes_project 15 35412597 35422651 - MGP_CASTEiJ_P0040570 Zfp706 protein_coding protein_coding MGP_CASTEiJ_T0012714.1 MGP_CASTEiJ_G0010877.1 mouse_genomes_project 15 75850273 75935486 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0041860.1 MGP_CASTEiJ_G0021451.1 mouse_genomes_project 15 86612844 86657832 + Ppara protein_coding processed_transcript MGP_CASTEiJ_T0041861.1 MGP_CASTEiJ_G0021451.1 mouse_genomes_project 15 86613425 86685060 + MGP_CASTEiJ_P0041861 Ppara protein_coding protein_coding MGP_CASTEiJ_T0041862.1 MGP_CASTEiJ_G0021451.1 mouse_genomes_project 15 86613500 86657927 + Ppara protein_coding processed_transcript MGP_CASTEiJ_T0041863.1 MGP_CASTEiJ_G0021451.1 mouse_genomes_project 15 86613637 86685721 + MGP_CASTEiJ_P0041863 Ppara protein_coding protein_coding MGP_CASTEiJ_T0041864.1 MGP_CASTEiJ_G0021451.1 mouse_genomes_project 15 86613992 86684645 + MGP_CASTEiJ_P0041864 Ppara protein_coding protein_coding MGP_CASTEiJ_T0041865.1 MGP_CASTEiJ_G0021451.1 mouse_genomes_project 15 86652363 86657967 + Ppara protein_coding processed_transcript MGP_CASTEiJ_T0041719.1 MGP_CASTEiJ_G0021398.1 mouse_genomes_project 15 82898227 82915718 + MGP_CASTEiJ_P0041719 Wbp2nl protein_coding protein_coding MGP_CASTEiJ_T0041370.1 MGP_CASTEiJ_G0021304.1 mouse_genomes_project 15 78767619 78780065 - MGP_CASTEiJ_P0041370 Il2rb protein_coding protein_coding MGP_CASTEiJ_T0041215.1 MGP_CASTEiJ_G0021256.1 mouse_genomes_project 15 76679134 76683440 + MGP_CASTEiJ_P0041215 Slc52a2 protein_coding protein_coding MGP_CASTEiJ_T0100697.1 MGP_CASTEiJ_G0037610.1 mouse_genomes_project 15 100158101 100158239 - Snora34 snoRNA snoRNA MGP_CASTEiJ_T0042669.1 MGP_CASTEiJ_G0021705.1 mouse_genomes_project 15 105690977 105693290 - MGP_CASTEiJ_P0042669 Glycam1 protein_coding protein_coding MGP_CASTEiJ_T0016720.1 MGP_CASTEiJ_G0014613.1 mouse_genomes_project 15 73531331 73538229 + 1700010B13Rik processed_transcript lincRNA MGP_CASTEiJ_T0016721.1 MGP_CASTEiJ_G0014613.1 mouse_genomes_project 15 73531353 73533081 + 1700010B13Rik processed_transcript retained_intron MGP_CASTEiJ_T0042187.1 MGP_CASTEiJ_G0021538.1 mouse_genomes_project 15 99428002 99484201 - MGP_CASTEiJ_P0042187 Vdr protein_coding protein_coding MGP_CASTEiJ_T0042188.1 MGP_CASTEiJ_G0021538.1 mouse_genomes_project 15 99431110 99433264 - Vdr protein_coding retained_intron MGP_CASTEiJ_T0042189.1 MGP_CASTEiJ_G0021538.1 mouse_genomes_project 15 99450412 99471137 - MGP_CASTEiJ_P0042189 Vdr protein_coding protein_coding MGP_CASTEiJ_T0042190.1 MGP_CASTEiJ_G0021538.1 mouse_genomes_project 15 99450484 99486512 - MGP_CASTEiJ_P0042190 Vdr protein_coding protein_coding MGP_CASTEiJ_T0042191.1 MGP_CASTEiJ_G0021538.1 mouse_genomes_project 15 99459417 99486512 - MGP_CASTEiJ_P0042191 Vdr protein_coding protein_coding MGP_CASTEiJ_T0042192.1 MGP_CASTEiJ_G0021538.1 mouse_genomes_project 15 99459429 99485459 - MGP_CASTEiJ_P0042192 Vdr protein_coding protein_coding MGP_CASTEiJ_T0009799.1 MGP_CASTEiJ_G0007987.1 mouse_genomes_project 15 81095580 81095644 + Mir6957 miRNA miRNA MGP_CASTEiJ_T0012734.1 MGP_CASTEiJ_G0010897.1 mouse_genomes_project 15 93041187 93041726 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0041654.1 MGP_CASTEiJ_G0021378.1 mouse_genomes_project 15 82346589 82373410 + MGP_CASTEiJ_P0041654 Tef protein_coding protein_coding MGP_CASTEiJ_T0041655.1 MGP_CASTEiJ_G0021378.1 mouse_genomes_project 15 82346875 82350215 + Tef protein_coding processed_transcript MGP_CASTEiJ_T0041656.1 MGP_CASTEiJ_G0021378.1 mouse_genomes_project 15 82346898 82349520 + Tef protein_coding processed_transcript MGP_CASTEiJ_T0041657.1 MGP_CASTEiJ_G0021378.1 mouse_genomes_project 15 82346905 82361200 + Tef protein_coding retained_intron MGP_CASTEiJ_T0041658.1 MGP_CASTEiJ_G0021378.1 mouse_genomes_project 15 82346994 82350077 + Tef protein_coding processed_transcript MGP_CASTEiJ_T0041659.1 MGP_CASTEiJ_G0021378.1 mouse_genomes_project 15 82355218 82367821 + MGP_CASTEiJ_P0041659 Tef protein_coding protein_coding MGP_CASTEiJ_T0041660.1 MGP_CASTEiJ_G0021378.1 mouse_genomes_project 15 82355586 82373247 + MGP_CASTEiJ_P0041660 Tef protein_coding protein_coding MGP_CASTEiJ_T0041661.1 MGP_CASTEiJ_G0021378.1 mouse_genomes_project 15 82356334 82359391 + MGP_CASTEiJ_P0041661 Tef protein_coding protein_coding MGP_CASTEiJ_T0041662.1 MGP_CASTEiJ_G0021378.1 mouse_genomes_project 15 82367157 82367948 + Tef protein_coding processed_transcript MGP_CASTEiJ_T0041663.1 MGP_CASTEiJ_G0021378.1 mouse_genomes_project 15 82367507 82370330 + Tef protein_coding retained_intron MGP_CASTEiJ_T0041383.1 MGP_CASTEiJ_G0021311.1 mouse_genomes_project 15 79084074 79113763 - MGP_CASTEiJ_P0041383 Card10 protein_coding protein_coding MGP_CASTEiJ_T0041384.1 MGP_CASTEiJ_G0021311.1 mouse_genomes_project 15 79084858 79113390 - MGP_CASTEiJ_P0041384 Card10 protein_coding protein_coding MGP_CASTEiJ_T0041385.1 MGP_CASTEiJ_G0021311.1 mouse_genomes_project 15 79096723 79099846 - Card10 protein_coding processed_transcript MGP_CASTEiJ_T0009820.1 MGP_CASTEiJ_G0008008.1 mouse_genomes_project 15 97896050 97896142 + Gm25397 miRNA miRNA MGP_CASTEiJ_T0098519.1 MGP_CASTEiJ_G0035450.1 mouse_genomes_project 15 80082243 80082367 + n-R5s40 rRNA rRNA MGP_CASTEiJ_T0041611.1 MGP_CASTEiJ_G0021367.1 mouse_genomes_project 15 81719106 81722541 + MGP_CASTEiJ_P0041611 Mchr1 protein_coding protein_coding MGP_CASTEiJ_T0042624.1 MGP_CASTEiJ_G0021686.1 mouse_genomes_project 15 105064692 105069800 + MGP_CASTEiJ_P0042624 Hoxc10 protein_coding protein_coding MGP_CASTEiJ_T0040205.1 MGP_CASTEiJ_G0020948.1 mouse_genomes_project 15 1777624 1838364 + MGP_CASTEiJ_P0040205 Mroh2b protein_coding protein_coding MGP_CASTEiJ_T0003503.1 MGP_CASTEiJ_G0003181.1 mouse_genomes_project 15 81912183 81916920 - Gm17025 antisense antisense MGP_CASTEiJ_T0098517.1 MGP_CASTEiJ_G0035448.1 mouse_genomes_project 15 31889044 31889175 - Gm24476 rRNA rRNA MGP_CASTEiJ_T0041352.1 MGP_CASTEiJ_G0021298.1 mouse_genomes_project 15 78493461 78528943 - MGP_CASTEiJ_P0041352 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041612.1 MGP_CASTEiJ_G0021368.1 mouse_genomes_project 15 81808493 81852697 - MGP_CASTEiJ_P0041612 Slc25a17 protein_coding protein_coding MGP_CASTEiJ_T0003511.1 MGP_CASTEiJ_G0003187.1 mouse_genomes_project 15 99330452 99336801 + Rapgef3os1 antisense antisense MGP_CASTEiJ_T0041833.1 MGP_CASTEiJ_G0021438.1 mouse_genomes_project 15 85534299 85582985 + MGP_CASTEiJ_P0041833 Arhgap8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041834.1 MGP_CASTEiJ_G0021438.1 mouse_genomes_project 15 85534426 85570100 + Arhgap8 protein_coding retained_intron MGP_CASTEiJ_T0041835.1 MGP_CASTEiJ_G0021438.1 mouse_genomes_project 15 85559416 85576955 + Arhgap8 protein_coding processed_transcript MGP_CASTEiJ_T0041836.1 MGP_CASTEiJ_G0021438.1 mouse_genomes_project 15 85580805 85582848 + Arhgap8 protein_coding retained_intron MGP_CASTEiJ_T0016737.1 MGP_CASTEiJ_G0014623.1 mouse_genomes_project 15 100961109 100977624 + 1700120C14Rik processed_transcript antisense MGP_CASTEiJ_T0016738.1 MGP_CASTEiJ_G0014623.1 mouse_genomes_project 15 100961157 100977364 + 1700120C14Rik processed_transcript antisense MGP_CASTEiJ_T0016739.1 MGP_CASTEiJ_G0014623.1 mouse_genomes_project 15 100961159 100964967 + 1700120C14Rik processed_transcript retained_intron MGP_CASTEiJ_T0012684.1 MGP_CASTEiJ_G0010847.1 mouse_genomes_project 15 7639543 7640810 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0041357.1 MGP_CASTEiJ_G0021301.1 mouse_genomes_project 15 78688441 78695867 + MGP_CASTEiJ_P0041357 Mpst protein_coding protein_coding MGP_CASTEiJ_T0041358.1 MGP_CASTEiJ_G0021301.1 mouse_genomes_project 15 78688530 78695867 + MGP_CASTEiJ_P0041358 Mpst protein_coding protein_coding MGP_CASTEiJ_T0041359.1 MGP_CASTEiJ_G0021301.1 mouse_genomes_project 15 78688836 78695867 + MGP_CASTEiJ_P0041359 Mpst protein_coding protein_coding MGP_CASTEiJ_T0006590.1 MGP_CASTEiJ_G0005458.1 mouse_genomes_project 15 54014735 54025957 + Gm26684 lincRNA lincRNA MGP_CASTEiJ_T0009834.1 MGP_CASTEiJ_G0008022.1 mouse_genomes_project 15 105480202 105480273 - Mir6963 miRNA miRNA MGP_CASTEiJ_T0003490.1 MGP_CASTEiJ_G0003173.1 mouse_genomes_project 15 66491928 66493430 + Gm17035 antisense antisense MGP_CASTEiJ_T0040615.1 MGP_CASTEiJ_G0021072.1 mouse_genomes_project 15 37530598 37567051 + MGP_CASTEiJ_P0040615 Dcaf13 protein_coding protein_coding MGP_CASTEiJ_T0011064.1 MGP_CASTEiJ_G0009252.1 mouse_genomes_project 15 87074384 87074682 + Gm24011 misc_RNA misc_RNA MGP_CASTEiJ_T0041923.1 MGP_CASTEiJ_G0021470.1 mouse_genomes_project 15 90045345 90057449 + Mov10l1 protein_coding retained_intron MGP_CASTEiJ_T0041924.1 MGP_CASTEiJ_G0021470.1 mouse_genomes_project 15 90045345 90109765 + MGP_CASTEiJ_P0041924 Mov10l1 protein_coding protein_coding MGP_CASTEiJ_T0041925.1 MGP_CASTEiJ_G0021470.1 mouse_genomes_project 15 90045359 90074571 + MGP_CASTEiJ_P0041925 Mov10l1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041926.1 MGP_CASTEiJ_G0021470.1 mouse_genomes_project 15 90045430 90109769 + MGP_CASTEiJ_P0041926 Mov10l1 protein_coding protein_coding MGP_CASTEiJ_T0041927.1 MGP_CASTEiJ_G0021470.1 mouse_genomes_project 15 90082610 90085823 + Mov10l1 protein_coding processed_transcript MGP_CASTEiJ_T0041928.1 MGP_CASTEiJ_G0021470.1 mouse_genomes_project 15 90085814 90109765 + MGP_CASTEiJ_P0041928 Mov10l1 protein_coding protein_coding MGP_CASTEiJ_T0099469.1 MGP_CASTEiJ_G0036382.1 mouse_genomes_project 15 101707530 101707665 - Gm23133 snRNA snRNA MGP_CASTEiJ_T0003485.1 MGP_CASTEiJ_G0003168.1 mouse_genomes_project 15 56862487 56863317 - Gm16006 antisense antisense MGP_CASTEiJ_T0042506.1 MGP_CASTEiJ_G0021653.1 mouse_genomes_project 15 103947966 103955408 - MGP_CASTEiJ_P0042506 protein_coding protein_coding MGP_CASTEiJ_T0009786.1 MGP_CASTEiJ_G0007974.1 mouse_genomes_project 15 73175092 73175218 - Gm44310 miRNA miRNA MGP_CASTEiJ_T0042628.1 MGP_CASTEiJ_G0021689.1 mouse_genomes_project 15 105092256 105095468 + MGP_CASTEiJ_P0042628 Hoxc8 protein_coding protein_coding MGP_CASTEiJ_T0042629.1 MGP_CASTEiJ_G0021689.1 mouse_genomes_project 15 105093538 105095756 + Hoxc8 protein_coding retained_intron MGP_CASTEiJ_T0040286.1 MGP_CASTEiJ_G0020969.1 mouse_genomes_project 15 6098026 6142810 + Nadk2 protein_coding processed_transcript MGP_CASTEiJ_T0040287.1 MGP_CASTEiJ_G0020969.1 mouse_genomes_project 15 6098026 6142810 + MGP_CASTEiJ_P0040287 Nadk2 protein_coding protein_coding MGP_CASTEiJ_T0040288.1 MGP_CASTEiJ_G0020969.1 mouse_genomes_project 15 6098026 6142810 + MGP_CASTEiJ_P0040288 Nadk2 protein_coding protein_coding MGP_CASTEiJ_T0040289.1 MGP_CASTEiJ_G0020969.1 mouse_genomes_project 15 6099770 6140690 + MGP_CASTEiJ_P0040289 Nadk2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040290.1 MGP_CASTEiJ_G0020969.1 mouse_genomes_project 15 6099949 6142187 + Nadk2 protein_coding processed_transcript MGP_CASTEiJ_T0040291.1 MGP_CASTEiJ_G0020969.1 mouse_genomes_project 15 6099955 6139516 + Nadk2 protein_coding processed_transcript MGP_CASTEiJ_T0040292.1 MGP_CASTEiJ_G0020969.1 mouse_genomes_project 15 6117244 6139181 + Nadk2 protein_coding processed_transcript MGP_CASTEiJ_T0040293.1 MGP_CASTEiJ_G0020969.1 mouse_genomes_project 15 6132355 6139522 + MGP_CASTEiJ_P0040293 Nadk2 protein_coding protein_coding MGP_CASTEiJ_T0040294.1 MGP_CASTEiJ_G0020969.1 mouse_genomes_project 15 6135164 6139114 + Nadk2 protein_coding retained_intron MGP_CASTEiJ_T0003517.1 MGP_CASTEiJ_G0003193.1 mouse_genomes_project 15 101470947 101481295 - Gm16537 antisense antisense MGP_CASTEiJ_T0040360.1 MGP_CASTEiJ_G0020991.1 mouse_genomes_project 15 9035162 9112566 - MGP_CASTEiJ_P0040360 Npr3 protein_coding protein_coding MGP_CASTEiJ_T0040361.1 MGP_CASTEiJ_G0020991.1 mouse_genomes_project 15 9035176 9112531 - MGP_CASTEiJ_P0040361 Npr3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040362.1 MGP_CASTEiJ_G0020991.1 mouse_genomes_project 15 9035910 9112558 - MGP_CASTEiJ_P0040362 Npr3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003526.1 MGP_CASTEiJ_G0003200.1 mouse_genomes_project 15 103045521 103048807 - antisense antisense MGP_CASTEiJ_T0041785.1 MGP_CASTEiJ_G0021425.1 mouse_genomes_project 15 84291794 84313251 - MGP_CASTEiJ_P0041785 Ttll12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041786.1 MGP_CASTEiJ_G0021425.1 mouse_genomes_project 15 84292179 84313251 - MGP_CASTEiJ_P0041786 Ttll12 protein_coding protein_coding MGP_CASTEiJ_T0041787.1 MGP_CASTEiJ_G0021425.1 mouse_genomes_project 15 84299943 84305138 - Ttll12 protein_coding retained_intron MGP_CASTEiJ_T0012686.1 MGP_CASTEiJ_G0010849.1 mouse_genomes_project 15 10754881 10755621 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012712.1 MGP_CASTEiJ_G0010875.1 mouse_genomes_project 15 73465700 73470043 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006630.1 MGP_CASTEiJ_G0005480.1 mouse_genomes_project 15 100469952 100480078 + B130046B21Rik lincRNA lincRNA MGP_CASTEiJ_T0040350.1 MGP_CASTEiJ_G0020984.1 mouse_genomes_project 15 7689976 7842748 - MGP_CASTEiJ_P0040350 Rai14 protein_coding protein_coding MGP_CASTEiJ_T0040351.1 MGP_CASTEiJ_G0020984.1 mouse_genomes_project 15 7689976 7843837 - MGP_CASTEiJ_P0040351 Rai14 protein_coding protein_coding MGP_CASTEiJ_T0041376.1 MGP_CASTEiJ_G0021308.1 mouse_genomes_project 15 78892443 78918316 + MGP_CASTEiJ_P0041376 Cyth4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041377.1 MGP_CASTEiJ_G0021308.1 mouse_genomes_project 15 78893037 78919746 + MGP_CASTEiJ_P0041377 Cyth4 protein_coding protein_coding MGP_CASTEiJ_T0042557.1 MGP_CASTEiJ_G0021670.1 mouse_genomes_project 15 104408881 104418483 - MGP_CASTEiJ_P0042557 Sp7 protein_coding protein_coding MGP_CASTEiJ_T0006578.1 MGP_CASTEiJ_G0005448.1 mouse_genomes_project 15 36895018 36896341 + Gm26863 lincRNA lincRNA MGP_CASTEiJ_T0041412.1 MGP_CASTEiJ_G0021320.1 mouse_genomes_project 15 79359756 79372532 + MGP_CASTEiJ_P0041412 Gcat protein_coding protein_coding MGP_CASTEiJ_T0041413.1 MGP_CASTEiJ_G0021320.1 mouse_genomes_project 15 79359756 79368351 + MGP_CASTEiJ_P0041413 Gcat protein_coding protein_coding MGP_CASTEiJ_T0041414.1 MGP_CASTEiJ_G0021320.1 mouse_genomes_project 15 79359783 79373642 + MGP_CASTEiJ_P0041414 Gcat protein_coding unknown_likely_coding MGP_CASTEiJ_T0041415.1 MGP_CASTEiJ_G0021320.1 mouse_genomes_project 15 79371885 79373559 + MGP_CASTEiJ_P0041415 Gcat protein_coding protein_coding MGP_CASTEiJ_T0040332.1 MGP_CASTEiJ_G0020980.1 mouse_genomes_project 15 7553793 7580860 - MGP_CASTEiJ_P0040332 Dnajc21 protein_coding protein_coding MGP_CASTEiJ_T0040333.1 MGP_CASTEiJ_G0020980.1 mouse_genomes_project 15 7553802 7572017 - MGP_CASTEiJ_P0040333 Dnajc21 protein_coding protein_coding MGP_CASTEiJ_T0040334.1 MGP_CASTEiJ_G0020980.1 mouse_genomes_project 15 7553803 7557016 - Dnajc21 protein_coding retained_intron MGP_CASTEiJ_T0040335.1 MGP_CASTEiJ_G0020980.1 mouse_genomes_project 15 7554733 7558948 - Dnajc21 protein_coding retained_intron MGP_CASTEiJ_T0040336.1 MGP_CASTEiJ_G0020980.1 mouse_genomes_project 15 7560876 7572552 - Dnajc21 protein_coding retained_intron MGP_CASTEiJ_T0042087.1 MGP_CASTEiJ_G0021508.1 mouse_genomes_project 15 93269512 93487501 + Cntn1 protein_coding retained_intron MGP_CASTEiJ_T0042088.1 MGP_CASTEiJ_G0021508.1 mouse_genomes_project 15 93269512 93588126 + MGP_CASTEiJ_P0042088 Cntn1 protein_coding protein_coding MGP_CASTEiJ_T0042089.1 MGP_CASTEiJ_G0021508.1 mouse_genomes_project 15 93350280 93588112 + MGP_CASTEiJ_P0042089 Cntn1 protein_coding protein_coding MGP_CASTEiJ_T0042090.1 MGP_CASTEiJ_G0021508.1 mouse_genomes_project 15 93388462 93586278 + MGP_CASTEiJ_P0042090 Cntn1 protein_coding protein_coding MGP_CASTEiJ_T0042091.1 MGP_CASTEiJ_G0021508.1 mouse_genomes_project 15 93466809 93563767 + MGP_CASTEiJ_P0042091 Cntn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040196.1 MGP_CASTEiJ_G0020946.1 mouse_genomes_project 15 1293022 1437229 + MGP_CASTEiJ_P0040196 Plcxd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040197.1 MGP_CASTEiJ_G0020946.1 mouse_genomes_project 15 1293035 1499817 + MGP_CASTEiJ_P0040197 Plcxd3 protein_coding protein_coding MGP_CASTEiJ_T0003496.1 MGP_CASTEiJ_G0003178.1 mouse_genomes_project 15 79233099 79234782 - 1700027A07Rik antisense antisense MGP_CASTEiJ_T0041041.1 MGP_CASTEiJ_G0021216.1 mouse_genomes_project 15 75839376 75840456 - MGP_CASTEiJ_P0041041 Mafa protein_coding protein_coding MGP_CASTEiJ_T0102092.1 MGP_CASTEiJ_G0038817.1 mouse_genomes_project 15 75355602 75357976 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0098515.1 MGP_CASTEiJ_G0035446.1 mouse_genomes_project 15 10259287 10259387 + Gm24664 rRNA rRNA MGP_CASTEiJ_T0040454.1 MGP_CASTEiJ_G0021015.1 mouse_genomes_project 15 25712708 25737357 - MGP_CASTEiJ_P0040454 Otulin protein_coding protein_coding MGP_CASTEiJ_T0042228.1 MGP_CASTEiJ_G0021551.1 mouse_genomes_project 15 100023017 100040590 + MGP_CASTEiJ_P0042228 1700031M16Rik protein_coding protein_coding MGP_CASTEiJ_T0042229.1 MGP_CASTEiJ_G0021551.1 mouse_genomes_project 15 100023024 100043294 + MGP_CASTEiJ_P0042229 1700031M16Rik protein_coding protein_coding MGP_CASTEiJ_T0042230.1 MGP_CASTEiJ_G0021551.1 mouse_genomes_project 15 100023043 100039799 + 1700031M16Rik protein_coding processed_transcript MGP_CASTEiJ_T0042231.1 MGP_CASTEiJ_G0021551.1 mouse_genomes_project 15 100023043 100042403 + 1700031M16Rik protein_coding processed_transcript MGP_CASTEiJ_T0042232.1 MGP_CASTEiJ_G0021551.1 mouse_genomes_project 15 100023043 100042403 + 1700031M16Rik protein_coding processed_transcript MGP_CASTEiJ_T0042233.1 MGP_CASTEiJ_G0021551.1 mouse_genomes_project 15 100023043 100043165 + MGP_CASTEiJ_P0042233 1700031M16Rik protein_coding protein_coding MGP_CASTEiJ_T0042234.1 MGP_CASTEiJ_G0021551.1 mouse_genomes_project 15 100023043 100043298 + MGP_CASTEiJ_P0042234 1700031M16Rik protein_coding protein_coding MGP_CASTEiJ_T0041374.1 MGP_CASTEiJ_G0021306.1 mouse_genomes_project 15 78825320 78832636 - MGP_CASTEiJ_P0041374 Sstr3 protein_coding protein_coding MGP_CASTEiJ_T0041960.1 MGP_CASTEiJ_G0021476.1 mouse_genomes_project 15 90186745 90202759 - MGP_CASTEiJ_P0041960 Mapk12 protein_coding protein_coding MGP_CASTEiJ_T0041831.1 MGP_CASTEiJ_G0021436.1 mouse_genomes_project 15 85354217 85358639 - MGP_CASTEiJ_P0041831 Ldoc1l protein_coding protein_coding MGP_CASTEiJ_T0040526.1 MGP_CASTEiJ_G0021041.1 mouse_genomes_project 15 32885294 32993271 - MGP_CASTEiJ_P0040526 Nipal2 protein_coding protein_coding MGP_CASTEiJ_T0040919.1 MGP_CASTEiJ_G0021178.1 mouse_genomes_project 15 73021243 73282698 - MGP_CASTEiJ_P0040919 protein_coding protein_coding MGP_CASTEiJ_T0040920.1 MGP_CASTEiJ_G0021178.1 mouse_genomes_project 15 73031610 73282698 - MGP_CASTEiJ_P0040920 protein_coding protein_coding MGP_CASTEiJ_T0012711.1 MGP_CASTEiJ_G0010874.1 mouse_genomes_project 15 64591771 64592083 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040562.1 MGP_CASTEiJ_G0021056.1 mouse_genomes_project 15 35175853 35199645 - MGP_CASTEiJ_P0040562 Ywhaz protein_coding protein_coding MGP_CASTEiJ_T0040563.1 MGP_CASTEiJ_G0021056.1 mouse_genomes_project 15 35176649 35199638 - MGP_CASTEiJ_P0040563 Ywhaz protein_coding protein_coding MGP_CASTEiJ_T0040564.1 MGP_CASTEiJ_G0021056.1 mouse_genomes_project 15 35176784 35198943 - MGP_CASTEiJ_P0040564 Ywhaz protein_coding protein_coding MGP_CASTEiJ_T0040565.1 MGP_CASTEiJ_G0021056.1 mouse_genomes_project 15 35180124 35198625 - Ywhaz protein_coding retained_intron MGP_CASTEiJ_T0040566.1 MGP_CASTEiJ_G0021056.1 mouse_genomes_project 15 35195817 35197520 - MGP_CASTEiJ_P0040566 Ywhaz protein_coding protein_coding MGP_CASTEiJ_T0040567.1 MGP_CASTEiJ_G0021056.1 mouse_genomes_project 15 35195949 35198316 - MGP_CASTEiJ_P0040567 Ywhaz protein_coding protein_coding MGP_CASTEiJ_T0040568.1 MGP_CASTEiJ_G0021056.1 mouse_genomes_project 15 35196004 35199654 - MGP_CASTEiJ_P0040568 Ywhaz protein_coding protein_coding MGP_CASTEiJ_T0012706.1 MGP_CASTEiJ_G0010869.1 mouse_genomes_project 15 53803882 53804864 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0042053.1 MGP_CASTEiJ_G0021499.1 mouse_genomes_project 15 90883675 90949239 - MGP_CASTEiJ_P0042053 Syt10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042054.1 MGP_CASTEiJ_G0021499.1 mouse_genomes_project 15 90890185 90949221 - MGP_CASTEiJ_P0042054 Syt10 protein_coding protein_coding MGP_CASTEiJ_T0011057.1 MGP_CASTEiJ_G0009245.1 mouse_genomes_project 15 61403415 61403588 + Gm27913 misc_RNA misc_RNA MGP_CASTEiJ_T0040969.1 MGP_CASTEiJ_G0021189.1 mouse_genomes_project 15 74653478 74655709 + MGP_CASTEiJ_P0040969 Psca protein_coding protein_coding MGP_CASTEiJ_T0011070.1 MGP_CASTEiJ_G0009258.1 mouse_genomes_project 15 105043696 105043799 + Gm27443 misc_RNA misc_RNA MGP_CASTEiJ_T0041337.1 MGP_CASTEiJ_G0021292.1 mouse_genomes_project 15 78123666 78139776 - MGP_CASTEiJ_P0041337 Foxred2 protein_coding protein_coding MGP_CASTEiJ_T0041338.1 MGP_CASTEiJ_G0021292.1 mouse_genomes_project 15 78123670 78129039 - Foxred2 protein_coding retained_intron MGP_CASTEiJ_T0041339.1 MGP_CASTEiJ_G0021292.1 mouse_genomes_project 15 78124162 78139729 - MGP_CASTEiJ_P0041339 Foxred2 protein_coding protein_coding MGP_CASTEiJ_T0041340.1 MGP_CASTEiJ_G0021292.1 mouse_genomes_project 15 78135875 78139737 - Foxred2 protein_coding retained_intron MGP_CASTEiJ_T0009779.1 MGP_CASTEiJ_G0007967.1 mouse_genomes_project 15 45121392 45121466 - Gm23562 miRNA miRNA MGP_CASTEiJ_T0100674.1 MGP_CASTEiJ_G0037587.1 mouse_genomes_project 15 37451045 37451176 + Gm24789 snoRNA snoRNA MGP_CASTEiJ_T0100677.1 MGP_CASTEiJ_G0037590.1 mouse_genomes_project 15 42997899 42998031 + Gm25093 snoRNA snoRNA MGP_CASTEiJ_T0042258.1 MGP_CASTEiJ_G0021561.1 mouse_genomes_project 15 100292916 100310379 - MGP_CASTEiJ_P0042258 Ddx23 protein_coding protein_coding MGP_CASTEiJ_T0042259.1 MGP_CASTEiJ_G0021561.1 mouse_genomes_project 15 100295758 100310374 - Ddx23 protein_coding retained_intron MGP_CASTEiJ_T0042260.1 MGP_CASTEiJ_G0021561.1 mouse_genomes_project 15 100295773 100310371 - Ddx23 protein_coding retained_intron MGP_CASTEiJ_T0042261.1 MGP_CASTEiJ_G0021561.1 mouse_genomes_project 15 100299752 100310374 - Ddx23 protein_coding retained_intron MGP_CASTEiJ_T0042262.1 MGP_CASTEiJ_G0021561.1 mouse_genomes_project 15 100304361 100310348 - MGP_CASTEiJ_P0042262 Ddx23 protein_coding protein_coding MGP_CASTEiJ_T0042263.1 MGP_CASTEiJ_G0021561.1 mouse_genomes_project 15 100305575 100310379 - Ddx23 protein_coding retained_intron MGP_CASTEiJ_T0016716.1 MGP_CASTEiJ_G0014610.1 mouse_genomes_project 15 65384990 65385478 + Gm20405 processed_transcript processed_transcript MGP_CASTEiJ_T0040902.1 MGP_CASTEiJ_G0021173.1 mouse_genomes_project 15 71517306 71772039 - MGP_CASTEiJ_P0040902 Col22a1 protein_coding protein_coding MGP_CASTEiJ_T0040903.1 MGP_CASTEiJ_G0021173.1 mouse_genomes_project 15 71521250 71742897 - MGP_CASTEiJ_P0040903 Col22a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040904.1 MGP_CASTEiJ_G0021173.1 mouse_genomes_project 15 71595153 71626082 - MGP_CASTEiJ_P0040904 Col22a1 protein_coding protein_coding MGP_CASTEiJ_T0040905.1 MGP_CASTEiJ_G0021173.1 mouse_genomes_project 15 71633259 71685115 - Col22a1 protein_coding processed_transcript MGP_CASTEiJ_T0040906.1 MGP_CASTEiJ_G0021173.1 mouse_genomes_project 15 71651410 71685140 - MGP_CASTEiJ_P0040906 Col22a1 protein_coding protein_coding MGP_CASTEiJ_T0041710.1 MGP_CASTEiJ_G0021392.1 mouse_genomes_project 15 82734983 82796827 + MGP_CASTEiJ_P0041710 Srebf2 protein_coding protein_coding MGP_CASTEiJ_T0040683.1 MGP_CASTEiJ_G0021097.1 mouse_genomes_project 15 50957184 50986220 - MGP_CASTEiJ_P0040683 Rad21 protein_coding protein_coding MGP_CASTEiJ_T0012721.1 MGP_CASTEiJ_G0010884.1 mouse_genomes_project 15 80063258 80076636 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101539.1 MGP_CASTEiJ_G0038425.1 mouse_genomes_project 15 58610312 58616442 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101540.1 MGP_CASTEiJ_G0038425.1 mouse_genomes_project 15 58615281 58616359 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0041310.1 MGP_CASTEiJ_G0021284.1 mouse_genomes_project 15 77669926 77686174 + Apol10a protein_coding processed_transcript MGP_CASTEiJ_T0041313.1 MGP_CASTEiJ_G0021284.1 mouse_genomes_project 15 77669926 77687126 + MGP_CASTEiJ_P0041313 Apol10a protein_coding protein_coding MGP_CASTEiJ_T0041315.1 MGP_CASTEiJ_G0021284.1 mouse_genomes_project 15 77669934 77686141 + MGP_CASTEiJ_P0041315 Apol10a protein_coding protein_coding MGP_CASTEiJ_T0101536.1 MGP_CASTEiJ_G0038423.1 mouse_genomes_project 15 2205266 2205660 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0011066.1 MGP_CASTEiJ_G0009254.1 mouse_genomes_project 15 99514164 99514476 + Gm22202 misc_RNA misc_RNA MGP_CASTEiJ_T0042193.1 MGP_CASTEiJ_G0021539.1 mouse_genomes_project 15 99545865 99553122 + MGP_CASTEiJ_P0042193 Tmem106c protein_coding protein_coding MGP_CASTEiJ_T0042070.1 MGP_CASTEiJ_G0021505.1 mouse_genomes_project 15 92440012 92773538 - MGP_CASTEiJ_P0042070 Slc2a13 protein_coding protein_coding MGP_CASTEiJ_T0042071.1 MGP_CASTEiJ_G0021505.1 mouse_genomes_project 15 92581426 92604425 - Slc2a13 protein_coding processed_transcript MGP_CASTEiJ_T0042072.1 MGP_CASTEiJ_G0021505.1 mouse_genomes_project 15 92740301 92773471 - Slc2a13 protein_coding processed_transcript MGP_CASTEiJ_T0040273.1 MGP_CASTEiJ_G0020966.1 mouse_genomes_project 15 5297158 5461684 - MGP_CASTEiJ_P0040273 Nipbl protein_coding protein_coding MGP_CASTEiJ_T0006635.1 MGP_CASTEiJ_G0005485.1 mouse_genomes_project 15 103217899 103221293 + 6030408B16Rik lincRNA lincRNA MGP_CASTEiJ_T0006636.1 MGP_CASTEiJ_G0005485.1 mouse_genomes_project 15 103217919 103222098 + 6030408B16Rik lincRNA lincRNA MGP_CASTEiJ_T0041014.1 MGP_CASTEiJ_G0021208.1 mouse_genomes_project 15 75194549 75200171 + MGP_CASTEiJ_P0041014 BC025446 protein_coding protein_coding MGP_CASTEiJ_T0041015.1 MGP_CASTEiJ_G0021208.1 mouse_genomes_project 15 75194769 75200877 + MGP_CASTEiJ_P0041015 BC025446 protein_coding protein_coding MGP_CASTEiJ_T0012724.1 MGP_CASTEiJ_G0010887.1 mouse_genomes_project 15 82448546 82477791 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0042332.1 MGP_CASTEiJ_G0021587.1 mouse_genomes_project 15 101152190 101193134 - MGP_CASTEiJ_P0042332 Nckap5l protein_coding protein_coding MGP_CASTEiJ_T0042333.1 MGP_CASTEiJ_G0021587.1 mouse_genomes_project 15 101153767 101156393 - MGP_CASTEiJ_P0042333 Nckap5l protein_coding protein_coding MGP_CASTEiJ_T0042334.1 MGP_CASTEiJ_G0021587.1 mouse_genomes_project 15 101154172 101156389 - Nckap5l protein_coding processed_transcript MGP_CASTEiJ_T0042335.1 MGP_CASTEiJ_G0021587.1 mouse_genomes_project 15 101161275 101193098 - MGP_CASTEiJ_P0042335 Nckap5l protein_coding protein_coding MGP_CASTEiJ_T0041212.1 MGP_CASTEiJ_G0021254.1 mouse_genomes_project 15 76656429 76662348 - MGP_CASTEiJ_P0041212 Scrt1 protein_coding protein_coding MGP_CASTEiJ_T0041213.1 MGP_CASTEiJ_G0021254.1 mouse_genomes_project 15 76656439 76662121 - MGP_CASTEiJ_P0041213 Scrt1 protein_coding protein_coding MGP_CASTEiJ_T0041416.1 MGP_CASTEiJ_G0021321.1 mouse_genomes_project 15 79384627 79394441 - MGP_CASTEiJ_P0041416 Ankrd54 protein_coding protein_coding MGP_CASTEiJ_T0041417.1 MGP_CASTEiJ_G0021321.1 mouse_genomes_project 15 79384637 79394441 - Ankrd54 protein_coding retained_intron MGP_CASTEiJ_T0041418.1 MGP_CASTEiJ_G0021321.1 mouse_genomes_project 15 79385107 79386968 - MGP_CASTEiJ_P0041418 Ankrd54 protein_coding protein_coding MGP_CASTEiJ_T0041419.1 MGP_CASTEiJ_G0021321.1 mouse_genomes_project 15 79385301 79386899 - MGP_CASTEiJ_P0041419 Ankrd54 protein_coding protein_coding MGP_CASTEiJ_T0041420.1 MGP_CASTEiJ_G0021321.1 mouse_genomes_project 15 79386940 79394438 - MGP_CASTEiJ_P0041420 Ankrd54 protein_coding protein_coding MGP_CASTEiJ_T0041421.1 MGP_CASTEiJ_G0021321.1 mouse_genomes_project 15 79386969 79394392 - MGP_CASTEiJ_P0041421 Ankrd54 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041422.1 MGP_CASTEiJ_G0021321.1 mouse_genomes_project 15 79391182 79394449 - Ankrd54 protein_coding retained_intron MGP_CASTEiJ_T0042067.1 MGP_CASTEiJ_G0021504.1 mouse_genomes_project 15 92365108 92433191 + MGP_CASTEiJ_P0042067 CN725425 protein_coding protein_coding MGP_CASTEiJ_T0042068.1 MGP_CASTEiJ_G0021504.1 mouse_genomes_project 15 92365190 92433115 + MGP_CASTEiJ_P0042068 CN725425 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042069.1 MGP_CASTEiJ_G0021504.1 mouse_genomes_project 15 92400424 92433182 + MGP_CASTEiJ_P0042069 CN725425 protein_coding protein_coding MGP_CASTEiJ_T0040646.1 MGP_CASTEiJ_G0021085.1 mouse_genomes_project 15 42488905 42492250 - MGP_CASTEiJ_P0040646 Tmem74 protein_coding protein_coding MGP_CASTEiJ_T0042342.1 MGP_CASTEiJ_G0021593.1 mouse_genomes_project 15 101366141 101402790 - MGP_CASTEiJ_P0042342 Racgap1 protein_coding protein_coding MGP_CASTEiJ_T0042343.1 MGP_CASTEiJ_G0021593.1 mouse_genomes_project 15 101366142 101402803 - MGP_CASTEiJ_P0042343 Racgap1 protein_coding protein_coding MGP_CASTEiJ_T0042344.1 MGP_CASTEiJ_G0021593.1 mouse_genomes_project 15 101373843 101379328 - Racgap1 protein_coding retained_intron MGP_CASTEiJ_T0042345.1 MGP_CASTEiJ_G0021593.1 mouse_genomes_project 15 101374123 101402736 - Racgap1 protein_coding processed_transcript MGP_CASTEiJ_T0042346.1 MGP_CASTEiJ_G0021593.1 mouse_genomes_project 15 101375027 101402729 - Racgap1 protein_coding retained_intron MGP_CASTEiJ_T0042347.1 MGP_CASTEiJ_G0021593.1 mouse_genomes_project 15 101375106 101388734 - MGP_CASTEiJ_P0042347 Racgap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042348.1 MGP_CASTEiJ_G0021593.1 mouse_genomes_project 15 101375152 101384805 - Racgap1 protein_coding retained_intron MGP_CASTEiJ_T0042349.1 MGP_CASTEiJ_G0021593.1 mouse_genomes_project 15 101378666 101402799 - MGP_CASTEiJ_P0042349 Racgap1 protein_coding protein_coding MGP_CASTEiJ_T0042350.1 MGP_CASTEiJ_G0021593.1 mouse_genomes_project 15 101378682 101381314 - Racgap1 protein_coding retained_intron MGP_CASTEiJ_T0042351.1 MGP_CASTEiJ_G0021593.1 mouse_genomes_project 15 101380837 101402716 - MGP_CASTEiJ_P0042351 Racgap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042352.1 MGP_CASTEiJ_G0021593.1 mouse_genomes_project 15 101382691 101402759 - MGP_CASTEiJ_P0042352 Racgap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042353.1 MGP_CASTEiJ_G0021593.1 mouse_genomes_project 15 101383998 101402729 - Racgap1 protein_coding retained_intron MGP_CASTEiJ_T0042354.1 MGP_CASTEiJ_G0021593.1 mouse_genomes_project 15 101384209 101402759 - MGP_CASTEiJ_P0042354 Racgap1 protein_coding protein_coding MGP_CASTEiJ_T0042355.1 MGP_CASTEiJ_G0021593.1 mouse_genomes_project 15 101388715 101402790 - MGP_CASTEiJ_P0042355 Racgap1 protein_coding protein_coding MGP_CASTEiJ_T0042336.1 MGP_CASTEiJ_G0021588.1 mouse_genomes_project 15 101206926 101211596 - MGP_CASTEiJ_P0042336 Bcdin3d protein_coding protein_coding MGP_CASTEiJ_T0000909.1 MGP_CASTEiJ_G0000848.1 mouse_genomes_project 15 105508749 105509086 + TEC TEC MGP_CASTEiJ_T0040352.1 MGP_CASTEiJ_G0020985.1 mouse_genomes_project 15 8082328 8111724 + MGP_CASTEiJ_P0040352 C1qtnf3 protein_coding protein_coding MGP_CASTEiJ_T0040353.1 MGP_CASTEiJ_G0020985.1 mouse_genomes_project 15 8082353 8111280 + MGP_CASTEiJ_P0040353 C1qtnf3 protein_coding protein_coding MGP_CASTEiJ_T0040893.1 MGP_CASTEiJ_G0021170.1 mouse_genomes_project 15 67639476 67866514 - MGP_CASTEiJ_P0040893 Zfat protein_coding unknown_likely_coding MGP_CASTEiJ_T0040894.1 MGP_CASTEiJ_G0021170.1 mouse_genomes_project 15 67678201 67866488 - MGP_CASTEiJ_P0040894 Zfat protein_coding protein_coding MGP_CASTEiJ_T0040895.1 MGP_CASTEiJ_G0021170.1 mouse_genomes_project 15 67678757 67866419 - MGP_CASTEiJ_P0040895 Zfat protein_coding protein_coding MGP_CASTEiJ_T0040896.1 MGP_CASTEiJ_G0021170.1 mouse_genomes_project 15 67678758 67866470 - MGP_CASTEiJ_P0040896 Zfat protein_coding protein_coding MGP_CASTEiJ_T0040897.1 MGP_CASTEiJ_G0021170.1 mouse_genomes_project 15 67782693 67866479 - MGP_CASTEiJ_P0040897 Zfat protein_coding protein_coding MGP_CASTEiJ_T0040898.1 MGP_CASTEiJ_G0021170.1 mouse_genomes_project 15 67826579 67866481 - Zfat protein_coding retained_intron MGP_CASTEiJ_T0040833.1 MGP_CASTEiJ_G0021155.1 mouse_genomes_project 15 64248303 64478494 - MGP_CASTEiJ_P0040833 Adcy8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040834.1 MGP_CASTEiJ_G0021155.1 mouse_genomes_project 15 64248308 64479502 - MGP_CASTEiJ_P0040834 Adcy8 protein_coding protein_coding MGP_CASTEiJ_T0040836.1 MGP_CASTEiJ_G0021157.1 mouse_genomes_project 15 64551567 64591520 - MGP_CASTEiJ_P0040836 Gm21961 protein_coding protein_coding MGP_CASTEiJ_T0041231.1 MGP_CASTEiJ_G0021260.1 mouse_genomes_project 15 76765194 76769134 - MGP_CASTEiJ_P0041231 Tonsl protein_coding protein_coding MGP_CASTEiJ_T0041232.1 MGP_CASTEiJ_G0021260.1 mouse_genomes_project 15 76769108 76772399 - MGP_CASTEiJ_P0041232 Tonsl protein_coding protein_coding MGP_CASTEiJ_T0041233.1 MGP_CASTEiJ_G0021260.1 mouse_genomes_project 15 76769345 76783239 - MGP_CASTEiJ_P0041233 Tonsl protein_coding protein_coding MGP_CASTEiJ_T0041234.1 MGP_CASTEiJ_G0021260.1 mouse_genomes_project 15 76769346 76772480 - Tonsl protein_coding retained_intron MGP_CASTEiJ_T0041235.1 MGP_CASTEiJ_G0021260.1 mouse_genomes_project 15 76775870 76776774 - MGP_CASTEiJ_P0041235 Tonsl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041236.1 MGP_CASTEiJ_G0021260.1 mouse_genomes_project 15 76775903 76783210 - MGP_CASTEiJ_P0041236 Tonsl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041237.1 MGP_CASTEiJ_G0021260.1 mouse_genomes_project 15 76780468 76781560 - Tonsl protein_coding retained_intron MGP_CASTEiJ_T0041238.1 MGP_CASTEiJ_G0021260.1 mouse_genomes_project 15 76781837 76782919 - Tonsl protein_coding retained_intron MGP_CASTEiJ_T0041239.1 MGP_CASTEiJ_G0021260.1 mouse_genomes_project 15 76782139 76783121 - MGP_CASTEiJ_P0041239 Tonsl protein_coding protein_coding MGP_CASTEiJ_T0040868.1 MGP_CASTEiJ_G0021166.1 mouse_genomes_project 15 66329606 66387100 - MGP_CASTEiJ_P0040868 Sla protein_coding protein_coding MGP_CASTEiJ_T0040869.1 MGP_CASTEiJ_G0021166.1 mouse_genomes_project 15 66329651 66365282 - MGP_CASTEiJ_P0040869 Sla protein_coding protein_coding MGP_CASTEiJ_T0040870.1 MGP_CASTEiJ_G0021166.1 mouse_genomes_project 15 66330869 66354353 - MGP_CASTEiJ_P0040870 Sla protein_coding protein_coding MGP_CASTEiJ_T0040871.1 MGP_CASTEiJ_G0021166.1 mouse_genomes_project 15 66331334 66387283 - MGP_CASTEiJ_P0040871 Sla protein_coding protein_coding MGP_CASTEiJ_T0040872.1 MGP_CASTEiJ_G0021166.1 mouse_genomes_project 15 66334513 66356509 - Sla protein_coding retained_intron MGP_CASTEiJ_T0040860.1 MGP_CASTEiJ_G0021164.1 mouse_genomes_project 15 66120125 66189252 + MGP_CASTEiJ_P0040860 Phf20l1 protein_coding protein_coding MGP_CASTEiJ_T0041093.1 MGP_CASTEiJ_G0021232.1 mouse_genomes_project 15 76181274 76192459 - MGP_CASTEiJ_P0041093 Puf60 protein_coding protein_coding MGP_CASTEiJ_T0041094.1 MGP_CASTEiJ_G0021232.1 mouse_genomes_project 15 76181274 76192459 - MGP_CASTEiJ_P0041094 Puf60 protein_coding protein_coding MGP_CASTEiJ_T0040337.1 MGP_CASTEiJ_G0020981.1 mouse_genomes_project 15 7584864 7595831 - MGP_CASTEiJ_P0040337 Brix1 protein_coding protein_coding MGP_CASTEiJ_T0040338.1 MGP_CASTEiJ_G0020981.1 mouse_genomes_project 15 7588823 7595276 - MGP_CASTEiJ_P0040338 Brix1 protein_coding protein_coding MGP_CASTEiJ_T0040339.1 MGP_CASTEiJ_G0020981.1 mouse_genomes_project 15 7589226 7595793 - MGP_CASTEiJ_P0040339 Brix1 protein_coding protein_coding MGP_CASTEiJ_T0040340.1 MGP_CASTEiJ_G0020981.1 mouse_genomes_project 15 7589674 7595771 - MGP_CASTEiJ_P0040340 Brix1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040576.1 MGP_CASTEiJ_G0021060.1 mouse_genomes_project 15 35789885 36027530 - MGP_CASTEiJ_P0040576 Ncald protein_coding protein_coding MGP_CASTEiJ_T0040577.1 MGP_CASTEiJ_G0021060.1 mouse_genomes_project 15 35789885 36247408 - MGP_CASTEiJ_P0040577 Ncald protein_coding protein_coding MGP_CASTEiJ_T0040578.1 MGP_CASTEiJ_G0021060.1 mouse_genomes_project 15 35789928 35891301 - MGP_CASTEiJ_P0040578 Ncald protein_coding protein_coding MGP_CASTEiJ_T0040579.1 MGP_CASTEiJ_G0021060.1 mouse_genomes_project 15 35789977 35891290 - MGP_CASTEiJ_P0040579 Ncald protein_coding protein_coding MGP_CASTEiJ_T0040580.1 MGP_CASTEiJ_G0021060.1 mouse_genomes_project 15 35792337 35890482 - MGP_CASTEiJ_P0040580 Ncald protein_coding protein_coding MGP_CASTEiJ_T0040581.1 MGP_CASTEiJ_G0021060.1 mouse_genomes_project 15 35792600 36181969 - MGP_CASTEiJ_P0040581 Ncald protein_coding protein_coding MGP_CASTEiJ_T0040582.1 MGP_CASTEiJ_G0021060.1 mouse_genomes_project 15 35795816 36246975 - MGP_CASTEiJ_P0040582 Ncald protein_coding protein_coding MGP_CASTEiJ_T0040583.1 MGP_CASTEiJ_G0021060.1 mouse_genomes_project 15 35802394 35891273 - Ncald protein_coding processed_transcript MGP_CASTEiJ_T0040584.1 MGP_CASTEiJ_G0021060.1 mouse_genomes_project 15 35823573 36247544 - MGP_CASTEiJ_P0040584 Ncald protein_coding protein_coding MGP_CASTEiJ_T0040586.1 MGP_CASTEiJ_G0021060.1 mouse_genomes_project 15 35860838 36181666 - Ncald protein_coding processed_transcript MGP_CASTEiJ_T0040587.1 MGP_CASTEiJ_G0021060.1 mouse_genomes_project 15 36061446 36181969 - Ncald protein_coding processed_transcript MGP_CASTEiJ_T0040588.1 MGP_CASTEiJ_G0021060.1 mouse_genomes_project 15 36062812 36247214 - Ncald protein_coding processed_transcript MGP_CASTEiJ_T0041908.1 MGP_CASTEiJ_G0021465.1 mouse_genomes_project 15 89857380 89868288 - Alg12 protein_coding retained_intron MGP_CASTEiJ_T0041909.1 MGP_CASTEiJ_G0021465.1 mouse_genomes_project 15 89857380 89871434 - MGP_CASTEiJ_P0041909 Alg12 protein_coding protein_coding MGP_CASTEiJ_T0041910.1 MGP_CASTEiJ_G0021465.1 mouse_genomes_project 15 89857381 89871401 - MGP_CASTEiJ_P0041910 Alg12 protein_coding protein_coding MGP_CASTEiJ_T0041911.1 MGP_CASTEiJ_G0021465.1 mouse_genomes_project 15 89866724 89871208 - MGP_CASTEiJ_P0041911 Alg12 protein_coding protein_coding MGP_CASTEiJ_T0012702.1 MGP_CASTEiJ_G0010865.1 mouse_genomes_project 15 51247629 51248167 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003484.1 MGP_CASTEiJ_G0003167.1 mouse_genomes_project 15 54528327 54531225 - 1700040F17Rik antisense antisense MGP_CASTEiJ_T0041080.1 MGP_CASTEiJ_G0021229.1 mouse_genomes_project 15 76114137 76127381 - MGP_CASTEiJ_P0041080 Fam83h protein_coding protein_coding MGP_CASTEiJ_T0041081.1 MGP_CASTEiJ_G0021229.1 mouse_genomes_project 15 76114137 76122552 - MGP_CASTEiJ_P0041081 Fam83h protein_coding protein_coding MGP_CASTEiJ_T0040363.1 MGP_CASTEiJ_G0020992.1 mouse_genomes_project 15 9188096 9202814 - MGP_CASTEiJ_P0040363 Sub1 protein_coding protein_coding MGP_CASTEiJ_T0040364.1 MGP_CASTEiJ_G0020992.1 mouse_genomes_project 15 9190797 9203739 - MGP_CASTEiJ_P0040364 Sub1 protein_coding protein_coding MGP_CASTEiJ_T0040365.1 MGP_CASTEiJ_G0020992.1 mouse_genomes_project 15 9192898 9202768 - Sub1 protein_coding retained_intron MGP_CASTEiJ_T0040366.1 MGP_CASTEiJ_G0020992.1 mouse_genomes_project 15 9193218 9202506 - Sub1 protein_coding processed_transcript MGP_CASTEiJ_T0041564.1 MGP_CASTEiJ_G0021358.1 mouse_genomes_project 15 80707511 80832993 + MGP_CASTEiJ_P0041564 Cacna1i protein_coding protein_coding MGP_CASTEiJ_T0041565.1 MGP_CASTEiJ_G0021358.1 mouse_genomes_project 15 80707807 80830460 + MGP_CASTEiJ_P0041565 Cacna1i protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041566.1 MGP_CASTEiJ_G0021358.1 mouse_genomes_project 15 80709722 80833003 + MGP_CASTEiJ_P0041566 Cacna1i protein_coding unknown_likely_coding MGP_CASTEiJ_T0041567.1 MGP_CASTEiJ_G0021358.1 mouse_genomes_project 15 80823997 80825587 + MGP_CASTEiJ_P0041567 Cacna1i protein_coding protein_coding MGP_CASTEiJ_T0041568.1 MGP_CASTEiJ_G0021358.1 mouse_genomes_project 15 80823997 80825587 + MGP_CASTEiJ_P0041568 Cacna1i protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041569.1 MGP_CASTEiJ_G0021358.1 mouse_genomes_project 15 80823997 80825587 + MGP_CASTEiJ_P0041569 Cacna1i protein_coding protein_coding MGP_CASTEiJ_T0041570.1 MGP_CASTEiJ_G0021358.1 mouse_genomes_project 15 80823997 80828529 + MGP_CASTEiJ_P0041570 Cacna1i protein_coding protein_coding MGP_CASTEiJ_T0042379.1 MGP_CASTEiJ_G0021604.1 mouse_genomes_project 15 102041411 102076978 + MGP_CASTEiJ_P0042379 Atf1 protein_coding protein_coding MGP_CASTEiJ_T0042380.1 MGP_CASTEiJ_G0021604.1 mouse_genomes_project 15 102041425 102071505 + MGP_CASTEiJ_P0042380 Atf1 protein_coding protein_coding MGP_CASTEiJ_T0042381.1 MGP_CASTEiJ_G0021604.1 mouse_genomes_project 15 102042279 102048218 + MGP_CASTEiJ_P0042381 Atf1 protein_coding protein_coding MGP_CASTEiJ_T0042382.1 MGP_CASTEiJ_G0021604.1 mouse_genomes_project 15 102047562 102069120 + MGP_CASTEiJ_P0042382 Atf1 protein_coding protein_coding MGP_CASTEiJ_T0042383.1 MGP_CASTEiJ_G0021604.1 mouse_genomes_project 15 102047574 102048417 + Atf1 protein_coding retained_intron MGP_CASTEiJ_T0042384.1 MGP_CASTEiJ_G0021604.1 mouse_genomes_project 15 102047601 102071441 + MGP_CASTEiJ_P0042384 Atf1 protein_coding protein_coding MGP_CASTEiJ_T0042385.1 MGP_CASTEiJ_G0021604.1 mouse_genomes_project 15 102048136 102079169 + MGP_CASTEiJ_P0042385 Atf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042386.1 MGP_CASTEiJ_G0021604.1 mouse_genomes_project 15 102048154 102079212 + Atf1 protein_coding processed_transcript MGP_CASTEiJ_T0042387.1 MGP_CASTEiJ_G0021604.1 mouse_genomes_project 15 102071146 102076991 + MGP_CASTEiJ_P0042387 Atf1 protein_coding protein_coding MGP_CASTEiJ_T0041439.1 MGP_CASTEiJ_G0021326.1 mouse_genomes_project 15 79493609 79503133 - MGP_CASTEiJ_P0041439 Sox10 protein_coding protein_coding MGP_CASTEiJ_T0041440.1 MGP_CASTEiJ_G0021326.1 mouse_genomes_project 15 79493621 79502473 - MGP_CASTEiJ_P0041440 Sox10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006577.1 MGP_CASTEiJ_G0005447.1 mouse_genomes_project 15 36727790 36731108 - lincRNA lincRNA MGP_CASTEiJ_T0042225.1 MGP_CASTEiJ_G0021549.1 mouse_genomes_project 15 99960961 99961879 - MGP_CASTEiJ_P0042225 Olfr284 protein_coding protein_coding MGP_CASTEiJ_T0042226.1 MGP_CASTEiJ_G0021549.1 mouse_genomes_project 15 99960961 99961927 - MGP_CASTEiJ_P0042226 Olfr284 protein_coding protein_coding MGP_CASTEiJ_T0016727.1 MGP_CASTEiJ_G0014619.1 mouse_genomes_project 15 81671564 81673567 + 4930483J18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016728.1 MGP_CASTEiJ_G0014619.1 mouse_genomes_project 15 81671643 81673560 + 4930483J18Rik processed_transcript processed_transcript MGP_CASTEiJ_T0006632.1 MGP_CASTEiJ_G0005482.1 mouse_genomes_project 15 102477939 102479846 + lincRNA lincRNA MGP_CASTEiJ_T0042431.1 MGP_CASTEiJ_G0021620.1 mouse_genomes_project 15 102557250 102570764 - MGP_CASTEiJ_P0042431 Cela1 protein_coding protein_coding MGP_CASTEiJ_T0040569.1 MGP_CASTEiJ_G0021057.1 mouse_genomes_project 15 35275605 35285592 - MGP_CASTEiJ_P0040569 Gm10384 protein_coding protein_coding MGP_CASTEiJ_T0042616.1 MGP_CASTEiJ_G0021681.1 mouse_genomes_project 15 104729990 104736621 - MGP_CASTEiJ_P0042616 protein_coding protein_coding MGP_CASTEiJ_T0016717.1 MGP_CASTEiJ_G0014611.1 mouse_genomes_project 15 66534805 66577338 + Gm2895 processed_transcript processed_transcript MGP_CASTEiJ_T0042066.1 MGP_CASTEiJ_G0021503.1 mouse_genomes_project 15 92305544 92357682 - MGP_CASTEiJ_P0042066 Abcd2 protein_coding protein_coding MGP_CASTEiJ_T0041601.1 MGP_CASTEiJ_G0021366.1 mouse_genomes_project 15 81489785 81671548 - MGP_CASTEiJ_P0041601 Mkl1 protein_coding protein_coding MGP_CASTEiJ_T0041602.1 MGP_CASTEiJ_G0021366.1 mouse_genomes_project 15 81489785 81671524 - MGP_CASTEiJ_P0041602 Mkl1 protein_coding protein_coding MGP_CASTEiJ_T0041603.1 MGP_CASTEiJ_G0021366.1 mouse_genomes_project 15 81489795 81586728 - MGP_CASTEiJ_P0041603 Mkl1 protein_coding protein_coding MGP_CASTEiJ_T0041604.1 MGP_CASTEiJ_G0021366.1 mouse_genomes_project 15 81489795 81671514 - MGP_CASTEiJ_P0041604 Mkl1 protein_coding protein_coding MGP_CASTEiJ_T0041605.1 MGP_CASTEiJ_G0021366.1 mouse_genomes_project 15 81493391 81526082 - MGP_CASTEiJ_P0041605 Mkl1 protein_coding protein_coding MGP_CASTEiJ_T0041606.1 MGP_CASTEiJ_G0021366.1 mouse_genomes_project 15 81494300 81495726 - Mkl1 protein_coding retained_intron MGP_CASTEiJ_T0041607.1 MGP_CASTEiJ_G0021366.1 mouse_genomes_project 15 81497774 81498841 - Mkl1 protein_coding retained_intron MGP_CASTEiJ_T0041608.1 MGP_CASTEiJ_G0021366.1 mouse_genomes_project 15 81500027 81501444 - Mkl1 protein_coding retained_intron MGP_CASTEiJ_T0041609.1 MGP_CASTEiJ_G0021366.1 mouse_genomes_project 15 81503667 81671519 - Mkl1 protein_coding retained_intron MGP_CASTEiJ_T0041610.1 MGP_CASTEiJ_G0021366.1 mouse_genomes_project 15 81525668 81671313 - Mkl1 protein_coding retained_intron MGP_CASTEiJ_T0042586.1 MGP_CASTEiJ_G0021677.1 mouse_genomes_project 15 104585808 104591285 + MGP_CASTEiJ_P0042586 Tarbp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042587.1 MGP_CASTEiJ_G0021677.1 mouse_genomes_project 15 104585860 104588591 + Tarbp2 protein_coding retained_intron MGP_CASTEiJ_T0042588.1 MGP_CASTEiJ_G0021677.1 mouse_genomes_project 15 104585971 104591213 + MGP_CASTEiJ_P0042588 Tarbp2 protein_coding protein_coding MGP_CASTEiJ_T0042589.1 MGP_CASTEiJ_G0021677.1 mouse_genomes_project 15 104586041 104591287 + Tarbp2 protein_coding retained_intron MGP_CASTEiJ_T0042590.1 MGP_CASTEiJ_G0021677.1 mouse_genomes_project 15 104586069 104589360 + MGP_CASTEiJ_P0042590 Tarbp2 protein_coding protein_coding MGP_CASTEiJ_T0042591.1 MGP_CASTEiJ_G0021677.1 mouse_genomes_project 15 104586073 104591287 + MGP_CASTEiJ_P0042591 Tarbp2 protein_coding protein_coding MGP_CASTEiJ_T0042592.1 MGP_CASTEiJ_G0021677.1 mouse_genomes_project 15 104586112 104587335 + Tarbp2 protein_coding retained_intron MGP_CASTEiJ_T0042593.1 MGP_CASTEiJ_G0021677.1 mouse_genomes_project 15 104586161 104591215 + MGP_CASTEiJ_P0042593 Tarbp2 protein_coding protein_coding MGP_CASTEiJ_T0042594.1 MGP_CASTEiJ_G0021677.1 mouse_genomes_project 15 104586171 104590830 + Tarbp2 protein_coding processed_transcript MGP_CASTEiJ_T0042595.1 MGP_CASTEiJ_G0021677.1 mouse_genomes_project 15 104586182 104589950 + Tarbp2 protein_coding retained_intron MGP_CASTEiJ_T0042596.1 MGP_CASTEiJ_G0021677.1 mouse_genomes_project 15 104586340 104590162 + MGP_CASTEiJ_P0042596 Tarbp2 protein_coding protein_coding MGP_CASTEiJ_T0042597.1 MGP_CASTEiJ_G0021677.1 mouse_genomes_project 15 104586413 104589691 + MGP_CASTEiJ_P0042597 Tarbp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042598.1 MGP_CASTEiJ_G0021677.1 mouse_genomes_project 15 104586416 104590513 + MGP_CASTEiJ_P0042598 Tarbp2 protein_coding protein_coding MGP_CASTEiJ_T0042599.1 MGP_CASTEiJ_G0021677.1 mouse_genomes_project 15 104588650 104590051 + Tarbp2 protein_coding retained_intron MGP_CASTEiJ_T0040661.1 MGP_CASTEiJ_G0021092.1 mouse_genomes_project 15 43727594 43737596 - MGP_CASTEiJ_P0040661 Kcnv1 protein_coding protein_coding MGP_CASTEiJ_T0041476.1 MGP_CASTEiJ_G0021333.1 mouse_genomes_project 15 79782053 79806245 - MGP_CASTEiJ_P0041476 Csnk1e protein_coding unknown_likely_coding MGP_CASTEiJ_T0041477.1 MGP_CASTEiJ_G0021333.1 mouse_genomes_project 15 79783353 79785524 - Csnk1e protein_coding retained_intron MGP_CASTEiJ_T0041478.1 MGP_CASTEiJ_G0021333.1 mouse_genomes_project 15 79786695 79806471 - MGP_CASTEiJ_P0041478 Csnk1e protein_coding protein_coding MGP_CASTEiJ_T0041479.1 MGP_CASTEiJ_G0021333.1 mouse_genomes_project 15 79787857 79788513 - Csnk1e protein_coding retained_intron MGP_CASTEiJ_T0041480.1 MGP_CASTEiJ_G0021333.1 mouse_genomes_project 15 79788379 79789773 - Csnk1e protein_coding retained_intron MGP_CASTEiJ_T0041481.1 MGP_CASTEiJ_G0021333.1 mouse_genomes_project 15 79788951 79790658 - Csnk1e protein_coding retained_intron MGP_CASTEiJ_T0041482.1 MGP_CASTEiJ_G0021333.1 mouse_genomes_project 15 79789069 79794080 - Csnk1e protein_coding retained_intron MGP_CASTEiJ_T0041483.1 MGP_CASTEiJ_G0021333.1 mouse_genomes_project 15 79790612 79803682 - MGP_CASTEiJ_P0041483 Csnk1e protein_coding protein_coding MGP_CASTEiJ_T0041484.1 MGP_CASTEiJ_G0021333.1 mouse_genomes_project 15 79790681 79806471 - MGP_CASTEiJ_P0041484 Csnk1e protein_coding protein_coding MGP_CASTEiJ_T0041485.1 MGP_CASTEiJ_G0021333.1 mouse_genomes_project 15 79794264 79808582 - MGP_CASTEiJ_P0041485 Csnk1e protein_coding protein_coding MGP_CASTEiJ_T0042475.1 MGP_CASTEiJ_G0021629.1 mouse_genomes_project 15 103191768 103199703 + MGP_CASTEiJ_P0042475 Nr4a1 protein_coding protein_coding MGP_CASTEiJ_T0011051.1 MGP_CASTEiJ_G0009239.1 mouse_genomes_project 15 7153121 7153409 + Gm26350 misc_RNA misc_RNA MGP_CASTEiJ_T0012696.1 MGP_CASTEiJ_G0010859.1 mouse_genomes_project 15 37595746 37596677 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0042112.1 MGP_CASTEiJ_G0021515.1 mouse_genomes_project 15 95609931 95740118 - MGP_CASTEiJ_P0042112 Adamts20 protein_coding protein_coding MGP_CASTEiJ_T0042113.1 MGP_CASTEiJ_G0021515.1 mouse_genomes_project 15 95657831 95740118 - MGP_CASTEiJ_P0042113 Adamts20 protein_coding protein_coding MGP_CASTEiJ_T0042114.1 MGP_CASTEiJ_G0021515.1 mouse_genomes_project 15 95692603 95740210 - Adamts20 protein_coding retained_intron MGP_CASTEiJ_T0042115.1 MGP_CASTEiJ_G0021515.1 mouse_genomes_project 15 95730727 95806820 - Adamts20 protein_coding processed_transcript MGP_CASTEiJ_T0006584.1 MGP_CASTEiJ_G0005454.1 mouse_genomes_project 15 42054550 42100497 - Gm10373 lincRNA lincRNA MGP_CASTEiJ_T0040874.1 MGP_CASTEiJ_G0021167.1 mouse_genomes_project 15 66451921 66484243 + MGP_CASTEiJ_P0040874 Wisp1 protein_coding protein_coding MGP_CASTEiJ_T0040875.1 MGP_CASTEiJ_G0021167.1 mouse_genomes_project 15 66451988 66481018 + MGP_CASTEiJ_P0040875 Wisp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040876.1 MGP_CASTEiJ_G0021167.1 mouse_genomes_project 15 66452109 66480404 + MGP_CASTEiJ_P0040876 Wisp1 protein_coding protein_coding MGP_CASTEiJ_T0040877.1 MGP_CASTEiJ_G0021167.1 mouse_genomes_project 15 66470337 66480184 + Wisp1 protein_coding processed_transcript MGP_CASTEiJ_T0041967.1 MGP_CASTEiJ_G0021479.1 mouse_genomes_project 15 90247146 90261420 - MGP_CASTEiJ_P0041967 Dennd6b protein_coding protein_coding MGP_CASTEiJ_T0006602.1 MGP_CASTEiJ_G0005461.1 mouse_genomes_project 15 67949648 67975951 - Gm20732 lincRNA lincRNA MGP_CASTEiJ_T0040741.1 MGP_CASTEiJ_G0021120.1 mouse_genomes_project 15 57049354 57071267 - MGP_CASTEiJ_P0040741 Derl1 protein_coding protein_coding MGP_CASTEiJ_T0040649.1 MGP_CASTEiJ_G0021087.1 mouse_genomes_project 15 43010406 43064251 - MGP_CASTEiJ_P0040649 Nudcd1 protein_coding protein_coding MGP_CASTEiJ_T0040650.1 MGP_CASTEiJ_G0021087.1 mouse_genomes_project 15 43011574 43063721 - MGP_CASTEiJ_P0040650 Nudcd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040651.1 MGP_CASTEiJ_G0021087.1 mouse_genomes_project 15 43031590 43063793 - MGP_CASTEiJ_P0040651 Nudcd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099042.1 MGP_CASTEiJ_G0035959.1 mouse_genomes_project 15 89946381 89948113 - Gm20621 sense_overlapping sense_overlapping MGP_CASTEiJ_T0099043.1 MGP_CASTEiJ_G0035959.1 mouse_genomes_project 15 89947104 89948122 - Gm20621 sense_overlapping sense_overlapping MGP_CASTEiJ_T0099044.1 MGP_CASTEiJ_G0035959.1 mouse_genomes_project 15 89947109 89948080 - Gm20621 sense_overlapping sense_overlapping MGP_CASTEiJ_T0040918.1 MGP_CASTEiJ_G0021177.1 mouse_genomes_project 15 72894334 72988486 - MGP_CASTEiJ_P0040918 Ago2 protein_coding protein_coding MGP_CASTEiJ_T0042396.1 MGP_CASTEiJ_G0021611.1 mouse_genomes_project 15 102253207 102296869 - MGP_CASTEiJ_P0042396 Slc11a2 protein_coding protein_coding MGP_CASTEiJ_T0042397.1 MGP_CASTEiJ_G0021611.1 mouse_genomes_project 15 102257240 102296921 - MGP_CASTEiJ_P0042397 Slc11a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042398.1 MGP_CASTEiJ_G0021611.1 mouse_genomes_project 15 102257721 102296816 - MGP_CASTEiJ_P0042398 Slc11a2 protein_coding protein_coding MGP_CASTEiJ_T0042399.1 MGP_CASTEiJ_G0021611.1 mouse_genomes_project 15 102266302 102277080 - MGP_CASTEiJ_P0042399 Slc11a2 protein_coding protein_coding MGP_CASTEiJ_T0042400.1 MGP_CASTEiJ_G0021611.1 mouse_genomes_project 15 102266490 102277259 - Slc11a2 protein_coding retained_intron MGP_CASTEiJ_T0042401.1 MGP_CASTEiJ_G0021611.1 mouse_genomes_project 15 102280240 102298907 - MGP_CASTEiJ_P0042401 Slc11a2 protein_coding protein_coding MGP_CASTEiJ_T0042402.1 MGP_CASTEiJ_G0021611.1 mouse_genomes_project 15 102282096 102296783 - MGP_CASTEiJ_P0042402 Slc11a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042403.1 MGP_CASTEiJ_G0021611.1 mouse_genomes_project 15 102283205 102298034 - MGP_CASTEiJ_P0042403 Slc11a2 protein_coding protein_coding MGP_CASTEiJ_T0042404.1 MGP_CASTEiJ_G0021611.1 mouse_genomes_project 15 102284043 102297912 - MGP_CASTEiJ_P0042404 Slc11a2 protein_coding protein_coding MGP_CASTEiJ_T0040404.1 MGP_CASTEiJ_G0021000.1 mouse_genomes_project 15 10313261 10371688 - MGP_CASTEiJ_P0040404 Cdh6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040405.1 MGP_CASTEiJ_G0021000.1 mouse_genomes_project 15 10313290 10452144 - MGP_CASTEiJ_P0040405 Cdh6 protein_coding protein_coding MGP_CASTEiJ_T0042237.1 MGP_CASTEiJ_G0021553.1 mouse_genomes_project 15 100083616 100084675 + MGP_CASTEiJ_P0042237 Olfr281 protein_coding protein_coding MGP_CASTEiJ_T0041318.1 MGP_CASTEiJ_G0021287.1 mouse_genomes_project 15 77853551 77856765 - MGP_CASTEiJ_P0041318 1700025B11Rik protein_coding protein_coding MGP_CASTEiJ_T0041783.1 MGP_CASTEiJ_G0021423.1 mouse_genomes_project 15 84262270 84271188 - MGP_CASTEiJ_P0041783 Mcat protein_coding protein_coding MGP_CASTEiJ_T0100689.1 MGP_CASTEiJ_G0037602.1 mouse_genomes_project 15 73208300 73208423 + Gm24787 snoRNA snoRNA MGP_CASTEiJ_T0041067.1 MGP_CASTEiJ_G0021225.1 mouse_genomes_project 15 76046952 76055386 + MGP_CASTEiJ_P0041067 Zfp623 protein_coding protein_coding MGP_CASTEiJ_T0041244.1 MGP_CASTEiJ_G0021262.1 mouse_genomes_project 15 76804422 76811782 + MGP_CASTEiJ_P0041244 Kifc2 protein_coding protein_coding MGP_CASTEiJ_T0040975.1 MGP_CASTEiJ_G0021193.1 mouse_genomes_project 15 74683443 74687373 - MGP_CASTEiJ_P0040975 Slurp2 protein_coding protein_coding MGP_CASTEiJ_T0012705.1 MGP_CASTEiJ_G0010868.1 mouse_genomes_project 15 53343291 53343697 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009765.1 MGP_CASTEiJ_G0007953.1 mouse_genomes_project 15 12142197 12142383 - Gm24080 miRNA miRNA MGP_CASTEiJ_T0041371.1 MGP_CASTEiJ_G0021305.1 mouse_genomes_project 15 78811618 78817920 - MGP_CASTEiJ_P0041371 C1qtnf6 protein_coding protein_coding MGP_CASTEiJ_T0041372.1 MGP_CASTEiJ_G0021305.1 mouse_genomes_project 15 78811619 78817920 - C1qtnf6 protein_coding processed_transcript MGP_CASTEiJ_T0041373.1 MGP_CASTEiJ_G0021305.1 mouse_genomes_project 15 78813395 78815630 - C1qtnf6 protein_coding processed_transcript MGP_CASTEiJ_T0006580.1 MGP_CASTEiJ_G0005450.1 mouse_genomes_project 15 37256434 37417416 - lincRNA lincRNA MGP_CASTEiJ_T0041204.1 MGP_CASTEiJ_G0021253.1 mouse_genomes_project 15 76642297 76652209 - MGP_CASTEiJ_P0041204 Dgat1 protein_coding protein_coding MGP_CASTEiJ_T0041205.1 MGP_CASTEiJ_G0021253.1 mouse_genomes_project 15 76642299 76643463 - Dgat1 protein_coding retained_intron MGP_CASTEiJ_T0041206.1 MGP_CASTEiJ_G0021253.1 mouse_genomes_project 15 76642350 76643597 - Dgat1 protein_coding retained_intron MGP_CASTEiJ_T0041207.1 MGP_CASTEiJ_G0021253.1 mouse_genomes_project 15 76642806 76644228 - MGP_CASTEiJ_P0041207 Dgat1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041208.1 MGP_CASTEiJ_G0021253.1 mouse_genomes_project 15 76643558 76646888 - MGP_CASTEiJ_P0041208 Dgat1 protein_coding protein_coding MGP_CASTEiJ_T0041209.1 MGP_CASTEiJ_G0021253.1 mouse_genomes_project 15 76643873 76644605 - Dgat1 protein_coding retained_intron MGP_CASTEiJ_T0041210.1 MGP_CASTEiJ_G0021253.1 mouse_genomes_project 15 76644184 76645478 - Dgat1 protein_coding retained_intron MGP_CASTEiJ_T0041211.1 MGP_CASTEiJ_G0021253.1 mouse_genomes_project 15 76644234 76644946 - Dgat1 protein_coding retained_intron MGP_CASTEiJ_T0041375.1 MGP_CASTEiJ_G0021307.1 mouse_genomes_project 15 78847446 78862774 - MGP_CASTEiJ_P0041375 Rac2 protein_coding protein_coding MGP_CASTEiJ_T0009777.1 MGP_CASTEiJ_G0007965.1 mouse_genomes_project 15 37737092 37737203 - Mir692-1 miRNA miRNA MGP_CASTEiJ_T0042273.1 MGP_CASTEiJ_G0021567.1 mouse_genomes_project 15 100452971 100456922 + MGP_CASTEiJ_P0042273 Wnt1 protein_coding protein_coding MGP_CASTEiJ_T0042119.1 MGP_CASTEiJ_G0021517.1 mouse_genomes_project 15 95895702 95924395 + MGP_CASTEiJ_P0042119 Irak4 protein_coding protein_coding MGP_CASTEiJ_T0042120.1 MGP_CASTEiJ_G0021517.1 mouse_genomes_project 15 95895714 95922973 + MGP_CASTEiJ_P0042120 Irak4 protein_coding protein_coding MGP_CASTEiJ_T0042121.1 MGP_CASTEiJ_G0021517.1 mouse_genomes_project 15 95895724 95910456 + Irak4 protein_coding retained_intron MGP_CASTEiJ_T0042122.1 MGP_CASTEiJ_G0021517.1 mouse_genomes_project 15 95895859 95921733 + MGP_CASTEiJ_P0042122 Irak4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0016692.1 MGP_CASTEiJ_G0014602.1 mouse_genomes_project 15 906031 911330 - BC037032 processed_transcript TEC MGP_CASTEiJ_T0016693.1 MGP_CASTEiJ_G0014602.1 mouse_genomes_project 15 907603 914264 - BC037032 processed_transcript antisense MGP_CASTEiJ_T0016694.1 MGP_CASTEiJ_G0014602.1 mouse_genomes_project 15 908288 914273 - BC037032 processed_transcript antisense MGP_CASTEiJ_T0016695.1 MGP_CASTEiJ_G0014602.1 mouse_genomes_project 15 909814 914276 - BC037032 processed_transcript antisense MGP_CASTEiJ_T0016696.1 MGP_CASTEiJ_G0014602.1 mouse_genomes_project 15 910410 912911 - BC037032 processed_transcript antisense MGP_CASTEiJ_T0016697.1 MGP_CASTEiJ_G0014602.1 mouse_genomes_project 15 913231 914023 - BC037032 processed_transcript antisense MGP_CASTEiJ_T0040627.1 MGP_CASTEiJ_G0021076.1 mouse_genomes_project 15 38312088 38391381 - MGP_CASTEiJ_P0040627 Lrp12 protein_coding protein_coding MGP_CASTEiJ_T0040628.1 MGP_CASTEiJ_G0021076.1 mouse_genomes_project 15 38312088 38391175 - MGP_CASTEiJ_P0040628 Lrp12 protein_coding protein_coding MGP_CASTEiJ_T0040629.1 MGP_CASTEiJ_G0021076.1 mouse_genomes_project 15 38313410 38391203 - MGP_CASTEiJ_P0040629 Lrp12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040630.1 MGP_CASTEiJ_G0021076.1 mouse_genomes_project 15 38348499 38391093 - Lrp12 protein_coding retained_intron MGP_CASTEiJ_T0016706.1 MGP_CASTEiJ_G0014606.1 mouse_genomes_project 15 55838376 55842892 + Has2os processed_transcript antisense MGP_CASTEiJ_T0016707.1 MGP_CASTEiJ_G0014606.1 mouse_genomes_project 15 55841986 55934116 + Has2os processed_transcript antisense MGP_CASTEiJ_T0016708.1 MGP_CASTEiJ_G0014606.1 mouse_genomes_project 15 55842384 55933835 + Has2os processed_transcript antisense MGP_CASTEiJ_T0016709.1 MGP_CASTEiJ_G0014606.1 mouse_genomes_project 15 55919983 55933798 + Has2os processed_transcript lincRNA MGP_CASTEiJ_T0012704.1 MGP_CASTEiJ_G0010867.1 mouse_genomes_project 15 53074624 53076097 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016700.1 MGP_CASTEiJ_G0014605.1 mouse_genomes_project 15 35849009 35861066 - Gm15941 processed_transcript processed_transcript MGP_CASTEiJ_T0016701.1 MGP_CASTEiJ_G0014605.1 mouse_genomes_project 15 35849978 35857336 - Gm15941 processed_transcript processed_transcript MGP_CASTEiJ_T0016702.1 MGP_CASTEiJ_G0014605.1 mouse_genomes_project 15 35850169 35860550 - Gm15941 processed_transcript processed_transcript MGP_CASTEiJ_T0016703.1 MGP_CASTEiJ_G0014605.1 mouse_genomes_project 15 35850285 35861064 - Gm15941 processed_transcript processed_transcript MGP_CASTEiJ_T0016704.1 MGP_CASTEiJ_G0014605.1 mouse_genomes_project 15 35850438 35861055 - Gm15941 processed_transcript processed_transcript MGP_CASTEiJ_T0016705.1 MGP_CASTEiJ_G0014605.1 mouse_genomes_project 15 35855867 35861816 - Gm15941 processed_transcript processed_transcript MGP_CASTEiJ_T0011055.1 MGP_CASTEiJ_G0009243.1 mouse_genomes_project 15 41844799 41845095 - Gm22037 misc_RNA misc_RNA MGP_CASTEiJ_T0100694.1 MGP_CASTEiJ_G0037607.1 mouse_genomes_project 15 96041694 96041826 - Gm25546 snoRNA snoRNA MGP_CASTEiJ_T0041538.1 MGP_CASTEiJ_G0021349.1 mouse_genomes_project 15 80317800 80335250 - MGP_CASTEiJ_P0041538 Cbx7 protein_coding protein_coding MGP_CASTEiJ_T0041539.1 MGP_CASTEiJ_G0021349.1 mouse_genomes_project 15 80320041 80335328 - MGP_CASTEiJ_P0041539 Cbx7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041540.1 MGP_CASTEiJ_G0021349.1 mouse_genomes_project 15 80320055 80335373 - MGP_CASTEiJ_P0041540 Cbx7 protein_coding protein_coding MGP_CASTEiJ_T0041541.1 MGP_CASTEiJ_G0021349.1 mouse_genomes_project 15 80320058 80335502 - Cbx7 protein_coding retained_intron MGP_CASTEiJ_T0041542.1 MGP_CASTEiJ_G0021349.1 mouse_genomes_project 15 80322396 80336633 - MGP_CASTEiJ_P0041542 Cbx7 protein_coding protein_coding MGP_CASTEiJ_T0041543.1 MGP_CASTEiJ_G0021349.1 mouse_genomes_project 15 80322665 80376406 - MGP_CASTEiJ_P0041543 Cbx7 protein_coding protein_coding MGP_CASTEiJ_T0041544.1 MGP_CASTEiJ_G0021349.1 mouse_genomes_project 15 80323169 80335250 - MGP_CASTEiJ_P0041544 Cbx7 protein_coding protein_coding MGP_CASTEiJ_T0041545.1 MGP_CASTEiJ_G0021349.1 mouse_genomes_project 15 80333305 80336564 - Cbx7 protein_coding retained_intron MGP_CASTEiJ_T0042059.1 MGP_CASTEiJ_G0021502.1 mouse_genomes_project 15 92090047 92217034 - MGP_CASTEiJ_P0042059 Kif21a protein_coding protein_coding MGP_CASTEiJ_T0042060.1 MGP_CASTEiJ_G0021502.1 mouse_genomes_project 15 92090047 92217034 - MGP_CASTEiJ_P0042060 Kif21a protein_coding protein_coding MGP_CASTEiJ_T0042061.1 MGP_CASTEiJ_G0021502.1 mouse_genomes_project 15 92090047 92217034 - MGP_CASTEiJ_P0042061 Kif21a protein_coding protein_coding MGP_CASTEiJ_T0042062.1 MGP_CASTEiJ_G0021502.1 mouse_genomes_project 15 92090047 92217034 - MGP_CASTEiJ_P0042062 Kif21a protein_coding protein_coding MGP_CASTEiJ_T0042063.1 MGP_CASTEiJ_G0021502.1 mouse_genomes_project 15 92090047 92217034 - MGP_CASTEiJ_P0042063 Kif21a protein_coding protein_coding MGP_CASTEiJ_T0042064.1 MGP_CASTEiJ_G0021502.1 mouse_genomes_project 15 92090049 92216788 - MGP_CASTEiJ_P0042064 Kif21a protein_coding unknown_likely_coding MGP_CASTEiJ_T0042065.1 MGP_CASTEiJ_G0021502.1 mouse_genomes_project 15 92093712 92216819 - MGP_CASTEiJ_P0042065 Kif21a protein_coding unknown_likely_coding MGP_CASTEiJ_T0040540.1 MGP_CASTEiJ_G0021047.1 mouse_genomes_project 15 34365944 34514470 - MGP_CASTEiJ_P0040540 Rgs22 protein_coding protein_coding MGP_CASTEiJ_T0040541.1 MGP_CASTEiJ_G0021047.1 mouse_genomes_project 15 34366035 34396177 - MGP_CASTEiJ_P0040541 Rgs22 protein_coding protein_coding MGP_CASTEiJ_T0040542.1 MGP_CASTEiJ_G0021047.1 mouse_genomes_project 15 34366798 34483820 - MGP_CASTEiJ_P0040542 Rgs22 protein_coding protein_coding MGP_CASTEiJ_T0040543.1 MGP_CASTEiJ_G0021047.1 mouse_genomes_project 15 34404383 34449202 - MGP_CASTEiJ_P0040543 Rgs22 protein_coding protein_coding MGP_CASTEiJ_T0040544.1 MGP_CASTEiJ_G0021047.1 mouse_genomes_project 15 34513208 34514455 - Rgs22 protein_coding retained_intron MGP_CASTEiJ_T0041257.1 MGP_CASTEiJ_G0021266.1 mouse_genomes_project 15 76851000 76853698 + MGP_CASTEiJ_P0041257 Mfsd3 protein_coding protein_coding MGP_CASTEiJ_T0040535.1 MGP_CASTEiJ_G0021046.1 mouse_genomes_project 15 34290998 34302133 - MGP_CASTEiJ_P0040535 Cox6c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040536.1 MGP_CASTEiJ_G0021046.1 mouse_genomes_project 15 34297154 34305051 - MGP_CASTEiJ_P0040536 Cox6c protein_coding protein_coding MGP_CASTEiJ_T0040537.1 MGP_CASTEiJ_G0021046.1 mouse_genomes_project 15 34297158 34304450 - MGP_CASTEiJ_P0040537 Cox6c protein_coding protein_coding MGP_CASTEiJ_T0040538.1 MGP_CASTEiJ_G0021046.1 mouse_genomes_project 15 34297161 34305012 - Cox6c protein_coding retained_intron MGP_CASTEiJ_T0040539.1 MGP_CASTEiJ_G0021046.1 mouse_genomes_project 15 34302188 34304814 - MGP_CASTEiJ_P0040539 Cox6c protein_coding protein_coding MGP_CASTEiJ_T0100698.1 MGP_CASTEiJ_G0037611.1 mouse_genomes_project 15 100164822 100164959 - Snora2b snoRNA snoRNA MGP_CASTEiJ_T0041082.1 MGP_CASTEiJ_G0021230.1 mouse_genomes_project 15 76122940 76145860 + MGP_CASTEiJ_P0041082 protein_coding protein_coding MGP_CASTEiJ_T0041083.1 MGP_CASTEiJ_G0021230.1 mouse_genomes_project 15 76127640 76145339 + MGP_CASTEiJ_P0041083 protein_coding protein_coding MGP_CASTEiJ_T0041084.1 MGP_CASTEiJ_G0021230.1 mouse_genomes_project 15 76144872 76148494 + protein_coding processed_transcript MGP_CASTEiJ_T0041085.1 MGP_CASTEiJ_G0021230.1 mouse_genomes_project 15 76145571 76157237 + protein_coding processed_transcript MGP_CASTEiJ_T0041086.1 MGP_CASTEiJ_G0021230.1 mouse_genomes_project 15 76147269 76148555 + protein_coding retained_intron MGP_CASTEiJ_T0040679.1 MGP_CASTEiJ_G0021095.1 mouse_genomes_project 15 50764383 50847067 - MGP_CASTEiJ_P0040679 Eif3h protein_coding protein_coding MGP_CASTEiJ_T0040680.1 MGP_CASTEiJ_G0021095.1 mouse_genomes_project 15 50764384 50847083 - MGP_CASTEiJ_P0040680 Eif3h protein_coding unknown_likely_coding MGP_CASTEiJ_T0042363.1 MGP_CASTEiJ_G0021599.1 mouse_genomes_project 15 101492595 101533032 - MGP_CASTEiJ_P0042363 Cers5 protein_coding protein_coding MGP_CASTEiJ_T0042364.1 MGP_CASTEiJ_G0021599.1 mouse_genomes_project 15 101496068 101507268 - MGP_CASTEiJ_P0042364 Cers5 protein_coding protein_coding MGP_CASTEiJ_T0042365.1 MGP_CASTEiJ_G0021599.1 mouse_genomes_project 15 101498151 101533455 - MGP_CASTEiJ_P0042365 Cers5 protein_coding protein_coding MGP_CASTEiJ_T0042366.1 MGP_CASTEiJ_G0021599.1 mouse_genomes_project 15 101504741 101532662 - MGP_CASTEiJ_P0042366 Cers5 protein_coding protein_coding MGP_CASTEiJ_T0040948.1 MGP_CASTEiJ_G0021184.1 mouse_genomes_project 15 73733733 73739072 + MGP_CASTEiJ_P0040948 Gm6569 protein_coding protein_coding MGP_CASTEiJ_T0006579.1 MGP_CASTEiJ_G0005449.1 mouse_genomes_project 15 37062629 37113215 - 2310043O21Rik lincRNA lincRNA MGP_CASTEiJ_T0098839.1 MGP_CASTEiJ_G0035766.1 mouse_genomes_project 15 35660459 35661217 + Gm16137 sense_intronic sense_intronic MGP_CASTEiJ_T0041722.1 MGP_CASTEiJ_G0021401.1 mouse_genomes_project 15 82943524 82953664 + Smdt1 protein_coding processed_transcript MGP_CASTEiJ_T0041725.1 MGP_CASTEiJ_G0021401.1 mouse_genomes_project 15 82945563 82953613 + Smdt1 protein_coding processed_transcript MGP_CASTEiJ_T0041727.1 MGP_CASTEiJ_G0021401.1 mouse_genomes_project 15 82950543 82953695 + MGP_CASTEiJ_P0041727 Smdt1 protein_coding protein_coding MGP_CASTEiJ_T0041728.1 MGP_CASTEiJ_G0021401.1 mouse_genomes_project 15 82950603 82953696 + MGP_CASTEiJ_P0041728 Smdt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041729.1 MGP_CASTEiJ_G0021401.1 mouse_genomes_project 15 82951815 82953474 + MGP_CASTEiJ_P0041729 Smdt1 protein_coding protein_coding MGP_CASTEiJ_T0040490.1 MGP_CASTEiJ_G0021031.1 mouse_genomes_project 15 31411407 31893956 + MGP_CASTEiJ_P0040490 Cpq protein_coding protein_coding MGP_CASTEiJ_T0042539.1 MGP_CASTEiJ_G0021667.1 mouse_genomes_project 15 104373808 104379050 + Pfdn5 protein_coding retained_intron MGP_CASTEiJ_T0042540.1 MGP_CASTEiJ_G0021667.1 mouse_genomes_project 15 104373829 104379128 + MGP_CASTEiJ_P0042540 Pfdn5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042541.1 MGP_CASTEiJ_G0021667.1 mouse_genomes_project 15 104373829 104378991 + MGP_CASTEiJ_P0042541 Pfdn5 protein_coding protein_coding MGP_CASTEiJ_T0042542.1 MGP_CASTEiJ_G0021667.1 mouse_genomes_project 15 104373829 104379137 + MGP_CASTEiJ_P0042542 Pfdn5 protein_coding protein_coding MGP_CASTEiJ_T0042543.1 MGP_CASTEiJ_G0021667.1 mouse_genomes_project 15 104374023 104376460 + MGP_CASTEiJ_P0042543 Pfdn5 protein_coding protein_coding MGP_CASTEiJ_T0042544.1 MGP_CASTEiJ_G0021667.1 mouse_genomes_project 15 104374031 104379104 + MGP_CASTEiJ_P0042544 Pfdn5 protein_coding protein_coding MGP_CASTEiJ_T0042545.1 MGP_CASTEiJ_G0021667.1 mouse_genomes_project 15 104374050 104378949 + MGP_CASTEiJ_P0042545 Pfdn5 protein_coding protein_coding MGP_CASTEiJ_T0041180.1 MGP_CASTEiJ_G0021247.1 mouse_genomes_project 15 76500518 76503020 + MGP_CASTEiJ_P0041180 Hgh1 protein_coding protein_coding MGP_CASTEiJ_T0040802.1 MGP_CASTEiJ_G0021148.1 mouse_genomes_project 15 61348961 61353977 + MGP_CASTEiJ_P0040802 Myc protein_coding protein_coding MGP_CASTEiJ_T0040803.1 MGP_CASTEiJ_G0021148.1 mouse_genomes_project 15 61349011 61353975 + MGP_CASTEiJ_P0040803 Myc protein_coding protein_coding MGP_CASTEiJ_T0040804.1 MGP_CASTEiJ_G0021148.1 mouse_genomes_project 15 61349543 61353532 + MGP_CASTEiJ_P0040804 Myc protein_coding protein_coding MGP_CASTEiJ_T0040805.1 MGP_CASTEiJ_G0021148.1 mouse_genomes_project 15 61350655 61351237 + MGP_CASTEiJ_P0040805 Myc protein_coding protein_coding MGP_CASTEiJ_T0040806.1 MGP_CASTEiJ_G0021148.1 mouse_genomes_project 15 61350694 61353879 + MGP_CASTEiJ_P0040806 Myc protein_coding unknown_likely_coding MGP_CASTEiJ_T0101850.1 MGP_CASTEiJ_G0038598.1 mouse_genomes_project 15 63426130 63427681 + unitary_pseudogene processed_transcript MGP_CASTEiJ_T0040274.1 MGP_CASTEiJ_G0020967.1 mouse_genomes_project 15 5661071 5745869 - MGP_CASTEiJ_P0040274 Slc1a3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040275.1 MGP_CASTEiJ_G0020967.1 mouse_genomes_project 15 5661072 5747927 - MGP_CASTEiJ_P0040275 Slc1a3 protein_coding protein_coding MGP_CASTEiJ_T0040276.1 MGP_CASTEiJ_G0020967.1 mouse_genomes_project 15 5661674 5681403 - Slc1a3 protein_coding retained_intron MGP_CASTEiJ_T0040277.1 MGP_CASTEiJ_G0020967.1 mouse_genomes_project 15 5670682 5671786 - Slc1a3 protein_coding retained_intron MGP_CASTEiJ_T0040278.1 MGP_CASTEiJ_G0020967.1 mouse_genomes_project 15 5712934 5747579 - Slc1a3 protein_coding processed_transcript MGP_CASTEiJ_T0040279.1 MGP_CASTEiJ_G0020967.1 mouse_genomes_project 15 5722475 5747572 - MGP_CASTEiJ_P0040279 Slc1a3 protein_coding protein_coding MGP_CASTEiJ_T0040280.1 MGP_CASTEiJ_G0020967.1 mouse_genomes_project 15 5725388 5747659 - Slc1a3 protein_coding retained_intron MGP_CASTEiJ_T0040281.1 MGP_CASTEiJ_G0020967.1 mouse_genomes_project 15 5744782 5747644 - Slc1a3 protein_coding retained_intron MGP_CASTEiJ_T0040282.1 MGP_CASTEiJ_G0020967.1 mouse_genomes_project 15 5745899 5746749 - Slc1a3 protein_coding processed_transcript MGP_CASTEiJ_T0042357.1 MGP_CASTEiJ_G0021595.1 mouse_genomes_project 15 101457212 101457499 - MGP_CASTEiJ_P0042357 Gm17349 protein_coding protein_coding MGP_CASTEiJ_T0012723.1 MGP_CASTEiJ_G0010886.1 mouse_genomes_project 15 82207918 82208526 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0041856.1 MGP_CASTEiJ_G0021448.1 mouse_genomes_project 15 86179002 86318635 + MGP_CASTEiJ_P0041856 Atxn10 protein_coding protein_coding MGP_CASTEiJ_T0041837.1 MGP_CASTEiJ_G0021439.1 mouse_genomes_project 15 85597267 85668395 - MGP_CASTEiJ_P0041837 Phf21b protein_coding protein_coding MGP_CASTEiJ_T0041838.1 MGP_CASTEiJ_G0021439.1 mouse_genomes_project 15 85597268 85599341 - Phf21b protein_coding processed_transcript MGP_CASTEiJ_T0041839.1 MGP_CASTEiJ_G0021439.1 mouse_genomes_project 15 85597270 85669334 - MGP_CASTEiJ_P0041839 Phf21b protein_coding protein_coding MGP_CASTEiJ_T0041840.1 MGP_CASTEiJ_G0021439.1 mouse_genomes_project 15 85598020 85669036 - MGP_CASTEiJ_P0041840 Phf21b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041841.1 MGP_CASTEiJ_G0021439.1 mouse_genomes_project 15 85599262 85603266 - Phf21b protein_coding retained_intron MGP_CASTEiJ_T0041842.1 MGP_CASTEiJ_G0021439.1 mouse_genomes_project 15 85606191 85615805 - Phf21b protein_coding retained_intron MGP_CASTEiJ_T0042411.1 MGP_CASTEiJ_G0021616.1 mouse_genomes_project 15 102451331 102474631 - MGP_CASTEiJ_P0042411 Pou6f1 protein_coding protein_coding MGP_CASTEiJ_T0042412.1 MGP_CASTEiJ_G0021616.1 mouse_genomes_project 15 102451331 102467007 - MGP_CASTEiJ_P0042412 Pou6f1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042413.1 MGP_CASTEiJ_G0021616.1 mouse_genomes_project 15 102451331 102461328 - MGP_CASTEiJ_P0042413 Pou6f1 protein_coding protein_coding MGP_CASTEiJ_T0042414.1 MGP_CASTEiJ_G0021616.1 mouse_genomes_project 15 102451334 102456189 - Pou6f1 protein_coding retained_intron MGP_CASTEiJ_T0042415.1 MGP_CASTEiJ_G0021616.1 mouse_genomes_project 15 102454314 102470137 - MGP_CASTEiJ_P0042415 Pou6f1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042416.1 MGP_CASTEiJ_G0021616.1 mouse_genomes_project 15 102454314 102470137 - MGP_CASTEiJ_P0042416 Pou6f1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042417.1 MGP_CASTEiJ_G0021616.1 mouse_genomes_project 15 102454314 102470137 - MGP_CASTEiJ_P0042417 Pou6f1 protein_coding protein_coding MGP_CASTEiJ_T0042418.1 MGP_CASTEiJ_G0021616.1 mouse_genomes_project 15 102461253 102467110 - Pou6f1 protein_coding retained_intron MGP_CASTEiJ_T0042419.1 MGP_CASTEiJ_G0021616.1 mouse_genomes_project 15 102461578 102474446 - Pou6f1 protein_coding processed_transcript MGP_CASTEiJ_T0042420.1 MGP_CASTEiJ_G0021616.1 mouse_genomes_project 15 102463587 102474446 - Pou6f1 protein_coding processed_transcript MGP_CASTEiJ_T0041666.1 MGP_CASTEiJ_G0021381.1 mouse_genomes_project 15 82430425 82478164 + MGP_CASTEiJ_P0041666 Aco2 protein_coding protein_coding MGP_CASTEiJ_T0041667.1 MGP_CASTEiJ_G0021381.1 mouse_genomes_project 15 82430600 82448944 + Aco2 protein_coding retained_intron MGP_CASTEiJ_T0041668.1 MGP_CASTEiJ_G0021381.1 mouse_genomes_project 15 82430600 82448945 + Aco2 protein_coding processed_transcript MGP_CASTEiJ_T0041669.1 MGP_CASTEiJ_G0021381.1 mouse_genomes_project 15 82467674 82473544 + Aco2 protein_coding retained_intron MGP_CASTEiJ_T0041670.1 MGP_CASTEiJ_G0021381.1 mouse_genomes_project 15 82467955 82473198 + Aco2 protein_coding retained_intron MGP_CASTEiJ_T0041671.1 MGP_CASTEiJ_G0021381.1 mouse_genomes_project 15 82473323 82476322 + Aco2 protein_coding retained_intron MGP_CASTEiJ_T0042339.1 MGP_CASTEiJ_G0021591.1 mouse_genomes_project 15 101327087 101332590 + MGP_CASTEiJ_P0042339 Aqp2 protein_coding protein_coding MGP_CASTEiJ_T0041035.1 MGP_CASTEiJ_G0021214.1 mouse_genomes_project 15 75742473 75764330 - MGP_CASTEiJ_P0041035 Top1mt protein_coding protein_coding MGP_CASTEiJ_T0009797.1 MGP_CASTEiJ_G0007985.1 mouse_genomes_project 15 80400170 80400261 - Mir7213 miRNA miRNA MGP_CASTEiJ_T0042497.1 MGP_CASTEiJ_G0021645.1 mouse_genomes_project 15 103758771 103770731 - MGP_CASTEiJ_P0042497 Krt72 protein_coding protein_coding MGP_CASTEiJ_T0042498.1 MGP_CASTEiJ_G0021645.1 mouse_genomes_project 15 103758932 103763107 - Krt72 protein_coding processed_transcript MGP_CASTEiJ_T0099461.1 MGP_CASTEiJ_G0036374.1 mouse_genomes_project 15 89887831 89887938 + Gm23144 snRNA snRNA MGP_CASTEiJ_T0042222.1 MGP_CASTEiJ_G0021547.1 mouse_genomes_project 15 99889797 99901167 - MGP_CASTEiJ_P0042222 Zfp641 protein_coding protein_coding MGP_CASTEiJ_T0042223.1 MGP_CASTEiJ_G0021547.1 mouse_genomes_project 15 99890333 99901120 - MGP_CASTEiJ_P0042223 Zfp641 protein_coding protein_coding MGP_CASTEiJ_T0016734.1 MGP_CASTEiJ_G0014621.1 mouse_genomes_project 15 90620814 90624396 - Gm15609 processed_transcript processed_transcript MGP_CASTEiJ_T0041562.1 MGP_CASTEiJ_G0021356.1 mouse_genomes_project 15 80670570 80672925 + MGP_CASTEiJ_P0041562 Atf4 protein_coding protein_coding MGP_CASTEiJ_T0006603.1 MGP_CASTEiJ_G0005462.1 mouse_genomes_project 15 75026345 75029221 - Gm28502 lincRNA lincRNA MGP_CASTEiJ_T0041851.1 MGP_CASTEiJ_G0021446.1 mouse_genomes_project 15 85957207 85971411 + MGP_CASTEiJ_P0041851 Ribc2 protein_coding protein_coding MGP_CASTEiJ_T0041560.1 MGP_CASTEiJ_G0021355.1 mouse_genomes_project 15 80651212 80668763 + MGP_CASTEiJ_P0041560 Mief1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041561.1 MGP_CASTEiJ_G0021355.1 mouse_genomes_project 15 80651298 80668763 + MGP_CASTEiJ_P0041561 Mief1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042271.1 MGP_CASTEiJ_G0021566.1 mouse_genomes_project 15 100427262 100434271 - MGP_CASTEiJ_P0042271 Wnt10b protein_coding protein_coding MGP_CASTEiJ_T0042272.1 MGP_CASTEiJ_G0021566.1 mouse_genomes_project 15 100427711 100433386 - MGP_CASTEiJ_P0042272 Wnt10b protein_coding protein_coding MGP_CASTEiJ_T0041202.1 MGP_CASTEiJ_G0021252.1 mouse_genomes_project 15 76617588 76641255 + MGP_CASTEiJ_P0041202 Hsf1 protein_coding protein_coding MGP_CASTEiJ_T0041203.1 MGP_CASTEiJ_G0021252.1 mouse_genomes_project 15 76617744 76642200 + MGP_CASTEiJ_P0041203 Hsf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040474.1 MGP_CASTEiJ_G0021024.1 mouse_genomes_project 15 29741431 29828896 - MGP_CASTEiJ_P0040474 March6 protein_coding protein_coding MGP_CASTEiJ_T0041774.1 MGP_CASTEiJ_G0021418.1 mouse_genomes_project 15 83904874 83941574 - MGP_CASTEiJ_P0041774 A4galt protein_coding protein_coding MGP_CASTEiJ_T0041775.1 MGP_CASTEiJ_G0021418.1 mouse_genomes_project 15 83904874 83941617 - MGP_CASTEiJ_P0041775 A4galt protein_coding protein_coding MGP_CASTEiJ_T0042136.1 MGP_CASTEiJ_G0021524.1 mouse_genomes_project 15 97262795 97268339 - MGP_CASTEiJ_P0042136 Gm17546 protein_coding protein_coding MGP_CASTEiJ_T0099439.1 MGP_CASTEiJ_G0036352.1 mouse_genomes_project 15 52386646 52386712 + Gm27926 snRNA snRNA MGP_CASTEiJ_T0042291.1 MGP_CASTEiJ_G0021575.1 mouse_genomes_project 15 100721419 100729532 + MGP_CASTEiJ_P0042291 protein_coding protein_coding MGP_CASTEiJ_T0041912.1 MGP_CASTEiJ_G0021466.1 mouse_genomes_project 15 89871761 89878791 + MGP_CASTEiJ_P0041912 Creld2 protein_coding protein_coding MGP_CASTEiJ_T0100688.1 MGP_CASTEiJ_G0037601.1 mouse_genomes_project 15 69313649 69313779 - Gm23987 snoRNA snoRNA MGP_CASTEiJ_T0006583.1 MGP_CASTEiJ_G0005453.1 mouse_genomes_project 15 41295831 41326091 + Gm17473 lincRNA lincRNA MGP_CASTEiJ_T0040784.1 MGP_CASTEiJ_G0021139.1 mouse_genomes_project 15 58202458 58238834 - MGP_CASTEiJ_P0040784 Mtss1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040785.1 MGP_CASTEiJ_G0021139.1 mouse_genomes_project 15 58202611 58360264 - MGP_CASTEiJ_P0040785 Mtss1 protein_coding protein_coding MGP_CASTEiJ_T0040786.1 MGP_CASTEiJ_G0021139.1 mouse_genomes_project 15 58204716 58359794 - MGP_CASTEiJ_P0040786 Mtss1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042375.1 MGP_CASTEiJ_G0021603.1 mouse_genomes_project 15 101821658 102033019 + MGP_CASTEiJ_P0042375 Dip2b protein_coding protein_coding MGP_CASTEiJ_T0042376.1 MGP_CASTEiJ_G0021603.1 mouse_genomes_project 15 101958628 102029235 + MGP_CASTEiJ_P0042376 Dip2b protein_coding protein_coding MGP_CASTEiJ_T0042377.1 MGP_CASTEiJ_G0021603.1 mouse_genomes_project 15 101958628 102033019 + MGP_CASTEiJ_P0042377 Dip2b protein_coding protein_coding MGP_CASTEiJ_T0042378.1 MGP_CASTEiJ_G0021603.1 mouse_genomes_project 15 102016656 102019173 + Dip2b protein_coding processed_transcript MGP_CASTEiJ_T0040632.1 MGP_CASTEiJ_G0021078.1 mouse_genomes_project 15 39132368 39605568 + MGP_CASTEiJ_P0040632 Zfpm2 protein_coding protein_coding MGP_CASTEiJ_T0042079.1 MGP_CASTEiJ_G0021507.1 mouse_genomes_project 15 93056688 93080782 + MGP_CASTEiJ_P0042079 Smgc protein_coding protein_coding MGP_CASTEiJ_T0042080.1 MGP_CASTEiJ_G0021507.1 mouse_genomes_project 15 93056751 93081152 + MGP_CASTEiJ_P0042080 Smgc protein_coding protein_coding MGP_CASTEiJ_T0042081.1 MGP_CASTEiJ_G0021507.1 mouse_genomes_project 15 93056751 93081151 + MGP_CASTEiJ_P0042081 Smgc protein_coding protein_coding MGP_CASTEiJ_T0042082.1 MGP_CASTEiJ_G0021507.1 mouse_genomes_project 15 93056751 93081152 + MGP_CASTEiJ_P0042082 Smgc protein_coding protein_coding MGP_CASTEiJ_T0042083.1 MGP_CASTEiJ_G0021507.1 mouse_genomes_project 15 93056759 93064896 + MGP_CASTEiJ_P0042083 Smgc protein_coding protein_coding MGP_CASTEiJ_T0042084.1 MGP_CASTEiJ_G0021507.1 mouse_genomes_project 15 93059937 93081153 + MGP_CASTEiJ_P0042084 Smgc protein_coding protein_coding MGP_CASTEiJ_T0042085.1 MGP_CASTEiJ_G0021507.1 mouse_genomes_project 15 93062872 93081155 + MGP_CASTEiJ_P0042085 Smgc protein_coding protein_coding MGP_CASTEiJ_T0042086.1 MGP_CASTEiJ_G0021507.1 mouse_genomes_project 15 93064729 93081155 + MGP_CASTEiJ_P0042086 Smgc protein_coding protein_coding MGP_CASTEiJ_T0040854.1 MGP_CASTEiJ_G0021160.1 mouse_genomes_project 15 65446638 65486236 - MGP_CASTEiJ_P0040854 Hhla1 protein_coding protein_coding MGP_CASTEiJ_T0003519.1 MGP_CASTEiJ_G0003195.1 mouse_genomes_project 15 101587224 101602091 + Gm17057 antisense antisense MGP_CASTEiJ_T0012698.1 MGP_CASTEiJ_G0010861.1 mouse_genomes_project 15 41837387 41838349 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0041499.1 MGP_CASTEiJ_G0021342.1 mouse_genomes_project 15 80080634 80106421 + MGP_CASTEiJ_P0041499 Gtpbp1 protein_coding protein_coding MGP_CASTEiJ_T0003491.1 MGP_CASTEiJ_G0003174.1 mouse_genomes_project 15 71532049 71536764 + Gm16308 antisense antisense MGP_CASTEiJ_T0040515.1 MGP_CASTEiJ_G0021038.1 mouse_genomes_project 15 32753747 32777140 + MGP_CASTEiJ_P0040515 Erich5 protein_coding protein_coding MGP_CASTEiJ_T0098520.1 MGP_CASTEiJ_G0035451.1 mouse_genomes_project 15 82947258 82947377 + n-R5s41 rRNA rRNA MGP_CASTEiJ_T0042667.1 MGP_CASTEiJ_G0021703.1 mouse_genomes_project 15 105627875 105658116 + MGP_CASTEiJ_P0042667 Pde1b protein_coding protein_coding MGP_CASTEiJ_T0040443.1 MGP_CASTEiJ_G0021011.1 mouse_genomes_project 15 24012214 24026283 + MGP_CASTEiJ_P0040443 Zfp622 protein_coding protein_coding MGP_CASTEiJ_T0040444.1 MGP_CASTEiJ_G0021011.1 mouse_genomes_project 15 24012468 24034610 + MGP_CASTEiJ_P0040444 Zfp622 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040418.1 MGP_CASTEiJ_G0021005.1 mouse_genomes_project 15 20402703 21292009 + MGP_CASTEiJ_P0040418 Cdh18 protein_coding protein_coding MGP_CASTEiJ_T0040419.1 MGP_CASTEiJ_G0021005.1 mouse_genomes_project 15 20913474 21070779 + Cdh18 protein_coding retained_intron MGP_CASTEiJ_T0040420.1 MGP_CASTEiJ_G0021005.1 mouse_genomes_project 15 20913482 21347857 + Cdh18 protein_coding retained_intron MGP_CASTEiJ_T0040421.1 MGP_CASTEiJ_G0021005.1 mouse_genomes_project 15 20913482 21376146 + MGP_CASTEiJ_P0040421 Cdh18 protein_coding protein_coding MGP_CASTEiJ_T0040422.1 MGP_CASTEiJ_G0021005.1 mouse_genomes_project 15 21069339 21375793 + MGP_CASTEiJ_P0040422 Cdh18 protein_coding protein_coding MGP_CASTEiJ_T0040423.1 MGP_CASTEiJ_G0021005.1 mouse_genomes_project 15 21069501 21375757 + MGP_CASTEiJ_P0040423 Cdh18 protein_coding protein_coding MGP_CASTEiJ_T0040424.1 MGP_CASTEiJ_G0021005.1 mouse_genomes_project 15 21091558 21376446 + MGP_CASTEiJ_P0040424 Cdh18 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042405.1 MGP_CASTEiJ_G0021612.1 mouse_genomes_project 15 102295960 102303827 + MGP_CASTEiJ_P0042405 Gm5475 protein_coding protein_coding MGP_CASTEiJ_T0042406.1 MGP_CASTEiJ_G0021612.1 mouse_genomes_project 15 102297006 102304536 + MGP_CASTEiJ_P0042406 Gm5475 protein_coding protein_coding MGP_CASTEiJ_T0042421.1 MGP_CASTEiJ_G0021617.1 mouse_genomes_project 15 102497450 102502547 + MGP_CASTEiJ_P0042421 Dazap2 protein_coding protein_coding MGP_CASTEiJ_T0099438.1 MGP_CASTEiJ_G0036351.1 mouse_genomes_project 15 51491247 51491351 + Gm23545 snRNA snRNA MGP_CASTEiJ_T0042235.1 MGP_CASTEiJ_G0021552.1 mouse_genomes_project 15 100055158 100063531 + MGP_CASTEiJ_P0042235 Olfr282 protein_coding protein_coding MGP_CASTEiJ_T0042236.1 MGP_CASTEiJ_G0021552.1 mouse_genomes_project 15 100063085 100064013 + MGP_CASTEiJ_P0042236 Olfr282 protein_coding protein_coding MGP_CASTEiJ_T0102085.1 MGP_CASTEiJ_G0038810.1 mouse_genomes_project 15 75166341 75170090 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0040487.1 MGP_CASTEiJ_G0021029.1 mouse_genomes_project 15 30684750 31046656 + MGP_CASTEiJ_P0040487 Sema5a protein_coding unknown_likely_coding MGP_CASTEiJ_T0100668.1 MGP_CASTEiJ_G0037581.1 mouse_genomes_project 15 30574826 30574897 - Snord123 snoRNA snoRNA MGP_CASTEiJ_T0040990.1 MGP_CASTEiJ_G0021200.1 mouse_genomes_project 15 74789188 74801972 - MGP_CASTEiJ_P0040990 Cyp11b1 protein_coding protein_coding MGP_CASTEiJ_T0042268.1 MGP_CASTEiJ_G0021565.1 mouse_genomes_project 15 100389526 100418988 - MGP_CASTEiJ_P0042268 Arf3 protein_coding protein_coding MGP_CASTEiJ_T0042269.1 MGP_CASTEiJ_G0021565.1 mouse_genomes_project 15 100392856 100418991 - Arf3 protein_coding processed_transcript MGP_CASTEiJ_T0042270.1 MGP_CASTEiJ_G0021565.1 mouse_genomes_project 15 100394395 100418769 - MGP_CASTEiJ_P0042270 Arf3 protein_coding protein_coding MGP_CASTEiJ_T0009772.1 MGP_CASTEiJ_G0007960.1 mouse_genomes_project 15 34620800 34620919 - Mir8097 miRNA miRNA MGP_CASTEiJ_T0041704.1 MGP_CASTEiJ_G0021390.1 mouse_genomes_project 15 82650798 82714250 + MGP_CASTEiJ_P0041704 Mei1 protein_coding protein_coding MGP_CASTEiJ_T0041705.1 MGP_CASTEiJ_G0021390.1 mouse_genomes_project 15 82650955 82714414 + MGP_CASTEiJ_P0041705 Mei1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041706.1 MGP_CASTEiJ_G0021390.1 mouse_genomes_project 15 82667272 82714400 + MGP_CASTEiJ_P0041706 Mei1 protein_coding protein_coding MGP_CASTEiJ_T0041707.1 MGP_CASTEiJ_G0021390.1 mouse_genomes_project 15 82667284 82714402 + MGP_CASTEiJ_P0041707 Mei1 protein_coding protein_coding MGP_CASTEiJ_T0041708.1 MGP_CASTEiJ_G0021390.1 mouse_genomes_project 15 82667985 82714327 + MGP_CASTEiJ_P0041708 Mei1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042133.1 MGP_CASTEiJ_G0021523.1 mouse_genomes_project 15 97228842 97422280 + MGP_CASTEiJ_P0042133 Ano6 protein_coding protein_coding MGP_CASTEiJ_T0042134.1 MGP_CASTEiJ_G0021523.1 mouse_genomes_project 15 97228949 97419783 + MGP_CASTEiJ_P0042134 Ano6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042135.1 MGP_CASTEiJ_G0021523.1 mouse_genomes_project 15 97228983 97422293 + MGP_CASTEiJ_P0042135 Ano6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041486.1 MGP_CASTEiJ_G0021334.1 mouse_genomes_project 15 79858580 79881390 - MGP_CASTEiJ_P0041486 Kcnj4 protein_coding protein_coding MGP_CASTEiJ_T0041898.1 MGP_CASTEiJ_G0021461.1 mouse_genomes_project 15 88600348 88738516 + MGP_CASTEiJ_P0041898 Fam19a5 protein_coding protein_coding MGP_CASTEiJ_T0040793.1 MGP_CASTEiJ_G0021142.1 mouse_genomes_project 15 58682266 58859144 + MGP_CASTEiJ_P0040793 Nsmce2 protein_coding protein_coding MGP_CASTEiJ_T0040794.1 MGP_CASTEiJ_G0021142.1 mouse_genomes_project 15 58682266 58920606 + MGP_CASTEiJ_P0040794 Nsmce2 protein_coding protein_coding MGP_CASTEiJ_T0042173.1 MGP_CASTEiJ_G0021536.1 mouse_genomes_project 15 99353702 99362021 + MGP_CASTEiJ_P0042173 Slc48a1 protein_coding protein_coding MGP_CASTEiJ_T0042174.1 MGP_CASTEiJ_G0021536.1 mouse_genomes_project 15 99353775 99359297 + MGP_CASTEiJ_P0042174 Slc48a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012707.1 MGP_CASTEiJ_G0010870.1 mouse_genomes_project 15 55537956 55538187 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011059.1 MGP_CASTEiJ_G0009247.1 mouse_genomes_project 15 61482172 61482258 + Gm27718 misc_RNA misc_RNA MGP_CASTEiJ_T0041045.1 MGP_CASTEiJ_G0021220.1 mouse_genomes_project 15 75995623 75999138 - MGP_CASTEiJ_P0041045 Naprt protein_coding protein_coding MGP_CASTEiJ_T0040801.1 MGP_CASTEiJ_G0021147.1 mouse_genomes_project 15 60254258 60260697 - MGP_CASTEiJ_P0040801 A1bg protein_coding protein_coding MGP_CASTEiJ_T0042485.1 MGP_CASTEiJ_G0021634.1 mouse_genomes_project 15 103399376 103408647 + MGP_CASTEiJ_P0042485 Krt88 protein_coding protein_coding MGP_CASTEiJ_T0003514.1 MGP_CASTEiJ_G0003190.1 mouse_genomes_project 15 100210251 100212529 + 9330020H09Rik antisense antisense MGP_CASTEiJ_T0040798.1 MGP_CASTEiJ_G0021145.1 mouse_genomes_project 15 59368846 59370602 - MGP_CASTEiJ_P0040798 4933412E24Rik protein_coding protein_coding MGP_CASTEiJ_T0042359.1 MGP_CASTEiJ_G0021597.1 mouse_genomes_project 15 101474477 101481826 + MGP_CASTEiJ_P0042359 Gpd1 protein_coding protein_coding MGP_CASTEiJ_T0042360.1 MGP_CASTEiJ_G0021597.1 mouse_genomes_project 15 101474541 101480613 + MGP_CASTEiJ_P0042360 Gpd1 protein_coding protein_coding MGP_CASTEiJ_T0042361.1 MGP_CASTEiJ_G0021597.1 mouse_genomes_project 15 101476956 101479041 + Gpd1 protein_coding retained_intron MGP_CASTEiJ_T0040858.1 MGP_CASTEiJ_G0021162.1 mouse_genomes_project 15 65917993 66042261 - MGP_CASTEiJ_P0040858 Lrrc6 protein_coding protein_coding MGP_CASTEiJ_T0042492.1 MGP_CASTEiJ_G0021640.1 mouse_genomes_project 15 103531701 103542297 - MGP_CASTEiJ_P0042492 Krt75 protein_coding protein_coding MGP_CASTEiJ_T0012733.1 MGP_CASTEiJ_G0010896.1 mouse_genomes_project 15 92755196 92758273 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040984.1 MGP_CASTEiJ_G0021198.1 mouse_genomes_project 15 74774645 74780874 - MGP_CASTEiJ_P0040984 Gml2 protein_coding protein_coding MGP_CASTEiJ_T0040985.1 MGP_CASTEiJ_G0021198.1 mouse_genomes_project 15 74774647 74782166 - MGP_CASTEiJ_P0040985 Gml2 protein_coding protein_coding MGP_CASTEiJ_T0040989.1 MGP_CASTEiJ_G0021198.1 mouse_genomes_project 15 74776159 74782164 - MGP_CASTEiJ_P0040989 Gml2 protein_coding protein_coding MGP_CASTEiJ_T0012716.1 MGP_CASTEiJ_G0010879.1 mouse_genomes_project 15 76074208 76075484 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040520.1 MGP_CASTEiJ_G0021040.1 mouse_genomes_project 15 32804321 32838812 + MGP_CASTEiJ_P0040520 Pop1 protein_coding protein_coding MGP_CASTEiJ_T0040521.1 MGP_CASTEiJ_G0021040.1 mouse_genomes_project 15 32804340 32838801 + MGP_CASTEiJ_P0040521 Pop1 protein_coding protein_coding MGP_CASTEiJ_T0040522.1 MGP_CASTEiJ_G0021040.1 mouse_genomes_project 15 32820372 32822658 + Pop1 protein_coding retained_intron MGP_CASTEiJ_T0040523.1 MGP_CASTEiJ_G0021040.1 mouse_genomes_project 15 32824635 32828477 + Pop1 protein_coding processed_transcript MGP_CASTEiJ_T0040524.1 MGP_CASTEiJ_G0021040.1 mouse_genomes_project 15 32826248 32837325 + Pop1 protein_coding retained_intron MGP_CASTEiJ_T0040525.1 MGP_CASTEiJ_G0021040.1 mouse_genomes_project 15 32834320 32837395 + Pop1 protein_coding retained_intron MGP_CASTEiJ_T0040263.1 MGP_CASTEiJ_G0020962.1 mouse_genomes_project 15 4782756 4815815 + MGP_CASTEiJ_P0040263 Gdnf protein_coding protein_coding MGP_CASTEiJ_T0041154.1 MGP_CASTEiJ_G0021243.1 mouse_genomes_project 15 76473529 76475941 + MGP_CASTEiJ_P0041154 Cyc1 protein_coding protein_coding MGP_CASTEiJ_T0042508.1 MGP_CASTEiJ_G0021655.1 mouse_genomes_project 15 104041876 104045671 + MGP_CASTEiJ_P0042508 Krt18 protein_coding protein_coding MGP_CASTEiJ_T0012689.1 MGP_CASTEiJ_G0010852.1 mouse_genomes_project 15 26189378 26189453 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099442.1 MGP_CASTEiJ_G0036355.1 mouse_genomes_project 15 58074741 58074897 - Gm24041 snRNA snRNA MGP_CASTEiJ_T0040943.1 MGP_CASTEiJ_G0021183.1 mouse_genomes_project 15 73651149 73730335 - MGP_CASTEiJ_P0040943 Mroh5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040944.1 MGP_CASTEiJ_G0021183.1 mouse_genomes_project 15 73674597 73677173 - Mroh5 protein_coding processed_transcript MGP_CASTEiJ_T0040945.1 MGP_CASTEiJ_G0021183.1 mouse_genomes_project 15 73679557 73738835 - MGP_CASTEiJ_P0040945 Mroh5 protein_coding protein_coding MGP_CASTEiJ_T0040946.1 MGP_CASTEiJ_G0021183.1 mouse_genomes_project 15 73680081 73716860 - MGP_CASTEiJ_P0040946 Mroh5 protein_coding protein_coding MGP_CASTEiJ_T0040947.1 MGP_CASTEiJ_G0021183.1 mouse_genomes_project 15 73692020 73738863 - Mroh5 protein_coding retained_intron MGP_CASTEiJ_T0042484.1 MGP_CASTEiJ_G0021633.1 mouse_genomes_project 15 103383218 103388737 - MGP_CASTEiJ_P0042484 Krt87 protein_coding protein_coding MGP_CASTEiJ_T0042373.1 MGP_CASTEiJ_G0021602.1 mouse_genomes_project 15 101740770 101801090 + MGP_CASTEiJ_P0042373 Larp4 protein_coding protein_coding MGP_CASTEiJ_T0042374.1 MGP_CASTEiJ_G0021602.1 mouse_genomes_project 15 101744408 101801090 + MGP_CASTEiJ_P0042374 Larp4 protein_coding protein_coding MGP_CASTEiJ_T0006638.1 MGP_CASTEiJ_G0005487.1 mouse_genomes_project 15 104516529 104547508 - Gm26518 lincRNA lincRNA MGP_CASTEiJ_T0042392.1 MGP_CASTEiJ_G0021608.1 mouse_genomes_project 15 102136917 102146070 + MGP_CASTEiJ_P0042392 protein_coding protein_coding MGP_CASTEiJ_T0042394.1 MGP_CASTEiJ_G0021608.1 mouse_genomes_project 15 102136952 102149114 + MGP_CASTEiJ_P0042394 protein_coding protein_coding MGP_CASTEiJ_T0040643.1 MGP_CASTEiJ_G0021083.1 mouse_genomes_project 15 41876067 41908815 - MGP_CASTEiJ_P0040643 Eif3e protein_coding protein_coding MGP_CASTEiJ_T0040644.1 MGP_CASTEiJ_G0021083.1 mouse_genomes_project 15 41886815 41908823 - MGP_CASTEiJ_P0040644 Eif3e protein_coding unknown_likely_coding MGP_CASTEiJ_T0041827.1 MGP_CASTEiJ_G0021435.1 mouse_genomes_project 15 85173450 85246609 - MGP_CASTEiJ_P0041827 1810041L15Rik protein_coding protein_coding MGP_CASTEiJ_T0041828.1 MGP_CASTEiJ_G0021435.1 mouse_genomes_project 15 85174301 85245931 - MGP_CASTEiJ_P0041828 1810041L15Rik protein_coding protein_coding MGP_CASTEiJ_T0041829.1 MGP_CASTEiJ_G0021435.1 mouse_genomes_project 15 85203204 85245995 - MGP_CASTEiJ_P0041829 1810041L15Rik protein_coding protein_coding MGP_CASTEiJ_T0041830.1 MGP_CASTEiJ_G0021435.1 mouse_genomes_project 15 85214051 85241741 - MGP_CASTEiJ_P0041830 1810041L15Rik protein_coding protein_coding MGP_CASTEiJ_T0009761.1 MGP_CASTEiJ_G0007949.1 mouse_genomes_project 15 2783140 2783254 + Gm27760 miRNA miRNA MGP_CASTEiJ_T0040901.1 MGP_CASTEiJ_G0021172.1 mouse_genomes_project 15 71179960 71451064 - MGP_CASTEiJ_P0040901 Fam135b protein_coding protein_coding MGP_CASTEiJ_T0099455.1 MGP_CASTEiJ_G0036368.1 mouse_genomes_project 15 80493835 80493942 - Gm24204 snRNA snRNA MGP_CASTEiJ_T0041559.1 MGP_CASTEiJ_G0021354.1 mouse_genomes_project 15 80587327 80633164 + MGP_CASTEiJ_P0041559 Mgat3 protein_coding protein_coding MGP_CASTEiJ_T0040780.1 MGP_CASTEiJ_G0021136.1 mouse_genomes_project 15 58150452 58165029 + MGP_CASTEiJ_P0040780 Rnf139 protein_coding protein_coding MGP_CASTEiJ_T0040534.1 MGP_CASTEiJ_G0021045.1 mouse_genomes_project 15 33716696 34296407 + MGP_CASTEiJ_P0040534 Vps13b protein_coding protein_coding MGP_CASTEiJ_T0040507.1 MGP_CASTEiJ_G0021036.1 mouse_genomes_project 15 32642023 32650832 - MGP_CASTEiJ_P0040507 9430069I07Rik protein_coding protein_coding MGP_CASTEiJ_T0099441.1 MGP_CASTEiJ_G0036354.1 mouse_genomes_project 15 57346755 57346817 - Gm23475 snRNA snRNA MGP_CASTEiJ_T0098841.1 MGP_CASTEiJ_G0035768.1 mouse_genomes_project 15 72606130 72612816 - Peg13 sense_intronic sense_intronic MGP_CASTEiJ_T0041378.1 MGP_CASTEiJ_G0021309.1 mouse_genomes_project 15 78968654 79017787 - MGP_CASTEiJ_P0041378 Elfn2 protein_coding protein_coding MGP_CASTEiJ_T0099459.1 MGP_CASTEiJ_G0036372.1 mouse_genomes_project 15 86194414 86194606 - Gm23517 snRNA snRNA MGP_CASTEiJ_T0102091.1 MGP_CASTEiJ_G0038816.1 mouse_genomes_project 15 75353843 75354072 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0042473.1 MGP_CASTEiJ_G0021627.1 mouse_genomes_project 15 103097911 103137181 + MGP_CASTEiJ_P0042473 Acvr1b protein_coding protein_coding MGP_CASTEiJ_T0040973.1 MGP_CASTEiJ_G0021192.1 mouse_genomes_project 15 74672847 74674970 - MGP_CASTEiJ_P0040973 Lypd2 protein_coding protein_coding MGP_CASTEiJ_T0040974.1 MGP_CASTEiJ_G0021192.1 mouse_genomes_project 15 74673407 74674958 - Lypd2 protein_coding retained_intron MGP_CASTEiJ_T0041563.1 MGP_CASTEiJ_G0021357.1 mouse_genomes_project 15 80676012 80679710 - MGP_CASTEiJ_P0041563 Rps19bp1 protein_coding protein_coding MGP_CASTEiJ_T0040561.1 MGP_CASTEiJ_G0021055.1 mouse_genomes_project 15 35018840 35019234 - MGP_CASTEiJ_P0040561 Gm8186 protein_coding protein_coding MGP_CASTEiJ_T0041489.1 MGP_CASTEiJ_G0021337.1 mouse_genomes_project 15 79939749 79986214 - MGP_CASTEiJ_P0041489 Dmc1 protein_coding protein_coding MGP_CASTEiJ_T0042264.1 MGP_CASTEiJ_G0021562.1 mouse_genomes_project 15 100311872 100324894 - MGP_CASTEiJ_P0042264 Rnd1 protein_coding protein_coding MGP_CASTEiJ_T0042265.1 MGP_CASTEiJ_G0021562.1 mouse_genomes_project 15 100319807 100324892 - MGP_CASTEiJ_P0042265 Rnd1 protein_coding protein_coding MGP_CASTEiJ_T0099452.1 MGP_CASTEiJ_G0036365.1 mouse_genomes_project 15 76339126 76339233 - Gm25720 snRNA snRNA MGP_CASTEiJ_T0040742.1 MGP_CASTEiJ_G0021121.1 mouse_genomes_project 15 57091305 57154232 + MGP_CASTEiJ_P0040742 Tbc1d31 protein_coding protein_coding MGP_CASTEiJ_T0040743.1 MGP_CASTEiJ_G0021121.1 mouse_genomes_project 15 57091340 57140908 + Tbc1d31 protein_coding processed_transcript MGP_CASTEiJ_T0040744.1 MGP_CASTEiJ_G0021121.1 mouse_genomes_project 15 57091345 57099622 + MGP_CASTEiJ_P0040744 Tbc1d31 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040745.1 MGP_CASTEiJ_G0021121.1 mouse_genomes_project 15 57092108 57140988 + Tbc1d31 protein_coding retained_intron MGP_CASTEiJ_T0040746.1 MGP_CASTEiJ_G0021121.1 mouse_genomes_project 15 57093534 57135356 + Tbc1d31 protein_coding retained_intron MGP_CASTEiJ_T0040747.1 MGP_CASTEiJ_G0021121.1 mouse_genomes_project 15 57095679 57136699 + Tbc1d31 protein_coding retained_intron MGP_CASTEiJ_T0040748.1 MGP_CASTEiJ_G0021121.1 mouse_genomes_project 15 57139830 57154238 + MGP_CASTEiJ_P0040748 Tbc1d31 protein_coding protein_coding MGP_CASTEiJ_T0099456.1 MGP_CASTEiJ_G0036369.1 mouse_genomes_project 15 81517494 81517644 + Gm25131 snRNA snRNA MGP_CASTEiJ_T0041013.1 MGP_CASTEiJ_G0021207.1 mouse_genomes_project 15 75130139 75132130 + MGP_CASTEiJ_P0041013 protein_coding protein_coding MGP_CASTEiJ_T0040571.1 MGP_CASTEiJ_G0021059.1 mouse_genomes_project 15 35649298 35787278 + MGP_CASTEiJ_P0040571 Grhl2 protein_coding protein_coding MGP_CASTEiJ_T0040572.1 MGP_CASTEiJ_G0021059.1 mouse_genomes_project 15 35649298 35760375 + MGP_CASTEiJ_P0040572 Grhl2 protein_coding protein_coding MGP_CASTEiJ_T0040573.1 MGP_CASTEiJ_G0021059.1 mouse_genomes_project 15 35649320 35702177 + MGP_CASTEiJ_P0040573 Grhl2 protein_coding protein_coding MGP_CASTEiJ_T0040574.1 MGP_CASTEiJ_G0021059.1 mouse_genomes_project 15 35742798 35787271 + Grhl2 protein_coding processed_transcript MGP_CASTEiJ_T0040575.1 MGP_CASTEiJ_G0021059.1 mouse_genomes_project 15 35762400 35784656 + MGP_CASTEiJ_P0040575 Grhl2 protein_coding protein_coding MGP_CASTEiJ_T0040188.1 MGP_CASTEiJ_G0020943.1 mouse_genomes_project 15 866417 880149 - MGP_CASTEiJ_P0040188 AW549877 protein_coding protein_coding MGP_CASTEiJ_T0042151.1 MGP_CASTEiJ_G0021531.1 mouse_genomes_project 15 98785641 98788856 - MGP_CASTEiJ_P0042151 Amigo2 protein_coding protein_coding MGP_CASTEiJ_T0042340.1 MGP_CASTEiJ_G0021592.1 mouse_genomes_project 15 101338880 101342659 + MGP_CASTEiJ_P0042340 Aqp5 protein_coding protein_coding MGP_CASTEiJ_T0042341.1 MGP_CASTEiJ_G0021592.1 mouse_genomes_project 15 101339059 101342880 + MGP_CASTEiJ_P0042341 Aqp5 protein_coding protein_coding MGP_CASTEiJ_T0041319.1 MGP_CASTEiJ_G0021288.1 mouse_genomes_project 15 77878675 77891115 - MGP_CASTEiJ_P0041319 Apol10b protein_coding protein_coding MGP_CASTEiJ_T0041782.1 MGP_CASTEiJ_G0021422.1 mouse_genomes_project 15 84242056 84260109 + MGP_CASTEiJ_P0041782 Bik protein_coding protein_coding MGP_CASTEiJ_T0041720.1 MGP_CASTEiJ_G0021399.1 mouse_genomes_project 15 82932663 82943392 - MGP_CASTEiJ_P0041720 Naga protein_coding protein_coding MGP_CASTEiJ_T0099470.1 MGP_CASTEiJ_G0036383.1 mouse_genomes_project 15 104427609 104427713 + Gm23590 snRNA snRNA MGP_CASTEiJ_T0012737.1 MGP_CASTEiJ_G0010900.1 mouse_genomes_project 15 100952504 100959829 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0041026.1 MGP_CASTEiJ_G0021212.1 mouse_genomes_project 15 75675449 75679783 + MGP_CASTEiJ_P0041026 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041027.1 MGP_CASTEiJ_G0021212.1 mouse_genomes_project 15 75676977 75678561 + MGP_CASTEiJ_P0041027 protein_coding protein_coding MGP_CASTEiJ_T0041028.1 MGP_CASTEiJ_G0021212.1 mouse_genomes_project 15 75677003 75679829 + MGP_CASTEiJ_P0041028 protein_coding protein_coding MGP_CASTEiJ_T0041029.1 MGP_CASTEiJ_G0021212.1 mouse_genomes_project 15 75677017 75678536 + protein_coding retained_intron MGP_CASTEiJ_T0041030.1 MGP_CASTEiJ_G0021212.1 mouse_genomes_project 15 75677017 75678292 + protein_coding retained_intron MGP_CASTEiJ_T0042474.1 MGP_CASTEiJ_G0021628.1 mouse_genomes_project 15 103147662 103157296 + MGP_CASTEiJ_P0042474 Grasp protein_coding protein_coding MGP_CASTEiJ_T0041992.1 MGP_CASTEiJ_G0021485.1 mouse_genomes_project 15 90433759 90450966 + MGP_CASTEiJ_P0041992 Ncaph2 protein_coding protein_coding MGP_CASTEiJ_T0041993.1 MGP_CASTEiJ_G0021485.1 mouse_genomes_project 15 90433776 90450966 + MGP_CASTEiJ_P0041993 Ncaph2 protein_coding protein_coding MGP_CASTEiJ_T0041994.1 MGP_CASTEiJ_G0021485.1 mouse_genomes_project 15 90433776 90450966 + MGP_CASTEiJ_P0041994 Ncaph2 protein_coding protein_coding MGP_CASTEiJ_T0041995.1 MGP_CASTEiJ_G0021485.1 mouse_genomes_project 15 90433799 90449728 + MGP_CASTEiJ_P0041995 Ncaph2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041996.1 MGP_CASTEiJ_G0021485.1 mouse_genomes_project 15 90433803 90450966 + MGP_CASTEiJ_P0041996 Ncaph2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041997.1 MGP_CASTEiJ_G0021485.1 mouse_genomes_project 15 90433845 90442020 + Ncaph2 protein_coding retained_intron MGP_CASTEiJ_T0041998.1 MGP_CASTEiJ_G0021485.1 mouse_genomes_project 15 90433861 90442044 + Ncaph2 protein_coding retained_intron MGP_CASTEiJ_T0041999.1 MGP_CASTEiJ_G0021485.1 mouse_genomes_project 15 90433954 90443471 + Ncaph2 protein_coding retained_intron MGP_CASTEiJ_T0042000.1 MGP_CASTEiJ_G0021485.1 mouse_genomes_project 15 90447831 90448815 + Ncaph2 protein_coding retained_intron MGP_CASTEiJ_T0042001.1 MGP_CASTEiJ_G0021485.1 mouse_genomes_project 15 90448017 90449380 + Ncaph2 protein_coding retained_intron MGP_CASTEiJ_T0042002.1 MGP_CASTEiJ_G0021485.1 mouse_genomes_project 15 90448172 90449329 + Ncaph2 protein_coding retained_intron MGP_CASTEiJ_T0042003.1 MGP_CASTEiJ_G0021485.1 mouse_genomes_project 15 90448437 90449072 + Ncaph2 protein_coding retained_intron MGP_CASTEiJ_T0042004.1 MGP_CASTEiJ_G0021485.1 mouse_genomes_project 15 90448786 90449664 + Ncaph2 protein_coding retained_intron MGP_CASTEiJ_T0042005.1 MGP_CASTEiJ_G0021485.1 mouse_genomes_project 15 90448892 90449703 + Ncaph2 protein_coding retained_intron MGP_CASTEiJ_T0042097.1 MGP_CASTEiJ_G0021511.1 mouse_genomes_project 15 94573507 94636409 - MGP_CASTEiJ_P0042097 Yaf2 protein_coding protein_coding MGP_CASTEiJ_T0042098.1 MGP_CASTEiJ_G0021511.1 mouse_genomes_project 15 94573510 94636536 - Yaf2 protein_coding processed_transcript MGP_CASTEiJ_T0040527.1 MGP_CASTEiJ_G0021042.1 mouse_genomes_project 15 33161226 33166182 + MGP_CASTEiJ_P0040527 Kcns2 protein_coding protein_coding MGP_CASTEiJ_T0040528.1 MGP_CASTEiJ_G0021042.1 mouse_genomes_project 15 33161628 33199351 + MGP_CASTEiJ_P0040528 Kcns2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042323.1 MGP_CASTEiJ_G0021586.1 mouse_genomes_project 15 101120838 101137839 + MGP_CASTEiJ_P0042323 Tmbim6 protein_coding protein_coding MGP_CASTEiJ_T0042324.1 MGP_CASTEiJ_G0021586.1 mouse_genomes_project 15 101120942 101136326 + MGP_CASTEiJ_P0042324 Tmbim6 protein_coding protein_coding MGP_CASTEiJ_T0042325.1 MGP_CASTEiJ_G0021586.1 mouse_genomes_project 15 101120942 101136424 + MGP_CASTEiJ_P0042325 Tmbim6 protein_coding protein_coding MGP_CASTEiJ_T0042326.1 MGP_CASTEiJ_G0021586.1 mouse_genomes_project 15 101120978 101136281 + MGP_CASTEiJ_P0042326 Tmbim6 protein_coding protein_coding MGP_CASTEiJ_T0042327.1 MGP_CASTEiJ_G0021586.1 mouse_genomes_project 15 101121175 101136325 + MGP_CASTEiJ_P0042327 Tmbim6 protein_coding protein_coding MGP_CASTEiJ_T0042328.1 MGP_CASTEiJ_G0021586.1 mouse_genomes_project 15 101121549 101134468 + MGP_CASTEiJ_P0042328 Tmbim6 protein_coding protein_coding MGP_CASTEiJ_T0042329.1 MGP_CASTEiJ_G0021586.1 mouse_genomes_project 15 101121567 101136400 + MGP_CASTEiJ_P0042329 Tmbim6 protein_coding protein_coding MGP_CASTEiJ_T0042330.1 MGP_CASTEiJ_G0021586.1 mouse_genomes_project 15 101128848 101129866 + MGP_CASTEiJ_P0042330 Tmbim6 protein_coding protein_coding MGP_CASTEiJ_T0042331.1 MGP_CASTEiJ_G0021586.1 mouse_genomes_project 15 101133664 101136581 + Tmbim6 protein_coding retained_intron MGP_CASTEiJ_T0009791.1 MGP_CASTEiJ_G0007979.1 mouse_genomes_project 15 76570301 76570361 + Mir6954 miRNA miRNA MGP_CASTEiJ_T0040758.1 MGP_CASTEiJ_G0021125.1 mouse_genomes_project 15 57234234 57270333 - MGP_CASTEiJ_P0040758 Zhx1 protein_coding protein_coding MGP_CASTEiJ_T0040759.1 MGP_CASTEiJ_G0021125.1 mouse_genomes_project 15 57234234 57270577 - MGP_CASTEiJ_P0040759 Zhx1 protein_coding protein_coding MGP_CASTEiJ_T0040760.1 MGP_CASTEiJ_G0021125.1 mouse_genomes_project 15 57234536 57270557 - MGP_CASTEiJ_P0040760 Zhx1 protein_coding protein_coding MGP_CASTEiJ_T0040763.1 MGP_CASTEiJ_G0021125.1 mouse_genomes_project 15 57240200 57270302 - MGP_CASTEiJ_P0040763 Zhx1 protein_coding protein_coding MGP_CASTEiJ_T0040764.1 MGP_CASTEiJ_G0021125.1 mouse_genomes_project 15 57242134 57270451 - Zhx1 protein_coding retained_intron MGP_CASTEiJ_T0040765.1 MGP_CASTEiJ_G0021125.1 mouse_genomes_project 15 57260657 57270629 - Zhx1 protein_coding retained_intron MGP_CASTEiJ_T0006589.1 MGP_CASTEiJ_G0005457.1 mouse_genomes_project 15 45336458 45336776 + lincRNA lincRNA MGP_CASTEiJ_T0042013.1 MGP_CASTEiJ_G0021491.1 mouse_genomes_project 15 90502658 90520186 - Chkb protein_coding retained_intron MGP_CASTEiJ_T0042018.1 MGP_CASTEiJ_G0021491.1 mouse_genomes_project 15 90516850 90517651 - Chkb protein_coding processed_transcript MGP_CASTEiJ_T0042019.1 MGP_CASTEiJ_G0021491.1 mouse_genomes_project 15 90516850 90520350 - Chkb protein_coding retained_intron MGP_CASTEiJ_T0042020.1 MGP_CASTEiJ_G0021491.1 mouse_genomes_project 15 90516857 90519929 - Chkb protein_coding retained_intron MGP_CASTEiJ_T0042021.1 MGP_CASTEiJ_G0021491.1 mouse_genomes_project 15 90516857 90520389 - MGP_CASTEiJ_P0042021 Chkb protein_coding protein_coding MGP_CASTEiJ_T0042022.1 MGP_CASTEiJ_G0021491.1 mouse_genomes_project 15 90516931 90518983 - MGP_CASTEiJ_P0042022 Chkb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042023.1 MGP_CASTEiJ_G0021491.1 mouse_genomes_project 15 90516958 90517649 - Chkb protein_coding retained_intron MGP_CASTEiJ_T0042024.1 MGP_CASTEiJ_G0021491.1 mouse_genomes_project 15 90517604 90520398 - Chkb protein_coding retained_intron MGP_CASTEiJ_T0042025.1 MGP_CASTEiJ_G0021491.1 mouse_genomes_project 15 90517869 90519920 - Chkb protein_coding retained_intron MGP_CASTEiJ_T0042026.1 MGP_CASTEiJ_G0021491.1 mouse_genomes_project 15 90518124 90519583 - MGP_CASTEiJ_P0042026 Chkb protein_coding protein_coding MGP_CASTEiJ_T0006604.1 MGP_CASTEiJ_G0005463.1 mouse_genomes_project 15 77251231 77263099 + 1700109K24Rik lincRNA lincRNA MGP_CASTEiJ_T0009781.1 MGP_CASTEiJ_G0007969.1 mouse_genomes_project 15 52635393 52635468 - Mir28c miRNA miRNA MGP_CASTEiJ_T0009782.1 MGP_CASTEiJ_G0007970.1 mouse_genomes_project 15 62058341 62058411 - Gm24810 miRNA miRNA MGP_CASTEiJ_T0041971.1 MGP_CASTEiJ_G0021481.1 mouse_genomes_project 15 90358091 90386714 - MGP_CASTEiJ_P0041971 Sbf1 protein_coding protein_coding MGP_CASTEiJ_T0041972.1 MGP_CASTEiJ_G0021481.1 mouse_genomes_project 15 90358135 90386658 - MGP_CASTEiJ_P0041972 Sbf1 protein_coding protein_coding MGP_CASTEiJ_T0041973.1 MGP_CASTEiJ_G0021481.1 mouse_genomes_project 15 90358138 90386674 - MGP_CASTEiJ_P0041973 Sbf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041974.1 MGP_CASTEiJ_G0021481.1 mouse_genomes_project 15 90358139 90364121 - MGP_CASTEiJ_P0041974 Sbf1 protein_coding protein_coding MGP_CASTEiJ_T0041975.1 MGP_CASTEiJ_G0021481.1 mouse_genomes_project 15 90358408 90358811 - Sbf1 protein_coding retained_intron MGP_CASTEiJ_T0041976.1 MGP_CASTEiJ_G0021481.1 mouse_genomes_project 15 90359588 90363634 - Sbf1 protein_coding retained_intron MGP_CASTEiJ_T0041977.1 MGP_CASTEiJ_G0021481.1 mouse_genomes_project 15 90363824 90365475 - Sbf1 protein_coding retained_intron MGP_CASTEiJ_T0041978.1 MGP_CASTEiJ_G0021481.1 mouse_genomes_project 15 90371159 90371903 - Sbf1 protein_coding retained_intron MGP_CASTEiJ_T0041979.1 MGP_CASTEiJ_G0021481.1 mouse_genomes_project 15 90371997 90374073 - Sbf1 protein_coding retained_intron MGP_CASTEiJ_T0041980.1 MGP_CASTEiJ_G0021481.1 mouse_genomes_project 15 90373725 90374777 - MGP_CASTEiJ_P0041980 Sbf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041981.1 MGP_CASTEiJ_G0021481.1 mouse_genomes_project 15 90374535 90376538 - Sbf1 protein_coding retained_intron MGP_CASTEiJ_T0041982.1 MGP_CASTEiJ_G0021481.1 mouse_genomes_project 15 90376330 90378060 - Sbf1 protein_coding retained_intron MGP_CASTEiJ_T0041983.1 MGP_CASTEiJ_G0021481.1 mouse_genomes_project 15 90377453 90379243 - MGP_CASTEiJ_P0041983 Sbf1 protein_coding protein_coding MGP_CASTEiJ_T0009800.1 MGP_CASTEiJ_G0007988.1 mouse_genomes_project 15 81407636 81407718 + Mir5113 miRNA miRNA MGP_CASTEiJ_T0003482.1 MGP_CASTEiJ_G0003165.1 mouse_genomes_project 15 35790916 35792212 + Gm28221 antisense antisense MGP_CASTEiJ_T0041872.1 MGP_CASTEiJ_G0021453.1 mouse_genomes_project 15 86699171 86706235 - MGP_CASTEiJ_P0041872 Pkdrej protein_coding protein_coding MGP_CASTEiJ_T0012719.1 MGP_CASTEiJ_G0010882.1 mouse_genomes_project 15 77741275 77741839 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040807.1 MGP_CASTEiJ_G0021149.1 mouse_genomes_project 15 63240780 63296870 - MGP_CASTEiJ_P0040807 protein_coding protein_coding MGP_CASTEiJ_T0041031.1 MGP_CASTEiJ_G0021213.1 mouse_genomes_project 15 75696974 75705554 + MGP_CASTEiJ_P0041031 Zfp41 protein_coding protein_coding MGP_CASTEiJ_T0041032.1 MGP_CASTEiJ_G0021213.1 mouse_genomes_project 15 75696979 75705547 + MGP_CASTEiJ_P0041032 Zfp41 protein_coding protein_coding MGP_CASTEiJ_T0041033.1 MGP_CASTEiJ_G0021213.1 mouse_genomes_project 15 75697021 75698932 + MGP_CASTEiJ_P0041033 Zfp41 protein_coding protein_coding MGP_CASTEiJ_T0041034.1 MGP_CASTEiJ_G0021213.1 mouse_genomes_project 15 75701994 75704084 + Zfp41 protein_coding processed_transcript MGP_CASTEiJ_T0009832.1 MGP_CASTEiJ_G0008020.1 mouse_genomes_project 15 105116507 105116599 + Mir615 miRNA miRNA MGP_CASTEiJ_T0041353.1 MGP_CASTEiJ_G0021299.1 mouse_genomes_project 15 78658238 78668362 - MGP_CASTEiJ_P0041353 Tex33 protein_coding protein_coding MGP_CASTEiJ_T0041354.1 MGP_CASTEiJ_G0021299.1 mouse_genomes_project 15 78658238 78675515 - MGP_CASTEiJ_P0041354 Tex33 protein_coding protein_coding MGP_CASTEiJ_T0041355.1 MGP_CASTEiJ_G0021299.1 mouse_genomes_project 15 78658238 78675515 - MGP_CASTEiJ_P0041355 Tex33 protein_coding protein_coding MGP_CASTEiJ_T0099458.1 MGP_CASTEiJ_G0036371.1 mouse_genomes_project 15 83965228 83965379 + Rnu12 snRNA snRNA MGP_CASTEiJ_T0042303.1 MGP_CASTEiJ_G0021584.1 mouse_genomes_project 15 101015048 101025928 + MGP_CASTEiJ_P0042303 Prpf40b protein_coding protein_coding MGP_CASTEiJ_T0042304.1 MGP_CASTEiJ_G0021584.1 mouse_genomes_project 15 101015200 101036986 + Prpf40b protein_coding retained_intron MGP_CASTEiJ_T0042305.1 MGP_CASTEiJ_G0021584.1 mouse_genomes_project 15 101015202 101036082 + Prpf40b protein_coding retained_intron MGP_CASTEiJ_T0042306.1 MGP_CASTEiJ_G0021584.1 mouse_genomes_project 15 101015202 101036082 + Prpf40b protein_coding retained_intron MGP_CASTEiJ_T0042307.1 MGP_CASTEiJ_G0021584.1 mouse_genomes_project 15 101015205 101027040 + MGP_CASTEiJ_P0042307 Prpf40b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042308.1 MGP_CASTEiJ_G0021584.1 mouse_genomes_project 15 101015232 101036986 + MGP_CASTEiJ_P0042308 Prpf40b protein_coding protein_coding MGP_CASTEiJ_T0042309.1 MGP_CASTEiJ_G0021584.1 mouse_genomes_project 15 101015857 101036978 + MGP_CASTEiJ_P0042309 Prpf40b protein_coding protein_coding MGP_CASTEiJ_T0042310.1 MGP_CASTEiJ_G0021584.1 mouse_genomes_project 15 101023242 101036467 + MGP_CASTEiJ_P0042310 Prpf40b protein_coding protein_coding MGP_CASTEiJ_T0042311.1 MGP_CASTEiJ_G0021584.1 mouse_genomes_project 15 101023243 101036975 + MGP_CASTEiJ_P0042311 Prpf40b protein_coding protein_coding MGP_CASTEiJ_T0042312.1 MGP_CASTEiJ_G0021584.1 mouse_genomes_project 15 101027847 101035061 + Prpf40b protein_coding retained_intron MGP_CASTEiJ_T0042313.1 MGP_CASTEiJ_G0021584.1 mouse_genomes_project 15 101029866 101035858 + Prpf40b protein_coding retained_intron MGP_CASTEiJ_T0042314.1 MGP_CASTEiJ_G0021584.1 mouse_genomes_project 15 101034835 101035762 + Prpf40b protein_coding retained_intron MGP_CASTEiJ_T0042315.1 MGP_CASTEiJ_G0021584.1 mouse_genomes_project 15 101034844 101036639 + MGP_CASTEiJ_P0042315 Prpf40b protein_coding protein_coding MGP_CASTEiJ_T0042316.1 MGP_CASTEiJ_G0021584.1 mouse_genomes_project 15 101034873 101036781 + MGP_CASTEiJ_P0042316 Prpf40b protein_coding protein_coding MGP_CASTEiJ_T0042317.1 MGP_CASTEiJ_G0021584.1 mouse_genomes_project 15 101035507 101036978 + MGP_CASTEiJ_P0042317 Prpf40b protein_coding protein_coding MGP_CASTEiJ_T0040266.1 MGP_CASTEiJ_G0020964.1 mouse_genomes_project 15 5075428 5131605 + MGP_CASTEiJ_P0040266 Nup155 protein_coding protein_coding MGP_CASTEiJ_T0040783.1 MGP_CASTEiJ_G0021138.1 mouse_genomes_project 15 58195178 58200856 + MGP_CASTEiJ_P0040783 Ndufb9 protein_coding protein_coding MGP_CASTEiJ_T0040300.1 MGP_CASTEiJ_G0020972.1 mouse_genomes_project 15 6304650 6351833 + MGP_CASTEiJ_P0040300 protein_coding protein_coding MGP_CASTEiJ_T0040301.1 MGP_CASTEiJ_G0020972.1 mouse_genomes_project 15 6304669 6450546 + protein_coding processed_transcript MGP_CASTEiJ_T0040302.1 MGP_CASTEiJ_G0020972.1 mouse_genomes_project 15 6304671 6450468 + protein_coding processed_transcript MGP_CASTEiJ_T0040303.1 MGP_CASTEiJ_G0020972.1 mouse_genomes_project 15 6308320 6317598 + MGP_CASTEiJ_P0040303 protein_coding protein_coding MGP_CASTEiJ_T0041165.1 MGP_CASTEiJ_G0021245.1 mouse_genomes_project 15 76481299 76484371 + MGP_CASTEiJ_P0041165 Maf1 protein_coding protein_coding MGP_CASTEiJ_T0041166.1 MGP_CASTEiJ_G0021245.1 mouse_genomes_project 15 76481299 76484372 + MGP_CASTEiJ_P0041166 Maf1 protein_coding protein_coding MGP_CASTEiJ_T0041167.1 MGP_CASTEiJ_G0021245.1 mouse_genomes_project 15 76481311 76484372 + MGP_CASTEiJ_P0041167 Maf1 protein_coding protein_coding MGP_CASTEiJ_T0041168.1 MGP_CASTEiJ_G0021245.1 mouse_genomes_project 15 76481314 76483005 + Maf1 protein_coding retained_intron MGP_CASTEiJ_T0041169.1 MGP_CASTEiJ_G0021245.1 mouse_genomes_project 15 76481332 76482446 + Maf1 protein_coding processed_transcript MGP_CASTEiJ_T0041170.1 MGP_CASTEiJ_G0021245.1 mouse_genomes_project 15 76481332 76484379 + MGP_CASTEiJ_P0041170 Maf1 protein_coding protein_coding MGP_CASTEiJ_T0041171.1 MGP_CASTEiJ_G0021245.1 mouse_genomes_project 15 76481358 76482066 + Maf1 protein_coding retained_intron MGP_CASTEiJ_T0041172.1 MGP_CASTEiJ_G0021245.1 mouse_genomes_project 15 76481414 76482898 + Maf1 protein_coding retained_intron MGP_CASTEiJ_T0041173.1 MGP_CASTEiJ_G0021245.1 mouse_genomes_project 15 76482004 76483185 + MGP_CASTEiJ_P0041173 Maf1 protein_coding protein_coding MGP_CASTEiJ_T0041174.1 MGP_CASTEiJ_G0021245.1 mouse_genomes_project 15 76482032 76482899 + Maf1 protein_coding retained_intron MGP_CASTEiJ_T0041175.1 MGP_CASTEiJ_G0021245.1 mouse_genomes_project 15 76482768 76483990 + Maf1 protein_coding retained_intron MGP_CASTEiJ_T0041176.1 MGP_CASTEiJ_G0021245.1 mouse_genomes_project 15 76482892 76484025 + Maf1 protein_coding retained_intron MGP_CASTEiJ_T0041177.1 MGP_CASTEiJ_G0021245.1 mouse_genomes_project 15 76483099 76484072 + Maf1 protein_coding retained_intron MGP_CASTEiJ_T0041178.1 MGP_CASTEiJ_G0021245.1 mouse_genomes_project 15 76483413 76484114 + MGP_CASTEiJ_P0041178 Maf1 protein_coding protein_coding MGP_CASTEiJ_T0040545.1 MGP_CASTEiJ_G0021048.1 mouse_genomes_project 15 34524131 34538698 - MGP_CASTEiJ_P0040545 Fbxo43 protein_coding protein_coding MGP_CASTEiJ_T0042574.1 MGP_CASTEiJ_G0021674.1 mouse_genomes_project 15 104533439 104567017 + MGP_CASTEiJ_P0042574 Pcbp2 protein_coding protein_coding MGP_CASTEiJ_T0042575.1 MGP_CASTEiJ_G0021674.1 mouse_genomes_project 15 104533439 104567017 + MGP_CASTEiJ_P0042575 Pcbp2 protein_coding protein_coding MGP_CASTEiJ_T0042576.1 MGP_CASTEiJ_G0021674.1 mouse_genomes_project 15 104533439 104567017 + MGP_CASTEiJ_P0042576 Pcbp2 protein_coding protein_coding MGP_CASTEiJ_T0041256.1 MGP_CASTEiJ_G0021265.1 mouse_genomes_project 15 76846280 76849240 + MGP_CASTEiJ_P0041256 Gpt protein_coding protein_coding MGP_CASTEiJ_T0040210.1 MGP_CASTEiJ_G0020952.1 mouse_genomes_project 15 2047195 2086798 + MGP_CASTEiJ_P0040210 Prkaa1 protein_coding protein_coding MGP_CASTEiJ_T0040467.1 MGP_CASTEiJ_G0021021.1 mouse_genomes_project 15 29551585 29552003 + MGP_CASTEiJ_P0040467 protein_coding protein_coding MGP_CASTEiJ_T0042642.1 MGP_CASTEiJ_G0021695.1 mouse_genomes_project 15 105369803 105377018 - MGP_CASTEiJ_P0042642 Nfe2 protein_coding protein_coding MGP_CASTEiJ_T0042643.1 MGP_CASTEiJ_G0021695.1 mouse_genomes_project 15 105369808 105373029 - MGP_CASTEiJ_P0042643 Nfe2 protein_coding protein_coding MGP_CASTEiJ_T0042644.1 MGP_CASTEiJ_G0021695.1 mouse_genomes_project 15 105369808 105373080 - MGP_CASTEiJ_P0042644 Nfe2 protein_coding protein_coding MGP_CASTEiJ_T0042645.1 MGP_CASTEiJ_G0021695.1 mouse_genomes_project 15 105369811 105373240 - MGP_CASTEiJ_P0042645 Nfe2 protein_coding protein_coding MGP_CASTEiJ_T0042646.1 MGP_CASTEiJ_G0021695.1 mouse_genomes_project 15 105369866 105373079 - MGP_CASTEiJ_P0042646 Nfe2 protein_coding protein_coding MGP_CASTEiJ_T0042647.1 MGP_CASTEiJ_G0021695.1 mouse_genomes_project 15 105370546 105374718 - MGP_CASTEiJ_P0042647 Nfe2 protein_coding protein_coding MGP_CASTEiJ_T0042648.1 MGP_CASTEiJ_G0021695.1 mouse_genomes_project 15 105370598 105375640 - MGP_CASTEiJ_P0042648 Nfe2 protein_coding protein_coding MGP_CASTEiJ_T0042649.1 MGP_CASTEiJ_G0021695.1 mouse_genomes_project 15 105370660 105373251 - MGP_CASTEiJ_P0042649 Nfe2 protein_coding protein_coding MGP_CASTEiJ_T0042650.1 MGP_CASTEiJ_G0021695.1 mouse_genomes_project 15 105370830 105374374 - MGP_CASTEiJ_P0042650 Nfe2 protein_coding protein_coding MGP_CASTEiJ_T0042651.1 MGP_CASTEiJ_G0021695.1 mouse_genomes_project 15 105370940 105379953 - MGP_CASTEiJ_P0042651 Nfe2 protein_coding protein_coding MGP_CASTEiJ_T0100678.1 MGP_CASTEiJ_G0037591.1 mouse_genomes_project 15 43577739 43577882 + Gm23343 snoRNA snoRNA MGP_CASTEiJ_T0042668.1 MGP_CASTEiJ_G0021704.1 mouse_genomes_project 15 105658341 105665874 - MGP_CASTEiJ_P0042668 Ppp1r1a protein_coding protein_coding MGP_CASTEiJ_T0003523.1 MGP_CASTEiJ_G0003197.1 mouse_genomes_project 15 101743795 101744913 - 2310068J16Rik antisense antisense MGP_CASTEiJ_T0040211.1 MGP_CASTEiJ_G0020953.1 mouse_genomes_project 15 2091232 2125876 + MGP_CASTEiJ_P0040211 Ttc33 protein_coding protein_coding MGP_CASTEiJ_T0040212.1 MGP_CASTEiJ_G0020953.1 mouse_genomes_project 15 2091267 2125876 + MGP_CASTEiJ_P0040212 Ttc33 protein_coding protein_coding MGP_CASTEiJ_T0040213.1 MGP_CASTEiJ_G0020953.1 mouse_genomes_project 15 2091436 2125876 + MGP_CASTEiJ_P0040213 Ttc33 protein_coding protein_coding MGP_CASTEiJ_T0040214.1 MGP_CASTEiJ_G0020953.1 mouse_genomes_project 15 2091860 2124749 + MGP_CASTEiJ_P0040214 Ttc33 protein_coding protein_coding MGP_CASTEiJ_T0040215.1 MGP_CASTEiJ_G0020953.1 mouse_genomes_project 15 2093055 2117996 + MGP_CASTEiJ_P0040215 Ttc33 protein_coding protein_coding MGP_CASTEiJ_T0099419.1 MGP_CASTEiJ_G0036332.1 mouse_genomes_project 15 520141 520267 - Gm22031 snRNA snRNA MGP_CASTEiJ_T0006610.1 MGP_CASTEiJ_G0005469.1 mouse_genomes_project 15 83632360 83639058 - Gm29019 lincRNA lincRNA MGP_CASTEiJ_T0006611.1 MGP_CASTEiJ_G0005469.1 mouse_genomes_project 15 83632417 83638940 - Gm29019 lincRNA lincRNA MGP_CASTEiJ_T0040173.1 MGP_CASTEiJ_G0020940.1 mouse_genomes_project 15 178185 203485 - MGP_CASTEiJ_P0040173 Ccdc152 protein_coding protein_coding MGP_CASTEiJ_T0099434.1 MGP_CASTEiJ_G0036347.1 mouse_genomes_project 15 45675003 45675065 - Gm23665 snRNA snRNA MGP_CASTEiJ_T0041897.1 MGP_CASTEiJ_G0021460.1 mouse_genomes_project 15 87147849 87428206 + MGP_CASTEiJ_P0041897 Tbc1d22a protein_coding protein_coding MGP_CASTEiJ_T0042367.1 MGP_CASTEiJ_G0021600.1 mouse_genomes_project 15 101540397 101588348 - MGP_CASTEiJ_P0042367 Lima1 protein_coding protein_coding MGP_CASTEiJ_T0042368.1 MGP_CASTEiJ_G0021600.1 mouse_genomes_project 15 101540397 101642667 - MGP_CASTEiJ_P0042368 Lima1 protein_coding protein_coding MGP_CASTEiJ_T0042369.1 MGP_CASTEiJ_G0021600.1 mouse_genomes_project 15 101543162 101548954 - Lima1 protein_coding retained_intron MGP_CASTEiJ_T0042370.1 MGP_CASTEiJ_G0021600.1 mouse_genomes_project 15 101608733 101642655 - Lima1 protein_coding retained_intron MGP_CASTEiJ_T0042212.1 MGP_CASTEiJ_G0021542.1 mouse_genomes_project 15 99686040 99723479 + MGP_CASTEiJ_P0042212 Pfkm protein_coding protein_coding MGP_CASTEiJ_T0042213.1 MGP_CASTEiJ_G0021542.1 mouse_genomes_project 15 99708384 99732820 + MGP_CASTEiJ_P0042213 Pfkm protein_coding unknown_likely_coding MGP_CASTEiJ_T0009790.1 MGP_CASTEiJ_G0007978.1 mouse_genomes_project 15 76419015 76419105 - Mir3079 miRNA miRNA MGP_CASTEiJ_T0009819.1 MGP_CASTEiJ_G0008007.1 mouse_genomes_project 15 91347031 91347084 + Mir7648 miRNA miRNA MGP_CASTEiJ_T0041285.1 MGP_CASTEiJ_G0021273.1 mouse_genomes_project 15 77051504 77052900 + MGP_CASTEiJ_P0041285 Commd5 protein_coding protein_coding MGP_CASTEiJ_T0041286.1 MGP_CASTEiJ_G0021273.1 mouse_genomes_project 15 77051530 77052786 + MGP_CASTEiJ_P0041286 Commd5 protein_coding protein_coding MGP_CASTEiJ_T0041857.1 MGP_CASTEiJ_G0021449.1 mouse_genomes_project 15 86351696 86361880 - MGP_CASTEiJ_P0041857 7530416G11Rik protein_coding protein_coding MGP_CASTEiJ_T0042654.1 MGP_CASTEiJ_G0021698.1 mouse_genomes_project 15 105441647 105469888 - MGP_CASTEiJ_P0042654 Zfp385a protein_coding protein_coding MGP_CASTEiJ_T0102093.1 MGP_CASTEiJ_G0038818.1 mouse_genomes_project 15 75380590 75382764 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0041360.1 MGP_CASTEiJ_G0021302.1 mouse_genomes_project 15 78710405 78720357 + MGP_CASTEiJ_P0041360 Kctd17 protein_coding protein_coding MGP_CASTEiJ_T0041361.1 MGP_CASTEiJ_G0021302.1 mouse_genomes_project 15 78710405 78720357 + MGP_CASTEiJ_P0041361 Kctd17 protein_coding protein_coding MGP_CASTEiJ_T0041362.1 MGP_CASTEiJ_G0021302.1 mouse_genomes_project 15 78710469 78720769 + MGP_CASTEiJ_P0041362 Kctd17 protein_coding protein_coding MGP_CASTEiJ_T0041363.1 MGP_CASTEiJ_G0021302.1 mouse_genomes_project 15 78710503 78720703 + MGP_CASTEiJ_P0041363 Kctd17 protein_coding protein_coding MGP_CASTEiJ_T0041364.1 MGP_CASTEiJ_G0021302.1 mouse_genomes_project 15 78710532 78717729 + Kctd17 protein_coding retained_intron MGP_CASTEiJ_T0041365.1 MGP_CASTEiJ_G0021302.1 mouse_genomes_project 15 78710637 78720507 + MGP_CASTEiJ_P0041365 Kctd17 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041366.1 MGP_CASTEiJ_G0021302.1 mouse_genomes_project 15 78711967 78720440 + MGP_CASTEiJ_P0041366 Kctd17 protein_coding protein_coding MGP_CASTEiJ_T0041367.1 MGP_CASTEiJ_G0021302.1 mouse_genomes_project 15 78714875 78719603 + Kctd17 protein_coding retained_intron MGP_CASTEiJ_T0041368.1 MGP_CASTEiJ_G0021302.1 mouse_genomes_project 15 78715851 78719448 + Kctd17 protein_coding retained_intron MGP_CASTEiJ_T0012699.1 MGP_CASTEiJ_G0010862.1 mouse_genomes_project 15 43598484 43598781 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102089.1 MGP_CASTEiJ_G0038814.1 mouse_genomes_project 15 75308659 75308871 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0006605.1 MGP_CASTEiJ_G0005464.1 mouse_genomes_project 15 78144749 78150210 + Gm17638 lincRNA lincRNA MGP_CASTEiJ_T0041743.1 MGP_CASTEiJ_G0021412.1 mouse_genomes_project 15 83435588 83548289 - MGP_CASTEiJ_P0041743 Tcf20 protein_coding protein_coding MGP_CASTEiJ_T0041744.1 MGP_CASTEiJ_G0021412.1 mouse_genomes_project 15 83435588 83548289 - MGP_CASTEiJ_P0041744 Tcf20 protein_coding protein_coding MGP_CASTEiJ_T0042274.1 MGP_CASTEiJ_G0021568.1 mouse_genomes_project 15 100466707 100470774 - MGP_CASTEiJ_P0042274 Ddn protein_coding protein_coding MGP_CASTEiJ_T0003486.1 MGP_CASTEiJ_G0003169.1 mouse_genomes_project 15 56894267 56896380 - 9330154K18Rik antisense antisense MGP_CASTEiJ_T0099447.1 MGP_CASTEiJ_G0036360.1 mouse_genomes_project 15 72017109 72017216 - Gm23217 snRNA snRNA MGP_CASTEiJ_T0041305.1 MGP_CASTEiJ_G0021281.1 mouse_genomes_project 15 77587049 77731371 - MGP_CASTEiJ_P0041305 protein_coding protein_coding MGP_CASTEiJ_T0041306.1 MGP_CASTEiJ_G0021281.1 mouse_genomes_project 15 77587049 77731325 - MGP_CASTEiJ_P0041306 protein_coding protein_coding MGP_CASTEiJ_T0009764.1 MGP_CASTEiJ_G0007952.1 mouse_genomes_project 15 10112004 10112144 + miRNA miRNA MGP_CASTEiJ_T0042034.1 MGP_CASTEiJ_G0021496.1 mouse_genomes_project 15 90600541 90664168 + MGP_CASTEiJ_P0042034 Shank3 protein_coding protein_coding MGP_CASTEiJ_T0042035.1 MGP_CASTEiJ_G0021496.1 mouse_genomes_project 15 90600676 90664168 + MGP_CASTEiJ_P0042035 Shank3 protein_coding protein_coding MGP_CASTEiJ_T0042036.1 MGP_CASTEiJ_G0021496.1 mouse_genomes_project 15 90600942 90604241 + Shank3 protein_coding processed_transcript MGP_CASTEiJ_T0042037.1 MGP_CASTEiJ_G0021496.1 mouse_genomes_project 15 90602102 90664166 + MGP_CASTEiJ_P0042037 Shank3 protein_coding protein_coding MGP_CASTEiJ_T0042038.1 MGP_CASTEiJ_G0021496.1 mouse_genomes_project 15 90624966 90636786 + Shank3 protein_coding processed_transcript MGP_CASTEiJ_T0042039.1 MGP_CASTEiJ_G0021496.1 mouse_genomes_project 15 90633187 90634800 + Shank3 protein_coding processed_transcript MGP_CASTEiJ_T0042040.1 MGP_CASTEiJ_G0021496.1 mouse_genomes_project 15 90635281 90647555 + MGP_CASTEiJ_P0042040 Shank3 protein_coding protein_coding MGP_CASTEiJ_T0006601.1 MGP_CASTEiJ_G0005460.1 mouse_genomes_project 15 66805637 66961779 + lincRNA lincRNA MGP_CASTEiJ_T0040475.1 MGP_CASTEiJ_G0021025.1 mouse_genomes_project 15 29867459 29889817 + MGP_CASTEiJ_P0040475 Cmbl protein_coding protein_coding MGP_CASTEiJ_T0040476.1 MGP_CASTEiJ_G0021025.1 mouse_genomes_project 15 29867573 29891668 + MGP_CASTEiJ_P0040476 Cmbl protein_coding protein_coding MGP_CASTEiJ_T0040477.1 MGP_CASTEiJ_G0021025.1 mouse_genomes_project 15 29872862 29886880 + MGP_CASTEiJ_P0040477 Cmbl protein_coding protein_coding MGP_CASTEiJ_T0042491.1 MGP_CASTEiJ_G0021639.1 mouse_genomes_project 15 103520732 103531313 - MGP_CASTEiJ_P0042491 Krt90 protein_coding protein_coding MGP_CASTEiJ_T0041845.1 MGP_CASTEiJ_G0021442.1 mouse_genomes_project 15 85758168 85803683 - MGP_CASTEiJ_P0041845 5031439G07Rik protein_coding protein_coding MGP_CASTEiJ_T0041846.1 MGP_CASTEiJ_G0021442.1 mouse_genomes_project 15 85762203 85774969 - 5031439G07Rik protein_coding retained_intron MGP_CASTEiJ_T0041847.1 MGP_CASTEiJ_G0021442.1 mouse_genomes_project 15 85769921 85804386 - 5031439G07Rik protein_coding processed_transcript MGP_CASTEiJ_T0006608.1 MGP_CASTEiJ_G0005467.1 mouse_genomes_project 15 80128074 80145947 + Gm16576 lincRNA lincRNA MGP_CASTEiJ_T0040548.1 MGP_CASTEiJ_G0021050.1 mouse_genomes_project 15 34553323 34615669 + MGP_CASTEiJ_P0040548 Spag1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042142.1 MGP_CASTEiJ_G0021526.1 mouse_genomes_project 15 97904182 97954820 - MGP_CASTEiJ_P0042142 Scaf11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042143.1 MGP_CASTEiJ_G0021526.1 mouse_genomes_project 15 97904184 97954776 - MGP_CASTEiJ_P0042143 Scaf11 protein_coding protein_coding MGP_CASTEiJ_T0040451.1 MGP_CASTEiJ_G0021014.1 mouse_genomes_project 15 25623769 25698381 + MGP_CASTEiJ_P0040451 Ank protein_coding unknown_likely_coding MGP_CASTEiJ_T0040452.1 MGP_CASTEiJ_G0021014.1 mouse_genomes_project 15 25646621 25701705 + MGP_CASTEiJ_P0040452 Ank protein_coding protein_coding MGP_CASTEiJ_T0040453.1 MGP_CASTEiJ_G0021014.1 mouse_genomes_project 15 25675056 25698327 + Ank protein_coding retained_intron MGP_CASTEiJ_T0041304.1 MGP_CASTEiJ_G0021280.1 mouse_genomes_project 15 77578007 77636120 - protein_coding retained_intron MGP_CASTEiJ_T0041309.1 MGP_CASTEiJ_G0021280.1 mouse_genomes_project 15 77606123 77616657 - MGP_CASTEiJ_P0041309 protein_coding protein_coding MGP_CASTEiJ_T0042224.1 MGP_CASTEiJ_G0021548.1 mouse_genomes_project 15 99936624 99937584 - MGP_CASTEiJ_P0042224 Olfr285 protein_coding protein_coding MGP_CASTEiJ_T0042424.1 MGP_CASTEiJ_G0021619.1 mouse_genomes_project 15 102524684 102552369 - MGP_CASTEiJ_P0042424 Bin2 protein_coding protein_coding MGP_CASTEiJ_T0042425.1 MGP_CASTEiJ_G0021619.1 mouse_genomes_project 15 102524684 102552417 - MGP_CASTEiJ_P0042425 Bin2 protein_coding protein_coding MGP_CASTEiJ_T0042426.1 MGP_CASTEiJ_G0021619.1 mouse_genomes_project 15 102524684 102552391 - MGP_CASTEiJ_P0042426 Bin2 protein_coding protein_coding MGP_CASTEiJ_T0042427.1 MGP_CASTEiJ_G0021619.1 mouse_genomes_project 15 102528576 102552369 - MGP_CASTEiJ_P0042427 Bin2 protein_coding protein_coding MGP_CASTEiJ_T0042428.1 MGP_CASTEiJ_G0021619.1 mouse_genomes_project 15 102528672 102552389 - MGP_CASTEiJ_P0042428 Bin2 protein_coding protein_coding MGP_CASTEiJ_T0042429.1 MGP_CASTEiJ_G0021619.1 mouse_genomes_project 15 102528714 102534545 - Bin2 protein_coding processed_transcript MGP_CASTEiJ_T0042430.1 MGP_CASTEiJ_G0021619.1 mouse_genomes_project 15 102531121 102532676 - Bin2 protein_coding retained_intron MGP_CASTEiJ_T0009823.1 MGP_CASTEiJ_G0008011.1 mouse_genomes_project 15 102531147 102531214 - Mir6961 miRNA miRNA MGP_CASTEiJ_T0042529.1 MGP_CASTEiJ_G0021663.1 mouse_genomes_project 15 104246028 104265887 - MGP_CASTEiJ_P0042529 Itgb7 protein_coding protein_coding MGP_CASTEiJ_T0042530.1 MGP_CASTEiJ_G0021663.1 mouse_genomes_project 15 104256547 104265887 - MGP_CASTEiJ_P0042530 Itgb7 protein_coding protein_coding MGP_CASTEiJ_T0040247.1 MGP_CASTEiJ_G0020959.1 mouse_genomes_project 15 3748336 3811164 - MGP_CASTEiJ_P0040247 Osmr protein_coding protein_coding MGP_CASTEiJ_T0040248.1 MGP_CASTEiJ_G0020959.1 mouse_genomes_project 15 3749796 3811164 - MGP_CASTEiJ_P0040248 Osmr protein_coding protein_coding MGP_CASTEiJ_T0040249.1 MGP_CASTEiJ_G0020959.1 mouse_genomes_project 15 3755236 3759143 - Osmr protein_coding retained_intron MGP_CASTEiJ_T0040250.1 MGP_CASTEiJ_G0020959.1 mouse_genomes_project 15 3770943 3810462 - Osmr protein_coding retained_intron MGP_CASTEiJ_T0040251.1 MGP_CASTEiJ_G0020959.1 mouse_genomes_project 15 3778141 3810451 - Osmr protein_coding retained_intron MGP_CASTEiJ_T0040252.1 MGP_CASTEiJ_G0020959.1 mouse_genomes_project 15 3789123 3810490 - Osmr protein_coding retained_intron MGP_CASTEiJ_T0009787.1 MGP_CASTEiJ_G0007975.1 mouse_genomes_project 15 76175927 76175988 - Mir6952 miRNA miRNA MGP_CASTEiJ_T0041095.1 MGP_CASTEiJ_G0021233.1 mouse_genomes_project 15 76198785 76203196 - MGP_CASTEiJ_P0041095 protein_coding protein_coding MGP_CASTEiJ_T0041341.1 MGP_CASTEiJ_G0021293.1 mouse_genomes_project 15 78142061 78153907 - MGP_CASTEiJ_P0041341 Eif3d protein_coding protein_coding MGP_CASTEiJ_T0040382.1 MGP_CASTEiJ_G0020996.1 mouse_genomes_project 15 9561154 9594162 + MGP_CASTEiJ_P0040382 Golph3 protein_coding protein_coding MGP_CASTEiJ_T0040383.1 MGP_CASTEiJ_G0020996.1 mouse_genomes_project 15 9561358 9592751 + MGP_CASTEiJ_P0040383 Golph3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100681.1 MGP_CASTEiJ_G0037594.1 mouse_genomes_project 15 52634255 52634387 - Gm23200 snoRNA snoRNA MGP_CASTEiJ_T0009813.1 MGP_CASTEiJ_G0008001.1 mouse_genomes_project 15 86582332 86582417 + Mirlet7b miRNA miRNA MGP_CASTEiJ_T0042626.1 MGP_CASTEiJ_G0021688.1 mouse_genomes_project 15 105074291 105079511 + MGP_CASTEiJ_P0042626 Hoxc9 protein_coding protein_coding MGP_CASTEiJ_T0042627.1 MGP_CASTEiJ_G0021688.1 mouse_genomes_project 15 105074884 105084593 + MGP_CASTEiJ_P0042627 Hoxc9 protein_coding protein_coding MGP_CASTEiJ_T0011063.1 MGP_CASTEiJ_G0009251.1 mouse_genomes_project 15 78647694 78647804 + Gm26329 misc_RNA misc_RNA MGP_CASTEiJ_T0006618.1 MGP_CASTEiJ_G0005473.1 mouse_genomes_project 15 86512564 86518631 + D130051D11Rik lincRNA lincRNA MGP_CASTEiJ_T0099429.1 MGP_CASTEiJ_G0036342.1 mouse_genomes_project 15 34543355 34543514 + Gm22979 snRNA snRNA MGP_CASTEiJ_T0042566.1 MGP_CASTEiJ_G0021672.1 mouse_genomes_project 15 104506119 104515932 + MGP_CASTEiJ_P0042566 Amhr2 protein_coding protein_coding MGP_CASTEiJ_T0042567.1 MGP_CASTEiJ_G0021672.1 mouse_genomes_project 15 104513442 104515847 + MGP_CASTEiJ_P0042567 Amhr2 protein_coding protein_coding MGP_CASTEiJ_T0042568.1 MGP_CASTEiJ_G0021672.1 mouse_genomes_project 15 104513606 104514155 + Amhr2 protein_coding retained_intron MGP_CASTEiJ_T0042652.1 MGP_CASTEiJ_G0021696.1 mouse_genomes_project 15 105396187 105426502 + MGP_CASTEiJ_P0042652 Copz1 protein_coding protein_coding MGP_CASTEiJ_T0041991.1 MGP_CASTEiJ_G0021484.1 mouse_genomes_project 15 90429044 90433700 - MGP_CASTEiJ_P0041991 Lmf2 protein_coding protein_coding MGP_CASTEiJ_T0041516.1 MGP_CASTEiJ_G0021346.1 mouse_genomes_project 15 80182627 80228361 - MGP_CASTEiJ_P0041516 Npcd protein_coding protein_coding MGP_CASTEiJ_T0041517.1 MGP_CASTEiJ_G0021346.1 mouse_genomes_project 15 80182627 80228361 - MGP_CASTEiJ_P0041517 Npcd protein_coding protein_coding MGP_CASTEiJ_T0041411.1 MGP_CASTEiJ_G0021319.1 mouse_genomes_project 15 79357089 79359374 + MGP_CASTEiJ_P0041411 H1f0 protein_coding protein_coding MGP_CASTEiJ_T0041496.1 MGP_CASTEiJ_G0021340.1 mouse_genomes_project 15 80057929 80060050 + MGP_CASTEiJ_P0041496 Tomm22 protein_coding protein_coding MGP_CASTEiJ_T0041497.1 MGP_CASTEiJ_G0021340.1 mouse_genomes_project 15 80058159 80059846 + Tomm22 protein_coding processed_transcript MGP_CASTEiJ_T0006612.1 MGP_CASTEiJ_G0005470.1 mouse_genomes_project 15 83632503 83640362 + AW121686 lincRNA lincRNA MGP_CASTEiJ_T0040608.1 MGP_CASTEiJ_G0021068.1 mouse_genomes_project 15 37340477 37359298 + MGP_CASTEiJ_P0040608 Baalc protein_coding protein_coding MGP_CASTEiJ_T0099448.1 MGP_CASTEiJ_G0036361.1 mouse_genomes_project 15 72271041 72271103 - Gm24390 snRNA snRNA MGP_CASTEiJ_T0041018.1 MGP_CASTEiJ_G0021210.1 mouse_genomes_project 15 75511771 75513722 + MGP_CASTEiJ_P0041018 Ly6l protein_coding protein_coding MGP_CASTEiJ_T0041356.1 MGP_CASTEiJ_G0021300.1 mouse_genomes_project 15 78679164 78687589 - MGP_CASTEiJ_P0041356 Tst protein_coding protein_coding MGP_CASTEiJ_T0042505.1 MGP_CASTEiJ_G0021652.1 mouse_genomes_project 15 103929208 103941926 - MGP_CASTEiJ_P0042505 Krt79 protein_coding protein_coding MGP_CASTEiJ_T0042494.1 MGP_CASTEiJ_G0021642.1 mouse_genomes_project 15 103686036 103694077 - MGP_CASTEiJ_P0042494 Krt5 protein_coding protein_coding MGP_CASTEiJ_T0040614.1 MGP_CASTEiJ_G0021071.1 mouse_genomes_project 15 37511060 37530450 - MGP_CASTEiJ_P0040614 Slc25a32 protein_coding protein_coding MGP_CASTEiJ_T0040441.1 MGP_CASTEiJ_G0021010.1 mouse_genomes_project 15 23862669 24002505 + MGP_CASTEiJ_P0040441 Fam134b protein_coding protein_coding MGP_CASTEiJ_T0040442.1 MGP_CASTEiJ_G0021010.1 mouse_genomes_project 15 23970139 24001157 + MGP_CASTEiJ_P0040442 Fam134b protein_coding protein_coding MGP_CASTEiJ_T0042630.1 MGP_CASTEiJ_G0021690.1 mouse_genomes_project 15 105099867 105112371 + Hoxc6 protein_coding processed_transcript MGP_CASTEiJ_T0042631.1 MGP_CASTEiJ_G0021690.1 mouse_genomes_project 15 105102137 105111610 + Hoxc6 protein_coding processed_transcript MGP_CASTEiJ_T0042632.1 MGP_CASTEiJ_G0021690.1 mouse_genomes_project 15 105111176 105113483 + MGP_CASTEiJ_P0042632 Hoxc6 protein_coding protein_coding MGP_CASTEiJ_T0040713.1 MGP_CASTEiJ_G0021112.1 mouse_genomes_project 15 54191365 54347920 + MGP_CASTEiJ_P0040713 Deptor protein_coding protein_coding MGP_CASTEiJ_T0040714.1 MGP_CASTEiJ_G0021112.1 mouse_genomes_project 15 54191472 54305682 + MGP_CASTEiJ_P0040714 Deptor protein_coding protein_coding MGP_CASTEiJ_T0040715.1 MGP_CASTEiJ_G0021112.1 mouse_genomes_project 15 54213757 54340217 + MGP_CASTEiJ_P0040715 Deptor protein_coding protein_coding MGP_CASTEiJ_T0042516.1 MGP_CASTEiJ_G0021659.1 mouse_genomes_project 15 104166723 104172450 + MGP_CASTEiJ_P0042516 Igfbp6 protein_coding protein_coding MGP_CASTEiJ_T0006640.1 MGP_CASTEiJ_G0005489.1 mouse_genomes_project 15 105205156 105211093 - Gm28876 lincRNA lincRNA MGP_CASTEiJ_T0042538.1 MGP_CASTEiJ_G0021666.1 mouse_genomes_project 15 104338703 104371158 + MGP_CASTEiJ_P0042538 Espl1 protein_coding protein_coding MGP_CASTEiJ_T0041877.1 MGP_CASTEiJ_G0021456.1 mouse_genomes_project 15 86770297 86785913 + MGP_CASTEiJ_P0041877 Trmu protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041878.1 MGP_CASTEiJ_G0021456.1 mouse_genomes_project 15 86770305 86790680 + MGP_CASTEiJ_P0041878 Trmu protein_coding protein_coding MGP_CASTEiJ_T0041879.1 MGP_CASTEiJ_G0021456.1 mouse_genomes_project 15 86770366 86773830 + MGP_CASTEiJ_P0041879 Trmu protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041880.1 MGP_CASTEiJ_G0021456.1 mouse_genomes_project 15 86770399 86787261 + Trmu protein_coding retained_intron MGP_CASTEiJ_T0041882.1 MGP_CASTEiJ_G0021456.1 mouse_genomes_project 15 86776157 86789699 + MGP_CASTEiJ_P0041882 Trmu protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041883.1 MGP_CASTEiJ_G0021456.1 mouse_genomes_project 15 86785891 86787778 + Trmu protein_coding retained_intron MGP_CASTEiJ_T0041884.1 MGP_CASTEiJ_G0021456.1 mouse_genomes_project 15 86787508 86790680 + Trmu protein_coding processed_transcript MGP_CASTEiJ_T0041885.1 MGP_CASTEiJ_G0021456.1 mouse_genomes_project 15 86788052 86790332 + Trmu protein_coding retained_intron MGP_CASTEiJ_T0041886.1 MGP_CASTEiJ_G0021456.1 mouse_genomes_project 15 86788182 86790682 + Trmu protein_coding retained_intron MGP_CASTEiJ_T0041745.1 MGP_CASTEiJ_G0021413.1 mouse_genomes_project 15 83648941 83673553 - MGP_CASTEiJ_P0041745 Nfam1 protein_coding protein_coding MGP_CASTEiJ_T0041746.1 MGP_CASTEiJ_G0021413.1 mouse_genomes_project 15 83650952 83684709 - MGP_CASTEiJ_P0041746 Nfam1 protein_coding protein_coding MGP_CASTEiJ_T0011061.1 MGP_CASTEiJ_G0009249.1 mouse_genomes_project 15 71860474 71860551 + Gm25283 misc_RNA misc_RNA MGP_CASTEiJ_T0040381.1 MGP_CASTEiJ_G0020995.1 mouse_genomes_project 15 9561096 9561558 - MGP_CASTEiJ_P0040381 1810049J17Rik protein_coding protein_coding MGP_CASTEiJ_T0099450.1 MGP_CASTEiJ_G0036363.1 mouse_genomes_project 15 73618801 73618928 + Gm22106 snRNA snRNA MGP_CASTEiJ_T0099428.1 MGP_CASTEiJ_G0036341.1 mouse_genomes_project 15 32839810 32839920 + Gm22208 snRNA snRNA MGP_CASTEiJ_T0041322.1 MGP_CASTEiJ_G0021290.1 mouse_genomes_project 15 77934251 78015651 - MGP_CASTEiJ_P0041322 Myh9 protein_coding protein_coding MGP_CASTEiJ_T0041323.1 MGP_CASTEiJ_G0021290.1 mouse_genomes_project 15 77939164 77940958 - Myh9 protein_coding retained_intron MGP_CASTEiJ_T0041324.1 MGP_CASTEiJ_G0021290.1 mouse_genomes_project 15 77961885 78015532 - Myh9 protein_coding retained_intron MGP_CASTEiJ_T0041325.1 MGP_CASTEiJ_G0021290.1 mouse_genomes_project 15 77963917 78015581 - Myh9 protein_coding retained_intron MGP_CASTEiJ_T0041326.1 MGP_CASTEiJ_G0021290.1 mouse_genomes_project 15 77964433 78015523 - MGP_CASTEiJ_P0041326 Myh9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041327.1 MGP_CASTEiJ_G0021290.1 mouse_genomes_project 15 77968360 77986943 - Myh9 protein_coding processed_transcript MGP_CASTEiJ_T0041328.1 MGP_CASTEiJ_G0021290.1 mouse_genomes_project 15 77979281 78015581 - Myh9 protein_coding retained_intron MGP_CASTEiJ_T0006576.1 MGP_CASTEiJ_G0005446.1 mouse_genomes_project 15 36143871 36168184 + Gm15942 lincRNA lincRNA MGP_CASTEiJ_T0040216.1 MGP_CASTEiJ_G0020954.1 mouse_genomes_project 15 2112612 2150372 - Ptger4 protein_coding processed_transcript MGP_CASTEiJ_T0040217.1 MGP_CASTEiJ_G0020954.1 mouse_genomes_project 15 2141014 2151834 - MGP_CASTEiJ_P0040217 Ptger4 protein_coding protein_coding MGP_CASTEiJ_T0040218.1 MGP_CASTEiJ_G0020954.1 mouse_genomes_project 15 2141014 2151849 - MGP_CASTEiJ_P0040218 Ptger4 protein_coding protein_coding MGP_CASTEiJ_T0009809.1 MGP_CASTEiJ_G0007997.1 mouse_genomes_project 15 84230163 84230240 + Gm24575 miRNA miRNA MGP_CASTEiJ_T0003476.1 MGP_CASTEiJ_G0003161.1 mouse_genomes_project 15 2080043 2091433 - Gm15938 antisense antisense MGP_CASTEiJ_T0099424.1 MGP_CASTEiJ_G0036337.1 mouse_genomes_project 15 18928241 18928348 + Gm25101 snRNA snRNA MGP_CASTEiJ_T0040267.1 MGP_CASTEiJ_G0020965.1 mouse_genomes_project 15 5155376 5281139 + MGP_CASTEiJ_P0040267 2410089E03Rik protein_coding protein_coding MGP_CASTEiJ_T0040268.1 MGP_CASTEiJ_G0020965.1 mouse_genomes_project 15 5158134 5226023 + MGP_CASTEiJ_P0040268 2410089E03Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0040269.1 MGP_CASTEiJ_G0020965.1 mouse_genomes_project 15 5172921 5173776 + 2410089E03Rik protein_coding retained_intron MGP_CASTEiJ_T0040270.1 MGP_CASTEiJ_G0020965.1 mouse_genomes_project 15 5182920 5189832 + 2410089E03Rik protein_coding retained_intron MGP_CASTEiJ_T0040271.1 MGP_CASTEiJ_G0020965.1 mouse_genomes_project 15 5205224 5207891 + 2410089E03Rik protein_coding retained_intron MGP_CASTEiJ_T0040272.1 MGP_CASTEiJ_G0020965.1 mouse_genomes_project 15 5252220 5263972 + 2410089E03Rik protein_coding retained_intron MGP_CASTEiJ_T0042266.1 MGP_CASTEiJ_G0021563.1 mouse_genomes_project 15 100361185 100375242 + MGP_CASTEiJ_P0042266 Ccdc65 protein_coding protein_coding MGP_CASTEiJ_T0040878.1 MGP_CASTEiJ_G0021168.1 mouse_genomes_project 15 66491642 66535123 - MGP_CASTEiJ_P0040878 Ndrg1 protein_coding protein_coding MGP_CASTEiJ_T0040879.1 MGP_CASTEiJ_G0021168.1 mouse_genomes_project 15 66493087 66535124 - MGP_CASTEiJ_P0040879 Ndrg1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040880.1 MGP_CASTEiJ_G0021168.1 mouse_genomes_project 15 66493188 66497058 - Ndrg1 protein_coding retained_intron MGP_CASTEiJ_T0040881.1 MGP_CASTEiJ_G0021168.1 mouse_genomes_project 15 66493399 66535122 - MGP_CASTEiJ_P0040881 Ndrg1 protein_coding protein_coding MGP_CASTEiJ_T0040882.1 MGP_CASTEiJ_G0021168.1 mouse_genomes_project 15 66496747 66535122 - Ndrg1 protein_coding retained_intron MGP_CASTEiJ_T0040883.1 MGP_CASTEiJ_G0021168.1 mouse_genomes_project 15 66504591 66535122 - MGP_CASTEiJ_P0040883 Ndrg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040884.1 MGP_CASTEiJ_G0021168.1 mouse_genomes_project 15 66505653 66535122 - MGP_CASTEiJ_P0040884 Ndrg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040885.1 MGP_CASTEiJ_G0021168.1 mouse_genomes_project 15 66505658 66533407 - MGP_CASTEiJ_P0040885 Ndrg1 protein_coding protein_coding MGP_CASTEiJ_T0040886.1 MGP_CASTEiJ_G0021168.1 mouse_genomes_project 15 66505658 66512930 - MGP_CASTEiJ_P0040886 Ndrg1 protein_coding protein_coding MGP_CASTEiJ_T0040887.1 MGP_CASTEiJ_G0021168.1 mouse_genomes_project 15 66505671 66535099 - MGP_CASTEiJ_P0040887 Ndrg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040888.1 MGP_CASTEiJ_G0021168.1 mouse_genomes_project 15 66505676 66535078 - MGP_CASTEiJ_P0040888 Ndrg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040889.1 MGP_CASTEiJ_G0021168.1 mouse_genomes_project 15 66505708 66535099 - MGP_CASTEiJ_P0040889 Ndrg1 protein_coding protein_coding MGP_CASTEiJ_T0040890.1 MGP_CASTEiJ_G0021168.1 mouse_genomes_project 15 66505715 66533422 - MGP_CASTEiJ_P0040890 Ndrg1 protein_coding protein_coding MGP_CASTEiJ_T0040891.1 MGP_CASTEiJ_G0021168.1 mouse_genomes_project 15 66510973 66535123 - MGP_CASTEiJ_P0040891 Ndrg1 protein_coding protein_coding MGP_CASTEiJ_T0042267.1 MGP_CASTEiJ_G0021564.1 mouse_genomes_project 15 100376292 100380119 - MGP_CASTEiJ_P0042267 Fkbp11 protein_coding protein_coding MGP_CASTEiJ_T0041677.1 MGP_CASTEiJ_G0021384.1 mouse_genomes_project 15 82517801 82527709 - MGP_CASTEiJ_P0041677 Pmm1 protein_coding protein_coding MGP_CASTEiJ_T0041678.1 MGP_CASTEiJ_G0021384.1 mouse_genomes_project 15 82517801 82527648 - MGP_CASTEiJ_P0041678 Pmm1 protein_coding protein_coding MGP_CASTEiJ_T0041679.1 MGP_CASTEiJ_G0021384.1 mouse_genomes_project 15 82518095 82520202 - Pmm1 protein_coding retained_intron MGP_CASTEiJ_T0041680.1 MGP_CASTEiJ_G0021384.1 mouse_genomes_project 15 82518137 82527621 - MGP_CASTEiJ_P0041680 Pmm1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041681.1 MGP_CASTEiJ_G0021384.1 mouse_genomes_project 15 82518240 82518953 - Pmm1 protein_coding retained_intron MGP_CASTEiJ_T0041682.1 MGP_CASTEiJ_G0021384.1 mouse_genomes_project 15 82522291 82527612 - Pmm1 protein_coding retained_intron MGP_CASTEiJ_T0041683.1 MGP_CASTEiJ_G0021384.1 mouse_genomes_project 15 82524090 82527543 - Pmm1 protein_coding retained_intron MGP_CASTEiJ_T0040709.1 MGP_CASTEiJ_G0021111.1 mouse_genomes_project 15 54176470 54192627 - MGP_CASTEiJ_P0040709 Gm9920 protein_coding protein_coding MGP_CASTEiJ_T0040710.1 MGP_CASTEiJ_G0021111.1 mouse_genomes_project 15 54176623 54192505 - MGP_CASTEiJ_P0040710 Gm9920 protein_coding protein_coding MGP_CASTEiJ_T0040711.1 MGP_CASTEiJ_G0021111.1 mouse_genomes_project 15 54188820 54192722 - Gm9920 protein_coding processed_transcript MGP_CASTEiJ_T0040712.1 MGP_CASTEiJ_G0021111.1 mouse_genomes_project 15 54190914 54192505 - Gm9920 protein_coding retained_intron MGP_CASTEiJ_T0000898.1 MGP_CASTEiJ_G0000837.1 mouse_genomes_project 15 18998881 18999300 + TEC TEC MGP_CASTEiJ_T0042301.1 MGP_CASTEiJ_G0021582.1 mouse_genomes_project 15 100952185 100961274 - MGP_CASTEiJ_P0042301 Mcrs1 protein_coding protein_coding MGP_CASTEiJ_T0042577.1 MGP_CASTEiJ_G0021675.1 mouse_genomes_project 15 104564587 104584453 - MGP_CASTEiJ_P0042577 Map3k12 protein_coding protein_coding MGP_CASTEiJ_T0042578.1 MGP_CASTEiJ_G0021675.1 mouse_genomes_project 15 104565725 104577714 - MGP_CASTEiJ_P0042578 Map3k12 protein_coding protein_coding MGP_CASTEiJ_T0042579.1 MGP_CASTEiJ_G0021675.1 mouse_genomes_project 15 104565974 104584681 - MGP_CASTEiJ_P0042579 Map3k12 protein_coding protein_coding MGP_CASTEiJ_T0042581.1 MGP_CASTEiJ_G0021675.1 mouse_genomes_project 15 104572348 104584621 - MGP_CASTEiJ_P0042581 Map3k12 protein_coding protein_coding MGP_CASTEiJ_T0042582.1 MGP_CASTEiJ_G0021675.1 mouse_genomes_project 15 104572410 104584592 - MGP_CASTEiJ_P0042582 Map3k12 protein_coding protein_coding MGP_CASTEiJ_T0042583.1 MGP_CASTEiJ_G0021675.1 mouse_genomes_project 15 104572447 104584433 - MGP_CASTEiJ_P0042583 Map3k12 protein_coding protein_coding MGP_CASTEiJ_T0042584.1 MGP_CASTEiJ_G0021675.1 mouse_genomes_project 15 104573092 104584429 - Map3k12 protein_coding processed_transcript MGP_CASTEiJ_T0042585.1 MGP_CASTEiJ_G0021675.1 mouse_genomes_project 15 104576106 104577806 - Map3k12 protein_coding processed_transcript MGP_CASTEiJ_T0009817.1 MGP_CASTEiJ_G0008005.1 mouse_genomes_project 15 90250376 90250449 - Mir6958 miRNA miRNA MGP_CASTEiJ_T0041389.1 MGP_CASTEiJ_G0021315.1 mouse_genomes_project 15 79221175 79240375 + protein_coding processed_transcript MGP_CASTEiJ_T0041390.1 MGP_CASTEiJ_G0021315.1 mouse_genomes_project 15 79221275 79233185 + MGP_CASTEiJ_P0041390 protein_coding protein_coding MGP_CASTEiJ_T0041391.1 MGP_CASTEiJ_G0021315.1 mouse_genomes_project 15 79221275 79233185 + MGP_CASTEiJ_P0041391 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041392.1 MGP_CASTEiJ_G0021315.1 mouse_genomes_project 15 79221275 79233185 + MGP_CASTEiJ_P0041392 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041393.1 MGP_CASTEiJ_G0021315.1 mouse_genomes_project 15 79221275 79233185 + MGP_CASTEiJ_P0041393 protein_coding protein_coding MGP_CASTEiJ_T0041394.1 MGP_CASTEiJ_G0021315.1 mouse_genomes_project 15 79221275 79233181 + MGP_CASTEiJ_P0041394 protein_coding protein_coding MGP_CASTEiJ_T0041395.1 MGP_CASTEiJ_G0021315.1 mouse_genomes_project 15 79235040 79240860 + MGP_CASTEiJ_P0041395 protein_coding protein_coding MGP_CASTEiJ_T0099465.1 MGP_CASTEiJ_G0036378.1 mouse_genomes_project 15 97039403 97039507 - Gm24668 snRNA snRNA MGP_CASTEiJ_T0042255.1 MGP_CASTEiJ_G0021560.1 mouse_genomes_project 15 100280239 100292319 + MGP_CASTEiJ_P0042255 Cacnb3 protein_coding protein_coding MGP_CASTEiJ_T0042256.1 MGP_CASTEiJ_G0021560.1 mouse_genomes_project 15 100282760 100292319 + MGP_CASTEiJ_P0042256 Cacnb3 protein_coding protein_coding MGP_CASTEiJ_T0042257.1 MGP_CASTEiJ_G0021560.1 mouse_genomes_project 15 100283134 100291457 + MGP_CASTEiJ_P0042257 Cacnb3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041500.1 MGP_CASTEiJ_G0021343.1 mouse_genomes_project 15 80110107 80127833 - Sun2 protein_coding retained_intron MGP_CASTEiJ_T0041501.1 MGP_CASTEiJ_G0021343.1 mouse_genomes_project 15 80110107 80127911 - MGP_CASTEiJ_P0041501 Sun2 protein_coding protein_coding MGP_CASTEiJ_T0041502.1 MGP_CASTEiJ_G0021343.1 mouse_genomes_project 15 80110108 80127881 - MGP_CASTEiJ_P0041502 Sun2 protein_coding protein_coding MGP_CASTEiJ_T0041503.1 MGP_CASTEiJ_G0021343.1 mouse_genomes_project 15 80110110 80127913 - MGP_CASTEiJ_P0041503 Sun2 protein_coding protein_coding MGP_CASTEiJ_T0041504.1 MGP_CASTEiJ_G0021343.1 mouse_genomes_project 15 80115629 80127881 - Sun2 protein_coding retained_intron MGP_CASTEiJ_T0041505.1 MGP_CASTEiJ_G0021343.1 mouse_genomes_project 15 80119481 80121328 - Sun2 protein_coding retained_intron MGP_CASTEiJ_T0041506.1 MGP_CASTEiJ_G0021343.1 mouse_genomes_project 15 80124023 80127492 - MGP_CASTEiJ_P0041506 Sun2 protein_coding protein_coding MGP_CASTEiJ_T0041507.1 MGP_CASTEiJ_G0021343.1 mouse_genomes_project 15 80125105 80127480 - MGP_CASTEiJ_P0041507 Sun2 protein_coding protein_coding MGP_CASTEiJ_T0041508.1 MGP_CASTEiJ_G0021343.1 mouse_genomes_project 15 80125212 80127469 - MGP_CASTEiJ_P0041508 Sun2 protein_coding protein_coding MGP_CASTEiJ_T0003492.1 MGP_CASTEiJ_G0003175.1 mouse_genomes_project 15 74647997 74649227 + 4933427E11Rik antisense antisense MGP_CASTEiJ_T0003493.1 MGP_CASTEiJ_G0003175.1 mouse_genomes_project 15 74647997 74649229 + 4933427E11Rik antisense antisense MGP_CASTEiJ_T0040701.1 MGP_CASTEiJ_G0021108.1 mouse_genomes_project 15 53890762 53974257 - MGP_CASTEiJ_P0040701 Enpp2 protein_coding protein_coding MGP_CASTEiJ_T0040702.1 MGP_CASTEiJ_G0021108.1 mouse_genomes_project 15 53890765 53974113 - MGP_CASTEiJ_P0040702 Enpp2 protein_coding protein_coding MGP_CASTEiJ_T0040703.1 MGP_CASTEiJ_G0021108.1 mouse_genomes_project 15 53891133 53974129 - MGP_CASTEiJ_P0040703 Enpp2 protein_coding protein_coding MGP_CASTEiJ_T0040704.1 MGP_CASTEiJ_G0021108.1 mouse_genomes_project 15 53891230 53974072 - MGP_CASTEiJ_P0040704 Enpp2 protein_coding protein_coding MGP_CASTEiJ_T0040938.1 MGP_CASTEiJ_G0021182.1 mouse_genomes_project 15 73612786 73648592 + MGP_CASTEiJ_P0040938 Ptp4a3 protein_coding protein_coding MGP_CASTEiJ_T0040939.1 MGP_CASTEiJ_G0021182.1 mouse_genomes_project 15 73612786 73648592 + MGP_CASTEiJ_P0040939 Ptp4a3 protein_coding protein_coding MGP_CASTEiJ_T0040940.1 MGP_CASTEiJ_G0021182.1 mouse_genomes_project 15 73614582 73648592 + MGP_CASTEiJ_P0040940 Ptp4a3 protein_coding protein_coding MGP_CASTEiJ_T0040941.1 MGP_CASTEiJ_G0021182.1 mouse_genomes_project 15 73637739 73648592 + MGP_CASTEiJ_P0040941 Ptp4a3 protein_coding protein_coding MGP_CASTEiJ_T0040942.1 MGP_CASTEiJ_G0021182.1 mouse_genomes_project 15 73638084 73647080 + MGP_CASTEiJ_P0040942 Ptp4a3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042290.1 MGP_CASTEiJ_G0021574.1 mouse_genomes_project 15 100693406 100693721 + MGP_CASTEiJ_P0042290 Gm8973 protein_coding protein_coding MGP_CASTEiJ_T0099457.1 MGP_CASTEiJ_G0036370.1 mouse_genomes_project 15 82118186 82118293 + Gm22067 snRNA snRNA MGP_CASTEiJ_T0041402.1 MGP_CASTEiJ_G0021318.1 mouse_genomes_project 15 79269933 79291770 + Triobp protein_coding processed_transcript MGP_CASTEiJ_T0041403.1 MGP_CASTEiJ_G0021318.1 mouse_genomes_project 15 79269933 79330019 + MGP_CASTEiJ_P0041403 Triobp protein_coding protein_coding MGP_CASTEiJ_T0041404.1 MGP_CASTEiJ_G0021318.1 mouse_genomes_project 15 79269933 79330312 + MGP_CASTEiJ_P0041404 Triobp protein_coding protein_coding MGP_CASTEiJ_T0041405.1 MGP_CASTEiJ_G0021318.1 mouse_genomes_project 15 79270115 79299519 + MGP_CASTEiJ_P0041405 Triobp protein_coding unknown_likely_coding MGP_CASTEiJ_T0041406.1 MGP_CASTEiJ_G0021318.1 mouse_genomes_project 15 79307457 79330309 + MGP_CASTEiJ_P0041406 Triobp protein_coding protein_coding MGP_CASTEiJ_T0041407.1 MGP_CASTEiJ_G0021318.1 mouse_genomes_project 15 79307471 79330307 + MGP_CASTEiJ_P0041407 Triobp protein_coding protein_coding MGP_CASTEiJ_T0041408.1 MGP_CASTEiJ_G0021318.1 mouse_genomes_project 15 79307493 79319292 + MGP_CASTEiJ_P0041408 Triobp protein_coding protein_coding MGP_CASTEiJ_T0041409.1 MGP_CASTEiJ_G0021318.1 mouse_genomes_project 15 79308142 79315863 + MGP_CASTEiJ_P0041409 Triobp protein_coding protein_coding MGP_CASTEiJ_T0041410.1 MGP_CASTEiJ_G0021318.1 mouse_genomes_project 15 79326624 79329142 + Triobp protein_coding processed_transcript MGP_CASTEiJ_T0006634.1 MGP_CASTEiJ_G0005484.1 mouse_genomes_project 15 103144651 103147577 - A330009N23Rik lincRNA lincRNA MGP_CASTEiJ_T0100664.1 MGP_CASTEiJ_G0037577.1 mouse_genomes_project 15 28274527 28274598 - Gm24554 snoRNA snoRNA MGP_CASTEiJ_T0040184.1 MGP_CASTEiJ_G0020942.1 mouse_genomes_project 15 850277 863927 - MGP_CASTEiJ_P0040184 Fbxo4 protein_coding protein_coding MGP_CASTEiJ_T0040185.1 MGP_CASTEiJ_G0020942.1 mouse_genomes_project 15 853583 857622 - Fbxo4 protein_coding processed_transcript MGP_CASTEiJ_T0040186.1 MGP_CASTEiJ_G0020942.1 mouse_genomes_project 15 855684 863805 - MGP_CASTEiJ_P0040186 Fbxo4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040187.1 MGP_CASTEiJ_G0020942.1 mouse_genomes_project 15 856109 856813 - Fbxo4 protein_coding retained_intron MGP_CASTEiJ_T0041738.1 MGP_CASTEiJ_G0021408.1 mouse_genomes_project 15 83243803 83248876 - MGP_CASTEiJ_P0041738 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0099422.1 MGP_CASTEiJ_G0036335.1 mouse_genomes_project 15 9379390 9379499 - Gm25713 snRNA snRNA MGP_CASTEiJ_T0041721.1 MGP_CASTEiJ_G0021400.1 mouse_genomes_project 15 82943507 82947852 + Fam109b protein_coding processed_transcript MGP_CASTEiJ_T0041723.1 MGP_CASTEiJ_G0021400.1 mouse_genomes_project 15 82945130 82947866 + Fam109b protein_coding processed_transcript MGP_CASTEiJ_T0041724.1 MGP_CASTEiJ_G0021400.1 mouse_genomes_project 15 82945435 82950331 + MGP_CASTEiJ_P0041724 Fam109b protein_coding protein_coding MGP_CASTEiJ_T0041726.1 MGP_CASTEiJ_G0021400.1 mouse_genomes_project 15 82945756 82950322 + MGP_CASTEiJ_P0041726 Fam109b protein_coding protein_coding MGP_CASTEiJ_T0040395.1 MGP_CASTEiJ_G0020998.1 mouse_genomes_project 15 10079355 10096921 - MGP_CASTEiJ_P0040395 6030458C11Rik protein_coding protein_coding MGP_CASTEiJ_T0042362.1 MGP_CASTEiJ_G0021598.1 mouse_genomes_project 15 101482474 101484775 + MGP_CASTEiJ_P0042362 Cox14 protein_coding protein_coding MGP_CASTEiJ_T0009775.1 MGP_CASTEiJ_G0007963.1 mouse_genomes_project 15 36998122 36998197 - Mir6951 miRNA miRNA MGP_CASTEiJ_T0040195.1 MGP_CASTEiJ_G0020945.1 mouse_genomes_project 15 1164721 1169314 + MGP_CASTEiJ_P0040195 Socs6 protein_coding protein_coding MGP_CASTEiJ_T0041525.1 MGP_CASTEiJ_G0021348.1 mouse_genomes_project 15 80297153 80310106 + MGP_CASTEiJ_P0041525 Apobec3 protein_coding protein_coding MGP_CASTEiJ_T0041526.1 MGP_CASTEiJ_G0021348.1 mouse_genomes_project 15 80297188 80310159 + MGP_CASTEiJ_P0041526 Apobec3 protein_coding protein_coding MGP_CASTEiJ_T0041527.1 MGP_CASTEiJ_G0021348.1 mouse_genomes_project 15 80297539 80302465 + Apobec3 protein_coding processed_transcript MGP_CASTEiJ_T0041528.1 MGP_CASTEiJ_G0021348.1 mouse_genomes_project 15 80297899 80310051 + MGP_CASTEiJ_P0041528 Apobec3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041529.1 MGP_CASTEiJ_G0021348.1 mouse_genomes_project 15 80297930 80311932 + MGP_CASTEiJ_P0041529 Apobec3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041530.1 MGP_CASTEiJ_G0021348.1 mouse_genomes_project 15 80297936 80312652 + MGP_CASTEiJ_P0041530 Apobec3 protein_coding protein_coding MGP_CASTEiJ_T0041531.1 MGP_CASTEiJ_G0021348.1 mouse_genomes_project 15 80297937 80313000 + MGP_CASTEiJ_P0041531 Apobec3 protein_coding protein_coding MGP_CASTEiJ_T0041532.1 MGP_CASTEiJ_G0021348.1 mouse_genomes_project 15 80297943 80320153 + MGP_CASTEiJ_P0041532 Apobec3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041533.1 MGP_CASTEiJ_G0021348.1 mouse_genomes_project 15 80297972 80311932 + MGP_CASTEiJ_P0041533 Apobec3 protein_coding protein_coding MGP_CASTEiJ_T0041534.1 MGP_CASTEiJ_G0021348.1 mouse_genomes_project 15 80300545 80302886 + MGP_CASTEiJ_P0041534 Apobec3 protein_coding protein_coding MGP_CASTEiJ_T0041535.1 MGP_CASTEiJ_G0021348.1 mouse_genomes_project 15 80302523 80310469 + Apobec3 protein_coding retained_intron MGP_CASTEiJ_T0041536.1 MGP_CASTEiJ_G0021348.1 mouse_genomes_project 15 80304884 80312487 + Apobec3 protein_coding retained_intron MGP_CASTEiJ_T0041537.1 MGP_CASTEiJ_G0021348.1 mouse_genomes_project 15 80310673 80311640 + Apobec3 protein_coding retained_intron MGP_CASTEiJ_T0040861.1 MGP_CASTEiJ_G0021165.1 mouse_genomes_project 15 66215936 66406252 + MGP_CASTEiJ_P0040861 Tg protein_coding protein_coding MGP_CASTEiJ_T0040862.1 MGP_CASTEiJ_G0021165.1 mouse_genomes_project 15 66233812 66406138 + MGP_CASTEiJ_P0040862 Tg protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040863.1 MGP_CASTEiJ_G0021165.1 mouse_genomes_project 15 66247744 66261481 + Tg protein_coding processed_transcript MGP_CASTEiJ_T0040864.1 MGP_CASTEiJ_G0021165.1 mouse_genomes_project 15 66251759 66406138 + MGP_CASTEiJ_P0040864 Tg protein_coding protein_coding MGP_CASTEiJ_T0040865.1 MGP_CASTEiJ_G0021165.1 mouse_genomes_project 15 66262242 66271710 + Tg protein_coding processed_transcript MGP_CASTEiJ_T0040866.1 MGP_CASTEiJ_G0021165.1 mouse_genomes_project 15 66262884 66276091 + Tg protein_coding processed_transcript MGP_CASTEiJ_T0040867.1 MGP_CASTEiJ_G0021165.1 mouse_genomes_project 15 66284576 66406252 + MGP_CASTEiJ_P0040867 Tg protein_coding protein_coding MGP_CASTEiJ_T0040873.1 MGP_CASTEiJ_G0021165.1 mouse_genomes_project 15 66351508 66406252 + Tg protein_coding processed_transcript MGP_CASTEiJ_T0009773.1 MGP_CASTEiJ_G0007961.1 mouse_genomes_project 15 35203854 35203926 - Gm25303 miRNA miRNA MGP_CASTEiJ_T0042393.1 MGP_CASTEiJ_G0021609.1 mouse_genomes_project 15 102136932 102149109 + MGP_CASTEiJ_P0042393 protein_coding protein_coding MGP_CASTEiJ_T0042095.1 MGP_CASTEiJ_G0021510.1 mouse_genomes_project 15 94527584 94564123 - MGP_CASTEiJ_P0042095 Gxylt1 protein_coding protein_coding MGP_CASTEiJ_T0042096.1 MGP_CASTEiJ_G0021510.1 mouse_genomes_project 15 94534170 94564034 - MGP_CASTEiJ_P0042096 Gxylt1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041142.1 MGP_CASTEiJ_G0021241.1 mouse_genomes_project 15 76455599 76458878 + MGP_CASTEiJ_P0041142 Exosc4 protein_coding protein_coding MGP_CASTEiJ_T0041143.1 MGP_CASTEiJ_G0021241.1 mouse_genomes_project 15 76455793 76457296 + Exosc4 protein_coding processed_transcript MGP_CASTEiJ_T0100656.1 MGP_CASTEiJ_G0037569.1 mouse_genomes_project 15 3089434 3089566 - Gm23139 snoRNA snoRNA MGP_CASTEiJ_T0040691.1 MGP_CASTEiJ_G0021102.1 mouse_genomes_project 15 52472802 52946248 - Samd12 protein_coding processed_transcript MGP_CASTEiJ_T0040692.1 MGP_CASTEiJ_G0021102.1 mouse_genomes_project 15 52472983 52946241 - MGP_CASTEiJ_P0040692 Samd12 protein_coding protein_coding MGP_CASTEiJ_T0040693.1 MGP_CASTEiJ_G0021102.1 mouse_genomes_project 15 52473378 52946092 - MGP_CASTEiJ_P0040693 Samd12 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040694.1 MGP_CASTEiJ_G0021102.1 mouse_genomes_project 15 52863635 52946248 - Samd12 protein_coding processed_transcript MGP_CASTEiJ_T0011060.1 MGP_CASTEiJ_G0009248.1 mouse_genomes_project 15 61554458 61554585 + Gm27957 misc_RNA misc_RNA MGP_CASTEiJ_T0040406.1 MGP_CASTEiJ_G0021001.1 mouse_genomes_project 15 14328836 14468074 + MGP_CASTEiJ_P0040406 Cdh9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040407.1 MGP_CASTEiJ_G0021001.1 mouse_genomes_project 15 14382404 14468076 + MGP_CASTEiJ_P0040407 Cdh9 protein_coding protein_coding MGP_CASTEiJ_T0040408.1 MGP_CASTEiJ_G0021001.1 mouse_genomes_project 15 14437118 14467508 + MGP_CASTEiJ_P0040408 Cdh9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041245.1 MGP_CASTEiJ_G0021263.1 mouse_genomes_project 15 76811869 76813534 - MGP_CASTEiJ_P0041245 Foxh1 protein_coding protein_coding MGP_CASTEiJ_T0042655.1 MGP_CASTEiJ_G0021699.1 mouse_genomes_project 15 105474089 105496337 - MGP_CASTEiJ_P0042655 Itga5 protein_coding protein_coding MGP_CASTEiJ_T0011054.1 MGP_CASTEiJ_G0009242.1 mouse_genomes_project 15 34387690 34387945 + Gm25372 misc_RNA misc_RNA MGP_CASTEiJ_T0041784.1 MGP_CASTEiJ_G0021424.1 mouse_genomes_project 15 84278811 84290869 + MGP_CASTEiJ_P0041784 Tspo protein_coding protein_coding MGP_CASTEiJ_T0042148.1 MGP_CASTEiJ_G0021529.1 mouse_genomes_project 15 98283265 98283646 - MGP_CASTEiJ_P0042148 Gm8888 protein_coding protein_coding MGP_CASTEiJ_T0040777.1 MGP_CASTEiJ_G0021133.1 mouse_genomes_project 15 58035273 58079015 - MGP_CASTEiJ_P0040777 Tmem65 protein_coding protein_coding MGP_CASTEiJ_T0040937.1 MGP_CASTEiJ_G0021181.1 mouse_genomes_project 15 73580998 73595530 - MGP_CASTEiJ_P0040937 Gpr20 protein_coding protein_coding MGP_CASTEiJ_T0003475.1 MGP_CASTEiJ_G0003160.1 mouse_genomes_project 15 956810 960596 - Gm15632 antisense antisense MGP_CASTEiJ_T0099468.1 MGP_CASTEiJ_G0036381.1 mouse_genomes_project 15 101572101 101572208 - Gm25897 snRNA snRNA MGP_CASTEiJ_T0102096.1 MGP_CASTEiJ_G0038821.1 mouse_genomes_project 15 100133091 100133329 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0009762.1 MGP_CASTEiJ_G0007950.1 mouse_genomes_project 15 4935516 4935596 + Gm27506 miRNA miRNA MGP_CASTEiJ_T0042495.1 MGP_CASTEiJ_G0021643.1 mouse_genomes_project 15 103715920 103725038 - MGP_CASTEiJ_P0042495 Krt71 protein_coding protein_coding MGP_CASTEiJ_T0100661.1 MGP_CASTEiJ_G0037574.1 mouse_genomes_project 15 21050447 21050579 + Gm24656 snoRNA snoRNA MGP_CASTEiJ_T0042152.1 MGP_CASTEiJ_G0021532.1 mouse_genomes_project 15 98788675 98946517 + MGP_CASTEiJ_P0042152 Pced1b protein_coding protein_coding MGP_CASTEiJ_T0041087.1 MGP_CASTEiJ_G0021231.1 mouse_genomes_project 15 76158283 76180845 - MGP_CASTEiJ_P0041087 Scrib protein_coding protein_coding MGP_CASTEiJ_T0041088.1 MGP_CASTEiJ_G0021231.1 mouse_genomes_project 15 76158283 76180875 - MGP_CASTEiJ_P0041088 Scrib protein_coding protein_coding MGP_CASTEiJ_T0041089.1 MGP_CASTEiJ_G0021231.1 mouse_genomes_project 15 76158283 76180845 - MGP_CASTEiJ_P0041089 Scrib protein_coding protein_coding MGP_CASTEiJ_T0041090.1 MGP_CASTEiJ_G0021231.1 mouse_genomes_project 15 76158283 76173819 - MGP_CASTEiJ_P0041090 Scrib protein_coding protein_coding MGP_CASTEiJ_T0041091.1 MGP_CASTEiJ_G0021231.1 mouse_genomes_project 15 76160067 76161909 - MGP_CASTEiJ_P0041091 Scrib protein_coding protein_coding MGP_CASTEiJ_T0041092.1 MGP_CASTEiJ_G0021231.1 mouse_genomes_project 15 76160330 76161909 - MGP_CASTEiJ_P0041092 Scrib protein_coding protein_coding MGP_CASTEiJ_T0009774.1 MGP_CASTEiJ_G0007962.1 mouse_genomes_project 15 35795025 35795151 - Gm23654 miRNA miRNA MGP_CASTEiJ_T0042477.1 MGP_CASTEiJ_G0021631.1 mouse_genomes_project 15 103280495 103302405 - MGP_CASTEiJ_P0042477 Krt80 protein_coding protein_coding MGP_CASTEiJ_T0000896.1 MGP_CASTEiJ_G0000835.1 mouse_genomes_project 15 9895313 9897596 - TEC TEC MGP_CASTEiJ_T0040367.1 MGP_CASTEiJ_G0020993.1 mouse_genomes_project 15 9334788 9409473 + MGP_CASTEiJ_P0040367 Zfr protein_coding protein_coding MGP_CASTEiJ_T0040368.1 MGP_CASTEiJ_G0020993.1 mouse_genomes_project 15 9334808 9367335 + MGP_CASTEiJ_P0040368 Zfr protein_coding protein_coding MGP_CASTEiJ_T0040369.1 MGP_CASTEiJ_G0020993.1 mouse_genomes_project 15 9334816 9359156 + MGP_CASTEiJ_P0040369 Zfr protein_coding protein_coding MGP_CASTEiJ_T0040370.1 MGP_CASTEiJ_G0020993.1 mouse_genomes_project 15 9334823 9340445 + Zfr protein_coding processed_transcript MGP_CASTEiJ_T0040371.1 MGP_CASTEiJ_G0020993.1 mouse_genomes_project 15 9380671 9388454 + MGP_CASTEiJ_P0040371 Zfr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040372.1 MGP_CASTEiJ_G0020993.1 mouse_genomes_project 15 9381625 9407791 + MGP_CASTEiJ_P0040372 Zfr protein_coding protein_coding MGP_CASTEiJ_T0040373.1 MGP_CASTEiJ_G0020993.1 mouse_genomes_project 15 9388392 9408255 + MGP_CASTEiJ_P0040373 Zfr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040374.1 MGP_CASTEiJ_G0020993.1 mouse_genomes_project 15 9392507 9394018 + Zfr protein_coding retained_intron MGP_CASTEiJ_T0040375.1 MGP_CASTEiJ_G0020993.1 mouse_genomes_project 15 9403897 9408255 + Zfr protein_coding processed_transcript MGP_CASTEiJ_T0040264.1 MGP_CASTEiJ_G0020963.1 mouse_genomes_project 15 4843706 5066097 - MGP_CASTEiJ_P0040264 Wdr70 protein_coding protein_coding MGP_CASTEiJ_T0040265.1 MGP_CASTEiJ_G0020963.1 mouse_genomes_project 15 5059931 5066031 - MGP_CASTEiJ_P0040265 Wdr70 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041558.1 MGP_CASTEiJ_G0021353.1 mouse_genomes_project 15 80542466 80571908 + MGP_CASTEiJ_P0041558 Tab1 protein_coding protein_coding MGP_CASTEiJ_T0009769.1 MGP_CASTEiJ_G0007957.1 mouse_genomes_project 15 27942748 27942822 - Mir3964 miRNA miRNA MGP_CASTEiJ_T0041665.1 MGP_CASTEiJ_G0021380.1 mouse_genomes_project 15 82422174 82429779 - protein_coding processed_transcript MGP_CASTEiJ_T0041779.1 MGP_CASTEiJ_G0021421.1 mouse_genomes_project 15 84190877 84224122 - MGP_CASTEiJ_P0041779 Ttll1 protein_coding protein_coding MGP_CASTEiJ_T0041780.1 MGP_CASTEiJ_G0021421.1 mouse_genomes_project 15 84214326 84224031 - MGP_CASTEiJ_P0041780 Ttll1 protein_coding protein_coding MGP_CASTEiJ_T0041781.1 MGP_CASTEiJ_G0021421.1 mouse_genomes_project 15 84217366 84224121 - Ttll1 protein_coding processed_transcript MGP_CASTEiJ_T0102090.1 MGP_CASTEiJ_G0038815.1 mouse_genomes_project 15 75320427 75334219 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102088.1 MGP_CASTEiJ_G0038813.1 mouse_genomes_project 15 75308659 75310774 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0040503.1 MGP_CASTEiJ_G0021034.1 mouse_genomes_project 15 32518430 32569360 + MGP_CASTEiJ_P0040503 Laptm4b protein_coding protein_coding MGP_CASTEiJ_T0042476.1 MGP_CASTEiJ_G0021630.1 mouse_genomes_project 15 103208990 103215594 + MGP_CASTEiJ_P0042476 Atg101 protein_coding protein_coding MGP_CASTEiJ_T0041866.1 MGP_CASTEiJ_G0021452.1 mouse_genomes_project 15 86691439 86696094 - MGP_CASTEiJ_P0041866 Cdpf1 protein_coding protein_coding MGP_CASTEiJ_T0041867.1 MGP_CASTEiJ_G0021452.1 mouse_genomes_project 15 86691667 86696052 - MGP_CASTEiJ_P0041867 Cdpf1 protein_coding protein_coding MGP_CASTEiJ_T0041868.1 MGP_CASTEiJ_G0021452.1 mouse_genomes_project 15 86691711 86696042 - MGP_CASTEiJ_P0041868 Cdpf1 protein_coding protein_coding MGP_CASTEiJ_T0041869.1 MGP_CASTEiJ_G0021452.1 mouse_genomes_project 15 86691714 86695488 - MGP_CASTEiJ_P0041869 Cdpf1 protein_coding protein_coding MGP_CASTEiJ_T0041870.1 MGP_CASTEiJ_G0021452.1 mouse_genomes_project 15 86691724 86696095 - MGP_CASTEiJ_P0041870 Cdpf1 protein_coding protein_coding MGP_CASTEiJ_T0041871.1 MGP_CASTEiJ_G0021452.1 mouse_genomes_project 15 86692711 86696057 - MGP_CASTEiJ_P0041871 Cdpf1 protein_coding protein_coding MGP_CASTEiJ_T0016726.1 MGP_CASTEiJ_G0014618.1 mouse_genomes_project 15 80124947 80127175 + Gm16575 processed_transcript processed_transcript MGP_CASTEiJ_T0042666.1 MGP_CASTEiJ_G0021702.1 mouse_genomes_project 15 105577865 105623337 + MGP_CASTEiJ_P0042666 Nckap1l protein_coding protein_coding MGP_CASTEiJ_T0040982.1 MGP_CASTEiJ_G0021197.1 mouse_genomes_project 15 74737342 74740411 - MGP_CASTEiJ_P0040982 Ly6k protein_coding protein_coding MGP_CASTEiJ_T0040983.1 MGP_CASTEiJ_G0021197.1 mouse_genomes_project 15 74737342 74739958 - MGP_CASTEiJ_P0040983 Ly6k protein_coding protein_coding MGP_CASTEiJ_T0101734.1 MGP_CASTEiJ_G0038542.1 mouse_genomes_project 15 63426123 63427945 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0042558.1 MGP_CASTEiJ_G0021671.1 mouse_genomes_project 15 104465595 104467684 + MGP_CASTEiJ_P0042558 Sp1 protein_coding protein_coding MGP_CASTEiJ_T0042559.1 MGP_CASTEiJ_G0021671.1 mouse_genomes_project 15 104465780 104493560 + MGP_CASTEiJ_P0042559 Sp1 protein_coding protein_coding MGP_CASTEiJ_T0042560.1 MGP_CASTEiJ_G0021671.1 mouse_genomes_project 15 104465785 104493560 + MGP_CASTEiJ_P0042560 Sp1 protein_coding protein_coding MGP_CASTEiJ_T0042561.1 MGP_CASTEiJ_G0021671.1 mouse_genomes_project 15 104465832 104497285 + MGP_CASTEiJ_P0042561 Sp1 protein_coding protein_coding MGP_CASTEiJ_T0042562.1 MGP_CASTEiJ_G0021671.1 mouse_genomes_project 15 104466208 104468066 + MGP_CASTEiJ_P0042562 Sp1 protein_coding protein_coding MGP_CASTEiJ_T0042563.1 MGP_CASTEiJ_G0021671.1 mouse_genomes_project 15 104466718 104467684 + MGP_CASTEiJ_P0042563 Sp1 protein_coding protein_coding MGP_CASTEiJ_T0042564.1 MGP_CASTEiJ_G0021671.1 mouse_genomes_project 15 104467037 104467834 + MGP_CASTEiJ_P0042564 Sp1 protein_coding protein_coding MGP_CASTEiJ_T0042565.1 MGP_CASTEiJ_G0021671.1 mouse_genomes_project 15 104490614 104491543 + Sp1 protein_coding processed_transcript MGP_CASTEiJ_T0100696.1 MGP_CASTEiJ_G0037609.1 mouse_genomes_project 15 99660436 99660565 + Gm25668 snoRNA snoRNA MGP_CASTEiJ_T0042284.1 MGP_CASTEiJ_G0021573.1 mouse_genomes_project 15 100574396 100589778 - MGP_CASTEiJ_P0042284 Lmbr1l protein_coding protein_coding MGP_CASTEiJ_T0042285.1 MGP_CASTEiJ_G0021573.1 mouse_genomes_project 15 100576641 100579404 - Lmbr1l protein_coding processed_transcript MGP_CASTEiJ_T0042286.1 MGP_CASTEiJ_G0021573.1 mouse_genomes_project 15 100577644 100579716 - Lmbr1l protein_coding retained_intron MGP_CASTEiJ_T0042287.1 MGP_CASTEiJ_G0021573.1 mouse_genomes_project 15 100578348 100579913 - Lmbr1l protein_coding retained_intron MGP_CASTEiJ_T0042288.1 MGP_CASTEiJ_G0021573.1 mouse_genomes_project 15 100583919 100589912 - Lmbr1l protein_coding processed_transcript MGP_CASTEiJ_T0042289.1 MGP_CASTEiJ_G0021573.1 mouse_genomes_project 15 100585564 100589607 - Lmbr1l protein_coding processed_transcript MGP_CASTEiJ_T0040245.1 MGP_CASTEiJ_G0020958.1 mouse_genomes_project 15 3641895 3735268 + MGP_CASTEiJ_P0040245 Rictor protein_coding unknown_likely_coding MGP_CASTEiJ_T0040246.1 MGP_CASTEiJ_G0020958.1 mouse_genomes_project 15 3642010 3742869 + MGP_CASTEiJ_P0040246 Rictor protein_coding protein_coding MGP_CASTEiJ_T0040766.1 MGP_CASTEiJ_G0021126.1 mouse_genomes_project 15 57287889 57337049 - MGP_CASTEiJ_P0040766 Atad2 protein_coding protein_coding MGP_CASTEiJ_T0040767.1 MGP_CASTEiJ_G0021126.1 mouse_genomes_project 15 57292481 57337164 - MGP_CASTEiJ_P0040767 Atad2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042603.1 MGP_CASTEiJ_G0021680.1 mouse_genomes_project 15 104593555 104703307 - MGP_CASTEiJ_P0042603 protein_coding protein_coding MGP_CASTEiJ_T0042604.1 MGP_CASTEiJ_G0021680.1 mouse_genomes_project 15 104596254 104596644 - MGP_CASTEiJ_P0042604 protein_coding protein_coding MGP_CASTEiJ_T0042605.1 MGP_CASTEiJ_G0021680.1 mouse_genomes_project 15 104596254 104703684 - MGP_CASTEiJ_P0042605 protein_coding protein_coding MGP_CASTEiJ_T0042606.1 MGP_CASTEiJ_G0021680.1 mouse_genomes_project 15 104601187 104703673 - MGP_CASTEiJ_P0042606 protein_coding protein_coding MGP_CASTEiJ_T0042607.1 MGP_CASTEiJ_G0021680.1 mouse_genomes_project 15 104604272 104703687 - MGP_CASTEiJ_P0042607 protein_coding protein_coding MGP_CASTEiJ_T0042608.1 MGP_CASTEiJ_G0021680.1 mouse_genomes_project 15 104604964 104703322 - MGP_CASTEiJ_P0042608 protein_coding protein_coding MGP_CASTEiJ_T0042609.1 MGP_CASTEiJ_G0021680.1 mouse_genomes_project 15 104613076 104703672 - protein_coding retained_intron MGP_CASTEiJ_T0042610.1 MGP_CASTEiJ_G0021680.1 mouse_genomes_project 15 104615143 104703698 - MGP_CASTEiJ_P0042610 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042611.1 MGP_CASTEiJ_G0021680.1 mouse_genomes_project 15 104615195 104703156 - MGP_CASTEiJ_P0042611 protein_coding protein_coding MGP_CASTEiJ_T0042612.1 MGP_CASTEiJ_G0021680.1 mouse_genomes_project 15 104617341 104703301 - MGP_CASTEiJ_P0042612 protein_coding protein_coding MGP_CASTEiJ_T0042613.1 MGP_CASTEiJ_G0021680.1 mouse_genomes_project 15 104617341 104703680 - MGP_CASTEiJ_P0042613 protein_coding protein_coding MGP_CASTEiJ_T0042614.1 MGP_CASTEiJ_G0021680.1 mouse_genomes_project 15 104631263 104703304 - protein_coding retained_intron MGP_CASTEiJ_T0042615.1 MGP_CASTEiJ_G0021680.1 mouse_genomes_project 15 104662415 104703698 - protein_coding retained_intron MGP_CASTEiJ_T0040685.1 MGP_CASTEiJ_G0021099.1 mouse_genomes_project 15 51278761 51319924 + MGP_CASTEiJ_P0040685 Slc30a8 protein_coding protein_coding MGP_CASTEiJ_T0041288.1 MGP_CASTEiJ_G0021275.1 mouse_genomes_project 15 77062544 77076836 - MGP_CASTEiJ_P0041288 Zfp647 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042153.1 MGP_CASTEiJ_G0021533.1 mouse_genomes_project 15 99245429 99276659 - MGP_CASTEiJ_P0042153 Rpap3 protein_coding protein_coding MGP_CASTEiJ_T0042154.1 MGP_CASTEiJ_G0021533.1 mouse_genomes_project 15 99253915 99276679 - MGP_CASTEiJ_P0042154 Rpap3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099467.1 MGP_CASTEiJ_G0036380.1 mouse_genomes_project 15 101088035 101088142 - Gm22951 snRNA snRNA MGP_CASTEiJ_T0041873.1 MGP_CASTEiJ_G0021454.1 mouse_genomes_project 15 86718523 86749298 + MGP_CASTEiJ_P0041873 Ttc38 protein_coding protein_coding MGP_CASTEiJ_T0041874.1 MGP_CASTEiJ_G0021454.1 mouse_genomes_project 15 86718561 86748208 + Ttc38 protein_coding processed_transcript MGP_CASTEiJ_T0041875.1 MGP_CASTEiJ_G0021454.1 mouse_genomes_project 15 86718561 86731817 + MGP_CASTEiJ_P0041875 Ttc38 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042490.1 MGP_CASTEiJ_G0021638.1 mouse_genomes_project 15 103508503 103519023 - MGP_CASTEiJ_P0042490 Krt82 protein_coding protein_coding MGP_CASTEiJ_T0100671.1 MGP_CASTEiJ_G0037584.1 mouse_genomes_project 15 32738575 32738707 - Gm24523 snoRNA snoRNA MGP_CASTEiJ_T0042499.1 MGP_CASTEiJ_G0021646.1 mouse_genomes_project 15 103777377 103786404 - MGP_CASTEiJ_P0042499 Krt73 protein_coding protein_coding MGP_CASTEiJ_T0041311.1 MGP_CASTEiJ_G0021285.1 mouse_genomes_project 15 77669926 77712958 + MGP_CASTEiJ_P0041311 protein_coding protein_coding MGP_CASTEiJ_T0041312.1 MGP_CASTEiJ_G0021285.1 mouse_genomes_project 15 77669926 77712958 + MGP_CASTEiJ_P0041312 protein_coding protein_coding MGP_CASTEiJ_T0041316.1 MGP_CASTEiJ_G0021285.1 mouse_genomes_project 15 77696853 77709783 + MGP_CASTEiJ_P0041316 protein_coding protein_coding MGP_CASTEiJ_T0041317.1 MGP_CASTEiJ_G0021285.1 mouse_genomes_project 15 77696853 77712930 + MGP_CASTEiJ_P0041317 protein_coding protein_coding MGP_CASTEiJ_T0041240.1 MGP_CASTEiJ_G0021261.1 mouse_genomes_project 15 76787147 76803843 - MGP_CASTEiJ_P0041240 Cyhr1 protein_coding protein_coding MGP_CASTEiJ_T0041241.1 MGP_CASTEiJ_G0021261.1 mouse_genomes_project 15 76790678 76800700 - MGP_CASTEiJ_P0041241 Cyhr1 protein_coding protein_coding MGP_CASTEiJ_T0041242.1 MGP_CASTEiJ_G0021261.1 mouse_genomes_project 15 76801920 76803899 - MGP_CASTEiJ_P0041242 Cyhr1 protein_coding protein_coding MGP_CASTEiJ_T0041243.1 MGP_CASTEiJ_G0021261.1 mouse_genomes_project 15 76801924 76803890 - MGP_CASTEiJ_P0041243 Cyhr1 protein_coding protein_coding MGP_CASTEiJ_T0102083.1 MGP_CASTEiJ_G0038808.1 mouse_genomes_project 15 74881120 74881977 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0042006.1 MGP_CASTEiJ_G0021486.1 mouse_genomes_project 15 90449778 90451963 - MGP_CASTEiJ_P0042006 Sco2 protein_coding protein_coding MGP_CASTEiJ_T0006609.1 MGP_CASTEiJ_G0005468.1 mouse_genomes_project 15 82344953 82346782 - Gm17597 lincRNA lincRNA MGP_CASTEiJ_T0012725.1 MGP_CASTEiJ_G0010888.1 mouse_genomes_project 15 84779633 84779969 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0042055.1 MGP_CASTEiJ_G0021500.1 mouse_genomes_project 15 91346982 91353191 + MGP_CASTEiJ_P0042055 Alg10b protein_coding protein_coding MGP_CASTEiJ_T0099446.1 MGP_CASTEiJ_G0036359.1 mouse_genomes_project 15 65243435 65243624 + Gm23907 snRNA snRNA MGP_CASTEiJ_T0012729.1 MGP_CASTEiJ_G0010892.1 mouse_genomes_project 15 91696110 91696593 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0041672.1 MGP_CASTEiJ_G0021382.1 mouse_genomes_project 15 82478058 82491241 - MGP_CASTEiJ_P0041672 Polr3h protein_coding protein_coding MGP_CASTEiJ_T0042294.1 MGP_CASTEiJ_G0021577.1 mouse_genomes_project 15 100771039 100782374 + MGP_CASTEiJ_P0042294 Troap protein_coding protein_coding MGP_CASTEiJ_T0040662.1 MGP_CASTEiJ_G0021093.1 mouse_genomes_project 15 46313191 47618583 - MGP_CASTEiJ_P0040662 Csmd3 protein_coding protein_coding MGP_CASTEiJ_T0040663.1 MGP_CASTEiJ_G0021093.1 mouse_genomes_project 15 46313192 47618639 - MGP_CASTEiJ_P0040663 Csmd3 protein_coding protein_coding MGP_CASTEiJ_T0040664.1 MGP_CASTEiJ_G0021093.1 mouse_genomes_project 15 46313277 47618713 - MGP_CASTEiJ_P0040664 Csmd3 protein_coding protein_coding MGP_CASTEiJ_T0040665.1 MGP_CASTEiJ_G0021093.1 mouse_genomes_project 15 46314266 46779012 - MGP_CASTEiJ_P0040665 Csmd3 protein_coding protein_coding MGP_CASTEiJ_T0040666.1 MGP_CASTEiJ_G0021093.1 mouse_genomes_project 15 46314269 46350392 - Csmd3 protein_coding retained_intron MGP_CASTEiJ_T0040667.1 MGP_CASTEiJ_G0021093.1 mouse_genomes_project 15 46367762 46372716 - Csmd3 protein_coding retained_intron MGP_CASTEiJ_T0040668.1 MGP_CASTEiJ_G0021093.1 mouse_genomes_project 15 46720057 46734134 - Csmd3 protein_coding retained_intron MGP_CASTEiJ_T0040669.1 MGP_CASTEiJ_G0021093.1 mouse_genomes_project 15 47048075 47618639 - Csmd3 protein_coding processed_transcript MGP_CASTEiJ_T0040670.1 MGP_CASTEiJ_G0021093.1 mouse_genomes_project 15 47075968 47618639 - Csmd3 protein_coding retained_intron MGP_CASTEiJ_T0041734.1 MGP_CASTEiJ_G0021406.1 mouse_genomes_project 15 83155925 83161377 + MGP_CASTEiJ_P0041734 Cyp2d12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041735.1 MGP_CASTEiJ_G0021406.1 mouse_genomes_project 15 83156093 83161377 + MGP_CASTEiJ_P0041735 Cyp2d12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0098523.1 MGP_CASTEiJ_G0035454.1 mouse_genomes_project 15 102333624 102333734 + n-R5s43 rRNA rRNA MGP_CASTEiJ_T0009803.1 MGP_CASTEiJ_G0007991.1 mouse_genomes_project 15 83072970 83073030 + Gm27331 miRNA miRNA MGP_CASTEiJ_T0099444.1 MGP_CASTEiJ_G0036357.1 mouse_genomes_project 15 62915535 62915598 - Gm25702 snRNA snRNA MGP_CASTEiJ_T0098518.1 MGP_CASTEiJ_G0035449.1 mouse_genomes_project 15 37566574 37566682 - n-R5s39 rRNA rRNA MGP_CASTEiJ_T0041289.1 MGP_CASTEiJ_G0021276.1 mouse_genomes_project 15 77110191 77113474 + MGP_CASTEiJ_P0041289 1110038F14Rik protein_coding protein_coding MGP_CASTEiJ_T0011050.1 MGP_CASTEiJ_G0009238.1 mouse_genomes_project 15 3442977 3443253 + Gm23218 misc_RNA misc_RNA MGP_CASTEiJ_T0006566.1 MGP_CASTEiJ_G0005440.1 mouse_genomes_project 15 9171086 9176217 + 1700047G03Rik lincRNA lincRNA MGP_CASTEiJ_T0006567.1 MGP_CASTEiJ_G0005440.1 mouse_genomes_project 15 9171147 9176829 + 1700047G03Rik lincRNA lincRNA MGP_CASTEiJ_T0006568.1 MGP_CASTEiJ_G0005440.1 mouse_genomes_project 15 9171234 9176248 + 1700047G03Rik lincRNA lincRNA MGP_CASTEiJ_T0006569.1 MGP_CASTEiJ_G0005440.1 mouse_genomes_project 15 9173805 9176814 + 1700047G03Rik lincRNA lincRNA MGP_CASTEiJ_T0040428.1 MGP_CASTEiJ_G0021009.1 mouse_genomes_project 15 23612337 23828022 + MGP_CASTEiJ_P0040428 Myo10 protein_coding protein_coding MGP_CASTEiJ_T0040429.1 MGP_CASTEiJ_G0021009.1 mouse_genomes_project 15 23612355 23792224 + MGP_CASTEiJ_P0040429 Myo10 protein_coding protein_coding MGP_CASTEiJ_T0040430.1 MGP_CASTEiJ_G0021009.1 mouse_genomes_project 15 23612361 23704427 + Myo10 protein_coding retained_intron MGP_CASTEiJ_T0040431.1 MGP_CASTEiJ_G0021009.1 mouse_genomes_project 15 23672091 23726611 + Myo10 protein_coding processed_transcript MGP_CASTEiJ_T0040432.1 MGP_CASTEiJ_G0021009.1 mouse_genomes_project 15 23716328 23726662 + Myo10 protein_coding retained_intron MGP_CASTEiJ_T0040433.1 MGP_CASTEiJ_G0021009.1 mouse_genomes_project 15 23749931 23793660 + MGP_CASTEiJ_P0040433 Myo10 protein_coding protein_coding MGP_CASTEiJ_T0040434.1 MGP_CASTEiJ_G0021009.1 mouse_genomes_project 15 23764259 23792234 + MGP_CASTEiJ_P0040434 Myo10 protein_coding protein_coding MGP_CASTEiJ_T0040435.1 MGP_CASTEiJ_G0021009.1 mouse_genomes_project 15 23770039 23788540 + MGP_CASTEiJ_P0040435 Myo10 protein_coding protein_coding MGP_CASTEiJ_T0040436.1 MGP_CASTEiJ_G0021009.1 mouse_genomes_project 15 23770059 23792867 + MGP_CASTEiJ_P0040436 Myo10 protein_coding protein_coding MGP_CASTEiJ_T0040437.1 MGP_CASTEiJ_G0021009.1 mouse_genomes_project 15 23780010 23788793 + MGP_CASTEiJ_P0040437 Myo10 protein_coding protein_coding MGP_CASTEiJ_T0040438.1 MGP_CASTEiJ_G0021009.1 mouse_genomes_project 15 23786432 23793523 + MGP_CASTEiJ_P0040438 Myo10 protein_coding protein_coding MGP_CASTEiJ_T0040439.1 MGP_CASTEiJ_G0021009.1 mouse_genomes_project 15 23786751 23828028 + MGP_CASTEiJ_P0040439 Myo10 protein_coding protein_coding MGP_CASTEiJ_T0040440.1 MGP_CASTEiJ_G0021009.1 mouse_genomes_project 15 23792647 23793834 + Myo10 protein_coding retained_intron MGP_CASTEiJ_T0042227.1 MGP_CASTEiJ_G0021550.1 mouse_genomes_project 15 100001822 100002924 - MGP_CASTEiJ_P0042227 Olfr283 protein_coding protein_coding MGP_CASTEiJ_T0041343.1 MGP_CASTEiJ_G0021295.1 mouse_genomes_project 15 78357392 78373575 - MGP_CASTEiJ_P0041343 Ift27 protein_coding protein_coding MGP_CASTEiJ_T0000906.1 MGP_CASTEiJ_G0000845.1 mouse_genomes_project 15 93739917 93742810 + TEC TEC MGP_CASTEiJ_T0042144.1 MGP_CASTEiJ_G0021527.1 mouse_genomes_project 15 98074463 98147628 - MGP_CASTEiJ_P0042144 Slc38a1 protein_coding protein_coding MGP_CASTEiJ_T0042145.1 MGP_CASTEiJ_G0021527.1 mouse_genomes_project 15 98074463 98149276 - MGP_CASTEiJ_P0042145 Slc38a1 protein_coding protein_coding MGP_CASTEiJ_T0042146.1 MGP_CASTEiJ_G0021527.1 mouse_genomes_project 15 98074463 98147247 - MGP_CASTEiJ_P0042146 Slc38a1 protein_coding protein_coding MGP_CASTEiJ_T0041814.1 MGP_CASTEiJ_G0021430.1 mouse_genomes_project 15 84867406 84877938 - MGP_CASTEiJ_P0041814 Pnpla5 protein_coding protein_coding MGP_CASTEiJ_T0098842.1 MGP_CASTEiJ_G0035769.1 mouse_genomes_project 15 96490739 96564106 - 1700129L04Rik sense_intronic sense_intronic MGP_CASTEiJ_T0098843.1 MGP_CASTEiJ_G0035769.1 mouse_genomes_project 15 96490813 96549187 - 1700129L04Rik sense_intronic sense_intronic MGP_CASTEiJ_T0099451.1 MGP_CASTEiJ_G0036364.1 mouse_genomes_project 15 76147077 76147235 + Gm23027 snRNA snRNA MGP_CASTEiJ_T0012722.1 MGP_CASTEiJ_G0010885.1 mouse_genomes_project 15 81423765 81424164 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0041848.1 MGP_CASTEiJ_G0021443.1 mouse_genomes_project 15 85820909 85842973 + MGP_CASTEiJ_P0041848 Upk3a protein_coding unknown_likely_coding MGP_CASTEiJ_T0040899.1 MGP_CASTEiJ_G0021171.1 mouse_genomes_project 15 68553555 68714794 + MGP_CASTEiJ_P0040899 Khdrbs3 protein_coding protein_coding MGP_CASTEiJ_T0040900.1 MGP_CASTEiJ_G0021171.1 mouse_genomes_project 15 68554344 68714391 + MGP_CASTEiJ_P0040900 Khdrbs3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009829.1 MGP_CASTEiJ_G0008017.1 mouse_genomes_project 15 103883679 103883790 + Gm44356 miRNA miRNA MGP_CASTEiJ_T0099464.1 MGP_CASTEiJ_G0036377.1 mouse_genomes_project 15 94645303 94645408 + Gm26371 snRNA snRNA MGP_CASTEiJ_T0040695.1 MGP_CASTEiJ_G0021103.1 mouse_genomes_project 15 52926298 52927986 + MGP_CASTEiJ_P0040695 Gm7489 protein_coding protein_coding MGP_CASTEiJ_T0041044.1 MGP_CASTEiJ_G0021219.1 mouse_genomes_project 15 75988831 75993459 - MGP_CASTEiJ_P0041044 Mroh6 protein_coding protein_coding MGP_CASTEiJ_T0040735.1 MGP_CASTEiJ_G0021118.1 mouse_genomes_project 15 56386964 56416559 - MGP_CASTEiJ_P0040735 Slc22a22 protein_coding protein_coding MGP_CASTEiJ_T0040736.1 MGP_CASTEiJ_G0021118.1 mouse_genomes_project 15 56386968 56617585 - MGP_CASTEiJ_P0040736 Slc22a22 protein_coding protein_coding MGP_CASTEiJ_T0040737.1 MGP_CASTEiJ_G0021118.1 mouse_genomes_project 15 56387229 56412760 - MGP_CASTEiJ_P0040737 Slc22a22 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040738.1 MGP_CASTEiJ_G0021118.1 mouse_genomes_project 15 56405136 56416535 - MGP_CASTEiJ_P0040738 Slc22a22 protein_coding protein_coding MGP_CASTEiJ_T0041011.1 MGP_CASTEiJ_G0021205.1 mouse_genomes_project 15 75130091 75132519 + MGP_CASTEiJ_P0041011 protein_coding protein_coding MGP_CASTEiJ_T0041894.1 MGP_CASTEiJ_G0021459.1 mouse_genomes_project 15 87063994 87087369 - Cerk protein_coding retained_intron MGP_CASTEiJ_T0041895.1 MGP_CASTEiJ_G0021459.1 mouse_genomes_project 15 87063995 87121364 - MGP_CASTEiJ_P0041895 Cerk protein_coding protein_coding MGP_CASTEiJ_T0041896.1 MGP_CASTEiJ_G0021459.1 mouse_genomes_project 15 87065195 87077311 - MGP_CASTEiJ_P0041896 Cerk protein_coding protein_coding MGP_CASTEiJ_T0016724.1 MGP_CASTEiJ_G0014616.1 mouse_genomes_project 15 78315136 78342203 + A730060N03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0041747.1 MGP_CASTEiJ_G0021414.1 mouse_genomes_project 15 83751424 83765758 + Serhl protein_coding processed_transcript MGP_CASTEiJ_T0041748.1 MGP_CASTEiJ_G0021414.1 mouse_genomes_project 15 83754797 83765988 + MGP_CASTEiJ_P0041748 Serhl protein_coding protein_coding MGP_CASTEiJ_T0041749.1 MGP_CASTEiJ_G0021414.1 mouse_genomes_project 15 83761130 83766996 + Serhl protein_coding processed_transcript MGP_CASTEiJ_T0041750.1 MGP_CASTEiJ_G0021414.1 mouse_genomes_project 15 83764217 83767032 + Serhl protein_coding retained_intron MGP_CASTEiJ_T0041751.1 MGP_CASTEiJ_G0021414.1 mouse_genomes_project 15 83764243 83767057 + Serhl protein_coding retained_intron MGP_CASTEiJ_T0041752.1 MGP_CASTEiJ_G0021414.1 mouse_genomes_project 15 83764248 83766614 + MGP_CASTEiJ_P0041752 Serhl protein_coding protein_coding MGP_CASTEiJ_T0041753.1 MGP_CASTEiJ_G0021414.1 mouse_genomes_project 15 83764248 83781965 + MGP_CASTEiJ_P0041753 Serhl protein_coding protein_coding MGP_CASTEiJ_T0041754.1 MGP_CASTEiJ_G0021414.1 mouse_genomes_project 15 83764298 83781790 + MGP_CASTEiJ_P0041754 Serhl protein_coding protein_coding MGP_CASTEiJ_T0041755.1 MGP_CASTEiJ_G0021414.1 mouse_genomes_project 15 83765555 83767192 + Serhl protein_coding retained_intron MGP_CASTEiJ_T0041756.1 MGP_CASTEiJ_G0021414.1 mouse_genomes_project 15 83767673 83781269 + Serhl protein_coding retained_intron MGP_CASTEiJ_T0041757.1 MGP_CASTEiJ_G0021414.1 mouse_genomes_project 15 83767895 83772321 + Serhl protein_coding retained_intron MGP_CASTEiJ_T0041758.1 MGP_CASTEiJ_G0021414.1 mouse_genomes_project 15 83767897 83769771 + Serhl protein_coding retained_intron MGP_CASTEiJ_T0041759.1 MGP_CASTEiJ_G0021414.1 mouse_genomes_project 15 83768337 83780015 + MGP_CASTEiJ_P0041759 Serhl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041760.1 MGP_CASTEiJ_G0021414.1 mouse_genomes_project 15 83770551 83781965 + Serhl protein_coding processed_transcript MGP_CASTEiJ_T0041739.1 MGP_CASTEiJ_G0021409.1 mouse_genomes_project 15 83304423 83305786 - MGP_CASTEiJ_P0041739 Cyp2d37-ps protein_coding protein_coding MGP_CASTEiJ_T0042010.1 MGP_CASTEiJ_G0021489.1 mouse_genomes_project 15 90466156 90468197 + MGP_CASTEiJ_P0042010 Klhdc7b protein_coding protein_coding MGP_CASTEiJ_T0012732.1 MGP_CASTEiJ_G0010895.1 mouse_genomes_project 15 92727583 92729019 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0042297.1 MGP_CASTEiJ_G0021579.1 mouse_genomes_project 15 100792132 100799502 + Dnajc22 protein_coding processed_transcript MGP_CASTEiJ_T0042298.1 MGP_CASTEiJ_G0021579.1 mouse_genomes_project 15 100797993 100803326 + MGP_CASTEiJ_P0042298 Dnajc22 protein_coding protein_coding MGP_CASTEiJ_T0000904.1 MGP_CASTEiJ_G0000843.1 mouse_genomes_project 15 82109924 82110779 - TEC TEC MGP_CASTEiJ_T0042500.1 MGP_CASTEiJ_G0021647.1 mouse_genomes_project 15 103795197 103802650 - MGP_CASTEiJ_P0042500 Krt2 protein_coding protein_coding MGP_CASTEiJ_T0012735.1 MGP_CASTEiJ_G0010898.1 mouse_genomes_project 15 97153354 97155424 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099443.1 MGP_CASTEiJ_G0036356.1 mouse_genomes_project 15 59431551 59431658 + Gm25875 snRNA snRNA MGP_CASTEiJ_T0102094.1 MGP_CASTEiJ_G0038819.1 mouse_genomes_project 15 75400266 75405421 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0016722.1 MGP_CASTEiJ_G0014614.1 mouse_genomes_project 15 77576535 77577160 - Gm20688 processed_transcript processed_transcript MGP_CASTEiJ_T0042131.1 MGP_CASTEiJ_G0021521.1 mouse_genomes_project 15 97057761 97093422 - MGP_CASTEiJ_P0042131 Dbx2 protein_coding protein_coding MGP_CASTEiJ_T0041438.1 MGP_CASTEiJ_G0021325.1 mouse_genomes_project 15 79478848 79488605 + MGP_CASTEiJ_P0041438 Polr2f protein_coding protein_coding MGP_CASTEiJ_T0041068.1 MGP_CASTEiJ_G0021226.1 mouse_genomes_project 15 76076043 76085107 + MGP_CASTEiJ_P0041068 Zfp707 protein_coding protein_coding MGP_CASTEiJ_T0041069.1 MGP_CASTEiJ_G0021226.1 mouse_genomes_project 15 76076078 76085227 + Zfp707 protein_coding retained_intron MGP_CASTEiJ_T0041070.1 MGP_CASTEiJ_G0021226.1 mouse_genomes_project 15 76076099 76085104 + MGP_CASTEiJ_P0041070 Zfp707 protein_coding protein_coding MGP_CASTEiJ_T0041071.1 MGP_CASTEiJ_G0021226.1 mouse_genomes_project 15 76076227 76085102 + MGP_CASTEiJ_P0041071 Zfp707 protein_coding protein_coding MGP_CASTEiJ_T0041072.1 MGP_CASTEiJ_G0021226.1 mouse_genomes_project 15 76076596 76084127 + MGP_CASTEiJ_P0041072 Zfp707 protein_coding protein_coding MGP_CASTEiJ_T0041073.1 MGP_CASTEiJ_G0021226.1 mouse_genomes_project 15 76081938 76083110 + Zfp707 protein_coding retained_intron MGP_CASTEiJ_T0042356.1 MGP_CASTEiJ_G0021594.1 mouse_genomes_project 15 101423682 101456164 + MGP_CASTEiJ_P0042356 Asic1 protein_coding protein_coding MGP_CASTEiJ_T0040491.1 MGP_CASTEiJ_G0021032.1 mouse_genomes_project 15 31978422 31982425 - MGP_CASTEiJ_P0040491 Tspyl5 protein_coding protein_coding MGP_CASTEiJ_T0012738.1 MGP_CASTEiJ_G0010901.1 mouse_genomes_project 15 101300648 101301802 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0041732.1 MGP_CASTEiJ_G0021404.1 mouse_genomes_project 15 82992691 83000953 - MGP_CASTEiJ_P0041732 Cyp2d11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041043.1 MGP_CASTEiJ_G0021218.1 mouse_genomes_project 15 75960295 75965325 + MGP_CASTEiJ_P0041043 Gsdmd protein_coding protein_coding MGP_CASTEiJ_T0003502.1 MGP_CASTEiJ_G0003180.1 mouse_genomes_project 15 79791434 79795833 + Gm16059 antisense antisense MGP_CASTEiJ_T0012718.1 MGP_CASTEiJ_G0010881.1 mouse_genomes_project 15 76946520 76946875 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016711.1 MGP_CASTEiJ_G0014608.1 mouse_genomes_project 15 60153334 60160639 + 9930014A18Rik processed_transcript antisense MGP_CASTEiJ_T0016712.1 MGP_CASTEiJ_G0014608.1 mouse_genomes_project 15 60154014 60156671 + 9930014A18Rik processed_transcript TEC MGP_CASTEiJ_T0016713.1 MGP_CASTEiJ_G0014608.1 mouse_genomes_project 15 60154463 60155001 + 9930014A18Rik processed_transcript antisense MGP_CASTEiJ_T0016714.1 MGP_CASTEiJ_G0014608.1 mouse_genomes_project 15 60155402 60163787 + 9930014A18Rik processed_transcript antisense MGP_CASTEiJ_T0009783.1 MGP_CASTEiJ_G0007971.1 mouse_genomes_project 15 67946091 67946187 - Mir30b miRNA miRNA MGP_CASTEiJ_T0040837.1 MGP_CASTEiJ_G0021158.1 mouse_genomes_project 15 65320734 65325042 + Efr3a protein_coding processed_transcript MGP_CASTEiJ_T0040838.1 MGP_CASTEiJ_G0021158.1 mouse_genomes_project 15 65320740 65400871 + MGP_CASTEiJ_P0040838 Efr3a protein_coding protein_coding MGP_CASTEiJ_T0040839.1 MGP_CASTEiJ_G0021158.1 mouse_genomes_project 15 65320741 65324525 + Efr3a protein_coding processed_transcript MGP_CASTEiJ_T0040840.1 MGP_CASTEiJ_G0021158.1 mouse_genomes_project 15 65320741 65396336 + MGP_CASTEiJ_P0040840 Efr3a protein_coding protein_coding MGP_CASTEiJ_T0040841.1 MGP_CASTEiJ_G0021158.1 mouse_genomes_project 15 65320742 65361392 + Efr3a protein_coding processed_transcript MGP_CASTEiJ_T0040842.1 MGP_CASTEiJ_G0021158.1 mouse_genomes_project 15 65320746 65357047 + MGP_CASTEiJ_P0040842 Efr3a protein_coding protein_coding MGP_CASTEiJ_T0040843.1 MGP_CASTEiJ_G0021158.1 mouse_genomes_project 15 65320748 65354112 + Efr3a protein_coding retained_intron MGP_CASTEiJ_T0040844.1 MGP_CASTEiJ_G0021158.1 mouse_genomes_project 15 65320748 65351460 + MGP_CASTEiJ_P0040844 Efr3a protein_coding protein_coding MGP_CASTEiJ_T0040845.1 MGP_CASTEiJ_G0021158.1 mouse_genomes_project 15 65321540 65324531 + Efr3a protein_coding processed_transcript MGP_CASTEiJ_T0040846.1 MGP_CASTEiJ_G0021158.1 mouse_genomes_project 15 65378496 65383963 + Efr3a protein_coding retained_intron MGP_CASTEiJ_T0040847.1 MGP_CASTEiJ_G0021158.1 mouse_genomes_project 15 65382613 65384867 + Efr3a protein_coding retained_intron MGP_CASTEiJ_T0040848.1 MGP_CASTEiJ_G0021158.1 mouse_genomes_project 15 65384638 65394249 + Efr3a protein_coding retained_intron MGP_CASTEiJ_T0098343.1 MGP_CASTEiJ_G0035274.1 mouse_genomes_project 15 76014438 76016819 + pseudogene pseudogene MGP_CASTEiJ_T0042503.1 MGP_CASTEiJ_G0021650.1 mouse_genomes_project 15 103879557 103888407 - MGP_CASTEiJ_P0042503 Krt76 protein_coding protein_coding MGP_CASTEiJ_T0009802.1 MGP_CASTEiJ_G0007990.1 mouse_genomes_project 15 82789566 82789635 + Mir33 miRNA miRNA MGP_CASTEiJ_T0042241.1 MGP_CASTEiJ_G0021556.1 mouse_genomes_project 15 100157208 100172693 - MGP_CASTEiJ_P0042241 Kansl2 protein_coding protein_coding MGP_CASTEiJ_T0042242.1 MGP_CASTEiJ_G0021556.1 mouse_genomes_project 15 100157488 100172670 - MGP_CASTEiJ_P0042242 Kansl2 protein_coding protein_coding MGP_CASTEiJ_T0009824.1 MGP_CASTEiJ_G0008012.1 mouse_genomes_project 15 103117638 103117701 + Mir6962 miRNA miRNA MGP_CASTEiJ_T0102084.1 MGP_CASTEiJ_G0038809.1 mouse_genomes_project 15 74910073 74910224 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0041320.1 MGP_CASTEiJ_G0021289.1 mouse_genomes_project 15 77918324 77923593 - MGP_CASTEiJ_P0041320 Apol8 protein_coding protein_coding MGP_CASTEiJ_T0041321.1 MGP_CASTEiJ_G0021289.1 mouse_genomes_project 15 77919138 77925752 - MGP_CASTEiJ_P0041321 Apol8 protein_coding protein_coding MGP_CASTEiJ_T0003488.1 MGP_CASTEiJ_G0003171.1 mouse_genomes_project 15 65810142 65813451 + Gm27242 antisense antisense MGP_CASTEiJ_T0100680.1 MGP_CASTEiJ_G0037593.1 mouse_genomes_project 15 51494033 51494165 + Gm23267 snoRNA snoRNA MGP_CASTEiJ_T0040354.1 MGP_CASTEiJ_G0020986.1 mouse_genomes_project 15 8113325 8131926 + MGP_CASTEiJ_P0040354 Amacr protein_coding protein_coding MGP_CASTEiJ_T0041574.1 MGP_CASTEiJ_G0021362.1 mouse_genomes_project 15 81164365 81402258 + MGP_CASTEiJ_P0041574 Tnrc6b protein_coding unknown_likely_coding MGP_CASTEiJ_T0041575.1 MGP_CASTEiJ_G0021362.1 mouse_genomes_project 15 81164501 81409836 + MGP_CASTEiJ_P0041575 Tnrc6b protein_coding protein_coding MGP_CASTEiJ_T0006606.1 MGP_CASTEiJ_G0005465.1 mouse_genomes_project 15 79180634 79184612 - Gm26634 lincRNA lincRNA MGP_CASTEiJ_T0041128.1 MGP_CASTEiJ_G0021239.1 mouse_genomes_project 15 76422578 76425041 + MGP_CASTEiJ_P0041128 Smpd5 protein_coding protein_coding MGP_CASTEiJ_T0041129.1 MGP_CASTEiJ_G0021239.1 mouse_genomes_project 15 76423112 76424397 + MGP_CASTEiJ_P0041129 Smpd5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041130.1 MGP_CASTEiJ_G0021239.1 mouse_genomes_project 15 76423395 76425038 + Smpd5 protein_coding retained_intron MGP_CASTEiJ_T0041131.1 MGP_CASTEiJ_G0021239.1 mouse_genomes_project 15 76423453 76424018 + Smpd5 protein_coding retained_intron MGP_CASTEiJ_T0099425.1 MGP_CASTEiJ_G0036338.1 mouse_genomes_project 15 21569265 21569423 - Gm23980 snRNA snRNA MGP_CASTEiJ_T0003508.1 MGP_CASTEiJ_G0003186.1 mouse_genomes_project 15 90576055 90584606 + C230037L18Rik antisense antisense MGP_CASTEiJ_T0003509.1 MGP_CASTEiJ_G0003186.1 mouse_genomes_project 15 90576071 90577730 + C230037L18Rik antisense antisense MGP_CASTEiJ_T0003510.1 MGP_CASTEiJ_G0003186.1 mouse_genomes_project 15 90577555 90584541 + C230037L18Rik antisense antisense MGP_CASTEiJ_T0040721.1 MGP_CASTEiJ_G0021114.1 mouse_genomes_project 15 54638071 54661570 - MGP_CASTEiJ_P0040721 Mrpl13 protein_coding protein_coding MGP_CASTEiJ_T0040722.1 MGP_CASTEiJ_G0021114.1 mouse_genomes_project 15 54638071 54661171 - MGP_CASTEiJ_P0040722 Mrpl13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040723.1 MGP_CASTEiJ_G0021114.1 mouse_genomes_project 15 54642622 54652139 - MGP_CASTEiJ_P0040723 Mrpl13 protein_coding protein_coding MGP_CASTEiJ_T0040724.1 MGP_CASTEiJ_G0021114.1 mouse_genomes_project 15 54646855 54661105 - Mrpl13 protein_coding retained_intron MGP_CASTEiJ_T0040725.1 MGP_CASTEiJ_G0021114.1 mouse_genomes_project 15 54653459 54661097 - Mrpl13 protein_coding retained_intron MGP_CASTEiJ_T0041473.1 MGP_CASTEiJ_G0021332.1 mouse_genomes_project 15 79720718 79767745 - MGP_CASTEiJ_P0041473 Tmem184b protein_coding unknown_likely_coding MGP_CASTEiJ_T0041474.1 MGP_CASTEiJ_G0021332.1 mouse_genomes_project 15 79722110 79767770 - MGP_CASTEiJ_P0041474 Tmem184b protein_coding protein_coding MGP_CASTEiJ_T0041475.1 MGP_CASTEiJ_G0021332.1 mouse_genomes_project 15 79722110 79767386 - MGP_CASTEiJ_P0041475 Tmem184b protein_coding protein_coding MGP_CASTEiJ_T0009815.1 MGP_CASTEiJ_G0008003.1 mouse_genomes_project 15 88778277 88778371 - Mir6393 miRNA miRNA MGP_CASTEiJ_T0041942.1 MGP_CASTEiJ_G0021474.1 mouse_genomes_project 15 90154573 90179271 - MGP_CASTEiJ_P0041942 Tubgcp6 protein_coding protein_coding MGP_CASTEiJ_T0041943.1 MGP_CASTEiJ_G0021474.1 mouse_genomes_project 15 90155314 90157315 - Tubgcp6 protein_coding retained_intron MGP_CASTEiJ_T0041944.1 MGP_CASTEiJ_G0021474.1 mouse_genomes_project 15 90156626 90158820 - MGP_CASTEiJ_P0041944 Tubgcp6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041945.1 MGP_CASTEiJ_G0021474.1 mouse_genomes_project 15 90156626 90179070 - MGP_CASTEiJ_P0041945 Tubgcp6 protein_coding protein_coding MGP_CASTEiJ_T0041946.1 MGP_CASTEiJ_G0021474.1 mouse_genomes_project 15 90156650 90157760 - Tubgcp6 protein_coding retained_intron MGP_CASTEiJ_T0041947.1 MGP_CASTEiJ_G0021474.1 mouse_genomes_project 15 90156909 90157496 - Tubgcp6 protein_coding retained_intron MGP_CASTEiJ_T0041948.1 MGP_CASTEiJ_G0021474.1 mouse_genomes_project 15 90156933 90158231 - MGP_CASTEiJ_P0041948 Tubgcp6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041949.1 MGP_CASTEiJ_G0021474.1 mouse_genomes_project 15 90157228 90158397 - Tubgcp6 protein_coding retained_intron MGP_CASTEiJ_T0041950.1 MGP_CASTEiJ_G0021474.1 mouse_genomes_project 15 90157692 90158589 - MGP_CASTEiJ_P0041950 Tubgcp6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041951.1 MGP_CASTEiJ_G0021474.1 mouse_genomes_project 15 90160432 90163646 - MGP_CASTEiJ_P0041951 Tubgcp6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041554.1 MGP_CASTEiJ_G0021352.1 mouse_genomes_project 15 80496731 80521535 + MGP_CASTEiJ_P0041554 Syngr1 protein_coding protein_coding MGP_CASTEiJ_T0041555.1 MGP_CASTEiJ_G0021352.1 mouse_genomes_project 15 80496741 80527623 + MGP_CASTEiJ_P0041555 Syngr1 protein_coding protein_coding MGP_CASTEiJ_T0041556.1 MGP_CASTEiJ_G0021352.1 mouse_genomes_project 15 80504638 80519769 + MGP_CASTEiJ_P0041556 Syngr1 protein_coding protein_coding MGP_CASTEiJ_T0041557.1 MGP_CASTEiJ_G0021352.1 mouse_genomes_project 15 80523570 80524363 + MGP_CASTEiJ_P0041557 Syngr1 protein_coding protein_coding MGP_CASTEiJ_T0040585.1 MGP_CASTEiJ_G0021061.1 mouse_genomes_project 15 35854067 35871195 + MGP_CASTEiJ_P0040585 4930447A16Rik protein_coding protein_coding MGP_CASTEiJ_T0100695.1 MGP_CASTEiJ_G0037608.1 mouse_genomes_project 15 96374263 96374395 - Gm23129 snoRNA snoRNA MGP_CASTEiJ_T0009821.1 MGP_CASTEiJ_G0008009.1 mouse_genomes_project 15 100158147 100158263 - Mir1291 miRNA miRNA MGP_CASTEiJ_T0040929.1 MGP_CASTEiJ_G0021180.1 mouse_genomes_project 15 73461336 73489316 - MGP_CASTEiJ_P0040929 Slc45a4 protein_coding protein_coding MGP_CASTEiJ_T0040930.1 MGP_CASTEiJ_G0021180.1 mouse_genomes_project 15 73461346 73508516 - MGP_CASTEiJ_P0040930 Slc45a4 protein_coding protein_coding MGP_CASTEiJ_T0040931.1 MGP_CASTEiJ_G0021180.1 mouse_genomes_project 15 73464213 73501199 - MGP_CASTEiJ_P0040931 Slc45a4 protein_coding protein_coding MGP_CASTEiJ_T0040932.1 MGP_CASTEiJ_G0021180.1 mouse_genomes_project 15 73464213 73489302 - MGP_CASTEiJ_P0040932 Slc45a4 protein_coding protein_coding MGP_CASTEiJ_T0040933.1 MGP_CASTEiJ_G0021180.1 mouse_genomes_project 15 73464216 73508516 - MGP_CASTEiJ_P0040933 Slc45a4 protein_coding protein_coding MGP_CASTEiJ_T0040934.1 MGP_CASTEiJ_G0021180.1 mouse_genomes_project 15 73470822 73472886 - MGP_CASTEiJ_P0040934 Slc45a4 protein_coding protein_coding MGP_CASTEiJ_T0040935.1 MGP_CASTEiJ_G0021180.1 mouse_genomes_project 15 73489427 73531242 - MGP_CASTEiJ_P0040935 Slc45a4 protein_coding protein_coding MGP_CASTEiJ_T0040936.1 MGP_CASTEiJ_G0021180.1 mouse_genomes_project 15 73489782 73530825 - Slc45a4 protein_coding processed_transcript MGP_CASTEiJ_T0041613.1 MGP_CASTEiJ_G0021369.1 mouse_genomes_project 15 81856132 81895497 - MGP_CASTEiJ_P0041613 St13 protein_coding protein_coding MGP_CASTEiJ_T0041614.1 MGP_CASTEiJ_G0021369.1 mouse_genomes_project 15 81857902 81895048 - MGP_CASTEiJ_P0041614 St13 protein_coding protein_coding MGP_CASTEiJ_T0041615.1 MGP_CASTEiJ_G0021369.1 mouse_genomes_project 15 81870221 81894837 - MGP_CASTEiJ_P0041615 St13 protein_coding protein_coding MGP_CASTEiJ_T0041616.1 MGP_CASTEiJ_G0021369.1 mouse_genomes_project 15 81885077 81895531 - MGP_CASTEiJ_P0041616 St13 protein_coding protein_coding MGP_CASTEiJ_T0041617.1 MGP_CASTEiJ_G0021369.1 mouse_genomes_project 15 81887645 81895527 - MGP_CASTEiJ_P0041617 St13 protein_coding protein_coding MGP_CASTEiJ_T0041488.1 MGP_CASTEiJ_G0021336.1 mouse_genomes_project 15 79905091 79924096 - MGP_CASTEiJ_P0041488 Ddx17 protein_coding protein_coding MGP_CASTEiJ_T0009805.1 MGP_CASTEiJ_G0007993.1 mouse_genomes_project 15 83205901 83205968 - Gm27742 miRNA miRNA MGP_CASTEiJ_T0042014.1 MGP_CASTEiJ_G0021492.1 mouse_genomes_project 15 90502658 90516354 - MGP_CASTEiJ_P0042014 Cpt1b protein_coding protein_coding MGP_CASTEiJ_T0042015.1 MGP_CASTEiJ_G0021492.1 mouse_genomes_project 15 90506304 90510857 - MGP_CASTEiJ_P0042015 Cpt1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042016.1 MGP_CASTEiJ_G0021492.1 mouse_genomes_project 15 90514216 90514924 - Cpt1b protein_coding retained_intron MGP_CASTEiJ_T0042017.1 MGP_CASTEiJ_G0021492.1 mouse_genomes_project 15 90515086 90516286 - MGP_CASTEiJ_P0042017 Cpt1b protein_coding protein_coding MGP_CASTEiJ_T0006565.1 MGP_CASTEiJ_G0005439.1 mouse_genomes_project 15 7847792 7856893 + lincRNA lincRNA MGP_CASTEiJ_T0000902.1 MGP_CASTEiJ_G0000841.1 mouse_genomes_project 15 67928802 67934978 - TEC TEC MGP_CASTEiJ_T0041423.1 MGP_CASTEiJ_G0021322.1 mouse_genomes_project 15 79408423 79428709 + MGP_CASTEiJ_P0041423 Eif3l protein_coding protein_coding MGP_CASTEiJ_T0006639.1 MGP_CASTEiJ_G0005488.1 mouse_genomes_project 15 105040272 105043936 - Hotair lincRNA lincRNA MGP_CASTEiJ_T0041645.1 MGP_CASTEiJ_G0021375.1 mouse_genomes_project 15 82211948 82231030 - MGP_CASTEiJ_P0041645 Chadl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041648.1 MGP_CASTEiJ_G0021375.1 mouse_genomes_project 15 82221668 82234318 - MGP_CASTEiJ_P0041648 Chadl protein_coding protein_coding MGP_CASTEiJ_T0041649.1 MGP_CASTEiJ_G0021375.1 mouse_genomes_project 15 82221684 82231209 - MGP_CASTEiJ_P0041649 Chadl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042531.1 MGP_CASTEiJ_G0021664.1 mouse_genomes_project 15 104268905 104292773 - MGP_CASTEiJ_P0042531 Rarg protein_coding protein_coding MGP_CASTEiJ_T0042532.1 MGP_CASTEiJ_G0021664.1 mouse_genomes_project 15 104268907 104281842 - MGP_CASTEiJ_P0042532 Rarg protein_coding protein_coding MGP_CASTEiJ_T0042533.1 MGP_CASTEiJ_G0021664.1 mouse_genomes_project 15 104273961 104292606 - MGP_CASTEiJ_P0042533 Rarg protein_coding protein_coding MGP_CASTEiJ_T0042534.1 MGP_CASTEiJ_G0021664.1 mouse_genomes_project 15 104277318 104278956 - Rarg protein_coding processed_transcript MGP_CASTEiJ_T0042535.1 MGP_CASTEiJ_G0021664.1 mouse_genomes_project 15 104277322 104285627 - Rarg protein_coding processed_transcript MGP_CASTEiJ_T0042536.1 MGP_CASTEiJ_G0021664.1 mouse_genomes_project 15 104277322 104280578 - Rarg protein_coding processed_transcript MGP_CASTEiJ_T0011067.1 MGP_CASTEiJ_G0009255.1 mouse_genomes_project 15 100883733 100883821 - Gm25057 misc_RNA misc_RNA MGP_CASTEiJ_T0042110.1 MGP_CASTEiJ_G0021514.1 mouse_genomes_project 15 94808355 94912982 - MGP_CASTEiJ_P0042110 Prickle1 protein_coding protein_coding MGP_CASTEiJ_T0042111.1 MGP_CASTEiJ_G0021514.1 mouse_genomes_project 15 94808355 94828911 - MGP_CASTEiJ_P0042111 Prickle1 protein_coding protein_coding MGP_CASTEiJ_T0041386.1 MGP_CASTEiJ_G0021312.1 mouse_genomes_project 15 79158582 79166830 + MGP_CASTEiJ_P0041386 Cdc42ep1 protein_coding protein_coding MGP_CASTEiJ_T0009804.1 MGP_CASTEiJ_G0007992.1 mouse_genomes_project 15 83141519 83141579 - Gm27825 miRNA miRNA MGP_CASTEiJ_T0009827.1 MGP_CASTEiJ_G0008015.1 mouse_genomes_project 15 103538589 103538718 + Gm44460 miRNA miRNA MGP_CASTEiJ_T0012695.1 MGP_CASTEiJ_G0010858.1 mouse_genomes_project 15 36316770 36317993 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006607.1 MGP_CASTEiJ_G0005466.1 mouse_genomes_project 15 80078860 80082127 - Gm26884 lincRNA lincRNA MGP_CASTEiJ_T0040697.1 MGP_CASTEiJ_G0021105.1 mouse_genomes_project 15 53444153 53496852 + MGP_CASTEiJ_P0040697 Colec10 protein_coding protein_coding MGP_CASTEiJ_T0040492.1 MGP_CASTEiJ_G0021033.1 mouse_genomes_project 15 32356466 32377840 + Mtdh protein_coding retained_intron MGP_CASTEiJ_T0040493.1 MGP_CASTEiJ_G0021033.1 mouse_genomes_project 15 32356491 32419842 + MGP_CASTEiJ_P0040493 Mtdh protein_coding protein_coding MGP_CASTEiJ_T0040494.1 MGP_CASTEiJ_G0021033.1 mouse_genomes_project 15 32356497 32401848 + Mtdh protein_coding retained_intron MGP_CASTEiJ_T0040495.1 MGP_CASTEiJ_G0021033.1 mouse_genomes_project 15 32356768 32414366 + MGP_CASTEiJ_P0040495 Mtdh protein_coding unknown_likely_coding MGP_CASTEiJ_T0040496.1 MGP_CASTEiJ_G0021033.1 mouse_genomes_project 15 32356808 32411818 + MGP_CASTEiJ_P0040496 Mtdh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040497.1 MGP_CASTEiJ_G0021033.1 mouse_genomes_project 15 32357080 32414230 + MGP_CASTEiJ_P0040497 Mtdh protein_coding protein_coding MGP_CASTEiJ_T0040498.1 MGP_CASTEiJ_G0021033.1 mouse_genomes_project 15 32357091 32414261 + MGP_CASTEiJ_P0040498 Mtdh protein_coding protein_coding MGP_CASTEiJ_T0040499.1 MGP_CASTEiJ_G0021033.1 mouse_genomes_project 15 32357094 32401222 + MGP_CASTEiJ_P0040499 Mtdh protein_coding protein_coding MGP_CASTEiJ_T0040500.1 MGP_CASTEiJ_G0021033.1 mouse_genomes_project 15 32357627 32394315 + Mtdh protein_coding processed_transcript MGP_CASTEiJ_T0040501.1 MGP_CASTEiJ_G0021033.1 mouse_genomes_project 15 32391266 32418158 + MGP_CASTEiJ_P0040501 Mtdh protein_coding protein_coding MGP_CASTEiJ_T0040502.1 MGP_CASTEiJ_G0021033.1 mouse_genomes_project 15 32410974 32418738 + Mtdh protein_coding processed_transcript MGP_CASTEiJ_T0040813.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63610388 63848754 - MGP_CASTEiJ_P0040813 Asap1 protein_coding protein_coding MGP_CASTEiJ_T0040814.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63611916 63848624 - MGP_CASTEiJ_P0040814 Asap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040815.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63612072 63848720 - MGP_CASTEiJ_P0040815 Asap1 protein_coding protein_coding MGP_CASTEiJ_T0040816.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63612075 63923217 - MGP_CASTEiJ_P0040816 Asap1 protein_coding protein_coding MGP_CASTEiJ_T0040817.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63612077 63923217 - MGP_CASTEiJ_P0040817 Asap1 protein_coding protein_coding MGP_CASTEiJ_T0040818.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63612077 63923217 - MGP_CASTEiJ_P0040818 Asap1 protein_coding protein_coding MGP_CASTEiJ_T0040819.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63612077 63923054 - MGP_CASTEiJ_P0040819 Asap1 protein_coding protein_coding MGP_CASTEiJ_T0040820.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63612077 63923217 - MGP_CASTEiJ_P0040820 Asap1 protein_coding protein_coding MGP_CASTEiJ_T0040821.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63612077 63888529 - MGP_CASTEiJ_P0040821 Asap1 protein_coding protein_coding MGP_CASTEiJ_T0040822.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63612155 63923035 - MGP_CASTEiJ_P0040822 Asap1 protein_coding protein_coding MGP_CASTEiJ_T0040823.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63612982 63888529 - MGP_CASTEiJ_P0040823 Asap1 protein_coding protein_coding MGP_CASTEiJ_T0040824.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63612982 63888529 - MGP_CASTEiJ_P0040824 Asap1 protein_coding protein_coding MGP_CASTEiJ_T0040825.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63617571 63625913 - Asap1 protein_coding retained_intron MGP_CASTEiJ_T0040826.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63643307 63646058 - Asap1 protein_coding processed_transcript MGP_CASTEiJ_T0040827.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63643360 63647081 - Asap1 protein_coding retained_intron MGP_CASTEiJ_T0040828.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63684197 63737968 - MGP_CASTEiJ_P0040828 Asap1 protein_coding protein_coding MGP_CASTEiJ_T0040829.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63700767 63923030 - Asap1 protein_coding processed_transcript MGP_CASTEiJ_T0040830.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63720459 63848754 - Asap1 protein_coding retained_intron MGP_CASTEiJ_T0040831.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63720954 63847771 - Asap1 protein_coding processed_transcript MGP_CASTEiJ_T0040832.1 MGP_CASTEiJ_G0021154.1 mouse_genomes_project 15 63737973 63850995 - MGP_CASTEiJ_P0040832 Asap1 protein_coding protein_coding MGP_CASTEiJ_T0041850.1 MGP_CASTEiJ_G0021445.1 mouse_genomes_project 15 85886024 85957067 - MGP_CASTEiJ_P0041850 Smc1b protein_coding protein_coding MGP_CASTEiJ_T0041498.1 MGP_CASTEiJ_G0021341.1 mouse_genomes_project 15 80061432 80077592 - MGP_CASTEiJ_P0041498 Josd1 protein_coding protein_coding MGP_CASTEiJ_T0040306.1 MGP_CASTEiJ_G0020975.1 mouse_genomes_project 15 6599077 6622584 - MGP_CASTEiJ_P0040306 Il7r protein_coding protein_coding MGP_CASTEiJ_T0009784.1 MGP_CASTEiJ_G0007972.1 mouse_genomes_project 15 67949873 67949955 - Mir30d miRNA miRNA MGP_CASTEiJ_T0041314.1 MGP_CASTEiJ_G0021286.1 mouse_genomes_project 15 77669928 77710556 + MGP_CASTEiJ_P0041314 protein_coding protein_coding MGP_CASTEiJ_T0041300.1 MGP_CASTEiJ_G0021279.1 mouse_genomes_project 15 77245782 77489009 - MGP_CASTEiJ_P0041300 Rbfox2 protein_coding protein_coding MGP_CASTEiJ_T0041301.1 MGP_CASTEiJ_G0021279.1 mouse_genomes_project 15 77245783 77328304 - MGP_CASTEiJ_P0041301 Rbfox2 protein_coding protein_coding MGP_CASTEiJ_T0041302.1 MGP_CASTEiJ_G0021279.1 mouse_genomes_project 15 77245783 77489009 - MGP_CASTEiJ_P0041302 Rbfox2 protein_coding protein_coding MGP_CASTEiJ_T0041303.1 MGP_CASTEiJ_G0021279.1 mouse_genomes_project 15 77245783 77328304 - MGP_CASTEiJ_P0041303 Rbfox2 protein_coding protein_coding MGP_CASTEiJ_T0040304.1 MGP_CASTEiJ_G0020973.1 mouse_genomes_project 15 6363572 6451531 + protein_coding retained_intron MGP_CASTEiJ_T0041036.1 MGP_CASTEiJ_G0021215.1 mouse_genomes_project 15 75796826 75806942 + MGP_CASTEiJ_P0041036 Rhpn1 protein_coding protein_coding MGP_CASTEiJ_T0041037.1 MGP_CASTEiJ_G0021215.1 mouse_genomes_project 15 75796854 75806944 + Rhpn1 protein_coding retained_intron MGP_CASTEiJ_T0041038.1 MGP_CASTEiJ_G0021215.1 mouse_genomes_project 15 75796864 75806939 + Rhpn1 protein_coding retained_intron MGP_CASTEiJ_T0041039.1 MGP_CASTEiJ_G0021215.1 mouse_genomes_project 15 75796875 75806942 + MGP_CASTEiJ_P0041039 Rhpn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041040.1 MGP_CASTEiJ_G0021215.1 mouse_genomes_project 15 75796940 75806759 + MGP_CASTEiJ_P0041040 Rhpn1 protein_coding protein_coding MGP_CASTEiJ_T0012683.1 MGP_CASTEiJ_G0010846.1 mouse_genomes_project 15 5965884 5967625 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040555.1 MGP_CASTEiJ_G0021054.1 mouse_genomes_project 15 34979756 34996277 - MGP_CASTEiJ_P0040555 Pabpc1 protein_coding protein_coding MGP_CASTEiJ_T0040556.1 MGP_CASTEiJ_G0021054.1 mouse_genomes_project 15 34979815 34981929 - MGP_CASTEiJ_P0040556 Pabpc1 protein_coding protein_coding MGP_CASTEiJ_T0040557.1 MGP_CASTEiJ_G0021054.1 mouse_genomes_project 15 34979932 34981336 - Pabpc1 protein_coding processed_transcript MGP_CASTEiJ_T0040558.1 MGP_CASTEiJ_G0021054.1 mouse_genomes_project 15 34979932 34982222 - Pabpc1 protein_coding processed_transcript MGP_CASTEiJ_T0040559.1 MGP_CASTEiJ_G0021054.1 mouse_genomes_project 15 34980109 34981646 - Pabpc1 protein_coding processed_transcript MGP_CASTEiJ_T0040560.1 MGP_CASTEiJ_G0021054.1 mouse_genomes_project 15 34990963 34996277 - Pabpc1 protein_coding processed_transcript MGP_CASTEiJ_T0099432.1 MGP_CASTEiJ_G0036345.1 mouse_genomes_project 15 43068540 43068647 + Gm22392 snRNA snRNA MGP_CASTEiJ_T0042390.1 MGP_CASTEiJ_G0021607.1 mouse_genomes_project 15 102136891 102249207 + MGP_CASTEiJ_P0042390 Methig1 protein_coding protein_coding MGP_CASTEiJ_T0042391.1 MGP_CASTEiJ_G0021607.1 mouse_genomes_project 15 102136908 102249080 + MGP_CASTEiJ_P0042391 Methig1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040616.1 MGP_CASTEiJ_G0021073.1 mouse_genomes_project 15 37616086 38131411 + MGP_CASTEiJ_P0040616 Rims2 protein_coding protein_coding MGP_CASTEiJ_T0040617.1 MGP_CASTEiJ_G0021073.1 mouse_genomes_project 15 37616117 38131235 + MGP_CASTEiJ_P0040617 Rims2 protein_coding protein_coding MGP_CASTEiJ_T0040618.1 MGP_CASTEiJ_G0021073.1 mouse_genomes_project 15 37616163 37902467 + MGP_CASTEiJ_P0040618 Rims2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040619.1 MGP_CASTEiJ_G0021073.1 mouse_genomes_project 15 37818556 38061403 + MGP_CASTEiJ_P0040619 Rims2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040620.1 MGP_CASTEiJ_G0021073.1 mouse_genomes_project 15 38109334 38133837 + MGP_CASTEiJ_P0040620 Rims2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040770.1 MGP_CASTEiJ_G0021129.1 mouse_genomes_project 15 57533364 57544036 - MGP_CASTEiJ_P0040770 Klhl38 protein_coding protein_coding MGP_CASTEiJ_T0042637.1 MGP_CASTEiJ_G0021693.1 mouse_genomes_project 15 105305839 105360202 - MGP_CASTEiJ_P0042637 Cbx5 protein_coding protein_coding MGP_CASTEiJ_T0042638.1 MGP_CASTEiJ_G0021693.1 mouse_genomes_project 15 105310980 105332175 - MGP_CASTEiJ_P0042638 Cbx5 protein_coding protein_coding MGP_CASTEiJ_T0042639.1 MGP_CASTEiJ_G0021693.1 mouse_genomes_project 15 105313535 105332128 - MGP_CASTEiJ_P0042639 Cbx5 protein_coding protein_coding MGP_CASTEiJ_T0042640.1 MGP_CASTEiJ_G0021693.1 mouse_genomes_project 15 105329889 105332189 - MGP_CASTEiJ_P0042640 Cbx5 protein_coding protein_coding MGP_CASTEiJ_T0041843.1 MGP_CASTEiJ_G0021440.1 mouse_genomes_project 15 85725003 85734246 - MGP_CASTEiJ_P0041843 Gm29666 protein_coding protein_coding MGP_CASTEiJ_T0009793.1 MGP_CASTEiJ_G0007981.1 mouse_genomes_project 15 78621114 78621176 + Mir7676-2 miRNA miRNA MGP_CASTEiJ_T0040645.1 MGP_CASTEiJ_G0021084.1 mouse_genomes_project 15 42100689 42143746 + MGP_CASTEiJ_P0040645 Emc2 protein_coding protein_coding MGP_CASTEiJ_T0040991.1 MGP_CASTEiJ_G0021201.1 mouse_genomes_project 15 74811327 74820515 - MGP_CASTEiJ_P0040991 protein_coding protein_coding MGP_CASTEiJ_T0003520.1 MGP_CASTEiJ_G0003196.1 mouse_genomes_project 15 101701807 101722050 + Gm21917 antisense antisense MGP_CASTEiJ_T0003521.1 MGP_CASTEiJ_G0003196.1 mouse_genomes_project 15 101701807 101703755 + Gm21917 antisense antisense MGP_CASTEiJ_T0003522.1 MGP_CASTEiJ_G0003196.1 mouse_genomes_project 15 101704872 101722550 + Gm21917 antisense antisense MGP_CASTEiJ_T0040778.1 MGP_CASTEiJ_G0021134.1 mouse_genomes_project 15 58100135 58100868 - MGP_CASTEiJ_P0040778 Ube2d4 protein_coding protein_coding MGP_CASTEiJ_T0003507.1 MGP_CASTEiJ_G0003185.1 mouse_genomes_project 15 87120950 87122369 + Gm15569 antisense antisense MGP_CASTEiJ_T0009778.1 MGP_CASTEiJ_G0007966.1 mouse_genomes_project 15 38627177 38627245 - Gm25958 miRNA miRNA MGP_CASTEiJ_T0040980.1 MGP_CASTEiJ_G0021196.1 mouse_genomes_project 15 74710214 74718133 - MGP_CASTEiJ_P0040980 D730001G18Rik protein_coding protein_coding MGP_CASTEiJ_T0040981.1 MGP_CASTEiJ_G0021196.1 mouse_genomes_project 15 74710215 74718168 - MGP_CASTEiJ_P0040981 D730001G18Rik protein_coding protein_coding MGP_CASTEiJ_T0003524.1 MGP_CASTEiJ_G0003198.1 mouse_genomes_project 15 102461058 102467110 + Gm20680 antisense antisense MGP_CASTEiJ_T0041342.1 MGP_CASTEiJ_G0021294.1 mouse_genomes_project 15 78180249 78315459 - MGP_CASTEiJ_P0041342 Cacng2 protein_coding protein_coding MGP_CASTEiJ_T0040810.1 MGP_CASTEiJ_G0021152.1 mouse_genomes_project 15 63353594 63365784 - MGP_CASTEiJ_P0040810 protein_coding protein_coding MGP_CASTEiJ_T0040811.1 MGP_CASTEiJ_G0021153.1 mouse_genomes_project 15 63445132 63585948 - MGP_CASTEiJ_P0040811 Fam49b protein_coding protein_coding MGP_CASTEiJ_T0040812.1 MGP_CASTEiJ_G0021153.1 mouse_genomes_project 15 63446979 63515749 - MGP_CASTEiJ_P0040812 Fam49b protein_coding protein_coding MGP_CASTEiJ_T0009818.1 MGP_CASTEiJ_G0008006.1 mouse_genomes_project 15 90377100 90377175 - Mir6959 miRNA miRNA MGP_CASTEiJ_T0040698.1 MGP_CASTEiJ_G0021106.1 mouse_genomes_project 15 53604281 53635052 + MGP_CASTEiJ_P0040698 Mal2 protein_coding protein_coding MGP_CASTEiJ_T0041618.1 MGP_CASTEiJ_G0021370.1 mouse_genomes_project 15 81895603 81926333 + Xpnpep3 protein_coding retained_intron MGP_CASTEiJ_T0041619.1 MGP_CASTEiJ_G0021370.1 mouse_genomes_project 15 81895623 81912933 + Xpnpep3 protein_coding retained_intron MGP_CASTEiJ_T0041620.1 MGP_CASTEiJ_G0021370.1 mouse_genomes_project 15 81895649 81957529 + MGP_CASTEiJ_P0041620 Xpnpep3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041621.1 MGP_CASTEiJ_G0021370.1 mouse_genomes_project 15 81895650 81940879 + MGP_CASTEiJ_P0041621 Xpnpep3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041622.1 MGP_CASTEiJ_G0021370.1 mouse_genomes_project 15 81895677 81957529 + MGP_CASTEiJ_P0041622 Xpnpep3 protein_coding protein_coding MGP_CASTEiJ_T0041623.1 MGP_CASTEiJ_G0021370.1 mouse_genomes_project 15 81895686 81925917 + Xpnpep3 protein_coding processed_transcript MGP_CASTEiJ_T0041441.1 MGP_CASTEiJ_G0021327.1 mouse_genomes_project 15 79569543 79595337 + MGP_CASTEiJ_P0041441 Pick1 protein_coding protein_coding MGP_CASTEiJ_T0041442.1 MGP_CASTEiJ_G0021327.1 mouse_genomes_project 15 79569752 79595319 + MGP_CASTEiJ_P0041442 Pick1 protein_coding protein_coding MGP_CASTEiJ_T0041443.1 MGP_CASTEiJ_G0021327.1 mouse_genomes_project 15 79569773 79595324 + MGP_CASTEiJ_P0041443 Pick1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041444.1 MGP_CASTEiJ_G0021327.1 mouse_genomes_project 15 79569781 79593812 + Pick1 protein_coding retained_intron MGP_CASTEiJ_T0041445.1 MGP_CASTEiJ_G0021327.1 mouse_genomes_project 15 79569786 79593812 + Pick1 protein_coding retained_intron MGP_CASTEiJ_T0041446.1 MGP_CASTEiJ_G0021327.1 mouse_genomes_project 15 79569828 79576745 + Pick1 protein_coding processed_transcript MGP_CASTEiJ_T0041447.1 MGP_CASTEiJ_G0021327.1 mouse_genomes_project 15 79569875 79585512 + Pick1 protein_coding retained_intron MGP_CASTEiJ_T0041448.1 MGP_CASTEiJ_G0021327.1 mouse_genomes_project 15 79570072 79595182 + MGP_CASTEiJ_P0041448 Pick1 protein_coding protein_coding MGP_CASTEiJ_T0041449.1 MGP_CASTEiJ_G0021327.1 mouse_genomes_project 15 79588958 79593493 + Pick1 protein_coding processed_transcript MGP_CASTEiJ_T0041450.1 MGP_CASTEiJ_G0021327.1 mouse_genomes_project 15 79590781 79593474 + Pick1 protein_coding processed_transcript MGP_CASTEiJ_T0041451.1 MGP_CASTEiJ_G0021327.1 mouse_genomes_project 15 79591149 79593584 + Pick1 protein_coding processed_transcript MGP_CASTEiJ_T0041452.1 MGP_CASTEiJ_G0021327.1 mouse_genomes_project 15 79592214 79595319 + Pick1 protein_coding processed_transcript MGP_CASTEiJ_T0012692.1 MGP_CASTEiJ_G0010855.1 mouse_genomes_project 15 35758711 35759389 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040949.1 MGP_CASTEiJ_G0021185.1 mouse_genomes_project 15 74432928 74514819 + MGP_CASTEiJ_P0040949 protein_coding protein_coding MGP_CASTEiJ_T0040950.1 MGP_CASTEiJ_G0021185.1 mouse_genomes_project 15 74434829 74514819 + MGP_CASTEiJ_P0040950 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040951.1 MGP_CASTEiJ_G0021185.1 mouse_genomes_project 15 74435222 74514819 + MGP_CASTEiJ_P0040951 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040952.1 MGP_CASTEiJ_G0021185.1 mouse_genomes_project 15 74458775 74464271 + MGP_CASTEiJ_P0040952 protein_coding protein_coding MGP_CASTEiJ_T0040953.1 MGP_CASTEiJ_G0021185.1 mouse_genomes_project 15 74483145 74497860 + MGP_CASTEiJ_P0040953 protein_coding protein_coding MGP_CASTEiJ_T0040954.1 MGP_CASTEiJ_G0021185.1 mouse_genomes_project 15 74485239 74495948 + MGP_CASTEiJ_P0040954 protein_coding protein_coding MGP_CASTEiJ_T0040955.1 MGP_CASTEiJ_G0021185.1 mouse_genomes_project 15 74485506 74514819 + MGP_CASTEiJ_P0040955 protein_coding protein_coding MGP_CASTEiJ_T0040956.1 MGP_CASTEiJ_G0021185.1 mouse_genomes_project 15 74485507 74514798 + MGP_CASTEiJ_P0040956 protein_coding protein_coding MGP_CASTEiJ_T0040957.1 MGP_CASTEiJ_G0021185.1 mouse_genomes_project 15 74485555 74496602 + MGP_CASTEiJ_P0040957 protein_coding protein_coding MGP_CASTEiJ_T0040958.1 MGP_CASTEiJ_G0021185.1 mouse_genomes_project 15 74494707 74514820 + protein_coding processed_transcript MGP_CASTEiJ_T0040959.1 MGP_CASTEiJ_G0021185.1 mouse_genomes_project 15 74497883 74514820 + MGP_CASTEiJ_P0040959 protein_coding protein_coding MGP_CASTEiJ_T0042239.1 MGP_CASTEiJ_G0021555.1 mouse_genomes_project 15 100124501 100132105 + MGP_CASTEiJ_P0042239 Olfr279 protein_coding protein_coding MGP_CASTEiJ_T0042240.1 MGP_CASTEiJ_G0021555.1 mouse_genomes_project 15 100131172 100132105 + MGP_CASTEiJ_P0042240 Olfr279 protein_coding protein_coding MGP_CASTEiJ_T0042507.1 MGP_CASTEiJ_G0021654.1 mouse_genomes_project 15 104006352 104013896 - MGP_CASTEiJ_P0042507 Krt8 protein_coding protein_coding MGP_CASTEiJ_T0102095.1 MGP_CASTEiJ_G0038820.1 mouse_genomes_project 15 100102793 100106742 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0041881.1 MGP_CASTEiJ_G0021457.1 mouse_genomes_project 15 86774541 86946205 - MGP_CASTEiJ_P0041881 Celsr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041887.1 MGP_CASTEiJ_G0021457.1 mouse_genomes_project 15 86792045 86947074 - MGP_CASTEiJ_P0041887 Celsr1 protein_coding protein_coding MGP_CASTEiJ_T0041888.1 MGP_CASTEiJ_G0021457.1 mouse_genomes_project 15 86793989 86947067 - MGP_CASTEiJ_P0041888 Celsr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009792.1 MGP_CASTEiJ_G0007980.1 mouse_genomes_project 15 78535933 78535995 - Mir7676-1 miRNA miRNA MGP_CASTEiJ_T0099423.1 MGP_CASTEiJ_G0036336.1 mouse_genomes_project 15 15736516 15736623 - Gm24713 snRNA snRNA MGP_CASTEiJ_T0041673.1 MGP_CASTEiJ_G0021383.1 mouse_genomes_project 15 82501800 82517635 + MGP_CASTEiJ_P0041673 Csdc2 protein_coding protein_coding MGP_CASTEiJ_T0041674.1 MGP_CASTEiJ_G0021383.1 mouse_genomes_project 15 82502039 82513547 + MGP_CASTEiJ_P0041674 Csdc2 protein_coding protein_coding MGP_CASTEiJ_T0041675.1 MGP_CASTEiJ_G0021383.1 mouse_genomes_project 15 82512384 82513565 + Csdc2 protein_coding processed_transcript MGP_CASTEiJ_T0041676.1 MGP_CASTEiJ_G0021383.1 mouse_genomes_project 15 82513638 82517628 + Csdc2 protein_coding retained_intron MGP_CASTEiJ_T0009771.1 MGP_CASTEiJ_G0007959.1 mouse_genomes_project 15 34018471 34018549 - Mir875 miRNA miRNA MGP_CASTEiJ_T0012701.1 MGP_CASTEiJ_G0010864.1 mouse_genomes_project 15 46444426 46447963 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040622.1 MGP_CASTEiJ_G0021075.1 mouse_genomes_project 15 38205426 38298868 - MGP_CASTEiJ_P0040622 Dpys protein_coding protein_coding MGP_CASTEiJ_T0040623.1 MGP_CASTEiJ_G0021075.1 mouse_genomes_project 15 38221569 38298871 - MGP_CASTEiJ_P0040623 Dpys protein_coding protein_coding MGP_CASTEiJ_T0040624.1 MGP_CASTEiJ_G0021075.1 mouse_genomes_project 15 38221576 38232276 - MGP_CASTEiJ_P0040624 Dpys protein_coding protein_coding MGP_CASTEiJ_T0040625.1 MGP_CASTEiJ_G0021075.1 mouse_genomes_project 15 38237605 38298813 - MGP_CASTEiJ_P0040625 Dpys protein_coding unknown_likely_coding MGP_CASTEiJ_T0040626.1 MGP_CASTEiJ_G0021075.1 mouse_genomes_project 15 38297983 38298871 - Dpys protein_coding processed_transcript MGP_CASTEiJ_T0006619.1 MGP_CASTEiJ_G0005474.1 mouse_genomes_project 15 90279944 90284554 - Gm26798 lincRNA lincRNA MGP_CASTEiJ_T0012700.1 MGP_CASTEiJ_G0010863.1 mouse_genomes_project 15 43598484 43598826 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012687.1 MGP_CASTEiJ_G0010850.1 mouse_genomes_project 15 20801565 20803318 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040960.1 MGP_CASTEiJ_G0021186.1 mouse_genomes_project 15 74531249 74563134 - MGP_CASTEiJ_P0040960 Mroh4 protein_coding protein_coding MGP_CASTEiJ_T0040961.1 MGP_CASTEiJ_G0021186.1 mouse_genomes_project 15 74531249 74561634 - MGP_CASTEiJ_P0040961 Mroh4 protein_coding protein_coding MGP_CASTEiJ_T0040962.1 MGP_CASTEiJ_G0021186.1 mouse_genomes_project 15 74531623 74537232 - MGP_CASTEiJ_P0040962 Mroh4 protein_coding protein_coding MGP_CASTEiJ_T0040963.1 MGP_CASTEiJ_G0021186.1 mouse_genomes_project 15 74531635 74533449 - Mroh4 protein_coding retained_intron MGP_CASTEiJ_T0040964.1 MGP_CASTEiJ_G0021186.1 mouse_genomes_project 15 74541357 74555148 - MGP_CASTEiJ_P0040964 Mroh4 protein_coding protein_coding MGP_CASTEiJ_T0040965.1 MGP_CASTEiJ_G0021186.1 mouse_genomes_project 15 74558383 74563079 - Mroh4 protein_coding processed_transcript MGP_CASTEiJ_T0040739.1 MGP_CASTEiJ_G0021119.1 mouse_genomes_project 15 56847044 57013211 + MGP_CASTEiJ_P0040739 Zhx2 protein_coding protein_coding MGP_CASTEiJ_T0040740.1 MGP_CASTEiJ_G0021119.1 mouse_genomes_project 15 56850138 56991721 + Zhx2 protein_coding processed_transcript MGP_CASTEiJ_T0041126.1 MGP_CASTEiJ_G0021237.1 mouse_genomes_project 15 76375010 76378116 + MGP_CASTEiJ_P0041126 Grina protein_coding protein_coding MGP_CASTEiJ_T0016718.1 MGP_CASTEiJ_G0014612.1 mouse_genomes_project 15 67943393 67946107 - Gm26621 processed_transcript TEC MGP_CASTEiJ_T0016719.1 MGP_CASTEiJ_G0014612.1 mouse_genomes_project 15 67943799 67946087 - Gm26621 processed_transcript processed_transcript MGP_CASTEiJ_T0042300.1 MGP_CASTEiJ_G0021581.1 mouse_genomes_project 15 100933038 100952188 + MGP_CASTEiJ_P0042300 Kcnh3 protein_coding protein_coding MGP_CASTEiJ_T0040253.1 MGP_CASTEiJ_G0020960.1 mouse_genomes_project 15 4081617 4145957 + MGP_CASTEiJ_P0040253 Lifr protein_coding protein_coding MGP_CASTEiJ_T0040254.1 MGP_CASTEiJ_G0020960.1 mouse_genomes_project 15 4081630 4139546 + MGP_CASTEiJ_P0040254 Lifr protein_coding protein_coding MGP_CASTEiJ_T0040255.1 MGP_CASTEiJ_G0020960.1 mouse_genomes_project 15 4108578 4151564 + MGP_CASTEiJ_P0040255 Lifr protein_coding protein_coding MGP_CASTEiJ_T0042157.1 MGP_CASTEiJ_G0021535.1 mouse_genomes_project 15 99314999 99337673 - MGP_CASTEiJ_P0042157 Rapgef3 protein_coding protein_coding MGP_CASTEiJ_T0042158.1 MGP_CASTEiJ_G0021535.1 mouse_genomes_project 15 99315002 99337539 - MGP_CASTEiJ_P0042158 Rapgef3 protein_coding protein_coding MGP_CASTEiJ_T0042159.1 MGP_CASTEiJ_G0021535.1 mouse_genomes_project 15 99315204 99337541 - MGP_CASTEiJ_P0042159 Rapgef3 protein_coding protein_coding MGP_CASTEiJ_T0042160.1 MGP_CASTEiJ_G0021535.1 mouse_genomes_project 15 99315321 99337261 - MGP_CASTEiJ_P0042160 Rapgef3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042161.1 MGP_CASTEiJ_G0021535.1 mouse_genomes_project 15 99315404 99318925 - Rapgef3 protein_coding retained_intron MGP_CASTEiJ_T0042162.1 MGP_CASTEiJ_G0021535.1 mouse_genomes_project 15 99315584 99337241 - MGP_CASTEiJ_P0042162 Rapgef3 protein_coding protein_coding MGP_CASTEiJ_T0042163.1 MGP_CASTEiJ_G0021535.1 mouse_genomes_project 15 99316553 99337462 - Rapgef3 protein_coding retained_intron MGP_CASTEiJ_T0042164.1 MGP_CASTEiJ_G0021535.1 mouse_genomes_project 15 99319767 99320776 - Rapgef3 protein_coding retained_intron MGP_CASTEiJ_T0042165.1 MGP_CASTEiJ_G0021535.1 mouse_genomes_project 15 99320427 99327548 - Rapgef3 protein_coding retained_intron MGP_CASTEiJ_T0042167.1 MGP_CASTEiJ_G0021535.1 mouse_genomes_project 15 99328936 99330470 - Rapgef3 protein_coding processed_transcript MGP_CASTEiJ_T0042168.1 MGP_CASTEiJ_G0021535.1 mouse_genomes_project 15 99329397 99336886 - MGP_CASTEiJ_P0042168 Rapgef3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042169.1 MGP_CASTEiJ_G0021535.1 mouse_genomes_project 15 99329402 99331928 - Rapgef3 protein_coding processed_transcript MGP_CASTEiJ_T0042170.1 MGP_CASTEiJ_G0021535.1 mouse_genomes_project 15 99330719 99337104 - MGP_CASTEiJ_P0042170 Rapgef3 protein_coding protein_coding MGP_CASTEiJ_T0042171.1 MGP_CASTEiJ_G0021535.1 mouse_genomes_project 15 99330742 99331903 - Rapgef3 protein_coding retained_intron MGP_CASTEiJ_T0042172.1 MGP_CASTEiJ_G0021535.1 mouse_genomes_project 15 99336698 99337847 - MGP_CASTEiJ_P0042172 Rapgef3 protein_coding protein_coding MGP_CASTEiJ_T0041573.1 MGP_CASTEiJ_G0021361.1 mouse_genomes_project 15 81120458 81150561 + MGP_CASTEiJ_P0041573 Fam83f protein_coding protein_coding MGP_CASTEiJ_T0102086.1 MGP_CASTEiJ_G0038811.1 mouse_genomes_project 15 75221251 75224393 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0003504.1 MGP_CASTEiJ_G0003182.1 mouse_genomes_project 15 83535188 83541908 + Gm20324 antisense antisense MGP_CASTEiJ_T0040488.1 MGP_CASTEiJ_G0021030.1 mouse_genomes_project 15 31129462 31350964 + MGP_CASTEiJ_P0040488 Sdc2 protein_coding protein_coding MGP_CASTEiJ_T0040489.1 MGP_CASTEiJ_G0021030.1 mouse_genomes_project 15 31129509 31130036 + Sdc2 protein_coding processed_transcript MGP_CASTEiJ_T0041961.1 MGP_CASTEiJ_G0021477.1 mouse_genomes_project 15 90204541 90211664 - MGP_CASTEiJ_P0041961 Mapk11 protein_coding protein_coding MGP_CASTEiJ_T0041664.1 MGP_CASTEiJ_G0021379.1 mouse_genomes_project 15 82402489 82412748 - MGP_CASTEiJ_P0041664 Tob2 protein_coding protein_coding MGP_CASTEiJ_T0012726.1 MGP_CASTEiJ_G0010889.1 mouse_genomes_project 15 84951780 84952074 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0041379.1 MGP_CASTEiJ_G0021310.1 mouse_genomes_project 15 79062855 79082400 - MGP_CASTEiJ_P0041379 Mfng protein_coding protein_coding MGP_CASTEiJ_T0041380.1 MGP_CASTEiJ_G0021310.1 mouse_genomes_project 15 79067449 79076125 - Mfng protein_coding retained_intron MGP_CASTEiJ_T0041381.1 MGP_CASTEiJ_G0021310.1 mouse_genomes_project 15 79072828 79076099 - Mfng protein_coding retained_intron MGP_CASTEiJ_T0041382.1 MGP_CASTEiJ_G0021310.1 mouse_genomes_project 15 79075819 79080758 - Mfng protein_coding processed_transcript MGP_CASTEiJ_T0040705.1 MGP_CASTEiJ_G0021109.1 mouse_genomes_project 15 54082782 54144316 - MGP_CASTEiJ_P0040705 Taf2 protein_coding protein_coding MGP_CASTEiJ_T0042512.1 MGP_CASTEiJ_G0021658.1 mouse_genomes_project 15 104134987 104155021 - Spryd3 protein_coding retained_intron MGP_CASTEiJ_T0042513.1 MGP_CASTEiJ_G0021658.1 mouse_genomes_project 15 104134987 104155063 - MGP_CASTEiJ_P0042513 Spryd3 protein_coding protein_coding MGP_CASTEiJ_T0042514.1 MGP_CASTEiJ_G0021658.1 mouse_genomes_project 15 104136641 104147506 - Spryd3 protein_coding processed_transcript MGP_CASTEiJ_T0042515.1 MGP_CASTEiJ_G0021658.1 mouse_genomes_project 15 104149035 104149726 - Spryd3 protein_coding retained_intron MGP_CASTEiJ_T0042007.1 MGP_CASTEiJ_G0021487.1 mouse_genomes_project 15 90450070 90456511 - MGP_CASTEiJ_P0042007 Tymp protein_coding protein_coding MGP_CASTEiJ_T0100672.1 MGP_CASTEiJ_G0037585.1 mouse_genomes_project 15 33826886 33827033 + Gm24771 snoRNA snoRNA MGP_CASTEiJ_T0041424.1 MGP_CASTEiJ_G0021323.1 mouse_genomes_project 15 79443083 79474418 + MGP_CASTEiJ_P0041424 Micall1 protein_coding protein_coding MGP_CASTEiJ_T0040533.1 MGP_CASTEiJ_G0021044.1 mouse_genomes_project 15 33631983 33639224 + MGP_CASTEiJ_P0040533 Osr2 protein_coding protein_coding MGP_CASTEiJ_T0040774.1 MGP_CASTEiJ_G0021132.1 mouse_genomes_project 15 57753131 57912555 + MGP_CASTEiJ_P0040774 Fer1l6 protein_coding protein_coding MGP_CASTEiJ_T0040775.1 MGP_CASTEiJ_G0021132.1 mouse_genomes_project 15 57881054 57889574 + Fer1l6 protein_coding processed_transcript MGP_CASTEiJ_T0040776.1 MGP_CASTEiJ_G0021132.1 mouse_genomes_project 15 57898101 57914716 + Fer1l6 protein_coding retained_intron MGP_CASTEiJ_T0012685.1 MGP_CASTEiJ_G0010848.1 mouse_genomes_project 15 7678634 7682586 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012708.1 MGP_CASTEiJ_G0010871.1 mouse_genomes_project 15 59329032 59329482 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040256.1 MGP_CASTEiJ_G0020961.1 mouse_genomes_project 15 4160182 4346644 - MGP_CASTEiJ_P0040256 Egflam protein_coding protein_coding MGP_CASTEiJ_T0040257.1 MGP_CASTEiJ_G0020961.1 mouse_genomes_project 15 4160640 4346691 - MGP_CASTEiJ_P0040257 Egflam protein_coding protein_coding MGP_CASTEiJ_T0040258.1 MGP_CASTEiJ_G0020961.1 mouse_genomes_project 15 4160645 4346735 - MGP_CASTEiJ_P0040258 Egflam protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040259.1 MGP_CASTEiJ_G0020961.1 mouse_genomes_project 15 4167427 4178037 - Egflam protein_coding retained_intron MGP_CASTEiJ_T0040260.1 MGP_CASTEiJ_G0020961.1 mouse_genomes_project 15 4188909 4346609 - Egflam protein_coding retained_intron MGP_CASTEiJ_T0040261.1 MGP_CASTEiJ_G0020961.1 mouse_genomes_project 15 4209869 4211127 - Egflam protein_coding processed_transcript MGP_CASTEiJ_T0040262.1 MGP_CASTEiJ_G0020961.1 mouse_genomes_project 15 4257711 4346601 - Egflam protein_coding retained_intron MGP_CASTEiJ_T0040652.1 MGP_CASTEiJ_G0021088.1 mouse_genomes_project 15 43064054 43074311 + MGP_CASTEiJ_P0040652 Eny2 protein_coding protein_coding MGP_CASTEiJ_T0009816.1 MGP_CASTEiJ_G0008004.1 mouse_genomes_project 15 90227739 90227800 - Mir7118 miRNA miRNA MGP_CASTEiJ_T0012717.1 MGP_CASTEiJ_G0010880.1 mouse_genomes_project 15 76272109 76272349 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040914.1 MGP_CASTEiJ_G0021176.1 mouse_genomes_project 15 72888972 72892572 + MGP_CASTEiJ_P0040914 Chrac1 protein_coding protein_coding MGP_CASTEiJ_T0040915.1 MGP_CASTEiJ_G0021176.1 mouse_genomes_project 15 72888972 72896038 + MGP_CASTEiJ_P0040915 Chrac1 protein_coding protein_coding MGP_CASTEiJ_T0040916.1 MGP_CASTEiJ_G0021176.1 mouse_genomes_project 15 72888984 72905071 + MGP_CASTEiJ_P0040916 Chrac1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040917.1 MGP_CASTEiJ_G0021176.1 mouse_genomes_project 15 72888992 72893271 + Chrac1 protein_coding retained_intron MGP_CASTEiJ_T0041388.1 MGP_CASTEiJ_G0021314.1 mouse_genomes_project 15 79194989 79216148 + MGP_CASTEiJ_P0041388 Gga1 protein_coding protein_coding MGP_CASTEiJ_T0041572.1 MGP_CASTEiJ_G0021360.1 mouse_genomes_project 15 81072138 81100087 + MGP_CASTEiJ_P0041572 Grap2 protein_coding protein_coding MGP_CASTEiJ_T0011068.1 MGP_CASTEiJ_G0009256.1 mouse_genomes_project 15 104549686 104549868 + Gm27406 misc_RNA misc_RNA MGP_CASTEiJ_T0042099.1 MGP_CASTEiJ_G0021512.1 mouse_genomes_project 15 94692789 94703601 - MGP_CASTEiJ_P0042099 Zcrb1 protein_coding protein_coding MGP_CASTEiJ_T0042100.1 MGP_CASTEiJ_G0021512.1 mouse_genomes_project 15 94692798 94703634 - MGP_CASTEiJ_P0042100 Zcrb1 protein_coding protein_coding MGP_CASTEiJ_T0042101.1 MGP_CASTEiJ_G0021512.1 mouse_genomes_project 15 94692802 94698892 - Zcrb1 protein_coding retained_intron MGP_CASTEiJ_T0042102.1 MGP_CASTEiJ_G0021512.1 mouse_genomes_project 15 94692805 94699089 - Zcrb1 protein_coding retained_intron MGP_CASTEiJ_T0042103.1 MGP_CASTEiJ_G0021512.1 mouse_genomes_project 15 94694484 94695006 - Zcrb1 protein_coding retained_intron MGP_CASTEiJ_T0042104.1 MGP_CASTEiJ_G0021512.1 mouse_genomes_project 15 94694616 94699381 - Zcrb1 protein_coding retained_intron MGP_CASTEiJ_T0042105.1 MGP_CASTEiJ_G0021512.1 mouse_genomes_project 15 94694668 94703634 - MGP_CASTEiJ_P0042105 Zcrb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041817.1 MGP_CASTEiJ_G0021433.1 mouse_genomes_project 15 85005521 85103774 + MGP_CASTEiJ_P0041817 Parvb protein_coding protein_coding MGP_CASTEiJ_T0041818.1 MGP_CASTEiJ_G0021433.1 mouse_genomes_project 15 85005544 85049560 + MGP_CASTEiJ_P0041818 Parvb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041819.1 MGP_CASTEiJ_G0021433.1 mouse_genomes_project 15 85032128 85071728 + Parvb protein_coding processed_transcript MGP_CASTEiJ_T0041984.1 MGP_CASTEiJ_G0021482.1 mouse_genomes_project 15 90394838 90396575 + MGP_CASTEiJ_P0041984 Adm2 protein_coding protein_coding MGP_CASTEiJ_T0099453.1 MGP_CASTEiJ_G0036366.1 mouse_genomes_project 15 77422005 77422151 - Gm24056 snRNA snRNA MGP_CASTEiJ_T0041684.1 MGP_CASTEiJ_G0021385.1 mouse_genomes_project 15 82551455 82552490 + MGP_CASTEiJ_P0041684 1700029P11Rik protein_coding protein_coding MGP_CASTEiJ_T0040486.1 MGP_CASTEiJ_G0021028.1 mouse_genomes_project 15 30510154 30511160 + MGP_CASTEiJ_P0040486 Tas2r119 protein_coding protein_coding MGP_CASTEiJ_T0041765.1 MGP_CASTEiJ_G0021416.1 mouse_genomes_project 15 83793231 83964916 - MGP_CASTEiJ_P0041765 Poldip3 protein_coding protein_coding MGP_CASTEiJ_T0041766.1 MGP_CASTEiJ_G0021416.1 mouse_genomes_project 15 83793231 83964969 - MGP_CASTEiJ_P0041766 Poldip3 protein_coding protein_coding MGP_CASTEiJ_T0041767.1 MGP_CASTEiJ_G0021416.1 mouse_genomes_project 15 83800424 83964886 - MGP_CASTEiJ_P0041767 Poldip3 protein_coding protein_coding MGP_CASTEiJ_T0041768.1 MGP_CASTEiJ_G0021416.1 mouse_genomes_project 15 83800519 83803185 - Poldip3 protein_coding retained_intron MGP_CASTEiJ_T0041769.1 MGP_CASTEiJ_G0021416.1 mouse_genomes_project 15 83802961 83964914 - Poldip3 protein_coding retained_intron MGP_CASTEiJ_T0041770.1 MGP_CASTEiJ_G0021416.1 mouse_genomes_project 15 83805101 83964921 - Poldip3 protein_coding retained_intron MGP_CASTEiJ_T0040653.1 MGP_CASTEiJ_G0021089.1 mouse_genomes_project 15 43092567 43240849 + MGP_CASTEiJ_P0040653 Pkhd1l1 protein_coding protein_coding MGP_CASTEiJ_T0040654.1 MGP_CASTEiJ_G0021089.1 mouse_genomes_project 15 43092567 43245878 + MGP_CASTEiJ_P0040654 Pkhd1l1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040655.1 MGP_CASTEiJ_G0021089.1 mouse_genomes_project 15 43092567 43240855 + MGP_CASTEiJ_P0040655 Pkhd1l1 protein_coding protein_coding MGP_CASTEiJ_T0009798.1 MGP_CASTEiJ_G0007986.1 mouse_genomes_project 15 80488366 80488474 - Snord43 miRNA miRNA MGP_CASTEiJ_T0009812.1 MGP_CASTEiJ_G0008000.1 mouse_genomes_project 15 86581616 86581711 + Mirlet7c-2 miRNA miRNA MGP_CASTEiJ_T0041216.1 MGP_CASTEiJ_G0021257.1 mouse_genomes_project 15 76713242 76736755 + MGP_CASTEiJ_P0041216 Adck5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041217.1 MGP_CASTEiJ_G0021257.1 mouse_genomes_project 15 76713262 76736763 + Adck5 protein_coding retained_intron MGP_CASTEiJ_T0041218.1 MGP_CASTEiJ_G0021257.1 mouse_genomes_project 15 76713288 76732772 + Adck5 protein_coding processed_transcript MGP_CASTEiJ_T0041219.1 MGP_CASTEiJ_G0021257.1 mouse_genomes_project 15 76713295 76736756 + Adck5 protein_coding retained_intron MGP_CASTEiJ_T0041220.1 MGP_CASTEiJ_G0021257.1 mouse_genomes_project 15 76713296 76730666 + Adck5 protein_coding processed_transcript MGP_CASTEiJ_T0041221.1 MGP_CASTEiJ_G0021257.1 mouse_genomes_project 15 76713357 76736597 + MGP_CASTEiJ_P0041221 Adck5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041222.1 MGP_CASTEiJ_G0021257.1 mouse_genomes_project 15 76713366 76736749 + MGP_CASTEiJ_P0041222 Adck5 protein_coding protein_coding MGP_CASTEiJ_T0041223.1 MGP_CASTEiJ_G0021257.1 mouse_genomes_project 15 76734384 76735117 + Adck5 protein_coding retained_intron MGP_CASTEiJ_T0041224.1 MGP_CASTEiJ_G0021257.1 mouse_genomes_project 15 76734847 76736103 + Adck5 protein_coding retained_intron MGP_CASTEiJ_T0041225.1 MGP_CASTEiJ_G0021257.1 mouse_genomes_project 15 76735114 76736135 + Adck5 protein_coding retained_intron MGP_CASTEiJ_T0041226.1 MGP_CASTEiJ_G0021257.1 mouse_genomes_project 15 76735239 76736763 + Adck5 protein_coding retained_intron MGP_CASTEiJ_T0041227.1 MGP_CASTEiJ_G0021257.1 mouse_genomes_project 15 76735768 76736110 + Adck5 protein_coding retained_intron MGP_CASTEiJ_T0041228.1 MGP_CASTEiJ_G0021257.1 mouse_genomes_project 15 76735910 76736663 + Adck5 protein_coding retained_intron MGP_CASTEiJ_T0016699.1 MGP_CASTEiJ_G0014604.1 mouse_genomes_project 15 16462945 16592521 - C030047K22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0040773.1 MGP_CASTEiJ_G0021131.1 mouse_genomes_project 15 57651595 57693996 + MGP_CASTEiJ_P0040773 Fam91a1 protein_coding protein_coding MGP_CASTEiJ_T0000893.1 MGP_CASTEiJ_G0000832.1 mouse_genomes_project 15 3936032 3942490 + TEC TEC MGP_CASTEiJ_T0041490.1 MGP_CASTEiJ_G0021338.1 mouse_genomes_project 15 79991959 80044330 - MGP_CASTEiJ_P0041490 Fam227a protein_coding protein_coding MGP_CASTEiJ_T0041491.1 MGP_CASTEiJ_G0021338.1 mouse_genomes_project 15 79994536 80044165 - MGP_CASTEiJ_P0041491 Fam227a protein_coding protein_coding MGP_CASTEiJ_T0041492.1 MGP_CASTEiJ_G0021338.1 mouse_genomes_project 15 79994590 80044165 - MGP_CASTEiJ_P0041492 Fam227a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041493.1 MGP_CASTEiJ_G0021338.1 mouse_genomes_project 15 79994590 80044121 - MGP_CASTEiJ_P0041493 Fam227a protein_coding protein_coding MGP_CASTEiJ_T0041494.1 MGP_CASTEiJ_G0021338.1 mouse_genomes_project 15 80019174 80044330 - Fam227a protein_coding retained_intron MGP_CASTEiJ_T0041181.1 MGP_CASTEiJ_G0021248.1 mouse_genomes_project 15 76503598 76506577 - MGP_CASTEiJ_P0041181 Tssk5 protein_coding protein_coding MGP_CASTEiJ_T0100687.1 MGP_CASTEiJ_G0037600.1 mouse_genomes_project 15 69070897 69071029 - Gm24232 snoRNA snoRNA MGP_CASTEiJ_T0003477.1 MGP_CASTEiJ_G0003162.1 mouse_genomes_project 15 3230049 3236943 - Gm16311 antisense antisense MGP_CASTEiJ_T0098522.1 MGP_CASTEiJ_G0035453.1 mouse_genomes_project 15 92760024 92760137 - Gm24647 rRNA rRNA MGP_CASTEiJ_T0006617.1 MGP_CASTEiJ_G0005472.1 mouse_genomes_project 15 86445815 86458410 + AU022754 lincRNA lincRNA MGP_CASTEiJ_T0041740.1 MGP_CASTEiJ_G0021410.1 mouse_genomes_project 15 83385235 83389274 - MGP_CASTEiJ_P0041740 Cyp2d40 protein_coding protein_coding MGP_CASTEiJ_T0041308.1 MGP_CASTEiJ_G0021283.1 mouse_genomes_project 15 77606123 77616606 - MGP_CASTEiJ_P0041308 protein_coding protein_coding MGP_CASTEiJ_T0040546.1 MGP_CASTEiJ_G0021049.1 mouse_genomes_project 15 34546946 34549900 + MGP_CASTEiJ_P0040546 Polr2k protein_coding protein_coding MGP_CASTEiJ_T0040547.1 MGP_CASTEiJ_G0021049.1 mouse_genomes_project 15 34546969 34549903 + MGP_CASTEiJ_P0040547 Polr2k protein_coding protein_coding MGP_CASTEiJ_T0099421.1 MGP_CASTEiJ_G0036334.1 mouse_genomes_project 15 5209466 5209577 + Gm24144 snRNA snRNA MGP_CASTEiJ_T0041816.1 MGP_CASTEiJ_G0021432.1 mouse_genomes_project 15 84961512 84985977 + MGP_CASTEiJ_P0041816 Samm50 protein_coding protein_coding MGP_CASTEiJ_T0041815.1 MGP_CASTEiJ_G0021431.1 mouse_genomes_project 15 84933338 84958746 + MGP_CASTEiJ_P0041815 Pnpla3 protein_coding protein_coding MGP_CASTEiJ_T0041624.1 MGP_CASTEiJ_G0021371.1 mouse_genomes_project 15 81903732 81905106 - MGP_CASTEiJ_P0041624 Dnajb7 protein_coding protein_coding MGP_CASTEiJ_T0012720.1 MGP_CASTEiJ_G0010883.1 mouse_genomes_project 15 78842697 78843138 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0041913.1 MGP_CASTEiJ_G0021467.1 mouse_genomes_project 15 89917448 89920981 + MGP_CASTEiJ_P0041913 Pim3 protein_coding protein_coding MGP_CASTEiJ_T0042600.1 MGP_CASTEiJ_G0021678.1 mouse_genomes_project 15 104591449 104592325 - MGP_CASTEiJ_P0042600 Npff protein_coding protein_coding MGP_CASTEiJ_T0042602.1 MGP_CASTEiJ_G0021678.1 mouse_genomes_project 15 104591456 104592551 - Npff protein_coding retained_intron MGP_CASTEiJ_T0011065.1 MGP_CASTEiJ_G0009253.1 mouse_genomes_project 15 92824443 92824729 - Gm25389 misc_RNA misc_RNA MGP_CASTEiJ_T0101541.1 MGP_CASTEiJ_G0038426.1 mouse_genomes_project 15 79601410 79601923 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0040771.1 MGP_CASTEiJ_G0021130.1 mouse_genomes_project 15 57561744 57625516 - MGP_CASTEiJ_P0040771 Anxa13 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040772.1 MGP_CASTEiJ_G0021130.1 mouse_genomes_project 15 57561744 57597804 - MGP_CASTEiJ_P0040772 Anxa13 protein_coding protein_coding MGP_CASTEiJ_T0016735.1 MGP_CASTEiJ_G0014622.1 mouse_genomes_project 15 93092662 93117686 + processed_transcript processed_transcript MGP_CASTEiJ_T0016736.1 MGP_CASTEiJ_G0014622.1 mouse_genomes_project 15 93099614 93130769 + processed_transcript processed_transcript MGP_CASTEiJ_T0042041.1 MGP_CASTEiJ_G0021497.1 mouse_genomes_project 15 90672191 90678299 + MGP_CASTEiJ_P0042041 Acr protein_coding protein_coding MGP_CASTEiJ_T0041703.1 MGP_CASTEiJ_G0021389.1 mouse_genomes_project 15 82639863 82647333 + MGP_CASTEiJ_P0041703 4930407I10Rik protein_coding protein_coding MGP_CASTEiJ_T0040835.1 MGP_CASTEiJ_G0021156.1 mouse_genomes_project 15 64372532 64498131 + MGP_CASTEiJ_P0040835 Gm21798 protein_coding protein_coding MGP_CASTEiJ_T0041711.1 MGP_CASTEiJ_G0021393.1 mouse_genomes_project 15 82798394 82805112 - MGP_CASTEiJ_P0041711 Shisa8 protein_coding protein_coding MGP_CASTEiJ_T0041019.1 MGP_CASTEiJ_G0021211.1 mouse_genomes_project 15 75623231 75644552 - MGP_CASTEiJ_P0041019 Ly6h protein_coding protein_coding MGP_CASTEiJ_T0041020.1 MGP_CASTEiJ_G0021211.1 mouse_genomes_project 15 75630941 75644552 - MGP_CASTEiJ_P0041020 Ly6h protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041021.1 MGP_CASTEiJ_G0021211.1 mouse_genomes_project 15 75642645 75645159 - MGP_CASTEiJ_P0041021 Ly6h protein_coding protein_coding MGP_CASTEiJ_T0041022.1 MGP_CASTEiJ_G0021211.1 mouse_genomes_project 15 75642646 75644760 - MGP_CASTEiJ_P0041022 Ly6h protein_coding protein_coding MGP_CASTEiJ_T0041023.1 MGP_CASTEiJ_G0021211.1 mouse_genomes_project 15 75642648 75644561 - MGP_CASTEiJ_P0041023 Ly6h protein_coding protein_coding MGP_CASTEiJ_T0041024.1 MGP_CASTEiJ_G0021211.1 mouse_genomes_project 15 75642927 75645120 - MGP_CASTEiJ_P0041024 Ly6h protein_coding protein_coding MGP_CASTEiJ_T0041025.1 MGP_CASTEiJ_G0021211.1 mouse_genomes_project 15 75643114 75644536 - Ly6h protein_coding retained_intron MGP_CASTEiJ_T0011049.1 MGP_CASTEiJ_G0009237.1 mouse_genomes_project 15 727698 727968 + Gm23228 misc_RNA misc_RNA MGP_CASTEiJ_T0041346.1 MGP_CASTEiJ_G0021297.1 mouse_genomes_project 15 78448278 78465478 + MGP_CASTEiJ_P0041346 Ncf4 protein_coding protein_coding MGP_CASTEiJ_T0041347.1 MGP_CASTEiJ_G0021297.1 mouse_genomes_project 15 78448321 78463883 + MGP_CASTEiJ_P0041347 Ncf4 protein_coding protein_coding MGP_CASTEiJ_T0041348.1 MGP_CASTEiJ_G0021297.1 mouse_genomes_project 15 78456536 78459531 + Ncf4 protein_coding retained_intron MGP_CASTEiJ_T0041349.1 MGP_CASTEiJ_G0021297.1 mouse_genomes_project 15 78456750 78463658 + Ncf4 protein_coding processed_transcript MGP_CASTEiJ_T0041350.1 MGP_CASTEiJ_G0021297.1 mouse_genomes_project 15 78458952 78463691 + Ncf4 protein_coding retained_intron MGP_CASTEiJ_T0041351.1 MGP_CASTEiJ_G0021297.1 mouse_genomes_project 15 78463766 78465473 + Ncf4 protein_coding retained_intron MGP_CASTEiJ_T0009808.1 MGP_CASTEiJ_G0007996.1 mouse_genomes_project 15 83605786 83605865 - Mir3080 miRNA miRNA MGP_CASTEiJ_T0098342.1 MGP_CASTEiJ_G0035273.1 mouse_genomes_project 15 43507572 43509248 + pseudogene pseudogene MGP_CASTEiJ_T0040656.1 MGP_CASTEiJ_G0021090.1 mouse_genomes_project 15 43264855 43291449 + MGP_CASTEiJ_P0040656 Ebag9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042132.1 MGP_CASTEiJ_G0021522.1 mouse_genomes_project 15 97226195 97229642 - MGP_CASTEiJ_P0042132 A130051J06Rik protein_coding protein_coding MGP_CASTEiJ_T0040425.1 MGP_CASTEiJ_G0021006.1 mouse_genomes_project 15 23118223 23129706 - MGP_CASTEiJ_P0040425 9230109A22Rik protein_coding protein_coding MGP_CASTEiJ_T0041065.1 MGP_CASTEiJ_G0021223.1 mouse_genomes_project 15 76021310 76026388 - MGP_CASTEiJ_P0041065 Pycrl protein_coding protein_coding MGP_CASTEiJ_T0042487.1 MGP_CASTEiJ_G0021636.1 mouse_genomes_project 15 103442404 103446856 - Krt83 protein_coding retained_intron MGP_CASTEiJ_T0042488.1 MGP_CASTEiJ_G0021636.1 mouse_genomes_project 15 103442404 103453312 - MGP_CASTEiJ_P0042488 Krt83 protein_coding protein_coding MGP_CASTEiJ_T0012730.1 MGP_CASTEiJ_G0010893.1 mouse_genomes_project 15 91845219 91845400 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040355.1 MGP_CASTEiJ_G0020987.1 mouse_genomes_project 15 8135729 8162890 + MGP_CASTEiJ_P0040355 Slc45a2 protein_coding protein_coding MGP_CASTEiJ_T0012697.1 MGP_CASTEiJ_G0010860.1 mouse_genomes_project 15 39684107 39684281 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0040283.1 MGP_CASTEiJ_G0020968.1 mouse_genomes_project 15 6026148 6093304 + MGP_CASTEiJ_P0040283 Ranbp3l protein_coding protein_coding MGP_CASTEiJ_T0040284.1 MGP_CASTEiJ_G0020968.1 mouse_genomes_project 15 6026148 6062843 + MGP_CASTEiJ_P0040284 Ranbp3l protein_coding protein_coding MGP_CASTEiJ_T0040285.1 MGP_CASTEiJ_G0020968.1 mouse_genomes_project 15 6026148 6093966 + MGP_CASTEiJ_P0040285 Ranbp3l protein_coding unknown_likely_coding MGP_CASTEiJ_T0009763.1 MGP_CASTEiJ_G0007951.1 mouse_genomes_project 15 9393723 9393806 + Mir1898 miRNA miRNA MGP_CASTEiJ_T0040849.1 MGP_CASTEiJ_G0021159.1 mouse_genomes_project 15 65403089 65436749 - MGP_CASTEiJ_P0040849 Oc90 protein_coding protein_coding MGP_CASTEiJ_T0040850.1 MGP_CASTEiJ_G0021159.1 mouse_genomes_project 15 65403089 65426451 - MGP_CASTEiJ_P0040850 Oc90 protein_coding protein_coding MGP_CASTEiJ_T0040851.1 MGP_CASTEiJ_G0021159.1 mouse_genomes_project 15 65403089 65436892 - MGP_CASTEiJ_P0040851 Oc90 protein_coding protein_coding MGP_CASTEiJ_T0040852.1 MGP_CASTEiJ_G0021159.1 mouse_genomes_project 15 65403426 65417409 - MGP_CASTEiJ_P0040852 Oc90 protein_coding protein_coding MGP_CASTEiJ_T0040853.1 MGP_CASTEiJ_G0021159.1 mouse_genomes_project 15 65403554 65414589 - MGP_CASTEiJ_P0040853 Oc90 protein_coding protein_coding MGP_CASTEiJ_T0006613.1 MGP_CASTEiJ_G0005471.1 mouse_genomes_project 15 84062434 84071141 - 1700001L05Rik lincRNA lincRNA MGP_CASTEiJ_T0006614.1 MGP_CASTEiJ_G0005471.1 mouse_genomes_project 15 84062442 84070870 - 1700001L05Rik lincRNA lincRNA MGP_CASTEiJ_T0006615.1 MGP_CASTEiJ_G0005471.1 mouse_genomes_project 15 84062468 84071136 - 1700001L05Rik lincRNA lincRNA MGP_CASTEiJ_T0006616.1 MGP_CASTEiJ_G0005471.1 mouse_genomes_project 15 84063526 84069021 - 1700001L05Rik lincRNA lincRNA MGP_CASTEiJ_T0100691.1 MGP_CASTEiJ_G0037604.1 mouse_genomes_project 15 80483725 80483819 - Snord83b snoRNA snoRNA MGP_CASTEiJ_T0042276.1 MGP_CASTEiJ_G0021570.1 mouse_genomes_project 15 100497497 100537854 - MGP_CASTEiJ_P0042276 Kmt2d protein_coding protein_coding MGP_CASTEiJ_T0042277.1 MGP_CASTEiJ_G0021570.1 mouse_genomes_project 15 100497501 100537876 - MGP_CASTEiJ_P0042277 Kmt2d protein_coding protein_coding MGP_CASTEiJ_T0042278.1 MGP_CASTEiJ_G0021570.1 mouse_genomes_project 15 100500119 100502940 - MGP_CASTEiJ_P0042278 Kmt2d protein_coding protein_coding MGP_CASTEiJ_T0042279.1 MGP_CASTEiJ_G0021570.1 mouse_genomes_project 15 100520492 100522138 - MGP_CASTEiJ_P0042279 Kmt2d protein_coding protein_coding MGP_CASTEiJ_T0040921.1 MGP_CASTEiJ_G0021179.1 mouse_genomes_project 15 73389497 73456116 + MGP_CASTEiJ_P0040921 Dennd3 protein_coding protein_coding MGP_CASTEiJ_T0040922.1 MGP_CASTEiJ_G0021179.1 mouse_genomes_project 15 73389609 73455973 + MGP_CASTEiJ_P0040922 Dennd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040923.1 MGP_CASTEiJ_G0021179.1 mouse_genomes_project 15 73389644 73454857 + MGP_CASTEiJ_P0040923 Dennd3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040924.1 MGP_CASTEiJ_G0021179.1 mouse_genomes_project 15 73395411 73400350 + Dennd3 protein_coding processed_transcript MGP_CASTEiJ_T0040925.1 MGP_CASTEiJ_G0021179.1 mouse_genomes_project 15 73399129 73454828 + MGP_CASTEiJ_P0040925 Dennd3 protein_coding protein_coding MGP_CASTEiJ_T0040926.1 MGP_CASTEiJ_G0021179.1 mouse_genomes_project 15 73438707 73451985 + MGP_CASTEiJ_P0040926 Dennd3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040927.1 MGP_CASTEiJ_G0021179.1 mouse_genomes_project 15 73448676 73450889 + Dennd3 protein_coding retained_intron MGP_CASTEiJ_T0040928.1 MGP_CASTEiJ_G0021179.1 mouse_genomes_project 15 73450889 73454773 + Dennd3 protein_coding retained_intron MGP_CASTEiJ_T0012693.1 MGP_CASTEiJ_G0010856.1 mouse_genomes_project 15 35849123 35850561 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012728.1 MGP_CASTEiJ_G0010891.1 mouse_genomes_project 15 86369499 86369907 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099420.1 MGP_CASTEiJ_G0036333.1 mouse_genomes_project 15 1920233 1920336 + Gm25652 snRNA snRNA MGP_CASTEiJ_T0006574.1 MGP_CASTEiJ_G0005444.1 mouse_genomes_project 15 30573492 30577640 - Snhg18 lincRNA lincRNA MGP_CASTEiJ_T0009768.1 MGP_CASTEiJ_G0007956.1 mouse_genomes_project 15 25675101 25675166 + Mir7117 miRNA miRNA MGP_CASTEiJ_T0011056.1 MGP_CASTEiJ_G0009244.1 mouse_genomes_project 15 57814058 57814359 + Gm23789 misc_RNA misc_RNA MGP_CASTEiJ_T0100700.1 MGP_CASTEiJ_G0037613.1 mouse_genomes_project 15 100966568 100966701 - Gm25999 snoRNA snoRNA MGP_CASTEiJ_T0042389.1 MGP_CASTEiJ_G0021606.1 mouse_genomes_project 15 102119401 102119902 + MGP_CASTEiJ_P0042389 protein_coding protein_coding MGP_CASTEiJ_T0003525.1 MGP_CASTEiJ_G0003199.1 mouse_genomes_project 15 102578623 102589811 + Galnt6os antisense antisense MGP_CASTEiJ_T0101851.1 MGP_CASTEiJ_G0038599.1 mouse_genomes_project 15 75723008 75731291 + unitary_pseudogene processed_transcript MGP_CASTEiJ_T0101852.1 MGP_CASTEiJ_G0038599.1 mouse_genomes_project 15 75723354 75726636 + unitary_pseudogene processed_transcript MGP_CASTEiJ_T0101853.1 MGP_CASTEiJ_G0038599.1 mouse_genomes_project 15 75723363 75739082 + unitary_pseudogene processed_transcript MGP_CASTEiJ_T0101854.1 MGP_CASTEiJ_G0038599.1 mouse_genomes_project 15 75724365 75730821 + unitary_pseudogene unitary_pseudogene MGP_CASTEiJ_T0101855.1 MGP_CASTEiJ_G0038599.1 mouse_genomes_project 15 75726655 75730586 + unitary_pseudogene retained_intron MGP_CASTEiJ_T0101856.1 MGP_CASTEiJ_G0038599.1 mouse_genomes_project 15 75726819 75730339 + unitary_pseudogene processed_transcript MGP_CASTEiJ_T0041741.1 MGP_CASTEiJ_G0021411.1 mouse_genomes_project 15 83417150 83421136 - MGP_CASTEiJ_P0041741 Cyp2d26 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041742.1 MGP_CASTEiJ_G0021411.1 mouse_genomes_project 15 83417156 83421208 - MGP_CASTEiJ_P0041742 Cyp2d26 protein_coding protein_coding MGP_CASTEiJ_T0012710.1 MGP_CASTEiJ_G0010873.1 mouse_genomes_project 15 61600632 61603691 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006571.1 MGP_CASTEiJ_G0005442.1 mouse_genomes_project 15 22970926 23016994 - Gm2824 lincRNA lincRNA MGP_CASTEiJ_T0006572.1 MGP_CASTEiJ_G0005442.1 mouse_genomes_project 15 22994036 23016937 - Gm2824 lincRNA lincRNA MGP_CASTEiJ_T0041016.1 MGP_CASTEiJ_G0021209.1 mouse_genomes_project 15 75492159 75492700 - MGP_CASTEiJ_P0041016 protein_coding protein_coding MGP_CASTEiJ_T0041453.1 MGP_CASTEiJ_G0021328.1 mouse_genomes_project 15 79596866 79600598 - MGP_CASTEiJ_P0041453 Slc16a8 protein_coding protein_coding MGP_CASTEiJ_T0042501.1 MGP_CASTEiJ_G0021648.1 mouse_genomes_project 15 103837521 103842885 - MGP_CASTEiJ_P0042501 Krt1 protein_coding protein_coding MGP_CASTEiJ_T0041771.1 MGP_CASTEiJ_G0021417.1 mouse_genomes_project 15 83814407 83845898 - MGP_CASTEiJ_P0041771 Cyb5r3 protein_coding protein_coding MGP_CASTEiJ_T0041772.1 MGP_CASTEiJ_G0021417.1 mouse_genomes_project 15 83817783 83843808 - MGP_CASTEiJ_P0041772 Cyb5r3 protein_coding protein_coding MGP_CASTEiJ_T0041773.1 MGP_CASTEiJ_G0021417.1 mouse_genomes_project 15 83821104 83843479 - MGP_CASTEiJ_P0041773 Cyb5r3 protein_coding protein_coding MGP_CASTEiJ_T0042435.1 MGP_CASTEiJ_G0021622.1 mouse_genomes_project 15 102641802 102702188 + MGP_CASTEiJ_P0042435 Slc4a8 protein_coding protein_coding MGP_CASTEiJ_T0042436.1 MGP_CASTEiJ_G0021622.1 mouse_genomes_project 15 102657239 102706683 + MGP_CASTEiJ_P0042436 Slc4a8 protein_coding protein_coding MGP_CASTEiJ_T0042437.1 MGP_CASTEiJ_G0021622.1 mouse_genomes_project 15 102685397 102688952 + Slc4a8 protein_coding retained_intron MGP_CASTEiJ_T0042438.1 MGP_CASTEiJ_G0021622.1 mouse_genomes_project 15 102694851 102698700 + Slc4a8 protein_coding processed_transcript MGP_CASTEiJ_T0042439.1 MGP_CASTEiJ_G0021622.1 mouse_genomes_project 15 102697024 102698470 + Slc4a8 protein_coding retained_intron MGP_CASTEiJ_T0042556.1 MGP_CASTEiJ_G0021669.1 mouse_genomes_project 15 104386773 104402717 - MGP_CASTEiJ_P0042556 Aaas protein_coding protein_coding MGP_CASTEiJ_T0042510.1 MGP_CASTEiJ_G0021657.1 mouse_genomes_project 15 104121432 104134861 + MGP_CASTEiJ_P0042510 Tns2 protein_coding protein_coding MGP_CASTEiJ_T0042511.1 MGP_CASTEiJ_G0021657.1 mouse_genomes_project 15 104121432 104134851 + MGP_CASTEiJ_P0042511 Tns2 protein_coding protein_coding MGP_CASTEiJ_T0042092.1 MGP_CASTEiJ_G0021509.1 mouse_genomes_project 15 93650005 94030538 + MGP_CASTEiJ_P0042092 Pdzrn4 protein_coding protein_coding MGP_CASTEiJ_T0042093.1 MGP_CASTEiJ_G0021509.1 mouse_genomes_project 15 93865484 94030538 + MGP_CASTEiJ_P0042093 Pdzrn4 protein_coding protein_coding MGP_CASTEiJ_T0042094.1 MGP_CASTEiJ_G0021509.1 mouse_genomes_project 15 93997029 94029792 + MGP_CASTEiJ_P0042094 Pdzrn4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099041.1 MGP_CASTEiJ_G0035958.1 mouse_genomes_project 15 58033465 58034959 - Gm20712 sense_overlapping sense_overlapping MGP_CASTEiJ_T0009806.1 MGP_CASTEiJ_G0007994.1 mouse_genomes_project 15 83248959 83249016 - Gm27463 miRNA miRNA MGP_CASTEiJ_T0009767.1 MGP_CASTEiJ_G0007955.1 mouse_genomes_project 15 23977440 23977501 + Mir7212 miRNA miRNA MGP_CASTEiJ_T0040427.1 MGP_CASTEiJ_G0021008.1 mouse_genomes_project 15 23386843 23387496 + MGP_CASTEiJ_P0040427 Gm5468 protein_coding protein_coding MGP_CASTEiJ_T0041201.1 MGP_CASTEiJ_G0021251.1 mouse_genomes_project 15 76596092 76598123 + MGP_CASTEiJ_P0041201 Scx protein_coding protein_coding MGP_CASTEiJ_T0100699.1 MGP_CASTEiJ_G0037612.1 mouse_genomes_project 15 100841255 100841361 - Gm25183 snoRNA snoRNA MGP_CASTEiJ_T0042030.1 MGP_CASTEiJ_G0021495.1 mouse_genomes_project 15 90572295 90577251 - MGP_CASTEiJ_P0042030 Arsa protein_coding protein_coding MGP_CASTEiJ_T0042031.1 MGP_CASTEiJ_G0021495.1 mouse_genomes_project 15 90572347 90575933 - Arsa protein_coding retained_intron MGP_CASTEiJ_T0042032.1 MGP_CASTEiJ_G0021495.1 mouse_genomes_project 15 90573059 90574091 - MGP_CASTEiJ_P0042032 Arsa protein_coding protein_coding MGP_CASTEiJ_T0042033.1 MGP_CASTEiJ_G0021495.1 mouse_genomes_project 15 90576050 90577237 - Arsa protein_coding processed_transcript MGP_CASTEiJ_T0041731.1 MGP_CASTEiJ_G0021403.1 mouse_genomes_project 15 82974301 82984026 - MGP_CASTEiJ_P0041731 Cyp2d22 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042283.1 MGP_CASTEiJ_G0021572.1 mouse_genomes_project 15 100562137 100568783 - MGP_CASTEiJ_P0042283 Dhh protein_coding protein_coding MGP_CASTEiJ_T0042395.1 MGP_CASTEiJ_G0021610.1 mouse_genomes_project 15 102136961 102146069 + MGP_CASTEiJ_P0042395 protein_coding protein_coding MGP_CASTEiJ_T0041625.1 MGP_CASTEiJ_G0021372.1 mouse_genomes_project 15 81970948 81984981 + MGP_CASTEiJ_P0041625 Rbx1 protein_coding protein_coding MGP_CASTEiJ_T0100692.1 MGP_CASTEiJ_G0037605.1 mouse_genomes_project 15 80892341 80892478 - Gm23220 snoRNA snoRNA MGP_CASTEiJ_T0041626.1 MGP_CASTEiJ_G0021373.1 mouse_genomes_project 15 82111141 82114129 + Ep300 protein_coding processed_transcript MGP_CASTEiJ_T0041627.1 MGP_CASTEiJ_G0021373.1 mouse_genomes_project 15 82111187 82182355 + MGP_CASTEiJ_P0041627 Ep300 protein_coding protein_coding MGP_CASTEiJ_T0041628.1 MGP_CASTEiJ_G0021373.1 mouse_genomes_project 15 82112007 82151964 + Ep300 protein_coding retained_intron MGP_CASTEiJ_T0041629.1 MGP_CASTEiJ_G0021373.1 mouse_genomes_project 15 82141371 82151263 + MGP_CASTEiJ_P0041629 Ep300 protein_coding protein_coding MGP_CASTEiJ_T0041630.1 MGP_CASTEiJ_G0021373.1 mouse_genomes_project 15 82141389 82144413 + Ep300 protein_coding retained_intron MGP_CASTEiJ_T0041631.1 MGP_CASTEiJ_G0021373.1 mouse_genomes_project 15 82148899 82154200 + MGP_CASTEiJ_P0041631 Ep300 protein_coding protein_coding MGP_CASTEiJ_T0041632.1 MGP_CASTEiJ_G0021373.1 mouse_genomes_project 15 82156941 82157381 + MGP_CASTEiJ_P0041632 Ep300 protein_coding protein_coding MGP_CASTEiJ_T0041633.1 MGP_CASTEiJ_G0021373.1 mouse_genomes_project 15 82163460 82169819 + Ep300 protein_coding retained_intron MGP_CASTEiJ_T0041634.1 MGP_CASTEiJ_G0021373.1 mouse_genomes_project 15 82165374 82173893 + Ep300 protein_coding retained_intron MGP_CASTEiJ_T0041635.1 MGP_CASTEiJ_G0021373.1 mouse_genomes_project 15 82174105 82178436 + Ep300 protein_coding retained_intron MGP_CASTEiJ_T0041344.1 MGP_CASTEiJ_G0021296.1 mouse_genomes_project 15 78390643 78403750 - MGP_CASTEiJ_P0041344 Pvalb protein_coding protein_coding MGP_CASTEiJ_T0041345.1 MGP_CASTEiJ_G0021296.1 mouse_genomes_project 15 78390646 78405911 - MGP_CASTEiJ_P0041345 Pvalb protein_coding protein_coding MGP_CASTEiJ_T0099462.1 MGP_CASTEiJ_G0036375.1 mouse_genomes_project 15 90081397 90081556 + Gm23737 snRNA snRNA MGP_CASTEiJ_T0041778.1 MGP_CASTEiJ_G0021420.1 mouse_genomes_project 15 84081584 84175264 - MGP_CASTEiJ_P0041778 Pacsin2 protein_coding protein_coding MGP_CASTEiJ_T0100686.1 MGP_CASTEiJ_G0037599.1 mouse_genomes_project 15 62185836 62185970 + Gm22521 snoRNA snoRNA MGP_CASTEiJ_T0009795.1 MGP_CASTEiJ_G0007983.1 mouse_genomes_project 15 79326665 79326727 + Mir6956 miRNA miRNA MGP_CASTEiJ_T0041259.1 MGP_CASTEiJ_G0021268.1 mouse_genomes_project 15 76859861 76862825 + MGP_CASTEiJ_P0041259 Lrrc14 protein_coding protein_coding MGP_CASTEiJ_T0041260.1 MGP_CASTEiJ_G0021268.1 mouse_genomes_project 15 76859876 76866952 + MGP_CASTEiJ_P0041260 Lrrc14 protein_coding protein_coding MGP_CASTEiJ_T0041261.1 MGP_CASTEiJ_G0021268.1 mouse_genomes_project 15 76859877 76864290 + MGP_CASTEiJ_P0041261 Lrrc14 protein_coding protein_coding MGP_CASTEiJ_T0041262.1 MGP_CASTEiJ_G0021268.1 mouse_genomes_project 15 76859881 76864339 + MGP_CASTEiJ_P0041262 Lrrc14 protein_coding protein_coding MGP_CASTEiJ_T0041263.1 MGP_CASTEiJ_G0021268.1 mouse_genomes_project 15 76859881 76864307 + MGP_CASTEiJ_P0041263 Lrrc14 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041264.1 MGP_CASTEiJ_G0021268.1 mouse_genomes_project 15 76859887 76862178 + MGP_CASTEiJ_P0041264 Lrrc14 protein_coding protein_coding MGP_CASTEiJ_T0041265.1 MGP_CASTEiJ_G0021268.1 mouse_genomes_project 15 76859901 76864385 + Lrrc14 protein_coding retained_intron MGP_CASTEiJ_T0041266.1 MGP_CASTEiJ_G0021268.1 mouse_genomes_project 15 76859911 76865903 + Lrrc14 protein_coding retained_intron MGP_CASTEiJ_T0041267.1 MGP_CASTEiJ_G0021268.1 mouse_genomes_project 15 76859911 76864004 + Lrrc14 protein_coding processed_transcript MGP_CASTEiJ_T0041268.1 MGP_CASTEiJ_G0021268.1 mouse_genomes_project 15 76859969 76864346 + MGP_CASTEiJ_P0041268 Lrrc14 protein_coding protein_coding MGP_CASTEiJ_T0040327.1 MGP_CASTEiJ_G0020978.1 mouse_genomes_project 15 7438334 7477908 + MGP_CASTEiJ_P0040327 Gm21973 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040909.1 MGP_CASTEiJ_G0021175.1 mouse_genomes_project 15 72376181 72866337 - MGP_CASTEiJ_P0040909 Trappc9 protein_coding protein_coding MGP_CASTEiJ_T0040910.1 MGP_CASTEiJ_G0021175.1 mouse_genomes_project 15 72376181 72860958 - MGP_CASTEiJ_P0040910 Trappc9 protein_coding protein_coding MGP_CASTEiJ_T0040911.1 MGP_CASTEiJ_G0021175.1 mouse_genomes_project 15 72600035 72866337 - MGP_CASTEiJ_P0040911 Trappc9 protein_coding protein_coding MGP_CASTEiJ_T0040912.1 MGP_CASTEiJ_G0021175.1 mouse_genomes_project 15 72658591 72866337 - MGP_CASTEiJ_P0040912 Trappc9 protein_coding protein_coding MGP_CASTEiJ_T0040913.1 MGP_CASTEiJ_G0021175.1 mouse_genomes_project 15 72712262 72866164 - MGP_CASTEiJ_P0040913 Trappc9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0016698.1 MGP_CASTEiJ_G0014603.1 mouse_genomes_project 15 4346235 4360612 + Gm16029 processed_transcript processed_transcript MGP_CASTEiJ_T0041471.1 MGP_CASTEiJ_G0021331.1 mouse_genomes_project 15 79707803 79720498 + MGP_CASTEiJ_P0041471 Maff protein_coding protein_coding MGP_CASTEiJ_T0041472.1 MGP_CASTEiJ_G0021331.1 mouse_genomes_project 15 79708323 79720498 + MGP_CASTEiJ_P0041472 Maff protein_coding protein_coding MGP_CASTEiJ_T0041214.1 MGP_CASTEiJ_G0021255.1 mouse_genomes_project 15 76675920 76678938 - MGP_CASTEiJ_P0041214 Fbxl6 protein_coding protein_coding MGP_CASTEiJ_T0099449.1 MGP_CASTEiJ_G0036362.1 mouse_genomes_project 15 72510345 72510415 - Gm28020 snRNA snRNA MGP_CASTEiJ_T0042670.1 MGP_CASTEiJ_G0021706.1 mouse_genomes_project 15 105868479 105934835 + MGP_CASTEiJ_P0042670 protein_coding protein_coding MGP_CASTEiJ_T0042408.1 MGP_CASTEiJ_G0021614.1 mouse_genomes_project 15 102357757 102374753 - MGP_CASTEiJ_P0042408 Csrnp2 protein_coding protein_coding MGP_CASTEiJ_T0011053.1 MGP_CASTEiJ_G0009241.1 mouse_genomes_project 15 15642639 15642947 + Gm22895 misc_RNA misc_RNA MGP_CASTEiJ_T0100657.1 MGP_CASTEiJ_G0037570.1 mouse_genomes_project 15 8522411 8522538 - Gm24844 snoRNA snoRNA MGP_CASTEiJ_T0009825.1 MGP_CASTEiJ_G0008013.1 mouse_genomes_project 15 103301631 103301714 + Mir1941 miRNA miRNA MGP_CASTEiJ_T0042147.1 MGP_CASTEiJ_G0021528.1 mouse_genomes_project 15 98200911 98214005 - MGP_CASTEiJ_P0042147 Slc38a2 protein_coding protein_coding MGP_CASTEiJ_T0003483.1 MGP_CASTEiJ_G0003166.1 mouse_genomes_project 15 38236078 38251915 + Gm16291 antisense antisense MGP_CASTEiJ_T0009811.1 MGP_CASTEiJ_G0007999.1 mouse_genomes_project 15 85765723 85765821 - Mir1249 miRNA miRNA MGP_CASTEiJ_T0041284.1 MGP_CASTEiJ_G0021272.1 mouse_genomes_project 15 77030988 77043763 + MGP_CASTEiJ_P0041284 Zfp7 protein_coding protein_coding MGP_CASTEiJ_T0006582.1 MGP_CASTEiJ_G0005452.1 mouse_genomes_project 15 40307807 40348839 - Gm26854 lincRNA lincRNA MGP_CASTEiJ_T0009788.1 MGP_CASTEiJ_G0007976.1 mouse_genomes_project 15 76340633 76340696 - Mir1942 miRNA miRNA MGP_CASTEiJ_T0041715.1 MGP_CASTEiJ_G0021396.1 mouse_genomes_project 15 82849451 82858502 + MGP_CASTEiJ_P0041715 1500009C09Rik protein_coding protein_coding MGP_CASTEiJ_T0041716.1 MGP_CASTEiJ_G0021396.1 mouse_genomes_project 15 82852641 82858517 + MGP_CASTEiJ_P0041716 1500009C09Rik protein_coding protein_coding MGP_CASTEiJ_T0000895.1 MGP_CASTEiJ_G0000834.1 mouse_genomes_project 15 5682213 5685190 - TEC TEC MGP_CASTEiJ_T0042621.1 MGP_CASTEiJ_G0021683.1 mouse_genomes_project 15 105015503 105025127 + MGP_CASTEiJ_P0042621 Hoxc13 protein_coding protein_coding MGP_CASTEiJ_T0016710.1 MGP_CASTEiJ_G0014607.1 mouse_genomes_project 15 57428129 57543920 + Gm15943 processed_transcript processed_transcript MGP_CASTEiJ_T0040966.1 MGP_CASTEiJ_G0021187.1 mouse_genomes_project 15 74598391 74601870 - MGP_CASTEiJ_P0040966 Arc protein_coding protein_coding MGP_CASTEiJ_T0040967.1 MGP_CASTEiJ_G0021187.1 mouse_genomes_project 15 74598391 74601872 - MGP_CASTEiJ_P0040967 Arc protein_coding protein_coding MGP_CASTEiJ_T0040174.1 MGP_CASTEiJ_G0020941.1 mouse_genomes_project 15 223061 499329 - MGP_CASTEiJ_P0040174 Ghr protein_coding protein_coding MGP_CASTEiJ_T0040175.1 MGP_CASTEiJ_G0020941.1 mouse_genomes_project 15 224333 497878 - MGP_CASTEiJ_P0040175 Ghr protein_coding protein_coding MGP_CASTEiJ_T0040176.1 MGP_CASTEiJ_G0020941.1 mouse_genomes_project 15 233974 499287 - MGP_CASTEiJ_P0040176 Ghr protein_coding protein_coding MGP_CASTEiJ_T0040177.1 MGP_CASTEiJ_G0020941.1 mouse_genomes_project 15 233988 388718 - MGP_CASTEiJ_P0040177 Ghr protein_coding protein_coding MGP_CASTEiJ_T0040178.1 MGP_CASTEiJ_G0020941.1 mouse_genomes_project 15 239905 498632 - MGP_CASTEiJ_P0040178 Ghr protein_coding protein_coding MGP_CASTEiJ_T0040179.1 MGP_CASTEiJ_G0020941.1 mouse_genomes_project 15 247765 499287 - Ghr protein_coding processed_transcript MGP_CASTEiJ_T0040180.1 MGP_CASTEiJ_G0020941.1 mouse_genomes_project 15 252021 499311 - Ghr protein_coding retained_intron MGP_CASTEiJ_T0040181.1 MGP_CASTEiJ_G0020941.1 mouse_genomes_project 15 253303 499310 - Ghr protein_coding processed_transcript MGP_CASTEiJ_T0040182.1 MGP_CASTEiJ_G0020941.1 mouse_genomes_project 15 292889 499647 - Ghr protein_coding retained_intron MGP_CASTEiJ_T0040183.1 MGP_CASTEiJ_G0020941.1 mouse_genomes_project 15 461389 499286 - Ghr protein_coding processed_transcript MGP_CASTEiJ_T0040892.1 MGP_CASTEiJ_G0021169.1 mouse_genomes_project 15 66670064 66705933 - MGP_CASTEiJ_P0040892 St3gal1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041369.1 MGP_CASTEiJ_G0021303.1 mouse_genomes_project 15 78721527 78752875 - MGP_CASTEiJ_P0041369 Tmprss6 protein_coding protein_coding MGP_CASTEiJ_T0009770.1 MGP_CASTEiJ_G0007958.1 mouse_genomes_project 15 34018332 34018420 - Mir599 miRNA miRNA MGP_CASTEiJ_T0041571.1 MGP_CASTEiJ_G0021359.1 mouse_genomes_project 15 80886498 81004469 - MGP_CASTEiJ_P0041571 Enthd1 protein_coding protein_coding MGP_CASTEiJ_T0041273.1 MGP_CASTEiJ_G0021270.1 mouse_genomes_project 15 76873644 76966815 - MGP_CASTEiJ_P0041273 Arhgap39 protein_coding protein_coding MGP_CASTEiJ_T0041274.1 MGP_CASTEiJ_G0021270.1 mouse_genomes_project 15 76873644 76966728 - MGP_CASTEiJ_P0041274 Arhgap39 protein_coding protein_coding MGP_CASTEiJ_T0041275.1 MGP_CASTEiJ_G0021270.1 mouse_genomes_project 15 76874519 76875263 - Arhgap39 protein_coding retained_intron MGP_CASTEiJ_T0041276.1 MGP_CASTEiJ_G0021270.1 mouse_genomes_project 15 76883074 76966774 - Arhgap39 protein_coding retained_intron MGP_CASTEiJ_T0041277.1 MGP_CASTEiJ_G0021270.1 mouse_genomes_project 15 76901245 76943183 - MGP_CASTEiJ_P0041277 Arhgap39 protein_coding protein_coding MGP_CASTEiJ_T0041278.1 MGP_CASTEiJ_G0021270.1 mouse_genomes_project 15 76907606 76966751 - MGP_CASTEiJ_P0041278 Arhgap39 protein_coding protein_coding MGP_CASTEiJ_T0041279.1 MGP_CASTEiJ_G0021270.1 mouse_genomes_project 15 76907610 76966641 - MGP_CASTEiJ_P0041279 Arhgap39 protein_coding protein_coding MGP_CASTEiJ_T0041280.1 MGP_CASTEiJ_G0021270.1 mouse_genomes_project 15 76914547 76966786 - Arhgap39 protein_coding retained_intron MGP_CASTEiJ_T0041281.1 MGP_CASTEiJ_G0021270.1 mouse_genomes_project 15 76914996 76966615 - MGP_CASTEiJ_P0041281 Arhgap39 protein_coding protein_coding MGP_CASTEiJ_T0041282.1 MGP_CASTEiJ_G0021270.1 mouse_genomes_project 15 76915012 76966721 - MGP_CASTEiJ_P0041282 Arhgap39 protein_coding protein_coding MGP_CASTEiJ_T0040233.1 MGP_CASTEiJ_G0020956.1 mouse_genomes_project 15 3383885 3441028 + MGP_CASTEiJ_P0040233 C9 protein_coding protein_coding MGP_CASTEiJ_T0040234.1 MGP_CASTEiJ_G0020956.1 mouse_genomes_project 15 3383941 3405903 + MGP_CASTEiJ_P0040234 C9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040235.1 MGP_CASTEiJ_G0020956.1 mouse_genomes_project 15 3430103 3431878 + C9 protein_coding retained_intron MGP_CASTEiJ_T0040236.1 MGP_CASTEiJ_G0020956.1 mouse_genomes_project 15 3430541 3441021 + MGP_CASTEiJ_P0040236 C9 protein_coding protein_coding MGP_CASTEiJ_T0009794.1 MGP_CASTEiJ_G0007982.1 mouse_genomes_project 15 79213403 79213477 + Mir6955 miRNA miRNA MGP_CASTEiJ_T0040795.1 MGP_CASTEiJ_G0021143.1 mouse_genomes_project 15 58977004 58985221 + MGP_CASTEiJ_P0040795 Trib1 protein_coding protein_coding MGP_CASTEiJ_T0040796.1 MGP_CASTEiJ_G0021143.1 mouse_genomes_project 15 58977307 58982361 + MGP_CASTEiJ_P0040796 Trib1 protein_coding protein_coding MGP_CASTEiJ_T0006586.1 MGP_CASTEiJ_G0005456.1 mouse_genomes_project 15 44996641 45048432 + 1700022A22Rik lincRNA lincRNA MGP_CASTEiJ_T0006587.1 MGP_CASTEiJ_G0005456.1 mouse_genomes_project 15 44996653 45031687 + 1700022A22Rik lincRNA lincRNA MGP_CASTEiJ_T0006588.1 MGP_CASTEiJ_G0005456.1 mouse_genomes_project 15 44996667 45048481 + 1700022A22Rik lincRNA lincRNA MGP_CASTEiJ_T0006581.1 MGP_CASTEiJ_G0005451.1 mouse_genomes_project 15 38966056 38983375 - Gm16294 lincRNA lincRNA MGP_CASTEiJ_T0009833.1 MGP_CASTEiJ_G0008021.1 mouse_genomes_project 15 105409243 105409340 + Mir148b miRNA miRNA MGP_CASTEiJ_T0042641.1 MGP_CASTEiJ_G0021694.1 mouse_genomes_project 15 105360817 105366547 + MGP_CASTEiJ_P0042641 Hnrnpa1 protein_coding protein_coding MGP_CASTEiJ_T0041952.1 MGP_CASTEiJ_G0021475.1 mouse_genomes_project 15 90179490 90184846 - Hdac10 protein_coding processed_transcript MGP_CASTEiJ_T0041953.1 MGP_CASTEiJ_G0021475.1 mouse_genomes_project 15 90179490 90184893 - MGP_CASTEiJ_P0041953 Hdac10 protein_coding protein_coding MGP_CASTEiJ_T0041954.1 MGP_CASTEiJ_G0021475.1 mouse_genomes_project 15 90179492 90184854 - Hdac10 protein_coding retained_intron MGP_CASTEiJ_T0041955.1 MGP_CASTEiJ_G0021475.1 mouse_genomes_project 15 90179492 90184844 - Hdac10 protein_coding retained_intron MGP_CASTEiJ_T0041956.1 MGP_CASTEiJ_G0021475.1 mouse_genomes_project 15 90179494 90184872 - Hdac10 protein_coding retained_intron MGP_CASTEiJ_T0041957.1 MGP_CASTEiJ_G0021475.1 mouse_genomes_project 15 90179755 90184641 - MGP_CASTEiJ_P0041957 Hdac10 protein_coding protein_coding MGP_CASTEiJ_T0041958.1 MGP_CASTEiJ_G0021475.1 mouse_genomes_project 15 90179857 90181878 - Hdac10 protein_coding processed_transcript MGP_CASTEiJ_T0041959.1 MGP_CASTEiJ_G0021475.1 mouse_genomes_project 15 90182171 90183683 - Hdac10 protein_coding processed_transcript MGP_CASTEiJ_T0040459.1 MGP_CASTEiJ_G0021018.1 mouse_genomes_project 15 26290748 26642235 + MGP_CASTEiJ_P0040459 Dnah5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040460.1 MGP_CASTEiJ_G0021018.1 mouse_genomes_project 15 26290864 26457542 + MGP_CASTEiJ_P0040460 Dnah5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040461.1 MGP_CASTEiJ_G0021018.1 mouse_genomes_project 15 26346362 26622129 + MGP_CASTEiJ_P0040461 Dnah5 protein_coding protein_coding MGP_CASTEiJ_T0042011.1 MGP_CASTEiJ_G0021490.1 mouse_genomes_project 15 90469503 90493045 - MGP_CASTEiJ_P0042011 Syce3 protein_coding protein_coding MGP_CASTEiJ_T0042012.1 MGP_CASTEiJ_G0021490.1 mouse_genomes_project 15 90469503 90493285 - MGP_CASTEiJ_P0042012 Syce3 protein_coding protein_coding MGP_CASTEiJ_T0042295.1 MGP_CASTEiJ_G0021578.1 mouse_genomes_project 15 100783047 100786824 - MGP_CASTEiJ_P0042295 C1ql4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042296.1 MGP_CASTEiJ_G0021578.1 mouse_genomes_project 15 100783663 100786797 - MGP_CASTEiJ_P0042296 C1ql4 protein_coding protein_coding MGP_CASTEiJ_T0000894.1 MGP_CASTEiJ_G0000833.1 mouse_genomes_project 15 4629805 4630182 - TEC TEC MGP_CASTEiJ_T0041509.1 MGP_CASTEiJ_G0021344.1 mouse_genomes_project 15 80149913 80166568 - MGP_CASTEiJ_P0041509 Dnal4 protein_coding protein_coding MGP_CASTEiJ_T0041510.1 MGP_CASTEiJ_G0021344.1 mouse_genomes_project 15 80149916 80166652 - MGP_CASTEiJ_P0041510 Dnal4 protein_coding protein_coding MGP_CASTEiJ_T0041511.1 MGP_CASTEiJ_G0021344.1 mouse_genomes_project 15 80153455 80169163 - Dnal4 protein_coding processed_transcript MGP_CASTEiJ_T0041512.1 MGP_CASTEiJ_G0021344.1 mouse_genomes_project 15 80166756 80170040 - Dnal4 protein_coding processed_transcript MGP_CASTEiJ_T0041396.1 MGP_CASTEiJ_G0021316.1 mouse_genomes_project 15 79249304 79252876 + MGP_CASTEiJ_P0041396 Lgals1 protein_coding protein_coding MGP_CASTEiJ_T0040384.1 MGP_CASTEiJ_G0020997.1 mouse_genomes_project 15 9594463 9852478 - MGP_CASTEiJ_P0040384 Pdzd2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0040385.1 MGP_CASTEiJ_G0020997.1 mouse_genomes_project 15 9602695 9852434 - MGP_CASTEiJ_P0040385 Pdzd2 protein_coding protein_coding MGP_CASTEiJ_T0040386.1 MGP_CASTEiJ_G0020997.1 mouse_genomes_project 15 9650848 9653591 - Pdzd2 protein_coding retained_intron MGP_CASTEiJ_T0040387.1 MGP_CASTEiJ_G0020997.1 mouse_genomes_project 15 9657279 9666060 - Pdzd2 protein_coding retained_intron MGP_CASTEiJ_T0040388.1 MGP_CASTEiJ_G0020997.1 mouse_genomes_project 15 9659630 9806916 - MGP_CASTEiJ_P0040388 Pdzd2 protein_coding protein_coding MGP_CASTEiJ_T0040389.1 MGP_CASTEiJ_G0020997.1 mouse_genomes_project 15 9716108 9754471 - MGP_CASTEiJ_P0040389 Pdzd2 protein_coding protein_coding MGP_CASTEiJ_T0040390.1 MGP_CASTEiJ_G0020997.1 mouse_genomes_project 15 9716148 9807516 - MGP_CASTEiJ_P0040390 Pdzd2 protein_coding protein_coding MGP_CASTEiJ_T0040391.1 MGP_CASTEiJ_G0020997.1 mouse_genomes_project 15 9785167 9807424 - Pdzd2 protein_coding processed_transcript MGP_CASTEiJ_T0040392.1 MGP_CASTEiJ_G0020997.1 mouse_genomes_project 15 9802484 9806919 - Pdzd2 protein_coding retained_intron MGP_CASTEiJ_T0040393.1 MGP_CASTEiJ_G0020997.1 mouse_genomes_project 15 9806701 9807871 - Pdzd2 protein_coding retained_intron MGP_CASTEiJ_T0040394.1 MGP_CASTEiJ_G0020997.1 mouse_genomes_project 15 9848369 9859983 - Pdzd2 protein_coding processed_transcript MGP_CASTEiJ_T0042027.1 MGP_CASTEiJ_G0021493.1 mouse_genomes_project 15 90520078 90521358 + MGP_CASTEiJ_P0042027 C730034F03Rik protein_coding protein_coding MGP_CASTEiJ_T0099436.1 MGP_CASTEiJ_G0036349.1 mouse_genomes_project 15 47742291 47742376 - Gm23185 snRNA snRNA MGP_CASTEiJ_T0042407.1 MGP_CASTEiJ_G0021613.1 mouse_genomes_project 15 102347191 102357442 + MGP_CASTEiJ_P0042407 Letmd1 protein_coding protein_coding MGP_CASTEiJ_T0000900.1 MGP_CASTEiJ_G0000839.1 mouse_genomes_project 15 61341472 61345548 - TEC TEC MGP_CASTEiJ_T0099440.1 MGP_CASTEiJ_G0036353.1 mouse_genomes_project 15 54350572 54350634 - Gm26296 snRNA snRNA MGP_CASTEiJ_T0040731.1 MGP_CASTEiJ_G0021116.1 mouse_genomes_project 15 54748035 55019823 - MGP_CASTEiJ_P0040731 Sntb1 protein_coding protein_coding MGP_CASTEiJ_T0040732.1 MGP_CASTEiJ_G0021116.1 mouse_genomes_project 15 54903773 55019596 - MGP_CASTEiJ_P0040732 Sntb1 protein_coding protein_coding MGP_CASTEiJ_T0040733.1 MGP_CASTEiJ_G0021116.1 mouse_genomes_project 15 54904747 55019184 - Sntb1 protein_coding processed_transcript MGP_CASTEiJ_T0040809.1 MGP_CASTEiJ_G0021151.1 mouse_genomes_project 15 63241463 63249134 - MGP_CASTEiJ_P0040809 protein_coding protein_coding MGP_CASTEiJ_T0042042.1 MGP_CASTEiJ_G0021498.1 mouse_genomes_project 15 90686549 90696234 - MGP_CASTEiJ_P0042042 Rabl2 protein_coding protein_coding MGP_CASTEiJ_T0042043.1 MGP_CASTEiJ_G0021498.1 mouse_genomes_project 15 90686553 90696176 - Rabl2 protein_coding retained_intron MGP_CASTEiJ_T0042044.1 MGP_CASTEiJ_G0021498.1 mouse_genomes_project 15 90686553 90696175 - MGP_CASTEiJ_P0042044 Rabl2 protein_coding protein_coding MGP_CASTEiJ_T0042045.1 MGP_CASTEiJ_G0021498.1 mouse_genomes_project 15 90687061 90694715 - MGP_CASTEiJ_P0042045 Rabl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042046.1 MGP_CASTEiJ_G0021498.1 mouse_genomes_project 15 90687330 90688570 - Rabl2 protein_coding retained_intron MGP_CASTEiJ_T0042047.1 MGP_CASTEiJ_G0021498.1 mouse_genomes_project 15 90687372 90696201 - MGP_CASTEiJ_P0042047 Rabl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042048.1 MGP_CASTEiJ_G0021498.1 mouse_genomes_project 15 90687400 90696150 - MGP_CASTEiJ_P0042048 Rabl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042049.1 MGP_CASTEiJ_G0021498.1 mouse_genomes_project 15 90687415 90688345 - MGP_CASTEiJ_P0042049 Rabl2 protein_coding protein_coding MGP_CASTEiJ_T0042050.1 MGP_CASTEiJ_G0021498.1 mouse_genomes_project 15 90687661 90696197 - MGP_CASTEiJ_P0042050 Rabl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042051.1 MGP_CASTEiJ_G0021498.1 mouse_genomes_project 15 90690298 90696216 - Rabl2 protein_coding retained_intron MGP_CASTEiJ_T0042052.1 MGP_CASTEiJ_G0021498.1 mouse_genomes_project 15 90691938 90696187 - Rabl2 protein_coding processed_transcript MGP_CASTEiJ_T0040754.1 MGP_CASTEiJ_G0021124.1 mouse_genomes_project 15 57214888 57270513 - MGP_CASTEiJ_P0040754 Gm29394 protein_coding protein_coding MGP_CASTEiJ_T0040757.1 MGP_CASTEiJ_G0021124.1 mouse_genomes_project 15 57217583 57270295 - MGP_CASTEiJ_P0040757 Gm29394 protein_coding protein_coding MGP_CASTEiJ_T0040761.1 MGP_CASTEiJ_G0021124.1 mouse_genomes_project 15 57235768 57270271 - MGP_CASTEiJ_P0040761 Gm29394 protein_coding protein_coding MGP_CASTEiJ_T0040762.1 MGP_CASTEiJ_G0021124.1 mouse_genomes_project 15 57235887 57270294 - MGP_CASTEiJ_P0040762 Gm29394 protein_coding protein_coding MGP_CASTEiJ_T0040601.1 MGP_CASTEiJ_G0021066.1 mouse_genomes_project 15 36995766 37029683 - MGP_CASTEiJ_P0040601 Azin1 protein_coding protein_coding MGP_CASTEiJ_T0040602.1 MGP_CASTEiJ_G0021066.1 mouse_genomes_project 15 36995892 37029533 - MGP_CASTEiJ_P0040602 Azin1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0040603.1 MGP_CASTEiJ_G0021066.1 mouse_genomes_project 15 37000319 37005201 - Azin1 protein_coding retained_intron MGP_CASTEiJ_T0040604.1 MGP_CASTEiJ_G0021066.1 mouse_genomes_project 15 37008472 37028526 - MGP_CASTEiJ_P0040604 Azin1 protein_coding protein_coding MGP_CASTEiJ_T0040605.1 MGP_CASTEiJ_G0021066.1 mouse_genomes_project 15 37010253 37028585 - MGP_CASTEiJ_P0040605 Azin1 protein_coding protein_coding MGP_CASTEiJ_T0040606.1 MGP_CASTEiJ_G0021066.1 mouse_genomes_project 15 37024875 37029614 - Azin1 protein_coding processed_transcript MGP_CASTEiJ_T0100663.1 MGP_CASTEiJ_G0037576.1 mouse_genomes_project 15 28163102 28163236 - Gm23033 snoRNA snoRNA MGP_CASTEiJ_T0040219.1 MGP_CASTEiJ_G0020955.1 mouse_genomes_project 15 3226912 3374176 + Dab2 protein_coding processed_transcript MGP_CASTEiJ_T0040220.1 MGP_CASTEiJ_G0020955.1 mouse_genomes_project 15 3226912 3379295 + MGP_CASTEiJ_P0040220 Dab2 protein_coding protein_coding MGP_CASTEiJ_T0040221.1 MGP_CASTEiJ_G0020955.1 mouse_genomes_project 15 3226937 3355734 + MGP_CASTEiJ_P0040221 Dab2 protein_coding protein_coding MGP_CASTEiJ_T0040222.1 MGP_CASTEiJ_G0020955.1 mouse_genomes_project 15 3226956 3366528 + MGP_CASTEiJ_P0040222 Dab2 protein_coding protein_coding MGP_CASTEiJ_T0040223.1 MGP_CASTEiJ_G0020955.1 mouse_genomes_project 15 3226992 3266853 + Dab2 protein_coding processed_transcript MGP_CASTEiJ_T0040224.1 MGP_CASTEiJ_G0020955.1 mouse_genomes_project 15 3324413 3379288 + MGP_CASTEiJ_P0040224 Dab2 protein_coding protein_coding MGP_CASTEiJ_T0040225.1 MGP_CASTEiJ_G0020955.1 mouse_genomes_project 15 3324563 3379288 + MGP_CASTEiJ_P0040225 Dab2 protein_coding protein_coding MGP_CASTEiJ_T0040226.1 MGP_CASTEiJ_G0020955.1 mouse_genomes_project 15 3324591 3378211 + MGP_CASTEiJ_P0040226 Dab2 protein_coding protein_coding MGP_CASTEiJ_T0040227.1 MGP_CASTEiJ_G0020955.1 mouse_genomes_project 15 3324592 3378231 + MGP_CASTEiJ_P0040227 Dab2 protein_coding protein_coding MGP_CASTEiJ_T0040228.1 MGP_CASTEiJ_G0020955.1 mouse_genomes_project 15 3324594 3366528 + MGP_CASTEiJ_P0040228 Dab2 protein_coding protein_coding MGP_CASTEiJ_T0040229.1 MGP_CASTEiJ_G0020955.1 mouse_genomes_project 15 3326892 3356941 + MGP_CASTEiJ_P0040229 Dab2 protein_coding protein_coding MGP_CASTEiJ_T0040230.1 MGP_CASTEiJ_G0020955.1 mouse_genomes_project 15 3327946 3358491 + MGP_CASTEiJ_P0040230 Dab2 protein_coding protein_coding MGP_CASTEiJ_T0040231.1 MGP_CASTEiJ_G0020955.1 mouse_genomes_project 15 3360998 3377490 + MGP_CASTEiJ_P0040231 Dab2 protein_coding protein_coding MGP_CASTEiJ_T0040232.1 MGP_CASTEiJ_G0020955.1 mouse_genomes_project 15 3361919 3363781 + Dab2 protein_coding retained_intron MGP_CASTEiJ_T0003506.1 MGP_CASTEiJ_G0003184.1 mouse_genomes_project 15 87006175 87008608 - Gm15722 antisense antisense MGP_CASTEiJ_T0041804.1 MGP_CASTEiJ_G0021428.1 mouse_genomes_project 15 84606331 84818648 - MGP_CASTEiJ_P0041804 Efcab6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041805.1 MGP_CASTEiJ_G0021428.1 mouse_genomes_project 15 84606806 84818591 - MGP_CASTEiJ_P0041805 Efcab6 protein_coding protein_coding MGP_CASTEiJ_T0041806.1 MGP_CASTEiJ_G0021428.1 mouse_genomes_project 15 84606808 84662360 - Efcab6 protein_coding processed_transcript MGP_CASTEiJ_T0041807.1 MGP_CASTEiJ_G0021428.1 mouse_genomes_project 15 84606861 84675552 - Efcab6 protein_coding retained_intron MGP_CASTEiJ_T0041808.1 MGP_CASTEiJ_G0021428.1 mouse_genomes_project 15 84612513 84627093 - Efcab6 protein_coding processed_transcript MGP_CASTEiJ_T0041809.1 MGP_CASTEiJ_G0021428.1 mouse_genomes_project 15 84667232 84689845 - MGP_CASTEiJ_P0041809 Efcab6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041810.1 MGP_CASTEiJ_G0021428.1 mouse_genomes_project 15 84710673 84713321 - Efcab6 protein_coding processed_transcript MGP_CASTEiJ_T0041811.1 MGP_CASTEiJ_G0021428.1 mouse_genomes_project 15 84717938 84735367 - Efcab6 protein_coding processed_transcript MGP_CASTEiJ_T0041812.1 MGP_CASTEiJ_G0021428.1 mouse_genomes_project 15 84767938 84818621 - Efcab6 protein_coding processed_transcript MGP_CASTEiJ_T0006637.1 MGP_CASTEiJ_G0005486.1 mouse_genomes_project 15 104308094 104311650 + lincRNA lincRNA MGP_CASTEiJ_T0041012.1 MGP_CASTEiJ_G0021206.1 mouse_genomes_project 15 75130139 75132523 + protein_coding retained_intron MGP_CASTEiJ_T0016723.1 MGP_CASTEiJ_G0014615.1 mouse_genomes_project 15 77616801 77620987 + processed_transcript retained_intron MGP_CASTEiJ_T0100690.1 MGP_CASTEiJ_G0037603.1 mouse_genomes_project 15 75855228 75855359 + Gm23747 snoRNA snoRNA MGP_CASTEiJ_T0041100.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76296004 76324688 - MGP_CASTEiJ_P0041100 Plec protein_coding protein_coding MGP_CASTEiJ_T0041101.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76296009 76357059 - MGP_CASTEiJ_P0041101 Plec protein_coding protein_coding MGP_CASTEiJ_T0041102.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76296009 76331344 - MGP_CASTEiJ_P0041102 Plec protein_coding protein_coding MGP_CASTEiJ_T0041103.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76296009 76334188 - MGP_CASTEiJ_P0041103 Plec protein_coding protein_coding MGP_CASTEiJ_T0041104.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76296009 76324862 - MGP_CASTEiJ_P0041104 Plec protein_coding protein_coding MGP_CASTEiJ_T0041105.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76296010 76355179 - MGP_CASTEiJ_P0041105 Plec protein_coding protein_coding MGP_CASTEiJ_T0041106.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76296011 76323237 - MGP_CASTEiJ_P0041106 Plec protein_coding protein_coding MGP_CASTEiJ_T0041107.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76296011 76320734 - MGP_CASTEiJ_P0041107 Plec protein_coding protein_coding MGP_CASTEiJ_T0041108.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76296011 76325634 - MGP_CASTEiJ_P0041108 Plec protein_coding protein_coding MGP_CASTEiJ_T0041109.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76296011 76324862 - MGP_CASTEiJ_P0041109 Plec protein_coding protein_coding MGP_CASTEiJ_T0041110.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76296011 76331345 - MGP_CASTEiJ_P0041110 Plec protein_coding protein_coding MGP_CASTEiJ_T0041111.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76300416 76313054 - MGP_CASTEiJ_P0041111 Plec protein_coding protein_coding MGP_CASTEiJ_T0041112.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76311620 76331344 - MGP_CASTEiJ_P0041112 Plec protein_coding protein_coding MGP_CASTEiJ_T0041113.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76313474 76324862 - MGP_CASTEiJ_P0041113 Plec protein_coding protein_coding MGP_CASTEiJ_T0041114.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76313474 76357726 - MGP_CASTEiJ_P0041114 Plec protein_coding protein_coding MGP_CASTEiJ_T0041115.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76313474 76333276 - MGP_CASTEiJ_P0041115 Plec protein_coding protein_coding MGP_CASTEiJ_T0041116.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76313551 76358251 - MGP_CASTEiJ_P0041116 Plec protein_coding protein_coding MGP_CASTEiJ_T0041117.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76319410 76325634 - MGP_CASTEiJ_P0041117 Plec protein_coding protein_coding MGP_CASTEiJ_T0041118.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76319410 76334188 - MGP_CASTEiJ_P0041118 Plec protein_coding protein_coding MGP_CASTEiJ_T0041119.1 MGP_CASTEiJ_G0021235.1 mouse_genomes_project 15 76356415 76358255 - Plec protein_coding retained_intron MGP_CASTEiJ_T0011069.1 MGP_CASTEiJ_G0009257.1 mouse_genomes_project 15 105041561 105041630 + Gm27337 misc_RNA misc_RNA MGP_CASTEiJ_T0099431.1 MGP_CASTEiJ_G0036344.1 mouse_genomes_project 15 36046785 36046905 - Gm24833 snRNA snRNA MGP_CASTEiJ_T0006575.1 MGP_CASTEiJ_G0005445.1 mouse_genomes_project 15 35422771 35462200 + Gm26766 lincRNA lincRNA MGP_CASTEiJ_T0042493.1 MGP_CASTEiJ_G0021641.1 mouse_genomes_project 15 103592850 103597197 - MGP_CASTEiJ_P0042493 Gm5414 protein_coding protein_coding MGP_CASTEiJ_T0009826.1 MGP_CASTEiJ_G0008014.1 mouse_genomes_project 15 103525568 103525706 + Gm44393 miRNA miRNA MGP_CASTEiJ_T0040631.1 MGP_CASTEiJ_G0021077.1 mouse_genomes_project 15 38580573 38588391 + MGP_CASTEiJ_P0040631 9330182O14Rik protein_coding protein_coding MGP_CASTEiJ_T0003516.1 MGP_CASTEiJ_G0003192.1 mouse_genomes_project 15 101159557 101167146 + Nckap5los antisense antisense MGP_CASTEiJ_T0042388.1 MGP_CASTEiJ_G0021605.1 mouse_genomes_project 15 102096796 102114477 + MGP_CASTEiJ_P0042388 Tmprss12 protein_coding protein_coding MGP_CASTEiJ_T0042371.1 MGP_CASTEiJ_G0021601.1 mouse_genomes_project 15 101687534 101701893 - MGP_CASTEiJ_P0042371 protein_coding protein_coding MGP_CASTEiJ_T0042372.1 MGP_CASTEiJ_G0021601.1 mouse_genomes_project 15 101687539 101736904 - MGP_CASTEiJ_P0042372 protein_coding protein_coding MGP_CASTEiJ_T0042462.1 MGP_CASTEiJ_G0021626.1 mouse_genomes_project 15 103044127 103064108 + MGP_CASTEiJ_P0042462 Acvrl1 protein_coding protein_coding MGP_CASTEiJ_T0042463.1 MGP_CASTEiJ_G0021626.1 mouse_genomes_project 15 103044142 103051909 + MGP_CASTEiJ_P0042463 Acvrl1 protein_coding protein_coding MGP_CASTEiJ_T0042464.1 MGP_CASTEiJ_G0021626.1 mouse_genomes_project 15 103044156 103062407 + MGP_CASTEiJ_P0042464 Acvrl1 protein_coding protein_coding MGP_CASTEiJ_T0042465.1 MGP_CASTEiJ_G0021626.1 mouse_genomes_project 15 103044156 103052532 + MGP_CASTEiJ_P0042465 Acvrl1 protein_coding protein_coding MGP_CASTEiJ_T0042466.1 MGP_CASTEiJ_G0021626.1 mouse_genomes_project 15 103044179 103062406 + MGP_CASTEiJ_P0042466 Acvrl1 protein_coding protein_coding MGP_CASTEiJ_T0042467.1 MGP_CASTEiJ_G0021626.1 mouse_genomes_project 15 103044527 103062408 + MGP_CASTEiJ_P0042467 Acvrl1 protein_coding protein_coding MGP_CASTEiJ_T0042468.1 MGP_CASTEiJ_G0021626.1 mouse_genomes_project 15 103044529 103062406 + MGP_CASTEiJ_P0042468 Acvrl1 protein_coding protein_coding MGP_CASTEiJ_T0042469.1 MGP_CASTEiJ_G0021626.1 mouse_genomes_project 15 103050629 103052683 + MGP_CASTEiJ_P0042469 Acvrl1 protein_coding protein_coding MGP_CASTEiJ_T0042470.1 MGP_CASTEiJ_G0021626.1 mouse_genomes_project 15 103051347 103064108 + MGP_CASTEiJ_P0042470 Acvrl1 protein_coding protein_coding MGP_CASTEiJ_T0042471.1 MGP_CASTEiJ_G0021626.1 mouse_genomes_project 15 103052877 103054257 + Acvrl1 protein_coding retained_intron MGP_CASTEiJ_T0042472.1 MGP_CASTEiJ_G0021626.1 mouse_genomes_project 15 103054824 103061392 + Acvrl1 protein_coding processed_transcript MGP_CASTEiJ_T0000907.1 MGP_CASTEiJ_G0000846.1 mouse_genomes_project 15 98214474 98214939 + TEC TEC MGP_CASTEiJ_T0040657.1 MGP_CASTEiJ_G0021091.1 mouse_genomes_project 15 43308439 43427969 - MGP_CASTEiJ_P0040657 Sybu protein_coding protein_coding MGP_CASTEiJ_T0040658.1 MGP_CASTEiJ_G0021091.1 mouse_genomes_project 15 43308439 43427969 - MGP_CASTEiJ_P0040658 Sybu protein_coding protein_coding MGP_CASTEiJ_T0040659.1 MGP_CASTEiJ_G0021091.1 mouse_genomes_project 15 43308439 43392846 - MGP_CASTEiJ_P0040659 Sybu protein_coding protein_coding MGP_CASTEiJ_T0040660.1 MGP_CASTEiJ_G0021091.1 mouse_genomes_project 15 43308684 43388853 - MGP_CASTEiJ_P0040660 Sybu protein_coding unknown_likely_coding MGP_CASTEiJ_T0012688.1 MGP_CASTEiJ_G0010851.1 mouse_genomes_project 15 23679383 23679711 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0041712.1 MGP_CASTEiJ_G0021394.1 mouse_genomes_project 15 82816108 82818408 - MGP_CASTEiJ_P0041712 Tnfrsf13c protein_coding protein_coding MGP_CASTEiJ_T0041813.1 MGP_CASTEiJ_G0021429.1 mouse_genomes_project 15 84831368 84860563 - MGP_CASTEiJ_P0041813 Sult4a1 protein_coding protein_coding MGP_CASTEiJ_T0040347.1 MGP_CASTEiJ_G0020983.1 mouse_genomes_project 15 7612330 7644629 - MGP_CASTEiJ_P0040347 Ttc23l protein_coding protein_coding MGP_CASTEiJ_T0040348.1 MGP_CASTEiJ_G0020983.1 mouse_genomes_project 15 7616193 7677436 - MGP_CASTEiJ_P0040348 Ttc23l protein_coding protein_coding MGP_CASTEiJ_T0040349.1 MGP_CASTEiJ_G0020983.1 mouse_genomes_project 15 7655103 7677418 - MGP_CASTEiJ_P0040349 Ttc23l protein_coding protein_coding MGP_CASTEiJ_T0041962.1 MGP_CASTEiJ_G0021478.1 mouse_genomes_project 15 90219096 90246008 - MGP_CASTEiJ_P0041962 Plxnb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0041963.1 MGP_CASTEiJ_G0021478.1 mouse_genomes_project 15 90219100 90220131 - Plxnb2 protein_coding processed_transcript MGP_CASTEiJ_T0041964.1 MGP_CASTEiJ_G0021478.1 mouse_genomes_project 15 90219532 90220796 - Plxnb2 protein_coding processed_transcript MGP_CASTEiJ_T0041965.1 MGP_CASTEiJ_G0021478.1 mouse_genomes_project 15 90225902 90226439 - Plxnb2 protein_coding processed_transcript MGP_CASTEiJ_T0041966.1 MGP_CASTEiJ_G0021478.1 mouse_genomes_project 15 90229782 90230689 - Plxnb2 protein_coding processed_transcript MGP_CASTEiJ_T0042318.1 MGP_CASTEiJ_G0021585.1 mouse_genomes_project 15 101037192 101090503 - MGP_CASTEiJ_P0042318 Fmnl3 protein_coding protein_coding MGP_CASTEiJ_T0042319.1 MGP_CASTEiJ_G0021585.1 mouse_genomes_project 15 101037192 101090470 - MGP_CASTEiJ_P0042319 Fmnl3 protein_coding protein_coding MGP_CASTEiJ_T0042320.1 MGP_CASTEiJ_G0021585.1 mouse_genomes_project 15 101037192 101090470 - MGP_CASTEiJ_P0042320 Fmnl3 protein_coding protein_coding MGP_CASTEiJ_T0042321.1 MGP_CASTEiJ_G0021585.1 mouse_genomes_project 15 101044349 101045617 - Fmnl3 protein_coding retained_intron MGP_CASTEiJ_T0042322.1 MGP_CASTEiJ_G0021585.1 mouse_genomes_project 15 101047765 101055655 - Fmnl3 protein_coding processed_transcript MGP_CASTEiJ_T0042106.1 MGP_CASTEiJ_G0021513.1 mouse_genomes_project 15 94703649 94799041 + MGP_CASTEiJ_P0042106 Pphln1 protein_coding protein_coding MGP_CASTEiJ_T0042107.1 MGP_CASTEiJ_G0021513.1 mouse_genomes_project 15 94703649 94799041 + MGP_CASTEiJ_P0042107 Pphln1 protein_coding protein_coding MGP_CASTEiJ_T0042108.1 MGP_CASTEiJ_G0021513.1 mouse_genomes_project 15 94703649 94799041 + MGP_CASTEiJ_P0042108 Pphln1 protein_coding protein_coding MGP_CASTEiJ_T0042109.1 MGP_CASTEiJ_G0021513.1 mouse_genomes_project 15 94703769 94798621 + MGP_CASTEiJ_P0042109 Pphln1 protein_coding protein_coding MGP_CASTEiJ_T0042502.1 MGP_CASTEiJ_G0021649.1 mouse_genomes_project 15 103853982 103865006 - MGP_CASTEiJ_P0042502 Krt77 protein_coding protein_coding MGP_CASTEiJ_T0041182.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76511716 76576830 + Mroh1 protein_coding processed_transcript MGP_CASTEiJ_T0041183.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76511968 76543767 + Mroh1 protein_coding processed_transcript MGP_CASTEiJ_T0041184.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76511968 76591705 + MGP_CASTEiJ_P0041184 Mroh1 protein_coding protein_coding MGP_CASTEiJ_T0041185.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76511978 76591702 + Mroh1 protein_coding retained_intron MGP_CASTEiJ_T0041186.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76511987 76536356 + MGP_CASTEiJ_P0041186 Mroh1 protein_coding protein_coding MGP_CASTEiJ_T0041187.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76512008 76543766 + MGP_CASTEiJ_P0041187 Mroh1 protein_coding protein_coding MGP_CASTEiJ_T0041188.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76522595 76576830 + MGP_CASTEiJ_P0041188 Mroh1 protein_coding protein_coding MGP_CASTEiJ_T0041189.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76526505 76591645 + MGP_CASTEiJ_P0041189 Mroh1 protein_coding protein_coding MGP_CASTEiJ_T0041190.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76564993 76591705 + Mroh1 protein_coding retained_intron MGP_CASTEiJ_T0041191.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76565750 76570996 + MGP_CASTEiJ_P0041191 Mroh1 protein_coding protein_coding MGP_CASTEiJ_T0041192.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76579709 76585500 + Mroh1 protein_coding retained_intron MGP_CASTEiJ_T0041193.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76588320 76589875 + Mroh1 protein_coding retained_intron MGP_CASTEiJ_T0041194.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76589282 76590037 + Mroh1 protein_coding retained_intron MGP_CASTEiJ_T0041195.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76590465 76591036 + Mroh1 protein_coding retained_intron MGP_CASTEiJ_T0041196.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76590513 76591705 + MGP_CASTEiJ_P0041196 Mroh1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041197.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76590790 76591705 + MGP_CASTEiJ_P0041197 Mroh1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041198.1 MGP_CASTEiJ_G0021249.1 mouse_genomes_project 15 76590805 76591704 + Mroh1 protein_coding retained_intron MGP_CASTEiJ_T0003489.1 MGP_CASTEiJ_G0003172.1 mouse_genomes_project 15 66288888 66294134 - Gm17140 antisense antisense MGP_CASTEiJ_T0040681.1 MGP_CASTEiJ_G0021096.1 mouse_genomes_project 15 50859043 50865262 + MGP_CASTEiJ_P0040681 Utp23 protein_coding protein_coding MGP_CASTEiJ_T0040682.1 MGP_CASTEiJ_G0021096.1 mouse_genomes_project 15 50859097 50865258 + MGP_CASTEiJ_P0040682 Utp23 protein_coding protein_coding MGP_CASTEiJ_T0003497.1 MGP_CASTEiJ_G0003179.1 mouse_genomes_project 15 79504690 79556388 + Gm10863 antisense antisense MGP_CASTEiJ_T0003498.1 MGP_CASTEiJ_G0003179.1 mouse_genomes_project 15 79504707 79556173 + Gm10863 antisense antisense MGP_CASTEiJ_T0003499.1 MGP_CASTEiJ_G0003179.1 mouse_genomes_project 15 79504715 79556502 + Gm10863 antisense antisense MGP_CASTEiJ_T0003500.1 MGP_CASTEiJ_G0003179.1 mouse_genomes_project 15 79504715 79567891 + Gm10863 antisense antisense MGP_CASTEiJ_T0003501.1 MGP_CASTEiJ_G0003179.1 mouse_genomes_project 15 79549355 79557845 + Gm10863 antisense antisense MGP_CASTEiJ_T0041858.1 MGP_CASTEiJ_G0021450.1 mouse_genomes_project 15 86400146 86446495 - MGP_CASTEiJ_P0041858 Wnt7b protein_coding protein_coding MGP_CASTEiJ_T0041859.1 MGP_CASTEiJ_G0021450.1 mouse_genomes_project 15 86402018 86442355 - MGP_CASTEiJ_P0041859 Wnt7b protein_coding protein_coding MGP_CASTEiJ_T0041144.1 MGP_CASTEiJ_G0021242.1 mouse_genomes_project 15 76459431 76463108 + MGP_CASTEiJ_P0041144 Gpaa1 protein_coding protein_coding MGP_CASTEiJ_T0041145.1 MGP_CASTEiJ_G0021242.1 mouse_genomes_project 15 76459544 76463099 + MGP_CASTEiJ_P0041145 Gpaa1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041146.1 MGP_CASTEiJ_G0021242.1 mouse_genomes_project 15 76459545 76463104 + MGP_CASTEiJ_P0041146 Gpaa1 protein_coding protein_coding MGP_CASTEiJ_T0041147.1 MGP_CASTEiJ_G0021242.1 mouse_genomes_project 15 76459550 76461015 + Gpaa1 protein_coding retained_intron MGP_CASTEiJ_T0041148.1 MGP_CASTEiJ_G0021242.1 mouse_genomes_project 15 76459713 76460687 + MGP_CASTEiJ_P0041148 Gpaa1 protein_coding protein_coding MGP_CASTEiJ_T0041149.1 MGP_CASTEiJ_G0021242.1 mouse_genomes_project 15 76460199 76461122 + MGP_CASTEiJ_P0041149 Gpaa1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0041150.1 MGP_CASTEiJ_G0021242.1 mouse_genomes_project 15 76460423 76461818 + Gpaa1 protein_coding retained_intron MGP_CASTEiJ_T0041151.1 MGP_CASTEiJ_G0021242.1 mouse_genomes_project 15 76460727 76461448 + MGP_CASTEiJ_P0041151 Gpaa1 protein_coding protein_coding MGP_CASTEiJ_T0041152.1 MGP_CASTEiJ_G0021242.1 mouse_genomes_project 15 76461369 76462494 + Gpaa1 protein_coding retained_intron MGP_CASTEiJ_T0041153.1 MGP_CASTEiJ_G0021242.1 mouse_genomes_project 15 76461931 76462499 + Gpaa1 protein_coding retained_intron MGP_CASTEiJ_T0041844.1 MGP_CASTEiJ_G0021441.1 mouse_genomes_project 15 85737593 85757171 + MGP_CASTEiJ_P0041844 Nup50 protein_coding protein_coding MGP_CASTEiJ_T0009796.1 MGP_CASTEiJ_G0007984.1 mouse_genomes_project 15 79736695 79736768 - Mir1943 miRNA miRNA MGP_CASTEiJ_T0042203.1 MGP_CASTEiJ_G0021541.1 mouse_genomes_project 15 99626279 99683626 - MGP_CASTEiJ_P0042203 Senp1 protein_coding protein_coding MGP_CASTEiJ_T0042204.1 MGP_CASTEiJ_G0021541.1 mouse_genomes_project 15 99628761 99654050 - Senp1 protein_coding retained_intron MGP_CASTEiJ_T0042205.1 MGP_CASTEiJ_G0021541.1 mouse_genomes_project 15 99628922 99684496 - MGP_CASTEiJ_P0042205 Senp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042206.1 MGP_CASTEiJ_G0021541.1 mouse_genomes_project 15 99629262 99684178 - MGP_CASTEiJ_P0042206 Senp1 protein_coding protein_coding MGP_CASTEiJ_T0042207.1 MGP_CASTEiJ_G0021541.1 mouse_genomes_project 15 99630417 99636480 - Senp1 protein_coding processed_transcript MGP_CASTEiJ_T0042208.1 MGP_CASTEiJ_G0021541.1 mouse_genomes_project 15 99652930 99684297 - Senp1 protein_coding retained_intron MGP_CASTEiJ_T0042209.1 MGP_CASTEiJ_G0021541.1 mouse_genomes_project 15 99675970 99678467 - MGP_CASTEiJ_P0042209 Senp1 protein_coding protein_coding MGP_CASTEiJ_T0042210.1 MGP_CASTEiJ_G0021541.1 mouse_genomes_project 15 99679501 99684232 - Senp1 protein_coding processed_transcript MGP_CASTEiJ_T0042211.1 MGP_CASTEiJ_G0021541.1 mouse_genomes_project 15 99680135 99683814 - Senp1 protein_coding processed_transcript MGP_CASTEiJ_T0040455.1 MGP_CASTEiJ_G0021016.1 mouse_genomes_project 15 25764995 25791325 - MGP_CASTEiJ_P0040455 Fam105a protein_coding unknown_likely_coding MGP_CASTEiJ_T0040456.1 MGP_CASTEiJ_G0021016.1 mouse_genomes_project 15 25765003 25791314 - MGP_CASTEiJ_P0040456 Fam105a protein_coding protein_coding MGP_CASTEiJ_T0098840.1 MGP_CASTEiJ_G0035767.1 mouse_genomes_project 15 36211622 36214080 - Gm15940 sense_intronic sense_intronic MGP_CASTEiJ_T0012681.1 MGP_CASTEiJ_G0010844.1 mouse_genomes_project 15 4295822 4296425 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101548.1 MGP_CASTEiJ_G0038431.1 mouse_genomes_project 16 76558962 76587215 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101549.1 MGP_CASTEiJ_G0038431.1 mouse_genomes_project 16 76560750 76561117 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0006672.1 MGP_CASTEiJ_G0005518.1 mouse_genomes_project 16 36739218 36740729 + D930030I03Rik lincRNA lincRNA MGP_CASTEiJ_T0043604.1 MGP_CASTEiJ_G0021917.1 mouse_genomes_project 16 18005742 18015002 + MGP_CASTEiJ_P0043604 Chrd protein_coding protein_coding MGP_CASTEiJ_T0043605.1 MGP_CASTEiJ_G0021917.1 mouse_genomes_project 16 18005742 18010768 + MGP_CASTEiJ_P0043605 Chrd protein_coding protein_coding MGP_CASTEiJ_T0043606.1 MGP_CASTEiJ_G0021917.1 mouse_genomes_project 16 18005742 18015002 + MGP_CASTEiJ_P0043606 Chrd protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043607.1 MGP_CASTEiJ_G0021917.1 mouse_genomes_project 16 18008820 18015000 + Chrd protein_coding retained_intron MGP_CASTEiJ_T0012818.1 MGP_CASTEiJ_G0010981.1 mouse_genomes_project 16 78795570 78795929 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0042877.1 MGP_CASTEiJ_G0021757.1 mouse_genomes_project 16 5347660 5361197 - MGP_CASTEiJ_P0042877 Carhsp1 protein_coding protein_coding MGP_CASTEiJ_T0098846.1 MGP_CASTEiJ_G0035772.1 mouse_genomes_project 16 11326335 11327547 - Gm15869 sense_intronic sense_intronic MGP_CASTEiJ_T0043249.1 MGP_CASTEiJ_G0021842.1 mouse_genomes_project 16 14554238 14557404 - MGP_CASTEiJ_P0043249 Thap7 protein_coding protein_coding MGP_CASTEiJ_T0043250.1 MGP_CASTEiJ_G0021842.1 mouse_genomes_project 16 14554442 14557380 - Thap7 protein_coding retained_intron MGP_CASTEiJ_T0043251.1 MGP_CASTEiJ_G0021842.1 mouse_genomes_project 16 14554506 14557320 - Thap7 protein_coding retained_intron MGP_CASTEiJ_T0043252.1 MGP_CASTEiJ_G0021842.1 mouse_genomes_project 16 14554600 14556949 - Thap7 protein_coding retained_intron MGP_CASTEiJ_T0043253.1 MGP_CASTEiJ_G0021842.1 mouse_genomes_project 16 14554757 14555406 - Thap7 protein_coding retained_intron MGP_CASTEiJ_T0043254.1 MGP_CASTEiJ_G0021842.1 mouse_genomes_project 16 14554838 14557323 - MGP_CASTEiJ_P0043254 Thap7 protein_coding protein_coding MGP_CASTEiJ_T0043255.1 MGP_CASTEiJ_G0021842.1 mouse_genomes_project 16 14555260 14556924 - Thap7 protein_coding retained_intron MGP_CASTEiJ_T0043743.1 MGP_CASTEiJ_G0021957.1 mouse_genomes_project 16 24635531 24650899 - MGP_CASTEiJ_P0043743 Gmnc protein_coding unknown_likely_coding MGP_CASTEiJ_T0043744.1 MGP_CASTEiJ_G0021957.1 mouse_genomes_project 16 24635542 24676047 - MGP_CASTEiJ_P0043744 Gmnc protein_coding protein_coding MGP_CASTEiJ_T0012762.1 MGP_CASTEiJ_G0010925.1 mouse_genomes_project 16 16058502 16058791 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100741.1 MGP_CASTEiJ_G0037654.1 mouse_genomes_project 16 75872711 75872841 - Gm22268 snoRNA snoRNA MGP_CASTEiJ_T0009891.1 MGP_CASTEiJ_G0008079.1 mouse_genomes_project 16 92019639 92019741 - Mir6367 miRNA miRNA MGP_CASTEiJ_T0012796.1 MGP_CASTEiJ_G0010959.1 mouse_genomes_project 16 38275045 38276043 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009874.1 MGP_CASTEiJ_G0008062.1 mouse_genomes_project 16 43098295 43098379 - Mir3081 miRNA miRNA MGP_CASTEiJ_T0100729.1 MGP_CASTEiJ_G0037642.1 mouse_genomes_project 16 52290130 52290219 - Gm22303 snoRNA snoRNA MGP_CASTEiJ_T0043456.1 MGP_CASTEiJ_G0021885.1 mouse_genomes_project 16 16659160 16660200 - MGP_CASTEiJ_P0043456 protein_coding protein_coding MGP_CASTEiJ_T0043458.1 MGP_CASTEiJ_G0021885.1 mouse_genomes_project 16 16659756 16672188 - MGP_CASTEiJ_P0043458 protein_coding protein_coding MGP_CASTEiJ_T0000929.1 MGP_CASTEiJ_G0000866.1 mouse_genomes_project 16 77260513 77263980 + TEC TEC MGP_CASTEiJ_T0100711.1 MGP_CASTEiJ_G0037624.1 mouse_genomes_project 16 20614913 20615042 + Gm26447 snoRNA snoRNA MGP_CASTEiJ_T0043915.1 MGP_CASTEiJ_G0022003.1 mouse_genomes_project 16 30602031 30628500 + Tnk2 protein_coding processed_transcript MGP_CASTEiJ_T0043916.1 MGP_CASTEiJ_G0022003.1 mouse_genomes_project 16 30602448 30624891 + Tnk2 protein_coding processed_transcript MGP_CASTEiJ_T0043917.1 MGP_CASTEiJ_G0022003.1 mouse_genomes_project 16 30602800 30643576 + MGP_CASTEiJ_P0043917 Tnk2 protein_coding protein_coding MGP_CASTEiJ_T0043918.1 MGP_CASTEiJ_G0022003.1 mouse_genomes_project 16 30602800 30643576 + MGP_CASTEiJ_P0043918 Tnk2 protein_coding protein_coding MGP_CASTEiJ_T0043919.1 MGP_CASTEiJ_G0022003.1 mouse_genomes_project 16 30602830 30643576 + MGP_CASTEiJ_P0043919 Tnk2 protein_coding protein_coding MGP_CASTEiJ_T0043920.1 MGP_CASTEiJ_G0022003.1 mouse_genomes_project 16 30602983 30643575 + MGP_CASTEiJ_P0043920 Tnk2 protein_coding protein_coding MGP_CASTEiJ_T0043921.1 MGP_CASTEiJ_G0022003.1 mouse_genomes_project 16 30603116 30628513 + Tnk2 protein_coding processed_transcript MGP_CASTEiJ_T0043922.1 MGP_CASTEiJ_G0022003.1 mouse_genomes_project 16 30617924 30628492 + Tnk2 protein_coding processed_transcript MGP_CASTEiJ_T0043923.1 MGP_CASTEiJ_G0022003.1 mouse_genomes_project 16 30619922 30628484 + Tnk2 protein_coding processed_transcript MGP_CASTEiJ_T0043924.1 MGP_CASTEiJ_G0022003.1 mouse_genomes_project 16 30628460 30631895 + Tnk2 protein_coding processed_transcript MGP_CASTEiJ_T0043925.1 MGP_CASTEiJ_G0022003.1 mouse_genomes_project 16 30633398 30639550 + MGP_CASTEiJ_P0043925 Tnk2 protein_coding protein_coding MGP_CASTEiJ_T0043926.1 MGP_CASTEiJ_G0022003.1 mouse_genomes_project 16 30633400 30643576 + MGP_CASTEiJ_P0043926 Tnk2 protein_coding protein_coding MGP_CASTEiJ_T0043927.1 MGP_CASTEiJ_G0022003.1 mouse_genomes_project 16 30633422 30639764 + MGP_CASTEiJ_P0043927 Tnk2 protein_coding protein_coding MGP_CASTEiJ_T0043928.1 MGP_CASTEiJ_G0022003.1 mouse_genomes_project 16 30633436 30640217 + MGP_CASTEiJ_P0043928 Tnk2 protein_coding protein_coding MGP_CASTEiJ_T0043929.1 MGP_CASTEiJ_G0022003.1 mouse_genomes_project 16 30633439 30639163 + Tnk2 protein_coding retained_intron MGP_CASTEiJ_T0043930.1 MGP_CASTEiJ_G0022003.1 mouse_genomes_project 16 30633443 30639966 + MGP_CASTEiJ_P0043930 Tnk2 protein_coding protein_coding MGP_CASTEiJ_T0099505.1 MGP_CASTEiJ_G0036418.1 mouse_genomes_project 16 54575403 54575511 - Gm23003 snRNA snRNA MGP_CASTEiJ_T0100733.1 MGP_CASTEiJ_G0037646.1 mouse_genomes_project 16 56909942 56910076 - Gm24039 snoRNA snoRNA MGP_CASTEiJ_T0043661.1 MGP_CASTEiJ_G0021934.1 mouse_genomes_project 16 20353841 20361717 + MGP_CASTEiJ_P0043661 Ahsg protein_coding protein_coding MGP_CASTEiJ_T0043333.1 MGP_CASTEiJ_G0021859.1 mouse_genomes_project 16 15045587 15046886 + MGP_CASTEiJ_P0043333 Vpreb2 protein_coding protein_coding MGP_CASTEiJ_T0012748.1 MGP_CASTEiJ_G0010911.1 mouse_genomes_project 16 9653727 9655062 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0043337.1 MGP_CASTEiJ_G0021861.1 mouse_genomes_project 16 15119990 15151779 - MGP_CASTEiJ_P0043337 Prodh protein_coding protein_coding MGP_CASTEiJ_T0043343.1 MGP_CASTEiJ_G0021861.1 mouse_genomes_project 16 15131081 15151773 - MGP_CASTEiJ_P0043343 Prodh protein_coding protein_coding MGP_CASTEiJ_T0043344.1 MGP_CASTEiJ_G0021861.1 mouse_genomes_project 16 15131485 15140113 - MGP_CASTEiJ_P0043344 Prodh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043345.1 MGP_CASTEiJ_G0021861.1 mouse_genomes_project 16 15131615 15140787 - MGP_CASTEiJ_P0043345 Prodh protein_coding protein_coding MGP_CASTEiJ_T0043346.1 MGP_CASTEiJ_G0021861.1 mouse_genomes_project 16 15141856 15143164 - Prodh protein_coding processed_transcript MGP_CASTEiJ_T0043347.1 MGP_CASTEiJ_G0021861.1 mouse_genomes_project 16 15145048 15151638 - MGP_CASTEiJ_P0043347 Prodh protein_coding protein_coding MGP_CASTEiJ_T0003542.1 MGP_CASTEiJ_G0003215.1 mouse_genomes_project 16 19941356 19950823 + 9230117E06Rik antisense antisense MGP_CASTEiJ_T0009839.1 MGP_CASTEiJ_G0008027.1 mouse_genomes_project 16 7066618 7066690 + Gm22932 miRNA miRNA MGP_CASTEiJ_T0100736.1 MGP_CASTEiJ_G0037649.1 mouse_genomes_project 16 64392714 64392844 - Gm22429 snoRNA snoRNA MGP_CASTEiJ_T0100734.1 MGP_CASTEiJ_G0037647.1 mouse_genomes_project 16 57756736 57756863 - Gm26019 snoRNA snoRNA MGP_CASTEiJ_T0043691.1 MGP_CASTEiJ_G0021939.1 mouse_genomes_project 16 20617553 20632932 - MGP_CASTEiJ_P0043691 Rfc4 protein_coding protein_coding MGP_CASTEiJ_T0043692.1 MGP_CASTEiJ_G0021939.1 mouse_genomes_project 16 20617561 20632912 - MGP_CASTEiJ_P0043692 Rfc4 protein_coding protein_coding MGP_CASTEiJ_T0043693.1 MGP_CASTEiJ_G0021939.1 mouse_genomes_project 16 20617605 20618351 - Rfc4 protein_coding retained_intron MGP_CASTEiJ_T0043694.1 MGP_CASTEiJ_G0021939.1 mouse_genomes_project 16 20618313 20632886 - MGP_CASTEiJ_P0043694 Rfc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043695.1 MGP_CASTEiJ_G0021939.1 mouse_genomes_project 16 20626224 20632923 - MGP_CASTEiJ_P0043695 Rfc4 protein_coding protein_coding MGP_CASTEiJ_T0100722.1 MGP_CASTEiJ_G0037635.1 mouse_genomes_project 16 36483685 36483814 - Gm27931 snoRNA snoRNA MGP_CASTEiJ_T0100718.1 MGP_CASTEiJ_G0037631.1 mouse_genomes_project 16 33538680 33538883 + Gm25079 snoRNA snoRNA MGP_CASTEiJ_T0006687.1 MGP_CASTEiJ_G0005528.1 mouse_genomes_project 16 56295104 56295708 + Gm26800 lincRNA lincRNA MGP_CASTEiJ_T0006669.1 MGP_CASTEiJ_G0005515.1 mouse_genomes_project 16 31404827 31405700 - 1700007L15Rik lincRNA lincRNA MGP_CASTEiJ_T0043626.1 MGP_CASTEiJ_G0021921.1 mouse_genomes_project 16 19022266 19069986 - MGP_CASTEiJ_P0043626 2510009E07Rik protein_coding protein_coding MGP_CASTEiJ_T0044909.1 MGP_CASTEiJ_G0022289.1 mouse_genomes_project 16 91865647 91893234 + MGP_CASTEiJ_P0044909 Gm21970 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044910.1 MGP_CASTEiJ_G0022289.1 mouse_genomes_project 16 91865647 91893234 + MGP_CASTEiJ_P0044910 Gm21970 protein_coding protein_coding MGP_CASTEiJ_T0006671.1 MGP_CASTEiJ_G0005517.1 mouse_genomes_project 16 33982078 33985073 - Gm26838 lincRNA lincRNA MGP_CASTEiJ_T0098528.1 MGP_CASTEiJ_G0035459.1 mouse_genomes_project 16 27935274 27935377 - n-R5s32 rRNA rRNA MGP_CASTEiJ_T0003537.1 MGP_CASTEiJ_G0003210.1 mouse_genomes_project 16 11322119 11324290 + Gm15868 antisense antisense MGP_CASTEiJ_T0011076.1 MGP_CASTEiJ_G0009264.1 mouse_genomes_project 16 20033869 20034061 + Gm22481 misc_RNA misc_RNA MGP_CASTEiJ_T0045162.1 MGP_CASTEiJ_G0022333.1 mouse_genomes_project 16 97128614 97165736 + MGP_CASTEiJ_P0045162 Sh3bgr protein_coding protein_coding MGP_CASTEiJ_T0045163.1 MGP_CASTEiJ_G0022333.1 mouse_genomes_project 16 97128815 97165731 + MGP_CASTEiJ_P0045163 Sh3bgr protein_coding protein_coding MGP_CASTEiJ_T0045164.1 MGP_CASTEiJ_G0022333.1 mouse_genomes_project 16 97128815 97161921 + MGP_CASTEiJ_P0045164 Sh3bgr protein_coding protein_coding MGP_CASTEiJ_T0045165.1 MGP_CASTEiJ_G0022333.1 mouse_genomes_project 16 97128848 97157434 + MGP_CASTEiJ_P0045165 Sh3bgr protein_coding protein_coding MGP_CASTEiJ_T0045166.1 MGP_CASTEiJ_G0022333.1 mouse_genomes_project 16 97128873 97161952 + MGP_CASTEiJ_P0045166 Sh3bgr protein_coding protein_coding MGP_CASTEiJ_T0045167.1 MGP_CASTEiJ_G0022333.1 mouse_genomes_project 16 97133314 97157434 + MGP_CASTEiJ_P0045167 Sh3bgr protein_coding protein_coding MGP_CASTEiJ_T0045169.1 MGP_CASTEiJ_G0022333.1 mouse_genomes_project 16 97141064 97161924 + MGP_CASTEiJ_P0045169 Sh3bgr protein_coding protein_coding MGP_CASTEiJ_T0045170.1 MGP_CASTEiJ_G0022333.1 mouse_genomes_project 16 97157341 97165728 + MGP_CASTEiJ_P0045170 Sh3bgr protein_coding protein_coding MGP_CASTEiJ_T0099490.1 MGP_CASTEiJ_G0036403.1 mouse_genomes_project 16 33380131 33380259 - Gm25179 snRNA snRNA MGP_CASTEiJ_T0045014.1 MGP_CASTEiJ_G0022308.1 mouse_genomes_project 16 93041682 93088164 + MGP_CASTEiJ_P0045014 Clic6 protein_coding protein_coding MGP_CASTEiJ_T0045015.1 MGP_CASTEiJ_G0022308.1 mouse_genomes_project 16 93058339 93100661 + MGP_CASTEiJ_P0045015 Clic6 protein_coding protein_coding MGP_CASTEiJ_T0000915.1 MGP_CASTEiJ_G0000853.1 mouse_genomes_project 16 16467862 16469114 + TEC TEC MGP_CASTEiJ_T0043492.1 MGP_CASTEiJ_G0021901.1 mouse_genomes_project 16 17554631 17572434 - protein_coding processed_transcript MGP_CASTEiJ_T0043493.1 MGP_CASTEiJ_G0021901.1 mouse_genomes_project 16 17554631 17572491 - MGP_CASTEiJ_P0043493 protein_coding protein_coding MGP_CASTEiJ_T0043494.1 MGP_CASTEiJ_G0021901.1 mouse_genomes_project 16 17555891 17560434 - protein_coding processed_transcript MGP_CASTEiJ_T0043495.1 MGP_CASTEiJ_G0021901.1 mouse_genomes_project 16 17555996 17563005 - MGP_CASTEiJ_P0043495 protein_coding protein_coding MGP_CASTEiJ_T0043496.1 MGP_CASTEiJ_G0021901.1 mouse_genomes_project 16 17561247 17562280 - protein_coding processed_transcript MGP_CASTEiJ_T0043752.1 MGP_CASTEiJ_G0021961.1 mouse_genomes_project 16 25886123 26173429 - MGP_CASTEiJ_P0043752 Fgf12 protein_coding protein_coding MGP_CASTEiJ_T0012790.1 MGP_CASTEiJ_G0010953.1 mouse_genomes_project 16 35426962 35427809 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044377.1 MGP_CASTEiJ_G0022106.1 mouse_genomes_project 16 43925864 43954814 - MGP_CASTEiJ_P0044377 Cd200 protein_coding protein_coding MGP_CASTEiJ_T0044378.1 MGP_CASTEiJ_G0022106.1 mouse_genomes_project 16 43925912 43954636 - MGP_CASTEiJ_P0044378 Cd200 protein_coding protein_coding MGP_CASTEiJ_T0044379.1 MGP_CASTEiJ_G0022106.1 mouse_genomes_project 16 43927012 43954733 - Cd200 protein_coding processed_transcript MGP_CASTEiJ_T0044380.1 MGP_CASTEiJ_G0022106.1 mouse_genomes_project 16 43936762 43945029 - MGP_CASTEiJ_P0044380 Cd200 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044381.1 MGP_CASTEiJ_G0022106.1 mouse_genomes_project 16 43936762 43954674 - MGP_CASTEiJ_P0044381 Cd200 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044382.1 MGP_CASTEiJ_G0022106.1 mouse_genomes_project 16 43939119 43954784 - Cd200 protein_coding processed_transcript MGP_CASTEiJ_T0044383.1 MGP_CASTEiJ_G0022106.1 mouse_genomes_project 16 43939347 43954802 - Cd200 protein_coding processed_transcript MGP_CASTEiJ_T0044384.1 MGP_CASTEiJ_G0022106.1 mouse_genomes_project 16 43941460 43954778 - Cd200 protein_coding processed_transcript MGP_CASTEiJ_T0044385.1 MGP_CASTEiJ_G0022106.1 mouse_genomes_project 16 43944289 43954625 - Cd200 protein_coding retained_intron MGP_CASTEiJ_T0044386.1 MGP_CASTEiJ_G0022106.1 mouse_genomes_project 16 43945009 43954768 - Cd200 protein_coding processed_transcript MGP_CASTEiJ_T0044387.1 MGP_CASTEiJ_G0022106.1 mouse_genomes_project 16 43952995 43954779 - Cd200 protein_coding processed_transcript MGP_CASTEiJ_T0043291.1 MGP_CASTEiJ_G0021847.1 mouse_genomes_project 16 14683261 14686209 + Ccdc74a protein_coding retained_intron MGP_CASTEiJ_T0043292.1 MGP_CASTEiJ_G0021847.1 mouse_genomes_project 16 14683266 14687600 + MGP_CASTEiJ_P0043292 Ccdc74a protein_coding protein_coding MGP_CASTEiJ_T0043293.1 MGP_CASTEiJ_G0021847.1 mouse_genomes_project 16 14683266 14686035 + MGP_CASTEiJ_P0043293 Ccdc74a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043294.1 MGP_CASTEiJ_G0021847.1 mouse_genomes_project 16 14683342 14685267 + Ccdc74a protein_coding retained_intron MGP_CASTEiJ_T0043295.1 MGP_CASTEiJ_G0021847.1 mouse_genomes_project 16 14683355 14687599 + MGP_CASTEiJ_P0043295 Ccdc74a protein_coding protein_coding MGP_CASTEiJ_T0043296.1 MGP_CASTEiJ_G0021847.1 mouse_genomes_project 16 14683356 14687271 + MGP_CASTEiJ_P0043296 Ccdc74a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043297.1 MGP_CASTEiJ_G0021847.1 mouse_genomes_project 16 14683404 14687600 + MGP_CASTEiJ_P0043297 Ccdc74a protein_coding protein_coding MGP_CASTEiJ_T0043298.1 MGP_CASTEiJ_G0021847.1 mouse_genomes_project 16 14683409 14687309 + MGP_CASTEiJ_P0043298 Ccdc74a protein_coding protein_coding MGP_CASTEiJ_T0043299.1 MGP_CASTEiJ_G0021847.1 mouse_genomes_project 16 14683464 14684655 + Ccdc74a protein_coding retained_intron MGP_CASTEiJ_T0043300.1 MGP_CASTEiJ_G0021847.1 mouse_genomes_project 16 14683491 14687600 + MGP_CASTEiJ_P0043300 Ccdc74a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043322.1 MGP_CASTEiJ_G0021854.1 mouse_genomes_project 16 14952692 14956392 + MGP_CASTEiJ_P0043322 Tssk1 protein_coding protein_coding MGP_CASTEiJ_T0045187.1 MGP_CASTEiJ_G0022340.1 mouse_genomes_project 16 98349977 98434390 + MGP_CASTEiJ_P0045187 Bace2 protein_coding protein_coding MGP_CASTEiJ_T0100740.1 MGP_CASTEiJ_G0037653.1 mouse_genomes_project 16 74306457 74306603 + Gm26307 snoRNA snoRNA MGP_CASTEiJ_T0044365.1 MGP_CASTEiJ_G0022103.1 mouse_genomes_project 16 43661891 43681233 - MGP_CASTEiJ_P0044365 Slc35a5 protein_coding protein_coding MGP_CASTEiJ_T0044366.1 MGP_CASTEiJ_G0022103.1 mouse_genomes_project 16 43664265 43681093 - MGP_CASTEiJ_P0044366 Slc35a5 protein_coding protein_coding MGP_CASTEiJ_T0044367.1 MGP_CASTEiJ_G0022103.1 mouse_genomes_project 16 43666331 43674236 - Slc35a5 protein_coding retained_intron MGP_CASTEiJ_T0044368.1 MGP_CASTEiJ_G0022103.1 mouse_genomes_project 16 43666474 43681171 - MGP_CASTEiJ_P0044368 Slc35a5 protein_coding protein_coding MGP_CASTEiJ_T0044369.1 MGP_CASTEiJ_G0022103.1 mouse_genomes_project 16 43666494 43680710 - MGP_CASTEiJ_P0044369 Slc35a5 protein_coding protein_coding MGP_CASTEiJ_T0044370.1 MGP_CASTEiJ_G0022103.1 mouse_genomes_project 16 43674876 43681182 - Slc35a5 protein_coding retained_intron MGP_CASTEiJ_T0044371.1 MGP_CASTEiJ_G0022103.1 mouse_genomes_project 16 43674919 43680980 - MGP_CASTEiJ_P0044371 Slc35a5 protein_coding protein_coding MGP_CASTEiJ_T0044372.1 MGP_CASTEiJ_G0022103.1 mouse_genomes_project 16 43677002 43681127 - Slc35a5 protein_coding retained_intron MGP_CASTEiJ_T0043656.1 MGP_CASTEiJ_G0021933.1 mouse_genomes_project 16 20316656 20331078 + MGP_CASTEiJ_P0043656 Dnajb11 protein_coding protein_coding MGP_CASTEiJ_T0043657.1 MGP_CASTEiJ_G0021933.1 mouse_genomes_project 16 20316656 20331155 + MGP_CASTEiJ_P0043657 Dnajb11 protein_coding protein_coding MGP_CASTEiJ_T0043658.1 MGP_CASTEiJ_G0021933.1 mouse_genomes_project 16 20316656 20338386 + MGP_CASTEiJ_P0043658 Dnajb11 protein_coding protein_coding MGP_CASTEiJ_T0043659.1 MGP_CASTEiJ_G0021933.1 mouse_genomes_project 16 20316717 20330794 + Dnajb11 protein_coding processed_transcript MGP_CASTEiJ_T0043660.1 MGP_CASTEiJ_G0021933.1 mouse_genomes_project 16 20328179 20330996 + Dnajb11 protein_coding processed_transcript MGP_CASTEiJ_T0044789.1 MGP_CASTEiJ_G0022236.1 mouse_genomes_project 16 88089647 88268587 - MGP_CASTEiJ_P0044789 Grik1 protein_coding protein_coding MGP_CASTEiJ_T0044790.1 MGP_CASTEiJ_G0022236.1 mouse_genomes_project 16 88089647 88295753 - MGP_CASTEiJ_P0044790 Grik1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044791.1 MGP_CASTEiJ_G0022236.1 mouse_genomes_project 16 88089647 88268587 - MGP_CASTEiJ_P0044791 Grik1 protein_coding protein_coding MGP_CASTEiJ_T0044792.1 MGP_CASTEiJ_G0022236.1 mouse_genomes_project 16 88089647 88269203 - MGP_CASTEiJ_P0044792 Grik1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044793.1 MGP_CASTEiJ_G0022236.1 mouse_genomes_project 16 88108389 88288918 - MGP_CASTEiJ_P0044793 Grik1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044794.1 MGP_CASTEiJ_G0022236.1 mouse_genomes_project 16 88110418 88268587 - MGP_CASTEiJ_P0044794 Grik1 protein_coding protein_coding MGP_CASTEiJ_T0043109.1 MGP_CASTEiJ_G0021818.1 mouse_genomes_project 16 13379200 13513326 - MGP_CASTEiJ_P0043109 Fgd4 protein_coding protein_coding MGP_CASTEiJ_T0043110.1 MGP_CASTEiJ_G0021818.1 mouse_genomes_project 16 13384900 13560731 - MGP_CASTEiJ_P0043110 Fgd4 protein_coding protein_coding MGP_CASTEiJ_T0043111.1 MGP_CASTEiJ_G0021818.1 mouse_genomes_project 16 13384939 13479996 - MGP_CASTEiJ_P0043111 Fgd4 protein_coding protein_coding MGP_CASTEiJ_T0043112.1 MGP_CASTEiJ_G0021818.1 mouse_genomes_project 16 13393810 13513152 - Fgd4 protein_coding retained_intron MGP_CASTEiJ_T0043113.1 MGP_CASTEiJ_G0021818.1 mouse_genomes_project 16 13393810 13463499 - MGP_CASTEiJ_P0043113 Fgd4 protein_coding protein_coding MGP_CASTEiJ_T0043114.1 MGP_CASTEiJ_G0021818.1 mouse_genomes_project 16 13415276 13513318 - Fgd4 protein_coding retained_intron MGP_CASTEiJ_T0043115.1 MGP_CASTEiJ_G0021818.1 mouse_genomes_project 16 13415881 13513318 - Fgd4 protein_coding retained_intron MGP_CASTEiJ_T0043116.1 MGP_CASTEiJ_G0021818.1 mouse_genomes_project 16 13424216 13561302 - MGP_CASTEiJ_P0043116 Fgd4 protein_coding protein_coding MGP_CASTEiJ_T0043117.1 MGP_CASTEiJ_G0021818.1 mouse_genomes_project 16 13431153 13513096 - Fgd4 protein_coding retained_intron MGP_CASTEiJ_T0043118.1 MGP_CASTEiJ_G0021818.1 mouse_genomes_project 16 13443470 13560792 - Fgd4 protein_coding retained_intron MGP_CASTEiJ_T0043119.1 MGP_CASTEiJ_G0021818.1 mouse_genomes_project 16 13444449 13479996 - Fgd4 protein_coding retained_intron MGP_CASTEiJ_T0044373.1 MGP_CASTEiJ_G0022104.1 mouse_genomes_project 16 43681311 43711923 + MGP_CASTEiJ_P0044373 Atg3 protein_coding protein_coding MGP_CASTEiJ_T0044374.1 MGP_CASTEiJ_G0022104.1 mouse_genomes_project 16 43688400 43711279 + Atg3 protein_coding retained_intron MGP_CASTEiJ_T0006690.1 MGP_CASTEiJ_G0005530.1 mouse_genomes_project 16 69323749 69327960 - Gm43265 lincRNA lincRNA MGP_CASTEiJ_T0045058.1 MGP_CASTEiJ_G0022319.1 mouse_genomes_project 16 95116597 95125367 + MGP_CASTEiJ_P0045058 Ripply3 protein_coding protein_coding MGP_CASTEiJ_T0044776.1 MGP_CASTEiJ_G0022233.1 mouse_genomes_project 16 87632794 87645427 - MGP_CASTEiJ_P0044776 Cct8 protein_coding protein_coding MGP_CASTEiJ_T0044777.1 MGP_CASTEiJ_G0022233.1 mouse_genomes_project 16 87633465 87645342 - MGP_CASTEiJ_P0044777 Cct8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044778.1 MGP_CASTEiJ_G0022233.1 mouse_genomes_project 16 87633465 87645342 - MGP_CASTEiJ_P0044778 Cct8 protein_coding protein_coding MGP_CASTEiJ_T0044779.1 MGP_CASTEiJ_G0022233.1 mouse_genomes_project 16 87634392 87638387 - MGP_CASTEiJ_P0044779 Cct8 protein_coding protein_coding MGP_CASTEiJ_T0044780.1 MGP_CASTEiJ_G0022233.1 mouse_genomes_project 16 87634979 87635611 - Cct8 protein_coding retained_intron MGP_CASTEiJ_T0044781.1 MGP_CASTEiJ_G0022233.1 mouse_genomes_project 16 87635119 87635896 - Cct8 protein_coding retained_intron MGP_CASTEiJ_T0044782.1 MGP_CASTEiJ_G0022233.1 mouse_genomes_project 16 87635267 87636038 - Cct8 protein_coding retained_intron MGP_CASTEiJ_T0044783.1 MGP_CASTEiJ_G0022233.1 mouse_genomes_project 16 87638388 87640994 - Cct8 protein_coding processed_transcript MGP_CASTEiJ_T0044784.1 MGP_CASTEiJ_G0022233.1 mouse_genomes_project 16 87638474 87645413 - MGP_CASTEiJ_P0044784 Cct8 protein_coding protein_coding MGP_CASTEiJ_T0044785.1 MGP_CASTEiJ_G0022233.1 mouse_genomes_project 16 87640033 87645258 - MGP_CASTEiJ_P0044785 Cct8 protein_coding protein_coding MGP_CASTEiJ_T0042880.1 MGP_CASTEiJ_G0021759.1 mouse_genomes_project 16 5381188 5497014 - MGP_CASTEiJ_P0042880 Usp7 protein_coding protein_coding MGP_CASTEiJ_T0042881.1 MGP_CASTEiJ_G0021759.1 mouse_genomes_project 16 5381193 5433451 - MGP_CASTEiJ_P0042881 Usp7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042882.1 MGP_CASTEiJ_G0021759.1 mouse_genomes_project 16 5381739 5433374 - MGP_CASTEiJ_P0042882 Usp7 protein_coding protein_coding MGP_CASTEiJ_T0042883.1 MGP_CASTEiJ_G0021759.1 mouse_genomes_project 16 5382375 5415378 - Usp7 protein_coding processed_transcript MGP_CASTEiJ_T0042884.1 MGP_CASTEiJ_G0021759.1 mouse_genomes_project 16 5387761 5390414 - Usp7 protein_coding retained_intron MGP_CASTEiJ_T0042885.1 MGP_CASTEiJ_G0021759.1 mouse_genomes_project 16 5388261 5389165 - Usp7 protein_coding retained_intron MGP_CASTEiJ_T0042886.1 MGP_CASTEiJ_G0021759.1 mouse_genomes_project 16 5389059 5390116 - Usp7 protein_coding retained_intron MGP_CASTEiJ_T0042887.1 MGP_CASTEiJ_G0021759.1 mouse_genomes_project 16 5389234 5398350 - MGP_CASTEiJ_P0042887 Usp7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042888.1 MGP_CASTEiJ_G0021759.1 mouse_genomes_project 16 5391740 5395381 - Usp7 protein_coding retained_intron MGP_CASTEiJ_T0042889.1 MGP_CASTEiJ_G0021759.1 mouse_genomes_project 16 5395065 5398548 - Usp7 protein_coding retained_intron MGP_CASTEiJ_T0042890.1 MGP_CASTEiJ_G0021759.1 mouse_genomes_project 16 5396567 5396932 - Usp7 protein_coding retained_intron MGP_CASTEiJ_T0042891.1 MGP_CASTEiJ_G0021759.1 mouse_genomes_project 16 5396576 5397841 - Usp7 protein_coding retained_intron MGP_CASTEiJ_T0042892.1 MGP_CASTEiJ_G0021759.1 mouse_genomes_project 16 5397581 5398449 - Usp7 protein_coding retained_intron MGP_CASTEiJ_T0044904.1 MGP_CASTEiJ_G0022288.1 mouse_genomes_project 16 91844097 91879534 + MGP_CASTEiJ_P0044904 Ifnar2 protein_coding protein_coding MGP_CASTEiJ_T0044905.1 MGP_CASTEiJ_G0022288.1 mouse_genomes_project 16 91844155 91867759 + MGP_CASTEiJ_P0044905 Ifnar2 protein_coding protein_coding MGP_CASTEiJ_T0044906.1 MGP_CASTEiJ_G0022288.1 mouse_genomes_project 16 91844164 91867936 + MGP_CASTEiJ_P0044906 Ifnar2 protein_coding protein_coding MGP_CASTEiJ_T0044907.1 MGP_CASTEiJ_G0022288.1 mouse_genomes_project 16 91844213 91879319 + MGP_CASTEiJ_P0044907 Ifnar2 protein_coding protein_coding MGP_CASTEiJ_T0044908.1 MGP_CASTEiJ_G0022288.1 mouse_genomes_project 16 91861712 91865703 + MGP_CASTEiJ_P0044908 Ifnar2 protein_coding protein_coding MGP_CASTEiJ_T0100707.1 MGP_CASTEiJ_G0037620.1 mouse_genomes_project 16 17954946 17955021 + Snord66 snoRNA snoRNA MGP_CASTEiJ_T0042847.1 MGP_CASTEiJ_G0021749.1 mouse_genomes_project 16 1810772 1823806 - MGP_CASTEiJ_P0042847 Eef2kmt protein_coding protein_coding MGP_CASTEiJ_T0042848.1 MGP_CASTEiJ_G0021749.1 mouse_genomes_project 16 1811495 1823764 - Eef2kmt protein_coding retained_intron MGP_CASTEiJ_T0042849.1 MGP_CASTEiJ_G0021749.1 mouse_genomes_project 16 1815216 1823779 - MGP_CASTEiJ_P0042849 Eef2kmt protein_coding protein_coding MGP_CASTEiJ_T0042850.1 MGP_CASTEiJ_G0021749.1 mouse_genomes_project 16 1815228 1816712 - Eef2kmt protein_coding retained_intron MGP_CASTEiJ_T0042851.1 MGP_CASTEiJ_G0021749.1 mouse_genomes_project 16 1816916 1823752 - Eef2kmt protein_coding retained_intron MGP_CASTEiJ_T0043516.1 MGP_CASTEiJ_G0021905.1 mouse_genomes_project 16 17797020 17805871 + MGP_CASTEiJ_P0043516 Ap2m1 protein_coding protein_coding MGP_CASTEiJ_T0043517.1 MGP_CASTEiJ_G0021905.1 mouse_genomes_project 16 17797020 17809704 + MGP_CASTEiJ_P0043517 Ap2m1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043518.1 MGP_CASTEiJ_G0021905.1 mouse_genomes_project 16 17797022 17806729 + MGP_CASTEiJ_P0043518 Ap2m1 protein_coding protein_coding MGP_CASTEiJ_T0043519.1 MGP_CASTEiJ_G0021905.1 mouse_genomes_project 16 17797091 17799405 + Ap2m1 protein_coding retained_intron MGP_CASTEiJ_T0043520.1 MGP_CASTEiJ_G0021905.1 mouse_genomes_project 16 17801539 17804203 + Ap2m1 protein_coding processed_transcript MGP_CASTEiJ_T0043521.1 MGP_CASTEiJ_G0021905.1 mouse_genomes_project 16 17802186 17803966 + Ap2m1 protein_coding retained_intron MGP_CASTEiJ_T0043522.1 MGP_CASTEiJ_G0021905.1 mouse_genomes_project 16 17802316 17803841 + Ap2m1 protein_coding retained_intron MGP_CASTEiJ_T0043523.1 MGP_CASTEiJ_G0021905.1 mouse_genomes_project 16 17802536 17803644 + Ap2m1 protein_coding retained_intron MGP_CASTEiJ_T0043524.1 MGP_CASTEiJ_G0021905.1 mouse_genomes_project 16 17803873 17805629 + Ap2m1 protein_coding retained_intron MGP_CASTEiJ_T0043525.1 MGP_CASTEiJ_G0021905.1 mouse_genomes_project 16 17804005 17804634 + Ap2m1 protein_coding retained_intron MGP_CASTEiJ_T0043526.1 MGP_CASTEiJ_G0021905.1 mouse_genomes_project 16 17804442 17805596 + Ap2m1 protein_coding retained_intron MGP_CASTEiJ_T0044916.1 MGP_CASTEiJ_G0022291.1 mouse_genomes_project 16 91969987 91994173 + MGP_CASTEiJ_P0044916 Ifnar1 protein_coding protein_coding MGP_CASTEiJ_T0044917.1 MGP_CASTEiJ_G0022291.1 mouse_genomes_project 16 91969998 91994169 + MGP_CASTEiJ_P0044917 Ifnar1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044918.1 MGP_CASTEiJ_G0022291.1 mouse_genomes_project 16 91970013 91994173 + MGP_CASTEiJ_P0044918 Ifnar1 protein_coding protein_coding MGP_CASTEiJ_T0044919.1 MGP_CASTEiJ_G0022291.1 mouse_genomes_project 16 91970026 91976365 + Ifnar1 protein_coding retained_intron MGP_CASTEiJ_T0044920.1 MGP_CASTEiJ_G0022291.1 mouse_genomes_project 16 91970085 91982316 + MGP_CASTEiJ_P0044920 Ifnar1 protein_coding protein_coding MGP_CASTEiJ_T0044565.1 MGP_CASTEiJ_G0022159.1 mouse_genomes_project 16 57457090 57518182 - MGP_CASTEiJ_P0044565 St3gal6 protein_coding protein_coding MGP_CASTEiJ_T0044566.1 MGP_CASTEiJ_G0022159.1 mouse_genomes_project 16 57462517 57518407 - St3gal6 protein_coding processed_transcript MGP_CASTEiJ_T0044567.1 MGP_CASTEiJ_G0022159.1 mouse_genomes_project 16 57474026 57477031 - St3gal6 protein_coding retained_intron MGP_CASTEiJ_T0044568.1 MGP_CASTEiJ_G0022159.1 mouse_genomes_project 16 57476522 57518298 - St3gal6 protein_coding processed_transcript MGP_CASTEiJ_T0044569.1 MGP_CASTEiJ_G0022159.1 mouse_genomes_project 16 57476535 57519023 - MGP_CASTEiJ_P0044569 St3gal6 protein_coding protein_coding MGP_CASTEiJ_T0044570.1 MGP_CASTEiJ_G0022159.1 mouse_genomes_project 16 57481297 57519023 - MGP_CASTEiJ_P0044570 St3gal6 protein_coding protein_coding MGP_CASTEiJ_T0044571.1 MGP_CASTEiJ_G0022159.1 mouse_genomes_project 16 57481349 57486588 - St3gal6 protein_coding processed_transcript MGP_CASTEiJ_T0044572.1 MGP_CASTEiJ_G0022159.1 mouse_genomes_project 16 57481351 57518198 - St3gal6 protein_coding processed_transcript MGP_CASTEiJ_T0044573.1 MGP_CASTEiJ_G0022159.1 mouse_genomes_project 16 57481360 57518988 - St3gal6 protein_coding processed_transcript MGP_CASTEiJ_T0044574.1 MGP_CASTEiJ_G0022159.1 mouse_genomes_project 16 57481360 57518578 - St3gal6 protein_coding processed_transcript MGP_CASTEiJ_T0044575.1 MGP_CASTEiJ_G0022159.1 mouse_genomes_project 16 57490129 57518612 - St3gal6 protein_coding processed_transcript MGP_CASTEiJ_T0044576.1 MGP_CASTEiJ_G0022159.1 mouse_genomes_project 16 57490129 57495158 - St3gal6 protein_coding retained_intron MGP_CASTEiJ_T0098525.1 MGP_CASTEiJ_G0035456.1 mouse_genomes_project 16 5600343 5600436 - Gm22224 rRNA rRNA MGP_CASTEiJ_T0042939.1 MGP_CASTEiJ_G0021774.1 mouse_genomes_project 16 7625691 7626417 - MGP_CASTEiJ_P0042939 Prm2 protein_coding protein_coding MGP_CASTEiJ_T0042940.1 MGP_CASTEiJ_G0021774.1 mouse_genomes_project 16 7625848 7630532 - MGP_CASTEiJ_P0042940 Prm2 protein_coding protein_coding MGP_CASTEiJ_T0009862.1 MGP_CASTEiJ_G0008050.1 mouse_genomes_project 16 26323176 26323285 - Mir690 miRNA miRNA MGP_CASTEiJ_T0006662.1 MGP_CASTEiJ_G0005508.1 mouse_genomes_project 16 22004511 22006478 - Lppos lincRNA lincRNA MGP_CASTEiJ_T0099517.1 MGP_CASTEiJ_G0036430.1 mouse_genomes_project 16 95225101 95225261 + Gm23692 snRNA snRNA MGP_CASTEiJ_T0044490.1 MGP_CASTEiJ_G0022139.1 mouse_genomes_project 16 54893943 54931931 - MGP_CASTEiJ_P0044490 Cep97 protein_coding protein_coding MGP_CASTEiJ_T0044491.1 MGP_CASTEiJ_G0022139.1 mouse_genomes_project 16 54919793 54931933 - MGP_CASTEiJ_P0044491 Cep97 protein_coding protein_coding MGP_CASTEiJ_T0044492.1 MGP_CASTEiJ_G0022139.1 mouse_genomes_project 16 54919800 54931990 - MGP_CASTEiJ_P0044492 Cep97 protein_coding protein_coding MGP_CASTEiJ_T0044493.1 MGP_CASTEiJ_G0022139.1 mouse_genomes_project 16 54919991 54931969 - MGP_CASTEiJ_P0044493 Cep97 protein_coding protein_coding MGP_CASTEiJ_T0009840.1 MGP_CASTEiJ_G0008028.1 mouse_genomes_project 16 7817835 7817961 + Gm26268 miRNA miRNA MGP_CASTEiJ_T0044593.1 MGP_CASTEiJ_G0022169.1 mouse_genomes_project 16 57915169 57924780 - MGP_CASTEiJ_P0044593 protein_coding protein_coding MGP_CASTEiJ_T0044594.1 MGP_CASTEiJ_G0022169.1 mouse_genomes_project 16 57918590 57919570 - MGP_CASTEiJ_P0044594 protein_coding protein_coding MGP_CASTEiJ_T0044721.1 MGP_CASTEiJ_G0022217.1 mouse_genomes_project 16 78362268 78389168 - MGP_CASTEiJ_P0044721 D16Ertd472e protein_coding protein_coding MGP_CASTEiJ_T0044722.1 MGP_CASTEiJ_G0022217.1 mouse_genomes_project 16 78362945 78389168 - MGP_CASTEiJ_P0044722 D16Ertd472e protein_coding protein_coding MGP_CASTEiJ_T0044723.1 MGP_CASTEiJ_G0022217.1 mouse_genomes_project 16 78363242 78389168 - MGP_CASTEiJ_P0044723 D16Ertd472e protein_coding protein_coding MGP_CASTEiJ_T0043351.1 MGP_CASTEiJ_G0021865.1 mouse_genomes_project 16 15312502 15322803 - MGP_CASTEiJ_P0043351 Ranbp1 protein_coding protein_coding MGP_CASTEiJ_T0045049.1 MGP_CASTEiJ_G0022316.1 mouse_genomes_project 16 94686666 94697019 - MGP_CASTEiJ_P0045049 Cldn14 protein_coding protein_coding MGP_CASTEiJ_T0045050.1 MGP_CASTEiJ_G0022316.1 mouse_genomes_project 16 94686666 94697271 - MGP_CASTEiJ_P0045050 Cldn14 protein_coding protein_coding MGP_CASTEiJ_T0045051.1 MGP_CASTEiJ_G0022316.1 mouse_genomes_project 16 94686667 94785470 - MGP_CASTEiJ_P0045051 Cldn14 protein_coding protein_coding MGP_CASTEiJ_T0045052.1 MGP_CASTEiJ_G0022316.1 mouse_genomes_project 16 94687384 94697019 - Cldn14 protein_coding processed_transcript MGP_CASTEiJ_T0045053.1 MGP_CASTEiJ_G0022316.1 mouse_genomes_project 16 94687442 94697271 - Cldn14 protein_coding processed_transcript MGP_CASTEiJ_T0043445.1 MGP_CASTEiJ_G0021882.1 mouse_genomes_project 16 15988534 15994127 - MGP_CASTEiJ_P0043445 Mrpl40 protein_coding protein_coding MGP_CASTEiJ_T0043446.1 MGP_CASTEiJ_G0021882.1 mouse_genomes_project 16 15988742 15993899 - MGP_CASTEiJ_P0043446 Mrpl40 protein_coding protein_coding MGP_CASTEiJ_T0016755.1 MGP_CASTEiJ_G0014633.1 mouse_genomes_project 16 54955699 54971041 + Gm28037 processed_transcript processed_transcript MGP_CASTEiJ_T0016783.1 MGP_CASTEiJ_G0014644.1 mouse_genomes_project 16 92449919 92483671 + D430001F17Rik processed_transcript processed_transcript MGP_CASTEiJ_T0042998.1 MGP_CASTEiJ_G0021787.1 mouse_genomes_project 16 8793185 8823507 + MGP_CASTEiJ_P0042998 Gm9961 protein_coding protein_coding MGP_CASTEiJ_T0044800.1 MGP_CASTEiJ_G0022242.1 mouse_genomes_project 16 88924330 88924973 - MGP_CASTEiJ_P0044800 Krtap27-1 protein_coding protein_coding MGP_CASTEiJ_T0100724.1 MGP_CASTEiJ_G0037637.1 mouse_genomes_project 16 42392584 42392717 - Gm25989 snoRNA snoRNA MGP_CASTEiJ_T0044161.1 MGP_CASTEiJ_G0022057.1 mouse_genomes_project 16 35774809 35808303 + MGP_CASTEiJ_P0044161 Rabl3 protein_coding protein_coding MGP_CASTEiJ_T0044162.1 MGP_CASTEiJ_G0022057.1 mouse_genomes_project 16 35774824 35808300 + MGP_CASTEiJ_P0044162 Rabl3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044163.1 MGP_CASTEiJ_G0022057.1 mouse_genomes_project 16 35774829 35799976 + Rabl3 protein_coding retained_intron MGP_CASTEiJ_T0044164.1 MGP_CASTEiJ_G0022057.1 mouse_genomes_project 16 35799661 35803867 + Rabl3 protein_coding retained_intron MGP_CASTEiJ_T0100702.1 MGP_CASTEiJ_G0037615.1 mouse_genomes_project 16 5163868 5163950 - Gm23706 snoRNA snoRNA MGP_CASTEiJ_T0006709.1 MGP_CASTEiJ_G0005542.1 mouse_genomes_project 16 96806352 96807655 + Gm15340 lincRNA lincRNA MGP_CASTEiJ_T0012804.1 MGP_CASTEiJ_G0010967.1 mouse_genomes_project 16 49417547 49418864 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003562.1 MGP_CASTEiJ_G0003230.1 mouse_genomes_project 16 37136478 37136815 + antisense antisense MGP_CASTEiJ_T0043735.1 MGP_CASTEiJ_G0021956.1 mouse_genomes_project 16 24260264 24404062 + MGP_CASTEiJ_P0043735 Il1rap protein_coding protein_coding MGP_CASTEiJ_T0043736.1 MGP_CASTEiJ_G0021956.1 mouse_genomes_project 16 24260302 24403152 + MGP_CASTEiJ_P0043736 Il1rap protein_coding protein_coding MGP_CASTEiJ_T0043737.1 MGP_CASTEiJ_G0021956.1 mouse_genomes_project 16 24260313 24381331 + MGP_CASTEiJ_P0043737 Il1rap protein_coding protein_coding MGP_CASTEiJ_T0043738.1 MGP_CASTEiJ_G0021956.1 mouse_genomes_project 16 24260317 24396508 + MGP_CASTEiJ_P0043738 Il1rap protein_coding protein_coding MGP_CASTEiJ_T0043739.1 MGP_CASTEiJ_G0021956.1 mouse_genomes_project 16 24302567 24396509 + MGP_CASTEiJ_P0043739 Il1rap protein_coding unknown_likely_coding MGP_CASTEiJ_T0043740.1 MGP_CASTEiJ_G0021956.1 mouse_genomes_project 16 24307051 24393830 + MGP_CASTEiJ_P0043740 Il1rap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043741.1 MGP_CASTEiJ_G0021956.1 mouse_genomes_project 16 24401211 24408868 + MGP_CASTEiJ_P0043741 Il1rap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043742.1 MGP_CASTEiJ_G0021956.1 mouse_genomes_project 16 24405792 24406979 + Il1rap protein_coding processed_transcript MGP_CASTEiJ_T0016780.1 MGP_CASTEiJ_G0014641.1 mouse_genomes_project 16 91943832 91950492 + A930006K02Rik processed_transcript processed_transcript MGP_CASTEiJ_T0099516.1 MGP_CASTEiJ_G0036429.1 mouse_genomes_project 16 92572579 92572677 + Gm23210 snRNA snRNA MGP_CASTEiJ_T0042804.1 MGP_CASTEiJ_G0021735.1 mouse_genomes_project 16 1429874 1489239 + MGP_CASTEiJ_P0042804 Mgrn1 protein_coding protein_coding MGP_CASTEiJ_T0042805.1 MGP_CASTEiJ_G0021735.1 mouse_genomes_project 16 1429874 1489239 + MGP_CASTEiJ_P0042805 Mgrn1 protein_coding protein_coding MGP_CASTEiJ_T0042806.1 MGP_CASTEiJ_G0021735.1 mouse_genomes_project 16 1430145 1489247 + MGP_CASTEiJ_P0042806 Mgrn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044753.1 MGP_CASTEiJ_G0022225.1 mouse_genomes_project 16 85065532 85300272 - MGP_CASTEiJ_P0044753 App protein_coding protein_coding MGP_CASTEiJ_T0043855.1 MGP_CASTEiJ_G0021985.1 mouse_genomes_project 16 29859623 29869201 + MGP_CASTEiJ_P0043855 Ncbp2 protein_coding protein_coding MGP_CASTEiJ_T0043856.1 MGP_CASTEiJ_G0021985.1 mouse_genomes_project 16 29859711 29867863 + Ncbp2 protein_coding retained_intron MGP_CASTEiJ_T0043857.1 MGP_CASTEiJ_G0021985.1 mouse_genomes_project 16 29859716 29872512 + Ncbp2 protein_coding processed_transcript MGP_CASTEiJ_T0043858.1 MGP_CASTEiJ_G0021985.1 mouse_genomes_project 16 29859723 29867891 + MGP_CASTEiJ_P0043858 Ncbp2 protein_coding protein_coding MGP_CASTEiJ_T0044207.1 MGP_CASTEiJ_G0022074.1 mouse_genomes_project 16 36817288 36844640 - MGP_CASTEiJ_P0044207 Poglut1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044208.1 MGP_CASTEiJ_G0022074.1 mouse_genomes_project 16 36817364 36844688 - MGP_CASTEiJ_P0044208 Poglut1 protein_coding protein_coding MGP_CASTEiJ_T0044209.1 MGP_CASTEiJ_G0022074.1 mouse_genomes_project 16 36817367 36844652 - Poglut1 protein_coding retained_intron MGP_CASTEiJ_T0044210.1 MGP_CASTEiJ_G0022074.1 mouse_genomes_project 16 36821529 36825964 - Poglut1 protein_coding retained_intron MGP_CASTEiJ_T0044211.1 MGP_CASTEiJ_G0022074.1 mouse_genomes_project 16 36827568 36831433 - Poglut1 protein_coding retained_intron MGP_CASTEiJ_T0044212.1 MGP_CASTEiJ_G0022074.1 mouse_genomes_project 16 36842449 36844652 - Poglut1 protein_coding retained_intron MGP_CASTEiJ_T0009859.1 MGP_CASTEiJ_G0008047.1 mouse_genomes_project 16 20044198 20044305 + Mir6362 miRNA miRNA MGP_CASTEiJ_T0043025.1 MGP_CASTEiJ_G0021795.1 mouse_genomes_project 16 10736473 10778530 + MGP_CASTEiJ_P0043025 Rrn3 protein_coding protein_coding MGP_CASTEiJ_T0044420.1 MGP_CASTEiJ_G0022116.1 mouse_genomes_project 16 44605486 44684644 - MGP_CASTEiJ_P0044420 Cd96 protein_coding protein_coding MGP_CASTEiJ_T0003566.1 MGP_CASTEiJ_G0003234.1 mouse_genomes_project 16 44511344 44538423 + Gm15638 antisense antisense MGP_CASTEiJ_T0003567.1 MGP_CASTEiJ_G0003234.1 mouse_genomes_project 16 44511351 44523042 + Gm15638 antisense antisense MGP_CASTEiJ_T0003568.1 MGP_CASTEiJ_G0003234.1 mouse_genomes_project 16 44511356 44514414 + Gm15638 antisense antisense MGP_CASTEiJ_T0042672.1 MGP_CASTEiJ_G0021708.1 mouse_genomes_project 16 155425 168959 - MGP_CASTEiJ_P0042672 Mefv protein_coding unknown_likely_coding MGP_CASTEiJ_T0042673.1 MGP_CASTEiJ_G0021708.1 mouse_genomes_project 16 155430 169021 - MGP_CASTEiJ_P0042673 Mefv protein_coding protein_coding MGP_CASTEiJ_T0042674.1 MGP_CASTEiJ_G0021708.1 mouse_genomes_project 16 155430 169021 - MGP_CASTEiJ_P0042674 Mefv protein_coding protein_coding MGP_CASTEiJ_T0098849.1 MGP_CASTEiJ_G0035775.1 mouse_genomes_project 16 92624074 92625995 + Gm16310 sense_intronic sense_intronic MGP_CASTEiJ_T0042675.1 MGP_CASTEiJ_G0021709.1 mouse_genomes_project 16 202239 209977 + MGP_CASTEiJ_P0042675 Zfp263 protein_coding protein_coding MGP_CASTEiJ_T0042676.1 MGP_CASTEiJ_G0021709.1 mouse_genomes_project 16 202321 209986 + Zfp263 protein_coding retained_intron MGP_CASTEiJ_T0042677.1 MGP_CASTEiJ_G0021709.1 mouse_genomes_project 16 202328 209088 + Zfp263 protein_coding processed_transcript MGP_CASTEiJ_T0042678.1 MGP_CASTEiJ_G0021709.1 mouse_genomes_project 16 202378 209986 + MGP_CASTEiJ_P0042678 Zfp263 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042679.1 MGP_CASTEiJ_G0021709.1 mouse_genomes_project 16 202506 208475 + Zfp263 protein_coding processed_transcript MGP_CASTEiJ_T0042680.1 MGP_CASTEiJ_G0021709.1 mouse_genomes_project 16 202741 208300 + Zfp263 protein_coding processed_transcript MGP_CASTEiJ_T0042681.1 MGP_CASTEiJ_G0021709.1 mouse_genomes_project 16 207077 209980 + MGP_CASTEiJ_P0042681 Zfp263 protein_coding protein_coding MGP_CASTEiJ_T0044607.1 MGP_CASTEiJ_G0022175.1 mouse_genomes_project 16 58039710 58040747 - MGP_CASTEiJ_P0044607 Olfr190 protein_coding protein_coding MGP_CASTEiJ_T0044608.1 MGP_CASTEiJ_G0022175.1 mouse_genomes_project 16 58039710 58083975 - MGP_CASTEiJ_P0044608 Olfr190 protein_coding protein_coding MGP_CASTEiJ_T0006698.1 MGP_CASTEiJ_G0005535.1 mouse_genomes_project 16 90976165 90976885 + 1110008E08Rik lincRNA lincRNA MGP_CASTEiJ_T0006699.1 MGP_CASTEiJ_G0005535.1 mouse_genomes_project 16 90976165 90976887 + 1110008E08Rik lincRNA lincRNA MGP_CASTEiJ_T0098715.1 MGP_CASTEiJ_G0035646.1 mouse_genomes_project 16 31137405 31137839 - Gm23916 ribozyme ribozyme MGP_CASTEiJ_T0011081.1 MGP_CASTEiJ_G0009269.1 mouse_genomes_project 16 46212951 46213265 - Gm25318 misc_RNA misc_RNA MGP_CASTEiJ_T0044760.1 MGP_CASTEiJ_G0022229.1 mouse_genomes_project 16 87501036 87514344 + MGP_CASTEiJ_P0044760 N6amt1 protein_coding protein_coding MGP_CASTEiJ_T0044761.1 MGP_CASTEiJ_G0022229.1 mouse_genomes_project 16 87501038 87516351 + MGP_CASTEiJ_P0044761 N6amt1 protein_coding protein_coding MGP_CASTEiJ_T0044762.1 MGP_CASTEiJ_G0022229.1 mouse_genomes_project 16 87501046 87516237 + MGP_CASTEiJ_P0044762 N6amt1 protein_coding protein_coding MGP_CASTEiJ_T0043835.1 MGP_CASTEiJ_G0021981.1 mouse_genomes_project 16 29561528 29777699 + MGP_CASTEiJ_P0043835 Dlg1 protein_coding protein_coding MGP_CASTEiJ_T0043836.1 MGP_CASTEiJ_G0021981.1 mouse_genomes_project 16 29561996 29775318 + MGP_CASTEiJ_P0043836 Dlg1 protein_coding protein_coding MGP_CASTEiJ_T0043837.1 MGP_CASTEiJ_G0021981.1 mouse_genomes_project 16 29562022 29777705 + MGP_CASTEiJ_P0043837 Dlg1 protein_coding protein_coding MGP_CASTEiJ_T0043838.1 MGP_CASTEiJ_G0021981.1 mouse_genomes_project 16 29562042 29777698 + MGP_CASTEiJ_P0043838 Dlg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043839.1 MGP_CASTEiJ_G0021981.1 mouse_genomes_project 16 29562126 29777695 + MGP_CASTEiJ_P0043839 Dlg1 protein_coding protein_coding MGP_CASTEiJ_T0043840.1 MGP_CASTEiJ_G0021981.1 mouse_genomes_project 16 29562237 29777033 + MGP_CASTEiJ_P0043840 Dlg1 protein_coding protein_coding MGP_CASTEiJ_T0043841.1 MGP_CASTEiJ_G0021981.1 mouse_genomes_project 16 29582476 29679488 + Dlg1 protein_coding retained_intron MGP_CASTEiJ_T0043842.1 MGP_CASTEiJ_G0021981.1 mouse_genomes_project 16 29657796 29775733 + MGP_CASTEiJ_P0043842 Dlg1 protein_coding protein_coding MGP_CASTEiJ_T0043843.1 MGP_CASTEiJ_G0021981.1 mouse_genomes_project 16 29698496 29744139 + MGP_CASTEiJ_P0043843 Dlg1 protein_coding protein_coding MGP_CASTEiJ_T0043844.1 MGP_CASTEiJ_G0021981.1 mouse_genomes_project 16 29730655 29737811 + Dlg1 protein_coding retained_intron MGP_CASTEiJ_T0043845.1 MGP_CASTEiJ_G0021981.1 mouse_genomes_project 16 29737589 29761597 + MGP_CASTEiJ_P0043845 Dlg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043846.1 MGP_CASTEiJ_G0021981.1 mouse_genomes_project 16 29748644 29761552 + Dlg1 protein_coding retained_intron MGP_CASTEiJ_T0043847.1 MGP_CASTEiJ_G0021981.1 mouse_genomes_project 16 29756261 29766672 + Dlg1 protein_coding retained_intron MGP_CASTEiJ_T0043848.1 MGP_CASTEiJ_G0021981.1 mouse_genomes_project 16 29770942 29775320 + Dlg1 protein_coding retained_intron MGP_CASTEiJ_T0098844.1 MGP_CASTEiJ_G0035770.1 mouse_genomes_project 16 1308824 1310537 - Gm15835 sense_intronic sense_intronic MGP_CASTEiJ_T0012799.1 MGP_CASTEiJ_G0010962.1 mouse_genomes_project 16 43730020 43730422 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098347.1 MGP_CASTEiJ_G0035278.1 mouse_genomes_project 16 34441993 34442087 - pseudogene pseudogene MGP_CASTEiJ_T0044625.1 MGP_CASTEiJ_G0022187.1 mouse_genomes_project 16 58521406 58558082 - Crybg3 protein_coding retained_intron MGP_CASTEiJ_T0044626.1 MGP_CASTEiJ_G0022187.1 mouse_genomes_project 16 58522726 58592944 - MGP_CASTEiJ_P0044626 Crybg3 protein_coding protein_coding MGP_CASTEiJ_T0044627.1 MGP_CASTEiJ_G0022187.1 mouse_genomes_project 16 58558926 58573444 - Crybg3 protein_coding processed_transcript MGP_CASTEiJ_T0044628.1 MGP_CASTEiJ_G0022187.1 mouse_genomes_project 16 58578633 58591162 - MGP_CASTEiJ_P0044628 Crybg3 protein_coding protein_coding MGP_CASTEiJ_T0100719.1 MGP_CASTEiJ_G0037632.1 mouse_genomes_project 16 33889321 33889456 - Gm25967 snoRNA snoRNA MGP_CASTEiJ_T0012769.1 MGP_CASTEiJ_G0010932.1 mouse_genomes_project 16 17241376 17241784 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006653.1 MGP_CASTEiJ_G0005501.1 mouse_genomes_project 16 14038610 14040202 + 1700056N10Rik lincRNA lincRNA MGP_CASTEiJ_T0043898.1 MGP_CASTEiJ_G0021996.1 mouse_genomes_project 16 30267666 30332371 + MGP_CASTEiJ_P0043898 Ubxn7 protein_coding protein_coding MGP_CASTEiJ_T0044401.1 MGP_CASTEiJ_G0022112.1 mouse_genomes_project 16 44263005 44276376 - MGP_CASTEiJ_P0044401 Tagln3 protein_coding protein_coding MGP_CASTEiJ_T0043465.1 MGP_CASTEiJ_G0021893.1 mouse_genomes_project 16 16902065 16962917 - MGP_CASTEiJ_P0043465 Lamp3 protein_coding protein_coding MGP_CASTEiJ_T0044203.1 MGP_CASTEiJ_G0022071.1 mouse_genomes_project 16 36732645 36739925 - MGP_CASTEiJ_P0044203 Adprh protein_coding protein_coding MGP_CASTEiJ_T0099512.1 MGP_CASTEiJ_G0036425.1 mouse_genomes_project 16 88868691 88868775 - Gm23587 snRNA snRNA MGP_CASTEiJ_T0006644.1 MGP_CASTEiJ_G0005493.1 mouse_genomes_project 16 1485481 1490511 - Gm16861 lincRNA lincRNA MGP_CASTEiJ_T0043907.1 MGP_CASTEiJ_G0022001.1 mouse_genomes_project 16 30448587 30459532 + MGP_CASTEiJ_P0043907 Zdhhc19 protein_coding protein_coding MGP_CASTEiJ_T0043908.1 MGP_CASTEiJ_G0022001.1 mouse_genomes_project 16 30451939 30520020 + Zdhhc19 protein_coding processed_transcript MGP_CASTEiJ_T0044056.1 MGP_CASTEiJ_G0022032.1 mouse_genomes_project 16 34006424 34047271 - MGP_CASTEiJ_P0044056 Parp14 protein_coding protein_coding MGP_CASTEiJ_T0044057.1 MGP_CASTEiJ_G0022032.1 mouse_genomes_project 16 34031345 34047101 - Parp14 protein_coding retained_intron MGP_CASTEiJ_T0044058.1 MGP_CASTEiJ_G0022032.1 mouse_genomes_project 16 34039896 34047101 - Parp14 protein_coding retained_intron MGP_CASTEiJ_T0044834.1 MGP_CASTEiJ_G0022273.1 mouse_genomes_project 16 90128870 90204895 - MGP_CASTEiJ_P0044834 Tiam1 protein_coding protein_coding MGP_CASTEiJ_T0044835.1 MGP_CASTEiJ_G0022273.1 mouse_genomes_project 16 90128870 90329914 - MGP_CASTEiJ_P0044835 Tiam1 protein_coding protein_coding MGP_CASTEiJ_T0044836.1 MGP_CASTEiJ_G0022273.1 mouse_genomes_project 16 90128870 90314474 - MGP_CASTEiJ_P0044836 Tiam1 protein_coding protein_coding MGP_CASTEiJ_T0044837.1 MGP_CASTEiJ_G0022273.1 mouse_genomes_project 16 90128870 90329914 - MGP_CASTEiJ_P0044837 Tiam1 protein_coding protein_coding MGP_CASTEiJ_T0044838.1 MGP_CASTEiJ_G0022273.1 mouse_genomes_project 16 90128875 90139796 - MGP_CASTEiJ_P0044838 Tiam1 protein_coding protein_coding MGP_CASTEiJ_T0044839.1 MGP_CASTEiJ_G0022273.1 mouse_genomes_project 16 90129210 90258038 - MGP_CASTEiJ_P0044839 Tiam1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044840.1 MGP_CASTEiJ_G0022273.1 mouse_genomes_project 16 90129488 90161288 - MGP_CASTEiJ_P0044840 Tiam1 protein_coding protein_coding MGP_CASTEiJ_T0044841.1 MGP_CASTEiJ_G0022273.1 mouse_genomes_project 16 90129617 90180959 - Tiam1 protein_coding retained_intron MGP_CASTEiJ_T0044842.1 MGP_CASTEiJ_G0022273.1 mouse_genomes_project 16 90130180 90137057 - Tiam1 protein_coding processed_transcript MGP_CASTEiJ_T0044843.1 MGP_CASTEiJ_G0022273.1 mouse_genomes_project 16 90134724 90160976 - MGP_CASTEiJ_P0044843 Tiam1 protein_coding protein_coding MGP_CASTEiJ_T0044844.1 MGP_CASTEiJ_G0022273.1 mouse_genomes_project 16 90247733 90329914 - Tiam1 protein_coding processed_transcript MGP_CASTEiJ_T0044845.1 MGP_CASTEiJ_G0022273.1 mouse_genomes_project 16 90247774 90314384 - Tiam1 protein_coding processed_transcript MGP_CASTEiJ_T0044846.1 MGP_CASTEiJ_G0022273.1 mouse_genomes_project 16 90247844 90270245 - Tiam1 protein_coding processed_transcript MGP_CASTEiJ_T0044847.1 MGP_CASTEiJ_G0022273.1 mouse_genomes_project 16 90257617 90309768 - Tiam1 protein_coding retained_intron MGP_CASTEiJ_T0044848.1 MGP_CASTEiJ_G0022273.1 mouse_genomes_project 16 90257943 90329114 - Tiam1 protein_coding processed_transcript MGP_CASTEiJ_T0044849.1 MGP_CASTEiJ_G0022273.1 mouse_genomes_project 16 90309625 90338121 - Tiam1 protein_coding processed_transcript MGP_CASTEiJ_T0100714.1 MGP_CASTEiJ_G0037627.1 mouse_genomes_project 16 28748637 28748772 + Gm25375 snoRNA snoRNA MGP_CASTEiJ_T0044856.1 MGP_CASTEiJ_G0022277.1 mouse_genomes_project 16 91146489 91154628 - Mis18a protein_coding retained_intron MGP_CASTEiJ_T0044857.1 MGP_CASTEiJ_G0022277.1 mouse_genomes_project 16 91146489 91154628 - MGP_CASTEiJ_P0044857 Mis18a protein_coding protein_coding MGP_CASTEiJ_T0044858.1 MGP_CASTEiJ_G0022277.1 mouse_genomes_project 16 91148622 91154363 - Mis18a protein_coding retained_intron MGP_CASTEiJ_T0000919.1 MGP_CASTEiJ_G0000857.1 mouse_genomes_project 16 41796817 41797165 - TEC TEC MGP_CASTEiJ_T0044666.1 MGP_CASTEiJ_G0022201.1 mouse_genomes_project 16 65011587 65060367 + MGP_CASTEiJ_P0044666 Vgll3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044667.1 MGP_CASTEiJ_G0022201.1 mouse_genomes_project 16 65011816 65062709 + MGP_CASTEiJ_P0044667 Vgll3 protein_coding protein_coding MGP_CASTEiJ_T0009868.1 MGP_CASTEiJ_G0008056.1 mouse_genomes_project 16 38745607 38745709 - Gm27887 miRNA miRNA MGP_CASTEiJ_T0000923.1 MGP_CASTEiJ_G0000861.1 mouse_genomes_project 16 77160330 77160995 + TEC TEC MGP_CASTEiJ_T0044087.1 MGP_CASTEiJ_G0022044.1 mouse_genomes_project 16 34493634 34494338 - MGP_CASTEiJ_P0044087 protein_coding protein_coding MGP_CASTEiJ_T0043888.1 MGP_CASTEiJ_G0021991.1 mouse_genomes_project 16 30115456 30116223 + MGP_CASTEiJ_P0043888 Bex6 protein_coding protein_coding MGP_CASTEiJ_T0044805.1 MGP_CASTEiJ_G0022247.1 mouse_genomes_project 16 89042281 89042954 + MGP_CASTEiJ_P0044805 Gm5965 protein_coding protein_coding MGP_CASTEiJ_T0044344.1 MGP_CASTEiJ_G0022099.1 mouse_genomes_project 16 43307350 43337510 + MGP_CASTEiJ_P0044344 Cd200r1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044345.1 MGP_CASTEiJ_G0022099.1 mouse_genomes_project 16 43307533 43338989 + MGP_CASTEiJ_P0044345 Cd200r1 protein_coding protein_coding MGP_CASTEiJ_T0045212.1 MGP_CASTEiJ_G0022346.1 mouse_genomes_project 16 98871736 98939762 - MGP_CASTEiJ_P0045212 C2cd2 protein_coding protein_coding MGP_CASTEiJ_T0009873.1 MGP_CASTEiJ_G0008061.1 mouse_genomes_project 16 42520421 42520547 + Mir3470b miRNA miRNA MGP_CASTEiJ_T0043058.1 MGP_CASTEiJ_G0021802.1 mouse_genomes_project 16 11157562 11191275 + MGP_CASTEiJ_P0043058 Nde1 protein_coding protein_coding MGP_CASTEiJ_T0043059.1 MGP_CASTEiJ_G0021802.1 mouse_genomes_project 16 11157574 11191175 + MGP_CASTEiJ_P0043059 Nde1 protein_coding protein_coding MGP_CASTEiJ_T0043060.1 MGP_CASTEiJ_G0021802.1 mouse_genomes_project 16 11157585 11191265 + MGP_CASTEiJ_P0043060 Nde1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043061.1 MGP_CASTEiJ_G0021802.1 mouse_genomes_project 16 11157591 11165862 + Nde1 protein_coding retained_intron MGP_CASTEiJ_T0043062.1 MGP_CASTEiJ_G0021802.1 mouse_genomes_project 16 11157632 11191265 + MGP_CASTEiJ_P0043062 Nde1 protein_coding protein_coding MGP_CASTEiJ_T0043063.1 MGP_CASTEiJ_G0021802.1 mouse_genomes_project 16 11157636 11188791 + Nde1 protein_coding processed_transcript MGP_CASTEiJ_T0043064.1 MGP_CASTEiJ_G0021802.1 mouse_genomes_project 16 11171819 11187060 + Nde1 protein_coding retained_intron MGP_CASTEiJ_T0043065.1 MGP_CASTEiJ_G0021802.1 mouse_genomes_project 16 11182245 11188871 + MGP_CASTEiJ_P0043065 Nde1 protein_coding protein_coding MGP_CASTEiJ_T0043200.1 MGP_CASTEiJ_G0021834.1 mouse_genomes_project 16 14240187 14273911 + MGP_CASTEiJ_P0043200 Hic2 protein_coding protein_coding MGP_CASTEiJ_T0043201.1 MGP_CASTEiJ_G0021834.1 mouse_genomes_project 16 14240279 14272072 + MGP_CASTEiJ_P0043201 Hic2 protein_coding protein_coding MGP_CASTEiJ_T0042808.1 MGP_CASTEiJ_G0021737.1 mouse_genomes_project 16 1492344 1515749 - MGP_CASTEiJ_P0042808 Anks3 protein_coding protein_coding MGP_CASTEiJ_T0006688.1 MGP_CASTEiJ_G0005529.1 mouse_genomes_project 16 58493510 58499824 - 1700022E09Rik lincRNA lincRNA MGP_CASTEiJ_T0006689.1 MGP_CASTEiJ_G0005529.1 mouse_genomes_project 16 58497620 58499858 - 1700022E09Rik lincRNA lincRNA MGP_CASTEiJ_T0044202.1 MGP_CASTEiJ_G0022070.1 mouse_genomes_project 16 36683390 36718330 - MGP_CASTEiJ_P0044202 Pla1a protein_coding protein_coding MGP_CASTEiJ_T0044081.1 MGP_CASTEiJ_G0022039.1 mouse_genomes_project 16 34321595 34333323 - MGP_CASTEiJ_P0044081 Csta1 protein_coding protein_coding MGP_CASTEiJ_T0044082.1 MGP_CASTEiJ_G0022039.1 mouse_genomes_project 16 34323821 34333287 - MGP_CASTEiJ_P0044082 Csta1 protein_coding protein_coding MGP_CASTEiJ_T0003560.1 MGP_CASTEiJ_G0003228.1 mouse_genomes_project 16 36585050 36587453 + Maats1os antisense antisense MGP_CASTEiJ_T0044581.1 MGP_CASTEiJ_G0022164.1 mouse_genomes_project 16 57730381 57736696 + MGP_CASTEiJ_P0044581 Cldnd1 protein_coding protein_coding MGP_CASTEiJ_T0044582.1 MGP_CASTEiJ_G0022164.1 mouse_genomes_project 16 57730396 57736054 + MGP_CASTEiJ_P0044582 Cldnd1 protein_coding protein_coding MGP_CASTEiJ_T0044583.1 MGP_CASTEiJ_G0022164.1 mouse_genomes_project 16 57730494 57735435 + MGP_CASTEiJ_P0044583 Cldnd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044584.1 MGP_CASTEiJ_G0022164.1 mouse_genomes_project 16 57730510 57735354 + Cldnd1 protein_coding processed_transcript MGP_CASTEiJ_T0044585.1 MGP_CASTEiJ_G0022164.1 mouse_genomes_project 16 57730519 57733852 + MGP_CASTEiJ_P0044585 Cldnd1 protein_coding protein_coding MGP_CASTEiJ_T0044586.1 MGP_CASTEiJ_G0022164.1 mouse_genomes_project 16 57734699 57735426 + Cldnd1 protein_coding retained_intron MGP_CASTEiJ_T0043600.1 MGP_CASTEiJ_G0021915.1 mouse_genomes_project 16 17991295 17996105 + MGP_CASTEiJ_P0043600 Polr2h protein_coding protein_coding MGP_CASTEiJ_T0043601.1 MGP_CASTEiJ_G0021915.1 mouse_genomes_project 16 17991801 17995849 + Polr2h protein_coding processed_transcript MGP_CASTEiJ_T0043194.1 MGP_CASTEiJ_G0021832.1 mouse_genomes_project 16 14153169 14207405 - MGP_CASTEiJ_P0043194 Ube2l3 protein_coding protein_coding MGP_CASTEiJ_T0043195.1 MGP_CASTEiJ_G0021832.1 mouse_genomes_project 16 14153171 14207264 - MGP_CASTEiJ_P0043195 Ube2l3 protein_coding protein_coding MGP_CASTEiJ_T0043196.1 MGP_CASTEiJ_G0021832.1 mouse_genomes_project 16 14153474 14162340 - Ube2l3 protein_coding processed_transcript MGP_CASTEiJ_T0043197.1 MGP_CASTEiJ_G0021832.1 mouse_genomes_project 16 14154465 14207266 - MGP_CASTEiJ_P0043197 Ube2l3 protein_coding protein_coding MGP_CASTEiJ_T0043198.1 MGP_CASTEiJ_G0021832.1 mouse_genomes_project 16 14159572 14207245 - Ube2l3 protein_coding retained_intron MGP_CASTEiJ_T0044557.1 MGP_CASTEiJ_G0022158.1 mouse_genomes_project 16 57396131 57456177 + MGP_CASTEiJ_P0044557 Dcbld2 protein_coding protein_coding MGP_CASTEiJ_T0044558.1 MGP_CASTEiJ_G0022158.1 mouse_genomes_project 16 57396381 57458490 + MGP_CASTEiJ_P0044558 Dcbld2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044559.1 MGP_CASTEiJ_G0022158.1 mouse_genomes_project 16 57441729 57451840 + Dcbld2 protein_coding processed_transcript MGP_CASTEiJ_T0044560.1 MGP_CASTEiJ_G0022158.1 mouse_genomes_project 16 57442395 57443116 + Dcbld2 protein_coding processed_transcript MGP_CASTEiJ_T0044561.1 MGP_CASTEiJ_G0022158.1 mouse_genomes_project 16 57442947 57450285 + Dcbld2 protein_coding retained_intron MGP_CASTEiJ_T0044562.1 MGP_CASTEiJ_G0022158.1 mouse_genomes_project 16 57446752 57452289 + Dcbld2 protein_coding processed_transcript MGP_CASTEiJ_T0044563.1 MGP_CASTEiJ_G0022158.1 mouse_genomes_project 16 57446796 57453184 + Dcbld2 protein_coding retained_intron MGP_CASTEiJ_T0044564.1 MGP_CASTEiJ_G0022158.1 mouse_genomes_project 16 57446798 57453247 + Dcbld2 protein_coding retained_intron MGP_CASTEiJ_T0012816.1 MGP_CASTEiJ_G0010979.1 mouse_genomes_project 16 75518741 75519644 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0042819.1 MGP_CASTEiJ_G0021741.1 mouse_genomes_project 16 1564964 1569773 - MGP_CASTEiJ_P0042819 Rogdi protein_coding protein_coding MGP_CASTEiJ_T0042820.1 MGP_CASTEiJ_G0021741.1 mouse_genomes_project 16 1564964 1569783 - MGP_CASTEiJ_P0042820 Rogdi protein_coding protein_coding MGP_CASTEiJ_T0042821.1 MGP_CASTEiJ_G0021741.1 mouse_genomes_project 16 1564989 1569773 - MGP_CASTEiJ_P0042821 Rogdi protein_coding protein_coding MGP_CASTEiJ_T0042822.1 MGP_CASTEiJ_G0021741.1 mouse_genomes_project 16 1565220 1566930 - Rogdi protein_coding retained_intron MGP_CASTEiJ_T0042823.1 MGP_CASTEiJ_G0021741.1 mouse_genomes_project 16 1565459 1566387 - Rogdi protein_coding retained_intron MGP_CASTEiJ_T0042824.1 MGP_CASTEiJ_G0021741.1 mouse_genomes_project 16 1566176 1568085 - Rogdi protein_coding retained_intron MGP_CASTEiJ_T0042825.1 MGP_CASTEiJ_G0021741.1 mouse_genomes_project 16 1566313 1568005 - Rogdi protein_coding retained_intron MGP_CASTEiJ_T0042826.1 MGP_CASTEiJ_G0021741.1 mouse_genomes_project 16 1567124 1569741 - MGP_CASTEiJ_P0042826 Rogdi protein_coding protein_coding MGP_CASTEiJ_T0042827.1 MGP_CASTEiJ_G0021741.1 mouse_genomes_project 16 1567972 1569809 - Rogdi protein_coding retained_intron MGP_CASTEiJ_T0042828.1 MGP_CASTEiJ_G0021741.1 mouse_genomes_project 16 1568425 1569792 - Rogdi protein_coding retained_intron MGP_CASTEiJ_T0042909.1 MGP_CASTEiJ_G0021766.1 mouse_genomes_project 16 7215854 7228393 + MGP_CASTEiJ_P0042909 Nubp1 protein_coding protein_coding MGP_CASTEiJ_T0042910.1 MGP_CASTEiJ_G0021766.1 mouse_genomes_project 16 7215855 7225596 + Nubp1 protein_coding processed_transcript MGP_CASTEiJ_T0042911.1 MGP_CASTEiJ_G0021766.1 mouse_genomes_project 16 7215860 7224475 + Nubp1 protein_coding retained_intron MGP_CASTEiJ_T0042912.1 MGP_CASTEiJ_G0021766.1 mouse_genomes_project 16 7215876 7228393 + Nubp1 protein_coding retained_intron MGP_CASTEiJ_T0042913.1 MGP_CASTEiJ_G0021766.1 mouse_genomes_project 16 7215970 7225361 + Nubp1 protein_coding retained_intron MGP_CASTEiJ_T0042915.1 MGP_CASTEiJ_G0021766.1 mouse_genomes_project 16 7225159 7227312 + Nubp1 protein_coding processed_transcript MGP_CASTEiJ_T0009886.1 MGP_CASTEiJ_G0008074.1 mouse_genomes_project 16 77392117 77392182 + Mir99a miRNA miRNA MGP_CASTEiJ_T0016746.1 MGP_CASTEiJ_G0014629.1 mouse_genomes_project 16 20679800 20739576 + B630019A10Rik processed_transcript processed_transcript MGP_CASTEiJ_T0099484.1 MGP_CASTEiJ_G0036397.1 mouse_genomes_project 16 18017929 18018102 + Gm22741 snRNA snRNA MGP_CASTEiJ_T0043226.1 MGP_CASTEiJ_G0021837.1 mouse_genomes_project 16 14349508 14362040 + MGP_CASTEiJ_P0043226 Serpind1 protein_coding protein_coding MGP_CASTEiJ_T0043227.1 MGP_CASTEiJ_G0021837.1 mouse_genomes_project 16 14349520 14362039 + MGP_CASTEiJ_P0043227 Serpind1 protein_coding protein_coding MGP_CASTEiJ_T0044683.1 MGP_CASTEiJ_G0022205.1 mouse_genomes_project 16 72269729 72674524 + MGP_CASTEiJ_P0044683 Robo1 protein_coding protein_coding MGP_CASTEiJ_T0044684.1 MGP_CASTEiJ_G0022205.1 mouse_genomes_project 16 72519531 72700469 + MGP_CASTEiJ_P0044684 Robo1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045194.1 MGP_CASTEiJ_G0022342.1 mouse_genomes_project 16 98473172 98478393 - Fam3b protein_coding processed_transcript MGP_CASTEiJ_T0045195.1 MGP_CASTEiJ_G0022342.1 mouse_genomes_project 16 98473206 98506201 - MGP_CASTEiJ_P0045195 Fam3b protein_coding protein_coding MGP_CASTEiJ_T0012784.1 MGP_CASTEiJ_G0010947.1 mouse_genomes_project 16 30350656 30351104 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044616.1 MGP_CASTEiJ_G0022183.1 mouse_genomes_project 16 58372470 58373475 - MGP_CASTEiJ_P0044616 Olfr206 protein_coding protein_coding MGP_CASTEiJ_T0044614.1 MGP_CASTEiJ_G0022181.1 mouse_genomes_project 16 58301423 58302350 - MGP_CASTEiJ_P0044614 protein_coding protein_coding MGP_CASTEiJ_T0012812.1 MGP_CASTEiJ_G0010975.1 mouse_genomes_project 16 64143293 64145068 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0043976.1 MGP_CASTEiJ_G0022011.1 mouse_genomes_project 16 31046442 31050182 + MGP_CASTEiJ_P0043976 Rpl35a protein_coding protein_coding MGP_CASTEiJ_T0043977.1 MGP_CASTEiJ_G0022011.1 mouse_genomes_project 16 31046455 31050169 + MGP_CASTEiJ_P0043977 Rpl35a protein_coding protein_coding MGP_CASTEiJ_T0043978.1 MGP_CASTEiJ_G0022011.1 mouse_genomes_project 16 31046471 31050168 + Rpl35a protein_coding retained_intron MGP_CASTEiJ_T0043979.1 MGP_CASTEiJ_G0022011.1 mouse_genomes_project 16 31046513 31047520 + Rpl35a protein_coding retained_intron MGP_CASTEiJ_T0043980.1 MGP_CASTEiJ_G0022011.1 mouse_genomes_project 16 31046516 31050157 + MGP_CASTEiJ_P0043980 Rpl35a protein_coding protein_coding MGP_CASTEiJ_T0043981.1 MGP_CASTEiJ_G0022011.1 mouse_genomes_project 16 31046795 31050168 + MGP_CASTEiJ_P0043981 Rpl35a protein_coding protein_coding MGP_CASTEiJ_T0043982.1 MGP_CASTEiJ_G0022011.1 mouse_genomes_project 16 31047007 31050148 + MGP_CASTEiJ_P0043982 Rpl35a protein_coding protein_coding MGP_CASTEiJ_T0100732.1 MGP_CASTEiJ_G0037645.1 mouse_genomes_project 16 55027668 55027803 - Gm22422 snoRNA snoRNA MGP_CASTEiJ_T0100737.1 MGP_CASTEiJ_G0037650.1 mouse_genomes_project 16 67885120 67885240 - Gm24681 snoRNA snoRNA MGP_CASTEiJ_T0045107.1 MGP_CASTEiJ_G0022324.1 mouse_genomes_project 16 95572714 95845884 - MGP_CASTEiJ_P0045107 Kcnj6 protein_coding protein_coding MGP_CASTEiJ_T0045108.1 MGP_CASTEiJ_G0022324.1 mouse_genomes_project 16 95586114 95845884 - MGP_CASTEiJ_P0045108 Kcnj6 protein_coding protein_coding MGP_CASTEiJ_T0045109.1 MGP_CASTEiJ_G0022324.1 mouse_genomes_project 16 95653842 95688920 - MGP_CASTEiJ_P0045109 Kcnj6 protein_coding protein_coding MGP_CASTEiJ_T0100738.1 MGP_CASTEiJ_G0037651.1 mouse_genomes_project 16 71199696 71199827 + Gm22797 snoRNA snoRNA MGP_CASTEiJ_T0098847.1 MGP_CASTEiJ_G0035773.1 mouse_genomes_project 16 23712420 23722390 - AU015336 sense_intronic sense_intronic MGP_CASTEiJ_T0045128.1 MGP_CASTEiJ_G0022327.1 mouse_genomes_project 16 96595420 96615413 + MGP_CASTEiJ_P0045128 Ets2 protein_coding protein_coding MGP_CASTEiJ_T0045129.1 MGP_CASTEiJ_G0022327.1 mouse_genomes_project 16 96595800 96603666 + Ets2 protein_coding retained_intron MGP_CASTEiJ_T0045130.1 MGP_CASTEiJ_G0022327.1 mouse_genomes_project 16 96595845 96606052 + Ets2 protein_coding retained_intron MGP_CASTEiJ_T0045131.1 MGP_CASTEiJ_G0022327.1 mouse_genomes_project 16 96599655 96610439 + MGP_CASTEiJ_P0045131 Ets2 protein_coding protein_coding MGP_CASTEiJ_T0045132.1 MGP_CASTEiJ_G0022327.1 mouse_genomes_project 16 96610220 96613481 + Ets2 protein_coding retained_intron MGP_CASTEiJ_T0099502.1 MGP_CASTEiJ_G0036415.1 mouse_genomes_project 16 47608663 47608767 - Gm22576 snRNA snRNA MGP_CASTEiJ_T0043378.1 MGP_CASTEiJ_G0021869.1 mouse_genomes_project 16 15430458 15495582 + MGP_CASTEiJ_P0043378 Arvcf protein_coding protein_coding MGP_CASTEiJ_T0043379.1 MGP_CASTEiJ_G0021869.1 mouse_genomes_project 16 15430546 15495578 + MGP_CASTEiJ_P0043379 Arvcf protein_coding protein_coding MGP_CASTEiJ_T0043380.1 MGP_CASTEiJ_G0021869.1 mouse_genomes_project 16 15430546 15495582 + MGP_CASTEiJ_P0043380 Arvcf protein_coding protein_coding MGP_CASTEiJ_T0043381.1 MGP_CASTEiJ_G0021869.1 mouse_genomes_project 16 15466248 15495249 + MGP_CASTEiJ_P0043381 Arvcf protein_coding protein_coding MGP_CASTEiJ_T0043382.1 MGP_CASTEiJ_G0021869.1 mouse_genomes_project 16 15478067 15495582 + MGP_CASTEiJ_P0043382 Arvcf protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043383.1 MGP_CASTEiJ_G0021869.1 mouse_genomes_project 16 15478068 15494758 + MGP_CASTEiJ_P0043383 Arvcf protein_coding protein_coding MGP_CASTEiJ_T0043384.1 MGP_CASTEiJ_G0021869.1 mouse_genomes_project 16 15485345 15487512 + Arvcf protein_coding processed_transcript MGP_CASTEiJ_T0043385.1 MGP_CASTEiJ_G0021869.1 mouse_genomes_project 16 15487595 15489149 + Arvcf protein_coding retained_intron MGP_CASTEiJ_T0043386.1 MGP_CASTEiJ_G0021869.1 mouse_genomes_project 16 15489637 15491937 + Arvcf protein_coding processed_transcript MGP_CASTEiJ_T0043387.1 MGP_CASTEiJ_G0021869.1 mouse_genomes_project 16 15491954 15492964 + Arvcf protein_coding retained_intron MGP_CASTEiJ_T0042722.1 MGP_CASTEiJ_G0021719.1 mouse_genomes_project 16 504739 507054 + MGP_CASTEiJ_P0042722 Dnase1 protein_coding protein_coding MGP_CASTEiJ_T0042723.1 MGP_CASTEiJ_G0021719.1 mouse_genomes_project 16 504767 507822 + MGP_CASTEiJ_P0042723 Dnase1 protein_coding protein_coding MGP_CASTEiJ_T0042724.1 MGP_CASTEiJ_G0021719.1 mouse_genomes_project 16 504770 505819 + MGP_CASTEiJ_P0042724 Dnase1 protein_coding protein_coding MGP_CASTEiJ_T0042725.1 MGP_CASTEiJ_G0021719.1 mouse_genomes_project 16 504828 507822 + MGP_CASTEiJ_P0042725 Dnase1 protein_coding protein_coding MGP_CASTEiJ_T0042726.1 MGP_CASTEiJ_G0021719.1 mouse_genomes_project 16 504895 507821 + Dnase1 protein_coding retained_intron MGP_CASTEiJ_T0042727.1 MGP_CASTEiJ_G0021719.1 mouse_genomes_project 16 504898 507822 + Dnase1 protein_coding retained_intron MGP_CASTEiJ_T0042728.1 MGP_CASTEiJ_G0021719.1 mouse_genomes_project 16 504952 507673 + MGP_CASTEiJ_P0042728 Dnase1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042729.1 MGP_CASTEiJ_G0021719.1 mouse_genomes_project 16 505073 506058 + Dnase1 protein_coding retained_intron MGP_CASTEiJ_T0042730.1 MGP_CASTEiJ_G0021719.1 mouse_genomes_project 16 505101 507137 + Dnase1 protein_coding retained_intron MGP_CASTEiJ_T0042731.1 MGP_CASTEiJ_G0021719.1 mouse_genomes_project 16 506019 506669 + Dnase1 protein_coding retained_intron MGP_CASTEiJ_T0042732.1 MGP_CASTEiJ_G0021719.1 mouse_genomes_project 16 506927 507822 + MGP_CASTEiJ_P0042732 Dnase1 protein_coding protein_coding MGP_CASTEiJ_T0044119.1 MGP_CASTEiJ_G0022050.1 mouse_genomes_project 16 35026492 35029966 + Iqcb1 protein_coding processed_transcript MGP_CASTEiJ_T0044120.1 MGP_CASTEiJ_G0022050.1 mouse_genomes_project 16 35026514 35074688 + MGP_CASTEiJ_P0044120 Iqcb1 protein_coding protein_coding MGP_CASTEiJ_T0044121.1 MGP_CASTEiJ_G0022050.1 mouse_genomes_project 16 35026515 35074680 + MGP_CASTEiJ_P0044121 Iqcb1 protein_coding protein_coding MGP_CASTEiJ_T0044122.1 MGP_CASTEiJ_G0022050.1 mouse_genomes_project 16 35026538 35061073 + MGP_CASTEiJ_P0044122 Iqcb1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044123.1 MGP_CASTEiJ_G0022050.1 mouse_genomes_project 16 35047075 35052029 + Iqcb1 protein_coding retained_intron MGP_CASTEiJ_T0044124.1 MGP_CASTEiJ_G0022050.1 mouse_genomes_project 16 35047439 35052035 + Iqcb1 protein_coding processed_transcript MGP_CASTEiJ_T0044125.1 MGP_CASTEiJ_G0022050.1 mouse_genomes_project 16 35051908 35061070 + Iqcb1 protein_coding processed_transcript MGP_CASTEiJ_T0044126.1 MGP_CASTEiJ_G0022050.1 mouse_genomes_project 16 35053104 35057934 + Iqcb1 protein_coding processed_transcript MGP_CASTEiJ_T0044230.1 MGP_CASTEiJ_G0022077.1 mouse_genomes_project 16 37040723 37071824 + MGP_CASTEiJ_P0044230 B4galt4 protein_coding protein_coding MGP_CASTEiJ_T0044231.1 MGP_CASTEiJ_G0022077.1 mouse_genomes_project 16 37040760 37072642 + MGP_CASTEiJ_P0044231 B4galt4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044232.1 MGP_CASTEiJ_G0022077.1 mouse_genomes_project 16 37064607 37072105 + MGP_CASTEiJ_P0044232 B4galt4 protein_coding protein_coding MGP_CASTEiJ_T0044233.1 MGP_CASTEiJ_G0022077.1 mouse_genomes_project 16 37066688 37070072 + B4galt4 protein_coding retained_intron MGP_CASTEiJ_T0043812.1 MGP_CASTEiJ_G0021975.1 mouse_genomes_project 16 28434169 28438678 + MGP_CASTEiJ_P0043812 Fam43a protein_coding protein_coding MGP_CASTEiJ_T0100703.1 MGP_CASTEiJ_G0037616.1 mouse_genomes_project 16 10453661 10453785 - Gm25276 snoRNA snoRNA MGP_CASTEiJ_T0011080.1 MGP_CASTEiJ_G0009268.1 mouse_genomes_project 16 39698101 39698264 - Gm27587 misc_RNA misc_RNA MGP_CASTEiJ_T0043392.1 MGP_CASTEiJ_G0021871.1 mouse_genomes_project 16 15520379 15576302 + MGP_CASTEiJ_P0043392 Txnrd2 protein_coding protein_coding MGP_CASTEiJ_T0043393.1 MGP_CASTEiJ_G0021871.1 mouse_genomes_project 16 15520412 15576305 + MGP_CASTEiJ_P0043393 Txnrd2 protein_coding protein_coding MGP_CASTEiJ_T0043394.1 MGP_CASTEiJ_G0021871.1 mouse_genomes_project 16 15520412 15576308 + MGP_CASTEiJ_P0043394 Txnrd2 protein_coding protein_coding MGP_CASTEiJ_T0043395.1 MGP_CASTEiJ_G0021871.1 mouse_genomes_project 16 15520433 15552940 + MGP_CASTEiJ_P0043395 Txnrd2 protein_coding protein_coding MGP_CASTEiJ_T0043396.1 MGP_CASTEiJ_G0021871.1 mouse_genomes_project 16 15520433 15576302 + MGP_CASTEiJ_P0043396 Txnrd2 protein_coding protein_coding MGP_CASTEiJ_T0043397.1 MGP_CASTEiJ_G0021871.1 mouse_genomes_project 16 15520433 15576302 + MGP_CASTEiJ_P0043397 Txnrd2 protein_coding protein_coding MGP_CASTEiJ_T0043398.1 MGP_CASTEiJ_G0021871.1 mouse_genomes_project 16 15520436 15576306 + MGP_CASTEiJ_P0043398 Txnrd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043399.1 MGP_CASTEiJ_G0021871.1 mouse_genomes_project 16 15520440 15576305 + MGP_CASTEiJ_P0043399 Txnrd2 protein_coding protein_coding MGP_CASTEiJ_T0043400.1 MGP_CASTEiJ_G0021871.1 mouse_genomes_project 16 15520457 15533513 + MGP_CASTEiJ_P0043400 Txnrd2 protein_coding protein_coding MGP_CASTEiJ_T0043401.1 MGP_CASTEiJ_G0021871.1 mouse_genomes_project 16 15522675 15533511 + MGP_CASTEiJ_P0043401 Txnrd2 protein_coding protein_coding MGP_CASTEiJ_T0043402.1 MGP_CASTEiJ_G0021871.1 mouse_genomes_project 16 15522903 15539625 + MGP_CASTEiJ_P0043402 Txnrd2 protein_coding protein_coding MGP_CASTEiJ_T0043403.1 MGP_CASTEiJ_G0021871.1 mouse_genomes_project 16 15537197 15538846 + MGP_CASTEiJ_P0043403 Txnrd2 protein_coding protein_coding MGP_CASTEiJ_T0043404.1 MGP_CASTEiJ_G0021871.1 mouse_genomes_project 16 15548506 15571109 + Txnrd2 protein_coding processed_transcript MGP_CASTEiJ_T0043405.1 MGP_CASTEiJ_G0021871.1 mouse_genomes_project 16 15548512 15571155 + Txnrd2 protein_coding processed_transcript MGP_CASTEiJ_T0043406.1 MGP_CASTEiJ_G0021871.1 mouse_genomes_project 16 15568160 15571118 + Txnrd2 protein_coding processed_transcript MGP_CASTEiJ_T0043407.1 MGP_CASTEiJ_G0021871.1 mouse_genomes_project 16 15568190 15571107 + Txnrd2 protein_coding processed_transcript MGP_CASTEiJ_T0044731.1 MGP_CASTEiJ_G0022221.1 mouse_genomes_project 16 84823318 84844338 - MGP_CASTEiJ_P0044731 Mrpl39 protein_coding protein_coding MGP_CASTEiJ_T0044732.1 MGP_CASTEiJ_G0022221.1 mouse_genomes_project 16 84842763 84843829 - Mrpl39 protein_coding processed_transcript MGP_CASTEiJ_T0003531.1 MGP_CASTEiJ_G0003205.1 mouse_genomes_project 16 1564620 1569674 + Gm42477 antisense antisense MGP_CASTEiJ_T0009842.1 MGP_CASTEiJ_G0008030.1 mouse_genomes_project 16 10373422 10373501 + Mir193b miRNA miRNA MGP_CASTEiJ_T0044138.1 MGP_CASTEiJ_G0022053.1 mouse_genomes_project 16 35171578 35192380 - MGP_CASTEiJ_P0044138 Fbxo40 protein_coding protein_coding MGP_CASTEiJ_T0044139.1 MGP_CASTEiJ_G0022053.1 mouse_genomes_project 16 35174049 35181013 - Fbxo40 protein_coding processed_transcript MGP_CASTEiJ_T0044140.1 MGP_CASTEiJ_G0022053.1 mouse_genomes_project 16 35174158 35178899 - Fbxo40 protein_coding retained_intron MGP_CASTEiJ_T0044141.1 MGP_CASTEiJ_G0022053.1 mouse_genomes_project 16 35174191 35181373 - MGP_CASTEiJ_P0044141 Fbxo40 protein_coding protein_coding MGP_CASTEiJ_T0000017.1 MGP_CASTEiJ_G0000012.1 mouse_genomes_project 16 16378407 16378861 - MGP_CASTEiJ_P0000017 Iglc1 IG_C_gene IG_C_gene MGP_CASTEiJ_T0003549.1 MGP_CASTEiJ_G0003221.1 mouse_genomes_project 16 31836713 31854951 - Gm15658 antisense antisense MGP_CASTEiJ_T0009846.1 MGP_CASTEiJ_G0008034.1 mouse_genomes_project 16 11118343 11118409 - Gm27671 miRNA miRNA MGP_CASTEiJ_T0044715.1 MGP_CASTEiJ_G0022213.1 mouse_genomes_project 16 77381125 77395336 - MGP_CASTEiJ_P0044715 Gm11146 protein_coding protein_coding MGP_CASTEiJ_T0006692.1 MGP_CASTEiJ_G0005532.1 mouse_genomes_project 16 76755866 76768311 - lincRNA lincRNA MGP_CASTEiJ_T0006693.1 MGP_CASTEiJ_G0005532.1 mouse_genomes_project 16 76760124 76768317 - lincRNA lincRNA MGP_CASTEiJ_T0045007.1 MGP_CASTEiJ_G0022304.1 mouse_genomes_project 16 92853249 92864858 + MGP_CASTEiJ_P0045007 Smim11 protein_coding protein_coding MGP_CASTEiJ_T0045008.1 MGP_CASTEiJ_G0022304.1 mouse_genomes_project 16 92853259 92863241 + MGP_CASTEiJ_P0045008 Smim11 protein_coding protein_coding MGP_CASTEiJ_T0012807.1 MGP_CASTEiJ_G0010970.1 mouse_genomes_project 16 55928101 55929044 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012779.1 MGP_CASTEiJ_G0010942.1 mouse_genomes_project 16 25035689 25036475 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009836.1 MGP_CASTEiJ_G0008024.1 mouse_genomes_project 16 1782764 1782850 - Mir6364 miRNA miRNA MGP_CASTEiJ_T0102100.1 MGP_CASTEiJ_G0038825.1 mouse_genomes_project 16 13630114 13630235 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0043082.1 MGP_CASTEiJ_G0021807.1 mouse_genomes_project 16 11587055 11645919 + MGP_CASTEiJ_P0043082 A630010A05Rik protein_coding protein_coding MGP_CASTEiJ_T0043083.1 MGP_CASTEiJ_G0021807.1 mouse_genomes_project 16 11604756 11645941 + MGP_CASTEiJ_P0043083 A630010A05Rik protein_coding protein_coding MGP_CASTEiJ_T0043084.1 MGP_CASTEiJ_G0021807.1 mouse_genomes_project 16 11611155 11645927 + MGP_CASTEiJ_P0043084 A630010A05Rik protein_coding protein_coding MGP_CASTEiJ_T0100743.1 MGP_CASTEiJ_G0037656.1 mouse_genomes_project 16 78245787 78245917 - Gm25038 snoRNA snoRNA MGP_CASTEiJ_T0044822.1 MGP_CASTEiJ_G0022262.1 mouse_genomes_project 16 89375556 89376064 + MGP_CASTEiJ_P0044822 Krtap6-3 protein_coding protein_coding MGP_CASTEiJ_T0044823.1 MGP_CASTEiJ_G0022262.1 mouse_genomes_project 16 89375632 89376064 + MGP_CASTEiJ_P0044823 Krtap6-3 protein_coding protein_coding MGP_CASTEiJ_T0044969.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92233008 92380819 + MGP_CASTEiJ_P0044969 Itsn1 protein_coding protein_coding MGP_CASTEiJ_T0044970.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92233080 92382260 + MGP_CASTEiJ_P0044970 Itsn1 protein_coding protein_coding MGP_CASTEiJ_T0044971.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92233080 92429027 + MGP_CASTEiJ_P0044971 Itsn1 protein_coding protein_coding MGP_CASTEiJ_T0044972.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92233080 92435730 + MGP_CASTEiJ_P0044972 Itsn1 protein_coding protein_coding MGP_CASTEiJ_T0044973.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92233097 92341288 + MGP_CASTEiJ_P0044973 Itsn1 protein_coding protein_coding MGP_CASTEiJ_T0044974.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92233098 92382264 + MGP_CASTEiJ_P0044974 Itsn1 protein_coding protein_coding MGP_CASTEiJ_T0044975.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92233100 92382262 + MGP_CASTEiJ_P0044975 Itsn1 protein_coding protein_coding MGP_CASTEiJ_T0044976.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92233193 92292041 + Itsn1 protein_coding retained_intron MGP_CASTEiJ_T0044977.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92233298 92303709 + Itsn1 protein_coding retained_intron MGP_CASTEiJ_T0044978.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92233319 92381106 + MGP_CASTEiJ_P0044978 Itsn1 protein_coding protein_coding MGP_CASTEiJ_T0044979.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92291823 92328740 + MGP_CASTEiJ_P0044979 Itsn1 protein_coding protein_coding MGP_CASTEiJ_T0044980.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92293766 92337236 + Itsn1 protein_coding processed_transcript MGP_CASTEiJ_T0044981.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92314798 92327102 + Itsn1 protein_coding processed_transcript MGP_CASTEiJ_T0044982.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92314812 92322482 + Itsn1 protein_coding retained_intron MGP_CASTEiJ_T0044983.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92327010 92336806 + Itsn1 protein_coding processed_transcript MGP_CASTEiJ_T0044984.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92336445 92337199 + Itsn1 protein_coding retained_intron MGP_CASTEiJ_T0044985.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92348578 92360207 + Itsn1 protein_coding retained_intron MGP_CASTEiJ_T0044986.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92348667 92362137 + MGP_CASTEiJ_P0044986 Itsn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044987.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92351502 92362137 + MGP_CASTEiJ_P0044987 Itsn1 protein_coding protein_coding MGP_CASTEiJ_T0044988.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92362707 92372218 + MGP_CASTEiJ_P0044988 Itsn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044989.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92370938 92381956 + Itsn1 protein_coding retained_intron MGP_CASTEiJ_T0044990.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92388155 92407213 + Itsn1 protein_coding processed_transcript MGP_CASTEiJ_T0044991.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92398889 92424250 + MGP_CASTEiJ_P0044991 Itsn1 protein_coding protein_coding MGP_CASTEiJ_T0044992.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92412864 92424273 + MGP_CASTEiJ_P0044992 Itsn1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044993.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92412866 92424250 + MGP_CASTEiJ_P0044993 Itsn1 protein_coding protein_coding MGP_CASTEiJ_T0044994.1 MGP_CASTEiJ_G0022300.1 mouse_genomes_project 16 92426971 92430200 + Itsn1 protein_coding processed_transcript MGP_CASTEiJ_T0043972.1 MGP_CASTEiJ_G0022010.1 mouse_genomes_project 16 30999128 31046179 - MGP_CASTEiJ_P0043972 Iqcg protein_coding protein_coding MGP_CASTEiJ_T0043973.1 MGP_CASTEiJ_G0022010.1 mouse_genomes_project 16 31000675 31008074 - Iqcg protein_coding processed_transcript MGP_CASTEiJ_T0043974.1 MGP_CASTEiJ_G0022010.1 mouse_genomes_project 16 31026152 31046207 - MGP_CASTEiJ_P0043974 Iqcg protein_coding protein_coding MGP_CASTEiJ_T0043975.1 MGP_CASTEiJ_G0022010.1 mouse_genomes_project 16 31036282 31046174 - Iqcg protein_coding retained_intron MGP_CASTEiJ_T0043935.1 MGP_CASTEiJ_G0022005.1 mouse_genomes_project 16 30745272 30768300 - MGP_CASTEiJ_P0043935 Muc20 protein_coding protein_coding MGP_CASTEiJ_T0043938.1 MGP_CASTEiJ_G0022005.1 mouse_genomes_project 16 30753871 30768300 - MGP_CASTEiJ_P0043938 Muc20 protein_coding protein_coding MGP_CASTEiJ_T0043199.1 MGP_CASTEiJ_G0021833.1 mouse_genomes_project 16 14213208 14218993 + MGP_CASTEiJ_P0043199 Rimbp3 protein_coding protein_coding MGP_CASTEiJ_T0012811.1 MGP_CASTEiJ_G0010974.1 mouse_genomes_project 16 60568770 60569281 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044818.1 MGP_CASTEiJ_G0022258.1 mouse_genomes_project 16 89314516 89315021 + MGP_CASTEiJ_P0044818 protein_coding protein_coding MGP_CASTEiJ_T0044863.1 MGP_CASTEiJ_G0022279.1 mouse_genomes_project 16 91187840 91246229 - MGP_CASTEiJ_P0044863 Urb1 protein_coding protein_coding MGP_CASTEiJ_T0044864.1 MGP_CASTEiJ_G0022279.1 mouse_genomes_project 16 91203366 91209123 - Urb1 protein_coding retained_intron MGP_CASTEiJ_T0044865.1 MGP_CASTEiJ_G0022279.1 mouse_genomes_project 16 91219363 91246229 - Urb1 protein_coding retained_intron MGP_CASTEiJ_T0044866.1 MGP_CASTEiJ_G0022279.1 mouse_genomes_project 16 91235532 91246218 - Urb1 protein_coding retained_intron MGP_CASTEiJ_T0044867.1 MGP_CASTEiJ_G0022279.1 mouse_genomes_project 16 91240552 91246250 - Urb1 protein_coding retained_intron MGP_CASTEiJ_T0043085.1 MGP_CASTEiJ_G0021808.1 mouse_genomes_project 16 11705102 11708702 + MGP_CASTEiJ_P0043085 Snai2 protein_coding protein_coding MGP_CASTEiJ_T0100706.1 MGP_CASTEiJ_G0037619.1 mouse_genomes_project 16 16665360 16665492 + Gm25762 snoRNA snoRNA MGP_CASTEiJ_T0042945.1 MGP_CASTEiJ_G0021778.1 mouse_genomes_project 16 7811388 7846485 - MGP_CASTEiJ_P0042945 Litaf protein_coding protein_coding MGP_CASTEiJ_T0042946.1 MGP_CASTEiJ_G0021778.1 mouse_genomes_project 16 7812944 7827476 - MGP_CASTEiJ_P0042946 Litaf protein_coding protein_coding MGP_CASTEiJ_T0042947.1 MGP_CASTEiJ_G0021778.1 mouse_genomes_project 16 7815453 7925284 - MGP_CASTEiJ_P0042947 Litaf protein_coding protein_coding MGP_CASTEiJ_T0042948.1 MGP_CASTEiJ_G0021778.1 mouse_genomes_project 16 7818457 7846435 - Litaf protein_coding retained_intron MGP_CASTEiJ_T0099500.1 MGP_CASTEiJ_G0036413.1 mouse_genomes_project 16 41614148 41614255 + Gm25873 snRNA snRNA MGP_CASTEiJ_T0043728.1 MGP_CASTEiJ_G0021952.1 mouse_genomes_project 16 23634073 23793401 - MGP_CASTEiJ_P0043728 P3h2 protein_coding protein_coding MGP_CASTEiJ_T0043729.1 MGP_CASTEiJ_G0021952.1 mouse_genomes_project 16 23646983 23660162 - P3h2 protein_coding retained_intron MGP_CASTEiJ_T0043730.1 MGP_CASTEiJ_G0021952.1 mouse_genomes_project 16 23660491 23667756 - P3h2 protein_coding processed_transcript MGP_CASTEiJ_T0012773.1 MGP_CASTEiJ_G0010936.1 mouse_genomes_project 16 19643563 19643958 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009870.1 MGP_CASTEiJ_G0008058.1 mouse_genomes_project 16 40758455 40758563 - Mir6540 miRNA miRNA MGP_CASTEiJ_T0099507.1 MGP_CASTEiJ_G0036420.1 mouse_genomes_project 16 61733318 61733422 + Gm24164 snRNA snRNA MGP_CASTEiJ_T0044204.1 MGP_CASTEiJ_G0022072.1 mouse_genomes_project 16 36746131 36779157 + MGP_CASTEiJ_P0044204 Cd80 protein_coding protein_coding MGP_CASTEiJ_T0016790.1 MGP_CASTEiJ_G0014646.1 mouse_genomes_project 16 96945917 96948617 + Gm15342 processed_transcript processed_transcript MGP_CASTEiJ_T0043668.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20611364 20617747 + MGP_CASTEiJ_P0043668 Eif4a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043669.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20611368 20612910 + Eif4a2 protein_coding retained_intron MGP_CASTEiJ_T0043670.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20611368 20616794 + MGP_CASTEiJ_P0043670 Eif4a2 protein_coding protein_coding MGP_CASTEiJ_T0043671.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20611369 20612703 + Eif4a2 protein_coding retained_intron MGP_CASTEiJ_T0043672.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20611369 20612814 + Eif4a2 protein_coding retained_intron MGP_CASTEiJ_T0043673.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20611369 20617557 + MGP_CASTEiJ_P0043673 Eif4a2 protein_coding protein_coding MGP_CASTEiJ_T0043674.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20611369 20617537 + MGP_CASTEiJ_P0043674 Eif4a2 protein_coding protein_coding MGP_CASTEiJ_T0043675.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20611371 20617563 + MGP_CASTEiJ_P0043675 Eif4a2 protein_coding protein_coding MGP_CASTEiJ_T0043676.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20611377 20614772 + Eif4a2 protein_coding retained_intron MGP_CASTEiJ_T0043677.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20611381 20614322 + Eif4a2 protein_coding retained_intron MGP_CASTEiJ_T0043678.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20611383 20613931 + Eif4a2 protein_coding retained_intron MGP_CASTEiJ_T0043679.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20611387 20612783 + Eif4a2 protein_coding retained_intron MGP_CASTEiJ_T0043680.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20611387 20617541 + MGP_CASTEiJ_P0043680 Eif4a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043681.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20611388 20617558 + MGP_CASTEiJ_P0043681 Eif4a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043682.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20611389 20613860 + Eif4a2 protein_coding retained_intron MGP_CASTEiJ_T0043683.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20611527 20614263 + Eif4a2 protein_coding processed_transcript MGP_CASTEiJ_T0043684.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20612192 20613080 + Eif4a2 protein_coding retained_intron MGP_CASTEiJ_T0043685.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20612840 20614179 + Eif4a2 protein_coding retained_intron MGP_CASTEiJ_T0043686.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20613588 20616022 + Eif4a2 protein_coding retained_intron MGP_CASTEiJ_T0043687.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20613657 20614409 + Eif4a2 protein_coding retained_intron MGP_CASTEiJ_T0043688.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20613845 20615239 + Eif4a2 protein_coding retained_intron MGP_CASTEiJ_T0043689.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20614284 20615553 + Eif4a2 protein_coding retained_intron MGP_CASTEiJ_T0043690.1 MGP_CASTEiJ_G0021938.1 mouse_genomes_project 16 20614311 20615946 + Eif4a2 protein_coding retained_intron MGP_CASTEiJ_T0003544.1 MGP_CASTEiJ_G0003217.1 mouse_genomes_project 16 29304142 29304558 - Gm15743 antisense antisense MGP_CASTEiJ_T0003545.1 MGP_CASTEiJ_G0003217.1 mouse_genomes_project 16 29304142 29306043 - Gm15743 antisense antisense MGP_CASTEiJ_T0043430.1 MGP_CASTEiJ_G0021879.1 mouse_genomes_project 16 15936521 15940093 + MGP_CASTEiJ_P0043430 Ufd1l protein_coding protein_coding MGP_CASTEiJ_T0043431.1 MGP_CASTEiJ_G0021879.1 mouse_genomes_project 16 15936566 15958871 + MGP_CASTEiJ_P0043431 Ufd1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043432.1 MGP_CASTEiJ_G0021879.1 mouse_genomes_project 16 15936574 15959817 + MGP_CASTEiJ_P0043432 Ufd1l protein_coding protein_coding MGP_CASTEiJ_T0043433.1 MGP_CASTEiJ_G0021879.1 mouse_genomes_project 16 15937036 15940646 + Ufd1l protein_coding processed_transcript MGP_CASTEiJ_T0043434.1 MGP_CASTEiJ_G0021879.1 mouse_genomes_project 16 15937036 15959822 + MGP_CASTEiJ_P0043434 Ufd1l protein_coding protein_coding MGP_CASTEiJ_T0043435.1 MGP_CASTEiJ_G0021879.1 mouse_genomes_project 16 15937063 15952421 + MGP_CASTEiJ_P0043435 Ufd1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043436.1 MGP_CASTEiJ_G0021879.1 mouse_genomes_project 16 15937098 15949779 + MGP_CASTEiJ_P0043436 Ufd1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043437.1 MGP_CASTEiJ_G0021879.1 mouse_genomes_project 16 15947929 15958815 + Ufd1l protein_coding retained_intron MGP_CASTEiJ_T0043438.1 MGP_CASTEiJ_G0021879.1 mouse_genomes_project 16 15951779 15953179 + MGP_CASTEiJ_P0043438 Ufd1l protein_coding protein_coding MGP_CASTEiJ_T0043439.1 MGP_CASTEiJ_G0021879.1 mouse_genomes_project 16 15951967 15958965 + Ufd1l protein_coding retained_intron MGP_CASTEiJ_T0044541.1 MGP_CASTEiJ_G0022149.1 mouse_genomes_project 16 55818858 55903274 - MGP_CASTEiJ_P0044541 protein_coding protein_coding MGP_CASTEiJ_T0044542.1 MGP_CASTEiJ_G0022149.1 mouse_genomes_project 16 55820188 55963371 - protein_coding processed_transcript MGP_CASTEiJ_T0044543.1 MGP_CASTEiJ_G0022149.1 mouse_genomes_project 16 55835666 55842996 - MGP_CASTEiJ_P0044543 protein_coding protein_coding MGP_CASTEiJ_T0012786.1 MGP_CASTEiJ_G0010949.1 mouse_genomes_project 16 30690529 30691469 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012763.1 MGP_CASTEiJ_G0010926.1 mouse_genomes_project 16 16065311 16065719 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006668.1 MGP_CASTEiJ_G0005514.1 mouse_genomes_project 16 27999380 28005872 - Gm26562 lincRNA lincRNA MGP_CASTEiJ_T0044766.1 MGP_CASTEiJ_G0022232.1 mouse_genomes_project 16 87602562 87632974 + MGP_CASTEiJ_P0044766 protein_coding protein_coding MGP_CASTEiJ_T0044767.1 MGP_CASTEiJ_G0022232.1 mouse_genomes_project 16 87602838 87632779 + MGP_CASTEiJ_P0044767 protein_coding protein_coding MGP_CASTEiJ_T0044768.1 MGP_CASTEiJ_G0022232.1 mouse_genomes_project 16 87602844 87610485 + MGP_CASTEiJ_P0044768 protein_coding protein_coding MGP_CASTEiJ_T0044769.1 MGP_CASTEiJ_G0022232.1 mouse_genomes_project 16 87602886 87610001 + protein_coding retained_intron MGP_CASTEiJ_T0044770.1 MGP_CASTEiJ_G0022232.1 mouse_genomes_project 16 87602902 87619597 + protein_coding retained_intron MGP_CASTEiJ_T0044771.1 MGP_CASTEiJ_G0022232.1 mouse_genomes_project 16 87602908 87614775 + protein_coding processed_transcript MGP_CASTEiJ_T0044772.1 MGP_CASTEiJ_G0022232.1 mouse_genomes_project 16 87602917 87632779 + MGP_CASTEiJ_P0044772 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044773.1 MGP_CASTEiJ_G0022232.1 mouse_genomes_project 16 87621421 87629381 + protein_coding retained_intron MGP_CASTEiJ_T0044774.1 MGP_CASTEiJ_G0022232.1 mouse_genomes_project 16 87621656 87628675 + protein_coding retained_intron MGP_CASTEiJ_T0044775.1 MGP_CASTEiJ_G0022232.1 mouse_genomes_project 16 87630905 87632649 + protein_coding retained_intron MGP_CASTEiJ_T0044828.1 MGP_CASTEiJ_G0022267.1 mouse_genomes_project 16 89494631 89495142 + MGP_CASTEiJ_P0044828 Krtap20-2 protein_coding protein_coding MGP_CASTEiJ_T0043543.1 MGP_CASTEiJ_G0021908.1 mouse_genomes_project 16 17866941 17872251 - MGP_CASTEiJ_P0043543 Alg3 protein_coding protein_coding MGP_CASTEiJ_T0043544.1 MGP_CASTEiJ_G0021908.1 mouse_genomes_project 16 17866962 17872214 - MGP_CASTEiJ_P0043544 Alg3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043545.1 MGP_CASTEiJ_G0021908.1 mouse_genomes_project 16 17866963 17872230 - MGP_CASTEiJ_P0043545 Alg3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043546.1 MGP_CASTEiJ_G0021908.1 mouse_genomes_project 16 17870246 17872235 - Alg3 protein_coding processed_transcript MGP_CASTEiJ_T0043828.1 MGP_CASTEiJ_G0021980.1 mouse_genomes_project 16 29302432 29337254 + MGP_CASTEiJ_P0043828 Bdh1 protein_coding protein_coding MGP_CASTEiJ_T0043829.1 MGP_CASTEiJ_G0021980.1 mouse_genomes_project 16 29305014 29338658 + MGP_CASTEiJ_P0043829 Bdh1 protein_coding protein_coding MGP_CASTEiJ_T0043830.1 MGP_CASTEiJ_G0021980.1 mouse_genomes_project 16 29305018 29319078 + Bdh1 protein_coding retained_intron MGP_CASTEiJ_T0043831.1 MGP_CASTEiJ_G0021980.1 mouse_genomes_project 16 29305565 29336978 + MGP_CASTEiJ_P0043831 Bdh1 protein_coding protein_coding MGP_CASTEiJ_T0043832.1 MGP_CASTEiJ_G0021980.1 mouse_genomes_project 16 29305760 29337164 + MGP_CASTEiJ_P0043832 Bdh1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043833.1 MGP_CASTEiJ_G0021980.1 mouse_genomes_project 16 29317036 29336506 + MGP_CASTEiJ_P0043833 Bdh1 protein_coding protein_coding MGP_CASTEiJ_T0043834.1 MGP_CASTEiJ_G0021980.1 mouse_genomes_project 16 29337872 29338658 + Bdh1 protein_coding processed_transcript MGP_CASTEiJ_T0042949.1 MGP_CASTEiJ_G0021779.1 mouse_genomes_project 16 7925424 7934134 + MGP_CASTEiJ_P0042949 Snn protein_coding protein_coding MGP_CASTEiJ_T0100744.1 MGP_CASTEiJ_G0037657.1 mouse_genomes_project 16 80040787 80040903 + Gm23083 snoRNA snoRNA MGP_CASTEiJ_T0009893.1 MGP_CASTEiJ_G0008081.1 mouse_genomes_project 16 93686345 93686413 + Gm28003 miRNA miRNA MGP_CASTEiJ_T0098348.1 MGP_CASTEiJ_G0035279.1 mouse_genomes_project 16 48613766 48616950 + pseudogene pseudogene MGP_CASTEiJ_T0043424.1 MGP_CASTEiJ_G0021876.1 mouse_genomes_project 16 15737387 15745539 - MGP_CASTEiJ_P0043424 Sept5 protein_coding protein_coding MGP_CASTEiJ_T0045096.1 MGP_CASTEiJ_G0022322.1 mouse_genomes_project 16 95301683 95333659 - MGP_CASTEiJ_P0045096 Dscr3 protein_coding protein_coding MGP_CASTEiJ_T0045097.1 MGP_CASTEiJ_G0022322.1 mouse_genomes_project 16 95306020 95316657 - Dscr3 protein_coding processed_transcript MGP_CASTEiJ_T0045098.1 MGP_CASTEiJ_G0022322.1 mouse_genomes_project 16 95308092 95333254 - Dscr3 protein_coding retained_intron MGP_CASTEiJ_T0045099.1 MGP_CASTEiJ_G0022322.1 mouse_genomes_project 16 95315929 95333263 - Dscr3 protein_coding retained_intron MGP_CASTEiJ_T0045100.1 MGP_CASTEiJ_G0022322.1 mouse_genomes_project 16 95317622 95333239 - Dscr3 protein_coding retained_intron MGP_CASTEiJ_T0016757.1 MGP_CASTEiJ_G0014635.1 mouse_genomes_project 16 58595204 58637705 - Crybg3 processed_transcript processed_transcript MGP_CASTEiJ_T0043447.1 MGP_CASTEiJ_G0021883.1 mouse_genomes_project 16 15994396 16047935 + MGP_CASTEiJ_P0043447 Hira protein_coding protein_coding MGP_CASTEiJ_T0043448.1 MGP_CASTEiJ_G0021883.1 mouse_genomes_project 16 15994425 16094746 + MGP_CASTEiJ_P0043448 Hira protein_coding protein_coding MGP_CASTEiJ_T0043449.1 MGP_CASTEiJ_G0021883.1 mouse_genomes_project 16 15994628 16030684 + Hira protein_coding retained_intron MGP_CASTEiJ_T0043450.1 MGP_CASTEiJ_G0021883.1 mouse_genomes_project 16 15994628 16056143 + MGP_CASTEiJ_P0043450 Hira protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043451.1 MGP_CASTEiJ_G0021883.1 mouse_genomes_project 16 15994770 16036504 + Hira protein_coding retained_intron MGP_CASTEiJ_T0043452.1 MGP_CASTEiJ_G0021883.1 mouse_genomes_project 16 16042984 16045570 + Hira protein_coding processed_transcript MGP_CASTEiJ_T0043453.1 MGP_CASTEiJ_G0021883.1 mouse_genomes_project 16 16045489 16056198 + Hira protein_coding retained_intron MGP_CASTEiJ_T0043454.1 MGP_CASTEiJ_G0021883.1 mouse_genomes_project 16 16054077 16068585 + Hira protein_coding processed_transcript MGP_CASTEiJ_T0009869.1 MGP_CASTEiJ_G0008057.1 mouse_genomes_project 16 39613429 39613489 + miRNA miRNA MGP_CASTEiJ_T0100750.1 MGP_CASTEiJ_G0037663.1 mouse_genomes_project 16 87944674 87944762 - Gm23994 snoRNA snoRNA MGP_CASTEiJ_T0042985.1 MGP_CASTEiJ_G0021784.1 mouse_genomes_project 16 8194626 8200894 + MGP_CASTEiJ_P0042985 Tnfrsf17 protein_coding protein_coding MGP_CASTEiJ_T0044619.1 MGP_CASTEiJ_G0022186.1 mouse_genomes_project 16 58502392 58523104 + MGP_CASTEiJ_P0044619 Mina protein_coding protein_coding MGP_CASTEiJ_T0044620.1 MGP_CASTEiJ_G0022186.1 mouse_genomes_project 16 58502440 58508202 + MGP_CASTEiJ_P0044620 Mina protein_coding protein_coding MGP_CASTEiJ_T0044621.1 MGP_CASTEiJ_G0022186.1 mouse_genomes_project 16 58502458 58522308 + MGP_CASTEiJ_P0044621 Mina protein_coding protein_coding MGP_CASTEiJ_T0044622.1 MGP_CASTEiJ_G0022186.1 mouse_genomes_project 16 58502704 58522930 + MGP_CASTEiJ_P0044622 Mina protein_coding protein_coding MGP_CASTEiJ_T0044623.1 MGP_CASTEiJ_G0022186.1 mouse_genomes_project 16 58502971 58506396 + MGP_CASTEiJ_P0044623 Mina protein_coding protein_coding MGP_CASTEiJ_T0044624.1 MGP_CASTEiJ_G0022186.1 mouse_genomes_project 16 58518186 58520473 + Mina protein_coding retained_intron MGP_CASTEiJ_T0043497.1 MGP_CASTEiJ_G0021902.1 mouse_genomes_project 16 17581480 17680095 - MGP_CASTEiJ_P0043497 Abcc5 protein_coding protein_coding MGP_CASTEiJ_T0043498.1 MGP_CASTEiJ_G0021902.1 mouse_genomes_project 16 17581483 17680036 - MGP_CASTEiJ_P0043498 Abcc5 protein_coding protein_coding MGP_CASTEiJ_T0043499.1 MGP_CASTEiJ_G0021902.1 mouse_genomes_project 16 17581485 17651631 - Abcc5 protein_coding retained_intron MGP_CASTEiJ_T0043500.1 MGP_CASTEiJ_G0021902.1 mouse_genomes_project 16 17589134 17615245 - Abcc5 protein_coding processed_transcript MGP_CASTEiJ_T0043501.1 MGP_CASTEiJ_G0021902.1 mouse_genomes_project 16 17594654 17615439 - Abcc5 protein_coding retained_intron MGP_CASTEiJ_T0043502.1 MGP_CASTEiJ_G0021902.1 mouse_genomes_project 16 17620206 17629178 - Abcc5 protein_coding retained_intron MGP_CASTEiJ_T0043503.1 MGP_CASTEiJ_G0021902.1 mouse_genomes_project 16 17630996 17648506 - Abcc5 protein_coding retained_intron MGP_CASTEiJ_T0043504.1 MGP_CASTEiJ_G0021902.1 mouse_genomes_project 16 17644769 17679688 - MGP_CASTEiJ_P0043504 Abcc5 protein_coding protein_coding MGP_CASTEiJ_T0043505.1 MGP_CASTEiJ_G0021902.1 mouse_genomes_project 16 17650831 17652296 - Abcc5 protein_coding retained_intron MGP_CASTEiJ_T0043506.1 MGP_CASTEiJ_G0021902.1 mouse_genomes_project 16 17652769 17680025 - Abcc5 protein_coding retained_intron MGP_CASTEiJ_T0043507.1 MGP_CASTEiJ_G0021902.1 mouse_genomes_project 16 17652770 17680055 - MGP_CASTEiJ_P0043507 Abcc5 protein_coding protein_coding MGP_CASTEiJ_T0043508.1 MGP_CASTEiJ_G0021902.1 mouse_genomes_project 16 17652771 17656717 - Abcc5 protein_coding processed_transcript MGP_CASTEiJ_T0044820.1 MGP_CASTEiJ_G0022260.1 mouse_genomes_project 16 89332916 89333516 - MGP_CASTEiJ_P0044820 Krtap6-5 protein_coding protein_coding MGP_CASTEiJ_T0044615.1 MGP_CASTEiJ_G0022182.1 mouse_genomes_project 16 58320921 58321845 - MGP_CASTEiJ_P0044615 Olfr202 protein_coding protein_coding MGP_CASTEiJ_T0044931.1 MGP_CASTEiJ_G0022295.1 mouse_genomes_project 16 92120818 92147766 - MGP_CASTEiJ_P0044931 Gart protein_coding protein_coding MGP_CASTEiJ_T0044932.1 MGP_CASTEiJ_G0022295.1 mouse_genomes_project 16 92121025 92147718 - MGP_CASTEiJ_P0044932 Gart protein_coding unknown_likely_coding MGP_CASTEiJ_T0044933.1 MGP_CASTEiJ_G0022295.1 mouse_genomes_project 16 92121025 92144173 - MGP_CASTEiJ_P0044933 Gart protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044934.1 MGP_CASTEiJ_G0022295.1 mouse_genomes_project 16 92134579 92147749 - MGP_CASTEiJ_P0044934 Gart protein_coding protein_coding MGP_CASTEiJ_T0044407.1 MGP_CASTEiJ_G0022114.1 mouse_genomes_project 16 44298932 44403981 - MGP_CASTEiJ_P0044407 Phldb2 protein_coding protein_coding MGP_CASTEiJ_T0044408.1 MGP_CASTEiJ_G0022114.1 mouse_genomes_project 16 44299083 44403837 - MGP_CASTEiJ_P0044408 Phldb2 protein_coding protein_coding MGP_CASTEiJ_T0044409.1 MGP_CASTEiJ_G0022114.1 mouse_genomes_project 16 44299847 44360469 - MGP_CASTEiJ_P0044409 Phldb2 protein_coding protein_coding MGP_CASTEiJ_T0044410.1 MGP_CASTEiJ_G0022114.1 mouse_genomes_project 16 44300478 44403906 - MGP_CASTEiJ_P0044410 Phldb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044411.1 MGP_CASTEiJ_G0022114.1 mouse_genomes_project 16 44313535 44519351 - MGP_CASTEiJ_P0044411 Phldb2 protein_coding protein_coding MGP_CASTEiJ_T0044412.1 MGP_CASTEiJ_G0022114.1 mouse_genomes_project 16 44319002 44329546 - Phldb2 protein_coding processed_transcript MGP_CASTEiJ_T0044413.1 MGP_CASTEiJ_G0022114.1 mouse_genomes_project 16 44334985 44347236 - Phldb2 protein_coding processed_transcript MGP_CASTEiJ_T0044414.1 MGP_CASTEiJ_G0022114.1 mouse_genomes_project 16 44338443 44350348 - MGP_CASTEiJ_P0044414 Phldb2 protein_coding protein_coding MGP_CASTEiJ_T0044415.1 MGP_CASTEiJ_G0022114.1 mouse_genomes_project 16 44385093 44519246 - MGP_CASTEiJ_P0044415 Phldb2 protein_coding protein_coding MGP_CASTEiJ_T0044416.1 MGP_CASTEiJ_G0022114.1 mouse_genomes_project 16 44385262 44403946 - Phldb2 protein_coding processed_transcript MGP_CASTEiJ_T0044417.1 MGP_CASTEiJ_G0022114.1 mouse_genomes_project 16 44464582 44465675 - Phldb2 protein_coding processed_transcript MGP_CASTEiJ_T0044418.1 MGP_CASTEiJ_G0022114.1 mouse_genomes_project 16 44464939 44519286 - Phldb2 protein_coding processed_transcript MGP_CASTEiJ_T0006679.1 MGP_CASTEiJ_G0005524.1 mouse_genomes_project 16 49266437 49302406 + G730013B05Rik lincRNA lincRNA MGP_CASTEiJ_T0043696.1 MGP_CASTEiJ_G0021940.1 mouse_genomes_project 16 20651126 20663417 + MGP_CASTEiJ_P0043696 Adipoq protein_coding protein_coding MGP_CASTEiJ_T0043697.1 MGP_CASTEiJ_G0021940.1 mouse_genomes_project 16 20651236 20662681 + MGP_CASTEiJ_P0043697 Adipoq protein_coding protein_coding MGP_CASTEiJ_T0044854.1 MGP_CASTEiJ_G0022276.1 mouse_genomes_project 16 90785338 90908501 + MGP_CASTEiJ_P0044854 Hunk protein_coding unknown_likely_coding MGP_CASTEiJ_T0044855.1 MGP_CASTEiJ_G0022276.1 mouse_genomes_project 16 90785411 90911176 + MGP_CASTEiJ_P0044855 Hunk protein_coding protein_coding MGP_CASTEiJ_T0011472.1 MGP_CASTEiJ_G0009655.1 mouse_genomes_project 16 58039792 58083975 - MGP_CASTEiJ_P0011472 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0009876.1 MGP_CASTEiJ_G0008064.1 mouse_genomes_project 16 52795992 52796057 + Gm25041 miRNA miRNA MGP_CASTEiJ_T0003570.1 MGP_CASTEiJ_G0003236.1 mouse_genomes_project 16 54963252 54964606 - Zbtb11os1 antisense antisense MGP_CASTEiJ_T0044578.1 MGP_CASTEiJ_G0022161.1 mouse_genomes_project 16 57632077 57635651 - MGP_CASTEiJ_P0044578 E330017A01Rik protein_coding protein_coding MGP_CASTEiJ_T0042857.1 MGP_CASTEiJ_G0021752.1 mouse_genomes_project 16 5154652 5173697 + MGP_CASTEiJ_P0042857 Mettl22 protein_coding protein_coding MGP_CASTEiJ_T0042858.1 MGP_CASTEiJ_G0021752.1 mouse_genomes_project 16 5154655 5171689 + MGP_CASTEiJ_P0042858 Mettl22 protein_coding protein_coding MGP_CASTEiJ_T0042859.1 MGP_CASTEiJ_G0021752.1 mouse_genomes_project 16 5154668 5167508 + MGP_CASTEiJ_P0042859 Mettl22 protein_coding protein_coding MGP_CASTEiJ_T0042860.1 MGP_CASTEiJ_G0021752.1 mouse_genomes_project 16 5168749 5171850 + Mettl22 protein_coding retained_intron MGP_CASTEiJ_T0042861.1 MGP_CASTEiJ_G0021752.1 mouse_genomes_project 16 5169970 5173209 + Mettl22 protein_coding retained_intron MGP_CASTEiJ_T0012814.1 MGP_CASTEiJ_G0010977.1 mouse_genomes_project 16 74668043 74669051 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045023.1 MGP_CASTEiJ_G0022310.1 mouse_genomes_project 16 94253288 94284577 - MGP_CASTEiJ_P0045023 Setd4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045024.1 MGP_CASTEiJ_G0022310.1 mouse_genomes_project 16 94253290 94284585 - Setd4 protein_coding retained_intron MGP_CASTEiJ_T0045025.1 MGP_CASTEiJ_G0022310.1 mouse_genomes_project 16 94253291 94260053 - Setd4 protein_coding processed_transcript MGP_CASTEiJ_T0045026.1 MGP_CASTEiJ_G0022310.1 mouse_genomes_project 16 94253293 94260414 - Setd4 protein_coding retained_intron MGP_CASTEiJ_T0045027.1 MGP_CASTEiJ_G0022310.1 mouse_genomes_project 16 94262281 94272428 - Setd4 protein_coding processed_transcript MGP_CASTEiJ_T0045028.1 MGP_CASTEiJ_G0022310.1 mouse_genomes_project 16 94262413 94284857 - Setd4 protein_coding processed_transcript MGP_CASTEiJ_T0045029.1 MGP_CASTEiJ_G0022310.1 mouse_genomes_project 16 94277828 94284609 - Setd4 protein_coding processed_transcript MGP_CASTEiJ_T0099492.1 MGP_CASTEiJ_G0036405.1 mouse_genomes_project 16 34340156 34340259 - Gm25465 snRNA snRNA MGP_CASTEiJ_T0044803.1 MGP_CASTEiJ_G0022245.1 mouse_genomes_project 16 89021730 89023956 + MGP_CASTEiJ_P0044803 2310034C09Rik protein_coding protein_coding MGP_CASTEiJ_T0044674.1 MGP_CASTEiJ_G0022203.1 mouse_genomes_project 16 69388777 69390878 - MGP_CASTEiJ_P0044674 protein_coding protein_coding MGP_CASTEiJ_T0042906.1 MGP_CASTEiJ_G0021764.1 mouse_genomes_project 16 7079142 7114273 - MGP_CASTEiJ_P0042906 Emp2 protein_coding protein_coding MGP_CASTEiJ_T0100705.1 MGP_CASTEiJ_G0037618.1 mouse_genomes_project 16 16569220 16569346 + Gm22158 snoRNA snoRNA MGP_CASTEiJ_T0042746.1 MGP_CASTEiJ_G0021723.1 mouse_genomes_project 16 985598 1032263 - MGP_CASTEiJ_P0042746 Srl protein_coding protein_coding MGP_CASTEiJ_T0042747.1 MGP_CASTEiJ_G0021723.1 mouse_genomes_project 16 985610 1032263 - MGP_CASTEiJ_P0042747 Srl protein_coding protein_coding MGP_CASTEiJ_T0042748.1 MGP_CASTEiJ_G0021723.1 mouse_genomes_project 16 992907 1052978 - Srl protein_coding processed_transcript MGP_CASTEiJ_T0042749.1 MGP_CASTEiJ_G0021723.1 mouse_genomes_project 16 998934 1032251 - Srl protein_coding retained_intron MGP_CASTEiJ_T0043462.1 MGP_CASTEiJ_G0021890.1 mouse_genomes_project 16 16807031 16808258 - MGP_CASTEiJ_P0043462 protein_coding protein_coding MGP_CASTEiJ_T0006655.1 MGP_CASTEiJ_G0005503.1 mouse_genomes_project 16 16396834 16443591 - lincRNA lincRNA MGP_CASTEiJ_T0044880.1 MGP_CASTEiJ_G0022282.1 mouse_genomes_project 16 91379516 91458552 - MGP_CASTEiJ_P0044880 Synj1 protein_coding protein_coding MGP_CASTEiJ_T0044881.1 MGP_CASTEiJ_G0022282.1 mouse_genomes_project 16 91379525 91458339 - MGP_CASTEiJ_P0044881 Synj1 protein_coding protein_coding MGP_CASTEiJ_T0044882.1 MGP_CASTEiJ_G0022282.1 mouse_genomes_project 16 91379530 91395000 - MGP_CASTEiJ_P0044882 Synj1 protein_coding protein_coding MGP_CASTEiJ_T0044883.1 MGP_CASTEiJ_G0022282.1 mouse_genomes_project 16 91381655 91458357 - MGP_CASTEiJ_P0044883 Synj1 protein_coding protein_coding MGP_CASTEiJ_T0044884.1 MGP_CASTEiJ_G0022282.1 mouse_genomes_project 16 91382072 91391184 - Synj1 protein_coding processed_transcript MGP_CASTEiJ_T0044885.1 MGP_CASTEiJ_G0022282.1 mouse_genomes_project 16 91382218 91389403 - MGP_CASTEiJ_P0044885 Synj1 protein_coding protein_coding MGP_CASTEiJ_T0044886.1 MGP_CASTEiJ_G0022282.1 mouse_genomes_project 16 91389007 91395005 - MGP_CASTEiJ_P0044886 Synj1 protein_coding protein_coding MGP_CASTEiJ_T0044887.1 MGP_CASTEiJ_G0022282.1 mouse_genomes_project 16 91405674 91458305 - Synj1 protein_coding retained_intron MGP_CASTEiJ_T0044888.1 MGP_CASTEiJ_G0022282.1 mouse_genomes_project 16 91409425 91458304 - MGP_CASTEiJ_P0044888 Synj1 protein_coding protein_coding MGP_CASTEiJ_T0044889.1 MGP_CASTEiJ_G0022282.1 mouse_genomes_project 16 91456544 91458307 - Synj1 protein_coding retained_intron MGP_CASTEiJ_T0042835.1 MGP_CASTEiJ_G0021745.1 mouse_genomes_project 16 1712575 1738446 + MGP_CASTEiJ_P0042835 Sec14l5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042836.1 MGP_CASTEiJ_G0021745.1 mouse_genomes_project 16 1712713 1749217 + MGP_CASTEiJ_P0042836 Sec14l5 protein_coding protein_coding MGP_CASTEiJ_T0000931.1 MGP_CASTEiJ_G0000868.1 mouse_genomes_project 16 77327137 77329448 + TEC TEC MGP_CASTEiJ_T0006706.1 MGP_CASTEiJ_G0005540.1 mouse_genomes_project 16 96696381 96698832 - 2810404F17Rik lincRNA lincRNA MGP_CASTEiJ_T0003582.1 MGP_CASTEiJ_G0003246.1 mouse_genomes_project 16 99020497 99020979 - antisense antisense MGP_CASTEiJ_T0099481.1 MGP_CASTEiJ_G0036394.1 mouse_genomes_project 16 14360377 14360484 - Gm24927 snRNA snRNA MGP_CASTEiJ_T0044850.1 MGP_CASTEiJ_G0022274.1 mouse_genomes_project 16 90606200 90612048 + MGP_CASTEiJ_P0044850 Sod1 protein_coding protein_coding MGP_CASTEiJ_T0044658.1 MGP_CASTEiJ_G0022198.1 mouse_genomes_project 16 64160503 64321759 - MGP_CASTEiJ_P0044658 Htr1f protein_coding protein_coding MGP_CASTEiJ_T0000935.1 MGP_CASTEiJ_G0000872.1 mouse_genomes_project 16 77455551 77456459 + TEC TEC MGP_CASTEiJ_T0045001.1 MGP_CASTEiJ_G0022301.1 mouse_genomes_project 16 92587723 92644871 + MGP_CASTEiJ_P0045001 Mrps6 protein_coding protein_coding MGP_CASTEiJ_T0045004.1 MGP_CASTEiJ_G0022301.1 mouse_genomes_project 16 92636678 92644871 + Mrps6 protein_coding processed_transcript MGP_CASTEiJ_T0044816.1 MGP_CASTEiJ_G0022256.1 mouse_genomes_project 16 89233574 89234193 - MGP_CASTEiJ_P0044816 Krtap16-3 protein_coding protein_coding MGP_CASTEiJ_T0043712.1 MGP_CASTEiJ_G0021947.1 mouse_genomes_project 16 21500876 21505922 - MGP_CASTEiJ_P0043712 Rtp2 protein_coding protein_coding MGP_CASTEiJ_T0044927.1 MGP_CASTEiJ_G0022294.1 mouse_genomes_project 16 92113586 92118385 - MGP_CASTEiJ_P0044927 Dnajc28 protein_coding protein_coding MGP_CASTEiJ_T0044928.1 MGP_CASTEiJ_G0022294.1 mouse_genomes_project 16 92115105 92118380 - MGP_CASTEiJ_P0044928 Dnajc28 protein_coding protein_coding MGP_CASTEiJ_T0044929.1 MGP_CASTEiJ_G0022294.1 mouse_genomes_project 16 92116220 92118377 - MGP_CASTEiJ_P0044929 Dnajc28 protein_coding protein_coding MGP_CASTEiJ_T0044930.1 MGP_CASTEiJ_G0022294.1 mouse_genomes_project 16 92116491 92118412 - MGP_CASTEiJ_P0044930 Dnajc28 protein_coding protein_coding MGP_CASTEiJ_T0044556.1 MGP_CASTEiJ_G0022157.1 mouse_genomes_project 16 56648706 56785938 - MGP_CASTEiJ_P0044556 Col8a1 protein_coding protein_coding MGP_CASTEiJ_T0006707.1 MGP_CASTEiJ_G0005541.1 mouse_genomes_project 16 96736500 96804713 - 1600002D24Rik lincRNA lincRNA MGP_CASTEiJ_T0006708.1 MGP_CASTEiJ_G0005541.1 mouse_genomes_project 16 96747471 96827743 - 1600002D24Rik lincRNA lincRNA MGP_CASTEiJ_T0009889.1 MGP_CASTEiJ_G0008077.1 mouse_genomes_project 16 84820139 84820204 + Mir155 miRNA miRNA MGP_CASTEiJ_T0009847.1 MGP_CASTEiJ_G0008035.1 mouse_genomes_project 16 11151527 11151594 + Mir484 miRNA miRNA MGP_CASTEiJ_T0003553.1 MGP_CASTEiJ_G0003223.1 mouse_genomes_project 16 32050748 32051826 + Gm15829 antisense antisense MGP_CASTEiJ_T0044187.1 MGP_CASTEiJ_G0022066.1 mouse_genomes_project 16 36580196 36629332 - MGP_CASTEiJ_P0044187 Maats1 protein_coding protein_coding MGP_CASTEiJ_T0044188.1 MGP_CASTEiJ_G0022066.1 mouse_genomes_project 16 36606731 36629299 - MGP_CASTEiJ_P0044188 Maats1 protein_coding protein_coding MGP_CASTEiJ_T0044189.1 MGP_CASTEiJ_G0022066.1 mouse_genomes_project 16 36618026 36629630 - Maats1 protein_coding processed_transcript MGP_CASTEiJ_T0044813.1 MGP_CASTEiJ_G0022253.1 mouse_genomes_project 16 89164033 89164516 - MGP_CASTEiJ_P0044813 Krtap19-5 protein_coding protein_coding MGP_CASTEiJ_T0000918.1 MGP_CASTEiJ_G0000856.1 mouse_genomes_project 16 38682055 38682494 + TEC TEC MGP_CASTEiJ_T0045012.1 MGP_CASTEiJ_G0022307.1 mouse_genomes_project 16 92947721 93021472 - MGP_CASTEiJ_P0045012 Rcan1 protein_coding protein_coding MGP_CASTEiJ_T0045013.1 MGP_CASTEiJ_G0022307.1 mouse_genomes_project 16 92947721 92955890 - MGP_CASTEiJ_P0045013 Rcan1 protein_coding protein_coding MGP_CASTEiJ_T0009897.1 MGP_CASTEiJ_G0008085.1 mouse_genomes_project 16 98894327 98894386 - Mir6964 miRNA miRNA MGP_CASTEiJ_T0044455.1 MGP_CASTEiJ_G0022128.1 mouse_genomes_project 16 47719842 47869450 + MGP_CASTEiJ_P0044455 Myh15 protein_coding protein_coding MGP_CASTEiJ_T0100728.1 MGP_CASTEiJ_G0037641.1 mouse_genomes_project 16 52290110 52290219 - Gm22459 snoRNA snoRNA MGP_CASTEiJ_T0044494.1 MGP_CASTEiJ_G0022140.1 mouse_genomes_project 16 54955631 54961438 + MGP_CASTEiJ_P0044494 Rpl24 protein_coding protein_coding MGP_CASTEiJ_T0044495.1 MGP_CASTEiJ_G0022140.1 mouse_genomes_project 16 54955777 54961438 + Rpl24 protein_coding processed_transcript MGP_CASTEiJ_T0044496.1 MGP_CASTEiJ_G0022140.1 mouse_genomes_project 16 54955903 54959768 + Rpl24 protein_coding retained_intron MGP_CASTEiJ_T0044497.1 MGP_CASTEiJ_G0022140.1 mouse_genomes_project 16 54959988 54961438 + Rpl24 protein_coding retained_intron MGP_CASTEiJ_T0044348.1 MGP_CASTEiJ_G0022101.1 mouse_genomes_project 16 43472586 43493129 + MGP_CASTEiJ_P0044348 Cd200r3 protein_coding protein_coding MGP_CASTEiJ_T0044349.1 MGP_CASTEiJ_G0022101.1 mouse_genomes_project 16 43472586 43491618 + MGP_CASTEiJ_P0044349 Cd200r3 protein_coding protein_coding MGP_CASTEiJ_T0044350.1 MGP_CASTEiJ_G0022101.1 mouse_genomes_project 16 43472586 43492325 + MGP_CASTEiJ_P0044350 Cd200r3 protein_coding protein_coding MGP_CASTEiJ_T0044351.1 MGP_CASTEiJ_G0022101.1 mouse_genomes_project 16 43472586 43491618 + MGP_CASTEiJ_P0044351 Cd200r3 protein_coding protein_coding MGP_CASTEiJ_T0044352.1 MGP_CASTEiJ_G0022101.1 mouse_genomes_project 16 43472586 43492325 + MGP_CASTEiJ_P0044352 Cd200r3 protein_coding protein_coding MGP_CASTEiJ_T0044353.1 MGP_CASTEiJ_G0022101.1 mouse_genomes_project 16 43472600 43508308 + MGP_CASTEiJ_P0044353 Cd200r3 protein_coding protein_coding MGP_CASTEiJ_T0044354.1 MGP_CASTEiJ_G0022101.1 mouse_genomes_project 16 43472614 43508279 + MGP_CASTEiJ_P0044354 Cd200r3 protein_coding protein_coding MGP_CASTEiJ_T0044355.1 MGP_CASTEiJ_G0022101.1 mouse_genomes_project 16 43472650 43493344 + MGP_CASTEiJ_P0044355 Cd200r3 protein_coding protein_coding MGP_CASTEiJ_T0044356.1 MGP_CASTEiJ_G0022101.1 mouse_genomes_project 16 43472657 43487819 + MGP_CASTEiJ_P0044356 Cd200r3 protein_coding protein_coding MGP_CASTEiJ_T0044357.1 MGP_CASTEiJ_G0022101.1 mouse_genomes_project 16 43492210 43493907 + Cd200r3 protein_coding retained_intron MGP_CASTEiJ_T0000142.1 MGP_CASTEiJ_G0000108.1 mouse_genomes_project 16 16257827 16258414 - MGP_CASTEiJ_P0000142 IG_V_gene IG_V_gene MGP_CASTEiJ_T0044181.1 MGP_CASTEiJ_G0022063.1 mouse_genomes_project 16 36178283 36272397 + MGP_CASTEiJ_P0044181 Gpr156 protein_coding protein_coding MGP_CASTEiJ_T0044824.1 MGP_CASTEiJ_G0022263.1 mouse_genomes_project 16 89446610 89447089 + MGP_CASTEiJ_P0044824 Gm6358 protein_coding protein_coding MGP_CASTEiJ_T0043890.1 MGP_CASTEiJ_G0021993.1 mouse_genomes_project 16 30173930 30183660 + Wdr53 protein_coding processed_transcript MGP_CASTEiJ_T0043891.1 MGP_CASTEiJ_G0021993.1 mouse_genomes_project 16 30173930 30183981 + MGP_CASTEiJ_P0043891 Wdr53 protein_coding protein_coding MGP_CASTEiJ_T0043892.1 MGP_CASTEiJ_G0021993.1 mouse_genomes_project 16 30173956 30183990 + MGP_CASTEiJ_P0043892 Wdr53 protein_coding protein_coding MGP_CASTEiJ_T0043893.1 MGP_CASTEiJ_G0021993.1 mouse_genomes_project 16 30174104 30178863 + Wdr53 protein_coding retained_intron MGP_CASTEiJ_T0044832.1 MGP_CASTEiJ_G0022271.1 mouse_genomes_project 16 89819541 89820169 - MGP_CASTEiJ_P0044832 Krtap7-1 protein_coding protein_coding MGP_CASTEiJ_T0043188.1 MGP_CASTEiJ_G0021831.1 mouse_genomes_project 16 14143842 14152442 + MGP_CASTEiJ_P0043188 Ydjc protein_coding protein_coding MGP_CASTEiJ_T0043189.1 MGP_CASTEiJ_G0021831.1 mouse_genomes_project 16 14145064 14149065 + Ydjc protein_coding retained_intron MGP_CASTEiJ_T0043190.1 MGP_CASTEiJ_G0021831.1 mouse_genomes_project 16 14147153 14162966 + MGP_CASTEiJ_P0043190 Ydjc protein_coding protein_coding MGP_CASTEiJ_T0043191.1 MGP_CASTEiJ_G0021831.1 mouse_genomes_project 16 14147165 14152858 + Ydjc protein_coding retained_intron MGP_CASTEiJ_T0043192.1 MGP_CASTEiJ_G0021831.1 mouse_genomes_project 16 14147192 14149065 + Ydjc protein_coding retained_intron MGP_CASTEiJ_T0043193.1 MGP_CASTEiJ_G0021831.1 mouse_genomes_project 16 14147195 14149065 + MGP_CASTEiJ_P0043193 Ydjc protein_coding protein_coding MGP_CASTEiJ_T0044830.1 MGP_CASTEiJ_G0022269.1 mouse_genomes_project 16 89738456 89739122 - MGP_CASTEiJ_P0044830 Krtap6-2 protein_coding protein_coding MGP_CASTEiJ_T0012774.1 MGP_CASTEiJ_G0010937.1 mouse_genomes_project 16 19970620 19970893 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044475.1 MGP_CASTEiJ_G0022133.1 mouse_genomes_project 16 50824970 51018981 + MGP_CASTEiJ_P0044475 Cblb protein_coding unknown_likely_coding MGP_CASTEiJ_T0044476.1 MGP_CASTEiJ_G0022133.1 mouse_genomes_project 16 50825049 51018974 + MGP_CASTEiJ_P0044476 Cblb protein_coding protein_coding MGP_CASTEiJ_T0043547.1 MGP_CASTEiJ_G0021909.1 mouse_genomes_project 16 17873072 17880467 + MGP_CASTEiJ_P0043547 Ece2 protein_coding protein_coding MGP_CASTEiJ_T0043548.1 MGP_CASTEiJ_G0021909.1 mouse_genomes_project 16 17873080 17880329 + MGP_CASTEiJ_P0043548 Ece2 protein_coding protein_coding MGP_CASTEiJ_T0043549.1 MGP_CASTEiJ_G0021909.1 mouse_genomes_project 16 17873080 17907378 + MGP_CASTEiJ_P0043549 Ece2 protein_coding protein_coding MGP_CASTEiJ_T0043550.1 MGP_CASTEiJ_G0021909.1 mouse_genomes_project 16 17873089 17907383 + MGP_CASTEiJ_P0043550 Ece2 protein_coding protein_coding MGP_CASTEiJ_T0043551.1 MGP_CASTEiJ_G0021909.1 mouse_genomes_project 16 17873273 17907378 + MGP_CASTEiJ_P0043551 Ece2 protein_coding protein_coding MGP_CASTEiJ_T0043553.1 MGP_CASTEiJ_G0021909.1 mouse_genomes_project 16 17891249 17907378 + MGP_CASTEiJ_P0043553 Ece2 protein_coding protein_coding MGP_CASTEiJ_T0043554.1 MGP_CASTEiJ_G0021909.1 mouse_genomes_project 16 17891266 17904500 + Ece2 protein_coding retained_intron MGP_CASTEiJ_T0043555.1 MGP_CASTEiJ_G0021909.1 mouse_genomes_project 16 17891266 17907935 + MGP_CASTEiJ_P0043555 Ece2 protein_coding protein_coding MGP_CASTEiJ_T0043556.1 MGP_CASTEiJ_G0021909.1 mouse_genomes_project 16 17891272 17907378 + MGP_CASTEiJ_P0043556 Ece2 protein_coding protein_coding MGP_CASTEiJ_T0043557.1 MGP_CASTEiJ_G0021909.1 mouse_genomes_project 16 17892570 17899426 + Ece2 protein_coding retained_intron MGP_CASTEiJ_T0043558.1 MGP_CASTEiJ_G0021909.1 mouse_genomes_project 16 17894287 17907944 + MGP_CASTEiJ_P0043558 Ece2 protein_coding protein_coding MGP_CASTEiJ_T0043991.1 MGP_CASTEiJ_G0022016.1 mouse_genomes_project 16 31564467 31727361 + MGP_CASTEiJ_P0043991 Slc12a8 protein_coding protein_coding MGP_CASTEiJ_T0043992.1 MGP_CASTEiJ_G0022016.1 mouse_genomes_project 16 31652654 31727355 + MGP_CASTEiJ_P0043992 Slc12a8 protein_coding protein_coding MGP_CASTEiJ_T0043993.1 MGP_CASTEiJ_G0022016.1 mouse_genomes_project 16 31673722 31684332 + Slc12a8 protein_coding processed_transcript MGP_CASTEiJ_T0009892.1 MGP_CASTEiJ_G0008080.1 mouse_genomes_project 16 92464417 92464495 - Gm27773 miRNA miRNA MGP_CASTEiJ_T0099498.1 MGP_CASTEiJ_G0036411.1 mouse_genomes_project 16 37230730 37230829 + Gm22500 snRNA snRNA MGP_CASTEiJ_T0043443.1 MGP_CASTEiJ_G0021881.1 mouse_genomes_project 16 15961118 16077319 + MGP_CASTEiJ_P0043443 Gm28539 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000910.1 MGP_CASTEiJ_G0000849.1 mouse_genomes_project 16 361719 362087 - TEC TEC MGP_CASTEiJ_T0000911.1 MGP_CASTEiJ_G0000849.1 mouse_genomes_project 16 361751 362087 - TEC TEC MGP_CASTEiJ_T0044190.1 MGP_CASTEiJ_G0022067.1 mouse_genomes_project 16 36634869 36640655 + MGP_CASTEiJ_P0044190 Gm21987 protein_coding protein_coding MGP_CASTEiJ_T0044191.1 MGP_CASTEiJ_G0022067.1 mouse_genomes_project 16 36634874 36640633 + Gm21987 protein_coding processed_transcript MGP_CASTEiJ_T0044192.1 MGP_CASTEiJ_G0022067.1 mouse_genomes_project 16 36634900 36640636 + MGP_CASTEiJ_P0044192 Gm21987 protein_coding protein_coding MGP_CASTEiJ_T0044193.1 MGP_CASTEiJ_G0022067.1 mouse_genomes_project 16 36634918 36640623 + Gm21987 protein_coding retained_intron MGP_CASTEiJ_T0044195.1 MGP_CASTEiJ_G0022067.1 mouse_genomes_project 16 36637118 36640615 + Gm21987 protein_coding retained_intron MGP_CASTEiJ_T0044196.1 MGP_CASTEiJ_G0022067.1 mouse_genomes_project 16 36637170 36640637 + Gm21987 protein_coding processed_transcript MGP_CASTEiJ_T0044045.1 MGP_CASTEiJ_G0022029.1 mouse_genomes_project 16 33697209 33810225 + Sema5b protein_coding retained_intron MGP_CASTEiJ_T0044046.1 MGP_CASTEiJ_G0022029.1 mouse_genomes_project 16 33697426 33827494 + MGP_CASTEiJ_P0044046 Sema5b protein_coding protein_coding MGP_CASTEiJ_T0044047.1 MGP_CASTEiJ_G0022029.1 mouse_genomes_project 16 33697635 33827494 + MGP_CASTEiJ_P0044047 Sema5b protein_coding protein_coding MGP_CASTEiJ_T0044048.1 MGP_CASTEiJ_G0022029.1 mouse_genomes_project 16 33821424 33821817 + Sema5b protein_coding retained_intron MGP_CASTEiJ_T0044049.1 MGP_CASTEiJ_G0022029.1 mouse_genomes_project 16 33821914 33827970 + MGP_CASTEiJ_P0044049 Sema5b protein_coding protein_coding MGP_CASTEiJ_T0044050.1 MGP_CASTEiJ_G0022029.1 mouse_genomes_project 16 33822764 33823610 + Sema5b protein_coding retained_intron MGP_CASTEiJ_T0044051.1 MGP_CASTEiJ_G0022029.1 mouse_genomes_project 16 33824539 33826551 + MGP_CASTEiJ_P0044051 Sema5b protein_coding protein_coding MGP_CASTEiJ_T0044052.1 MGP_CASTEiJ_G0022029.1 mouse_genomes_project 16 33825707 33826691 + Sema5b protein_coding retained_intron MGP_CASTEiJ_T0102102.1 MGP_CASTEiJ_G0038827.1 mouse_genomes_project 16 34338027 34340021 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0009844.1 MGP_CASTEiJ_G0008032.1 mouse_genomes_project 16 10395066 10395167 - Mir6365 miRNA miRNA MGP_CASTEiJ_T0044227.1 MGP_CASTEiJ_G0022076.1 mouse_genomes_project 16 36894564 37016637 - MGP_CASTEiJ_P0044227 Arhgap31 protein_coding protein_coding MGP_CASTEiJ_T0044228.1 MGP_CASTEiJ_G0022076.1 mouse_genomes_project 16 36919667 37016262 - Arhgap31 protein_coding processed_transcript MGP_CASTEiJ_T0044229.1 MGP_CASTEiJ_G0022076.1 mouse_genomes_project 16 36934970 37016261 - Arhgap31 protein_coding retained_intron MGP_CASTEiJ_T0006667.1 MGP_CASTEiJ_G0005513.1 mouse_genomes_project 16 27992368 27998794 + 1700025H01Rik lincRNA lincRNA MGP_CASTEiJ_T0012793.1 MGP_CASTEiJ_G0010956.1 mouse_genomes_project 16 36986316 36986871 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100708.1 MGP_CASTEiJ_G0037621.1 mouse_genomes_project 16 20612562 20612631 + Snord2 snoRNA snoRNA MGP_CASTEiJ_T0003534.1 MGP_CASTEiJ_G0003208.1 mouse_genomes_project 16 10303619 10324129 - antisense antisense MGP_CASTEiJ_T0003535.1 MGP_CASTEiJ_G0003208.1 mouse_genomes_project 16 10316340 10324125 - antisense antisense MGP_CASTEiJ_T0003577.1 MGP_CASTEiJ_G0003241.1 mouse_genomes_project 16 92860532 92864285 - 1700048M11Rik antisense antisense MGP_CASTEiJ_T0009884.1 MGP_CASTEiJ_G0008072.1 mouse_genomes_project 16 74029176 74029254 - Mir691 miRNA miRNA MGP_CASTEiJ_T0043666.1 MGP_CASTEiJ_G0021936.1 mouse_genomes_project 16 20407971 20420900 + MGP_CASTEiJ_P0043666 Hrg protein_coding protein_coding MGP_CASTEiJ_T0006657.1 MGP_CASTEiJ_G0005505.1 mouse_genomes_project 16 19176731 19188224 + 1300002E11Rik lincRNA lincRNA MGP_CASTEiJ_T0006658.1 MGP_CASTEiJ_G0005505.1 mouse_genomes_project 16 19176746 19191108 + 1300002E11Rik lincRNA lincRNA MGP_CASTEiJ_T0006659.1 MGP_CASTEiJ_G0005505.1 mouse_genomes_project 16 19176776 19188224 + 1300002E11Rik lincRNA lincRNA MGP_CASTEiJ_T0099474.1 MGP_CASTEiJ_G0036387.1 mouse_genomes_project 16 5023897 5024001 + Gm26159 snRNA snRNA MGP_CASTEiJ_T0044165.1 MGP_CASTEiJ_G0022058.1 mouse_genomes_project 16 35817866 35873379 + MGP_CASTEiJ_P0044165 Hgd protein_coding protein_coding MGP_CASTEiJ_T0044166.1 MGP_CASTEiJ_G0022058.1 mouse_genomes_project 16 35817963 35873379 + Hgd protein_coding processed_transcript MGP_CASTEiJ_T0044167.1 MGP_CASTEiJ_G0022058.1 mouse_genomes_project 16 35817967 35852992 + Hgd protein_coding retained_intron MGP_CASTEiJ_T0044168.1 MGP_CASTEiJ_G0022058.1 mouse_genomes_project 16 35817995 35857108 + Hgd protein_coding processed_transcript MGP_CASTEiJ_T0044169.1 MGP_CASTEiJ_G0022058.1 mouse_genomes_project 16 35863218 35873379 + Hgd protein_coding processed_transcript MGP_CASTEiJ_T0099485.1 MGP_CASTEiJ_G0036398.1 mouse_genomes_project 16 19153061 19153167 + Gm24898 snRNA snRNA MGP_CASTEiJ_T0044713.1 MGP_CASTEiJ_G0022212.1 mouse_genomes_project 16 76771461 76904289 + MGP_CASTEiJ_P0044713 Usp25 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044714.1 MGP_CASTEiJ_G0022212.1 mouse_genomes_project 16 76771543 76880656 + MGP_CASTEiJ_P0044714 Usp25 protein_coding protein_coding MGP_CASTEiJ_T0043068.1 MGP_CASTEiJ_G0021804.1 mouse_genomes_project 16 11309019 11327583 - MGP_CASTEiJ_P0043068 Fopnl protein_coding protein_coding MGP_CASTEiJ_T0043069.1 MGP_CASTEiJ_G0021804.1 mouse_genomes_project 16 11310015 11327594 - Fopnl protein_coding processed_transcript MGP_CASTEiJ_T0012789.1 MGP_CASTEiJ_G0010952.1 mouse_genomes_project 16 34970100 34970869 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044509.1 MGP_CASTEiJ_G0022144.1 mouse_genomes_project 16 55054741 55056446 + Senp7 protein_coding processed_transcript MGP_CASTEiJ_T0044510.1 MGP_CASTEiJ_G0022144.1 mouse_genomes_project 16 55054746 55109249 + MGP_CASTEiJ_P0044510 Senp7 protein_coding protein_coding MGP_CASTEiJ_T0044511.1 MGP_CASTEiJ_G0022144.1 mouse_genomes_project 16 55054746 55175577 + MGP_CASTEiJ_P0044511 Senp7 protein_coding protein_coding MGP_CASTEiJ_T0044512.1 MGP_CASTEiJ_G0022144.1 mouse_genomes_project 16 55054801 55109244 + Senp7 protein_coding processed_transcript MGP_CASTEiJ_T0044513.1 MGP_CASTEiJ_G0022144.1 mouse_genomes_project 16 55054805 55175577 + MGP_CASTEiJ_P0044513 Senp7 protein_coding protein_coding MGP_CASTEiJ_T0044514.1 MGP_CASTEiJ_G0022144.1 mouse_genomes_project 16 55054812 55081689 + Senp7 protein_coding retained_intron MGP_CASTEiJ_T0044515.1 MGP_CASTEiJ_G0022144.1 mouse_genomes_project 16 55054812 55124936 + MGP_CASTEiJ_P0044515 Senp7 protein_coding protein_coding MGP_CASTEiJ_T0044516.1 MGP_CASTEiJ_G0022144.1 mouse_genomes_project 16 55054817 55109125 + Senp7 protein_coding processed_transcript MGP_CASTEiJ_T0044517.1 MGP_CASTEiJ_G0022144.1 mouse_genomes_project 16 55054817 55127825 + MGP_CASTEiJ_P0044517 Senp7 protein_coding protein_coding MGP_CASTEiJ_T0044518.1 MGP_CASTEiJ_G0022144.1 mouse_genomes_project 16 55165623 55174296 + Senp7 protein_coding retained_intron MGP_CASTEiJ_T0044519.1 MGP_CASTEiJ_G0022144.1 mouse_genomes_project 16 55166090 55173905 + Senp7 protein_coding retained_intron MGP_CASTEiJ_T0044520.1 MGP_CASTEiJ_G0022144.1 mouse_genomes_project 16 55168020 55175549 + Senp7 protein_coding processed_transcript MGP_CASTEiJ_T0044521.1 MGP_CASTEiJ_G0022144.1 mouse_genomes_project 16 55169197 55173810 + Senp7 protein_coding processed_transcript MGP_CASTEiJ_T0044522.1 MGP_CASTEiJ_G0022144.1 mouse_genomes_project 16 55171669 55174285 + Senp7 protein_coding processed_transcript MGP_CASTEiJ_T0006700.1 MGP_CASTEiJ_G0005536.1 mouse_genomes_project 16 91154735 91157699 + lincRNA lincRNA MGP_CASTEiJ_T0006645.1 MGP_CASTEiJ_G0005494.1 mouse_genomes_project 16 7661632 7670103 + Gm26822 lincRNA lincRNA MGP_CASTEiJ_T0043630.1 MGP_CASTEiJ_G0021925.1 mouse_genomes_project 16 19332165 19382966 - MGP_CASTEiJ_P0043630 Liph protein_coding protein_coding MGP_CASTEiJ_T0043631.1 MGP_CASTEiJ_G0021925.1 mouse_genomes_project 16 19332165 19382966 - MGP_CASTEiJ_P0043631 Liph protein_coding protein_coding MGP_CASTEiJ_T0042831.1 MGP_CASTEiJ_G0021743.1 mouse_genomes_project 16 1607465 1646481 + MGP_CASTEiJ_P0042831 Ubn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042832.1 MGP_CASTEiJ_G0021743.1 mouse_genomes_project 16 1608155 1633751 + MGP_CASTEiJ_P0042832 Ubn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0011085.1 MGP_CASTEiJ_G0009273.1 mouse_genomes_project 16 81250327 81250640 - Gm26023 misc_RNA misc_RNA MGP_CASTEiJ_T0043590.1 MGP_CASTEiJ_G0021914.1 mouse_genomes_project 16 17976546 17989728 - MGP_CASTEiJ_P0043590 Clcn2 protein_coding protein_coding MGP_CASTEiJ_T0043591.1 MGP_CASTEiJ_G0021914.1 mouse_genomes_project 16 17976570 17989725 - Clcn2 protein_coding retained_intron MGP_CASTEiJ_T0043592.1 MGP_CASTEiJ_G0021914.1 mouse_genomes_project 16 17976580 17989775 - Clcn2 protein_coding retained_intron MGP_CASTEiJ_T0043593.1 MGP_CASTEiJ_G0021914.1 mouse_genomes_project 16 17976805 17989722 - MGP_CASTEiJ_P0043593 Clcn2 protein_coding protein_coding MGP_CASTEiJ_T0043594.1 MGP_CASTEiJ_G0021914.1 mouse_genomes_project 16 17979125 17991377 - MGP_CASTEiJ_P0043594 Clcn2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043595.1 MGP_CASTEiJ_G0021914.1 mouse_genomes_project 16 17980366 17989575 - MGP_CASTEiJ_P0043595 Clcn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043596.1 MGP_CASTEiJ_G0021914.1 mouse_genomes_project 16 17980773 17982729 - Clcn2 protein_coding retained_intron MGP_CASTEiJ_T0043597.1 MGP_CASTEiJ_G0021914.1 mouse_genomes_project 16 17981305 17982333 - Clcn2 protein_coding retained_intron MGP_CASTEiJ_T0043598.1 MGP_CASTEiJ_G0021914.1 mouse_genomes_project 16 17983699 17985572 - Clcn2 protein_coding retained_intron MGP_CASTEiJ_T0043599.1 MGP_CASTEiJ_G0021914.1 mouse_genomes_project 16 17985917 17987277 - Clcn2 protein_coding retained_intron MGP_CASTEiJ_T0043089.1 MGP_CASTEiJ_G0021812.1 mouse_genomes_project 16 12594992 12649347 + Prkdc protein_coding retained_intron MGP_CASTEiJ_T0043090.1 MGP_CASTEiJ_G0021812.1 mouse_genomes_project 16 12595015 12797935 + MGP_CASTEiJ_P0043090 Prkdc protein_coding protein_coding MGP_CASTEiJ_T0099513.1 MGP_CASTEiJ_G0036426.1 mouse_genomes_project 16 89762886 89762991 - Gm23655 snRNA snRNA MGP_CASTEiJ_T0042855.1 MGP_CASTEiJ_G0021751.1 mouse_genomes_project 16 5083072 5117375 - MGP_CASTEiJ_P0042855 Tmem114 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042856.1 MGP_CASTEiJ_G0021751.1 mouse_genomes_project 16 5102207 5117767 - MGP_CASTEiJ_P0042856 Tmem114 protein_coding protein_coding MGP_CASTEiJ_T0043633.1 MGP_CASTEiJ_G0021927.1 mouse_genomes_project 16 19448082 19561213 - Igf2bp2 protein_coding retained_intron MGP_CASTEiJ_T0043634.1 MGP_CASTEiJ_G0021927.1 mouse_genomes_project 16 19448101 19480523 - Igf2bp2 protein_coding retained_intron MGP_CASTEiJ_T0043635.1 MGP_CASTEiJ_G0021927.1 mouse_genomes_project 16 19449818 19561157 - MGP_CASTEiJ_P0043635 Igf2bp2 protein_coding protein_coding MGP_CASTEiJ_T0043636.1 MGP_CASTEiJ_G0021927.1 mouse_genomes_project 16 19450373 19453273 - Igf2bp2 protein_coding retained_intron MGP_CASTEiJ_T0043637.1 MGP_CASTEiJ_G0021927.1 mouse_genomes_project 16 19466360 19469473 - Igf2bp2 protein_coding retained_intron MGP_CASTEiJ_T0043638.1 MGP_CASTEiJ_G0021927.1 mouse_genomes_project 16 19475302 19535971 - Igf2bp2 protein_coding processed_transcript MGP_CASTEiJ_T0043639.1 MGP_CASTEiJ_G0021927.1 mouse_genomes_project 16 19550107 19561186 - Igf2bp2 protein_coding processed_transcript MGP_CASTEiJ_T0043640.1 MGP_CASTEiJ_G0021927.1 mouse_genomes_project 16 19559071 19561169 - Igf2bp2 protein_coding retained_intron MGP_CASTEiJ_T0043460.1 MGP_CASTEiJ_G0021888.1 mouse_genomes_project 16 16734122 16734734 + MGP_CASTEiJ_P0043460 protein_coding protein_coding MGP_CASTEiJ_T0100731.1 MGP_CASTEiJ_G0037644.1 mouse_genomes_project 16 53567019 53567144 + Gm23180 snoRNA snoRNA MGP_CASTEiJ_T0044898.1 MGP_CASTEiJ_G0022284.1 mouse_genomes_project 16 91502472 91517957 - MGP_CASTEiJ_P0044898 4932438H23Rik protein_coding protein_coding MGP_CASTEiJ_T0044899.1 MGP_CASTEiJ_G0022284.1 mouse_genomes_project 16 91502472 91517957 - MGP_CASTEiJ_P0044899 4932438H23Rik protein_coding protein_coding MGP_CASTEiJ_T0044900.1 MGP_CASTEiJ_G0022284.1 mouse_genomes_project 16 91504400 91546128 - MGP_CASTEiJ_P0044900 4932438H23Rik protein_coding protein_coding MGP_CASTEiJ_T0009887.1 MGP_CASTEiJ_G0008075.1 mouse_genomes_project 16 77392838 77392932 + Mirlet7c-1 miRNA miRNA MGP_CASTEiJ_T0009838.1 MGP_CASTEiJ_G0008026.1 mouse_genomes_project 16 5311240 5311349 - Gm26445 miRNA miRNA MGP_CASTEiJ_T0016745.1 MGP_CASTEiJ_G0014628.1 mouse_genomes_project 16 19985782 19988393 + Gm15651 processed_transcript processed_transcript MGP_CASTEiJ_T0043303.1 MGP_CASTEiJ_G0021849.1 mouse_genomes_project 16 14815977 14828121 + MGP_CASTEiJ_P0043303 Klhl22 protein_coding protein_coding MGP_CASTEiJ_T0043304.1 MGP_CASTEiJ_G0021849.1 mouse_genomes_project 16 14815980 14852153 + MGP_CASTEiJ_P0043304 Klhl22 protein_coding protein_coding MGP_CASTEiJ_T0043305.1 MGP_CASTEiJ_G0021849.1 mouse_genomes_project 16 14815997 14828163 + MGP_CASTEiJ_P0043305 Klhl22 protein_coding protein_coding MGP_CASTEiJ_T0043306.1 MGP_CASTEiJ_G0021849.1 mouse_genomes_project 16 14816022 14835513 + Klhl22 protein_coding retained_intron MGP_CASTEiJ_T0043307.1 MGP_CASTEiJ_G0021849.1 mouse_genomes_project 16 14816030 14852153 + MGP_CASTEiJ_P0043307 Klhl22 protein_coding protein_coding MGP_CASTEiJ_T0043308.1 MGP_CASTEiJ_G0021849.1 mouse_genomes_project 16 14816714 14828114 + MGP_CASTEiJ_P0043308 Klhl22 protein_coding protein_coding MGP_CASTEiJ_T0043309.1 MGP_CASTEiJ_G0021849.1 mouse_genomes_project 16 14819155 14852155 + MGP_CASTEiJ_P0043309 Klhl22 protein_coding protein_coding MGP_CASTEiJ_T0043310.1 MGP_CASTEiJ_G0021849.1 mouse_genomes_project 16 14820402 14828138 + Klhl22 protein_coding retained_intron MGP_CASTEiJ_T0043056.1 MGP_CASTEiJ_G0021800.1 mouse_genomes_project 16 10966226 11087776 + MGP_CASTEiJ_P0043056 2900011O08Rik protein_coding protein_coding MGP_CASTEiJ_T0099511.1 MGP_CASTEiJ_G0036424.1 mouse_genomes_project 16 84375571 84375678 + Gm24508 snRNA snRNA MGP_CASTEiJ_T0012823.1 MGP_CASTEiJ_G0010986.1 mouse_genomes_project 16 92032850 92033731 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0043789.1 MGP_CASTEiJ_G0021971.1 mouse_genomes_project 16 28111577 28114683 - MGP_CASTEiJ_P0043789 Gp5 protein_coding protein_coding MGP_CASTEiJ_T0009850.1 MGP_CASTEiJ_G0008038.1 mouse_genomes_project 16 15231805 15231887 - Mir6366 miRNA miRNA MGP_CASTEiJ_T0100726.1 MGP_CASTEiJ_G0037639.1 mouse_genomes_project 16 50906148 50906281 - Gm23513 snoRNA snoRNA MGP_CASTEiJ_T0045149.1 MGP_CASTEiJ_G0022330.1 mouse_genomes_project 16 97041385 97044497 - Hmgn1 protein_coding retained_intron MGP_CASTEiJ_T0045150.1 MGP_CASTEiJ_G0022330.1 mouse_genomes_project 16 97041441 97046762 - MGP_CASTEiJ_P0045150 Hmgn1 protein_coding protein_coding MGP_CASTEiJ_T0045151.1 MGP_CASTEiJ_G0022330.1 mouse_genomes_project 16 97041441 97046762 - MGP_CASTEiJ_P0045151 Hmgn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045152.1 MGP_CASTEiJ_G0022330.1 mouse_genomes_project 16 97045766 97046624 - Hmgn1 protein_coding retained_intron MGP_CASTEiJ_T0043215.1 MGP_CASTEiJ_G0021836.1 mouse_genomes_project 16 14294034 14424581 - MGP_CASTEiJ_P0043215 Pi4ka protein_coding protein_coding MGP_CASTEiJ_T0043216.1 MGP_CASTEiJ_G0021836.1 mouse_genomes_project 16 14294035 14295342 - Pi4ka protein_coding retained_intron MGP_CASTEiJ_T0043217.1 MGP_CASTEiJ_G0021836.1 mouse_genomes_project 16 14294035 14298660 - Pi4ka protein_coding retained_intron MGP_CASTEiJ_T0043218.1 MGP_CASTEiJ_G0021836.1 mouse_genomes_project 16 14294035 14323282 - MGP_CASTEiJ_P0043218 Pi4ka protein_coding protein_coding MGP_CASTEiJ_T0043219.1 MGP_CASTEiJ_G0021836.1 mouse_genomes_project 16 14294035 14424160 - MGP_CASTEiJ_P0043219 Pi4ka protein_coding protein_coding MGP_CASTEiJ_T0043220.1 MGP_CASTEiJ_G0021836.1 mouse_genomes_project 16 14294036 14295772 - Pi4ka protein_coding retained_intron MGP_CASTEiJ_T0043221.1 MGP_CASTEiJ_G0021836.1 mouse_genomes_project 16 14296518 14297822 - Pi4ka protein_coding retained_intron MGP_CASTEiJ_T0043222.1 MGP_CASTEiJ_G0021836.1 mouse_genomes_project 16 14312746 14322905 - MGP_CASTEiJ_P0043222 Pi4ka protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043223.1 MGP_CASTEiJ_G0021836.1 mouse_genomes_project 16 14323393 14341647 - MGP_CASTEiJ_P0043223 Pi4ka protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043224.1 MGP_CASTEiJ_G0021836.1 mouse_genomes_project 16 14328649 14369324 - MGP_CASTEiJ_P0043224 Pi4ka protein_coding protein_coding MGP_CASTEiJ_T0043225.1 MGP_CASTEiJ_G0021836.1 mouse_genomes_project 16 14339133 14369286 - Pi4ka protein_coding retained_intron MGP_CASTEiJ_T0043228.1 MGP_CASTEiJ_G0021836.1 mouse_genomes_project 16 14382611 14424160 - Pi4ka protein_coding retained_intron MGP_CASTEiJ_T0043900.1 MGP_CASTEiJ_G0021998.1 mouse_genomes_project 16 30364187 30375033 + Tctex1d2 protein_coding retained_intron MGP_CASTEiJ_T0043901.1 MGP_CASTEiJ_G0021998.1 mouse_genomes_project 16 30364201 30375035 + MGP_CASTEiJ_P0043901 Tctex1d2 protein_coding protein_coding MGP_CASTEiJ_T0044484.1 MGP_CASTEiJ_G0022135.1 mouse_genomes_project 16 52838643 52841176 + MGP_CASTEiJ_P0044484 protein_coding protein_coding MGP_CASTEiJ_T0042785.1 MGP_CASTEiJ_G0021731.1 mouse_genomes_project 16 1258159 1296059 + MGP_CASTEiJ_P0042785 Hmox2 protein_coding protein_coding MGP_CASTEiJ_T0042786.1 MGP_CASTEiJ_G0021731.1 mouse_genomes_project 16 1258161 1297953 + MGP_CASTEiJ_P0042786 Hmox2 protein_coding protein_coding MGP_CASTEiJ_T0042787.1 MGP_CASTEiJ_G0021731.1 mouse_genomes_project 16 1273538 1297460 + MGP_CASTEiJ_P0042787 Hmox2 protein_coding protein_coding MGP_CASTEiJ_T0042789.1 MGP_CASTEiJ_G0021731.1 mouse_genomes_project 16 1282777 1296301 + MGP_CASTEiJ_P0042789 Hmox2 protein_coding protein_coding MGP_CASTEiJ_T0042790.1 MGP_CASTEiJ_G0021731.1 mouse_genomes_project 16 1282777 1297456 + MGP_CASTEiJ_P0042790 Hmox2 protein_coding protein_coding MGP_CASTEiJ_T0003575.1 MGP_CASTEiJ_G0003239.1 mouse_genomes_project 16 91430747 91434664 + Gm15965 antisense antisense MGP_CASTEiJ_T0044651.1 MGP_CASTEiJ_G0022194.1 mouse_genomes_project 16 62698191 63040962 - MGP_CASTEiJ_P0044651 Epha3 protein_coding protein_coding MGP_CASTEiJ_T0011082.1 MGP_CASTEiJ_G0009270.1 mouse_genomes_project 16 46382516 46382751 + Gm25339 misc_RNA misc_RNA MGP_CASTEiJ_T0044821.1 MGP_CASTEiJ_G0022261.1 mouse_genomes_project 16 89352646 89353237 - MGP_CASTEiJ_P0044821 1110025L11Rik protein_coding protein_coding MGP_CASTEiJ_T0045010.1 MGP_CASTEiJ_G0022306.1 mouse_genomes_project 16 92899239 92911985 - MGP_CASTEiJ_P0045010 Kcne1 protein_coding protein_coding MGP_CASTEiJ_T0045011.1 MGP_CASTEiJ_G0022306.1 mouse_genomes_project 16 92901312 92911398 - MGP_CASTEiJ_P0045011 Kcne1 protein_coding protein_coding MGP_CASTEiJ_T0045031.1 MGP_CASTEiJ_G0022312.1 mouse_genomes_project 16 94423656 94435879 + MGP_CASTEiJ_P0045031 Cbr3 protein_coding protein_coding MGP_CASTEiJ_T0042809.1 MGP_CASTEiJ_G0021738.1 mouse_genomes_project 16 1520419 1530365 + MGP_CASTEiJ_P0042809 4930451G09Rik protein_coding protein_coding MGP_CASTEiJ_T0044831.1 MGP_CASTEiJ_G0022270.1 mouse_genomes_project 16 89799178 89799770 - MGP_CASTEiJ_P0044831 Krtap8-1 protein_coding protein_coding MGP_CASTEiJ_T0043711.1 MGP_CASTEiJ_G0021946.1 mouse_genomes_project 16 21461336 21462599 - MGP_CASTEiJ_P0043711 Sst protein_coding protein_coding MGP_CASTEiJ_T0043889.1 MGP_CASTEiJ_G0021992.1 mouse_genomes_project 16 30157733 30173862 - MGP_CASTEiJ_P0043889 Fbxo45 protein_coding protein_coding MGP_CASTEiJ_T0012771.1 MGP_CASTEiJ_G0010934.1 mouse_genomes_project 16 19442448 19442872 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044447.1 MGP_CASTEiJ_G0022127.1 mouse_genomes_project 16 47656282 47685976 + MGP_CASTEiJ_P0044447 C330027C09Rik protein_coding protein_coding MGP_CASTEiJ_T0044448.1 MGP_CASTEiJ_G0022127.1 mouse_genomes_project 16 47656285 47685976 + MGP_CASTEiJ_P0044448 C330027C09Rik protein_coding protein_coding MGP_CASTEiJ_T0044449.1 MGP_CASTEiJ_G0022127.1 mouse_genomes_project 16 47656320 47663622 + MGP_CASTEiJ_P0044449 C330027C09Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044450.1 MGP_CASTEiJ_G0022127.1 mouse_genomes_project 16 47663400 47664616 + C330027C09Rik protein_coding retained_intron MGP_CASTEiJ_T0044451.1 MGP_CASTEiJ_G0022127.1 mouse_genomes_project 16 47670968 47685922 + C330027C09Rik protein_coding retained_intron MGP_CASTEiJ_T0044452.1 MGP_CASTEiJ_G0022127.1 mouse_genomes_project 16 47673995 47677002 + C330027C09Rik protein_coding retained_intron MGP_CASTEiJ_T0044453.1 MGP_CASTEiJ_G0022127.1 mouse_genomes_project 16 47677006 47678061 + C330027C09Rik protein_coding retained_intron MGP_CASTEiJ_T0044454.1 MGP_CASTEiJ_G0022127.1 mouse_genomes_project 16 47679548 47685980 + C330027C09Rik protein_coding retained_intron MGP_CASTEiJ_T0009856.1 MGP_CASTEiJ_G0008044.1 mouse_genomes_project 16 17131682 17131784 - Gm27883 miRNA miRNA MGP_CASTEiJ_T0044798.1 MGP_CASTEiJ_G0022240.1 mouse_genomes_project 16 88880905 88881786 - MGP_CASTEiJ_P0044798 2310079G19Rik protein_coding protein_coding MGP_CASTEiJ_T0044756.1 MGP_CASTEiJ_G0022227.1 mouse_genomes_project 16 85923515 85932820 - MGP_CASTEiJ_P0044756 Adamts1 protein_coding protein_coding MGP_CASTEiJ_T0044757.1 MGP_CASTEiJ_G0022227.1 mouse_genomes_project 16 85925165 85931172 - MGP_CASTEiJ_P0044757 Adamts1 protein_coding protein_coding MGP_CASTEiJ_T0044758.1 MGP_CASTEiJ_G0022227.1 mouse_genomes_project 16 85927918 85929320 - Adamts1 protein_coding processed_transcript MGP_CASTEiJ_T0043008.1 MGP_CASTEiJ_G0021790.1 mouse_genomes_project 16 10161437 10334561 + MGP_CASTEiJ_P0043008 Mkl2 protein_coding protein_coding MGP_CASTEiJ_T0043009.1 MGP_CASTEiJ_G0021790.1 mouse_genomes_project 16 10161462 10246797 + MGP_CASTEiJ_P0043009 Mkl2 protein_coding protein_coding MGP_CASTEiJ_T0043010.1 MGP_CASTEiJ_G0021790.1 mouse_genomes_project 16 10171318 10246794 + MGP_CASTEiJ_P0043010 Mkl2 protein_coding protein_coding MGP_CASTEiJ_T0043011.1 MGP_CASTEiJ_G0021790.1 mouse_genomes_project 16 10275378 10338115 + MGP_CASTEiJ_P0043011 Mkl2 protein_coding protein_coding MGP_CASTEiJ_T0009841.1 MGP_CASTEiJ_G0008029.1 mouse_genomes_project 16 8120366 8120444 - Mir1945 miRNA miRNA MGP_CASTEiJ_T0101544.1 MGP_CASTEiJ_G0038428.1 mouse_genomes_project 16 36140484 36141574 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0044186.1 MGP_CASTEiJ_G0022065.1 mouse_genomes_project 16 36524216 36576749 - MGP_CASTEiJ_P0044186 Nr1i2 protein_coding protein_coding MGP_CASTEiJ_T0043170.1 MGP_CASTEiJ_G0021827.1 mouse_genomes_project 16 14084566 14111217 - MGP_CASTEiJ_P0043170 Ppil2 protein_coding protein_coding MGP_CASTEiJ_T0043171.1 MGP_CASTEiJ_G0021827.1 mouse_genomes_project 16 14084566 14111212 - MGP_CASTEiJ_P0043171 Ppil2 protein_coding protein_coding MGP_CASTEiJ_T0043172.1 MGP_CASTEiJ_G0021827.1 mouse_genomes_project 16 14085325 14111202 - MGP_CASTEiJ_P0043172 Ppil2 protein_coding protein_coding MGP_CASTEiJ_T0043173.1 MGP_CASTEiJ_G0021827.1 mouse_genomes_project 16 14086615 14087469 - Ppil2 protein_coding retained_intron MGP_CASTEiJ_T0043174.1 MGP_CASTEiJ_G0021827.1 mouse_genomes_project 16 14088111 14089527 - Ppil2 protein_coding retained_intron MGP_CASTEiJ_T0043175.1 MGP_CASTEiJ_G0021827.1 mouse_genomes_project 16 14090856 14101601 - Ppil2 protein_coding retained_intron MGP_CASTEiJ_T0043176.1 MGP_CASTEiJ_G0021827.1 mouse_genomes_project 16 14092930 14095146 - Ppil2 protein_coding retained_intron MGP_CASTEiJ_T0043177.1 MGP_CASTEiJ_G0021827.1 mouse_genomes_project 16 14093762 14111175 - MGP_CASTEiJ_P0043177 Ppil2 protein_coding protein_coding MGP_CASTEiJ_T0043178.1 MGP_CASTEiJ_G0021827.1 mouse_genomes_project 16 14094705 14111196 - Ppil2 protein_coding processed_transcript MGP_CASTEiJ_T0043179.1 MGP_CASTEiJ_G0021827.1 mouse_genomes_project 16 14095010 14111173 - Ppil2 protein_coding retained_intron MGP_CASTEiJ_T0043180.1 MGP_CASTEiJ_G0021827.1 mouse_genomes_project 16 14106135 14111196 - Ppil2 protein_coding processed_transcript MGP_CASTEiJ_T0043181.1 MGP_CASTEiJ_G0021827.1 mouse_genomes_project 16 14108791 14111192 - Ppil2 protein_coding retained_intron MGP_CASTEiJ_T0098529.1 MGP_CASTEiJ_G0035460.1 mouse_genomes_project 16 30985638 30985757 + n-R5s33 rRNA rRNA MGP_CASTEiJ_T0099499.1 MGP_CASTEiJ_G0036412.1 mouse_genomes_project 16 38678404 38678498 + Gm22543 snRNA snRNA MGP_CASTEiJ_T0000927.1 MGP_CASTEiJ_G0000864.1 mouse_genomes_project 16 77197090 77200508 + TEC TEC MGP_CASTEiJ_T0044038.1 MGP_CASTEiJ_G0022026.1 mouse_genomes_project 16 33290306 33458527 + MGP_CASTEiJ_P0044038 Adcy5 protein_coding protein_coding MGP_CASTEiJ_T0100745.1 MGP_CASTEiJ_G0037658.1 mouse_genomes_project 16 84845893 84846020 + Gm26153 snoRNA snoRNA MGP_CASTEiJ_T0043087.1 MGP_CASTEiJ_G0021810.1 mouse_genomes_project 16 12502287 12542219 - MGP_CASTEiJ_P0043087 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044806.1 MGP_CASTEiJ_G0022248.1 mouse_genomes_project 16 89075210 89082376 - MGP_CASTEiJ_P0044806 Krtap14 protein_coding protein_coding MGP_CASTEiJ_T0044808.1 MGP_CASTEiJ_G0022248.1 mouse_genomes_project 16 89081842 89082699 - MGP_CASTEiJ_P0044808 Krtap14 protein_coding protein_coding MGP_CASTEiJ_T0043440.1 MGP_CASTEiJ_G0021880.1 mouse_genomes_project 16 15961112 15964501 + MGP_CASTEiJ_P0043440 2510002D24Rik protein_coding protein_coding MGP_CASTEiJ_T0043441.1 MGP_CASTEiJ_G0021880.1 mouse_genomes_project 16 15961115 15961919 + MGP_CASTEiJ_P0043441 2510002D24Rik protein_coding protein_coding MGP_CASTEiJ_T0043442.1 MGP_CASTEiJ_G0021880.1 mouse_genomes_project 16 15961115 15964386 + MGP_CASTEiJ_P0043442 2510002D24Rik protein_coding protein_coding MGP_CASTEiJ_T0043444.1 MGP_CASTEiJ_G0021880.1 mouse_genomes_project 16 15961189 15964197 + 2510002D24Rik protein_coding retained_intron MGP_CASTEiJ_T0044613.1 MGP_CASTEiJ_G0022180.1 mouse_genomes_project 16 58240432 58241363 - MGP_CASTEiJ_P0044613 protein_coding protein_coding MGP_CASTEiJ_T0044633.1 MGP_CASTEiJ_G0022189.1 mouse_genomes_project 16 58695866 59698072 - MGP_CASTEiJ_P0044633 Epha6 protein_coding protein_coding MGP_CASTEiJ_T0044634.1 MGP_CASTEiJ_G0022189.1 mouse_genomes_project 16 58708597 59097348 - MGP_CASTEiJ_P0044634 Epha6 protein_coding protein_coding MGP_CASTEiJ_T0044635.1 MGP_CASTEiJ_G0022189.1 mouse_genomes_project 16 59522688 59698355 - Epha6 protein_coding retained_intron MGP_CASTEiJ_T0044636.1 MGP_CASTEiJ_G0022189.1 mouse_genomes_project 16 59573470 59698043 - Epha6 protein_coding processed_transcript MGP_CASTEiJ_T0003532.1 MGP_CASTEiJ_G0003206.1 mouse_genomes_project 16 7490940 7507365 - Gm15558 antisense antisense MGP_CASTEiJ_T0006664.1 MGP_CASTEiJ_G0005510.1 mouse_genomes_project 16 27573305 27602548 + Gm26834 lincRNA lincRNA MGP_CASTEiJ_T0043260.1 MGP_CASTEiJ_G0021844.1 mouse_genomes_project 16 14590493 14600990 + MGP_CASTEiJ_P0043260 P2rx6 protein_coding protein_coding MGP_CASTEiJ_T0043261.1 MGP_CASTEiJ_G0021844.1 mouse_genomes_project 16 14590493 14600075 + MGP_CASTEiJ_P0043261 P2rx6 protein_coding protein_coding MGP_CASTEiJ_T0043262.1 MGP_CASTEiJ_G0021844.1 mouse_genomes_project 16 14590541 14606791 + MGP_CASTEiJ_P0043262 P2rx6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042870.1 MGP_CASTEiJ_G0021755.1 mouse_genomes_project 16 5321770 5325593 - MGP_CASTEiJ_P0042870 Tmem186 protein_coding protein_coding MGP_CASTEiJ_T0044527.1 MGP_CASTEiJ_G0022146.1 mouse_genomes_project 16 55459624 55695225 + MGP_CASTEiJ_P0044527 Abi3bp protein_coding protein_coding MGP_CASTEiJ_T0044528.1 MGP_CASTEiJ_G0022146.1 mouse_genomes_project 16 55459624 55695225 + MGP_CASTEiJ_P0044528 Abi3bp protein_coding protein_coding MGP_CASTEiJ_T0044529.1 MGP_CASTEiJ_G0022146.1 mouse_genomes_project 16 55459624 55695225 + MGP_CASTEiJ_P0044529 Abi3bp protein_coding protein_coding MGP_CASTEiJ_T0044530.1 MGP_CASTEiJ_G0022146.1 mouse_genomes_project 16 55459624 55695225 + MGP_CASTEiJ_P0044530 Abi3bp protein_coding protein_coding MGP_CASTEiJ_T0044531.1 MGP_CASTEiJ_G0022146.1 mouse_genomes_project 16 55459692 55695235 + MGP_CASTEiJ_P0044531 Abi3bp protein_coding unknown_likely_coding MGP_CASTEiJ_T0006675.1 MGP_CASTEiJ_G0005521.1 mouse_genomes_project 16 42850526 42853593 + Gm26732 lincRNA lincRNA MGP_CASTEiJ_T0044270.1 MGP_CASTEiJ_G0022084.1 mouse_genomes_project 16 42146364 42161937 - MGP_CASTEiJ_P0044270 Tigit protein_coding protein_coding MGP_CASTEiJ_T0016744.1 MGP_CASTEiJ_G0014627.1 mouse_genomes_project 16 17771711 17778480 - Gm16618 processed_transcript processed_transcript MGP_CASTEiJ_T0012747.1 MGP_CASTEiJ_G0010910.1 mouse_genomes_project 16 8375099 8376566 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009845.1 MGP_CASTEiJ_G0008033.1 mouse_genomes_project 16 10783727 10783816 + Gm27734 miRNA miRNA MGP_CASTEiJ_T0044031.1 MGP_CASTEiJ_G0022022.1 mouse_genomes_project 16 32762975 32792985 + MGP_CASTEiJ_P0044031 Ropn1 protein_coding protein_coding MGP_CASTEiJ_T0044032.1 MGP_CASTEiJ_G0022022.1 mouse_genomes_project 16 32764242 32794413 + MGP_CASTEiJ_P0044032 Ropn1 protein_coding protein_coding MGP_CASTEiJ_T0044393.1 MGP_CASTEiJ_G0022109.1 mouse_genomes_project 16 44155544 44167330 + MGP_CASTEiJ_P0044393 Gcsam protein_coding protein_coding MGP_CASTEiJ_T0044394.1 MGP_CASTEiJ_G0022109.1 mouse_genomes_project 16 44155587 44168959 + MGP_CASTEiJ_P0044394 Gcsam protein_coding protein_coding MGP_CASTEiJ_T0044197.1 MGP_CASTEiJ_G0022069.1 mouse_genomes_project 16 36650120 36665662 + MGP_CASTEiJ_P0044197 Popdc2 protein_coding protein_coding MGP_CASTEiJ_T0044198.1 MGP_CASTEiJ_G0022069.1 mouse_genomes_project 16 36650156 36665662 + MGP_CASTEiJ_P0044198 Popdc2 protein_coding protein_coding MGP_CASTEiJ_T0044199.1 MGP_CASTEiJ_G0022069.1 mouse_genomes_project 16 36656214 36661629 + Popdc2 protein_coding processed_transcript MGP_CASTEiJ_T0044200.1 MGP_CASTEiJ_G0022069.1 mouse_genomes_project 16 36656834 36665209 + Popdc2 protein_coding processed_transcript MGP_CASTEiJ_T0044201.1 MGP_CASTEiJ_G0022069.1 mouse_genomes_project 16 36659406 36661572 + Popdc2 protein_coding processed_transcript MGP_CASTEiJ_T0043909.1 MGP_CASTEiJ_G0022002.1 mouse_genomes_project 16 30563216 30588576 + MGP_CASTEiJ_P0043909 Tfrc protein_coding protein_coding MGP_CASTEiJ_T0043910.1 MGP_CASTEiJ_G0022002.1 mouse_genomes_project 16 30563279 30579474 + MGP_CASTEiJ_P0043910 Tfrc protein_coding protein_coding MGP_CASTEiJ_T0043911.1 MGP_CASTEiJ_G0022002.1 mouse_genomes_project 16 30563546 30567600 + MGP_CASTEiJ_P0043911 Tfrc protein_coding protein_coding MGP_CASTEiJ_T0043912.1 MGP_CASTEiJ_G0022002.1 mouse_genomes_project 16 30569576 30571502 + Tfrc protein_coding retained_intron MGP_CASTEiJ_T0043913.1 MGP_CASTEiJ_G0022002.1 mouse_genomes_project 16 30572624 30575245 + Tfrc protein_coding retained_intron MGP_CASTEiJ_T0043914.1 MGP_CASTEiJ_G0022002.1 mouse_genomes_project 16 30580175 30588572 + Tfrc protein_coding retained_intron MGP_CASTEiJ_T0006660.1 MGP_CASTEiJ_G0005506.1 mouse_genomes_project 16 19228143 19230425 - Gm26744 lincRNA lincRNA MGP_CASTEiJ_T0044812.1 MGP_CASTEiJ_G0022252.1 mouse_genomes_project 16 89148135 89148432 - MGP_CASTEiJ_P0044812 Krtap19-4 protein_coding protein_coding MGP_CASTEiJ_T0044127.1 MGP_CASTEiJ_G0022051.1 mouse_genomes_project 16 35077106 35090502 + Golgb1 protein_coding processed_transcript MGP_CASTEiJ_T0044128.1 MGP_CASTEiJ_G0022051.1 mouse_genomes_project 16 35077107 35092303 + MGP_CASTEiJ_P0044128 Golgb1 protein_coding protein_coding MGP_CASTEiJ_T0044129.1 MGP_CASTEiJ_G0022051.1 mouse_genomes_project 16 35077107 35077605 + MGP_CASTEiJ_P0044129 Golgb1 protein_coding protein_coding MGP_CASTEiJ_T0044130.1 MGP_CASTEiJ_G0022051.1 mouse_genomes_project 16 35077134 35135989 + MGP_CASTEiJ_P0044130 Golgb1 protein_coding protein_coding MGP_CASTEiJ_T0044131.1 MGP_CASTEiJ_G0022051.1 mouse_genomes_project 16 35077168 35092305 + MGP_CASTEiJ_P0044131 Golgb1 protein_coding protein_coding MGP_CASTEiJ_T0044132.1 MGP_CASTEiJ_G0022051.1 mouse_genomes_project 16 35089037 35135989 + MGP_CASTEiJ_P0044132 Golgb1 protein_coding protein_coding MGP_CASTEiJ_T0044133.1 MGP_CASTEiJ_G0022051.1 mouse_genomes_project 16 35127360 35131275 + Golgb1 protein_coding retained_intron MGP_CASTEiJ_T0044134.1 MGP_CASTEiJ_G0022051.1 mouse_genomes_project 16 35134303 35134977 + Golgb1 protein_coding retained_intron MGP_CASTEiJ_T0043961.1 MGP_CASTEiJ_G0022009.1 mouse_genomes_project 16 30893639 30999391 + MGP_CASTEiJ_P0043961 Lrch3 protein_coding protein_coding MGP_CASTEiJ_T0043962.1 MGP_CASTEiJ_G0022009.1 mouse_genomes_project 16 30893661 30996897 + MGP_CASTEiJ_P0043962 Lrch3 protein_coding protein_coding MGP_CASTEiJ_T0043963.1 MGP_CASTEiJ_G0022009.1 mouse_genomes_project 16 30893661 30996897 + MGP_CASTEiJ_P0043963 Lrch3 protein_coding protein_coding MGP_CASTEiJ_T0043964.1 MGP_CASTEiJ_G0022009.1 mouse_genomes_project 16 30893662 30971523 + Lrch3 protein_coding retained_intron MGP_CASTEiJ_T0043965.1 MGP_CASTEiJ_G0022009.1 mouse_genomes_project 16 30893666 30956280 + MGP_CASTEiJ_P0043965 Lrch3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043966.1 MGP_CASTEiJ_G0022009.1 mouse_genomes_project 16 30893681 30996244 + MGP_CASTEiJ_P0043966 Lrch3 protein_coding protein_coding MGP_CASTEiJ_T0043967.1 MGP_CASTEiJ_G0022009.1 mouse_genomes_project 16 30893681 30996453 + MGP_CASTEiJ_P0043967 Lrch3 protein_coding protein_coding MGP_CASTEiJ_T0043968.1 MGP_CASTEiJ_G0022009.1 mouse_genomes_project 16 30932342 30940745 + Lrch3 protein_coding processed_transcript MGP_CASTEiJ_T0043969.1 MGP_CASTEiJ_G0022009.1 mouse_genomes_project 16 30961697 30981027 + MGP_CASTEiJ_P0043969 Lrch3 protein_coding protein_coding MGP_CASTEiJ_T0043970.1 MGP_CASTEiJ_G0022009.1 mouse_genomes_project 16 30961725 30980969 + MGP_CASTEiJ_P0043970 Lrch3 protein_coding protein_coding MGP_CASTEiJ_T0043971.1 MGP_CASTEiJ_G0022009.1 mouse_genomes_project 16 30968459 30981080 + MGP_CASTEiJ_P0043971 Lrch3 protein_coding protein_coding MGP_CASTEiJ_T0045197.1 MGP_CASTEiJ_G0022343.1 mouse_genomes_project 16 98576921 98624091 - MGP_CASTEiJ_P0045197 Tmprss2 protein_coding protein_coding MGP_CASTEiJ_T0000932.1 MGP_CASTEiJ_G0000869.1 mouse_genomes_project 16 77351525 77356315 + TEC TEC MGP_CASTEiJ_T0045101.1 MGP_CASTEiJ_G0022323.1 mouse_genomes_project 16 95379834 95511462 + MGP_CASTEiJ_P0045101 Dyrk1a protein_coding protein_coding MGP_CASTEiJ_T0045102.1 MGP_CASTEiJ_G0022323.1 mouse_genomes_project 16 95380306 95508550 + MGP_CASTEiJ_P0045102 Dyrk1a protein_coding protein_coding MGP_CASTEiJ_T0045103.1 MGP_CASTEiJ_G0022323.1 mouse_genomes_project 16 95380691 95481920 + MGP_CASTEiJ_P0045103 Dyrk1a protein_coding protein_coding MGP_CASTEiJ_T0045104.1 MGP_CASTEiJ_G0022323.1 mouse_genomes_project 16 95380734 95511912 + MGP_CASTEiJ_P0045104 Dyrk1a protein_coding protein_coding MGP_CASTEiJ_T0045105.1 MGP_CASTEiJ_G0022323.1 mouse_genomes_project 16 95380734 95484862 + MGP_CASTEiJ_P0045105 Dyrk1a protein_coding protein_coding MGP_CASTEiJ_T0045106.1 MGP_CASTEiJ_G0022323.1 mouse_genomes_project 16 95484926 95495857 + Dyrk1a protein_coding retained_intron MGP_CASTEiJ_T0044550.1 MGP_CASTEiJ_G0022154.1 mouse_genomes_project 16 56281572 56302373 - MGP_CASTEiJ_P0044550 Tmem30c protein_coding protein_coding MGP_CASTEiJ_T0044551.1 MGP_CASTEiJ_G0022154.1 mouse_genomes_project 16 56282292 56302373 - MGP_CASTEiJ_P0044551 Tmem30c protein_coding protein_coding MGP_CASTEiJ_T0043184.1 MGP_CASTEiJ_G0021830.1 mouse_genomes_project 16 14138435 14143306 - MGP_CASTEiJ_P0043184 Ccdc116 protein_coding protein_coding MGP_CASTEiJ_T0043185.1 MGP_CASTEiJ_G0021830.1 mouse_genomes_project 16 14140262 14143433 - MGP_CASTEiJ_P0043185 Ccdc116 protein_coding protein_coding MGP_CASTEiJ_T0043186.1 MGP_CASTEiJ_G0021830.1 mouse_genomes_project 16 14140263 14143647 - MGP_CASTEiJ_P0043186 Ccdc116 protein_coding protein_coding MGP_CASTEiJ_T0043187.1 MGP_CASTEiJ_G0021830.1 mouse_genomes_project 16 14141947 14143662 - Ccdc116 protein_coding processed_transcript MGP_CASTEiJ_T0012824.1 MGP_CASTEiJ_G0010987.1 mouse_genomes_project 16 95434712 95434923 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099477.1 MGP_CASTEiJ_G0036390.1 mouse_genomes_project 16 7847751 7847935 + Gm24961 snRNA snRNA MGP_CASTEiJ_T0044100.1 MGP_CASTEiJ_G0022048.1 mouse_genomes_project 16 34943491 34977240 - MGP_CASTEiJ_P0044100 Slc15a2 protein_coding protein_coding MGP_CASTEiJ_T0044101.1 MGP_CASTEiJ_G0022048.1 mouse_genomes_project 16 34945091 34977098 - MGP_CASTEiJ_P0044101 Slc15a2 protein_coding protein_coding MGP_CASTEiJ_T0044102.1 MGP_CASTEiJ_G0022048.1 mouse_genomes_project 16 34945091 34977070 - MGP_CASTEiJ_P0044102 Slc15a2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044103.1 MGP_CASTEiJ_G0022048.1 mouse_genomes_project 16 34945629 34948073 - Slc15a2 protein_coding retained_intron MGP_CASTEiJ_T0044104.1 MGP_CASTEiJ_G0022048.1 mouse_genomes_project 16 34947772 34948722 - Slc15a2 protein_coding processed_transcript MGP_CASTEiJ_T0044105.1 MGP_CASTEiJ_G0022048.1 mouse_genomes_project 16 34949212 34950019 - Slc15a2 protein_coding retained_intron MGP_CASTEiJ_T0044106.1 MGP_CASTEiJ_G0022048.1 mouse_genomes_project 16 34950436 34956172 - Slc15a2 protein_coding retained_intron MGP_CASTEiJ_T0044107.1 MGP_CASTEiJ_G0022048.1 mouse_genomes_project 16 34950483 34955982 - Slc15a2 protein_coding retained_intron MGP_CASTEiJ_T0044108.1 MGP_CASTEiJ_G0022048.1 mouse_genomes_project 16 34954513 34955898 - Slc15a2 protein_coding retained_intron MGP_CASTEiJ_T0044109.1 MGP_CASTEiJ_G0022048.1 mouse_genomes_project 16 34963139 34977218 - MGP_CASTEiJ_P0044109 Slc15a2 protein_coding protein_coding MGP_CASTEiJ_T0044110.1 MGP_CASTEiJ_G0022048.1 mouse_genomes_project 16 34963142 34977202 - MGP_CASTEiJ_P0044110 Slc15a2 protein_coding protein_coding MGP_CASTEiJ_T0044111.1 MGP_CASTEiJ_G0022048.1 mouse_genomes_project 16 34963336 34964544 - Slc15a2 protein_coding retained_intron MGP_CASTEiJ_T0044112.1 MGP_CASTEiJ_G0022048.1 mouse_genomes_project 16 34972652 34973732 - Slc15a2 protein_coding retained_intron MGP_CASTEiJ_T0009865.1 MGP_CASTEiJ_G0008053.1 mouse_genomes_project 16 31058224 31058283 + Gm22231 miRNA miRNA MGP_CASTEiJ_T0043865.1 MGP_CASTEiJ_G0021988.1 mouse_genomes_project 16 30010983 30027301 - MGP_CASTEiJ_P0043865 Pigx protein_coding protein_coding MGP_CASTEiJ_T0043866.1 MGP_CASTEiJ_G0021988.1 mouse_genomes_project 16 30010985 30014736 - Pigx protein_coding processed_transcript MGP_CASTEiJ_T0043867.1 MGP_CASTEiJ_G0021988.1 mouse_genomes_project 16 30010989 30027278 - Pigx protein_coding processed_transcript MGP_CASTEiJ_T0043868.1 MGP_CASTEiJ_G0021988.1 mouse_genomes_project 16 30010989 30027312 - MGP_CASTEiJ_P0043868 Pigx protein_coding protein_coding MGP_CASTEiJ_T0043869.1 MGP_CASTEiJ_G0021988.1 mouse_genomes_project 16 30011003 30027302 - MGP_CASTEiJ_P0043869 Pigx protein_coding protein_coding MGP_CASTEiJ_T0043870.1 MGP_CASTEiJ_G0021988.1 mouse_genomes_project 16 30011026 30027281 - MGP_CASTEiJ_P0043870 Pigx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043871.1 MGP_CASTEiJ_G0021988.1 mouse_genomes_project 16 30011861 30027267 - MGP_CASTEiJ_P0043871 Pigx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043872.1 MGP_CASTEiJ_G0021988.1 mouse_genomes_project 16 30013883 30027270 - MGP_CASTEiJ_P0043872 Pigx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043873.1 MGP_CASTEiJ_G0021988.1 mouse_genomes_project 16 30014089 30027274 - MGP_CASTEiJ_P0043873 Pigx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043874.1 MGP_CASTEiJ_G0021988.1 mouse_genomes_project 16 30025004 30027285 - MGP_CASTEiJ_P0043874 Pigx protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044395.1 MGP_CASTEiJ_G0022110.1 mouse_genomes_project 16 44172811 44201746 - MGP_CASTEiJ_P0044395 BC016579 protein_coding protein_coding MGP_CASTEiJ_T0044291.1 MGP_CASTEiJ_G0022089.1 mouse_genomes_project 16 42486634 42519601 - MGP_CASTEiJ_P0044291 Gramd1c protein_coding protein_coding MGP_CASTEiJ_T0044292.1 MGP_CASTEiJ_G0022089.1 mouse_genomes_project 16 42486639 42536359 - MGP_CASTEiJ_P0044292 Gramd1c protein_coding protein_coding MGP_CASTEiJ_T0044293.1 MGP_CASTEiJ_G0022089.1 mouse_genomes_project 16 42486639 42523033 - MGP_CASTEiJ_P0044293 Gramd1c protein_coding protein_coding MGP_CASTEiJ_T0044294.1 MGP_CASTEiJ_G0022089.1 mouse_genomes_project 16 42492744 42543905 - MGP_CASTEiJ_P0044294 Gramd1c protein_coding unknown_likely_coding MGP_CASTEiJ_T0044694.1 MGP_CASTEiJ_G0022207.1 mouse_genomes_project 16 75291048 75347101 - MGP_CASTEiJ_P0044694 Lipi protein_coding protein_coding MGP_CASTEiJ_T0044695.1 MGP_CASTEiJ_G0022207.1 mouse_genomes_project 16 75291078 75326002 - Lipi protein_coding processed_transcript MGP_CASTEiJ_T0016777.1 MGP_CASTEiJ_G0014639.1 mouse_genomes_project 16 91458492 91463737 + 4930404I05Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016778.1 MGP_CASTEiJ_G0014639.1 mouse_genomes_project 16 91460964 91463977 + 4930404I05Rik processed_transcript processed_transcript MGP_CASTEiJ_T0006666.1 MGP_CASTEiJ_G0005512.1 mouse_genomes_project 16 27788853 27802584 + 4632428C04Rik lincRNA lincRNA MGP_CASTEiJ_T0100701.1 MGP_CASTEiJ_G0037614.1 mouse_genomes_project 16 5094697 5094869 + Gm24579 snoRNA snoRNA MGP_CASTEiJ_T0100747.1 MGP_CASTEiJ_G0037660.1 mouse_genomes_project 16 86991409 86991534 + Gm25715 snoRNA snoRNA MGP_CASTEiJ_T0044833.1 MGP_CASTEiJ_G0022272.1 mouse_genomes_project 16 89895461 89896469 - MGP_CASTEiJ_P0044833 Krtap11-1 protein_coding protein_coding MGP_CASTEiJ_T0099501.1 MGP_CASTEiJ_G0036414.1 mouse_genomes_project 16 46117192 46117299 - Gm24651 snRNA snRNA MGP_CASTEiJ_T0003573.1 MGP_CASTEiJ_G0003238.1 mouse_genomes_project 16 66143135 66154067 + 4933411O13Rik antisense antisense MGP_CASTEiJ_T0003574.1 MGP_CASTEiJ_G0003238.1 mouse_genomes_project 16 66143141 66164434 + 4933411O13Rik antisense antisense MGP_CASTEiJ_T0044827.1 MGP_CASTEiJ_G0022266.1 mouse_genomes_project 16 89467576 89467735 + MGP_CASTEiJ_P0044827 Gm7735 protein_coding protein_coding MGP_CASTEiJ_T0099493.1 MGP_CASTEiJ_G0036406.1 mouse_genomes_project 16 34426241 34426346 - Gm24801 snRNA snRNA MGP_CASTEiJ_T0009877.1 MGP_CASTEiJ_G0008065.1 mouse_genomes_project 16 54459908 54459975 + Mir5118 miRNA miRNA MGP_CASTEiJ_T0012741.1 MGP_CASTEiJ_G0010904.1 mouse_genomes_project 16 380546 381112 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012802.1 MGP_CASTEiJ_G0010965.1 mouse_genomes_project 16 45670982 45673686 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0043940.1 MGP_CASTEiJ_G0022007.1 mouse_genomes_project 16 30792619 30843230 - MGP_CASTEiJ_P0043940 Rubcn protein_coding protein_coding MGP_CASTEiJ_T0043941.1 MGP_CASTEiJ_G0022007.1 mouse_genomes_project 16 30792622 30843203 - MGP_CASTEiJ_P0043941 Rubcn protein_coding protein_coding MGP_CASTEiJ_T0043942.1 MGP_CASTEiJ_G0022007.1 mouse_genomes_project 16 30792623 30795835 - Rubcn protein_coding retained_intron MGP_CASTEiJ_T0043943.1 MGP_CASTEiJ_G0022007.1 mouse_genomes_project 16 30792644 30843215 - MGP_CASTEiJ_P0043943 Rubcn protein_coding protein_coding MGP_CASTEiJ_T0043944.1 MGP_CASTEiJ_G0022007.1 mouse_genomes_project 16 30794382 30809503 - Rubcn protein_coding retained_intron MGP_CASTEiJ_T0043945.1 MGP_CASTEiJ_G0022007.1 mouse_genomes_project 16 30794773 30852578 - MGP_CASTEiJ_P0043945 Rubcn protein_coding protein_coding MGP_CASTEiJ_T0043946.1 MGP_CASTEiJ_G0022007.1 mouse_genomes_project 16 30798827 30800626 - Rubcn protein_coding retained_intron MGP_CASTEiJ_T0043947.1 MGP_CASTEiJ_G0022007.1 mouse_genomes_project 16 30806416 30807462 - Rubcn protein_coding retained_intron MGP_CASTEiJ_T0043948.1 MGP_CASTEiJ_G0022007.1 mouse_genomes_project 16 30836380 30843202 - Rubcn protein_coding processed_transcript MGP_CASTEiJ_T0043609.1 MGP_CASTEiJ_G0021919.1 mouse_genomes_project 16 18555727 18577737 + MGP_CASTEiJ_P0043609 Ephb3 protein_coding protein_coding MGP_CASTEiJ_T0043610.1 MGP_CASTEiJ_G0021919.1 mouse_genomes_project 16 18562106 18577396 + MGP_CASTEiJ_P0043610 Ephb3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043611.1 MGP_CASTEiJ_G0021919.1 mouse_genomes_project 16 18569605 18577738 + Ephb3 protein_coding retained_intron MGP_CASTEiJ_T0043612.1 MGP_CASTEiJ_G0021919.1 mouse_genomes_project 16 18576064 18577116 + Ephb3 protein_coding retained_intron MGP_CASTEiJ_T0043408.1 MGP_CASTEiJ_G0021872.1 mouse_genomes_project 16 15600614 15679472 + MGP_CASTEiJ_P0043408 Gnb1l protein_coding protein_coding MGP_CASTEiJ_T0043409.1 MGP_CASTEiJ_G0021872.1 mouse_genomes_project 16 15600669 15663333 + MGP_CASTEiJ_P0043409 Gnb1l protein_coding protein_coding MGP_CASTEiJ_T0043410.1 MGP_CASTEiJ_G0021872.1 mouse_genomes_project 16 15600724 15663517 + Gnb1l protein_coding processed_transcript MGP_CASTEiJ_T0043411.1 MGP_CASTEiJ_G0021872.1 mouse_genomes_project 16 15600732 15663383 + MGP_CASTEiJ_P0043411 Gnb1l protein_coding protein_coding MGP_CASTEiJ_T0043412.1 MGP_CASTEiJ_G0021872.1 mouse_genomes_project 16 15600732 15679420 + MGP_CASTEiJ_P0043412 Gnb1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043413.1 MGP_CASTEiJ_G0021872.1 mouse_genomes_project 16 15600734 15679472 + MGP_CASTEiJ_P0043413 Gnb1l protein_coding protein_coding MGP_CASTEiJ_T0043414.1 MGP_CASTEiJ_G0021872.1 mouse_genomes_project 16 15600734 15679472 + MGP_CASTEiJ_P0043414 Gnb1l protein_coding protein_coding MGP_CASTEiJ_T0043415.1 MGP_CASTEiJ_G0021872.1 mouse_genomes_project 16 15600737 15663456 + Gnb1l protein_coding processed_transcript MGP_CASTEiJ_T0043416.1 MGP_CASTEiJ_G0021872.1 mouse_genomes_project 16 15600743 15655086 + MGP_CASTEiJ_P0043416 Gnb1l protein_coding protein_coding MGP_CASTEiJ_T0043418.1 MGP_CASTEiJ_G0021872.1 mouse_genomes_project 16 15600748 15677345 + MGP_CASTEiJ_P0043418 Gnb1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043419.1 MGP_CASTEiJ_G0021872.1 mouse_genomes_project 16 15659659 15663529 + Gnb1l protein_coding processed_transcript MGP_CASTEiJ_T0044273.1 MGP_CASTEiJ_G0022086.1 mouse_genomes_project 16 42369361 42395581 - MGP_CASTEiJ_P0044273 Qtrtd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044274.1 MGP_CASTEiJ_G0022086.1 mouse_genomes_project 16 42369364 42395544 - Qtrtd1 protein_coding retained_intron MGP_CASTEiJ_T0044275.1 MGP_CASTEiJ_G0022086.1 mouse_genomes_project 16 42369364 42395581 - MGP_CASTEiJ_P0044275 Qtrtd1 protein_coding protein_coding MGP_CASTEiJ_T0044276.1 MGP_CASTEiJ_G0022086.1 mouse_genomes_project 16 42370743 42373042 - Qtrtd1 protein_coding retained_intron MGP_CASTEiJ_T0044277.1 MGP_CASTEiJ_G0022086.1 mouse_genomes_project 16 42370989 42432520 - Qtrtd1 protein_coding retained_intron MGP_CASTEiJ_T0044278.1 MGP_CASTEiJ_G0022086.1 mouse_genomes_project 16 42372993 42374880 - Qtrtd1 protein_coding retained_intron MGP_CASTEiJ_T0044279.1 MGP_CASTEiJ_G0022086.1 mouse_genomes_project 16 42374430 42395552 - Qtrtd1 protein_coding retained_intron MGP_CASTEiJ_T0044280.1 MGP_CASTEiJ_G0022086.1 mouse_genomes_project 16 42378332 42381117 - Qtrtd1 protein_coding retained_intron MGP_CASTEiJ_T0044281.1 MGP_CASTEiJ_G0022086.1 mouse_genomes_project 16 42380935 42395551 - MGP_CASTEiJ_P0044281 Qtrtd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044282.1 MGP_CASTEiJ_G0022086.1 mouse_genomes_project 16 42386217 42395552 - Qtrtd1 protein_coding retained_intron MGP_CASTEiJ_T0044419.1 MGP_CASTEiJ_G0022115.1 mouse_genomes_project 16 44526358 44580488 - MGP_CASTEiJ_P0044419 Plcxd2 protein_coding protein_coding MGP_CASTEiJ_T0012791.1 MGP_CASTEiJ_G0010954.1 mouse_genomes_project 16 36772375 36775322 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044815.1 MGP_CASTEiJ_G0022255.1 mouse_genomes_project 16 89208013 89208468 - MGP_CASTEiJ_P0044815 Krtap19-9b protein_coding protein_coding MGP_CASTEiJ_T0042745.1 MGP_CASTEiJ_G0021722.1 mouse_genomes_project 16 777759 920113 - MGP_CASTEiJ_P0042745 Adcy9 protein_coding protein_coding MGP_CASTEiJ_T0044851.1 MGP_CASTEiJ_G0022275.1 mouse_genomes_project 16 90614683 90676165 - MGP_CASTEiJ_P0044851 Scaf4 protein_coding protein_coding MGP_CASTEiJ_T0044852.1 MGP_CASTEiJ_G0022275.1 mouse_genomes_project 16 90614881 90676282 - MGP_CASTEiJ_P0044852 Scaf4 protein_coding protein_coding MGP_CASTEiJ_T0044853.1 MGP_CASTEiJ_G0022275.1 mouse_genomes_project 16 90637846 90675938 - MGP_CASTEiJ_P0044853 Scaf4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042705.1 MGP_CASTEiJ_G0021716.1 mouse_genomes_project 16 361695 376762 + MGP_CASTEiJ_P0042705 Cluap1 protein_coding protein_coding MGP_CASTEiJ_T0042706.1 MGP_CASTEiJ_G0021716.1 mouse_genomes_project 16 361719 396756 + MGP_CASTEiJ_P0042706 Cluap1 protein_coding protein_coding MGP_CASTEiJ_T0042707.1 MGP_CASTEiJ_G0021716.1 mouse_genomes_project 16 361933 366467 + Cluap1 protein_coding retained_intron MGP_CASTEiJ_T0042708.1 MGP_CASTEiJ_G0021716.1 mouse_genomes_project 16 361970 382786 + MGP_CASTEiJ_P0042708 Cluap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042709.1 MGP_CASTEiJ_G0021716.1 mouse_genomes_project 16 362000 376818 + MGP_CASTEiJ_P0042709 Cluap1 protein_coding protein_coding MGP_CASTEiJ_T0044159.1 MGP_CASTEiJ_G0022056.1 mouse_genomes_project 16 35746278 35774651 - MGP_CASTEiJ_P0044159 Gtf2e1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044160.1 MGP_CASTEiJ_G0022056.1 mouse_genomes_project 16 35767431 35774701 - Gtf2e1 protein_coding retained_intron MGP_CASTEiJ_T0006650.1 MGP_CASTEiJ_G0005499.1 mouse_genomes_project 16 9708910 9745394 + 1700003L19Rik lincRNA lincRNA MGP_CASTEiJ_T0044610.1 MGP_CASTEiJ_G0022177.1 mouse_genomes_project 16 58089624 58090129 - MGP_CASTEiJ_P0044610 protein_coding protein_coding MGP_CASTEiJ_T0042698.1 MGP_CASTEiJ_G0021715.1 mouse_genomes_project 16 348091 361548 - 1700037C18Rik protein_coding processed_transcript MGP_CASTEiJ_T0042699.1 MGP_CASTEiJ_G0021715.1 mouse_genomes_project 16 348093 360652 - MGP_CASTEiJ_P0042699 1700037C18Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042701.1 MGP_CASTEiJ_G0021715.1 mouse_genomes_project 16 357207 361584 - MGP_CASTEiJ_P0042701 1700037C18Rik protein_coding protein_coding MGP_CASTEiJ_T0042702.1 MGP_CASTEiJ_G0021715.1 mouse_genomes_project 16 358685 360597 - MGP_CASTEiJ_P0042702 1700037C18Rik protein_coding protein_coding MGP_CASTEiJ_T0042703.1 MGP_CASTEiJ_G0021715.1 mouse_genomes_project 16 359145 360546 - MGP_CASTEiJ_P0042703 1700037C18Rik protein_coding protein_coding MGP_CASTEiJ_T0042704.1 MGP_CASTEiJ_G0021715.1 mouse_genomes_project 16 359901 361518 - MGP_CASTEiJ_P0042704 1700037C18Rik protein_coding protein_coding MGP_CASTEiJ_T0006656.1 MGP_CASTEiJ_G0005504.1 mouse_genomes_project 16 18602451 18655944 - lincRNA lincRNA MGP_CASTEiJ_T0043645.1 MGP_CASTEiJ_G0021929.1 mouse_genomes_project 16 19802575 19864498 - MGP_CASTEiJ_P0043645 Etv5 protein_coding protein_coding MGP_CASTEiJ_T0043646.1 MGP_CASTEiJ_G0021929.1 mouse_genomes_project 16 19802583 19861318 - MGP_CASTEiJ_P0043646 Etv5 protein_coding protein_coding MGP_CASTEiJ_T0043647.1 MGP_CASTEiJ_G0021929.1 mouse_genomes_project 16 19804835 19823082 - MGP_CASTEiJ_P0043647 Etv5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043648.1 MGP_CASTEiJ_G0021929.1 mouse_genomes_project 16 19823116 19864395 - Etv5 protein_coding processed_transcript MGP_CASTEiJ_T0043649.1 MGP_CASTEiJ_G0021929.1 mouse_genomes_project 16 19834006 19864349 - MGP_CASTEiJ_P0043649 Etv5 protein_coding protein_coding MGP_CASTEiJ_T0043474.1 MGP_CASTEiJ_G0021896.1 mouse_genomes_project 16 17182668 17223901 - MGP_CASTEiJ_P0043474 Klhl6 protein_coding protein_coding MGP_CASTEiJ_T0043475.1 MGP_CASTEiJ_G0021896.1 mouse_genomes_project 16 17195317 17207444 - Klhl6 protein_coding retained_intron MGP_CASTEiJ_T0043476.1 MGP_CASTEiJ_G0021896.1 mouse_genomes_project 16 17195337 17223871 - MGP_CASTEiJ_P0043476 Klhl6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043477.1 MGP_CASTEiJ_G0021896.1 mouse_genomes_project 16 17207168 17223794 - MGP_CASTEiJ_P0043477 Klhl6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044804.1 MGP_CASTEiJ_G0022246.1 mouse_genomes_project 16 89037556 89038539 - MGP_CASTEiJ_P0044804 2310057N15Rik protein_coding protein_coding MGP_CASTEiJ_T0009853.1 MGP_CASTEiJ_G0008041.1 mouse_genomes_project 16 15406823 15406888 - Mir185 miRNA miRNA MGP_CASTEiJ_T0044577.1 MGP_CASTEiJ_G0022160.1 mouse_genomes_project 16 57607693 57610984 - MGP_CASTEiJ_P0044577 Gm813 protein_coding protein_coding MGP_CASTEiJ_T0043627.1 MGP_CASTEiJ_G0021922.1 mouse_genomes_project 16 19140312 19167657 - MGP_CASTEiJ_P0043627 Ehhadh protein_coding protein_coding MGP_CASTEiJ_T0044501.1 MGP_CASTEiJ_G0022142.1 mouse_genomes_project 16 55005807 55021612 - MGP_CASTEiJ_P0044501 Pcnp protein_coding unknown_likely_coding MGP_CASTEiJ_T0044502.1 MGP_CASTEiJ_G0022142.1 mouse_genomes_project 16 55005817 55021644 - MGP_CASTEiJ_P0044502 Pcnp protein_coding protein_coding MGP_CASTEiJ_T0044503.1 MGP_CASTEiJ_G0022142.1 mouse_genomes_project 16 55005817 55021601 - MGP_CASTEiJ_P0044503 Pcnp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044504.1 MGP_CASTEiJ_G0022142.1 mouse_genomes_project 16 55007111 55021591 - Pcnp protein_coding processed_transcript MGP_CASTEiJ_T0044505.1 MGP_CASTEiJ_G0022142.1 mouse_genomes_project 16 55007310 55021581 - MGP_CASTEiJ_P0044505 Pcnp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044506.1 MGP_CASTEiJ_G0022142.1 mouse_genomes_project 16 55007343 55021611 - Pcnp protein_coding processed_transcript MGP_CASTEiJ_T0044507.1 MGP_CASTEiJ_G0022142.1 mouse_genomes_project 16 55008357 55021601 - MGP_CASTEiJ_P0044507 Pcnp protein_coding protein_coding MGP_CASTEiJ_T0006701.1 MGP_CASTEiJ_G0005537.1 mouse_genomes_project 16 91786921 91795449 - Gm15966 lincRNA lincRNA MGP_CASTEiJ_T0006702.1 MGP_CASTEiJ_G0005537.1 mouse_genomes_project 16 91787146 91792201 - Gm15966 lincRNA lincRNA MGP_CASTEiJ_T0012819.1 MGP_CASTEiJ_G0010982.1 mouse_genomes_project 16 79797129 79797559 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045110.1 MGP_CASTEiJ_G0022325.1 mouse_genomes_project 16 96114335 96159261 + MGP_CASTEiJ_P0045110 Kcnj15 protein_coding protein_coding MGP_CASTEiJ_T0045111.1 MGP_CASTEiJ_G0022325.1 mouse_genomes_project 16 96114335 96159847 + MGP_CASTEiJ_P0045111 Kcnj15 protein_coding protein_coding MGP_CASTEiJ_T0045112.1 MGP_CASTEiJ_G0022325.1 mouse_genomes_project 16 96114427 96159898 + MGP_CASTEiJ_P0045112 Kcnj15 protein_coding protein_coding MGP_CASTEiJ_T0045113.1 MGP_CASTEiJ_G0022325.1 mouse_genomes_project 16 96114435 96155614 + MGP_CASTEiJ_P0045113 Kcnj15 protein_coding protein_coding MGP_CASTEiJ_T0045114.1 MGP_CASTEiJ_G0022325.1 mouse_genomes_project 16 96114435 96155279 + MGP_CASTEiJ_P0045114 Kcnj15 protein_coding protein_coding MGP_CASTEiJ_T0045115.1 MGP_CASTEiJ_G0022325.1 mouse_genomes_project 16 96114459 96155256 + MGP_CASTEiJ_P0045115 Kcnj15 protein_coding protein_coding MGP_CASTEiJ_T0045116.1 MGP_CASTEiJ_G0022325.1 mouse_genomes_project 16 96116128 96151429 + Kcnj15 protein_coding processed_transcript MGP_CASTEiJ_T0045117.1 MGP_CASTEiJ_G0022325.1 mouse_genomes_project 16 96137173 96151492 + MGP_CASTEiJ_P0045117 Kcnj15 protein_coding protein_coding MGP_CASTEiJ_T0045118.1 MGP_CASTEiJ_G0022325.1 mouse_genomes_project 16 96151223 96156480 + MGP_CASTEiJ_P0045118 Kcnj15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044802.1 MGP_CASTEiJ_G0022244.1 mouse_genomes_project 16 88988555 88989303 + MGP_CASTEiJ_P0044802 Krtap13-1 protein_coding protein_coding MGP_CASTEiJ_T0006649.1 MGP_CASTEiJ_G0005498.1 mouse_genomes_project 16 8069996 8092846 + 2610020C07Rik lincRNA lincRNA MGP_CASTEiJ_T0099504.1 MGP_CASTEiJ_G0036417.1 mouse_genomes_project 16 53939049 53939156 + Gm22977 snRNA snRNA MGP_CASTEiJ_T0043131.1 MGP_CASTEiJ_G0021822.1 mouse_genomes_project 16 13856175 13856925 - MGP_CASTEiJ_P0043131 Vpreb1 protein_coding protein_coding MGP_CASTEiJ_T0043473.1 MGP_CASTEiJ_G0021895.1 mouse_genomes_project 16 17125647 17131781 - MGP_CASTEiJ_P0043473 A930003A15Rik protein_coding protein_coding MGP_CASTEiJ_T0009896.1 MGP_CASTEiJ_G0008084.1 mouse_genomes_project 16 96950571 96950695 - Gm27833 miRNA miRNA MGP_CASTEiJ_T0043349.1 MGP_CASTEiJ_G0021863.1 mouse_genomes_project 16 15290618 15291762 + MGP_CASTEiJ_P0043349 Ccdc188 protein_coding protein_coding MGP_CASTEiJ_T0043902.1 MGP_CASTEiJ_G0021999.1 mouse_genomes_project 16 30376867 30423415 + MGP_CASTEiJ_P0043902 Pcyt1a protein_coding protein_coding MGP_CASTEiJ_T0043903.1 MGP_CASTEiJ_G0021999.1 mouse_genomes_project 16 30376875 30399244 + Pcyt1a protein_coding retained_intron MGP_CASTEiJ_T0043904.1 MGP_CASTEiJ_G0021999.1 mouse_genomes_project 16 30376897 30402432 + Pcyt1a protein_coding retained_intron MGP_CASTEiJ_T0043905.1 MGP_CASTEiJ_G0021999.1 mouse_genomes_project 16 30376957 30402302 + Pcyt1a protein_coding retained_intron MGP_CASTEiJ_T0044580.1 MGP_CASTEiJ_G0022163.1 mouse_genomes_project 16 57718114 57719404 - MGP_CASTEiJ_P0044580 Gpr15 protein_coding protein_coding MGP_CASTEiJ_T0044004.1 MGP_CASTEiJ_G0022019.1 mouse_genomes_project 16 31898784 32031938 + MGP_CASTEiJ_P0044004 Itgb5 protein_coding protein_coding MGP_CASTEiJ_T0044005.1 MGP_CASTEiJ_G0022019.1 mouse_genomes_project 16 31898796 32031945 + MGP_CASTEiJ_P0044005 Itgb5 protein_coding protein_coding MGP_CASTEiJ_T0044006.1 MGP_CASTEiJ_G0022019.1 mouse_genomes_project 16 31951518 31986847 + Itgb5 protein_coding processed_transcript MGP_CASTEiJ_T0044007.1 MGP_CASTEiJ_G0022019.1 mouse_genomes_project 16 31962646 31971057 + Itgb5 protein_coding processed_transcript MGP_CASTEiJ_T0044008.1 MGP_CASTEiJ_G0022019.1 mouse_genomes_project 16 32000833 32025281 + Itgb5 protein_coding processed_transcript MGP_CASTEiJ_T0003541.1 MGP_CASTEiJ_G0003214.1 mouse_genomes_project 16 15706517 15724353 + 4930588K23Rik antisense antisense MGP_CASTEiJ_T0042683.1 MGP_CASTEiJ_G0021711.1 mouse_genomes_project 16 296796 308282 + MGP_CASTEiJ_P0042683 Zfp174 protein_coding protein_coding MGP_CASTEiJ_T0044213.1 MGP_CASTEiJ_G0022075.1 mouse_genomes_project 16 36852974 36887416 + MGP_CASTEiJ_P0044213 Tmem39a protein_coding protein_coding MGP_CASTEiJ_T0044214.1 MGP_CASTEiJ_G0022075.1 mouse_genomes_project 16 36857088 36888388 + MGP_CASTEiJ_P0044214 Tmem39a protein_coding protein_coding MGP_CASTEiJ_T0044215.1 MGP_CASTEiJ_G0022075.1 mouse_genomes_project 16 36857088 36888388 + MGP_CASTEiJ_P0044215 Tmem39a protein_coding protein_coding MGP_CASTEiJ_T0044216.1 MGP_CASTEiJ_G0022075.1 mouse_genomes_project 16 36857137 36882483 + MGP_CASTEiJ_P0044216 Tmem39a protein_coding protein_coding MGP_CASTEiJ_T0044217.1 MGP_CASTEiJ_G0022075.1 mouse_genomes_project 16 36857162 36869416 + Tmem39a protein_coding processed_transcript MGP_CASTEiJ_T0044218.1 MGP_CASTEiJ_G0022075.1 mouse_genomes_project 16 36858465 36878226 + MGP_CASTEiJ_P0044218 Tmem39a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044219.1 MGP_CASTEiJ_G0022075.1 mouse_genomes_project 16 36871667 36881651 + Tmem39a protein_coding retained_intron MGP_CASTEiJ_T0044220.1 MGP_CASTEiJ_G0022075.1 mouse_genomes_project 16 36871990 36887668 + MGP_CASTEiJ_P0044220 Tmem39a protein_coding protein_coding MGP_CASTEiJ_T0044221.1 MGP_CASTEiJ_G0022075.1 mouse_genomes_project 16 36878334 36887168 + MGP_CASTEiJ_P0044221 Tmem39a protein_coding protein_coding MGP_CASTEiJ_T0044222.1 MGP_CASTEiJ_G0022075.1 mouse_genomes_project 16 36881641 36883116 + Tmem39a protein_coding retained_intron MGP_CASTEiJ_T0044223.1 MGP_CASTEiJ_G0022075.1 mouse_genomes_project 16 36881718 36882865 + Tmem39a protein_coding retained_intron MGP_CASTEiJ_T0044224.1 MGP_CASTEiJ_G0022075.1 mouse_genomes_project 16 36881733 36887371 + MGP_CASTEiJ_P0044224 Tmem39a protein_coding protein_coding MGP_CASTEiJ_T0044225.1 MGP_CASTEiJ_G0022075.1 mouse_genomes_project 16 36883436 36887572 + Tmem39a protein_coding processed_transcript MGP_CASTEiJ_T0044226.1 MGP_CASTEiJ_G0022075.1 mouse_genomes_project 16 36884264 36887532 + Tmem39a protein_coding retained_intron MGP_CASTEiJ_T0044436.1 MGP_CASTEiJ_G0022122.1 mouse_genomes_project 16 47368265 47407291 - MGP_CASTEiJ_P0044436 Trat1 protein_coding protein_coding MGP_CASTEiJ_T0044958.1 MGP_CASTEiJ_G0022299.1 mouse_genomes_project 16 92190458 92232703 - MGP_CASTEiJ_P0044958 Cryzl1 protein_coding protein_coding MGP_CASTEiJ_T0044959.1 MGP_CASTEiJ_G0022299.1 mouse_genomes_project 16 92190478 92232530 - MGP_CASTEiJ_P0044959 Cryzl1 protein_coding protein_coding MGP_CASTEiJ_T0044960.1 MGP_CASTEiJ_G0022299.1 mouse_genomes_project 16 92190662 92194119 - Cryzl1 protein_coding processed_transcript MGP_CASTEiJ_T0044961.1 MGP_CASTEiJ_G0022299.1 mouse_genomes_project 16 92190742 92232351 - MGP_CASTEiJ_P0044961 Cryzl1 protein_coding protein_coding MGP_CASTEiJ_T0044962.1 MGP_CASTEiJ_G0022299.1 mouse_genomes_project 16 92193287 92213512 - MGP_CASTEiJ_P0044962 Cryzl1 protein_coding protein_coding MGP_CASTEiJ_T0044963.1 MGP_CASTEiJ_G0022299.1 mouse_genomes_project 16 92193313 92221516 - MGP_CASTEiJ_P0044963 Cryzl1 protein_coding protein_coding MGP_CASTEiJ_T0044964.1 MGP_CASTEiJ_G0022299.1 mouse_genomes_project 16 92195303 92232429 - MGP_CASTEiJ_P0044964 Cryzl1 protein_coding protein_coding MGP_CASTEiJ_T0044965.1 MGP_CASTEiJ_G0022299.1 mouse_genomes_project 16 92195556 92201473 - Cryzl1 protein_coding retained_intron MGP_CASTEiJ_T0044966.1 MGP_CASTEiJ_G0022299.1 mouse_genomes_project 16 92210079 92232328 - Cryzl1 protein_coding retained_intron MGP_CASTEiJ_T0044967.1 MGP_CASTEiJ_G0022299.1 mouse_genomes_project 16 92218612 92232326 - Cryzl1 protein_coding retained_intron MGP_CASTEiJ_T0044968.1 MGP_CASTEiJ_G0022299.1 mouse_genomes_project 16 92219307 92232336 - Cryzl1 protein_coding processed_transcript MGP_CASTEiJ_T0044489.1 MGP_CASTEiJ_G0022138.1 mouse_genomes_project 16 54827938 54886669 - MGP_CASTEiJ_P0044489 Nxpe3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043238.1 MGP_CASTEiJ_G0021841.1 mouse_genomes_project 16 14535100 14552588 + MGP_CASTEiJ_P0043238 Lztr1 protein_coding protein_coding MGP_CASTEiJ_T0043239.1 MGP_CASTEiJ_G0021841.1 mouse_genomes_project 16 14535380 14552586 + MGP_CASTEiJ_P0043239 Lztr1 protein_coding protein_coding MGP_CASTEiJ_T0043240.1 MGP_CASTEiJ_G0021841.1 mouse_genomes_project 16 14535385 14551281 + Lztr1 protein_coding retained_intron MGP_CASTEiJ_T0043241.1 MGP_CASTEiJ_G0021841.1 mouse_genomes_project 16 14535385 14538652 + Lztr1 protein_coding retained_intron MGP_CASTEiJ_T0043242.1 MGP_CASTEiJ_G0021841.1 mouse_genomes_project 16 14535624 14542478 + Lztr1 protein_coding processed_transcript MGP_CASTEiJ_T0043243.1 MGP_CASTEiJ_G0021841.1 mouse_genomes_project 16 14537488 14547452 + Lztr1 protein_coding processed_transcript MGP_CASTEiJ_T0043244.1 MGP_CASTEiJ_G0021841.1 mouse_genomes_project 16 14542254 14545975 + Lztr1 protein_coding processed_transcript MGP_CASTEiJ_T0043245.1 MGP_CASTEiJ_G0021841.1 mouse_genomes_project 16 14544528 14546971 + Lztr1 protein_coding retained_intron MGP_CASTEiJ_T0043246.1 MGP_CASTEiJ_G0021841.1 mouse_genomes_project 16 14547360 14552586 + MGP_CASTEiJ_P0043246 Lztr1 protein_coding protein_coding MGP_CASTEiJ_T0043247.1 MGP_CASTEiJ_G0021841.1 mouse_genomes_project 16 14549085 14550657 + Lztr1 protein_coding retained_intron MGP_CASTEiJ_T0043248.1 MGP_CASTEiJ_G0021841.1 mouse_genomes_project 16 14550499 14552026 + Lztr1 protein_coding retained_intron MGP_CASTEiJ_T0042840.1 MGP_CASTEiJ_G0021747.1 mouse_genomes_project 16 1778819 1789262 - MGP_CASTEiJ_P0042840 AU021092 protein_coding protein_coding MGP_CASTEiJ_T0044340.1 MGP_CASTEiJ_G0022098.1 mouse_genomes_project 16 43278333 43287852 - MGP_CASTEiJ_P0044340 Gtpbp8 protein_coding protein_coding MGP_CASTEiJ_T0044341.1 MGP_CASTEiJ_G0022098.1 mouse_genomes_project 16 43280709 43287848 - MGP_CASTEiJ_P0044341 Gtpbp8 protein_coding protein_coding MGP_CASTEiJ_T0044342.1 MGP_CASTEiJ_G0022098.1 mouse_genomes_project 16 43280832 43287772 - MGP_CASTEiJ_P0044342 Gtpbp8 protein_coding protein_coding MGP_CASTEiJ_T0044343.1 MGP_CASTEiJ_G0022098.1 mouse_genomes_project 16 43285303 43287798 - MGP_CASTEiJ_P0044343 Gtpbp8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006663.1 MGP_CASTEiJ_G0005509.1 mouse_genomes_project 16 22697680 22708352 + A230028O05Rik lincRNA lincRNA MGP_CASTEiJ_T0006678.1 MGP_CASTEiJ_G0005523.1 mouse_genomes_project 16 48498712 48502614 + Gm16619 lincRNA lincRNA MGP_CASTEiJ_T0012815.1 MGP_CASTEiJ_G0010978.1 mouse_genomes_project 16 75490907 75491322 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044113.1 MGP_CASTEiJ_G0022049.1 mouse_genomes_project 16 34987887 35076970 - Eaf2 protein_coding processed_transcript MGP_CASTEiJ_T0044114.1 MGP_CASTEiJ_G0022049.1 mouse_genomes_project 16 34987888 35076970 - Eaf2 protein_coding processed_transcript MGP_CASTEiJ_T0044115.1 MGP_CASTEiJ_G0022049.1 mouse_genomes_project 16 34987889 35002964 - MGP_CASTEiJ_P0044115 Eaf2 protein_coding protein_coding MGP_CASTEiJ_T0044116.1 MGP_CASTEiJ_G0022049.1 mouse_genomes_project 16 34987934 35026264 - MGP_CASTEiJ_P0044116 Eaf2 protein_coding protein_coding MGP_CASTEiJ_T0044117.1 MGP_CASTEiJ_G0022049.1 mouse_genomes_project 16 34987968 35026319 - Eaf2 protein_coding processed_transcript MGP_CASTEiJ_T0044118.1 MGP_CASTEiJ_G0022049.1 mouse_genomes_project 16 35018890 35076781 - Eaf2 protein_coding retained_intron MGP_CASTEiJ_T0100749.1 MGP_CASTEiJ_G0037662.1 mouse_genomes_project 16 87679806 87681974 - Gm24891 snoRNA snoRNA MGP_CASTEiJ_T0012743.1 MGP_CASTEiJ_G0010906.1 mouse_genomes_project 16 5350017 5353469 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045119.1 MGP_CASTEiJ_G0022326.1 mouse_genomes_project 16 96232804 96408073 - MGP_CASTEiJ_P0045119 Erg protein_coding protein_coding MGP_CASTEiJ_T0045120.1 MGP_CASTEiJ_G0022326.1 mouse_genomes_project 16 96232808 96339008 - MGP_CASTEiJ_P0045120 Erg protein_coding protein_coding MGP_CASTEiJ_T0045121.1 MGP_CASTEiJ_G0022326.1 mouse_genomes_project 16 96233833 96408073 - MGP_CASTEiJ_P0045121 Erg protein_coding protein_coding MGP_CASTEiJ_T0045122.1 MGP_CASTEiJ_G0022326.1 mouse_genomes_project 16 96233833 96463376 - MGP_CASTEiJ_P0045122 Erg protein_coding protein_coding MGP_CASTEiJ_T0045123.1 MGP_CASTEiJ_G0022326.1 mouse_genomes_project 16 96233966 96339053 - MGP_CASTEiJ_P0045123 Erg protein_coding protein_coding MGP_CASTEiJ_T0045124.1 MGP_CASTEiJ_G0022326.1 mouse_genomes_project 16 96234269 96401447 - MGP_CASTEiJ_P0045124 Erg protein_coding protein_coding MGP_CASTEiJ_T0045125.1 MGP_CASTEiJ_G0022326.1 mouse_genomes_project 16 96234429 96338950 - MGP_CASTEiJ_P0045125 Erg protein_coding protein_coding MGP_CASTEiJ_T0045126.1 MGP_CASTEiJ_G0022326.1 mouse_genomes_project 16 96234429 96338950 - MGP_CASTEiJ_P0045126 Erg protein_coding protein_coding MGP_CASTEiJ_T0045127.1 MGP_CASTEiJ_G0022326.1 mouse_genomes_project 16 96234429 96408031 - MGP_CASTEiJ_P0045127 Erg protein_coding protein_coding MGP_CASTEiJ_T0042986.1 MGP_CASTEiJ_G0021785.1 mouse_genomes_project 16 8203690 8645228 + MGP_CASTEiJ_P0042986 Snx29 protein_coding protein_coding MGP_CASTEiJ_T0042987.1 MGP_CASTEiJ_G0021785.1 mouse_genomes_project 16 8203754 8280707 + MGP_CASTEiJ_P0042987 Snx29 protein_coding protein_coding MGP_CASTEiJ_T0042988.1 MGP_CASTEiJ_G0021785.1 mouse_genomes_project 16 8282525 8645228 + MGP_CASTEiJ_P0042988 Snx29 protein_coding protein_coding MGP_CASTEiJ_T0042989.1 MGP_CASTEiJ_G0021785.1 mouse_genomes_project 16 8283534 8553022 + MGP_CASTEiJ_P0042989 Snx29 protein_coding protein_coding MGP_CASTEiJ_T0042990.1 MGP_CASTEiJ_G0021785.1 mouse_genomes_project 16 8301572 8570278 + MGP_CASTEiJ_P0042990 Snx29 protein_coding protein_coding MGP_CASTEiJ_T0042991.1 MGP_CASTEiJ_G0021785.1 mouse_genomes_project 16 8327298 8522679 + Snx29 protein_coding retained_intron MGP_CASTEiJ_T0042992.1 MGP_CASTEiJ_G0021785.1 mouse_genomes_project 16 8329427 8553022 + Snx29 protein_coding retained_intron MGP_CASTEiJ_T0003564.1 MGP_CASTEiJ_G0003232.1 mouse_genomes_project 16 44288218 44290008 + antisense antisense MGP_CASTEiJ_T0044309.1 MGP_CASTEiJ_G0022093.1 mouse_genomes_project 16 42753527 42853534 - MGP_CASTEiJ_P0044309 Sidt1 protein_coding protein_coding MGP_CASTEiJ_T0044310.1 MGP_CASTEiJ_G0022093.1 mouse_genomes_project 16 42753527 42783265 - MGP_CASTEiJ_P0044310 Sidt1 protein_coding protein_coding MGP_CASTEiJ_T0044311.1 MGP_CASTEiJ_G0022093.1 mouse_genomes_project 16 42753876 42853739 - MGP_CASTEiJ_P0044311 Sidt1 protein_coding protein_coding MGP_CASTEiJ_T0044312.1 MGP_CASTEiJ_G0022093.1 mouse_genomes_project 16 42786792 42795919 - Sidt1 protein_coding retained_intron MGP_CASTEiJ_T0044313.1 MGP_CASTEiJ_G0022093.1 mouse_genomes_project 16 42795478 42796576 - MGP_CASTEiJ_P0044313 Sidt1 protein_coding protein_coding MGP_CASTEiJ_T0044314.1 MGP_CASTEiJ_G0022093.1 mouse_genomes_project 16 42798329 42853084 - Sidt1 protein_coding processed_transcript MGP_CASTEiJ_T0101542.1 MGP_CASTEiJ_G0038427.1 mouse_genomes_project 16 714611 716515 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101543.1 MGP_CASTEiJ_G0038427.1 mouse_genomes_project 16 715650 716408 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0044086.1 MGP_CASTEiJ_G0022043.1 mouse_genomes_project 16 34493629 34494554 - MGP_CASTEiJ_P0044086 protein_coding protein_coding MGP_CASTEiJ_T0043482.1 MGP_CASTEiJ_G0021900.1 mouse_genomes_project 16 17526368 17548793 - MGP_CASTEiJ_P0043482 Parl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043483.1 MGP_CASTEiJ_G0021900.1 mouse_genomes_project 16 17526368 17548835 - MGP_CASTEiJ_P0043483 Parl protein_coding protein_coding MGP_CASTEiJ_T0043484.1 MGP_CASTEiJ_G0021900.1 mouse_genomes_project 16 17526551 17529793 - Parl protein_coding retained_intron MGP_CASTEiJ_T0043485.1 MGP_CASTEiJ_G0021900.1 mouse_genomes_project 16 17529292 17548788 - Parl protein_coding retained_intron MGP_CASTEiJ_T0043486.1 MGP_CASTEiJ_G0021900.1 mouse_genomes_project 16 17532080 17534833 - Parl protein_coding retained_intron MGP_CASTEiJ_T0043487.1 MGP_CASTEiJ_G0021900.1 mouse_genomes_project 16 17533525 17547774 - Parl protein_coding processed_transcript MGP_CASTEiJ_T0043488.1 MGP_CASTEiJ_G0021900.1 mouse_genomes_project 16 17533551 17548802 - MGP_CASTEiJ_P0043488 Parl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043489.1 MGP_CASTEiJ_G0021900.1 mouse_genomes_project 16 17539327 17544613 - Parl protein_coding retained_intron MGP_CASTEiJ_T0043490.1 MGP_CASTEiJ_G0021900.1 mouse_genomes_project 16 17544043 17548259 - Parl protein_coding processed_transcript MGP_CASTEiJ_T0043491.1 MGP_CASTEiJ_G0021900.1 mouse_genomes_project 16 17544571 17548809 - Parl protein_coding retained_intron MGP_CASTEiJ_T0043602.1 MGP_CASTEiJ_G0021916.1 mouse_genomes_project 16 17997876 18007127 - MGP_CASTEiJ_P0043602 Thpo protein_coding protein_coding MGP_CASTEiJ_T0043603.1 MGP_CASTEiJ_G0021916.1 mouse_genomes_project 16 17997876 18003274 - MGP_CASTEiJ_P0043603 Thpo protein_coding protein_coding MGP_CASTEiJ_T0042959.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 7999939 8043621 - MGP_CASTEiJ_P0042959 Zc3h7a protein_coding protein_coding MGP_CASTEiJ_T0042960.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8000473 8004226 - Zc3h7a protein_coding retained_intron MGP_CASTEiJ_T0042961.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8002388 8005263 - Zc3h7a protein_coding retained_intron MGP_CASTEiJ_T0042962.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8004049 8012424 - MGP_CASTEiJ_P0042962 Zc3h7a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042963.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8004143 8043569 - MGP_CASTEiJ_P0042963 Zc3h7a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042964.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8009108 8043330 - MGP_CASTEiJ_P0042964 Zc3h7a protein_coding protein_coding MGP_CASTEiJ_T0042965.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8009294 8011268 - Zc3h7a protein_coding retained_intron MGP_CASTEiJ_T0042966.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8011269 8015314 - Zc3h7a protein_coding retained_intron MGP_CASTEiJ_T0042967.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8012426 8042203 - MGP_CASTEiJ_P0042967 Zc3h7a protein_coding protein_coding MGP_CASTEiJ_T0042968.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8014192 8015123 - Zc3h7a protein_coding retained_intron MGP_CASTEiJ_T0042969.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8015184 8017929 - Zc3h7a protein_coding retained_intron MGP_CASTEiJ_T0042970.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8015572 8021186 - Zc3h7a protein_coding retained_intron MGP_CASTEiJ_T0042971.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8018195 8023601 - Zc3h7a protein_coding retained_intron MGP_CASTEiJ_T0042972.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8019343 8023623 - Zc3h7a protein_coding retained_intron MGP_CASTEiJ_T0042973.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8021637 8042170 - MGP_CASTEiJ_P0042973 Zc3h7a protein_coding protein_coding MGP_CASTEiJ_T0042974.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8025892 8042795 - MGP_CASTEiJ_P0042974 Zc3h7a protein_coding protein_coding MGP_CASTEiJ_T0042975.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8025902 8043294 - MGP_CASTEiJ_P0042975 Zc3h7a protein_coding protein_coding MGP_CASTEiJ_T0042976.1 MGP_CASTEiJ_G0021781.1 mouse_genomes_project 16 8029224 8043570 - Zc3h7a protein_coding retained_intron MGP_CASTEiJ_T0043163.1 MGP_CASTEiJ_G0021826.1 mouse_genomes_project 16 14065547 14084748 + MGP_CASTEiJ_P0043163 Ypel1 protein_coding protein_coding MGP_CASTEiJ_T0043164.1 MGP_CASTEiJ_G0021826.1 mouse_genomes_project 16 14066001 14084353 + Ypel1 protein_coding processed_transcript MGP_CASTEiJ_T0043165.1 MGP_CASTEiJ_G0021826.1 mouse_genomes_project 16 14066041 14075549 + Ypel1 protein_coding retained_intron MGP_CASTEiJ_T0043166.1 MGP_CASTEiJ_G0021826.1 mouse_genomes_project 16 14066042 14080080 + MGP_CASTEiJ_P0043166 Ypel1 protein_coding protein_coding MGP_CASTEiJ_T0043167.1 MGP_CASTEiJ_G0021826.1 mouse_genomes_project 16 14066069 14085057 + MGP_CASTEiJ_P0043167 Ypel1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043168.1 MGP_CASTEiJ_G0021826.1 mouse_genomes_project 16 14066072 14080162 + MGP_CASTEiJ_P0043168 Ypel1 protein_coding protein_coding MGP_CASTEiJ_T0043169.1 MGP_CASTEiJ_G0021826.1 mouse_genomes_project 16 14066147 14080680 + MGP_CASTEiJ_P0043169 Ypel1 protein_coding protein_coding MGP_CASTEiJ_T0043710.1 MGP_CASTEiJ_G0021945.1 mouse_genomes_project 16 21154057 21160888 + MGP_CASTEiJ_P0043710 Rtp4 protein_coding protein_coding MGP_CASTEiJ_T0044295.1 MGP_CASTEiJ_G0022090.1 mouse_genomes_project 16 42590323 42645911 - MGP_CASTEiJ_P0044295 Atp6v1a protein_coding protein_coding MGP_CASTEiJ_T0044296.1 MGP_CASTEiJ_G0022090.1 mouse_genomes_project 16 42590566 42645810 - MGP_CASTEiJ_P0044296 Atp6v1a protein_coding protein_coding MGP_CASTEiJ_T0044297.1 MGP_CASTEiJ_G0022090.1 mouse_genomes_project 16 42592180 42683401 - MGP_CASTEiJ_P0044297 Atp6v1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0044298.1 MGP_CASTEiJ_G0022090.1 mouse_genomes_project 16 42602486 42645594 - Atp6v1a protein_coding retained_intron MGP_CASTEiJ_T0044299.1 MGP_CASTEiJ_G0022090.1 mouse_genomes_project 16 42614166 42646234 - MGP_CASTEiJ_P0044299 Atp6v1a protein_coding protein_coding MGP_CASTEiJ_T0044300.1 MGP_CASTEiJ_G0022090.1 mouse_genomes_project 16 42614289 42645632 - MGP_CASTEiJ_P0044300 Atp6v1a protein_coding protein_coding MGP_CASTEiJ_T0044301.1 MGP_CASTEiJ_G0022090.1 mouse_genomes_project 16 42616048 42646309 - MGP_CASTEiJ_P0044301 Atp6v1a protein_coding protein_coding MGP_CASTEiJ_T0016740.1 MGP_CASTEiJ_G0014624.1 mouse_genomes_project 16 1822608 1861850 + Gm15983 processed_transcript processed_transcript MGP_CASTEiJ_T0006651.1 MGP_CASTEiJ_G0005500.1 mouse_genomes_project 16 10435526 10441838 - 2310015D24Rik lincRNA lincRNA MGP_CASTEiJ_T0006652.1 MGP_CASTEiJ_G0005500.1 mouse_genomes_project 16 10440595 10442527 - 2310015D24Rik lincRNA lincRNA MGP_CASTEiJ_T0000939.1 MGP_CASTEiJ_G0000876.1 mouse_genomes_project 16 96656646 96657506 + TEC TEC MGP_CASTEiJ_T0043850.1 MGP_CASTEiJ_G0021983.1 mouse_genomes_project 16 29843686 29857170 + MGP_CASTEiJ_P0043850 Pigz protein_coding protein_coding MGP_CASTEiJ_T0043851.1 MGP_CASTEiJ_G0021983.1 mouse_genomes_project 16 29843778 29855472 + Pigz protein_coding processed_transcript MGP_CASTEiJ_T0043852.1 MGP_CASTEiJ_G0021983.1 mouse_genomes_project 16 29843817 29853756 + Pigz protein_coding processed_transcript MGP_CASTEiJ_T0043853.1 MGP_CASTEiJ_G0021983.1 mouse_genomes_project 16 29853136 29853752 + Pigz protein_coding processed_transcript MGP_CASTEiJ_T0043152.1 MGP_CASTEiJ_G0021824.1 mouse_genomes_project 16 13885952 13918479 + MGP_CASTEiJ_P0043152 Ppm1f protein_coding protein_coding MGP_CASTEiJ_T0043153.1 MGP_CASTEiJ_G0021824.1 mouse_genomes_project 16 13886057 13906279 + Ppm1f protein_coding processed_transcript MGP_CASTEiJ_T0042737.1 MGP_CASTEiJ_G0021721.1 mouse_genomes_project 16 554687 698503 - MGP_CASTEiJ_P0042737 Crebbp protein_coding protein_coding MGP_CASTEiJ_T0042738.1 MGP_CASTEiJ_G0021721.1 mouse_genomes_project 16 557066 696086 - MGP_CASTEiJ_P0042738 Crebbp protein_coding protein_coding MGP_CASTEiJ_T0042739.1 MGP_CASTEiJ_G0021721.1 mouse_genomes_project 16 559947 562868 - Crebbp protein_coding retained_intron MGP_CASTEiJ_T0042740.1 MGP_CASTEiJ_G0021721.1 mouse_genomes_project 16 560925 561720 - Crebbp protein_coding retained_intron MGP_CASTEiJ_T0042741.1 MGP_CASTEiJ_G0021721.1 mouse_genomes_project 16 561504 567771 - MGP_CASTEiJ_P0042741 Crebbp protein_coding protein_coding MGP_CASTEiJ_T0042742.1 MGP_CASTEiJ_G0021721.1 mouse_genomes_project 16 564965 602505 - MGP_CASTEiJ_P0042742 Crebbp protein_coding protein_coding MGP_CASTEiJ_T0042743.1 MGP_CASTEiJ_G0021721.1 mouse_genomes_project 16 565316 570570 - MGP_CASTEiJ_P0042743 Crebbp protein_coding protein_coding MGP_CASTEiJ_T0042744.1 MGP_CASTEiJ_G0021721.1 mouse_genomes_project 16 594947 600485 - MGP_CASTEiJ_P0042744 Crebbp protein_coding protein_coding MGP_CASTEiJ_T0045186.1 MGP_CASTEiJ_G0022339.1 mouse_genomes_project 16 97541533 98150757 - MGP_CASTEiJ_P0045186 Dscam protein_coding protein_coding MGP_CASTEiJ_T0044039.1 MGP_CASTEiJ_G0022027.1 mouse_genomes_project 16 33463910 33519983 - MGP_CASTEiJ_P0044039 Sec22a protein_coding protein_coding MGP_CASTEiJ_T0044040.1 MGP_CASTEiJ_G0022027.1 mouse_genomes_project 16 33466838 33503385 - Sec22a protein_coding processed_transcript MGP_CASTEiJ_T0044041.1 MGP_CASTEiJ_G0022027.1 mouse_genomes_project 16 33504556 33519880 - Sec22a protein_coding retained_intron MGP_CASTEiJ_T0044042.1 MGP_CASTEiJ_G0022027.1 mouse_genomes_project 16 33516711 33519917 - Sec22a protein_coding retained_intron MGP_CASTEiJ_T0044043.1 MGP_CASTEiJ_G0022027.1 mouse_genomes_project 16 33517084 33519912 - Sec22a protein_coding processed_transcript MGP_CASTEiJ_T0009895.1 MGP_CASTEiJ_G0008083.1 mouse_genomes_project 16 94961907 94962006 - Gm23062 miRNA miRNA MGP_CASTEiJ_T0098345.1 MGP_CASTEiJ_G0035276.1 mouse_genomes_project 16 14117521 14121456 - pseudogene pseudogene MGP_CASTEiJ_T0099506.1 MGP_CASTEiJ_G0036419.1 mouse_genomes_project 16 54756079 54756179 - Gm26369 snRNA snRNA MGP_CASTEiJ_T0009879.1 MGP_CASTEiJ_G0008067.1 mouse_genomes_project 16 57754859 57754955 - Gm27564 miRNA miRNA MGP_CASTEiJ_T0009863.1 MGP_CASTEiJ_G0008051.1 mouse_genomes_project 16 29132383 29132478 + Gm27415 miRNA miRNA MGP_CASTEiJ_T0043425.1 MGP_CASTEiJ_G0021877.1 mouse_genomes_project 16 15902710 15904126 + MGP_CASTEiJ_P0043425 Cldn5 protein_coding protein_coding MGP_CASTEiJ_T0043348.1 MGP_CASTEiJ_G0021862.1 mouse_genomes_project 16 15191207 15217881 + MGP_CASTEiJ_P0043348 Rtn4r protein_coding protein_coding MGP_CASTEiJ_T0044707.1 MGP_CASTEiJ_G0022211.1 mouse_genomes_project 16 76012746 76102217 - MGP_CASTEiJ_P0044707 Nrip1 protein_coding protein_coding MGP_CASTEiJ_T0044708.1 MGP_CASTEiJ_G0022211.1 mouse_genomes_project 16 76016201 76101438 - MGP_CASTEiJ_P0044708 Nrip1 protein_coding protein_coding MGP_CASTEiJ_T0044709.1 MGP_CASTEiJ_G0022211.1 mouse_genomes_project 16 76019985 76049017 - MGP_CASTEiJ_P0044709 Nrip1 protein_coding protein_coding MGP_CASTEiJ_T0044710.1 MGP_CASTEiJ_G0022211.1 mouse_genomes_project 16 76054627 76101426 - Nrip1 protein_coding retained_intron MGP_CASTEiJ_T0044711.1 MGP_CASTEiJ_G0022211.1 mouse_genomes_project 16 76054840 76101429 - Nrip1 protein_coding retained_intron MGP_CASTEiJ_T0044712.1 MGP_CASTEiJ_G0022211.1 mouse_genomes_project 16 76079154 76101438 - Nrip1 protein_coding retained_intron MGP_CASTEiJ_T0100716.1 MGP_CASTEiJ_G0037629.1 mouse_genomes_project 16 29992878 29993011 + Gm26419 snoRNA snoRNA MGP_CASTEiJ_T0000930.1 MGP_CASTEiJ_G0000867.1 mouse_genomes_project 16 77269367 77269892 + TEC TEC MGP_CASTEiJ_T0044388.1 MGP_CASTEiJ_G0022107.1 mouse_genomes_project 16 43959943 44004316 - Gm609 protein_coding processed_transcript MGP_CASTEiJ_T0044389.1 MGP_CASTEiJ_G0022107.1 mouse_genomes_project 16 43964853 44040907 - MGP_CASTEiJ_P0044389 Gm609 protein_coding protein_coding MGP_CASTEiJ_T0043088.1 MGP_CASTEiJ_G0021811.1 mouse_genomes_project 16 12579841 12594529 - MGP_CASTEiJ_P0043088 Mcm4 protein_coding protein_coding MGP_CASTEiJ_T0044002.1 MGP_CASTEiJ_G0022018.1 mouse_genomes_project 16 31861819 31888558 + MGP_CASTEiJ_P0044002 Muc13 protein_coding protein_coding MGP_CASTEiJ_T0044003.1 MGP_CASTEiJ_G0022018.1 mouse_genomes_project 16 31862149 31888565 + MGP_CASTEiJ_P0044003 Muc13 protein_coding protein_coding MGP_CASTEiJ_T0043608.1 MGP_CASTEiJ_G0021918.1 mouse_genomes_project 16 18382698 18384055 - MGP_CASTEiJ_P0043608 protein_coding protein_coding MGP_CASTEiJ_T0000916.1 MGP_CASTEiJ_G0000854.1 mouse_genomes_project 16 21567737 21569496 + TEC TEC MGP_CASTEiJ_T0102108.1 MGP_CASTEiJ_G0038833.1 mouse_genomes_project 16 94327991 94330240 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0003530.1 MGP_CASTEiJ_G0003204.1 mouse_genomes_project 16 1261668 1262755 + Gm15859 antisense antisense MGP_CASTEiJ_T0043566.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17939652 17950156 + MGP_CASTEiJ_P0043566 Eif4g1 protein_coding protein_coding MGP_CASTEiJ_T0043567.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17939654 17949686 + MGP_CASTEiJ_P0043567 Eif4g1 protein_coding protein_coding MGP_CASTEiJ_T0043568.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17943477 17964467 + MGP_CASTEiJ_P0043568 Eif4g1 protein_coding protein_coding MGP_CASTEiJ_T0043569.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17943480 17954544 + MGP_CASTEiJ_P0043569 Eif4g1 protein_coding protein_coding MGP_CASTEiJ_T0043570.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17943480 17964465 + MGP_CASTEiJ_P0043570 Eif4g1 protein_coding protein_coding MGP_CASTEiJ_T0043571.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17943501 17954550 + MGP_CASTEiJ_P0043571 Eif4g1 protein_coding protein_coding MGP_CASTEiJ_T0043572.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17943502 17954550 + MGP_CASTEiJ_P0043572 Eif4g1 protein_coding protein_coding MGP_CASTEiJ_T0043573.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17943554 17950032 + MGP_CASTEiJ_P0043573 Eif4g1 protein_coding protein_coding MGP_CASTEiJ_T0043574.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17943554 17964468 + MGP_CASTEiJ_P0043574 Eif4g1 protein_coding protein_coding MGP_CASTEiJ_T0043575.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17944026 17964468 + MGP_CASTEiJ_P0043575 Eif4g1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043576.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17944100 17964474 + MGP_CASTEiJ_P0043576 Eif4g1 protein_coding protein_coding MGP_CASTEiJ_T0043577.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17944129 17948559 + MGP_CASTEiJ_P0043577 Eif4g1 protein_coding protein_coding MGP_CASTEiJ_T0043578.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17944151 17964467 + MGP_CASTEiJ_P0043578 Eif4g1 protein_coding protein_coding MGP_CASTEiJ_T0043579.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17944170 17949424 + MGP_CASTEiJ_P0043579 Eif4g1 protein_coding protein_coding MGP_CASTEiJ_T0043580.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17944545 17949420 + MGP_CASTEiJ_P0043580 Eif4g1 protein_coding protein_coding MGP_CASTEiJ_T0043581.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17944842 17949435 + MGP_CASTEiJ_P0043581 Eif4g1 protein_coding protein_coding MGP_CASTEiJ_T0043582.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17949036 17964465 + Eif4g1 protein_coding retained_intron MGP_CASTEiJ_T0043583.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17949166 17950346 + Eif4g1 protein_coding processed_transcript MGP_CASTEiJ_T0043584.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17951753 17952448 + Eif4g1 protein_coding retained_intron MGP_CASTEiJ_T0043585.1 MGP_CASTEiJ_G0021912.1 mouse_genomes_project 16 17960612 17961303 + Eif4g1 protein_coding retained_intron MGP_CASTEiJ_T0044754.1 MGP_CASTEiJ_G0022226.1 mouse_genomes_project 16 85551576 85675579 - MGP_CASTEiJ_P0044754 Cyyr1 protein_coding protein_coding MGP_CASTEiJ_T0044755.1 MGP_CASTEiJ_G0022226.1 mouse_genomes_project 16 85580081 85675579 - MGP_CASTEiJ_P0044755 Cyyr1 protein_coding protein_coding MGP_CASTEiJ_T0009890.1 MGP_CASTEiJ_G0008078.1 mouse_genomes_project 16 91398346 91398420 + Gm22933 miRNA miRNA MGP_CASTEiJ_T0044431.1 MGP_CASTEiJ_G0022118.1 mouse_genomes_project 16 46685276 46685949 + MGP_CASTEiJ_P0044431 Gm7275 protein_coding protein_coding MGP_CASTEiJ_T0003576.1 MGP_CASTEiJ_G0003240.1 mouse_genomes_project 16 92443140 92447331 + Gm15976 antisense antisense MGP_CASTEiJ_T0045198.1 MGP_CASTEiJ_G0022344.1 mouse_genomes_project 16 98761835 98784858 - MGP_CASTEiJ_P0045198 Ripk4 protein_coding protein_coding MGP_CASTEiJ_T0045199.1 MGP_CASTEiJ_G0022344.1 mouse_genomes_project 16 98761836 98784613 - MGP_CASTEiJ_P0045199 Ripk4 protein_coding protein_coding MGP_CASTEiJ_T0045200.1 MGP_CASTEiJ_G0022344.1 mouse_genomes_project 16 98762536 98784892 - MGP_CASTEiJ_P0045200 Ripk4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044053.1 MGP_CASTEiJ_G0022030.1 mouse_genomes_project 16 33860042 33943075 - MGP_CASTEiJ_P0044053 Dirc2 protein_coding protein_coding MGP_CASTEiJ_T0044054.1 MGP_CASTEiJ_G0022030.1 mouse_genomes_project 16 33863563 33943049 - MGP_CASTEiJ_P0044054 Dirc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044602.1 MGP_CASTEiJ_G0022173.1 mouse_genomes_project 16 58016215 58017220 - MGP_CASTEiJ_P0044602 Olfr186 protein_coding protein_coding MGP_CASTEiJ_T0044603.1 MGP_CASTEiJ_G0022173.1 mouse_genomes_project 16 58016812 58019522 - MGP_CASTEiJ_P0044603 Olfr186 protein_coding protein_coding MGP_CASTEiJ_T0003543.1 MGP_CASTEiJ_G0003216.1 mouse_genomes_project 16 23631265 23635114 + Gm4524 antisense antisense MGP_CASTEiJ_T0044170.1 MGP_CASTEiJ_G0022059.1 mouse_genomes_project 16 35890155 35897440 - MGP_CASTEiJ_P0044170 Ndufb4 protein_coding protein_coding MGP_CASTEiJ_T0044171.1 MGP_CASTEiJ_G0022059.1 mouse_genomes_project 16 35890586 35892346 - Ndufb4 protein_coding retained_intron MGP_CASTEiJ_T0044477.1 MGP_CASTEiJ_G0022134.1 mouse_genomes_project 16 51063002 51277134 - MGP_CASTEiJ_P0044477 Alcam protein_coding protein_coding MGP_CASTEiJ_T0044478.1 MGP_CASTEiJ_G0022134.1 mouse_genomes_project 16 51066734 51106739 - MGP_CASTEiJ_P0044478 Alcam protein_coding protein_coding MGP_CASTEiJ_T0044479.1 MGP_CASTEiJ_G0022134.1 mouse_genomes_project 16 51067115 51275522 - MGP_CASTEiJ_P0044479 Alcam protein_coding protein_coding MGP_CASTEiJ_T0044480.1 MGP_CASTEiJ_G0022134.1 mouse_genomes_project 16 51068836 51084684 - Alcam protein_coding retained_intron MGP_CASTEiJ_T0044481.1 MGP_CASTEiJ_G0022134.1 mouse_genomes_project 16 51068869 51086740 - Alcam protein_coding retained_intron MGP_CASTEiJ_T0044482.1 MGP_CASTEiJ_G0022134.1 mouse_genomes_project 16 51083782 51275522 - MGP_CASTEiJ_P0044482 Alcam protein_coding protein_coding MGP_CASTEiJ_T0044483.1 MGP_CASTEiJ_G0022134.1 mouse_genomes_project 16 51115135 51275711 - MGP_CASTEiJ_P0044483 Alcam protein_coding protein_coding MGP_CASTEiJ_T0043388.1 MGP_CASTEiJ_G0021870.1 mouse_genomes_project 16 15495387 15501796 - MGP_CASTEiJ_P0043388 Comt protein_coding protein_coding MGP_CASTEiJ_T0043389.1 MGP_CASTEiJ_G0021870.1 mouse_genomes_project 16 15495806 15520848 - MGP_CASTEiJ_P0043389 Comt protein_coding protein_coding MGP_CASTEiJ_T0043390.1 MGP_CASTEiJ_G0021870.1 mouse_genomes_project 16 15495813 15520381 - MGP_CASTEiJ_P0043390 Comt protein_coding protein_coding MGP_CASTEiJ_T0043391.1 MGP_CASTEiJ_G0021870.1 mouse_genomes_project 16 15499037 15501796 - MGP_CASTEiJ_P0043391 Comt protein_coding protein_coding MGP_CASTEiJ_T0044205.1 MGP_CASTEiJ_G0022073.1 mouse_genomes_project 16 36790562 36814891 - MGP_CASTEiJ_P0044205 Timmdc1 protein_coding protein_coding MGP_CASTEiJ_T0044206.1 MGP_CASTEiJ_G0022073.1 mouse_genomes_project 16 36808889 36814869 - Timmdc1 protein_coding processed_transcript MGP_CASTEiJ_T0043817.1 MGP_CASTEiJ_G0021977.1 mouse_genomes_project 16 28963557 29074333 - MGP_CASTEiJ_P0043817 Acap2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043818.1 MGP_CASTEiJ_G0021977.1 mouse_genomes_project 16 28996094 29074390 - MGP_CASTEiJ_P0043818 Acap2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044315.1 MGP_CASTEiJ_G0022094.1 mouse_genomes_project 16 42868258 42912280 + MGP_CASTEiJ_P0044315 Spice1 protein_coding protein_coding MGP_CASTEiJ_T0044316.1 MGP_CASTEiJ_G0022094.1 mouse_genomes_project 16 42868551 42894449 + Spice1 protein_coding processed_transcript MGP_CASTEiJ_T0044317.1 MGP_CASTEiJ_G0022094.1 mouse_genomes_project 16 42869155 42887351 + Spice1 protein_coding processed_transcript MGP_CASTEiJ_T0044318.1 MGP_CASTEiJ_G0022094.1 mouse_genomes_project 16 42887253 42894087 + Spice1 protein_coding retained_intron MGP_CASTEiJ_T0044319.1 MGP_CASTEiJ_G0022094.1 mouse_genomes_project 16 42887323 42894454 + Spice1 protein_coding retained_intron MGP_CASTEiJ_T0044320.1 MGP_CASTEiJ_G0022094.1 mouse_genomes_project 16 42893704 42909450 + Spice1 protein_coding retained_intron MGP_CASTEiJ_T0044321.1 MGP_CASTEiJ_G0022094.1 mouse_genomes_project 16 42894146 42897311 + Spice1 protein_coding processed_transcript MGP_CASTEiJ_T0044322.1 MGP_CASTEiJ_G0022094.1 mouse_genomes_project 16 42909127 42910887 + Spice1 protein_coding retained_intron MGP_CASTEiJ_T0000143.1 MGP_CASTEiJ_G0000109.1 mouse_genomes_project 16 16257827 16258389 - MGP_CASTEiJ_P0000143 IG_V_gene IG_V_gene MGP_CASTEiJ_T0043707.1 MGP_CASTEiJ_G0021944.1 mouse_genomes_project 16 20991738 21064356 - MGP_CASTEiJ_P0043707 Masp1 protein_coding protein_coding MGP_CASTEiJ_T0043708.1 MGP_CASTEiJ_G0021944.1 mouse_genomes_project 16 21009591 21057777 - MGP_CASTEiJ_P0043708 Masp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043709.1 MGP_CASTEiJ_G0021944.1 mouse_genomes_project 16 21019267 21064316 - MGP_CASTEiJ_P0043709 Masp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043013.1 MGP_CASTEiJ_G0021792.1 mouse_genomes_project 16 10606123 10639487 + MGP_CASTEiJ_P0043013 Bfar protein_coding protein_coding MGP_CASTEiJ_T0043015.1 MGP_CASTEiJ_G0021792.1 mouse_genomes_project 16 10606215 10633825 + MGP_CASTEiJ_P0043015 Bfar protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043016.1 MGP_CASTEiJ_G0021792.1 mouse_genomes_project 16 10606285 10639477 + MGP_CASTEiJ_P0043016 Bfar protein_coding protein_coding MGP_CASTEiJ_T0043017.1 MGP_CASTEiJ_G0021792.1 mouse_genomes_project 16 10606327 10621174 + Bfar protein_coding retained_intron MGP_CASTEiJ_T0043018.1 MGP_CASTEiJ_G0021792.1 mouse_genomes_project 16 10620516 10622977 + Bfar protein_coding retained_intron MGP_CASTEiJ_T0043019.1 MGP_CASTEiJ_G0021792.1 mouse_genomes_project 16 10620788 10623392 + Bfar protein_coding retained_intron MGP_CASTEiJ_T0043020.1 MGP_CASTEiJ_G0021792.1 mouse_genomes_project 16 10627313 10632043 + Bfar protein_coding retained_intron MGP_CASTEiJ_T0044724.1 MGP_CASTEiJ_G0022218.1 mouse_genomes_project 16 78756224 78783371 + MGP_CASTEiJ_P0044724 Chodl protein_coding protein_coding MGP_CASTEiJ_T0044725.1 MGP_CASTEiJ_G0022218.1 mouse_genomes_project 16 78756224 78778766 + MGP_CASTEiJ_P0044725 Chodl protein_coding protein_coding MGP_CASTEiJ_T0044726.1 MGP_CASTEiJ_G0022218.1 mouse_genomes_project 16 78756224 78781541 + MGP_CASTEiJ_P0044726 Chodl protein_coding protein_coding MGP_CASTEiJ_T0042894.1 MGP_CASTEiJ_G0021761.1 mouse_genomes_project 16 6331255 6764775 - MGP_CASTEiJ_P0042894 Grin2a protein_coding unknown_likely_coding MGP_CASTEiJ_T0042895.1 MGP_CASTEiJ_G0021761.1 mouse_genomes_project 16 6338296 6766336 - MGP_CASTEiJ_P0042895 Grin2a protein_coding protein_coding MGP_CASTEiJ_T0042896.1 MGP_CASTEiJ_G0021761.1 mouse_genomes_project 16 6530332 6565807 - Grin2a protein_coding processed_transcript MGP_CASTEiJ_T0042897.1 MGP_CASTEiJ_G0021761.1 mouse_genomes_project 16 6763428 6766024 - Grin2a protein_coding retained_intron MGP_CASTEiJ_T0042898.1 MGP_CASTEiJ_G0021761.1 mouse_genomes_project 16 6763428 6767314 - Grin2a protein_coding retained_intron MGP_CASTEiJ_T0099480.1 MGP_CASTEiJ_G0036393.1 mouse_genomes_project 16 14210804 14210911 - Gm22129 snRNA snRNA MGP_CASTEiJ_T0043819.1 MGP_CASTEiJ_G0021978.1 mouse_genomes_project 16 29124368 29148295 - MGP_CASTEiJ_P0043819 Ppp1r2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043820.1 MGP_CASTEiJ_G0021978.1 mouse_genomes_project 16 29128843 29148170 - MGP_CASTEiJ_P0043820 Ppp1r2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043821.1 MGP_CASTEiJ_G0021978.1 mouse_genomes_project 16 29128853 29148049 - MGP_CASTEiJ_P0043821 Ppp1r2 protein_coding protein_coding MGP_CASTEiJ_T0044011.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32060094 32186276 - MGP_CASTEiJ_P0044011 protein_coding protein_coding MGP_CASTEiJ_T0044012.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32060999 32064669 - protein_coding retained_intron MGP_CASTEiJ_T0044013.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32061331 32567774 - MGP_CASTEiJ_P0044013 protein_coding protein_coding MGP_CASTEiJ_T0044014.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32102131 32186169 - MGP_CASTEiJ_P0044014 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044015.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32103357 32259889 - MGP_CASTEiJ_P0044015 protein_coding protein_coding MGP_CASTEiJ_T0044016.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32103362 32187379 - MGP_CASTEiJ_P0044016 protein_coding protein_coding MGP_CASTEiJ_T0044017.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32103362 32505128 - MGP_CASTEiJ_P0044017 protein_coding protein_coding MGP_CASTEiJ_T0044018.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32103371 32186317 - MGP_CASTEiJ_P0044018 protein_coding protein_coding MGP_CASTEiJ_T0044019.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32137057 32689659 - MGP_CASTEiJ_P0044019 protein_coding protein_coding MGP_CASTEiJ_T0044020.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32247024 32624853 - MGP_CASTEiJ_P0044020 protein_coding protein_coding MGP_CASTEiJ_T0044021.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32247025 32369559 - MGP_CASTEiJ_P0044021 protein_coding protein_coding MGP_CASTEiJ_T0044022.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32247035 32624891 - MGP_CASTEiJ_P0044022 protein_coding protein_coding MGP_CASTEiJ_T0044023.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32247095 32369324 - MGP_CASTEiJ_P0044023 protein_coding protein_coding MGP_CASTEiJ_T0044024.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32250017 32369552 - MGP_CASTEiJ_P0044024 protein_coding protein_coding MGP_CASTEiJ_T0044025.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32250084 32624749 - MGP_CASTEiJ_P0044025 protein_coding protein_coding MGP_CASTEiJ_T0044026.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32274528 32369198 - MGP_CASTEiJ_P0044026 protein_coding protein_coding MGP_CASTEiJ_T0044027.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32323261 32369269 - protein_coding retained_intron MGP_CASTEiJ_T0044028.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32348777 32358692 - protein_coding processed_transcript MGP_CASTEiJ_T0044029.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32468960 32474772 - protein_coding processed_transcript MGP_CASTEiJ_T0044030.1 MGP_CASTEiJ_G0022021.1 mouse_genomes_project 16 32623538 32624920 - protein_coding processed_transcript MGP_CASTEiJ_T0100712.1 MGP_CASTEiJ_G0037625.1 mouse_genomes_project 16 20615229 20615368 + Gm24616 snoRNA snoRNA MGP_CASTEiJ_T0016784.1 MGP_CASTEiJ_G0014645.1 mouse_genomes_project 16 93990235 94006096 - 1810053B23Rik processed_transcript lincRNA MGP_CASTEiJ_T0016785.1 MGP_CASTEiJ_G0014645.1 mouse_genomes_project 16 93990679 94000525 - 1810053B23Rik processed_transcript lincRNA MGP_CASTEiJ_T0016786.1 MGP_CASTEiJ_G0014645.1 mouse_genomes_project 16 93991230 94001403 - 1810053B23Rik processed_transcript lincRNA MGP_CASTEiJ_T0016787.1 MGP_CASTEiJ_G0014645.1 mouse_genomes_project 16 93991699 94001413 - 1810053B23Rik processed_transcript lincRNA MGP_CASTEiJ_T0016788.1 MGP_CASTEiJ_G0014645.1 mouse_genomes_project 16 93993011 94006935 - 1810053B23Rik processed_transcript retained_intron MGP_CASTEiJ_T0016789.1 MGP_CASTEiJ_G0014645.1 mouse_genomes_project 16 93993743 94006903 - 1810053B23Rik processed_transcript retained_intron MGP_CASTEiJ_T0042810.1 MGP_CASTEiJ_G0021739.1 mouse_genomes_project 16 1539654 1552119 - MGP_CASTEiJ_P0042810 Sept12 protein_coding protein_coding MGP_CASTEiJ_T0012759.1 MGP_CASTEiJ_G0010922.1 mouse_genomes_project 16 13836044 13836289 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003563.1 MGP_CASTEiJ_G0003231.1 mouse_genomes_project 16 39822038 39841998 - Gm28750 antisense antisense MGP_CASTEiJ_T0012788.1 MGP_CASTEiJ_G0010951.1 mouse_genomes_project 16 34107117 34107390 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0043734.1 MGP_CASTEiJ_G0021955.1 mouse_genomes_project 16 24175361 24199452 - MGP_CASTEiJ_P0043734 Tmem207 protein_coding protein_coding MGP_CASTEiJ_T0044595.1 MGP_CASTEiJ_G0022170.1 mouse_genomes_project 16 57918590 57919566 - MGP_CASTEiJ_P0044595 protein_coding protein_coding MGP_CASTEiJ_T0012797.1 MGP_CASTEiJ_G0010960.1 mouse_genomes_project 16 41671318 41672474 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000921.1 MGP_CASTEiJ_G0000859.1 mouse_genomes_project 16 57324358 57326667 - TEC TEC MGP_CASTEiJ_T0044859.1 MGP_CASTEiJ_G0022278.1 mouse_genomes_project 16 91169401 91186140 + Mrap protein_coding processed_transcript MGP_CASTEiJ_T0044860.1 MGP_CASTEiJ_G0022278.1 mouse_genomes_project 16 91169401 91185650 + Mrap protein_coding processed_transcript MGP_CASTEiJ_T0044861.1 MGP_CASTEiJ_G0022278.1 mouse_genomes_project 16 91169401 91182801 + Mrap protein_coding processed_transcript MGP_CASTEiJ_T0044862.1 MGP_CASTEiJ_G0022278.1 mouse_genomes_project 16 91169401 91186140 + MGP_CASTEiJ_P0044862 Mrap protein_coding protein_coding MGP_CASTEiJ_T0044055.1 MGP_CASTEiJ_G0022031.1 mouse_genomes_project 16 33944106 34004523 + MGP_CASTEiJ_P0044055 Hspbap1 protein_coding protein_coding MGP_CASTEiJ_T0006676.1 MGP_CASTEiJ_G0005522.1 mouse_genomes_project 16 47876365 47934975 - 1700026J12Rik lincRNA lincRNA MGP_CASTEiJ_T0006677.1 MGP_CASTEiJ_G0005522.1 mouse_genomes_project 16 47876392 47934975 - 1700026J12Rik lincRNA lincRNA MGP_CASTEiJ_T0102099.1 MGP_CASTEiJ_G0038824.1 mouse_genomes_project 16 10895478 10900447 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099495.1 MGP_CASTEiJ_G0036408.1 mouse_genomes_project 16 34594865 34594969 + Gm22263 snRNA snRNA MGP_CASTEiJ_T0043231.1 MGP_CASTEiJ_G0021840.1 mouse_genomes_project 16 14512699 14533827 + MGP_CASTEiJ_P0043231 Aifm3 protein_coding protein_coding MGP_CASTEiJ_T0043232.1 MGP_CASTEiJ_G0021840.1 mouse_genomes_project 16 14512732 14531109 + MGP_CASTEiJ_P0043232 Aifm3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043233.1 MGP_CASTEiJ_G0021840.1 mouse_genomes_project 16 14512751 14533827 + MGP_CASTEiJ_P0043233 Aifm3 protein_coding protein_coding MGP_CASTEiJ_T0043234.1 MGP_CASTEiJ_G0021840.1 mouse_genomes_project 16 14512935 14531754 + Aifm3 protein_coding retained_intron MGP_CASTEiJ_T0043235.1 MGP_CASTEiJ_G0021840.1 mouse_genomes_project 16 14526031 14533823 + Aifm3 protein_coding retained_intron MGP_CASTEiJ_T0043236.1 MGP_CASTEiJ_G0021840.1 mouse_genomes_project 16 14528571 14530028 + Aifm3 protein_coding retained_intron MGP_CASTEiJ_T0043237.1 MGP_CASTEiJ_G0021840.1 mouse_genomes_project 16 14529215 14532267 + Aifm3 protein_coding retained_intron MGP_CASTEiJ_T0043878.1 MGP_CASTEiJ_G0021990.1 mouse_genomes_project 16 30073652 30094900 - MGP_CASTEiJ_P0043878 Nrros protein_coding protein_coding MGP_CASTEiJ_T0043879.1 MGP_CASTEiJ_G0021990.1 mouse_genomes_project 16 30073662 30094872 - MGP_CASTEiJ_P0043879 Nrros protein_coding protein_coding MGP_CASTEiJ_T0043880.1 MGP_CASTEiJ_G0021990.1 mouse_genomes_project 16 30073662 30078752 - MGP_CASTEiJ_P0043880 Nrros protein_coding protein_coding MGP_CASTEiJ_T0043881.1 MGP_CASTEiJ_G0021990.1 mouse_genomes_project 16 30073692 30094791 - MGP_CASTEiJ_P0043881 Nrros protein_coding protein_coding MGP_CASTEiJ_T0043882.1 MGP_CASTEiJ_G0021990.1 mouse_genomes_project 16 30073692 30094809 - MGP_CASTEiJ_P0043882 Nrros protein_coding protein_coding MGP_CASTEiJ_T0043883.1 MGP_CASTEiJ_G0021990.1 mouse_genomes_project 16 30075549 30094909 - MGP_CASTEiJ_P0043883 Nrros protein_coding protein_coding MGP_CASTEiJ_T0043884.1 MGP_CASTEiJ_G0021990.1 mouse_genomes_project 16 30075682 30094791 - Nrros protein_coding processed_transcript MGP_CASTEiJ_T0043885.1 MGP_CASTEiJ_G0021990.1 mouse_genomes_project 16 30075694 30078945 - Nrros protein_coding processed_transcript MGP_CASTEiJ_T0043886.1 MGP_CASTEiJ_G0021990.1 mouse_genomes_project 16 30075741 30094797 - MGP_CASTEiJ_P0043886 Nrros protein_coding protein_coding MGP_CASTEiJ_T0043887.1 MGP_CASTEiJ_G0021990.1 mouse_genomes_project 16 30078422 30094772 - Nrros protein_coding processed_transcript MGP_CASTEiJ_T0009860.1 MGP_CASTEiJ_G0008048.1 mouse_genomes_project 16 20614365 20614471 + miRNA miRNA MGP_CASTEiJ_T0043054.1 MGP_CASTEiJ_G0021799.1 mouse_genomes_project 16 10961228 10966687 - MGP_CASTEiJ_P0043054 Ifitm7 protein_coding protein_coding MGP_CASTEiJ_T0043055.1 MGP_CASTEiJ_G0021799.1 mouse_genomes_project 16 10962351 10964220 - MGP_CASTEiJ_P0043055 Ifitm7 protein_coding protein_coding MGP_CASTEiJ_T0003528.1 MGP_CASTEiJ_G0003202.1 mouse_genomes_project 16 380729 382276 - Gm15537 antisense antisense MGP_CASTEiJ_T0042710.1 MGP_CASTEiJ_G0021717.1 mouse_genomes_project 16 400752 433218 - MGP_CASTEiJ_P0042710 Nlrc3 protein_coding protein_coding MGP_CASTEiJ_T0042711.1 MGP_CASTEiJ_G0021717.1 mouse_genomes_project 16 401355 433305 - MGP_CASTEiJ_P0042711 Nlrc3 protein_coding protein_coding MGP_CASTEiJ_T0042712.1 MGP_CASTEiJ_G0021717.1 mouse_genomes_project 16 404090 433305 - Nlrc3 protein_coding retained_intron MGP_CASTEiJ_T0042713.1 MGP_CASTEiJ_G0021717.1 mouse_genomes_project 16 404099 420235 - Nlrc3 protein_coding retained_intron MGP_CASTEiJ_T0009858.1 MGP_CASTEiJ_G0008046.1 mouse_genomes_project 16 19966917 19967046 - Mir8095 miRNA miRNA MGP_CASTEiJ_T0042852.1 MGP_CASTEiJ_G0021750.1 mouse_genomes_project 16 3466957 4097185 + MGP_CASTEiJ_P0042852 Rbfox1 protein_coding protein_coding MGP_CASTEiJ_T0042853.1 MGP_CASTEiJ_G0021750.1 mouse_genomes_project 16 3743196 4100310 + MGP_CASTEiJ_P0042853 Rbfox1 protein_coding protein_coding MGP_CASTEiJ_T0042854.1 MGP_CASTEiJ_G0021750.1 mouse_genomes_project 16 3896421 4100314 + MGP_CASTEiJ_P0042854 Rbfox1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043420.1 MGP_CASTEiJ_G0021874.1 mouse_genomes_project 16 15694480 15699740 - MGP_CASTEiJ_P0043420 Tbx1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043421.1 MGP_CASTEiJ_G0021874.1 mouse_genomes_project 16 15694484 15699723 - MGP_CASTEiJ_P0043421 Tbx1 protein_coding protein_coding MGP_CASTEiJ_T0043762.1 MGP_CASTEiJ_G0021965.1 mouse_genomes_project 16 27148992 27202945 - MGP_CASTEiJ_P0043762 Atp13a4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043763.1 MGP_CASTEiJ_G0021965.1 mouse_genomes_project 16 27149167 27284338 - MGP_CASTEiJ_P0043763 Atp13a4 protein_coding protein_coding MGP_CASTEiJ_T0043764.1 MGP_CASTEiJ_G0021965.1 mouse_genomes_project 16 27149180 27284224 - MGP_CASTEiJ_P0043764 Atp13a4 protein_coding protein_coding MGP_CASTEiJ_T0043765.1 MGP_CASTEiJ_G0021965.1 mouse_genomes_project 16 27149185 27164741 - Atp13a4 protein_coding processed_transcript MGP_CASTEiJ_T0043766.1 MGP_CASTEiJ_G0021965.1 mouse_genomes_project 16 27149235 27288477 - MGP_CASTEiJ_P0043766 Atp13a4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043767.1 MGP_CASTEiJ_G0021965.1 mouse_genomes_project 16 27149561 27162192 - Atp13a4 protein_coding retained_intron MGP_CASTEiJ_T0043768.1 MGP_CASTEiJ_G0021965.1 mouse_genomes_project 16 27165083 27190142 - Atp13a4 protein_coding retained_intron MGP_CASTEiJ_T0043769.1 MGP_CASTEiJ_G0021965.1 mouse_genomes_project 16 27177158 27191183 - MGP_CASTEiJ_P0043769 Atp13a4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043770.1 MGP_CASTEiJ_G0021965.1 mouse_genomes_project 16 27177167 27288477 - MGP_CASTEiJ_P0043770 Atp13a4 protein_coding protein_coding MGP_CASTEiJ_T0043771.1 MGP_CASTEiJ_G0021965.1 mouse_genomes_project 16 27283164 27288411 - Atp13a4 protein_coding retained_intron MGP_CASTEiJ_T0043772.1 MGP_CASTEiJ_G0021965.1 mouse_genomes_project 16 27283217 27288472 - Atp13a4 protein_coding retained_intron MGP_CASTEiJ_T0044033.1 MGP_CASTEiJ_G0022023.1 mouse_genomes_project 16 32810205 32847880 + MGP_CASTEiJ_P0044033 Ccdc14 protein_coding protein_coding MGP_CASTEiJ_T0006647.1 MGP_CASTEiJ_G0005496.1 mouse_genomes_project 16 7863177 7869051 + Gm4262 lincRNA lincRNA MGP_CASTEiJ_T0012822.1 MGP_CASTEiJ_G0010985.1 mouse_genomes_project 16 91358583 91359135 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044590.1 MGP_CASTEiJ_G0022167.1 mouse_genomes_project 16 57833371 57836529 - MGP_CASTEiJ_P0044590 Olfr175-ps1 protein_coding protein_coding MGP_CASTEiJ_T0042914.1 MGP_CASTEiJ_G0021767.1 mouse_genomes_project 16 7224480 7256719 - MGP_CASTEiJ_P0042914 Tvp23a protein_coding protein_coding MGP_CASTEiJ_T0042916.1 MGP_CASTEiJ_G0021767.1 mouse_genomes_project 16 7227209 7256494 - MGP_CASTEiJ_P0042916 Tvp23a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042917.1 MGP_CASTEiJ_G0021767.1 mouse_genomes_project 16 7228175 7256676 - Tvp23a protein_coding processed_transcript MGP_CASTEiJ_T0042918.1 MGP_CASTEiJ_G0021767.1 mouse_genomes_project 16 7229831 7233126 - Tvp23a protein_coding processed_transcript MGP_CASTEiJ_T0042919.1 MGP_CASTEiJ_G0021767.1 mouse_genomes_project 16 7231010 7233202 - Tvp23a protein_coding processed_transcript MGP_CASTEiJ_T0044474.1 MGP_CASTEiJ_G0022132.1 mouse_genomes_project 16 49334850 49336146 - MGP_CASTEiJ_P0044474 Ccdc54 protein_coding protein_coding MGP_CASTEiJ_T0044135.1 MGP_CASTEiJ_G0022052.1 mouse_genomes_project 16 35137889 35171331 + MGP_CASTEiJ_P0044135 Hcls1 protein_coding protein_coding MGP_CASTEiJ_T0044136.1 MGP_CASTEiJ_G0022052.1 mouse_genomes_project 16 35140193 35169654 + MGP_CASTEiJ_P0044136 Hcls1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044137.1 MGP_CASTEiJ_G0022052.1 mouse_genomes_project 16 35162852 35164745 + Hcls1 protein_coding retained_intron MGP_CASTEiJ_T0044659.1 MGP_CASTEiJ_G0022199.1 mouse_genomes_project 16 64726056 64738599 + MGP_CASTEiJ_P0044659 Pou1f1 protein_coding protein_coding MGP_CASTEiJ_T0044660.1 MGP_CASTEiJ_G0022199.1 mouse_genomes_project 16 64726057 64729961 + Pou1f1 protein_coding retained_intron MGP_CASTEiJ_T0044661.1 MGP_CASTEiJ_G0022199.1 mouse_genomes_project 16 64726057 64738987 + MGP_CASTEiJ_P0044661 Pou1f1 protein_coding protein_coding MGP_CASTEiJ_T0044662.1 MGP_CASTEiJ_G0022199.1 mouse_genomes_project 16 64726093 64738547 + MGP_CASTEiJ_P0044662 Pou1f1 protein_coding protein_coding MGP_CASTEiJ_T0044663.1 MGP_CASTEiJ_G0022199.1 mouse_genomes_project 16 64727700 64738408 + MGP_CASTEiJ_P0044663 Pou1f1 protein_coding protein_coding MGP_CASTEiJ_T0044540.1 MGP_CASTEiJ_G0022148.1 mouse_genomes_project 16 55729616 55808585 - MGP_CASTEiJ_P0044540 Adgrg7 protein_coding protein_coding MGP_CASTEiJ_T0042796.1 MGP_CASTEiJ_G0021733.1 mouse_genomes_project 16 1378324 1395923 + MGP_CASTEiJ_P0042796 4930562C15Rik protein_coding non_stop_decay MGP_CASTEiJ_T0042797.1 MGP_CASTEiJ_G0021733.1 mouse_genomes_project 16 1378324 1409596 + MGP_CASTEiJ_P0042797 4930562C15Rik protein_coding protein_coding MGP_CASTEiJ_T0042798.1 MGP_CASTEiJ_G0021733.1 mouse_genomes_project 16 1384201 1395929 + MGP_CASTEiJ_P0042798 4930562C15Rik protein_coding non_stop_decay MGP_CASTEiJ_T0042799.1 MGP_CASTEiJ_G0021733.1 mouse_genomes_project 16 1394532 1402411 + MGP_CASTEiJ_P0042799 4930562C15Rik protein_coding protein_coding MGP_CASTEiJ_T0042800.1 MGP_CASTEiJ_G0021733.1 mouse_genomes_project 16 1402921 1409254 + MGP_CASTEiJ_P0042800 4930562C15Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042801.1 MGP_CASTEiJ_G0021733.1 mouse_genomes_project 16 1406151 1407007 + 4930562C15Rik protein_coding retained_intron MGP_CASTEiJ_T0043732.1 MGP_CASTEiJ_G0021954.1 mouse_genomes_project 16 24135422 24156280 + MGP_CASTEiJ_P0043732 Cldn16 protein_coding protein_coding MGP_CASTEiJ_T0043733.1 MGP_CASTEiJ_G0021954.1 mouse_genomes_project 16 24135543 24156278 + MGP_CASTEiJ_P0043733 Cldn16 protein_coding protein_coding MGP_CASTEiJ_T0045066.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164679 95271812 + MGP_CASTEiJ_P0045066 Ttc3 protein_coding protein_coding MGP_CASTEiJ_T0045067.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164800 95238626 + MGP_CASTEiJ_P0045067 Ttc3 protein_coding protein_coding MGP_CASTEiJ_T0045068.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164804 95199568 + Ttc3 protein_coding retained_intron MGP_CASTEiJ_T0045069.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164804 95230301 + MGP_CASTEiJ_P0045069 Ttc3 protein_coding protein_coding MGP_CASTEiJ_T0045070.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164807 95238631 + MGP_CASTEiJ_P0045070 Ttc3 protein_coding protein_coding MGP_CASTEiJ_T0045071.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164810 95214539 + MGP_CASTEiJ_P0045071 Ttc3 protein_coding protein_coding MGP_CASTEiJ_T0045072.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164811 95192179 + MGP_CASTEiJ_P0045072 Ttc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045073.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164812 95212184 + Ttc3 protein_coding processed_transcript MGP_CASTEiJ_T0045074.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164812 95218161 + MGP_CASTEiJ_P0045074 Ttc3 protein_coding protein_coding MGP_CASTEiJ_T0045075.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164812 95214467 + MGP_CASTEiJ_P0045075 Ttc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045076.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164818 95238638 + MGP_CASTEiJ_P0045076 Ttc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045077.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164828 95205535 + Ttc3 protein_coding processed_transcript MGP_CASTEiJ_T0045078.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164828 95183346 + MGP_CASTEiJ_P0045078 Ttc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045079.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164828 95186249 + MGP_CASTEiJ_P0045079 Ttc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045080.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164828 95238628 + MGP_CASTEiJ_P0045080 Ttc3 protein_coding protein_coding MGP_CASTEiJ_T0045081.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164841 95211783 + MGP_CASTEiJ_P0045081 Ttc3 protein_coding protein_coding MGP_CASTEiJ_T0045082.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164842 95238638 + MGP_CASTEiJ_P0045082 Ttc3 protein_coding protein_coding MGP_CASTEiJ_T0045083.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164842 95238638 + MGP_CASTEiJ_P0045083 Ttc3 protein_coding protein_coding MGP_CASTEiJ_T0045084.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164857 95223886 + MGP_CASTEiJ_P0045084 Ttc3 protein_coding protein_coding MGP_CASTEiJ_T0045085.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164858 95206669 + MGP_CASTEiJ_P0045085 Ttc3 protein_coding protein_coding MGP_CASTEiJ_T0045086.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164858 95199104 + MGP_CASTEiJ_P0045086 Ttc3 protein_coding protein_coding MGP_CASTEiJ_T0045087.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164859 95207926 + Ttc3 protein_coding processed_transcript MGP_CASTEiJ_T0045088.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164859 95192423 + MGP_CASTEiJ_P0045088 Ttc3 protein_coding protein_coding MGP_CASTEiJ_T0045089.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95164884 95216126 + MGP_CASTEiJ_P0045089 Ttc3 protein_coding protein_coding MGP_CASTEiJ_T0045090.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95220956 95229109 + MGP_CASTEiJ_P0045090 Ttc3 protein_coding protein_coding MGP_CASTEiJ_T0045091.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95236032 95246731 + Ttc3 protein_coding retained_intron MGP_CASTEiJ_T0045092.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95249096 95258056 + MGP_CASTEiJ_P0045092 Ttc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045093.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95255370 95270585 + Ttc3 protein_coding retained_intron MGP_CASTEiJ_T0045094.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95266397 95271475 + Ttc3 protein_coding retained_intron MGP_CASTEiJ_T0045095.1 MGP_CASTEiJ_G0022321.1 mouse_genomes_project 16 95267743 95270808 + Ttc3 protein_coding retained_intron MGP_CASTEiJ_T0043699.1 MGP_CASTEiJ_G0021942.1 mouse_genomes_project 16 20739873 20891745 + MGP_CASTEiJ_P0043699 St6gal1 protein_coding protein_coding MGP_CASTEiJ_T0043700.1 MGP_CASTEiJ_G0021942.1 mouse_genomes_project 16 20741145 20848939 + St6gal1 protein_coding processed_transcript MGP_CASTEiJ_T0043701.1 MGP_CASTEiJ_G0021942.1 mouse_genomes_project 16 20741145 20891747 + MGP_CASTEiJ_P0043701 St6gal1 protein_coding protein_coding MGP_CASTEiJ_T0043702.1 MGP_CASTEiJ_G0021942.1 mouse_genomes_project 16 20795123 20849047 + MGP_CASTEiJ_P0043702 St6gal1 protein_coding protein_coding MGP_CASTEiJ_T0043703.1 MGP_CASTEiJ_G0021942.1 mouse_genomes_project 16 20817168 20889977 + MGP_CASTEiJ_P0043703 St6gal1 protein_coding protein_coding MGP_CASTEiJ_T0043704.1 MGP_CASTEiJ_G0021942.1 mouse_genomes_project 16 20889695 20891745 + St6gal1 protein_coding processed_transcript MGP_CASTEiJ_T0043629.1 MGP_CASTEiJ_G0021924.1 mouse_genomes_project 16 19317781 19324540 - MGP_CASTEiJ_P0043629 Tmem41a protein_coding protein_coding MGP_CASTEiJ_T0042899.1 MGP_CASTEiJ_G0021762.1 mouse_genomes_project 16 6956537 6960935 + MGP_CASTEiJ_P0042899 Rpl39l protein_coding protein_coding MGP_CASTEiJ_T0042900.1 MGP_CASTEiJ_G0021762.1 mouse_genomes_project 16 6956539 6961216 + MGP_CASTEiJ_P0042900 Rpl39l protein_coding protein_coding MGP_CASTEiJ_T0006686.1 MGP_CASTEiJ_G0005527.1 mouse_genomes_project 16 56183831 56191475 + Gm16892 lincRNA lincRNA MGP_CASTEiJ_T0043128.1 MGP_CASTEiJ_G0021821.1 mouse_genomes_project 16 13848879 13852183 - MGP_CASTEiJ_P0043128 Igll1 protein_coding protein_coding MGP_CASTEiJ_T0043129.1 MGP_CASTEiJ_G0021821.1 mouse_genomes_project 16 13848879 13852015 - MGP_CASTEiJ_P0043129 Igll1 protein_coding protein_coding MGP_CASTEiJ_T0043130.1 MGP_CASTEiJ_G0021821.1 mouse_genomes_project 16 13848882 13852183 - Igll1 protein_coding retained_intron MGP_CASTEiJ_T0044271.1 MGP_CASTEiJ_G0022085.1 mouse_genomes_project 16 42257668 42326675 + MGP_CASTEiJ_P0044271 Drd3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044272.1 MGP_CASTEiJ_G0022085.1 mouse_genomes_project 16 42265663 42326768 + MGP_CASTEiJ_P0044272 Drd3 protein_coding protein_coding MGP_CASTEiJ_T0043326.1 MGP_CASTEiJ_G0021857.1 mouse_genomes_project 16 14974149 14976117 - MGP_CASTEiJ_P0043326 Gsc2 protein_coding protein_coding MGP_CASTEiJ_T0006646.1 MGP_CASTEiJ_G0005495.1 mouse_genomes_project 16 7754136 7758670 - Gm21859 lincRNA lincRNA MGP_CASTEiJ_T0012740.1 MGP_CASTEiJ_G0010903.1 mouse_genomes_project 16 379346 379659 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0042769.1 MGP_CASTEiJ_G0021728.1 mouse_genomes_project 16 1161187 1171969 + MGP_CASTEiJ_P0042769 Vasn protein_coding protein_coding MGP_CASTEiJ_T0042770.1 MGP_CASTEiJ_G0021728.1 mouse_genomes_project 16 1161214 1168723 + Vasn protein_coding processed_transcript MGP_CASTEiJ_T0098535.1 MGP_CASTEiJ_G0035466.1 mouse_genomes_project 16 98500576 98500682 - Gm24777 rRNA rRNA MGP_CASTEiJ_T0044797.1 MGP_CASTEiJ_G0022239.1 mouse_genomes_project 16 88864930 88866502 - MGP_CASTEiJ_P0044797 Krtap24-1 protein_coding protein_coding MGP_CASTEiJ_T0044733.1 MGP_CASTEiJ_G0022222.1 mouse_genomes_project 16 84878015 84936655 + MGP_CASTEiJ_P0044733 Jam2 protein_coding protein_coding MGP_CASTEiJ_T0044734.1 MGP_CASTEiJ_G0022222.1 mouse_genomes_project 16 84878278 84920381 + MGP_CASTEiJ_P0044734 Jam2 protein_coding protein_coding MGP_CASTEiJ_T0044735.1 MGP_CASTEiJ_G0022222.1 mouse_genomes_project 16 84918788 84933614 + Jam2 protein_coding processed_transcript MGP_CASTEiJ_T0000922.1 MGP_CASTEiJ_G0000860.1 mouse_genomes_project 16 75858063 75859652 + TEC TEC MGP_CASTEiJ_T0043705.1 MGP_CASTEiJ_G0021943.1 mouse_genomes_project 16 20966711 20971564 + MGP_CASTEiJ_P0043705 Rtp1 protein_coding protein_coding MGP_CASTEiJ_T0043706.1 MGP_CASTEiJ_G0021943.1 mouse_genomes_project 16 20966817 20971575 + MGP_CASTEiJ_P0043706 Rtp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0098845.1 MGP_CASTEiJ_G0035771.1 mouse_genomes_project 16 2580261 2604870 + 1700123O21Rik sense_intronic sense_intronic MGP_CASTEiJ_T0003548.1 MGP_CASTEiJ_G0003220.1 mouse_genomes_project 16 30778243 30781960 + Gm26769 antisense antisense MGP_CASTEiJ_T0003558.1 MGP_CASTEiJ_G0003226.1 mouse_genomes_project 16 34381888 34414552 - antisense antisense MGP_CASTEiJ_T0099479.1 MGP_CASTEiJ_G0036392.1 mouse_genomes_project 16 13996713 13996808 - Gm22558 snRNA snRNA MGP_CASTEiJ_T0042907.1 MGP_CASTEiJ_G0021765.1 mouse_genomes_project 16 7165680 7204462 - MGP_CASTEiJ_P0042907 Tekt5 protein_coding protein_coding MGP_CASTEiJ_T0042908.1 MGP_CASTEiJ_G0021765.1 mouse_genomes_project 16 7169968 7204420 - MGP_CASTEiJ_P0042908 Tekt5 protein_coding protein_coding MGP_CASTEiJ_T0003547.1 MGP_CASTEiJ_G0003219.1 mouse_genomes_project 16 30625447 30628418 - Tnk2os antisense antisense MGP_CASTEiJ_T0003540.1 MGP_CASTEiJ_G0003213.1 mouse_genomes_project 16 14153786 14154857 + Gm15648 antisense antisense MGP_CASTEiJ_T0012776.1 MGP_CASTEiJ_G0010939.1 mouse_genomes_project 16 20712740 20713799 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045056.1 MGP_CASTEiJ_G0022318.1 mouse_genomes_project 16 94918919 95101211 - MGP_CASTEiJ_P0045056 Hlcs protein_coding protein_coding MGP_CASTEiJ_T0045057.1 MGP_CASTEiJ_G0022318.1 mouse_genomes_project 16 94919030 95075552 - MGP_CASTEiJ_P0045057 Hlcs protein_coding protein_coding MGP_CASTEiJ_T0044044.1 MGP_CASTEiJ_G0022028.1 mouse_genomes_project 16 33553843 33644648 - MGP_CASTEiJ_P0044044 Pdia5 protein_coding protein_coding MGP_CASTEiJ_T0098349.1 MGP_CASTEiJ_G0035280.1 mouse_genomes_project 16 58039792 58040669 - pseudogene pseudogene MGP_CASTEiJ_T0003529.1 MGP_CASTEiJ_G0003203.1 mouse_genomes_project 16 502164 505645 - Gm15879 antisense antisense MGP_CASTEiJ_T0043822.1 MGP_CASTEiJ_G0021979.1 mouse_genomes_project 16 29172474 29193087 - MGP_CASTEiJ_P0043822 Apod protein_coding protein_coding MGP_CASTEiJ_T0043823.1 MGP_CASTEiJ_G0021979.1 mouse_genomes_project 16 29173330 29193083 - MGP_CASTEiJ_P0043823 Apod protein_coding protein_coding MGP_CASTEiJ_T0043824.1 MGP_CASTEiJ_G0021979.1 mouse_genomes_project 16 29173364 29192873 - Apod protein_coding retained_intron MGP_CASTEiJ_T0043825.1 MGP_CASTEiJ_G0021979.1 mouse_genomes_project 16 29173626 29181708 - Apod protein_coding retained_intron MGP_CASTEiJ_T0043826.1 MGP_CASTEiJ_G0021979.1 mouse_genomes_project 16 29173719 29181941 - Apod protein_coding retained_intron MGP_CASTEiJ_T0043827.1 MGP_CASTEiJ_G0021979.1 mouse_genomes_project 16 29181767 29189627 - Apod protein_coding retained_intron MGP_CASTEiJ_T0043559.1 MGP_CASTEiJ_G0021911.1 mouse_genomes_project 16 17914430 17921580 + MGP_CASTEiJ_P0043559 Psmd2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043560.1 MGP_CASTEiJ_G0021911.1 mouse_genomes_project 16 17914438 17931355 + MGP_CASTEiJ_P0043560 Psmd2 protein_coding protein_coding MGP_CASTEiJ_T0043561.1 MGP_CASTEiJ_G0021911.1 mouse_genomes_project 16 17914490 17931355 + MGP_CASTEiJ_P0043561 Psmd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043562.1 MGP_CASTEiJ_G0021911.1 mouse_genomes_project 16 17914502 17915541 + Psmd2 protein_coding processed_transcript MGP_CASTEiJ_T0043563.1 MGP_CASTEiJ_G0021911.1 mouse_genomes_project 16 17925440 17926150 + Psmd2 protein_coding processed_transcript MGP_CASTEiJ_T0043564.1 MGP_CASTEiJ_G0021911.1 mouse_genomes_project 16 17925785 17926802 + Psmd2 protein_coding processed_transcript MGP_CASTEiJ_T0043565.1 MGP_CASTEiJ_G0021911.1 mouse_genomes_project 16 17925852 17928548 + Psmd2 protein_coding processed_transcript MGP_CASTEiJ_T0016775.1 MGP_CASTEiJ_G0014638.1 mouse_genomes_project 16 87645552 87654511 + B130034C11Rik processed_transcript retained_intron MGP_CASTEiJ_T0016776.1 MGP_CASTEiJ_G0014638.1 mouse_genomes_project 16 87645626 87654714 + B130034C11Rik processed_transcript processed_transcript MGP_CASTEiJ_T0003561.1 MGP_CASTEiJ_G0003229.1 mouse_genomes_project 16 36863501 36869526 - Gm17103 antisense antisense MGP_CASTEiJ_T0044764.1 MGP_CASTEiJ_G0022231.1 mouse_genomes_project 16 87579235 87587187 - MGP_CASTEiJ_P0044764 Rwdd2b protein_coding protein_coding MGP_CASTEiJ_T0044765.1 MGP_CASTEiJ_G0022231.1 mouse_genomes_project 16 87582512 87587187 - Rwdd2b protein_coding processed_transcript MGP_CASTEiJ_T0044604.1 MGP_CASTEiJ_G0022174.1 mouse_genomes_project 16 58025095 58029064 - MGP_CASTEiJ_P0044604 Olfr187 protein_coding protein_coding MGP_CASTEiJ_T0044605.1 MGP_CASTEiJ_G0022174.1 mouse_genomes_project 16 58025095 58026073 - MGP_CASTEiJ_P0044605 Olfr187 protein_coding protein_coding MGP_CASTEiJ_T0044606.1 MGP_CASTEiJ_G0022174.1 mouse_genomes_project 16 58025620 58029082 - MGP_CASTEiJ_P0044606 Olfr187 protein_coding protein_coding MGP_CASTEiJ_T0042807.1 MGP_CASTEiJ_G0021736.1 mouse_genomes_project 16 1490036 1491950 + MGP_CASTEiJ_P0042807 Nudt16l1 protein_coding protein_coding MGP_CASTEiJ_T0098848.1 MGP_CASTEiJ_G0035774.1 mouse_genomes_project 16 28829046 28833291 - Gm15742 sense_intronic sense_intronic MGP_CASTEiJ_T0011075.1 MGP_CASTEiJ_G0009263.1 mouse_genomes_project 16 17698563 17698839 + Gm23332 misc_RNA misc_RNA MGP_CASTEiJ_T0045034.1 MGP_CASTEiJ_G0022314.1 mouse_genomes_project 16 94591081 94639196 + MGP_CASTEiJ_P0045034 Morc3 protein_coding protein_coding MGP_CASTEiJ_T0045035.1 MGP_CASTEiJ_G0022314.1 mouse_genomes_project 16 94591081 94639193 + MGP_CASTEiJ_P0045035 Morc3 protein_coding protein_coding MGP_CASTEiJ_T0045036.1 MGP_CASTEiJ_G0022314.1 mouse_genomes_project 16 94591195 94604928 + Morc3 protein_coding retained_intron MGP_CASTEiJ_T0045037.1 MGP_CASTEiJ_G0022314.1 mouse_genomes_project 16 94591217 94638149 + MGP_CASTEiJ_P0045037 Morc3 protein_coding protein_coding MGP_CASTEiJ_T0045038.1 MGP_CASTEiJ_G0022314.1 mouse_genomes_project 16 94591223 94620577 + MGP_CASTEiJ_P0045038 Morc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045039.1 MGP_CASTEiJ_G0022314.1 mouse_genomes_project 16 94604810 94609327 + Morc3 protein_coding processed_transcript MGP_CASTEiJ_T0045040.1 MGP_CASTEiJ_G0022314.1 mouse_genomes_project 16 94613872 94616039 + Morc3 protein_coding retained_intron MGP_CASTEiJ_T0043263.1 MGP_CASTEiJ_G0021845.1 mouse_genomes_project 16 14601934 14605650 - Slc7a4 protein_coding retained_intron MGP_CASTEiJ_T0043264.1 MGP_CASTEiJ_G0021845.1 mouse_genomes_project 16 14602255 14604912 - MGP_CASTEiJ_P0043264 Slc7a4 protein_coding protein_coding MGP_CASTEiJ_T0043265.1 MGP_CASTEiJ_G0021845.1 mouse_genomes_project 16 14604381 14605610 - MGP_CASTEiJ_P0043265 Slc7a4 protein_coding protein_coding MGP_CASTEiJ_T0043266.1 MGP_CASTEiJ_G0021845.1 mouse_genomes_project 16 14604491 14605199 - MGP_CASTEiJ_P0043266 Slc7a4 protein_coding protein_coding MGP_CASTEiJ_T0043267.1 MGP_CASTEiJ_G0021845.1 mouse_genomes_project 16 14604667 14605650 - MGP_CASTEiJ_P0043267 Slc7a4 protein_coding protein_coding MGP_CASTEiJ_T0045032.1 MGP_CASTEiJ_G0022313.1 mouse_genomes_project 16 94448601 94560766 + MGP_CASTEiJ_P0045032 Dopey2 protein_coding protein_coding MGP_CASTEiJ_T0045033.1 MGP_CASTEiJ_G0022313.1 mouse_genomes_project 16 94448617 94560528 + MGP_CASTEiJ_P0045033 Dopey2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009864.1 MGP_CASTEiJ_G0008052.1 mouse_genomes_project 16 30195637 30195771 - Mir1946a miRNA miRNA MGP_CASTEiJ_T0043457.1 MGP_CASTEiJ_G0021886.1 mouse_genomes_project 16 16659197 16660139 - MGP_CASTEiJ_P0043457 protein_coding protein_coding MGP_CASTEiJ_T0011078.1 MGP_CASTEiJ_G0009266.1 mouse_genomes_project 16 34689199 34689517 - Gm25902 misc_RNA misc_RNA MGP_CASTEiJ_T0044283.1 MGP_CASTEiJ_G0022087.1 mouse_genomes_project 16 42395695 42470594 + MGP_CASTEiJ_P0044283 Ccdc191 protein_coding protein_coding MGP_CASTEiJ_T0044284.1 MGP_CASTEiJ_G0022087.1 mouse_genomes_project 16 42395794 42445297 + MGP_CASTEiJ_P0044284 Ccdc191 protein_coding protein_coding MGP_CASTEiJ_T0044285.1 MGP_CASTEiJ_G0022087.1 mouse_genomes_project 16 42395797 42470594 + MGP_CASTEiJ_P0044285 Ccdc191 protein_coding protein_coding MGP_CASTEiJ_T0044286.1 MGP_CASTEiJ_G0022087.1 mouse_genomes_project 16 42395835 42415549 + MGP_CASTEiJ_P0044286 Ccdc191 protein_coding protein_coding MGP_CASTEiJ_T0044287.1 MGP_CASTEiJ_G0022087.1 mouse_genomes_project 16 42444733 42449278 + Ccdc191 protein_coding processed_transcript MGP_CASTEiJ_T0044288.1 MGP_CASTEiJ_G0022087.1 mouse_genomes_project 16 42444854 42470594 + MGP_CASTEiJ_P0044288 Ccdc191 protein_coding protein_coding MGP_CASTEiJ_T0043532.1 MGP_CASTEiJ_G0021907.1 mouse_genomes_project 16 17849789 17858787 + MGP_CASTEiJ_P0043532 Vwa5b2 protein_coding protein_coding MGP_CASTEiJ_T0043533.1 MGP_CASTEiJ_G0021907.1 mouse_genomes_project 16 17849900 17851059 + Vwa5b2 protein_coding processed_transcript MGP_CASTEiJ_T0043534.1 MGP_CASTEiJ_G0021907.1 mouse_genomes_project 16 17849900 17866868 + MGP_CASTEiJ_P0043534 Vwa5b2 protein_coding protein_coding MGP_CASTEiJ_T0043535.1 MGP_CASTEiJ_G0021907.1 mouse_genomes_project 16 17849902 17851501 + Vwa5b2 protein_coding processed_transcript MGP_CASTEiJ_T0043536.1 MGP_CASTEiJ_G0021907.1 mouse_genomes_project 16 17850169 17851535 + Vwa5b2 protein_coding retained_intron MGP_CASTEiJ_T0043537.1 MGP_CASTEiJ_G0021907.1 mouse_genomes_project 16 17850260 17866874 + MGP_CASTEiJ_P0043537 Vwa5b2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043538.1 MGP_CASTEiJ_G0021907.1 mouse_genomes_project 16 17850377 17850854 + Vwa5b2 protein_coding retained_intron MGP_CASTEiJ_T0043539.1 MGP_CASTEiJ_G0021907.1 mouse_genomes_project 16 17850408 17852705 + Vwa5b2 protein_coding retained_intron MGP_CASTEiJ_T0043540.1 MGP_CASTEiJ_G0021907.1 mouse_genomes_project 16 17850464 17858782 + MGP_CASTEiJ_P0043540 Vwa5b2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043541.1 MGP_CASTEiJ_G0021907.1 mouse_genomes_project 16 17851470 17866865 + MGP_CASTEiJ_P0043541 Vwa5b2 protein_coding protein_coding MGP_CASTEiJ_T0043542.1 MGP_CASTEiJ_G0021907.1 mouse_genomes_project 16 17864276 17866868 + Vwa5b2 protein_coding retained_intron MGP_CASTEiJ_T0100735.1 MGP_CASTEiJ_G0037648.1 mouse_genomes_project 16 60181454 60181531 + Gm23852 snoRNA snoRNA MGP_CASTEiJ_T0012808.1 MGP_CASTEiJ_G0010971.1 mouse_genomes_project 16 59492044 59492445 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0098532.1 MGP_CASTEiJ_G0035463.1 mouse_genomes_project 16 47045874 47045993 - n-R5s36 rRNA rRNA MGP_CASTEiJ_T0099510.1 MGP_CASTEiJ_G0036423.1 mouse_genomes_project 16 80643014 80643113 + Gm24773 snRNA snRNA MGP_CASTEiJ_T0044548.1 MGP_CASTEiJ_G0022153.1 mouse_genomes_project 16 56185296 56244291 - MGP_CASTEiJ_P0044548 Tbc1d23 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044549.1 MGP_CASTEiJ_G0022153.1 mouse_genomes_project 16 56185301 56244240 - MGP_CASTEiJ_P0044549 Tbc1d23 protein_coding protein_coding MGP_CASTEiJ_T0012798.1 MGP_CASTEiJ_G0010961.1 mouse_genomes_project 16 43346447 43346739 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044396.1 MGP_CASTEiJ_G0022111.1 mouse_genomes_project 16 44203944 44242783 - MGP_CASTEiJ_P0044396 Tmprss7 protein_coding protein_coding MGP_CASTEiJ_T0044397.1 MGP_CASTEiJ_G0022111.1 mouse_genomes_project 16 44203946 44234433 - Tmprss7 protein_coding processed_transcript MGP_CASTEiJ_T0044398.1 MGP_CASTEiJ_G0022111.1 mouse_genomes_project 16 44203970 44238732 - Tmprss7 protein_coding processed_transcript MGP_CASTEiJ_T0044399.1 MGP_CASTEiJ_G0022111.1 mouse_genomes_project 16 44232449 44235550 - Tmprss7 protein_coding processed_transcript MGP_CASTEiJ_T0044400.1 MGP_CASTEiJ_G0022111.1 mouse_genomes_project 16 44232563 44235555 - Tmprss7 protein_coding retained_intron MGP_CASTEiJ_T0044061.1 MGP_CASTEiJ_G0022034.1 mouse_genomes_project 16 34127327 34157880 + MGP_CASTEiJ_P0044061 Parp9 protein_coding protein_coding MGP_CASTEiJ_T0044062.1 MGP_CASTEiJ_G0022034.1 mouse_genomes_project 16 34127345 34132120 + Parp9 protein_coding retained_intron MGP_CASTEiJ_T0044063.1 MGP_CASTEiJ_G0022034.1 mouse_genomes_project 16 34127376 34136338 + MGP_CASTEiJ_P0044063 Parp9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044064.1 MGP_CASTEiJ_G0022034.1 mouse_genomes_project 16 34128776 34162262 + MGP_CASTEiJ_P0044064 Parp9 protein_coding protein_coding MGP_CASTEiJ_T0044065.1 MGP_CASTEiJ_G0022034.1 mouse_genomes_project 16 34129334 34136573 + Parp9 protein_coding processed_transcript MGP_CASTEiJ_T0044066.1 MGP_CASTEiJ_G0022034.1 mouse_genomes_project 16 34136935 34145494 + MGP_CASTEiJ_P0044066 Parp9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044618.1 MGP_CASTEiJ_G0022185.1 mouse_genomes_project 16 58433810 58492491 + MGP_CASTEiJ_P0044618 Gabrr3 protein_coding protein_coding MGP_CASTEiJ_T0044323.1 MGP_CASTEiJ_G0022095.1 mouse_genomes_project 16 42919245 42928619 + Cfap44 protein_coding retained_intron MGP_CASTEiJ_T0044324.1 MGP_CASTEiJ_G0022095.1 mouse_genomes_project 16 42919248 43014530 + MGP_CASTEiJ_P0044324 Cfap44 protein_coding protein_coding MGP_CASTEiJ_T0044325.1 MGP_CASTEiJ_G0022095.1 mouse_genomes_project 16 42919271 42925682 + Cfap44 protein_coding retained_intron MGP_CASTEiJ_T0044326.1 MGP_CASTEiJ_G0022095.1 mouse_genomes_project 16 42925108 43014201 + MGP_CASTEiJ_P0044326 Cfap44 protein_coding protein_coding MGP_CASTEiJ_T0044327.1 MGP_CASTEiJ_G0022095.1 mouse_genomes_project 16 42932409 42958864 + Cfap44 protein_coding retained_intron MGP_CASTEiJ_T0044328.1 MGP_CASTEiJ_G0022095.1 mouse_genomes_project 16 42960853 42965984 + Cfap44 protein_coding processed_transcript MGP_CASTEiJ_T0044329.1 MGP_CASTEiJ_G0022095.1 mouse_genomes_project 16 42985498 43014201 + MGP_CASTEiJ_P0044329 Cfap44 protein_coding protein_coding MGP_CASTEiJ_T0044330.1 MGP_CASTEiJ_G0022095.1 mouse_genomes_project 16 42999715 43014530 + Cfap44 protein_coding retained_intron MGP_CASTEiJ_T0099489.1 MGP_CASTEiJ_G0036402.1 mouse_genomes_project 16 22022088 22022151 - Gm24440 snRNA snRNA MGP_CASTEiJ_T0003555.1 MGP_CASTEiJ_G0003225.1 mouse_genomes_project 16 34156107 34171382 - Gm15564 antisense antisense MGP_CASTEiJ_T0003556.1 MGP_CASTEiJ_G0003225.1 mouse_genomes_project 16 34156108 34173544 - Gm15564 antisense antisense MGP_CASTEiJ_T0003557.1 MGP_CASTEiJ_G0003225.1 mouse_genomes_project 16 34156130 34171442 - Gm15564 antisense antisense MGP_CASTEiJ_T0042684.1 MGP_CASTEiJ_G0021712.1 mouse_genomes_project 16 307722 315213 - Zfp597 protein_coding processed_transcript MGP_CASTEiJ_T0042685.1 MGP_CASTEiJ_G0021712.1 mouse_genomes_project 16 310918 322009 - MGP_CASTEiJ_P0042685 Zfp597 protein_coding protein_coding MGP_CASTEiJ_T0042686.1 MGP_CASTEiJ_G0021712.1 mouse_genomes_project 16 311772 337247 - Zfp597 protein_coding processed_transcript MGP_CASTEiJ_T0042687.1 MGP_CASTEiJ_G0021712.1 mouse_genomes_project 16 314678 337303 - Zfp597 protein_coding processed_transcript MGP_CASTEiJ_T0042688.1 MGP_CASTEiJ_G0021712.1 mouse_genomes_project 16 315977 321356 - Zfp597 protein_coding retained_intron MGP_CASTEiJ_T0044600.1 MGP_CASTEiJ_G0022172.1 mouse_genomes_project 16 57986238 57991471 + MGP_CASTEiJ_P0044600 Olfr183 protein_coding protein_coding MGP_CASTEiJ_T0044601.1 MGP_CASTEiJ_G0022172.1 mouse_genomes_project 16 57986257 57991007 + MGP_CASTEiJ_P0044601 Olfr183 protein_coding protein_coding MGP_CASTEiJ_T0012775.1 MGP_CASTEiJ_G0010938.1 mouse_genomes_project 16 20685393 20685850 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0042760.1 MGP_CASTEiJ_G0021727.1 mouse_genomes_project 16 1145563 1206566 - MGP_CASTEiJ_P0042760 Coro7 protein_coding protein_coding MGP_CASTEiJ_T0042761.1 MGP_CASTEiJ_G0021727.1 mouse_genomes_project 16 1146811 1148314 - Coro7 protein_coding processed_transcript MGP_CASTEiJ_T0042762.1 MGP_CASTEiJ_G0021727.1 mouse_genomes_project 16 1148194 1149103 - Coro7 protein_coding retained_intron MGP_CASTEiJ_T0042763.1 MGP_CASTEiJ_G0021727.1 mouse_genomes_project 16 1148501 1206467 - MGP_CASTEiJ_P0042763 Coro7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042764.1 MGP_CASTEiJ_G0021727.1 mouse_genomes_project 16 1151304 1153629 - Coro7 protein_coding retained_intron MGP_CASTEiJ_T0042765.1 MGP_CASTEiJ_G0021727.1 mouse_genomes_project 16 1151672 1154806 - Coro7 protein_coding retained_intron MGP_CASTEiJ_T0042766.1 MGP_CASTEiJ_G0021727.1 mouse_genomes_project 16 1153046 1167889 - Coro7 protein_coding processed_transcript MGP_CASTEiJ_T0042767.1 MGP_CASTEiJ_G0021727.1 mouse_genomes_project 16 1153093 1154812 - Coro7 protein_coding retained_intron MGP_CASTEiJ_T0042768.1 MGP_CASTEiJ_G0021727.1 mouse_genomes_project 16 1154368 1184910 - Coro7 protein_coding retained_intron MGP_CASTEiJ_T0042772.1 MGP_CASTEiJ_G0021727.1 mouse_genomes_project 16 1173746 1206566 - MGP_CASTEiJ_P0042772 Coro7 protein_coding protein_coding MGP_CASTEiJ_T0042773.1 MGP_CASTEiJ_G0021727.1 mouse_genomes_project 16 1176165 1210819 - MGP_CASTEiJ_P0042773 Coro7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042774.1 MGP_CASTEiJ_G0021727.1 mouse_genomes_project 16 1183259 1206502 - Coro7 protein_coding retained_intron MGP_CASTEiJ_T0042775.1 MGP_CASTEiJ_G0021727.1 mouse_genomes_project 16 1200235 1206531 - Coro7 protein_coding retained_intron MGP_CASTEiJ_T0006670.1 MGP_CASTEiJ_G0005516.1 mouse_genomes_project 16 33658475 33664680 - 1600019K03Rik lincRNA lincRNA MGP_CASTEiJ_T0098531.1 MGP_CASTEiJ_G0035462.1 mouse_genomes_project 16 39613397 39613489 + Gm26381 rRNA rRNA MGP_CASTEiJ_T0042771.1 MGP_CASTEiJ_G0021729.1 mouse_genomes_project 16 1161235 1215215 + Dnaja3 protein_coding processed_transcript MGP_CASTEiJ_T0042776.1 MGP_CASTEiJ_G0021729.1 mouse_genomes_project 16 1210906 1239505 + MGP_CASTEiJ_P0042776 Dnaja3 protein_coding protein_coding MGP_CASTEiJ_T0042777.1 MGP_CASTEiJ_G0021729.1 mouse_genomes_project 16 1210932 1239505 + MGP_CASTEiJ_P0042777 Dnaja3 protein_coding protein_coding MGP_CASTEiJ_T0042778.1 MGP_CASTEiJ_G0021729.1 mouse_genomes_project 16 1210950 1224950 + Dnaja3 protein_coding retained_intron MGP_CASTEiJ_T0045009.1 MGP_CASTEiJ_G0022305.1 mouse_genomes_project 16 92870582 92873258 - MGP_CASTEiJ_P0045009 4930563D23Rik protein_coding protein_coding MGP_CASTEiJ_T0044786.1 MGP_CASTEiJ_G0022234.1 mouse_genomes_project 16 87709019 87754412 + MGP_CASTEiJ_P0044786 Map3k7cl protein_coding protein_coding MGP_CASTEiJ_T0043983.1 MGP_CASTEiJ_G0022012.1 mouse_genomes_project 16 31052699 31123706 + MGP_CASTEiJ_P0043983 Lmln protein_coding protein_coding MGP_CASTEiJ_T0043984.1 MGP_CASTEiJ_G0022012.1 mouse_genomes_project 16 31084049 31099441 + Lmln protein_coding retained_intron MGP_CASTEiJ_T0043985.1 MGP_CASTEiJ_G0022012.1 mouse_genomes_project 16 31112824 31119923 + Lmln protein_coding retained_intron MGP_CASTEiJ_T0043986.1 MGP_CASTEiJ_G0022012.1 mouse_genomes_project 16 31120276 31121612 + Lmln protein_coding processed_transcript MGP_CASTEiJ_T0044498.1 MGP_CASTEiJ_G0022141.1 mouse_genomes_project 16 54963868 54999232 + MGP_CASTEiJ_P0044498 Zbtb11 protein_coding protein_coding MGP_CASTEiJ_T0044499.1 MGP_CASTEiJ_G0022141.1 mouse_genomes_project 16 54978405 54981758 + Zbtb11 protein_coding retained_intron MGP_CASTEiJ_T0044500.1 MGP_CASTEiJ_G0022141.1 mouse_genomes_project 16 54995509 54999232 + Zbtb11 protein_coding retained_intron MGP_CASTEiJ_T0101857.1 MGP_CASTEiJ_G0038600.1 mouse_genomes_project 16 17689329 17695503 + unitary_pseudogene unitary_pseudogene MGP_CASTEiJ_T0006674.1 MGP_CASTEiJ_G0005520.1 mouse_genomes_project 16 41905526 41915739 - Gm15713 lincRNA lincRNA MGP_CASTEiJ_T0043859.1 MGP_CASTEiJ_G0021986.1 mouse_genomes_project 16 29873236 29920917 - MGP_CASTEiJ_P0043859 protein_coding protein_coding MGP_CASTEiJ_T0043860.1 MGP_CASTEiJ_G0021986.1 mouse_genomes_project 16 29874248 29902058 - MGP_CASTEiJ_P0043860 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043861.1 MGP_CASTEiJ_G0021986.1 mouse_genomes_project 16 29887113 29903233 - MGP_CASTEiJ_P0043861 protein_coding protein_coding MGP_CASTEiJ_T0043862.1 MGP_CASTEiJ_G0021986.1 mouse_genomes_project 16 29889685 29920808 - protein_coding retained_intron MGP_CASTEiJ_T0099045.1 MGP_CASTEiJ_G0035960.1 mouse_genomes_project 16 93034705 93057573 + 2410124H12Rik sense_overlapping sense_overlapping MGP_CASTEiJ_T0102103.1 MGP_CASTEiJ_G0038828.1 mouse_genomes_project 16 57953253 57953824 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045059.1 MGP_CASTEiJ_G0022320.1 mouse_genomes_project 16 95152936 95164351 - MGP_CASTEiJ_P0045059 Pigp protein_coding protein_coding MGP_CASTEiJ_T0045060.1 MGP_CASTEiJ_G0022320.1 mouse_genomes_project 16 95158507 95166099 - MGP_CASTEiJ_P0045060 Pigp protein_coding protein_coding MGP_CASTEiJ_T0045061.1 MGP_CASTEiJ_G0022320.1 mouse_genomes_project 16 95158507 95166099 - MGP_CASTEiJ_P0045061 Pigp protein_coding protein_coding MGP_CASTEiJ_T0045062.1 MGP_CASTEiJ_G0022320.1 mouse_genomes_project 16 95158507 95164774 - MGP_CASTEiJ_P0045062 Pigp protein_coding protein_coding MGP_CASTEiJ_T0045063.1 MGP_CASTEiJ_G0022320.1 mouse_genomes_project 16 95158507 95164756 - MGP_CASTEiJ_P0045063 Pigp protein_coding protein_coding MGP_CASTEiJ_T0045064.1 MGP_CASTEiJ_G0022320.1 mouse_genomes_project 16 95158512 95159577 - Pigp protein_coding processed_transcript MGP_CASTEiJ_T0045065.1 MGP_CASTEiJ_G0022320.1 mouse_genomes_project 16 95158766 95164571 - MGP_CASTEiJ_P0045065 Pigp protein_coding protein_coding MGP_CASTEiJ_T0045175.1 MGP_CASTEiJ_G0022336.1 mouse_genomes_project 16 97304495 97365637 + MGP_CASTEiJ_P0045175 Igsf5 protein_coding protein_coding MGP_CASTEiJ_T0045176.1 MGP_CASTEiJ_G0022336.1 mouse_genomes_project 16 97304621 97350760 + MGP_CASTEiJ_P0045176 Igsf5 protein_coding protein_coding MGP_CASTEiJ_T0045177.1 MGP_CASTEiJ_G0022336.1 mouse_genomes_project 16 97304621 97350763 + MGP_CASTEiJ_P0045177 Igsf5 protein_coding protein_coding MGP_CASTEiJ_T0045178.1 MGP_CASTEiJ_G0022336.1 mouse_genomes_project 16 97304621 97474161 + MGP_CASTEiJ_P0045178 Igsf5 protein_coding protein_coding MGP_CASTEiJ_T0045179.1 MGP_CASTEiJ_G0022336.1 mouse_genomes_project 16 97332007 97350061 + Igsf5 protein_coding processed_transcript MGP_CASTEiJ_T0045180.1 MGP_CASTEiJ_G0022336.1 mouse_genomes_project 16 97342157 97365470 + MGP_CASTEiJ_P0045180 Igsf5 protein_coding protein_coding MGP_CASTEiJ_T0044596.1 MGP_CASTEiJ_G0022171.1 mouse_genomes_project 16 57921009 57924023 - MGP_CASTEiJ_P0044596 Olfr181 protein_coding protein_coding MGP_CASTEiJ_T0044597.1 MGP_CASTEiJ_G0022171.1 mouse_genomes_project 16 57921009 57922113 - MGP_CASTEiJ_P0044597 Olfr181 protein_coding protein_coding MGP_CASTEiJ_T0044598.1 MGP_CASTEiJ_G0022171.1 mouse_genomes_project 16 57921637 57924023 - MGP_CASTEiJ_P0044598 Olfr181 protein_coding protein_coding MGP_CASTEiJ_T0044599.1 MGP_CASTEiJ_G0022171.1 mouse_genomes_project 16 57921785 57923987 - MGP_CASTEiJ_P0044599 Olfr181 protein_coding protein_coding MGP_CASTEiJ_T0009855.1 MGP_CASTEiJ_G0008043.1 mouse_genomes_project 16 16588420 16588530 + Gm23612 miRNA miRNA MGP_CASTEiJ_T0044438.1 MGP_CASTEiJ_G0022124.1 mouse_genomes_project 16 47511773 47513682 + MGP_CASTEiJ_P0044438 Retnla protein_coding protein_coding MGP_CASTEiJ_T0012751.1 MGP_CASTEiJ_G0010914.1 mouse_genomes_project 16 11019591 11020099 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0043790.1 MGP_CASTEiJ_G0021972.1 mouse_genomes_project 16 28116326 28200007 - MGP_CASTEiJ_P0043790 Atp13a3 protein_coding protein_coding MGP_CASTEiJ_T0043791.1 MGP_CASTEiJ_G0021972.1 mouse_genomes_project 16 28116326 28200007 - MGP_CASTEiJ_P0043791 Atp13a3 protein_coding protein_coding MGP_CASTEiJ_T0043792.1 MGP_CASTEiJ_G0021972.1 mouse_genomes_project 16 28161012 28165331 - Atp13a3 protein_coding retained_intron MGP_CASTEiJ_T0043793.1 MGP_CASTEiJ_G0021972.1 mouse_genomes_project 16 28170696 28199962 - Atp13a3 protein_coding retained_intron MGP_CASTEiJ_T0043794.1 MGP_CASTEiJ_G0021972.1 mouse_genomes_project 16 28197362 28200314 - Atp13a3 protein_coding retained_intron MGP_CASTEiJ_T0012756.1 MGP_CASTEiJ_G0010919.1 mouse_genomes_project 16 13332556 13333548 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006643.1 MGP_CASTEiJ_G0005492.1 mouse_genomes_project 16 311772 337247 + Gm26675 lincRNA lincRNA MGP_CASTEiJ_T0044078.1 MGP_CASTEiJ_G0022038.1 mouse_genomes_project 16 34269193 34292673 + MGP_CASTEiJ_P0044078 Ccdc58 protein_coding protein_coding MGP_CASTEiJ_T0044079.1 MGP_CASTEiJ_G0022038.1 mouse_genomes_project 16 34269193 34292673 + MGP_CASTEiJ_P0044079 Ccdc58 protein_coding protein_coding MGP_CASTEiJ_T0044080.1 MGP_CASTEiJ_G0022038.1 mouse_genomes_project 16 34281621 34292673 + MGP_CASTEiJ_P0044080 Ccdc58 protein_coding protein_coding MGP_CASTEiJ_T0043641.1 MGP_CASTEiJ_G0021928.1 mouse_genomes_project 16 19657306 19664231 - Tra2b protein_coding retained_intron MGP_CASTEiJ_T0043642.1 MGP_CASTEiJ_G0021928.1 mouse_genomes_project 16 19657583 19677465 - MGP_CASTEiJ_P0043642 Tra2b protein_coding protein_coding MGP_CASTEiJ_T0043643.1 MGP_CASTEiJ_G0021928.1 mouse_genomes_project 16 19666237 19671332 - Tra2b protein_coding processed_transcript MGP_CASTEiJ_T0043644.1 MGP_CASTEiJ_G0021928.1 mouse_genomes_project 16 19669773 19677607 - Tra2b protein_coding retained_intron MGP_CASTEiJ_T0043461.1 MGP_CASTEiJ_G0021889.1 mouse_genomes_project 16 16761813 16762752 - MGP_CASTEiJ_P0043461 Olfr167 protein_coding protein_coding MGP_CASTEiJ_T0044719.1 MGP_CASTEiJ_G0022215.1 mouse_genomes_project 16 78168074 78188892 - MGP_CASTEiJ_P0044719 protein_coding protein_coding MGP_CASTEiJ_T0044432.1 MGP_CASTEiJ_G0022119.1 mouse_genomes_project 16 46894268 46907170 + MGP_CASTEiJ_P0044432 Dppa4 protein_coding protein_coding MGP_CASTEiJ_T0044433.1 MGP_CASTEiJ_G0022119.1 mouse_genomes_project 16 46894268 46907170 + MGP_CASTEiJ_P0044433 Dppa4 protein_coding protein_coding MGP_CASTEiJ_T0043773.1 MGP_CASTEiJ_G0021966.1 mouse_genomes_project 16 27326752 27402901 + MGP_CASTEiJ_P0043773 Opa1 protein_coding protein_coding MGP_CASTEiJ_T0043774.1 MGP_CASTEiJ_G0021966.1 mouse_genomes_project 16 27326796 27362667 + Opa1 protein_coding retained_intron MGP_CASTEiJ_T0043775.1 MGP_CASTEiJ_G0021966.1 mouse_genomes_project 16 27326798 27399898 + MGP_CASTEiJ_P0043775 Opa1 protein_coding protein_coding MGP_CASTEiJ_T0043776.1 MGP_CASTEiJ_G0021966.1 mouse_genomes_project 16 27326798 27378082 + MGP_CASTEiJ_P0043776 Opa1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043777.1 MGP_CASTEiJ_G0021966.1 mouse_genomes_project 16 27326798 27396605 + MGP_CASTEiJ_P0043777 Opa1 protein_coding protein_coding MGP_CASTEiJ_T0043778.1 MGP_CASTEiJ_G0021966.1 mouse_genomes_project 16 27326810 27399901 + Opa1 protein_coding retained_intron MGP_CASTEiJ_T0043779.1 MGP_CASTEiJ_G0021966.1 mouse_genomes_project 16 27326921 27402349 + MGP_CASTEiJ_P0043779 Opa1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043780.1 MGP_CASTEiJ_G0021966.1 mouse_genomes_project 16 27332944 27358754 + MGP_CASTEiJ_P0043780 Opa1 protein_coding protein_coding MGP_CASTEiJ_T0043781.1 MGP_CASTEiJ_G0021966.1 mouse_genomes_project 16 27364666 27366762 + Opa1 protein_coding retained_intron MGP_CASTEiJ_T0006673.1 MGP_CASTEiJ_G0005519.1 mouse_genomes_project 16 41839632 41857407 - Gm9968 lincRNA lincRNA MGP_CASTEiJ_T0045201.1 MGP_CASTEiJ_G0022345.1 mouse_genomes_project 16 98804744 98867785 - MGP_CASTEiJ_P0045201 Prdm15 protein_coding protein_coding MGP_CASTEiJ_T0045202.1 MGP_CASTEiJ_G0022345.1 mouse_genomes_project 16 98804797 98868408 - MGP_CASTEiJ_P0045202 Prdm15 protein_coding protein_coding MGP_CASTEiJ_T0045203.1 MGP_CASTEiJ_G0022345.1 mouse_genomes_project 16 98805154 98868341 - MGP_CASTEiJ_P0045203 Prdm15 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045204.1 MGP_CASTEiJ_G0022345.1 mouse_genomes_project 16 98805608 98813597 - Prdm15 protein_coding retained_intron MGP_CASTEiJ_T0045205.1 MGP_CASTEiJ_G0022345.1 mouse_genomes_project 16 98807456 98856518 - MGP_CASTEiJ_P0045205 Prdm15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045206.1 MGP_CASTEiJ_G0022345.1 mouse_genomes_project 16 98807794 98817393 - Prdm15 protein_coding processed_transcript MGP_CASTEiJ_T0045207.1 MGP_CASTEiJ_G0022345.1 mouse_genomes_project 16 98809017 98811215 - Prdm15 protein_coding retained_intron MGP_CASTEiJ_T0045208.1 MGP_CASTEiJ_G0022345.1 mouse_genomes_project 16 98834352 98846270 - Prdm15 protein_coding retained_intron MGP_CASTEiJ_T0045209.1 MGP_CASTEiJ_G0022345.1 mouse_genomes_project 16 98851924 98856526 - Prdm15 protein_coding retained_intron MGP_CASTEiJ_T0045210.1 MGP_CASTEiJ_G0022345.1 mouse_genomes_project 16 98852342 98865441 - MGP_CASTEiJ_P0045210 Prdm15 protein_coding protein_coding MGP_CASTEiJ_T0045211.1 MGP_CASTEiJ_G0022345.1 mouse_genomes_project 16 98854239 98867785 - MGP_CASTEiJ_P0045211 Prdm15 protein_coding protein_coding MGP_CASTEiJ_T0044664.1 MGP_CASTEiJ_G0022200.1 mouse_genomes_project 16 64740417 64765961 - MGP_CASTEiJ_P0044664 Chmp2b protein_coding unknown_likely_coding MGP_CASTEiJ_T0044665.1 MGP_CASTEiJ_G0022200.1 mouse_genomes_project 16 64743110 64766122 - MGP_CASTEiJ_P0044665 Chmp2b protein_coding protein_coding MGP_CASTEiJ_T0043795.1 MGP_CASTEiJ_G0021973.1 mouse_genomes_project 16 28339351 28381396 - Tmem44 protein_coding retained_intron MGP_CASTEiJ_T0043796.1 MGP_CASTEiJ_G0021973.1 mouse_genomes_project 16 28339351 28382020 - MGP_CASTEiJ_P0043796 Tmem44 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043797.1 MGP_CASTEiJ_G0021973.1 mouse_genomes_project 16 28341174 28382028 - MGP_CASTEiJ_P0043797 Tmem44 protein_coding protein_coding MGP_CASTEiJ_T0043798.1 MGP_CASTEiJ_G0021973.1 mouse_genomes_project 16 28341176 28382028 - MGP_CASTEiJ_P0043798 Tmem44 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043799.1 MGP_CASTEiJ_G0021973.1 mouse_genomes_project 16 28341453 28372029 - MGP_CASTEiJ_P0043799 Tmem44 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043800.1 MGP_CASTEiJ_G0021973.1 mouse_genomes_project 16 28342197 28381949 - MGP_CASTEiJ_P0043800 Tmem44 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043801.1 MGP_CASTEiJ_G0021973.1 mouse_genomes_project 16 28344976 28381989 - Tmem44 protein_coding retained_intron MGP_CASTEiJ_T0043802.1 MGP_CASTEiJ_G0021973.1 mouse_genomes_project 16 28345357 28382292 - Tmem44 protein_coding retained_intron MGP_CASTEiJ_T0043803.1 MGP_CASTEiJ_G0021973.1 mouse_genomes_project 16 28374787 28381978 - Tmem44 protein_coding processed_transcript MGP_CASTEiJ_T0044084.1 MGP_CASTEiJ_G0022041.1 mouse_genomes_project 16 34414117 34426108 + MGP_CASTEiJ_P0044084 Gm5416 protein_coding protein_coding MGP_CASTEiJ_T0099508.1 MGP_CASTEiJ_G0036421.1 mouse_genomes_project 16 65456277 65456384 + Gm22448 snRNA snRNA MGP_CASTEiJ_T0000928.1 MGP_CASTEiJ_G0000865.1 mouse_genomes_project 16 77199753 77202332 - TEC TEC MGP_CASTEiJ_T0102097.1 MGP_CASTEiJ_G0038822.1 mouse_genomes_project 16 73303 74243 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000914.1 MGP_CASTEiJ_G0000852.1 mouse_genomes_project 16 16438152 16441640 + TEC TEC MGP_CASTEiJ_T0043586.1 MGP_CASTEiJ_G0021913.1 mouse_genomes_project 16 17964860 17976631 + MGP_CASTEiJ_P0043586 Fam131a protein_coding protein_coding MGP_CASTEiJ_T0043587.1 MGP_CASTEiJ_G0021913.1 mouse_genomes_project 16 17964865 17970897 + MGP_CASTEiJ_P0043587 Fam131a protein_coding protein_coding MGP_CASTEiJ_T0043588.1 MGP_CASTEiJ_G0021913.1 mouse_genomes_project 16 17966524 17976631 + MGP_CASTEiJ_P0043588 Fam131a protein_coding protein_coding MGP_CASTEiJ_T0043589.1 MGP_CASTEiJ_G0021913.1 mouse_genomes_project 16 17967785 17975238 + MGP_CASTEiJ_P0043589 Fam131a protein_coding protein_coding MGP_CASTEiJ_T0044067.1 MGP_CASTEiJ_G0022035.1 mouse_genomes_project 16 34173628 34234050 + MGP_CASTEiJ_P0044067 Kpna1 protein_coding protein_coding MGP_CASTEiJ_T0044068.1 MGP_CASTEiJ_G0022035.1 mouse_genomes_project 16 34173638 34189678 + Kpna1 protein_coding retained_intron MGP_CASTEiJ_T0044069.1 MGP_CASTEiJ_G0022035.1 mouse_genomes_project 16 34173667 34205003 + MGP_CASTEiJ_P0044069 Kpna1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044070.1 MGP_CASTEiJ_G0022035.1 mouse_genomes_project 16 34187327 34187892 + Kpna1 protein_coding retained_intron MGP_CASTEiJ_T0044071.1 MGP_CASTEiJ_G0022035.1 mouse_genomes_project 16 34187327 34207360 + MGP_CASTEiJ_P0044071 Kpna1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044072.1 MGP_CASTEiJ_G0022035.1 mouse_genomes_project 16 34187327 34230824 + MGP_CASTEiJ_P0044072 Kpna1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044073.1 MGP_CASTEiJ_G0022035.1 mouse_genomes_project 16 34199498 34232048 + MGP_CASTEiJ_P0044073 Kpna1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044074.1 MGP_CASTEiJ_G0022035.1 mouse_genomes_project 16 34205102 34230784 + MGP_CASTEiJ_P0044074 Kpna1 protein_coding protein_coding MGP_CASTEiJ_T0044075.1 MGP_CASTEiJ_G0022035.1 mouse_genomes_project 16 34207358 34228643 + Kpna1 protein_coding retained_intron MGP_CASTEiJ_T0044629.1 MGP_CASTEiJ_G0022188.1 mouse_genomes_project 16 58649552 58678659 - MGP_CASTEiJ_P0044629 Arl6 protein_coding protein_coding MGP_CASTEiJ_T0044630.1 MGP_CASTEiJ_G0022188.1 mouse_genomes_project 16 58649931 58678883 - MGP_CASTEiJ_P0044630 Arl6 protein_coding protein_coding MGP_CASTEiJ_T0044631.1 MGP_CASTEiJ_G0022188.1 mouse_genomes_project 16 58650208 58671993 - MGP_CASTEiJ_P0044631 Arl6 protein_coding protein_coding MGP_CASTEiJ_T0044632.1 MGP_CASTEiJ_G0022188.1 mouse_genomes_project 16 58660229 58678621 - MGP_CASTEiJ_P0044632 Arl6 protein_coding protein_coding MGP_CASTEiJ_T0000938.1 MGP_CASTEiJ_G0000875.1 mouse_genomes_project 16 91722385 91723186 + TEC TEC MGP_CASTEiJ_T0043787.1 MGP_CASTEiJ_G0021969.1 mouse_genomes_project 16 28059110 28070268 - MGP_CASTEiJ_P0043787 Cpn2 protein_coding protein_coding MGP_CASTEiJ_T0042938.1 MGP_CASTEiJ_G0021773.1 mouse_genomes_project 16 7624780 7625190 - MGP_CASTEiJ_P0042938 Prm3 protein_coding protein_coding MGP_CASTEiJ_T0043511.1 MGP_CASTEiJ_G0021904.1 mouse_genomes_project 16 17777696 17791965 + MGP_CASTEiJ_P0043511 Dvl3 protein_coding protein_coding MGP_CASTEiJ_T0043512.1 MGP_CASTEiJ_G0021904.1 mouse_genomes_project 16 17777735 17791972 + MGP_CASTEiJ_P0043512 Dvl3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043513.1 MGP_CASTEiJ_G0021904.1 mouse_genomes_project 16 17777778 17792834 + MGP_CASTEiJ_P0043513 Dvl3 protein_coding protein_coding MGP_CASTEiJ_T0043514.1 MGP_CASTEiJ_G0021904.1 mouse_genomes_project 16 17777820 17791961 + MGP_CASTEiJ_P0043514 Dvl3 protein_coding protein_coding MGP_CASTEiJ_T0043515.1 MGP_CASTEiJ_G0021904.1 mouse_genomes_project 16 17777900 17785627 + Dvl3 protein_coding retained_intron MGP_CASTEiJ_T0012780.1 MGP_CASTEiJ_G0010943.1 mouse_genomes_project 16 27030059 27030453 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044306.1 MGP_CASTEiJ_G0022092.1 mouse_genomes_project 16 42684435 42729443 + protein_coding retained_intron MGP_CASTEiJ_T0044307.1 MGP_CASTEiJ_G0022092.1 mouse_genomes_project 16 42684435 42726779 + MGP_CASTEiJ_P0044307 protein_coding protein_coding MGP_CASTEiJ_T0044308.1 MGP_CASTEiJ_G0022092.1 mouse_genomes_project 16 42710085 42741242 + MGP_CASTEiJ_P0044308 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012777.1 MGP_CASTEiJ_G0010940.1 mouse_genomes_project 16 21268223 21269804 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0042829.1 MGP_CASTEiJ_G0021742.1 mouse_genomes_project 16 1570179 1607382 - MGP_CASTEiJ_P0042829 Glyr1 protein_coding protein_coding MGP_CASTEiJ_T0042830.1 MGP_CASTEiJ_G0021742.1 mouse_genomes_project 16 1570179 1607382 - MGP_CASTEiJ_P0042830 Glyr1 protein_coding protein_coding MGP_CASTEiJ_T0043095.1 MGP_CASTEiJ_G0021815.1 mouse_genomes_project 16 13162033 13175987 + MGP_CASTEiJ_P0043095 Pkp2 protein_coding protein_coding MGP_CASTEiJ_T0043096.1 MGP_CASTEiJ_G0021815.1 mouse_genomes_project 16 13162033 13196314 + MGP_CASTEiJ_P0043096 Pkp2 protein_coding protein_coding MGP_CASTEiJ_T0043097.1 MGP_CASTEiJ_G0021815.1 mouse_genomes_project 16 13162033 13220698 + MGP_CASTEiJ_P0043097 Pkp2 protein_coding protein_coding MGP_CASTEiJ_T0006661.1 MGP_CASTEiJ_G0005507.1 mouse_genomes_project 16 19291425 19292283 - 2610020F03Rik lincRNA lincRNA MGP_CASTEiJ_T0044096.1 MGP_CASTEiJ_G0022047.1 mouse_genomes_project 16 34884607 34919771 + MGP_CASTEiJ_P0044096 Ildr1 protein_coding protein_coding MGP_CASTEiJ_T0044097.1 MGP_CASTEiJ_G0022047.1 mouse_genomes_project 16 34884659 34910316 + Ildr1 protein_coding retained_intron MGP_CASTEiJ_T0044098.1 MGP_CASTEiJ_G0022047.1 mouse_genomes_project 16 34884786 34918582 + MGP_CASTEiJ_P0044098 Ildr1 protein_coding protein_coding MGP_CASTEiJ_T0044099.1 MGP_CASTEiJ_G0022047.1 mouse_genomes_project 16 34908455 34915219 + Ildr1 protein_coding retained_intron MGP_CASTEiJ_T0012766.1 MGP_CASTEiJ_G0010929.1 mouse_genomes_project 16 16324158 16339307 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044685.1 MGP_CASTEiJ_G0022206.1 mouse_genomes_project 16 73556497 74096925 - MGP_CASTEiJ_P0044685 Robo2 protein_coding protein_coding MGP_CASTEiJ_T0044686.1 MGP_CASTEiJ_G0022206.1 mouse_genomes_project 16 73558542 74097228 - MGP_CASTEiJ_P0044686 Robo2 protein_coding protein_coding MGP_CASTEiJ_T0044687.1 MGP_CASTEiJ_G0022206.1 mouse_genomes_project 16 73558851 73564075 - Robo2 protein_coding retained_intron MGP_CASTEiJ_T0044688.1 MGP_CASTEiJ_G0022206.1 mouse_genomes_project 16 73561216 73572204 - Robo2 protein_coding processed_transcript MGP_CASTEiJ_T0044689.1 MGP_CASTEiJ_G0022206.1 mouse_genomes_project 16 73587278 74097721 - MGP_CASTEiJ_P0044689 Robo2 protein_coding protein_coding MGP_CASTEiJ_T0044690.1 MGP_CASTEiJ_G0022206.1 mouse_genomes_project 16 73587533 73602825 - Robo2 protein_coding retained_intron MGP_CASTEiJ_T0044691.1 MGP_CASTEiJ_G0022206.1 mouse_genomes_project 16 73657710 73700946 - Robo2 protein_coding processed_transcript MGP_CASTEiJ_T0044692.1 MGP_CASTEiJ_G0022206.1 mouse_genomes_project 16 73717079 74097373 - Robo2 protein_coding retained_intron MGP_CASTEiJ_T0044693.1 MGP_CASTEiJ_G0022206.1 mouse_genomes_project 16 74036724 74097761 - Robo2 protein_coding retained_intron MGP_CASTEiJ_T0044720.1 MGP_CASTEiJ_G0022216.1 mouse_genomes_project 16 78168081 78188839 - MGP_CASTEiJ_P0044720 protein_coding protein_coding MGP_CASTEiJ_T0012801.1 MGP_CASTEiJ_G0010964.1 mouse_genomes_project 16 44073309 44074664 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0043987.1 MGP_CASTEiJ_G0022013.1 mouse_genomes_project 16 31188857 31252403 + MGP_CASTEiJ_P0043987 Osbpl11 protein_coding protein_coding MGP_CASTEiJ_T0043352.1 MGP_CASTEiJ_G0021866.1 mouse_genomes_project 16 15322749 15327573 + Trmt2a protein_coding retained_intron MGP_CASTEiJ_T0043353.1 MGP_CASTEiJ_G0021866.1 mouse_genomes_project 16 15322953 15328843 + MGP_CASTEiJ_P0043353 Trmt2a protein_coding protein_coding MGP_CASTEiJ_T0043354.1 MGP_CASTEiJ_G0021866.1 mouse_genomes_project 16 15322953 15327574 + MGP_CASTEiJ_P0043354 Trmt2a protein_coding protein_coding MGP_CASTEiJ_T0043355.1 MGP_CASTEiJ_G0021866.1 mouse_genomes_project 16 15323072 15327573 + Trmt2a protein_coding retained_intron MGP_CASTEiJ_T0043356.1 MGP_CASTEiJ_G0021866.1 mouse_genomes_project 16 15323079 15327569 + Trmt2a protein_coding retained_intron MGP_CASTEiJ_T0043357.1 MGP_CASTEiJ_G0021866.1 mouse_genomes_project 16 15323079 15327579 + Trmt2a protein_coding retained_intron MGP_CASTEiJ_T0043358.1 MGP_CASTEiJ_G0021866.1 mouse_genomes_project 16 15323132 15327573 + MGP_CASTEiJ_P0043358 Trmt2a protein_coding protein_coding MGP_CASTEiJ_T0043359.1 MGP_CASTEiJ_G0021866.1 mouse_genomes_project 16 15324091 15327193 + MGP_CASTEiJ_P0043359 Trmt2a protein_coding protein_coding MGP_CASTEiJ_T0043360.1 MGP_CASTEiJ_G0021866.1 mouse_genomes_project 16 15325502 15327572 + MGP_CASTEiJ_P0043360 Trmt2a protein_coding protein_coding MGP_CASTEiJ_T0043361.1 MGP_CASTEiJ_G0021866.1 mouse_genomes_project 16 15326301 15327312 + Trmt2a protein_coding retained_intron MGP_CASTEiJ_T0043698.1 MGP_CASTEiJ_G0021941.1 mouse_genomes_project 16 20735844 20740499 - MGP_CASTEiJ_P0043698 BC106179 protein_coding protein_coding MGP_CASTEiJ_T0042942.1 MGP_CASTEiJ_G0021776.1 mouse_genomes_project 16 7647870 7647941 + MGP_CASTEiJ_P0042942 Gm11172 protein_coding protein_coding MGP_CASTEiJ_T0098352.1 MGP_CASTEiJ_G0035283.1 mouse_genomes_project 16 89233864 89234118 - pseudogene pseudogene MGP_CASTEiJ_T0044034.1 MGP_CASTEiJ_G0022024.1 mouse_genomes_project 16 32868472 33004596 + Mylk protein_coding retained_intron MGP_CASTEiJ_T0044035.1 MGP_CASTEiJ_G0022024.1 mouse_genomes_project 16 32911150 33130074 + MGP_CASTEiJ_P0044035 Mylk protein_coding protein_coding MGP_CASTEiJ_T0044036.1 MGP_CASTEiJ_G0022024.1 mouse_genomes_project 16 32931911 33128274 + MGP_CASTEiJ_P0044036 Mylk protein_coding unknown_likely_coding MGP_CASTEiJ_T0045016.1 MGP_CASTEiJ_G0022309.1 mouse_genomes_project 16 93165830 93409896 - MGP_CASTEiJ_P0045016 Runx1 protein_coding protein_coding MGP_CASTEiJ_T0045017.1 MGP_CASTEiJ_G0022309.1 mouse_genomes_project 16 93170606 93272888 - MGP_CASTEiJ_P0045017 Runx1 protein_coding protein_coding MGP_CASTEiJ_T0045018.1 MGP_CASTEiJ_G0022309.1 mouse_genomes_project 16 93172354 93271685 - MGP_CASTEiJ_P0045018 Runx1 protein_coding protein_coding MGP_CASTEiJ_T0045019.1 MGP_CASTEiJ_G0022309.1 mouse_genomes_project 16 93261478 93271055 - MGP_CASTEiJ_P0045019 Runx1 protein_coding protein_coding MGP_CASTEiJ_T0045020.1 MGP_CASTEiJ_G0022309.1 mouse_genomes_project 16 93261511 93272885 - Runx1 protein_coding retained_intron MGP_CASTEiJ_T0045021.1 MGP_CASTEiJ_G0022309.1 mouse_genomes_project 16 93271151 93409526 - MGP_CASTEiJ_P0045021 Runx1 protein_coding protein_coding MGP_CASTEiJ_T0045022.1 MGP_CASTEiJ_G0022309.1 mouse_genomes_project 16 93399135 93409821 - MGP_CASTEiJ_P0045022 Runx1 protein_coding protein_coding MGP_CASTEiJ_T0000934.1 MGP_CASTEiJ_G0000871.1 mouse_genomes_project 16 77445743 77448903 + TEC TEC MGP_CASTEiJ_T0044235.1 MGP_CASTEiJ_G0022079.1 mouse_genomes_project 16 37118882 37136320 - MGP_CASTEiJ_P0044235 4930435E12Rik protein_coding protein_coding MGP_CASTEiJ_T0044236.1 MGP_CASTEiJ_G0022079.1 mouse_genomes_project 16 37130757 37136302 - 4930435E12Rik protein_coding retained_intron MGP_CASTEiJ_T0100730.1 MGP_CASTEiJ_G0037643.1 mouse_genomes_project 16 53320177 53320309 + Gm25853 snoRNA snoRNA MGP_CASTEiJ_T0044149.1 MGP_CASTEiJ_G0022055.1 mouse_genomes_project 16 35326329 35617203 - MGP_CASTEiJ_P0044149 Stxbp5l protein_coding protein_coding MGP_CASTEiJ_T0044150.1 MGP_CASTEiJ_G0022055.1 mouse_genomes_project 16 35326655 35617203 - MGP_CASTEiJ_P0044150 Stxbp5l protein_coding protein_coding MGP_CASTEiJ_T0044151.1 MGP_CASTEiJ_G0022055.1 mouse_genomes_project 16 35327043 35617238 - MGP_CASTEiJ_P0044151 Stxbp5l protein_coding protein_coding MGP_CASTEiJ_T0044152.1 MGP_CASTEiJ_G0022055.1 mouse_genomes_project 16 35327043 35617242 - MGP_CASTEiJ_P0044152 Stxbp5l protein_coding protein_coding MGP_CASTEiJ_T0044153.1 MGP_CASTEiJ_G0022055.1 mouse_genomes_project 16 35345222 35617203 - MGP_CASTEiJ_P0044153 Stxbp5l protein_coding protein_coding MGP_CASTEiJ_T0044154.1 MGP_CASTEiJ_G0022055.1 mouse_genomes_project 16 35369404 35419428 - Stxbp5l protein_coding processed_transcript MGP_CASTEiJ_T0044155.1 MGP_CASTEiJ_G0022055.1 mouse_genomes_project 16 35429463 35617203 - MGP_CASTEiJ_P0044155 Stxbp5l protein_coding protein_coding MGP_CASTEiJ_T0044156.1 MGP_CASTEiJ_G0022055.1 mouse_genomes_project 16 35547826 35617203 - Stxbp5l protein_coding retained_intron MGP_CASTEiJ_T0044157.1 MGP_CASTEiJ_G0022055.1 mouse_genomes_project 16 35606094 35617238 - Stxbp5l protein_coding processed_transcript MGP_CASTEiJ_T0044158.1 MGP_CASTEiJ_G0022055.1 mouse_genomes_project 16 35615116 35617203 - Stxbp5l protein_coding retained_intron MGP_CASTEiJ_T0012765.1 MGP_CASTEiJ_G0010928.1 mouse_genomes_project 16 16324155 16339307 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012749.1 MGP_CASTEiJ_G0010912.1 mouse_genomes_project 16 10990373 10991328 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0043939.1 MGP_CASTEiJ_G0022006.1 mouse_genomes_project 16 30775704 30781234 - MGP_CASTEiJ_P0043939 Gm933 protein_coding protein_coding MGP_CASTEiJ_T0044250.1 MGP_CASTEiJ_G0022082.1 mouse_genomes_project 16 40697872 40797768 - MGP_CASTEiJ_P0044250 Gap43 protein_coding protein_coding MGP_CASTEiJ_T0044251.1 MGP_CASTEiJ_G0022082.1 mouse_genomes_project 16 40697888 40729288 - Gap43 protein_coding processed_transcript MGP_CASTEiJ_T0044237.1 MGP_CASTEiJ_G0022080.1 mouse_genomes_project 16 37202020 37337474 + MGP_CASTEiJ_P0044237 Igsf11 protein_coding protein_coding MGP_CASTEiJ_T0044238.1 MGP_CASTEiJ_G0022080.1 mouse_genomes_project 16 37202845 37339305 + MGP_CASTEiJ_P0044238 Igsf11 protein_coding protein_coding MGP_CASTEiJ_T0043301.1 MGP_CASTEiJ_G0021848.1 mouse_genomes_project 16 14688082 14774233 - MGP_CASTEiJ_P0043301 Med15 protein_coding protein_coding MGP_CASTEiJ_T0043302.1 MGP_CASTEiJ_G0021848.1 mouse_genomes_project 16 14688082 14774233 - MGP_CASTEiJ_P0043302 Med15 protein_coding protein_coding MGP_CASTEiJ_T0042788.1 MGP_CASTEiJ_G0021732.1 mouse_genomes_project 16 1275484 1301304 - MGP_CASTEiJ_P0042788 Cdip1 protein_coding protein_coding MGP_CASTEiJ_T0042791.1 MGP_CASTEiJ_G0021732.1 mouse_genomes_project 16 1296671 1322929 - MGP_CASTEiJ_P0042791 Cdip1 protein_coding protein_coding MGP_CASTEiJ_T0042792.1 MGP_CASTEiJ_G0021732.1 mouse_genomes_project 16 1298051 1302642 - Cdip1 protein_coding retained_intron MGP_CASTEiJ_T0042793.1 MGP_CASTEiJ_G0021732.1 mouse_genomes_project 16 1298051 1323231 - MGP_CASTEiJ_P0042793 Cdip1 protein_coding protein_coding MGP_CASTEiJ_T0042794.1 MGP_CASTEiJ_G0021732.1 mouse_genomes_project 16 1298549 1322869 - MGP_CASTEiJ_P0042794 Cdip1 protein_coding protein_coding MGP_CASTEiJ_T0042795.1 MGP_CASTEiJ_G0021732.1 mouse_genomes_project 16 1300515 1323205 - Cdip1 protein_coding retained_intron MGP_CASTEiJ_T0100721.1 MGP_CASTEiJ_G0037634.1 mouse_genomes_project 16 36432340 36432450 + Gm25053 snoRNA snoRNA MGP_CASTEiJ_T0003536.1 MGP_CASTEiJ_G0003209.1 mouse_genomes_project 16 10666310 10675746 + Pla2g10os antisense antisense MGP_CASTEiJ_T0042950.1 MGP_CASTEiJ_G0021780.1 mouse_genomes_project 16 7934061 7997095 - MGP_CASTEiJ_P0042950 Txndc11 protein_coding protein_coding MGP_CASTEiJ_T0042951.1 MGP_CASTEiJ_G0021780.1 mouse_genomes_project 16 7934575 7946397 - Txndc11 protein_coding retained_intron MGP_CASTEiJ_T0042952.1 MGP_CASTEiJ_G0021780.1 mouse_genomes_project 16 7946363 7948957 - Txndc11 protein_coding processed_transcript MGP_CASTEiJ_T0042953.1 MGP_CASTEiJ_G0021780.1 mouse_genomes_project 16 7947122 7997056 - MGP_CASTEiJ_P0042953 Txndc11 protein_coding protein_coding MGP_CASTEiJ_T0042954.1 MGP_CASTEiJ_G0021780.1 mouse_genomes_project 16 7948839 7997018 - MGP_CASTEiJ_P0042954 Txndc11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042955.1 MGP_CASTEiJ_G0021780.1 mouse_genomes_project 16 7949876 7987372 - Txndc11 protein_coding processed_transcript MGP_CASTEiJ_T0042956.1 MGP_CASTEiJ_G0021780.1 mouse_genomes_project 16 7966327 7996998 - MGP_CASTEiJ_P0042956 Txndc11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042957.1 MGP_CASTEiJ_G0021780.1 mouse_genomes_project 16 7967673 7997095 - MGP_CASTEiJ_P0042957 Txndc11 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042958.1 MGP_CASTEiJ_G0021780.1 mouse_genomes_project 16 7978847 7997058 - MGP_CASTEiJ_P0042958 Txndc11 protein_coding protein_coding MGP_CASTEiJ_T0044609.1 MGP_CASTEiJ_G0022176.1 mouse_genomes_project 16 58089622 58090133 - MGP_CASTEiJ_P0044609 protein_coding protein_coding MGP_CASTEiJ_T0012772.1 MGP_CASTEiJ_G0010935.1 mouse_genomes_project 16 19634961 19635487 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016779.1 MGP_CASTEiJ_G0014640.1 mouse_genomes_project 16 91493129 91505240 + 4931406G06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0043422.1 MGP_CASTEiJ_G0021875.1 mouse_genomes_project 16 15735895 15737975 - MGP_CASTEiJ_P0043422 Gp1bb protein_coding protein_coding MGP_CASTEiJ_T0043423.1 MGP_CASTEiJ_G0021875.1 mouse_genomes_project 16 15736298 15736943 - MGP_CASTEiJ_P0043423 Gp1bb protein_coding protein_coding MGP_CASTEiJ_T0045041.1 MGP_CASTEiJ_G0022315.1 mouse_genomes_project 16 94647157 94669895 + MGP_CASTEiJ_P0045041 Chaf1b protein_coding protein_coding MGP_CASTEiJ_T0045042.1 MGP_CASTEiJ_G0022315.1 mouse_genomes_project 16 94647180 94669857 + MGP_CASTEiJ_P0045042 Chaf1b protein_coding protein_coding MGP_CASTEiJ_T0045043.1 MGP_CASTEiJ_G0022315.1 mouse_genomes_project 16 94647187 94657566 + Chaf1b protein_coding retained_intron MGP_CASTEiJ_T0045044.1 MGP_CASTEiJ_G0022315.1 mouse_genomes_project 16 94647272 94648725 + MGP_CASTEiJ_P0045044 Chaf1b protein_coding protein_coding MGP_CASTEiJ_T0045045.1 MGP_CASTEiJ_G0022315.1 mouse_genomes_project 16 94647458 94650422 + MGP_CASTEiJ_P0045045 Chaf1b protein_coding protein_coding MGP_CASTEiJ_T0045046.1 MGP_CASTEiJ_G0022315.1 mouse_genomes_project 16 94649979 94656066 + Chaf1b protein_coding processed_transcript MGP_CASTEiJ_T0045047.1 MGP_CASTEiJ_G0022315.1 mouse_genomes_project 16 94656017 94663032 + Chaf1b protein_coding retained_intron MGP_CASTEiJ_T0045048.1 MGP_CASTEiJ_G0022315.1 mouse_genomes_project 16 94668453 94669890 + Chaf1b protein_coding retained_intron MGP_CASTEiJ_T0044077.1 MGP_CASTEiJ_G0022037.1 mouse_genomes_project 16 34240823 34269049 - MGP_CASTEiJ_P0044077 Fam162a protein_coding protein_coding MGP_CASTEiJ_T0012754.1 MGP_CASTEiJ_G0010917.1 mouse_genomes_project 16 12387535 12388588 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0043132.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13860228 13875355 + MGP_CASTEiJ_P0043132 Top3b protein_coding protein_coding MGP_CASTEiJ_T0043133.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13860249 13882469 + MGP_CASTEiJ_P0043133 Top3b protein_coding protein_coding MGP_CASTEiJ_T0043134.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13860259 13868852 + MGP_CASTEiJ_P0043134 Top3b protein_coding protein_coding MGP_CASTEiJ_T0043135.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13860266 13873038 + MGP_CASTEiJ_P0043135 Top3b protein_coding protein_coding MGP_CASTEiJ_T0043136.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13860273 13882474 + MGP_CASTEiJ_P0043136 Top3b protein_coding protein_coding MGP_CASTEiJ_T0043137.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13860278 13874971 + Top3b protein_coding retained_intron MGP_CASTEiJ_T0043138.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13860279 13870175 + MGP_CASTEiJ_P0043138 Top3b protein_coding protein_coding MGP_CASTEiJ_T0043139.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13860292 13868867 + Top3b protein_coding retained_intron MGP_CASTEiJ_T0043140.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13860299 13868579 + MGP_CASTEiJ_P0043140 Top3b protein_coding protein_coding MGP_CASTEiJ_T0043141.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13860309 13882474 + Top3b protein_coding retained_intron MGP_CASTEiJ_T0043142.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13860332 13868514 + MGP_CASTEiJ_P0043142 Top3b protein_coding protein_coding MGP_CASTEiJ_T0043143.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13860458 13868995 + Top3b protein_coding retained_intron MGP_CASTEiJ_T0043144.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13872953 13882457 + MGP_CASTEiJ_P0043144 Top3b protein_coding protein_coding MGP_CASTEiJ_T0043145.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13873721 13882474 + Top3b protein_coding retained_intron MGP_CASTEiJ_T0043146.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13875030 13876202 + Top3b protein_coding retained_intron MGP_CASTEiJ_T0043147.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13876139 13877215 + Top3b protein_coding retained_intron MGP_CASTEiJ_T0043148.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13876405 13877392 + Top3b protein_coding retained_intron MGP_CASTEiJ_T0043149.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13877343 13882459 + Top3b protein_coding retained_intron MGP_CASTEiJ_T0043150.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13879703 13881984 + MGP_CASTEiJ_P0043150 Top3b protein_coding protein_coding MGP_CASTEiJ_T0043151.1 MGP_CASTEiJ_G0021823.1 mouse_genomes_project 16 13880985 13881903 + Top3b protein_coding retained_intron MGP_CASTEiJ_T0042980.1 MGP_CASTEiJ_G0021783.1 mouse_genomes_project 16 8086331 8120269 - MGP_CASTEiJ_P0042980 Gspt1 protein_coding protein_coding MGP_CASTEiJ_T0042981.1 MGP_CASTEiJ_G0021783.1 mouse_genomes_project 16 8087091 8120208 - MGP_CASTEiJ_P0042981 Gspt1 protein_coding protein_coding MGP_CASTEiJ_T0042982.1 MGP_CASTEiJ_G0021783.1 mouse_genomes_project 16 8087440 8091553 - MGP_CASTEiJ_P0042982 Gspt1 protein_coding protein_coding MGP_CASTEiJ_T0042983.1 MGP_CASTEiJ_G0021783.1 mouse_genomes_project 16 8089630 8095557 - Gspt1 protein_coding retained_intron MGP_CASTEiJ_T0042984.1 MGP_CASTEiJ_G0021783.1 mouse_genomes_project 16 8097948 8104669 - Gspt1 protein_coding retained_intron MGP_CASTEiJ_T0099494.1 MGP_CASTEiJ_G0036407.1 mouse_genomes_project 16 34493462 34493569 + Gm22349 snRNA snRNA MGP_CASTEiJ_T0099476.1 MGP_CASTEiJ_G0036389.1 mouse_genomes_project 16 7031405 7031508 + Gm24392 snRNA snRNA MGP_CASTEiJ_T0043628.1 MGP_CASTEiJ_G0021923.1 mouse_genomes_project 16 19276119 19315344 + MGP_CASTEiJ_P0043628 Map3k13 protein_coding protein_coding MGP_CASTEiJ_T0042733.1 MGP_CASTEiJ_G0021720.1 mouse_genomes_project 16 507768 550106 - MGP_CASTEiJ_P0042733 Trap1 protein_coding protein_coding MGP_CASTEiJ_T0042734.1 MGP_CASTEiJ_G0021720.1 mouse_genomes_project 16 507937 512518 - Trap1 protein_coding processed_transcript MGP_CASTEiJ_T0042735.1 MGP_CASTEiJ_G0021720.1 mouse_genomes_project 16 528471 550054 - MGP_CASTEiJ_P0042735 Trap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042736.1 MGP_CASTEiJ_G0021720.1 mouse_genomes_project 16 537068 550106 - Trap1 protein_coding retained_intron MGP_CASTEiJ_T0012752.1 MGP_CASTEiJ_G0010915.1 mouse_genomes_project 16 11049693 11050297 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016756.1 MGP_CASTEiJ_G0014634.1 mouse_genomes_project 16 57392551 57395965 - 4930461C15Rik processed_transcript processed_transcript MGP_CASTEiJ_T0011473.1 MGP_CASTEiJ_G0009656.1 mouse_genomes_project 16 98540561 98572580 + MGP_CASTEiJ_P0011473 Mx2 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0011474.1 MGP_CASTEiJ_G0009656.1 mouse_genomes_project 16 98541340 98573140 + MGP_CASTEiJ_P0011474 Mx2 polymorphic_pseudogene protein_coding MGP_CASTEiJ_T0011475.1 MGP_CASTEiJ_G0009656.1 mouse_genomes_project 16 98561825 98563408 + Mx2 polymorphic_pseudogene processed_transcript MGP_CASTEiJ_T0011476.1 MGP_CASTEiJ_G0009656.1 mouse_genomes_project 16 98570655 98572759 + Mx2 polymorphic_pseudogene retained_intron MGP_CASTEiJ_T0045196.1 MGP_CASTEiJ_G0009656.1 mouse_genomes_project 16 98541294 98573150 + MGP_CASTEiJ_P0045196 Mx2 polymorphic_pseudogene unknown_likely_coding MGP_CASTEiJ_T0043655.1 MGP_CASTEiJ_G0021932.1 mouse_genomes_project 16 20269521 20316327 - MGP_CASTEiJ_P0043655 Tbccd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043849.1 MGP_CASTEiJ_G0021982.1 mouse_genomes_project 16 29783158 29805274 + MGP_CASTEiJ_P0043849 Mfi2 protein_coding protein_coding MGP_CASTEiJ_T0044587.1 MGP_CASTEiJ_G0022165.1 mouse_genomes_project 16 57765225 57767532 - MGP_CASTEiJ_P0044587 Olfr172 protein_coding protein_coding MGP_CASTEiJ_T0044375.1 MGP_CASTEiJ_G0022105.1 mouse_genomes_project 16 43748644 43777419 + MGP_CASTEiJ_P0044375 Btla protein_coding protein_coding MGP_CASTEiJ_T0044376.1 MGP_CASTEiJ_G0022105.1 mouse_genomes_project 16 43748666 43777422 + MGP_CASTEiJ_P0044376 Btla protein_coding protein_coding MGP_CASTEiJ_T0003578.1 MGP_CASTEiJ_G0003242.1 mouse_genomes_project 16 93182055 93189278 + Gm26626 antisense antisense MGP_CASTEiJ_T0044464.1 MGP_CASTEiJ_G0022131.1 mouse_genomes_project 16 48912807 49163381 - MGP_CASTEiJ_P0044464 Bbx protein_coding protein_coding MGP_CASTEiJ_T0044465.1 MGP_CASTEiJ_G0022131.1 mouse_genomes_project 16 48916743 49163331 - MGP_CASTEiJ_P0044465 Bbx protein_coding protein_coding MGP_CASTEiJ_T0044466.1 MGP_CASTEiJ_G0022131.1 mouse_genomes_project 16 48917578 49163380 - MGP_CASTEiJ_P0044466 Bbx protein_coding protein_coding MGP_CASTEiJ_T0044467.1 MGP_CASTEiJ_G0022131.1 mouse_genomes_project 16 48918324 49002797 - MGP_CASTEiJ_P0044467 Bbx protein_coding unknown_likely_coding MGP_CASTEiJ_T0044468.1 MGP_CASTEiJ_G0022131.1 mouse_genomes_project 16 48918461 49056189 - MGP_CASTEiJ_P0044468 Bbx protein_coding protein_coding MGP_CASTEiJ_T0044469.1 MGP_CASTEiJ_G0022131.1 mouse_genomes_project 16 48931757 49163365 - MGP_CASTEiJ_P0044469 Bbx protein_coding protein_coding MGP_CASTEiJ_T0044470.1 MGP_CASTEiJ_G0022131.1 mouse_genomes_project 16 48939874 49163380 - MGP_CASTEiJ_P0044470 Bbx protein_coding protein_coding MGP_CASTEiJ_T0044471.1 MGP_CASTEiJ_G0022131.1 mouse_genomes_project 16 48946163 49159778 - Bbx protein_coding processed_transcript MGP_CASTEiJ_T0044472.1 MGP_CASTEiJ_G0022131.1 mouse_genomes_project 16 49155811 49163300 - Bbx protein_coding retained_intron MGP_CASTEiJ_T0044473.1 MGP_CASTEiJ_G0022131.1 mouse_genomes_project 16 49157233 49163338 - Bbx protein_coding processed_transcript MGP_CASTEiJ_T0009882.1 MGP_CASTEiJ_G0008070.1 mouse_genomes_project 16 64631015 64631126 + Gm23659 miRNA miRNA MGP_CASTEiJ_T0043104.1 MGP_CASTEiJ_G0021817.1 mouse_genomes_project 16 13273975 13323573 - MGP_CASTEiJ_P0043104 Dnm1l protein_coding protein_coding MGP_CASTEiJ_T0043105.1 MGP_CASTEiJ_G0021817.1 mouse_genomes_project 16 13273975 13323573 - MGP_CASTEiJ_P0043105 Dnm1l protein_coding protein_coding MGP_CASTEiJ_T0043106.1 MGP_CASTEiJ_G0021817.1 mouse_genomes_project 16 13273975 13323573 - MGP_CASTEiJ_P0043106 Dnm1l protein_coding protein_coding MGP_CASTEiJ_T0043107.1 MGP_CASTEiJ_G0021817.1 mouse_genomes_project 16 13275722 13323408 - MGP_CASTEiJ_P0043107 Dnm1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0043108.1 MGP_CASTEiJ_G0021817.1 mouse_genomes_project 16 13280411 13323525 - MGP_CASTEiJ_P0043108 Dnm1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0045171.1 MGP_CASTEiJ_G0022335.1 mouse_genomes_project 16 97173891 97258278 + MGP_CASTEiJ_P0045171 B3galt5 protein_coding protein_coding MGP_CASTEiJ_T0045172.1 MGP_CASTEiJ_G0022335.1 mouse_genomes_project 16 97210003 97252194 + B3galt5 protein_coding processed_transcript MGP_CASTEiJ_T0045173.1 MGP_CASTEiJ_G0022335.1 mouse_genomes_project 16 97210140 97252195 + B3galt5 protein_coding processed_transcript MGP_CASTEiJ_T0045174.1 MGP_CASTEiJ_G0022335.1 mouse_genomes_project 16 97217257 97258276 + MGP_CASTEiJ_P0045174 B3galt5 protein_coding protein_coding MGP_CASTEiJ_T0043048.1 MGP_CASTEiJ_G0021798.1 mouse_genomes_project 16 10872834 10929234 + MGP_CASTEiJ_P0043048 Mpv17l protein_coding protein_coding MGP_CASTEiJ_T0043049.1 MGP_CASTEiJ_G0021798.1 mouse_genomes_project 16 10919632 10928565 + MGP_CASTEiJ_P0043049 Mpv17l protein_coding protein_coding MGP_CASTEiJ_T0043050.1 MGP_CASTEiJ_G0021798.1 mouse_genomes_project 16 10919697 10928424 + MGP_CASTEiJ_P0043050 Mpv17l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043051.1 MGP_CASTEiJ_G0021798.1 mouse_genomes_project 16 10919704 10926720 + MGP_CASTEiJ_P0043051 Mpv17l protein_coding protein_coding MGP_CASTEiJ_T0043052.1 MGP_CASTEiJ_G0021798.1 mouse_genomes_project 16 10919716 10931698 + MGP_CASTEiJ_P0043052 Mpv17l protein_coding protein_coding MGP_CASTEiJ_T0043053.1 MGP_CASTEiJ_G0021798.1 mouse_genomes_project 16 10920096 10926686 + MGP_CASTEiJ_P0043053 Mpv17l protein_coding protein_coding MGP_CASTEiJ_T0042993.1 MGP_CASTEiJ_G0021786.1 mouse_genomes_project 16 8696409 8801149 - MGP_CASTEiJ_P0042993 Cpped1 protein_coding protein_coding MGP_CASTEiJ_T0042994.1 MGP_CASTEiJ_G0021786.1 mouse_genomes_project 16 8696415 8801148 - MGP_CASTEiJ_P0042994 Cpped1 protein_coding protein_coding MGP_CASTEiJ_T0042995.1 MGP_CASTEiJ_G0021786.1 mouse_genomes_project 16 8720501 8801122 - Cpped1 protein_coding retained_intron MGP_CASTEiJ_T0042996.1 MGP_CASTEiJ_G0021786.1 mouse_genomes_project 16 8721501 8801124 - MGP_CASTEiJ_P0042996 Cpped1 protein_coding protein_coding MGP_CASTEiJ_T0042997.1 MGP_CASTEiJ_G0021786.1 mouse_genomes_project 16 8775373 8801171 - MGP_CASTEiJ_P0042997 Cpped1 protein_coding protein_coding MGP_CASTEiJ_T0098530.1 MGP_CASTEiJ_G0035461.1 mouse_genomes_project 16 36108324 36108440 + n-R5s34 rRNA rRNA MGP_CASTEiJ_T0099475.1 MGP_CASTEiJ_G0036388.1 mouse_genomes_project 16 5464458 5464566 - Gm25805 snRNA snRNA MGP_CASTEiJ_T0044801.1 MGP_CASTEiJ_G0022243.1 mouse_genomes_project 16 88964639 88965433 - MGP_CASTEiJ_P0044801 2310061N02Rik protein_coding protein_coding MGP_CASTEiJ_T0100725.1 MGP_CASTEiJ_G0037638.1 mouse_genomes_project 16 44791083 44791215 + Gm26297 snoRNA snoRNA MGP_CASTEiJ_T0003559.1 MGP_CASTEiJ_G0003227.1 mouse_genomes_project 16 35083427 35100093 - 4930565N06Rik antisense antisense MGP_CASTEiJ_T0101547.1 MGP_CASTEiJ_G0038430.1 mouse_genomes_project 16 59040251 59040416 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0043350.1 MGP_CASTEiJ_G0021864.1 mouse_genomes_project 16 15293202 15307877 - MGP_CASTEiJ_P0043350 Zdhhc8 protein_coding protein_coding MGP_CASTEiJ_T0100723.1 MGP_CASTEiJ_G0037636.1 mouse_genomes_project 16 42340118 42340245 - Gm26074 snoRNA snoRNA MGP_CASTEiJ_T0009854.1 MGP_CASTEiJ_G0008042.1 mouse_genomes_project 16 15443851 15443922 - Gm26219 miRNA miRNA MGP_CASTEiJ_T0016751.1 MGP_CASTEiJ_G0014632.1 mouse_genomes_project 16 41213851 41354475 - 4932412D23Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016752.1 MGP_CASTEiJ_G0014632.1 mouse_genomes_project 16 41293054 41354650 - 4932412D23Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016753.1 MGP_CASTEiJ_G0014632.1 mouse_genomes_project 16 41293415 41354628 - 4932412D23Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016754.1 MGP_CASTEiJ_G0014632.1 mouse_genomes_project 16 41293567 41354634 - 4932412D23Rik processed_transcript processed_transcript MGP_CASTEiJ_T0043098.1 MGP_CASTEiJ_G0021816.1 mouse_genomes_project 16 13263828 13269435 + MGP_CASTEiJ_P0043098 Yars2 protein_coding protein_coding MGP_CASTEiJ_T0043099.1 MGP_CASTEiJ_G0021816.1 mouse_genomes_project 16 13263837 13268069 + Yars2 protein_coding retained_intron MGP_CASTEiJ_T0043100.1 MGP_CASTEiJ_G0021816.1 mouse_genomes_project 16 13263841 13271877 + MGP_CASTEiJ_P0043100 Yars2 protein_coding protein_coding MGP_CASTEiJ_T0043101.1 MGP_CASTEiJ_G0021816.1 mouse_genomes_project 16 13263844 13271869 + MGP_CASTEiJ_P0043101 Yars2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043102.1 MGP_CASTEiJ_G0021816.1 mouse_genomes_project 16 13264416 13267787 + Yars2 protein_coding processed_transcript MGP_CASTEiJ_T0043103.1 MGP_CASTEiJ_G0021816.1 mouse_genomes_project 16 13265473 13267926 + MGP_CASTEiJ_P0043103 Yars2 protein_coding protein_coding MGP_CASTEiJ_T0042937.1 MGP_CASTEiJ_G0021772.1 mouse_genomes_project 16 7622202 7622922 - MGP_CASTEiJ_P0042937 Tnp2 protein_coding protein_coding MGP_CASTEiJ_T0043091.1 MGP_CASTEiJ_G0021813.1 mouse_genomes_project 16 12801976 12815584 - MGP_CASTEiJ_P0043091 Mzt2 protein_coding protein_coding MGP_CASTEiJ_T0043092.1 MGP_CASTEiJ_G0021813.1 mouse_genomes_project 16 12801978 12814905 - Mzt2 protein_coding retained_intron MGP_CASTEiJ_T0043093.1 MGP_CASTEiJ_G0021813.1 mouse_genomes_project 16 12801985 12815606 - MGP_CASTEiJ_P0043093 Mzt2 protein_coding protein_coding MGP_CASTEiJ_T0012742.1 MGP_CASTEiJ_G0010905.1 mouse_genomes_project 16 1047288 1047676 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044810.1 MGP_CASTEiJ_G0022250.1 mouse_genomes_project 16 89128415 89128971 - MGP_CASTEiJ_P0044810 Krtap19-1 protein_coding protein_coding MGP_CASTEiJ_T0044532.1 MGP_CASTEiJ_G0022147.1 mouse_genomes_project 16 55660966 55722421 - MGP_CASTEiJ_P0044532 Tfg protein_coding unknown_likely_coding MGP_CASTEiJ_T0044533.1 MGP_CASTEiJ_G0022147.1 mouse_genomes_project 16 55695428 55722574 - MGP_CASTEiJ_P0044533 Tfg protein_coding protein_coding MGP_CASTEiJ_T0044534.1 MGP_CASTEiJ_G0022147.1 mouse_genomes_project 16 55695973 55710751 - MGP_CASTEiJ_P0044534 Tfg protein_coding protein_coding MGP_CASTEiJ_T0044535.1 MGP_CASTEiJ_G0022147.1 mouse_genomes_project 16 55696064 55709521 - MGP_CASTEiJ_P0044535 Tfg protein_coding protein_coding MGP_CASTEiJ_T0044536.1 MGP_CASTEiJ_G0022147.1 mouse_genomes_project 16 55708559 55722409 - MGP_CASTEiJ_P0044536 Tfg protein_coding protein_coding MGP_CASTEiJ_T0044537.1 MGP_CASTEiJ_G0022147.1 mouse_genomes_project 16 55709506 55718027 - MGP_CASTEiJ_P0044537 Tfg protein_coding protein_coding MGP_CASTEiJ_T0044538.1 MGP_CASTEiJ_G0022147.1 mouse_genomes_project 16 55709588 55722458 - MGP_CASTEiJ_P0044538 Tfg protein_coding protein_coding MGP_CASTEiJ_T0044539.1 MGP_CASTEiJ_G0022147.1 mouse_genomes_project 16 55710667 55722280 - MGP_CASTEiJ_P0044539 Tfg protein_coding protein_coding MGP_CASTEiJ_T0098526.1 MGP_CASTEiJ_G0035457.1 mouse_genomes_project 16 10948520 10948630 - Gm26213 rRNA rRNA MGP_CASTEiJ_T0012746.1 MGP_CASTEiJ_G0010909.1 mouse_genomes_project 16 8056223 8057972 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016759.1 MGP_CASTEiJ_G0014637.1 mouse_genomes_project 16 76978513 77391692 + processed_transcript lincRNA MGP_CASTEiJ_T0016760.1 MGP_CASTEiJ_G0014637.1 mouse_genomes_project 16 76978513 77137862 + processed_transcript lincRNA MGP_CASTEiJ_T0016761.1 MGP_CASTEiJ_G0014637.1 mouse_genomes_project 16 76978515 77390221 + processed_transcript lincRNA MGP_CASTEiJ_T0016762.1 MGP_CASTEiJ_G0014637.1 mouse_genomes_project 16 77103225 77482488 + processed_transcript lincRNA MGP_CASTEiJ_T0016763.1 MGP_CASTEiJ_G0014637.1 mouse_genomes_project 16 77103233 77135212 + processed_transcript lincRNA MGP_CASTEiJ_T0016764.1 MGP_CASTEiJ_G0014637.1 mouse_genomes_project 16 77103250 77388189 + processed_transcript lincRNA MGP_CASTEiJ_T0016765.1 MGP_CASTEiJ_G0014637.1 mouse_genomes_project 16 77103304 77391713 + processed_transcript lincRNA MGP_CASTEiJ_T0016766.1 MGP_CASTEiJ_G0014637.1 mouse_genomes_project 16 77103373 77348639 + processed_transcript lincRNA MGP_CASTEiJ_T0016767.1 MGP_CASTEiJ_G0014637.1 mouse_genomes_project 16 77103549 77493516 + processed_transcript lincRNA MGP_CASTEiJ_T0016768.1 MGP_CASTEiJ_G0014637.1 mouse_genomes_project 16 77238960 77241429 + processed_transcript TEC MGP_CASTEiJ_T0016769.1 MGP_CASTEiJ_G0014637.1 mouse_genomes_project 16 77283520 77391730 + processed_transcript lincRNA MGP_CASTEiJ_T0016770.1 MGP_CASTEiJ_G0014637.1 mouse_genomes_project 16 77283669 77493520 + processed_transcript lincRNA MGP_CASTEiJ_T0016771.1 MGP_CASTEiJ_G0014637.1 mouse_genomes_project 16 77387094 77389341 + processed_transcript TEC MGP_CASTEiJ_T0016772.1 MGP_CASTEiJ_G0014637.1 mouse_genomes_project 16 77387632 77388233 + processed_transcript lincRNA MGP_CASTEiJ_T0016773.1 MGP_CASTEiJ_G0014637.1 mouse_genomes_project 16 77471319 77493514 + processed_transcript lincRNA MGP_CASTEiJ_T0016774.1 MGP_CASTEiJ_G0014637.1 mouse_genomes_project 16 77482199 77493514 + processed_transcript lincRNA MGP_CASTEiJ_T0043324.1 MGP_CASTEiJ_G0021856.1 mouse_genomes_project 16 14959172 14972338 - MGP_CASTEiJ_P0043324 Dgcr14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043325.1 MGP_CASTEiJ_G0021856.1 mouse_genomes_project 16 14959180 14972381 - MGP_CASTEiJ_P0043325 Dgcr14 protein_coding protein_coding MGP_CASTEiJ_T0044088.1 MGP_CASTEiJ_G0022045.1 mouse_genomes_project 16 34669497 34743774 - MGP_CASTEiJ_P0044088 Casr protein_coding protein_coding MGP_CASTEiJ_T0044089.1 MGP_CASTEiJ_G0022045.1 mouse_genomes_project 16 34669497 34743774 - MGP_CASTEiJ_P0044089 Casr protein_coding protein_coding MGP_CASTEiJ_T0044090.1 MGP_CASTEiJ_G0022045.1 mouse_genomes_project 16 34670268 34743246 - MGP_CASTEiJ_P0044090 Casr protein_coding protein_coding MGP_CASTEiJ_T0044091.1 MGP_CASTEiJ_G0022045.1 mouse_genomes_project 16 34694727 34743781 - Casr protein_coding processed_transcript MGP_CASTEiJ_T0043086.1 MGP_CASTEiJ_G0021809.1 mouse_genomes_project 16 11880481 11898597 + MGP_CASTEiJ_P0043086 Efcab1 protein_coding protein_coding MGP_CASTEiJ_T0044736.1 MGP_CASTEiJ_G0022223.1 mouse_genomes_project 16 84938584 84944924 - MGP_CASTEiJ_P0044736 Atp5j protein_coding protein_coding MGP_CASTEiJ_T0044737.1 MGP_CASTEiJ_G0022223.1 mouse_genomes_project 16 84938589 84939524 - Atp5j protein_coding retained_intron MGP_CASTEiJ_T0044738.1 MGP_CASTEiJ_G0022223.1 mouse_genomes_project 16 84938589 84946182 - MGP_CASTEiJ_P0044738 Atp5j protein_coding protein_coding MGP_CASTEiJ_T0044739.1 MGP_CASTEiJ_G0022223.1 mouse_genomes_project 16 84938589 84946304 - MGP_CASTEiJ_P0044739 Atp5j protein_coding protein_coding MGP_CASTEiJ_T0044740.1 MGP_CASTEiJ_G0022223.1 mouse_genomes_project 16 84938592 84942285 - Atp5j protein_coding retained_intron MGP_CASTEiJ_T0044741.1 MGP_CASTEiJ_G0022223.1 mouse_genomes_project 16 84939148 84946281 - MGP_CASTEiJ_P0044741 Atp5j protein_coding protein_coding MGP_CASTEiJ_T0044742.1 MGP_CASTEiJ_G0022223.1 mouse_genomes_project 16 84940226 84944559 - Atp5j protein_coding processed_transcript MGP_CASTEiJ_T0044743.1 MGP_CASTEiJ_G0022223.1 mouse_genomes_project 16 84941747 84945977 - Atp5j protein_coding retained_intron MGP_CASTEiJ_T0044744.1 MGP_CASTEiJ_G0022223.1 mouse_genomes_project 16 84942006 84945839 - Atp5j protein_coding processed_transcript MGP_CASTEiJ_T0044745.1 MGP_CASTEiJ_G0022223.1 mouse_genomes_project 16 84942046 84945689 - Atp5j protein_coding processed_transcript MGP_CASTEiJ_T0044746.1 MGP_CASTEiJ_G0022223.1 mouse_genomes_project 16 84944205 84945516 - Atp5j protein_coding retained_intron MGP_CASTEiJ_T0044747.1 MGP_CASTEiJ_G0022223.1 mouse_genomes_project 16 84944960 84946208 - Atp5j protein_coding retained_intron MGP_CASTEiJ_T0042756.1 MGP_CASTEiJ_G0021726.1 mouse_genomes_project 16 1135907 1136432 - protein_coding retained_intron MGP_CASTEiJ_T0042757.1 MGP_CASTEiJ_G0021726.1 mouse_genomes_project 16 1135907 1144367 - MGP_CASTEiJ_P0042757 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042758.1 MGP_CASTEiJ_G0021726.1 mouse_genomes_project 16 1135907 1144419 - MGP_CASTEiJ_P0042758 protein_coding protein_coding MGP_CASTEiJ_T0042759.1 MGP_CASTEiJ_G0021726.1 mouse_genomes_project 16 1136045 1137597 - protein_coding retained_intron MGP_CASTEiJ_T0011084.1 MGP_CASTEiJ_G0009272.1 mouse_genomes_project 16 68349212 68349498 + Gm23591 misc_RNA misc_RNA MGP_CASTEiJ_T0045002.1 MGP_CASTEiJ_G0022302.1 mouse_genomes_project 16 92587775 92616846 + MGP_CASTEiJ_P0045002 Slc5a3 protein_coding protein_coding MGP_CASTEiJ_T0045003.1 MGP_CASTEiJ_G0022302.1 mouse_genomes_project 16 92607444 92613193 + MGP_CASTEiJ_P0045003 Slc5a3 protein_coding protein_coding MGP_CASTEiJ_T0009880.1 MGP_CASTEiJ_G0008068.1 mouse_genomes_project 16 59799616 59799729 - Gm27784 miRNA miRNA MGP_CASTEiJ_T0043863.1 MGP_CASTEiJ_G0021987.1 mouse_genomes_project 16 29941761 30005912 - MGP_CASTEiJ_P0043863 Pak2 protein_coding protein_coding MGP_CASTEiJ_T0043864.1 MGP_CASTEiJ_G0021987.1 mouse_genomes_project 16 29959620 29970479 - Pak2 protein_coding retained_intron MGP_CASTEiJ_T0044643.1 MGP_CASTEiJ_G0022191.1 mouse_genomes_project 16 61935396 61992916 - MGP_CASTEiJ_P0044643 Arl13b protein_coding protein_coding MGP_CASTEiJ_T0044644.1 MGP_CASTEiJ_G0022191.1 mouse_genomes_project 16 61938352 61945841 - Arl13b protein_coding processed_transcript MGP_CASTEiJ_T0044646.1 MGP_CASTEiJ_G0022191.1 mouse_genomes_project 16 61969335 61992916 - Arl13b protein_coding retained_intron MGP_CASTEiJ_T0009881.1 MGP_CASTEiJ_G0008069.1 mouse_genomes_project 16 61951352 61951420 + Gm25986 miRNA miRNA MGP_CASTEiJ_T0044796.1 MGP_CASTEiJ_G0022238.1 mouse_genomes_project 16 88805663 88808012 - MGP_CASTEiJ_P0044796 Cldn8 protein_coding protein_coding MGP_CASTEiJ_T0012764.1 MGP_CASTEiJ_G0010927.1 mouse_genomes_project 16 16153686 16154109 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0042779.1 MGP_CASTEiJ_G0021730.1 mouse_genomes_project 16 1241820 1250864 - MGP_CASTEiJ_P0042779 Nmral1 protein_coding protein_coding MGP_CASTEiJ_T0042780.1 MGP_CASTEiJ_G0021730.1 mouse_genomes_project 16 1243080 1251111 - MGP_CASTEiJ_P0042780 Nmral1 protein_coding protein_coding MGP_CASTEiJ_T0042781.1 MGP_CASTEiJ_G0021730.1 mouse_genomes_project 16 1243080 1250911 - MGP_CASTEiJ_P0042781 Nmral1 protein_coding protein_coding MGP_CASTEiJ_T0042782.1 MGP_CASTEiJ_G0021730.1 mouse_genomes_project 16 1244058 1250867 - MGP_CASTEiJ_P0042782 Nmral1 protein_coding protein_coding MGP_CASTEiJ_T0042783.1 MGP_CASTEiJ_G0021730.1 mouse_genomes_project 16 1246260 1250843 - Nmral1 protein_coding retained_intron MGP_CASTEiJ_T0042784.1 MGP_CASTEiJ_G0021730.1 mouse_genomes_project 16 1247576 1250859 - Nmral1 protein_coding retained_intron MGP_CASTEiJ_T0043033.1 MGP_CASTEiJ_G0021797.1 mouse_genomes_project 16 10798397 10872801 - MGP_CASTEiJ_P0043033 Pdxdc1 protein_coding protein_coding MGP_CASTEiJ_T0043034.1 MGP_CASTEiJ_G0021797.1 mouse_genomes_project 16 10798828 10807459 - Pdxdc1 protein_coding processed_transcript MGP_CASTEiJ_T0043036.1 MGP_CASTEiJ_G0021797.1 mouse_genomes_project 16 10799517 10812609 - Pdxdc1 protein_coding processed_transcript MGP_CASTEiJ_T0043037.1 MGP_CASTEiJ_G0021797.1 mouse_genomes_project 16 10799522 10872695 - MGP_CASTEiJ_P0043037 Pdxdc1 protein_coding protein_coding MGP_CASTEiJ_T0043038.1 MGP_CASTEiJ_G0021797.1 mouse_genomes_project 16 10799638 10804211 - Pdxdc1 protein_coding processed_transcript MGP_CASTEiJ_T0043039.1 MGP_CASTEiJ_G0021797.1 mouse_genomes_project 16 10802721 10872656 - Pdxdc1 protein_coding retained_intron MGP_CASTEiJ_T0043040.1 MGP_CASTEiJ_G0021797.1 mouse_genomes_project 16 10802936 10806468 - Pdxdc1 protein_coding processed_transcript MGP_CASTEiJ_T0043041.1 MGP_CASTEiJ_G0021797.1 mouse_genomes_project 16 10804085 10807464 - Pdxdc1 protein_coding processed_transcript MGP_CASTEiJ_T0043042.1 MGP_CASTEiJ_G0021797.1 mouse_genomes_project 16 10804767 10805496 - Pdxdc1 protein_coding retained_intron MGP_CASTEiJ_T0043043.1 MGP_CASTEiJ_G0021797.1 mouse_genomes_project 16 10814905 10872729 - MGP_CASTEiJ_P0043043 Pdxdc1 protein_coding protein_coding MGP_CASTEiJ_T0043044.1 MGP_CASTEiJ_G0021797.1 mouse_genomes_project 16 10816470 10872805 - MGP_CASTEiJ_P0043044 Pdxdc1 protein_coding protein_coding MGP_CASTEiJ_T0043045.1 MGP_CASTEiJ_G0021797.1 mouse_genomes_project 16 10827444 10846902 - Pdxdc1 protein_coding retained_intron MGP_CASTEiJ_T0043046.1 MGP_CASTEiJ_G0021797.1 mouse_genomes_project 16 10846732 10872659 - Pdxdc1 protein_coding processed_transcript MGP_CASTEiJ_T0043047.1 MGP_CASTEiJ_G0021797.1 mouse_genomes_project 16 10852355 10872649 - Pdxdc1 protein_coding processed_transcript MGP_CASTEiJ_T0043906.1 MGP_CASTEiJ_G0022000.1 mouse_genomes_project 16 30423870 30439608 - MGP_CASTEiJ_P0043906 Slc51a protein_coding protein_coding MGP_CASTEiJ_T0011083.1 MGP_CASTEiJ_G0009271.1 mouse_genomes_project 16 65158580 65158894 + Gm22217 misc_RNA misc_RNA MGP_CASTEiJ_T0100715.1 MGP_CASTEiJ_G0037628.1 mouse_genomes_project 16 29650631 29650774 - Gm24879 snoRNA snoRNA MGP_CASTEiJ_T0042841.1 MGP_CASTEiJ_G0021748.1 mouse_genomes_project 16 1798819 1811520 + MGP_CASTEiJ_P0042841 Alg1 protein_coding protein_coding MGP_CASTEiJ_T0042842.1 MGP_CASTEiJ_G0021748.1 mouse_genomes_project 16 1798825 1810810 + MGP_CASTEiJ_P0042842 Alg1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042843.1 MGP_CASTEiJ_G0021748.1 mouse_genomes_project 16 1798836 1806385 + Alg1 protein_coding retained_intron MGP_CASTEiJ_T0042844.1 MGP_CASTEiJ_G0021748.1 mouse_genomes_project 16 1798836 1811529 + MGP_CASTEiJ_P0042844 Alg1 protein_coding protein_coding MGP_CASTEiJ_T0042845.1 MGP_CASTEiJ_G0021748.1 mouse_genomes_project 16 1800369 1807164 + Alg1 protein_coding processed_transcript MGP_CASTEiJ_T0042846.1 MGP_CASTEiJ_G0021748.1 mouse_genomes_project 16 1806720 1810345 + Alg1 protein_coding retained_intron MGP_CASTEiJ_T0012745.1 MGP_CASTEiJ_G0010908.1 mouse_genomes_project 16 6825021 6825228 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000041.1 MGP_CASTEiJ_G0000034.1 mouse_genomes_project 16 16238029 16238067 - MGP_CASTEiJ_P0000041 Iglj3p IG_J_gene IG_J_gene MGP_CASTEiJ_T0043012.1 MGP_CASTEiJ_G0021791.1 mouse_genomes_project 16 10460240 10602421 - MGP_CASTEiJ_P0043012 Parn protein_coding protein_coding MGP_CASTEiJ_T0044544.1 MGP_CASTEiJ_G0022150.1 mouse_genomes_project 16 56042764 56078587 - MGP_CASTEiJ_P0044544 Tmem45a2 protein_coding protein_coding MGP_CASTEiJ_T0043731.1 MGP_CASTEiJ_G0021953.1 mouse_genomes_project 16 24020756 24036652 - MGP_CASTEiJ_P0043731 Cldn1 protein_coding protein_coding MGP_CASTEiJ_T0012781.1 MGP_CASTEiJ_G0010944.1 mouse_genomes_project 16 29834823 29835703 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044645.1 MGP_CASTEiJ_G0022192.1 mouse_genomes_project 16 61958259 61968078 + MGP_CASTEiJ_P0044645 Stx19 protein_coding protein_coding MGP_CASTEiJ_T0043988.1 MGP_CASTEiJ_G0022014.1 mouse_genomes_project 16 31260551 31318960 + MGP_CASTEiJ_P0043988 Snx4 protein_coding protein_coding MGP_CASTEiJ_T0044814.1 MGP_CASTEiJ_G0022254.1 mouse_genomes_project 16 89199150 89199318 - MGP_CASTEiJ_P0044814 Krtap19-9a protein_coding protein_coding MGP_CASTEiJ_T0012785.1 MGP_CASTEiJ_G0010948.1 mouse_genomes_project 16 30547148 30547757 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000912.1 MGP_CASTEiJ_G0000850.1 mouse_genomes_project 16 648198 651863 - TEC TEC MGP_CASTEiJ_T0043057.1 MGP_CASTEiJ_G0021801.1 mouse_genomes_project 16 11098195 11151176 - MGP_CASTEiJ_P0043057 Marf1 protein_coding protein_coding MGP_CASTEiJ_T0044092.1 MGP_CASTEiJ_G0022046.1 mouse_genomes_project 16 34785358 34853202 - MGP_CASTEiJ_P0044092 Cd86 protein_coding protein_coding MGP_CASTEiJ_T0044093.1 MGP_CASTEiJ_G0022046.1 mouse_genomes_project 16 34785386 34786007 - Cd86 protein_coding processed_transcript MGP_CASTEiJ_T0044094.1 MGP_CASTEiJ_G0022046.1 mouse_genomes_project 16 34803099 34825170 - MGP_CASTEiJ_P0044094 Cd86 protein_coding protein_coding MGP_CASTEiJ_T0044095.1 MGP_CASTEiJ_G0022046.1 mouse_genomes_project 16 34846711 34853206 - Cd86 protein_coding processed_transcript MGP_CASTEiJ_T0003538.1 MGP_CASTEiJ_G0003211.1 mouse_genomes_project 16 14090824 14094352 + Gm15585 antisense antisense MGP_CASTEiJ_T0006654.1 MGP_CASTEiJ_G0005502.1 mouse_genomes_project 16 14264770 14270804 - Gm26635 lincRNA lincRNA MGP_CASTEiJ_T0009835.1 MGP_CASTEiJ_G0008023.1 mouse_genomes_project 16 380119 380207 + Gm23493 miRNA miRNA MGP_CASTEiJ_T0043081.1 MGP_CASTEiJ_G0021806.1 mouse_genomes_project 16 11528203 11535126 + MGP_CASTEiJ_P0043081 Gm1758 protein_coding protein_coding MGP_CASTEiJ_T0043183.1 MGP_CASTEiJ_G0021829.1 mouse_genomes_project 16 14130065 14132357 - MGP_CASTEiJ_P0043183 Sdf2l1 protein_coding protein_coding MGP_CASTEiJ_T0006703.1 MGP_CASTEiJ_G0005538.1 mouse_genomes_project 16 94040192 94078709 - 1700029J03Rik lincRNA lincRNA MGP_CASTEiJ_T0006704.1 MGP_CASTEiJ_G0005538.1 mouse_genomes_project 16 94045419 94114438 - 1700029J03Rik lincRNA lincRNA MGP_CASTEiJ_T0098344.1 MGP_CASTEiJ_G0035275.1 mouse_genomes_project 16 12839185 12840367 + pseudogene pseudogene MGP_CASTEiJ_T0044795.1 MGP_CASTEiJ_G0022237.1 mouse_genomes_project 16 88749383 88750553 - MGP_CASTEiJ_P0044795 Cldn17 protein_coding protein_coding MGP_CASTEiJ_T0043455.1 MGP_CASTEiJ_G0021884.1 mouse_genomes_project 16 16552266 16553361 - MGP_CASTEiJ_P0043455 Olfr164 protein_coding protein_coding MGP_CASTEiJ_T0043782.1 MGP_CASTEiJ_G0021967.1 mouse_genomes_project 16 27731783 27735624 - MGP_CASTEiJ_P0043782 Gm1968 protein_coding protein_coding MGP_CASTEiJ_T0044553.1 MGP_CASTEiJ_G0022156.1 mouse_genomes_project 16 56370269 56602532 + MGP_CASTEiJ_P0044553 Filip1l protein_coding protein_coding MGP_CASTEiJ_T0044554.1 MGP_CASTEiJ_G0022156.1 mouse_genomes_project 16 56370453 56542427 + MGP_CASTEiJ_P0044554 Filip1l protein_coding protein_coding MGP_CASTEiJ_T0044555.1 MGP_CASTEiJ_G0022156.1 mouse_genomes_project 16 56575811 56607441 + MGP_CASTEiJ_P0044555 Filip1l protein_coding protein_coding MGP_CASTEiJ_T0009843.1 MGP_CASTEiJ_G0008031.1 mouse_genomes_project 16 10377741 10377828 + Mir365-1 miRNA miRNA MGP_CASTEiJ_T0043312.1 MGP_CASTEiJ_G0021851.1 mouse_genomes_project 16 14894831 14897931 - MGP_CASTEiJ_P0043312 Car15 protein_coding protein_coding MGP_CASTEiJ_T0043753.1 MGP_CASTEiJ_G0021962.1 mouse_genomes_project 16 26567256 26674831 - MGP_CASTEiJ_P0043753 Mb21d2 protein_coding protein_coding MGP_CASTEiJ_T0044083.1 MGP_CASTEiJ_G0022040.1 mouse_genomes_project 16 34414067 34417504 + protein_coding retained_intron MGP_CASTEiJ_T0043754.1 MGP_CASTEiJ_G0021963.1 mouse_genomes_project 16 26960449 26981154 + MGP_CASTEiJ_P0043754 Hrasls protein_coding protein_coding MGP_CASTEiJ_T0043755.1 MGP_CASTEiJ_G0021963.1 mouse_genomes_project 16 26960862 26979015 + MGP_CASTEiJ_P0043755 Hrasls protein_coding protein_coding MGP_CASTEiJ_T0043756.1 MGP_CASTEiJ_G0021963.1 mouse_genomes_project 16 26960884 26978861 + Hrasls protein_coding processed_transcript MGP_CASTEiJ_T0043757.1 MGP_CASTEiJ_G0021963.1 mouse_genomes_project 16 26960924 26971040 + MGP_CASTEiJ_P0043757 Hrasls protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044485.1 MGP_CASTEiJ_G0022136.1 mouse_genomes_project 16 54183653 54246292 - MGP_CASTEiJ_P0044485 Zpld1 protein_coding protein_coding MGP_CASTEiJ_T0044486.1 MGP_CASTEiJ_G0022136.1 mouse_genomes_project 16 54183653 54259867 - MGP_CASTEiJ_P0044486 Zpld1 protein_coding protein_coding MGP_CASTEiJ_T0045133.1 MGP_CASTEiJ_G0022328.1 mouse_genomes_project 16 96886566 96897447 - MGP_CASTEiJ_P0045133 Psmg1 protein_coding protein_coding MGP_CASTEiJ_T0045134.1 MGP_CASTEiJ_G0022328.1 mouse_genomes_project 16 96886670 96897377 - MGP_CASTEiJ_P0045134 Psmg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045135.1 MGP_CASTEiJ_G0022328.1 mouse_genomes_project 16 96886670 96897377 - MGP_CASTEiJ_P0045135 Psmg1 protein_coding protein_coding MGP_CASTEiJ_T0045136.1 MGP_CASTEiJ_G0022328.1 mouse_genomes_project 16 96894462 96896386 - Psmg1 protein_coding retained_intron MGP_CASTEiJ_T0012744.1 MGP_CASTEiJ_G0010907.1 mouse_genomes_project 16 6824230 6824993 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012813.1 MGP_CASTEiJ_G0010976.1 mouse_genomes_project 16 66929788 66930311 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0043122.1 MGP_CASTEiJ_G0021820.1 mouse_genomes_project 16 13734963 13823050 - MGP_CASTEiJ_P0043122 Spag6l protein_coding protein_coding MGP_CASTEiJ_T0043123.1 MGP_CASTEiJ_G0021820.1 mouse_genomes_project 16 13759548 13823057 - Spag6l protein_coding retained_intron MGP_CASTEiJ_T0043124.1 MGP_CASTEiJ_G0021820.1 mouse_genomes_project 16 13785068 13823018 - Spag6l protein_coding processed_transcript MGP_CASTEiJ_T0043125.1 MGP_CASTEiJ_G0021820.1 mouse_genomes_project 16 13785102 13823081 - Spag6l protein_coding processed_transcript MGP_CASTEiJ_T0043126.1 MGP_CASTEiJ_G0021820.1 mouse_genomes_project 16 13813633 13823193 - Spag6l protein_coding processed_transcript MGP_CASTEiJ_T0043127.1 MGP_CASTEiJ_G0021820.1 mouse_genomes_project 16 13813902 13823050 - Spag6l protein_coding processed_transcript MGP_CASTEiJ_T0044547.1 MGP_CASTEiJ_G0022152.1 mouse_genomes_project 16 56173147 56183763 - MGP_CASTEiJ_P0044547 Nit2 protein_coding protein_coding MGP_CASTEiJ_T0043229.1 MGP_CASTEiJ_G0021838.1 mouse_genomes_project 16 14424269 14450905 + MGP_CASTEiJ_P0043229 Snap29 protein_coding protein_coding MGP_CASTEiJ_T0009861.1 MGP_CASTEiJ_G0008049.1 mouse_genomes_project 16 22454836 22454922 + Mir28a miRNA miRNA MGP_CASTEiJ_T0009871.1 MGP_CASTEiJ_G0008059.1 mouse_genomes_project 16 42137464 42137547 + Mir568 miRNA miRNA MGP_CASTEiJ_T0045213.1 MGP_CASTEiJ_G0022347.1 mouse_genomes_project 16 98970575 98985805 - MGP_CASTEiJ_P0045213 Zbtb21 protein_coding protein_coding MGP_CASTEiJ_T0045214.1 MGP_CASTEiJ_G0022347.1 mouse_genomes_project 16 98970575 98985805 - MGP_CASTEiJ_P0045214 Zbtb21 protein_coding protein_coding MGP_CASTEiJ_T0045215.1 MGP_CASTEiJ_G0022347.1 mouse_genomes_project 16 98970575 98985805 - MGP_CASTEiJ_P0045215 Zbtb21 protein_coding protein_coding MGP_CASTEiJ_T0043788.1 MGP_CASTEiJ_G0021970.1 mouse_genomes_project 16 28072063 28086431 - MGP_CASTEiJ_P0043788 Lrrc15 protein_coding protein_coding MGP_CASTEiJ_T0044421.1 MGP_CASTEiJ_G0022117.1 mouse_genomes_project 16 44950244 45063073 - MGP_CASTEiJ_P0044421 Nectin3 protein_coding protein_coding MGP_CASTEiJ_T0044422.1 MGP_CASTEiJ_G0022117.1 mouse_genomes_project 16 44957396 44973612 - MGP_CASTEiJ_P0044422 Nectin3 protein_coding protein_coding MGP_CASTEiJ_T0044423.1 MGP_CASTEiJ_G0022117.1 mouse_genomes_project 16 44957443 44973668 - MGP_CASTEiJ_P0044423 Nectin3 protein_coding protein_coding MGP_CASTEiJ_T0044424.1 MGP_CASTEiJ_G0022117.1 mouse_genomes_project 16 44957527 45010894 - MGP_CASTEiJ_P0044424 Nectin3 protein_coding protein_coding MGP_CASTEiJ_T0044425.1 MGP_CASTEiJ_G0022117.1 mouse_genomes_project 16 44957981 45000492 - MGP_CASTEiJ_P0044425 Nectin3 protein_coding protein_coding MGP_CASTEiJ_T0044426.1 MGP_CASTEiJ_G0022117.1 mouse_genomes_project 16 44998417 45062958 - MGP_CASTEiJ_P0044426 Nectin3 protein_coding protein_coding MGP_CASTEiJ_T0044427.1 MGP_CASTEiJ_G0022117.1 mouse_genomes_project 16 44998829 45001065 - Nectin3 protein_coding retained_intron MGP_CASTEiJ_T0044428.1 MGP_CASTEiJ_G0022117.1 mouse_genomes_project 16 45009551 45063073 - MGP_CASTEiJ_P0044428 Nectin3 protein_coding protein_coding MGP_CASTEiJ_T0044429.1 MGP_CASTEiJ_G0022117.1 mouse_genomes_project 16 45020195 45062878 - MGP_CASTEiJ_P0044429 Nectin3 protein_coding protein_coding MGP_CASTEiJ_T0044430.1 MGP_CASTEiJ_G0022117.1 mouse_genomes_project 16 45024377 45064644 - Nectin3 protein_coding processed_transcript MGP_CASTEiJ_T0044637.1 MGP_CASTEiJ_G0022190.1 mouse_genomes_project 16 61872529 61928496 - MGP_CASTEiJ_P0044637 Nsun3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044638.1 MGP_CASTEiJ_G0022190.1 mouse_genomes_project 16 61872529 61928496 - MGP_CASTEiJ_P0044638 Nsun3 protein_coding protein_coding MGP_CASTEiJ_T0044639.1 MGP_CASTEiJ_G0022190.1 mouse_genomes_project 16 61875235 61907620 - Nsun3 protein_coding processed_transcript MGP_CASTEiJ_T0044640.1 MGP_CASTEiJ_G0022190.1 mouse_genomes_project 16 61911188 61928485 - MGP_CASTEiJ_P0044640 Nsun3 protein_coding protein_coding MGP_CASTEiJ_T0044641.1 MGP_CASTEiJ_G0022190.1 mouse_genomes_project 16 61916660 61928537 - Nsun3 protein_coding processed_transcript MGP_CASTEiJ_T0044642.1 MGP_CASTEiJ_G0022190.1 mouse_genomes_project 16 61919745 61928432 - Nsun3 protein_coding processed_transcript MGP_CASTEiJ_T0042802.1 MGP_CASTEiJ_G0021734.1 mouse_genomes_project 16 1417456 1423001 - MGP_CASTEiJ_P0042802 Ubald1 protein_coding protein_coding MGP_CASTEiJ_T0042803.1 MGP_CASTEiJ_G0021734.1 mouse_genomes_project 16 1417466 1422502 - Ubald1 protein_coding retained_intron MGP_CASTEiJ_T0043478.1 MGP_CASTEiJ_G0021897.1 mouse_genomes_project 16 17338295 17369816 + MGP_CASTEiJ_P0043478 Klhl24 protein_coding protein_coding MGP_CASTEiJ_T0042901.1 MGP_CASTEiJ_G0021763.1 mouse_genomes_project 16 6977765 7036532 + MGP_CASTEiJ_P0042901 Atf7ip2 protein_coding protein_coding MGP_CASTEiJ_T0042902.1 MGP_CASTEiJ_G0021763.1 mouse_genomes_project 16 6977959 7030777 + MGP_CASTEiJ_P0042902 Atf7ip2 protein_coding protein_coding MGP_CASTEiJ_T0042903.1 MGP_CASTEiJ_G0021763.1 mouse_genomes_project 16 6977975 7034302 + MGP_CASTEiJ_P0042903 Atf7ip2 protein_coding protein_coding MGP_CASTEiJ_T0042904.1 MGP_CASTEiJ_G0021763.1 mouse_genomes_project 16 6977979 6997813 + MGP_CASTEiJ_P0042904 Atf7ip2 protein_coding protein_coding MGP_CASTEiJ_T0042905.1 MGP_CASTEiJ_G0021763.1 mouse_genomes_project 16 6978000 6999125 + Atf7ip2 protein_coding retained_intron MGP_CASTEiJ_T0003581.1 MGP_CASTEiJ_G0003245.1 mouse_genomes_project 16 97072038 97074151 - Gm15317 antisense antisense MGP_CASTEiJ_T0099514.1 MGP_CASTEiJ_G0036427.1 mouse_genomes_project 16 91819333 91819416 - Gm24695 snRNA snRNA MGP_CASTEiJ_T0043314.1 MGP_CASTEiJ_G0021853.1 mouse_genomes_project 16 14899127 14950123 - protein_coding retained_intron MGP_CASTEiJ_T0043315.1 MGP_CASTEiJ_G0021853.1 mouse_genomes_project 16 14900000 14950129 - MGP_CASTEiJ_P0043315 protein_coding protein_coding MGP_CASTEiJ_T0043316.1 MGP_CASTEiJ_G0021853.1 mouse_genomes_project 16 14900000 14950162 - MGP_CASTEiJ_P0043316 protein_coding protein_coding MGP_CASTEiJ_T0043317.1 MGP_CASTEiJ_G0021853.1 mouse_genomes_project 16 14900006 14950126 - MGP_CASTEiJ_P0043317 protein_coding protein_coding MGP_CASTEiJ_T0043318.1 MGP_CASTEiJ_G0021853.1 mouse_genomes_project 16 14900929 14950062 - MGP_CASTEiJ_P0043318 protein_coding protein_coding MGP_CASTEiJ_T0043319.1 MGP_CASTEiJ_G0021853.1 mouse_genomes_project 16 14908915 14950118 - protein_coding retained_intron MGP_CASTEiJ_T0043320.1 MGP_CASTEiJ_G0021853.1 mouse_genomes_project 16 14916260 14952569 - protein_coding processed_transcript MGP_CASTEiJ_T0043321.1 MGP_CASTEiJ_G0021853.1 mouse_genomes_project 16 14951046 14952615 - protein_coding processed_transcript MGP_CASTEiJ_T0044059.1 MGP_CASTEiJ_G0022033.1 mouse_genomes_project 16 34114873 34127467 - MGP_CASTEiJ_P0044059 Dtx3l protein_coding protein_coding MGP_CASTEiJ_T0044060.1 MGP_CASTEiJ_G0022033.1 mouse_genomes_project 16 34120178 34127467 - MGP_CASTEiJ_P0044060 Dtx3l protein_coding protein_coding MGP_CASTEiJ_T0009875.1 MGP_CASTEiJ_G0008063.1 mouse_genomes_project 16 49489922 49490036 + Mir6363 miRNA miRNA MGP_CASTEiJ_T0009888.1 MGP_CASTEiJ_G0008076.1 mouse_genomes_project 16 77445676 77445747 + Mir125b-2 miRNA miRNA MGP_CASTEiJ_T0044948.1 MGP_CASTEiJ_G0022297.1 mouse_genomes_project 16 92178631 92185582 - MGP_CASTEiJ_P0044948 Donson protein_coding protein_coding MGP_CASTEiJ_T0044949.1 MGP_CASTEiJ_G0022297.1 mouse_genomes_project 16 92180617 92189902 - Donson protein_coding retained_intron MGP_CASTEiJ_T0044950.1 MGP_CASTEiJ_G0022297.1 mouse_genomes_project 16 92180617 92189902 - MGP_CASTEiJ_P0044950 Donson protein_coding protein_coding MGP_CASTEiJ_T0044951.1 MGP_CASTEiJ_G0022297.1 mouse_genomes_project 16 92180617 92189902 - MGP_CASTEiJ_P0044951 Donson protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044952.1 MGP_CASTEiJ_G0022297.1 mouse_genomes_project 16 92180874 92189854 - MGP_CASTEiJ_P0044952 Donson protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044953.1 MGP_CASTEiJ_G0022297.1 mouse_genomes_project 16 92180874 92189008 - MGP_CASTEiJ_P0044953 Donson protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044954.1 MGP_CASTEiJ_G0022297.1 mouse_genomes_project 16 92180874 92189008 - MGP_CASTEiJ_P0044954 Donson protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044955.1 MGP_CASTEiJ_G0022297.1 mouse_genomes_project 16 92181184 92189840 - MGP_CASTEiJ_P0044955 Donson protein_coding protein_coding MGP_CASTEiJ_T0044956.1 MGP_CASTEiJ_G0022297.1 mouse_genomes_project 16 92181245 92189849 - MGP_CASTEiJ_P0044956 Donson protein_coding protein_coding MGP_CASTEiJ_T0100751.1 MGP_CASTEiJ_G0037664.1 mouse_genomes_project 16 91021435 91021557 + Gm23406 snoRNA snoRNA MGP_CASTEiJ_T0042922.1 MGP_CASTEiJ_G0021769.1 mouse_genomes_project 16 7321561 7365292 - MGP_CASTEiJ_P0042922 Dexi protein_coding protein_coding MGP_CASTEiJ_T0042923.1 MGP_CASTEiJ_G0021769.1 mouse_genomes_project 16 7352519 7354126 - Dexi protein_coding processed_transcript MGP_CASTEiJ_T0042924.1 MGP_CASTEiJ_G0021769.1 mouse_genomes_project 16 7352519 7365292 - MGP_CASTEiJ_P0042924 Dexi protein_coding protein_coding MGP_CASTEiJ_T0100748.1 MGP_CASTEiJ_G0037661.1 mouse_genomes_project 16 87564787 87564923 - Gm25896 snoRNA snoRNA MGP_CASTEiJ_T0044612.1 MGP_CASTEiJ_G0022179.1 mouse_genomes_project 16 58184938 58185868 - MGP_CASTEiJ_P0044612 Olfr196 protein_coding protein_coding MGP_CASTEiJ_T0044807.1 MGP_CASTEiJ_G0022249.1 mouse_genomes_project 16 89076758 89086045 + MGP_CASTEiJ_P0044807 Krtap15 protein_coding protein_coding MGP_CASTEiJ_T0044809.1 MGP_CASTEiJ_G0022249.1 mouse_genomes_project 16 89085554 89086405 + MGP_CASTEiJ_P0044809 Krtap15 protein_coding protein_coding MGP_CASTEiJ_T0043667.1 MGP_CASTEiJ_G0021937.1 mouse_genomes_project 16 20437114 20496775 - MGP_CASTEiJ_P0043667 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009867.1 MGP_CASTEiJ_G0008055.1 mouse_genomes_project 16 34982013 34982073 + Gm22617 miRNA miRNA MGP_CASTEiJ_T0003546.1 MGP_CASTEiJ_G0003218.1 mouse_genomes_project 16 30036611 30043218 + Gm15729 antisense antisense MGP_CASTEiJ_T0100739.1 MGP_CASTEiJ_G0037652.1 mouse_genomes_project 16 73732962 73733097 - Gm22163 snoRNA snoRNA MGP_CASTEiJ_T0043894.1 MGP_CASTEiJ_G0021994.1 mouse_genomes_project 16 30199686 30202956 + MGP_CASTEiJ_P0043894 Smco1 protein_coding protein_coding MGP_CASTEiJ_T0043813.1 MGP_CASTEiJ_G0021976.1 mouse_genomes_project 16 28815687 28949489 - MGP_CASTEiJ_P0043813 Xxylt1 protein_coding protein_coding MGP_CASTEiJ_T0043814.1 MGP_CASTEiJ_G0021976.1 mouse_genomes_project 16 28817521 28929369 - Xxylt1 protein_coding processed_transcript MGP_CASTEiJ_T0043815.1 MGP_CASTEiJ_G0021976.1 mouse_genomes_project 16 28873815 28937801 - Xxylt1 protein_coding processed_transcript MGP_CASTEiJ_T0043816.1 MGP_CASTEiJ_G0021976.1 mouse_genomes_project 16 28873857 28935803 - Xxylt1 protein_coding processed_transcript MGP_CASTEiJ_T0012794.1 MGP_CASTEiJ_G0010957.1 mouse_genomes_project 16 37048958 37050539 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044552.1 MGP_CASTEiJ_G0022155.1 mouse_genomes_project 16 56309948 56631693 - MGP_CASTEiJ_P0044552 Cmss1 protein_coding protein_coding MGP_CASTEiJ_T0012800.1 MGP_CASTEiJ_G0010963.1 mouse_genomes_project 16 43975765 43978759 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0043509.1 MGP_CASTEiJ_G0021903.1 mouse_genomes_project 16 17756558 17770532 + MGP_CASTEiJ_P0043509 Eif2b5 protein_coding protein_coding MGP_CASTEiJ_T0043510.1 MGP_CASTEiJ_G0021903.1 mouse_genomes_project 16 17765977 17769900 + MGP_CASTEiJ_P0043510 Eif2b5 protein_coding protein_coding MGP_CASTEiJ_T0044924.1 MGP_CASTEiJ_G0022293.1 mouse_genomes_project 16 92070416 92094526 - MGP_CASTEiJ_P0044924 Tmem50b protein_coding protein_coding MGP_CASTEiJ_T0044925.1 MGP_CASTEiJ_G0022293.1 mouse_genomes_project 16 92071673 92094391 - MGP_CASTEiJ_P0044925 Tmem50b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044926.1 MGP_CASTEiJ_G0022293.1 mouse_genomes_project 16 92076140 92094526 - MGP_CASTEiJ_P0044926 Tmem50b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044819.1 MGP_CASTEiJ_G0022259.1 mouse_genomes_project 16 89322699 89323231 - MGP_CASTEiJ_P0044819 protein_coding protein_coding MGP_CASTEiJ_T0043899.1 MGP_CASTEiJ_G0021997.1 mouse_genomes_project 16 30340858 30350300 + MGP_CASTEiJ_P0043899 Tm4sf19 protein_coding protein_coding MGP_CASTEiJ_T0044787.1 MGP_CASTEiJ_G0022235.1 mouse_genomes_project 16 87873474 87913995 + MGP_CASTEiJ_P0044787 Bach1 protein_coding protein_coding MGP_CASTEiJ_T0044788.1 MGP_CASTEiJ_G0022235.1 mouse_genomes_project 16 87873533 87902516 + Bach1 protein_coding retained_intron MGP_CASTEiJ_T0011074.1 MGP_CASTEiJ_G0009262.1 mouse_genomes_project 16 5140240 5140529 - Gm25782 misc_RNA misc_RNA MGP_CASTEiJ_T0043327.1 MGP_CASTEiJ_G0021858.1 mouse_genomes_project 16 14987747 14990756 - MGP_CASTEiJ_P0043327 Slc25a1 protein_coding protein_coding MGP_CASTEiJ_T0043328.1 MGP_CASTEiJ_G0021858.1 mouse_genomes_project 16 14988218 14989880 - Slc25a1 protein_coding retained_intron MGP_CASTEiJ_T0043329.1 MGP_CASTEiJ_G0021858.1 mouse_genomes_project 16 14988252 14989953 - MGP_CASTEiJ_P0043329 Slc25a1 protein_coding protein_coding MGP_CASTEiJ_T0043330.1 MGP_CASTEiJ_G0021858.1 mouse_genomes_project 16 14988801 14990424 - Slc25a1 protein_coding retained_intron MGP_CASTEiJ_T0043331.1 MGP_CASTEiJ_G0021858.1 mouse_genomes_project 16 14989686 14990666 - Slc25a1 protein_coding retained_intron MGP_CASTEiJ_T0043332.1 MGP_CASTEiJ_G0021858.1 mouse_genomes_project 16 14989953 14990746 - Slc25a1 protein_coding retained_intron MGP_CASTEiJ_T0011079.1 MGP_CASTEiJ_G0009267.1 mouse_genomes_project 16 39459968 39460119 - Gm27717 misc_RNA misc_RNA MGP_CASTEiJ_T0044194.1 MGP_CASTEiJ_G0022068.1 mouse_genomes_project 16 36634918 36650209 + MGP_CASTEiJ_P0044194 protein_coding protein_coding MGP_CASTEiJ_T0011086.1 MGP_CASTEiJ_G0009274.1 mouse_genomes_project 16 84723119 84723441 - Gm25292 misc_RNA misc_RNA MGP_CASTEiJ_T0101545.1 MGP_CASTEiJ_G0038429.1 mouse_genomes_project 16 48120035 48120410 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101546.1 MGP_CASTEiJ_G0038429.1 mouse_genomes_project 16 48120164 48121173 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0043003.1 MGP_CASTEiJ_G0021789.1 mouse_genomes_project 16 10012736 10052514 + MGP_CASTEiJ_P0043003 Ercc4 protein_coding protein_coding MGP_CASTEiJ_T0043004.1 MGP_CASTEiJ_G0021789.1 mouse_genomes_project 16 10012969 10030867 + Ercc4 protein_coding retained_intron MGP_CASTEiJ_T0043005.1 MGP_CASTEiJ_G0021789.1 mouse_genomes_project 16 10012987 10034679 + MGP_CASTEiJ_P0043005 Ercc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043006.1 MGP_CASTEiJ_G0021789.1 mouse_genomes_project 16 10016977 10054399 + MGP_CASTEiJ_P0043006 Ercc4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043007.1 MGP_CASTEiJ_G0021789.1 mouse_genomes_project 16 10039383 10046874 + Ercc4 protein_coding processed_transcript MGP_CASTEiJ_T0003533.1 MGP_CASTEiJ_G0003207.1 mouse_genomes_project 16 8573330 8577060 - Gm4279 antisense antisense MGP_CASTEiJ_T0098524.1 MGP_CASTEiJ_G0035455.1 mouse_genomes_project 16 1896511 1896633 - n-R5s30 rRNA rRNA MGP_CASTEiJ_T0042751.1 MGP_CASTEiJ_G0021725.1 mouse_genomes_project 16 1110748 1135397 + MGP_CASTEiJ_P0042751 Glis2 protein_coding protein_coding MGP_CASTEiJ_T0042752.1 MGP_CASTEiJ_G0021725.1 mouse_genomes_project 16 1117228 1128561 + MGP_CASTEiJ_P0042752 Glis2 protein_coding protein_coding MGP_CASTEiJ_T0042753.1 MGP_CASTEiJ_G0021725.1 mouse_genomes_project 16 1126769 1135382 + Glis2 protein_coding retained_intron MGP_CASTEiJ_T0042754.1 MGP_CASTEiJ_G0021725.1 mouse_genomes_project 16 1129560 1133097 + Glis2 protein_coding retained_intron MGP_CASTEiJ_T0042755.1 MGP_CASTEiJ_G0021725.1 mouse_genomes_project 16 1129778 1144355 + Glis2 protein_coding processed_transcript MGP_CASTEiJ_T0044763.1 MGP_CASTEiJ_G0022230.1 mouse_genomes_project 16 87521086 87578435 - MGP_CASTEiJ_P0044763 Ltn1 protein_coding protein_coding MGP_CASTEiJ_T0043120.1 MGP_CASTEiJ_G0021819.1 mouse_genomes_project 16 13630600 13631742 - MGP_CASTEiJ_P0043120 Olfr19 protein_coding protein_coding MGP_CASTEiJ_T0043121.1 MGP_CASTEiJ_G0021819.1 mouse_genomes_project 16 13631059 13634117 - MGP_CASTEiJ_P0043121 Olfr19 protein_coding protein_coding MGP_CASTEiJ_T0043334.1 MGP_CASTEiJ_G0021860.1 mouse_genomes_project 16 15112490 15130720 + MGP_CASTEiJ_P0043334 Dgcr6 protein_coding protein_coding MGP_CASTEiJ_T0043335.1 MGP_CASTEiJ_G0021860.1 mouse_genomes_project 16 15112506 15116169 + Dgcr6 protein_coding processed_transcript MGP_CASTEiJ_T0043336.1 MGP_CASTEiJ_G0021860.1 mouse_genomes_project 16 15112522 15126090 + Dgcr6 protein_coding processed_transcript MGP_CASTEiJ_T0043338.1 MGP_CASTEiJ_G0021860.1 mouse_genomes_project 16 15124741 15130702 + MGP_CASTEiJ_P0043338 Dgcr6 protein_coding protein_coding MGP_CASTEiJ_T0043339.1 MGP_CASTEiJ_G0021860.1 mouse_genomes_project 16 15126024 15130718 + MGP_CASTEiJ_P0043339 Dgcr6 protein_coding protein_coding MGP_CASTEiJ_T0043340.1 MGP_CASTEiJ_G0021860.1 mouse_genomes_project 16 15126029 15130992 + MGP_CASTEiJ_P0043340 Dgcr6 protein_coding protein_coding MGP_CASTEiJ_T0043341.1 MGP_CASTEiJ_G0021860.1 mouse_genomes_project 16 15126071 15130997 + MGP_CASTEiJ_P0043341 Dgcr6 protein_coding protein_coding MGP_CASTEiJ_T0043342.1 MGP_CASTEiJ_G0021860.1 mouse_genomes_project 16 15128839 15130703 + Dgcr6 protein_coding processed_transcript MGP_CASTEiJ_T0006691.1 MGP_CASTEiJ_G0005531.1 mouse_genomes_project 16 75750948 75759886 + Gm15555 lincRNA lincRNA MGP_CASTEiJ_T0043632.1 MGP_CASTEiJ_G0021926.1 mouse_genomes_project 16 19398318 19438309 + MGP_CASTEiJ_P0043632 Senp2 protein_coding protein_coding MGP_CASTEiJ_T0044727.1 MGP_CASTEiJ_G0022219.1 mouse_genomes_project 16 78784643 78914013 - MGP_CASTEiJ_P0044727 Tmprss15 protein_coding protein_coding MGP_CASTEiJ_T0044728.1 MGP_CASTEiJ_G0022219.1 mouse_genomes_project 16 78785097 78914018 - MGP_CASTEiJ_P0044728 Tmprss15 protein_coding protein_coding MGP_CASTEiJ_T0043949.1 MGP_CASTEiJ_G0022008.1 mouse_genomes_project 16 30852311 30866284 + Fyttd1 protein_coding processed_transcript MGP_CASTEiJ_T0043950.1 MGP_CASTEiJ_G0022008.1 mouse_genomes_project 16 30852524 30878412 + MGP_CASTEiJ_P0043950 Fyttd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043951.1 MGP_CASTEiJ_G0022008.1 mouse_genomes_project 16 30852592 30888471 + MGP_CASTEiJ_P0043951 Fyttd1 protein_coding protein_coding MGP_CASTEiJ_T0043952.1 MGP_CASTEiJ_G0022008.1 mouse_genomes_project 16 30852595 30888559 + MGP_CASTEiJ_P0043952 Fyttd1 protein_coding protein_coding MGP_CASTEiJ_T0043953.1 MGP_CASTEiJ_G0022008.1 mouse_genomes_project 16 30852624 30873140 + Fyttd1 protein_coding processed_transcript MGP_CASTEiJ_T0043954.1 MGP_CASTEiJ_G0022008.1 mouse_genomes_project 16 30852624 30870099 + Fyttd1 protein_coding retained_intron MGP_CASTEiJ_T0043955.1 MGP_CASTEiJ_G0022008.1 mouse_genomes_project 16 30852662 30878208 + Fyttd1 protein_coding retained_intron MGP_CASTEiJ_T0043956.1 MGP_CASTEiJ_G0022008.1 mouse_genomes_project 16 30857815 30884916 + MGP_CASTEiJ_P0043956 Fyttd1 protein_coding protein_coding MGP_CASTEiJ_T0043957.1 MGP_CASTEiJ_G0022008.1 mouse_genomes_project 16 30869933 30885065 + Fyttd1 protein_coding processed_transcript MGP_CASTEiJ_T0043958.1 MGP_CASTEiJ_G0022008.1 mouse_genomes_project 16 30878106 30884988 + Fyttd1 protein_coding retained_intron MGP_CASTEiJ_T0043959.1 MGP_CASTEiJ_G0022008.1 mouse_genomes_project 16 30879583 30884924 + Fyttd1 protein_coding retained_intron MGP_CASTEiJ_T0043960.1 MGP_CASTEiJ_G0022008.1 mouse_genomes_project 16 30881458 30884890 + Fyttd1 protein_coding retained_intron MGP_CASTEiJ_T0043479.1 MGP_CASTEiJ_G0021898.1 mouse_genomes_project 16 17389150 17481345 + MGP_CASTEiJ_P0043479 Yeats2 protein_coding protein_coding MGP_CASTEiJ_T0043480.1 MGP_CASTEiJ_G0021898.1 mouse_genomes_project 16 17389150 17481345 + MGP_CASTEiJ_P0043480 Yeats2 protein_coding protein_coding MGP_CASTEiJ_T0044076.1 MGP_CASTEiJ_G0022036.1 mouse_genomes_project 16 34238165 34239952 + MGP_CASTEiJ_P0044076 Wdr5b protein_coding protein_coding MGP_CASTEiJ_T0099486.1 MGP_CASTEiJ_G0036399.1 mouse_genomes_project 16 19628829 19628937 + Gm25810 snRNA snRNA MGP_CASTEiJ_T0099497.1 MGP_CASTEiJ_G0036410.1 mouse_genomes_project 16 36244283 36244423 + Gm25140 snRNA snRNA MGP_CASTEiJ_T0043362.1 MGP_CASTEiJ_G0021867.1 mouse_genomes_project 16 15328018 15365246 - MGP_CASTEiJ_P0043362 Dgcr8 protein_coding protein_coding MGP_CASTEiJ_T0043363.1 MGP_CASTEiJ_G0021867.1 mouse_genomes_project 16 15328027 15365249 - MGP_CASTEiJ_P0043363 Dgcr8 protein_coding protein_coding MGP_CASTEiJ_T0043364.1 MGP_CASTEiJ_G0021867.1 mouse_genomes_project 16 15329011 15340800 - Dgcr8 protein_coding processed_transcript MGP_CASTEiJ_T0043365.1 MGP_CASTEiJ_G0021867.1 mouse_genomes_project 16 15329512 15331191 - Dgcr8 protein_coding processed_transcript MGP_CASTEiJ_T0043366.1 MGP_CASTEiJ_G0021867.1 mouse_genomes_project 16 15346754 15360609 - Dgcr8 protein_coding retained_intron MGP_CASTEiJ_T0043367.1 MGP_CASTEiJ_G0021867.1 mouse_genomes_project 16 15346937 15356308 - Dgcr8 protein_coding retained_intron MGP_CASTEiJ_T0044346.1 MGP_CASTEiJ_G0022100.1 mouse_genomes_project 16 43353053 43383238 + MGP_CASTEiJ_P0044346 Cd200r4 protein_coding protein_coding MGP_CASTEiJ_T0044347.1 MGP_CASTEiJ_G0022100.1 mouse_genomes_project 16 43353076 43383238 + MGP_CASTEiJ_P0044347 Cd200r4 protein_coding protein_coding MGP_CASTEiJ_T0043094.1 MGP_CASTEiJ_G0021814.1 mouse_genomes_project 16 12841165 13099387 - MGP_CASTEiJ_P0043094 Spidr protein_coding protein_coding MGP_CASTEiJ_T0011087.1 MGP_CASTEiJ_G0009275.1 mouse_genomes_project 16 94380155 94380436 + Gm22344 misc_RNA misc_RNA MGP_CASTEiJ_T0044180.1 MGP_CASTEiJ_G0022062.1 mouse_genomes_project 16 36123075 36146809 + MGP_CASTEiJ_P0044180 Lrrc58 protein_coding protein_coding MGP_CASTEiJ_T0012768.1 MGP_CASTEiJ_G0010931.1 mouse_genomes_project 16 16973503 16974179 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009857.1 MGP_CASTEiJ_G0008045.1 mouse_genomes_project 16 17865942 17866027 + Mir1224 miRNA miRNA MGP_CASTEiJ_T0009848.1 MGP_CASTEiJ_G0008036.1 mouse_genomes_project 16 14124028 14124110 - Mir130b miRNA miRNA MGP_CASTEiJ_T0043989.1 MGP_CASTEiJ_G0022015.1 mouse_genomes_project 16 31405747 31548583 + MGP_CASTEiJ_P0043989 Zfp148 protein_coding protein_coding MGP_CASTEiJ_T0043990.1 MGP_CASTEiJ_G0022015.1 mouse_genomes_project 16 31429186 31543093 + MGP_CASTEiJ_P0043990 Zfp148 protein_coding protein_coding MGP_CASTEiJ_T0012803.1 MGP_CASTEiJ_G0010966.1 mouse_genomes_project 16 48109127 48109508 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0043466.1 MGP_CASTEiJ_G0021894.1 mouse_genomes_project 16 17000430 17012367 + MGP_CASTEiJ_P0043466 B3gnt5 protein_coding protein_coding MGP_CASTEiJ_T0043467.1 MGP_CASTEiJ_G0021894.1 mouse_genomes_project 16 17000456 17012884 + MGP_CASTEiJ_P0043467 B3gnt5 protein_coding protein_coding MGP_CASTEiJ_T0043468.1 MGP_CASTEiJ_G0021894.1 mouse_genomes_project 16 17000456 17012594 + MGP_CASTEiJ_P0043468 B3gnt5 protein_coding protein_coding MGP_CASTEiJ_T0043469.1 MGP_CASTEiJ_G0021894.1 mouse_genomes_project 16 17000617 17005782 + B3gnt5 protein_coding processed_transcript MGP_CASTEiJ_T0043470.1 MGP_CASTEiJ_G0021894.1 mouse_genomes_project 16 17000804 17008982 + B3gnt5 protein_coding retained_intron MGP_CASTEiJ_T0043471.1 MGP_CASTEiJ_G0021894.1 mouse_genomes_project 16 17000805 17004532 + B3gnt5 protein_coding retained_intron MGP_CASTEiJ_T0043472.1 MGP_CASTEiJ_G0021894.1 mouse_genomes_project 16 17001270 17010768 + MGP_CASTEiJ_P0043472 B3gnt5 protein_coding protein_coding MGP_CASTEiJ_T0102101.1 MGP_CASTEiJ_G0038826.1 mouse_genomes_project 16 20475661 20478279 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0043895.1 MGP_CASTEiJ_G0021995.1 mouse_genomes_project 16 30205563 30220923 + MGP_CASTEiJ_P0043895 Rnf168 protein_coding protein_coding MGP_CASTEiJ_T0043896.1 MGP_CASTEiJ_G0021995.1 mouse_genomes_project 16 30205565 30230262 + MGP_CASTEiJ_P0043896 Rnf168 protein_coding protein_coding MGP_CASTEiJ_T0043897.1 MGP_CASTEiJ_G0021995.1 mouse_genomes_project 16 30205565 30230790 + MGP_CASTEiJ_P0043897 Rnf168 protein_coding protein_coding MGP_CASTEiJ_T0016782.1 MGP_CASTEiJ_G0014643.1 mouse_genomes_project 16 92190047 92219932 + Gm10785 processed_transcript processed_transcript MGP_CASTEiJ_T0044523.1 MGP_CASTEiJ_G0022145.1 mouse_genomes_project 16 55189498 55267251 + MGP_CASTEiJ_P0044523 Impg2 protein_coding protein_coding MGP_CASTEiJ_T0044524.1 MGP_CASTEiJ_G0022145.1 mouse_genomes_project 16 55189517 55197840 + Impg2 protein_coding processed_transcript MGP_CASTEiJ_T0044525.1 MGP_CASTEiJ_G0022145.1 mouse_genomes_project 16 55189523 55269878 + MGP_CASTEiJ_P0044525 Impg2 protein_coding protein_coding MGP_CASTEiJ_T0044526.1 MGP_CASTEiJ_G0022145.1 mouse_genomes_project 16 55266278 55267131 + Impg2 protein_coding processed_transcript MGP_CASTEiJ_T0045153.1 MGP_CASTEiJ_G0022331.1 mouse_genomes_project 16 97071969 97081579 + Wrb protein_coding retained_intron MGP_CASTEiJ_T0045154.1 MGP_CASTEiJ_G0022331.1 mouse_genomes_project 16 97071969 97073318 + Wrb protein_coding processed_transcript MGP_CASTEiJ_T0045155.1 MGP_CASTEiJ_G0022331.1 mouse_genomes_project 16 97071969 97084663 + MGP_CASTEiJ_P0045155 Wrb protein_coding protein_coding MGP_CASTEiJ_T0045156.1 MGP_CASTEiJ_G0022331.1 mouse_genomes_project 16 97071973 97078611 + MGP_CASTEiJ_P0045156 Wrb protein_coding protein_coding MGP_CASTEiJ_T0043662.1 MGP_CASTEiJ_G0021935.1 mouse_genomes_project 16 20379614 20396403 + MGP_CASTEiJ_P0043662 Fetub protein_coding protein_coding MGP_CASTEiJ_T0043663.1 MGP_CASTEiJ_G0021935.1 mouse_genomes_project 16 20381387 20396397 + MGP_CASTEiJ_P0043663 Fetub protein_coding protein_coding MGP_CASTEiJ_T0043664.1 MGP_CASTEiJ_G0021935.1 mouse_genomes_project 16 20381474 20396403 + MGP_CASTEiJ_P0043664 Fetub protein_coding protein_coding MGP_CASTEiJ_T0043665.1 MGP_CASTEiJ_G0021935.1 mouse_genomes_project 16 20382952 20396394 + MGP_CASTEiJ_P0043665 Fetub protein_coding protein_coding MGP_CASTEiJ_T0042689.1 MGP_CASTEiJ_G0021713.1 mouse_genomes_project 16 321987 353727 + MGP_CASTEiJ_P0042689 Naa60 protein_coding protein_coding MGP_CASTEiJ_T0042691.1 MGP_CASTEiJ_G0021713.1 mouse_genomes_project 16 337404 357676 + MGP_CASTEiJ_P0042691 Naa60 protein_coding protein_coding MGP_CASTEiJ_T0042692.1 MGP_CASTEiJ_G0021713.1 mouse_genomes_project 16 337409 350261 + MGP_CASTEiJ_P0042692 Naa60 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042693.1 MGP_CASTEiJ_G0021713.1 mouse_genomes_project 16 337424 356654 + MGP_CASTEiJ_P0042693 Naa60 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042694.1 MGP_CASTEiJ_G0021713.1 mouse_genomes_project 16 337427 350292 + MGP_CASTEiJ_P0042694 Naa60 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042695.1 MGP_CASTEiJ_G0021713.1 mouse_genomes_project 16 337454 353316 + Naa60 protein_coding retained_intron MGP_CASTEiJ_T0042696.1 MGP_CASTEiJ_G0021713.1 mouse_genomes_project 16 347287 354730 + MGP_CASTEiJ_P0042696 Naa60 protein_coding protein_coding MGP_CASTEiJ_T0042697.1 MGP_CASTEiJ_G0021713.1 mouse_genomes_project 16 347287 354855 + MGP_CASTEiJ_P0042697 Naa60 protein_coding protein_coding MGP_CASTEiJ_T0100746.1 MGP_CASTEiJ_G0037659.1 mouse_genomes_project 16 85293661 85293814 + Gm27295 snoRNA snoRNA MGP_CASTEiJ_T0044935.1 MGP_CASTEiJ_G0022296.1 mouse_genomes_project 16 92148319 92180560 + MGP_CASTEiJ_P0044935 Son protein_coding protein_coding MGP_CASTEiJ_T0044936.1 MGP_CASTEiJ_G0022296.1 mouse_genomes_project 16 92148690 92166620 + MGP_CASTEiJ_P0044936 Son protein_coding protein_coding MGP_CASTEiJ_T0044937.1 MGP_CASTEiJ_G0022296.1 mouse_genomes_project 16 92148690 92180548 + MGP_CASTEiJ_P0044937 Son protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044938.1 MGP_CASTEiJ_G0022296.1 mouse_genomes_project 16 92148690 92180548 + MGP_CASTEiJ_P0044938 Son protein_coding protein_coding MGP_CASTEiJ_T0044939.1 MGP_CASTEiJ_G0022296.1 mouse_genomes_project 16 92148691 92164948 + MGP_CASTEiJ_P0044939 Son protein_coding protein_coding MGP_CASTEiJ_T0044940.1 MGP_CASTEiJ_G0022296.1 mouse_genomes_project 16 92148696 92180574 + MGP_CASTEiJ_P0044940 Son protein_coding protein_coding MGP_CASTEiJ_T0044941.1 MGP_CASTEiJ_G0022296.1 mouse_genomes_project 16 92160740 92180545 + MGP_CASTEiJ_P0044941 Son protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044942.1 MGP_CASTEiJ_G0022296.1 mouse_genomes_project 16 92165133 92173522 + Son protein_coding processed_transcript MGP_CASTEiJ_T0044943.1 MGP_CASTEiJ_G0022296.1 mouse_genomes_project 16 92172731 92174091 + Son protein_coding processed_transcript MGP_CASTEiJ_T0044944.1 MGP_CASTEiJ_G0022296.1 mouse_genomes_project 16 92174824 92178964 + Son protein_coding processed_transcript MGP_CASTEiJ_T0044945.1 MGP_CASTEiJ_G0022296.1 mouse_genomes_project 16 92175054 92179472 + Son protein_coding processed_transcript MGP_CASTEiJ_T0044946.1 MGP_CASTEiJ_G0022296.1 mouse_genomes_project 16 92175490 92179853 + Son protein_coding processed_transcript MGP_CASTEiJ_T0044947.1 MGP_CASTEiJ_G0022296.1 mouse_genomes_project 16 92176315 92178797 + Son protein_coding retained_intron MGP_CASTEiJ_T0043746.1 MGP_CASTEiJ_G0021959.1 mouse_genomes_project 16 25049032 25068358 - MGP_CASTEiJ_P0043746 Uts2b protein_coding protein_coding MGP_CASTEiJ_T0043854.1 MGP_CASTEiJ_G0021984.1 mouse_genomes_project 16 29858173 29859605 - MGP_CASTEiJ_P0043854 0610012G03Rik protein_coding protein_coding MGP_CASTEiJ_T0043994.1 MGP_CASTEiJ_G0022017.1 mouse_genomes_project 16 31748650 31789752 + Heg1 protein_coding retained_intron MGP_CASTEiJ_T0043995.1 MGP_CASTEiJ_G0022017.1 mouse_genomes_project 16 31748650 31837868 + MGP_CASTEiJ_P0043995 Heg1 protein_coding protein_coding MGP_CASTEiJ_T0043996.1 MGP_CASTEiJ_G0022017.1 mouse_genomes_project 16 31748729 31835726 + MGP_CASTEiJ_P0043996 Heg1 protein_coding protein_coding MGP_CASTEiJ_T0043997.1 MGP_CASTEiJ_G0022017.1 mouse_genomes_project 16 31748762 31837849 + MGP_CASTEiJ_P0043997 Heg1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043998.1 MGP_CASTEiJ_G0022017.1 mouse_genomes_project 16 31798201 31806880 + Heg1 protein_coding processed_transcript MGP_CASTEiJ_T0043999.1 MGP_CASTEiJ_G0022017.1 mouse_genomes_project 16 31819785 31827456 + Heg1 protein_coding retained_intron MGP_CASTEiJ_T0044000.1 MGP_CASTEiJ_G0022017.1 mouse_genomes_project 16 31822171 31835126 + Heg1 protein_coding processed_transcript MGP_CASTEiJ_T0044001.1 MGP_CASTEiJ_G0022017.1 mouse_genomes_project 16 31823144 31827302 + Heg1 protein_coding retained_intron MGP_CASTEiJ_T0043154.1 MGP_CASTEiJ_G0021825.1 mouse_genomes_project 16 13975408 14035842 + MGP_CASTEiJ_P0043154 Mapk1 protein_coding protein_coding MGP_CASTEiJ_T0043155.1 MGP_CASTEiJ_G0021825.1 mouse_genomes_project 16 13975408 14038544 + MGP_CASTEiJ_P0043155 Mapk1 protein_coding protein_coding MGP_CASTEiJ_T0043156.1 MGP_CASTEiJ_G0021825.1 mouse_genomes_project 16 13975593 14030147 + MGP_CASTEiJ_P0043156 Mapk1 protein_coding protein_coding MGP_CASTEiJ_T0043157.1 MGP_CASTEiJ_G0021825.1 mouse_genomes_project 16 13975615 14030871 + MGP_CASTEiJ_P0043157 Mapk1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043158.1 MGP_CASTEiJ_G0021825.1 mouse_genomes_project 16 14009316 14015100 + Mapk1 protein_coding retained_intron MGP_CASTEiJ_T0043159.1 MGP_CASTEiJ_G0021825.1 mouse_genomes_project 16 14017074 14018244 + Mapk1 protein_coding retained_intron MGP_CASTEiJ_T0043160.1 MGP_CASTEiJ_G0021825.1 mouse_genomes_project 16 14017414 14034957 + MGP_CASTEiJ_P0043160 Mapk1 protein_coding protein_coding MGP_CASTEiJ_T0043161.1 MGP_CASTEiJ_G0021825.1 mouse_genomes_project 16 14026443 14029812 + Mapk1 protein_coding processed_transcript MGP_CASTEiJ_T0043162.1 MGP_CASTEiJ_G0021825.1 mouse_genomes_project 16 14026656 14035304 + Mapk1 protein_coding processed_transcript MGP_CASTEiJ_T0000053.1 MGP_CASTEiJ_G0000043.1 mouse_genomes_project 16 33044 33510 + MGP_CASTEiJ_P0000053 Gm17472 IG_LV_gene IG_LV_gene MGP_CASTEiJ_T0043713.1 MGP_CASTEiJ_G0021948.1 mouse_genomes_project 16 21540291 21569763 - MGP_CASTEiJ_P0043713 Bcl6 protein_coding protein_coding MGP_CASTEiJ_T0043714.1 MGP_CASTEiJ_G0021948.1 mouse_genomes_project 16 21544461 21549108 - Bcl6 protein_coding retained_intron MGP_CASTEiJ_T0003565.1 MGP_CASTEiJ_G0003233.1 mouse_genomes_project 16 44502045 44505028 + Gm15640 antisense antisense MGP_CASTEiJ_T0016742.1 MGP_CASTEiJ_G0014626.1 mouse_genomes_project 16 15504970 15513688 + processed_transcript antisense MGP_CASTEiJ_T0016743.1 MGP_CASTEiJ_G0014626.1 mouse_genomes_project 16 15505173 15513056 + processed_transcript retained_intron MGP_CASTEiJ_T0000044.1 MGP_CASTEiJ_G0000037.1 mouse_genomes_project 16 16380044 16380082 - MGP_CASTEiJ_P0000044 Iglj1 IG_J_gene IG_J_gene MGP_CASTEiJ_T0100727.1 MGP_CASTEiJ_G0037640.1 mouse_genomes_project 16 51804137 51804262 - Gm25723 snoRNA snoRNA MGP_CASTEiJ_T0099483.1 MGP_CASTEiJ_G0036396.1 mouse_genomes_project 16 15437891 15438039 + Gm26170 snRNA snRNA MGP_CASTEiJ_T0098527.1 MGP_CASTEiJ_G0035458.1 mouse_genomes_project 16 12969267 12969377 - n-R5s31 rRNA rRNA MGP_CASTEiJ_T0012810.1 MGP_CASTEiJ_G0010973.1 mouse_genomes_project 16 60218592 60218851 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016741.1 MGP_CASTEiJ_G0014625.1 mouse_genomes_project 16 15128573 15129723 + Gm15954 processed_transcript processed_transcript MGP_CASTEiJ_T0044239.1 MGP_CASTEiJ_G0022081.1 mouse_genomes_project 16 38326512 39372005 + MGP_CASTEiJ_P0044239 Lsamp protein_coding protein_coding MGP_CASTEiJ_T0044240.1 MGP_CASTEiJ_G0022081.1 mouse_genomes_project 16 38326522 40624322 + MGP_CASTEiJ_P0044240 Lsamp protein_coding protein_coding MGP_CASTEiJ_T0044241.1 MGP_CASTEiJ_G0022081.1 mouse_genomes_project 16 38326537 39818426 + MGP_CASTEiJ_P0044241 Lsamp protein_coding protein_coding MGP_CASTEiJ_T0044242.1 MGP_CASTEiJ_G0022081.1 mouse_genomes_project 16 38326537 39605059 + MGP_CASTEiJ_P0044242 Lsamp protein_coding protein_coding MGP_CASTEiJ_T0044243.1 MGP_CASTEiJ_G0022081.1 mouse_genomes_project 16 38326746 39042029 + Lsamp protein_coding processed_transcript MGP_CASTEiJ_T0044244.1 MGP_CASTEiJ_G0022081.1 mouse_genomes_project 16 39955569 40594451 + MGP_CASTEiJ_P0044244 Lsamp protein_coding protein_coding MGP_CASTEiJ_T0044245.1 MGP_CASTEiJ_G0022081.1 mouse_genomes_project 16 39955748 40629698 + MGP_CASTEiJ_P0044245 Lsamp protein_coding protein_coding MGP_CASTEiJ_T0044246.1 MGP_CASTEiJ_G0022081.1 mouse_genomes_project 16 39956130 39964260 + MGP_CASTEiJ_P0044246 Lsamp protein_coding protein_coding MGP_CASTEiJ_T0044247.1 MGP_CASTEiJ_G0022081.1 mouse_genomes_project 16 40559321 40622300 + MGP_CASTEiJ_P0044247 Lsamp protein_coding unknown_likely_coding MGP_CASTEiJ_T0044248.1 MGP_CASTEiJ_G0022081.1 mouse_genomes_project 16 40592221 40622485 + MGP_CASTEiJ_P0044248 Lsamp protein_coding protein_coding MGP_CASTEiJ_T0044249.1 MGP_CASTEiJ_G0022081.1 mouse_genomes_project 16 40592262 40622310 + MGP_CASTEiJ_P0044249 Lsamp protein_coding protein_coding MGP_CASTEiJ_T0012817.1 MGP_CASTEiJ_G0010980.1 mouse_genomes_project 16 75876136 75876888 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0043715.1 MGP_CASTEiJ_G0021949.1 mouse_genomes_project 16 22006239 22626521 + MGP_CASTEiJ_P0043715 Lpp protein_coding protein_coding MGP_CASTEiJ_T0043716.1 MGP_CASTEiJ_G0021949.1 mouse_genomes_project 16 22064038 22626521 + MGP_CASTEiJ_P0043716 Lpp protein_coding protein_coding MGP_CASTEiJ_T0043717.1 MGP_CASTEiJ_G0021949.1 mouse_genomes_project 16 22343775 22626521 + MGP_CASTEiJ_P0043717 Lpp protein_coding protein_coding MGP_CASTEiJ_T0044331.1 MGP_CASTEiJ_G0022096.1 mouse_genomes_project 16 43016987 43099120 - MGP_CASTEiJ_P0044331 Boc protein_coding protein_coding MGP_CASTEiJ_T0044332.1 MGP_CASTEiJ_G0022096.1 mouse_genomes_project 16 43016991 43099147 - MGP_CASTEiJ_P0044332 Boc protein_coding protein_coding MGP_CASTEiJ_T0044333.1 MGP_CASTEiJ_G0022096.1 mouse_genomes_project 16 43017400 43055891 - MGP_CASTEiJ_P0044333 Boc protein_coding unknown_likely_coding MGP_CASTEiJ_T0044334.1 MGP_CASTEiJ_G0022096.1 mouse_genomes_project 16 43017543 43099147 - MGP_CASTEiJ_P0044334 Boc protein_coding unknown_likely_coding MGP_CASTEiJ_T0044440.1 MGP_CASTEiJ_G0022126.1 mouse_genomes_project 16 47588911 47603436 - protein_coding retained_intron MGP_CASTEiJ_T0044441.1 MGP_CASTEiJ_G0022126.1 mouse_genomes_project 16 47588911 47656263 - MGP_CASTEiJ_P0044441 protein_coding protein_coding MGP_CASTEiJ_T0044442.1 MGP_CASTEiJ_G0022126.1 mouse_genomes_project 16 47588913 47603344 - protein_coding retained_intron MGP_CASTEiJ_T0044443.1 MGP_CASTEiJ_G0022126.1 mouse_genomes_project 16 47590557 47656039 - MGP_CASTEiJ_P0044443 protein_coding protein_coding MGP_CASTEiJ_T0044444.1 MGP_CASTEiJ_G0022126.1 mouse_genomes_project 16 47591544 47594471 - MGP_CASTEiJ_P0044444 protein_coding protein_coding MGP_CASTEiJ_T0044445.1 MGP_CASTEiJ_G0022126.1 mouse_genomes_project 16 47591763 47596019 - protein_coding retained_intron MGP_CASTEiJ_T0044446.1 MGP_CASTEiJ_G0022126.1 mouse_genomes_project 16 47611209 47620325 - protein_coding retained_intron MGP_CASTEiJ_T0000043.1 MGP_CASTEiJ_G0000036.1 mouse_genomes_project 16 16374101 16374139 - MGP_CASTEiJ_P0000043 Iglj2 IG_J_gene IG_J_gene MGP_CASTEiJ_T0044811.1 MGP_CASTEiJ_G0022251.1 mouse_genomes_project 16 89140398 89140924 - MGP_CASTEiJ_P0044811 Krtap19-3 protein_coding protein_coding MGP_CASTEiJ_T0012767.1 MGP_CASTEiJ_G0010930.1 mouse_genomes_project 16 16902225 16902659 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003579.1 MGP_CASTEiJ_G0003243.1 mouse_genomes_project 16 96995531 97001873 + 1700093J21Rik antisense antisense MGP_CASTEiJ_T0043323.1 MGP_CASTEiJ_G0021855.1 mouse_genomes_project 16 14957106 14958493 + MGP_CASTEiJ_P0043323 Tssk2 protein_coding protein_coding MGP_CASTEiJ_T0043463.1 MGP_CASTEiJ_G0021891.1 mouse_genomes_project 16 16807031 16886326 - MGP_CASTEiJ_P0043463 protein_coding protein_coding MGP_CASTEiJ_T0044799.1 MGP_CASTEiJ_G0022241.1 mouse_genomes_project 16 88903007 88903980 - MGP_CASTEiJ_P0044799 Krtap26-1 protein_coding protein_coding MGP_CASTEiJ_T0044172.1 MGP_CASTEiJ_G0022060.1 mouse_genomes_project 16 36024114 36086318 + MGP_CASTEiJ_P0044172 Fstl1 protein_coding protein_coding MGP_CASTEiJ_T0044173.1 MGP_CASTEiJ_G0022060.1 mouse_genomes_project 16 36024316 36044457 + Fstl1 protein_coding processed_transcript MGP_CASTEiJ_T0044174.1 MGP_CASTEiJ_G0022060.1 mouse_genomes_project 16 36024351 36102963 + MGP_CASTEiJ_P0044174 Fstl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044175.1 MGP_CASTEiJ_G0022060.1 mouse_genomes_project 16 36024393 36065990 + Fstl1 protein_coding retained_intron MGP_CASTEiJ_T0044176.1 MGP_CASTEiJ_G0022060.1 mouse_genomes_project 16 36062739 36084171 + Fstl1 protein_coding processed_transcript MGP_CASTEiJ_T0044177.1 MGP_CASTEiJ_G0022060.1 mouse_genomes_project 16 36069719 36085368 + Fstl1 protein_coding processed_transcript MGP_CASTEiJ_T0012821.1 MGP_CASTEiJ_G0010984.1 mouse_genomes_project 16 87704735 87705125 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102104.1 MGP_CASTEiJ_G0038829.1 mouse_genomes_project 16 57995198 57996268 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0043650.1 MGP_CASTEiJ_G0021930.1 mouse_genomes_project 16 19896236 20101373 - MGP_CASTEiJ_P0043650 Dgkg protein_coding protein_coding MGP_CASTEiJ_T0043651.1 MGP_CASTEiJ_G0021930.1 mouse_genomes_project 16 19896992 20101421 - MGP_CASTEiJ_P0043651 Dgkg protein_coding protein_coding MGP_CASTEiJ_T0043652.1 MGP_CASTEiJ_G0021930.1 mouse_genomes_project 16 19985715 20101388 - MGP_CASTEiJ_P0043652 Dgkg protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043653.1 MGP_CASTEiJ_G0021930.1 mouse_genomes_project 16 20034468 20101228 - Dgkg protein_coding processed_transcript MGP_CASTEiJ_T0012820.1 MGP_CASTEiJ_G0010983.1 mouse_genomes_project 16 81886040 81887085 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044611.1 MGP_CASTEiJ_G0022178.1 mouse_genomes_project 16 58167789 58168784 + MGP_CASTEiJ_P0044611 Olfr195 protein_coding protein_coding MGP_CASTEiJ_T0042943.1 MGP_CASTEiJ_G0021777.1 mouse_genomes_project 16 7671638 7679639 + MGP_CASTEiJ_P0042943 Rmi2 protein_coding protein_coding MGP_CASTEiJ_T0042944.1 MGP_CASTEiJ_G0021777.1 mouse_genomes_project 16 7671647 7732644 + MGP_CASTEiJ_P0042944 Rmi2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0099478.1 MGP_CASTEiJ_G0036391.1 mouse_genomes_project 16 8032428 8032591 - Gm24145 snRNA snRNA MGP_CASTEiJ_T0012787.1 MGP_CASTEiJ_G0010950.1 mouse_genomes_project 16 33732530 33732778 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0042833.1 MGP_CASTEiJ_G0021744.1 mouse_genomes_project 16 1646480 1695624 - MGP_CASTEiJ_P0042833 Ppl protein_coding protein_coding MGP_CASTEiJ_T0042834.1 MGP_CASTEiJ_G0021744.1 mouse_genomes_project 16 1647208 1695515 - MGP_CASTEiJ_P0042834 Ppl protein_coding unknown_likely_coding MGP_CASTEiJ_T0100742.1 MGP_CASTEiJ_G0037655.1 mouse_genomes_project 16 78055849 78055980 + Gm25916 snoRNA snoRNA MGP_CASTEiJ_T0003554.1 MGP_CASTEiJ_G0003224.1 mouse_genomes_project 16 33061992 33066208 - 1700119H24Rik antisense antisense MGP_CASTEiJ_T0044902.1 MGP_CASTEiJ_G0022286.1 mouse_genomes_project 16 91690676 91693815 + MGP_CASTEiJ_P0044902 Olig2 protein_coding protein_coding MGP_CASTEiJ_T0044545.1 MGP_CASTEiJ_G0022151.1 mouse_genomes_project 16 56135253 56171002 + MGP_CASTEiJ_P0044545 Tomm70a protein_coding protein_coding MGP_CASTEiJ_T0044546.1 MGP_CASTEiJ_G0022151.1 mouse_genomes_project 16 56135401 56173190 + MGP_CASTEiJ_P0044546 Tomm70a protein_coding unknown_likely_coding MGP_CASTEiJ_T0012757.1 MGP_CASTEiJ_G0010920.1 mouse_genomes_project 16 13495570 13495990 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009851.1 MGP_CASTEiJ_G0008039.1 mouse_genomes_project 16 15360284 15360363 - Mir1306 miRNA miRNA MGP_CASTEiJ_T0045005.1 MGP_CASTEiJ_G0022303.1 mouse_genomes_project 16 92844395 92850096 + MGP_CASTEiJ_P0045005 Kcne2 protein_coding protein_coding MGP_CASTEiJ_T0045006.1 MGP_CASTEiJ_G0022303.1 mouse_genomes_project 16 92847613 92850096 + MGP_CASTEiJ_P0045006 Kcne2 protein_coding protein_coding MGP_CASTEiJ_T0042920.1 MGP_CASTEiJ_G0021768.1 mouse_genomes_project 16 7299359 7350705 + MGP_CASTEiJ_P0042920 Ciita protein_coding unknown_likely_coding MGP_CASTEiJ_T0042921.1 MGP_CASTEiJ_G0021768.1 mouse_genomes_project 16 7305992 7349839 + MGP_CASTEiJ_P0042921 Ciita protein_coding protein_coding MGP_CASTEiJ_T0006684.1 MGP_CASTEiJ_G0005526.1 mouse_genomes_project 16 49550026 49550700 + 1700116B05Rik lincRNA lincRNA MGP_CASTEiJ_T0006685.1 MGP_CASTEiJ_G0005526.1 mouse_genomes_project 16 49550095 49550674 + 1700116B05Rik lincRNA lincRNA MGP_CASTEiJ_T0099503.1 MGP_CASTEiJ_G0036416.1 mouse_genomes_project 16 49695797 49695904 - Gm24925 snRNA snRNA MGP_CASTEiJ_T0006665.1 MGP_CASTEiJ_G0005511.1 mouse_genomes_project 16 27676867 27718680 - Gm26569 lincRNA lincRNA MGP_CASTEiJ_T0044903.1 MGP_CASTEiJ_G0022287.1 mouse_genomes_project 16 91729706 91731869 + MGP_CASTEiJ_P0044903 Olig1 protein_coding protein_coding MGP_CASTEiJ_T0006680.1 MGP_CASTEiJ_G0005525.1 mouse_genomes_project 16 49482658 49495565 - Dubr lincRNA lincRNA MGP_CASTEiJ_T0006681.1 MGP_CASTEiJ_G0005525.1 mouse_genomes_project 16 49482663 49495471 - Dubr lincRNA lincRNA MGP_CASTEiJ_T0006682.1 MGP_CASTEiJ_G0005525.1 mouse_genomes_project 16 49489535 49495525 - Dubr lincRNA lincRNA MGP_CASTEiJ_T0006683.1 MGP_CASTEiJ_G0005525.1 mouse_genomes_project 16 49490226 49495476 - Dubr lincRNA lincRNA MGP_CASTEiJ_T0043745.1 MGP_CASTEiJ_G0021958.1 mouse_genomes_project 16 24998546 25043809 + MGP_CASTEiJ_P0043745 Ostn protein_coding protein_coding MGP_CASTEiJ_T0100720.1 MGP_CASTEiJ_G0037633.1 mouse_genomes_project 16 36432340 36432451 + Gm25053 snoRNA snoRNA MGP_CASTEiJ_T0009894.1 MGP_CASTEiJ_G0008082.1 mouse_genomes_project 16 94017082 94017179 + Mir802 miRNA miRNA MGP_CASTEiJ_T0099496.1 MGP_CASTEiJ_G0036409.1 mouse_genomes_project 16 34614281 34614384 + Gm25903 snRNA snRNA MGP_CASTEiJ_T0099487.1 MGP_CASTEiJ_G0036400.1 mouse_genomes_project 16 20521912 20522018 + Gm23715 snRNA snRNA MGP_CASTEiJ_T0098534.1 MGP_CASTEiJ_G0035465.1 mouse_genomes_project 16 84927591 84927689 + Gm25908 rRNA rRNA MGP_CASTEiJ_T0012753.1 MGP_CASTEiJ_G0010916.1 mouse_genomes_project 16 12210672 12211129 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006705.1 MGP_CASTEiJ_G0005539.1 mouse_genomes_project 16 94535133 94540828 - lincRNA lincRNA MGP_CASTEiJ_T0044759.1 MGP_CASTEiJ_G0022228.1 mouse_genomes_project 16 85991620 86042350 - MGP_CASTEiJ_P0044759 Adamts5 protein_coding protein_coding MGP_CASTEiJ_T0044402.1 MGP_CASTEiJ_G0022113.1 mouse_genomes_project 16 44281438 44295645 - MGP_CASTEiJ_P0044402 Abhd10 protein_coding protein_coding MGP_CASTEiJ_T0044403.1 MGP_CASTEiJ_G0022113.1 mouse_genomes_project 16 44283264 44295592 - MGP_CASTEiJ_P0044403 Abhd10 protein_coding protein_coding MGP_CASTEiJ_T0044404.1 MGP_CASTEiJ_G0022113.1 mouse_genomes_project 16 44289663 44295575 - Abhd10 protein_coding processed_transcript MGP_CASTEiJ_T0044405.1 MGP_CASTEiJ_G0022113.1 mouse_genomes_project 16 44293035 44295597 - Abhd10 protein_coding processed_transcript MGP_CASTEiJ_T0044406.1 MGP_CASTEiJ_G0022113.1 mouse_genomes_project 16 44293542 44295590 - Abhd10 protein_coding processed_transcript MGP_CASTEiJ_T0043268.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14655080 14681636 + MGP_CASTEiJ_P0043268 Smpd4 protein_coding protein_coding MGP_CASTEiJ_T0043269.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14655083 14675915 + Smpd4 protein_coding processed_transcript MGP_CASTEiJ_T0043270.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14655083 14663043 + MGP_CASTEiJ_P0043270 Smpd4 protein_coding protein_coding MGP_CASTEiJ_T0043271.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14655083 14681635 + MGP_CASTEiJ_P0043271 Smpd4 protein_coding protein_coding MGP_CASTEiJ_T0043272.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14655086 14680124 + MGP_CASTEiJ_P0043272 Smpd4 protein_coding protein_coding MGP_CASTEiJ_T0043273.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14655086 14663245 + MGP_CASTEiJ_P0043273 Smpd4 protein_coding protein_coding MGP_CASTEiJ_T0043274.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14655089 14681635 + Smpd4 protein_coding retained_intron MGP_CASTEiJ_T0043275.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14655089 14658614 + Smpd4 protein_coding retained_intron MGP_CASTEiJ_T0043276.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14655089 14660912 + Smpd4 protein_coding retained_intron MGP_CASTEiJ_T0043277.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14655089 14681635 + MGP_CASTEiJ_P0043277 Smpd4 protein_coding protein_coding MGP_CASTEiJ_T0043278.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14655089 14662437 + MGP_CASTEiJ_P0043278 Smpd4 protein_coding protein_coding MGP_CASTEiJ_T0043279.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14655100 14675165 + MGP_CASTEiJ_P0043279 Smpd4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043280.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14655103 14663282 + MGP_CASTEiJ_P0043280 Smpd4 protein_coding protein_coding MGP_CASTEiJ_T0043281.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14655107 14678925 + Smpd4 protein_coding retained_intron MGP_CASTEiJ_T0043282.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14655115 14662601 + MGP_CASTEiJ_P0043282 Smpd4 protein_coding protein_coding MGP_CASTEiJ_T0043283.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14655243 14660573 + MGP_CASTEiJ_P0043283 Smpd4 protein_coding protein_coding MGP_CASTEiJ_T0043284.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14657210 14679580 + MGP_CASTEiJ_P0043284 Smpd4 protein_coding protein_coding MGP_CASTEiJ_T0043285.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14657210 14679580 + MGP_CASTEiJ_P0043285 Smpd4 protein_coding protein_coding MGP_CASTEiJ_T0043286.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14657210 14679580 + MGP_CASTEiJ_P0043286 Smpd4 protein_coding protein_coding MGP_CASTEiJ_T0043287.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14657210 14679580 + MGP_CASTEiJ_P0043287 Smpd4 protein_coding protein_coding MGP_CASTEiJ_T0043288.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14657210 14679580 + MGP_CASTEiJ_P0043288 Smpd4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043289.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14674961 14677840 + Smpd4 protein_coding retained_intron MGP_CASTEiJ_T0043290.1 MGP_CASTEiJ_G0021846.1 mouse_genomes_project 16 14675226 14677744 + Smpd4 protein_coding retained_intron MGP_CASTEiJ_T0102105.1 MGP_CASTEiJ_G0038830.1 mouse_genomes_project 16 58010268 58012159 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0043182.1 MGP_CASTEiJ_G0021828.1 mouse_genomes_project 16 14113333 14125113 - MGP_CASTEiJ_P0043182 2610318N02Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0000917.1 MGP_CASTEiJ_G0000855.1 mouse_genomes_project 16 38481958 38482001 + TEC TEC MGP_CASTEiJ_T0044252.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 41354768 41957236 + Zbtb20 protein_coding retained_intron MGP_CASTEiJ_T0044253.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 41388629 41560038 + Zbtb20 protein_coding processed_transcript MGP_CASTEiJ_T0044254.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 41388779 42066835 + Zbtb20 protein_coding processed_transcript MGP_CASTEiJ_T0044255.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 41388882 42074626 + MGP_CASTEiJ_P0044255 Zbtb20 protein_coding protein_coding MGP_CASTEiJ_T0044256.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 41388889 41957135 + Zbtb20 protein_coding retained_intron MGP_CASTEiJ_T0044257.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 41720917 42106365 + MGP_CASTEiJ_P0044257 Zbtb20 protein_coding protein_coding MGP_CASTEiJ_T0044258.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 41721076 41792046 + Zbtb20 protein_coding retained_intron MGP_CASTEiJ_T0044259.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 41856788 42066815 + Zbtb20 protein_coding processed_transcript MGP_CASTEiJ_T0044260.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 41857204 42075651 + Zbtb20 protein_coding retained_intron MGP_CASTEiJ_T0044261.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 41857596 42106312 + MGP_CASTEiJ_P0044261 Zbtb20 protein_coding protein_coding MGP_CASTEiJ_T0044262.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 41857927 42106319 + MGP_CASTEiJ_P0044262 Zbtb20 protein_coding protein_coding MGP_CASTEiJ_T0044263.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 41999701 42074094 + MGP_CASTEiJ_P0044263 Zbtb20 protein_coding protein_coding MGP_CASTEiJ_T0044264.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 41999709 42068800 + MGP_CASTEiJ_P0044264 Zbtb20 protein_coding protein_coding MGP_CASTEiJ_T0044265.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 41999729 42106554 + MGP_CASTEiJ_P0044265 Zbtb20 protein_coding protein_coding MGP_CASTEiJ_T0044266.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 41999784 42074075 + Zbtb20 protein_coding processed_transcript MGP_CASTEiJ_T0044267.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 42005011 42066835 + Zbtb20 protein_coding processed_transcript MGP_CASTEiJ_T0044268.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 42066591 42120792 + MGP_CASTEiJ_P0044268 Zbtb20 protein_coding protein_coding MGP_CASTEiJ_T0044269.1 MGP_CASTEiJ_G0022083.1 mouse_genomes_project 16 42101021 42115632 + MGP_CASTEiJ_P0044269 Zbtb20 protein_coding unknown_likely_coding MGP_CASTEiJ_T0042977.1 MGP_CASTEiJ_G0021782.1 mouse_genomes_project 16 8059547 8069943 - MGP_CASTEiJ_P0042977 Rsl1d1 protein_coding protein_coding MGP_CASTEiJ_T0042978.1 MGP_CASTEiJ_G0021782.1 mouse_genomes_project 16 8060079 8061570 - Rsl1d1 protein_coding retained_intron MGP_CASTEiJ_T0042979.1 MGP_CASTEiJ_G0021782.1 mouse_genomes_project 16 8063019 8069876 - Rsl1d1 protein_coding retained_intron MGP_CASTEiJ_T0016747.1 MGP_CASTEiJ_G0014630.1 mouse_genomes_project 16 24393207 24438724 - Gm20319 processed_transcript processed_transcript MGP_CASTEiJ_T0016748.1 MGP_CASTEiJ_G0014630.1 mouse_genomes_project 16 24393505 24438735 - Gm20319 processed_transcript processed_transcript MGP_CASTEiJ_T0016749.1 MGP_CASTEiJ_G0014630.1 mouse_genomes_project 16 24408669 24438735 - Gm20319 processed_transcript processed_transcript MGP_CASTEiJ_T0000926.1 MGP_CASTEiJ_G0000863.1 mouse_genomes_project 16 77194070 77195344 + TEC TEC MGP_CASTEiJ_T0043481.1 MGP_CASTEiJ_G0021899.1 mouse_genomes_project 16 17482063 17490147 - MGP_CASTEiJ_P0043481 Map6d1 protein_coding protein_coding MGP_CASTEiJ_T0042893.1 MGP_CASTEiJ_G0021760.1 mouse_genomes_project 16 5548154 5585029 + MGP_CASTEiJ_P0042893 1810013L24Rik protein_coding protein_coding MGP_CASTEiJ_T0009837.1 MGP_CASTEiJ_G0008025.1 mouse_genomes_project 16 5311226 5311351 - Gm24462 miRNA miRNA MGP_CASTEiJ_T0003571.1 MGP_CASTEiJ_G0003237.1 mouse_genomes_project 16 59697589 59703869 + Gm9017 antisense antisense MGP_CASTEiJ_T0003572.1 MGP_CASTEiJ_G0003237.1 mouse_genomes_project 16 59698578 59704148 + Gm9017 antisense antisense MGP_CASTEiJ_T0043066.1 MGP_CASTEiJ_G0021803.1 mouse_genomes_project 16 11192786 11301826 - MGP_CASTEiJ_P0043066 Myh11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043067.1 MGP_CASTEiJ_G0021803.1 mouse_genomes_project 16 11192787 11301869 - MGP_CASTEiJ_P0043067 Myh11 protein_coding protein_coding MGP_CASTEiJ_T0042878.1 MGP_CASTEiJ_G0021758.1 mouse_genomes_project 16 5372320 5375500 + MGP_CASTEiJ_P0042878 Gm43786 protein_coding protein_coding MGP_CASTEiJ_T0042879.1 MGP_CASTEiJ_G0021758.1 mouse_genomes_project 16 5374384 5375506 + Gm43786 protein_coding processed_transcript MGP_CASTEiJ_T0044748.1 MGP_CASTEiJ_G0022224.1 mouse_genomes_project 16 84945608 84975200 + MGP_CASTEiJ_P0044748 Gabpa protein_coding protein_coding MGP_CASTEiJ_T0044749.1 MGP_CASTEiJ_G0022224.1 mouse_genomes_project 16 84945807 84977679 + MGP_CASTEiJ_P0044749 Gabpa protein_coding protein_coding MGP_CASTEiJ_T0044750.1 MGP_CASTEiJ_G0022224.1 mouse_genomes_project 16 84963690 84974314 + Gabpa protein_coding processed_transcript MGP_CASTEiJ_T0044751.1 MGP_CASTEiJ_G0022224.1 mouse_genomes_project 16 84969944 84971483 + Gabpa protein_coding retained_intron MGP_CASTEiJ_T0044752.1 MGP_CASTEiJ_G0022224.1 mouse_genomes_project 16 84973928 84976349 + Gabpa protein_coding processed_transcript MGP_CASTEiJ_T0044182.1 MGP_CASTEiJ_G0022064.1 mouse_genomes_project 16 36356602 36521980 + MGP_CASTEiJ_P0044182 Gsk3b protein_coding protein_coding MGP_CASTEiJ_T0044183.1 MGP_CASTEiJ_G0022064.1 mouse_genomes_project 16 36357889 36516664 + MGP_CASTEiJ_P0044183 Gsk3b protein_coding protein_coding MGP_CASTEiJ_T0044184.1 MGP_CASTEiJ_G0022064.1 mouse_genomes_project 16 36416638 36467788 + Gsk3b protein_coding processed_transcript MGP_CASTEiJ_T0044185.1 MGP_CASTEiJ_G0022064.1 mouse_genomes_project 16 36417600 36485713 + Gsk3b protein_coding retained_intron MGP_CASTEiJ_T0098533.1 MGP_CASTEiJ_G0035464.1 mouse_genomes_project 16 60468615 60468733 - n-R5s37 rRNA rRNA MGP_CASTEiJ_T0042871.1 MGP_CASTEiJ_G0021756.1 mouse_genomes_project 16 5325554 5346620 + MGP_CASTEiJ_P0042871 Pmm2 protein_coding protein_coding MGP_CASTEiJ_T0042872.1 MGP_CASTEiJ_G0021756.1 mouse_genomes_project 16 5325603 5336951 + Pmm2 protein_coding retained_intron MGP_CASTEiJ_T0042873.1 MGP_CASTEiJ_G0021756.1 mouse_genomes_project 16 5325611 5332889 + Pmm2 protein_coding retained_intron MGP_CASTEiJ_T0042874.1 MGP_CASTEiJ_G0021756.1 mouse_genomes_project 16 5325910 5339269 + Pmm2 protein_coding processed_transcript MGP_CASTEiJ_T0042875.1 MGP_CASTEiJ_G0021756.1 mouse_genomes_project 16 5333843 5336550 + Pmm2 protein_coding retained_intron MGP_CASTEiJ_T0042876.1 MGP_CASTEiJ_G0021756.1 mouse_genomes_project 16 5336431 5345833 + Pmm2 protein_coding retained_intron MGP_CASTEiJ_T0100713.1 MGP_CASTEiJ_G0037626.1 mouse_genomes_project 16 22514944 22515076 + Gm22672 snoRNA snoRNA MGP_CASTEiJ_T0012761.1 MGP_CASTEiJ_G0010924.1 mouse_genomes_project 16 14762995 14763433 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100717.1 MGP_CASTEiJ_G0037630.1 mouse_genomes_project 16 30170561 30170705 - Gm25848 snoRNA snoRNA MGP_CASTEiJ_T0044817.1 MGP_CASTEiJ_G0022257.1 mouse_genomes_project 16 89284896 89285276 - MGP_CASTEiJ_P0044817 Krtap22-2 protein_coding protein_coding MGP_CASTEiJ_T0043464.1 MGP_CASTEiJ_G0021892.1 mouse_genomes_project 16 16807048 16807987 - MGP_CASTEiJ_P0043464 protein_coding protein_coding MGP_CASTEiJ_T0045168.1 MGP_CASTEiJ_G0022334.1 mouse_genomes_project 16 97135083 97136969 + MGP_CASTEiJ_P0045168 protein_coding protein_coding MGP_CASTEiJ_T0099488.1 MGP_CASTEiJ_G0036401.1 mouse_genomes_project 16 20963219 20963290 + Gm23066 snRNA snRNA MGP_CASTEiJ_T0044037.1 MGP_CASTEiJ_G0022025.1 mouse_genomes_project 16 33153046 33243972 + MGP_CASTEiJ_P0044037 Hacd2 protein_coding protein_coding MGP_CASTEiJ_T0044675.1 MGP_CASTEiJ_G0022204.1 mouse_genomes_project 16 69853967 70092426 + MGP_CASTEiJ_P0044675 Gbe1 protein_coding protein_coding MGP_CASTEiJ_T0044676.1 MGP_CASTEiJ_G0022204.1 mouse_genomes_project 16 69854081 69906466 + Gbe1 protein_coding retained_intron MGP_CASTEiJ_T0044677.1 MGP_CASTEiJ_G0022204.1 mouse_genomes_project 16 69854081 70175281 + MGP_CASTEiJ_P0044677 Gbe1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044678.1 MGP_CASTEiJ_G0022204.1 mouse_genomes_project 16 69854082 70065979 + Gbe1 protein_coding retained_intron MGP_CASTEiJ_T0044679.1 MGP_CASTEiJ_G0022204.1 mouse_genomes_project 16 69854082 70065546 + MGP_CASTEiJ_P0044679 Gbe1 protein_coding protein_coding MGP_CASTEiJ_T0044680.1 MGP_CASTEiJ_G0022204.1 mouse_genomes_project 16 69854105 70092426 + MGP_CASTEiJ_P0044680 Gbe1 protein_coding protein_coding MGP_CASTEiJ_T0044681.1 MGP_CASTEiJ_G0022204.1 mouse_genomes_project 16 69854152 70092424 + MGP_CASTEiJ_P0044681 Gbe1 protein_coding protein_coding MGP_CASTEiJ_T0044682.1 MGP_CASTEiJ_G0022204.1 mouse_genomes_project 16 70083247 70092207 + Gbe1 protein_coding retained_intron MGP_CASTEiJ_T0099482.1 MGP_CASTEiJ_G0036395.1 mouse_genomes_project 16 14506198 14506265 - Gm22770 snRNA snRNA MGP_CASTEiJ_T0012792.1 MGP_CASTEiJ_G0010955.1 mouse_genomes_project 16 36804794 36806526 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012795.1 MGP_CASTEiJ_G0010958.1 mouse_genomes_project 16 37120656 37121050 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0043720.1 MGP_CASTEiJ_G0021951.1 mouse_genomes_project 16 23351410 23491433 + MGP_CASTEiJ_P0043720 Trp63 protein_coding protein_coding MGP_CASTEiJ_T0043721.1 MGP_CASTEiJ_G0021951.1 mouse_genomes_project 16 23351412 23567152 + MGP_CASTEiJ_P0043721 Trp63 protein_coding protein_coding MGP_CASTEiJ_T0043722.1 MGP_CASTEiJ_G0021951.1 mouse_genomes_project 16 23351412 23552206 + MGP_CASTEiJ_P0043722 Trp63 protein_coding protein_coding MGP_CASTEiJ_T0043723.1 MGP_CASTEiJ_G0021951.1 mouse_genomes_project 16 23432877 23564677 + MGP_CASTEiJ_P0043723 Trp63 protein_coding protein_coding MGP_CASTEiJ_T0043724.1 MGP_CASTEiJ_G0021951.1 mouse_genomes_project 16 23472124 23552206 + MGP_CASTEiJ_P0043724 Trp63 protein_coding protein_coding MGP_CASTEiJ_T0043725.1 MGP_CASTEiJ_G0021951.1 mouse_genomes_project 16 23472124 23567152 + MGP_CASTEiJ_P0043725 Trp63 protein_coding protein_coding MGP_CASTEiJ_T0043726.1 MGP_CASTEiJ_G0021951.1 mouse_genomes_project 16 23472124 23542875 + MGP_CASTEiJ_P0043726 Trp63 protein_coding protein_coding MGP_CASTEiJ_T0043727.1 MGP_CASTEiJ_G0021951.1 mouse_genomes_project 16 23472124 23567152 + MGP_CASTEiJ_P0043727 Trp63 protein_coding protein_coding MGP_CASTEiJ_T0044901.1 MGP_CASTEiJ_G0022285.1 mouse_genomes_project 16 91629221 91632443 - MGP_CASTEiJ_P0044901 Gm9881 protein_coding protein_coding MGP_CASTEiJ_T0009849.1 MGP_CASTEiJ_G0008037.1 mouse_genomes_project 16 14124367 14124464 - Mir301b miRNA miRNA MGP_CASTEiJ_T0042671.1 MGP_CASTEiJ_G0021707.1 mouse_genomes_project 16 45738 46680 + MGP_CASTEiJ_P0042671 Olfr161 protein_coding protein_coding MGP_CASTEiJ_T0000920.1 MGP_CASTEiJ_G0000858.1 mouse_genomes_project 16 56930317 56930727 + TEC TEC MGP_CASTEiJ_T0043758.1 MGP_CASTEiJ_G0021964.1 mouse_genomes_project 16 26982485 27132144 - MGP_CASTEiJ_P0043758 Atp13a5 protein_coding protein_coding MGP_CASTEiJ_T0043759.1 MGP_CASTEiJ_G0021964.1 mouse_genomes_project 16 26982548 27132118 - MGP_CASTEiJ_P0043759 Atp13a5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043760.1 MGP_CASTEiJ_G0021964.1 mouse_genomes_project 16 26983094 27132079 - MGP_CASTEiJ_P0043760 Atp13a5 protein_coding protein_coding MGP_CASTEiJ_T0043761.1 MGP_CASTEiJ_G0021964.1 mouse_genomes_project 16 27079756 27131995 - MGP_CASTEiJ_P0043761 Atp13a5 protein_coding protein_coding MGP_CASTEiJ_T0012806.1 MGP_CASTEiJ_G0010969.1 mouse_genomes_project 16 55771341 55771982 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044874.1 MGP_CASTEiJ_G0022281.1 mouse_genomes_project 16 91369240 91378257 - MGP_CASTEiJ_P0044874 1110004E09Rik protein_coding protein_coding MGP_CASTEiJ_T0044875.1 MGP_CASTEiJ_G0022281.1 mouse_genomes_project 16 91369384 91373386 - MGP_CASTEiJ_P0044875 1110004E09Rik protein_coding protein_coding MGP_CASTEiJ_T0044876.1 MGP_CASTEiJ_G0022281.1 mouse_genomes_project 16 91369401 91378357 - MGP_CASTEiJ_P0044876 1110004E09Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044877.1 MGP_CASTEiJ_G0022281.1 mouse_genomes_project 16 91370519 91378153 - MGP_CASTEiJ_P0044877 1110004E09Rik protein_coding protein_coding MGP_CASTEiJ_T0044878.1 MGP_CASTEiJ_G0022281.1 mouse_genomes_project 16 91370582 91377936 - MGP_CASTEiJ_P0044878 1110004E09Rik protein_coding protein_coding MGP_CASTEiJ_T0044879.1 MGP_CASTEiJ_G0022281.1 mouse_genomes_project 16 91370780 91378256 - 1110004E09Rik protein_coding processed_transcript MGP_CASTEiJ_T0009872.1 MGP_CASTEiJ_G0008060.1 mouse_genomes_project 16 42297414 42297513 + Gm25996 miRNA miRNA MGP_CASTEiJ_T0043313.1 MGP_CASTEiJ_G0021852.1 mouse_genomes_project 16 14894832 14950140 - MGP_CASTEiJ_P0043313 Gm20518 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044826.1 MGP_CASTEiJ_G0022265.1 mouse_genomes_project 16 89460642 89461039 + MGP_CASTEiJ_P0044826 Gm9789 protein_coding protein_coding MGP_CASTEiJ_T0003550.1 MGP_CASTEiJ_G0003222.1 mouse_genomes_project 16 31854195 31863877 - Gm15657 antisense antisense MGP_CASTEiJ_T0003551.1 MGP_CASTEiJ_G0003222.1 mouse_genomes_project 16 31862174 31863875 - Gm15657 antisense antisense MGP_CASTEiJ_T0003552.1 MGP_CASTEiJ_G0003222.1 mouse_genomes_project 16 31862505 31864655 - Gm15657 antisense antisense MGP_CASTEiJ_T0102106.1 MGP_CASTEiJ_G0038831.1 mouse_genomes_project 16 58039742 58040669 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0044434.1 MGP_CASTEiJ_G0022120.1 mouse_genomes_project 16 46922647 46932104 + MGP_CASTEiJ_P0044434 Dppa2 protein_coding protein_coding MGP_CASTEiJ_T0009866.1 MGP_CASTEiJ_G0008054.1 mouse_genomes_project 16 31099910 31099995 + Mir1947 miRNA miRNA MGP_CASTEiJ_T0012809.1 MGP_CASTEiJ_G0010972.1 mouse_genomes_project 16 59722426 59723373 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044957.1 MGP_CASTEiJ_G0022298.1 mouse_genomes_project 16 92185544 92445659 - MGP_CASTEiJ_P0044957 Atp5o protein_coding protein_coding MGP_CASTEiJ_T0044995.1 MGP_CASTEiJ_G0022298.1 mouse_genomes_project 16 92443906 92450369 - MGP_CASTEiJ_P0044995 Atp5o protein_coding protein_coding MGP_CASTEiJ_T0044996.1 MGP_CASTEiJ_G0022298.1 mouse_genomes_project 16 92443911 92445375 - Atp5o protein_coding retained_intron MGP_CASTEiJ_T0044997.1 MGP_CASTEiJ_G0022298.1 mouse_genomes_project 16 92443913 92450229 - MGP_CASTEiJ_P0044997 Atp5o protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044998.1 MGP_CASTEiJ_G0022298.1 mouse_genomes_project 16 92444005 92449957 - Atp5o protein_coding processed_transcript MGP_CASTEiJ_T0044999.1 MGP_CASTEiJ_G0022298.1 mouse_genomes_project 16 92445535 92450101 - Atp5o protein_coding processed_transcript MGP_CASTEiJ_T0045000.1 MGP_CASTEiJ_G0022298.1 mouse_genomes_project 16 92446820 92450234 - Atp5o protein_coding retained_intron MGP_CASTEiJ_T0044435.1 MGP_CASTEiJ_G0022121.1 mouse_genomes_project 16 47068464 47261515 + MGP_CASTEiJ_P0044435 Morc1 protein_coding protein_coding MGP_CASTEiJ_T0042714.1 MGP_CASTEiJ_G0021718.1 mouse_genomes_project 16 435778 445791 - MGP_CASTEiJ_P0042714 Slx4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042715.1 MGP_CASTEiJ_G0021718.1 mouse_genomes_project 16 435796 458599 - MGP_CASTEiJ_P0042715 Slx4 protein_coding protein_coding MGP_CASTEiJ_T0042716.1 MGP_CASTEiJ_G0021718.1 mouse_genomes_project 16 435797 452626 - MGP_CASTEiJ_P0042716 Slx4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042717.1 MGP_CASTEiJ_G0021718.1 mouse_genomes_project 16 435801 442191 - Slx4 protein_coding retained_intron MGP_CASTEiJ_T0042718.1 MGP_CASTEiJ_G0021718.1 mouse_genomes_project 16 435806 438878 - Slx4 protein_coding retained_intron MGP_CASTEiJ_T0042719.1 MGP_CASTEiJ_G0021718.1 mouse_genomes_project 16 451675 458171 - MGP_CASTEiJ_P0042719 Slx4 protein_coding protein_coding MGP_CASTEiJ_T0042720.1 MGP_CASTEiJ_G0021718.1 mouse_genomes_project 16 457921 460692 - MGP_CASTEiJ_P0042720 Slx4 protein_coding protein_coding MGP_CASTEiJ_T0042721.1 MGP_CASTEiJ_G0021718.1 mouse_genomes_project 16 458119 460674 - MGP_CASTEiJ_P0042721 Slx4 protein_coding protein_coding MGP_CASTEiJ_T0043552.1 MGP_CASTEiJ_G0021910.1 mouse_genomes_project 16 17880674 17882747 - MGP_CASTEiJ_P0043552 Camk2n2 protein_coding protein_coding MGP_CASTEiJ_T0043202.1 MGP_CASTEiJ_G0021835.1 mouse_genomes_project 16 14289942 14291854 + MGP_CASTEiJ_P0043202 Tmem191c protein_coding protein_coding MGP_CASTEiJ_T0043203.1 MGP_CASTEiJ_G0021835.1 mouse_genomes_project 16 14289987 14292339 + MGP_CASTEiJ_P0043203 Tmem191c protein_coding protein_coding MGP_CASTEiJ_T0043204.1 MGP_CASTEiJ_G0021835.1 mouse_genomes_project 16 14290006 14291158 + Tmem191c protein_coding processed_transcript MGP_CASTEiJ_T0043205.1 MGP_CASTEiJ_G0021835.1 mouse_genomes_project 16 14290020 14290785 + Tmem191c protein_coding retained_intron MGP_CASTEiJ_T0043206.1 MGP_CASTEiJ_G0021835.1 mouse_genomes_project 16 14290020 14292335 + MGP_CASTEiJ_P0043206 Tmem191c protein_coding protein_coding MGP_CASTEiJ_T0043207.1 MGP_CASTEiJ_G0021835.1 mouse_genomes_project 16 14290026 14291080 + Tmem191c protein_coding processed_transcript MGP_CASTEiJ_T0043208.1 MGP_CASTEiJ_G0021835.1 mouse_genomes_project 16 14290112 14291415 + MGP_CASTEiJ_P0043208 Tmem191c protein_coding protein_coding MGP_CASTEiJ_T0043209.1 MGP_CASTEiJ_G0021835.1 mouse_genomes_project 16 14290123 14292339 + MGP_CASTEiJ_P0043209 Tmem191c protein_coding protein_coding MGP_CASTEiJ_T0043210.1 MGP_CASTEiJ_G0021835.1 mouse_genomes_project 16 14290354 14292339 + MGP_CASTEiJ_P0043210 Tmem191c protein_coding protein_coding MGP_CASTEiJ_T0043211.1 MGP_CASTEiJ_G0021835.1 mouse_genomes_project 16 14290537 14291883 + MGP_CASTEiJ_P0043211 Tmem191c protein_coding protein_coding MGP_CASTEiJ_T0043212.1 MGP_CASTEiJ_G0021835.1 mouse_genomes_project 16 14290769 14291731 + Tmem191c protein_coding retained_intron MGP_CASTEiJ_T0043213.1 MGP_CASTEiJ_G0021835.1 mouse_genomes_project 16 14290783 14291844 + Tmem191c protein_coding retained_intron MGP_CASTEiJ_T0043214.1 MGP_CASTEiJ_G0021835.1 mouse_genomes_project 16 14291278 14296926 + Tmem191c protein_coding retained_intron MGP_CASTEiJ_T0042750.1 MGP_CASTEiJ_G0021724.1 mouse_genomes_project 16 1055636 1073058 - MGP_CASTEiJ_P0042750 Tfap4 protein_coding protein_coding MGP_CASTEiJ_T0044702.1 MGP_CASTEiJ_G0022210.1 mouse_genomes_project 16 75611388 75663807 - MGP_CASTEiJ_P0044702 Samsn1 protein_coding protein_coding MGP_CASTEiJ_T0044703.1 MGP_CASTEiJ_G0022210.1 mouse_genomes_project 16 75611389 75770068 - MGP_CASTEiJ_P0044703 Samsn1 protein_coding protein_coding MGP_CASTEiJ_T0044704.1 MGP_CASTEiJ_G0022210.1 mouse_genomes_project 16 75636809 75663737 - Samsn1 protein_coding retained_intron MGP_CASTEiJ_T0044705.1 MGP_CASTEiJ_G0022210.1 mouse_genomes_project 16 75638104 75663807 - Samsn1 protein_coding retained_intron MGP_CASTEiJ_T0044706.1 MGP_CASTEiJ_G0022210.1 mouse_genomes_project 16 75642246 75663776 - Samsn1 protein_coding retained_intron MGP_CASTEiJ_T0042999.1 MGP_CASTEiJ_G0021788.1 mouse_genomes_project 16 8875699 8887036 + Shisa9 protein_coding processed_transcript MGP_CASTEiJ_T0043000.1 MGP_CASTEiJ_G0021788.1 mouse_genomes_project 16 8876167 9186713 + MGP_CASTEiJ_P0043000 Shisa9 protein_coding protein_coding MGP_CASTEiJ_T0043001.1 MGP_CASTEiJ_G0021788.1 mouse_genomes_project 16 8876167 9185757 + MGP_CASTEiJ_P0043001 Shisa9 protein_coding protein_coding MGP_CASTEiJ_T0043002.1 MGP_CASTEiJ_G0021788.1 mouse_genomes_project 16 8876264 8881719 + Shisa9 protein_coding processed_transcript MGP_CASTEiJ_T0011073.1 MGP_CASTEiJ_G0009261.1 mouse_genomes_project 16 4891708 4891982 + Gm23476 misc_RNA misc_RNA MGP_CASTEiJ_T0044009.1 MGP_CASTEiJ_G0022020.1 mouse_genomes_project 16 32039163 32051552 - MGP_CASTEiJ_P0044009 Umps protein_coding protein_coding MGP_CASTEiJ_T0044010.1 MGP_CASTEiJ_G0022020.1 mouse_genomes_project 16 32039175 32051517 - MGP_CASTEiJ_P0044010 Umps protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042936.1 MGP_CASTEiJ_G0021771.1 mouse_genomes_project 16 7618076 7619805 - MGP_CASTEiJ_P0042936 Socs1 protein_coding protein_coding MGP_CASTEiJ_T0043459.1 MGP_CASTEiJ_G0021887.1 mouse_genomes_project 16 16733649 16734689 + MGP_CASTEiJ_P0043459 protein_coding protein_coding MGP_CASTEiJ_T0043014.1 MGP_CASTEiJ_G0021793.1 mouse_genomes_project 16 10606194 10612668 + MGP_CASTEiJ_P0043014 3110001I22Rik protein_coding protein_coding MGP_CASTEiJ_T0000913.1 MGP_CASTEiJ_G0000851.1 mouse_genomes_project 16 14984560 14985722 + TEC TEC MGP_CASTEiJ_T0044921.1 MGP_CASTEiJ_G0022292.1 mouse_genomes_project 16 92040285 92061353 + MGP_CASTEiJ_P0044921 Ifngr2 protein_coding protein_coding MGP_CASTEiJ_T0044922.1 MGP_CASTEiJ_G0022292.1 mouse_genomes_project 16 92042071 92056846 + MGP_CASTEiJ_P0044922 Ifngr2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044923.1 MGP_CASTEiJ_G0022292.1 mouse_genomes_project 16 92057503 92061353 + Ifngr2 protein_coding processed_transcript MGP_CASTEiJ_T0000933.1 MGP_CASTEiJ_G0000870.1 mouse_genomes_project 16 77412717 77416417 + TEC TEC MGP_CASTEiJ_T0000936.1 MGP_CASTEiJ_G0000873.1 mouse_genomes_project 16 77487356 77489487 + TEC TEC MGP_CASTEiJ_T0000937.1 MGP_CASTEiJ_G0000874.1 mouse_genomes_project 16 79532385 79532985 + TEC TEC MGP_CASTEiJ_T0100710.1 MGP_CASTEiJ_G0037623.1 mouse_genomes_project 16 20614368 20614546 + snoRNA snoRNA MGP_CASTEiJ_T0044178.1 MGP_CASTEiJ_G0022061.1 mouse_genomes_project 16 36104463 36109972 - Gm36028 protein_coding retained_intron MGP_CASTEiJ_T0044179.1 MGP_CASTEiJ_G0022061.1 mouse_genomes_project 16 36104463 36114698 - MGP_CASTEiJ_P0044179 Gm36028 protein_coding protein_coding MGP_CASTEiJ_T0044699.1 MGP_CASTEiJ_G0022209.1 mouse_genomes_project 16 75500028 75511683 - MGP_CASTEiJ_P0044699 Hspa13 protein_coding protein_coding MGP_CASTEiJ_T0044700.1 MGP_CASTEiJ_G0022209.1 mouse_genomes_project 16 75501471 75511653 - MGP_CASTEiJ_P0044700 Hspa13 protein_coding protein_coding MGP_CASTEiJ_T0044701.1 MGP_CASTEiJ_G0022209.1 mouse_genomes_project 16 75504026 75511644 - Hspa13 protein_coding retained_intron MGP_CASTEiJ_T0042925.1 MGP_CASTEiJ_G0021770.1 mouse_genomes_project 16 7367576 7577401 + MGP_CASTEiJ_P0042925 Clec16a protein_coding protein_coding MGP_CASTEiJ_T0042926.1 MGP_CASTEiJ_G0021770.1 mouse_genomes_project 16 7367576 7577401 + MGP_CASTEiJ_P0042926 Clec16a protein_coding protein_coding MGP_CASTEiJ_T0042927.1 MGP_CASTEiJ_G0021770.1 mouse_genomes_project 16 7367601 7577401 + MGP_CASTEiJ_P0042927 Clec16a protein_coding protein_coding MGP_CASTEiJ_T0042928.1 MGP_CASTEiJ_G0021770.1 mouse_genomes_project 16 7367614 7385604 + Clec16a protein_coding processed_transcript MGP_CASTEiJ_T0042929.1 MGP_CASTEiJ_G0021770.1 mouse_genomes_project 16 7367635 7549892 + MGP_CASTEiJ_P0042929 Clec16a protein_coding protein_coding MGP_CASTEiJ_T0042930.1 MGP_CASTEiJ_G0021770.1 mouse_genomes_project 16 7367646 7574348 + MGP_CASTEiJ_P0042930 Clec16a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0042931.1 MGP_CASTEiJ_G0021770.1 mouse_genomes_project 16 7367646 7521153 + MGP_CASTEiJ_P0042931 Clec16a protein_coding protein_coding MGP_CASTEiJ_T0042932.1 MGP_CASTEiJ_G0021770.1 mouse_genomes_project 16 7367646 7381940 + MGP_CASTEiJ_P0042932 Clec16a protein_coding protein_coding MGP_CASTEiJ_T0042933.1 MGP_CASTEiJ_G0021770.1 mouse_genomes_project 16 7423802 7574989 + MGP_CASTEiJ_P0042933 Clec16a protein_coding protein_coding MGP_CASTEiJ_T0042934.1 MGP_CASTEiJ_G0021770.1 mouse_genomes_project 16 7433875 7454590 + Clec16a protein_coding processed_transcript MGP_CASTEiJ_T0042935.1 MGP_CASTEiJ_G0021770.1 mouse_genomes_project 16 7453741 7463371 + Clec16a protein_coding processed_transcript MGP_CASTEiJ_T0098346.1 MGP_CASTEiJ_G0035277.1 mouse_genomes_project 16 29859147 29859559 - pseudogene pseudogene MGP_CASTEiJ_T0045054.1 MGP_CASTEiJ_G0022317.1 mouse_genomes_project 16 94868688 94916760 + MGP_CASTEiJ_P0045054 Sim2 protein_coding protein_coding MGP_CASTEiJ_T0045055.1 MGP_CASTEiJ_G0022317.1 mouse_genomes_project 16 94869198 94958154 + MGP_CASTEiJ_P0045055 Sim2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0101858.1 MGP_CASTEiJ_G0038601.1 mouse_genomes_project 16 17746463 17748933 + unitary_pseudogene unitary_pseudogene MGP_CASTEiJ_T0009852.1 MGP_CASTEiJ_G0008040.1 mouse_genomes_project 16 15360595 15360683 - Gm24572 miRNA miRNA MGP_CASTEiJ_T0098350.1 MGP_CASTEiJ_G0035281.1 mouse_genomes_project 16 58196967 58197897 - pseudogene pseudogene MGP_CASTEiJ_T0009878.1 MGP_CASTEiJ_G0008066.1 mouse_genomes_project 16 55047700 55047804 + Gm24047 miRNA miRNA MGP_CASTEiJ_T0042690.1 MGP_CASTEiJ_G0021714.1 mouse_genomes_project 16 337389 372461 + MGP_CASTEiJ_P0042690 Gm20695 protein_coding protein_coding MGP_CASTEiJ_T0042700.1 MGP_CASTEiJ_G0021714.1 mouse_genomes_project 16 351146 372430 + Gm20695 protein_coding processed_transcript MGP_CASTEiJ_T0043256.1 MGP_CASTEiJ_G0021843.1 mouse_genomes_project 16 14572373 14589857 - MGP_CASTEiJ_P0043256 Lrrc74b protein_coding protein_coding MGP_CASTEiJ_T0043257.1 MGP_CASTEiJ_G0021843.1 mouse_genomes_project 16 14572373 14589857 - MGP_CASTEiJ_P0043257 Lrrc74b protein_coding protein_coding MGP_CASTEiJ_T0043258.1 MGP_CASTEiJ_G0021843.1 mouse_genomes_project 16 14573336 14582221 - Lrrc74b protein_coding processed_transcript MGP_CASTEiJ_T0043259.1 MGP_CASTEiJ_G0021843.1 mouse_genomes_project 16 14576588 14589854 - MGP_CASTEiJ_P0043259 Lrrc74b protein_coding protein_coding MGP_CASTEiJ_T0044653.1 MGP_CASTEiJ_G0022196.1 mouse_genomes_project 16 64013602 64020505 - MGP_CASTEiJ_P0044653 Zfp654 protein_coding protein_coding MGP_CASTEiJ_T0044654.1 MGP_CASTEiJ_G0022196.1 mouse_genomes_project 16 64016520 64081334 - MGP_CASTEiJ_P0044654 Zfp654 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044655.1 MGP_CASTEiJ_G0022196.1 mouse_genomes_project 16 64018551 64081321 - MGP_CASTEiJ_P0044655 Zfp654 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044085.1 MGP_CASTEiJ_G0022042.1 mouse_genomes_project 16 34486623 34623986 - MGP_CASTEiJ_P0044085 Stfa3 protein_coding protein_coding MGP_CASTEiJ_T0042837.1 MGP_CASTEiJ_G0021746.1 mouse_genomes_project 16 1760721 1769167 - MGP_CASTEiJ_P0042837 Nagpa protein_coding protein_coding MGP_CASTEiJ_T0042838.1 MGP_CASTEiJ_G0021746.1 mouse_genomes_project 16 1760827 1762951 - Nagpa protein_coding processed_transcript MGP_CASTEiJ_T0042839.1 MGP_CASTEiJ_G0021746.1 mouse_genomes_project 16 1764998 1768662 - Nagpa protein_coding retained_intron MGP_CASTEiJ_T0044668.1 MGP_CASTEiJ_G0022202.1 mouse_genomes_project 16 65884892 66965508 - MGP_CASTEiJ_P0044668 Cadm2 protein_coding protein_coding MGP_CASTEiJ_T0044669.1 MGP_CASTEiJ_G0022202.1 mouse_genomes_project 16 65891161 66965432 - MGP_CASTEiJ_P0044669 Cadm2 protein_coding protein_coding MGP_CASTEiJ_T0044670.1 MGP_CASTEiJ_G0022202.1 mouse_genomes_project 16 65891608 66965508 - MGP_CASTEiJ_P0044670 Cadm2 protein_coding protein_coding MGP_CASTEiJ_T0044671.1 MGP_CASTEiJ_G0022202.1 mouse_genomes_project 16 65892511 66209431 - MGP_CASTEiJ_P0044671 Cadm2 protein_coding protein_coding MGP_CASTEiJ_T0044672.1 MGP_CASTEiJ_G0022202.1 mouse_genomes_project 16 66018615 66965102 - MGP_CASTEiJ_P0044672 Cadm2 protein_coding protein_coding MGP_CASTEiJ_T0044673.1 MGP_CASTEiJ_G0022202.1 mouse_genomes_project 16 66048001 66180137 - Cadm2 protein_coding processed_transcript MGP_CASTEiJ_T0045157.1 MGP_CASTEiJ_G0022332.1 mouse_genomes_project 16 97085237 97120121 - MGP_CASTEiJ_P0045157 Lca5l protein_coding protein_coding MGP_CASTEiJ_T0045158.1 MGP_CASTEiJ_G0022332.1 mouse_genomes_project 16 97085740 97107480 - MGP_CASTEiJ_P0045158 Lca5l protein_coding unknown_likely_coding MGP_CASTEiJ_T0045159.1 MGP_CASTEiJ_G0022332.1 mouse_genomes_project 16 97085902 97120128 - MGP_CASTEiJ_P0045159 Lca5l protein_coding protein_coding MGP_CASTEiJ_T0045160.1 MGP_CASTEiJ_G0022332.1 mouse_genomes_project 16 97087342 97120121 - Lca5l protein_coding retained_intron MGP_CASTEiJ_T0045161.1 MGP_CASTEiJ_G0022332.1 mouse_genomes_project 16 97109672 97120128 - Lca5l protein_coding processed_transcript MGP_CASTEiJ_T0045188.1 MGP_CASTEiJ_G0022341.1 mouse_genomes_project 16 98437259 98463729 - MGP_CASTEiJ_P0045188 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045189.1 MGP_CASTEiJ_G0022341.1 mouse_genomes_project 16 98442388 98463749 - MGP_CASTEiJ_P0045189 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045190.1 MGP_CASTEiJ_G0022341.1 mouse_genomes_project 16 98442390 98463747 - MGP_CASTEiJ_P0045190 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045191.1 MGP_CASTEiJ_G0022341.1 mouse_genomes_project 16 98442390 98463748 - MGP_CASTEiJ_P0045191 protein_coding protein_coding MGP_CASTEiJ_T0045192.1 MGP_CASTEiJ_G0022341.1 mouse_genomes_project 16 98442390 98463748 - MGP_CASTEiJ_P0045192 protein_coding protein_coding MGP_CASTEiJ_T0045193.1 MGP_CASTEiJ_G0022341.1 mouse_genomes_project 16 98458136 98463747 - MGP_CASTEiJ_P0045193 protein_coding protein_coding MGP_CASTEiJ_T0000144.1 MGP_CASTEiJ_G0000110.1 mouse_genomes_project 16 16465147 16465634 - MGP_CASTEiJ_P0000144 Iglv3 IG_V_gene IG_V_gene MGP_CASTEiJ_T0042811.1 MGP_CASTEiJ_G0021740.1 mouse_genomes_project 16 1563539 1564557 + MGP_CASTEiJ_P0042811 Smim22 protein_coding protein_coding MGP_CASTEiJ_T0042812.1 MGP_CASTEiJ_G0021740.1 mouse_genomes_project 16 1563567 1564293 + Smim22 protein_coding retained_intron MGP_CASTEiJ_T0042813.1 MGP_CASTEiJ_G0021740.1 mouse_genomes_project 16 1563588 1564560 + MGP_CASTEiJ_P0042813 Smim22 protein_coding protein_coding MGP_CASTEiJ_T0042814.1 MGP_CASTEiJ_G0021740.1 mouse_genomes_project 16 1563603 1564560 + Smim22 protein_coding processed_transcript MGP_CASTEiJ_T0042815.1 MGP_CASTEiJ_G0021740.1 mouse_genomes_project 16 1563603 1564560 + MGP_CASTEiJ_P0042815 Smim22 protein_coding protein_coding MGP_CASTEiJ_T0042816.1 MGP_CASTEiJ_G0021740.1 mouse_genomes_project 16 1563603 1564557 + MGP_CASTEiJ_P0042816 Smim22 protein_coding protein_coding MGP_CASTEiJ_T0042817.1 MGP_CASTEiJ_G0021740.1 mouse_genomes_project 16 1563609 1564560 + Smim22 protein_coding processed_transcript MGP_CASTEiJ_T0042818.1 MGP_CASTEiJ_G0021740.1 mouse_genomes_project 16 1564018 1564560 + Smim22 protein_coding retained_intron MGP_CASTEiJ_T0006648.1 MGP_CASTEiJ_G0005497.1 mouse_genomes_project 16 8045475 8058678 + 4930509G22Rik lincRNA lincRNA MGP_CASTEiJ_T0099509.1 MGP_CASTEiJ_G0036422.1 mouse_genomes_project 16 73081955 73082122 - Gm25699 snRNA snRNA MGP_CASTEiJ_T0102098.1 MGP_CASTEiJ_G0038823.1 mouse_genomes_project 16 73303 74239 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099473.1 MGP_CASTEiJ_G0036386.1 mouse_genomes_project 16 1620793 1620901 - Gm23483 snRNA snRNA MGP_CASTEiJ_T0042941.1 MGP_CASTEiJ_G0021775.1 mouse_genomes_project 16 7630723 7631284 - MGP_CASTEiJ_P0042941 Prm1 protein_coding protein_coding MGP_CASTEiJ_T0043021.1 MGP_CASTEiJ_G0021794.1 mouse_genomes_project 16 10650626 10666918 - MGP_CASTEiJ_P0043021 Pla2g10 protein_coding protein_coding MGP_CASTEiJ_T0043022.1 MGP_CASTEiJ_G0021794.1 mouse_genomes_project 16 10650628 10667458 - MGP_CASTEiJ_P0043022 Pla2g10 protein_coding protein_coding MGP_CASTEiJ_T0043023.1 MGP_CASTEiJ_G0021794.1 mouse_genomes_project 16 10650963 10667194 - Pla2g10 protein_coding processed_transcript MGP_CASTEiJ_T0043024.1 MGP_CASTEiJ_G0021794.1 mouse_genomes_project 16 10659735 10667154 - Pla2g10 protein_coding processed_transcript MGP_CASTEiJ_T0043026.1 MGP_CASTEiJ_G0021796.1 mouse_genomes_project 16 10783746 10800814 + MGP_CASTEiJ_P0043026 Ntan1 protein_coding protein_coding MGP_CASTEiJ_T0043027.1 MGP_CASTEiJ_G0021796.1 mouse_genomes_project 16 10783772 10797687 + Ntan1 protein_coding processed_transcript MGP_CASTEiJ_T0043028.1 MGP_CASTEiJ_G0021796.1 mouse_genomes_project 16 10783794 10797804 + Ntan1 protein_coding processed_transcript MGP_CASTEiJ_T0043029.1 MGP_CASTEiJ_G0021796.1 mouse_genomes_project 16 10783801 10800811 + Ntan1 protein_coding processed_transcript MGP_CASTEiJ_T0043030.1 MGP_CASTEiJ_G0021796.1 mouse_genomes_project 16 10783839 10791610 + Ntan1 protein_coding retained_intron MGP_CASTEiJ_T0043031.1 MGP_CASTEiJ_G0021796.1 mouse_genomes_project 16 10783851 10801445 + MGP_CASTEiJ_P0043031 Ntan1 protein_coding protein_coding MGP_CASTEiJ_T0043032.1 MGP_CASTEiJ_G0021796.1 mouse_genomes_project 16 10796858 10797941 + Ntan1 protein_coding retained_intron MGP_CASTEiJ_T0043035.1 MGP_CASTEiJ_G0021796.1 mouse_genomes_project 16 10799444 10800529 + Ntan1 protein_coding retained_intron MGP_CASTEiJ_T0012770.1 MGP_CASTEiJ_G0010933.1 mouse_genomes_project 16 17807741 17808026 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016758.1 MGP_CASTEiJ_G0014636.1 mouse_genomes_project 16 65886586 65894042 + 1700010K23Rik processed_transcript processed_transcript MGP_CASTEiJ_T0009885.1 MGP_CASTEiJ_G0008073.1 mouse_genomes_project 16 75509162 75509266 + Gm22923 miRNA miRNA MGP_CASTEiJ_T0042869.1 MGP_CASTEiJ_G0021754.1 mouse_genomes_project 16 5311095 5313241 - MGP_CASTEiJ_P0042869 protein_coding protein_coding MGP_CASTEiJ_T0044302.1 MGP_CASTEiJ_G0022091.1 mouse_genomes_project 16 42646433 42670312 + MGP_CASTEiJ_P0044302 Naa50 protein_coding protein_coding MGP_CASTEiJ_T0044303.1 MGP_CASTEiJ_G0022091.1 mouse_genomes_project 16 42646456 42671204 + MGP_CASTEiJ_P0044303 Naa50 protein_coding protein_coding MGP_CASTEiJ_T0044304.1 MGP_CASTEiJ_G0022091.1 mouse_genomes_project 16 42646489 42670310 + MGP_CASTEiJ_P0044304 Naa50 protein_coding protein_coding MGP_CASTEiJ_T0044305.1 MGP_CASTEiJ_G0022091.1 mouse_genomes_project 16 42646495 42668992 + MGP_CASTEiJ_P0044305 Naa50 protein_coding protein_coding MGP_CASTEiJ_T0044696.1 MGP_CASTEiJ_G0022208.1 mouse_genomes_project 16 75353877 75363694 + MGP_CASTEiJ_P0044696 Rbm11 protein_coding protein_coding MGP_CASTEiJ_T0044697.1 MGP_CASTEiJ_G0022208.1 mouse_genomes_project 16 75353877 75365759 + MGP_CASTEiJ_P0044697 Rbm11 protein_coding protein_coding MGP_CASTEiJ_T0044698.1 MGP_CASTEiJ_G0022208.1 mouse_genomes_project 16 75353924 75365755 + MGP_CASTEiJ_P0044698 Rbm11 protein_coding protein_coding MGP_CASTEiJ_T0016750.1 MGP_CASTEiJ_G0014631.1 mouse_genomes_project 16 30968309 31104748 - Gm17106 processed_transcript processed_transcript MGP_CASTEiJ_T0006696.1 MGP_CASTEiJ_G0005534.1 mouse_genomes_project 16 87968815 87978133 + 2810407A14Rik lincRNA lincRNA MGP_CASTEiJ_T0006697.1 MGP_CASTEiJ_G0005534.1 mouse_genomes_project 16 87972273 88028901 + 2810407A14Rik lincRNA lincRNA MGP_CASTEiJ_T0043804.1 MGP_CASTEiJ_G0021974.1 mouse_genomes_project 16 28392179 28421005 - MGP_CASTEiJ_P0043804 Lsg1 protein_coding protein_coding MGP_CASTEiJ_T0043805.1 MGP_CASTEiJ_G0021974.1 mouse_genomes_project 16 28393056 28421002 - MGP_CASTEiJ_P0043805 Lsg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043806.1 MGP_CASTEiJ_G0021974.1 mouse_genomes_project 16 28396386 28420976 - Lsg1 protein_coding retained_intron MGP_CASTEiJ_T0043807.1 MGP_CASTEiJ_G0021974.1 mouse_genomes_project 16 28396738 28399766 - Lsg1 protein_coding retained_intron MGP_CASTEiJ_T0043808.1 MGP_CASTEiJ_G0021974.1 mouse_genomes_project 16 28399669 28421005 - Lsg1 protein_coding retained_intron MGP_CASTEiJ_T0043809.1 MGP_CASTEiJ_G0021974.1 mouse_genomes_project 16 28404627 28418892 - MGP_CASTEiJ_P0043809 Lsg1 protein_coding protein_coding MGP_CASTEiJ_T0043810.1 MGP_CASTEiJ_G0021974.1 mouse_genomes_project 16 28406569 28420987 - Lsg1 protein_coding retained_intron MGP_CASTEiJ_T0043811.1 MGP_CASTEiJ_G0021974.1 mouse_genomes_project 16 28415529 28420952 - Lsg1 protein_coding retained_intron MGP_CASTEiJ_T0012760.1 MGP_CASTEiJ_G0010923.1 mouse_genomes_project 16 14079984 14080677 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099515.1 MGP_CASTEiJ_G0036428.1 mouse_genomes_project 16 92440006 92440113 - Gm25245 snRNA snRNA MGP_CASTEiJ_T0044142.1 MGP_CASTEiJ_G0022054.1 mouse_genomes_project 16 35213627 35305773 + MGP_CASTEiJ_P0044142 Polq protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044143.1 MGP_CASTEiJ_G0022054.1 mouse_genomes_project 16 35213627 35305368 + MGP_CASTEiJ_P0044143 Polq protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044144.1 MGP_CASTEiJ_G0022054.1 mouse_genomes_project 16 35213627 35305368 + MGP_CASTEiJ_P0044144 Polq protein_coding protein_coding MGP_CASTEiJ_T0044145.1 MGP_CASTEiJ_G0022054.1 mouse_genomes_project 16 35213627 35305793 + MGP_CASTEiJ_P0044145 Polq protein_coding protein_coding MGP_CASTEiJ_T0044146.1 MGP_CASTEiJ_G0022054.1 mouse_genomes_project 16 35213656 35221099 + Polq protein_coding retained_intron MGP_CASTEiJ_T0044147.1 MGP_CASTEiJ_G0022054.1 mouse_genomes_project 16 35245837 35271323 + Polq protein_coding retained_intron MGP_CASTEiJ_T0044148.1 MGP_CASTEiJ_G0022054.1 mouse_genomes_project 16 35295318 35305793 + Polq protein_coding retained_intron MGP_CASTEiJ_T0044439.1 MGP_CASTEiJ_G0022125.1 mouse_genomes_project 16 47539212 47541101 + MGP_CASTEiJ_P0044439 Retnlg protein_coding protein_coding MGP_CASTEiJ_T0043654.1 MGP_CASTEiJ_G0021931.1 mouse_genomes_project 16 20261528 20267755 - MGP_CASTEiJ_P0043654 Crygs protein_coding protein_coding MGP_CASTEiJ_T0045181.1 MGP_CASTEiJ_G0022337.1 mouse_genomes_project 16 97365803 97387153 - MGP_CASTEiJ_P0045181 Itgb2l protein_coding protein_coding MGP_CASTEiJ_T0045182.1 MGP_CASTEiJ_G0022337.1 mouse_genomes_project 16 97365807 97387148 - MGP_CASTEiJ_P0045182 Itgb2l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045183.1 MGP_CASTEiJ_G0022337.1 mouse_genomes_project 16 97365891 97387146 - MGP_CASTEiJ_P0045183 Itgb2l protein_coding protein_coding MGP_CASTEiJ_T0045184.1 MGP_CASTEiJ_G0022337.1 mouse_genomes_project 16 97370244 97372659 - Itgb2l protein_coding processed_transcript MGP_CASTEiJ_T0044652.1 MGP_CASTEiJ_G0022195.1 mouse_genomes_project 16 63674332 63675668 - MGP_CASTEiJ_P0044652 Csnka2ip protein_coding protein_coding MGP_CASTEiJ_T0044588.1 MGP_CASTEiJ_G0022166.1 mouse_genomes_project 16 57795412 57797433 - MGP_CASTEiJ_P0044588 Olfr173 protein_coding protein_coding MGP_CASTEiJ_T0044589.1 MGP_CASTEiJ_G0022166.1 mouse_genomes_project 16 57796939 57799770 - MGP_CASTEiJ_P0044589 Olfr173 protein_coding protein_coding MGP_CASTEiJ_T0045185.1 MGP_CASTEiJ_G0022338.1 mouse_genomes_project 16 97413412 97474374 + MGP_CASTEiJ_P0045185 Pcp4 protein_coding protein_coding MGP_CASTEiJ_T0045030.1 MGP_CASTEiJ_G0022311.1 mouse_genomes_project 16 94290788 94293437 + MGP_CASTEiJ_P0045030 Cbr1 protein_coding protein_coding MGP_CASTEiJ_T0043613.1 MGP_CASTEiJ_G0021920.1 mouse_genomes_project 16 18791456 18953783 + MGP_CASTEiJ_P0043613 Vps8 protein_coding protein_coding MGP_CASTEiJ_T0043614.1 MGP_CASTEiJ_G0021920.1 mouse_genomes_project 16 18791456 19017851 + MGP_CASTEiJ_P0043614 Vps8 protein_coding protein_coding MGP_CASTEiJ_T0043615.1 MGP_CASTEiJ_G0021920.1 mouse_genomes_project 16 18791456 19017851 + MGP_CASTEiJ_P0043615 Vps8 protein_coding protein_coding MGP_CASTEiJ_T0043616.1 MGP_CASTEiJ_G0021920.1 mouse_genomes_project 16 18791507 19017851 + MGP_CASTEiJ_P0043616 Vps8 protein_coding protein_coding MGP_CASTEiJ_T0043617.1 MGP_CASTEiJ_G0021920.1 mouse_genomes_project 16 18791534 18917590 + MGP_CASTEiJ_P0043617 Vps8 protein_coding protein_coding MGP_CASTEiJ_T0043618.1 MGP_CASTEiJ_G0021920.1 mouse_genomes_project 16 18791539 19017843 + MGP_CASTEiJ_P0043618 Vps8 protein_coding protein_coding MGP_CASTEiJ_T0043619.1 MGP_CASTEiJ_G0021920.1 mouse_genomes_project 16 18791610 18803369 + MGP_CASTEiJ_P0043619 Vps8 protein_coding protein_coding MGP_CASTEiJ_T0043620.1 MGP_CASTEiJ_G0021920.1 mouse_genomes_project 16 18840536 19014742 + MGP_CASTEiJ_P0043620 Vps8 protein_coding protein_coding MGP_CASTEiJ_T0043621.1 MGP_CASTEiJ_G0021920.1 mouse_genomes_project 16 18878159 19017846 + MGP_CASTEiJ_P0043621 Vps8 protein_coding protein_coding MGP_CASTEiJ_T0043622.1 MGP_CASTEiJ_G0021920.1 mouse_genomes_project 16 18897470 18903187 + Vps8 protein_coding retained_intron MGP_CASTEiJ_T0043623.1 MGP_CASTEiJ_G0021920.1 mouse_genomes_project 16 18897540 18932737 + MGP_CASTEiJ_P0043623 Vps8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043624.1 MGP_CASTEiJ_G0021920.1 mouse_genomes_project 16 18942530 18955816 + Vps8 protein_coding retained_intron MGP_CASTEiJ_T0043625.1 MGP_CASTEiJ_G0021920.1 mouse_genomes_project 16 18998055 19017586 + Vps8 protein_coding processed_transcript MGP_CASTEiJ_T0102107.1 MGP_CASTEiJ_G0038832.1 mouse_genomes_project 16 58062880 58063607 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000042.1 MGP_CASTEiJ_G0000035.1 mouse_genomes_project 16 16368876 16368918 - MGP_CASTEiJ_P0000042 Iglj4 IG_J_gene IG_J_gene MGP_CASTEiJ_T0044508.1 MGP_CASTEiJ_G0022143.1 mouse_genomes_project 16 55024511 55029740 - MGP_CASTEiJ_P0044508 Trmt10c protein_coding protein_coding MGP_CASTEiJ_T0042682.1 MGP_CASTEiJ_G0021710.1 mouse_genomes_project 16 287638 288577 + MGP_CASTEiJ_P0042682 Olfr15 protein_coding protein_coding MGP_CASTEiJ_T0099491.1 MGP_CASTEiJ_G0036404.1 mouse_genomes_project 16 33544496 33544645 - Gm23518 snRNA snRNA MGP_CASTEiJ_T0098351.1 MGP_CASTEiJ_G0035282.1 mouse_genomes_project 16 89021782 89023693 + pseudogene pseudogene MGP_CASTEiJ_T0043527.1 MGP_CASTEiJ_G0021906.1 mouse_genomes_project 16 17810361 17826869 + MGP_CASTEiJ_P0043527 Abcf3 protein_coding protein_coding MGP_CASTEiJ_T0043528.1 MGP_CASTEiJ_G0021906.1 mouse_genomes_project 16 17811455 17815436 + Abcf3 protein_coding retained_intron MGP_CASTEiJ_T0043529.1 MGP_CASTEiJ_G0021906.1 mouse_genomes_project 16 17812364 17824355 + Abcf3 protein_coding retained_intron MGP_CASTEiJ_T0043530.1 MGP_CASTEiJ_G0021906.1 mouse_genomes_project 16 17824821 17825756 + Abcf3 protein_coding retained_intron MGP_CASTEiJ_T0043531.1 MGP_CASTEiJ_G0021906.1 mouse_genomes_project 16 17825135 17826305 + Abcf3 protein_coding retained_intron MGP_CASTEiJ_T0003569.1 MGP_CASTEiJ_G0003235.1 mouse_genomes_project 16 48455500 48497043 - Gm15518 antisense antisense MGP_CASTEiJ_T0043747.1 MGP_CASTEiJ_G0021960.1 mouse_genomes_project 16 25087862 25149570 + MGP_CASTEiJ_P0043747 Ccdc50 protein_coding protein_coding MGP_CASTEiJ_T0043748.1 MGP_CASTEiJ_G0021960.1 mouse_genomes_project 16 25088009 25143747 + MGP_CASTEiJ_P0043748 Ccdc50 protein_coding protein_coding MGP_CASTEiJ_T0043749.1 MGP_CASTEiJ_G0021960.1 mouse_genomes_project 16 25088009 25137024 + MGP_CASTEiJ_P0043749 Ccdc50 protein_coding protein_coding MGP_CASTEiJ_T0043750.1 MGP_CASTEiJ_G0021960.1 mouse_genomes_project 16 25088966 25135704 + MGP_CASTEiJ_P0043750 Ccdc50 protein_coding protein_coding MGP_CASTEiJ_T0043751.1 MGP_CASTEiJ_G0021960.1 mouse_genomes_project 16 25088998 25090129 + Ccdc50 protein_coding processed_transcript MGP_CASTEiJ_T0100704.1 MGP_CASTEiJ_G0037617.1 mouse_genomes_project 16 15313459 15313585 - Gm25777 snoRNA snoRNA MGP_CASTEiJ_T0003580.1 MGP_CASTEiJ_G0003244.1 mouse_genomes_project 16 97015138 97031251 + Gm15341 antisense antisense MGP_CASTEiJ_T0043718.1 MGP_CASTEiJ_G0021950.1 mouse_genomes_project 16 22934350 23082082 + MGP_CASTEiJ_P0043718 Tprg protein_coding protein_coding MGP_CASTEiJ_T0043719.1 MGP_CASTEiJ_G0021950.1 mouse_genomes_project 16 22934354 22970720 + Tprg protein_coding retained_intron MGP_CASTEiJ_T0044647.1 MGP_CASTEiJ_G0022193.1 mouse_genomes_project 16 62000180 62075006 + MGP_CASTEiJ_P0044647 Pros1 protein_coding protein_coding MGP_CASTEiJ_T0044648.1 MGP_CASTEiJ_G0022193.1 mouse_genomes_project 16 62000271 62069032 + MGP_CASTEiJ_P0044648 Pros1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044649.1 MGP_CASTEiJ_G0022193.1 mouse_genomes_project 16 62042522 62045738 + Pros1 protein_coding retained_intron MGP_CASTEiJ_T0044650.1 MGP_CASTEiJ_G0022193.1 mouse_genomes_project 16 62067061 62074050 + Pros1 protein_coding processed_transcript MGP_CASTEiJ_T0044579.1 MGP_CASTEiJ_G0022162.1 mouse_genomes_project 16 57662875 57674261 + MGP_CASTEiJ_P0044579 Cpox protein_coding protein_coding MGP_CASTEiJ_T0044437.1 MGP_CASTEiJ_G0022123.1 mouse_genomes_project 16 47479999 47482057 + MGP_CASTEiJ_P0044437 Retnlb protein_coding protein_coding MGP_CASTEiJ_T0012783.1 MGP_CASTEiJ_G0010946.1 mouse_genomes_project 16 29900110 29900341 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044335.1 MGP_CASTEiJ_G0022097.1 mouse_genomes_project 16 43265540 43278850 + MGP_CASTEiJ_P0044335 Nepro protein_coding protein_coding MGP_CASTEiJ_T0044336.1 MGP_CASTEiJ_G0022097.1 mouse_genomes_project 16 43265596 43272934 + MGP_CASTEiJ_P0044336 Nepro protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044337.1 MGP_CASTEiJ_G0022097.1 mouse_genomes_project 16 43265596 43278135 + MGP_CASTEiJ_P0044337 Nepro protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044338.1 MGP_CASTEiJ_G0022097.1 mouse_genomes_project 16 43267409 43275693 + Nepro protein_coding retained_intron MGP_CASTEiJ_T0044339.1 MGP_CASTEiJ_G0022097.1 mouse_genomes_project 16 43268361 43276293 + MGP_CASTEiJ_P0044339 Nepro protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009883.1 MGP_CASTEiJ_G0008071.1 mouse_genomes_project 16 73647896 73647994 + Gm24272 miRNA miRNA MGP_CASTEiJ_T0006694.1 MGP_CASTEiJ_G0005533.1 mouse_genomes_project 16 84809203 84821244 + Mir155hg lincRNA lincRNA MGP_CASTEiJ_T0006695.1 MGP_CASTEiJ_G0005533.1 mouse_genomes_project 16 84819021 84821244 + Mir155hg lincRNA lincRNA MGP_CASTEiJ_T0100709.1 MGP_CASTEiJ_G0037622.1 mouse_genomes_project 16 20613995 20614120 + Gm24201 snoRNA snoRNA MGP_CASTEiJ_T0044617.1 MGP_CASTEiJ_G0022184.1 mouse_genomes_project 16 58406578 58407496 - MGP_CASTEiJ_P0044617 Olfr209 protein_coding protein_coding MGP_CASTEiJ_T0044716.1 MGP_CASTEiJ_G0022214.1 mouse_genomes_project 16 78114762 78155009 + MGP_CASTEiJ_P0044716 Cxadr protein_coding protein_coding MGP_CASTEiJ_T0044717.1 MGP_CASTEiJ_G0022214.1 mouse_genomes_project 16 78114971 78163320 + MGP_CASTEiJ_P0044717 Cxadr protein_coding unknown_likely_coding MGP_CASTEiJ_T0044718.1 MGP_CASTEiJ_G0022214.1 mouse_genomes_project 16 78115022 78168000 + MGP_CASTEiJ_P0044718 Cxadr protein_coding protein_coding MGP_CASTEiJ_T0042862.1 MGP_CASTEiJ_G0021753.1 mouse_genomes_project 16 5198475 5309651 + MGP_CASTEiJ_P0042862 Abat protein_coding protein_coding MGP_CASTEiJ_T0042863.1 MGP_CASTEiJ_G0021753.1 mouse_genomes_project 16 5198527 5287786 + MGP_CASTEiJ_P0042863 Abat protein_coding protein_coding MGP_CASTEiJ_T0042864.1 MGP_CASTEiJ_G0021753.1 mouse_genomes_project 16 5198529 5266043 + Abat protein_coding retained_intron MGP_CASTEiJ_T0042865.1 MGP_CASTEiJ_G0021753.1 mouse_genomes_project 16 5198531 5307639 + MGP_CASTEiJ_P0042865 Abat protein_coding protein_coding MGP_CASTEiJ_T0042866.1 MGP_CASTEiJ_G0021753.1 mouse_genomes_project 16 5258234 5290232 + MGP_CASTEiJ_P0042866 Abat protein_coding protein_coding MGP_CASTEiJ_T0042867.1 MGP_CASTEiJ_G0021753.1 mouse_genomes_project 16 5268750 5287786 + MGP_CASTEiJ_P0042867 Abat protein_coding protein_coding MGP_CASTEiJ_T0042868.1 MGP_CASTEiJ_G0021753.1 mouse_genomes_project 16 5300234 5306646 + Abat protein_coding processed_transcript MGP_CASTEiJ_T0043368.1 MGP_CASTEiJ_G0021868.1 mouse_genomes_project 16 15380308 15403868 - MGP_CASTEiJ_P0043368 Tango2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043369.1 MGP_CASTEiJ_G0021868.1 mouse_genomes_project 16 15380310 15424982 - MGP_CASTEiJ_P0043369 Tango2 protein_coding protein_coding MGP_CASTEiJ_T0043370.1 MGP_CASTEiJ_G0021868.1 mouse_genomes_project 16 15380706 15383661 - Tango2 protein_coding retained_intron MGP_CASTEiJ_T0043371.1 MGP_CASTEiJ_G0021868.1 mouse_genomes_project 16 15387984 15391437 - Tango2 protein_coding processed_transcript MGP_CASTEiJ_T0043372.1 MGP_CASTEiJ_G0021868.1 mouse_genomes_project 16 15390767 15393054 - Tango2 protein_coding retained_intron MGP_CASTEiJ_T0043373.1 MGP_CASTEiJ_G0021868.1 mouse_genomes_project 16 15390875 15430380 - MGP_CASTEiJ_P0043373 Tango2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043374.1 MGP_CASTEiJ_G0021868.1 mouse_genomes_project 16 15390883 15424957 - MGP_CASTEiJ_P0043374 Tango2 protein_coding protein_coding MGP_CASTEiJ_T0043375.1 MGP_CASTEiJ_G0021868.1 mouse_genomes_project 16 15392447 15403869 - Tango2 protein_coding retained_intron MGP_CASTEiJ_T0043376.1 MGP_CASTEiJ_G0021868.1 mouse_genomes_project 16 15396077 15403869 - Tango2 protein_coding retained_intron MGP_CASTEiJ_T0043377.1 MGP_CASTEiJ_G0021868.1 mouse_genomes_project 16 15400405 15430360 - Tango2 protein_coding retained_intron MGP_CASTEiJ_T0044461.1 MGP_CASTEiJ_G0022130.1 mouse_genomes_project 16 48551840 48611399 + MGP_CASTEiJ_P0044461 Cd47 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044462.1 MGP_CASTEiJ_G0022130.1 mouse_genomes_project 16 48553036 48616952 + MGP_CASTEiJ_P0044462 Cd47 protein_coding protein_coding MGP_CASTEiJ_T0044463.1 MGP_CASTEiJ_G0022130.1 mouse_genomes_project 16 48565417 48611606 + MGP_CASTEiJ_P0044463 Cd47 protein_coding protein_coding MGP_CASTEiJ_T0012782.1 MGP_CASTEiJ_G0010945.1 mouse_genomes_project 16 29881098 29881543 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044656.1 MGP_CASTEiJ_G0022197.1 mouse_genomes_project 16 64081638 64089415 + MGP_CASTEiJ_P0044656 Cggbp1 protein_coding protein_coding MGP_CASTEiJ_T0044657.1 MGP_CASTEiJ_G0022197.1 mouse_genomes_project 16 64082368 64085654 + Cggbp1 protein_coding retained_intron MGP_CASTEiJ_T0012805.1 MGP_CASTEiJ_G0010968.1 mouse_genomes_project 16 52838703 52839075 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044289.1 MGP_CASTEiJ_G0022088.1 mouse_genomes_project 16 42475358 42485368 - MGP_CASTEiJ_P0044289 Zdhhc23 protein_coding protein_coding MGP_CASTEiJ_T0044290.1 MGP_CASTEiJ_G0022088.1 mouse_genomes_project 16 42475426 42486011 - MGP_CASTEiJ_P0044290 Zdhhc23 protein_coding unknown_likely_coding MGP_CASTEiJ_T0011077.1 MGP_CASTEiJ_G0009265.1 mouse_genomes_project 16 20960979 20961293 - Gm23430 misc_RNA misc_RNA MGP_CASTEiJ_T0003539.1 MGP_CASTEiJ_G0003212.1 mouse_genomes_project 16 14138895 14139706 + Gm15646 antisense antisense MGP_CASTEiJ_T0012778.1 MGP_CASTEiJ_G0010941.1 mouse_genomes_project 16 23397014 23397935 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0044829.1 MGP_CASTEiJ_G0022268.1 mouse_genomes_project 16 89721407 89722107 - MGP_CASTEiJ_P0044829 Krtap21-1 protein_coding protein_coding MGP_CASTEiJ_T0043230.1 MGP_CASTEiJ_G0021839.1 mouse_genomes_project 16 14472104 14509375 + MGP_CASTEiJ_P0043230 Crkl protein_coding protein_coding MGP_CASTEiJ_T0044890.1 MGP_CASTEiJ_G0022283.1 mouse_genomes_project 16 91461266 91493017 - MGP_CASTEiJ_P0044890 Paxbp1 protein_coding protein_coding MGP_CASTEiJ_T0044891.1 MGP_CASTEiJ_G0022283.1 mouse_genomes_project 16 91462149 91492638 - MGP_CASTEiJ_P0044891 Paxbp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044892.1 MGP_CASTEiJ_G0022283.1 mouse_genomes_project 16 91464082 91466459 - Paxbp1 protein_coding processed_transcript MGP_CASTEiJ_T0044893.1 MGP_CASTEiJ_G0022283.1 mouse_genomes_project 16 91472228 91478280 - Paxbp1 protein_coding retained_intron MGP_CASTEiJ_T0044894.1 MGP_CASTEiJ_G0022283.1 mouse_genomes_project 16 91472973 91477967 - MGP_CASTEiJ_P0044894 Paxbp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044895.1 MGP_CASTEiJ_G0022283.1 mouse_genomes_project 16 91473092 91475054 - Paxbp1 protein_coding retained_intron MGP_CASTEiJ_T0044896.1 MGP_CASTEiJ_G0022283.1 mouse_genomes_project 16 91477901 91482350 - Paxbp1 protein_coding retained_intron MGP_CASTEiJ_T0044897.1 MGP_CASTEiJ_G0022283.1 mouse_genomes_project 16 91479027 91492828 - Paxbp1 protein_coding processed_transcript MGP_CASTEiJ_T0043783.1 MGP_CASTEiJ_G0021968.1 mouse_genomes_project 16 27847387 27848573 + Hes1 protein_coding processed_transcript MGP_CASTEiJ_T0043784.1 MGP_CASTEiJ_G0021968.1 mouse_genomes_project 16 27848343 27850799 + MGP_CASTEiJ_P0043784 Hes1 protein_coding protein_coding MGP_CASTEiJ_T0043785.1 MGP_CASTEiJ_G0021968.1 mouse_genomes_project 16 27849099 27850126 + Hes1 protein_coding retained_intron MGP_CASTEiJ_T0043786.1 MGP_CASTEiJ_G0021968.1 mouse_genomes_project 16 27849340 27850322 + Hes1 protein_coding processed_transcript MGP_CASTEiJ_T0012758.1 MGP_CASTEiJ_G0010921.1 mouse_genomes_project 16 13836026 13836281 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012755.1 MGP_CASTEiJ_G0010918.1 mouse_genomes_project 16 12823731 12824014 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0043417.1 MGP_CASTEiJ_G0021873.1 mouse_genomes_project 16 15600747 15603505 + MGP_CASTEiJ_P0043417 Gm16314 protein_coding protein_coding MGP_CASTEiJ_T0044591.1 MGP_CASTEiJ_G0022168.1 mouse_genomes_project 16 57863715 57864645 - MGP_CASTEiJ_P0044591 Olfr177 protein_coding protein_coding MGP_CASTEiJ_T0044592.1 MGP_CASTEiJ_G0022168.1 mouse_genomes_project 16 57863715 57865473 - MGP_CASTEiJ_P0044592 Olfr177 protein_coding protein_coding MGP_CASTEiJ_T0044234.1 MGP_CASTEiJ_G0022078.1 mouse_genomes_project 16 37077888 37106123 - MGP_CASTEiJ_P0044234 Upk1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0044358.1 MGP_CASTEiJ_G0022102.1 mouse_genomes_project 16 43614216 43614997 + Ccdc80 protein_coding processed_transcript MGP_CASTEiJ_T0044359.1 MGP_CASTEiJ_G0022102.1 mouse_genomes_project 16 43614268 43615706 + Ccdc80 protein_coding processed_transcript MGP_CASTEiJ_T0044360.1 MGP_CASTEiJ_G0022102.1 mouse_genomes_project 16 43614404 43615162 + Ccdc80 protein_coding processed_transcript MGP_CASTEiJ_T0044361.1 MGP_CASTEiJ_G0022102.1 mouse_genomes_project 16 43614426 43652334 + MGP_CASTEiJ_P0044361 Ccdc80 protein_coding protein_coding MGP_CASTEiJ_T0044362.1 MGP_CASTEiJ_G0022102.1 mouse_genomes_project 16 43614489 43615972 + Ccdc80 protein_coding processed_transcript MGP_CASTEiJ_T0044363.1 MGP_CASTEiJ_G0022102.1 mouse_genomes_project 16 43614854 43652593 + MGP_CASTEiJ_P0044363 Ccdc80 protein_coding protein_coding MGP_CASTEiJ_T0044364.1 MGP_CASTEiJ_G0022102.1 mouse_genomes_project 16 43616041 43652335 + MGP_CASTEiJ_P0044364 Ccdc80 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043426.1 MGP_CASTEiJ_G0021878.1 mouse_genomes_project 16 15906310 15936340 - MGP_CASTEiJ_P0043426 Cdc45 protein_coding unknown_likely_coding MGP_CASTEiJ_T0043427.1 MGP_CASTEiJ_G0021878.1 mouse_genomes_project 16 15906312 15936715 - MGP_CASTEiJ_P0043427 Cdc45 protein_coding protein_coding MGP_CASTEiJ_T0043428.1 MGP_CASTEiJ_G0021878.1 mouse_genomes_project 16 15906318 15936369 - MGP_CASTEiJ_P0043428 Cdc45 protein_coding protein_coding MGP_CASTEiJ_T0043429.1 MGP_CASTEiJ_G0021878.1 mouse_genomes_project 16 15932082 15936730 - MGP_CASTEiJ_P0043429 Cdc45 protein_coding protein_coding MGP_CASTEiJ_T0016781.1 MGP_CASTEiJ_G0014642.1 mouse_genomes_project 16 92110795 92123488 + Gm15964 processed_transcript processed_transcript MGP_CASTEiJ_T0043311.1 MGP_CASTEiJ_G0021850.1 mouse_genomes_project 16 14856056 14867010 + MGP_CASTEiJ_P0043311 Scarf2 protein_coding protein_coding MGP_CASTEiJ_T0000924.1 MGP_CASTEiJ_G0000862.1 mouse_genomes_project 16 77180577 77183691 + TEC TEC MGP_CASTEiJ_T0000925.1 MGP_CASTEiJ_G0000862.1 mouse_genomes_project 16 77181403 77181765 + TEC pseudogene MGP_CASTEiJ_T0044825.1 MGP_CASTEiJ_G0022264.1 mouse_genomes_project 16 89452295 89452760 + MGP_CASTEiJ_P0044825 Gm10061 protein_coding protein_coding MGP_CASTEiJ_T0012750.1 MGP_CASTEiJ_G0010913.1 mouse_genomes_project 16 11019044 11020101 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0043875.1 MGP_CASTEiJ_G0021989.1 mouse_genomes_project 16 30027373 30035816 + MGP_CASTEiJ_P0043875 Cep19 protein_coding protein_coding MGP_CASTEiJ_T0043876.1 MGP_CASTEiJ_G0021989.1 mouse_genomes_project 16 30027490 30035108 + MGP_CASTEiJ_P0043876 Cep19 protein_coding protein_coding MGP_CASTEiJ_T0043877.1 MGP_CASTEiJ_G0021989.1 mouse_genomes_project 16 30027525 30035798 + MGP_CASTEiJ_P0043877 Cep19 protein_coding protein_coding MGP_CASTEiJ_T0044729.1 MGP_CASTEiJ_G0022220.1 mouse_genomes_project 16 81179383 81613441 + MGP_CASTEiJ_P0044729 Ncam2 protein_coding protein_coding MGP_CASTEiJ_T0044730.1 MGP_CASTEiJ_G0022220.1 mouse_genomes_project 16 81179383 81642934 + MGP_CASTEiJ_P0044730 Ncam2 protein_coding protein_coding MGP_CASTEiJ_T0044911.1 MGP_CASTEiJ_G0022290.1 mouse_genomes_project 16 91880108 91899909 + MGP_CASTEiJ_P0044911 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044912.1 MGP_CASTEiJ_G0022290.1 mouse_genomes_project 16 91880179 91899921 + MGP_CASTEiJ_P0044912 protein_coding protein_coding MGP_CASTEiJ_T0044913.1 MGP_CASTEiJ_G0022290.1 mouse_genomes_project 16 91880264 91894119 + protein_coding retained_intron MGP_CASTEiJ_T0044914.1 MGP_CASTEiJ_G0022290.1 mouse_genomes_project 16 91880264 91899015 + MGP_CASTEiJ_P0044914 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044915.1 MGP_CASTEiJ_G0022290.1 mouse_genomes_project 16 91880388 91888553 + protein_coding processed_transcript MGP_CASTEiJ_T0044456.1 MGP_CASTEiJ_G0022129.1 mouse_genomes_project 16 48389741 48462124 + MGP_CASTEiJ_P0044456 Ift57 protein_coding protein_coding MGP_CASTEiJ_T0044457.1 MGP_CASTEiJ_G0022129.1 mouse_genomes_project 16 48389781 48461124 + MGP_CASTEiJ_P0044457 Ift57 protein_coding unknown_likely_coding MGP_CASTEiJ_T0044458.1 MGP_CASTEiJ_G0022129.1 mouse_genomes_project 16 48389811 48459625 + MGP_CASTEiJ_P0044458 Ift57 protein_coding protein_coding MGP_CASTEiJ_T0044459.1 MGP_CASTEiJ_G0022129.1 mouse_genomes_project 16 48389862 48405726 + Ift57 protein_coding processed_transcript MGP_CASTEiJ_T0044460.1 MGP_CASTEiJ_G0022129.1 mouse_genomes_project 16 48404779 48461114 + MGP_CASTEiJ_P0044460 Ift57 protein_coding protein_coding MGP_CASTEiJ_T0044390.1 MGP_CASTEiJ_G0022108.1 mouse_genomes_project 16 44075483 44152156 + MGP_CASTEiJ_P0044390 Slc9c1 protein_coding protein_coding MGP_CASTEiJ_T0044391.1 MGP_CASTEiJ_G0022108.1 mouse_genomes_project 16 44086207 44152041 + MGP_CASTEiJ_P0044391 Slc9c1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0044392.1 MGP_CASTEiJ_G0022108.1 mouse_genomes_project 16 44086207 44152041 + MGP_CASTEiJ_P0044392 Slc9c1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043070.1 MGP_CASTEiJ_G0021805.1 mouse_genomes_project 16 11380559 11498734 + MGP_CASTEiJ_P0043070 Abcc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043071.1 MGP_CASTEiJ_G0021805.1 mouse_genomes_project 16 11380559 11498734 + MGP_CASTEiJ_P0043071 Abcc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043072.1 MGP_CASTEiJ_G0021805.1 mouse_genomes_project 16 11380559 11498734 + MGP_CASTEiJ_P0043072 Abcc1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0043073.1 MGP_CASTEiJ_G0021805.1 mouse_genomes_project 16 11380561 11500570 + MGP_CASTEiJ_P0043073 Abcc1 protein_coding protein_coding MGP_CASTEiJ_T0043074.1 MGP_CASTEiJ_G0021805.1 mouse_genomes_project 16 11380577 11418289 + MGP_CASTEiJ_P0043074 Abcc1 protein_coding protein_coding MGP_CASTEiJ_T0043075.1 MGP_CASTEiJ_G0021805.1 mouse_genomes_project 16 11380582 11427037 + MGP_CASTEiJ_P0043075 Abcc1 protein_coding protein_coding MGP_CASTEiJ_T0043076.1 MGP_CASTEiJ_G0021805.1 mouse_genomes_project 16 11384750 11413330 + MGP_CASTEiJ_P0043076 Abcc1 protein_coding protein_coding MGP_CASTEiJ_T0043077.1 MGP_CASTEiJ_G0021805.1 mouse_genomes_project 16 11415838 11416212 + Abcc1 protein_coding processed_transcript MGP_CASTEiJ_T0043078.1 MGP_CASTEiJ_G0021805.1 mouse_genomes_project 16 11424342 11443033 + Abcc1 protein_coding retained_intron MGP_CASTEiJ_T0043079.1 MGP_CASTEiJ_G0021805.1 mouse_genomes_project 16 11485856 11493084 + Abcc1 protein_coding retained_intron MGP_CASTEiJ_T0043080.1 MGP_CASTEiJ_G0021805.1 mouse_genomes_project 16 11485861 11498875 + Abcc1 protein_coding retained_intron MGP_CASTEiJ_T0009906.1 MGP_CASTEiJ_G0008094.1 mouse_genomes_project 17 22836715 22836779 - Mir6965 miRNA miRNA MGP_CASTEiJ_T0047532.1 MGP_CASTEiJ_G0022990.1 mouse_genomes_project 17 45108370 45222813 + MGP_CASTEiJ_P0047532 Clic5 protein_coding protein_coding MGP_CASTEiJ_T0045809.1 MGP_CASTEiJ_G0022552.1 mouse_genomes_project 17 23520944 23524520 + MGP_CASTEiJ_P0045809 Hagh protein_coding protein_coding MGP_CASTEiJ_T0045810.1 MGP_CASTEiJ_G0022552.1 mouse_genomes_project 17 23520947 23534560 + MGP_CASTEiJ_P0045810 Hagh protein_coding protein_coding MGP_CASTEiJ_T0045811.1 MGP_CASTEiJ_G0022552.1 mouse_genomes_project 17 23520961 23534563 + MGP_CASTEiJ_P0045811 Hagh protein_coding protein_coding MGP_CASTEiJ_T0045812.1 MGP_CASTEiJ_G0022552.1 mouse_genomes_project 17 23521035 23531375 + MGP_CASTEiJ_P0045812 Hagh protein_coding protein_coding MGP_CASTEiJ_T0045813.1 MGP_CASTEiJ_G0022552.1 mouse_genomes_project 17 23528562 23534717 + Hagh protein_coding processed_transcript MGP_CASTEiJ_T0102144.1 MGP_CASTEiJ_G0038869.1 mouse_genomes_project 17 34170110 34170496 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0047953.1 MGP_CASTEiJ_G0023099.1 mouse_genomes_project 17 55718197 55744615 - MGP_CASTEiJ_P0047953 Sult1c1 protein_coding protein_coding MGP_CASTEiJ_T0048252.1 MGP_CASTEiJ_G0023206.1 mouse_genomes_project 17 73511790 73529533 - MGP_CASTEiJ_P0048252 Myl12b protein_coding protein_coding MGP_CASTEiJ_T0048253.1 MGP_CASTEiJ_G0023206.1 mouse_genomes_project 17 73512140 73513879 - Myl12b protein_coding retained_intron MGP_CASTEiJ_T0048254.1 MGP_CASTEiJ_G0023206.1 mouse_genomes_project 17 73514860 73529276 - Myl12b protein_coding retained_intron MGP_CASTEiJ_T0102170.1 MGP_CASTEiJ_G0038895.1 mouse_genomes_project 17 36907703 36907751 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0046727.1 MGP_CASTEiJ_G0022768.1 mouse_genomes_project 17 33464530 33471137 + MGP_CASTEiJ_P0046727 Cd320 protein_coding protein_coding MGP_CASTEiJ_T0046728.1 MGP_CASTEiJ_G0022768.1 mouse_genomes_project 17 33464542 33467759 + Cd320 protein_coding retained_intron MGP_CASTEiJ_T0046729.1 MGP_CASTEiJ_G0022768.1 mouse_genomes_project 17 33464865 33470157 + MGP_CASTEiJ_P0046729 Cd320 protein_coding protein_coding MGP_CASTEiJ_T0048147.1 MGP_CASTEiJ_G0023182.1 mouse_genomes_project 17 67831039 67865459 - MGP_CASTEiJ_P0048147 Vapa protein_coding protein_coding MGP_CASTEiJ_T0048148.1 MGP_CASTEiJ_G0023182.1 mouse_genomes_project 17 67831455 67865232 - MGP_CASTEiJ_P0048148 Vapa protein_coding unknown_likely_coding MGP_CASTEiJ_T0000954.1 MGP_CASTEiJ_G0000890.1 mouse_genomes_project 17 53477301 53480455 + TEC TEC MGP_CASTEiJ_T0048081.1 MGP_CASTEiJ_G0023154.1 mouse_genomes_project 17 58879840 58890241 - MGP_CASTEiJ_P0048081 Khsrp protein_coding protein_coding MGP_CASTEiJ_T0046632.1 MGP_CASTEiJ_G0022744.1 mouse_genomes_project 17 32613830 32618196 + Zfp952 protein_coding processed_transcript MGP_CASTEiJ_T0046633.1 MGP_CASTEiJ_G0022744.1 mouse_genomes_project 17 32613898 32628515 + Zfp952 protein_coding processed_transcript MGP_CASTEiJ_T0046634.1 MGP_CASTEiJ_G0022744.1 mouse_genomes_project 17 32613898 32628515 + MGP_CASTEiJ_P0046634 Zfp952 protein_coding protein_coding MGP_CASTEiJ_T0046635.1 MGP_CASTEiJ_G0022744.1 mouse_genomes_project 17 32613902 32626144 + MGP_CASTEiJ_P0046635 Zfp952 protein_coding protein_coding MGP_CASTEiJ_T0000943.1 MGP_CASTEiJ_G0000880.1 mouse_genomes_project 17 29704708 29706175 + TEC TEC MGP_CASTEiJ_T0000944.1 MGP_CASTEiJ_G0000880.1 mouse_genomes_project 17 29705560 29706014 + TEC TEC MGP_CASTEiJ_T0045373.1 MGP_CASTEiJ_G0022399.1 mouse_genomes_project 17 10581249 10583647 + Tcp1 protein_coding processed_transcript MGP_CASTEiJ_T0045374.1 MGP_CASTEiJ_G0022399.1 mouse_genomes_project 17 10581877 10590093 + MGP_CASTEiJ_P0045374 Tcp1 protein_coding protein_coding MGP_CASTEiJ_T0045375.1 MGP_CASTEiJ_G0022399.1 mouse_genomes_project 17 10581929 10591104 + MGP_CASTEiJ_P0045375 Tcp1 protein_coding protein_coding MGP_CASTEiJ_T0045376.1 MGP_CASTEiJ_G0022399.1 mouse_genomes_project 17 10581986 10583912 + MGP_CASTEiJ_P0045376 Tcp1 protein_coding protein_coding MGP_CASTEiJ_T0045377.1 MGP_CASTEiJ_G0022399.1 mouse_genomes_project 17 10581996 10590099 + Tcp1 protein_coding retained_intron MGP_CASTEiJ_T0045378.1 MGP_CASTEiJ_G0022399.1 mouse_genomes_project 17 10581996 10585761 + Tcp1 protein_coding retained_intron MGP_CASTEiJ_T0045379.1 MGP_CASTEiJ_G0022399.1 mouse_genomes_project 17 10582022 10585091 + Tcp1 protein_coding retained_intron MGP_CASTEiJ_T0045380.1 MGP_CASTEiJ_G0022399.1 mouse_genomes_project 17 10585205 10586173 + Tcp1 protein_coding retained_intron MGP_CASTEiJ_T0045381.1 MGP_CASTEiJ_G0022399.1 mouse_genomes_project 17 10585649 10588265 + Tcp1 protein_coding retained_intron MGP_CASTEiJ_T0045382.1 MGP_CASTEiJ_G0022399.1 mouse_genomes_project 17 10585813 10586681 + Tcp1 protein_coding retained_intron MGP_CASTEiJ_T0102149.1 MGP_CASTEiJ_G0038874.1 mouse_genomes_project 17 35031350 35038697 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0047461.1 MGP_CASTEiJ_G0022949.1 mouse_genomes_project 17 38568132 38569211 + MGP_CASTEiJ_P0047461 Olfr135 protein_coding protein_coding MGP_CASTEiJ_T0012883.1 MGP_CASTEiJ_G0011046.1 mouse_genomes_project 17 55520956 55521294 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0047861.1 MGP_CASTEiJ_G0023074.1 mouse_genomes_project 17 49641585 49653428 + MGP_CASTEiJ_P0047861 Treml2 protein_coding protein_coding MGP_CASTEiJ_T0047467.1 MGP_CASTEiJ_G0022952.1 mouse_genomes_project 17 38685545 38686484 + MGP_CASTEiJ_P0047467 Olfr136 protein_coding protein_coding MGP_CASTEiJ_T0046393.1 MGP_CASTEiJ_G0022682.1 mouse_genomes_project 17 28210146 28218653 + MGP_CASTEiJ_P0046393 Cdkn1a protein_coding protein_coding MGP_CASTEiJ_T0046394.1 MGP_CASTEiJ_G0022682.1 mouse_genomes_project 17 28212983 28219845 + MGP_CASTEiJ_P0046394 Cdkn1a protein_coding protein_coding MGP_CASTEiJ_T0046395.1 MGP_CASTEiJ_G0022682.1 mouse_genomes_project 17 28217343 28218695 + MGP_CASTEiJ_P0046395 Cdkn1a protein_coding protein_coding MGP_CASTEiJ_T0048425.1 MGP_CASTEiJ_G0023266.1 mouse_genomes_project 17 83554489 83554813 - MGP_CASTEiJ_P0048425 Gm10190 protein_coding protein_coding MGP_CASTEiJ_T0045332.1 MGP_CASTEiJ_G0022386.1 mouse_genomes_project 17 7957828 8415692 - MGP_CASTEiJ_P0045332 Pacrg protein_coding protein_coding MGP_CASTEiJ_T0045333.1 MGP_CASTEiJ_G0022386.1 mouse_genomes_project 17 8136910 8197205 - Pacrg protein_coding processed_transcript MGP_CASTEiJ_T0045223.1 MGP_CASTEiJ_G0022353.1 mouse_genomes_project 17 2150397 2259918 + Arid1b protein_coding processed_transcript MGP_CASTEiJ_T0045224.1 MGP_CASTEiJ_G0022353.1 mouse_genomes_project 17 2153813 2511300 + MGP_CASTEiJ_P0045224 Arid1b protein_coding protein_coding MGP_CASTEiJ_T0045225.1 MGP_CASTEiJ_G0022353.1 mouse_genomes_project 17 2153969 2511728 + MGP_CASTEiJ_P0045225 Arid1b protein_coding protein_coding MGP_CASTEiJ_T0045226.1 MGP_CASTEiJ_G0022353.1 mouse_genomes_project 17 2155306 2260373 + Arid1b protein_coding retained_intron MGP_CASTEiJ_T0045227.1 MGP_CASTEiJ_G0022353.1 mouse_genomes_project 17 2198745 2291559 + Arid1b protein_coding retained_intron MGP_CASTEiJ_T0045229.1 MGP_CASTEiJ_G0022353.1 mouse_genomes_project 17 2459805 2511052 + MGP_CASTEiJ_P0045229 Arid1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0045581.1 MGP_CASTEiJ_G0022486.1 mouse_genomes_project 17 21871659 21893454 + MGP_CASTEiJ_P0045581 protein_coding protein_coding MGP_CASTEiJ_T0045220.1 MGP_CASTEiJ_G0022350.1 mouse_genomes_project 17 590886 632572 - MGP_CASTEiJ_P0045220 Tfb1m protein_coding protein_coding MGP_CASTEiJ_T0003656.1 MGP_CASTEiJ_G0003296.1 mouse_genomes_project 17 58900912 58906676 + Gm17168 antisense antisense MGP_CASTEiJ_T0047714.1 MGP_CASTEiJ_G0023031.1 mouse_genomes_project 17 47755096 47769535 + MGP_CASTEiJ_P0047714 Cul7 protein_coding protein_coding MGP_CASTEiJ_T0047715.1 MGP_CASTEiJ_G0023031.1 mouse_genomes_project 17 47755322 47760126 + Cul7 protein_coding retained_intron MGP_CASTEiJ_T0047716.1 MGP_CASTEiJ_G0023031.1 mouse_genomes_project 17 47755331 47762257 + Cul7 protein_coding retained_intron MGP_CASTEiJ_T0047717.1 MGP_CASTEiJ_G0023031.1 mouse_genomes_project 17 47756182 47769535 + MGP_CASTEiJ_P0047717 Cul7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047718.1 MGP_CASTEiJ_G0023031.1 mouse_genomes_project 17 47758129 47760827 + Cul7 protein_coding processed_transcript MGP_CASTEiJ_T0047719.1 MGP_CASTEiJ_G0023031.1 mouse_genomes_project 17 47758171 47769535 + MGP_CASTEiJ_P0047719 Cul7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047720.1 MGP_CASTEiJ_G0023031.1 mouse_genomes_project 17 47766963 47769535 + Cul7 protein_coding retained_intron MGP_CASTEiJ_T0047144.1 MGP_CASTEiJ_G0022852.1 mouse_genomes_project 17 35062104 35064221 - MGP_CASTEiJ_P0047144 Lta protein_coding protein_coding MGP_CASTEiJ_T0006802.1 MGP_CASTEiJ_G0005610.1 mouse_genomes_project 17 74087866 74088193 + lincRNA lincRNA MGP_CASTEiJ_T0102121.1 MGP_CASTEiJ_G0038846.1 mouse_genomes_project 17 18375292 18376043 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0046461.1 MGP_CASTEiJ_G0022698.1 mouse_genomes_project 17 29001387 29067372 - MGP_CASTEiJ_P0046461 Mdga1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0046462.1 MGP_CASTEiJ_G0022698.1 mouse_genomes_project 17 29006882 29068438 - MGP_CASTEiJ_P0046462 Mdga1 protein_coding protein_coding MGP_CASTEiJ_T0046463.1 MGP_CASTEiJ_G0022698.1 mouse_genomes_project 17 29006884 29067690 - MGP_CASTEiJ_P0046463 Mdga1 protein_coding protein_coding MGP_CASTEiJ_T0046464.1 MGP_CASTEiJ_G0022698.1 mouse_genomes_project 17 29010985 29023075 - Mdga1 protein_coding retained_intron MGP_CASTEiJ_T0046465.1 MGP_CASTEiJ_G0022698.1 mouse_genomes_project 17 29011195 29016018 - Mdga1 protein_coding processed_transcript MGP_CASTEiJ_T0046466.1 MGP_CASTEiJ_G0022698.1 mouse_genomes_project 17 29011212 29020539 - MGP_CASTEiJ_P0046466 Mdga1 protein_coding protein_coding MGP_CASTEiJ_T0046467.1 MGP_CASTEiJ_G0022698.1 mouse_genomes_project 17 29030279 29067290 - MGP_CASTEiJ_P0046467 Mdga1 protein_coding protein_coding MGP_CASTEiJ_T0046468.1 MGP_CASTEiJ_G0022698.1 mouse_genomes_project 17 29031158 29070992 - Mdga1 protein_coding processed_transcript MGP_CASTEiJ_T0012891.1 MGP_CASTEiJ_G0011054.1 mouse_genomes_project 17 57783844 57784109 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009899.1 MGP_CASTEiJ_G0008087.1 mouse_genomes_project 17 15585154 15585271 - Gm25927 miRNA miRNA MGP_CASTEiJ_T0048369.1 MGP_CASTEiJ_G0023241.1 mouse_genomes_project 17 81519650 81648824 + MGP_CASTEiJ_P0048369 Vit protein_coding protein_coding MGP_CASTEiJ_T0047109.1 MGP_CASTEiJ_G0022846.1 mouse_genomes_project 17 34981485 34993637 + MGP_CASTEiJ_P0047109 Bag6 protein_coding protein_coding MGP_CASTEiJ_T0047110.1 MGP_CASTEiJ_G0022846.1 mouse_genomes_project 17 34981485 34993620 + MGP_CASTEiJ_P0047110 Bag6 protein_coding protein_coding MGP_CASTEiJ_T0047111.1 MGP_CASTEiJ_G0022846.1 mouse_genomes_project 17 34981512 34993621 + MGP_CASTEiJ_P0047111 Bag6 protein_coding protein_coding MGP_CASTEiJ_T0047112.1 MGP_CASTEiJ_G0022846.1 mouse_genomes_project 17 34981535 34986621 + MGP_CASTEiJ_P0047112 Bag6 protein_coding protein_coding MGP_CASTEiJ_T0047113.1 MGP_CASTEiJ_G0022846.1 mouse_genomes_project 17 34981793 34988910 + MGP_CASTEiJ_P0047113 Bag6 protein_coding protein_coding MGP_CASTEiJ_T0047114.1 MGP_CASTEiJ_G0022846.1 mouse_genomes_project 17 34981817 34986684 + MGP_CASTEiJ_P0047114 Bag6 protein_coding protein_coding MGP_CASTEiJ_T0047115.1 MGP_CASTEiJ_G0022846.1 mouse_genomes_project 17 34982023 34985017 + MGP_CASTEiJ_P0047115 Bag6 protein_coding protein_coding MGP_CASTEiJ_T0047116.1 MGP_CASTEiJ_G0022846.1 mouse_genomes_project 17 34982035 34992664 + MGP_CASTEiJ_P0047116 Bag6 protein_coding protein_coding MGP_CASTEiJ_T0047117.1 MGP_CASTEiJ_G0022846.1 mouse_genomes_project 17 34982049 34993635 + MGP_CASTEiJ_P0047117 Bag6 protein_coding protein_coding MGP_CASTEiJ_T0047118.1 MGP_CASTEiJ_G0022846.1 mouse_genomes_project 17 34982428 34985277 + Bag6 protein_coding retained_intron MGP_CASTEiJ_T0047119.1 MGP_CASTEiJ_G0022846.1 mouse_genomes_project 17 34984884 34986162 + Bag6 protein_coding retained_intron MGP_CASTEiJ_T0047120.1 MGP_CASTEiJ_G0022846.1 mouse_genomes_project 17 34986542 34987706 + Bag6 protein_coding retained_intron MGP_CASTEiJ_T0047121.1 MGP_CASTEiJ_G0022846.1 mouse_genomes_project 17 34987470 34988301 + Bag6 protein_coding retained_intron MGP_CASTEiJ_T0047122.1 MGP_CASTEiJ_G0022846.1 mouse_genomes_project 17 34988291 34988917 + Bag6 protein_coding retained_intron MGP_CASTEiJ_T0047123.1 MGP_CASTEiJ_G0022846.1 mouse_genomes_project 17 34992202 34993634 + MGP_CASTEiJ_P0047123 Bag6 protein_coding protein_coding MGP_CASTEiJ_T0047124.1 MGP_CASTEiJ_G0022846.1 mouse_genomes_project 17 34992691 34993611 + Bag6 protein_coding retained_intron MGP_CASTEiJ_T0006806.1 MGP_CASTEiJ_G0005614.1 mouse_genomes_project 17 86321283 86323011 + Gm29052 lincRNA lincRNA MGP_CASTEiJ_T0045999.1 MGP_CASTEiJ_G0022597.1 mouse_genomes_project 17 24571066 24576167 + MGP_CASTEiJ_P0045999 Wdr24 protein_coding protein_coding MGP_CASTEiJ_T0046000.1 MGP_CASTEiJ_G0022597.1 mouse_genomes_project 17 24571088 24576158 + Wdr24 protein_coding retained_intron MGP_CASTEiJ_T0046001.1 MGP_CASTEiJ_G0022597.1 mouse_genomes_project 17 24571969 24573107 + Wdr24 protein_coding processed_transcript MGP_CASTEiJ_T0046002.1 MGP_CASTEiJ_G0022597.1 mouse_genomes_project 17 24572101 24573780 + Wdr24 protein_coding retained_intron MGP_CASTEiJ_T0046758.1 MGP_CASTEiJ_G0022773.1 mouse_genomes_project 17 33546245 33550472 - MGP_CASTEiJ_P0046758 Pfdn6 protein_coding protein_coding MGP_CASTEiJ_T0046759.1 MGP_CASTEiJ_G0022773.1 mouse_genomes_project 17 33546334 33550459 - MGP_CASTEiJ_P0046759 Pfdn6 protein_coding protein_coding MGP_CASTEiJ_T0046760.1 MGP_CASTEiJ_G0022773.1 mouse_genomes_project 17 33546343 33550454 - MGP_CASTEiJ_P0046760 Pfdn6 protein_coding protein_coding MGP_CASTEiJ_T0046761.1 MGP_CASTEiJ_G0022773.1 mouse_genomes_project 17 33546347 33550433 - MGP_CASTEiJ_P0046761 Pfdn6 protein_coding protein_coding MGP_CASTEiJ_T0046762.1 MGP_CASTEiJ_G0022773.1 mouse_genomes_project 17 33546370 33550459 - MGP_CASTEiJ_P0046762 Pfdn6 protein_coding protein_coding MGP_CASTEiJ_T0046763.1 MGP_CASTEiJ_G0022773.1 mouse_genomes_project 17 33549486 33549948 - Pfdn6 protein_coding retained_intron MGP_CASTEiJ_T0047384.1 MGP_CASTEiJ_G0022904.1 mouse_genomes_project 17 37246728 37251927 - H2-M5 protein_coding retained_intron MGP_CASTEiJ_T0047385.1 MGP_CASTEiJ_G0022904.1 mouse_genomes_project 17 37249255 37251894 - MGP_CASTEiJ_P0047385 H2-M5 protein_coding protein_coding MGP_CASTEiJ_T0047386.1 MGP_CASTEiJ_G0022904.1 mouse_genomes_project 17 37249515 37251588 - MGP_CASTEiJ_P0047386 H2-M5 protein_coding protein_coding MGP_CASTEiJ_T0047387.1 MGP_CASTEiJ_G0022904.1 mouse_genomes_project 17 37249515 37251588 - MGP_CASTEiJ_P0047387 H2-M5 protein_coding protein_coding MGP_CASTEiJ_T0047388.1 MGP_CASTEiJ_G0022904.1 mouse_genomes_project 17 37249897 37251445 - MGP_CASTEiJ_P0047388 H2-M5 protein_coding protein_coding MGP_CASTEiJ_T0045896.1 MGP_CASTEiJ_G0022568.1 mouse_genomes_project 17 23866694 23869808 + MGP_CASTEiJ_P0045896 BC003965 protein_coding protein_coding MGP_CASTEiJ_T0046810.1 MGP_CASTEiJ_G0022782.1 mouse_genomes_project 17 33754551 33757443 + MGP_CASTEiJ_P0046810 H2-Oa protein_coding protein_coding MGP_CASTEiJ_T0046811.1 MGP_CASTEiJ_G0022782.1 mouse_genomes_project 17 33754633 33757442 + H2-Oa protein_coding retained_intron MGP_CASTEiJ_T0045978.1 MGP_CASTEiJ_G0022590.1 mouse_genomes_project 17 24488319 24494053 - MGP_CASTEiJ_P0045978 Msln protein_coding protein_coding MGP_CASTEiJ_T0006801.1 MGP_CASTEiJ_G0005609.1 mouse_genomes_project 17 73416853 73959795 + lincRNA lincRNA MGP_CASTEiJ_T0006740.1 MGP_CASTEiJ_G0005567.1 mouse_genomes_project 17 27581814 27582582 - Gm20109 lincRNA lincRNA MGP_CASTEiJ_T0099520.1 MGP_CASTEiJ_G0036433.1 mouse_genomes_project 17 12468647 12468710 - Gm23352 snRNA snRNA MGP_CASTEiJ_T0047812.1 MGP_CASTEiJ_G0023063.1 mouse_genomes_project 17 48939246 48948790 + MGP_CASTEiJ_P0047812 Pgc protein_coding protein_coding MGP_CASTEiJ_T0047813.1 MGP_CASTEiJ_G0023063.1 mouse_genomes_project 17 48939248 48946696 + MGP_CASTEiJ_P0047813 Pgc protein_coding protein_coding MGP_CASTEiJ_T0012914.1 MGP_CASTEiJ_G0011077.1 mouse_genomes_project 17 95578464 95579692 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046205.1 MGP_CASTEiJ_G0022643.1 mouse_genomes_project 17 26083435 26099479 - MGP_CASTEiJ_P0046205 Lemd2 protein_coding protein_coding MGP_CASTEiJ_T0045350.1 MGP_CASTEiJ_G0022390.1 mouse_genomes_project 17 9998763 10040551 + MGP_CASTEiJ_P0045350 Plg protein_coding protein_coding MGP_CASTEiJ_T0048097.1 MGP_CASTEiJ_G0023160.1 mouse_genomes_project 17 58967318 58981352 - MGP_CASTEiJ_P0048097 protein_coding protein_coding MGP_CASTEiJ_T0102172.1 MGP_CASTEiJ_G0038897.1 mouse_genomes_project 17 37230019 37232206 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045873.1 MGP_CASTEiJ_G0022564.1 mouse_genomes_project 17 23775841 23792342 - Telo2 protein_coding retained_intron MGP_CASTEiJ_T0045874.1 MGP_CASTEiJ_G0022564.1 mouse_genomes_project 17 23775841 23792402 - MGP_CASTEiJ_P0045874 Telo2 protein_coding protein_coding MGP_CASTEiJ_T0045875.1 MGP_CASTEiJ_G0022564.1 mouse_genomes_project 17 23775848 23792340 - MGP_CASTEiJ_P0045875 Telo2 protein_coding protein_coding MGP_CASTEiJ_T0045876.1 MGP_CASTEiJ_G0022564.1 mouse_genomes_project 17 23775888 23779925 - Telo2 protein_coding processed_transcript MGP_CASTEiJ_T0045877.1 MGP_CASTEiJ_G0022564.1 mouse_genomes_project 17 23775896 23783100 - Telo2 protein_coding processed_transcript MGP_CASTEiJ_T0045878.1 MGP_CASTEiJ_G0022564.1 mouse_genomes_project 17 23776096 23777708 - Telo2 protein_coding processed_transcript MGP_CASTEiJ_T0045879.1 MGP_CASTEiJ_G0022564.1 mouse_genomes_project 17 23777038 23784403 - Telo2 protein_coding retained_intron MGP_CASTEiJ_T0045880.1 MGP_CASTEiJ_G0022564.1 mouse_genomes_project 17 23787074 23791627 - Telo2 protein_coding processed_transcript MGP_CASTEiJ_T0045881.1 MGP_CASTEiJ_G0022564.1 mouse_genomes_project 17 23787364 23790085 - Telo2 protein_coding processed_transcript MGP_CASTEiJ_T0045882.1 MGP_CASTEiJ_G0022564.1 mouse_genomes_project 17 23789638 23791747 - Telo2 protein_coding processed_transcript MGP_CASTEiJ_T0045883.1 MGP_CASTEiJ_G0022564.1 mouse_genomes_project 17 23790573 23792389 - Telo2 protein_coding retained_intron MGP_CASTEiJ_T0009909.1 MGP_CASTEiJ_G0008097.1 mouse_genomes_project 17 24486490 24486582 - Gm25083 miRNA miRNA MGP_CASTEiJ_T0009945.1 MGP_CASTEiJ_G0008133.1 mouse_genomes_project 17 59103414 59103473 - Mir6978 miRNA miRNA MGP_CASTEiJ_T0046474.1 MGP_CASTEiJ_G0022702.1 mouse_genomes_project 17 29886777 30227392 + MGP_CASTEiJ_P0046474 Dnah8 protein_coding protein_coding MGP_CASTEiJ_T0046475.1 MGP_CASTEiJ_G0022702.1 mouse_genomes_project 17 29895210 30201701 + MGP_CASTEiJ_P0046475 Dnah8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009947.1 MGP_CASTEiJ_G0008135.1 mouse_genomes_project 17 66539706 66539798 - Gm24194 miRNA miRNA MGP_CASTEiJ_T0012880.1 MGP_CASTEiJ_G0011043.1 mouse_genomes_project 17 55382062 55382715 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0047482.1 MGP_CASTEiJ_G0022967.1 mouse_genomes_project 17 41492140 41522723 - MGP_CASTEiJ_P0047482 Crisp2 protein_coding protein_coding MGP_CASTEiJ_T0047483.1 MGP_CASTEiJ_G0022967.1 mouse_genomes_project 17 41511071 41522754 - MGP_CASTEiJ_P0047483 Crisp2 protein_coding protein_coding MGP_CASTEiJ_T0047484.1 MGP_CASTEiJ_G0022967.1 mouse_genomes_project 17 41512752 41522684 - MGP_CASTEiJ_P0047484 Crisp2 protein_coding protein_coding MGP_CASTEiJ_T0047485.1 MGP_CASTEiJ_G0022967.1 mouse_genomes_project 17 41512828 41522675 - MGP_CASTEiJ_P0047485 Crisp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047486.1 MGP_CASTEiJ_G0022967.1 mouse_genomes_project 17 41521863 41530823 - Crisp2 protein_coding processed_transcript MGP_CASTEiJ_T0045301.1 MGP_CASTEiJ_G0022378.1 mouse_genomes_project 17 5744057 5760523 + protein_coding retained_intron MGP_CASTEiJ_T0045302.1 MGP_CASTEiJ_G0022378.1 mouse_genomes_project 17 5744064 5822828 + protein_coding processed_transcript MGP_CASTEiJ_T0045303.1 MGP_CASTEiJ_G0022378.1 mouse_genomes_project 17 5744077 5760145 + MGP_CASTEiJ_P0045303 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045304.1 MGP_CASTEiJ_G0022378.1 mouse_genomes_project 17 5744090 5761476 + MGP_CASTEiJ_P0045304 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045305.1 MGP_CASTEiJ_G0022378.1 mouse_genomes_project 17 5744094 5760098 + protein_coding processed_transcript MGP_CASTEiJ_T0045306.1 MGP_CASTEiJ_G0022378.1 mouse_genomes_project 17 5744124 5760521 + MGP_CASTEiJ_P0045306 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045307.1 MGP_CASTEiJ_G0022378.1 mouse_genomes_project 17 5744130 5751258 + protein_coding retained_intron MGP_CASTEiJ_T0045308.1 MGP_CASTEiJ_G0022378.1 mouse_genomes_project 17 5751778 5757502 + protein_coding retained_intron MGP_CASTEiJ_T0045309.1 MGP_CASTEiJ_G0022378.1 mouse_genomes_project 17 5753608 5760152 + protein_coding retained_intron MGP_CASTEiJ_T0045310.1 MGP_CASTEiJ_G0022378.1 mouse_genomes_project 17 5757424 5760521 + protein_coding retained_intron MGP_CASTEiJ_T0048399.1 MGP_CASTEiJ_G0023253.1 mouse_genomes_project 17 82414011 82435160 - MGP_CASTEiJ_P0048399 Cdc42ep3 protein_coding protein_coding MGP_CASTEiJ_T0046893.1 MGP_CASTEiJ_G0022803.1 mouse_genomes_project 17 34370789 34372738 + MGP_CASTEiJ_P0046893 Gpsm3 protein_coding protein_coding MGP_CASTEiJ_T0046894.1 MGP_CASTEiJ_G0022803.1 mouse_genomes_project 17 34371075 34372738 + MGP_CASTEiJ_P0046894 Gpsm3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046895.1 MGP_CASTEiJ_G0022803.1 mouse_genomes_project 17 34371214 34372624 + MGP_CASTEiJ_P0046895 Gpsm3 protein_coding protein_coding MGP_CASTEiJ_T0012899.1 MGP_CASTEiJ_G0011062.1 mouse_genomes_project 17 75336699 75337640 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0047694.1 MGP_CASTEiJ_G0023024.1 mouse_genomes_project 17 47523026 47571852 - MGP_CASTEiJ_P0047694 Ttbk1 protein_coding protein_coding MGP_CASTEiJ_T0047695.1 MGP_CASTEiJ_G0023024.1 mouse_genomes_project 17 47541302 47571727 - MGP_CASTEiJ_P0047695 Ttbk1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003662.1 MGP_CASTEiJ_G0003300.1 mouse_genomes_project 17 73365622 73367010 + Gm20703 antisense antisense MGP_CASTEiJ_T0045504.1 MGP_CASTEiJ_G0022439.1 mouse_genomes_project 17 16006780 16044237 - MGP_CASTEiJ_P0045504 Vmn2r94 protein_coding protein_coding MGP_CASTEiJ_T0102140.1 MGP_CASTEiJ_G0038865.1 mouse_genomes_project 17 33509581 33509971 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0046616.1 MGP_CASTEiJ_G0022739.1 mouse_genomes_project 17 32414979 32422710 - MGP_CASTEiJ_P0046616 Zfp799 protein_coding protein_coding MGP_CASTEiJ_T0046617.1 MGP_CASTEiJ_G0022739.1 mouse_genomes_project 17 32416151 32430362 - MGP_CASTEiJ_P0046617 Zfp799 protein_coding protein_coding MGP_CASTEiJ_T0046618.1 MGP_CASTEiJ_G0022739.1 mouse_genomes_project 17 32421334 32430329 - MGP_CASTEiJ_P0046618 Zfp799 protein_coding protein_coding MGP_CASTEiJ_T0046619.1 MGP_CASTEiJ_G0022739.1 mouse_genomes_project 17 32421588 32430347 - MGP_CASTEiJ_P0046619 Zfp799 protein_coding protein_coding MGP_CASTEiJ_T0046620.1 MGP_CASTEiJ_G0022739.1 mouse_genomes_project 17 32421952 32430316 - MGP_CASTEiJ_P0046620 Zfp799 protein_coding protein_coding MGP_CASTEiJ_T0000946.1 MGP_CASTEiJ_G0000882.1 mouse_genomes_project 17 51706098 51707115 + TEC TEC MGP_CASTEiJ_T0046076.1 MGP_CASTEiJ_G0022610.1 mouse_genomes_project 17 24708713 24715311 - MGP_CASTEiJ_P0046076 A930017K11Rik protein_coding protein_coding MGP_CASTEiJ_T0046361.1 MGP_CASTEiJ_G0022676.1 mouse_genomes_project 17 27955589 27989063 + MGP_CASTEiJ_P0046361 Pnpla1 protein_coding protein_coding MGP_CASTEiJ_T0046362.1 MGP_CASTEiJ_G0022676.1 mouse_genomes_project 17 27955589 27989063 + MGP_CASTEiJ_P0046362 Pnpla1 protein_coding protein_coding MGP_CASTEiJ_T0045352.1 MGP_CASTEiJ_G0022392.1 mouse_genomes_project 17 10226941 10272506 + MGP_CASTEiJ_P0045352 Slc22a2 protein_coding protein_coding MGP_CASTEiJ_T0045792.1 MGP_CASTEiJ_G0022545.1 mouse_genomes_project 17 23379897 23383914 + MGP_CASTEiJ_P0045792 protein_coding protein_coding MGP_CASTEiJ_T0045793.1 MGP_CASTEiJ_G0022545.1 mouse_genomes_project 17 23383634 23384038 + protein_coding retained_intron MGP_CASTEiJ_T0046681.1 MGP_CASTEiJ_G0022761.1 mouse_genomes_project 17 33250247 33290715 - MGP_CASTEiJ_P0046681 Hnrnpm protein_coding protein_coding MGP_CASTEiJ_T0046682.1 MGP_CASTEiJ_G0022761.1 mouse_genomes_project 17 33250249 33289226 - MGP_CASTEiJ_P0046682 Hnrnpm protein_coding protein_coding MGP_CASTEiJ_T0046683.1 MGP_CASTEiJ_G0022761.1 mouse_genomes_project 17 33250250 33289222 - MGP_CASTEiJ_P0046683 Hnrnpm protein_coding protein_coding MGP_CASTEiJ_T0046684.1 MGP_CASTEiJ_G0022761.1 mouse_genomes_project 17 33250253 33264208 - MGP_CASTEiJ_P0046684 Hnrnpm protein_coding protein_coding MGP_CASTEiJ_T0046685.1 MGP_CASTEiJ_G0022761.1 mouse_genomes_project 17 33250253 33289222 - MGP_CASTEiJ_P0046685 Hnrnpm protein_coding protein_coding MGP_CASTEiJ_T0046686.1 MGP_CASTEiJ_G0022761.1 mouse_genomes_project 17 33250399 33289280 - MGP_CASTEiJ_P0046686 Hnrnpm protein_coding unknown_likely_coding MGP_CASTEiJ_T0046687.1 MGP_CASTEiJ_G0022761.1 mouse_genomes_project 17 33254276 33270368 - MGP_CASTEiJ_P0046687 Hnrnpm protein_coding protein_coding MGP_CASTEiJ_T0046688.1 MGP_CASTEiJ_G0022761.1 mouse_genomes_project 17 33272433 33289219 - Hnrnpm protein_coding retained_intron MGP_CASTEiJ_T0046689.1 MGP_CASTEiJ_G0022761.1 mouse_genomes_project 17 33280746 33289235 - Hnrnpm protein_coding retained_intron MGP_CASTEiJ_T0048079.1 MGP_CASTEiJ_G0023152.1 mouse_genomes_project 17 58855111 58855673 - MGP_CASTEiJ_P0048079 Pspn protein_coding protein_coding MGP_CASTEiJ_T0098745.1 MGP_CASTEiJ_G0035676.1 mouse_genomes_project 17 5472508 5472596 + Gm22416 scaRNA scaRNA MGP_CASTEiJ_T0047443.1 MGP_CASTEiJ_G0022933.1 mouse_genomes_project 17 38001709 38002471 + MGP_CASTEiJ_P0047443 protein_coding protein_coding MGP_CASTEiJ_T0012847.1 MGP_CASTEiJ_G0011010.1 mouse_genomes_project 17 33617266 33617528 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046175.1 MGP_CASTEiJ_G0022635.1 mouse_genomes_project 17 25804308 25805794 - MGP_CASTEiJ_P0046175 Cuta protein_coding protein_coding MGP_CASTEiJ_T0046176.1 MGP_CASTEiJ_G0022635.1 mouse_genomes_project 17 25804308 25805804 - MGP_CASTEiJ_P0046176 Cuta protein_coding protein_coding MGP_CASTEiJ_T0012858.1 MGP_CASTEiJ_G0011021.1 mouse_genomes_project 17 36354292 36354562 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099551.1 MGP_CASTEiJ_G0036464.1 mouse_genomes_project 17 90293956 90294066 - Gm22235 snRNA snRNA MGP_CASTEiJ_T0048176.1 MGP_CASTEiJ_G0023189.1 mouse_genomes_project 17 68369184 68396324 - MGP_CASTEiJ_P0048176 Ndufv2 protein_coding protein_coding MGP_CASTEiJ_T0048177.1 MGP_CASTEiJ_G0023189.1 mouse_genomes_project 17 68369822 68396352 - MGP_CASTEiJ_P0048177 Ndufv2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048178.1 MGP_CASTEiJ_G0023189.1 mouse_genomes_project 17 68369830 68396260 - MGP_CASTEiJ_P0048178 Ndufv2 protein_coding protein_coding MGP_CASTEiJ_T0048179.1 MGP_CASTEiJ_G0023189.1 mouse_genomes_project 17 68377163 68383375 - MGP_CASTEiJ_P0048179 Ndufv2 protein_coding protein_coding MGP_CASTEiJ_T0048180.1 MGP_CASTEiJ_G0023189.1 mouse_genomes_project 17 68377254 68396274 - MGP_CASTEiJ_P0048180 Ndufv2 protein_coding protein_coding MGP_CASTEiJ_T0102161.1 MGP_CASTEiJ_G0038886.1 mouse_genomes_project 17 36516273 36518382 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0047420.1 MGP_CASTEiJ_G0022913.1 mouse_genomes_project 17 37490847 37492149 - MGP_CASTEiJ_P0047420 Olfr94 protein_coding protein_coding MGP_CASTEiJ_T0048134.1 MGP_CASTEiJ_G0023177.1 mouse_genomes_project 17 66042818 66354147 + MGP_CASTEiJ_P0048134 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048135.1 MGP_CASTEiJ_G0023177.1 mouse_genomes_project 17 66122194 66351248 + MGP_CASTEiJ_P0048135 protein_coding protein_coding MGP_CASTEiJ_T0045417.1 MGP_CASTEiJ_G0022410.1 mouse_genomes_project 17 12498025 12609118 - MGP_CASTEiJ_P0045417 Wdr27 protein_coding protein_coding MGP_CASTEiJ_T0045418.1 MGP_CASTEiJ_G0022410.1 mouse_genomes_project 17 12541826 12609118 - MGP_CASTEiJ_P0045418 Wdr27 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045703.1 MGP_CASTEiJ_G0022522.1 mouse_genomes_project 17 22859970 22956873 - MGP_CASTEiJ_P0045703 Abca17 protein_coding protein_coding MGP_CASTEiJ_T0045704.1 MGP_CASTEiJ_G0022522.1 mouse_genomes_project 17 22859990 22953127 - MGP_CASTEiJ_P0045704 Abca17 protein_coding protein_coding MGP_CASTEiJ_T0099522.1 MGP_CASTEiJ_G0036435.1 mouse_genomes_project 17 22968248 22968355 - Gm25618 snRNA snRNA MGP_CASTEiJ_T0048412.1 MGP_CASTEiJ_G0023259.1 mouse_genomes_project 17 83280596 83343055 + MGP_CASTEiJ_P0048412 Galm protein_coding protein_coding MGP_CASTEiJ_T0048413.1 MGP_CASTEiJ_G0023259.1 mouse_genomes_project 17 83301173 83340577 + MGP_CASTEiJ_P0048413 Galm protein_coding protein_coding MGP_CASTEiJ_T0047937.1 MGP_CASTEiJ_G0023092.1 mouse_genomes_project 17 54264525 54668788 + MGP_CASTEiJ_P0047937 Kcnh8 protein_coding protein_coding MGP_CASTEiJ_T0047938.1 MGP_CASTEiJ_G0023092.1 mouse_genomes_project 17 54638283 54667973 + Kcnh8 protein_coding retained_intron MGP_CASTEiJ_T0046835.1 MGP_CASTEiJ_G0022788.1 mouse_genomes_project 17 33869503 33879050 + MGP_CASTEiJ_P0046835 Tap1 protein_coding protein_coding MGP_CASTEiJ_T0046836.1 MGP_CASTEiJ_G0022788.1 mouse_genomes_project 17 33869678 33874090 + Tap1 protein_coding retained_intron MGP_CASTEiJ_T0046837.1 MGP_CASTEiJ_G0022788.1 mouse_genomes_project 17 33869684 33879050 + Tap1 protein_coding retained_intron MGP_CASTEiJ_T0046838.1 MGP_CASTEiJ_G0022788.1 mouse_genomes_project 17 33869752 33879044 + MGP_CASTEiJ_P0046838 Tap1 protein_coding protein_coding MGP_CASTEiJ_T0046839.1 MGP_CASTEiJ_G0022788.1 mouse_genomes_project 17 33871700 33879045 + Tap1 protein_coding retained_intron MGP_CASTEiJ_T0046840.1 MGP_CASTEiJ_G0022788.1 mouse_genomes_project 17 33872560 33875395 + MGP_CASTEiJ_P0046840 Tap1 protein_coding protein_coding MGP_CASTEiJ_T0046841.1 MGP_CASTEiJ_G0022788.1 mouse_genomes_project 17 33874859 33878412 + Tap1 protein_coding retained_intron MGP_CASTEiJ_T0047763.1 MGP_CASTEiJ_G0023049.1 mouse_genomes_project 17 48567924 48568302 + MGP_CASTEiJ_P0047763 Gm5814 protein_coding protein_coding MGP_CASTEiJ_T0048327.1 MGP_CASTEiJ_G0023232.1 mouse_genomes_project 17 77200549 77238973 - MGP_CASTEiJ_P0048327 Nlrc4 protein_coding protein_coding MGP_CASTEiJ_T0046347.1 MGP_CASTEiJ_G0022674.1 mouse_genomes_project 17 27852360 27862638 + MGP_CASTEiJ_P0046347 Mapk13 protein_coding protein_coding MGP_CASTEiJ_T0046348.1 MGP_CASTEiJ_G0022674.1 mouse_genomes_project 17 27852389 27862158 + Mapk13 protein_coding retained_intron MGP_CASTEiJ_T0046349.1 MGP_CASTEiJ_G0022674.1 mouse_genomes_project 17 27852402 27862486 + MGP_CASTEiJ_P0046349 Mapk13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046350.1 MGP_CASTEiJ_G0022674.1 mouse_genomes_project 17 27852425 27861613 + Mapk13 protein_coding retained_intron MGP_CASTEiJ_T0006750.1 MGP_CASTEiJ_G0005573.1 mouse_genomes_project 17 28596450 28640098 - Gm26885 lincRNA lincRNA MGP_CASTEiJ_T0006735.1 MGP_CASTEiJ_G0005562.1 mouse_genomes_project 17 25724509 25753529 - Gm17382 lincRNA lincRNA MGP_CASTEiJ_T0048305.1 MGP_CASTEiJ_G0023219.1 mouse_genomes_project 17 74485906 75247414 - MGP_CASTEiJ_P0048305 Alk protein_coding protein_coding MGP_CASTEiJ_T0048306.1 MGP_CASTEiJ_G0023219.1 mouse_genomes_project 17 74493022 74591522 - MGP_CASTEiJ_P0048306 Alk protein_coding unknown_likely_coding MGP_CASTEiJ_T0047473.1 MGP_CASTEiJ_G0022958.1 mouse_genomes_project 17 39896178 39897245 + MGP_CASTEiJ_P0047473 Esp38 protein_coding protein_coding MGP_CASTEiJ_T0100764.1 MGP_CASTEiJ_G0037677.1 mouse_genomes_project 17 35107428 35107505 + Gm22589 snoRNA snoRNA MGP_CASTEiJ_T0047368.1 MGP_CASTEiJ_G0022898.1 mouse_genomes_project 17 37154244 37168382 + MGP_CASTEiJ_P0047368 Trim31 protein_coding protein_coding MGP_CASTEiJ_T0003622.1 MGP_CASTEiJ_G0003271.1 mouse_genomes_project 17 32408642 32422207 + Gm26693 antisense antisense MGP_CASTEiJ_T0047450.1 MGP_CASTEiJ_G0022940.1 mouse_genomes_project 17 38218192 38231903 + MGP_CASTEiJ_P0047450 protein_coding protein_coding MGP_CASTEiJ_T0006738.1 MGP_CASTEiJ_G0005565.1 mouse_genomes_project 17 26261861 26264227 + Gm10505 lincRNA lincRNA MGP_CASTEiJ_T0046690.1 MGP_CASTEiJ_G0022762.1 mouse_genomes_project 17 33289525 33331422 - MGP_CASTEiJ_P0046690 March2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046691.1 MGP_CASTEiJ_G0022762.1 mouse_genomes_project 17 33289545 33331397 - MGP_CASTEiJ_P0046691 March2 protein_coding protein_coding MGP_CASTEiJ_T0046692.1 MGP_CASTEiJ_G0022762.1 mouse_genomes_project 17 33289646 33331397 - MGP_CASTEiJ_P0046692 March2 protein_coding protein_coding MGP_CASTEiJ_T0046693.1 MGP_CASTEiJ_G0022762.1 mouse_genomes_project 17 33299810 33331405 - MGP_CASTEiJ_P0046693 March2 protein_coding protein_coding MGP_CASTEiJ_T0046694.1 MGP_CASTEiJ_G0022762.1 mouse_genomes_project 17 33299810 33331392 - MGP_CASTEiJ_P0046694 March2 protein_coding protein_coding MGP_CASTEiJ_T0046695.1 MGP_CASTEiJ_G0022762.1 mouse_genomes_project 17 33300134 33311270 - MGP_CASTEiJ_P0046695 March2 protein_coding protein_coding MGP_CASTEiJ_T0046696.1 MGP_CASTEiJ_G0022762.1 mouse_genomes_project 17 33302498 33331409 - MGP_CASTEiJ_P0046696 March2 protein_coding protein_coding MGP_CASTEiJ_T0046697.1 MGP_CASTEiJ_G0022762.1 mouse_genomes_project 17 33304306 33331343 - MGP_CASTEiJ_P0046697 March2 protein_coding protein_coding MGP_CASTEiJ_T0046698.1 MGP_CASTEiJ_G0022762.1 mouse_genomes_project 17 33311207 33324037 - MGP_CASTEiJ_P0046698 March2 protein_coding protein_coding MGP_CASTEiJ_T0016794.1 MGP_CASTEiJ_G0014648.1 mouse_genomes_project 17 5798974 5851867 + T2 processed_transcript processed_transcript MGP_CASTEiJ_T0016795.1 MGP_CASTEiJ_G0014648.1 mouse_genomes_project 17 5822604 5851867 + T2 processed_transcript processed_transcript MGP_CASTEiJ_T0016811.1 MGP_CASTEiJ_G0014655.1 mouse_genomes_project 17 24296736 24300908 + 2810468N07Rik processed_transcript processed_transcript MGP_CASTEiJ_T0009941.1 MGP_CASTEiJ_G0008129.1 mouse_genomes_project 17 50505180 50505325 - Gm44304 miRNA miRNA MGP_CASTEiJ_T0045769.1 MGP_CASTEiJ_G0022537.1 mouse_genomes_project 17 23286702 23299121 - MGP_CASTEiJ_P0045769 Slc9a3r2 protein_coding protein_coding MGP_CASTEiJ_T0045770.1 MGP_CASTEiJ_G0022537.1 mouse_genomes_project 17 23286702 23292310 - MGP_CASTEiJ_P0045770 Slc9a3r2 protein_coding protein_coding MGP_CASTEiJ_T0102112.1 MGP_CASTEiJ_G0038837.1 mouse_genomes_project 17 16020708 16022351 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045823.1 MGP_CASTEiJ_G0022556.1 mouse_genomes_project 17 23559072 23565552 - MGP_CASTEiJ_P0045823 Eme2 protein_coding protein_coding MGP_CASTEiJ_T0045824.1 MGP_CASTEiJ_G0022556.1 mouse_genomes_project 17 23562647 23565584 - MGP_CASTEiJ_P0045824 Eme2 protein_coding protein_coding MGP_CASTEiJ_T0045826.1 MGP_CASTEiJ_G0022556.1 mouse_genomes_project 17 23562650 23565556 - MGP_CASTEiJ_P0045826 Eme2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045827.1 MGP_CASTEiJ_G0022556.1 mouse_genomes_project 17 23562975 23565575 - Eme2 protein_coding retained_intron MGP_CASTEiJ_T0045828.1 MGP_CASTEiJ_G0022556.1 mouse_genomes_project 17 23563275 23564681 - Eme2 protein_coding retained_intron MGP_CASTEiJ_T0045829.1 MGP_CASTEiJ_G0022556.1 mouse_genomes_project 17 23563634 23565552 - Eme2 protein_coding retained_intron MGP_CASTEiJ_T0045830.1 MGP_CASTEiJ_G0022556.1 mouse_genomes_project 17 23563857 23565559 - Eme2 protein_coding retained_intron MGP_CASTEiJ_T0045831.1 MGP_CASTEiJ_G0022556.1 mouse_genomes_project 17 23564242 23565522 - Eme2 protein_coding retained_intron MGP_CASTEiJ_T0048508.1 MGP_CASTEiJ_G0023302.1 mouse_genomes_project 17 90634829 90637462 + Cript protein_coding retained_intron MGP_CASTEiJ_T0048509.1 MGP_CASTEiJ_G0023302.1 mouse_genomes_project 17 90634879 90643590 + MGP_CASTEiJ_P0048509 Cript protein_coding unknown_likely_coding MGP_CASTEiJ_T0045930.1 MGP_CASTEiJ_G0022576.1 mouse_genomes_project 17 24009745 24012996 + MGP_CASTEiJ_P0045930 Prss28 protein_coding protein_coding MGP_CASTEiJ_T0048096.1 MGP_CASTEiJ_G0023159.1 mouse_genomes_project 17 58953010 58963070 - MGP_CASTEiJ_P0048096 Tubb4a protein_coding protein_coding MGP_CASTEiJ_T0047186.1 MGP_CASTEiJ_G0022866.1 mouse_genomes_project 17 35723496 35734946 - MGP_CASTEiJ_P0047186 Vars2 protein_coding protein_coding MGP_CASTEiJ_T0047187.1 MGP_CASTEiJ_G0022866.1 mouse_genomes_project 17 35723517 35733629 - Vars2 protein_coding retained_intron MGP_CASTEiJ_T0047188.1 MGP_CASTEiJ_G0022866.1 mouse_genomes_project 17 35724252 35730851 - MGP_CASTEiJ_P0047188 Vars2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047189.1 MGP_CASTEiJ_G0022866.1 mouse_genomes_project 17 35724419 35730393 - MGP_CASTEiJ_P0047189 Vars2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047190.1 MGP_CASTEiJ_G0022866.1 mouse_genomes_project 17 35724489 35726279 - Vars2 protein_coding retained_intron MGP_CASTEiJ_T0047191.1 MGP_CASTEiJ_G0022866.1 mouse_genomes_project 17 35724605 35725380 - Vars2 protein_coding retained_intron MGP_CASTEiJ_T0047192.1 MGP_CASTEiJ_G0022866.1 mouse_genomes_project 17 35727418 35727913 - Vars2 protein_coding retained_intron MGP_CASTEiJ_T0047193.1 MGP_CASTEiJ_G0022866.1 mouse_genomes_project 17 35727550 35729830 - MGP_CASTEiJ_P0047193 Vars2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047194.1 MGP_CASTEiJ_G0022866.1 mouse_genomes_project 17 35727891 35729509 - Vars2 protein_coding retained_intron MGP_CASTEiJ_T0047195.1 MGP_CASTEiJ_G0022866.1 mouse_genomes_project 17 35731811 35734087 - Vars2 protein_coding retained_intron MGP_CASTEiJ_T0047196.1 MGP_CASTEiJ_G0022866.1 mouse_genomes_project 17 35733483 35734894 - Vars2 protein_coding retained_intron MGP_CASTEiJ_T0047197.1 MGP_CASTEiJ_G0022866.1 mouse_genomes_project 17 35733567 35734903 - MGP_CASTEiJ_P0047197 Vars2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047223.1 MGP_CASTEiJ_G0022870.1 mouse_genomes_project 17 35905388 35914945 + MGP_CASTEiJ_P0047223 Flot1 protein_coding protein_coding MGP_CASTEiJ_T0047224.1 MGP_CASTEiJ_G0022870.1 mouse_genomes_project 17 35905500 35914764 + MGP_CASTEiJ_P0047224 Flot1 protein_coding protein_coding MGP_CASTEiJ_T0047225.1 MGP_CASTEiJ_G0022870.1 mouse_genomes_project 17 35905535 35912169 + MGP_CASTEiJ_P0047225 Flot1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047226.1 MGP_CASTEiJ_G0022870.1 mouse_genomes_project 17 35905579 35906553 + Flot1 protein_coding retained_intron MGP_CASTEiJ_T0047227.1 MGP_CASTEiJ_G0022870.1 mouse_genomes_project 17 35905679 35907886 + MGP_CASTEiJ_P0047227 Flot1 protein_coding protein_coding MGP_CASTEiJ_T0047228.1 MGP_CASTEiJ_G0022870.1 mouse_genomes_project 17 35905702 35907898 + MGP_CASTEiJ_P0047228 Flot1 protein_coding protein_coding MGP_CASTEiJ_T0047229.1 MGP_CASTEiJ_G0022870.1 mouse_genomes_project 17 35905746 35907885 + MGP_CASTEiJ_P0047229 Flot1 protein_coding protein_coding MGP_CASTEiJ_T0047230.1 MGP_CASTEiJ_G0022870.1 mouse_genomes_project 17 35906150 35907083 + Flot1 protein_coding retained_intron MGP_CASTEiJ_T0047231.1 MGP_CASTEiJ_G0022870.1 mouse_genomes_project 17 35912230 35914780 + Flot1 protein_coding retained_intron MGP_CASTEiJ_T0047232.1 MGP_CASTEiJ_G0022870.1 mouse_genomes_project 17 35912641 35914794 + Flot1 protein_coding retained_intron MGP_CASTEiJ_T0047233.1 MGP_CASTEiJ_G0022870.1 mouse_genomes_project 17 35912780 35913612 + Flot1 protein_coding retained_intron MGP_CASTEiJ_T0047920.1 MGP_CASTEiJ_G0023088.1 mouse_genomes_project 17 51773926 51788128 - MGP_CASTEiJ_P0047920 Dazl protein_coding protein_coding MGP_CASTEiJ_T0045862.1 MGP_CASTEiJ_G0022561.1 mouse_genomes_project 17 23635657 23690821 - MGP_CASTEiJ_P0045862 Cramp1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0102120.1 MGP_CASTEiJ_G0038845.1 mouse_genomes_project 17 18284079 18291082 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0046011.1 MGP_CASTEiJ_G0022599.1 mouse_genomes_project 17 24578052 24580778 - MGP_CASTEiJ_P0046011 Stub1 protein_coding protein_coding MGP_CASTEiJ_T0102185.1 MGP_CASTEiJ_G0038910.1 mouse_genomes_project 17 38659691 38661404 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0048426.1 MGP_CASTEiJ_G0023267.1 mouse_genomes_project 17 83565408 83665031 - MGP_CASTEiJ_P0048426 Sos1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048427.1 MGP_CASTEiJ_G0023267.1 mouse_genomes_project 17 83574710 83665484 - MGP_CASTEiJ_P0048427 Sos1 protein_coding protein_coding MGP_CASTEiJ_T0045217.1 MGP_CASTEiJ_G0022349.1 mouse_genomes_project 17 380306 591021 + MGP_CASTEiJ_P0045217 Tiam2 protein_coding protein_coding MGP_CASTEiJ_T0045218.1 MGP_CASTEiJ_G0022349.1 mouse_genomes_project 17 462417 591021 + MGP_CASTEiJ_P0045218 Tiam2 protein_coding protein_coding MGP_CASTEiJ_T0045219.1 MGP_CASTEiJ_G0022349.1 mouse_genomes_project 17 550740 590352 + MGP_CASTEiJ_P0045219 Tiam2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012886.1 MGP_CASTEiJ_G0011049.1 mouse_genomes_project 17 55674888 55675605 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0047530.1 MGP_CASTEiJ_G0022989.1 mouse_genomes_project 17 45014904 45024432 - MGP_CASTEiJ_P0047530 Enpp4 protein_coding protein_coding MGP_CASTEiJ_T0047531.1 MGP_CASTEiJ_G0022989.1 mouse_genomes_project 17 45014912 45024387 - MGP_CASTEiJ_P0047531 Enpp4 protein_coding protein_coding MGP_CASTEiJ_T0011110.1 MGP_CASTEiJ_G0009298.1 mouse_genomes_project 17 89111949 89112221 + Gm27275 misc_RNA misc_RNA MGP_CASTEiJ_T0047750.1 MGP_CASTEiJ_G0023047.1 mouse_genomes_project 17 48166151 48166413 - MGP_CASTEiJ_P0047750 protein_coding protein_coding MGP_CASTEiJ_T0045493.1 MGP_CASTEiJ_G0022430.1 mouse_genomes_project 17 15638732 15646167 - MGP_CASTEiJ_P0045493 Fpr1 protein_coding protein_coding MGP_CASTEiJ_T0046112.1 MGP_CASTEiJ_G0022621.1 mouse_genomes_project 17 25005224 25014286 + Rgs11 protein_coding processed_transcript MGP_CASTEiJ_T0046113.1 MGP_CASTEiJ_G0022621.1 mouse_genomes_project 17 25005231 25014290 + MGP_CASTEiJ_P0046113 Rgs11 protein_coding protein_coding MGP_CASTEiJ_T0046114.1 MGP_CASTEiJ_G0022621.1 mouse_genomes_project 17 25005235 25014295 + MGP_CASTEiJ_P0046114 Rgs11 protein_coding protein_coding MGP_CASTEiJ_T0046115.1 MGP_CASTEiJ_G0022621.1 mouse_genomes_project 17 25005236 25006106 + Rgs11 protein_coding retained_intron MGP_CASTEiJ_T0046116.1 MGP_CASTEiJ_G0022621.1 mouse_genomes_project 17 25005238 25005909 + Rgs11 protein_coding retained_intron MGP_CASTEiJ_T0046117.1 MGP_CASTEiJ_G0022621.1 mouse_genomes_project 17 25005249 25014288 + Rgs11 protein_coding retained_intron MGP_CASTEiJ_T0046118.1 MGP_CASTEiJ_G0022621.1 mouse_genomes_project 17 25005253 25006248 + Rgs11 protein_coding retained_intron MGP_CASTEiJ_T0046119.1 MGP_CASTEiJ_G0022621.1 mouse_genomes_project 17 25005275 25009076 + Rgs11 protein_coding retained_intron MGP_CASTEiJ_T0046120.1 MGP_CASTEiJ_G0022621.1 mouse_genomes_project 17 25005285 25006370 + Rgs11 protein_coding retained_intron MGP_CASTEiJ_T0046121.1 MGP_CASTEiJ_G0022621.1 mouse_genomes_project 17 25009723 25014288 + Rgs11 protein_coding retained_intron MGP_CASTEiJ_T0046122.1 MGP_CASTEiJ_G0022621.1 mouse_genomes_project 17 25010112 25014286 + Rgs11 protein_coding retained_intron MGP_CASTEiJ_T0003605.1 MGP_CASTEiJ_G0003258.1 mouse_genomes_project 17 23381302 23381736 - Snhg9 antisense antisense MGP_CASTEiJ_T0048462.1 MGP_CASTEiJ_G0023281.1 mouse_genomes_project 17 87558121 87561262 - MGP_CASTEiJ_P0048462 Zfp36l2 protein_coding protein_coding MGP_CASTEiJ_T0045285.1 MGP_CASTEiJ_G0022372.1 mouse_genomes_project 17 5407183 5499235 - MGP_CASTEiJ_P0045285 protein_coding protein_coding MGP_CASTEiJ_T0048432.1 MGP_CASTEiJ_G0023270.1 mouse_genomes_project 17 84166390 84236793 + MGP_CASTEiJ_P0048432 Tmem178 protein_coding protein_coding MGP_CASTEiJ_T0047047.1 MGP_CASTEiJ_G0022831.1 mouse_genomes_project 17 34868307 34869950 - Sapcd1 protein_coding retained_intron MGP_CASTEiJ_T0047048.1 MGP_CASTEiJ_G0022831.1 mouse_genomes_project 17 34868307 34870205 - MGP_CASTEiJ_P0047048 Sapcd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047049.1 MGP_CASTEiJ_G0022831.1 mouse_genomes_project 17 34868325 34870307 - MGP_CASTEiJ_P0047049 Sapcd1 protein_coding protein_coding MGP_CASTEiJ_T0047050.1 MGP_CASTEiJ_G0022831.1 mouse_genomes_project 17 34868613 34870307 - MGP_CASTEiJ_P0047050 Sapcd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006744.1 MGP_CASTEiJ_G0005570.1 mouse_genomes_project 17 28133215 28134321 + Gm16195 lincRNA lincRNA MGP_CASTEiJ_T0047268.1 MGP_CASTEiJ_G0022877.1 mouse_genomes_project 17 35988014 36001666 - MGP_CASTEiJ_P0047268 Atat1 protein_coding protein_coding MGP_CASTEiJ_T0047269.1 MGP_CASTEiJ_G0022877.1 mouse_genomes_project 17 35988028 36001637 - MGP_CASTEiJ_P0047269 Atat1 protein_coding protein_coding MGP_CASTEiJ_T0047270.1 MGP_CASTEiJ_G0022877.1 mouse_genomes_project 17 35988031 36001648 - MGP_CASTEiJ_P0047270 Atat1 protein_coding protein_coding MGP_CASTEiJ_T0047271.1 MGP_CASTEiJ_G0022877.1 mouse_genomes_project 17 35988034 35989002 - Atat1 protein_coding retained_intron MGP_CASTEiJ_T0047272.1 MGP_CASTEiJ_G0022877.1 mouse_genomes_project 17 35988301 36000552 - MGP_CASTEiJ_P0047272 Atat1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047273.1 MGP_CASTEiJ_G0022877.1 mouse_genomes_project 17 35990229 36001636 - MGP_CASTEiJ_P0047273 Atat1 protein_coding protein_coding MGP_CASTEiJ_T0047274.1 MGP_CASTEiJ_G0022877.1 mouse_genomes_project 17 35990264 36001636 - MGP_CASTEiJ_P0047274 Atat1 protein_coding protein_coding MGP_CASTEiJ_T0047275.1 MGP_CASTEiJ_G0022877.1 mouse_genomes_project 17 35990905 35994736 - MGP_CASTEiJ_P0047275 Atat1 protein_coding protein_coding MGP_CASTEiJ_T0047276.1 MGP_CASTEiJ_G0022877.1 mouse_genomes_project 17 35992396 36001026 - Atat1 protein_coding retained_intron MGP_CASTEiJ_T0047277.1 MGP_CASTEiJ_G0022877.1 mouse_genomes_project 17 35992413 36001164 - Atat1 protein_coding processed_transcript MGP_CASTEiJ_T0047278.1 MGP_CASTEiJ_G0022877.1 mouse_genomes_project 17 35992417 36000630 - Atat1 protein_coding retained_intron MGP_CASTEiJ_T0047279.1 MGP_CASTEiJ_G0022877.1 mouse_genomes_project 17 35992450 36001217 - MGP_CASTEiJ_P0047279 Atat1 protein_coding protein_coding MGP_CASTEiJ_T0047280.1 MGP_CASTEiJ_G0022877.1 mouse_genomes_project 17 35993739 36001330 - Atat1 protein_coding retained_intron MGP_CASTEiJ_T0047281.1 MGP_CASTEiJ_G0022877.1 mouse_genomes_project 17 35999555 36001636 - Atat1 protein_coding processed_transcript MGP_CASTEiJ_T0047282.1 MGP_CASTEiJ_G0022877.1 mouse_genomes_project 17 36000174 36001622 - MGP_CASTEiJ_P0047282 Atat1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047283.1 MGP_CASTEiJ_G0022877.1 mouse_genomes_project 17 36000521 36001600 - Atat1 protein_coding retained_intron MGP_CASTEiJ_T0045816.1 MGP_CASTEiJ_G0022555.1 mouse_genomes_project 17 23557270 23562643 + MGP_CASTEiJ_P0045816 Spsb3 protein_coding protein_coding MGP_CASTEiJ_T0045817.1 MGP_CASTEiJ_G0022555.1 mouse_genomes_project 17 23557298 23561092 + MGP_CASTEiJ_P0045817 Spsb3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045818.1 MGP_CASTEiJ_G0022555.1 mouse_genomes_project 17 23557333 23562633 + MGP_CASTEiJ_P0045818 Spsb3 protein_coding protein_coding MGP_CASTEiJ_T0045819.1 MGP_CASTEiJ_G0022555.1 mouse_genomes_project 17 23557355 23562648 + Spsb3 protein_coding retained_intron MGP_CASTEiJ_T0045820.1 MGP_CASTEiJ_G0022555.1 mouse_genomes_project 17 23557745 23562645 + MGP_CASTEiJ_P0045820 Spsb3 protein_coding protein_coding MGP_CASTEiJ_T0045821.1 MGP_CASTEiJ_G0022555.1 mouse_genomes_project 17 23558370 23562199 + MGP_CASTEiJ_P0045821 Spsb3 protein_coding protein_coding MGP_CASTEiJ_T0045822.1 MGP_CASTEiJ_G0022555.1 mouse_genomes_project 17 23558442 23560936 + MGP_CASTEiJ_P0045822 Spsb3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047502.1 MGP_CASTEiJ_G0022977.1 mouse_genomes_project 17 43574737 43667033 - MGP_CASTEiJ_P0047502 Cd2ap protein_coding protein_coding MGP_CASTEiJ_T0045677.1 MGP_CASTEiJ_G0022517.1 mouse_genomes_project 17 22756607 22780058 - MGP_CASTEiJ_P0045677 Gm43796 protein_coding protein_coding MGP_CASTEiJ_T0006720.1 MGP_CASTEiJ_G0005549.1 mouse_genomes_project 17 12709884 12720417 + Gm28873 lincRNA lincRNA MGP_CASTEiJ_T0047331.1 MGP_CASTEiJ_G0022886.1 mouse_genomes_project 17 36349995 36351184 - MGP_CASTEiJ_P0047331 protein_coding protein_coding MGP_CASTEiJ_T0045501.1 MGP_CASTEiJ_G0022436.1 mouse_genomes_project 17 15916296 16510309 + MGP_CASTEiJ_P0045501 protein_coding protein_coding MGP_CASTEiJ_T0048363.1 MGP_CASTEiJ_G0023238.1 mouse_genomes_project 17 78380771 78396951 - MGP_CASTEiJ_P0048363 Fam98a protein_coding protein_coding MGP_CASTEiJ_T0048364.1 MGP_CASTEiJ_G0023238.1 mouse_genomes_project 17 78382716 78384260 - Fam98a protein_coding retained_intron MGP_CASTEiJ_T0048365.1 MGP_CASTEiJ_G0023238.1 mouse_genomes_project 17 78389693 78396801 - Fam98a protein_coding retained_intron MGP_CASTEiJ_T0016815.1 MGP_CASTEiJ_G0014659.1 mouse_genomes_project 17 33232458 33249720 + Gm20507 processed_transcript processed_transcript MGP_CASTEiJ_T0045516.1 MGP_CASTEiJ_G0022451.1 mouse_genomes_project 17 18496787 18497684 + MGP_CASTEiJ_P0045516 Vmn1r225 protein_coding protein_coding MGP_CASTEiJ_T0099518.1 MGP_CASTEiJ_G0036431.1 mouse_genomes_project 17 1808848 1808955 + Gm23186 snRNA snRNA MGP_CASTEiJ_T0006736.1 MGP_CASTEiJ_G0005563.1 mouse_genomes_project 17 25725549 25765368 + Gm20468 lincRNA lincRNA MGP_CASTEiJ_T0047458.1 MGP_CASTEiJ_G0022946.1 mouse_genomes_project 17 38488688 38489630 - MGP_CASTEiJ_P0047458 Olfr132 protein_coding protein_coding MGP_CASTEiJ_T0012848.1 MGP_CASTEiJ_G0011011.1 mouse_genomes_project 17 33734939 33737360 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016834.1 MGP_CASTEiJ_G0014666.1 mouse_genomes_project 17 48292579 48494625 + Trerf1 processed_transcript retained_intron MGP_CASTEiJ_T0016835.1 MGP_CASTEiJ_G0014666.1 mouse_genomes_project 17 48292609 48524495 + Trerf1 processed_transcript processed_transcript MGP_CASTEiJ_T0016836.1 MGP_CASTEiJ_G0014666.1 mouse_genomes_project 17 48292609 48528099 + Trerf1 processed_transcript processed_transcript MGP_CASTEiJ_T0016837.1 MGP_CASTEiJ_G0014666.1 mouse_genomes_project 17 48292883 48484164 + Trerf1 processed_transcript retained_intron MGP_CASTEiJ_T0016838.1 MGP_CASTEiJ_G0014666.1 mouse_genomes_project 17 48371262 48484164 + Trerf1 processed_transcript retained_intron MGP_CASTEiJ_T0016839.1 MGP_CASTEiJ_G0014666.1 mouse_genomes_project 17 48455846 48524500 + Trerf1 processed_transcript processed_transcript MGP_CASTEiJ_T0045281.1 MGP_CASTEiJ_G0022370.1 mouse_genomes_project 17 5175019 5208273 + MGP_CASTEiJ_P0045281 protein_coding protein_coding MGP_CASTEiJ_T0047065.1 MGP_CASTEiJ_G0022834.1 mouse_genomes_project 17 34902861 34905893 + MGP_CASTEiJ_P0047065 Ddah2 protein_coding protein_coding MGP_CASTEiJ_T0047066.1 MGP_CASTEiJ_G0022834.1 mouse_genomes_project 17 34903613 34904704 + MGP_CASTEiJ_P0047066 Ddah2 protein_coding protein_coding MGP_CASTEiJ_T0047067.1 MGP_CASTEiJ_G0022834.1 mouse_genomes_project 17 34904690 34905423 + Ddah2 protein_coding retained_intron MGP_CASTEiJ_T0009935.1 MGP_CASTEiJ_G0008123.1 mouse_genomes_project 17 35119179 35119296 + Mir8094 miRNA miRNA MGP_CASTEiJ_T0100759.1 MGP_CASTEiJ_G0037672.1 mouse_genomes_project 17 24007229 24007366 + Gm25921 snoRNA snoRNA MGP_CASTEiJ_T0102111.1 MGP_CASTEiJ_G0038836.1 mouse_genomes_project 17 15921002 16889073 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0003623.1 MGP_CASTEiJ_G0003272.1 mouse_genomes_project 17 33512232 33513260 - BC051226 antisense antisense MGP_CASTEiJ_T0003624.1 MGP_CASTEiJ_G0003272.1 mouse_genomes_project 17 33512235 33513229 - BC051226 antisense antisense MGP_CASTEiJ_T0003625.1 MGP_CASTEiJ_G0003272.1 mouse_genomes_project 17 33512344 33513368 - BC051226 antisense antisense MGP_CASTEiJ_T0048082.1 MGP_CASTEiJ_G0023155.1 mouse_genomes_project 17 58891533 58900792 - MGP_CASTEiJ_P0048082 Slc25a41 protein_coding protein_coding MGP_CASTEiJ_T0048083.1 MGP_CASTEiJ_G0023155.1 mouse_genomes_project 17 58891685 58900785 - MGP_CASTEiJ_P0048083 Slc25a41 protein_coding protein_coding MGP_CASTEiJ_T0048196.1 MGP_CASTEiJ_G0023193.1 mouse_genomes_project 17 68827600 68852573 - MGP_CASTEiJ_P0048196 Rab12 protein_coding protein_coding MGP_CASTEiJ_T0048197.1 MGP_CASTEiJ_G0023193.1 mouse_genomes_project 17 68830783 68833538 - Rab12 protein_coding retained_intron MGP_CASTEiJ_T0048198.1 MGP_CASTEiJ_G0023193.1 mouse_genomes_project 17 68833567 68852236 - Rab12 protein_coding processed_transcript MGP_CASTEiJ_T0048199.1 MGP_CASTEiJ_G0023193.1 mouse_genomes_project 17 68838778 68852569 - Rab12 protein_coding retained_intron MGP_CASTEiJ_T0047317.1 MGP_CASTEiJ_G0022883.1 mouse_genomes_project 17 36114488 36122321 - MGP_CASTEiJ_P0047317 H2-T24 protein_coding protein_coding MGP_CASTEiJ_T0047318.1 MGP_CASTEiJ_G0022883.1 mouse_genomes_project 17 36115062 36122286 - MGP_CASTEiJ_P0047318 H2-T24 protein_coding protein_coding MGP_CASTEiJ_T0011090.1 MGP_CASTEiJ_G0009278.1 mouse_genomes_project 17 27501374 27501662 + Gm22146 misc_RNA misc_RNA MGP_CASTEiJ_T0048491.1 MGP_CASTEiJ_G0023293.1 mouse_genomes_project 17 89190830 89194887 - MGP_CASTEiJ_P0048491 Six2 protein_coding protein_coding MGP_CASTEiJ_T0048492.1 MGP_CASTEiJ_G0023293.1 mouse_genomes_project 17 89190835 89194867 - MGP_CASTEiJ_P0048492 Six2 protein_coding protein_coding MGP_CASTEiJ_T0047886.1 MGP_CASTEiJ_G0023081.1 mouse_genomes_project 17 49805838 49810739 - Tspo2 protein_coding retained_intron MGP_CASTEiJ_T0047887.1 MGP_CASTEiJ_G0023081.1 mouse_genomes_project 17 49806319 49810769 - MGP_CASTEiJ_P0047887 Tspo2 protein_coding protein_coding MGP_CASTEiJ_T0047888.1 MGP_CASTEiJ_G0023081.1 mouse_genomes_project 17 49806403 49809288 - MGP_CASTEiJ_P0047888 Tspo2 protein_coding protein_coding MGP_CASTEiJ_T0047889.1 MGP_CASTEiJ_G0023081.1 mouse_genomes_project 17 49806452 49809285 - MGP_CASTEiJ_P0047889 Tspo2 protein_coding protein_coding MGP_CASTEiJ_T0047890.1 MGP_CASTEiJ_G0023081.1 mouse_genomes_project 17 49809150 49810764 - Tspo2 protein_coding processed_transcript MGP_CASTEiJ_T0012828.1 MGP_CASTEiJ_G0010991.1 mouse_genomes_project 17 6210526 6211083 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0047447.1 MGP_CASTEiJ_G0022937.1 mouse_genomes_project 17 38135647 38136769 + MGP_CASTEiJ_P0047447 Olfr124 protein_coding protein_coding MGP_CASTEiJ_T0045228.1 MGP_CASTEiJ_G0022354.1 mouse_genomes_project 17 2274901 2275651 - protein_coding processed_transcript MGP_CASTEiJ_T0009918.1 MGP_CASTEiJ_G0008106.1 mouse_genomes_project 17 26247641 26247717 + Mir7216 miRNA miRNA MGP_CASTEiJ_T0012885.1 MGP_CASTEiJ_G0011048.1 mouse_genomes_project 17 55665203 55666350 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006732.1 MGP_CASTEiJ_G0005559.1 mouse_genomes_project 17 22327423 22331130 + D930048G16Rik lincRNA lincRNA MGP_CASTEiJ_T0048450.1 MGP_CASTEiJ_G0023279.1 mouse_genomes_project 17 87014981 87110061 + MGP_CASTEiJ_P0048450 Mta3 protein_coding protein_coding MGP_CASTEiJ_T0048451.1 MGP_CASTEiJ_G0023279.1 mouse_genomes_project 17 87014981 87122582 + MGP_CASTEiJ_P0048451 Mta3 protein_coding protein_coding MGP_CASTEiJ_T0048452.1 MGP_CASTEiJ_G0023279.1 mouse_genomes_project 17 87014981 87110059 + MGP_CASTEiJ_P0048452 Mta3 protein_coding protein_coding MGP_CASTEiJ_T0048453.1 MGP_CASTEiJ_G0023279.1 mouse_genomes_project 17 87015002 87141977 + MGP_CASTEiJ_P0048453 Mta3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048454.1 MGP_CASTEiJ_G0023279.1 mouse_genomes_project 17 87015009 87132008 + MGP_CASTEiJ_P0048454 Mta3 protein_coding protein_coding MGP_CASTEiJ_T0048455.1 MGP_CASTEiJ_G0023279.1 mouse_genomes_project 17 87015011 87110067 + MGP_CASTEiJ_P0048455 Mta3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048456.1 MGP_CASTEiJ_G0023279.1 mouse_genomes_project 17 87015076 87144139 + MGP_CASTEiJ_P0048456 Mta3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048457.1 MGP_CASTEiJ_G0023279.1 mouse_genomes_project 17 87040419 87066889 + Mta3 protein_coding processed_transcript MGP_CASTEiJ_T0048458.1 MGP_CASTEiJ_G0023279.1 mouse_genomes_project 17 87068659 87117408 + MGP_CASTEiJ_P0048458 Mta3 protein_coding protein_coding MGP_CASTEiJ_T0048459.1 MGP_CASTEiJ_G0023279.1 mouse_genomes_project 17 87099721 87140677 + MGP_CASTEiJ_P0048459 Mta3 protein_coding protein_coding MGP_CASTEiJ_T0048460.1 MGP_CASTEiJ_G0023279.1 mouse_genomes_project 17 87112578 87121756 + Mta3 protein_coding processed_transcript MGP_CASTEiJ_T0100779.1 MGP_CASTEiJ_G0037692.1 mouse_genomes_project 17 86529366 86529501 + Gm24240 snoRNA snoRNA MGP_CASTEiJ_T0045582.1 MGP_CASTEiJ_G0022487.1 mouse_genomes_project 17 22072996 22081631 - MGP_CASTEiJ_P0045582 Zfp213 protein_coding protein_coding MGP_CASTEiJ_T0045659.1 MGP_CASTEiJ_G0022513.1 mouse_genomes_project 17 22622588 22630215 + MGP_CASTEiJ_P0045659 Prss27 protein_coding protein_coding MGP_CASTEiJ_T0099543.1 MGP_CASTEiJ_G0036456.1 mouse_genomes_project 17 68375855 68375962 + Gm23264 snRNA snRNA MGP_CASTEiJ_T0048106.1 MGP_CASTEiJ_G0023166.1 mouse_genomes_project 17 59137112 59151271 + MGP_CASTEiJ_P0048106 Trip10 protein_coding protein_coding MGP_CASTEiJ_T0048107.1 MGP_CASTEiJ_G0023166.1 mouse_genomes_project 17 59137209 59150722 + MGP_CASTEiJ_P0048107 Trip10 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047567.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46621347 46635545 - MGP_CASTEiJ_P0047567 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047568.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46621347 46628719 - MGP_CASTEiJ_P0047568 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047569.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46621349 46629809 - MGP_CASTEiJ_P0047569 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047570.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46621350 46632055 - MGP_CASTEiJ_P0047570 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047571.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46621350 46631722 - MGP_CASTEiJ_P0047571 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047572.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46621350 46631720 - MGP_CASTEiJ_P0047572 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047573.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46621690 46628644 - MGP_CASTEiJ_P0047573 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047574.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46621819 46628402 - MGP_CASTEiJ_P0047574 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047575.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46622366 46624887 - Slc29a1 protein_coding processed_transcript MGP_CASTEiJ_T0047576.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46624511 46631652 - MGP_CASTEiJ_P0047576 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047577.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46624512 46631752 - MGP_CASTEiJ_P0047577 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047578.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46624665 46628984 - Slc29a1 protein_coding retained_intron MGP_CASTEiJ_T0047579.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46625013 46626255 - Slc29a1 protein_coding retained_intron MGP_CASTEiJ_T0047580.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46625352 46631701 - Slc29a1 protein_coding retained_intron MGP_CASTEiJ_T0047581.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46625562 46631665 - Slc29a1 protein_coding retained_intron MGP_CASTEiJ_T0047582.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46625562 46635546 - MGP_CASTEiJ_P0047582 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047583.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46625662 46632004 - MGP_CASTEiJ_P0047583 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047584.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46625668 46629803 - MGP_CASTEiJ_P0047584 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047585.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46625842 46635548 - MGP_CASTEiJ_P0047585 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047586.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46625867 46631706 - MGP_CASTEiJ_P0047586 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047587.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46625917 46631652 - MGP_CASTEiJ_P0047587 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047588.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46626100 46631691 - MGP_CASTEiJ_P0047588 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047589.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46626166 46631693 - MGP_CASTEiJ_P0047589 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047590.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46626212 46632109 - MGP_CASTEiJ_P0047590 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0047591.1 MGP_CASTEiJ_G0023001.1 mouse_genomes_project 17 46626255 46633207 - MGP_CASTEiJ_P0047591 Slc29a1 protein_coding protein_coding MGP_CASTEiJ_T0045730.1 MGP_CASTEiJ_G0022531.1 mouse_genomes_project 17 23111257 23136399 + MGP_CASTEiJ_P0045730 Caskin1 protein_coding protein_coding MGP_CASTEiJ_T0045731.1 MGP_CASTEiJ_G0022531.1 mouse_genomes_project 17 23111403 23134766 + MGP_CASTEiJ_P0045731 Caskin1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0102175.1 MGP_CASTEiJ_G0038900.1 mouse_genomes_project 17 37550426 37551818 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0003618.1 MGP_CASTEiJ_G0003269.1 mouse_genomes_project 17 30541419 30550984 + Gm15318 antisense antisense MGP_CASTEiJ_T0003619.1 MGP_CASTEiJ_G0003269.1 mouse_genomes_project 17 30541419 30550149 + Gm15318 antisense antisense MGP_CASTEiJ_T0003620.1 MGP_CASTEiJ_G0003269.1 mouse_genomes_project 17 30541419 30551713 + Gm15318 antisense antisense MGP_CASTEiJ_T0047505.1 MGP_CASTEiJ_G0022979.1 mouse_genomes_project 17 44092307 44154842 + MGP_CASTEiJ_P0047505 Adgrf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099542.1 MGP_CASTEiJ_G0036455.1 mouse_genomes_project 17 61460506 61460613 - Gm23203 snRNA snRNA MGP_CASTEiJ_T0045269.1 MGP_CASTEiJ_G0022364.1 mouse_genomes_project 17 4089184 4136329 - MGP_CASTEiJ_P0045269 Ezr protein_coding protein_coding MGP_CASTEiJ_T0045270.1 MGP_CASTEiJ_G0022364.1 mouse_genomes_project 17 4089410 4136235 - MGP_CASTEiJ_P0045270 Ezr protein_coding unknown_likely_coding MGP_CASTEiJ_T0045271.1 MGP_CASTEiJ_G0022364.1 mouse_genomes_project 17 4091980 4093998 - Ezr protein_coding processed_transcript MGP_CASTEiJ_T0016813.1 MGP_CASTEiJ_G0014657.1 mouse_genomes_project 17 28703093 28833999 + Gm28052 processed_transcript processed_transcript MGP_CASTEiJ_T0012865.1 MGP_CASTEiJ_G0011028.1 mouse_genomes_project 17 38166040 38168659 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048471.1 MGP_CASTEiJ_G0023286.1 mouse_genomes_project 17 88105010 88127084 + MGP_CASTEiJ_P0048471 Abcg8 protein_coding protein_coding MGP_CASTEiJ_T0048472.1 MGP_CASTEiJ_G0023286.1 mouse_genomes_project 17 88105121 88127092 + MGP_CASTEiJ_P0048472 Abcg8 protein_coding protein_coding MGP_CASTEiJ_T0045357.1 MGP_CASTEiJ_G0022395.1 mouse_genomes_project 17 10498076 10529581 - MGP_CASTEiJ_P0045357 Mas1 protein_coding protein_coding MGP_CASTEiJ_T0045358.1 MGP_CASTEiJ_G0022395.1 mouse_genomes_project 17 10498112 10511145 - MGP_CASTEiJ_P0045358 Mas1 protein_coding protein_coding MGP_CASTEiJ_T0045359.1 MGP_CASTEiJ_G0022395.1 mouse_genomes_project 17 10498112 10505047 - MGP_CASTEiJ_P0045359 Mas1 protein_coding protein_coding MGP_CASTEiJ_T0045360.1 MGP_CASTEiJ_G0022395.1 mouse_genomes_project 17 10498112 10511025 - MGP_CASTEiJ_P0045360 Mas1 protein_coding protein_coding MGP_CASTEiJ_T0045361.1 MGP_CASTEiJ_G0022395.1 mouse_genomes_project 17 10498112 10511145 - MGP_CASTEiJ_P0045361 Mas1 protein_coding protein_coding MGP_CASTEiJ_T0045362.1 MGP_CASTEiJ_G0022395.1 mouse_genomes_project 17 10499201 10508604 - MGP_CASTEiJ_P0045362 Mas1 protein_coding protein_coding MGP_CASTEiJ_T0045363.1 MGP_CASTEiJ_G0022395.1 mouse_genomes_project 17 10499304 10508590 - MGP_CASTEiJ_P0045363 Mas1 protein_coding protein_coding MGP_CASTEiJ_T0045364.1 MGP_CASTEiJ_G0022395.1 mouse_genomes_project 17 10499315 10508604 - MGP_CASTEiJ_P0045364 Mas1 protein_coding protein_coding MGP_CASTEiJ_T0045365.1 MGP_CASTEiJ_G0022395.1 mouse_genomes_project 17 10499458 10513217 - MGP_CASTEiJ_P0045365 Mas1 protein_coding protein_coding MGP_CASTEiJ_T0012867.1 MGP_CASTEiJ_G0011030.1 mouse_genomes_project 17 38213606 38214264 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012895.1 MGP_CASTEiJ_G0011058.1 mouse_genomes_project 17 70801019 70801550 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048098.1 MGP_CASTEiJ_G0023161.1 mouse_genomes_project 17 58980794 58984117 + MGP_CASTEiJ_P0048098 Tnfsf9 protein_coding protein_coding MGP_CASTEiJ_T0006724.1 MGP_CASTEiJ_G0005553.1 mouse_genomes_project 17 15125048 15130368 - Gm26873 lincRNA lincRNA MGP_CASTEiJ_T0048568.1 MGP_CASTEiJ_G0023318.1 mouse_genomes_project 17 92517659 92572901 - MGP_CASTEiJ_P0048568 Lhcgr protein_coding protein_coding MGP_CASTEiJ_T0009938.1 MGP_CASTEiJ_G0008126.1 mouse_genomes_project 17 36056531 36056616 - Mir877 miRNA miRNA MGP_CASTEiJ_T0045287.1 MGP_CASTEiJ_G0022374.1 mouse_genomes_project 17 5514959 5551409 - MGP_CASTEiJ_P0045287 protein_coding protein_coding MGP_CASTEiJ_T0045288.1 MGP_CASTEiJ_G0022374.1 mouse_genomes_project 17 5528122 5551456 - MGP_CASTEiJ_P0045288 protein_coding protein_coding MGP_CASTEiJ_T0046432.1 MGP_CASTEiJ_G0022691.1 mouse_genomes_project 17 28670199 28670709 - MGP_CASTEiJ_P0046432 Gm17657 protein_coding protein_coding MGP_CASTEiJ_T0045319.1 MGP_CASTEiJ_G0022382.1 mouse_genomes_project 17 6001791 6002887 - protein_coding translated_processed_pseudogene MGP_CASTEiJ_T0045320.1 MGP_CASTEiJ_G0022382.1 mouse_genomes_project 17 6002338 6002806 - MGP_CASTEiJ_P0045320 protein_coding protein_coding MGP_CASTEiJ_T0047154.1 MGP_CASTEiJ_G0022856.1 mouse_genomes_project 17 35106494 35121347 + MGP_CASTEiJ_P0047154 Ddx39b protein_coding protein_coding MGP_CASTEiJ_T0047155.1 MGP_CASTEiJ_G0022856.1 mouse_genomes_project 17 35106526 35115937 + MGP_CASTEiJ_P0047155 Ddx39b protein_coding protein_coding MGP_CASTEiJ_T0047156.1 MGP_CASTEiJ_G0022856.1 mouse_genomes_project 17 35106553 35117780 + Ddx39b protein_coding retained_intron MGP_CASTEiJ_T0047157.1 MGP_CASTEiJ_G0022856.1 mouse_genomes_project 17 35106618 35121320 + MGP_CASTEiJ_P0047157 Ddx39b protein_coding protein_coding MGP_CASTEiJ_T0047158.1 MGP_CASTEiJ_G0022856.1 mouse_genomes_project 17 35106744 35107974 + Ddx39b protein_coding processed_transcript MGP_CASTEiJ_T0047159.1 MGP_CASTEiJ_G0022856.1 mouse_genomes_project 17 35107417 35121316 + MGP_CASTEiJ_P0047159 Ddx39b protein_coding protein_coding MGP_CASTEiJ_T0006753.1 MGP_CASTEiJ_G0005575.1 mouse_genomes_project 17 31595791 31624452 + Gm17276 lincRNA lincRNA MGP_CASTEiJ_T0098538.1 MGP_CASTEiJ_G0035469.1 mouse_genomes_project 17 32399582 32399693 - Gm25555 rRNA rRNA MGP_CASTEiJ_T0047438.1 MGP_CASTEiJ_G0022929.1 mouse_genomes_project 17 37863837 37923795 - MGP_CASTEiJ_P0047438 protein_coding protein_coding MGP_CASTEiJ_T0102147.1 MGP_CASTEiJ_G0038872.1 mouse_genomes_project 17 34312479 34320660 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0003665.1 MGP_CASTEiJ_G0003303.1 mouse_genomes_project 17 89114566 89116204 - Gm28528 antisense antisense MGP_CASTEiJ_T0048373.1 MGP_CASTEiJ_G0023244.1 mouse_genomes_project 17 81880375 81893080 + MGP_CASTEiJ_P0048373 Gpatch11 protein_coding protein_coding MGP_CASTEiJ_T0047730.1 MGP_CASTEiJ_G0023037.1 mouse_genomes_project 17 47841611 47842752 - Gnmt protein_coding retained_intron MGP_CASTEiJ_T0047731.1 MGP_CASTEiJ_G0023037.1 mouse_genomes_project 17 47841611 47846995 - MGP_CASTEiJ_P0047731 Gnmt protein_coding protein_coding MGP_CASTEiJ_T0006729.1 MGP_CASTEiJ_G0005558.1 mouse_genomes_project 17 22276162 22286138 + 9530082P21Rik lincRNA lincRNA MGP_CASTEiJ_T0006730.1 MGP_CASTEiJ_G0005558.1 mouse_genomes_project 17 22284461 22289298 + 9530082P21Rik lincRNA lincRNA MGP_CASTEiJ_T0006731.1 MGP_CASTEiJ_G0005558.1 mouse_genomes_project 17 22284562 22286430 + 9530082P21Rik lincRNA lincRNA MGP_CASTEiJ_T0012840.1 MGP_CASTEiJ_G0011003.1 mouse_genomes_project 17 20200620 20201068 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011112.1 MGP_CASTEiJ_G0009300.1 mouse_genomes_project 17 89114465 89114658 + Gm27427 misc_RNA misc_RNA MGP_CASTEiJ_T0046768.1 MGP_CASTEiJ_G0022776.1 mouse_genomes_project 17 33561939 33567793 - Rps18 protein_coding processed_transcript MGP_CASTEiJ_T0046769.1 MGP_CASTEiJ_G0022776.1 mouse_genomes_project 17 33561939 33562628 - Rps18 protein_coding retained_intron MGP_CASTEiJ_T0046770.1 MGP_CASTEiJ_G0022776.1 mouse_genomes_project 17 33561939 33568244 - MGP_CASTEiJ_P0046770 Rps18 protein_coding protein_coding MGP_CASTEiJ_T0046771.1 MGP_CASTEiJ_G0022776.1 mouse_genomes_project 17 33561939 33568298 - MGP_CASTEiJ_P0046771 Rps18 protein_coding protein_coding MGP_CASTEiJ_T0046772.1 MGP_CASTEiJ_G0022776.1 mouse_genomes_project 17 33561940 33567062 - Rps18 protein_coding processed_transcript MGP_CASTEiJ_T0046773.1 MGP_CASTEiJ_G0022776.1 mouse_genomes_project 17 33561940 33568241 - Rps18 protein_coding retained_intron MGP_CASTEiJ_T0046774.1 MGP_CASTEiJ_G0022776.1 mouse_genomes_project 17 33561944 33562480 - Rps18 protein_coding retained_intron MGP_CASTEiJ_T0046775.1 MGP_CASTEiJ_G0022776.1 mouse_genomes_project 17 33562209 33568234 - Rps18 protein_coding retained_intron MGP_CASTEiJ_T0046776.1 MGP_CASTEiJ_G0022776.1 mouse_genomes_project 17 33567405 33568241 - Rps18 protein_coding retained_intron MGP_CASTEiJ_T0046777.1 MGP_CASTEiJ_G0022776.1 mouse_genomes_project 17 33568099 33568582 - Rps18 protein_coding processed_transcript MGP_CASTEiJ_T0100758.1 MGP_CASTEiJ_G0037671.1 mouse_genomes_project 17 23382570 23382704 + Snora64 snoRNA snoRNA MGP_CASTEiJ_T0047372.1 MGP_CASTEiJ_G0022900.1 mouse_genomes_project 17 37208155 37211512 - MGP_CASTEiJ_P0047372 Ppp1r11 protein_coding protein_coding MGP_CASTEiJ_T0047373.1 MGP_CASTEiJ_G0022900.1 mouse_genomes_project 17 37209088 37211540 - MGP_CASTEiJ_P0047373 Ppp1r11 protein_coding protein_coding MGP_CASTEiJ_T0047374.1 MGP_CASTEiJ_G0022900.1 mouse_genomes_project 17 37209153 37211137 - MGP_CASTEiJ_P0047374 Ppp1r11 protein_coding protein_coding MGP_CASTEiJ_T0048466.1 MGP_CASTEiJ_G0023284.1 mouse_genomes_project 17 88040165 88071180 + MGP_CASTEiJ_P0048466 Dync2li1 protein_coding protein_coding MGP_CASTEiJ_T0009917.1 MGP_CASTEiJ_G0008105.1 mouse_genomes_project 17 26231776 26231837 - Mir7214 miRNA miRNA MGP_CASTEiJ_T0045897.1 MGP_CASTEiJ_G0022569.1 mouse_genomes_project 17 23870543 23921254 + MGP_CASTEiJ_P0045897 protein_coding protein_coding MGP_CASTEiJ_T0045898.1 MGP_CASTEiJ_G0022569.1 mouse_genomes_project 17 23871066 23921254 + MGP_CASTEiJ_P0045898 protein_coding protein_coding MGP_CASTEiJ_T0045899.1 MGP_CASTEiJ_G0022569.1 mouse_genomes_project 17 23871607 23889181 + MGP_CASTEiJ_P0045899 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045900.1 MGP_CASTEiJ_G0022569.1 mouse_genomes_project 17 23894077 23896745 + protein_coding retained_intron MGP_CASTEiJ_T0045901.1 MGP_CASTEiJ_G0022569.1 mouse_genomes_project 17 23907133 23914036 + MGP_CASTEiJ_P0045901 protein_coding protein_coding MGP_CASTEiJ_T0045902.1 MGP_CASTEiJ_G0022569.1 mouse_genomes_project 17 23907176 23921253 + MGP_CASTEiJ_P0045902 protein_coding protein_coding MGP_CASTEiJ_T0045904.1 MGP_CASTEiJ_G0022569.1 mouse_genomes_project 17 23907373 23918598 + MGP_CASTEiJ_P0045904 protein_coding protein_coding MGP_CASTEiJ_T0045289.1 MGP_CASTEiJ_G0022375.1 mouse_genomes_project 17 5528141 5551721 - MGP_CASTEiJ_P0045289 protein_coding protein_coding MGP_CASTEiJ_T0045547.1 MGP_CASTEiJ_G0022473.1 mouse_genomes_project 17 19860068 19879101 + MGP_CASTEiJ_P0045547 Zfp760 protein_coding protein_coding MGP_CASTEiJ_T0045717.1 MGP_CASTEiJ_G0022526.1 mouse_genomes_project 17 23056760 23058844 - Dnase1l2 protein_coding retained_intron MGP_CASTEiJ_T0045718.1 MGP_CASTEiJ_G0022526.1 mouse_genomes_project 17 23056766 23059748 - MGP_CASTEiJ_P0045718 Dnase1l2 protein_coding protein_coding MGP_CASTEiJ_T0045719.1 MGP_CASTEiJ_G0022526.1 mouse_genomes_project 17 23057244 23059727 - MGP_CASTEiJ_P0045719 Dnase1l2 protein_coding protein_coding MGP_CASTEiJ_T0045720.1 MGP_CASTEiJ_G0022526.1 mouse_genomes_project 17 23057453 23058793 - MGP_CASTEiJ_P0045720 Dnase1l2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045721.1 MGP_CASTEiJ_G0022526.1 mouse_genomes_project 17 23058168 23059344 - MGP_CASTEiJ_P0045721 Dnase1l2 protein_coding protein_coding MGP_CASTEiJ_T0045722.1 MGP_CASTEiJ_G0022526.1 mouse_genomes_project 17 23058366 23059747 - MGP_CASTEiJ_P0045722 Dnase1l2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045766.1 MGP_CASTEiJ_G0022535.1 mouse_genomes_project 17 23237068 23280069 - MGP_CASTEiJ_P0045766 Tsc2 protein_coding protein_coding MGP_CASTEiJ_T0045767.1 MGP_CASTEiJ_G0022535.1 mouse_genomes_project 17 23242053 23280051 - MGP_CASTEiJ_P0045767 Tsc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0046916.1 MGP_CASTEiJ_G0022807.1 mouse_genomes_project 17 34385222 34392682 + MGP_CASTEiJ_P0046916 Agpat1 protein_coding protein_coding MGP_CASTEiJ_T0046917.1 MGP_CASTEiJ_G0022807.1 mouse_genomes_project 17 34385804 34392380 + MGP_CASTEiJ_P0046917 Agpat1 protein_coding protein_coding MGP_CASTEiJ_T0046918.1 MGP_CASTEiJ_G0022807.1 mouse_genomes_project 17 34386825 34394445 + MGP_CASTEiJ_P0046918 Agpat1 protein_coding protein_coding MGP_CASTEiJ_T0046919.1 MGP_CASTEiJ_G0022807.1 mouse_genomes_project 17 34386825 34393428 + MGP_CASTEiJ_P0046919 Agpat1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046920.1 MGP_CASTEiJ_G0022807.1 mouse_genomes_project 17 34386937 34393876 + MGP_CASTEiJ_P0046920 Agpat1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046921.1 MGP_CASTEiJ_G0022807.1 mouse_genomes_project 17 34389980 34394444 + MGP_CASTEiJ_P0046921 Agpat1 protein_coding protein_coding MGP_CASTEiJ_T0046922.1 MGP_CASTEiJ_G0022807.1 mouse_genomes_project 17 34390587 34394414 + MGP_CASTEiJ_P0046922 Agpat1 protein_coding protein_coding MGP_CASTEiJ_T0046923.1 MGP_CASTEiJ_G0022807.1 mouse_genomes_project 17 34391243 34392161 + Agpat1 protein_coding retained_intron MGP_CASTEiJ_T0016796.1 MGP_CASTEiJ_G0014649.1 mouse_genomes_project 17 8377290 8400606 + Gm16169 processed_transcript antisense MGP_CASTEiJ_T0016797.1 MGP_CASTEiJ_G0014649.1 mouse_genomes_project 17 8377295 8386164 + Gm16169 processed_transcript retained_intron MGP_CASTEiJ_T0047445.1 MGP_CASTEiJ_G0022935.1 mouse_genomes_project 17 38026832 38051136 + MGP_CASTEiJ_P0047445 protein_coding protein_coding MGP_CASTEiJ_T0047019.1 MGP_CASTEiJ_G0022826.1 mouse_genomes_project 17 34806467 34812304 - MGP_CASTEiJ_P0047019 Hspa1b protein_coding protein_coding MGP_CASTEiJ_T0047747.1 MGP_CASTEiJ_G0023046.1 mouse_genomes_project 17 48075136 48159768 - MGP_CASTEiJ_P0047747 Ubr2 protein_coding protein_coding MGP_CASTEiJ_T0047748.1 MGP_CASTEiJ_G0023046.1 mouse_genomes_project 17 48075136 48159768 - MGP_CASTEiJ_P0047748 Ubr2 protein_coding protein_coding MGP_CASTEiJ_T0047749.1 MGP_CASTEiJ_G0023046.1 mouse_genomes_project 17 48077170 48159455 - MGP_CASTEiJ_P0047749 Ubr2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003655.1 MGP_CASTEiJ_G0003295.1 mouse_genomes_project 17 54253526 54264477 - Gm27217 antisense antisense MGP_CASTEiJ_T0003611.1 MGP_CASTEiJ_G0003264.1 mouse_genomes_project 17 26991003 27011464 - Gm15598 antisense antisense MGP_CASTEiJ_T0047078.1 MGP_CASTEiJ_G0022838.1 mouse_genomes_project 17 34920615 34921985 + MGP_CASTEiJ_P0047078 Ly6g6e protein_coding protein_coding MGP_CASTEiJ_T0047079.1 MGP_CASTEiJ_G0022838.1 mouse_genomes_project 17 34920644 34922241 + MGP_CASTEiJ_P0047079 Ly6g6e protein_coding protein_coding MGP_CASTEiJ_T0047080.1 MGP_CASTEiJ_G0022838.1 mouse_genomes_project 17 34920650 34922491 + MGP_CASTEiJ_P0047080 Ly6g6e protein_coding protein_coding MGP_CASTEiJ_T0047081.1 MGP_CASTEiJ_G0022838.1 mouse_genomes_project 17 34920872 34921976 + MGP_CASTEiJ_P0047081 Ly6g6e protein_coding protein_coding MGP_CASTEiJ_T0047942.1 MGP_CASTEiJ_G0023096.1 mouse_genomes_project 17 55254416 55308546 + Kat2b protein_coding processed_transcript MGP_CASTEiJ_T0047943.1 MGP_CASTEiJ_G0023096.1 mouse_genomes_project 17 55254525 55356988 + MGP_CASTEiJ_P0047943 Kat2b protein_coding protein_coding MGP_CASTEiJ_T0047944.1 MGP_CASTEiJ_G0023096.1 mouse_genomes_project 17 55272092 55321064 + MGP_CASTEiJ_P0047944 Kat2b protein_coding protein_coding MGP_CASTEiJ_T0047945.1 MGP_CASTEiJ_G0023096.1 mouse_genomes_project 17 55329161 55356339 + MGP_CASTEiJ_P0047945 Kat2b protein_coding protein_coding MGP_CASTEiJ_T0047946.1 MGP_CASTEiJ_G0023096.1 mouse_genomes_project 17 55343469 55347880 + Kat2b protein_coding retained_intron MGP_CASTEiJ_T0047947.1 MGP_CASTEiJ_G0023096.1 mouse_genomes_project 17 55343542 55347905 + Kat2b protein_coding retained_intron MGP_CASTEiJ_T0047948.1 MGP_CASTEiJ_G0023096.1 mouse_genomes_project 17 55343626 55354957 + MGP_CASTEiJ_P0047948 Kat2b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047346.1 MGP_CASTEiJ_G0022891.1 mouse_genomes_project 17 36724817 36726988 + MGP_CASTEiJ_P0047346 H2-M11 protein_coding protein_coding MGP_CASTEiJ_T0048354.1 MGP_CASTEiJ_G0023235.1 mouse_genomes_project 17 77537359 77694057 + MGP_CASTEiJ_P0048354 Ttc27 protein_coding protein_coding MGP_CASTEiJ_T0011091.1 MGP_CASTEiJ_G0009279.1 mouse_genomes_project 17 28174312 28174481 + Gm27599 misc_RNA misc_RNA MGP_CASTEiJ_T0048296.1 MGP_CASTEiJ_G0023216.1 mouse_genomes_project 17 74270942 74284206 + Fam179a protein_coding processed_transcript MGP_CASTEiJ_T0048297.1 MGP_CASTEiJ_G0023216.1 mouse_genomes_project 17 74270942 74329323 + MGP_CASTEiJ_P0048297 Fam179a protein_coding protein_coding MGP_CASTEiJ_T0048298.1 MGP_CASTEiJ_G0023216.1 mouse_genomes_project 17 74270946 74288244 + Fam179a protein_coding processed_transcript MGP_CASTEiJ_T0048299.1 MGP_CASTEiJ_G0023216.1 mouse_genomes_project 17 74283821 74329323 + MGP_CASTEiJ_P0048299 Fam179a protein_coding protein_coding MGP_CASTEiJ_T0048300.1 MGP_CASTEiJ_G0023216.1 mouse_genomes_project 17 74285774 74329197 + MGP_CASTEiJ_P0048300 Fam179a protein_coding protein_coding MGP_CASTEiJ_T0048301.1 MGP_CASTEiJ_G0023216.1 mouse_genomes_project 17 74312802 74329323 + Fam179a protein_coding retained_intron MGP_CASTEiJ_T0048324.1 MGP_CASTEiJ_G0023230.1 mouse_genomes_project 17 77114868 77160269 + MGP_CASTEiJ_P0048324 Spast protein_coding protein_coding MGP_CASTEiJ_T0048022.1 MGP_CASTEiJ_G0023132.1 mouse_genomes_project 17 58329379 58330615 - MGP_CASTEiJ_P0048022 Znrf4 protein_coding protein_coding MGP_CASTEiJ_T0048113.1 MGP_CASTEiJ_G0023168.1 mouse_genomes_project 17 59257967 59387157 + MGP_CASTEiJ_P0048113 Adgre1 protein_coding protein_coding MGP_CASTEiJ_T0048114.1 MGP_CASTEiJ_G0023168.1 mouse_genomes_project 17 59257995 59387151 + MGP_CASTEiJ_P0048114 Adgre1 protein_coding protein_coding MGP_CASTEiJ_T0006778.1 MGP_CASTEiJ_G0005597.1 mouse_genomes_project 17 49170575 49171625 + Gm15556 lincRNA lincRNA MGP_CASTEiJ_T0047744.1 MGP_CASTEiJ_G0023045.1 mouse_genomes_project 17 48052443 48069999 + MGP_CASTEiJ_P0047744 Prph2 protein_coding protein_coding MGP_CASTEiJ_T0047745.1 MGP_CASTEiJ_G0023045.1 mouse_genomes_project 17 48052462 48065366 + Prph2 protein_coding retained_intron MGP_CASTEiJ_T0047746.1 MGP_CASTEiJ_G0023045.1 mouse_genomes_project 17 48052532 48079278 + MGP_CASTEiJ_P0047746 Prph2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045647.1 MGP_CASTEiJ_G0022507.1 mouse_genomes_project 17 22386683 22399791 + Prss32 protein_coding processed_transcript MGP_CASTEiJ_T0045648.1 MGP_CASTEiJ_G0022507.1 mouse_genomes_project 17 22398870 22405096 + MGP_CASTEiJ_P0045648 Prss32 protein_coding protein_coding MGP_CASTEiJ_T0045649.1 MGP_CASTEiJ_G0022507.1 mouse_genomes_project 17 22399113 22404656 + MGP_CASTEiJ_P0045649 Prss32 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012864.1 MGP_CASTEiJ_G0011027.1 mouse_genomes_project 17 37445480 37446077 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046044.1 MGP_CASTEiJ_G0022604.1 mouse_genomes_project 17 24612655 24617690 - MGP_CASTEiJ_P0046044 Fam195a protein_coding protein_coding MGP_CASTEiJ_T0045652.1 MGP_CASTEiJ_G0022510.1 mouse_genomes_project 17 22549860 22552960 - MGP_CASTEiJ_P0045652 Prss30 protein_coding protein_coding MGP_CASTEiJ_T0045653.1 MGP_CASTEiJ_G0022510.1 mouse_genomes_project 17 22550573 22552531 - MGP_CASTEiJ_P0045653 Prss30 protein_coding protein_coding MGP_CASTEiJ_T0045654.1 MGP_CASTEiJ_G0022510.1 mouse_genomes_project 17 22550800 22552904 - Prss30 protein_coding retained_intron MGP_CASTEiJ_T0045655.1 MGP_CASTEiJ_G0022510.1 mouse_genomes_project 17 22550824 22552413 - MGP_CASTEiJ_P0045655 Prss30 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045656.1 MGP_CASTEiJ_G0022510.1 mouse_genomes_project 17 22551400 22552928 - MGP_CASTEiJ_P0045656 Prss30 protein_coding protein_coding MGP_CASTEiJ_T0045234.1 MGP_CASTEiJ_G0022357.1 mouse_genomes_project 17 2670598 2946125 + MGP_CASTEiJ_P0045234 Zdhhc14 protein_coding protein_coding MGP_CASTEiJ_T0046952.1 MGP_CASTEiJ_G0022815.1 mouse_genomes_project 17 34661201 34662815 + MGP_CASTEiJ_P0046952 Dxo protein_coding protein_coding MGP_CASTEiJ_T0046953.1 MGP_CASTEiJ_G0022815.1 mouse_genomes_project 17 34661201 34663353 + MGP_CASTEiJ_P0046953 Dxo protein_coding protein_coding MGP_CASTEiJ_T0046954.1 MGP_CASTEiJ_G0022815.1 mouse_genomes_project 17 34661201 34663400 + MGP_CASTEiJ_P0046954 Dxo protein_coding protein_coding MGP_CASTEiJ_T0046955.1 MGP_CASTEiJ_G0022815.1 mouse_genomes_project 17 34661264 34662542 + Dxo protein_coding retained_intron MGP_CASTEiJ_T0046956.1 MGP_CASTEiJ_G0022815.1 mouse_genomes_project 17 34661430 34662160 + MGP_CASTEiJ_P0046956 Dxo protein_coding protein_coding MGP_CASTEiJ_T0046957.1 MGP_CASTEiJ_G0022815.1 mouse_genomes_project 17 34661581 34663304 + MGP_CASTEiJ_P0046957 Dxo protein_coding protein_coding MGP_CASTEiJ_T0046958.1 MGP_CASTEiJ_G0022815.1 mouse_genomes_project 17 34661839 34663305 + MGP_CASTEiJ_P0046958 Dxo protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046959.1 MGP_CASTEiJ_G0022815.1 mouse_genomes_project 17 34662175 34662850 + MGP_CASTEiJ_P0046959 Dxo protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046960.1 MGP_CASTEiJ_G0022815.1 mouse_genomes_project 17 34662477 34663304 + MGP_CASTEiJ_P0046960 Dxo protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046961.1 MGP_CASTEiJ_G0022815.1 mouse_genomes_project 17 34662506 34663304 + MGP_CASTEiJ_P0046961 Dxo protein_coding protein_coding MGP_CASTEiJ_T0046962.1 MGP_CASTEiJ_G0022815.1 mouse_genomes_project 17 34662626 34663290 + MGP_CASTEiJ_P0046962 Dxo protein_coding protein_coding MGP_CASTEiJ_T0046473.1 MGP_CASTEiJ_G0022701.1 mouse_genomes_project 17 29833251 29871225 - MGP_CASTEiJ_P0046473 Glo1 protein_coding protein_coding MGP_CASTEiJ_T0046013.1 MGP_CASTEiJ_G0022601.1 mouse_genomes_project 17 24581881 24584709 - MGP_CASTEiJ_P0046013 Rhbdl1 protein_coding protein_coding MGP_CASTEiJ_T0046014.1 MGP_CASTEiJ_G0022601.1 mouse_genomes_project 17 24582018 24584496 - MGP_CASTEiJ_P0046014 Rhbdl1 protein_coding protein_coding MGP_CASTEiJ_T0046015.1 MGP_CASTEiJ_G0022601.1 mouse_genomes_project 17 24583186 24584665 - MGP_CASTEiJ_P0046015 Rhbdl1 protein_coding protein_coding MGP_CASTEiJ_T0102164.1 MGP_CASTEiJ_G0038889.1 mouse_genomes_project 17 36711545 36711766 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0047597.1 MGP_CASTEiJ_G0023004.1 mouse_genomes_project 17 46694079 46721464 - MGP_CASTEiJ_P0047597 Tmem63b protein_coding protein_coding MGP_CASTEiJ_T0047598.1 MGP_CASTEiJ_G0023004.1 mouse_genomes_project 17 46696927 46699137 - Tmem63b protein_coding retained_intron MGP_CASTEiJ_T0047599.1 MGP_CASTEiJ_G0023004.1 mouse_genomes_project 17 46698017 46700609 - Tmem63b protein_coding retained_intron MGP_CASTEiJ_T0047600.1 MGP_CASTEiJ_G0023004.1 mouse_genomes_project 17 46701870 46721247 - MGP_CASTEiJ_P0047600 Tmem63b protein_coding protein_coding MGP_CASTEiJ_T0047601.1 MGP_CASTEiJ_G0023004.1 mouse_genomes_project 17 46704172 46722111 - MGP_CASTEiJ_P0047601 Tmem63b protein_coding protein_coding MGP_CASTEiJ_T0047602.1 MGP_CASTEiJ_G0023004.1 mouse_genomes_project 17 46707881 46715898 - MGP_CASTEiJ_P0047602 Tmem63b protein_coding protein_coding MGP_CASTEiJ_T0047603.1 MGP_CASTEiJ_G0023004.1 mouse_genomes_project 17 46708111 46721411 - MGP_CASTEiJ_P0047603 Tmem63b protein_coding protein_coding MGP_CASTEiJ_T0047604.1 MGP_CASTEiJ_G0023004.1 mouse_genomes_project 17 46714235 46721394 - MGP_CASTEiJ_P0047604 Tmem63b protein_coding protein_coding MGP_CASTEiJ_T0047605.1 MGP_CASTEiJ_G0023004.1 mouse_genomes_project 17 46721451 46722093 - Tmem63b protein_coding processed_transcript MGP_CASTEiJ_T0046612.1 MGP_CASTEiJ_G0022737.1 mouse_genomes_project 17 32363194 32378319 - MGP_CASTEiJ_P0046612 Zfp871 protein_coding protein_coding MGP_CASTEiJ_T0046613.1 MGP_CASTEiJ_G0022737.1 mouse_genomes_project 17 32364019 32378429 - Zfp871 protein_coding processed_transcript MGP_CASTEiJ_T0006756.1 MGP_CASTEiJ_G0005578.1 mouse_genomes_project 17 33399982 33402354 - 4931413I07Rik lincRNA lincRNA MGP_CASTEiJ_T0046949.1 MGP_CASTEiJ_G0022813.1 mouse_genomes_project 17 34533812 34534805 - protein_coding retained_intron MGP_CASTEiJ_T0047739.1 MGP_CASTEiJ_G0023041.1 mouse_genomes_project 17 47895752 47907856 - MGP_CASTEiJ_P0047739 Rpl7l1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048068.1 MGP_CASTEiJ_G0023145.1 mouse_genomes_project 17 58608546 58665169 - MGP_CASTEiJ_P0048068 Rfx2 protein_coding protein_coding MGP_CASTEiJ_T0048069.1 MGP_CASTEiJ_G0023145.1 mouse_genomes_project 17 58608546 58665169 - MGP_CASTEiJ_P0048069 Rfx2 protein_coding protein_coding MGP_CASTEiJ_T0048262.1 MGP_CASTEiJ_G0023208.1 mouse_genomes_project 17 73564768 73677122 + MGP_CASTEiJ_P0048262 Myom1 protein_coding protein_coding MGP_CASTEiJ_T0048263.1 MGP_CASTEiJ_G0023208.1 mouse_genomes_project 17 73564815 73677123 + MGP_CASTEiJ_P0048263 Myom1 protein_coding protein_coding MGP_CASTEiJ_T0048264.1 MGP_CASTEiJ_G0023208.1 mouse_genomes_project 17 73564815 73677125 + MGP_CASTEiJ_P0048264 Myom1 protein_coding protein_coding MGP_CASTEiJ_T0047764.1 MGP_CASTEiJ_G0023050.1 mouse_genomes_project 17 48583289 48609677 - MGP_CASTEiJ_P0047764 1700001C19Rik protein_coding protein_coding MGP_CASTEiJ_T0047765.1 MGP_CASTEiJ_G0023050.1 mouse_genomes_project 17 48583930 48592330 - MGP_CASTEiJ_P0047765 1700001C19Rik protein_coding protein_coding MGP_CASTEiJ_T0047766.1 MGP_CASTEiJ_G0023050.1 mouse_genomes_project 17 48583938 48585267 - 1700001C19Rik protein_coding processed_transcript MGP_CASTEiJ_T0047767.1 MGP_CASTEiJ_G0023050.1 mouse_genomes_project 17 48584183 48609678 - 1700001C19Rik protein_coding processed_transcript MGP_CASTEiJ_T0047547.1 MGP_CASTEiJ_G0022992.1 mouse_genomes_project 17 45756978 46113800 + MGP_CASTEiJ_P0047547 Supt3 protein_coding protein_coding MGP_CASTEiJ_T0047548.1 MGP_CASTEiJ_G0022992.1 mouse_genomes_project 17 45757151 45918048 + Supt3 protein_coding processed_transcript MGP_CASTEiJ_T0047549.1 MGP_CASTEiJ_G0022992.1 mouse_genomes_project 17 45757222 46113796 + MGP_CASTEiJ_P0047549 Supt3 protein_coding protein_coding MGP_CASTEiJ_T0047550.1 MGP_CASTEiJ_G0022992.1 mouse_genomes_project 17 45766825 46113789 + MGP_CASTEiJ_P0047550 Supt3 protein_coding protein_coding MGP_CASTEiJ_T0048545.1 MGP_CASTEiJ_G0023312.1 mouse_genomes_project 17 91683748 91704159 + MGP_CASTEiJ_P0048545 Msh6 protein_coding protein_coding MGP_CASTEiJ_T0046210.1 MGP_CASTEiJ_G0022645.1 mouse_genomes_project 17 26499532 26508176 + MGP_CASTEiJ_P0046210 Hmga1-rs1 protein_coding protein_coding MGP_CASTEiJ_T0046211.1 MGP_CASTEiJ_G0022645.1 mouse_genomes_project 17 26499535 26508170 + MGP_CASTEiJ_P0046211 Hmga1-rs1 protein_coding protein_coding MGP_CASTEiJ_T0046212.1 MGP_CASTEiJ_G0022645.1 mouse_genomes_project 17 26499553 26507505 + MGP_CASTEiJ_P0046212 Hmga1-rs1 protein_coding protein_coding MGP_CASTEiJ_T0046213.1 MGP_CASTEiJ_G0022645.1 mouse_genomes_project 17 26499580 26508165 + MGP_CASTEiJ_P0046213 Hmga1-rs1 protein_coding protein_coding MGP_CASTEiJ_T0046214.1 MGP_CASTEiJ_G0022645.1 mouse_genomes_project 17 26499580 26507540 + MGP_CASTEiJ_P0046214 Hmga1-rs1 protein_coding protein_coding MGP_CASTEiJ_T0047487.1 MGP_CASTEiJ_G0022968.1 mouse_genomes_project 17 41534933 41566887 + MGP_CASTEiJ_P0047487 Rhag protein_coding protein_coding MGP_CASTEiJ_T0100765.1 MGP_CASTEiJ_G0037678.1 mouse_genomes_project 17 35113510 35113586 + Gm25128 snoRNA snoRNA MGP_CASTEiJ_T0046295.1 MGP_CASTEiJ_G0022663.1 mouse_genomes_project 17 27367701 27371674 + MGP_CASTEiJ_P0046295 protein_coding protein_coding MGP_CASTEiJ_T0046296.1 MGP_CASTEiJ_G0022663.1 mouse_genomes_project 17 27367813 27368870 + protein_coding retained_intron MGP_CASTEiJ_T0046297.1 MGP_CASTEiJ_G0022663.1 mouse_genomes_project 17 27367814 27371674 + MGP_CASTEiJ_P0046297 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046298.1 MGP_CASTEiJ_G0022663.1 mouse_genomes_project 17 27367840 27368627 + protein_coding retained_intron MGP_CASTEiJ_T0046299.1 MGP_CASTEiJ_G0022663.1 mouse_genomes_project 17 27367877 27368754 + protein_coding retained_intron MGP_CASTEiJ_T0046300.1 MGP_CASTEiJ_G0022663.1 mouse_genomes_project 17 27368041 27372330 + protein_coding retained_intron MGP_CASTEiJ_T0046301.1 MGP_CASTEiJ_G0022663.1 mouse_genomes_project 17 27368508 27371669 + protein_coding retained_intron MGP_CASTEiJ_T0046896.1 MGP_CASTEiJ_G0022804.1 mouse_genomes_project 17 34373528 34378336 + MGP_CASTEiJ_P0046896 Pbx2 protein_coding protein_coding MGP_CASTEiJ_T0046897.1 MGP_CASTEiJ_G0022804.1 mouse_genomes_project 17 34373708 34377353 + MGP_CASTEiJ_P0046897 Pbx2 protein_coding protein_coding MGP_CASTEiJ_T0046898.1 MGP_CASTEiJ_G0022804.1 mouse_genomes_project 17 34374366 34375349 + MGP_CASTEiJ_P0046898 Pbx2 protein_coding protein_coding MGP_CASTEiJ_T0046899.1 MGP_CASTEiJ_G0022804.1 mouse_genomes_project 17 34376396 34377164 + Pbx2 protein_coding retained_intron MGP_CASTEiJ_T0047899.1 MGP_CASTEiJ_G0023084.1 mouse_genomes_project 17 50864287 50873685 + MGP_CASTEiJ_P0047899 Mocs1 protein_coding protein_coding MGP_CASTEiJ_T0047900.1 MGP_CASTEiJ_G0023084.1 mouse_genomes_project 17 50864289 50884986 + MGP_CASTEiJ_P0047900 Mocs1 protein_coding protein_coding MGP_CASTEiJ_T0047901.1 MGP_CASTEiJ_G0023084.1 mouse_genomes_project 17 50864335 50884989 + MGP_CASTEiJ_P0047901 Mocs1 protein_coding protein_coding MGP_CASTEiJ_T0047902.1 MGP_CASTEiJ_G0023084.1 mouse_genomes_project 17 50864367 50884350 + MGP_CASTEiJ_P0047902 Mocs1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047903.1 MGP_CASTEiJ_G0023084.1 mouse_genomes_project 17 50864367 50884350 + MGP_CASTEiJ_P0047903 Mocs1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047904.1 MGP_CASTEiJ_G0023084.1 mouse_genomes_project 17 50864462 50884987 + MGP_CASTEiJ_P0047904 Mocs1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047905.1 MGP_CASTEiJ_G0023084.1 mouse_genomes_project 17 50869038 50871375 + Mocs1 protein_coding processed_transcript MGP_CASTEiJ_T0047906.1 MGP_CASTEiJ_G0023084.1 mouse_genomes_project 17 50879399 50883828 + MGP_CASTEiJ_P0047906 Mocs1 protein_coding protein_coding MGP_CASTEiJ_T0047907.1 MGP_CASTEiJ_G0023084.1 mouse_genomes_project 17 50881844 50884989 + MGP_CASTEiJ_P0047907 Mocs1 protein_coding protein_coding MGP_CASTEiJ_T0048384.1 MGP_CASTEiJ_G0023248.1 mouse_genomes_project 17 81966344 81970156 + MGP_CASTEiJ_P0048384 Cebpzos protein_coding protein_coding MGP_CASTEiJ_T0048385.1 MGP_CASTEiJ_G0023248.1 mouse_genomes_project 17 81966361 81970156 + MGP_CASTEiJ_P0048385 Cebpzos protein_coding protein_coding MGP_CASTEiJ_T0048386.1 MGP_CASTEiJ_G0023248.1 mouse_genomes_project 17 81966544 81968291 + MGP_CASTEiJ_P0048386 Cebpzos protein_coding protein_coding MGP_CASTEiJ_T0012887.1 MGP_CASTEiJ_G0011050.1 mouse_genomes_project 17 55756434 55757395 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011099.1 MGP_CASTEiJ_G0009287.1 mouse_genomes_project 17 48142016 48142310 - Gm23657 misc_RNA misc_RNA MGP_CASTEiJ_T0011101.1 MGP_CASTEiJ_G0009289.1 mouse_genomes_project 17 63267364 63267660 + Gm23773 misc_RNA misc_RNA MGP_CASTEiJ_T0046230.1 MGP_CASTEiJ_G0022649.1 mouse_genomes_project 17 26591833 26598258 - MGP_CASTEiJ_P0046230 Rps10 protein_coding protein_coding MGP_CASTEiJ_T0046231.1 MGP_CASTEiJ_G0022649.1 mouse_genomes_project 17 26594636 26597128 - Rps10 protein_coding retained_intron MGP_CASTEiJ_T0048417.1 MGP_CASTEiJ_G0023262.1 mouse_genomes_project 17 83392926 83396275 + Gemin6 protein_coding processed_transcript MGP_CASTEiJ_T0048418.1 MGP_CASTEiJ_G0023262.1 mouse_genomes_project 17 83392926 83400161 + MGP_CASTEiJ_P0048418 Gemin6 protein_coding protein_coding MGP_CASTEiJ_T0006715.1 MGP_CASTEiJ_G0005545.1 mouse_genomes_project 17 6639787 6661977 - 6530411M01Rik lincRNA lincRNA MGP_CASTEiJ_T0102180.1 MGP_CASTEiJ_G0038905.1 mouse_genomes_project 17 37692203 37693042 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045280.1 MGP_CASTEiJ_G0022369.1 mouse_genomes_project 17 5157651 5208369 + MGP_CASTEiJ_P0045280 protein_coding protein_coding MGP_CASTEiJ_T0046596.1 MGP_CASTEiJ_G0022730.1 mouse_genomes_project 17 31917337 31925138 - MGP_CASTEiJ_P0046596 Pglyrp2 protein_coding protein_coding MGP_CASTEiJ_T0046597.1 MGP_CASTEiJ_G0022730.1 mouse_genomes_project 17 31917598 31927831 - MGP_CASTEiJ_P0046597 Pglyrp2 protein_coding protein_coding MGP_CASTEiJ_T0003657.1 MGP_CASTEiJ_G0003297.1 mouse_genomes_project 17 60880717 60899073 + Nudt12os antisense antisense MGP_CASTEiJ_T0003658.1 MGP_CASTEiJ_G0003297.1 mouse_genomes_project 17 60880742 60913508 + Nudt12os antisense antisense MGP_CASTEiJ_T0003659.1 MGP_CASTEiJ_G0003297.1 mouse_genomes_project 17 60904249 60913256 + Nudt12os antisense antisense MGP_CASTEiJ_T0045561.1 MGP_CASTEiJ_G0022479.1 mouse_genomes_project 17 20715367 20732678 + MGP_CASTEiJ_P0045561 Zfp758 protein_coding protein_coding MGP_CASTEiJ_T0045562.1 MGP_CASTEiJ_G0022479.1 mouse_genomes_project 17 20715367 20733701 + MGP_CASTEiJ_P0045562 Zfp758 protein_coding protein_coding MGP_CASTEiJ_T0045563.1 MGP_CASTEiJ_G0022479.1 mouse_genomes_project 17 20715367 20733700 + MGP_CASTEiJ_P0045563 Zfp758 protein_coding protein_coding MGP_CASTEiJ_T0045564.1 MGP_CASTEiJ_G0022479.1 mouse_genomes_project 17 20715421 20733701 + MGP_CASTEiJ_P0045564 Zfp758 protein_coding protein_coding MGP_CASTEiJ_T0099521.1 MGP_CASTEiJ_G0036434.1 mouse_genomes_project 17 13510862 13510968 - Gm25598 snRNA snRNA MGP_CASTEiJ_T0006754.1 MGP_CASTEiJ_G0005576.1 mouse_genomes_project 17 31789267 31808121 + Gm26549 lincRNA lincRNA MGP_CASTEiJ_T0100768.1 MGP_CASTEiJ_G0037681.1 mouse_genomes_project 17 56419966 56420103 + Gm26291 snoRNA snoRNA MGP_CASTEiJ_T0045705.1 MGP_CASTEiJ_G0022523.1 mouse_genomes_project 17 22957797 23010701 + Abca3 protein_coding retained_intron MGP_CASTEiJ_T0045706.1 MGP_CASTEiJ_G0022523.1 mouse_genomes_project 17 22957870 23022831 + MGP_CASTEiJ_P0045706 Abca3 protein_coding protein_coding MGP_CASTEiJ_T0045707.1 MGP_CASTEiJ_G0022523.1 mouse_genomes_project 17 22957893 23022831 + MGP_CASTEiJ_P0045707 Abca3 protein_coding protein_coding MGP_CASTEiJ_T0045708.1 MGP_CASTEiJ_G0022523.1 mouse_genomes_project 17 22957932 22986965 + Abca3 protein_coding retained_intron MGP_CASTEiJ_T0045709.1 MGP_CASTEiJ_G0022523.1 mouse_genomes_project 17 22957932 23013895 + Abca3 protein_coding retained_intron MGP_CASTEiJ_T0045710.1 MGP_CASTEiJ_G0022523.1 mouse_genomes_project 17 22957944 22966871 + Abca3 protein_coding processed_transcript MGP_CASTEiJ_T0045711.1 MGP_CASTEiJ_G0022523.1 mouse_genomes_project 17 22957949 22992441 + Abca3 protein_coding retained_intron MGP_CASTEiJ_T0045712.1 MGP_CASTEiJ_G0022523.1 mouse_genomes_project 17 22970305 23022831 + MGP_CASTEiJ_P0045712 Abca3 protein_coding protein_coding MGP_CASTEiJ_T0046250.1 MGP_CASTEiJ_G0022656.1 mouse_genomes_project 17 26908549 27070644 + MGP_CASTEiJ_P0046250 Anks1 protein_coding protein_coding MGP_CASTEiJ_T0046251.1 MGP_CASTEiJ_G0022656.1 mouse_genomes_project 17 26908581 27070641 + MGP_CASTEiJ_P0046251 Anks1 protein_coding protein_coding MGP_CASTEiJ_T0046252.1 MGP_CASTEiJ_G0022656.1 mouse_genomes_project 17 26908581 27070641 + MGP_CASTEiJ_P0046252 Anks1 protein_coding protein_coding MGP_CASTEiJ_T0046253.1 MGP_CASTEiJ_G0022656.1 mouse_genomes_project 17 27010616 27070643 + Anks1 protein_coding processed_transcript MGP_CASTEiJ_T0048328.1 MGP_CASTEiJ_G0023233.1 mouse_genomes_project 17 77279573 77290307 + MGP_CASTEiJ_P0048328 Yipf4 protein_coding protein_coding MGP_CASTEiJ_T0045523.1 MGP_CASTEiJ_G0022458.1 mouse_genomes_project 17 18903357 18904516 - MGP_CASTEiJ_P0045523 Vmn1r232 protein_coding protein_coding MGP_CASTEiJ_T0047446.1 MGP_CASTEiJ_G0022936.1 mouse_genomes_project 17 38123911 38124852 + MGP_CASTEiJ_P0047446 Olfr123 protein_coding protein_coding MGP_CASTEiJ_T0048511.1 MGP_CASTEiJ_G0023304.1 mouse_genomes_project 17 90883718 90896395 - MGP_CASTEiJ_P0048511 Mcfd2 protein_coding protein_coding MGP_CASTEiJ_T0048512.1 MGP_CASTEiJ_G0023304.1 mouse_genomes_project 17 90883720 90896364 - MGP_CASTEiJ_P0048512 Mcfd2 protein_coding protein_coding MGP_CASTEiJ_T0048513.1 MGP_CASTEiJ_G0023304.1 mouse_genomes_project 17 90884848 90896340 - MGP_CASTEiJ_P0048513 Mcfd2 protein_coding protein_coding MGP_CASTEiJ_T0048514.1 MGP_CASTEiJ_G0023304.1 mouse_genomes_project 17 90885030 90896355 - MGP_CASTEiJ_P0048514 Mcfd2 protein_coding protein_coding MGP_CASTEiJ_T0048515.1 MGP_CASTEiJ_G0023304.1 mouse_genomes_project 17 90885818 90896334 - MGP_CASTEiJ_P0048515 Mcfd2 protein_coding protein_coding MGP_CASTEiJ_T0048516.1 MGP_CASTEiJ_G0023304.1 mouse_genomes_project 17 90886290 90896340 - MGP_CASTEiJ_P0048516 Mcfd2 protein_coding protein_coding MGP_CASTEiJ_T0048517.1 MGP_CASTEiJ_G0023304.1 mouse_genomes_project 17 90888987 90896323 - Mcfd2 protein_coding processed_transcript MGP_CASTEiJ_T0047558.1 MGP_CASTEiJ_G0022999.1 mouse_genomes_project 17 46590372 46593988 + MGP_CASTEiJ_P0047558 Slc35b2 protein_coding protein_coding MGP_CASTEiJ_T0009898.1 MGP_CASTEiJ_G0008086.1 mouse_genomes_project 17 15584999 15585069 + Mir99b miRNA miRNA MGP_CASTEiJ_T0099554.1 MGP_CASTEiJ_G0036467.1 mouse_genomes_project 17 97210903 97211010 - Gm25935 snRNA snRNA MGP_CASTEiJ_T0046416.1 MGP_CASTEiJ_G0022688.1 mouse_genomes_project 17 28461698 28477036 - MGP_CASTEiJ_P0046416 Mtch1 protein_coding protein_coding MGP_CASTEiJ_T0046417.1 MGP_CASTEiJ_G0022688.1 mouse_genomes_project 17 28461702 28477036 - MGP_CASTEiJ_P0046417 Mtch1 protein_coding protein_coding MGP_CASTEiJ_T0046418.1 MGP_CASTEiJ_G0022688.1 mouse_genomes_project 17 28461740 28463630 - Mtch1 protein_coding processed_transcript MGP_CASTEiJ_T0046419.1 MGP_CASTEiJ_G0022688.1 mouse_genomes_project 17 28463343 28463732 - Mtch1 protein_coding processed_transcript MGP_CASTEiJ_T0046420.1 MGP_CASTEiJ_G0022688.1 mouse_genomes_project 17 28464835 28469772 - Mtch1 protein_coding retained_intron MGP_CASTEiJ_T0046421.1 MGP_CASTEiJ_G0022688.1 mouse_genomes_project 17 28469152 28476303 - MGP_CASTEiJ_P0046421 Mtch1 protein_coding protein_coding MGP_CASTEiJ_T0046422.1 MGP_CASTEiJ_G0022688.1 mouse_genomes_project 17 28470138 28472259 - Mtch1 protein_coding retained_intron MGP_CASTEiJ_T0016857.1 MGP_CASTEiJ_G0014670.1 mouse_genomes_project 17 94728612 94734451 + 4930480K15Rik processed_transcript processed_transcript MGP_CASTEiJ_T0045763.1 MGP_CASTEiJ_G0022534.1 mouse_genomes_project 17 23185845 23237646 + MGP_CASTEiJ_P0045763 Pkd1 protein_coding protein_coding MGP_CASTEiJ_T0045764.1 MGP_CASTEiJ_G0022534.1 mouse_genomes_project 17 23185912 23229069 + MGP_CASTEiJ_P0045764 Pkd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045765.1 MGP_CASTEiJ_G0022534.1 mouse_genomes_project 17 23186158 23237621 + MGP_CASTEiJ_P0045765 Pkd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012908.1 MGP_CASTEiJ_G0011071.1 mouse_genomes_project 17 89093459 89093787 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0047738.1 MGP_CASTEiJ_G0023040.1 mouse_genomes_project 17 47894973 47895746 + MGP_CASTEiJ_P0047738 2310039H08Rik protein_coding protein_coding MGP_CASTEiJ_T0100756.1 MGP_CASTEiJ_G0037669.1 mouse_genomes_project 17 23159007 23159085 + Snord60 snoRNA snoRNA MGP_CASTEiJ_T0003629.1 MGP_CASTEiJ_G0003275.1 mouse_genomes_project 17 33881143 33884862 - Gm20496 antisense antisense MGP_CASTEiJ_T0003630.1 MGP_CASTEiJ_G0003275.1 mouse_genomes_project 17 33881799 33886334 - Gm20496 antisense antisense MGP_CASTEiJ_T0047012.1 MGP_CASTEiJ_G0022823.1 mouse_genomes_project 17 34742963 34758893 + Slc44a4 protein_coding retained_intron MGP_CASTEiJ_T0047013.1 MGP_CASTEiJ_G0022823.1 mouse_genomes_project 17 34742967 34758870 + MGP_CASTEiJ_P0047013 Slc44a4 protein_coding protein_coding MGP_CASTEiJ_T0047014.1 MGP_CASTEiJ_G0022823.1 mouse_genomes_project 17 34746238 34758953 + MGP_CASTEiJ_P0047014 Slc44a4 protein_coding protein_coding MGP_CASTEiJ_T0000951.1 MGP_CASTEiJ_G0000887.1 mouse_genomes_project 17 53420221 53423392 - TEC TEC MGP_CASTEiJ_T0048291.1 MGP_CASTEiJ_G0023214.1 mouse_genomes_project 17 74130393 74162419 + MGP_CASTEiJ_P0048291 Spdya protein_coding protein_coding MGP_CASTEiJ_T0048292.1 MGP_CASTEiJ_G0023214.1 mouse_genomes_project 17 74130393 74173206 + MGP_CASTEiJ_P0048292 Spdya protein_coding protein_coding MGP_CASTEiJ_T0048293.1 MGP_CASTEiJ_G0023214.1 mouse_genomes_project 17 74130404 74173206 + MGP_CASTEiJ_P0048293 Spdya protein_coding protein_coding MGP_CASTEiJ_T0048294.1 MGP_CASTEiJ_G0023214.1 mouse_genomes_project 17 74135726 74172350 + MGP_CASTEiJ_P0048294 Spdya protein_coding protein_coding MGP_CASTEiJ_T0006776.1 MGP_CASTEiJ_G0005595.1 mouse_genomes_project 17 47373560 47380202 + Gm26785 lincRNA lincRNA MGP_CASTEiJ_T0045544.1 MGP_CASTEiJ_G0022470.1 mouse_genomes_project 17 19675148 19682162 + MGP_CASTEiJ_P0045544 Zfp52 protein_coding protein_coding MGP_CASTEiJ_T0047949.1 MGP_CASTEiJ_G0023097.1 mouse_genomes_project 17 55359081 55373588 - MGP_CASTEiJ_P0047949 Sgol1 protein_coding protein_coding MGP_CASTEiJ_T0047950.1 MGP_CASTEiJ_G0023097.1 mouse_genomes_project 17 55371797 55373541 - Sgol1 protein_coding processed_transcript MGP_CASTEiJ_T0047951.1 MGP_CASTEiJ_G0023097.1 mouse_genomes_project 17 55371944 55373533 - Sgol1 protein_coding processed_transcript MGP_CASTEiJ_T0047553.1 MGP_CASTEiJ_G0022994.1 mouse_genomes_project 17 46460793 46490439 - MGP_CASTEiJ_P0047553 Spats1 protein_coding protein_coding MGP_CASTEiJ_T0045969.1 MGP_CASTEiJ_G0022587.1 mouse_genomes_project 17 24456003 24465712 - MGP_CASTEiJ_P0045969 Chtf18 protein_coding protein_coding MGP_CASTEiJ_T0045970.1 MGP_CASTEiJ_G0022587.1 mouse_genomes_project 17 24456003 24465664 - MGP_CASTEiJ_P0045970 Chtf18 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045971.1 MGP_CASTEiJ_G0022587.1 mouse_genomes_project 17 24456107 24465659 - Chtf18 protein_coding retained_intron MGP_CASTEiJ_T0045972.1 MGP_CASTEiJ_G0022587.1 mouse_genomes_project 17 24456123 24457978 - MGP_CASTEiJ_P0045972 Chtf18 protein_coding protein_coding MGP_CASTEiJ_T0045973.1 MGP_CASTEiJ_G0022587.1 mouse_genomes_project 17 24456124 24456863 - MGP_CASTEiJ_P0045973 Chtf18 protein_coding protein_coding MGP_CASTEiJ_T0045974.1 MGP_CASTEiJ_G0022587.1 mouse_genomes_project 17 24457345 24457975 - Chtf18 protein_coding retained_intron MGP_CASTEiJ_T0045975.1 MGP_CASTEiJ_G0022587.1 mouse_genomes_project 17 24463869 24465703 - MGP_CASTEiJ_P0045975 Chtf18 protein_coding protein_coding MGP_CASTEiJ_T0011104.1 MGP_CASTEiJ_G0009292.1 mouse_genomes_project 17 78977018 78977126 - Gm26124 misc_RNA misc_RNA MGP_CASTEiJ_T0000960.1 MGP_CASTEiJ_G0000896.1 mouse_genomes_project 17 87369112 87373169 - TEC TEC MGP_CASTEiJ_T0046951.1 MGP_CASTEiJ_G0022814.1 mouse_genomes_project 17 34648109 34661050 - MGP_CASTEiJ_P0046951 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046078.1 MGP_CASTEiJ_G0022612.1 mouse_genomes_project 17 24722927 24750876 - MGP_CASTEiJ_P0046078 Capn15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0046079.1 MGP_CASTEiJ_G0022612.1 mouse_genomes_project 17 24724121 24750092 - MGP_CASTEiJ_P0046079 Capn15 protein_coding protein_coding MGP_CASTEiJ_T0046413.1 MGP_CASTEiJ_G0022687.1 mouse_genomes_project 17 28447574 28458568 + Pi16 protein_coding retained_intron MGP_CASTEiJ_T0046414.1 MGP_CASTEiJ_G0022687.1 mouse_genomes_project 17 28447894 28458575 + MGP_CASTEiJ_P0046414 Pi16 protein_coding protein_coding MGP_CASTEiJ_T0046415.1 MGP_CASTEiJ_G0022687.1 mouse_genomes_project 17 28447912 28458581 + MGP_CASTEiJ_P0046415 Pi16 protein_coding protein_coding MGP_CASTEiJ_T0102143.1 MGP_CASTEiJ_G0038868.1 mouse_genomes_project 17 34069979 34076789 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0047552.1 MGP_CASTEiJ_G0022993.1 mouse_genomes_project 17 46399242 46443839 - MGP_CASTEiJ_P0047552 Cdc5l protein_coding protein_coding MGP_CASTEiJ_T0012888.1 MGP_CASTEiJ_G0011051.1 mouse_genomes_project 17 56174521 56174662 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046366.1 MGP_CASTEiJ_G0022679.1 mouse_genomes_project 17 28052251 28064511 + MGP_CASTEiJ_P0046366 Kctd20 protein_coding protein_coding MGP_CASTEiJ_T0046367.1 MGP_CASTEiJ_G0022679.1 mouse_genomes_project 17 28052737 28070598 + MGP_CASTEiJ_P0046367 Kctd20 protein_coding protein_coding MGP_CASTEiJ_T0046368.1 MGP_CASTEiJ_G0022679.1 mouse_genomes_project 17 28052767 28069138 + MGP_CASTEiJ_P0046368 Kctd20 protein_coding protein_coding MGP_CASTEiJ_T0046369.1 MGP_CASTEiJ_G0022679.1 mouse_genomes_project 17 28052804 28068299 + Kctd20 protein_coding processed_transcript MGP_CASTEiJ_T0046370.1 MGP_CASTEiJ_G0022679.1 mouse_genomes_project 17 28052900 28069138 + MGP_CASTEiJ_P0046370 Kctd20 protein_coding protein_coding MGP_CASTEiJ_T0046371.1 MGP_CASTEiJ_G0022679.1 mouse_genomes_project 17 28052989 28066282 + MGP_CASTEiJ_P0046371 Kctd20 protein_coding protein_coding MGP_CASTEiJ_T0046372.1 MGP_CASTEiJ_G0022679.1 mouse_genomes_project 17 28053517 28069146 + MGP_CASTEiJ_P0046372 Kctd20 protein_coding protein_coding MGP_CASTEiJ_T0046373.1 MGP_CASTEiJ_G0022679.1 mouse_genomes_project 17 28053517 28069144 + MGP_CASTEiJ_P0046373 Kctd20 protein_coding protein_coding MGP_CASTEiJ_T0006725.1 MGP_CASTEiJ_G0005554.1 mouse_genomes_project 17 19605018 19608698 - Gm26753 lincRNA lincRNA MGP_CASTEiJ_T0047425.1 MGP_CASTEiJ_G0022918.1 mouse_genomes_project 17 37577104 37581370 + MGP_CASTEiJ_P0047425 H2-M3 protein_coding protein_coding MGP_CASTEiJ_T0048403.1 MGP_CASTEiJ_G0023257.1 mouse_genomes_project 17 82960544 83013672 - MGP_CASTEiJ_P0048403 Atl2 protein_coding protein_coding MGP_CASTEiJ_T0048404.1 MGP_CASTEiJ_G0023257.1 mouse_genomes_project 17 82962811 83013670 - MGP_CASTEiJ_P0048404 Atl2 protein_coding protein_coding MGP_CASTEiJ_T0045681.1 MGP_CASTEiJ_G0022519.1 mouse_genomes_project 17 22767850 22800115 - MGP_CASTEiJ_P0045681 Tbc1d24 protein_coding protein_coding MGP_CASTEiJ_T0045682.1 MGP_CASTEiJ_G0022519.1 mouse_genomes_project 17 22767851 22800142 - MGP_CASTEiJ_P0045682 Tbc1d24 protein_coding protein_coding MGP_CASTEiJ_T0045683.1 MGP_CASTEiJ_G0022519.1 mouse_genomes_project 17 22769348 22800095 - MGP_CASTEiJ_P0045683 Tbc1d24 protein_coding protein_coding MGP_CASTEiJ_T0045684.1 MGP_CASTEiJ_G0022519.1 mouse_genomes_project 17 22772418 22800099 - MGP_CASTEiJ_P0045684 Tbc1d24 protein_coding protein_coding MGP_CASTEiJ_T0045685.1 MGP_CASTEiJ_G0022519.1 mouse_genomes_project 17 22772591 22800094 - MGP_CASTEiJ_P0045685 Tbc1d24 protein_coding protein_coding MGP_CASTEiJ_T0045686.1 MGP_CASTEiJ_G0022519.1 mouse_genomes_project 17 22772637 22800111 - MGP_CASTEiJ_P0045686 Tbc1d24 protein_coding protein_coding MGP_CASTEiJ_T0045687.1 MGP_CASTEiJ_G0022519.1 mouse_genomes_project 17 22772648 22794537 - MGP_CASTEiJ_P0045687 Tbc1d24 protein_coding protein_coding MGP_CASTEiJ_T0045688.1 MGP_CASTEiJ_G0022519.1 mouse_genomes_project 17 22772698 22800076 - MGP_CASTEiJ_P0045688 Tbc1d24 protein_coding protein_coding MGP_CASTEiJ_T0045689.1 MGP_CASTEiJ_G0022519.1 mouse_genomes_project 17 22772698 22800103 - MGP_CASTEiJ_P0045689 Tbc1d24 protein_coding protein_coding MGP_CASTEiJ_T0045690.1 MGP_CASTEiJ_G0022519.1 mouse_genomes_project 17 22772717 22800094 - MGP_CASTEiJ_P0045690 Tbc1d24 protein_coding protein_coding MGP_CASTEiJ_T0045691.1 MGP_CASTEiJ_G0022519.1 mouse_genomes_project 17 22772718 22794537 - MGP_CASTEiJ_P0045691 Tbc1d24 protein_coding protein_coding MGP_CASTEiJ_T0045692.1 MGP_CASTEiJ_G0022519.1 mouse_genomes_project 17 22772867 22800105 - MGP_CASTEiJ_P0045692 Tbc1d24 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045693.1 MGP_CASTEiJ_G0022519.1 mouse_genomes_project 17 22774072 22774896 - Tbc1d24 protein_coding processed_transcript MGP_CASTEiJ_T0045694.1 MGP_CASTEiJ_G0022519.1 mouse_genomes_project 17 22775270 22800062 - MGP_CASTEiJ_P0045694 Tbc1d24 protein_coding protein_coding MGP_CASTEiJ_T0045695.1 MGP_CASTEiJ_G0022519.1 mouse_genomes_project 17 22782044 22800099 - Tbc1d24 protein_coding processed_transcript MGP_CASTEiJ_T0045696.1 MGP_CASTEiJ_G0022519.1 mouse_genomes_project 17 22798427 22803969 - MGP_CASTEiJ_P0045696 Tbc1d24 protein_coding protein_coding MGP_CASTEiJ_T0102166.1 MGP_CASTEiJ_G0038891.1 mouse_genomes_project 17 36738656 36741332 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102168.1 MGP_CASTEiJ_G0038893.1 mouse_genomes_project 17 36893174 36894755 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0003600.1 MGP_CASTEiJ_G0003254.1 mouse_genomes_project 17 11374087 11375050 - Gm16049 antisense antisense MGP_CASTEiJ_T0047999.1 MGP_CASTEiJ_G0023124.1 mouse_genomes_project 17 57961299 57969094 - MGP_CASTEiJ_P0047999 Mydgf protein_coding protein_coding MGP_CASTEiJ_T0048000.1 MGP_CASTEiJ_G0023124.1 mouse_genomes_project 17 57963527 57969023 - Mydgf protein_coding retained_intron MGP_CASTEiJ_T0048001.1 MGP_CASTEiJ_G0023124.1 mouse_genomes_project 17 57964543 57968838 - Mydgf protein_coding processed_transcript MGP_CASTEiJ_T0047092.1 MGP_CASTEiJ_G0022842.1 mouse_genomes_project 17 34961891 34967083 - MGP_CASTEiJ_P0047092 Csnk2b protein_coding protein_coding MGP_CASTEiJ_T0047093.1 MGP_CASTEiJ_G0022842.1 mouse_genomes_project 17 34961893 34966940 - MGP_CASTEiJ_P0047093 Csnk2b protein_coding protein_coding MGP_CASTEiJ_T0047094.1 MGP_CASTEiJ_G0022842.1 mouse_genomes_project 17 34961893 34965430 - MGP_CASTEiJ_P0047094 Csnk2b protein_coding protein_coding MGP_CASTEiJ_T0047095.1 MGP_CASTEiJ_G0022842.1 mouse_genomes_project 17 34961895 34966828 - MGP_CASTEiJ_P0047095 Csnk2b protein_coding protein_coding MGP_CASTEiJ_T0047096.1 MGP_CASTEiJ_G0022842.1 mouse_genomes_project 17 34961937 34963728 - MGP_CASTEiJ_P0047096 Csnk2b protein_coding protein_coding MGP_CASTEiJ_T0047097.1 MGP_CASTEiJ_G0022842.1 mouse_genomes_project 17 34963350 34964436 - Csnk2b protein_coding retained_intron MGP_CASTEiJ_T0047098.1 MGP_CASTEiJ_G0022842.1 mouse_genomes_project 17 34963351 34967707 - MGP_CASTEiJ_P0047098 Csnk2b protein_coding protein_coding MGP_CASTEiJ_T0047099.1 MGP_CASTEiJ_G0022842.1 mouse_genomes_project 17 34963650 34966685 - MGP_CASTEiJ_P0047099 Csnk2b protein_coding protein_coding MGP_CASTEiJ_T0047100.1 MGP_CASTEiJ_G0022842.1 mouse_genomes_project 17 34965408 34967652 - MGP_CASTEiJ_P0047100 Csnk2b protein_coding protein_coding MGP_CASTEiJ_T0047101.1 MGP_CASTEiJ_G0022842.1 mouse_genomes_project 17 34966172 34967090 - Csnk2b protein_coding retained_intron MGP_CASTEiJ_T0048500.1 MGP_CASTEiJ_G0023297.1 mouse_genomes_project 17 90348096 90434571 + MGP_CASTEiJ_P0048500 Epas1 protein_coding protein_coding MGP_CASTEiJ_T0102110.1 MGP_CASTEiJ_G0038835.1 mouse_genomes_project 17 15854841 16234377 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0048070.1 MGP_CASTEiJ_G0023146.1 mouse_genomes_project 17 58677043 58712680 - MGP_CASTEiJ_P0048070 Acsbg2 protein_coding protein_coding MGP_CASTEiJ_T0048597.1 MGP_CASTEiJ_G0023321.1 mouse_genomes_project 17 94987632 94988531 + MGP_CASTEiJ_P0048597 Gm10308 protein_coding protein_coding MGP_CASTEiJ_T0046930.1 MGP_CASTEiJ_G0022809.1 mouse_genomes_project 17 34397656 34409362 - MGP_CASTEiJ_P0046930 Ppt2 protein_coding protein_coding MGP_CASTEiJ_T0046931.1 MGP_CASTEiJ_G0022809.1 mouse_genomes_project 17 34397657 34409304 - MGP_CASTEiJ_P0046931 Ppt2 protein_coding protein_coding MGP_CASTEiJ_T0046932.1 MGP_CASTEiJ_G0022809.1 mouse_genomes_project 17 34397658 34409075 - MGP_CASTEiJ_P0046932 Ppt2 protein_coding protein_coding MGP_CASTEiJ_T0046933.1 MGP_CASTEiJ_G0022809.1 mouse_genomes_project 17 34398223 34409405 - MGP_CASTEiJ_P0046933 Ppt2 protein_coding protein_coding MGP_CASTEiJ_T0046934.1 MGP_CASTEiJ_G0022809.1 mouse_genomes_project 17 34398223 34409445 - MGP_CASTEiJ_P0046934 Ppt2 protein_coding protein_coding MGP_CASTEiJ_T0046935.1 MGP_CASTEiJ_G0022809.1 mouse_genomes_project 17 34398223 34409959 - MGP_CASTEiJ_P0046935 Ppt2 protein_coding protein_coding MGP_CASTEiJ_T0046936.1 MGP_CASTEiJ_G0022809.1 mouse_genomes_project 17 34398308 34408855 - MGP_CASTEiJ_P0046936 Ppt2 protein_coding protein_coding MGP_CASTEiJ_T0046937.1 MGP_CASTEiJ_G0022809.1 mouse_genomes_project 17 34403711 34410430 - MGP_CASTEiJ_P0046937 Ppt2 protein_coding protein_coding MGP_CASTEiJ_T0046938.1 MGP_CASTEiJ_G0022809.1 mouse_genomes_project 17 34403907 34409353 - MGP_CASTEiJ_P0046938 Ppt2 protein_coding protein_coding MGP_CASTEiJ_T0046939.1 MGP_CASTEiJ_G0022809.1 mouse_genomes_project 17 34408415 34409077 - MGP_CASTEiJ_P0046939 Ppt2 protein_coding protein_coding MGP_CASTEiJ_T0045825.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23562648 23609162 - MGP_CASTEiJ_P0045825 Mapk8ip3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045840.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23568011 23609201 - MGP_CASTEiJ_P0045840 Mapk8ip3 protein_coding protein_coding MGP_CASTEiJ_T0045841.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23568011 23609201 - MGP_CASTEiJ_P0045841 Mapk8ip3 protein_coding protein_coding MGP_CASTEiJ_T0045842.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23568038 23609118 - MGP_CASTEiJ_P0045842 Mapk8ip3 protein_coding protein_coding MGP_CASTEiJ_T0045843.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23568038 23609136 - MGP_CASTEiJ_P0045843 Mapk8ip3 protein_coding protein_coding MGP_CASTEiJ_T0045844.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23568038 23609192 - MGP_CASTEiJ_P0045844 Mapk8ip3 protein_coding protein_coding MGP_CASTEiJ_T0045845.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23568038 23609191 - MGP_CASTEiJ_P0045845 Mapk8ip3 protein_coding protein_coding MGP_CASTEiJ_T0045846.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23568039 23609153 - MGP_CASTEiJ_P0045846 Mapk8ip3 protein_coding protein_coding MGP_CASTEiJ_T0045847.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23569113 23570223 - Mapk8ip3 protein_coding retained_intron MGP_CASTEiJ_T0045848.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23569304 23609184 - MGP_CASTEiJ_P0045848 Mapk8ip3 protein_coding protein_coding MGP_CASTEiJ_T0045849.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23569345 23609112 - MGP_CASTEiJ_P0045849 Mapk8ip3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045850.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23569453 23609192 - MGP_CASTEiJ_P0045850 Mapk8ip3 protein_coding protein_coding MGP_CASTEiJ_T0045851.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23570169 23571592 - Mapk8ip3 protein_coding retained_intron MGP_CASTEiJ_T0045852.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23571049 23572224 - Mapk8ip3 protein_coding retained_intron MGP_CASTEiJ_T0045853.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23572323 23573588 - Mapk8ip3 protein_coding retained_intron MGP_CASTEiJ_T0045854.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23573196 23573871 - Mapk8ip3 protein_coding retained_intron MGP_CASTEiJ_T0045855.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23575035 23576294 - Mapk8ip3 protein_coding retained_intron MGP_CASTEiJ_T0045856.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23575686 23577305 - Mapk8ip3 protein_coding retained_intron MGP_CASTEiJ_T0045857.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23577341 23587169 - Mapk8ip3 protein_coding processed_transcript MGP_CASTEiJ_T0045858.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23577431 23594453 - MGP_CASTEiJ_P0045858 Mapk8ip3 protein_coding protein_coding MGP_CASTEiJ_T0045859.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23585956 23594796 - Mapk8ip3 protein_coding retained_intron MGP_CASTEiJ_T0045860.1 MGP_CASTEiJ_G0022557.1 mouse_genomes_project 17 23599545 23609169 - Mapk8ip3 protein_coding retained_intron MGP_CASTEiJ_T0100780.1 MGP_CASTEiJ_G0037693.1 mouse_genomes_project 17 90667069 90667201 - Gm24648 snoRNA snoRNA MGP_CASTEiJ_T0045678.1 MGP_CASTEiJ_G0022518.1 mouse_genomes_project 17 22756608 22759465 - Atp6v0c protein_coding processed_transcript MGP_CASTEiJ_T0045679.1 MGP_CASTEiJ_G0022518.1 mouse_genomes_project 17 22756895 22757740 - MGP_CASTEiJ_P0045679 Atp6v0c protein_coding protein_coding MGP_CASTEiJ_T0045680.1 MGP_CASTEiJ_G0022518.1 mouse_genomes_project 17 22757162 22762088 - MGP_CASTEiJ_P0045680 Atp6v0c protein_coding protein_coding MGP_CASTEiJ_T0048168.1 MGP_CASTEiJ_G0023188.1 mouse_genomes_project 17 68246922 68367439 - MGP_CASTEiJ_P0048168 Ankrd12 protein_coding protein_coding MGP_CASTEiJ_T0048169.1 MGP_CASTEiJ_G0023188.1 mouse_genomes_project 17 68247434 68251801 - Ankrd12 protein_coding processed_transcript MGP_CASTEiJ_T0048170.1 MGP_CASTEiJ_G0023188.1 mouse_genomes_project 17 68256312 68263337 - Ankrd12 protein_coding processed_transcript MGP_CASTEiJ_T0048171.1 MGP_CASTEiJ_G0023188.1 mouse_genomes_project 17 68267427 68367415 - MGP_CASTEiJ_P0048171 Ankrd12 protein_coding protein_coding MGP_CASTEiJ_T0048172.1 MGP_CASTEiJ_G0023188.1 mouse_genomes_project 17 68297177 68367437 - Ankrd12 protein_coding retained_intron MGP_CASTEiJ_T0048173.1 MGP_CASTEiJ_G0023188.1 mouse_genomes_project 17 68320218 68367482 - Ankrd12 protein_coding retained_intron MGP_CASTEiJ_T0048174.1 MGP_CASTEiJ_G0023188.1 mouse_genomes_project 17 68320565 68367432 - Ankrd12 protein_coding retained_intron MGP_CASTEiJ_T0048175.1 MGP_CASTEiJ_G0023188.1 mouse_genomes_project 17 68338684 68339543 - Ankrd12 protein_coding processed_transcript MGP_CASTEiJ_T0006764.1 MGP_CASTEiJ_G0005585.1 mouse_genomes_project 17 35011245 35013313 + Gm17705 lincRNA lincRNA MGP_CASTEiJ_T0012876.1 MGP_CASTEiJ_G0011039.1 mouse_genomes_project 17 49185876 49186233 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045556.1 MGP_CASTEiJ_G0022476.1 mouse_genomes_project 17 20154468 20198976 - MGP_CASTEiJ_P0045556 protein_coding protein_coding MGP_CASTEiJ_T0047556.1 MGP_CASTEiJ_G0022997.1 mouse_genomes_project 17 46563938 46571519 - MGP_CASTEiJ_P0047556 Tmem151b protein_coding protein_coding MGP_CASTEiJ_T0099524.1 MGP_CASTEiJ_G0036437.1 mouse_genomes_project 17 28092392 28092564 - Gm23887 snRNA snRNA MGP_CASTEiJ_T0012882.1 MGP_CASTEiJ_G0011045.1 mouse_genomes_project 17 55447840 55448224 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046746.1 MGP_CASTEiJ_G0022772.1 mouse_genomes_project 17 33536999 33537953 + Rgl2 protein_coding retained_intron MGP_CASTEiJ_T0046747.1 MGP_CASTEiJ_G0022772.1 mouse_genomes_project 17 33537038 33545146 + MGP_CASTEiJ_P0046747 Rgl2 protein_coding protein_coding MGP_CASTEiJ_T0046748.1 MGP_CASTEiJ_G0022772.1 mouse_genomes_project 17 33537360 33539670 + Rgl2 protein_coding processed_transcript MGP_CASTEiJ_T0046749.1 MGP_CASTEiJ_G0022772.1 mouse_genomes_project 17 33537430 33539835 + Rgl2 protein_coding retained_intron MGP_CASTEiJ_T0046750.1 MGP_CASTEiJ_G0022772.1 mouse_genomes_project 17 33538346 33539493 + Rgl2 protein_coding retained_intron MGP_CASTEiJ_T0046751.1 MGP_CASTEiJ_G0022772.1 mouse_genomes_project 17 33538355 33539977 + Rgl2 protein_coding processed_transcript MGP_CASTEiJ_T0046752.1 MGP_CASTEiJ_G0022772.1 mouse_genomes_project 17 33538371 33539410 + Rgl2 protein_coding retained_intron MGP_CASTEiJ_T0046753.1 MGP_CASTEiJ_G0022772.1 mouse_genomes_project 17 33538673 33539967 + Rgl2 protein_coding retained_intron MGP_CASTEiJ_T0046754.1 MGP_CASTEiJ_G0022772.1 mouse_genomes_project 17 33539515 33540688 + Rgl2 protein_coding retained_intron MGP_CASTEiJ_T0046755.1 MGP_CASTEiJ_G0022772.1 mouse_genomes_project 17 33539594 33540611 + Rgl2 protein_coding retained_intron MGP_CASTEiJ_T0046756.1 MGP_CASTEiJ_G0022772.1 mouse_genomes_project 17 33541383 33544678 + MGP_CASTEiJ_P0046756 Rgl2 protein_coding protein_coding MGP_CASTEiJ_T0046757.1 MGP_CASTEiJ_G0022772.1 mouse_genomes_project 17 33542819 33544344 + Rgl2 protein_coding retained_intron MGP_CASTEiJ_T0006798.1 MGP_CASTEiJ_G0005607.1 mouse_genomes_project 17 73261500 73272389 - 5031415H12Rik lincRNA lincRNA MGP_CASTEiJ_T0047918.1 MGP_CASTEiJ_G0023087.1 mouse_genomes_project 17 51466842 51674306 - MGP_CASTEiJ_P0047918 Rftn1 protein_coding protein_coding MGP_CASTEiJ_T0047919.1 MGP_CASTEiJ_G0023087.1 mouse_genomes_project 17 51509137 51674179 - Rftn1 protein_coding retained_intron MGP_CASTEiJ_T0003634.1 MGP_CASTEiJ_G0003279.1 mouse_genomes_project 17 35551359 35552751 - Gm19553 antisense antisense MGP_CASTEiJ_T0046558.1 MGP_CASTEiJ_G0022723.1 mouse_genomes_project 17 31603176 31649639 - MGP_CASTEiJ_P0046558 Notch3 protein_coding protein_coding MGP_CASTEiJ_T0045286.1 MGP_CASTEiJ_G0022373.1 mouse_genomes_project 17 5407313 5498941 - MGP_CASTEiJ_P0045286 protein_coding protein_coding MGP_CASTEiJ_T0099546.1 MGP_CASTEiJ_G0036459.1 mouse_genomes_project 17 78940471 78940577 + Gm24126 snRNA snRNA MGP_CASTEiJ_T0047961.1 MGP_CASTEiJ_G0023104.1 mouse_genomes_project 17 57412377 57471381 - MGP_CASTEiJ_P0047961 Pot1b protein_coding protein_coding MGP_CASTEiJ_T0048501.1 MGP_CASTEiJ_G0023298.1 mouse_genomes_project 17 90525497 90530513 + MGP_CASTEiJ_P0048501 Tmem247 protein_coding protein_coding MGP_CASTEiJ_T0048502.1 MGP_CASTEiJ_G0023298.1 mouse_genomes_project 17 90526552 90530520 + MGP_CASTEiJ_P0048502 Tmem247 protein_coding protein_coding MGP_CASTEiJ_T0045619.1 MGP_CASTEiJ_G0022498.1 mouse_genomes_project 17 22257680 22269658 + MGP_CASTEiJ_P0045619 Pkmyt1 protein_coding protein_coding MGP_CASTEiJ_T0048461.1 MGP_CASTEiJ_G0023280.1 mouse_genomes_project 17 87156667 87174797 - MGP_CASTEiJ_P0048461 Haao protein_coding protein_coding MGP_CASTEiJ_T0047707.1 MGP_CASTEiJ_G0023027.1 mouse_genomes_project 17 47637674 47646894 - MGP_CASTEiJ_P0047707 Srf protein_coding protein_coding MGP_CASTEiJ_T0048401.1 MGP_CASTEiJ_G0023255.1 mouse_genomes_project 17 82727421 82729421 + MGP_CASTEiJ_P0048401 4921513D11Rik protein_coding protein_coding MGP_CASTEiJ_T0009926.1 MGP_CASTEiJ_G0008114.1 mouse_genomes_project 17 33685092 33685202 - Mir219a-1 miRNA miRNA MGP_CASTEiJ_T0006805.1 MGP_CASTEiJ_G0005613.1 mouse_genomes_project 17 82434767 82438104 + Gm17315 lincRNA lincRNA MGP_CASTEiJ_T0046247.1 MGP_CASTEiJ_G0022655.1 mouse_genomes_project 17 26900378 26908452 - MGP_CASTEiJ_P0046247 Taf11 protein_coding protein_coding MGP_CASTEiJ_T0046248.1 MGP_CASTEiJ_G0022655.1 mouse_genomes_project 17 26900384 26906936 - MGP_CASTEiJ_P0046248 Taf11 protein_coding protein_coding MGP_CASTEiJ_T0046249.1 MGP_CASTEiJ_G0022655.1 mouse_genomes_project 17 26900897 26902506 - Taf11 protein_coding processed_transcript MGP_CASTEiJ_T0045598.1 MGP_CASTEiJ_G0022491.1 mouse_genomes_project 17 22197269 22205129 + MGP_CASTEiJ_P0045598 Ccdc64b protein_coding protein_coding MGP_CASTEiJ_T0045531.1 MGP_CASTEiJ_G0022460.1 mouse_genomes_project 17 19001101 19002061 - MGP_CASTEiJ_P0045531 Vmn1r233 protein_coding protein_coding MGP_CASTEiJ_T0047982.1 MGP_CASTEiJ_G0023116.1 mouse_genomes_project 17 57816686 57851390 + MGP_CASTEiJ_P0047982 Chaf1a protein_coding protein_coding MGP_CASTEiJ_T0046446.1 MGP_CASTEiJ_G0022696.1 mouse_genomes_project 17 28820408 28867431 + MGP_CASTEiJ_P0046446 Cmtr1 protein_coding protein_coding MGP_CASTEiJ_T0046447.1 MGP_CASTEiJ_G0022696.1 mouse_genomes_project 17 28820620 28834102 + MGP_CASTEiJ_P0046447 Cmtr1 protein_coding protein_coding MGP_CASTEiJ_T0046448.1 MGP_CASTEiJ_G0022696.1 mouse_genomes_project 17 28839413 28851786 + Cmtr1 protein_coding retained_intron MGP_CASTEiJ_T0046449.1 MGP_CASTEiJ_G0022696.1 mouse_genomes_project 17 28839791 28842686 + MGP_CASTEiJ_P0046449 Cmtr1 protein_coding protein_coding MGP_CASTEiJ_T0046450.1 MGP_CASTEiJ_G0022696.1 mouse_genomes_project 17 28840960 28851372 + Cmtr1 protein_coding processed_transcript MGP_CASTEiJ_T0046451.1 MGP_CASTEiJ_G0022696.1 mouse_genomes_project 17 28841690 28846449 + Cmtr1 protein_coding processed_transcript MGP_CASTEiJ_T0046452.1 MGP_CASTEiJ_G0022696.1 mouse_genomes_project 17 28842669 28851476 + Cmtr1 protein_coding retained_intron MGP_CASTEiJ_T0046453.1 MGP_CASTEiJ_G0022696.1 mouse_genomes_project 17 28846315 28851458 + Cmtr1 protein_coding retained_intron MGP_CASTEiJ_T0046454.1 MGP_CASTEiJ_G0022696.1 mouse_genomes_project 17 28847574 28864812 + Cmtr1 protein_coding retained_intron MGP_CASTEiJ_T0045494.1 MGP_CASTEiJ_G0022431.1 mouse_genomes_project 17 15650052 15695202 + protein_coding processed_transcript MGP_CASTEiJ_T0045496.1 MGP_CASTEiJ_G0022431.1 mouse_genomes_project 17 15650116 15695099 + MGP_CASTEiJ_P0045496 protein_coding protein_coding MGP_CASTEiJ_T0047440.1 MGP_CASTEiJ_G0022930.1 mouse_genomes_project 17 37958808 37960105 - MGP_CASTEiJ_P0047440 protein_coding protein_coding MGP_CASTEiJ_T0045343.1 MGP_CASTEiJ_G0022388.1 mouse_genomes_project 17 9727186 9825499 + MGP_CASTEiJ_P0045343 Agpat4 protein_coding protein_coding MGP_CASTEiJ_T0045344.1 MGP_CASTEiJ_G0022388.1 mouse_genomes_project 17 9727765 9836149 + MGP_CASTEiJ_P0045344 Agpat4 protein_coding protein_coding MGP_CASTEiJ_T0045345.1 MGP_CASTEiJ_G0022388.1 mouse_genomes_project 17 9727810 9750997 + Agpat4 protein_coding processed_transcript MGP_CASTEiJ_T0045346.1 MGP_CASTEiJ_G0022388.1 mouse_genomes_project 17 9744517 9825150 + MGP_CASTEiJ_P0045346 Agpat4 protein_coding protein_coding MGP_CASTEiJ_T0045347.1 MGP_CASTEiJ_G0022388.1 mouse_genomes_project 17 9763067 9835598 + MGP_CASTEiJ_P0045347 Agpat4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045348.1 MGP_CASTEiJ_G0022388.1 mouse_genomes_project 17 9831646 9835772 + Agpat4 protein_coding retained_intron MGP_CASTEiJ_T0047955.1 MGP_CASTEiJ_G0023101.1 mouse_genomes_project 17 56939419 56940190 + MGP_CASTEiJ_P0047955 protein_coding protein_coding MGP_CASTEiJ_T0102150.1 MGP_CASTEiJ_G0038875.1 mouse_genomes_project 17 35242852 35243844 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045520.1 MGP_CASTEiJ_G0022455.1 mouse_genomes_project 17 18799415 18800336 + MGP_CASTEiJ_P0045520 Vmn1r229 protein_coding protein_coding MGP_CASTEiJ_T0045884.1 MGP_CASTEiJ_G0022565.1 mouse_genomes_project 17 23797189 23801670 + MGP_CASTEiJ_P0045884 Ptx4 protein_coding protein_coding MGP_CASTEiJ_T0047512.1 MGP_CASTEiJ_G0022983.1 mouse_genomes_project 17 44430044 44468920 + MGP_CASTEiJ_P0047512 Pla2g7 protein_coding protein_coding MGP_CASTEiJ_T0047513.1 MGP_CASTEiJ_G0022983.1 mouse_genomes_project 17 44430215 44481794 + MGP_CASTEiJ_P0047513 Pla2g7 protein_coding protein_coding MGP_CASTEiJ_T0047514.1 MGP_CASTEiJ_G0022983.1 mouse_genomes_project 17 44430421 44463183 + MGP_CASTEiJ_P0047514 Pla2g7 protein_coding protein_coding MGP_CASTEiJ_T0047515.1 MGP_CASTEiJ_G0022983.1 mouse_genomes_project 17 44430581 44458057 + Pla2g7 protein_coding processed_transcript MGP_CASTEiJ_T0047516.1 MGP_CASTEiJ_G0022983.1 mouse_genomes_project 17 44430619 44476680 + MGP_CASTEiJ_P0047516 Pla2g7 protein_coding protein_coding MGP_CASTEiJ_T0047517.1 MGP_CASTEiJ_G0022983.1 mouse_genomes_project 17 44430662 44477055 + Pla2g7 protein_coding retained_intron MGP_CASTEiJ_T0047492.1 MGP_CASTEiJ_G0022972.1 mouse_genomes_project 17 41664657 41693455 + MGP_CASTEiJ_P0047492 Mut protein_coding protein_coding MGP_CASTEiJ_T0047493.1 MGP_CASTEiJ_G0022972.1 mouse_genomes_project 17 41664710 41692337 + MGP_CASTEiJ_P0047493 Mut protein_coding unknown_likely_coding MGP_CASTEiJ_T0048200.1 MGP_CASTEiJ_G0023194.1 mouse_genomes_project 17 68889519 68930273 - MGP_CASTEiJ_P0048200 Themis3 protein_coding protein_coding MGP_CASTEiJ_T0045571.1 MGP_CASTEiJ_G0022483.1 mouse_genomes_project 17 21309092 21330649 - MGP_CASTEiJ_P0045571 Zfp945 protein_coding protein_coding MGP_CASTEiJ_T0045572.1 MGP_CASTEiJ_G0022483.1 mouse_genomes_project 17 21311424 21325216 - Zfp945 protein_coding retained_intron MGP_CASTEiJ_T0045573.1 MGP_CASTEiJ_G0022483.1 mouse_genomes_project 17 21311424 21330649 - MGP_CASTEiJ_P0045573 Zfp945 protein_coding protein_coding MGP_CASTEiJ_T0045574.1 MGP_CASTEiJ_G0022483.1 mouse_genomes_project 17 21314850 21330618 - MGP_CASTEiJ_P0045574 Zfp945 protein_coding protein_coding MGP_CASTEiJ_T0045575.1 MGP_CASTEiJ_G0022483.1 mouse_genomes_project 17 21325223 21330649 - Zfp945 protein_coding retained_intron MGP_CASTEiJ_T0046767.1 MGP_CASTEiJ_G0022775.1 mouse_genomes_project 17 33559868 33561419 - MGP_CASTEiJ_P0046767 B3galt4 protein_coding protein_coding MGP_CASTEiJ_T0102153.1 MGP_CASTEiJ_G0038878.1 mouse_genomes_project 17 36284237 36312922 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0006733.1 MGP_CASTEiJ_G0005560.1 mouse_genomes_project 17 24542371 24729358 + lincRNA lincRNA MGP_CASTEiJ_T0045273.1 MGP_CASTEiJ_G0022366.1 mouse_genomes_project 17 4944696 5010823 - MGP_CASTEiJ_P0045273 Fndc1 protein_coding protein_coding MGP_CASTEiJ_T0045274.1 MGP_CASTEiJ_G0022366.1 mouse_genomes_project 17 4952935 4967345 - Fndc1 protein_coding processed_transcript MGP_CASTEiJ_T0045275.1 MGP_CASTEiJ_G0022366.1 mouse_genomes_project 17 4967627 4973789 - Fndc1 protein_coding retained_intron MGP_CASTEiJ_T0045276.1 MGP_CASTEiJ_G0022366.1 mouse_genomes_project 17 4988243 5032697 - MGP_CASTEiJ_P0045276 Fndc1 protein_coding protein_coding MGP_CASTEiJ_T0045277.1 MGP_CASTEiJ_G0022366.1 mouse_genomes_project 17 5005944 5032697 - MGP_CASTEiJ_P0045277 Fndc1 protein_coding protein_coding MGP_CASTEiJ_T0009911.1 MGP_CASTEiJ_G0008099.1 mouse_genomes_project 17 24578781 24578845 - Mir3082 miRNA miRNA MGP_CASTEiJ_T0047307.1 MGP_CASTEiJ_G0022881.1 mouse_genomes_project 17 36068237 36083504 - MGP_CASTEiJ_P0047307 Prr3 protein_coding protein_coding MGP_CASTEiJ_T0047308.1 MGP_CASTEiJ_G0022881.1 mouse_genomes_project 17 36072266 36082918 - MGP_CASTEiJ_P0047308 Prr3 protein_coding protein_coding MGP_CASTEiJ_T0047309.1 MGP_CASTEiJ_G0022881.1 mouse_genomes_project 17 36075210 36082840 - MGP_CASTEiJ_P0047309 Prr3 protein_coding protein_coding MGP_CASTEiJ_T0047310.1 MGP_CASTEiJ_G0022881.1 mouse_genomes_project 17 36075446 36083200 - MGP_CASTEiJ_P0047310 Prr3 protein_coding protein_coding MGP_CASTEiJ_T0047311.1 MGP_CASTEiJ_G0022881.1 mouse_genomes_project 17 36075614 36083200 - MGP_CASTEiJ_P0047311 Prr3 protein_coding protein_coding MGP_CASTEiJ_T0047312.1 MGP_CASTEiJ_G0022881.1 mouse_genomes_project 17 36075869 36083071 - MGP_CASTEiJ_P0047312 Prr3 protein_coding protein_coding MGP_CASTEiJ_T0047313.1 MGP_CASTEiJ_G0022881.1 mouse_genomes_project 17 36075980 36082691 - Prr3 protein_coding retained_intron MGP_CASTEiJ_T0048387.1 MGP_CASTEiJ_G0023249.1 mouse_genomes_project 17 81968857 81988092 - MGP_CASTEiJ_P0048387 Cebpz protein_coding protein_coding MGP_CASTEiJ_T0048265.1 MGP_CASTEiJ_G0023209.1 mouse_genomes_project 17 73735661 73792162 + Lpin2 protein_coding retained_intron MGP_CASTEiJ_T0048266.1 MGP_CASTEiJ_G0023209.1 mouse_genomes_project 17 73736651 73789309 + MGP_CASTEiJ_P0048266 Lpin2 protein_coding protein_coding MGP_CASTEiJ_T0048267.1 MGP_CASTEiJ_G0023209.1 mouse_genomes_project 17 73736818 73778719 + Lpin2 protein_coding retained_intron MGP_CASTEiJ_T0048268.1 MGP_CASTEiJ_G0023209.1 mouse_genomes_project 17 73760655 73786744 + MGP_CASTEiJ_P0048268 Lpin2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048269.1 MGP_CASTEiJ_G0023209.1 mouse_genomes_project 17 73760777 73809529 + MGP_CASTEiJ_P0048269 Lpin2 protein_coding protein_coding MGP_CASTEiJ_T0048270.1 MGP_CASTEiJ_G0023209.1 mouse_genomes_project 17 73786671 73795205 + Lpin2 protein_coding retained_intron MGP_CASTEiJ_T0048271.1 MGP_CASTEiJ_G0023209.1 mouse_genomes_project 17 73795766 73796501 + Lpin2 protein_coding retained_intron MGP_CASTEiJ_T0048272.1 MGP_CASTEiJ_G0023209.1 mouse_genomes_project 17 73795776 73803811 + MGP_CASTEiJ_P0048272 Lpin2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048273.1 MGP_CASTEiJ_G0023209.1 mouse_genomes_project 17 73797763 73802000 + Lpin2 protein_coding retained_intron MGP_CASTEiJ_T0048274.1 MGP_CASTEiJ_G0023209.1 mouse_genomes_project 17 73797864 73800654 + Lpin2 protein_coding retained_intron MGP_CASTEiJ_T0048275.1 MGP_CASTEiJ_G0023209.1 mouse_genomes_project 17 73799572 73803233 + Lpin2 protein_coding retained_intron MGP_CASTEiJ_T0048276.1 MGP_CASTEiJ_G0023209.1 mouse_genomes_project 17 73803389 73804703 + Lpin2 protein_coding retained_intron MGP_CASTEiJ_T0047178.1 MGP_CASTEiJ_G0022861.1 mouse_genomes_project 17 35603650 35609193 + MGP_CASTEiJ_P0047178 Cdsn protein_coding protein_coding MGP_CASTEiJ_T0048361.1 MGP_CASTEiJ_G0023237.1 mouse_genomes_project 17 78272288 78373129 + MGP_CASTEiJ_P0048361 Rasgrp3 protein_coding protein_coding MGP_CASTEiJ_T0048362.1 MGP_CASTEiJ_G0023237.1 mouse_genomes_project 17 78304777 78373129 + MGP_CASTEiJ_P0048362 Rasgrp3 protein_coding protein_coding MGP_CASTEiJ_T0047664.1 MGP_CASTEiJ_G0023016.1 mouse_genomes_project 17 47354254 47357377 + MGP_CASTEiJ_P0047664 Lrrc73 protein_coding protein_coding MGP_CASTEiJ_T0100770.1 MGP_CASTEiJ_G0037683.1 mouse_genomes_project 17 64591028 64591162 - Gm25800 snoRNA snoRNA MGP_CASTEiJ_T0047495.1 MGP_CASTEiJ_G0022974.1 mouse_genomes_project 17 43311204 43368558 - MGP_CASTEiJ_P0047495 Opn5 protein_coding protein_coding MGP_CASTEiJ_T0003647.1 MGP_CASTEiJ_G0003289.1 mouse_genomes_project 17 46622268 46624523 + Gm17080 antisense antisense MGP_CASTEiJ_T0045353.1 MGP_CASTEiJ_G0022393.1 mouse_genomes_project 17 10294793 10326474 - MGP_CASTEiJ_P0045353 Slc22a1 protein_coding protein_coding MGP_CASTEiJ_T0102162.1 MGP_CASTEiJ_G0038887.1 mouse_genomes_project 17 36682127 36683319 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0046802.1 MGP_CASTEiJ_G0022781.1 mouse_genomes_project 17 33700617 33728008 + MGP_CASTEiJ_P0046802 Col11a2 protein_coding protein_coding MGP_CASTEiJ_T0046803.1 MGP_CASTEiJ_G0022781.1 mouse_genomes_project 17 33700617 33727565 + MGP_CASTEiJ_P0046803 Col11a2 protein_coding protein_coding MGP_CASTEiJ_T0046804.1 MGP_CASTEiJ_G0022781.1 mouse_genomes_project 17 33700617 33727565 + MGP_CASTEiJ_P0046804 Col11a2 protein_coding protein_coding MGP_CASTEiJ_T0046805.1 MGP_CASTEiJ_G0022781.1 mouse_genomes_project 17 33700617 33713757 + MGP_CASTEiJ_P0046805 Col11a2 protein_coding protein_coding MGP_CASTEiJ_T0046806.1 MGP_CASTEiJ_G0022781.1 mouse_genomes_project 17 33709502 33721272 + MGP_CASTEiJ_P0046806 Col11a2 protein_coding protein_coding MGP_CASTEiJ_T0046807.1 MGP_CASTEiJ_G0022781.1 mouse_genomes_project 17 33713546 33715569 + Col11a2 protein_coding processed_transcript MGP_CASTEiJ_T0046808.1 MGP_CASTEiJ_G0022781.1 mouse_genomes_project 17 33716320 33717674 + Col11a2 protein_coding retained_intron MGP_CASTEiJ_T0046809.1 MGP_CASTEiJ_G0022781.1 mouse_genomes_project 17 33723737 33726112 + Col11a2 protein_coding retained_intron MGP_CASTEiJ_T0047015.1 MGP_CASTEiJ_G0022824.1 mouse_genomes_project 17 34759772 34764448 + MGP_CASTEiJ_P0047015 Neu1 protein_coding protein_coding MGP_CASTEiJ_T0047016.1 MGP_CASTEiJ_G0022824.1 mouse_genomes_project 17 34759833 34764478 + Neu1 protein_coding retained_intron MGP_CASTEiJ_T0047017.1 MGP_CASTEiJ_G0022824.1 mouse_genomes_project 17 34760382 34761281 + Neu1 protein_coding retained_intron MGP_CASTEiJ_T0047891.1 MGP_CASTEiJ_G0023082.1 mouse_genomes_project 17 49814001 49827410 + MGP_CASTEiJ_P0047891 Unc5cl protein_coding protein_coding MGP_CASTEiJ_T0047892.1 MGP_CASTEiJ_G0023082.1 mouse_genomes_project 17 49821481 49827404 + MGP_CASTEiJ_P0047892 Unc5cl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047893.1 MGP_CASTEiJ_G0023082.1 mouse_genomes_project 17 49821506 49911528 + MGP_CASTEiJ_P0047893 Unc5cl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047894.1 MGP_CASTEiJ_G0023082.1 mouse_genomes_project 17 49821512 49823785 + MGP_CASTEiJ_P0047894 Unc5cl protein_coding protein_coding MGP_CASTEiJ_T0047895.1 MGP_CASTEiJ_G0023082.1 mouse_genomes_project 17 49821530 49827402 + MGP_CASTEiJ_P0047895 Unc5cl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047896.1 MGP_CASTEiJ_G0023082.1 mouse_genomes_project 17 49821550 49911421 + MGP_CASTEiJ_P0047896 Unc5cl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047146.1 MGP_CASTEiJ_G0022854.1 mouse_genomes_project 17 35083403 35086682 + MGP_CASTEiJ_P0047146 Gm16181 protein_coding protein_coding MGP_CASTEiJ_T0047508.1 MGP_CASTEiJ_G0022981.1 mouse_genomes_project 17 44320021 44347415 - MGP_CASTEiJ_P0047508 Mep1a protein_coding protein_coding MGP_CASTEiJ_T0047509.1 MGP_CASTEiJ_G0022981.1 mouse_genomes_project 17 44342498 44345050 - Mep1a protein_coding processed_transcript MGP_CASTEiJ_T0047510.1 MGP_CASTEiJ_G0022981.1 mouse_genomes_project 17 44346901 44347391 - Mep1a protein_coding retained_intron MGP_CASTEiJ_T0046705.1 MGP_CASTEiJ_G0022765.1 mouse_genomes_project 17 33430105 33443300 + MGP_CASTEiJ_P0046705 Kank3 protein_coding protein_coding MGP_CASTEiJ_T0046706.1 MGP_CASTEiJ_G0022765.1 mouse_genomes_project 17 33430108 33443299 + MGP_CASTEiJ_P0046706 Kank3 protein_coding protein_coding MGP_CASTEiJ_T0046707.1 MGP_CASTEiJ_G0022765.1 mouse_genomes_project 17 33430108 33443296 + MGP_CASTEiJ_P0046707 Kank3 protein_coding protein_coding MGP_CASTEiJ_T0046708.1 MGP_CASTEiJ_G0022765.1 mouse_genomes_project 17 33430114 33442540 + Kank3 protein_coding retained_intron MGP_CASTEiJ_T0046710.1 MGP_CASTEiJ_G0022765.1 mouse_genomes_project 17 33442211 33442657 + Kank3 protein_coding retained_intron MGP_CASTEiJ_T0046711.1 MGP_CASTEiJ_G0022765.1 mouse_genomes_project 17 33442524 33443299 + MGP_CASTEiJ_P0046711 Kank3 protein_coding protein_coding MGP_CASTEiJ_T0100771.1 MGP_CASTEiJ_G0037684.1 mouse_genomes_project 17 65377360 65377477 + Gm24730 snoRNA snoRNA MGP_CASTEiJ_T0045977.1 MGP_CASTEiJ_G0022589.1 mouse_genomes_project 17 24474192 24488036 + MGP_CASTEiJ_P0045977 Mslnl protein_coding protein_coding MGP_CASTEiJ_T0047259.1 MGP_CASTEiJ_G0022876.1 mouse_genomes_project 17 35982663 35987851 - MGP_CASTEiJ_P0047259 2310061I04Rik protein_coding protein_coding MGP_CASTEiJ_T0047260.1 MGP_CASTEiJ_G0022876.1 mouse_genomes_project 17 35982663 35987541 - MGP_CASTEiJ_P0047260 2310061I04Rik protein_coding protein_coding MGP_CASTEiJ_T0047261.1 MGP_CASTEiJ_G0022876.1 mouse_genomes_project 17 35982669 35985737 - MGP_CASTEiJ_P0047261 2310061I04Rik protein_coding protein_coding MGP_CASTEiJ_T0047262.1 MGP_CASTEiJ_G0022876.1 mouse_genomes_project 17 35982673 35987532 - MGP_CASTEiJ_P0047262 2310061I04Rik protein_coding protein_coding MGP_CASTEiJ_T0047263.1 MGP_CASTEiJ_G0022876.1 mouse_genomes_project 17 35982817 35986344 - MGP_CASTEiJ_P0047263 2310061I04Rik protein_coding protein_coding MGP_CASTEiJ_T0047264.1 MGP_CASTEiJ_G0022876.1 mouse_genomes_project 17 35985467 35987494 - MGP_CASTEiJ_P0047264 2310061I04Rik protein_coding protein_coding MGP_CASTEiJ_T0047265.1 MGP_CASTEiJ_G0022876.1 mouse_genomes_project 17 35986194 35987029 - 2310061I04Rik protein_coding processed_transcript MGP_CASTEiJ_T0047266.1 MGP_CASTEiJ_G0022876.1 mouse_genomes_project 17 35986343 35987524 - MGP_CASTEiJ_P0047266 2310061I04Rik protein_coding protein_coding MGP_CASTEiJ_T0047267.1 MGP_CASTEiJ_G0022876.1 mouse_genomes_project 17 35986696 35987733 - 2310061I04Rik protein_coding processed_transcript MGP_CASTEiJ_T0048570.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 93850650 94988047 - MGP_CASTEiJ_P0048570 Nrxn1 protein_coding protein_coding MGP_CASTEiJ_T0048571.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 93850663 94994067 - MGP_CASTEiJ_P0048571 Nrxn1 protein_coding protein_coding MGP_CASTEiJ_T0048572.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 93852453 93906990 - MGP_CASTEiJ_P0048572 Nrxn1 protein_coding protein_coding MGP_CASTEiJ_T0048573.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 93852455 94988055 - MGP_CASTEiJ_P0048573 Nrxn1 protein_coding protein_coding MGP_CASTEiJ_T0048574.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 93852841 94297561 - MGP_CASTEiJ_P0048574 Nrxn1 protein_coding protein_coding MGP_CASTEiJ_T0048575.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 93853312 93906994 - MGP_CASTEiJ_P0048575 Nrxn1 protein_coding protein_coding MGP_CASTEiJ_T0048576.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 93853339 94297575 - MGP_CASTEiJ_P0048576 Nrxn1 protein_coding protein_coding MGP_CASTEiJ_T0048577.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 93853712 94987866 - MGP_CASTEiJ_P0048577 Nrxn1 protein_coding protein_coding MGP_CASTEiJ_T0048578.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 93853896 93906734 - Nrxn1 protein_coding processed_transcript MGP_CASTEiJ_T0048579.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 93853922 94987866 - MGP_CASTEiJ_P0048579 Nrxn1 protein_coding protein_coding MGP_CASTEiJ_T0048580.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 93853936 94993729 - MGP_CASTEiJ_P0048580 Nrxn1 protein_coding protein_coding MGP_CASTEiJ_T0048581.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 93853936 94297639 - MGP_CASTEiJ_P0048581 Nrxn1 protein_coding protein_coding MGP_CASTEiJ_T0048582.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 93854361 94026471 - MGP_CASTEiJ_P0048582 Nrxn1 protein_coding protein_coding MGP_CASTEiJ_T0048583.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 93979151 94181658 - Nrxn1 protein_coding processed_transcript MGP_CASTEiJ_T0048584.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 94026336 94993799 - Nrxn1 protein_coding retained_intron MGP_CASTEiJ_T0048585.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 94026336 94296511 - Nrxn1 protein_coding retained_intron MGP_CASTEiJ_T0048586.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 94194737 94438523 - MGP_CASTEiJ_P0048586 Nrxn1 protein_coding protein_coding MGP_CASTEiJ_T0048587.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 94194978 94438672 - MGP_CASTEiJ_P0048587 Nrxn1 protein_coding protein_coding MGP_CASTEiJ_T0048588.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 94295333 94298262 - Nrxn1 protein_coding retained_intron MGP_CASTEiJ_T0048589.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 94383324 94987623 - Nrxn1 protein_coding processed_transcript MGP_CASTEiJ_T0048590.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 94408987 94558958 - MGP_CASTEiJ_P0048590 Nrxn1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048591.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 94439754 94480066 - MGP_CASTEiJ_P0048591 Nrxn1 protein_coding protein_coding MGP_CASTEiJ_T0048592.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 94440032 94555063 - MGP_CASTEiJ_P0048592 Nrxn1 protein_coding protein_coding MGP_CASTEiJ_T0048593.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 94468818 94479869 - Nrxn1 protein_coding retained_intron MGP_CASTEiJ_T0048594.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 94554210 94993767 - Nrxn1 protein_coding retained_intron MGP_CASTEiJ_T0048595.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 94557464 94993787 - Nrxn1 protein_coding retained_intron MGP_CASTEiJ_T0048596.1 MGP_CASTEiJ_G0023320.1 mouse_genomes_project 17 94984588 94993749 - Nrxn1 protein_coding retained_intron MGP_CASTEiJ_T0045216.1 MGP_CASTEiJ_G0022348.1 mouse_genomes_project 17 147832 211478 + MGP_CASTEiJ_P0045216 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006815.1 MGP_CASTEiJ_G0005620.1 mouse_genomes_project 17 91148608 91160492 + Gm28676 lincRNA lincRNA MGP_CASTEiJ_T0006767.1 MGP_CASTEiJ_G0005587.1 mouse_genomes_project 17 35815921 35836857 - Gm20442 lincRNA lincRNA MGP_CASTEiJ_T0047527.1 MGP_CASTEiJ_G0022988.1 mouse_genomes_project 17 44997449 45005155 + MGP_CASTEiJ_P0047527 Enpp5 protein_coding protein_coding MGP_CASTEiJ_T0047528.1 MGP_CASTEiJ_G0022988.1 mouse_genomes_project 17 44997481 45005147 + MGP_CASTEiJ_P0047528 Enpp5 protein_coding protein_coding MGP_CASTEiJ_T0047529.1 MGP_CASTEiJ_G0022988.1 mouse_genomes_project 17 44997515 45005155 + MGP_CASTEiJ_P0047529 Enpp5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012901.1 MGP_CASTEiJ_G0011064.1 mouse_genomes_project 17 75844854 75845346 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012850.1 MGP_CASTEiJ_G0011013.1 mouse_genomes_project 17 34071002 34071289 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046172.1 MGP_CASTEiJ_G0022632.1 mouse_genomes_project 17 25700670 25703330 - MGP_CASTEiJ_P0046172 protein_coding protein_coding MGP_CASTEiJ_T0012881.1 MGP_CASTEiJ_G0011044.1 mouse_genomes_project 17 55421137 55422132 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012884.1 MGP_CASTEiJ_G0011047.1 mouse_genomes_project 17 55618371 55618717 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006777.1 MGP_CASTEiJ_G0005596.1 mouse_genomes_project 17 47552105 47958165 + lincRNA lincRNA MGP_CASTEiJ_T0011100.1 MGP_CASTEiJ_G0009288.1 mouse_genomes_project 17 50071768 50072026 - Gm23642 misc_RNA misc_RNA MGP_CASTEiJ_T0012860.1 MGP_CASTEiJ_G0011023.1 mouse_genomes_project 17 36610426 36610999 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006739.1 MGP_CASTEiJ_G0005566.1 mouse_genomes_project 17 26710635 26719129 + Gm15458 lincRNA lincRNA MGP_CASTEiJ_T0048144.1 MGP_CASTEiJ_G0023180.1 mouse_genomes_project 17 67070168 67073722 - MGP_CASTEiJ_P0048144 4930583I09Rik protein_coding protein_coding MGP_CASTEiJ_T0045508.1 MGP_CASTEiJ_G0022443.1 mouse_genomes_project 17 18045722 18046680 - MGP_CASTEiJ_P0045508 protein_coding protein_coding MGP_CASTEiJ_T0046649.1 MGP_CASTEiJ_G0022754.1 mouse_genomes_project 17 32950658 32982494 - MGP_CASTEiJ_P0046649 Zfp81 protein_coding protein_coding MGP_CASTEiJ_T0009936.1 MGP_CASTEiJ_G0008124.1 mouse_genomes_project 17 35951765 35951861 - Gm28033 miRNA miRNA MGP_CASTEiJ_T0011107.1 MGP_CASTEiJ_G0009295.1 mouse_genomes_project 17 89108637 89108860 + Gm27801 misc_RNA misc_RNA MGP_CASTEiJ_T0045954.1 MGP_CASTEiJ_G0022584.1 mouse_genomes_project 17 24291837 24296612 - MGP_CASTEiJ_P0045954 Sox8 protein_coding protein_coding MGP_CASTEiJ_T0045955.1 MGP_CASTEiJ_G0022584.1 mouse_genomes_project 17 24293918 24296140 - MGP_CASTEiJ_P0045955 Sox8 protein_coding protein_coding MGP_CASTEiJ_T0045956.1 MGP_CASTEiJ_G0022584.1 mouse_genomes_project 17 24294637 24296612 - MGP_CASTEiJ_P0045956 Sox8 protein_coding protein_coding MGP_CASTEiJ_T0045334.1 MGP_CASTEiJ_G0022387.1 mouse_genomes_project 17 8415764 9149352 + Park2 protein_coding retained_intron MGP_CASTEiJ_T0045335.1 MGP_CASTEiJ_G0022387.1 mouse_genomes_project 17 8415764 9149352 + Park2 protein_coding retained_intron MGP_CASTEiJ_T0045336.1 MGP_CASTEiJ_G0022387.1 mouse_genomes_project 17 8415764 9674182 + MGP_CASTEiJ_P0045336 Park2 protein_coding protein_coding MGP_CASTEiJ_T0045337.1 MGP_CASTEiJ_G0022387.1 mouse_genomes_project 17 8415771 8534308 + Park2 protein_coding processed_transcript MGP_CASTEiJ_T0045338.1 MGP_CASTEiJ_G0022387.1 mouse_genomes_project 17 8639476 9081788 + MGP_CASTEiJ_P0045338 Park2 protein_coding protein_coding MGP_CASTEiJ_T0045339.1 MGP_CASTEiJ_G0022387.1 mouse_genomes_project 17 8872748 9209225 + MGP_CASTEiJ_P0045339 Park2 protein_coding protein_coding MGP_CASTEiJ_T0045340.1 MGP_CASTEiJ_G0022387.1 mouse_genomes_project 17 9043686 9674184 + MGP_CASTEiJ_P0045340 Park2 protein_coding protein_coding MGP_CASTEiJ_T0045341.1 MGP_CASTEiJ_G0022387.1 mouse_genomes_project 17 9450258 9474644 + Park2 protein_coding processed_transcript MGP_CASTEiJ_T0045342.1 MGP_CASTEiJ_G0022387.1 mouse_genomes_project 17 9635130 9674179 + Park2 protein_coding processed_transcript MGP_CASTEiJ_T0102167.1 MGP_CASTEiJ_G0038892.1 mouse_genomes_project 17 36782953 36783100 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0047996.1 MGP_CASTEiJ_G0023122.1 mouse_genomes_project 17 57908834 57926247 - MGP_CASTEiJ_P0047996 Sema6b protein_coding protein_coding MGP_CASTEiJ_T0047997.1 MGP_CASTEiJ_G0023122.1 mouse_genomes_project 17 57908834 57919762 - MGP_CASTEiJ_P0047997 Sema6b protein_coding protein_coding MGP_CASTEiJ_T0047848.1 MGP_CASTEiJ_G0023069.1 mouse_genomes_project 17 49427565 49489966 - MGP_CASTEiJ_P0047848 protein_coding protein_coding MGP_CASTEiJ_T0047849.1 MGP_CASTEiJ_G0023069.1 mouse_genomes_project 17 49427566 49489979 - MGP_CASTEiJ_P0047849 protein_coding protein_coding MGP_CASTEiJ_T0047851.1 MGP_CASTEiJ_G0023069.1 mouse_genomes_project 17 49477026 49489683 - MGP_CASTEiJ_P0047851 protein_coding unknown_likely_coding MGP_CASTEiJ_T0046480.1 MGP_CASTEiJ_G0022705.1 mouse_genomes_project 17 30438070 30498526 + MGP_CASTEiJ_P0046480 Abcg1 protein_coding protein_coding MGP_CASTEiJ_T0046481.1 MGP_CASTEiJ_G0022705.1 mouse_genomes_project 17 30438144 30481867 + Abcg1 protein_coding retained_intron MGP_CASTEiJ_T0047608.1 MGP_CASTEiJ_G0023006.1 mouse_genomes_project 17 46774265 46775246 - MGP_CASTEiJ_P0047608 1600014C23Rik protein_coding protein_coding MGP_CASTEiJ_T0046484.1 MGP_CASTEiJ_G0022708.1 mouse_genomes_project 17 30550056 30553714 - MGP_CASTEiJ_P0046484 Tff1 protein_coding protein_coding MGP_CASTEiJ_T0046671.1 MGP_CASTEiJ_G0022759.1 mouse_genomes_project 17 33230794 33233479 + MGP_CASTEiJ_P0046671 Zfp414 protein_coding protein_coding MGP_CASTEiJ_T0046672.1 MGP_CASTEiJ_G0022759.1 mouse_genomes_project 17 33230794 33233416 + MGP_CASTEiJ_P0046672 Zfp414 protein_coding protein_coding MGP_CASTEiJ_T0046673.1 MGP_CASTEiJ_G0022759.1 mouse_genomes_project 17 33230805 33232657 + Zfp414 protein_coding retained_intron MGP_CASTEiJ_T0046674.1 MGP_CASTEiJ_G0022759.1 mouse_genomes_project 17 33230825 33233164 + MGP_CASTEiJ_P0046674 Zfp414 protein_coding protein_coding MGP_CASTEiJ_T0046675.1 MGP_CASTEiJ_G0022759.1 mouse_genomes_project 17 33231133 33231708 + MGP_CASTEiJ_P0046675 Zfp414 protein_coding protein_coding MGP_CASTEiJ_T0046676.1 MGP_CASTEiJ_G0022759.1 mouse_genomes_project 17 33231900 33232471 + Zfp414 protein_coding retained_intron MGP_CASTEiJ_T0046677.1 MGP_CASTEiJ_G0022759.1 mouse_genomes_project 17 33232788 33233390 + Zfp414 protein_coding retained_intron MGP_CASTEiJ_T0046012.1 MGP_CASTEiJ_G0022600.1 mouse_genomes_project 17 24581881 24589166 - MGP_CASTEiJ_P0046012 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006799.1 MGP_CASTEiJ_G0005608.1 mouse_genomes_project 17 73412861 73414523 - Gm26510 lincRNA lincRNA MGP_CASTEiJ_T0006800.1 MGP_CASTEiJ_G0005608.1 mouse_genomes_project 17 73412864 73478663 - Gm26510 lincRNA lincRNA MGP_CASTEiJ_T0046123.1 MGP_CASTEiJ_G0022622.1 mouse_genomes_project 17 25015473 25061076 - MGP_CASTEiJ_P0046123 Fam234a protein_coding protein_coding MGP_CASTEiJ_T0046124.1 MGP_CASTEiJ_G0022622.1 mouse_genomes_project 17 25016365 25060994 - MGP_CASTEiJ_P0046124 Fam234a protein_coding protein_coding MGP_CASTEiJ_T0046125.1 MGP_CASTEiJ_G0022622.1 mouse_genomes_project 17 25017196 25019870 - MGP_CASTEiJ_P0046125 Fam234a protein_coding protein_coding MGP_CASTEiJ_T0046126.1 MGP_CASTEiJ_G0022622.1 mouse_genomes_project 17 25018842 25020599 - Fam234a protein_coding retained_intron MGP_CASTEiJ_T0046127.1 MGP_CASTEiJ_G0022622.1 mouse_genomes_project 17 25021924 25024195 - MGP_CASTEiJ_P0046127 Fam234a protein_coding protein_coding MGP_CASTEiJ_T0003628.1 MGP_CASTEiJ_G0003274.1 mouse_genomes_project 17 33746293 33757518 - BC051537 antisense antisense MGP_CASTEiJ_T0045497.1 MGP_CASTEiJ_G0022433.1 mouse_genomes_project 17 15683667 15684599 - MGP_CASTEiJ_P0045497 protein_coding protein_coding MGP_CASTEiJ_T0099528.1 MGP_CASTEiJ_G0036441.1 mouse_genomes_project 17 33343329 33343405 + Gm22943 snRNA snRNA MGP_CASTEiJ_T0045354.1 MGP_CASTEiJ_G0022394.1 mouse_genomes_project 17 10333026 10424055 - MGP_CASTEiJ_P0045354 Igf2r protein_coding protein_coding MGP_CASTEiJ_T0045355.1 MGP_CASTEiJ_G0022394.1 mouse_genomes_project 17 10350745 10353495 - MGP_CASTEiJ_P0045355 Igf2r protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045356.1 MGP_CASTEiJ_G0022394.1 mouse_genomes_project 17 10400863 10405282 - MGP_CASTEiJ_P0045356 Igf2r protein_coding protein_coding MGP_CASTEiJ_T0045892.1 MGP_CASTEiJ_G0022567.1 mouse_genomes_project 17 23844733 23854138 + MGP_CASTEiJ_P0045892 Ccdc154 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045893.1 MGP_CASTEiJ_G0022567.1 mouse_genomes_project 17 23844733 23854138 + MGP_CASTEiJ_P0045893 Ccdc154 protein_coding protein_coding MGP_CASTEiJ_T0045894.1 MGP_CASTEiJ_G0022567.1 mouse_genomes_project 17 23844736 23854136 + MGP_CASTEiJ_P0045894 Ccdc154 protein_coding protein_coding MGP_CASTEiJ_T0045895.1 MGP_CASTEiJ_G0022567.1 mouse_genomes_project 17 23845114 23854107 + MGP_CASTEiJ_P0045895 Ccdc154 protein_coding protein_coding MGP_CASTEiJ_T0046598.1 MGP_CASTEiJ_G0022731.1 mouse_genomes_project 17 31976166 32001903 + MGP_CASTEiJ_P0046598 Cyp4f39 protein_coding protein_coding MGP_CASTEiJ_T0046561.1 MGP_CASTEiJ_G0022725.1 mouse_genomes_project 17 31679594 31788596 - MGP_CASTEiJ_P0046561 Brd4 protein_coding protein_coding MGP_CASTEiJ_T0046562.1 MGP_CASTEiJ_G0022725.1 mouse_genomes_project 17 31679594 31788584 - MGP_CASTEiJ_P0046562 Brd4 protein_coding protein_coding MGP_CASTEiJ_T0046563.1 MGP_CASTEiJ_G0022725.1 mouse_genomes_project 17 31679596 31788584 - MGP_CASTEiJ_P0046563 Brd4 protein_coding protein_coding MGP_CASTEiJ_T0046564.1 MGP_CASTEiJ_G0022725.1 mouse_genomes_project 17 31691321 31696384 - MGP_CASTEiJ_P0046564 Brd4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0046565.1 MGP_CASTEiJ_G0022725.1 mouse_genomes_project 17 31698574 31788596 - MGP_CASTEiJ_P0046565 Brd4 protein_coding protein_coding MGP_CASTEiJ_T0046566.1 MGP_CASTEiJ_G0022725.1 mouse_genomes_project 17 31700348 31788604 - MGP_CASTEiJ_P0046566 Brd4 protein_coding protein_coding MGP_CASTEiJ_T0046567.1 MGP_CASTEiJ_G0022725.1 mouse_genomes_project 17 31707106 31789203 - MGP_CASTEiJ_P0046567 Brd4 protein_coding protein_coding MGP_CASTEiJ_T0046568.1 MGP_CASTEiJ_G0022725.1 mouse_genomes_project 17 31707141 31789158 - MGP_CASTEiJ_P0046568 Brd4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006760.1 MGP_CASTEiJ_G0005581.1 mouse_genomes_project 17 33685075 33685180 - Gm26940 lincRNA lincRNA MGP_CASTEiJ_T0047131.1 MGP_CASTEiJ_G0022848.1 mouse_genomes_project 17 35019754 35020622 - Aif1 protein_coding retained_intron MGP_CASTEiJ_T0047132.1 MGP_CASTEiJ_G0022848.1 mouse_genomes_project 17 35019754 35021637 - MGP_CASTEiJ_P0047132 Aif1 protein_coding protein_coding MGP_CASTEiJ_T0047133.1 MGP_CASTEiJ_G0022848.1 mouse_genomes_project 17 35019755 35024809 - MGP_CASTEiJ_P0047133 Aif1 protein_coding protein_coding MGP_CASTEiJ_T0047134.1 MGP_CASTEiJ_G0022848.1 mouse_genomes_project 17 35019757 35022096 - MGP_CASTEiJ_P0047134 Aif1 protein_coding protein_coding MGP_CASTEiJ_T0047135.1 MGP_CASTEiJ_G0022848.1 mouse_genomes_project 17 35019759 35024876 - Aif1 protein_coding processed_transcript MGP_CASTEiJ_T0047136.1 MGP_CASTEiJ_G0022848.1 mouse_genomes_project 17 35020286 35021449 - MGP_CASTEiJ_P0047136 Aif1 protein_coding protein_coding MGP_CASTEiJ_T0047137.1 MGP_CASTEiJ_G0022848.1 mouse_genomes_project 17 35021347 35024809 - Aif1 protein_coding retained_intron MGP_CASTEiJ_T0003654.1 MGP_CASTEiJ_G0003294.1 mouse_genomes_project 17 51354216 51355460 - Gm16554 antisense antisense MGP_CASTEiJ_T0045519.1 MGP_CASTEiJ_G0022454.1 mouse_genomes_project 17 18760363 18761806 - MGP_CASTEiJ_P0045519 Vmn1r228 protein_coding protein_coding MGP_CASTEiJ_T0016817.1 MGP_CASTEiJ_G0014661.1 mouse_genomes_project 17 33686129 33692546 - Gm20427 processed_transcript retained_intron MGP_CASTEiJ_T0045614.1 MGP_CASTEiJ_G0022497.1 mouse_genomes_project 17 22234192 22254136 - 1520401A03Rik protein_coding retained_intron MGP_CASTEiJ_T0045615.1 MGP_CASTEiJ_G0022497.1 mouse_genomes_project 17 22234192 22254136 - MGP_CASTEiJ_P0045615 1520401A03Rik protein_coding protein_coding MGP_CASTEiJ_T0045616.1 MGP_CASTEiJ_G0022497.1 mouse_genomes_project 17 22234192 22252079 - MGP_CASTEiJ_P0045616 1520401A03Rik protein_coding protein_coding MGP_CASTEiJ_T0045617.1 MGP_CASTEiJ_G0022497.1 mouse_genomes_project 17 22234758 22253293 - 1520401A03Rik protein_coding retained_intron MGP_CASTEiJ_T0045618.1 MGP_CASTEiJ_G0022497.1 mouse_genomes_project 17 22234758 22236040 - 1520401A03Rik protein_coding retained_intron MGP_CASTEiJ_T0006811.1 MGP_CASTEiJ_G0005619.1 mouse_genomes_project 17 90905281 90911985 - 4833418N02Rik lincRNA lincRNA MGP_CASTEiJ_T0006812.1 MGP_CASTEiJ_G0005619.1 mouse_genomes_project 17 90905316 90913107 - 4833418N02Rik lincRNA lincRNA MGP_CASTEiJ_T0006813.1 MGP_CASTEiJ_G0005619.1 mouse_genomes_project 17 90905643 90912793 - 4833418N02Rik lincRNA lincRNA MGP_CASTEiJ_T0006814.1 MGP_CASTEiJ_G0005619.1 mouse_genomes_project 17 90910542 90913072 - 4833418N02Rik lincRNA lincRNA MGP_CASTEiJ_T0047629.1 MGP_CASTEiJ_G0023010.1 mouse_genomes_project 17 47240479 47245778 - MGP_CASTEiJ_P0047629 Mad2l1bp protein_coding protein_coding MGP_CASTEiJ_T0046050.1 MGP_CASTEiJ_G0022606.1 mouse_genomes_project 17 24629449 24632124 - MGP_CASTEiJ_P0046050 Wfikkn1 protein_coding protein_coding MGP_CASTEiJ_T0046051.1 MGP_CASTEiJ_G0022606.1 mouse_genomes_project 17 24630623 24632055 - MGP_CASTEiJ_P0046051 Wfikkn1 protein_coding protein_coding MGP_CASTEiJ_T0045260.1 MGP_CASTEiJ_G0022362.1 mouse_genomes_project 17 3316675 3349884 + Tulp4 protein_coding processed_transcript MGP_CASTEiJ_T0045261.1 MGP_CASTEiJ_G0022362.1 mouse_genomes_project 17 3332904 3335491 + Tulp4 protein_coding processed_transcript MGP_CASTEiJ_T0045262.1 MGP_CASTEiJ_G0022362.1 mouse_genomes_project 17 3348316 3349881 + Tulp4 protein_coding processed_transcript MGP_CASTEiJ_T0045263.1 MGP_CASTEiJ_G0022362.1 mouse_genomes_project 17 3349253 3563574 + MGP_CASTEiJ_P0045263 Tulp4 protein_coding protein_coding MGP_CASTEiJ_T0045264.1 MGP_CASTEiJ_G0022362.1 mouse_genomes_project 17 3390606 3435691 + MGP_CASTEiJ_P0045264 Tulp4 protein_coding protein_coding MGP_CASTEiJ_T0045265.1 MGP_CASTEiJ_G0022362.1 mouse_genomes_project 17 3390606 3563574 + MGP_CASTEiJ_P0045265 Tulp4 protein_coding protein_coding MGP_CASTEiJ_T0047018.1 MGP_CASTEiJ_G0022825.1 mouse_genomes_project 17 34802447 34802925 + MGP_CASTEiJ_P0047018 Gm20481 protein_coding protein_coding MGP_CASTEiJ_T0003626.1 MGP_CASTEiJ_G0003273.1 mouse_genomes_project 17 33525819 33526691 - Gm19412 antisense antisense MGP_CASTEiJ_T0003627.1 MGP_CASTEiJ_G0003273.1 mouse_genomes_project 17 33526114 33526823 - Gm19412 antisense antisense MGP_CASTEiJ_T0048058.1 MGP_CASTEiJ_G0023138.1 mouse_genomes_project 17 58451844 58490282 + MGP_CASTEiJ_P0048058 Catsperd protein_coding protein_coding MGP_CASTEiJ_T0047871.1 MGP_CASTEiJ_G0023078.1 mouse_genomes_project 17 49741176 49764457 - MGP_CASTEiJ_P0047871 Nfya protein_coding protein_coding MGP_CASTEiJ_T0047872.1 MGP_CASTEiJ_G0023078.1 mouse_genomes_project 17 49741177 49764601 - MGP_CASTEiJ_P0047872 Nfya protein_coding protein_coding MGP_CASTEiJ_T0047873.1 MGP_CASTEiJ_G0023078.1 mouse_genomes_project 17 49743274 49754789 - MGP_CASTEiJ_P0047873 Nfya protein_coding protein_coding MGP_CASTEiJ_T0047874.1 MGP_CASTEiJ_G0023078.1 mouse_genomes_project 17 49743350 49764425 - MGP_CASTEiJ_P0047874 Nfya protein_coding protein_coding MGP_CASTEiJ_T0047875.1 MGP_CASTEiJ_G0023078.1 mouse_genomes_project 17 49743378 49747495 - MGP_CASTEiJ_P0047875 Nfya protein_coding protein_coding MGP_CASTEiJ_T0047876.1 MGP_CASTEiJ_G0023078.1 mouse_genomes_project 17 49743493 49747731 - MGP_CASTEiJ_P0047876 Nfya protein_coding protein_coding MGP_CASTEiJ_T0047877.1 MGP_CASTEiJ_G0023078.1 mouse_genomes_project 17 49745153 49746416 - Nfya protein_coding retained_intron MGP_CASTEiJ_T0047878.1 MGP_CASTEiJ_G0023078.1 mouse_genomes_project 17 49746286 49753293 - MGP_CASTEiJ_P0047878 Nfya protein_coding protein_coding MGP_CASTEiJ_T0047879.1 MGP_CASTEiJ_G0023078.1 mouse_genomes_project 17 49746314 49764436 - MGP_CASTEiJ_P0047879 Nfya protein_coding protein_coding MGP_CASTEiJ_T0047880.1 MGP_CASTEiJ_G0023078.1 mouse_genomes_project 17 49747489 49750383 - Nfya protein_coding retained_intron MGP_CASTEiJ_T0047881.1 MGP_CASTEiJ_G0023078.1 mouse_genomes_project 17 49749691 49764383 - Nfya protein_coding retained_intron MGP_CASTEiJ_T0047882.1 MGP_CASTEiJ_G0023078.1 mouse_genomes_project 17 49752191 49764445 - Nfya protein_coding retained_intron MGP_CASTEiJ_T0045235.1 MGP_CASTEiJ_G0022358.1 mouse_genomes_project 17 3039335 3119391 + MGP_CASTEiJ_P0045235 Snx9 protein_coding protein_coding MGP_CASTEiJ_T0047897.1 MGP_CASTEiJ_G0023083.1 mouse_genomes_project 17 50331145 50506474 + MGP_CASTEiJ_P0047897 Lrfn2 protein_coding protein_coding MGP_CASTEiJ_T0047898.1 MGP_CASTEiJ_G0023083.1 mouse_genomes_project 17 50474972 50516557 + MGP_CASTEiJ_P0047898 Lrfn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045607.1 MGP_CASTEiJ_G0022493.1 mouse_genomes_project 17 22209918 22211550 + MGP_CASTEiJ_P0045607 Hcfc1r1 protein_coding protein_coding MGP_CASTEiJ_T0045608.1 MGP_CASTEiJ_G0022493.1 mouse_genomes_project 17 22209930 22211550 + MGP_CASTEiJ_P0045608 Hcfc1r1 protein_coding protein_coding MGP_CASTEiJ_T0045609.1 MGP_CASTEiJ_G0022493.1 mouse_genomes_project 17 22209949 22211497 + MGP_CASTEiJ_P0045609 Hcfc1r1 protein_coding protein_coding MGP_CASTEiJ_T0012896.1 MGP_CASTEiJ_G0011059.1 mouse_genomes_project 17 71858320 71859327 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045599.1 MGP_CASTEiJ_G0022492.1 mouse_genomes_project 17 22205132 22206162 - Thoc6 protein_coding retained_intron MGP_CASTEiJ_T0045600.1 MGP_CASTEiJ_G0022492.1 mouse_genomes_project 17 22205136 22210165 - Thoc6 protein_coding retained_intron MGP_CASTEiJ_T0045601.1 MGP_CASTEiJ_G0022492.1 mouse_genomes_project 17 22205136 22210205 - MGP_CASTEiJ_P0045601 Thoc6 protein_coding protein_coding MGP_CASTEiJ_T0045602.1 MGP_CASTEiJ_G0022492.1 mouse_genomes_project 17 22205136 22210165 - MGP_CASTEiJ_P0045602 Thoc6 protein_coding protein_coding MGP_CASTEiJ_T0045603.1 MGP_CASTEiJ_G0022492.1 mouse_genomes_project 17 22205315 22209928 - MGP_CASTEiJ_P0045603 Thoc6 protein_coding protein_coding MGP_CASTEiJ_T0045604.1 MGP_CASTEiJ_G0022492.1 mouse_genomes_project 17 22205315 22210152 - MGP_CASTEiJ_P0045604 Thoc6 protein_coding protein_coding MGP_CASTEiJ_T0045605.1 MGP_CASTEiJ_G0022492.1 mouse_genomes_project 17 22205718 22207027 - MGP_CASTEiJ_P0045605 Thoc6 protein_coding protein_coding MGP_CASTEiJ_T0045606.1 MGP_CASTEiJ_G0022492.1 mouse_genomes_project 17 22206839 22210194 - MGP_CASTEiJ_P0045606 Thoc6 protein_coding protein_coding MGP_CASTEiJ_T0048211.1 MGP_CASTEiJ_G0023199.1 mouse_genomes_project 17 70711051 70891750 + L3mbtl4 protein_coding retained_intron MGP_CASTEiJ_T0048212.1 MGP_CASTEiJ_G0023199.1 mouse_genomes_project 17 70711051 71066987 + MGP_CASTEiJ_P0048212 L3mbtl4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048213.1 MGP_CASTEiJ_G0023199.1 mouse_genomes_project 17 70711051 71078885 + MGP_CASTEiJ_P0048213 L3mbtl4 protein_coding protein_coding MGP_CASTEiJ_T0048214.1 MGP_CASTEiJ_G0023199.1 mouse_genomes_project 17 70711051 71224293 + MGP_CASTEiJ_P0048214 L3mbtl4 protein_coding protein_coding MGP_CASTEiJ_T0000959.1 MGP_CASTEiJ_G0000895.1 mouse_genomes_project 17 82915278 82932898 - TEC TEC MGP_CASTEiJ_T0100761.1 MGP_CASTEiJ_G0037674.1 mouse_genomes_project 17 34781216 34781282 - Snord52 snoRNA snoRNA MGP_CASTEiJ_T0047415.1 MGP_CASTEiJ_G0022908.1 mouse_genomes_project 17 37358608 37359654 - MGP_CASTEiJ_P0047415 Olfr90 protein_coding protein_coding MGP_CASTEiJ_T0011106.1 MGP_CASTEiJ_G0009294.1 mouse_genomes_project 17 89106931 89107019 + Gm27435 misc_RNA misc_RNA MGP_CASTEiJ_T0047805.1 MGP_CASTEiJ_G0023062.1 mouse_genomes_project 17 48898054 48908574 + MGP_CASTEiJ_P0047805 Frs3 protein_coding protein_coding MGP_CASTEiJ_T0047808.1 MGP_CASTEiJ_G0023062.1 mouse_genomes_project 17 48904257 48913319 + MGP_CASTEiJ_P0047808 Frs3 protein_coding protein_coding MGP_CASTEiJ_T0047809.1 MGP_CASTEiJ_G0023062.1 mouse_genomes_project 17 48904284 48906728 + Frs3 protein_coding processed_transcript MGP_CASTEiJ_T0047810.1 MGP_CASTEiJ_G0023062.1 mouse_genomes_project 17 48908581 48909903 + Frs3 protein_coding processed_transcript MGP_CASTEiJ_T0047811.1 MGP_CASTEiJ_G0023062.1 mouse_genomes_project 17 48911094 48913317 + Frs3 protein_coding processed_transcript MGP_CASTEiJ_T0046494.1 MGP_CASTEiJ_G0022713.1 mouse_genomes_project 17 30811178 30911033 + MGP_CASTEiJ_P0046494 Pde9a protein_coding protein_coding MGP_CASTEiJ_T0046495.1 MGP_CASTEiJ_G0022713.1 mouse_genomes_project 17 30811193 30910879 + MGP_CASTEiJ_P0046495 Pde9a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046496.1 MGP_CASTEiJ_G0022713.1 mouse_genomes_project 17 30811193 30910879 + MGP_CASTEiJ_P0046496 Pde9a protein_coding protein_coding MGP_CASTEiJ_T0046497.1 MGP_CASTEiJ_G0022713.1 mouse_genomes_project 17 30811193 30910879 + MGP_CASTEiJ_P0046497 Pde9a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046498.1 MGP_CASTEiJ_G0022713.1 mouse_genomes_project 17 30811198 30910882 + MGP_CASTEiJ_P0046498 Pde9a protein_coding protein_coding MGP_CASTEiJ_T0046499.1 MGP_CASTEiJ_G0022713.1 mouse_genomes_project 17 30811206 30910804 + MGP_CASTEiJ_P0046499 Pde9a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046500.1 MGP_CASTEiJ_G0022713.1 mouse_genomes_project 17 30811218 30910882 + MGP_CASTEiJ_P0046500 Pde9a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046501.1 MGP_CASTEiJ_G0022713.1 mouse_genomes_project 17 30811220 30906883 + Pde9a protein_coding retained_intron MGP_CASTEiJ_T0046502.1 MGP_CASTEiJ_G0022713.1 mouse_genomes_project 17 30811238 30890225 + MGP_CASTEiJ_P0046502 Pde9a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046503.1 MGP_CASTEiJ_G0022713.1 mouse_genomes_project 17 30863469 30894214 + MGP_CASTEiJ_P0046503 Pde9a protein_coding protein_coding MGP_CASTEiJ_T0046504.1 MGP_CASTEiJ_G0022713.1 mouse_genomes_project 17 30874554 30895277 + Pde9a protein_coding retained_intron MGP_CASTEiJ_T0046505.1 MGP_CASTEiJ_G0022713.1 mouse_genomes_project 17 30888362 30896783 + Pde9a protein_coding retained_intron MGP_CASTEiJ_T0046506.1 MGP_CASTEiJ_G0022713.1 mouse_genomes_project 17 30896710 30910864 + MGP_CASTEiJ_P0046506 Pde9a protein_coding protein_coding MGP_CASTEiJ_T0046507.1 MGP_CASTEiJ_G0022713.1 mouse_genomes_project 17 30906129 30910829 + Pde9a protein_coding processed_transcript MGP_CASTEiJ_T0047422.1 MGP_CASTEiJ_G0022915.1 mouse_genomes_project 17 37520467 37521518 + MGP_CASTEiJ_P0047422 Olfr96 protein_coding protein_coding MGP_CASTEiJ_T0045768.1 MGP_CASTEiJ_G0022536.1 mouse_genomes_project 17 23280121 23286259 + MGP_CASTEiJ_P0045768 Nthl1 protein_coding protein_coding MGP_CASTEiJ_T0048533.1 MGP_CASTEiJ_G0023307.1 mouse_genomes_project 17 91082141 91098074 - MGP_CASTEiJ_P0048533 Calm2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048534.1 MGP_CASTEiJ_G0023307.1 mouse_genomes_project 17 91083672 91098060 - MGP_CASTEiJ_P0048534 Calm2 protein_coding protein_coding MGP_CASTEiJ_T0048535.1 MGP_CASTEiJ_G0023307.1 mouse_genomes_project 17 91085153 91098114 - Calm2 protein_coding retained_intron MGP_CASTEiJ_T0047981.1 MGP_CASTEiJ_G0023115.1 mouse_genomes_project 17 57786148 57812479 - MGP_CASTEiJ_P0047981 Sh3gl1 protein_coding protein_coding MGP_CASTEiJ_T0048140.1 MGP_CASTEiJ_G0023179.1 mouse_genomes_project 17 66824720 66987000 + MGP_CASTEiJ_P0048140 Man2a1 protein_coding protein_coding MGP_CASTEiJ_T0048141.1 MGP_CASTEiJ_G0023179.1 mouse_genomes_project 17 66825622 66900317 + MGP_CASTEiJ_P0048141 Man2a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048142.1 MGP_CASTEiJ_G0023179.1 mouse_genomes_project 17 66946197 66947593 + Man2a1 protein_coding retained_intron MGP_CASTEiJ_T0048143.1 MGP_CASTEiJ_G0023179.1 mouse_genomes_project 17 66946410 66986730 + MGP_CASTEiJ_P0048143 Man2a1 protein_coding protein_coding MGP_CASTEiJ_T0048538.1 MGP_CASTEiJ_G0023310.1 mouse_genomes_project 17 91355028 91412234 + MGP_CASTEiJ_P0048538 Msh2 protein_coding protein_coding MGP_CASTEiJ_T0048539.1 MGP_CASTEiJ_G0023310.1 mouse_genomes_project 17 91355238 91364860 + Msh2 protein_coding retained_intron MGP_CASTEiJ_T0048540.1 MGP_CASTEiJ_G0023310.1 mouse_genomes_project 17 91355259 91398584 + Msh2 protein_coding retained_intron MGP_CASTEiJ_T0048541.1 MGP_CASTEiJ_G0023310.1 mouse_genomes_project 17 91355307 91372265 + MGP_CASTEiJ_P0048541 Msh2 protein_coding protein_coding MGP_CASTEiJ_T0048542.1 MGP_CASTEiJ_G0023310.1 mouse_genomes_project 17 91376889 91384406 + Msh2 protein_coding retained_intron MGP_CASTEiJ_T0048543.1 MGP_CASTEiJ_G0023310.1 mouse_genomes_project 17 91384243 91406175 + MGP_CASTEiJ_P0048543 Msh2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046647.1 MGP_CASTEiJ_G0022752.1 mouse_genomes_project 17 32858055 32872112 - MGP_CASTEiJ_P0046647 Zfp955b protein_coding protein_coding MGP_CASTEiJ_T0047726.1 MGP_CASTEiJ_G0023036.1 mouse_genomes_project 17 47825820 47841489 + Pex6 protein_coding retained_intron MGP_CASTEiJ_T0047727.1 MGP_CASTEiJ_G0023036.1 mouse_genomes_project 17 47825820 47841489 + MGP_CASTEiJ_P0047727 Pex6 protein_coding protein_coding MGP_CASTEiJ_T0047728.1 MGP_CASTEiJ_G0023036.1 mouse_genomes_project 17 47825833 47833309 + Pex6 protein_coding processed_transcript MGP_CASTEiJ_T0047729.1 MGP_CASTEiJ_G0023036.1 mouse_genomes_project 17 47836140 47837683 + Pex6 protein_coding retained_intron MGP_CASTEiJ_T0048322.1 MGP_CASTEiJ_G0023228.1 mouse_genomes_project 17 76958576 77064746 - MGP_CASTEiJ_P0048322 Memo1 protein_coding protein_coding MGP_CASTEiJ_T0047459.1 MGP_CASTEiJ_G0022947.1 mouse_genomes_project 17 38507456 38537613 + MGP_CASTEiJ_P0047459 protein_coding protein_coding MGP_CASTEiJ_T0006795.1 MGP_CASTEiJ_G0005605.1 mouse_genomes_project 17 71890645 71916090 - A930029G22Rik lincRNA lincRNA MGP_CASTEiJ_T0046863.1 MGP_CASTEiJ_G0022796.1 mouse_genomes_project 17 34000995 34015378 + MGP_CASTEiJ_P0046863 H2-Eb2 protein_coding protein_coding MGP_CASTEiJ_T0046145.1 MGP_CASTEiJ_G0022627.1 mouse_genomes_project 17 25347180 25350107 - MGP_CASTEiJ_P0046145 Dusp1 protein_coding protein_coding MGP_CASTEiJ_T0046146.1 MGP_CASTEiJ_G0022627.1 mouse_genomes_project 17 25347181 25350062 - Dusp1 protein_coding retained_intron MGP_CASTEiJ_T0046147.1 MGP_CASTEiJ_G0022627.1 mouse_genomes_project 17 25348103 25349311 - Dusp1 protein_coding retained_intron MGP_CASTEiJ_T0100757.1 MGP_CASTEiJ_G0037670.1 mouse_genomes_project 17 23381446 23381574 - Snora78 snoRNA snoRNA MGP_CASTEiJ_T0048149.1 MGP_CASTEiJ_G0023183.1 mouse_genomes_project 17 67891084 67895665 - MGP_CASTEiJ_P0048149 Txndc2 protein_coding protein_coding MGP_CASTEiJ_T0099536.1 MGP_CASTEiJ_G0036449.1 mouse_genomes_project 17 47332655 47332762 - Gm22474 snRNA snRNA MGP_CASTEiJ_T0047428.1 MGP_CASTEiJ_G0022921.1 mouse_genomes_project 17 37627771 37629906 - MGP_CASTEiJ_P0047428 protein_coding protein_coding MGP_CASTEiJ_T0006808.1 MGP_CASTEiJ_G0005616.1 mouse_genomes_project 17 88399196 88401948 - 1110020A21Rik lincRNA lincRNA MGP_CASTEiJ_T0048181.1 MGP_CASTEiJ_G0023190.1 mouse_genomes_project 17 68408702 68417774 + MGP_CASTEiJ_P0048181 Wash1 protein_coding protein_coding MGP_CASTEiJ_T0048182.1 MGP_CASTEiJ_G0023190.1 mouse_genomes_project 17 68408804 68417774 + MGP_CASTEiJ_P0048182 Wash1 protein_coding protein_coding MGP_CASTEiJ_T0046764.1 MGP_CASTEiJ_G0022774.1 mouse_genomes_project 17 33550791 33559655 + MGP_CASTEiJ_P0046764 Wdr46 protein_coding protein_coding MGP_CASTEiJ_T0046765.1 MGP_CASTEiJ_G0022774.1 mouse_genomes_project 17 33550848 33551592 + Wdr46 protein_coding retained_intron MGP_CASTEiJ_T0046766.1 MGP_CASTEiJ_G0022774.1 mouse_genomes_project 17 33551536 33553812 + Wdr46 protein_coding retained_intron MGP_CASTEiJ_T0045863.1 MGP_CASTEiJ_G0022562.1 mouse_genomes_project 17 23691113 23769128 + MGP_CASTEiJ_P0045863 Ift140 protein_coding protein_coding MGP_CASTEiJ_T0045864.1 MGP_CASTEiJ_G0022562.1 mouse_genomes_project 17 23691413 23775759 + MGP_CASTEiJ_P0045864 Ift140 protein_coding protein_coding MGP_CASTEiJ_T0045865.1 MGP_CASTEiJ_G0022562.1 mouse_genomes_project 17 23691421 23693932 + Ift140 protein_coding processed_transcript MGP_CASTEiJ_T0045866.1 MGP_CASTEiJ_G0022562.1 mouse_genomes_project 17 23703155 23773011 + Ift140 protein_coding retained_intron MGP_CASTEiJ_T0045867.1 MGP_CASTEiJ_G0022562.1 mouse_genomes_project 17 23703391 23714461 + MGP_CASTEiJ_P0045867 Ift140 protein_coding protein_coding MGP_CASTEiJ_T0045868.1 MGP_CASTEiJ_G0022562.1 mouse_genomes_project 17 23722021 23764315 + Ift140 protein_coding processed_transcript MGP_CASTEiJ_T0045869.1 MGP_CASTEiJ_G0022562.1 mouse_genomes_project 17 23722070 23775767 + Ift140 protein_coding processed_transcript MGP_CASTEiJ_T0045872.1 MGP_CASTEiJ_G0022562.1 mouse_genomes_project 17 23767003 23769471 + Ift140 protein_coding retained_intron MGP_CASTEiJ_T0045835.1 MGP_CASTEiJ_G0022559.1 mouse_genomes_project 17 23566995 23568028 + MGP_CASTEiJ_P0045835 Nme3 protein_coding protein_coding MGP_CASTEiJ_T0045836.1 MGP_CASTEiJ_G0022559.1 mouse_genomes_project 17 23567000 23567841 + Nme3 protein_coding processed_transcript MGP_CASTEiJ_T0045837.1 MGP_CASTEiJ_G0022559.1 mouse_genomes_project 17 23567016 23567750 + Nme3 protein_coding retained_intron MGP_CASTEiJ_T0045838.1 MGP_CASTEiJ_G0022559.1 mouse_genomes_project 17 23567018 23567990 + Nme3 protein_coding retained_intron MGP_CASTEiJ_T0045839.1 MGP_CASTEiJ_G0022559.1 mouse_genomes_project 17 23567256 23567853 + Nme3 protein_coding retained_intron MGP_CASTEiJ_T0098536.1 MGP_CASTEiJ_G0035467.1 mouse_genomes_project 17 3358504 3358626 + n-R5s26 rRNA rRNA MGP_CASTEiJ_T0012852.1 MGP_CASTEiJ_G0011015.1 mouse_genomes_project 17 35613842 35614037 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006719.1 MGP_CASTEiJ_G0005548.1 mouse_genomes_project 17 10869350 10886264 + lincRNA lincRNA MGP_CASTEiJ_T0047489.1 MGP_CASTEiJ_G0022970.1 mouse_genomes_project 17 41631984 41642613 - MGP_CASTEiJ_P0047489 Glyatl3 protein_coding protein_coding MGP_CASTEiJ_T0046678.1 MGP_CASTEiJ_G0022760.1 mouse_genomes_project 17 33240842 33249721 + MGP_CASTEiJ_P0046678 Pram1 protein_coding protein_coding MGP_CASTEiJ_T0046679.1 MGP_CASTEiJ_G0022760.1 mouse_genomes_project 17 33240881 33249715 + MGP_CASTEiJ_P0046679 Pram1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046680.1 MGP_CASTEiJ_G0022760.1 mouse_genomes_project 17 33248831 33249653 + Pram1 protein_coding retained_intron MGP_CASTEiJ_T0046234.1 MGP_CASTEiJ_G0022651.1 mouse_genomes_project 17 26686941 26701627 - MGP_CASTEiJ_P0046234 Spdef protein_coding protein_coding MGP_CASTEiJ_T0046235.1 MGP_CASTEiJ_G0022651.1 mouse_genomes_project 17 26687036 26701628 - MGP_CASTEiJ_P0046235 Spdef protein_coding protein_coding MGP_CASTEiJ_T0046236.1 MGP_CASTEiJ_G0022651.1 mouse_genomes_project 17 26687038 26701566 - MGP_CASTEiJ_P0046236 Spdef protein_coding protein_coding MGP_CASTEiJ_T0046237.1 MGP_CASTEiJ_G0022651.1 mouse_genomes_project 17 26687094 26690154 - Spdef protein_coding processed_transcript MGP_CASTEiJ_T0046238.1 MGP_CASTEiJ_G0022651.1 mouse_genomes_project 17 26692567 26701601 - MGP_CASTEiJ_P0046238 Spdef protein_coding protein_coding MGP_CASTEiJ_T0100755.1 MGP_CASTEiJ_G0037668.1 mouse_genomes_project 17 22604335 22604464 - Gm25092 snoRNA snoRNA MGP_CASTEiJ_T0000961.1 MGP_CASTEiJ_G0000897.1 mouse_genomes_project 17 92306411 92306592 + TEC TEC MGP_CASTEiJ_T0046608.1 MGP_CASTEiJ_G0022736.1 mouse_genomes_project 17 32270068 32290461 + MGP_CASTEiJ_P0046608 Cyp4f15 protein_coding protein_coding MGP_CASTEiJ_T0046609.1 MGP_CASTEiJ_G0022736.1 mouse_genomes_project 17 32270109 32276981 + Cyp4f15 protein_coding retained_intron MGP_CASTEiJ_T0046610.1 MGP_CASTEiJ_G0022736.1 mouse_genomes_project 17 32270112 32284992 + Cyp4f15 protein_coding processed_transcript MGP_CASTEiJ_T0046611.1 MGP_CASTEiJ_G0022736.1 mouse_genomes_project 17 32270120 32290461 + MGP_CASTEiJ_P0046611 Cyp4f15 protein_coding protein_coding MGP_CASTEiJ_T0012906.1 MGP_CASTEiJ_G0011069.1 mouse_genomes_project 17 85023676 85024055 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0047921.1 MGP_CASTEiJ_G0023089.1 mouse_genomes_project 17 52022224 52210387 + MGP_CASTEiJ_P0047921 Plcl2 protein_coding protein_coding MGP_CASTEiJ_T0046718.1 MGP_CASTEiJ_G0022767.1 mouse_genomes_project 17 33444969 33459941 + MGP_CASTEiJ_P0046718 Ndufa7 protein_coding protein_coding MGP_CASTEiJ_T0046719.1 MGP_CASTEiJ_G0022767.1 mouse_genomes_project 17 33444972 33446502 + Ndufa7 protein_coding retained_intron MGP_CASTEiJ_T0046720.1 MGP_CASTEiJ_G0022767.1 mouse_genomes_project 17 33444982 33459934 + MGP_CASTEiJ_P0046720 Ndufa7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046721.1 MGP_CASTEiJ_G0022767.1 mouse_genomes_project 17 33445023 33446225 + Ndufa7 protein_coding retained_intron MGP_CASTEiJ_T0046722.1 MGP_CASTEiJ_G0022767.1 mouse_genomes_project 17 33445423 33459807 + Ndufa7 protein_coding processed_transcript MGP_CASTEiJ_T0046723.1 MGP_CASTEiJ_G0022767.1 mouse_genomes_project 17 33445999 33459811 + Ndufa7 protein_coding processed_transcript MGP_CASTEiJ_T0046724.1 MGP_CASTEiJ_G0022767.1 mouse_genomes_project 17 33449480 33459934 + Ndufa7 protein_coding processed_transcript MGP_CASTEiJ_T0046725.1 MGP_CASTEiJ_G0022767.1 mouse_genomes_project 17 33449715 33459919 + Ndufa7 protein_coding processed_transcript MGP_CASTEiJ_T0046726.1 MGP_CASTEiJ_G0022767.1 mouse_genomes_project 17 33449749 33459939 + Ndufa7 protein_coding retained_intron MGP_CASTEiJ_T0048421.1 MGP_CASTEiJ_G0023264.1 mouse_genomes_project 17 83462671 83471127 + MGP_CASTEiJ_P0048421 Morn2 protein_coding protein_coding MGP_CASTEiJ_T0048074.1 MGP_CASTEiJ_G0023149.1 mouse_genomes_project 17 58801972 58836703 - MGP_CASTEiJ_P0048074 Acer1 protein_coding protein_coding MGP_CASTEiJ_T0047436.1 MGP_CASTEiJ_G0022927.1 mouse_genomes_project 17 37863733 37867588 - MGP_CASTEiJ_P0047436 Olfr112 protein_coding protein_coding MGP_CASTEiJ_T0047439.1 MGP_CASTEiJ_G0022927.1 mouse_genomes_project 17 37863904 37867200 - MGP_CASTEiJ_P0047439 Olfr112 protein_coding protein_coding MGP_CASTEiJ_T0046095.1 MGP_CASTEiJ_G0022617.1 mouse_genomes_project 17 24913739 24918183 + MGP_CASTEiJ_P0046095 Mrpl28 protein_coding protein_coding MGP_CASTEiJ_T0046096.1 MGP_CASTEiJ_G0022617.1 mouse_genomes_project 17 24913942 24915149 + Mrpl28 protein_coding retained_intron MGP_CASTEiJ_T0046097.1 MGP_CASTEiJ_G0022617.1 mouse_genomes_project 17 24916789 24918052 + MGP_CASTEiJ_P0046097 Mrpl28 protein_coding protein_coding MGP_CASTEiJ_T0009905.1 MGP_CASTEiJ_G0008093.1 mouse_genomes_project 17 22830284 22830362 - Mir5134 miRNA miRNA MGP_CASTEiJ_T0045279.1 MGP_CASTEiJ_G0022368.1 mouse_genomes_project 17 5146249 5149056 + MGP_CASTEiJ_P0045279 protein_coding protein_coding MGP_CASTEiJ_T0012854.1 MGP_CASTEiJ_G0011017.1 mouse_genomes_project 17 36328158 36328344 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046309.1 MGP_CASTEiJ_G0022665.1 mouse_genomes_project 17 27392972 27396454 - Tulp1 protein_coding retained_intron MGP_CASTEiJ_T0046310.1 MGP_CASTEiJ_G0022665.1 mouse_genomes_project 17 27392972 27407648 - MGP_CASTEiJ_P0046310 Tulp1 protein_coding protein_coding MGP_CASTEiJ_T0046311.1 MGP_CASTEiJ_G0022665.1 mouse_genomes_project 17 27392973 27401251 - MGP_CASTEiJ_P0046311 Tulp1 protein_coding protein_coding MGP_CASTEiJ_T0046312.1 MGP_CASTEiJ_G0022665.1 mouse_genomes_project 17 27393311 27401219 - MGP_CASTEiJ_P0046312 Tulp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046313.1 MGP_CASTEiJ_G0022665.1 mouse_genomes_project 17 27393946 27405422 - Tulp1 protein_coding retained_intron MGP_CASTEiJ_T0046314.1 MGP_CASTEiJ_G0022665.1 mouse_genomes_project 17 27393954 27397777 - Tulp1 protein_coding retained_intron MGP_CASTEiJ_T0046315.1 MGP_CASTEiJ_G0022665.1 mouse_genomes_project 17 27394504 27401678 - MGP_CASTEiJ_P0046315 Tulp1 protein_coding protein_coding MGP_CASTEiJ_T0046316.1 MGP_CASTEiJ_G0022665.1 mouse_genomes_project 17 27397217 27407682 - MGP_CASTEiJ_P0046316 Tulp1 protein_coding protein_coding MGP_CASTEiJ_T0046317.1 MGP_CASTEiJ_G0022665.1 mouse_genomes_project 17 27401006 27404934 - Tulp1 protein_coding retained_intron MGP_CASTEiJ_T0046318.1 MGP_CASTEiJ_G0022665.1 mouse_genomes_project 17 27404161 27405459 - Tulp1 protein_coding retained_intron MGP_CASTEiJ_T0046319.1 MGP_CASTEiJ_G0022665.1 mouse_genomes_project 17 27405196 27407646 - Tulp1 protein_coding retained_intron MGP_CASTEiJ_T0046320.1 MGP_CASTEiJ_G0022665.1 mouse_genomes_project 17 27406185 27407639 - Tulp1 protein_coding retained_intron MGP_CASTEiJ_T0047345.1 MGP_CASTEiJ_G0022890.1 mouse_genomes_project 17 36623734 36627750 - MGP_CASTEiJ_P0047345 H2-M10.4 protein_coding protein_coding MGP_CASTEiJ_T0011103.1 MGP_CASTEiJ_G0009291.1 mouse_genomes_project 17 72067433 72067673 - Gm22967 misc_RNA misc_RNA MGP_CASTEiJ_T0045967.1 MGP_CASTEiJ_G0022586.1 mouse_genomes_project 17 24454252 24456484 + MGP_CASTEiJ_P0045967 Gng13 protein_coding protein_coding MGP_CASTEiJ_T0045968.1 MGP_CASTEiJ_G0022586.1 mouse_genomes_project 17 24454609 24456165 + MGP_CASTEiJ_P0045968 Gng13 protein_coding protein_coding MGP_CASTEiJ_T0045522.1 MGP_CASTEiJ_G0022457.1 mouse_genomes_project 17 18870757 18871693 - MGP_CASTEiJ_P0045522 Vmn1r231 protein_coding protein_coding MGP_CASTEiJ_T0047970.1 MGP_CASTEiJ_G0023112.1 mouse_genomes_project 17 57753580 57763713 + MGP_CASTEiJ_P0047970 Fsd1 protein_coding protein_coding MGP_CASTEiJ_T0048115.1 MGP_CASTEiJ_G0023169.1 mouse_genomes_project 17 59407480 59447757 - MGP_CASTEiJ_P0048115 Vmn2r120 protein_coding protein_coding MGP_CASTEiJ_T0046093.1 MGP_CASTEiJ_G0022616.1 mouse_genomes_project 17 24901645 24913475 + MGP_CASTEiJ_P0046093 Tmem8 protein_coding protein_coding MGP_CASTEiJ_T0046094.1 MGP_CASTEiJ_G0022616.1 mouse_genomes_project 17 24909662 24913475 + MGP_CASTEiJ_P0046094 Tmem8 protein_coding protein_coding MGP_CASTEiJ_T0047477.1 MGP_CASTEiJ_G0022962.1 mouse_genomes_project 17 41252723 41265744 + MGP_CASTEiJ_P0047477 Esp8 protein_coding protein_coding MGP_CASTEiJ_T0047138.1 MGP_CASTEiJ_G0022849.1 mouse_genomes_project 17 35039141 35042518 - MGP_CASTEiJ_P0047138 Lst1 protein_coding protein_coding MGP_CASTEiJ_T0099540.1 MGP_CASTEiJ_G0036453.1 mouse_genomes_project 17 57423052 57423157 + Gm22654 snRNA snRNA MGP_CASTEiJ_T0048434.1 MGP_CASTEiJ_G0023272.1 mouse_genomes_project 17 84597851 84906511 - MGP_CASTEiJ_P0048434 Slc8a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048435.1 MGP_CASTEiJ_G0023272.1 mouse_genomes_project 17 84626472 84906571 - MGP_CASTEiJ_P0048435 Slc8a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048436.1 MGP_CASTEiJ_G0023272.1 mouse_genomes_project 17 84626472 84881399 - MGP_CASTEiJ_P0048436 Slc8a1 protein_coding protein_coding MGP_CASTEiJ_T0048437.1 MGP_CASTEiJ_G0023272.1 mouse_genomes_project 17 84626472 84881399 - MGP_CASTEiJ_P0048437 Slc8a1 protein_coding protein_coding MGP_CASTEiJ_T0045728.1 MGP_CASTEiJ_G0022530.1 mouse_genomes_project 17 23092183 23093769 + MGP_CASTEiJ_P0045728 Bricd5 protein_coding protein_coding MGP_CASTEiJ_T0045729.1 MGP_CASTEiJ_G0022530.1 mouse_genomes_project 17 23092266 23093687 + MGP_CASTEiJ_P0045729 Bricd5 protein_coding protein_coding MGP_CASTEiJ_T0045297.1 MGP_CASTEiJ_G0022377.1 mouse_genomes_project 17 5715134 5729200 + MGP_CASTEiJ_P0045297 protein_coding protein_coding MGP_CASTEiJ_T0045298.1 MGP_CASTEiJ_G0022377.1 mouse_genomes_project 17 5716014 5725879 + protein_coding retained_intron MGP_CASTEiJ_T0045299.1 MGP_CASTEiJ_G0022377.1 mouse_genomes_project 17 5716070 5729570 + MGP_CASTEiJ_P0045299 protein_coding protein_coding MGP_CASTEiJ_T0045300.1 MGP_CASTEiJ_G0022377.1 mouse_genomes_project 17 5728343 5729463 + protein_coding retained_intron MGP_CASTEiJ_T0003664.1 MGP_CASTEiJ_G0003302.1 mouse_genomes_project 17 74316385 74317497 - Gm15641 antisense antisense MGP_CASTEiJ_T0047972.1 MGP_CASTEiJ_G0023114.1 mouse_genomes_project 17 57772296 57780238 + MGP_CASTEiJ_P0047972 Mpnd protein_coding protein_coding MGP_CASTEiJ_T0047973.1 MGP_CASTEiJ_G0023114.1 mouse_genomes_project 17 57777564 57786186 + MGP_CASTEiJ_P0047973 Mpnd protein_coding protein_coding MGP_CASTEiJ_T0047974.1 MGP_CASTEiJ_G0023114.1 mouse_genomes_project 17 57777571 57786042 + MGP_CASTEiJ_P0047974 Mpnd protein_coding protein_coding MGP_CASTEiJ_T0047975.1 MGP_CASTEiJ_G0023114.1 mouse_genomes_project 17 57777594 57786049 + MGP_CASTEiJ_P0047975 Mpnd protein_coding protein_coding MGP_CASTEiJ_T0047976.1 MGP_CASTEiJ_G0023114.1 mouse_genomes_project 17 57777618 57780636 + Mpnd protein_coding retained_intron MGP_CASTEiJ_T0047977.1 MGP_CASTEiJ_G0023114.1 mouse_genomes_project 17 57777696 57786010 + MGP_CASTEiJ_P0047977 Mpnd protein_coding protein_coding MGP_CASTEiJ_T0047978.1 MGP_CASTEiJ_G0023114.1 mouse_genomes_project 17 57778296 57780020 + Mpnd protein_coding retained_intron MGP_CASTEiJ_T0047979.1 MGP_CASTEiJ_G0023114.1 mouse_genomes_project 17 57778803 57784860 + MGP_CASTEiJ_P0047979 Mpnd protein_coding protein_coding MGP_CASTEiJ_T0047980.1 MGP_CASTEiJ_G0023114.1 mouse_genomes_project 17 57780256 57784479 + Mpnd protein_coding retained_intron MGP_CASTEiJ_T0047032.1 MGP_CASTEiJ_G0022829.1 mouse_genomes_project 17 34843369 34858662 + MGP_CASTEiJ_P0047032 Vars protein_coding protein_coding MGP_CASTEiJ_T0047033.1 MGP_CASTEiJ_G0022829.1 mouse_genomes_project 17 34843433 34858370 + MGP_CASTEiJ_P0047033 Vars protein_coding protein_coding MGP_CASTEiJ_T0047034.1 MGP_CASTEiJ_G0022829.1 mouse_genomes_project 17 34843699 34847189 + MGP_CASTEiJ_P0047034 Vars protein_coding protein_coding MGP_CASTEiJ_T0047035.1 MGP_CASTEiJ_G0022829.1 mouse_genomes_project 17 34845043 34847239 + MGP_CASTEiJ_P0047035 Vars protein_coding protein_coding MGP_CASTEiJ_T0047036.1 MGP_CASTEiJ_G0022829.1 mouse_genomes_project 17 34845100 34858662 + Vars protein_coding retained_intron MGP_CASTEiJ_T0047037.1 MGP_CASTEiJ_G0022829.1 mouse_genomes_project 17 34846680 34847448 + Vars protein_coding retained_intron MGP_CASTEiJ_T0047038.1 MGP_CASTEiJ_G0022829.1 mouse_genomes_project 17 34847098 34847716 + Vars protein_coding retained_intron MGP_CASTEiJ_T0047039.1 MGP_CASTEiJ_G0022829.1 mouse_genomes_project 17 34853554 34854739 + Vars protein_coding retained_intron MGP_CASTEiJ_T0047040.1 MGP_CASTEiJ_G0022829.1 mouse_genomes_project 17 34854503 34855422 + Vars protein_coding retained_intron MGP_CASTEiJ_T0047041.1 MGP_CASTEiJ_G0022829.1 mouse_genomes_project 17 34855622 34856809 + Vars protein_coding retained_intron MGP_CASTEiJ_T0047042.1 MGP_CASTEiJ_G0022829.1 mouse_genomes_project 17 34856166 34857387 + MGP_CASTEiJ_P0047042 Vars protein_coding protein_coding MGP_CASTEiJ_T0047043.1 MGP_CASTEiJ_G0022829.1 mouse_genomes_project 17 34856175 34857177 + Vars protein_coding retained_intron MGP_CASTEiJ_T0047044.1 MGP_CASTEiJ_G0022829.1 mouse_genomes_project 17 34857304 34858351 + Vars protein_coding retained_intron MGP_CASTEiJ_T0045620.1 MGP_CASTEiJ_G0022499.1 mouse_genomes_project 17 22269114 22273259 - MGP_CASTEiJ_P0045620 Paqr4 protein_coding protein_coding MGP_CASTEiJ_T0045368.1 MGP_CASTEiJ_G0022398.1 mouse_genomes_project 17 10575598 10581893 - MGP_CASTEiJ_P0045368 Mrpl18 protein_coding protein_coding MGP_CASTEiJ_T0045369.1 MGP_CASTEiJ_G0022398.1 mouse_genomes_project 17 10578091 10581173 - Mrpl18 protein_coding processed_transcript MGP_CASTEiJ_T0045370.1 MGP_CASTEiJ_G0022398.1 mouse_genomes_project 17 10578196 10581652 - Mrpl18 protein_coding retained_intron MGP_CASTEiJ_T0045371.1 MGP_CASTEiJ_G0022398.1 mouse_genomes_project 17 10578240 10581751 - Mrpl18 protein_coding processed_transcript MGP_CASTEiJ_T0045372.1 MGP_CASTEiJ_G0022398.1 mouse_genomes_project 17 10581050 10581618 - Mrpl18 protein_coding retained_intron MGP_CASTEiJ_T0046340.1 MGP_CASTEiJ_G0022672.1 mouse_genomes_project 17 27704424 27768718 - MGP_CASTEiJ_P0046340 Slc26a8 protein_coding protein_coding MGP_CASTEiJ_T0046341.1 MGP_CASTEiJ_G0022672.1 mouse_genomes_project 17 27716147 27768718 - Slc26a8 protein_coding retained_intron MGP_CASTEiJ_T0006714.1 MGP_CASTEiJ_G0005544.1 mouse_genomes_project 17 4152046 4184761 - Gm2885 lincRNA lincRNA MGP_CASTEiJ_T0048449.1 MGP_CASTEiJ_G0023278.1 mouse_genomes_project 17 86872115 86921687 - MGP_CASTEiJ_P0048449 Kcng3 protein_coding protein_coding MGP_CASTEiJ_T0045423.1 MGP_CASTEiJ_G0022412.1 mouse_genomes_project 17 12621733 12637972 - MGP_CASTEiJ_P0045423 Phf10 protein_coding protein_coding MGP_CASTEiJ_T0045424.1 MGP_CASTEiJ_G0022412.1 mouse_genomes_project 17 12621738 12623553 - Phf10 protein_coding retained_intron MGP_CASTEiJ_T0045425.1 MGP_CASTEiJ_G0022412.1 mouse_genomes_project 17 12623290 12629424 - Phf10 protein_coding retained_intron MGP_CASTEiJ_T0045426.1 MGP_CASTEiJ_G0022412.1 mouse_genomes_project 17 12624462 12637972 - MGP_CASTEiJ_P0045426 Phf10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045427.1 MGP_CASTEiJ_G0022412.1 mouse_genomes_project 17 12632409 12636226 - Phf10 protein_coding retained_intron MGP_CASTEiJ_T0047444.1 MGP_CASTEiJ_G0022934.1 mouse_genomes_project 17 38026832 38027565 + MGP_CASTEiJ_P0047444 Olfr120 protein_coding protein_coding MGP_CASTEiJ_T0046363.1 MGP_CASTEiJ_G0022677.1 mouse_genomes_project 17 27994720 28018924 - MGP_CASTEiJ_P0046363 4930539E08Rik protein_coding unknown_likely_coding MGP_CASTEiJ_T0046364.1 MGP_CASTEiJ_G0022677.1 mouse_genomes_project 17 27995852 28019015 - MGP_CASTEiJ_P0046364 4930539E08Rik protein_coding protein_coding MGP_CASTEiJ_T0045800.1 MGP_CASTEiJ_G0022547.1 mouse_genomes_project 17 23389652 23398093 + MGP_CASTEiJ_P0045800 Rpl3l protein_coding unknown_likely_coding MGP_CASTEiJ_T0045801.1 MGP_CASTEiJ_G0022547.1 mouse_genomes_project 17 23389823 23398088 + MGP_CASTEiJ_P0045801 Rpl3l protein_coding protein_coding MGP_CASTEiJ_T0045802.1 MGP_CASTEiJ_G0022547.1 mouse_genomes_project 17 23390177 23395310 + MGP_CASTEiJ_P0045802 Rpl3l protein_coding protein_coding MGP_CASTEiJ_T0045803.1 MGP_CASTEiJ_G0022547.1 mouse_genomes_project 17 23394629 23398088 + MGP_CASTEiJ_P0045803 Rpl3l protein_coding protein_coding MGP_CASTEiJ_T0047418.1 MGP_CASTEiJ_G0022911.1 mouse_genomes_project 17 37430647 37433166 - MGP_CASTEiJ_P0047418 protein_coding protein_coding MGP_CASTEiJ_T0102137.1 MGP_CASTEiJ_G0038862.1 mouse_genomes_project 17 25108297 25108996 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0012904.1 MGP_CASTEiJ_G0011067.1 mouse_genomes_project 17 81711054 81717333 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045458.1 MGP_CASTEiJ_G0022421.1 mouse_genomes_project 17 13202296 13232912 - MGP_CASTEiJ_P0045458 Prdm9 protein_coding protein_coding MGP_CASTEiJ_T0045459.1 MGP_CASTEiJ_G0022421.1 mouse_genomes_project 17 13204189 13218391 - Prdm9 protein_coding retained_intron MGP_CASTEiJ_T0045460.1 MGP_CASTEiJ_G0022421.1 mouse_genomes_project 17 13204302 13217923 - Prdm9 protein_coding retained_intron MGP_CASTEiJ_T0045461.1 MGP_CASTEiJ_G0022421.1 mouse_genomes_project 17 13215743 13233950 - MGP_CASTEiJ_P0045461 Prdm9 protein_coding protein_coding MGP_CASTEiJ_T0045462.1 MGP_CASTEiJ_G0022421.1 mouse_genomes_project 17 13225658 13233964 - Prdm9 protein_coding retained_intron MGP_CASTEiJ_T0045463.1 MGP_CASTEiJ_G0022421.1 mouse_genomes_project 17 13232427 13233932 - Prdm9 protein_coding processed_transcript MGP_CASTEiJ_T0000958.1 MGP_CASTEiJ_G0000894.1 mouse_genomes_project 17 73958405 73959795 - TEC TEC MGP_CASTEiJ_T0046215.1 MGP_CASTEiJ_G0022646.1 mouse_genomes_project 17 26502320 26508167 + MGP_CASTEiJ_P0046215 protein_coding protein_coding MGP_CASTEiJ_T0046216.1 MGP_CASTEiJ_G0022646.1 mouse_genomes_project 17 26507401 26507521 + MGP_CASTEiJ_P0046216 protein_coding protein_coding MGP_CASTEiJ_T0102155.1 MGP_CASTEiJ_G0038880.1 mouse_genomes_project 17 36299860 36307706 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0048095.1 MGP_CASTEiJ_G0023158.1 mouse_genomes_project 17 58933902 58951516 - MGP_CASTEiJ_P0048095 Dennd1c protein_coding protein_coding MGP_CASTEiJ_T0012871.1 MGP_CASTEiJ_G0011034.1 mouse_genomes_project 17 38315407 38316057 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0101859.1 MGP_CASTEiJ_G0038602.1 mouse_genomes_project 17 41579302 41593428 + unitary_pseudogene unitary_pseudogene MGP_CASTEiJ_T0098539.1 MGP_CASTEiJ_G0035470.1 mouse_genomes_project 17 45604674 45604793 - n-R5s27 rRNA rRNA MGP_CASTEiJ_T0046075.1 MGP_CASTEiJ_G0022609.1 mouse_genomes_project 17 24704777 24707258 - MGP_CASTEiJ_P0046075 Nhlrc4 protein_coding protein_coding MGP_CASTEiJ_T0003645.1 MGP_CASTEiJ_G0003287.1 mouse_genomes_project 17 45679561 45683277 + Runx2os2 antisense antisense MGP_CASTEiJ_T0045725.1 MGP_CASTEiJ_G0022528.1 mouse_genomes_project 17 23088767 23089886 + MGP_CASTEiJ_P0045725 Pgp protein_coding protein_coding MGP_CASTEiJ_T0102183.1 MGP_CASTEiJ_G0038908.1 mouse_genomes_project 17 37717143 37719389 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0046606.1 MGP_CASTEiJ_G0022734.1 mouse_genomes_project 17 32194100 32214544 + MGP_CASTEiJ_P0046606 Cyp4f37 protein_coding protein_coding MGP_CASTEiJ_T0046157.1 MGP_CASTEiJ_G0022630.1 mouse_genomes_project 17 25572045 25637947 + MGP_CASTEiJ_P0046157 Crebrf protein_coding protein_coding MGP_CASTEiJ_T0046158.1 MGP_CASTEiJ_G0022630.1 mouse_genomes_project 17 25572050 25599310 + MGP_CASTEiJ_P0046158 Crebrf protein_coding protein_coding MGP_CASTEiJ_T0046159.1 MGP_CASTEiJ_G0022630.1 mouse_genomes_project 17 25572105 25626087 + MGP_CASTEiJ_P0046159 Crebrf protein_coding protein_coding MGP_CASTEiJ_T0046160.1 MGP_CASTEiJ_G0022630.1 mouse_genomes_project 17 25572119 25624094 + MGP_CASTEiJ_P0046160 Crebrf protein_coding protein_coding MGP_CASTEiJ_T0046161.1 MGP_CASTEiJ_G0022630.1 mouse_genomes_project 17 25599334 25619994 + Crebrf protein_coding retained_intron MGP_CASTEiJ_T0046162.1 MGP_CASTEiJ_G0022630.1 mouse_genomes_project 17 25619508 25621726 + Crebrf protein_coding retained_intron MGP_CASTEiJ_T0047523.1 MGP_CASTEiJ_G0022986.1 mouse_genomes_project 17 44541191 44637513 + MGP_CASTEiJ_P0047523 Cyp39a1 protein_coding protein_coding MGP_CASTEiJ_T0009914.1 MGP_CASTEiJ_G0008102.1 mouse_genomes_project 17 25801804 25801872 + Mir6968 miRNA miRNA MGP_CASTEiJ_T0012834.1 MGP_CASTEiJ_G0010997.1 mouse_genomes_project 17 10476864 10477888 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045383.1 MGP_CASTEiJ_G0022400.1 mouse_genomes_project 17 10590262 10593722 - protein_coding retained_intron MGP_CASTEiJ_T0045384.1 MGP_CASTEiJ_G0022400.1 mouse_genomes_project 17 10591217 10595601 - MGP_CASTEiJ_P0045384 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048569.1 MGP_CASTEiJ_G0023319.1 mouse_genomes_project 17 92781943 92999897 - MGP_CASTEiJ_P0048569 Fshr protein_coding protein_coding MGP_CASTEiJ_T0047389.1 MGP_CASTEiJ_G0022905.1 mouse_genomes_project 17 37263503 37274103 + MGP_CASTEiJ_P0047389 Zfp57 protein_coding protein_coding MGP_CASTEiJ_T0047390.1 MGP_CASTEiJ_G0022905.1 mouse_genomes_project 17 37265965 37272913 + MGP_CASTEiJ_P0047390 Zfp57 protein_coding protein_coding MGP_CASTEiJ_T0047391.1 MGP_CASTEiJ_G0022905.1 mouse_genomes_project 17 37266008 37274103 + MGP_CASTEiJ_P0047391 Zfp57 protein_coding protein_coding MGP_CASTEiJ_T0047392.1 MGP_CASTEiJ_G0022905.1 mouse_genomes_project 17 37266037 37269554 + MGP_CASTEiJ_P0047392 Zfp57 protein_coding protein_coding MGP_CASTEiJ_T0047393.1 MGP_CASTEiJ_G0022905.1 mouse_genomes_project 17 37266052 37267294 + Zfp57 protein_coding retained_intron MGP_CASTEiJ_T0047394.1 MGP_CASTEiJ_G0022905.1 mouse_genomes_project 17 37266060 37267172 + Zfp57 protein_coding retained_intron MGP_CASTEiJ_T0047395.1 MGP_CASTEiJ_G0022905.1 mouse_genomes_project 17 37266079 37273294 + MGP_CASTEiJ_P0047395 Zfp57 protein_coding protein_coding MGP_CASTEiJ_T0047396.1 MGP_CASTEiJ_G0022905.1 mouse_genomes_project 17 37266095 37269539 + MGP_CASTEiJ_P0047396 Zfp57 protein_coding protein_coding MGP_CASTEiJ_T0047397.1 MGP_CASTEiJ_G0022905.1 mouse_genomes_project 17 37266153 37273217 + MGP_CASTEiJ_P0047397 Zfp57 protein_coding protein_coding MGP_CASTEiJ_T0047398.1 MGP_CASTEiJ_G0022905.1 mouse_genomes_project 17 37266521 37274106 + MGP_CASTEiJ_P0047398 Zfp57 protein_coding protein_coding MGP_CASTEiJ_T0047399.1 MGP_CASTEiJ_G0022905.1 mouse_genomes_project 17 37267149 37274103 + MGP_CASTEiJ_P0047399 Zfp57 protein_coding protein_coding MGP_CASTEiJ_T0047400.1 MGP_CASTEiJ_G0022905.1 mouse_genomes_project 17 37268001 37273186 + MGP_CASTEiJ_P0047400 Zfp57 protein_coding protein_coding MGP_CASTEiJ_T0047401.1 MGP_CASTEiJ_G0022905.1 mouse_genomes_project 17 37268082 37269721 + Zfp57 protein_coding retained_intron MGP_CASTEiJ_T0102125.1 MGP_CASTEiJ_G0038850.1 mouse_genomes_project 17 18982087 18982510 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100773.1 MGP_CASTEiJ_G0037686.1 mouse_genomes_project 17 74222162 74222247 + Snord92 snoRNA snoRNA MGP_CASTEiJ_T0047454.1 MGP_CASTEiJ_G0022944.1 mouse_genomes_project 17 38403229 38404222 - MGP_CASTEiJ_P0047454 Olfr129 protein_coding protein_coding MGP_CASTEiJ_T0047455.1 MGP_CASTEiJ_G0022944.1 mouse_genomes_project 17 38403229 38408415 - MGP_CASTEiJ_P0047455 Olfr129 protein_coding protein_coding MGP_CASTEiJ_T0045231.1 MGP_CASTEiJ_G0022356.1 mouse_genomes_project 17 2590944 2592389 - MGP_CASTEiJ_P0045231 Ldhal6b protein_coding protein_coding MGP_CASTEiJ_T0048549.1 MGP_CASTEiJ_G0023314.1 mouse_genomes_project 17 92207763 92226672 + MGP_CASTEiJ_P0048549 protein_coding protein_coding MGP_CASTEiJ_T0048550.1 MGP_CASTEiJ_G0023314.1 mouse_genomes_project 17 92207786 92244507 + protein_coding retained_intron MGP_CASTEiJ_T0048551.1 MGP_CASTEiJ_G0023314.1 mouse_genomes_project 17 92207803 92255007 + MGP_CASTEiJ_P0048551 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048552.1 MGP_CASTEiJ_G0023314.1 mouse_genomes_project 17 92226361 92258816 + MGP_CASTEiJ_P0048552 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012839.1 MGP_CASTEiJ_G0011002.1 mouse_genomes_project 17 13521778 13522244 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011111.1 MGP_CASTEiJ_G0009299.1 mouse_genomes_project 17 89113305 89113504 + Gm27502 misc_RNA misc_RNA MGP_CASTEiJ_T0016818.1 MGP_CASTEiJ_G0014662.1 mouse_genomes_project 17 34395479 34409276 - Gm20460 processed_transcript processed_transcript MGP_CASTEiJ_T0009932.1 MGP_CASTEiJ_G0008120.1 mouse_genomes_project 17 35051174 35051252 + Mir6973a miRNA miRNA MGP_CASTEiJ_T0045428.1 MGP_CASTEiJ_G0022413.1 mouse_genomes_project 17 12642461 12657307 - MGP_CASTEiJ_P0045428 protein_coding protein_coding MGP_CASTEiJ_T0045429.1 MGP_CASTEiJ_G0022413.1 mouse_genomes_project 17 12642465 12657285 - MGP_CASTEiJ_P0045429 protein_coding protein_coding MGP_CASTEiJ_T0048366.1 MGP_CASTEiJ_G0023239.1 mouse_genomes_project 17 81201470 81381387 + MGP_CASTEiJ_P0048366 Crim1 protein_coding protein_coding MGP_CASTEiJ_T0003599.1 MGP_CASTEiJ_G0003253.1 mouse_genomes_project 17 11374051 11374667 - Gm16052 antisense antisense MGP_CASTEiJ_T0045532.1 MGP_CASTEiJ_G0022461.1 mouse_genomes_project 17 19019877 19038325 + MGP_CASTEiJ_P0045532 Zfp160 protein_coding unknown_likely_coding MGP_CASTEiJ_T0102126.1 MGP_CASTEiJ_G0038851.1 mouse_genomes_project 17 19172087 19172612 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045533.1 MGP_CASTEiJ_G0022462.1 mouse_genomes_project 17 19353094 19354084 + MGP_CASTEiJ_P0045533 Vmn1r234 protein_coding protein_coding MGP_CASTEiJ_T0048389.1 MGP_CASTEiJ_G0023251.1 mouse_genomes_project 17 82000300 82071896 - MGP_CASTEiJ_P0048389 Prkd3 protein_coding protein_coding MGP_CASTEiJ_T0048390.1 MGP_CASTEiJ_G0023251.1 mouse_genomes_project 17 82000300 82079482 - MGP_CASTEiJ_P0048390 Prkd3 protein_coding protein_coding MGP_CASTEiJ_T0048391.1 MGP_CASTEiJ_G0023251.1 mouse_genomes_project 17 82001444 82079482 - MGP_CASTEiJ_P0048391 Prkd3 protein_coding protein_coding MGP_CASTEiJ_T0048392.1 MGP_CASTEiJ_G0023251.1 mouse_genomes_project 17 82002525 82066188 - MGP_CASTEiJ_P0048392 Prkd3 protein_coding protein_coding MGP_CASTEiJ_T0048393.1 MGP_CASTEiJ_G0023251.1 mouse_genomes_project 17 82002535 82043441 - MGP_CASTEiJ_P0048393 Prkd3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048394.1 MGP_CASTEiJ_G0023251.1 mouse_genomes_project 17 82022747 82041934 - Prkd3 protein_coding retained_intron MGP_CASTEiJ_T0048395.1 MGP_CASTEiJ_G0023251.1 mouse_genomes_project 17 82024680 82041934 - MGP_CASTEiJ_P0048395 Prkd3 protein_coding protein_coding MGP_CASTEiJ_T0048396.1 MGP_CASTEiJ_G0023251.1 mouse_genomes_project 17 82025401 82066351 - Prkd3 protein_coding processed_transcript MGP_CASTEiJ_T0048397.1 MGP_CASTEiJ_G0023251.1 mouse_genomes_project 17 82068711 82079443 - Prkd3 protein_coding retained_intron MGP_CASTEiJ_T0047998.1 MGP_CASTEiJ_G0023123.1 mouse_genomes_project 17 57948152 57959588 + MGP_CASTEiJ_P0047998 Tnfaip8l1 protein_coding protein_coding MGP_CASTEiJ_T0048308.1 MGP_CASTEiJ_G0023221.1 mouse_genomes_project 17 75561694 75587638 + MGP_CASTEiJ_P0048308 Lbh protein_coding protein_coding MGP_CASTEiJ_T0048309.1 MGP_CASTEiJ_G0023221.1 mouse_genomes_project 17 75565476 75583657 + MGP_CASTEiJ_P0048309 Lbh protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012916.1 MGP_CASTEiJ_G0011079.1 mouse_genomes_project 17 98766586 98766761 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045806.1 MGP_CASTEiJ_G0022549.1 mouse_genomes_project 17 23417832 23426699 + MGP_CASTEiJ_P0045806 Hs3st6 protein_coding protein_coding MGP_CASTEiJ_T0048388.1 MGP_CASTEiJ_G0023250.1 mouse_genomes_project 17 81988156 81998956 + MGP_CASTEiJ_P0048388 Ndufaf7 protein_coding protein_coding MGP_CASTEiJ_T0048084.1 MGP_CASTEiJ_G0023156.1 mouse_genomes_project 17 58903249 58926259 - MGP_CASTEiJ_P0048084 Slc25a23 protein_coding protein_coding MGP_CASTEiJ_T0048085.1 MGP_CASTEiJ_G0023156.1 mouse_genomes_project 17 58904737 58916770 - MGP_CASTEiJ_P0048085 Slc25a23 protein_coding protein_coding MGP_CASTEiJ_T0048086.1 MGP_CASTEiJ_G0023156.1 mouse_genomes_project 17 58905023 58917775 - MGP_CASTEiJ_P0048086 Slc25a23 protein_coding protein_coding MGP_CASTEiJ_T0048087.1 MGP_CASTEiJ_G0023156.1 mouse_genomes_project 17 58906583 58917528 - MGP_CASTEiJ_P0048087 Slc25a23 protein_coding protein_coding MGP_CASTEiJ_T0048088.1 MGP_CASTEiJ_G0023156.1 mouse_genomes_project 17 58906727 58919332 - MGP_CASTEiJ_P0048088 Slc25a23 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048089.1 MGP_CASTEiJ_G0023156.1 mouse_genomes_project 17 58920699 58926215 - Slc25a23 protein_coding retained_intron MGP_CASTEiJ_T0048319.1 MGP_CASTEiJ_G0023225.1 mouse_genomes_project 17 76517575 76549896 + MGP_CASTEiJ_P0048319 Ehd3 protein_coding protein_coding MGP_CASTEiJ_T0012909.1 MGP_CASTEiJ_G0011072.1 mouse_genomes_project 17 91340188 91341774 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099526.1 MGP_CASTEiJ_G0036439.1 mouse_genomes_project 17 30089869 30089973 - Gm24661 snRNA snRNA MGP_CASTEiJ_T0045393.1 MGP_CASTEiJ_G0022405.1 mouse_genomes_project 17 11119578 11230177 - Tcte2 protein_coding processed_transcript MGP_CASTEiJ_T0045394.1 MGP_CASTEiJ_G0022405.1 mouse_genomes_project 17 11121628 11377025 - Tcte2 protein_coding processed_transcript MGP_CASTEiJ_T0045395.1 MGP_CASTEiJ_G0022405.1 mouse_genomes_project 17 11121628 11283498 - Tcte2 protein_coding processed_transcript MGP_CASTEiJ_T0045396.1 MGP_CASTEiJ_G0022405.1 mouse_genomes_project 17 11326830 11377025 - MGP_CASTEiJ_P0045396 Tcte2 protein_coding protein_coding MGP_CASTEiJ_T0045397.1 MGP_CASTEiJ_G0022405.1 mouse_genomes_project 17 11326836 11377049 - MGP_CASTEiJ_P0045397 Tcte2 protein_coding protein_coding MGP_CASTEiJ_T0045398.1 MGP_CASTEiJ_G0022405.1 mouse_genomes_project 17 11328418 11377014 - MGP_CASTEiJ_P0045398 Tcte2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045399.1 MGP_CASTEiJ_G0022405.1 mouse_genomes_project 17 11328436 11347263 - MGP_CASTEiJ_P0045399 Tcte2 protein_coding protein_coding MGP_CASTEiJ_T0045400.1 MGP_CASTEiJ_G0022405.1 mouse_genomes_project 17 11330836 11377248 - MGP_CASTEiJ_P0045400 Tcte2 protein_coding protein_coding MGP_CASTEiJ_T0045401.1 MGP_CASTEiJ_G0022405.1 mouse_genomes_project 17 11330836 11377471 - MGP_CASTEiJ_P0045401 Tcte2 protein_coding protein_coding MGP_CASTEiJ_T0045402.1 MGP_CASTEiJ_G0022405.1 mouse_genomes_project 17 11330836 11377033 - MGP_CASTEiJ_P0045402 Tcte2 protein_coding protein_coding MGP_CASTEiJ_T0099552.1 MGP_CASTEiJ_G0036465.1 mouse_genomes_project 17 92096851 92096946 - Gm22542 snRNA snRNA MGP_CASTEiJ_T0046518.1 MGP_CASTEiJ_G0022715.1 mouse_genomes_project 17 30954184 30966325 + MGP_CASTEiJ_P0046518 Ndufv3 protein_coding protein_coding MGP_CASTEiJ_T0046519.1 MGP_CASTEiJ_G0022715.1 mouse_genomes_project 17 30954219 30961164 + Ndufv3 protein_coding processed_transcript MGP_CASTEiJ_T0046520.1 MGP_CASTEiJ_G0022715.1 mouse_genomes_project 17 30954227 30966328 + MGP_CASTEiJ_P0046520 Ndufv3 protein_coding protein_coding MGP_CASTEiJ_T0046521.1 MGP_CASTEiJ_G0022715.1 mouse_genomes_project 17 30954254 30960561 + MGP_CASTEiJ_P0046521 Ndufv3 protein_coding protein_coding MGP_CASTEiJ_T0000950.1 MGP_CASTEiJ_G0000886.1 mouse_genomes_project 17 53415980 53417962 - TEC TEC MGP_CASTEiJ_T0045917.1 MGP_CASTEiJ_G0022574.1 mouse_genomes_project 17 23952599 23964106 - MGP_CASTEiJ_P0045917 Ube2i protein_coding protein_coding MGP_CASTEiJ_T0045918.1 MGP_CASTEiJ_G0022574.1 mouse_genomes_project 17 23953026 23956589 - MGP_CASTEiJ_P0045918 Ube2i protein_coding protein_coding MGP_CASTEiJ_T0045919.1 MGP_CASTEiJ_G0022574.1 mouse_genomes_project 17 23953026 23964637 - MGP_CASTEiJ_P0045919 Ube2i protein_coding protein_coding MGP_CASTEiJ_T0045920.1 MGP_CASTEiJ_G0022574.1 mouse_genomes_project 17 23953026 23964257 - MGP_CASTEiJ_P0045920 Ube2i protein_coding protein_coding MGP_CASTEiJ_T0045921.1 MGP_CASTEiJ_G0022574.1 mouse_genomes_project 17 23953071 23965387 - MGP_CASTEiJ_P0045921 Ube2i protein_coding protein_coding MGP_CASTEiJ_T0045922.1 MGP_CASTEiJ_G0022574.1 mouse_genomes_project 17 23955191 23956058 - Ube2i protein_coding retained_intron MGP_CASTEiJ_T0045923.1 MGP_CASTEiJ_G0022574.1 mouse_genomes_project 17 23955861 23964313 - MGP_CASTEiJ_P0045923 Ube2i protein_coding protein_coding MGP_CASTEiJ_T0045924.1 MGP_CASTEiJ_G0022574.1 mouse_genomes_project 17 23957287 23964590 - MGP_CASTEiJ_P0045924 Ube2i protein_coding protein_coding MGP_CASTEiJ_T0045925.1 MGP_CASTEiJ_G0022574.1 mouse_genomes_project 17 23959128 23965065 - MGP_CASTEiJ_P0045925 Ube2i protein_coding protein_coding MGP_CASTEiJ_T0045926.1 MGP_CASTEiJ_G0022574.1 mouse_genomes_project 17 23959973 23964323 - MGP_CASTEiJ_P0045926 Ube2i protein_coding protein_coding MGP_CASTEiJ_T0045927.1 MGP_CASTEiJ_G0022574.1 mouse_genomes_project 17 23960122 23963878 - MGP_CASTEiJ_P0045927 Ube2i protein_coding protein_coding MGP_CASTEiJ_T0045928.1 MGP_CASTEiJ_G0022574.1 mouse_genomes_project 17 23963385 23963982 - Ube2i protein_coding processed_transcript MGP_CASTEiJ_T0016825.1 MGP_CASTEiJ_G0014664.1 mouse_genomes_project 17 34780501 34781499 - 1110038B12Rik processed_transcript retained_intron MGP_CASTEiJ_T0016826.1 MGP_CASTEiJ_G0014664.1 mouse_genomes_project 17 34780504 34782781 - 1110038B12Rik processed_transcript lincRNA MGP_CASTEiJ_T0016827.1 MGP_CASTEiJ_G0014664.1 mouse_genomes_project 17 34780504 34782758 - 1110038B12Rik processed_transcript lincRNA MGP_CASTEiJ_T0016828.1 MGP_CASTEiJ_G0014664.1 mouse_genomes_project 17 34780504 34782766 - 1110038B12Rik processed_transcript retained_intron MGP_CASTEiJ_T0016829.1 MGP_CASTEiJ_G0014664.1 mouse_genomes_project 17 34780505 34782744 - 1110038B12Rik processed_transcript retained_intron MGP_CASTEiJ_T0016830.1 MGP_CASTEiJ_G0014664.1 mouse_genomes_project 17 34780506 34782778 - 1110038B12Rik processed_transcript lincRNA MGP_CASTEiJ_T0016831.1 MGP_CASTEiJ_G0014664.1 mouse_genomes_project 17 34781706 34782778 - 1110038B12Rik processed_transcript retained_intron MGP_CASTEiJ_T0016832.1 MGP_CASTEiJ_G0014664.1 mouse_genomes_project 17 34781854 34782772 - 1110038B12Rik processed_transcript retained_intron MGP_CASTEiJ_T0048005.1 MGP_CASTEiJ_G0023128.1 mouse_genomes_project 17 58094952 58101143 - MGP_CASTEiJ_P0048005 Arrdc5 protein_coding protein_coding MGP_CASTEiJ_T0102113.1 MGP_CASTEiJ_G0038838.1 mouse_genomes_project 17 16288134 16289414 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099530.1 MGP_CASTEiJ_G0036443.1 mouse_genomes_project 17 34893140 34893244 + Gm23421 snRNA snRNA MGP_CASTEiJ_T0045702.1 MGP_CASTEiJ_G0022521.1 mouse_genomes_project 17 22817769 22847800 - MGP_CASTEiJ_P0045702 Ccnf protein_coding protein_coding MGP_CASTEiJ_T0046199.1 MGP_CASTEiJ_G0022640.1 mouse_genomes_project 17 25938887 26010439 + MGP_CASTEiJ_P0046199 Itpr3 protein_coding protein_coding MGP_CASTEiJ_T0048467.1 MGP_CASTEiJ_G0023285.1 mouse_genomes_project 17 88073909 88104901 - MGP_CASTEiJ_P0048467 Abcg5 protein_coding protein_coding MGP_CASTEiJ_T0048468.1 MGP_CASTEiJ_G0023285.1 mouse_genomes_project 17 88074161 88104082 - MGP_CASTEiJ_P0048468 Abcg5 protein_coding protein_coding MGP_CASTEiJ_T0048469.1 MGP_CASTEiJ_G0023285.1 mouse_genomes_project 17 88089962 88094415 - Abcg5 protein_coding processed_transcript MGP_CASTEiJ_T0048470.1 MGP_CASTEiJ_G0023285.1 mouse_genomes_project 17 88090440 88096495 - Abcg5 protein_coding retained_intron MGP_CASTEiJ_T0045278.1 MGP_CASTEiJ_G0022367.1 mouse_genomes_project 17 5139794 5149010 + MGP_CASTEiJ_P0045278 protein_coding protein_coding MGP_CASTEiJ_T0047855.1 MGP_CASTEiJ_G0023073.1 mouse_genomes_project 17 49604513 49615685 + MGP_CASTEiJ_P0047855 Treml4 protein_coding protein_coding MGP_CASTEiJ_T0047856.1 MGP_CASTEiJ_G0023073.1 mouse_genomes_project 17 49604555 49614819 + MGP_CASTEiJ_P0047856 Treml4 protein_coding protein_coding MGP_CASTEiJ_T0047857.1 MGP_CASTEiJ_G0023073.1 mouse_genomes_project 17 49604555 49614819 + MGP_CASTEiJ_P0047857 Treml4 protein_coding protein_coding MGP_CASTEiJ_T0047858.1 MGP_CASTEiJ_G0023073.1 mouse_genomes_project 17 49604559 49614992 + MGP_CASTEiJ_P0047858 Treml4 protein_coding protein_coding MGP_CASTEiJ_T0047859.1 MGP_CASTEiJ_G0023073.1 mouse_genomes_project 17 49604591 49614826 + MGP_CASTEiJ_P0047859 Treml4 protein_coding protein_coding MGP_CASTEiJ_T0047860.1 MGP_CASTEiJ_G0023073.1 mouse_genomes_project 17 49612740 49614838 + Treml4 protein_coding retained_intron MGP_CASTEiJ_T0048303.1 MGP_CASTEiJ_G0023218.1 mouse_genomes_project 17 74390949 74473038 + MGP_CASTEiJ_P0048303 Clip4 protein_coding protein_coding MGP_CASTEiJ_T0048304.1 MGP_CASTEiJ_G0023218.1 mouse_genomes_project 17 74391692 74473044 + MGP_CASTEiJ_P0048304 Clip4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099538.1 MGP_CASTEiJ_G0036451.1 mouse_genomes_project 17 50718135 50718296 + Gm22978 snRNA snRNA MGP_CASTEiJ_T0048372.1 MGP_CASTEiJ_G0023243.1 mouse_genomes_project 17 81792476 81880241 - MGP_CASTEiJ_P0048372 Heatr5b protein_coding protein_coding MGP_CASTEiJ_T0045291.1 MGP_CASTEiJ_G0022376.1 mouse_genomes_project 17 5654703 5682797 + MGP_CASTEiJ_P0045291 Ccr6 protein_coding protein_coding MGP_CASTEiJ_T0045292.1 MGP_CASTEiJ_G0022376.1 mouse_genomes_project 17 5660928 5682797 + MGP_CASTEiJ_P0045292 Ccr6 protein_coding protein_coding MGP_CASTEiJ_T0045293.1 MGP_CASTEiJ_G0022376.1 mouse_genomes_project 17 5662240 5682797 + MGP_CASTEiJ_P0045293 Ccr6 protein_coding protein_coding MGP_CASTEiJ_T0045294.1 MGP_CASTEiJ_G0022376.1 mouse_genomes_project 17 5662240 5682797 + MGP_CASTEiJ_P0045294 Ccr6 protein_coding protein_coding MGP_CASTEiJ_T0045295.1 MGP_CASTEiJ_G0022376.1 mouse_genomes_project 17 5662240 5682797 + MGP_CASTEiJ_P0045295 Ccr6 protein_coding protein_coding MGP_CASTEiJ_T0045296.1 MGP_CASTEiJ_G0022376.1 mouse_genomes_project 17 5662240 5682797 + MGP_CASTEiJ_P0045296 Ccr6 protein_coding protein_coding MGP_CASTEiJ_T0045778.1 MGP_CASTEiJ_G0022543.1 mouse_genomes_project 17 23353948 23368020 - MGP_CASTEiJ_P0045778 Tbl3 protein_coding protein_coding MGP_CASTEiJ_T0045787.1 MGP_CASTEiJ_G0022543.1 mouse_genomes_project 17 23356462 23367991 - Tbl3 protein_coding retained_intron MGP_CASTEiJ_T0045788.1 MGP_CASTEiJ_G0022543.1 mouse_genomes_project 17 23356890 23358512 - MGP_CASTEiJ_P0045788 Tbl3 protein_coding protein_coding MGP_CASTEiJ_T0045789.1 MGP_CASTEiJ_G0022543.1 mouse_genomes_project 17 23358022 23359329 - Tbl3 protein_coding retained_intron MGP_CASTEiJ_T0045790.1 MGP_CASTEiJ_G0022543.1 mouse_genomes_project 17 23364982 23366176 - Tbl3 protein_coding retained_intron MGP_CASTEiJ_T0000952.1 MGP_CASTEiJ_G0000888.1 mouse_genomes_project 17 53458823 53460695 + TEC TEC MGP_CASTEiJ_T0047503.1 MGP_CASTEiJ_G0022978.1 mouse_genomes_project 17 43821647 43897481 + MGP_CASTEiJ_P0047503 Tnfrsf21 protein_coding protein_coding MGP_CASTEiJ_T0047504.1 MGP_CASTEiJ_G0022978.1 mouse_genomes_project 17 43846030 43896283 + MGP_CASTEiJ_P0047504 Tnfrsf21 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045804.1 MGP_CASTEiJ_G0022548.1 mouse_genomes_project 17 23398586 23405872 + MGP_CASTEiJ_P0045804 Msrb1 protein_coding protein_coding MGP_CASTEiJ_T0045805.1 MGP_CASTEiJ_G0022548.1 mouse_genomes_project 17 23398626 23405865 + MGP_CASTEiJ_P0045805 Msrb1 protein_coding protein_coding MGP_CASTEiJ_T0102145.1 MGP_CASTEiJ_G0038870.1 mouse_genomes_project 17 34170113 34170268 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0009951.1 MGP_CASTEiJ_G0008139.1 mouse_genomes_project 17 81895368 81895478 - Gm26377 miRNA miRNA MGP_CASTEiJ_T0047554.1 MGP_CASTEiJ_G0022995.1 mouse_genomes_project 17 46528338 46541980 + MGP_CASTEiJ_P0047554 Aars2 protein_coding protein_coding MGP_CASTEiJ_T0048307.1 MGP_CASTEiJ_G0023220.1 mouse_genomes_project 17 75474549 75489048 + MGP_CASTEiJ_P0048307 Ypel5 protein_coding protein_coding MGP_CASTEiJ_T0016844.1 MGP_CASTEiJ_G0014669.1 mouse_genomes_project 17 89094589 89110594 - Six3os1 processed_transcript antisense MGP_CASTEiJ_T0016845.1 MGP_CASTEiJ_G0014669.1 mouse_genomes_project 17 89095870 89113611 - Six3os1 processed_transcript antisense MGP_CASTEiJ_T0016846.1 MGP_CASTEiJ_G0014669.1 mouse_genomes_project 17 89102613 89113604 - Six3os1 processed_transcript antisense MGP_CASTEiJ_T0016847.1 MGP_CASTEiJ_G0014669.1 mouse_genomes_project 17 89103180 89113637 - Six3os1 processed_transcript antisense MGP_CASTEiJ_T0016848.1 MGP_CASTEiJ_G0014669.1 mouse_genomes_project 17 89104802 89113579 - Six3os1 processed_transcript antisense MGP_CASTEiJ_T0016849.1 MGP_CASTEiJ_G0014669.1 mouse_genomes_project 17 89105745 89113514 - Six3os1 processed_transcript antisense MGP_CASTEiJ_T0016850.1 MGP_CASTEiJ_G0014669.1 mouse_genomes_project 17 89106491 89113624 - Six3os1 processed_transcript retained_intron MGP_CASTEiJ_T0016851.1 MGP_CASTEiJ_G0014669.1 mouse_genomes_project 17 89106875 89113462 - Six3os1 processed_transcript antisense MGP_CASTEiJ_T0016852.1 MGP_CASTEiJ_G0014669.1 mouse_genomes_project 17 89106875 89113460 - Six3os1 processed_transcript antisense MGP_CASTEiJ_T0016853.1 MGP_CASTEiJ_G0014669.1 mouse_genomes_project 17 89108128 89113514 - Six3os1 processed_transcript antisense MGP_CASTEiJ_T0016854.1 MGP_CASTEiJ_G0014669.1 mouse_genomes_project 17 89108456 89111492 - Six3os1 processed_transcript antisense MGP_CASTEiJ_T0016855.1 MGP_CASTEiJ_G0014669.1 mouse_genomes_project 17 89108936 89113312 - Six3os1 processed_transcript antisense MGP_CASTEiJ_T0016856.1 MGP_CASTEiJ_G0014669.1 mouse_genomes_project 17 89108937 89113597 - Six3os1 processed_transcript antisense MGP_CASTEiJ_T0009913.1 MGP_CASTEiJ_G0008101.1 mouse_genomes_project 17 25790197 25790255 + Gm27775 miRNA miRNA MGP_CASTEiJ_T0046433.1 MGP_CASTEiJ_G0022692.1 mouse_genomes_project 17 28676975 28702888 - MGP_CASTEiJ_P0046433 Tmem217 protein_coding protein_coding MGP_CASTEiJ_T0046434.1 MGP_CASTEiJ_G0022692.1 mouse_genomes_project 17 28676975 28702888 - MGP_CASTEiJ_P0046434 Tmem217 protein_coding protein_coding MGP_CASTEiJ_T0048507.1 MGP_CASTEiJ_G0023301.1 mouse_genomes_project 17 90609110 90634626 - MGP_CASTEiJ_P0048507 Pigf protein_coding protein_coding MGP_CASTEiJ_T0048056.1 MGP_CASTEiJ_G0023137.1 mouse_genomes_project 17 58435818 58450302 - MGP_CASTEiJ_P0048056 Lonp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048057.1 MGP_CASTEiJ_G0023137.1 mouse_genomes_project 17 58435828 58450604 - MGP_CASTEiJ_P0048057 Lonp1 protein_coding protein_coding MGP_CASTEiJ_T0012844.1 MGP_CASTEiJ_G0011007.1 mouse_genomes_project 17 25087832 25090121 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046944.1 MGP_CASTEiJ_G0022812.1 mouse_genomes_project 17 34430967 34438904 + MGP_CASTEiJ_P0046944 Atf6b protein_coding protein_coding MGP_CASTEiJ_T0046945.1 MGP_CASTEiJ_G0022812.1 mouse_genomes_project 17 34431022 34432970 + MGP_CASTEiJ_P0046945 Atf6b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046946.1 MGP_CASTEiJ_G0022812.1 mouse_genomes_project 17 34431022 34433025 + MGP_CASTEiJ_P0046946 Atf6b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046947.1 MGP_CASTEiJ_G0022812.1 mouse_genomes_project 17 34431032 34438709 + MGP_CASTEiJ_P0046947 Atf6b protein_coding protein_coding MGP_CASTEiJ_T0046948.1 MGP_CASTEiJ_G0022812.1 mouse_genomes_project 17 34435456 34435933 + Atf6b protein_coding retained_intron MGP_CASTEiJ_T0046569.1 MGP_CASTEiJ_G0022726.1 mouse_genomes_project 17 31814509 31831926 - MGP_CASTEiJ_P0046569 Akap8 protein_coding protein_coding MGP_CASTEiJ_T0016816.1 MGP_CASTEiJ_G0014660.1 mouse_genomes_project 17 33373944 33375558 + Gm17251 processed_transcript processed_transcript MGP_CASTEiJ_T0046408.1 MGP_CASTEiJ_G0022686.1 mouse_genomes_project 17 28394089 28432081 + MGP_CASTEiJ_P0046408 BC004004 protein_coding protein_coding MGP_CASTEiJ_T0046409.1 MGP_CASTEiJ_G0022686.1 mouse_genomes_project 17 28394144 28430712 + MGP_CASTEiJ_P0046409 BC004004 protein_coding protein_coding MGP_CASTEiJ_T0046410.1 MGP_CASTEiJ_G0022686.1 mouse_genomes_project 17 28394252 28410260 + BC004004 protein_coding retained_intron MGP_CASTEiJ_T0046411.1 MGP_CASTEiJ_G0022686.1 mouse_genomes_project 17 28399166 28430716 + MGP_CASTEiJ_P0046411 BC004004 protein_coding protein_coding MGP_CASTEiJ_T0046412.1 MGP_CASTEiJ_G0022686.1 mouse_genomes_project 17 28426196 28430716 + BC004004 protein_coding processed_transcript MGP_CASTEiJ_T0048201.1 MGP_CASTEiJ_G0023195.1 mouse_genomes_project 17 68978589 69452682 - MGP_CASTEiJ_P0048201 Ptprm protein_coding unknown_likely_coding MGP_CASTEiJ_T0048202.1 MGP_CASTEiJ_G0023195.1 mouse_genomes_project 17 69004439 69729677 - MGP_CASTEiJ_P0048202 Ptprm protein_coding protein_coding MGP_CASTEiJ_T0048203.1 MGP_CASTEiJ_G0023195.1 mouse_genomes_project 17 69154628 69729241 - MGP_CASTEiJ_P0048203 Ptprm protein_coding unknown_likely_coding MGP_CASTEiJ_T0102119.1 MGP_CASTEiJ_G0038844.1 mouse_genomes_project 17 17804709 17805607 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0009924.1 MGP_CASTEiJ_G0008112.1 mouse_genomes_project 17 30336566 30336656 + Gm24026 miRNA miRNA MGP_CASTEiJ_T0046431.1 MGP_CASTEiJ_G0022690.1 mouse_genomes_project 17 28639314 28642952 + MGP_CASTEiJ_P0046431 Pim1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045976.1 MGP_CASTEiJ_G0022588.1 mouse_genomes_project 17 24465976 24470038 + MGP_CASTEiJ_P0045976 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0098353.1 MGP_CASTEiJ_G0035284.1 mouse_genomes_project 17 2274676 2275651 - pseudogene pseudogene MGP_CASTEiJ_T0003632.1 MGP_CASTEiJ_G0003277.1 mouse_genomes_project 17 34812417 34823019 - antisense antisense MGP_CASTEiJ_T0012859.1 MGP_CASTEiJ_G0011022.1 mouse_genomes_project 17 36597829 36598197 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048553.1 MGP_CASTEiJ_G0023315.1 mouse_genomes_project 17 92303571 92364421 + MGP_CASTEiJ_P0048553 Ppp1r21 protein_coding protein_coding MGP_CASTEiJ_T0048554.1 MGP_CASTEiJ_G0023315.1 mouse_genomes_project 17 92303669 92316888 + Ppp1r21 protein_coding retained_intron MGP_CASTEiJ_T0048555.1 MGP_CASTEiJ_G0023315.1 mouse_genomes_project 17 92338335 92342023 + Ppp1r21 protein_coding retained_intron MGP_CASTEiJ_T0048556.1 MGP_CASTEiJ_G0023315.1 mouse_genomes_project 17 92351069 92353344 + Ppp1r21 protein_coding retained_intron MGP_CASTEiJ_T0048557.1 MGP_CASTEiJ_G0023315.1 mouse_genomes_project 17 92351187 92355203 + Ppp1r21 protein_coding retained_intron MGP_CASTEiJ_T0048558.1 MGP_CASTEiJ_G0023315.1 mouse_genomes_project 17 92354752 92364419 + Ppp1r21 protein_coding retained_intron MGP_CASTEiJ_T0047349.1 MGP_CASTEiJ_G0022893.1 mouse_genomes_project 17 36816399 36818640 - MGP_CASTEiJ_P0047349 protein_coding protein_coding MGP_CASTEiJ_T0045518.1 MGP_CASTEiJ_G0022453.1 mouse_genomes_project 17 18697042 18697939 + MGP_CASTEiJ_P0045518 Vmn1r226 protein_coding protein_coding MGP_CASTEiJ_T0048370.1 MGP_CASTEiJ_G0023242.1 mouse_genomes_project 17 81679829 81774093 - MGP_CASTEiJ_P0048370 Strn protein_coding protein_coding MGP_CASTEiJ_T0048371.1 MGP_CASTEiJ_G0023242.1 mouse_genomes_project 17 81693526 81711170 - MGP_CASTEiJ_P0048371 Strn protein_coding protein_coding MGP_CASTEiJ_T0046867.1 MGP_CASTEiJ_G0022799.1 mouse_genomes_project 17 34077421 34143147 + MGP_CASTEiJ_P0046867 BC051142 protein_coding protein_coding MGP_CASTEiJ_T0046868.1 MGP_CASTEiJ_G0022799.1 mouse_genomes_project 17 34077422 34095473 + BC051142 protein_coding processed_transcript MGP_CASTEiJ_T0046869.1 MGP_CASTEiJ_G0022799.1 mouse_genomes_project 17 34077422 34123023 + MGP_CASTEiJ_P0046869 BC051142 protein_coding protein_coding MGP_CASTEiJ_T0046870.1 MGP_CASTEiJ_G0022799.1 mouse_genomes_project 17 34077422 34143147 + MGP_CASTEiJ_P0046870 BC051142 protein_coding protein_coding MGP_CASTEiJ_T0046871.1 MGP_CASTEiJ_G0022799.1 mouse_genomes_project 17 34077423 34098594 + BC051142 protein_coding retained_intron MGP_CASTEiJ_T0046872.1 MGP_CASTEiJ_G0022799.1 mouse_genomes_project 17 34077442 34143147 + MGP_CASTEiJ_P0046872 BC051142 protein_coding protein_coding MGP_CASTEiJ_T0046873.1 MGP_CASTEiJ_G0022799.1 mouse_genomes_project 17 34093871 34143148 + MGP_CASTEiJ_P0046873 BC051142 protein_coding unknown_likely_coding MGP_CASTEiJ_T0046874.1 MGP_CASTEiJ_G0022799.1 mouse_genomes_project 17 34094783 34143148 + MGP_CASTEiJ_P0046874 BC051142 protein_coding unknown_likely_coding MGP_CASTEiJ_T0046875.1 MGP_CASTEiJ_G0022799.1 mouse_genomes_project 17 34094857 34117374 + MGP_CASTEiJ_P0046875 BC051142 protein_coding protein_coding MGP_CASTEiJ_T0046876.1 MGP_CASTEiJ_G0022799.1 mouse_genomes_project 17 34095468 34113563 + BC051142 protein_coding processed_transcript MGP_CASTEiJ_T0046877.1 MGP_CASTEiJ_G0022799.1 mouse_genomes_project 17 34095490 34099358 + MGP_CASTEiJ_P0046877 BC051142 protein_coding protein_coding MGP_CASTEiJ_T0100772.1 MGP_CASTEiJ_G0037685.1 mouse_genomes_project 17 67187742 67187874 - Gm25344 snoRNA snoRNA MGP_CASTEiJ_T0006790.1 MGP_CASTEiJ_G0005603.1 mouse_genomes_project 17 61941063 62099868 - Gm29051 lincRNA lincRNA MGP_CASTEiJ_T0003666.1 MGP_CASTEiJ_G0003304.1 mouse_genomes_project 17 89840264 89842280 - 2010106C02Rik antisense antisense MGP_CASTEiJ_T0046106.1 MGP_CASTEiJ_G0022620.1 mouse_genomes_project 17 24998495 25003412 - MGP_CASTEiJ_P0046106 Arhgdig protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046108.1 MGP_CASTEiJ_G0022620.1 mouse_genomes_project 17 25001452 25003619 - MGP_CASTEiJ_P0046108 Arhgdig protein_coding protein_coding MGP_CASTEiJ_T0046109.1 MGP_CASTEiJ_G0022620.1 mouse_genomes_project 17 25001666 25003638 - MGP_CASTEiJ_P0046109 Arhgdig protein_coding protein_coding MGP_CASTEiJ_T0046110.1 MGP_CASTEiJ_G0022620.1 mouse_genomes_project 17 25001705 25010057 - Arhgdig protein_coding processed_transcript MGP_CASTEiJ_T0046111.1 MGP_CASTEiJ_G0022620.1 mouse_genomes_project 17 25001760 25003413 - Arhgdig protein_coding retained_intron MGP_CASTEiJ_T0045221.1 MGP_CASTEiJ_G0022351.1 mouse_genomes_project 17 604340 605000 + MGP_CASTEiJ_P0045221 Cldn20 protein_coding protein_coding MGP_CASTEiJ_T0047724.1 MGP_CASTEiJ_G0023034.1 mouse_genomes_project 17 47792472 47816569 - MGP_CASTEiJ_P0047724 Ppp2r5d protein_coding protein_coding MGP_CASTEiJ_T0012900.1 MGP_CASTEiJ_G0011063.1 mouse_genomes_project 17 75844227 75845466 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099548.1 MGP_CASTEiJ_G0036461.1 mouse_genomes_project 17 83256469 83256574 + Gm23125 snRNA snRNA MGP_CASTEiJ_T0048101.1 MGP_CASTEiJ_G0023164.1 mouse_genomes_project 17 59088415 59114439 - MGP_CASTEiJ_P0048101 C3 protein_coding protein_coding MGP_CASTEiJ_T0048102.1 MGP_CASTEiJ_G0023164.1 mouse_genomes_project 17 59088452 59109109 - MGP_CASTEiJ_P0048102 C3 protein_coding protein_coding MGP_CASTEiJ_T0048103.1 MGP_CASTEiJ_G0023164.1 mouse_genomes_project 17 59090657 59114306 - MGP_CASTEiJ_P0048103 C3 protein_coding protein_coding MGP_CASTEiJ_T0048104.1 MGP_CASTEiJ_G0023164.1 mouse_genomes_project 17 59101945 59106220 - C3 protein_coding processed_transcript MGP_CASTEiJ_T0006770.1 MGP_CASTEiJ_G0005590.1 mouse_genomes_project 17 36350796 36355863 + Gm20546 lincRNA lincRNA MGP_CASTEiJ_T0046864.1 MGP_CASTEiJ_G0022797.1 mouse_genomes_project 17 34030056 34046402 + MGP_CASTEiJ_P0046864 Btnl2 protein_coding protein_coding MGP_CASTEiJ_T0046865.1 MGP_CASTEiJ_G0022797.1 mouse_genomes_project 17 34030056 34046401 + MGP_CASTEiJ_P0046865 Btnl2 protein_coding protein_coding MGP_CASTEiJ_T0098542.1 MGP_CASTEiJ_G0035473.1 mouse_genomes_project 17 65281696 65281807 - Gm25348 rRNA rRNA MGP_CASTEiJ_T0045503.1 MGP_CASTEiJ_G0022438.1 mouse_genomes_project 17 15921002 16998213 + MGP_CASTEiJ_P0045503 protein_coding protein_coding MGP_CASTEiJ_T0045996.1 MGP_CASTEiJ_G0022595.1 mouse_genomes_project 17 24542045 24544522 - MGP_CASTEiJ_P0045996 Metrn protein_coding protein_coding MGP_CASTEiJ_T0045997.1 MGP_CASTEiJ_G0022595.1 mouse_genomes_project 17 24542424 24544613 - MGP_CASTEiJ_P0045997 Metrn protein_coding protein_coding MGP_CASTEiJ_T0047649.1 MGP_CASTEiJ_G0023014.1 mouse_genomes_project 17 47343957 47348093 - MGP_CASTEiJ_P0047649 Polr1c protein_coding protein_coding MGP_CASTEiJ_T0047650.1 MGP_CASTEiJ_G0023014.1 mouse_genomes_project 17 47344138 47346612 - MGP_CASTEiJ_P0047650 Polr1c protein_coding protein_coding MGP_CASTEiJ_T0047651.1 MGP_CASTEiJ_G0023014.1 mouse_genomes_project 17 47344561 47347971 - Polr1c protein_coding retained_intron MGP_CASTEiJ_T0047652.1 MGP_CASTEiJ_G0023014.1 mouse_genomes_project 17 47344650 47348007 - MGP_CASTEiJ_P0047652 Polr1c protein_coding protein_coding MGP_CASTEiJ_T0047653.1 MGP_CASTEiJ_G0023014.1 mouse_genomes_project 17 47344872 47348007 - MGP_CASTEiJ_P0047653 Polr1c protein_coding protein_coding MGP_CASTEiJ_T0047654.1 MGP_CASTEiJ_G0023014.1 mouse_genomes_project 17 47344970 47348007 - MGP_CASTEiJ_P0047654 Polr1c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047655.1 MGP_CASTEiJ_G0023014.1 mouse_genomes_project 17 47345299 47348006 - Polr1c protein_coding retained_intron MGP_CASTEiJ_T0047656.1 MGP_CASTEiJ_G0023014.1 mouse_genomes_project 17 47347337 47348007 - Polr1c protein_coding retained_intron MGP_CASTEiJ_T0012915.1 MGP_CASTEiJ_G0011078.1 mouse_genomes_project 17 96455700 96456874 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0047332.1 MGP_CASTEiJ_G0022887.1 mouse_genomes_project 17 36357831 36360041 - MGP_CASTEiJ_P0047332 Rpp21 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047333.1 MGP_CASTEiJ_G0022887.1 mouse_genomes_project 17 36357853 36360028 - Rpp21 protein_coding retained_intron MGP_CASTEiJ_T0047334.1 MGP_CASTEiJ_G0022887.1 mouse_genomes_project 17 36357853 36360251 - MGP_CASTEiJ_P0047334 Rpp21 protein_coding protein_coding MGP_CASTEiJ_T0047335.1 MGP_CASTEiJ_G0022887.1 mouse_genomes_project 17 36357859 36358538 - Rpp21 protein_coding retained_intron MGP_CASTEiJ_T0047336.1 MGP_CASTEiJ_G0022887.1 mouse_genomes_project 17 36357898 36359795 - MGP_CASTEiJ_P0047336 Rpp21 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047337.1 MGP_CASTEiJ_G0022887.1 mouse_genomes_project 17 36358130 36360040 - Rpp21 protein_coding retained_intron MGP_CASTEiJ_T0098543.1 MGP_CASTEiJ_G0035474.1 mouse_genomes_project 17 74081884 74081991 - Gm23964 rRNA rRNA MGP_CASTEiJ_T0012866.1 MGP_CASTEiJ_G0011029.1 mouse_genomes_project 17 38180834 38181771 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016841.1 MGP_CASTEiJ_G0014668.1 mouse_genomes_project 17 74136495 74184042 - Trmt61b processed_transcript processed_transcript MGP_CASTEiJ_T0016842.1 MGP_CASTEiJ_G0014668.1 mouse_genomes_project 17 74136530 74184033 - Trmt61b processed_transcript processed_transcript MGP_CASTEiJ_T0016843.1 MGP_CASTEiJ_G0014668.1 mouse_genomes_project 17 74172232 74183537 - Trmt61b processed_transcript processed_transcript MGP_CASTEiJ_T0045951.1 MGP_CASTEiJ_G0022582.1 mouse_genomes_project 17 24193224 24198231 + MGP_CASTEiJ_P0045951 Tekt4 protein_coding protein_coding MGP_CASTEiJ_T0046260.1 MGP_CASTEiJ_G0022658.1 mouse_genomes_project 17 27157263 27190497 + MGP_CASTEiJ_P0046260 Scube3 protein_coding protein_coding MGP_CASTEiJ_T0046261.1 MGP_CASTEiJ_G0022658.1 mouse_genomes_project 17 27168434 27187159 + Scube3 protein_coding processed_transcript MGP_CASTEiJ_T0046262.1 MGP_CASTEiJ_G0022658.1 mouse_genomes_project 17 27169464 27185789 + MGP_CASTEiJ_P0046262 Scube3 protein_coding protein_coding MGP_CASTEiJ_T0046263.1 MGP_CASTEiJ_G0022658.1 mouse_genomes_project 17 27176407 27188671 + Scube3 protein_coding processed_transcript MGP_CASTEiJ_T0046264.1 MGP_CASTEiJ_G0022658.1 mouse_genomes_project 17 27181468 27183308 + Scube3 protein_coding retained_intron MGP_CASTEiJ_T0047911.1 MGP_CASTEiJ_G0023086.1 mouse_genomes_project 17 51052454 51205749 + Kif6 protein_coding retained_intron MGP_CASTEiJ_T0047912.1 MGP_CASTEiJ_G0023086.1 mouse_genomes_project 17 51052457 51122920 + MGP_CASTEiJ_P0047912 Kif6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047913.1 MGP_CASTEiJ_G0023086.1 mouse_genomes_project 17 51052490 51374501 + MGP_CASTEiJ_P0047913 Kif6 protein_coding protein_coding MGP_CASTEiJ_T0047914.1 MGP_CASTEiJ_G0023086.1 mouse_genomes_project 17 51162526 51205749 + Kif6 protein_coding retained_intron MGP_CASTEiJ_T0047915.1 MGP_CASTEiJ_G0023086.1 mouse_genomes_project 17 51187113 51205751 + Kif6 protein_coding retained_intron MGP_CASTEiJ_T0047916.1 MGP_CASTEiJ_G0023086.1 mouse_genomes_project 17 51204271 51209390 + Kif6 protein_coding retained_intron MGP_CASTEiJ_T0047917.1 MGP_CASTEiJ_G0023086.1 mouse_genomes_project 17 51346359 51374501 + Kif6 protein_coding retained_intron MGP_CASTEiJ_T0045543.1 MGP_CASTEiJ_G0022469.1 mouse_genomes_project 17 19608764 19630882 + MGP_CASTEiJ_P0045543 Zfp53 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009925.1 MGP_CASTEiJ_G0008113.1 mouse_genomes_project 17 31892661 31892720 + Gm22201 miRNA miRNA MGP_CASTEiJ_T0102131.1 MGP_CASTEiJ_G0038856.1 mouse_genomes_project 17 21503862 21506363 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0046275.1 MGP_CASTEiJ_G0022661.1 mouse_genomes_project 17 27260547 27336779 + MGP_CASTEiJ_P0046275 Ppard protein_coding protein_coding MGP_CASTEiJ_T0046276.1 MGP_CASTEiJ_G0022661.1 mouse_genomes_project 17 27260559 27331675 + Ppard protein_coding retained_intron MGP_CASTEiJ_T0046277.1 MGP_CASTEiJ_G0022661.1 mouse_genomes_project 17 27260575 27335257 + Ppard protein_coding processed_transcript MGP_CASTEiJ_T0046278.1 MGP_CASTEiJ_G0022661.1 mouse_genomes_project 17 27260600 27335335 + Ppard protein_coding retained_intron MGP_CASTEiJ_T0046279.1 MGP_CASTEiJ_G0022661.1 mouse_genomes_project 17 27304066 27305493 + Ppard protein_coding processed_transcript MGP_CASTEiJ_T0046280.1 MGP_CASTEiJ_G0022661.1 mouse_genomes_project 17 27304552 27334108 + MGP_CASTEiJ_P0046280 Ppard protein_coding protein_coding MGP_CASTEiJ_T0047685.1 MGP_CASTEiJ_G0023021.1 mouse_genomes_project 17 47509338 47512180 + MGP_CASTEiJ_P0047685 Crip3 protein_coding protein_coding MGP_CASTEiJ_T0047686.1 MGP_CASTEiJ_G0023021.1 mouse_genomes_project 17 47509354 47511981 + Crip3 protein_coding retained_intron MGP_CASTEiJ_T0047687.1 MGP_CASTEiJ_G0023021.1 mouse_genomes_project 17 47509354 47512175 + MGP_CASTEiJ_P0047687 Crip3 protein_coding protein_coding MGP_CASTEiJ_T0047688.1 MGP_CASTEiJ_G0023021.1 mouse_genomes_project 17 47509363 47511819 + MGP_CASTEiJ_P0047688 Crip3 protein_coding protein_coding MGP_CASTEiJ_T0047689.1 MGP_CASTEiJ_G0023021.1 mouse_genomes_project 17 47509382 47510890 + Crip3 protein_coding processed_transcript MGP_CASTEiJ_T0047690.1 MGP_CASTEiJ_G0023021.1 mouse_genomes_project 17 47511079 47512126 + Crip3 protein_coding retained_intron MGP_CASTEiJ_T0047691.1 MGP_CASTEiJ_G0023021.1 mouse_genomes_project 17 47511369 47512101 + Crip3 protein_coding retained_intron MGP_CASTEiJ_T0047648.1 MGP_CASTEiJ_G0023013.1 mouse_genomes_project 17 47302957 47342337 + MGP_CASTEiJ_P0047648 Xpo5 protein_coding protein_coding MGP_CASTEiJ_T0102189.1 MGP_CASTEiJ_G0038914.1 mouse_genomes_project 17 76972928 76974735 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0048323.1 MGP_CASTEiJ_G0023229.1 mouse_genomes_project 17 77070898 77088948 - MGP_CASTEiJ_P0048323 Dpy30 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047462.1 MGP_CASTEiJ_G0022950.1 mouse_genomes_project 17 38608234 38617203 + MGP_CASTEiJ_P0047462 protein_coding protein_coding MGP_CASTEiJ_T0047463.1 MGP_CASTEiJ_G0022950.1 mouse_genomes_project 17 38608235 38618063 + MGP_CASTEiJ_P0047463 protein_coding protein_coding MGP_CASTEiJ_T0047464.1 MGP_CASTEiJ_G0022950.1 mouse_genomes_project 17 38608245 38617493 + MGP_CASTEiJ_P0047464 protein_coding protein_coding MGP_CASTEiJ_T0047465.1 MGP_CASTEiJ_G0022950.1 mouse_genomes_project 17 38617124 38618063 + MGP_CASTEiJ_P0047465 protein_coding protein_coding MGP_CASTEiJ_T0048119.1 MGP_CASTEiJ_G0023172.1 mouse_genomes_project 17 60744509 60751931 - Pdzph1 protein_coding retained_intron MGP_CASTEiJ_T0048120.1 MGP_CASTEiJ_G0023172.1 mouse_genomes_project 17 60744509 60875827 - MGP_CASTEiJ_P0048120 Pdzph1 protein_coding protein_coding MGP_CASTEiJ_T0048121.1 MGP_CASTEiJ_G0023172.1 mouse_genomes_project 17 60744671 60761308 - MGP_CASTEiJ_P0048121 Pdzph1 protein_coding protein_coding MGP_CASTEiJ_T0048447.1 MGP_CASTEiJ_G0023277.1 mouse_genomes_project 17 86782316 86795311 - MGP_CASTEiJ_P0048447 Cox7a2l protein_coding protein_coding MGP_CASTEiJ_T0048448.1 MGP_CASTEiJ_G0023277.1 mouse_genomes_project 17 86782316 86795311 - MGP_CASTEiJ_P0048448 Cox7a2l protein_coding protein_coding MGP_CASTEiJ_T0047968.1 MGP_CASTEiJ_G0023111.1 mouse_genomes_project 17 57739742 57746070 + MGP_CASTEiJ_P0047968 Shd protein_coding protein_coding MGP_CASTEiJ_T0047969.1 MGP_CASTEiJ_G0023111.1 mouse_genomes_project 17 57739783 57746082 + MGP_CASTEiJ_P0047969 Shd protein_coding unknown_likely_coding MGP_CASTEiJ_T0047082.1 MGP_CASTEiJ_G0022839.1 mouse_genomes_project 17 34932840 34935420 + Abhd16a protein_coding retained_intron MGP_CASTEiJ_T0047083.1 MGP_CASTEiJ_G0022839.1 mouse_genomes_project 17 34932868 34946572 + MGP_CASTEiJ_P0047083 Abhd16a protein_coding protein_coding MGP_CASTEiJ_T0047084.1 MGP_CASTEiJ_G0022839.1 mouse_genomes_project 17 34932891 34946541 + MGP_CASTEiJ_P0047084 Abhd16a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047085.1 MGP_CASTEiJ_G0022839.1 mouse_genomes_project 17 34933447 34935560 + Abhd16a protein_coding retained_intron MGP_CASTEiJ_T0047086.1 MGP_CASTEiJ_G0022839.1 mouse_genomes_project 17 34939925 34944525 + Abhd16a protein_coding processed_transcript MGP_CASTEiJ_T0047087.1 MGP_CASTEiJ_G0022839.1 mouse_genomes_project 17 34943516 34944280 + Abhd16a protein_coding retained_intron MGP_CASTEiJ_T0047088.1 MGP_CASTEiJ_G0022839.1 mouse_genomes_project 17 34944438 34945615 + Abhd16a protein_coding retained_intron MGP_CASTEiJ_T0045565.1 MGP_CASTEiJ_G0022480.1 mouse_genomes_project 17 20776299 20799504 + Zfp946 protein_coding processed_transcript MGP_CASTEiJ_T0045566.1 MGP_CASTEiJ_G0022480.1 mouse_genomes_project 17 20776336 20808548 + MGP_CASTEiJ_P0045566 Zfp946 protein_coding protein_coding MGP_CASTEiJ_T0045567.1 MGP_CASTEiJ_G0022480.1 mouse_genomes_project 17 20776345 20808548 + MGP_CASTEiJ_P0045567 Zfp946 protein_coding protein_coding MGP_CASTEiJ_T0045568.1 MGP_CASTEiJ_G0022480.1 mouse_genomes_project 17 20803203 20807698 + MGP_CASTEiJ_P0045568 Zfp946 protein_coding protein_coding MGP_CASTEiJ_T0047481.1 MGP_CASTEiJ_G0022966.1 mouse_genomes_project 17 41451743 41456405 + MGP_CASTEiJ_P0047481 Esp1 protein_coding protein_coding MGP_CASTEiJ_T0048221.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 72463602 73348047 + MGP_CASTEiJ_P0048221 Dlgap1 protein_coding protein_coding MGP_CASTEiJ_T0048222.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 72463775 73346348 + MGP_CASTEiJ_P0048222 Dlgap1 protein_coding protein_coding MGP_CASTEiJ_T0048223.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 72463897 73020072 + Dlgap1 protein_coding retained_intron MGP_CASTEiJ_T0048224.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 72463897 72574248 + Dlgap1 protein_coding retained_intron MGP_CASTEiJ_T0048225.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 72463902 73172240 + Dlgap1 protein_coding retained_intron MGP_CASTEiJ_T0048226.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 72463931 73342438 + MGP_CASTEiJ_P0048226 Dlgap1 protein_coding protein_coding MGP_CASTEiJ_T0048227.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 72463950 73099713 + Dlgap1 protein_coding retained_intron MGP_CASTEiJ_T0048228.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 72916129 73346425 + MGP_CASTEiJ_P0048228 Dlgap1 protein_coding protein_coding MGP_CASTEiJ_T0048229.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 73017262 73347627 + MGP_CASTEiJ_P0048229 Dlgap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048230.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 73017289 73344862 + MGP_CASTEiJ_P0048230 Dlgap1 protein_coding protein_coding MGP_CASTEiJ_T0048231.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 73023112 73101053 + Dlgap1 protein_coding retained_intron MGP_CASTEiJ_T0048232.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 73023171 73310612 + Dlgap1 protein_coding retained_intron MGP_CASTEiJ_T0048233.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 73023171 73348043 + MGP_CASTEiJ_P0048233 Dlgap1 protein_coding protein_coding MGP_CASTEiJ_T0048234.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 73023180 73345174 + MGP_CASTEiJ_P0048234 Dlgap1 protein_coding protein_coding MGP_CASTEiJ_T0048235.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 73023197 73344930 + MGP_CASTEiJ_P0048235 Dlgap1 protein_coding protein_coding MGP_CASTEiJ_T0048236.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 73065587 73235563 + Dlgap1 protein_coding retained_intron MGP_CASTEiJ_T0048237.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 73065822 73342732 + MGP_CASTEiJ_P0048237 Dlgap1 protein_coding protein_coding MGP_CASTEiJ_T0048238.1 MGP_CASTEiJ_G0023203.1 mouse_genomes_project 17 73097891 73348048 + MGP_CASTEiJ_P0048238 Dlgap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0046980.1 MGP_CASTEiJ_G0022818.1 mouse_genomes_project 17 34680558 34686298 - MGP_CASTEiJ_P0046980 Cfb protein_coding protein_coding MGP_CASTEiJ_T0046981.1 MGP_CASTEiJ_G0022818.1 mouse_genomes_project 17 34680564 34683217 - MGP_CASTEiJ_P0046981 Cfb protein_coding protein_coding MGP_CASTEiJ_T0046982.1 MGP_CASTEiJ_G0022818.1 mouse_genomes_project 17 34680574 34686706 - MGP_CASTEiJ_P0046982 Cfb protein_coding protein_coding MGP_CASTEiJ_T0046983.1 MGP_CASTEiJ_G0022818.1 mouse_genomes_project 17 34680581 34682332 - MGP_CASTEiJ_P0046983 Cfb protein_coding protein_coding MGP_CASTEiJ_T0046984.1 MGP_CASTEiJ_G0022818.1 mouse_genomes_project 17 34680602 34683502 - MGP_CASTEiJ_P0046984 Cfb protein_coding protein_coding MGP_CASTEiJ_T0046987.1 MGP_CASTEiJ_G0022818.1 mouse_genomes_project 17 34680764 34683233 - MGP_CASTEiJ_P0046987 Cfb protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045870.1 MGP_CASTEiJ_G0022563.1 mouse_genomes_project 17 23734072 23757516 - MGP_CASTEiJ_P0045870 Tmem204 protein_coding protein_coding MGP_CASTEiJ_T0045871.1 MGP_CASTEiJ_G0022563.1 mouse_genomes_project 17 23734274 23754561 - MGP_CASTEiJ_P0045871 Tmem204 protein_coding protein_coding MGP_CASTEiJ_T0006745.1 MGP_CASTEiJ_G0005571.1 mouse_genomes_project 17 28172026 28195572 - Trp53cor1 lincRNA lincRNA MGP_CASTEiJ_T0046177.1 MGP_CASTEiJ_G0022636.1 mouse_genomes_project 17 25807630 25841637 + MGP_CASTEiJ_P0046177 Syngap1 protein_coding protein_coding MGP_CASTEiJ_T0046178.1 MGP_CASTEiJ_G0022636.1 mouse_genomes_project 17 25808510 25839889 + MGP_CASTEiJ_P0046178 Syngap1 protein_coding protein_coding MGP_CASTEiJ_T0046179.1 MGP_CASTEiJ_G0022636.1 mouse_genomes_project 17 25808520 25839849 + MGP_CASTEiJ_P0046179 Syngap1 protein_coding protein_coding MGP_CASTEiJ_T0046180.1 MGP_CASTEiJ_G0022636.1 mouse_genomes_project 17 25808567 25840429 + MGP_CASTEiJ_P0046180 Syngap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046181.1 MGP_CASTEiJ_G0022636.1 mouse_genomes_project 17 25819763 25840241 + MGP_CASTEiJ_P0046181 Syngap1 protein_coding protein_coding MGP_CASTEiJ_T0046182.1 MGP_CASTEiJ_G0022636.1 mouse_genomes_project 17 25825032 25841637 + MGP_CASTEiJ_P0046182 Syngap1 protein_coding protein_coding MGP_CASTEiJ_T0046183.1 MGP_CASTEiJ_G0022636.1 mouse_genomes_project 17 25825488 25827774 + MGP_CASTEiJ_P0046183 Syngap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046184.1 MGP_CASTEiJ_G0022636.1 mouse_genomes_project 17 25827500 25828218 + Syngap1 protein_coding retained_intron MGP_CASTEiJ_T0046185.1 MGP_CASTEiJ_G0022636.1 mouse_genomes_project 17 25829969 25839870 + MGP_CASTEiJ_P0046185 Syngap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046186.1 MGP_CASTEiJ_G0022636.1 mouse_genomes_project 17 25830675 25839899 + MGP_CASTEiJ_P0046186 Syngap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046187.1 MGP_CASTEiJ_G0022636.1 mouse_genomes_project 17 25830689 25839895 + MGP_CASTEiJ_P0046187 Syngap1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0003607.1 MGP_CASTEiJ_G0003260.1 mouse_genomes_project 17 25466304 25471007 - Gm17218 antisense antisense MGP_CASTEiJ_T0006789.1 MGP_CASTEiJ_G0005602.1 mouse_genomes_project 17 57722707 57728737 - Gm16712 lincRNA lincRNA MGP_CASTEiJ_T0047451.1 MGP_CASTEiJ_G0022941.1 mouse_genomes_project 17 38252493 38255760 + MGP_CASTEiJ_P0047451 protein_coding protein_coding MGP_CASTEiJ_T0099533.1 MGP_CASTEiJ_G0036446.1 mouse_genomes_project 17 41646901 41647049 - Gm23078 snRNA snRNA MGP_CASTEiJ_T0048165.1 MGP_CASTEiJ_G0023186.1 mouse_genomes_project 17 68117237 68154667 - MGP_CASTEiJ_P0048165 Ralbp1 protein_coding protein_coding MGP_CASTEiJ_T0048166.1 MGP_CASTEiJ_G0023186.1 mouse_genomes_project 17 68117237 68153835 - MGP_CASTEiJ_P0048166 Ralbp1 protein_coding protein_coding MGP_CASTEiJ_T0099544.1 MGP_CASTEiJ_G0036457.1 mouse_genomes_project 17 75145635 75145765 - Gm24736 snRNA snRNA MGP_CASTEiJ_T0009919.1 MGP_CASTEiJ_G0008107.1 mouse_genomes_project 17 26271302 26271364 + Mir7217 miRNA miRNA MGP_CASTEiJ_T0045391.1 MGP_CASTEiJ_G0022403.1 mouse_genomes_project 17 10901597 10910608 + MGP_CASTEiJ_P0045391 protein_coding protein_coding MGP_CASTEiJ_T0012892.1 MGP_CASTEiJ_G0011055.1 mouse_genomes_project 17 63384039 63385082 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012835.1 MGP_CASTEiJ_G0010998.1 mouse_genomes_project 17 10646768 10647191 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048302.1 MGP_CASTEiJ_G0023217.1 mouse_genomes_project 17 74346118 74357637 - MGP_CASTEiJ_P0048302 BC027072 protein_coding protein_coding MGP_CASTEiJ_T0048239.1 MGP_CASTEiJ_G0023204.1 mouse_genomes_project 17 73374626 73380205 - MGP_CASTEiJ_P0048239 Tgif1 protein_coding protein_coding MGP_CASTEiJ_T0048240.1 MGP_CASTEiJ_G0023204.1 mouse_genomes_project 17 73374626 73381615 - MGP_CASTEiJ_P0048240 Tgif1 protein_coding protein_coding MGP_CASTEiJ_T0048241.1 MGP_CASTEiJ_G0023204.1 mouse_genomes_project 17 73374632 73383933 - MGP_CASTEiJ_P0048241 Tgif1 protein_coding protein_coding MGP_CASTEiJ_T0048242.1 MGP_CASTEiJ_G0023204.1 mouse_genomes_project 17 73374632 73381477 - MGP_CASTEiJ_P0048242 Tgif1 protein_coding protein_coding MGP_CASTEiJ_T0048243.1 MGP_CASTEiJ_G0023204.1 mouse_genomes_project 17 73374632 73382142 - MGP_CASTEiJ_P0048243 Tgif1 protein_coding protein_coding MGP_CASTEiJ_T0048244.1 MGP_CASTEiJ_G0023204.1 mouse_genomes_project 17 73375149 73380205 - MGP_CASTEiJ_P0048244 Tgif1 protein_coding protein_coding MGP_CASTEiJ_T0048245.1 MGP_CASTEiJ_G0023204.1 mouse_genomes_project 17 73375290 73376748 - MGP_CASTEiJ_P0048245 Tgif1 protein_coding protein_coding MGP_CASTEiJ_T0048246.1 MGP_CASTEiJ_G0023204.1 mouse_genomes_project 17 73375402 73377591 - MGP_CASTEiJ_P0048246 Tgif1 protein_coding protein_coding MGP_CASTEiJ_T0048247.1 MGP_CASTEiJ_G0023204.1 mouse_genomes_project 17 73376602 73380059 - MGP_CASTEiJ_P0048247 Tgif1 protein_coding protein_coding MGP_CASTEiJ_T0048248.1 MGP_CASTEiJ_G0023204.1 mouse_genomes_project 17 73376716 73381539 - Tgif1 protein_coding processed_transcript MGP_CASTEiJ_T0048249.1 MGP_CASTEiJ_G0023204.1 mouse_genomes_project 17 73377092 73380229 - Tgif1 protein_coding retained_intron MGP_CASTEiJ_T0048250.1 MGP_CASTEiJ_G0023204.1 mouse_genomes_project 17 73378789 73380222 - Tgif1 protein_coding processed_transcript MGP_CASTEiJ_T0012874.1 MGP_CASTEiJ_G0011037.1 mouse_genomes_project 17 42067960 42068961 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045885.1 MGP_CASTEiJ_G0022566.1 mouse_genomes_project 17 23812932 23844377 + MGP_CASTEiJ_P0045885 Clcn7 protein_coding protein_coding MGP_CASTEiJ_T0045886.1 MGP_CASTEiJ_G0022566.1 mouse_genomes_project 17 23813006 23828069 + Clcn7 protein_coding retained_intron MGP_CASTEiJ_T0045887.1 MGP_CASTEiJ_G0022566.1 mouse_genomes_project 17 23816161 23844371 + MGP_CASTEiJ_P0045887 Clcn7 protein_coding protein_coding MGP_CASTEiJ_T0045888.1 MGP_CASTEiJ_G0022566.1 mouse_genomes_project 17 23827334 23832118 + MGP_CASTEiJ_P0045888 Clcn7 protein_coding protein_coding MGP_CASTEiJ_T0045889.1 MGP_CASTEiJ_G0022566.1 mouse_genomes_project 17 23827841 23833932 + Clcn7 protein_coding processed_transcript MGP_CASTEiJ_T0045890.1 MGP_CASTEiJ_G0022566.1 mouse_genomes_project 17 23832705 23839461 + MGP_CASTEiJ_P0045890 Clcn7 protein_coding protein_coding MGP_CASTEiJ_T0045891.1 MGP_CASTEiJ_G0022566.1 mouse_genomes_project 17 23840926 23842015 + Clcn7 protein_coding retained_intron MGP_CASTEiJ_T0047962.1 MGP_CASTEiJ_G0023105.1 mouse_genomes_project 17 57512962 57614586 + MGP_CASTEiJ_P0047962 Adgre4 protein_coding protein_coding MGP_CASTEiJ_T0046487.1 MGP_CASTEiJ_G0022710.1 mouse_genomes_project 17 30596166 30631785 + MGP_CASTEiJ_P0046487 Ubash3a protein_coding protein_coding MGP_CASTEiJ_T0046488.1 MGP_CASTEiJ_G0022710.1 mouse_genomes_project 17 30596373 30606293 + MGP_CASTEiJ_P0046488 Ubash3a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046489.1 MGP_CASTEiJ_G0022710.1 mouse_genomes_project 17 30596382 30603889 + MGP_CASTEiJ_P0046489 Ubash3a protein_coding protein_coding MGP_CASTEiJ_T0046490.1 MGP_CASTEiJ_G0022710.1 mouse_genomes_project 17 30600099 30631785 + Ubash3a protein_coding processed_transcript MGP_CASTEiJ_T0046491.1 MGP_CASTEiJ_G0022710.1 mouse_genomes_project 17 30600272 30608034 + Ubash3a protein_coding processed_transcript MGP_CASTEiJ_T0047908.1 MGP_CASTEiJ_G0023085.1 mouse_genomes_project 17 50885575 51000494 - MGP_CASTEiJ_P0047908 Daam2 protein_coding protein_coding MGP_CASTEiJ_T0047909.1 MGP_CASTEiJ_G0023085.1 mouse_genomes_project 17 50887983 51000482 - MGP_CASTEiJ_P0047909 Daam2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047910.1 MGP_CASTEiJ_G0023085.1 mouse_genomes_project 17 50905202 51000486 - MGP_CASTEiJ_P0047910 Daam2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0046778.1 MGP_CASTEiJ_G0022777.1 mouse_genomes_project 17 33679750 33684790 - MGP_CASTEiJ_P0046778 Ring1 protein_coding protein_coding MGP_CASTEiJ_T0046779.1 MGP_CASTEiJ_G0022777.1 mouse_genomes_project 17 33680064 33684046 - Ring1 protein_coding retained_intron MGP_CASTEiJ_T0046780.1 MGP_CASTEiJ_G0022777.1 mouse_genomes_project 17 33684300 33684762 - Ring1 protein_coding retained_intron MGP_CASTEiJ_T0003646.1 MGP_CASTEiJ_G0003288.1 mouse_genomes_project 17 45707657 45709409 + Runx2os1 antisense antisense MGP_CASTEiJ_T0045492.1 MGP_CASTEiJ_G0022429.1 mouse_genomes_project 17 15598193 15614503 - MGP_CASTEiJ_P0045492 Has1 protein_coding protein_coding MGP_CASTEiJ_T0048439.1 MGP_CASTEiJ_G0023274.1 mouse_genomes_project 17 85797504 85797910 + MGP_CASTEiJ_P0048439 protein_coding protein_coding MGP_CASTEiJ_T0003663.1 MGP_CASTEiJ_G0003301.1 mouse_genomes_project 17 73384153 73414532 + Gm28727 antisense antisense MGP_CASTEiJ_T0000948.1 MGP_CASTEiJ_G0000884.1 mouse_genomes_project 17 53381931 53386302 - TEC TEC MGP_CASTEiJ_T0012890.1 MGP_CASTEiJ_G0011053.1 mouse_genomes_project 17 56939498 56939875 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046994.1 MGP_CASTEiJ_G0022821.1 mouse_genomes_project 17 34705675 34721356 + MGP_CASTEiJ_P0046994 Zbtb12 protein_coding protein_coding MGP_CASTEiJ_T0046997.1 MGP_CASTEiJ_G0022821.1 mouse_genomes_project 17 34720469 34722776 + MGP_CASTEiJ_P0046997 Zbtb12 protein_coding protein_coding MGP_CASTEiJ_T0046351.1 MGP_CASTEiJ_G0022675.1 mouse_genomes_project 17 27888806 27934464 + MGP_CASTEiJ_P0046351 Brpf3 protein_coding protein_coding MGP_CASTEiJ_T0046352.1 MGP_CASTEiJ_G0022675.1 mouse_genomes_project 17 27889491 27894004 + Brpf3 protein_coding processed_transcript MGP_CASTEiJ_T0046353.1 MGP_CASTEiJ_G0022675.1 mouse_genomes_project 17 27899304 27910544 + Brpf3 protein_coding processed_transcript MGP_CASTEiJ_T0046354.1 MGP_CASTEiJ_G0022675.1 mouse_genomes_project 17 27900196 27934411 + Brpf3 protein_coding retained_intron MGP_CASTEiJ_T0046355.1 MGP_CASTEiJ_G0022675.1 mouse_genomes_project 17 27906095 27910930 + Brpf3 protein_coding retained_intron MGP_CASTEiJ_T0046356.1 MGP_CASTEiJ_G0022675.1 mouse_genomes_project 17 27906248 27911168 + Brpf3 protein_coding processed_transcript MGP_CASTEiJ_T0046357.1 MGP_CASTEiJ_G0022675.1 mouse_genomes_project 17 27917622 27932637 + Brpf3 protein_coding processed_transcript MGP_CASTEiJ_T0046358.1 MGP_CASTEiJ_G0022675.1 mouse_genomes_project 17 27918613 27932675 + Brpf3 protein_coding processed_transcript MGP_CASTEiJ_T0046359.1 MGP_CASTEiJ_G0022675.1 mouse_genomes_project 17 27918693 27934459 + Brpf3 protein_coding processed_transcript MGP_CASTEiJ_T0046360.1 MGP_CASTEiJ_G0022675.1 mouse_genomes_project 17 27923130 27932730 + Brpf3 protein_coding processed_transcript MGP_CASTEiJ_T0045282.1 MGP_CASTEiJ_G0022371.1 mouse_genomes_project 17 5346771 5619579 + MGP_CASTEiJ_P0045282 Fgfr1op protein_coding protein_coding MGP_CASTEiJ_T0045283.1 MGP_CASTEiJ_G0022371.1 mouse_genomes_project 17 5346790 5598528 + Fgfr1op protein_coding retained_intron MGP_CASTEiJ_T0045284.1 MGP_CASTEiJ_G0022371.1 mouse_genomes_project 17 5346810 5619250 + MGP_CASTEiJ_P0045284 Fgfr1op protein_coding protein_coding MGP_CASTEiJ_T0045290.1 MGP_CASTEiJ_G0022371.1 mouse_genomes_project 17 5604659 5617721 + MGP_CASTEiJ_P0045290 Fgfr1op protein_coding protein_coding MGP_CASTEiJ_T0100753.1 MGP_CASTEiJ_G0037666.1 mouse_genomes_project 17 10585117 10585255 + Gm26130 snoRNA snoRNA MGP_CASTEiJ_T0045907.1 MGP_CASTEiJ_G0022572.1 mouse_genomes_project 17 23926869 23930899 + MGP_CASTEiJ_P0045907 Tsr3 protein_coding protein_coding MGP_CASTEiJ_T0047148.1 MGP_CASTEiJ_G0022855.1 mouse_genomes_project 17 35098414 35103519 + Atp6v1g2 protein_coding retained_intron MGP_CASTEiJ_T0047149.1 MGP_CASTEiJ_G0022855.1 mouse_genomes_project 17 35099847 35102557 + MGP_CASTEiJ_P0047149 Atp6v1g2 protein_coding protein_coding MGP_CASTEiJ_T0047150.1 MGP_CASTEiJ_G0022855.1 mouse_genomes_project 17 35100636 35102656 + MGP_CASTEiJ_P0047150 Atp6v1g2 protein_coding protein_coding MGP_CASTEiJ_T0047151.1 MGP_CASTEiJ_G0022855.1 mouse_genomes_project 17 35100650 35102825 + Atp6v1g2 protein_coding retained_intron MGP_CASTEiJ_T0047152.1 MGP_CASTEiJ_G0022855.1 mouse_genomes_project 17 35101317 35103519 + MGP_CASTEiJ_P0047152 Atp6v1g2 protein_coding protein_coding MGP_CASTEiJ_T0047153.1 MGP_CASTEiJ_G0022855.1 mouse_genomes_project 17 35101411 35102719 + Atp6v1g2 protein_coding retained_intron MGP_CASTEiJ_T0046900.1 MGP_CASTEiJ_G0022805.1 mouse_genomes_project 17 34378801 34381871 + MGP_CASTEiJ_P0046900 Ager protein_coding protein_coding MGP_CASTEiJ_T0046901.1 MGP_CASTEiJ_G0022805.1 mouse_genomes_project 17 34378801 34381875 + MGP_CASTEiJ_P0046901 Ager protein_coding protein_coding MGP_CASTEiJ_T0046902.1 MGP_CASTEiJ_G0022805.1 mouse_genomes_project 17 34378814 34381846 + Ager protein_coding processed_transcript MGP_CASTEiJ_T0046903.1 MGP_CASTEiJ_G0022805.1 mouse_genomes_project 17 34378814 34381846 + Ager protein_coding retained_intron MGP_CASTEiJ_T0046904.1 MGP_CASTEiJ_G0022805.1 mouse_genomes_project 17 34378833 34381799 + Ager protein_coding retained_intron MGP_CASTEiJ_T0046905.1 MGP_CASTEiJ_G0022805.1 mouse_genomes_project 17 34378833 34381799 + Ager protein_coding retained_intron MGP_CASTEiJ_T0046906.1 MGP_CASTEiJ_G0022805.1 mouse_genomes_project 17 34378833 34381799 + Ager protein_coding retained_intron MGP_CASTEiJ_T0046907.1 MGP_CASTEiJ_G0022805.1 mouse_genomes_project 17 34378833 34381835 + Ager protein_coding retained_intron MGP_CASTEiJ_T0046908.1 MGP_CASTEiJ_G0022805.1 mouse_genomes_project 17 34378833 34381799 + Ager protein_coding retained_intron MGP_CASTEiJ_T0046909.1 MGP_CASTEiJ_G0022805.1 mouse_genomes_project 17 34378833 34381799 + Ager protein_coding retained_intron MGP_CASTEiJ_T0046910.1 MGP_CASTEiJ_G0022805.1 mouse_genomes_project 17 34378833 34381799 + Ager protein_coding retained_intron MGP_CASTEiJ_T0046911.1 MGP_CASTEiJ_G0022805.1 mouse_genomes_project 17 34378833 34381835 + MGP_CASTEiJ_P0046911 Ager protein_coding protein_coding MGP_CASTEiJ_T0046912.1 MGP_CASTEiJ_G0022805.1 mouse_genomes_project 17 34378833 34381835 + MGP_CASTEiJ_P0046912 Ager protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045613.1 MGP_CASTEiJ_G0022496.1 mouse_genomes_project 17 22218930 22220365 - MGP_CASTEiJ_P0045613 Cldn9 protein_coding protein_coding MGP_CASTEiJ_T0046091.1 MGP_CASTEiJ_G0022615.1 mouse_genomes_project 17 24873323 24877075 - MGP_CASTEiJ_P0046091 Nme4 protein_coding protein_coding MGP_CASTEiJ_T0046092.1 MGP_CASTEiJ_G0022615.1 mouse_genomes_project 17 24874985 24877040 - Nme4 protein_coding retained_intron MGP_CASTEiJ_T0011097.1 MGP_CASTEiJ_G0009285.1 mouse_genomes_project 17 44878188 44878474 - Gm24532 misc_RNA misc_RNA MGP_CASTEiJ_T0047854.1 MGP_CASTEiJ_G0023072.1 mouse_genomes_project 17 49585205 49599050 + MGP_CASTEiJ_P0047854 Trem3 protein_coding protein_coding MGP_CASTEiJ_T0048488.1 MGP_CASTEiJ_G0023292.1 mouse_genomes_project 17 89108863 89120375 + MGP_CASTEiJ_P0048488 Six3 protein_coding protein_coding MGP_CASTEiJ_T0048489.1 MGP_CASTEiJ_G0023292.1 mouse_genomes_project 17 89116032 89121343 + MGP_CASTEiJ_P0048489 Six3 protein_coding protein_coding MGP_CASTEiJ_T0048490.1 MGP_CASTEiJ_G0023292.1 mouse_genomes_project 17 89116233 89124411 + MGP_CASTEiJ_P0048490 Six3 protein_coding protein_coding MGP_CASTEiJ_T0046477.1 MGP_CASTEiJ_G0022704.1 mouse_genomes_project 17 30319525 30389740 + MGP_CASTEiJ_P0046477 Umodl1 protein_coding protein_coding MGP_CASTEiJ_T0046478.1 MGP_CASTEiJ_G0022704.1 mouse_genomes_project 17 30319525 30389740 + MGP_CASTEiJ_P0046478 Umodl1 protein_coding protein_coding MGP_CASTEiJ_T0046479.1 MGP_CASTEiJ_G0022704.1 mouse_genomes_project 17 30319529 30389740 + MGP_CASTEiJ_P0046479 Umodl1 protein_coding protein_coding MGP_CASTEiJ_T0045538.1 MGP_CASTEiJ_G0022466.1 mouse_genomes_project 17 19533785 19546754 + MGP_CASTEiJ_P0045538 Zfp54 protein_coding protein_coding MGP_CASTEiJ_T0045539.1 MGP_CASTEiJ_G0022466.1 mouse_genomes_project 17 19533791 19546268 + MGP_CASTEiJ_P0045539 Zfp54 protein_coding protein_coding MGP_CASTEiJ_T0045540.1 MGP_CASTEiJ_G0022466.1 mouse_genomes_project 17 19533816 19545059 + MGP_CASTEiJ_P0045540 Zfp54 protein_coding protein_coding MGP_CASTEiJ_T0046061.1 MGP_CASTEiJ_G0022608.1 mouse_genomes_project 17 24687920 24699705 - MGP_CASTEiJ_P0046061 Pigq protein_coding protein_coding MGP_CASTEiJ_T0046062.1 MGP_CASTEiJ_G0022608.1 mouse_genomes_project 17 24687921 24704428 - Pigq protein_coding retained_intron MGP_CASTEiJ_T0046063.1 MGP_CASTEiJ_G0022608.1 mouse_genomes_project 17 24687921 24704593 - MGP_CASTEiJ_P0046063 Pigq protein_coding protein_coding MGP_CASTEiJ_T0046064.1 MGP_CASTEiJ_G0022608.1 mouse_genomes_project 17 24687921 24704480 - MGP_CASTEiJ_P0046064 Pigq protein_coding protein_coding MGP_CASTEiJ_T0046065.1 MGP_CASTEiJ_G0022608.1 mouse_genomes_project 17 24688989 24697344 - MGP_CASTEiJ_P0046065 Pigq protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046066.1 MGP_CASTEiJ_G0022608.1 mouse_genomes_project 17 24689096 24693877 - Pigq protein_coding retained_intron MGP_CASTEiJ_T0046067.1 MGP_CASTEiJ_G0022608.1 mouse_genomes_project 17 24689138 24698604 - MGP_CASTEiJ_P0046067 Pigq protein_coding protein_coding MGP_CASTEiJ_T0046068.1 MGP_CASTEiJ_G0022608.1 mouse_genomes_project 17 24692532 24693617 - Pigq protein_coding retained_intron MGP_CASTEiJ_T0046069.1 MGP_CASTEiJ_G0022608.1 mouse_genomes_project 17 24696538 24704480 - Pigq protein_coding retained_intron MGP_CASTEiJ_T0046070.1 MGP_CASTEiJ_G0022608.1 mouse_genomes_project 17 24697621 24704478 - MGP_CASTEiJ_P0046070 Pigq protein_coding protein_coding MGP_CASTEiJ_T0046071.1 MGP_CASTEiJ_G0022608.1 mouse_genomes_project 17 24699017 24704474 - Pigq protein_coding retained_intron MGP_CASTEiJ_T0046072.1 MGP_CASTEiJ_G0022608.1 mouse_genomes_project 17 24699623 24705388 - MGP_CASTEiJ_P0046072 Pigq protein_coding protein_coding MGP_CASTEiJ_T0046073.1 MGP_CASTEiJ_G0022608.1 mouse_genomes_project 17 24699677 24700005 - MGP_CASTEiJ_P0046073 Pigq protein_coding protein_coding MGP_CASTEiJ_T0046074.1 MGP_CASTEiJ_G0022608.1 mouse_genomes_project 17 24699806 24705357 - MGP_CASTEiJ_P0046074 Pigq protein_coding protein_coding MGP_CASTEiJ_T0045430.1 MGP_CASTEiJ_G0022414.1 mouse_genomes_project 17 12642467 12657307 - MGP_CASTEiJ_P0045430 protein_coding protein_coding MGP_CASTEiJ_T0045431.1 MGP_CASTEiJ_G0022414.1 mouse_genomes_project 17 12642467 12657307 - MGP_CASTEiJ_P0045431 protein_coding protein_coding MGP_CASTEiJ_T0047442.1 MGP_CASTEiJ_G0022932.1 mouse_genomes_project 17 37993841 38003288 + MGP_CASTEiJ_P0047442 protein_coding protein_coding MGP_CASTEiJ_T0047954.1 MGP_CASTEiJ_G0023100.1 mouse_genomes_project 17 56018323 56045519 - MGP_CASTEiJ_P0047954 Slc5a7 protein_coding protein_coding MGP_CASTEiJ_T0099539.1 MGP_CASTEiJ_G0036452.1 mouse_genomes_project 17 52452522 52452640 - Gm25177 snRNA snRNA MGP_CASTEiJ_T0012837.1 MGP_CASTEiJ_G0011000.1 mouse_genomes_project 17 12617672 12618411 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046398.1 MGP_CASTEiJ_G0022684.1 mouse_genomes_project 17 28261985 28360527 - MGP_CASTEiJ_P0046398 Cpne5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0046399.1 MGP_CASTEiJ_G0022684.1 mouse_genomes_project 17 28274208 28360567 - MGP_CASTEiJ_P0046399 Cpne5 protein_coding protein_coding MGP_CASTEiJ_T0046400.1 MGP_CASTEiJ_G0022684.1 mouse_genomes_project 17 28275574 28301705 - Cpne5 protein_coding processed_transcript MGP_CASTEiJ_T0046401.1 MGP_CASTEiJ_G0022684.1 mouse_genomes_project 17 28286985 28294238 - Cpne5 protein_coding processed_transcript MGP_CASTEiJ_T0046402.1 MGP_CASTEiJ_G0022684.1 mouse_genomes_project 17 28305964 28360529 - MGP_CASTEiJ_P0046402 Cpne5 protein_coding protein_coding MGP_CASTEiJ_T0046403.1 MGP_CASTEiJ_G0022684.1 mouse_genomes_project 17 28338967 28360481 - Cpne5 protein_coding retained_intron MGP_CASTEiJ_T0045502.1 MGP_CASTEiJ_G0022437.1 mouse_genomes_project 17 15921002 16998176 + MGP_CASTEiJ_P0045502 protein_coding protein_coding MGP_CASTEiJ_T0048422.1 MGP_CASTEiJ_G0023265.1 mouse_genomes_project 17 83482076 83565317 + MGP_CASTEiJ_P0048422 Arhgef33 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048423.1 MGP_CASTEiJ_G0023265.1 mouse_genomes_project 17 83482214 83569677 + MGP_CASTEiJ_P0048423 Arhgef33 protein_coding protein_coding MGP_CASTEiJ_T0048424.1 MGP_CASTEiJ_G0023265.1 mouse_genomes_project 17 83523961 83562503 + MGP_CASTEiJ_P0048424 Arhgef33 protein_coding unknown_likely_coding MGP_CASTEiJ_T0098541.1 MGP_CASTEiJ_G0035472.1 mouse_genomes_project 17 49082404 49082523 + n-R5s28 rRNA rRNA MGP_CASTEiJ_T0048215.1 MGP_CASTEiJ_G0023200.1 mouse_genomes_project 17 71284589 71291698 + MGP_CASTEiJ_P0048215 Tmem200c protein_coding protein_coding MGP_CASTEiJ_T0006718.1 MGP_CASTEiJ_G0005547.1 mouse_genomes_project 17 9934499 9942726 + 4732491K20Rik lincRNA lincRNA MGP_CASTEiJ_T0003590.1 MGP_CASTEiJ_G0003250.1 mouse_genomes_project 17 8053848 8128087 + Gm16168 antisense antisense MGP_CASTEiJ_T0003591.1 MGP_CASTEiJ_G0003250.1 mouse_genomes_project 17 8053855 8111488 + Gm16168 antisense antisense MGP_CASTEiJ_T0045713.1 MGP_CASTEiJ_G0022524.1 mouse_genomes_project 17 23030401 23041468 + MGP_CASTEiJ_P0045713 Rnps1 protein_coding protein_coding MGP_CASTEiJ_T0045714.1 MGP_CASTEiJ_G0022524.1 mouse_genomes_project 17 23030401 23041468 + MGP_CASTEiJ_P0045714 Rnps1 protein_coding protein_coding MGP_CASTEiJ_T0045715.1 MGP_CASTEiJ_G0022524.1 mouse_genomes_project 17 23030401 23041468 + MGP_CASTEiJ_P0045715 Rnps1 protein_coding protein_coding MGP_CASTEiJ_T0009949.1 MGP_CASTEiJ_G0008137.1 mouse_genomes_project 17 73397122 73397220 - Mir1195 miRNA miRNA MGP_CASTEiJ_T0047606.1 MGP_CASTEiJ_G0023005.1 mouse_genomes_project 17 46721526 46735707 + MGP_CASTEiJ_P0047606 protein_coding protein_coding MGP_CASTEiJ_T0047607.1 MGP_CASTEiJ_G0023005.1 mouse_genomes_project 17 46721561 46734711 + protein_coding processed_transcript MGP_CASTEiJ_T0048023.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58381912 58385450 - MGP_CASTEiJ_P0048023 Safb2 protein_coding protein_coding MGP_CASTEiJ_T0048024.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58381920 58385501 - MGP_CASTEiJ_P0048024 Safb2 protein_coding protein_coding MGP_CASTEiJ_T0048025.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58383871 58405784 - MGP_CASTEiJ_P0048025 Safb2 protein_coding protein_coding MGP_CASTEiJ_T0048026.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58383871 58405711 - MGP_CASTEiJ_P0048026 Safb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048027.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58383871 58387950 - MGP_CASTEiJ_P0048027 Safb2 protein_coding protein_coding MGP_CASTEiJ_T0048028.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58383879 58405852 - MGP_CASTEiJ_P0048028 Safb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048029.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58383881 58393441 - Safb2 protein_coding processed_transcript MGP_CASTEiJ_T0048030.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58384237 58387953 - MGP_CASTEiJ_P0048030 Safb2 protein_coding protein_coding MGP_CASTEiJ_T0048031.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58386930 58392384 - MGP_CASTEiJ_P0048031 Safb2 protein_coding protein_coding MGP_CASTEiJ_T0048032.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58388467 58390367 - Safb2 protein_coding retained_intron MGP_CASTEiJ_T0048033.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58389827 58396047 - Safb2 protein_coding retained_intron MGP_CASTEiJ_T0048034.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58389923 58405723 - MGP_CASTEiJ_P0048034 Safb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048035.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58391026 58396469 - Safb2 protein_coding retained_intron MGP_CASTEiJ_T0048036.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58391971 58392623 - Safb2 protein_coding retained_intron MGP_CASTEiJ_T0048037.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58392213 58405761 - MGP_CASTEiJ_P0048037 Safb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048038.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58397484 58404243 - Safb2 protein_coding retained_intron MGP_CASTEiJ_T0048039.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58397613 58405500 - Safb2 protein_coding retained_intron MGP_CASTEiJ_T0048040.1 MGP_CASTEiJ_G0023133.1 mouse_genomes_project 17 58400031 58405710 - Safb2 protein_coding retained_intron MGP_CASTEiJ_T0003608.1 MGP_CASTEiJ_G0003261.1 mouse_genomes_project 17 25985789 25987574 - Itpr3os antisense antisense MGP_CASTEiJ_T0046302.1 MGP_CASTEiJ_G0022664.1 mouse_genomes_project 17 27373307 27391931 - MGP_CASTEiJ_P0046302 Tead3 protein_coding protein_coding MGP_CASTEiJ_T0046303.1 MGP_CASTEiJ_G0022664.1 mouse_genomes_project 17 27373311 27392202 - MGP_CASTEiJ_P0046303 Tead3 protein_coding protein_coding MGP_CASTEiJ_T0046304.1 MGP_CASTEiJ_G0022664.1 mouse_genomes_project 17 27373350 27392289 - MGP_CASTEiJ_P0046304 Tead3 protein_coding protein_coding MGP_CASTEiJ_T0046305.1 MGP_CASTEiJ_G0022664.1 mouse_genomes_project 17 27373354 27392265 - Tead3 protein_coding retained_intron MGP_CASTEiJ_T0046306.1 MGP_CASTEiJ_G0022664.1 mouse_genomes_project 17 27374358 27385051 - MGP_CASTEiJ_P0046306 Tead3 protein_coding protein_coding MGP_CASTEiJ_T0046307.1 MGP_CASTEiJ_G0022664.1 mouse_genomes_project 17 27375144 27377006 - Tead3 protein_coding retained_intron MGP_CASTEiJ_T0046308.1 MGP_CASTEiJ_G0022664.1 mouse_genomes_project 17 27375561 27377931 - Tead3 protein_coding processed_transcript MGP_CASTEiJ_T0046826.1 MGP_CASTEiJ_G0022786.1 mouse_genomes_project 17 33830862 33840208 + MGP_CASTEiJ_P0046826 protein_coding protein_coding MGP_CASTEiJ_T0046942.1 MGP_CASTEiJ_G0022811.1 mouse_genomes_project 17 34428585 34430146 + MGP_CASTEiJ_P0046942 Fkbpl protein_coding protein_coding MGP_CASTEiJ_T0046943.1 MGP_CASTEiJ_G0022811.1 mouse_genomes_project 17 34428662 34429144 + MGP_CASTEiJ_P0046943 Fkbpl protein_coding protein_coding MGP_CASTEiJ_T0045313.1 MGP_CASTEiJ_G0022380.1 mouse_genomes_project 17 5864955 5872461 + MGP_CASTEiJ_P0045313 T protein_coding unknown_likely_coding MGP_CASTEiJ_T0045314.1 MGP_CASTEiJ_G0022380.1 mouse_genomes_project 17 5864983 5872961 + MGP_CASTEiJ_P0045314 T protein_coding protein_coding MGP_CASTEiJ_T0045315.1 MGP_CASTEiJ_G0022380.1 mouse_genomes_project 17 5865485 5867548 + MGP_CASTEiJ_P0045315 T protein_coding protein_coding MGP_CASTEiJ_T0045316.1 MGP_CASTEiJ_G0022380.1 mouse_genomes_project 17 5865970 5872206 + MGP_CASTEiJ_P0045316 T protein_coding protein_coding MGP_CASTEiJ_T0046541.1 MGP_CASTEiJ_G0022720.1 mouse_genomes_project 17 31285887 31333057 - MGP_CASTEiJ_P0046541 Sik1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0046542.1 MGP_CASTEiJ_G0022720.1 mouse_genomes_project 17 31321723 31333743 - MGP_CASTEiJ_P0046542 Sik1 protein_coding protein_coding MGP_CASTEiJ_T0099547.1 MGP_CASTEiJ_G0036460.1 mouse_genomes_project 17 83179757 83179853 + Gm22215 snRNA snRNA MGP_CASTEiJ_T0045545.1 MGP_CASTEiJ_G0022471.1 mouse_genomes_project 17 19687175 19708726 + MGP_CASTEiJ_P0045545 Zfp948 protein_coding protein_coding MGP_CASTEiJ_T0047089.1 MGP_CASTEiJ_G0022840.1 mouse_genomes_project 17 34953797 34957676 + MGP_CASTEiJ_P0047089 Ly6g5c protein_coding protein_coding MGP_CASTEiJ_T0047063.1 MGP_CASTEiJ_G0022833.1 mouse_genomes_project 17 34893887 34902547 + MGP_CASTEiJ_P0047063 Clic1 protein_coding protein_coding MGP_CASTEiJ_T0047064.1 MGP_CASTEiJ_G0022833.1 mouse_genomes_project 17 34896292 34899557 + Clic1 protein_coding retained_intron MGP_CASTEiJ_T0012893.1 MGP_CASTEiJ_G0011056.1 mouse_genomes_project 17 65873879 65875736 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011094.1 MGP_CASTEiJ_G0009282.1 mouse_genomes_project 17 36343852 36344166 - Gm22453 misc_RNA misc_RNA MGP_CASTEiJ_T0045419.1 MGP_CASTEiJ_G0022411.1 mouse_genomes_project 17 12619908 12622661 + MGP_CASTEiJ_P0045419 1600012H06Rik protein_coding protein_coding MGP_CASTEiJ_T0045420.1 MGP_CASTEiJ_G0022411.1 mouse_genomes_project 17 12619954 12622659 + MGP_CASTEiJ_P0045420 1600012H06Rik protein_coding protein_coding MGP_CASTEiJ_T0045421.1 MGP_CASTEiJ_G0022411.1 mouse_genomes_project 17 12619993 12621711 + MGP_CASTEiJ_P0045421 1600012H06Rik protein_coding protein_coding MGP_CASTEiJ_T0045422.1 MGP_CASTEiJ_G0022411.1 mouse_genomes_project 17 12619995 12636269 + 1600012H06Rik protein_coding processed_transcript MGP_CASTEiJ_T0047963.1 MGP_CASTEiJ_G0023106.1 mouse_genomes_project 17 57625068 57638987 - MGP_CASTEiJ_P0047963 Zfp119a protein_coding protein_coding MGP_CASTEiJ_T0045814.1 MGP_CASTEiJ_G0022553.1 mouse_genomes_project 17 23549333 23552573 + MGP_CASTEiJ_P0045814 Igfals protein_coding protein_coding MGP_CASTEiJ_T0102163.1 MGP_CASTEiJ_G0038888.1 mouse_genomes_project 17 36689553 36691310 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0003633.1 MGP_CASTEiJ_G0003278.1 mouse_genomes_project 17 34968391 34973007 - Gm20522 antisense antisense MGP_CASTEiJ_T0009931.1 MGP_CASTEiJ_G0008119.1 mouse_genomes_project 17 34681759 34681823 - Mir6972 miRNA miRNA MGP_CASTEiJ_T0047468.1 MGP_CASTEiJ_G0022953.1 mouse_genomes_project 17 38769487 38780387 - MGP_CASTEiJ_P0047468 Esp36 protein_coding protein_coding MGP_CASTEiJ_T0046559.1 MGP_CASTEiJ_G0022724.1 mouse_genomes_project 17 31668550 31674178 - MGP_CASTEiJ_P0046559 Ephx3 protein_coding protein_coding MGP_CASTEiJ_T0046560.1 MGP_CASTEiJ_G0022724.1 mouse_genomes_project 17 31669400 31674264 - MGP_CASTEiJ_P0046560 Ephx3 protein_coding protein_coding MGP_CASTEiJ_T0047416.1 MGP_CASTEiJ_G0022909.1 mouse_genomes_project 17 37368902 37372562 - MGP_CASTEiJ_P0047416 Olfr91 protein_coding protein_coding MGP_CASTEiJ_T0046621.1 MGP_CASTEiJ_G0022740.1 mouse_genomes_project 17 32493049 32499583 - MGP_CASTEiJ_P0046621 Zfp870 protein_coding protein_coding MGP_CASTEiJ_T0009948.1 MGP_CASTEiJ_G0008136.1 mouse_genomes_project 17 66655714 66655805 + Mir6420 miRNA miRNA MGP_CASTEiJ_T0047838.1 MGP_CASTEiJ_G0023066.1 mouse_genomes_project 17 49110608 49172842 - MGP_CASTEiJ_P0047838 Foxp4 protein_coding protein_coding MGP_CASTEiJ_T0047839.1 MGP_CASTEiJ_G0023066.1 mouse_genomes_project 17 49111240 49172597 - MGP_CASTEiJ_P0047839 Foxp4 protein_coding protein_coding MGP_CASTEiJ_T0047840.1 MGP_CASTEiJ_G0023066.1 mouse_genomes_project 17 49111240 49172632 - MGP_CASTEiJ_P0047840 Foxp4 protein_coding protein_coding MGP_CASTEiJ_T0047841.1 MGP_CASTEiJ_G0023066.1 mouse_genomes_project 17 49111244 49172673 - MGP_CASTEiJ_P0047841 Foxp4 protein_coding protein_coding MGP_CASTEiJ_T0047842.1 MGP_CASTEiJ_G0023066.1 mouse_genomes_project 17 49121688 49131886 - Foxp4 protein_coding processed_transcript MGP_CASTEiJ_T0047843.1 MGP_CASTEiJ_G0023066.1 mouse_genomes_project 17 49121883 49122357 - Foxp4 protein_coding retained_intron MGP_CASTEiJ_T0047844.1 MGP_CASTEiJ_G0023066.1 mouse_genomes_project 17 49123739 49131592 - Foxp4 protein_coding retained_intron MGP_CASTEiJ_T0047845.1 MGP_CASTEiJ_G0023066.1 mouse_genomes_project 17 49131335 49172623 - Foxp4 protein_coding retained_intron MGP_CASTEiJ_T0045985.1 MGP_CASTEiJ_G0022592.1 mouse_genomes_project 17 24524347 24530043 - MGP_CASTEiJ_P0045985 Haghl protein_coding protein_coding MGP_CASTEiJ_T0045986.1 MGP_CASTEiJ_G0022592.1 mouse_genomes_project 17 24527294 24529838 - Haghl protein_coding retained_intron MGP_CASTEiJ_T0045987.1 MGP_CASTEiJ_G0022592.1 mouse_genomes_project 17 24527306 24530035 - Haghl protein_coding retained_intron MGP_CASTEiJ_T0045988.1 MGP_CASTEiJ_G0022592.1 mouse_genomes_project 17 24527318 24530076 - MGP_CASTEiJ_P0045988 Haghl protein_coding protein_coding MGP_CASTEiJ_T0045989.1 MGP_CASTEiJ_G0022592.1 mouse_genomes_project 17 24528044 24530070 - Haghl protein_coding retained_intron MGP_CASTEiJ_T0045990.1 MGP_CASTEiJ_G0022592.1 mouse_genomes_project 17 24528331 24530069 - Haghl protein_coding retained_intron MGP_CASTEiJ_T0045991.1 MGP_CASTEiJ_G0022592.1 mouse_genomes_project 17 24528635 24529808 - Haghl protein_coding retained_intron MGP_CASTEiJ_T0045992.1 MGP_CASTEiJ_G0022592.1 mouse_genomes_project 17 24528818 24530046 - MGP_CASTEiJ_P0045992 Haghl protein_coding protein_coding MGP_CASTEiJ_T0009928.1 MGP_CASTEiJ_G0008116.1 mouse_genomes_project 17 34586805 34586872 - Gm27471 miRNA miRNA MGP_CASTEiJ_T0003609.1 MGP_CASTEiJ_G0003262.1 mouse_genomes_project 17 26598324 26599843 + Gm15420 antisense antisense MGP_CASTEiJ_T0003616.1 MGP_CASTEiJ_G0003268.1 mouse_genomes_project 17 28733781 28750808 - Tbc1d22bos antisense antisense MGP_CASTEiJ_T0003617.1 MGP_CASTEiJ_G0003268.1 mouse_genomes_project 17 28742298 28750782 - Tbc1d22bos antisense antisense MGP_CASTEiJ_T0012855.1 MGP_CASTEiJ_G0011018.1 mouse_genomes_project 17 36330236 36330276 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048528.1 MGP_CASTEiJ_G0023306.1 mouse_genomes_project 17 91031290 91078038 - MGP_CASTEiJ_P0048528 1700011E24Rik protein_coding protein_coding MGP_CASTEiJ_T0048529.1 MGP_CASTEiJ_G0023306.1 mouse_genomes_project 17 91031295 91077984 - MGP_CASTEiJ_P0048529 1700011E24Rik protein_coding protein_coding MGP_CASTEiJ_T0048530.1 MGP_CASTEiJ_G0023306.1 mouse_genomes_project 17 91056568 91078005 - MGP_CASTEiJ_P0048530 1700011E24Rik protein_coding protein_coding MGP_CASTEiJ_T0048531.1 MGP_CASTEiJ_G0023306.1 mouse_genomes_project 17 91065080 91077932 - 1700011E24Rik protein_coding processed_transcript MGP_CASTEiJ_T0048532.1 MGP_CASTEiJ_G0023306.1 mouse_genomes_project 17 91065090 91077932 - 1700011E24Rik protein_coding processed_transcript MGP_CASTEiJ_T0045509.1 MGP_CASTEiJ_G0022444.1 mouse_genomes_project 17 18045723 18046680 - MGP_CASTEiJ_P0045509 protein_coding protein_coding MGP_CASTEiJ_T0046639.1 MGP_CASTEiJ_G0022747.1 mouse_genomes_project 17 32706629 32723474 + MGP_CASTEiJ_P0046639 Zfp563 protein_coding protein_coding MGP_CASTEiJ_T0046640.1 MGP_CASTEiJ_G0022747.1 mouse_genomes_project 17 32706883 32721995 + MGP_CASTEiJ_P0046640 Zfp563 protein_coding protein_coding MGP_CASTEiJ_T0046641.1 MGP_CASTEiJ_G0022747.1 mouse_genomes_project 17 32709751 32722329 + MGP_CASTEiJ_P0046641 Zfp563 protein_coding protein_coding MGP_CASTEiJ_T0047179.1 MGP_CASTEiJ_G0022862.1 mouse_genomes_project 17 35620551 35622054 + MGP_CASTEiJ_P0047179 2300002M23Rik protein_coding protein_coding MGP_CASTEiJ_T0047180.1 MGP_CASTEiJ_G0022862.1 mouse_genomes_project 17 35620586 35622032 + 2300002M23Rik protein_coding retained_intron MGP_CASTEiJ_T0046654.1 MGP_CASTEiJ_G0022756.1 mouse_genomes_project 17 33031556 33032929 + MGP_CASTEiJ_P0046654 Actl9 protein_coding protein_coding MGP_CASTEiJ_T0102171.1 MGP_CASTEiJ_G0038896.1 mouse_genomes_project 17 36908405 36908733 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0046600.1 MGP_CASTEiJ_G0022733.1 mouse_genomes_project 17 32058572 32122607 + MGP_CASTEiJ_P0046600 Cyp4f16 protein_coding protein_coding MGP_CASTEiJ_T0046601.1 MGP_CASTEiJ_G0022733.1 mouse_genomes_project 17 32058572 32122608 + MGP_CASTEiJ_P0046601 Cyp4f16 protein_coding protein_coding MGP_CASTEiJ_T0046602.1 MGP_CASTEiJ_G0022733.1 mouse_genomes_project 17 32072774 32074208 + Cyp4f16 protein_coding retained_intron MGP_CASTEiJ_T0046603.1 MGP_CASTEiJ_G0022733.1 mouse_genomes_project 17 32072879 32122608 + MGP_CASTEiJ_P0046603 Cyp4f16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046604.1 MGP_CASTEiJ_G0022733.1 mouse_genomes_project 17 32073095 32121461 + Cyp4f16 protein_coding retained_intron MGP_CASTEiJ_T0046605.1 MGP_CASTEiJ_G0022733.1 mouse_genomes_project 17 32078013 32122086 + Cyp4f16 protein_coding retained_intron MGP_CASTEiJ_T0047452.1 MGP_CASTEiJ_G0022942.1 mouse_genomes_project 17 38290009 38297992 - MGP_CASTEiJ_P0047452 protein_coding protein_coding MGP_CASTEiJ_T0047983.1 MGP_CASTEiJ_G0023117.1 mouse_genomes_project 17 57850408 57858380 - MGP_CASTEiJ_P0047983 Ubxn6 protein_coding protein_coding MGP_CASTEiJ_T0047984.1 MGP_CASTEiJ_G0023117.1 mouse_genomes_project 17 57851613 57858369 - Ubxn6 protein_coding retained_intron MGP_CASTEiJ_T0047985.1 MGP_CASTEiJ_G0023117.1 mouse_genomes_project 17 57851613 57855583 - Ubxn6 protein_coding retained_intron MGP_CASTEiJ_T0047986.1 MGP_CASTEiJ_G0023117.1 mouse_genomes_project 17 57851899 57852798 - Ubxn6 protein_coding retained_intron MGP_CASTEiJ_T0047987.1 MGP_CASTEiJ_G0023117.1 mouse_genomes_project 17 57853001 57855791 - Ubxn6 protein_coding processed_transcript MGP_CASTEiJ_T0047988.1 MGP_CASTEiJ_G0023117.1 mouse_genomes_project 17 57853481 57858200 - Ubxn6 protein_coding retained_intron MGP_CASTEiJ_T0047989.1 MGP_CASTEiJ_G0023117.1 mouse_genomes_project 17 57853993 57857900 - MGP_CASTEiJ_P0047989 Ubxn6 protein_coding protein_coding MGP_CASTEiJ_T0047344.1 MGP_CASTEiJ_G0022889.1 mouse_genomes_project 17 36615266 36616151 - MGP_CASTEiJ_P0047344 protein_coding protein_coding MGP_CASTEiJ_T0045366.1 MGP_CASTEiJ_G0022396.1 mouse_genomes_project 17 10537950 10539775 + MGP_CASTEiJ_P0045366 Mrgprh protein_coding protein_coding MGP_CASTEiJ_T0048167.1 MGP_CASTEiJ_G0023187.1 mouse_genomes_project 17 68194776 68230634 - MGP_CASTEiJ_P0048167 Twsg1 protein_coding protein_coding MGP_CASTEiJ_T0012833.1 MGP_CASTEiJ_G0010996.1 mouse_genomes_project 17 10475838 10476583 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012829.1 MGP_CASTEiJ_G0010992.1 mouse_genomes_project 17 6827182 6828169 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016803.1 MGP_CASTEiJ_G0014653.1 mouse_genomes_project 17 22803442 22816083 + BC028777 processed_transcript processed_transcript MGP_CASTEiJ_T0016804.1 MGP_CASTEiJ_G0014653.1 mouse_genomes_project 17 22807095 22816268 + BC028777 processed_transcript processed_transcript MGP_CASTEiJ_T0045415.1 MGP_CASTEiJ_G0022408.1 mouse_genomes_project 17 11930488 12060887 + MGP_CASTEiJ_P0045415 Smoc2 protein_coding protein_coding MGP_CASTEiJ_T0102135.1 MGP_CASTEiJ_G0038860.1 mouse_genomes_project 17 21666895 21667546 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045472.1 MGP_CASTEiJ_G0022424.1 mouse_genomes_project 17 15048880 15050672 + MGP_CASTEiJ_P0045472 protein_coding protein_coding MGP_CASTEiJ_T0047424.1 MGP_CASTEiJ_G0022917.1 mouse_genomes_project 17 37526789 37570662 - MGP_CASTEiJ_P0047424 Olfr98 protein_coding protein_coding MGP_CASTEiJ_T0047657.1 MGP_CASTEiJ_G0023015.1 mouse_genomes_project 17 47348118 47352576 + MGP_CASTEiJ_P0047657 Yipf3 protein_coding protein_coding MGP_CASTEiJ_T0047658.1 MGP_CASTEiJ_G0023015.1 mouse_genomes_project 17 47348163 47351527 + MGP_CASTEiJ_P0047658 Yipf3 protein_coding protein_coding MGP_CASTEiJ_T0047659.1 MGP_CASTEiJ_G0023015.1 mouse_genomes_project 17 47348183 47352040 + Yipf3 protein_coding retained_intron MGP_CASTEiJ_T0047660.1 MGP_CASTEiJ_G0023015.1 mouse_genomes_project 17 47348254 47351834 + MGP_CASTEiJ_P0047660 Yipf3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047661.1 MGP_CASTEiJ_G0023015.1 mouse_genomes_project 17 47349067 47351943 + MGP_CASTEiJ_P0047661 Yipf3 protein_coding protein_coding MGP_CASTEiJ_T0047662.1 MGP_CASTEiJ_G0023015.1 mouse_genomes_project 17 47350127 47351032 + Yipf3 protein_coding processed_transcript MGP_CASTEiJ_T0047663.1 MGP_CASTEiJ_G0023015.1 mouse_genomes_project 17 47351379 47352056 + Yipf3 protein_coding processed_transcript MGP_CASTEiJ_T0045330.1 MGP_CASTEiJ_G0022384.1 mouse_genomes_project 17 7173783 7176986 - MGP_CASTEiJ_P0045330 Pabpc6 protein_coding protein_coding MGP_CASTEiJ_T0003638.1 MGP_CASTEiJ_G0003283.1 mouse_genomes_project 17 35987366 36003806 + Gm16279 antisense antisense MGP_CASTEiJ_T0046812.1 MGP_CASTEiJ_G0022783.1 mouse_genomes_project 17 33776849 33787134 - MGP_CASTEiJ_P0046812 Brd2 protein_coding protein_coding MGP_CASTEiJ_T0046813.1 MGP_CASTEiJ_G0022783.1 mouse_genomes_project 17 33776856 33785228 - MGP_CASTEiJ_P0046813 Brd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046814.1 MGP_CASTEiJ_G0022783.1 mouse_genomes_project 17 33777510 33778559 - Brd2 protein_coding retained_intron MGP_CASTEiJ_T0046815.1 MGP_CASTEiJ_G0022783.1 mouse_genomes_project 17 33778585 33779778 - Brd2 protein_coding retained_intron MGP_CASTEiJ_T0046816.1 MGP_CASTEiJ_G0022783.1 mouse_genomes_project 17 33778587 33779804 - MGP_CASTEiJ_P0046816 Brd2 protein_coding protein_coding MGP_CASTEiJ_T0046817.1 MGP_CASTEiJ_G0022783.1 mouse_genomes_project 17 33778622 33779903 - MGP_CASTEiJ_P0046817 Brd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046818.1 MGP_CASTEiJ_G0022783.1 mouse_genomes_project 17 33778911 33786804 - MGP_CASTEiJ_P0046818 Brd2 protein_coding protein_coding MGP_CASTEiJ_T0046819.1 MGP_CASTEiJ_G0022783.1 mouse_genomes_project 17 33779590 33780297 - Brd2 protein_coding retained_intron MGP_CASTEiJ_T0046820.1 MGP_CASTEiJ_G0022783.1 mouse_genomes_project 17 33784344 33786766 - Brd2 protein_coding processed_transcript MGP_CASTEiJ_T0046821.1 MGP_CASTEiJ_G0022783.1 mouse_genomes_project 17 33784374 33787435 - Brd2 protein_coding processed_transcript MGP_CASTEiJ_T0046822.1 MGP_CASTEiJ_G0022783.1 mouse_genomes_project 17 33784683 33787450 - Brd2 protein_coding processed_transcript MGP_CASTEiJ_T0047448.1 MGP_CASTEiJ_G0022938.1 mouse_genomes_project 17 38160524 38161642 + MGP_CASTEiJ_P0047448 Olfr125 protein_coding protein_coding MGP_CASTEiJ_T0047771.1 MGP_CASTEiJ_G0023053.1 mouse_genomes_project 17 48690410 48803871 + MGP_CASTEiJ_P0047771 Ccnd3 protein_coding protein_coding MGP_CASTEiJ_T0047772.1 MGP_CASTEiJ_G0023053.1 mouse_genomes_project 17 48690438 48803266 + MGP_CASTEiJ_P0047772 Ccnd3 protein_coding protein_coding MGP_CASTEiJ_T0047773.1 MGP_CASTEiJ_G0023053.1 mouse_genomes_project 17 48690515 48804423 + MGP_CASTEiJ_P0047773 Ccnd3 protein_coding protein_coding MGP_CASTEiJ_T0047774.1 MGP_CASTEiJ_G0023053.1 mouse_genomes_project 17 48690521 48783364 + Ccnd3 protein_coding retained_intron MGP_CASTEiJ_T0047775.1 MGP_CASTEiJ_G0023053.1 mouse_genomes_project 17 48690578 48783765 + Ccnd3 protein_coding retained_intron MGP_CASTEiJ_T0047776.1 MGP_CASTEiJ_G0023053.1 mouse_genomes_project 17 48690590 48799183 + MGP_CASTEiJ_P0047776 Ccnd3 protein_coding protein_coding MGP_CASTEiJ_T0047777.1 MGP_CASTEiJ_G0023053.1 mouse_genomes_project 17 48690599 48783536 + Ccnd3 protein_coding retained_intron MGP_CASTEiJ_T0047778.1 MGP_CASTEiJ_G0023053.1 mouse_genomes_project 17 48690600 48693267 + Ccnd3 protein_coding retained_intron MGP_CASTEiJ_T0047779.1 MGP_CASTEiJ_G0023053.1 mouse_genomes_project 17 48690600 48804445 + MGP_CASTEiJ_P0047779 Ccnd3 protein_coding protein_coding MGP_CASTEiJ_T0047781.1 MGP_CASTEiJ_G0023053.1 mouse_genomes_project 17 48798834 48803975 + Ccnd3 protein_coding retained_intron MGP_CASTEiJ_T0047782.1 MGP_CASTEiJ_G0023053.1 mouse_genomes_project 17 48798927 48803380 + MGP_CASTEiJ_P0047782 Ccnd3 protein_coding protein_coding MGP_CASTEiJ_T0047783.1 MGP_CASTEiJ_G0023053.1 mouse_genomes_project 17 48799053 48804572 + MGP_CASTEiJ_P0047783 Ccnd3 protein_coding protein_coding MGP_CASTEiJ_T0047784.1 MGP_CASTEiJ_G0023053.1 mouse_genomes_project 17 48799711 48803296 + MGP_CASTEiJ_P0047784 Ccnd3 protein_coding protein_coding MGP_CASTEiJ_T0047785.1 MGP_CASTEiJ_G0023053.1 mouse_genomes_project 17 48800154 48804659 + MGP_CASTEiJ_P0047785 Ccnd3 protein_coding protein_coding MGP_CASTEiJ_T0048003.1 MGP_CASTEiJ_G0023126.1 mouse_genomes_project 17 58065765 58075122 - MGP_CASTEiJ_P0048003 Ticam1 protein_coding protein_coding MGP_CASTEiJ_T0045311.1 MGP_CASTEiJ_G0022379.1 mouse_genomes_project 17 5767151 5770880 + MGP_CASTEiJ_P0045311 Prr18 protein_coding protein_coding MGP_CASTEiJ_T0045312.1 MGP_CASTEiJ_G0022379.1 mouse_genomes_project 17 5767484 5770880 + MGP_CASTEiJ_P0045312 Prr18 protein_coding protein_coding MGP_CASTEiJ_T0003661.1 MGP_CASTEiJ_G0003299.1 mouse_genomes_project 17 71757051 71758894 - 2410021H03Rik antisense antisense MGP_CASTEiJ_T0045815.1 MGP_CASTEiJ_G0022554.1 mouse_genomes_project 17 23553194 23556945 - MGP_CASTEiJ_P0045815 Nubp2 protein_coding protein_coding MGP_CASTEiJ_T0047595.1 MGP_CASTEiJ_G0023003.1 mouse_genomes_project 17 46667801 46692970 - MGP_CASTEiJ_P0047595 Capn11 protein_coding protein_coding MGP_CASTEiJ_T0047596.1 MGP_CASTEiJ_G0023003.1 mouse_genomes_project 17 46680113 46692942 - MGP_CASTEiJ_P0047596 Capn11 protein_coding non_stop_decay MGP_CASTEiJ_T0102188.1 MGP_CASTEiJ_G0038913.1 mouse_genomes_project 17 57611405 57612053 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0047850.1 MGP_CASTEiJ_G0023070.1 mouse_genomes_project 17 49474549 49489982 - MGP_CASTEiJ_P0047850 protein_coding protein_coding MGP_CASTEiJ_T0045583.1 MGP_CASTEiJ_G0022488.1 mouse_genomes_project 17 22095121 22110929 - MGP_CASTEiJ_P0045583 Zfp13 protein_coding protein_coding MGP_CASTEiJ_T0045584.1 MGP_CASTEiJ_G0022488.1 mouse_genomes_project 17 22095128 22124911 - MGP_CASTEiJ_P0045584 Zfp13 protein_coding protein_coding MGP_CASTEiJ_T0046254.1 MGP_CASTEiJ_G0022657.1 mouse_genomes_project 17 27074783 27088439 - MGP_CASTEiJ_P0046254 Tcp11 protein_coding protein_coding MGP_CASTEiJ_T0046255.1 MGP_CASTEiJ_G0022657.1 mouse_genomes_project 17 27074784 27088494 - MGP_CASTEiJ_P0046255 Tcp11 protein_coding protein_coding MGP_CASTEiJ_T0046256.1 MGP_CASTEiJ_G0022657.1 mouse_genomes_project 17 27074787 27088422 - MGP_CASTEiJ_P0046256 Tcp11 protein_coding protein_coding MGP_CASTEiJ_T0046257.1 MGP_CASTEiJ_G0022657.1 mouse_genomes_project 17 27074833 27076513 - Tcp11 protein_coding processed_transcript MGP_CASTEiJ_T0046258.1 MGP_CASTEiJ_G0022657.1 mouse_genomes_project 17 27077672 27088494 - MGP_CASTEiJ_P0046258 Tcp11 protein_coding protein_coding MGP_CASTEiJ_T0046259.1 MGP_CASTEiJ_G0022657.1 mouse_genomes_project 17 27082713 27088456 - MGP_CASTEiJ_P0046259 Tcp11 protein_coding protein_coding MGP_CASTEiJ_T0046539.1 MGP_CASTEiJ_G0022719.1 mouse_genomes_project 17 31135554 31139337 + MGP_CASTEiJ_P0046539 Cryaa protein_coding protein_coding MGP_CASTEiJ_T0046540.1 MGP_CASTEiJ_G0022719.1 mouse_genomes_project 17 31135557 31153001 + MGP_CASTEiJ_P0046540 Cryaa protein_coding unknown_likely_coding MGP_CASTEiJ_T0045716.1 MGP_CASTEiJ_G0022525.1 mouse_genomes_project 17 23042249 23056008 + MGP_CASTEiJ_P0045716 Eci1 protein_coding protein_coding MGP_CASTEiJ_T0047437.1 MGP_CASTEiJ_G0022928.1 mouse_genomes_project 17 37863834 37926349 - MGP_CASTEiJ_P0047437 protein_coding protein_coding MGP_CASTEiJ_T0102156.1 MGP_CASTEiJ_G0038881.1 mouse_genomes_project 17 36304359 36306952 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102129.1 MGP_CASTEiJ_G0038854.1 mouse_genomes_project 17 19390022 19390205 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0046455.1 MGP_CASTEiJ_G0022697.1 mouse_genomes_project 17 28850869 28878487 - MGP_CASTEiJ_P0046455 Ccdc167 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046456.1 MGP_CASTEiJ_G0022697.1 mouse_genomes_project 17 28859029 28878463 - MGP_CASTEiJ_P0046456 Ccdc167 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046457.1 MGP_CASTEiJ_G0022697.1 mouse_genomes_project 17 28859775 28878487 - MGP_CASTEiJ_P0046457 Ccdc167 protein_coding protein_coding MGP_CASTEiJ_T0046458.1 MGP_CASTEiJ_G0022697.1 mouse_genomes_project 17 28861454 28878441 - MGP_CASTEiJ_P0046458 Ccdc167 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046459.1 MGP_CASTEiJ_G0022697.1 mouse_genomes_project 17 28864784 28878490 - MGP_CASTEiJ_P0046459 Ccdc167 protein_coding protein_coding MGP_CASTEiJ_T0046460.1 MGP_CASTEiJ_G0022697.1 mouse_genomes_project 17 28874487 28878442 - Ccdc167 protein_coding processed_transcript MGP_CASTEiJ_T0047469.1 MGP_CASTEiJ_G0022954.1 mouse_genomes_project 17 39147090 39153101 + MGP_CASTEiJ_P0047469 Esp31 protein_coding protein_coding MGP_CASTEiJ_T0047725.1 MGP_CASTEiJ_G0023035.1 mouse_genomes_project 17 47792576 47794330 + MGP_CASTEiJ_P0047725 Mea1 protein_coding protein_coding MGP_CASTEiJ_T0047145.1 MGP_CASTEiJ_G0022853.1 mouse_genomes_project 17 35082745 35100551 - MGP_CASTEiJ_P0047145 Nfkbil1 protein_coding protein_coding MGP_CASTEiJ_T0047147.1 MGP_CASTEiJ_G0022853.1 mouse_genomes_project 17 35083405 35084227 - Nfkbil1 protein_coding processed_transcript MGP_CASTEiJ_T0009954.1 MGP_CASTEiJ_G0008142.1 mouse_genomes_project 17 95007945 95008006 + Gm27475 miRNA miRNA MGP_CASTEiJ_T0046823.1 MGP_CASTEiJ_G0022784.1 mouse_genomes_project 17 33800001 33803921 + MGP_CASTEiJ_P0046823 H2-DMa protein_coding protein_coding MGP_CASTEiJ_T0046824.1 MGP_CASTEiJ_G0022784.1 mouse_genomes_project 17 33801846 33803000 + H2-DMa protein_coding retained_intron MGP_CASTEiJ_T0046543.1 MGP_CASTEiJ_G0022721.1 mouse_genomes_project 17 31431998 31508119 - MGP_CASTEiJ_P0046543 Hsf2bp protein_coding protein_coding MGP_CASTEiJ_T0046544.1 MGP_CASTEiJ_G0022721.1 mouse_genomes_project 17 31433523 31487238 - MGP_CASTEiJ_P0046544 Hsf2bp protein_coding protein_coding MGP_CASTEiJ_T0046545.1 MGP_CASTEiJ_G0022721.1 mouse_genomes_project 17 31485116 31496818 - Hsf2bp protein_coding processed_transcript MGP_CASTEiJ_T0047647.1 MGP_CASTEiJ_G0023012.1 mouse_genomes_project 17 47269918 47302728 - MGP_CASTEiJ_P0047647 Polh protein_coding protein_coding MGP_CASTEiJ_T0046329.1 MGP_CASTEiJ_G0022668.1 mouse_genomes_project 17 27609126 27612107 + MGP_CASTEiJ_P0046329 Clpsl2 protein_coding protein_coding MGP_CASTEiJ_T0012868.1 MGP_CASTEiJ_G0011031.1 mouse_genomes_project 17 38276434 38278400 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048329.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77334236 77523995 + MGP_CASTEiJ_P0048329 Birc6 protein_coding protein_coding MGP_CASTEiJ_T0048330.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77334401 77509860 + MGP_CASTEiJ_P0048330 Birc6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048331.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77334409 77523029 + MGP_CASTEiJ_P0048331 Birc6 protein_coding protein_coding MGP_CASTEiJ_T0048332.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77334409 77523029 + MGP_CASTEiJ_P0048332 Birc6 protein_coding protein_coding MGP_CASTEiJ_T0048333.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77334409 77523029 + MGP_CASTEiJ_P0048333 Birc6 protein_coding protein_coding MGP_CASTEiJ_T0048334.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77334463 77379464 + Birc6 protein_coding retained_intron MGP_CASTEiJ_T0048335.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77334493 77523029 + MGP_CASTEiJ_P0048335 Birc6 protein_coding protein_coding MGP_CASTEiJ_T0048336.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77355710 77359898 + Birc6 protein_coding retained_intron MGP_CASTEiJ_T0048337.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77367021 77371689 + Birc6 protein_coding retained_intron MGP_CASTEiJ_T0048338.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77367034 77373407 + Birc6 protein_coding retained_intron MGP_CASTEiJ_T0048339.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77371317 77373554 + Birc6 protein_coding retained_intron MGP_CASTEiJ_T0048340.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77371645 77378408 + Birc6 protein_coding retained_intron MGP_CASTEiJ_T0048341.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77412739 77436736 + MGP_CASTEiJ_P0048341 Birc6 protein_coding protein_coding MGP_CASTEiJ_T0048342.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77418874 77422090 + MGP_CASTEiJ_P0048342 Birc6 protein_coding protein_coding MGP_CASTEiJ_T0048343.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77426986 77436735 + MGP_CASTEiJ_P0048343 Birc6 protein_coding protein_coding MGP_CASTEiJ_T0048344.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77427355 77458524 + Birc6 protein_coding retained_intron MGP_CASTEiJ_T0048345.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77427385 77435535 + MGP_CASTEiJ_P0048345 Birc6 protein_coding protein_coding MGP_CASTEiJ_T0048346.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77428170 77431693 + Birc6 protein_coding retained_intron MGP_CASTEiJ_T0048347.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77435166 77436735 + Birc6 protein_coding retained_intron MGP_CASTEiJ_T0048348.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77471509 77479062 + MGP_CASTEiJ_P0048348 Birc6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048349.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77471519 77473343 + Birc6 protein_coding processed_transcript MGP_CASTEiJ_T0048350.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77473266 77523986 + MGP_CASTEiJ_P0048350 Birc6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048351.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77478943 77489670 + Birc6 protein_coding retained_intron MGP_CASTEiJ_T0048352.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77491062 77502279 + Birc6 protein_coding retained_intron MGP_CASTEiJ_T0048353.1 MGP_CASTEiJ_G0023234.1 mouse_genomes_project 17 77517807 77523716 + Birc6 protein_coding retained_intron MGP_CASTEiJ_T0047433.1 MGP_CASTEiJ_G0022925.1 mouse_genomes_project 17 37762310 37763255 + MGP_CASTEiJ_P0047433 Olfr109 protein_coding protein_coding MGP_CASTEiJ_T0048125.1 MGP_CASTEiJ_G0023174.1 mouse_genomes_project 17 64753706 65050407 - MGP_CASTEiJ_P0048125 Efna5 protein_coding protein_coding MGP_CASTEiJ_T0048126.1 MGP_CASTEiJ_G0023174.1 mouse_genomes_project 17 64756841 65050232 - MGP_CASTEiJ_P0048126 Efna5 protein_coding protein_coding MGP_CASTEiJ_T0046638.1 MGP_CASTEiJ_G0022746.1 mouse_genomes_project 17 32677249 32681161 - MGP_CASTEiJ_P0046638 4921501E09Rik protein_coding protein_coding MGP_CASTEiJ_T0048204.1 MGP_CASTEiJ_G0023196.1 mouse_genomes_project 17 70010819 70012577 - MGP_CASTEiJ_P0048204 Lrrc30 protein_coding protein_coding MGP_CASTEiJ_T0101550.1 MGP_CASTEiJ_G0038432.1 mouse_genomes_project 17 27083109 27084569 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101551.1 MGP_CASTEiJ_G0038432.1 mouse_genomes_project 17 27083339 27084259 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0047524.1 MGP_CASTEiJ_G0022987.1 mouse_genomes_project 17 44700911 44956872 + MGP_CASTEiJ_P0047524 Rcan2 protein_coding protein_coding MGP_CASTEiJ_T0047525.1 MGP_CASTEiJ_G0022987.1 mouse_genomes_project 17 44868303 44954755 + MGP_CASTEiJ_P0047525 Rcan2 protein_coding protein_coding MGP_CASTEiJ_T0047526.1 MGP_CASTEiJ_G0022987.1 mouse_genomes_project 17 44868489 44956872 + MGP_CASTEiJ_P0047526 Rcan2 protein_coding protein_coding MGP_CASTEiJ_T0048376.1 MGP_CASTEiJ_G0023246.1 mouse_genomes_project 17 81898162 81931429 - MGP_CASTEiJ_P0048376 Eif2ak2 protein_coding protein_coding MGP_CASTEiJ_T0048377.1 MGP_CASTEiJ_G0023246.1 mouse_genomes_project 17 81900537 81904213 - Eif2ak2 protein_coding processed_transcript MGP_CASTEiJ_T0048378.1 MGP_CASTEiJ_G0023246.1 mouse_genomes_project 17 81918962 81931404 - Eif2ak2 protein_coding processed_transcript MGP_CASTEiJ_T0048379.1 MGP_CASTEiJ_G0023246.1 mouse_genomes_project 17 81923156 81931410 - Eif2ak2 protein_coding processed_transcript MGP_CASTEiJ_T0046471.1 MGP_CASTEiJ_G0022700.1 mouse_genomes_project 17 29416826 29804887 - MGP_CASTEiJ_P0046471 Btbd9 protein_coding protein_coding MGP_CASTEiJ_T0046472.1 MGP_CASTEiJ_G0022700.1 mouse_genomes_project 17 29416826 29804887 - MGP_CASTEiJ_P0046472 Btbd9 protein_coding protein_coding MGP_CASTEiJ_T0047434.1 MGP_CASTEiJ_G0022926.1 mouse_genomes_project 17 37770807 37773583 - MGP_CASTEiJ_P0047434 H2-M2 protein_coding protein_coding MGP_CASTEiJ_T0047435.1 MGP_CASTEiJ_G0022926.1 mouse_genomes_project 17 37771019 37773584 - MGP_CASTEiJ_P0047435 H2-M2 protein_coding protein_coding MGP_CASTEiJ_T0047429.1 MGP_CASTEiJ_G0022922.1 mouse_genomes_project 17 37652526 37653468 - MGP_CASTEiJ_P0047429 Olfr103 protein_coding protein_coding MGP_CASTEiJ_T0047430.1 MGP_CASTEiJ_G0022922.1 mouse_genomes_project 17 37652526 37655855 - MGP_CASTEiJ_P0047430 Olfr103 protein_coding protein_coding MGP_CASTEiJ_T0046792.1 MGP_CASTEiJ_G0022780.1 mouse_genomes_project 17 33692784 33699574 + MGP_CASTEiJ_P0046792 Rxrb protein_coding protein_coding MGP_CASTEiJ_T0046793.1 MGP_CASTEiJ_G0022780.1 mouse_genomes_project 17 33693155 33698882 + MGP_CASTEiJ_P0046793 Rxrb protein_coding protein_coding MGP_CASTEiJ_T0046794.1 MGP_CASTEiJ_G0022780.1 mouse_genomes_project 17 33693168 33695417 + MGP_CASTEiJ_P0046794 Rxrb protein_coding protein_coding MGP_CASTEiJ_T0046795.1 MGP_CASTEiJ_G0022780.1 mouse_genomes_project 17 33693347 33698997 + MGP_CASTEiJ_P0046795 Rxrb protein_coding protein_coding MGP_CASTEiJ_T0046796.1 MGP_CASTEiJ_G0022780.1 mouse_genomes_project 17 33693373 33699574 + MGP_CASTEiJ_P0046796 Rxrb protein_coding protein_coding MGP_CASTEiJ_T0046797.1 MGP_CASTEiJ_G0022780.1 mouse_genomes_project 17 33694765 33697199 + Rxrb protein_coding retained_intron MGP_CASTEiJ_T0046798.1 MGP_CASTEiJ_G0022780.1 mouse_genomes_project 17 33695122 33697562 + Rxrb protein_coding retained_intron MGP_CASTEiJ_T0046799.1 MGP_CASTEiJ_G0022780.1 mouse_genomes_project 17 33697511 33698462 + Rxrb protein_coding retained_intron MGP_CASTEiJ_T0046800.1 MGP_CASTEiJ_G0022780.1 mouse_genomes_project 17 33697555 33698495 + Rxrb protein_coding retained_intron MGP_CASTEiJ_T0046801.1 MGP_CASTEiJ_G0022780.1 mouse_genomes_project 17 33697651 33698716 + Rxrb protein_coding retained_intron MGP_CASTEiJ_T0047721.1 MGP_CASTEiJ_G0023032.1 mouse_genomes_project 17 47770942 47781704 - MGP_CASTEiJ_P0047721 Rrp36 protein_coding protein_coding MGP_CASTEiJ_T0046973.1 MGP_CASTEiJ_G0022817.1 mouse_genomes_project 17 34674563 34680560 + MGP_CASTEiJ_P0046973 Nelfe protein_coding protein_coding MGP_CASTEiJ_T0046974.1 MGP_CASTEiJ_G0022817.1 mouse_genomes_project 17 34674570 34680445 + MGP_CASTEiJ_P0046974 Nelfe protein_coding protein_coding MGP_CASTEiJ_T0046975.1 MGP_CASTEiJ_G0022817.1 mouse_genomes_project 17 34674580 34678280 + MGP_CASTEiJ_P0046975 Nelfe protein_coding protein_coding MGP_CASTEiJ_T0046976.1 MGP_CASTEiJ_G0022817.1 mouse_genomes_project 17 34674580 34680563 + MGP_CASTEiJ_P0046976 Nelfe protein_coding protein_coding MGP_CASTEiJ_T0046977.1 MGP_CASTEiJ_G0022817.1 mouse_genomes_project 17 34676780 34678042 + Nelfe protein_coding retained_intron MGP_CASTEiJ_T0046978.1 MGP_CASTEiJ_G0022817.1 mouse_genomes_project 17 34678108 34678717 + Nelfe protein_coding retained_intron MGP_CASTEiJ_T0046979.1 MGP_CASTEiJ_G0022817.1 mouse_genomes_project 17 34678446 34678945 + Nelfe protein_coding retained_intron MGP_CASTEiJ_T0046389.1 MGP_CASTEiJ_G0022681.1 mouse_genomes_project 17 28145786 28155505 + Srsf3 protein_coding retained_intron MGP_CASTEiJ_T0046390.1 MGP_CASTEiJ_G0022681.1 mouse_genomes_project 17 28145786 28155525 + MGP_CASTEiJ_P0046390 Srsf3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046391.1 MGP_CASTEiJ_G0022681.1 mouse_genomes_project 17 28145786 28156629 + MGP_CASTEiJ_P0046391 Srsf3 protein_coding protein_coding MGP_CASTEiJ_T0046392.1 MGP_CASTEiJ_G0022681.1 mouse_genomes_project 17 28149404 28153407 + Srsf3 protein_coding retained_intron MGP_CASTEiJ_T0047802.1 MGP_CASTEiJ_G0023061.1 mouse_genomes_project 17 48897542 48900494 - MGP_CASTEiJ_P0047802 protein_coding protein_coding MGP_CASTEiJ_T0047803.1 MGP_CASTEiJ_G0023061.1 mouse_genomes_project 17 48897542 48901488 - MGP_CASTEiJ_P0047803 protein_coding protein_coding MGP_CASTEiJ_T0047804.1 MGP_CASTEiJ_G0023061.1 mouse_genomes_project 17 48897644 48899914 - protein_coding retained_intron MGP_CASTEiJ_T0047806.1 MGP_CASTEiJ_G0023061.1 mouse_genomes_project 17 48898602 48900421 - MGP_CASTEiJ_P0047806 protein_coding protein_coding MGP_CASTEiJ_T0047807.1 MGP_CASTEiJ_G0023061.1 mouse_genomes_project 17 48901237 48903796 - protein_coding retained_intron MGP_CASTEiJ_T0047710.1 MGP_CASTEiJ_G0023030.1 mouse_genomes_project 17 47751009 47754898 + MGP_CASTEiJ_P0047710 Mrpl2 protein_coding protein_coding MGP_CASTEiJ_T0047711.1 MGP_CASTEiJ_G0023030.1 mouse_genomes_project 17 47751021 47752427 + Mrpl2 protein_coding processed_transcript MGP_CASTEiJ_T0047712.1 MGP_CASTEiJ_G0023030.1 mouse_genomes_project 17 47751048 47754899 + MGP_CASTEiJ_P0047712 Mrpl2 protein_coding protein_coding MGP_CASTEiJ_T0047713.1 MGP_CASTEiJ_G0023030.1 mouse_genomes_project 17 47753771 47754758 + Mrpl2 protein_coding processed_transcript MGP_CASTEiJ_T0009940.1 MGP_CASTEiJ_G0008128.1 mouse_genomes_project 17 47644558 47644621 - Mir6976 miRNA miRNA MGP_CASTEiJ_T0009946.1 MGP_CASTEiJ_G0008134.1 mouse_genomes_project 17 65527068 65527152 + Gm24813 miRNA miRNA MGP_CASTEiJ_T0098354.1 MGP_CASTEiJ_G0035285.1 mouse_genomes_project 17 33031556 33032926 + pseudogene pseudogene MGP_CASTEiJ_T0045998.1 MGP_CASTEiJ_G0022596.1 mouse_genomes_project 17 24556518 24568684 + MGP_CASTEiJ_P0045998 Fbxl16 protein_coding protein_coding MGP_CASTEiJ_T0047470.1 MGP_CASTEiJ_G0022955.1 mouse_genomes_project 17 39662083 39663916 + MGP_CASTEiJ_P0047470 Esp24 protein_coding protein_coding MGP_CASTEiJ_T0045861.1 MGP_CASTEiJ_G0022560.1 mouse_genomes_project 17 23613919 23634977 - MGP_CASTEiJ_P0045861 Hn1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0045452.1 MGP_CASTEiJ_G0022420.1 mouse_genomes_project 17 13174820 13182894 - MGP_CASTEiJ_P0045452 Pdcd2 protein_coding protein_coding MGP_CASTEiJ_T0045453.1 MGP_CASTEiJ_G0022420.1 mouse_genomes_project 17 13177192 13182914 - MGP_CASTEiJ_P0045453 Pdcd2 protein_coding protein_coding MGP_CASTEiJ_T0045454.1 MGP_CASTEiJ_G0022420.1 mouse_genomes_project 17 13177195 13182913 - MGP_CASTEiJ_P0045454 Pdcd2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045455.1 MGP_CASTEiJ_G0022420.1 mouse_genomes_project 17 13177210 13177761 - Pdcd2 protein_coding retained_intron MGP_CASTEiJ_T0045456.1 MGP_CASTEiJ_G0022420.1 mouse_genomes_project 17 13178321 13182697 - Pdcd2 protein_coding retained_intron MGP_CASTEiJ_T0045457.1 MGP_CASTEiJ_G0022420.1 mouse_genomes_project 17 13178409 13182599 - Pdcd2 protein_coding retained_intron MGP_CASTEiJ_T0009944.1 MGP_CASTEiJ_G0008132.1 mouse_genomes_project 17 58235222 58235286 - Mir6977 miRNA miRNA MGP_CASTEiJ_T0045507.1 MGP_CASTEiJ_G0022442.1 mouse_genomes_project 17 17866313 17882134 - MGP_CASTEiJ_P0045507 protein_coding protein_coding MGP_CASTEiJ_T0047506.1 MGP_CASTEiJ_G0022980.1 mouse_genomes_project 17 44225667 44306917 + MGP_CASTEiJ_P0047506 Adgrf5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047507.1 MGP_CASTEiJ_G0022980.1 mouse_genomes_project 17 44225709 44306915 + MGP_CASTEiJ_P0047507 Adgrf5 protein_coding protein_coding MGP_CASTEiJ_T0047922.1 MGP_CASTEiJ_G0023090.1 mouse_genomes_project 17 52252393 52770175 - MGP_CASTEiJ_P0047922 Tbc1d5 protein_coding protein_coding MGP_CASTEiJ_T0009902.1 MGP_CASTEiJ_G0008090.1 mouse_genomes_project 17 19410271 19410380 - Gm26384 miRNA miRNA MGP_CASTEiJ_T0047923.1 MGP_CASTEiJ_G0023091.1 mouse_genomes_project 17 53360835 53456888 - MGP_CASTEiJ_P0047923 Satb1 protein_coding protein_coding MGP_CASTEiJ_T0047924.1 MGP_CASTEiJ_G0023091.1 mouse_genomes_project 17 53360836 53450805 - MGP_CASTEiJ_P0047924 Satb1 protein_coding protein_coding MGP_CASTEiJ_T0047925.1 MGP_CASTEiJ_G0023091.1 mouse_genomes_project 17 53363546 53459277 - MGP_CASTEiJ_P0047925 Satb1 protein_coding protein_coding MGP_CASTEiJ_T0047926.1 MGP_CASTEiJ_G0023091.1 mouse_genomes_project 17 53364105 53435132 - MGP_CASTEiJ_P0047926 Satb1 protein_coding protein_coding MGP_CASTEiJ_T0047927.1 MGP_CASTEiJ_G0023091.1 mouse_genomes_project 17 53364110 53450783 - MGP_CASTEiJ_P0047927 Satb1 protein_coding protein_coding MGP_CASTEiJ_T0047928.1 MGP_CASTEiJ_G0023091.1 mouse_genomes_project 17 53364126 53439234 - MGP_CASTEiJ_P0047928 Satb1 protein_coding protein_coding MGP_CASTEiJ_T0047929.1 MGP_CASTEiJ_G0023091.1 mouse_genomes_project 17 53364131 53436902 - MGP_CASTEiJ_P0047929 Satb1 protein_coding protein_coding MGP_CASTEiJ_T0047930.1 MGP_CASTEiJ_G0023091.1 mouse_genomes_project 17 53364643 53366923 - Satb1 protein_coding retained_intron MGP_CASTEiJ_T0047931.1 MGP_CASTEiJ_G0023091.1 mouse_genomes_project 17 53426535 53433345 - Satb1 protein_coding processed_transcript MGP_CASTEiJ_T0047932.1 MGP_CASTEiJ_G0023091.1 mouse_genomes_project 17 53428574 53445300 - MGP_CASTEiJ_P0047932 Satb1 protein_coding protein_coding MGP_CASTEiJ_T0047933.1 MGP_CASTEiJ_G0023091.1 mouse_genomes_project 17 53429572 53456234 - MGP_CASTEiJ_P0047933 Satb1 protein_coding protein_coding MGP_CASTEiJ_T0047934.1 MGP_CASTEiJ_G0023091.1 mouse_genomes_project 17 53431292 53435132 - Satb1 protein_coding retained_intron MGP_CASTEiJ_T0047935.1 MGP_CASTEiJ_G0023091.1 mouse_genomes_project 17 53433401 53450805 - MGP_CASTEiJ_P0047935 Satb1 protein_coding protein_coding MGP_CASTEiJ_T0047936.1 MGP_CASTEiJ_G0023091.1 mouse_genomes_project 17 53448870 53453715 - Satb1 protein_coding retained_intron MGP_CASTEiJ_T0047620.1 MGP_CASTEiJ_G0023008.1 mouse_genomes_project 17 47203751 47220839 + MGP_CASTEiJ_P0047620 Mrps18a protein_coding protein_coding MGP_CASTEiJ_T0047621.1 MGP_CASTEiJ_G0023008.1 mouse_genomes_project 17 47203760 47215049 + Mrps18a protein_coding retained_intron MGP_CASTEiJ_T0047622.1 MGP_CASTEiJ_G0023008.1 mouse_genomes_project 17 47203761 47217777 + MGP_CASTEiJ_P0047622 Mrps18a protein_coding protein_coding MGP_CASTEiJ_T0047624.1 MGP_CASTEiJ_G0023008.1 mouse_genomes_project 17 47214724 47220799 + Mrps18a protein_coding processed_transcript MGP_CASTEiJ_T0047625.1 MGP_CASTEiJ_G0023008.1 mouse_genomes_project 17 47217186 47219653 + Mrps18a protein_coding retained_intron MGP_CASTEiJ_T0047626.1 MGP_CASTEiJ_G0023008.1 mouse_genomes_project 17 47217369 47220722 + Mrps18a protein_coding retained_intron MGP_CASTEiJ_T0009922.1 MGP_CASTEiJ_G0008110.1 mouse_genomes_project 17 27619870 27619931 - Mir6969 miRNA miRNA MGP_CASTEiJ_T0003614.1 MGP_CASTEiJ_G0003267.1 mouse_genomes_project 17 28028794 28039838 + Gm16191 antisense antisense MGP_CASTEiJ_T0003615.1 MGP_CASTEiJ_G0003267.1 mouse_genomes_project 17 28037147 28037827 + Gm16191 antisense antisense MGP_CASTEiJ_T0047198.1 MGP_CASTEiJ_G0022867.1 mouse_genomes_project 17 35735083 35741135 - MGP_CASTEiJ_P0047198 Gtf2h4 protein_coding protein_coding MGP_CASTEiJ_T0047199.1 MGP_CASTEiJ_G0022867.1 mouse_genomes_project 17 35735091 35736156 - Gtf2h4 protein_coding retained_intron MGP_CASTEiJ_T0047200.1 MGP_CASTEiJ_G0022867.1 mouse_genomes_project 17 35735092 35737233 - Gtf2h4 protein_coding retained_intron MGP_CASTEiJ_T0047201.1 MGP_CASTEiJ_G0022867.1 mouse_genomes_project 17 35735094 35741014 - MGP_CASTEiJ_P0047201 Gtf2h4 protein_coding protein_coding MGP_CASTEiJ_T0047202.1 MGP_CASTEiJ_G0022867.1 mouse_genomes_project 17 35735183 35741099 - MGP_CASTEiJ_P0047202 Gtf2h4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047203.1 MGP_CASTEiJ_G0022867.1 mouse_genomes_project 17 35737766 35741084 - Gtf2h4 protein_coding retained_intron MGP_CASTEiJ_T0047204.1 MGP_CASTEiJ_G0022867.1 mouse_genomes_project 17 35738123 35741086 - MGP_CASTEiJ_P0047204 Gtf2h4 protein_coding protein_coding MGP_CASTEiJ_T0047205.1 MGP_CASTEiJ_G0022867.1 mouse_genomes_project 17 35738724 35740913 - MGP_CASTEiJ_P0047205 Gtf2h4 protein_coding protein_coding MGP_CASTEiJ_T0047206.1 MGP_CASTEiJ_G0022867.1 mouse_genomes_project 17 35739142 35741077 - Gtf2h4 protein_coding retained_intron MGP_CASTEiJ_T0047207.1 MGP_CASTEiJ_G0022867.1 mouse_genomes_project 17 35739279 35740694 - Gtf2h4 protein_coding retained_intron MGP_CASTEiJ_T0047208.1 MGP_CASTEiJ_G0022867.1 mouse_genomes_project 17 35739435 35740955 - Gtf2h4 protein_coding processed_transcript MGP_CASTEiJ_T0047209.1 MGP_CASTEiJ_G0022867.1 mouse_genomes_project 17 35739450 35741055 - MGP_CASTEiJ_P0047209 Gtf2h4 protein_coding protein_coding MGP_CASTEiJ_T0047993.1 MGP_CASTEiJ_G0023120.1 mouse_genomes_project 17 57897338 57903349 - MGP_CASTEiJ_P0047993 Plin5 protein_coding protein_coding MGP_CASTEiJ_T0047994.1 MGP_CASTEiJ_G0023120.1 mouse_genomes_project 17 57897344 57903050 - MGP_CASTEiJ_P0047994 Plin5 protein_coding protein_coding MGP_CASTEiJ_T0098850.1 MGP_CASTEiJ_G0035776.1 mouse_genomes_project 17 65481647 65489157 - 4930405O22Rik sense_intronic sense_intronic MGP_CASTEiJ_T0098851.1 MGP_CASTEiJ_G0035776.1 mouse_genomes_project 17 65481880 65489159 - 4930405O22Rik sense_intronic sense_intronic MGP_CASTEiJ_T0045585.1 MGP_CASTEiJ_G0022489.1 mouse_genomes_project 17 22126273 22138369 + MGP_CASTEiJ_P0045585 Zscan10 protein_coding protein_coding MGP_CASTEiJ_T0045586.1 MGP_CASTEiJ_G0022489.1 mouse_genomes_project 17 22126273 22138369 + MGP_CASTEiJ_P0045586 Zscan10 protein_coding protein_coding MGP_CASTEiJ_T0045587.1 MGP_CASTEiJ_G0022489.1 mouse_genomes_project 17 22126273 22138376 + MGP_CASTEiJ_P0045587 Zscan10 protein_coding protein_coding MGP_CASTEiJ_T0045588.1 MGP_CASTEiJ_G0022489.1 mouse_genomes_project 17 22126279 22138178 + MGP_CASTEiJ_P0045588 Zscan10 protein_coding protein_coding MGP_CASTEiJ_T0045589.1 MGP_CASTEiJ_G0022489.1 mouse_genomes_project 17 22126279 22138178 + MGP_CASTEiJ_P0045589 Zscan10 protein_coding protein_coding MGP_CASTEiJ_T0045590.1 MGP_CASTEiJ_G0022489.1 mouse_genomes_project 17 22126358 22137057 + MGP_CASTEiJ_P0045590 Zscan10 protein_coding protein_coding MGP_CASTEiJ_T0045591.1 MGP_CASTEiJ_G0022489.1 mouse_genomes_project 17 22131588 22133274 + Zscan10 protein_coding retained_intron MGP_CASTEiJ_T0045592.1 MGP_CASTEiJ_G0022489.1 mouse_genomes_project 17 22131612 22137053 + MGP_CASTEiJ_P0045592 Zscan10 protein_coding protein_coding MGP_CASTEiJ_T0045593.1 MGP_CASTEiJ_G0022489.1 mouse_genomes_project 17 22131621 22137053 + MGP_CASTEiJ_P0045593 Zscan10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045594.1 MGP_CASTEiJ_G0022489.1 mouse_genomes_project 17 22131621 22137054 + MGP_CASTEiJ_P0045594 Zscan10 protein_coding protein_coding MGP_CASTEiJ_T0045595.1 MGP_CASTEiJ_G0022489.1 mouse_genomes_project 17 22131622 22137054 + MGP_CASTEiJ_P0045595 Zscan10 protein_coding protein_coding MGP_CASTEiJ_T0045596.1 MGP_CASTEiJ_G0022489.1 mouse_genomes_project 17 22133593 22137053 + Zscan10 protein_coding retained_intron MGP_CASTEiJ_T0046200.1 MGP_CASTEiJ_G0022641.1 mouse_genomes_project 17 26010854 26022122 - MGP_CASTEiJ_P0046200 Uqcc2 protein_coding protein_coding MGP_CASTEiJ_T0046201.1 MGP_CASTEiJ_G0022641.1 mouse_genomes_project 17 26010859 26021829 - Uqcc2 protein_coding processed_transcript MGP_CASTEiJ_T0046202.1 MGP_CASTEiJ_G0022641.1 mouse_genomes_project 17 26010861 26022108 - MGP_CASTEiJ_P0046202 Uqcc2 protein_coding protein_coding MGP_CASTEiJ_T0046203.1 MGP_CASTEiJ_G0022641.1 mouse_genomes_project 17 26010861 26021835 - MGP_CASTEiJ_P0046203 Uqcc2 protein_coding protein_coding MGP_CASTEiJ_T0046330.1 MGP_CASTEiJ_G0022669.1 mouse_genomes_project 17 27619639 27621967 - MGP_CASTEiJ_P0046330 Clps protein_coding protein_coding MGP_CASTEiJ_T0046331.1 MGP_CASTEiJ_G0022669.1 mouse_genomes_project 17 27619642 27621912 - MGP_CASTEiJ_P0046331 Clps protein_coding protein_coding MGP_CASTEiJ_T0045440.1 MGP_CASTEiJ_G0022418.1 mouse_genomes_project 17 13135823 13153501 - MGP_CASTEiJ_P0045440 Psmb1 protein_coding protein_coding MGP_CASTEiJ_T0006810.1 MGP_CASTEiJ_G0005618.1 mouse_genomes_project 17 90441850 90442535 + Gm29168 lincRNA lincRNA MGP_CASTEiJ_T0046492.1 MGP_CASTEiJ_G0022711.1 mouse_genomes_project 17 30650461 30680577 + MGP_CASTEiJ_P0046492 Rsph1 protein_coding protein_coding MGP_CASTEiJ_T0009904.1 MGP_CASTEiJ_G0008092.1 mouse_genomes_project 17 22588369 22588450 + Gm27700 miRNA miRNA MGP_CASTEiJ_T0047995.1 MGP_CASTEiJ_G0023121.1 mouse_genomes_project 17 57905430 57907698 - MGP_CASTEiJ_P0047995 Lrg1 protein_coding protein_coding MGP_CASTEiJ_T0046003.1 MGP_CASTEiJ_G0022598.1 mouse_genomes_project 17 24576303 24579257 + MGP_CASTEiJ_P0046003 Jmjd8 protein_coding protein_coding MGP_CASTEiJ_T0046004.1 MGP_CASTEiJ_G0022598.1 mouse_genomes_project 17 24576471 24579259 + MGP_CASTEiJ_P0046004 Jmjd8 protein_coding protein_coding MGP_CASTEiJ_T0046005.1 MGP_CASTEiJ_G0022598.1 mouse_genomes_project 17 24576492 24577579 + Jmjd8 protein_coding retained_intron MGP_CASTEiJ_T0046006.1 MGP_CASTEiJ_G0022598.1 mouse_genomes_project 17 24576499 24578042 + MGP_CASTEiJ_P0046006 Jmjd8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046007.1 MGP_CASTEiJ_G0022598.1 mouse_genomes_project 17 24576548 24578050 + MGP_CASTEiJ_P0046007 Jmjd8 protein_coding protein_coding MGP_CASTEiJ_T0046008.1 MGP_CASTEiJ_G0022598.1 mouse_genomes_project 17 24576549 24577779 + Jmjd8 protein_coding retained_intron MGP_CASTEiJ_T0046009.1 MGP_CASTEiJ_G0022598.1 mouse_genomes_project 17 24576725 24577943 + Jmjd8 protein_coding retained_intron MGP_CASTEiJ_T0046010.1 MGP_CASTEiJ_G0022598.1 mouse_genomes_project 17 24577267 24578138 + Jmjd8 protein_coding retained_intron MGP_CASTEiJ_T0045511.1 MGP_CASTEiJ_G0022446.1 mouse_genomes_project 17 18217446 18237407 - MGP_CASTEiJ_P0045511 Vmn2r106 protein_coding protein_coding MGP_CASTEiJ_T0046866.1 MGP_CASTEiJ_G0022798.1 mouse_genomes_project 17 34055722 34064277 + MGP_CASTEiJ_P0046866 Btnl1 protein_coding protein_coding MGP_CASTEiJ_T0003612.1 MGP_CASTEiJ_G0003265.1 mouse_genomes_project 17 27952313 27956677 - Pnpla1os antisense antisense MGP_CASTEiJ_T0009943.1 MGP_CASTEiJ_G0008131.1 mouse_genomes_project 17 58040489 58040600 + Mir7b miRNA miRNA MGP_CASTEiJ_T0102136.1 MGP_CASTEiJ_G0038861.1 mouse_genomes_project 17 21745252 21775615 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102141.1 MGP_CASTEiJ_G0038866.1 mouse_genomes_project 17 33747140 33748295 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0047402.1 MGP_CASTEiJ_G0022906.1 mouse_genomes_project 17 37274213 37288583 - MGP_CASTEiJ_P0047402 Mog protein_coding protein_coding MGP_CASTEiJ_T0047403.1 MGP_CASTEiJ_G0022906.1 mouse_genomes_project 17 37274973 37288384 - MGP_CASTEiJ_P0047403 Mog protein_coding protein_coding MGP_CASTEiJ_T0045641.1 MGP_CASTEiJ_G0022505.1 mouse_genomes_project 17 22376168 22378552 - MGP_CASTEiJ_P0045641 Prss33 protein_coding protein_coding MGP_CASTEiJ_T0045642.1 MGP_CASTEiJ_G0022505.1 mouse_genomes_project 17 22376548 22378548 - MGP_CASTEiJ_P0045642 Prss33 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045643.1 MGP_CASTEiJ_G0022505.1 mouse_genomes_project 17 22377476 22378865 - Prss33 protein_coding retained_intron MGP_CASTEiJ_T0047419.1 MGP_CASTEiJ_G0022912.1 mouse_genomes_project 17 37488032 37490236 + MGP_CASTEiJ_P0047419 Ubd protein_coding protein_coding MGP_CASTEiJ_T0006758.1 MGP_CASTEiJ_G0005580.1 mouse_genomes_project 17 33658474 36307995 + lincRNA lincRNA MGP_CASTEiJ_T0006759.1 MGP_CASTEiJ_G0005580.1 mouse_genomes_project 17 33658474 36307994 + lincRNA lincRNA MGP_CASTEiJ_T0006765.1 MGP_CASTEiJ_G0005580.1 mouse_genomes_project 17 35314771 36308774 + lincRNA lincRNA MGP_CASTEiJ_T0009903.1 MGP_CASTEiJ_G0008091.1 mouse_genomes_project 17 22364616 22364695 + Mir5125 miRNA miRNA MGP_CASTEiJ_T0101553.1 MGP_CASTEiJ_G0038434.1 mouse_genomes_project 17 91850933 91856444 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101554.1 MGP_CASTEiJ_G0038434.1 mouse_genomes_project 17 91856152 91856545 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0016801.1 MGP_CASTEiJ_G0014651.1 mouse_genomes_project 17 12705336 12720658 + Gm28869 processed_transcript processed_transcript MGP_CASTEiJ_T0047941.1 MGP_CASTEiJ_G0023095.1 mouse_genomes_project 17 55177350 55220024 - MGP_CASTEiJ_P0047941 Pp2d1 protein_coding protein_coding MGP_CASTEiJ_T0003593.1 MGP_CASTEiJ_G0003252.1 mouse_genomes_project 17 10393504 10518302 + antisense antisense MGP_CASTEiJ_T0003594.1 MGP_CASTEiJ_G0003252.1 mouse_genomes_project 17 10393523 10487311 + antisense antisense MGP_CASTEiJ_T0003595.1 MGP_CASTEiJ_G0003252.1 mouse_genomes_project 17 10393567 10472607 + antisense antisense MGP_CASTEiJ_T0003596.1 MGP_CASTEiJ_G0003252.1 mouse_genomes_project 17 10393578 10471767 + antisense antisense MGP_CASTEiJ_T0003597.1 MGP_CASTEiJ_G0003252.1 mouse_genomes_project 17 10393591 10487212 + antisense antisense MGP_CASTEiJ_T0003598.1 MGP_CASTEiJ_G0003252.1 mouse_genomes_project 17 10472980 10487396 + antisense antisense MGP_CASTEiJ_T0045662.1 MGP_CASTEiJ_G0022515.1 mouse_genomes_project 17 22661573 22732064 - MGP_CASTEiJ_P0045662 Pdpk1 protein_coding protein_coding MGP_CASTEiJ_T0045663.1 MGP_CASTEiJ_G0022515.1 mouse_genomes_project 17 22661581 22732157 - MGP_CASTEiJ_P0045663 Pdpk1 protein_coding protein_coding MGP_CASTEiJ_T0045664.1 MGP_CASTEiJ_G0022515.1 mouse_genomes_project 17 22663710 22732174 - MGP_CASTEiJ_P0045664 Pdpk1 protein_coding protein_coding MGP_CASTEiJ_T0045665.1 MGP_CASTEiJ_G0022515.1 mouse_genomes_project 17 22676060 22681692 - Pdpk1 protein_coding processed_transcript MGP_CASTEiJ_T0045666.1 MGP_CASTEiJ_G0022515.1 mouse_genomes_project 17 22679457 22743634 - Pdpk1 protein_coding processed_transcript MGP_CASTEiJ_T0045667.1 MGP_CASTEiJ_G0022515.1 mouse_genomes_project 17 22692210 22732160 - Pdpk1 protein_coding retained_intron MGP_CASTEiJ_T0045668.1 MGP_CASTEiJ_G0022515.1 mouse_genomes_project 17 22695030 22731394 - MGP_CASTEiJ_P0045668 Pdpk1 protein_coding protein_coding MGP_CASTEiJ_T0045669.1 MGP_CASTEiJ_G0022515.1 mouse_genomes_project 17 22695082 22709948 - MGP_CASTEiJ_P0045669 Pdpk1 protein_coding protein_coding MGP_CASTEiJ_T0045670.1 MGP_CASTEiJ_G0022515.1 mouse_genomes_project 17 22699094 22731732 - MGP_CASTEiJ_P0045670 Pdpk1 protein_coding protein_coding MGP_CASTEiJ_T0048414.1 MGP_CASTEiJ_G0023260.1 mouse_genomes_project 17 83363048 83370262 - MGP_CASTEiJ_P0048414 Srsf7 protein_coding protein_coding MGP_CASTEiJ_T0046522.1 MGP_CASTEiJ_G0022716.1 mouse_genomes_project 17 31026478 31057836 + MGP_CASTEiJ_P0046522 Pknox1 protein_coding protein_coding MGP_CASTEiJ_T0046523.1 MGP_CASTEiJ_G0022716.1 mouse_genomes_project 17 31028225 31060044 + MGP_CASTEiJ_P0046523 Pknox1 protein_coding protein_coding MGP_CASTEiJ_T0046524.1 MGP_CASTEiJ_G0022716.1 mouse_genomes_project 17 31028369 31060040 + MGP_CASTEiJ_P0046524 Pknox1 protein_coding protein_coding MGP_CASTEiJ_T0046525.1 MGP_CASTEiJ_G0022716.1 mouse_genomes_project 17 31039483 31039910 + Pknox1 protein_coding processed_transcript MGP_CASTEiJ_T0046526.1 MGP_CASTEiJ_G0022716.1 mouse_genomes_project 17 31042527 31047301 + Pknox1 protein_coding retained_intron MGP_CASTEiJ_T0046527.1 MGP_CASTEiJ_G0022716.1 mouse_genomes_project 17 31052005 31052847 + Pknox1 protein_coding retained_intron MGP_CASTEiJ_T0003660.1 MGP_CASTEiJ_G0003298.1 mouse_genomes_project 17 66980771 66986000 - Gm17133 antisense antisense MGP_CASTEiJ_T0047768.1 MGP_CASTEiJ_G0023051.1 mouse_genomes_project 17 48608916 48646887 + MGP_CASTEiJ_P0047768 AI661453 protein_coding protein_coding MGP_CASTEiJ_T0047769.1 MGP_CASTEiJ_G0023051.1 mouse_genomes_project 17 48608971 48647371 + MGP_CASTEiJ_P0047769 AI661453 protein_coding protein_coding MGP_CASTEiJ_T0047441.1 MGP_CASTEiJ_G0022931.1 mouse_genomes_project 17 37958835 37960102 - MGP_CASTEiJ_P0047441 protein_coding protein_coding MGP_CASTEiJ_T0012830.1 MGP_CASTEiJ_G0010993.1 mouse_genomes_project 17 8479817 8480193 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045535.1 MGP_CASTEiJ_G0022464.1 mouse_genomes_project 17 19412695 19413816 + MGP_CASTEiJ_P0045535 Vmn1r236 protein_coding protein_coding MGP_CASTEiJ_T0046781.1 MGP_CASTEiJ_G0022778.1 mouse_genomes_project 17 33686128 33687939 - MGP_CASTEiJ_P0046781 H2-Ke6 protein_coding protein_coding MGP_CASTEiJ_T0046782.1 MGP_CASTEiJ_G0022778.1 mouse_genomes_project 17 33686131 33687929 - H2-Ke6 protein_coding retained_intron MGP_CASTEiJ_T0046783.1 MGP_CASTEiJ_G0022778.1 mouse_genomes_project 17 33686503 33687746 - H2-Ke6 protein_coding processed_transcript MGP_CASTEiJ_T0046784.1 MGP_CASTEiJ_G0022778.1 mouse_genomes_project 17 33686637 33687943 - MGP_CASTEiJ_P0046784 H2-Ke6 protein_coding protein_coding MGP_CASTEiJ_T0046785.1 MGP_CASTEiJ_G0022778.1 mouse_genomes_project 17 33686801 33687921 - H2-Ke6 protein_coding retained_intron MGP_CASTEiJ_T0047475.1 MGP_CASTEiJ_G0022960.1 mouse_genomes_project 17 41024666 41050829 - MGP_CASTEiJ_P0047475 protein_coding protein_coding MGP_CASTEiJ_T0048510.1 MGP_CASTEiJ_G0023303.1 mouse_genomes_project 17 90726315 90757382 + MGP_CASTEiJ_P0048510 Socs5 protein_coding protein_coding MGP_CASTEiJ_T0102182.1 MGP_CASTEiJ_G0038907.1 mouse_genomes_project 17 37711736 37712458 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102142.1 MGP_CASTEiJ_G0038867.1 mouse_genomes_project 17 34018072 34019770 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045351.1 MGP_CASTEiJ_G0022391.1 mouse_genomes_project 17 10041138 10143353 - MGP_CASTEiJ_P0045351 Slc22a3 protein_coding protein_coding MGP_CASTEiJ_T0012875.1 MGP_CASTEiJ_G0011038.1 mouse_genomes_project 17 48828983 48831515 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011108.1 MGP_CASTEiJ_G0009296.1 mouse_genomes_project 17 89109907 89109981 + Gm27610 misc_RNA misc_RNA MGP_CASTEiJ_T0006773.1 MGP_CASTEiJ_G0005593.1 mouse_genomes_project 17 46443966 46452661 + B230354K17Rik lincRNA lincRNA MGP_CASTEiJ_T0045515.1 MGP_CASTEiJ_G0022450.1 mouse_genomes_project 17 18449083 18472522 - MGP_CASTEiJ_P0045515 Vmn2r108 protein_coding protein_coding MGP_CASTEiJ_T0045697.1 MGP_CASTEiJ_G0022520.1 mouse_genomes_project 17 22809633 22815328 - MGP_CASTEiJ_P0045697 1600002H07Rik protein_coding protein_coding MGP_CASTEiJ_T0045698.1 MGP_CASTEiJ_G0022520.1 mouse_genomes_project 17 22809818 22815389 - 1600002H07Rik protein_coding retained_intron MGP_CASTEiJ_T0045699.1 MGP_CASTEiJ_G0022520.1 mouse_genomes_project 17 22810125 22815230 - MGP_CASTEiJ_P0045699 1600002H07Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045700.1 MGP_CASTEiJ_G0022520.1 mouse_genomes_project 17 22813716 22815269 - 1600002H07Rik protein_coding retained_intron MGP_CASTEiJ_T0045701.1 MGP_CASTEiJ_G0022520.1 mouse_genomes_project 17 22814318 22815291 - 1600002H07Rik protein_coding retained_intron MGP_CASTEiJ_T0003667.1 MGP_CASTEiJ_G0003305.1 mouse_genomes_project 17 90960946 90963228 - Gm15978 antisense antisense MGP_CASTEiJ_T0047421.1 MGP_CASTEiJ_G0022914.1 mouse_genomes_project 17 37504537 37505511 - MGP_CASTEiJ_P0047421 Olfr95 protein_coding protein_coding MGP_CASTEiJ_T0012827.1 MGP_CASTEiJ_G0010990.1 mouse_genomes_project 17 6000236 6004796 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009933.1 MGP_CASTEiJ_G0008121.1 mouse_genomes_project 17 35063414 35063497 - Mir6974 miRNA miRNA MGP_CASTEiJ_T0099555.1 MGP_CASTEiJ_G0036468.1 mouse_genomes_project 17 98365847 98365956 - Gm22593 snRNA snRNA MGP_CASTEiJ_T0046963.1 MGP_CASTEiJ_G0022816.1 mouse_genomes_project 17 34663394 34674383 - Skiv2l protein_coding retained_intron MGP_CASTEiJ_T0046964.1 MGP_CASTEiJ_G0022816.1 mouse_genomes_project 17 34663410 34674383 - MGP_CASTEiJ_P0046964 Skiv2l protein_coding protein_coding MGP_CASTEiJ_T0046965.1 MGP_CASTEiJ_G0022816.1 mouse_genomes_project 17 34663415 34674365 - Skiv2l protein_coding retained_intron MGP_CASTEiJ_T0046966.1 MGP_CASTEiJ_G0022816.1 mouse_genomes_project 17 34663463 34674371 - Skiv2l protein_coding retained_intron MGP_CASTEiJ_T0046967.1 MGP_CASTEiJ_G0022816.1 mouse_genomes_project 17 34664696 34665295 - Skiv2l protein_coding retained_intron MGP_CASTEiJ_T0046968.1 MGP_CASTEiJ_G0022816.1 mouse_genomes_project 17 34664768 34667032 - MGP_CASTEiJ_P0046968 Skiv2l protein_coding protein_coding MGP_CASTEiJ_T0046969.1 MGP_CASTEiJ_G0022816.1 mouse_genomes_project 17 34665522 34668623 - Skiv2l protein_coding retained_intron MGP_CASTEiJ_T0046970.1 MGP_CASTEiJ_G0022816.1 mouse_genomes_project 17 34669193 34671360 - Skiv2l protein_coding retained_intron MGP_CASTEiJ_T0046971.1 MGP_CASTEiJ_G0022816.1 mouse_genomes_project 17 34669270 34670806 - Skiv2l protein_coding retained_intron MGP_CASTEiJ_T0046972.1 MGP_CASTEiJ_G0022816.1 mouse_genomes_project 17 34670688 34674368 - MGP_CASTEiJ_P0046972 Skiv2l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047242.1 MGP_CASTEiJ_G0022873.1 mouse_genomes_project 17 35944907 35948866 + MGP_CASTEiJ_P0047242 Nrm protein_coding protein_coding MGP_CASTEiJ_T0047243.1 MGP_CASTEiJ_G0022873.1 mouse_genomes_project 17 35944927 35948127 + MGP_CASTEiJ_P0047243 Nrm protein_coding protein_coding MGP_CASTEiJ_T0047244.1 MGP_CASTEiJ_G0022873.1 mouse_genomes_project 17 35945075 35948067 + MGP_CASTEiJ_P0047244 Nrm protein_coding protein_coding MGP_CASTEiJ_T0047829.1 MGP_CASTEiJ_G0023065.1 mouse_genomes_project 17 49039714 49064270 - MGP_CASTEiJ_P0047829 Mdfi protein_coding protein_coding MGP_CASTEiJ_T0047830.1 MGP_CASTEiJ_G0023065.1 mouse_genomes_project 17 49039714 49067948 - MGP_CASTEiJ_P0047830 Mdfi protein_coding protein_coding MGP_CASTEiJ_T0047831.1 MGP_CASTEiJ_G0023065.1 mouse_genomes_project 17 49039722 49064320 - MGP_CASTEiJ_P0047831 Mdfi protein_coding protein_coding MGP_CASTEiJ_T0047832.1 MGP_CASTEiJ_G0023065.1 mouse_genomes_project 17 49042693 49064287 - Mdfi protein_coding processed_transcript MGP_CASTEiJ_T0047833.1 MGP_CASTEiJ_G0023065.1 mouse_genomes_project 17 49042811 49064198 - MGP_CASTEiJ_P0047833 Mdfi protein_coding protein_coding MGP_CASTEiJ_T0047834.1 MGP_CASTEiJ_G0023065.1 mouse_genomes_project 17 49048377 49064290 - Mdfi protein_coding retained_intron MGP_CASTEiJ_T0047835.1 MGP_CASTEiJ_G0023065.1 mouse_genomes_project 17 49049420 49064301 - MGP_CASTEiJ_P0047835 Mdfi protein_coding protein_coding MGP_CASTEiJ_T0047836.1 MGP_CASTEiJ_G0023065.1 mouse_genomes_project 17 49049509 49064274 - MGP_CASTEiJ_P0047836 Mdfi protein_coding protein_coding MGP_CASTEiJ_T0047837.1 MGP_CASTEiJ_G0023065.1 mouse_genomes_project 17 49053707 49064259 - MGP_CASTEiJ_P0047837 Mdfi protein_coding protein_coding MGP_CASTEiJ_T0045570.1 MGP_CASTEiJ_G0022482.1 mouse_genomes_project 17 21206562 21218775 + MGP_CASTEiJ_P0045570 Gm5493 protein_coding protein_coding MGP_CASTEiJ_T0098537.1 MGP_CASTEiJ_G0035468.1 mouse_genomes_project 17 30439981 30440109 + Gm25447 rRNA rRNA MGP_CASTEiJ_T0047021.1 MGP_CASTEiJ_G0022828.1 mouse_genomes_project 17 34823092 34825212 + Lsm2 protein_coding retained_intron MGP_CASTEiJ_T0047022.1 MGP_CASTEiJ_G0022828.1 mouse_genomes_project 17 34823110 34827122 + MGP_CASTEiJ_P0047022 Lsm2 protein_coding protein_coding MGP_CASTEiJ_T0047023.1 MGP_CASTEiJ_G0022828.1 mouse_genomes_project 17 34823141 34826902 + Lsm2 protein_coding processed_transcript MGP_CASTEiJ_T0047024.1 MGP_CASTEiJ_G0022828.1 mouse_genomes_project 17 34823351 34826823 + Lsm2 protein_coding processed_transcript MGP_CASTEiJ_T0047025.1 MGP_CASTEiJ_G0022828.1 mouse_genomes_project 17 34823359 34827122 + MGP_CASTEiJ_P0047025 Lsm2 protein_coding protein_coding MGP_CASTEiJ_T0047026.1 MGP_CASTEiJ_G0022828.1 mouse_genomes_project 17 34823389 34827120 + Lsm2 protein_coding processed_transcript MGP_CASTEiJ_T0047027.1 MGP_CASTEiJ_G0022828.1 mouse_genomes_project 17 34823389 34827065 + Lsm2 protein_coding processed_transcript MGP_CASTEiJ_T0047028.1 MGP_CASTEiJ_G0022828.1 mouse_genomes_project 17 34823389 34827120 + MGP_CASTEiJ_P0047028 Lsm2 protein_coding protein_coding MGP_CASTEiJ_T0047029.1 MGP_CASTEiJ_G0022828.1 mouse_genomes_project 17 34823399 34826728 + Lsm2 protein_coding retained_intron MGP_CASTEiJ_T0047030.1 MGP_CASTEiJ_G0022828.1 mouse_genomes_project 17 34823439 34826728 + Lsm2 protein_coding retained_intron MGP_CASTEiJ_T0047031.1 MGP_CASTEiJ_G0022828.1 mouse_genomes_project 17 34825838 34827121 + Lsm2 protein_coding retained_intron MGP_CASTEiJ_T0006768.1 MGP_CASTEiJ_G0005588.1 mouse_genomes_project 17 35845165 35855616 + 4833427F10Rik lincRNA lincRNA MGP_CASTEiJ_T0101552.1 MGP_CASTEiJ_G0038433.1 mouse_genomes_project 17 73414427 73415033 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0012841.1 MGP_CASTEiJ_G0011004.1 mouse_genomes_project 17 20204654 20205396 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045612.1 MGP_CASTEiJ_G0022495.1 mouse_genomes_project 17 22215698 22218793 + MGP_CASTEiJ_P0045612 Cldn6 protein_coding protein_coding MGP_CASTEiJ_T0047125.1 MGP_CASTEiJ_G0022847.1 mouse_genomes_project 17 34995410 35011024 - MGP_CASTEiJ_P0047125 Prrc2a protein_coding protein_coding MGP_CASTEiJ_T0047126.1 MGP_CASTEiJ_G0022847.1 mouse_genomes_project 17 34995423 35009097 - MGP_CASTEiJ_P0047126 Prrc2a protein_coding protein_coding MGP_CASTEiJ_T0047127.1 MGP_CASTEiJ_G0022847.1 mouse_genomes_project 17 34995512 34996703 - Prrc2a protein_coding retained_intron MGP_CASTEiJ_T0047128.1 MGP_CASTEiJ_G0022847.1 mouse_genomes_project 17 34996669 34997289 - Prrc2a protein_coding retained_intron MGP_CASTEiJ_T0047129.1 MGP_CASTEiJ_G0022847.1 mouse_genomes_project 17 34998324 34999385 - Prrc2a protein_coding retained_intron MGP_CASTEiJ_T0047130.1 MGP_CASTEiJ_G0022847.1 mouse_genomes_project 17 35003260 35010962 - Prrc2a protein_coding processed_transcript MGP_CASTEiJ_T0006728.1 MGP_CASTEiJ_G0005557.1 mouse_genomes_project 17 22072996 22074575 + Gm26695 lincRNA lincRNA MGP_CASTEiJ_T0048185.1 MGP_CASTEiJ_G0023192.1 mouse_genomes_project 17 68656143 68778509 - MGP_CASTEiJ_P0048185 Mtcl1 protein_coding protein_coding MGP_CASTEiJ_T0048186.1 MGP_CASTEiJ_G0023192.1 mouse_genomes_project 17 68656147 68778509 - MGP_CASTEiJ_P0048186 Mtcl1 protein_coding protein_coding MGP_CASTEiJ_T0048187.1 MGP_CASTEiJ_G0023192.1 mouse_genomes_project 17 68656149 68708263 - MGP_CASTEiJ_P0048187 Mtcl1 protein_coding protein_coding MGP_CASTEiJ_T0048188.1 MGP_CASTEiJ_G0023192.1 mouse_genomes_project 17 68656840 68764650 - MGP_CASTEiJ_P0048188 Mtcl1 protein_coding protein_coding MGP_CASTEiJ_T0048189.1 MGP_CASTEiJ_G0023192.1 mouse_genomes_project 17 68663067 68665646 - Mtcl1 protein_coding retained_intron MGP_CASTEiJ_T0048190.1 MGP_CASTEiJ_G0023192.1 mouse_genomes_project 17 68667075 68700169 - Mtcl1 protein_coding retained_intron MGP_CASTEiJ_T0048191.1 MGP_CASTEiJ_G0023192.1 mouse_genomes_project 17 68673350 68683383 - Mtcl1 protein_coding processed_transcript MGP_CASTEiJ_T0048192.1 MGP_CASTEiJ_G0023192.1 mouse_genomes_project 17 68673515 68699683 - Mtcl1 protein_coding processed_transcript MGP_CASTEiJ_T0048193.1 MGP_CASTEiJ_G0023192.1 mouse_genomes_project 17 68677190 68699298 - Mtcl1 protein_coding retained_intron MGP_CASTEiJ_T0048194.1 MGP_CASTEiJ_G0023192.1 mouse_genomes_project 17 68686939 68695899 - Mtcl1 protein_coding processed_transcript MGP_CASTEiJ_T0048195.1 MGP_CASTEiJ_G0023192.1 mouse_genomes_project 17 68708100 68777128 - Mtcl1 protein_coding retained_intron MGP_CASTEiJ_T0046244.1 MGP_CASTEiJ_G0022654.1 mouse_genomes_project 17 26855819 26899469 + MGP_CASTEiJ_P0046244 Uhrf1bp1 protein_coding protein_coding MGP_CASTEiJ_T0046245.1 MGP_CASTEiJ_G0022654.1 mouse_genomes_project 17 26856572 26878964 + Uhrf1bp1 protein_coding processed_transcript MGP_CASTEiJ_T0046246.1 MGP_CASTEiJ_G0022654.1 mouse_genomes_project 17 26889299 26894725 + Uhrf1bp1 protein_coding processed_transcript MGP_CASTEiJ_T0102114.1 MGP_CASTEiJ_G0038839.1 mouse_genomes_project 17 16565697 16565824 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0009930.1 MGP_CASTEiJ_G0008118.1 mouse_genomes_project 17 34669267 34669334 - Mir6970 miRNA miRNA MGP_CASTEiJ_T0045349.1 MGP_CASTEiJ_G0022389.1 mouse_genomes_project 17 9843851 9934275 - MGP_CASTEiJ_P0045349 Map3k4 protein_coding protein_coding MGP_CASTEiJ_T0047592.1 MGP_CASTEiJ_G0023002.1 mouse_genomes_project 17 46636908 46638010 - MGP_CASTEiJ_P0047592 Gm7325 protein_coding protein_coding MGP_CASTEiJ_T0047593.1 MGP_CASTEiJ_G0023002.1 mouse_genomes_project 17 46636908 46638045 - MGP_CASTEiJ_P0047593 Gm7325 protein_coding protein_coding MGP_CASTEiJ_T0047594.1 MGP_CASTEiJ_G0023002.1 mouse_genomes_project 17 46636908 46637857 - MGP_CASTEiJ_P0047594 Gm7325 protein_coding protein_coding MGP_CASTEiJ_T0099525.1 MGP_CASTEiJ_G0036438.1 mouse_genomes_project 17 29516306 29516379 + Gm25049 snRNA snRNA MGP_CASTEiJ_T0045499.1 MGP_CASTEiJ_G0022434.1 mouse_genomes_project 17 15806458 15807430 + MGP_CASTEiJ_P0045499 Fpr-rs4 protein_coding protein_coding MGP_CASTEiJ_T0102124.1 MGP_CASTEiJ_G0038849.1 mouse_genomes_project 17 18927569 18928507 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100774.1 MGP_CASTEiJ_G0037687.1 mouse_genomes_project 17 74232562 74232640 + Snord53 snoRNA snoRNA MGP_CASTEiJ_T0016798.1 MGP_CASTEiJ_G0014650.1 mouse_genomes_project 17 11290253 11297869 - Gm16046 processed_transcript processed_transcript MGP_CASTEiJ_T0016799.1 MGP_CASTEiJ_G0014650.1 mouse_genomes_project 17 11294116 11297859 - Gm16046 processed_transcript processed_transcript MGP_CASTEiJ_T0016800.1 MGP_CASTEiJ_G0014650.1 mouse_genomes_project 17 11294616 11297888 - Gm16046 processed_transcript processed_transcript MGP_CASTEiJ_T0011105.1 MGP_CASTEiJ_G0009293.1 mouse_genomes_project 17 83358793 83359040 - Gm25706 misc_RNA misc_RNA MGP_CASTEiJ_T0098356.1 MGP_CASTEiJ_G0035287.1 mouse_genomes_project 17 83933283 83933675 + pseudogene pseudogene MGP_CASTEiJ_T0048216.1 MGP_CASTEiJ_G0023201.1 mouse_genomes_project 17 71630351 71771617 + MGP_CASTEiJ_P0048216 Epb41l3 protein_coding protein_coding MGP_CASTEiJ_T0048217.1 MGP_CASTEiJ_G0023201.1 mouse_genomes_project 17 71630351 71771617 + MGP_CASTEiJ_P0048217 Epb41l3 protein_coding protein_coding MGP_CASTEiJ_T0048218.1 MGP_CASTEiJ_G0023201.1 mouse_genomes_project 17 71677332 71765152 + MGP_CASTEiJ_P0048218 Epb41l3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048219.1 MGP_CASTEiJ_G0023201.1 mouse_genomes_project 17 71685112 71771623 + MGP_CASTEiJ_P0048219 Epb41l3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003635.1 MGP_CASTEiJ_G0003280.1 mouse_genomes_project 17 35717825 35728230 + Gm20483 antisense antisense MGP_CASTEiJ_T0006816.1 MGP_CASTEiJ_G0005621.1 mouse_genomes_project 17 91870815 91885542 - Gm26612 lincRNA lincRNA MGP_CASTEiJ_T0048151.1 MGP_CASTEiJ_G0023185.1 mouse_genomes_project 17 68048013 68072205 + MGP_CASTEiJ_P0048151 Ppp4r1 protein_coding protein_coding MGP_CASTEiJ_T0048152.1 MGP_CASTEiJ_G0023185.1 mouse_genomes_project 17 68048220 68081922 + MGP_CASTEiJ_P0048152 Ppp4r1 protein_coding protein_coding MGP_CASTEiJ_T0048153.1 MGP_CASTEiJ_G0023185.1 mouse_genomes_project 17 68048812 68110448 + MGP_CASTEiJ_P0048153 Ppp4r1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048154.1 MGP_CASTEiJ_G0023185.1 mouse_genomes_project 17 68068330 68079047 + Ppp4r1 protein_coding processed_transcript MGP_CASTEiJ_T0048155.1 MGP_CASTEiJ_G0023185.1 mouse_genomes_project 17 68071028 68079020 + Ppp4r1 protein_coding retained_intron MGP_CASTEiJ_T0048156.1 MGP_CASTEiJ_G0023185.1 mouse_genomes_project 17 68071407 68111172 + MGP_CASTEiJ_P0048156 Ppp4r1 protein_coding protein_coding MGP_CASTEiJ_T0048157.1 MGP_CASTEiJ_G0023185.1 mouse_genomes_project 17 68071408 68111168 + MGP_CASTEiJ_P0048157 Ppp4r1 protein_coding protein_coding MGP_CASTEiJ_T0048158.1 MGP_CASTEiJ_G0023185.1 mouse_genomes_project 17 68071452 68111167 + MGP_CASTEiJ_P0048158 Ppp4r1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048159.1 MGP_CASTEiJ_G0023185.1 mouse_genomes_project 17 68071503 68082148 + MGP_CASTEiJ_P0048159 Ppp4r1 protein_coding protein_coding MGP_CASTEiJ_T0048160.1 MGP_CASTEiJ_G0023185.1 mouse_genomes_project 17 68085460 68100475 + Ppp4r1 protein_coding processed_transcript MGP_CASTEiJ_T0048161.1 MGP_CASTEiJ_G0023185.1 mouse_genomes_project 17 68089577 68111102 + Ppp4r1 protein_coding processed_transcript MGP_CASTEiJ_T0048162.1 MGP_CASTEiJ_G0023185.1 mouse_genomes_project 17 68093974 68102566 + MGP_CASTEiJ_P0048162 Ppp4r1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048163.1 MGP_CASTEiJ_G0023185.1 mouse_genomes_project 17 68098394 68102502 + Ppp4r1 protein_coding retained_intron MGP_CASTEiJ_T0048164.1 MGP_CASTEiJ_G0023185.1 mouse_genomes_project 17 68107119 68108224 + MGP_CASTEiJ_P0048164 Ppp4r1 protein_coding protein_coding MGP_CASTEiJ_T0102157.1 MGP_CASTEiJ_G0038882.1 mouse_genomes_project 17 36304547 36307699 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0047709.1 MGP_CASTEiJ_G0023029.1 mouse_genomes_project 17 47729321 47749928 - MGP_CASTEiJ_P0047709 Klc4 protein_coding protein_coding MGP_CASTEiJ_T0046858.1 MGP_CASTEiJ_G0022794.1 mouse_genomes_project 17 33956158 33961973 - MGP_CASTEiJ_P0046858 H2-Aa protein_coding protein_coding MGP_CASTEiJ_T0046859.1 MGP_CASTEiJ_G0022794.1 mouse_genomes_project 17 33956179 33961937 - MGP_CASTEiJ_P0046859 H2-Aa protein_coding protein_coding MGP_CASTEiJ_T0046860.1 MGP_CASTEiJ_G0022794.1 mouse_genomes_project 17 33957185 33961923 - H2-Aa protein_coding retained_intron MGP_CASTEiJ_T0046861.1 MGP_CASTEiJ_G0022794.1 mouse_genomes_project 17 33960611 33961965 - H2-Aa protein_coding processed_transcript MGP_CASTEiJ_T0045331.1 MGP_CASTEiJ_G0022385.1 mouse_genomes_project 17 7737804 7856412 - MGP_CASTEiJ_P0045331 Qk protein_coding protein_coding MGP_CASTEiJ_T0009939.1 MGP_CASTEiJ_G0008127.1 mouse_genomes_project 17 47331461 47331550 + Mir693 miRNA miRNA MGP_CASTEiJ_T0045441.1 MGP_CASTEiJ_G0022419.1 mouse_genomes_project 17 13155111 13172605 + MGP_CASTEiJ_P0045441 Tbp protein_coding protein_coding MGP_CASTEiJ_T0045442.1 MGP_CASTEiJ_G0022419.1 mouse_genomes_project 17 13155111 13183994 + MGP_CASTEiJ_P0045442 Tbp protein_coding protein_coding MGP_CASTEiJ_T0045443.1 MGP_CASTEiJ_G0022419.1 mouse_genomes_project 17 13155111 13159851 + MGP_CASTEiJ_P0045443 Tbp protein_coding protein_coding MGP_CASTEiJ_T0045444.1 MGP_CASTEiJ_G0022419.1 mouse_genomes_project 17 13155124 13162708 + MGP_CASTEiJ_P0045444 Tbp protein_coding protein_coding MGP_CASTEiJ_T0045445.1 MGP_CASTEiJ_G0022419.1 mouse_genomes_project 17 13155133 13172605 + MGP_CASTEiJ_P0045445 Tbp protein_coding protein_coding MGP_CASTEiJ_T0045446.1 MGP_CASTEiJ_G0022419.1 mouse_genomes_project 17 13155135 13162613 + MGP_CASTEiJ_P0045446 Tbp protein_coding protein_coding MGP_CASTEiJ_T0045447.1 MGP_CASTEiJ_G0022419.1 mouse_genomes_project 17 13155145 13169749 + MGP_CASTEiJ_P0045447 Tbp protein_coding protein_coding MGP_CASTEiJ_T0045448.1 MGP_CASTEiJ_G0022419.1 mouse_genomes_project 17 13155151 13159693 + MGP_CASTEiJ_P0045448 Tbp protein_coding protein_coding MGP_CASTEiJ_T0045449.1 MGP_CASTEiJ_G0022419.1 mouse_genomes_project 17 13155183 13172605 + MGP_CASTEiJ_P0045449 Tbp protein_coding protein_coding MGP_CASTEiJ_T0045450.1 MGP_CASTEiJ_G0022419.1 mouse_genomes_project 17 13159828 13172045 + MGP_CASTEiJ_P0045450 Tbp protein_coding protein_coding MGP_CASTEiJ_T0045451.1 MGP_CASTEiJ_G0022419.1 mouse_genomes_project 17 13170859 13172112 + Tbp protein_coding retained_intron MGP_CASTEiJ_T0046624.1 MGP_CASTEiJ_G0022742.1 mouse_genomes_project 17 32539456 32563810 - MGP_CASTEiJ_P0046624 Cyp4f13 protein_coding protein_coding MGP_CASTEiJ_T0046625.1 MGP_CASTEiJ_G0022742.1 mouse_genomes_project 17 32539469 32563787 - MGP_CASTEiJ_P0046625 Cyp4f13 protein_coding protein_coding MGP_CASTEiJ_T0046626.1 MGP_CASTEiJ_G0022742.1 mouse_genomes_project 17 32539484 32563774 - MGP_CASTEiJ_P0046626 Cyp4f13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046627.1 MGP_CASTEiJ_G0022742.1 mouse_genomes_project 17 32540093 32540647 - Cyp4f13 protein_coding retained_intron MGP_CASTEiJ_T0046628.1 MGP_CASTEiJ_G0022742.1 mouse_genomes_project 17 32548567 32563810 - MGP_CASTEiJ_P0046628 Cyp4f13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046629.1 MGP_CASTEiJ_G0022742.1 mouse_genomes_project 17 32548779 32563768 - MGP_CASTEiJ_P0046629 Cyp4f13 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046630.1 MGP_CASTEiJ_G0022742.1 mouse_genomes_project 17 32556241 32563799 - Cyp4f13 protein_coding retained_intron MGP_CASTEiJ_T0048183.1 MGP_CASTEiJ_G0023191.1 mouse_genomes_project 17 68420573 68455017 + MGP_CASTEiJ_P0048183 Ddx11 protein_coding protein_coding MGP_CASTEiJ_T0048184.1 MGP_CASTEiJ_G0023191.1 mouse_genomes_project 17 68420729 68453764 + MGP_CASTEiJ_P0048184 Ddx11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0046845.1 MGP_CASTEiJ_G0022790.1 mouse_genomes_project 17 33884436 33897217 + MGP_CASTEiJ_P0046845 Tap2 protein_coding protein_coding MGP_CASTEiJ_T0046846.1 MGP_CASTEiJ_G0022790.1 mouse_genomes_project 17 33884989 33886253 + MGP_CASTEiJ_P0046846 Tap2 protein_coding protein_coding MGP_CASTEiJ_T0046847.1 MGP_CASTEiJ_G0022790.1 mouse_genomes_project 17 33885451 33897214 + Tap2 protein_coding retained_intron MGP_CASTEiJ_T0046848.1 MGP_CASTEiJ_G0022790.1 mouse_genomes_project 17 33885984 33886452 + MGP_CASTEiJ_P0046848 Tap2 protein_coding protein_coding MGP_CASTEiJ_T0046849.1 MGP_CASTEiJ_G0022790.1 mouse_genomes_project 17 33888584 33890104 + Tap2 protein_coding processed_transcript MGP_CASTEiJ_T0006807.1 MGP_CASTEiJ_G0005615.1 mouse_genomes_project 17 87179679 87182409 - C430042M11Rik lincRNA lincRNA MGP_CASTEiJ_T0047319.1 MGP_CASTEiJ_G0022884.1 mouse_genomes_project 17 36132161 36134662 - MGP_CASTEiJ_P0047319 H2-T23 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047320.1 MGP_CASTEiJ_G0022884.1 mouse_genomes_project 17 36133755 36134723 - H2-T23 protein_coding retained_intron MGP_CASTEiJ_T0012912.1 MGP_CASTEiJ_G0011075.1 mouse_genomes_project 17 94416704 94417039 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048444.1 MGP_CASTEiJ_G0023276.1 mouse_genomes_project 17 86621059 86757487 + MGP_CASTEiJ_P0048444 Eml4 protein_coding protein_coding MGP_CASTEiJ_T0048445.1 MGP_CASTEiJ_G0023276.1 mouse_genomes_project 17 86621059 86757487 + MGP_CASTEiJ_P0048445 Eml4 protein_coding protein_coding MGP_CASTEiJ_T0048446.1 MGP_CASTEiJ_G0023276.1 mouse_genomes_project 17 86621059 86757487 + MGP_CASTEiJ_P0048446 Eml4 protein_coding protein_coding MGP_CASTEiJ_T0016802.1 MGP_CASTEiJ_G0014652.1 mouse_genomes_project 17 18719817 18720843 + Vmn1r227 processed_transcript pseudogene MGP_CASTEiJ_T0003668.1 MGP_CASTEiJ_G0003306.1 mouse_genomes_project 17 90994501 90996757 - 0610012D04Rik antisense antisense MGP_CASTEiJ_T0045514.1 MGP_CASTEiJ_G0022449.1 mouse_genomes_project 17 18449083 18613620 - MGP_CASTEiJ_P0045514 Vmn2r110 protein_coding protein_coding MGP_CASTEiJ_T0048205.1 MGP_CASTEiJ_G0023197.1 mouse_genomes_project 17 70079842 70218779 + MGP_CASTEiJ_P0048205 Lama1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048206.1 MGP_CASTEiJ_G0023197.1 mouse_genomes_project 17 70079858 70216044 + MGP_CASTEiJ_P0048206 Lama1 protein_coding protein_coding MGP_CASTEiJ_T0045266.1 MGP_CASTEiJ_G0022363.1 mouse_genomes_project 17 4047592 4088980 + MGP_CASTEiJ_P0045266 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045267.1 MGP_CASTEiJ_G0022363.1 mouse_genomes_project 17 4053806 4085422 + protein_coding retained_intron MGP_CASTEiJ_T0045268.1 MGP_CASTEiJ_G0022363.1 mouse_genomes_project 17 4079459 4089196 + MGP_CASTEiJ_P0045268 protein_coding unknown_likely_coding MGP_CASTEiJ_T0046570.1 MGP_CASTEiJ_G0022727.1 mouse_genomes_project 17 31829510 31844618 - MGP_CASTEiJ_P0046570 Akap8l protein_coding unknown_likely_coding MGP_CASTEiJ_T0046571.1 MGP_CASTEiJ_G0022727.1 mouse_genomes_project 17 31832197 31861336 - MGP_CASTEiJ_P0046571 Akap8l protein_coding protein_coding MGP_CASTEiJ_T0003592.1 MGP_CASTEiJ_G0003251.1 mouse_genomes_project 17 8654720 8661981 - Gm28505 antisense antisense MGP_CASTEiJ_T0047108.1 MGP_CASTEiJ_G0022845.1 mouse_genomes_project 17 34975522 34978569 - MGP_CASTEiJ_P0047108 Apom protein_coding protein_coding MGP_CASTEiJ_T0100767.1 MGP_CASTEiJ_G0037680.1 mouse_genomes_project 17 49991544 49991676 + Gm24071 snoRNA snoRNA MGP_CASTEiJ_T0003640.1 MGP_CASTEiJ_G0003285.1 mouse_genomes_project 17 44456585 44459759 - 1700071M16Rik antisense antisense MGP_CASTEiJ_T0003641.1 MGP_CASTEiJ_G0003285.1 mouse_genomes_project 17 44456792 44459759 - 1700071M16Rik antisense antisense MGP_CASTEiJ_T0003642.1 MGP_CASTEiJ_G0003285.1 mouse_genomes_project 17 44459417 44460690 - 1700071M16Rik antisense antisense MGP_CASTEiJ_T0003643.1 MGP_CASTEiJ_G0003285.1 mouse_genomes_project 17 44459417 44460680 - 1700071M16Rik antisense antisense MGP_CASTEiJ_T0046998.1 MGP_CASTEiJ_G0022822.1 mouse_genomes_project 17 34724371 34742549 + MGP_CASTEiJ_P0046998 Ehmt2 protein_coding protein_coding MGP_CASTEiJ_T0046999.1 MGP_CASTEiJ_G0022822.1 mouse_genomes_project 17 34724401 34742545 + MGP_CASTEiJ_P0046999 Ehmt2 protein_coding protein_coding MGP_CASTEiJ_T0047000.1 MGP_CASTEiJ_G0022822.1 mouse_genomes_project 17 34724856 34742542 + MGP_CASTEiJ_P0047000 Ehmt2 protein_coding protein_coding MGP_CASTEiJ_T0047001.1 MGP_CASTEiJ_G0022822.1 mouse_genomes_project 17 34724873 34742549 + MGP_CASTEiJ_P0047001 Ehmt2 protein_coding protein_coding MGP_CASTEiJ_T0047002.1 MGP_CASTEiJ_G0022822.1 mouse_genomes_project 17 34725596 34729407 + Ehmt2 protein_coding processed_transcript MGP_CASTEiJ_T0047003.1 MGP_CASTEiJ_G0022822.1 mouse_genomes_project 17 34731980 34733029 + Ehmt2 protein_coding retained_intron MGP_CASTEiJ_T0047004.1 MGP_CASTEiJ_G0022822.1 mouse_genomes_project 17 34732017 34732818 + Ehmt2 protein_coding retained_intron MGP_CASTEiJ_T0047005.1 MGP_CASTEiJ_G0022822.1 mouse_genomes_project 17 34732687 34733403 + Ehmt2 protein_coding retained_intron MGP_CASTEiJ_T0047006.1 MGP_CASTEiJ_G0022822.1 mouse_genomes_project 17 34732779 34735336 + MGP_CASTEiJ_P0047006 Ehmt2 protein_coding protein_coding MGP_CASTEiJ_T0047007.1 MGP_CASTEiJ_G0022822.1 mouse_genomes_project 17 34733521 34735221 + Ehmt2 protein_coding processed_transcript MGP_CASTEiJ_T0047008.1 MGP_CASTEiJ_G0022822.1 mouse_genomes_project 17 34734175 34742545 + MGP_CASTEiJ_P0047008 Ehmt2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047009.1 MGP_CASTEiJ_G0022822.1 mouse_genomes_project 17 34734177 34735580 + MGP_CASTEiJ_P0047009 Ehmt2 protein_coding protein_coding MGP_CASTEiJ_T0047010.1 MGP_CASTEiJ_G0022822.1 mouse_genomes_project 17 34735422 34738266 + Ehmt2 protein_coding retained_intron MGP_CASTEiJ_T0047011.1 MGP_CASTEiJ_G0022822.1 mouse_genomes_project 17 34737738 34742550 + Ehmt2 protein_coding retained_intron MGP_CASTEiJ_T0048464.1 MGP_CASTEiJ_G0023283.1 mouse_genomes_project 17 87915621 88030930 + MGP_CASTEiJ_P0048464 Plekhh2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048465.1 MGP_CASTEiJ_G0023283.1 mouse_genomes_project 17 87915625 88033083 + MGP_CASTEiJ_P0048465 Plekhh2 protein_coding protein_coding MGP_CASTEiJ_T0003613.1 MGP_CASTEiJ_G0003266.1 mouse_genomes_project 17 28005356 28006862 + 1700030A11Rik antisense antisense MGP_CASTEiJ_T0003610.1 MGP_CASTEiJ_G0003263.1 mouse_genomes_project 17 26961907 26966252 - Gm15597 antisense antisense MGP_CASTEiJ_T0046614.1 MGP_CASTEiJ_G0022738.1 mouse_genomes_project 17 32385878 32408354 - MGP_CASTEiJ_P0046614 Zfp811 protein_coding protein_coding MGP_CASTEiJ_T0046615.1 MGP_CASTEiJ_G0022738.1 mouse_genomes_project 17 32389074 32395657 - MGP_CASTEiJ_P0046615 Zfp811 protein_coding protein_coding MGP_CASTEiJ_T0045521.1 MGP_CASTEiJ_G0022456.1 mouse_genomes_project 17 18835966 18836917 + MGP_CASTEiJ_P0045521 Vmn1r230 protein_coding protein_coding MGP_CASTEiJ_T0045317.1 MGP_CASTEiJ_G0022381.1 mouse_genomes_project 17 5958669 6392669 + MGP_CASTEiJ_P0045317 Pde10a protein_coding protein_coding MGP_CASTEiJ_T0045318.1 MGP_CASTEiJ_G0022381.1 mouse_genomes_project 17 5959987 6454220 + MGP_CASTEiJ_P0045318 Pde10a protein_coding protein_coding MGP_CASTEiJ_T0045321.1 MGP_CASTEiJ_G0022381.1 mouse_genomes_project 17 6256912 6369916 + Pde10a protein_coding retained_intron MGP_CASTEiJ_T0045322.1 MGP_CASTEiJ_G0022381.1 mouse_genomes_project 17 6256998 6458366 + MGP_CASTEiJ_P0045322 Pde10a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045323.1 MGP_CASTEiJ_G0022381.1 mouse_genomes_project 17 6257298 6453381 + MGP_CASTEiJ_P0045323 Pde10a protein_coding protein_coding MGP_CASTEiJ_T0045324.1 MGP_CASTEiJ_G0022381.1 mouse_genomes_project 17 6314733 6454125 + MGP_CASTEiJ_P0045324 Pde10a protein_coding protein_coding MGP_CASTEiJ_T0045325.1 MGP_CASTEiJ_G0022381.1 mouse_genomes_project 17 6364019 6399797 + Pde10a protein_coding processed_transcript MGP_CASTEiJ_T0045326.1 MGP_CASTEiJ_G0022381.1 mouse_genomes_project 17 6393424 6456010 + MGP_CASTEiJ_P0045326 Pde10a protein_coding protein_coding MGP_CASTEiJ_T0000941.1 MGP_CASTEiJ_G0000878.1 mouse_genomes_project 17 8859086 8861871 - TEC TEC MGP_CASTEiJ_T0098545.1 MGP_CASTEiJ_G0035476.1 mouse_genomes_project 17 81904166 81904285 + n-R5s29 rRNA rRNA MGP_CASTEiJ_T0046913.1 MGP_CASTEiJ_G0022806.1 mouse_genomes_project 17 34382038 34384436 - MGP_CASTEiJ_P0046913 Rnf5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0046914.1 MGP_CASTEiJ_G0022806.1 mouse_genomes_project 17 34382252 34384339 - Rnf5 protein_coding retained_intron MGP_CASTEiJ_T0046915.1 MGP_CASTEiJ_G0022806.1 mouse_genomes_project 17 34382720 34384624 - Rnf5 protein_coding retained_intron MGP_CASTEiJ_T0048002.1 MGP_CASTEiJ_G0023125.1 mouse_genomes_project 17 57975177 58007293 - MGP_CASTEiJ_P0048002 Dpp9 protein_coding protein_coding MGP_CASTEiJ_T0045808.1 MGP_CASTEiJ_G0022551.1 mouse_genomes_project 17 23519270 23520676 - MGP_CASTEiJ_P0045808 Fahd1 protein_coding protein_coding MGP_CASTEiJ_T0048099.1 MGP_CASTEiJ_G0023162.1 mouse_genomes_project 17 59025374 59029142 - MGP_CASTEiJ_P0048099 Cd70 protein_coding protein_coding MGP_CASTEiJ_T0046508.1 MGP_CASTEiJ_G0022714.1 mouse_genomes_project 17 30927708 30946790 - MGP_CASTEiJ_P0046508 Wdr4 protein_coding protein_coding MGP_CASTEiJ_T0046509.1 MGP_CASTEiJ_G0022714.1 mouse_genomes_project 17 30927708 30946294 - MGP_CASTEiJ_P0046509 Wdr4 protein_coding protein_coding MGP_CASTEiJ_T0046510.1 MGP_CASTEiJ_G0022714.1 mouse_genomes_project 17 30927709 30946307 - MGP_CASTEiJ_P0046510 Wdr4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046511.1 MGP_CASTEiJ_G0022714.1 mouse_genomes_project 17 30927711 30946307 - MGP_CASTEiJ_P0046511 Wdr4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046512.1 MGP_CASTEiJ_G0022714.1 mouse_genomes_project 17 30929505 30935267 - Wdr4 protein_coding retained_intron MGP_CASTEiJ_T0046513.1 MGP_CASTEiJ_G0022714.1 mouse_genomes_project 17 30932818 30937553 - Wdr4 protein_coding retained_intron MGP_CASTEiJ_T0046514.1 MGP_CASTEiJ_G0022714.1 mouse_genomes_project 17 30937022 30943899 - Wdr4 protein_coding retained_intron MGP_CASTEiJ_T0046515.1 MGP_CASTEiJ_G0022714.1 mouse_genomes_project 17 30937510 30953984 - MGP_CASTEiJ_P0046515 Wdr4 protein_coding protein_coding MGP_CASTEiJ_T0046516.1 MGP_CASTEiJ_G0022714.1 mouse_genomes_project 17 30937520 30946317 - MGP_CASTEiJ_P0046516 Wdr4 protein_coding protein_coding MGP_CASTEiJ_T0046517.1 MGP_CASTEiJ_G0022714.1 mouse_genomes_project 17 30946481 30954044 - Wdr4 protein_coding processed_transcript MGP_CASTEiJ_T0047181.1 MGP_CASTEiJ_G0022863.1 mouse_genomes_project 17 35664716 35716565 + MGP_CASTEiJ_P0047181 Sfta2 protein_coding protein_coding MGP_CASTEiJ_T0047182.1 MGP_CASTEiJ_G0022863.1 mouse_genomes_project 17 35664745 35716563 + Sfta2 protein_coding processed_transcript MGP_CASTEiJ_T0047185.1 MGP_CASTEiJ_G0022863.1 mouse_genomes_project 17 35715705 35716569 + MGP_CASTEiJ_P0047185 Sfta2 protein_coding protein_coding MGP_CASTEiJ_T0048380.1 MGP_CASTEiJ_G0023247.1 mouse_genomes_project 17 81932789 81956626 - MGP_CASTEiJ_P0048380 Sult6b1 protein_coding protein_coding MGP_CASTEiJ_T0048381.1 MGP_CASTEiJ_G0023247.1 mouse_genomes_project 17 81933745 81943562 - Sult6b1 protein_coding processed_transcript MGP_CASTEiJ_T0048382.1 MGP_CASTEiJ_G0023247.1 mouse_genomes_project 17 81933914 81956533 - MGP_CASTEiJ_P0048382 Sult6b1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048383.1 MGP_CASTEiJ_G0023247.1 mouse_genomes_project 17 81933914 81956533 - MGP_CASTEiJ_P0048383 Sult6b1 protein_coding protein_coding MGP_CASTEiJ_T0045557.1 MGP_CASTEiJ_G0022477.1 mouse_genomes_project 17 20154468 20198938 - MGP_CASTEiJ_P0045557 protein_coding protein_coding MGP_CASTEiJ_T0048041.1 MGP_CASTEiJ_G0023134.1 mouse_genomes_project 17 58406011 58417722 + protein_coding retained_intron MGP_CASTEiJ_T0048042.1 MGP_CASTEiJ_G0023134.1 mouse_genomes_project 17 58406168 58414931 + MGP_CASTEiJ_P0048042 protein_coding protein_coding MGP_CASTEiJ_T0048043.1 MGP_CASTEiJ_G0023134.1 mouse_genomes_project 17 58406172 58427782 + MGP_CASTEiJ_P0048043 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048044.1 MGP_CASTEiJ_G0023134.1 mouse_genomes_project 17 58406347 58417005 + MGP_CASTEiJ_P0048044 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048045.1 MGP_CASTEiJ_G0023134.1 mouse_genomes_project 17 58410030 58422811 + MGP_CASTEiJ_P0048045 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048046.1 MGP_CASTEiJ_G0023134.1 mouse_genomes_project 17 58415686 58417710 + protein_coding retained_intron MGP_CASTEiJ_T0048047.1 MGP_CASTEiJ_G0023134.1 mouse_genomes_project 17 58418968 58427771 + protein_coding retained_intron MGP_CASTEiJ_T0048048.1 MGP_CASTEiJ_G0023134.1 mouse_genomes_project 17 58419858 58427601 + MGP_CASTEiJ_P0048048 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048049.1 MGP_CASTEiJ_G0023134.1 mouse_genomes_project 17 58422967 58425911 + protein_coding retained_intron MGP_CASTEiJ_T0048050.1 MGP_CASTEiJ_G0023134.1 mouse_genomes_project 17 58424481 58426060 + protein_coding retained_intron MGP_CASTEiJ_T0048051.1 MGP_CASTEiJ_G0023134.1 mouse_genomes_project 17 58425861 58427168 + protein_coding retained_intron MGP_CASTEiJ_T0048052.1 MGP_CASTEiJ_G0023134.1 mouse_genomes_project 17 58426742 58427785 + protein_coding retained_intron MGP_CASTEiJ_T0048053.1 MGP_CASTEiJ_G0023134.1 mouse_genomes_project 17 58427254 58427765 + protein_coding retained_intron MGP_CASTEiJ_T0006769.1 MGP_CASTEiJ_G0005589.1 mouse_genomes_project 17 36098616 36100508 + Gm20508 lincRNA lincRNA MGP_CASTEiJ_T0006771.1 MGP_CASTEiJ_G0005591.1 mouse_genomes_project 17 37451560 37481511 - lincRNA lincRNA MGP_CASTEiJ_T0045671.1 MGP_CASTEiJ_G0022516.1 mouse_genomes_project 17 22748544 22756473 - Amdhd2 protein_coding retained_intron MGP_CASTEiJ_T0045672.1 MGP_CASTEiJ_G0022516.1 mouse_genomes_project 17 22748544 22749452 - Amdhd2 protein_coding processed_transcript MGP_CASTEiJ_T0045673.1 MGP_CASTEiJ_G0022516.1 mouse_genomes_project 17 22748544 22756509 - MGP_CASTEiJ_P0045673 Amdhd2 protein_coding protein_coding MGP_CASTEiJ_T0045674.1 MGP_CASTEiJ_G0022516.1 mouse_genomes_project 17 22748546 22750305 - MGP_CASTEiJ_P0045674 Amdhd2 protein_coding protein_coding MGP_CASTEiJ_T0045675.1 MGP_CASTEiJ_G0022516.1 mouse_genomes_project 17 22751054 22756053 - MGP_CASTEiJ_P0045675 Amdhd2 protein_coding protein_coding MGP_CASTEiJ_T0045676.1 MGP_CASTEiJ_G0022516.1 mouse_genomes_project 17 22754943 22756436 - Amdhd2 protein_coding retained_intron MGP_CASTEiJ_T0047490.1 MGP_CASTEiJ_G0022971.1 mouse_genomes_project 17 41652414 41665020 - MGP_CASTEiJ_P0047490 Cenpq protein_coding protein_coding MGP_CASTEiJ_T0047491.1 MGP_CASTEiJ_G0022971.1 mouse_genomes_project 17 41655179 41656496 - Cenpq protein_coding processed_transcript MGP_CASTEiJ_T0047865.1 MGP_CASTEiJ_G0023076.1 mouse_genomes_project 17 49696345 49701846 + MGP_CASTEiJ_P0047865 Trem2 protein_coding protein_coding MGP_CASTEiJ_T0047866.1 MGP_CASTEiJ_G0023076.1 mouse_genomes_project 17 49696384 49703692 + Trem2 protein_coding retained_intron MGP_CASTEiJ_T0047867.1 MGP_CASTEiJ_G0023076.1 mouse_genomes_project 17 49696432 49701846 + MGP_CASTEiJ_P0047867 Trem2 protein_coding protein_coding MGP_CASTEiJ_T0047868.1 MGP_CASTEiJ_G0023076.1 mouse_genomes_project 17 49696433 49700126 + Trem2 protein_coding processed_transcript MGP_CASTEiJ_T0048473.1 MGP_CASTEiJ_G0023287.1 mouse_genomes_project 17 88133040 88223558 - MGP_CASTEiJ_P0048473 Lrpprc protein_coding protein_coding MGP_CASTEiJ_T0048474.1 MGP_CASTEiJ_G0023287.1 mouse_genomes_project 17 88140574 88158969 - Lrpprc protein_coding processed_transcript MGP_CASTEiJ_T0048475.1 MGP_CASTEiJ_G0023287.1 mouse_genomes_project 17 88158964 88179161 - MGP_CASTEiJ_P0048475 Lrpprc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048476.1 MGP_CASTEiJ_G0023287.1 mouse_genomes_project 17 88176651 88179161 - Lrpprc protein_coding retained_intron MGP_CASTEiJ_T0048477.1 MGP_CASTEiJ_G0023287.1 mouse_genomes_project 17 88198169 88223789 - Lrpprc protein_coding retained_intron MGP_CASTEiJ_T0048478.1 MGP_CASTEiJ_G0023287.1 mouse_genomes_project 17 88199334 88223562 - Lrpprc protein_coding retained_intron MGP_CASTEiJ_T0048479.1 MGP_CASTEiJ_G0023287.1 mouse_genomes_project 17 88202122 88210517 - Lrpprc protein_coding processed_transcript MGP_CASTEiJ_T0048374.1 MGP_CASTEiJ_G0023245.1 mouse_genomes_project 17 81895526 81896289 - protein_coding retained_intron MGP_CASTEiJ_T0048375.1 MGP_CASTEiJ_G0023245.1 mouse_genomes_project 17 81895701 81896163 - protein_coding processed_transcript MGP_CASTEiJ_T0046881.1 MGP_CASTEiJ_G0022802.1 mouse_genomes_project 17 34341589 34369496 + MGP_CASTEiJ_P0046881 Notch4 protein_coding protein_coding MGP_CASTEiJ_T0046882.1 MGP_CASTEiJ_G0022802.1 mouse_genomes_project 17 34341619 34342925 + Notch4 protein_coding processed_transcript MGP_CASTEiJ_T0046883.1 MGP_CASTEiJ_G0022802.1 mouse_genomes_project 17 34341658 34369225 + MGP_CASTEiJ_P0046883 Notch4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046884.1 MGP_CASTEiJ_G0022802.1 mouse_genomes_project 17 34342444 34342886 + Notch4 protein_coding retained_intron MGP_CASTEiJ_T0046885.1 MGP_CASTEiJ_G0022802.1 mouse_genomes_project 17 34356973 34361375 + Notch4 protein_coding processed_transcript MGP_CASTEiJ_T0046886.1 MGP_CASTEiJ_G0022802.1 mouse_genomes_project 17 34362779 34367616 + MGP_CASTEiJ_P0046886 Notch4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046887.1 MGP_CASTEiJ_G0022802.1 mouse_genomes_project 17 34362779 34367668 + MGP_CASTEiJ_P0046887 Notch4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046888.1 MGP_CASTEiJ_G0022802.1 mouse_genomes_project 17 34363465 34366647 + Notch4 protein_coding retained_intron MGP_CASTEiJ_T0046889.1 MGP_CASTEiJ_G0022802.1 mouse_genomes_project 17 34366659 34367617 + Notch4 protein_coding retained_intron MGP_CASTEiJ_T0046890.1 MGP_CASTEiJ_G0022802.1 mouse_genomes_project 17 34367269 34368467 + Notch4 protein_coding retained_intron MGP_CASTEiJ_T0046891.1 MGP_CASTEiJ_G0022802.1 mouse_genomes_project 17 34367938 34368495 + Notch4 protein_coding processed_transcript MGP_CASTEiJ_T0046892.1 MGP_CASTEiJ_G0022802.1 mouse_genomes_project 17 34368034 34368812 + Notch4 protein_coding processed_transcript MGP_CASTEiJ_T0048480.1 MGP_CASTEiJ_G0023288.1 mouse_genomes_project 17 88400979 88472565 + MGP_CASTEiJ_P0048480 Ppm1b protein_coding protein_coding MGP_CASTEiJ_T0048481.1 MGP_CASTEiJ_G0023288.1 mouse_genomes_project 17 88402239 88461169 + MGP_CASTEiJ_P0048481 Ppm1b protein_coding protein_coding MGP_CASTEiJ_T0048482.1 MGP_CASTEiJ_G0023288.1 mouse_genomes_project 17 88402239 88465721 + MGP_CASTEiJ_P0048482 Ppm1b protein_coding protein_coding MGP_CASTEiJ_T0048483.1 MGP_CASTEiJ_G0023288.1 mouse_genomes_project 17 88439828 88472565 + MGP_CASTEiJ_P0048483 Ppm1b protein_coding protein_coding MGP_CASTEiJ_T0102178.1 MGP_CASTEiJ_G0038903.1 mouse_genomes_project 17 37677935 37678306 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045580.1 MGP_CASTEiJ_G0022485.1 mouse_genomes_project 17 21871659 21893454 + MGP_CASTEiJ_P0045580 protein_coding protein_coding MGP_CASTEiJ_T0046650.1 MGP_CASTEiJ_G0022755.1 mouse_genomes_project 17 32993864 33011996 - MGP_CASTEiJ_P0046650 Zfp101 protein_coding protein_coding MGP_CASTEiJ_T0046651.1 MGP_CASTEiJ_G0022755.1 mouse_genomes_project 17 32995964 33011712 - MGP_CASTEiJ_P0046651 Zfp101 protein_coding protein_coding MGP_CASTEiJ_T0046652.1 MGP_CASTEiJ_G0022755.1 mouse_genomes_project 17 32996677 33011978 - MGP_CASTEiJ_P0046652 Zfp101 protein_coding protein_coding MGP_CASTEiJ_T0046653.1 MGP_CASTEiJ_G0022755.1 mouse_genomes_project 17 33002048 33011960 - Zfp101 protein_coding processed_transcript MGP_CASTEiJ_T0012862.1 MGP_CASTEiJ_G0011025.1 mouse_genomes_project 17 36615284 36616277 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046080.1 MGP_CASTEiJ_G0022613.1 mouse_genomes_project 17 24753409 24786515 - MGP_CASTEiJ_P0046080 Rab11fip3 protein_coding protein_coding MGP_CASTEiJ_T0046081.1 MGP_CASTEiJ_G0022613.1 mouse_genomes_project 17 24753409 24843558 - MGP_CASTEiJ_P0046081 Rab11fip3 protein_coding protein_coding MGP_CASTEiJ_T0046082.1 MGP_CASTEiJ_G0022613.1 mouse_genomes_project 17 24753418 24843790 - MGP_CASTEiJ_P0046082 Rab11fip3 protein_coding protein_coding MGP_CASTEiJ_T0046083.1 MGP_CASTEiJ_G0022613.1 mouse_genomes_project 17 24768556 24786473 - Rab11fip3 protein_coding retained_intron MGP_CASTEiJ_T0046084.1 MGP_CASTEiJ_G0022613.1 mouse_genomes_project 17 24778513 24783136 - MGP_CASTEiJ_P0046084 Rab11fip3 protein_coding protein_coding MGP_CASTEiJ_T0046085.1 MGP_CASTEiJ_G0022613.1 mouse_genomes_project 17 24808442 24843616 - Rab11fip3 protein_coding processed_transcript MGP_CASTEiJ_T0011096.1 MGP_CASTEiJ_G0009284.1 mouse_genomes_project 17 37279492 37279740 + Gm22388 misc_RNA misc_RNA MGP_CASTEiJ_T0100760.1 MGP_CASTEiJ_G0037673.1 mouse_genomes_project 17 29173573 29173681 - Gm22327 snoRNA snoRNA MGP_CASTEiJ_T0047518.1 MGP_CASTEiJ_G0022984.1 mouse_genomes_project 17 44485041 44500025 - MGP_CASTEiJ_P0047518 Tdrd6 protein_coding protein_coding MGP_CASTEiJ_T0047519.1 MGP_CASTEiJ_G0022984.1 mouse_genomes_project 17 44485045 44500025 - MGP_CASTEiJ_P0047519 Tdrd6 protein_coding protein_coding MGP_CASTEiJ_T0047520.1 MGP_CASTEiJ_G0022984.1 mouse_genomes_project 17 44485265 44490236 - Tdrd6 protein_coding processed_transcript MGP_CASTEiJ_T0047521.1 MGP_CASTEiJ_G0022984.1 mouse_genomes_project 17 44485551 44499907 - MGP_CASTEiJ_P0047521 Tdrd6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0102128.1 MGP_CASTEiJ_G0038853.1 mouse_genomes_project 17 19368730 19369186 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0098540.1 MGP_CASTEiJ_G0035471.1 mouse_genomes_project 17 48452701 48452774 + Gm26216 rRNA rRNA MGP_CASTEiJ_T0046098.1 MGP_CASTEiJ_G0022618.1 mouse_genomes_project 17 24930894 24998081 + MGP_CASTEiJ_P0046098 Axin1 protein_coding protein_coding MGP_CASTEiJ_T0046099.1 MGP_CASTEiJ_G0022618.1 mouse_genomes_project 17 24931034 24997511 + MGP_CASTEiJ_P0046099 Axin1 protein_coding protein_coding MGP_CASTEiJ_T0046100.1 MGP_CASTEiJ_G0022618.1 mouse_genomes_project 17 24931156 24997564 + MGP_CASTEiJ_P0046100 Axin1 protein_coding protein_coding MGP_CASTEiJ_T0046101.1 MGP_CASTEiJ_G0022618.1 mouse_genomes_project 17 24935563 24986603 + MGP_CASTEiJ_P0046101 Axin1 protein_coding protein_coding MGP_CASTEiJ_T0046102.1 MGP_CASTEiJ_G0022618.1 mouse_genomes_project 17 24990450 24991093 + Axin1 protein_coding retained_intron MGP_CASTEiJ_T0012911.1 MGP_CASTEiJ_G0011074.1 mouse_genomes_project 17 92642324 92642656 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099529.1 MGP_CASTEiJ_G0036442.1 mouse_genomes_project 17 33572355 33572460 + Gm23111 snRNA snRNA MGP_CASTEiJ_T0048066.1 MGP_CASTEiJ_G0023144.1 mouse_genomes_project 17 58602889 58604849 + Prr22 protein_coding retained_intron MGP_CASTEiJ_T0048067.1 MGP_CASTEiJ_G0023144.1 mouse_genomes_project 17 58602915 58604773 + MGP_CASTEiJ_P0048067 Prr22 protein_coding protein_coding MGP_CASTEiJ_T0102173.1 MGP_CASTEiJ_G0038898.1 mouse_genomes_project 17 37430702 37431549 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045416.1 MGP_CASTEiJ_G0022409.1 mouse_genomes_project 17 12341571 12371694 - MGP_CASTEiJ_P0045416 Thbs2 protein_coding protein_coding MGP_CASTEiJ_T0045940.1 MGP_CASTEiJ_G0022581.1 mouse_genomes_project 17 24087706 24147389 - MGP_CASTEiJ_P0045940 Cacna1h protein_coding protein_coding MGP_CASTEiJ_T0045941.1 MGP_CASTEiJ_G0022581.1 mouse_genomes_project 17 24087707 24147666 - MGP_CASTEiJ_P0045941 Cacna1h protein_coding unknown_likely_coding MGP_CASTEiJ_T0045942.1 MGP_CASTEiJ_G0022581.1 mouse_genomes_project 17 24087709 24147389 - MGP_CASTEiJ_P0045942 Cacna1h protein_coding protein_coding MGP_CASTEiJ_T0045943.1 MGP_CASTEiJ_G0022581.1 mouse_genomes_project 17 24087716 24147389 - MGP_CASTEiJ_P0045943 Cacna1h protein_coding protein_coding MGP_CASTEiJ_T0045944.1 MGP_CASTEiJ_G0022581.1 mouse_genomes_project 17 24090285 24093884 - MGP_CASTEiJ_P0045944 Cacna1h protein_coding protein_coding MGP_CASTEiJ_T0045945.1 MGP_CASTEiJ_G0022581.1 mouse_genomes_project 17 24090597 24093512 - MGP_CASTEiJ_P0045945 Cacna1h protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045946.1 MGP_CASTEiJ_G0022581.1 mouse_genomes_project 17 24090952 24092311 - Cacna1h protein_coding retained_intron MGP_CASTEiJ_T0045947.1 MGP_CASTEiJ_G0022581.1 mouse_genomes_project 17 24101479 24102714 - Cacna1h protein_coding retained_intron MGP_CASTEiJ_T0045948.1 MGP_CASTEiJ_G0022581.1 mouse_genomes_project 17 24105549 24147374 - Cacna1h protein_coding retained_intron MGP_CASTEiJ_T0045949.1 MGP_CASTEiJ_G0022581.1 mouse_genomes_project 17 24110905 24146884 - MGP_CASTEiJ_P0045949 Cacna1h protein_coding protein_coding MGP_CASTEiJ_T0045950.1 MGP_CASTEiJ_G0022581.1 mouse_genomes_project 17 24145433 24147389 - Cacna1h protein_coding retained_intron MGP_CASTEiJ_T0047321.1 MGP_CASTEiJ_G0022885.1 mouse_genomes_project 17 36283247 36287931 - MGP_CASTEiJ_P0047321 H2-T3 protein_coding protein_coding MGP_CASTEiJ_T0047322.1 MGP_CASTEiJ_G0022885.1 mouse_genomes_project 17 36283248 36287998 - MGP_CASTEiJ_P0047322 H2-T3 protein_coding protein_coding MGP_CASTEiJ_T0047323.1 MGP_CASTEiJ_G0022885.1 mouse_genomes_project 17 36283344 36287962 - H2-T3 protein_coding retained_intron MGP_CASTEiJ_T0047324.1 MGP_CASTEiJ_G0022885.1 mouse_genomes_project 17 36283353 36287847 - MGP_CASTEiJ_P0047324 H2-T3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047325.1 MGP_CASTEiJ_G0022885.1 mouse_genomes_project 17 36284242 36287835 - H2-T3 protein_coding retained_intron MGP_CASTEiJ_T0047326.1 MGP_CASTEiJ_G0022885.1 mouse_genomes_project 17 36284242 36287835 - MGP_CASTEiJ_P0047326 H2-T3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047327.1 MGP_CASTEiJ_G0022885.1 mouse_genomes_project 17 36284242 36287835 - MGP_CASTEiJ_P0047327 H2-T3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047328.1 MGP_CASTEiJ_G0022885.1 mouse_genomes_project 17 36284245 36287835 - MGP_CASTEiJ_P0047328 H2-T3 protein_coding protein_coding MGP_CASTEiJ_T0047329.1 MGP_CASTEiJ_G0022885.1 mouse_genomes_project 17 36284254 36287835 - MGP_CASTEiJ_P0047329 H2-T3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047330.1 MGP_CASTEiJ_G0022885.1 mouse_genomes_project 17 36284254 36287835 - MGP_CASTEiJ_P0047330 H2-T3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0101737.1 MGP_CASTEiJ_G0038544.1 mouse_genomes_project 17 31554380 31575003 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101738.1 MGP_CASTEiJ_G0038544.1 mouse_genomes_project 17 31554797 31581395 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0012905.1 MGP_CASTEiJ_G0011068.1 mouse_genomes_project 17 82103505 82104467 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045908.1 MGP_CASTEiJ_G0022573.1 mouse_genomes_project 17 23930759 23932132 - Baiap3 protein_coding retained_intron MGP_CASTEiJ_T0045909.1 MGP_CASTEiJ_G0022573.1 mouse_genomes_project 17 23930759 23944470 - MGP_CASTEiJ_P0045909 Baiap3 protein_coding protein_coding MGP_CASTEiJ_T0045910.1 MGP_CASTEiJ_G0022573.1 mouse_genomes_project 17 23931453 23942042 - MGP_CASTEiJ_P0045910 Baiap3 protein_coding protein_coding MGP_CASTEiJ_T0045911.1 MGP_CASTEiJ_G0022573.1 mouse_genomes_project 17 23931468 23932410 - MGP_CASTEiJ_P0045911 Baiap3 protein_coding protein_coding MGP_CASTEiJ_T0045912.1 MGP_CASTEiJ_G0022573.1 mouse_genomes_project 17 23931477 23944387 - MGP_CASTEiJ_P0045912 Baiap3 protein_coding protein_coding MGP_CASTEiJ_T0045913.1 MGP_CASTEiJ_G0022573.1 mouse_genomes_project 17 23931620 23944387 - MGP_CASTEiJ_P0045913 Baiap3 protein_coding protein_coding MGP_CASTEiJ_T0045914.1 MGP_CASTEiJ_G0022573.1 mouse_genomes_project 17 23932891 23933896 - Baiap3 protein_coding retained_intron MGP_CASTEiJ_T0045915.1 MGP_CASTEiJ_G0022573.1 mouse_genomes_project 17 23934125 23936240 - Baiap3 protein_coding retained_intron MGP_CASTEiJ_T0045916.1 MGP_CASTEiJ_G0022573.1 mouse_genomes_project 17 23939115 23944380 - Baiap3 protein_coding retained_intron MGP_CASTEiJ_T0046188.1 MGP_CASTEiJ_G0022637.1 mouse_genomes_project 17 25842369 25845389 + MGP_CASTEiJ_P0046188 Zbtb9 protein_coding protein_coding MGP_CASTEiJ_T0045995.1 MGP_CASTEiJ_G0022594.1 mouse_genomes_project 17 24537987 24539760 - MGP_CASTEiJ_P0045995 Fam173a protein_coding protein_coding MGP_CASTEiJ_T0048054.1 MGP_CASTEiJ_G0023135.1 mouse_genomes_project 17 58428943 58431265 - MGP_CASTEiJ_P0048054 2410015M20Rik protein_coding protein_coding MGP_CASTEiJ_T0003631.1 MGP_CASTEiJ_G0003276.1 mouse_genomes_project 17 34382089 34382515 + Gm20463 antisense antisense MGP_CASTEiJ_T0047073.1 MGP_CASTEiJ_G0022837.1 mouse_genomes_project 17 34915189 34918239 - MGP_CASTEiJ_P0047073 Ly6g6d protein_coding protein_coding MGP_CASTEiJ_T0047074.1 MGP_CASTEiJ_G0022837.1 mouse_genomes_project 17 34915223 34921756 - Ly6g6d protein_coding processed_transcript MGP_CASTEiJ_T0047075.1 MGP_CASTEiJ_G0022837.1 mouse_genomes_project 17 34915291 34918203 - Ly6g6d protein_coding retained_intron MGP_CASTEiJ_T0047076.1 MGP_CASTEiJ_G0022837.1 mouse_genomes_project 17 34917658 34921756 - Ly6g6d protein_coding retained_intron MGP_CASTEiJ_T0047077.1 MGP_CASTEiJ_G0022837.1 mouse_genomes_project 17 34917951 34921747 - Ly6g6d protein_coding processed_transcript MGP_CASTEiJ_T0046493.1 MGP_CASTEiJ_G0022712.1 mouse_genomes_project 17 30718548 30769765 + MGP_CASTEiJ_P0046493 Slc37a1 protein_coding protein_coding MGP_CASTEiJ_T0046644.1 MGP_CASTEiJ_G0022749.1 mouse_genomes_project 17 32789818 32792223 + MGP_CASTEiJ_P0046644 protein_coding protein_coding MGP_CASTEiJ_T0047533.1 MGP_CASTEiJ_G0022991.1 mouse_genomes_project 17 45451150 45707989 - MGP_CASTEiJ_P0047533 Runx2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047534.1 MGP_CASTEiJ_G0022991.1 mouse_genomes_project 17 45564718 45796693 - MGP_CASTEiJ_P0047534 Runx2 protein_coding protein_coding MGP_CASTEiJ_T0047535.1 MGP_CASTEiJ_G0022991.1 mouse_genomes_project 17 45564718 45708461 - MGP_CASTEiJ_P0047535 Runx2 protein_coding protein_coding MGP_CASTEiJ_T0047536.1 MGP_CASTEiJ_G0022991.1 mouse_genomes_project 17 45566956 45707523 - MGP_CASTEiJ_P0047536 Runx2 protein_coding protein_coding MGP_CASTEiJ_T0047537.1 MGP_CASTEiJ_G0022991.1 mouse_genomes_project 17 45568221 45796477 - MGP_CASTEiJ_P0047537 Runx2 protein_coding protein_coding MGP_CASTEiJ_T0047538.1 MGP_CASTEiJ_G0022991.1 mouse_genomes_project 17 45568509 45707447 - MGP_CASTEiJ_P0047538 Runx2 protein_coding protein_coding MGP_CASTEiJ_T0047539.1 MGP_CASTEiJ_G0022991.1 mouse_genomes_project 17 45568509 45796122 - MGP_CASTEiJ_P0047539 Runx2 protein_coding protein_coding MGP_CASTEiJ_T0047540.1 MGP_CASTEiJ_G0022991.1 mouse_genomes_project 17 45568595 45796523 - MGP_CASTEiJ_P0047540 Runx2 protein_coding protein_coding MGP_CASTEiJ_T0047541.1 MGP_CASTEiJ_G0022991.1 mouse_genomes_project 17 45568691 45796693 - MGP_CASTEiJ_P0047541 Runx2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047542.1 MGP_CASTEiJ_G0022991.1 mouse_genomes_project 17 45569005 45707173 - MGP_CASTEiJ_P0047542 Runx2 protein_coding protein_coding MGP_CASTEiJ_T0047543.1 MGP_CASTEiJ_G0022991.1 mouse_genomes_project 17 45600018 45707447 - MGP_CASTEiJ_P0047543 Runx2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047544.1 MGP_CASTEiJ_G0022991.1 mouse_genomes_project 17 45603387 45706500 - MGP_CASTEiJ_P0047544 Runx2 protein_coding protein_coding MGP_CASTEiJ_T0047545.1 MGP_CASTEiJ_G0022991.1 mouse_genomes_project 17 45603483 45796160 - MGP_CASTEiJ_P0047545 Runx2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047546.1 MGP_CASTEiJ_G0022991.1 mouse_genomes_project 17 45648657 45707184 - MGP_CASTEiJ_P0047546 Runx2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047551.1 MGP_CASTEiJ_G0022991.1 mouse_genomes_project 17 45795801 45796523 - Runx2 protein_coding retained_intron MGP_CASTEiJ_T0006817.1 MGP_CASTEiJ_G0005622.1 mouse_genomes_project 17 95475456 95504172 + Gm15404 lincRNA lincRNA MGP_CASTEiJ_T0045554.1 MGP_CASTEiJ_G0022475.1 mouse_genomes_project 17 20086659 20122391 - protein_coding processed_transcript MGP_CASTEiJ_T0045555.1 MGP_CASTEiJ_G0022475.1 mouse_genomes_project 17 20120786 20122677 - protein_coding retained_intron MGP_CASTEiJ_T0048145.1 MGP_CASTEiJ_G0023181.1 mouse_genomes_project 17 67509062 67787363 - MGP_CASTEiJ_P0048145 Tmem232 protein_coding protein_coding MGP_CASTEiJ_T0048146.1 MGP_CASTEiJ_G0023181.1 mouse_genomes_project 17 67509064 67787357 - MGP_CASTEiJ_P0048146 Tmem232 protein_coding protein_coding MGP_CASTEiJ_T0012913.1 MGP_CASTEiJ_G0011076.1 mouse_genomes_project 17 94654883 94656123 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003603.1 MGP_CASTEiJ_G0003257.1 mouse_genomes_project 17 23158779 23159280 + Rab26os antisense antisense MGP_CASTEiJ_T0003604.1 MGP_CASTEiJ_G0003257.1 mouse_genomes_project 17 23158798 23159279 + Rab26os antisense antisense MGP_CASTEiJ_T0046086.1 MGP_CASTEiJ_G0022614.1 mouse_genomes_project 17 24860760 24871890 - MGP_CASTEiJ_P0046086 Decr2 protein_coding protein_coding MGP_CASTEiJ_T0046087.1 MGP_CASTEiJ_G0022614.1 mouse_genomes_project 17 24862440 24863475 - Decr2 protein_coding processed_transcript MGP_CASTEiJ_T0046088.1 MGP_CASTEiJ_G0022614.1 mouse_genomes_project 17 24863189 24871890 - Decr2 protein_coding retained_intron MGP_CASTEiJ_T0046089.1 MGP_CASTEiJ_G0022614.1 mouse_genomes_project 17 24863648 24871880 - Decr2 protein_coding processed_transcript MGP_CASTEiJ_T0046090.1 MGP_CASTEiJ_G0022614.1 mouse_genomes_project 17 24868800 24871919 - Decr2 protein_coding processed_transcript MGP_CASTEiJ_T0048316.1 MGP_CASTEiJ_G0023224.1 mouse_genomes_project 17 76180907 76416404 - MGP_CASTEiJ_P0048316 Galnt14 protein_coding protein_coding MGP_CASTEiJ_T0048317.1 MGP_CASTEiJ_G0023224.1 mouse_genomes_project 17 76195252 76416368 - MGP_CASTEiJ_P0048317 Galnt14 protein_coding protein_coding MGP_CASTEiJ_T0048318.1 MGP_CASTEiJ_G0023224.1 mouse_genomes_project 17 76265800 76416406 - Galnt14 protein_coding retained_intron MGP_CASTEiJ_T0102159.1 MGP_CASTEiJ_G0038884.1 mouse_genomes_project 17 36315155 36317836 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0048402.1 MGP_CASTEiJ_G0023256.1 mouse_genomes_project 17 82805481 82814976 - MGP_CASTEiJ_P0048402 Cyp1b1 protein_coding protein_coding MGP_CASTEiJ_T0046642.1 MGP_CASTEiJ_G0022748.1 mouse_genomes_project 17 32745535 32749622 - MGP_CASTEiJ_P0046642 Morc2b protein_coding protein_coding MGP_CASTEiJ_T0046643.1 MGP_CASTEiJ_G0022748.1 mouse_genomes_project 17 32745590 32749438 - MGP_CASTEiJ_P0046643 Morc2b protein_coding protein_coding MGP_CASTEiJ_T0047222.1 MGP_CASTEiJ_G0022869.1 mouse_genomes_project 17 35903952 35905192 + MGP_CASTEiJ_P0047222 Ier3 protein_coding protein_coding MGP_CASTEiJ_T0098355.1 MGP_CASTEiJ_G0035286.1 mouse_genomes_project 17 81175806 81176164 - pseudogene pseudogene MGP_CASTEiJ_T0047494.1 MGP_CASTEiJ_G0022973.1 mouse_genomes_project 17 43037329 43239810 + MGP_CASTEiJ_P0047494 Ptchd4 protein_coding protein_coding MGP_CASTEiJ_T0045651.1 MGP_CASTEiJ_G0022509.1 mouse_genomes_project 17 22427225 22430708 + MGP_CASTEiJ_P0045651 Dcpp1 protein_coding protein_coding MGP_CASTEiJ_T0012849.1 MGP_CASTEiJ_G0011012.1 mouse_genomes_project 17 33797935 33798148 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009953.1 MGP_CASTEiJ_G0008141.1 mouse_genomes_project 17 94987545 94987690 + miRNA miRNA MGP_CASTEiJ_T0102181.1 MGP_CASTEiJ_G0038906.1 mouse_genomes_project 17 37698964 37699891 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0006727.1 MGP_CASTEiJ_G0005556.1 mouse_genomes_project 17 21252165 21288194 - Gm16386 lincRNA lincRNA MGP_CASTEiJ_T0048355.1 MGP_CASTEiJ_G0023236.1 mouse_genomes_project 17 77835063 78240484 + MGP_CASTEiJ_P0048355 Ltbp1 protein_coding protein_coding MGP_CASTEiJ_T0048356.1 MGP_CASTEiJ_G0023236.1 mouse_genomes_project 17 78016919 78193186 + MGP_CASTEiJ_P0048356 Ltbp1 protein_coding protein_coding MGP_CASTEiJ_T0048357.1 MGP_CASTEiJ_G0023236.1 mouse_genomes_project 17 78016919 78240058 + MGP_CASTEiJ_P0048357 Ltbp1 protein_coding protein_coding MGP_CASTEiJ_T0048358.1 MGP_CASTEiJ_G0023236.1 mouse_genomes_project 17 78017020 78240046 + MGP_CASTEiJ_P0048358 Ltbp1 protein_coding protein_coding MGP_CASTEiJ_T0048359.1 MGP_CASTEiJ_G0023236.1 mouse_genomes_project 17 78132788 78137187 + Ltbp1 protein_coding retained_intron MGP_CASTEiJ_T0048360.1 MGP_CASTEiJ_G0023236.1 mouse_genomes_project 17 78232924 78241229 + Ltbp1 protein_coding retained_intron MGP_CASTEiJ_T0009901.1 MGP_CASTEiJ_G0008089.1 mouse_genomes_project 17 15585623 15585691 + Mir125a miRNA miRNA MGP_CASTEiJ_T0045513.1 MGP_CASTEiJ_G0022448.1 mouse_genomes_project 17 18390630 18391527 + MGP_CASTEiJ_P0045513 Vmn1r224 protein_coding protein_coding MGP_CASTEiJ_T0047020.1 MGP_CASTEiJ_G0022827.1 mouse_genomes_project 17 34813838 34820513 + MGP_CASTEiJ_P0047020 protein_coding protein_coding MGP_CASTEiJ_T0102169.1 MGP_CASTEiJ_G0038894.1 mouse_genomes_project 17 36895320 36895749 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0046607.1 MGP_CASTEiJ_G0022735.1 mouse_genomes_project 17 32242029 32261164 + MGP_CASTEiJ_P0046607 Cyp4f40 protein_coding protein_coding MGP_CASTEiJ_T0048290.1 MGP_CASTEiJ_G0023213.1 mouse_genomes_project 17 74071667 74103968 - MGP_CASTEiJ_P0048290 Ndc80 protein_coding protein_coding MGP_CASTEiJ_T0006737.1 MGP_CASTEiJ_G0005564.1 mouse_genomes_project 17 26094859 26096907 + Gm26724 lincRNA lincRNA MGP_CASTEiJ_T0048100.1 MGP_CASTEiJ_G0023163.1 mouse_genomes_project 17 59075564 59080276 - MGP_CASTEiJ_P0048100 Tnfsf14 protein_coding protein_coding MGP_CASTEiJ_T0045367.1 MGP_CASTEiJ_G0022397.1 mouse_genomes_project 17 10552275 10574285 - MGP_CASTEiJ_P0045367 Pnldc1 protein_coding protein_coding MGP_CASTEiJ_T0048278.1 MGP_CASTEiJ_G0023211.1 mouse_genomes_project 17 73913135 73925176 - Smchd1 protein_coding processed_transcript MGP_CASTEiJ_T0048279.1 MGP_CASTEiJ_G0023211.1 mouse_genomes_project 17 73913135 74046607 - MGP_CASTEiJ_P0048279 Smchd1 protein_coding protein_coding MGP_CASTEiJ_T0048280.1 MGP_CASTEiJ_G0023211.1 mouse_genomes_project 17 73915157 73917649 - Smchd1 protein_coding retained_intron MGP_CASTEiJ_T0048281.1 MGP_CASTEiJ_G0023211.1 mouse_genomes_project 17 73917562 73931158 - Smchd1 protein_coding retained_intron MGP_CASTEiJ_T0048282.1 MGP_CASTEiJ_G0023211.1 mouse_genomes_project 17 73919529 73922072 - Smchd1 protein_coding retained_intron MGP_CASTEiJ_T0048283.1 MGP_CASTEiJ_G0023211.1 mouse_genomes_project 17 73925766 73930549 - Smchd1 protein_coding retained_intron MGP_CASTEiJ_T0048284.1 MGP_CASTEiJ_G0023211.1 mouse_genomes_project 17 73957047 73958294 - Smchd1 protein_coding retained_intron MGP_CASTEiJ_T0048285.1 MGP_CASTEiJ_G0023211.1 mouse_genomes_project 17 73960437 73961257 - Smchd1 protein_coding retained_intron MGP_CASTEiJ_T0048289.1 MGP_CASTEiJ_G0023211.1 mouse_genomes_project 17 74043749 74046592 - Smchd1 protein_coding retained_intron MGP_CASTEiJ_T0046333.1 MGP_CASTEiJ_G0022671.1 mouse_genomes_project 17 27654283 27688080 - MGP_CASTEiJ_P0046333 Srpk1 protein_coding protein_coding MGP_CASTEiJ_T0046334.1 MGP_CASTEiJ_G0022671.1 mouse_genomes_project 17 27656158 27673860 - MGP_CASTEiJ_P0046334 Srpk1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046335.1 MGP_CASTEiJ_G0022671.1 mouse_genomes_project 17 27656558 27659009 - Srpk1 protein_coding retained_intron MGP_CASTEiJ_T0046336.1 MGP_CASTEiJ_G0022671.1 mouse_genomes_project 17 27662019 27667444 - Srpk1 protein_coding retained_intron MGP_CASTEiJ_T0046337.1 MGP_CASTEiJ_G0022671.1 mouse_genomes_project 17 27666895 27667819 - Srpk1 protein_coding retained_intron MGP_CASTEiJ_T0046338.1 MGP_CASTEiJ_G0022671.1 mouse_genomes_project 17 27669100 27688010 - Srpk1 protein_coding retained_intron MGP_CASTEiJ_T0046339.1 MGP_CASTEiJ_G0022671.1 mouse_genomes_project 17 27685700 27688031 - MGP_CASTEiJ_P0046339 Srpk1 protein_coding protein_coding MGP_CASTEiJ_T0098546.1 MGP_CASTEiJ_G0035477.1 mouse_genomes_project 17 87288992 87289101 + Gm23905 rRNA rRNA MGP_CASTEiJ_T0011102.1 MGP_CASTEiJ_G0009290.1 mouse_genomes_project 17 69941713 69941990 + Gm22277 misc_RNA misc_RNA MGP_CASTEiJ_T0048398.1 MGP_CASTEiJ_G0023252.1 mouse_genomes_project 17 82109024 82146535 + MGP_CASTEiJ_P0048398 Qpct protein_coding protein_coding MGP_CASTEiJ_T0047488.1 MGP_CASTEiJ_G0022969.1 mouse_genomes_project 17 41600769 41605843 - MGP_CASTEiJ_P0047488 9130008F23Rik protein_coding protein_coding MGP_CASTEiJ_T0047251.1 MGP_CASTEiJ_G0022875.1 mouse_genomes_project 17 35965355 35982657 + MGP_CASTEiJ_P0047251 Dhx16 protein_coding protein_coding MGP_CASTEiJ_T0047252.1 MGP_CASTEiJ_G0022875.1 mouse_genomes_project 17 35965361 35982612 + MGP_CASTEiJ_P0047252 Dhx16 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047253.1 MGP_CASTEiJ_G0022875.1 mouse_genomes_project 17 35973181 35975086 + Dhx16 protein_coding retained_intron MGP_CASTEiJ_T0047254.1 MGP_CASTEiJ_G0022875.1 mouse_genomes_project 17 35973427 35974145 + Dhx16 protein_coding retained_intron MGP_CASTEiJ_T0047255.1 MGP_CASTEiJ_G0022875.1 mouse_genomes_project 17 35973433 35974233 + Dhx16 protein_coding retained_intron MGP_CASTEiJ_T0047256.1 MGP_CASTEiJ_G0022875.1 mouse_genomes_project 17 35973517 35974984 + Dhx16 protein_coding retained_intron MGP_CASTEiJ_T0047257.1 MGP_CASTEiJ_G0022875.1 mouse_genomes_project 17 35974687 35982653 + MGP_CASTEiJ_P0047257 Dhx16 protein_coding protein_coding MGP_CASTEiJ_T0047258.1 MGP_CASTEiJ_G0022875.1 mouse_genomes_project 17 35979154 35982540 + Dhx16 protein_coding retained_intron MGP_CASTEiJ_T0046148.1 MGP_CASTEiJ_G0022628.1 mouse_genomes_project 17 25406290 25505084 + MGP_CASTEiJ_P0046148 Ergic1 protein_coding protein_coding MGP_CASTEiJ_T0046149.1 MGP_CASTEiJ_G0022628.1 mouse_genomes_project 17 25406319 25415532 + Ergic1 protein_coding processed_transcript MGP_CASTEiJ_T0046150.1 MGP_CASTEiJ_G0022628.1 mouse_genomes_project 17 25406346 25503333 + Ergic1 protein_coding processed_transcript MGP_CASTEiJ_T0046151.1 MGP_CASTEiJ_G0022628.1 mouse_genomes_project 17 25460426 25480259 + MGP_CASTEiJ_P0046151 Ergic1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046152.1 MGP_CASTEiJ_G0022628.1 mouse_genomes_project 17 25467402 25503333 + Ergic1 protein_coding processed_transcript MGP_CASTEiJ_T0046153.1 MGP_CASTEiJ_G0022628.1 mouse_genomes_project 17 25470109 25491862 + Ergic1 protein_coding retained_intron MGP_CASTEiJ_T0046154.1 MGP_CASTEiJ_G0022628.1 mouse_genomes_project 17 25484591 25503511 + MGP_CASTEiJ_P0046154 Ergic1 protein_coding protein_coding MGP_CASTEiJ_T0045546.1 MGP_CASTEiJ_G0022472.1 mouse_genomes_project 17 19840829 19842957 + MGP_CASTEiJ_P0045546 Gm10226 protein_coding protein_coding MGP_CASTEiJ_T0102122.1 MGP_CASTEiJ_G0038847.1 mouse_genomes_project 17 18404561 18405413 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099545.1 MGP_CASTEiJ_G0036458.1 mouse_genomes_project 17 75634157 75634264 + Gm23649 snRNA snRNA MGP_CASTEiJ_T0006741.1 MGP_CASTEiJ_G0005568.1 mouse_genomes_project 17 27582690 27584780 + E230001N04Rik lincRNA lincRNA MGP_CASTEiJ_T0006742.1 MGP_CASTEiJ_G0005568.1 mouse_genomes_project 17 27582726 27584780 + E230001N04Rik lincRNA lincRNA MGP_CASTEiJ_T0045723.1 MGP_CASTEiJ_G0022527.1 mouse_genomes_project 17 23060414 23073681 - MGP_CASTEiJ_P0045723 E4f1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045724.1 MGP_CASTEiJ_G0022527.1 mouse_genomes_project 17 23060434 23071969 - MGP_CASTEiJ_P0045724 E4f1 protein_coding protein_coding MGP_CASTEiJ_T0100778.1 MGP_CASTEiJ_G0037691.1 mouse_genomes_project 17 85484367 85484496 - Gm22386 snoRNA snoRNA MGP_CASTEiJ_T0006761.1 MGP_CASTEiJ_G0005582.1 mouse_genomes_project 17 33919127 33920979 + Gm20506 lincRNA lincRNA MGP_CASTEiJ_T0045657.1 MGP_CASTEiJ_G0022511.1 mouse_genomes_project 17 22571821 22576408 - MGP_CASTEiJ_P0045657 Prss22 protein_coding protein_coding MGP_CASTEiJ_T0047952.1 MGP_CASTEiJ_G0023098.1 mouse_genomes_project 17 55555394 55572030 - MGP_CASTEiJ_P0047952 Sult1c2 protein_coding protein_coding MGP_CASTEiJ_T0099519.1 MGP_CASTEiJ_G0036432.1 mouse_genomes_project 17 11289968 11290075 + Gm24867 snRNA snRNA MGP_CASTEiJ_T0047210.1 MGP_CASTEiJ_G0022868.1 mouse_genomes_project 17 35748510 35769284 - MGP_CASTEiJ_P0047210 Ddr1 protein_coding protein_coding MGP_CASTEiJ_T0047211.1 MGP_CASTEiJ_G0022868.1 mouse_genomes_project 17 35748510 35773089 - MGP_CASTEiJ_P0047211 Ddr1 protein_coding protein_coding MGP_CASTEiJ_T0047212.1 MGP_CASTEiJ_G0022868.1 mouse_genomes_project 17 35748513 35772531 - MGP_CASTEiJ_P0047212 Ddr1 protein_coding protein_coding MGP_CASTEiJ_T0047213.1 MGP_CASTEiJ_G0022868.1 mouse_genomes_project 17 35748513 35772629 - MGP_CASTEiJ_P0047213 Ddr1 protein_coding protein_coding MGP_CASTEiJ_T0047214.1 MGP_CASTEiJ_G0022868.1 mouse_genomes_project 17 35748513 35770681 - MGP_CASTEiJ_P0047214 Ddr1 protein_coding protein_coding MGP_CASTEiJ_T0047215.1 MGP_CASTEiJ_G0022868.1 mouse_genomes_project 17 35749372 35769226 - MGP_CASTEiJ_P0047215 Ddr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047216.1 MGP_CASTEiJ_G0022868.1 mouse_genomes_project 17 35752375 35770601 - MGP_CASTEiJ_P0047216 Ddr1 protein_coding protein_coding MGP_CASTEiJ_T0047217.1 MGP_CASTEiJ_G0022868.1 mouse_genomes_project 17 35757117 35772467 - MGP_CASTEiJ_P0047217 Ddr1 protein_coding protein_coding MGP_CASTEiJ_T0047218.1 MGP_CASTEiJ_G0022868.1 mouse_genomes_project 17 35757145 35773111 - MGP_CASTEiJ_P0047218 Ddr1 protein_coding protein_coding MGP_CASTEiJ_T0047219.1 MGP_CASTEiJ_G0022868.1 mouse_genomes_project 17 35757245 35766645 - MGP_CASTEiJ_P0047219 Ddr1 protein_coding protein_coding MGP_CASTEiJ_T0047220.1 MGP_CASTEiJ_G0022868.1 mouse_genomes_project 17 35759801 35770683 - MGP_CASTEiJ_P0047220 Ddr1 protein_coding protein_coding MGP_CASTEiJ_T0047221.1 MGP_CASTEiJ_G0022868.1 mouse_genomes_project 17 35761667 35770954 - MGP_CASTEiJ_P0047221 Ddr1 protein_coding protein_coding MGP_CASTEiJ_T0016840.1 MGP_CASTEiJ_G0014667.1 mouse_genomes_project 17 50863863 50865166 - Gm20540 processed_transcript processed_transcript MGP_CASTEiJ_T0047051.1 MGP_CASTEiJ_G0022832.1 mouse_genomes_project 17 34870895 34872165 - Msh5 protein_coding processed_transcript MGP_CASTEiJ_T0047052.1 MGP_CASTEiJ_G0022832.1 mouse_genomes_project 17 34870895 34889790 - MGP_CASTEiJ_P0047052 Msh5 protein_coding protein_coding MGP_CASTEiJ_T0047053.1 MGP_CASTEiJ_G0022832.1 mouse_genomes_project 17 34870895 34890631 - MGP_CASTEiJ_P0047053 Msh5 protein_coding protein_coding MGP_CASTEiJ_T0047054.1 MGP_CASTEiJ_G0022832.1 mouse_genomes_project 17 34870899 34875594 - MGP_CASTEiJ_P0047054 Msh5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047055.1 MGP_CASTEiJ_G0022832.1 mouse_genomes_project 17 34870973 34889710 - MGP_CASTEiJ_P0047055 Msh5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047056.1 MGP_CASTEiJ_G0022832.1 mouse_genomes_project 17 34870973 34889710 - MGP_CASTEiJ_P0047056 Msh5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047057.1 MGP_CASTEiJ_G0022832.1 mouse_genomes_project 17 34880472 34890650 - MGP_CASTEiJ_P0047057 Msh5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047058.1 MGP_CASTEiJ_G0022832.1 mouse_genomes_project 17 34882525 34886928 - Msh5 protein_coding retained_intron MGP_CASTEiJ_T0047059.1 MGP_CASTEiJ_G0022832.1 mouse_genomes_project 17 34882525 34889693 - Msh5 protein_coding retained_intron MGP_CASTEiJ_T0047060.1 MGP_CASTEiJ_G0022832.1 mouse_genomes_project 17 34887128 34889281 - Msh5 protein_coding retained_intron MGP_CASTEiJ_T0047061.1 MGP_CASTEiJ_G0022832.1 mouse_genomes_project 17 34887137 34888174 - Msh5 protein_coding retained_intron MGP_CASTEiJ_T0047062.1 MGP_CASTEiJ_G0022832.1 mouse_genomes_project 17 34887262 34889688 - MGP_CASTEiJ_P0047062 Msh5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012825.1 MGP_CASTEiJ_G0010988.1 mouse_genomes_project 17 3014819 3015303 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045392.1 MGP_CASTEiJ_G0022404.1 mouse_genomes_project 17 10901597 10910650 + MGP_CASTEiJ_P0045392 protein_coding protein_coding MGP_CASTEiJ_T0012826.1 MGP_CASTEiJ_G0010989.1 mouse_genomes_project 17 3035973 3036294 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000945.1 MGP_CASTEiJ_G0000881.1 mouse_genomes_project 17 30967292 30972865 - TEC TEC MGP_CASTEiJ_T0045610.1 MGP_CASTEiJ_G0022494.1 mouse_genomes_project 17 22211769 22213769 - MGP_CASTEiJ_P0045610 Tnfrsf12a protein_coding protein_coding MGP_CASTEiJ_T0045611.1 MGP_CASTEiJ_G0022494.1 mouse_genomes_project 17 22211769 22213769 - MGP_CASTEiJ_P0045611 Tnfrsf12a protein_coding protein_coding MGP_CASTEiJ_T0045622.1 MGP_CASTEiJ_G0022501.1 mouse_genomes_project 17 22288027 22308897 - MGP_CASTEiJ_P0045622 Flywch1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045623.1 MGP_CASTEiJ_G0022501.1 mouse_genomes_project 17 22290664 22308860 - MGP_CASTEiJ_P0045623 Flywch1 protein_coding protein_coding MGP_CASTEiJ_T0045624.1 MGP_CASTEiJ_G0022501.1 mouse_genomes_project 17 22290673 22300617 - MGP_CASTEiJ_P0045624 Flywch1 protein_coding protein_coding MGP_CASTEiJ_T0102152.1 MGP_CASTEiJ_G0038877.1 mouse_genomes_project 17 36042289 36047339 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045432.1 MGP_CASTEiJ_G0022415.1 mouse_genomes_project 17 12674470 12708494 + MGP_CASTEiJ_P0045432 protein_coding protein_coding MGP_CASTEiJ_T0047479.1 MGP_CASTEiJ_G0022964.1 mouse_genomes_project 17 41288708 41306738 + MGP_CASTEiJ_P0047479 Gm44501 protein_coding protein_coding MGP_CASTEiJ_T0099532.1 MGP_CASTEiJ_G0036445.1 mouse_genomes_project 17 37573963 37574126 - Gm25104 snRNA snRNA MGP_CASTEiJ_T0047799.1 MGP_CASTEiJ_G0023060.1 mouse_genomes_project 17 48895763 48903515 - MGP_CASTEiJ_P0047799 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012856.1 MGP_CASTEiJ_G0011019.1 mouse_genomes_project 17 36330788 36331346 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102177.1 MGP_CASTEiJ_G0038902.1 mouse_genomes_project 17 37671096 37672020 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045272.1 MGP_CASTEiJ_G0022365.1 mouse_genomes_project 17 4372667 4523276 + MGP_CASTEiJ_P0045272 Rps6ka2 protein_coding protein_coding MGP_CASTEiJ_T0046786.1 MGP_CASTEiJ_G0022779.1 mouse_genomes_project 17 33688149 33692664 - MGP_CASTEiJ_P0046786 Slc39a7 protein_coding protein_coding MGP_CASTEiJ_T0046787.1 MGP_CASTEiJ_G0022779.1 mouse_genomes_project 17 33688151 33692518 - MGP_CASTEiJ_P0046787 Slc39a7 protein_coding protein_coding MGP_CASTEiJ_T0046788.1 MGP_CASTEiJ_G0022779.1 mouse_genomes_project 17 33688155 33692622 - Slc39a7 protein_coding retained_intron MGP_CASTEiJ_T0046789.1 MGP_CASTEiJ_G0022779.1 mouse_genomes_project 17 33690819 33692002 - Slc39a7 protein_coding retained_intron MGP_CASTEiJ_T0046790.1 MGP_CASTEiJ_G0022779.1 mouse_genomes_project 17 33691147 33692630 - MGP_CASTEiJ_P0046790 Slc39a7 protein_coding protein_coding MGP_CASTEiJ_T0046791.1 MGP_CASTEiJ_G0022779.1 mouse_genomes_project 17 33691566 33692656 - Slc39a7 protein_coding processed_transcript MGP_CASTEiJ_T0045957.1 MGP_CASTEiJ_G0022585.1 mouse_genomes_project 17 24305005 24390389 + MGP_CASTEiJ_P0045957 Lmf1 protein_coding protein_coding MGP_CASTEiJ_T0045958.1 MGP_CASTEiJ_G0022585.1 mouse_genomes_project 17 24305008 24390389 + MGP_CASTEiJ_P0045958 Lmf1 protein_coding protein_coding MGP_CASTEiJ_T0045959.1 MGP_CASTEiJ_G0022585.1 mouse_genomes_project 17 24305018 24324520 + Lmf1 protein_coding retained_intron MGP_CASTEiJ_T0045960.1 MGP_CASTEiJ_G0022585.1 mouse_genomes_project 17 24305018 24390285 + MGP_CASTEiJ_P0045960 Lmf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045961.1 MGP_CASTEiJ_G0022585.1 mouse_genomes_project 17 24305028 24383491 + MGP_CASTEiJ_P0045961 Lmf1 protein_coding protein_coding MGP_CASTEiJ_T0045962.1 MGP_CASTEiJ_G0022585.1 mouse_genomes_project 17 24305030 24315163 + Lmf1 protein_coding retained_intron MGP_CASTEiJ_T0045963.1 MGP_CASTEiJ_G0022585.1 mouse_genomes_project 17 24305030 24362482 + Lmf1 protein_coding retained_intron MGP_CASTEiJ_T0045964.1 MGP_CASTEiJ_G0022585.1 mouse_genomes_project 17 24305030 24376738 + Lmf1 protein_coding retained_intron MGP_CASTEiJ_T0045965.1 MGP_CASTEiJ_G0022585.1 mouse_genomes_project 17 24305151 24358325 + Lmf1 protein_coding processed_transcript MGP_CASTEiJ_T0045966.1 MGP_CASTEiJ_G0022585.1 mouse_genomes_project 17 24384051 24385091 + MGP_CASTEiJ_P0045966 Lmf1 protein_coding protein_coding MGP_CASTEiJ_T0045414.1 MGP_CASTEiJ_G0022407.1 mouse_genomes_project 17 11840356 11848826 - MGP_CASTEiJ_P0045414 Dact2 protein_coding protein_coding MGP_CASTEiJ_T0047299.1 MGP_CASTEiJ_G0022880.1 mouse_genomes_project 17 36052620 36065461 - MGP_CASTEiJ_P0047299 Abcf1 protein_coding protein_coding MGP_CASTEiJ_T0047300.1 MGP_CASTEiJ_G0022880.1 mouse_genomes_project 17 36053088 36054288 - Abcf1 protein_coding retained_intron MGP_CASTEiJ_T0047301.1 MGP_CASTEiJ_G0022880.1 mouse_genomes_project 17 36053102 36053990 - Abcf1 protein_coding retained_intron MGP_CASTEiJ_T0047302.1 MGP_CASTEiJ_G0022880.1 mouse_genomes_project 17 36053872 36055268 - Abcf1 protein_coding retained_intron MGP_CASTEiJ_T0047303.1 MGP_CASTEiJ_G0022880.1 mouse_genomes_project 17 36054471 36055416 - Abcf1 protein_coding retained_intron MGP_CASTEiJ_T0047304.1 MGP_CASTEiJ_G0022880.1 mouse_genomes_project 17 36057502 36059972 - Abcf1 protein_coding retained_intron MGP_CASTEiJ_T0047305.1 MGP_CASTEiJ_G0022880.1 mouse_genomes_project 17 36059448 36065059 - MGP_CASTEiJ_P0047305 Abcf1 protein_coding protein_coding MGP_CASTEiJ_T0047306.1 MGP_CASTEiJ_G0022880.1 mouse_genomes_project 17 36059953 36065461 - MGP_CASTEiJ_P0047306 Abcf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047338.1 MGP_CASTEiJ_G0022888.1 mouse_genomes_project 17 36361054 36370920 - MGP_CASTEiJ_P0047338 Trim39 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047339.1 MGP_CASTEiJ_G0022888.1 mouse_genomes_project 17 36361282 36373590 - MGP_CASTEiJ_P0047339 Trim39 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047340.1 MGP_CASTEiJ_G0022888.1 mouse_genomes_project 17 36361291 36371388 - MGP_CASTEiJ_P0047340 Trim39 protein_coding protein_coding MGP_CASTEiJ_T0047341.1 MGP_CASTEiJ_G0022888.1 mouse_genomes_project 17 36363713 36370863 - Trim39 protein_coding processed_transcript MGP_CASTEiJ_T0047342.1 MGP_CASTEiJ_G0022888.1 mouse_genomes_project 17 36364786 36373548 - Trim39 protein_coding processed_transcript MGP_CASTEiJ_T0047343.1 MGP_CASTEiJ_G0022888.1 mouse_genomes_project 17 36364788 36374412 - Trim39 protein_coding retained_intron MGP_CASTEiJ_T0012889.1 MGP_CASTEiJ_G0011052.1 mouse_genomes_project 17 56939498 56939874 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046396.1 MGP_CASTEiJ_G0022683.1 mouse_genomes_project 17 28251116 28264591 + MGP_CASTEiJ_P0046396 Rab44 protein_coding protein_coding MGP_CASTEiJ_T0046397.1 MGP_CASTEiJ_G0022683.1 mouse_genomes_project 17 28252423 28263855 + Rab44 protein_coding processed_transcript MGP_CASTEiJ_T0047379.1 MGP_CASTEiJ_G0022902.1 mouse_genomes_project 17 37218227 37226447 + MGP_CASTEiJ_P0047379 Znrd1as protein_coding protein_coding MGP_CASTEiJ_T0047380.1 MGP_CASTEiJ_G0022902.1 mouse_genomes_project 17 37218254 37225745 + Znrd1as protein_coding retained_intron MGP_CASTEiJ_T0047381.1 MGP_CASTEiJ_G0022902.1 mouse_genomes_project 17 37218276 37226447 + MGP_CASTEiJ_P0047381 Znrd1as protein_coding protein_coding MGP_CASTEiJ_T0048105.1 MGP_CASTEiJ_G0023165.1 mouse_genomes_project 17 59121109 59135294 - MGP_CASTEiJ_P0048105 Gpr108 protein_coding protein_coding MGP_CASTEiJ_T0003648.1 MGP_CASTEiJ_G0003290.1 mouse_genomes_project 17 46697437 46700364 + Gm16172 antisense antisense MGP_CASTEiJ_T0046528.1 MGP_CASTEiJ_G0022717.1 mouse_genomes_project 17 31065017 31090225 - MGP_CASTEiJ_P0046528 Cbs protein_coding protein_coding MGP_CASTEiJ_T0046529.1 MGP_CASTEiJ_G0022717.1 mouse_genomes_project 17 31065034 31090191 - MGP_CASTEiJ_P0046529 Cbs protein_coding protein_coding MGP_CASTEiJ_T0046530.1 MGP_CASTEiJ_G0022717.1 mouse_genomes_project 17 31065035 31090191 - MGP_CASTEiJ_P0046530 Cbs protein_coding protein_coding MGP_CASTEiJ_T0046531.1 MGP_CASTEiJ_G0022717.1 mouse_genomes_project 17 31069571 31070280 - Cbs protein_coding retained_intron MGP_CASTEiJ_T0046532.1 MGP_CASTEiJ_G0022717.1 mouse_genomes_project 17 31073404 31078579 - Cbs protein_coding processed_transcript MGP_CASTEiJ_T0046533.1 MGP_CASTEiJ_G0022717.1 mouse_genomes_project 17 31073928 31075512 - Cbs protein_coding processed_transcript MGP_CASTEiJ_T0046534.1 MGP_CASTEiJ_G0022717.1 mouse_genomes_project 17 31077530 31089822 - MGP_CASTEiJ_P0046534 Cbs protein_coding protein_coding MGP_CASTEiJ_T0046535.1 MGP_CASTEiJ_G0022717.1 mouse_genomes_project 17 31077584 31089681 - MGP_CASTEiJ_P0046535 Cbs protein_coding protein_coding MGP_CASTEiJ_T0046536.1 MGP_CASTEiJ_G0022717.1 mouse_genomes_project 17 31079914 31089681 - MGP_CASTEiJ_P0046536 Cbs protein_coding protein_coding MGP_CASTEiJ_T0045993.1 MGP_CASTEiJ_G0022593.1 mouse_genomes_project 17 24531081 24537993 + MGP_CASTEiJ_P0045993 Ccdc78 protein_coding protein_coding MGP_CASTEiJ_T0045994.1 MGP_CASTEiJ_G0022593.1 mouse_genomes_project 17 24531117 24534714 + MGP_CASTEiJ_P0045994 Ccdc78 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045476.1 MGP_CASTEiJ_G0022426.1 mouse_genomes_project 17 15265229 15358322 - MGP_CASTEiJ_P0045476 Lnpep protein_coding protein_coding MGP_CASTEiJ_T0047737.1 MGP_CASTEiJ_G0023039.1 mouse_genomes_project 17 47874904 47884699 - MGP_CASTEiJ_P0047737 Ptcra protein_coding protein_coding MGP_CASTEiJ_T0045639.1 MGP_CASTEiJ_G0022504.1 mouse_genomes_project 17 22367684 22371932 - MGP_CASTEiJ_P0045639 Tceb2 protein_coding protein_coding MGP_CASTEiJ_T0045640.1 MGP_CASTEiJ_G0022504.1 mouse_genomes_project 17 22367811 22378100 - MGP_CASTEiJ_P0045640 Tceb2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047431.1 MGP_CASTEiJ_G0022923.1 mouse_genomes_project 17 37709450 37710485 + MGP_CASTEiJ_P0047431 Olfr107 protein_coding protein_coding MGP_CASTEiJ_T0046645.1 MGP_CASTEiJ_G0022750.1 mouse_genomes_project 17 32791175 32792223 + MGP_CASTEiJ_P0046645 protein_coding protein_coding MGP_CASTEiJ_T0009934.1 MGP_CASTEiJ_G0008122.1 mouse_genomes_project 17 35108824 35108885 + Mir6975 miRNA miRNA MGP_CASTEiJ_T0046855.1 MGP_CASTEiJ_G0022793.1 mouse_genomes_project 17 33938086 33943436 + MGP_CASTEiJ_P0046855 H2-Ab1 protein_coding protein_coding MGP_CASTEiJ_T0046856.1 MGP_CASTEiJ_G0022793.1 mouse_genomes_project 17 33941109 33942043 + H2-Ab1 protein_coding retained_intron MGP_CASTEiJ_T0046857.1 MGP_CASTEiJ_G0022793.1 mouse_genomes_project 17 33942280 33943412 + H2-Ab1 protein_coding retained_intron MGP_CASTEiJ_T0102117.1 MGP_CASTEiJ_G0038842.1 mouse_genomes_project 17 17308442 17309640 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0047732.1 MGP_CASTEiJ_G0023038.1 mouse_genomes_project 17 47855231 47871447 - MGP_CASTEiJ_P0047732 Cnpy3 protein_coding protein_coding MGP_CASTEiJ_T0047733.1 MGP_CASTEiJ_G0023038.1 mouse_genomes_project 17 47855282 47871430 - MGP_CASTEiJ_P0047733 Cnpy3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047734.1 MGP_CASTEiJ_G0023038.1 mouse_genomes_project 17 47856173 47857132 - Cnpy3 protein_coding retained_intron MGP_CASTEiJ_T0047735.1 MGP_CASTEiJ_G0023038.1 mouse_genomes_project 17 47864644 47871428 - MGP_CASTEiJ_P0047735 Cnpy3 protein_coding protein_coding MGP_CASTEiJ_T0047736.1 MGP_CASTEiJ_G0023038.1 mouse_genomes_project 17 47864876 47871410 - Cnpy3 protein_coding retained_intron MGP_CASTEiJ_T0046342.1 MGP_CASTEiJ_G0022673.1 mouse_genomes_project 17 27770114 27828505 + MGP_CASTEiJ_P0046342 Mapk14 protein_coding protein_coding MGP_CASTEiJ_T0046343.1 MGP_CASTEiJ_G0022673.1 mouse_genomes_project 17 27770114 27821252 + MGP_CASTEiJ_P0046343 Mapk14 protein_coding protein_coding MGP_CASTEiJ_T0046344.1 MGP_CASTEiJ_G0022673.1 mouse_genomes_project 17 27770212 27806993 + MGP_CASTEiJ_P0046344 Mapk14 protein_coding protein_coding MGP_CASTEiJ_T0046345.1 MGP_CASTEiJ_G0022673.1 mouse_genomes_project 17 27770512 27828510 + MGP_CASTEiJ_P0046345 Mapk14 protein_coding protein_coding MGP_CASTEiJ_T0046346.1 MGP_CASTEiJ_G0022673.1 mouse_genomes_project 17 27821706 27826468 + Mapk14 protein_coding retained_intron MGP_CASTEiJ_T0048295.1 MGP_CASTEiJ_G0023215.1 mouse_genomes_project 17 74206502 74253123 + MGP_CASTEiJ_P0048295 Wdr43 protein_coding protein_coding MGP_CASTEiJ_T0011092.1 MGP_CASTEiJ_G0009280.1 mouse_genomes_project 17 31501545 31501816 + Gm25883 misc_RNA misc_RNA MGP_CASTEiJ_T0016814.1 MGP_CASTEiJ_G0014658.1 mouse_genomes_project 17 29071125 29078095 + Gm16758 processed_transcript processed_transcript MGP_CASTEiJ_T0012843.1 MGP_CASTEiJ_G0011006.1 mouse_genomes_project 17 23034185 23040755 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046016.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24585873 24592251 - MGP_CASTEiJ_P0046016 protein_coding protein_coding MGP_CASTEiJ_T0046017.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24586241 24588551 - protein_coding retained_intron MGP_CASTEiJ_T0046018.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24586243 24591863 - protein_coding retained_intron MGP_CASTEiJ_T0046019.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24586677 24588004 - protein_coding retained_intron MGP_CASTEiJ_T0046020.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24587457 24589065 - protein_coding processed_transcript MGP_CASTEiJ_T0046021.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24588658 24589457 - protein_coding retained_intron MGP_CASTEiJ_T0046022.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24588739 24590546 - protein_coding retained_intron MGP_CASTEiJ_T0046023.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24588788 24589509 - protein_coding retained_intron MGP_CASTEiJ_T0046024.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24588962 24591706 - protein_coding retained_intron MGP_CASTEiJ_T0046025.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24588970 24590552 - protein_coding retained_intron MGP_CASTEiJ_T0046026.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24589007 24591718 - protein_coding retained_intron MGP_CASTEiJ_T0046027.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24589162 24591817 - MGP_CASTEiJ_P0046027 protein_coding protein_coding MGP_CASTEiJ_T0046028.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24589498 24591846 - protein_coding retained_intron MGP_CASTEiJ_T0046029.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24589654 24591925 - MGP_CASTEiJ_P0046029 protein_coding protein_coding MGP_CASTEiJ_T0046030.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24589658 24591969 - protein_coding processed_transcript MGP_CASTEiJ_T0046031.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24589784 24591942 - protein_coding processed_transcript MGP_CASTEiJ_T0046032.1 MGP_CASTEiJ_G0022602.1 mouse_genomes_project 17 24591174 24591930 - protein_coding retained_intron MGP_CASTEiJ_T0101739.1 MGP_CASTEiJ_G0038545.1 mouse_genomes_project 17 34231454 34240224 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0101740.1 MGP_CASTEiJ_G0038545.1 mouse_genomes_project 17 34235882 34276275 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101741.1 MGP_CASTEiJ_G0038545.1 mouse_genomes_project 17 34240141 34241687 - transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0003644.1 MGP_CASTEiJ_G0003286.1 mouse_genomes_project 17 45523142 45524326 + Runx2os3 antisense antisense MGP_CASTEiJ_T0047472.1 MGP_CASTEiJ_G0022957.1 mouse_genomes_project 17 39700277 39703624 - MGP_CASTEiJ_P0047472 Esp23 protein_coding protein_coding MGP_CASTEiJ_T0048073.1 MGP_CASTEiJ_G0023148.1 mouse_genomes_project 17 58733826 58779288 - MGP_CASTEiJ_P0048073 Mllt1 protein_coding protein_coding MGP_CASTEiJ_T0006772.1 MGP_CASTEiJ_G0005592.1 mouse_genomes_project 17 38128510 38131409 + Gm20524 lincRNA lincRNA MGP_CASTEiJ_T0011093.1 MGP_CASTEiJ_G0009281.1 mouse_genomes_project 17 32573044 32573319 - Gm25667 misc_RNA misc_RNA MGP_CASTEiJ_T0016812.1 MGP_CASTEiJ_G0014656.1 mouse_genomes_project 17 24680592 24698288 + Gm16278 processed_transcript processed_transcript MGP_CASTEiJ_T0047427.1 MGP_CASTEiJ_G0022920.1 mouse_genomes_project 17 37627768 37629903 - MGP_CASTEiJ_P0047427 protein_coding protein_coding MGP_CASTEiJ_T0045628.1 MGP_CASTEiJ_G0022503.1 mouse_genomes_project 17 22327553 22349852 + MGP_CASTEiJ_P0045628 Srrm2 protein_coding protein_coding MGP_CASTEiJ_T0045629.1 MGP_CASTEiJ_G0022503.1 mouse_genomes_project 17 22344518 22367681 + MGP_CASTEiJ_P0045629 Srrm2 protein_coding protein_coding MGP_CASTEiJ_T0045630.1 MGP_CASTEiJ_G0022503.1 mouse_genomes_project 17 22344552 22367686 + MGP_CASTEiJ_P0045630 Srrm2 protein_coding protein_coding MGP_CASTEiJ_T0045631.1 MGP_CASTEiJ_G0022503.1 mouse_genomes_project 17 22348263 22353116 + MGP_CASTEiJ_P0045631 Srrm2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045632.1 MGP_CASTEiJ_G0022503.1 mouse_genomes_project 17 22349251 22351351 + MGP_CASTEiJ_P0045632 Srrm2 protein_coding protein_coding MGP_CASTEiJ_T0045633.1 MGP_CASTEiJ_G0022503.1 mouse_genomes_project 17 22349431 22350042 + Srrm2 protein_coding retained_intron MGP_CASTEiJ_T0045634.1 MGP_CASTEiJ_G0022503.1 mouse_genomes_project 17 22352996 22353926 + MGP_CASTEiJ_P0045634 Srrm2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045635.1 MGP_CASTEiJ_G0022503.1 mouse_genomes_project 17 22353224 22357818 + Srrm2 protein_coding retained_intron MGP_CASTEiJ_T0045636.1 MGP_CASTEiJ_G0022503.1 mouse_genomes_project 17 22360633 22363854 + Srrm2 protein_coding processed_transcript MGP_CASTEiJ_T0045637.1 MGP_CASTEiJ_G0022503.1 mouse_genomes_project 17 22362712 22363986 + MGP_CASTEiJ_P0045637 Srrm2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045638.1 MGP_CASTEiJ_G0022503.1 mouse_genomes_project 17 22364850 22365653 + Srrm2 protein_coding retained_intron MGP_CASTEiJ_T0047794.1 MGP_CASTEiJ_G0023058.1 mouse_genomes_project 17 48841229 48895763 + MGP_CASTEiJ_P0047794 Usp49 protein_coding protein_coding MGP_CASTEiJ_T0047795.1 MGP_CASTEiJ_G0023058.1 mouse_genomes_project 17 48860042 48881224 + MGP_CASTEiJ_P0047795 Usp49 protein_coding protein_coding MGP_CASTEiJ_T0047796.1 MGP_CASTEiJ_G0023058.1 mouse_genomes_project 17 48881759 48890082 + MGP_CASTEiJ_P0047796 Usp49 protein_coding protein_coding MGP_CASTEiJ_T0047797.1 MGP_CASTEiJ_G0023058.1 mouse_genomes_project 17 48882340 48889754 + MGP_CASTEiJ_P0047797 Usp49 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0098852.1 MGP_CASTEiJ_G0035777.1 mouse_genomes_project 17 76339884 76344595 - D630014O11Rik sense_intronic sense_intronic MGP_CASTEiJ_T0046985.1 MGP_CASTEiJ_G0022819.1 mouse_genomes_project 17 34680602 34708187 - MGP_CASTEiJ_P0046985 protein_coding protein_coding MGP_CASTEiJ_T0046986.1 MGP_CASTEiJ_G0022819.1 mouse_genomes_project 17 34680616 34698096 - MGP_CASTEiJ_P0046986 protein_coding protein_coding MGP_CASTEiJ_T0045389.1 MGP_CASTEiJ_G0022402.1 mouse_genomes_project 17 10702832 11394376 + MGP_CASTEiJ_P0045389 Sod2 protein_coding protein_coding MGP_CASTEiJ_T0045390.1 MGP_CASTEiJ_G0022402.1 mouse_genomes_project 17 10702995 10710642 + MGP_CASTEiJ_P0045390 Sod2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048059.1 MGP_CASTEiJ_G0023139.1 mouse_genomes_project 17 58501364 58541986 + MGP_CASTEiJ_P0048059 Ranbp3 protein_coding protein_coding MGP_CASTEiJ_T0048060.1 MGP_CASTEiJ_G0023139.1 mouse_genomes_project 17 58501529 58541990 + MGP_CASTEiJ_P0048060 Ranbp3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048440.1 MGP_CASTEiJ_G0023275.1 mouse_genomes_project 17 86474481 86485375 + MGP_CASTEiJ_P0048440 Pkdcc protein_coding protein_coding MGP_CASTEiJ_T0048441.1 MGP_CASTEiJ_G0023275.1 mouse_genomes_project 17 86479283 86482115 + Pkdcc protein_coding processed_transcript MGP_CASTEiJ_T0048442.1 MGP_CASTEiJ_G0023275.1 mouse_genomes_project 17 86479283 86484591 + MGP_CASTEiJ_P0048442 Pkdcc protein_coding protein_coding MGP_CASTEiJ_T0048443.1 MGP_CASTEiJ_G0023275.1 mouse_genomes_project 17 86481406 86484904 + Pkdcc protein_coding processed_transcript MGP_CASTEiJ_T0003606.1 MGP_CASTEiJ_G0003259.1 mouse_genomes_project 17 25399108 25406301 - 1700049J03Rik antisense antisense MGP_CASTEiJ_T0046423.1 MGP_CASTEiJ_G0022689.1 mouse_genomes_project 17 28489995 28509203 + MGP_CASTEiJ_P0046423 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046424.1 MGP_CASTEiJ_G0022689.1 mouse_genomes_project 17 28490013 28494144 + protein_coding processed_transcript MGP_CASTEiJ_T0046425.1 MGP_CASTEiJ_G0022689.1 mouse_genomes_project 17 28490023 28496081 + protein_coding retained_intron MGP_CASTEiJ_T0046426.1 MGP_CASTEiJ_G0022689.1 mouse_genomes_project 17 28490023 28509096 + MGP_CASTEiJ_P0046426 protein_coding protein_coding MGP_CASTEiJ_T0046427.1 MGP_CASTEiJ_G0022689.1 mouse_genomes_project 17 28494521 28497036 + protein_coding retained_intron MGP_CASTEiJ_T0046428.1 MGP_CASTEiJ_G0022689.1 mouse_genomes_project 17 28498041 28504068 + protein_coding retained_intron MGP_CASTEiJ_T0046429.1 MGP_CASTEiJ_G0022689.1 mouse_genomes_project 17 28498053 28503446 + protein_coding retained_intron MGP_CASTEiJ_T0046430.1 MGP_CASTEiJ_G0022689.1 mouse_genomes_project 17 28506059 28507990 + protein_coding processed_transcript MGP_CASTEiJ_T0046485.1 MGP_CASTEiJ_G0022709.1 mouse_genomes_project 17 30567869 30586409 - MGP_CASTEiJ_P0046485 Tmprss3 protein_coding protein_coding MGP_CASTEiJ_T0046486.1 MGP_CASTEiJ_G0022709.1 mouse_genomes_project 17 30567869 30587617 - MGP_CASTEiJ_P0046486 Tmprss3 protein_coding protein_coding MGP_CASTEiJ_T0047940.1 MGP_CASTEiJ_G0023094.1 mouse_genomes_project 17 55148578 55176006 + MGP_CASTEiJ_P0047940 Rab5a protein_coding protein_coding MGP_CASTEiJ_T0006796.1 MGP_CASTEiJ_G0005606.1 mouse_genomes_project 17 71891389 71896589 + C030034I22Rik lincRNA lincRNA MGP_CASTEiJ_T0006797.1 MGP_CASTEiJ_G0005606.1 mouse_genomes_project 17 71891448 71892926 + C030034I22Rik lincRNA lincRNA MGP_CASTEiJ_T0048127.1 MGP_CASTEiJ_G0023175.1 mouse_genomes_project 17 65241506 65697132 - MGP_CASTEiJ_P0048127 Fbxl17 protein_coding protein_coding MGP_CASTEiJ_T0048128.1 MGP_CASTEiJ_G0023175.1 mouse_genomes_project 17 65241835 65644774 - Fbxl17 protein_coding processed_transcript MGP_CASTEiJ_T0048129.1 MGP_CASTEiJ_G0023175.1 mouse_genomes_project 17 65241835 65688556 - MGP_CASTEiJ_P0048129 Fbxl17 protein_coding protein_coding MGP_CASTEiJ_T0048130.1 MGP_CASTEiJ_G0023175.1 mouse_genomes_project 17 65242991 65640357 - Fbxl17 protein_coding processed_transcript MGP_CASTEiJ_T0048131.1 MGP_CASTEiJ_G0023175.1 mouse_genomes_project 17 65568635 65675443 - Fbxl17 protein_coding processed_transcript MGP_CASTEiJ_T0048132.1 MGP_CASTEiJ_G0023175.1 mouse_genomes_project 17 65664774 65696982 - MGP_CASTEiJ_P0048132 Fbxl17 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047363.1 MGP_CASTEiJ_G0022896.1 mouse_genomes_project 17 37125434 37133680 + MGP_CASTEiJ_P0047363 Trim10 protein_coding protein_coding MGP_CASTEiJ_T0047743.1 MGP_CASTEiJ_G0023044.1 mouse_genomes_project 17 48033135 48034978 + MGP_CASTEiJ_P0047743 Tbcc protein_coding protein_coding MGP_CASTEiJ_T0045327.1 MGP_CASTEiJ_G0022383.1 mouse_genomes_project 17 6460062 6482794 + MGP_CASTEiJ_P0045327 1700010I14Rik protein_coding protein_coding MGP_CASTEiJ_T0045328.1 MGP_CASTEiJ_G0022383.1 mouse_genomes_project 17 6460086 6482793 + MGP_CASTEiJ_P0045328 1700010I14Rik protein_coding protein_coding MGP_CASTEiJ_T0045329.1 MGP_CASTEiJ_G0022383.1 mouse_genomes_project 17 6460112 6479014 + 1700010I14Rik protein_coding processed_transcript MGP_CASTEiJ_T0046701.1 MGP_CASTEiJ_G0022764.1 mouse_genomes_project 17 33390379 33398215 - MGP_CASTEiJ_P0046701 Angptl4 protein_coding protein_coding MGP_CASTEiJ_T0046702.1 MGP_CASTEiJ_G0022764.1 mouse_genomes_project 17 33391541 33398183 - MGP_CASTEiJ_P0046702 Angptl4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046703.1 MGP_CASTEiJ_G0022764.1 mouse_genomes_project 17 33393602 33395105 - Angptl4 protein_coding retained_intron MGP_CASTEiJ_T0046704.1 MGP_CASTEiJ_G0022764.1 mouse_genomes_project 17 33393643 33395783 - Angptl4 protein_coding processed_transcript MGP_CASTEiJ_T0009929.1 MGP_CASTEiJ_G0008117.1 mouse_genomes_project 17 34665975 34666038 - Mir6971 miRNA miRNA MGP_CASTEiJ_T0046404.1 MGP_CASTEiJ_G0022685.1 mouse_genomes_project 17 28373619 28387095 - MGP_CASTEiJ_P0046404 Ppil1 protein_coding protein_coding MGP_CASTEiJ_T0046405.1 MGP_CASTEiJ_G0022685.1 mouse_genomes_project 17 28374040 28379691 - Ppil1 protein_coding retained_intron MGP_CASTEiJ_T0046406.1 MGP_CASTEiJ_G0022685.1 mouse_genomes_project 17 28374079 28386849 - MGP_CASTEiJ_P0046406 Ppil1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046407.1 MGP_CASTEiJ_G0022685.1 mouse_genomes_project 17 28384047 28386875 - Ppil1 protein_coding processed_transcript MGP_CASTEiJ_T0045439.1 MGP_CASTEiJ_G0022417.1 mouse_genomes_project 17 13051002 13089068 + MGP_CASTEiJ_P0045439 Fam120b protein_coding protein_coding MGP_CASTEiJ_T0046667.1 MGP_CASTEiJ_G0022758.1 mouse_genomes_project 17 33163254 33217955 + MGP_CASTEiJ_P0046667 Myo1f protein_coding protein_coding MGP_CASTEiJ_T0046668.1 MGP_CASTEiJ_G0022758.1 mouse_genomes_project 17 33163280 33217951 + MGP_CASTEiJ_P0046668 Myo1f protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046669.1 MGP_CASTEiJ_G0022758.1 mouse_genomes_project 17 33163300 33184741 + MGP_CASTEiJ_P0046669 Myo1f protein_coding protein_coding MGP_CASTEiJ_T0046670.1 MGP_CASTEiJ_G0022758.1 mouse_genomes_project 17 33189213 33217957 + Myo1f protein_coding retained_intron MGP_CASTEiJ_T0099527.1 MGP_CASTEiJ_G0036440.1 mouse_genomes_project 17 32393186 32393350 - Gm23294 snRNA snRNA MGP_CASTEiJ_T0012870.1 MGP_CASTEiJ_G0011033.1 mouse_genomes_project 17 38285333 38285827 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048080.1 MGP_CASTEiJ_G0023153.1 mouse_genomes_project 17 58859133 58867116 - MGP_CASTEiJ_P0048080 Gtf2f1 protein_coding protein_coding MGP_CASTEiJ_T0047847.1 MGP_CASTEiJ_G0023068.1 mouse_genomes_project 17 49356347 49357644 + MGP_CASTEiJ_P0047847 1700067P10Rik protein_coding protein_coding MGP_CASTEiJ_T0047106.1 MGP_CASTEiJ_G0022844.1 mouse_genomes_project 17 34972939 34973477 + D17H6S53E protein_coding retained_intron MGP_CASTEiJ_T0047107.1 MGP_CASTEiJ_G0022844.1 mouse_genomes_project 17 34972952 34975381 + MGP_CASTEiJ_P0047107 D17H6S53E protein_coding protein_coding MGP_CASTEiJ_T0048315.1 MGP_CASTEiJ_G0023223.1 mouse_genomes_project 17 75976165 76074078 - MGP_CASTEiJ_P0048315 Capn13 protein_coding protein_coding MGP_CASTEiJ_T0046469.1 MGP_CASTEiJ_G0022699.1 mouse_genomes_project 17 29201250 29411569 + MGP_CASTEiJ_P0046469 Zfand3 protein_coding protein_coding MGP_CASTEiJ_T0046470.1 MGP_CASTEiJ_G0022699.1 mouse_genomes_project 17 29201368 29412381 + MGP_CASTEiJ_P0046470 Zfand3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0046193.1 MGP_CASTEiJ_G0022639.1 mouse_genomes_project 17 25894381 25903562 - MGP_CASTEiJ_P0046193 Bak1 protein_coding protein_coding MGP_CASTEiJ_T0046194.1 MGP_CASTEiJ_G0022639.1 mouse_genomes_project 17 25894383 25903131 - MGP_CASTEiJ_P0046194 Bak1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046195.1 MGP_CASTEiJ_G0022639.1 mouse_genomes_project 17 25895237 25897334 - MGP_CASTEiJ_P0046195 Bak1 protein_coding protein_coding MGP_CASTEiJ_T0046196.1 MGP_CASTEiJ_G0022639.1 mouse_genomes_project 17 25897123 25903140 - Bak1 protein_coding processed_transcript MGP_CASTEiJ_T0048400.1 MGP_CASTEiJ_G0023254.1 mouse_genomes_project 17 82715655 82779141 + MGP_CASTEiJ_P0048400 Rmdn2 protein_coding protein_coding MGP_CASTEiJ_T0009910.1 MGP_CASTEiJ_G0008098.1 mouse_genomes_project 17 24525312 24525384 + Mir6966 miRNA miRNA MGP_CASTEiJ_T0047314.1 MGP_CASTEiJ_G0022882.1 mouse_genomes_project 17 36083242 36096579 + MGP_CASTEiJ_P0047314 Gnl1 protein_coding protein_coding MGP_CASTEiJ_T0047315.1 MGP_CASTEiJ_G0022882.1 mouse_genomes_project 17 36083559 36095880 + MGP_CASTEiJ_P0047315 Gnl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047316.1 MGP_CASTEiJ_G0022882.1 mouse_genomes_project 17 36085420 36088351 + Gnl1 protein_coding retained_intron MGP_CASTEiJ_T0006751.1 MGP_CASTEiJ_G0005574.1 mouse_genomes_project 17 30998310 31000253 + 4833413E03Rik lincRNA lincRNA MGP_CASTEiJ_T0006752.1 MGP_CASTEiJ_G0005574.1 mouse_genomes_project 17 30999335 31000256 + 4833413E03Rik lincRNA lincRNA MGP_CASTEiJ_T0045726.1 MGP_CASTEiJ_G0022529.1 mouse_genomes_project 17 23091850 23097370 - MGP_CASTEiJ_P0045726 Mlst8 protein_coding protein_coding MGP_CASTEiJ_T0045727.1 MGP_CASTEiJ_G0022529.1 mouse_genomes_project 17 23091850 23097370 - MGP_CASTEiJ_P0045727 Mlst8 protein_coding protein_coding MGP_CASTEiJ_T0045510.1 MGP_CASTEiJ_G0022445.1 mouse_genomes_project 17 18142123 18174268 - MGP_CASTEiJ_P0045510 Vmn2r105 protein_coding protein_coding MGP_CASTEiJ_T0046850.1 MGP_CASTEiJ_G0022791.1 mouse_genomes_project 17 33892221 33895373 - MGP_CASTEiJ_P0046850 Gm15821 protein_coding protein_coding MGP_CASTEiJ_T0006786.1 MGP_CASTEiJ_G0005600.1 mouse_genomes_project 17 53793110 53807466 + Gm19585 lincRNA lincRNA MGP_CASTEiJ_T0006787.1 MGP_CASTEiJ_G0005600.1 mouse_genomes_project 17 53804517 53807261 + Gm19585 lincRNA lincRNA MGP_CASTEiJ_T0099531.1 MGP_CASTEiJ_G0036444.1 mouse_genomes_project 17 35767876 35767983 - Gm23864 snRNA snRNA MGP_CASTEiJ_T0047432.1 MGP_CASTEiJ_G0022924.1 mouse_genomes_project 17 37736698 37737736 + MGP_CASTEiJ_P0047432 protein_coding protein_coding MGP_CASTEiJ_T0046537.1 MGP_CASTEiJ_G0022718.1 mouse_genomes_project 17 31100687 31114264 - MGP_CASTEiJ_P0046537 U2af1 protein_coding protein_coding MGP_CASTEiJ_T0046538.1 MGP_CASTEiJ_G0022718.1 mouse_genomes_project 17 31100687 31114264 - MGP_CASTEiJ_P0046538 U2af1 protein_coding protein_coding MGP_CASTEiJ_T0048255.1 MGP_CASTEiJ_G0023207.1 mouse_genomes_project 17 73532429 73547124 - MGP_CASTEiJ_P0048255 Myl12a protein_coding protein_coding MGP_CASTEiJ_T0048256.1 MGP_CASTEiJ_G0023207.1 mouse_genomes_project 17 73535181 73537788 - MGP_CASTEiJ_P0048256 Myl12a protein_coding protein_coding MGP_CASTEiJ_T0048257.1 MGP_CASTEiJ_G0023207.1 mouse_genomes_project 17 73535190 73546735 - Myl12a protein_coding retained_intron MGP_CASTEiJ_T0048258.1 MGP_CASTEiJ_G0023207.1 mouse_genomes_project 17 73535190 73541981 - MGP_CASTEiJ_P0048258 Myl12a protein_coding protein_coding MGP_CASTEiJ_T0048259.1 MGP_CASTEiJ_G0023207.1 mouse_genomes_project 17 73537025 73546757 - MGP_CASTEiJ_P0048259 Myl12a protein_coding protein_coding MGP_CASTEiJ_T0048260.1 MGP_CASTEiJ_G0023207.1 mouse_genomes_project 17 73537276 73546730 - Myl12a protein_coding retained_intron MGP_CASTEiJ_T0048261.1 MGP_CASTEiJ_G0023207.1 mouse_genomes_project 17 73540674 73546587 - MGP_CASTEiJ_P0048261 Myl12a protein_coding protein_coding MGP_CASTEiJ_T0048075.1 MGP_CASTEiJ_G0023150.1 mouse_genomes_project 17 58846009 58852031 + MGP_CASTEiJ_P0048075 Clpp protein_coding protein_coding MGP_CASTEiJ_T0009942.1 MGP_CASTEiJ_G0008130.1 mouse_genomes_project 17 57957668 57957781 - Gm44397 miRNA miRNA MGP_CASTEiJ_T0048487.1 MGP_CASTEiJ_G0023291.1 mouse_genomes_project 17 88545771 88933267 + MGP_CASTEiJ_P0048487 Camkmt protein_coding protein_coding MGP_CASTEiJ_T0009916.1 MGP_CASTEiJ_G0008104.1 mouse_genomes_project 17 25975089 25975156 + Mir7677 miRNA miRNA MGP_CASTEiJ_T0047478.1 MGP_CASTEiJ_G0022963.1 mouse_genomes_project 17 41288708 41292833 + MGP_CASTEiJ_P0047478 Esp6 protein_coding protein_coding MGP_CASTEiJ_T0048485.1 MGP_CASTEiJ_G0023290.1 mouse_genomes_project 17 88518367 88545313 - MGP_CASTEiJ_P0048485 Prepl protein_coding protein_coding MGP_CASTEiJ_T0048486.1 MGP_CASTEiJ_G0023290.1 mouse_genomes_project 17 88518367 88545313 - MGP_CASTEiJ_P0048486 Prepl protein_coding protein_coding MGP_CASTEiJ_T0048122.1 MGP_CASTEiJ_G0023173.1 mouse_genomes_project 17 60885805 60900307 - MGP_CASTEiJ_P0048122 Nudt12 protein_coding protein_coding MGP_CASTEiJ_T0048123.1 MGP_CASTEiJ_G0023173.1 mouse_genomes_project 17 60885977 60890642 - Nudt12 protein_coding retained_intron MGP_CASTEiJ_T0048124.1 MGP_CASTEiJ_G0023173.1 mouse_genomes_project 17 60893323 60900203 - MGP_CASTEiJ_P0048124 Nudt12 protein_coding protein_coding MGP_CASTEiJ_T0047480.1 MGP_CASTEiJ_G0022965.1 mouse_genomes_project 17 41326187 41330211 + MGP_CASTEiJ_P0047480 Esp4 protein_coding protein_coding MGP_CASTEiJ_T0048438.1 MGP_CASTEiJ_G0023273.1 mouse_genomes_project 17 84677028 84677189 + MGP_CASTEiJ_P0048438 Gm11096 protein_coding protein_coding MGP_CASTEiJ_T0000940.1 MGP_CASTEiJ_G0000877.1 mouse_genomes_project 17 8822969 8827975 + TEC TEC MGP_CASTEiJ_T0046440.1 MGP_CASTEiJ_G0022695.1 mouse_genomes_project 17 28770869 28864812 + MGP_CASTEiJ_P0046440 Gm28043 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048419.1 MGP_CASTEiJ_G0023263.1 mouse_genomes_project 17 83412008 83462936 - MGP_CASTEiJ_P0048419 Dhx57 protein_coding protein_coding MGP_CASTEiJ_T0048420.1 MGP_CASTEiJ_G0023263.1 mouse_genomes_project 17 83412008 83462936 - MGP_CASTEiJ_P0048420 Dhx57 protein_coding protein_coding MGP_CASTEiJ_T0048207.1 MGP_CASTEiJ_G0023198.1 mouse_genomes_project 17 70234884 70296745 - MGP_CASTEiJ_P0048207 Arhgap28 protein_coding protein_coding MGP_CASTEiJ_T0048208.1 MGP_CASTEiJ_G0023198.1 mouse_genomes_project 17 70234912 70421864 - MGP_CASTEiJ_P0048208 Arhgap28 protein_coding protein_coding MGP_CASTEiJ_T0048209.1 MGP_CASTEiJ_G0023198.1 mouse_genomes_project 17 70250850 70270742 - MGP_CASTEiJ_P0048209 Arhgap28 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048210.1 MGP_CASTEiJ_G0023198.1 mouse_genomes_project 17 70262442 70291735 - MGP_CASTEiJ_P0048210 Arhgap28 protein_coding protein_coding MGP_CASTEiJ_T0048064.1 MGP_CASTEiJ_G0023142.1 mouse_genomes_project 17 58582605 58588805 - MGP_CASTEiJ_P0048064 Nrtn protein_coding protein_coding MGP_CASTEiJ_T0048493.1 MGP_CASTEiJ_G0023294.1 mouse_genomes_project 17 89512671 89683808 - MGP_CASTEiJ_P0048493 Srbd1 protein_coding protein_coding MGP_CASTEiJ_T0045644.1 MGP_CASTEiJ_G0022506.1 mouse_genomes_project 17 22379589 22386966 - MGP_CASTEiJ_P0045644 Prss41 protein_coding protein_coding MGP_CASTEiJ_T0045645.1 MGP_CASTEiJ_G0022506.1 mouse_genomes_project 17 22383926 22387001 - MGP_CASTEiJ_P0045645 Prss41 protein_coding protein_coding MGP_CASTEiJ_T0045646.1 MGP_CASTEiJ_G0022506.1 mouse_genomes_project 17 22385064 22386978 - Prss41 protein_coding retained_intron MGP_CASTEiJ_T0046140.1 MGP_CASTEiJ_G0022625.1 mouse_genomes_project 17 25108232 25109120 - MGP_CASTEiJ_P0046140 protein_coding protein_coding MGP_CASTEiJ_T0045794.1 MGP_CASTEiJ_G0022546.1 mouse_genomes_project 17 23384173 23386533 - Ndufb10 protein_coding retained_intron MGP_CASTEiJ_T0045795.1 MGP_CASTEiJ_G0022546.1 mouse_genomes_project 17 23384173 23385020 - Ndufb10 protein_coding retained_intron MGP_CASTEiJ_T0045796.1 MGP_CASTEiJ_G0022546.1 mouse_genomes_project 17 23384173 23384763 - Ndufb10 protein_coding retained_intron MGP_CASTEiJ_T0045797.1 MGP_CASTEiJ_G0022546.1 mouse_genomes_project 17 23384173 23386591 - MGP_CASTEiJ_P0045797 Ndufb10 protein_coding protein_coding MGP_CASTEiJ_T0045798.1 MGP_CASTEiJ_G0022546.1 mouse_genomes_project 17 23384518 23386525 - MGP_CASTEiJ_P0045798 Ndufb10 protein_coding protein_coding MGP_CASTEiJ_T0045799.1 MGP_CASTEiJ_G0022546.1 mouse_genomes_project 17 23384795 23386507 - Ndufb10 protein_coding processed_transcript MGP_CASTEiJ_T0046103.1 MGP_CASTEiJ_G0022619.1 mouse_genomes_project 17 24998268 25001357 - MGP_CASTEiJ_P0046103 Pdia2 protein_coding protein_coding MGP_CASTEiJ_T0046104.1 MGP_CASTEiJ_G0022619.1 mouse_genomes_project 17 24998275 24999186 - MGP_CASTEiJ_P0046104 Pdia2 protein_coding protein_coding MGP_CASTEiJ_T0046105.1 MGP_CASTEiJ_G0022619.1 mouse_genomes_project 17 24998294 25001332 - MGP_CASTEiJ_P0046105 Pdia2 protein_coding protein_coding MGP_CASTEiJ_T0046107.1 MGP_CASTEiJ_G0022619.1 mouse_genomes_project 17 24999763 25001278 - MGP_CASTEiJ_P0046107 Pdia2 protein_coding protein_coding MGP_CASTEiJ_T0000947.1 MGP_CASTEiJ_G0000883.1 mouse_genomes_project 17 53370184 53373347 - TEC TEC MGP_CASTEiJ_T0011109.1 MGP_CASTEiJ_G0009297.1 mouse_genomes_project 17 89110205 89110528 + Gm27283 misc_RNA misc_RNA MGP_CASTEiJ_T0012831.1 MGP_CASTEiJ_G0010994.1 mouse_genomes_project 17 9136701 9136995 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046546.1 MGP_CASTEiJ_G0022722.1 mouse_genomes_project 17 31509711 31536605 + MGP_CASTEiJ_P0046546 Rrp1b protein_coding protein_coding MGP_CASTEiJ_T0046547.1 MGP_CASTEiJ_G0022722.1 mouse_genomes_project 17 31510014 31521736 + Rrp1b protein_coding retained_intron MGP_CASTEiJ_T0046548.1 MGP_CASTEiJ_G0022722.1 mouse_genomes_project 17 31510040 31521729 + MGP_CASTEiJ_P0046548 Rrp1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046549.1 MGP_CASTEiJ_G0022722.1 mouse_genomes_project 17 31510057 31534077 + MGP_CASTEiJ_P0046549 Rrp1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0046550.1 MGP_CASTEiJ_G0022722.1 mouse_genomes_project 17 31522098 31536596 + Rrp1b protein_coding retained_intron MGP_CASTEiJ_T0046551.1 MGP_CASTEiJ_G0022722.1 mouse_genomes_project 17 31522618 31525540 + Rrp1b protein_coding retained_intron MGP_CASTEiJ_T0046552.1 MGP_CASTEiJ_G0022722.1 mouse_genomes_project 17 31523828 31525419 + Rrp1b protein_coding retained_intron MGP_CASTEiJ_T0046553.1 MGP_CASTEiJ_G0022722.1 mouse_genomes_project 17 31525543 31530364 + MGP_CASTEiJ_P0046553 Rrp1b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046554.1 MGP_CASTEiJ_G0022722.1 mouse_genomes_project 17 31526011 31530377 + Rrp1b protein_coding retained_intron MGP_CASTEiJ_T0046555.1 MGP_CASTEiJ_G0022722.1 mouse_genomes_project 17 31529650 31530793 + Rrp1b protein_coding processed_transcript MGP_CASTEiJ_T0046556.1 MGP_CASTEiJ_G0022722.1 mouse_genomes_project 17 31532051 31534314 + Rrp1b protein_coding retained_intron MGP_CASTEiJ_T0046557.1 MGP_CASTEiJ_G0022722.1 mouse_genomes_project 17 31532904 31534407 + Rrp1b protein_coding retained_intron MGP_CASTEiJ_T0046739.1 MGP_CASTEiJ_G0022770.1 mouse_genomes_project 17 33520583 33526949 + MGP_CASTEiJ_P0046739 Tapbp protein_coding protein_coding MGP_CASTEiJ_T0046742.1 MGP_CASTEiJ_G0022770.1 mouse_genomes_project 17 33525872 33536743 + MGP_CASTEiJ_P0046742 Tapbp protein_coding protein_coding MGP_CASTEiJ_T0046743.1 MGP_CASTEiJ_G0022770.1 mouse_genomes_project 17 33526052 33526909 + Tapbp protein_coding retained_intron MGP_CASTEiJ_T0046744.1 MGP_CASTEiJ_G0022770.1 mouse_genomes_project 17 33527061 33533642 + Tapbp protein_coding processed_transcript MGP_CASTEiJ_T0046745.1 MGP_CASTEiJ_G0022770.1 mouse_genomes_project 17 33533562 33535732 + Tapbp protein_coding retained_intron MGP_CASTEiJ_T0012903.1 MGP_CASTEiJ_G0011066.1 mouse_genomes_project 17 79166100 79166484 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048018.1 MGP_CASTEiJ_G0023131.1 mouse_genomes_project 17 58228811 58277773 - MGP_CASTEiJ_P0048018 Ptprs protein_coding protein_coding MGP_CASTEiJ_T0048019.1 MGP_CASTEiJ_G0023131.1 mouse_genomes_project 17 58228813 58291833 - MGP_CASTEiJ_P0048019 Ptprs protein_coding protein_coding MGP_CASTEiJ_T0048020.1 MGP_CASTEiJ_G0023131.1 mouse_genomes_project 17 58238613 58291719 - Ptprs protein_coding processed_transcript MGP_CASTEiJ_T0048021.1 MGP_CASTEiJ_G0023131.1 mouse_genomes_project 17 58241145 58291802 - MGP_CASTEiJ_P0048021 Ptprs protein_coding unknown_likely_coding MGP_CASTEiJ_T0047752.1 MGP_CASTEiJ_G0023048.1 mouse_genomes_project 17 48536180 48546050 + MGP_CASTEiJ_P0047752 Mrps10 protein_coding protein_coding MGP_CASTEiJ_T0047753.1 MGP_CASTEiJ_G0023048.1 mouse_genomes_project 17 48536184 48546052 + MGP_CASTEiJ_P0047753 Mrps10 protein_coding protein_coding MGP_CASTEiJ_T0047754.1 MGP_CASTEiJ_G0023048.1 mouse_genomes_project 17 48536185 48543304 + Mrps10 protein_coding retained_intron MGP_CASTEiJ_T0047755.1 MGP_CASTEiJ_G0023048.1 mouse_genomes_project 17 48536186 48542423 + MGP_CASTEiJ_P0047755 Mrps10 protein_coding protein_coding MGP_CASTEiJ_T0047756.1 MGP_CASTEiJ_G0023048.1 mouse_genomes_project 17 48536191 48543348 + Mrps10 protein_coding retained_intron MGP_CASTEiJ_T0047757.1 MGP_CASTEiJ_G0023048.1 mouse_genomes_project 17 48536490 48546050 + MGP_CASTEiJ_P0047757 Mrps10 protein_coding protein_coding MGP_CASTEiJ_T0047758.1 MGP_CASTEiJ_G0023048.1 mouse_genomes_project 17 48536490 48546049 + MGP_CASTEiJ_P0047758 Mrps10 protein_coding protein_coding MGP_CASTEiJ_T0047759.1 MGP_CASTEiJ_G0023048.1 mouse_genomes_project 17 48537466 48545174 + Mrps10 protein_coding retained_intron MGP_CASTEiJ_T0047760.1 MGP_CASTEiJ_G0023048.1 mouse_genomes_project 17 48539072 48545194 + Mrps10 protein_coding processed_transcript MGP_CASTEiJ_T0047761.1 MGP_CASTEiJ_G0023048.1 mouse_genomes_project 17 48539831 48540712 + Mrps10 protein_coding retained_intron MGP_CASTEiJ_T0047762.1 MGP_CASTEiJ_G0023048.1 mouse_genomes_project 17 48542827 48548712 + Mrps10 protein_coding retained_intron MGP_CASTEiJ_T0102133.1 MGP_CASTEiJ_G0038858.1 mouse_genomes_project 17 21535156 21535601 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045931.1 MGP_CASTEiJ_G0022577.1 mouse_genomes_project 17 24021113 24026163 + MGP_CASTEiJ_P0045931 Prss29 protein_coding protein_coding MGP_CASTEiJ_T0012851.1 MGP_CASTEiJ_G0011014.1 mouse_genomes_project 17 34345039 34345447 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046862.1 MGP_CASTEiJ_G0022795.1 mouse_genomes_project 17 33980469 33991715 + MGP_CASTEiJ_P0046862 H2-Eb1 protein_coding protein_coding MGP_CASTEiJ_T0046655.1 MGP_CASTEiJ_G0022757.1 mouse_genomes_project 17 33130814 33161384 + MGP_CASTEiJ_P0046655 Adamts10 protein_coding protein_coding MGP_CASTEiJ_T0046656.1 MGP_CASTEiJ_G0022757.1 mouse_genomes_project 17 33130814 33161384 + MGP_CASTEiJ_P0046656 Adamts10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046657.1 MGP_CASTEiJ_G0022757.1 mouse_genomes_project 17 33130819 33161383 + MGP_CASTEiJ_P0046657 Adamts10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046658.1 MGP_CASTEiJ_G0022757.1 mouse_genomes_project 17 33130820 33135751 + Adamts10 protein_coding retained_intron MGP_CASTEiJ_T0046659.1 MGP_CASTEiJ_G0022757.1 mouse_genomes_project 17 33130836 33161384 + MGP_CASTEiJ_P0046659 Adamts10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046660.1 MGP_CASTEiJ_G0022757.1 mouse_genomes_project 17 33134900 33161064 + MGP_CASTEiJ_P0046660 Adamts10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046661.1 MGP_CASTEiJ_G0022757.1 mouse_genomes_project 17 33134900 33161064 + MGP_CASTEiJ_P0046661 Adamts10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046662.1 MGP_CASTEiJ_G0022757.1 mouse_genomes_project 17 33138208 33161383 + MGP_CASTEiJ_P0046662 Adamts10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046663.1 MGP_CASTEiJ_G0022757.1 mouse_genomes_project 17 33138317 33149991 + Adamts10 protein_coding processed_transcript MGP_CASTEiJ_T0046664.1 MGP_CASTEiJ_G0022757.1 mouse_genomes_project 17 33143933 33161384 + Adamts10 protein_coding retained_intron MGP_CASTEiJ_T0046665.1 MGP_CASTEiJ_G0022757.1 mouse_genomes_project 17 33144308 33161386 + Adamts10 protein_coding retained_intron MGP_CASTEiJ_T0046666.1 MGP_CASTEiJ_G0022757.1 mouse_genomes_project 17 33150291 33161398 + Adamts10 protein_coding retained_intron MGP_CASTEiJ_T0048367.1 MGP_CASTEiJ_G0023240.1 mouse_genomes_project 17 81382691 81423890 - MGP_CASTEiJ_P0048367 Fez2 protein_coding protein_coding MGP_CASTEiJ_T0048368.1 MGP_CASTEiJ_G0023240.1 mouse_genomes_project 17 81382691 81423890 - MGP_CASTEiJ_P0048368 Fez2 protein_coding protein_coding MGP_CASTEiJ_T0006788.1 MGP_CASTEiJ_G0005601.1 mouse_genomes_project 17 56105695 56126467 - 1700025K24Rik lincRNA lincRNA MGP_CASTEiJ_T0009900.1 MGP_CASTEiJ_G0008088.1 mouse_genomes_project 17 15585163 15585256 + Mirlet7e miRNA miRNA MGP_CASTEiJ_T0048116.1 MGP_CASTEiJ_G0023170.1 mouse_genomes_project 17 59594051 59594504 - MGP_CASTEiJ_P0048116 Gm21834 protein_coding protein_coding MGP_CASTEiJ_T0048055.1 MGP_CASTEiJ_G0023136.1 mouse_genomes_project 17 58434922 58435771 + MGP_CASTEiJ_P0048055 Rpl36 protein_coding protein_coding MGP_CASTEiJ_T0012877.1 MGP_CASTEiJ_G0011040.1 mouse_genomes_project 17 49264313 49264507 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012894.1 MGP_CASTEiJ_G0011057.1 mouse_genomes_project 17 70242060 70242942 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009915.1 MGP_CASTEiJ_G0008103.1 mouse_genomes_project 17 25815706 25815770 - Mir3083 miRNA miRNA MGP_CASTEiJ_T0046435.1 MGP_CASTEiJ_G0022693.1 mouse_genomes_project 17 28703082 28761532 + MGP_CASTEiJ_P0046435 Tbc1d22b protein_coding protein_coding MGP_CASTEiJ_T0046436.1 MGP_CASTEiJ_G0022693.1 mouse_genomes_project 17 28727313 28761531 + Tbc1d22b protein_coding retained_intron MGP_CASTEiJ_T0006716.1 MGP_CASTEiJ_G0005546.1 mouse_genomes_project 17 7862187 7866901 + 1700110C19Rik lincRNA lincRNA MGP_CASTEiJ_T0006717.1 MGP_CASTEiJ_G0005546.1 mouse_genomes_project 17 7862187 7866901 + 1700110C19Rik lincRNA lincRNA MGP_CASTEiJ_T0045952.1 MGP_CASTEiJ_G0022583.1 mouse_genomes_project 17 24211901 24219318 - MGP_CASTEiJ_P0045952 Sstr5 protein_coding protein_coding MGP_CASTEiJ_T0045953.1 MGP_CASTEiJ_G0022583.1 mouse_genomes_project 17 24211901 24219318 - MGP_CASTEiJ_P0045953 Sstr5 protein_coding protein_coding MGP_CASTEiJ_T0047789.1 MGP_CASTEiJ_G0023057.1 mouse_genomes_project 17 48819876 48860712 + Gm20517 protein_coding retained_intron MGP_CASTEiJ_T0047790.1 MGP_CASTEiJ_G0023057.1 mouse_genomes_project 17 48819885 48862069 + Gm20517 protein_coding retained_intron MGP_CASTEiJ_T0047792.1 MGP_CASTEiJ_G0023057.1 mouse_genomes_project 17 48819900 48892886 + MGP_CASTEiJ_P0047792 Gm20517 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0016833.1 MGP_CASTEiJ_G0014665.1 mouse_genomes_project 17 37547913 37549922 + processed_transcript retained_intron MGP_CASTEiJ_T0045597.1 MGP_CASTEiJ_G0022490.1 mouse_genomes_project 17 22162145 22179923 - MGP_CASTEiJ_P0045597 Mmp25 protein_coding protein_coding MGP_CASTEiJ_T0046828.1 MGP_CASTEiJ_G0022787.1 mouse_genomes_project 17 33861972 33869715 - MGP_CASTEiJ_P0046828 Psmb9 protein_coding protein_coding MGP_CASTEiJ_T0046829.1 MGP_CASTEiJ_G0022787.1 mouse_genomes_project 17 33862014 33863531 - Psmb9 protein_coding retained_intron MGP_CASTEiJ_T0046830.1 MGP_CASTEiJ_G0022787.1 mouse_genomes_project 17 33862017 33869304 - Psmb9 protein_coding retained_intron MGP_CASTEiJ_T0046831.1 MGP_CASTEiJ_G0022787.1 mouse_genomes_project 17 33862020 33863713 - MGP_CASTEiJ_P0046831 Psmb9 protein_coding protein_coding MGP_CASTEiJ_T0046832.1 MGP_CASTEiJ_G0022787.1 mouse_genomes_project 17 33862208 33869260 - MGP_CASTEiJ_P0046832 Psmb9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0046833.1 MGP_CASTEiJ_G0022787.1 mouse_genomes_project 17 33864011 33869289 - Psmb9 protein_coding retained_intron MGP_CASTEiJ_T0046834.1 MGP_CASTEiJ_G0022787.1 mouse_genomes_project 17 33864263 33869170 - MGP_CASTEiJ_P0046834 Psmb9 protein_coding protein_coding MGP_CASTEiJ_T0000949.1 MGP_CASTEiJ_G0000885.1 mouse_genomes_project 17 53391302 53396098 - TEC TEC MGP_CASTEiJ_T0047814.1 MGP_CASTEiJ_G0023064.1 mouse_genomes_project 17 48952605 49014091 + MGP_CASTEiJ_P0047814 Tfeb protein_coding protein_coding MGP_CASTEiJ_T0047815.1 MGP_CASTEiJ_G0023064.1 mouse_genomes_project 17 48953175 49007850 + MGP_CASTEiJ_P0047815 Tfeb protein_coding protein_coding MGP_CASTEiJ_T0047816.1 MGP_CASTEiJ_G0023064.1 mouse_genomes_project 17 48953502 49014087 + MGP_CASTEiJ_P0047816 Tfeb protein_coding protein_coding MGP_CASTEiJ_T0047817.1 MGP_CASTEiJ_G0023064.1 mouse_genomes_project 17 48954477 49010832 + MGP_CASTEiJ_P0047817 Tfeb protein_coding protein_coding MGP_CASTEiJ_T0047818.1 MGP_CASTEiJ_G0023064.1 mouse_genomes_project 17 48969898 49007850 + MGP_CASTEiJ_P0047818 Tfeb protein_coding protein_coding MGP_CASTEiJ_T0047819.1 MGP_CASTEiJ_G0023064.1 mouse_genomes_project 17 48974591 49007962 + MGP_CASTEiJ_P0047819 Tfeb protein_coding protein_coding MGP_CASTEiJ_T0047820.1 MGP_CASTEiJ_G0023064.1 mouse_genomes_project 17 48978581 49008063 + MGP_CASTEiJ_P0047820 Tfeb protein_coding protein_coding MGP_CASTEiJ_T0047821.1 MGP_CASTEiJ_G0023064.1 mouse_genomes_project 17 48986778 49008065 + MGP_CASTEiJ_P0047821 Tfeb protein_coding protein_coding MGP_CASTEiJ_T0047822.1 MGP_CASTEiJ_G0023064.1 mouse_genomes_project 17 48986778 49008067 + MGP_CASTEiJ_P0047822 Tfeb protein_coding protein_coding MGP_CASTEiJ_T0047823.1 MGP_CASTEiJ_G0023064.1 mouse_genomes_project 17 49004647 49008143 + MGP_CASTEiJ_P0047823 Tfeb protein_coding protein_coding MGP_CASTEiJ_T0047824.1 MGP_CASTEiJ_G0023064.1 mouse_genomes_project 17 49007485 49014087 + MGP_CASTEiJ_P0047824 Tfeb protein_coding protein_coding MGP_CASTEiJ_T0047825.1 MGP_CASTEiJ_G0023064.1 mouse_genomes_project 17 49007920 49014088 + MGP_CASTEiJ_P0047825 Tfeb protein_coding protein_coding MGP_CASTEiJ_T0047826.1 MGP_CASTEiJ_G0023064.1 mouse_genomes_project 17 49009334 49011400 + Tfeb protein_coding processed_transcript MGP_CASTEiJ_T0047827.1 MGP_CASTEiJ_G0023064.1 mouse_genomes_project 17 49009676 49010700 + Tfeb protein_coding retained_intron MGP_CASTEiJ_T0047828.1 MGP_CASTEiJ_G0023064.1 mouse_genomes_project 17 49011124 49013285 + Tfeb protein_coding retained_intron MGP_CASTEiJ_T0006791.1 MGP_CASTEiJ_G0005604.1 mouse_genomes_project 17 66732410 66777448 - AU016765 lincRNA lincRNA MGP_CASTEiJ_T0006792.1 MGP_CASTEiJ_G0005604.1 mouse_genomes_project 17 66732463 66777406 - AU016765 lincRNA lincRNA MGP_CASTEiJ_T0006793.1 MGP_CASTEiJ_G0005604.1 mouse_genomes_project 17 66732466 66777486 - AU016765 lincRNA lincRNA MGP_CASTEiJ_T0006794.1 MGP_CASTEiJ_G0005604.1 mouse_genomes_project 17 66732468 66777329 - AU016765 lincRNA lincRNA MGP_CASTEiJ_T0099550.1 MGP_CASTEiJ_G0036463.1 mouse_genomes_project 17 88037205 88037314 + Gm26066 snRNA snRNA MGP_CASTEiJ_T0046239.1 MGP_CASTEiJ_G0022652.1 mouse_genomes_project 17 26728715 26803679 - MGP_CASTEiJ_P0046239 D17Wsu92e protein_coding protein_coding MGP_CASTEiJ_T0046240.1 MGP_CASTEiJ_G0022652.1 mouse_genomes_project 17 26728729 26803612 - MGP_CASTEiJ_P0046240 D17Wsu92e protein_coding protein_coding MGP_CASTEiJ_T0046241.1 MGP_CASTEiJ_G0022652.1 mouse_genomes_project 17 26744882 26803663 - MGP_CASTEiJ_P0046241 D17Wsu92e protein_coding protein_coding MGP_CASTEiJ_T0047382.1 MGP_CASTEiJ_G0022903.1 mouse_genomes_project 17 37240376 37243907 - MGP_CASTEiJ_P0047382 2410137M14Rik protein_coding protein_coding MGP_CASTEiJ_T0047383.1 MGP_CASTEiJ_G0022903.1 mouse_genomes_project 17 37240517 37243887 - MGP_CASTEiJ_P0047383 2410137M14Rik protein_coding protein_coding MGP_CASTEiJ_T0046648.1 MGP_CASTEiJ_G0022753.1 mouse_genomes_project 17 32907653 32908608 + MGP_CASTEiJ_P0046648 Olfr63 protein_coding protein_coding MGP_CASTEiJ_T0048310.1 MGP_CASTEiJ_G0023222.1 mouse_genomes_project 17 75766776 75823357 + MGP_CASTEiJ_P0048310 Lclat1 protein_coding protein_coding MGP_CASTEiJ_T0048311.1 MGP_CASTEiJ_G0023222.1 mouse_genomes_project 17 75766779 75850521 + MGP_CASTEiJ_P0048311 Lclat1 protein_coding protein_coding MGP_CASTEiJ_T0048312.1 MGP_CASTEiJ_G0023222.1 mouse_genomes_project 17 75766785 75903379 + MGP_CASTEiJ_P0048312 Lclat1 protein_coding protein_coding MGP_CASTEiJ_T0048313.1 MGP_CASTEiJ_G0023222.1 mouse_genomes_project 17 75824354 75899909 + Lclat1 protein_coding processed_transcript MGP_CASTEiJ_T0048314.1 MGP_CASTEiJ_G0023222.1 mouse_genomes_project 17 75860764 75900372 + Lclat1 protein_coding processed_transcript MGP_CASTEiJ_T0098357.1 MGP_CASTEiJ_G0035288.1 mouse_genomes_project 17 94296577 94297190 + pseudogene pseudogene MGP_CASTEiJ_T0047522.1 MGP_CASTEiJ_G0022985.1 mouse_genomes_project 17 44513535 44540806 - MGP_CASTEiJ_P0047522 Slc25a27 protein_coding protein_coding MGP_CASTEiJ_T0048133.1 MGP_CASTEiJ_G0023176.1 mouse_genomes_project 17 66042140 66042632 - MGP_CASTEiJ_P0048133 A930002H24Rik protein_coding protein_coding MGP_CASTEiJ_T0046572.1 MGP_CASTEiJ_G0022728.1 mouse_genomes_project 17 31864782 31892295 - MGP_CASTEiJ_P0046572 Wiz protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046573.1 MGP_CASTEiJ_G0022728.1 mouse_genomes_project 17 31864783 31893005 - MGP_CASTEiJ_P0046573 Wiz protein_coding unknown_likely_coding MGP_CASTEiJ_T0046574.1 MGP_CASTEiJ_G0022728.1 mouse_genomes_project 17 31864784 31892536 - MGP_CASTEiJ_P0046574 Wiz protein_coding protein_coding MGP_CASTEiJ_T0046575.1 MGP_CASTEiJ_G0022728.1 mouse_genomes_project 17 31864788 31893050 - MGP_CASTEiJ_P0046575 Wiz protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046576.1 MGP_CASTEiJ_G0022728.1 mouse_genomes_project 17 31865376 31873693 - MGP_CASTEiJ_P0046576 Wiz protein_coding protein_coding MGP_CASTEiJ_T0046577.1 MGP_CASTEiJ_G0022728.1 mouse_genomes_project 17 31865751 31891410 - MGP_CASTEiJ_P0046577 Wiz protein_coding protein_coding MGP_CASTEiJ_T0046578.1 MGP_CASTEiJ_G0022728.1 mouse_genomes_project 17 31872404 31875193 - Wiz protein_coding processed_transcript MGP_CASTEiJ_T0046579.1 MGP_CASTEiJ_G0022728.1 mouse_genomes_project 17 31872543 31880178 - Wiz protein_coding retained_intron MGP_CASTEiJ_T0046580.1 MGP_CASTEiJ_G0022728.1 mouse_genomes_project 17 31872638 31892237 - MGP_CASTEiJ_P0046580 Wiz protein_coding protein_coding MGP_CASTEiJ_T0046581.1 MGP_CASTEiJ_G0022728.1 mouse_genomes_project 17 31877790 31892377 - Wiz protein_coding retained_intron MGP_CASTEiJ_T0046582.1 MGP_CASTEiJ_G0022728.1 mouse_genomes_project 17 31878830 31892601 - MGP_CASTEiJ_P0046582 Wiz protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046583.1 MGP_CASTEiJ_G0022728.1 mouse_genomes_project 17 31880064 31893035 - MGP_CASTEiJ_P0046583 Wiz protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046584.1 MGP_CASTEiJ_G0022728.1 mouse_genomes_project 17 31880178 31893060 - Wiz protein_coding retained_intron MGP_CASTEiJ_T0046585.1 MGP_CASTEiJ_G0022728.1 mouse_genomes_project 17 31891223 31892775 - MGP_CASTEiJ_P0046585 Wiz protein_coding protein_coding MGP_CASTEiJ_T0047142.1 MGP_CASTEiJ_G0022851.1 mouse_genomes_project 17 35058032 35060661 - MGP_CASTEiJ_P0047142 Tnf protein_coding protein_coding MGP_CASTEiJ_T0047143.1 MGP_CASTEiJ_G0022851.1 mouse_genomes_project 17 35058158 35060658 - MGP_CASTEiJ_P0047143 Tnf protein_coding protein_coding MGP_CASTEiJ_T0048504.1 MGP_CASTEiJ_G0023300.1 mouse_genomes_project 17 90574682 90611921 + MGP_CASTEiJ_P0048504 Rhoq protein_coding protein_coding MGP_CASTEiJ_T0048505.1 MGP_CASTEiJ_G0023300.1 mouse_genomes_project 17 90574892 90606953 + MGP_CASTEiJ_P0048505 Rhoq protein_coding protein_coding MGP_CASTEiJ_T0048506.1 MGP_CASTEiJ_G0023300.1 mouse_genomes_project 17 90575134 90586712 + MGP_CASTEiJ_P0048506 Rhoq protein_coding unknown_likely_coding MGP_CASTEiJ_T0099523.1 MGP_CASTEiJ_G0036436.1 mouse_genomes_project 17 24424054 24424161 - Gm22645 snRNA snRNA MGP_CASTEiJ_T0012845.1 MGP_CASTEiJ_G0011008.1 mouse_genomes_project 17 26459646 26459921 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009921.1 MGP_CASTEiJ_G0008109.1 mouse_genomes_project 17 27585764 27585890 + Gm25195 miRNA miRNA MGP_CASTEiJ_T0012863.1 MGP_CASTEiJ_G0011026.1 mouse_genomes_project 17 37408638 37409304 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045732.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23136055 23158469 - MGP_CASTEiJ_P0045732 Traf7 protein_coding protein_coding MGP_CASTEiJ_T0045733.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23136343 23139981 - Traf7 protein_coding retained_intron MGP_CASTEiJ_T0045734.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23136343 23158381 - MGP_CASTEiJ_P0045734 Traf7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045735.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23136343 23148357 - MGP_CASTEiJ_P0045735 Traf7 protein_coding protein_coding MGP_CASTEiJ_T0045736.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23136343 23158421 - MGP_CASTEiJ_P0045736 Traf7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045737.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23136343 23148357 - MGP_CASTEiJ_P0045737 Traf7 protein_coding protein_coding MGP_CASTEiJ_T0045738.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23136343 23158377 - MGP_CASTEiJ_P0045738 Traf7 protein_coding protein_coding MGP_CASTEiJ_T0045739.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23136347 23138527 - Traf7 protein_coding retained_intron MGP_CASTEiJ_T0045740.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23137555 23138005 - Traf7 protein_coding retained_intron MGP_CASTEiJ_T0045741.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23137706 23139865 - Traf7 protein_coding retained_intron MGP_CASTEiJ_T0045742.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23137978 23140060 - Traf7 protein_coding retained_intron MGP_CASTEiJ_T0045743.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23139090 23142498 - MGP_CASTEiJ_P0045743 Traf7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045744.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23139181 23143897 - MGP_CASTEiJ_P0045744 Traf7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045745.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23139739 23158394 - MGP_CASTEiJ_P0045745 Traf7 protein_coding protein_coding MGP_CASTEiJ_T0045746.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23141789 23142397 - Traf7 protein_coding retained_intron MGP_CASTEiJ_T0045747.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23142217 23158020 - MGP_CASTEiJ_P0045747 Traf7 protein_coding protein_coding MGP_CASTEiJ_T0045748.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23142400 23158377 - MGP_CASTEiJ_P0045748 Traf7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045749.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23142412 23158364 - MGP_CASTEiJ_P0045749 Traf7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045750.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23142419 23158442 - MGP_CASTEiJ_P0045750 Traf7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045751.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23142495 23158079 - MGP_CASTEiJ_P0045751 Traf7 protein_coding protein_coding MGP_CASTEiJ_T0045752.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23143079 23158377 - MGP_CASTEiJ_P0045752 Traf7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045753.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23143877 23158352 - MGP_CASTEiJ_P0045753 Traf7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045754.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23145451 23158381 - Traf7 protein_coding retained_intron MGP_CASTEiJ_T0045755.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23145709 23158399 - Traf7 protein_coding processed_transcript MGP_CASTEiJ_T0045756.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23147520 23158382 - Traf7 protein_coding processed_transcript MGP_CASTEiJ_T0045757.1 MGP_CASTEiJ_G0022532.1 mouse_genomes_project 17 23147721 23158315 - Traf7 protein_coding retained_intron MGP_CASTEiJ_T0006722.1 MGP_CASTEiJ_G0005551.1 mouse_genomes_project 17 13029052 13033919 + A930024N18Rik lincRNA lincRNA MGP_CASTEiJ_T0045929.1 MGP_CASTEiJ_G0022575.1 mouse_genomes_project 17 23995269 23997037 + MGP_CASTEiJ_P0045929 Prss34 protein_coding protein_coding MGP_CASTEiJ_T0047234.1 MGP_CASTEiJ_G0022871.1 mouse_genomes_project 17 35916074 35920457 - MGP_CASTEiJ_P0047234 Tubb5 protein_coding protein_coding MGP_CASTEiJ_T0047235.1 MGP_CASTEiJ_G0022871.1 mouse_genomes_project 17 35916942 35920400 - MGP_CASTEiJ_P0047235 Tubb5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047236.1 MGP_CASTEiJ_G0022871.1 mouse_genomes_project 17 35917749 35919205 - Tubb5 protein_coding retained_intron MGP_CASTEiJ_T0047237.1 MGP_CASTEiJ_G0022871.1 mouse_genomes_project 17 35918045 35920359 - MGP_CASTEiJ_P0047237 Tubb5 protein_coding protein_coding MGP_CASTEiJ_T0047238.1 MGP_CASTEiJ_G0022871.1 mouse_genomes_project 17 35918391 35920368 - Tubb5 protein_coding retained_intron MGP_CASTEiJ_T0047183.1 MGP_CASTEiJ_G0022864.1 mouse_genomes_project 17 35682523 35691795 - protein_coding processed_transcript MGP_CASTEiJ_T0003650.1 MGP_CASTEiJ_G0003292.1 mouse_genomes_project 17 48908994 48911026 - Frs3os antisense antisense MGP_CASTEiJ_T0003651.1 MGP_CASTEiJ_G0003292.1 mouse_genomes_project 17 48909063 48909857 - Frs3os antisense antisense MGP_CASTEiJ_T0003652.1 MGP_CASTEiJ_G0003292.1 mouse_genomes_project 17 48909346 48911009 - Frs3os antisense antisense MGP_CASTEiJ_T0100763.1 MGP_CASTEiJ_G0037676.1 mouse_genomes_project 17 35008690 35008824 - Gm23442 snoRNA snoRNA MGP_CASTEiJ_T0012846.1 MGP_CASTEiJ_G0011009.1 mouse_genomes_project 17 26763872 26764689 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046052.1 MGP_CASTEiJ_G0022607.1 mouse_genomes_project 17 24633937 24681156 - MGP_CASTEiJ_P0046052 Rab40c protein_coding protein_coding MGP_CASTEiJ_T0046053.1 MGP_CASTEiJ_G0022607.1 mouse_genomes_project 17 24633937 24681146 - MGP_CASTEiJ_P0046053 Rab40c protein_coding protein_coding MGP_CASTEiJ_T0046054.1 MGP_CASTEiJ_G0022607.1 mouse_genomes_project 17 24633937 24681218 - MGP_CASTEiJ_P0046054 Rab40c protein_coding protein_coding MGP_CASTEiJ_T0046055.1 MGP_CASTEiJ_G0022607.1 mouse_genomes_project 17 24633937 24681060 - MGP_CASTEiJ_P0046055 Rab40c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046056.1 MGP_CASTEiJ_G0022607.1 mouse_genomes_project 17 24633940 24675136 - Rab40c protein_coding processed_transcript MGP_CASTEiJ_T0046057.1 MGP_CASTEiJ_G0022607.1 mouse_genomes_project 17 24635451 24681010 - MGP_CASTEiJ_P0046057 Rab40c protein_coding protein_coding MGP_CASTEiJ_T0046058.1 MGP_CASTEiJ_G0022607.1 mouse_genomes_project 17 24635462 24681231 - MGP_CASTEiJ_P0046058 Rab40c protein_coding protein_coding MGP_CASTEiJ_T0046059.1 MGP_CASTEiJ_G0022607.1 mouse_genomes_project 17 24636585 24681194 - Rab40c protein_coding processed_transcript MGP_CASTEiJ_T0046060.1 MGP_CASTEiJ_G0022607.1 mouse_genomes_project 17 24636901 24681215 - MGP_CASTEiJ_P0046060 Rab40c protein_coding protein_coding MGP_CASTEiJ_T0047350.1 MGP_CASTEiJ_G0022894.1 mouse_genomes_project 17 37092039 37092754 + Trim26 protein_coding retained_intron MGP_CASTEiJ_T0047351.1 MGP_CASTEiJ_G0022894.1 mouse_genomes_project 17 37092046 37111898 + Trim26 protein_coding retained_intron MGP_CASTEiJ_T0047352.1 MGP_CASTEiJ_G0022894.1 mouse_genomes_project 17 37092046 37115247 + MGP_CASTEiJ_P0047352 Trim26 protein_coding protein_coding MGP_CASTEiJ_T0047353.1 MGP_CASTEiJ_G0022894.1 mouse_genomes_project 17 37092048 37115265 + MGP_CASTEiJ_P0047353 Trim26 protein_coding protein_coding MGP_CASTEiJ_T0047354.1 MGP_CASTEiJ_G0022894.1 mouse_genomes_project 17 37092051 37115247 + MGP_CASTEiJ_P0047354 Trim26 protein_coding protein_coding MGP_CASTEiJ_T0047355.1 MGP_CASTEiJ_G0022894.1 mouse_genomes_project 17 37092078 37108558 + MGP_CASTEiJ_P0047355 Trim26 protein_coding protein_coding MGP_CASTEiJ_T0047356.1 MGP_CASTEiJ_G0022894.1 mouse_genomes_project 17 37092089 37113494 + MGP_CASTEiJ_P0047356 Trim26 protein_coding protein_coding MGP_CASTEiJ_T0047357.1 MGP_CASTEiJ_G0022894.1 mouse_genomes_project 17 37092089 37115264 + MGP_CASTEiJ_P0047357 Trim26 protein_coding protein_coding MGP_CASTEiJ_T0047358.1 MGP_CASTEiJ_G0022894.1 mouse_genomes_project 17 37108370 37113806 + MGP_CASTEiJ_P0047358 Trim26 protein_coding protein_coding MGP_CASTEiJ_T0047359.1 MGP_CASTEiJ_G0022894.1 mouse_genomes_project 17 37110502 37115265 + Trim26 protein_coding processed_transcript MGP_CASTEiJ_T0012842.1 MGP_CASTEiJ_G0011005.1 mouse_genomes_project 17 21191573 21200882 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0047992.1 MGP_CASTEiJ_G0023119.1 mouse_genomes_project 17 57886715 57893438 - MGP_CASTEiJ_P0047992 protein_coding protein_coding MGP_CASTEiJ_T0006803.1 MGP_CASTEiJ_G0005611.1 mouse_genomes_project 17 77387096 77433286 - Gm26749 lincRNA lincRNA MGP_CASTEiJ_T0003602.1 MGP_CASTEiJ_G0003256.1 mouse_genomes_project 17 22398486 22403981 - Gm15947 antisense antisense MGP_CASTEiJ_T0047460.1 MGP_CASTEiJ_G0022948.1 mouse_genomes_project 17 38537328 38538267 + MGP_CASTEiJ_P0047460 Olfr134 protein_coding protein_coding MGP_CASTEiJ_T0102186.1 MGP_CASTEiJ_G0038911.1 mouse_genomes_project 17 55533480 55534097 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0047742.1 MGP_CASTEiJ_G0023043.1 mouse_genomes_project 17 48031755 48032948 - MGP_CASTEiJ_P0047742 A330017A19Rik protein_coding protein_coding MGP_CASTEiJ_T0045905.1 MGP_CASTEiJ_G0022571.1 mouse_genomes_project 17 23920141 23926824 - MGP_CASTEiJ_P0045905 Gnptg protein_coding protein_coding MGP_CASTEiJ_T0045906.1 MGP_CASTEiJ_G0022571.1 mouse_genomes_project 17 23921127 23926816 - MGP_CASTEiJ_P0045906 Gnptg protein_coding protein_coding MGP_CASTEiJ_T0048429.1 MGP_CASTEiJ_G0023269.1 mouse_genomes_project 17 83779695 83933246 - MGP_CASTEiJ_P0048429 Map4k3 protein_coding protein_coding MGP_CASTEiJ_T0048430.1 MGP_CASTEiJ_G0023269.1 mouse_genomes_project 17 83779695 83933246 - MGP_CASTEiJ_P0048430 Map4k3 protein_coding protein_coding MGP_CASTEiJ_T0048431.1 MGP_CASTEiJ_G0023269.1 mouse_genomes_project 17 83832075 83933181 - MGP_CASTEiJ_P0048431 Map4k3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099534.1 MGP_CASTEiJ_G0036447.1 mouse_genomes_project 17 44301589 44301732 + Gm25135 snRNA snRNA MGP_CASTEiJ_T0048117.1 MGP_CASTEiJ_G0023171.1 mouse_genomes_project 17 59626854 60269182 + MGP_CASTEiJ_P0048117 Cntnap5c protein_coding unknown_likely_coding MGP_CASTEiJ_T0048118.1 MGP_CASTEiJ_G0023171.1 mouse_genomes_project 17 59627260 60265904 + MGP_CASTEiJ_P0048118 Cntnap5c protein_coding protein_coding MGP_CASTEiJ_T0047284.1 MGP_CASTEiJ_G0022878.1 mouse_genomes_project 17 36001969 36009417 - MGP_CASTEiJ_P0047284 Mrps18b protein_coding protein_coding MGP_CASTEiJ_T0047285.1 MGP_CASTEiJ_G0022878.1 mouse_genomes_project 17 36001969 36009417 - MGP_CASTEiJ_P0047285 Mrps18b protein_coding protein_coding MGP_CASTEiJ_T0047286.1 MGP_CASTEiJ_G0022878.1 mouse_genomes_project 17 36001976 36009358 - MGP_CASTEiJ_P0047286 Mrps18b protein_coding protein_coding MGP_CASTEiJ_T0047287.1 MGP_CASTEiJ_G0022878.1 mouse_genomes_project 17 36002093 36004157 - Mrps18b protein_coding retained_intron MGP_CASTEiJ_T0047288.1 MGP_CASTEiJ_G0022878.1 mouse_genomes_project 17 36002441 36009365 - MGP_CASTEiJ_P0047288 Mrps18b protein_coding protein_coding MGP_CASTEiJ_T0047289.1 MGP_CASTEiJ_G0022878.1 mouse_genomes_project 17 36003031 36009351 - MGP_CASTEiJ_P0047289 Mrps18b protein_coding protein_coding MGP_CASTEiJ_T0047290.1 MGP_CASTEiJ_G0022878.1 mouse_genomes_project 17 36005367 36009405 - Mrps18b protein_coding retained_intron MGP_CASTEiJ_T0047291.1 MGP_CASTEiJ_G0022878.1 mouse_genomes_project 17 36006134 36009231 - Mrps18b protein_coding processed_transcript MGP_CASTEiJ_T0009952.1 MGP_CASTEiJ_G0008140.1 mouse_genomes_project 17 94082939 94083041 + Gm24510 miRNA miRNA MGP_CASTEiJ_T0016805.1 MGP_CASTEiJ_G0014654.1 mouse_genomes_project 17 23017285 23027828 - D330041H03Rik processed_transcript antisense MGP_CASTEiJ_T0016806.1 MGP_CASTEiJ_G0014654.1 mouse_genomes_project 17 23022109 23027906 - D330041H03Rik processed_transcript antisense MGP_CASTEiJ_T0016807.1 MGP_CASTEiJ_G0014654.1 mouse_genomes_project 17 23022125 23027806 - D330041H03Rik processed_transcript antisense MGP_CASTEiJ_T0016808.1 MGP_CASTEiJ_G0014654.1 mouse_genomes_project 17 23025425 23027031 - D330041H03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016809.1 MGP_CASTEiJ_G0014654.1 mouse_genomes_project 17 23025816 23027826 - D330041H03Rik processed_transcript retained_intron MGP_CASTEiJ_T0016810.1 MGP_CASTEiJ_G0014654.1 mouse_genomes_project 17 23025891 23027798 - D330041H03Rik processed_transcript antisense MGP_CASTEiJ_T0006779.1 MGP_CASTEiJ_G0005598.1 mouse_genomes_project 17 50520812 50522063 - 1700008K24Rik lincRNA lincRNA MGP_CASTEiJ_T0006780.1 MGP_CASTEiJ_G0005598.1 mouse_genomes_project 17 50520812 50522076 - 1700008K24Rik lincRNA lincRNA MGP_CASTEiJ_T0006781.1 MGP_CASTEiJ_G0005598.1 mouse_genomes_project 17 50520814 50521984 - 1700008K24Rik lincRNA lincRNA MGP_CASTEiJ_T0006782.1 MGP_CASTEiJ_G0005598.1 mouse_genomes_project 17 50520814 50522041 - 1700008K24Rik lincRNA lincRNA MGP_CASTEiJ_T0006783.1 MGP_CASTEiJ_G0005598.1 mouse_genomes_project 17 50520922 50522083 - 1700008K24Rik lincRNA lincRNA MGP_CASTEiJ_T0047786.1 MGP_CASTEiJ_G0023055.1 mouse_genomes_project 17 48807124 48819780 - MGP_CASTEiJ_P0047786 Bysl protein_coding protein_coding MGP_CASTEiJ_T0046033.1 MGP_CASTEiJ_G0022603.1 mouse_genomes_project 17 24592170 24608715 - Wdr90 protein_coding retained_intron MGP_CASTEiJ_T0046034.1 MGP_CASTEiJ_G0022603.1 mouse_genomes_project 17 24592170 24608807 - MGP_CASTEiJ_P0046034 Wdr90 protein_coding protein_coding MGP_CASTEiJ_T0046035.1 MGP_CASTEiJ_G0022603.1 mouse_genomes_project 17 24592172 24608800 - Wdr90 protein_coding retained_intron MGP_CASTEiJ_T0046036.1 MGP_CASTEiJ_G0022603.1 mouse_genomes_project 17 24592467 24608833 - MGP_CASTEiJ_P0046036 Wdr90 protein_coding protein_coding MGP_CASTEiJ_T0046037.1 MGP_CASTEiJ_G0022603.1 mouse_genomes_project 17 24592787 24593894 - Wdr90 protein_coding retained_intron MGP_CASTEiJ_T0046038.1 MGP_CASTEiJ_G0022603.1 mouse_genomes_project 17 24595968 24599123 - Wdr90 protein_coding retained_intron MGP_CASTEiJ_T0046039.1 MGP_CASTEiJ_G0022603.1 mouse_genomes_project 17 24597355 24599230 - Wdr90 protein_coding retained_intron MGP_CASTEiJ_T0046040.1 MGP_CASTEiJ_G0022603.1 mouse_genomes_project 17 24599273 24601253 - Wdr90 protein_coding retained_intron MGP_CASTEiJ_T0046041.1 MGP_CASTEiJ_G0022603.1 mouse_genomes_project 17 24600697 24608807 - Wdr90 protein_coding retained_intron MGP_CASTEiJ_T0046042.1 MGP_CASTEiJ_G0022603.1 mouse_genomes_project 17 24601187 24602657 - Wdr90 protein_coding retained_intron MGP_CASTEiJ_T0046043.1 MGP_CASTEiJ_G0022603.1 mouse_genomes_project 17 24603141 24606558 - MGP_CASTEiJ_P0046043 Wdr90 protein_coding protein_coding MGP_CASTEiJ_T0047966.1 MGP_CASTEiJ_G0023109.1 mouse_genomes_project 17 57720711 57724959 + MGP_CASTEiJ_P0047966 Ebi3 protein_coding protein_coding MGP_CASTEiJ_T0000956.1 MGP_CASTEiJ_G0000892.1 mouse_genomes_project 17 55968452 55968778 + TEC TEC MGP_CASTEiJ_T0045257.1 MGP_CASTEiJ_G0022361.1 mouse_genomes_project 17 3277370 3285282 + MGP_CASTEiJ_P0045257 Gtf2h5 protein_coding protein_coding MGP_CASTEiJ_T0045258.1 MGP_CASTEiJ_G0022361.1 mouse_genomes_project 17 3277421 3279920 + Gtf2h5 protein_coding retained_intron MGP_CASTEiJ_T0045259.1 MGP_CASTEiJ_G0022361.1 mouse_genomes_project 17 3277514 3283897 + MGP_CASTEiJ_P0045259 Gtf2h5 protein_coding protein_coding MGP_CASTEiJ_T0102184.1 MGP_CASTEiJ_G0038909.1 mouse_genomes_project 17 37743103 37743660 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0046204.1 MGP_CASTEiJ_G0022642.1 mouse_genomes_project 17 26032331 26061276 - MGP_CASTEiJ_P0046204 Ip6k3 protein_coding protein_coding MGP_CASTEiJ_T0047068.1 MGP_CASTEiJ_G0022835.1 mouse_genomes_project 17 34906476 34909958 - MGP_CASTEiJ_P0047068 G6b protein_coding protein_coding MGP_CASTEiJ_T0047069.1 MGP_CASTEiJ_G0022835.1 mouse_genomes_project 17 34908110 34909944 - MGP_CASTEiJ_P0047069 G6b protein_coding protein_coding MGP_CASTEiJ_T0006743.1 MGP_CASTEiJ_G0005569.1 mouse_genomes_project 17 28118721 28120009 - Gm16196 lincRNA lincRNA MGP_CASTEiJ_T0045517.1 MGP_CASTEiJ_G0022452.1 mouse_genomes_project 17 18642009 18643041 - MGP_CASTEiJ_P0045517 Fpr-rs3 protein_coding protein_coding MGP_CASTEiJ_T0048536.1 MGP_CASTEiJ_G0023308.1 mouse_genomes_project 17 91308521 91324565 + MGP_CASTEiJ_P0048536 Epcam protein_coding protein_coding MGP_CASTEiJ_T0048599.1 MGP_CASTEiJ_G0023323.1 mouse_genomes_project 17 98733936 98758553 - MGP_CASTEiJ_P0048599 Mettl4 protein_coding protein_coding MGP_CASTEiJ_T0047965.1 MGP_CASTEiJ_G0023108.1 mouse_genomes_project 17 57701541 57717611 - MGP_CASTEiJ_P0047965 Zfp119b protein_coding protein_coding MGP_CASTEiJ_T0048076.1 MGP_CASTEiJ_G0023151.1 mouse_genomes_project 17 58852994 58854966 + MGP_CASTEiJ_P0048076 Alkbh7 protein_coding protein_coding MGP_CASTEiJ_T0048077.1 MGP_CASTEiJ_G0023151.1 mouse_genomes_project 17 58852998 58854977 + MGP_CASTEiJ_P0048077 Alkbh7 protein_coding protein_coding MGP_CASTEiJ_T0048078.1 MGP_CASTEiJ_G0023151.1 mouse_genomes_project 17 58854135 58854793 + Alkbh7 protein_coding retained_intron MGP_CASTEiJ_T0003583.1 MGP_CASTEiJ_G0003247.1 mouse_genomes_project 17 2557865 2591018 + Gm29050 antisense antisense MGP_CASTEiJ_T0003584.1 MGP_CASTEiJ_G0003247.1 mouse_genomes_project 17 2576673 2593242 + Gm29050 antisense antisense MGP_CASTEiJ_T0009927.1 MGP_CASTEiJ_G0008115.1 mouse_genomes_project 17 33685121 33685181 + Mir219c miRNA miRNA MGP_CASTEiJ_T0048428.1 MGP_CASTEiJ_G0023268.1 mouse_genomes_project 17 83714918 83760798 - MGP_CASTEiJ_P0048428 Cdkl4 protein_coding protein_coding MGP_CASTEiJ_T0046586.1 MGP_CASTEiJ_G0022729.1 mouse_genomes_project 17 31895243 31908162 - MGP_CASTEiJ_P0046586 Rasal3 protein_coding protein_coding MGP_CASTEiJ_T0046587.1 MGP_CASTEiJ_G0022729.1 mouse_genomes_project 17 31895245 31908138 - MGP_CASTEiJ_P0046587 Rasal3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046588.1 MGP_CASTEiJ_G0022729.1 mouse_genomes_project 17 31895254 31908147 - Rasal3 protein_coding retained_intron MGP_CASTEiJ_T0046589.1 MGP_CASTEiJ_G0022729.1 mouse_genomes_project 17 31895501 31896093 - Rasal3 protein_coding retained_intron MGP_CASTEiJ_T0046590.1 MGP_CASTEiJ_G0022729.1 mouse_genomes_project 17 31895508 31908160 - MGP_CASTEiJ_P0046590 Rasal3 protein_coding protein_coding MGP_CASTEiJ_T0046591.1 MGP_CASTEiJ_G0022729.1 mouse_genomes_project 17 31895557 31908116 - MGP_CASTEiJ_P0046591 Rasal3 protein_coding protein_coding MGP_CASTEiJ_T0046592.1 MGP_CASTEiJ_G0022729.1 mouse_genomes_project 17 31897223 31898311 - Rasal3 protein_coding retained_intron MGP_CASTEiJ_T0046593.1 MGP_CASTEiJ_G0022729.1 mouse_genomes_project 17 31898507 31899956 - Rasal3 protein_coding retained_intron MGP_CASTEiJ_T0046594.1 MGP_CASTEiJ_G0022729.1 mouse_genomes_project 17 31900151 31901294 - Rasal3 protein_coding retained_intron MGP_CASTEiJ_T0046595.1 MGP_CASTEiJ_G0022729.1 mouse_genomes_project 17 31903370 31908160 - Rasal3 protein_coding retained_intron MGP_CASTEiJ_T0102165.1 MGP_CASTEiJ_G0038890.1 mouse_genomes_project 17 36723628 36723854 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0047559.1 MGP_CASTEiJ_G0023000.1 mouse_genomes_project 17 46594088 46599601 - MGP_CASTEiJ_P0047559 Hsp90ab1 protein_coding protein_coding MGP_CASTEiJ_T0047560.1 MGP_CASTEiJ_G0023000.1 mouse_genomes_project 17 46595170 46596041 - Hsp90ab1 protein_coding retained_intron MGP_CASTEiJ_T0047561.1 MGP_CASTEiJ_G0023000.1 mouse_genomes_project 17 46595330 46599583 - MGP_CASTEiJ_P0047561 Hsp90ab1 protein_coding protein_coding MGP_CASTEiJ_T0047562.1 MGP_CASTEiJ_G0023000.1 mouse_genomes_project 17 46595882 46599585 - MGP_CASTEiJ_P0047562 Hsp90ab1 protein_coding protein_coding MGP_CASTEiJ_T0047563.1 MGP_CASTEiJ_G0023000.1 mouse_genomes_project 17 46596751 46597884 - Hsp90ab1 protein_coding retained_intron MGP_CASTEiJ_T0047564.1 MGP_CASTEiJ_G0023000.1 mouse_genomes_project 17 46596969 46599585 - MGP_CASTEiJ_P0047564 Hsp90ab1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047565.1 MGP_CASTEiJ_G0023000.1 mouse_genomes_project 17 46597319 46599601 - Hsp90ab1 protein_coding retained_intron MGP_CASTEiJ_T0047566.1 MGP_CASTEiJ_G0023000.1 mouse_genomes_project 17 46597839 46598868 - MGP_CASTEiJ_P0047566 Hsp90ab1 protein_coding protein_coding MGP_CASTEiJ_T0006755.1 MGP_CASTEiJ_G0005577.1 mouse_genomes_project 17 31880064 31882104 + lincRNA lincRNA MGP_CASTEiJ_T0047166.1 MGP_CASTEiJ_G0022858.1 mouse_genomes_project 17 35554984 35559052 - MGP_CASTEiJ_P0047166 Tcf19 protein_coding protein_coding MGP_CASTEiJ_T0047167.1 MGP_CASTEiJ_G0022858.1 mouse_genomes_project 17 35554987 35559013 - MGP_CASTEiJ_P0047167 Tcf19 protein_coding protein_coding MGP_CASTEiJ_T0047168.1 MGP_CASTEiJ_G0022858.1 mouse_genomes_project 17 35556878 35559048 - MGP_CASTEiJ_P0047168 Tcf19 protein_coding protein_coding MGP_CASTEiJ_T0047169.1 MGP_CASTEiJ_G0022858.1 mouse_genomes_project 17 35557042 35558775 - MGP_CASTEiJ_P0047169 Tcf19 protein_coding protein_coding MGP_CASTEiJ_T0047245.1 MGP_CASTEiJ_G0022874.1 mouse_genomes_project 17 35949056 35960372 + MGP_CASTEiJ_P0047245 Ppp1r18 protein_coding protein_coding MGP_CASTEiJ_T0047246.1 MGP_CASTEiJ_G0022874.1 mouse_genomes_project 17 35949088 35960273 + MGP_CASTEiJ_P0047246 Ppp1r18 protein_coding protein_coding MGP_CASTEiJ_T0047247.1 MGP_CASTEiJ_G0022874.1 mouse_genomes_project 17 35949519 35960377 + MGP_CASTEiJ_P0047247 Ppp1r18 protein_coding protein_coding MGP_CASTEiJ_T0047248.1 MGP_CASTEiJ_G0022874.1 mouse_genomes_project 17 35950078 35960378 + MGP_CASTEiJ_P0047248 Ppp1r18 protein_coding protein_coding MGP_CASTEiJ_T0047249.1 MGP_CASTEiJ_G0022874.1 mouse_genomes_project 17 35950123 35960368 + MGP_CASTEiJ_P0047249 Ppp1r18 protein_coding protein_coding MGP_CASTEiJ_T0047250.1 MGP_CASTEiJ_G0022874.1 mouse_genomes_project 17 35951866 35960375 + MGP_CASTEiJ_P0047250 Ppp1r18 protein_coding protein_coding MGP_CASTEiJ_T0045433.1 MGP_CASTEiJ_G0022416.1 mouse_genomes_project 17 13021413 13030029 - MGP_CASTEiJ_P0045433 Dll1 protein_coding protein_coding MGP_CASTEiJ_T0045434.1 MGP_CASTEiJ_G0022416.1 mouse_genomes_project 17 13021584 13022449 - Dll1 protein_coding retained_intron MGP_CASTEiJ_T0045435.1 MGP_CASTEiJ_G0022416.1 mouse_genomes_project 17 13024311 13025887 - Dll1 protein_coding processed_transcript MGP_CASTEiJ_T0045436.1 MGP_CASTEiJ_G0022416.1 mouse_genomes_project 17 13024664 13028128 - Dll1 protein_coding processed_transcript MGP_CASTEiJ_T0045437.1 MGP_CASTEiJ_G0022416.1 mouse_genomes_project 17 13025679 13029153 - Dll1 protein_coding retained_intron MGP_CASTEiJ_T0045438.1 MGP_CASTEiJ_G0022416.1 mouse_genomes_project 17 13028846 13031341 - Dll1 protein_coding processed_transcript MGP_CASTEiJ_T0000955.1 MGP_CASTEiJ_G0000891.1 mouse_genomes_project 17 53486897 53490957 + TEC TEC MGP_CASTEiJ_T0100766.1 MGP_CASTEiJ_G0037679.1 mouse_genomes_project 17 37097098 37097225 - Gm25973 snoRNA snoRNA MGP_CASTEiJ_T0045658.1 MGP_CASTEiJ_G0022512.1 mouse_genomes_project 17 22604994 22605353 + MGP_CASTEiJ_P0045658 Gm5225 protein_coding protein_coding MGP_CASTEiJ_T0047960.1 MGP_CASTEiJ_G0023103.1 mouse_genomes_project 17 57369523 57388810 - MGP_CASTEiJ_P0047960 Vmn2r118 protein_coding protein_coding MGP_CASTEiJ_T0047971.1 MGP_CASTEiJ_G0023113.1 mouse_genomes_project 17 57763901 57772156 - MGP_CASTEiJ_P0047971 Stap2 protein_coding protein_coding MGP_CASTEiJ_T0047471.1 MGP_CASTEiJ_G0022956.1 mouse_genomes_project 17 39666413 39667116 - MGP_CASTEiJ_P0047471 Gm21903 protein_coding protein_coding MGP_CASTEiJ_T0012902.1 MGP_CASTEiJ_G0011065.1 mouse_genomes_project 17 78000786 78001364 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048494.1 MGP_CASTEiJ_G0023295.1 mouse_genomes_project 17 89713926 90248352 + MGP_CASTEiJ_P0048494 Prkce protein_coding protein_coding MGP_CASTEiJ_T0048495.1 MGP_CASTEiJ_G0023295.1 mouse_genomes_project 17 89713960 89725010 + MGP_CASTEiJ_P0048495 Prkce protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048496.1 MGP_CASTEiJ_G0023295.1 mouse_genomes_project 17 89714315 90245764 + MGP_CASTEiJ_P0048496 Prkce protein_coding protein_coding MGP_CASTEiJ_T0048497.1 MGP_CASTEiJ_G0023295.1 mouse_genomes_project 17 90061262 90068286 + Prkce protein_coding retained_intron MGP_CASTEiJ_T0048498.1 MGP_CASTEiJ_G0023295.1 mouse_genomes_project 17 90064022 90068631 + Prkce protein_coding retained_intron MGP_CASTEiJ_T0047474.1 MGP_CASTEiJ_G0022959.1 mouse_genomes_project 17 40936005 40937597 - MGP_CASTEiJ_P0047474 Pgk2 protein_coding protein_coding MGP_CASTEiJ_T0047500.1 MGP_CASTEiJ_G0022976.1 mouse_genomes_project 17 43474584 43501411 - MGP_CASTEiJ_P0047500 Adgrf2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047501.1 MGP_CASTEiJ_G0022976.1 mouse_genomes_project 17 43490849 43528904 - MGP_CASTEiJ_P0047501 Adgrf2 protein_coding protein_coding MGP_CASTEiJ_T0012872.1 MGP_CASTEiJ_G0011035.1 mouse_genomes_project 17 38432093 38432955 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0102148.1 MGP_CASTEiJ_G0038873.1 mouse_genomes_project 17 34586059 34587455 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045932.1 MGP_CASTEiJ_G0022578.1 mouse_genomes_project 17 24051377 24053659 - MGP_CASTEiJ_P0045932 Tpsab1 protein_coding protein_coding MGP_CASTEiJ_T0045933.1 MGP_CASTEiJ_G0022578.1 mouse_genomes_project 17 24051378 24053694 - Tpsab1 protein_coding processed_transcript MGP_CASTEiJ_T0046206.1 MGP_CASTEiJ_G0022644.1 mouse_genomes_project 17 26351021 26437556 - MGP_CASTEiJ_P0046206 Grm4 protein_coding protein_coding MGP_CASTEiJ_T0046207.1 MGP_CASTEiJ_G0022644.1 mouse_genomes_project 17 26354522 26447488 - MGP_CASTEiJ_P0046207 Grm4 protein_coding protein_coding MGP_CASTEiJ_T0046208.1 MGP_CASTEiJ_G0022644.1 mouse_genomes_project 17 26379952 26403073 - Grm4 protein_coding retained_intron MGP_CASTEiJ_T0046209.1 MGP_CASTEiJ_G0022644.1 mouse_genomes_project 17 26381424 26402824 - Grm4 protein_coding processed_transcript MGP_CASTEiJ_T0012897.1 MGP_CASTEiJ_G0011060.1 mouse_genomes_project 17 72878815 72879252 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0047869.1 MGP_CASTEiJ_G0023077.1 mouse_genomes_project 17 49710467 49719648 + MGP_CASTEiJ_P0047869 Treml1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047870.1 MGP_CASTEiJ_G0023077.1 mouse_genomes_project 17 49711252 49719640 + MGP_CASTEiJ_P0047870 Treml1 protein_coding protein_coding MGP_CASTEiJ_T0046483.1 MGP_CASTEiJ_G0022707.1 mouse_genomes_project 17 30528253 30532628 - MGP_CASTEiJ_P0046483 Tff2 protein_coding protein_coding MGP_CASTEiJ_T0046045.1 MGP_CASTEiJ_G0022605.1 mouse_genomes_project 17 24627372 24629071 + MGP_CASTEiJ_P0046045 Mettl26 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046046.1 MGP_CASTEiJ_G0022605.1 mouse_genomes_project 17 24627408 24629080 + MGP_CASTEiJ_P0046046 Mettl26 protein_coding protein_coding MGP_CASTEiJ_T0046047.1 MGP_CASTEiJ_G0022605.1 mouse_genomes_project 17 24627409 24629080 + MGP_CASTEiJ_P0046047 Mettl26 protein_coding protein_coding MGP_CASTEiJ_T0046048.1 MGP_CASTEiJ_G0022605.1 mouse_genomes_project 17 24627438 24637827 + MGP_CASTEiJ_P0046048 Mettl26 protein_coding protein_coding MGP_CASTEiJ_T0046049.1 MGP_CASTEiJ_G0022605.1 mouse_genomes_project 17 24627438 24628908 + MGP_CASTEiJ_P0046049 Mettl26 protein_coding protein_coding MGP_CASTEiJ_T0047693.1 MGP_CASTEiJ_G0023023.1 mouse_genomes_project 17 47520182 47520716 - MGP_CASTEiJ_P0047693 Gm5093 protein_coding protein_coding MGP_CASTEiJ_T0101746.1 MGP_CASTEiJ_G0038548.1 mouse_genomes_project 17 74104001 74136012 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0006710.1 MGP_CASTEiJ_G0005543.1 mouse_genomes_project 17 2993148 2998720 + 3300005D01Rik lincRNA lincRNA MGP_CASTEiJ_T0006711.1 MGP_CASTEiJ_G0005543.1 mouse_genomes_project 17 2993190 2998875 + 3300005D01Rik lincRNA lincRNA MGP_CASTEiJ_T0006712.1 MGP_CASTEiJ_G0005543.1 mouse_genomes_project 17 2993982 2999067 + 3300005D01Rik lincRNA lincRNA MGP_CASTEiJ_T0006713.1 MGP_CASTEiJ_G0005543.1 mouse_genomes_project 17 2994143 2998721 + 3300005D01Rik lincRNA lincRNA MGP_CASTEiJ_T0047798.1 MGP_CASTEiJ_G0023059.1 mouse_genomes_project 17 48895670 48897209 - MGP_CASTEiJ_P0047798 Tomm6 protein_coding protein_coding MGP_CASTEiJ_T0047800.1 MGP_CASTEiJ_G0023059.1 mouse_genomes_project 17 48895764 48897412 - Tomm6 protein_coding retained_intron MGP_CASTEiJ_T0047801.1 MGP_CASTEiJ_G0023059.1 mouse_genomes_project 17 48895764 48897094 - MGP_CASTEiJ_P0047801 Tomm6 protein_coding protein_coding MGP_CASTEiJ_T0047102.1 MGP_CASTEiJ_G0022843.1 mouse_genomes_project 17 34967135 34971404 + MGP_CASTEiJ_P0047102 Gpank1 protein_coding protein_coding MGP_CASTEiJ_T0047103.1 MGP_CASTEiJ_G0022843.1 mouse_genomes_project 17 34967136 34971395 + MGP_CASTEiJ_P0047103 Gpank1 protein_coding protein_coding MGP_CASTEiJ_T0047104.1 MGP_CASTEiJ_G0022843.1 mouse_genomes_project 17 34967314 34967997 + Gpank1 protein_coding processed_transcript MGP_CASTEiJ_T0047105.1 MGP_CASTEiJ_G0022843.1 mouse_genomes_project 17 34968605 34971387 + MGP_CASTEiJ_P0047105 Gpank1 protein_coding protein_coding MGP_CASTEiJ_T0047139.1 MGP_CASTEiJ_G0022850.1 mouse_genomes_project 17 35050641 35052511 + MGP_CASTEiJ_P0047139 Ltb protein_coding protein_coding MGP_CASTEiJ_T0047140.1 MGP_CASTEiJ_G0022850.1 mouse_genomes_project 17 35050725 35052514 + Ltb protein_coding retained_intron MGP_CASTEiJ_T0047141.1 MGP_CASTEiJ_G0022850.1 mouse_genomes_project 17 35050828 35052529 + MGP_CASTEiJ_P0047141 Ltb protein_coding protein_coding MGP_CASTEiJ_T0099549.1 MGP_CASTEiJ_G0036462.1 mouse_genomes_project 17 87680378 87680483 - Gm24492 snRNA snRNA MGP_CASTEiJ_T0048415.1 MGP_CASTEiJ_G0023261.1 mouse_genomes_project 17 83370416 83383588 + MGP_CASTEiJ_P0048415 Ttc39d protein_coding protein_coding MGP_CASTEiJ_T0048416.1 MGP_CASTEiJ_G0023261.1 mouse_genomes_project 17 83381565 83383587 + MGP_CASTEiJ_P0048416 Ttc39d protein_coding protein_coding MGP_CASTEiJ_T0048061.1 MGP_CASTEiJ_G0023140.1 mouse_genomes_project 17 58544139 58547880 - MGP_CASTEiJ_P0048061 Vmac protein_coding protein_coding MGP_CASTEiJ_T0048062.1 MGP_CASTEiJ_G0023140.1 mouse_genomes_project 17 58544139 58547103 - MGP_CASTEiJ_P0048062 Vmac protein_coding protein_coding MGP_CASTEiJ_T0046077.1 MGP_CASTEiJ_G0022611.1 mouse_genomes_project 17 24714217 24728184 + MGP_CASTEiJ_P0046077 D630044L22Rik protein_coding protein_coding MGP_CASTEiJ_T0046924.1 MGP_CASTEiJ_G0022808.1 mouse_genomes_project 17 34394344 34396315 - Egfl8 protein_coding retained_intron MGP_CASTEiJ_T0046925.1 MGP_CASTEiJ_G0022808.1 mouse_genomes_project 17 34394345 34396966 - MGP_CASTEiJ_P0046925 Egfl8 protein_coding protein_coding MGP_CASTEiJ_T0046926.1 MGP_CASTEiJ_G0022808.1 mouse_genomes_project 17 34394349 34396966 - MGP_CASTEiJ_P0046926 Egfl8 protein_coding protein_coding MGP_CASTEiJ_T0046927.1 MGP_CASTEiJ_G0022808.1 mouse_genomes_project 17 34394772 34396783 - MGP_CASTEiJ_P0046927 Egfl8 protein_coding protein_coding MGP_CASTEiJ_T0046928.1 MGP_CASTEiJ_G0022808.1 mouse_genomes_project 17 34395159 34396951 - Egfl8 protein_coding retained_intron MGP_CASTEiJ_T0046929.1 MGP_CASTEiJ_G0022808.1 mouse_genomes_project 17 34395764 34396316 - Egfl8 protein_coding retained_intron MGP_CASTEiJ_T0046374.1 MGP_CASTEiJ_G0022680.1 mouse_genomes_project 17 28071917 28112148 - MGP_CASTEiJ_P0046374 Stk38 protein_coding protein_coding MGP_CASTEiJ_T0046375.1 MGP_CASTEiJ_G0022680.1 mouse_genomes_project 17 28072049 28074125 - Stk38 protein_coding processed_transcript MGP_CASTEiJ_T0046376.1 MGP_CASTEiJ_G0022680.1 mouse_genomes_project 17 28073284 28112148 - MGP_CASTEiJ_P0046376 Stk38 protein_coding protein_coding MGP_CASTEiJ_T0046377.1 MGP_CASTEiJ_G0022680.1 mouse_genomes_project 17 28073986 28084635 - Stk38 protein_coding retained_intron MGP_CASTEiJ_T0046378.1 MGP_CASTEiJ_G0022680.1 mouse_genomes_project 17 28074139 28075767 - Stk38 protein_coding processed_transcript MGP_CASTEiJ_T0046379.1 MGP_CASTEiJ_G0022680.1 mouse_genomes_project 17 28075329 28084926 - Stk38 protein_coding retained_intron MGP_CASTEiJ_T0046380.1 MGP_CASTEiJ_G0022680.1 mouse_genomes_project 17 28075390 28082237 - Stk38 protein_coding processed_transcript MGP_CASTEiJ_T0046381.1 MGP_CASTEiJ_G0022680.1 mouse_genomes_project 17 28075390 28082772 - Stk38 protein_coding processed_transcript MGP_CASTEiJ_T0046382.1 MGP_CASTEiJ_G0022680.1 mouse_genomes_project 17 28075618 28082522 - Stk38 protein_coding processed_transcript MGP_CASTEiJ_T0046383.1 MGP_CASTEiJ_G0022680.1 mouse_genomes_project 17 28078440 28082507 - Stk38 protein_coding processed_transcript MGP_CASTEiJ_T0046384.1 MGP_CASTEiJ_G0022680.1 mouse_genomes_project 17 28082527 28112156 - Stk38 protein_coding processed_transcript MGP_CASTEiJ_T0046385.1 MGP_CASTEiJ_G0022680.1 mouse_genomes_project 17 28085998 28102179 - Stk38 protein_coding retained_intron MGP_CASTEiJ_T0046386.1 MGP_CASTEiJ_G0022680.1 mouse_genomes_project 17 28090372 28093834 - Stk38 protein_coding processed_transcript MGP_CASTEiJ_T0046387.1 MGP_CASTEiJ_G0022680.1 mouse_genomes_project 17 28093820 28111946 - Stk38 protein_coding processed_transcript MGP_CASTEiJ_T0046388.1 MGP_CASTEiJ_G0022680.1 mouse_genomes_project 17 28099685 28112107 - Stk38 protein_coding processed_transcript MGP_CASTEiJ_T0048320.1 MGP_CASTEiJ_G0023226.1 mouse_genomes_project 17 76598919 76669107 - MGP_CASTEiJ_P0048320 Xdh protein_coding protein_coding MGP_CASTEiJ_T0045474.1 MGP_CASTEiJ_G0022425.1 mouse_genomes_project 17 15137719 15201758 + MGP_CASTEiJ_P0045474 Lix1 protein_coding protein_coding MGP_CASTEiJ_T0045475.1 MGP_CASTEiJ_G0022425.1 mouse_genomes_project 17 15190597 15201758 + Lix1 protein_coding processed_transcript MGP_CASTEiJ_T0046139.1 MGP_CASTEiJ_G0022624.1 mouse_genomes_project 17 25108218 25109001 - MGP_CASTEiJ_P0046139 protein_coding protein_coding MGP_CASTEiJ_T0046141.1 MGP_CASTEiJ_G0022624.1 mouse_genomes_project 17 25108259 25108865 - protein_coding retained_intron MGP_CASTEiJ_T0046232.1 MGP_CASTEiJ_G0022650.1 mouse_genomes_project 17 26653996 26654871 + Pacsin1 protein_coding processed_transcript MGP_CASTEiJ_T0046233.1 MGP_CASTEiJ_G0022650.1 mouse_genomes_project 17 26654046 26684085 + MGP_CASTEiJ_P0046233 Pacsin1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0102154.1 MGP_CASTEiJ_G0038879.1 mouse_genomes_project 17 36295703 36296630 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0102127.1 MGP_CASTEiJ_G0038852.1 mouse_genomes_project 17 19350286 19350799 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0048251.1 MGP_CASTEiJ_G0023205.1 mouse_genomes_project 17 73483077 73483566 + MGP_CASTEiJ_P0048251 Gm16519 protein_coding protein_coding MGP_CASTEiJ_T0003639.1 MGP_CASTEiJ_G0003284.1 mouse_genomes_project 17 37182806 37192845 + 1700031A10Rik antisense antisense MGP_CASTEiJ_T0047404.1 MGP_CASTEiJ_G0022907.1 mouse_genomes_project 17 37312515 37345353 + MGP_CASTEiJ_P0047404 Gabbr1 protein_coding protein_coding MGP_CASTEiJ_T0047405.1 MGP_CASTEiJ_G0022907.1 mouse_genomes_project 17 37312569 37344576 + MGP_CASTEiJ_P0047405 Gabbr1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047406.1 MGP_CASTEiJ_G0022907.1 mouse_genomes_project 17 37312577 37317874 + MGP_CASTEiJ_P0047406 Gabbr1 protein_coding protein_coding MGP_CASTEiJ_T0047407.1 MGP_CASTEiJ_G0022907.1 mouse_genomes_project 17 37312748 37313390 + Gabbr1 protein_coding retained_intron MGP_CASTEiJ_T0047408.1 MGP_CASTEiJ_G0022907.1 mouse_genomes_project 17 37313117 37317874 + MGP_CASTEiJ_P0047408 Gabbr1 protein_coding protein_coding MGP_CASTEiJ_T0047409.1 MGP_CASTEiJ_G0022907.1 mouse_genomes_project 17 37315128 37319534 + Gabbr1 protein_coding processed_transcript MGP_CASTEiJ_T0047410.1 MGP_CASTEiJ_G0022907.1 mouse_genomes_project 17 37319037 37344590 + MGP_CASTEiJ_P0047410 Gabbr1 protein_coding protein_coding MGP_CASTEiJ_T0047411.1 MGP_CASTEiJ_G0022907.1 mouse_genomes_project 17 37319080 37324761 + MGP_CASTEiJ_P0047411 Gabbr1 protein_coding protein_coding MGP_CASTEiJ_T0047412.1 MGP_CASTEiJ_G0022907.1 mouse_genomes_project 17 37324112 37325268 + Gabbr1 protein_coding retained_intron MGP_CASTEiJ_T0047413.1 MGP_CASTEiJ_G0022907.1 mouse_genomes_project 17 37333349 37335225 + Gabbr1 protein_coding retained_intron MGP_CASTEiJ_T0047414.1 MGP_CASTEiJ_G0022907.1 mouse_genomes_project 17 37340736 37342508 + Gabbr1 protein_coding retained_intron MGP_CASTEiJ_T0046217.1 MGP_CASTEiJ_G0022647.1 mouse_genomes_project 17 26508076 26510226 - MGP_CASTEiJ_P0046217 AI413582 protein_coding protein_coding MGP_CASTEiJ_T0046218.1 MGP_CASTEiJ_G0022647.1 mouse_genomes_project 17 26508272 26510202 - MGP_CASTEiJ_P0046218 AI413582 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046219.1 MGP_CASTEiJ_G0022647.1 mouse_genomes_project 17 26508274 26510243 - AI413582 protein_coding retained_intron MGP_CASTEiJ_T0046220.1 MGP_CASTEiJ_G0022647.1 mouse_genomes_project 17 26509183 26510161 - AI413582 protein_coding processed_transcript MGP_CASTEiJ_T0012861.1 MGP_CASTEiJ_G0011024.1 mouse_genomes_project 17 36610436 36610999 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045758.1 MGP_CASTEiJ_G0022533.1 mouse_genomes_project 17 23157771 23165904 - MGP_CASTEiJ_P0045758 Rab26 protein_coding protein_coding MGP_CASTEiJ_T0045759.1 MGP_CASTEiJ_G0022533.1 mouse_genomes_project 17 23161245 23166066 - MGP_CASTEiJ_P0045759 Rab26 protein_coding protein_coding MGP_CASTEiJ_T0045760.1 MGP_CASTEiJ_G0022533.1 mouse_genomes_project 17 23161256 23165890 - Rab26 protein_coding retained_intron MGP_CASTEiJ_T0045761.1 MGP_CASTEiJ_G0022533.1 mouse_genomes_project 17 23161512 23162141 - Rab26 protein_coding retained_intron MGP_CASTEiJ_T0045762.1 MGP_CASTEiJ_G0022533.1 mouse_genomes_project 17 23161734 23166388 - MGP_CASTEiJ_P0045762 Rab26 protein_coding protein_coding MGP_CASTEiJ_T0047939.1 MGP_CASTEiJ_G0023093.1 mouse_genomes_project 17 55047587 55131562 - MGP_CASTEiJ_P0047939 Efhb protein_coding protein_coding MGP_CASTEiJ_T0045832.1 MGP_CASTEiJ_G0022558.1 mouse_genomes_project 17 23565612 23566785 + MGP_CASTEiJ_P0045832 Mrps34 protein_coding protein_coding MGP_CASTEiJ_T0045833.1 MGP_CASTEiJ_G0022558.1 mouse_genomes_project 17 23565619 23568008 + MGP_CASTEiJ_P0045833 Mrps34 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045834.1 MGP_CASTEiJ_G0022558.1 mouse_genomes_project 17 23565631 23566612 + Mrps34 protein_coding retained_intron MGP_CASTEiJ_T0046730.1 MGP_CASTEiJ_G0022769.1 mouse_genomes_project 17 33513464 33516207 + MGP_CASTEiJ_P0046730 Daxx protein_coding protein_coding MGP_CASTEiJ_T0046731.1 MGP_CASTEiJ_G0022769.1 mouse_genomes_project 17 33513495 33520275 + MGP_CASTEiJ_P0046731 Daxx protein_coding protein_coding MGP_CASTEiJ_T0046732.1 MGP_CASTEiJ_G0022769.1 mouse_genomes_project 17 33513548 33516296 + MGP_CASTEiJ_P0046732 Daxx protein_coding protein_coding MGP_CASTEiJ_T0046733.1 MGP_CASTEiJ_G0022769.1 mouse_genomes_project 17 33513565 33520202 + MGP_CASTEiJ_P0046733 Daxx protein_coding protein_coding MGP_CASTEiJ_T0046734.1 MGP_CASTEiJ_G0022769.1 mouse_genomes_project 17 33513651 33520267 + MGP_CASTEiJ_P0046734 Daxx protein_coding protein_coding MGP_CASTEiJ_T0046735.1 MGP_CASTEiJ_G0022769.1 mouse_genomes_project 17 33514327 33516681 + Daxx protein_coding retained_intron MGP_CASTEiJ_T0046736.1 MGP_CASTEiJ_G0022769.1 mouse_genomes_project 17 33514476 33520267 + MGP_CASTEiJ_P0046736 Daxx protein_coding protein_coding MGP_CASTEiJ_T0046737.1 MGP_CASTEiJ_G0022769.1 mouse_genomes_project 17 33517521 33518673 + Daxx protein_coding processed_transcript MGP_CASTEiJ_T0046738.1 MGP_CASTEiJ_G0022769.1 mouse_genomes_project 17 33518232 33520202 + Daxx protein_coding processed_transcript MGP_CASTEiJ_T0046940.1 MGP_CASTEiJ_G0022810.1 mouse_genomes_project 17 34412622 34416914 + MGP_CASTEiJ_P0046940 Prrt1 protein_coding protein_coding MGP_CASTEiJ_T0046941.1 MGP_CASTEiJ_G0022810.1 mouse_genomes_project 17 34414493 34416185 + Prrt1 protein_coding retained_intron MGP_CASTEiJ_T0046365.1 MGP_CASTEiJ_G0022678.1 mouse_genomes_project 17 28037026 28042146 - MGP_CASTEiJ_P0046365 Pxt1 protein_coding protein_coding MGP_CASTEiJ_T0047369.1 MGP_CASTEiJ_G0022899.1 mouse_genomes_project 17 37202717 37207786 + MGP_CASTEiJ_P0047369 Rnf39 protein_coding protein_coding MGP_CASTEiJ_T0047370.1 MGP_CASTEiJ_G0022899.1 mouse_genomes_project 17 37202854 37205415 + MGP_CASTEiJ_P0047370 Rnf39 protein_coding protein_coding MGP_CASTEiJ_T0047371.1 MGP_CASTEiJ_G0022899.1 mouse_genomes_project 17 37204877 37207086 + MGP_CASTEiJ_P0047371 Rnf39 protein_coding protein_coding MGP_CASTEiJ_T0048012.1 MGP_CASTEiJ_G0023130.1 mouse_genomes_project 17 58133440 58167068 + MGP_CASTEiJ_P0048012 Kdm4b protein_coding protein_coding MGP_CASTEiJ_T0048013.1 MGP_CASTEiJ_G0023130.1 mouse_genomes_project 17 58133452 58216811 + MGP_CASTEiJ_P0048013 Kdm4b protein_coding protein_coding MGP_CASTEiJ_T0048014.1 MGP_CASTEiJ_G0023130.1 mouse_genomes_project 17 58133469 58216806 + MGP_CASTEiJ_P0048014 Kdm4b protein_coding protein_coding MGP_CASTEiJ_T0048015.1 MGP_CASTEiJ_G0023130.1 mouse_genomes_project 17 58184483 58198141 + Kdm4b protein_coding processed_transcript MGP_CASTEiJ_T0048016.1 MGP_CASTEiJ_G0023130.1 mouse_genomes_project 17 58207425 58207694 + Kdm4b protein_coding processed_transcript MGP_CASTEiJ_T0048017.1 MGP_CASTEiJ_G0023130.1 mouse_genomes_project 17 58207828 58216817 + MGP_CASTEiJ_P0048017 Kdm4b protein_coding protein_coding MGP_CASTEiJ_T0009923.1 MGP_CASTEiJ_G0008111.1 mouse_genomes_project 17 28750039 28750103 + Mir7667 miRNA miRNA MGP_CASTEiJ_T0045505.1 MGP_CASTEiJ_G0022440.1 mouse_genomes_project 17 16600220 17140865 + MGP_CASTEiJ_P0045505 protein_coding protein_coding MGP_CASTEiJ_T0047239.1 MGP_CASTEiJ_G0022872.1 mouse_genomes_project 17 35923556 35943262 + MGP_CASTEiJ_P0047239 Mdc1 protein_coding protein_coding MGP_CASTEiJ_T0047240.1 MGP_CASTEiJ_G0022872.1 mouse_genomes_project 17 35923699 35943268 + MGP_CASTEiJ_P0047240 Mdc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047241.1 MGP_CASTEiJ_G0022872.1 mouse_genomes_project 17 35923717 35930019 + MGP_CASTEiJ_P0047241 Mdc1 protein_coding protein_coding MGP_CASTEiJ_T0047862.1 MGP_CASTEiJ_G0023075.1 mouse_genomes_project 17 49658010 49671806 + MGP_CASTEiJ_P0047862 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047863.1 MGP_CASTEiJ_G0023075.1 mouse_genomes_project 17 49665494 49674657 + MGP_CASTEiJ_P0047863 protein_coding protein_coding MGP_CASTEiJ_T0047864.1 MGP_CASTEiJ_G0023075.1 mouse_genomes_project 17 49665494 49673148 + MGP_CASTEiJ_P0047864 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012873.1 MGP_CASTEiJ_G0011036.1 mouse_genomes_project 17 38804876 38805006 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006721.1 MGP_CASTEiJ_G0005550.1 mouse_genomes_project 17 12883298 12892482 - Gm5091 lincRNA lincRNA MGP_CASTEiJ_T0006757.1 MGP_CASTEiJ_G0005579.1 mouse_genomes_project 17 33509581 33510729 + Platr17 lincRNA lincRNA MGP_CASTEiJ_T0045236.1 MGP_CASTEiJ_G0022359.1 mouse_genomes_project 17 3130348 3234115 + MGP_CASTEiJ_P0045236 Synj2 protein_coding protein_coding MGP_CASTEiJ_T0045237.1 MGP_CASTEiJ_G0022359.1 mouse_genomes_project 17 3130348 3228360 + MGP_CASTEiJ_P0045237 Synj2 protein_coding protein_coding MGP_CASTEiJ_T0045238.1 MGP_CASTEiJ_G0022359.1 mouse_genomes_project 17 3130425 3234950 + MGP_CASTEiJ_P0045238 Synj2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045239.1 MGP_CASTEiJ_G0022359.1 mouse_genomes_project 17 3130450 3234115 + MGP_CASTEiJ_P0045239 Synj2 protein_coding protein_coding MGP_CASTEiJ_T0045240.1 MGP_CASTEiJ_G0022359.1 mouse_genomes_project 17 3168675 3221864 + MGP_CASTEiJ_P0045240 Synj2 protein_coding protein_coding MGP_CASTEiJ_T0045241.1 MGP_CASTEiJ_G0022359.1 mouse_genomes_project 17 3168730 3239841 + MGP_CASTEiJ_P0045241 Synj2 protein_coding protein_coding MGP_CASTEiJ_T0045242.1 MGP_CASTEiJ_G0022359.1 mouse_genomes_project 17 3168829 3234115 + MGP_CASTEiJ_P0045242 Synj2 protein_coding protein_coding MGP_CASTEiJ_T0045243.1 MGP_CASTEiJ_G0022359.1 mouse_genomes_project 17 3181104 3234901 + MGP_CASTEiJ_P0045243 Synj2 protein_coding protein_coding MGP_CASTEiJ_T0045244.1 MGP_CASTEiJ_G0022359.1 mouse_genomes_project 17 3183184 3239841 + MGP_CASTEiJ_P0045244 Synj2 protein_coding protein_coding MGP_CASTEiJ_T0045245.1 MGP_CASTEiJ_G0022359.1 mouse_genomes_project 17 3188354 3233886 + MGP_CASTEiJ_P0045245 Synj2 protein_coding protein_coding MGP_CASTEiJ_T0045246.1 MGP_CASTEiJ_G0022359.1 mouse_genomes_project 17 3189183 3216208 + MGP_CASTEiJ_P0045246 Synj2 protein_coding protein_coding MGP_CASTEiJ_T0045247.1 MGP_CASTEiJ_G0022359.1 mouse_genomes_project 17 3202254 3228496 + MGP_CASTEiJ_P0045247 Synj2 protein_coding protein_coding MGP_CASTEiJ_T0045248.1 MGP_CASTEiJ_G0022359.1 mouse_genomes_project 17 3202271 3233964 + MGP_CASTEiJ_P0045248 Synj2 protein_coding protein_coding MGP_CASTEiJ_T0045249.1 MGP_CASTEiJ_G0022359.1 mouse_genomes_project 17 3202286 3205165 + Synj2 protein_coding processed_transcript MGP_CASTEiJ_T0045250.1 MGP_CASTEiJ_G0022359.1 mouse_genomes_project 17 3209413 3233931 + MGP_CASTEiJ_P0045250 Synj2 protein_coding protein_coding MGP_CASTEiJ_T0045251.1 MGP_CASTEiJ_G0022359.1 mouse_genomes_project 17 3220649 3233020 + MGP_CASTEiJ_P0045251 Synj2 protein_coding protein_coding MGP_CASTEiJ_T0046599.1 MGP_CASTEiJ_G0022732.1 mouse_genomes_project 17 32018027 32041667 + MGP_CASTEiJ_P0046599 Cyp4f17 protein_coding protein_coding MGP_CASTEiJ_T0047496.1 MGP_CASTEiJ_G0022975.1 mouse_genomes_project 17 43426761 43471734 - MGP_CASTEiJ_P0047496 Adgrf4 protein_coding protein_coding MGP_CASTEiJ_T0047497.1 MGP_CASTEiJ_G0022975.1 mouse_genomes_project 17 43426764 43471734 - MGP_CASTEiJ_P0047497 Adgrf4 protein_coding protein_coding MGP_CASTEiJ_T0047498.1 MGP_CASTEiJ_G0022975.1 mouse_genomes_project 17 43426962 43471712 - MGP_CASTEiJ_P0047498 Adgrf4 protein_coding protein_coding MGP_CASTEiJ_T0047499.1 MGP_CASTEiJ_G0022975.1 mouse_genomes_project 17 43444783 43471723 - MGP_CASTEiJ_P0047499 Adgrf4 protein_coding protein_coding MGP_CASTEiJ_T0012838.1 MGP_CASTEiJ_G0011001.1 mouse_genomes_project 17 13237190 13237448 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046189.1 MGP_CASTEiJ_G0022638.1 mouse_genomes_project 17 25842419 25912736 + MGP_CASTEiJ_P0046189 Ggnbp1 protein_coding protein_coding MGP_CASTEiJ_T0046190.1 MGP_CASTEiJ_G0022638.1 mouse_genomes_project 17 25892607 25901169 + Ggnbp1 protein_coding retained_intron MGP_CASTEiJ_T0046191.1 MGP_CASTEiJ_G0022638.1 mouse_genomes_project 17 25892618 25912736 + MGP_CASTEiJ_P0046191 Ggnbp1 protein_coding protein_coding MGP_CASTEiJ_T0046192.1 MGP_CASTEiJ_G0022638.1 mouse_genomes_project 17 25892634 25897065 + Ggnbp1 protein_coding processed_transcript MGP_CASTEiJ_T0046197.1 MGP_CASTEiJ_G0022638.1 mouse_genomes_project 17 25905681 25912736 + MGP_CASTEiJ_P0046197 Ggnbp1 protein_coding protein_coding MGP_CASTEiJ_T0046198.1 MGP_CASTEiJ_G0022638.1 mouse_genomes_project 17 25906799 25911150 + Ggnbp1 protein_coding retained_intron MGP_CASTEiJ_T0046631.1 MGP_CASTEiJ_G0022743.1 mouse_genomes_project 17 32582153 32596319 + MGP_CASTEiJ_P0046631 Zfp472 protein_coding protein_coding MGP_CASTEiJ_T0047184.1 MGP_CASTEiJ_G0022865.1 mouse_genomes_project 17 35700875 35709616 - MGP_CASTEiJ_P0047184 Dpcr1 protein_coding protein_coding MGP_CASTEiJ_T0046699.1 MGP_CASTEiJ_G0022763.1 mouse_genomes_project 17 33354070 33374484 - MGP_CASTEiJ_P0046699 Rab11b protein_coding protein_coding MGP_CASTEiJ_T0046700.1 MGP_CASTEiJ_G0022763.1 mouse_genomes_project 17 33362909 33374438 - Rab11b protein_coding processed_transcript MGP_CASTEiJ_T0009907.1 MGP_CASTEiJ_G0008095.1 mouse_genomes_project 17 23236108 23236202 + Gm24589 miRNA miRNA MGP_CASTEiJ_T0047673.1 MGP_CASTEiJ_G0023019.1 mouse_genomes_project 17 47406026 47426905 - MGP_CASTEiJ_P0047673 Abcc10 protein_coding protein_coding MGP_CASTEiJ_T0047674.1 MGP_CASTEiJ_G0023019.1 mouse_genomes_project 17 47406035 47426858 - MGP_CASTEiJ_P0047674 Abcc10 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047675.1 MGP_CASTEiJ_G0023019.1 mouse_genomes_project 17 47406038 47426861 - MGP_CASTEiJ_P0047675 Abcc10 protein_coding protein_coding MGP_CASTEiJ_T0047676.1 MGP_CASTEiJ_G0023019.1 mouse_genomes_project 17 47406226 47424616 - MGP_CASTEiJ_P0047676 Abcc10 protein_coding protein_coding MGP_CASTEiJ_T0047677.1 MGP_CASTEiJ_G0023019.1 mouse_genomes_project 17 47415579 47422478 - MGP_CASTEiJ_P0047677 Abcc10 protein_coding protein_coding MGP_CASTEiJ_T0047678.1 MGP_CASTEiJ_G0023019.1 mouse_genomes_project 17 47421703 47426879 - Abcc10 protein_coding retained_intron MGP_CASTEiJ_T0047679.1 MGP_CASTEiJ_G0023019.1 mouse_genomes_project 17 47423402 47427234 - Abcc10 protein_coding processed_transcript MGP_CASTEiJ_T0006766.1 MGP_CASTEiJ_G0005586.1 mouse_genomes_project 17 35810305 35812379 - Gm20443 lincRNA lincRNA MGP_CASTEiJ_T0047696.1 MGP_CASTEiJ_G0023025.1 mouse_genomes_project 17 47581001 47583831 + MGP_CASTEiJ_P0047696 Dnph1 protein_coding protein_coding MGP_CASTEiJ_T0102151.1 MGP_CASTEiJ_G0038876.1 mouse_genomes_project 17 35310153 35334458 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0048108.1 MGP_CASTEiJ_G0023167.1 mouse_genomes_project 17 59166363 59224520 + MGP_CASTEiJ_P0048108 Vav1 protein_coding protein_coding MGP_CASTEiJ_T0048109.1 MGP_CASTEiJ_G0023167.1 mouse_genomes_project 17 59166363 59224601 + MGP_CASTEiJ_P0048109 Vav1 protein_coding protein_coding MGP_CASTEiJ_T0048110.1 MGP_CASTEiJ_G0023167.1 mouse_genomes_project 17 59166390 59224525 + MGP_CASTEiJ_P0048110 Vav1 protein_coding protein_coding MGP_CASTEiJ_T0048111.1 MGP_CASTEiJ_G0023167.1 mouse_genomes_project 17 59195219 59199563 + Vav1 protein_coding retained_intron MGP_CASTEiJ_T0048112.1 MGP_CASTEiJ_G0023167.1 mouse_genomes_project 17 59208725 59224523 + Vav1 protein_coding processed_transcript MGP_CASTEiJ_T0046174.1 MGP_CASTEiJ_G0022634.1 mouse_genomes_project 17 25799459 25804226 + MGP_CASTEiJ_P0046174 Phf1 protein_coding protein_coding MGP_CASTEiJ_T0048484.1 MGP_CASTEiJ_G0023289.1 mouse_genomes_project 17 88476919 88519135 + MGP_CASTEiJ_P0048484 Slc3a1 protein_coding protein_coding MGP_CASTEiJ_T0048405.1 MGP_CASTEiJ_G0023258.1 mouse_genomes_project 17 83175738 83209178 - MGP_CASTEiJ_P0048405 Hnrnpll protein_coding protein_coding MGP_CASTEiJ_T0048406.1 MGP_CASTEiJ_G0023258.1 mouse_genomes_project 17 83175738 83209071 - MGP_CASTEiJ_P0048406 Hnrnpll protein_coding protein_coding MGP_CASTEiJ_T0048407.1 MGP_CASTEiJ_G0023258.1 mouse_genomes_project 17 83176088 83209071 - MGP_CASTEiJ_P0048407 Hnrnpll protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048408.1 MGP_CASTEiJ_G0023258.1 mouse_genomes_project 17 83176592 83181834 - Hnrnpll protein_coding retained_intron MGP_CASTEiJ_T0048409.1 MGP_CASTEiJ_G0023258.1 mouse_genomes_project 17 83183444 83209038 - Hnrnpll protein_coding retained_intron MGP_CASTEiJ_T0048410.1 MGP_CASTEiJ_G0023258.1 mouse_genomes_project 17 83192110 83208979 - Hnrnpll protein_coding retained_intron MGP_CASTEiJ_T0048411.1 MGP_CASTEiJ_G0023258.1 mouse_genomes_project 17 83198322 83209112 - Hnrnpll protein_coding retained_intron MGP_CASTEiJ_T0099553.1 MGP_CASTEiJ_G0036466.1 mouse_genomes_project 17 92154398 92154505 - Gm23947 snRNA snRNA MGP_CASTEiJ_T0003621.1 MGP_CASTEiJ_G0003270.1 mouse_genomes_project 17 32378572 32379765 + Gm17115 antisense antisense MGP_CASTEiJ_T0046242.1 MGP_CASTEiJ_G0022653.1 mouse_genomes_project 17 26830151 26851146 + MGP_CASTEiJ_P0046242 Snrpc protein_coding protein_coding MGP_CASTEiJ_T0046243.1 MGP_CASTEiJ_G0022653.1 mouse_genomes_project 17 26830311 26851150 + Snrpc protein_coding retained_intron MGP_CASTEiJ_T0046332.1 MGP_CASTEiJ_G0022670.1 mouse_genomes_project 17 27640364 27648704 + MGP_CASTEiJ_P0046332 Lhfpl5 protein_coding protein_coding MGP_CASTEiJ_T0006774.1 MGP_CASTEiJ_G0005594.1 mouse_genomes_project 17 46775907 46835483 + lincRNA lincRNA MGP_CASTEiJ_T0006775.1 MGP_CASTEiJ_G0005594.1 mouse_genomes_project 17 46806196 46842612 + lincRNA lincRNA MGP_CASTEiJ_T0100776.1 MGP_CASTEiJ_G0037689.1 mouse_genomes_project 17 75847676 75847781 + Gm25406 snoRNA snoRNA MGP_CASTEiJ_T0102134.1 MGP_CASTEiJ_G0038859.1 mouse_genomes_project 17 21613223 21613894 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045230.1 MGP_CASTEiJ_G0022355.1 mouse_genomes_project 17 2584497 2614143 - MGP_CASTEiJ_P0045230 Tmem242 protein_coding protein_coding MGP_CASTEiJ_T0045232.1 MGP_CASTEiJ_G0022355.1 mouse_genomes_project 17 2606172 2614159 - MGP_CASTEiJ_P0045232 Tmem242 protein_coding protein_coding MGP_CASTEiJ_T0045233.1 MGP_CASTEiJ_G0022355.1 mouse_genomes_project 17 2606902 2614156 - MGP_CASTEiJ_P0045233 Tmem242 protein_coding protein_coding MGP_CASTEiJ_T0046842.1 MGP_CASTEiJ_G0022789.1 mouse_genomes_project 17 33879551 33882690 + MGP_CASTEiJ_P0046842 Psmb8 protein_coding protein_coding MGP_CASTEiJ_T0046843.1 MGP_CASTEiJ_G0022789.1 mouse_genomes_project 17 33879620 33883226 + MGP_CASTEiJ_P0046843 Psmb8 protein_coding protein_coding MGP_CASTEiJ_T0046844.1 MGP_CASTEiJ_G0022789.1 mouse_genomes_project 17 33880436 33883196 + Psmb8 protein_coding retained_intron MGP_CASTEiJ_T0048220.1 MGP_CASTEiJ_G0023202.1 mouse_genomes_project 17 71916111 71967248 + MGP_CASTEiJ_P0048220 Akain1 protein_coding protein_coding MGP_CASTEiJ_T0048544.1 MGP_CASTEiJ_G0023311.1 mouse_genomes_project 17 91434424 91481829 - MGP_CASTEiJ_P0048544 Kcnk12 protein_coding protein_coding MGP_CASTEiJ_T0046988.1 MGP_CASTEiJ_G0022820.1 mouse_genomes_project 17 34686795 34708171 - MGP_CASTEiJ_P0046988 C2 protein_coding protein_coding MGP_CASTEiJ_T0046989.1 MGP_CASTEiJ_G0022820.1 mouse_genomes_project 17 34686796 34708237 - MGP_CASTEiJ_P0046989 C2 protein_coding protein_coding MGP_CASTEiJ_T0046990.1 MGP_CASTEiJ_G0022820.1 mouse_genomes_project 17 34686797 34721458 - MGP_CASTEiJ_P0046990 C2 protein_coding protein_coding MGP_CASTEiJ_T0046991.1 MGP_CASTEiJ_G0022820.1 mouse_genomes_project 17 34687865 34688606 - MGP_CASTEiJ_P0046991 C2 protein_coding protein_coding MGP_CASTEiJ_T0046992.1 MGP_CASTEiJ_G0022820.1 mouse_genomes_project 17 34688362 34689146 - C2 protein_coding retained_intron MGP_CASTEiJ_T0046993.1 MGP_CASTEiJ_G0022820.1 mouse_genomes_project 17 34703005 34708112 - C2 protein_coding processed_transcript MGP_CASTEiJ_T0046995.1 MGP_CASTEiJ_G0022820.1 mouse_genomes_project 17 34719262 34721468 - C2 protein_coding processed_transcript MGP_CASTEiJ_T0046996.1 MGP_CASTEiJ_G0022820.1 mouse_genomes_project 17 34719265 34724168 - C2 protein_coding processed_transcript MGP_CASTEiJ_T0102187.1 MGP_CASTEiJ_G0038912.1 mouse_genomes_project 17 55600831 55601380 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045935.1 MGP_CASTEiJ_G0022580.1 mouse_genomes_project 17 24082639 24087862 + MGP_CASTEiJ_P0045935 Tpsg1 protein_coding protein_coding MGP_CASTEiJ_T0045936.1 MGP_CASTEiJ_G0022580.1 mouse_genomes_project 17 24082655 24087571 + MGP_CASTEiJ_P0045936 Tpsg1 protein_coding protein_coding MGP_CASTEiJ_T0045937.1 MGP_CASTEiJ_G0022580.1 mouse_genomes_project 17 24083974 24087862 + MGP_CASTEiJ_P0045937 Tpsg1 protein_coding protein_coding MGP_CASTEiJ_T0045938.1 MGP_CASTEiJ_G0022580.1 mouse_genomes_project 17 24084005 24087864 + MGP_CASTEiJ_P0045938 Tpsg1 protein_coding protein_coding MGP_CASTEiJ_T0045939.1 MGP_CASTEiJ_G0022580.1 mouse_genomes_project 17 24086430 24087807 + MGP_CASTEiJ_P0045939 Tpsg1 protein_coding protein_coding MGP_CASTEiJ_T0046173.1 MGP_CASTEiJ_G0022633.1 mouse_genomes_project 17 25785827 25792440 + MGP_CASTEiJ_P0046173 protein_coding protein_coding MGP_CASTEiJ_T0003636.1 MGP_CASTEiJ_G0003281.1 mouse_genomes_project 17 35772385 35776796 + Gm4577 antisense antisense MGP_CASTEiJ_T0000942.1 MGP_CASTEiJ_G0000879.1 mouse_genomes_project 17 9330641 9337272 - TEC TEC MGP_CASTEiJ_T0006734.1 MGP_CASTEiJ_G0005561.1 mouse_genomes_project 17 24750226 24752843 + 1700022N22Rik lincRNA lincRNA MGP_CASTEiJ_T0045541.1 MGP_CASTEiJ_G0022467.1 mouse_genomes_project 17 19569801 19587796 + MGP_CASTEiJ_P0045541 Zfp51 protein_coding protein_coding MGP_CASTEiJ_T0046265.1 MGP_CASTEiJ_G0022659.1 mouse_genomes_project 17 27192854 27227911 + Zfp523 protein_coding retained_intron MGP_CASTEiJ_T0046266.1 MGP_CASTEiJ_G0022659.1 mouse_genomes_project 17 27192986 27227911 + MGP_CASTEiJ_P0046266 Zfp523 protein_coding protein_coding MGP_CASTEiJ_T0046267.1 MGP_CASTEiJ_G0022659.1 mouse_genomes_project 17 27193065 27227909 + MGP_CASTEiJ_P0046267 Zfp523 protein_coding protein_coding MGP_CASTEiJ_T0046268.1 MGP_CASTEiJ_G0022659.1 mouse_genomes_project 17 27207556 27217211 + Zfp523 protein_coding processed_transcript MGP_CASTEiJ_T0046269.1 MGP_CASTEiJ_G0022659.1 mouse_genomes_project 17 27217195 27224527 + MGP_CASTEiJ_P0046269 Zfp523 protein_coding protein_coding MGP_CASTEiJ_T0046270.1 MGP_CASTEiJ_G0022659.1 mouse_genomes_project 17 27224339 27227187 + MGP_CASTEiJ_P0046270 Zfp523 protein_coding protein_coding MGP_CASTEiJ_T0046271.1 MGP_CASTEiJ_G0022659.1 mouse_genomes_project 17 27224514 27227911 + MGP_CASTEiJ_P0046271 Zfp523 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046272.1 MGP_CASTEiJ_G0022659.1 mouse_genomes_project 17 27226134 27227332 + Zfp523 protein_coding retained_intron MGP_CASTEiJ_T0045470.1 MGP_CASTEiJ_G0022423.1 mouse_genomes_project 17 13434551 13504363 - MGP_CASTEiJ_P0045470 Rgmb protein_coding unknown_likely_coding MGP_CASTEiJ_T0045471.1 MGP_CASTEiJ_G0022423.1 mouse_genomes_project 17 13479553 13499795 - MGP_CASTEiJ_P0045471 Rgmb protein_coding protein_coding MGP_CASTEiJ_T0046128.1 MGP_CASTEiJ_G0022623.1 mouse_genomes_project 17 25071425 25101963 + MGP_CASTEiJ_P0046128 Luc7l protein_coding protein_coding MGP_CASTEiJ_T0046129.1 MGP_CASTEiJ_G0022623.1 mouse_genomes_project 17 25071466 25107439 + MGP_CASTEiJ_P0046129 Luc7l protein_coding protein_coding MGP_CASTEiJ_T0046130.1 MGP_CASTEiJ_G0022623.1 mouse_genomes_project 17 25071471 25099053 + MGP_CASTEiJ_P0046130 Luc7l protein_coding protein_coding MGP_CASTEiJ_T0046131.1 MGP_CASTEiJ_G0022623.1 mouse_genomes_project 17 25071481 25103917 + MGP_CASTEiJ_P0046131 Luc7l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046132.1 MGP_CASTEiJ_G0022623.1 mouse_genomes_project 17 25071481 25103915 + MGP_CASTEiJ_P0046132 Luc7l protein_coding protein_coding MGP_CASTEiJ_T0046133.1 MGP_CASTEiJ_G0022623.1 mouse_genomes_project 17 25071499 25101964 + Luc7l protein_coding retained_intron MGP_CASTEiJ_T0046134.1 MGP_CASTEiJ_G0022623.1 mouse_genomes_project 17 25071514 25101967 + MGP_CASTEiJ_P0046134 Luc7l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046135.1 MGP_CASTEiJ_G0022623.1 mouse_genomes_project 17 25071737 25084887 + MGP_CASTEiJ_P0046135 Luc7l protein_coding protein_coding MGP_CASTEiJ_T0046136.1 MGP_CASTEiJ_G0022623.1 mouse_genomes_project 17 25071900 25072769 + Luc7l protein_coding processed_transcript MGP_CASTEiJ_T0046137.1 MGP_CASTEiJ_G0022623.1 mouse_genomes_project 17 25072143 25107448 + MGP_CASTEiJ_P0046137 Luc7l protein_coding unknown_likely_coding MGP_CASTEiJ_T0046138.1 MGP_CASTEiJ_G0022623.1 mouse_genomes_project 17 25085761 25103893 + MGP_CASTEiJ_P0046138 Luc7l protein_coding protein_coding MGP_CASTEiJ_T0047990.1 MGP_CASTEiJ_G0023118.1 mouse_genomes_project 17 57864059 57886721 + MGP_CASTEiJ_P0047990 Hdgfrp2 protein_coding protein_coding MGP_CASTEiJ_T0047991.1 MGP_CASTEiJ_G0023118.1 mouse_genomes_project 17 57864063 57886706 + MGP_CASTEiJ_P0047991 Hdgfrp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003601.1 MGP_CASTEiJ_G0003255.1 mouse_genomes_project 17 22309109 22314838 + Gm16275 antisense antisense MGP_CASTEiJ_T0048518.1 MGP_CASTEiJ_G0023305.1 mouse_genomes_project 17 90913178 91018836 + MGP_CASTEiJ_P0048518 Ttc7 protein_coding protein_coding MGP_CASTEiJ_T0048519.1 MGP_CASTEiJ_G0023305.1 mouse_genomes_project 17 90913185 90923280 + Ttc7 protein_coding processed_transcript MGP_CASTEiJ_T0048520.1 MGP_CASTEiJ_G0023305.1 mouse_genomes_project 17 90913197 91004371 + MGP_CASTEiJ_P0048520 Ttc7 protein_coding protein_coding MGP_CASTEiJ_T0048521.1 MGP_CASTEiJ_G0023305.1 mouse_genomes_project 17 90913243 90994184 + MGP_CASTEiJ_P0048521 Ttc7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048522.1 MGP_CASTEiJ_G0023305.1 mouse_genomes_project 17 90913414 91017277 + MGP_CASTEiJ_P0048522 Ttc7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048523.1 MGP_CASTEiJ_G0023305.1 mouse_genomes_project 17 90923161 91017152 + MGP_CASTEiJ_P0048523 Ttc7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048524.1 MGP_CASTEiJ_G0023305.1 mouse_genomes_project 17 90939986 90961260 + Ttc7 protein_coding processed_transcript MGP_CASTEiJ_T0048525.1 MGP_CASTEiJ_G0023305.1 mouse_genomes_project 17 90953722 90965437 + Ttc7 protein_coding retained_intron MGP_CASTEiJ_T0048526.1 MGP_CASTEiJ_G0023305.1 mouse_genomes_project 17 90961392 90971071 + Ttc7 protein_coding processed_transcript MGP_CASTEiJ_T0048527.1 MGP_CASTEiJ_G0023305.1 mouse_genomes_project 17 91015918 91018836 + Ttc7 protein_coding processed_transcript MGP_CASTEiJ_T0047623.1 MGP_CASTEiJ_G0023009.1 mouse_genomes_project 17 47213956 47229485 - MGP_CASTEiJ_P0047623 Rsph9 protein_coding protein_coding MGP_CASTEiJ_T0047627.1 MGP_CASTEiJ_G0023009.1 mouse_genomes_project 17 47221199 47237324 - MGP_CASTEiJ_P0047627 Rsph9 protein_coding protein_coding MGP_CASTEiJ_T0047628.1 MGP_CASTEiJ_G0023009.1 mouse_genomes_project 17 47227149 47229450 - Rsph9 protein_coding retained_intron MGP_CASTEiJ_T0047426.1 MGP_CASTEiJ_G0022919.1 mouse_genomes_project 17 37597550 37600978 - MGP_CASTEiJ_P0047426 Olfr99 protein_coding protein_coding MGP_CASTEiJ_T0045222.1 MGP_CASTEiJ_G0022352.1 mouse_genomes_project 17 707103 775083 - MGP_CASTEiJ_P0045222 Nox3 protein_coding protein_coding MGP_CASTEiJ_T0045774.1 MGP_CASTEiJ_G0022540.1 mouse_genomes_project 17 23338659 23344367 - MGP_CASTEiJ_P0045774 Syngr3 protein_coding protein_coding MGP_CASTEiJ_T0045775.1 MGP_CASTEiJ_G0022540.1 mouse_genomes_project 17 23340209 23342614 - Syngr3 protein_coding processed_transcript MGP_CASTEiJ_T0047964.1 MGP_CASTEiJ_G0023107.1 mouse_genomes_project 17 57654685 57660456 + MGP_CASTEiJ_P0047964 Zfp959 protein_coding protein_coding MGP_CASTEiJ_T0098544.1 MGP_CASTEiJ_G0035475.1 mouse_genomes_project 17 81551121 81551232 - Gm22562 rRNA rRNA MGP_CASTEiJ_T0046636.1 MGP_CASTEiJ_G0022745.1 mouse_genomes_project 17 32640135 32657349 - MGP_CASTEiJ_P0046636 Zfp763 protein_coding protein_coding MGP_CASTEiJ_T0046637.1 MGP_CASTEiJ_G0022745.1 mouse_genomes_project 17 32643049 32657115 - Zfp763 protein_coding processed_transcript MGP_CASTEiJ_T0102132.1 MGP_CASTEiJ_G0038857.1 mouse_genomes_project 17 21505448 21506179 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0011095.1 MGP_CASTEiJ_G0009283.1 mouse_genomes_project 17 37225160 37225236 - Gm27735 misc_RNA misc_RNA MGP_CASTEiJ_T0047770.1 MGP_CASTEiJ_G0023052.1 mouse_genomes_project 17 48670039 48685406 - MGP_CASTEiJ_P0047770 Taf8 protein_coding protein_coding MGP_CASTEiJ_T0047697.1 MGP_CASTEiJ_G0023026.1 mouse_genomes_project 17 47584784 47585284 - Cul9 protein_coding retained_intron MGP_CASTEiJ_T0047698.1 MGP_CASTEiJ_G0023026.1 mouse_genomes_project 17 47584820 47637224 - MGP_CASTEiJ_P0047698 Cul9 protein_coding protein_coding MGP_CASTEiJ_T0047699.1 MGP_CASTEiJ_G0023026.1 mouse_genomes_project 17 47584825 47603816 - Cul9 protein_coding retained_intron MGP_CASTEiJ_T0047700.1 MGP_CASTEiJ_G0023026.1 mouse_genomes_project 17 47584831 47637137 - Cul9 protein_coding retained_intron MGP_CASTEiJ_T0047701.1 MGP_CASTEiJ_G0023026.1 mouse_genomes_project 17 47586009 47610758 - Cul9 protein_coding retained_intron MGP_CASTEiJ_T0047702.1 MGP_CASTEiJ_G0023026.1 mouse_genomes_project 17 47601552 47605790 - Cul9 protein_coding retained_intron MGP_CASTEiJ_T0047703.1 MGP_CASTEiJ_G0023026.1 mouse_genomes_project 17 47602616 47603722 - Cul9 protein_coding retained_intron MGP_CASTEiJ_T0047704.1 MGP_CASTEiJ_G0023026.1 mouse_genomes_project 17 47602616 47610116 - Cul9 protein_coding retained_intron MGP_CASTEiJ_T0047705.1 MGP_CASTEiJ_G0023026.1 mouse_genomes_project 17 47614167 47627433 - Cul9 protein_coding retained_intron MGP_CASTEiJ_T0047706.1 MGP_CASTEiJ_G0023026.1 mouse_genomes_project 17 47615380 47627693 - Cul9 protein_coding retained_intron MGP_CASTEiJ_T0012898.1 MGP_CASTEiJ_G0011061.1 mouse_genomes_project 17 73414442 73414949 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0047557.1 MGP_CASTEiJ_G0022998.1 mouse_genomes_project 17 46577507 46587806 + MGP_CASTEiJ_P0047557 Nfkbie protein_coding protein_coding MGP_CASTEiJ_T0045536.1 MGP_CASTEiJ_G0022465.1 mouse_genomes_project 17 19498465 19514063 + MGP_CASTEiJ_P0045536 Zfp677 protein_coding protein_coding MGP_CASTEiJ_T0045537.1 MGP_CASTEiJ_G0022465.1 mouse_genomes_project 17 19498465 19514060 + MGP_CASTEiJ_P0045537 Zfp677 protein_coding protein_coding MGP_CASTEiJ_T0100752.1 MGP_CASTEiJ_G0037665.1 mouse_genomes_project 17 9915306 9915446 + Gm24794 snoRNA snoRNA MGP_CASTEiJ_T0047417.1 MGP_CASTEiJ_G0022910.1 mouse_genomes_project 17 37430619 37433284 - MGP_CASTEiJ_P0047417 Olfr93 protein_coding protein_coding MGP_CASTEiJ_T0045542.1 MGP_CASTEiJ_G0022468.1 mouse_genomes_project 17 19583161 19583420 + MGP_CASTEiJ_P0045542 Gm10509 protein_coding protein_coding MGP_CASTEiJ_T0009937.1 MGP_CASTEiJ_G0008125.1 mouse_genomes_project 17 36010916 36010997 + Mir1894 miRNA miRNA MGP_CASTEiJ_T0012910.1 MGP_CASTEiJ_G0011073.1 mouse_genomes_project 17 91705323 91705457 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100777.1 MGP_CASTEiJ_G0037690.1 mouse_genomes_project 17 76730329 76730472 + Gm24475 snoRNA snoRNA MGP_CASTEiJ_T0009912.1 MGP_CASTEiJ_G0008100.1 mouse_genomes_project 17 25427259 25427385 - Gm22420 miRNA miRNA MGP_CASTEiJ_T0047090.1 MGP_CASTEiJ_G0022841.1 mouse_genomes_project 17 34959642 34961124 - MGP_CASTEiJ_P0047090 Ly6g5b protein_coding protein_coding MGP_CASTEiJ_T0047091.1 MGP_CASTEiJ_G0022841.1 mouse_genomes_project 17 34959676 34961124 - MGP_CASTEiJ_P0047091 Ly6g5b protein_coding protein_coding MGP_CASTEiJ_T0045385.1 MGP_CASTEiJ_G0022401.1 mouse_genomes_project 17 10650581 10684063 - MGP_CASTEiJ_P0045385 protein_coding protein_coding MGP_CASTEiJ_T0045386.1 MGP_CASTEiJ_G0022401.1 mouse_genomes_project 17 10650584 10683825 - MGP_CASTEiJ_P0045386 protein_coding protein_coding MGP_CASTEiJ_T0045387.1 MGP_CASTEiJ_G0022401.1 mouse_genomes_project 17 10658671 10684140 - MGP_CASTEiJ_P0045387 protein_coding protein_coding MGP_CASTEiJ_T0045388.1 MGP_CASTEiJ_G0022401.1 mouse_genomes_project 17 10670152 10672346 - protein_coding processed_transcript MGP_CASTEiJ_T0102179.1 MGP_CASTEiJ_G0038904.1 mouse_genomes_project 17 37687368 37688295 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045777.1 MGP_CASTEiJ_G0022542.1 mouse_genomes_project 17 23352217 23356534 + MGP_CASTEiJ_P0045777 Noxo1 protein_coding protein_coding MGP_CASTEiJ_T0045779.1 MGP_CASTEiJ_G0022542.1 mouse_genomes_project 17 23354027 23354360 + Noxo1 protein_coding processed_transcript MGP_CASTEiJ_T0045780.1 MGP_CASTEiJ_G0022542.1 mouse_genomes_project 17 23354180 23355407 + Noxo1 protein_coding processed_transcript MGP_CASTEiJ_T0045781.1 MGP_CASTEiJ_G0022542.1 mouse_genomes_project 17 23354237 23356530 + Noxo1 protein_coding retained_intron MGP_CASTEiJ_T0045782.1 MGP_CASTEiJ_G0022542.1 mouse_genomes_project 17 23354243 23356318 + Noxo1 protein_coding retained_intron MGP_CASTEiJ_T0045783.1 MGP_CASTEiJ_G0022542.1 mouse_genomes_project 17 23354316 23355171 + Noxo1 protein_coding retained_intron MGP_CASTEiJ_T0045784.1 MGP_CASTEiJ_G0022542.1 mouse_genomes_project 17 23354345 23355683 + Noxo1 protein_coding processed_transcript MGP_CASTEiJ_T0045785.1 MGP_CASTEiJ_G0022542.1 mouse_genomes_project 17 23354530 23356529 + Noxo1 protein_coding processed_transcript MGP_CASTEiJ_T0045786.1 MGP_CASTEiJ_G0022542.1 mouse_genomes_project 17 23355397 23356521 + Noxo1 protein_coding processed_transcript MGP_CASTEiJ_T0006762.1 MGP_CASTEiJ_G0005583.1 mouse_genomes_project 17 33967218 33980313 - Gm20513 lincRNA lincRNA MGP_CASTEiJ_T0012836.1 MGP_CASTEiJ_G0010999.1 mouse_genomes_project 17 12566514 12567238 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048463.1 MGP_CASTEiJ_G0023282.1 mouse_genomes_project 17 87568732 87868823 - MGP_CASTEiJ_P0048463 Thada protein_coding protein_coding MGP_CASTEiJ_T0006809.1 MGP_CASTEiJ_G0005617.1 mouse_genomes_project 17 89308036 89336794 - Gm29418 lincRNA lincRNA MGP_CASTEiJ_T0046851.1 MGP_CASTEiJ_G0022792.1 mouse_genomes_project 17 33907747 33915446 + MGP_CASTEiJ_P0046851 H2-Ob protein_coding protein_coding MGP_CASTEiJ_T0046852.1 MGP_CASTEiJ_G0022792.1 mouse_genomes_project 17 33907749 33911132 + H2-Ob protein_coding retained_intron MGP_CASTEiJ_T0046853.1 MGP_CASTEiJ_G0022792.1 mouse_genomes_project 17 33907775 33915337 + MGP_CASTEiJ_P0046853 H2-Ob protein_coding protein_coding MGP_CASTEiJ_T0046854.1 MGP_CASTEiJ_G0022792.1 mouse_genomes_project 17 33909648 33913999 + MGP_CASTEiJ_P0046854 H2-Ob protein_coding protein_coding MGP_CASTEiJ_T0011088.1 MGP_CASTEiJ_G0009276.1 mouse_genomes_project 17 10425148 10425400 + Gm23833 misc_RNA misc_RNA MGP_CASTEiJ_T0045791.1 MGP_CASTEiJ_G0022544.1 mouse_genomes_project 17 23377621 23379839 - MGP_CASTEiJ_P0045791 Rnf151 protein_coding protein_coding MGP_CASTEiJ_T0012878.1 MGP_CASTEiJ_G0011041.1 mouse_genomes_project 17 55177350 55178075 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009920.1 MGP_CASTEiJ_G0008108.1 mouse_genomes_project 17 26273661 26273720 + Mir7218 miRNA miRNA MGP_CASTEiJ_T0047885.1 MGP_CASTEiJ_G0023080.1 mouse_genomes_project 17 49774993 49787292 - MGP_CASTEiJ_P0047885 Apobec2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0102118.1 MGP_CASTEiJ_G0038843.1 mouse_genomes_project 17 17700114 17744008 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0048325.1 MGP_CASTEiJ_G0023231.1 mouse_genomes_project 17 77164796 77197510 + MGP_CASTEiJ_P0048325 Slc30a6 protein_coding protein_coding MGP_CASTEiJ_T0048326.1 MGP_CASTEiJ_G0023231.1 mouse_genomes_project 17 77164796 77197510 + MGP_CASTEiJ_P0048326 Slc30a6 protein_coding protein_coding MGP_CASTEiJ_T0047456.1 MGP_CASTEiJ_G0022945.1 mouse_genomes_project 17 38435569 38436599 - MGP_CASTEiJ_P0047456 Olfr131 protein_coding protein_coding MGP_CASTEiJ_T0047457.1 MGP_CASTEiJ_G0022945.1 mouse_genomes_project 17 38435569 38442035 - MGP_CASTEiJ_P0047457 Olfr131 protein_coding protein_coding MGP_CASTEiJ_T0100754.1 MGP_CASTEiJ_G0037667.1 mouse_genomes_project 17 10588322 10588450 + Snora20 snoRNA snoRNA MGP_CASTEiJ_T0048004.1 MGP_CASTEiJ_G0023127.1 mouse_genomes_project 17 58078209 58091345 - MGP_CASTEiJ_P0048004 Plin3 protein_coding protein_coding MGP_CASTEiJ_T0047170.1 MGP_CASTEiJ_G0022859.1 mouse_genomes_project 17 35559331 35574266 + MGP_CASTEiJ_P0047170 Cchcr1 protein_coding protein_coding MGP_CASTEiJ_T0047171.1 MGP_CASTEiJ_G0022859.1 mouse_genomes_project 17 35559347 35562740 + Cchcr1 protein_coding retained_intron MGP_CASTEiJ_T0047172.1 MGP_CASTEiJ_G0022859.1 mouse_genomes_project 17 35559407 35574285 + MGP_CASTEiJ_P0047172 Cchcr1 protein_coding protein_coding MGP_CASTEiJ_T0047173.1 MGP_CASTEiJ_G0022859.1 mouse_genomes_project 17 35559692 35574275 + MGP_CASTEiJ_P0047173 Cchcr1 protein_coding protein_coding MGP_CASTEiJ_T0047174.1 MGP_CASTEiJ_G0022859.1 mouse_genomes_project 17 35562112 35563371 + Cchcr1 protein_coding processed_transcript MGP_CASTEiJ_T0047175.1 MGP_CASTEiJ_G0022859.1 mouse_genomes_project 17 35567732 35568485 + Cchcr1 protein_coding retained_intron MGP_CASTEiJ_T0047176.1 MGP_CASTEiJ_G0022859.1 mouse_genomes_project 17 35572120 35572658 + Cchcr1 protein_coding retained_intron MGP_CASTEiJ_T0048559.1 MGP_CASTEiJ_G0023316.1 mouse_genomes_project 17 92377524 92409972 + MGP_CASTEiJ_P0048559 Ston1 protein_coding protein_coding MGP_CASTEiJ_T0048560.1 MGP_CASTEiJ_G0023316.1 mouse_genomes_project 17 92377536 92421725 + Ston1 protein_coding processed_transcript MGP_CASTEiJ_T0048561.1 MGP_CASTEiJ_G0023316.1 mouse_genomes_project 17 92399010 92422127 + MGP_CASTEiJ_P0048561 Ston1 protein_coding protein_coding MGP_CASTEiJ_T0048562.1 MGP_CASTEiJ_G0023316.1 mouse_genomes_project 17 92399010 92425057 + MGP_CASTEiJ_P0048562 Ston1 protein_coding protein_coding MGP_CASTEiJ_T0048563.1 MGP_CASTEiJ_G0023316.1 mouse_genomes_project 17 92399064 92441963 + MGP_CASTEiJ_P0048563 Ston1 protein_coding protein_coding MGP_CASTEiJ_T0048564.1 MGP_CASTEiJ_G0023316.1 mouse_genomes_project 17 92399288 92411722 + Ston1 protein_coding retained_intron MGP_CASTEiJ_T0048565.1 MGP_CASTEiJ_G0023316.1 mouse_genomes_project 17 92399819 92411820 + Ston1 protein_coding retained_intron MGP_CASTEiJ_T0047466.1 MGP_CASTEiJ_G0022951.1 mouse_genomes_project 17 38646720 38647660 - MGP_CASTEiJ_P0047466 Olfr137 protein_coding protein_coding MGP_CASTEiJ_T0045569.1 MGP_CASTEiJ_G0022481.1 mouse_genomes_project 17 21143706 21143877 + MGP_CASTEiJ_P0045569 Gm9805 protein_coding protein_coding MGP_CASTEiJ_T0048063.1 MGP_CASTEiJ_G0023141.1 mouse_genomes_project 17 58547942 58554430 + MGP_CASTEiJ_P0048063 Ndufa11 protein_coding protein_coding MGP_CASTEiJ_T0047360.1 MGP_CASTEiJ_G0022895.1 mouse_genomes_project 17 37116557 37123055 - MGP_CASTEiJ_P0047360 Trim15 protein_coding protein_coding MGP_CASTEiJ_T0047361.1 MGP_CASTEiJ_G0022895.1 mouse_genomes_project 17 37116559 37123078 - MGP_CASTEiJ_P0047361 Trim15 protein_coding protein_coding MGP_CASTEiJ_T0047362.1 MGP_CASTEiJ_G0022895.1 mouse_genomes_project 17 37117184 37122614 - MGP_CASTEiJ_P0047362 Trim15 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0100762.1 MGP_CASTEiJ_G0037675.1 mouse_genomes_project 17 34782322 34782385 - Gm25744 snoRNA snoRNA MGP_CASTEiJ_T0045576.1 MGP_CASTEiJ_G0022484.1 mouse_genomes_project 17 21674780 21698191 - MGP_CASTEiJ_P0045576 Zfp40 protein_coding protein_coding MGP_CASTEiJ_T0045577.1 MGP_CASTEiJ_G0022484.1 mouse_genomes_project 17 21674808 21698110 - Zfp40 protein_coding processed_transcript MGP_CASTEiJ_T0045578.1 MGP_CASTEiJ_G0022484.1 mouse_genomes_project 17 21678199 21698151 - Zfp40 protein_coding processed_transcript MGP_CASTEiJ_T0045579.1 MGP_CASTEiJ_G0022484.1 mouse_genomes_project 17 21696245 21698152 - MGP_CASTEiJ_P0045579 Zfp40 protein_coding protein_coding MGP_CASTEiJ_T0102160.1 MGP_CASTEiJ_G0038885.1 mouse_genomes_project 17 36339396 36339502 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0046142.1 MGP_CASTEiJ_G0022626.1 mouse_genomes_project 17 25250228 25277192 + MGP_CASTEiJ_P0046142 Neurl1b protein_coding protein_coding MGP_CASTEiJ_T0046143.1 MGP_CASTEiJ_G0022626.1 mouse_genomes_project 17 25250228 25277192 + MGP_CASTEiJ_P0046143 Neurl1b protein_coding protein_coding MGP_CASTEiJ_T0046144.1 MGP_CASTEiJ_G0022626.1 mouse_genomes_project 17 25250309 25281768 + MGP_CASTEiJ_P0046144 Neurl1b protein_coding protein_coding MGP_CASTEiJ_T0048136.1 MGP_CASTEiJ_G0023178.1 mouse_genomes_project 17 66491050 66553552 - MGP_CASTEiJ_P0048136 Pja2 protein_coding protein_coding MGP_CASTEiJ_T0048137.1 MGP_CASTEiJ_G0023178.1 mouse_genomes_project 17 66491051 66531181 - MGP_CASTEiJ_P0048137 Pja2 protein_coding protein_coding MGP_CASTEiJ_T0048138.1 MGP_CASTEiJ_G0023178.1 mouse_genomes_project 17 66491051 66531181 - MGP_CASTEiJ_P0048138 Pja2 protein_coding protein_coding MGP_CASTEiJ_T0048139.1 MGP_CASTEiJ_G0023178.1 mouse_genomes_project 17 66491065 66553501 - MGP_CASTEiJ_P0048139 Pja2 protein_coding protein_coding MGP_CASTEiJ_T0009908.1 MGP_CASTEiJ_G0008096.1 mouse_genomes_project 17 23933663 23933751 - Mir3547 miRNA miRNA MGP_CASTEiJ_T0048277.1 MGP_CASTEiJ_G0023210.1 mouse_genomes_project 17 73809591 73872369 - MGP_CASTEiJ_P0048277 Emilin2 protein_coding protein_coding MGP_CASTEiJ_T0046221.1 MGP_CASTEiJ_G0022648.1 mouse_genomes_project 17 26523947 26585140 - MGP_CASTEiJ_P0046221 Nudt3 protein_coding protein_coding MGP_CASTEiJ_T0046222.1 MGP_CASTEiJ_G0022648.1 mouse_genomes_project 17 26525147 26584639 - MGP_CASTEiJ_P0046222 Nudt3 protein_coding protein_coding MGP_CASTEiJ_T0046223.1 MGP_CASTEiJ_G0022648.1 mouse_genomes_project 17 26525279 26531282 - Nudt3 protein_coding retained_intron MGP_CASTEiJ_T0046224.1 MGP_CASTEiJ_G0022648.1 mouse_genomes_project 17 26525362 26584938 - MGP_CASTEiJ_P0046224 Nudt3 protein_coding protein_coding MGP_CASTEiJ_T0046225.1 MGP_CASTEiJ_G0022648.1 mouse_genomes_project 17 26525407 26584066 - Nudt3 protein_coding processed_transcript MGP_CASTEiJ_T0046226.1 MGP_CASTEiJ_G0022648.1 mouse_genomes_project 17 26525526 26567790 - Nudt3 protein_coding processed_transcript MGP_CASTEiJ_T0046227.1 MGP_CASTEiJ_G0022648.1 mouse_genomes_project 17 26529922 26584938 - MGP_CASTEiJ_P0046227 Nudt3 protein_coding protein_coding MGP_CASTEiJ_T0046228.1 MGP_CASTEiJ_G0022648.1 mouse_genomes_project 17 26529995 26584519 - MGP_CASTEiJ_P0046228 Nudt3 protein_coding protein_coding MGP_CASTEiJ_T0046229.1 MGP_CASTEiJ_G0022648.1 mouse_genomes_project 17 26546007 26584938 - Nudt3 protein_coding retained_intron MGP_CASTEiJ_T0102116.1 MGP_CASTEiJ_G0038841.1 mouse_genomes_project 17 17104946 17140634 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0000957.1 MGP_CASTEiJ_G0000893.1 mouse_genomes_project 17 73935250 73938672 - TEC TEC MGP_CASTEiJ_T0047476.1 MGP_CASTEiJ_G0022961.1 mouse_genomes_project 17 41024715 41050829 - MGP_CASTEiJ_P0047476 protein_coding protein_coding MGP_CASTEiJ_T0046878.1 MGP_CASTEiJ_G0022800.1 mouse_genomes_project 17 34212272 34219269 - MGP_CASTEiJ_P0046878 Btnl4 protein_coding protein_coding MGP_CASTEiJ_T0045776.1 MGP_CASTEiJ_G0022541.1 mouse_genomes_project 17 23348467 23352140 - MGP_CASTEiJ_P0045776 Gfer protein_coding protein_coding MGP_CASTEiJ_T0048321.1 MGP_CASTEiJ_G0023227.1 mouse_genomes_project 17 76751029 76783605 - MGP_CASTEiJ_P0048321 Srd5a2 protein_coding protein_coding MGP_CASTEiJ_T0047070.1 MGP_CASTEiJ_G0022836.1 mouse_genomes_project 17 34909165 34913401 + MGP_CASTEiJ_P0047070 Ly6g6c protein_coding protein_coding MGP_CASTEiJ_T0047071.1 MGP_CASTEiJ_G0022836.1 mouse_genomes_project 17 34911098 34913818 + MGP_CASTEiJ_P0047071 Ly6g6c protein_coding protein_coding MGP_CASTEiJ_T0047072.1 MGP_CASTEiJ_G0022836.1 mouse_genomes_project 17 34911163 34913310 + MGP_CASTEiJ_P0047072 Ly6g6c protein_coding protein_coding MGP_CASTEiJ_T0046740.1 MGP_CASTEiJ_G0022771.1 mouse_genomes_project 17 33520588 33523683 + MGP_CASTEiJ_P0046740 Zbtb22 protein_coding protein_coding MGP_CASTEiJ_T0046741.1 MGP_CASTEiJ_G0022771.1 mouse_genomes_project 17 33520855 33525865 + MGP_CASTEiJ_P0046741 Zbtb22 protein_coding protein_coding MGP_CASTEiJ_T0046163.1 MGP_CASTEiJ_G0022631.1 mouse_genomes_project 17 25642393 25653624 + MGP_CASTEiJ_P0046163 Bnip1 protein_coding protein_coding MGP_CASTEiJ_T0046164.1 MGP_CASTEiJ_G0022631.1 mouse_genomes_project 17 25642396 25647246 + Bnip1 protein_coding retained_intron MGP_CASTEiJ_T0046165.1 MGP_CASTEiJ_G0022631.1 mouse_genomes_project 17 25642405 25647247 + Bnip1 protein_coding retained_intron MGP_CASTEiJ_T0046166.1 MGP_CASTEiJ_G0022631.1 mouse_genomes_project 17 25642407 25653284 + MGP_CASTEiJ_P0046166 Bnip1 protein_coding protein_coding MGP_CASTEiJ_T0046167.1 MGP_CASTEiJ_G0022631.1 mouse_genomes_project 17 25642435 25653623 + MGP_CASTEiJ_P0046167 Bnip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046168.1 MGP_CASTEiJ_G0022631.1 mouse_genomes_project 17 25642449 25653180 + MGP_CASTEiJ_P0046168 Bnip1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046169.1 MGP_CASTEiJ_G0022631.1 mouse_genomes_project 17 25642472 25653528 + MGP_CASTEiJ_P0046169 Bnip1 protein_coding protein_coding MGP_CASTEiJ_T0046170.1 MGP_CASTEiJ_G0022631.1 mouse_genomes_project 17 25647503 25651119 + Bnip1 protein_coding retained_intron MGP_CASTEiJ_T0046171.1 MGP_CASTEiJ_G0022631.1 mouse_genomes_project 17 25651869 25653668 + Bnip1 protein_coding retained_intron MGP_CASTEiJ_T0046476.1 MGP_CASTEiJ_G0022703.1 mouse_genomes_project 17 30260688 30298073 + MGP_CASTEiJ_P0046476 Glp1r protein_coding protein_coding MGP_CASTEiJ_T0048499.1 MGP_CASTEiJ_G0023296.1 mouse_genomes_project 17 90069906 90077476 - MGP_CASTEiJ_P0048499 Gm10309 protein_coding protein_coding MGP_CASTEiJ_T0048006.1 MGP_CASTEiJ_G0023129.1 mouse_genomes_project 17 58103789 58127447 + MGP_CASTEiJ_P0048006 Uhrf1 protein_coding protein_coding MGP_CASTEiJ_T0048007.1 MGP_CASTEiJ_G0023129.1 mouse_genomes_project 17 58103868 58127456 + MGP_CASTEiJ_P0048007 Uhrf1 protein_coding protein_coding MGP_CASTEiJ_T0048008.1 MGP_CASTEiJ_G0023129.1 mouse_genomes_project 17 58104781 58127449 + MGP_CASTEiJ_P0048008 Uhrf1 protein_coding protein_coding MGP_CASTEiJ_T0048009.1 MGP_CASTEiJ_G0023129.1 mouse_genomes_project 17 58104816 58127454 + MGP_CASTEiJ_P0048009 Uhrf1 protein_coding protein_coding MGP_CASTEiJ_T0048010.1 MGP_CASTEiJ_G0023129.1 mouse_genomes_project 17 58104875 58114248 + MGP_CASTEiJ_P0048010 Uhrf1 protein_coding protein_coding MGP_CASTEiJ_T0048011.1 MGP_CASTEiJ_G0023129.1 mouse_genomes_project 17 58122680 58127265 + Uhrf1 protein_coding retained_intron MGP_CASTEiJ_T0003637.1 MGP_CASTEiJ_G0003282.1 mouse_genomes_project 17 35944507 35950350 - Ppp1r18os antisense antisense MGP_CASTEiJ_T0047609.1 MGP_CASTEiJ_G0023007.1 mouse_genomes_project 17 47099579 47116215 - MGP_CASTEiJ_P0047609 Vegfa protein_coding protein_coding MGP_CASTEiJ_T0047610.1 MGP_CASTEiJ_G0023007.1 mouse_genomes_project 17 47099579 47115662 - MGP_CASTEiJ_P0047610 Vegfa protein_coding protein_coding MGP_CASTEiJ_T0047611.1 MGP_CASTEiJ_G0023007.1 mouse_genomes_project 17 47099582 47116223 - MGP_CASTEiJ_P0047611 Vegfa protein_coding protein_coding MGP_CASTEiJ_T0047612.1 MGP_CASTEiJ_G0023007.1 mouse_genomes_project 17 47101018 47108705 - Vegfa protein_coding retained_intron MGP_CASTEiJ_T0047613.1 MGP_CASTEiJ_G0023007.1 mouse_genomes_project 17 47102364 47116215 - MGP_CASTEiJ_P0047613 Vegfa protein_coding protein_coding MGP_CASTEiJ_T0047614.1 MGP_CASTEiJ_G0023007.1 mouse_genomes_project 17 47102427 47108722 - Vegfa protein_coding retained_intron MGP_CASTEiJ_T0047615.1 MGP_CASTEiJ_G0023007.1 mouse_genomes_project 17 47102533 47105198 - Vegfa protein_coding retained_intron MGP_CASTEiJ_T0047616.1 MGP_CASTEiJ_G0023007.1 mouse_genomes_project 17 47102652 47115203 - MGP_CASTEiJ_P0047616 Vegfa protein_coding protein_coding MGP_CASTEiJ_T0047617.1 MGP_CASTEiJ_G0023007.1 mouse_genomes_project 17 47102654 47108643 - Vegfa protein_coding retained_intron MGP_CASTEiJ_T0047618.1 MGP_CASTEiJ_G0023007.1 mouse_genomes_project 17 47102679 47115203 - MGP_CASTEiJ_P0047618 Vegfa protein_coding protein_coding MGP_CASTEiJ_T0047619.1 MGP_CASTEiJ_G0023007.1 mouse_genomes_project 17 47109036 47115203 - Vegfa protein_coding retained_intron MGP_CASTEiJ_T0045512.1 MGP_CASTEiJ_G0022447.1 mouse_genomes_project 17 18299734 18334277 + MGP_CASTEiJ_P0045512 Vmn2r107 protein_coding protein_coding MGP_CASTEiJ_T0045660.1 MGP_CASTEiJ_G0022514.1 mouse_genomes_project 17 22632013 22661384 - MGP_CASTEiJ_P0045660 Kctd5 protein_coding protein_coding MGP_CASTEiJ_T0045661.1 MGP_CASTEiJ_G0022514.1 mouse_genomes_project 17 22643901 22656191 - Kctd5 protein_coding processed_transcript MGP_CASTEiJ_T0045477.1 MGP_CASTEiJ_G0022427.1 mouse_genomes_project 17 15439226 15477364 + MGP_CASTEiJ_P0045477 Vmn2r90 protein_coding protein_coding MGP_CASTEiJ_T0047177.1 MGP_CASTEiJ_G0022860.1 mouse_genomes_project 17 35579944 35581390 + MGP_CASTEiJ_P0047177 Psors1c2 protein_coding protein_coding MGP_CASTEiJ_T0099537.1 MGP_CASTEiJ_G0036450.1 mouse_genomes_project 17 49074377 49074547 - Gm25201 snRNA snRNA MGP_CASTEiJ_T0048503.1 MGP_CASTEiJ_G0023299.1 mouse_genomes_project 17 90554380 90558041 - MGP_CASTEiJ_P0048503 Atp6v1e2 protein_coding protein_coding MGP_CASTEiJ_T0045807.1 MGP_CASTEiJ_G0022550.1 mouse_genomes_project 17 23474880 23508884 + MGP_CASTEiJ_P0045807 Meiob protein_coding protein_coding MGP_CASTEiJ_T0048150.1 MGP_CASTEiJ_G0023184.1 mouse_genomes_project 17 67905172 68033632 - MGP_CASTEiJ_P0048150 Rab31 protein_coding protein_coding MGP_CASTEiJ_T0003649.1 MGP_CASTEiJ_G0003291.1 mouse_genomes_project 17 48896635 48900101 + Tomm6os antisense antisense MGP_CASTEiJ_T0012869.1 MGP_CASTEiJ_G0011032.1 mouse_genomes_project 17 38280629 38281001 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0045979.1 MGP_CASTEiJ_G0022591.1 mouse_genomes_project 17 24514828 24527837 + MGP_CASTEiJ_P0045979 Narfl protein_coding protein_coding MGP_CASTEiJ_T0045980.1 MGP_CASTEiJ_G0022591.1 mouse_genomes_project 17 24514828 24527296 + MGP_CASTEiJ_P0045980 Narfl protein_coding protein_coding MGP_CASTEiJ_T0045981.1 MGP_CASTEiJ_G0022591.1 mouse_genomes_project 17 24514859 24519847 + Narfl protein_coding retained_intron MGP_CASTEiJ_T0045982.1 MGP_CASTEiJ_G0022591.1 mouse_genomes_project 17 24514869 24524018 + MGP_CASTEiJ_P0045982 Narfl protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045983.1 MGP_CASTEiJ_G0022591.1 mouse_genomes_project 17 24514871 24527301 + Narfl protein_coding retained_intron MGP_CASTEiJ_T0045984.1 MGP_CASTEiJ_G0022591.1 mouse_genomes_project 17 24521286 24524098 + Narfl protein_coding retained_intron MGP_CASTEiJ_T0048598.1 MGP_CASTEiJ_G0023322.1 mouse_genomes_project 17 97158123 97164220 + MGP_CASTEiJ_P0048598 Adcyap1 protein_coding protein_coding MGP_CASTEiJ_T0100782.1 MGP_CASTEiJ_G0037695.1 mouse_genomes_project 17 95728444 95728574 - Gm24244 snoRNA snoRNA MGP_CASTEiJ_T0047045.1 MGP_CASTEiJ_G0022830.1 mouse_genomes_project 17 34858918 34869095 + MGP_CASTEiJ_P0047045 Vwa7 protein_coding protein_coding MGP_CASTEiJ_T0047046.1 MGP_CASTEiJ_G0022830.1 mouse_genomes_project 17 34858977 34868869 + MGP_CASTEiJ_P0047046 Vwa7 protein_coding protein_coding MGP_CASTEiJ_T0047883.1 MGP_CASTEiJ_G0023079.1 mouse_genomes_project 17 49764708 49771773 + MGP_CASTEiJ_P0047883 Oard1 protein_coding protein_coding MGP_CASTEiJ_T0047884.1 MGP_CASTEiJ_G0023079.1 mouse_genomes_project 17 49764774 49771785 + MGP_CASTEiJ_P0047884 Oard1 protein_coding protein_coding MGP_CASTEiJ_T0045252.1 MGP_CASTEiJ_G0022360.1 mouse_genomes_project 17 3237745 3277326 - MGP_CASTEiJ_P0045252 Serac1 protein_coding protein_coding MGP_CASTEiJ_T0045253.1 MGP_CASTEiJ_G0022360.1 mouse_genomes_project 17 3239454 3245631 - Serac1 protein_coding processed_transcript MGP_CASTEiJ_T0045254.1 MGP_CASTEiJ_G0022360.1 mouse_genomes_project 17 3239616 3277312 - MGP_CASTEiJ_P0045254 Serac1 protein_coding protein_coding MGP_CASTEiJ_T0045255.1 MGP_CASTEiJ_G0022360.1 mouse_genomes_project 17 3245602 3246964 - Serac1 protein_coding retained_intron MGP_CASTEiJ_T0045256.1 MGP_CASTEiJ_G0022360.1 mouse_genomes_project 17 3262436 3277318 - Serac1 protein_coding processed_transcript MGP_CASTEiJ_T0099541.1 MGP_CASTEiJ_G0036454.1 mouse_genomes_project 17 59601193 59601305 + Gm25102 snRNA snRNA MGP_CASTEiJ_T0047852.1 MGP_CASTEiJ_G0023071.1 mouse_genomes_project 17 49570081 49583770 + MGP_CASTEiJ_P0047852 Trem1 protein_coding protein_coding MGP_CASTEiJ_T0047853.1 MGP_CASTEiJ_G0023071.1 mouse_genomes_project 17 49570084 49584353 + MGP_CASTEiJ_P0047853 Trem1 protein_coding protein_coding MGP_CASTEiJ_T0047708.1 MGP_CASTEiJ_G0023028.1 mouse_genomes_project 17 47655299 47728197 - MGP_CASTEiJ_P0047708 Ptk7 protein_coding protein_coding MGP_CASTEiJ_T0012907.1 MGP_CASTEiJ_G0011070.1 mouse_genomes_project 17 88439845 88461837 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0046321.1 MGP_CASTEiJ_G0022666.1 mouse_genomes_project 17 27446548 27541387 - MGP_CASTEiJ_P0046321 Fkbp5 protein_coding protein_coding MGP_CASTEiJ_T0046322.1 MGP_CASTEiJ_G0022666.1 mouse_genomes_project 17 27446550 27574719 - MGP_CASTEiJ_P0046322 Fkbp5 protein_coding protein_coding MGP_CASTEiJ_T0046323.1 MGP_CASTEiJ_G0022666.1 mouse_genomes_project 17 27446558 27574719 - MGP_CASTEiJ_P0046323 Fkbp5 protein_coding protein_coding MGP_CASTEiJ_T0046324.1 MGP_CASTEiJ_G0022666.1 mouse_genomes_project 17 27452917 27483109 - Fkbp5 protein_coding processed_transcript MGP_CASTEiJ_T0046325.1 MGP_CASTEiJ_G0022666.1 mouse_genomes_project 17 27468877 27496235 - MGP_CASTEiJ_P0046325 Fkbp5 protein_coding protein_coding MGP_CASTEiJ_T0046326.1 MGP_CASTEiJ_G0022666.1 mouse_genomes_project 17 27552418 27562550 - Fkbp5 protein_coding retained_intron MGP_CASTEiJ_T0048546.1 MGP_CASTEiJ_G0023313.1 mouse_genomes_project 17 91704128 91783051 - MGP_CASTEiJ_P0048546 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048547.1 MGP_CASTEiJ_G0023313.1 mouse_genomes_project 17 91704694 91722530 - MGP_CASTEiJ_P0048547 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048548.1 MGP_CASTEiJ_G0023313.1 mouse_genomes_project 17 91706486 91715250 - protein_coding retained_intron MGP_CASTEiJ_T0048065.1 MGP_CASTEiJ_G0023143.1 mouse_genomes_project 17 58595990 58602732 + MGP_CASTEiJ_P0048065 Dus3l protein_coding protein_coding MGP_CASTEiJ_T0045650.1 MGP_CASTEiJ_G0022508.1 mouse_genomes_project 17 22413341 22418405 + MGP_CASTEiJ_P0045650 Prss21 protein_coding protein_coding MGP_CASTEiJ_T0047449.1 MGP_CASTEiJ_G0022939.1 mouse_genomes_project 17 38165629 38177673 + MGP_CASTEiJ_P0047449 protein_coding protein_coding MGP_CASTEiJ_T0045524.1 MGP_CASTEiJ_G0022459.1 mouse_genomes_project 17 18958142 18978879 + MGP_CASTEiJ_P0045524 Ppp2r1a protein_coding protein_coding MGP_CASTEiJ_T0045525.1 MGP_CASTEiJ_G0022459.1 mouse_genomes_project 17 18958318 18971535 + MGP_CASTEiJ_P0045525 Ppp2r1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045526.1 MGP_CASTEiJ_G0022459.1 mouse_genomes_project 17 18969327 18971588 + Ppp2r1a protein_coding retained_intron MGP_CASTEiJ_T0045527.1 MGP_CASTEiJ_G0022459.1 mouse_genomes_project 17 18969528 18972260 + MGP_CASTEiJ_P0045527 Ppp2r1a protein_coding protein_coding MGP_CASTEiJ_T0045528.1 MGP_CASTEiJ_G0022459.1 mouse_genomes_project 17 18971491 18973349 + Ppp2r1a protein_coding retained_intron MGP_CASTEiJ_T0045529.1 MGP_CASTEiJ_G0022459.1 mouse_genomes_project 17 18971739 18974693 + Ppp2r1a protein_coding retained_intron MGP_CASTEiJ_T0045530.1 MGP_CASTEiJ_G0022459.1 mouse_genomes_project 17 18973240 18974018 + Ppp2r1a protein_coding retained_intron MGP_CASTEiJ_T0102158.1 MGP_CASTEiJ_G0038883.1 mouse_genomes_project 17 36306697 36306928 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0012857.1 MGP_CASTEiJ_G0011020.1 mouse_genomes_project 17 36350611 36350924 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0047630.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47253703 47267306 + MGP_CASTEiJ_P0047630 Gtpbp2 protein_coding protein_coding MGP_CASTEiJ_T0047631.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47253703 47267304 + MGP_CASTEiJ_P0047631 Gtpbp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047632.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47253720 47261438 + Gtpbp2 protein_coding processed_transcript MGP_CASTEiJ_T0047633.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47253737 47267272 + MGP_CASTEiJ_P0047633 Gtpbp2 protein_coding protein_coding MGP_CASTEiJ_T0047634.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47259045 47262241 + MGP_CASTEiJ_P0047634 Gtpbp2 protein_coding protein_coding MGP_CASTEiJ_T0047635.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47259095 47260091 + Gtpbp2 protein_coding processed_transcript MGP_CASTEiJ_T0047636.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47259229 47262684 + Gtpbp2 protein_coding processed_transcript MGP_CASTEiJ_T0047637.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47260965 47262755 + Gtpbp2 protein_coding retained_intron MGP_CASTEiJ_T0047638.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47261158 47263727 + Gtpbp2 protein_coding processed_transcript MGP_CASTEiJ_T0047639.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47261250 47263122 + Gtpbp2 protein_coding retained_intron MGP_CASTEiJ_T0047640.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47263627 47265814 + Gtpbp2 protein_coding retained_intron MGP_CASTEiJ_T0047641.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47263709 47265264 + Gtpbp2 protein_coding retained_intron MGP_CASTEiJ_T0047642.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47264362 47266166 + MGP_CASTEiJ_P0047642 Gtpbp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047643.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47264798 47265953 + Gtpbp2 protein_coding retained_intron MGP_CASTEiJ_T0047644.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47264919 47266143 + Gtpbp2 protein_coding retained_intron MGP_CASTEiJ_T0047645.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47265162 47266326 + MGP_CASTEiJ_P0047645 Gtpbp2 protein_coding protein_coding MGP_CASTEiJ_T0047646.1 MGP_CASTEiJ_G0023011.1 mouse_genomes_project 17 47265567 47266342 + Gtpbp2 protein_coding retained_intron MGP_CASTEiJ_T0009950.1 MGP_CASTEiJ_G0008138.1 mouse_genomes_project 17 81306658 81306732 + Gm25069 miRNA miRNA MGP_CASTEiJ_T0102146.1 MGP_CASTEiJ_G0038871.1 mouse_genomes_project 17 34223614 34223970 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0006763.1 MGP_CASTEiJ_G0005584.1 mouse_genomes_project 17 34424661 34427799 - Gm20461 lincRNA lincRNA MGP_CASTEiJ_T0011477.1 MGP_CASTEiJ_G0009657.1 mouse_genomes_project 17 22067254 22069807 - MGP_CASTEiJ_P0011477 Casp16-ps polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0011478.1 MGP_CASTEiJ_G0009657.1 mouse_genomes_project 17 22067358 22069729 - MGP_CASTEiJ_P0011478 Casp16-ps polymorphic_pseudogene protein_coding MGP_CASTEiJ_T0045506.1 MGP_CASTEiJ_G0022441.1 mouse_genomes_project 17 17370733 17405263 + MGP_CASTEiJ_P0045506 Vmn2r100 protein_coding protein_coding MGP_CASTEiJ_T0045495.1 MGP_CASTEiJ_G0022432.1 mouse_genomes_project 17 15650080 15745091 + MGP_CASTEiJ_P0045495 protein_coding protein_coding MGP_CASTEiJ_T0045498.1 MGP_CASTEiJ_G0022432.1 mouse_genomes_project 17 15743872 15745091 + MGP_CASTEiJ_P0045498 protein_coding protein_coding MGP_CASTEiJ_T0047956.1 MGP_CASTEiJ_G0023102.1 mouse_genomes_project 17 57224648 57263703 + MGP_CASTEiJ_P0047956 St6gal2 protein_coding protein_coding MGP_CASTEiJ_T0047957.1 MGP_CASTEiJ_G0023102.1 mouse_genomes_project 17 57224655 57280699 + MGP_CASTEiJ_P0047957 St6gal2 protein_coding protein_coding MGP_CASTEiJ_T0047958.1 MGP_CASTEiJ_G0023102.1 mouse_genomes_project 17 57224816 57300330 + MGP_CASTEiJ_P0047958 St6gal2 protein_coding protein_coding MGP_CASTEiJ_T0047959.1 MGP_CASTEiJ_G0023102.1 mouse_genomes_project 17 57225510 57263039 + St6gal2 protein_coding processed_transcript MGP_CASTEiJ_T0047665.1 MGP_CASTEiJ_G0023017.1 mouse_genomes_project 17 47357934 47383186 - MGP_CASTEiJ_P0047665 Tjap1 protein_coding protein_coding MGP_CASTEiJ_T0047666.1 MGP_CASTEiJ_G0023017.1 mouse_genomes_project 17 47357934 47383186 - MGP_CASTEiJ_P0047666 Tjap1 protein_coding protein_coding MGP_CASTEiJ_T0047667.1 MGP_CASTEiJ_G0023017.1 mouse_genomes_project 17 47357934 47383186 - MGP_CASTEiJ_P0047667 Tjap1 protein_coding protein_coding MGP_CASTEiJ_T0047668.1 MGP_CASTEiJ_G0023017.1 mouse_genomes_project 17 47360808 47365231 - MGP_CASTEiJ_P0047668 Tjap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003585.1 MGP_CASTEiJ_G0003248.1 mouse_genomes_project 17 5144537 5147404 - antisense antisense MGP_CASTEiJ_T0006804.1 MGP_CASTEiJ_G0005612.1 mouse_genomes_project 17 81927257 81940958 + Gm26637 lincRNA lincRNA MGP_CASTEiJ_T0047740.1 MGP_CASTEiJ_G0023042.1 mouse_genomes_project 17 47923337 47965702 - MGP_CASTEiJ_P0047740 Gltscr1l protein_coding protein_coding MGP_CASTEiJ_T0047741.1 MGP_CASTEiJ_G0023042.1 mouse_genomes_project 17 47923337 47966159 - MGP_CASTEiJ_P0047741 Gltscr1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0045558.1 MGP_CASTEiJ_G0022478.1 mouse_genomes_project 17 20199038 20234912 + MGP_CASTEiJ_P0045558 Zfp943 protein_coding protein_coding MGP_CASTEiJ_T0045559.1 MGP_CASTEiJ_G0022478.1 mouse_genomes_project 17 20199045 20232590 + MGP_CASTEiJ_P0045559 Zfp943 protein_coding protein_coding MGP_CASTEiJ_T0045560.1 MGP_CASTEiJ_G0022478.1 mouse_genomes_project 17 20199072 20332993 + MGP_CASTEiJ_P0045560 Zfp943 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0102174.1 MGP_CASTEiJ_G0038899.1 mouse_genomes_project 17 37550387 37551842 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0006726.1 MGP_CASTEiJ_G0005555.1 mouse_genomes_project 17 19656622 19664294 - 9330136K24Rik lincRNA lincRNA MGP_CASTEiJ_T0047347.1 MGP_CASTEiJ_G0022892.1 mouse_genomes_project 17 36815259 36818640 - MGP_CASTEiJ_P0047347 H2-M9 protein_coding protein_coding MGP_CASTEiJ_T0047348.1 MGP_CASTEiJ_G0022892.1 mouse_genomes_project 17 36816380 36818640 - MGP_CASTEiJ_P0047348 H2-M9 protein_coding protein_coding MGP_CASTEiJ_T0045625.1 MGP_CASTEiJ_G0022502.1 mouse_genomes_project 17 22313990 22322947 - MGP_CASTEiJ_P0045625 Flywch2 protein_coding protein_coding MGP_CASTEiJ_T0045626.1 MGP_CASTEiJ_G0022502.1 mouse_genomes_project 17 22314033 22316866 - MGP_CASTEiJ_P0045626 Flywch2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045627.1 MGP_CASTEiJ_G0022502.1 mouse_genomes_project 17 22314066 22322918 - MGP_CASTEiJ_P0045627 Flywch2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047511.1 MGP_CASTEiJ_G0022982.1 mouse_genomes_project 17 44385978 44395238 - MGP_CASTEiJ_P0047511 Ankrd66 protein_coding protein_coding MGP_CASTEiJ_T0047160.1 MGP_CASTEiJ_G0022857.1 mouse_genomes_project 17 35546624 35553035 + MGP_CASTEiJ_P0047160 Pou5f1 protein_coding protein_coding MGP_CASTEiJ_T0047161.1 MGP_CASTEiJ_G0022857.1 mouse_genomes_project 17 35548088 35552416 + MGP_CASTEiJ_P0047161 Pou5f1 protein_coding protein_coding MGP_CASTEiJ_T0047162.1 MGP_CASTEiJ_G0022857.1 mouse_genomes_project 17 35551090 35552416 + MGP_CASTEiJ_P0047162 Pou5f1 protein_coding protein_coding MGP_CASTEiJ_T0047163.1 MGP_CASTEiJ_G0022857.1 mouse_genomes_project 17 35551092 35552416 + MGP_CASTEiJ_P0047163 Pou5f1 protein_coding protein_coding MGP_CASTEiJ_T0047164.1 MGP_CASTEiJ_G0022857.1 mouse_genomes_project 17 35551102 35552416 + MGP_CASTEiJ_P0047164 Pou5f1 protein_coding protein_coding MGP_CASTEiJ_T0047165.1 MGP_CASTEiJ_G0022857.1 mouse_genomes_project 17 35551106 35552416 + MGP_CASTEiJ_P0047165 Pou5f1 protein_coding protein_coding MGP_CASTEiJ_T0000953.1 MGP_CASTEiJ_G0000889.1 mouse_genomes_project 17 53468857 53472106 + TEC TEC MGP_CASTEiJ_T0047692.1 MGP_CASTEiJ_G0023022.1 mouse_genomes_project 17 47512867 47519088 - MGP_CASTEiJ_P0047692 Slc22a7 protein_coding protein_coding MGP_CASTEiJ_T0047787.1 MGP_CASTEiJ_G0023056.1 mouse_genomes_project 17 48819869 48833594 + MGP_CASTEiJ_P0047787 Med20 protein_coding protein_coding MGP_CASTEiJ_T0047788.1 MGP_CASTEiJ_G0023056.1 mouse_genomes_project 17 48819872 48827776 + Med20 protein_coding retained_intron MGP_CASTEiJ_T0047791.1 MGP_CASTEiJ_G0023056.1 mouse_genomes_project 17 48819895 48833424 + Med20 protein_coding retained_intron MGP_CASTEiJ_T0047793.1 MGP_CASTEiJ_G0023056.1 mouse_genomes_project 17 48819908 48821585 + Med20 protein_coding retained_intron MGP_CASTEiJ_T0102139.1 MGP_CASTEiJ_G0038864.1 mouse_genomes_project 17 33485143 33488088 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045621.1 MGP_CASTEiJ_G0022500.1 mouse_genomes_project 17 22274128 22281055 - MGP_CASTEiJ_P0045621 Kremen2 protein_coding protein_coding MGP_CASTEiJ_T0047846.1 MGP_CASTEiJ_G0023067.1 mouse_genomes_project 17 49303899 49305480 - MGP_CASTEiJ_P0047846 1700122O11Rik protein_coding protein_coding MGP_CASTEiJ_T0046327.1 MGP_CASTEiJ_G0022667.1 mouse_genomes_project 17 27590292 27598607 + MGP_CASTEiJ_P0046327 Armc12 protein_coding protein_coding MGP_CASTEiJ_T0046328.1 MGP_CASTEiJ_G0022667.1 mouse_genomes_project 17 27593177 27598613 + MGP_CASTEiJ_P0046328 Armc12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0045500.1 MGP_CASTEiJ_G0022435.1 mouse_genomes_project 17 15854895 16889288 + MGP_CASTEiJ_P0045500 protein_coding protein_coding MGP_CASTEiJ_T0047555.1 MGP_CASTEiJ_G0022996.1 mouse_genomes_project 17 46544607 46564699 + MGP_CASTEiJ_P0047555 Tcte1 protein_coding protein_coding MGP_CASTEiJ_T0016791.1 MGP_CASTEiJ_G0014647.1 mouse_genomes_project 17 5725611 5744008 - 4930506C21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016792.1 MGP_CASTEiJ_G0014647.1 mouse_genomes_project 17 5729267 5730880 - 4930506C21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016793.1 MGP_CASTEiJ_G0014647.1 mouse_genomes_project 17 5730138 5744036 - 4930506C21Rik processed_transcript retained_intron MGP_CASTEiJ_T0003586.1 MGP_CASTEiJ_G0003249.1 mouse_genomes_project 17 8009433 8031151 + A230009B12Rik antisense antisense MGP_CASTEiJ_T0003587.1 MGP_CASTEiJ_G0003249.1 mouse_genomes_project 17 8009439 8030787 + A230009B12Rik antisense antisense MGP_CASTEiJ_T0003588.1 MGP_CASTEiJ_G0003249.1 mouse_genomes_project 17 8009513 8050396 + A230009B12Rik antisense antisense MGP_CASTEiJ_T0003589.1 MGP_CASTEiJ_G0003249.1 mouse_genomes_project 17 8021629 8030786 + A230009B12Rik antisense antisense MGP_CASTEiJ_T0012832.1 MGP_CASTEiJ_G0010995.1 mouse_genomes_project 17 9802994 9803530 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048566.1 MGP_CASTEiJ_G0023317.1 mouse_genomes_project 17 92448631 92498715 + MGP_CASTEiJ_P0048566 Gtf2a1l protein_coding protein_coding MGP_CASTEiJ_T0048567.1 MGP_CASTEiJ_G0023317.1 mouse_genomes_project 17 92448667 92475671 + MGP_CASTEiJ_P0048567 Gtf2a1l protein_coding protein_coding MGP_CASTEiJ_T0046646.1 MGP_CASTEiJ_G0022751.1 mouse_genomes_project 17 32831270 32832361 - MGP_CASTEiJ_P0046646 Gm4461 protein_coding protein_coding MGP_CASTEiJ_T0009955.1 MGP_CASTEiJ_G0008143.1 mouse_genomes_project 17 95772712 95772847 + Gm44345 miRNA miRNA MGP_CASTEiJ_T0045934.1 MGP_CASTEiJ_G0022579.1 mouse_genomes_project 17 24079914 24081462 + MGP_CASTEiJ_P0045934 Tpsb2 protein_coding protein_coding MGP_CASTEiJ_T0006784.1 MGP_CASTEiJ_G0005599.1 mouse_genomes_project 17 51729730 51736817 + AY702103 lincRNA lincRNA MGP_CASTEiJ_T0006785.1 MGP_CASTEiJ_G0005599.1 mouse_genomes_project 17 51729927 51732061 + AY702103 lincRNA lincRNA MGP_CASTEiJ_T0046437.1 MGP_CASTEiJ_G0022694.1 mouse_genomes_project 17 28770783 28800499 + MGP_CASTEiJ_P0046437 Rnf8 protein_coding protein_coding MGP_CASTEiJ_T0046438.1 MGP_CASTEiJ_G0022694.1 mouse_genomes_project 17 28770815 28784471 + MGP_CASTEiJ_P0046438 Rnf8 protein_coding protein_coding MGP_CASTEiJ_T0046439.1 MGP_CASTEiJ_G0022694.1 mouse_genomes_project 17 28770847 28800422 + MGP_CASTEiJ_P0046439 Rnf8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0046441.1 MGP_CASTEiJ_G0022694.1 mouse_genomes_project 17 28770883 28775599 + Rnf8 protein_coding processed_transcript MGP_CASTEiJ_T0046442.1 MGP_CASTEiJ_G0022694.1 mouse_genomes_project 17 28772130 28784504 + MGP_CASTEiJ_P0046442 Rnf8 protein_coding protein_coding MGP_CASTEiJ_T0046443.1 MGP_CASTEiJ_G0022694.1 mouse_genomes_project 17 28787398 28794710 + Rnf8 protein_coding retained_intron MGP_CASTEiJ_T0046444.1 MGP_CASTEiJ_G0022694.1 mouse_genomes_project 17 28790313 28800370 + Rnf8 protein_coding retained_intron MGP_CASTEiJ_T0046445.1 MGP_CASTEiJ_G0022694.1 mouse_genomes_project 17 28793267 28800391 + Rnf8 protein_coding retained_intron MGP_CASTEiJ_T0102115.1 MGP_CASTEiJ_G0038840.1 mouse_genomes_project 17 16796981 16798294 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0046622.1 MGP_CASTEiJ_G0022741.1 mouse_genomes_project 17 32519830 32531658 - MGP_CASTEiJ_P0046622 Cyp4f14 protein_coding protein_coding MGP_CASTEiJ_T0046623.1 MGP_CASTEiJ_G0022741.1 mouse_genomes_project 17 32519830 32531913 - MGP_CASTEiJ_P0046623 Cyp4f14 protein_coding protein_coding MGP_CASTEiJ_T0100781.1 MGP_CASTEiJ_G0037694.1 mouse_genomes_project 17 91104446 91104580 - Gm26005 snoRNA snoRNA MGP_CASTEiJ_T0047453.1 MGP_CASTEiJ_G0022943.1 mouse_genomes_project 17 38403157 38404474 - MGP_CASTEiJ_P0047453 protein_coding protein_coding MGP_CASTEiJ_T0047680.1 MGP_CASTEiJ_G0023020.1 mouse_genomes_project 17 47463737 47494903 + MGP_CASTEiJ_P0047680 Zfp318 protein_coding protein_coding MGP_CASTEiJ_T0047681.1 MGP_CASTEiJ_G0023020.1 mouse_genomes_project 17 47463757 47501019 + MGP_CASTEiJ_P0047681 Zfp318 protein_coding protein_coding MGP_CASTEiJ_T0047682.1 MGP_CASTEiJ_G0023020.1 mouse_genomes_project 17 47480025 47490746 + MGP_CASTEiJ_P0047682 Zfp318 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0047683.1 MGP_CASTEiJ_G0023020.1 mouse_genomes_project 17 47485827 47489389 + Zfp318 protein_coding retained_intron MGP_CASTEiJ_T0047684.1 MGP_CASTEiJ_G0023020.1 mouse_genomes_project 17 47489656 47491349 + Zfp318 protein_coding retained_intron MGP_CASTEiJ_T0046155.1 MGP_CASTEiJ_G0022629.1 mouse_genomes_project 17 25528865 25553414 + MGP_CASTEiJ_P0046155 Atp6v0e protein_coding protein_coding MGP_CASTEiJ_T0046156.1 MGP_CASTEiJ_G0022629.1 mouse_genomes_project 17 25528881 25551717 + MGP_CASTEiJ_P0046156 Atp6v0e protein_coding protein_coding MGP_CASTEiJ_T0099535.1 MGP_CASTEiJ_G0036448.1 mouse_genomes_project 17 46658385 46658466 + Gm25008 snRNA snRNA MGP_CASTEiJ_T0011089.1 MGP_CASTEiJ_G0009277.1 mouse_genomes_project 17 15535144 15535430 + Gm23837 misc_RNA misc_RNA MGP_CASTEiJ_T0012879.1 MGP_CASTEiJ_G0011042.1 mouse_genomes_project 17 55286977 55287460 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100769.1 MGP_CASTEiJ_G0037682.1 mouse_genomes_project 17 61114969 61115090 - Gm23769 snoRNA snoRNA MGP_CASTEiJ_T0047364.1 MGP_CASTEiJ_G0022897.1 mouse_genomes_project 17 37137452 37145938 - MGP_CASTEiJ_P0047364 Trim40 protein_coding protein_coding MGP_CASTEiJ_T0047365.1 MGP_CASTEiJ_G0022897.1 mouse_genomes_project 17 37137699 37145378 - MGP_CASTEiJ_P0047365 Trim40 protein_coding protein_coding MGP_CASTEiJ_T0047366.1 MGP_CASTEiJ_G0022897.1 mouse_genomes_project 17 37138798 37146016 - Trim40 protein_coding retained_intron MGP_CASTEiJ_T0047367.1 MGP_CASTEiJ_G0022897.1 mouse_genomes_project 17 37145109 37146005 - Trim40 protein_coding processed_transcript MGP_CASTEiJ_T0011098.1 MGP_CASTEiJ_G0009286.1 mouse_genomes_project 17 47483849 47484173 + Gm23037 misc_RNA misc_RNA MGP_CASTEiJ_T0047669.1 MGP_CASTEiJ_G0023018.1 mouse_genomes_project 17 47398953 47403806 + MGP_CASTEiJ_P0047669 Dlk2 protein_coding protein_coding MGP_CASTEiJ_T0047670.1 MGP_CASTEiJ_G0023018.1 mouse_genomes_project 17 47398953 47406077 + MGP_CASTEiJ_P0047670 Dlk2 protein_coding protein_coding MGP_CASTEiJ_T0047671.1 MGP_CASTEiJ_G0023018.1 mouse_genomes_project 17 47399449 47406084 + MGP_CASTEiJ_P0047671 Dlk2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0047672.1 MGP_CASTEiJ_G0023018.1 mouse_genomes_project 17 47399615 47406077 + MGP_CASTEiJ_P0047672 Dlk2 protein_coding protein_coding MGP_CASTEiJ_T0047967.1 MGP_CASTEiJ_G0023110.1 mouse_genomes_project 17 57728540 57737235 + MGP_CASTEiJ_P0047967 Ccdc94 protein_coding protein_coding MGP_CASTEiJ_T0006746.1 MGP_CASTEiJ_G0005572.1 mouse_genomes_project 17 28225013 28249793 + Gm16194 lincRNA lincRNA MGP_CASTEiJ_T0006747.1 MGP_CASTEiJ_G0005572.1 mouse_genomes_project 17 28225038 28249799 + Gm16194 lincRNA lincRNA MGP_CASTEiJ_T0006748.1 MGP_CASTEiJ_G0005572.1 mouse_genomes_project 17 28225049 28233720 + Gm16194 lincRNA lincRNA MGP_CASTEiJ_T0006749.1 MGP_CASTEiJ_G0005572.1 mouse_genomes_project 17 28225067 28249911 + Gm16194 lincRNA lincRNA MGP_CASTEiJ_T0048286.1 MGP_CASTEiJ_G0023212.1 mouse_genomes_project 17 74026148 74027741 - Gm4707 protein_coding translated_processed_pseudogene MGP_CASTEiJ_T0048287.1 MGP_CASTEiJ_G0023212.1 mouse_genomes_project 17 74026846 74027123 - MGP_CASTEiJ_P0048287 Gm4707 protein_coding protein_coding MGP_CASTEiJ_T0048288.1 MGP_CASTEiJ_G0023212.1 mouse_genomes_project 17 74027652 74028218 - MGP_CASTEiJ_P0048288 Gm4707 protein_coding protein_coding MGP_CASTEiJ_T0046273.1 MGP_CASTEiJ_G0022660.1 mouse_genomes_project 17 27229802 27256383 + MGP_CASTEiJ_P0046273 Def6 protein_coding protein_coding MGP_CASTEiJ_T0046274.1 MGP_CASTEiJ_G0022660.1 mouse_genomes_project 17 27229861 27237684 + Def6 protein_coding processed_transcript MGP_CASTEiJ_T0046709.1 MGP_CASTEiJ_G0022766.1 mouse_genomes_project 17 33439392 33444871 - MGP_CASTEiJ_P0046709 Rps28 protein_coding protein_coding MGP_CASTEiJ_T0046712.1 MGP_CASTEiJ_G0022766.1 mouse_genomes_project 17 33443417 33444941 - MGP_CASTEiJ_P0046712 Rps28 protein_coding protein_coding MGP_CASTEiJ_T0046713.1 MGP_CASTEiJ_G0022766.1 mouse_genomes_project 17 33443418 33444725 - MGP_CASTEiJ_P0046713 Rps28 protein_coding protein_coding MGP_CASTEiJ_T0046714.1 MGP_CASTEiJ_G0022766.1 mouse_genomes_project 17 33443431 33444844 - Rps28 protein_coding processed_transcript MGP_CASTEiJ_T0046715.1 MGP_CASTEiJ_G0022766.1 mouse_genomes_project 17 33443431 33444941 - MGP_CASTEiJ_P0046715 Rps28 protein_coding protein_coding MGP_CASTEiJ_T0046716.1 MGP_CASTEiJ_G0022766.1 mouse_genomes_project 17 33443433 33444855 - MGP_CASTEiJ_P0046716 Rps28 protein_coding protein_coding MGP_CASTEiJ_T0046717.1 MGP_CASTEiJ_G0022766.1 mouse_genomes_project 17 33443967 33444863 - Rps28 protein_coding retained_intron MGP_CASTEiJ_T0046281.1 MGP_CASTEiJ_G0022662.1 mouse_genomes_project 17 27349581 27365804 + MGP_CASTEiJ_P0046281 Fance protein_coding protein_coding MGP_CASTEiJ_T0046282.1 MGP_CASTEiJ_G0022662.1 mouse_genomes_project 17 27349598 27365804 + Fance protein_coding retained_intron MGP_CASTEiJ_T0046283.1 MGP_CASTEiJ_G0022662.1 mouse_genomes_project 17 27349617 27365803 + MGP_CASTEiJ_P0046283 Fance protein_coding protein_coding MGP_CASTEiJ_T0046284.1 MGP_CASTEiJ_G0022662.1 mouse_genomes_project 17 27349623 27365805 + MGP_CASTEiJ_P0046284 Fance protein_coding protein_coding MGP_CASTEiJ_T0046285.1 MGP_CASTEiJ_G0022662.1 mouse_genomes_project 17 27349695 27365490 + MGP_CASTEiJ_P0046285 Fance protein_coding protein_coding MGP_CASTEiJ_T0046286.1 MGP_CASTEiJ_G0022662.1 mouse_genomes_project 17 27354966 27360246 + MGP_CASTEiJ_P0046286 Fance protein_coding protein_coding MGP_CASTEiJ_T0046287.1 MGP_CASTEiJ_G0022662.1 mouse_genomes_project 17 27355003 27355998 + Fance protein_coding retained_intron MGP_CASTEiJ_T0046288.1 MGP_CASTEiJ_G0022662.1 mouse_genomes_project 17 27355908 27357120 + Fance protein_coding retained_intron MGP_CASTEiJ_T0046289.1 MGP_CASTEiJ_G0022662.1 mouse_genomes_project 17 27356364 27357786 + Fance protein_coding processed_transcript MGP_CASTEiJ_T0046290.1 MGP_CASTEiJ_G0022662.1 mouse_genomes_project 17 27356419 27365521 + MGP_CASTEiJ_P0046290 Fance protein_coding protein_coding MGP_CASTEiJ_T0046291.1 MGP_CASTEiJ_G0022662.1 mouse_genomes_project 17 27356718 27360230 + Fance protein_coding retained_intron MGP_CASTEiJ_T0046292.1 MGP_CASTEiJ_G0022662.1 mouse_genomes_project 17 27356967 27365686 + MGP_CASTEiJ_P0046292 Fance protein_coding protein_coding MGP_CASTEiJ_T0046293.1 MGP_CASTEiJ_G0022662.1 mouse_genomes_project 17 27357196 27365736 + MGP_CASTEiJ_P0046293 Fance protein_coding protein_coding MGP_CASTEiJ_T0046294.1 MGP_CASTEiJ_G0022662.1 mouse_genomes_project 17 27357305 27365804 + Fance protein_coding processed_transcript MGP_CASTEiJ_T0047423.1 MGP_CASTEiJ_G0022916.1 mouse_genomes_project 17 37526789 37570640 - MGP_CASTEiJ_P0047423 protein_coding protein_coding MGP_CASTEiJ_T0102138.1 MGP_CASTEiJ_G0038863.1 mouse_genomes_project 17 32568190 32575130 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0048071.1 MGP_CASTEiJ_G0023147.1 mouse_genomes_project 17 58713733 58730111 + MGP_CASTEiJ_P0048071 1700061G19Rik protein_coding protein_coding MGP_CASTEiJ_T0048072.1 MGP_CASTEiJ_G0023147.1 mouse_genomes_project 17 58713759 58716073 + 1700061G19Rik protein_coding retained_intron MGP_CASTEiJ_T0047292.1 MGP_CASTEiJ_G0022879.1 mouse_genomes_project 17 36009461 36010792 + Ppp1r10 protein_coding retained_intron MGP_CASTEiJ_T0047293.1 MGP_CASTEiJ_G0022879.1 mouse_genomes_project 17 36009593 36024131 + MGP_CASTEiJ_P0047293 Ppp1r10 protein_coding protein_coding MGP_CASTEiJ_T0047294.1 MGP_CASTEiJ_G0022879.1 mouse_genomes_project 17 36009606 36010368 + Ppp1r10 protein_coding processed_transcript MGP_CASTEiJ_T0047295.1 MGP_CASTEiJ_G0022879.1 mouse_genomes_project 17 36009809 36011386 + Ppp1r10 protein_coding retained_intron MGP_CASTEiJ_T0047296.1 MGP_CASTEiJ_G0022879.1 mouse_genomes_project 17 36010025 36017323 + MGP_CASTEiJ_P0047296 Ppp1r10 protein_coding protein_coding MGP_CASTEiJ_T0047297.1 MGP_CASTEiJ_G0022879.1 mouse_genomes_project 17 36010223 36024131 + MGP_CASTEiJ_P0047297 Ppp1r10 protein_coding protein_coding MGP_CASTEiJ_T0047298.1 MGP_CASTEiJ_G0022879.1 mouse_genomes_project 17 36019516 36021150 + Ppp1r10 protein_coding retained_intron MGP_CASTEiJ_T0045534.1 MGP_CASTEiJ_G0022463.1 mouse_genomes_project 17 19379312 19381752 + MGP_CASTEiJ_P0045534 protein_coding protein_coding MGP_CASTEiJ_T0102123.1 MGP_CASTEiJ_G0038848.1 mouse_genomes_project 17 18411288 18411891 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0047722.1 MGP_CASTEiJ_G0023033.1 mouse_genomes_project 17 47781981 47788352 - MGP_CASTEiJ_P0047722 Klhdc3 protein_coding protein_coding MGP_CASTEiJ_T0047723.1 MGP_CASTEiJ_G0023033.1 mouse_genomes_project 17 47781984 47788352 - MGP_CASTEiJ_P0047723 Klhdc3 protein_coding protein_coding MGP_CASTEiJ_T0102176.1 MGP_CASTEiJ_G0038901.1 mouse_genomes_project 17 37605115 37606043 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0048090.1 MGP_CASTEiJ_G0023157.1 mouse_genomes_project 17 58924232 58933760 + MGP_CASTEiJ_P0048090 Crb3 protein_coding protein_coding MGP_CASTEiJ_T0048091.1 MGP_CASTEiJ_G0023157.1 mouse_genomes_project 17 58928625 58933765 + MGP_CASTEiJ_P0048091 Crb3 protein_coding protein_coding MGP_CASTEiJ_T0048092.1 MGP_CASTEiJ_G0023157.1 mouse_genomes_project 17 58928677 58933764 + MGP_CASTEiJ_P0048092 Crb3 protein_coding protein_coding MGP_CASTEiJ_T0048093.1 MGP_CASTEiJ_G0023157.1 mouse_genomes_project 17 58928693 58933275 + MGP_CASTEiJ_P0048093 Crb3 protein_coding protein_coding MGP_CASTEiJ_T0048094.1 MGP_CASTEiJ_G0023157.1 mouse_genomes_project 17 58928902 58933012 + MGP_CASTEiJ_P0048094 Crb3 protein_coding protein_coding MGP_CASTEiJ_T0006723.1 MGP_CASTEiJ_G0005552.1 mouse_genomes_project 17 14677029 14677890 + lincRNA lincRNA MGP_CASTEiJ_T0046482.1 MGP_CASTEiJ_G0022706.1 mouse_genomes_project 17 30508118 30512590 - MGP_CASTEiJ_P0046482 Tff3 protein_coding protein_coding MGP_CASTEiJ_T0047780.1 MGP_CASTEiJ_G0023054.1 mouse_genomes_project 17 48748364 48752269 - MGP_CASTEiJ_P0047780 Guca1b protein_coding protein_coding MGP_CASTEiJ_T0003653.1 MGP_CASTEiJ_G0003293.1 mouse_genomes_project 17 51272917 51277104 - Gm16555 antisense antisense MGP_CASTEiJ_T0045771.1 MGP_CASTEiJ_G0022538.1 mouse_genomes_project 17 23308582 23309721 - MGP_CASTEiJ_P0045771 Npw protein_coding protein_coding MGP_CASTEiJ_T0048433.1 MGP_CASTEiJ_G0023271.1 mouse_genomes_project 17 84265798 84307992 - MGP_CASTEiJ_P0048433 Thumpd2 protein_coding protein_coding MGP_CASTEiJ_T0045903.1 MGP_CASTEiJ_G0022570.1 mouse_genomes_project 17 23907295 23918598 + MGP_CASTEiJ_P0045903 Gm5819 protein_coding protein_coding MGP_CASTEiJ_T0100775.1 MGP_CASTEiJ_G0037688.1 mouse_genomes_project 17 74233260 74233336 + Gm22858 snoRNA snoRNA MGP_CASTEiJ_T0102130.1 MGP_CASTEiJ_G0038855.1 mouse_genomes_project 17 19450088 19450809 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045478.1 MGP_CASTEiJ_G0022428.1 mouse_genomes_project 17 15585530 15587250 + Spaca6 protein_coding processed_transcript MGP_CASTEiJ_T0045479.1 MGP_CASTEiJ_G0022428.1 mouse_genomes_project 17 15585704 15586886 + Spaca6 protein_coding retained_intron MGP_CASTEiJ_T0045480.1 MGP_CASTEiJ_G0022428.1 mouse_genomes_project 17 15585815 15593931 + MGP_CASTEiJ_P0045480 Spaca6 protein_coding protein_coding MGP_CASTEiJ_T0045481.1 MGP_CASTEiJ_G0022428.1 mouse_genomes_project 17 15585875 15597875 + MGP_CASTEiJ_P0045481 Spaca6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045482.1 MGP_CASTEiJ_G0022428.1 mouse_genomes_project 17 15585991 15593369 + Spaca6 protein_coding retained_intron MGP_CASTEiJ_T0045483.1 MGP_CASTEiJ_G0022428.1 mouse_genomes_project 17 15585991 15593369 + Spaca6 protein_coding processed_transcript MGP_CASTEiJ_T0045484.1 MGP_CASTEiJ_G0022428.1 mouse_genomes_project 17 15586255 15592583 + MGP_CASTEiJ_P0045484 Spaca6 protein_coding protein_coding MGP_CASTEiJ_T0045485.1 MGP_CASTEiJ_G0022428.1 mouse_genomes_project 17 15586854 15591013 + Spaca6 protein_coding retained_intron MGP_CASTEiJ_T0045486.1 MGP_CASTEiJ_G0022428.1 mouse_genomes_project 17 15587755 15591885 + Spaca6 protein_coding retained_intron MGP_CASTEiJ_T0045487.1 MGP_CASTEiJ_G0022428.1 mouse_genomes_project 17 15590808 15593382 + Spaca6 protein_coding retained_intron MGP_CASTEiJ_T0045488.1 MGP_CASTEiJ_G0022428.1 mouse_genomes_project 17 15592363 15593931 + Spaca6 protein_coding retained_intron MGP_CASTEiJ_T0045489.1 MGP_CASTEiJ_G0022428.1 mouse_genomes_project 17 15592553 15593927 + MGP_CASTEiJ_P0045489 Spaca6 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0045490.1 MGP_CASTEiJ_G0022428.1 mouse_genomes_project 17 15593140 15593931 + Spaca6 protein_coding retained_intron MGP_CASTEiJ_T0045491.1 MGP_CASTEiJ_G0022428.1 mouse_genomes_project 17 15593430 15593931 + Spaca6 protein_coding retained_intron MGP_CASTEiJ_T0047375.1 MGP_CASTEiJ_G0022901.1 mouse_genomes_project 17 37214149 37218118 - MGP_CASTEiJ_P0047375 Znrd1 protein_coding protein_coding MGP_CASTEiJ_T0047376.1 MGP_CASTEiJ_G0022901.1 mouse_genomes_project 17 37214151 37218169 - MGP_CASTEiJ_P0047376 Znrd1 protein_coding protein_coding MGP_CASTEiJ_T0047377.1 MGP_CASTEiJ_G0022901.1 mouse_genomes_project 17 37214204 37217954 - MGP_CASTEiJ_P0047377 Znrd1 protein_coding protein_coding MGP_CASTEiJ_T0047378.1 MGP_CASTEiJ_G0022901.1 mouse_genomes_project 17 37214236 37218195 - Znrd1 protein_coding processed_transcript MGP_CASTEiJ_T0102109.1 MGP_CASTEiJ_G0038834.1 mouse_genomes_project 17 15854208 16889082 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0045548.1 MGP_CASTEiJ_G0022474.1 mouse_genomes_project 17 19883760 19897954 + MGP_CASTEiJ_P0045548 Zfp229 protein_coding protein_coding MGP_CASTEiJ_T0045549.1 MGP_CASTEiJ_G0022474.1 mouse_genomes_project 17 19886555 19888957 + Zfp229 protein_coding processed_transcript MGP_CASTEiJ_T0045550.1 MGP_CASTEiJ_G0022474.1 mouse_genomes_project 17 19886588 19887793 + Zfp229 protein_coding processed_transcript MGP_CASTEiJ_T0045551.1 MGP_CASTEiJ_G0022474.1 mouse_genomes_project 17 19886599 19901875 + MGP_CASTEiJ_P0045551 Zfp229 protein_coding protein_coding MGP_CASTEiJ_T0045552.1 MGP_CASTEiJ_G0022474.1 mouse_genomes_project 17 19886599 19924006 + MGP_CASTEiJ_P0045552 Zfp229 protein_coding protein_coding MGP_CASTEiJ_T0045553.1 MGP_CASTEiJ_G0022474.1 mouse_genomes_project 17 19888787 19901876 + MGP_CASTEiJ_P0045553 Zfp229 protein_coding protein_coding MGP_CASTEiJ_T0012853.1 MGP_CASTEiJ_G0011016.1 mouse_genomes_project 17 36032810 36033137 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049555.1 MGP_CASTEiJ_G0023667.1 mouse_genomes_project 18 59354822 59359253 + MGP_CASTEiJ_P0049555 Gm4841 protein_coding protein_coding MGP_CASTEiJ_T0003669.1 MGP_CASTEiJ_G0003307.1 mouse_genomes_project 18 3110160 3123567 + Gm17036 antisense antisense MGP_CASTEiJ_T0003713.1 MGP_CASTEiJ_G0003339.1 mouse_genomes_project 18 74289158 74296815 - 1700120E14Rik antisense antisense MGP_CASTEiJ_T0003714.1 MGP_CASTEiJ_G0003339.1 mouse_genomes_project 18 74289271 74296797 - 1700120E14Rik antisense antisense MGP_CASTEiJ_T0009998.1 MGP_CASTEiJ_G0008186.1 mouse_genomes_project 18 82902869 82902929 + Mir5112 miRNA miRNA MGP_CASTEiJ_T0006847.1 MGP_CASTEiJ_G0005644.1 mouse_genomes_project 18 43235994 43239282 + Gm43425 lincRNA lincRNA MGP_CASTEiJ_T0048776.1 MGP_CASTEiJ_G0023360.1 mouse_genomes_project 18 8994309 9151819 - MGP_CASTEiJ_P0048776 Tmem241 protein_coding protein_coding MGP_CASTEiJ_T0048777.1 MGP_CASTEiJ_G0023360.1 mouse_genomes_project 18 8996539 9151791 - MGP_CASTEiJ_P0048777 Tmem241 protein_coding protein_coding MGP_CASTEiJ_T0048778.1 MGP_CASTEiJ_G0023360.1 mouse_genomes_project 18 9091226 9151819 - MGP_CASTEiJ_P0048778 Tmem241 protein_coding protein_coding MGP_CASTEiJ_T0003687.1 MGP_CASTEiJ_G0003321.1 mouse_genomes_project 18 35340568 35341007 - Gm38097 antisense antisense MGP_CASTEiJ_T0049948.1 MGP_CASTEiJ_G0023781.1 mouse_genomes_project 18 77114459 77191309 + MGP_CASTEiJ_P0049948 St8sia5 protein_coding protein_coding MGP_CASTEiJ_T0049949.1 MGP_CASTEiJ_G0023781.1 mouse_genomes_project 18 77114585 77191179 + MGP_CASTEiJ_P0049949 St8sia5 protein_coding protein_coding MGP_CASTEiJ_T0099575.1 MGP_CASTEiJ_G0036488.1 mouse_genomes_project 18 56598459 56598565 - Gm26038 snRNA snRNA MGP_CASTEiJ_T0006845.1 MGP_CASTEiJ_G0005643.1 mouse_genomes_project 18 36400517 36412465 - 1700086O06Rik lincRNA lincRNA MGP_CASTEiJ_T0006846.1 MGP_CASTEiJ_G0005643.1 mouse_genomes_project 18 36400517 36412832 - 1700086O06Rik lincRNA lincRNA MGP_CASTEiJ_T0006820.1 MGP_CASTEiJ_G0005625.1 mouse_genomes_project 18 1989248 1992554 - Gm26682 lincRNA lincRNA MGP_CASTEiJ_T0049144.1 MGP_CASTEiJ_G0023492.1 mouse_genomes_project 18 34883789 34895809 - MGP_CASTEiJ_P0049144 E230025N22Rik protein_coding protein_coding MGP_CASTEiJ_T0009971.1 MGP_CASTEiJ_G0008159.1 mouse_genomes_project 18 35020619 35020729 + Gm23424 miRNA miRNA MGP_CASTEiJ_T0049565.1 MGP_CASTEiJ_G0023672.1 mouse_genomes_project 18 59510703 59543430 - MGP_CASTEiJ_P0049565 Synpo protein_coding protein_coding MGP_CASTEiJ_T0049566.1 MGP_CASTEiJ_G0023672.1 mouse_genomes_project 18 59510712 59543680 - MGP_CASTEiJ_P0049566 Synpo protein_coding protein_coding MGP_CASTEiJ_T0049567.1 MGP_CASTEiJ_G0023672.1 mouse_genomes_project 18 59510720 59548991 - MGP_CASTEiJ_P0049567 Synpo protein_coding protein_coding MGP_CASTEiJ_T0049568.1 MGP_CASTEiJ_G0023672.1 mouse_genomes_project 18 59510721 59518574 - Synpo protein_coding processed_transcript MGP_CASTEiJ_T0049569.1 MGP_CASTEiJ_G0023672.1 mouse_genomes_project 18 59518282 59543330 - MGP_CASTEiJ_P0049569 Synpo protein_coding protein_coding MGP_CASTEiJ_T0049570.1 MGP_CASTEiJ_G0023672.1 mouse_genomes_project 18 59518283 59528218 - MGP_CASTEiJ_P0049570 Synpo protein_coding protein_coding MGP_CASTEiJ_T0049571.1 MGP_CASTEiJ_G0023672.1 mouse_genomes_project 18 59518285 59567700 - MGP_CASTEiJ_P0049571 Synpo protein_coding protein_coding MGP_CASTEiJ_T0049572.1 MGP_CASTEiJ_G0023672.1 mouse_genomes_project 18 59522185 59542419 - MGP_CASTEiJ_P0049572 Synpo protein_coding protein_coding MGP_CASTEiJ_T0049573.1 MGP_CASTEiJ_G0023672.1 mouse_genomes_project 18 59522336 59543356 - Synpo protein_coding processed_transcript MGP_CASTEiJ_T0049574.1 MGP_CASTEiJ_G0023672.1 mouse_genomes_project 18 59523959 59582635 - Synpo protein_coding processed_transcript MGP_CASTEiJ_T0049575.1 MGP_CASTEiJ_G0023672.1 mouse_genomes_project 18 59548635 59567653 - Synpo protein_coding processed_transcript MGP_CASTEiJ_T0049576.1 MGP_CASTEiJ_G0023672.1 mouse_genomes_project 18 59565039 59567653 - Synpo protein_coding processed_transcript MGP_CASTEiJ_T0048672.1 MGP_CASTEiJ_G0023333.1 mouse_genomes_project 18 2451716 2586564 + Zeb1 protein_coding retained_intron MGP_CASTEiJ_T0048673.1 MGP_CASTEiJ_G0023333.1 mouse_genomes_project 18 2451716 2638795 + MGP_CASTEiJ_P0048673 Zeb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048674.1 MGP_CASTEiJ_G0023333.1 mouse_genomes_project 18 2451716 2638449 + MGP_CASTEiJ_P0048674 Zeb1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048675.1 MGP_CASTEiJ_G0023333.1 mouse_genomes_project 18 2451716 2638412 + MGP_CASTEiJ_P0048675 Zeb1 protein_coding protein_coding MGP_CASTEiJ_T0048676.1 MGP_CASTEiJ_G0023333.1 mouse_genomes_project 18 2453074 2506538 + Zeb1 protein_coding processed_transcript MGP_CASTEiJ_T0048677.1 MGP_CASTEiJ_G0023333.1 mouse_genomes_project 18 2453368 2629720 + MGP_CASTEiJ_P0048677 Zeb1 protein_coding protein_coding MGP_CASTEiJ_T0048678.1 MGP_CASTEiJ_G0023333.1 mouse_genomes_project 18 2453627 2629847 + Zeb1 protein_coding processed_transcript MGP_CASTEiJ_T0048679.1 MGP_CASTEiJ_G0023333.1 mouse_genomes_project 18 2453969 2639621 + Zeb1 protein_coding retained_intron MGP_CASTEiJ_T0048680.1 MGP_CASTEiJ_G0023333.1 mouse_genomes_project 18 2463428 2507980 + Zeb1 protein_coding processed_transcript MGP_CASTEiJ_T0048681.1 MGP_CASTEiJ_G0023333.1 mouse_genomes_project 18 2498071 2650390 + MGP_CASTEiJ_P0048681 Zeb1 protein_coding protein_coding MGP_CASTEiJ_T0048682.1 MGP_CASTEiJ_G0023333.1 mouse_genomes_project 18 2626701 2647730 + Zeb1 protein_coding processed_transcript MGP_CASTEiJ_T0011132.1 MGP_CASTEiJ_G0009320.1 mouse_genomes_project 18 58751726 58752020 - Gm26028 misc_RNA misc_RNA MGP_CASTEiJ_T0049337.1 MGP_CASTEiJ_G0023578.1 mouse_genomes_project 18 38463091 38485447 - MGP_CASTEiJ_P0049337 Yipf5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049338.1 MGP_CASTEiJ_G0023578.1 mouse_genomes_project 18 38468398 38485481 - MGP_CASTEiJ_P0049338 Yipf5 protein_coding protein_coding MGP_CASTEiJ_T0049083.1 MGP_CASTEiJ_G0023474.1 mouse_genomes_project 18 33747610 33752855 - MGP_CASTEiJ_P0049083 Spata24 protein_coding protein_coding MGP_CASTEiJ_T0049084.1 MGP_CASTEiJ_G0023474.1 mouse_genomes_project 18 33750685 33752855 - MGP_CASTEiJ_P0049084 Spata24 protein_coding protein_coding MGP_CASTEiJ_T0049350.1 MGP_CASTEiJ_G0023587.1 mouse_genomes_project 18 40581204 40652510 + MGP_CASTEiJ_P0049350 Rbm27 protein_coding protein_coding MGP_CASTEiJ_T0049351.1 MGP_CASTEiJ_G0023587.1 mouse_genomes_project 18 40581204 40652510 + MGP_CASTEiJ_P0049351 Rbm27 protein_coding protein_coding MGP_CASTEiJ_T0098550.1 MGP_CASTEiJ_G0035481.1 mouse_genomes_project 18 32479005 32479122 + n-R5s24 rRNA rRNA MGP_CASTEiJ_T0006837.1 MGP_CASTEiJ_G0005638.1 mouse_genomes_project 18 31693968 31695063 + Epb41l4aos lincRNA lincRNA MGP_CASTEiJ_T0006838.1 MGP_CASTEiJ_G0005638.1 mouse_genomes_project 18 31694015 31695046 + Epb41l4aos lincRNA lincRNA MGP_CASTEiJ_T0049245.1 MGP_CASTEiJ_G0023560.1 mouse_genomes_project 18 35949781 35977834 + MGP_CASTEiJ_P0049245 Pcdhga8 protein_coding protein_coding MGP_CASTEiJ_T0049246.1 MGP_CASTEiJ_G0023560.1 mouse_genomes_project 18 35950106 35977834 + MGP_CASTEiJ_P0049246 Pcdhga8 protein_coding protein_coding MGP_CASTEiJ_T0049247.1 MGP_CASTEiJ_G0023560.1 mouse_genomes_project 18 35950161 35953261 + Pcdhga8 protein_coding retained_intron MGP_CASTEiJ_T0049382.1 MGP_CASTEiJ_G0023601.1 mouse_genomes_project 18 42508631 42512679 + MGP_CASTEiJ_P0049382 Spink12 protein_coding protein_coding MGP_CASTEiJ_T0016887.1 MGP_CASTEiJ_G0014679.1 mouse_genomes_project 18 56285938 56478505 - 4930511M06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016890.1 MGP_CASTEiJ_G0014679.1 mouse_genomes_project 18 56428866 56478160 - 4930511M06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016894.1 MGP_CASTEiJ_G0014679.1 mouse_genomes_project 18 56471107 56478263 - 4930511M06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016895.1 MGP_CASTEiJ_G0014679.1 mouse_genomes_project 18 56474114 56478701 - 4930511M06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0012949.1 MGP_CASTEiJ_G0011112.1 mouse_genomes_project 18 48802526 48804548 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012930.1 MGP_CASTEiJ_G0011093.1 mouse_genomes_project 18 18486786 18487231 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011127.1 MGP_CASTEiJ_G0009315.1 mouse_genomes_project 18 39248069 39248343 + Gm22483 misc_RNA misc_RNA MGP_CASTEiJ_T0048740.1 MGP_CASTEiJ_G0023348.1 mouse_genomes_project 18 6622967 6623441 - MGP_CASTEiJ_P0048740 Gm17430 protein_coding protein_coding MGP_CASTEiJ_T0049110.1 MGP_CASTEiJ_G0023483.1 mouse_genomes_project 18 34447648 34459716 + MGP_CASTEiJ_P0049110 Pura protein_coding protein_coding MGP_CASTEiJ_T0049544.1 MGP_CASTEiJ_G0023663.1 mouse_genomes_project 18 58038971 58053700 + MGP_CASTEiJ_P0049544 A730017C20Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049545.1 MGP_CASTEiJ_G0023663.1 mouse_genomes_project 18 58039005 58053700 + MGP_CASTEiJ_P0049545 A730017C20Rik protein_coding protein_coding MGP_CASTEiJ_T0049546.1 MGP_CASTEiJ_G0023663.1 mouse_genomes_project 18 58039185 58053700 + MGP_CASTEiJ_P0049546 A730017C20Rik protein_coding protein_coding MGP_CASTEiJ_T0049547.1 MGP_CASTEiJ_G0023663.1 mouse_genomes_project 18 58039189 58052359 + MGP_CASTEiJ_P0049547 A730017C20Rik protein_coding protein_coding MGP_CASTEiJ_T0049548.1 MGP_CASTEiJ_G0023663.1 mouse_genomes_project 18 58039217 58052562 + MGP_CASTEiJ_P0049548 A730017C20Rik protein_coding protein_coding MGP_CASTEiJ_T0049549.1 MGP_CASTEiJ_G0023663.1 mouse_genomes_project 18 58039233 58051417 + A730017C20Rik protein_coding retained_intron MGP_CASTEiJ_T0049550.1 MGP_CASTEiJ_G0023663.1 mouse_genomes_project 18 58039234 58052669 + MGP_CASTEiJ_P0049550 A730017C20Rik protein_coding protein_coding MGP_CASTEiJ_T0048765.1 MGP_CASTEiJ_G0023356.1 mouse_genomes_project 18 7603797 7704660 + MGP_CASTEiJ_P0048765 Mib1 protein_coding protein_coding MGP_CASTEiJ_T0048766.1 MGP_CASTEiJ_G0023356.1 mouse_genomes_project 18 7603904 7698227 + MGP_CASTEiJ_P0048766 Mib1 protein_coding protein_coding MGP_CASTEiJ_T0048767.1 MGP_CASTEiJ_G0023356.1 mouse_genomes_project 18 7603993 7634102 + Mib1 protein_coding retained_intron MGP_CASTEiJ_T0048768.1 MGP_CASTEiJ_G0023356.1 mouse_genomes_project 18 7639855 7704786 + MGP_CASTEiJ_P0048768 Mib1 protein_coding protein_coding MGP_CASTEiJ_T0048769.1 MGP_CASTEiJ_G0023356.1 mouse_genomes_project 18 7679808 7703709 + MGP_CASTEiJ_P0048769 Mib1 protein_coding protein_coding MGP_CASTEiJ_T0006868.1 MGP_CASTEiJ_G0005661.1 mouse_genomes_project 18 82945155 82951386 - 2210420H20Rik lincRNA lincRNA MGP_CASTEiJ_T0102190.1 MGP_CASTEiJ_G0038915.1 mouse_genomes_project 18 35178847 35181238 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0099570.1 MGP_CASTEiJ_G0036483.1 mouse_genomes_project 18 48136882 48137036 - Gm25440 snRNA snRNA MGP_CASTEiJ_T0012946.1 MGP_CASTEiJ_G0011109.1 mouse_genomes_project 18 43493262 43494203 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049987.1 MGP_CASTEiJ_G0023798.1 mouse_genomes_project 18 80301618 80306343 + Gm16286 protein_coding processed_transcript MGP_CASTEiJ_T0049989.1 MGP_CASTEiJ_G0023798.1 mouse_genomes_project 18 80301651 80307582 + MGP_CASTEiJ_P0049989 Gm16286 protein_coding protein_coding MGP_CASTEiJ_T0049990.1 MGP_CASTEiJ_G0023798.1 mouse_genomes_project 18 80301683 80305617 + Gm16286 protein_coding retained_intron MGP_CASTEiJ_T0049991.1 MGP_CASTEiJ_G0023798.1 mouse_genomes_project 18 80301699 80302631 + Gm16286 protein_coding retained_intron MGP_CASTEiJ_T0049993.1 MGP_CASTEiJ_G0023798.1 mouse_genomes_project 18 80301720 80307573 + MGP_CASTEiJ_P0049993 Gm16286 protein_coding protein_coding MGP_CASTEiJ_T0049995.1 MGP_CASTEiJ_G0023798.1 mouse_genomes_project 18 80301748 80307591 + MGP_CASTEiJ_P0049995 Gm16286 protein_coding protein_coding MGP_CASTEiJ_T0049996.1 MGP_CASTEiJ_G0023798.1 mouse_genomes_project 18 80301766 80302537 + Gm16286 protein_coding retained_intron MGP_CASTEiJ_T0049997.1 MGP_CASTEiJ_G0023798.1 mouse_genomes_project 18 80301771 80302631 + Gm16286 protein_coding retained_intron MGP_CASTEiJ_T0049998.1 MGP_CASTEiJ_G0023798.1 mouse_genomes_project 18 80302113 80306337 + Gm16286 protein_coding processed_transcript MGP_CASTEiJ_T0009987.1 MGP_CASTEiJ_G0008175.1 mouse_genomes_project 18 60369283 60369349 - Mir378a miRNA miRNA MGP_CASTEiJ_T0049343.1 MGP_CASTEiJ_G0023583.1 mouse_genomes_project 18 40340058 40461882 + MGP_CASTEiJ_P0049343 Sh3rf2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049344.1 MGP_CASTEiJ_G0023583.1 mouse_genomes_project 18 40342006 40461370 + MGP_CASTEiJ_P0049344 Sh3rf2 protein_coding protein_coding MGP_CASTEiJ_T0049345.1 MGP_CASTEiJ_G0023583.1 mouse_genomes_project 18 40442772 40459050 + Sh3rf2 protein_coding processed_transcript MGP_CASTEiJ_T0049346.1 MGP_CASTEiJ_G0023583.1 mouse_genomes_project 18 40442860 40456065 + Sh3rf2 protein_coding processed_transcript MGP_CASTEiJ_T0000969.1 MGP_CASTEiJ_G0000905.1 mouse_genomes_project 18 54124983 54125415 + TEC TEC MGP_CASTEiJ_T0049307.1 MGP_CASTEiJ_G0023575.1 mouse_genomes_project 18 37055173 37137373 - MGP_CASTEiJ_P0049307 Fgf1 protein_coding protein_coding MGP_CASTEiJ_T0049308.1 MGP_CASTEiJ_G0023575.1 mouse_genomes_project 18 37055175 37149525 - MGP_CASTEiJ_P0049308 Fgf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049309.1 MGP_CASTEiJ_G0023575.1 mouse_genomes_project 18 37056677 37084303 - MGP_CASTEiJ_P0049309 Fgf1 protein_coding protein_coding MGP_CASTEiJ_T0049310.1 MGP_CASTEiJ_G0023575.1 mouse_genomes_project 18 37058405 37076910 - MGP_CASTEiJ_P0049310 Fgf1 protein_coding protein_coding MGP_CASTEiJ_T0049311.1 MGP_CASTEiJ_G0023575.1 mouse_genomes_project 18 37063531 37083686 - MGP_CASTEiJ_P0049311 Fgf1 protein_coding protein_coding MGP_CASTEiJ_T0049312.1 MGP_CASTEiJ_G0023575.1 mouse_genomes_project 18 37063572 37077023 - Fgf1 protein_coding retained_intron MGP_CASTEiJ_T0049313.1 MGP_CASTEiJ_G0023575.1 mouse_genomes_project 18 37076729 37149276 - MGP_CASTEiJ_P0049313 Fgf1 protein_coding protein_coding MGP_CASTEiJ_T0049219.1 MGP_CASTEiJ_G0023543.1 mouse_genomes_project 18 35794710 35977831 + MGP_CASTEiJ_P0049219 Pcdhga2 protein_coding protein_coding MGP_CASTEiJ_T0006841.1 MGP_CASTEiJ_G0005640.1 mouse_genomes_project 18 32808668 32814844 - Gm26538 lincRNA lincRNA MGP_CASTEiJ_T0012932.1 MGP_CASTEiJ_G0011095.1 mouse_genomes_project 18 22952774 22953306 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049340.1 MGP_CASTEiJ_G0023580.1 mouse_genomes_project 18 38526439 38814549 + MGP_CASTEiJ_P0049340 Kctd16 protein_coding protein_coding MGP_CASTEiJ_T0006831.1 MGP_CASTEiJ_G0005632.1 mouse_genomes_project 18 29636042 29645084 - Gm26533 lincRNA lincRNA MGP_CASTEiJ_T0049028.1 MGP_CASTEiJ_G0023456.1 mouse_genomes_project 18 32677043 32716642 - MGP_CASTEiJ_P0049028 Gfra3 protein_coding protein_coding MGP_CASTEiJ_T0049480.1 MGP_CASTEiJ_G0023639.1 mouse_genomes_project 18 51402145 51552517 + MGP_CASTEiJ_P0049480 Sncaip protein_coding protein_coding MGP_CASTEiJ_T0049481.1 MGP_CASTEiJ_G0023639.1 mouse_genomes_project 18 51402504 51476745 + MGP_CASTEiJ_P0049481 Sncaip protein_coding protein_coding MGP_CASTEiJ_T0049482.1 MGP_CASTEiJ_G0023639.1 mouse_genomes_project 18 51476668 51552712 + MGP_CASTEiJ_P0049482 Sncaip protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049483.1 MGP_CASTEiJ_G0023639.1 mouse_genomes_project 18 51476668 51553012 + MGP_CASTEiJ_P0049483 Sncaip protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049484.1 MGP_CASTEiJ_G0023639.1 mouse_genomes_project 18 51476668 51553012 + MGP_CASTEiJ_P0049484 Sncaip protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049485.1 MGP_CASTEiJ_G0023639.1 mouse_genomes_project 18 51476714 51552438 + MGP_CASTEiJ_P0049485 Sncaip protein_coding protein_coding MGP_CASTEiJ_T0049486.1 MGP_CASTEiJ_G0023639.1 mouse_genomes_project 18 51476714 51552438 + MGP_CASTEiJ_P0049486 Sncaip protein_coding protein_coding MGP_CASTEiJ_T0003692.1 MGP_CASTEiJ_G0003326.1 mouse_genomes_project 18 35964984 35966166 - Gm29994 antisense antisense MGP_CASTEiJ_T0009966.1 MGP_CASTEiJ_G0008154.1 mouse_genomes_project 18 21952543 21952604 - Mir187 miRNA miRNA MGP_CASTEiJ_T0049971.1 MGP_CASTEiJ_G0023788.1 mouse_genomes_project 18 77921886 78024533 + MGP_CASTEiJ_P0049971 Epg5 protein_coding protein_coding MGP_CASTEiJ_T0049341.1 MGP_CASTEiJ_G0023581.1 mouse_genomes_project 18 40158278 40238475 - MGP_CASTEiJ_P0049341 Prelid2 protein_coding protein_coding MGP_CASTEiJ_T0050046.1 MGP_CASTEiJ_G0023812.1 mouse_genomes_project 18 84356004 84367346 + MGP_CASTEiJ_P0050046 Zadh2 protein_coding protein_coding MGP_CASTEiJ_T0049771.1 MGP_CASTEiJ_G0023744.1 mouse_genomes_project 18 67883532 67900349 - MGP_CASTEiJ_P0049771 Mc2r protein_coding protein_coding MGP_CASTEiJ_T0099563.1 MGP_CASTEiJ_G0036476.1 mouse_genomes_project 18 30904514 30904618 - Gm22814 snRNA snRNA MGP_CASTEiJ_T0003703.1 MGP_CASTEiJ_G0003335.1 mouse_genomes_project 18 60722705 60724566 + 1500015A07Rik antisense antisense MGP_CASTEiJ_T0003704.1 MGP_CASTEiJ_G0003335.1 mouse_genomes_project 18 60722748 60732156 + 1500015A07Rik antisense antisense MGP_CASTEiJ_T0003705.1 MGP_CASTEiJ_G0003335.1 mouse_genomes_project 18 60730605 60732148 + 1500015A07Rik antisense antisense MGP_CASTEiJ_T0049683.1 MGP_CASTEiJ_G0023710.1 mouse_genomes_project 18 63592684 63625134 - MGP_CASTEiJ_P0049683 Fech protein_coding protein_coding MGP_CASTEiJ_T0049497.1 MGP_CASTEiJ_G0023644.1 mouse_genomes_project 18 52372844 52438131 - MGP_CASTEiJ_P0049497 Cep120 protein_coding protein_coding MGP_CASTEiJ_T0049498.1 MGP_CASTEiJ_G0023644.1 mouse_genomes_project 18 52376365 52438015 - MGP_CASTEiJ_P0049498 Cep120 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006826.1 MGP_CASTEiJ_G0005630.1 mouse_genomes_project 18 14302472 14425130 + 1700001G01Rik lincRNA lincRNA MGP_CASTEiJ_T0006827.1 MGP_CASTEiJ_G0005630.1 mouse_genomes_project 18 14302497 14331121 + 1700001G01Rik lincRNA lincRNA MGP_CASTEiJ_T0006828.1 MGP_CASTEiJ_G0005630.1 mouse_genomes_project 18 14318549 14425130 + 1700001G01Rik lincRNA lincRNA MGP_CASTEiJ_T0006829.1 MGP_CASTEiJ_G0005630.1 mouse_genomes_project 18 14413284 14425090 + 1700001G01Rik lincRNA lincRNA MGP_CASTEiJ_T0049464.1 MGP_CASTEiJ_G0023629.1 mouse_genomes_project 18 48713928 48784569 + MGP_CASTEiJ_P0049464 Hsd17b4 protein_coding protein_coding MGP_CASTEiJ_T0049465.1 MGP_CASTEiJ_G0023629.1 mouse_genomes_project 18 48714221 48729655 + Hsd17b4 protein_coding processed_transcript MGP_CASTEiJ_T0049466.1 MGP_CASTEiJ_G0023629.1 mouse_genomes_project 18 48729410 48733368 + Hsd17b4 protein_coding retained_intron MGP_CASTEiJ_T0049467.1 MGP_CASTEiJ_G0023629.1 mouse_genomes_project 18 48779600 48784272 + Hsd17b4 protein_coding retained_intron MGP_CASTEiJ_T0048993.1 MGP_CASTEiJ_G0023446.1 mouse_genomes_project 18 32288494 32293987 + Srp19 protein_coding processed_transcript MGP_CASTEiJ_T0048994.1 MGP_CASTEiJ_G0023446.1 mouse_genomes_project 18 32288770 32294163 + Srp19 protein_coding processed_transcript MGP_CASTEiJ_T0048995.1 MGP_CASTEiJ_G0023446.1 mouse_genomes_project 18 32288792 32294193 + Srp19 protein_coding retained_intron MGP_CASTEiJ_T0048996.1 MGP_CASTEiJ_G0023446.1 mouse_genomes_project 18 32288792 32294241 + MGP_CASTEiJ_P0048996 Srp19 protein_coding protein_coding MGP_CASTEiJ_T0048997.1 MGP_CASTEiJ_G0023446.1 mouse_genomes_project 18 32288805 32294063 + MGP_CASTEiJ_P0048997 Srp19 protein_coding protein_coding MGP_CASTEiJ_T0048998.1 MGP_CASTEiJ_G0023446.1 mouse_genomes_project 18 32288823 32294195 + MGP_CASTEiJ_P0048998 Srp19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0009957.1 MGP_CASTEiJ_G0008145.1 mouse_genomes_project 18 3393475 3393558 - Mir1893 miRNA miRNA MGP_CASTEiJ_T0049207.1 MGP_CASTEiJ_G0023533.1 mouse_genomes_project 18 35632448 35637658 + MGP_CASTEiJ_P0049207 Pcdhb16 protein_coding protein_coding MGP_CASTEiJ_T0048945.1 MGP_CASTEiJ_G0023422.1 mouse_genomes_project 18 29457934 29459175 + MGP_CASTEiJ_P0048945 B930094E09Rik protein_coding protein_coding MGP_CASTEiJ_T0012961.1 MGP_CASTEiJ_G0011124.1 mouse_genomes_project 18 79944071 79945067 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003675.1 MGP_CASTEiJ_G0003312.1 mouse_genomes_project 18 14025486 14026472 + Gm15485 antisense antisense MGP_CASTEiJ_T0049956.1 MGP_CASTEiJ_G0023783.1 mouse_genomes_project 18 77412379 77529541 - MGP_CASTEiJ_P0049956 Rnf165 protein_coding protein_coding MGP_CASTEiJ_T0049957.1 MGP_CASTEiJ_G0023783.1 mouse_genomes_project 18 77414691 77444153 - MGP_CASTEiJ_P0049957 Rnf165 protein_coding protein_coding MGP_CASTEiJ_T0049958.1 MGP_CASTEiJ_G0023783.1 mouse_genomes_project 18 77418975 77423640 - Rnf165 protein_coding retained_intron MGP_CASTEiJ_T0049959.1 MGP_CASTEiJ_G0023783.1 mouse_genomes_project 18 77423228 77529455 - MGP_CASTEiJ_P0049959 Rnf165 protein_coding protein_coding MGP_CASTEiJ_T0049960.1 MGP_CASTEiJ_G0023783.1 mouse_genomes_project 18 77424806 77463562 - Rnf165 protein_coding processed_transcript MGP_CASTEiJ_T0049961.1 MGP_CASTEiJ_G0023783.1 mouse_genomes_project 18 77523099 77529020 - Rnf165 protein_coding retained_intron MGP_CASTEiJ_T0049962.1 MGP_CASTEiJ_G0023783.1 mouse_genomes_project 18 77524137 77529510 - MGP_CASTEiJ_P0049962 Rnf165 protein_coding protein_coding MGP_CASTEiJ_T0049019.1 MGP_CASTEiJ_G0023455.1 mouse_genomes_project 18 32613428 32637563 - MGP_CASTEiJ_P0049019 Cdc23 protein_coding protein_coding MGP_CASTEiJ_T0049020.1 MGP_CASTEiJ_G0023455.1 mouse_genomes_project 18 32614142 32637563 - MGP_CASTEiJ_P0049020 Cdc23 protein_coding protein_coding MGP_CASTEiJ_T0049021.1 MGP_CASTEiJ_G0023455.1 mouse_genomes_project 18 32616158 32617111 - Cdc23 protein_coding retained_intron MGP_CASTEiJ_T0049022.1 MGP_CASTEiJ_G0023455.1 mouse_genomes_project 18 32618307 32637546 - Cdc23 protein_coding retained_intron MGP_CASTEiJ_T0049023.1 MGP_CASTEiJ_G0023455.1 mouse_genomes_project 18 32618310 32619343 - Cdc23 protein_coding retained_intron MGP_CASTEiJ_T0049024.1 MGP_CASTEiJ_G0023455.1 mouse_genomes_project 18 32619309 32620143 - Cdc23 protein_coding retained_intron MGP_CASTEiJ_T0049025.1 MGP_CASTEiJ_G0023455.1 mouse_genomes_project 18 32625179 32629218 - Cdc23 protein_coding retained_intron MGP_CASTEiJ_T0049026.1 MGP_CASTEiJ_G0023455.1 mouse_genomes_project 18 32631958 32637546 - Cdc23 protein_coding retained_intron MGP_CASTEiJ_T0049027.1 MGP_CASTEiJ_G0023455.1 mouse_genomes_project 18 32632811 32637550 - Cdc23 protein_coding retained_intron MGP_CASTEiJ_T0048799.1 MGP_CASTEiJ_G0023365.1 mouse_genomes_project 18 9374161 9634944 + MGP_CASTEiJ_P0048799 Lama3 protein_coding protein_coding MGP_CASTEiJ_T0048800.1 MGP_CASTEiJ_G0023365.1 mouse_genomes_project 18 9374364 9636114 + MGP_CASTEiJ_P0048800 Lama3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048801.1 MGP_CASTEiJ_G0023365.1 mouse_genomes_project 18 9553077 9634944 + MGP_CASTEiJ_P0048801 Lama3 protein_coding protein_coding MGP_CASTEiJ_T0009979.1 MGP_CASTEiJ_G0008167.1 mouse_genomes_project 18 55401880 55401940 + Mir1258 miRNA miRNA MGP_CASTEiJ_T0049470.1 MGP_CASTEiJ_G0023632.1 mouse_genomes_project 18 49667025 49875134 + MGP_CASTEiJ_P0049470 Prr16 protein_coding protein_coding MGP_CASTEiJ_T0100816.1 MGP_CASTEiJ_G0037729.1 mouse_genomes_project 18 88399862 88399996 - Gm24987 snoRNA snoRNA MGP_CASTEiJ_T0048841.1 MGP_CASTEiJ_G0023381.1 mouse_genomes_project 18 17276915 17327950 - MGP_CASTEiJ_P0048841 Dsc3 protein_coding protein_coding MGP_CASTEiJ_T0048842.1 MGP_CASTEiJ_G0023381.1 mouse_genomes_project 18 17279647 17328174 - MGP_CASTEiJ_P0048842 Dsc3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0098553.1 MGP_CASTEiJ_G0035484.1 mouse_genomes_project 18 57185458 57185562 - Gm25660 rRNA rRNA MGP_CASTEiJ_T0003716.1 MGP_CASTEiJ_G0003341.1 mouse_genomes_project 18 81106053 81107173 + Gm27239 antisense antisense MGP_CASTEiJ_T0048780.1 MGP_CASTEiJ_G0023362.1 mouse_genomes_project 18 9200509 9214979 + 3110002H16Rik protein_coding retained_intron MGP_CASTEiJ_T0048781.1 MGP_CASTEiJ_G0023362.1 mouse_genomes_project 18 9200509 9224072 + MGP_CASTEiJ_P0048781 3110002H16Rik protein_coding protein_coding MGP_CASTEiJ_T0048782.1 MGP_CASTEiJ_G0023362.1 mouse_genomes_project 18 9200531 9214443 + 3110002H16Rik protein_coding retained_intron MGP_CASTEiJ_T0048783.1 MGP_CASTEiJ_G0023362.1 mouse_genomes_project 18 9200544 9224049 + 3110002H16Rik protein_coding retained_intron MGP_CASTEiJ_T0048784.1 MGP_CASTEiJ_G0023362.1 mouse_genomes_project 18 9213193 9218999 + MGP_CASTEiJ_P0048784 3110002H16Rik protein_coding protein_coding MGP_CASTEiJ_T0048785.1 MGP_CASTEiJ_G0023362.1 mouse_genomes_project 18 9214396 9222310 + MGP_CASTEiJ_P0048785 3110002H16Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048786.1 MGP_CASTEiJ_G0023362.1 mouse_genomes_project 18 9219476 9224049 + 3110002H16Rik protein_coding retained_intron MGP_CASTEiJ_T0048787.1 MGP_CASTEiJ_G0023362.1 mouse_genomes_project 18 9219700 9224007 + 3110002H16Rik protein_coding retained_intron MGP_CASTEiJ_T0048788.1 MGP_CASTEiJ_G0023362.1 mouse_genomes_project 18 9223081 9224049 + 3110002H16Rik protein_coding retained_intron MGP_CASTEiJ_T0048972.1 MGP_CASTEiJ_G0023440.1 mouse_genomes_project 18 30834610 31079174 + MGP_CASTEiJ_P0048972 Camk4 protein_coding protein_coding MGP_CASTEiJ_T0048973.1 MGP_CASTEiJ_G0023440.1 mouse_genomes_project 18 30834938 31067541 + MGP_CASTEiJ_P0048973 Camk4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049726.1 MGP_CASTEiJ_G0023721.1 mouse_genomes_project 18 65255211 65273692 - MGP_CASTEiJ_P0049726 Cplx4 protein_coding protein_coding MGP_CASTEiJ_T0049749.1 MGP_CASTEiJ_G0023734.1 mouse_genomes_project 18 67013011 67040692 - MGP_CASTEiJ_P0049749 Cep76 protein_coding protein_coding MGP_CASTEiJ_T0049758.1 MGP_CASTEiJ_G0023739.1 mouse_genomes_project 18 67279735 67291272 + MGP_CASTEiJ_P0049758 protein_coding protein_coding MGP_CASTEiJ_T0009988.1 MGP_CASTEiJ_G0008176.1 mouse_genomes_project 18 60640691 60640761 - Mir145a miRNA miRNA MGP_CASTEiJ_T0012953.1 MGP_CASTEiJ_G0011116.1 mouse_genomes_project 18 54798988 54799993 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0000973.1 MGP_CASTEiJ_G0000909.1 mouse_genomes_project 18 80403759 80405280 - TEC TEC MGP_CASTEiJ_T0048861.1 MGP_CASTEiJ_G0023392.1 mouse_genomes_project 18 18482411 18513322 + MGP_CASTEiJ_P0048861 Mep1b protein_coding protein_coding MGP_CASTEiJ_T0049416.1 MGP_CASTEiJ_G0023615.1 mouse_genomes_project 18 44919564 44945374 - MGP_CASTEiJ_P0049416 Fem1c protein_coding protein_coding MGP_CASTEiJ_T0049381.1 MGP_CASTEiJ_G0023600.1 mouse_genomes_project 18 42470130 42483666 + MGP_CASTEiJ_P0049381 Spink6 protein_coding protein_coding MGP_CASTEiJ_T0048978.1 MGP_CASTEiJ_G0023442.1 mouse_genomes_project 18 31313368 31339982 - MGP_CASTEiJ_P0048978 Nrep protein_coding protein_coding MGP_CASTEiJ_T0048979.1 MGP_CASTEiJ_G0023442.1 mouse_genomes_project 18 31313368 31340828 - MGP_CASTEiJ_P0048979 Nrep protein_coding protein_coding MGP_CASTEiJ_T0048980.1 MGP_CASTEiJ_G0023442.1 mouse_genomes_project 18 31313368 31341111 - MGP_CASTEiJ_P0048980 Nrep protein_coding protein_coding MGP_CASTEiJ_T0012923.1 MGP_CASTEiJ_G0011086.1 mouse_genomes_project 18 9327266 9329291 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099567.1 MGP_CASTEiJ_G0036480.1 mouse_genomes_project 18 41420426 41420533 - Gm22264 snRNA snRNA MGP_CASTEiJ_T0049209.1 MGP_CASTEiJ_G0023535.1 mouse_genomes_project 18 35644106 35649159 + MGP_CASTEiJ_P0049209 Pcdhb18 protein_coding protein_coding MGP_CASTEiJ_T0100800.1 MGP_CASTEiJ_G0037713.1 mouse_genomes_project 18 35832943 35833034 + Gm24401 snoRNA snoRNA MGP_CASTEiJ_T0049171.1 MGP_CASTEiJ_G0023506.1 mouse_genomes_project 18 35146994 35976161 + MGP_CASTEiJ_P0049171 Gm42416 protein_coding protein_coding MGP_CASTEiJ_T0049336.1 MGP_CASTEiJ_G0023577.1 mouse_genomes_project 18 38030187 38032774 + MGP_CASTEiJ_P0049336 Pabpc2 protein_coding protein_coding MGP_CASTEiJ_T0049290.1 MGP_CASTEiJ_G0023569.1 mouse_genomes_project 18 36431075 36442115 - Pcdh12 protein_coding retained_intron MGP_CASTEiJ_T0049291.1 MGP_CASTEiJ_G0023569.1 mouse_genomes_project 18 36431075 36448544 - MGP_CASTEiJ_P0049291 Pcdh12 protein_coding protein_coding MGP_CASTEiJ_T0049292.1 MGP_CASTEiJ_G0023569.1 mouse_genomes_project 18 36432782 36448499 - MGP_CASTEiJ_P0049292 Pcdh12 protein_coding protein_coding MGP_CASTEiJ_T0049293.1 MGP_CASTEiJ_G0023569.1 mouse_genomes_project 18 36444896 36448541 - Pcdh12 protein_coding retained_intron MGP_CASTEiJ_T0048859.1 MGP_CASTEiJ_G0023390.1 mouse_genomes_project 18 18338056 18389727 + MGP_CASTEiJ_P0048859 Rnf125 protein_coding protein_coding MGP_CASTEiJ_T0049385.1 MGP_CASTEiJ_G0023603.1 mouse_genomes_project 18 42579750 42588583 - MGP_CASTEiJ_P0049385 Spinkl protein_coding protein_coding MGP_CASTEiJ_T0049117.1 MGP_CASTEiJ_G0023486.1 mouse_genomes_project 18 34685307 34696157 - MGP_CASTEiJ_P0049117 Hbegf protein_coding protein_coding MGP_CASTEiJ_T0012942.1 MGP_CASTEiJ_G0011105.1 mouse_genomes_project 18 36922353 36922955 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049760.1 MGP_CASTEiJ_G0023741.1 mouse_genomes_project 18 67716856 67761956 - MGP_CASTEiJ_P0049760 Fam210a protein_coding protein_coding MGP_CASTEiJ_T0049761.1 MGP_CASTEiJ_G0023741.1 mouse_genomes_project 18 67732092 67761825 - MGP_CASTEiJ_P0049761 Fam210a protein_coding protein_coding MGP_CASTEiJ_T0012954.1 MGP_CASTEiJ_G0011117.1 mouse_genomes_project 18 59270639 59271855 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0050076.1 MGP_CASTEiJ_G0023823.1 mouse_genomes_project 18 89734140 89811753 + MGP_CASTEiJ_P0050076 Cd226 protein_coding protein_coding MGP_CASTEiJ_T0050077.1 MGP_CASTEiJ_G0023823.1 mouse_genomes_project 18 89734207 89810997 + MGP_CASTEiJ_P0050077 Cd226 protein_coding protein_coding MGP_CASTEiJ_T0049189.1 MGP_CASTEiJ_G0023518.1 mouse_genomes_project 18 35429911 35432499 + MGP_CASTEiJ_P0049189 Pcdhb1 protein_coding protein_coding MGP_CASTEiJ_T0049142.1 MGP_CASTEiJ_G0023491.1 mouse_genomes_project 18 34876791 34878865 + protein_coding processed_transcript MGP_CASTEiJ_T0049143.1 MGP_CASTEiJ_G0023491.1 mouse_genomes_project 18 34876799 34878186 + protein_coding processed_transcript MGP_CASTEiJ_T0049362.1 MGP_CASTEiJ_G0023592.1 mouse_genomes_project 18 41581299 41701153 + MGP_CASTEiJ_P0049362 Stk32a protein_coding protein_coding MGP_CASTEiJ_T0049080.1 MGP_CASTEiJ_G0023473.1 mouse_genomes_project 18 33740478 33745363 - MGP_CASTEiJ_P0049080 Prob1 protein_coding protein_coding MGP_CASTEiJ_T0049081.1 MGP_CASTEiJ_G0023473.1 mouse_genomes_project 18 33740482 33742131 - Prob1 protein_coding processed_transcript MGP_CASTEiJ_T0049082.1 MGP_CASTEiJ_G0023473.1 mouse_genomes_project 18 33742291 33745312 - MGP_CASTEiJ_P0049082 Prob1 protein_coding protein_coding MGP_CASTEiJ_T0049221.1 MGP_CASTEiJ_G0023545.1 mouse_genomes_project 18 35806184 35812178 + protein_coding processed_transcript MGP_CASTEiJ_T0048906.1 MGP_CASTEiJ_G0023406.1 mouse_genomes_project 18 21706428 21799530 + MGP_CASTEiJ_P0048906 Galnt1 protein_coding protein_coding MGP_CASTEiJ_T0048907.1 MGP_CASTEiJ_G0023406.1 mouse_genomes_project 18 21706851 21799522 + MGP_CASTEiJ_P0048907 Galnt1 protein_coding protein_coding MGP_CASTEiJ_T0048908.1 MGP_CASTEiJ_G0023406.1 mouse_genomes_project 18 21739895 21799522 + MGP_CASTEiJ_P0048908 Galnt1 protein_coding protein_coding MGP_CASTEiJ_T0048909.1 MGP_CASTEiJ_G0023406.1 mouse_genomes_project 18 21755353 21783982 + MGP_CASTEiJ_P0048909 Galnt1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050062.1 MGP_CASTEiJ_G0023817.1 mouse_genomes_project 18 85188807 85219034 + MGP_CASTEiJ_P0050062 Cyb5a protein_coding protein_coding MGP_CASTEiJ_T0050063.1 MGP_CASTEiJ_G0023817.1 mouse_genomes_project 18 85188846 85218225 + MGP_CASTEiJ_P0050063 Cyb5a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050064.1 MGP_CASTEiJ_G0023817.1 mouse_genomes_project 18 85188876 85212190 + Cyb5a protein_coding retained_intron MGP_CASTEiJ_T0050065.1 MGP_CASTEiJ_G0023817.1 mouse_genomes_project 18 85189347 85218495 + MGP_CASTEiJ_P0050065 Cyb5a protein_coding protein_coding MGP_CASTEiJ_T0050066.1 MGP_CASTEiJ_G0023817.1 mouse_genomes_project 18 85216230 85218497 + Cyb5a protein_coding retained_intron MGP_CASTEiJ_T0048795.1 MGP_CASTEiJ_G0023364.1 mouse_genomes_project 18 9286737 9345193 - MGP_CASTEiJ_P0048795 Ankrd29 protein_coding protein_coding MGP_CASTEiJ_T0048796.1 MGP_CASTEiJ_G0023364.1 mouse_genomes_project 18 9286740 9310270 - Ankrd29 protein_coding processed_transcript MGP_CASTEiJ_T0048797.1 MGP_CASTEiJ_G0023364.1 mouse_genomes_project 18 9288958 9345120 - MGP_CASTEiJ_P0048797 Ankrd29 protein_coding protein_coding MGP_CASTEiJ_T0048798.1 MGP_CASTEiJ_G0023364.1 mouse_genomes_project 18 9314305 9345202 - MGP_CASTEiJ_P0048798 Ankrd29 protein_coding protein_coding MGP_CASTEiJ_T0049148.1 MGP_CASTEiJ_G0023496.1 mouse_genomes_project 18 34952499 34965504 + MGP_CASTEiJ_P0049148 Ik protein_coding protein_coding MGP_CASTEiJ_T0049149.1 MGP_CASTEiJ_G0023496.1 mouse_genomes_project 18 34952617 34965507 + MGP_CASTEiJ_P0049149 Ik protein_coding unknown_likely_coding MGP_CASTEiJ_T0048912.1 MGP_CASTEiJ_G0023409.1 mouse_genomes_project 18 22090848 22116431 - MGP_CASTEiJ_P0048912 Slc39a6 protein_coding protein_coding MGP_CASTEiJ_T0048913.1 MGP_CASTEiJ_G0023409.1 mouse_genomes_project 18 22093092 22116129 - MGP_CASTEiJ_P0048913 Slc39a6 protein_coding protein_coding MGP_CASTEiJ_T0048914.1 MGP_CASTEiJ_G0023409.1 mouse_genomes_project 18 22108909 22112015 - Slc39a6 protein_coding retained_intron MGP_CASTEiJ_T0048915.1 MGP_CASTEiJ_G0023409.1 mouse_genomes_project 18 22114085 22115907 - MGP_CASTEiJ_P0048915 Slc39a6 protein_coding protein_coding MGP_CASTEiJ_T0049018.1 MGP_CASTEiJ_G0023454.1 mouse_genomes_project 18 32607538 32615082 + MGP_CASTEiJ_P0049018 Kif20a protein_coding unknown_likely_coding MGP_CASTEiJ_T0049348.1 MGP_CASTEiJ_G0023585.1 mouse_genomes_project 18 40486540 40499466 - MGP_CASTEiJ_P0049348 Plac8l1 protein_coding protein_coding MGP_CASTEiJ_T0049047.1 MGP_CASTEiJ_G0023468.1 mouse_genomes_project 18 33642098 33662386 + MGP_CASTEiJ_P0049047 Gm28285 protein_coding protein_coding MGP_CASTEiJ_T0049048.1 MGP_CASTEiJ_G0023468.1 mouse_genomes_project 18 33642102 33669033 + MGP_CASTEiJ_P0049048 Gm28285 protein_coding protein_coding MGP_CASTEiJ_T0049049.1 MGP_CASTEiJ_G0023468.1 mouse_genomes_project 18 33642106 33649610 + Gm28285 protein_coding processed_transcript MGP_CASTEiJ_T0049050.1 MGP_CASTEiJ_G0023468.1 mouse_genomes_project 18 33642106 33662081 + Gm28285 protein_coding processed_transcript MGP_CASTEiJ_T0049051.1 MGP_CASTEiJ_G0023468.1 mouse_genomes_project 18 33642107 33662309 + MGP_CASTEiJ_P0049051 Gm28285 protein_coding protein_coding MGP_CASTEiJ_T0049052.1 MGP_CASTEiJ_G0023468.1 mouse_genomes_project 18 33642116 33671711 + MGP_CASTEiJ_P0049052 Gm28285 protein_coding protein_coding MGP_CASTEiJ_T0049053.1 MGP_CASTEiJ_G0023468.1 mouse_genomes_project 18 33642132 33662051 + Gm28285 protein_coding processed_transcript MGP_CASTEiJ_T0101555.1 MGP_CASTEiJ_G0038435.1 mouse_genomes_project 18 32156433 32171596 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101556.1 MGP_CASTEiJ_G0038435.1 mouse_genomes_project 18 32158437 32158709 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0009974.1 MGP_CASTEiJ_G0008162.1 mouse_genomes_project 18 36130488 36130547 - Mir6980 miRNA miRNA MGP_CASTEiJ_T0006861.1 MGP_CASTEiJ_G0005654.1 mouse_genomes_project 18 65235909 65238823 + Raxos1 lincRNA lincRNA MGP_CASTEiJ_T0098360.1 MGP_CASTEiJ_G0035291.1 mouse_genomes_project 18 77700058 77701302 + pseudogene pseudogene MGP_CASTEiJ_T0049491.1 MGP_CASTEiJ_G0023642.1 mouse_genomes_project 18 52075535 52087167 - MGP_CASTEiJ_P0049491 Ppic protein_coding protein_coding MGP_CASTEiJ_T0048836.1 MGP_CASTEiJ_G0023379.1 mouse_genomes_project 18 13060076 13062679 + MGP_CASTEiJ_P0048836 Gm10036 protein_coding protein_coding MGP_CASTEiJ_T0049238.1 MGP_CASTEiJ_G0023556.1 mouse_genomes_project 18 35880218 35977834 + MGP_CASTEiJ_P0049238 Pcdhgb7 protein_coding protein_coding MGP_CASTEiJ_T0048848.1 MGP_CASTEiJ_G0023384.1 mouse_genomes_project 18 17803473 17841322 + MGP_CASTEiJ_P0048848 Dsg4 protein_coding protein_coding MGP_CASTEiJ_T0011122.1 MGP_CASTEiJ_G0009310.1 mouse_genomes_project 18 30167011 30167317 + Gm22325 misc_RNA misc_RNA MGP_CASTEiJ_T0049527.1 MGP_CASTEiJ_G0023654.1 mouse_genomes_project 18 56042232 56206986 + MGP_CASTEiJ_P0049527 Megf10 protein_coding protein_coding MGP_CASTEiJ_T0049528.1 MGP_CASTEiJ_G0023654.1 mouse_genomes_project 18 56053019 56202236 + MGP_CASTEiJ_P0049528 Megf10 protein_coding protein_coding MGP_CASTEiJ_T0049848.1 MGP_CASTEiJ_G0023752.1 mouse_genomes_project 18 70091346 70106640 - MGP_CASTEiJ_P0049848 Poli protein_coding protein_coding MGP_CASTEiJ_T0049849.1 MGP_CASTEiJ_G0023752.1 mouse_genomes_project 18 70091349 70107123 - MGP_CASTEiJ_P0049849 Poli protein_coding protein_coding MGP_CASTEiJ_T0049850.1 MGP_CASTEiJ_G0023752.1 mouse_genomes_project 18 70091350 70106937 - MGP_CASTEiJ_P0049850 Poli protein_coding protein_coding MGP_CASTEiJ_T0049851.1 MGP_CASTEiJ_G0023752.1 mouse_genomes_project 18 70091351 70106640 - MGP_CASTEiJ_P0049851 Poli protein_coding protein_coding MGP_CASTEiJ_T0049852.1 MGP_CASTEiJ_G0023752.1 mouse_genomes_project 18 70091353 70106770 - MGP_CASTEiJ_P0049852 Poli protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0000965.1 MGP_CASTEiJ_G0000901.1 mouse_genomes_project 18 42523967 42524140 + TEC TEC MGP_CASTEiJ_T0049356.1 MGP_CASTEiJ_G0023591.1 mouse_genomes_project 18 40968520 41244024 - Ppp2r2b protein_coding processed_transcript MGP_CASTEiJ_T0049357.1 MGP_CASTEiJ_G0023591.1 mouse_genomes_project 18 40975963 41243815 - MGP_CASTEiJ_P0049357 Ppp2r2b protein_coding protein_coding MGP_CASTEiJ_T0049358.1 MGP_CASTEiJ_G0023591.1 mouse_genomes_project 18 40975963 41409929 - MGP_CASTEiJ_P0049358 Ppp2r2b protein_coding protein_coding MGP_CASTEiJ_T0049359.1 MGP_CASTEiJ_G0023591.1 mouse_genomes_project 18 40975988 41244164 - MGP_CASTEiJ_P0049359 Ppp2r2b protein_coding protein_coding MGP_CASTEiJ_T0049360.1 MGP_CASTEiJ_G0023591.1 mouse_genomes_project 18 41077886 41288715 - Ppp2r2b protein_coding processed_transcript MGP_CASTEiJ_T0049361.1 MGP_CASTEiJ_G0023591.1 mouse_genomes_project 18 41098405 41243336 - Ppp2r2b protein_coding processed_transcript MGP_CASTEiJ_T0048982.1 MGP_CASTEiJ_G0023444.1 mouse_genomes_project 18 31639279 31933718 - MGP_CASTEiJ_P0048982 Epb41l4a protein_coding unknown_likely_coding MGP_CASTEiJ_T0048983.1 MGP_CASTEiJ_G0023444.1 mouse_genomes_project 18 31695403 31934807 - MGP_CASTEiJ_P0048983 Epb41l4a protein_coding protein_coding MGP_CASTEiJ_T0049742.1 MGP_CASTEiJ_G0023727.1 mouse_genomes_project 18 66585178 66608194 - MGP_CASTEiJ_P0049742 Mppe1 protein_coding protein_coding MGP_CASTEiJ_T0011135.1 MGP_CASTEiJ_G0009323.1 mouse_genomes_project 18 69336855 69336965 - Gm22508 misc_RNA misc_RNA MGP_CASTEiJ_T0012951.1 MGP_CASTEiJ_G0011114.1 mouse_genomes_project 18 54547717 54548684 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100792.1 MGP_CASTEiJ_G0037705.1 mouse_genomes_project 18 29297907 29298040 - Gm25396 snoRNA snoRNA MGP_CASTEiJ_T0048943.1 MGP_CASTEiJ_G0023420.1 mouse_genomes_project 18 29267094 29276736 - MGP_CASTEiJ_P0048943 Syt4 protein_coding protein_coding MGP_CASTEiJ_T0049745.1 MGP_CASTEiJ_G0023730.1 mouse_genomes_project 18 66775248 66787235 + MGP_CASTEiJ_P0049745 Tubb6 protein_coding protein_coding MGP_CASTEiJ_T0049479.1 MGP_CASTEiJ_G0023638.1 mouse_genomes_project 18 51318864 51320854 + MGP_CASTEiJ_P0049479 Gykl1 protein_coding protein_coding MGP_CASTEiJ_T0050027.1 MGP_CASTEiJ_G0023808.1 mouse_genomes_project 18 82638905 82760378 + MGP_CASTEiJ_P0050027 Mbp protein_coding protein_coding MGP_CASTEiJ_T0050028.1 MGP_CASTEiJ_G0023808.1 mouse_genomes_project 18 82638932 82731745 + MGP_CASTEiJ_P0050028 Mbp protein_coding protein_coding MGP_CASTEiJ_T0050029.1 MGP_CASTEiJ_G0023808.1 mouse_genomes_project 18 82638934 82681683 + MGP_CASTEiJ_P0050029 Mbp protein_coding protein_coding MGP_CASTEiJ_T0050030.1 MGP_CASTEiJ_G0023808.1 mouse_genomes_project 18 82638948 82760379 + MGP_CASTEiJ_P0050030 Mbp protein_coding protein_coding MGP_CASTEiJ_T0050031.1 MGP_CASTEiJ_G0023808.1 mouse_genomes_project 18 82639156 82758958 + MGP_CASTEiJ_P0050031 Mbp protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050032.1 MGP_CASTEiJ_G0023808.1 mouse_genomes_project 18 82727581 82758897 + MGP_CASTEiJ_P0050032 Mbp protein_coding protein_coding MGP_CASTEiJ_T0050033.1 MGP_CASTEiJ_G0023808.1 mouse_genomes_project 18 82727634 82760368 + MGP_CASTEiJ_P0050033 Mbp protein_coding protein_coding MGP_CASTEiJ_T0050034.1 MGP_CASTEiJ_G0023808.1 mouse_genomes_project 18 82738018 82759028 + Mbp protein_coding processed_transcript MGP_CASTEiJ_T0049226.1 MGP_CASTEiJ_G0023548.1 mouse_genomes_project 18 35820133 35977834 + MGP_CASTEiJ_P0049226 Pcdhga5 protein_coding protein_coding MGP_CASTEiJ_T0012952.1 MGP_CASTEiJ_G0011115.1 mouse_genomes_project 18 54652223 54653201 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049193.1 MGP_CASTEiJ_G0023521.1 mouse_genomes_project 18 35474261 35477977 + MGP_CASTEiJ_P0049193 Pcdhb4 protein_coding protein_coding MGP_CASTEiJ_T0100811.1 MGP_CASTEiJ_G0037724.1 mouse_genomes_project 18 74792921 74792986 + Gm23301 snoRNA snoRNA MGP_CASTEiJ_T0049376.1 MGP_CASTEiJ_G0023597.1 mouse_genomes_project 18 42176467 42194741 - MGP_CASTEiJ_P0049376 Gm94 protein_coding protein_coding MGP_CASTEiJ_T0049502.1 MGP_CASTEiJ_G0023647.1 mouse_genomes_project 18 55282626 55363334 + MGP_CASTEiJ_P0049502 Gramd3 protein_coding protein_coding MGP_CASTEiJ_T0048834.1 MGP_CASTEiJ_G0023378.1 mouse_genomes_project 18 12672769 12932531 - MGP_CASTEiJ_P0048834 Chst9 protein_coding protein_coding MGP_CASTEiJ_T0048835.1 MGP_CASTEiJ_G0023378.1 mouse_genomes_project 18 12672769 12971909 - MGP_CASTEiJ_P0048835 Chst9 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049178.1 MGP_CASTEiJ_G0023511.1 mouse_genomes_project 18 35174743 35969236 + MGP_CASTEiJ_P0049178 Gm37388 protein_coding protein_coding MGP_CASTEiJ_T0009984.1 MGP_CASTEiJ_G0008172.1 mouse_genomes_project 18 59900650 59900718 + Mir6982 miRNA miRNA MGP_CASTEiJ_T0099587.1 MGP_CASTEiJ_G0036500.1 mouse_genomes_project 18 82512993 82513140 - Gm25060 snRNA snRNA MGP_CASTEiJ_T0049609.1 MGP_CASTEiJ_G0023684.1 mouse_genomes_project 18 60148356 60168828 - MGP_CASTEiJ_P0049609 Slc26a2 protein_coding protein_coding MGP_CASTEiJ_T0049610.1 MGP_CASTEiJ_G0023684.1 mouse_genomes_project 18 60152725 60155871 - MGP_CASTEiJ_P0049610 Slc26a2 protein_coding protein_coding MGP_CASTEiJ_T0049611.1 MGP_CASTEiJ_G0023684.1 mouse_genomes_project 18 60157208 60168591 - MGP_CASTEiJ_P0049611 Slc26a2 protein_coding protein_coding MGP_CASTEiJ_T0049612.1 MGP_CASTEiJ_G0023684.1 mouse_genomes_project 18 60164140 60168568 - Slc26a2 protein_coding retained_intron MGP_CASTEiJ_T0049198.1 MGP_CASTEiJ_G0023525.1 mouse_genomes_project 18 35524695 35526356 + MGP_CASTEiJ_P0049198 protein_coding protein_coding MGP_CASTEiJ_T0049199.1 MGP_CASTEiJ_G0023525.1 mouse_genomes_project 18 35524845 35528352 + MGP_CASTEiJ_P0049199 protein_coding protein_coding MGP_CASTEiJ_T0049451.1 MGP_CASTEiJ_G0023628.1 mouse_genomes_project 18 48555796 48671839 + MGP_CASTEiJ_P0049451 Tnfaip8 protein_coding protein_coding MGP_CASTEiJ_T0049452.1 MGP_CASTEiJ_G0023628.1 mouse_genomes_project 18 48555860 48629113 + Tnfaip8 protein_coding processed_transcript MGP_CASTEiJ_T0049453.1 MGP_CASTEiJ_G0023628.1 mouse_genomes_project 18 48555898 48674067 + MGP_CASTEiJ_P0049453 Tnfaip8 protein_coding protein_coding MGP_CASTEiJ_T0049454.1 MGP_CASTEiJ_G0023628.1 mouse_genomes_project 18 48555904 48688864 + Tnfaip8 protein_coding processed_transcript MGP_CASTEiJ_T0049455.1 MGP_CASTEiJ_G0023628.1 mouse_genomes_project 18 48596351 48671632 + MGP_CASTEiJ_P0049455 Tnfaip8 protein_coding protein_coding MGP_CASTEiJ_T0049456.1 MGP_CASTEiJ_G0023628.1 mouse_genomes_project 18 48607844 48624271 + Tnfaip8 protein_coding processed_transcript MGP_CASTEiJ_T0049457.1 MGP_CASTEiJ_G0023628.1 mouse_genomes_project 18 48607845 48671524 + MGP_CASTEiJ_P0049457 Tnfaip8 protein_coding protein_coding MGP_CASTEiJ_T0049458.1 MGP_CASTEiJ_G0023628.1 mouse_genomes_project 18 48624583 48624960 + MGP_CASTEiJ_P0049458 Tnfaip8 protein_coding protein_coding MGP_CASTEiJ_T0049459.1 MGP_CASTEiJ_G0023628.1 mouse_genomes_project 18 48629506 48631232 + Tnfaip8 protein_coding retained_intron MGP_CASTEiJ_T0049460.1 MGP_CASTEiJ_G0023628.1 mouse_genomes_project 18 48629514 48671195 + MGP_CASTEiJ_P0049460 Tnfaip8 protein_coding protein_coding MGP_CASTEiJ_T0049461.1 MGP_CASTEiJ_G0023628.1 mouse_genomes_project 18 48629517 48671308 + MGP_CASTEiJ_P0049461 Tnfaip8 protein_coding protein_coding MGP_CASTEiJ_T0049462.1 MGP_CASTEiJ_G0023628.1 mouse_genomes_project 18 48631098 48672620 + MGP_CASTEiJ_P0049462 Tnfaip8 protein_coding protein_coding MGP_CASTEiJ_T0049463.1 MGP_CASTEiJ_G0023628.1 mouse_genomes_project 18 48631365 48672470 + MGP_CASTEiJ_P0049463 Tnfaip8 protein_coding protein_coding MGP_CASTEiJ_T0049675.1 MGP_CASTEiJ_G0023707.1 mouse_genomes_project 18 62790995 63088166 + MGP_CASTEiJ_P0049675 Wdr7 protein_coding protein_coding MGP_CASTEiJ_T0049676.1 MGP_CASTEiJ_G0023707.1 mouse_genomes_project 18 62916883 63079869 + MGP_CASTEiJ_P0049676 Wdr7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099582.1 MGP_CASTEiJ_G0036495.1 mouse_genomes_project 18 63962193 63962293 - Gm24504 snRNA snRNA MGP_CASTEiJ_T0048837.1 MGP_CASTEiJ_G0023380.1 mouse_genomes_project 18 13883738 14105288 - MGP_CASTEiJ_P0048837 Cdh2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048838.1 MGP_CASTEiJ_G0023380.1 mouse_genomes_project 18 13883741 14106019 - MGP_CASTEiJ_P0048838 Cdh2 protein_coding protein_coding MGP_CASTEiJ_T0048839.1 MGP_CASTEiJ_G0023380.1 mouse_genomes_project 18 13883886 13967587 - MGP_CASTEiJ_P0048839 Cdh2 protein_coding protein_coding MGP_CASTEiJ_T0048840.1 MGP_CASTEiJ_G0023380.1 mouse_genomes_project 18 14068280 14105300 - Cdh2 protein_coding retained_intron MGP_CASTEiJ_T0049003.1 MGP_CASTEiJ_G0023450.1 mouse_genomes_project 18 32520846 32526815 + MGP_CASTEiJ_P0049003 Wnt8a protein_coding protein_coding MGP_CASTEiJ_T0049180.1 MGP_CASTEiJ_G0023513.1 mouse_genomes_project 18 35196999 35356123 + MGP_CASTEiJ_P0049180 Pcdha11 protein_coding protein_coding MGP_CASTEiJ_T0003676.1 MGP_CASTEiJ_G0003313.1 mouse_genomes_project 18 17977407 18037235 - Gm16090 antisense antisense MGP_CASTEiJ_T0049233.1 MGP_CASTEiJ_G0023553.1 mouse_genomes_project 18 35857977 35977834 + MGP_CASTEiJ_P0049233 Pcdhgb5 protein_coding protein_coding MGP_CASTEiJ_T0049234.1 MGP_CASTEiJ_G0023553.1 mouse_genomes_project 18 35858022 35862592 + Pcdhgb5 protein_coding retained_intron MGP_CASTEiJ_T0048829.1 MGP_CASTEiJ_G0023375.1 mouse_genomes_project 18 11959244 12084525 + MGP_CASTEiJ_P0048829 Taf4b protein_coding protein_coding MGP_CASTEiJ_T0048830.1 MGP_CASTEiJ_G0023375.1 mouse_genomes_project 18 11959666 12086248 + MGP_CASTEiJ_P0048830 Taf4b protein_coding unknown_likely_coding MGP_CASTEiJ_T0048849.1 MGP_CASTEiJ_G0023385.1 mouse_genomes_project 18 17884973 17916330 + MGP_CASTEiJ_P0048849 Dsg3 protein_coding protein_coding MGP_CASTEiJ_T0050042.1 MGP_CASTEiJ_G0023810.1 mouse_genomes_project 18 83155175 83210741 + MGP_CASTEiJ_P0050042 Zfp516 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050043.1 MGP_CASTEiJ_G0023810.1 mouse_genomes_project 18 83160964 83232018 + MGP_CASTEiJ_P0050043 Zfp516 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048720.1 MGP_CASTEiJ_G0023342.1 mouse_genomes_project 18 4777782 4780626 + MGP_CASTEiJ_P0048720 Wac protein_coding protein_coding MGP_CASTEiJ_T0048721.1 MGP_CASTEiJ_G0023342.1 mouse_genomes_project 18 4778003 4834742 + MGP_CASTEiJ_P0048721 Wac protein_coding protein_coding MGP_CASTEiJ_T0048722.1 MGP_CASTEiJ_G0023342.1 mouse_genomes_project 18 4778133 4780551 + MGP_CASTEiJ_P0048722 Wac protein_coding protein_coding MGP_CASTEiJ_T0048723.1 MGP_CASTEiJ_G0023342.1 mouse_genomes_project 18 4778134 4841804 + MGP_CASTEiJ_P0048723 Wac protein_coding protein_coding MGP_CASTEiJ_T0048724.1 MGP_CASTEiJ_G0023342.1 mouse_genomes_project 18 4778178 4780728 + Wac protein_coding retained_intron MGP_CASTEiJ_T0048725.1 MGP_CASTEiJ_G0023342.1 mouse_genomes_project 18 4778471 4829026 + MGP_CASTEiJ_P0048725 Wac protein_coding protein_coding MGP_CASTEiJ_T0048726.1 MGP_CASTEiJ_G0023342.1 mouse_genomes_project 18 4778657 4829219 + MGP_CASTEiJ_P0048726 Wac protein_coding protein_coding MGP_CASTEiJ_T0048727.1 MGP_CASTEiJ_G0023342.1 mouse_genomes_project 18 4778678 4817252 + MGP_CASTEiJ_P0048727 Wac protein_coding protein_coding MGP_CASTEiJ_T0048728.1 MGP_CASTEiJ_G0023342.1 mouse_genomes_project 18 4780543 4841810 + MGP_CASTEiJ_P0048728 Wac protein_coding protein_coding MGP_CASTEiJ_T0048729.1 MGP_CASTEiJ_G0023342.1 mouse_genomes_project 18 4780649 4834249 + MGP_CASTEiJ_P0048729 Wac protein_coding protein_coding MGP_CASTEiJ_T0048730.1 MGP_CASTEiJ_G0023342.1 mouse_genomes_project 18 4817234 4829226 + MGP_CASTEiJ_P0048730 Wac protein_coding protein_coding MGP_CASTEiJ_T0048731.1 MGP_CASTEiJ_G0023342.1 mouse_genomes_project 18 4823566 4829314 + Wac protein_coding retained_intron MGP_CASTEiJ_T0048732.1 MGP_CASTEiJ_G0023342.1 mouse_genomes_project 18 4823584 4831271 + MGP_CASTEiJ_P0048732 Wac protein_coding protein_coding MGP_CASTEiJ_T0048733.1 MGP_CASTEiJ_G0023342.1 mouse_genomes_project 18 4830297 4891204 + MGP_CASTEiJ_P0048733 Wac protein_coding protein_coding MGP_CASTEiJ_T0048954.1 MGP_CASTEiJ_G0023429.1 mouse_genomes_project 18 29794833 29824988 + MGP_CASTEiJ_P0048954 Lims2 protein_coding protein_coding MGP_CASTEiJ_T0048956.1 MGP_CASTEiJ_G0023429.1 mouse_genomes_project 18 29818609 29824355 + MGP_CASTEiJ_P0048956 Lims2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0000962.1 MGP_CASTEiJ_G0000898.1 mouse_genomes_project 18 2441011 2444673 - TEC TEC MGP_CASTEiJ_T0100805.1 MGP_CASTEiJ_G0037718.1 mouse_genomes_project 18 57583127 57583258 - Gm23270 snoRNA snoRNA MGP_CASTEiJ_T0009981.1 MGP_CASTEiJ_G0008169.1 mouse_genomes_project 18 58584648 58584755 + Mir6355 miRNA miRNA MGP_CASTEiJ_T0048655.1 MGP_CASTEiJ_G0023331.1 mouse_genomes_project 18 1735703 1944694 + MGP_CASTEiJ_P0048655 Svil protein_coding protein_coding MGP_CASTEiJ_T0048656.1 MGP_CASTEiJ_G0023331.1 mouse_genomes_project 18 1735730 1884430 + Svil protein_coding retained_intron MGP_CASTEiJ_T0048657.1 MGP_CASTEiJ_G0023331.1 mouse_genomes_project 18 1735868 1884346 + Svil protein_coding retained_intron MGP_CASTEiJ_T0048658.1 MGP_CASTEiJ_G0023331.1 mouse_genomes_project 18 1736889 1944702 + MGP_CASTEiJ_P0048658 Svil protein_coding protein_coding MGP_CASTEiJ_T0048659.1 MGP_CASTEiJ_G0023331.1 mouse_genomes_project 18 1737085 1944186 + MGP_CASTEiJ_P0048659 Svil protein_coding unknown_likely_coding MGP_CASTEiJ_T0048660.1 MGP_CASTEiJ_G0023331.1 mouse_genomes_project 18 1814952 1873060 + MGP_CASTEiJ_P0048660 Svil protein_coding protein_coding MGP_CASTEiJ_T0048661.1 MGP_CASTEiJ_G0023331.1 mouse_genomes_project 18 1815757 1944015 + MGP_CASTEiJ_P0048661 Svil protein_coding protein_coding MGP_CASTEiJ_T0048662.1 MGP_CASTEiJ_G0023331.1 mouse_genomes_project 18 1816075 1825449 + Svil protein_coding processed_transcript MGP_CASTEiJ_T0048663.1 MGP_CASTEiJ_G0023331.1 mouse_genomes_project 18 1861771 1944697 + MGP_CASTEiJ_P0048663 Svil protein_coding unknown_likely_coding MGP_CASTEiJ_T0048664.1 MGP_CASTEiJ_G0023331.1 mouse_genomes_project 18 1866467 1943845 + MGP_CASTEiJ_P0048664 Svil protein_coding protein_coding MGP_CASTEiJ_T0048665.1 MGP_CASTEiJ_G0023331.1 mouse_genomes_project 18 1866469 1943569 + MGP_CASTEiJ_P0048665 Svil protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048666.1 MGP_CASTEiJ_G0023331.1 mouse_genomes_project 18 1872757 1944691 + MGP_CASTEiJ_P0048666 Svil protein_coding protein_coding MGP_CASTEiJ_T0048667.1 MGP_CASTEiJ_G0023331.1 mouse_genomes_project 18 1891901 1944694 + MGP_CASTEiJ_P0048667 Svil protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048668.1 MGP_CASTEiJ_G0023331.1 mouse_genomes_project 18 1923059 1924189 + Svil protein_coding retained_intron MGP_CASTEiJ_T0048669.1 MGP_CASTEiJ_G0023331.1 mouse_genomes_project 18 1932215 1942426 + MGP_CASTEiJ_P0048669 Svil protein_coding protein_coding MGP_CASTEiJ_T0048670.1 MGP_CASTEiJ_G0023331.1 mouse_genomes_project 18 1939679 1944621 + Svil protein_coding retained_intron MGP_CASTEiJ_T0049167.1 MGP_CASTEiJ_G0023504.1 mouse_genomes_project 18 35140355 35356123 + MGP_CASTEiJ_P0049167 Pcdha3 protein_coding protein_coding MGP_CASTEiJ_T0099558.1 MGP_CASTEiJ_G0036471.1 mouse_genomes_project 18 9195851 9195969 + Gm25289 snRNA snRNA MGP_CASTEiJ_T0100785.1 MGP_CASTEiJ_G0037698.1 mouse_genomes_project 18 7635918 7636040 + Gm25116 snoRNA snoRNA MGP_CASTEiJ_T0049863.1 MGP_CASTEiJ_G0023756.1 mouse_genomes_project 18 73364768 73424629 - MGP_CASTEiJ_P0049863 Smad4 protein_coding protein_coding MGP_CASTEiJ_T0049864.1 MGP_CASTEiJ_G0023756.1 mouse_genomes_project 18 73365756 73409309 - MGP_CASTEiJ_P0049864 Smad4 protein_coding protein_coding MGP_CASTEiJ_T0049865.1 MGP_CASTEiJ_G0023756.1 mouse_genomes_project 18 73365913 73368328 - Smad4 protein_coding processed_transcript MGP_CASTEiJ_T0049866.1 MGP_CASTEiJ_G0023756.1 mouse_genomes_project 18 73365967 73375810 - Smad4 protein_coding processed_transcript MGP_CASTEiJ_T0049867.1 MGP_CASTEiJ_G0023756.1 mouse_genomes_project 18 73365978 73391200 - Smad4 protein_coding processed_transcript MGP_CASTEiJ_T0049868.1 MGP_CASTEiJ_G0023756.1 mouse_genomes_project 18 73387216 73406228 - Smad4 protein_coding processed_transcript MGP_CASTEiJ_T0011129.1 MGP_CASTEiJ_G0009317.1 mouse_genomes_project 18 42159452 42159765 + Gm23894 misc_RNA misc_RNA MGP_CASTEiJ_T0009962.1 MGP_CASTEiJ_G0008150.1 mouse_genomes_project 18 7666893 7667015 + Mir1b miRNA miRNA MGP_CASTEiJ_T0048918.1 MGP_CASTEiJ_G0023412.1 mouse_genomes_project 18 22224828 22225137 - MGP_CASTEiJ_P0048918 Gm9955 protein_coding protein_coding MGP_CASTEiJ_T0050000.1 MGP_CASTEiJ_G0023800.1 mouse_genomes_project 18 80325447 80343288 - MGP_CASTEiJ_P0050000 Hsbp1l1 protein_coding protein_coding MGP_CASTEiJ_T0049983.1 MGP_CASTEiJ_G0023795.1 mouse_genomes_project 18 80173312 80176508 - MGP_CASTEiJ_P0049983 Gm21886 protein_coding protein_coding MGP_CASTEiJ_T0006858.1 MGP_CASTEiJ_G0005652.1 mouse_genomes_project 18 61787147 61791088 - 2700046A07Rik lincRNA lincRNA MGP_CASTEiJ_T0006859.1 MGP_CASTEiJ_G0005652.1 mouse_genomes_project 18 61789545 61791120 - 2700046A07Rik lincRNA lincRNA MGP_CASTEiJ_T0049248.1 MGP_CASTEiJ_G0023561.1 mouse_genomes_project 18 35954205 35977834 + MGP_CASTEiJ_P0049248 Pcdhgc5 protein_coding protein_coding MGP_CASTEiJ_T0049249.1 MGP_CASTEiJ_G0023561.1 mouse_genomes_project 18 35954244 35976012 + MGP_CASTEiJ_P0049249 Pcdhgc5 protein_coding protein_coding MGP_CASTEiJ_T0049250.1 MGP_CASTEiJ_G0023561.1 mouse_genomes_project 18 35954258 35976161 + MGP_CASTEiJ_P0049250 Pcdhgc5 protein_coding protein_coding MGP_CASTEiJ_T0049251.1 MGP_CASTEiJ_G0023561.1 mouse_genomes_project 18 35954346 35976125 + Pcdhgc5 protein_coding retained_intron MGP_CASTEiJ_T0050001.1 MGP_CASTEiJ_G0023801.1 mouse_genomes_project 18 80349482 80392621 + MGP_CASTEiJ_P0050001 Pqlc1 protein_coding protein_coding MGP_CASTEiJ_T0050002.1 MGP_CASTEiJ_G0023801.1 mouse_genomes_project 18 80349532 80383405 + MGP_CASTEiJ_P0050002 Pqlc1 protein_coding protein_coding MGP_CASTEiJ_T0050003.1 MGP_CASTEiJ_G0023801.1 mouse_genomes_project 18 80351408 80392709 + MGP_CASTEiJ_P0050003 Pqlc1 protein_coding protein_coding MGP_CASTEiJ_T0050004.1 MGP_CASTEiJ_G0023801.1 mouse_genomes_project 18 80351999 80384091 + MGP_CASTEiJ_P0050004 Pqlc1 protein_coding protein_coding MGP_CASTEiJ_T0050005.1 MGP_CASTEiJ_G0023801.1 mouse_genomes_project 18 80352447 80392700 + MGP_CASTEiJ_P0050005 Pqlc1 protein_coding protein_coding MGP_CASTEiJ_T0050006.1 MGP_CASTEiJ_G0023801.1 mouse_genomes_project 18 80352451 80375158 + Pqlc1 protein_coding retained_intron MGP_CASTEiJ_T0050007.1 MGP_CASTEiJ_G0023801.1 mouse_genomes_project 18 80352469 80392708 + MGP_CASTEiJ_P0050007 Pqlc1 protein_coding protein_coding MGP_CASTEiJ_T0050008.1 MGP_CASTEiJ_G0023801.1 mouse_genomes_project 18 80352470 80371343 + Pqlc1 protein_coding retained_intron MGP_CASTEiJ_T0050009.1 MGP_CASTEiJ_G0023801.1 mouse_genomes_project 18 80352470 80392698 + MGP_CASTEiJ_P0050009 Pqlc1 protein_coding protein_coding MGP_CASTEiJ_T0050010.1 MGP_CASTEiJ_G0023801.1 mouse_genomes_project 18 80352481 80392696 + MGP_CASTEiJ_P0050010 Pqlc1 protein_coding protein_coding MGP_CASTEiJ_T0050011.1 MGP_CASTEiJ_G0023801.1 mouse_genomes_project 18 80360516 80361162 + Pqlc1 protein_coding processed_transcript MGP_CASTEiJ_T0049054.1 MGP_CASTEiJ_G0023469.1 mouse_genomes_project 18 33652274 33662591 + MGP_CASTEiJ_P0049054 Matr3 protein_coding protein_coding MGP_CASTEiJ_T0049055.1 MGP_CASTEiJ_G0023469.1 mouse_genomes_project 18 33652320 33662224 + MGP_CASTEiJ_P0049055 Matr3 protein_coding protein_coding MGP_CASTEiJ_T0049056.1 MGP_CASTEiJ_G0023469.1 mouse_genomes_project 18 33652339 33680635 + MGP_CASTEiJ_P0049056 Matr3 protein_coding protein_coding MGP_CASTEiJ_T0049057.1 MGP_CASTEiJ_G0023469.1 mouse_genomes_project 18 33652345 33680658 + MGP_CASTEiJ_P0049057 Matr3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049058.1 MGP_CASTEiJ_G0023469.1 mouse_genomes_project 18 33652347 33680618 + MGP_CASTEiJ_P0049058 Matr3 protein_coding protein_coding MGP_CASTEiJ_T0049059.1 MGP_CASTEiJ_G0023469.1 mouse_genomes_project 18 33652427 33680566 + MGP_CASTEiJ_P0049059 Matr3 protein_coding protein_coding MGP_CASTEiJ_T0049060.1 MGP_CASTEiJ_G0023469.1 mouse_genomes_project 18 33652615 33669102 + MGP_CASTEiJ_P0049060 Matr3 protein_coding protein_coding MGP_CASTEiJ_T0049061.1 MGP_CASTEiJ_G0023469.1 mouse_genomes_project 18 33652811 33662304 + MGP_CASTEiJ_P0049061 Matr3 protein_coding protein_coding MGP_CASTEiJ_T0049062.1 MGP_CASTEiJ_G0023469.1 mouse_genomes_project 18 33652817 33669387 + MGP_CASTEiJ_P0049062 Matr3 protein_coding protein_coding MGP_CASTEiJ_T0049063.1 MGP_CASTEiJ_G0023469.1 mouse_genomes_project 18 33662027 33663806 + Matr3 protein_coding retained_intron MGP_CASTEiJ_T0049064.1 MGP_CASTEiJ_G0023469.1 mouse_genomes_project 18 33662124 33680467 + MGP_CASTEiJ_P0049064 Matr3 protein_coding protein_coding MGP_CASTEiJ_T0049065.1 MGP_CASTEiJ_G0023469.1 mouse_genomes_project 18 33668001 33669370 + Matr3 protein_coding retained_intron MGP_CASTEiJ_T0049066.1 MGP_CASTEiJ_G0023469.1 mouse_genomes_project 18 33669120 33670828 + Matr3 protein_coding retained_intron MGP_CASTEiJ_T0048958.1 MGP_CASTEiJ_G0023432.1 mouse_genomes_project 18 29937181 29974977 + MGP_CASTEiJ_P0048958 Iws1 protein_coding protein_coding MGP_CASTEiJ_T0049733.1 MGP_CASTEiJ_G0023723.1 mouse_genomes_project 18 65357936 65622698 - Ccbe1 protein_coding processed_transcript MGP_CASTEiJ_T0049734.1 MGP_CASTEiJ_G0023723.1 mouse_genomes_project 18 65369952 65623040 - MGP_CASTEiJ_P0049734 Ccbe1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049735.1 MGP_CASTEiJ_G0023723.1 mouse_genomes_project 18 65374056 65623090 - MGP_CASTEiJ_P0049735 Ccbe1 protein_coding protein_coding MGP_CASTEiJ_T0049736.1 MGP_CASTEiJ_G0023723.1 mouse_genomes_project 18 65596645 65634019 - Ccbe1 protein_coding processed_transcript MGP_CASTEiJ_T0049121.1 MGP_CASTEiJ_G0023488.1 mouse_genomes_project 18 34745245 34772091 + MGP_CASTEiJ_P0049121 Ankhd1 protein_coding protein_coding MGP_CASTEiJ_T0049122.1 MGP_CASTEiJ_G0023488.1 mouse_genomes_project 18 34745869 34852971 + MGP_CASTEiJ_P0049122 Ankhd1 protein_coding protein_coding MGP_CASTEiJ_T0049123.1 MGP_CASTEiJ_G0023488.1 mouse_genomes_project 18 34745869 34852971 + MGP_CASTEiJ_P0049123 Ankhd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049124.1 MGP_CASTEiJ_G0023488.1 mouse_genomes_project 18 34745936 34859989 + MGP_CASTEiJ_P0049124 Ankhd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049125.1 MGP_CASTEiJ_G0023488.1 mouse_genomes_project 18 34793106 34818048 + MGP_CASTEiJ_P0049125 Ankhd1 protein_coding protein_coding MGP_CASTEiJ_T0049126.1 MGP_CASTEiJ_G0023488.1 mouse_genomes_project 18 34798461 34827511 + Ankhd1 protein_coding processed_transcript MGP_CASTEiJ_T0049127.1 MGP_CASTEiJ_G0023488.1 mouse_genomes_project 18 34805679 34827499 + MGP_CASTEiJ_P0049127 Ankhd1 protein_coding protein_coding MGP_CASTEiJ_T0049128.1 MGP_CASTEiJ_G0023488.1 mouse_genomes_project 18 34807587 34817638 + Ankhd1 protein_coding retained_intron MGP_CASTEiJ_T0049129.1 MGP_CASTEiJ_G0023488.1 mouse_genomes_project 18 34831448 34836141 + MGP_CASTEiJ_P0049129 Ankhd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049130.1 MGP_CASTEiJ_G0023488.1 mouse_genomes_project 18 34831674 34836147 + MGP_CASTEiJ_P0049130 Ankhd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049131.1 MGP_CASTEiJ_G0023488.1 mouse_genomes_project 18 34834533 34837433 + Ankhd1 protein_coding retained_intron MGP_CASTEiJ_T0049132.1 MGP_CASTEiJ_G0023488.1 mouse_genomes_project 18 34837460 34852976 + MGP_CASTEiJ_P0049132 Ankhd1 protein_coding protein_coding MGP_CASTEiJ_T0049133.1 MGP_CASTEiJ_G0023488.1 mouse_genomes_project 18 34840937 34859989 + MGP_CASTEiJ_P0049133 Ankhd1 protein_coding protein_coding MGP_CASTEiJ_T0049134.1 MGP_CASTEiJ_G0023488.1 mouse_genomes_project 18 34849570 34852872 + MGP_CASTEiJ_P0049134 Ankhd1 protein_coding protein_coding MGP_CASTEiJ_T0011125.1 MGP_CASTEiJ_G0009313.1 mouse_genomes_project 18 36790668 36790787 + Gm27804 misc_RNA misc_RNA MGP_CASTEiJ_T0006869.1 MGP_CASTEiJ_G0005662.1 mouse_genomes_project 18 83057666 83073534 + 4930445N18Rik lincRNA lincRNA MGP_CASTEiJ_T0006870.1 MGP_CASTEiJ_G0005662.1 mouse_genomes_project 18 83057669 83060946 + 4930445N18Rik lincRNA lincRNA MGP_CASTEiJ_T0049923.1 MGP_CASTEiJ_G0023777.1 mouse_genomes_project 18 76824183 76868329 + MGP_CASTEiJ_P0049923 Hdhd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049924.1 MGP_CASTEiJ_G0023777.1 mouse_genomes_project 18 76840793 76858720 + MGP_CASTEiJ_P0049924 Hdhd2 protein_coding protein_coding MGP_CASTEiJ_T0049925.1 MGP_CASTEiJ_G0023777.1 mouse_genomes_project 18 76840793 76869053 + MGP_CASTEiJ_P0049925 Hdhd2 protein_coding protein_coding MGP_CASTEiJ_T0049926.1 MGP_CASTEiJ_G0023777.1 mouse_genomes_project 18 76840802 76867594 + MGP_CASTEiJ_P0049926 Hdhd2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049927.1 MGP_CASTEiJ_G0023777.1 mouse_genomes_project 18 76840804 76858720 + MGP_CASTEiJ_P0049927 Hdhd2 protein_coding protein_coding MGP_CASTEiJ_T0049928.1 MGP_CASTEiJ_G0023777.1 mouse_genomes_project 18 76840804 76868329 + MGP_CASTEiJ_P0049928 Hdhd2 protein_coding protein_coding MGP_CASTEiJ_T0049929.1 MGP_CASTEiJ_G0023777.1 mouse_genomes_project 18 76840829 76853615 + MGP_CASTEiJ_P0049929 Hdhd2 protein_coding protein_coding MGP_CASTEiJ_T0049930.1 MGP_CASTEiJ_G0023777.1 mouse_genomes_project 18 76841062 76851775 + MGP_CASTEiJ_P0049930 Hdhd2 protein_coding protein_coding MGP_CASTEiJ_T0049931.1 MGP_CASTEiJ_G0023777.1 mouse_genomes_project 18 76841062 76869785 + MGP_CASTEiJ_P0049931 Hdhd2 protein_coding protein_coding MGP_CASTEiJ_T0049932.1 MGP_CASTEiJ_G0023777.1 mouse_genomes_project 18 76841095 76869053 + MGP_CASTEiJ_P0049932 Hdhd2 protein_coding protein_coding MGP_CASTEiJ_T0049933.1 MGP_CASTEiJ_G0023777.1 mouse_genomes_project 18 76841114 76869785 + MGP_CASTEiJ_P0049933 Hdhd2 protein_coding protein_coding MGP_CASTEiJ_T0049373.1 MGP_CASTEiJ_G0023596.1 mouse_genomes_project 18 42163556 42166668 + MGP_CASTEiJ_P0049373 Scgb3a2 protein_coding protein_coding MGP_CASTEiJ_T0049374.1 MGP_CASTEiJ_G0023596.1 mouse_genomes_project 18 42163594 42166668 + MGP_CASTEiJ_P0049374 Scgb3a2 protein_coding protein_coding MGP_CASTEiJ_T0049375.1 MGP_CASTEiJ_G0023596.1 mouse_genomes_project 18 42163594 42166668 + MGP_CASTEiJ_P0049375 Scgb3a2 protein_coding protein_coding MGP_CASTEiJ_T0049862.1 MGP_CASTEiJ_G0023755.1 mouse_genomes_project 18 73295091 73316068 + MGP_CASTEiJ_P0049862 Mex3c protein_coding protein_coding MGP_CASTEiJ_T0100813.1 MGP_CASTEiJ_G0037726.1 mouse_genomes_project 18 77667018 77667150 + Gm26014 snoRNA snoRNA MGP_CASTEiJ_T0048889.1 MGP_CASTEiJ_G0023400.1 mouse_genomes_project 18 21239300 21261938 + Mapre2 protein_coding retained_intron MGP_CASTEiJ_T0048890.1 MGP_CASTEiJ_G0023400.1 mouse_genomes_project 18 21239306 21364944 + MGP_CASTEiJ_P0048890 Mapre2 protein_coding protein_coding MGP_CASTEiJ_T0048891.1 MGP_CASTEiJ_G0023400.1 mouse_genomes_project 18 21239360 21340970 + MGP_CASTEiJ_P0048891 Mapre2 protein_coding protein_coding MGP_CASTEiJ_T0048892.1 MGP_CASTEiJ_G0023400.1 mouse_genomes_project 18 21240692 21374940 + MGP_CASTEiJ_P0048892 Mapre2 protein_coding protein_coding MGP_CASTEiJ_T0048893.1 MGP_CASTEiJ_G0023400.1 mouse_genomes_project 18 21240715 21277375 + Mapre2 protein_coding processed_transcript MGP_CASTEiJ_T0048894.1 MGP_CASTEiJ_G0023400.1 mouse_genomes_project 18 21283318 21374945 + MGP_CASTEiJ_P0048894 Mapre2 protein_coding protein_coding MGP_CASTEiJ_T0048895.1 MGP_CASTEiJ_G0023400.1 mouse_genomes_project 18 21283374 21313972 + Mapre2 protein_coding retained_intron MGP_CASTEiJ_T0048896.1 MGP_CASTEiJ_G0023400.1 mouse_genomes_project 18 21283457 21373489 + MGP_CASTEiJ_P0048896 Mapre2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0003706.1 MGP_CASTEiJ_G0003336.1 mouse_genomes_project 18 63266702 63399699 - St8sia3os antisense antisense MGP_CASTEiJ_T0003707.1 MGP_CASTEiJ_G0003336.1 mouse_genomes_project 18 63314406 63399699 - St8sia3os antisense antisense MGP_CASTEiJ_T0003708.1 MGP_CASTEiJ_G0003336.1 mouse_genomes_project 18 63391285 63399690 - St8sia3os antisense antisense MGP_CASTEiJ_T0003709.1 MGP_CASTEiJ_G0003336.1 mouse_genomes_project 18 63397994 63399676 - St8sia3os antisense antisense MGP_CASTEiJ_T0049036.1 MGP_CASTEiJ_G0023462.1 mouse_genomes_project 18 32925462 32955653 - MGP_CASTEiJ_P0049036 Etf1 protein_coding protein_coding MGP_CASTEiJ_T0049037.1 MGP_CASTEiJ_G0023462.1 mouse_genomes_project 18 32955479 32955587 - MGP_CASTEiJ_P0049037 Etf1 protein_coding protein_coding MGP_CASTEiJ_T0049206.1 MGP_CASTEiJ_G0023532.1 mouse_genomes_project 18 35628145 35630946 + MGP_CASTEiJ_P0049206 Pcdhb15 protein_coding protein_coding MGP_CASTEiJ_T0006825.1 MGP_CASTEiJ_G0005629.1 mouse_genomes_project 18 14113174 14119557 + Gm15328 lincRNA lincRNA MGP_CASTEiJ_T0049186.1 MGP_CASTEiJ_G0023515.1 mouse_genomes_project 18 35214053 35356123 + MGP_CASTEiJ_P0049186 Pcdha12 protein_coding protein_coding MGP_CASTEiJ_T0049042.1 MGP_CASTEiJ_G0023464.1 mouse_genomes_project 18 33173619 33316186 + MGP_CASTEiJ_P0049042 Ctnna1 protein_coding protein_coding MGP_CASTEiJ_T0049043.1 MGP_CASTEiJ_G0023464.1 mouse_genomes_project 18 33234495 33315368 + MGP_CASTEiJ_P0049043 Ctnna1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048762.1 MGP_CASTEiJ_G0023354.1 mouse_genomes_project 18 7497158 7507644 + MGP_CASTEiJ_P0048762 Snrpd1 protein_coding protein_coding MGP_CASTEiJ_T0048749.1 MGP_CASTEiJ_G0023351.1 mouse_genomes_project 18 6928074 7048875 - MGP_CASTEiJ_P0048749 Rock1 protein_coding protein_coding MGP_CASTEiJ_T0099572.1 MGP_CASTEiJ_G0036485.1 mouse_genomes_project 18 50183293 50183418 - Gm25785 snRNA snRNA MGP_CASTEiJ_T0050070.1 MGP_CASTEiJ_G0023820.1 mouse_genomes_project 18 86739763 86857316 + MGP_CASTEiJ_P0050070 Neto1 protein_coding protein_coding MGP_CASTEiJ_T0099046.1 MGP_CASTEiJ_G0035961.1 mouse_genomes_project 18 81097505 81106467 - Gm27238 sense_overlapping sense_overlapping MGP_CASTEiJ_T0099591.1 MGP_CASTEiJ_G0036504.1 mouse_genomes_project 18 90794218 90794282 + Gm23859 snRNA snRNA MGP_CASTEiJ_T0049383.1 MGP_CASTEiJ_G0023602.1 mouse_genomes_project 18 42569962 42573353 - MGP_CASTEiJ_P0049383 Gm10267 protein_coding protein_coding MGP_CASTEiJ_T0049384.1 MGP_CASTEiJ_G0023602.1 mouse_genomes_project 18 42569971 42572765 - MGP_CASTEiJ_P0049384 Gm10267 protein_coding protein_coding MGP_CASTEiJ_T0050058.1 MGP_CASTEiJ_G0023816.1 mouse_genomes_project 18 85032644 85048870 + MGP_CASTEiJ_P0050058 Fam69c protein_coding protein_coding MGP_CASTEiJ_T0050059.1 MGP_CASTEiJ_G0023816.1 mouse_genomes_project 18 85032867 85059639 + MGP_CASTEiJ_P0050059 Fam69c protein_coding protein_coding MGP_CASTEiJ_T0050060.1 MGP_CASTEiJ_G0023816.1 mouse_genomes_project 18 85032902 85058596 + Fam69c protein_coding processed_transcript MGP_CASTEiJ_T0050061.1 MGP_CASTEiJ_G0023816.1 mouse_genomes_project 18 85033508 85048647 + Fam69c protein_coding processed_transcript MGP_CASTEiJ_T0049377.1 MGP_CASTEiJ_G0023598.1 mouse_genomes_project 18 42360509 42422587 + MGP_CASTEiJ_P0049377 Spink5 protein_coding protein_coding MGP_CASTEiJ_T0049378.1 MGP_CASTEiJ_G0023598.1 mouse_genomes_project 18 42360515 42415152 + MGP_CASTEiJ_P0049378 Spink5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049154.1 MGP_CASTEiJ_G0023499.1 mouse_genomes_project 18 34975393 34991524 - MGP_CASTEiJ_P0049154 Hars protein_coding protein_coding MGP_CASTEiJ_T0049038.1 MGP_CASTEiJ_G0023463.1 mouse_genomes_project 18 32960854 32977763 - MGP_CASTEiJ_P0049038 Hspa9 protein_coding protein_coding MGP_CASTEiJ_T0049039.1 MGP_CASTEiJ_G0023463.1 mouse_genomes_project 18 32961707 32962751 - Hspa9 protein_coding retained_intron MGP_CASTEiJ_T0049040.1 MGP_CASTEiJ_G0023463.1 mouse_genomes_project 18 32962136 32964299 - Hspa9 protein_coding retained_intron MGP_CASTEiJ_T0049041.1 MGP_CASTEiJ_G0023463.1 mouse_genomes_project 18 32971573 32974952 - Hspa9 protein_coding retained_intron MGP_CASTEiJ_T0049173.1 MGP_CASTEiJ_G0023508.1 mouse_genomes_project 18 35163320 35356123 + MGP_CASTEiJ_P0049173 protein_coding protein_coding MGP_CASTEiJ_T0049174.1 MGP_CASTEiJ_G0023508.1 mouse_genomes_project 18 35163338 35355854 + MGP_CASTEiJ_P0049174 protein_coding protein_coding MGP_CASTEiJ_T0049175.1 MGP_CASTEiJ_G0023508.1 mouse_genomes_project 18 35163340 35355619 + MGP_CASTEiJ_P0049175 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049915.1 MGP_CASTEiJ_G0023775.1 mouse_genomes_project 18 76146437 76220680 + MGP_CASTEiJ_P0049915 Smad2 protein_coding protein_coding MGP_CASTEiJ_T0049916.1 MGP_CASTEiJ_G0023775.1 mouse_genomes_project 18 76146769 76215929 + MGP_CASTEiJ_P0049916 Smad2 protein_coding protein_coding MGP_CASTEiJ_T0049917.1 MGP_CASTEiJ_G0023775.1 mouse_genomes_project 18 76147114 76207499 + MGP_CASTEiJ_P0049917 Smad2 protein_coding protein_coding MGP_CASTEiJ_T0049918.1 MGP_CASTEiJ_G0023775.1 mouse_genomes_project 18 76169156 76213835 + MGP_CASTEiJ_P0049918 Smad2 protein_coding protein_coding MGP_CASTEiJ_T0049919.1 MGP_CASTEiJ_G0023775.1 mouse_genomes_project 18 76169156 76208886 + MGP_CASTEiJ_P0049919 Smad2 protein_coding protein_coding MGP_CASTEiJ_T0012933.1 MGP_CASTEiJ_G0011096.1 mouse_genomes_project 18 23390780 23391557 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100802.1 MGP_CASTEiJ_G0037715.1 mouse_genomes_project 18 45412323 45412468 - Gm22791 snoRNA snoRNA MGP_CASTEiJ_T0049146.1 MGP_CASTEiJ_G0023494.1 mouse_genomes_project 18 34943124 34950217 + MGP_CASTEiJ_P0049146 Tmco6 protein_coding protein_coding MGP_CASTEiJ_T0049772.1 MGP_CASTEiJ_G0023745.1 mouse_genomes_project 18 68449591 68455994 - MGP_CASTEiJ_P0049772 4930546C10Rik protein_coding protein_coding MGP_CASTEiJ_T0009959.1 MGP_CASTEiJ_G0008147.1 mouse_genomes_project 18 6723917 6724000 - Gm23637 miRNA miRNA MGP_CASTEiJ_T0102191.1 MGP_CASTEiJ_G0038916.1 mouse_genomes_project 18 35207776 35208563 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0049363.1 MGP_CASTEiJ_G0023593.1 mouse_genomes_project 18 41699208 41833365 - MGP_CASTEiJ_P0049363 Dpysl3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049364.1 MGP_CASTEiJ_G0023593.1 mouse_genomes_project 18 41709801 41833273 - MGP_CASTEiJ_P0049364 Dpysl3 protein_coding protein_coding MGP_CASTEiJ_T0049365.1 MGP_CASTEiJ_G0023593.1 mouse_genomes_project 18 41711542 41712858 - Dpysl3 protein_coding processed_transcript MGP_CASTEiJ_T0049366.1 MGP_CASTEiJ_G0023593.1 mouse_genomes_project 18 41713054 41757060 - MGP_CASTEiJ_P0049366 Dpysl3 protein_coding protein_coding MGP_CASTEiJ_T0049367.1 MGP_CASTEiJ_G0023593.1 mouse_genomes_project 18 41713115 41779516 - MGP_CASTEiJ_P0049367 Dpysl3 protein_coding protein_coding MGP_CASTEiJ_T0049368.1 MGP_CASTEiJ_G0023593.1 mouse_genomes_project 18 41719217 41730987 - MGP_CASTEiJ_P0049368 Dpysl3 protein_coding protein_coding MGP_CASTEiJ_T0049369.1 MGP_CASTEiJ_G0023593.1 mouse_genomes_project 18 41722406 41730589 - MGP_CASTEiJ_P0049369 Dpysl3 protein_coding protein_coding MGP_CASTEiJ_T0049399.1 MGP_CASTEiJ_G0023610.1 mouse_genomes_project 18 43241938 43310316 + MGP_CASTEiJ_P0049399 Ythdc2 protein_coding protein_coding MGP_CASTEiJ_T0049400.1 MGP_CASTEiJ_G0023610.1 mouse_genomes_project 18 43242775 43304446 + MGP_CASTEiJ_P0049400 Ythdc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049401.1 MGP_CASTEiJ_G0023610.1 mouse_genomes_project 18 43261980 43263313 + Ythdc2 protein_coding retained_intron MGP_CASTEiJ_T0049402.1 MGP_CASTEiJ_G0023610.1 mouse_genomes_project 18 43268818 43310323 + MGP_CASTEiJ_P0049402 Ythdc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049403.1 MGP_CASTEiJ_G0023610.1 mouse_genomes_project 18 43269008 43269516 + Ythdc2 protein_coding retained_intron MGP_CASTEiJ_T0006871.1 MGP_CASTEiJ_G0005663.1 mouse_genomes_project 18 83329016 83330357 - 1700095A13Rik lincRNA lincRNA MGP_CASTEiJ_T0016903.1 MGP_CASTEiJ_G0014683.1 mouse_genomes_project 18 75205356 75207138 - Gm20544 processed_transcript processed_transcript MGP_CASTEiJ_T0000970.1 MGP_CASTEiJ_G0000906.1 mouse_genomes_project 18 54309161 54310153 - TEC TEC MGP_CASTEiJ_T0011479.1 MGP_CASTEiJ_G0009658.1 mouse_genomes_project 18 35892308 35977831 + MGP_CASTEiJ_P0011479 Pcdhgb8 polymorphic_pseudogene polymorphic_pseudogene MGP_CASTEiJ_T0049503.1 MGP_CASTEiJ_G0023648.1 mouse_genomes_project 18 55369217 55389559 - Aldh7a1 protein_coding processed_transcript MGP_CASTEiJ_T0049504.1 MGP_CASTEiJ_G0023648.1 mouse_genomes_project 18 55387448 55443956 - MGP_CASTEiJ_P0049504 Aldh7a1 protein_coding protein_coding MGP_CASTEiJ_T0049505.1 MGP_CASTEiJ_G0023648.1 mouse_genomes_project 18 55389314 55429672 - MGP_CASTEiJ_P0049505 Aldh7a1 protein_coding protein_coding MGP_CASTEiJ_T0049506.1 MGP_CASTEiJ_G0023648.1 mouse_genomes_project 18 55389453 55429653 - MGP_CASTEiJ_P0049506 Aldh7a1 protein_coding protein_coding MGP_CASTEiJ_T0049507.1 MGP_CASTEiJ_G0023648.1 mouse_genomes_project 18 55389459 55429562 - MGP_CASTEiJ_P0049507 Aldh7a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049508.1 MGP_CASTEiJ_G0023648.1 mouse_genomes_project 18 55396309 55401359 - Aldh7a1 protein_coding retained_intron MGP_CASTEiJ_T0049509.1 MGP_CASTEiJ_G0023648.1 mouse_genomes_project 18 55400989 55429570 - MGP_CASTEiJ_P0049509 Aldh7a1 protein_coding protein_coding MGP_CASTEiJ_T0049510.1 MGP_CASTEiJ_G0023648.1 mouse_genomes_project 18 55412769 55426748 - Aldh7a1 protein_coding retained_intron MGP_CASTEiJ_T0049511.1 MGP_CASTEiJ_G0023648.1 mouse_genomes_project 18 55417611 55429541 - MGP_CASTEiJ_P0049511 Aldh7a1 protein_coding protein_coding MGP_CASTEiJ_T0049944.1 MGP_CASTEiJ_G0023779.1 mouse_genomes_project 18 76970928 77071621 + MGP_CASTEiJ_P0049944 Pias2 protein_coding protein_coding MGP_CASTEiJ_T0049945.1 MGP_CASTEiJ_G0023779.1 mouse_genomes_project 18 76974713 77071621 + MGP_CASTEiJ_P0049945 Pias2 protein_coding protein_coding MGP_CASTEiJ_T0049946.1 MGP_CASTEiJ_G0023779.1 mouse_genomes_project 18 76974713 77062793 + MGP_CASTEiJ_P0049946 Pias2 protein_coding protein_coding MGP_CASTEiJ_T0049970.1 MGP_CASTEiJ_G0023787.1 mouse_genomes_project 18 77801830 77910244 + MGP_CASTEiJ_P0049970 Pstpip2 protein_coding protein_coding MGP_CASTEiJ_T0011133.1 MGP_CASTEiJ_G0009321.1 mouse_genomes_project 18 64660540 64660855 + Gm22567 misc_RNA misc_RNA MGP_CASTEiJ_T0049168.1 MGP_CASTEiJ_G0023505.1 mouse_genomes_project 18 35146901 35356123 + MGP_CASTEiJ_P0049168 Pcdha4 protein_coding protein_coding MGP_CASTEiJ_T0049169.1 MGP_CASTEiJ_G0023505.1 mouse_genomes_project 18 35146911 35150564 + Pcdha4 protein_coding retained_intron MGP_CASTEiJ_T0049170.1 MGP_CASTEiJ_G0023505.1 mouse_genomes_project 18 35146928 35356127 + MGP_CASTEiJ_P0049170 Pcdha4 protein_coding protein_coding MGP_CASTEiJ_T0012918.1 MGP_CASTEiJ_G0011081.1 mouse_genomes_project 18 3271972 3272281 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049404.1 MGP_CASTEiJ_G0023611.1 mouse_genomes_project 18 43655970 43678698 + Kcnn2 protein_coding processed_transcript MGP_CASTEiJ_T0049405.1 MGP_CASTEiJ_G0023611.1 mouse_genomes_project 18 43656115 44067767 + MGP_CASTEiJ_P0049405 Kcnn2 protein_coding protein_coding MGP_CASTEiJ_T0049406.1 MGP_CASTEiJ_G0023611.1 mouse_genomes_project 18 43656115 44067908 + MGP_CASTEiJ_P0049406 Kcnn2 protein_coding protein_coding MGP_CASTEiJ_T0049407.1 MGP_CASTEiJ_G0023611.1 mouse_genomes_project 18 43935335 44065792 + MGP_CASTEiJ_P0049407 Kcnn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049408.1 MGP_CASTEiJ_G0023611.1 mouse_genomes_project 18 43935369 44051336 + Kcnn2 protein_coding retained_intron MGP_CASTEiJ_T0049409.1 MGP_CASTEiJ_G0023611.1 mouse_genomes_project 18 43935711 43970290 + Kcnn2 protein_coding retained_intron MGP_CASTEiJ_T0049410.1 MGP_CASTEiJ_G0023611.1 mouse_genomes_project 18 43936054 44057180 + Kcnn2 protein_coding processed_transcript MGP_CASTEiJ_T0049411.1 MGP_CASTEiJ_G0023611.1 mouse_genomes_project 18 43936054 44067766 + MGP_CASTEiJ_P0049411 Kcnn2 protein_coding protein_coding MGP_CASTEiJ_T0000963.1 MGP_CASTEiJ_G0000899.1 mouse_genomes_project 18 5837512 5839104 + TEC TEC MGP_CASTEiJ_T0049215.1 MGP_CASTEiJ_G0023540.1 mouse_genomes_project 18 35762336 35763705 - MGP_CASTEiJ_P0049215 Slc25a2 protein_coding protein_coding MGP_CASTEiJ_T0049751.1 MGP_CASTEiJ_G0023736.1 mouse_genomes_project 18 67067583 67135216 - MGP_CASTEiJ_P0049751 Ptpn2 protein_coding protein_coding MGP_CASTEiJ_T0049752.1 MGP_CASTEiJ_G0023736.1 mouse_genomes_project 18 67067584 67135231 - MGP_CASTEiJ_P0049752 Ptpn2 protein_coding protein_coding MGP_CASTEiJ_T0049753.1 MGP_CASTEiJ_G0023736.1 mouse_genomes_project 18 67073266 67135238 - MGP_CASTEiJ_P0049753 Ptpn2 protein_coding protein_coding MGP_CASTEiJ_T0049754.1 MGP_CASTEiJ_G0023736.1 mouse_genomes_project 18 67077868 67095567 - Ptpn2 protein_coding processed_transcript MGP_CASTEiJ_T0048920.1 MGP_CASTEiJ_G0023414.1 mouse_genomes_project 18 22682670 22727327 - MGP_CASTEiJ_P0048920 Tpgs2 protein_coding protein_coding MGP_CASTEiJ_T0048921.1 MGP_CASTEiJ_G0023414.1 mouse_genomes_project 18 22692106 22727640 - MGP_CASTEiJ_P0048921 Tpgs2 protein_coding protein_coding MGP_CASTEiJ_T0009989.1 MGP_CASTEiJ_G0008177.1 mouse_genomes_project 18 60642060 60642123 - Mir143 miRNA miRNA MGP_CASTEiJ_T0006863.1 MGP_CASTEiJ_G0005656.1 mouse_genomes_project 18 73751134 73753312 + D730045A05Rik lincRNA lincRNA MGP_CASTEiJ_T0049537.1 MGP_CASTEiJ_G0023659.1 mouse_genomes_project 18 56948130 57162417 - MGP_CASTEiJ_P0049537 Fbn2 protein_coding protein_coding MGP_CASTEiJ_T0049538.1 MGP_CASTEiJ_G0023659.1 mouse_genomes_project 18 56949447 57162444 - MGP_CASTEiJ_P0049538 Fbn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049638.1 MGP_CASTEiJ_G0023693.1 mouse_genomes_project 18 60801175 60924095 - MGP_CASTEiJ_P0049638 Ablim3 protein_coding protein_coding MGP_CASTEiJ_T0049639.1 MGP_CASTEiJ_G0023693.1 mouse_genomes_project 18 60801175 60924123 - MGP_CASTEiJ_P0049639 Ablim3 protein_coding protein_coding MGP_CASTEiJ_T0003710.1 MGP_CASTEiJ_G0003337.1 mouse_genomes_project 18 69526711 69555044 - 1700061H18Rik antisense antisense MGP_CASTEiJ_T0003711.1 MGP_CASTEiJ_G0003337.1 mouse_genomes_project 18 69530329 69555031 - 1700061H18Rik antisense antisense MGP_CASTEiJ_T0012920.1 MGP_CASTEiJ_G0011083.1 mouse_genomes_project 18 4845581 4846314 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100812.1 MGP_CASTEiJ_G0037725.1 mouse_genomes_project 18 74793369 74793434 + Gm26202 snoRNA snoRNA MGP_CASTEiJ_T0098548.1 MGP_CASTEiJ_G0035479.1 mouse_genomes_project 18 17174795 17174893 + Gm24238 rRNA rRNA MGP_CASTEiJ_T0049111.1 MGP_CASTEiJ_G0023484.1 mouse_genomes_project 18 34515451 34538529 + MGP_CASTEiJ_P0049111 Cystm1 protein_coding protein_coding MGP_CASTEiJ_T0049112.1 MGP_CASTEiJ_G0023484.1 mouse_genomes_project 18 34520387 34575731 + MGP_CASTEiJ_P0049112 Cystm1 protein_coding protein_coding MGP_CASTEiJ_T0049113.1 MGP_CASTEiJ_G0023484.1 mouse_genomes_project 18 34520453 34540063 + Cystm1 protein_coding retained_intron MGP_CASTEiJ_T0049114.1 MGP_CASTEiJ_G0023484.1 mouse_genomes_project 18 34520464 34566336 + MGP_CASTEiJ_P0049114 Cystm1 protein_coding protein_coding MGP_CASTEiJ_T0049115.1 MGP_CASTEiJ_G0023484.1 mouse_genomes_project 18 34537589 34575291 + MGP_CASTEiJ_P0049115 Cystm1 protein_coding protein_coding MGP_CASTEiJ_T0048648.1 MGP_CASTEiJ_G0023328.1 mouse_genomes_project 18 1130497 1153639 - MGP_CASTEiJ_P0048648 Map3k8 protein_coding protein_coding MGP_CASTEiJ_T0048649.1 MGP_CASTEiJ_G0023328.1 mouse_genomes_project 18 1130510 1153643 - MGP_CASTEiJ_P0048649 Map3k8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048650.1 MGP_CASTEiJ_G0023328.1 mouse_genomes_project 18 1130511 1135514 - Map3k8 protein_coding processed_transcript MGP_CASTEiJ_T0048651.1 MGP_CASTEiJ_G0023328.1 mouse_genomes_project 18 1133066 1134270 - Map3k8 protein_coding retained_intron MGP_CASTEiJ_T0048652.1 MGP_CASTEiJ_G0023328.1 mouse_genomes_project 18 1146721 1153701 - Map3k8 protein_coding retained_intron MGP_CASTEiJ_T0098716.1 MGP_CASTEiJ_G0035647.1 mouse_genomes_project 18 24537717 24537945 - Gm26106 ribozyme ribozyme MGP_CASTEiJ_T0049283.1 MGP_CASTEiJ_G0023567.1 mouse_genomes_project 18 36341386 36369986 - MGP_CASTEiJ_P0049283 Pcdh1 protein_coding protein_coding MGP_CASTEiJ_T0049284.1 MGP_CASTEiJ_G0023567.1 mouse_genomes_project 18 36346312 36360606 - MGP_CASTEiJ_P0049284 Pcdh1 protein_coding protein_coding MGP_CASTEiJ_T0049285.1 MGP_CASTEiJ_G0023567.1 mouse_genomes_project 18 36354136 36369910 - MGP_CASTEiJ_P0049285 Pcdh1 protein_coding protein_coding MGP_CASTEiJ_T0049286.1 MGP_CASTEiJ_G0023567.1 mouse_genomes_project 18 36354136 36367703 - MGP_CASTEiJ_P0049286 Pcdh1 protein_coding protein_coding MGP_CASTEiJ_T0049287.1 MGP_CASTEiJ_G0023567.1 mouse_genomes_project 18 36360886 36368495 - MGP_CASTEiJ_P0049287 Pcdh1 protein_coding protein_coding MGP_CASTEiJ_T0049288.1 MGP_CASTEiJ_G0023567.1 mouse_genomes_project 18 36360886 36361283 - MGP_CASTEiJ_P0049288 Pcdh1 protein_coding protein_coding MGP_CASTEiJ_T0049512.1 MGP_CASTEiJ_G0023649.1 mouse_genomes_project 18 55429786 55460355 + MGP_CASTEiJ_P0049512 Phax protein_coding protein_coding MGP_CASTEiJ_T0049513.1 MGP_CASTEiJ_G0023649.1 mouse_genomes_project 18 55429940 55453382 + MGP_CASTEiJ_P0049513 Phax protein_coding protein_coding MGP_CASTEiJ_T0049514.1 MGP_CASTEiJ_G0023649.1 mouse_genomes_project 18 55443822 55460878 + MGP_CASTEiJ_P0049514 Phax protein_coding protein_coding MGP_CASTEiJ_T0049352.1 MGP_CASTEiJ_G0023588.1 mouse_genomes_project 18 40706739 40709428 + MGP_CASTEiJ_P0049352 Pou4f3 protein_coding protein_coding MGP_CASTEiJ_T0049391.1 MGP_CASTEiJ_G0023608.1 mouse_genomes_project 18 42774944 42790484 + MGP_CASTEiJ_P0049391 Dcp2 protein_coding protein_coding MGP_CASTEiJ_T0049392.1 MGP_CASTEiJ_G0023608.1 mouse_genomes_project 18 42774969 42820391 + MGP_CASTEiJ_P0049392 Dcp2 protein_coding protein_coding MGP_CASTEiJ_T0049743.1 MGP_CASTEiJ_G0023728.1 mouse_genomes_project 18 66662281 66695567 + MGP_CASTEiJ_P0049743 Impa2 protein_coding protein_coding MGP_CASTEiJ_T0049914.1 MGP_CASTEiJ_G0023774.1 mouse_genomes_project 18 76039489 76049802 + MGP_CASTEiJ_P0049914 Zbtb7c protein_coding unknown_likely_coding MGP_CASTEiJ_T0049387.1 MGP_CASTEiJ_G0023605.1 mouse_genomes_project 18 42617656 42622325 + MGP_CASTEiJ_P0049387 Gm10542 protein_coding protein_coding MGP_CASTEiJ_T0006849.1 MGP_CASTEiJ_G0005646.1 mouse_genomes_project 18 53130405 53168593 + Redrum lincRNA lincRNA MGP_CASTEiJ_T0011131.1 MGP_CASTEiJ_G0009319.1 mouse_genomes_project 18 54815706 54816012 - Gm22484 misc_RNA misc_RNA MGP_CASTEiJ_T0049687.1 MGP_CASTEiJ_G0023713.1 mouse_genomes_project 18 64081080 64428358 + MGP_CASTEiJ_P0049687 Nedd4l protein_coding protein_coding MGP_CASTEiJ_T0049688.1 MGP_CASTEiJ_G0023713.1 mouse_genomes_project 18 64081343 64423730 + MGP_CASTEiJ_P0049688 Nedd4l protein_coding unknown_likely_coding MGP_CASTEiJ_T0049689.1 MGP_CASTEiJ_G0023713.1 mouse_genomes_project 18 64283941 64428353 + MGP_CASTEiJ_P0049689 Nedd4l protein_coding protein_coding MGP_CASTEiJ_T0049431.1 MGP_CASTEiJ_G0023625.1 mouse_genomes_project 18 45666493 45714423 - MGP_CASTEiJ_P0049431 Sema6a protein_coding protein_coding MGP_CASTEiJ_T0049432.1 MGP_CASTEiJ_G0023625.1 mouse_genomes_project 18 45677141 45805072 - MGP_CASTEiJ_P0049432 Sema6a protein_coding protein_coding MGP_CASTEiJ_T0049433.1 MGP_CASTEiJ_G0023625.1 mouse_genomes_project 18 45677142 45805110 - MGP_CASTEiJ_P0049433 Sema6a protein_coding protein_coding MGP_CASTEiJ_T0049434.1 MGP_CASTEiJ_G0023625.1 mouse_genomes_project 18 45677963 45804515 - MGP_CASTEiJ_P0049434 Sema6a protein_coding unknown_likely_coding MGP_CASTEiJ_T0049435.1 MGP_CASTEiJ_G0023625.1 mouse_genomes_project 18 45679349 45804687 - MGP_CASTEiJ_P0049435 Sema6a protein_coding protein_coding MGP_CASTEiJ_T0049436.1 MGP_CASTEiJ_G0023625.1 mouse_genomes_project 18 45679351 45804689 - MGP_CASTEiJ_P0049436 Sema6a protein_coding protein_coding MGP_CASTEiJ_T0049437.1 MGP_CASTEiJ_G0023625.1 mouse_genomes_project 18 45680271 45768226 - MGP_CASTEiJ_P0049437 Sema6a protein_coding protein_coding MGP_CASTEiJ_T0049438.1 MGP_CASTEiJ_G0023625.1 mouse_genomes_project 18 45708831 45805110 - Sema6a protein_coding retained_intron MGP_CASTEiJ_T0049439.1 MGP_CASTEiJ_G0023625.1 mouse_genomes_project 18 45708846 45805112 - Sema6a protein_coding retained_intron MGP_CASTEiJ_T0049440.1 MGP_CASTEiJ_G0023625.1 mouse_genomes_project 18 45723575 45768204 - MGP_CASTEiJ_P0049440 Sema6a protein_coding protein_coding MGP_CASTEiJ_T0049441.1 MGP_CASTEiJ_G0023625.1 mouse_genomes_project 18 45735420 45804509 - Sema6a protein_coding retained_intron MGP_CASTEiJ_T0049165.1 MGP_CASTEiJ_G0023503.1 mouse_genomes_project 18 35130572 35356123 + MGP_CASTEiJ_P0049165 Pcdha2 protein_coding protein_coding MGP_CASTEiJ_T0049166.1 MGP_CASTEiJ_G0023503.1 mouse_genomes_project 18 35130591 35355854 + MGP_CASTEiJ_P0049166 Pcdha2 protein_coding protein_coding MGP_CASTEiJ_T0049210.1 MGP_CASTEiJ_G0023536.1 mouse_genomes_project 18 35651649 35659206 + MGP_CASTEiJ_P0049210 Pcdhb19 protein_coding protein_coding MGP_CASTEiJ_T0006833.1 MGP_CASTEiJ_G0005634.1 mouse_genomes_project 18 30015508 30023129 + Gm26717 lincRNA lincRNA MGP_CASTEiJ_T0101560.1 MGP_CASTEiJ_G0038438.1 mouse_genomes_project 18 36495749 36500720 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101561.1 MGP_CASTEiJ_G0038438.1 mouse_genomes_project 18 36496080 36503593 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0049079.1 MGP_CASTEiJ_G0023472.1 mouse_genomes_project 18 33737440 33739525 - MGP_CASTEiJ_P0049079 Mzb1 protein_coding protein_coding MGP_CASTEiJ_T0049430.1 MGP_CASTEiJ_G0023624.1 mouse_genomes_project 18 45386035 45520337 + MGP_CASTEiJ_P0049430 Commd10 protein_coding protein_coding MGP_CASTEiJ_T0048864.1 MGP_CASTEiJ_G0023394.1 mouse_genomes_project 18 18953435 19070778 - MGP_CASTEiJ_P0048864 Klhl14 protein_coding protein_coding MGP_CASTEiJ_T0048865.1 MGP_CASTEiJ_G0023394.1 mouse_genomes_project 18 18953437 19073126 - MGP_CASTEiJ_P0048865 Klhl14 protein_coding protein_coding MGP_CASTEiJ_T0048866.1 MGP_CASTEiJ_G0023394.1 mouse_genomes_project 18 19038260 19072278 - MGP_CASTEiJ_P0048866 Klhl14 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012940.1 MGP_CASTEiJ_G0011103.1 mouse_genomes_project 18 35592769 35593606 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003699.1 MGP_CASTEiJ_G0003332.1 mouse_genomes_project 18 44065347 44290959 - antisense antisense MGP_CASTEiJ_T0003700.1 MGP_CASTEiJ_G0003332.1 mouse_genomes_project 18 44067015 44250095 - antisense antisense MGP_CASTEiJ_T0100817.1 MGP_CASTEiJ_G0037730.1 mouse_genomes_project 18 91005030 91005159 + Gm25418 snoRNA snoRNA MGP_CASTEiJ_T0099576.1 MGP_CASTEiJ_G0036489.1 mouse_genomes_project 18 60091897 60092003 - Gm26403 snRNA snRNA MGP_CASTEiJ_T0098551.1 MGP_CASTEiJ_G0035482.1 mouse_genomes_project 18 32632510 32632629 + n-R5s25 rRNA rRNA MGP_CASTEiJ_T0049379.1 MGP_CASTEiJ_G0023599.1 mouse_genomes_project 18 42429117 42433458 + MGP_CASTEiJ_P0049379 Spink14 protein_coding protein_coding MGP_CASTEiJ_T0049380.1 MGP_CASTEiJ_G0023599.1 mouse_genomes_project 18 42429943 42433458 + MGP_CASTEiJ_P0049380 Spink14 protein_coding protein_coding MGP_CASTEiJ_T0000967.1 MGP_CASTEiJ_G0000903.1 mouse_genomes_project 18 44606684 44607394 + TEC TEC MGP_CASTEiJ_T0006824.1 MGP_CASTEiJ_G0005628.1 mouse_genomes_project 18 8823353 8841823 - Gm6277 lincRNA lincRNA MGP_CASTEiJ_T0049648.1 MGP_CASTEiJ_G0023701.1 mouse_genomes_project 18 61669487 61683242 + Spink10 protein_coding processed_transcript MGP_CASTEiJ_T0049649.1 MGP_CASTEiJ_G0023701.1 mouse_genomes_project 18 61673945 61685392 + MGP_CASTEiJ_P0049649 Spink10 protein_coding protein_coding MGP_CASTEiJ_T0049650.1 MGP_CASTEiJ_G0023701.1 mouse_genomes_project 18 61674227 61676127 + Spink10 protein_coding processed_transcript MGP_CASTEiJ_T0049651.1 MGP_CASTEiJ_G0023701.1 mouse_genomes_project 18 61674281 61677255 + Spink10 protein_coding processed_transcript MGP_CASTEiJ_T0003686.1 MGP_CASTEiJ_G0003320.1 mouse_genomes_project 18 35202796 35214584 - Gm10545 antisense antisense MGP_CASTEiJ_T0049094.1 MGP_CASTEiJ_G0023478.1 mouse_genomes_project 18 33830088 33837091 - MGP_CASTEiJ_P0049094 Tmem173 protein_coding protein_coding MGP_CASTEiJ_T0011119.1 MGP_CASTEiJ_G0009307.1 mouse_genomes_project 18 18721410 18721520 + Gm24372 misc_RNA misc_RNA MGP_CASTEiJ_T0009985.1 MGP_CASTEiJ_G0008173.1 mouse_genomes_project 18 60069664 60069728 + Mir6983 miRNA miRNA MGP_CASTEiJ_T0049663.1 MGP_CASTEiJ_G0023705.1 mouse_genomes_project 18 62065254 62306762 - MGP_CASTEiJ_P0049663 Piezo2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049664.1 MGP_CASTEiJ_G0023705.1 mouse_genomes_project 18 62065258 62458505 - MGP_CASTEiJ_P0049664 Piezo2 protein_coding protein_coding MGP_CASTEiJ_T0049665.1 MGP_CASTEiJ_G0023705.1 mouse_genomes_project 18 62065261 62085821 - MGP_CASTEiJ_P0049665 Piezo2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049666.1 MGP_CASTEiJ_G0023705.1 mouse_genomes_project 18 62066548 62457683 - MGP_CASTEiJ_P0049666 Piezo2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049667.1 MGP_CASTEiJ_G0023705.1 mouse_genomes_project 18 62075321 62083461 - Piezo2 protein_coding retained_intron MGP_CASTEiJ_T0049668.1 MGP_CASTEiJ_G0023705.1 mouse_genomes_project 18 62076398 62089632 - Piezo2 protein_coding retained_intron MGP_CASTEiJ_T0049669.1 MGP_CASTEiJ_G0023705.1 mouse_genomes_project 18 62112528 62457774 - MGP_CASTEiJ_P0049669 Piezo2 protein_coding protein_coding MGP_CASTEiJ_T0049670.1 MGP_CASTEiJ_G0023705.1 mouse_genomes_project 18 62132404 62204559 - MGP_CASTEiJ_P0049670 Piezo2 protein_coding protein_coding MGP_CASTEiJ_T0049671.1 MGP_CASTEiJ_G0023705.1 mouse_genomes_project 18 62163237 62242953 - MGP_CASTEiJ_P0049671 Piezo2 protein_coding protein_coding MGP_CASTEiJ_T0049672.1 MGP_CASTEiJ_G0023705.1 mouse_genomes_project 18 62163287 62458505 - MGP_CASTEiJ_P0049672 Piezo2 protein_coding protein_coding MGP_CASTEiJ_T0049673.1 MGP_CASTEiJ_G0023705.1 mouse_genomes_project 18 62180176 62458491 - Piezo2 protein_coding retained_intron MGP_CASTEiJ_T0049840.1 MGP_CASTEiJ_G0023749.1 mouse_genomes_project 18 69828334 69833283 - MGP_CASTEiJ_P0049840 Dynap protein_coding protein_coding MGP_CASTEiJ_T0048750.1 MGP_CASTEiJ_G0023352.1 mouse_genomes_project 18 7192955 7374431 + Greb1l protein_coding retained_intron MGP_CASTEiJ_T0048751.1 MGP_CASTEiJ_G0023352.1 mouse_genomes_project 18 7192957 7435116 + MGP_CASTEiJ_P0048751 Greb1l protein_coding protein_coding MGP_CASTEiJ_T0048752.1 MGP_CASTEiJ_G0023352.1 mouse_genomes_project 18 7257475 7431799 + MGP_CASTEiJ_P0048752 Greb1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0048753.1 MGP_CASTEiJ_G0023352.1 mouse_genomes_project 18 7331382 7411621 + MGP_CASTEiJ_P0048753 Greb1l protein_coding protein_coding MGP_CASTEiJ_T0048754.1 MGP_CASTEiJ_G0023352.1 mouse_genomes_project 18 7381815 7387898 + Greb1l protein_coding retained_intron MGP_CASTEiJ_T0048755.1 MGP_CASTEiJ_G0023352.1 mouse_genomes_project 18 7383116 7425925 + MGP_CASTEiJ_P0048755 Greb1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048756.1 MGP_CASTEiJ_G0023352.1 mouse_genomes_project 18 7426006 7431062 + Greb1l protein_coding processed_transcript MGP_CASTEiJ_T0099580.1 MGP_CASTEiJ_G0036493.1 mouse_genomes_project 18 63007936 63008011 - Gm24384 snRNA snRNA MGP_CASTEiJ_T0049773.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68869965 69105147 + MGP_CASTEiJ_P0049773 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049774.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68870755 69237173 + MGP_CASTEiJ_P0049774 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049775.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68871098 69241914 + MGP_CASTEiJ_P0049775 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049776.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68871101 69234674 + MGP_CASTEiJ_P0049776 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049777.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68871138 69234562 + MGP_CASTEiJ_P0049777 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049778.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68872330 69234688 + MGP_CASTEiJ_P0049778 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049779.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68872332 69240803 + MGP_CASTEiJ_P0049779 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049780.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68872332 69237354 + MGP_CASTEiJ_P0049780 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049781.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68872360 69234496 + MGP_CASTEiJ_P0049781 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049782.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68872362 69183299 + MGP_CASTEiJ_P0049782 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049783.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68872372 69024177 + Tcf4 protein_coding processed_transcript MGP_CASTEiJ_T0049784.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68872462 69234496 + MGP_CASTEiJ_P0049784 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049785.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68872784 69180077 + MGP_CASTEiJ_P0049785 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049786.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68872986 69234523 + MGP_CASTEiJ_P0049786 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049787.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68874707 69105814 + MGP_CASTEiJ_P0049787 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049788.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68874707 69234496 + MGP_CASTEiJ_P0049788 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049789.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68874753 68884800 + Tcf4 protein_coding processed_transcript MGP_CASTEiJ_T0049790.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68875659 69105708 + MGP_CASTEiJ_P0049790 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049791.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68875670 69234736 + MGP_CASTEiJ_P0049791 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049792.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68875672 69105715 + MGP_CASTEiJ_P0049792 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049793.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68875982 69234746 + MGP_CASTEiJ_P0049793 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049794.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68876051 69198860 + Tcf4 protein_coding processed_transcript MGP_CASTEiJ_T0049795.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68876405 69189380 + MGP_CASTEiJ_P0049795 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049796.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 68948334 69234737 + MGP_CASTEiJ_P0049796 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049797.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69035724 69183347 + MGP_CASTEiJ_P0049797 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049798.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69036982 69234543 + MGP_CASTEiJ_P0049798 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049799.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69037121 69204107 + MGP_CASTEiJ_P0049799 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049800.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69037243 69198901 + MGP_CASTEiJ_P0049800 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049801.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69059165 69234552 + MGP_CASTEiJ_P0049801 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049802.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69059404 69189436 + MGP_CASTEiJ_P0049802 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049803.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69059452 69234496 + MGP_CASTEiJ_P0049803 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049804.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69059462 69234575 + MGP_CASTEiJ_P0049804 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049805.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69059507 69183384 + MGP_CASTEiJ_P0049805 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049806.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69060829 69189396 + MGP_CASTEiJ_P0049806 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049807.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69060967 69234419 + MGP_CASTEiJ_P0049807 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049808.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69061170 69204306 + MGP_CASTEiJ_P0049808 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049809.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69061193 69063956 + Tcf4 protein_coding retained_intron MGP_CASTEiJ_T0049810.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69061207 69105754 + Tcf4 protein_coding processed_transcript MGP_CASTEiJ_T0049811.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69061530 69234558 + MGP_CASTEiJ_P0049811 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049812.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69061671 69183346 + MGP_CASTEiJ_P0049812 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049813.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69061851 69180123 + Tcf4 protein_coding retained_intron MGP_CASTEiJ_T0049814.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69104070 69197663 + Tcf4 protein_coding processed_transcript MGP_CASTEiJ_T0049815.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69104398 69183425 + Tcf4 protein_coding processed_transcript MGP_CASTEiJ_T0049816.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69134170 69234742 + MGP_CASTEiJ_P0049816 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049817.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69134730 69204254 + MGP_CASTEiJ_P0049817 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049818.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69134771 69225416 + MGP_CASTEiJ_P0049818 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049819.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69134777 69234067 + MGP_CASTEiJ_P0049819 Tcf4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049820.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69134784 69237356 + MGP_CASTEiJ_P0049820 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049821.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69134785 69138808 + Tcf4 protein_coding retained_intron MGP_CASTEiJ_T0049822.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69134785 69180213 + Tcf4 protein_coding retained_intron MGP_CASTEiJ_T0049823.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69134802 69204223 + Tcf4 protein_coding processed_transcript MGP_CASTEiJ_T0049824.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69134941 69197687 + MGP_CASTEiJ_P0049824 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049825.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69135541 69204121 + MGP_CASTEiJ_P0049825 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049826.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69140924 69198848 + MGP_CASTEiJ_P0049826 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049827.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69154652 69234496 + MGP_CASTEiJ_P0049827 Tcf4 protein_coding protein_coding MGP_CASTEiJ_T0049828.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69203026 69206627 + Tcf4 protein_coding retained_intron MGP_CASTEiJ_T0049829.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69204179 69240766 + MGP_CASTEiJ_P0049829 Tcf4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049830.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69231040 69237356 + Tcf4 protein_coding retained_intron MGP_CASTEiJ_T0049831.1 MGP_CASTEiJ_G0023746.1 mouse_genomes_project 18 69233723 69234930 + Tcf4 protein_coding retained_intron MGP_CASTEiJ_T0100806.1 MGP_CASTEiJ_G0037719.1 mouse_genomes_project 18 62613887 62614031 + Gm22210 snoRNA snoRNA MGP_CASTEiJ_T0049205.1 MGP_CASTEiJ_G0023531.1 mouse_genomes_project 18 35606227 35616677 + MGP_CASTEiJ_P0049205 Pcdhb14 protein_coding protein_coding MGP_CASTEiJ_T0049695.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64842361 64958507 + MGP_CASTEiJ_P0049695 Zfp532 protein_coding protein_coding MGP_CASTEiJ_T0049696.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64842513 64885380 + MGP_CASTEiJ_P0049696 Zfp532 protein_coding protein_coding MGP_CASTEiJ_T0049697.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64843218 64885369 + MGP_CASTEiJ_P0049697 Zfp532 protein_coding protein_coding MGP_CASTEiJ_T0049698.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64843224 64884937 + MGP_CASTEiJ_P0049698 Zfp532 protein_coding protein_coding MGP_CASTEiJ_T0049699.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64843871 64887195 + MGP_CASTEiJ_P0049699 Zfp532 protein_coding protein_coding MGP_CASTEiJ_T0049700.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64844358 64885516 + MGP_CASTEiJ_P0049700 Zfp532 protein_coding protein_coding MGP_CASTEiJ_T0049701.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64844413 64884944 + MGP_CASTEiJ_P0049701 Zfp532 protein_coding protein_coding MGP_CASTEiJ_T0049702.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64844537 64958005 + MGP_CASTEiJ_P0049702 Zfp532 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049703.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64844643 64958004 + MGP_CASTEiJ_P0049703 Zfp532 protein_coding protein_coding MGP_CASTEiJ_T0049704.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64844729 64885143 + MGP_CASTEiJ_P0049704 Zfp532 protein_coding protein_coding MGP_CASTEiJ_T0049705.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64845053 64957998 + MGP_CASTEiJ_P0049705 Zfp532 protein_coding protein_coding MGP_CASTEiJ_T0049706.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64845520 64885109 + MGP_CASTEiJ_P0049706 Zfp532 protein_coding protein_coding MGP_CASTEiJ_T0049707.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64846032 64885054 + MGP_CASTEiJ_P0049707 Zfp532 protein_coding protein_coding MGP_CASTEiJ_T0049708.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64881319 64886787 + Zfp532 protein_coding retained_intron MGP_CASTEiJ_T0049709.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64884624 64956597 + MGP_CASTEiJ_P0049709 Zfp532 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049710.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64887100 64952544 + Zfp532 protein_coding retained_intron MGP_CASTEiJ_T0049711.1 MGP_CASTEiJ_G0023716.1 mouse_genomes_project 18 64909656 64954750 + Zfp532 protein_coding processed_transcript MGP_CASTEiJ_T0048862.1 MGP_CASTEiJ_G0023393.1 mouse_genomes_project 18 18545021 18719355 - MGP_CASTEiJ_P0048862 Garem protein_coding protein_coding MGP_CASTEiJ_T0048863.1 MGP_CASTEiJ_G0023393.1 mouse_genomes_project 18 18546728 18719048 - MGP_CASTEiJ_P0048863 Garem protein_coding unknown_likely_coding MGP_CASTEiJ_T0006836.1 MGP_CASTEiJ_G0005637.1 mouse_genomes_project 18 30808819 30834792 - 2310026I22Rik lincRNA lincRNA MGP_CASTEiJ_T0012943.1 MGP_CASTEiJ_G0011106.1 mouse_genomes_project 18 36979897 36980749 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049272.1 MGP_CASTEiJ_G0023565.1 mouse_genomes_project 18 36097135 36100130 - Fchsd1 protein_coding retained_intron MGP_CASTEiJ_T0049273.1 MGP_CASTEiJ_G0023565.1 mouse_genomes_project 18 36097138 36109419 - MGP_CASTEiJ_P0049273 Fchsd1 protein_coding protein_coding MGP_CASTEiJ_T0049274.1 MGP_CASTEiJ_G0023565.1 mouse_genomes_project 18 36102608 36103706 - Fchsd1 protein_coding retained_intron MGP_CASTEiJ_T0049275.1 MGP_CASTEiJ_G0023565.1 mouse_genomes_project 18 36105302 36109414 - MGP_CASTEiJ_P0049275 Fchsd1 protein_coding protein_coding MGP_CASTEiJ_T0049276.1 MGP_CASTEiJ_G0023565.1 mouse_genomes_project 18 36105340 36107395 - Fchsd1 protein_coding retained_intron MGP_CASTEiJ_T0049277.1 MGP_CASTEiJ_G0023565.1 mouse_genomes_project 18 36107263 36107697 - Fchsd1 protein_coding retained_intron MGP_CASTEiJ_T0049278.1 MGP_CASTEiJ_G0023565.1 mouse_genomes_project 18 36107284 36109414 - MGP_CASTEiJ_P0049278 Fchsd1 protein_coding protein_coding MGP_CASTEiJ_T0049279.1 MGP_CASTEiJ_G0023565.1 mouse_genomes_project 18 36107285 36109402 - Fchsd1 protein_coding retained_intron MGP_CASTEiJ_T0049280.1 MGP_CASTEiJ_G0023565.1 mouse_genomes_project 18 36107450 36109414 - MGP_CASTEiJ_P0049280 Fchsd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049281.1 MGP_CASTEiJ_G0023565.1 mouse_genomes_project 18 36107478 36109173 - Fchsd1 protein_coding retained_intron MGP_CASTEiJ_T0100794.1 MGP_CASTEiJ_G0037707.1 mouse_genomes_project 18 31694240 31694372 + Gm23639 snoRNA snoRNA MGP_CASTEiJ_T0099577.1 MGP_CASTEiJ_G0036490.1 mouse_genomes_project 18 60444286 60444387 - Gm25834 snRNA snRNA MGP_CASTEiJ_T0049620.1 MGP_CASTEiJ_G0023688.1 mouse_genomes_project 18 60537377 60575188 + MGP_CASTEiJ_P0049620 Csnk1a1 protein_coding protein_coding MGP_CASTEiJ_T0049621.1 MGP_CASTEiJ_G0023688.1 mouse_genomes_project 18 60537416 60573416 + MGP_CASTEiJ_P0049621 Csnk1a1 protein_coding protein_coding MGP_CASTEiJ_T0049622.1 MGP_CASTEiJ_G0023688.1 mouse_genomes_project 18 60537421 60567236 + MGP_CASTEiJ_P0049622 Csnk1a1 protein_coding protein_coding MGP_CASTEiJ_T0049623.1 MGP_CASTEiJ_G0023688.1 mouse_genomes_project 18 60537421 60570742 + MGP_CASTEiJ_P0049623 Csnk1a1 protein_coding protein_coding MGP_CASTEiJ_T0049624.1 MGP_CASTEiJ_G0023688.1 mouse_genomes_project 18 60537431 60567383 + MGP_CASTEiJ_P0049624 Csnk1a1 protein_coding protein_coding MGP_CASTEiJ_T0049625.1 MGP_CASTEiJ_G0023688.1 mouse_genomes_project 18 60537438 60540350 + Csnk1a1 protein_coding retained_intron MGP_CASTEiJ_T0049626.1 MGP_CASTEiJ_G0023688.1 mouse_genomes_project 18 60537442 60573294 + MGP_CASTEiJ_P0049626 Csnk1a1 protein_coding protein_coding MGP_CASTEiJ_T0049627.1 MGP_CASTEiJ_G0023688.1 mouse_genomes_project 18 60537791 60572644 + MGP_CASTEiJ_P0049627 Csnk1a1 protein_coding protein_coding MGP_CASTEiJ_T0049628.1 MGP_CASTEiJ_G0023688.1 mouse_genomes_project 18 60560674 60567238 + MGP_CASTEiJ_P0049628 Csnk1a1 protein_coding protein_coding MGP_CASTEiJ_T0049629.1 MGP_CASTEiJ_G0023688.1 mouse_genomes_project 18 60567964 60571610 + Csnk1a1 protein_coding processed_transcript MGP_CASTEiJ_T0011116.1 MGP_CASTEiJ_G0009304.1 mouse_genomes_project 18 13477250 13477600 - Gm24385 misc_RNA misc_RNA MGP_CASTEiJ_T0049631.1 MGP_CASTEiJ_G0023690.1 mouse_genomes_project 18 60692411 60703273 - MGP_CASTEiJ_P0049631 Pcyox1l protein_coding protein_coding MGP_CASTEiJ_T0049632.1 MGP_CASTEiJ_G0023690.1 mouse_genomes_project 18 60695056 60703251 - MGP_CASTEiJ_P0049632 Pcyox1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049633.1 MGP_CASTEiJ_G0023690.1 mouse_genomes_project 18 60698438 60703273 - Pcyox1l protein_coding retained_intron MGP_CASTEiJ_T0048824.1 MGP_CASTEiJ_G0023370.1 mouse_genomes_project 18 10107640 10125851 + MGP_CASTEiJ_P0048824 Hrh4 protein_coding protein_coding MGP_CASTEiJ_T0003696.1 MGP_CASTEiJ_G0003330.1 mouse_genomes_project 18 41285956 41289370 + 4933407I08Rik antisense antisense MGP_CASTEiJ_T0009994.1 MGP_CASTEiJ_G0008182.1 mouse_genomes_project 18 68527498 68527573 - Mir145b miRNA miRNA MGP_CASTEiJ_T0011115.1 MGP_CASTEiJ_G0009303.1 mouse_genomes_project 18 13273919 13274207 + Gm22389 misc_RNA misc_RNA MGP_CASTEiJ_T0000972.1 MGP_CASTEiJ_G0000908.1 mouse_genomes_project 18 64865712 64866977 + TEC TEC MGP_CASTEiJ_T0049770.1 MGP_CASTEiJ_G0023743.1 mouse_genomes_project 18 67798921 67801031 + MGP_CASTEiJ_P0049770 Mc5r protein_coding protein_coding MGP_CASTEiJ_T0049759.1 MGP_CASTEiJ_G0023740.1 mouse_genomes_project 18 67378753 67712216 + MGP_CASTEiJ_P0049759 Ldlrad4 protein_coding protein_coding MGP_CASTEiJ_T0049355.1 MGP_CASTEiJ_G0023590.1 mouse_genomes_project 18 40908481 40910108 - MGP_CASTEiJ_P0049355 Gpr151 protein_coding protein_coding MGP_CASTEiJ_T0003682.1 MGP_CASTEiJ_G0003316.1 mouse_genomes_project 18 33950368 33951078 - Gm29417 antisense antisense MGP_CASTEiJ_T0098746.1 MGP_CASTEiJ_G0035677.1 mouse_genomes_project 18 74542308 74542387 - Scarna17 scaRNA scaRNA MGP_CASTEiJ_T0012928.1 MGP_CASTEiJ_G0011091.1 mouse_genomes_project 18 12207003 12207450 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0050079.1 MGP_CASTEiJ_G0023825.1 mouse_genomes_project 18 89933867 89936197 - MGP_CASTEiJ_P0050079 Ccdc184 protein_coding protein_coding MGP_CASTEiJ_T0049539.1 MGP_CASTEiJ_G0023660.1 mouse_genomes_project 18 57518107 57580588 + MGP_CASTEiJ_P0049539 Slc27a6 protein_coding protein_coding MGP_CASTEiJ_T0049540.1 MGP_CASTEiJ_G0023660.1 mouse_genomes_project 18 57518204 57579851 + MGP_CASTEiJ_P0049540 Slc27a6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012936.1 MGP_CASTEiJ_G0011099.1 mouse_genomes_project 18 29904655 29904813 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048950.1 MGP_CASTEiJ_G0023426.1 mouse_genomes_project 18 29660045 29770619 + MGP_CASTEiJ_P0048950 Wdr33 protein_coding protein_coding MGP_CASTEiJ_T0048951.1 MGP_CASTEiJ_G0023426.1 mouse_genomes_project 18 29660045 29699403 + MGP_CASTEiJ_P0048951 Wdr33 protein_coding protein_coding MGP_CASTEiJ_T0049902.1 MGP_CASTEiJ_G0023767.1 mouse_genomes_project 18 74543114 74571256 + MGP_CASTEiJ_P0049902 Acaa2 protein_coding protein_coding MGP_CASTEiJ_T0049755.1 MGP_CASTEiJ_G0023737.1 mouse_genomes_project 18 67188662 67210788 + MGP_CASTEiJ_P0049755 Seh1l protein_coding protein_coding MGP_CASTEiJ_T0049756.1 MGP_CASTEiJ_G0023737.1 mouse_genomes_project 18 67188719 67210816 + MGP_CASTEiJ_P0049756 Seh1l protein_coding unknown_likely_coding MGP_CASTEiJ_T0009993.1 MGP_CASTEiJ_G0008181.1 mouse_genomes_project 18 68223410 68223512 + Mir6356 miRNA miRNA MGP_CASTEiJ_T0049212.1 MGP_CASTEiJ_G0023538.1 mouse_genomes_project 18 35670551 35676273 + MGP_CASTEiJ_P0049212 Pcdhb21 protein_coding protein_coding MGP_CASTEiJ_T0049265.1 MGP_CASTEiJ_G0023564.1 mouse_genomes_project 18 36094767 36098877 + MGP_CASTEiJ_P0049265 Rell2 protein_coding protein_coding MGP_CASTEiJ_T0049266.1 MGP_CASTEiJ_G0023564.1 mouse_genomes_project 18 36094783 36098250 + MGP_CASTEiJ_P0049266 Rell2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049267.1 MGP_CASTEiJ_G0023564.1 mouse_genomes_project 18 36094843 36098250 + MGP_CASTEiJ_P0049267 Rell2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049268.1 MGP_CASTEiJ_G0023564.1 mouse_genomes_project 18 36095292 36097383 + MGP_CASTEiJ_P0049268 Rell2 protein_coding protein_coding MGP_CASTEiJ_T0049269.1 MGP_CASTEiJ_G0023564.1 mouse_genomes_project 18 36095328 36098868 + MGP_CASTEiJ_P0049269 Rell2 protein_coding protein_coding MGP_CASTEiJ_T0049270.1 MGP_CASTEiJ_G0023564.1 mouse_genomes_project 18 36096397 36097744 + Rell2 protein_coding retained_intron MGP_CASTEiJ_T0049271.1 MGP_CASTEiJ_G0023564.1 mouse_genomes_project 18 36096438 36097874 + Rell2 protein_coding retained_intron MGP_CASTEiJ_T0049643.1 MGP_CASTEiJ_G0023697.1 mouse_genomes_project 18 61336813 61486861 + MGP_CASTEiJ_P0049643 Htr4 protein_coding protein_coding MGP_CASTEiJ_T0100797.1 MGP_CASTEiJ_G0037710.1 mouse_genomes_project 18 32966079 32966149 - Gm26109 snoRNA snoRNA MGP_CASTEiJ_T0006865.1 MGP_CASTEiJ_G0005658.1 mouse_genomes_project 18 75668852 75672646 + lincRNA lincRNA MGP_CASTEiJ_T0100803.1 MGP_CASTEiJ_G0037716.1 mouse_genomes_project 18 53860141 53860234 - Gm24183 snoRNA snoRNA MGP_CASTEiJ_T0049216.1 MGP_CASTEiJ_G0023541.1 mouse_genomes_project 18 35765460 35769183 - MGP_CASTEiJ_P0049216 Taf7 protein_coding protein_coding MGP_CASTEiJ_T0048738.1 MGP_CASTEiJ_G0023346.1 mouse_genomes_project 18 6516677 6520544 - MGP_CASTEiJ_P0048738 Cetn1 protein_coding protein_coding MGP_CASTEiJ_T0009960.1 MGP_CASTEiJ_G0008148.1 mouse_genomes_project 18 7234405 7234571 - Gm44409 miRNA miRNA MGP_CASTEiJ_T0003674.1 MGP_CASTEiJ_G0003311.1 mouse_genomes_project 18 9550078 9553305 - Gm29200 antisense antisense MGP_CASTEiJ_T0049302.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 36797853 36845455 + Arhgap26 protein_coding processed_transcript MGP_CASTEiJ_T0049303.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 36797920 36998991 + Arhgap26 protein_coding processed_transcript MGP_CASTEiJ_T0049304.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 36826983 36842466 + Arhgap26 protein_coding processed_transcript MGP_CASTEiJ_T0049305.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 36876388 36984148 + Arhgap26 protein_coding processed_transcript MGP_CASTEiJ_T0049306.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 36876388 37336019 + MGP_CASTEiJ_P0049306 Arhgap26 protein_coding protein_coding MGP_CASTEiJ_T0049314.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 37110029 37193527 + Arhgap26 protein_coding processed_transcript MGP_CASTEiJ_T0049315.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 37110288 37154270 + MGP_CASTEiJ_P0049315 Arhgap26 protein_coding protein_coding MGP_CASTEiJ_T0049316.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 37177401 37193189 + Arhgap26 protein_coding processed_transcript MGP_CASTEiJ_T0049317.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 37216873 37325518 + Arhgap26 protein_coding retained_intron MGP_CASTEiJ_T0049318.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 37216873 37619239 + MGP_CASTEiJ_P0049318 Arhgap26 protein_coding protein_coding MGP_CASTEiJ_T0049319.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 37217167 37549750 + MGP_CASTEiJ_P0049319 Arhgap26 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049320.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 37217204 37612489 + MGP_CASTEiJ_P0049320 Arhgap26 protein_coding protein_coding MGP_CASTEiJ_T0049321.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 37324667 37353807 + Arhgap26 protein_coding processed_transcript MGP_CASTEiJ_T0049322.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 37462581 37615468 + MGP_CASTEiJ_P0049322 Arhgap26 protein_coding protein_coding MGP_CASTEiJ_T0049323.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 37521682 37619239 + MGP_CASTEiJ_P0049323 Arhgap26 protein_coding protein_coding MGP_CASTEiJ_T0049324.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 37526582 37542429 + Arhgap26 protein_coding processed_transcript MGP_CASTEiJ_T0049325.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 37531912 37601180 + MGP_CASTEiJ_P0049325 Arhgap26 protein_coding protein_coding MGP_CASTEiJ_T0049326.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 37531912 37612456 + MGP_CASTEiJ_P0049326 Arhgap26 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049327.1 MGP_CASTEiJ_G0023574.1 mouse_genomes_project 18 37603956 37608429 + Arhgap26 protein_coding processed_transcript MGP_CASTEiJ_T0049222.1 MGP_CASTEiJ_G0023546.1 mouse_genomes_project 18 35811140 35977834 + MGP_CASTEiJ_P0049222 Pcdhga4 protein_coding protein_coding MGP_CASTEiJ_T0049223.1 MGP_CASTEiJ_G0023546.1 mouse_genomes_project 18 35812814 35813710 + MGP_CASTEiJ_P0049223 Pcdhga4 protein_coding protein_coding MGP_CASTEiJ_T0049905.1 MGP_CASTEiJ_G0023770.1 mouse_genomes_project 18 74798888 74805617 + MGP_CASTEiJ_P0049905 BC031181 protein_coding protein_coding MGP_CASTEiJ_T0100798.1 MGP_CASTEiJ_G0037711.1 mouse_genomes_project 18 33643186 33643327 + Mir1949 snoRNA snoRNA MGP_CASTEiJ_T0049882.1 MGP_CASTEiJ_G0023761.1 mouse_genomes_project 18 73805023 73805506 + MGP_CASTEiJ_P0049882 Gm9925 protein_coding protein_coding MGP_CASTEiJ_T0011137.1 MGP_CASTEiJ_G0009325.1 mouse_genomes_project 18 77813991 77814348 - Gm23954 misc_RNA misc_RNA MGP_CASTEiJ_T0049750.1 MGP_CASTEiJ_G0023735.1 mouse_genomes_project 18 67040953 67055453 + MGP_CASTEiJ_P0049750 Psmg2 protein_coding protein_coding MGP_CASTEiJ_T0000968.1 MGP_CASTEiJ_G0000904.1 mouse_genomes_project 18 53919125 53919337 + TEC TEC MGP_CASTEiJ_T0049920.1 MGP_CASTEiJ_G0023776.1 mouse_genomes_project 18 76824075 76838284 + MGP_CASTEiJ_P0049920 Ier3ip1 protein_coding protein_coding MGP_CASTEiJ_T0049921.1 MGP_CASTEiJ_G0023776.1 mouse_genomes_project 18 76824103 76838284 + Ier3ip1 protein_coding processed_transcript MGP_CASTEiJ_T0049922.1 MGP_CASTEiJ_G0023776.1 mouse_genomes_project 18 76824121 76836424 + Ier3ip1 protein_coding retained_intron MGP_CASTEiJ_T0048959.1 MGP_CASTEiJ_G0023433.1 mouse_genomes_project 18 29993048 30008453 - MGP_CASTEiJ_P0048959 Proc protein_coding protein_coding MGP_CASTEiJ_T0049616.1 MGP_CASTEiJ_G0023686.1 mouse_genomes_project 18 60261401 60373747 - MGP_CASTEiJ_P0049616 Ppargc1b protein_coding protein_coding MGP_CASTEiJ_T0049617.1 MGP_CASTEiJ_G0023686.1 mouse_genomes_project 18 60261768 60373716 - MGP_CASTEiJ_P0049617 Ppargc1b protein_coding protein_coding MGP_CASTEiJ_T0049618.1 MGP_CASTEiJ_G0023686.1 mouse_genomes_project 18 60361295 60373716 - Ppargc1b protein_coding processed_transcript MGP_CASTEiJ_T0049587.1 MGP_CASTEiJ_G0023676.1 mouse_genomes_project 18 59749160 59786533 - MGP_CASTEiJ_P0049587 Tcof1 protein_coding protein_coding MGP_CASTEiJ_T0049588.1 MGP_CASTEiJ_G0023676.1 mouse_genomes_project 18 59749160 59786491 - MGP_CASTEiJ_P0049588 Tcof1 protein_coding protein_coding MGP_CASTEiJ_T0049589.1 MGP_CASTEiJ_G0023676.1 mouse_genomes_project 18 59751388 59786521 - MGP_CASTEiJ_P0049589 Tcof1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049590.1 MGP_CASTEiJ_G0023676.1 mouse_genomes_project 18 59753380 59786480 - MGP_CASTEiJ_P0049590 Tcof1 protein_coding protein_coding MGP_CASTEiJ_T0049591.1 MGP_CASTEiJ_G0023676.1 mouse_genomes_project 18 59763379 59764335 - Tcof1 protein_coding retained_intron MGP_CASTEiJ_T0049592.1 MGP_CASTEiJ_G0023676.1 mouse_genomes_project 18 59775463 59786008 - MGP_CASTEiJ_P0049592 Tcof1 protein_coding protein_coding MGP_CASTEiJ_T0049118.1 MGP_CASTEiJ_G0023487.1 mouse_genomes_project 18 34708290 34723727 + MGP_CASTEiJ_P0049118 Slc4a9 protein_coding protein_coding MGP_CASTEiJ_T0049119.1 MGP_CASTEiJ_G0023487.1 mouse_genomes_project 18 34708290 34723727 + MGP_CASTEiJ_P0049119 Slc4a9 protein_coding protein_coding MGP_CASTEiJ_T0049120.1 MGP_CASTEiJ_G0023487.1 mouse_genomes_project 18 34708320 34739029 + MGP_CASTEiJ_P0049120 Slc4a9 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099581.1 MGP_CASTEiJ_G0036494.1 mouse_genomes_project 18 63892786 63892848 + Gm23016 snRNA snRNA MGP_CASTEiJ_T0011113.1 MGP_CASTEiJ_G0009301.1 mouse_genomes_project 18 649165 649488 + Gm24632 misc_RNA misc_RNA MGP_CASTEiJ_T0099559.1 MGP_CASTEiJ_G0036472.1 mouse_genomes_project 18 11815876 11816040 - Gm24924 snRNA snRNA MGP_CASTEiJ_T0049748.1 MGP_CASTEiJ_G0023733.1 mouse_genomes_project 18 66875345 67004542 - MGP_CASTEiJ_P0049748 Spire1 protein_coding protein_coding MGP_CASTEiJ_T0049535.1 MGP_CASTEiJ_G0023658.1 mouse_genomes_project 18 56816403 56886706 + MGP_CASTEiJ_P0049535 Slc12a2 protein_coding protein_coding MGP_CASTEiJ_T0049536.1 MGP_CASTEiJ_G0023658.1 mouse_genomes_project 18 56816495 56880350 + MGP_CASTEiJ_P0049536 Slc12a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012917.1 MGP_CASTEiJ_G0011080.1 mouse_genomes_project 18 2471442 2471815 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049261.1 MGP_CASTEiJ_G0023563.1 mouse_genomes_project 18 36075709 36085429 - Hdac3 protein_coding retained_intron MGP_CASTEiJ_T0049262.1 MGP_CASTEiJ_G0023563.1 mouse_genomes_project 18 36076842 36083938 - Hdac3 protein_coding retained_intron MGP_CASTEiJ_T0049263.1 MGP_CASTEiJ_G0023563.1 mouse_genomes_project 18 36076842 36094693 - MGP_CASTEiJ_P0049263 Hdac3 protein_coding protein_coding MGP_CASTEiJ_T0049264.1 MGP_CASTEiJ_G0023563.1 mouse_genomes_project 18 36076848 36094636 - Hdac3 protein_coding processed_transcript MGP_CASTEiJ_T0048853.1 MGP_CASTEiJ_G0023387.1 mouse_genomes_project 18 18037224 18046337 + MGP_CASTEiJ_P0048853 Ttr protein_coding protein_coding MGP_CASTEiJ_T0049208.1 MGP_CASTEiJ_G0023534.1 mouse_genomes_project 18 35639436 35644094 + MGP_CASTEiJ_P0049208 Pcdhb17 protein_coding protein_coding MGP_CASTEiJ_T0049004.1 MGP_CASTEiJ_G0023451.1 mouse_genomes_project 18 32543445 32562035 - MGP_CASTEiJ_P0049004 Nme5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049005.1 MGP_CASTEiJ_G0023451.1 mouse_genomes_project 18 32543447 32562050 - MGP_CASTEiJ_P0049005 Nme5 protein_coding protein_coding MGP_CASTEiJ_T0049006.1 MGP_CASTEiJ_G0023451.1 mouse_genomes_project 18 32543495 32562022 - MGP_CASTEiJ_P0049006 Nme5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049007.1 MGP_CASTEiJ_G0023451.1 mouse_genomes_project 18 32548950 32562018 - MGP_CASTEiJ_P0049007 Nme5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049282.1 MGP_CASTEiJ_G0023566.1 mouse_genomes_project 18 36112286 36138707 - MGP_CASTEiJ_P0049282 Arap3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048961.1 MGP_CASTEiJ_G0023435.1 mouse_genomes_project 18 30112824 30143350 + MGP_CASTEiJ_P0048961 Ercc3 protein_coding protein_coding MGP_CASTEiJ_T0048962.1 MGP_CASTEiJ_G0023435.1 mouse_genomes_project 18 30112878 30143350 + Ercc3 protein_coding retained_intron MGP_CASTEiJ_T0048963.1 MGP_CASTEiJ_G0023435.1 mouse_genomes_project 18 30130728 30143290 + Ercc3 protein_coding processed_transcript MGP_CASTEiJ_T0049227.1 MGP_CASTEiJ_G0023549.1 mouse_genomes_project 18 35834004 35977834 + MGP_CASTEiJ_P0049227 Pcdhga6 protein_coding protein_coding MGP_CASTEiJ_T0049947.1 MGP_CASTEiJ_G0023780.1 mouse_genomes_project 18 77113613 77114864 - MGP_CASTEiJ_P0049947 Gm7276 protein_coding protein_coding MGP_CASTEiJ_T0016881.1 MGP_CASTEiJ_G0014676.1 mouse_genomes_project 18 36367712 36390677 + 2010320O07Rik processed_transcript processed_transcript MGP_CASTEiJ_T0049541.1 MGP_CASTEiJ_G0023661.1 mouse_genomes_project 18 57632994 57715643 + MGP_CASTEiJ_P0049541 Isoc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049542.1 MGP_CASTEiJ_G0023661.1 mouse_genomes_project 18 57633086 57653933 + MGP_CASTEiJ_P0049542 Isoc1 protein_coding protein_coding MGP_CASTEiJ_T0006864.1 MGP_CASTEiJ_G0005657.1 mouse_genomes_project 18 75372134 75380501 + Gm10532 lincRNA lincRNA MGP_CASTEiJ_T0012931.1 MGP_CASTEiJ_G0011094.1 mouse_genomes_project 18 21767571 21769050 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049584.1 MGP_CASTEiJ_G0023675.1 mouse_genomes_project 18 59739231 59748052 + MGP_CASTEiJ_P0049584 Cd74 protein_coding protein_coding MGP_CASTEiJ_T0049585.1 MGP_CASTEiJ_G0023675.1 mouse_genomes_project 18 59739231 59748052 + MGP_CASTEiJ_P0049585 Cd74 protein_coding protein_coding MGP_CASTEiJ_T0049586.1 MGP_CASTEiJ_G0023675.1 mouse_genomes_project 18 59739239 59748052 + MGP_CASTEiJ_P0049586 Cd74 protein_coding protein_coding MGP_CASTEiJ_T0049200.1 MGP_CASTEiJ_G0023526.1 mouse_genomes_project 18 35554547 35559939 + MGP_CASTEiJ_P0049200 protein_coding protein_coding MGP_CASTEiJ_T0009968.1 MGP_CASTEiJ_G0008156.1 mouse_genomes_project 18 33643261 33643331 + Mir1949 miRNA miRNA MGP_CASTEiJ_T0003697.1 MGP_CASTEiJ_G0003331.1 mouse_genomes_project 18 43078924 43093354 + A930012L18Rik antisense antisense MGP_CASTEiJ_T0003698.1 MGP_CASTEiJ_G0003331.1 mouse_genomes_project 18 43079362 43089713 + A930012L18Rik antisense antisense MGP_CASTEiJ_T0049427.1 MGP_CASTEiJ_G0023622.1 mouse_genomes_project 18 45264526 45324728 + MGP_CASTEiJ_P0049427 Lvrn protein_coding protein_coding MGP_CASTEiJ_T0049428.1 MGP_CASTEiJ_G0023622.1 mouse_genomes_project 18 45264679 45353912 + MGP_CASTEiJ_P0049428 Lvrn protein_coding unknown_likely_coding MGP_CASTEiJ_T0100793.1 MGP_CASTEiJ_G0037706.1 mouse_genomes_project 18 30517402 30517539 - Gm25826 snoRNA snoRNA MGP_CASTEiJ_T0049556.1 MGP_CASTEiJ_G0023668.1 mouse_genomes_project 18 59392036 59420060 - MGP_CASTEiJ_P0049556 Smim3 protein_coding protein_coding MGP_CASTEiJ_T0049762.1 MGP_CASTEiJ_G0023742.1 mouse_genomes_project 18 67761977 67789791 + MGP_CASTEiJ_P0049762 Rnmt protein_coding protein_coding MGP_CASTEiJ_T0049763.1 MGP_CASTEiJ_G0023742.1 mouse_genomes_project 18 67762014 67770977 + MGP_CASTEiJ_P0049763 Rnmt protein_coding protein_coding MGP_CASTEiJ_T0049764.1 MGP_CASTEiJ_G0023742.1 mouse_genomes_project 18 67762020 67777314 + Rnmt protein_coding retained_intron MGP_CASTEiJ_T0049765.1 MGP_CASTEiJ_G0023742.1 mouse_genomes_project 18 67762022 67786848 + MGP_CASTEiJ_P0049765 Rnmt protein_coding protein_coding MGP_CASTEiJ_T0049766.1 MGP_CASTEiJ_G0023742.1 mouse_genomes_project 18 67762044 67773382 + MGP_CASTEiJ_P0049766 Rnmt protein_coding protein_coding MGP_CASTEiJ_T0049767.1 MGP_CASTEiJ_G0023742.1 mouse_genomes_project 18 67766546 67767749 + MGP_CASTEiJ_P0049767 Rnmt protein_coding protein_coding MGP_CASTEiJ_T0049768.1 MGP_CASTEiJ_G0023742.1 mouse_genomes_project 18 67780420 67782172 + Rnmt protein_coding retained_intron MGP_CASTEiJ_T0049769.1 MGP_CASTEiJ_G0023742.1 mouse_genomes_project 18 67781924 67789790 + Rnmt protein_coding processed_transcript MGP_CASTEiJ_T0049878.1 MGP_CASTEiJ_G0023760.1 mouse_genomes_project 18 73662872 73702459 - MGP_CASTEiJ_P0049878 Mapk4 protein_coding protein_coding MGP_CASTEiJ_T0049879.1 MGP_CASTEiJ_G0023760.1 mouse_genomes_project 18 73662876 73804314 - MGP_CASTEiJ_P0049879 Mapk4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049880.1 MGP_CASTEiJ_G0023760.1 mouse_genomes_project 18 73662876 73804851 - MGP_CASTEiJ_P0049880 Mapk4 protein_coding protein_coding MGP_CASTEiJ_T0049881.1 MGP_CASTEiJ_G0023760.1 mouse_genomes_project 18 73703245 73805281 - Mapk4 protein_coding processed_transcript MGP_CASTEiJ_T0048966.1 MGP_CASTEiJ_G0023437.1 mouse_genomes_project 18 30420417 30458110 - MGP_CASTEiJ_P0048966 Gypc protein_coding protein_coding MGP_CASTEiJ_T0048967.1 MGP_CASTEiJ_G0023437.1 mouse_genomes_project 18 30420420 30458056 - MGP_CASTEiJ_P0048967 Gypc protein_coding protein_coding MGP_CASTEiJ_T0048968.1 MGP_CASTEiJ_G0023437.1 mouse_genomes_project 18 30421887 30427584 - MGP_CASTEiJ_P0048968 Gypc protein_coding protein_coding MGP_CASTEiJ_T0099574.1 MGP_CASTEiJ_G0036487.1 mouse_genomes_project 18 53959679 53959759 + Gm22597 snRNA snRNA MGP_CASTEiJ_T0009972.1 MGP_CASTEiJ_G0008160.1 mouse_genomes_project 18 35990554 35990610 - Mir6979 miRNA miRNA MGP_CASTEiJ_T0049204.1 MGP_CASTEiJ_G0023530.1 mouse_genomes_project 18 35600984 35604759 + MGP_CASTEiJ_P0049204 Pcdhb13 protein_coding protein_coding MGP_CASTEiJ_T0006835.1 MGP_CASTEiJ_G0005636.1 mouse_genomes_project 18 30565029 30725945 - 4930455D15Rik lincRNA lincRNA MGP_CASTEiJ_T0048949.1 MGP_CASTEiJ_G0023425.1 mouse_genomes_project 18 29645197 29652662 + MGP_CASTEiJ_P0048949 Polr2d protein_coding protein_coding MGP_CASTEiJ_T0009969.1 MGP_CASTEiJ_G0008157.1 mouse_genomes_project 18 33645825 33645936 + miRNA miRNA MGP_CASTEiJ_T0098549.1 MGP_CASTEiJ_G0035480.1 mouse_genomes_project 18 22197139 22197254 - n-R5s23 rRNA rRNA MGP_CASTEiJ_T0050081.1 MGP_CASTEiJ_G0023826.1 mouse_genomes_project 18 91086720 91099975 + MGP_CASTEiJ_P0050081 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049499.1 MGP_CASTEiJ_G0023645.1 mouse_genomes_project 18 52564237 52657257 + MGP_CASTEiJ_P0049499 Csnk1g3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049500.1 MGP_CASTEiJ_G0023645.1 mouse_genomes_project 18 52564250 52657359 + MGP_CASTEiJ_P0049500 Csnk1g3 protein_coding protein_coding MGP_CASTEiJ_T0050022.1 MGP_CASTEiJ_G0023805.1 mouse_genomes_project 18 80845680 81050511 - MGP_CASTEiJ_P0050022 Atp9b protein_coding protein_coding MGP_CASTEiJ_T0050023.1 MGP_CASTEiJ_G0023805.1 mouse_genomes_project 18 80845921 81050392 - MGP_CASTEiJ_P0050023 Atp9b protein_coding unknown_likely_coding MGP_CASTEiJ_T0048903.1 MGP_CASTEiJ_G0023405.1 mouse_genomes_project 18 21594886 21614481 - MGP_CASTEiJ_P0048903 Ino80c protein_coding protein_coding MGP_CASTEiJ_T0048904.1 MGP_CASTEiJ_G0023405.1 mouse_genomes_project 18 21594892 21614633 - MGP_CASTEiJ_P0048904 Ino80c protein_coding protein_coding MGP_CASTEiJ_T0048905.1 MGP_CASTEiJ_G0023405.1 mouse_genomes_project 18 21596546 21614515 - MGP_CASTEiJ_P0048905 Ino80c protein_coding protein_coding MGP_CASTEiJ_T0099573.1 MGP_CASTEiJ_G0036486.1 mouse_genomes_project 18 50767324 50767431 - Gm22259 snRNA snRNA MGP_CASTEiJ_T0048789.1 MGP_CASTEiJ_G0023363.1 mouse_genomes_project 18 9223770 9272318 - MGP_CASTEiJ_P0048789 Npc1 protein_coding protein_coding MGP_CASTEiJ_T0048790.1 MGP_CASTEiJ_G0023363.1 mouse_genomes_project 18 9227976 9272188 - MGP_CASTEiJ_P0048790 Npc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048791.1 MGP_CASTEiJ_G0023363.1 mouse_genomes_project 18 9245895 9248070 - Npc1 protein_coding processed_transcript MGP_CASTEiJ_T0048792.1 MGP_CASTEiJ_G0023363.1 mouse_genomes_project 18 9253119 9272276 - Npc1 protein_coding retained_intron MGP_CASTEiJ_T0048793.1 MGP_CASTEiJ_G0023363.1 mouse_genomes_project 18 9253540 9272244 - Npc1 protein_coding retained_intron MGP_CASTEiJ_T0048794.1 MGP_CASTEiJ_G0023363.1 mouse_genomes_project 18 9257423 9259695 - Npc1 protein_coding processed_transcript MGP_CASTEiJ_T0048823.1 MGP_CASTEiJ_G0023369.1 mouse_genomes_project 18 10072107 10093682 + MGP_CASTEiJ_P0048823 Impact protein_coding protein_coding MGP_CASTEiJ_T0012925.1 MGP_CASTEiJ_G0011088.1 mouse_genomes_project 18 9987231 9988526 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049886.1 MGP_CASTEiJ_G0023764.1 mouse_genomes_project 18 74012568 74022443 + MGP_CASTEiJ_P0049886 Mbd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049887.1 MGP_CASTEiJ_G0023764.1 mouse_genomes_project 18 74013092 74027546 + MGP_CASTEiJ_P0049887 Mbd1 protein_coding protein_coding MGP_CASTEiJ_T0049008.1 MGP_CASTEiJ_G0023452.1 mouse_genomes_project 18 32562804 32580830 - MGP_CASTEiJ_P0049008 4933408B17Rik protein_coding protein_coding MGP_CASTEiJ_T0049009.1 MGP_CASTEiJ_G0023452.1 mouse_genomes_project 18 32562903 32580707 - MGP_CASTEiJ_P0049009 4933408B17Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048710.1 MGP_CASTEiJ_G0023338.1 mouse_genomes_project 18 3652991 3682669 + MGP_CASTEiJ_P0048710 Rab18 protein_coding protein_coding MGP_CASTEiJ_T0048711.1 MGP_CASTEiJ_G0023338.1 mouse_genomes_project 18 3653015 3675306 + MGP_CASTEiJ_P0048711 Rab18 protein_coding unknown_likely_coding MGP_CASTEiJ_T0099583.1 MGP_CASTEiJ_G0036496.1 mouse_genomes_project 18 65195147 65195207 - Gm25150 snRNA snRNA MGP_CASTEiJ_T0006851.1 MGP_CASTEiJ_G0005648.1 mouse_genomes_project 18 53754860 53851324 + Gm4221 lincRNA lincRNA MGP_CASTEiJ_T0006852.1 MGP_CASTEiJ_G0005648.1 mouse_genomes_project 18 53827878 53853401 + Gm4221 lincRNA lincRNA MGP_CASTEiJ_T0011130.1 MGP_CASTEiJ_G0009318.1 mouse_genomes_project 18 54414519 54414804 - Gm24514 misc_RNA misc_RNA MGP_CASTEiJ_T0049647.1 MGP_CASTEiJ_G0023700.1 mouse_genomes_project 18 61634291 61776989 - MGP_CASTEiJ_P0049647 Spink13 protein_coding protein_coding MGP_CASTEiJ_T0049530.1 MGP_CASTEiJ_G0023656.1 mouse_genomes_project 18 56390478 56401534 + MGP_CASTEiJ_P0049530 Ctxn3 protein_coding protein_coding MGP_CASTEiJ_T0098556.1 MGP_CASTEiJ_G0035487.1 mouse_genomes_project 18 69093202 69093311 + Gm24845 rRNA rRNA MGP_CASTEiJ_T0049559.1 MGP_CASTEiJ_G0023670.1 mouse_genomes_project 18 59477242 59489321 + MGP_CASTEiJ_P0049559 Rbm22 protein_coding protein_coding MGP_CASTEiJ_T0049560.1 MGP_CASTEiJ_G0023670.1 mouse_genomes_project 18 59477270 59477993 + Rbm22 protein_coding retained_intron MGP_CASTEiJ_T0049561.1 MGP_CASTEiJ_G0023670.1 mouse_genomes_project 18 59477274 59486797 + Rbm22 protein_coding retained_intron MGP_CASTEiJ_T0049562.1 MGP_CASTEiJ_G0023670.1 mouse_genomes_project 18 59486905 59487652 + Rbm22 protein_coding retained_intron MGP_CASTEiJ_T0049563.1 MGP_CASTEiJ_G0023670.1 mouse_genomes_project 18 59487088 59488503 + Rbm22 protein_coding retained_intron MGP_CASTEiJ_T0099561.1 MGP_CASTEiJ_G0036474.1 mouse_genomes_project 18 18803962 18804069 - Gm22886 snRNA snRNA MGP_CASTEiJ_T0049564.1 MGP_CASTEiJ_G0023671.1 mouse_genomes_project 18 59492768 59508520 - MGP_CASTEiJ_P0049564 Myoz3 protein_coding protein_coding MGP_CASTEiJ_T0049370.1 MGP_CASTEiJ_G0023594.1 mouse_genomes_project 18 41923845 42088137 - MGP_CASTEiJ_P0049370 Jakmip2 protein_coding protein_coding MGP_CASTEiJ_T0049371.1 MGP_CASTEiJ_G0023594.1 mouse_genomes_project 18 41939068 41976855 - MGP_CASTEiJ_P0049371 Jakmip2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048600.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 78532 137753 - MGP_CASTEiJ_P0048600 Crem protein_coding protein_coding MGP_CASTEiJ_T0048601.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 78838 150693 - MGP_CASTEiJ_P0048601 Crem protein_coding protein_coding MGP_CASTEiJ_T0048602.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 78840 150603 - MGP_CASTEiJ_P0048602 Crem protein_coding protein_coding MGP_CASTEiJ_T0048603.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 78840 111779 - MGP_CASTEiJ_P0048603 Crem protein_coding protein_coding MGP_CASTEiJ_T0048604.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 78840 150603 - MGP_CASTEiJ_P0048604 Crem protein_coding protein_coding MGP_CASTEiJ_T0048605.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 78840 150502 - MGP_CASTEiJ_P0048605 Crem protein_coding protein_coding MGP_CASTEiJ_T0048606.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 78840 150603 - MGP_CASTEiJ_P0048606 Crem protein_coding protein_coding MGP_CASTEiJ_T0048607.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 79441 94001 - MGP_CASTEiJ_P0048607 Crem protein_coding protein_coding MGP_CASTEiJ_T0048608.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 79447 150527 - Crem protein_coding processed_transcript MGP_CASTEiJ_T0048609.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 79745 150762 - MGP_CASTEiJ_P0048609 Crem protein_coding protein_coding MGP_CASTEiJ_T0048610.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 79748 111776 - MGP_CASTEiJ_P0048610 Crem protein_coding protein_coding MGP_CASTEiJ_T0048611.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 79874 93979 - MGP_CASTEiJ_P0048611 Crem protein_coding protein_coding MGP_CASTEiJ_T0048612.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 79907 137669 - MGP_CASTEiJ_P0048612 Crem protein_coding protein_coding MGP_CASTEiJ_T0048613.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 79998 135636 - MGP_CASTEiJ_P0048613 Crem protein_coding protein_coding MGP_CASTEiJ_T0048614.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80018 93364 - MGP_CASTEiJ_P0048614 Crem protein_coding protein_coding MGP_CASTEiJ_T0048615.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80030 93310 - MGP_CASTEiJ_P0048615 Crem protein_coding protein_coding MGP_CASTEiJ_T0048616.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80042 135640 - MGP_CASTEiJ_P0048616 Crem protein_coding protein_coding MGP_CASTEiJ_T0048617.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80056 94001 - MGP_CASTEiJ_P0048617 Crem protein_coding protein_coding MGP_CASTEiJ_T0048618.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80059 135636 - MGP_CASTEiJ_P0048618 Crem protein_coding protein_coding MGP_CASTEiJ_T0048619.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80069 137669 - MGP_CASTEiJ_P0048619 Crem protein_coding protein_coding MGP_CASTEiJ_T0048620.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80069 150547 - MGP_CASTEiJ_P0048620 Crem protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048621.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80069 137669 - MGP_CASTEiJ_P0048621 Crem protein_coding protein_coding MGP_CASTEiJ_T0048622.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80069 137669 - MGP_CASTEiJ_P0048622 Crem protein_coding protein_coding MGP_CASTEiJ_T0048623.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80069 137669 - MGP_CASTEiJ_P0048623 Crem protein_coding protein_coding MGP_CASTEiJ_T0048624.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80072 121812 - MGP_CASTEiJ_P0048624 Crem protein_coding protein_coding MGP_CASTEiJ_T0048625.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80072 135636 - MGP_CASTEiJ_P0048625 Crem protein_coding protein_coding MGP_CASTEiJ_T0048626.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80072 121947 - MGP_CASTEiJ_P0048626 Crem protein_coding protein_coding MGP_CASTEiJ_T0048627.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80072 121812 - MGP_CASTEiJ_P0048627 Crem protein_coding protein_coding MGP_CASTEiJ_T0048628.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80117 93333 - MGP_CASTEiJ_P0048628 Crem protein_coding protein_coding MGP_CASTEiJ_T0048629.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80323 135636 - MGP_CASTEiJ_P0048629 Crem protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048630.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80329 93970 - MGP_CASTEiJ_P0048630 Crem protein_coding protein_coding MGP_CASTEiJ_T0048631.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80469 111672 - MGP_CASTEiJ_P0048631 Crem protein_coding protein_coding MGP_CASTEiJ_T0048632.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 80469 121989 - MGP_CASTEiJ_P0048632 Crem protein_coding protein_coding MGP_CASTEiJ_T0048633.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 96117 111761 - Crem protein_coding processed_transcript MGP_CASTEiJ_T0048634.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 99850 111776 - Crem protein_coding retained_intron MGP_CASTEiJ_T0048635.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 100273 111774 - Crem protein_coding processed_transcript MGP_CASTEiJ_T0048636.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 106378 150603 - MGP_CASTEiJ_P0048636 Crem protein_coding protein_coding MGP_CASTEiJ_T0048637.1 MGP_CASTEiJ_G0023324.1 mouse_genomes_project 18 106672 150588 - MGP_CASTEiJ_P0048637 Crem protein_coding protein_coding MGP_CASTEiJ_T0003672.1 MGP_CASTEiJ_G0003309.1 mouse_genomes_project 18 7663176 7667331 - Mir133a-1hg antisense antisense MGP_CASTEiJ_T0049832.1 MGP_CASTEiJ_G0023747.1 mouse_genomes_project 18 69505575 69527435 + Ccdc68 protein_coding processed_transcript MGP_CASTEiJ_T0049833.1 MGP_CASTEiJ_G0023747.1 mouse_genomes_project 18 69505615 69554919 + MGP_CASTEiJ_P0049833 Ccdc68 protein_coding protein_coding MGP_CASTEiJ_T0049834.1 MGP_CASTEiJ_G0023747.1 mouse_genomes_project 18 69505719 69522397 + Ccdc68 protein_coding processed_transcript MGP_CASTEiJ_T0049835.1 MGP_CASTEiJ_G0023747.1 mouse_genomes_project 18 69505725 69554919 + MGP_CASTEiJ_P0049835 Ccdc68 protein_coding protein_coding MGP_CASTEiJ_T0049557.1 MGP_CASTEiJ_G0023669.1 mouse_genomes_project 18 59444668 59475270 + MGP_CASTEiJ_P0049557 Dctn4 protein_coding protein_coding MGP_CASTEiJ_T0049558.1 MGP_CASTEiJ_G0023669.1 mouse_genomes_project 18 59444678 59475273 + MGP_CASTEiJ_P0049558 Dctn4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048717.1 MGP_CASTEiJ_G0023340.1 mouse_genomes_project 18 3979100 4192295 - MGP_CASTEiJ_P0048717 Armc4 protein_coding protein_coding MGP_CASTEiJ_T0048718.1 MGP_CASTEiJ_G0023340.1 mouse_genomes_project 18 4020745 4192328 - MGP_CASTEiJ_P0048718 Armc4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049642.1 MGP_CASTEiJ_G0023696.1 mouse_genomes_project 18 61205311 61209614 + MGP_CASTEiJ_P0049642 Gm9949 protein_coding protein_coding MGP_CASTEiJ_T0049712.1 MGP_CASTEiJ_G0023717.1 mouse_genomes_project 18 64966728 65021575 + MGP_CASTEiJ_P0049712 Oacyl protein_coding protein_coding MGP_CASTEiJ_T0049713.1 MGP_CASTEiJ_G0023717.1 mouse_genomes_project 18 64966730 65021639 + MGP_CASTEiJ_P0049713 Oacyl protein_coding protein_coding MGP_CASTEiJ_T0049714.1 MGP_CASTEiJ_G0023717.1 mouse_genomes_project 18 65018992 65020422 + Oacyl protein_coding processed_transcript MGP_CASTEiJ_T0049353.1 MGP_CASTEiJ_G0023589.1 mouse_genomes_project 18 40834584 40906016 + MGP_CASTEiJ_P0049353 Tcerg1 protein_coding protein_coding MGP_CASTEiJ_T0049354.1 MGP_CASTEiJ_G0023589.1 mouse_genomes_project 18 40834597 40905309 + MGP_CASTEiJ_P0049354 Tcerg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0099569.1 MGP_CASTEiJ_G0036482.1 mouse_genomes_project 18 45318829 45318936 + Gm23610 snRNA snRNA MGP_CASTEiJ_T0049907.1 MGP_CASTEiJ_G0023772.1 mouse_genomes_project 18 75209665 75238594 + MGP_CASTEiJ_P0049907 Smad7 protein_coding protein_coding MGP_CASTEiJ_T0049908.1 MGP_CASTEiJ_G0023772.1 mouse_genomes_project 18 75211001 75238139 + MGP_CASTEiJ_P0049908 Smad7 protein_coding protein_coding MGP_CASTEiJ_T0049909.1 MGP_CASTEiJ_G0023772.1 mouse_genomes_project 18 75211108 75236643 + MGP_CASTEiJ_P0049909 Smad7 protein_coding protein_coding MGP_CASTEiJ_T0049910.1 MGP_CASTEiJ_G0023772.1 mouse_genomes_project 18 75212180 75237022 + MGP_CASTEiJ_P0049910 Smad7 protein_coding protein_coding MGP_CASTEiJ_T0049911.1 MGP_CASTEiJ_G0023772.1 mouse_genomes_project 18 75217163 75236658 + Smad7 protein_coding processed_transcript MGP_CASTEiJ_T0006818.1 MGP_CASTEiJ_G0005623.1 mouse_genomes_project 18 1186265 1192496 - Gm26865 lincRNA lincRNA MGP_CASTEiJ_T0003691.1 MGP_CASTEiJ_G0003325.1 mouse_genomes_project 18 35939489 35941694 - BC037039 antisense antisense MGP_CASTEiJ_T0049468.1 MGP_CASTEiJ_G0023630.1 mouse_genomes_project 18 48846041 48850689 + MGP_CASTEiJ_P0049468 Fam170a protein_coding protein_coding MGP_CASTEiJ_T0050047.1 MGP_CASTEiJ_G0023813.1 mouse_genomes_project 18 84402033 84861015 - MGP_CASTEiJ_P0050047 Zfp407 protein_coding protein_coding MGP_CASTEiJ_T0050048.1 MGP_CASTEiJ_G0023813.1 mouse_genomes_project 18 84490104 84894432 - MGP_CASTEiJ_P0050048 Zfp407 protein_coding protein_coding MGP_CASTEiJ_T0050049.1 MGP_CASTEiJ_G0023813.1 mouse_genomes_project 18 84565836 84708124 - Zfp407 protein_coding processed_transcript MGP_CASTEiJ_T0050050.1 MGP_CASTEiJ_G0023813.1 mouse_genomes_project 18 84725588 84730536 - Zfp407 protein_coding retained_intron MGP_CASTEiJ_T0050051.1 MGP_CASTEiJ_G0023813.1 mouse_genomes_project 18 84795756 84860965 - Zfp407 protein_coding processed_transcript MGP_CASTEiJ_T0050052.1 MGP_CASTEiJ_G0023813.1 mouse_genomes_project 18 84855472 84894653 - Zfp407 protein_coding processed_transcript MGP_CASTEiJ_T0006856.1 MGP_CASTEiJ_G0005651.1 mouse_genomes_project 18 60642490 60659006 - Carmn lincRNA lincRNA MGP_CASTEiJ_T0006857.1 MGP_CASTEiJ_G0005651.1 mouse_genomes_project 18 60643844 60659053 - Carmn lincRNA lincRNA MGP_CASTEiJ_T0049515.1 MGP_CASTEiJ_G0023650.1 mouse_genomes_project 18 55461515 55469612 + MGP_CASTEiJ_P0049515 Tex43 protein_coding protein_coding MGP_CASTEiJ_T0049516.1 MGP_CASTEiJ_G0023650.1 mouse_genomes_project 18 55461544 55467446 + MGP_CASTEiJ_P0049516 Tex43 protein_coding protein_coding MGP_CASTEiJ_T0049517.1 MGP_CASTEiJ_G0023650.1 mouse_genomes_project 18 55461554 55469542 + MGP_CASTEiJ_P0049517 Tex43 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049518.1 MGP_CASTEiJ_G0023650.1 mouse_genomes_project 18 55461591 55469612 + MGP_CASTEiJ_P0049518 Tex43 protein_coding protein_coding MGP_CASTEiJ_T0049203.1 MGP_CASTEiJ_G0023529.1 mouse_genomes_project 18 35594114 35597148 + MGP_CASTEiJ_P0049203 Pcdhb12 protein_coding protein_coding MGP_CASTEiJ_T0048884.1 MGP_CASTEiJ_G0023398.1 mouse_genomes_project 18 20694168 20731578 + MGP_CASTEiJ_P0048884 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0100796.1 MGP_CASTEiJ_G0037709.1 mouse_genomes_project 18 32964670 32964737 - Gm22200 snoRNA snoRNA MGP_CASTEiJ_T0050078.1 MGP_CASTEiJ_G0023824.1 mouse_genomes_project 18 89853259 90348152 - MGP_CASTEiJ_P0050078 Dok6 protein_coding protein_coding MGP_CASTEiJ_T0050080.1 MGP_CASTEiJ_G0023824.1 mouse_genomes_project 18 90033615 90128599 - Dok6 protein_coding retained_intron MGP_CASTEiJ_T0009980.1 MGP_CASTEiJ_G0008168.1 mouse_genomes_project 18 56612805 56612901 + Gm44491 miRNA miRNA MGP_CASTEiJ_T0050035.1 MGP_CASTEiJ_G0023809.1 mouse_genomes_project 18 82770290 82883860 - MGP_CASTEiJ_P0050035 Zfp236 protein_coding protein_coding MGP_CASTEiJ_T0050036.1 MGP_CASTEiJ_G0023809.1 mouse_genomes_project 18 82772173 82794626 - MGP_CASTEiJ_P0050036 Zfp236 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050037.1 MGP_CASTEiJ_G0023809.1 mouse_genomes_project 18 82773219 82883804 - MGP_CASTEiJ_P0050037 Zfp236 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050038.1 MGP_CASTEiJ_G0023809.1 mouse_genomes_project 18 82773852 82883726 - MGP_CASTEiJ_P0050038 Zfp236 protein_coding protein_coding MGP_CASTEiJ_T0050039.1 MGP_CASTEiJ_G0023809.1 mouse_genomes_project 18 82773852 82883726 - MGP_CASTEiJ_P0050039 Zfp236 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050040.1 MGP_CASTEiJ_G0023809.1 mouse_genomes_project 18 82826645 82827828 - Zfp236 protein_coding retained_intron MGP_CASTEiJ_T0050041.1 MGP_CASTEiJ_G0023809.1 mouse_genomes_project 18 82871671 82882780 - MGP_CASTEiJ_P0050041 Zfp236 protein_coding protein_coding MGP_CASTEiJ_T0011118.1 MGP_CASTEiJ_G0009306.1 mouse_genomes_project 18 17014906 17015202 + Gm25392 misc_RNA misc_RNA MGP_CASTEiJ_T0049883.1 MGP_CASTEiJ_G0023762.1 mouse_genomes_project 18 73939731 73958071 - MGP_CASTEiJ_P0049883 Ska1 protein_coding protein_coding MGP_CASTEiJ_T0049884.1 MGP_CASTEiJ_G0023762.1 mouse_genomes_project 18 73939731 73958071 - MGP_CASTEiJ_P0049884 Ska1 protein_coding protein_coding MGP_CASTEiJ_T0049602.1 MGP_CASTEiJ_G0023680.1 mouse_genomes_project 18 59968423 59987080 - MGP_CASTEiJ_P0049602 Cdx1 protein_coding protein_coding MGP_CASTEiJ_T0099562.1 MGP_CASTEiJ_G0036475.1 mouse_genomes_project 18 21296685 21296787 - Gm23207 snRNA snRNA MGP_CASTEiJ_T0049417.1 MGP_CASTEiJ_G0023616.1 mouse_genomes_project 18 44977148 44992289 - MGP_CASTEiJ_P0049417 Ticam2 protein_coding protein_coding MGP_CASTEiJ_T0049419.1 MGP_CASTEiJ_G0023616.1 mouse_genomes_project 18 44988970 44992289 - Ticam2 protein_coding retained_intron MGP_CASTEiJ_T0049194.1 MGP_CASTEiJ_G0023522.1 mouse_genomes_project 18 35487445 35490979 + MGP_CASTEiJ_P0049194 Pcdhb5 protein_coding protein_coding MGP_CASTEiJ_T0098554.1 MGP_CASTEiJ_G0035485.1 mouse_genomes_project 18 62582331 62582452 + Gm22560 rRNA rRNA MGP_CASTEiJ_T0049002.1 MGP_CASTEiJ_G0023449.1 mouse_genomes_project 18 32405634 32476092 - MGP_CASTEiJ_P0049002 Fam13b protein_coding protein_coding MGP_CASTEiJ_T0048911.1 MGP_CASTEiJ_G0023408.1 mouse_genomes_project 18 22012382 22059464 - MGP_CASTEiJ_P0048911 Rprd1a protein_coding protein_coding MGP_CASTEiJ_T0049179.1 MGP_CASTEiJ_G0023512.1 mouse_genomes_project 18 35189715 35356123 + MGP_CASTEiJ_P0049179 Pcdha9 protein_coding protein_coding MGP_CASTEiJ_T0049176.1 MGP_CASTEiJ_G0023509.1 mouse_genomes_project 18 35165606 35969236 + MGP_CASTEiJ_P0049176 Gm37013 protein_coding protein_coding MGP_CASTEiJ_T0048948.1 MGP_CASTEiJ_G0023424.1 mouse_genomes_project 18 29612036 29638892 + MGP_CASTEiJ_P0048948 Ammecr1l protein_coding protein_coding MGP_CASTEiJ_T0003685.1 MGP_CASTEiJ_G0003319.1 mouse_genomes_project 18 35163280 35163839 - Gm37753 antisense antisense MGP_CASTEiJ_T0006839.1 MGP_CASTEiJ_G0005639.1 mouse_genomes_project 18 32750615 32756887 + 2010110K18Rik lincRNA lincRNA MGP_CASTEiJ_T0006840.1 MGP_CASTEiJ_G0005639.1 mouse_genomes_project 18 32750718 32758731 + 2010110K18Rik lincRNA lincRNA MGP_CASTEiJ_T0012958.1 MGP_CASTEiJ_G0011121.1 mouse_genomes_project 18 68774344 68775179 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0016882.1 MGP_CASTEiJ_G0014677.1 mouse_genomes_project 18 48327906 48329312 + Gm16283 processed_transcript processed_transcript MGP_CASTEiJ_T0049739.1 MGP_CASTEiJ_G0023726.1 mouse_genomes_project 18 66435238 66586455 + MGP_CASTEiJ_P0049739 Gnal protein_coding protein_coding MGP_CASTEiJ_T0049740.1 MGP_CASTEiJ_G0023726.1 mouse_genomes_project 18 66489454 66586455 + MGP_CASTEiJ_P0049740 Gnal protein_coding protein_coding MGP_CASTEiJ_T0049741.1 MGP_CASTEiJ_G0023726.1 mouse_genomes_project 18 66565099 66586455 + MGP_CASTEiJ_P0049741 Gnal protein_coding unknown_likely_coding MGP_CASTEiJ_T0003688.1 MGP_CASTEiJ_G0003322.1 mouse_genomes_project 18 35591902 35596041 - Gm37446 antisense antisense MGP_CASTEiJ_T0012944.1 MGP_CASTEiJ_G0011107.1 mouse_genomes_project 18 37581889 37582253 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100786.1 MGP_CASTEiJ_G0037699.1 mouse_genomes_project 18 13109456 13109585 + Gm24228 snoRNA snoRNA MGP_CASTEiJ_T0049746.1 MGP_CASTEiJ_G0023731.1 mouse_genomes_project 18 66789244 66833930 - MGP_CASTEiJ_P0049746 Afg3l2 protein_coding protein_coding MGP_CASTEiJ_T0012945.1 MGP_CASTEiJ_G0011108.1 mouse_genomes_project 18 39005148 39005589 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048942.1 MGP_CASTEiJ_G0023419.1 mouse_genomes_project 18 29157937 29158834 - MGP_CASTEiJ_P0048942 Gm5611 protein_coding protein_coding MGP_CASTEiJ_T0048742.1 MGP_CASTEiJ_G0023350.1 mouse_genomes_project 18 6853067 6890553 - MGP_CASTEiJ_P0048742 Usp14 protein_coding protein_coding MGP_CASTEiJ_T0048743.1 MGP_CASTEiJ_G0023350.1 mouse_genomes_project 18 6853229 6890479 - MGP_CASTEiJ_P0048743 Usp14 protein_coding protein_coding MGP_CASTEiJ_T0048744.1 MGP_CASTEiJ_G0023350.1 mouse_genomes_project 18 6854535 6858217 - Usp14 protein_coding retained_intron MGP_CASTEiJ_T0048745.1 MGP_CASTEiJ_G0023350.1 mouse_genomes_project 18 6859469 6867597 - Usp14 protein_coding retained_intron MGP_CASTEiJ_T0048746.1 MGP_CASTEiJ_G0023350.1 mouse_genomes_project 18 6868533 6890493 - Usp14 protein_coding retained_intron MGP_CASTEiJ_T0048747.1 MGP_CASTEiJ_G0023350.1 mouse_genomes_project 18 6871183 6876308 - Usp14 protein_coding retained_intron MGP_CASTEiJ_T0048748.1 MGP_CASTEiJ_G0023350.1 mouse_genomes_project 18 6884571 6890434 - Usp14 protein_coding retained_intron MGP_CASTEiJ_T0049972.1 MGP_CASTEiJ_G0023789.1 mouse_genomes_project 18 78035998 78053202 - MGP_CASTEiJ_P0049972 Siglec15 protein_coding protein_coding MGP_CASTEiJ_T0049872.1 MGP_CASTEiJ_G0023759.1 mouse_genomes_project 18 73588801 73613733 + MGP_CASTEiJ_P0049872 Mro protein_coding protein_coding MGP_CASTEiJ_T0049873.1 MGP_CASTEiJ_G0023759.1 mouse_genomes_project 18 73588803 73614125 + MGP_CASTEiJ_P0049873 Mro protein_coding protein_coding MGP_CASTEiJ_T0049874.1 MGP_CASTEiJ_G0023759.1 mouse_genomes_project 18 73588810 73616328 + Mro protein_coding processed_transcript MGP_CASTEiJ_T0049875.1 MGP_CASTEiJ_G0023759.1 mouse_genomes_project 18 73588818 73613733 + MGP_CASTEiJ_P0049875 Mro protein_coding protein_coding MGP_CASTEiJ_T0049876.1 MGP_CASTEiJ_G0023759.1 mouse_genomes_project 18 73594715 73602607 + Mro protein_coding retained_intron MGP_CASTEiJ_T0049877.1 MGP_CASTEiJ_G0023759.1 mouse_genomes_project 18 73594756 73604343 + MGP_CASTEiJ_P0049877 Mro protein_coding protein_coding MGP_CASTEiJ_T0012934.1 MGP_CASTEiJ_G0011097.1 mouse_genomes_project 18 28209080 28209542 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006822.1 MGP_CASTEiJ_G0005627.1 mouse_genomes_project 18 7955822 7958265 - 1010001N08Rik lincRNA lincRNA MGP_CASTEiJ_T0006823.1 MGP_CASTEiJ_G0005627.1 mouse_genomes_project 18 7956666 7959340 - 1010001N08Rik lincRNA lincRNA MGP_CASTEiJ_T0009992.1 MGP_CASTEiJ_G0008180.1 mouse_genomes_project 18 67717584 67717638 - Mir7219 miRNA miRNA MGP_CASTEiJ_T0000964.1 MGP_CASTEiJ_G0000900.1 mouse_genomes_project 18 33665007 33667167 + TEC TEC MGP_CASTEiJ_T0049085.1 MGP_CASTEiJ_G0023475.1 mouse_genomes_project 18 33761205 33795469 - MGP_CASTEiJ_P0049085 Dnajc18 protein_coding protein_coding MGP_CASTEiJ_T0099566.1 MGP_CASTEiJ_G0036479.1 mouse_genomes_project 18 36462471 36462574 + Gm23205 snRNA snRNA MGP_CASTEiJ_T0011134.1 MGP_CASTEiJ_G0009322.1 mouse_genomes_project 18 66014972 66015291 + Gm22219 misc_RNA misc_RNA MGP_CASTEiJ_T0049445.1 MGP_CASTEiJ_G0023627.1 mouse_genomes_project 18 48402197 48541231 + MGP_CASTEiJ_P0049445 Dmxl1 protein_coding protein_coding MGP_CASTEiJ_T0049446.1 MGP_CASTEiJ_G0023627.1 mouse_genomes_project 18 48402515 48542451 + MGP_CASTEiJ_P0049446 Dmxl1 protein_coding protein_coding MGP_CASTEiJ_T0049447.1 MGP_CASTEiJ_G0023627.1 mouse_genomes_project 18 48402608 48516266 + MGP_CASTEiJ_P0049447 Dmxl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049448.1 MGP_CASTEiJ_G0023627.1 mouse_genomes_project 18 48466374 48509337 + Dmxl1 protein_coding retained_intron MGP_CASTEiJ_T0049449.1 MGP_CASTEiJ_G0023627.1 mouse_genomes_project 18 48527035 48531245 + Dmxl1 protein_coding retained_intron MGP_CASTEiJ_T0049450.1 MGP_CASTEiJ_G0023627.1 mouse_genomes_project 18 48532137 48535798 + Dmxl1 protein_coding retained_intron MGP_CASTEiJ_T0006832.1 MGP_CASTEiJ_G0005633.1 mouse_genomes_project 18 29718592 29721665 - Gm26823 lincRNA lincRNA MGP_CASTEiJ_T0099585.1 MGP_CASTEiJ_G0036498.1 mouse_genomes_project 18 78676657 78676817 + Gm23895 snRNA snRNA MGP_CASTEiJ_T0049487.1 MGP_CASTEiJ_G0023640.1 mouse_genomes_project 18 51836765 51862198 + MGP_CASTEiJ_P0049487 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049488.1 MGP_CASTEiJ_G0023640.1 mouse_genomes_project 18 51836889 51877492 + MGP_CASTEiJ_P0049488 protein_coding protein_coding MGP_CASTEiJ_T0012938.1 MGP_CASTEiJ_G0011101.1 mouse_genomes_project 18 35109225 35112300 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049640.1 MGP_CASTEiJ_G0023694.1 mouse_genomes_project 18 60967401 61035396 + MGP_CASTEiJ_P0049640 Sh3tc2 protein_coding protein_coding MGP_CASTEiJ_T0049000.1 MGP_CASTEiJ_G0023448.1 mouse_genomes_project 18 32372746 32405078 + MGP_CASTEiJ_P0049000 Pkd2l2 protein_coding protein_coding MGP_CASTEiJ_T0049001.1 MGP_CASTEiJ_G0023448.1 mouse_genomes_project 18 32372746 32406072 + MGP_CASTEiJ_P0049001 Pkd2l2 protein_coding protein_coding MGP_CASTEiJ_T0049393.1 MGP_CASTEiJ_G0023609.1 mouse_genomes_project 18 42820481 43225306 - MGP_CASTEiJ_P0049393 Mcc protein_coding protein_coding MGP_CASTEiJ_T0049394.1 MGP_CASTEiJ_G0023609.1 mouse_genomes_project 18 42824548 43079526 - MGP_CASTEiJ_P0049394 Mcc protein_coding protein_coding MGP_CASTEiJ_T0049395.1 MGP_CASTEiJ_G0023609.1 mouse_genomes_project 18 42826358 43079045 - MGP_CASTEiJ_P0049395 Mcc protein_coding unknown_likely_coding MGP_CASTEiJ_T0049396.1 MGP_CASTEiJ_G0023609.1 mouse_genomes_project 18 42916347 42919022 - Mcc protein_coding retained_intron MGP_CASTEiJ_T0049397.1 MGP_CASTEiJ_G0023609.1 mouse_genomes_project 18 43075794 43079544 - Mcc protein_coding retained_intron MGP_CASTEiJ_T0049398.1 MGP_CASTEiJ_G0023609.1 mouse_genomes_project 18 43125391 43140248 - Mcc protein_coding processed_transcript MGP_CASTEiJ_T0016906.1 MGP_CASTEiJ_G0014685.1 mouse_genomes_project 18 85031629 85033401 - D030046N08Rik processed_transcript processed_transcript MGP_CASTEiJ_T0048843.1 MGP_CASTEiJ_G0023382.1 mouse_genomes_project 18 17357127 17389092 - MGP_CASTEiJ_P0048843 Dsc2 protein_coding protein_coding MGP_CASTEiJ_T0048844.1 MGP_CASTEiJ_G0023382.1 mouse_genomes_project 18 17357127 17389168 - MGP_CASTEiJ_P0048844 Dsc2 protein_coding protein_coding MGP_CASTEiJ_T0048845.1 MGP_CASTEiJ_G0023382.1 mouse_genomes_project 18 17357837 17367019 - MGP_CASTEiJ_P0048845 Dsc2 protein_coding protein_coding MGP_CASTEiJ_T0048846.1 MGP_CASTEiJ_G0023382.1 mouse_genomes_project 18 17357973 17389123 - MGP_CASTEiJ_P0048846 Dsc2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049095.1 MGP_CASTEiJ_G0023479.1 mouse_genomes_project 18 33871309 33927232 + MGP_CASTEiJ_P0049095 Ube2d2a protein_coding protein_coding MGP_CASTEiJ_T0049096.1 MGP_CASTEiJ_G0023479.1 mouse_genomes_project 18 33871352 33927223 + MGP_CASTEiJ_P0049096 Ube2d2a protein_coding protein_coding MGP_CASTEiJ_T0049097.1 MGP_CASTEiJ_G0023479.1 mouse_genomes_project 18 33873594 33912523 + MGP_CASTEiJ_P0049097 Ube2d2a protein_coding unknown_likely_coding MGP_CASTEiJ_T0049187.1 MGP_CASTEiJ_G0023516.1 mouse_genomes_project 18 35258517 35356123 + MGP_CASTEiJ_P0049187 Pcdhac1 protein_coding protein_coding MGP_CASTEiJ_T0016883.1 MGP_CASTEiJ_G0014678.1 mouse_genomes_project 18 48620576 48631477 - C030005K06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016884.1 MGP_CASTEiJ_G0014678.1 mouse_genomes_project 18 48624024 48631661 - C030005K06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016885.1 MGP_CASTEiJ_G0014678.1 mouse_genomes_project 18 48630095 48631661 - C030005K06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016886.1 MGP_CASTEiJ_G0014678.1 mouse_genomes_project 18 48630115 48631422 - C030005K06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0011128.1 MGP_CASTEiJ_G0009316.1 mouse_genomes_project 18 40904673 40904829 + Gm27457 misc_RNA misc_RNA MGP_CASTEiJ_T0099578.1 MGP_CASTEiJ_G0036491.1 mouse_genomes_project 18 62577654 62577717 + Gm23581 snRNA snRNA MGP_CASTEiJ_T0049163.1 MGP_CASTEiJ_G0023502.1 mouse_genomes_project 18 35121108 35356127 + MGP_CASTEiJ_P0049163 Pcdha1 protein_coding protein_coding MGP_CASTEiJ_T0049164.1 MGP_CASTEiJ_G0023502.1 mouse_genomes_project 18 35121209 35356123 + MGP_CASTEiJ_P0049164 Pcdha1 protein_coding protein_coding MGP_CASTEiJ_T0009964.1 MGP_CASTEiJ_G0008152.1 mouse_genomes_project 18 8842843 8842921 - Mir1901 miRNA miRNA MGP_CASTEiJ_T0009978.1 MGP_CASTEiJ_G0008166.1 mouse_genomes_project 18 55068346 55068531 + Gm25476 miRNA miRNA MGP_CASTEiJ_T0099564.1 MGP_CASTEiJ_G0036477.1 mouse_genomes_project 18 31952797 31952858 - Gm22788 snRNA snRNA MGP_CASTEiJ_T0049235.1 MGP_CASTEiJ_G0023554.1 mouse_genomes_project 18 35863894 35977831 + MGP_CASTEiJ_P0049235 Pcdhga9 protein_coding protein_coding MGP_CASTEiJ_T0049236.1 MGP_CASTEiJ_G0023554.1 mouse_genomes_project 18 35864327 35867367 + Pcdhga9 protein_coding retained_intron MGP_CASTEiJ_T0048981.1 MGP_CASTEiJ_G0023443.1 mouse_genomes_project 18 31341244 31350664 + MGP_CASTEiJ_P0048981 Gm10549 protein_coding protein_coding MGP_CASTEiJ_T0049524.1 MGP_CASTEiJ_G0023653.1 mouse_genomes_project 18 55846023 55865903 - MGP_CASTEiJ_P0049524 C330018D20Rik protein_coding protein_coding MGP_CASTEiJ_T0049525.1 MGP_CASTEiJ_G0023653.1 mouse_genomes_project 18 55847806 55865889 - MGP_CASTEiJ_P0049525 C330018D20Rik protein_coding protein_coding MGP_CASTEiJ_T0049526.1 MGP_CASTEiJ_G0023653.1 mouse_genomes_project 18 55858878 55865781 - C330018D20Rik protein_coding processed_transcript MGP_CASTEiJ_T0098547.1 MGP_CASTEiJ_G0035478.1 mouse_genomes_project 18 9630354 9630468 - Gm22340 rRNA rRNA MGP_CASTEiJ_T0012921.1 MGP_CASTEiJ_G0011084.1 mouse_genomes_project 18 5880874 5881868 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049891.1 MGP_CASTEiJ_G0023766.1 mouse_genomes_project 18 74197513 74384996 + MGP_CASTEiJ_P0049891 Myo5b protein_coding protein_coding MGP_CASTEiJ_T0049892.1 MGP_CASTEiJ_G0023766.1 mouse_genomes_project 18 74197541 74276442 + Myo5b protein_coding processed_transcript MGP_CASTEiJ_T0049893.1 MGP_CASTEiJ_G0023766.1 mouse_genomes_project 18 74199125 74535447 + MGP_CASTEiJ_P0049893 Myo5b protein_coding protein_coding MGP_CASTEiJ_T0049894.1 MGP_CASTEiJ_G0023766.1 mouse_genomes_project 18 74199193 74433083 + Myo5b protein_coding processed_transcript MGP_CASTEiJ_T0049895.1 MGP_CASTEiJ_G0023766.1 mouse_genomes_project 18 74199195 74534730 + MGP_CASTEiJ_P0049895 Myo5b protein_coding protein_coding MGP_CASTEiJ_T0049896.1 MGP_CASTEiJ_G0023766.1 mouse_genomes_project 18 74405127 74417761 + Myo5b protein_coding processed_transcript MGP_CASTEiJ_T0049897.1 MGP_CASTEiJ_G0023766.1 mouse_genomes_project 18 74484450 74494244 + Myo5b protein_coding processed_transcript MGP_CASTEiJ_T0049898.1 MGP_CASTEiJ_G0023766.1 mouse_genomes_project 18 74490735 74494237 + MGP_CASTEiJ_P0049898 Myo5b protein_coding protein_coding MGP_CASTEiJ_T0049899.1 MGP_CASTEiJ_G0023766.1 mouse_genomes_project 18 74491950 74494235 + Myo5b protein_coding retained_intron MGP_CASTEiJ_T0049900.1 MGP_CASTEiJ_G0023766.1 mouse_genomes_project 18 74492739 74499662 + Myo5b protein_coding processed_transcript MGP_CASTEiJ_T0049901.1 MGP_CASTEiJ_G0023766.1 mouse_genomes_project 18 74511103 74535431 + Myo5b protein_coding retained_intron MGP_CASTEiJ_T0049424.1 MGP_CASTEiJ_G0023619.1 mouse_genomes_project 18 45132196 45149466 - MGP_CASTEiJ_P0049424 Cdo1 protein_coding protein_coding MGP_CASTEiJ_T0048811.1 MGP_CASTEiJ_G0023368.1 mouse_genomes_project 18 9824398 10039439 - MGP_CASTEiJ_P0048811 Osbpl1a protein_coding protein_coding MGP_CASTEiJ_T0048812.1 MGP_CASTEiJ_G0023368.1 mouse_genomes_project 18 9825272 9964466 - MGP_CASTEiJ_P0048812 Osbpl1a protein_coding protein_coding MGP_CASTEiJ_T0048813.1 MGP_CASTEiJ_G0023368.1 mouse_genomes_project 18 9825285 9925280 - MGP_CASTEiJ_P0048813 Osbpl1a protein_coding protein_coding MGP_CASTEiJ_T0048814.1 MGP_CASTEiJ_G0023368.1 mouse_genomes_project 18 9831623 9836228 - Osbpl1a protein_coding retained_intron MGP_CASTEiJ_T0048815.1 MGP_CASTEiJ_G0023368.1 mouse_genomes_project 18 9835893 9943272 - MGP_CASTEiJ_P0048815 Osbpl1a protein_coding protein_coding MGP_CASTEiJ_T0048816.1 MGP_CASTEiJ_G0023368.1 mouse_genomes_project 18 9840428 9976753 - Osbpl1a protein_coding retained_intron MGP_CASTEiJ_T0048817.1 MGP_CASTEiJ_G0023368.1 mouse_genomes_project 18 9842990 9949075 - MGP_CASTEiJ_P0048817 Osbpl1a protein_coding protein_coding MGP_CASTEiJ_T0048818.1 MGP_CASTEiJ_G0023368.1 mouse_genomes_project 18 9950175 10039439 - Osbpl1a protein_coding retained_intron MGP_CASTEiJ_T0048819.1 MGP_CASTEiJ_G0023368.1 mouse_genomes_project 18 9986921 10039375 - MGP_CASTEiJ_P0048819 Osbpl1a protein_coding protein_coding MGP_CASTEiJ_T0048820.1 MGP_CASTEiJ_G0023368.1 mouse_genomes_project 18 9997066 10039404 - MGP_CASTEiJ_P0048820 Osbpl1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048821.1 MGP_CASTEiJ_G0023368.1 mouse_genomes_project 18 10018599 10039390 - Osbpl1a protein_coding retained_intron MGP_CASTEiJ_T0048822.1 MGP_CASTEiJ_G0023368.1 mouse_genomes_project 18 10024207 10039387 - Osbpl1a protein_coding processed_transcript MGP_CASTEiJ_T0048763.1 MGP_CASTEiJ_G0023355.1 mouse_genomes_project 18 7525831 7542417 - MGP_CASTEiJ_P0048763 Abhd3 protein_coding protein_coding MGP_CASTEiJ_T0048764.1 MGP_CASTEiJ_G0023355.1 mouse_genomes_project 18 7526475 7583325 - MGP_CASTEiJ_P0048764 Abhd3 protein_coding protein_coding MGP_CASTEiJ_T0099590.1 MGP_CASTEiJ_G0036503.1 mouse_genomes_project 18 86694924 86695031 + Gm25453 snRNA snRNA MGP_CASTEiJ_T0048772.1 MGP_CASTEiJ_G0023358.1 mouse_genomes_project 18 8646306 8747532 + MGP_CASTEiJ_P0048772 Rbbp8 protein_coding protein_coding MGP_CASTEiJ_T0048773.1 MGP_CASTEiJ_G0023358.1 mouse_genomes_project 18 8665248 8747532 + MGP_CASTEiJ_P0048773 Rbbp8 protein_coding protein_coding MGP_CASTEiJ_T0048826.1 MGP_CASTEiJ_G0023372.1 mouse_genomes_project 18 11580780 11581224 + MGP_CASTEiJ_P0048826 Gm5160 protein_coding protein_coding MGP_CASTEiJ_T0049426.1 MGP_CASTEiJ_G0023621.1 mouse_genomes_project 18 45163075 45198698 + MGP_CASTEiJ_P0049426 Ap3s1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049888.1 MGP_CASTEiJ_G0023765.1 mouse_genomes_project 18 74027934 74111559 + MGP_CASTEiJ_P0049888 Cfap53 protein_coding protein_coding MGP_CASTEiJ_T0049889.1 MGP_CASTEiJ_G0023765.1 mouse_genomes_project 18 74027966 74111557 + MGP_CASTEiJ_P0049889 Cfap53 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049890.1 MGP_CASTEiJ_G0023765.1 mouse_genomes_project 18 74098418 74111503 + Cfap53 protein_coding processed_transcript MGP_CASTEiJ_T0049859.1 MGP_CASTEiJ_G0023754.1 mouse_genomes_project 18 70863374 72043175 - MGP_CASTEiJ_P0049859 Dcc protein_coding protein_coding MGP_CASTEiJ_T0049860.1 MGP_CASTEiJ_G0023754.1 mouse_genomes_project 18 70863626 72043123 - MGP_CASTEiJ_P0049860 Dcc protein_coding protein_coding MGP_CASTEiJ_T0049861.1 MGP_CASTEiJ_G0023754.1 mouse_genomes_project 18 71611912 72043147 - Dcc protein_coding retained_intron MGP_CASTEiJ_T0099586.1 MGP_CASTEiJ_G0036499.1 mouse_genomes_project 18 81152253 81152382 + Gm25718 snRNA snRNA MGP_CASTEiJ_T0099588.1 MGP_CASTEiJ_G0036501.1 mouse_genomes_project 18 83576446 83576612 - Gm24720 snRNA snRNA MGP_CASTEiJ_T0049603.1 MGP_CASTEiJ_G0023681.1 mouse_genomes_project 18 59995674 60037215 + MGP_CASTEiJ_P0049603 Pdgfrb protein_coding unknown_likely_coding MGP_CASTEiJ_T0049604.1 MGP_CASTEiJ_G0023681.1 mouse_genomes_project 18 59995743 60037212 + MGP_CASTEiJ_P0049604 Pdgfrb protein_coding protein_coding MGP_CASTEiJ_T0049605.1 MGP_CASTEiJ_G0023681.1 mouse_genomes_project 18 59995793 60037207 + MGP_CASTEiJ_P0049605 Pdgfrb protein_coding protein_coding MGP_CASTEiJ_T0049842.1 MGP_CASTEiJ_G0023751.1 mouse_genomes_project 18 70062786 70083736 + MGP_CASTEiJ_P0049842 Stard6 protein_coding protein_coding MGP_CASTEiJ_T0049843.1 MGP_CASTEiJ_G0023751.1 mouse_genomes_project 18 70062904 70083473 + MGP_CASTEiJ_P0049843 Stard6 protein_coding protein_coding MGP_CASTEiJ_T0049844.1 MGP_CASTEiJ_G0023751.1 mouse_genomes_project 18 70062960 70083510 + MGP_CASTEiJ_P0049844 Stard6 protein_coding protein_coding MGP_CASTEiJ_T0049845.1 MGP_CASTEiJ_G0023751.1 mouse_genomes_project 18 70062998 70083477 + MGP_CASTEiJ_P0049845 Stard6 protein_coding protein_coding MGP_CASTEiJ_T0049846.1 MGP_CASTEiJ_G0023751.1 mouse_genomes_project 18 70063355 70073735 + MGP_CASTEiJ_P0049846 Stard6 protein_coding protein_coding MGP_CASTEiJ_T0049847.1 MGP_CASTEiJ_G0023751.1 mouse_genomes_project 18 70063538 70081309 + MGP_CASTEiJ_P0049847 Stard6 protein_coding protein_coding MGP_CASTEiJ_T0048885.1 MGP_CASTEiJ_G0023399.1 mouse_genomes_project 18 20893128 21146377 + MGP_CASTEiJ_P0048885 Dtna protein_coding protein_coding MGP_CASTEiJ_T0048886.1 MGP_CASTEiJ_G0023399.1 mouse_genomes_project 18 20893128 21089314 + MGP_CASTEiJ_P0048886 Dtna protein_coding protein_coding MGP_CASTEiJ_T0048887.1 MGP_CASTEiJ_G0023399.1 mouse_genomes_project 18 21080508 21141637 + MGP_CASTEiJ_P0048887 Dtna protein_coding unknown_likely_coding MGP_CASTEiJ_T0048888.1 MGP_CASTEiJ_G0023399.1 mouse_genomes_project 18 21107443 21122368 + MGP_CASTEiJ_P0048888 Dtna protein_coding unknown_likely_coding MGP_CASTEiJ_T0049045.1 MGP_CASTEiJ_G0023466.1 mouse_genomes_project 18 33328397 33576602 - MGP_CASTEiJ_P0049045 Sil1 protein_coding protein_coding MGP_CASTEiJ_T0100783.1 MGP_CASTEiJ_G0037696.1 mouse_genomes_project 18 6515467 6515595 + Gm22765 snoRNA snoRNA MGP_CASTEiJ_T0049543.1 MGP_CASTEiJ_G0023662.1 mouse_genomes_project 18 57812861 58030441 + MGP_CASTEiJ_P0049543 Adamts19 protein_coding protein_coding MGP_CASTEiJ_T0048869.1 MGP_CASTEiJ_G0023396.1 mouse_genomes_project 18 19800446 19989040 + MGP_CASTEiJ_P0048869 Asxl3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048870.1 MGP_CASTEiJ_G0023396.1 mouse_genomes_project 18 19800548 19989906 + MGP_CASTEiJ_P0048870 Asxl3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048871.1 MGP_CASTEiJ_G0023396.1 mouse_genomes_project 18 19800979 19835681 + Asxl3 protein_coding retained_intron MGP_CASTEiJ_T0048872.1 MGP_CASTEiJ_G0023396.1 mouse_genomes_project 18 19801189 19993718 + MGP_CASTEiJ_P0048872 Asxl3 protein_coding protein_coding MGP_CASTEiJ_T0048873.1 MGP_CASTEiJ_G0023396.1 mouse_genomes_project 18 19801189 19993506 + MGP_CASTEiJ_P0048873 Asxl3 protein_coding protein_coding MGP_CASTEiJ_T0100791.1 MGP_CASTEiJ_G0037704.1 mouse_genomes_project 18 28224392 28224504 + Gm22870 snoRNA snoRNA MGP_CASTEiJ_T0011124.1 MGP_CASTEiJ_G0009312.1 mouse_genomes_project 18 36790461 36790532 + Gm27369 misc_RNA misc_RNA MGP_CASTEiJ_T0049904.1 MGP_CASTEiJ_G0023769.1 mouse_genomes_project 18 74791762 74795924 + MGP_CASTEiJ_P0049904 protein_coding protein_coding MGP_CASTEiJ_T0048854.1 MGP_CASTEiJ_G0023388.1 mouse_genomes_project 18 18057078 18123446 - MGP_CASTEiJ_P0048854 B4galt6 protein_coding protein_coding MGP_CASTEiJ_T0048855.1 MGP_CASTEiJ_G0023388.1 mouse_genomes_project 18 18059909 18122538 - MGP_CASTEiJ_P0048855 B4galt6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012922.1 MGP_CASTEiJ_G0011085.1 mouse_genomes_project 18 6643995 6644998 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0011138.1 MGP_CASTEiJ_G0009326.1 mouse_genomes_project 18 85056276 85056566 - Gm22014 misc_RNA misc_RNA MGP_CASTEiJ_T0011136.1 MGP_CASTEiJ_G0009324.1 mouse_genomes_project 18 73334950 73335056 + Gm26438 misc_RNA misc_RNA MGP_CASTEiJ_T0012941.1 MGP_CASTEiJ_G0011104.1 mouse_genomes_project 18 36919459 36919573 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048984.1 MGP_CASTEiJ_G0023445.1 mouse_genomes_project 18 32170739 32268837 + MGP_CASTEiJ_P0048984 Apc protein_coding protein_coding MGP_CASTEiJ_T0048985.1 MGP_CASTEiJ_G0023445.1 mouse_genomes_project 18 32170799 32273939 + MGP_CASTEiJ_P0048985 Apc protein_coding protein_coding MGP_CASTEiJ_T0048986.1 MGP_CASTEiJ_G0023445.1 mouse_genomes_project 18 32170799 32277521 + MGP_CASTEiJ_P0048986 Apc protein_coding protein_coding MGP_CASTEiJ_T0048987.1 MGP_CASTEiJ_G0023445.1 mouse_genomes_project 18 32170828 32254836 + Apc protein_coding retained_intron MGP_CASTEiJ_T0048988.1 MGP_CASTEiJ_G0023445.1 mouse_genomes_project 18 32171067 32228592 + MGP_CASTEiJ_P0048988 Apc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048989.1 MGP_CASTEiJ_G0023445.1 mouse_genomes_project 18 32199116 32215049 + Apc protein_coding retained_intron MGP_CASTEiJ_T0048990.1 MGP_CASTEiJ_G0023445.1 mouse_genomes_project 18 32199120 32242543 + MGP_CASTEiJ_P0048990 Apc protein_coding protein_coding MGP_CASTEiJ_T0048991.1 MGP_CASTEiJ_G0023445.1 mouse_genomes_project 18 32254599 32269657 + MGP_CASTEiJ_P0048991 Apc protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048992.1 MGP_CASTEiJ_G0023445.1 mouse_genomes_project 18 32255894 32266070 + Apc protein_coding processed_transcript MGP_CASTEiJ_T0049425.1 MGP_CASTEiJ_G0023620.1 mouse_genomes_project 18 45153562 45162642 - MGP_CASTEiJ_P0049425 Atg12 protein_coding protein_coding MGP_CASTEiJ_T0049372.1 MGP_CASTEiJ_G0023595.1 mouse_genomes_project 18 42124017 42133233 - MGP_CASTEiJ_P0049372 Spink1 protein_coding protein_coding MGP_CASTEiJ_T0009958.1 MGP_CASTEiJ_G0008146.1 mouse_genomes_project 18 5606216 5606320 - Gm26119 miRNA miRNA MGP_CASTEiJ_T0048698.1 MGP_CASTEiJ_G0023335.1 mouse_genomes_project 18 3080490 3110804 - Kif5b protein_coding retained_intron MGP_CASTEiJ_T0048699.1 MGP_CASTEiJ_G0023335.1 mouse_genomes_project 18 3080671 3137741 - MGP_CASTEiJ_P0048699 Kif5b protein_coding unknown_likely_coding MGP_CASTEiJ_T0048700.1 MGP_CASTEiJ_G0023335.1 mouse_genomes_project 18 3103787 3137815 - MGP_CASTEiJ_P0048700 Kif5b protein_coding unknown_likely_coding MGP_CASTEiJ_T0048701.1 MGP_CASTEiJ_G0023335.1 mouse_genomes_project 18 3109672 3120257 - Kif5b protein_coding retained_intron MGP_CASTEiJ_T0048702.1 MGP_CASTEiJ_G0023335.1 mouse_genomes_project 18 3110832 3138104 - MGP_CASTEiJ_P0048702 Kif5b protein_coding protein_coding MGP_CASTEiJ_T0048703.1 MGP_CASTEiJ_G0023335.1 mouse_genomes_project 18 3117093 3119266 - Kif5b protein_coding retained_intron MGP_CASTEiJ_T0048704.1 MGP_CASTEiJ_G0023335.1 mouse_genomes_project 18 3137947 3138802 - Kif5b protein_coding processed_transcript MGP_CASTEiJ_T0049147.1 MGP_CASTEiJ_G0023495.1 mouse_genomes_project 18 34950158 34952398 - MGP_CASTEiJ_P0049147 Ndufa2 protein_coding protein_coding MGP_CASTEiJ_T0049841.1 MGP_CASTEiJ_G0023750.1 mouse_genomes_project 18 70042805 70062813 - MGP_CASTEiJ_P0049841 4930503L19Rik protein_coding protein_coding MGP_CASTEiJ_T0048919.1 MGP_CASTEiJ_G0023413.1 mouse_genomes_project 18 22225233 22689613 + MGP_CASTEiJ_P0048919 Fhod3 protein_coding protein_coding MGP_CASTEiJ_T0048933.1 MGP_CASTEiJ_G0023417.1 mouse_genomes_project 18 28011773 28088792 + MGP_CASTEiJ_P0048933 Pik3c3 protein_coding protein_coding MGP_CASTEiJ_T0048934.1 MGP_CASTEiJ_G0023417.1 mouse_genomes_project 18 28011868 28110009 + MGP_CASTEiJ_P0048934 Pik3c3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048935.1 MGP_CASTEiJ_G0023417.1 mouse_genomes_project 18 28011896 28070077 + MGP_CASTEiJ_P0048935 Pik3c3 protein_coding protein_coding MGP_CASTEiJ_T0048936.1 MGP_CASTEiJ_G0023417.1 mouse_genomes_project 18 28011898 28083783 + MGP_CASTEiJ_P0048936 Pik3c3 protein_coding protein_coding MGP_CASTEiJ_T0048937.1 MGP_CASTEiJ_G0023417.1 mouse_genomes_project 18 28011953 28088786 + MGP_CASTEiJ_P0048937 Pik3c3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0012963.1 MGP_CASTEiJ_G0011126.1 mouse_genomes_project 18 90101829 90102154 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0009976.1 MGP_CASTEiJ_G0008164.1 mouse_genomes_project 18 40609908 40609971 + Gm22697 miRNA miRNA MGP_CASTEiJ_T0050024.1 MGP_CASTEiJ_G0023806.1 mouse_genomes_project 18 81084293 81105178 - MGP_CASTEiJ_P0050024 Sall3 protein_coding protein_coding MGP_CASTEiJ_T0012965.1 MGP_CASTEiJ_G0011128.1 mouse_genomes_project 18 90524294 90525254 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049067.1 MGP_CASTEiJ_G0023470.1 mouse_genomes_project 18 33688431 33707429 + MGP_CASTEiJ_P0049067 Paip2 protein_coding protein_coding MGP_CASTEiJ_T0049068.1 MGP_CASTEiJ_G0023470.1 mouse_genomes_project 18 33688438 33706593 + MGP_CASTEiJ_P0049068 Paip2 protein_coding protein_coding MGP_CASTEiJ_T0049069.1 MGP_CASTEiJ_G0023470.1 mouse_genomes_project 18 33688455 33706762 + MGP_CASTEiJ_P0049069 Paip2 protein_coding protein_coding MGP_CASTEiJ_T0049070.1 MGP_CASTEiJ_G0023470.1 mouse_genomes_project 18 33689051 33706638 + MGP_CASTEiJ_P0049070 Paip2 protein_coding protein_coding MGP_CASTEiJ_T0049071.1 MGP_CASTEiJ_G0023470.1 mouse_genomes_project 18 33700058 33707426 + MGP_CASTEiJ_P0049071 Paip2 protein_coding protein_coding MGP_CASTEiJ_T0049072.1 MGP_CASTEiJ_G0023470.1 mouse_genomes_project 18 33700509 33703650 + Paip2 protein_coding retained_intron MGP_CASTEiJ_T0049073.1 MGP_CASTEiJ_G0023470.1 mouse_genomes_project 18 33701210 33704099 + Paip2 protein_coding retained_intron MGP_CASTEiJ_T0049984.1 MGP_CASTEiJ_G0023796.1 mouse_genomes_project 18 80213929 80239235 - MGP_CASTEiJ_P0049984 Adnp2 protein_coding protein_coding MGP_CASTEiJ_T0006830.1 MGP_CASTEiJ_G0005631.1 mouse_genomes_project 18 29269614 29278428 + Gm26658 lincRNA lincRNA MGP_CASTEiJ_T0011139.1 MGP_CASTEiJ_G0009327.1 mouse_genomes_project 18 85159592 85159901 + Gm22819 misc_RNA misc_RNA MGP_CASTEiJ_T0009961.1 MGP_CASTEiJ_G0008149.1 mouse_genomes_project 18 7664356 7664424 - Mir133a-1 miRNA miRNA MGP_CASTEiJ_T0049289.1 MGP_CASTEiJ_G0023568.1 mouse_genomes_project 18 36412515 36424875 + MGP_CASTEiJ_P0049289 0610009O20Rik protein_coding protein_coding MGP_CASTEiJ_T0049034.1 MGP_CASTEiJ_G0023461.1 mouse_genomes_project 18 32874940 32881343 + MGP_CASTEiJ_P0049034 Egr1 protein_coding protein_coding MGP_CASTEiJ_T0049035.1 MGP_CASTEiJ_G0023461.1 mouse_genomes_project 18 32876320 32881315 + MGP_CASTEiJ_P0049035 Egr1 protein_coding protein_coding MGP_CASTEiJ_T0049578.1 MGP_CASTEiJ_G0023674.1 mouse_genomes_project 18 59705600 59710583 + MGP_CASTEiJ_P0049578 Rps14 protein_coding protein_coding MGP_CASTEiJ_T0049579.1 MGP_CASTEiJ_G0023674.1 mouse_genomes_project 18 59705756 59709457 + Rps14 protein_coding retained_intron MGP_CASTEiJ_T0049580.1 MGP_CASTEiJ_G0023674.1 mouse_genomes_project 18 59705771 59710578 + MGP_CASTEiJ_P0049580 Rps14 protein_coding protein_coding MGP_CASTEiJ_T0049581.1 MGP_CASTEiJ_G0023674.1 mouse_genomes_project 18 59706319 59709898 + MGP_CASTEiJ_P0049581 Rps14 protein_coding protein_coding MGP_CASTEiJ_T0049582.1 MGP_CASTEiJ_G0023674.1 mouse_genomes_project 18 59706806 59710494 + MGP_CASTEiJ_P0049582 Rps14 protein_coding protein_coding MGP_CASTEiJ_T0049583.1 MGP_CASTEiJ_G0023674.1 mouse_genomes_project 18 59707329 59710582 + MGP_CASTEiJ_P0049583 Rps14 protein_coding protein_coding MGP_CASTEiJ_T0049415.1 MGP_CASTEiJ_G0023614.1 mouse_genomes_project 18 44693396 44722560 - MGP_CASTEiJ_P0049415 Ccdc112 protein_coding protein_coding MGP_CASTEiJ_T0048831.1 MGP_CASTEiJ_G0023376.1 mouse_genomes_project 18 12159779 12262952 - MGP_CASTEiJ_P0048831 Kctd1 protein_coding protein_coding MGP_CASTEiJ_T0048832.1 MGP_CASTEiJ_G0023376.1 mouse_genomes_project 18 12159779 12360226 - MGP_CASTEiJ_P0048832 Kctd1 protein_coding protein_coding MGP_CASTEiJ_T0049646.1 MGP_CASTEiJ_G0023699.1 mouse_genomes_project 18 61618325 61622169 - MGP_CASTEiJ_P0049646 Spink7 protein_coding protein_coding MGP_CASTEiJ_T0048952.1 MGP_CASTEiJ_G0023427.1 mouse_genomes_project 18 29677194 29677746 - MGP_CASTEiJ_P0048952 Gm6665 protein_coding protein_coding MGP_CASTEiJ_T0016888.1 MGP_CASTEiJ_G0014680.1 mouse_genomes_project 18 56427538 56458624 - 1700066O22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016889.1 MGP_CASTEiJ_G0014680.1 mouse_genomes_project 18 56428840 56458600 - 1700066O22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016891.1 MGP_CASTEiJ_G0014680.1 mouse_genomes_project 18 56438411 56458611 - 1700066O22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016892.1 MGP_CASTEiJ_G0014680.1 mouse_genomes_project 18 56438422 56458588 - 1700066O22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016893.1 MGP_CASTEiJ_G0014680.1 mouse_genomes_project 18 56455289 56458595 - 1700066O22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0049979.1 MGP_CASTEiJ_G0023792.1 mouse_genomes_project 18 78371121 78372064 + MGP_CASTEiJ_P0049979 Gm6133 protein_coding protein_coding MGP_CASTEiJ_T0100804.1 MGP_CASTEiJ_G0037717.1 mouse_genomes_project 18 55037737 55037872 + Gm23555 snoRNA snoRNA MGP_CASTEiJ_T0050075.1 MGP_CASTEiJ_G0023822.1 mouse_genomes_project 18 89498235 89683022 + MGP_CASTEiJ_P0050075 Rttn protein_coding protein_coding MGP_CASTEiJ_T0048899.1 MGP_CASTEiJ_G0023403.1 mouse_genomes_project 18 21467707 21484661 + MGP_CASTEiJ_P0048899 Zfp35 protein_coding protein_coding MGP_CASTEiJ_T0009999.1 MGP_CASTEiJ_G0008187.1 mouse_genomes_project 18 89498476 89498557 + Mir6359 miRNA miRNA MGP_CASTEiJ_T0049906.1 MGP_CASTEiJ_G0023771.1 mouse_genomes_project 18 74817004 75116218 + MGP_CASTEiJ_P0049906 Dym protein_coding protein_coding MGP_CASTEiJ_T0049871.1 MGP_CASTEiJ_G0023758.1 mouse_genomes_project 18 73492970 73542922 - MGP_CASTEiJ_P0049871 Me2 protein_coding protein_coding MGP_CASTEiJ_T0049177.1 MGP_CASTEiJ_G0023510.1 mouse_genomes_project 18 35172607 35356123 + MGP_CASTEiJ_P0049177 protein_coding protein_coding MGP_CASTEiJ_T0100809.1 MGP_CASTEiJ_G0037722.1 mouse_genomes_project 18 74686217 74686338 - Gm24559 snoRNA snoRNA MGP_CASTEiJ_T0049693.1 MGP_CASTEiJ_G0023715.1 mouse_genomes_project 18 64663994 64715636 + MGP_CASTEiJ_P0049693 Malt1 protein_coding protein_coding MGP_CASTEiJ_T0049694.1 MGP_CASTEiJ_G0023715.1 mouse_genomes_project 18 64664203 64713239 + MGP_CASTEiJ_P0049694 Malt1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0003683.1 MGP_CASTEiJ_G0003317.1 mouse_genomes_project 18 35124891 35126149 - Gm37751 antisense antisense MGP_CASTEiJ_T0049473.1 MGP_CASTEiJ_G0023635.1 mouse_genomes_project 18 51119194 51146625 - MGP_CASTEiJ_P0049473 Lox protein_coding unknown_likely_coding MGP_CASTEiJ_T0049474.1 MGP_CASTEiJ_G0023635.1 mouse_genomes_project 18 51133935 51147601 - MGP_CASTEiJ_P0049474 Lox protein_coding protein_coding MGP_CASTEiJ_T0049475.1 MGP_CASTEiJ_G0023635.1 mouse_genomes_project 18 51135109 51147442 - MGP_CASTEiJ_P0049475 Lox protein_coding protein_coding MGP_CASTEiJ_T0049217.1 MGP_CASTEiJ_G0023542.1 mouse_genomes_project 18 35787314 35977834 + MGP_CASTEiJ_P0049217 Pcdhga1 protein_coding protein_coding MGP_CASTEiJ_T0049218.1 MGP_CASTEiJ_G0023542.1 mouse_genomes_project 18 35787314 35790562 + MGP_CASTEiJ_P0049218 Pcdhga1 protein_coding protein_coding MGP_CASTEiJ_T0099556.1 MGP_CASTEiJ_G0036469.1 mouse_genomes_project 18 565543 565607 - Gm23643 snRNA snRNA MGP_CASTEiJ_T0049339.1 MGP_CASTEiJ_G0023579.1 mouse_genomes_project 18 38525062 38525785 + MGP_CASTEiJ_P0049339 2900055J20Rik protein_coding protein_coding MGP_CASTEiJ_T0099557.1 MGP_CASTEiJ_G0036470.1 mouse_genomes_project 18 7021273 7021437 - Gm26244 snRNA snRNA MGP_CASTEiJ_T0048874.1 MGP_CASTEiJ_G0023397.1 mouse_genomes_project 18 20149799 20317625 - MGP_CASTEiJ_P0048874 Nol4 protein_coding protein_coding MGP_CASTEiJ_T0048875.1 MGP_CASTEiJ_G0023397.1 mouse_genomes_project 18 20149999 20498143 - MGP_CASTEiJ_P0048875 Nol4 protein_coding protein_coding MGP_CASTEiJ_T0048876.1 MGP_CASTEiJ_G0023397.1 mouse_genomes_project 18 20150256 20501160 - MGP_CASTEiJ_P0048876 Nol4 protein_coding protein_coding MGP_CASTEiJ_T0048877.1 MGP_CASTEiJ_G0023397.1 mouse_genomes_project 18 20150920 20317625 - MGP_CASTEiJ_P0048877 Nol4 protein_coding protein_coding MGP_CASTEiJ_T0048878.1 MGP_CASTEiJ_G0023397.1 mouse_genomes_project 18 20151146 20499595 - MGP_CASTEiJ_P0048878 Nol4 protein_coding protein_coding MGP_CASTEiJ_T0048879.1 MGP_CASTEiJ_G0023397.1 mouse_genomes_project 18 20151157 20499861 - MGP_CASTEiJ_P0048879 Nol4 protein_coding protein_coding MGP_CASTEiJ_T0048880.1 MGP_CASTEiJ_G0023397.1 mouse_genomes_project 18 20283094 20294529 - Nol4 protein_coding processed_transcript MGP_CASTEiJ_T0048881.1 MGP_CASTEiJ_G0023397.1 mouse_genomes_project 18 20379849 20499648 - MGP_CASTEiJ_P0048881 Nol4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048882.1 MGP_CASTEiJ_G0023397.1 mouse_genomes_project 18 20380172 20498426 - MGP_CASTEiJ_P0048882 Nol4 protein_coding protein_coding MGP_CASTEiJ_T0048883.1 MGP_CASTEiJ_G0023397.1 mouse_genomes_project 18 20390134 20420863 - Nol4 protein_coding processed_transcript MGP_CASTEiJ_T0049836.1 MGP_CASTEiJ_G0023748.1 mouse_genomes_project 18 69564223 69729654 - MGP_CASTEiJ_P0049836 Rab27b protein_coding protein_coding MGP_CASTEiJ_T0049837.1 MGP_CASTEiJ_G0023748.1 mouse_genomes_project 18 69568759 69632399 - MGP_CASTEiJ_P0049837 Rab27b protein_coding protein_coding MGP_CASTEiJ_T0049838.1 MGP_CASTEiJ_G0023748.1 mouse_genomes_project 18 69568759 69632399 - MGP_CASTEiJ_P0049838 Rab27b protein_coding protein_coding MGP_CASTEiJ_T0049839.1 MGP_CASTEiJ_G0023748.1 mouse_genomes_project 18 69726216 69729623 - Rab27b protein_coding retained_intron MGP_CASTEiJ_T0009991.1 MGP_CASTEiJ_G0008179.1 mouse_genomes_project 18 65542346 65542416 - Mir694 miRNA miRNA MGP_CASTEiJ_T0009995.1 MGP_CASTEiJ_G0008183.1 mouse_genomes_project 18 70093263 70093367 + Mir6357 miRNA miRNA MGP_CASTEiJ_T0003717.1 MGP_CASTEiJ_G0003342.1 mouse_genomes_project 18 85196313 85197225 - Gm16146 antisense antisense MGP_CASTEiJ_T0049044.1 MGP_CASTEiJ_G0023465.1 mouse_genomes_project 18 33269740 33275749 - MGP_CASTEiJ_P0049044 Lrrtm2 protein_coding protein_coding MGP_CASTEiJ_T0049418.1 MGP_CASTEiJ_G0023617.1 mouse_genomes_project 18 44978228 45013171 - MGP_CASTEiJ_P0049418 Tmed7 protein_coding protein_coding MGP_CASTEiJ_T0049420.1 MGP_CASTEiJ_G0023617.1 mouse_genomes_project 18 45002239 45013373 - Tmed7 protein_coding retained_intron MGP_CASTEiJ_T0049421.1 MGP_CASTEiJ_G0023617.1 mouse_genomes_project 18 45004330 45013392 - MGP_CASTEiJ_P0049421 Tmed7 protein_coding protein_coding MGP_CASTEiJ_T0049757.1 MGP_CASTEiJ_G0023738.1 mouse_genomes_project 18 67215377 67329521 + MGP_CASTEiJ_P0049757 Cep192 protein_coding protein_coding MGP_CASTEiJ_T0049685.1 MGP_CASTEiJ_G0023712.1 mouse_genomes_project 18 63668960 63813834 - MGP_CASTEiJ_P0049685 Atp8b1 protein_coding protein_coding MGP_CASTEiJ_T0049686.1 MGP_CASTEiJ_G0023712.1 mouse_genomes_project 18 63671157 63752803 - MGP_CASTEiJ_P0049686 Atp8b1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0000966.1 MGP_CASTEiJ_G0000902.1 mouse_genomes_project 18 44511502 44512103 - TEC TEC MGP_CASTEiJ_T0049294.1 MGP_CASTEiJ_G0023570.1 mouse_genomes_project 18 36461177 36487553 + MGP_CASTEiJ_P0049294 Rnf14 protein_coding protein_coding MGP_CASTEiJ_T0050044.1 MGP_CASTEiJ_G0023811.1 mouse_genomes_project 18 84273919 84354252 - MGP_CASTEiJ_P0050044 Tshz1 protein_coding protein_coding MGP_CASTEiJ_T0050045.1 MGP_CASTEiJ_G0023811.1 mouse_genomes_project 18 84274375 84354238 - Tshz1 protein_coding processed_transcript MGP_CASTEiJ_T0009977.1 MGP_CASTEiJ_G0008165.1 mouse_genomes_project 18 54793479 54793572 - Gm23335 miRNA miRNA MGP_CASTEiJ_T0009982.1 MGP_CASTEiJ_G0008170.1 mouse_genomes_project 18 59747482 59747570 + Mir5107 miRNA miRNA MGP_CASTEiJ_T0049652.1 MGP_CASTEiJ_G0023702.1 mouse_genomes_project 18 61686518 61687340 + MGP_CASTEiJ_P0049652 protein_coding protein_coding MGP_CASTEiJ_T0016858.1 MGP_CASTEiJ_G0014671.1 mouse_genomes_project 18 2342581 2452164 - Gm10125 processed_transcript antisense MGP_CASTEiJ_T0016859.1 MGP_CASTEiJ_G0014671.1 mouse_genomes_project 18 2368221 2370909 - Gm10125 processed_transcript retained_intron MGP_CASTEiJ_T0016860.1 MGP_CASTEiJ_G0014671.1 mouse_genomes_project 18 2375080 2452164 - Gm10125 processed_transcript processed_transcript MGP_CASTEiJ_T0016861.1 MGP_CASTEiJ_G0014671.1 mouse_genomes_project 18 2375156 2451962 - Gm10125 processed_transcript antisense MGP_CASTEiJ_T0016862.1 MGP_CASTEiJ_G0014671.1 mouse_genomes_project 18 2418533 2452153 - Gm10125 processed_transcript antisense MGP_CASTEiJ_T0016863.1 MGP_CASTEiJ_G0014671.1 mouse_genomes_project 18 2418533 2453272 - Gm10125 processed_transcript antisense MGP_CASTEiJ_T0049155.1 MGP_CASTEiJ_G0023500.1 mouse_genomes_project 18 34991326 34998796 + Hars2 protein_coding processed_transcript MGP_CASTEiJ_T0049156.1 MGP_CASTEiJ_G0023500.1 mouse_genomes_project 18 34991326 35000740 + MGP_CASTEiJ_P0049156 Hars2 protein_coding protein_coding MGP_CASTEiJ_T0049157.1 MGP_CASTEiJ_G0023500.1 mouse_genomes_project 18 34991549 34999872 + MGP_CASTEiJ_P0049157 Hars2 protein_coding protein_coding MGP_CASTEiJ_T0049158.1 MGP_CASTEiJ_G0023500.1 mouse_genomes_project 18 34991587 34994669 + Hars2 protein_coding retained_intron MGP_CASTEiJ_T0049159.1 MGP_CASTEiJ_G0023500.1 mouse_genomes_project 18 34995177 34996435 + Hars2 protein_coding retained_intron MGP_CASTEiJ_T0049160.1 MGP_CASTEiJ_G0023500.1 mouse_genomes_project 18 34995991 34998337 + Hars2 protein_coding retained_intron MGP_CASTEiJ_T0049161.1 MGP_CASTEiJ_G0023500.1 mouse_genomes_project 18 34998190 34999631 + Hars2 protein_coding retained_intron MGP_CASTEiJ_T0049099.1 MGP_CASTEiJ_G0023481.1 mouse_genomes_project 18 34094015 34148527 + MGP_CASTEiJ_P0049099 Psd2 protein_coding protein_coding MGP_CASTEiJ_T0049100.1 MGP_CASTEiJ_G0023481.1 mouse_genomes_project 18 34094250 34148527 + MGP_CASTEiJ_P0049100 Psd2 protein_coding protein_coding MGP_CASTEiJ_T0049101.1 MGP_CASTEiJ_G0023481.1 mouse_genomes_project 18 34094252 34148530 + MGP_CASTEiJ_P0049101 Psd2 protein_coding protein_coding MGP_CASTEiJ_T0049102.1 MGP_CASTEiJ_G0023481.1 mouse_genomes_project 18 34094287 34148395 + MGP_CASTEiJ_P0049102 Psd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049103.1 MGP_CASTEiJ_G0023481.1 mouse_genomes_project 18 34094290 34148489 + MGP_CASTEiJ_P0049103 Psd2 protein_coding protein_coding MGP_CASTEiJ_T0049104.1 MGP_CASTEiJ_G0023481.1 mouse_genomes_project 18 34116241 34138266 + Psd2 protein_coding retained_intron MGP_CASTEiJ_T0012947.1 MGP_CASTEiJ_G0011110.1 mouse_genomes_project 18 44879823 44880399 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003670.1 MGP_CASTEiJ_G0003308.1 mouse_genomes_project 18 3393054 3399837 + Gm28529 antisense antisense MGP_CASTEiJ_T0003671.1 MGP_CASTEiJ_G0003308.1 mouse_genomes_project 18 3393066 3394036 + Gm28529 antisense antisense MGP_CASTEiJ_T0050018.1 MGP_CASTEiJ_G0023804.1 mouse_genomes_project 18 80713414 80823318 - MGP_CASTEiJ_P0050018 Nfatc1 protein_coding protein_coding MGP_CASTEiJ_T0050019.1 MGP_CASTEiJ_G0023804.1 mouse_genomes_project 18 80713414 80823318 - MGP_CASTEiJ_P0050019 Nfatc1 protein_coding protein_coding MGP_CASTEiJ_T0050020.1 MGP_CASTEiJ_G0023804.1 mouse_genomes_project 18 80713414 80818475 - MGP_CASTEiJ_P0050020 Nfatc1 protein_coding protein_coding MGP_CASTEiJ_T0050021.1 MGP_CASTEiJ_G0023804.1 mouse_genomes_project 18 80756492 80818475 - MGP_CASTEiJ_P0050021 Nfatc1 protein_coding protein_coding MGP_CASTEiJ_T0049869.1 MGP_CASTEiJ_G0023757.1 mouse_genomes_project 18 73457310 73477329 - MGP_CASTEiJ_P0049869 Elac1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049870.1 MGP_CASTEiJ_G0023757.1 mouse_genomes_project 18 73457842 73477333 - MGP_CASTEiJ_P0049870 Elac1 protein_coding protein_coding MGP_CASTEiJ_T0049087.1 MGP_CASTEiJ_G0023477.1 mouse_genomes_project 18 33806922 33816672 - MGP_CASTEiJ_P0049087 Ecscr protein_coding protein_coding MGP_CASTEiJ_T0049088.1 MGP_CASTEiJ_G0023477.1 mouse_genomes_project 18 33806922 33817494 - MGP_CASTEiJ_P0049088 Ecscr protein_coding protein_coding MGP_CASTEiJ_T0049089.1 MGP_CASTEiJ_G0023477.1 mouse_genomes_project 18 33807109 33811416 - MGP_CASTEiJ_P0049089 Ecscr protein_coding protein_coding MGP_CASTEiJ_T0049090.1 MGP_CASTEiJ_G0023477.1 mouse_genomes_project 18 33807596 33811416 - MGP_CASTEiJ_P0049090 Ecscr protein_coding protein_coding MGP_CASTEiJ_T0049091.1 MGP_CASTEiJ_G0023477.1 mouse_genomes_project 18 33811373 33812013 - Ecscr protein_coding processed_transcript MGP_CASTEiJ_T0049092.1 MGP_CASTEiJ_G0023477.1 mouse_genomes_project 18 33811640 33817431 - Ecscr protein_coding processed_transcript MGP_CASTEiJ_T0006867.1 MGP_CASTEiJ_G0005660.1 mouse_genomes_project 18 81359587 81369485 - 4930594M17Rik lincRNA lincRNA MGP_CASTEiJ_T0016869.1 MGP_CASTEiJ_G0014673.1 mouse_genomes_project 18 35328302 35346934 - Gm10544 processed_transcript antisense MGP_CASTEiJ_T0016870.1 MGP_CASTEiJ_G0014673.1 mouse_genomes_project 18 35344039 35346918 - Gm10544 processed_transcript antisense MGP_CASTEiJ_T0016871.1 MGP_CASTEiJ_G0014673.1 mouse_genomes_project 18 35345197 35346926 - Gm10544 processed_transcript retained_intron MGP_CASTEiJ_T0012964.1 MGP_CASTEiJ_G0011127.1 mouse_genomes_project 18 90102392 90102851 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0003712.1 MGP_CASTEiJ_G0003338.1 mouse_genomes_project 18 69555111 69557805 + 4930448D08Rik antisense antisense MGP_CASTEiJ_T0012929.1 MGP_CASTEiJ_G0011092.1 mouse_genomes_project 18 14136234 14136877 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0050053.1 MGP_CASTEiJ_G0023814.1 mouse_genomes_project 18 84910158 84951612 - MGP_CASTEiJ_P0050053 Cndp1 protein_coding protein_coding MGP_CASTEiJ_T0050054.1 MGP_CASTEiJ_G0023814.1 mouse_genomes_project 18 84929836 84951574 - Cndp1 protein_coding retained_intron MGP_CASTEiJ_T0050055.1 MGP_CASTEiJ_G0023814.1 mouse_genomes_project 18 84931983 84951474 - Cndp1 protein_coding retained_intron MGP_CASTEiJ_T0098557.1 MGP_CASTEiJ_G0035488.1 mouse_genomes_project 18 73247791 73247939 - n-R5-8s1 rRNA rRNA MGP_CASTEiJ_T0006843.1 MGP_CASTEiJ_G0005642.1 mouse_genomes_project 18 35781004 35787264 + 3222401L13Rik lincRNA lincRNA MGP_CASTEiJ_T0006844.1 MGP_CASTEiJ_G0005642.1 mouse_genomes_project 18 35781462 35784280 + 3222401L13Rik lincRNA lincRNA MGP_CASTEiJ_T0050015.1 MGP_CASTEiJ_G0023803.1 mouse_genomes_project 18 80520582 80583477 - MGP_CASTEiJ_P0050015 Ctdp1 protein_coding protein_coding MGP_CASTEiJ_T0050016.1 MGP_CASTEiJ_G0023803.1 mouse_genomes_project 18 80520588 80553356 - MGP_CASTEiJ_P0050016 Ctdp1 protein_coding protein_coding MGP_CASTEiJ_T0050017.1 MGP_CASTEiJ_G0023803.1 mouse_genomes_project 18 80521359 80553285 - Ctdp1 protein_coding processed_transcript MGP_CASTEiJ_T0049738.1 MGP_CASTEiJ_G0023725.1 mouse_genomes_project 18 66195500 66198259 - MGP_CASTEiJ_P0049738 Mc4r protein_coding protein_coding MGP_CASTEiJ_T0049934.1 MGP_CASTEiJ_G0023778.1 mouse_genomes_project 18 76872940 76952841 - MGP_CASTEiJ_P0049934 Katnal2 protein_coding protein_coding MGP_CASTEiJ_T0049935.1 MGP_CASTEiJ_G0023778.1 mouse_genomes_project 18 76875148 76952903 - MGP_CASTEiJ_P0049935 Katnal2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049936.1 MGP_CASTEiJ_G0023778.1 mouse_genomes_project 18 76875148 76952860 - MGP_CASTEiJ_P0049936 Katnal2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049937.1 MGP_CASTEiJ_G0023778.1 mouse_genomes_project 18 76875156 76952860 - MGP_CASTEiJ_P0049937 Katnal2 protein_coding protein_coding MGP_CASTEiJ_T0049938.1 MGP_CASTEiJ_G0023778.1 mouse_genomes_project 18 76876440 76905996 - Katnal2 protein_coding processed_transcript MGP_CASTEiJ_T0049939.1 MGP_CASTEiJ_G0023778.1 mouse_genomes_project 18 76892331 76952913 - MGP_CASTEiJ_P0049939 Katnal2 protein_coding protein_coding MGP_CASTEiJ_T0049940.1 MGP_CASTEiJ_G0023778.1 mouse_genomes_project 18 76900847 76911166 - Katnal2 protein_coding processed_transcript MGP_CASTEiJ_T0049941.1 MGP_CASTEiJ_G0023778.1 mouse_genomes_project 18 76901589 76907325 - Katnal2 protein_coding retained_intron MGP_CASTEiJ_T0049942.1 MGP_CASTEiJ_G0023778.1 mouse_genomes_project 18 76909165 76952904 - MGP_CASTEiJ_P0049942 Katnal2 protein_coding protein_coding MGP_CASTEiJ_T0049943.1 MGP_CASTEiJ_G0023778.1 mouse_genomes_project 18 76909662 76952915 - MGP_CASTEiJ_P0049943 Katnal2 protein_coding protein_coding MGP_CASTEiJ_T0049145.1 MGP_CASTEiJ_G0023493.1 mouse_genomes_project 18 34932322 34933989 - MGP_CASTEiJ_P0049145 Cd14 protein_coding protein_coding MGP_CASTEiJ_T0100789.1 MGP_CASTEiJ_G0037702.1 mouse_genomes_project 18 24105102 24105233 + Gm23674 snoRNA snoRNA MGP_CASTEiJ_T0049655.1 MGP_CASTEiJ_G0023704.1 mouse_genomes_project 18 62031030 62054922 + MGP_CASTEiJ_P0049655 Napg protein_coding protein_coding MGP_CASTEiJ_T0049656.1 MGP_CASTEiJ_G0023704.1 mouse_genomes_project 18 62031055 62033853 + Napg protein_coding retained_intron MGP_CASTEiJ_T0049657.1 MGP_CASTEiJ_G0023704.1 mouse_genomes_project 18 62031095 62052404 + MGP_CASTEiJ_P0049657 Napg protein_coding protein_coding MGP_CASTEiJ_T0049658.1 MGP_CASTEiJ_G0023704.1 mouse_genomes_project 18 62031116 62035974 + Napg protein_coding retained_intron MGP_CASTEiJ_T0049659.1 MGP_CASTEiJ_G0023704.1 mouse_genomes_project 18 62033437 62036202 + Napg protein_coding retained_intron MGP_CASTEiJ_T0049660.1 MGP_CASTEiJ_G0023704.1 mouse_genomes_project 18 62039124 62046323 + Napg protein_coding processed_transcript MGP_CASTEiJ_T0049661.1 MGP_CASTEiJ_G0023704.1 mouse_genomes_project 18 62039207 62050042 + Napg protein_coding retained_intron MGP_CASTEiJ_T0049662.1 MGP_CASTEiJ_G0023704.1 mouse_genomes_project 18 62042705 62050497 + Napg protein_coding processed_transcript MGP_CASTEiJ_T0011123.1 MGP_CASTEiJ_G0009311.1 mouse_genomes_project 18 35011097 35011240 + Vaultrc5 misc_RNA misc_RNA MGP_CASTEiJ_T0048827.1 MGP_CASTEiJ_G0023373.1 mouse_genomes_project 18 11787460 11851625 - MGP_CASTEiJ_P0048827 Ss18 protein_coding protein_coding MGP_CASTEiJ_T0049239.1 MGP_CASTEiJ_G0023557.1 mouse_genomes_project 18 35886673 35977834 + MGP_CASTEiJ_P0049239 Pcdhga11 protein_coding protein_coding MGP_CASTEiJ_T0049476.1 MGP_CASTEiJ_G0023636.1 mouse_genomes_project 18 51232751 51261007 + MGP_CASTEiJ_P0049476 Zfp474 protein_coding protein_coding MGP_CASTEiJ_T0099584.1 MGP_CASTEiJ_G0036497.1 mouse_genomes_project 18 78554107 78554214 + Gm26430 snRNA snRNA MGP_CASTEiJ_T0016876.1 MGP_CASTEiJ_G0014675.1 mouse_genomes_project 18 35958566 35976161 + Gm38182 processed_transcript processed_transcript MGP_CASTEiJ_T0016877.1 MGP_CASTEiJ_G0014675.1 mouse_genomes_project 18 35958835 35976019 + Gm38182 processed_transcript processed_transcript MGP_CASTEiJ_T0016878.1 MGP_CASTEiJ_G0014675.1 mouse_genomes_project 18 35959046 35976340 + Gm38182 processed_transcript processed_transcript MGP_CASTEiJ_T0016879.1 MGP_CASTEiJ_G0014675.1 mouse_genomes_project 18 35959131 35976343 + Gm38182 processed_transcript processed_transcript MGP_CASTEiJ_T0016880.1 MGP_CASTEiJ_G0014675.1 mouse_genomes_project 18 35959425 35976341 + Gm38182 processed_transcript processed_transcript MGP_CASTEiJ_T0049469.1 MGP_CASTEiJ_G0023631.1 mouse_genomes_project 18 49135777 49136821 - MGP_CASTEiJ_P0049469 Hdhd1a protein_coding protein_coding MGP_CASTEiJ_T0048739.1 MGP_CASTEiJ_G0023347.1 mouse_genomes_project 18 6602457 6776186 + MGP_CASTEiJ_P0048739 Colec12 protein_coding protein_coding MGP_CASTEiJ_T0049349.1 MGP_CASTEiJ_G0023586.1 mouse_genomes_project 18 40505489 40566983 - MGP_CASTEiJ_P0049349 Lars protein_coding protein_coding MGP_CASTEiJ_T0100801.1 MGP_CASTEiJ_G0037714.1 mouse_genomes_project 18 44334951 44335078 + Gm26262 snoRNA snoRNA MGP_CASTEiJ_T0048970.1 MGP_CASTEiJ_G0023439.1 mouse_genomes_project 18 30725882 30756912 + MGP_CASTEiJ_P0048970 Wdr36 protein_coding protein_coding MGP_CASTEiJ_T0048971.1 MGP_CASTEiJ_G0023439.1 mouse_genomes_project 18 30725882 30756982 + MGP_CASTEiJ_P0048971 Wdr36 protein_coding protein_coding MGP_CASTEiJ_T0009963.1 MGP_CASTEiJ_G0008151.1 mouse_genomes_project 18 7666928 7667000 - Mir1a-2 miRNA miRNA MGP_CASTEiJ_T0011126.1 MGP_CASTEiJ_G0009314.1 mouse_genomes_project 18 39078323 39078628 - Gm22515 misc_RNA misc_RNA MGP_CASTEiJ_T0049181.1 MGP_CASTEiJ_G0023514.1 mouse_genomes_project 18 35204640 35207963 + Pcdha11 protein_coding retained_intron MGP_CASTEiJ_T0049182.1 MGP_CASTEiJ_G0023514.1 mouse_genomes_project 18 35204642 35329154 + Pcdha11 protein_coding retained_intron MGP_CASTEiJ_T0049183.1 MGP_CASTEiJ_G0023514.1 mouse_genomes_project 18 35204680 35356123 + MGP_CASTEiJ_P0049183 Pcdha11 protein_coding protein_coding MGP_CASTEiJ_T0049184.1 MGP_CASTEiJ_G0023514.1 mouse_genomes_project 18 35204760 35355854 + MGP_CASTEiJ_P0049184 Pcdha11 protein_coding protein_coding MGP_CASTEiJ_T0049185.1 MGP_CASTEiJ_G0023514.1 mouse_genomes_project 18 35206180 35353686 + MGP_CASTEiJ_P0049185 Pcdha11 protein_coding protein_coding MGP_CASTEiJ_T0048910.1 MGP_CASTEiJ_G0023407.1 mouse_genomes_project 18 21999545 22007328 + MGP_CASTEiJ_P0048910 2700062C07Rik protein_coding protein_coding MGP_CASTEiJ_T0049347.1 MGP_CASTEiJ_G0023584.1 mouse_genomes_project 18 40481237 40481531 + MGP_CASTEiJ_P0049347 Gm5689 protein_coding protein_coding MGP_CASTEiJ_T0003693.1 MGP_CASTEiJ_G0003327.1 mouse_genomes_project 18 37217363 37217921 - Gm15334 antisense antisense MGP_CASTEiJ_T0012924.1 MGP_CASTEiJ_G0011087.1 mouse_genomes_project 18 9547564 9548339 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048955.1 MGP_CASTEiJ_G0023430.1 mouse_genomes_project 18 29807467 29814116 - MGP_CASTEiJ_P0048955 Gpr17 protein_coding protein_coding MGP_CASTEiJ_T0012926.1 MGP_CASTEiJ_G0011089.1 mouse_genomes_project 18 9987231 9988531 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049489.1 MGP_CASTEiJ_G0023641.1 mouse_genomes_project 18 51904021 52058752 + MGP_CASTEiJ_P0049489 Snx24 protein_coding protein_coding MGP_CASTEiJ_T0049490.1 MGP_CASTEiJ_G0023641.1 mouse_genomes_project 18 51904128 52058752 + MGP_CASTEiJ_P0049490 Snx24 protein_coding protein_coding MGP_CASTEiJ_T0048671.1 MGP_CASTEiJ_G0023332.1 mouse_genomes_project 18 2037066 2172025 - MGP_CASTEiJ_P0048671 Zfp438 protein_coding protein_coding MGP_CASTEiJ_T0049593.1 MGP_CASTEiJ_G0023677.1 mouse_genomes_project 18 59852005 59858753 + MGP_CASTEiJ_P0049593 Arsi protein_coding protein_coding MGP_CASTEiJ_T0049965.1 MGP_CASTEiJ_G0023786.1 mouse_genomes_project 18 77776780 77785959 + MGP_CASTEiJ_P0049965 Atp5a1 protein_coding protein_coding MGP_CASTEiJ_T0049966.1 MGP_CASTEiJ_G0023786.1 mouse_genomes_project 18 77777017 77785956 + MGP_CASTEiJ_P0049966 Atp5a1 protein_coding protein_coding MGP_CASTEiJ_T0049967.1 MGP_CASTEiJ_G0023786.1 mouse_genomes_project 18 77777053 77785745 + MGP_CASTEiJ_P0049967 Atp5a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049968.1 MGP_CASTEiJ_G0023786.1 mouse_genomes_project 18 77782048 77784189 + Atp5a1 protein_coding retained_intron MGP_CASTEiJ_T0049969.1 MGP_CASTEiJ_G0023786.1 mouse_genomes_project 18 77782920 77784979 + Atp5a1 protein_coding retained_intron MGP_CASTEiJ_T0049213.1 MGP_CASTEiJ_G0023539.1 mouse_genomes_project 18 35675817 35684271 + MGP_CASTEiJ_P0049213 Pcdhb22 protein_coding protein_coding MGP_CASTEiJ_T0049214.1 MGP_CASTEiJ_G0023539.1 mouse_genomes_project 18 35676313 35681051 + MGP_CASTEiJ_P0049214 Pcdhb22 protein_coding protein_coding MGP_CASTEiJ_T0049033.1 MGP_CASTEiJ_G0023460.1 mouse_genomes_project 18 32853551 32860451 + MGP_CASTEiJ_P0049033 Reep2 protein_coding protein_coding MGP_CASTEiJ_T0006862.1 MGP_CASTEiJ_G0005655.1 mouse_genomes_project 18 67187498 67188644 - Gm26910 lincRNA lincRNA MGP_CASTEiJ_T0048705.1 MGP_CASTEiJ_G0023336.1 mouse_genomes_project 18 3337907 3417090 - MGP_CASTEiJ_P0048705 Epc1 protein_coding protein_coding MGP_CASTEiJ_T0048706.1 MGP_CASTEiJ_G0023336.1 mouse_genomes_project 18 3337909 3393768 - MGP_CASTEiJ_P0048706 Epc1 protein_coding protein_coding MGP_CASTEiJ_T0048707.1 MGP_CASTEiJ_G0023336.1 mouse_genomes_project 18 3341502 3343809 - MGP_CASTEiJ_P0048707 Epc1 protein_coding protein_coding MGP_CASTEiJ_T0048708.1 MGP_CASTEiJ_G0023336.1 mouse_genomes_project 18 3392071 3393768 - MGP_CASTEiJ_P0048708 Epc1 protein_coding protein_coding MGP_CASTEiJ_T0048856.1 MGP_CASTEiJ_G0023389.1 mouse_genomes_project 18 18209623 18289550 - MGP_CASTEiJ_P0048856 Trappc8 protein_coding protein_coding MGP_CASTEiJ_T0048857.1 MGP_CASTEiJ_G0023389.1 mouse_genomes_project 18 18209706 18289539 - MGP_CASTEiJ_P0048857 Trappc8 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048858.1 MGP_CASTEiJ_G0023389.1 mouse_genomes_project 18 18239800 18289550 - MGP_CASTEiJ_P0048858 Trappc8 protein_coding protein_coding MGP_CASTEiJ_T0049653.1 MGP_CASTEiJ_G0023703.1 mouse_genomes_project 18 61973757 62005861 + MGP_CASTEiJ_P0049653 Apcdd1 protein_coding protein_coding MGP_CASTEiJ_T0049654.1 MGP_CASTEiJ_G0023703.1 mouse_genomes_project 18 61973759 62005130 + MGP_CASTEiJ_P0049654 Apcdd1 protein_coding protein_coding MGP_CASTEiJ_T0048833.1 MGP_CASTEiJ_G0023377.1 mouse_genomes_project 18 12602923 12618681 - MGP_CASTEiJ_P0048833 Aqp4 protein_coding protein_coding MGP_CASTEiJ_T0049295.1 MGP_CASTEiJ_G0023571.1 mouse_genomes_project 18 36494775 36506578 - MGP_CASTEiJ_P0049295 Gnpda1 protein_coding protein_coding MGP_CASTEiJ_T0049296.1 MGP_CASTEiJ_G0023571.1 mouse_genomes_project 18 36495898 36499524 - Gnpda1 protein_coding processed_transcript MGP_CASTEiJ_T0049297.1 MGP_CASTEiJ_G0023571.1 mouse_genomes_project 18 36500550 36502533 - Gnpda1 protein_coding retained_intron MGP_CASTEiJ_T0049298.1 MGP_CASTEiJ_G0023571.1 mouse_genomes_project 18 36500642 36506484 - MGP_CASTEiJ_P0049298 Gnpda1 protein_coding protein_coding MGP_CASTEiJ_T0012955.1 MGP_CASTEiJ_G0011118.1 mouse_genomes_project 18 59710840 59711178 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048957.1 MGP_CASTEiJ_G0023431.1 mouse_genomes_project 18 29825611 29910678 - MGP_CASTEiJ_P0048957 Myo7b protein_coding protein_coding MGP_CASTEiJ_T0100787.1 MGP_CASTEiJ_G0037700.1 mouse_genomes_project 18 14317703 14317833 + Gm22470 snoRNA snoRNA MGP_CASTEiJ_T0099579.1 MGP_CASTEiJ_G0036492.1 mouse_genomes_project 18 62661630 62661745 + Gm24848 snRNA snRNA MGP_CASTEiJ_T0049985.1 MGP_CASTEiJ_G0023797.1 mouse_genomes_project 18 80285910 80301664 - MGP_CASTEiJ_P0049985 Rbfa protein_coding unknown_likely_coding MGP_CASTEiJ_T0049986.1 MGP_CASTEiJ_G0023797.1 mouse_genomes_project 18 80285913 80294309 - MGP_CASTEiJ_P0049986 Rbfa protein_coding protein_coding MGP_CASTEiJ_T0049342.1 MGP_CASTEiJ_G0023582.1 mouse_genomes_project 18 40267055 40281098 - MGP_CASTEiJ_P0049342 Grxcr2 protein_coding protein_coding MGP_CASTEiJ_T0009965.1 MGP_CASTEiJ_G0008153.1 mouse_genomes_project 18 9785608 9785693 + Mir1948 miRNA miRNA MGP_CASTEiJ_T0011114.1 MGP_CASTEiJ_G0009302.1 mouse_genomes_project 18 10061385 10061680 + Gm26407 misc_RNA misc_RNA MGP_CASTEiJ_T0048654.1 MGP_CASTEiJ_G0023330.1 mouse_genomes_project 18 1438982 1483170 + MGP_CASTEiJ_P0048654 9430020K01Rik protein_coding protein_coding MGP_CASTEiJ_T0049630.1 MGP_CASTEiJ_G0023689.1 mouse_genomes_project 18 60683594 60688165 + MGP_CASTEiJ_P0049630 Il17b protein_coding protein_coding MGP_CASTEiJ_T0049029.1 MGP_CASTEiJ_G0023457.1 mouse_genomes_project 18 32732076 32750340 - MGP_CASTEiJ_P0049029 Cdc25c protein_coding protein_coding MGP_CASTEiJ_T0048734.1 MGP_CASTEiJ_G0023343.1 mouse_genomes_project 18 6126404 6129748 + MGP_CASTEiJ_P0048734 Fzd8 protein_coding protein_coding MGP_CASTEiJ_T0049472.1 MGP_CASTEiJ_G0023634.1 mouse_genomes_project 18 51074054 51101471 + MGP_CASTEiJ_P0049472 Srfbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048922.1 MGP_CASTEiJ_G0023415.1 mouse_genomes_project 18 22727631 23029481 + MGP_CASTEiJ_P0048922 AW554918 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048923.1 MGP_CASTEiJ_G0023415.1 mouse_genomes_project 18 22727642 23033070 + MGP_CASTEiJ_P0048923 AW554918 protein_coding protein_coding MGP_CASTEiJ_T0048924.1 MGP_CASTEiJ_G0023415.1 mouse_genomes_project 18 22727646 22748012 + AW554918 protein_coding processed_transcript MGP_CASTEiJ_T0048925.1 MGP_CASTEiJ_G0023415.1 mouse_genomes_project 18 22727652 22848474 + AW554918 protein_coding processed_transcript MGP_CASTEiJ_T0048926.1 MGP_CASTEiJ_G0023415.1 mouse_genomes_project 18 22727652 23033075 + MGP_CASTEiJ_P0048926 AW554918 protein_coding protein_coding MGP_CASTEiJ_T0048927.1 MGP_CASTEiJ_G0023415.1 mouse_genomes_project 18 22727652 23033075 + MGP_CASTEiJ_P0048927 AW554918 protein_coding protein_coding MGP_CASTEiJ_T0048928.1 MGP_CASTEiJ_G0023415.1 mouse_genomes_project 18 22727655 23029652 + MGP_CASTEiJ_P0048928 AW554918 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048929.1 MGP_CASTEiJ_G0023415.1 mouse_genomes_project 18 22787901 23029848 + MGP_CASTEiJ_P0048929 AW554918 protein_coding protein_coding MGP_CASTEiJ_T0016864.1 MGP_CASTEiJ_G0014672.1 mouse_genomes_project 18 33642065 33648448 + Snhg4 processed_transcript lincRNA MGP_CASTEiJ_T0016865.1 MGP_CASTEiJ_G0014672.1 mouse_genomes_project 18 33642104 33643459 + Snhg4 processed_transcript retained_intron MGP_CASTEiJ_T0016866.1 MGP_CASTEiJ_G0014672.1 mouse_genomes_project 18 33642106 33645924 + Snhg4 processed_transcript retained_intron MGP_CASTEiJ_T0016867.1 MGP_CASTEiJ_G0014672.1 mouse_genomes_project 18 33642116 33644655 + Snhg4 processed_transcript retained_intron MGP_CASTEiJ_T0016868.1 MGP_CASTEiJ_G0014672.1 mouse_genomes_project 18 33644829 33646090 + Snhg4 processed_transcript retained_intron MGP_CASTEiJ_T0012927.1 MGP_CASTEiJ_G0011090.1 mouse_genomes_project 18 9987231 9988347 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0050012.1 MGP_CASTEiJ_G0023802.1 mouse_genomes_project 18 80394525 80469060 - MGP_CASTEiJ_P0050012 Kcng2 protein_coding protein_coding MGP_CASTEiJ_T0050013.1 MGP_CASTEiJ_G0023802.1 mouse_genomes_project 18 80423684 80468142 - MGP_CASTEiJ_P0050013 Kcng2 protein_coding protein_coding MGP_CASTEiJ_T0050014.1 MGP_CASTEiJ_G0023802.1 mouse_genomes_project 18 80423949 80468456 - MGP_CASTEiJ_P0050014 Kcng2 protein_coding protein_coding MGP_CASTEiJ_T0049188.1 MGP_CASTEiJ_G0023517.1 mouse_genomes_project 18 35312005 35356123 + MGP_CASTEiJ_P0049188 Pcdhac2 protein_coding protein_coding MGP_CASTEiJ_T0049237.1 MGP_CASTEiJ_G0023555.1 mouse_genomes_project 18 35875697 35977834 + MGP_CASTEiJ_P0049237 Pcdhga10 protein_coding protein_coding MGP_CASTEiJ_T0049634.1 MGP_CASTEiJ_G0023691.1 mouse_genomes_project 18 60711050 60722646 - MGP_CASTEiJ_P0049634 Grpel2 protein_coding protein_coding MGP_CASTEiJ_T0049151.1 MGP_CASTEiJ_G0023498.1 mouse_genomes_project 18 34971547 34975078 - Dnd1 protein_coding retained_intron MGP_CASTEiJ_T0049152.1 MGP_CASTEiJ_G0023498.1 mouse_genomes_project 18 34971549 34975062 - MGP_CASTEiJ_P0049152 Dnd1 protein_coding protein_coding MGP_CASTEiJ_T0049153.1 MGP_CASTEiJ_G0023498.1 mouse_genomes_project 18 34971551 34975062 - Dnd1 protein_coding retained_intron MGP_CASTEiJ_T0006834.1 MGP_CASTEiJ_G0005635.1 mouse_genomes_project 18 30240436 30263411 - A830052D11Rik lincRNA lincRNA MGP_CASTEiJ_T0048930.1 MGP_CASTEiJ_G0023416.1 mouse_genomes_project 18 23043396 23325804 - MGP_CASTEiJ_P0048930 Celf4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048931.1 MGP_CASTEiJ_G0023416.1 mouse_genomes_project 18 23043409 23326238 - MGP_CASTEiJ_P0048931 Celf4 protein_coding protein_coding MGP_CASTEiJ_T0048932.1 MGP_CASTEiJ_G0023416.1 mouse_genomes_project 18 23043409 23326238 - MGP_CASTEiJ_P0048932 Celf4 protein_coding protein_coding MGP_CASTEiJ_T0101562.1 MGP_CASTEiJ_G0038439.1 mouse_genomes_project 18 75117962 75128267 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101563.1 MGP_CASTEiJ_G0038439.1 mouse_genomes_project 18 75118345 75118603 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0101564.1 MGP_CASTEiJ_G0038439.1 mouse_genomes_project 18 75126670 75128279 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0012919.1 MGP_CASTEiJ_G0011082.1 mouse_genomes_project 18 4469835 4470250 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048917.1 MGP_CASTEiJ_G0023411.1 mouse_genomes_project 18 22166804 22217177 + MGP_CASTEiJ_P0048917 Mocos protein_coding protein_coding MGP_CASTEiJ_T0049386.1 MGP_CASTEiJ_G0023604.1 mouse_genomes_project 18 42603160 42609093 - MGP_CASTEiJ_P0049386 Spink11 protein_coding protein_coding MGP_CASTEiJ_T0048735.1 MGP_CASTEiJ_G0023344.1 mouse_genomes_project 18 6187681 6191951 - MGP_CASTEiJ_P0048735 Gjd4 protein_coding protein_coding MGP_CASTEiJ_T0049619.1 MGP_CASTEiJ_G0023687.1 mouse_genomes_project 18 60473326 60517697 - MGP_CASTEiJ_P0049619 Arhgef37 protein_coding protein_coding MGP_CASTEiJ_T0048770.1 MGP_CASTEiJ_G0023357.1 mouse_genomes_project 18 7959282 7992429 + MGP_CASTEiJ_P0048770 Gata6 protein_coding protein_coding MGP_CASTEiJ_T0048771.1 MGP_CASTEiJ_G0023357.1 mouse_genomes_project 18 7961138 8017708 + MGP_CASTEiJ_P0048771 Gata6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012937.1 MGP_CASTEiJ_G0011100.1 mouse_genomes_project 18 33870072 33870423 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0048774.1 MGP_CASTEiJ_G0023359.1 mouse_genomes_project 18 8842258 8986722 + MGP_CASTEiJ_P0048774 Cables1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048775.1 MGP_CASTEiJ_G0023359.1 mouse_genomes_project 18 8842291 8957913 + MGP_CASTEiJ_P0048775 Cables1 protein_coding protein_coding MGP_CASTEiJ_T0003715.1 MGP_CASTEiJ_G0003340.1 mouse_genomes_project 18 80424342 80427739 + Gm26676 antisense antisense MGP_CASTEiJ_T0012962.1 MGP_CASTEiJ_G0011125.1 mouse_genomes_project 18 84964845 84965743 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049976.1 MGP_CASTEiJ_G0023791.1 mouse_genomes_project 18 78150668 78212683 - MGP_CASTEiJ_P0049976 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049977.1 MGP_CASTEiJ_G0023791.1 mouse_genomes_project 18 78150668 78222903 - MGP_CASTEiJ_P0049977 protein_coding protein_coding MGP_CASTEiJ_T0049978.1 MGP_CASTEiJ_G0023791.1 mouse_genomes_project 18 78189573 78212175 - MGP_CASTEiJ_P0049978 protein_coding protein_coding MGP_CASTEiJ_T0003689.1 MGP_CASTEiJ_G0003323.1 mouse_genomes_project 18 35787473 35788154 - Gm37118 antisense antisense MGP_CASTEiJ_T0049230.1 MGP_CASTEiJ_G0023551.1 mouse_genomes_project 18 35847296 35977831 + MGP_CASTEiJ_P0049230 Pcdhgb4 protein_coding protein_coding MGP_CASTEiJ_T0049231.1 MGP_CASTEiJ_G0023551.1 mouse_genomes_project 18 35847310 35856325 + Pcdhgb4 protein_coding processed_transcript MGP_CASTEiJ_T0049853.1 MGP_CASTEiJ_G0023753.1 mouse_genomes_project 18 70151031 70214087 + MGP_CASTEiJ_P0049853 Mbd2 protein_coding protein_coding MGP_CASTEiJ_T0049854.1 MGP_CASTEiJ_G0023753.1 mouse_genomes_project 18 70151176 70167970 + MGP_CASTEiJ_P0049854 Mbd2 protein_coding protein_coding MGP_CASTEiJ_T0049855.1 MGP_CASTEiJ_G0023753.1 mouse_genomes_project 18 70151619 70213997 + MGP_CASTEiJ_P0049855 Mbd2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049856.1 MGP_CASTEiJ_G0023753.1 mouse_genomes_project 18 70165848 70208954 + MGP_CASTEiJ_P0049856 Mbd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049857.1 MGP_CASTEiJ_G0023753.1 mouse_genomes_project 18 70178277 70202006 + Mbd2 protein_coding retained_intron MGP_CASTEiJ_T0049858.1 MGP_CASTEiJ_G0023753.1 mouse_genomes_project 18 70202545 70213733 + Mbd2 protein_coding retained_intron MGP_CASTEiJ_T0100784.1 MGP_CASTEiJ_G0037697.1 mouse_genomes_project 18 7423515 7423633 - Gm24894 snoRNA snoRNA MGP_CASTEiJ_T0006819.1 MGP_CASTEiJ_G0005624.1 mouse_genomes_project 18 1615742 1658004 + lincRNA lincRNA MGP_CASTEiJ_T0016896.1 MGP_CASTEiJ_G0014681.1 mouse_genomes_project 18 65622528 65650770 + Gm15958 processed_transcript processed_transcript MGP_CASTEiJ_T0016897.1 MGP_CASTEiJ_G0014681.1 mouse_genomes_project 18 65623138 65643553 + Gm15958 processed_transcript processed_transcript MGP_CASTEiJ_T0100808.1 MGP_CASTEiJ_G0037721.1 mouse_genomes_project 18 66850059 66850193 + Gm24900 snoRNA snoRNA MGP_CASTEiJ_T0011120.1 MGP_CASTEiJ_G0009308.1 mouse_genomes_project 18 22282403 22282680 + Gm24294 misc_RNA misc_RNA MGP_CASTEiJ_T0049220.1 MGP_CASTEiJ_G0023544.1 mouse_genomes_project 18 35800203 35977834 + MGP_CASTEiJ_P0049220 Pcdhga3 protein_coding protein_coding MGP_CASTEiJ_T0100790.1 MGP_CASTEiJ_G0037703.1 mouse_genomes_project 18 25991326 25991458 + Gm24246 snoRNA snoRNA MGP_CASTEiJ_T0049674.1 MGP_CASTEiJ_G0023706.1 mouse_genomes_project 18 62742277 62773456 - MGP_CASTEiJ_P0049674 Txnl1 protein_coding protein_coding MGP_CASTEiJ_T0049744.1 MGP_CASTEiJ_G0023729.1 mouse_genomes_project 18 66722622 66751125 + MGP_CASTEiJ_P0049744 Cidea protein_coding protein_coding MGP_CASTEiJ_T0048653.1 MGP_CASTEiJ_G0023329.1 mouse_genomes_project 18 1188188 1212566 + MGP_CASTEiJ_P0048653 Mtpap protein_coding protein_coding MGP_CASTEiJ_T0012960.1 MGP_CASTEiJ_G0011123.1 mouse_genomes_project 18 77151381 77152355 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049224.1 MGP_CASTEiJ_G0023547.1 mouse_genomes_project 18 35815771 35977834 + MGP_CASTEiJ_P0049224 Pcdhgb2 protein_coding protein_coding MGP_CASTEiJ_T0049225.1 MGP_CASTEiJ_G0023547.1 mouse_genomes_project 18 35815778 35818350 + Pcdhgb2 protein_coding retained_intron MGP_CASTEiJ_T0048953.1 MGP_CASTEiJ_G0023428.1 mouse_genomes_project 18 29770725 29773549 - MGP_CASTEiJ_P0048953 Sft2d3 protein_coding protein_coding MGP_CASTEiJ_T0048645.1 MGP_CASTEiJ_G0023326.1 mouse_genomes_project 18 315997 324361 + MGP_CASTEiJ_P0048645 Bambi protein_coding protein_coding MGP_CASTEiJ_T0049727.1 MGP_CASTEiJ_G0023722.1 mouse_genomes_project 18 65287357 65309197 - MGP_CASTEiJ_P0049727 Lman1 protein_coding protein_coding MGP_CASTEiJ_T0049728.1 MGP_CASTEiJ_G0023722.1 mouse_genomes_project 18 65289811 65309181 - MGP_CASTEiJ_P0049728 Lman1 protein_coding protein_coding MGP_CASTEiJ_T0049729.1 MGP_CASTEiJ_G0023722.1 mouse_genomes_project 18 65295611 65301461 - Lman1 protein_coding processed_transcript MGP_CASTEiJ_T0049730.1 MGP_CASTEiJ_G0023722.1 mouse_genomes_project 18 65297721 65300231 - Lman1 protein_coding retained_intron MGP_CASTEiJ_T0049731.1 MGP_CASTEiJ_G0023722.1 mouse_genomes_project 18 65299708 65330762 - MGP_CASTEiJ_P0049731 Lman1 protein_coding protein_coding MGP_CASTEiJ_T0049732.1 MGP_CASTEiJ_G0023722.1 mouse_genomes_project 18 65300161 65328046 - Lman1 protein_coding processed_transcript MGP_CASTEiJ_T0049197.1 MGP_CASTEiJ_G0023524.1 mouse_genomes_project 18 35508789 35514618 + MGP_CASTEiJ_P0049197 Pcdhb7 protein_coding protein_coding MGP_CASTEiJ_T0048709.1 MGP_CASTEiJ_G0023337.1 mouse_genomes_project 18 3491035 3529090 + MGP_CASTEiJ_P0048709 4921524L21Rik protein_coding protein_coding MGP_CASTEiJ_T0049677.1 MGP_CASTEiJ_G0023708.1 mouse_genomes_project 18 63374246 63398021 + MGP_CASTEiJ_P0049677 St8sia3 protein_coding protein_coding MGP_CASTEiJ_T0049678.1 MGP_CASTEiJ_G0023708.1 mouse_genomes_project 18 63387330 63391865 + MGP_CASTEiJ_P0049678 St8sia3 protein_coding protein_coding MGP_CASTEiJ_T0049679.1 MGP_CASTEiJ_G0023708.1 mouse_genomes_project 18 63387511 63391722 + St8sia3 protein_coding processed_transcript MGP_CASTEiJ_T0049680.1 MGP_CASTEiJ_G0023708.1 mouse_genomes_project 18 63388698 63391794 + St8sia3 protein_coding retained_intron MGP_CASTEiJ_T0049150.1 MGP_CASTEiJ_G0023497.1 mouse_genomes_project 18 34968099 34971585 + MGP_CASTEiJ_P0049150 Wdr55 protein_coding protein_coding MGP_CASTEiJ_T0003701.1 MGP_CASTEiJ_G0003333.1 mouse_genomes_project 18 55649606 55685170 + Gm15345 antisense antisense MGP_CASTEiJ_T0009990.1 MGP_CASTEiJ_G0008178.1 mouse_genomes_project 18 64462703 64462769 + Mir122 miRNA miRNA MGP_CASTEiJ_T0049606.1 MGP_CASTEiJ_G0023682.1 mouse_genomes_project 18 60057617 60084704 + MGP_CASTEiJ_P0049606 Csf1r protein_coding protein_coding MGP_CASTEiJ_T0049607.1 MGP_CASTEiJ_G0023682.1 mouse_genomes_project 18 60057900 60085719 + MGP_CASTEiJ_P0049607 Csf1r protein_coding protein_coding MGP_CASTEiJ_T0049912.1 MGP_CASTEiJ_G0023773.1 mouse_genomes_project 18 75283160 75573994 - MGP_CASTEiJ_P0049912 Ctif protein_coding protein_coding MGP_CASTEiJ_T0049913.1 MGP_CASTEiJ_G0023773.1 mouse_genomes_project 18 75303951 75513519 - MGP_CASTEiJ_P0049913 Ctif protein_coding unknown_likely_coding MGP_CASTEiJ_T0049982.1 MGP_CASTEiJ_G0023794.1 mouse_genomes_project 18 80127867 80207290 + MGP_CASTEiJ_P0049982 Pard6g protein_coding protein_coding MGP_CASTEiJ_T0049422.1 MGP_CASTEiJ_G0023618.1 mouse_genomes_project 18 45013560 45032011 + MGP_CASTEiJ_P0049422 protein_coding protein_coding MGP_CASTEiJ_T0049423.1 MGP_CASTEiJ_G0023618.1 mouse_genomes_project 18 45013579 45024037 + MGP_CASTEiJ_P0049423 protein_coding protein_coding MGP_CASTEiJ_T0012948.1 MGP_CASTEiJ_G0011111.1 mouse_genomes_project 18 47135140 47136146 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049429.1 MGP_CASTEiJ_G0023623.1 mouse_genomes_project 18 45347458 45355539 + MGP_CASTEiJ_P0049429 Arl14epl protein_coding protein_coding MGP_CASTEiJ_T0006850.1 MGP_CASTEiJ_G0005647.1 mouse_genomes_project 18 53745936 53752291 + Gm26742 lincRNA lincRNA MGP_CASTEiJ_T0006821.1 MGP_CASTEiJ_G0005626.1 mouse_genomes_project 18 7583272 7588264 + 4930563E18Rik lincRNA lincRNA MGP_CASTEiJ_T0049950.1 MGP_CASTEiJ_G0023782.1 mouse_genomes_project 18 77218369 77409760 + MGP_CASTEiJ_P0049950 Loxhd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049951.1 MGP_CASTEiJ_G0023782.1 mouse_genomes_project 18 77218549 77398640 + MGP_CASTEiJ_P0049951 Loxhd1 protein_coding protein_coding MGP_CASTEiJ_T0049952.1 MGP_CASTEiJ_G0023782.1 mouse_genomes_project 18 77246845 77326417 + MGP_CASTEiJ_P0049952 Loxhd1 protein_coding protein_coding MGP_CASTEiJ_T0049953.1 MGP_CASTEiJ_G0023782.1 mouse_genomes_project 18 77274206 77363001 + MGP_CASTEiJ_P0049953 Loxhd1 protein_coding protein_coding MGP_CASTEiJ_T0049954.1 MGP_CASTEiJ_G0023782.1 mouse_genomes_project 18 77319200 77398724 + MGP_CASTEiJ_P0049954 Loxhd1 protein_coding protein_coding MGP_CASTEiJ_T0049955.1 MGP_CASTEiJ_G0023782.1 mouse_genomes_project 18 77361017 77398270 + MGP_CASTEiJ_P0049955 Loxhd1 protein_coding protein_coding MGP_CASTEiJ_T0049211.1 MGP_CASTEiJ_G0023537.1 mouse_genomes_project 18 35659341 35664681 + MGP_CASTEiJ_P0049211 Pcdhb20 protein_coding protein_coding MGP_CASTEiJ_T0009975.1 MGP_CASTEiJ_G0008163.1 mouse_genomes_project 18 39648066 39648157 - Gm44476 miRNA miRNA MGP_CASTEiJ_T0048757.1 MGP_CASTEiJ_G0023353.1 mouse_genomes_project 18 7440090 7471319 - Esco1 protein_coding processed_transcript MGP_CASTEiJ_T0048758.1 MGP_CASTEiJ_G0023353.1 mouse_genomes_project 18 7440099 7489562 - MGP_CASTEiJ_P0048758 Esco1 protein_coding protein_coding MGP_CASTEiJ_T0048759.1 MGP_CASTEiJ_G0023353.1 mouse_genomes_project 18 7440107 7489785 - MGP_CASTEiJ_P0048759 Esco1 protein_coding protein_coding MGP_CASTEiJ_T0048760.1 MGP_CASTEiJ_G0023353.1 mouse_genomes_project 18 7440107 7489542 - MGP_CASTEiJ_P0048760 Esco1 protein_coding protein_coding MGP_CASTEiJ_T0048761.1 MGP_CASTEiJ_G0023353.1 mouse_genomes_project 18 7440208 7489542 - Esco1 protein_coding processed_transcript MGP_CASTEiJ_T0049116.1 MGP_CASTEiJ_G0023485.1 mouse_genomes_project 18 34577869 34633883 - MGP_CASTEiJ_P0049116 Pfdn1 protein_coding protein_coding MGP_CASTEiJ_T0048719.1 MGP_CASTEiJ_G0023341.1 mouse_genomes_project 18 4238570 4518368 - MGP_CASTEiJ_P0048719 Mpp7 protein_coding protein_coding MGP_CASTEiJ_T0100788.1 MGP_CASTEiJ_G0037701.1 mouse_genomes_project 18 20610627 20610754 + Gm22495 snoRNA snoRNA MGP_CASTEiJ_T0049252.1 MGP_CASTEiJ_G0023562.1 mouse_genomes_project 18 35979561 36075341 - MGP_CASTEiJ_P0049252 Diaph1 protein_coding protein_coding MGP_CASTEiJ_T0049253.1 MGP_CASTEiJ_G0023562.1 mouse_genomes_project 18 35979563 36075246 - MGP_CASTEiJ_P0049253 Diaph1 protein_coding protein_coding MGP_CASTEiJ_T0049254.1 MGP_CASTEiJ_G0023562.1 mouse_genomes_project 18 35979563 36075288 - MGP_CASTEiJ_P0049254 Diaph1 protein_coding protein_coding MGP_CASTEiJ_T0049255.1 MGP_CASTEiJ_G0023562.1 mouse_genomes_project 18 35979565 36045630 - MGP_CASTEiJ_P0049255 Diaph1 protein_coding protein_coding MGP_CASTEiJ_T0049256.1 MGP_CASTEiJ_G0023562.1 mouse_genomes_project 18 35980784 36075276 - MGP_CASTEiJ_P0049256 Diaph1 protein_coding protein_coding MGP_CASTEiJ_T0049257.1 MGP_CASTEiJ_G0023562.1 mouse_genomes_project 18 35981060 35989357 - Diaph1 protein_coding processed_transcript MGP_CASTEiJ_T0049258.1 MGP_CASTEiJ_G0023562.1 mouse_genomes_project 18 35990390 36075183 - MGP_CASTEiJ_P0049258 Diaph1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049259.1 MGP_CASTEiJ_G0023562.1 mouse_genomes_project 18 35991458 35992118 - Diaph1 protein_coding retained_intron MGP_CASTEiJ_T0049260.1 MGP_CASTEiJ_G0023562.1 mouse_genomes_project 18 36034113 36035900 - Diaph1 protein_coding retained_intron MGP_CASTEiJ_T0048897.1 MGP_CASTEiJ_G0023401.1 mouse_genomes_project 18 21440827 21450806 + MGP_CASTEiJ_P0048897 Zfp397 protein_coding protein_coding MGP_CASTEiJ_T0100815.1 MGP_CASTEiJ_G0037728.1 mouse_genomes_project 18 82185137 82185268 + Gm26012 snoRNA snoRNA MGP_CASTEiJ_T0098853.1 MGP_CASTEiJ_G0035778.1 mouse_genomes_project 18 2426350 2428604 - Gm26575 sense_intronic sense_intronic MGP_CASTEiJ_T0012939.1 MGP_CASTEiJ_G0011102.1 mouse_genomes_project 18 35472337 35473595 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0012957.1 MGP_CASTEiJ_G0011120.1 mouse_genomes_project 18 63760023 63761442 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049414.1 MGP_CASTEiJ_G0023613.1 mouse_genomes_project 18 44649105 44692082 - MGP_CASTEiJ_P0049414 Pggt1b protein_coding protein_coding MGP_CASTEiJ_T0049032.1 MGP_CASTEiJ_G0023459.1 mouse_genomes_project 18 32776936 32852331 + MGP_CASTEiJ_P0049032 Kdm3b protein_coding protein_coding MGP_CASTEiJ_T0099568.1 MGP_CASTEiJ_G0036481.1 mouse_genomes_project 18 44890087 44890181 - Gm24076 snRNA snRNA MGP_CASTEiJ_T0049973.1 MGP_CASTEiJ_G0023790.1 mouse_genomes_project 18 78104075 78127297 - MGP_CASTEiJ_P0049973 Slc14a1 protein_coding protein_coding MGP_CASTEiJ_T0049974.1 MGP_CASTEiJ_G0023790.1 mouse_genomes_project 18 78105620 78145787 - MGP_CASTEiJ_P0049974 Slc14a1 protein_coding protein_coding MGP_CASTEiJ_T0049975.1 MGP_CASTEiJ_G0023790.1 mouse_genomes_project 18 78105620 78127202 - MGP_CASTEiJ_P0049975 Slc14a1 protein_coding protein_coding MGP_CASTEiJ_T0049690.1 MGP_CASTEiJ_G0023714.1 mouse_genomes_project 18 64482415 64629622 - MGP_CASTEiJ_P0049690 Alpk2 protein_coding protein_coding MGP_CASTEiJ_T0049691.1 MGP_CASTEiJ_G0023714.1 mouse_genomes_project 18 64492394 64580529 - MGP_CASTEiJ_P0049691 Alpk2 protein_coding protein_coding MGP_CASTEiJ_T0049692.1 MGP_CASTEiJ_G0023714.1 mouse_genomes_project 18 64594150 64629623 - Alpk2 protein_coding processed_transcript MGP_CASTEiJ_T0049389.1 MGP_CASTEiJ_G0023607.1 mouse_genomes_project 18 42733028 42756494 + MGP_CASTEiJ_P0049389 Myot protein_coding protein_coding MGP_CASTEiJ_T0049390.1 MGP_CASTEiJ_G0023607.1 mouse_genomes_project 18 42733028 42756494 + MGP_CASTEiJ_P0049390 Myot protein_coding protein_coding MGP_CASTEiJ_T0048825.1 MGP_CASTEiJ_G0023371.1 mouse_genomes_project 18 10804832 11094415 - MGP_CASTEiJ_P0048825 Zfp521 protein_coding protein_coding MGP_CASTEiJ_T0048946.1 MGP_CASTEiJ_G0023423.1 mouse_genomes_project 18 29482839 29572501 + MGP_CASTEiJ_P0048946 Sap130 protein_coding protein_coding MGP_CASTEiJ_T0048947.1 MGP_CASTEiJ_G0023423.1 mouse_genomes_project 18 29482851 29572501 + MGP_CASTEiJ_P0048947 Sap130 protein_coding protein_coding MGP_CASTEiJ_T0012956.1 MGP_CASTEiJ_G0011119.1 mouse_genomes_project 18 59710846 59711232 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049681.1 MGP_CASTEiJ_G0023709.1 mouse_genomes_project 18 63468826 63529372 + MGP_CASTEiJ_P0049681 Onecut2 protein_coding protein_coding MGP_CASTEiJ_T0049682.1 MGP_CASTEiJ_G0023709.1 mouse_genomes_project 18 63468826 63529374 + MGP_CASTEiJ_P0049682 Onecut2 protein_coding protein_coding MGP_CASTEiJ_T0049608.1 MGP_CASTEiJ_G0023683.1 mouse_genomes_project 18 60084848 60131143 - MGP_CASTEiJ_P0049608 Hmgxb3 protein_coding protein_coding MGP_CASTEiJ_T0050025.1 MGP_CASTEiJ_G0023807.1 mouse_genomes_project 18 82545205 82564684 - MGP_CASTEiJ_P0050025 Galr1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050026.1 MGP_CASTEiJ_G0023807.1 mouse_genomes_project 18 82550976 82565420 - MGP_CASTEiJ_P0050026 Galr1 protein_coding protein_coding MGP_CASTEiJ_T0099565.1 MGP_CASTEiJ_G0036478.1 mouse_genomes_project 18 32134028 32134090 - Gm23411 snRNA snRNA MGP_CASTEiJ_T0048999.1 MGP_CASTEiJ_G0023447.1 mouse_genomes_project 18 32303852 32335455 - MGP_CASTEiJ_P0048999 Reep5 protein_coding protein_coding MGP_CASTEiJ_T0003677.1 MGP_CASTEiJ_G0003314.1 mouse_genomes_project 18 19069857 19073556 + 4930426D05Rik antisense antisense MGP_CASTEiJ_T0003678.1 MGP_CASTEiJ_G0003314.1 mouse_genomes_project 18 19069974 19073549 + 4930426D05Rik antisense antisense MGP_CASTEiJ_T0003679.1 MGP_CASTEiJ_G0003314.1 mouse_genomes_project 18 19070964 19073565 + 4930426D05Rik antisense antisense MGP_CASTEiJ_T0003680.1 MGP_CASTEiJ_G0003314.1 mouse_genomes_project 18 19070967 19074513 + 4930426D05Rik antisense antisense MGP_CASTEiJ_T0050068.1 MGP_CASTEiJ_G0023819.1 mouse_genomes_project 18 85297215 85302230 - MGP_CASTEiJ_P0050068 Timm21 protein_coding protein_coding MGP_CASTEiJ_T0049201.1 MGP_CASTEiJ_G0023527.1 mouse_genomes_project 18 35564077 35567132 + MGP_CASTEiJ_P0049201 Pcdhb9 protein_coding protein_coding MGP_CASTEiJ_T0049554.1 MGP_CASTEiJ_G0023666.1 mouse_genomes_project 18 59270626 59299052 + MGP_CASTEiJ_P0049554 protein_coding protein_coding MGP_CASTEiJ_T0101557.1 MGP_CASTEiJ_G0038436.1 mouse_genomes_project 18 35248607 35250367 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101558.1 MGP_CASTEiJ_G0038436.1 mouse_genomes_project 18 35250130 35251069 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0009956.1 MGP_CASTEiJ_G0008144.1 mouse_genomes_project 18 2475728 2475827 + Gm22709 miRNA miRNA MGP_CASTEiJ_T0048867.1 MGP_CASTEiJ_G0023395.1 mouse_genomes_project 18 19238287 19619824 - MGP_CASTEiJ_P0048867 Ccdc178 protein_coding protein_coding MGP_CASTEiJ_T0048868.1 MGP_CASTEiJ_G0023395.1 mouse_genomes_project 18 19238688 19614901 - MGP_CASTEiJ_P0048868 Ccdc178 protein_coding protein_coding MGP_CASTEiJ_T0003695.1 MGP_CASTEiJ_G0003329.1 mouse_genomes_project 18 37608410 37632228 - Gm15337 antisense antisense MGP_CASTEiJ_T0048779.1 MGP_CASTEiJ_G0023361.1 mouse_genomes_project 18 9159102 9187218 + MGP_CASTEiJ_P0048779 Riok3 protein_coding protein_coding MGP_CASTEiJ_T0050056.1 MGP_CASTEiJ_G0023815.1 mouse_genomes_project 18 84972319 84992256 - MGP_CASTEiJ_P0050056 Cndp2 protein_coding protein_coding MGP_CASTEiJ_T0050057.1 MGP_CASTEiJ_G0023815.1 mouse_genomes_project 18 84972319 84986942 - MGP_CASTEiJ_P0050057 Cndp2 protein_coding protein_coding MGP_CASTEiJ_T0048683.1 MGP_CASTEiJ_G0023334.1 mouse_genomes_project 18 2893292 2977368 - MGP_CASTEiJ_P0048683 Arhgap12 protein_coding protein_coding MGP_CASTEiJ_T0048684.1 MGP_CASTEiJ_G0023334.1 mouse_genomes_project 18 2893650 3011731 - MGP_CASTEiJ_P0048684 Arhgap12 protein_coding protein_coding MGP_CASTEiJ_T0048685.1 MGP_CASTEiJ_G0023334.1 mouse_genomes_project 18 2894060 3011784 - MGP_CASTEiJ_P0048685 Arhgap12 protein_coding protein_coding MGP_CASTEiJ_T0048686.1 MGP_CASTEiJ_G0023334.1 mouse_genomes_project 18 2894080 3011923 - MGP_CASTEiJ_P0048686 Arhgap12 protein_coding protein_coding MGP_CASTEiJ_T0048687.1 MGP_CASTEiJ_G0023334.1 mouse_genomes_project 18 2895295 3011716 - MGP_CASTEiJ_P0048687 Arhgap12 protein_coding protein_coding MGP_CASTEiJ_T0048688.1 MGP_CASTEiJ_G0023334.1 mouse_genomes_project 18 2895419 3011712 - MGP_CASTEiJ_P0048688 Arhgap12 protein_coding protein_coding MGP_CASTEiJ_T0048689.1 MGP_CASTEiJ_G0023334.1 mouse_genomes_project 18 2901832 2903328 - Arhgap12 protein_coding retained_intron MGP_CASTEiJ_T0048690.1 MGP_CASTEiJ_G0023334.1 mouse_genomes_project 18 2908037 2938120 - Arhgap12 protein_coding processed_transcript MGP_CASTEiJ_T0048691.1 MGP_CASTEiJ_G0023334.1 mouse_genomes_project 18 2915749 2976985 - MGP_CASTEiJ_P0048691 Arhgap12 protein_coding protein_coding MGP_CASTEiJ_T0048692.1 MGP_CASTEiJ_G0023334.1 mouse_genomes_project 18 2924035 3011794 - Arhgap12 protein_coding processed_transcript MGP_CASTEiJ_T0048693.1 MGP_CASTEiJ_G0023334.1 mouse_genomes_project 18 2928307 2937969 - Arhgap12 protein_coding processed_transcript MGP_CASTEiJ_T0048694.1 MGP_CASTEiJ_G0023334.1 mouse_genomes_project 18 2928411 3011779 - MGP_CASTEiJ_P0048694 Arhgap12 protein_coding protein_coding MGP_CASTEiJ_T0048695.1 MGP_CASTEiJ_G0023334.1 mouse_genomes_project 18 2930805 3011765 - Arhgap12 protein_coding processed_transcript MGP_CASTEiJ_T0048696.1 MGP_CASTEiJ_G0023334.1 mouse_genomes_project 18 2932176 3011759 - Arhgap12 protein_coding processed_transcript MGP_CASTEiJ_T0048697.1 MGP_CASTEiJ_G0023334.1 mouse_genomes_project 18 2936674 2939122 - Arhgap12 protein_coding retained_intron MGP_CASTEiJ_T0048960.1 MGP_CASTEiJ_G0023434.1 mouse_genomes_project 18 30030477 30109284 + MGP_CASTEiJ_P0048960 Map3k2 protein_coding protein_coding MGP_CASTEiJ_T0048938.1 MGP_CASTEiJ_G0023418.1 mouse_genomes_project 18 28750505 29114500 - MGP_CASTEiJ_P0048938 Rit2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048939.1 MGP_CASTEiJ_G0023418.1 mouse_genomes_project 18 28751329 29114343 - MGP_CASTEiJ_P0048939 Rit2 protein_coding protein_coding MGP_CASTEiJ_T0048940.1 MGP_CASTEiJ_G0023418.1 mouse_genomes_project 18 28942099 29008280 - Rit2 protein_coding processed_transcript MGP_CASTEiJ_T0048941.1 MGP_CASTEiJ_G0023418.1 mouse_genomes_project 18 29001956 29114321 - MGP_CASTEiJ_P0048941 Rit2 protein_coding protein_coding MGP_CASTEiJ_T0049098.1 MGP_CASTEiJ_G0023480.1 mouse_genomes_project 18 33949800 33982800 + MGP_CASTEiJ_P0049098 Cxxc5 protein_coding protein_coding MGP_CASTEiJ_T0098358.1 MGP_CASTEiJ_G0035289.1 mouse_genomes_project 18 7014573 7015085 - pseudogene pseudogene MGP_CASTEiJ_T0049492.1 MGP_CASTEiJ_G0023643.1 mouse_genomes_project 18 52138425 52255254 + MGP_CASTEiJ_P0049492 Prdm6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049493.1 MGP_CASTEiJ_G0023643.1 mouse_genomes_project 18 52138555 52254566 + MGP_CASTEiJ_P0049493 Prdm6 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049494.1 MGP_CASTEiJ_G0023643.1 mouse_genomes_project 18 52139592 52255206 + MGP_CASTEiJ_P0049494 Prdm6 protein_coding protein_coding MGP_CASTEiJ_T0049495.1 MGP_CASTEiJ_G0023643.1 mouse_genomes_project 18 52147519 52255256 + MGP_CASTEiJ_P0049495 Prdm6 protein_coding protein_coding MGP_CASTEiJ_T0049496.1 MGP_CASTEiJ_G0023643.1 mouse_genomes_project 18 52237138 52255206 + MGP_CASTEiJ_P0049496 Prdm6 protein_coding protein_coding MGP_CASTEiJ_T0049232.1 MGP_CASTEiJ_G0023552.1 mouse_genomes_project 18 35852675 35977834 + MGP_CASTEiJ_P0049232 Pcdhga8 protein_coding protein_coding MGP_CASTEiJ_T0048646.1 MGP_CASTEiJ_G0023327.1 mouse_genomes_project 18 958496 975114 + MGP_CASTEiJ_P0048646 Lyzl1 protein_coding protein_coding MGP_CASTEiJ_T0048647.1 MGP_CASTEiJ_G0023327.1 mouse_genomes_project 18 958526 975114 + MGP_CASTEiJ_P0048647 Lyzl1 protein_coding protein_coding MGP_CASTEiJ_T0000975.1 MGP_CASTEiJ_G0000911.1 mouse_genomes_project 18 84661808 84665285 - TEC TEC MGP_CASTEiJ_T0049242.1 MGP_CASTEiJ_G0023559.1 mouse_genomes_project 18 35940135 35943515 + Pcdhgc3 protein_coding retained_intron MGP_CASTEiJ_T0049243.1 MGP_CASTEiJ_G0023559.1 mouse_genomes_project 18 35940181 35977834 + MGP_CASTEiJ_P0049243 Pcdhgc3 protein_coding protein_coding MGP_CASTEiJ_T0049244.1 MGP_CASTEiJ_G0023559.1 mouse_genomes_project 18 35940187 35977834 + MGP_CASTEiJ_P0049244 Pcdhgc3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0100810.1 MGP_CASTEiJ_G0037723.1 mouse_genomes_project 18 74792512 74792578 + Snord58b snoRNA snoRNA MGP_CASTEiJ_T0003690.1 MGP_CASTEiJ_G0003324.1 mouse_genomes_project 18 35841192 35853091 - Gm37165 antisense antisense MGP_CASTEiJ_T0016898.1 MGP_CASTEiJ_G0014682.1 mouse_genomes_project 18 66697624 66705301 - B430212C06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016899.1 MGP_CASTEiJ_G0014682.1 mouse_genomes_project 18 66697624 66723162 - B430212C06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016900.1 MGP_CASTEiJ_G0014682.1 mouse_genomes_project 18 66697804 66722642 - B430212C06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016901.1 MGP_CASTEiJ_G0014682.1 mouse_genomes_project 18 66699424 66705480 - B430212C06Rik processed_transcript retained_intron MGP_CASTEiJ_T0016902.1 MGP_CASTEiJ_G0014682.1 mouse_genomes_project 18 66699437 66705540 - B430212C06Rik processed_transcript processed_transcript MGP_CASTEiJ_T0049301.1 MGP_CASTEiJ_G0023573.1 mouse_genomes_project 18 36782532 36797588 - MGP_CASTEiJ_P0049301 Spry4 protein_coding protein_coding MGP_CASTEiJ_T0048847.1 MGP_CASTEiJ_G0023383.1 mouse_genomes_project 18 17422255 17456400 - MGP_CASTEiJ_P0048847 Dsc1 protein_coding protein_coding MGP_CASTEiJ_T0049684.1 MGP_CASTEiJ_G0023711.1 mouse_genomes_project 18 63636717 63656502 - MGP_CASTEiJ_P0049684 Nars protein_coding protein_coding MGP_CASTEiJ_T0099589.1 MGP_CASTEiJ_G0036502.1 mouse_genomes_project 18 85061487 85061643 - Gm25005 snRNA snRNA MGP_CASTEiJ_T0101559.1 MGP_CASTEiJ_G0038437.1 mouse_genomes_project 18 35777938 35779718 - transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0049551.1 MGP_CASTEiJ_G0023664.1 mouse_genomes_project 18 58156731 58409278 + MGP_CASTEiJ_P0049551 Chsy3 protein_coding protein_coding MGP_CASTEiJ_T0049552.1 MGP_CASTEiJ_G0023664.1 mouse_genomes_project 18 58156974 58534265 + MGP_CASTEiJ_P0049552 Chsy3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0009973.1 MGP_CASTEiJ_G0008161.1 mouse_genomes_project 18 36114168 36114283 - Mir6981 miRNA miRNA MGP_CASTEiJ_T0048805.1 MGP_CASTEiJ_G0023367.1 mouse_genomes_project 18 9810585 9824204 + MGP_CASTEiJ_P0048805 Cabyr protein_coding protein_coding MGP_CASTEiJ_T0048806.1 MGP_CASTEiJ_G0023367.1 mouse_genomes_project 18 9810608 9824198 + MGP_CASTEiJ_P0048806 Cabyr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048807.1 MGP_CASTEiJ_G0023367.1 mouse_genomes_project 18 9810610 9824198 + MGP_CASTEiJ_P0048807 Cabyr protein_coding protein_coding MGP_CASTEiJ_T0048808.1 MGP_CASTEiJ_G0023367.1 mouse_genomes_project 18 9810616 9824200 + MGP_CASTEiJ_P0048808 Cabyr protein_coding protein_coding MGP_CASTEiJ_T0048809.1 MGP_CASTEiJ_G0023367.1 mouse_genomes_project 18 9810616 9824200 + MGP_CASTEiJ_P0048809 Cabyr protein_coding protein_coding MGP_CASTEiJ_T0048810.1 MGP_CASTEiJ_G0023367.1 mouse_genomes_project 18 9810616 9824200 + MGP_CASTEiJ_P0048810 Cabyr protein_coding protein_coding MGP_CASTEiJ_T0100807.1 MGP_CASTEiJ_G0037720.1 mouse_genomes_project 18 65900656 65900767 - Gm24679 snoRNA snoRNA MGP_CASTEiJ_T0049635.1 MGP_CASTEiJ_G0023692.1 mouse_genomes_project 18 60726573 60787309 - MGP_CASTEiJ_P0049635 Afap1l1 protein_coding protein_coding MGP_CASTEiJ_T0049636.1 MGP_CASTEiJ_G0023692.1 mouse_genomes_project 18 60726573 60787218 - MGP_CASTEiJ_P0049636 Afap1l1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049637.1 MGP_CASTEiJ_G0023692.1 mouse_genomes_project 18 60727251 60787267 - Afap1l1 protein_coding retained_intron MGP_CASTEiJ_T0100799.1 MGP_CASTEiJ_G0037712.1 mouse_genomes_project 18 33645725 33645921 + Snora74a snoRNA snoRNA MGP_CASTEiJ_T0099571.1 MGP_CASTEiJ_G0036484.1 mouse_genomes_project 18 49816613 49816720 - Gm25739 snRNA snRNA MGP_CASTEiJ_T0009997.1 MGP_CASTEiJ_G0008185.1 mouse_genomes_project 18 76073748 76073849 + Mir6358 miRNA miRNA MGP_CASTEiJ_T0049442.1 MGP_CASTEiJ_G0023626.1 mouse_genomes_project 18 48255439 48327714 - MGP_CASTEiJ_P0049442 Dtwd2 protein_coding protein_coding MGP_CASTEiJ_T0049443.1 MGP_CASTEiJ_G0023626.1 mouse_genomes_project 18 48255818 48327714 - MGP_CASTEiJ_P0049443 Dtwd2 protein_coding protein_coding MGP_CASTEiJ_T0049444.1 MGP_CASTEiJ_G0023626.1 mouse_genomes_project 18 48258706 48302732 - Dtwd2 protein_coding processed_transcript MGP_CASTEiJ_T0012959.1 MGP_CASTEiJ_G0011122.1 mouse_genomes_project 18 76124367 76124581 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049388.1 MGP_CASTEiJ_G0023606.1 mouse_genomes_project 18 42659890 42667710 + MGP_CASTEiJ_P0049388 Npy6r protein_coding protein_coding MGP_CASTEiJ_T0049501.1 MGP_CASTEiJ_G0023646.1 mouse_genomes_project 18 53646569 53754767 - MGP_CASTEiJ_P0049501 Zfp608 protein_coding protein_coding MGP_CASTEiJ_T0048898.1 MGP_CASTEiJ_G0023402.1 mouse_genomes_project 18 21456965 21457834 - MGP_CASTEiJ_P0048898 protein_coding protein_coding MGP_CASTEiJ_T0049963.1 MGP_CASTEiJ_G0023784.1 mouse_genomes_project 18 77611165 77699855 - MGP_CASTEiJ_P0049963 8030462N17Rik protein_coding protein_coding MGP_CASTEiJ_T0098552.1 MGP_CASTEiJ_G0035483.1 mouse_genomes_project 18 36525025 36525122 + Gm24690 rRNA rRNA MGP_CASTEiJ_T0048974.1 MGP_CASTEiJ_G0023441.1 mouse_genomes_project 18 31082343 31097057 - MGP_CASTEiJ_P0048974 Stard4 protein_coding protein_coding MGP_CASTEiJ_T0048975.1 MGP_CASTEiJ_G0023441.1 mouse_genomes_project 18 31086396 31096961 - MGP_CASTEiJ_P0048975 Stard4 protein_coding protein_coding MGP_CASTEiJ_T0048976.1 MGP_CASTEiJ_G0023441.1 mouse_genomes_project 18 31086590 31096967 - MGP_CASTEiJ_P0048976 Stard4 protein_coding protein_coding MGP_CASTEiJ_T0048977.1 MGP_CASTEiJ_G0023441.1 mouse_genomes_project 18 31087876 31097016 - Stard4 protein_coding retained_intron MGP_CASTEiJ_T0003702.1 MGP_CASTEiJ_G0003334.1 mouse_genomes_project 18 60686672 60688012 - Gm38165 antisense antisense MGP_CASTEiJ_T0000974.1 MGP_CASTEiJ_G0000910.1 mouse_genomes_project 18 80467587 80470654 + TEC TEC MGP_CASTEiJ_T0006866.1 MGP_CASTEiJ_G0005659.1 mouse_genomes_project 18 77722900 77726685 - A330094K24Rik lincRNA lincRNA MGP_CASTEiJ_T0049601.1 MGP_CASTEiJ_G0023679.1 mouse_genomes_project 18 59943008 59963751 - MGP_CASTEiJ_P0049601 Slc6a7 protein_coding protein_coding MGP_CASTEiJ_T0049722.1 MGP_CASTEiJ_G0023719.1 mouse_genomes_project 18 65159051 65174247 + MGP_CASTEiJ_P0049722 Grp protein_coding protein_coding MGP_CASTEiJ_T0049723.1 MGP_CASTEiJ_G0023719.1 mouse_genomes_project 18 65159713 65166469 + MGP_CASTEiJ_P0049723 Grp protein_coding protein_coding MGP_CASTEiJ_T0049724.1 MGP_CASTEiJ_G0023719.1 mouse_genomes_project 18 65159723 65174246 + MGP_CASTEiJ_P0049724 Grp protein_coding protein_coding MGP_CASTEiJ_T0049725.1 MGP_CASTEiJ_G0023720.1 mouse_genomes_project 18 65232980 65237461 - MGP_CASTEiJ_P0049725 Rax protein_coding protein_coding MGP_CASTEiJ_T0098747.1 MGP_CASTEiJ_G0035678.1 mouse_genomes_project 18 74542478 74542618 - Gm23119 scaRNA scaRNA MGP_CASTEiJ_T0049988.1 MGP_CASTEiJ_G0023799.1 mouse_genomes_project 18 80301648 80318144 + MGP_CASTEiJ_P0049988 Txnl4a protein_coding protein_coding MGP_CASTEiJ_T0049992.1 MGP_CASTEiJ_G0023799.1 mouse_genomes_project 18 80301716 80316805 + MGP_CASTEiJ_P0049992 Txnl4a protein_coding protein_coding MGP_CASTEiJ_T0049994.1 MGP_CASTEiJ_G0023799.1 mouse_genomes_project 18 80301747 80313292 + Txnl4a protein_coding retained_intron MGP_CASTEiJ_T0049999.1 MGP_CASTEiJ_G0023799.1 mouse_genomes_project 18 80310240 80316941 + Txnl4a protein_coding processed_transcript MGP_CASTEiJ_T0009970.1 MGP_CASTEiJ_G0008158.1 mouse_genomes_project 18 34081969 34082063 + Gm23882 miRNA miRNA MGP_CASTEiJ_T0049105.1 MGP_CASTEiJ_G0023482.1 mouse_genomes_project 18 34151519 34350457 - MGP_CASTEiJ_P0049105 Nrg2 protein_coding protein_coding MGP_CASTEiJ_T0049106.1 MGP_CASTEiJ_G0023482.1 mouse_genomes_project 18 34151519 34350457 - MGP_CASTEiJ_P0049106 Nrg2 protein_coding protein_coding MGP_CASTEiJ_T0049107.1 MGP_CASTEiJ_G0023482.1 mouse_genomes_project 18 34151620 34349940 - MGP_CASTEiJ_P0049107 Nrg2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049108.1 MGP_CASTEiJ_G0023482.1 mouse_genomes_project 18 34151727 34191032 - MGP_CASTEiJ_P0049108 Nrg2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049109.1 MGP_CASTEiJ_G0023482.1 mouse_genomes_project 18 34161233 34350309 - MGP_CASTEiJ_P0049109 Nrg2 protein_coding protein_coding MGP_CASTEiJ_T0049010.1 MGP_CASTEiJ_G0023453.1 mouse_genomes_project 18 32581981 32607134 - MGP_CASTEiJ_P0049010 Brd8 protein_coding protein_coding MGP_CASTEiJ_T0049011.1 MGP_CASTEiJ_G0023453.1 mouse_genomes_project 18 32581981 32607134 - MGP_CASTEiJ_P0049011 Brd8 protein_coding protein_coding MGP_CASTEiJ_T0049012.1 MGP_CASTEiJ_G0023453.1 mouse_genomes_project 18 32582972 32607086 - Brd8 protein_coding retained_intron MGP_CASTEiJ_T0049013.1 MGP_CASTEiJ_G0023453.1 mouse_genomes_project 18 32583001 32607134 - MGP_CASTEiJ_P0049013 Brd8 protein_coding protein_coding MGP_CASTEiJ_T0049014.1 MGP_CASTEiJ_G0023453.1 mouse_genomes_project 18 32584345 32607134 - MGP_CASTEiJ_P0049014 Brd8 protein_coding protein_coding MGP_CASTEiJ_T0049015.1 MGP_CASTEiJ_G0023453.1 mouse_genomes_project 18 32593433 32607134 - Brd8 protein_coding retained_intron MGP_CASTEiJ_T0049016.1 MGP_CASTEiJ_G0023453.1 mouse_genomes_project 18 32594423 32607087 - Brd8 protein_coding processed_transcript MGP_CASTEiJ_T0049017.1 MGP_CASTEiJ_G0023453.1 mouse_genomes_project 18 32604442 32607134 - Brd8 protein_coding retained_intron MGP_CASTEiJ_T0049980.1 MGP_CASTEiJ_G0023793.1 mouse_genomes_project 18 78779000 79154062 - MGP_CASTEiJ_P0049980 Setbp1 protein_coding protein_coding MGP_CASTEiJ_T0049981.1 MGP_CASTEiJ_G0023793.1 mouse_genomes_project 18 78783336 79153894 - MGP_CASTEiJ_P0049981 Setbp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049202.1 MGP_CASTEiJ_G0023528.1 mouse_genomes_project 18 35574958 35577806 + MGP_CASTEiJ_P0049202 Pcdhb10 protein_coding protein_coding MGP_CASTEiJ_T0049412.1 MGP_CASTEiJ_G0023612.1 mouse_genomes_project 18 44568157 44621828 - MGP_CASTEiJ_P0049412 Trim36 protein_coding protein_coding MGP_CASTEiJ_T0049413.1 MGP_CASTEiJ_G0023612.1 mouse_genomes_project 18 44568157 44606482 - MGP_CASTEiJ_P0049413 Trim36 protein_coding protein_coding MGP_CASTEiJ_T0048900.1 MGP_CASTEiJ_G0023404.1 mouse_genomes_project 18 21488998 21500324 - MGP_CASTEiJ_P0048900 Zfp24 protein_coding protein_coding MGP_CASTEiJ_T0048901.1 MGP_CASTEiJ_G0023404.1 mouse_genomes_project 18 21493219 21499694 - MGP_CASTEiJ_P0048901 Zfp24 protein_coding protein_coding MGP_CASTEiJ_T0048902.1 MGP_CASTEiJ_G0023404.1 mouse_genomes_project 18 21497272 21499744 - MGP_CASTEiJ_P0048902 Zfp24 protein_coding protein_coding MGP_CASTEiJ_T0049030.1 MGP_CASTEiJ_G0023458.1 mouse_genomes_project 18 32758950 32773658 + MGP_CASTEiJ_P0049030 Fam53c protein_coding protein_coding MGP_CASTEiJ_T0049031.1 MGP_CASTEiJ_G0023458.1 mouse_genomes_project 18 32759600 32773636 + MGP_CASTEiJ_P0049031 Fam53c protein_coding protein_coding MGP_CASTEiJ_T0049613.1 MGP_CASTEiJ_G0023685.1 mouse_genomes_project 18 60177688 60253183 + MGP_CASTEiJ_P0049613 Pde6a protein_coding protein_coding MGP_CASTEiJ_T0049614.1 MGP_CASTEiJ_G0023685.1 mouse_genomes_project 18 60177724 60261481 + MGP_CASTEiJ_P0049614 Pde6a protein_coding unknown_likely_coding MGP_CASTEiJ_T0049615.1 MGP_CASTEiJ_G0023685.1 mouse_genomes_project 18 60235781 60253183 + MGP_CASTEiJ_P0049615 Pde6a protein_coding protein_coding MGP_CASTEiJ_T0049529.1 MGP_CASTEiJ_G0023655.1 mouse_genomes_project 18 56263990 56307865 + MGP_CASTEiJ_P0049529 Prrc1 protein_coding protein_coding MGP_CASTEiJ_T0003681.1 MGP_CASTEiJ_G0003315.1 mouse_genomes_project 18 21237416 21239273 - Gm15972 antisense antisense MGP_CASTEiJ_T0048969.1 MGP_CASTEiJ_G0023438.1 mouse_genomes_project 18 30704066 30708481 + MGP_CASTEiJ_P0048969 Tslp protein_coding protein_coding MGP_CASTEiJ_T0009967.1 MGP_CASTEiJ_G0008155.1 mouse_genomes_project 18 30770017 30770118 - Mir6361 miRNA miRNA MGP_CASTEiJ_T0009983.1 MGP_CASTEiJ_G0008171.1 mouse_genomes_project 18 59896325 59896385 + Mir7220 miRNA miRNA MGP_CASTEiJ_T0049747.1 MGP_CASTEiJ_G0023732.1 mouse_genomes_project 18 66852564 66869475 + MGP_CASTEiJ_P0049747 Slmo1 protein_coding protein_coding MGP_CASTEiJ_T0048712.1 MGP_CASTEiJ_G0023339.1 mouse_genomes_project 18 3789186 3812502 - Mkx protein_coding processed_transcript MGP_CASTEiJ_T0048713.1 MGP_CASTEiJ_G0023339.1 mouse_genomes_project 18 3810844 3884681 - MGP_CASTEiJ_P0048713 Mkx protein_coding protein_coding MGP_CASTEiJ_T0048714.1 MGP_CASTEiJ_G0023339.1 mouse_genomes_project 18 3812832 3872867 - Mkx protein_coding retained_intron MGP_CASTEiJ_T0048715.1 MGP_CASTEiJ_G0023339.1 mouse_genomes_project 18 3880527 3883683 - Mkx protein_coding processed_transcript MGP_CASTEiJ_T0048716.1 MGP_CASTEiJ_G0023339.1 mouse_genomes_project 18 3882195 3884627 - Mkx protein_coding retained_intron MGP_CASTEiJ_T0016872.1 MGP_CASTEiJ_G0014674.1 mouse_genomes_project 18 35875256 35886897 - Gm26672 processed_transcript antisense MGP_CASTEiJ_T0016873.1 MGP_CASTEiJ_G0014674.1 mouse_genomes_project 18 35883076 35898064 - Gm26672 processed_transcript antisense MGP_CASTEiJ_T0016874.1 MGP_CASTEiJ_G0014674.1 mouse_genomes_project 18 35883218 35898765 - Gm26672 processed_transcript antisense MGP_CASTEiJ_T0016875.1 MGP_CASTEiJ_G0014674.1 mouse_genomes_project 18 35885767 35887291 - Gm26672 processed_transcript retained_intron MGP_CASTEiJ_T0003673.1 MGP_CASTEiJ_G0003310.1 mouse_genomes_project 18 9227848 9232986 + Gm15956 antisense antisense MGP_CASTEiJ_T0049471.1 MGP_CASTEiJ_G0023633.1 mouse_genomes_project 18 50958110 50959560 + MGP_CASTEiJ_P0049471 Ftmt protein_coding protein_coding MGP_CASTEiJ_T0048828.1 MGP_CASTEiJ_G0023374.1 mouse_genomes_project 18 11885368 11938053 + MGP_CASTEiJ_P0048828 Psma8 protein_coding protein_coding MGP_CASTEiJ_T0049086.1 MGP_CASTEiJ_G0023476.1 mouse_genomes_project 18 33795549 33825396 + 1700066B19Rik protein_coding processed_transcript MGP_CASTEiJ_T0049093.1 MGP_CASTEiJ_G0023476.1 mouse_genomes_project 18 33822458 33826457 + MGP_CASTEiJ_P0049093 1700066B19Rik protein_coding protein_coding MGP_CASTEiJ_T0100795.1 MGP_CASTEiJ_G0037708.1 mouse_genomes_project 18 32022723 32022854 + Gm24432 snoRNA snoRNA MGP_CASTEiJ_T0012935.1 MGP_CASTEiJ_G0011098.1 mouse_genomes_project 18 28244795 28245170 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006842.1 MGP_CASTEiJ_G0005641.1 mouse_genomes_project 18 35746956 35752556 + lincRNA lincRNA MGP_CASTEiJ_T0049903.1 MGP_CASTEiJ_G0023768.1 mouse_genomes_project 18 74719473 74741924 - MGP_CASTEiJ_P0049903 Lipg protein_coding protein_coding MGP_CASTEiJ_T0100814.1 MGP_CASTEiJ_G0037727.1 mouse_genomes_project 18 79620539 79620660 - Gm25824 snoRNA snoRNA MGP_CASTEiJ_T0050067.1 MGP_CASTEiJ_G0023818.1 mouse_genomes_project 18 85285105 85333690 + MGP_CASTEiJ_P0050067 Fbxo15 protein_coding protein_coding MGP_CASTEiJ_T0050069.1 MGP_CASTEiJ_G0023818.1 mouse_genomes_project 18 85302860 85333690 + MGP_CASTEiJ_P0050069 Fbxo15 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048944.1 MGP_CASTEiJ_G0023421.1 mouse_genomes_project 18 29425787 29458325 - MGP_CASTEiJ_P0048944 Slc25a46 protein_coding protein_coding MGP_CASTEiJ_T0048916.1 MGP_CASTEiJ_G0023410.1 mouse_genomes_project 18 22116574 22152186 + MGP_CASTEiJ_P0048916 Elp2 protein_coding protein_coding MGP_CASTEiJ_T0011121.1 MGP_CASTEiJ_G0009309.1 mouse_genomes_project 18 23168994 23169304 - Gm25845 misc_RNA misc_RNA MGP_CASTEiJ_T0006853.1 MGP_CASTEiJ_G0005649.1 mouse_genomes_project 18 57162745 57174395 + Gm26507 lincRNA lincRNA MGP_CASTEiJ_T0049135.1 MGP_CASTEiJ_G0023489.1 mouse_genomes_project 18 34858131 34859989 + MGP_CASTEiJ_P0049135 Eif4ebp3 protein_coding protein_coding MGP_CASTEiJ_T0049136.1 MGP_CASTEiJ_G0023490.1 mouse_genomes_project 18 34860752 34865946 - MGP_CASTEiJ_P0049136 Sra1 protein_coding protein_coding MGP_CASTEiJ_T0049137.1 MGP_CASTEiJ_G0023490.1 mouse_genomes_project 18 34861317 34865030 - MGP_CASTEiJ_P0049137 Sra1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049138.1 MGP_CASTEiJ_G0023490.1 mouse_genomes_project 18 34861343 34865050 - Sra1 protein_coding retained_intron MGP_CASTEiJ_T0049139.1 MGP_CASTEiJ_G0023490.1 mouse_genomes_project 18 34861502 34865029 - MGP_CASTEiJ_P0049139 Sra1 protein_coding protein_coding MGP_CASTEiJ_T0049140.1 MGP_CASTEiJ_G0023490.1 mouse_genomes_project 18 34864565 34865020 - Sra1 protein_coding retained_intron MGP_CASTEiJ_T0049141.1 MGP_CASTEiJ_G0023490.1 mouse_genomes_project 18 34865909 34876575 - MGP_CASTEiJ_P0049141 Sra1 protein_coding protein_coding MGP_CASTEiJ_T0049240.1 MGP_CASTEiJ_G0023558.1 mouse_genomes_project 18 35896090 35977834 + MGP_CASTEiJ_P0049240 Pcdhga12 protein_coding protein_coding MGP_CASTEiJ_T0049241.1 MGP_CASTEiJ_G0023558.1 mouse_genomes_project 18 35896295 35900973 + Pcdhga12 protein_coding retained_intron MGP_CASTEiJ_T0003694.1 MGP_CASTEiJ_G0003328.1 mouse_genomes_project 18 37481212 37537780 - Gm15336 antisense antisense MGP_CASTEiJ_T0006860.1 MGP_CASTEiJ_G0005653.1 mouse_genomes_project 18 62465225 62491428 + Gm26972 lincRNA lincRNA MGP_CASTEiJ_T0011117.1 MGP_CASTEiJ_G0009305.1 mouse_genomes_project 18 14414071 14414302 - Gm24015 misc_RNA misc_RNA MGP_CASTEiJ_T0049964.1 MGP_CASTEiJ_G0023785.1 mouse_genomes_project 18 77753211 77765767 - MGP_CASTEiJ_P0049964 Haus1 protein_coding protein_coding MGP_CASTEiJ_T0049519.1 MGP_CASTEiJ_G0023651.1 mouse_genomes_project 18 55587991 55633901 + MGP_CASTEiJ_P0049519 Lmnb1 protein_coding protein_coding MGP_CASTEiJ_T0049520.1 MGP_CASTEiJ_G0023651.1 mouse_genomes_project 18 55608389 55613383 + Lmnb1 protein_coding retained_intron MGP_CASTEiJ_T0006848.1 MGP_CASTEiJ_G0005645.1 mouse_genomes_project 18 48083923 48085078 + 1700044K03Rik lincRNA lincRNA MGP_CASTEiJ_T0049531.1 MGP_CASTEiJ_G0023657.1 mouse_genomes_project 18 56458651 56662738 + MGP_CASTEiJ_P0049531 1700011I03Rik protein_coding protein_coding MGP_CASTEiJ_T0049532.1 MGP_CASTEiJ_G0023657.1 mouse_genomes_project 18 56458700 56662738 + MGP_CASTEiJ_P0049532 1700011I03Rik protein_coding protein_coding MGP_CASTEiJ_T0049533.1 MGP_CASTEiJ_G0023657.1 mouse_genomes_project 18 56458753 56491486 + MGP_CASTEiJ_P0049533 1700011I03Rik protein_coding protein_coding MGP_CASTEiJ_T0049534.1 MGP_CASTEiJ_G0023657.1 mouse_genomes_project 18 56487680 56662679 + MGP_CASTEiJ_P0049534 1700011I03Rik protein_coding protein_coding MGP_CASTEiJ_T0098555.1 MGP_CASTEiJ_G0035486.1 mouse_genomes_project 18 68683435 68683569 - Gm23536 rRNA rRNA MGP_CASTEiJ_T0049074.1 MGP_CASTEiJ_G0023471.1 mouse_genomes_project 18 33704829 33717465 - MGP_CASTEiJ_P0049074 Slc23a1 protein_coding protein_coding MGP_CASTEiJ_T0049075.1 MGP_CASTEiJ_G0023471.1 mouse_genomes_project 18 33708885 33717454 - MGP_CASTEiJ_P0049075 Slc23a1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0049076.1 MGP_CASTEiJ_G0023471.1 mouse_genomes_project 18 33709609 33717417 - MGP_CASTEiJ_P0049076 Slc23a1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049077.1 MGP_CASTEiJ_G0023471.1 mouse_genomes_project 18 33710305 33712841 - Slc23a1 protein_coding processed_transcript MGP_CASTEiJ_T0049078.1 MGP_CASTEiJ_G0023471.1 mouse_genomes_project 18 33713058 33717457 - Slc23a1 protein_coding processed_transcript MGP_CASTEiJ_T0006854.1 MGP_CASTEiJ_G0005650.1 mouse_genomes_project 18 60630193 60640160 + Bvht lincRNA lincRNA MGP_CASTEiJ_T0006855.1 MGP_CASTEiJ_G0005650.1 mouse_genomes_project 18 60630304 60640339 + Bvht lincRNA lincRNA MGP_CASTEiJ_T0049228.1 MGP_CASTEiJ_G0023550.1 mouse_genomes_project 18 35841677 35977834 + MGP_CASTEiJ_P0049228 Pcdhga7 protein_coding protein_coding MGP_CASTEiJ_T0049229.1 MGP_CASTEiJ_G0023550.1 mouse_genomes_project 18 35841731 35844830 + MGP_CASTEiJ_P0049229 Pcdhga7 protein_coding protein_coding MGP_CASTEiJ_T0049737.1 MGP_CASTEiJ_G0023724.1 mouse_genomes_project 18 65803744 65810721 + MGP_CASTEiJ_P0049737 Pmaip1 protein_coding protein_coding MGP_CASTEiJ_T0049172.1 MGP_CASTEiJ_G0023507.1 mouse_genomes_project 18 35156181 35356123 + MGP_CASTEiJ_P0049172 Pcdha5 protein_coding protein_coding MGP_CASTEiJ_T0048850.1 MGP_CASTEiJ_G0023386.1 mouse_genomes_project 18 17934278 17984108 + MGP_CASTEiJ_P0048850 Dsg2 protein_coding protein_coding MGP_CASTEiJ_T0048851.1 MGP_CASTEiJ_G0023386.1 mouse_genomes_project 18 17934359 17962434 + MGP_CASTEiJ_P0048851 Dsg2 protein_coding protein_coding MGP_CASTEiJ_T0048852.1 MGP_CASTEiJ_G0023386.1 mouse_genomes_project 18 17934450 17959797 + MGP_CASTEiJ_P0048852 Dsg2 protein_coding protein_coding MGP_CASTEiJ_T0049046.1 MGP_CASTEiJ_G0023467.1 mouse_genomes_project 18 33618102 33618457 + MGP_CASTEiJ_P0049046 Gm5239 protein_coding protein_coding MGP_CASTEiJ_T0049715.1 MGP_CASTEiJ_G0023718.1 mouse_genomes_project 18 65079320 65098142 + MGP_CASTEiJ_P0049715 Sec11c protein_coding protein_coding MGP_CASTEiJ_T0049716.1 MGP_CASTEiJ_G0023718.1 mouse_genomes_project 18 65079321 65098133 + MGP_CASTEiJ_P0049716 Sec11c protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0049717.1 MGP_CASTEiJ_G0023718.1 mouse_genomes_project 18 65079343 65093224 + MGP_CASTEiJ_P0049717 Sec11c protein_coding protein_coding MGP_CASTEiJ_T0049718.1 MGP_CASTEiJ_G0023718.1 mouse_genomes_project 18 65079374 65098134 + Sec11c protein_coding retained_intron MGP_CASTEiJ_T0049719.1 MGP_CASTEiJ_G0023718.1 mouse_genomes_project 18 65080073 65093274 + Sec11c protein_coding processed_transcript MGP_CASTEiJ_T0049720.1 MGP_CASTEiJ_G0023718.1 mouse_genomes_project 18 65085404 65098137 + Sec11c protein_coding processed_transcript MGP_CASTEiJ_T0049721.1 MGP_CASTEiJ_G0023718.1 mouse_genomes_project 18 65094510 65098137 + Sec11c protein_coding processed_transcript MGP_CASTEiJ_T0049192.1 MGP_CASTEiJ_G0023520.1 mouse_genomes_project 18 35466346 35470028 + MGP_CASTEiJ_P0049192 Pcdhb3 protein_coding protein_coding MGP_CASTEiJ_T0049299.1 MGP_CASTEiJ_G0023572.1 mouse_genomes_project 18 36602186 36650007 + MGP_CASTEiJ_P0049299 Ndfip1 protein_coding protein_coding MGP_CASTEiJ_T0049300.1 MGP_CASTEiJ_G0023572.1 mouse_genomes_project 18 36602277 36656721 + MGP_CASTEiJ_P0049300 Ndfip1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0098361.1 MGP_CASTEiJ_G0035292.1 mouse_genomes_project 18 89842661 89849390 - pseudogene pseudogene MGP_CASTEiJ_T0048741.1 MGP_CASTEiJ_G0023349.1 mouse_genomes_project 18 6814180 6853120 + MGP_CASTEiJ_P0048741 Thoc1 protein_coding protein_coding MGP_CASTEiJ_T0049477.1 MGP_CASTEiJ_G0023637.1 mouse_genomes_project 18 51267359 51285492 + MGP_CASTEiJ_P0049477 1700034E13Rik protein_coding protein_coding MGP_CASTEiJ_T0049478.1 MGP_CASTEiJ_G0023637.1 mouse_genomes_project 18 51267366 51285492 + MGP_CASTEiJ_P0049478 1700034E13Rik protein_coding protein_coding MGP_CASTEiJ_T0049195.1 MGP_CASTEiJ_G0023523.1 mouse_genomes_project 18 35500662 35503394 + MGP_CASTEiJ_P0049195 protein_coding protein_coding MGP_CASTEiJ_T0049196.1 MGP_CASTEiJ_G0023523.1 mouse_genomes_project 18 35501872 35504801 + MGP_CASTEiJ_P0049196 protein_coding protein_coding MGP_CASTEiJ_T0098558.1 MGP_CASTEiJ_G0035489.1 mouse_genomes_project 18 74823441 74823533 + Gm27781 rRNA rRNA MGP_CASTEiJ_T0016904.1 MGP_CASTEiJ_G0014684.1 mouse_genomes_project 18 77800537 77804047 - F830208F22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016905.1 MGP_CASTEiJ_G0014684.1 mouse_genomes_project 18 77800537 77803694 - F830208F22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0000971.1 MGP_CASTEiJ_G0000907.1 mouse_genomes_project 18 60947683 60947928 - TEC TEC MGP_CASTEiJ_T0049577.1 MGP_CASTEiJ_G0023673.1 mouse_genomes_project 18 59610816 59640258 - MGP_CASTEiJ_P0049577 Ndst1 protein_coding protein_coding MGP_CASTEiJ_T0049594.1 MGP_CASTEiJ_G0023678.1 mouse_genomes_project 18 59865851 59934499 + MGP_CASTEiJ_P0049594 Camk2a protein_coding protein_coding MGP_CASTEiJ_T0049595.1 MGP_CASTEiJ_G0023678.1 mouse_genomes_project 18 59865865 59883765 + Camk2a protein_coding retained_intron MGP_CASTEiJ_T0049596.1 MGP_CASTEiJ_G0023678.1 mouse_genomes_project 18 59865865 59932752 + MGP_CASTEiJ_P0049596 Camk2a protein_coding protein_coding MGP_CASTEiJ_T0049597.1 MGP_CASTEiJ_G0023678.1 mouse_genomes_project 18 59865958 59883783 + MGP_CASTEiJ_P0049597 Camk2a protein_coding protein_coding MGP_CASTEiJ_T0049598.1 MGP_CASTEiJ_G0023678.1 mouse_genomes_project 18 59867215 59898147 + MGP_CASTEiJ_P0049598 Camk2a protein_coding protein_coding MGP_CASTEiJ_T0049599.1 MGP_CASTEiJ_G0023678.1 mouse_genomes_project 18 59906129 59931224 + MGP_CASTEiJ_P0049599 Camk2a protein_coding protein_coding MGP_CASTEiJ_T0049600.1 MGP_CASTEiJ_G0023678.1 mouse_genomes_project 18 59906175 59932058 + MGP_CASTEiJ_P0049600 Camk2a protein_coding protein_coding MGP_CASTEiJ_T0048638.1 MGP_CASTEiJ_G0023325.1 mouse_genomes_project 18 202967 256850 + MGP_CASTEiJ_P0048638 Cul2 protein_coding protein_coding MGP_CASTEiJ_T0048639.1 MGP_CASTEiJ_G0023325.1 mouse_genomes_project 18 203204 255862 + MGP_CASTEiJ_P0048639 Cul2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0048640.1 MGP_CASTEiJ_G0023325.1 mouse_genomes_project 18 203211 256853 + MGP_CASTEiJ_P0048640 Cul2 protein_coding protein_coding MGP_CASTEiJ_T0048641.1 MGP_CASTEiJ_G0023325.1 mouse_genomes_project 18 203236 252004 + MGP_CASTEiJ_P0048641 Cul2 protein_coding protein_coding MGP_CASTEiJ_T0048642.1 MGP_CASTEiJ_G0023325.1 mouse_genomes_project 18 242285 255687 + MGP_CASTEiJ_P0048642 Cul2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0048643.1 MGP_CASTEiJ_G0023325.1 mouse_genomes_project 18 244908 247704 + Cul2 protein_coding processed_transcript MGP_CASTEiJ_T0048644.1 MGP_CASTEiJ_G0023325.1 mouse_genomes_project 18 254356 255487 + Cul2 protein_coding processed_transcript MGP_CASTEiJ_T0003684.1 MGP_CASTEiJ_G0003318.1 mouse_genomes_project 18 35146904 35148056 - antisense antisense MGP_CASTEiJ_T0049885.1 MGP_CASTEiJ_G0023763.1 mouse_genomes_project 18 73967219 73972567 + MGP_CASTEiJ_P0049885 Cxxc1 protein_coding protein_coding MGP_CASTEiJ_T0049190.1 MGP_CASTEiJ_G0023519.1 mouse_genomes_project 18 35460142 35462955 + MGP_CASTEiJ_P0049190 Pcdhb2 protein_coding protein_coding MGP_CASTEiJ_T0049191.1 MGP_CASTEiJ_G0023519.1 mouse_genomes_project 18 35460170 35461751 + MGP_CASTEiJ_P0049191 Pcdhb2 protein_coding protein_coding MGP_CASTEiJ_T0048860.1 MGP_CASTEiJ_G0023391.1 mouse_genomes_project 18 18406869 18436779 + MGP_CASTEiJ_P0048860 Rnf138 protein_coding protein_coding MGP_CASTEiJ_T0048736.1 MGP_CASTEiJ_G0023345.1 mouse_genomes_project 18 6223311 6356925 - MGP_CASTEiJ_P0048736 Ccny protein_coding protein_coding MGP_CASTEiJ_T0048737.1 MGP_CASTEiJ_G0023345.1 mouse_genomes_project 18 6225208 6356515 - MGP_CASTEiJ_P0048737 Ccny protein_coding unknown_likely_coding MGP_CASTEiJ_T0012950.1 MGP_CASTEiJ_G0011113.1 mouse_genomes_project 18 51081118 51082017 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0049162.1 MGP_CASTEiJ_G0023501.1 mouse_genomes_project 18 35002100 35008892 + MGP_CASTEiJ_P0049162 Zmat2 protein_coding protein_coding MGP_CASTEiJ_T0049521.1 MGP_CASTEiJ_G0023652.1 mouse_genomes_project 18 55641601 55815413 - MGP_CASTEiJ_P0049521 March3 protein_coding protein_coding MGP_CASTEiJ_T0049522.1 MGP_CASTEiJ_G0023652.1 mouse_genomes_project 18 55655746 55698496 - MGP_CASTEiJ_P0049522 March3 protein_coding protein_coding MGP_CASTEiJ_T0049523.1 MGP_CASTEiJ_G0023652.1 mouse_genomes_project 18 55687151 55815380 - March3 protein_coding retained_intron MGP_CASTEiJ_T0049553.1 MGP_CASTEiJ_G0023665.1 mouse_genomes_project 18 59263633 59295414 + MGP_CASTEiJ_P0049553 Gm4951 protein_coding protein_coding MGP_CASTEiJ_T0048802.1 MGP_CASTEiJ_G0023366.1 mouse_genomes_project 18 9706488 9757805 + Ttc39c protein_coding retained_intron MGP_CASTEiJ_T0048803.1 MGP_CASTEiJ_G0023366.1 mouse_genomes_project 18 9707030 9806018 + MGP_CASTEiJ_P0048803 Ttc39c protein_coding protein_coding MGP_CASTEiJ_T0048804.1 MGP_CASTEiJ_G0023366.1 mouse_genomes_project 18 9803946 9806085 + Ttc39c protein_coding retained_intron MGP_CASTEiJ_T0098359.1 MGP_CASTEiJ_G0035290.1 mouse_genomes_project 18 59357156 59358386 + pseudogene pseudogene MGP_CASTEiJ_T0049328.1 MGP_CASTEiJ_G0023576.1 mouse_genomes_project 18 37653205 37734970 - MGP_CASTEiJ_P0049328 Nr3c1 protein_coding protein_coding MGP_CASTEiJ_T0049329.1 MGP_CASTEiJ_G0023576.1 mouse_genomes_project 18 37653207 37731593 - MGP_CASTEiJ_P0049329 Nr3c1 protein_coding protein_coding MGP_CASTEiJ_T0049330.1 MGP_CASTEiJ_G0023576.1 mouse_genomes_project 18 37654641 37734189 - MGP_CASTEiJ_P0049330 Nr3c1 protein_coding protein_coding MGP_CASTEiJ_T0049331.1 MGP_CASTEiJ_G0023576.1 mouse_genomes_project 18 37657138 37731580 - MGP_CASTEiJ_P0049331 Nr3c1 protein_coding protein_coding MGP_CASTEiJ_T0049332.1 MGP_CASTEiJ_G0023576.1 mouse_genomes_project 18 37667022 37734231 - MGP_CASTEiJ_P0049332 Nr3c1 protein_coding protein_coding MGP_CASTEiJ_T0049333.1 MGP_CASTEiJ_G0023576.1 mouse_genomes_project 18 37731203 37735448 - MGP_CASTEiJ_P0049333 Nr3c1 protein_coding protein_coding MGP_CASTEiJ_T0049334.1 MGP_CASTEiJ_G0023576.1 mouse_genomes_project 18 37731433 37733624 - MGP_CASTEiJ_P0049334 Nr3c1 protein_coding protein_coding MGP_CASTEiJ_T0049335.1 MGP_CASTEiJ_G0023576.1 mouse_genomes_project 18 37731507 37735446 - MGP_CASTEiJ_P0049335 Nr3c1 protein_coding protein_coding MGP_CASTEiJ_T0009986.1 MGP_CASTEiJ_G0008174.1 mouse_genomes_project 18 60369261 60369374 + Gm25301 miRNA miRNA MGP_CASTEiJ_T0048964.1 MGP_CASTEiJ_G0023436.1 mouse_genomes_project 18 30262343 30323881 + MGP_CASTEiJ_P0048964 Bin1 protein_coding protein_coding MGP_CASTEiJ_T0048965.1 MGP_CASTEiJ_G0023436.1 mouse_genomes_project 18 30262343 30323881 + MGP_CASTEiJ_P0048965 Bin1 protein_coding protein_coding MGP_CASTEiJ_T0009996.1 MGP_CASTEiJ_G0008184.1 mouse_genomes_project 18 74690167 74690249 - Gm25594 miRNA miRNA MGP_CASTEiJ_T0049641.1 MGP_CASTEiJ_G0023695.1 mouse_genomes_project 18 61203009 61205145 - MGP_CASTEiJ_P0049641 Adrb2 protein_coding protein_coding MGP_CASTEiJ_T0050071.1 MGP_CASTEiJ_G0023821.1 mouse_genomes_project 18 87079087 87086251 + MGP_CASTEiJ_P0050071 Cbln2 protein_coding protein_coding MGP_CASTEiJ_T0050072.1 MGP_CASTEiJ_G0023821.1 mouse_genomes_project 18 87079497 87085568 + MGP_CASTEiJ_P0050072 Cbln2 protein_coding protein_coding MGP_CASTEiJ_T0050073.1 MGP_CASTEiJ_G0023821.1 mouse_genomes_project 18 87080038 87086249 + MGP_CASTEiJ_P0050073 Cbln2 protein_coding protein_coding MGP_CASTEiJ_T0050074.1 MGP_CASTEiJ_G0023821.1 mouse_genomes_project 18 87081021 87086251 + MGP_CASTEiJ_P0050074 Cbln2 protein_coding protein_coding MGP_CASTEiJ_T0099560.1 MGP_CASTEiJ_G0036473.1 mouse_genomes_project 18 18238102 18238248 - Gm24959 snRNA snRNA MGP_CASTEiJ_T0049644.1 MGP_CASTEiJ_G0023698.1 mouse_genomes_project 18 61526761 61572104 - MGP_CASTEiJ_P0049644 Fbxo38 protein_coding protein_coding MGP_CASTEiJ_T0049645.1 MGP_CASTEiJ_G0023698.1 mouse_genomes_project 18 61528096 61572233 - MGP_CASTEiJ_P0049645 Fbxo38 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050918.1 MGP_CASTEiJ_G0024056.1 mouse_genomes_project 19 7209347 7216340 - MGP_CASTEiJ_P0050918 Tmem138 protein_coding protein_coding MGP_CASTEiJ_T0050912.1 MGP_CASTEiJ_G0024055.1 mouse_genomes_project 19 7172206 7195011 - MGP_CASTEiJ_P0050912 Tmem216 protein_coding protein_coding MGP_CASTEiJ_T0050913.1 MGP_CASTEiJ_G0024055.1 mouse_genomes_project 19 7177814 7195026 - MGP_CASTEiJ_P0050913 Tmem216 protein_coding protein_coding MGP_CASTEiJ_T0050914.1 MGP_CASTEiJ_G0024055.1 mouse_genomes_project 19 7188295 7195512 - MGP_CASTEiJ_P0050914 Tmem216 protein_coding protein_coding MGP_CASTEiJ_T0050915.1 MGP_CASTEiJ_G0024055.1 mouse_genomes_project 19 7188326 7195026 - MGP_CASTEiJ_P0050915 Tmem216 protein_coding protein_coding MGP_CASTEiJ_T0050916.1 MGP_CASTEiJ_G0024055.1 mouse_genomes_project 19 7188384 7195026 - MGP_CASTEiJ_P0050916 Tmem216 protein_coding protein_coding MGP_CASTEiJ_T0050917.1 MGP_CASTEiJ_G0024055.1 mouse_genomes_project 19 7194021 7195026 - Tmem216 protein_coding retained_intron MGP_CASTEiJ_T0052105.1 MGP_CASTEiJ_G0024482.1 mouse_genomes_project 19 58929982 58944638 + MGP_CASTEiJ_P0052105 Kcnk18 protein_coding protein_coding MGP_CASTEiJ_T0051611.1 MGP_CASTEiJ_G0024330.1 mouse_genomes_project 19 40419996 40476688 + MGP_CASTEiJ_P0051611 Ubtd1 protein_coding protein_coding MGP_CASTEiJ_T0012966.1 MGP_CASTEiJ_G0011129.1 mouse_genomes_project 19 2345991 2346186 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099602.1 MGP_CASTEiJ_G0036515.1 mouse_genomes_project 19 23863983 23864108 - Gm25176 snRNA snRNA MGP_CASTEiJ_T0050963.1 MGP_CASTEiJ_G0024073.1 mouse_genomes_project 19 7644291 7659306 - MGP_CASTEiJ_P0050963 Ms4a15 protein_coding protein_coding MGP_CASTEiJ_T0050964.1 MGP_CASTEiJ_G0024073.1 mouse_genomes_project 19 7649156 7659237 - MGP_CASTEiJ_P0050964 Ms4a15 protein_coding protein_coding MGP_CASTEiJ_T0050965.1 MGP_CASTEiJ_G0024073.1 mouse_genomes_project 19 7649242 7659286 - MGP_CASTEiJ_P0050965 Ms4a15 protein_coding protein_coding MGP_CASTEiJ_T0050854.1 MGP_CASTEiJ_G0024031.1 mouse_genomes_project 19 5718369 5731265 + MGP_CASTEiJ_P0050854 Eml3 protein_coding protein_coding MGP_CASTEiJ_T0050855.1 MGP_CASTEiJ_G0024031.1 mouse_genomes_project 19 5718606 5731035 + MGP_CASTEiJ_P0050855 Eml3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051636.1 MGP_CASTEiJ_G0024341.1 mouse_genomes_project 19 40741357 40890993 - MGP_CASTEiJ_P0051636 Crtac1 protein_coding protein_coding MGP_CASTEiJ_T0006935.1 MGP_CASTEiJ_G0005706.1 mouse_genomes_project 19 59982494 59984222 + Gm28351 lincRNA lincRNA MGP_CASTEiJ_T0051940.1 MGP_CASTEiJ_G0024437.1 mouse_genomes_project 19 52110362 52111709 + MGP_CASTEiJ_P0051940 Rpl18 protein_coding protein_coding MGP_CASTEiJ_T0051941.1 MGP_CASTEiJ_G0024437.1 mouse_genomes_project 19 52110397 52111457 + MGP_CASTEiJ_P0051941 Rpl18 protein_coding protein_coding MGP_CASTEiJ_T0051376.1 MGP_CASTEiJ_G0024248.1 mouse_genomes_project 19 31463123 31466371 - protein_coding processed_transcript MGP_CASTEiJ_T0050925.1 MGP_CASTEiJ_G0024062.1 mouse_genomes_project 19 7334377 7360033 + MGP_CASTEiJ_P0050925 Vps37c protein_coding protein_coding MGP_CASTEiJ_T0051079.1 MGP_CASTEiJ_G0024130.1 mouse_genomes_project 19 9725761 9726739 + MGP_CASTEiJ_P0051079 Olfr1450 protein_coding protein_coding MGP_CASTEiJ_T0050505.1 MGP_CASTEiJ_G0023950.1 mouse_genomes_project 19 3051962 3057228 - MGP_CASTEiJ_P0050505 Gm28374 protein_coding protein_coding MGP_CASTEiJ_T0051397.1 MGP_CASTEiJ_G0024260.1 mouse_genomes_project 19 32518907 32520252 - MGP_CASTEiJ_P0051397 Ch25h protein_coding protein_coding MGP_CASTEiJ_T0051875.1 MGP_CASTEiJ_G0024414.1 mouse_genomes_project 19 45761515 45847275 - MGP_CASTEiJ_P0051875 Nt5c2 protein_coding protein_coding MGP_CASTEiJ_T0051876.1 MGP_CASTEiJ_G0024414.1 mouse_genomes_project 19 45761515 45840240 - MGP_CASTEiJ_P0051876 Nt5c2 protein_coding protein_coding MGP_CASTEiJ_T0051877.1 MGP_CASTEiJ_G0024414.1 mouse_genomes_project 19 45762515 45896820 - MGP_CASTEiJ_P0051877 Nt5c2 protein_coding protein_coding MGP_CASTEiJ_T0051878.1 MGP_CASTEiJ_G0024414.1 mouse_genomes_project 19 45763316 45840233 - MGP_CASTEiJ_P0051878 Nt5c2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051879.1 MGP_CASTEiJ_G0024414.1 mouse_genomes_project 19 45766267 45773237 - MGP_CASTEiJ_P0051879 Nt5c2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052098.1 MGP_CASTEiJ_G0024479.1 mouse_genomes_project 19 58632915 58661379 + MGP_CASTEiJ_P0052098 Eno4 protein_coding protein_coding MGP_CASTEiJ_T0052099.1 MGP_CASTEiJ_G0024479.1 mouse_genomes_project 19 58632915 58661377 + MGP_CASTEiJ_P0052099 Eno4 protein_coding protein_coding MGP_CASTEiJ_T0052100.1 MGP_CASTEiJ_G0024479.1 mouse_genomes_project 19 58644058 58661375 + MGP_CASTEiJ_P0052100 Eno4 protein_coding protein_coding MGP_CASTEiJ_T0052101.1 MGP_CASTEiJ_G0024479.1 mouse_genomes_project 19 58646333 58660891 + MGP_CASTEiJ_P0052101 Eno4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051647.1 MGP_CASTEiJ_G0024344.1 mouse_genomes_project 19 41206498 41235164 - MGP_CASTEiJ_P0051647 Pyroxd2 protein_coding protein_coding MGP_CASTEiJ_T0006896.1 MGP_CASTEiJ_G0005679.1 mouse_genomes_project 19 26449725 26493820 + D930032P07Rik lincRNA lincRNA MGP_CASTEiJ_T0006897.1 MGP_CASTEiJ_G0005679.1 mouse_genomes_project 19 26449729 26493545 + D930032P07Rik lincRNA lincRNA MGP_CASTEiJ_T0050370.1 MGP_CASTEiJ_G0023911.1 mouse_genomes_project 19 2354827 2356981 + AI837181 protein_coding processed_transcript MGP_CASTEiJ_T0050371.1 MGP_CASTEiJ_G0023911.1 mouse_genomes_project 19 2354827 2356981 + MGP_CASTEiJ_P0050371 AI837181 protein_coding protein_coding MGP_CASTEiJ_T0051240.1 MGP_CASTEiJ_G0024208.1 mouse_genomes_project 19 24542942 24545628 + MGP_CASTEiJ_P0051240 protein_coding protein_coding MGP_CASTEiJ_T0100833.1 MGP_CASTEiJ_G0037746.1 mouse_genomes_project 19 17271753 17271885 - Gm22684 snoRNA snoRNA MGP_CASTEiJ_T0006920.1 MGP_CASTEiJ_G0005695.1 mouse_genomes_project 19 45136711 45140045 + Gm26792 lincRNA lincRNA MGP_CASTEiJ_T0050609.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3409377 3425246 + MGP_CASTEiJ_P0050609 Rasgrp2 protein_coding protein_coding MGP_CASTEiJ_T0050610.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3409492 3413672 + MGP_CASTEiJ_P0050610 Rasgrp2 protein_coding protein_coding MGP_CASTEiJ_T0050611.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3409782 3413524 + MGP_CASTEiJ_P0050611 Rasgrp2 protein_coding protein_coding MGP_CASTEiJ_T0050612.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3409900 3412620 + MGP_CASTEiJ_P0050612 Rasgrp2 protein_coding protein_coding MGP_CASTEiJ_T0050613.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3409904 3413517 + MGP_CASTEiJ_P0050613 Rasgrp2 protein_coding protein_coding MGP_CASTEiJ_T0050614.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3409910 3414376 + MGP_CASTEiJ_P0050614 Rasgrp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050615.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3409953 3412492 + Rasgrp2 protein_coding processed_transcript MGP_CASTEiJ_T0050616.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3410149 3413677 + MGP_CASTEiJ_P0050616 Rasgrp2 protein_coding protein_coding MGP_CASTEiJ_T0050617.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3410563 3412476 + Rasgrp2 protein_coding processed_transcript MGP_CASTEiJ_T0050618.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3410569 3425241 + MGP_CASTEiJ_P0050618 Rasgrp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050619.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3410583 3414460 + MGP_CASTEiJ_P0050619 Rasgrp2 protein_coding protein_coding MGP_CASTEiJ_T0050620.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3410598 3425252 + MGP_CASTEiJ_P0050620 Rasgrp2 protein_coding protein_coding MGP_CASTEiJ_T0050621.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3410600 3414860 + MGP_CASTEiJ_P0050621 Rasgrp2 protein_coding protein_coding MGP_CASTEiJ_T0050622.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3410619 3425251 + MGP_CASTEiJ_P0050622 Rasgrp2 protein_coding protein_coding MGP_CASTEiJ_T0050623.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3410659 3413651 + MGP_CASTEiJ_P0050623 Rasgrp2 protein_coding protein_coding MGP_CASTEiJ_T0050624.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3411734 3412492 + Rasgrp2 protein_coding processed_transcript MGP_CASTEiJ_T0050625.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3411741 3413677 + MGP_CASTEiJ_P0050625 Rasgrp2 protein_coding protein_coding MGP_CASTEiJ_T0050626.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3411757 3413677 + MGP_CASTEiJ_P0050626 Rasgrp2 protein_coding protein_coding MGP_CASTEiJ_T0050627.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3411758 3413677 + Rasgrp2 protein_coding processed_transcript MGP_CASTEiJ_T0050628.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3412956 3415007 + Rasgrp2 protein_coding retained_intron MGP_CASTEiJ_T0050629.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3414617 3417093 + Rasgrp2 protein_coding retained_intron MGP_CASTEiJ_T0050630.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3414776 3419700 + Rasgrp2 protein_coding retained_intron MGP_CASTEiJ_T0050631.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3414862 3424067 + Rasgrp2 protein_coding retained_intron MGP_CASTEiJ_T0050632.1 MGP_CASTEiJ_G0023969.1 mouse_genomes_project 19 3418436 3425247 + Rasgrp2 protein_coding processed_transcript MGP_CASTEiJ_T0051095.1 MGP_CASTEiJ_G0024146.1 mouse_genomes_project 19 10571333 10572293 + MGP_CASTEiJ_P0051095 Olfr1491 protein_coding protein_coding MGP_CASTEiJ_T0012987.1 MGP_CASTEiJ_G0011150.1 mouse_genomes_project 19 26540861 26541131 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006919.1 MGP_CASTEiJ_G0005694.1 mouse_genomes_project 19 44753869 44769185 + 4930505N22Rik lincRNA lincRNA MGP_CASTEiJ_T0051972.1 MGP_CASTEiJ_G0024447.1 mouse_genomes_project 19 53253945 53272312 - MGP_CASTEiJ_P0051972 Bbip1 protein_coding protein_coding MGP_CASTEiJ_T0010003.1 MGP_CASTEiJ_G0008191.1 mouse_genomes_project 19 1493098 1493156 - Mir6986 miRNA miRNA MGP_CASTEiJ_T0051989.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55200148 55409491 + MGP_CASTEiJ_P0051989 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0051990.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55200148 55409491 + MGP_CASTEiJ_P0051990 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0051991.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55200158 55409090 + MGP_CASTEiJ_P0051991 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0051992.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55200158 55409064 + MGP_CASTEiJ_P0051992 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0051993.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55200222 55408549 + MGP_CASTEiJ_P0051993 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0051994.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55200222 55399448 + MGP_CASTEiJ_P0051994 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0051995.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55200393 55408042 + MGP_CASTEiJ_P0051995 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0051996.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55200578 55387234 + MGP_CASTEiJ_P0051996 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0051997.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55200579 55387234 + MGP_CASTEiJ_P0051997 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0051998.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55200579 55387233 + MGP_CASTEiJ_P0051998 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0051999.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55200836 55385038 + Tcf7l2 protein_coding retained_intron MGP_CASTEiJ_T0052000.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55200836 55399445 + MGP_CASTEiJ_P0052000 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0052001.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55200885 55409491 + MGP_CASTEiJ_P0052001 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0052002.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55200917 55409066 + MGP_CASTEiJ_P0052002 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0052003.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55201021 55408042 + MGP_CASTEiJ_P0052003 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0052004.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55201398 55385170 + Tcf7l2 protein_coding retained_intron MGP_CASTEiJ_T0052005.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55367577 55393830 + Tcf7l2 protein_coding processed_transcript MGP_CASTEiJ_T0052006.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55368756 55393188 + MGP_CASTEiJ_P0052006 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0052007.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55369731 55409064 + MGP_CASTEiJ_P0052007 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0052008.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55369883 55387148 + Tcf7l2 protein_coding processed_transcript MGP_CASTEiJ_T0052009.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55372523 55393263 + Tcf7l2 protein_coding processed_transcript MGP_CASTEiJ_T0052010.1 MGP_CASTEiJ_G0024456.1 mouse_genomes_project 19 55372773 55393816 + MGP_CASTEiJ_P0052010 Tcf7l2 protein_coding protein_coding MGP_CASTEiJ_T0051290.1 MGP_CASTEiJ_G0024223.1 mouse_genomes_project 19 27160326 27175416 - MGP_CASTEiJ_P0051290 Plgrkt protein_coding protein_coding MGP_CASTEiJ_T0051291.1 MGP_CASTEiJ_G0024223.1 mouse_genomes_project 19 27162121 27163593 - Plgrkt protein_coding retained_intron MGP_CASTEiJ_T0051292.1 MGP_CASTEiJ_G0024223.1 mouse_genomes_project 19 27162757 27174587 - MGP_CASTEiJ_P0051292 Plgrkt protein_coding protein_coding MGP_CASTEiJ_T0051293.1 MGP_CASTEiJ_G0024223.1 mouse_genomes_project 19 27162851 27175004 - MGP_CASTEiJ_P0051293 Plgrkt protein_coding protein_coding MGP_CASTEiJ_T0051294.1 MGP_CASTEiJ_G0024223.1 mouse_genomes_project 19 27171575 27183839 - MGP_CASTEiJ_P0051294 Plgrkt protein_coding protein_coding MGP_CASTEiJ_T0051295.1 MGP_CASTEiJ_G0024223.1 mouse_genomes_project 19 27174033 27178991 - Plgrkt protein_coding processed_transcript MGP_CASTEiJ_T0051296.1 MGP_CASTEiJ_G0024223.1 mouse_genomes_project 19 27175268 27179555 - Plgrkt protein_coding processed_transcript MGP_CASTEiJ_T0051297.1 MGP_CASTEiJ_G0024223.1 mouse_genomes_project 19 27179167 27183921 - Plgrkt protein_coding processed_transcript MGP_CASTEiJ_T0051080.1 MGP_CASTEiJ_G0024131.1 mouse_genomes_project 19 9770200 9771133 + MGP_CASTEiJ_P0051080 Olfr1451 protein_coding protein_coding MGP_CASTEiJ_T0098728.1 MGP_CASTEiJ_G0035659.1 mouse_genomes_project 19 2774925 2774981 - Gm27702 sRNA sRNA MGP_CASTEiJ_T0099609.1 MGP_CASTEiJ_G0036522.1 mouse_genomes_project 19 42398732 42398839 - Gm24400 snRNA snRNA MGP_CASTEiJ_T0050176.1 MGP_CASTEiJ_G0023848.1 mouse_genomes_project 19 868491 871914 - MGP_CASTEiJ_P0050176 Gstp2 protein_coding protein_coding MGP_CASTEiJ_T0051673.1 MGP_CASTEiJ_G0024352.1 mouse_genomes_project 19 42263982 42285173 - MGP_CASTEiJ_P0051673 Cox15 protein_coding protein_coding MGP_CASTEiJ_T0051674.1 MGP_CASTEiJ_G0024352.1 mouse_genomes_project 19 42268768 42270740 - Cox15 protein_coding retained_intron MGP_CASTEiJ_T0051106.1 MGP_CASTEiJ_G0024157.1 mouse_genomes_project 19 11357044 11506045 - MGP_CASTEiJ_P0051106 Tle4 protein_coding protein_coding MGP_CASTEiJ_T0051107.1 MGP_CASTEiJ_G0024157.1 mouse_genomes_project 19 11357122 11506113 - MGP_CASTEiJ_P0051107 Tle4 protein_coding protein_coding MGP_CASTEiJ_T0006892.1 MGP_CASTEiJ_G0005677.1 mouse_genomes_project 19 23279027 23280119 - 2610016A17Rik lincRNA lincRNA MGP_CASTEiJ_T0006893.1 MGP_CASTEiJ_G0005677.1 mouse_genomes_project 19 23279065 23280102 - 2610016A17Rik lincRNA lincRNA MGP_CASTEiJ_T0006894.1 MGP_CASTEiJ_G0005677.1 mouse_genomes_project 19 23279458 23280133 - 2610016A17Rik lincRNA lincRNA MGP_CASTEiJ_T0052079.1 MGP_CASTEiJ_G0024471.1 mouse_genomes_project 19 57201583 57755085 + MGP_CASTEiJ_P0052079 Atrnl1 protein_coding protein_coding MGP_CASTEiJ_T0052080.1 MGP_CASTEiJ_G0024471.1 mouse_genomes_project 19 57201872 57395308 + MGP_CASTEiJ_P0052080 Atrnl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050920.1 MGP_CASTEiJ_G0024058.1 mouse_genomes_project 19 7231373 7245909 - MGP_CASTEiJ_P0050920 Tkfc protein_coding protein_coding MGP_CASTEiJ_T0051083.1 MGP_CASTEiJ_G0024134.1 mouse_genomes_project 19 9857958 9858864 - MGP_CASTEiJ_P0051083 Olfr1458 protein_coding protein_coding MGP_CASTEiJ_T0051507.1 MGP_CASTEiJ_G0024298.1 mouse_genomes_project 19 37493371 37562174 + MGP_CASTEiJ_P0051507 Cyp2c65 protein_coding protein_coding MGP_CASTEiJ_T0051888.1 MGP_CASTEiJ_G0024422.1 mouse_genomes_project 19 46039897 46045951 - MGP_CASTEiJ_P0051888 Calhm3 protein_coding protein_coding MGP_CASTEiJ_T0100825.1 MGP_CASTEiJ_G0037738.1 mouse_genomes_project 19 5494196 5494266 + Gm22680 snoRNA snoRNA MGP_CASTEiJ_T0098563.1 MGP_CASTEiJ_G0035494.1 mouse_genomes_project 19 41657255 41657363 - Gm22135 rRNA rRNA MGP_CASTEiJ_T0003757.1 MGP_CASTEiJ_G0003371.1 mouse_genomes_project 19 59137574 59171152 - Emx2os antisense antisense MGP_CASTEiJ_T0050324.1 MGP_CASTEiJ_G0023890.1 mouse_genomes_project 19 1886175 1891792 - MGP_CASTEiJ_P0050324 Npas4 protein_coding protein_coding MGP_CASTEiJ_T0050704.1 MGP_CASTEiJ_G0023994.1 mouse_genomes_project 19 4161277 4176937 - MGP_CASTEiJ_P0050704 Naa40 protein_coding protein_coding MGP_CASTEiJ_T0051059.1 MGP_CASTEiJ_G0024118.1 mouse_genomes_project 19 9436002 9437067 + MGP_CASTEiJ_P0051059 Olfr1442 protein_coding protein_coding MGP_CASTEiJ_T0050862.1 MGP_CASTEiJ_G0024033.1 mouse_genomes_project 19 5743178 5759537 + MGP_CASTEiJ_P0050862 Tut1 protein_coding protein_coding MGP_CASTEiJ_T0050836.1 MGP_CASTEiJ_G0024024.1 mouse_genomes_project 19 5664685 5665604 - MGP_CASTEiJ_P0050836 Uqcc3 protein_coding protein_coding MGP_CASTEiJ_T0050467.1 MGP_CASTEiJ_G0023943.1 mouse_genomes_project 19 3019902 3027062 + MGP_CASTEiJ_P0050467 Syvn1 protein_coding protein_coding MGP_CASTEiJ_T0050468.1 MGP_CASTEiJ_G0023943.1 mouse_genomes_project 19 3019964 3022530 + MGP_CASTEiJ_P0050468 Syvn1 protein_coding protein_coding MGP_CASTEiJ_T0050469.1 MGP_CASTEiJ_G0023943.1 mouse_genomes_project 19 3019988 3027059 + MGP_CASTEiJ_P0050469 Syvn1 protein_coding protein_coding MGP_CASTEiJ_T0050470.1 MGP_CASTEiJ_G0023943.1 mouse_genomes_project 19 3020391 3027061 + Syvn1 protein_coding retained_intron MGP_CASTEiJ_T0050471.1 MGP_CASTEiJ_G0023943.1 mouse_genomes_project 19 3020406 3027059 + MGP_CASTEiJ_P0050471 Syvn1 protein_coding protein_coding MGP_CASTEiJ_T0050472.1 MGP_CASTEiJ_G0023943.1 mouse_genomes_project 19 3020411 3022979 + Syvn1 protein_coding retained_intron MGP_CASTEiJ_T0050473.1 MGP_CASTEiJ_G0023943.1 mouse_genomes_project 19 3020430 3027059 + MGP_CASTEiJ_P0050473 Syvn1 protein_coding protein_coding MGP_CASTEiJ_T0050969.1 MGP_CASTEiJ_G0024076.1 mouse_genomes_project 19 7753918 7787584 - MGP_CASTEiJ_P0050969 1700017D01Rik protein_coding protein_coding MGP_CASTEiJ_T0050970.1 MGP_CASTEiJ_G0024076.1 mouse_genomes_project 19 7767403 7770884 - 1700017D01Rik protein_coding retained_intron MGP_CASTEiJ_T0050304.1 MGP_CASTEiJ_G0023882.1 mouse_genomes_project 19 1725429 1728592 + MGP_CASTEiJ_P0050304 Ccdc87 protein_coding protein_coding MGP_CASTEiJ_T0050652.1 MGP_CASTEiJ_G0023972.1 mouse_genomes_project 19 3736317 3747769 - MGP_CASTEiJ_P0050652 Rps6ka4 protein_coding protein_coding MGP_CASTEiJ_T0051208.1 MGP_CASTEiJ_G0024200.1 mouse_genomes_project 19 22419331 22421678 - MGP_CASTEiJ_P0051208 Foxd4 protein_coding protein_coding MGP_CASTEiJ_T0100824.1 MGP_CASTEiJ_G0037737.1 mouse_genomes_project 19 5493947 5494012 + Gm22744 snoRNA snoRNA MGP_CASTEiJ_T0016965.1 MGP_CASTEiJ_G0014699.1 mouse_genomes_project 19 24406052 24463357 - 4931403E22Rik processed_transcript processed_transcript MGP_CASTEiJ_T0010035.1 MGP_CASTEiJ_G0008223.1 mouse_genomes_project 19 42876167 42876228 + Mir5114 miRNA miRNA MGP_CASTEiJ_T0051978.1 MGP_CASTEiJ_G0024451.1 mouse_genomes_project 19 54598575 54607508 + MGP_CASTEiJ_P0051978 Tectb protein_coding protein_coding MGP_CASTEiJ_T0051979.1 MGP_CASTEiJ_G0024451.1 mouse_genomes_project 19 54598578 54612529 + MGP_CASTEiJ_P0051979 Tectb protein_coding protein_coding MGP_CASTEiJ_T0051980.1 MGP_CASTEiJ_G0024451.1 mouse_genomes_project 19 54598727 54613984 + MGP_CASTEiJ_P0051980 Tectb protein_coding protein_coding MGP_CASTEiJ_T0051981.1 MGP_CASTEiJ_G0024451.1 mouse_genomes_project 19 54607420 54612351 + MGP_CASTEiJ_P0051981 Tectb protein_coding protein_coding MGP_CASTEiJ_T0051982.1 MGP_CASTEiJ_G0024451.1 mouse_genomes_project 19 54607472 54608167 + Tectb protein_coding retained_intron MGP_CASTEiJ_T0051983.1 MGP_CASTEiJ_G0024451.1 mouse_genomes_project 19 54609712 54613975 + Tectb protein_coding processed_transcript MGP_CASTEiJ_T0051722.1 MGP_CASTEiJ_G0024367.1 mouse_genomes_project 19 43105942 43131773 + MGP_CASTEiJ_P0051722 Wnt8b protein_coding protein_coding MGP_CASTEiJ_T0006902.1 MGP_CASTEiJ_G0005682.1 mouse_genomes_project 19 32519924 32522900 + lincRNA lincRNA MGP_CASTEiJ_T0006903.1 MGP_CASTEiJ_G0005682.1 mouse_genomes_project 19 32519949 32528794 + lincRNA lincRNA MGP_CASTEiJ_T0006884.1 MGP_CASTEiJ_G0005670.1 mouse_genomes_project 19 7693465 7695166 - Gm28935 lincRNA lincRNA MGP_CASTEiJ_T0012996.1 MGP_CASTEiJ_G0011159.1 mouse_genomes_project 19 53092476 53092896 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0051517.1 MGP_CASTEiJ_G0024304.1 mouse_genomes_project 19 38347735 38378327 - MGP_CASTEiJ_P0051517 protein_coding protein_coding MGP_CASTEiJ_T0050235.1 MGP_CASTEiJ_G0023864.1 mouse_genomes_project 19 1073282 1075027 + MGP_CASTEiJ_P0050235 Pold4 protein_coding protein_coding MGP_CASTEiJ_T0100827.1 MGP_CASTEiJ_G0037740.1 mouse_genomes_project 19 5494722 5494848 + Snord22 snoRNA snoRNA MGP_CASTEiJ_T0051339.1 MGP_CASTEiJ_G0024234.1 mouse_genomes_project 19 27970418 28052226 - MGP_CASTEiJ_P0051339 Gldc protein_coding protein_coding MGP_CASTEiJ_T0050494.1 MGP_CASTEiJ_G0023949.1 mouse_genomes_project 19 3042887 3055300 - MGP_CASTEiJ_P0050494 Vps51 protein_coding protein_coding MGP_CASTEiJ_T0050495.1 MGP_CASTEiJ_G0023949.1 mouse_genomes_project 19 3043035 3044365 - Vps51 protein_coding retained_intron MGP_CASTEiJ_T0050496.1 MGP_CASTEiJ_G0023949.1 mouse_genomes_project 19 3043039 3052215 - MGP_CASTEiJ_P0050496 Vps51 protein_coding protein_coding MGP_CASTEiJ_T0050497.1 MGP_CASTEiJ_G0023949.1 mouse_genomes_project 19 3043096 3044196 - Vps51 protein_coding retained_intron MGP_CASTEiJ_T0050498.1 MGP_CASTEiJ_G0023949.1 mouse_genomes_project 19 3043262 3044117 - MGP_CASTEiJ_P0050498 Vps51 protein_coding protein_coding MGP_CASTEiJ_T0050499.1 MGP_CASTEiJ_G0023949.1 mouse_genomes_project 19 3043794 3044659 - Vps51 protein_coding retained_intron MGP_CASTEiJ_T0050500.1 MGP_CASTEiJ_G0023949.1 mouse_genomes_project 19 3043913 3044744 - Vps51 protein_coding retained_intron MGP_CASTEiJ_T0050501.1 MGP_CASTEiJ_G0023949.1 mouse_genomes_project 19 3045127 3052221 - Vps51 protein_coding retained_intron MGP_CASTEiJ_T0050502.1 MGP_CASTEiJ_G0023949.1 mouse_genomes_project 19 3046463 3051886 - Vps51 protein_coding retained_intron MGP_CASTEiJ_T0050503.1 MGP_CASTEiJ_G0023949.1 mouse_genomes_project 19 3046528 3052216 - MGP_CASTEiJ_P0050503 Vps51 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050504.1 MGP_CASTEiJ_G0023949.1 mouse_genomes_project 19 3050920 3052218 - MGP_CASTEiJ_P0050504 Vps51 protein_coding protein_coding MGP_CASTEiJ_T0006881.1 MGP_CASTEiJ_G0005667.1 mouse_genomes_project 19 2979365 2985209 + Gm10814 lincRNA lincRNA MGP_CASTEiJ_T0050841.1 MGP_CASTEiJ_G0024027.1 mouse_genomes_project 19 5674906 5682259 + MGP_CASTEiJ_P0050841 Ints5 protein_coding protein_coding MGP_CASTEiJ_T0050844.1 MGP_CASTEiJ_G0024027.1 mouse_genomes_project 19 5674941 5679924 + MGP_CASTEiJ_P0050844 Ints5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050848.1 MGP_CASTEiJ_G0024027.1 mouse_genomes_project 19 5676515 5682507 + Ints5 protein_coding processed_transcript MGP_CASTEiJ_T0050849.1 MGP_CASTEiJ_G0024027.1 mouse_genomes_project 19 5680276 5685170 + MGP_CASTEiJ_P0050849 Ints5 protein_coding protein_coding MGP_CASTEiJ_T0099615.1 MGP_CASTEiJ_G0036528.1 mouse_genomes_project 19 60957082 60957199 - Gm22365 snRNA snRNA MGP_CASTEiJ_T0051468.1 MGP_CASTEiJ_G0024285.1 mouse_genomes_project 19 36246450 36398220 - MGP_CASTEiJ_P0051468 Myof protein_coding protein_coding MGP_CASTEiJ_T0051469.1 MGP_CASTEiJ_G0024285.1 mouse_genomes_project 19 36246450 36398220 - MGP_CASTEiJ_P0051469 Myof protein_coding protein_coding MGP_CASTEiJ_T0051470.1 MGP_CASTEiJ_G0024285.1 mouse_genomes_project 19 36246639 36397964 - MGP_CASTEiJ_P0051470 Myof protein_coding unknown_likely_coding MGP_CASTEiJ_T0051818.1 MGP_CASTEiJ_G0024396.1 mouse_genomes_project 19 44911204 44914694 + MGP_CASTEiJ_P0051818 Elovl3 protein_coding protein_coding MGP_CASTEiJ_T0050946.1 MGP_CASTEiJ_G0024068.1 mouse_genomes_project 19 7556552 7570685 + MGP_CASTEiJ_P0050946 Prpf19 protein_coding protein_coding MGP_CASTEiJ_T0050947.1 MGP_CASTEiJ_G0024068.1 mouse_genomes_project 19 7556584 7566863 + MGP_CASTEiJ_P0050947 Prpf19 protein_coding protein_coding MGP_CASTEiJ_T0050948.1 MGP_CASTEiJ_G0024068.1 mouse_genomes_project 19 7556630 7559264 + Prpf19 protein_coding retained_intron MGP_CASTEiJ_T0050949.1 MGP_CASTEiJ_G0024068.1 mouse_genomes_project 19 7556635 7559587 + Prpf19 protein_coding retained_intron MGP_CASTEiJ_T0050950.1 MGP_CASTEiJ_G0024068.1 mouse_genomes_project 19 7556726 7560694 + Prpf19 protein_coding retained_intron MGP_CASTEiJ_T0050951.1 MGP_CASTEiJ_G0024068.1 mouse_genomes_project 19 7559971 7566837 + Prpf19 protein_coding processed_transcript MGP_CASTEiJ_T0050952.1 MGP_CASTEiJ_G0024068.1 mouse_genomes_project 19 7560695 7564093 + Prpf19 protein_coding retained_intron MGP_CASTEiJ_T0050953.1 MGP_CASTEiJ_G0024068.1 mouse_genomes_project 19 7561614 7562326 + Prpf19 protein_coding retained_intron MGP_CASTEiJ_T0051872.1 MGP_CASTEiJ_G0024413.1 mouse_genomes_project 19 45627930 45753487 + MGP_CASTEiJ_P0051872 Cnnm2 protein_coding protein_coding MGP_CASTEiJ_T0051873.1 MGP_CASTEiJ_G0024413.1 mouse_genomes_project 19 45627930 45753487 + MGP_CASTEiJ_P0051873 Cnnm2 protein_coding protein_coding MGP_CASTEiJ_T0051874.1 MGP_CASTEiJ_G0024413.1 mouse_genomes_project 19 45628063 45752816 + MGP_CASTEiJ_P0051874 Cnnm2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051961.1 MGP_CASTEiJ_G0024444.1 mouse_genomes_project 19 52899351 52946712 + MGP_CASTEiJ_P0051961 Smc3 protein_coding protein_coding MGP_CASTEiJ_T0051962.1 MGP_CASTEiJ_G0024444.1 mouse_genomes_project 19 52934158 52935187 + Smc3 protein_coding retained_intron MGP_CASTEiJ_T0051963.1 MGP_CASTEiJ_G0024444.1 mouse_genomes_project 19 52934397 52943996 + MGP_CASTEiJ_P0051963 Smc3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051964.1 MGP_CASTEiJ_G0024444.1 mouse_genomes_project 19 52942480 52945687 + Smc3 protein_coding retained_intron MGP_CASTEiJ_T0051049.1 MGP_CASTEiJ_G0024114.1 mouse_genomes_project 19 9227575 9265015 - MGP_CASTEiJ_P0051049 Dtx4 protein_coding protein_coding MGP_CASTEiJ_T0051032.1 MGP_CASTEiJ_G0024099.1 mouse_genomes_project 19 8469696 8528198 - MGP_CASTEiJ_P0051032 Stx3 protein_coding protein_coding MGP_CASTEiJ_T0051033.1 MGP_CASTEiJ_G0024099.1 mouse_genomes_project 19 8469696 8524790 - MGP_CASTEiJ_P0051033 Stx3 protein_coding protein_coding MGP_CASTEiJ_T0051034.1 MGP_CASTEiJ_G0024099.1 mouse_genomes_project 19 8472076 8524991 - MGP_CASTEiJ_P0051034 Stx3 protein_coding protein_coding MGP_CASTEiJ_T0050993.1 MGP_CASTEiJ_G0024085.1 mouse_genomes_project 19 8093273 8111649 + MGP_CASTEiJ_P0050993 Ms4a4c protein_coding protein_coding MGP_CASTEiJ_T0051131.1 MGP_CASTEiJ_G0024167.1 mouse_genomes_project 19 14500639 14951981 - MGP_CASTEiJ_P0051131 Pcsk5 protein_coding protein_coding MGP_CASTEiJ_T0051132.1 MGP_CASTEiJ_G0024167.1 mouse_genomes_project 19 14651125 14951981 - MGP_CASTEiJ_P0051132 Pcsk5 protein_coding protein_coding MGP_CASTEiJ_T0051133.1 MGP_CASTEiJ_G0024167.1 mouse_genomes_project 19 14655064 14951961 - MGP_CASTEiJ_P0051133 Pcsk5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051119.1 MGP_CASTEiJ_G0024161.1 mouse_genomes_project 19 13424690 13609885 + MGP_CASTEiJ_P0051119 Gna14 protein_coding protein_coding MGP_CASTEiJ_T0051042.1 MGP_CASTEiJ_G0024107.1 mouse_genomes_project 19 8858272 8859217 - MGP_CASTEiJ_P0051042 Olfr1428 protein_coding protein_coding MGP_CASTEiJ_T0050184.1 MGP_CASTEiJ_G0023851.1 mouse_genomes_project 19 925534 927153 + Cdk2ap2 protein_coding retained_intron MGP_CASTEiJ_T0050185.1 MGP_CASTEiJ_G0023851.1 mouse_genomes_project 19 925534 926599 + MGP_CASTEiJ_P0050185 Cdk2ap2 protein_coding protein_coding MGP_CASTEiJ_T0050186.1 MGP_CASTEiJ_G0023851.1 mouse_genomes_project 19 925535 927144 + MGP_CASTEiJ_P0050186 Cdk2ap2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050187.1 MGP_CASTEiJ_G0023851.1 mouse_genomes_project 19 925559 927151 + MGP_CASTEiJ_P0050187 Cdk2ap2 protein_coding protein_coding MGP_CASTEiJ_T0051719.1 MGP_CASTEiJ_G0024366.1 mouse_genomes_project 19 42982921 42997663 - MGP_CASTEiJ_P0051719 Scd1 protein_coding protein_coding MGP_CASTEiJ_T0051720.1 MGP_CASTEiJ_G0024366.1 mouse_genomes_project 19 42982924 42997363 - MGP_CASTEiJ_P0051720 Scd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051721.1 MGP_CASTEiJ_G0024366.1 mouse_genomes_project 19 42986207 42997413 - MGP_CASTEiJ_P0051721 Scd1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0011153.1 MGP_CASTEiJ_G0009341.1 mouse_genomes_project 19 37305085 37305205 + Gm25838 misc_RNA misc_RNA MGP_CASTEiJ_T0051666.1 MGP_CASTEiJ_G0024349.1 mouse_genomes_project 19 42137264 42140830 + MGP_CASTEiJ_P0051666 Nkx2-3 protein_coding protein_coding MGP_CASTEiJ_T0051308.1 MGP_CASTEiJ_G0024227.1 mouse_genomes_project 19 27443417 27483484 - MGP_CASTEiJ_P0051308 Ermp1 protein_coding protein_coding MGP_CASTEiJ_T0051309.1 MGP_CASTEiJ_G0024227.1 mouse_genomes_project 19 27443421 27447397 - Ermp1 protein_coding processed_transcript MGP_CASTEiJ_T0051310.1 MGP_CASTEiJ_G0024227.1 mouse_genomes_project 19 27445375 27483256 - MGP_CASTEiJ_P0051310 Ermp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051311.1 MGP_CASTEiJ_G0024227.1 mouse_genomes_project 19 27447567 27481092 - MGP_CASTEiJ_P0051311 Ermp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051312.1 MGP_CASTEiJ_G0024227.1 mouse_genomes_project 19 27447782 27448398 - Ermp1 protein_coding retained_intron MGP_CASTEiJ_T0051313.1 MGP_CASTEiJ_G0024227.1 mouse_genomes_project 19 27462702 27473614 - Ermp1 protein_coding processed_transcript MGP_CASTEiJ_T0051314.1 MGP_CASTEiJ_G0024227.1 mouse_genomes_project 19 27463647 27483459 - Ermp1 protein_coding retained_intron MGP_CASTEiJ_T0051315.1 MGP_CASTEiJ_G0024227.1 mouse_genomes_project 19 27469317 27483465 - MGP_CASTEiJ_P0051315 Ermp1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051316.1 MGP_CASTEiJ_G0024227.1 mouse_genomes_project 19 27479774 27483447 - Ermp1 protein_coding retained_intron MGP_CASTEiJ_T0051031.1 MGP_CASTEiJ_G0024098.1 mouse_genomes_project 19 8464997 8469527 + MGP_CASTEiJ_P0051031 Mrpl16 protein_coding protein_coding MGP_CASTEiJ_T0011152.1 MGP_CASTEiJ_G0009340.1 mouse_genomes_project 19 36866438 36866521 - Gm24930 misc_RNA misc_RNA MGP_CASTEiJ_T0051882.1 MGP_CASTEiJ_G0024417.1 mouse_genomes_project 19 45950021 45966951 + MGP_CASTEiJ_P0051882 Taf5 protein_coding protein_coding MGP_CASTEiJ_T0016933.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5492330 5495300 + Snhg1 processed_transcript lincRNA MGP_CASTEiJ_T0016934.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5492342 5495298 + Snhg1 processed_transcript retained_intron MGP_CASTEiJ_T0016935.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5492342 5495299 + Snhg1 processed_transcript retained_intron MGP_CASTEiJ_T0016936.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5492857 5495300 + Snhg1 processed_transcript lincRNA MGP_CASTEiJ_T0016937.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5492983 5494749 + Snhg1 processed_transcript retained_intron MGP_CASTEiJ_T0016938.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5492992 5493708 + Snhg1 processed_transcript retained_intron MGP_CASTEiJ_T0016939.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5492999 5495202 + Snhg1 processed_transcript lincRNA MGP_CASTEiJ_T0016940.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5493010 5495300 + Snhg1 processed_transcript retained_intron MGP_CASTEiJ_T0016941.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5493014 5494197 + Snhg1 processed_transcript retained_intron MGP_CASTEiJ_T0016942.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5493208 5494159 + Snhg1 processed_transcript retained_intron MGP_CASTEiJ_T0016943.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5493248 5494692 + Snhg1 processed_transcript retained_intron MGP_CASTEiJ_T0016944.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5493258 5494379 + Snhg1 processed_transcript retained_intron MGP_CASTEiJ_T0016945.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5493518 5495300 + Snhg1 processed_transcript retained_intron MGP_CASTEiJ_T0016946.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5493752 5495300 + Snhg1 processed_transcript retained_intron MGP_CASTEiJ_T0016947.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5493877 5494859 + Snhg1 processed_transcript retained_intron MGP_CASTEiJ_T0016948.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5493959 5495300 + Snhg1 processed_transcript retained_intron MGP_CASTEiJ_T0016949.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5494331 5495300 + Snhg1 processed_transcript retained_intron MGP_CASTEiJ_T0016950.1 MGP_CASTEiJ_G0014693.1 mouse_genomes_project 19 5494356 5495300 + Snhg1 processed_transcript lincRNA MGP_CASTEiJ_T0051348.1 MGP_CASTEiJ_G0024238.1 mouse_genomes_project 19 29021791 29025554 + MGP_CASTEiJ_P0051348 Cstf2t protein_coding protein_coding MGP_CASTEiJ_T0050761.1 MGP_CASTEiJ_G0024009.1 mouse_genomes_project 19 5427579 5443221 + MGP_CASTEiJ_P0050761 Chrm1 protein_coding protein_coding MGP_CASTEiJ_T0050762.1 MGP_CASTEiJ_G0024009.1 mouse_genomes_project 19 5427778 5448662 + MGP_CASTEiJ_P0050762 Chrm1 protein_coding protein_coding MGP_CASTEiJ_T0050763.1 MGP_CASTEiJ_G0024009.1 mouse_genomes_project 19 5427778 5446640 + MGP_CASTEiJ_P0050763 Chrm1 protein_coding protein_coding MGP_CASTEiJ_T0010021.1 MGP_CASTEiJ_G0008209.1 mouse_genomes_project 19 15008430 15008523 - Gm23063 miRNA miRNA MGP_CASTEiJ_T0012967.1 MGP_CASTEiJ_G0011130.1 mouse_genomes_project 19 3018016 3018148 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052047.1 MGP_CASTEiJ_G0024467.1 mouse_genomes_project 19 56445826 56554498 - MGP_CASTEiJ_P0052047 Afap1l2 protein_coding protein_coding MGP_CASTEiJ_T0052048.1 MGP_CASTEiJ_G0024467.1 mouse_genomes_project 19 56445826 56554468 - MGP_CASTEiJ_P0052048 Afap1l2 protein_coding protein_coding MGP_CASTEiJ_T0052049.1 MGP_CASTEiJ_G0024467.1 mouse_genomes_project 19 56445826 56554480 - MGP_CASTEiJ_P0052049 Afap1l2 protein_coding protein_coding MGP_CASTEiJ_T0052050.1 MGP_CASTEiJ_G0024467.1 mouse_genomes_project 19 56453822 56463559 - Afap1l2 protein_coding retained_intron MGP_CASTEiJ_T0052051.1 MGP_CASTEiJ_G0024467.1 mouse_genomes_project 19 56456807 56554498 - MGP_CASTEiJ_P0052051 Afap1l2 protein_coding protein_coding MGP_CASTEiJ_T0052052.1 MGP_CASTEiJ_G0024467.1 mouse_genomes_project 19 56466232 56547319 - MGP_CASTEiJ_P0052052 Afap1l2 protein_coding protein_coding MGP_CASTEiJ_T0052053.1 MGP_CASTEiJ_G0024467.1 mouse_genomes_project 19 56481461 56554478 - Afap1l2 protein_coding retained_intron MGP_CASTEiJ_T0099601.1 MGP_CASTEiJ_G0036514.1 mouse_genomes_project 19 23026221 23026324 - Gm26207 snRNA snRNA MGP_CASTEiJ_T0099614.1 MGP_CASTEiJ_G0036527.1 mouse_genomes_project 19 60957022 60957199 - Gm23102 snRNA snRNA MGP_CASTEiJ_T0051280.1 MGP_CASTEiJ_G0024217.1 mouse_genomes_project 19 26782534 26811839 + MGP_CASTEiJ_P0051280 Cdc37l1 protein_coding protein_coding MGP_CASTEiJ_T0051844.1 MGP_CASTEiJ_G0024402.1 mouse_genomes_project 19 45131229 45140166 - MGP_CASTEiJ_P0051844 Cuedc2 protein_coding protein_coding MGP_CASTEiJ_T0051845.1 MGP_CASTEiJ_G0024402.1 mouse_genomes_project 19 45131229 45140166 - MGP_CASTEiJ_P0051845 Cuedc2 protein_coding protein_coding MGP_CASTEiJ_T0051185.1 MGP_CASTEiJ_G0024185.1 mouse_genomes_project 19 20548419 20575549 + MGP_CASTEiJ_P0051185 Klf9 protein_coding protein_coding MGP_CASTEiJ_T0050853.1 MGP_CASTEiJ_G0024030.1 mouse_genomes_project 19 5716055 5718030 - MGP_CASTEiJ_P0050853 Rom1 protein_coding protein_coding MGP_CASTEiJ_T0051512.1 MGP_CASTEiJ_G0024301.1 mouse_genomes_project 19 37844878 37909115 + MGP_CASTEiJ_P0051512 Cyp2c39 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050353.1 MGP_CASTEiJ_G0023906.1 mouse_genomes_project 19 2293344 2295348 - MGP_CASTEiJ_P0050353 Banf1 protein_coding protein_coding MGP_CASTEiJ_T0050354.1 MGP_CASTEiJ_G0023906.1 mouse_genomes_project 19 2293344 2295050 - MGP_CASTEiJ_P0050354 Banf1 protein_coding protein_coding MGP_CASTEiJ_T0050431.1 MGP_CASTEiJ_G0023929.1 mouse_genomes_project 19 2647586 2650312 + MGP_CASTEiJ_P0050431 Kcnk7 protein_coding protein_coding MGP_CASTEiJ_T0098363.1 MGP_CASTEiJ_G0035294.1 mouse_genomes_project 19 9832405 9832904 - pseudogene pseudogene MGP_CASTEiJ_T0099594.1 MGP_CASTEiJ_G0036507.1 mouse_genomes_project 19 4182461 4182583 + Gm22113 snRNA snRNA MGP_CASTEiJ_T0050863.1 MGP_CASTEiJ_G0024034.1 mouse_genomes_project 19 5760370 5773904 + MGP_CASTEiJ_P0050863 Eef1g protein_coding protein_coding MGP_CASTEiJ_T0050864.1 MGP_CASTEiJ_G0024034.1 mouse_genomes_project 19 5760543 5766923 + MGP_CASTEiJ_P0050864 Eef1g protein_coding unknown_likely_coding MGP_CASTEiJ_T0050865.1 MGP_CASTEiJ_G0024034.1 mouse_genomes_project 19 5760900 5765839 + Eef1g protein_coding processed_transcript MGP_CASTEiJ_T0050866.1 MGP_CASTEiJ_G0024034.1 mouse_genomes_project 19 5761545 5763532 + Eef1g protein_coding retained_intron MGP_CASTEiJ_T0050867.1 MGP_CASTEiJ_G0024034.1 mouse_genomes_project 19 5761545 5766757 + Eef1g protein_coding processed_transcript MGP_CASTEiJ_T0050868.1 MGP_CASTEiJ_G0024034.1 mouse_genomes_project 19 5761545 5762837 + Eef1g protein_coding retained_intron MGP_CASTEiJ_T0050869.1 MGP_CASTEiJ_G0024034.1 mouse_genomes_project 19 5765726 5773904 + Eef1g protein_coding retained_intron MGP_CASTEiJ_T0010025.1 MGP_CASTEiJ_G0008213.1 mouse_genomes_project 19 31221873 31221963 + Mir3970 miRNA miRNA MGP_CASTEiJ_T0051986.1 MGP_CASTEiJ_G0024454.1 mouse_genomes_project 19 54722909 54741448 - MGP_CASTEiJ_P0051986 Zdhhc6 protein_coding protein_coding MGP_CASTEiJ_T0051256.1 MGP_CASTEiJ_G0024213.1 mouse_genomes_project 19 26004756 26451576 - MGP_CASTEiJ_P0051256 Glis3 protein_coding protein_coding MGP_CASTEiJ_T0051257.1 MGP_CASTEiJ_G0024213.1 mouse_genomes_project 19 26008281 26080491 - Glis3 protein_coding processed_transcript MGP_CASTEiJ_T0051258.1 MGP_CASTEiJ_G0024213.1 mouse_genomes_project 19 26008298 26451165 - MGP_CASTEiJ_P0051258 Glis3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051259.1 MGP_CASTEiJ_G0024213.1 mouse_genomes_project 19 26008361 26048795 - Glis3 protein_coding processed_transcript MGP_CASTEiJ_T0051260.1 MGP_CASTEiJ_G0024213.1 mouse_genomes_project 19 26008908 26301482 - Glis3 protein_coding retained_intron MGP_CASTEiJ_T0051261.1 MGP_CASTEiJ_G0024213.1 mouse_genomes_project 19 26009886 26030321 - Glis3 protein_coding retained_intron MGP_CASTEiJ_T0051262.1 MGP_CASTEiJ_G0024213.1 mouse_genomes_project 19 26103898 26451576 - MGP_CASTEiJ_P0051262 Glis3 protein_coding protein_coding MGP_CASTEiJ_T0051263.1 MGP_CASTEiJ_G0024213.1 mouse_genomes_project 19 26292909 26438256 - MGP_CASTEiJ_P0051263 Glis3 protein_coding protein_coding MGP_CASTEiJ_T0051264.1 MGP_CASTEiJ_G0024213.1 mouse_genomes_project 19 26292909 26450189 - MGP_CASTEiJ_P0051264 Glis3 protein_coding protein_coding MGP_CASTEiJ_T0051265.1 MGP_CASTEiJ_G0024213.1 mouse_genomes_project 19 26292909 26450189 - MGP_CASTEiJ_P0051265 Glis3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0006886.1 MGP_CASTEiJ_G0005672.1 mouse_genomes_project 19 12946935 12974843 + C130060C02Rik lincRNA lincRNA MGP_CASTEiJ_T0051283.1 MGP_CASTEiJ_G0024219.1 mouse_genomes_project 19 26894493 26938221 + MGP_CASTEiJ_P0051283 Rcl1 protein_coding protein_coding MGP_CASTEiJ_T0051284.1 MGP_CASTEiJ_G0024219.1 mouse_genomes_project 19 26919360 26937670 + MGP_CASTEiJ_P0051284 Rcl1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051150.1 MGP_CASTEiJ_G0024174.1 mouse_genomes_project 19 17627895 17648561 - MGP_CASTEiJ_P0051150 Anxa1 protein_coding protein_coding MGP_CASTEiJ_T0051151.1 MGP_CASTEiJ_G0024174.1 mouse_genomes_project 19 17628023 17648289 - Anxa1 protein_coding processed_transcript MGP_CASTEiJ_T0051152.1 MGP_CASTEiJ_G0024174.1 mouse_genomes_project 19 17628023 17633359 - Anxa1 protein_coding retained_intron MGP_CASTEiJ_T0051153.1 MGP_CASTEiJ_G0024174.1 mouse_genomes_project 19 17635416 17636240 - Anxa1 protein_coding retained_intron MGP_CASTEiJ_T0051154.1 MGP_CASTEiJ_G0024174.1 mouse_genomes_project 19 17635416 17637706 - Anxa1 protein_coding retained_intron MGP_CASTEiJ_T0051155.1 MGP_CASTEiJ_G0024174.1 mouse_genomes_project 19 17635768 17639825 - Anxa1 protein_coding retained_intron MGP_CASTEiJ_T0051156.1 MGP_CASTEiJ_G0024174.1 mouse_genomes_project 19 17637343 17648268 - Anxa1 protein_coding processed_transcript MGP_CASTEiJ_T0010028.1 MGP_CASTEiJ_G0008216.1 mouse_genomes_project 19 32899369 32899456 - Mir107 miRNA miRNA MGP_CASTEiJ_T0050655.1 MGP_CASTEiJ_G0023974.1 mouse_genomes_project 19 3818931 3822212 - Prdx5 protein_coding retained_intron MGP_CASTEiJ_T0050656.1 MGP_CASTEiJ_G0023974.1 mouse_genomes_project 19 3818940 3822340 - MGP_CASTEiJ_P0050656 Prdx5 protein_coding protein_coding MGP_CASTEiJ_T0050657.1 MGP_CASTEiJ_G0023974.1 mouse_genomes_project 19 3818984 3820536 - MGP_CASTEiJ_P0050657 Prdx5 protein_coding protein_coding MGP_CASTEiJ_T0050658.1 MGP_CASTEiJ_G0023974.1 mouse_genomes_project 19 3819080 3821852 - MGP_CASTEiJ_P0050658 Prdx5 protein_coding protein_coding MGP_CASTEiJ_T0051561.1 MGP_CASTEiJ_G0024313.1 mouse_genomes_project 19 39288934 39357176 - MGP_CASTEiJ_P0051561 Blnk protein_coding protein_coding MGP_CASTEiJ_T0051562.1 MGP_CASTEiJ_G0024313.1 mouse_genomes_project 19 39288934 39356789 - MGP_CASTEiJ_P0051562 Blnk protein_coding protein_coding MGP_CASTEiJ_T0051563.1 MGP_CASTEiJ_G0024313.1 mouse_genomes_project 19 39326048 39357176 - Blnk protein_coding retained_intron MGP_CASTEiJ_T0010016.1 MGP_CASTEiJ_G0008204.1 mouse_genomes_project 19 6041770 6041852 - Gm24543 miRNA miRNA MGP_CASTEiJ_T0006907.1 MGP_CASTEiJ_G0005686.1 mouse_genomes_project 19 36408196 36411185 - I830134H01Rik lincRNA lincRNA MGP_CASTEiJ_T0006908.1 MGP_CASTEiJ_G0005686.1 mouse_genomes_project 19 36408306 36411185 - I830134H01Rik lincRNA lincRNA MGP_CASTEiJ_T0003726.1 MGP_CASTEiJ_G0003348.1 mouse_genomes_project 19 3360675 3371370 - Gm14966 antisense antisense MGP_CASTEiJ_T0003727.1 MGP_CASTEiJ_G0003348.1 mouse_genomes_project 19 3360751 3371594 - Gm14966 antisense antisense MGP_CASTEiJ_T0050165.1 MGP_CASTEiJ_G0023846.1 mouse_genomes_project 19 828756 829272 - Ndufv1 protein_coding retained_intron MGP_CASTEiJ_T0050166.1 MGP_CASTEiJ_G0023846.1 mouse_genomes_project 19 828757 833875 - MGP_CASTEiJ_P0050166 Ndufv1 protein_coding protein_coding MGP_CASTEiJ_T0050167.1 MGP_CASTEiJ_G0023846.1 mouse_genomes_project 19 828815 833926 - MGP_CASTEiJ_P0050167 Ndufv1 protein_coding protein_coding MGP_CASTEiJ_T0050168.1 MGP_CASTEiJ_G0023846.1 mouse_genomes_project 19 829548 831105 - Ndufv1 protein_coding retained_intron MGP_CASTEiJ_T0050169.1 MGP_CASTEiJ_G0023846.1 mouse_genomes_project 19 829618 830395 - Ndufv1 protein_coding retained_intron MGP_CASTEiJ_T0050170.1 MGP_CASTEiJ_G0023846.1 mouse_genomes_project 19 830006 833957 - Ndufv1 protein_coding retained_intron MGP_CASTEiJ_T0050171.1 MGP_CASTEiJ_G0023846.1 mouse_genomes_project 19 830624 833961 - MGP_CASTEiJ_P0050171 Ndufv1 protein_coding protein_coding MGP_CASTEiJ_T0050172.1 MGP_CASTEiJ_G0023846.1 mouse_genomes_project 19 830675 833918 - MGP_CASTEiJ_P0050172 Ndufv1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050173.1 MGP_CASTEiJ_G0023846.1 mouse_genomes_project 19 830719 834012 - MGP_CASTEiJ_P0050173 Ndufv1 protein_coding protein_coding MGP_CASTEiJ_T0050174.1 MGP_CASTEiJ_G0023846.1 mouse_genomes_project 19 831258 833914 - Ndufv1 protein_coding retained_intron MGP_CASTEiJ_T0051081.1 MGP_CASTEiJ_G0024132.1 mouse_genomes_project 19 9819204 9820128 + MGP_CASTEiJ_P0051081 Olfr1454 protein_coding protein_coding MGP_CASTEiJ_T0051369.1 MGP_CASTEiJ_G0024245.1 mouse_genomes_project 19 30702072 30745703 - MGP_CASTEiJ_P0051369 Atad1 protein_coding protein_coding MGP_CASTEiJ_T0051088.1 MGP_CASTEiJ_G0024139.1 mouse_genomes_project 19 10066735 10067659 - MGP_CASTEiJ_P0051088 Olfr1465 protein_coding protein_coding MGP_CASTEiJ_T0012980.1 MGP_CASTEiJ_G0011143.1 mouse_genomes_project 19 13402354 13403054 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0051328.1 MGP_CASTEiJ_G0024232.1 mouse_genomes_project 19 27869489 27871717 + MGP_CASTEiJ_P0051328 Trpd52l3 protein_coding protein_coding MGP_CASTEiJ_T0052046.1 MGP_CASTEiJ_G0024466.1 mouse_genomes_project 19 56404304 56445544 + MGP_CASTEiJ_P0052046 Vwa2 protein_coding protein_coding MGP_CASTEiJ_T0051658.1 MGP_CASTEiJ_G0024347.1 mouse_genomes_project 19 41953059 42016765 + MGP_CASTEiJ_P0051658 Cnnm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051659.1 MGP_CASTEiJ_G0024347.1 mouse_genomes_project 19 41953132 42016810 + MGP_CASTEiJ_P0051659 Cnnm1 protein_coding protein_coding MGP_CASTEiJ_T0051660.1 MGP_CASTEiJ_G0024347.1 mouse_genomes_project 19 41953141 42016765 + MGP_CASTEiJ_P0051660 Cnnm1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051287.1 MGP_CASTEiJ_G0024221.1 mouse_genomes_project 19 27130578 27135973 - MGP_CASTEiJ_P0051287 Insl6 protein_coding protein_coding MGP_CASTEiJ_T0050908.1 MGP_CASTEiJ_G0024051.1 mouse_genomes_project 19 7095547 7097613 - MGP_CASTEiJ_P0050908 Lrrc10b protein_coding protein_coding MGP_CASTEiJ_T0003718.1 MGP_CASTEiJ_G0003343.1 mouse_genomes_project 19 821987 822463 - Gm16312 antisense antisense MGP_CASTEiJ_T0051101.1 MGP_CASTEiJ_G0024152.1 mouse_genomes_project 19 10705241 10706266 - MGP_CASTEiJ_P0051101 Olfr1500 protein_coding protein_coding MGP_CASTEiJ_T0100823.1 MGP_CASTEiJ_G0037736.1 mouse_genomes_project 19 5493723 5493799 + Gm24453 snoRNA snoRNA MGP_CASTEiJ_T0050339.1 MGP_CASTEiJ_G0023900.1 mouse_genomes_project 19 2011272 2024148 - MGP_CASTEiJ_P0050339 Klc2 protein_coding protein_coding MGP_CASTEiJ_T0050340.1 MGP_CASTEiJ_G0023900.1 mouse_genomes_project 19 2011272 2023885 - MGP_CASTEiJ_P0050340 Klc2 protein_coding protein_coding MGP_CASTEiJ_T0050341.1 MGP_CASTEiJ_G0023900.1 mouse_genomes_project 19 2011272 2023888 - MGP_CASTEiJ_P0050341 Klc2 protein_coding protein_coding MGP_CASTEiJ_T0050342.1 MGP_CASTEiJ_G0023900.1 mouse_genomes_project 19 2011274 2023886 - MGP_CASTEiJ_P0050342 Klc2 protein_coding protein_coding MGP_CASTEiJ_T0050343.1 MGP_CASTEiJ_G0023900.1 mouse_genomes_project 19 2013745 2015073 - Klc2 protein_coding retained_intron MGP_CASTEiJ_T0050344.1 MGP_CASTEiJ_G0023900.1 mouse_genomes_project 19 2015019 2017038 - Klc2 protein_coding retained_intron MGP_CASTEiJ_T0050345.1 MGP_CASTEiJ_G0023900.1 mouse_genomes_project 19 2015959 2017577 - Klc2 protein_coding retained_intron MGP_CASTEiJ_T0050346.1 MGP_CASTEiJ_G0023900.1 mouse_genomes_project 19 2019102 2019603 - Klc2 protein_coding retained_intron MGP_CASTEiJ_T0050347.1 MGP_CASTEiJ_G0023900.1 mouse_genomes_project 19 2019402 2023174 - MGP_CASTEiJ_P0050347 Klc2 protein_coding protein_coding MGP_CASTEiJ_T0100841.1 MGP_CASTEiJ_G0037754.1 mouse_genomes_project 19 41179442 41179572 - Gm25216 snoRNA snoRNA MGP_CASTEiJ_T0051068.1 MGP_CASTEiJ_G0024121.1 mouse_genomes_project 19 9529467 9566095 - MGP_CASTEiJ_P0051068 Zfp91 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051070.1 MGP_CASTEiJ_G0024121.1 mouse_genomes_project 19 9532827 9566095 - MGP_CASTEiJ_P0051070 Zfp91 protein_coding protein_coding MGP_CASTEiJ_T0051071.1 MGP_CASTEiJ_G0024121.1 mouse_genomes_project 19 9537353 9558797 - Zfp91 protein_coding retained_intron MGP_CASTEiJ_T0051958.1 MGP_CASTEiJ_G0024441.1 mouse_genomes_project 19 52644029 52644230 - MGP_CASTEiJ_P0051958 Gm10197 protein_coding protein_coding MGP_CASTEiJ_T0100828.1 MGP_CASTEiJ_G0037741.1 mouse_genomes_project 19 5674553 5674701 - Snora57 snoRNA snoRNA MGP_CASTEiJ_T0051378.1 MGP_CASTEiJ_G0024250.1 mouse_genomes_project 19 31577372 31598009 - MGP_CASTEiJ_P0051378 protein_coding protein_coding MGP_CASTEiJ_T0050204.1 MGP_CASTEiJ_G0023854.1 mouse_genomes_project 19 965415 971371 - MGP_CASTEiJ_P0050204 Cabp4 protein_coding protein_coding MGP_CASTEiJ_T0050205.1 MGP_CASTEiJ_G0023854.1 mouse_genomes_project 19 965973 970599 - MGP_CASTEiJ_P0050205 Cabp4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051085.1 MGP_CASTEiJ_G0024136.1 mouse_genomes_project 19 9907697 9908639 + MGP_CASTEiJ_P0051085 Olfr1461 protein_coding protein_coding MGP_CASTEiJ_T0051015.1 MGP_CASTEiJ_G0024092.1 mouse_genomes_project 19 8303025 8311047 - MGP_CASTEiJ_P0051015 Ms4a2 protein_coding protein_coding MGP_CASTEiJ_T0051016.1 MGP_CASTEiJ_G0024092.1 mouse_genomes_project 19 8304456 8311082 - MGP_CASTEiJ_P0051016 Ms4a2 protein_coding protein_coding MGP_CASTEiJ_T0051017.1 MGP_CASTEiJ_G0024092.1 mouse_genomes_project 19 8304692 8311006 - MGP_CASTEiJ_P0051017 Ms4a2 protein_coding protein_coding MGP_CASTEiJ_T0051018.1 MGP_CASTEiJ_G0024092.1 mouse_genomes_project 19 8304972 8311022 - MGP_CASTEiJ_P0051018 Ms4a2 protein_coding protein_coding MGP_CASTEiJ_T0051019.1 MGP_CASTEiJ_G0024092.1 mouse_genomes_project 19 8306423 8311051 - Ms4a2 protein_coding processed_transcript MGP_CASTEiJ_T0051402.1 MGP_CASTEiJ_G0024263.1 mouse_genomes_project 19 32680764 32693529 - MGP_CASTEiJ_P0051402 protein_coding protein_coding MGP_CASTEiJ_T0051403.1 MGP_CASTEiJ_G0024263.1 mouse_genomes_project 19 32680766 32708215 - MGP_CASTEiJ_P0051403 protein_coding protein_coding MGP_CASTEiJ_T0050520.1 MGP_CASTEiJ_G0023954.1 mouse_genomes_project 19 3086926 3096853 + MGP_CASTEiJ_P0050520 Naaladl1 protein_coding protein_coding MGP_CASTEiJ_T0010034.1 MGP_CASTEiJ_G0008222.1 mouse_genomes_project 19 40738414 40738503 - Mir3085 miRNA miRNA MGP_CASTEiJ_T0050837.1 MGP_CASTEiJ_G0024025.1 mouse_genomes_project 19 5669073 5679918 + MGP_CASTEiJ_P0050837 Lbhd1 protein_coding protein_coding MGP_CASTEiJ_T0050838.1 MGP_CASTEiJ_G0024025.1 mouse_genomes_project 19 5669265 5673054 + Lbhd1 protein_coding retained_intron MGP_CASTEiJ_T0050839.1 MGP_CASTEiJ_G0024025.1 mouse_genomes_project 19 5669271 5673271 + MGP_CASTEiJ_P0050839 Lbhd1 protein_coding protein_coding MGP_CASTEiJ_T0050847.1 MGP_CASTEiJ_G0024025.1 mouse_genomes_project 19 5675293 5676645 + Lbhd1 protein_coding processed_transcript MGP_CASTEiJ_T0051100.1 MGP_CASTEiJ_G0024151.1 mouse_genomes_project 19 10692395 10693447 - MGP_CASTEiJ_P0051100 Olfr1499 protein_coding protein_coding MGP_CASTEiJ_T0051192.1 MGP_CASTEiJ_G0024192.1 mouse_genomes_project 19 21214938 21415465 + MGP_CASTEiJ_P0051192 Apba1 protein_coding protein_coding MGP_CASTEiJ_T0050435.1 MGP_CASTEiJ_G0023932.1 mouse_genomes_project 19 2671681 2673247 - MGP_CASTEiJ_P0050435 Fam89b protein_coding protein_coding MGP_CASTEiJ_T0050436.1 MGP_CASTEiJ_G0023932.1 mouse_genomes_project 19 2671681 2673227 - MGP_CASTEiJ_P0050436 Fam89b protein_coding protein_coding MGP_CASTEiJ_T0050437.1 MGP_CASTEiJ_G0023932.1 mouse_genomes_project 19 2671681 2673245 - MGP_CASTEiJ_P0050437 Fam89b protein_coding protein_coding MGP_CASTEiJ_T0101565.1 MGP_CASTEiJ_G0038440.1 mouse_genomes_project 19 9614580 9615323 + transcribed_processed_pseudogene processed_transcript MGP_CASTEiJ_T0101566.1 MGP_CASTEiJ_G0038440.1 mouse_genomes_project 19 9614764 9615103 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_CASTEiJ_T0099607.1 MGP_CASTEiJ_G0036520.1 mouse_genomes_project 19 35768682 35768788 + Gm23026 snRNA snRNA MGP_CASTEiJ_T0051055.1 MGP_CASTEiJ_G0024117.1 mouse_genomes_project 19 9391383 9411133 + MGP_CASTEiJ_P0051055 Glyat protein_coding protein_coding MGP_CASTEiJ_T0051056.1 MGP_CASTEiJ_G0024117.1 mouse_genomes_project 19 9391638 9407950 + Glyat protein_coding retained_intron MGP_CASTEiJ_T0051057.1 MGP_CASTEiJ_G0024117.1 mouse_genomes_project 19 9391638 9393676 + Glyat protein_coding processed_transcript MGP_CASTEiJ_T0051058.1 MGP_CASTEiJ_G0024117.1 mouse_genomes_project 19 9397933 9409871 + Glyat protein_coding processed_transcript MGP_CASTEiJ_T0016907.1 MGP_CASTEiJ_G0014686.1 mouse_genomes_project 19 588452 649189 - Gm16066 processed_transcript processed_transcript MGP_CASTEiJ_T0051322.1 MGP_CASTEiJ_G0024230.1 mouse_genomes_project 19 27645392 27649961 - MGP_CASTEiJ_P0051322 Ranbp6 protein_coding protein_coding MGP_CASTEiJ_T0016924.1 MGP_CASTEiJ_G0014688.1 mouse_genomes_project 19 1291976 1301440 + A930001C03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016925.1 MGP_CASTEiJ_G0014688.1 mouse_genomes_project 19 1292531 1301297 + A930001C03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016926.1 MGP_CASTEiJ_G0014688.1 mouse_genomes_project 19 1296830 1300977 + A930001C03Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016927.1 MGP_CASTEiJ_G0014688.1 mouse_genomes_project 19 1299926 1301446 + A930001C03Rik processed_transcript retained_intron MGP_CASTEiJ_T0050757.1 MGP_CASTEiJ_G0024006.1 mouse_genomes_project 19 4891268 4892586 - protein_coding processed_transcript MGP_CASTEiJ_T0051415.1 MGP_CASTEiJ_G0024269.1 mouse_genomes_project 19 34234801 34256127 + MGP_CASTEiJ_P0051415 Rpp30 protein_coding protein_coding MGP_CASTEiJ_T0051580.1 MGP_CASTEiJ_G0024323.1 mouse_genomes_project 19 40182964 40220769 - MGP_CASTEiJ_P0051580 Arhgap19 protein_coding protein_coding MGP_CASTEiJ_T0051581.1 MGP_CASTEiJ_G0024323.1 mouse_genomes_project 19 40182967 40220806 - MGP_CASTEiJ_P0051581 Arhgap19 protein_coding protein_coding MGP_CASTEiJ_T0051582.1 MGP_CASTEiJ_G0024323.1 mouse_genomes_project 19 40186126 40197772 - MGP_CASTEiJ_P0051582 Arhgap19 protein_coding protein_coding MGP_CASTEiJ_T0051583.1 MGP_CASTEiJ_G0024323.1 mouse_genomes_project 19 40186321 40220769 - MGP_CASTEiJ_P0051583 Arhgap19 protein_coding protein_coding MGP_CASTEiJ_T0050875.1 MGP_CASTEiJ_G0024038.1 mouse_genomes_project 19 6447293 6452544 + MGP_CASTEiJ_P0050875 Scgb2a2 protein_coding protein_coding MGP_CASTEiJ_T0050338.1 MGP_CASTEiJ_G0023899.1 mouse_genomes_project 19 2002731 2010523 - MGP_CASTEiJ_P0050338 Rab1b protein_coding protein_coding MGP_CASTEiJ_T0051209.1 MGP_CASTEiJ_G0024201.1 mouse_genomes_project 19 22444252 22494394 - MGP_CASTEiJ_P0051209 Cbwd1 protein_coding protein_coding MGP_CASTEiJ_T0051880.1 MGP_CASTEiJ_G0024415.1 mouse_genomes_project 19 45896364 45907125 + MGP_CASTEiJ_P0051880 Ina protein_coding protein_coding MGP_CASTEiJ_T0051564.1 MGP_CASTEiJ_G0024314.1 mouse_genomes_project 19 39393687 39422039 + MGP_CASTEiJ_P0051564 Dntt protein_coding protein_coding MGP_CASTEiJ_T0050104.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 554825 598555 + MGP_CASTEiJ_P0050104 Suv420h1 protein_coding protein_coding MGP_CASTEiJ_T0050105.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 554825 606109 + MGP_CASTEiJ_P0050105 Suv420h1 protein_coding protein_coding MGP_CASTEiJ_T0050106.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 554825 608019 + MGP_CASTEiJ_P0050106 Suv420h1 protein_coding protein_coding MGP_CASTEiJ_T0050107.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 554825 608018 + MGP_CASTEiJ_P0050107 Suv420h1 protein_coding protein_coding MGP_CASTEiJ_T0050108.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 554825 606109 + MGP_CASTEiJ_P0050108 Suv420h1 protein_coding protein_coding MGP_CASTEiJ_T0050109.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 554927 596061 + MGP_CASTEiJ_P0050109 Suv420h1 protein_coding protein_coding MGP_CASTEiJ_T0050110.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 555437 598561 + MGP_CASTEiJ_P0050110 Suv420h1 protein_coding protein_coding MGP_CASTEiJ_T0050111.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 555522 594793 + MGP_CASTEiJ_P0050111 Suv420h1 protein_coding protein_coding MGP_CASTEiJ_T0050112.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 555538 571397 + Suv420h1 protein_coding retained_intron MGP_CASTEiJ_T0050113.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 555553 594238 + MGP_CASTEiJ_P0050113 Suv420h1 protein_coding protein_coding MGP_CASTEiJ_T0050114.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 555570 606406 + MGP_CASTEiJ_P0050114 Suv420h1 protein_coding protein_coding MGP_CASTEiJ_T0050115.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 555573 581686 + MGP_CASTEiJ_P0050115 Suv420h1 protein_coding protein_coding MGP_CASTEiJ_T0050116.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 555622 598533 + MGP_CASTEiJ_P0050116 Suv420h1 protein_coding protein_coding MGP_CASTEiJ_T0050117.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 555625 605365 + MGP_CASTEiJ_P0050117 Suv420h1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050118.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 555637 581704 + MGP_CASTEiJ_P0050118 Suv420h1 protein_coding protein_coding MGP_CASTEiJ_T0050119.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 555951 585129 + MGP_CASTEiJ_P0050119 Suv420h1 protein_coding protein_coding MGP_CASTEiJ_T0050120.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 580238 589351 + Suv420h1 protein_coding retained_intron MGP_CASTEiJ_T0050121.1 MGP_CASTEiJ_G0023835.1 mouse_genomes_project 19 594129 597128 + Suv420h1 protein_coding retained_intron MGP_CASTEiJ_T0051409.1 MGP_CASTEiJ_G0024268.1 mouse_genomes_project 19 34097068 34199350 - MGP_CASTEiJ_P0051409 Htr7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051410.1 MGP_CASTEiJ_G0024268.1 mouse_genomes_project 19 34097068 34199350 - MGP_CASTEiJ_P0051410 Htr7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051411.1 MGP_CASTEiJ_G0024268.1 mouse_genomes_project 19 34097068 34199330 - MGP_CASTEiJ_P0051411 Htr7 protein_coding protein_coding MGP_CASTEiJ_T0051412.1 MGP_CASTEiJ_G0024268.1 mouse_genomes_project 19 34097079 34199358 - MGP_CASTEiJ_P0051412 Htr7 protein_coding protein_coding MGP_CASTEiJ_T0051413.1 MGP_CASTEiJ_G0024268.1 mouse_genomes_project 19 34098155 34199497 - MGP_CASTEiJ_P0051413 Htr7 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051414.1 MGP_CASTEiJ_G0024268.1 mouse_genomes_project 19 34098650 34199363 - MGP_CASTEiJ_P0051414 Htr7 protein_coding protein_coding MGP_CASTEiJ_T0003733.1 MGP_CASTEiJ_G0003352.1 mouse_genomes_project 19 4325935 4329742 + antisense antisense MGP_CASTEiJ_T0011146.1 MGP_CASTEiJ_G0009334.1 mouse_genomes_project 19 14107657 14107918 - Gm27796 misc_RNA misc_RNA MGP_CASTEiJ_T0050480.1 MGP_CASTEiJ_G0023948.1 mouse_genomes_project 19 3037316 3042854 - MGP_CASTEiJ_P0050480 Tm7sf2 protein_coding protein_coding MGP_CASTEiJ_T0050481.1 MGP_CASTEiJ_G0023948.1 mouse_genomes_project 19 3037324 3042849 - MGP_CASTEiJ_P0050481 Tm7sf2 protein_coding protein_coding MGP_CASTEiJ_T0050482.1 MGP_CASTEiJ_G0023948.1 mouse_genomes_project 19 3037324 3042888 - MGP_CASTEiJ_P0050482 Tm7sf2 protein_coding protein_coding MGP_CASTEiJ_T0050483.1 MGP_CASTEiJ_G0023948.1 mouse_genomes_project 19 3037325 3042888 - MGP_CASTEiJ_P0050483 Tm7sf2 protein_coding protein_coding MGP_CASTEiJ_T0050484.1 MGP_CASTEiJ_G0023948.1 mouse_genomes_project 19 3037404 3042849 - MGP_CASTEiJ_P0050484 Tm7sf2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050485.1 MGP_CASTEiJ_G0023948.1 mouse_genomes_project 19 3038269 3042831 - MGP_CASTEiJ_P0050485 Tm7sf2 protein_coding protein_coding MGP_CASTEiJ_T0050486.1 MGP_CASTEiJ_G0023948.1 mouse_genomes_project 19 3038540 3042854 - MGP_CASTEiJ_P0050486 Tm7sf2 protein_coding protein_coding MGP_CASTEiJ_T0050487.1 MGP_CASTEiJ_G0023948.1 mouse_genomes_project 19 3040512 3042822 - Tm7sf2 protein_coding retained_intron MGP_CASTEiJ_T0050488.1 MGP_CASTEiJ_G0023948.1 mouse_genomes_project 19 3041140 3042896 - Tm7sf2 protein_coding retained_intron MGP_CASTEiJ_T0050489.1 MGP_CASTEiJ_G0023948.1 mouse_genomes_project 19 3041157 3042913 - Tm7sf2 protein_coding retained_intron MGP_CASTEiJ_T0050490.1 MGP_CASTEiJ_G0023948.1 mouse_genomes_project 19 3041196 3042144 - Tm7sf2 protein_coding retained_intron MGP_CASTEiJ_T0050491.1 MGP_CASTEiJ_G0023948.1 mouse_genomes_project 19 3041198 3042901 - MGP_CASTEiJ_P0050491 Tm7sf2 protein_coding protein_coding MGP_CASTEiJ_T0050492.1 MGP_CASTEiJ_G0023948.1 mouse_genomes_project 19 3041598 3042607 - Tm7sf2 protein_coding retained_intron MGP_CASTEiJ_T0050493.1 MGP_CASTEiJ_G0023948.1 mouse_genomes_project 19 3042214 3043419 - MGP_CASTEiJ_P0050493 Tm7sf2 protein_coding protein_coding MGP_CASTEiJ_T0050693.1 MGP_CASTEiJ_G0023988.1 mouse_genomes_project 19 3916876 3941250 - MGP_CASTEiJ_P0050693 Fermt3 protein_coding protein_coding MGP_CASTEiJ_T0016975.1 MGP_CASTEiJ_G0014702.1 mouse_genomes_project 19 41263591 41267526 + processed_transcript processed_transcript MGP_CASTEiJ_T0016976.1 MGP_CASTEiJ_G0014702.1 mouse_genomes_project 19 41263669 41264839 + processed_transcript processed_transcript MGP_CASTEiJ_T0099597.1 MGP_CASTEiJ_G0036510.1 mouse_genomes_project 19 12640456 12640563 + Gm24319 snRNA snRNA MGP_CASTEiJ_T0051279.1 MGP_CASTEiJ_G0024216.1 mouse_genomes_project 19 26756109 26758969 + MGP_CASTEiJ_P0051279 Plpp6 protein_coding protein_coding MGP_CASTEiJ_T0098362.1 MGP_CASTEiJ_G0035293.1 mouse_genomes_project 19 9790783 9791709 + pseudogene pseudogene MGP_CASTEiJ_T0051745.1 MGP_CASTEiJ_G0024377.1 mouse_genomes_project 19 43673663 43689644 + MGP_CASTEiJ_P0051745 Lzts2 protein_coding protein_coding MGP_CASTEiJ_T0051746.1 MGP_CASTEiJ_G0024377.1 mouse_genomes_project 19 43673697 43689644 + MGP_CASTEiJ_P0051746 Lzts2 protein_coding protein_coding MGP_CASTEiJ_T0051747.1 MGP_CASTEiJ_G0024377.1 mouse_genomes_project 19 43678037 43689644 + MGP_CASTEiJ_P0051747 Lzts2 protein_coding protein_coding MGP_CASTEiJ_T0052035.1 MGP_CASTEiJ_G0024463.1 mouse_genomes_project 19 56251752 56254233 + MGP_CASTEiJ_P0052035 Adrb1 protein_coding protein_coding MGP_CASTEiJ_T0003734.1 MGP_CASTEiJ_G0003353.1 mouse_genomes_project 19 8242612 8243355 + Gm19261 antisense antisense MGP_CASTEiJ_T0051619.1 MGP_CASTEiJ_G0024335.1 mouse_genomes_project 19 40535847 40570895 + MGP_CASTEiJ_P0051619 Pi4k2a protein_coding protein_coding MGP_CASTEiJ_T0051620.1 MGP_CASTEiJ_G0024335.1 mouse_genomes_project 19 40535879 40566731 + MGP_CASTEiJ_P0051620 Pi4k2a protein_coding unknown_likely_coding MGP_CASTEiJ_T0006911.1 MGP_CASTEiJ_G0005689.1 mouse_genomes_project 19 42132618 42134169 - Gm20467 lincRNA lincRNA MGP_CASTEiJ_T0051569.1 MGP_CASTEiJ_G0024318.1 mouse_genomes_project 19 39646621 39763406 - MGP_CASTEiJ_P0051569 Pik3ap1 protein_coding protein_coding MGP_CASTEiJ_T0052102.1 MGP_CASTEiJ_G0024480.1 mouse_genomes_project 19 58664943 58768064 - MGP_CASTEiJ_P0052102 Shtn1 protein_coding protein_coding MGP_CASTEiJ_T0051137.1 MGP_CASTEiJ_G0024169.1 mouse_genomes_project 19 15779286 15783620 + Nmrk1 protein_coding retained_intron MGP_CASTEiJ_T0051138.1 MGP_CASTEiJ_G0024169.1 mouse_genomes_project 19 15779286 15799499 + MGP_CASTEiJ_P0051138 Nmrk1 protein_coding protein_coding MGP_CASTEiJ_T0051139.1 MGP_CASTEiJ_G0024169.1 mouse_genomes_project 19 15779286 15799345 + MGP_CASTEiJ_P0051139 Nmrk1 protein_coding protein_coding MGP_CASTEiJ_T0051140.1 MGP_CASTEiJ_G0024169.1 mouse_genomes_project 19 15779295 15788453 + MGP_CASTEiJ_P0051140 Nmrk1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051141.1 MGP_CASTEiJ_G0024169.1 mouse_genomes_project 19 15779298 15784534 + Nmrk1 protein_coding retained_intron MGP_CASTEiJ_T0050884.1 MGP_CASTEiJ_G0024043.1 mouse_genomes_project 19 6659546 6677608 + MGP_CASTEiJ_P0050884 Fads3 protein_coding protein_coding MGP_CASTEiJ_T0098565.1 MGP_CASTEiJ_G0035496.1 mouse_genomes_project 19 47190975 47191086 - Gm23857 rRNA rRNA MGP_CASTEiJ_T0051300.1 MGP_CASTEiJ_G0024226.1 mouse_genomes_project 19 27355611 27442038 + MGP_CASTEiJ_P0051300 Ric1 protein_coding protein_coding MGP_CASTEiJ_T0051301.1 MGP_CASTEiJ_G0024226.1 mouse_genomes_project 19 27355664 27396169 + MGP_CASTEiJ_P0051301 Ric1 protein_coding protein_coding MGP_CASTEiJ_T0051302.1 MGP_CASTEiJ_G0024226.1 mouse_genomes_project 19 27355711 27414038 + Ric1 protein_coding retained_intron MGP_CASTEiJ_T0051303.1 MGP_CASTEiJ_G0024226.1 mouse_genomes_project 19 27355765 27456592 + MGP_CASTEiJ_P0051303 Ric1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051304.1 MGP_CASTEiJ_G0024226.1 mouse_genomes_project 19 27366268 27437563 + MGP_CASTEiJ_P0051304 Ric1 protein_coding protein_coding MGP_CASTEiJ_T0051305.1 MGP_CASTEiJ_G0024226.1 mouse_genomes_project 19 27427431 27438549 + MGP_CASTEiJ_P0051305 Ric1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051306.1 MGP_CASTEiJ_G0024226.1 mouse_genomes_project 19 27429157 27433268 + Ric1 protein_coding retained_intron MGP_CASTEiJ_T0051307.1 MGP_CASTEiJ_G0024226.1 mouse_genomes_project 19 27429741 27439260 + MGP_CASTEiJ_P0051307 Ric1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050521.1 MGP_CASTEiJ_G0023955.1 mouse_genomes_project 19 3097030 3099619 - MGP_CASTEiJ_P0050521 Sac3d1 protein_coding protein_coding MGP_CASTEiJ_T0051859.1 MGP_CASTEiJ_G0024407.1 mouse_genomes_project 19 45356384 45409498 - MGP_CASTEiJ_P0051859 Arl3 protein_coding protein_coding MGP_CASTEiJ_T0100838.1 MGP_CASTEiJ_G0037751.1 mouse_genomes_project 19 33329482 33329614 + Gm24006 snoRNA snoRNA MGP_CASTEiJ_T0050328.1 MGP_CASTEiJ_G0023894.1 mouse_genomes_project 19 1952639 1958902 + MGP_CASTEiJ_P0050328 Rin1 protein_coding protein_coding MGP_CASTEiJ_T0050329.1 MGP_CASTEiJ_G0023894.1 mouse_genomes_project 19 1952690 1958911 + MGP_CASTEiJ_P0050329 Rin1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006928.1 MGP_CASTEiJ_G0005701.1 mouse_genomes_project 19 56886319 56930239 - B230217O12Rik lincRNA lincRNA MGP_CASTEiJ_T0003748.1 MGP_CASTEiJ_G0003362.1 mouse_genomes_project 19 43471790 43479218 - 1700039E22Rik antisense antisense MGP_CASTEiJ_T0051976.1 MGP_CASTEiJ_G0024450.1 mouse_genomes_project 19 54481087 54513424 - MGP_CASTEiJ_P0051976 Gpam protein_coding protein_coding MGP_CASTEiJ_T0051977.1 MGP_CASTEiJ_G0024450.1 mouse_genomes_project 19 54481990 54513322 - MGP_CASTEiJ_P0051977 Gpam protein_coding unknown_likely_coding MGP_CASTEiJ_T0050330.1 MGP_CASTEiJ_G0023895.1 mouse_genomes_project 19 1969918 1972478 + MGP_CASTEiJ_P0050330 Cd248 protein_coding protein_coding MGP_CASTEiJ_T0052023.1 MGP_CASTEiJ_G0024459.1 mouse_genomes_project 19 55897442 55937344 + MGP_CASTEiJ_P0052023 Casp7 protein_coding protein_coding MGP_CASTEiJ_T0006872.1 MGP_CASTEiJ_G0005664.1 mouse_genomes_project 19 1004896 1009612 + Gm17552 lincRNA lincRNA MGP_CASTEiJ_T0006891.1 MGP_CASTEiJ_G0005676.1 mouse_genomes_project 19 21541886 21543556 + 1700021P04Rik lincRNA lincRNA MGP_CASTEiJ_T0010008.1 MGP_CASTEiJ_G0008196.1 mouse_genomes_project 19 3265831 3265920 + Mir192 miRNA miRNA MGP_CASTEiJ_T0051074.1 MGP_CASTEiJ_G0024125.1 mouse_genomes_project 19 9646135 9647136 + MGP_CASTEiJ_P0051074 Olfr1445 protein_coding protein_coding MGP_CASTEiJ_T0051748.1 MGP_CASTEiJ_G0024378.1 mouse_genomes_project 19 43689446 43693717 - Pdzd7 protein_coding processed_transcript MGP_CASTEiJ_T0051749.1 MGP_CASTEiJ_G0024378.1 mouse_genomes_project 19 43689447 43711348 - MGP_CASTEiJ_P0051749 Pdzd7 protein_coding protein_coding MGP_CASTEiJ_T0051750.1 MGP_CASTEiJ_G0024378.1 mouse_genomes_project 19 43689447 43712192 - MGP_CASTEiJ_P0051750 Pdzd7 protein_coding protein_coding MGP_CASTEiJ_T0050633.1 MGP_CASTEiJ_G0023970.1 mouse_genomes_project 19 3428769 3544138 + MGP_CASTEiJ_P0050633 Nrxn2 protein_coding protein_coding MGP_CASTEiJ_T0050634.1 MGP_CASTEiJ_G0023970.1 mouse_genomes_project 19 3428776 3478569 + Nrxn2 protein_coding retained_intron MGP_CASTEiJ_T0050635.1 MGP_CASTEiJ_G0023970.1 mouse_genomes_project 19 3428776 3544137 + MGP_CASTEiJ_P0050635 Nrxn2 protein_coding protein_coding MGP_CASTEiJ_T0050636.1 MGP_CASTEiJ_G0023970.1 mouse_genomes_project 19 3428803 3543185 + MGP_CASTEiJ_P0050636 Nrxn2 protein_coding protein_coding MGP_CASTEiJ_T0050637.1 MGP_CASTEiJ_G0023970.1 mouse_genomes_project 19 3437997 3544138 + MGP_CASTEiJ_P0050637 Nrxn2 protein_coding protein_coding MGP_CASTEiJ_T0050638.1 MGP_CASTEiJ_G0023970.1 mouse_genomes_project 19 3438049 3543233 + MGP_CASTEiJ_P0050638 Nrxn2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050639.1 MGP_CASTEiJ_G0023970.1 mouse_genomes_project 19 3438706 3484203 + MGP_CASTEiJ_P0050639 Nrxn2 protein_coding protein_coding MGP_CASTEiJ_T0050640.1 MGP_CASTEiJ_G0023970.1 mouse_genomes_project 19 3438827 3485162 + MGP_CASTEiJ_P0050640 Nrxn2 protein_coding protein_coding MGP_CASTEiJ_T0050641.1 MGP_CASTEiJ_G0023970.1 mouse_genomes_project 19 3457270 3485176 + Nrxn2 protein_coding processed_transcript MGP_CASTEiJ_T0050642.1 MGP_CASTEiJ_G0023970.1 mouse_genomes_project 19 3458108 3485274 + Nrxn2 protein_coding processed_transcript MGP_CASTEiJ_T0050643.1 MGP_CASTEiJ_G0023970.1 mouse_genomes_project 19 3466270 3494573 + Nrxn2 protein_coding retained_intron MGP_CASTEiJ_T0050644.1 MGP_CASTEiJ_G0023970.1 mouse_genomes_project 19 3484931 3494572 + Nrxn2 protein_coding retained_intron MGP_CASTEiJ_T0050645.1 MGP_CASTEiJ_G0023970.1 mouse_genomes_project 19 3509062 3520692 + Nrxn2 protein_coding processed_transcript MGP_CASTEiJ_T0050646.1 MGP_CASTEiJ_G0023970.1 mouse_genomes_project 19 3509219 3544138 + MGP_CASTEiJ_P0050646 Nrxn2 protein_coding protein_coding MGP_CASTEiJ_T0050647.1 MGP_CASTEiJ_G0023970.1 mouse_genomes_project 19 3509226 3555090 + MGP_CASTEiJ_P0050647 Nrxn2 protein_coding protein_coding MGP_CASTEiJ_T0050648.1 MGP_CASTEiJ_G0023970.1 mouse_genomes_project 19 3528068 3543203 + Nrxn2 protein_coding processed_transcript MGP_CASTEiJ_T0050453.1 MGP_CASTEiJ_G0023938.1 mouse_genomes_project 19 2849340 2865653 - MGP_CASTEiJ_P0050453 Dpf2 protein_coding protein_coding MGP_CASTEiJ_T0050454.1 MGP_CASTEiJ_G0023938.1 mouse_genomes_project 19 2850801 2855378 - Dpf2 protein_coding retained_intron MGP_CASTEiJ_T0050455.1 MGP_CASTEiJ_G0023938.1 mouse_genomes_project 19 2850813 2865554 - MGP_CASTEiJ_P0050455 Dpf2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050456.1 MGP_CASTEiJ_G0023938.1 mouse_genomes_project 19 2851371 2854486 - Dpf2 protein_coding retained_intron MGP_CASTEiJ_T0050457.1 MGP_CASTEiJ_G0023938.1 mouse_genomes_project 19 2856192 2865559 - Dpf2 protein_coding retained_intron MGP_CASTEiJ_T0050458.1 MGP_CASTEiJ_G0023938.1 mouse_genomes_project 19 2857171 2865551 - Dpf2 protein_coding retained_intron MGP_CASTEiJ_T0050459.1 MGP_CASTEiJ_G0023938.1 mouse_genomes_project 19 2857583 2865792 - Dpf2 protein_coding processed_transcript MGP_CASTEiJ_T0050460.1 MGP_CASTEiJ_G0023938.1 mouse_genomes_project 19 2864607 2865589 - Dpf2 protein_coding processed_transcript MGP_CASTEiJ_T0003737.1 MGP_CASTEiJ_G0003355.1 mouse_genomes_project 19 19792155 19801701 - Gm27151 antisense antisense MGP_CASTEiJ_T0003738.1 MGP_CASTEiJ_G0003355.1 mouse_genomes_project 19 19792185 19802424 - Gm27151 antisense antisense MGP_CASTEiJ_T0050840.1 MGP_CASTEiJ_G0024026.1 mouse_genomes_project 19 5674868 5676868 + MGP_CASTEiJ_P0050840 1810009A15Rik protein_coding protein_coding MGP_CASTEiJ_T0050842.1 MGP_CASTEiJ_G0024026.1 mouse_genomes_project 19 5674914 5676733 + 1810009A15Rik protein_coding retained_intron MGP_CASTEiJ_T0050843.1 MGP_CASTEiJ_G0024026.1 mouse_genomes_project 19 5674930 5676533 + MGP_CASTEiJ_P0050843 1810009A15Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050845.1 MGP_CASTEiJ_G0024026.1 mouse_genomes_project 19 5674944 5676452 + 1810009A15Rik protein_coding retained_intron MGP_CASTEiJ_T0050846.1 MGP_CASTEiJ_G0024026.1 mouse_genomes_project 19 5674954 5676728 + 1810009A15Rik protein_coding retained_intron MGP_CASTEiJ_T0006883.1 MGP_CASTEiJ_G0005669.1 mouse_genomes_project 19 7024328 7026936 - Gm26859 lincRNA lincRNA MGP_CASTEiJ_T0003739.1 MGP_CASTEiJ_G0003356.1 mouse_genomes_project 19 21923190 21937524 + Pip5k1bos antisense antisense MGP_CASTEiJ_T0051199.1 MGP_CASTEiJ_G0024196.1 mouse_genomes_project 19 21798724 21951970 - MGP_CASTEiJ_P0051199 Pip5k1b protein_coding unknown_likely_coding MGP_CASTEiJ_T0051200.1 MGP_CASTEiJ_G0024196.1 mouse_genomes_project 19 21901564 22071271 - Pip5k1b protein_coding retained_intron MGP_CASTEiJ_T0051201.1 MGP_CASTEiJ_G0024196.1 mouse_genomes_project 19 21942555 22071222 - Pip5k1b protein_coding processed_transcript MGP_CASTEiJ_T0051516.1 MGP_CASTEiJ_G0024303.1 mouse_genomes_project 19 38347735 38378340 - MGP_CASTEiJ_P0051516 protein_coding protein_coding MGP_CASTEiJ_T0052094.1 MGP_CASTEiJ_G0024476.1 mouse_genomes_project 19 58432984 58453524 + MGP_CASTEiJ_P0052094 Pnliprp2 protein_coding protein_coding MGP_CASTEiJ_T0050350.1 MGP_CASTEiJ_G0023903.1 mouse_genomes_project 19 2219745 2233471 + MGP_CASTEiJ_P0050350 Gal3st3 protein_coding protein_coding MGP_CASTEiJ_T0102193.1 MGP_CASTEiJ_G0038918.1 mouse_genomes_project 19 6282768 6291510 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0050532.1 MGP_CASTEiJ_G0023958.1 mouse_genomes_project 19 3120639 3155897 + Batf2 protein_coding processed_transcript MGP_CASTEiJ_T0050533.1 MGP_CASTEiJ_G0023958.1 mouse_genomes_project 19 3145879 3155900 + MGP_CASTEiJ_P0050533 Batf2 protein_coding protein_coding MGP_CASTEiJ_T0050534.1 MGP_CASTEiJ_G0023958.1 mouse_genomes_project 19 3145894 3154791 + Batf2 protein_coding retained_intron MGP_CASTEiJ_T0050535.1 MGP_CASTEiJ_G0023958.1 mouse_genomes_project 19 3145894 3155192 + Batf2 protein_coding retained_intron MGP_CASTEiJ_T0050536.1 MGP_CASTEiJ_G0023958.1 mouse_genomes_project 19 3145900 3155182 + Batf2 protein_coding processed_transcript MGP_CASTEiJ_T0050537.1 MGP_CASTEiJ_G0023958.1 mouse_genomes_project 19 3145929 3154791 + Batf2 protein_coding retained_intron MGP_CASTEiJ_T0051202.1 MGP_CASTEiJ_G0024197.1 mouse_genomes_project 19 21988424 21989279 - MGP_CASTEiJ_P0051202 Fam122a protein_coding protein_coding MGP_CASTEiJ_T0098566.1 MGP_CASTEiJ_G0035497.1 mouse_genomes_project 19 49904095 49904132 + Gm25659 rRNA rRNA MGP_CASTEiJ_T0010004.1 MGP_CASTEiJ_G0008192.1 mouse_genomes_project 19 2115984 2116087 - Gm27468 miRNA miRNA MGP_CASTEiJ_T0050740.1 MGP_CASTEiJ_G0024000.1 mouse_genomes_project 19 4454875 4502539 + MGP_CASTEiJ_P0050740 Atl3 protein_coding protein_coding MGP_CASTEiJ_T0050741.1 MGP_CASTEiJ_G0024000.1 mouse_genomes_project 19 4455273 4502539 + MGP_CASTEiJ_P0050741 Atl3 protein_coding protein_coding MGP_CASTEiJ_T0051612.1 MGP_CASTEiJ_G0024331.1 mouse_genomes_project 19 40478066 40487327 + MGP_CASTEiJ_P0051612 Ankrd2 protein_coding protein_coding MGP_CASTEiJ_T0051249.1 MGP_CASTEiJ_G0024210.1 mouse_genomes_project 19 25015901 25031696 + MGP_CASTEiJ_P0051249 Kcnv2 protein_coding protein_coding MGP_CASTEiJ_T0003735.1 MGP_CASTEiJ_G0003354.1 mouse_genomes_project 19 9470724 9486374 - Gm15962 antisense antisense MGP_CASTEiJ_T0003736.1 MGP_CASTEiJ_G0003354.1 mouse_genomes_project 19 9480985 9486418 - Gm15962 antisense antisense MGP_CASTEiJ_T0013000.1 MGP_CASTEiJ_G0011163.1 mouse_genomes_project 19 61073252 61073503 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010036.1 MGP_CASTEiJ_G0008224.1 mouse_genomes_project 19 43447568 43447692 + Mir6405 miRNA miRNA MGP_CASTEiJ_T0050103.1 MGP_CASTEiJ_G0023834.1 mouse_genomes_project 19 491569 501073 + MGP_CASTEiJ_P0050103 1810055G02Rik protein_coding protein_coding MGP_CASTEiJ_T0003724.1 MGP_CASTEiJ_G0003347.1 mouse_genomes_project 19 2795827 2801770 + Frmd8os antisense antisense MGP_CASTEiJ_T0003725.1 MGP_CASTEiJ_G0003347.1 mouse_genomes_project 19 2798670 2801754 + Frmd8os antisense antisense MGP_CASTEiJ_T0051036.1 MGP_CASTEiJ_G0024101.1 mouse_genomes_project 19 8614912 8615965 + MGP_CASTEiJ_P0051036 Olfr1420 protein_coding protein_coding MGP_CASTEiJ_T0050315.1 MGP_CASTEiJ_G0023887.1 mouse_genomes_project 19 1805057 1825955 - MGP_CASTEiJ_P0050315 Dpp3 protein_coding protein_coding MGP_CASTEiJ_T0051098.1 MGP_CASTEiJ_G0024149.1 mouse_genomes_project 19 10652027 10653094 + MGP_CASTEiJ_P0051098 protein_coding protein_coding MGP_CASTEiJ_T0052120.1 MGP_CASTEiJ_G0024491.1 mouse_genomes_project 19 60532190 60563787 - MGP_CASTEiJ_P0052120 Eif3a protein_coding protein_coding MGP_CASTEiJ_T0016951.1 MGP_CASTEiJ_G0014694.1 mouse_genomes_project 19 6833280 6837259 + Gm10143 processed_transcript processed_transcript MGP_CASTEiJ_T0016952.1 MGP_CASTEiJ_G0014694.1 mouse_genomes_project 19 6834061 6837257 + Gm10143 processed_transcript processed_transcript MGP_CASTEiJ_T0098560.1 MGP_CASTEiJ_G0035491.1 mouse_genomes_project 19 4198285 4198406 + Gm23997 rRNA rRNA MGP_CASTEiJ_T0051499.1 MGP_CASTEiJ_G0024295.1 mouse_genomes_project 19 37253192 37349822 + MGP_CASTEiJ_P0051499 Tbc1d12 protein_coding protein_coding MGP_CASTEiJ_T0051298.1 MGP_CASTEiJ_G0024224.1 mouse_genomes_project 19 27183985 27220273 + MGP_CASTEiJ_P0051298 Cd274 protein_coding protein_coding MGP_CASTEiJ_T0051858.1 MGP_CASTEiJ_G0024406.1 mouse_genomes_project 19 45323254 45338024 + MGP_CASTEiJ_P0051858 Trim8 protein_coding protein_coding MGP_CASTEiJ_T0010023.1 MGP_CASTEiJ_G0008211.1 mouse_genomes_project 19 20556599 20556720 + Mir1192 miRNA miRNA MGP_CASTEiJ_T0006924.1 MGP_CASTEiJ_G0005698.1 mouse_genomes_project 19 52717809 52745908 - Mirt1 lincRNA lincRNA MGP_CASTEiJ_T0006925.1 MGP_CASTEiJ_G0005698.1 mouse_genomes_project 19 52732914 52735143 - Mirt1 lincRNA lincRNA MGP_CASTEiJ_T0050508.1 MGP_CASTEiJ_G0023952.1 mouse_genomes_project 19 3055737 3059916 - MGP_CASTEiJ_P0050508 Zfpl1 protein_coding protein_coding MGP_CASTEiJ_T0050509.1 MGP_CASTEiJ_G0023952.1 mouse_genomes_project 19 3055740 3057803 - Zfpl1 protein_coding retained_intron MGP_CASTEiJ_T0050510.1 MGP_CASTEiJ_G0023952.1 mouse_genomes_project 19 3056143 3059888 - MGP_CASTEiJ_P0050510 Zfpl1 protein_coding protein_coding MGP_CASTEiJ_T0050511.1 MGP_CASTEiJ_G0023952.1 mouse_genomes_project 19 3056836 3059665 - MGP_CASTEiJ_P0050511 Zfpl1 protein_coding protein_coding MGP_CASTEiJ_T0050512.1 MGP_CASTEiJ_G0023952.1 mouse_genomes_project 19 3057166 3059867 - Zfpl1 protein_coding retained_intron MGP_CASTEiJ_T0050513.1 MGP_CASTEiJ_G0023952.1 mouse_genomes_project 19 3057186 3059877 - MGP_CASTEiJ_P0050513 Zfpl1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050514.1 MGP_CASTEiJ_G0023952.1 mouse_genomes_project 19 3057227 3059279 - Zfpl1 protein_coding retained_intron MGP_CASTEiJ_T0050515.1 MGP_CASTEiJ_G0023952.1 mouse_genomes_project 19 3057232 3059917 - MGP_CASTEiJ_P0050515 Zfpl1 protein_coding protein_coding MGP_CASTEiJ_T0050516.1 MGP_CASTEiJ_G0023952.1 mouse_genomes_project 19 3057577 3059900 - MGP_CASTEiJ_P0050516 Zfpl1 protein_coding protein_coding MGP_CASTEiJ_T0051861.1 MGP_CASTEiJ_G0024409.1 mouse_genomes_project 19 45441626 45509005 + MGP_CASTEiJ_P0051861 Wbp1l protein_coding protein_coding MGP_CASTEiJ_T0051862.1 MGP_CASTEiJ_G0024409.1 mouse_genomes_project 19 45441655 45509001 + MGP_CASTEiJ_P0051862 Wbp1l protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051863.1 MGP_CASTEiJ_G0024409.1 mouse_genomes_project 19 45441656 45508998 + MGP_CASTEiJ_P0051863 Wbp1l protein_coding protein_coding MGP_CASTEiJ_T0051864.1 MGP_CASTEiJ_G0024409.1 mouse_genomes_project 19 45441666 45496400 + Wbp1l protein_coding processed_transcript MGP_CASTEiJ_T0051865.1 MGP_CASTEiJ_G0024409.1 mouse_genomes_project 19 45468192 45504231 + Wbp1l protein_coding processed_transcript MGP_CASTEiJ_T0051866.1 MGP_CASTEiJ_G0024409.1 mouse_genomes_project 19 45468192 45509001 + MGP_CASTEiJ_P0051866 Wbp1l protein_coding protein_coding MGP_CASTEiJ_T0006887.1 MGP_CASTEiJ_G0005673.1 mouse_genomes_project 19 17663392 17680847 + 1500015L24Rik lincRNA lincRNA MGP_CASTEiJ_T0006888.1 MGP_CASTEiJ_G0005673.1 mouse_genomes_project 19 17680424 17680839 + 1500015L24Rik lincRNA lincRNA MGP_CASTEiJ_T0016908.1 MGP_CASTEiJ_G0014687.1 mouse_genomes_project 19 956015 962291 + Tmem134 processed_transcript processed_transcript MGP_CASTEiJ_T0016909.1 MGP_CASTEiJ_G0014687.1 mouse_genomes_project 19 956040 961451 + Tmem134 processed_transcript processed_transcript MGP_CASTEiJ_T0016910.1 MGP_CASTEiJ_G0014687.1 mouse_genomes_project 19 956040 961734 + Tmem134 processed_transcript processed_transcript MGP_CASTEiJ_T0016911.1 MGP_CASTEiJ_G0014687.1 mouse_genomes_project 19 956040 961733 + Tmem134 processed_transcript retained_intron MGP_CASTEiJ_T0016912.1 MGP_CASTEiJ_G0014687.1 mouse_genomes_project 19 956040 961734 + Tmem134 processed_transcript processed_transcript MGP_CASTEiJ_T0016913.1 MGP_CASTEiJ_G0014687.1 mouse_genomes_project 19 956040 961734 + Tmem134 processed_transcript processed_transcript MGP_CASTEiJ_T0016914.1 MGP_CASTEiJ_G0014687.1 mouse_genomes_project 19 956041 962291 + Tmem134 processed_transcript retained_intron MGP_CASTEiJ_T0016915.1 MGP_CASTEiJ_G0014687.1 mouse_genomes_project 19 956041 962313 + Tmem134 processed_transcript processed_transcript MGP_CASTEiJ_T0016916.1 MGP_CASTEiJ_G0014687.1 mouse_genomes_project 19 956041 962311 + Tmem134 processed_transcript processed_transcript MGP_CASTEiJ_T0016917.1 MGP_CASTEiJ_G0014687.1 mouse_genomes_project 19 956056 961734 + Tmem134 processed_transcript processed_transcript MGP_CASTEiJ_T0016918.1 MGP_CASTEiJ_G0014687.1 mouse_genomes_project 19 956060 961742 + Tmem134 processed_transcript processed_transcript MGP_CASTEiJ_T0016919.1 MGP_CASTEiJ_G0014687.1 mouse_genomes_project 19 956068 961737 + Tmem134 processed_transcript processed_transcript MGP_CASTEiJ_T0016920.1 MGP_CASTEiJ_G0014687.1 mouse_genomes_project 19 956070 961734 + Tmem134 processed_transcript processed_transcript MGP_CASTEiJ_T0016921.1 MGP_CASTEiJ_G0014687.1 mouse_genomes_project 19 956070 957820 + Tmem134 processed_transcript processed_transcript MGP_CASTEiJ_T0016922.1 MGP_CASTEiJ_G0014687.1 mouse_genomes_project 19 956109 961739 + Tmem134 processed_transcript processed_transcript MGP_CASTEiJ_T0016923.1 MGP_CASTEiJ_G0014687.1 mouse_genomes_project 19 957652 961254 + Tmem134 processed_transcript processed_transcript MGP_CASTEiJ_T0051520.1 MGP_CASTEiJ_G0024305.1 mouse_genomes_project 19 38469168 38504285 - MGP_CASTEiJ_P0051520 Cyp2c70 protein_coding protein_coding MGP_CASTEiJ_T0051521.1 MGP_CASTEiJ_G0024305.1 mouse_genomes_project 19 38481713 38504285 - MGP_CASTEiJ_P0051521 Cyp2c70 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051522.1 MGP_CASTEiJ_G0024305.1 mouse_genomes_project 19 38482789 38504285 - MGP_CASTEiJ_P0051522 Cyp2c70 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051523.1 MGP_CASTEiJ_G0024305.1 mouse_genomes_project 19 38497702 38504332 - Cyp2c70 protein_coding retained_intron MGP_CASTEiJ_T0051416.1 MGP_CASTEiJ_G0024270.1 mouse_genomes_project 19 34263282 34271037 - MGP_CASTEiJ_P0051416 Ankrd1 protein_coding protein_coding MGP_CASTEiJ_T0052018.1 MGP_CASTEiJ_G0024458.1 mouse_genomes_project 19 55810398 55888381 - MGP_CASTEiJ_P0052018 Nrap protein_coding protein_coding MGP_CASTEiJ_T0052019.1 MGP_CASTEiJ_G0024458.1 mouse_genomes_project 19 55810464 55888405 - MGP_CASTEiJ_P0052019 Nrap protein_coding protein_coding MGP_CASTEiJ_T0052020.1 MGP_CASTEiJ_G0024458.1 mouse_genomes_project 19 55810553 55876031 - MGP_CASTEiJ_P0052020 Nrap protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052021.1 MGP_CASTEiJ_G0024458.1 mouse_genomes_project 19 55810556 55888247 - MGP_CASTEiJ_P0052021 Nrap protein_coding protein_coding MGP_CASTEiJ_T0052022.1 MGP_CASTEiJ_G0024458.1 mouse_genomes_project 19 55810556 55888247 - MGP_CASTEiJ_P0052022 Nrap protein_coding protein_coding MGP_CASTEiJ_T0010002.1 MGP_CASTEiJ_G0008190.1 mouse_genomes_project 19 1105195 1105256 - Mir6985 miRNA miRNA MGP_CASTEiJ_T0100847.1 MGP_CASTEiJ_G0037760.1 mouse_genomes_project 19 60547309 60547428 - Gm26158 snoRNA snoRNA MGP_CASTEiJ_T0016928.1 MGP_CASTEiJ_G0014689.1 mouse_genomes_project 19 2744315 2745304 + Gm20417 processed_transcript processed_transcript MGP_CASTEiJ_T0003720.1 MGP_CASTEiJ_G0003345.1 mouse_genomes_project 19 2337206 2347993 + 4930481A15Rik antisense antisense MGP_CASTEiJ_T0003721.1 MGP_CASTEiJ_G0003345.1 mouse_genomes_project 19 2337206 2348096 + 4930481A15Rik antisense antisense MGP_CASTEiJ_T0003722.1 MGP_CASTEiJ_G0003345.1 mouse_genomes_project 19 2337206 2348000 + 4930481A15Rik antisense antisense MGP_CASTEiJ_T0006932.1 MGP_CASTEiJ_G0005705.1 mouse_genomes_project 19 59879370 59897333 + E330013P04Rik lincRNA lincRNA MGP_CASTEiJ_T0006933.1 MGP_CASTEiJ_G0005705.1 mouse_genomes_project 19 59879399 59887778 + E330013P04Rik lincRNA lincRNA MGP_CASTEiJ_T0006934.1 MGP_CASTEiJ_G0005705.1 mouse_genomes_project 19 59885982 59892033 + E330013P04Rik lincRNA lincRNA MGP_CASTEiJ_T0016930.1 MGP_CASTEiJ_G0014691.1 mouse_genomes_project 19 3419431 3428644 - Gm14965 processed_transcript antisense MGP_CASTEiJ_T0016931.1 MGP_CASTEiJ_G0014691.1 mouse_genomes_project 19 3426846 3428644 - Gm14965 processed_transcript retained_intron MGP_CASTEiJ_T0051196.1 MGP_CASTEiJ_G0024195.1 mouse_genomes_project 19 21761101 21781457 - MGP_CASTEiJ_P0051196 Fxn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051197.1 MGP_CASTEiJ_G0024195.1 mouse_genomes_project 19 21761101 21781494 - MGP_CASTEiJ_P0051197 Fxn protein_coding protein_coding MGP_CASTEiJ_T0051198.1 MGP_CASTEiJ_G0024195.1 mouse_genomes_project 19 21761391 21779084 - Fxn protein_coding retained_intron MGP_CASTEiJ_T0052107.1 MGP_CASTEiJ_G0024484.1 mouse_genomes_project 19 59004897 59055172 - MGP_CASTEiJ_P0052107 Pdzd8 protein_coding protein_coding MGP_CASTEiJ_T0099604.1 MGP_CASTEiJ_G0036517.1 mouse_genomes_project 19 32872316 32872477 + Gm22082 snRNA snRNA MGP_CASTEiJ_T0011150.1 MGP_CASTEiJ_G0009338.1 mouse_genomes_project 19 31021952 31022311 - Gm22482 misc_RNA misc_RNA MGP_CASTEiJ_T0052114.1 MGP_CASTEiJ_G0024487.1 mouse_genomes_project 19 59934351 59963464 - MGP_CASTEiJ_P0052114 Fam204a protein_coding protein_coding MGP_CASTEiJ_T0051082.1 MGP_CASTEiJ_G0024133.1 mouse_genomes_project 19 9850226 9851180 - MGP_CASTEiJ_P0051082 Olfr1457 protein_coding protein_coding MGP_CASTEiJ_T0051210.1 MGP_CASTEiJ_G0024202.1 mouse_genomes_project 19 22535378 22754533 + MGP_CASTEiJ_P0051210 Dock8 protein_coding protein_coding MGP_CASTEiJ_T0050099.1 MGP_CASTEiJ_G0023833.1 mouse_genomes_project 19 356169 467367 - MGP_CASTEiJ_P0050099 Lrp5 protein_coding protein_coding MGP_CASTEiJ_T0050100.1 MGP_CASTEiJ_G0023833.1 mouse_genomes_project 19 356172 467372 - MGP_CASTEiJ_P0050100 Lrp5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050101.1 MGP_CASTEiJ_G0023833.1 mouse_genomes_project 19 356177 392390 - MGP_CASTEiJ_P0050101 Lrp5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050102.1 MGP_CASTEiJ_G0023833.1 mouse_genomes_project 19 398229 467375 - MGP_CASTEiJ_P0050102 Lrp5 protein_coding protein_coding MGP_CASTEiJ_T0050179.1 MGP_CASTEiJ_G0023850.1 mouse_genomes_project 19 907133 911239 + MGP_CASTEiJ_P0050179 Cabp2 protein_coding protein_coding MGP_CASTEiJ_T0050180.1 MGP_CASTEiJ_G0023850.1 mouse_genomes_project 19 908050 912904 + MGP_CASTEiJ_P0050180 Cabp2 protein_coding protein_coding MGP_CASTEiJ_T0050181.1 MGP_CASTEiJ_G0023850.1 mouse_genomes_project 19 909052 912908 + MGP_CASTEiJ_P0050181 Cabp2 protein_coding protein_coding MGP_CASTEiJ_T0050182.1 MGP_CASTEiJ_G0023850.1 mouse_genomes_project 19 909081 912908 + MGP_CASTEiJ_P0050182 Cabp2 protein_coding protein_coding MGP_CASTEiJ_T0050183.1 MGP_CASTEiJ_G0023850.1 mouse_genomes_project 19 912036 912905 + Cabp2 protein_coding processed_transcript MGP_CASTEiJ_T0003755.1 MGP_CASTEiJ_G0003369.1 mouse_genomes_project 19 57835219 57868544 + Gm16277 antisense antisense MGP_CASTEiJ_T0006895.1 MGP_CASTEiJ_G0005678.1 mouse_genomes_project 19 25827491 25828396 + Gm28228 lincRNA lincRNA MGP_CASTEiJ_T0051490.1 MGP_CASTEiJ_G0024292.1 mouse_genomes_project 19 36778778 36789662 + MGP_CASTEiJ_P0051490 Slc35g1 protein_coding protein_coding MGP_CASTEiJ_T0051572.1 MGP_CASTEiJ_G0024320.1 mouse_genomes_project 19 39985288 39989455 + MGP_CASTEiJ_P0051572 Gm340 protein_coding protein_coding MGP_CASTEiJ_T0050230.1 MGP_CASTEiJ_G0023862.1 mouse_genomes_project 19 1033748 1040149 - MGP_CASTEiJ_P0050230 Rad9a protein_coding protein_coding MGP_CASTEiJ_T0050545.1 MGP_CASTEiJ_G0023962.1 mouse_genomes_project 19 3242159 3263314 + MGP_CASTEiJ_P0050545 Atg2a protein_coding protein_coding MGP_CASTEiJ_T0050546.1 MGP_CASTEiJ_G0023962.1 mouse_genomes_project 19 3246041 3263274 + MGP_CASTEiJ_P0050546 Atg2a protein_coding protein_coding MGP_CASTEiJ_T0050547.1 MGP_CASTEiJ_G0023962.1 mouse_genomes_project 19 3252498 3253306 + Atg2a protein_coding retained_intron MGP_CASTEiJ_T0050548.1 MGP_CASTEiJ_G0023962.1 mouse_genomes_project 19 3257378 3260657 + Atg2a protein_coding retained_intron MGP_CASTEiJ_T0050549.1 MGP_CASTEiJ_G0023962.1 mouse_genomes_project 19 3259380 3261127 + Atg2a protein_coding retained_intron MGP_CASTEiJ_T0016953.1 MGP_CASTEiJ_G0014695.1 mouse_genomes_project 19 7386126 7433716 + A430093F15Rik processed_transcript lincRNA MGP_CASTEiJ_T0016954.1 MGP_CASTEiJ_G0014695.1 mouse_genomes_project 19 7386130 7433707 + A430093F15Rik processed_transcript lincRNA MGP_CASTEiJ_T0016955.1 MGP_CASTEiJ_G0014695.1 mouse_genomes_project 19 7386139 7433350 + A430093F15Rik processed_transcript lincRNA MGP_CASTEiJ_T0016956.1 MGP_CASTEiJ_G0014695.1 mouse_genomes_project 19 7394079 7403920 + A430093F15Rik processed_transcript retained_intron MGP_CASTEiJ_T0016957.1 MGP_CASTEiJ_G0014695.1 mouse_genomes_project 19 7429584 7433712 + A430093F15Rik processed_transcript lincRNA MGP_CASTEiJ_T0016958.1 MGP_CASTEiJ_G0014695.1 mouse_genomes_project 19 7433024 7433709 + A430093F15Rik processed_transcript retained_intron MGP_CASTEiJ_T0050932.1 MGP_CASTEiJ_G0024065.1 mouse_genomes_project 19 7495033 7501464 + Slc15a3 protein_coding processed_transcript MGP_CASTEiJ_T0050933.1 MGP_CASTEiJ_G0024065.1 mouse_genomes_project 19 7497913 7516979 + MGP_CASTEiJ_P0050933 Slc15a3 protein_coding protein_coding MGP_CASTEiJ_T0050934.1 MGP_CASTEiJ_G0024065.1 mouse_genomes_project 19 7497919 7501588 + Slc15a3 protein_coding processed_transcript MGP_CASTEiJ_T0050935.1 MGP_CASTEiJ_G0024065.1 mouse_genomes_project 19 7501006 7518426 + Slc15a3 protein_coding retained_intron MGP_CASTEiJ_T0051440.1 MGP_CASTEiJ_G0024277.1 mouse_genomes_project 19 35275570 35478483 - MGP_CASTEiJ_P0051440 Cpeb3 protein_coding protein_coding MGP_CASTEiJ_T0051441.1 MGP_CASTEiJ_G0024277.1 mouse_genomes_project 19 35275576 35443871 - MGP_CASTEiJ_P0051441 Cpeb3 protein_coding protein_coding MGP_CASTEiJ_T0051442.1 MGP_CASTEiJ_G0024277.1 mouse_genomes_project 19 35276185 35478483 - MGP_CASTEiJ_P0051442 Cpeb3 protein_coding protein_coding MGP_CASTEiJ_T0051443.1 MGP_CASTEiJ_G0024277.1 mouse_genomes_project 19 35276185 35445839 - MGP_CASTEiJ_P0051443 Cpeb3 protein_coding protein_coding MGP_CASTEiJ_T0051444.1 MGP_CASTEiJ_G0024277.1 mouse_genomes_project 19 35277273 35478494 - MGP_CASTEiJ_P0051444 Cpeb3 protein_coding protein_coding MGP_CASTEiJ_T0051445.1 MGP_CASTEiJ_G0024277.1 mouse_genomes_project 19 35278242 35478314 - MGP_CASTEiJ_P0051445 Cpeb3 protein_coding protein_coding MGP_CASTEiJ_T0051446.1 MGP_CASTEiJ_G0024277.1 mouse_genomes_project 19 35278946 35468307 - MGP_CASTEiJ_P0051446 Cpeb3 protein_coding protein_coding MGP_CASTEiJ_T0051447.1 MGP_CASTEiJ_G0024277.1 mouse_genomes_project 19 35309235 35478529 - MGP_CASTEiJ_P0051447 Cpeb3 protein_coding protein_coding MGP_CASTEiJ_T0051448.1 MGP_CASTEiJ_G0024277.1 mouse_genomes_project 19 35444212 35447783 - MGP_CASTEiJ_P0051448 Cpeb3 protein_coding protein_coding MGP_CASTEiJ_T0051449.1 MGP_CASTEiJ_G0024277.1 mouse_genomes_project 19 35444368 35445832 - MGP_CASTEiJ_P0051449 Cpeb3 protein_coding protein_coding MGP_CASTEiJ_T0051450.1 MGP_CASTEiJ_G0024277.1 mouse_genomes_project 19 35444398 35479659 - MGP_CASTEiJ_P0051450 Cpeb3 protein_coding protein_coding MGP_CASTEiJ_T0051451.1 MGP_CASTEiJ_G0024277.1 mouse_genomes_project 19 35444463 35444992 - MGP_CASTEiJ_P0051451 Cpeb3 protein_coding protein_coding MGP_CASTEiJ_T0050815.1 MGP_CASTEiJ_G0024016.1 mouse_genomes_project 19 5566599 5572898 - MGP_CASTEiJ_P0050815 Polr2g protein_coding protein_coding MGP_CASTEiJ_T0050872.1 MGP_CASTEiJ_G0024036.1 mouse_genomes_project 19 5892495 5898730 - MGP_CASTEiJ_P0050872 Scgb1a1 protein_coding protein_coding MGP_CASTEiJ_T0052115.1 MGP_CASTEiJ_G0024488.1 mouse_genomes_project 19 60217248 60218814 - MGP_CASTEiJ_P0052115 Prlhr protein_coding protein_coding MGP_CASTEiJ_T0050376.1 MGP_CASTEiJ_G0023915.1 mouse_genomes_project 19 2394800 2398071 - MGP_CASTEiJ_P0050376 Ctsw protein_coding protein_coding MGP_CASTEiJ_T0051557.1 MGP_CASTEiJ_G0024311.1 mouse_genomes_project 19 39179838 39198650 + MGP_CASTEiJ_P0051557 Ccnj protein_coding protein_coding MGP_CASTEiJ_T0051558.1 MGP_CASTEiJ_G0024311.1 mouse_genomes_project 19 39179838 39198650 + MGP_CASTEiJ_P0051558 Ccnj protein_coding protein_coding MGP_CASTEiJ_T0051559.1 MGP_CASTEiJ_G0024311.1 mouse_genomes_project 19 39179867 39198083 + MGP_CASTEiJ_P0051559 Ccnj protein_coding protein_coding MGP_CASTEiJ_T0050960.1 MGP_CASTEiJ_G0024072.1 mouse_genomes_project 19 7627837 7640696 - MGP_CASTEiJ_P0050960 Ms4a10 protein_coding protein_coding MGP_CASTEiJ_T0050961.1 MGP_CASTEiJ_G0024072.1 mouse_genomes_project 19 7627841 7640671 - MGP_CASTEiJ_P0050961 Ms4a10 protein_coding protein_coding MGP_CASTEiJ_T0050962.1 MGP_CASTEiJ_G0024072.1 mouse_genomes_project 19 7627844 7631409 - MGP_CASTEiJ_P0050962 Ms4a10 protein_coding protein_coding MGP_CASTEiJ_T0051408.1 MGP_CASTEiJ_G0024267.1 mouse_genomes_project 19 33009507 33069691 + MGP_CASTEiJ_P0051408 Kif20b protein_coding unknown_likely_coding MGP_CASTEiJ_T0006915.1 MGP_CASTEiJ_G0005692.1 mouse_genomes_project 19 43997062 43998017 - Gm29593 lincRNA lincRNA MGP_CASTEiJ_T0050403.1 MGP_CASTEiJ_G0023919.1 mouse_genomes_project 19 2429516 2444237 - MGP_CASTEiJ_P0050403 Snx32 protein_coding protein_coding MGP_CASTEiJ_T0012975.1 MGP_CASTEiJ_G0011138.1 mouse_genomes_project 19 10896346 10897135 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0051727.1 MGP_CASTEiJ_G0024370.1 mouse_genomes_project 19 43168953 43175817 - MGP_CASTEiJ_P0051727 Ndufb8 protein_coding protein_coding MGP_CASTEiJ_T0051728.1 MGP_CASTEiJ_G0024370.1 mouse_genomes_project 19 43170630 43175831 - MGP_CASTEiJ_P0051728 Ndufb8 protein_coding protein_coding MGP_CASTEiJ_T0051729.1 MGP_CASTEiJ_G0024370.1 mouse_genomes_project 19 43170643 43175810 - MGP_CASTEiJ_P0051729 Ndufb8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051730.1 MGP_CASTEiJ_G0024370.1 mouse_genomes_project 19 43170645 43173276 - Ndufb8 protein_coding retained_intron MGP_CASTEiJ_T0051731.1 MGP_CASTEiJ_G0024370.1 mouse_genomes_project 19 43173017 43175377 - MGP_CASTEiJ_P0051731 Ndufb8 protein_coding protein_coding MGP_CASTEiJ_T0051732.1 MGP_CASTEiJ_G0024370.1 mouse_genomes_project 19 43173235 43175795 - MGP_CASTEiJ_P0051732 Ndufb8 protein_coding protein_coding MGP_CASTEiJ_T0051733.1 MGP_CASTEiJ_G0024370.1 mouse_genomes_project 19 43173670 43175796 - Ndufb8 protein_coding retained_intron MGP_CASTEiJ_T0051734.1 MGP_CASTEiJ_G0024370.1 mouse_genomes_project 19 43175091 43175817 - Ndufb8 protein_coding retained_intron MGP_CASTEiJ_T0051735.1 MGP_CASTEiJ_G0024370.1 mouse_genomes_project 19 43175105 43175814 - Ndufb8 protein_coding retained_intron MGP_CASTEiJ_T0050308.1 MGP_CASTEiJ_G0023885.1 mouse_genomes_project 19 1772214 1778990 + Zdhhc24 protein_coding processed_transcript MGP_CASTEiJ_T0050309.1 MGP_CASTEiJ_G0023885.1 mouse_genomes_project 19 1772218 1778990 + MGP_CASTEiJ_P0050309 Zdhhc24 protein_coding protein_coding MGP_CASTEiJ_T0050310.1 MGP_CASTEiJ_G0023885.1 mouse_genomes_project 19 1772236 1778988 + Zdhhc24 protein_coding processed_transcript MGP_CASTEiJ_T0050311.1 MGP_CASTEiJ_G0023885.1 mouse_genomes_project 19 1772250 1778989 + MGP_CASTEiJ_P0050311 Zdhhc24 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050312.1 MGP_CASTEiJ_G0023885.1 mouse_genomes_project 19 1772269 1777397 + MGP_CASTEiJ_P0050312 Zdhhc24 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050313.1 MGP_CASTEiJ_G0023885.1 mouse_genomes_project 19 1773311 1777380 + Zdhhc24 protein_coding processed_transcript MGP_CASTEiJ_T0006904.1 MGP_CASTEiJ_G0005683.1 mouse_genomes_project 19 33160205 33164232 - Gm5248 lincRNA lincRNA MGP_CASTEiJ_T0051911.1 MGP_CASTEiJ_G0024428.1 mouse_genomes_project 19 46569990 46619231 - MGP_CASTEiJ_P0051911 Col17a1 protein_coding protein_coding MGP_CASTEiJ_T0051912.1 MGP_CASTEiJ_G0024428.1 mouse_genomes_project 19 46569990 46619231 - MGP_CASTEiJ_P0051912 Col17a1 protein_coding protein_coding MGP_CASTEiJ_T0051913.1 MGP_CASTEiJ_G0024428.1 mouse_genomes_project 19 46571747 46573273 - Col17a1 protein_coding processed_transcript MGP_CASTEiJ_T0051914.1 MGP_CASTEiJ_G0024428.1 mouse_genomes_project 19 46594934 46598182 - Col17a1 protein_coding processed_transcript MGP_CASTEiJ_T0051203.1 MGP_CASTEiJ_G0024198.1 mouse_genomes_project 19 22189763 22195345 + MGP_CASTEiJ_P0051203 Tmem252 protein_coding protein_coding MGP_CASTEiJ_T0051500.1 MGP_CASTEiJ_G0024296.1 mouse_genomes_project 19 37360661 37404747 + MGP_CASTEiJ_P0051500 Hells protein_coding protein_coding MGP_CASTEiJ_T0051501.1 MGP_CASTEiJ_G0024296.1 mouse_genomes_project 19 37360776 37372195 + Hells protein_coding retained_intron MGP_CASTEiJ_T0051502.1 MGP_CASTEiJ_G0024296.1 mouse_genomes_project 19 37360922 37375550 + MGP_CASTEiJ_P0051502 Hells protein_coding protein_coding MGP_CASTEiJ_T0051503.1 MGP_CASTEiJ_G0024296.1 mouse_genomes_project 19 37361138 37385159 + Hells protein_coding processed_transcript MGP_CASTEiJ_T0051504.1 MGP_CASTEiJ_G0024296.1 mouse_genomes_project 19 37364247 37372296 + Hells protein_coding retained_intron MGP_CASTEiJ_T0051505.1 MGP_CASTEiJ_G0024296.1 mouse_genomes_project 19 37375324 37382108 + Hells protein_coding processed_transcript MGP_CASTEiJ_T0050649.1 MGP_CASTEiJ_G0023971.1 mouse_genomes_project 19 3546775 3553940 - MGP_CASTEiJ_P0050649 Slc22a12 protein_coding protein_coding MGP_CASTEiJ_T0050650.1 MGP_CASTEiJ_G0023971.1 mouse_genomes_project 19 3546985 3552472 - Slc22a12 protein_coding processed_transcript MGP_CASTEiJ_T0050651.1 MGP_CASTEiJ_G0023971.1 mouse_genomes_project 19 3548660 3553632 - MGP_CASTEiJ_P0050651 Slc22a12 protein_coding protein_coding MGP_CASTEiJ_T0050413.1 MGP_CASTEiJ_G0023925.1 mouse_genomes_project 19 2579519 2589492 + MGP_CASTEiJ_P0050413 Rela protein_coding protein_coding MGP_CASTEiJ_T0051169.1 MGP_CASTEiJ_G0024181.1 mouse_genomes_project 19 18900856 18983480 - MGP_CASTEiJ_P0051169 1110059E24Rik protein_coding protein_coding MGP_CASTEiJ_T0051170.1 MGP_CASTEiJ_G0024181.1 mouse_genomes_project 19 18920928 18983552 - MGP_CASTEiJ_P0051170 1110059E24Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051171.1 MGP_CASTEiJ_G0024181.1 mouse_genomes_project 19 18921397 18960604 - MGP_CASTEiJ_P0051171 1110059E24Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051172.1 MGP_CASTEiJ_G0024181.1 mouse_genomes_project 19 18921417 18983460 - MGP_CASTEiJ_P0051172 1110059E24Rik protein_coding protein_coding MGP_CASTEiJ_T0051173.1 MGP_CASTEiJ_G0024181.1 mouse_genomes_project 19 18921552 18983669 - MGP_CASTEiJ_P0051173 1110059E24Rik protein_coding protein_coding MGP_CASTEiJ_T0051174.1 MGP_CASTEiJ_G0024181.1 mouse_genomes_project 19 18922053 18983362 - MGP_CASTEiJ_P0051174 1110059E24Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051175.1 MGP_CASTEiJ_G0024181.1 mouse_genomes_project 19 18940393 18983545 - 1110059E24Rik protein_coding retained_intron MGP_CASTEiJ_T0051089.1 MGP_CASTEiJ_G0024140.1 mouse_genomes_project 19 10114335 10115262 + MGP_CASTEiJ_P0051089 Olfr1467 protein_coding protein_coding MGP_CASTEiJ_T0011142.1 MGP_CASTEiJ_G0009330.1 mouse_genomes_project 19 2794835 2794945 - Gm27505 misc_RNA misc_RNA MGP_CASTEiJ_T0050432.1 MGP_CASTEiJ_G0023930.1 mouse_genomes_project 19 2650586 2669910 - MGP_CASTEiJ_P0050432 Ehbp1l1 protein_coding protein_coding MGP_CASTEiJ_T0050433.1 MGP_CASTEiJ_G0023930.1 mouse_genomes_project 19 2650586 2669910 - MGP_CASTEiJ_P0050433 Ehbp1l1 protein_coding protein_coding MGP_CASTEiJ_T0012982.1 MGP_CASTEiJ_G0011145.1 mouse_genomes_project 19 17838903 17839587 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0050461.1 MGP_CASTEiJ_G0023939.1 mouse_genomes_project 19 2870303 2877545 - MGP_CASTEiJ_P0050461 Cdc42ep2 protein_coding protein_coding MGP_CASTEiJ_T0051104.1 MGP_CASTEiJ_G0024155.1 mouse_genomes_project 19 10787583 10788668 - MGP_CASTEiJ_P0051104 Olfr1504 protein_coding protein_coding MGP_CASTEiJ_T0051125.1 MGP_CASTEiJ_G0024165.1 mouse_genomes_project 19 14385334 14425742 - MGP_CASTEiJ_P0051125 Gcnt1 protein_coding protein_coding MGP_CASTEiJ_T0051126.1 MGP_CASTEiJ_G0024165.1 mouse_genomes_project 19 14385336 14400937 - MGP_CASTEiJ_P0051126 Gcnt1 protein_coding protein_coding MGP_CASTEiJ_T0051127.1 MGP_CASTEiJ_G0024165.1 mouse_genomes_project 19 14391419 14425742 - Gcnt1 protein_coding retained_intron MGP_CASTEiJ_T0050698.1 MGP_CASTEiJ_G0023992.1 mouse_genomes_project 19 4132766 4140696 - MGP_CASTEiJ_P0050698 Otub1 protein_coding protein_coding MGP_CASTEiJ_T0050699.1 MGP_CASTEiJ_G0023992.1 mouse_genomes_project 19 4132774 4140614 - MGP_CASTEiJ_P0050699 Otub1 protein_coding protein_coding MGP_CASTEiJ_T0050700.1 MGP_CASTEiJ_G0023992.1 mouse_genomes_project 19 4134114 4135046 - Otub1 protein_coding retained_intron MGP_CASTEiJ_T0050701.1 MGP_CASTEiJ_G0023992.1 mouse_genomes_project 19 4134285 4140155 - MGP_CASTEiJ_P0050701 Otub1 protein_coding protein_coding MGP_CASTEiJ_T0050702.1 MGP_CASTEiJ_G0023992.1 mouse_genomes_project 19 4134315 4138784 - Otub1 protein_coding retained_intron MGP_CASTEiJ_T0051037.1 MGP_CASTEiJ_G0024102.1 mouse_genomes_project 19 8631346 8665276 + MGP_CASTEiJ_P0051037 Patl1 protein_coding protein_coding MGP_CASTEiJ_T0051474.1 MGP_CASTEiJ_G0024287.1 mouse_genomes_project 19 36458149 36475213 + MGP_CASTEiJ_P0051474 Ffar4 protein_coding protein_coding MGP_CASTEiJ_T0051511.1 MGP_CASTEiJ_G0024300.1 mouse_genomes_project 19 37709113 37802050 - MGP_CASTEiJ_P0051511 Cyp2c38 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052143.1 MGP_CASTEiJ_G0024497.1 mouse_genomes_project 19 61081265 61086818 - MGP_CASTEiJ_P0052143 Csf2ra protein_coding protein_coding MGP_CASTEiJ_T0052144.1 MGP_CASTEiJ_G0024497.1 mouse_genomes_project 19 61081868 61086834 - MGP_CASTEiJ_P0052144 Csf2ra protein_coding unknown_likely_coding MGP_CASTEiJ_T0051715.1 MGP_CASTEiJ_G0024364.1 mouse_genomes_project 19 42865380 42879863 + MGP_CASTEiJ_P0051715 Scd2 protein_coding protein_coding MGP_CASTEiJ_T0051716.1 MGP_CASTEiJ_G0024364.1 mouse_genomes_project 19 42866091 42879863 + MGP_CASTEiJ_P0051716 Scd2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050517.1 MGP_CASTEiJ_G0023953.1 mouse_genomes_project 19 3059955 3067401 + MGP_CASTEiJ_P0050517 Cdca5 protein_coding protein_coding MGP_CASTEiJ_T0050518.1 MGP_CASTEiJ_G0023953.1 mouse_genomes_project 19 3060725 3067401 + Cdca5 protein_coding processed_transcript MGP_CASTEiJ_T0050519.1 MGP_CASTEiJ_G0023953.1 mouse_genomes_project 19 3060801 3067401 + Cdca5 protein_coding processed_transcript MGP_CASTEiJ_T0050760.1 MGP_CASTEiJ_G0024008.1 mouse_genomes_project 19 5384420 5394744 + MGP_CASTEiJ_P0050760 Slc22a6 protein_coding protein_coding MGP_CASTEiJ_T0050337.1 MGP_CASTEiJ_G0023898.1 mouse_genomes_project 19 1994591 2001943 - MGP_CASTEiJ_P0050337 Cnih2 protein_coding protein_coding MGP_CASTEiJ_T0051351.1 MGP_CASTEiJ_G0024240.1 mouse_genomes_project 19 29847941 29933668 + MGP_CASTEiJ_P0051351 A1cf protein_coding protein_coding MGP_CASTEiJ_T0050306.1 MGP_CASTEiJ_G0023884.1 mouse_genomes_project 19 1751081 1753419 - Actn3 protein_coding processed_transcript MGP_CASTEiJ_T0050307.1 MGP_CASTEiJ_G0023884.1 mouse_genomes_project 19 1751081 1771452 - MGP_CASTEiJ_P0050307 Actn3 protein_coding protein_coding MGP_CASTEiJ_T0050926.1 MGP_CASTEiJ_G0024063.1 mouse_genomes_project 19 7363450 7384181 - MGP_CASTEiJ_P0050926 Cd5 protein_coding protein_coding MGP_CASTEiJ_T0051508.1 MGP_CASTEiJ_G0024299.1 mouse_genomes_project 19 37616875 37673550 + MGP_CASTEiJ_P0051508 Cyp2c29 protein_coding protein_coding MGP_CASTEiJ_T0051509.1 MGP_CASTEiJ_G0024299.1 mouse_genomes_project 19 37625599 37673601 + MGP_CASTEiJ_P0051509 Cyp2c29 protein_coding protein_coding MGP_CASTEiJ_T0051510.1 MGP_CASTEiJ_G0024299.1 mouse_genomes_project 19 37625599 37673615 + MGP_CASTEiJ_P0051510 Cyp2c29 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050542.1 MGP_CASTEiJ_G0023961.1 mouse_genomes_project 19 3227780 3235915 - MGP_CASTEiJ_P0050542 Ppp2r5b protein_coding protein_coding MGP_CASTEiJ_T0050543.1 MGP_CASTEiJ_G0023961.1 mouse_genomes_project 19 3229323 3230518 - Ppp2r5b protein_coding retained_intron MGP_CASTEiJ_T0050544.1 MGP_CASTEiJ_G0023961.1 mouse_genomes_project 19 3233978 3235886 - Ppp2r5b protein_coding processed_transcript MGP_CASTEiJ_T0050850.1 MGP_CASTEiJ_G0024028.1 mouse_genomes_project 19 5685369 5703966 + MGP_CASTEiJ_P0050850 Ganab protein_coding protein_coding MGP_CASTEiJ_T0050851.1 MGP_CASTEiJ_G0024028.1 mouse_genomes_project 19 5685401 5703972 + MGP_CASTEiJ_P0050851 Ganab protein_coding unknown_likely_coding MGP_CASTEiJ_T0050668.1 MGP_CASTEiJ_G0023977.1 mouse_genomes_project 19 3835861 3847306 - MGP_CASTEiJ_P0050668 Kcnk4 protein_coding unknown_likely_coding MGP_CASTEiJ_T0006906.1 MGP_CASTEiJ_G0005685.1 mouse_genomes_project 19 35443618 35466814 + A330032B11Rik lincRNA lincRNA MGP_CASTEiJ_T0011144.1 MGP_CASTEiJ_G0009332.1 mouse_genomes_project 19 5446907 5447236 - Gm22820 misc_RNA misc_RNA MGP_CASTEiJ_T0010030.1 MGP_CASTEiJ_G0008218.1 mouse_genomes_project 19 37441761 37441825 - Gm23800 miRNA miRNA MGP_CASTEiJ_T0050293.1 MGP_CASTEiJ_G0023879.1 mouse_genomes_project 19 1664724 1674898 - MGP_CASTEiJ_P0050293 Rbm4 protein_coding protein_coding MGP_CASTEiJ_T0050296.1 MGP_CASTEiJ_G0023879.1 mouse_genomes_project 19 1665581 1674848 - MGP_CASTEiJ_P0050296 Rbm4 protein_coding protein_coding MGP_CASTEiJ_T0050297.1 MGP_CASTEiJ_G0023879.1 mouse_genomes_project 19 1670514 1674880 - Rbm4 protein_coding retained_intron MGP_CASTEiJ_T0051142.1 MGP_CASTEiJ_G0024170.1 mouse_genomes_project 19 15818972 15857946 + MGP_CASTEiJ_P0051142 Carnmt1 protein_coding protein_coding MGP_CASTEiJ_T0050149.1 MGP_CASTEiJ_G0023838.1 mouse_genomes_project 19 708986 712815 - MGP_CASTEiJ_P0050149 Ndufs8 protein_coding protein_coding MGP_CASTEiJ_T0051893.1 MGP_CASTEiJ_G0024425.1 mouse_genomes_project 19 46154690 46381366 - MGP_CASTEiJ_P0051893 Sh3pxd2a protein_coding protein_coding MGP_CASTEiJ_T0051894.1 MGP_CASTEiJ_G0024425.1 mouse_genomes_project 19 46154690 46381366 - MGP_CASTEiJ_P0051894 Sh3pxd2a protein_coding protein_coding MGP_CASTEiJ_T0051204.1 MGP_CASTEiJ_G0024199.1 mouse_genomes_project 19 22198697 22383250 - MGP_CASTEiJ_P0051204 Pgm5 protein_coding protein_coding MGP_CASTEiJ_T0051205.1 MGP_CASTEiJ_G0024199.1 mouse_genomes_project 19 22200235 22282070 - Pgm5 protein_coding processed_transcript MGP_CASTEiJ_T0051206.1 MGP_CASTEiJ_G0024199.1 mouse_genomes_project 19 22336483 22383082 - Pgm5 protein_coding retained_intron MGP_CASTEiJ_T0051207.1 MGP_CASTEiJ_G0024199.1 mouse_genomes_project 19 22336585 22383047 - Pgm5 protein_coding retained_intron MGP_CASTEiJ_T0011155.1 MGP_CASTEiJ_G0009343.1 mouse_genomes_project 19 58462616 58462700 - Gm22561 misc_RNA misc_RNA MGP_CASTEiJ_T0051568.1 MGP_CASTEiJ_G0024317.1 mouse_genomes_project 19 39579755 39634659 - MGP_CASTEiJ_P0051568 Tm9sf3 protein_coding protein_coding MGP_CASTEiJ_T0050137.1 MGP_CASTEiJ_G0023837.1 mouse_genomes_project 19 695290 701979 - Tcirg1 protein_coding retained_intron MGP_CASTEiJ_T0050138.1 MGP_CASTEiJ_G0023837.1 mouse_genomes_project 19 695290 707231 - MGP_CASTEiJ_P0050138 Tcirg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050139.1 MGP_CASTEiJ_G0023837.1 mouse_genomes_project 19 695290 707110 - MGP_CASTEiJ_P0050139 Tcirg1 protein_coding protein_coding MGP_CASTEiJ_T0050140.1 MGP_CASTEiJ_G0023837.1 mouse_genomes_project 19 695290 707252 - MGP_CASTEiJ_P0050140 Tcirg1 protein_coding protein_coding MGP_CASTEiJ_T0050141.1 MGP_CASTEiJ_G0023837.1 mouse_genomes_project 19 695290 705349 - MGP_CASTEiJ_P0050141 Tcirg1 protein_coding protein_coding MGP_CASTEiJ_T0050142.1 MGP_CASTEiJ_G0023837.1 mouse_genomes_project 19 695510 700930 - MGP_CASTEiJ_P0050142 Tcirg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050143.1 MGP_CASTEiJ_G0023837.1 mouse_genomes_project 19 695640 696471 - Tcirg1 protein_coding retained_intron MGP_CASTEiJ_T0050144.1 MGP_CASTEiJ_G0023837.1 mouse_genomes_project 19 696311 697072 - Tcirg1 protein_coding retained_intron MGP_CASTEiJ_T0050145.1 MGP_CASTEiJ_G0023837.1 mouse_genomes_project 19 697798 702262 - MGP_CASTEiJ_P0050145 Tcirg1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050146.1 MGP_CASTEiJ_G0023837.1 mouse_genomes_project 19 701149 702153 - Tcirg1 protein_coding retained_intron MGP_CASTEiJ_T0050147.1 MGP_CASTEiJ_G0023837.1 mouse_genomes_project 19 701400 707159 - Tcirg1 protein_coding retained_intron MGP_CASTEiJ_T0050148.1 MGP_CASTEiJ_G0023837.1 mouse_genomes_project 19 701600 703328 - Tcirg1 protein_coding retained_intron MGP_CASTEiJ_T0012995.1 MGP_CASTEiJ_G0011158.1 mouse_genomes_project 19 52652909 52661872 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052133.1 MGP_CASTEiJ_G0024496.1 mouse_genomes_project 19 60839410 60930360 - MGP_CASTEiJ_P0052133 Zfp950 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052134.1 MGP_CASTEiJ_G0024496.1 mouse_genomes_project 19 60902893 60930405 - MGP_CASTEiJ_P0052134 Zfp950 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052135.1 MGP_CASTEiJ_G0024496.1 mouse_genomes_project 19 60904439 60905274 - Zfp950 protein_coding retained_intron MGP_CASTEiJ_T0052136.1 MGP_CASTEiJ_G0024496.1 mouse_genomes_project 19 60905024 60930382 - MGP_CASTEiJ_P0052136 Zfp950 protein_coding protein_coding MGP_CASTEiJ_T0052137.1 MGP_CASTEiJ_G0024496.1 mouse_genomes_project 19 60905043 60930384 - MGP_CASTEiJ_P0052137 Zfp950 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052138.1 MGP_CASTEiJ_G0024496.1 mouse_genomes_project 19 60905174 60930335 - MGP_CASTEiJ_P0052138 Zfp950 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052139.1 MGP_CASTEiJ_G0024496.1 mouse_genomes_project 19 60906032 60930327 - MGP_CASTEiJ_P0052139 Zfp950 protein_coding protein_coding MGP_CASTEiJ_T0052140.1 MGP_CASTEiJ_G0024496.1 mouse_genomes_project 19 60907336 60907507 - MGP_CASTEiJ_P0052140 Zfp950 protein_coding protein_coding MGP_CASTEiJ_T0052141.1 MGP_CASTEiJ_G0024496.1 mouse_genomes_project 19 60910042 60930355 - MGP_CASTEiJ_P0052141 Zfp950 protein_coding protein_coding MGP_CASTEiJ_T0052142.1 MGP_CASTEiJ_G0024496.1 mouse_genomes_project 19 60917594 60918158 - MGP_CASTEiJ_P0052142 Zfp950 protein_coding protein_coding MGP_CASTEiJ_T0100835.1 MGP_CASTEiJ_G0037748.1 mouse_genomes_project 19 21092051 21092153 + Gm22144 snoRNA snoRNA MGP_CASTEiJ_T0051405.1 MGP_CASTEiJ_G0024265.1 mouse_genomes_project 19 32740440 32823268 - MGP_CASTEiJ_P0051405 Slc16a12 protein_coding protein_coding MGP_CASTEiJ_T0051648.1 MGP_CASTEiJ_G0024345.1 mouse_genomes_project 19 41237443 41264556 - MGP_CASTEiJ_P0051648 Hps1 protein_coding protein_coding MGP_CASTEiJ_T0051649.1 MGP_CASTEiJ_G0024345.1 mouse_genomes_project 19 41237533 41264537 - Hps1 protein_coding retained_intron MGP_CASTEiJ_T0051650.1 MGP_CASTEiJ_G0024345.1 mouse_genomes_project 19 41237533 41263207 - MGP_CASTEiJ_P0051650 Hps1 protein_coding protein_coding MGP_CASTEiJ_T0051651.1 MGP_CASTEiJ_G0024345.1 mouse_genomes_project 19 41237535 41264554 - MGP_CASTEiJ_P0051651 Hps1 protein_coding protein_coding MGP_CASTEiJ_T0051652.1 MGP_CASTEiJ_G0024345.1 mouse_genomes_project 19 41237920 41240182 - MGP_CASTEiJ_P0051652 Hps1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051653.1 MGP_CASTEiJ_G0024345.1 mouse_genomes_project 19 41240433 41264543 - MGP_CASTEiJ_P0051653 Hps1 protein_coding protein_coding MGP_CASTEiJ_T0051654.1 MGP_CASTEiJ_G0024345.1 mouse_genomes_project 19 41240831 41262822 - MGP_CASTEiJ_P0051654 Hps1 protein_coding protein_coding MGP_CASTEiJ_T0051655.1 MGP_CASTEiJ_G0024345.1 mouse_genomes_project 19 41242728 41246202 - Hps1 protein_coding retained_intron MGP_CASTEiJ_T0051656.1 MGP_CASTEiJ_G0024345.1 mouse_genomes_project 19 41250959 41253930 - Hps1 protein_coding retained_intron MGP_CASTEiJ_T0051764.1 MGP_CASTEiJ_G0024386.1 mouse_genomes_project 19 44287453 44378501 - MGP_CASTEiJ_P0051764 Fbxw4 protein_coding protein_coding MGP_CASTEiJ_T0051766.1 MGP_CASTEiJ_G0024386.1 mouse_genomes_project 19 44287653 44304099 - MGP_CASTEiJ_P0051766 Fbxw4 protein_coding protein_coding MGP_CASTEiJ_T0051767.1 MGP_CASTEiJ_G0024386.1 mouse_genomes_project 19 44287818 44304067 - MGP_CASTEiJ_P0051767 Fbxw4 protein_coding protein_coding MGP_CASTEiJ_T0051768.1 MGP_CASTEiJ_G0024386.1 mouse_genomes_project 19 44287998 44302455 - MGP_CASTEiJ_P0051768 Fbxw4 protein_coding protein_coding MGP_CASTEiJ_T0051769.1 MGP_CASTEiJ_G0024386.1 mouse_genomes_project 19 44288000 44289094 - Fbxw4 protein_coding retained_intron MGP_CASTEiJ_T0051770.1 MGP_CASTEiJ_G0024386.1 mouse_genomes_project 19 44288044 44302455 - MGP_CASTEiJ_P0051770 Fbxw4 protein_coding protein_coding MGP_CASTEiJ_T0051771.1 MGP_CASTEiJ_G0024386.1 mouse_genomes_project 19 44288115 44303261 - MGP_CASTEiJ_P0051771 Fbxw4 protein_coding protein_coding MGP_CASTEiJ_T0051772.1 MGP_CASTEiJ_G0024386.1 mouse_genomes_project 19 44288965 44344052 - Fbxw4 protein_coding retained_intron MGP_CASTEiJ_T0051773.1 MGP_CASTEiJ_G0024386.1 mouse_genomes_project 19 44302073 44344052 - Fbxw4 protein_coding retained_intron MGP_CASTEiJ_T0051774.1 MGP_CASTEiJ_G0024386.1 mouse_genomes_project 19 44343789 44355914 - MGP_CASTEiJ_P0051774 Fbxw4 protein_coding protein_coding MGP_CASTEiJ_T0051041.1 MGP_CASTEiJ_G0024106.1 mouse_genomes_project 19 8848386 8849324 - MGP_CASTEiJ_P0051041 Olfr1427 protein_coding protein_coding MGP_CASTEiJ_T0051743.1 MGP_CASTEiJ_G0024375.1 mouse_genomes_project 19 43663742 43665055 - MGP_CASTEiJ_P0051743 Mrpl43 protein_coding protein_coding MGP_CASTEiJ_T0050287.1 MGP_CASTEiJ_G0023878.1 mouse_genomes_project 19 1636157 1642585 + Rbm4b protein_coding retained_intron MGP_CASTEiJ_T0050288.1 MGP_CASTEiJ_G0023878.1 mouse_genomes_project 19 1636178 1640414 + Rbm4b protein_coding processed_transcript MGP_CASTEiJ_T0050289.1 MGP_CASTEiJ_G0023878.1 mouse_genomes_project 19 1636179 1641051 + Rbm4b protein_coding retained_intron MGP_CASTEiJ_T0050290.1 MGP_CASTEiJ_G0023878.1 mouse_genomes_project 19 1636185 1645642 + MGP_CASTEiJ_P0050290 Rbm4b protein_coding protein_coding MGP_CASTEiJ_T0050291.1 MGP_CASTEiJ_G0023878.1 mouse_genomes_project 19 1641104 1646760 + Rbm4b protein_coding retained_intron MGP_CASTEiJ_T0050292.1 MGP_CASTEiJ_G0023878.1 mouse_genomes_project 19 1644171 1645345 + Rbm4b protein_coding processed_transcript MGP_CASTEiJ_T0050506.1 MGP_CASTEiJ_G0023951.1 mouse_genomes_project 19 3055008 3055761 + MGP_CASTEiJ_P0050506 Tmem262 protein_coding protein_coding MGP_CASTEiJ_T0050507.1 MGP_CASTEiJ_G0023951.1 mouse_genomes_project 19 3055008 3055764 + MGP_CASTEiJ_P0050507 Tmem262 protein_coding protein_coding MGP_CASTEiJ_T0051028.1 MGP_CASTEiJ_G0024096.1 mouse_genomes_project 19 8386555 8404572 + MGP_CASTEiJ_P0051028 Oosp3 protein_coding protein_coding MGP_CASTEiJ_T0051029.1 MGP_CASTEiJ_G0024096.1 mouse_genomes_project 19 8386578 8404588 + MGP_CASTEiJ_P0051029 Oosp3 protein_coding protein_coding MGP_CASTEiJ_T0051637.1 MGP_CASTEiJ_G0024342.1 mouse_genomes_project 19 40981463 41065822 + MGP_CASTEiJ_P0051637 R3hcc1l protein_coding protein_coding MGP_CASTEiJ_T0051638.1 MGP_CASTEiJ_G0024342.1 mouse_genomes_project 19 40981502 41064413 + MGP_CASTEiJ_P0051638 R3hcc1l protein_coding protein_coding MGP_CASTEiJ_T0051639.1 MGP_CASTEiJ_G0024342.1 mouse_genomes_project 19 40981526 41048729 + MGP_CASTEiJ_P0051639 R3hcc1l protein_coding protein_coding MGP_CASTEiJ_T0051640.1 MGP_CASTEiJ_G0024342.1 mouse_genomes_project 19 41036249 41049296 + R3hcc1l protein_coding retained_intron MGP_CASTEiJ_T0051641.1 MGP_CASTEiJ_G0024342.1 mouse_genomes_project 19 41053738 41057318 + R3hcc1l protein_coding retained_intron MGP_CASTEiJ_T0050705.1 MGP_CASTEiJ_G0023995.1 mouse_genomes_project 19 4205697 4208515 + MGP_CASTEiJ_P0050705 Rcor2 protein_coding protein_coding MGP_CASTEiJ_T0050706.1 MGP_CASTEiJ_G0023995.1 mouse_genomes_project 19 4207332 4213573 + MGP_CASTEiJ_P0050706 Rcor2 protein_coding protein_coding MGP_CASTEiJ_T0050707.1 MGP_CASTEiJ_G0023995.1 mouse_genomes_project 19 4209322 4210105 + Rcor2 protein_coding retained_intron MGP_CASTEiJ_T0051050.1 MGP_CASTEiJ_G0024115.1 mouse_genomes_project 19 9327037 9346274 + MGP_CASTEiJ_P0051050 Fam111a protein_coding protein_coding MGP_CASTEiJ_T0051051.1 MGP_CASTEiJ_G0024115.1 mouse_genomes_project 19 9327037 9346282 + MGP_CASTEiJ_P0051051 Fam111a protein_coding protein_coding MGP_CASTEiJ_T0051052.1 MGP_CASTEiJ_G0024115.1 mouse_genomes_project 19 9332330 9346276 + MGP_CASTEiJ_P0051052 Fam111a protein_coding protein_coding MGP_CASTEiJ_T0051819.1 MGP_CASTEiJ_G0024397.1 mouse_genomes_project 19 44915072 44927829 - MGP_CASTEiJ_P0051819 Pitx3 protein_coding protein_coding MGP_CASTEiJ_T0051820.1 MGP_CASTEiJ_G0024397.1 mouse_genomes_project 19 44915882 44916677 - Pitx3 protein_coding retained_intron MGP_CASTEiJ_T0051821.1 MGP_CASTEiJ_G0024397.1 mouse_genomes_project 19 44916419 44920408 - MGP_CASTEiJ_P0051821 Pitx3 protein_coding protein_coding MGP_CASTEiJ_T0006878.1 MGP_CASTEiJ_G0005666.1 mouse_genomes_project 19 2774981 2795683 - Neat1 lincRNA lincRNA MGP_CASTEiJ_T0006879.1 MGP_CASTEiJ_G0005666.1 mouse_genomes_project 19 2792522 2795681 - Neat1 lincRNA lincRNA MGP_CASTEiJ_T0006880.1 MGP_CASTEiJ_G0005666.1 mouse_genomes_project 19 2793895 2795464 - Neat1 lincRNA lincRNA MGP_CASTEiJ_T0052128.1 MGP_CASTEiJ_G0024493.1 mouse_genomes_project 19 60615248 60641070 - MGP_CASTEiJ_P0052128 Sfxn4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052129.1 MGP_CASTEiJ_G0024493.1 mouse_genomes_project 19 60617286 60641122 - MGP_CASTEiJ_P0052129 Sfxn4 protein_coding protein_coding MGP_CASTEiJ_T0052130.1 MGP_CASTEiJ_G0024493.1 mouse_genomes_project 19 60617296 60641067 - MGP_CASTEiJ_P0052130 Sfxn4 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0010014.1 MGP_CASTEiJ_G0008202.1 mouse_genomes_project 19 5511338 5511447 + Mir6992 miRNA miRNA MGP_CASTEiJ_T0006912.1 MGP_CASTEiJ_G0005690.1 mouse_genomes_project 19 43320666 43323592 - Gm26644 lincRNA lincRNA MGP_CASTEiJ_T0050774.1 MGP_CASTEiJ_G0024013.1 mouse_genomes_project 19 5509779 5525172 + MGP_CASTEiJ_P0050774 Stx5a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050775.1 MGP_CASTEiJ_G0024013.1 mouse_genomes_project 19 5509836 5511038 + Stx5a protein_coding retained_intron MGP_CASTEiJ_T0050776.1 MGP_CASTEiJ_G0024013.1 mouse_genomes_project 19 5509854 5525188 + MGP_CASTEiJ_P0050776 Stx5a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050777.1 MGP_CASTEiJ_G0024013.1 mouse_genomes_project 19 5509855 5525228 + MGP_CASTEiJ_P0050777 Stx5a protein_coding protein_coding MGP_CASTEiJ_T0050778.1 MGP_CASTEiJ_G0024013.1 mouse_genomes_project 19 5509878 5512905 + Stx5a protein_coding retained_intron MGP_CASTEiJ_T0050779.1 MGP_CASTEiJ_G0024013.1 mouse_genomes_project 19 5510035 5511228 + MGP_CASTEiJ_P0050779 Stx5a protein_coding protein_coding MGP_CASTEiJ_T0050780.1 MGP_CASTEiJ_G0024013.1 mouse_genomes_project 19 5510173 5518185 + MGP_CASTEiJ_P0050780 Stx5a protein_coding protein_coding MGP_CASTEiJ_T0050781.1 MGP_CASTEiJ_G0024013.1 mouse_genomes_project 19 5510255 5525228 + MGP_CASTEiJ_P0050781 Stx5a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050782.1 MGP_CASTEiJ_G0024013.1 mouse_genomes_project 19 5510511 5517305 + Stx5a protein_coding retained_intron MGP_CASTEiJ_T0050783.1 MGP_CASTEiJ_G0024013.1 mouse_genomes_project 19 5510640 5524654 + MGP_CASTEiJ_P0050783 Stx5a protein_coding protein_coding MGP_CASTEiJ_T0050784.1 MGP_CASTEiJ_G0024013.1 mouse_genomes_project 19 5511227 5517536 + Stx5a protein_coding retained_intron MGP_CASTEiJ_T0050785.1 MGP_CASTEiJ_G0024013.1 mouse_genomes_project 19 5516919 5524644 + Stx5a protein_coding retained_intron MGP_CASTEiJ_T0050786.1 MGP_CASTEiJ_G0024013.1 mouse_genomes_project 19 5516934 5518126 + Stx5a protein_coding retained_intron MGP_CASTEiJ_T0050787.1 MGP_CASTEiJ_G0024013.1 mouse_genomes_project 19 5516949 5524570 + Stx5a protein_coding retained_intron MGP_CASTEiJ_T0050788.1 MGP_CASTEiJ_G0024013.1 mouse_genomes_project 19 5517006 5517795 + Stx5a protein_coding retained_intron MGP_CASTEiJ_T0050789.1 MGP_CASTEiJ_G0024013.1 mouse_genomes_project 19 5517815 5518507 + MGP_CASTEiJ_P0050789 Stx5a protein_coding protein_coding MGP_CASTEiJ_T0099606.1 MGP_CASTEiJ_G0036519.1 mouse_genomes_project 19 35510307 35510415 - Gm25268 snRNA snRNA MGP_CASTEiJ_T0050444.1 MGP_CASTEiJ_G0023935.1 mouse_genomes_project 19 2799868 2825609 - MGP_CASTEiJ_P0050444 Frmd8 protein_coding protein_coding MGP_CASTEiJ_T0050445.1 MGP_CASTEiJ_G0023935.1 mouse_genomes_project 19 2812307 2813866 - Frmd8 protein_coding retained_intron MGP_CASTEiJ_T0050446.1 MGP_CASTEiJ_G0023935.1 mouse_genomes_project 19 2815370 2823761 - Frmd8 protein_coding retained_intron MGP_CASTEiJ_T0050447.1 MGP_CASTEiJ_G0023935.1 mouse_genomes_project 19 2815456 2825574 - MGP_CASTEiJ_P0050447 Frmd8 protein_coding protein_coding MGP_CASTEiJ_T0100826.1 MGP_CASTEiJ_G0037739.1 mouse_genomes_project 19 5494450 5494517 + Gm23246 snoRNA snoRNA MGP_CASTEiJ_T0050956.1 MGP_CASTEiJ_G0024070.1 mouse_genomes_project 19 7604219 7609463 + MGP_CASTEiJ_P0050956 Ptgdr2 protein_coding protein_coding MGP_CASTEiJ_T0050327.1 MGP_CASTEiJ_G0023893.1 mouse_genomes_project 19 1943303 1951749 + MGP_CASTEiJ_P0050327 Brms1 protein_coding protein_coding MGP_CASTEiJ_T0050752.1 MGP_CASTEiJ_G0024004.1 mouse_genomes_project 19 4639052 4678886 - MGP_CASTEiJ_P0050752 Slc22a19 protein_coding protein_coding MGP_CASTEiJ_T0050753.1 MGP_CASTEiJ_G0024004.1 mouse_genomes_project 19 4642856 4678855 - Slc22a19 protein_coding retained_intron MGP_CASTEiJ_T0050754.1 MGP_CASTEiJ_G0024004.1 mouse_genomes_project 19 4673592 4678886 - Slc22a19 protein_coding retained_intron MGP_CASTEiJ_T0051060.1 MGP_CASTEiJ_G0024119.1 mouse_genomes_project 19 9442399 9448073 + MGP_CASTEiJ_P0051060 Olfr1443 protein_coding protein_coding MGP_CASTEiJ_T0052119.1 MGP_CASTEiJ_G0024490.1 mouse_genomes_project 19 60527030 60530985 + MGP_CASTEiJ_P0052119 Nanos1 protein_coding protein_coding MGP_CASTEiJ_T0051884.1 MGP_CASTEiJ_G0024419.1 mouse_genomes_project 19 45974051 46016947 + MGP_CASTEiJ_P0051884 Pdcd11 protein_coding protein_coding MGP_CASTEiJ_T0100820.1 MGP_CASTEiJ_G0037733.1 mouse_genomes_project 19 5492845 5492917 + Gm25855 snoRNA snoRNA MGP_CASTEiJ_T0000976.1 MGP_CASTEiJ_G0000912.1 mouse_genomes_project 19 1641811 1644873 - TEC TEC MGP_CASTEiJ_T0051758.1 MGP_CASTEiJ_G0024382.1 mouse_genomes_project 19 43904847 43908007 - MGP_CASTEiJ_P0051758 Lbx1 protein_coding protein_coding MGP_CASTEiJ_T0100832.1 MGP_CASTEiJ_G0037745.1 mouse_genomes_project 19 16461098 16461230 + Gm25437 snoRNA snoRNA MGP_CASTEiJ_T0006921.1 MGP_CASTEiJ_G0005696.1 mouse_genomes_project 19 49756484 49863813 + Gm26629 lincRNA lincRNA MGP_CASTEiJ_T0011148.1 MGP_CASTEiJ_G0009336.1 mouse_genomes_project 19 28162024 28162305 + Gm24883 misc_RNA misc_RNA MGP_CASTEiJ_T0050406.1 MGP_CASTEiJ_G0023922.1 mouse_genomes_project 19 2507658 2510846 + MGP_CASTEiJ_P0050406 Ap5b1 protein_coding protein_coding MGP_CASTEiJ_T0098717.1 MGP_CASTEiJ_G0035648.1 mouse_genomes_project 19 35416595 35416673 - Gm22714 ribozyme ribozyme MGP_CASTEiJ_T0051048.1 MGP_CASTEiJ_G0024113.1 mouse_genomes_project 19 9222065 9226494 + MGP_CASTEiJ_P0051048 Mpeg1 protein_coding protein_coding MGP_CASTEiJ_T0050448.1 MGP_CASTEiJ_G0023936.1 mouse_genomes_project 19 2828161 2836121 + MGP_CASTEiJ_P0050448 Slc25a45 protein_coding protein_coding MGP_CASTEiJ_T0050449.1 MGP_CASTEiJ_G0023936.1 mouse_genomes_project 19 2828972 2830943 + MGP_CASTEiJ_P0050449 Slc25a45 protein_coding protein_coding MGP_CASTEiJ_T0050450.1 MGP_CASTEiJ_G0023936.1 mouse_genomes_project 19 2828999 2836127 + MGP_CASTEiJ_P0050450 Slc25a45 protein_coding protein_coding MGP_CASTEiJ_T0050451.1 MGP_CASTEiJ_G0023936.1 mouse_genomes_project 19 2829000 2834840 + MGP_CASTEiJ_P0050451 Slc25a45 protein_coding protein_coding MGP_CASTEiJ_T0051165.1 MGP_CASTEiJ_G0024179.1 mouse_genomes_project 19 18698137 18779402 - MGP_CASTEiJ_P0051165 Gda protein_coding protein_coding MGP_CASTEiJ_T0051166.1 MGP_CASTEiJ_G0024179.1 mouse_genomes_project 19 18698141 18779584 - MGP_CASTEiJ_P0051166 Gda protein_coding protein_coding MGP_CASTEiJ_T0051167.1 MGP_CASTEiJ_G0024179.1 mouse_genomes_project 19 18726836 18779500 - Gda protein_coding retained_intron MGP_CASTEiJ_T0050348.1 MGP_CASTEiJ_G0023901.1 mouse_genomes_project 19 2042413 2192237 - MGP_CASTEiJ_P0050348 Pacs1 protein_coding protein_coding MGP_CASTEiJ_T0010041.1 MGP_CASTEiJ_G0008229.1 mouse_genomes_project 19 48723981 48724060 - Gm27935 miRNA miRNA MGP_CASTEiJ_T0006890.1 MGP_CASTEiJ_G0005675.1 mouse_genomes_project 19 20540708 20541526 + 2410080I02Rik lincRNA lincRNA MGP_CASTEiJ_T0051588.1 MGP_CASTEiJ_G0024326.1 mouse_genomes_project 19 40342278 40350556 + MGP_CASTEiJ_P0051588 Pgam1 protein_coding protein_coding MGP_CASTEiJ_T0012978.1 MGP_CASTEiJ_G0011141.1 mouse_genomes_project 19 12905151 12905707 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0051889.1 MGP_CASTEiJ_G0024423.1 mouse_genomes_project 19 46060753 46061411 - MGP_CASTEiJ_P0051889 Gm6970 protein_coding protein_coding MGP_CASTEiJ_T0051387.1 MGP_CASTEiJ_G0024256.1 mouse_genomes_project 19 32160273 32193386 - MGP_CASTEiJ_P0051387 Ankrd22 protein_coding protein_coding MGP_CASTEiJ_T0051388.1 MGP_CASTEiJ_G0024256.1 mouse_genomes_project 19 32160649 32166616 - Ankrd22 protein_coding processed_transcript MGP_CASTEiJ_T0099613.1 MGP_CASTEiJ_G0036526.1 mouse_genomes_project 19 52408855 52408962 - Gm24724 snRNA snRNA MGP_CASTEiJ_T0050270.1 MGP_CASTEiJ_G0023870.1 mouse_genomes_project 19 1299000 1333996 - MGP_CASTEiJ_P0050270 Syt12 protein_coding protein_coding MGP_CASTEiJ_T0050271.1 MGP_CASTEiJ_G0023870.1 mouse_genomes_project 19 1300830 1305077 - Syt12 protein_coding processed_transcript MGP_CASTEiJ_T0050272.1 MGP_CASTEiJ_G0023870.1 mouse_genomes_project 19 1311550 1333678 - MGP_CASTEiJ_P0050272 Syt12 protein_coding protein_coding MGP_CASTEiJ_T0050273.1 MGP_CASTEiJ_G0023870.1 mouse_genomes_project 19 1321082 1333708 - Syt12 protein_coding retained_intron MGP_CASTEiJ_T0050477.1 MGP_CASTEiJ_G0023946.1 mouse_genomes_project 19 3031204 3032773 + MGP_CASTEiJ_P0050477 protein_coding protein_coding MGP_CASTEiJ_T0050540.1 MGP_CASTEiJ_G0023960.1 mouse_genomes_project 19 3226380 3227784 + MGP_CASTEiJ_P0050540 Gpha2 protein_coding protein_coding MGP_CASTEiJ_T0050541.1 MGP_CASTEiJ_G0023960.1 mouse_genomes_project 19 3226388 3227784 + MGP_CASTEiJ_P0050541 Gpha2 protein_coding protein_coding MGP_CASTEiJ_T0051045.1 MGP_CASTEiJ_G0024110.1 mouse_genomes_project 19 9157505 9158453 + MGP_CASTEiJ_P0051045 Olfr1440 protein_coding protein_coding MGP_CASTEiJ_T0010032.1 MGP_CASTEiJ_G0008220.1 mouse_genomes_project 19 39991570 39991709 + Mir8091 miRNA miRNA MGP_CASTEiJ_T0050303.1 MGP_CASTEiJ_G0023881.1 mouse_genomes_project 19 1711566 1725386 - MGP_CASTEiJ_P0050303 Ccs protein_coding protein_coding MGP_CASTEiJ_T0010000.1 MGP_CASTEiJ_G0008188.1 mouse_genomes_project 19 36683 36747 + Mir6984 miRNA miRNA MGP_CASTEiJ_T0010018.1 MGP_CASTEiJ_G0008206.1 mouse_genomes_project 19 6826364 6826429 + Mir6993 miRNA miRNA MGP_CASTEiJ_T0051781.1 MGP_CASTEiJ_G0024388.1 mouse_genomes_project 19 44472043 44473901 - MGP_CASTEiJ_P0051781 Npm3 protein_coding protein_coding MGP_CASTEiJ_T0051782.1 MGP_CASTEiJ_G0024388.1 mouse_genomes_project 19 44472859 44473859 - Npm3 protein_coding retained_intron MGP_CASTEiJ_T0050092.1 MGP_CASTEiJ_G0023829.1 mouse_genomes_project 19 76091 140134 + MGP_CASTEiJ_P0050092 Cpt1a protein_coding protein_coding MGP_CASTEiJ_T0050749.1 MGP_CASTEiJ_G0024003.1 mouse_genomes_project 19 4578305 4580529 + Hrasls5 protein_coding retained_intron MGP_CASTEiJ_T0050750.1 MGP_CASTEiJ_G0024003.1 mouse_genomes_project 19 4578319 4606592 + MGP_CASTEiJ_P0050750 Hrasls5 protein_coding protein_coding MGP_CASTEiJ_T0050751.1 MGP_CASTEiJ_G0024003.1 mouse_genomes_project 19 4578369 4606992 + MGP_CASTEiJ_P0050751 Hrasls5 protein_coding protein_coding MGP_CASTEiJ_T0051145.1 MGP_CASTEiJ_G0024172.1 mouse_genomes_project 19 15909040 16063029 + MGP_CASTEiJ_P0051145 Trpm6 protein_coding protein_coding MGP_CASTEiJ_T0102192.1 MGP_CASTEiJ_G0038917.1 mouse_genomes_project 19 6282739 6292239 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0050880.1 MGP_CASTEiJ_G0024042.1 mouse_genomes_project 19 6631516 6645521 + MGP_CASTEiJ_P0050880 Rab3il1 protein_coding protein_coding MGP_CASTEiJ_T0050881.1 MGP_CASTEiJ_G0024042.1 mouse_genomes_project 19 6634696 6653429 + MGP_CASTEiJ_P0050881 Rab3il1 protein_coding protein_coding MGP_CASTEiJ_T0050882.1 MGP_CASTEiJ_G0024042.1 mouse_genomes_project 19 6634851 6656380 + MGP_CASTEiJ_P0050882 Rab3il1 protein_coding protein_coding MGP_CASTEiJ_T0050883.1 MGP_CASTEiJ_G0024042.1 mouse_genomes_project 19 6649643 6651784 + Rab3il1 protein_coding retained_intron MGP_CASTEiJ_T0051341.1 MGP_CASTEiJ_G0024236.1 mouse_genomes_project 19 28477470 28481262 - MGP_CASTEiJ_P0051341 Dkk1 protein_coding protein_coding MGP_CASTEiJ_T0016929.1 MGP_CASTEiJ_G0014690.1 mouse_genomes_project 19 3269784 3277510 - Gm14963 processed_transcript processed_transcript MGP_CASTEiJ_T0051613.1 MGP_CASTEiJ_G0024332.1 mouse_genomes_project 19 40487828 40494504 + Hoga1 protein_coding processed_transcript MGP_CASTEiJ_T0051614.1 MGP_CASTEiJ_G0024332.1 mouse_genomes_project 19 40488010 40514359 + MGP_CASTEiJ_P0051614 Hoga1 protein_coding protein_coding MGP_CASTEiJ_T0051615.1 MGP_CASTEiJ_G0024332.1 mouse_genomes_project 19 40488050 40514931 + MGP_CASTEiJ_P0051615 Hoga1 protein_coding protein_coding MGP_CASTEiJ_T0051616.1 MGP_CASTEiJ_G0024332.1 mouse_genomes_project 19 40488069 40502035 + Hoga1 protein_coding retained_intron MGP_CASTEiJ_T0098366.1 MGP_CASTEiJ_G0035297.1 mouse_genomes_project 19 59963100 59964442 + pseudogene pseudogene MGP_CASTEiJ_T0050997.1 MGP_CASTEiJ_G0024087.1 mouse_genomes_project 19 8148908 8164366 + MGP_CASTEiJ_P0050997 Ms4a6c protein_coding protein_coding MGP_CASTEiJ_T0050998.1 MGP_CASTEiJ_G0024087.1 mouse_genomes_project 19 8148967 8152317 + Ms4a6c protein_coding retained_intron MGP_CASTEiJ_T0010022.1 MGP_CASTEiJ_G0008210.1 mouse_genomes_project 19 20117387 20117455 + Mir204 miRNA miRNA MGP_CASTEiJ_T0050434.1 MGP_CASTEiJ_G0023931.1 mouse_genomes_project 19 2671675 2675288 - MGP_CASTEiJ_P0050434 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050438.1 MGP_CASTEiJ_G0023931.1 mouse_genomes_project 19 2673900 2675254 - protein_coding retained_intron MGP_CASTEiJ_T0050439.1 MGP_CASTEiJ_G0023931.1 mouse_genomes_project 19 2673900 2675326 - MGP_CASTEiJ_P0050439 protein_coding protein_coding MGP_CASTEiJ_T0050440.1 MGP_CASTEiJ_G0023931.1 mouse_genomes_project 19 2674004 2675069 - MGP_CASTEiJ_P0050440 protein_coding protein_coding MGP_CASTEiJ_T0050441.1 MGP_CASTEiJ_G0023931.1 mouse_genomes_project 19 2674485 2675293 - protein_coding retained_intron MGP_CASTEiJ_T0012984.1 MGP_CASTEiJ_G0011147.1 mouse_genomes_project 19 22209091 22210081 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0051679.1 MGP_CASTEiJ_G0024354.1 mouse_genomes_project 19 42318982 42382498 + MGP_CASTEiJ_P0051679 Abcc2 protein_coding protein_coding MGP_CASTEiJ_T0051680.1 MGP_CASTEiJ_G0024354.1 mouse_genomes_project 19 42319116 42323118 + Abcc2 protein_coding retained_intron MGP_CASTEiJ_T0051681.1 MGP_CASTEiJ_G0024354.1 mouse_genomes_project 19 42319194 42367885 + MGP_CASTEiJ_P0051681 Abcc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051682.1 MGP_CASTEiJ_G0024354.1 mouse_genomes_project 19 42337603 42340387 + Abcc2 protein_coding retained_intron MGP_CASTEiJ_T0051683.1 MGP_CASTEiJ_G0024354.1 mouse_genomes_project 19 42349877 42352788 + Abcc2 protein_coding retained_intron MGP_CASTEiJ_T0051684.1 MGP_CASTEiJ_G0024354.1 mouse_genomes_project 19 42380562 42382486 + MGP_CASTEiJ_P0051684 Abcc2 protein_coding protein_coding MGP_CASTEiJ_T0050923.1 MGP_CASTEiJ_G0024061.1 mouse_genomes_project 19 7312305 7321151 - MGP_CASTEiJ_P0050923 Pga5 protein_coding protein_coding MGP_CASTEiJ_T0050924.1 MGP_CASTEiJ_G0024061.1 mouse_genomes_project 19 7312457 7330136 - MGP_CASTEiJ_P0050924 Pga5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051250.1 MGP_CASTEiJ_G0024211.1 mouse_genomes_project 19 25086018 25121770 - MGP_CASTEiJ_P0051250 Pum3 protein_coding protein_coding MGP_CASTEiJ_T0050927.1 MGP_CASTEiJ_G0024064.1 mouse_genomes_project 19 7436998 7482718 - MGP_CASTEiJ_P0050927 Cd6 protein_coding protein_coding MGP_CASTEiJ_T0050928.1 MGP_CASTEiJ_G0024064.1 mouse_genomes_project 19 7437003 7446438 - Cd6 protein_coding retained_intron MGP_CASTEiJ_T0050929.1 MGP_CASTEiJ_G0024064.1 mouse_genomes_project 19 7437006 7482624 - MGP_CASTEiJ_P0050929 Cd6 protein_coding protein_coding MGP_CASTEiJ_T0050930.1 MGP_CASTEiJ_G0024064.1 mouse_genomes_project 19 7438649 7440655 - Cd6 protein_coding retained_intron MGP_CASTEiJ_T0050931.1 MGP_CASTEiJ_G0024064.1 mouse_genomes_project 19 7442255 7482516 - MGP_CASTEiJ_P0050931 Cd6 protein_coding protein_coding MGP_CASTEiJ_T0000978.1 MGP_CASTEiJ_G0000914.1 mouse_genomes_project 19 8277490 8279022 - TEC TEC MGP_CASTEiJ_T0003754.1 MGP_CASTEiJ_G0003368.1 mouse_genomes_project 19 55858773 55862472 + antisense antisense MGP_CASTEiJ_T0050986.1 MGP_CASTEiJ_G0024082.1 mouse_genomes_project 19 7943980 7957111 - MGP_CASTEiJ_P0050986 Ms4a14 protein_coding protein_coding MGP_CASTEiJ_T0051711.1 MGP_CASTEiJ_G0024362.1 mouse_genomes_project 19 42721699 42764584 - MGP_CASTEiJ_P0051711 Pkd2l1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051712.1 MGP_CASTEiJ_G0024362.1 mouse_genomes_project 19 42721705 42761830 - MGP_CASTEiJ_P0051712 Pkd2l1 protein_coding protein_coding MGP_CASTEiJ_T0051713.1 MGP_CASTEiJ_G0024362.1 mouse_genomes_project 19 42721706 42761830 - Pkd2l1 protein_coding retained_intron MGP_CASTEiJ_T0050156.1 MGP_CASTEiJ_G0023842.1 mouse_genomes_project 19 801052 804504 + MGP_CASTEiJ_P0050156 Acy3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050538.1 MGP_CASTEiJ_G0023959.1 mouse_genomes_project 19 3171604 3224212 + MGP_CASTEiJ_P0050538 Majin protein_coding protein_coding MGP_CASTEiJ_T0050539.1 MGP_CASTEiJ_G0023959.1 mouse_genomes_project 19 3171683 3224218 + MGP_CASTEiJ_P0050539 Majin protein_coding protein_coding MGP_CASTEiJ_T0051219.1 MGP_CASTEiJ_G0024206.1 mouse_genomes_project 19 23280299 23286807 + MGP_CASTEiJ_P0051219 Dmrt2 protein_coding protein_coding MGP_CASTEiJ_T0050355.1 MGP_CASTEiJ_G0023907.1 mouse_genomes_project 19 2295515 2300225 + MGP_CASTEiJ_P0050355 Eif1ad protein_coding protein_coding MGP_CASTEiJ_T0006922.1 MGP_CASTEiJ_G0005697.1 mouse_genomes_project 19 52316135 52324023 + 1700054A03Rik lincRNA lincRNA MGP_CASTEiJ_T0006923.1 MGP_CASTEiJ_G0005697.1 mouse_genomes_project 19 52316169 52324023 + 1700054A03Rik lincRNA lincRNA MGP_CASTEiJ_T0050286.1 MGP_CASTEiJ_G0023877.1 mouse_genomes_project 19 1620897 1696540 - MGP_CASTEiJ_P0050286 Gm21992 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050294.1 MGP_CASTEiJ_G0023877.1 mouse_genomes_project 19 1665580 1696436 - MGP_CASTEiJ_P0050294 Gm21992 protein_coding protein_coding MGP_CASTEiJ_T0050295.1 MGP_CASTEiJ_G0023877.1 mouse_genomes_project 19 1665581 1696140 - MGP_CASTEiJ_P0050295 Gm21992 protein_coding protein_coding MGP_CASTEiJ_T0050298.1 MGP_CASTEiJ_G0023877.1 mouse_genomes_project 19 1671566 1696531 - Gm21992 protein_coding retained_intron MGP_CASTEiJ_T0050299.1 MGP_CASTEiJ_G0023877.1 mouse_genomes_project 19 1673655 1686347 - Gm21992 protein_coding processed_transcript MGP_CASTEiJ_T0050967.1 MGP_CASTEiJ_G0024075.1 mouse_genomes_project 19 7733094 7746240 - MGP_CASTEiJ_P0050967 Ms4a8a protein_coding protein_coding MGP_CASTEiJ_T0050968.1 MGP_CASTEiJ_G0024075.1 mouse_genomes_project 19 7740741 7746240 - Ms4a8a protein_coding retained_intron MGP_CASTEiJ_T0050151.1 MGP_CASTEiJ_G0023840.1 mouse_genomes_project 19 736046 751656 + MGP_CASTEiJ_P0050151 Unc93b1 protein_coding protein_coding MGP_CASTEiJ_T0050152.1 MGP_CASTEiJ_G0023840.1 mouse_genomes_project 19 736046 751655 + MGP_CASTEiJ_P0050152 Unc93b1 protein_coding protein_coding MGP_CASTEiJ_T0050153.1 MGP_CASTEiJ_G0023840.1 mouse_genomes_project 19 736086 738839 + Unc93b1 protein_coding retained_intron MGP_CASTEiJ_T0050154.1 MGP_CASTEiJ_G0023840.1 mouse_genomes_project 19 744758 751656 + Unc93b1 protein_coding retained_intron MGP_CASTEiJ_T0051528.1 MGP_CASTEiJ_G0024307.1 mouse_genomes_project 19 38627542 38737641 - MGP_CASTEiJ_P0051528 Sorbs1 protein_coding protein_coding MGP_CASTEiJ_T0051529.1 MGP_CASTEiJ_G0024307.1 mouse_genomes_project 19 38627542 38737641 - MGP_CASTEiJ_P0051529 Sorbs1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051530.1 MGP_CASTEiJ_G0024307.1 mouse_genomes_project 19 38627542 38737641 - MGP_CASTEiJ_P0051530 Sorbs1 protein_coding protein_coding MGP_CASTEiJ_T0051531.1 MGP_CASTEiJ_G0024307.1 mouse_genomes_project 19 38627542 38737641 - MGP_CASTEiJ_P0051531 Sorbs1 protein_coding protein_coding MGP_CASTEiJ_T0051532.1 MGP_CASTEiJ_G0024307.1 mouse_genomes_project 19 38627542 38737641 - MGP_CASTEiJ_P0051532 Sorbs1 protein_coding protein_coding MGP_CASTEiJ_T0051533.1 MGP_CASTEiJ_G0024307.1 mouse_genomes_project 19 38642043 38737641 - MGP_CASTEiJ_P0051533 Sorbs1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050316.1 MGP_CASTEiJ_G0023888.1 mouse_genomes_project 19 1828314 1840540 - MGP_CASTEiJ_P0050316 Peli3 protein_coding protein_coding MGP_CASTEiJ_T0050317.1 MGP_CASTEiJ_G0023888.1 mouse_genomes_project 19 1829518 1840575 - MGP_CASTEiJ_P0050317 Peli3 protein_coding protein_coding MGP_CASTEiJ_T0050318.1 MGP_CASTEiJ_G0023888.1 mouse_genomes_project 19 1832633 1836281 - Peli3 protein_coding retained_intron MGP_CASTEiJ_T0050319.1 MGP_CASTEiJ_G0023888.1 mouse_genomes_project 19 1832659 1840546 - Peli3 protein_coding processed_transcript MGP_CASTEiJ_T0050320.1 MGP_CASTEiJ_G0023888.1 mouse_genomes_project 19 1832663 1840521 - MGP_CASTEiJ_P0050320 Peli3 protein_coding protein_coding MGP_CASTEiJ_T0050321.1 MGP_CASTEiJ_G0023888.1 mouse_genomes_project 19 1832670 1840515 - Peli3 protein_coding processed_transcript MGP_CASTEiJ_T0050322.1 MGP_CASTEiJ_G0023888.1 mouse_genomes_project 19 1839048 1840494 - Peli3 protein_coding retained_intron MGP_CASTEiJ_T0051751.1 MGP_CASTEiJ_G0024379.1 mouse_genomes_project 19 43713153 43723413 + MGP_CASTEiJ_P0051751 Sfxn3 protein_coding protein_coding MGP_CASTEiJ_T0051752.1 MGP_CASTEiJ_G0024379.1 mouse_genomes_project 19 43713153 43723413 + MGP_CASTEiJ_P0051752 Sfxn3 protein_coding protein_coding MGP_CASTEiJ_T0051753.1 MGP_CASTEiJ_G0024379.1 mouse_genomes_project 19 43713153 43723413 + MGP_CASTEiJ_P0051753 Sfxn3 protein_coding protein_coding MGP_CASTEiJ_T0050188.1 MGP_CASTEiJ_G0023852.1 mouse_genomes_project 19 928132 942079 + MGP_CASTEiJ_P0050188 Pitpnm1 protein_coding protein_coding MGP_CASTEiJ_T0050189.1 MGP_CASTEiJ_G0023852.1 mouse_genomes_project 19 928180 942079 + Pitpnm1 protein_coding retained_intron MGP_CASTEiJ_T0050190.1 MGP_CASTEiJ_G0023852.1 mouse_genomes_project 19 928403 933064 + MGP_CASTEiJ_P0050190 Pitpnm1 protein_coding protein_coding MGP_CASTEiJ_T0050191.1 MGP_CASTEiJ_G0023852.1 mouse_genomes_project 19 928755 942079 + MGP_CASTEiJ_P0050191 Pitpnm1 protein_coding protein_coding MGP_CASTEiJ_T0050192.1 MGP_CASTEiJ_G0023852.1 mouse_genomes_project 19 936317 938021 + Pitpnm1 protein_coding retained_intron MGP_CASTEiJ_T0050193.1 MGP_CASTEiJ_G0023852.1 mouse_genomes_project 19 936865 940334 + Pitpnm1 protein_coding processed_transcript MGP_CASTEiJ_T0050194.1 MGP_CASTEiJ_G0023852.1 mouse_genomes_project 19 937761 938852 + Pitpnm1 protein_coding retained_intron MGP_CASTEiJ_T0050195.1 MGP_CASTEiJ_G0023852.1 mouse_genomes_project 19 938917 940141 + Pitpnm1 protein_coding retained_intron MGP_CASTEiJ_T0050196.1 MGP_CASTEiJ_G0023852.1 mouse_genomes_project 19 939278 940488 + Pitpnm1 protein_coding retained_intron MGP_CASTEiJ_T0050197.1 MGP_CASTEiJ_G0023852.1 mouse_genomes_project 19 940045 941729 + Pitpnm1 protein_coding retained_intron MGP_CASTEiJ_T0050198.1 MGP_CASTEiJ_G0023852.1 mouse_genomes_project 19 940436 942079 + Pitpnm1 protein_coding retained_intron MGP_CASTEiJ_T0051373.1 MGP_CASTEiJ_G0024247.1 mouse_genomes_project 19 31202718 31466449 - MGP_CASTEiJ_P0051373 Rnls protein_coding protein_coding MGP_CASTEiJ_T0051374.1 MGP_CASTEiJ_G0024247.1 mouse_genomes_project 19 31202718 31466419 - MGP_CASTEiJ_P0051374 Rnls protein_coding protein_coding MGP_CASTEiJ_T0051375.1 MGP_CASTEiJ_G0024247.1 mouse_genomes_project 19 31203094 31466226 - MGP_CASTEiJ_P0051375 Rnls protein_coding unknown_likely_coding MGP_CASTEiJ_T0050755.1 MGP_CASTEiJ_G0024005.1 mouse_genomes_project 19 4736030 4762182 - MGP_CASTEiJ_P0050755 Slc22a26 protein_coding protein_coding MGP_CASTEiJ_T0050756.1 MGP_CASTEiJ_G0024005.1 mouse_genomes_project 19 4736974 4762271 - MGP_CASTEiJ_P0050756 Slc22a26 protein_coding protein_coding MGP_CASTEiJ_T0050730.1 MGP_CASTEiJ_G0023998.1 mouse_genomes_project 19 4368425 4377144 + MGP_CASTEiJ_P0050730 2700081O15Rik protein_coding protein_coding MGP_CASTEiJ_T0050731.1 MGP_CASTEiJ_G0023998.1 mouse_genomes_project 19 4369514 4372336 + 2700081O15Rik protein_coding retained_intron MGP_CASTEiJ_T0050732.1 MGP_CASTEiJ_G0023998.1 mouse_genomes_project 19 4371317 4374586 + MGP_CASTEiJ_P0050732 2700081O15Rik protein_coding protein_coding MGP_CASTEiJ_T0050733.1 MGP_CASTEiJ_G0023998.1 mouse_genomes_project 19 4371636 4373920 + MGP_CASTEiJ_P0050733 2700081O15Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050734.1 MGP_CASTEiJ_G0023998.1 mouse_genomes_project 19 4371646 4373572 + MGP_CASTEiJ_P0050734 2700081O15Rik protein_coding protein_coding MGP_CASTEiJ_T0050735.1 MGP_CASTEiJ_G0023998.1 mouse_genomes_project 19 4372274 4376780 + 2700081O15Rik protein_coding retained_intron MGP_CASTEiJ_T0050522.1 MGP_CASTEiJ_G0023956.1 mouse_genomes_project 19 3100442 3109169 - MGP_CASTEiJ_P0050522 Snx15 protein_coding protein_coding MGP_CASTEiJ_T0050523.1 MGP_CASTEiJ_G0023956.1 mouse_genomes_project 19 3100900 3109012 - MGP_CASTEiJ_P0050523 Snx15 protein_coding protein_coding MGP_CASTEiJ_T0050524.1 MGP_CASTEiJ_G0023956.1 mouse_genomes_project 19 3101679 3102680 - Snx15 protein_coding retained_intron MGP_CASTEiJ_T0050525.1 MGP_CASTEiJ_G0023956.1 mouse_genomes_project 19 3101679 3108672 - Snx15 protein_coding processed_transcript MGP_CASTEiJ_T0050526.1 MGP_CASTEiJ_G0023956.1 mouse_genomes_project 19 3102539 3103333 - Snx15 protein_coding processed_transcript MGP_CASTEiJ_T0050527.1 MGP_CASTEiJ_G0023956.1 mouse_genomes_project 19 3102942 3108998 - Snx15 protein_coding retained_intron MGP_CASTEiJ_T0050528.1 MGP_CASTEiJ_G0023956.1 mouse_genomes_project 19 3102964 3109030 - MGP_CASTEiJ_P0050528 Snx15 protein_coding protein_coding MGP_CASTEiJ_T0051741.1 MGP_CASTEiJ_G0024373.1 mouse_genomes_project 19 43581883 43641095 + MGP_CASTEiJ_P0051741 Fam178a protein_coding protein_coding MGP_CASTEiJ_T0051842.1 MGP_CASTEiJ_G0024401.1 mouse_genomes_project 19 45129594 45131863 + MGP_CASTEiJ_P0051842 Fbxl15 protein_coding protein_coding MGP_CASTEiJ_T0051843.1 MGP_CASTEiJ_G0024401.1 mouse_genomes_project 19 45129597 45131862 + MGP_CASTEiJ_P0051843 Fbxl15 protein_coding protein_coding MGP_CASTEiJ_T0010006.1 MGP_CASTEiJ_G0008194.1 mouse_genomes_project 19 3024673 3024732 + Mir6988 miRNA miRNA MGP_CASTEiJ_T0050207.1 MGP_CASTEiJ_G0023856.1 mouse_genomes_project 19 980350 982237 + MGP_CASTEiJ_P0050207 protein_coding protein_coding MGP_CASTEiJ_T0050208.1 MGP_CASTEiJ_G0023856.1 mouse_genomes_project 19 980352 986788 + MGP_CASTEiJ_P0050208 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050209.1 MGP_CASTEiJ_G0023856.1 mouse_genomes_project 19 980359 981287 + protein_coding retained_intron MGP_CASTEiJ_T0050210.1 MGP_CASTEiJ_G0023856.1 mouse_genomes_project 19 980363 981367 + protein_coding retained_intron MGP_CASTEiJ_T0050211.1 MGP_CASTEiJ_G0023856.1 mouse_genomes_project 19 980392 983232 + protein_coding processed_transcript MGP_CASTEiJ_T0050212.1 MGP_CASTEiJ_G0023856.1 mouse_genomes_project 19 980395 981986 + protein_coding retained_intron MGP_CASTEiJ_T0050213.1 MGP_CASTEiJ_G0023856.1 mouse_genomes_project 19 982275 985557 + protein_coding retained_intron MGP_CASTEiJ_T0050214.1 MGP_CASTEiJ_G0023856.1 mouse_genomes_project 19 983102 986193 + protein_coding retained_intron MGP_CASTEiJ_T0050215.1 MGP_CASTEiJ_G0023856.1 mouse_genomes_project 19 983312 986410 + protein_coding retained_intron MGP_CASTEiJ_T0051352.1 MGP_CASTEiJ_G0024241.1 mouse_genomes_project 19 29968617 30059573 - MGP_CASTEiJ_P0051352 Asah2 protein_coding protein_coding MGP_CASTEiJ_T0050405.1 MGP_CASTEiJ_G0023921.1 mouse_genomes_project 19 2485304 2496778 - MGP_CASTEiJ_P0050405 Ovol1 protein_coding protein_coding MGP_CASTEiJ_T0101748.1 MGP_CASTEiJ_G0038549.1 mouse_genomes_project 19 37584888 37618381 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101749.1 MGP_CASTEiJ_G0038549.1 mouse_genomes_project 19 37584918 37618338 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0101750.1 MGP_CASTEiJ_G0038549.1 mouse_genomes_project 19 37615100 37618629 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0051723.1 MGP_CASTEiJ_G0024368.1 mouse_genomes_project 19 43134444 43166262 - MGP_CASTEiJ_P0051723 Sec31b protein_coding protein_coding MGP_CASTEiJ_T0051724.1 MGP_CASTEiJ_G0024368.1 mouse_genomes_project 19 43134682 43166245 - MGP_CASTEiJ_P0051724 Sec31b protein_coding protein_coding MGP_CASTEiJ_T0051725.1 MGP_CASTEiJ_G0024368.1 mouse_genomes_project 19 43135118 43138055 - MGP_CASTEiJ_P0051725 Sec31b protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051756.1 MGP_CASTEiJ_G0024381.1 mouse_genomes_project 19 43822485 43828749 + MGP_CASTEiJ_P0051756 Tlx1 protein_coding protein_coding MGP_CASTEiJ_T0051757.1 MGP_CASTEiJ_G0024381.1 mouse_genomes_project 19 43823274 43828215 + MGP_CASTEiJ_P0051757 Tlx1 protein_coding protein_coding MGP_CASTEiJ_T0052106.1 MGP_CASTEiJ_G0024483.1 mouse_genomes_project 19 58968881 59004804 + MGP_CASTEiJ_P0052106 Slc18a2 protein_coding protein_coding MGP_CASTEiJ_T0051115.1 MGP_CASTEiJ_G0024159.1 mouse_genomes_project 19 12918755 12946835 - MGP_CASTEiJ_P0051115 Cep78 protein_coding protein_coding MGP_CASTEiJ_T0051959.1 MGP_CASTEiJ_G0024442.1 mouse_genomes_project 19 52651642 52664234 - MGP_CASTEiJ_P0051959 Smndc1 protein_coding protein_coding MGP_CASTEiJ_T0099600.1 MGP_CASTEiJ_G0036513.1 mouse_genomes_project 19 20721638 20721745 + Gm24263 snRNA snRNA MGP_CASTEiJ_T0050954.1 MGP_CASTEiJ_G0024069.1 mouse_genomes_project 19 7577817 7579830 - MGP_CASTEiJ_P0050954 Zp1 protein_coding protein_coding MGP_CASTEiJ_T0050955.1 MGP_CASTEiJ_G0024069.1 mouse_genomes_project 19 7577819 7584156 - MGP_CASTEiJ_P0050955 Zp1 protein_coding protein_coding MGP_CASTEiJ_T0010037.1 MGP_CASTEiJ_G0008225.1 mouse_genomes_project 19 45143774 45143883 + Mir146b miRNA miRNA MGP_CASTEiJ_T0051394.1 MGP_CASTEiJ_G0024258.1 mouse_genomes_project 19 32267975 32284356 - MGP_CASTEiJ_P0051394 Acta2 protein_coding protein_coding MGP_CASTEiJ_T0051467.1 MGP_CASTEiJ_G0024284.1 mouse_genomes_project 19 36030460 36034205 + MGP_CASTEiJ_P0051467 Cyp26a1 protein_coding protein_coding MGP_CASTEiJ_T0050695.1 MGP_CASTEiJ_G0023990.1 mouse_genomes_project 19 3981665 4132626 + MGP_CASTEiJ_P0050695 Macrod1 protein_coding protein_coding MGP_CASTEiJ_T0050696.1 MGP_CASTEiJ_G0023990.1 mouse_genomes_project 19 3981913 3997787 + MGP_CASTEiJ_P0050696 Macrod1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050605.1 MGP_CASTEiJ_G0023968.1 mouse_genomes_project 19 3393980 3407660 + MGP_CASTEiJ_P0050605 Pygm protein_coding protein_coding MGP_CASTEiJ_T0050606.1 MGP_CASTEiJ_G0023968.1 mouse_genomes_project 19 3393996 3407649 + MGP_CASTEiJ_P0050606 Pygm protein_coding protein_coding MGP_CASTEiJ_T0050607.1 MGP_CASTEiJ_G0023968.1 mouse_genomes_project 19 3402166 3403648 + Pygm protein_coding retained_intron MGP_CASTEiJ_T0050608.1 MGP_CASTEiJ_G0023968.1 mouse_genomes_project 19 3406695 3407492 + Pygm protein_coding retained_intron MGP_CASTEiJ_T0050681.1 MGP_CASTEiJ_G0023982.1 mouse_genomes_project 19 3891748 3894028 + MGP_CASTEiJ_P0050681 Ppp1r14b protein_coding protein_coding MGP_CASTEiJ_T0050682.1 MGP_CASTEiJ_G0023982.1 mouse_genomes_project 19 3891883 3893963 + MGP_CASTEiJ_P0050682 Ppp1r14b protein_coding unknown_likely_coding MGP_CASTEiJ_T0099599.1 MGP_CASTEiJ_G0036512.1 mouse_genomes_project 19 15891973 15892137 + Gm23238 snRNA snRNA MGP_CASTEiJ_T0051377.1 MGP_CASTEiJ_G0024249.1 mouse_genomes_project 19 31545718 31558640 - MGP_CASTEiJ_P0051377 Lipo5 protein_coding protein_coding MGP_CASTEiJ_T0003728.1 MGP_CASTEiJ_G0003349.1 mouse_genomes_project 19 3541607 3542918 - Gm14964 antisense antisense MGP_CASTEiJ_T0003729.1 MGP_CASTEiJ_G0003349.1 mouse_genomes_project 19 3541685 3542695 - Gm14964 antisense antisense MGP_CASTEiJ_T0052111.1 MGP_CASTEiJ_G0024486.1 mouse_genomes_project 19 59634702 59678724 - MGP_CASTEiJ_P0052111 Rab11fip2 protein_coding protein_coding MGP_CASTEiJ_T0052112.1 MGP_CASTEiJ_G0024486.1 mouse_genomes_project 19 59635513 59678435 - MGP_CASTEiJ_P0052112 Rab11fip2 protein_coding protein_coding MGP_CASTEiJ_T0052113.1 MGP_CASTEiJ_G0024486.1 mouse_genomes_project 19 59638733 59678071 - MGP_CASTEiJ_P0052113 Rab11fip2 protein_coding protein_coding MGP_CASTEiJ_T0052036.1 MGP_CASTEiJ_G0024464.1 mouse_genomes_project 19 56317520 56351654 - MGP_CASTEiJ_P0052036 Ccdc186 protein_coding protein_coding MGP_CASTEiJ_T0052037.1 MGP_CASTEiJ_G0024464.1 mouse_genomes_project 19 56320602 56325190 - MGP_CASTEiJ_P0052037 Ccdc186 protein_coding protein_coding MGP_CASTEiJ_T0052038.1 MGP_CASTEiJ_G0024464.1 mouse_genomes_project 19 56321038 56343257 - MGP_CASTEiJ_P0052038 Ccdc186 protein_coding protein_coding MGP_CASTEiJ_T0052039.1 MGP_CASTEiJ_G0024464.1 mouse_genomes_project 19 56323039 56327135 - Ccdc186 protein_coding retained_intron MGP_CASTEiJ_T0052040.1 MGP_CASTEiJ_G0024464.1 mouse_genomes_project 19 56326974 56330517 - Ccdc186 protein_coding retained_intron MGP_CASTEiJ_T0052041.1 MGP_CASTEiJ_G0024464.1 mouse_genomes_project 19 56329606 56351654 - Ccdc186 protein_coding retained_intron MGP_CASTEiJ_T0051763.1 MGP_CASTEiJ_G0024385.1 mouse_genomes_project 19 44266165 44287484 + MGP_CASTEiJ_P0051763 Gm17018 protein_coding protein_coding MGP_CASTEiJ_T0051765.1 MGP_CASTEiJ_G0024385.1 mouse_genomes_project 19 44287481 44288967 + Gm17018 protein_coding antisense MGP_CASTEiJ_T0050708.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4213737 4279891 - MGP_CASTEiJ_P0050708 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050709.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4215077 4279871 - MGP_CASTEiJ_P0050709 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050710.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4215103 4233704 - MGP_CASTEiJ_P0050710 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050711.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4215103 4279506 - MGP_CASTEiJ_P0050711 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050712.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4215103 4279660 - MGP_CASTEiJ_P0050712 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050713.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4215103 4279265 - MGP_CASTEiJ_P0050713 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050714.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4215192 4279876 - MGP_CASTEiJ_P0050714 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050715.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4215192 4221395 - MGP_CASTEiJ_P0050715 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050716.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4215195 4216437 - Mark2 protein_coding retained_intron MGP_CASTEiJ_T0050717.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4215432 4279294 - MGP_CASTEiJ_P0050717 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050718.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4215622 4221410 - MGP_CASTEiJ_P0050718 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050719.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4215787 4221523 - MGP_CASTEiJ_P0050719 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050720.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4216843 4221862 - MGP_CASTEiJ_P0050720 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050721.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4217498 4220285 - MGP_CASTEiJ_P0050721 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050722.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4219374 4221455 - MGP_CASTEiJ_P0050722 Mark2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050723.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4221481 4223123 - Mark2 protein_coding retained_intron MGP_CASTEiJ_T0050724.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4223101 4225692 - Mark2 protein_coding retained_intron MGP_CASTEiJ_T0050725.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4224152 4279932 - MGP_CASTEiJ_P0050725 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050726.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4225665 4279676 - MGP_CASTEiJ_P0050726 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050727.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4228622 4279714 - MGP_CASTEiJ_P0050727 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050728.1 MGP_CASTEiJ_G0023996.1 mouse_genomes_project 19 4228951 4279884 - MGP_CASTEiJ_P0050728 Mark2 protein_coding protein_coding MGP_CASTEiJ_T0050817.1 MGP_CASTEiJ_G0024018.1 mouse_genomes_project 19 5583331 5593607 - MGP_CASTEiJ_P0050817 Ttc9c protein_coding protein_coding MGP_CASTEiJ_T0050818.1 MGP_CASTEiJ_G0024018.1 mouse_genomes_project 19 5585400 5593198 - MGP_CASTEiJ_P0050818 Ttc9c protein_coding protein_coding MGP_CASTEiJ_T0050819.1 MGP_CASTEiJ_G0024018.1 mouse_genomes_project 19 5585561 5593568 - MGP_CASTEiJ_P0050819 Ttc9c protein_coding protein_coding MGP_CASTEiJ_T0050820.1 MGP_CASTEiJ_G0024018.1 mouse_genomes_project 19 5592571 5593506 - Ttc9c protein_coding retained_intron MGP_CASTEiJ_T0052081.1 MGP_CASTEiJ_G0024472.1 mouse_genomes_project 19 57868100 58099838 - MGP_CASTEiJ_P0052081 Gfra1 protein_coding protein_coding MGP_CASTEiJ_T0052082.1 MGP_CASTEiJ_G0024472.1 mouse_genomes_project 19 57868108 58099032 - MGP_CASTEiJ_P0052082 Gfra1 protein_coding protein_coding MGP_CASTEiJ_T0052083.1 MGP_CASTEiJ_G0024472.1 mouse_genomes_project 19 57869188 58098906 - MGP_CASTEiJ_P0052083 Gfra1 protein_coding protein_coding MGP_CASTEiJ_T0052084.1 MGP_CASTEiJ_G0024472.1 mouse_genomes_project 19 57870654 58099799 - MGP_CASTEiJ_P0052084 Gfra1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052085.1 MGP_CASTEiJ_G0024472.1 mouse_genomes_project 19 57870654 58099741 - MGP_CASTEiJ_P0052085 Gfra1 protein_coding protein_coding MGP_CASTEiJ_T0052086.1 MGP_CASTEiJ_G0024472.1 mouse_genomes_project 19 58075471 58100322 - MGP_CASTEiJ_P0052086 Gfra1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052087.1 MGP_CASTEiJ_G0024472.1 mouse_genomes_project 19 58097774 58099446 - MGP_CASTEiJ_P0052087 Gfra1 protein_coding protein_coding MGP_CASTEiJ_T0052088.1 MGP_CASTEiJ_G0024472.1 mouse_genomes_project 19 58097791 58100349 - MGP_CASTEiJ_P0052088 Gfra1 protein_coding protein_coding MGP_CASTEiJ_T0052089.1 MGP_CASTEiJ_G0024472.1 mouse_genomes_project 19 58097860 58099060 - MGP_CASTEiJ_P0052089 Gfra1 protein_coding protein_coding MGP_CASTEiJ_T0052090.1 MGP_CASTEiJ_G0024472.1 mouse_genomes_project 19 58098763 58099601 - MGP_CASTEiJ_P0052090 Gfra1 protein_coding protein_coding MGP_CASTEiJ_T0003753.1 MGP_CASTEiJ_G0003367.1 mouse_genomes_project 19 53143882 53149632 - Gm16299 antisense antisense MGP_CASTEiJ_T0051685.1 MGP_CASTEiJ_G0024355.1 mouse_genomes_project 19 42388309 42496210 - MGP_CASTEiJ_P0051685 Dnmbp protein_coding unknown_likely_coding MGP_CASTEiJ_T0051686.1 MGP_CASTEiJ_G0024355.1 mouse_genomes_project 19 42388309 42432286 - MGP_CASTEiJ_P0051686 Dnmbp protein_coding unknown_likely_coding MGP_CASTEiJ_T0051687.1 MGP_CASTEiJ_G0024355.1 mouse_genomes_project 19 42389459 42456488 - MGP_CASTEiJ_P0051687 Dnmbp protein_coding protein_coding MGP_CASTEiJ_T0050356.1 MGP_CASTEiJ_G0023908.1 mouse_genomes_project 19 2307514 2319720 - MGP_CASTEiJ_P0050356 Sart1 protein_coding protein_coding MGP_CASTEiJ_T0050357.1 MGP_CASTEiJ_G0023908.1 mouse_genomes_project 19 2310057 2319689 - MGP_CASTEiJ_P0050357 Sart1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050683.1 MGP_CASTEiJ_G0023983.1 mouse_genomes_project 19 3894282 3897152 - MGP_CASTEiJ_P0050683 Fkbp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051179.1 MGP_CASTEiJ_G0024184.1 mouse_genomes_project 19 19475620 20368830 + MGP_CASTEiJ_P0051179 Trpm3 protein_coding protein_coding MGP_CASTEiJ_T0051180.1 MGP_CASTEiJ_G0024184.1 mouse_genomes_project 19 19475620 20368830 + MGP_CASTEiJ_P0051180 Trpm3 protein_coding protein_coding MGP_CASTEiJ_T0051181.1 MGP_CASTEiJ_G0024184.1 mouse_genomes_project 19 19475620 20368830 + MGP_CASTEiJ_P0051181 Trpm3 protein_coding protein_coding MGP_CASTEiJ_T0051182.1 MGP_CASTEiJ_G0024184.1 mouse_genomes_project 19 19801841 20368832 + MGP_CASTEiJ_P0051182 Trpm3 protein_coding protein_coding MGP_CASTEiJ_T0051183.1 MGP_CASTEiJ_G0024184.1 mouse_genomes_project 19 20053856 20303553 + MGP_CASTEiJ_P0051183 Trpm3 protein_coding protein_coding MGP_CASTEiJ_T0051184.1 MGP_CASTEiJ_G0024184.1 mouse_genomes_project 19 20053856 20139148 + MGP_CASTEiJ_P0051184 Trpm3 protein_coding protein_coding MGP_CASTEiJ_T0100829.1 MGP_CASTEiJ_G0037742.1 mouse_genomes_project 19 8295080 8295130 - Gm24599 snoRNA snoRNA MGP_CASTEiJ_T0098561.1 MGP_CASTEiJ_G0035492.1 mouse_genomes_project 19 33734950 33735081 - Gm22853 rRNA rRNA MGP_CASTEiJ_T0011154.1 MGP_CASTEiJ_G0009342.1 mouse_genomes_project 19 40158197 40158434 + Gm22601 misc_RNA misc_RNA MGP_CASTEiJ_T0051621.1 MGP_CASTEiJ_G0024336.1 mouse_genomes_project 19 40571838 40577612 - MGP_CASTEiJ_P0051621 Avpi1 protein_coding protein_coding MGP_CASTEiJ_T0051622.1 MGP_CASTEiJ_G0024336.1 mouse_genomes_project 19 40573326 40577542 - MGP_CASTEiJ_P0051622 Avpi1 protein_coding protein_coding MGP_CASTEiJ_T0050418.1 MGP_CASTEiJ_G0023927.1 mouse_genomes_project 19 2605999 2632105 - MGP_CASTEiJ_P0050418 Pcnx3 protein_coding protein_coding MGP_CASTEiJ_T0050419.1 MGP_CASTEiJ_G0023927.1 mouse_genomes_project 19 2606002 2615230 - Pcnx3 protein_coding retained_intron MGP_CASTEiJ_T0050420.1 MGP_CASTEiJ_G0023927.1 mouse_genomes_project 19 2606004 2631346 - MGP_CASTEiJ_P0050420 Pcnx3 protein_coding protein_coding MGP_CASTEiJ_T0050421.1 MGP_CASTEiJ_G0023927.1 mouse_genomes_project 19 2606599 2607558 - Pcnx3 protein_coding retained_intron MGP_CASTEiJ_T0050422.1 MGP_CASTEiJ_G0023927.1 mouse_genomes_project 19 2606775 2608342 - MGP_CASTEiJ_P0050422 Pcnx3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050423.1 MGP_CASTEiJ_G0023927.1 mouse_genomes_project 19 2607350 2607886 - Pcnx3 protein_coding retained_intron MGP_CASTEiJ_T0050424.1 MGP_CASTEiJ_G0023927.1 mouse_genomes_project 19 2614573 2627838 - MGP_CASTEiJ_P0050424 Pcnx3 protein_coding protein_coding MGP_CASTEiJ_T0050425.1 MGP_CASTEiJ_G0023927.1 mouse_genomes_project 19 2616063 2622783 - MGP_CASTEiJ_P0050425 Pcnx3 protein_coding protein_coding MGP_CASTEiJ_T0050426.1 MGP_CASTEiJ_G0023927.1 mouse_genomes_project 19 2622172 2626512 - MGP_CASTEiJ_P0050426 Pcnx3 protein_coding protein_coding MGP_CASTEiJ_T0050427.1 MGP_CASTEiJ_G0023927.1 mouse_genomes_project 19 2622608 2627042 - MGP_CASTEiJ_P0050427 Pcnx3 protein_coding protein_coding MGP_CASTEiJ_T0050428.1 MGP_CASTEiJ_G0023927.1 mouse_genomes_project 19 2623138 2624727 - Pcnx3 protein_coding retained_intron MGP_CASTEiJ_T0050429.1 MGP_CASTEiJ_G0023927.1 mouse_genomes_project 19 2626909 2631892 - Pcnx3 protein_coding retained_intron MGP_CASTEiJ_T0050372.1 MGP_CASTEiJ_G0023912.1 mouse_genomes_project 19 2377208 2385457 + MGP_CASTEiJ_P0050372 Fosl1 protein_coding protein_coding MGP_CASTEiJ_T0098562.1 MGP_CASTEiJ_G0035493.1 mouse_genomes_project 19 35448946 35449052 + Gm23918 rRNA rRNA MGP_CASTEiJ_T0051023.1 MGP_CASTEiJ_G0024094.1 mouse_genomes_project 19 8334870 8348585 - MGP_CASTEiJ_P0051023 Oosp2 protein_coding protein_coding MGP_CASTEiJ_T0051024.1 MGP_CASTEiJ_G0024094.1 mouse_genomes_project 19 8334871 8348628 - MGP_CASTEiJ_P0051024 Oosp2 protein_coding protein_coding MGP_CASTEiJ_T0012971.1 MGP_CASTEiJ_G0011134.1 mouse_genomes_project 19 8089566 8090683 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0051691.1 MGP_CASTEiJ_G0024358.1 mouse_genomes_project 19 42605162 42640711 - MGP_CASTEiJ_P0051691 Erlin1 protein_coding protein_coding MGP_CASTEiJ_T0051692.1 MGP_CASTEiJ_G0024358.1 mouse_genomes_project 19 42605162 42640970 - MGP_CASTEiJ_P0051692 Erlin1 protein_coding protein_coding MGP_CASTEiJ_T0051693.1 MGP_CASTEiJ_G0024358.1 mouse_genomes_project 19 42605162 42640960 - MGP_CASTEiJ_P0051693 Erlin1 protein_coding protein_coding MGP_CASTEiJ_T0051694.1 MGP_CASTEiJ_G0024358.1 mouse_genomes_project 19 42627410 42640941 - MGP_CASTEiJ_P0051694 Erlin1 protein_coding protein_coding MGP_CASTEiJ_T0051695.1 MGP_CASTEiJ_G0024358.1 mouse_genomes_project 19 42630298 42640584 - MGP_CASTEiJ_P0051695 Erlin1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051696.1 MGP_CASTEiJ_G0024358.1 mouse_genomes_project 19 42630300 42638873 - MGP_CASTEiJ_P0051696 Erlin1 protein_coding protein_coding MGP_CASTEiJ_T0051697.1 MGP_CASTEiJ_G0024358.1 mouse_genomes_project 19 42637263 42640929 - Erlin1 protein_coding retained_intron MGP_CASTEiJ_T0051698.1 MGP_CASTEiJ_G0024358.1 mouse_genomes_project 19 42638662 42640881 - Erlin1 protein_coding retained_intron MGP_CASTEiJ_T0051699.1 MGP_CASTEiJ_G0024358.1 mouse_genomes_project 19 42640504 42640875 - MGP_CASTEiJ_P0051699 Erlin1 protein_coding protein_coding MGP_CASTEiJ_T0051471.1 MGP_CASTEiJ_G0024286.1 mouse_genomes_project 19 36411642 36432214 + MGP_CASTEiJ_P0051471 Cep55 protein_coding protein_coding MGP_CASTEiJ_T0051472.1 MGP_CASTEiJ_G0024286.1 mouse_genomes_project 19 36411657 36431285 + MGP_CASTEiJ_P0051472 Cep55 protein_coding protein_coding MGP_CASTEiJ_T0051473.1 MGP_CASTEiJ_G0024286.1 mouse_genomes_project 19 36411659 36432214 + MGP_CASTEiJ_P0051473 Cep55 protein_coding protein_coding MGP_CASTEiJ_T0051329.1 MGP_CASTEiJ_G0024233.1 mouse_genomes_project 19 27899121 27927228 + Uhrf2 protein_coding retained_intron MGP_CASTEiJ_T0051330.1 MGP_CASTEiJ_G0024233.1 mouse_genomes_project 19 27899121 27949873 + Uhrf2 protein_coding retained_intron MGP_CASTEiJ_T0051331.1 MGP_CASTEiJ_G0024233.1 mouse_genomes_project 19 27899121 27964131 + MGP_CASTEiJ_P0051331 Uhrf2 protein_coding protein_coding MGP_CASTEiJ_T0051332.1 MGP_CASTEiJ_G0024233.1 mouse_genomes_project 19 27899197 27925574 + MGP_CASTEiJ_P0051332 Uhrf2 protein_coding protein_coding MGP_CASTEiJ_T0051333.1 MGP_CASTEiJ_G0024233.1 mouse_genomes_project 19 27899285 27959953 + MGP_CASTEiJ_P0051333 Uhrf2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051334.1 MGP_CASTEiJ_G0024233.1 mouse_genomes_project 19 27942198 27943816 + Uhrf2 protein_coding retained_intron MGP_CASTEiJ_T0051335.1 MGP_CASTEiJ_G0024233.1 mouse_genomes_project 19 27946852 27948599 + Uhrf2 protein_coding retained_intron MGP_CASTEiJ_T0051336.1 MGP_CASTEiJ_G0024233.1 mouse_genomes_project 19 27955269 27957755 + Uhrf2 protein_coding retained_intron MGP_CASTEiJ_T0051337.1 MGP_CASTEiJ_G0024233.1 mouse_genomes_project 19 27959512 27964131 + Uhrf2 protein_coding retained_intron MGP_CASTEiJ_T0051338.1 MGP_CASTEiJ_G0024233.1 mouse_genomes_project 19 27962391 27963346 + Uhrf2 protein_coding retained_intron MGP_CASTEiJ_T0099595.1 MGP_CASTEiJ_G0036508.1 mouse_genomes_project 19 9424800 9424907 + Gm24521 snRNA snRNA MGP_CASTEiJ_T0051860.1 MGP_CASTEiJ_G0024408.1 mouse_genomes_project 19 45409777 45439444 + MGP_CASTEiJ_P0051860 Sfxn2 protein_coding protein_coding MGP_CASTEiJ_T0010027.1 MGP_CASTEiJ_G0008215.1 mouse_genomes_project 19 32826619 32826723 + Gm27476 miRNA miRNA MGP_CASTEiJ_T0050199.1 MGP_CASTEiJ_G0023853.1 mouse_genomes_project 19 942558 955940 - MGP_CASTEiJ_P0050199 Aip protein_coding protein_coding MGP_CASTEiJ_T0050200.1 MGP_CASTEiJ_G0023853.1 mouse_genomes_project 19 942576 950535 - MGP_CASTEiJ_P0050200 Aip protein_coding protein_coding MGP_CASTEiJ_T0050201.1 MGP_CASTEiJ_G0023853.1 mouse_genomes_project 19 943564 955930 - MGP_CASTEiJ_P0050201 Aip protein_coding protein_coding MGP_CASTEiJ_T0050202.1 MGP_CASTEiJ_G0023853.1 mouse_genomes_project 19 947203 953525 - Aip protein_coding processed_transcript MGP_CASTEiJ_T0050203.1 MGP_CASTEiJ_G0023853.1 mouse_genomes_project 19 949891 955872 - Aip protein_coding retained_intron MGP_CASTEiJ_T0050177.1 MGP_CASTEiJ_G0023849.1 mouse_genomes_project 19 886025 887996 - MGP_CASTEiJ_P0050177 BC021614 protein_coding protein_coding MGP_CASTEiJ_T0050178.1 MGP_CASTEiJ_G0023849.1 mouse_genomes_project 19 886026 887845 - MGP_CASTEiJ_P0050178 BC021614 protein_coding protein_coding MGP_CASTEiJ_T0051969.1 MGP_CASTEiJ_G0024446.1 mouse_genomes_project 19 53215207 53254131 + MGP_CASTEiJ_P0051969 Pdcd4 protein_coding protein_coding MGP_CASTEiJ_T0051970.1 MGP_CASTEiJ_G0024446.1 mouse_genomes_project 19 53226317 53254131 + MGP_CASTEiJ_P0051970 Pdcd4 protein_coding protein_coding MGP_CASTEiJ_T0051971.1 MGP_CASTEiJ_G0024446.1 mouse_genomes_project 19 53226317 53254131 + MGP_CASTEiJ_P0051971 Pdcd4 protein_coding protein_coding MGP_CASTEiJ_T0050742.1 MGP_CASTEiJ_G0024001.1 mouse_genomes_project 19 4522997 4554427 + MGP_CASTEiJ_P0050742 Pla2g16 protein_coding protein_coding MGP_CASTEiJ_T0050743.1 MGP_CASTEiJ_G0024001.1 mouse_genomes_project 19 4522997 4547677 + MGP_CASTEiJ_P0050743 Pla2g16 protein_coding protein_coding MGP_CASTEiJ_T0050744.1 MGP_CASTEiJ_G0024001.1 mouse_genomes_project 19 4523015 4545095 + MGP_CASTEiJ_P0050744 Pla2g16 protein_coding protein_coding MGP_CASTEiJ_T0050745.1 MGP_CASTEiJ_G0024001.1 mouse_genomes_project 19 4523023 4552593 + MGP_CASTEiJ_P0050745 Pla2g16 protein_coding protein_coding MGP_CASTEiJ_T0010019.1 MGP_CASTEiJ_G0008207.1 mouse_genomes_project 19 8642650 8642723 + Mir6994 miRNA miRNA MGP_CASTEiJ_T0051668.1 MGP_CASTEiJ_G0024351.1 mouse_genomes_project 19 42217616 42264424 + MGP_CASTEiJ_P0051668 Entpd7 protein_coding protein_coding MGP_CASTEiJ_T0051669.1 MGP_CASTEiJ_G0024351.1 mouse_genomes_project 19 42217753 42220707 + Entpd7 protein_coding retained_intron MGP_CASTEiJ_T0051670.1 MGP_CASTEiJ_G0024351.1 mouse_genomes_project 19 42217784 42253307 + Entpd7 protein_coding retained_intron MGP_CASTEiJ_T0051671.1 MGP_CASTEiJ_G0024351.1 mouse_genomes_project 19 42239637 42246003 + Entpd7 protein_coding retained_intron MGP_CASTEiJ_T0051672.1 MGP_CASTEiJ_G0024351.1 mouse_genomes_project 19 42257098 42258867 + Entpd7 protein_coding retained_intron MGP_CASTEiJ_T0051985.1 MGP_CASTEiJ_G0024453.1 mouse_genomes_project 19 54674269 54721231 + MGP_CASTEiJ_P0051985 Acsl5 protein_coding protein_coding MGP_CASTEiJ_T0051867.1 MGP_CASTEiJ_G0024410.1 mouse_genomes_project 19 45517878 45523746 - MGP_CASTEiJ_P0051867 Cyp17a1 protein_coding protein_coding MGP_CASTEiJ_T0051868.1 MGP_CASTEiJ_G0024410.1 mouse_genomes_project 19 45518800 45520227 - Cyp17a1 protein_coding retained_intron MGP_CASTEiJ_T0051869.1 MGP_CASTEiJ_G0024410.1 mouse_genomes_project 19 45521439 45522029 - Cyp17a1 protein_coding retained_intron MGP_CASTEiJ_T0050255.1 MGP_CASTEiJ_G0023868.1 mouse_genomes_project 19 1159499 1250185 - MGP_CASTEiJ_P0050255 Kdm2a protein_coding protein_coding MGP_CASTEiJ_T0050256.1 MGP_CASTEiJ_G0023868.1 mouse_genomes_project 19 1161249 1248974 - MGP_CASTEiJ_P0050256 Kdm2a protein_coding protein_coding MGP_CASTEiJ_T0050257.1 MGP_CASTEiJ_G0023868.1 mouse_genomes_project 19 1166169 1170634 - MGP_CASTEiJ_P0050257 Kdm2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050258.1 MGP_CASTEiJ_G0023868.1 mouse_genomes_project 19 1167099 1170889 - Kdm2a protein_coding retained_intron MGP_CASTEiJ_T0050259.1 MGP_CASTEiJ_G0023868.1 mouse_genomes_project 19 1172996 1182094 - MGP_CASTEiJ_P0050259 Kdm2a protein_coding protein_coding MGP_CASTEiJ_T0050260.1 MGP_CASTEiJ_G0023868.1 mouse_genomes_project 19 1177268 1182012 - MGP_CASTEiJ_P0050260 Kdm2a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050261.1 MGP_CASTEiJ_G0023868.1 mouse_genomes_project 19 1190425 1248977 - MGP_CASTEiJ_P0050261 Kdm2a protein_coding protein_coding MGP_CASTEiJ_T0050262.1 MGP_CASTEiJ_G0023868.1 mouse_genomes_project 19 1197038 1248973 - Kdm2a protein_coding retained_intron MGP_CASTEiJ_T0050263.1 MGP_CASTEiJ_G0023868.1 mouse_genomes_project 19 1199030 1212255 - MGP_CASTEiJ_P0050263 Kdm2a protein_coding protein_coding MGP_CASTEiJ_T0050264.1 MGP_CASTEiJ_G0023868.1 mouse_genomes_project 19 1199443 1248965 - Kdm2a protein_coding retained_intron MGP_CASTEiJ_T0050265.1 MGP_CASTEiJ_G0023868.1 mouse_genomes_project 19 1240791 1248974 - MGP_CASTEiJ_P0050265 Kdm2a protein_coding protein_coding MGP_CASTEiJ_T0050266.1 MGP_CASTEiJ_G0023868.1 mouse_genomes_project 19 1244325 1248992 - Kdm2a protein_coding retained_intron MGP_CASTEiJ_T0051481.1 MGP_CASTEiJ_G0024291.1 mouse_genomes_project 19 36641543 36695610 + MGP_CASTEiJ_P0051481 Lgi1 protein_coding protein_coding MGP_CASTEiJ_T0051482.1 MGP_CASTEiJ_G0024291.1 mouse_genomes_project 19 36641574 36686574 + MGP_CASTEiJ_P0051482 Lgi1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051483.1 MGP_CASTEiJ_G0024291.1 mouse_genomes_project 19 36641584 36684431 + MGP_CASTEiJ_P0051483 Lgi1 protein_coding protein_coding MGP_CASTEiJ_T0051484.1 MGP_CASTEiJ_G0024291.1 mouse_genomes_project 19 36641653 36684431 + MGP_CASTEiJ_P0051484 Lgi1 protein_coding protein_coding MGP_CASTEiJ_T0051485.1 MGP_CASTEiJ_G0024291.1 mouse_genomes_project 19 36641667 36675596 + MGP_CASTEiJ_P0051485 Lgi1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051486.1 MGP_CASTEiJ_G0024291.1 mouse_genomes_project 19 36641678 36684129 + MGP_CASTEiJ_P0051486 Lgi1 protein_coding protein_coding MGP_CASTEiJ_T0051487.1 MGP_CASTEiJ_G0024291.1 mouse_genomes_project 19 36641769 36642900 + Lgi1 protein_coding retained_intron MGP_CASTEiJ_T0051488.1 MGP_CASTEiJ_G0024291.1 mouse_genomes_project 19 36641822 36646045 + Lgi1 protein_coding retained_intron MGP_CASTEiJ_T0051489.1 MGP_CASTEiJ_G0024291.1 mouse_genomes_project 19 36642395 36678878 + Lgi1 protein_coding retained_intron MGP_CASTEiJ_T0051099.1 MGP_CASTEiJ_G0024150.1 mouse_genomes_project 19 10666044 10666989 - MGP_CASTEiJ_P0051099 Olfr1497 protein_coding protein_coding MGP_CASTEiJ_T0051323.1 MGP_CASTEiJ_G0024231.1 mouse_genomes_project 19 27789571 27829272 + MGP_CASTEiJ_P0051323 Il33 protein_coding protein_coding MGP_CASTEiJ_T0051324.1 MGP_CASTEiJ_G0024231.1 mouse_genomes_project 19 27789572 27820860 + MGP_CASTEiJ_P0051324 Il33 protein_coding protein_coding MGP_CASTEiJ_T0051325.1 MGP_CASTEiJ_G0024231.1 mouse_genomes_project 19 27789589 27827529 + MGP_CASTEiJ_P0051325 Il33 protein_coding protein_coding MGP_CASTEiJ_T0051326.1 MGP_CASTEiJ_G0024231.1 mouse_genomes_project 19 27813926 27829258 + MGP_CASTEiJ_P0051326 Il33 protein_coding protein_coding MGP_CASTEiJ_T0051327.1 MGP_CASTEiJ_G0024231.1 mouse_genomes_project 19 27820598 27821572 + MGP_CASTEiJ_P0051327 Il33 protein_coding protein_coding MGP_CASTEiJ_T0051342.1 MGP_CASTEiJ_G0024237.1 mouse_genomes_project 19 28502127 29742987 - MGP_CASTEiJ_P0051342 Prkg1 protein_coding protein_coding MGP_CASTEiJ_T0051343.1 MGP_CASTEiJ_G0024237.1 mouse_genomes_project 19 28503115 29647565 - MGP_CASTEiJ_P0051343 Prkg1 protein_coding protein_coding MGP_CASTEiJ_T0051344.1 MGP_CASTEiJ_G0024237.1 mouse_genomes_project 19 28503529 28509140 - Prkg1 protein_coding processed_transcript MGP_CASTEiJ_T0051345.1 MGP_CASTEiJ_G0024237.1 mouse_genomes_project 19 28503531 28509140 - Prkg1 protein_coding processed_transcript MGP_CASTEiJ_T0051346.1 MGP_CASTEiJ_G0024237.1 mouse_genomes_project 19 28553531 28560108 - Prkg1 protein_coding processed_transcript MGP_CASTEiJ_T0051347.1 MGP_CASTEiJ_G0024237.1 mouse_genomes_project 19 28644010 28701963 - Prkg1 protein_coding retained_intron MGP_CASTEiJ_T0051350.1 MGP_CASTEiJ_G0024237.1 mouse_genomes_project 19 29717839 29742927 - MGP_CASTEiJ_P0051350 Prkg1 protein_coding protein_coding MGP_CASTEiJ_T0012989.1 MGP_CASTEiJ_G0011152.1 mouse_genomes_project 19 28037577 28037951 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0051675.1 MGP_CASTEiJ_G0024353.1 mouse_genomes_project 19 42285168 42302608 + MGP_CASTEiJ_P0051675 Cutc protein_coding protein_coding MGP_CASTEiJ_T0051676.1 MGP_CASTEiJ_G0024353.1 mouse_genomes_project 19 42285270 42302615 + MGP_CASTEiJ_P0051676 Cutc protein_coding protein_coding MGP_CASTEiJ_T0051677.1 MGP_CASTEiJ_G0024353.1 mouse_genomes_project 19 42285309 42302215 + MGP_CASTEiJ_P0051677 Cutc protein_coding protein_coding MGP_CASTEiJ_T0051678.1 MGP_CASTEiJ_G0024353.1 mouse_genomes_project 19 42298839 42302615 + Cutc protein_coding retained_intron MGP_CASTEiJ_T0010024.1 MGP_CASTEiJ_G0008212.1 mouse_genomes_project 19 26928326 26928423 + Mir101b miRNA miRNA MGP_CASTEiJ_T0051570.1 MGP_CASTEiJ_G0024319.1 mouse_genomes_project 19 39879207 39962452 + MGP_CASTEiJ_P0051570 Lcor protein_coding protein_coding MGP_CASTEiJ_T0051571.1 MGP_CASTEiJ_G0024319.1 mouse_genomes_project 19 39949902 39959982 + MGP_CASTEiJ_P0051571 Lcor protein_coding protein_coding MGP_CASTEiJ_T0051625.1 MGP_CASTEiJ_G0024338.1 mouse_genomes_project 19 40614916 40630568 + Zfyve27 protein_coding retained_intron MGP_CASTEiJ_T0051626.1 MGP_CASTEiJ_G0024338.1 mouse_genomes_project 19 40622498 40649360 + MGP_CASTEiJ_P0051626 Zfyve27 protein_coding protein_coding MGP_CASTEiJ_T0051627.1 MGP_CASTEiJ_G0024338.1 mouse_genomes_project 19 40622525 40644650 + MGP_CASTEiJ_P0051627 Zfyve27 protein_coding protein_coding MGP_CASTEiJ_T0051628.1 MGP_CASTEiJ_G0024338.1 mouse_genomes_project 19 40622626 40626105 + Zfyve27 protein_coding retained_intron MGP_CASTEiJ_T0051629.1 MGP_CASTEiJ_G0024338.1 mouse_genomes_project 19 40631669 40636913 + MGP_CASTEiJ_P0051629 Zfyve27 protein_coding protein_coding MGP_CASTEiJ_T0051630.1 MGP_CASTEiJ_G0024338.1 mouse_genomes_project 19 40636238 40637582 + Zfyve27 protein_coding retained_intron MGP_CASTEiJ_T0051631.1 MGP_CASTEiJ_G0024338.1 mouse_genomes_project 19 40638207 40643446 + Zfyve27 protein_coding retained_intron MGP_CASTEiJ_T0051632.1 MGP_CASTEiJ_G0024338.1 mouse_genomes_project 19 40638481 40643826 + Zfyve27 protein_coding retained_intron MGP_CASTEiJ_T0051573.1 MGP_CASTEiJ_G0024321.1 mouse_genomes_project 19 39996307 39999108 + MGP_CASTEiJ_P0051573 AI606181 protein_coding protein_coding MGP_CASTEiJ_T0051700.1 MGP_CASTEiJ_G0024359.1 mouse_genomes_project 19 42644513 42681609 - MGP_CASTEiJ_P0051700 Chuk protein_coding protein_coding MGP_CASTEiJ_T0051701.1 MGP_CASTEiJ_G0024359.1 mouse_genomes_project 19 42644514 42681606 - MGP_CASTEiJ_P0051701 Chuk protein_coding protein_coding MGP_CASTEiJ_T0051702.1 MGP_CASTEiJ_G0024359.1 mouse_genomes_project 19 42645551 42647083 - Chuk protein_coding retained_intron MGP_CASTEiJ_T0051703.1 MGP_CASTEiJ_G0024359.1 mouse_genomes_project 19 42648115 42651482 - Chuk protein_coding retained_intron MGP_CASTEiJ_T0051704.1 MGP_CASTEiJ_G0024359.1 mouse_genomes_project 19 42648420 42657768 - Chuk protein_coding retained_intron MGP_CASTEiJ_T0051705.1 MGP_CASTEiJ_G0024359.1 mouse_genomes_project 19 42650732 42651729 - Chuk protein_coding retained_intron MGP_CASTEiJ_T0051706.1 MGP_CASTEiJ_G0024359.1 mouse_genomes_project 19 42654769 42681598 - Chuk protein_coding retained_intron MGP_CASTEiJ_T0051707.1 MGP_CASTEiJ_G0024359.1 mouse_genomes_project 19 42670222 42681553 - MGP_CASTEiJ_P0051707 Chuk protein_coding unknown_likely_coding MGP_CASTEiJ_T0051708.1 MGP_CASTEiJ_G0024359.1 mouse_genomes_project 19 42671284 42681411 - Chuk protein_coding retained_intron MGP_CASTEiJ_T0050921.1 MGP_CASTEiJ_G0024059.1 mouse_genomes_project 19 7247280 7272669 + MGP_CASTEiJ_P0050921 Ddb1 protein_coding protein_coding MGP_CASTEiJ_T0012969.1 MGP_CASTEiJ_G0011132.1 mouse_genomes_project 19 4670568 4672026 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0006929.1 MGP_CASTEiJ_G0005702.1 mouse_genomes_project 19 58266021 58292863 + 1810007D17Rik lincRNA lincRNA MGP_CASTEiJ_T0100821.1 MGP_CASTEiJ_G0037734.1 mouse_genomes_project 19 5493103 5493178 + Gm25894 snoRNA snoRNA MGP_CASTEiJ_T0051439.1 MGP_CASTEiJ_G0024276.1 mouse_genomes_project 19 35171093 35267078 + MGP_CASTEiJ_P0051439 Btaf1 protein_coding protein_coding MGP_CASTEiJ_T0050790.1 MGP_CASTEiJ_G0024014.1 mouse_genomes_project 19 5526641 5542120 + MGP_CASTEiJ_P0050790 Nxf1 protein_coding protein_coding MGP_CASTEiJ_T0050791.1 MGP_CASTEiJ_G0024014.1 mouse_genomes_project 19 5526675 5544952 + MGP_CASTEiJ_P0050791 Nxf1 protein_coding protein_coding MGP_CASTEiJ_T0050792.1 MGP_CASTEiJ_G0024014.1 mouse_genomes_project 19 5526687 5538801 + Nxf1 protein_coding processed_transcript MGP_CASTEiJ_T0050793.1 MGP_CASTEiJ_G0024014.1 mouse_genomes_project 19 5526718 5536476 + MGP_CASTEiJ_P0050793 Nxf1 protein_coding protein_coding MGP_CASTEiJ_T0050794.1 MGP_CASTEiJ_G0024014.1 mouse_genomes_project 19 5526718 5534938 + MGP_CASTEiJ_P0050794 Nxf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050795.1 MGP_CASTEiJ_G0024014.1 mouse_genomes_project 19 5536118 5538584 + MGP_CASTEiJ_P0050795 Nxf1 protein_coding protein_coding MGP_CASTEiJ_T0050796.1 MGP_CASTEiJ_G0024014.1 mouse_genomes_project 19 5537864 5540364 + Nxf1 protein_coding retained_intron MGP_CASTEiJ_T0050797.1 MGP_CASTEiJ_G0024014.1 mouse_genomes_project 19 5537902 5543415 + MGP_CASTEiJ_P0050797 Nxf1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050798.1 MGP_CASTEiJ_G0024014.1 mouse_genomes_project 19 5538198 5539075 + Nxf1 protein_coding retained_intron MGP_CASTEiJ_T0050799.1 MGP_CASTEiJ_G0024014.1 mouse_genomes_project 19 5539822 5542047 + MGP_CASTEiJ_P0050799 Nxf1 protein_coding protein_coding MGP_CASTEiJ_T0050800.1 MGP_CASTEiJ_G0024014.1 mouse_genomes_project 19 5541289 5542119 + Nxf1 protein_coding processed_transcript MGP_CASTEiJ_T0050801.1 MGP_CASTEiJ_G0024014.1 mouse_genomes_project 19 5541333 5542060 + Nxf1 protein_coding retained_intron MGP_CASTEiJ_T0050697.1 MGP_CASTEiJ_G0023991.1 mouse_genomes_project 19 4019559 4033297 - MGP_CASTEiJ_P0050697 Flrt1 protein_coding protein_coding MGP_CASTEiJ_T0051367.1 MGP_CASTEiJ_G0024243.1 mouse_genomes_project 19 30498893 30529401 + MGP_CASTEiJ_P0051367 Minpp1 protein_coding protein_coding MGP_CASTEiJ_T0051714.1 MGP_CASTEiJ_G0024363.1 mouse_genomes_project 19 42772547 42811739 + MGP_CASTEiJ_P0051714 Scd3 protein_coding protein_coding MGP_CASTEiJ_T0051475.1 MGP_CASTEiJ_G0024288.1 mouse_genomes_project 19 36477565 36486234 - MGP_CASTEiJ_P0051475 Rbp4 protein_coding protein_coding MGP_CASTEiJ_T0051476.1 MGP_CASTEiJ_G0024288.1 mouse_genomes_project 19 36477565 36485724 - MGP_CASTEiJ_P0051476 Rbp4 protein_coding protein_coding MGP_CASTEiJ_T0052091.1 MGP_CASTEiJ_G0024473.1 mouse_genomes_project 19 58158344 58207818 + MGP_CASTEiJ_P0052091 Ccdc172 protein_coding protein_coding MGP_CASTEiJ_T0051890.1 MGP_CASTEiJ_G0024424.1 mouse_genomes_project 19 46070934 46152417 + MGP_CASTEiJ_P0051890 Neurl1a protein_coding protein_coding MGP_CASTEiJ_T0051891.1 MGP_CASTEiJ_G0024424.1 mouse_genomes_project 19 46071392 46150781 + MGP_CASTEiJ_P0051891 Neurl1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0051892.1 MGP_CASTEiJ_G0024424.1 mouse_genomes_project 19 46120302 46152417 + MGP_CASTEiJ_P0051892 Neurl1a protein_coding protein_coding MGP_CASTEiJ_T0050217.1 MGP_CASTEiJ_G0023858.1 mouse_genomes_project 19 989545 998654 - MGP_CASTEiJ_P0050217 Rps6kb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050218.1 MGP_CASTEiJ_G0023858.1 mouse_genomes_project 19 989548 998674 - Rps6kb2 protein_coding retained_intron MGP_CASTEiJ_T0050219.1 MGP_CASTEiJ_G0023858.1 mouse_genomes_project 19 989548 990906 - Rps6kb2 protein_coding retained_intron MGP_CASTEiJ_T0050220.1 MGP_CASTEiJ_G0023858.1 mouse_genomes_project 19 989548 998658 - MGP_CASTEiJ_P0050220 Rps6kb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050221.1 MGP_CASTEiJ_G0023858.1 mouse_genomes_project 19 989739 997688 - Rps6kb2 protein_coding processed_transcript MGP_CASTEiJ_T0050222.1 MGP_CASTEiJ_G0023858.1 mouse_genomes_project 19 989739 998643 - MGP_CASTEiJ_P0050222 Rps6kb2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050223.1 MGP_CASTEiJ_G0023858.1 mouse_genomes_project 19 989763 998603 - MGP_CASTEiJ_P0050223 Rps6kb2 protein_coding protein_coding MGP_CASTEiJ_T0050224.1 MGP_CASTEiJ_G0023858.1 mouse_genomes_project 19 997617 998658 - Rps6kb2 protein_coding processed_transcript MGP_CASTEiJ_T0050225.1 MGP_CASTEiJ_G0023858.1 mouse_genomes_project 19 997874 998688 - Rps6kb2 protein_coding retained_intron MGP_CASTEiJ_T0050226.1 MGP_CASTEiJ_G0023858.1 mouse_genomes_project 19 998172 998712 - Rps6kb2 protein_coding processed_transcript MGP_CASTEiJ_T0050158.1 MGP_CASTEiJ_G0023844.1 mouse_genomes_project 19 821809 823326 + MGP_CASTEiJ_P0050158 Nudt8 protein_coding protein_coding MGP_CASTEiJ_T0050159.1 MGP_CASTEiJ_G0023844.1 mouse_genomes_project 19 821855 827080 + MGP_CASTEiJ_P0050159 Nudt8 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050160.1 MGP_CASTEiJ_G0023844.1 mouse_genomes_project 19 821860 823324 + MGP_CASTEiJ_P0050160 Nudt8 protein_coding protein_coding MGP_CASTEiJ_T0051285.1 MGP_CASTEiJ_G0024220.1 mouse_genomes_project 19 27058760 27122582 + MGP_CASTEiJ_P0051285 Jak2 protein_coding protein_coding MGP_CASTEiJ_T0051286.1 MGP_CASTEiJ_G0024220.1 mouse_genomes_project 19 27058760 27122582 + MGP_CASTEiJ_P0051286 Jak2 protein_coding protein_coding MGP_CASTEiJ_T0010012.1 MGP_CASTEiJ_G0008200.1 mouse_genomes_project 19 3826430 3826521 - Mir6990 miRNA miRNA MGP_CASTEiJ_T0010001.1 MGP_CASTEiJ_G0008189.1 mouse_genomes_project 19 1056800 1056888 - Gm26115 miRNA miRNA MGP_CASTEiJ_T0051923.1 MGP_CASTEiJ_G0024431.1 mouse_genomes_project 19 46778228 46787827 + MGP_CASTEiJ_P0051923 Gsto1 protein_coding protein_coding MGP_CASTEiJ_T0051924.1 MGP_CASTEiJ_G0024431.1 mouse_genomes_project 19 46778341 46778980 + Gsto1 protein_coding retained_intron MGP_CASTEiJ_T0051925.1 MGP_CASTEiJ_G0024431.1 mouse_genomes_project 19 46786068 46787604 + Gsto1 protein_coding retained_intron MGP_CASTEiJ_T0101860.1 MGP_CASTEiJ_G0038603.1 mouse_genomes_project 19 45150933 45153073 - unitary_pseudogene processed_transcript MGP_CASTEiJ_T0101861.1 MGP_CASTEiJ_G0038603.1 mouse_genomes_project 19 45151629 45153073 - unitary_pseudogene unitary_pseudogene MGP_CASTEiJ_T0050936.1 MGP_CASTEiJ_G0024066.1 mouse_genomes_project 19 7516885 7528459 - MGP_CASTEiJ_P0050936 Tmem132a protein_coding protein_coding MGP_CASTEiJ_T0050937.1 MGP_CASTEiJ_G0024066.1 mouse_genomes_project 19 7516897 7528297 - MGP_CASTEiJ_P0050937 Tmem132a protein_coding protein_coding MGP_CASTEiJ_T0051270.1 MGP_CASTEiJ_G0024215.1 mouse_genomes_project 19 26679374 26700502 - MGP_CASTEiJ_P0051270 4430402I18Rik protein_coding protein_coding MGP_CASTEiJ_T0051272.1 MGP_CASTEiJ_G0024215.1 mouse_genomes_project 19 26687493 26759888 - MGP_CASTEiJ_P0051272 4430402I18Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051273.1 MGP_CASTEiJ_G0024215.1 mouse_genomes_project 19 26711682 26756311 - MGP_CASTEiJ_P0051273 4430402I18Rik protein_coding protein_coding MGP_CASTEiJ_T0051274.1 MGP_CASTEiJ_G0024215.1 mouse_genomes_project 19 26712148 26759958 - MGP_CASTEiJ_P0051274 4430402I18Rik protein_coding protein_coding MGP_CASTEiJ_T0051275.1 MGP_CASTEiJ_G0024215.1 mouse_genomes_project 19 26712151 26717857 - 4430402I18Rik protein_coding processed_transcript MGP_CASTEiJ_T0051276.1 MGP_CASTEiJ_G0024215.1 mouse_genomes_project 19 26712306 26755745 - MGP_CASTEiJ_P0051276 4430402I18Rik protein_coding protein_coding MGP_CASTEiJ_T0051277.1 MGP_CASTEiJ_G0024215.1 mouse_genomes_project 19 26712306 26755745 - MGP_CASTEiJ_P0051277 4430402I18Rik protein_coding protein_coding MGP_CASTEiJ_T0051278.1 MGP_CASTEiJ_G0024215.1 mouse_genomes_project 19 26738006 26756065 - MGP_CASTEiJ_P0051278 4430402I18Rik protein_coding protein_coding MGP_CASTEiJ_T0006889.1 MGP_CASTEiJ_G0005674.1 mouse_genomes_project 19 20423846 20469134 - C330002G04Rik lincRNA lincRNA MGP_CASTEiJ_T0050692.1 MGP_CASTEiJ_G0023987.1 mouse_genomes_project 19 3914049 3916963 + MGP_CASTEiJ_P0050692 Trpt1 protein_coding protein_coding MGP_CASTEiJ_T0050891.1 MGP_CASTEiJ_G0024047.1 mouse_genomes_project 19 6838641 6842492 + Tmem258 protein_coding processed_transcript MGP_CASTEiJ_T0050892.1 MGP_CASTEiJ_G0024047.1 mouse_genomes_project 19 6838641 6842492 + MGP_CASTEiJ_P0050892 Tmem258 protein_coding protein_coding MGP_CASTEiJ_T0050893.1 MGP_CASTEiJ_G0024047.1 mouse_genomes_project 19 6838846 6842486 + Tmem258 protein_coding retained_intron MGP_CASTEiJ_T0050894.1 MGP_CASTEiJ_G0024047.1 mouse_genomes_project 19 6840662 6842492 + MGP_CASTEiJ_P0050894 Tmem258 protein_coding protein_coding MGP_CASTEiJ_T0098365.1 MGP_CASTEiJ_G0035296.1 mouse_genomes_project 19 13800104 13800662 + pseudogene pseudogene MGP_CASTEiJ_T0051143.1 MGP_CASTEiJ_G0024171.1 mouse_genomes_project 19 15866154 15871384 + MGP_CASTEiJ_P0051143 D030056L22Rik protein_coding protein_coding MGP_CASTEiJ_T0051144.1 MGP_CASTEiJ_G0024171.1 mouse_genomes_project 19 15866197 15871384 + MGP_CASTEiJ_P0051144 D030056L22Rik protein_coding protein_coding MGP_CASTEiJ_T0051158.1 MGP_CASTEiJ_G0024176.1 mouse_genomes_project 19 17952120 17994798 - MGP_CASTEiJ_P0051158 Aldh1a7 protein_coding protein_coding MGP_CASTEiJ_T0051462.1 MGP_CASTEiJ_G0024281.1 mouse_genomes_project 19 35738786 35749313 + MGP_CASTEiJ_P0051462 Hhex protein_coding unknown_likely_coding MGP_CASTEiJ_T0051463.1 MGP_CASTEiJ_G0024281.1 mouse_genomes_project 19 35738797 35745843 + MGP_CASTEiJ_P0051463 Hhex protein_coding protein_coding MGP_CASTEiJ_T0051464.1 MGP_CASTEiJ_G0024281.1 mouse_genomes_project 19 35738857 35744927 + MGP_CASTEiJ_P0051464 Hhex protein_coding protein_coding MGP_CASTEiJ_T0012976.1 MGP_CASTEiJ_G0011139.1 mouse_genomes_project 19 12396241 12396516 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0051930.1 MGP_CASTEiJ_G0024433.1 mouse_genomes_project 19 46865672 46996921 + MGP_CASTEiJ_P0051930 Cfap58 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051931.1 MGP_CASTEiJ_G0024433.1 mouse_genomes_project 19 46865680 46977461 + MGP_CASTEiJ_P0051931 Cfap58 protein_coding protein_coding MGP_CASTEiJ_T0051025.1 MGP_CASTEiJ_G0024095.1 mouse_genomes_project 19 8355938 8378312 - MGP_CASTEiJ_P0051025 Oosp1 protein_coding protein_coding MGP_CASTEiJ_T0051026.1 MGP_CASTEiJ_G0024095.1 mouse_genomes_project 19 8356013 8378190 - MGP_CASTEiJ_P0051026 Oosp1 protein_coding protein_coding MGP_CASTEiJ_T0051027.1 MGP_CASTEiJ_G0024095.1 mouse_genomes_project 19 8356151 8378196 - MGP_CASTEiJ_P0051027 Oosp1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051984.1 MGP_CASTEiJ_G0024452.1 mouse_genomes_project 19 54615947 54661875 - MGP_CASTEiJ_P0051984 Gucy2g protein_coding protein_coding MGP_CASTEiJ_T0050689.1 MGP_CASTEiJ_G0023986.1 mouse_genomes_project 19 3910940 3914036 - MGP_CASTEiJ_P0050689 Nudt22 protein_coding protein_coding MGP_CASTEiJ_T0050690.1 MGP_CASTEiJ_G0023986.1 mouse_genomes_project 19 3910940 3913956 - MGP_CASTEiJ_P0050690 Nudt22 protein_coding protein_coding MGP_CASTEiJ_T0050691.1 MGP_CASTEiJ_G0023986.1 mouse_genomes_project 19 3910941 3912806 - Nudt22 protein_coding retained_intron MGP_CASTEiJ_T0052075.1 MGP_CASTEiJ_G0024469.1 mouse_genomes_project 19 56930472 56960843 + MGP_CASTEiJ_P0052075 Fam160b1 protein_coding protein_coding MGP_CASTEiJ_T0052076.1 MGP_CASTEiJ_G0024469.1 mouse_genomes_project 19 56930742 56957875 + MGP_CASTEiJ_P0052076 Fam160b1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050155.1 MGP_CASTEiJ_G0023841.1 mouse_genomes_project 19 773403 779256 + MGP_CASTEiJ_P0050155 protein_coding protein_coding MGP_CASTEiJ_T0051011.1 MGP_CASTEiJ_G0024090.1 mouse_genomes_project 19 8248578 8258100 - MGP_CASTEiJ_P0051011 Ms4a4d protein_coding protein_coding MGP_CASTEiJ_T0051759.1 MGP_CASTEiJ_G0024383.1 mouse_genomes_project 19 44051755 44234672 + MGP_CASTEiJ_P0051759 Btrc protein_coding protein_coding MGP_CASTEiJ_T0051760.1 MGP_CASTEiJ_G0024383.1 mouse_genomes_project 19 44051755 44234672 + MGP_CASTEiJ_P0051760 Btrc protein_coding protein_coding MGP_CASTEiJ_T0051761.1 MGP_CASTEiJ_G0024383.1 mouse_genomes_project 19 44051860 44233361 + MGP_CASTEiJ_P0051761 Btrc protein_coding unknown_likely_coding MGP_CASTEiJ_T0050957.1 MGP_CASTEiJ_G0024071.1 mouse_genomes_project 19 7608434 7614296 - Ccdc86 protein_coding processed_transcript MGP_CASTEiJ_T0050958.1 MGP_CASTEiJ_G0024071.1 mouse_genomes_project 19 7608434 7616113 - MGP_CASTEiJ_P0050958 Ccdc86 protein_coding protein_coding MGP_CASTEiJ_T0050959.1 MGP_CASTEiJ_G0024071.1 mouse_genomes_project 19 7612462 7616098 - Ccdc86 protein_coding retained_intron MGP_CASTEiJ_T0051915.1 MGP_CASTEiJ_G0024429.1 mouse_genomes_project 19 46659663 46665971 + MGP_CASTEiJ_P0051915 Sfr1 protein_coding protein_coding MGP_CASTEiJ_T0100846.1 MGP_CASTEiJ_G0037759.1 mouse_genomes_project 19 60546123 60546255 - Snora19 snoRNA snoRNA MGP_CASTEiJ_T0051349.1 MGP_CASTEiJ_G0024239.1 mouse_genomes_project 19 29534306 29647505 - MGP_CASTEiJ_P0051349 unknown_likely_coding unknown_likely_coding MGP_CASTEiJ_T0051043.1 MGP_CASTEiJ_G0024108.1 mouse_genomes_project 19 8868826 8869874 - MGP_CASTEiJ_P0051043 Olfr76 protein_coding protein_coding MGP_CASTEiJ_T0051379.1 MGP_CASTEiJ_G0024251.1 mouse_genomes_project 19 31824304 31838679 - MGP_CASTEiJ_P0051379 Lipo1 protein_coding protein_coding MGP_CASTEiJ_T0051380.1 MGP_CASTEiJ_G0024251.1 mouse_genomes_project 19 31825075 31836282 - MGP_CASTEiJ_P0051380 Lipo1 protein_coding protein_coding MGP_CASTEiJ_T0050358.1 MGP_CASTEiJ_G0023909.1 mouse_genomes_project 19 2321065 2325414 - MGP_CASTEiJ_P0050358 Tsga10ip protein_coding protein_coding MGP_CASTEiJ_T0050359.1 MGP_CASTEiJ_G0023909.1 mouse_genomes_project 19 2321078 2347308 - MGP_CASTEiJ_P0050359 Tsga10ip protein_coding unknown_likely_coding MGP_CASTEiJ_T0051846.1 MGP_CASTEiJ_G0024403.1 mouse_genomes_project 19 45142615 45177648 + MGP_CASTEiJ_P0051846 Mfsd13a protein_coding protein_coding MGP_CASTEiJ_T0051847.1 MGP_CASTEiJ_G0024403.1 mouse_genomes_project 19 45159585 45177648 + MGP_CASTEiJ_P0051847 Mfsd13a protein_coding protein_coding MGP_CASTEiJ_T0051848.1 MGP_CASTEiJ_G0024403.1 mouse_genomes_project 19 45159640 45177648 + MGP_CASTEiJ_P0051848 Mfsd13a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051849.1 MGP_CASTEiJ_G0024403.1 mouse_genomes_project 19 45159644 45170270 + MGP_CASTEiJ_P0051849 Mfsd13a protein_coding protein_coding MGP_CASTEiJ_T0051850.1 MGP_CASTEiJ_G0024403.1 mouse_genomes_project 19 45169041 45177648 + Mfsd13a protein_coding retained_intron MGP_CASTEiJ_T0051480.1 MGP_CASTEiJ_G0024290.1 mouse_genomes_project 19 36551209 36591301 - MGP_CASTEiJ_P0051480 Fra10ac1 protein_coding protein_coding MGP_CASTEiJ_T0051266.1 MGP_CASTEiJ_G0024214.1 mouse_genomes_project 19 26618425 26663049 + Slc1a1 protein_coding retained_intron MGP_CASTEiJ_T0051267.1 MGP_CASTEiJ_G0024214.1 mouse_genomes_project 19 26618450 26702583 + MGP_CASTEiJ_P0051267 Slc1a1 protein_coding protein_coding MGP_CASTEiJ_T0051268.1 MGP_CASTEiJ_G0024214.1 mouse_genomes_project 19 26618511 26693205 + Slc1a1 protein_coding retained_intron MGP_CASTEiJ_T0051269.1 MGP_CASTEiJ_G0024214.1 mouse_genomes_project 19 26679356 26700500 + Slc1a1 protein_coding retained_intron MGP_CASTEiJ_T0051271.1 MGP_CASTEiJ_G0024214.1 mouse_genomes_project 19 26682124 26701261 + Slc1a1 protein_coding retained_intron MGP_CASTEiJ_T0051215.1 MGP_CASTEiJ_G0024204.1 mouse_genomes_project 19 23088423 23201557 + MGP_CASTEiJ_P0051215 Dmrt1 protein_coding protein_coding MGP_CASTEiJ_T0051216.1 MGP_CASTEiJ_G0024204.1 mouse_genomes_project 19 23088512 23200727 + MGP_CASTEiJ_P0051216 Dmrt1 protein_coding protein_coding MGP_CASTEiJ_T0051217.1 MGP_CASTEiJ_G0024204.1 mouse_genomes_project 19 23088513 23155280 + Dmrt1 protein_coding processed_transcript MGP_CASTEiJ_T0050556.1 MGP_CASTEiJ_G0023965.1 mouse_genomes_project 19 3340019 3345932 + MGP_CASTEiJ_P0050556 Men1 protein_coding protein_coding MGP_CASTEiJ_T0050557.1 MGP_CASTEiJ_G0023965.1 mouse_genomes_project 19 3340019 3345921 + MGP_CASTEiJ_P0050557 Men1 protein_coding protein_coding MGP_CASTEiJ_T0050558.1 MGP_CASTEiJ_G0023965.1 mouse_genomes_project 19 3340053 3345930 + MGP_CASTEiJ_P0050558 Men1 protein_coding protein_coding MGP_CASTEiJ_T0050559.1 MGP_CASTEiJ_G0023965.1 mouse_genomes_project 19 3340079 3345930 + MGP_CASTEiJ_P0050559 Men1 protein_coding protein_coding MGP_CASTEiJ_T0050560.1 MGP_CASTEiJ_G0023965.1 mouse_genomes_project 19 3340079 3345930 + MGP_CASTEiJ_P0050560 Men1 protein_coding protein_coding MGP_CASTEiJ_T0050561.1 MGP_CASTEiJ_G0023965.1 mouse_genomes_project 19 3340086 3345932 + Men1 protein_coding retained_intron MGP_CASTEiJ_T0050562.1 MGP_CASTEiJ_G0023965.1 mouse_genomes_project 19 3340087 3345824 + MGP_CASTEiJ_P0050562 Men1 protein_coding protein_coding MGP_CASTEiJ_T0050563.1 MGP_CASTEiJ_G0023965.1 mouse_genomes_project 19 3340104 3345506 + MGP_CASTEiJ_P0050563 Men1 protein_coding protein_coding MGP_CASTEiJ_T0050564.1 MGP_CASTEiJ_G0023965.1 mouse_genomes_project 19 3340151 3345930 + MGP_CASTEiJ_P0050564 Men1 protein_coding protein_coding MGP_CASTEiJ_T0050565.1 MGP_CASTEiJ_G0023965.1 mouse_genomes_project 19 3340501 3345215 + MGP_CASTEiJ_P0050565 Men1 protein_coding protein_coding MGP_CASTEiJ_T0050566.1 MGP_CASTEiJ_G0023965.1 mouse_genomes_project 19 3341950 3343451 + MGP_CASTEiJ_P0050566 Men1 protein_coding protein_coding MGP_CASTEiJ_T0050567.1 MGP_CASTEiJ_G0023965.1 mouse_genomes_project 19 3344889 3345853 + MGP_CASTEiJ_P0050567 Men1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050086.1 MGP_CASTEiJ_G0023828.1 mouse_genomes_project 19 30648 40601 + MGP_CASTEiJ_P0050086 Mrpl21 protein_coding protein_coding MGP_CASTEiJ_T0050087.1 MGP_CASTEiJ_G0023828.1 mouse_genomes_project 19 30802 36943 + Mrpl21 protein_coding retained_intron MGP_CASTEiJ_T0050088.1 MGP_CASTEiJ_G0023828.1 mouse_genomes_project 19 30807 33074 + Mrpl21 protein_coding retained_intron MGP_CASTEiJ_T0050089.1 MGP_CASTEiJ_G0023828.1 mouse_genomes_project 19 30807 38965 + MGP_CASTEiJ_P0050089 Mrpl21 protein_coding protein_coding MGP_CASTEiJ_T0050090.1 MGP_CASTEiJ_G0023828.1 mouse_genomes_project 19 30811 35488 + MGP_CASTEiJ_P0050090 Mrpl21 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050091.1 MGP_CASTEiJ_G0023828.1 mouse_genomes_project 19 34559 38959 + Mrpl21 protein_coding retained_intron MGP_CASTEiJ_T0052027.1 MGP_CASTEiJ_G0024461.1 mouse_genomes_project 19 56043813 56062837 - MGP_CASTEiJ_P0052027 Dclre1a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052028.1 MGP_CASTEiJ_G0024461.1 mouse_genomes_project 19 56043815 56061853 - Dclre1a protein_coding retained_intron MGP_CASTEiJ_T0052029.1 MGP_CASTEiJ_G0024461.1 mouse_genomes_project 19 56043815 56062907 - MGP_CASTEiJ_P0052029 Dclre1a protein_coding protein_coding MGP_CASTEiJ_T0052030.1 MGP_CASTEiJ_G0024461.1 mouse_genomes_project 19 56044228 56052037 - Dclre1a protein_coding retained_intron MGP_CASTEiJ_T0052031.1 MGP_CASTEiJ_G0024461.1 mouse_genomes_project 19 56054671 56056232 - Dclre1a protein_coding processed_transcript MGP_CASTEiJ_T0052032.1 MGP_CASTEiJ_G0024461.1 mouse_genomes_project 19 56061555 56062727 - MGP_CASTEiJ_P0052032 Dclre1a protein_coding protein_coding MGP_CASTEiJ_T0006926.1 MGP_CASTEiJ_G0005699.1 mouse_genomes_project 19 52741767 52743857 + 4833407H14Rik lincRNA lincRNA MGP_CASTEiJ_T0050901.1 MGP_CASTEiJ_G0024049.1 mouse_genomes_project 19 6879686 6940600 - MGP_CASTEiJ_P0050901 Dagla protein_coding protein_coding MGP_CASTEiJ_T0050902.1 MGP_CASTEiJ_G0024049.1 mouse_genomes_project 19 6879689 6940580 - MGP_CASTEiJ_P0050902 Dagla protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050903.1 MGP_CASTEiJ_G0024049.1 mouse_genomes_project 19 6887752 6893369 - Dagla protein_coding processed_transcript MGP_CASTEiJ_T0051076.1 MGP_CASTEiJ_G0024127.1 mouse_genomes_project 19 9659922 9660968 - MGP_CASTEiJ_P0051076 protein_coding protein_coding MGP_CASTEiJ_T0050352.1 MGP_CASTEiJ_G0023905.1 mouse_genomes_project 19 2274256 2279111 - MGP_CASTEiJ_P0050352 Cst6 protein_coding protein_coding MGP_CASTEiJ_T0012977.1 MGP_CASTEiJ_G0011140.1 mouse_genomes_project 19 12396247 12396516 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0050349.1 MGP_CASTEiJ_G0023902.1 mouse_genomes_project 19 2193040 2216871 - MGP_CASTEiJ_P0050349 Sf3b2 protein_coding protein_coding MGP_CASTEiJ_T0051804.1 MGP_CASTEiJ_G0024394.1 mouse_genomes_project 19 44805982 44829338 + Pprc1 protein_coding processed_transcript MGP_CASTEiJ_T0051805.1 MGP_CASTEiJ_G0024394.1 mouse_genomes_project 19 44823698 44840417 + MGP_CASTEiJ_P0051805 Pprc1 protein_coding protein_coding MGP_CASTEiJ_T0051806.1 MGP_CASTEiJ_G0024394.1 mouse_genomes_project 19 44823740 44840421 + MGP_CASTEiJ_P0051806 Pprc1 protein_coding protein_coding MGP_CASTEiJ_T0051807.1 MGP_CASTEiJ_G0024394.1 mouse_genomes_project 19 44823743 44840415 + MGP_CASTEiJ_P0051807 Pprc1 protein_coding protein_coding MGP_CASTEiJ_T0051808.1 MGP_CASTEiJ_G0024394.1 mouse_genomes_project 19 44823991 44828581 + Pprc1 protein_coding processed_transcript MGP_CASTEiJ_T0051809.1 MGP_CASTEiJ_G0024394.1 mouse_genomes_project 19 44823991 44829579 + MGP_CASTEiJ_P0051809 Pprc1 protein_coding protein_coding MGP_CASTEiJ_T0051810.1 MGP_CASTEiJ_G0024394.1 mouse_genomes_project 19 44824023 44829944 + MGP_CASTEiJ_P0051810 Pprc1 protein_coding protein_coding MGP_CASTEiJ_T0051811.1 MGP_CASTEiJ_G0024394.1 mouse_genomes_project 19 44824395 44829769 + MGP_CASTEiJ_P0051811 Pprc1 protein_coding protein_coding MGP_CASTEiJ_T0051812.1 MGP_CASTEiJ_G0024394.1 mouse_genomes_project 19 44824418 44829785 + MGP_CASTEiJ_P0051812 Pprc1 protein_coding protein_coding MGP_CASTEiJ_T0051813.1 MGP_CASTEiJ_G0024394.1 mouse_genomes_project 19 44831221 44840308 + Pprc1 protein_coding retained_intron MGP_CASTEiJ_T0051814.1 MGP_CASTEiJ_G0024394.1 mouse_genomes_project 19 44834988 44836104 + Pprc1 protein_coding processed_transcript MGP_CASTEiJ_T0051815.1 MGP_CASTEiJ_G0024394.1 mouse_genomes_project 19 44839249 44840308 + Pprc1 protein_coding retained_intron MGP_CASTEiJ_T0051895.1 MGP_CASTEiJ_G0024426.1 mouse_genomes_project 19 46424524 46461936 - MGP_CASTEiJ_P0051895 Obfc1 protein_coding protein_coding MGP_CASTEiJ_T0051896.1 MGP_CASTEiJ_G0024426.1 mouse_genomes_project 19 46424529 46432893 - Obfc1 protein_coding processed_transcript MGP_CASTEiJ_T0051897.1 MGP_CASTEiJ_G0024426.1 mouse_genomes_project 19 46424969 46461962 - MGP_CASTEiJ_P0051897 Obfc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051898.1 MGP_CASTEiJ_G0024426.1 mouse_genomes_project 19 46431340 46461853 - MGP_CASTEiJ_P0051898 Obfc1 protein_coding protein_coding MGP_CASTEiJ_T0051899.1 MGP_CASTEiJ_G0024426.1 mouse_genomes_project 19 46446469 46461781 - Obfc1 protein_coding processed_transcript MGP_CASTEiJ_T0051900.1 MGP_CASTEiJ_G0024426.1 mouse_genomes_project 19 46448272 46461713 - Obfc1 protein_coding processed_transcript MGP_CASTEiJ_T0051901.1 MGP_CASTEiJ_G0024426.1 mouse_genomes_project 19 46448401 46461911 - Obfc1 protein_coding retained_intron MGP_CASTEiJ_T0051902.1 MGP_CASTEiJ_G0024426.1 mouse_genomes_project 19 46448906 46462321 - MGP_CASTEiJ_P0051902 Obfc1 protein_coding protein_coding MGP_CASTEiJ_T0051903.1 MGP_CASTEiJ_G0024426.1 mouse_genomes_project 19 46457190 46461076 - Obfc1 protein_coding processed_transcript MGP_CASTEiJ_T0051904.1 MGP_CASTEiJ_G0024426.1 mouse_genomes_project 19 46460728 46461863 - Obfc1 protein_coding retained_intron MGP_CASTEiJ_T0051905.1 MGP_CASTEiJ_G0024426.1 mouse_genomes_project 19 46461103 46461841 - Obfc1 protein_coding processed_transcript MGP_CASTEiJ_T0051738.1 MGP_CASTEiJ_G0024372.1 mouse_genomes_project 19 43394010 43481454 + MGP_CASTEiJ_P0051738 Pax2 protein_coding protein_coding MGP_CASTEiJ_T0051739.1 MGP_CASTEiJ_G0024372.1 mouse_genomes_project 19 43395358 43481474 + MGP_CASTEiJ_P0051739 Pax2 protein_coding protein_coding MGP_CASTEiJ_T0051740.1 MGP_CASTEiJ_G0024372.1 mouse_genomes_project 19 43397907 43459984 + MGP_CASTEiJ_P0051740 Pax2 protein_coding protein_coding MGP_CASTEiJ_T0051395.1 MGP_CASTEiJ_G0024259.1 mouse_genomes_project 19 32323625 32364667 + MGP_CASTEiJ_P0051395 Fas protein_coding protein_coding MGP_CASTEiJ_T0051396.1 MGP_CASTEiJ_G0024259.1 mouse_genomes_project 19 32323625 32348524 + MGP_CASTEiJ_P0051396 Fas protein_coding protein_coding MGP_CASTEiJ_T0050216.1 MGP_CASTEiJ_G0023857.1 mouse_genomes_project 19 987348 989505 + MGP_CASTEiJ_P0050216 Ptprcap protein_coding protein_coding MGP_CASTEiJ_T0050885.1 MGP_CASTEiJ_G0024044.1 mouse_genomes_project 19 6682085 6720368 - MGP_CASTEiJ_P0050885 Fads2 protein_coding protein_coding MGP_CASTEiJ_T0100848.1 MGP_CASTEiJ_G0037761.1 mouse_genomes_project 19 60799396 60799525 - Gm22520 snoRNA snoRNA MGP_CASTEiJ_T0051965.1 MGP_CASTEiJ_G0024445.1 mouse_genomes_project 19 52986123 53191248 + MGP_CASTEiJ_P0051965 Rbm20 protein_coding protein_coding MGP_CASTEiJ_T0051966.1 MGP_CASTEiJ_G0024445.1 mouse_genomes_project 19 52986123 53167909 + MGP_CASTEiJ_P0051966 Rbm20 protein_coding protein_coding MGP_CASTEiJ_T0051967.1 MGP_CASTEiJ_G0024445.1 mouse_genomes_project 19 53117735 53138100 + Rbm20 protein_coding processed_transcript MGP_CASTEiJ_T0051968.1 MGP_CASTEiJ_G0024445.1 mouse_genomes_project 19 53167355 53191248 + MGP_CASTEiJ_P0051968 Rbm20 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051477.1 MGP_CASTEiJ_G0024289.1 mouse_genomes_project 19 36493698 36546669 + MGP_CASTEiJ_P0051477 Pde6c protein_coding protein_coding MGP_CASTEiJ_T0051478.1 MGP_CASTEiJ_G0024289.1 mouse_genomes_project 19 36493698 36546669 + MGP_CASTEiJ_P0051478 Pde6c protein_coding protein_coding MGP_CASTEiJ_T0051479.1 MGP_CASTEiJ_G0024289.1 mouse_genomes_project 19 36493863 36546460 + MGP_CASTEiJ_P0051479 Pde6c protein_coding unknown_likely_coding MGP_CASTEiJ_T0006930.1 MGP_CASTEiJ_G0005703.1 mouse_genomes_project 19 59209456 59287640 + 2700089I24Rik lincRNA lincRNA MGP_CASTEiJ_T0050229.1 MGP_CASTEiJ_G0023861.1 mouse_genomes_project 19 1030691 1033970 + MGP_CASTEiJ_P0050229 Ppp1ca protein_coding protein_coding MGP_CASTEiJ_T0050278.1 MGP_CASTEiJ_G0023873.1 mouse_genomes_project 19 1480985 1484869 - MGP_CASTEiJ_P0050278 Lrfn4 protein_coding protein_coding MGP_CASTEiJ_T0050279.1 MGP_CASTEiJ_G0023873.1 mouse_genomes_project 19 1480992 1484704 - MGP_CASTEiJ_P0050279 Lrfn4 protein_coding protein_coding MGP_CASTEiJ_T0051870.1 MGP_CASTEiJ_G0024411.1 mouse_genomes_project 19 45545644 45561898 + MGP_CASTEiJ_P0051870 Borcs7 protein_coding protein_coding MGP_CASTEiJ_T0051593.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40379449 40419391 - MGP_CASTEiJ_P0051593 Mms19 protein_coding protein_coding MGP_CASTEiJ_T0051594.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40379449 40419348 - MGP_CASTEiJ_P0051594 Mms19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051595.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40382650 40402980 - Mms19 protein_coding retained_intron MGP_CASTEiJ_T0051596.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40382654 40407983 - MGP_CASTEiJ_P0051596 Mms19 protein_coding protein_coding MGP_CASTEiJ_T0051597.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40382656 40419370 - MGP_CASTEiJ_P0051597 Mms19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051598.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40382656 40419351 - MGP_CASTEiJ_P0051598 Mms19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051599.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40382822 40419366 - MGP_CASTEiJ_P0051599 Mms19 protein_coding protein_coding MGP_CASTEiJ_T0051600.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40382934 40393560 - MGP_CASTEiJ_P0051600 Mms19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051601.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40382994 40384073 - Mms19 protein_coding retained_intron MGP_CASTEiJ_T0051602.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40385237 40419373 - Mms19 protein_coding retained_intron MGP_CASTEiJ_T0051603.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40385425 40392366 - MGP_CASTEiJ_P0051603 Mms19 protein_coding protein_coding MGP_CASTEiJ_T0051604.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40385610 40386561 - Mms19 protein_coding retained_intron MGP_CASTEiJ_T0051605.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40386003 40419371 - MGP_CASTEiJ_P0051605 Mms19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051606.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40388146 40389764 - Mms19 protein_coding retained_intron MGP_CASTEiJ_T0051607.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40391519 40419364 - MGP_CASTEiJ_P0051607 Mms19 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051608.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40392878 40393589 - Mms19 protein_coding retained_intron MGP_CASTEiJ_T0051609.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40401146 40401474 - Mms19 protein_coding retained_intron MGP_CASTEiJ_T0051610.1 MGP_CASTEiJ_G0024329.1 mouse_genomes_project 19 40401354 40408002 - MGP_CASTEiJ_P0051610 Mms19 protein_coding protein_coding MGP_CASTEiJ_T0051816.1 MGP_CASTEiJ_G0024395.1 mouse_genomes_project 19 44843368 44854941 + MGP_CASTEiJ_P0051816 Nolc1 protein_coding protein_coding MGP_CASTEiJ_T0051817.1 MGP_CASTEiJ_G0024395.1 mouse_genomes_project 19 44843535 44854950 + MGP_CASTEiJ_P0051817 Nolc1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0016978.1 MGP_CASTEiJ_G0014704.1 mouse_genomes_project 19 59678791 59683455 + Gm4219 processed_transcript processed_transcript MGP_CASTEiJ_T0050336.1 MGP_CASTEiJ_G0023897.1 mouse_genomes_project 19 1990227 1994600 + MGP_CASTEiJ_P0050336 Yif1a protein_coding protein_coding MGP_CASTEiJ_T0003744.1 MGP_CASTEiJ_G0003360.1 mouse_genomes_project 19 40999152 41035117 - Gm16541 antisense antisense MGP_CASTEiJ_T0003745.1 MGP_CASTEiJ_G0003360.1 mouse_genomes_project 19 40999158 41035104 - Gm16541 antisense antisense MGP_CASTEiJ_T0003746.1 MGP_CASTEiJ_G0003360.1 mouse_genomes_project 19 41034515 41035117 - Gm16541 antisense antisense MGP_CASTEiJ_T0051116.1 MGP_CASTEiJ_G0024160.1 mouse_genomes_project 19 13109621 13375900 + MGP_CASTEiJ_P0051116 Gnaq protein_coding protein_coding MGP_CASTEiJ_T0051117.1 MGP_CASTEiJ_G0024160.1 mouse_genomes_project 19 13110083 13303894 + Gnaq protein_coding retained_intron MGP_CASTEiJ_T0051118.1 MGP_CASTEiJ_G0024160.1 mouse_genomes_project 19 13198324 13304636 + Gnaq protein_coding processed_transcript MGP_CASTEiJ_T0051466.1 MGP_CASTEiJ_G0024283.1 mouse_genomes_project 19 36013990 36025225 + MGP_CASTEiJ_P0051466 Cyp26c1 protein_coding protein_coding MGP_CASTEiJ_T0100837.1 MGP_CASTEiJ_G0037750.1 mouse_genomes_project 19 25413916 25414048 - Gm24782 snoRNA snoRNA MGP_CASTEiJ_T0050323.1 MGP_CASTEiJ_G0023889.1 mouse_genomes_project 19 1861339 1868868 + MGP_CASTEiJ_P0050323 Mrpl11 protein_coding protein_coding MGP_CASTEiJ_T0010043.1 MGP_CASTEiJ_G0008231.1 mouse_genomes_project 19 52240773 52240874 - Mir6407 miRNA miRNA MGP_CASTEiJ_T0051370.1 MGP_CASTEiJ_G0024246.1 mouse_genomes_project 19 30796933 30868360 + MGP_CASTEiJ_P0051370 Pten protein_coding protein_coding MGP_CASTEiJ_T0051371.1 MGP_CASTEiJ_G0024246.1 mouse_genomes_project 19 30797031 30843624 + Pten protein_coding retained_intron MGP_CASTEiJ_T0051372.1 MGP_CASTEiJ_G0024246.1 mouse_genomes_project 19 30852019 30858720 + Pten protein_coding retained_intron MGP_CASTEiJ_T0012994.1 MGP_CASTEiJ_G0011157.1 mouse_genomes_project 19 50946839 50947217 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0051883.1 MGP_CASTEiJ_G0024418.1 mouse_genomes_project 19 45966942 45973911 - MGP_CASTEiJ_P0051883 Usmg5 protein_coding protein_coding MGP_CASTEiJ_T0050239.1 MGP_CASTEiJ_G0023866.1 mouse_genomes_project 19 1111588 1123390 - MGP_CASTEiJ_P0050239 Ankrd13d protein_coding protein_coding MGP_CASTEiJ_T0050240.1 MGP_CASTEiJ_G0023866.1 mouse_genomes_project 19 1111588 1124350 - MGP_CASTEiJ_P0050240 Ankrd13d protein_coding protein_coding MGP_CASTEiJ_T0050241.1 MGP_CASTEiJ_G0023866.1 mouse_genomes_project 19 1111590 1124352 - MGP_CASTEiJ_P0050241 Ankrd13d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050242.1 MGP_CASTEiJ_G0023866.1 mouse_genomes_project 19 1111806 1112703 - MGP_CASTEiJ_P0050242 Ankrd13d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050243.1 MGP_CASTEiJ_G0023866.1 mouse_genomes_project 19 1114007 1122226 - MGP_CASTEiJ_P0050243 Ankrd13d protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050244.1 MGP_CASTEiJ_G0023866.1 mouse_genomes_project 19 1120679 1124352 - Ankrd13d protein_coding processed_transcript MGP_CASTEiJ_T0050245.1 MGP_CASTEiJ_G0023866.1 mouse_genomes_project 19 1121860 1124248 - MGP_CASTEiJ_P0050245 Ankrd13d protein_coding protein_coding MGP_CASTEiJ_T0051317.1 MGP_CASTEiJ_G0024228.1 mouse_genomes_project 19 27527533 27538090 + MGP_CASTEiJ_P0051317 Mlana protein_coding protein_coding MGP_CASTEiJ_T0050911.1 MGP_CASTEiJ_G0024054.1 mouse_genomes_project 19 7163766 7185554 + MGP_CASTEiJ_P0050911 Cpsf7 protein_coding protein_coding MGP_CASTEiJ_T0051742.1 MGP_CASTEiJ_G0024374.1 mouse_genomes_project 19 43649925 43662193 + MGP_CASTEiJ_P0051742 Sema4g protein_coding unknown_likely_coding MGP_CASTEiJ_T0051710.1 MGP_CASTEiJ_G0024361.1 mouse_genomes_project 19 42714553 42720513 - MGP_CASTEiJ_P0051710 Bloc1s2 protein_coding protein_coding MGP_CASTEiJ_T0050331.1 MGP_CASTEiJ_G0023896.1 mouse_genomes_project 19 1972699 1973975 - Tmem151a protein_coding processed_transcript MGP_CASTEiJ_T0050332.1 MGP_CASTEiJ_G0023896.1 mouse_genomes_project 19 1972875 1987183 - MGP_CASTEiJ_P0050332 Tmem151a protein_coding protein_coding MGP_CASTEiJ_T0050333.1 MGP_CASTEiJ_G0023896.1 mouse_genomes_project 19 1973696 1987183 - MGP_CASTEiJ_P0050333 Tmem151a protein_coding protein_coding MGP_CASTEiJ_T0050334.1 MGP_CASTEiJ_G0023896.1 mouse_genomes_project 19 1981031 1987227 - MGP_CASTEiJ_P0050334 Tmem151a protein_coding protein_coding MGP_CASTEiJ_T0050335.1 MGP_CASTEiJ_G0023896.1 mouse_genomes_project 19 1984603 1986577 - Tmem151a protein_coding processed_transcript MGP_CASTEiJ_T0016932.1 MGP_CASTEiJ_G0014692.1 mouse_genomes_project 19 3634624 3692460 - 2410152P15Rik processed_transcript processed_transcript MGP_CASTEiJ_T0050910.1 MGP_CASTEiJ_G0024053.1 mouse_genomes_project 19 7139412 7163732 - MGP_CASTEiJ_P0050910 Sdhaf2 protein_coding protein_coding MGP_CASTEiJ_T0010020.1 MGP_CASTEiJ_G0008208.1 mouse_genomes_project 19 13302257 13302370 - Mir496b miRNA miRNA MGP_CASTEiJ_T0051430.1 MGP_CASTEiJ_G0024274.1 mouse_genomes_project 19 35070674 35135047 + MGP_CASTEiJ_P0051430 Tnks2 protein_coding protein_coding MGP_CASTEiJ_T0051431.1 MGP_CASTEiJ_G0024274.1 mouse_genomes_project 19 35070846 35094742 + Tnks2 protein_coding processed_transcript MGP_CASTEiJ_T0051432.1 MGP_CASTEiJ_G0024274.1 mouse_genomes_project 19 35087203 35093814 + Tnks2 protein_coding retained_intron MGP_CASTEiJ_T0051433.1 MGP_CASTEiJ_G0024274.1 mouse_genomes_project 19 35096296 35101118 + Tnks2 protein_coding retained_intron MGP_CASTEiJ_T0051434.1 MGP_CASTEiJ_G0024274.1 mouse_genomes_project 19 35096677 35113229 + MGP_CASTEiJ_P0051434 Tnks2 protein_coding protein_coding MGP_CASTEiJ_T0051435.1 MGP_CASTEiJ_G0024274.1 mouse_genomes_project 19 35097890 35104860 + MGP_CASTEiJ_P0051435 Tnks2 protein_coding protein_coding MGP_CASTEiJ_T0051436.1 MGP_CASTEiJ_G0024274.1 mouse_genomes_project 19 35112518 35124845 + MGP_CASTEiJ_P0051436 Tnks2 protein_coding protein_coding MGP_CASTEiJ_T0051437.1 MGP_CASTEiJ_G0024274.1 mouse_genomes_project 19 35119287 35123833 + Tnks2 protein_coding retained_intron MGP_CASTEiJ_T0050404.1 MGP_CASTEiJ_G0023920.1 mouse_genomes_project 19 2437232 2438253 - MGP_CASTEiJ_P0050404 1700020D05Rik protein_coding protein_coding MGP_CASTEiJ_T0050680.1 MGP_CASTEiJ_G0023981.1 mouse_genomes_project 19 3867754 3883781 - MGP_CASTEiJ_P0050680 Plcb3 protein_coding protein_coding MGP_CASTEiJ_T0050479.1 MGP_CASTEiJ_G0023947.1 mouse_genomes_project 19 3035695 3036976 + MGP_CASTEiJ_P0050479 Znhit2 protein_coding protein_coding MGP_CASTEiJ_T0051040.1 MGP_CASTEiJ_G0024105.1 mouse_genomes_project 19 8836982 8842132 - MGP_CASTEiJ_P0051040 Olfr1426 protein_coding protein_coding MGP_CASTEiJ_T0012970.1 MGP_CASTEiJ_G0011133.1 mouse_genomes_project 19 5354957 5355745 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0099610.1 MGP_CASTEiJ_G0036523.1 mouse_genomes_project 19 43595769 43595874 + Gm25482 snRNA snRNA MGP_CASTEiJ_T0051506.1 MGP_CASTEiJ_G0024297.1 mouse_genomes_project 19 37441754 37481356 + MGP_CASTEiJ_P0051506 Cyp2c55 protein_coding protein_coding MGP_CASTEiJ_T0012993.1 MGP_CASTEiJ_G0011156.1 mouse_genomes_project 19 45525028 45526035 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0050227.1 MGP_CASTEiJ_G0023859.1 mouse_genomes_project 19 999682 1010814 - MGP_CASTEiJ_P0050227 Carns1 protein_coding protein_coding MGP_CASTEiJ_T0006882.1 MGP_CASTEiJ_G0005668.1 mouse_genomes_project 19 3663643 3665136 + Gm14968 lincRNA lincRNA MGP_CASTEiJ_T0003750.1 MGP_CASTEiJ_G0003364.1 mouse_genomes_project 19 44473817 44476627 + Gm15491 antisense antisense MGP_CASTEiJ_T0010007.1 MGP_CASTEiJ_G0008195.1 mouse_genomes_project 19 3265630 3265716 + Mir194-2 miRNA miRNA MGP_CASTEiJ_T0010031.1 MGP_CASTEiJ_G0008219.1 mouse_genomes_project 19 39252473 39252560 + Mir8092 miRNA miRNA MGP_CASTEiJ_T0099596.1 MGP_CASTEiJ_G0036509.1 mouse_genomes_project 19 11644010 11644134 - Gm26026 snRNA snRNA MGP_CASTEiJ_T0050669.1 MGP_CASTEiJ_G0023978.1 mouse_genomes_project 19 3835865 3838856 - MGP_CASTEiJ_P0050669 Tex40 protein_coding protein_coding MGP_CASTEiJ_T0051241.1 MGP_CASTEiJ_G0024209.1 mouse_genomes_project 19 24904081 24939367 + Vldlr protein_coding retained_intron MGP_CASTEiJ_T0051242.1 MGP_CASTEiJ_G0024209.1 mouse_genomes_project 19 24904617 24922464 + MGP_CASTEiJ_P0051242 Vldlr protein_coding protein_coding MGP_CASTEiJ_T0051243.1 MGP_CASTEiJ_G0024209.1 mouse_genomes_project 19 24904617 24939474 + MGP_CASTEiJ_P0051243 Vldlr protein_coding protein_coding MGP_CASTEiJ_T0051244.1 MGP_CASTEiJ_G0024209.1 mouse_genomes_project 19 24904954 24919360 + Vldlr protein_coding processed_transcript MGP_CASTEiJ_T0051245.1 MGP_CASTEiJ_G0024209.1 mouse_genomes_project 19 24904954 24939340 + MGP_CASTEiJ_P0051245 Vldlr protein_coding protein_coding MGP_CASTEiJ_T0051246.1 MGP_CASTEiJ_G0024209.1 mouse_genomes_project 19 24904954 24943850 + MGP_CASTEiJ_P0051246 Vldlr protein_coding protein_coding MGP_CASTEiJ_T0051247.1 MGP_CASTEiJ_G0024209.1 mouse_genomes_project 19 24905055 24939375 + MGP_CASTEiJ_P0051247 Vldlr protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051248.1 MGP_CASTEiJ_G0024209.1 mouse_genomes_project 19 24926393 24933424 + MGP_CASTEiJ_P0051248 Vldlr protein_coding protein_coding MGP_CASTEiJ_T0099605.1 MGP_CASTEiJ_G0036518.1 mouse_genomes_project 19 34557354 34557459 - Gm23170 snRNA snRNA MGP_CASTEiJ_T0051195.1 MGP_CASTEiJ_G0024194.1 mouse_genomes_project 19 21574534 21661930 - MGP_CASTEiJ_P0051195 Tjp2 protein_coding protein_coding MGP_CASTEiJ_T0012999.1 MGP_CASTEiJ_G0011162.1 mouse_genomes_project 19 60592452 60592820 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010010.1 MGP_CASTEiJ_G0008198.1 mouse_genomes_project 19 3577719 3577845 + Gm26460 miRNA miRNA MGP_CASTEiJ_T0051108.1 MGP_CASTEiJ_G0024158.1 mouse_genomes_project 19 12862684 12885801 - MGP_CASTEiJ_P0051108 Psat1 protein_coding protein_coding MGP_CASTEiJ_T0051109.1 MGP_CASTEiJ_G0024158.1 mouse_genomes_project 19 12863093 12885356 - MGP_CASTEiJ_P0051109 Psat1 protein_coding protein_coding MGP_CASTEiJ_T0051110.1 MGP_CASTEiJ_G0024158.1 mouse_genomes_project 19 12863096 12867701 - Psat1 protein_coding retained_intron MGP_CASTEiJ_T0051111.1 MGP_CASTEiJ_G0024158.1 mouse_genomes_project 19 12873057 12908691 - MGP_CASTEiJ_P0051111 Psat1 protein_coding protein_coding MGP_CASTEiJ_T0051112.1 MGP_CASTEiJ_G0024158.1 mouse_genomes_project 19 12874940 12876420 - Psat1 protein_coding processed_transcript MGP_CASTEiJ_T0051113.1 MGP_CASTEiJ_G0024158.1 mouse_genomes_project 19 12876485 12879530 - Psat1 protein_coding retained_intron MGP_CASTEiJ_T0051114.1 MGP_CASTEiJ_G0024158.1 mouse_genomes_project 19 12878618 12885672 - Psat1 protein_coding retained_intron MGP_CASTEiJ_T0051657.1 MGP_CASTEiJ_G0024346.1 mouse_genomes_project 19 41275991 41901436 - MGP_CASTEiJ_P0051657 Hpse2 protein_coding protein_coding MGP_CASTEiJ_T0000977.1 MGP_CASTEiJ_G0000913.1 mouse_genomes_project 19 2748695 2749152 + TEC TEC MGP_CASTEiJ_T0050274.1 MGP_CASTEiJ_G0023871.1 mouse_genomes_project 19 1352405 1354201 - MGP_CASTEiJ_P0050274 2010003K11Rik protein_coding protein_coding MGP_CASTEiJ_T0051690.1 MGP_CASTEiJ_G0024357.1 mouse_genomes_project 19 42566993 42599461 - MGP_CASTEiJ_P0051690 Cyp2c44 protein_coding protein_coding MGP_CASTEiJ_T0099592.1 MGP_CASTEiJ_G0036505.1 mouse_genomes_project 19 247912 248017 + Gm23940 snRNA snRNA MGP_CASTEiJ_T0051661.1 MGP_CASTEiJ_G0024348.1 mouse_genomes_project 19 42019302 42044478 - MGP_CASTEiJ_P0051661 Got1 protein_coding protein_coding MGP_CASTEiJ_T0051662.1 MGP_CASTEiJ_G0024348.1 mouse_genomes_project 19 42019571 42035928 - MGP_CASTEiJ_P0051662 Got1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051663.1 MGP_CASTEiJ_G0024348.1 mouse_genomes_project 19 42019717 42044439 - MGP_CASTEiJ_P0051663 Got1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051664.1 MGP_CASTEiJ_G0024348.1 mouse_genomes_project 19 42019867 42024158 - Got1 protein_coding retained_intron MGP_CASTEiJ_T0051665.1 MGP_CASTEiJ_G0024348.1 mouse_genomes_project 19 42031728 42044358 - Got1 protein_coding processed_transcript MGP_CASTEiJ_T0051973.1 MGP_CASTEiJ_G0024448.1 mouse_genomes_project 19 53271106 53362021 + MGP_CASTEiJ_P0051973 Shoc2 protein_coding protein_coding MGP_CASTEiJ_T0051974.1 MGP_CASTEiJ_G0024448.1 mouse_genomes_project 19 53271677 53362021 + MGP_CASTEiJ_P0051974 Shoc2 protein_coding protein_coding MGP_CASTEiJ_T0051368.1 MGP_CASTEiJ_G0024244.1 mouse_genomes_project 19 30644734 30697651 + MGP_CASTEiJ_P0051368 Papss2 protein_coding protein_coding MGP_CASTEiJ_T0011151.1 MGP_CASTEiJ_G0009339.1 mouse_genomes_project 19 32331346 32331505 + Gm27818 misc_RNA misc_RNA MGP_CASTEiJ_T0051404.1 MGP_CASTEiJ_G0024264.1 mouse_genomes_project 19 32708341 32717503 + MGP_CASTEiJ_P0051404 Ifit1 protein_coding protein_coding MGP_CASTEiJ_T0006913.1 MGP_CASTEiJ_G0005691.1 mouse_genomes_project 19 43983527 43996774 - Gm29595 lincRNA lincRNA MGP_CASTEiJ_T0006914.1 MGP_CASTEiJ_G0005691.1 mouse_genomes_project 19 43983536 43988908 - Gm29595 lincRNA lincRNA MGP_CASTEiJ_T0050325.1 MGP_CASTEiJ_G0023891.1 mouse_genomes_project 19 1925929 1933886 + MGP_CASTEiJ_P0050325 Slc29a2 protein_coding protein_coding MGP_CASTEiJ_T0051211.1 MGP_CASTEiJ_G0024203.1 mouse_genomes_project 19 22793611 23006058 + MGP_CASTEiJ_P0051211 Kank1 protein_coding protein_coding MGP_CASTEiJ_T0051212.1 MGP_CASTEiJ_G0024203.1 mouse_genomes_project 19 22965601 22980016 + Kank1 protein_coding processed_transcript MGP_CASTEiJ_T0051213.1 MGP_CASTEiJ_G0024203.1 mouse_genomes_project 19 22976946 22997543 + MGP_CASTEiJ_P0051213 Kank1 protein_coding protein_coding MGP_CASTEiJ_T0051214.1 MGP_CASTEiJ_G0024203.1 mouse_genomes_project 19 22993844 22996104 + Kank1 protein_coding retained_intron MGP_CASTEiJ_T0050391.1 MGP_CASTEiJ_G0023917.1 mouse_genomes_project 19 2416528 2422129 - MGP_CASTEiJ_P0050391 Mus81 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050392.1 MGP_CASTEiJ_G0023917.1 mouse_genomes_project 19 2417019 2422515 - MGP_CASTEiJ_P0050392 Mus81 protein_coding protein_coding MGP_CASTEiJ_T0050393.1 MGP_CASTEiJ_G0023917.1 mouse_genomes_project 19 2417027 2417746 - Mus81 protein_coding retained_intron MGP_CASTEiJ_T0050394.1 MGP_CASTEiJ_G0023917.1 mouse_genomes_project 19 2417038 2422048 - Mus81 protein_coding retained_intron MGP_CASTEiJ_T0050395.1 MGP_CASTEiJ_G0023917.1 mouse_genomes_project 19 2417040 2418075 - Mus81 protein_coding retained_intron MGP_CASTEiJ_T0050396.1 MGP_CASTEiJ_G0023917.1 mouse_genomes_project 19 2417041 2418079 - Mus81 protein_coding retained_intron MGP_CASTEiJ_T0050397.1 MGP_CASTEiJ_G0023917.1 mouse_genomes_project 19 2417045 2422398 - MGP_CASTEiJ_P0050397 Mus81 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050398.1 MGP_CASTEiJ_G0023917.1 mouse_genomes_project 19 2417801 2418997 - Mus81 protein_coding retained_intron MGP_CASTEiJ_T0050399.1 MGP_CASTEiJ_G0023917.1 mouse_genomes_project 19 2418323 2419922 - Mus81 protein_coding processed_transcript MGP_CASTEiJ_T0050400.1 MGP_CASTEiJ_G0023917.1 mouse_genomes_project 19 2419599 2422379 - MGP_CASTEiJ_P0050400 Mus81 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050401.1 MGP_CASTEiJ_G0023917.1 mouse_genomes_project 19 2421582 2422424 - Mus81 protein_coding retained_intron MGP_CASTEiJ_T0050878.1 MGP_CASTEiJ_G0024041.1 mouse_genomes_project 19 6589005 6617989 - MGP_CASTEiJ_P0050878 Best1 protein_coding protein_coding MGP_CASTEiJ_T0050879.1 MGP_CASTEiJ_G0024041.1 mouse_genomes_project 19 6594378 6596725 - Best1 protein_coding processed_transcript MGP_CASTEiJ_T0050687.1 MGP_CASTEiJ_G0023985.1 mouse_genomes_project 19 3905948 3910427 - MGP_CASTEiJ_P0050687 Dnajc4 protein_coding protein_coding MGP_CASTEiJ_T0050688.1 MGP_CASTEiJ_G0023985.1 mouse_genomes_project 19 3905948 3910196 - MGP_CASTEiJ_P0050688 Dnajc4 protein_coding protein_coding MGP_CASTEiJ_T0050402.1 MGP_CASTEiJ_G0023918.1 mouse_genomes_project 19 2424598 2428508 + MGP_CASTEiJ_P0050402 Cfl1 protein_coding protein_coding MGP_CASTEiJ_T0051090.1 MGP_CASTEiJ_G0024141.1 mouse_genomes_project 19 10169033 10169963 + MGP_CASTEiJ_P0051090 Olfr1469 protein_coding protein_coding MGP_CASTEiJ_T0051092.1 MGP_CASTEiJ_G0024143.1 mouse_genomes_project 19 10211038 10211983 - MGP_CASTEiJ_P0051092 protein_coding protein_coding MGP_CASTEiJ_T0012985.1 MGP_CASTEiJ_G0011148.1 mouse_genomes_project 19 25574869 25575309 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0051053.1 MGP_CASTEiJ_G0024116.1 mouse_genomes_project 19 9354648 9384998 + MGP_CASTEiJ_P0051053 Gm4952 protein_coding protein_coding MGP_CASTEiJ_T0051054.1 MGP_CASTEiJ_G0024116.1 mouse_genomes_project 19 9354690 9386376 + MGP_CASTEiJ_P0051054 Gm4952 protein_coding protein_coding MGP_CASTEiJ_T0051688.1 MGP_CASTEiJ_G0024356.1 mouse_genomes_project 19 42509309 42541020 - MGP_CASTEiJ_P0051688 Cpn1 protein_coding protein_coding MGP_CASTEiJ_T0051689.1 MGP_CASTEiJ_G0024356.1 mouse_genomes_project 19 42515015 42522918 - Cpn1 protein_coding retained_intron MGP_CASTEiJ_T0051460.1 MGP_CASTEiJ_G0024280.1 mouse_genomes_project 19 35672873 35724256 + MGP_CASTEiJ_P0051460 Kif11 protein_coding protein_coding MGP_CASTEiJ_T0051461.1 MGP_CASTEiJ_G0024280.1 mouse_genomes_project 19 35673066 35706091 + MGP_CASTEiJ_P0051461 Kif11 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052011.1 MGP_CASTEiJ_G0024457.1 mouse_genomes_project 19 55776376 55810453 + MGP_CASTEiJ_P0052011 Habp2 protein_coding protein_coding MGP_CASTEiJ_T0052012.1 MGP_CASTEiJ_G0024457.1 mouse_genomes_project 19 55777148 55811184 + MGP_CASTEiJ_P0052012 Habp2 protein_coding protein_coding MGP_CASTEiJ_T0052013.1 MGP_CASTEiJ_G0024457.1 mouse_genomes_project 19 55777162 55800777 + Habp2 protein_coding processed_transcript MGP_CASTEiJ_T0052014.1 MGP_CASTEiJ_G0024457.1 mouse_genomes_project 19 55777222 55806674 + MGP_CASTEiJ_P0052014 Habp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052015.1 MGP_CASTEiJ_G0024457.1 mouse_genomes_project 19 55777222 55809998 + MGP_CASTEiJ_P0052015 Habp2 protein_coding protein_coding MGP_CASTEiJ_T0052016.1 MGP_CASTEiJ_G0024457.1 mouse_genomes_project 19 55800602 55806796 + MGP_CASTEiJ_P0052016 Habp2 protein_coding protein_coding MGP_CASTEiJ_T0052017.1 MGP_CASTEiJ_G0024457.1 mouse_genomes_project 19 55801732 55809992 + MGP_CASTEiJ_P0052017 Habp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051960.1 MGP_CASTEiJ_G0024443.1 mouse_genomes_project 19 52821695 52836515 + MGP_CASTEiJ_P0051960 Dusp5 protein_coding protein_coding MGP_CASTEiJ_T0050887.1 MGP_CASTEiJ_G0024046.1 mouse_genomes_project 19 6834004 6838798 - MGP_CASTEiJ_P0050887 Fen1 protein_coding protein_coding MGP_CASTEiJ_T0050888.1 MGP_CASTEiJ_G0024046.1 mouse_genomes_project 19 6834010 6838571 - MGP_CASTEiJ_P0050888 Fen1 protein_coding protein_coding MGP_CASTEiJ_T0050889.1 MGP_CASTEiJ_G0024046.1 mouse_genomes_project 19 6834010 6838697 - MGP_CASTEiJ_P0050889 Fen1 protein_coding protein_coding MGP_CASTEiJ_T0050890.1 MGP_CASTEiJ_G0024046.1 mouse_genomes_project 19 6834014 6838522 - MGP_CASTEiJ_P0050890 Fen1 protein_coding protein_coding MGP_CASTEiJ_T0006898.1 MGP_CASTEiJ_G0005680.1 mouse_genomes_project 19 27317337 27355324 - A930007I19Rik lincRNA lincRNA MGP_CASTEiJ_T0006899.1 MGP_CASTEiJ_G0005680.1 mouse_genomes_project 19 27317916 27356489 - A930007I19Rik lincRNA lincRNA MGP_CASTEiJ_T0006900.1 MGP_CASTEiJ_G0005680.1 mouse_genomes_project 19 27337134 27355319 - A930007I19Rik lincRNA lincRNA MGP_CASTEiJ_T0050978.1 MGP_CASTEiJ_G0024080.1 mouse_genomes_project 19 7896181 7914219 - MGP_CASTEiJ_P0050978 Ms4a1 protein_coding protein_coding MGP_CASTEiJ_T0050979.1 MGP_CASTEiJ_G0024080.1 mouse_genomes_project 19 7897365 7901186 - Ms4a1 protein_coding retained_intron MGP_CASTEiJ_T0050980.1 MGP_CASTEiJ_G0024080.1 mouse_genomes_project 19 7900491 7914123 - Ms4a1 protein_coding retained_intron MGP_CASTEiJ_T0051078.1 MGP_CASTEiJ_G0024129.1 mouse_genomes_project 19 9708086 9709034 + MGP_CASTEiJ_P0051078 Olfr1449 protein_coding protein_coding MGP_CASTEiJ_T0051382.1 MGP_CASTEiJ_G0024253.1 mouse_genomes_project 19 32032843 32065668 + MGP_CASTEiJ_P0051382 Lipk protein_coding protein_coding MGP_CASTEiJ_T0016959.1 MGP_CASTEiJ_G0014696.1 mouse_genomes_project 19 8149709 8166755 - BE692007 processed_transcript antisense MGP_CASTEiJ_T0016960.1 MGP_CASTEiJ_G0014696.1 mouse_genomes_project 19 8161172 8166756 - BE692007 processed_transcript antisense MGP_CASTEiJ_T0016961.1 MGP_CASTEiJ_G0014696.1 mouse_genomes_project 19 8161290 8166713 - BE692007 processed_transcript retained_intron MGP_CASTEiJ_T0099598.1 MGP_CASTEiJ_G0036511.1 mouse_genomes_project 19 14980658 14980761 - Gm22880 snRNA snRNA MGP_CASTEiJ_T0051956.1 MGP_CASTEiJ_G0024440.1 mouse_genomes_project 19 52573333 52648265 + MGP_CASTEiJ_P0051956 Mxi1 protein_coding protein_coding MGP_CASTEiJ_T0051957.1 MGP_CASTEiJ_G0024440.1 mouse_genomes_project 19 52596899 52645758 + MGP_CASTEiJ_P0051957 Mxi1 protein_coding protein_coding MGP_CASTEiJ_T0100831.1 MGP_CASTEiJ_G0037744.1 mouse_genomes_project 19 10501605 10501737 - Gm24124 snoRNA snoRNA MGP_CASTEiJ_T0050280.1 MGP_CASTEiJ_G0023874.1 mouse_genomes_project 19 1491751 1494822 - MGP_CASTEiJ_P0050280 Rce1 protein_coding protein_coding MGP_CASTEiJ_T0050281.1 MGP_CASTEiJ_G0023874.1 mouse_genomes_project 19 1493730 1494855 - MGP_CASTEiJ_P0050281 Rce1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052077.1 MGP_CASTEiJ_G0024470.1 mouse_genomes_project 19 57034142 57073621 + MGP_CASTEiJ_P0052077 Trub1 protein_coding protein_coding MGP_CASTEiJ_T0052078.1 MGP_CASTEiJ_G0024470.1 mouse_genomes_project 19 57034142 57071491 + MGP_CASTEiJ_P0052078 Trub1 protein_coding protein_coding MGP_CASTEiJ_T0010042.1 MGP_CASTEiJ_G0008230.1 mouse_genomes_project 19 49209734 49209859 + Gm27749 miRNA miRNA MGP_CASTEiJ_T0051160.1 MGP_CASTEiJ_G0024178.1 mouse_genomes_project 19 18555503 18568451 + MGP_CASTEiJ_P0051160 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051161.1 MGP_CASTEiJ_G0024178.1 mouse_genomes_project 19 18556066 18565058 + MGP_CASTEiJ_P0051161 protein_coding protein_coding MGP_CASTEiJ_T0051162.1 MGP_CASTEiJ_G0024178.1 mouse_genomes_project 19 18558766 18568682 + protein_coding retained_intron MGP_CASTEiJ_T0051163.1 MGP_CASTEiJ_G0024178.1 mouse_genomes_project 19 18558826 18571934 + protein_coding retained_intron MGP_CASTEiJ_T0051164.1 MGP_CASTEiJ_G0024178.1 mouse_genomes_project 19 18564453 18570260 + MGP_CASTEiJ_P0051164 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051398.1 MGP_CASTEiJ_G0024261.1 mouse_genomes_project 19 32538114 32577674 - MGP_CASTEiJ_P0051398 Lipa protein_coding protein_coding MGP_CASTEiJ_T0051399.1 MGP_CASTEiJ_G0024261.1 mouse_genomes_project 19 32538114 32577674 - MGP_CASTEiJ_P0051399 Lipa protein_coding protein_coding MGP_CASTEiJ_T0051038.1 MGP_CASTEiJ_G0024103.1 mouse_genomes_project 19 8685881 8713783 + MGP_CASTEiJ_P0051038 Osbp protein_coding protein_coding MGP_CASTEiJ_T0100836.1 MGP_CASTEiJ_G0037749.1 mouse_genomes_project 19 22716289 22716421 - Gm24252 snoRNA snoRNA MGP_CASTEiJ_T0012981.1 MGP_CASTEiJ_G0011144.1 mouse_genomes_project 19 13402364 13403152 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0051852.1 MGP_CASTEiJ_G0024405.1 mouse_genomes_project 19 45204377 45306542 + MGP_CASTEiJ_P0051852 Sufu protein_coding protein_coding MGP_CASTEiJ_T0051853.1 MGP_CASTEiJ_G0024405.1 mouse_genomes_project 19 45204399 45303798 + MGP_CASTEiJ_P0051853 Sufu protein_coding protein_coding MGP_CASTEiJ_T0051854.1 MGP_CASTEiJ_G0024405.1 mouse_genomes_project 19 45204485 45269444 + MGP_CASTEiJ_P0051854 Sufu protein_coding protein_coding MGP_CASTEiJ_T0051855.1 MGP_CASTEiJ_G0024405.1 mouse_genomes_project 19 45204507 45292876 + MGP_CASTEiJ_P0051855 Sufu protein_coding protein_coding MGP_CASTEiJ_T0051856.1 MGP_CASTEiJ_G0024405.1 mouse_genomes_project 19 45271640 45291523 + Sufu protein_coding processed_transcript MGP_CASTEiJ_T0051857.1 MGP_CASTEiJ_G0024405.1 mouse_genomes_project 19 45300837 45303732 + Sufu protein_coding retained_intron MGP_CASTEiJ_T0050157.1 MGP_CASTEiJ_G0023843.1 mouse_genomes_project 19 810967 820725 + MGP_CASTEiJ_P0050157 Tbx10 protein_coding protein_coding MGP_CASTEiJ_T0051103.1 MGP_CASTEiJ_G0024154.1 mouse_genomes_project 19 10751924 10753775 + MGP_CASTEiJ_P0051103 Olfr1502 protein_coding protein_coding MGP_CASTEiJ_T0051736.1 MGP_CASTEiJ_G0024371.1 mouse_genomes_project 19 43183763 43184869 + Hif1an protein_coding retained_intron MGP_CASTEiJ_T0051737.1 MGP_CASTEiJ_G0024371.1 mouse_genomes_project 19 43183763 43197229 + MGP_CASTEiJ_P0051737 Hif1an protein_coding protein_coding MGP_CASTEiJ_T0052108.1 MGP_CASTEiJ_G0024485.1 mouse_genomes_project 19 59170885 59177842 + MGP_CASTEiJ_P0052108 Emx2 protein_coding protein_coding MGP_CASTEiJ_T0052109.1 MGP_CASTEiJ_G0024485.1 mouse_genomes_project 19 59172033 59177838 + MGP_CASTEiJ_P0052109 Emx2 protein_coding protein_coding MGP_CASTEiJ_T0052110.1 MGP_CASTEiJ_G0024485.1 mouse_genomes_project 19 59175291 59176697 + Emx2 protein_coding processed_transcript MGP_CASTEiJ_T0051218.1 MGP_CASTEiJ_G0024205.1 mouse_genomes_project 19 23211897 23225355 + MGP_CASTEiJ_P0051218 Dmrt3 protein_coding protein_coding MGP_CASTEiJ_T0051717.1 MGP_CASTEiJ_G0024365.1 mouse_genomes_project 19 42912220 42913859 + Scd4 protein_coding retained_intron MGP_CASTEiJ_T0051718.1 MGP_CASTEiJ_G0024365.1 mouse_genomes_project 19 42912220 42928106 + MGP_CASTEiJ_P0051718 Scd4 protein_coding protein_coding MGP_CASTEiJ_T0050150.1 MGP_CASTEiJ_G0023839.1 mouse_genomes_project 19 713612 730723 - MGP_CASTEiJ_P0050150 Aldh3b1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050464.1 MGP_CASTEiJ_G0023941.1 mouse_genomes_project 19 2928283 2950502 - MGP_CASTEiJ_P0050464 Slc22a20 protein_coding protein_coding MGP_CASTEiJ_T0010046.1 MGP_CASTEiJ_G0008234.1 mouse_genomes_project 19 58599554 58599641 - Mir3086 miRNA miRNA MGP_CASTEiJ_T0050938.1 MGP_CASTEiJ_G0024067.1 mouse_genomes_project 19 7529178 7541788 - MGP_CASTEiJ_P0050938 Tmem109 protein_coding protein_coding MGP_CASTEiJ_T0050939.1 MGP_CASTEiJ_G0024067.1 mouse_genomes_project 19 7530352 7538925 - MGP_CASTEiJ_P0050939 Tmem109 protein_coding protein_coding MGP_CASTEiJ_T0050940.1 MGP_CASTEiJ_G0024067.1 mouse_genomes_project 19 7530636 7533243 - Tmem109 protein_coding retained_intron MGP_CASTEiJ_T0050941.1 MGP_CASTEiJ_G0024067.1 mouse_genomes_project 19 7530691 7541788 - MGP_CASTEiJ_P0050941 Tmem109 protein_coding protein_coding MGP_CASTEiJ_T0050942.1 MGP_CASTEiJ_G0024067.1 mouse_genomes_project 19 7532433 7541490 - Tmem109 protein_coding retained_intron MGP_CASTEiJ_T0050943.1 MGP_CASTEiJ_G0024067.1 mouse_genomes_project 19 7532747 7541510 - MGP_CASTEiJ_P0050943 Tmem109 protein_coding protein_coding MGP_CASTEiJ_T0050944.1 MGP_CASTEiJ_G0024067.1 mouse_genomes_project 19 7532765 7541477 - MGP_CASTEiJ_P0050944 Tmem109 protein_coding protein_coding MGP_CASTEiJ_T0050945.1 MGP_CASTEiJ_G0024067.1 mouse_genomes_project 19 7539056 7541477 - Tmem109 protein_coding processed_transcript MGP_CASTEiJ_T0050823.1 MGP_CASTEiJ_G0024021.1 mouse_genomes_project 19 5612993 5624074 + MGP_CASTEiJ_P0050823 Bscl2 protein_coding protein_coding MGP_CASTEiJ_T0050824.1 MGP_CASTEiJ_G0024021.1 mouse_genomes_project 19 5613213 5615757 + Bscl2 protein_coding processed_transcript MGP_CASTEiJ_T0050825.1 MGP_CASTEiJ_G0024021.1 mouse_genomes_project 19 5613255 5624058 + MGP_CASTEiJ_P0050825 Bscl2 protein_coding protein_coding MGP_CASTEiJ_T0050826.1 MGP_CASTEiJ_G0024021.1 mouse_genomes_project 19 5614841 5624057 + MGP_CASTEiJ_P0050826 Bscl2 protein_coding protein_coding MGP_CASTEiJ_T0050827.1 MGP_CASTEiJ_G0024021.1 mouse_genomes_project 19 5614886 5624058 + Bscl2 protein_coding retained_intron MGP_CASTEiJ_T0050828.1 MGP_CASTEiJ_G0024021.1 mouse_genomes_project 19 5614903 5624030 + MGP_CASTEiJ_P0050828 Bscl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050829.1 MGP_CASTEiJ_G0024021.1 mouse_genomes_project 19 5616031 5624057 + MGP_CASTEiJ_P0050829 Bscl2 protein_coding protein_coding MGP_CASTEiJ_T0050830.1 MGP_CASTEiJ_G0024021.1 mouse_genomes_project 19 5616047 5624057 + Bscl2 protein_coding retained_intron MGP_CASTEiJ_T0050831.1 MGP_CASTEiJ_G0024021.1 mouse_genomes_project 19 5616047 5624057 + Bscl2 protein_coding retained_intron MGP_CASTEiJ_T0050832.1 MGP_CASTEiJ_G0024021.1 mouse_genomes_project 19 5621699 5624015 + MGP_CASTEiJ_P0050832 Bscl2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051073.1 MGP_CASTEiJ_G0024124.1 mouse_genomes_project 19 9632462 9633492 + MGP_CASTEiJ_P0051073 Olfr1444 protein_coding protein_coding MGP_CASTEiJ_T0050876.1 MGP_CASTEiJ_G0024039.1 mouse_genomes_project 19 6471392 6499537 - MGP_CASTEiJ_P0050876 Incenp protein_coding protein_coding MGP_CASTEiJ_T0050802.1 MGP_CASTEiJ_G0024015.1 mouse_genomes_project 19 5545017 5546966 - MGP_CASTEiJ_P0050802 Taf6l protein_coding protein_coding MGP_CASTEiJ_T0050803.1 MGP_CASTEiJ_G0024015.1 mouse_genomes_project 19 5546852 5559985 - MGP_CASTEiJ_P0050803 Taf6l protein_coding protein_coding MGP_CASTEiJ_T0050804.1 MGP_CASTEiJ_G0024015.1 mouse_genomes_project 19 5546985 5549452 - Taf6l protein_coding retained_intron MGP_CASTEiJ_T0050805.1 MGP_CASTEiJ_G0024015.1 mouse_genomes_project 19 5546990 5559926 - MGP_CASTEiJ_P0050805 Taf6l protein_coding protein_coding MGP_CASTEiJ_T0050806.1 MGP_CASTEiJ_G0024015.1 mouse_genomes_project 19 5546992 5559985 - MGP_CASTEiJ_P0050806 Taf6l protein_coding protein_coding MGP_CASTEiJ_T0050807.1 MGP_CASTEiJ_G0024015.1 mouse_genomes_project 19 5546994 5560086 - MGP_CASTEiJ_P0050807 Taf6l protein_coding protein_coding MGP_CASTEiJ_T0050808.1 MGP_CASTEiJ_G0024015.1 mouse_genomes_project 19 5547027 5557664 - MGP_CASTEiJ_P0050808 Taf6l protein_coding protein_coding MGP_CASTEiJ_T0050809.1 MGP_CASTEiJ_G0024015.1 mouse_genomes_project 19 5547027 5557664 - MGP_CASTEiJ_P0050809 Taf6l protein_coding protein_coding MGP_CASTEiJ_T0050810.1 MGP_CASTEiJ_G0024015.1 mouse_genomes_project 19 5547929 5552852 - Taf6l protein_coding retained_intron MGP_CASTEiJ_T0050811.1 MGP_CASTEiJ_G0024015.1 mouse_genomes_project 19 5551716 5559950 - Taf6l protein_coding retained_intron MGP_CASTEiJ_T0050812.1 MGP_CASTEiJ_G0024015.1 mouse_genomes_project 19 5552352 5555988 - Taf6l protein_coding processed_transcript MGP_CASTEiJ_T0050813.1 MGP_CASTEiJ_G0024015.1 mouse_genomes_project 19 5552378 5556342 - Taf6l protein_coding retained_intron MGP_CASTEiJ_T0050814.1 MGP_CASTEiJ_G0024015.1 mouse_genomes_project 19 5555475 5559934 - Taf6l protein_coding retained_intron MGP_CASTEiJ_T0051574.1 MGP_CASTEiJ_G0024322.1 mouse_genomes_project 19 40003207 40156888 - MGP_CASTEiJ_P0051574 Slit1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051575.1 MGP_CASTEiJ_G0024322.1 mouse_genomes_project 19 40003214 40156884 - MGP_CASTEiJ_P0051575 Slit1 protein_coding protein_coding MGP_CASTEiJ_T0051576.1 MGP_CASTEiJ_G0024322.1 mouse_genomes_project 19 40003216 40157057 - MGP_CASTEiJ_P0051576 Slit1 protein_coding protein_coding MGP_CASTEiJ_T0051577.1 MGP_CASTEiJ_G0024322.1 mouse_genomes_project 19 40003408 40156884 - MGP_CASTEiJ_P0051577 Slit1 protein_coding protein_coding MGP_CASTEiJ_T0051578.1 MGP_CASTEiJ_G0024322.1 mouse_genomes_project 19 40007171 40013248 - Slit1 protein_coding retained_intron MGP_CASTEiJ_T0051579.1 MGP_CASTEiJ_G0024322.1 mouse_genomes_project 19 40053442 40156878 - MGP_CASTEiJ_P0051579 Slit1 protein_coding protein_coding MGP_CASTEiJ_T0050977.1 MGP_CASTEiJ_G0024079.1 mouse_genomes_project 19 7869837 7879483 - MGP_CASTEiJ_P0050977 Ms4a12 protein_coding protein_coding MGP_CASTEiJ_T0051871.1 MGP_CASTEiJ_G0024412.1 mouse_genomes_project 19 45568805 45607933 + MGP_CASTEiJ_P0051871 As3mt protein_coding protein_coding MGP_CASTEiJ_T0050550.1 MGP_CASTEiJ_G0023963.1 mouse_genomes_project 19 3277629 3300779 + MGP_CASTEiJ_P0050550 Ehd1 protein_coding protein_coding MGP_CASTEiJ_T0050551.1 MGP_CASTEiJ_G0023963.1 mouse_genomes_project 19 3277829 3282299 + Ehd1 protein_coding retained_intron MGP_CASTEiJ_T0050552.1 MGP_CASTEiJ_G0023963.1 mouse_genomes_project 19 3294925 3298550 + Ehd1 protein_coding retained_intron MGP_CASTEiJ_T0050553.1 MGP_CASTEiJ_G0023963.1 mouse_genomes_project 19 3298586 3299033 + Ehd1 protein_coding processed_transcript MGP_CASTEiJ_T0051589.1 MGP_CASTEiJ_G0024327.1 mouse_genomes_project 19 40355062 40364955 - MGP_CASTEiJ_P0051589 Exosc1 protein_coding protein_coding MGP_CASTEiJ_T0051590.1 MGP_CASTEiJ_G0024327.1 mouse_genomes_project 19 40355062 40364955 - MGP_CASTEiJ_P0051590 Exosc1 protein_coding protein_coding MGP_CASTEiJ_T0051796.1 MGP_CASTEiJ_G0024393.1 mouse_genomes_project 19 44793666 44806311 - MGP_CASTEiJ_P0051796 Ldb1 protein_coding protein_coding MGP_CASTEiJ_T0051797.1 MGP_CASTEiJ_G0024393.1 mouse_genomes_project 19 44793667 44800713 - MGP_CASTEiJ_P0051797 Ldb1 protein_coding protein_coding MGP_CASTEiJ_T0051798.1 MGP_CASTEiJ_G0024393.1 mouse_genomes_project 19 44793689 44806308 - MGP_CASTEiJ_P0051798 Ldb1 protein_coding protein_coding MGP_CASTEiJ_T0051799.1 MGP_CASTEiJ_G0024393.1 mouse_genomes_project 19 44793762 44806307 - MGP_CASTEiJ_P0051799 Ldb1 protein_coding protein_coding MGP_CASTEiJ_T0051800.1 MGP_CASTEiJ_G0024393.1 mouse_genomes_project 19 44793762 44806011 - MGP_CASTEiJ_P0051800 Ldb1 protein_coding protein_coding MGP_CASTEiJ_T0051801.1 MGP_CASTEiJ_G0024393.1 mouse_genomes_project 19 44794818 44795955 - Ldb1 protein_coding retained_intron MGP_CASTEiJ_T0051802.1 MGP_CASTEiJ_G0024393.1 mouse_genomes_project 19 44795046 44805951 - MGP_CASTEiJ_P0051802 Ldb1 protein_coding protein_coding MGP_CASTEiJ_T0051803.1 MGP_CASTEiJ_G0024393.1 mouse_genomes_project 19 44795128 44797110 - Ldb1 protein_coding retained_intron MGP_CASTEiJ_T0050305.1 MGP_CASTEiJ_G0023883.1 mouse_genomes_project 19 1744991 1750782 + MGP_CASTEiJ_P0050305 Ctsf protein_coding protein_coding MGP_CASTEiJ_T0050373.1 MGP_CASTEiJ_G0023913.1 mouse_genomes_project 19 2386297 2386906 - MGP_CASTEiJ_P0050373 Ccdc85b protein_coding protein_coding MGP_CASTEiJ_T0051542.1 MGP_CASTEiJ_G0024309.1 mouse_genomes_project 19 38936032 38953137 - MGP_CASTEiJ_P0051542 Tctn3 protein_coding protein_coding MGP_CASTEiJ_T0051543.1 MGP_CASTEiJ_G0024309.1 mouse_genomes_project 19 38946004 38953107 - MGP_CASTEiJ_P0051543 Tctn3 protein_coding protein_coding MGP_CASTEiJ_T0051544.1 MGP_CASTEiJ_G0024309.1 mouse_genomes_project 19 38948011 38953104 - MGP_CASTEiJ_P0051544 Tctn3 protein_coding protein_coding MGP_CASTEiJ_T0051545.1 MGP_CASTEiJ_G0024309.1 mouse_genomes_project 19 38952028 38953092 - Tctn3 protein_coding retained_intron MGP_CASTEiJ_T0010011.1 MGP_CASTEiJ_G0008199.1 mouse_genomes_project 19 3736993 3737052 - Mir5046 miRNA miRNA MGP_CASTEiJ_T0012974.1 MGP_CASTEiJ_G0011137.1 mouse_genomes_project 19 9327074 9327666 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0051851.1 MGP_CASTEiJ_G0024404.1 mouse_genomes_project 19 45179197 45203213 - MGP_CASTEiJ_P0051851 Actr1a protein_coding protein_coding MGP_CASTEiJ_T0051465.1 MGP_CASTEiJ_G0024282.1 mouse_genomes_project 19 35866368 36011645 + MGP_CASTEiJ_P0051465 Exoc6 protein_coding protein_coding MGP_CASTEiJ_T0051744.1 MGP_CASTEiJ_G0024376.1 mouse_genomes_project 19 43665170 43671216 + MGP_CASTEiJ_P0051744 Peo1 protein_coding protein_coding MGP_CASTEiJ_T0003751.1 MGP_CASTEiJ_G0003365.1 mouse_genomes_project 19 46437147 46440746 + Gm19557 antisense antisense MGP_CASTEiJ_T0051942.1 MGP_CASTEiJ_G0024438.1 mouse_genomes_project 19 52178724 52276157 - MGP_CASTEiJ_P0051942 Xpnpep1 protein_coding protein_coding MGP_CASTEiJ_T0051943.1 MGP_CASTEiJ_G0024438.1 mouse_genomes_project 19 52181442 52276245 - MGP_CASTEiJ_P0051943 Xpnpep1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051944.1 MGP_CASTEiJ_G0024438.1 mouse_genomes_project 19 52221128 52251285 - Xpnpep1 protein_coding processed_transcript MGP_CASTEiJ_T0051945.1 MGP_CASTEiJ_G0024438.1 mouse_genomes_project 19 52221129 52277796 - MGP_CASTEiJ_P0051945 Xpnpep1 protein_coding protein_coding MGP_CASTEiJ_T0051946.1 MGP_CASTEiJ_G0024438.1 mouse_genomes_project 19 52225413 52226684 - Xpnpep1 protein_coding retained_intron MGP_CASTEiJ_T0051947.1 MGP_CASTEiJ_G0024438.1 mouse_genomes_project 19 52237994 52245477 - Xpnpep1 protein_coding processed_transcript MGP_CASTEiJ_T0051948.1 MGP_CASTEiJ_G0024438.1 mouse_genomes_project 19 52240189 52251120 - Xpnpep1 protein_coding processed_transcript MGP_CASTEiJ_T0051949.1 MGP_CASTEiJ_G0024438.1 mouse_genomes_project 19 52242299 52243721 - Xpnpep1 protein_coding retained_intron MGP_CASTEiJ_T0051950.1 MGP_CASTEiJ_G0024438.1 mouse_genomes_project 19 52242328 52276164 - MGP_CASTEiJ_P0051950 Xpnpep1 protein_coding protein_coding MGP_CASTEiJ_T0051951.1 MGP_CASTEiJ_G0024438.1 mouse_genomes_project 19 52248411 52264335 - Xpnpep1 protein_coding processed_transcript MGP_CASTEiJ_T0051952.1 MGP_CASTEiJ_G0024438.1 mouse_genomes_project 19 52264684 52276168 - Xpnpep1 protein_coding processed_transcript MGP_CASTEiJ_T0050877.1 MGP_CASTEiJ_G0024040.1 mouse_genomes_project 19 6586490 6588924 + MGP_CASTEiJ_P0050877 Fth1 protein_coding protein_coding MGP_CASTEiJ_T0010048.1 MGP_CASTEiJ_G0008236.1 mouse_genomes_project 19 60546122 60546191 - Mir3084-2 miRNA miRNA MGP_CASTEiJ_T0016967.1 MGP_CASTEiJ_G0014701.1 mouse_genomes_project 19 34816170 34919798 - 1500017E21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016968.1 MGP_CASTEiJ_G0014701.1 mouse_genomes_project 19 34821505 34898537 - 1500017E21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016969.1 MGP_CASTEiJ_G0014701.1 mouse_genomes_project 19 34821517 34831354 - 1500017E21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016970.1 MGP_CASTEiJ_G0014701.1 mouse_genomes_project 19 34821522 34831334 - 1500017E21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016971.1 MGP_CASTEiJ_G0014701.1 mouse_genomes_project 19 34851853 34864267 - 1500017E21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016972.1 MGP_CASTEiJ_G0014701.1 mouse_genomes_project 19 34853983 34898331 - 1500017E21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016973.1 MGP_CASTEiJ_G0014701.1 mouse_genomes_project 19 34864110 34898390 - 1500017E21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0016974.1 MGP_CASTEiJ_G0014701.1 mouse_genomes_project 19 34864279 34898386 - 1500017E21Rik processed_transcript processed_transcript MGP_CASTEiJ_T0051020.1 MGP_CASTEiJ_G0024093.1 mouse_genomes_project 19 8316628 8327929 - MGP_CASTEiJ_P0051020 Ms4a3 protein_coding protein_coding MGP_CASTEiJ_T0051021.1 MGP_CASTEiJ_G0024093.1 mouse_genomes_project 19 8316633 8327958 - MGP_CASTEiJ_P0051021 Ms4a3 protein_coding protein_coding MGP_CASTEiJ_T0051022.1 MGP_CASTEiJ_G0024093.1 mouse_genomes_project 19 8319036 8327975 - Ms4a3 protein_coding retained_intron MGP_CASTEiJ_T0051381.1 MGP_CASTEiJ_G0024252.1 mouse_genomes_project 19 31978958 31999246 + MGP_CASTEiJ_P0051381 Lipf protein_coding protein_coding MGP_CASTEiJ_T0050919.1 MGP_CASTEiJ_G0024057.1 mouse_genomes_project 19 7216431 7227118 + MGP_CASTEiJ_P0050919 Cyb561a3 protein_coding protein_coding MGP_CASTEiJ_T0051795.1 MGP_CASTEiJ_G0024392.1 mouse_genomes_project 19 44759247 44761943 + MGP_CASTEiJ_P0051795 Hps6 protein_coding protein_coding MGP_CASTEiJ_T0011149.1 MGP_CASTEiJ_G0009337.1 mouse_genomes_project 19 28635186 28635504 + Gm23426 misc_RNA misc_RNA MGP_CASTEiJ_T0051762.1 MGP_CASTEiJ_G0024384.1 mouse_genomes_project 19 44258067 44266084 - MGP_CASTEiJ_P0051762 Poll protein_coding protein_coding MGP_CASTEiJ_T0051591.1 MGP_CASTEiJ_G0024328.1 mouse_genomes_project 19 40365112 40382541 + MGP_CASTEiJ_P0051591 Zdhhc16 protein_coding protein_coding MGP_CASTEiJ_T0051592.1 MGP_CASTEiJ_G0024328.1 mouse_genomes_project 19 40365126 40382549 + MGP_CASTEiJ_P0051592 Zdhhc16 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050300.1 MGP_CASTEiJ_G0023880.1 mouse_genomes_project 19 1684913 1696562 - MGP_CASTEiJ_P0050300 Rbm14 protein_coding protein_coding MGP_CASTEiJ_T0050301.1 MGP_CASTEiJ_G0023880.1 mouse_genomes_project 19 1685266 1696513 - MGP_CASTEiJ_P0050301 Rbm14 protein_coding protein_coding MGP_CASTEiJ_T0050302.1 MGP_CASTEiJ_G0023880.1 mouse_genomes_project 19 1686121 1696440 - MGP_CASTEiJ_P0050302 Rbm14 protein_coding protein_coding MGP_CASTEiJ_T0051406.1 MGP_CASTEiJ_G0024266.1 mouse_genomes_project 19 32888139 32961131 - MGP_CASTEiJ_P0051406 Pank1 protein_coding protein_coding MGP_CASTEiJ_T0051407.1 MGP_CASTEiJ_G0024266.1 mouse_genomes_project 19 32888140 32959592 - MGP_CASTEiJ_P0051407 Pank1 protein_coding protein_coding MGP_CASTEiJ_T0051299.1 MGP_CASTEiJ_G0024225.1 mouse_genomes_project 19 27242960 27299792 + MGP_CASTEiJ_P0051299 Pdcd1lg2 protein_coding protein_coding MGP_CASTEiJ_T0051417.1 MGP_CASTEiJ_G0024271.1 mouse_genomes_project 19 34550257 34646464 + MGP_CASTEiJ_P0051417 Pcgf5 protein_coding protein_coding MGP_CASTEiJ_T0051418.1 MGP_CASTEiJ_G0024271.1 mouse_genomes_project 19 34589620 34646464 + MGP_CASTEiJ_P0051418 Pcgf5 protein_coding protein_coding MGP_CASTEiJ_T0051419.1 MGP_CASTEiJ_G0024271.1 mouse_genomes_project 19 34589644 34645940 + MGP_CASTEiJ_P0051419 Pcgf5 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051159.1 MGP_CASTEiJ_G0024177.1 mouse_genomes_project 19 18050917 18228327 - MGP_CASTEiJ_P0051159 Tmc1 protein_coding protein_coding MGP_CASTEiJ_T0098748.1 MGP_CASTEiJ_G0035679.1 mouse_genomes_project 19 8384503 8384642 + Gm26183 scaRNA scaRNA MGP_CASTEiJ_T0051452.1 MGP_CASTEiJ_G0024278.1 mouse_genomes_project 19 35478551 35495860 + MGP_CASTEiJ_P0051452 March5 protein_coding protein_coding MGP_CASTEiJ_T0051453.1 MGP_CASTEiJ_G0024278.1 mouse_genomes_project 19 35478588 35495430 + MGP_CASTEiJ_P0051453 March5 protein_coding protein_coding MGP_CASTEiJ_T0051454.1 MGP_CASTEiJ_G0024278.1 mouse_genomes_project 19 35478596 35488560 + March5 protein_coding retained_intron MGP_CASTEiJ_T0051389.1 MGP_CASTEiJ_G0024257.1 mouse_genomes_project 19 32219406 32267229 + MGP_CASTEiJ_P0051389 Stambpl1 protein_coding protein_coding MGP_CASTEiJ_T0051390.1 MGP_CASTEiJ_G0024257.1 mouse_genomes_project 19 32219999 32258347 + MGP_CASTEiJ_P0051390 Stambpl1 protein_coding protein_coding MGP_CASTEiJ_T0051391.1 MGP_CASTEiJ_G0024257.1 mouse_genomes_project 19 32245119 32262757 + Stambpl1 protein_coding retained_intron MGP_CASTEiJ_T0051392.1 MGP_CASTEiJ_G0024257.1 mouse_genomes_project 19 32245308 32267225 + MGP_CASTEiJ_P0051392 Stambpl1 protein_coding protein_coding MGP_CASTEiJ_T0051393.1 MGP_CASTEiJ_G0024257.1 mouse_genomes_project 19 32259610 32261209 + Stambpl1 protein_coding processed_transcript MGP_CASTEiJ_T0051383.1 MGP_CASTEiJ_G0024254.1 mouse_genomes_project 19 32093712 32122054 + MGP_CASTEiJ_P0051383 Lipn protein_coding protein_coding MGP_CASTEiJ_T0051384.1 MGP_CASTEiJ_G0024254.1 mouse_genomes_project 19 32093732 32103228 + MGP_CASTEiJ_P0051384 Lipn protein_coding protein_coding MGP_CASTEiJ_T0051385.1 MGP_CASTEiJ_G0024254.1 mouse_genomes_project 19 32093883 32116807 + MGP_CASTEiJ_P0051385 Lipn protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051420.1 MGP_CASTEiJ_G0024272.1 mouse_genomes_project 19 34751894 34826479 + MGP_CASTEiJ_P0051420 Hectd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051421.1 MGP_CASTEiJ_G0024272.1 mouse_genomes_project 19 34751923 34822325 + MGP_CASTEiJ_P0051421 Hectd2 protein_coding protein_coding MGP_CASTEiJ_T0051422.1 MGP_CASTEiJ_G0024272.1 mouse_genomes_project 19 34751924 34792023 + Hectd2 protein_coding retained_intron MGP_CASTEiJ_T0051423.1 MGP_CASTEiJ_G0024272.1 mouse_genomes_project 19 34751924 34826482 + MGP_CASTEiJ_P0051423 Hectd2 protein_coding protein_coding MGP_CASTEiJ_T0051424.1 MGP_CASTEiJ_G0024272.1 mouse_genomes_project 19 34751933 34798214 + Hectd2 protein_coding retained_intron MGP_CASTEiJ_T0051425.1 MGP_CASTEiJ_G0024272.1 mouse_genomes_project 19 34752084 34770872 + Hectd2 protein_coding retained_intron MGP_CASTEiJ_T0051426.1 MGP_CASTEiJ_G0024272.1 mouse_genomes_project 19 34752115 34820932 + MGP_CASTEiJ_P0051426 Hectd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051427.1 MGP_CASTEiJ_G0024272.1 mouse_genomes_project 19 34786379 34820932 + MGP_CASTEiJ_P0051427 Hectd2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051428.1 MGP_CASTEiJ_G0024272.1 mouse_genomes_project 19 34807260 34814502 + Hectd2 protein_coding retained_intron MGP_CASTEiJ_T0050475.1 MGP_CASTEiJ_G0023945.1 mouse_genomes_project 19 3031142 3032781 + MGP_CASTEiJ_P0050475 protein_coding protein_coding MGP_CASTEiJ_T0050476.1 MGP_CASTEiJ_G0023945.1 mouse_genomes_project 19 3031142 3032781 + MGP_CASTEiJ_P0050476 protein_coding protein_coding MGP_CASTEiJ_T0050478.1 MGP_CASTEiJ_G0023945.1 mouse_genomes_project 19 3031221 3032781 + MGP_CASTEiJ_P0050478 protein_coding protein_coding MGP_CASTEiJ_T0050093.1 MGP_CASTEiJ_G0023830.1 mouse_genomes_project 19 143285 152489 + MGP_CASTEiJ_P0050093 Mtl5 protein_coding protein_coding MGP_CASTEiJ_T0050094.1 MGP_CASTEiJ_G0023830.1 mouse_genomes_project 19 143350 161415 + MGP_CASTEiJ_P0050094 Mtl5 protein_coding protein_coding MGP_CASTEiJ_T0012983.1 MGP_CASTEiJ_G0011146.1 mouse_genomes_project 19 21117096 21118089 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052093.1 MGP_CASTEiJ_G0024475.1 mouse_genomes_project 19 58398580 58413196 + MGP_CASTEiJ_P0052093 Pnliprp1 protein_coding protein_coding MGP_CASTEiJ_T0051191.1 MGP_CASTEiJ_G0024191.1 mouse_genomes_project 19 21184468 21186200 + MGP_CASTEiJ_P0051191 Gm9938 protein_coding protein_coding MGP_CASTEiJ_T0051061.1 MGP_CASTEiJ_G0024120.1 mouse_genomes_project 19 9460360 9485076 + MGP_CASTEiJ_P0051061 Keg1 protein_coding protein_coding MGP_CASTEiJ_T0051062.1 MGP_CASTEiJ_G0024120.1 mouse_genomes_project 19 9460361 9481243 + Keg1 protein_coding processed_transcript MGP_CASTEiJ_T0051063.1 MGP_CASTEiJ_G0024120.1 mouse_genomes_project 19 9460367 9483759 + Keg1 protein_coding retained_intron MGP_CASTEiJ_T0051064.1 MGP_CASTEiJ_G0024120.1 mouse_genomes_project 19 9460367 9484180 + MGP_CASTEiJ_P0051064 Keg1 protein_coding protein_coding MGP_CASTEiJ_T0051065.1 MGP_CASTEiJ_G0024120.1 mouse_genomes_project 19 9460378 9480033 + Keg1 protein_coding retained_intron MGP_CASTEiJ_T0051066.1 MGP_CASTEiJ_G0024120.1 mouse_genomes_project 19 9460388 9479955 + Keg1 protein_coding retained_intron MGP_CASTEiJ_T0051067.1 MGP_CASTEiJ_G0024120.1 mouse_genomes_project 19 9460388 9484290 + MGP_CASTEiJ_P0051067 Keg1 protein_coding protein_coding MGP_CASTEiJ_T0102197.1 MGP_CASTEiJ_G0038922.1 mouse_genomes_project 19 31545718 31558643 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100834.1 MGP_CASTEiJ_G0037747.1 mouse_genomes_project 19 19577251 19577349 - Gm22506 snoRNA snoRNA MGP_CASTEiJ_T0099593.1 MGP_CASTEiJ_G0036506.1 mouse_genomes_project 19 1802478 1802588 + Gm25334 snRNA snRNA MGP_CASTEiJ_T0051030.1 MGP_CASTEiJ_G0024097.1 mouse_genomes_project 19 8442875 8458057 + MGP_CASTEiJ_P0051030 Gif protein_coding protein_coding MGP_CASTEiJ_T0050554.1 MGP_CASTEiJ_G0023964.1 mouse_genomes_project 19 3307177 3327272 + MGP_CASTEiJ_P0050554 Cdc42bpg protein_coding protein_coding MGP_CASTEiJ_T0050555.1 MGP_CASTEiJ_G0023964.1 mouse_genomes_project 19 3323355 3323778 + Cdc42bpg protein_coding retained_intron MGP_CASTEiJ_T0051035.1 MGP_CASTEiJ_G0024100.1 mouse_genomes_project 19 8584146 8585306 - MGP_CASTEiJ_P0051035 Olfr1419 protein_coding protein_coding MGP_CASTEiJ_T0099611.1 MGP_CASTEiJ_G0036524.1 mouse_genomes_project 19 46642656 46642760 - Gm24805 snRNA snRNA MGP_CASTEiJ_T0050351.1 MGP_CASTEiJ_G0023904.1 mouse_genomes_project 19 2265287 2273704 + MGP_CASTEiJ_P0050351 Catsper1 protein_coding protein_coding MGP_CASTEiJ_T0100818.1 MGP_CASTEiJ_G0037731.1 mouse_genomes_project 19 902514 902730 - Gm23927 snoRNA snoRNA MGP_CASTEiJ_T0010038.1 MGP_CASTEiJ_G0008226.1 mouse_genomes_project 19 46168077 46168148 - Mir6995 miRNA miRNA MGP_CASTEiJ_T0051093.1 MGP_CASTEiJ_G0024144.1 mouse_genomes_project 19 10492451 10493393 + MGP_CASTEiJ_P0051093 Olfr1489 protein_coding protein_coding MGP_CASTEiJ_T0051438.1 MGP_CASTEiJ_G0024275.1 mouse_genomes_project 19 35161813 35164607 - MGP_CASTEiJ_P0051438 Fgfbp3 protein_coding protein_coding MGP_CASTEiJ_T0050684.1 MGP_CASTEiJ_G0023984.1 mouse_genomes_project 19 3899180 3905689 - MGP_CASTEiJ_P0050684 Vegfb protein_coding protein_coding MGP_CASTEiJ_T0050685.1 MGP_CASTEiJ_G0023984.1 mouse_genomes_project 19 3899180 3905667 - MGP_CASTEiJ_P0050685 Vegfb protein_coding protein_coding MGP_CASTEiJ_T0050686.1 MGP_CASTEiJ_G0023984.1 mouse_genomes_project 19 3904431 3905178 - Vegfb protein_coding retained_intron MGP_CASTEiJ_T0052092.1 MGP_CASTEiJ_G0024474.1 mouse_genomes_project 19 58336492 58350201 + MGP_CASTEiJ_P0052092 Pnlip protein_coding protein_coding MGP_CASTEiJ_T0003756.1 MGP_CASTEiJ_G0003370.1 mouse_genomes_project 19 58967517 58969423 - Gm29261 antisense antisense MGP_CASTEiJ_T0006901.1 MGP_CASTEiJ_G0005681.1 mouse_genomes_project 19 30403120 30405088 + 2700046G09Rik lincRNA lincRNA MGP_CASTEiJ_T0051455.1 MGP_CASTEiJ_G0024279.1 mouse_genomes_project 19 35550542 35646254 - MGP_CASTEiJ_P0051455 Ide protein_coding protein_coding MGP_CASTEiJ_T0051456.1 MGP_CASTEiJ_G0024279.1 mouse_genomes_project 19 35552237 35587954 - Ide protein_coding processed_transcript MGP_CASTEiJ_T0051457.1 MGP_CASTEiJ_G0024279.1 mouse_genomes_project 19 35562483 35572775 - Ide protein_coding retained_intron MGP_CASTEiJ_T0051458.1 MGP_CASTEiJ_G0024279.1 mouse_genomes_project 19 35583913 35594164 - Ide protein_coding processed_transcript MGP_CASTEiJ_T0051459.1 MGP_CASTEiJ_G0024279.1 mouse_genomes_project 19 35584217 35620360 - Ide protein_coding retained_intron MGP_CASTEiJ_T0050873.1 MGP_CASTEiJ_G0024037.1 mouse_genomes_project 19 5924354 5953877 - MGP_CASTEiJ_P0050873 Asrgl1 protein_coding protein_coding MGP_CASTEiJ_T0050874.1 MGP_CASTEiJ_G0024037.1 mouse_genomes_project 19 5948454 5953772 - Asrgl1 protein_coding processed_transcript MGP_CASTEiJ_T0051885.1 MGP_CASTEiJ_G0024420.1 mouse_genomes_project 19 45990996 46024858 - MGP_CASTEiJ_P0051885 Calhm2 protein_coding protein_coding MGP_CASTEiJ_T0051886.1 MGP_CASTEiJ_G0024420.1 mouse_genomes_project 19 46017630 46024858 - MGP_CASTEiJ_P0051886 Calhm2 protein_coding protein_coding MGP_CASTEiJ_T0050282.1 MGP_CASTEiJ_G0023875.1 mouse_genomes_project 19 1495025 1575025 - MGP_CASTEiJ_P0050282 Gm960 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050283.1 MGP_CASTEiJ_G0023875.1 mouse_genomes_project 19 1495045 1575487 - MGP_CASTEiJ_P0050283 Gm960 protein_coding protein_coding MGP_CASTEiJ_T0050284.1 MGP_CASTEiJ_G0023875.1 mouse_genomes_project 19 1518829 1575134 - MGP_CASTEiJ_P0050284 Gm960 protein_coding protein_coding MGP_CASTEiJ_T0100819.1 MGP_CASTEiJ_G0037732.1 mouse_genomes_project 19 902515 902730 - Gm23927 snoRNA snoRNA MGP_CASTEiJ_T0003749.1 MGP_CASTEiJ_G0003363.1 mouse_genomes_project 19 43825878 43831013 - Tlx1os antisense antisense MGP_CASTEiJ_T0051524.1 MGP_CASTEiJ_G0024306.1 mouse_genomes_project 19 38536034 38598113 - MGP_CASTEiJ_P0051524 Pdlim1 protein_coding protein_coding MGP_CASTEiJ_T0051525.1 MGP_CASTEiJ_G0024306.1 mouse_genomes_project 19 38537382 38547116 - Pdlim1 protein_coding retained_intron MGP_CASTEiJ_T0051526.1 MGP_CASTEiJ_G0024306.1 mouse_genomes_project 19 38546902 38598339 - MGP_CASTEiJ_P0051526 Pdlim1 protein_coding protein_coding MGP_CASTEiJ_T0051527.1 MGP_CASTEiJ_G0024306.1 mouse_genomes_project 19 38567093 38598113 - Pdlim1 protein_coding retained_intron MGP_CASTEiJ_T0051177.1 MGP_CASTEiJ_G0024183.1 mouse_genomes_project 19 19124206 19204602 + MGP_CASTEiJ_P0051177 Tmem2 protein_coding protein_coding MGP_CASTEiJ_T0051178.1 MGP_CASTEiJ_G0024183.1 mouse_genomes_project 19 19124206 19204601 + MGP_CASTEiJ_P0051178 Tmem2 protein_coding protein_coding MGP_CASTEiJ_T0051220.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24228144 24418036 + MGP_CASTEiJ_P0051220 Smarca2 protein_coding protein_coding MGP_CASTEiJ_T0051221.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24228148 24417990 + MGP_CASTEiJ_P0051221 Smarca2 protein_coding protein_coding MGP_CASTEiJ_T0051222.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24230290 24417988 + MGP_CASTEiJ_P0051222 Smarca2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051223.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24230366 24418041 + MGP_CASTEiJ_P0051223 Smarca2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051224.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24243797 24417078 + MGP_CASTEiJ_P0051224 Smarca2 protein_coding protein_coding MGP_CASTEiJ_T0051225.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24247677 24255291 + MGP_CASTEiJ_P0051225 Smarca2 protein_coding protein_coding MGP_CASTEiJ_T0051226.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24298256 24307039 + Smarca2 protein_coding retained_intron MGP_CASTEiJ_T0051227.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24309559 24388173 + Smarca2 protein_coding processed_transcript MGP_CASTEiJ_T0051228.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24351482 24411461 + Smarca2 protein_coding retained_intron MGP_CASTEiJ_T0051229.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24357324 24388213 + Smarca2 protein_coding processed_transcript MGP_CASTEiJ_T0051230.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24383435 24417184 + MGP_CASTEiJ_P0051230 Smarca2 protein_coding protein_coding MGP_CASTEiJ_T0051231.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24383589 24417078 + MGP_CASTEiJ_P0051231 Smarca2 protein_coding protein_coding MGP_CASTEiJ_T0051232.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24383624 24415950 + MGP_CASTEiJ_P0051232 Smarca2 protein_coding protein_coding MGP_CASTEiJ_T0051233.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24383625 24417078 + MGP_CASTEiJ_P0051233 Smarca2 protein_coding protein_coding MGP_CASTEiJ_T0051234.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24383625 24417988 + MGP_CASTEiJ_P0051234 Smarca2 protein_coding protein_coding MGP_CASTEiJ_T0051235.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24385970 24414008 + MGP_CASTEiJ_P0051235 Smarca2 protein_coding protein_coding MGP_CASTEiJ_T0051236.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24387175 24410703 + MGP_CASTEiJ_P0051236 Smarca2 protein_coding protein_coding MGP_CASTEiJ_T0051237.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24388185 24418036 + MGP_CASTEiJ_P0051237 Smarca2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051238.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24389836 24417365 + MGP_CASTEiJ_P0051238 Smarca2 protein_coding protein_coding MGP_CASTEiJ_T0051239.1 MGP_CASTEiJ_G0024207.1 mouse_genomes_project 19 24410186 24417140 + MGP_CASTEiJ_P0051239 Smarca2 protein_coding protein_coding MGP_CASTEiJ_T0010017.1 MGP_CASTEiJ_G0008205.1 mouse_genomes_project 19 6455068 6455172 + Gm22369 miRNA miRNA MGP_CASTEiJ_T0051176.1 MGP_CASTEiJ_G0024182.1 mouse_genomes_project 19 18985775 19021697 + MGP_CASTEiJ_P0051176 Abhd17b protein_coding protein_coding MGP_CASTEiJ_T0051887.1 MGP_CASTEiJ_G0024421.1 mouse_genomes_project 19 46027597 46030686 - MGP_CASTEiJ_P0051887 Calhm1 protein_coding protein_coding MGP_CASTEiJ_T0051087.1 MGP_CASTEiJ_G0024138.1 mouse_genomes_project 19 9991471 9992404 + MGP_CASTEiJ_P0051087 Olfr1466 protein_coding protein_coding MGP_CASTEiJ_T0050161.1 MGP_CASTEiJ_G0023845.1 mouse_genomes_project 19 824542 828259 + Doc2g protein_coding retained_intron MGP_CASTEiJ_T0050162.1 MGP_CASTEiJ_G0023845.1 mouse_genomes_project 19 824546 827048 + Doc2g protein_coding retained_intron MGP_CASTEiJ_T0050163.1 MGP_CASTEiJ_G0023845.1 mouse_genomes_project 19 824557 828260 + MGP_CASTEiJ_P0050163 Doc2g protein_coding protein_coding MGP_CASTEiJ_T0050164.1 MGP_CASTEiJ_G0023845.1 mouse_genomes_project 19 824927 827388 + Doc2g protein_coding retained_intron MGP_CASTEiJ_T0051193.1 MGP_CASTEiJ_G0024193.1 mouse_genomes_project 19 21442285 21505170 - MGP_CASTEiJ_P0051193 Fam189a2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051194.1 MGP_CASTEiJ_G0024193.1 mouse_genomes_project 19 21442285 21505204 - MGP_CASTEiJ_P0051194 Fam189a2 protein_coding protein_coding MGP_CASTEiJ_T0051617.1 MGP_CASTEiJ_G0024333.1 mouse_genomes_project 19 40494461 40495841 + MGP_CASTEiJ_P0051617 4933411K16Rik protein_coding protein_coding MGP_CASTEiJ_T0051881.1 MGP_CASTEiJ_G0024416.1 mouse_genomes_project 19 45915456 45933500 - MGP_CASTEiJ_P0051881 Pcgf6 protein_coding protein_coding MGP_CASTEiJ_T0051340.1 MGP_CASTEiJ_G0024235.1 mouse_genomes_project 19 28123479 28129805 + MGP_CASTEiJ_P0051340 Mbl2 protein_coding protein_coding MGP_CASTEiJ_T0051134.1 MGP_CASTEiJ_G0024168.1 mouse_genomes_project 19 15717013 15779126 - MGP_CASTEiJ_P0051134 Ostf1 protein_coding protein_coding MGP_CASTEiJ_T0051135.1 MGP_CASTEiJ_G0024168.1 mouse_genomes_project 19 15718677 15779077 - Ostf1 protein_coding retained_intron MGP_CASTEiJ_T0051136.1 MGP_CASTEiJ_G0024168.1 mouse_genomes_project 19 15731296 15779055 - Ostf1 protein_coding retained_intron MGP_CASTEiJ_T0050971.1 MGP_CASTEiJ_G0024077.1 mouse_genomes_project 19 7798476 7824318 - MGP_CASTEiJ_P0050971 1700025F22Rik protein_coding protein_coding MGP_CASTEiJ_T0050972.1 MGP_CASTEiJ_G0024077.1 mouse_genomes_project 19 7798476 7824304 - MGP_CASTEiJ_P0050972 1700025F22Rik protein_coding protein_coding MGP_CASTEiJ_T0050973.1 MGP_CASTEiJ_G0024077.1 mouse_genomes_project 19 7798476 7818387 - MGP_CASTEiJ_P0050973 1700025F22Rik protein_coding protein_coding MGP_CASTEiJ_T0050974.1 MGP_CASTEiJ_G0024077.1 mouse_genomes_project 19 7798476 7824304 - MGP_CASTEiJ_P0050974 1700025F22Rik protein_coding protein_coding MGP_CASTEiJ_T0098749.1 MGP_CASTEiJ_G0035680.1 mouse_genomes_project 19 8384731 8384807 + Gm25443 scaRNA scaRNA MGP_CASTEiJ_T0050314.1 MGP_CASTEiJ_G0023886.1 mouse_genomes_project 19 1780475 1804457 - MGP_CASTEiJ_P0050314 Bbs1 protein_coding protein_coding MGP_CASTEiJ_T0050966.1 MGP_CASTEiJ_G0024074.1 mouse_genomes_project 19 7663080 7684146 - MGP_CASTEiJ_P0050966 Ms4a18 protein_coding protein_coding MGP_CASTEiJ_T0050922.1 MGP_CASTEiJ_G0024060.1 mouse_genomes_project 19 7276966 7308362 + MGP_CASTEiJ_P0050922 Vwce protein_coding protein_coding MGP_CASTEiJ_T0012998.1 MGP_CASTEiJ_G0011161.1 mouse_genomes_project 19 58466213 58466592 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0051105.1 MGP_CASTEiJ_G0024156.1 mouse_genomes_project 19 10811951 10812829 + MGP_CASTEiJ_P0051105 Olfr1505 protein_coding protein_coding MGP_CASTEiJ_T0051642.1 MGP_CASTEiJ_G0024343.1 mouse_genomes_project 19 41067453 41086233 - MGP_CASTEiJ_P0051642 Loxl4 protein_coding protein_coding MGP_CASTEiJ_T0051643.1 MGP_CASTEiJ_G0024343.1 mouse_genomes_project 19 41068579 41086233 - MGP_CASTEiJ_P0051643 Loxl4 protein_coding protein_coding MGP_CASTEiJ_T0051644.1 MGP_CASTEiJ_G0024343.1 mouse_genomes_project 19 41068807 41081973 - MGP_CASTEiJ_P0051644 Loxl4 protein_coding protein_coding MGP_CASTEiJ_T0051645.1 MGP_CASTEiJ_G0024343.1 mouse_genomes_project 19 41075020 41076777 - Loxl4 protein_coding processed_transcript MGP_CASTEiJ_T0051646.1 MGP_CASTEiJ_G0024343.1 mouse_genomes_project 19 41081050 41086192 - MGP_CASTEiJ_P0051646 Loxl4 protein_coding protein_coding MGP_CASTEiJ_T0051498.1 MGP_CASTEiJ_G0024294.1 mouse_genomes_project 19 37202403 37235554 - MGP_CASTEiJ_P0051498 Noc3l protein_coding protein_coding MGP_CASTEiJ_T0051939.1 MGP_CASTEiJ_G0024436.1 mouse_genomes_project 19 51440202 51441340 + MGP_CASTEiJ_P0051939 Ins1 protein_coding protein_coding MGP_CASTEiJ_T0003723.1 MGP_CASTEiJ_G0003346.1 mouse_genomes_project 19 2670800 2675221 + Gm16538 antisense antisense MGP_CASTEiJ_T0051565.1 MGP_CASTEiJ_G0024315.1 mouse_genomes_project 19 39427290 39443928 - MGP_CASTEiJ_P0051565 Opalin protein_coding protein_coding MGP_CASTEiJ_T0050206.1 MGP_CASTEiJ_G0023855.1 mouse_genomes_project 19 971560 977478 + MGP_CASTEiJ_P0050206 Gpr152 protein_coding protein_coding MGP_CASTEiJ_T0050816.1 MGP_CASTEiJ_G0024017.1 mouse_genomes_project 19 5576781 5579106 + MGP_CASTEiJ_P0050816 Zbtb3 protein_coding protein_coding MGP_CASTEiJ_T0051386.1 MGP_CASTEiJ_G0024255.1 mouse_genomes_project 19 32138333 32160412 + MGP_CASTEiJ_P0051386 Lipm protein_coding protein_coding MGP_CASTEiJ_T0098855.1 MGP_CASTEiJ_G0035780.1 mouse_genomes_project 19 31824304 31836285 - sense_intronic sense_intronic MGP_CASTEiJ_T0050834.1 MGP_CASTEiJ_G0024023.1 mouse_genomes_project 19 5654452 5660299 + MGP_CASTEiJ_P0050834 Ubxn1 protein_coding protein_coding MGP_CASTEiJ_T0050835.1 MGP_CASTEiJ_G0024023.1 mouse_genomes_project 19 5654536 5660307 + MGP_CASTEiJ_P0050835 Ubxn1 protein_coding protein_coding MGP_CASTEiJ_T0050122.1 MGP_CASTEiJ_G0023836.1 mouse_genomes_project 19 648542 693606 + MGP_CASTEiJ_P0050122 Chka protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050123.1 MGP_CASTEiJ_G0023836.1 mouse_genomes_project 19 648566 693610 + MGP_CASTEiJ_P0050123 Chka protein_coding protein_coding MGP_CASTEiJ_T0050124.1 MGP_CASTEiJ_G0023836.1 mouse_genomes_project 19 648579 671048 + Chka protein_coding retained_intron MGP_CASTEiJ_T0050125.1 MGP_CASTEiJ_G0023836.1 mouse_genomes_project 19 648579 693608 + Chka protein_coding retained_intron MGP_CASTEiJ_T0050126.1 MGP_CASTEiJ_G0023836.1 mouse_genomes_project 19 648601 677764 + Chka protein_coding retained_intron MGP_CASTEiJ_T0050127.1 MGP_CASTEiJ_G0023836.1 mouse_genomes_project 19 648601 667029 + Chka protein_coding retained_intron MGP_CASTEiJ_T0050128.1 MGP_CASTEiJ_G0023836.1 mouse_genomes_project 19 648725 683911 + MGP_CASTEiJ_P0050128 Chka protein_coding unknown_likely_coding MGP_CASTEiJ_T0050129.1 MGP_CASTEiJ_G0023836.1 mouse_genomes_project 19 648845 693605 + MGP_CASTEiJ_P0050129 Chka protein_coding protein_coding MGP_CASTEiJ_T0050130.1 MGP_CASTEiJ_G0023836.1 mouse_genomes_project 19 648870 685105 + MGP_CASTEiJ_P0050130 Chka protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050131.1 MGP_CASTEiJ_G0023836.1 mouse_genomes_project 19 649132 686691 + MGP_CASTEiJ_P0050131 Chka protein_coding protein_coding MGP_CASTEiJ_T0050132.1 MGP_CASTEiJ_G0023836.1 mouse_genomes_project 19 673813 689174 + MGP_CASTEiJ_P0050132 Chka protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050133.1 MGP_CASTEiJ_G0023836.1 mouse_genomes_project 19 674514 683826 + Chka protein_coding processed_transcript MGP_CASTEiJ_T0050134.1 MGP_CASTEiJ_G0023836.1 mouse_genomes_project 19 674528 683779 + Chka protein_coding retained_intron MGP_CASTEiJ_T0050135.1 MGP_CASTEiJ_G0023836.1 mouse_genomes_project 19 674554 685657 + Chka protein_coding processed_transcript MGP_CASTEiJ_T0050136.1 MGP_CASTEiJ_G0023836.1 mouse_genomes_project 19 690970 692897 + Chka protein_coding retained_intron MGP_CASTEiJ_T0051822.1 MGP_CASTEiJ_G0024398.1 mouse_genomes_project 19 44931897 45076969 + MGP_CASTEiJ_P0051822 Gbf1 protein_coding protein_coding MGP_CASTEiJ_T0051823.1 MGP_CASTEiJ_G0024398.1 mouse_genomes_project 19 44931918 45042610 + Gbf1 protein_coding retained_intron MGP_CASTEiJ_T0051824.1 MGP_CASTEiJ_G0024398.1 mouse_genomes_project 19 44931936 45054796 + Gbf1 protein_coding retained_intron MGP_CASTEiJ_T0051825.1 MGP_CASTEiJ_G0024398.1 mouse_genomes_project 19 44931961 45031879 + Gbf1 protein_coding processed_transcript MGP_CASTEiJ_T0051826.1 MGP_CASTEiJ_G0024398.1 mouse_genomes_project 19 45031779 45076968 + MGP_CASTEiJ_P0051826 Gbf1 protein_coding protein_coding MGP_CASTEiJ_T0051827.1 MGP_CASTEiJ_G0024398.1 mouse_genomes_project 19 45040679 45046374 + MGP_CASTEiJ_P0051827 Gbf1 protein_coding protein_coding MGP_CASTEiJ_T0051829.1 MGP_CASTEiJ_G0024398.1 mouse_genomes_project 19 45055401 45057308 + Gbf1 protein_coding processed_transcript MGP_CASTEiJ_T0051830.1 MGP_CASTEiJ_G0024398.1 mouse_genomes_project 19 45056315 45059996 + Gbf1 protein_coding retained_intron MGP_CASTEiJ_T0051831.1 MGP_CASTEiJ_G0024398.1 mouse_genomes_project 19 45070334 45071471 + Gbf1 protein_coding retained_intron MGP_CASTEiJ_T0051832.1 MGP_CASTEiJ_G0024398.1 mouse_genomes_project 19 45070641 45074142 + MGP_CASTEiJ_P0051832 Gbf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051833.1 MGP_CASTEiJ_G0024398.1 mouse_genomes_project 19 45070796 45073945 + Gbf1 protein_coding retained_intron MGP_CASTEiJ_T0051834.1 MGP_CASTEiJ_G0024398.1 mouse_genomes_project 19 45073308 45074486 + Gbf1 protein_coding processed_transcript MGP_CASTEiJ_T0051835.1 MGP_CASTEiJ_G0024398.1 mouse_genomes_project 19 45073466 45074400 + Gbf1 protein_coding retained_intron MGP_CASTEiJ_T0051836.1 MGP_CASTEiJ_G0024398.1 mouse_genomes_project 19 45075021 45076439 + Gbf1 protein_coding retained_intron MGP_CASTEiJ_T0051168.1 MGP_CASTEiJ_G0024180.1 mouse_genomes_project 19 18870438 18872412 + MGP_CASTEiJ_P0051168 Gm3443 protein_coding protein_coding MGP_CASTEiJ_T0050659.1 MGP_CASTEiJ_G0023975.1 mouse_genomes_project 19 3821932 3823283 + MGP_CASTEiJ_P0050659 Trmt112 protein_coding protein_coding MGP_CASTEiJ_T0050660.1 MGP_CASTEiJ_G0023975.1 mouse_genomes_project 19 3821980 3823262 + MGP_CASTEiJ_P0050660 Trmt112 protein_coding protein_coding MGP_CASTEiJ_T0050661.1 MGP_CASTEiJ_G0023975.1 mouse_genomes_project 19 3822386 3823068 + Trmt112 protein_coding retained_intron MGP_CASTEiJ_T0050662.1 MGP_CASTEiJ_G0023975.1 mouse_genomes_project 19 3822397 3823262 + MGP_CASTEiJ_P0050662 Trmt112 protein_coding protein_coding MGP_CASTEiJ_T0012973.1 MGP_CASTEiJ_G0011136.1 mouse_genomes_project 19 8594717 8595446 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0051534.1 MGP_CASTEiJ_G0024308.1 mouse_genomes_project 19 38891363 38927472 - MGP_CASTEiJ_P0051534 Aldh18a1 protein_coding protein_coding MGP_CASTEiJ_T0051535.1 MGP_CASTEiJ_G0024308.1 mouse_genomes_project 19 38891363 38927378 - MGP_CASTEiJ_P0051535 Aldh18a1 protein_coding protein_coding MGP_CASTEiJ_T0051536.1 MGP_CASTEiJ_G0024308.1 mouse_genomes_project 19 38892252 38896030 - Aldh18a1 protein_coding retained_intron MGP_CASTEiJ_T0051537.1 MGP_CASTEiJ_G0024308.1 mouse_genomes_project 19 38894522 38895908 - MGP_CASTEiJ_P0051537 Aldh18a1 protein_coding protein_coding MGP_CASTEiJ_T0051538.1 MGP_CASTEiJ_G0024308.1 mouse_genomes_project 19 38898220 38927432 - Aldh18a1 protein_coding retained_intron MGP_CASTEiJ_T0051539.1 MGP_CASTEiJ_G0024308.1 mouse_genomes_project 19 38913287 38927393 - MGP_CASTEiJ_P0051539 Aldh18a1 protein_coding protein_coding MGP_CASTEiJ_T0051540.1 MGP_CASTEiJ_G0024308.1 mouse_genomes_project 19 38916640 38927419 - MGP_CASTEiJ_P0051540 Aldh18a1 protein_coding protein_coding MGP_CASTEiJ_T0051541.1 MGP_CASTEiJ_G0024308.1 mouse_genomes_project 19 38916683 38927391 - MGP_CASTEiJ_P0051541 Aldh18a1 protein_coding protein_coding MGP_CASTEiJ_T0051634.1 MGP_CASTEiJ_G0024340.1 mouse_genomes_project 19 40703907 40728229 + MGP_CASTEiJ_P0051634 Golga7b protein_coding protein_coding MGP_CASTEiJ_T0051635.1 MGP_CASTEiJ_G0024340.1 mouse_genomes_project 19 40713567 40728229 + MGP_CASTEiJ_P0051635 Golga7b protein_coding protein_coding MGP_CASTEiJ_T0052024.1 MGP_CASTEiJ_G0024460.1 mouse_genomes_project 19 55951087 55988735 + MGP_CASTEiJ_P0052024 Plekhs1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0052025.1 MGP_CASTEiJ_G0024460.1 mouse_genomes_project 19 55955320 55989597 + MGP_CASTEiJ_P0052025 Plekhs1 protein_coding protein_coding MGP_CASTEiJ_T0052026.1 MGP_CASTEiJ_G0024460.1 mouse_genomes_project 19 55955320 55989597 + MGP_CASTEiJ_P0052026 Plekhs1 protein_coding protein_coding MGP_CASTEiJ_T0051084.1 MGP_CASTEiJ_G0024135.1 mouse_genomes_project 19 9882965 9884067 - MGP_CASTEiJ_P0051084 Olfr1459 protein_coding protein_coding MGP_CASTEiJ_T0011156.1 MGP_CASTEiJ_G0009344.1 mouse_genomes_project 19 61037877 61037985 - Gm27940 misc_RNA misc_RNA MGP_CASTEiJ_T0050987.1 MGP_CASTEiJ_G0024083.1 mouse_genomes_project 19 7964850 7981602 - MGP_CASTEiJ_P0050987 Ms4a7 protein_coding protein_coding MGP_CASTEiJ_T0050988.1 MGP_CASTEiJ_G0024083.1 mouse_genomes_project 19 7964850 7983045 - MGP_CASTEiJ_P0050988 Ms4a7 protein_coding protein_coding MGP_CASTEiJ_T0050989.1 MGP_CASTEiJ_G0024083.1 mouse_genomes_project 19 7965217 7983017 - MGP_CASTEiJ_P0050989 Ms4a7 protein_coding protein_coding MGP_CASTEiJ_T0050990.1 MGP_CASTEiJ_G0024083.1 mouse_genomes_project 19 7965220 7969460 - MGP_CASTEiJ_P0050990 Ms4a7 protein_coding protein_coding MGP_CASTEiJ_T0050991.1 MGP_CASTEiJ_G0024083.1 mouse_genomes_project 19 7965316 7983047 - Ms4a7 protein_coding retained_intron MGP_CASTEiJ_T0050870.1 MGP_CASTEiJ_G0024035.1 mouse_genomes_project 19 5784710 5810972 + MGP_CASTEiJ_P0050870 Ahnak protein_coding protein_coding MGP_CASTEiJ_T0050871.1 MGP_CASTEiJ_G0024035.1 mouse_genomes_project 19 5784710 5886019 + MGP_CASTEiJ_P0050871 Ahnak protein_coding protein_coding MGP_CASTEiJ_T0010045.1 MGP_CASTEiJ_G0008233.1 mouse_genomes_project 19 57672912 57672982 + Mir5623 miRNA miRNA MGP_CASTEiJ_T0051128.1 MGP_CASTEiJ_G0024166.1 mouse_genomes_project 19 14465202 14472532 + MGP_CASTEiJ_P0051128 Rfk protein_coding protein_coding MGP_CASTEiJ_T0051129.1 MGP_CASTEiJ_G0024166.1 mouse_genomes_project 19 14465727 14471015 + Rfk protein_coding processed_transcript MGP_CASTEiJ_T0051130.1 MGP_CASTEiJ_G0024166.1 mouse_genomes_project 19 14468597 14471124 + Rfk protein_coding processed_transcript MGP_CASTEiJ_T0012979.1 MGP_CASTEiJ_G0011142.1 mouse_genomes_project 19 13262187 13263167 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010013.1 MGP_CASTEiJ_G0008201.1 mouse_genomes_project 19 4373820 4373890 + Mir6991 miRNA miRNA MGP_CASTEiJ_T0050895.1 MGP_CASTEiJ_G0024048.1 mouse_genomes_project 19 6842941 6875194 - MGP_CASTEiJ_P0050895 Myrf protein_coding protein_coding MGP_CASTEiJ_T0050896.1 MGP_CASTEiJ_G0024048.1 mouse_genomes_project 19 6843973 6875194 - Myrf protein_coding retained_intron MGP_CASTEiJ_T0050897.1 MGP_CASTEiJ_G0024048.1 mouse_genomes_project 19 6844369 6875191 - MGP_CASTEiJ_P0050897 Myrf protein_coding protein_coding MGP_CASTEiJ_T0050898.1 MGP_CASTEiJ_G0024048.1 mouse_genomes_project 19 6844965 6851928 - MGP_CASTEiJ_P0050898 Myrf protein_coding protein_coding MGP_CASTEiJ_T0050899.1 MGP_CASTEiJ_G0024048.1 mouse_genomes_project 19 6845050 6875050 - MGP_CASTEiJ_P0050899 Myrf protein_coding protein_coding MGP_CASTEiJ_T0050900.1 MGP_CASTEiJ_G0024048.1 mouse_genomes_project 19 6860378 6875194 - Myrf protein_coding retained_intron MGP_CASTEiJ_T0098367.1 MGP_CASTEiJ_G0035298.1 mouse_genomes_project 19 60749565 60750148 - pseudogene pseudogene MGP_CASTEiJ_T0100830.1 MGP_CASTEiJ_G0037743.1 mouse_genomes_project 19 8652375 8652509 - Gm22272 snoRNA snoRNA MGP_CASTEiJ_T0050568.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3346175 3360766 + Map4k2 protein_coding retained_intron MGP_CASTEiJ_T0050569.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3346195 3347702 + MGP_CASTEiJ_P0050569 Map4k2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050570.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3346200 3360769 + MGP_CASTEiJ_P0050570 Map4k2 protein_coding protein_coding MGP_CASTEiJ_T0050571.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3346231 3347043 + Map4k2 protein_coding processed_transcript MGP_CASTEiJ_T0050572.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3346248 3360460 + MGP_CASTEiJ_P0050572 Map4k2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050573.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3346256 3347920 + Map4k2 protein_coding retained_intron MGP_CASTEiJ_T0050574.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3346264 3350833 + MGP_CASTEiJ_P0050574 Map4k2 protein_coding protein_coding MGP_CASTEiJ_T0050575.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3346290 3358685 + MGP_CASTEiJ_P0050575 Map4k2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050576.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3346310 3348569 + Map4k2 protein_coding retained_intron MGP_CASTEiJ_T0050577.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3346458 3348950 + Map4k2 protein_coding processed_transcript MGP_CASTEiJ_T0050578.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3346489 3348567 + Map4k2 protein_coding processed_transcript MGP_CASTEiJ_T0050579.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3346518 3348567 + Map4k2 protein_coding retained_intron MGP_CASTEiJ_T0050580.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3346825 3357046 + Map4k2 protein_coding retained_intron MGP_CASTEiJ_T0050581.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3347583 3347891 + Map4k2 protein_coding retained_intron MGP_CASTEiJ_T0050582.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3348561 3349738 + Map4k2 protein_coding retained_intron MGP_CASTEiJ_T0050583.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3350440 3351384 + Map4k2 protein_coding retained_intron MGP_CASTEiJ_T0050584.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3351639 3358998 + Map4k2 protein_coding retained_intron MGP_CASTEiJ_T0050585.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3351759 3356823 + Map4k2 protein_coding processed_transcript MGP_CASTEiJ_T0050586.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3351782 3358996 + MGP_CASTEiJ_P0050586 Map4k2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050587.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3356072 3356744 + Map4k2 protein_coding retained_intron MGP_CASTEiJ_T0050588.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3357777 3360597 + Map4k2 protein_coding processed_transcript MGP_CASTEiJ_T0050589.1 MGP_CASTEiJ_G0023966.1 mouse_genomes_project 19 3357932 3358791 + Map4k2 protein_coding processed_transcript MGP_CASTEiJ_T0050852.1 MGP_CASTEiJ_G0024029.1 mouse_genomes_project 19 5708482 5715908 + MGP_CASTEiJ_P0050852 B3gat3 protein_coding protein_coding MGP_CASTEiJ_T0012997.1 MGP_CASTEiJ_G0011160.1 mouse_genomes_project 19 56285503 56285851 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0050412.1 MGP_CASTEiJ_G0023924.1 mouse_genomes_project 19 2543767 2551018 - MGP_CASTEiJ_P0050412 Kat5 protein_coding protein_coding MGP_CASTEiJ_T0051086.1 MGP_CASTEiJ_G0024137.1 mouse_genomes_project 19 9939787 9940711 + MGP_CASTEiJ_P0051086 Olfr1462 protein_coding protein_coding MGP_CASTEiJ_T0050414.1 MGP_CASTEiJ_G0023926.1 mouse_genomes_project 19 2592517 2605076 - MGP_CASTEiJ_P0050414 Sipa1 protein_coding protein_coding MGP_CASTEiJ_T0050415.1 MGP_CASTEiJ_G0023926.1 mouse_genomes_project 19 2592517 2605076 - MGP_CASTEiJ_P0050415 Sipa1 protein_coding protein_coding MGP_CASTEiJ_T0050416.1 MGP_CASTEiJ_G0023926.1 mouse_genomes_project 19 2592517 2605076 - MGP_CASTEiJ_P0050416 Sipa1 protein_coding protein_coding MGP_CASTEiJ_T0050417.1 MGP_CASTEiJ_G0023926.1 mouse_genomes_project 19 2592517 2605076 - MGP_CASTEiJ_P0050417 Sipa1 protein_coding protein_coding MGP_CASTEiJ_T0050822.1 MGP_CASTEiJ_G0024020.1 mouse_genomes_project 19 5612455 5614760 - MGP_CASTEiJ_P0050822 Gng3 protein_coding protein_coding MGP_CASTEiJ_T0051075.1 MGP_CASTEiJ_G0024126.1 mouse_genomes_project 19 9659862 9660968 - MGP_CASTEiJ_P0051075 protein_coding protein_coding MGP_CASTEiJ_T0051318.1 MGP_CASTEiJ_G0024229.1 mouse_genomes_project 19 27544135 27642806 - MGP_CASTEiJ_P0051318 9930021J03Rik protein_coding protein_coding MGP_CASTEiJ_T0051319.1 MGP_CASTEiJ_G0024229.1 mouse_genomes_project 19 27545029 27587816 - MGP_CASTEiJ_P0051319 9930021J03Rik protein_coding protein_coding MGP_CASTEiJ_T0051320.1 MGP_CASTEiJ_G0024229.1 mouse_genomes_project 19 27545289 27642948 - MGP_CASTEiJ_P0051320 9930021J03Rik protein_coding protein_coding MGP_CASTEiJ_T0051321.1 MGP_CASTEiJ_G0024229.1 mouse_genomes_project 19 27550432 27587878 - MGP_CASTEiJ_P0051321 9930021J03Rik protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050992.1 MGP_CASTEiJ_G0024084.1 mouse_genomes_project 19 8025796 8051515 + MGP_CASTEiJ_P0050992 Ms4a4a protein_coding protein_coding MGP_CASTEiJ_T0050462.1 MGP_CASTEiJ_G0023940.1 mouse_genomes_project 19 2898649 2922340 - MGP_CASTEiJ_P0050462 Pola2 protein_coding protein_coding MGP_CASTEiJ_T0050463.1 MGP_CASTEiJ_G0023940.1 mouse_genomes_project 19 2899179 2922340 - MGP_CASTEiJ_P0050463 Pola2 protein_coding protein_coding MGP_CASTEiJ_T0051102.1 MGP_CASTEiJ_G0024153.1 mouse_genomes_project 19 10716244 10717192 - MGP_CASTEiJ_P0051102 Olfr1501 protein_coding protein_coding MGP_CASTEiJ_T0010029.1 MGP_CASTEiJ_G0008217.1 mouse_genomes_project 19 33059425 33059499 + Mir1950 miRNA miRNA MGP_CASTEiJ_T0012988.1 MGP_CASTEiJ_G0011151.1 mouse_genomes_project 19 26596651 26597448 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0050590.1 MGP_CASTEiJ_G0023967.1 mouse_genomes_project 19 3371524 3387389 + MGP_CASTEiJ_P0050590 Sf1 protein_coding protein_coding MGP_CASTEiJ_T0050591.1 MGP_CASTEiJ_G0023967.1 mouse_genomes_project 19 3371553 3386558 + MGP_CASTEiJ_P0050591 Sf1 protein_coding protein_coding MGP_CASTEiJ_T0050592.1 MGP_CASTEiJ_G0023967.1 mouse_genomes_project 19 3371644 3385868 + MGP_CASTEiJ_P0050592 Sf1 protein_coding protein_coding MGP_CASTEiJ_T0050593.1 MGP_CASTEiJ_G0023967.1 mouse_genomes_project 19 3371756 3373793 + Sf1 protein_coding retained_intron MGP_CASTEiJ_T0050594.1 MGP_CASTEiJ_G0023967.1 mouse_genomes_project 19 3371756 3386551 + MGP_CASTEiJ_P0050594 Sf1 protein_coding protein_coding MGP_CASTEiJ_T0050595.1 MGP_CASTEiJ_G0023967.1 mouse_genomes_project 19 3371756 3386557 + MGP_CASTEiJ_P0050595 Sf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050596.1 MGP_CASTEiJ_G0023967.1 mouse_genomes_project 19 3371797 3376616 + Sf1 protein_coding retained_intron MGP_CASTEiJ_T0050597.1 MGP_CASTEiJ_G0023967.1 mouse_genomes_project 19 3372028 3380023 + MGP_CASTEiJ_P0050597 Sf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050598.1 MGP_CASTEiJ_G0023967.1 mouse_genomes_project 19 3372391 3380448 + MGP_CASTEiJ_P0050598 Sf1 protein_coding protein_coding MGP_CASTEiJ_T0050599.1 MGP_CASTEiJ_G0023967.1 mouse_genomes_project 19 3377949 3379922 + Sf1 protein_coding processed_transcript MGP_CASTEiJ_T0050600.1 MGP_CASTEiJ_G0023967.1 mouse_genomes_project 19 3378542 3379525 + Sf1 protein_coding retained_intron MGP_CASTEiJ_T0050601.1 MGP_CASTEiJ_G0023967.1 mouse_genomes_project 19 3380242 3380748 + Sf1 protein_coding retained_intron MGP_CASTEiJ_T0050602.1 MGP_CASTEiJ_G0023967.1 mouse_genomes_project 19 3381451 3386010 + MGP_CASTEiJ_P0050602 Sf1 protein_coding protein_coding MGP_CASTEiJ_T0050603.1 MGP_CASTEiJ_G0023967.1 mouse_genomes_project 19 3381801 3385868 + MGP_CASTEiJ_P0050603 Sf1 protein_coding protein_coding MGP_CASTEiJ_T0050604.1 MGP_CASTEiJ_G0023967.1 mouse_genomes_project 19 3381920 3385137 + MGP_CASTEiJ_P0050604 Sf1 protein_coding protein_coding MGP_CASTEiJ_T0011141.1 MGP_CASTEiJ_G0009329.1 mouse_genomes_project 19 2794484 2794636 - Gm27533 misc_RNA misc_RNA MGP_CASTEiJ_T0051097.1 MGP_CASTEiJ_G0024148.1 mouse_genomes_project 19 10646447 10647535 + MGP_CASTEiJ_P0051097 Olfr1495 protein_coding protein_coding MGP_CASTEiJ_T0051046.1 MGP_CASTEiJ_G0024111.1 mouse_genomes_project 19 9190267 9191355 + MGP_CASTEiJ_P0051046 Olfr1441 protein_coding protein_coding MGP_CASTEiJ_T0051120.1 MGP_CASTEiJ_G0024162.1 mouse_genomes_project 19 13616789 13800381 - MGP_CASTEiJ_P0051120 Vps13a protein_coding protein_coding MGP_CASTEiJ_T0051121.1 MGP_CASTEiJ_G0024162.1 mouse_genomes_project 19 13633958 13800327 - MGP_CASTEiJ_P0051121 Vps13a protein_coding unknown_likely_coding MGP_CASTEiJ_T0016963.1 MGP_CASTEiJ_G0014698.1 mouse_genomes_project 19 24245027 24247642 - Gm20616 processed_transcript processed_transcript MGP_CASTEiJ_T0016964.1 MGP_CASTEiJ_G0014698.1 mouse_genomes_project 19 24245238 24247633 - Gm20616 processed_transcript processed_transcript MGP_CASTEiJ_T0051039.1 MGP_CASTEiJ_G0024104.1 mouse_genomes_project 19 8760238 8761171 - MGP_CASTEiJ_P0051039 Olfr1423 protein_coding protein_coding MGP_CASTEiJ_T0051091.1 MGP_CASTEiJ_G0024142.1 mouse_genomes_project 19 10199607 10202710 + MGP_CASTEiJ_P0051091 protein_coding protein_coding MGP_CASTEiJ_T0003741.1 MGP_CASTEiJ_G0003358.1 mouse_genomes_project 19 36677691 36698669 - Gm42723 antisense antisense MGP_CASTEiJ_T0003742.1 MGP_CASTEiJ_G0003358.1 mouse_genomes_project 19 36697603 36698654 - Gm42723 antisense antisense MGP_CASTEiJ_T0051012.1 MGP_CASTEiJ_G0024091.1 mouse_genomes_project 19 8281058 8292477 - MGP_CASTEiJ_P0051012 Ms4a6d protein_coding protein_coding MGP_CASTEiJ_T0051013.1 MGP_CASTEiJ_G0024091.1 mouse_genomes_project 19 8281436 8287393 - Ms4a6d protein_coding processed_transcript MGP_CASTEiJ_T0051014.1 MGP_CASTEiJ_G0024091.1 mouse_genomes_project 19 8282421 8287487 - Ms4a6d protein_coding retained_intron MGP_CASTEiJ_T0052116.1 MGP_CASTEiJ_G0024489.1 mouse_genomes_project 19 60277678 60337764 - MGP_CASTEiJ_P0052116 Cacul1 protein_coding protein_coding MGP_CASTEiJ_T0052117.1 MGP_CASTEiJ_G0024489.1 mouse_genomes_project 19 60277678 60337764 - MGP_CASTEiJ_P0052117 Cacul1 protein_coding protein_coding MGP_CASTEiJ_T0052118.1 MGP_CASTEiJ_G0024489.1 mouse_genomes_project 19 60277678 60337764 - MGP_CASTEiJ_P0052118 Cacul1 protein_coding protein_coding MGP_CASTEiJ_T0051072.1 MGP_CASTEiJ_G0024123.1 mouse_genomes_project 19 9568557 9601788 + MGP_CASTEiJ_P0051072 Lpxn protein_coding protein_coding MGP_CASTEiJ_T0050746.1 MGP_CASTEiJ_G0024002.1 mouse_genomes_project 19 4562197 4572758 - MGP_CASTEiJ_P0050746 Lgals12 protein_coding protein_coding MGP_CASTEiJ_T0050747.1 MGP_CASTEiJ_G0024002.1 mouse_genomes_project 19 4562198 4572743 - MGP_CASTEiJ_P0050747 Lgals12 protein_coding protein_coding MGP_CASTEiJ_T0050748.1 MGP_CASTEiJ_G0024002.1 mouse_genomes_project 19 4562251 4572668 - MGP_CASTEiJ_P0050748 Lgals12 protein_coding protein_coding MGP_CASTEiJ_T0050374.1 MGP_CASTEiJ_G0023914.1 mouse_genomes_project 19 2390189 2394613 + MGP_CASTEiJ_P0050374 Fibp protein_coding protein_coding MGP_CASTEiJ_T0050375.1 MGP_CASTEiJ_G0023914.1 mouse_genomes_project 19 2390276 2394618 + MGP_CASTEiJ_P0050375 Fibp protein_coding unknown_likely_coding MGP_CASTEiJ_T0011143.1 MGP_CASTEiJ_G0009331.1 mouse_genomes_project 19 2795120 2795242 - Gm28006 misc_RNA misc_RNA MGP_CASTEiJ_T0050360.1 MGP_CASTEiJ_G0023910.1 mouse_genomes_project 19 2352475 2354439 - MGP_CASTEiJ_P0050360 Drap1 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050361.1 MGP_CASTEiJ_G0023910.1 mouse_genomes_project 19 2352475 2354389 - MGP_CASTEiJ_P0050361 Drap1 protein_coding protein_coding MGP_CASTEiJ_T0050362.1 MGP_CASTEiJ_G0023910.1 mouse_genomes_project 19 2352482 2353598 - Drap1 protein_coding retained_intron MGP_CASTEiJ_T0050363.1 MGP_CASTEiJ_G0023910.1 mouse_genomes_project 19 2352483 2354434 - MGP_CASTEiJ_P0050363 Drap1 protein_coding protein_coding MGP_CASTEiJ_T0050364.1 MGP_CASTEiJ_G0023910.1 mouse_genomes_project 19 2352486 2353895 - Drap1 protein_coding retained_intron MGP_CASTEiJ_T0050365.1 MGP_CASTEiJ_G0023910.1 mouse_genomes_project 19 2352489 2354218 - MGP_CASTEiJ_P0050365 Drap1 protein_coding protein_coding MGP_CASTEiJ_T0050366.1 MGP_CASTEiJ_G0023910.1 mouse_genomes_project 19 2352501 2354462 - Drap1 protein_coding retained_intron MGP_CASTEiJ_T0050367.1 MGP_CASTEiJ_G0023910.1 mouse_genomes_project 19 2352501 2354592 - MGP_CASTEiJ_P0050367 Drap1 protein_coding protein_coding MGP_CASTEiJ_T0050368.1 MGP_CASTEiJ_G0023910.1 mouse_genomes_project 19 2352535 2353756 - Drap1 protein_coding retained_intron MGP_CASTEiJ_T0050369.1 MGP_CASTEiJ_G0023910.1 mouse_genomes_project 19 2353281 2354454 - Drap1 protein_coding retained_intron MGP_CASTEiJ_T0051987.1 MGP_CASTEiJ_G0024455.1 mouse_genomes_project 19 54741768 55071798 + MGP_CASTEiJ_P0051987 Vti1a protein_coding protein_coding MGP_CASTEiJ_T0051988.1 MGP_CASTEiJ_G0024455.1 mouse_genomes_project 19 54741868 54931439 + MGP_CASTEiJ_P0051988 Vti1a protein_coding unknown_likely_coding MGP_CASTEiJ_T0006916.1 MGP_CASTEiJ_G0005693.1 mouse_genomes_project 19 44017350 44026041 - Gm28578 lincRNA lincRNA MGP_CASTEiJ_T0006917.1 MGP_CASTEiJ_G0005693.1 mouse_genomes_project 19 44017370 44018114 - Gm28578 lincRNA lincRNA MGP_CASTEiJ_T0006918.1 MGP_CASTEiJ_G0005693.1 mouse_genomes_project 19 44023197 44026027 - Gm28578 lincRNA lincRNA MGP_CASTEiJ_T0000980.1 MGP_CASTEiJ_G0000916.1 mouse_genomes_project 19 35735539 35738644 - TEC TEC MGP_CASTEiJ_T0051188.1 MGP_CASTEiJ_G0024188.1 mouse_genomes_project 19 21007434 21102891 - MGP_CASTEiJ_P0051188 1700028P14Rik protein_coding protein_coding MGP_CASTEiJ_T0050904.1 MGP_CASTEiJ_G0024050.1 mouse_genomes_project 19 7024288 7093468 + MGP_CASTEiJ_P0050904 Syt7 protein_coding protein_coding MGP_CASTEiJ_T0050905.1 MGP_CASTEiJ_G0024050.1 mouse_genomes_project 19 7024288 7093468 + MGP_CASTEiJ_P0050905 Syt7 protein_coding protein_coding MGP_CASTEiJ_T0050906.1 MGP_CASTEiJ_G0024050.1 mouse_genomes_project 19 7024288 7093468 + MGP_CASTEiJ_P0050906 Syt7 protein_coding protein_coding MGP_CASTEiJ_T0050907.1 MGP_CASTEiJ_G0024050.1 mouse_genomes_project 19 7024679 7093471 + MGP_CASTEiJ_P0050907 Syt7 protein_coding unknown_likely_coding MGP_CASTEiJ_T0010005.1 MGP_CASTEiJ_G0008193.1 mouse_genomes_project 19 2622193 2622266 - Mir6987 miRNA miRNA MGP_CASTEiJ_T0051953.1 MGP_CASTEiJ_G0024439.1 mouse_genomes_project 19 52388460 52504886 + MGP_CASTEiJ_P0051953 Add3 protein_coding protein_coding MGP_CASTEiJ_T0051954.1 MGP_CASTEiJ_G0024439.1 mouse_genomes_project 19 52390771 52504886 + MGP_CASTEiJ_P0051954 Add3 protein_coding protein_coding MGP_CASTEiJ_T0051955.1 MGP_CASTEiJ_G0024439.1 mouse_genomes_project 19 52392008 52504886 + MGP_CASTEiJ_P0051955 Add3 protein_coding protein_coding MGP_CASTEiJ_T0051353.1 MGP_CASTEiJ_G0024242.1 mouse_genomes_project 19 30130033 30402421 - MGP_CASTEiJ_P0051353 Sgms1 protein_coding protein_coding MGP_CASTEiJ_T0051354.1 MGP_CASTEiJ_G0024242.1 mouse_genomes_project 19 30130036 30362862 - MGP_CASTEiJ_P0051354 Sgms1 protein_coding protein_coding MGP_CASTEiJ_T0051355.1 MGP_CASTEiJ_G0024242.1 mouse_genomes_project 19 30130789 30215490 - MGP_CASTEiJ_P0051355 Sgms1 protein_coding protein_coding MGP_CASTEiJ_T0051356.1 MGP_CASTEiJ_G0024242.1 mouse_genomes_project 19 30131455 30283959 - MGP_CASTEiJ_P0051356 Sgms1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051357.1 MGP_CASTEiJ_G0024242.1 mouse_genomes_project 19 30131457 30169444 - MGP_CASTEiJ_P0051357 Sgms1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051358.1 MGP_CASTEiJ_G0024242.1 mouse_genomes_project 19 30167476 30403618 - Sgms1 protein_coding retained_intron MGP_CASTEiJ_T0051359.1 MGP_CASTEiJ_G0024242.1 mouse_genomes_project 19 30169281 30207333 - MGP_CASTEiJ_P0051359 Sgms1 protein_coding protein_coding MGP_CASTEiJ_T0051360.1 MGP_CASTEiJ_G0024242.1 mouse_genomes_project 19 30169378 30244276 - Sgms1 protein_coding processed_transcript MGP_CASTEiJ_T0051361.1 MGP_CASTEiJ_G0024242.1 mouse_genomes_project 19 30169390 30333243 - Sgms1 protein_coding processed_transcript MGP_CASTEiJ_T0051362.1 MGP_CASTEiJ_G0024242.1 mouse_genomes_project 19 30169519 30283933 - Sgms1 protein_coding processed_transcript MGP_CASTEiJ_T0051363.1 MGP_CASTEiJ_G0024242.1 mouse_genomes_project 19 30223224 30254296 - Sgms1 protein_coding processed_transcript MGP_CASTEiJ_T0051364.1 MGP_CASTEiJ_G0024242.1 mouse_genomes_project 19 30226348 30296599 - Sgms1 protein_coding retained_intron MGP_CASTEiJ_T0051365.1 MGP_CASTEiJ_G0024242.1 mouse_genomes_project 19 30229079 30244290 - Sgms1 protein_coding retained_intron MGP_CASTEiJ_T0051366.1 MGP_CASTEiJ_G0024242.1 mouse_genomes_project 19 30296298 30402372 - Sgms1 protein_coding retained_intron MGP_CASTEiJ_T0050975.1 MGP_CASTEiJ_G0024078.1 mouse_genomes_project 19 7828409 7856656 - MGP_CASTEiJ_P0050975 Ms4a13 protein_coding protein_coding MGP_CASTEiJ_T0050976.1 MGP_CASTEiJ_G0024078.1 mouse_genomes_project 19 7828410 7856670 - MGP_CASTEiJ_P0050976 Ms4a13 protein_coding protein_coding MGP_CASTEiJ_T0003719.1 MGP_CASTEiJ_G0003344.1 mouse_genomes_project 19 1685856 1690133 + Gm21844 antisense antisense MGP_CASTEiJ_T0050981.1 MGP_CASTEiJ_G0024081.1 mouse_genomes_project 19 7920641 7929432 - Ms4a5 protein_coding retained_intron MGP_CASTEiJ_T0050982.1 MGP_CASTEiJ_G0024081.1 mouse_genomes_project 19 7921274 7933813 - MGP_CASTEiJ_P0050982 Ms4a5 protein_coding protein_coding MGP_CASTEiJ_T0050983.1 MGP_CASTEiJ_G0024081.1 mouse_genomes_project 19 7921274 7933873 - MGP_CASTEiJ_P0050983 Ms4a5 protein_coding protein_coding MGP_CASTEiJ_T0050984.1 MGP_CASTEiJ_G0024081.1 mouse_genomes_project 19 7921589 7929647 - Ms4a5 protein_coding processed_transcript MGP_CASTEiJ_T0050985.1 MGP_CASTEiJ_G0024081.1 mouse_genomes_project 19 7924665 7933860 - MGP_CASTEiJ_P0050985 Ms4a5 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051906.1 MGP_CASTEiJ_G0024427.1 mouse_genomes_project 19 46507872 46568885 + MGP_CASTEiJ_P0051906 Slk protein_coding protein_coding MGP_CASTEiJ_T0051907.1 MGP_CASTEiJ_G0024427.1 mouse_genomes_project 19 46508213 46566089 + MGP_CASTEiJ_P0051907 Slk protein_coding protein_coding MGP_CASTEiJ_T0051908.1 MGP_CASTEiJ_G0024427.1 mouse_genomes_project 19 46540969 46547363 + Slk protein_coding retained_intron MGP_CASTEiJ_T0051909.1 MGP_CASTEiJ_G0024427.1 mouse_genomes_project 19 46542953 46547863 + Slk protein_coding retained_intron MGP_CASTEiJ_T0051910.1 MGP_CASTEiJ_G0024427.1 mouse_genomes_project 19 46558725 46560087 + Slk protein_coding retained_intron MGP_CASTEiJ_T0051618.1 MGP_CASTEiJ_G0024334.1 mouse_genomes_project 19 40519165 40531889 - MGP_CASTEiJ_P0051618 Morn4 protein_coding protein_coding MGP_CASTEiJ_T0050443.1 MGP_CASTEiJ_G0023934.1 mouse_genomes_project 19 2702656 2716092 - MGP_CASTEiJ_P0050443 Scyl1 protein_coding protein_coding MGP_CASTEiJ_T0010040.1 MGP_CASTEiJ_G0008228.1 mouse_genomes_project 19 46844613 46844695 - Gm22240 miRNA miRNA MGP_CASTEiJ_T0051784.1 MGP_CASTEiJ_G0024390.1 mouse_genomes_project 19 44521920 44524716 - MGP_CASTEiJ_P0051784 Kcnip2 protein_coding protein_coding MGP_CASTEiJ_T0051785.1 MGP_CASTEiJ_G0024390.1 mouse_genomes_project 19 44522760 44551792 - Kcnip2 protein_coding retained_intron MGP_CASTEiJ_T0051786.1 MGP_CASTEiJ_G0024390.1 mouse_genomes_project 19 44522760 44551831 - MGP_CASTEiJ_P0051786 Kcnip2 protein_coding protein_coding MGP_CASTEiJ_T0051787.1 MGP_CASTEiJ_G0024390.1 mouse_genomes_project 19 44522760 44551792 - MGP_CASTEiJ_P0051787 Kcnip2 protein_coding protein_coding MGP_CASTEiJ_T0051788.1 MGP_CASTEiJ_G0024390.1 mouse_genomes_project 19 44523763 44548037 - MGP_CASTEiJ_P0051788 Kcnip2 protein_coding protein_coding MGP_CASTEiJ_T0051789.1 MGP_CASTEiJ_G0024390.1 mouse_genomes_project 19 44523862 44551795 - MGP_CASTEiJ_P0051789 Kcnip2 protein_coding protein_coding MGP_CASTEiJ_T0051790.1 MGP_CASTEiJ_G0024390.1 mouse_genomes_project 19 44524084 44526956 - MGP_CASTEiJ_P0051790 Kcnip2 protein_coding protein_coding MGP_CASTEiJ_T0051791.1 MGP_CASTEiJ_G0024390.1 mouse_genomes_project 19 44524084 44551603 - MGP_CASTEiJ_P0051791 Kcnip2 protein_coding protein_coding MGP_CASTEiJ_T0051792.1 MGP_CASTEiJ_G0024390.1 mouse_genomes_project 19 44524407 44551573 - MGP_CASTEiJ_P0051792 Kcnip2 protein_coding protein_coding MGP_CASTEiJ_T0051793.1 MGP_CASTEiJ_G0024390.1 mouse_genomes_project 19 44525388 44530247 - MGP_CASTEiJ_P0051793 Kcnip2 protein_coding protein_coding MGP_CASTEiJ_T0050909.1 MGP_CASTEiJ_G0024052.1 mouse_genomes_project 19 7114032 7122690 - MGP_CASTEiJ_P0050909 Ppp1r32 protein_coding protein_coding MGP_CASTEiJ_T0051491.1 MGP_CASTEiJ_G0024293.1 mouse_genomes_project 19 36874638 36918108 + Plce1 protein_coding processed_transcript MGP_CASTEiJ_T0051492.1 MGP_CASTEiJ_G0024293.1 mouse_genomes_project 19 36874650 37197639 + MGP_CASTEiJ_P0051492 Plce1 protein_coding protein_coding MGP_CASTEiJ_T0051493.1 MGP_CASTEiJ_G0024293.1 mouse_genomes_project 19 36918238 37199269 + MGP_CASTEiJ_P0051493 Plce1 protein_coding protein_coding MGP_CASTEiJ_T0051494.1 MGP_CASTEiJ_G0024293.1 mouse_genomes_project 19 36918250 37197009 + MGP_CASTEiJ_P0051494 Plce1 protein_coding protein_coding MGP_CASTEiJ_T0051495.1 MGP_CASTEiJ_G0024293.1 mouse_genomes_project 19 36980210 37052756 + MGP_CASTEiJ_P0051495 Plce1 protein_coding protein_coding MGP_CASTEiJ_T0051496.1 MGP_CASTEiJ_G0024293.1 mouse_genomes_project 19 37131732 37197797 + Plce1 protein_coding retained_intron MGP_CASTEiJ_T0051497.1 MGP_CASTEiJ_G0024293.1 mouse_genomes_project 19 37145695 37162882 + Plce1 protein_coding retained_intron MGP_CASTEiJ_T0051839.1 MGP_CASTEiJ_G0024400.1 mouse_genomes_project 19 45110712 45119278 - MGP_CASTEiJ_P0051839 Psd protein_coding unknown_likely_coding MGP_CASTEiJ_T0051840.1 MGP_CASTEiJ_G0024400.1 mouse_genomes_project 19 45110719 45128575 - MGP_CASTEiJ_P0051840 Psd protein_coding protein_coding MGP_CASTEiJ_T0051841.1 MGP_CASTEiJ_G0024400.1 mouse_genomes_project 19 45110719 45128575 - MGP_CASTEiJ_P0051841 Psd protein_coding protein_coding MGP_CASTEiJ_T0050694.1 MGP_CASTEiJ_G0023989.1 mouse_genomes_project 19 3942481 3962260 - MGP_CASTEiJ_P0050694 Stip1 protein_coding protein_coding MGP_CASTEiJ_T0010015.1 MGP_CASTEiJ_G0008203.1 mouse_genomes_project 19 5674714 5674790 - Mir5136 miRNA miRNA MGP_CASTEiJ_T0052097.1 MGP_CASTEiJ_G0024478.1 mouse_genomes_project 19 58471666 58544987 - MGP_CASTEiJ_P0052097 Hspa12a protein_coding protein_coding MGP_CASTEiJ_T0051783.1 MGP_CASTEiJ_G0024389.1 mouse_genomes_project 19 44474588 44507865 - MGP_CASTEiJ_P0051783 Mgea5 protein_coding protein_coding MGP_CASTEiJ_T0050452.1 MGP_CASTEiJ_G0023937.1 mouse_genomes_project 19 2842376 2845347 - MGP_CASTEiJ_P0050452 Tigd3 protein_coding protein_coding MGP_CASTEiJ_T0099612.1 MGP_CASTEiJ_G0036525.1 mouse_genomes_project 19 50356155 50356262 - Gm25644 snRNA snRNA MGP_CASTEiJ_T0050442.1 MGP_CASTEiJ_G0023933.1 mouse_genomes_project 19 2685159 2702762 + MGP_CASTEiJ_P0050442 Ltbp3 protein_coding protein_coding MGP_CASTEiJ_T0100845.1 MGP_CASTEiJ_G0037758.1 mouse_genomes_project 19 55762367 55762497 - Gm22271 snoRNA snoRNA MGP_CASTEiJ_T0050821.1 MGP_CASTEiJ_G0024019.1 mouse_genomes_project 19 5593674 5609680 + MGP_CASTEiJ_P0050821 Hnrnpul2 protein_coding protein_coding MGP_CASTEiJ_T0012991.1 MGP_CASTEiJ_G0011154.1 mouse_genomes_project 19 38956669 38957425 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0010039.1 MGP_CASTEiJ_G0008227.1 mouse_genomes_project 19 46684907 46685023 - Mir8090 miRNA miRNA MGP_CASTEiJ_T0051007.1 MGP_CASTEiJ_G0024089.1 mouse_genomes_project 19 8228388 8243054 - MGP_CASTEiJ_P0051007 Ms4a6b protein_coding protein_coding MGP_CASTEiJ_T0051008.1 MGP_CASTEiJ_G0024089.1 mouse_genomes_project 19 8229242 8241004 - MGP_CASTEiJ_P0051008 Ms4a6b protein_coding protein_coding MGP_CASTEiJ_T0051009.1 MGP_CASTEiJ_G0024089.1 mouse_genomes_project 19 8237790 8240969 - Ms4a6b protein_coding retained_intron MGP_CASTEiJ_T0011147.1 MGP_CASTEiJ_G0009335.1 mouse_genomes_project 19 15942615 15942831 - Gm24190 misc_RNA misc_RNA MGP_CASTEiJ_T0012972.1 MGP_CASTEiJ_G0011135.1 mouse_genomes_project 19 8395186 8395978 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0051560.1 MGP_CASTEiJ_G0024312.1 mouse_genomes_project 19 39252475 39275646 + MGP_CASTEiJ_P0051560 Zfp518a protein_coding protein_coding MGP_CASTEiJ_T0050236.1 MGP_CASTEiJ_G0023865.1 mouse_genomes_project 19 1103091 1110581 - MGP_CASTEiJ_P0050236 Ssh3 protein_coding protein_coding MGP_CASTEiJ_T0050237.1 MGP_CASTEiJ_G0023865.1 mouse_genomes_project 19 1103096 1110581 - MGP_CASTEiJ_P0050237 Ssh3 protein_coding protein_coding MGP_CASTEiJ_T0050238.1 MGP_CASTEiJ_G0023865.1 mouse_genomes_project 19 1106476 1110489 - MGP_CASTEiJ_P0050238 Ssh3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0012992.1 MGP_CASTEiJ_G0011155.1 mouse_genomes_project 19 44472487 44473866 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0050833.1 MGP_CASTEiJ_G0024022.1 mouse_genomes_project 19 5626570 5630388 + MGP_CASTEiJ_P0050833 Lrrn4cl protein_coding protein_coding MGP_CASTEiJ_T0101751.1 MGP_CASTEiJ_G0038550.1 mouse_genomes_project 19 58366837 58367251 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101752.1 MGP_CASTEiJ_G0038550.1 mouse_genomes_project 19 58366837 58369244 + transcribed_unprocessed_pseudogene processed_transcript MGP_CASTEiJ_T0101753.1 MGP_CASTEiJ_G0038550.1 mouse_genomes_project 19 58367002 58383333 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_CASTEiJ_T0100844.1 MGP_CASTEiJ_G0037757.1 mouse_genomes_project 19 46638769 46638886 + Gm26085 snoRNA snoRNA MGP_CASTEiJ_T0051584.1 MGP_CASTEiJ_G0024324.1 mouse_genomes_project 19 40268815 40270967 - MGP_CASTEiJ_P0051584 Frat2 protein_coding protein_coding MGP_CASTEiJ_T0006905.1 MGP_CASTEiJ_G0005684.1 mouse_genomes_project 19 33971559 34058189 - A830019P07Rik lincRNA lincRNA MGP_CASTEiJ_T0050729.1 MGP_CASTEiJ_G0023997.1 mouse_genomes_project 19 4296988 4328443 - MGP_CASTEiJ_P0050729 AI846148 protein_coding protein_coding MGP_CASTEiJ_T0011140.1 MGP_CASTEiJ_G0009328.1 mouse_genomes_project 19 2745754 2745840 - Gm27694 misc_RNA misc_RNA MGP_CASTEiJ_T0050663.1 MGP_CASTEiJ_G0023976.1 mouse_genomes_project 19 3823210 3835248 - MGP_CASTEiJ_P0050663 Esrra protein_coding protein_coding MGP_CASTEiJ_T0050664.1 MGP_CASTEiJ_G0023976.1 mouse_genomes_project 19 3824685 3835201 - MGP_CASTEiJ_P0050664 Esrra protein_coding protein_coding MGP_CASTEiJ_T0050665.1 MGP_CASTEiJ_G0023976.1 mouse_genomes_project 19 3824998 3835253 - Esrra protein_coding processed_transcript MGP_CASTEiJ_T0050666.1 MGP_CASTEiJ_G0023976.1 mouse_genomes_project 19 3833341 3835207 - Esrra protein_coding retained_intron MGP_CASTEiJ_T0050667.1 MGP_CASTEiJ_G0023976.1 mouse_genomes_project 19 3833516 3834491 - MGP_CASTEiJ_P0050667 Esrra protein_coding protein_coding MGP_CASTEiJ_T0050675.1 MGP_CASTEiJ_G0023980.1 mouse_genomes_project 19 3855215 3865942 + MGP_CASTEiJ_P0050675 protein_coding protein_coding MGP_CASTEiJ_T0050676.1 MGP_CASTEiJ_G0023980.1 mouse_genomes_project 19 3855677 3865936 + MGP_CASTEiJ_P0050676 protein_coding protein_coding MGP_CASTEiJ_T0050677.1 MGP_CASTEiJ_G0023980.1 mouse_genomes_project 19 3855855 3865937 + MGP_CASTEiJ_P0050677 protein_coding protein_coding MGP_CASTEiJ_T0050678.1 MGP_CASTEiJ_G0023980.1 mouse_genomes_project 19 3856233 3865296 + MGP_CASTEiJ_P0050678 protein_coding protein_coding MGP_CASTEiJ_T0050679.1 MGP_CASTEiJ_G0023980.1 mouse_genomes_project 19 3864810 3865918 + MGP_CASTEiJ_P0050679 protein_coding protein_coding MGP_CASTEiJ_T0051934.1 MGP_CASTEiJ_G0024435.1 mouse_genomes_project 19 49201957 49419932 - MGP_CASTEiJ_P0051934 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051935.1 MGP_CASTEiJ_G0024435.1 mouse_genomes_project 19 49208544 49757723 - MGP_CASTEiJ_P0051935 protein_coding protein_coding MGP_CASTEiJ_T0051936.1 MGP_CASTEiJ_G0024435.1 mouse_genomes_project 19 49212896 49757723 - MGP_CASTEiJ_P0051936 protein_coding protein_coding MGP_CASTEiJ_T0051937.1 MGP_CASTEiJ_G0024435.1 mouse_genomes_project 19 49216216 49324539 - MGP_CASTEiJ_P0051937 protein_coding protein_coding MGP_CASTEiJ_T0051938.1 MGP_CASTEiJ_G0024435.1 mouse_genomes_project 19 49217910 49757562 - MGP_CASTEiJ_P0051938 protein_coding protein_coding MGP_CASTEiJ_T0051077.1 MGP_CASTEiJ_G0024128.1 mouse_genomes_project 19 9690010 9690955 - MGP_CASTEiJ_P0051077 Olfr1448 protein_coding protein_coding MGP_CASTEiJ_T0016962.1 MGP_CASTEiJ_G0014697.1 mouse_genomes_project 19 9342371 9351224 - A330040F15Rik processed_transcript processed_transcript MGP_CASTEiJ_T0006927.1 MGP_CASTEiJ_G0005700.1 mouse_genomes_project 19 55087591 55156721 - lincRNA lincRNA MGP_CASTEiJ_T0051251.1 MGP_CASTEiJ_G0024212.1 mouse_genomes_project 19 25471497 25652107 - MGP_CASTEiJ_P0051251 Rfx3 protein_coding protein_coding MGP_CASTEiJ_T0051252.1 MGP_CASTEiJ_G0024212.1 mouse_genomes_project 19 25475800 25546789 - Rfx3 protein_coding processed_transcript MGP_CASTEiJ_T0051253.1 MGP_CASTEiJ_G0024212.1 mouse_genomes_project 19 25476113 25625259 - MGP_CASTEiJ_P0051253 Rfx3 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051254.1 MGP_CASTEiJ_G0024212.1 mouse_genomes_project 19 25514996 25741031 - Rfx3 protein_coding retained_intron MGP_CASTEiJ_T0051255.1 MGP_CASTEiJ_G0024212.1 mouse_genomes_project 19 25585020 25740718 - MGP_CASTEiJ_P0051255 Rfx3 protein_coding protein_coding MGP_CASTEiJ_T0052103.1 MGP_CASTEiJ_G0024481.1 mouse_genomes_project 19 58869910 58873780 - MGP_CASTEiJ_P0052103 Vax1 protein_coding protein_coding MGP_CASTEiJ_T0052104.1 MGP_CASTEiJ_G0024481.1 mouse_genomes_project 19 58870321 58870704 - Vax1 protein_coding processed_transcript MGP_CASTEiJ_T0010044.1 MGP_CASTEiJ_G0008232.1 mouse_genomes_project 19 54610345 54610402 + Mir6715 miRNA miRNA MGP_CASTEiJ_T0050275.1 MGP_CASTEiJ_G0023872.1 mouse_genomes_project 19 1371012 1479966 + MGP_CASTEiJ_P0050275 Pcx protein_coding unknown_likely_coding MGP_CASTEiJ_T0050276.1 MGP_CASTEiJ_G0023872.1 mouse_genomes_project 19 1371129 1490953 + MGP_CASTEiJ_P0050276 Pcx protein_coding protein_coding MGP_CASTEiJ_T0050277.1 MGP_CASTEiJ_G0023872.1 mouse_genomes_project 19 1460690 1490953 + MGP_CASTEiJ_P0050277 Pcx protein_coding protein_coding MGP_CASTEiJ_T0099608.1 MGP_CASTEiJ_G0036521.1 mouse_genomes_project 19 40413448 40413547 + Gm23113 snRNA snRNA MGP_CASTEiJ_T0051157.1 MGP_CASTEiJ_G0024175.1 mouse_genomes_project 19 17855064 17897662 + MGP_CASTEiJ_P0051157 Aldh1a1 protein_coding protein_coding MGP_CASTEiJ_T0010033.1 MGP_CASTEiJ_G0008221.1 mouse_genomes_project 19 40733391 40733490 + Gm26339 miRNA miRNA MGP_CASTEiJ_T0050082.1 MGP_CASTEiJ_G0023827.1 mouse_genomes_project 19 6921 30534 - MGP_CASTEiJ_P0050082 Ighmbp2 protein_coding protein_coding MGP_CASTEiJ_T0050083.1 MGP_CASTEiJ_G0023827.1 mouse_genomes_project 19 12670 30595 - MGP_CASTEiJ_P0050083 Ighmbp2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050084.1 MGP_CASTEiJ_G0023827.1 mouse_genomes_project 19 12677 30728 - MGP_CASTEiJ_P0050084 Ighmbp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050085.1 MGP_CASTEiJ_G0023827.1 mouse_genomes_project 19 13223 15569 - Ighmbp2 protein_coding retained_intron MGP_CASTEiJ_T0098856.1 MGP_CASTEiJ_G0035781.1 mouse_genomes_project 19 55313241 55317269 + Ppnr sense_intronic sense_intronic MGP_CASTEiJ_T0052033.1 MGP_CASTEiJ_G0024462.1 mouse_genomes_project 19 56062945 56116319 + MGP_CASTEiJ_P0052033 Nhlrc2 protein_coding protein_coding MGP_CASTEiJ_T0052034.1 MGP_CASTEiJ_G0024462.1 mouse_genomes_project 19 56063342 56130930 + MGP_CASTEiJ_P0052034 Nhlrc2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050474.1 MGP_CASTEiJ_G0023944.1 mouse_genomes_project 19 3026979 3031006 - MGP_CASTEiJ_P0050474 Mrpl49 protein_coding protein_coding MGP_CASTEiJ_T0006873.1 MGP_CASTEiJ_G0005665.1 mouse_genomes_project 19 2742443 2749431 - Malat1 lincRNA lincRNA MGP_CASTEiJ_T0006874.1 MGP_CASTEiJ_G0005665.1 mouse_genomes_project 19 2742444 2744218 - Malat1 lincRNA lincRNA MGP_CASTEiJ_T0006875.1 MGP_CASTEiJ_G0005665.1 mouse_genomes_project 19 2742447 2743706 - Malat1 lincRNA lincRNA MGP_CASTEiJ_T0006876.1 MGP_CASTEiJ_G0005665.1 mouse_genomes_project 19 2748670 2749430 - Malat1 lincRNA lincRNA MGP_CASTEiJ_T0006877.1 MGP_CASTEiJ_G0005665.1 mouse_genomes_project 19 2748697 2749399 - Malat1 lincRNA lincRNA MGP_CASTEiJ_T0050285.1 MGP_CASTEiJ_G0023876.1 mouse_genomes_project 19 1588622 1630339 + MGP_CASTEiJ_P0050285 Sptbn2 protein_coding protein_coding MGP_CASTEiJ_T0051794.1 MGP_CASTEiJ_G0024391.1 mouse_genomes_project 19 44553906 44754221 - MGP_CASTEiJ_P0051794 9130011E15Rik protein_coding protein_coding MGP_CASTEiJ_T0051775.1 MGP_CASTEiJ_G0024387.1 mouse_genomes_project 19 44459465 44465566 - MGP_CASTEiJ_P0051775 Fgf8 protein_coding protein_coding MGP_CASTEiJ_T0051776.1 MGP_CASTEiJ_G0024387.1 mouse_genomes_project 19 44459480 44465607 - MGP_CASTEiJ_P0051776 Fgf8 protein_coding protein_coding MGP_CASTEiJ_T0051777.1 MGP_CASTEiJ_G0024387.1 mouse_genomes_project 19 44459485 44465565 - MGP_CASTEiJ_P0051777 Fgf8 protein_coding protein_coding MGP_CASTEiJ_T0051778.1 MGP_CASTEiJ_G0024387.1 mouse_genomes_project 19 44459596 44465550 - MGP_CASTEiJ_P0051778 Fgf8 protein_coding protein_coding MGP_CASTEiJ_T0051779.1 MGP_CASTEiJ_G0024387.1 mouse_genomes_project 19 44459631 44465366 - MGP_CASTEiJ_P0051779 Fgf8 protein_coding protein_coding MGP_CASTEiJ_T0051780.1 MGP_CASTEiJ_G0024387.1 mouse_genomes_project 19 44459650 44465366 - MGP_CASTEiJ_P0051780 Fgf8 protein_coding protein_coding MGP_CASTEiJ_T0051400.1 MGP_CASTEiJ_G0024262.1 mouse_genomes_project 19 32604273 32631528 + MGP_CASTEiJ_P0051400 Ifit2 protein_coding protein_coding MGP_CASTEiJ_T0051401.1 MGP_CASTEiJ_G0024262.1 mouse_genomes_project 19 32604289 32634756 + MGP_CASTEiJ_P0051401 Ifit2 protein_coding protein_coding MGP_CASTEiJ_T0051926.1 MGP_CASTEiJ_G0024432.1 mouse_genomes_project 19 46788573 46811173 + MGP_CASTEiJ_P0051926 Gsto2 protein_coding protein_coding MGP_CASTEiJ_T0051927.1 MGP_CASTEiJ_G0024432.1 mouse_genomes_project 19 46788795 46811173 + MGP_CASTEiJ_P0051927 Gsto2 protein_coding protein_coding MGP_CASTEiJ_T0051928.1 MGP_CASTEiJ_G0024432.1 mouse_genomes_project 19 46793286 46809559 + MGP_CASTEiJ_P0051928 Gsto2 protein_coding protein_coding MGP_CASTEiJ_T0102195.1 MGP_CASTEiJ_G0038920.1 mouse_genomes_project 19 8925142 8992459 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0100822.1 MGP_CASTEiJ_G0037735.1 mouse_genomes_project 19 5493386 5493458 + Gm24452 snoRNA snoRNA MGP_CASTEiJ_T0051975.1 MGP_CASTEiJ_G0024449.1 mouse_genomes_project 19 53376060 53379865 + MGP_CASTEiJ_P0051975 Adra2a protein_coding protein_coding MGP_CASTEiJ_T0051123.1 MGP_CASTEiJ_G0024164.1 mouse_genomes_project 19 13994315 14278035 + MGP_CASTEiJ_P0051123 Prune2 protein_coding protein_coding MGP_CASTEiJ_T0051124.1 MGP_CASTEiJ_G0024164.1 mouse_genomes_project 19 14188050 14278044 + MGP_CASTEiJ_P0051124 Prune2 protein_coding unknown_likely_coding MGP_CASTEiJ_T0100843.1 MGP_CASTEiJ_G0037756.1 mouse_genomes_project 19 45161714 45161823 + Gm24610 snoRNA snoRNA MGP_CASTEiJ_T0006910.1 MGP_CASTEiJ_G0005688.1 mouse_genomes_project 19 39222475 39228128 + E030044B06Rik lincRNA lincRNA MGP_CASTEiJ_T0050246.1 MGP_CASTEiJ_G0023867.1 mouse_genomes_project 19 1128185 1147966 - MGP_CASTEiJ_P0050246 Adrbk1 protein_coding protein_coding MGP_CASTEiJ_T0050247.1 MGP_CASTEiJ_G0023867.1 mouse_genomes_project 19 1128185 1148041 - MGP_CASTEiJ_P0050247 Adrbk1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050248.1 MGP_CASTEiJ_G0023867.1 mouse_genomes_project 19 1128186 1148233 - MGP_CASTEiJ_P0050248 Adrbk1 protein_coding protein_coding MGP_CASTEiJ_T0050249.1 MGP_CASTEiJ_G0023867.1 mouse_genomes_project 19 1128205 1148225 - MGP_CASTEiJ_P0050249 Adrbk1 protein_coding protein_coding MGP_CASTEiJ_T0050250.1 MGP_CASTEiJ_G0023867.1 mouse_genomes_project 19 1130392 1131392 - MGP_CASTEiJ_P0050250 Adrbk1 protein_coding protein_coding MGP_CASTEiJ_T0050251.1 MGP_CASTEiJ_G0023867.1 mouse_genomes_project 19 1130422 1132485 - MGP_CASTEiJ_P0050251 Adrbk1 protein_coding protein_coding MGP_CASTEiJ_T0050252.1 MGP_CASTEiJ_G0023867.1 mouse_genomes_project 19 1132463 1133813 - Adrbk1 protein_coding retained_intron MGP_CASTEiJ_T0050253.1 MGP_CASTEiJ_G0023867.1 mouse_genomes_project 19 1133348 1148038 - Adrbk1 protein_coding retained_intron MGP_CASTEiJ_T0050254.1 MGP_CASTEiJ_G0023867.1 mouse_genomes_project 19 1134558 1147204 - MGP_CASTEiJ_P0050254 Adrbk1 protein_coding protein_coding MGP_CASTEiJ_T0050772.1 MGP_CASTEiJ_G0024012.1 mouse_genomes_project 19 5509083 5509592 + MGP_CASTEiJ_P0050772 1700092M07Rik protein_coding protein_coding MGP_CASTEiJ_T0050773.1 MGP_CASTEiJ_G0024012.1 mouse_genomes_project 19 5509127 5509591 + 1700092M07Rik protein_coding retained_intron MGP_CASTEiJ_T0050465.1 MGP_CASTEiJ_G0023942.1 mouse_genomes_project 19 2952911 2982558 - MGP_CASTEiJ_P0050465 Capn1 protein_coding protein_coding MGP_CASTEiJ_T0050466.1 MGP_CASTEiJ_G0023942.1 mouse_genomes_project 19 2952911 2981981 - MGP_CASTEiJ_P0050466 Capn1 protein_coding protein_coding MGP_CASTEiJ_T0050999.1 MGP_CASTEiJ_G0024088.1 mouse_genomes_project 19 8168113 8192970 + protein_coding processed_transcript MGP_CASTEiJ_T0051000.1 MGP_CASTEiJ_G0024088.1 mouse_genomes_project 19 8168215 8169337 + protein_coding processed_transcript MGP_CASTEiJ_T0051001.1 MGP_CASTEiJ_G0024088.1 mouse_genomes_project 19 8168284 8169226 + protein_coding retained_intron MGP_CASTEiJ_T0051002.1 MGP_CASTEiJ_G0024088.1 mouse_genomes_project 19 8174553 8201711 + MGP_CASTEiJ_P0051002 protein_coding protein_coding MGP_CASTEiJ_T0051003.1 MGP_CASTEiJ_G0024088.1 mouse_genomes_project 19 8174553 8199220 + MGP_CASTEiJ_P0051003 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051004.1 MGP_CASTEiJ_G0024088.1 mouse_genomes_project 19 8174565 8194797 + protein_coding retained_intron MGP_CASTEiJ_T0051005.1 MGP_CASTEiJ_G0024088.1 mouse_genomes_project 19 8186896 8192906 + MGP_CASTEiJ_P0051005 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051006.1 MGP_CASTEiJ_G0024088.1 mouse_genomes_project 19 8189216 8201711 + MGP_CASTEiJ_P0051006 protein_coding protein_coding MGP_CASTEiJ_T0003730.1 MGP_CASTEiJ_G0003350.1 mouse_genomes_project 19 3554691 3555837 - Gm14967 antisense antisense MGP_CASTEiJ_T0051566.1 MGP_CASTEiJ_G0024316.1 mouse_genomes_project 19 39450788 39575686 - MGP_CASTEiJ_P0051566 Tll2 protein_coding protein_coding MGP_CASTEiJ_T0051567.1 MGP_CASTEiJ_G0024316.1 mouse_genomes_project 19 39450788 39575686 - MGP_CASTEiJ_P0051567 Tll2 protein_coding protein_coding MGP_CASTEiJ_T0050771.1 MGP_CASTEiJ_G0024011.1 mouse_genomes_project 19 5504419 5508989 + MGP_CASTEiJ_P0050771 protein_coding protein_coding MGP_CASTEiJ_T0012968.1 MGP_CASTEiJ_G0011131.1 mouse_genomes_project 19 4656401 4657517 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0100839.1 MGP_CASTEiJ_G0037752.1 mouse_genomes_project 19 33895328 33895461 - Gm25611 snoRNA snoRNA MGP_CASTEiJ_T0051044.1 MGP_CASTEiJ_G0024109.1 mouse_genomes_project 19 9006897 9007836 - MGP_CASTEiJ_P0051044 Olfr262 protein_coding protein_coding MGP_CASTEiJ_T0010047.1 MGP_CASTEiJ_G0008235.1 mouse_genomes_project 19 60337269 60337358 + Gm25238 miRNA miRNA MGP_CASTEiJ_T0050529.1 MGP_CASTEiJ_G0023957.1 mouse_genomes_project 19 3114359 3120797 - Arl2 protein_coding retained_intron MGP_CASTEiJ_T0050530.1 MGP_CASTEiJ_G0023957.1 mouse_genomes_project 19 3114368 3121062 - MGP_CASTEiJ_P0050530 Arl2 protein_coding protein_coding MGP_CASTEiJ_T0050531.1 MGP_CASTEiJ_G0023957.1 mouse_genomes_project 19 3117312 3118014 - Arl2 protein_coding retained_intron MGP_CASTEiJ_T0102194.1 MGP_CASTEiJ_G0038919.1 mouse_genomes_project 19 8264360 8268050 + unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0051186.1 MGP_CASTEiJ_G0024186.1 mouse_genomes_project 19 20620161 20698522 - MGP_CASTEiJ_P0051186 Smc5 protein_coding protein_coding MGP_CASTEiJ_T0051429.1 MGP_CASTEiJ_G0024273.1 mouse_genomes_project 19 34953693 34958681 - MGP_CASTEiJ_P0051429 Ppp1r3c protein_coding protein_coding MGP_CASTEiJ_T0050175.1 MGP_CASTEiJ_G0023847.1 mouse_genomes_project 19 868491 871933 - MGP_CASTEiJ_P0050175 protein_coding protein_coding MGP_CASTEiJ_T0000979.1 MGP_CASTEiJ_G0000915.1 mouse_genomes_project 19 11568015 11568282 + TEC TEC MGP_CASTEiJ_T0010009.1 MGP_CASTEiJ_G0008197.1 mouse_genomes_project 19 3351570 3351635 + Mir6989 miRNA miRNA MGP_CASTEiJ_T0050228.1 MGP_CASTEiJ_G0023860.1 mouse_genomes_project 19 1020183 1028960 - MGP_CASTEiJ_P0050228 Tbc1d10c protein_coding protein_coding MGP_CASTEiJ_T0051189.1 MGP_CASTEiJ_G0024189.1 mouse_genomes_project 19 21131074 21132670 + MGP_CASTEiJ_P0051189 protein_coding protein_coding MGP_CASTEiJ_T0051667.1 MGP_CASTEiJ_G0024350.1 mouse_genomes_project 19 42190546 42202349 - MGP_CASTEiJ_P0051667 Slc25a28 protein_coding protein_coding MGP_CASTEiJ_T0012990.1 MGP_CASTEiJ_G0011153.1 mouse_genomes_project 19 30499284 30530839 + processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0052132.1 MGP_CASTEiJ_G0024495.1 mouse_genomes_project 19 60672456 60880323 + MGP_CASTEiJ_P0052132 Grk5 protein_coding protein_coding MGP_CASTEiJ_T0050267.1 MGP_CASTEiJ_G0023869.1 mouse_genomes_project 19 1278400 1292405 - MGP_CASTEiJ_P0050267 Rhod protein_coding protein_coding MGP_CASTEiJ_T0050268.1 MGP_CASTEiJ_G0023869.1 mouse_genomes_project 19 1278608 1292394 - MGP_CASTEiJ_P0050268 Rhod protein_coding protein_coding MGP_CASTEiJ_T0050269.1 MGP_CASTEiJ_G0023869.1 mouse_genomes_project 19 1279168 1279497 - Rhod protein_coding processed_transcript MGP_CASTEiJ_T0003731.1 MGP_CASTEiJ_G0003351.1 mouse_genomes_project 19 4235931 4242879 + Gm17227 antisense antisense MGP_CASTEiJ_T0003732.1 MGP_CASTEiJ_G0003351.1 mouse_genomes_project 19 4236010 4242701 + Gm17227 antisense antisense MGP_CASTEiJ_T0051096.1 MGP_CASTEiJ_G0024147.1 mouse_genomes_project 19 10621023 10621971 + MGP_CASTEiJ_P0051096 Olfr1494 protein_coding protein_coding MGP_CASTEiJ_T0016977.1 MGP_CASTEiJ_G0014703.1 mouse_genomes_project 19 45051145 45054279 - Gm16726 processed_transcript processed_transcript MGP_CASTEiJ_T0010026.1 MGP_CASTEiJ_G0008214.1 mouse_genomes_project 19 32432114 32432223 - Gm23060 miRNA miRNA MGP_CASTEiJ_T0050856.1 MGP_CASTEiJ_G0024032.1 mouse_genomes_project 19 5731576 5741631 + MGP_CASTEiJ_P0050856 Mta2 protein_coding protein_coding MGP_CASTEiJ_T0050857.1 MGP_CASTEiJ_G0024032.1 mouse_genomes_project 19 5732194 5735626 + Mta2 protein_coding processed_transcript MGP_CASTEiJ_T0050858.1 MGP_CASTEiJ_G0024032.1 mouse_genomes_project 19 5732207 5736493 + Mta2 protein_coding processed_transcript MGP_CASTEiJ_T0050859.1 MGP_CASTEiJ_G0024032.1 mouse_genomes_project 19 5733736 5736901 + Mta2 protein_coding retained_intron MGP_CASTEiJ_T0050860.1 MGP_CASTEiJ_G0024032.1 mouse_genomes_project 19 5734841 5736514 + Mta2 protein_coding processed_transcript MGP_CASTEiJ_T0050861.1 MGP_CASTEiJ_G0024032.1 mouse_genomes_project 19 5736165 5737463 + Mta2 protein_coding retained_intron MGP_CASTEiJ_T0006909.1 MGP_CASTEiJ_G0005687.1 mouse_genomes_project 19 38929252 38934484 + Gm27042 lincRNA lincRNA MGP_CASTEiJ_T0050736.1 MGP_CASTEiJ_G0023999.1 mouse_genomes_project 19 4377140 4444128 - MGP_CASTEiJ_P0050736 Rtn3 protein_coding protein_coding MGP_CASTEiJ_T0050737.1 MGP_CASTEiJ_G0023999.1 mouse_genomes_project 19 4377140 4444128 - MGP_CASTEiJ_P0050737 Rtn3 protein_coding protein_coding MGP_CASTEiJ_T0050738.1 MGP_CASTEiJ_G0023999.1 mouse_genomes_project 19 4377140 4444120 - MGP_CASTEiJ_P0050738 Rtn3 protein_coding protein_coding MGP_CASTEiJ_T0050739.1 MGP_CASTEiJ_G0023999.1 mouse_genomes_project 19 4378266 4444058 - MGP_CASTEiJ_P0050739 Rtn3 protein_coding protein_coding MGP_CASTEiJ_T0050096.1 MGP_CASTEiJ_G0023832.1 mouse_genomes_project 19 211155 344182 - MGP_CASTEiJ_P0050096 Ppp6r3 protein_coding protein_coding MGP_CASTEiJ_T0050097.1 MGP_CASTEiJ_G0023832.1 mouse_genomes_project 19 211155 344182 - MGP_CASTEiJ_P0050097 Ppp6r3 protein_coding protein_coding MGP_CASTEiJ_T0050098.1 MGP_CASTEiJ_G0023832.1 mouse_genomes_project 19 211155 344182 - MGP_CASTEiJ_P0050098 Ppp6r3 protein_coding protein_coding MGP_CASTEiJ_T0051546.1 MGP_CASTEiJ_G0024310.1 mouse_genomes_project 19 38953269 38955031 + Entpd1 protein_coding processed_transcript MGP_CASTEiJ_T0051547.1 MGP_CASTEiJ_G0024310.1 mouse_genomes_project 19 38953292 38956502 + Entpd1 protein_coding processed_transcript MGP_CASTEiJ_T0051548.1 MGP_CASTEiJ_G0024310.1 mouse_genomes_project 19 38953300 39083117 + MGP_CASTEiJ_P0051548 Entpd1 protein_coding protein_coding MGP_CASTEiJ_T0051549.1 MGP_CASTEiJ_G0024310.1 mouse_genomes_project 19 38997573 39084865 + MGP_CASTEiJ_P0051549 Entpd1 protein_coding protein_coding MGP_CASTEiJ_T0051550.1 MGP_CASTEiJ_G0024310.1 mouse_genomes_project 19 38997602 39068348 + MGP_CASTEiJ_P0051550 Entpd1 protein_coding protein_coding MGP_CASTEiJ_T0051551.1 MGP_CASTEiJ_G0024310.1 mouse_genomes_project 19 38997647 39082407 + MGP_CASTEiJ_P0051551 Entpd1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0051552.1 MGP_CASTEiJ_G0024310.1 mouse_genomes_project 19 38998002 39053303 + Entpd1 protein_coding processed_transcript MGP_CASTEiJ_T0051553.1 MGP_CASTEiJ_G0024310.1 mouse_genomes_project 19 38998305 39066400 + Entpd1 protein_coding processed_transcript MGP_CASTEiJ_T0051554.1 MGP_CASTEiJ_G0024310.1 mouse_genomes_project 19 39023269 39066496 + Entpd1 protein_coding processed_transcript MGP_CASTEiJ_T0051555.1 MGP_CASTEiJ_G0024310.1 mouse_genomes_project 19 39069371 39083078 + MGP_CASTEiJ_P0051555 Entpd1 protein_coding protein_coding MGP_CASTEiJ_T0051556.1 MGP_CASTEiJ_G0024310.1 mouse_genomes_project 19 39079515 39080196 + Entpd1 protein_coding processed_transcript MGP_CASTEiJ_T0050764.1 MGP_CASTEiJ_G0024010.1 mouse_genomes_project 19 5475489 5491951 - MGP_CASTEiJ_P0050764 Slc3a2 protein_coding protein_coding MGP_CASTEiJ_T0050765.1 MGP_CASTEiJ_G0024010.1 mouse_genomes_project 19 5477219 5481315 - MGP_CASTEiJ_P0050765 Slc3a2 protein_coding protein_coding MGP_CASTEiJ_T0050766.1 MGP_CASTEiJ_G0024010.1 mouse_genomes_project 19 5477645 5481316 - MGP_CASTEiJ_P0050766 Slc3a2 protein_coding protein_coding MGP_CASTEiJ_T0050767.1 MGP_CASTEiJ_G0024010.1 mouse_genomes_project 19 5477677 5482393 - MGP_CASTEiJ_P0050767 Slc3a2 protein_coding protein_coding MGP_CASTEiJ_T0050768.1 MGP_CASTEiJ_G0024010.1 mouse_genomes_project 19 5481116 5492054 - Slc3a2 protein_coding retained_intron MGP_CASTEiJ_T0050769.1 MGP_CASTEiJ_G0024010.1 mouse_genomes_project 19 5481368 5482056 - MGP_CASTEiJ_P0050769 Slc3a2 protein_coding protein_coding MGP_CASTEiJ_T0050770.1 MGP_CASTEiJ_G0024010.1 mouse_genomes_project 19 5481379 5482143 - MGP_CASTEiJ_P0050770 Slc3a2 protein_coding protein_coding MGP_CASTEiJ_T0003743.1 MGP_CASTEiJ_G0003359.1 mouse_genomes_project 19 37160522 37164400 - Gm28991 antisense antisense MGP_CASTEiJ_T0051146.1 MGP_CASTEiJ_G0024173.1 mouse_genomes_project 19 16100127 16174437 - MGP_CASTEiJ_P0051146 Rorb protein_coding protein_coding MGP_CASTEiJ_T0051147.1 MGP_CASTEiJ_G0024173.1 mouse_genomes_project 19 16107371 16290005 - MGP_CASTEiJ_P0051147 Rorb protein_coding protein_coding MGP_CASTEiJ_T0051148.1 MGP_CASTEiJ_G0024173.1 mouse_genomes_project 19 16147550 16174420 - Rorb protein_coding retained_intron MGP_CASTEiJ_T0051149.1 MGP_CASTEiJ_G0024173.1 mouse_genomes_project 19 16147564 16174431 - Rorb protein_coding retained_intron MGP_CASTEiJ_T0051754.1 MGP_CASTEiJ_G0024380.1 mouse_genomes_project 19 43744629 43748676 + MGP_CASTEiJ_P0051754 Kazald1 protein_coding protein_coding MGP_CASTEiJ_T0051755.1 MGP_CASTEiJ_G0024380.1 mouse_genomes_project 19 43745527 43748676 + MGP_CASTEiJ_P0051755 Kazald1 protein_coding protein_coding MGP_CASTEiJ_T0098854.1 MGP_CASTEiJ_G0035779.1 mouse_genomes_project 19 26349032 26351795 - 4933413C19Rik sense_intronic sense_intronic MGP_CASTEiJ_T0100840.1 MGP_CASTEiJ_G0037753.1 mouse_genomes_project 19 36429650 36429786 + Gm23300 snoRNA snoRNA MGP_CASTEiJ_T0051281.1 MGP_CASTEiJ_G0024218.1 mouse_genomes_project 19 26815097 26842175 - MGP_CASTEiJ_P0051281 Ak3 protein_coding protein_coding MGP_CASTEiJ_T0051282.1 MGP_CASTEiJ_G0024218.1 mouse_genomes_project 19 26820167 26821511 - MGP_CASTEiJ_P0051282 Ak3 protein_coding protein_coding MGP_CASTEiJ_T0051047.1 MGP_CASTEiJ_G0024112.1 mouse_genomes_project 19 9195901 9200108 + MGP_CASTEiJ_P0051047 Pfpl protein_coding protein_coding MGP_CASTEiJ_T0016966.1 MGP_CASTEiJ_G0014700.1 mouse_genomes_project 19 25722475 25723973 + Gm20407 processed_transcript processed_transcript MGP_CASTEiJ_T0052095.1 MGP_CASTEiJ_G0024477.1 mouse_genomes_project 19 58461811 58470377 - MGP_CASTEiJ_P0052095 1700019N19Rik protein_coding protein_coding MGP_CASTEiJ_T0052096.1 MGP_CASTEiJ_G0024477.1 mouse_genomes_project 19 58462004 58469184 - MGP_CASTEiJ_P0052096 1700019N19Rik protein_coding protein_coding MGP_CASTEiJ_T0098564.1 MGP_CASTEiJ_G0035495.1 mouse_genomes_project 19 42488517 42488634 + n-R5s21 rRNA rRNA MGP_CASTEiJ_T0052054.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56582650 56774965 - MGP_CASTEiJ_P0052054 Ablim1 protein_coding protein_coding MGP_CASTEiJ_T0052055.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56582807 56670511 - MGP_CASTEiJ_P0052055 Ablim1 protein_coding protein_coding MGP_CASTEiJ_T0052056.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56583186 56670511 - MGP_CASTEiJ_P0052056 Ablim1 protein_coding protein_coding MGP_CASTEiJ_T0052057.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56583193 56754972 - MGP_CASTEiJ_P0052057 Ablim1 protein_coding protein_coding MGP_CASTEiJ_T0052058.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56586202 56799421 - MGP_CASTEiJ_P0052058 Ablim1 protein_coding protein_coding MGP_CASTEiJ_T0052059.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56586353 56670509 - MGP_CASTEiJ_P0052059 Ablim1 protein_coding protein_coding MGP_CASTEiJ_T0052060.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56586414 56670416 - MGP_CASTEiJ_P0052060 Ablim1 protein_coding protein_coding MGP_CASTEiJ_T0052061.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56586631 56754797 - MGP_CASTEiJ_P0052061 Ablim1 protein_coding protein_coding MGP_CASTEiJ_T0052062.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56586913 56799953 - MGP_CASTEiJ_P0052062 Ablim1 protein_coding protein_coding MGP_CASTEiJ_T0052063.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56586951 56774898 - MGP_CASTEiJ_P0052063 Ablim1 protein_coding protein_coding MGP_CASTEiJ_T0052064.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56587087 56754732 - MGP_CASTEiJ_P0052064 Ablim1 protein_coding protein_coding MGP_CASTEiJ_T0052065.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56587129 56754837 - MGP_CASTEiJ_P0052065 Ablim1 protein_coding protein_coding MGP_CASTEiJ_T0052066.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56587198 56879018 - Ablim1 protein_coding retained_intron MGP_CASTEiJ_T0052067.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56590390 56598207 - Ablim1 protein_coding processed_transcript MGP_CASTEiJ_T0052068.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56592003 56595920 - Ablim1 protein_coding retained_intron MGP_CASTEiJ_T0052069.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56611968 56687287 - Ablim1 protein_coding retained_intron MGP_CASTEiJ_T0052070.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56628234 56687256 - Ablim1 protein_coding processed_transcript MGP_CASTEiJ_T0052071.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56667535 56670526 - Ablim1 protein_coding processed_transcript MGP_CASTEiJ_T0052072.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56682777 56687287 - Ablim1 protein_coding processed_transcript MGP_CASTEiJ_T0052073.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56683119 56879010 - MGP_CASTEiJ_P0052073 Ablim1 protein_coding protein_coding MGP_CASTEiJ_T0052074.1 MGP_CASTEiJ_G0024468.1 mouse_genomes_project 19 56683368 56739591 - MGP_CASTEiJ_P0052074 Ablim1 protein_coding protein_coding MGP_CASTEiJ_T0011145.1 MGP_CASTEiJ_G0009333.1 mouse_genomes_project 19 14104308 14104715 - Gm27970 misc_RNA misc_RNA MGP_CASTEiJ_T0012986.1 MGP_CASTEiJ_G0011149.1 mouse_genomes_project 19 26519593 26519986 - processed_pseudogene processed_pseudogene MGP_CASTEiJ_T0050377.1 MGP_CASTEiJ_G0023916.1 mouse_genomes_project 19 2408192 2411804 + MGP_CASTEiJ_P0050377 Efemp2 protein_coding protein_coding MGP_CASTEiJ_T0050378.1 MGP_CASTEiJ_G0023916.1 mouse_genomes_project 19 2408534 2410296 + MGP_CASTEiJ_P0050378 Efemp2 protein_coding protein_coding MGP_CASTEiJ_T0050379.1 MGP_CASTEiJ_G0023916.1 mouse_genomes_project 19 2408911 2416054 + MGP_CASTEiJ_P0050379 Efemp2 protein_coding protein_coding MGP_CASTEiJ_T0050380.1 MGP_CASTEiJ_G0023916.1 mouse_genomes_project 19 2408930 2412582 + Efemp2 protein_coding retained_intron MGP_CASTEiJ_T0050381.1 MGP_CASTEiJ_G0023916.1 mouse_genomes_project 19 2408970 2416054 + MGP_CASTEiJ_P0050381 Efemp2 protein_coding protein_coding MGP_CASTEiJ_T0050382.1 MGP_CASTEiJ_G0023916.1 mouse_genomes_project 19 2408970 2414942 + MGP_CASTEiJ_P0050382 Efemp2 protein_coding protein_coding MGP_CASTEiJ_T0050383.1 MGP_CASTEiJ_G0023916.1 mouse_genomes_project 19 2408974 2412484 + MGP_CASTEiJ_P0050383 Efemp2 protein_coding protein_coding MGP_CASTEiJ_T0050384.1 MGP_CASTEiJ_G0023916.1 mouse_genomes_project 19 2408977 2416054 + MGP_CASTEiJ_P0050384 Efemp2 protein_coding protein_coding MGP_CASTEiJ_T0050385.1 MGP_CASTEiJ_G0023916.1 mouse_genomes_project 19 2409004 2409696 + Efemp2 protein_coding retained_intron MGP_CASTEiJ_T0050386.1 MGP_CASTEiJ_G0023916.1 mouse_genomes_project 19 2409295 2412548 + MGP_CASTEiJ_P0050386 Efemp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050387.1 MGP_CASTEiJ_G0023916.1 mouse_genomes_project 19 2409347 2415976 + MGP_CASTEiJ_P0050387 Efemp2 protein_coding protein_coding MGP_CASTEiJ_T0050388.1 MGP_CASTEiJ_G0023916.1 mouse_genomes_project 19 2409532 2414280 + MGP_CASTEiJ_P0050388 Efemp2 protein_coding protein_coding MGP_CASTEiJ_T0050389.1 MGP_CASTEiJ_G0023916.1 mouse_genomes_project 19 2414245 2415117 + MGP_CASTEiJ_P0050389 Efemp2 protein_coding protein_coding MGP_CASTEiJ_T0050390.1 MGP_CASTEiJ_G0023916.1 mouse_genomes_project 19 2414323 2415860 + MGP_CASTEiJ_P0050390 Efemp2 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052131.1 MGP_CASTEiJ_G0024494.1 mouse_genomes_project 19 60643898 60656283 - MGP_CASTEiJ_P0052131 Prdx3 protein_coding protein_coding MGP_CASTEiJ_T0098559.1 MGP_CASTEiJ_G0035490.1 mouse_genomes_project 19 3124286 3124406 + n-R5s19 rRNA rRNA MGP_CASTEiJ_T0051094.1 MGP_CASTEiJ_G0024145.1 mouse_genomes_project 19 10522018 10522969 + MGP_CASTEiJ_P0051094 Olfr1490 protein_coding protein_coding MGP_CASTEiJ_T0100842.1 MGP_CASTEiJ_G0037755.1 mouse_genomes_project 19 42688064 42688210 - Gm24336 snoRNA snoRNA MGP_CASTEiJ_T0099603.1 MGP_CASTEiJ_G0036516.1 mouse_genomes_project 19 27855690 27855856 + Gm26046 snRNA snRNA MGP_CASTEiJ_T0003747.1 MGP_CASTEiJ_G0003361.1 mouse_genomes_project 19 43412786 43423472 - Gm20395 antisense antisense MGP_CASTEiJ_T0102196.1 MGP_CASTEiJ_G0038921.1 mouse_genomes_project 19 31543413 31580600 - unprocessed_pseudogene unprocessed_pseudogene MGP_CASTEiJ_T0050653.1 MGP_CASTEiJ_G0023973.1 mouse_genomes_project 19 3749471 3762899 - MGP_CASTEiJ_P0050653 Ccdc88b protein_coding unknown_likely_coding MGP_CASTEiJ_T0050654.1 MGP_CASTEiJ_G0023973.1 mouse_genomes_project 19 3751894 3765518 - MGP_CASTEiJ_P0050654 Ccdc88b protein_coding protein_coding MGP_CASTEiJ_T0003752.1 MGP_CASTEiJ_G0003366.1 mouse_genomes_project 19 46526696 46537415 - Gm16068 antisense antisense MGP_CASTEiJ_T0006931.1 MGP_CASTEiJ_G0005704.1 mouse_genomes_project 19 59628175 59633012 - Gm17203 lincRNA lincRNA MGP_CASTEiJ_T0051585.1 MGP_CASTEiJ_G0024325.1 mouse_genomes_project 19 40283286 40324738 - MGP_CASTEiJ_P0051585 Rrp12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051586.1 MGP_CASTEiJ_G0024325.1 mouse_genomes_project 19 40286689 40324814 - MGP_CASTEiJ_P0051586 Rrp12 protein_coding protein_coding MGP_CASTEiJ_T0051587.1 MGP_CASTEiJ_G0024325.1 mouse_genomes_project 19 40291405 40324779 - MGP_CASTEiJ_P0051587 Rrp12 protein_coding unknown_likely_coding MGP_CASTEiJ_T0051726.1 MGP_CASTEiJ_G0024369.1 mouse_genomes_project 19 43164129 43173227 - MGP_CASTEiJ_P0051726 Gm20538 protein_coding protein_coding MGP_CASTEiJ_T0051709.1 MGP_CASTEiJ_G0024360.1 mouse_genomes_project 19 42682780 42709596 - MGP_CASTEiJ_P0051709 Cwf19l1 protein_coding protein_coding MGP_CASTEiJ_T0051122.1 MGP_CASTEiJ_G0024163.1 mouse_genomes_project 19 13902614 13904129 - MGP_CASTEiJ_P0051122 Foxb2 protein_coding protein_coding MGP_CASTEiJ_T0050430.1 MGP_CASTEiJ_G0023928.1 mouse_genomes_project 19 2632327 2646078 + MGP_CASTEiJ_P0050430 Map3k11 protein_coding protein_coding MGP_CASTEiJ_T0003740.1 MGP_CASTEiJ_G0003357.1 mouse_genomes_project 19 26840456 26842941 + 1700018L02Rik antisense antisense MGP_CASTEiJ_T0050703.1 MGP_CASTEiJ_G0023993.1 mouse_genomes_project 19 4149365 4151802 - MGP_CASTEiJ_P0050703 Cox8a protein_coding protein_coding MGP_CASTEiJ_T0051916.1 MGP_CASTEiJ_G0024430.1 mouse_genomes_project 19 46667947 46767536 - MGP_CASTEiJ_P0051916 Cfap43 protein_coding protein_coding MGP_CASTEiJ_T0051917.1 MGP_CASTEiJ_G0024430.1 mouse_genomes_project 19 46667992 46692273 - Cfap43 protein_coding processed_transcript MGP_CASTEiJ_T0051918.1 MGP_CASTEiJ_G0024430.1 mouse_genomes_project 19 46667992 46692273 - Cfap43 protein_coding processed_transcript MGP_CASTEiJ_T0051919.1 MGP_CASTEiJ_G0024430.1 mouse_genomes_project 19 46683063 46692281 - Cfap43 protein_coding processed_transcript MGP_CASTEiJ_T0051920.1 MGP_CASTEiJ_G0024430.1 mouse_genomes_project 19 46718589 46844709 - Cfap43 protein_coding retained_intron MGP_CASTEiJ_T0051921.1 MGP_CASTEiJ_G0024430.1 mouse_genomes_project 19 46729080 46740620 - Cfap43 protein_coding processed_transcript MGP_CASTEiJ_T0051922.1 MGP_CASTEiJ_G0024430.1 mouse_genomes_project 19 46753855 46767515 - Cfap43 protein_coding retained_intron MGP_CASTEiJ_T0051929.1 MGP_CASTEiJ_G0024430.1 mouse_genomes_project 19 46820753 46844721 - MGP_CASTEiJ_P0051929 Cfap43 protein_coding protein_coding MGP_CASTEiJ_T0006885.1 MGP_CASTEiJ_G0005671.1 mouse_genomes_project 19 7705760 7707933 - Gm28347 lincRNA lincRNA MGP_CASTEiJ_T0050407.1 MGP_CASTEiJ_G0023923.1 mouse_genomes_project 19 2542623 2544190 + MGP_CASTEiJ_P0050407 Rnaseh2c protein_coding protein_coding MGP_CASTEiJ_T0050408.1 MGP_CASTEiJ_G0023923.1 mouse_genomes_project 19 2542637 2543618 + Rnaseh2c protein_coding retained_intron MGP_CASTEiJ_T0050409.1 MGP_CASTEiJ_G0023923.1 mouse_genomes_project 19 2542725 2543683 + Rnaseh2c protein_coding retained_intron MGP_CASTEiJ_T0050410.1 MGP_CASTEiJ_G0023923.1 mouse_genomes_project 19 2542985 2543689 + MGP_CASTEiJ_P0050410 Rnaseh2c protein_coding protein_coding MGP_CASTEiJ_T0050411.1 MGP_CASTEiJ_G0023923.1 mouse_genomes_project 19 2543160 2543685 + Rnaseh2c protein_coding retained_intron MGP_CASTEiJ_T0098364.1 MGP_CASTEiJ_G0035295.1 mouse_genomes_project 19 10751955 10773980 + pseudogene pseudogene MGP_CASTEiJ_T0052121.1 MGP_CASTEiJ_G0024492.1 mouse_genomes_project 19 60588802 60607278 + MGP_CASTEiJ_P0052121 Fam45a protein_coding protein_coding MGP_CASTEiJ_T0052122.1 MGP_CASTEiJ_G0024492.1 mouse_genomes_project 19 60588808 60612240 + MGP_CASTEiJ_P0052122 Fam45a protein_coding protein_coding MGP_CASTEiJ_T0052123.1 MGP_CASTEiJ_G0024492.1 mouse_genomes_project 19 60588813 60595430 + Fam45a protein_coding retained_intron MGP_CASTEiJ_T0052124.1 MGP_CASTEiJ_G0024492.1 mouse_genomes_project 19 60588828 60612240 + MGP_CASTEiJ_P0052124 Fam45a protein_coding protein_coding MGP_CASTEiJ_T0052125.1 MGP_CASTEiJ_G0024492.1 mouse_genomes_project 19 60588828 60599403 + MGP_CASTEiJ_P0052125 Fam45a protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0052126.1 MGP_CASTEiJ_G0024492.1 mouse_genomes_project 19 60589248 60591796 + Fam45a protein_coding processed_transcript MGP_CASTEiJ_T0052127.1 MGP_CASTEiJ_G0024492.1 mouse_genomes_project 19 60606963 60611133 + Fam45a protein_coding retained_intron MGP_CASTEiJ_T0050670.1 MGP_CASTEiJ_G0023979.1 mouse_genomes_project 19 3851418 3854863 - MGP_CASTEiJ_P0050670 Gpr137 protein_coding protein_coding MGP_CASTEiJ_T0050671.1 MGP_CASTEiJ_G0023979.1 mouse_genomes_project 19 3851419 3854548 - MGP_CASTEiJ_P0050671 Gpr137 protein_coding protein_coding MGP_CASTEiJ_T0050672.1 MGP_CASTEiJ_G0023979.1 mouse_genomes_project 19 3851419 3854835 - MGP_CASTEiJ_P0050672 Gpr137 protein_coding protein_coding MGP_CASTEiJ_T0050673.1 MGP_CASTEiJ_G0023979.1 mouse_genomes_project 19 3851419 3855805 - MGP_CASTEiJ_P0050673 Gpr137 protein_coding protein_coding MGP_CASTEiJ_T0050674.1 MGP_CASTEiJ_G0023979.1 mouse_genomes_project 19 3851419 3854548 - MGP_CASTEiJ_P0050674 Gpr137 protein_coding protein_coding MGP_CASTEiJ_T0050231.1 MGP_CASTEiJ_G0023863.1 mouse_genomes_project 19 1055637 1064938 + MGP_CASTEiJ_P0050231 Clcf1 protein_coding protein_coding MGP_CASTEiJ_T0050232.1 MGP_CASTEiJ_G0023863.1 mouse_genomes_project 19 1055663 1064938 + Clcf1 protein_coding retained_intron MGP_CASTEiJ_T0050233.1 MGP_CASTEiJ_G0023863.1 mouse_genomes_project 19 1055704 1064938 + MGP_CASTEiJ_P0050233 Clcf1 protein_coding nonsense_mediated_decay MGP_CASTEiJ_T0050234.1 MGP_CASTEiJ_G0023863.1 mouse_genomes_project 19 1055994 1063961 + Clcf1 protein_coding processed_transcript MGP_CASTEiJ_T0050095.1 MGP_CASTEiJ_G0023831.1 mouse_genomes_project 19 164225 168768 - MGP_CASTEiJ_P0050095 Gal protein_coding protein_coding MGP_CASTEiJ_T0051187.1 MGP_CASTEiJ_G0024187.1 mouse_genomes_project 19 20729631 20897139 - MGP_CASTEiJ_P0051187 Mamdc2 protein_coding protein_coding MGP_CASTEiJ_T0051837.1 MGP_CASTEiJ_G0024399.1 mouse_genomes_project 19 45101741 45110723 + MGP_CASTEiJ_P0051837 Nfkb2 protein_coding protein_coding MGP_CASTEiJ_T0051838.1 MGP_CASTEiJ_G0024399.1 mouse_genomes_project 19 45102698 45110723 + MGP_CASTEiJ_P0051838 Nfkb2 protein_coding protein_coding MGP_CASTEiJ_T0051288.1 MGP_CASTEiJ_G0024222.1 mouse_genomes_project 19 27142869 27146255 - Rln1 protein_coding retained_intron MGP_CASTEiJ_T0051289.1 MGP_CASTEiJ_G0024222.1 mouse_genomes_project 19 27143406 27146370 - MGP_CASTEiJ_P0051289 Rln1 protein_coding protein_coding MGP_CASTEiJ_T0051633.1 MGP_CASTEiJ_G0024339.1 mouse_genomes_project 19 40652739 40658102 - MGP_CASTEiJ_P0051633 Sfrp5 protein_coding protein_coding MGP_CASTEiJ_T0050886.1 MGP_CASTEiJ_G0024045.1 mouse_genomes_project 19 6817869 6831827 + MGP_CASTEiJ_P0050886 Fads1 protein_coding protein_coding MGP_CASTEiJ_T0051623.1 MGP_CASTEiJ_G0024337.1 mouse_genomes_project 19 40598365 40602710 + MGP_CASTEiJ_P0051623 Marveld1 protein_coding protein_coding MGP_CASTEiJ_T0051624.1 MGP_CASTEiJ_G0024337.1 mouse_genomes_project 19 40598713 40602469 + MGP_CASTEiJ_P0051624 Marveld1 protein_coding protein_coding MGP_CASTEiJ_T0052042.1 MGP_CASTEiJ_G0024465.1 mouse_genomes_project 19 56355649 56400062 + MGP_CASTEiJ_P0052042 Tdrd1 protein_coding protein_coding MGP_CASTEiJ_T0052043.1 MGP_CASTEiJ_G0024465.1 mouse_genomes_project 19 56355716 56400062 + MGP_CASTEiJ_P0052043 Tdrd1 protein_coding protein_coding MGP_CASTEiJ_T0052044.1 MGP_CASTEiJ_G0024465.1 mouse_genomes_project 19 56355727 56400062 + MGP_CASTEiJ_P0052044 Tdrd1 protein_coding protein_coding MGP_CASTEiJ_T0052045.1 MGP_CASTEiJ_G0024465.1 mouse_genomes_project 19 56360154 56400062 + MGP_CASTEiJ_P0052045 Tdrd1 protein_coding protein_coding MGP_CASTEiJ_T0051190.1 MGP_CASTEiJ_G0024190.1 mouse_genomes_project 19 21147442 21182319 + MGP_CASTEiJ_P0051190 Ptar1 protein_coding protein_coding MGP_CASTEiJ_T0051932.1 MGP_CASTEiJ_G0024434.1 mouse_genomes_project 19 47160651 47795419 + MGP_CASTEiJ_P0051932 Sorcs3 protein_coding protein_coding MGP_CASTEiJ_T0051933.1 MGP_CASTEiJ_G0024434.1 mouse_genomes_project 19 47580152 47831830 + MGP_CASTEiJ_P0051933 Sorcs3 protein_coding unknown_likely_coding MGP_CASTEiJ_T0050326.1 MGP_CASTEiJ_G0023892.1 mouse_genomes_project 19 1940720 1943034 + MGP_CASTEiJ_P0050326 B4gat1 protein_coding protein_coding MGP_CASTEiJ_T0051069.1 MGP_CASTEiJ_G0024122.1 mouse_genomes_project 19 9529467 9531439 - MGP_CASTEiJ_P0051069 Cntf protein_coding protein_coding MGP_CASTEiJ_T0050758.1 MGP_CASTEiJ_G0024007.1 mouse_genomes_project 19 5357807 5378262 + MGP_CASTEiJ_P0050758 Slc22a8 protein_coding protein_coding MGP_CASTEiJ_T0050759.1 MGP_CASTEiJ_G0024007.1 mouse_genomes_project 19 5357807 5378262 + MGP_CASTEiJ_P0050759 Slc22a8 protein_coding protein_coding